BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780709|ref|YP_003065122.1| cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
         (321 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040386|gb|ACT57182.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 321

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/321 (100%), Positives = 321/321 (100%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV
Sbjct: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN
Sbjct: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA
Sbjct: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT
Sbjct: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP
Sbjct: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300

Query: 301 FVAKDFSAVITGCLDYGEEKI 321
           FVAKDFSAVITGCLDYGEEKI
Sbjct: 301 FVAKDFSAVITGCLDYGEEKI 321


>gi|315121874|ref|YP_004062363.1| cell division protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495276|gb|ADR51875.1| cell division protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 315

 Score =  521 bits (1342), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/314 (80%), Positives = 280/314 (89%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           S+S SWI+K  KGFASTSLKLKEGI  +ISS+RLDD VR+ELEDLLIR+DIG+  AQ+IV
Sbjct: 2   SKSFSWIQKKAKGFASTSLKLKEGIAAVISSKRLDDSVRDELEDLLIRADIGLEAAQEIV 61

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            +L+ KRY KDVS+Q VL DVSE I+K+LMP+SK F+ DFSHRPHVILVVGVNG GKTT 
Sbjct: 62  GDLVAKRYNKDVSIQCVLQDVSEKIYKILMPISKSFDLDFSHRPHVILVVGVNGAGKTTA 121

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKLSKKMSD+GLK+MLAAGDTFRSAA+DQLKIWADRTS+DFV SEIGSDAAALAYEAF+
Sbjct: 122 IGKLSKKMSDSGLKIMLAAGDTFRSAAVDQLKIWADRTSSDFVGSEIGSDAAALAYEAFR 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QAQAK VDVLIIDTAGRLHNNS LMAGIGKMIRVLKRLDP APHSVLQVLDAT GQNALR
Sbjct: 182 QAQAKNVDVLIIDTAGRLHNNSALMAGIGKMIRVLKRLDPDAPHSVLQVLDATVGQNALR 241

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QVE+F +VAGTTGLIMTK+DGTARGG L+ I + HKIPVYFLG GEGINDLEPFVAKDFS
Sbjct: 242 QVELFQSVAGTTGLIMTKLDGTARGGILVSIAIKHKIPVYFLGTGEGINDLEPFVAKDFS 301

Query: 308 AVITGCLDYGEEKI 321
             ITG  DY E+KI
Sbjct: 302 TAITGYFDYNEKKI 315


>gi|86359533|ref|YP_471425.1| cell division protein [Rhizobium etli CFN 42]
 gi|86283635|gb|ABC92698.1| cell division protein [Rhizobium etli CFN 42]
          Length = 522

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/313 (59%), Positives = 242/313 (77%), Gaps = 1/313 (0%)

Query: 1   MSNQKVASES-LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           +  Q +A +  LSW ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+G
Sbjct: 207 IEPQPIAPQPKLSWFQRLRNGLARTSSQLTNQITALFTKRKLDDETLQDLEDLLIQADLG 266

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           V  A ++ + L ++RY KDV+ + V   ++  I K+L P++KP   D SH+PHVILVVGV
Sbjct: 267 VETALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGV 326

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA
Sbjct: 327 NGTGKTTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAA 386

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            LAY+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL RLDP APH+VLQ LDA
Sbjct: 387 GLAYDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGRLDPDAPHTVLQTLDA 446

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGE ++DLE
Sbjct: 447 TTGQNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEAVDDLE 506

Query: 300 PFVAKDFSAVITG 312
           PF A+DF+  I G
Sbjct: 507 PFEAEDFARAIAG 519


>gi|241206753|ref|YP_002977849.1| signal recognition particle-docking protein FtsY [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860643|gb|ACS58310.1| signal recognition particle-docking protein FtsY [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 533

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/307 (59%), Positives = 238/307 (77%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V    LSW ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+GV  A +
Sbjct: 224 VLQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETAMR 283

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + + L ++RY KDV+ + V   ++  I K+L P++KP   D SH+PHVILVVGVNG GKT
Sbjct: 284 VTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKT 343

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWADRT+++F+ +++G+DAA LAY+A
Sbjct: 344 TTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWADRTNSEFIGTKLGADAAGLAYDA 403

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           F+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNA
Sbjct: 404 FEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNA 463

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG+ DLEPF A+D
Sbjct: 464 LSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVEDLEPFEAED 523

Query: 306 FSAVITG 312
           F+  I G
Sbjct: 524 FAHAIAG 530


>gi|190893800|ref|YP_001980342.1| cell division protein [Rhizobium etli CIAT 652]
 gi|190699079|gb|ACE93164.1| cell division protein [Rhizobium etli CIAT 652]
          Length = 520

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/310 (59%), Positives = 242/310 (78%), Gaps = 1/310 (0%)

Query: 4   QKVASES-LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           Q +A +  LSW ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+GV  
Sbjct: 208 QPIAPQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVET 267

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A ++ + L ++RY KDV+ + V   ++  I K+L P++KP   D SH+PHVILVVGVNG 
Sbjct: 268 ALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGT 327

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ K+S AGLKVM+AAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA LA
Sbjct: 328 GKTTTIGKLAAKLSGAGLKVMVAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAAGLA 387

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTG
Sbjct: 388 YDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTG 447

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF 
Sbjct: 448 QNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPFE 507

Query: 303 AKDFSAVITG 312
           A+DF+  I G
Sbjct: 508 AEDFAHAIAG 517


>gi|218661335|ref|ZP_03517265.1| cell division protein [Rhizobium etli IE4771]
          Length = 335

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/305 (60%), Positives = 241/305 (79%), Gaps = 1/305 (0%)

Query: 4   QKVASES-LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           Q +A ++ LSW ++L  G A TSL+L   IT + + R+LDD   ++LEDLLI++D+GV  
Sbjct: 31  QPIAPQAKLSWFQRLRNGLARTSLQLTNQITALFTKRKLDDETLQDLEDLLIQADLGVET 90

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A ++ + L ++RY KDV+ + V   ++  I K+L P++KP   D SH+PHVILVVGVNG 
Sbjct: 91  ALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGT 150

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT ++FV +++G+DAA LA
Sbjct: 151 GKTTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTKSEFVGTKLGADAAGLA 210

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTG
Sbjct: 211 YDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTG 270

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF 
Sbjct: 271 QNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPFE 330

Query: 303 AKDFS 307
           A+DF+
Sbjct: 331 AEDFA 335


>gi|209551317|ref|YP_002283234.1| signal recognition particle-docking protein FtsY [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209537073|gb|ACI57008.1| signal recognition particle-docking protein FtsY [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 528

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/307 (59%), Positives = 238/307 (77%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V    LSW ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+GV  A +
Sbjct: 219 VPQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETALR 278

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + + L ++RY KDV+ + V   ++  I K+L P++KP   D SH+PHVILVVGVNG GKT
Sbjct: 279 VTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKT 338

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++F+ +++G+DAA LAY+A
Sbjct: 339 TTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFIGTKLGADAAGLAYDA 398

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           F+QA+A+K DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNA
Sbjct: 399 FEQAKARKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNA 458

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG+ DLEPF A+D
Sbjct: 459 LSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVEDLEPFEAED 518

Query: 306 FSAVITG 312
           F+  I G
Sbjct: 519 FAHAIAG 525


>gi|116254270|ref|YP_770108.1| cell division protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258918|emb|CAK10027.1| putative SRP receptor [Rhizobium leguminosarum bv. viciae 3841]
          Length = 531

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/307 (59%), Positives = 237/307 (77%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V    LSW ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+GV  A +
Sbjct: 222 VLQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETAMR 281

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + + L ++RY KDV+ + V   ++  I K+L P+++P   D SH+PHVILVVGVNG GKT
Sbjct: 282 VTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVARPLQLDLSHKPHVILVVGVNGTGKT 341

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWADRT ++F+ +++G+DAA LAY+A
Sbjct: 342 TTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWADRTKSEFIGTKLGADAAGLAYDA 401

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           F+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNA
Sbjct: 402 FEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNA 461

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG+ DLEPF A+D
Sbjct: 462 LSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVEDLEPFEAED 521

Query: 306 FSAVITG 312
           F+  I G
Sbjct: 522 FAHAIAG 528


>gi|327190191|gb|EGE57296.1| cell division protein [Rhizobium etli CNPAF512]
          Length = 524

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/313 (58%), Positives = 242/313 (77%), Gaps = 1/313 (0%)

Query: 1   MSNQKVASES-LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           +  Q +A +  LSW ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+G
Sbjct: 209 VEPQPIAPQPKLSWFQRLRNGLARTSSQLTNQITALFTKRKLDDETLQDLEDLLIQADLG 268

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           V  A ++ + L ++RY KDV+ + V   ++  I K+L P++K    D SH+PHVILVVGV
Sbjct: 269 VETALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKSLQLDLSHKPHVILVVGV 328

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA
Sbjct: 329 NGTGKTTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAA 388

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            LAY+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDA
Sbjct: 389 GLAYDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDA 448

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLE
Sbjct: 449 TTGQNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLE 508

Query: 300 PFVAKDFSAVITG 312
           PF A+DF+  I G
Sbjct: 509 PFEAEDFAHAIAG 521


>gi|325294064|ref|YP_004279928.1| cell division particle [Agrobacterium sp. H13-3]
 gi|325061917|gb|ADY65608.1| cell division particle [Agrobacterium sp. H13-3]
          Length = 476

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/303 (60%), Positives = 236/303 (77%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW ++L  G A TS +L   I+ + + R+LD+   +ELEDLLI+SD+GV  A +I   L
Sbjct: 174 LSWFQRLRAGLARTSSQLTTQISALFTKRKLDEDTLDELEDLLIQSDLGVETAMRITGAL 233

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++RY KDVS + V   ++  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 234 SSERYGKDVSGEDVARIMAGEITKVLKPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 293

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+S +GLKVMLAAGDTFR+AAI+QLKIWADRT + F+ +++G+DA+ LAY+A++QA+
Sbjct: 294 LASKLSGSGLKVMLAAGDTFRAAAIEQLKIWADRTGSQFIGTKLGADASGLAYDAYEQAR 353

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL QVE
Sbjct: 354 AQKSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALNQVE 413

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG +GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF A+DF+  I
Sbjct: 414 IFRNVAGVSGLIMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFEAEDFAKAI 473

Query: 311 TGC 313
            G 
Sbjct: 474 AGV 476


>gi|227823743|ref|YP_002827716.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           fredii NGR234]
 gi|227342745|gb|ACP26963.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           fredii NGR234]
          Length = 532

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/303 (60%), Positives = 234/303 (77%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW ++L  G A TS +L   I  + + R+LD+   E+LEDLLI++D+GV  A +I + L
Sbjct: 227 LSWYQRLRHGLARTSSQLTGQIASLFTKRKLDEATLEDLEDLLIQADLGVETAMRITDTL 286

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++RY KDV+ + V   ++  I K+L P+++P   D S +PHVILVVGVNG GKTT IGK
Sbjct: 287 ASERYGKDVTGEDVSRIMAGEIAKVLAPVARPLELDLSQKPHVILVVGVNGTGKTTTIGK 346

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT +D V S++G+DAA LAYEAF+ A+
Sbjct: 347 LAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTKSDIVASKLGADAAGLAYEAFQLAR 406

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            KK DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL+QVE
Sbjct: 407 EKKSDVLIIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALQQVE 466

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG +GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEGI+DLEPF AKDF+  I
Sbjct: 467 IFRNVAGVSGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGIDDLEPFEAKDFAEAI 526

Query: 311 TGC 313
            G 
Sbjct: 527 AGV 529


>gi|15889947|ref|NP_355628.1| cell division particle [Agrobacterium tumefaciens str. C58]
 gi|15157906|gb|AAK88413.1| cell division particle [Agrobacterium tumefaciens str. C58]
          Length = 478

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/303 (59%), Positives = 236/303 (77%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L+W ++L  G A TS +L   I+ + + R+LD+   +ELEDLLI+SD+GV  A +I   L
Sbjct: 176 LTWFQRLRAGLARTSSQLTTQISALFTKRKLDEDTLDELEDLLIQSDLGVETAMRITGAL 235

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++RY KDVS + V   ++  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 236 SSERYGKDVSGEDVARIMAGEITKVLKPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 295

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+S +GLKVMLAAGDTFR+AAI+QLKIWADRT ++F+ +++G+DAA LAY+A++QA+
Sbjct: 296 LAAKLSGSGLKVMLAAGDTFRAAAIEQLKIWADRTGSEFIGTKLGADAAGLAYDAYEQAR 355

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNA+ QVE
Sbjct: 356 AQKSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNAMNQVE 415

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG +GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG+ DLEPF A+DF+  I
Sbjct: 416 IFRNVAGVSGLIMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVEDLEPFEAEDFAKAI 475

Query: 311 TGC 313
            G 
Sbjct: 476 AGV 478


>gi|15966990|ref|NP_387343.1| putative cell division protein [Sinorhizobium meliloti 1021]
 gi|307302458|ref|ZP_07582215.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           meliloti BL225C]
 gi|307316212|ref|ZP_07595656.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           meliloti AK83]
 gi|15076263|emb|CAC47816.1| Putative cell division protein [Sinorhizobium meliloti 1021]
 gi|306898052|gb|EFN28794.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           meliloti AK83]
 gi|306903128|gb|EFN33718.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           meliloti BL225C]
          Length = 548

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/303 (59%), Positives = 236/303 (77%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L+W ++L  G A TS +L   I  + + R+LD+   ++LEDLLI++D+GV  A +I + L
Sbjct: 243 LNWYQRLRLGLARTSSQLTGQIASLFTKRKLDEATLQDLEDLLIQADLGVETAMRITDTL 302

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++RY KDVS + V   ++  I K+L P+++P   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 303 ASERYGKDVSGEDVSRIMAGEITKVLAPVARPLELDLSHKPHVILVVGVNGTGKTTTIGK 362

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT ++ V S++G+DAA LAYEAF++A+
Sbjct: 363 LAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTKSEIVSSKLGADAAGLAYEAFQRAR 422

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL+QVE
Sbjct: 423 EQKADVLIIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALQQVE 482

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG +GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEGI+DLEPF AK+F+  I
Sbjct: 483 IFRNVAGVSGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGIDDLEPFEAKEFAEAI 542

Query: 311 TGC 313
            G 
Sbjct: 543 AGV 545


>gi|150398285|ref|YP_001328752.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           medicae WSM419]
 gi|150029800|gb|ABR61917.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           medicae WSM419]
          Length = 520

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/308 (58%), Positives = 237/308 (76%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
            A   L+W ++L  G A TS +L   I  + + R+LD+   ++LEDLLI++D+GV  A +
Sbjct: 210 AAQPKLNWYQRLRLGLARTSSQLTGQIASLFTKRKLDEATLQDLEDLLIQADLGVETAMR 269

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           I + L ++RY KDVS + V   ++  I K+L P++KP   D +H+PHVILVVGVNG GKT
Sbjct: 270 ITDALASERYGKDVSGEDVSRIMAGEITKVLAPVAKPLELDLNHKPHVILVVGVNGTGKT 329

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K+S AGLKVM+AAGDTFR+AAI+QLKIWA+RT ++ V S++G+DAA LAYEA
Sbjct: 330 TTIGKLAAKLSGAGLKVMMAAGDTFRAAAIEQLKIWAERTRSEIVSSKLGADAAGLAYEA 389

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           F++A+ +K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNA
Sbjct: 390 FQRAREQKADVLIIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNA 449

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L+QVE+F  VAG +GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF AKD
Sbjct: 450 LQQVEIFRNVAGVSGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPFEAKD 509

Query: 306 FSAVITGC 313
           F+  I G 
Sbjct: 510 FAEAIAGV 517


>gi|222087518|ref|YP_002546055.1| cell division protein [Agrobacterium radiobacter K84]
 gi|221724966|gb|ACM28122.1| cell division protein [Agrobacterium radiobacter K84]
          Length = 505

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/305 (58%), Positives = 237/305 (77%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           + LSW ++L  G A TS +L   I  + + R+LDD   ++LEDLLI++D+GV  A ++ +
Sbjct: 195 QKLSWFQRLRAGLARTSSQLTGQIAALFTKRKLDDQTLQDLEDLLIQADLGVETAMRVTD 254

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            L ++RY KDV+ + V   +++ I K+L P++KP   D SH+PHVIL+VGVNG GKTT I
Sbjct: 255 TLASERYGKDVTGEDVSRIMAQEIAKVLKPVAKPLQLDLSHKPHVILIVGVNGTGKTTTI 314

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ K+S AGLKVM+AAGDTFR+AAI+QLKIWADRT ++F+ +++G+DAA LA++AF+Q
Sbjct: 315 GKLAAKLSGAGLKVMVAAGDTFRAAAIEQLKIWADRTKSEFIGTKLGADAAGLAFDAFQQ 374

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL Q
Sbjct: 375 AKANKSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALNQ 434

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           VE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF A++F+ 
Sbjct: 435 VEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPFEAEEFAQ 494

Query: 309 VITGC 313
            I G 
Sbjct: 495 AIAGI 499


>gi|218507763|ref|ZP_03505641.1| cell division protein [Rhizobium etli Brasil 5]
          Length = 303

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/300 (60%), Positives = 236/300 (78%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+GV  A ++ + L +
Sbjct: 1   WFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETALRVTDTLAS 60

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +RY KDV+ + V   ++  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGKL+
Sbjct: 61  ERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKTTTIGKLA 120

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            K+S AGLKVM+AAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA LAY+AF+QA+AK
Sbjct: 121 AKLSGAGLKVMVAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAAGLAYDAFEQAKAK 180

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL QVE+F
Sbjct: 181 KCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALSQVEIF 240

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF A+DF+  I G
Sbjct: 241 RNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPFEAEDFAHAIAG 300


>gi|307943541|ref|ZP_07658885.1| signal recognition particle-docking protein FtsY [Roseibium sp.
           TrichSKD4]
 gi|307773171|gb|EFO32388.1| signal recognition particle-docking protein FtsY [Roseibium sp.
           TrichSKD4]
          Length = 371

 Score =  356 bits (914), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 170/313 (54%), Positives = 232/313 (74%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +++   A   LSW +KL KG + +S  L +GI+ I + R+LD  + EELED+LI++D+GV
Sbjct: 58  VADSSEAEPKLSWFQKLKKGLSRSSSALTDGISSIFTKRKLDASMLEELEDILIQADLGV 117

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A  I + L   RY K+++   V   +SE + K+L P+++P N +   +PHV+L+VGVN
Sbjct: 118 DTAMAITDRLSDGRYDKEIAPDEVRAILSEEVEKVLAPVAQPLNLETGKKPHVVLMVGVN 177

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKLS+K++  G KVMLAAGDTFR+AA++QLKIW +RT A+ +  + G+DAA 
Sbjct: 178 GTGKTTTIGKLSQKLAAEGKKVMLAAGDTFRAAAVEQLKIWGERTGAEVIARDTGADAAG 237

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++A K+A AK VDVL+IDTAGRL N + LM  + K+IRV+K+ DP APH+VL  LDAT
Sbjct: 238 LAFDAMKEAMAKDVDVLLIDTAGRLQNKAELMDELEKVIRVIKKHDPEAPHTVLLTLDAT 297

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QVE+F  VAG TGL+MTK+DGTARGG L+ I   H++PV+F+GVGEG++DLEP
Sbjct: 298 TGQNALNQVEIFGKVAGVTGLVMTKLDGTARGGILVAIAAKHQMPVHFIGVGEGVDDLEP 357

Query: 301 FVAKDFSAVITGC 313
           F AKDF++ I G 
Sbjct: 358 FSAKDFASAIAGL 370


>gi|239833060|ref|ZP_04681389.1| signal recognition particle-docking protein FtsY [Ochrobactrum
           intermedium LMG 3301]
 gi|239825327|gb|EEQ96895.1| signal recognition particle-docking protein FtsY [Ochrobactrum
           intermedium LMG 3301]
          Length = 490

 Score =  355 bits (910), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 168/303 (55%), Positives = 223/303 (73%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G   +S  L E I  I + R+LDD   ++LED+LI++D+G+  A ++ + L
Sbjct: 187 LSWFERLRRGLLRSSNSLSESIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 246

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + RY KDV+ + V   +   I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 247 ASGRYGKDVTGEEVRTIMGAEIEKVLGPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 306

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A+
Sbjct: 307 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 366

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QVE
Sbjct: 367 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 426

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  +AG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEG++DLEPF AKDF+  I
Sbjct: 427 IFKNIAGVNGLVMTKLDGTARGGILVAISAKHKLPIYFIGVGEGVDDLEPFAAKDFARAI 486

Query: 311 TGC 313
            G 
Sbjct: 487 AGV 489


>gi|153008260|ref|YP_001369475.1| signal recognition particle-docking protein FtsY [Ochrobactrum
           anthropi ATCC 49188]
 gi|151560148|gb|ABS13646.1| signal recognition particle-docking protein FtsY [Ochrobactrum
           anthropi ATCC 49188]
          Length = 494

 Score =  355 bits (910), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 168/303 (55%), Positives = 223/303 (73%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G   +S  L E I  I + R+LDD   ++LED+LI++D+G+  A ++ + L
Sbjct: 191 LSWFERLRRGLLRSSNSLSESIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 250

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + RY KDV+ + V   +   I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 251 ASGRYGKDVTGEEVRTIMGAEIEKVLGPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 310

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A+
Sbjct: 311 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 370

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QVE
Sbjct: 371 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 430

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  +AG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEG++DLEPF AKDF+  I
Sbjct: 431 IFKNIAGVNGLVMTKLDGTARGGILVAISAKHKLPIYFIGVGEGVDDLEPFAAKDFARAI 490

Query: 311 TGC 313
            G 
Sbjct: 491 AGV 493


>gi|256059908|ref|ZP_05450094.1| GTP-binding signal recognition particle [Brucella neotomae 5K33]
 gi|261323880|ref|ZP_05963077.1| signal recognition particle-docking protein FtsY [Brucella neotomae
           5K33]
 gi|261299860|gb|EEY03357.1| signal recognition particle-docking protein FtsY [Brucella neotomae
           5K33]
          Length = 465

 Score =  353 bits (907), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 172/303 (56%), Positives = 224/303 (73%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G A +S  L   I  I + R+LDD   ++LED+LI++D+G+  A ++ + L
Sbjct: 162 LSWFERLRRGLARSSSSLSNSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 221

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + RY KDVS + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 222 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 281

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A+
Sbjct: 282 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 341

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QVE
Sbjct: 342 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 401

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  I
Sbjct: 402 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 461

Query: 311 TGC 313
            G 
Sbjct: 462 AGV 464


>gi|148560595|ref|YP_001259756.1| cell division protein FtsY [Brucella ovis ATCC 25840]
 gi|163843957|ref|YP_001628361.1| signal recognition particle-docking protein FtsY [Brucella suis
           ATCC 23445]
 gi|189025002|ref|YP_001935770.1| cell division protein FtsY [Brucella abortus S19]
 gi|237816295|ref|ZP_04595288.1| signal recognition particle-docking protein FtsY [Brucella abortus
           str. 2308 A]
 gi|254690075|ref|ZP_05153329.1| GTP-binding signal recognition particle [Brucella abortus bv. 6
           str. 870]
 gi|254694563|ref|ZP_05156391.1| GTP-binding signal recognition particle [Brucella abortus bv. 3
           str. Tulya]
 gi|254696188|ref|ZP_05158016.1| GTP-binding signal recognition particle [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254700575|ref|ZP_05162403.1| GTP-binding signal recognition particle [Brucella suis bv. 5 str.
           513]
 gi|254704945|ref|ZP_05166773.1| GTP-binding signal recognition particle [Brucella suis bv. 3 str.
           686]
 gi|254707541|ref|ZP_05169369.1| GTP-binding signal recognition particle [Brucella pinnipedialis
           M163/99/10]
 gi|254713651|ref|ZP_05175462.1| GTP-binding signal recognition particle [Brucella ceti M644/93/1]
 gi|254715995|ref|ZP_05177806.1| GTP-binding signal recognition particle [Brucella ceti M13/05/1]
 gi|254731106|ref|ZP_05189684.1| GTP-binding signal recognition particle [Brucella abortus bv. 4
           str. 292]
 gi|256030448|ref|ZP_05444062.1| GTP-binding signal recognition particle [Brucella pinnipedialis
           M292/94/1]
 gi|256158432|ref|ZP_05456330.1| GTP-binding signal recognition particle [Brucella ceti M490/95/1]
 gi|256253852|ref|ZP_05459388.1| GTP-binding signal recognition particle [Brucella ceti B1/94]
 gi|256258328|ref|ZP_05463864.1| GTP-binding signal recognition particle [Brucella abortus bv. 9
           str. C68]
 gi|260755613|ref|ZP_05867961.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 6 str. 870]
 gi|260884639|ref|ZP_05896253.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 9 str. C68]
 gi|261214887|ref|ZP_05929168.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 3 str. Tulya]
 gi|261217763|ref|ZP_05932044.1| signal recognition particle-docking protein FtsY [Brucella ceti
           M13/05/1]
 gi|261220990|ref|ZP_05935271.1| signal recognition particle-docking protein FtsY [Brucella ceti
           B1/94]
 gi|261316421|ref|ZP_05955618.1| signal recognition particle-docking protein FtsY [Brucella
           pinnipedialis B2/94]
 gi|261755645|ref|ZP_05999354.1| signal recognition particle-docking protein FtsY [Brucella suis bv.
           3 str. 686]
 gi|265987492|ref|ZP_06100049.1| signal recognition particle-docking protein FtsY [Brucella
           pinnipedialis M292/94/1]
 gi|265996949|ref|ZP_06109506.1| signal recognition particle-docking protein FtsY [Brucella ceti
           M490/95/1]
 gi|294851176|ref|ZP_06791849.1| signal recognition particle receptor [Brucella sp. NVSL 07-0026]
 gi|148371852|gb|ABQ61831.1| cell division protein FtsY [Brucella ovis ATCC 25840]
 gi|163674680|gb|ABY38791.1| signal recognition particle-docking protein FtsY [Brucella suis
           ATCC 23445]
 gi|189020574|gb|ACD73296.1| cell division protein FtsY [Brucella abortus S19]
 gi|237788362|gb|EEP62577.1| signal recognition particle-docking protein FtsY [Brucella abortus
           str. 2308 A]
 gi|260675721|gb|EEX62542.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 6 str. 870]
 gi|260874167|gb|EEX81236.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 9 str. C68]
 gi|260916494|gb|EEX83355.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 3 str. Tulya]
 gi|260919574|gb|EEX86227.1| signal recognition particle-docking protein FtsY [Brucella ceti
           B1/94]
 gi|260922852|gb|EEX89420.1| signal recognition particle-docking protein FtsY [Brucella ceti
           M13/05/1]
 gi|261295644|gb|EEX99140.1| signal recognition particle-docking protein FtsY [Brucella
           pinnipedialis B2/94]
 gi|261745398|gb|EEY33324.1| signal recognition particle-docking protein FtsY [Brucella suis bv.
           3 str. 686]
 gi|262551417|gb|EEZ07407.1| signal recognition particle-docking protein FtsY [Brucella ceti
           M490/95/1]
 gi|264659689|gb|EEZ29950.1| signal recognition particle-docking protein FtsY [Brucella
           pinnipedialis M292/94/1]
 gi|294819765|gb|EFG36764.1| signal recognition particle receptor [Brucella sp. NVSL 07-0026]
          Length = 465

 Score =  353 bits (907), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 172/303 (56%), Positives = 225/303 (74%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + L
Sbjct: 162 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 221

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + RY KDVS + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 222 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 281

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A+
Sbjct: 282 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 341

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QVE
Sbjct: 342 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 401

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  I
Sbjct: 402 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 461

Query: 311 TGC 313
            G 
Sbjct: 462 AGV 464


>gi|306842917|ref|ZP_07475553.1| signal recognition particle-docking protein FtsY [Brucella sp. BO2]
 gi|306286940|gb|EFM58460.1| signal recognition particle-docking protein FtsY [Brucella sp. BO2]
          Length = 470

 Score =  353 bits (907), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 171/303 (56%), Positives = 225/303 (74%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + L
Sbjct: 167 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 226

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + RY KDVS + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 227 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 286

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A+
Sbjct: 287 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 346

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QVE
Sbjct: 347 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 406

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEG++DLEPF AKDF+  I
Sbjct: 407 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGVDDLEPFAAKDFARAI 466

Query: 311 TGC 313
            G 
Sbjct: 467 AGV 469


>gi|23502784|ref|NP_698911.1| signal recognition particle-docking protein FtsY [Brucella suis
           1330]
 gi|62290788|ref|YP_222581.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 1 str. 9-941]
 gi|82700699|ref|YP_415273.1| GTP-binding signal recognition particle [Brucella melitensis biovar
           Abortus 2308]
 gi|254708922|ref|ZP_05170733.1| cell division protein FtsY [Brucella pinnipedialis B2/94]
 gi|256370336|ref|YP_003107847.1| signal recognition particle-docking protein FtsY [Brucella microti
           CCM 4915]
 gi|260546052|ref|ZP_05821792.1| cell division protein FtsY [Brucella abortus NCTC 8038]
 gi|260758838|ref|ZP_05871186.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 4 str. 292]
 gi|260760562|ref|ZP_05872905.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|261315022|ref|ZP_05954219.1| signal recognition particle-docking protein FtsY [Brucella
           pinnipedialis M163/99/10]
 gi|261321389|ref|ZP_05960586.1| signal recognition particle-docking protein FtsY [Brucella ceti
           M644/93/1]
 gi|261751083|ref|ZP_05994792.1| signal recognition particle-docking protein FtsY [Brucella suis bv.
           5 str. 513]
 gi|297247175|ref|ZP_06930893.1| signal recognition particle receptor [Brucella abortus bv. 5 str.
           B3196]
 gi|23348805|gb|AAN30826.1| signal recognition particle-docking protein FtsY [Brucella suis
           1330]
 gi|62196920|gb|AAX75220.1| FtsY, signal recognition particle-docking protein [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616800|emb|CAJ11890.1| GTP-binding signal recognition particle (SRP54)
           G-domain:ATP/GTP-binding site motif A (P-loop):AAA
           ATPase:Cell division trans [Brucella melitensis biovar
           Abortus 2308]
 gi|256000499|gb|ACU48898.1| signal recognition particle-docking protein FtsY [Brucella microti
           CCM 4915]
 gi|260096159|gb|EEW80035.1| cell division protein FtsY [Brucella abortus NCTC 8038]
 gi|260669156|gb|EEX56096.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 4 str. 292]
 gi|260670994|gb|EEX57815.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|261294079|gb|EEX97575.1| signal recognition particle-docking protein FtsY [Brucella ceti
           M644/93/1]
 gi|261304048|gb|EEY07545.1| signal recognition particle-docking protein FtsY [Brucella
           pinnipedialis M163/99/10]
 gi|261740836|gb|EEY28762.1| signal recognition particle-docking protein FtsY [Brucella suis bv.
           5 str. 513]
 gi|297174344|gb|EFH33691.1| signal recognition particle receptor [Brucella abortus bv. 5 str.
           B3196]
          Length = 463

 Score =  353 bits (906), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 172/303 (56%), Positives = 225/303 (74%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + L
Sbjct: 160 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 219

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + RY KDVS + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 220 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 279

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A+
Sbjct: 280 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 339

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QVE
Sbjct: 340 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 399

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  I
Sbjct: 400 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 459

Query: 311 TGC 313
            G 
Sbjct: 460 AGV 462


>gi|110635717|ref|YP_675925.1| signal recognition particle-docking protein FtsY [Mesorhizobium sp.
           BNC1]
 gi|110286701|gb|ABG64760.1| signal recognition particle-docking protein FtsY [Chelativorans sp.
           BNC1]
          Length = 500

 Score =  353 bits (906), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 166/302 (54%), Positives = 223/302 (73%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            W ++L +G   +S +L++ I  I   R+LD+   ++LED+L+R+D+G+  A ++ + L 
Sbjct: 198 PWFQRLREGLYRSSRELRDNIAGIFLKRKLDEDTLQDLEDVLLRADLGLETAMRVTDALS 257

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY KD++   V   ++E I K+L P++ P   D SH+PHVILVVGVNG GKTT IGKL
Sbjct: 258 VGRYGKDITGAEVQAVMAEEIEKVLKPVALPLELDLSHKPHVILVVGVNGTGKTTTIGKL 317

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K++  GL VMLAAGDTFR+AAI+QLKIW +RT +  + S +G+DAA LAYEA+++A+A
Sbjct: 318 AAKLAQGGLNVMLAAGDTFRAAAIEQLKIWGERTGSAVISSRLGADAAGLAYEAYEKAKA 377

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLIIDTAGRL N + LMA + K++RVL + DP APH+VLQ LDATTGQNAL QVE+
Sbjct: 378 AGSDVLIIDTAGRLQNKAELMAELEKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVEI 437

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG +GL+MTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF A DF+  I 
Sbjct: 438 FRNVAGVSGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFSASDFAKAIA 497

Query: 312 GC 313
           G 
Sbjct: 498 GV 499


>gi|161619852|ref|YP_001593739.1| signal recognition particle-docking protein FtsY [Brucella canis
           ATCC 23365]
 gi|260567579|ref|ZP_05838049.1| cell division protein FtsY [Brucella suis bv. 4 str. 40]
 gi|161336663|gb|ABX62968.1| signal recognition particle-docking protein FtsY [Brucella canis
           ATCC 23365]
 gi|260157097|gb|EEW92177.1| cell division protein FtsY [Brucella suis bv. 4 str. 40]
          Length = 465

 Score =  352 bits (904), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 172/303 (56%), Positives = 226/303 (74%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G A +S  L + I+ I + R+LDD   ++LED+LI++D+G+  A ++ + L
Sbjct: 162 LSWFERLRRGLARSSSSLSDSISGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 221

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + RY KDVS + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 222 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 281

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A+
Sbjct: 282 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSSVVSSKLGADAAGLAYDAWEKAK 341

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QVE
Sbjct: 342 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 401

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  I
Sbjct: 402 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 461

Query: 311 TGC 313
            G 
Sbjct: 462 AGV 464


>gi|225853372|ref|YP_002733605.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis ATCC 23457]
 gi|256112266|ref|ZP_05453187.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis bv. 3 str. Ether]
 gi|256263146|ref|ZP_05465678.1| cell division protein FtsY [Brucella melitensis bv. 2 str. 63/9]
 gi|225641737|gb|ACO01651.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis ATCC 23457]
 gi|263093049|gb|EEZ17199.1| cell division protein FtsY [Brucella melitensis bv. 2 str. 63/9]
 gi|326409935|gb|ADZ67000.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis M28]
 gi|326539648|gb|ADZ87863.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis M5-90]
          Length = 465

 Score =  352 bits (903), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 171/303 (56%), Positives = 224/303 (73%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + L
Sbjct: 162 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 221

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + RY KDV  + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 222 ASGRYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 281

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A+
Sbjct: 282 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 341

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QVE
Sbjct: 342 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 401

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  I
Sbjct: 402 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 461

Query: 311 TGC 313
            G 
Sbjct: 462 AGV 464


>gi|225628133|ref|ZP_03786168.1| signal recognition particle-docking protein FtsY [Brucella ceti
           str. Cudo]
 gi|260169358|ref|ZP_05756169.1| signal recognition particle-docking protein FtsY [Brucella sp.
           F5/99]
 gi|261758876|ref|ZP_06002585.1| cell division protein FtsY [Brucella sp. F5/99]
 gi|225616958|gb|EEH14005.1| signal recognition particle-docking protein FtsY [Brucella ceti
           str. Cudo]
 gi|261738860|gb|EEY26856.1| cell division protein FtsY [Brucella sp. F5/99]
          Length = 465

 Score =  352 bits (902), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 171/303 (56%), Positives = 225/303 (74%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + L
Sbjct: 162 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 221

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + RY KDVS + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 222 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 281

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A+
Sbjct: 282 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 341

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QV+
Sbjct: 342 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVD 401

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  I
Sbjct: 402 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 461

Query: 311 TGC 313
            G 
Sbjct: 462 AGV 464


>gi|254504835|ref|ZP_05116986.1| signal recognition particle-docking protein FtsY, putative
           [Labrenzia alexandrii DFL-11]
 gi|222440906|gb|EEE47585.1| signal recognition particle-docking protein FtsY, putative
           [Labrenzia alexandrii DFL-11]
          Length = 465

 Score =  352 bits (902), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 169/307 (55%), Positives = 226/307 (73%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V  E LSW ++L KG + +S  L +GI+ I + R+LD  + EELED+LI++D+GV  A  
Sbjct: 157 VEEEKLSWFQRLKKGLSRSSSALTDGISSIFTKRKLDAAMLEELEDILIQADLGVDTAMA 216

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           I E L   RY K++S + V   +SE + K+L  +++P + +   +PHV+L+VGVNG GKT
Sbjct: 217 ITERLSDGRYDKEISPEEVREILSEEVEKVLASVAEPLDLNSGKKPHVVLMVGVNGTGKT 276

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKLSKK+ + G  VMLAAGDTFR+AA++QLKIW +RT A+ +  + G+DAA LA++A
Sbjct: 277 TTIGKLSKKLREEGKTVMLAAGDTFRAAAVEQLKIWGERTGAEVIARDTGADAAGLAFDA 336

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K+A  K+VDVL+IDTAGRL N + LM  + K+IRV+K+ DP APH+ L  LDATTGQNA
Sbjct: 337 MKEATEKQVDVLLIDTAGRLQNKAELMDELEKVIRVIKKHDPDAPHTCLLTLDATTGQNA 396

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QVE+F  VAG TGL+MTK+DGTARGG L+ I   H +PV+F+GVGEG+ DLEPF AKD
Sbjct: 397 LNQVEIFGKVAGVTGLVMTKLDGTARGGILVAIAAKHGLPVHFIGVGEGVEDLEPFSAKD 456

Query: 306 FSAVITG 312
           FS+ I G
Sbjct: 457 FSSAIAG 463


>gi|265993697|ref|ZP_06106254.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis bv. 3 str. Ether]
 gi|262764678|gb|EEZ10599.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis bv. 3 str. Ether]
          Length = 463

 Score =  352 bits (902), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 171/303 (56%), Positives = 224/303 (73%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + L
Sbjct: 160 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 219

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + RY KDV  + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 220 ASGRYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 279

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A+
Sbjct: 280 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 339

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QVE
Sbjct: 340 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 399

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  I
Sbjct: 400 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 459

Query: 311 TGC 313
            G 
Sbjct: 460 AGV 462


>gi|254717993|ref|ZP_05179804.1| cell division protein FtsY [Brucella sp. 83/13]
 gi|265982939|ref|ZP_06095674.1| signal recognition particle-docking protein FtsY [Brucella sp.
           83/13]
 gi|306839772|ref|ZP_07472573.1| signal recognition particle-docking protein FtsY [Brucella sp. NF
           2653]
 gi|264661531|gb|EEZ31792.1| signal recognition particle-docking protein FtsY [Brucella sp.
           83/13]
 gi|306405127|gb|EFM61405.1| signal recognition particle-docking protein FtsY [Brucella sp. NF
           2653]
          Length = 475

 Score =  352 bits (902), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 170/303 (56%), Positives = 224/303 (73%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + L
Sbjct: 172 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 231

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + RY KDVS + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 232 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 291

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+ +++A+
Sbjct: 292 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDTWEKAK 351

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QVE
Sbjct: 352 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 411

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEG++DLEPF AKDF+  I
Sbjct: 412 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGVDDLEPFAAKDFARAI 471

Query: 311 TGC 313
            G 
Sbjct: 472 AGV 474


>gi|13473652|ref|NP_105220.1| cell division protein FtsY [Mesorhizobium loti MAFF303099]
 gi|14024402|dbj|BAB51006.1| mlr4320 [Mesorhizobium loti MAFF303099]
          Length = 313

 Score =  351 bits (901), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 165/302 (54%), Positives = 223/302 (73%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW +++  G A +S +L   I  + + R+LD+   ++LED+LIR+D+G+  A +I + L 
Sbjct: 11  SWFQRMRDGLARSSRELTGNIAGVFTKRKLDEDTLQDLEDVLIRADLGMETALRITDALA 70

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY KDVS   V   ++  + K+L P+++P   D SH+PHVILVVGVNG GKTT IGKL
Sbjct: 71  ASRYGKDVSDTDVRTVMAAEVEKVLTPVARPLELDLSHKPHVILVVGVNGTGKTTTIGKL 130

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K++D GL VMLAAGDTFR+AAI+QLKIW +RT +  + S++G+DAA LAY+AF++A+ 
Sbjct: 131 AAKLTDGGLSVMLAAGDTFRAAAIEQLKIWGERTKSPVIASKLGADAAGLAYDAFEKAKE 190

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ +DATTGQNAL QVE+
Sbjct: 191 AGSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPEAPHTVLQTVDATTGQNALNQVEI 250

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +AG  GL+MTK+DGTARGG L+ I   HK+PVYF+GVGE ++DLEPF A +F+  I 
Sbjct: 251 FRNIAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEQVDDLEPFSASEFARAIA 310

Query: 312 GC 313
           G 
Sbjct: 311 GV 312


>gi|306843384|ref|ZP_07475985.1| signal recognition particle-docking protein FtsY [Brucella sp. BO1]
 gi|306276075|gb|EFM57775.1| signal recognition particle-docking protein FtsY [Brucella sp. BO1]
          Length = 469

 Score =  351 bits (900), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 170/303 (56%), Positives = 225/303 (74%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + L
Sbjct: 166 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 225

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + RY KDVS + V   +S  I K+L P++KP   + SH+PHVILVVGVNG GKTT IGK
Sbjct: 226 ASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELNLSHKPHVILVVGVNGTGKTTTIGK 285

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A+
Sbjct: 286 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 345

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QVE
Sbjct: 346 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 405

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEG++DLEPF AKDF+  I
Sbjct: 406 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGVDDLEPFAAKDFARAI 465

Query: 311 TGC 313
            G 
Sbjct: 466 AGV 468


>gi|118591327|ref|ZP_01548725.1| GTP-binding signal recognition particle (SRP54)
           G-domain:ATP/GTP-binding site motif A (P-loop):AAA
           [Stappia aggregata IAM 12614]
 gi|118435999|gb|EAV42642.1| GTP-binding signal recognition particle (SRP54)
           G-domain:ATP/GTP-binding site motif A (P-loop):AAA
           [Stappia aggregata IAM 12614]
          Length = 474

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 165/302 (54%), Positives = 225/302 (74%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW ++L  G + +S  L EGI+ I + R+LD  + EELED+LI++D+GV  A  I + L
Sbjct: 171 LSWFQRLKNGLSRSSASLTEGISSIFTKRKLDASMLEELEDILIQADLGVDTAMAITDRL 230

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              RY K++S + V   ++E + K+L P+++P + D   +PHV+L+VGVNG GKTT IGK
Sbjct: 231 SDGRYNKEISPEEVRAILAEEVEKVLAPVARPLDLDTGKKPHVVLMVGVNGTGKTTTIGK 290

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS+K+   G  VMLAAGDTFR+AA++QLKIW +RT A+ +  + G+DAA LAY+A K+A+
Sbjct: 291 LSQKLRSEGKTVMLAAGDTFRAAAVEQLKIWGERTGAEVIARDTGADAAGLAYDAMKEAK 350

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK VDVL++DTAGRL N + LM  + K+IRV+K+ DP APH+VL  LDATTGQNAL QVE
Sbjct: 351 AKGVDVLLVDTAGRLQNKAELMDELEKVIRVIKKHDPEAPHTVLLTLDATTGQNALNQVE 410

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG TGL+MTK+DGTARGG L+ I   H +PV+F+GVGEG+ DLEPF A++F++ I
Sbjct: 411 IFGKVAGVTGLVMTKLDGTARGGILVAIAAKHAMPVHFIGVGEGVADLEPFSAREFASAI 470

Query: 311 TG 312
            G
Sbjct: 471 AG 472


>gi|319780718|ref|YP_004140194.1| signal recognition particle-docking protein FtsY [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317166606|gb|ADV10144.1| signal recognition particle-docking protein FtsY [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 601

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 164/302 (54%), Positives = 221/302 (73%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW +++  G A +S +L   I  + + R+LD+   ++LED+LIR+D+G+  A ++ + L 
Sbjct: 299 SWFQRMKDGLARSSKELTGNIAGVFTKRKLDEETLQDLEDVLIRADLGMETALRVTDALA 358

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY KDVS   V   ++  + K+L  ++ P   D SH+PHVILVVGVNG GKTT IGKL
Sbjct: 359 ASRYGKDVSDTEVRAIMAAEVEKVLTHVAMPLELDLSHKPHVILVVGVNGTGKTTTIGKL 418

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K++D GL VMLAAGDTFR+AAI+QLKIW +RT +  + S++G+DAA LAY+AF++A+ 
Sbjct: 419 AAKLTDGGLSVMLAAGDTFRAAAIEQLKIWGERTKSPVIASKLGADAAGLAYDAFERAKE 478

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ +DATTGQNAL QVE+
Sbjct: 479 AGSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPEAPHTVLQTVDATTGQNALNQVEI 538

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG  GL+MTK+DGTARGG L+ I   HK+PVYF+GVGE ++DLEPF A +F+  I 
Sbjct: 539 FRNVAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEQVDDLEPFSASEFARAIA 598

Query: 312 GC 313
           G 
Sbjct: 599 GV 600


>gi|256045538|ref|ZP_05448421.1| signal recognition particle receptor FTSY [Brucella melitensis bv.
           1 str. Rev.1]
 gi|260562848|ref|ZP_05833334.1| cell division protein FtsY [Brucella melitensis bv. 1 str. 16M]
 gi|260152864|gb|EEW87956.1| cell division protein FtsY [Brucella melitensis bv. 1 str. 16M]
          Length = 465

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 170/303 (56%), Positives = 223/303 (73%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + L
Sbjct: 162 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 221

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +  Y KDV  + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 222 ASGHYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 281

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A+
Sbjct: 282 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 341

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QVE
Sbjct: 342 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 401

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  I
Sbjct: 402 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 461

Query: 311 TGC 313
            G 
Sbjct: 462 AGV 464


>gi|265991964|ref|ZP_06104521.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263003030|gb|EEZ15323.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis bv. 1 str. Rev.1]
          Length = 463

 Score =  349 bits (895), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 170/303 (56%), Positives = 223/303 (73%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + L
Sbjct: 160 LSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDAL 219

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +  Y KDV  + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 220 ASGHYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGK 279

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A+
Sbjct: 280 LAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKAK 339

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QVE
Sbjct: 340 EAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQVE 399

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  I
Sbjct: 400 IFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARAI 459

Query: 311 TGC 313
            G 
Sbjct: 460 AGV 462


>gi|260469862|ref|ZP_05814009.1| signal recognition particle-docking protein FtsY [Mesorhizobium
           opportunistum WSM2075]
 gi|259028368|gb|EEW29697.1| signal recognition particle-docking protein FtsY [Mesorhizobium
           opportunistum WSM2075]
          Length = 326

 Score =  348 bits (893), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 164/302 (54%), Positives = 223/302 (73%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW +++  G A +S +L   I  + + R+LD+   ++LED+LIR+D+G+  A ++ + L 
Sbjct: 24  SWFQRMRDGLARSSRELTGNIAGVFTKRKLDEDTLQDLEDVLIRADLGMETALRVTDALA 83

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + RY KDVS   V   ++  + K+L  ++ P   D SH+PHVILVVGVNG GKTT IGKL
Sbjct: 84  SSRYGKDVSDTEVRAIMAAEVEKVLTHVAMPLELDLSHKPHVILVVGVNGTGKTTTIGKL 143

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K++D GL VMLAAGDTFR+AAI+QLKIW +RT++  + S++G+DAA LAY+AF++A+ 
Sbjct: 144 AAKLTDGGLSVMLAAGDTFRAAAIEQLKIWGERTNSPVIASKLGADAAGLAYDAFERAKE 203

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ +DATTGQNAL QVE+
Sbjct: 204 AGSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPEAPHTVLQTVDATTGQNALNQVEI 263

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG  GL+MTK+DGTARGG L+ I   HK+PVYF+GVGE ++DLEPF A +F+  I 
Sbjct: 264 FRNVAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEQVDDLEPFSASEFARAIA 323

Query: 312 GC 313
           G 
Sbjct: 324 GV 325


>gi|17986415|ref|NP_539049.1| signal recognition particle receptor FTSY [Brucella melitensis bv.
           1 str. 16M]
 gi|17982009|gb|AAL51313.1| signal recognition particle receptor ftsy [Brucella melitensis bv.
           1 str. 16M]
          Length = 314

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 171/313 (54%), Positives = 225/313 (71%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M  +      LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+
Sbjct: 1   MPAEVAPEPKLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGL 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A ++ + L +  Y KDV  + V   +S  I K+L P++KP   D SH+PHVILVVGVN
Sbjct: 61  ETAMRVTDALASGHYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA 
Sbjct: 121 GTGKTTTIGKLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAG 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LAY+A+++A+    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDAT
Sbjct: 181 LAYDAWEKAKEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QVE+F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEP
Sbjct: 241 TGQNALNQVEIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEP 300

Query: 301 FVAKDFSAVITGC 313
           F AKDF+  I G 
Sbjct: 301 FAAKDFARAIAGV 313


>gi|328541784|ref|YP_004301893.1| Cell division transporter substrate-binding protein FtsY (Signal
           recognition particle receptor) [polymorphum gilvum
           SL003B-26A1]
 gi|326411536|gb|ADZ68599.1| Cell division transporter substrate-binding protein FtsY (Signal
           recognition particle receptor) [Polymorphum gilvum
           SL003B-26A1]
          Length = 419

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 166/311 (53%), Positives = 227/311 (72%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +    A+  LSW  +L +G + +S  L EGI+ I + RRLD  + +ELED+LI++D+GV 
Sbjct: 107 APDPAAAPRLSWFGRLKQGLSRSSSALTEGISSIFTKRRLDAAMLDELEDVLIQADLGVD 166

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            A  I E L   R+ K++S + V   ++E + K+L P+++P + D  HRPHV+L+VGVNG
Sbjct: 167 TATAITERLSVGRFDKEISAEEVRAVLAEEVEKVLAPVARPLDLDGEHRPHVVLMVGVNG 226

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKLS K++  G  VMLAAGDTFR+AA++QLKIW  RT A+ V  + G+DAA L
Sbjct: 227 TGKTTTIGKLSSKLAAEGRTVMLAAGDTFRAAAVEQLKIWGSRTGAEVVARDTGADAAGL 286

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A + A+ K VDVL++DTAGRL N + LMA + K+IRVL+++DP APH+VL  LDATT
Sbjct: 287 AFDALQAARDKGVDVLLVDTAGRLQNKAELMAELEKVIRVLRKIDPAAPHTVLLTLDATT 346

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL QVE+F   AG TGL+MTK+DGTARGG L+ I   + +PV+F+GVGEG++DLEPF
Sbjct: 347 GQNALSQVEIFGRTAGVTGLVMTKLDGTARGGILVAIAAKYGLPVHFIGVGEGVDDLEPF 406

Query: 302 VAKDFSAVITG 312
            AKD++  I G
Sbjct: 407 SAKDYARAIAG 417


>gi|222150095|ref|YP_002551052.1| cell division particle [Agrobacterium vitis S4]
 gi|221737077|gb|ACM38040.1| cell division particle [Agrobacterium vitis S4]
          Length = 454

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 176/301 (58%), Positives = 232/301 (77%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW ++L  G   TS +L   I+ + + R+LD+   EELEDLLI++D+GV  A ++   L 
Sbjct: 149 SWFQRLKAGLFRTSSQLTGQISALFTKRKLDEETLEELEDLLIQADLGVETAMRVTGTLS 208

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++RY KDV+ + V   ++  I K+L P++KP   D +H+PHVILVVGVNG GKTT IGKL
Sbjct: 209 SERYGKDVTGEDVTRIMAAEIVKVLKPVAKPLALDLNHKPHVILVVGVNGTGKTTTIGKL 268

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+S +GLKVMLAAGDTFR+AAI+QLKIWADRT + F+ +++G+DAA LAY+AF++A+A
Sbjct: 269 AAKLSGSGLKVMLAAGDTFRAAAIEQLKIWADRTGSTFIGTKLGADAAGLAYDAFEKAKA 328

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K DVLIIDTAGRL N + LM  + K++RVL +LDP APH+VLQ LDATTGQNA+ QVE+
Sbjct: 329 EKSDVLIIDTAGRLQNKTELMDELEKIVRVLSKLDPDAPHTVLQTLDATTGQNAMNQVEI 388

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF A+DF+  I 
Sbjct: 389 FRNVAGVNGLIMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFEAEDFARAIA 448

Query: 312 G 312
           G
Sbjct: 449 G 449


>gi|114705326|ref|ZP_01438234.1| GTP-binding signal recognition particle (SRP54)
           G-domain:ATP/GTP-binding site motif A (P-loop):AAA
           [Fulvimarina pelagi HTCC2506]
 gi|114540111|gb|EAU43231.1| GTP-binding signal recognition particle (SRP54)
           G-domain:ATP/GTP-binding site motif A (P-loop):AAA
           [Fulvimarina pelagi HTCC2506]
          Length = 403

 Score =  343 bits (879), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 167/307 (54%), Positives = 222/307 (72%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A+  L W+++L +    +S  L   IT I + RRLDD V ++ ED+LI++D+GV  A +I
Sbjct: 87  AAPKLPWLQRLREALGRSSSNLTGSITSIFTKRRLDDDVLQDFEDVLIQADLGVETAMRI 146

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            + L   RY K++S   V   ++E I K L P+++P   D    PHVILVVGVNG GKTT
Sbjct: 147 TDRLSEGRYGKEISGSEVKRVLAEEIEKTLDPVAQPLELDLDKVPHVILVVGVNGTGKTT 206

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ K++ AG+ V LAAGDTFR+AA++QLKIW +RT+++ V  +IG+DAA LA++A+
Sbjct: 207 TIGKLAAKLTRAGISVTLAAGDTFRAAAVEQLKIWGERTNSEVVARQIGADAAGLAFDAY 266

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A   K DVLIIDTAGRL N + LMA + K+IRVL++ DP +PH+VLQ LDATTGQNA+
Sbjct: 267 DVAVKNKSDVLIIDTAGRLQNKAELMAELEKIIRVLQKRDPDSPHTVLQTLDATTGQNAM 326

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QV++F  VAG  GL+MTK+DGTARGG L+ I   HK+PVYF+GVGEGI+DLEPF AKDF
Sbjct: 327 NQVDIFRNVAGVNGLVMTKLDGTARGGILVAIGSKHKLPVYFVGVGEGIDDLEPFKAKDF 386

Query: 307 SAVITGC 313
           +  I G 
Sbjct: 387 ANAIAGI 393


>gi|163869370|ref|YP_001610626.1| cell division protein [Bartonella tribocorum CIP 105476]
 gi|161019073|emb|CAK02631.1| cell division protein [Bartonella tribocorum CIP 105476]
          Length = 390

 Score =  342 bits (878), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 162/312 (51%), Positives = 222/312 (71%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +    V  +  +W  +L KG + +S +L   I+D+   R+LD+   +ELED+LI++D+GV
Sbjct: 76  LPEPSVEQKKTAWFGRLRKGLSLSSQRLSGSISDLFLKRKLDEETLQELEDILIQADLGV 135

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A +I   L + RY KD+S   +   V++ I K+L P++ P   D SH+PHVIL+VGVN
Sbjct: 136 ETATRITNTLASSRYGKDLSSDDIHTIVADEIKKVLEPVAMPLELDLSHKPHVILLVGVN 195

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K+++ GL VMLAAGDTFR+AAI+QL IW  R  +  + +++G+DAA+
Sbjct: 196 GTGKTTTIGKLAAKLTEGGLNVMLAAGDTFRAAAIEQLHIWGKRIDSPVISTKLGADAAS 255

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++AF++A+    DVLIIDTAGRL N S LM  + K+IRVL++  P APH++LQ LDAT
Sbjct: 256 LAFDAFEKAKKANSDVLIIDTAGRLQNKSELMDELAKIIRVLRKHSPQAPHTILQTLDAT 315

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QVE+F  +AG  GL+MTK+DGTARGG LI I   HK+P+YF+GVGE I DL+P
Sbjct: 316 TGQNALSQVEIFRNIAGVNGLVMTKLDGTARGGILIAIAAKHKLPIYFIGVGENIEDLQP 375

Query: 301 FVAKDFSAVITG 312
           F A DF+  I G
Sbjct: 376 FSASDFAETIVG 387


>gi|163757350|ref|ZP_02164439.1| putative cell division protein [Hoeflea phototrophica DFL-43]
 gi|162284852|gb|EDQ35134.1| putative cell division protein [Hoeflea phototrophica DFL-43]
          Length = 529

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/300 (57%), Positives = 225/300 (75%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W ++L +G + TS +L   IT I + R+LD+   EELED+L+++D+GV  A +I + L +
Sbjct: 227 WWQRLRQGLSRTSGQLTGQITGIFTKRKLDEETLEELEDVLLQADLGVETALRITDALAS 286

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            RY KD+S   V   +++ I ++L P++KP   D SH+PHVILVVGVNG GKTT IGKL+
Sbjct: 287 GRYGKDISPAEVQKVMADEIARVLEPVAKPLELDLSHKPHVILVVGVNGTGKTTTIGKLA 346

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            K+   GLKV LAAGDTFR+AAI+QLKIW DRT +  V +++G+DAA LAYEAF+ A+A 
Sbjct: 347 AKLHSGGLKVTLAAGDTFRAAAIEQLKIWGDRTGSKVVSTKLGADAAGLAYEAFETARAD 406

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DVLIIDTAGRL N + LM  + K++RV+ +LDP APH+VLQ LDATTGQNAL QVE+F
Sbjct: 407 GADVLIIDTAGRLQNRTELMDELAKVVRVIGKLDPDAPHTVLQTLDATTGQNALNQVEIF 466

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             VAG  GL+MTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF A DF++ I G
Sbjct: 467 KNVAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFEAADFASAIAG 526


>gi|312114981|ref|YP_004012577.1| signal recognition particle-docking protein FtsY [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311220110|gb|ADP71478.1| signal recognition particle-docking protein FtsY [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 409

 Score =  336 bits (861), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 161/303 (53%), Positives = 221/303 (72%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + W+++L +G   TS KL EGIT + + R+LDD   EELEDLLI+SD+G+AV+ +++  L
Sbjct: 106 VGWLQRLKQGLTKTSSKLTEGITGVFTKRKLDDDTLEELEDLLIQSDLGLAVSARVIAAL 165

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              RY  D+S + V   ++  + K+L P+++P   D S +P+V+L+VGVNG GKTT IGK
Sbjct: 166 KKARYNSDISPEEVRAILAAEVEKVLGPVAQPLEIDTSKKPYVVLMVGVNGTGKTTTIGK 225

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            +K+ ++ GLKVMLAAGDTFR+AAI+QLK+W +RT A  V    G+DAA LA++A  +A+
Sbjct: 226 YAKQFTEQGLKVMLAAGDTFRAAAIEQLKVWGERTGAPVVSGAQGADAAGLAFDALTRAK 285

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D+LIIDTAGRL N + LMA + K+IRV++++DP APHSVL  LDATTGQNAL QVE
Sbjct: 286 KEGADLLIIDTAGRLQNKTGLMAELEKIIRVIRKVDPEAPHSVLLTLDATTGQNALSQVE 345

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F   AG TGLIMTK+DGTARGG L+ I   H +PV+ +GVGE  +DL+ F A+DF+  I
Sbjct: 346 IFGKTAGVTGLIMTKLDGTARGGILVAIAAKHGLPVHAIGVGESASDLQAFSAQDFARAI 405

Query: 311 TGC 313
            G 
Sbjct: 406 AGV 408


>gi|90421123|ref|ZP_01229025.1| cell division protein FtsY [Aurantimonas manganoxydans SI85-9A1]
 gi|90334615|gb|EAS48395.1| cell division protein FtsY [Aurantimonas manganoxydans SI85-9A1]
          Length = 362

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 161/303 (53%), Positives = 219/303 (72%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + W+++L +G A +S +L   I  I + RRLD+   ++ ED+LI++D+GV  A KI + L
Sbjct: 56  VPWLQRLREGLARSSTQLTGSIGAIFTKRRLDEDTLQDFEDVLIQADLGVETALKITDRL 115

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              R+ +++S Q V   ++E I K L P++ P   D + +PHVILVVGVNG GKTT IGK
Sbjct: 116 SEGRFGREISGQDVRTILAEEIEKALDPVALPLELDLAKKPHVILVVGVNGTGKTTTIGK 175

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K++  GLKV L AGDTFR+AA++QLKIW +RT ++ V   IG+DAA+LAYE + +A 
Sbjct: 176 LAAKLTRGGLKVTLCAGDTFRAAAVEQLKIWGERTQSEVVAKAIGADAASLAYEGYDRAV 235

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRL N + LMA + K++RVL++ +P APH+VL  LDATTGQNA+ QVE
Sbjct: 236 ENGSDVLIIDTAGRLQNKTELMAELEKIVRVLQKREPDAPHTVLLTLDATTGQNAMNQVE 295

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG  GL+MTK+DG+ARGG L+ I    ++PVYF+GVGEGI+DLEPF AKDF+A I
Sbjct: 296 IFRNVAGVNGLVMTKLDGSARGGILVAIAAKFRLPVYFVGVGEGIDDLEPFKAKDFAAAI 355

Query: 311 TGC 313
            G 
Sbjct: 356 AGT 358


>gi|319409458|emb|CBI83107.1| cell division protein [Bartonella schoenbuchensis R1]
          Length = 407

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 159/301 (52%), Positives = 227/301 (75%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +W  +L KG + +S +L + +  +   ++LD+   +ELE++LI++D+GV  A +I + L 
Sbjct: 104 AWFERLKKGLSLSSQQLSDSLGALFIKKKLDEDTLQELENILIQADLGVETATRITDILA 163

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + RY KD+S+  +   +++ I K+L P++ P   D SH+PHVIL+VGVNG GKTT IGKL
Sbjct: 164 SSRYEKDLSLDDLYTIMADEIKKVLEPVAIPLELDLSHKPHVILLVGVNGTGKTTTIGKL 223

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+++ GLK+ LAAGDTFR+AAI+QL IW +RT A+ + +++G+DAA+LA++A+++A+ 
Sbjct: 224 AAKLAEGGLKITLAAGDTFRAAAIEQLHIWGERTGANVISTKLGADAASLAFDAYEKAKK 283

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ DVLIIDTAGRL N S LM  + K+IRVLK+ +P APH+VLQ LDATTGQNAL QV++
Sbjct: 284 EESDVLIIDTAGRLQNKSELMDELAKIIRVLKKHNPQAPHTVLQTLDATTGQNALNQVDI 343

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH VAG  GL+MTK+DGTARGG LI I   +K+PVYF+G+GE I DLEPF A DF+  I 
Sbjct: 344 FHNVAGVNGLVMTKLDGTARGGILIAIANKYKLPVYFIGIGEKIEDLEPFSASDFAKAIV 403

Query: 312 G 312
           G
Sbjct: 404 G 404


>gi|121602701|ref|YP_988356.1| signal recognition particle-docking protein FtsY [Bartonella
           bacilliformis KC583]
 gi|120614878|gb|ABM45479.1| signal recognition particle-docking protein FtsY [Bartonella
           bacilliformis KC583]
          Length = 387

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 158/307 (51%), Positives = 221/307 (71%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V  + ++W  +L  G + +S +L   I  + + R+L+    +ELED+LI++D+GV  A  
Sbjct: 78  VEQKEVAWFERLKHGLSRSSQQLGGSIGALFTKRKLNADTLQELEDILIQADLGVETASH 137

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           I + L + RY K++S+  +   V++ I K+L P++ P   D S++PHVIL VGVNG GKT
Sbjct: 138 ITDILSSGRYGKNLSLDDIHTIVADEIKKVLEPVAIPLELDLSYKPHVILFVGVNGTGKT 197

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT A  V ++ G+DAA+LA+EA
Sbjct: 198 TTIGKLAAKLTSNGLKVMLAAGDTFRAAAIEQLHIWGERTGAPVVSTQSGADAASLAFEA 257

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           +++A+    DVLIIDTAGRL N + LM  + K+IRVL++ DP APH++LQ LDATTGQNA
Sbjct: 258 YEKAKKANNDVLIIDTAGRLQNKTELMDELAKIIRVLRKHDPQAPHTILQTLDATTGQNA 317

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV++F  +AG  GL+MTK+DGTARGG L+ +   +K+PVYF+G+GE   DLEPF A D
Sbjct: 318 LNQVDIFRNIAGVNGLVMTKLDGTARGGILVALAAKYKLPVYFIGIGENTEDLEPFSASD 377

Query: 306 FSAVITG 312
           F+  ITG
Sbjct: 378 FAQAITG 384


>gi|49474822|ref|YP_032864.1| cell division protein ftsY [Bartonella quintana str. Toulouse]
 gi|49240326|emb|CAF26808.1| Cell division protein ftsY [Bartonella quintana str. Toulouse]
          Length = 407

 Score =  332 bits (850), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 156/307 (50%), Positives = 219/307 (71%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V  +  +W R+L KG A +S +L E I ++    +LD    ++LED+LI++D+GV  A  
Sbjct: 98  VEQKKTAWFRRLQKGLALSSQRLSESIGELFVKEKLDKDTLQKLEDILIQADLGVETAAH 157

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           I + + + RY K +S   +   ++  I K+L P++ P   D +H+PHVIL+VGVNG GKT
Sbjct: 158 ITDTIASSRYEKSLSPDNIHTIMANEIEKILEPVAIPLELDLNHKPHVILLVGVNGTGKT 217

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K++  GLKVMLAA D FR+AAI+QL IW++R  A  V +++G+DAA+LA++A
Sbjct: 218 TTIGKLAAKLTKGGLKVMLAACDMFRAAAIEQLHIWSERIGAPVVSTKLGADAASLAFDA 277

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           +++A+    DVLIIDTAGRL N + LM  + K+IRVL + +PHAPH++LQ LDATTGQNA
Sbjct: 278 YEKAKKANSDVLIIDTAGRLQNKTELMDELAKIIRVLGKHNPHAPHTILQTLDATTGQNA 337

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QVE+F  +AG  GL+MTK+DGTARGG L+ I   +K+PVYF+G+GE I DL+PF A D
Sbjct: 338 LNQVEIFRDIAGVNGLVMTKLDGTARGGILVAIAAKYKLPVYFIGIGEDIEDLQPFSASD 397

Query: 306 FSAVITG 312
           F+  I G
Sbjct: 398 FAKTIAG 404


>gi|49476311|ref|YP_034352.1| cell division protein ftsY [Bartonella henselae str. Houston-1]
 gi|49239119|emb|CAF28423.1| Cell division protein ftsY [Bartonella henselae str. Houston-1]
          Length = 416

 Score =  332 bits (850), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 157/307 (51%), Positives = 219/307 (71%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V  E  +W  +L KG A +S +L + I ++    +LD    +ELED+LI++D+GV  A  
Sbjct: 107 VEQEKRAWFGRLKKGLALSSQRLSKSIGEVFVKEKLDKDKLQELEDILIQADLGVETATH 166

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           I + L + RY K++S   V   ++  I K+L P++ P   D +H+PHVIL+VGVNG GKT
Sbjct: 167 ITDTLASSRYKKNLSPDDVHSIIANEIEKVLKPVAIPLELDLNHKPHVILLVGVNGTGKT 226

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K++  GLKVMLAAGDTFR+AAI+QL IW +R  A  + +++G+DAA+LA++A
Sbjct: 227 TTIGKLAAKLTKGGLKVMLAAGDTFRAAAIEQLHIWGERIGAPVISTKLGADAASLAFDA 286

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           +++A+    DVLIIDTAGRL N + LM  + K+IRVL + +P APH++LQ LDATTGQNA
Sbjct: 287 YEKAKKANSDVLIIDTAGRLQNKTELMDELAKIIRVLGKHNPQAPHTILQTLDATTGQNA 346

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV++F  +AG  GL+MTK+DGTARGG L+ I   +K+PVYF+G+GE I DL+PF A D
Sbjct: 347 LNQVDIFRDIAGVNGLVMTKLDGTARGGILVAIAAKYKLPVYFIGIGENIEDLQPFSASD 406

Query: 306 FSAVITG 312
           F+  I G
Sbjct: 407 FAKTIAG 413


>gi|240851394|ref|YP_002972797.1| cell division protein FtsY [Bartonella grahamii as4aup]
 gi|240268517|gb|ACS52105.1| cell division protein FtsY [Bartonella grahamii as4aup]
          Length = 417

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/312 (50%), Positives = 223/312 (71%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S   V  + ++W  +L K  + +S +L   I+D+   R+LD+   +E ED+LI++D+GV
Sbjct: 103 LSEPSVEQKKIAWFGRLKKSLSLSSQRLSGSISDLFVKRKLDEDTLQEFEDILIQADLGV 162

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A +I   L + RY KD+S   +   V++ + K+L P++ P   D S++PHVIL+VGVN
Sbjct: 163 ETATRITNTLASSRYGKDLSPDDIHTIVADEVKKVLEPVAIPLELDLSYKPHVILLVGVN 222

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++  GLKVMLAAGDTFR+AAI+QL IW  RT +  + +++G+DAA+
Sbjct: 223 GTGKTTTIGKLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGKRTDSPVISTKLGADAAS 282

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++A+++A+    DVLIIDTAGRL N S LM  + K+IRVLK+  P APH++LQ LDAT
Sbjct: 283 LAFDAYEKAKKANSDVLIIDTAGRLQNKSELMDELAKIIRVLKKHTPQAPHTILQTLDAT 342

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV++F  +AG  GL+MTK+DG+ARGG L+ I   +K+PVYF+G+GE I DL+P
Sbjct: 343 TGQNALNQVKIFRDIAGVNGLVMTKLDGSARGGILVAIAAKYKLPVYFIGIGENIEDLQP 402

Query: 301 FVAKDFSAVITG 312
           F A DF+  I G
Sbjct: 403 FSASDFAETIAG 414


>gi|319407865|emb|CBI81518.1| cell division protein [Bartonella sp. 1-1C]
          Length = 413

 Score =  328 bits (840), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 153/312 (49%), Positives = 223/312 (71%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S   +  +  +W  +L KG + +S +L + I  +   ++LD+   +ELED+LI++D+G+
Sbjct: 99  LSTLTIEQKKAAWFERLKKGLSRSSQQLSDSIGTLFVKQKLDENTLQELEDVLIQADLGI 158

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               +I++ L T+ Y K++S + +   V++ I K+L P++ P   D +H+PHVIL+VGVN
Sbjct: 159 ETTTRIIDILSTRYYEKNLSPKDIYAIVTDEIKKVLEPIAFPLEIDLNHKPHVILLVGVN 218

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++  GLKVML AGDTFR+AA++QL IW +RT A    +++G+DAA+
Sbjct: 219 GTGKTTTIGKLAAKLTMGGLKVMLVAGDTFRAAAVEQLHIWGERTKAPVFSTKLGADAAS 278

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++A+++A+ +  DVL+IDTAGRL N   LM  + K+IRVL + +P APH+VLQ LDA+
Sbjct: 279 LAFDAYEKAKKEGYDVLLIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDAS 338

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV +F  +AG  GL+MTK+DGTARGG L+ I   HKIPV+F+GVGE + DLEP
Sbjct: 339 TGQNALNQVNVFRDIAGVNGLVMTKLDGTARGGILVAIASKHKIPVHFIGVGENVEDLEP 398

Query: 301 FVAKDFSAVITG 312
           F A DF+  I G
Sbjct: 399 FSASDFAEAIIG 410


>gi|319404905|emb|CBI78506.1| cell division protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 413

 Score =  327 bits (838), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 152/307 (49%), Positives = 219/307 (71%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V  +  +W  +L KG + +S +L + I  +   ++LD+   +ELED+LI++D+G+    +
Sbjct: 104 VEQKKAAWFERLKKGLSRSSQQLSDSIGTLFVKKKLDENTLQELEDILIQADLGIETTTR 163

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           I++ L T+ Y K++S + +   V+  I K+L P++ P   D +H+PHVIL+VGVNG GKT
Sbjct: 164 IIDILSTRYYEKNLSPKDIYTIVTNEIKKVLEPIAFPLEIDLNHKPHVILLVGVNGTGKT 223

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K++  GLKVML AGDTFR+AA++QL IW +R  A    +++G+DAA+LA++A
Sbjct: 224 TTIGKLAAKLTMGGLKVMLVAGDTFRAAAVEQLHIWGERAKAPVFSTKLGADAASLAFDA 283

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           +++A+ +  DVL+IDTAGRL N   LM  + K+IRVL + +P APH+VLQ LDA+TGQNA
Sbjct: 284 YEKAKKENYDVLLIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDASTGQNA 343

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV +F  +AG  GL+MTK+DGTARGG L+ I   HKIPV+F+GVGE + DLEPF A D
Sbjct: 344 LNQVNVFRDIAGVNGLVMTKLDGTARGGILVAIASKHKIPVHFIGVGENVEDLEPFSASD 403

Query: 306 FSAVITG 312
           F+  I G
Sbjct: 404 FAEAIIG 410


>gi|85713492|ref|ZP_01044482.1| cell division transporter substrate-binding protein FtsY
           [Nitrobacter sp. Nb-311A]
 gi|85699396|gb|EAQ37263.1| cell division transporter substrate-binding protein FtsY
           [Nitrobacter sp. Nb-311A]
          Length = 315

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 157/302 (51%), Positives = 216/302 (71%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW R+L+ G   TS  L   + D+++ R+LD  + +++ED+L+R+D+G AVA++I E + 
Sbjct: 12  SWWRRLSGGLKRTSTSLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGAAVAERIAEAVG 71

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY K +S   V   V+  + K+L P+++P   D +  P VILVVGVNG GKTT IGKL
Sbjct: 72  EGRYDKAISADEVKAVVATEVEKVLAPVARPLVIDGTFTPFVILVVGVNGSGKTTTIGKL 131

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+S  G KVM+AAGDTFR+AAI+QLK+W +RT +  +  E GSD+A+LA+ A   A+ 
Sbjct: 132 AAKLSAEGRKVMMAAGDTFRAAAIEQLKVWGERTGSPVIAGEQGSDSASLAFNALTAARN 191

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K DVL+IDTAGRL N + LM  + KM+RV++R+D  APH VL VLDAT GQNAL QVE 
Sbjct: 192 EKRDVLLIDTAGRLQNKAELMNELEKMVRVIRRVDAAAPHVVLLVLDATVGQNALSQVEA 251

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH  AG TGL+MTK+DGTARGG L+ +   HK+PV+F+GVGEG++DL PF A+DF+  + 
Sbjct: 252 FHRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGEGVDDLAPFTARDFARAVA 311

Query: 312 GC 313
           G 
Sbjct: 312 GI 313


>gi|75674514|ref|YP_316935.1| cell division transporter substrate-binding protein FtsY
           [Nitrobacter winogradskyi Nb-255]
 gi|74419384|gb|ABA03583.1| signal recognition particle-docking protein FtsY [Nitrobacter
           winogradskyi Nb-255]
          Length = 315

 Score =  325 bits (832), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 158/313 (50%), Positives = 218/313 (69%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           MS+        SW R+L+ G   TS  L   + D+++ R+LD  + +++ED+L+R+D+G 
Sbjct: 1   MSDSSEDQPKQSWWRRLSGGLKRTSASLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           AVA++I E +   RY K +S   V   V+  + K+L P+++P   D + +P VILVVGVN
Sbjct: 61  AVAERIAEAVGEGRYDKAISADEVKAVVATEVEKVLAPVARPLIIDETVKPFVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K+S  G KVM+AAGDTFR+AAIDQLK+W +RT +  +    GSD+A+
Sbjct: 121 GSGKTTTIGKLAAKLSAEGRKVMMAAGDTFRAAAIDQLKVWGERTGSPVIAGAQGSDSAS 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA+ A  +A+ +  DVL+IDTAGRL N + LM  + KM+RV++R+D  APH VL VLDAT
Sbjct: 181 LAFNALTEARNQNSDVLLIDTAGRLQNKAELMNELEKMVRVIRRVDSSAPHVVLLVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL QVE FH  AG TGL+MTK+DGTARGG L+ +   HK+PV+F+GVGEG++DL P
Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGEGVDDLAP 300

Query: 301 FVAKDFSAVITGC 313
           F A DF+  + G 
Sbjct: 301 FTAGDFARAVAGI 313


>gi|27375584|ref|NP_767113.1| cell division protein [Bradyrhizobium japonicum USDA 110]
 gi|27348721|dbj|BAC45738.1| bll0473 [Bradyrhizobium japonicum USDA 110]
          Length = 315

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 157/313 (50%), Positives = 219/313 (69%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M++       LSW R+L+ G   TS  L   + D+++ R+LD  + +++ED+L+R+D+G 
Sbjct: 1   MNDTTSDPPKLSWWRRLSNGLKRTSSSLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +VA +I + + T RY K +S   V   V+  + K+L P++KP   D + +P VILVVGVN
Sbjct: 61  SVAVRIADAVGTGRYDKAISADEVKDVVATEVEKVLAPVAKPLEIDAARKPFVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKLS+K +  G KVMLAAGDTFR+AAI+QLK+W +RT    +    GSD+A+
Sbjct: 121 GSGKTTTIGKLSQKFASEGRKVMLAAGDTFRAAAIEQLKVWGERTKTPVIAGTQGSDSAS 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA+ A   A+ +K DVL+IDTAGRL N + LM  + K++RV++++D  APH+VL VLDAT
Sbjct: 181 LAFNALTAAKEQKTDVLLIDTAGRLQNKAELMNELEKVVRVIRKVDDTAPHAVLLVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL QVE FH  AG TGL+MTK+DGTARGG L+ +    K+PV+F+GVGEG++DL P
Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALAEKFKLPVHFIGVGEGVDDLAP 300

Query: 301 FVAKDFSAVITGC 313
           F A+DF+  I G 
Sbjct: 301 FTARDFARAIAGI 313


>gi|154244370|ref|YP_001415328.1| signal recognition particle-docking protein FtsY [Xanthobacter
           autotrophicus Py2]
 gi|154158455|gb|ABS65671.1| signal recognition particle-docking protein FtsY [Xanthobacter
           autotrophicus Py2]
          Length = 529

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 157/300 (52%), Positives = 217/300 (72%), Gaps = 1/300 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W R L  G A T+  L +GITD++S R+LD    EELED+LIR+D+GV  + +IVE +  
Sbjct: 229 WSR-LASGLARTASSLGQGITDLVSKRKLDADTLEELEDVLIRADLGVETSMRIVETVGK 287

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            R+ K +S + V   ++E + ++L+P+++P   D +H+P V+L+VGVNG GKTT IGKL+
Sbjct: 288 GRHDKMISPEEVKRLIAEEVERILIPVAQPLVVDTAHKPFVVLMVGVNGSGKTTTIGKLA 347

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +    G KV+LAAGDTFR+AAI+QLK+W  RT A  +  E GSDAA +A+EA  +A+A 
Sbjct: 348 AQWRTEGKKVVLAAGDTFRAAAIEQLKVWGTRTGATVIAREQGSDAAGVAHEAVVEARAA 407

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D+L++DTAGRL N + LMA + K++RV+K+L+P APH+VL VLDAT GQNAL QVE F
Sbjct: 408 GADILMVDTAGRLQNRTELMAELEKVVRVIKKLEPSAPHAVLLVLDATVGQNALSQVEAF 467

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             +AG TG++MTK+DGTARGG L+ I   HK+PV+ +GVGE   DL+PF A+DF+  I G
Sbjct: 468 TRIAGVTGMVMTKLDGTARGGILVAIAAKHKLPVHLIGVGEAAEDLQPFAARDFARAIAG 527


>gi|319899511|ref|YP_004159608.1| cell division protein [Bartonella clarridgeiae 73]
 gi|319403479|emb|CBI77059.1| cell division protein [Bartonella clarridgeiae 73]
          Length = 387

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 154/312 (49%), Positives = 220/312 (70%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S   V  +  +W  +L KG + +S +L + I  + + ++LD+   +ELED+LI++D G+
Sbjct: 73  LSTSTVEQKKAAWFERLKKGLSLSSQQLSDSIGSLFAKKKLDENTLQELEDILIQADFGI 132

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               +I++ L T RY K++S + +   V+  I K+L P++ P   D +H+PHVIL+VGVN
Sbjct: 133 ETTTRIIDILATGRYEKNLSPKDIYTIVTNEIKKVLEPIAFPLEIDLNHKPHVILLVGVN 192

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++  GLK+ML AGDTFR+AAI+QL IW +RT A  + S++ +D A+
Sbjct: 193 GTGKTTTIGKLAAKLTAGGLKIMLVAGDTFRAAAIEQLHIWGERTKAPVISSKLAADPAS 252

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           L ++A+K+A+ +  DVLIIDTAGRL N   LM  + K+IRVL + +P APH+VLQ LDAT
Sbjct: 253 LVFDAYKKAKKEGSDVLIIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDAT 312

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV +F  +AG  GL+MTK+DGTARGG L+ I   HK+PV+F+G+GE + DLEP
Sbjct: 313 TGQNALNQVNIFRDIAGVNGLVMTKLDGTARGGILVAIASKHKLPVHFIGIGENVEDLEP 372

Query: 301 FVAKDFSAVITG 312
           F A DF+  I G
Sbjct: 373 FSASDFAEAIIG 384


>gi|300024820|ref|YP_003757431.1| signal recognition particle-docking protein FtsY [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526641|gb|ADJ25110.1| signal recognition particle-docking protein FtsY [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 390

 Score =  322 bits (824), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 156/301 (51%), Positives = 210/301 (69%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W +KL  G   TS KL  GITD+ S R+LD    ++LEDLLI++D+G+A   +I + +  
Sbjct: 90  WFQKLKSGLGKTSAKLTSGITDLFSKRKLDAATLDDLEDLLIQADLGIATTGRITDAIGK 149

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            R+ K +S   V   +S  + ++L P++KP   D + +PHVI++VGVNG GKTT IGKL+
Sbjct: 150 GRFEKGISADEVRAILSSEVERVLKPVAKPLEVDAARKPHVIMMVGVNGTGKTTTIGKLA 209

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +K+   G  V+LAAGDTFR+AAIDQLK+W +RT    V  ++G DA+ LA++A KQAQ  
Sbjct: 210 QKLKAEGKSVVLAAGDTFRAAAIDQLKVWGERTGCPVVARQVGEDASGLAFDALKQAQGT 269

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DVL++DTAGRL N   LM  + K+IRVLK+LD  APH V+ VLDATTGQNAL+QVE+F
Sbjct: 270 GADVLLLDTAGRLQNKQALMEELEKVIRVLKKLDSTAPHDVILVLDATTGQNALQQVEVF 329

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              AG TGL+MTK+DGTARGG L+ I     +PV+ +GVGEG +DL+PF A +F+  I G
Sbjct: 330 RDRAGVTGLVMTKLDGTARGGILVAIADKFGLPVHAIGVGEGADDLQPFEAAEFARAIAG 389

Query: 313 C 313
            
Sbjct: 390 T 390


>gi|319406390|emb|CBI80031.1| cell division protein [Bartonella sp. AR 15-3]
          Length = 410

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 153/300 (51%), Positives = 216/300 (72%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W  +L KG + +S +L + I  +   ++LD+   +ELED+LI++D+G+    +I++ L T
Sbjct: 108 WFERLKKGLSLSSQQLSDSIGTLFVKKKLDENTLQELEDILIQADLGIETTTRIIDILAT 167

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            RY K+ S + +   V++ I K+L P++ P   D +H+PHVIL+VGVNG GKTT IGKL+
Sbjct: 168 SRYEKNFSSKDIYTIVTDEIKKVLEPVAFPLEIDLNHKPHVILLVGVNGTGKTTTIGKLA 227

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            K++  GLKVML AGDTFR+AAI+QL IW +RT A  +  ++G+DAA+LA++A+ +A+ +
Sbjct: 228 AKLTAGGLKVMLVAGDTFRAAAIEQLHIWGERTKAPVISGKLGADAASLAFDAYGKAKKE 287

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DVLIIDTAGRL N   LM  + K+IRVL + +P APH+VLQ LDATTGQNAL QV +F
Sbjct: 288 NSDVLIIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDATTGQNALNQVNVF 347

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             +AG  GL+MTK+DG+ARGG L+ I   HK+PV+F+G+GE + DLEPF A DF+  I G
Sbjct: 348 RDIAGVNGLVMTKLDGSARGGILVAIASKHKLPVHFIGIGENVEDLEPFSASDFAEAIIG 407


>gi|92116024|ref|YP_575753.1| signal recognition particle-docking protein FtsY [Nitrobacter
           hamburgensis X14]
 gi|91798918|gb|ABE61293.1| signal recognition particle-docking protein FtsY [Nitrobacter
           hamburgensis X14]
          Length = 315

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 158/312 (50%), Positives = 217/312 (69%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           MS+        SW R+L+ G   TS  L   + D+++ R+LD  + +++ED+L+R+D+G 
Sbjct: 1   MSDSTDDKPKQSWWRRLSGGLKRTSSSLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           AVA++I   +   RY K +S   V   V+  + K+L  ++KP   D +H+P VILVVGVN
Sbjct: 61  AVAERIAAAVGEGRYDKAISADEVKAVVATEVEKVLAAVAKPLVVDETHKPFVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K+S  G KVM+AAGDTFR+AAI+QL++W +RT +  V    GSDAA+
Sbjct: 121 GSGKTTTIGKLAAKLSAEGRKVMMAAGDTFRAAAIEQLQVWGERTGSPVVAGAQGSDAAS 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA+ A   A+  + DVL+IDTAGRL N + LM  + K++RV++R+D  APH+VL VLDAT
Sbjct: 181 LAFNALTAARDDRRDVLLIDTAGRLQNKAELMNELEKVVRVIRRVDAAAPHAVLLVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL QVE FH  AG TGL+MTK+DGTARGG L+ +   HK+PV+F+GVGEG++DL P
Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGEGVDDLAP 300

Query: 301 FVAKDFSAVITG 312
           F A DF+  I G
Sbjct: 301 FTAHDFAKAIAG 312


>gi|39933286|ref|NP_945562.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris CGA009]
 gi|192288638|ref|YP_001989243.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris TIE-1]
 gi|39652911|emb|CAE25653.1| putative cell division protein FtsY [Rhodopseudomonas palustris
           CGA009]
 gi|192282387|gb|ACE98767.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris TIE-1]
          Length = 315

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 157/302 (51%), Positives = 210/302 (69%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW R+L+ G   TS  +   +++ +S R+LD  + EE+ED+L+R+D+G  VA +I + + 
Sbjct: 11  SWWRRLSSGLKRTSSSIGTALSEFVSKRKLDRAMLEEIEDVLLRADLGTEVAARIAKAVG 70

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY K +S   V   V+  + K+L P+++P   D  ++P VIL+VGVNG GKTT IGKL
Sbjct: 71  EGRYDKMISASDVKEIVAAEVEKVLAPVAQPLEVDAGNKPFVILMVGVNGSGKTTTIGKL 130

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S + +  G KVMLAAGDTFR+AAIDQLK+W DRT    V    GSDAA LA+ A   A+ 
Sbjct: 131 SARFASEGHKVMLAAGDTFRAAAIDQLKVWGDRTGTPVVAGAQGSDAAGLAFNALTAAKE 190

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVL+IDTAGRL N + LM+ + K++RV+K++D  APH+VL VLDAT GQNAL QVE 
Sbjct: 191 QGRDVLLIDTAGRLQNRTELMSELEKVVRVIKKVDATAPHAVLLVLDATVGQNALSQVEA 250

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   AG TGL+MTK+DGTARGG L+ I   HK+PV+F+GVGEG+ DL PF A+DF+  I 
Sbjct: 251 FTKTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVEDLAPFTARDFAKAIA 310

Query: 312 GC 313
           G 
Sbjct: 311 GT 312


>gi|148251983|ref|YP_001236568.1| signal recognition particle-docking protein FtsY [Bradyrhizobium
           sp. BTAi1]
 gi|146404156|gb|ABQ32662.1| signal recognition particle-docking protein FtsY [Bradyrhizobium
           sp. BTAi1]
          Length = 315

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/315 (49%), Positives = 220/315 (69%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M++    +  LSW R+L+ G   TS  L   + D+++ R+LD  + +++ED+L+R+D+G 
Sbjct: 1   MNDTTSETPKLSWWRRLSAGLKRTSGALGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            VA +I E +   RY K +S   V   V+  + K+L P++KP   + SH+P VILVVGVN
Sbjct: 61  QVAARIAEAVGAGRYDKAISADEVKAVVATEVEKVLSPVAKPLVVEASHKPFVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K +  G +VMLAAGDTFR+AAI+QLK+W +RT A  +    GSD+A+
Sbjct: 121 GSGKTTTIGKLAAKFASDGKQVMLAAGDTFRAAAIEQLKVWGERTKAPVIAGAQGSDSAS 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA+ A   A+ +  D+L+IDTAGRL N + LM  + K++RV++++D  APH+VL VLDAT
Sbjct: 181 LAFTAITAAKEQARDILLIDTAGRLQNKAELMNELEKVVRVIRKVDASAPHAVLLVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL QVE FH  AG TGL+MTK+DGTARGG L+ +    K+PV+F+GVGEG++DL+P
Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALSEKFKLPVHFIGVGEGVDDLQP 300

Query: 301 FVAKDFSAVITGCLD 315
           F A+DF+  I G  D
Sbjct: 301 FAARDFARAIAGIDD 315


>gi|146337532|ref|YP_001202580.1| cell division transporter substrate-binding protein FtsY
           [Bradyrhizobium sp. ORS278]
 gi|146190338|emb|CAL74334.1| Cell division transporter substrate-binding protein FtsY (Signal
           recognition particle receptor) [Bradyrhizobium sp.
           ORS278]
          Length = 315

 Score =  318 bits (816), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 155/315 (49%), Positives = 218/315 (69%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M++    +   SW R+L+ G   TS  L   + D+++ R+LD  + +++ED+L+R+D+G 
Sbjct: 1   MNDTTSETPKRSWWRRLSDGLKRTSGALGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            VA +I E +   RY K +S   V   V+  + K+L P++KP   +  H+P VILVVGVN
Sbjct: 61  QVAARIAEAVGAGRYDKAISADEVKAVVATEVEKVLSPVAKPLTIEPGHKPFVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL++K +  G  VMLAAGDTFR+AAI+QLK+W +RT A  +    GSD+A+
Sbjct: 121 GSGKTTTIGKLAQKFASEGKHVMLAAGDTFRAAAIEQLKVWGERTKAPVIAGAQGSDSAS 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA+ A   A+ +  D+L+IDTAGRL N + LM  + K++RV++++D  APH+VL VLDAT
Sbjct: 181 LAFNAITAAKEQGRDILLIDTAGRLQNKAELMNELEKVVRVIRKVDASAPHAVLLVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL QVE FH  AG TGL+MTK+DGTARGG L+ +    K+PV+F+GVGEG++DL+P
Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALSEKFKLPVHFIGVGEGVDDLQP 300

Query: 301 FVAKDFSAVITGCLD 315
           F AKDF+  I G  D
Sbjct: 301 FAAKDFARAIAGIED 315


>gi|218458897|ref|ZP_03498988.1| cell division protein [Rhizobium etli Kim 5]
          Length = 235

 Score =  318 bits (814), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 153/230 (66%), Positives = 189/230 (82%), Gaps = 4/230 (1%)

Query: 87  DVSEL----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           DVS +    I K+L P++KP   D SH+PHVILVVGVNG GKTT IGKL+ K+S AGLKV
Sbjct: 3   DVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKTTTIGKLAAKLSGAGLKV 62

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           MLAAGDTFR+AAI+QLKIWA+RT ++FV +++G+DAA LAY+AF+QA+AKK DVLI+DTA
Sbjct: 63  MLAAGDTFRAAAIEQLKIWAERTKSEFVGTKLGADAAGLAYDAFEQAKAKKCDVLIVDTA 122

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL QVE+F  VAG  GLI
Sbjct: 123 GRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALSQVEIFRNVAGVNGLI 182

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           MTK+DGTARGG L+ I   +K+PVYF+GVGEG++DLEPF A+DF+  I G
Sbjct: 183 MTKLDGTARGGILVAISAKYKLPVYFIGVGEGVDDLEPFEAEDFAHAIAG 232


>gi|299133082|ref|ZP_07026277.1| signal recognition particle-docking protein FtsY [Afipia sp. 1NLS2]
 gi|298593219|gb|EFI53419.1| signal recognition particle-docking protein FtsY [Afipia sp. 1NLS2]
          Length = 318

 Score =  318 bits (814), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 159/301 (52%), Positives = 214/301 (71%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW ++L+ G   TS  +   +TD++S R+LD  + E +ED+L+R+D+G  VA +I  ++ 
Sbjct: 12  SWWQRLSAGLKRTSGSIGGALTDLVSKRKLDRAMLEGIEDVLLRADLGTEVAARIAAKVG 71

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY KDVS Q V   V+  + K+L P++KP   D S +P VILVVGVNG GKTT IGKL
Sbjct: 72  EGRYDKDVSAQDVQEIVAAEVEKVLAPVAKPLVIDESQKPFVILVVGVNGSGKTTTIGKL 131

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K++  G +VMLAAGDTFR+AAI+QLK+W +RT    V    GSD+A+LA++A  +A+ 
Sbjct: 132 AAKLTAEGRRVMLAAGDTFRAAAIEQLKVWGERTGVPVVARAHGSDSASLAFDAASEAKT 191

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL+IDTAGRL N + LM  + K+ RV++++D  APH+VL VLDAT GQNAL QVE 
Sbjct: 192 DNRDVLLIDTAGRLQNKAELMVELEKVARVIRKVDASAPHAVLLVLDATVGQNALSQVEA 251

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   AG TGL+MTK+DGTARGG L+ I  T+K+PV+F+GVGEGI+DL PF A DF+  I 
Sbjct: 252 FRKTAGVTGLVMTKLDGTARGGILVAISETYKLPVHFIGVGEGIDDLAPFTAHDFALAIA 311

Query: 312 G 312
           G
Sbjct: 312 G 312


>gi|316931820|ref|YP_004106802.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris DX-1]
 gi|315599534|gb|ADU42069.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris DX-1]
          Length = 315

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 155/302 (51%), Positives = 209/302 (69%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW R+L+ G   TS  +   +++ +S R+LD  + EE+ED+L+R+D+G  VA +I   + 
Sbjct: 11  SWWRRLSSGLKRTSSSIGTALSEFVSKRKLDRAMLEEIEDVLLRADLGAEVASRIASAVG 70

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY K +S   V   V+  + K+L P+++P   D   +P V+L+VGVNG GKTT IGKL
Sbjct: 71  EGRYDKMISASDVKEIVAAEVEKVLAPVAQPLVVDAGKKPFVVLMVGVNGSGKTTTIGKL 130

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S + +  G KVMLAAGDTFR+AAIDQLK+W +RT    V    GSDAA LA+ A   A+ 
Sbjct: 131 SARFASEGHKVMLAAGDTFRAAAIDQLKVWGERTGTPVVAGAQGSDAAGLAFNALTAAKE 190

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVL+IDTAGRL N + LM+ + K++RV+K++D  APH+VL VLDAT GQNAL QVE 
Sbjct: 191 QGRDVLLIDTAGRLQNRTELMSELEKVVRVIKKVDATAPHAVLLVLDATVGQNALSQVEA 250

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   AG TGL+MTK+DGTARGG L+ I   HK+PV+F+GVGEG++DL PF A+DF+  I 
Sbjct: 251 FTKTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVDDLSPFTARDFAKAIA 310

Query: 312 GC 313
           G 
Sbjct: 311 GT 312


>gi|323137224|ref|ZP_08072303.1| signal recognition particle-docking protein FtsY [Methylocystis sp.
           ATCC 49242]
 gi|322397582|gb|EFY00105.1| signal recognition particle-docking protein FtsY [Methylocystis sp.
           ATCC 49242]
          Length = 353

 Score =  315 bits (807), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 150/302 (49%), Positives = 212/302 (70%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  +LT G A TS  + +G+ DI + R+LD    EELED+L+R+D+GV  A +I + + 
Sbjct: 40  SWWSRLTGGLARTSQAISQGVADIFTKRKLDALTLEELEDVLLRADLGVGAAMRITKAVG 99

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY KD+    V   ++  +  +L P++ PF  D S +P ++LVVGVNG GKTT I KL
Sbjct: 100 KARYEKDIEPDEVRAILAREVEAVLEPVAVPFEIDESKKPFIVLVVGVNGSGKTTTIAKL 159

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K +  G KV+LAAGDTFR+AA++QL+IW  R  A+ V    G+DAA LA++A K+A  
Sbjct: 160 ASKWTGEGKKVVLAAGDTFRAAAVEQLRIWGARLDAEVVAGNEGADAAGLAFDAIKRAGE 219

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++++DTAGRL N + LMA + K++RV+K+ +P APH+VL VLDAT GQNA++QVE+
Sbjct: 220 SGADIMLMDTAGRLQNRAELMAELEKIVRVMKKAEPEAPHAVLLVLDATVGQNAMQQVEV 279

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +AG TGL+MTK+DGTARGG L+ I   + +P++F+GVGEG +DLEPF A+DF+  I 
Sbjct: 280 FQRMAGVTGLVMTKLDGTARGGILVAIAEAYGLPIHFIGVGEGQDDLEPFTARDFARAIA 339

Query: 312 GC 313
           G 
Sbjct: 340 GL 341


>gi|296448346|ref|ZP_06890235.1| signal recognition particle-docking protein FtsY [Methylosinus
           trichosporium OB3b]
 gi|296254138|gb|EFH01276.1| signal recognition particle-docking protein FtsY [Methylosinus
           trichosporium OB3b]
          Length = 346

 Score =  315 bits (807), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 151/309 (48%), Positives = 219/309 (70%), Gaps = 1/309 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  +LT G + +S  + +GI+D+ + R+LD    EELED+L+R+D+G+A AQ+I   + 
Sbjct: 34  SWWERLTGGLSRSSQAIVQGISDLFTKRKLDALTLEELEDVLVRADLGLAAAQRISATVG 93

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY K +    V   ++E + ++L P+++PF  D S +P ++LVVGVNG GKTT I KL
Sbjct: 94  KARYEKTIGPDEVRAILAEEVERVLAPVARPFELDESKKPFIVLVVGVNGSGKTTTIAKL 153

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K +  G KVMLAAGDTFR+AA++QL+ W +R +     +  G+DAA LA++A K A+ 
Sbjct: 154 AAKWTAEGRKVMLAAGDTFRAAAVEQLRFWGERLNVSVCYAPEGADAAGLAFDAIKSARE 213

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+L++DTAGRL N + LMA + K++RV+K+ +P APH+VL VLDAT GQNA+ QV++
Sbjct: 214 RGSDILLMDTAGRLQNRTELMAELAKIVRVMKKAEPEAPHAVLLVLDATVGQNAVAQVDV 273

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +AG TGL+MTK+DGTARGG L+ I   + +P++F+GVGEG  DLEPF A+DF+  I 
Sbjct: 274 FGKIAGVTGLVMTKLDGTARGGILVAIAEAYGLPIHFIGVGEGAEDLEPFTARDFARAIA 333

Query: 312 GCLDYGEEK 320
           G L+  EEK
Sbjct: 334 G-LEGDEEK 341


>gi|163852142|ref|YP_001640185.1| signal recognition particle-docking protein FtsY [Methylobacterium
           extorquens PA1]
 gi|163663747|gb|ABY31114.1| signal recognition particle-docking protein FtsY [Methylobacterium
           extorquens PA1]
          Length = 488

 Score =  314 bits (805), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 156/305 (51%), Positives = 206/305 (67%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE   W  +LT G   TS  L + +T + + R+LD    E+LED LI++D GV  A ++ 
Sbjct: 180 SEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETAARMS 239

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E +   RY K +S   V   ++  I + L P++ P   D + +P+VIL VGVNG GKTT 
Sbjct: 240 EAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTTT 299

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKLS K    G  VMLAAGDTFR+AAI+QL++W DRT    +    GSDAA LA++AFK
Sbjct: 300 IGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAFK 359

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+    DVL+IDTAGRL N + LMA + K++RV+++LDP APHS L VLDAT GQNAL 
Sbjct: 360 EARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHSTLLVLDATVGQNALS 419

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QVE+F   A  +GL+MTK+DGTARGG L+ +     +PV+F+GVGEG+ DLEPF A+DF+
Sbjct: 420 QVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDFA 479

Query: 308 AVITG 312
             ITG
Sbjct: 480 RAITG 484


>gi|304392647|ref|ZP_07374587.1| cell division protein FtsY [Ahrensia sp. R2A130]
 gi|303295277|gb|EFL89637.1| cell division protein FtsY [Ahrensia sp. R2A130]
          Length = 585

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/302 (49%), Positives = 210/302 (69%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +W  ++  G + +S +L   +  + + ++LD+   E+LED+L+++D+GV  A  I + L 
Sbjct: 278 TWFARMRSGLSRSSNQLTSNVAAVFTKKKLDEETLEQLEDVLLQADLGVETAVAITDALA 337

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +R  KD++   V   ++  I K L P++     D  H PHVILVVGVNG GKTT IGKL
Sbjct: 338 DQRMGKDITDLEVREFMAAEIEKTLDPVAAELELDLEHTPHVILVVGVNGSGKTTTIGKL 397

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S+K+ DAG   +L AGDTFR+AAI+QLKIW DRT +     ++G+D+A LAY+A+ +A  
Sbjct: 398 SQKLYDAGFSTLLVAGDTFRAAAIEQLKIWGDRTQSPVAFRDLGADSAGLAYDAYAKALD 457

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV+++DTAGRL N + LM  + K+IRVLK+ DP APH+VL  LDATTGQNAL QVE+
Sbjct: 458 EGQDVMLMDTAGRLQNKTELMDELRKIIRVLKKQDPTAPHTVLLTLDATTGQNALSQVEI 517

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG  GL+MTK+DGTARGG ++ +   HK+PVYF+GVGE ++DLEPF A+DF+  I 
Sbjct: 518 FKEVAGVNGLVMTKLDGTARGGIMVSLAAKHKLPVYFIGVGEQVDDLEPFEARDFARSIA 577

Query: 312 GC 313
           G 
Sbjct: 578 GL 579


>gi|254470691|ref|ZP_05084094.1| signal recognition particle-docking protein FtsY [Pseudovibrio sp.
           JE062]
 gi|211959833|gb|EEA95030.1| signal recognition particle-docking protein FtsY [Pseudovibrio sp.
           JE062]
          Length = 517

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 158/304 (51%), Positives = 217/304 (71%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW ++L  G + +S  L EGI+ I + R+LD    EELED+LI++D+G+  A  I + + 
Sbjct: 211 SWFQRLKAGLSRSSNALTEGISSIFTKRKLDADTLEELEDILIQADLGIDTAIAITDRVS 270

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY K++S + V   +++ I  +L P++KP + +  H+PH++L+VGVNG GKTT IGKL
Sbjct: 271 DGRYDKEISGEEVRAILADEIESVLEPVAKPLDLNIGHKPHIVLMVGVNGTGKTTTIGKL 330

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S  + + G KVMLAAGDTFR+AA++QLK+W  RT A+ V  + G+DAA LAY+A   A +
Sbjct: 331 SSLLHEQGKKVMLAAGDTFRAAAVEQLKVWGQRTGAEVVARDTGADAAGLAYDAVDAALS 390

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL+IDTAGRL N + LM  + K+IRV+++  P APH+ L  LDATTGQNAL QVE+
Sbjct: 391 NDTDVLLIDTAGRLQNKAELMDELEKIIRVIRKRVPDAPHTTLLTLDATTGQNALSQVEI 450

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG TGL+MTK+DGTARGG L+ I   + +PV+F+GVGEG++DLEPF AKDF+A I 
Sbjct: 451 FGKVAGVTGLVMTKLDGTARGGILVAIARKYGLPVHFIGVGEGVDDLEPFSAKDFAAAIA 510

Query: 312 GCLD 315
           G  D
Sbjct: 511 GKDD 514


>gi|86747488|ref|YP_483984.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris HaA2]
 gi|86570516|gb|ABD05073.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris HaA2]
          Length = 315

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 154/302 (50%), Positives = 211/302 (69%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW R+L+ G   TS  +   +++ IS R+LD  + +E+ED+L+R+D+G  VA +I + + 
Sbjct: 11  SWWRRLSSGLKRTSSSIGTALSEFISKRKLDRAMLDEIEDVLLRADLGTEVATRISDAVG 70

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY K +S   V   V+  + K+L P++KP   D + +P V+LVVGVNG GKTT IGKL
Sbjct: 71  EGRYDKMISAGDVKEIVAAEVEKVLAPVAKPLVIDRAKKPFVVLVVGVNGSGKTTTIGKL 130

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S + +  G KVM+AAGDTFR+AAI+QLK+W +RT    +    GSD+A+LA+ A   A+ 
Sbjct: 131 SARYAAEGHKVMMAAGDTFRAAAIEQLKVWGERTGTPVIAGAQGSDSASLAFNALTTAKE 190

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVL+IDTAGRL N + LM  +GK++RV+K++D  APH+VL VLDAT GQNAL QVE 
Sbjct: 191 QARDVLLIDTAGRLQNRTELMNELGKVVRVIKKVDDTAPHAVLLVLDATVGQNALSQVEA 250

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   AG TGL+MTK+DGTARGG L+ I   HK+PV+F+GVGEG+ DL PF A+DF+  I 
Sbjct: 251 FTKTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVEDLAPFTARDFAQAIA 310

Query: 312 GC 313
           G 
Sbjct: 311 GT 312


>gi|240139474|ref|YP_002963949.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein [Methylobacterium extorquens AM1]
 gi|240009446|gb|ACS40672.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein [Methylobacterium extorquens AM1]
          Length = 488

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 155/305 (50%), Positives = 206/305 (67%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE   W  +LT G   TS  L + +T + + R+LD    E+LED LI++D GV  A ++ 
Sbjct: 180 SEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETATRMS 239

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E +   RY K +S   V   ++  I + L P++ P   D + +P+VIL VGVNG GKTT 
Sbjct: 240 EAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTTT 299

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKLS K    G  VMLAAGDTFR+AAI+QL++W DRT    +    GSDAA LA++AFK
Sbjct: 300 IGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAFK 359

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+    DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL 
Sbjct: 360 EARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNALS 419

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QVE+F   A  +GL+MTK+DGTARGG L+ +     +PV+F+GVGEG+ DLEPF A+DF+
Sbjct: 420 QVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDFA 479

Query: 308 AVITG 312
             ITG
Sbjct: 480 RAITG 484


>gi|254561888|ref|YP_003068983.1| fused Signal Recognition Particle [Methylobacterium extorquens DM4]
 gi|254269166|emb|CAX25132.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein [Methylobacterium extorquens DM4]
          Length = 488

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 155/305 (50%), Positives = 206/305 (67%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE   W  +LT G   TS  L + +T + + R+LD    E+LED LI++D GV  A ++ 
Sbjct: 180 SEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETATRMS 239

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E +   RY K +S   V   ++  I + L P++ P   D + +P+VIL VGVNG GKTT 
Sbjct: 240 EAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTTT 299

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKLS K    G  VMLAAGDTFR+AAI+QL++W DRT    +    GSDAA LA++AFK
Sbjct: 300 IGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAFK 359

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+    DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL 
Sbjct: 360 EARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNALS 419

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QVE+F   A  +GL+MTK+DGTARGG L+ +     +PV+F+GVGEG+ DLEPF A+DF+
Sbjct: 420 QVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDFA 479

Query: 308 AVITG 312
             ITG
Sbjct: 480 RAITG 484


>gi|218530901|ref|YP_002421717.1| signal recognition particle-docking protein FtsY [Methylobacterium
           chloromethanicum CM4]
 gi|218523204|gb|ACK83789.1| signal recognition particle-docking protein FtsY [Methylobacterium
           chloromethanicum CM4]
          Length = 488

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 155/305 (50%), Positives = 206/305 (67%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE   W  +LT G   TS  L + +T + + R+LD    E+LED LI++D GV  A ++ 
Sbjct: 180 SEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETATRMS 239

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E +   RY K +S   V   ++  I + L P++ P   D + +P+VIL VGVNG GKTT 
Sbjct: 240 EAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTTT 299

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKLS K    G  VMLAAGDTFR+AAI+QL++W DRT    +    GSDAA LA++AFK
Sbjct: 300 IGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAFK 359

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+    DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL 
Sbjct: 360 EARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNALS 419

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QVE+F   A  +GL+MTK+DGTARGG L+ +     +PV+F+GVGEG+ DLEPF A+DF+
Sbjct: 420 QVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDFA 479

Query: 308 AVITG 312
             ITG
Sbjct: 480 RAITG 484


>gi|91974997|ref|YP_567656.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris BisB5]
 gi|91681453|gb|ABE37755.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris BisB5]
          Length = 315

 Score =  312 bits (800), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 153/306 (50%), Positives = 212/306 (69%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           ++  SW R+L+ G   TS  +   +++ IS R+LD  + +E+ED+L+R+D+G  VA +I 
Sbjct: 7   TQKPSWWRRLSSGLKRTSSSIGTALSEFISKRKLDRAMLDEIEDVLLRADLGTEVASRIS 66

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + +   RY K +S   V   V+  + K+L P++KP   D + +P V+LVVGVNG GKTT 
Sbjct: 67  DAVGEGRYDKMISASDVKEIVASEVEKVLAPVAKPLVIDDAKKPFVVLVVGVNGSGKTTT 126

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKLS + +  G KVM+AAGDTFR+AAI+QLK+W +RT    +    GSD+A+LA+ A  
Sbjct: 127 IGKLSARFAAEGRKVMMAAGDTFRAAAIEQLKVWGERTGTPVIAGAQGSDSASLAFNALT 186

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ +  DVL+IDTAGRL N   LM+ + K++RV+K++D  APH+VL VLDAT GQNAL 
Sbjct: 187 AAKEQGRDVLLIDTAGRLQNRKELMSELEKVVRVIKKVDDTAPHAVLLVLDATVGQNALS 246

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QVE F   AG TGL+MTK+DGTARGG L+ I   HK+PV+F+GVGEG+ DL PF A+DF+
Sbjct: 247 QVEAFTRTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVEDLSPFTARDFA 306

Query: 308 AVITGC 313
             I G 
Sbjct: 307 QAIAGT 312


>gi|188582090|ref|YP_001925535.1| signal recognition particle-docking protein FtsY [Methylobacterium
           populi BJ001]
 gi|179345588|gb|ACB81000.1| signal recognition particle-docking protein FtsY [Methylobacterium
           populi BJ001]
          Length = 493

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 153/305 (50%), Positives = 206/305 (67%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +E   W  +LT G   TS  L + +T + + R+LD    E+LED LI++D GV  A ++ 
Sbjct: 185 TEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETAMRMS 244

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E +   RY K +S   V   ++  I + L P++ P   D + +P+VIL VGVNG GKTT 
Sbjct: 245 EAVGKGRYEKGISPDEVRAILATEIERALEPVATPIAIDSAKKPYVILTVGVNGAGKTTT 304

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKLS K    G  VMLAAGDTFR+AAI+QL++W +RT    +    GSDAA LA++AFK
Sbjct: 305 IGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGERTGTPVISRAQGSDAAGLAFDAFK 364

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+    DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL 
Sbjct: 365 EARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNALS 424

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QVE+F   A  +GL+MTK+DGTARGG L+ +     +PV+F+GVGEG+ DLEPF A+DF+
Sbjct: 425 QVELFSQAAPVSGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVEDLEPFAARDFA 484

Query: 308 AVITG 312
             ITG
Sbjct: 485 RAITG 489


>gi|182677358|ref|YP_001831504.1| signal recognition particle-docking protein FtsY [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633241|gb|ACB94015.1| signal recognition particle-docking protein FtsY [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 408

 Score =  310 bits (795), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 157/309 (50%), Positives = 214/309 (69%), Gaps = 1/309 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  +L  G + +S  +  G+ DI + R+LD+ + E+LED+LIR+D+G AVAQ+I E + 
Sbjct: 100 SWWTRLRDGLSRSSSSIGTGLVDIFTKRKLDEAMLEDLEDILIRADLGTAVAQRITEAVG 159

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY  DV  + V   ++  + ++L P +KP   D + +P VILVVGVNG GKTT IGKL
Sbjct: 160 KGRYNWDVDPREVKTILASEVEQVLTPYAKPLVIDTTKKPFVILVVGVNGSGKTTTIGKL 219

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + + S  G KVMLAAGDTFR+AAI+QL+IW  R     +    GSDA+ LA++A K A++
Sbjct: 220 AAQFSREGHKVMLAAGDTFRAAAIEQLQIWGQRLGCTVIARPQGSDASGLAFDAIKTARS 279

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+L++DTAGRL N + LM  + K+IRV+++ D  APH+VL VLDAT GQNAL QVE+
Sbjct: 280 EGADLLLMDTAGRLQNRAELMDELEKIIRVMRKQDEEAPHAVLLVLDATVGQNALNQVEI 339

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG TGL+MTK+DGTARGG L+ I    K+P++F+GVGE ++DLEPF A DF   I 
Sbjct: 340 FGRVAGVTGLVMTKLDGTARGGILVAITEKFKLPIHFIGVGEKVDDLEPFAASDFGLAIA 399

Query: 312 GCLDYGEEK 320
           G LD  E +
Sbjct: 400 G-LDKDESQ 407


>gi|115522346|ref|YP_779257.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris BisA53]
 gi|115516293|gb|ABJ04277.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris BisA53]
          Length = 316

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 153/310 (49%), Positives = 213/310 (68%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           N    S+  SW R+L+ G   TS  +   + + +S R+LD  + EE+ED+L+R+D+G  V
Sbjct: 2   NDTSESKKPSWWRRLSSGLKRTSSSIGTALAEFVSKRKLDRAMLEEIEDVLLRADLGTEV 61

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + +I   +   RY K +S   V   V+  + K+L P+++P   D + +P VIL+VGVNG 
Sbjct: 62  SARIAAAVGEGRYDKMISASDVKEIVAAEVEKVLAPVARPLVIDGAKKPFVILMVGVNGS 121

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ ++S  G KVMLAAGDTFR+AAI+QLK+W +RT +  V    GSD+A+LA
Sbjct: 122 GKTTTIGKLAARLSGEGRKVMLAAGDTFRAAAIEQLKVWGERTGSPVVAGAQGSDSASLA 181

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           + A  QA+ +  DVL+IDTAGRL N + LM  + K++RV++++D  APH+VL VLDAT G
Sbjct: 182 FNALTQAKDEGRDVLLIDTAGRLQNRTELMNELEKVVRVIRKVDSSAPHAVLLVLDATVG 241

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QVE F   AG TGL+MTK+DGTARGG L+ +   HK+PV+F+GVGE ++DL PF 
Sbjct: 242 QNALSQVEAFSRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGESVDDLAPFT 301

Query: 303 AKDFSAVITG 312
           A DF+  I G
Sbjct: 302 APDFAKAIAG 311


>gi|23015509|ref|ZP_00055283.1| COG0552: Signal recognition particle GTPase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 330

 Score =  308 bits (790), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 148/304 (48%), Positives = 212/304 (69%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E+ SW  +L  G A +S KL +G+ D+ + R+LDD   E+LEDLLI +D+GVA A ++ +
Sbjct: 25  ETASWFGRLKSGLAKSSSKLTQGLGDLFTKRKLDDEALEDLEDLLITADLGVATAARVTK 84

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            L   R+ +DV+   +   ++E I ++L P+++P   D + +PHV+LVVGVNG GKTT I
Sbjct: 85  HLAKTRFGQDVTSDEIKATLAEEITRILAPVARPLAIDPNRKPHVVLVVGVNGSGKTTTI 144

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++K   DAGL V LAAGDTFR+AA++QLK+W +RT+   +  E G+DAA LAY+A +Q
Sbjct: 145 GKMAKTYKDAGLSVTLAAGDTFRAAAVEQLKVWGERTNCPVIARETGADAAGLAYDAVEQ 204

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           ++A+  D+L IDTAGRL N + LMA + K++R +K++D  APHSVL VLDAT GQNA  Q
Sbjct: 205 SRARGDDLLFIDTAGRLQNKADLMAELAKLVRSIKKVDETAPHSVLLVLDATVGQNAHSQ 264

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           VE+F  +   +GL++TK+DGTARGG L+ +     +PV+ +GVGE   DL PF A  F+ 
Sbjct: 265 VEIFKDMVAVSGLVLTKLDGTARGGVLVALAEKFGLPVHAIGVGEKAEDLRPFEADAFAK 324

Query: 309 VITG 312
            + G
Sbjct: 325 SLVG 328


>gi|220924283|ref|YP_002499585.1| signal recognition particle-docking protein FtsY [Methylobacterium
           nodulans ORS 2060]
 gi|219948890|gb|ACL59282.1| signal recognition particle-docking protein FtsY [Methylobacterium
           nodulans ORS 2060]
          Length = 437

 Score =  308 bits (789), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 151/300 (50%), Positives = 205/300 (68%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W  +LT G   TS  L E +T + + R+LD    EELED LI++D GV  A +I E +  
Sbjct: 133 WWSRLTGGLRRTSSALSERVTGLFTKRKLDATTLEELEDALIQADFGVETAMRISEAVGK 192

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            RY K ++   V   ++  + + L P+++P   D   +P V+L+VGVNG GKTT IGKL+
Sbjct: 193 GRYEKGIAPDEVRAILATEVERALEPVARPLALDPGAKPFVLLMVGVNGAGKTTTIGKLA 252

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +K    G  VMLAAGDTFR+AAI+QLK+W +RT A  V    G+DAA LA++A + A+  
Sbjct: 253 QKFRAQGRSVMLAAGDTFRAAAIEQLKVWGERTGAPVVTRPQGADAAGLAFDALQAARES 312

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DVL+IDTAGRL N + LMA + K++RV+++LD  APH+VL VLDAT GQNA+ QVE+F
Sbjct: 313 GTDVLMIDTAGRLQNKAGLMAELEKIVRVIRKLDESAPHAVLLVLDATVGQNAISQVELF 372

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              AG TGL+MTK+DGTARGG L+ +     +PV+F+GVGEG++DLEPF A+DF+  I G
Sbjct: 373 QKTAGVTGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVDDLEPFTARDFARAIAG 432


>gi|298293311|ref|YP_003695250.1| signal recognition particle-docking protein FtsY [Starkeya novella
           DSM 506]
 gi|296929822|gb|ADH90631.1| signal recognition particle-docking protein FtsY [Starkeya novella
           DSM 506]
          Length = 318

 Score =  308 bits (788), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 153/301 (50%), Positives = 210/301 (69%), Gaps = 1/301 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W ++LT+G   T+  L  GITD+ + R+LD    EELED+LIR+D+GV  + +I E +  
Sbjct: 17  W-KRLTQGLTRTASGLSTGITDLFTKRKLDATTLEELEDVLIRADLGVETSARIAEAVGK 75

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            RY K +  + V   V+  I  +L P++ P  ++   +P V+L+VGVNG GKTT IGKL+
Sbjct: 76  GRYDKGIDPEEVRNLVAAEIEAVLTPVAHPLAFNTGAKPFVLLMVGVNGSGKTTTIGKLA 135

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             +   G KV+LAAGDTFR+AAI+QLK+WADRT A  V    G+DAA +A++  +QA+  
Sbjct: 136 STLRAQGKKVVLAAGDTFRAAAIEQLKVWADRTGAAIVARPPGADAAGVAFDGLQQAREV 195

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DVLIIDTAGRL N + LMA + K++RV+K+ D  APH+V+  LDAT GQNAL+QVE F
Sbjct: 196 GADVLIIDTAGRLQNRAELMAELEKVVRVIKKQDASAPHAVVLTLDATVGQNALQQVEAF 255

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             VAG TGL+MTK+DGTARGG L+ I   + +PV+ +G+GEGI+DL+PF A+DF+  I G
Sbjct: 256 RRVAGVTGLVMTKLDGTARGGILVAIAAKYGLPVHMIGIGEGIDDLQPFAARDFARAIVG 315

Query: 313 C 313
            
Sbjct: 316 L 316


>gi|170741579|ref|YP_001770234.1| signal recognition particle-docking protein FtsY [Methylobacterium
           sp. 4-46]
 gi|168195853|gb|ACA17800.1| signal recognition particle-docking protein FtsY [Methylobacterium
           sp. 4-46]
          Length = 473

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 150/304 (49%), Positives = 207/304 (68%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E   W  +LT G   TS  L E +T + + R+LD    EELED LI++D GV  A +I E
Sbjct: 165 ERRGWWSRLTGGLRRTSSALSERVTGLFTKRKLDATTLEELEDALIQADFGVETATRIAE 224

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +   RY K +S   V   ++  + + L P+++P   + + +P V+L+VGVNG GKTT I
Sbjct: 225 AVGKGRYEKGISPDEVRAILAAEVERALEPVARPLTLEGAAKPFVLLMVGVNGAGKTTTI 284

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++K    G  VMLAAGDTFR+AAI+QLK+W +RT A  +    G+DAA LA++A + 
Sbjct: 285 GKLAQKFRAQGRSVMLAAGDTFRAAAIEQLKVWGERTGAPVLSRPQGADAAGLAFDALQA 344

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DVL+IDTAGRL N + LMA + K++RV+++LD  APH+VL VLDAT GQNA+ Q
Sbjct: 345 AREAGTDVLMIDTAGRLQNKAGLMAELEKIVRVIRKLDETAPHAVLLVLDATVGQNAISQ 404

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           VE+F   AG +GL+MTK+DGTARGG L+ +     +PV+F+GVGEG++DLEPF A+DF+ 
Sbjct: 405 VELFQKTAGVSGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVDDLEPFTARDFAR 464

Query: 309 VITG 312
            I G
Sbjct: 465 AIAG 468


>gi|90421736|ref|YP_530106.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris BisB18]
 gi|90103750|gb|ABD85787.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris BisB18]
          Length = 316

 Score =  305 bits (780), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 150/311 (48%), Positives = 210/311 (67%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           N    ++  SW R+L+ G   TS  +   + + ++ R+LD  + +E+ED+L+R+D+G  V
Sbjct: 2   NDTTETKKPSWWRRLSSGLKRTSSSIGTALAEFVTKRKLDRAMLDEIEDVLLRADLGTEV 61

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + +I   +   RY K +S   V   V+  + K+L P+++P   D +H+P VIL+VGVNG 
Sbjct: 62  SARIAAAVGVGRYDKMISAGDVKTIVAAEVEKVLAPVAQPLVIDAAHKPFVILMVGVNGS 121

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ K +  G KVMLAAGDTFR+AAI+QLK+W +RT A  +    GSD+A LA
Sbjct: 122 GKTTTIGKLAAKFAAEGRKVMLAAGDTFRAAAIEQLKVWGERTGAPVISGTQGSDSAGLA 181

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           + A   A+  + DVL+IDTAGRL N + LM  + K++RV+K++D  APH+VL VLDAT G
Sbjct: 182 FTALTAAKDDRRDVLLIDTAGRLQNKAELMNELEKVVRVIKKVDATAPHAVLLVLDATVG 241

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QVE F   AG TGL+MTK+DGTARGG L+ +   +K+PV+F+GVGE + DL PF 
Sbjct: 242 QNALSQVEAFSRTAGVTGLVMTKLDGTARGGILVALAEKYKLPVHFVGVGESVEDLAPFT 301

Query: 303 AKDFSAVITGC 313
           A DF+  I G 
Sbjct: 302 AADFAKAIAGT 312


>gi|170751708|ref|YP_001757968.1| signal recognition particle-docking protein FtsY [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658230|gb|ACB27285.1| signal recognition particle-docking protein FtsY [Methylobacterium
           radiotolerans JCM 2831]
          Length = 466

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 151/305 (49%), Positives = 202/305 (66%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
            E+  W  +LT G   TS  L + +T + + R+LD    E+LED LI++D G+  A ++ 
Sbjct: 158 PEAKGWWSRLTSGMKRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGLETAMRVS 217

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E +   RY K +S   V   ++  + + L P++ P   D + +P VIL VGVNG GKTT 
Sbjct: 218 EAVGKGRYEKGISPDEVRAILAAEVERALEPVAVPLTIDAARKPFVILTVGVNGAGKTTT 277

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +GKL+ K+   G  VMLAAGDTFR+AAIDQLK+W  RT    V    G+DAA LA++A K
Sbjct: 278 LGKLASKLRAEGRTVMLAAGDTFRAAAIDQLKVWGARTGTPVVSGAQGADAAGLAFDALK 337

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA A   DVL+IDTAGRL N + LMA + K++RVL++ DP APH+ L VLDAT GQNAL 
Sbjct: 338 QAGAAGTDVLLIDTAGRLQNKAGLMAELEKIVRVLRKQDPDAPHATLLVLDATVGQNALS 397

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QVE+F   A  +GL+MTK+DGTARGG L+ +     +PV+F+GVGEG+ DLEPF A+DF+
Sbjct: 398 QVELFSQAAPVSGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVEDLEPFAARDFA 457

Query: 308 AVITG 312
             I G
Sbjct: 458 RAIAG 462


>gi|209883417|ref|YP_002287274.1| signal recognition particle-docking protein FtsY [Oligotropha
           carboxidovorans OM5]
 gi|209871613|gb|ACI91409.1| signal recognition particle-docking protein FtsY [Oligotropha
           carboxidovorans OM5]
          Length = 318

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 156/301 (51%), Positives = 213/301 (70%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW ++L+ G   TS  +   + D++  R+LD  + E++ED+L+R+D+G  VA +I  ++ 
Sbjct: 12  SWWQRLSAGLKRTSGSIGAAVADLVVKRKLDRAMLEDIEDVLLRADLGTEVAARIAAKVG 71

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY KDVS Q V   V+  + K+L P++ P   D S +P +ILVVGVNG GKTT IGKL
Sbjct: 72  EGRYDKDVSAQDVQAIVAAEVEKVLAPVAMPLVIDESQKPFIILVVGVNGSGKTTTIGKL 131

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K +  G +VMLAAGDTFR+AAI+QLKIW +RT A  +  + GSDAA+LA++A   A+A
Sbjct: 132 AAKFAAEGRRVMLAAGDTFRAAAIEQLKIWGERTGAPVIARDHGSDAASLAFDAASAAKA 191

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL+IDTAGRL N + LM  + K+ RV++++D  APH+VL VLDAT GQNAL QVE 
Sbjct: 192 DNRDVLLIDTAGRLQNKAELMVELEKVARVIRKVDTSAPHAVLLVLDATVGQNALSQVEA 251

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   AG TGL+MTK+DGTARGG L+ I   +K+PV+F+GVGEG++DL PF A+DF+  I 
Sbjct: 252 FRKTAGVTGLVMTKLDGTARGGILVAISEIYKLPVHFIGVGEGVDDLAPFTARDFAHAIA 311

Query: 312 G 312
           G
Sbjct: 312 G 312


>gi|109649512|gb|ABG36707.1| FtsY [Bartonella australis]
          Length = 366

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/299 (48%), Positives = 208/299 (69%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S   V  +  +W  +L KG + +S +L   I D+    +L     +EL D+  ++D+GV
Sbjct: 68  LSEPSVEQKKTAWFGRLKKGLSLSSQRLSGSICDLFVKEKLVKDTLQELGDIPFQADLGV 127

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A  I + + + RY K +S   +   ++  I K+L P++ P   D +H+PHVIL+VGVN
Sbjct: 128 ETAAHITDTIASSRYEKSLSPDNIHTIMANEIEKILEPVAIPLELDLNHKPHVILLVGVN 187

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++ +GLKV LAAGDTFR+AAI+QL +W +RT +  V +++G+DAA+
Sbjct: 188 GTGKTTTIGKLAAKLTASGLKVTLAAGDTFRAAAIEQLHVWGERTRSPVVSTKLGADAAS 247

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++A+++A+ +  DVLIIDTAGRL N + LM  + K+IRVL +  P APH+VLQ LDAT
Sbjct: 248 LAFDAYEKAKKENSDVLIIDTAGRLQNKTELMDELAKIIRVLGKHTPKAPHTVLQTLDAT 307

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TGQNAL QV++F  VAG  GL+MTK+DG+ARGG L+ I   +K+PVYF+GVGE I DL+
Sbjct: 308 TGQNALNQVDIFRDVAGVNGLVMTKLDGSARGGILVAIASKYKLPVYFIGVGENIEDLQ 366


>gi|83592517|ref|YP_426269.1| signal recognition particle-docking protein FtsY [Rhodospirillum
           rubrum ATCC 11170]
 gi|83575431|gb|ABC21982.1| signal recognition particle-docking protein FtsY [Rhodospirillum
           rubrum ATCC 11170]
          Length = 506

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 141/297 (47%), Positives = 214/297 (72%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S+  +L  G + TS KL  GI  ++S R+LDD   E+LEDLLI +DIGV  A K+   L
Sbjct: 203 VSFFARLRGGLSRTSGKLVGGIMGLVSERKLDDQALEDLEDLLITADIGVETAGKLTRSL 262

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +R+ K+V+ + +    ++ I  +L P+++P   D S +PHV+LVVGVNG GKTT IGK
Sbjct: 263 AKERFGKNVTGEEIRGHFADEIATILGPVARPLEIDGSLKPHVVLVVGVNGSGKTTTIGK 322

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ ++     +V+LAAGDTFR+AA++QL+IW DRT  + +  + G+D+A LA++A ++A+
Sbjct: 323 IANQLVHENKRVLLAAGDTFRAAAVEQLRIWGDRTGCEVIARDTGADSAGLAFDALQKAR 382

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DVL+IDTAGRLHN + LM  + K++RVL+++DP  PH+ LQVLDAT GQNA +QV+
Sbjct: 383 AEGYDVLLIDTAGRLHNKTELMEELKKVVRVLRKIDPAVPHTCLQVLDATVGQNAHQQVK 442

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           +F  +   +GL+MTK+DGTA+GG ++ +     +PV+++G+GEGI+DL PF A+DF+
Sbjct: 443 VFQEMTDVSGLVMTKLDGTAKGGVVVALADKFGLPVHYVGIGEGIDDLRPFSARDFA 499


>gi|217979345|ref|YP_002363492.1| signal recognition particle-docking protein FtsY [Methylocella
           silvestris BL2]
 gi|217504721|gb|ACK52130.1| signal recognition particle-docking protein FtsY [Methylocella
           silvestris BL2]
          Length = 483

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 145/300 (48%), Positives = 208/300 (69%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W  +L +G A +S  +  G+  I + R+LD  + +ELE++LIR+D+GVA A  I   +  
Sbjct: 175 WWTRLRQGLARSSDSIGSGLKAIFTKRKLDAAMLDELEEVLIRADLGVATATHIAGLVGK 234

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            RY K + V  V   ++E + ++L P ++P   D + +P VILVVGVNG GKTT IGKL+
Sbjct: 235 GRYDKSIEVDEVKTILAEEVERVLAPYARPLEIDPAIKPFVILVVGVNGSGKTTTIGKLA 294

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            + S  G KV+LAAGDTFR+AAI+QL++W DR +   +    GSDA+ALA++A + A+  
Sbjct: 295 AQFSQEGRKVLLAAGDTFRAAAIEQLRLWGDRLNCAVIAGNQGSDASALAFDAIRAARES 354

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D+LI+DTAGRL N + LMA + K++RV+K+++P APH+VL VLDAT GQNA+ Q E+F
Sbjct: 355 GADILIMDTAGRLQNRAELMAELEKIVRVMKKVEPAAPHAVLLVLDATVGQNAVSQTEIF 414

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             VAG TGL+MTK+DGTARGG L+ +    ++P++++GVGE   DL PF A+DF+  I G
Sbjct: 415 SKVAGVTGLVMTKLDGTARGGILVALAEKFQLPIHYVGVGETAADLAPFAARDFARAIAG 474


>gi|158425332|ref|YP_001526624.1| cell division transporter substrate-binding protein [Azorhizobium
           caulinodans ORS 571]
 gi|158332221|dbj|BAF89706.1| cell division transporter substrate-binding protein [Azorhizobium
           caulinodans ORS 571]
          Length = 313

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 154/304 (50%), Positives = 215/304 (70%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E   + R+LT G A T+  L +GITD+++ R+LD    EELEDLLIR+D+G A A +IVE
Sbjct: 8   EKPGFWRRLTSGLARTATSLTQGITDLVTKRKLDAETLEELEDLLIRADLGTATAARIVE 67

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +   R+ K ++   V   ++  + ++L P++KPF  D   +P V+L+VGVNG GKTT I
Sbjct: 68  AVGKGRHDKMIAPDEVKGLIASEVEEILGPVAKPFVPDAGQKPFVVLMVGVNGSGKTTTI 127

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +    G ++ LAAGDTFR+AAI+QLK+W  RT A  V  E G+DAA +A++A  +
Sbjct: 128 GKLAAQWRSEGKRLTLAAGDTFRAAAIEQLKVWGARTGAHVVAREQGADAAGVAHDAITE 187

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A   D+++IDTAGRL N + LM  + K++RV+K+L+P APH+VL VLDAT GQNAL Q
Sbjct: 188 ARANGSDIVMIDTAGRLQNRTELMDELEKVVRVVKKLEPTAPHAVLLVLDATVGQNALNQ 247

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           VE+F   AG TGL+MTK+DGTARGG L+ I   +++P++ +GVGEG  DL+PF A+DFS 
Sbjct: 248 VEVFARTAGVTGLVMTKLDGTARGGILVAIAQKYRLPIHLVGVGEGAEDLQPFSARDFSR 307

Query: 309 VITG 312
            I G
Sbjct: 308 AIAG 311


>gi|254292478|ref|YP_003058501.1| signal recognition particle-docking protein FtsY [Hirschia baltica
           ATCC 49814]
 gi|254041009|gb|ACT57804.1| signal recognition particle-docking protein FtsY [Hirschia baltica
           ATCC 49814]
          Length = 446

 Score =  292 bits (748), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 137/303 (45%), Positives = 206/303 (67%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  ++T+G   +S KL +GI+ + + ++LDD   EELEDLLI SD+G +VA ++ + +  
Sbjct: 139 FFARMTQGLQRSSSKLADGISSVFTKKKLDDDTLEELEDLLISSDLGASVAMRVCDNIRK 198

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            R+ K+V+ + +   +++ I  +L P  +  +      P V+L VGVNG GKTT IGK++
Sbjct: 199 DRFDKEVTDEEIKQALAQEITNVLKPREEILDLSDGPSPRVVLFVGVNGSGKTTTIGKIA 258

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            K+S  G  ++LAAGDTFR+AA++QLK+WA+R +A F+    G+D+A LAY+A KQA  +
Sbjct: 259 SKLSAQGANILLAAGDTFRAAAVEQLKVWAERANAGFLSRPDGADSAGLAYDAVKQATTE 318

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D+++IDTAGRL N + LM  + K++R +++++P APH V+ VLDAT GQNAL QVE F
Sbjct: 319 NRDLVLIDTAGRLQNRTELMDELAKVVRAIRKIEPTAPHEVILVLDATVGQNALSQVEAF 378

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              AG TGL+MTK+DGTA+GG L+ I   H +P++F+G+GE   DL PF A  F+  + G
Sbjct: 379 KHTAGVTGLVMTKLDGTAKGGVLVAIADKHALPIHFVGIGEKAEDLHPFSASAFANALVG 438

Query: 313 CLD 315
             D
Sbjct: 439 LSD 441


>gi|296114906|ref|ZP_06833554.1| signal recognition particle-docking protein FtsY [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978612|gb|EFG85342.1| signal recognition particle-docking protein FtsY [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 331

 Score =  292 bits (747), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 136/303 (44%), Positives = 208/303 (68%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +L +  +L  G + ++ KL  G++ + + R+LDD   E+LEDLLI +D+G  VA K+++ 
Sbjct: 2   ALGFFSRLKAGLSRSTQKLSGGLSAVFTRRKLDDQALEDLEDLLISADLGPNVAAKVIDS 61

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             + ++ K+V+ + V   ++E I K+L P++ PF  D +H+PHV+LVVGVNG GKTT IG
Sbjct: 62  FRSSKFGKEVTDEEVRTALAEEIAKILEPVAIPFEPDPAHKPHVVLVVGVNGTGKTTTIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+++   + G KVM+ AGDTFR+AA++QL++W +R  A  +     +DAA LA+EA K+ 
Sbjct: 122 KMARYYGEQGKKVMMVAGDTFRAAAVEQLQVWGERVGAPVIAGPPNADAAGLAFEALKKG 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D+L++DTAGRLHN   LM  + K+IRV+++ D  APHSV  VLDATTGQNA+ QV
Sbjct: 182 KAEGADLLLVDTAGRLHNKGALMEELAKIIRVMRKFDETAPHSVFLVLDATTGQNAMEQV 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  +   TGL++TK+DG+ARGG ++ +     +PV+ +GVGE   DL PF A+ F+  
Sbjct: 242 RVFKELVNVTGLVVTKLDGSARGGIVVALADAFGLPVHMVGVGEQAEDLRPFSAQAFAQG 301

Query: 310 ITG 312
           + G
Sbjct: 302 LVG 304


>gi|154251866|ref|YP_001412690.1| signal recognition particle-docking protein FtsY [Parvibaculum
           lavamentivorans DS-1]
 gi|154155816|gb|ABS63033.1| signal recognition particle-docking protein FtsY [Parvibaculum
           lavamentivorans DS-1]
          Length = 316

 Score =  288 bits (738), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 150/311 (48%), Positives = 209/311 (67%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
             + A +  S  +++ +G   ++  L  GIT I + ++LD    +ELE+LLI +D+G+  
Sbjct: 5   GSEAAEKKRSLFQRMKEGLTRSTKNLSGGITGIFTKKKLDRATLDELEELLIGADLGLDA 64

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A  I E +   RY K+VS + +   V++ I ++L P+ KP   D + +P VIL+ GVNG 
Sbjct: 65  AAAIAEAVGKDRYDKEVSPEEIRKIVADEIAEVLKPVEKPLEIDATKKPFVILMTGVNGA 124

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGK+   +   G  VMLAAGDTFR+AA++QLK+W  R  A    ++ G DAA LA
Sbjct: 125 GKTTTIGKIGATLKAEGKSVMLAAGDTFRAAAVEQLKVWGTRIGAPVCATKTGGDAAGLA 184

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           YEA  +A+ +  DVL+IDTAGRL N + LMA + K+IRV+++LDP  PH+ L VLDATTG
Sbjct: 185 YEALARAKEEGTDVLLIDTAGRLQNKADLMAELEKVIRVMRKLDPETPHATLLVLDATTG 244

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QVE+F  VAG TGL+MTK+DGTARGG L+ I     +PV+ +GVGEGI+DL+PF 
Sbjct: 245 QNALNQVEIFGQVAGITGLVMTKLDGTARGGILVAIARKFGLPVHMIGVGEGIDDLQPFS 304

Query: 303 AKDFSAVITGC 313
           A+ ++  ITG 
Sbjct: 305 AEAYARAITGA 315


>gi|144898020|emb|CAM74884.1| Signal recognition particle GTPase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 357

 Score =  285 bits (728), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 139/307 (45%), Positives = 200/307 (65%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A    SW+ +L  G   +S KL +G+ D+ + R+LDD   E+LEDLLI +D+GV  A +
Sbjct: 49  LAEAPQSWLSRLKSGLTKSSSKLTQGLGDLFTKRKLDDEALEDLEDLLITTDLGVGTAAR 108

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + + L   R+ +DV  + +   ++E + ++L P++KP       RPHV+LVVGVNG GKT
Sbjct: 109 VTKRLAKTRFGQDVGAEEIKQVLAEEVAQILAPVAKPLQPACVARPHVVLVVGVNGSGKT 168

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGK++K   D G +V LAAGDTFR+AA++QLK+W +RT       E G+DAA L ++A
Sbjct: 169 TTIGKMAKHFKDQGKQVALAAGDTFRAAAVEQLKVWGERTQCPVFSRETGADAAGLVFDA 228

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             ++  +  D+L +DTAGRL N + LM  + K++RV+K+ D  APH VL VLDAT GQNA
Sbjct: 229 MAESAKRGDDLLFVDTAGRLQNKADLMEELRKVVRVIKKQDETAPHDVLLVLDATVGQNA 288

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
             QVE+F  +   TGL++TK+DGTARGG L+ +     +PV+ +GVGE   DL PF A  
Sbjct: 289 HSQVEVFKDMVDVTGLVLTKLDGTARGGVLVALAEKFALPVHAIGVGEKAEDLRPFDANA 348

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 349 FARSLVG 355


>gi|83309312|ref|YP_419576.1| Signal recognition particle GTPase [Magnetospirillum magneticum
           AMB-1]
 gi|82944153|dbj|BAE49017.1| Signal recognition particle GTPase [Magnetospirillum magneticum
           AMB-1]
          Length = 332

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 147/301 (48%), Positives = 209/301 (69%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  +L  G A +S KL +G+ D+ + R+LDD   EELEDLLI +D+GVA+A ++ + L 
Sbjct: 30  SWFGRLKSGLAKSSSKLTQGLGDLFTKRKLDDEALEELEDLLITADLGVAMAARVTKHLA 89

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             R+ +DV+   +   ++E I ++L P++KP   D + +PHV+LVVGVNG GKTT IGK+
Sbjct: 90  KTRFGQDVTSDEIKATLAEEITRILTPVAKPLEIDSTRKPHVVLVVGVNGSGKTTTIGKM 149

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K   DAGL V LAAGDTFR+AA++QLK+W +RT    +  E G+DAA LAY+A +Q++A
Sbjct: 150 AKTYKDAGLNVTLAAGDTFRAAAVEQLKVWGERTHCPVIARETGADAAGLAYDAVEQSRA 209

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+L IDTAGRL N + LMA + K++R +K++D  APH VL VLDAT GQNA  QVE+
Sbjct: 210 RGDDLLFIDTAGRLQNKADLMAELAKLVRSIKKVDETAPHDVLLVLDATVGQNAHSQVEI 269

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   +GL++TK+DGTARGG L+ +     +PV+ +G+GE   DL PF A  F+  + 
Sbjct: 270 FKDMVAVSGLVLTKLDGTARGGVLVALAEKFGLPVHAIGIGEKAEDLRPFEADAFAKSLV 329

Query: 312 G 312
           G
Sbjct: 330 G 330


>gi|329113597|ref|ZP_08242377.1| Cell division protein FtsY-like protein [Acetobacter pomorum DM001]
 gi|326697119|gb|EGE48780.1| Cell division protein FtsY-like protein [Acetobacter pomorum DM001]
          Length = 309

 Score =  282 bits (722), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 145/306 (47%), Positives = 214/306 (69%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +L +  +L +G + ++ KL  GIT I + R+LDD   EELEDLLI +D+G AVA++I+E 
Sbjct: 2   ALGFFSRLKQGLSRSTQKLGGGITGIFTKRKLDDEALEELEDLLITADMGPAVAERIIES 61

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             + R+  +V+ + +   +++ I  +L P++KPF  D  H+PHV+L+VGVNGVGKTT IG
Sbjct: 62  FRSSRFGTEVTDEEIRTTLADEIAAILEPVAKPFEPDPEHKPHVVLMVGVNGVGKTTTIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+++  ++ G KVM+ AGDTFR+AA++QL+IW +RT    +    G+DAA LA+EA K+ 
Sbjct: 122 KMARFFTEEGKKVMMVAGDTFRAAAVEQLQIWGERTGCPVIAGPPGADAAGLAFEALKRG 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D+L +DTAGRLHN S LM  + K+IRV+++ D  APHSVL VLDATTGQNA+ QV
Sbjct: 182 KAEGADLLFVDTAGRLHNKSALMEELAKIIRVMRKFDETAPHSVLLVLDATTGQNAVEQV 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  +   TGL++TK+DG+ARGG ++ +     +PV+ +GVGE   DL PF A D++  
Sbjct: 242 RVFRELVNVTGLVVTKLDGSARGGIVVALADQFGLPVHAVGVGEQAEDLRPFSAVDYARG 301

Query: 310 ITGCLD 315
           + G  D
Sbjct: 302 LVGVTD 307


>gi|148261479|ref|YP_001235606.1| signal recognition particle-docking protein FtsY [Acidiphilium
           cryptum JF-5]
 gi|326404963|ref|YP_004285045.1| signal recognition particle-docking protein FtsY [Acidiphilium
           multivorum AIU301]
 gi|146403160|gb|ABQ31687.1| signal recognition particle-docking protein FtsY [Acidiphilium
           cryptum JF-5]
 gi|325051825|dbj|BAJ82163.1| signal recognition particle-docking protein FtsY [Acidiphilium
           multivorum AIU301]
          Length = 312

 Score =  281 bits (720), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 135/304 (44%), Positives = 202/304 (66%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +L ++ +L  G   ++ KL  GITD  + R+LDD   EELEDLLI +D+G A A +++  
Sbjct: 3   ALGFLSRLKSGLTRSTQKLAAGITDTFTKRKLDDAALEELEDLLITADLGPAAAARVIRA 62

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               R+ +DVS   +   ++E + K+L P+++P   D S  P VIL+VGVNG GKTT IG
Sbjct: 63  FRRTRFGQDVSAPEIRASLAEEVAKILAPVAQPLAIDRSKNPFVILMVGVNGTGKTTTIG 122

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++  ++AG + +L AGDTFR+AA++QL++W +RT A  +     +D A LA++A  +A
Sbjct: 123 KLAQSYAEAGARPLLVAGDTFRAAAVEQLQVWGERTGAPVMTGPANADPAGLAFDAIARA 182

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D+++IDTAGRLHN + LM  + K+IRV+++ D  APH+VL  LDATTGQNA+ QV
Sbjct: 183 RRDGHDIVLIDTAGRLHNKAALMEELRKIIRVIRKQDETAPHAVLLTLDATTGQNAIAQV 242

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F  +   TGLI+TK+DG+AR G ++ +  T  +P++ +GVGE   DL PF A +F+  
Sbjct: 243 ATFKEMVDLTGLIVTKLDGSARAGVVVALAETAALPIHAVGVGEQAADLRPFDATEFARA 302

Query: 310 ITGC 313
           +TG 
Sbjct: 303 LTGA 306


>gi|85710834|ref|ZP_01041895.1| Signal recognition particle GTPase [Idiomarina baltica OS145]
 gi|85695238|gb|EAQ33175.1| Signal recognition particle GTPase [Idiomarina baltica OS145]
          Length = 426

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 135/295 (45%), Positives = 196/295 (66%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W R LT+G   TS  +  G+  +   +++DD + EELE  L+ +D+GV    KI++ L  
Sbjct: 121 WAR-LTEGLKRTSGSIGSGLFGVFKGKKIDDDLFEELETQLLMADLGVKTTTKIIDNLTQ 179

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K +     LY++  E +  +L P+ KP   D S  P+VILV GVNGVGKTT IGKL
Sbjct: 180 QADRKQLKDAEALYELLQEQMEALLEPVDKPLAIDTSKTPYVILVTGVNGVGKTTTIGKL 239

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G  VMLAAGDTFR+AA++QL+IW +R     +  + GSD+A++ ++A + A+A
Sbjct: 240 AKQFKREGKSVMLAAGDTFRAAAVEQLQIWGERNEIPVIAQQTGSDSASVLFDAMQAAKA 299

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+ DP APH V+  LDA TGQNA+ Q ++
Sbjct: 300 RGIDVLIADTAGRLQNKSNLMEELKKIVRVMKKQDPEAPHEVMLTLDAGTGQNAISQAKL 359

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F    G +G++MTK+DGTA+GG +  +    KIP+ ++GVGE ++DL PFVA+DF
Sbjct: 360 FTEAVGVSGIVMTKLDGTAKGGVIFAVADEFKIPIRYIGVGEQLDDLRPFVARDF 414


>gi|307294714|ref|ZP_07574556.1| signal recognition particle-docking protein FtsY [Sphingobium
           chlorophenolicum L-1]
 gi|306879188|gb|EFN10406.1| signal recognition particle-docking protein FtsY [Sphingobium
           chlorophenolicum L-1]
          Length = 312

 Score =  278 bits (712), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 144/302 (47%), Positives = 196/302 (64%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  +L  G   TS KL E +T + +   LD+   +E+E+ LI SD+G A+A ++ + L 
Sbjct: 7   SWRDRLFGGLKRTSDKLGENLTGLFTKAALDEQTLDEIEEALIVSDLGPAMAARVRDRLS 66

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY ++++   +   ++E I K L P+++P   +   RP VILV+GVNG GKTT I KL
Sbjct: 67  EGRYNRELTEDYLREIIAEEIEKTLAPVARPLEIEAFPRPQVILVIGVNGSGKTTTIAKL 126

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +    +    VMLAAGDTFR+AAI QLK+WADR     V  + G DAA + ++A KQA A
Sbjct: 127 ANNFLEQDYGVMLAAGDTFRAAAIGQLKVWADRLGIPIVAGKEGGDAAGIVFDAVKQATA 186

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +DVLI+DTAGRL N + LM  + K+ RVL RL+P APH V+ VLDATTGQNAL Q+E+
Sbjct: 187 TGIDVLIVDTAGRLQNKTELMDELAKIRRVLGRLNPAAPHDVVLVLDATTGQNALSQIEV 246

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VA  TGL+MTK+DGTARGG L+     +++P++ +GVGE I DL PF   D +  I 
Sbjct: 247 FKEVAQVTGLVMTKLDGTARGGVLVAAAEKYRLPIHAIGVGEKIEDLRPFDPGDMARAIA 306

Query: 312 GC 313
           G 
Sbjct: 307 GT 308


>gi|16127909|ref|NP_422473.1| signal recognition particle-docking protein FtsY [Caulobacter
           crescentus CB15]
 gi|221236729|ref|YP_002519166.1| cell division protein FtsY [Caulobacter crescentus NA1000]
 gi|13425439|gb|AAK25641.1| signal recognition particle-docking protein FtsY [Caulobacter
           crescentus CB15]
 gi|220965902|gb|ACL97258.1| cell division protein ftsY [Caulobacter crescentus NA1000]
          Length = 313

 Score =  278 bits (712), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 136/303 (44%), Positives = 200/303 (66%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W ++LT G   +S  + E +T + + + LD    + LE++LI +D+G  +A +I E    
Sbjct: 11  WFQRLTSGLTRSSQAMTEQVTGVFTKKALDQEQLDALEEMLIEADLGPQIAARITEAFGK 70

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            R+ K  +   V   ++ELI   L      F+     RP+V+L +GVNG GKTT +GK++
Sbjct: 71  ARFGKSSTDDEVKEALAELIAAELADRQGDFDPLNGPRPYVVLFIGVNGSGKTTTLGKIA 130

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             +++ G +V++AAGDTFR+AA++QLK+WADR  ADF+    GSDAAALAYEA ++A+A+
Sbjct: 131 ADLTEKGARVLIAAGDTFRAAAVEQLKVWADRAGADFMSKPTGSDAAALAYEAVERAKAE 190

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV++IDTAGRL N   LM  + K+IRV+K++DP  PH  L VLDAT G+NAL Q ++F
Sbjct: 191 HYDVVLIDTAGRLQNKQGLMDELLKVIRVVKKVDPDYPHETLLVLDATVGRNALAQEKIF 250

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            +  G +G++MTK+DGTARGG L+P+      P+  +GVGEG+ DL+PF A+ FS  + G
Sbjct: 251 GSQVGVSGIVMTKLDGTARGGVLVPVARASDSPIKLIGVGEGVEDLQPFDARAFSRSLVG 310

Query: 313 CLD 315
             D
Sbjct: 311 LKD 313


>gi|330993224|ref|ZP_08317160.1| Cell division protein ftsY-like protein [Gluconacetobacter sp.
           SXCC-1]
 gi|329759626|gb|EGG76134.1| Cell division protein ftsY-like protein [Gluconacetobacter sp.
           SXCC-1]
          Length = 334

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 142/303 (46%), Positives = 212/303 (69%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +L +  +L  G + ++ KL  GIT + + R+LDD   EELEDLLI +D+G +VA+K+++ 
Sbjct: 2   ALGFFSRLKAGLSRSTQKLSGGITAVFTRRKLDDEALEELEDLLISADLGPSVAEKVIDS 61

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               ++ K+V+ + V   ++E I  +L P++ PF  D  H+PHV+LVVGVNG GKTT IG
Sbjct: 62  FRRAKFGKEVTDEEVRAALAEEIANILQPVAIPFEPDPKHKPHVVLVVGVNGTGKTTTIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+++   + G KVM+ AGDTFR+AA++QL++W +RT A  +     +DAA LA+EA K+A
Sbjct: 122 KMARFYGEQGKKVMMVAGDTFRAAAVEQLQVWGERTGAPVIAGRPNADAAGLAFEALKRA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A++ D+L++DTAGRLHN S LM  + K+IRV+++ D  APHSVL VLDATTGQNA+ QV
Sbjct: 182 TAEQADLLLVDTAGRLHNKSALMEELAKIIRVMRKFDETAPHSVLLVLDATTGQNAVEQV 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  +   TGL++TK+DG+ARGG ++ +     +PV+ +GVGE  +DL PF A+ F+  
Sbjct: 242 RVFKELVNVTGLVVTKLDGSARGGIVVALADAFGLPVHLVGVGEQADDLRPFSAEAFARG 301

Query: 310 ITG 312
           + G
Sbjct: 302 LVG 304


>gi|294012738|ref|YP_003546198.1| signal recognition particle GTPase [Sphingobium japonicum UT26S]
 gi|292676068|dbj|BAI97586.1| signal recognition particle GTPase [Sphingobium japonicum UT26S]
          Length = 310

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 144/302 (47%), Positives = 196/302 (64%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  +L  G   TS KL E +T + +   LD+   +E+E+ LI SD+G A+A ++ + L 
Sbjct: 5   SWRDRLFGGLKRTSDKLGENLTGLFTKAALDEQTLDEIEEALIVSDLGPAMAARVRDRLS 64

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY ++++   +   ++E I K L P+++P   +   RP VILV+GVNG GKTT I KL
Sbjct: 65  EGRYNRELTEDYLREIIAEEIEKTLAPVARPLEIEAFPRPQVILVIGVNGSGKTTTIAKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +    +    VMLAAGDTFR+AAI QLK+WADR     V  + G DAA + ++A KQA A
Sbjct: 125 ANLFLEQDYGVMLAAGDTFRAAAIGQLKVWADRLGIPIVAGKEGGDAAGIVFDAVKQATA 184

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +DVLI+DTAGRL N + LM  + K+ RVL RL+P APH V+ VLDATTGQNAL Q+E+
Sbjct: 185 TGIDVLIVDTAGRLQNKTELMDELAKIRRVLGRLNPAAPHDVVLVLDATTGQNALSQIEV 244

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VA  TGL+MTK+DGTARGG L+     +++P++ +GVGE I DL PF   D +  I 
Sbjct: 245 FKEVAQVTGLVMTKLDGTARGGVLVAAAEKYRLPIHAIGVGEKIEDLRPFDPGDMARAIA 304

Query: 312 GC 313
           G 
Sbjct: 305 GT 306


>gi|7230353|gb|AAF42961.1|AF090335_1 FtsY [Caulobacter vibrioides]
          Length = 313

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 136/303 (44%), Positives = 199/303 (65%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W ++LT G   +S  + E +T + + + LD    + LE++LI +D+G  +A +I E    
Sbjct: 11  WFQRLTSGLTRSSQAMTEQVTGVFTKKALDQEQLDALEEMLIEADLGPQIAARITEAFGK 70

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            R+ K  +   V   ++ELI   L      F+     RP+V+L +GVNG GKTT +GK++
Sbjct: 71  ARFGKSSTDDEVKEALAELIAAELADRQGDFDPLNGPRPYVVLFIGVNGSGKTTTLGKIA 130

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             +++ G +V++AAGDTFR+AA++QLK+WADR  ADF+    GSDAAALAYEA ++A+A+
Sbjct: 131 ADLTEKGARVLIAAGDTFRAAAVEQLKVWADRAGADFMSKPTGSDAAALAYEAVERAKAE 190

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV++IDTAGRL N   LM  + K IRV+K++DP  PH  L VLDAT G+NAL Q ++F
Sbjct: 191 HYDVVLIDTAGRLQNKQGLMDELLKGIRVVKKVDPDYPHETLLVLDATVGRNALAQEKIF 250

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            +  G +G++MTK+DGTARGG L+P+      P+  +GVGEG+ DL+PF A+ FS  + G
Sbjct: 251 GSQVGVSGIVMTKLDGTARGGVLVPVARASDSPIKLIGVGEGVEDLQPFDARAFSRSLVG 310

Query: 313 CLD 315
             D
Sbjct: 311 LKD 313


>gi|304320389|ref|YP_003854032.1| FtsY, signal recognition particle-docking protein [Parvularcula
           bermudensis HTCC2503]
 gi|303299291|gb|ADM08890.1| FtsY, signal recognition particle-docking protein [Parvularcula
           bermudensis HTCC2503]
          Length = 459

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 141/289 (48%), Positives = 191/289 (66%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L  G A TS KL  GI  I + +RLDD   EELEDLLI +DIGV    +I+ +L  
Sbjct: 157 FFGRLRSGLAKTSAKLSGGIGTIFTKKRLDDDTLEELEDLLIMADIGVPTTTRIITQLAK 216

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            ++ ++VS + +   +S  I   L PL      D +H PHVIL+ GVNG GKTT IGKL+
Sbjct: 217 DKFDQEVSGEDIRAILSREIETTLAPLEAQLAPDGTHGPHVILMTGVNGAGKTTTIGKLA 276

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           ++ +  G  V+LAA DTFR+AAI+QL +W +R     +  E G+D AALAY+A  +AQA+
Sbjct: 277 QQFTAEGKSVLLAACDTFRAAAIEQLTVWGERVGVPVISREQGADPAALAYDAVAKAQAE 336

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +D+++IDTAGRL N   LM  +GK++RV+K+LD  APH  + VLDAT GQNAL Q E F
Sbjct: 337 GIDIVLIDTAGRLQNRRELMDELGKIVRVVKKLDDSAPHDAVLVLDATVGQNALSQTEAF 396

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
              A  TGLIMTK+DGTARGG L+ +     +P++ +GVGE + DL+PF
Sbjct: 397 LETAKITGLIMTKLDGTARGGVLVALGDKFGLPIHAIGVGETVEDLQPF 445


>gi|295691524|ref|YP_003595217.1| signal recognition particle-docking protein FtsY [Caulobacter
           segnis ATCC 21756]
 gi|295433427|gb|ADG12599.1| signal recognition particle-docking protein FtsY [Caulobacter
           segnis ATCC 21756]
          Length = 313

 Score =  275 bits (704), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 135/303 (44%), Positives = 198/303 (65%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W ++LT G   TS  + E +T + + + LD    + LE++LI +D+G  +A +I +    
Sbjct: 11  WFQRLTSGLTRTSQAMTEQVTGVFTKKPLDQEQLDALEEMLIEADLGPEIAARITDAFGK 70

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            R+ K  +   V   ++ELI   L      F+     RP+V+L +GVNG GKTT +GK++
Sbjct: 71  ARFGKSSTDDEVKEALAELIAAELADRQGDFDPLSGPRPYVVLFIGVNGSGKTTTLGKIA 130

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             +++ G +V++AAGDTFR+AA++QLK+WADR  ADF+    GSDAA LAYEA ++A+A+
Sbjct: 131 ADLTEKGARVLIAAGDTFRAAAVEQLKVWADRAGADFMSKPTGSDAAGLAYEAVERAKAE 190

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV++IDTAGRL N   LM  + K+IRV+K++DP  PH  L VLDAT G+NAL Q ++F
Sbjct: 191 HYDVVLIDTAGRLQNKQGLMDELLKVIRVVKKVDPDYPHETLLVLDATVGRNALAQEKIF 250

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
               G +G++MTK+DGTARGG L+P+      P+  +GVGEG+ DL+PF A+ FS  + G
Sbjct: 251 GNQVGVSGIVMTKLDGTARGGVLVPVARASDSPIKLIGVGEGVEDLQPFDARAFSRSLVG 310

Query: 313 CLD 315
             D
Sbjct: 311 LKD 313


>gi|114799634|ref|YP_762197.1| signal recognition particle-docking protein FtsY [Hyphomonas
           neptunium ATCC 15444]
 gi|114739808|gb|ABI77933.1| signal recognition particle-docking protein FtsY [Hyphomonas
           neptunium ATCC 15444]
          Length = 414

 Score =  275 bits (703), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 135/298 (45%), Positives = 204/298 (68%), Gaps = 1/298 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +G A ++ KL EG+   +  R+LDD   EEL+DLLI SD+G  VA ++ + +   R+
Sbjct: 115 RLGEGLARSTAKLTEGLA-ALGRRKLDDATLEELQDLLITSDMGTRVAMRVTKGIAKGRF 173

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            K++S + +   ++E I ++L P  +  ++    RP ++L VGVNG GKTT IGK++ K+
Sbjct: 174 DKEISGEEIRLALAEEIEEILKPREQVVDFSDGPRPRIVLFVGVNGSGKTTTIGKIASKL 233

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
            + G K +L AGDTFR+AA++QLK+W +R     +    G+DAA L Y A ++A+A+ +D
Sbjct: 234 QEQGAKALLVAGDTFRAAAVEQLKVWGERAGIPVMAGAHGADAAGLVYGAVERAKAEDLD 293

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++++DTAGRL N + LM+ +GK++RV+K++DP APH V+ VLDAT GQNAL QVE F   
Sbjct: 294 LVLVDTAGRLQNKAELMSELGKIVRVMKKIDPDAPHDVILVLDATVGQNALSQVEAFRHT 353

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           AG TGL+MTK+DGTA+GG L+ I   H +P++F+G+GE   DL PF A+ F+  + G 
Sbjct: 354 AGVTGLVMTKLDGTAKGGVLVAIAEAHDLPIHFIGIGERAEDLRPFSAEAFAKALVGI 411


>gi|296532246|ref|ZP_06894991.1| cell division protein FtsY [Roseomonas cervicalis ATCC 49957]
 gi|296267431|gb|EFH13311.1| cell division protein FtsY [Roseomonas cervicalis ATCC 49957]
          Length = 328

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/301 (46%), Positives = 207/301 (68%), Gaps = 1/301 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L  G + ++ +L +G+T + + R+LD+   EELE+ LI +D+GVA +Q+IVE    
Sbjct: 26  FFARLKAGLSRSTARLTDGLTGLFTRRKLDEAALEELEEALITADLGVAASQRIVERFRK 85

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            R+ K+VS   V   ++E I  +L P++KP   D + RPHV+LVVGVNG GKTT I KL 
Sbjct: 86  TRFGKEVSDTEVKEALAEEIAAILAPVAKPLEIDAAKRPHVVLVVGVNGTGKTTTIAKLG 145

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQA 191
           ++  + G KV   AGDTFR+AA++QL+IW +RT A     ++ G+DAA LA++A K AQA
Sbjct: 146 QQFGEQGKKVAFVAGDTFRAAAVEQLQIWGNRTGAQVHAPAKQGADAAGLAFDALKAAQA 205

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              ++L++DTAGRLHN   LM  + K++RV++R+DP APHSVL VLDATTGQNA +Q ++
Sbjct: 206 DGTEILLVDTAGRLHNKGALMEELRKVVRVMQRVDPTAPHSVLLVLDATTGQNATQQCKV 265

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGL++TK+DG+A+GG ++ +     +PV+ +GVGE   DL PF A+D++  + 
Sbjct: 266 FAEMVNVTGLVVTKLDGSAKGGIVVALAQEFGLPVHAVGVGEKAADLRPFSARDYARSLL 325

Query: 312 G 312
           G
Sbjct: 326 G 326


>gi|85373608|ref|YP_457670.1| signal recognition particle GTPase [Erythrobacter litoralis
           HTCC2594]
 gi|84786691|gb|ABC62873.1| signal recognition particle GTPase [Erythrobacter litoralis
           HTCC2594]
          Length = 304

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 142/303 (46%), Positives = 193/303 (63%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +SW  +L  GF  TS +L E +T  +S+  LDD   EE+ED LI SD+G A A +I E+L
Sbjct: 1   MSWTERLFGGFKKTSDRLSENLTTAVSTATLDDATLEEVEDALIMSDLGPAAASRIREKL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             KR+   +S + +   V++ I ++L P++KP       RP VILV+GVNG GKTT I K
Sbjct: 61  KEKRFGLQISERELKKAVADEIAEILRPVAKPLEITAFPRPQVILVIGVNGSGKTTTIAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  + +   +VMLAAGDTFR+AAI+QL  WADR     V    G D A++ ++  K   
Sbjct: 121 LAHWLVEEDYEVMLAAGDTFRAAAIEQLATWADRVGVPIVKGPQGGDPASIVFDGVKAGT 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D L++DTAGRL N   LM  + K+ +VL RL+P APH V+ VLDAT GQNAL Q++
Sbjct: 181 DRGTDALVVDTAGRLQNKRELMDELAKIRKVLGRLNPEAPHDVILVLDATNGQNALSQID 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG TGLIMTK+DGTARGG L+     + +P++ +GVGE I+DL PF     + VI
Sbjct: 241 VFKEVAGVTGLIMTKLDGTARGGVLVAAAEQYGLPIHAIGVGETIDDLRPFDPDLVAKVI 300

Query: 311 TGC 313
            G 
Sbjct: 301 AGI 303


>gi|56459337|ref|YP_154618.1| Signal recognition particle GTPase [Idiomarina loihiensis L2TR]
 gi|56178347|gb|AAV81069.1| Signal recognition particle GTPase [Idiomarina loihiensis L2TR]
          Length = 449

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 134/299 (44%), Positives = 196/299 (65%), Gaps = 2/299 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W R LT+G   TS  +  G+  +   +++DD + EELE  L+ +D+GVA   KI++ L  
Sbjct: 138 WAR-LTQGLRRTSGSIGSGLIGVFRGKKIDDDLFEELETQLLMADLGVATTTKIIDNLTK 196

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K +     LY++  E + ++L P+ K      S  P+VIL+ GVNGVGKTT IGKL
Sbjct: 197 QADRKQLKDAEALYELLQEQLAEILKPVDKRLEIPESDSPYVILMTGVNGVGKTTTIGKL 256

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+A
Sbjct: 257 AKQFKAEGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVLYDALQAAKA 316

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N + LM  + K++RV+K+LDP APH V+  LDA TGQNA+ Q ++
Sbjct: 317 RDVDVLIADTAGRLQNKANLMEELKKLVRVMKKLDPEAPHEVMLTLDAGTGQNAISQAKL 376

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           F    G +G++MTK+DGTA+GG +  +     IP+ ++GVGE + DL PFVAKDF A +
Sbjct: 377 FTEAVGVSGIVMTKLDGTAKGGVIFAVADQFAIPIRYIGVGESLEDLRPFVAKDFIAAL 435


>gi|148555838|ref|YP_001263420.1| signal recognition particle-docking protein FtsY [Sphingomonas
           wittichii RW1]
 gi|148501028|gb|ABQ69282.1| signal recognition particle-docking protein FtsY [Sphingomonas
           wittichii RW1]
          Length = 311

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 144/306 (47%), Positives = 193/306 (63%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W  KL  GF  TS +L E +T +     LD+   +E+E+ LI SD+G A A +I   L  
Sbjct: 6   WHEKLFGGFRKTSDRLGENLTGLFGKAALDEATLDEIEEALIASDLGPATAGRIRARLKG 65

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           + + K +  + +   V++ I K+L P++KP   +   RP VILV+GVNG GKTT I KL+
Sbjct: 66  EMFEKGLDERALREIVAQEIEKVLAPVAKPLEIEAFPRPQVILVIGVNGSGKTTTIAKLA 125

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             + +    VML AGDTFR+AAI QLK+WADR     +  + G DAA L +E  KQ   K
Sbjct: 126 HMLQEQDYAVMLVAGDTFRAAAIGQLKVWADRIGVPIISGKEGGDAAGLVFEGVKQGTEK 185

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +DVLI+DTAGRL N + LM  + K+ RVL RL+  APH VL VLDATTGQNAL Q+E+F
Sbjct: 186 GIDVLIVDTAGRLQNKAGLMDELAKIRRVLGRLNTAAPHDVLLVLDATTGQNALSQIEIF 245

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              AG TGLIMTK+DGTARGG L+       +PV+ +G+GEG++DL+PF   + +  I G
Sbjct: 246 KETAGVTGLIMTKLDGTARGGVLVAAAERTGMPVHAIGLGEGVDDLKPFDPAEVARAIAG 305

Query: 313 CLDYGE 318
               G+
Sbjct: 306 LERIGK 311


>gi|94495524|ref|ZP_01302104.1| signal recognition particle-docking protein FtsY [Sphingomonas sp.
           SKA58]
 gi|94424912|gb|EAT09933.1| signal recognition particle-docking protein FtsY [Sphingomonas sp.
           SKA58]
          Length = 310

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 139/302 (46%), Positives = 195/302 (64%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +W  +L  G   TS +L + +T + +   LDD   +E+E+ LI SD+G A+A ++ + L 
Sbjct: 5   NWRDRLFGGLKRTSDRLGDNLTGLFTKAALDDQTLDEIEEALIVSDLGPAMAARVRDRLA 64

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             R+ K+++ + +   ++E I K L P+++P   +   RP VILV+GVNG GKTT I KL
Sbjct: 65  EGRFNKELTEEYLREIIAEEIEKTLAPVARPLEIEAFPRPQVILVIGVNGSGKTTTIAKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +    +    VMLAAGDTFR+AAI QLK+WA+R     +  + G DAA + ++A KQA A
Sbjct: 125 AHNFLEQDYGVMLAAGDTFRAAAIGQLKVWAERLGIPIIAGKEGGDAAGIVFDAVKQATA 184

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +DVLI+DTAGRL N + LM  + K+ RVL RL+P APH V+ VLDATTGQNAL Q+E+
Sbjct: 185 TGIDVLIVDTAGRLQNKTELMDELAKVRRVLGRLNPAAPHDVVLVLDATTGQNALNQIEV 244

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A  TGL+MTK+DGTARGG L+      ++P++ +GVGE I DL PF   D +  I 
Sbjct: 245 FKETAQVTGLVMTKLDGTARGGVLVAAAEKFRLPIHAIGVGEKIEDLRPFDPGDMAKAIA 304

Query: 312 GC 313
           G 
Sbjct: 305 GT 306


>gi|254441406|ref|ZP_05054899.1| signal recognition particle-docking protein FtsY, putative
           [Octadecabacter antarcticus 307]
 gi|198251484|gb|EDY75799.1| signal recognition particle-docking protein FtsY, putative
           [Octadecabacter antarcticus 307]
          Length = 550

 Score =  271 bits (694), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 133/285 (46%), Positives = 193/285 (67%), Gaps = 1/285 (0%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  G    +  R LDD + E LE+LLI +D+GV  A ++   +   R+ K +S Q +   
Sbjct: 264 LGRGEKKTVVRRELDDDMLERLEELLISADMGVDTALRVTSNMAEGRFGKRLSTQEIKEL 323

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           ++  I +++ P+++P    +  +P V+LVVGVNG GKTT IGKL+ +   AG KV++AAG
Sbjct: 324 LAAEITRVMEPVARPLPL-YPTKPQVVLVVGVNGSGKTTTIGKLASQFQAAGKKVVIAAG 382

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QL++W DR     + +  GSD A+LAY+A +QA     D+L+IDTAGRL N
Sbjct: 383 DTFRAAAVEQLQVWGDRAGVPVLTAPQGSDPASLAYDAMEQAARDGADLLMIDTAGRLQN 442

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + K++RV+++ DP APH+ L VLDATTGQNAL QV+ F  +A  TGLIMTK+D
Sbjct: 443 RADLMEELQKIVRVIRKKDPDAPHNTLLVLDATTGQNALSQVKTFQELADVTGLIMTKLD 502

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           GTA+GG L+ +     +P++ +GVGE I+DL PF  +DF+A +TG
Sbjct: 503 GTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEDFAAALTG 547


>gi|114763008|ref|ZP_01442438.1| Signal recognition particle-docking protein FtsY [Pelagibaca
           bermudensis HTCC2601]
 gi|114544332|gb|EAU47340.1| Signal recognition particle-docking protein FtsY [Roseovarius sp.
           HTCC2601]
          Length = 462

 Score =  271 bits (693), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 133/284 (46%), Positives = 195/284 (68%), Gaps = 1/284 (0%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
           +E  +  +  R LDD + E LE+LLI SD+GV  A ++   +   RY K VS Q +   +
Sbjct: 176 RETPSAPVVRRVLDDDMLESLEELLIASDMGVDTALRVSANIAEGRYGKRVSTQEIKAAL 235

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +  + +++ P++KP    +  +P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGD
Sbjct: 236 AAEVARVMDPVAKPLPL-YPKKPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGD 294

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+AA++QL++W DR     + +  GSD A+LA++A  +AQA+  D+L+IDTAGRL N 
Sbjct: 295 TFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNR 354

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  + K++RV+++ DP APH+ L VLDATTGQNAL QVE+F  VA  +GL+MTK+DG
Sbjct: 355 QDLMEELAKIVRVIRKKDPDAPHNTLLVLDATTGQNALTQVEIFRQVADVSGLVMTKLDG 414

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           TA+GG L+ +     +P++ +GVGE I+DL PF  ++F+A +TG
Sbjct: 415 TAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTG 458


>gi|260433210|ref|ZP_05787181.1| signal recognition particle-docking protein FtsY [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417038|gb|EEX10297.1| signal recognition particle-docking protein FtsY [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 383

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 131/275 (47%), Positives = 193/275 (70%), Gaps = 1/275 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LE+LLI SD+GV  A ++   +   RY + +S Q +   +++ I +++ P
Sbjct: 107 RTLDDDMLEQLEELLIASDMGVDTALRVTANMAEGRYGRKLSTQEIKQLLAQEIARVMEP 166

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++KP    +  RP V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA++QL
Sbjct: 167 VAKPMPL-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQL 225

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD A+LA++A  +AQA   D+L+IDTAGRL N + LM  + K+
Sbjct: 226 QVWGDRAGVPVLTAPEGSDPASLAFDALTKAQADGADLLMIDTAGRLQNRADLMEELAKI 285

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV++++D  APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 286 VRVIRKIDETAPHNTLLVLDATTGQNALSQVETFRKLADVSGLVMTKLDGTAKGGVLVAL 345

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 346 ADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 380


>gi|288957724|ref|YP_003448065.1| signal recognition particle receptor [Azospirillum sp. B510]
 gi|288910032|dbj|BAI71521.1| signal recognition particle receptor [Azospirillum sp. B510]
          Length = 402

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 151/300 (50%), Positives = 208/300 (69%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W  KL +G + +S KL +GIT I + R+LDD   EELE+LLI +D+G A A K+  EL  
Sbjct: 99  WFAKLKEGLSKSSSKLTDGITSIFTKRKLDDDALEELEELLITADLGPATAAKVTAELAR 158

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            R+ K+VS   V   ++  + K++ P+++P   D + +PHV+LVVGVNG GKTT IGKL+
Sbjct: 159 TRFGKEVSPDEVKATLAAEVSKIVSPVARPLVLDPALKPHVVLVVGVNGTGKTTTIGKLA 218

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           ++    G  VMLAAGDTFR+AA+ QLKIW +RT    V  + G+DAA LAY+A ++A+A+
Sbjct: 219 RQFKAEGRSVMLAAGDTFRAAAVSQLKIWGERTGCPVVARDTGADAAGLAYDALERARAE 278

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            VDVL+IDTAGRL N + LM  + K++RV+K+LD  APH+ L  LDATTGQNA  QVE+F
Sbjct: 279 GVDVLLIDTAGRLQNKTGLMEELRKIVRVIKKLDETAPHTTLLTLDATTGQNAHSQVEIF 338

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             +    GLI+TK+DG+ARGG L+ +    +IPV+ +GVGEG+ DL PF A  F+  + G
Sbjct: 339 RDMVNVNGLILTKLDGSARGGVLVSLAEKFRIPVHAIGVGEGVYDLRPFDADAFAKSLMG 398


>gi|254450341|ref|ZP_05063778.1| signal recognition particle-docking protein FtsY [Octadecabacter
           antarcticus 238]
 gi|198264747|gb|EDY89017.1| signal recognition particle-docking protein FtsY [Octadecabacter
           antarcticus 238]
          Length = 409

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 132/285 (46%), Positives = 193/285 (67%), Gaps = 1/285 (0%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  G    +  R LDD + E LE+LLI +D+GV  A ++   +   R+ K +S Q +   
Sbjct: 123 LGRGDAKTVVRRELDDDMLERLEELLISADMGVDTALRVTSNMAEGRFGKRLSTQEIKEL 182

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           ++  I +++ P+++P    +  +P V+LVVGVNG GKTT IGKL+ +   AG KV++AAG
Sbjct: 183 LAAEITRIMEPVARPMPL-YPTKPQVVLVVGVNGSGKTTTIGKLASQFQAAGKKVVIAAG 241

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QL++W DR     + +  GSD A+LA++A +QA     D+L+IDTAGRL N
Sbjct: 242 DTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMEQAACDGADLLMIDTAGRLQN 301

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + K++RV+++ DP APH+ L VLDATTGQNAL QV+ F  +A  TGLIMTK+D
Sbjct: 302 RADLMEELQKIVRVIRKKDPDAPHNTLLVLDATTGQNALSQVKTFQELADVTGLIMTKLD 361

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           GTA+GG L+ +     +P++ +GVGE I+DL PF  +DF+A +TG
Sbjct: 362 GTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEDFAAALTG 406


>gi|114328162|ref|YP_745319.1| cell division protein ftsY [Granulibacter bethesdensis CGDNIH1]
 gi|114316336|gb|ABI62396.1| cell division protein ftsY [Granulibacter bethesdensis CGDNIH1]
          Length = 306

 Score =  268 bits (686), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 139/305 (45%), Positives = 209/305 (68%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +L +  KL +G A ++ KL   +T +IS RRLDD   EELE+ LI +D+G +VA +++E 
Sbjct: 2   ALGFFSKLKEGLARSTQKLTTNLTSVISHRRLDDAALEELEEALIAADLGTSVAARVIEA 61

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               R+ ++V+ + +   ++E I ++L P++ P   D + +PHVIL+VGVNG GKTT IG
Sbjct: 62  FRRTRFGREVTEEEIKTALAEEIARILHPVAIPLEPDLTRKPHVILMVGVNGTGKTTTIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++   D GL+ +L AGDTFR+AA++QL++W +R  A  +    G+DAA LA++A  +A
Sbjct: 122 KLAQSWKDQGLRSILVAGDTFRAAAVEQLQVWGERVGAPVISGPAGADAAGLAFDALAKA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA++ D+L+IDTAGRLHN   LM  + K+IRV+++ D   PHS+L VLDATTGQNA+ QV
Sbjct: 182 QAEQADILLIDTAGRLHNKGALMEELSKIIRVMRKHDETVPHSILLVLDATTGQNAVEQV 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  +   TGLI+TK+DG+ARGG ++ +     +PV+ +GVGE   DL PF A +F+  
Sbjct: 242 RVFKDMVNITGLIVTKLDGSARGGIVVALAEDFGLPVHAVGVGEKAGDLRPFDAMEFARG 301

Query: 310 ITGCL 314
           + G +
Sbjct: 302 LVGAV 306


>gi|332185721|ref|ZP_08387468.1| signal recognition particle-docking protein FtsY [Sphingomonas sp.
           S17]
 gi|332014079|gb|EGI56137.1| signal recognition particle-docking protein FtsY [Sphingomonas sp.
           S17]
          Length = 311

 Score =  268 bits (686), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 147/306 (48%), Positives = 190/306 (62%), Gaps = 1/306 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           S S SW  KL  GF  TS +L   +  +  + RLD+   +E+E+ LI SD+G   A  I 
Sbjct: 2   SSSPSWHEKLLGGFRRTSDRLVGNLAGL-GTARLDEDTLDEIEEALIASDLGPETAGHIR 60

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             L    + +++    +   V+E + K L  ++ P   D   RP VILV+GVNG GKTT 
Sbjct: 61  TRLSEGSFERNMEDLGIRLVVAEEVEKALAKVATPLEIDAFPRPQVILVIGVNGSGKTTT 120

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL+    +    VMLAAGDTFR+AAI QL  WA+R     V  + G DAA + YEA K
Sbjct: 121 IAKLAHLFMEQDYGVMLAAGDTFRAAAIGQLATWAERVGVPIVSGKEGGDAAGIVYEAVK 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA A  VDVLI+DTAGRL N   LM  + K+ RVL RL+P APH +L VLDATTGQNAL 
Sbjct: 181 QATATGVDVLIVDTAGRLQNKRELMDELSKIRRVLGRLNPEAPHDILLVLDATTGQNALN 240

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+E+F  VAG TGL+MTK+DGTARGG L+     + +P++ +GVGEG+ DL PF A + S
Sbjct: 241 QIEVFKDVAGVTGLVMTKLDGTARGGVLVAAAEKYGLPIHAIGVGEGMTDLRPFDANEVS 300

Query: 308 AVITGC 313
            +I G 
Sbjct: 301 RIIAGI 306


>gi|87199421|ref|YP_496678.1| signal recognition particle-docking protein FtsY [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135102|gb|ABD25844.1| signal recognition particle-docking protein FtsY [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 308

 Score =  268 bits (685), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 145/303 (47%), Positives = 188/303 (62%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  ++  GF  TS +L E +  I+ S RL +   ++LED LI SD+G   A +I E L 
Sbjct: 5   SWSDRILGGFRKTSERLAENLGGIVGSSRLTEAQLDDLEDALILSDLGPRAAARIRERLK 64

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             R+   V  Q +   V+E I  +L P++KP       RP VILV+GVNG GKTT I KL
Sbjct: 65  GARFENGVDEQGLKEAVAEEIAAILRPVAKPLEIVAFPRPQVILVIGVNGSGKTTTIAKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +    +    VMLAAGDTFR+AAI QLK+WADR     V    G D A++ ++A K A  
Sbjct: 125 AHLFQEQDYGVMLAAGDTFRAAAIGQLKVWADRLGVPIVTGPEGGDPASIVFDAVKAATD 184

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +D LI+DTAGRL N   LM  + K+ RVL RL+P APH V+ VLDAT GQNAL+Q+E+
Sbjct: 185 TGIDTLIVDTAGRLQNKRELMDELAKVRRVLGRLNPAAPHDVVLVLDATNGQNALQQIEI 244

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG TGLIMTK+DGTARGG L+     + +P++ +GVGE I+DL PF     + VI 
Sbjct: 245 FKEVAGVTGLIMTKLDGTARGGVLVAAAEQYGLPIHAIGVGEKIDDLRPFDPDLVAKVIA 304

Query: 312 GCL 314
           G  
Sbjct: 305 GVF 307


>gi|89053705|ref|YP_509156.1| signal recognition particle-docking protein FtsY [Jannaschia sp.
           CCS1]
 gi|88863254|gb|ABD54131.1| signal recognition particle-docking protein FtsY [Jannaschia sp.
           CCS1]
          Length = 381

 Score =  268 bits (685), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 131/275 (47%), Positives = 192/275 (69%), Gaps = 1/275 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LE+LLI SD+GV +A ++   +   RY K +S   +   ++  I +++ P
Sbjct: 105 RALDDDMLEQLEELLIASDMGVDIALRVTANMAEGRYGKMLSATEIKELLASEITRVMEP 164

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    +   P V+LVVGVNG GKTT IGKLS +   AG KV++AAGDTFR+AA++QL
Sbjct: 165 VARPLPI-YPKTPQVVLVVGVNGSGKTTTIGKLSSQFRAAGKKVVIAAGDTFRAAAVEQL 223

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD AALAY+A  +A+A   D+L+IDTAGRL N + LM  + K+
Sbjct: 224 QVWGDRAGVPVLTAPEGSDPAALAYDAMVKAEADGADLLMIDTAGRLQNRADLMEELAKI 283

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+ L VLDATTGQNALRQVE+F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 284 VRVIRKKDPDAPHNTLLVLDATTGQNALRQVELFGQMADVSGLVMTKLDGTAKGGVLVAL 343

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +P++ +GVGE I+DL+PF  ++F+  + G 
Sbjct: 344 ADKFGLPIHAIGVGEQIDDLQPFDPEEFADALVGL 378


>gi|162148087|ref|YP_001602548.1| cell division protein ftsY [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542701|ref|YP_002274930.1| signal recognition particle-docking protein FtsY [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786664|emb|CAP56247.1| Cell division protein ftsY [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530378|gb|ACI50315.1| signal recognition particle-docking protein FtsY [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 326

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/303 (47%), Positives = 204/303 (67%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +L +  +L  G + ++ KL  GI  + + R+LDD   EELEDLLI +D+G AVA +I+E 
Sbjct: 2   ALGFFSRLKAGLSRSTQKLGGGIAAVFTRRKLDDEALEELEDLLISADLGPAVAARIIES 61

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               R+  +V+   V   +S  I ++L P++ PF  D   +PHV+LVVGVNG GKTT IG
Sbjct: 62  FRHSRFGAEVTDDEVRDALSAEIAQVLEPVAVPFVPDPQRKPHVVLVVGVNGTGKTTTIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+++   + GLKVM+ AGDTFR+AA++QL++W  R  A  +     +DAA LA+EA K+ 
Sbjct: 122 KMARYYGEQGLKVMMVAGDTFRAAAVEQLQVWGQRVGAPVIAGPPNADAAGLAFEALKRG 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA+  D+L+IDTAGRLHN   LM  + K+IRV+++ D  APHSVL VLDATTGQNA+ QV
Sbjct: 182 QAEGCDLLLIDTAGRLHNKGALMEELAKIIRVMRKFDESAPHSVLLVLDATTGQNAIEQV 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  +   TGL++TK+DG+ARGG ++ +  T  +PV+ +GVGE   DL PF A+ F+  
Sbjct: 242 RVFKELVNVTGLVVTKLDGSARGGIVVALADTFGLPVHAVGVGEQAEDLRPFSAEAFARG 301

Query: 310 ITG 312
           + G
Sbjct: 302 LVG 304


>gi|71278165|ref|YP_266925.1| signal recognition particle-docking protein FtsY [Colwellia
           psychrerythraea 34H]
 gi|71143905|gb|AAZ24378.1| signal recognition particle-docking protein FtsY [Colwellia
           psychrerythraea 34H]
          Length = 481

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 133/301 (44%), Positives = 196/301 (65%), Gaps = 1/301 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A   L +  +L +G + T   L  G+ D+   +++DD + EELE  L+ +D+GV    KI
Sbjct: 174 AESKLGFFARLKQGLSKTRQNLGGGLIDLFRGKQIDDDLFEELETHLLLADVGVETTMKI 233

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E L      K +     LYD+ ++ + K++  +S+P        P VIL+VGVNGVGKT
Sbjct: 234 IESLTQSANRKQLKDASALYDLLKIELKKVIEDVSQPLVIPEDDGPFVILMVGVNGVGKT 293

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ ++A
Sbjct: 294 TTIGKLAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSASVIFDA 353

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+KVD++I DTAGRL N + LM  + K++RV+K+LD +APH V+  LDA TGQNA
Sbjct: 354 ISAAKARKVDIIIADTAGRLQNKAHLMEELKKVVRVMKKLDVNAPHEVMLTLDAGTGQNA 413

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q ++F    G TGL +TK+DGTA+GG +  +   H IP+ +LGVGEGI+DL PF + D
Sbjct: 414 LSQTKLFDEAVGLTGLTITKLDGTAKGGVIFAVADKHSIPIRYLGVGEGIDDLRPFNSDD 473

Query: 306 F 306
           F
Sbjct: 474 F 474


>gi|56551966|ref|YP_162805.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761948|ref|ZP_04760033.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260752487|ref|YP_003225380.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|56543540|gb|AAV89694.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241373628|gb|EER63200.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258551850|gb|ACV74796.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 310

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 138/305 (45%), Positives = 194/305 (63%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE   W +K+  G   TS +L E ++ I     LDD   +E+E+ LI  D+G   A +I 
Sbjct: 2   SEETPWYKKIGFGLKRTSERLTENLSSIALKAALDDETLDEIEETLIACDLGPGTAGRIR 61

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E L  +R+ + V+   V   V++ I K+L P++KP   D   RP VILV+GVNG GKTT 
Sbjct: 62  ERLAGERFPQGVTELEVREVVAQEIAKILKPVAKPIEIDAFPRPQVILVIGVNGSGKTTT 121

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL+    +   +VML AGDTFR+AAI QLK+WA+R     +    G+DAA+L ++  K
Sbjct: 122 IAKLAHWFQELDYEVMLVAGDTFRAAAIGQLKVWAERLEIPIISGAEGADAASLVFQGVK 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +  A+  D LI+DTAGRL N S LM  + K+ +VL RL+P APH+V+ VLDAT GQNAL 
Sbjct: 182 EGTAQGTDTLIVDTAGRLQNKSGLMDELAKIKKVLGRLNPAAPHNVILVLDATNGQNALS 241

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+E+F  +AG +GLIMTK+DGTARGG ++     + +P++ +GVGE ++DL PF  +  +
Sbjct: 242 QIEVFKEIAGVSGLIMTKLDGTARGGIMVAAAEKYGLPIHAIGVGESMDDLRPFDPEAVA 301

Query: 308 AVITG 312
             I G
Sbjct: 302 RAIVG 306


>gi|255261414|ref|ZP_05340756.1| cell division protein FtsY [Thalassiobium sp. R2A62]
 gi|255103749|gb|EET46423.1| cell division protein FtsY [Thalassiobium sp. R2A62]
          Length = 574

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/286 (45%), Positives = 194/286 (67%), Gaps = 1/286 (0%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  G    +  R LDD + E LE+LLI +D+GV  A ++   +   R+ K +SV  +   
Sbjct: 288 LGRGEKKTVVRRALDDDMLESLEELLITADMGVHTALRVTANMAEGRFGKKLSVDEIKEL 347

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           ++  + +++ P++KP    ++ +P V+LVVGVNG GKTT IGKL+ +   AG  V++AAG
Sbjct: 348 LASEVTRIMEPVAKPMPL-YAKKPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAG 406

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QL++W DR     + +  GSD A+LA++A  QA+A   D+L+IDTAGRL N
Sbjct: 407 DTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMTQAEADGADLLMIDTAGRLQN 466

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + K++RV+++ DP APH+ L VLDATTGQNAL QV+ F  +A  +GL+MTK+D
Sbjct: 467 RADLMEELAKIVRVIRKKDPEAPHNTLLVLDATTGQNALSQVKTFQELADVSGLVMTKLD 526

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           GTA+GG L+ +     +P++ +GVGE I+DL PF  +DF+A +TG 
Sbjct: 527 GTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEDFAAALTGL 572


>gi|85706875|ref|ZP_01037966.1| signal recognition particle-docking protein FtsY [Roseovarius sp.
           217]
 gi|85668668|gb|EAQ23538.1| signal recognition particle-docking protein FtsY [Roseovarius sp.
           217]
          Length = 397

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 131/286 (45%), Positives = 195/286 (68%), Gaps = 1/286 (0%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  G  ++   R LDD + E LE+LLI +D+GV  A ++   +   R  K +S Q +   
Sbjct: 110 LGRGAGEVAPRRVLDDAMLESLEELLIGADMGVDTALRVTANMAEGRMGKRLSTQEIKEL 169

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           +++ I +++ P+++P    ++ RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAG
Sbjct: 170 LAQEIARIMDPVARPMPI-YAKRPQVVLVVGVNGSGKTTTIGKLAAQFKSAGKSVVIAAG 228

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QL++W +R     + +  GSD A+LAY+A  +A+A+  D+L+IDTAGRL N
Sbjct: 229 DTFRAAAVEQLQVWGERAGVPVMTAPEGSDPASLAYDAMTRAEAEGADLLMIDTAGRLQN 288

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + K++RV+++ DP APH+ L VLDATTGQNAL QV  F  +A  +GLIMTK+D
Sbjct: 289 RADLMEELAKIVRVIRKKDPSAPHNTLLVLDATTGQNALSQVATFQKLADVSGLIMTKLD 348

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           GTARGG L+ +     +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 349 GTARGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPQEFAAALTGL 394


>gi|103488209|ref|YP_617770.1| signal recognition particle-docking protein FtsY [Sphingopyxis
           alaskensis RB2256]
 gi|98978286|gb|ABF54437.1| signal recognition particle-docking protein FtsY [Sphingopyxis
           alaskensis RB2256]
          Length = 308

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 137/303 (45%), Positives = 193/303 (63%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  +L  GF  TS +L E +  +    RLD+   + +E+ LI +D+G A+A +I + L 
Sbjct: 5   SWSERLLGGFRRTSERLGENLAGLTGKARLDEADLDRIEEALITADLGPAMAARIRDRLA 64

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +R       + +   V++ I  +L P+++P + D   RP VILV+GVNG GKTT I KL
Sbjct: 65  ERRDVAANGTEELRQIVADEIAAVLRPVAEPLDIDAFPRPQVILVIGVNGSGKTTTIAKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +    +    VML AGDTFR+AAI QLKIWA+R     +    G D+A + ++A K+A A
Sbjct: 125 AHLFQEQDYGVMLVAGDTFRAAAIGQLKIWAERLGVPIMAGPEGGDSAGIVFDAVKRATA 184

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +DVLI+DTAGRL N   LM  + K+ RVL RL+P APH V+ VLDATTGQNAL Q+++
Sbjct: 185 TGIDVLIVDTAGRLQNKRELMDELAKIKRVLGRLNPAAPHDVVLVLDATTGQNALSQIDV 244

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG TGL+MTK+DGTARGG L+     H +P++ +G+GE + DL PF A + + +I 
Sbjct: 245 FREVAGVTGLVMTKLDGTARGGVLVAAAERHGLPIHAIGIGETMEDLRPFDADEIAGIIA 304

Query: 312 GCL 314
           G +
Sbjct: 305 GNI 307


>gi|331007678|ref|ZP_08330814.1| Signal recognition particle receptor protein FtsY [gamma
           proteobacterium IMCC1989]
 gi|330418521|gb|EGG93051.1| Signal recognition particle receptor protein FtsY [gamma
           proteobacterium IMCC1989]
          Length = 399

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/311 (47%), Positives = 206/311 (66%), Gaps = 7/311 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           SL++ +++ KG + TS +L EGI  ++   + +DD + EELE  L+ +D+G+    +I++
Sbjct: 77  SLAFFQRIKKGLSRTSSQLVEGIASVVLGKKHIDDELLEELETQLLMADVGIDATTQIID 136

Query: 69  ELLTKRYAKDVSVQRVLY-----DVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGV 122
           +L      K ++    LY      + +L+     P+  +P   D    P V LVVGVNGV
Sbjct: 137 KLTKAVERKQLNDGDSLYAALQQQLRDLLVDTQAPMMIQPQFADGKKMPMVTLVVGVNGV 196

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K++ + G +VMLAAGDTFR+AA++QLKIW DR     V  + G+D+A++ 
Sbjct: 197 GKTTTIGKLTKRLQNEGKQVMLAAGDTFRAAAVEQLKIWGDRNQVAVVSQDTGADSASVI 256

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   AQAK +DVLI DTAGRLHN S LM  + K+ RV+ +LDP+APH VL VLDA TG
Sbjct: 257 YDALSSAQAKGIDVLIADTAGRLHNKSHLMDELAKVKRVMAKLDPNAPHEVLLVLDAGTG 316

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q E F   AG TGL++TK+DGTA+GG +  +    K+P+ F+GVGEGI+DL+PFV
Sbjct: 317 QNALSQAEHFIKAAGVTGLVLTKLDGTAKGGIVFALSERFKLPIRFIGVGEGIDDLQPFV 376

Query: 303 AKDFSAVITGC 313
           A DF   + G 
Sbjct: 377 ADDFVRALFGT 387


>gi|254510515|ref|ZP_05122582.1| signal recognition particle-docking protein FtsY [Rhodobacteraceae
           bacterium KLH11]
 gi|221534226|gb|EEE37214.1| signal recognition particle-docking protein FtsY [Rhodobacteraceae
           bacterium KLH11]
          Length = 379

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/296 (44%), Positives = 200/296 (67%), Gaps = 3/296 (1%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           T+G        +E  T I   R LDD + E+LE+LLI SD+GV  A ++   +   R+ +
Sbjct: 85  TRGLLGKLFNRREDRTAI--RRTLDDDMLEQLEELLIASDMGVDTALRVTANMAEGRFGR 142

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
            +S Q +   +++ + +++ P++KP    +  RP V+LVVGVNG GKTT IGKL+ +   
Sbjct: 143 KLSTQEIKALLAQEVARVMDPVAKPMPL-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKA 201

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           AG KV++AAGDTFR+AA++QL++W DR     + +  GSD A+LA++A  +AQ +  D+L
Sbjct: 202 AGKKVVIAAGDTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDALTKAQNEGTDLL 261

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDTAGRL N + LM  + K++RV++++D  APH+ L VLDATTGQNAL QVE F  +A 
Sbjct: 262 MIDTAGRLQNRADLMEELAKIVRVIRKVDDTAPHNTLLVLDATTGQNALSQVETFRKLAD 321

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +GL+MTK+DGTA+GG L+ +     +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 322 VSGLVMTKLDGTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 377


>gi|149186850|ref|ZP_01865160.1| signal recognition particle GTPase [Erythrobacter sp. SD-21]
 gi|148829517|gb|EDL47958.1| signal recognition particle GTPase [Erythrobacter sp. SD-21]
          Length = 307

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 138/302 (45%), Positives = 190/302 (62%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  +L  GF  TS +L E + + ++  +LDD   +++ED LI SD+G + A +I E L 
Sbjct: 5   SWTERLFGGFKKTSERLSENLAEAVTKAKLDDATLDDVEDALIMSDLGPSAAARIRERLK 64

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            KR+  ++S   +   V+E I  +L P++KP       RP V+LV+GVNG GKTT I KL
Sbjct: 65  EKRFGLEISADELKEAVAEEIAAILRPVAKPLEITAFPRPQVLLVIGVNGSGKTTTIAKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +    +    VMLAAGDTFR+AAI QL+ WADR     V    G D A++ ++A ++   
Sbjct: 125 AHLFVEDDYNVMLAAGDTFRAAAIGQLQTWADRVGVPIVRGPEGGDPASIVFDAVRKGTE 184

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLI+DTAGRL N   LM  + K+ +VL RL+P APH V+ VLDAT GQNAL Q+++
Sbjct: 185 IGTDVLIVDTAGRLQNKRELMDELAKIRKVLGRLNPEAPHDVVLVLDATNGQNALSQIDV 244

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG TGL+MTK+DGTARGG L+     + +P++ +GVGE I+DL PF     + VI 
Sbjct: 245 FKEVAGVTGLVMTKLDGTARGGVLVQAAKKYGLPIHAIGVGEKIDDLRPFDPDLVARVIA 304

Query: 312 GC 313
           G 
Sbjct: 305 GI 306


>gi|119384655|ref|YP_915711.1| signal recognition particle-docking protein FtsY [Paracoccus
           denitrificans PD1222]
 gi|119374422|gb|ABL70015.1| signal recognition particle-docking protein FtsY [Paracoccus
           denitrificans PD1222]
          Length = 346

 Score =  266 bits (680), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 129/277 (46%), Positives = 192/277 (69%), Gaps = 1/277 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + EELE++LI++D+GV  A ++   +   R  + VS   +   +++ I +++ P
Sbjct: 71  RELDDAMLEELEEMLIQADMGVETALRVTANIAEGRMGRRVSATELKELLADEIARIMTP 130

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++KP    +  RP V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA++QL
Sbjct: 131 VAKPLPL-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQL 189

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W  R     + +  GSD A+LA++A  +A+A+  D+L+IDTAGRL N   LM  + K+
Sbjct: 190 QVWGQRAGVPVMTAPEGSDPASLAFDAMTKAEAEGADLLMIDTAGRLQNRQDLMEELAKI 249

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+ L VLDATTGQNAL QVE+F  +A  +GL+MTK+DGTARGG L+ +
Sbjct: 250 VRVIRKKDPSAPHNTLLVLDATTGQNALSQVEIFRKLADVSGLVMTKLDGTARGGVLVAL 309

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +P++ +GVGE I+DL+ F A+DF+  + G  D
Sbjct: 310 ADRFGLPIHAIGVGEQIDDLDAFDARDFARALVGLGD 346


>gi|197103597|ref|YP_002128974.1| signal recognition particle-docking protein FtsY [Phenylobacterium
           zucineum HLK1]
 gi|196477017|gb|ACG76545.1| signal recognition particle-docking protein FtsY [Phenylobacterium
           zucineum HLK1]
          Length = 314

 Score =  266 bits (680), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/304 (42%), Positives = 199/304 (65%), Gaps = 1/304 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           W ++LT+G   +S ++ + I  + +++  LD    +ELE++LI +D+G   A +I     
Sbjct: 8   WFQRLTQGLTKSSKQMGDQIASVFTAKEPLDQAKLDELEEMLIEADLGPHSAARITARFA 67

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +++ KDV  + +   +++ I   L      F+     RP+V+L +GVNG GKTT +GK+
Sbjct: 68  EEKFGKDVGEEEIKEALAQAIGDELSSRQGGFDPLSGPRPYVVLFIGVNGSGKTTTLGKI 127

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G KV++ AGDTFR+AA++QLK+WA+R  ADF+    GSDAA LA++A ++A+A
Sbjct: 128 AADLRSRGAKVLIVAGDTFRAAAVEQLKVWAERAGADFMGRPTGSDAAGLAFDAVQRAKA 187

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV++IDTAGRL N   LM  + K+IRV+K+LDP APH  L VLDAT G+NAL Q  +
Sbjct: 188 EGYDVVLIDTAGRLQNKQGLMDELLKIIRVVKKLDPEAPHETLLVLDATVGRNALNQENI 247

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G +G++MTK+DGTARGG L+P+      P+  +GVGEGI+DL+PF A+ F+  + 
Sbjct: 248 FGNQIGVSGIVMTKLDGTARGGVLVPVAQASDSPIKLIGVGEGIDDLQPFDARAFARSLV 307

Query: 312 GCLD 315
           G  +
Sbjct: 308 GLAE 311


>gi|84500000|ref|ZP_00998266.1| signal recognition particle-docking protein FtsY [Oceanicola
           batsensis HTCC2597]
 gi|84391934|gb|EAQ04202.1| signal recognition particle-docking protein FtsY [Oceanicola
           batsensis HTCC2597]
          Length = 440

 Score =  266 bits (679), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 131/275 (47%), Positives = 190/275 (69%), Gaps = 1/275 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LE+LLI SD+GV  A ++   +   R  + +S   +   +++ + +++ P
Sbjct: 161 RALDDDMLEQLEELLIASDMGVDTALRVASNMAEGRMGRRLSTAEIKGLLADEVTRIMEP 220

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    F  +P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 221 VARPLPL-FPKKPQVVLVVGVNGSGKTTTIGKLASQFRGAGKSVVIAAGDTFRAAAVEQL 279

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +IW DR     + +  GSD AALAY+A ++A+A+  D+L+IDTAGRL N + LM  + K+
Sbjct: 280 EIWGDRAGVPVLKAAEGSDPAALAYDALEKAEAEGADLLMIDTAGRLQNRADLMEELAKI 339

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RVL++ DP APH+ L VLDATTGQNAL QVE F  +A  TGL+MTK+DGTA+GG L+ +
Sbjct: 340 VRVLRKRDPSAPHNTLLVLDATTGQNALSQVETFRKMADVTGLVMTKLDGTAKGGVLVAL 399

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +P++ +GVGE I+DL PF   DF+  +TG 
Sbjct: 400 ADKFGLPIHAIGVGEQIDDLAPFDPGDFARALTGA 434


>gi|163740777|ref|ZP_02148170.1| signal recognition particle-docking protein FtsY [Phaeobacter
           gallaeciensis 2.10]
 gi|161385768|gb|EDQ10144.1| signal recognition particle-docking protein FtsY [Phaeobacter
           gallaeciensis 2.10]
          Length = 415

 Score =  265 bits (678), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 127/274 (46%), Positives = 192/274 (70%), Gaps = 1/274 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LEDLL+ +D+GV  A ++   +   R  K +S + +   ++  + +++ P
Sbjct: 139 RALDDDMLEQLEDLLVGADMGVDTALRVTANMAEGRLGKRLSTREIKELLAAEVARIMEP 198

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    ++ RP V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA++QL
Sbjct: 199 VARPMPI-YAKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQL 257

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD A+LA++A  +AQ +  D+L+IDTAGRL N + LM  + K+
Sbjct: 258 QVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEEGADLLMIDTAGRLQNRADLMEELAKI 317

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+ L VLDATTGQNAL QV+ F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 318 VRVIQKKDPSAPHNTLLVLDATTGQNALNQVDTFQKLADVSGLVMTKLDGTAKGGVLVAL 377

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                +P++ +GVGE I+DL PF  +DF+A +TG
Sbjct: 378 ADRFGLPIHAIGVGEQIDDLAPFDPEDFAAALTG 411


>gi|149202012|ref|ZP_01878986.1| signal recognition particle-docking protein FtsY [Roseovarius sp.
           TM1035]
 gi|149145060|gb|EDM33089.1| signal recognition particle-docking protein FtsY [Roseovarius sp.
           TM1035]
          Length = 403

 Score =  265 bits (677), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 129/279 (46%), Positives = 191/279 (68%), Gaps = 1/279 (0%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93
           D    R LDD + E LE+LLI +D+GV  A ++   +   R  K +S Q +   +++ I 
Sbjct: 122 DSAPRRVLDDAMLESLEELLIAADMGVDTALRVTANMAEGRMGKRLSTQEIKELLAQEIA 181

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           +++ P+++P    ++ RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+A
Sbjct: 182 RIMEPVARPMPI-YAKRPQVVLVVGVNGSGKTTTIGKLAAQFKGAGKSVVIAAGDTFRAA 240

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++QL++W  R     + +  GSD A+LA++A  +A+A+  D+L+IDTAGRL N + LM 
Sbjct: 241 AVEQLQVWGQRAGVPVMTAPEGSDPASLAFDAMTRAEAEGADLLMIDTAGRLQNRADLME 300

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K++RV+++ DP APH+ L VLDATTGQNAL QV  F  +A  +GL+MTK+DGTARGG
Sbjct: 301 ELAKIVRVIRKKDPSAPHNTLLVLDATTGQNALSQVATFQKLADVSGLVMTKLDGTARGG 360

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            L+ +     +P++ +GVGE I+DL PF  +DF+A +TG
Sbjct: 361 VLVALADKFGLPIHAIGVGEQIDDLAPFDPQDFAAALTG 399


>gi|257455444|ref|ZP_05620679.1| cell division protein FtsY [Enhydrobacter aerosaccus SK60]
 gi|257447406|gb|EEV22414.1| cell division protein FtsY [Enhydrobacter aerosaccus SK60]
          Length = 404

 Score =  265 bits (677), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 135/296 (45%), Positives = 193/296 (65%), Gaps = 2/296 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           W  ++ +G + +   L EG+T+I I  + +DD + EE+ED L+ +DIGV    +I++ L 
Sbjct: 100 WFSRMKQGLSKSRKNLTEGLTNILIGGKEIDDELLEEVEDQLLVADIGVNATNRIIKNLT 159

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                 D+     LY  + + +  +L P   P   D S +P VILVVGVNGVGKTT IGK
Sbjct: 160 EATARGDLIYSHSLYKALQKELTDILTPKVAPLVVDASTKPFVILVVGVNGVGKTTTIGK 219

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K++   G  VMLAAGDTFR+AA +QL++W +R +   V    GSD+A++ ++A + A+
Sbjct: 220 LAKRLQGEGKSVMLAAGDTFRAAATEQLQVWGERNNIPVVAQGHGSDSASVIFDAIQSAK 279

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DVLI DTAGRL N + LM  + K+IRV+++ DP APH  + VLDA TGQNAL QVE
Sbjct: 280 ARGIDVLIADTAGRLQNKTNLMEELKKVIRVMQKADPTAPHESMIVLDAGTGQNALNQVE 339

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F+     TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL PF A DF
Sbjct: 340 IFNEAVPLTGVTVTKLDGTAKGGVVFNIAENTNVPIRFIGVGEKIDDLRPFQADDF 395


>gi|209965480|ref|YP_002298395.1| cell division ABC transporter, periplasmic substrate-binding
           protein FtsY [Rhodospirillum centenum SW]
 gi|209958946|gb|ACI99582.1| cell division ABC transporter, periplasmic substrate-binding
           protein FtsY [Rhodospirillum centenum SW]
          Length = 402

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 143/305 (46%), Positives = 207/305 (67%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
            E   W  +L  G + ++ +L EGI+ I + R+LDD   EELE+LLIR+D+G   A ++ 
Sbjct: 95  PERKGWFARLKDGLSKSTSRLTEGISGIFTKRKLDDEALEELEELLIRADLGPTTAARMT 154

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             L   R+ K+VS Q V   ++  + K++ P+++P   +   RPHVIL+VGVNG GKTT 
Sbjct: 155 AGLARTRFGKEVSPQEVREYLAGEVQKLVEPVARPLVIEPERRPHVILLVGVNGTGKTTT 214

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL++++ + G  V +AAGDTFR+AA+ QLK+W +RT    V  + G+DAA LA+EA +
Sbjct: 215 IGKLARQLREEGKTVWMAAGDTFRAAAVSQLKVWGERTGCPVVAKDTGADAAGLAFEALE 274

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+A   DVL+IDTAGRL N + LM  + K++RV+K+LDP APH+ L  LDATTGQNA  
Sbjct: 275 KARAAGADVLLIDTAGRLQNKTGLMEELRKIVRVIKKLDPEAPHTTLLTLDATTGQNAHS 334

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QVE+F  +    GL++TK+DG+ARGG L+ +     +PV+ +GVGEG+ DL PF A+ F+
Sbjct: 335 QVEVFKEMVAINGLVLTKLDGSARGGVLVALAEKFGLPVHAIGVGEGVYDLRPFDARQFA 394

Query: 308 AVITG 312
             + G
Sbjct: 395 RALVG 399


>gi|93006307|ref|YP_580744.1| signal recognition particle-docking protein FtsY [Psychrobacter
           cryohalolentis K5]
 gi|92393985|gb|ABE75260.1| signal recognition particle-docking protein FtsY [Psychrobacter
           cryohalolentis K5]
          Length = 477

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/313 (44%), Positives = 201/313 (64%), Gaps = 4/313 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIG 59
           +  ++ +S+  SW  ++  G + +   L EG+  I I  + +DD + EE+ED L+ +DIG
Sbjct: 159 LQEEQESSKKGSWFNRMKTGLSKSRKNLAEGMVSILIGGKEIDDELLEEVEDQLLVADIG 218

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           V    +I++ L  +    D+     LY    +EL+  +L P   P   D S +P VILVV
Sbjct: 219 VNATNRIIKSLTEQTDRGDLIYAHSLYKALQTELVD-ILTPKVAPLIIDSSKKPFVILVV 277

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+K++   G  VMLAAGDTFR+AA +QL+IW +R     V    GSD
Sbjct: 278 GVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGERNHIPVVAQGHGSD 337

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           +A++ ++A + A+AK +DVLI DTAGRL N + LMA + K++RV+++ DP APH  + VL
Sbjct: 338 SASVIFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADPSAPHEGMIVL 397

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQNA+ QVE+F+ V   TG+ +TK+DGTA+GG +  I  T  +P+ ++GVGE I+D
Sbjct: 398 DAGTGQNAINQVELFNKVVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDD 457

Query: 298 LEPFVAKDFSAVI 310
           L  F  K F A +
Sbjct: 458 LRAFSPKQFVAAL 470


>gi|84515411|ref|ZP_01002773.1| Signal recognition particle-docking protein FtsY [Loktanella
           vestfoldensis SKA53]
 gi|84510694|gb|EAQ07149.1| Signal recognition particle-docking protein FtsY [Loktanella
           vestfoldensis SKA53]
          Length = 323

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 192/275 (69%), Gaps = 1/275 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + EELEDLLI +D+GV  AQ+++  +      K VSV+ V   +   + +++ P
Sbjct: 48  RALDDAMLEELEDLLIAADMGVETAQRVIANIAEGHLGKRVSVEEVKRLLMAEVVRIMEP 107

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    ++  P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 108 VARPLPI-YAKTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKNVVIAAGDTFRAAAVEQL 166

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W  R     + +  GSD A+LAY+A  +AQA   D+L+IDTAGRL N + LM  + K+
Sbjct: 167 QVWGQRAGVPVLTAPEGSDPASLAYDAMTKAQADGADLLMIDTAGRLQNRADLMEELSKI 226

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+VL VLDATTGQNA++QV++F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 227 VRVIRKKDPDAPHNVLLVLDATTGQNAVQQVKVFQELAAVSGLVMTKLDGTAKGGVLVSL 286

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +P++ +GVGE I+DL PF  ++F+A + G 
Sbjct: 287 ADRFGLPIHAIGVGEQIDDLAPFDPEEFAAALVGL 321


>gi|126733156|ref|ZP_01748903.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           CCS2]
 gi|126716022|gb|EBA12886.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           CCS2]
          Length = 315

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/278 (45%), Positives = 194/278 (69%), Gaps = 1/278 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           +  R LDD + E+LE+LLI +D+GV  A ++   +   R  + +SVQ +   +++ + ++
Sbjct: 37  VVKRTLDDDMLEQLEELLITADMGVDTALRVTANMAEGRLGRKLSVQEIKELMAQEVSRI 96

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + P+++P    ++  P V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA+
Sbjct: 97  MEPVARPMPL-YTKTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKKVVIAAGDTFRAAAV 155

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL++W +R     + +  GSD A+LA++A  QAQA   D+L+IDTAGRL N + LM  +
Sbjct: 156 EQLQVWGERADVPVLTAPEGSDPASLAFDAMTQAQADGADLLMIDTAGRLQNRADLMEEL 215

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K++RV+++ DP APH+ L VLDATTGQNA++QV++F  +A  +GL+MTK+DGTA+GG L
Sbjct: 216 AKIVRVIRKKDPDAPHNTLLVLDATTGQNAVQQVKVFQELADVSGLVMTKLDGTAKGGVL 275

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           + +     +P++ +GVGE I+DL PF   DF+A + G 
Sbjct: 276 VALADKFGLPIHAIGVGEQIDDLAPFDPDDFAAALVGL 313


>gi|163737648|ref|ZP_02145065.1| signal recognition particle-docking protein FtsY [Phaeobacter
           gallaeciensis BS107]
 gi|161389174|gb|EDQ13526.1| signal recognition particle-docking protein FtsY [Phaeobacter
           gallaeciensis BS107]
          Length = 415

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/274 (45%), Positives = 191/274 (69%), Gaps = 1/274 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LEDLL+ +D+GV  A ++   +   R  K +S + +   ++  + +++ P
Sbjct: 139 RALDDDMLEQLEDLLVGADMGVDTALRVTANMAEGRLGKRLSTREIKELLAAEVARIMEP 198

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    ++ RP V+LVVGVNG GKTT IGKL+ +    G KV++AAGDTFR+AA++QL
Sbjct: 199 VARPMPI-YAKRPQVVLVVGVNGSGKTTTIGKLASQFKAVGKKVVIAAGDTFRAAAVEQL 257

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD A+LA++A  +AQ +  D+L+IDTAGRL N + LM  + K+
Sbjct: 258 QVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEEGADLLMIDTAGRLQNRADLMEELAKI 317

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+ L VLDATTGQNAL QV+ F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 318 VRVIQKKDPSAPHNTLLVLDATTGQNALNQVDTFQKLADVSGLVMTKLDGTAKGGVLVAL 377

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                +P++ +GVGE I+DL PF  +DF+A +TG
Sbjct: 378 ADRFGLPIHAIGVGEQIDDLAPFDPEDFAAALTG 411


>gi|126725602|ref|ZP_01741444.1| signal recognition particle-docking protein FtsY [Rhodobacterales
           bacterium HTCC2150]
 gi|126704806|gb|EBA03897.1| signal recognition particle-docking protein FtsY [Rhodobacterales
           bacterium HTCC2150]
          Length = 420

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 126/275 (45%), Positives = 192/275 (69%), Gaps = 1/275 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LE+LLI SD+GV  A ++   +   R+ K +S   +   +++ + ++L P
Sbjct: 145 RVLDDDMLEQLEELLITSDMGVETALRVTANMAEGRFGKKLSSSEIKSLLAQEVARILEP 204

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++KP    ++ +P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 205 VAKPMPL-YTKKPQVVLVVGVNGSGKTTTIGKLASQFKAAGKSVVIAAGDTFRAAAVEQL 263

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W +R +   + +  GSD A+LA++A  +A+    D+L+IDTAGRL N S LM  + K+
Sbjct: 264 QVWGERANVPVLTAPEGSDPASLAFDAMTKAENDGADLLLIDTAGRLQNRSDLMEELAKI 323

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+ L VLDATTGQNAL QV+ F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 324 VRVIRKKDPEAPHNTLLVLDATTGQNALNQVDAFQKLADVSGLVMTKLDGTAKGGVLVAL 383

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 384 ADRFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGT 418


>gi|326560132|gb|EGE10522.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis 46P47B1]
 gi|326573383|gb|EGE23351.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis 101P30B1]
          Length = 313

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/302 (44%), Positives = 197/302 (65%), Gaps = 4/302 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           +E   W  ++  G + +S  L EG+ ++ +  +++DD + EE+ED L+ +DIGV    +I
Sbjct: 4   NEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNRI 63

Query: 67  VEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++ L  +    D+     LY    +EL   +L P   P   D + +P+VIL+VGVNGVGK
Sbjct: 64  IKNLTEQTARGDLIYSHALYKALKTELTD-ILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++ + G  VMLAAGDTFR+AA +QL+IW +R     V    GSD+A++ ++
Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIPVVAQGHGSDSASVIFD 182

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+AK +DVLI DTAGRL N + LM  + K++RV+K+ D  APH  + VLDA TGQN
Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ QV++F      TG+ +TK+DGTA+GG +  I     IP+ F+GVGEGI+DL+PF  K
Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302

Query: 305 DF 306
           DF
Sbjct: 303 DF 304


>gi|284008656|emb|CBA75288.1| cell division protein [Arsenophonus nasoniae]
          Length = 414

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 127/296 (42%), Positives = 199/296 (67%), Gaps = 2/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           ++  +L +G   T   +  G       +++DD + +ELE+ L+ +D+G+   +KI++ L 
Sbjct: 111 NFFSRLRRGLLKTRQNMGIGFVSFFRGKKIDDDLFDELEEQLLIADVGLETTRKIIDSLT 170

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K+++   +LY  + E +  +L  + KP   + +  P+VIL+VGVNGVGKTT IGK
Sbjct: 171 NHANRKELNDAAMLYSKLREEMANILSGVEKPLVIE-NKLPYVILMVGVNGVGKTTTIGK 229

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+++    G  VMLAAGDTFR+AA++QL++W +R +   V  + G+D A++ ++A + A+
Sbjct: 230 LARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQQTGADPASVIFDAIQSAK 289

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK +D+LI DTAGRL N + LM  + K++RV+++LD HAPH V+  LDA+TGQNA+ Q +
Sbjct: 290 AKGIDILIADTAGRLQNKTHLMEELKKIVRVMQKLDQHAPHEVMLTLDASTGQNAINQAK 349

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +FH   G TG+I+TK+DGTA+GG +  I    KIP+ ++G+GEGI+DL PFVA DF
Sbjct: 350 IFHEAVGLTGIILTKLDGTAKGGVIFAIADQFKIPIRYIGIGEGIDDLRPFVAHDF 405


>gi|119944395|ref|YP_942075.1| signal recognition particle-docking protein FtsY [Psychromonas
           ingrahamii 37]
 gi|119862999|gb|ABM02476.1| signal recognition particle-docking protein FtsY [Psychromonas
           ingrahamii 37]
          Length = 453

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/306 (40%), Positives = 198/306 (64%), Gaps = 1/306 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             QK   ++L +  +  +    T L +  G+  + S +++D  + EELE+ LI +DIGV 
Sbjct: 136 EKQKTEEKALGFFARFKQSLTKTRLSIGSGLYSLFSGKKIDADLFEELEEQLILADIGVD 195

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              KI+++L  +   K +     LY +  E +  +L  + +P   D +  P+VIL+VGVN
Sbjct: 196 TTLKIIDKLTAQANRKQLKDAEALYTLLKEDLSGILQEVEQPLVIDETKSPYVILMVGVN 255

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+KK    G  VMLAAGDTFR+AA++QL++W +R +   +  + GSD+A+
Sbjct: 256 GVGKTTTIGKLAKKYQQQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQQTGSDSAS 315

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A   A+A+ +DVLI DTAGRL N   LM  + K++R++++ DP APH ++  +DA+
Sbjct: 316 VLFDAMDAAKARGIDVLIADTAGRLQNKEHLMDELSKVVRIMRKKDPSAPHEIMLTIDAS 375

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I   +K+P+ ++G GEGI+DL  
Sbjct: 376 TGQNAISQADLFNKAVGITGITLTKLDGTAKGGVIFSIADKYKLPIRYIGTGEGIDDLRE 435

Query: 301 FVAKDF 306
           F A++F
Sbjct: 436 FNAREF 441


>gi|192973052|gb|ACF06951.1| signal recognition partical docking protein FtsY [uncultured
           Roseobacter sp.]
          Length = 395

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 131/288 (45%), Positives = 195/288 (67%), Gaps = 1/288 (0%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
           L  K G+      R LDD + E+LE+LLI SD+GV  A +I   L   R+ + +S   + 
Sbjct: 107 LPQKTGVFGRAPRRVLDDDMLEQLEELLISSDMGVDTAVRITANLAEGRFGRKLSTAEIK 166

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
             ++E I +++ P+++P    ++ +P VILVVGVNG GKTT IGKL+ +   AG  V++A
Sbjct: 167 SALAEEIARVMEPVARPLPI-YNKKPQVILVVGVNGSGKTTTIGKLASQFKKAGKSVVIA 225

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           AGDTFR+AA+ QL++W +R     + +  GSD A+LA++A  QA+    D+L+IDTAGRL
Sbjct: 226 AGDTFRAAAVGQLQVWGERAGVPVMTAAEGSDPASLAFDAMTQAEKDGADLLMIDTAGRL 285

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N + LM  + K+IRV+++ DP APH+ + VLDATTGQNA+ QVE+F  +A  TGL+MTK
Sbjct: 286 QNRADLMEELSKIIRVIRKKDPDAPHNTVLVLDATTGQNAVNQVEVFRKMADVTGLVMTK 345

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +DGTA+GG L+ +     +P++ +GVGE I+DL+ F  ++F+A +TG 
Sbjct: 346 LDGTAKGGVLVSLADKFALPIHAIGVGEQIDDLDAFDPQEFAAALTGV 393


>gi|256823779|ref|YP_003147742.1| signal recognition particle-docking protein FtsY [Kangiella
           koreensis DSM 16069]
 gi|256797318|gb|ACV27974.1| signal recognition particle-docking protein FtsY [Kangiella
           koreensis DSM 16069]
          Length = 427

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 129/301 (42%), Positives = 203/301 (67%), Gaps = 4/301 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           +E   +  +L  G + T  +L + + +++  S+ +DD + E++E  L+ +D+GV+  +KI
Sbjct: 116 AEKQGFFSRLKAGLSRTRGQLADSLANLVLGSKEIDDDLLEDIETQLLMADVGVSATRKI 175

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +++L  K   K++   + L D + +L+ +++ P ++P   + +H+P VIL+VGVNGVGKT
Sbjct: 176 IDDLTDKAARKELKDPQALMDRLRQLLSEIIEPCTQPL--ELTHKPFVILMVGVNGVGKT 233

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+KK    G  VMLAAGDTFR+AA++QL++W +R +        G+D+A++ ++A
Sbjct: 234 TTIGKLAKKFQGEGKSVMLAAGDTFRAAAVEQLQVWGERNNIHVTAQHTGADSASVIFDA 293

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + AQA+K+DVLI DTAGRLH  S LM  + K+ RV+++LDP APH V+ V+DA TGQNA
Sbjct: 294 LQAAQARKIDVLIADTAGRLHTKSNLMDELSKVQRVMQKLDPSAPHEVMLVVDAGTGQNA 353

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q E F+     +G+ +TK+DGTA+GG +  +    K P+ F+GVGEGI+DL  F  +D
Sbjct: 354 LNQAEHFNKAVPLSGITITKLDGTAKGGIIFALADKMKTPIRFIGVGEGIDDLREFNGQD 413

Query: 306 F 306
           F
Sbjct: 414 F 414


>gi|326565395|gb|EGE15572.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis 103P14B1]
 gi|326575720|gb|EGE25643.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis CO72]
          Length = 313

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 134/302 (44%), Positives = 197/302 (65%), Gaps = 4/302 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           +E   W  ++  G + +S  L EG+ ++ +  +++DD + EE+ED L+ +DIGV    +I
Sbjct: 4   NEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNRI 63

Query: 67  VEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++ L  +    D+     LY    +EL   +L P   P   D + +P+VIL+VGVNGVGK
Sbjct: 64  IKNLTEQTARGDLIYSHALYKALKTELTD-ILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++ + G  VMLAAGDTFR+AA +QL+IW +R     +    GSD+A++ ++
Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIPVIAQGHGSDSASVIFD 182

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+AK +DVLI DTAGRL N + LM  + K++RV+K+ D  APH  + VLDA TGQN
Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ QV++F      TG+ +TK+DGTA+GG +  I     IP+ F+GVGEGI+DL+PF  K
Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302

Query: 305 DF 306
           DF
Sbjct: 303 DF 304


>gi|296113141|ref|YP_003627079.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis RH4]
 gi|295920835|gb|ADG61186.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis RH4]
 gi|326560515|gb|EGE10897.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis 7169]
 gi|326565755|gb|EGE15917.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis BC1]
 gi|326570406|gb|EGE20446.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis BC8]
 gi|326571092|gb|EGE21116.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis BC7]
 gi|326577186|gb|EGE27080.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis O35E]
          Length = 313

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 134/302 (44%), Positives = 197/302 (65%), Gaps = 4/302 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           +E   W  ++  G + +S  L EG+ ++ +  +++DD + EE+ED L+ +DIGV    +I
Sbjct: 4   NEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNRI 63

Query: 67  VEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++ L  +    D+     LY    +EL   +L P   P   D + +P+VIL+VGVNGVGK
Sbjct: 64  IKNLTEQTARGDLIYSHALYKALKTELTD-ILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++ + G  VMLAAGDTFR+AA +QL+IW +R     +    GSD+A++ ++
Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIAVIAQGHGSDSASVIFD 182

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+AK +DVLI DTAGRL N + LM  + K++RV+K+ D  APH  + VLDA TGQN
Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ QV++F      TG+ +TK+DGTA+GG +  I     IP+ F+GVGEGI+DL+PF  K
Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302

Query: 305 DF 306
           DF
Sbjct: 303 DF 304


>gi|326564152|gb|EGE14388.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis 12P80B1]
          Length = 313

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 134/302 (44%), Positives = 197/302 (65%), Gaps = 4/302 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           +E   W  ++  G + +S  L EG+ ++ +  +++DD + EE+ED L+ +DIGV    +I
Sbjct: 4   NEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNRI 63

Query: 67  VEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++ L  +    D+     LY    +EL   +L P   P   D + +P+VIL+VGVNGVGK
Sbjct: 64  IKNLTEQAARGDLIYSHALYKALKTELTD-ILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++ + G  VMLAAGDTFR+AA +QL+IW +R     +    GSD+A++ ++
Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIAVIAQGHGSDSASVIFD 182

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+AK +DVLI DTAGRL N + LM  + K++RV+K+ D  APH  + VLDA TGQN
Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ QV++F      TG+ +TK+DGTA+GG +  I     IP+ F+GVGEGI+DL+PF  K
Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302

Query: 305 DF 306
           DF
Sbjct: 303 DF 304


>gi|192360531|ref|YP_001983953.1| signal recognition particle receptor FtsY [Cellvibrio japonicus
           Ueda107]
 gi|190686696|gb|ACE84374.1| signal recognition particle receptor FtsY [Cellvibrio japonicus
           Ueda107]
          Length = 374

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 131/302 (43%), Positives = 201/302 (66%), Gaps = 2/302 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65
           A   L +  ++ +G + TS    EG+  +   R+ +D+ + EELE  L+ +D+G+    +
Sbjct: 63  AEPKLGFFARIKRGLSRTSSHFAEGLGKLFLGRKTIDEELFEELETQLLIADVGMEATSE 122

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L ++   K ++    L+  + E + ++L P+ +P     +++P+VILVVGVNGVGK
Sbjct: 123 IIDNLTSRVARKQLADSDALFAALREQLAELLRPVEQPLVIPAANKPYVILVVGVNGVGK 182

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++ + G KVMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++
Sbjct: 183 TTTIGKLAKRLQNDGRKVMLAAGDTFRAAAVEQLQVWGQRNNVPVIAQHSGADSASVIFD 242

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   AQ++ +DV+I DTAGRLHN + LM  + K+ RV+ +LD  APH VL VLDA TGQN
Sbjct: 243 ALSAAQSRGIDVVIADTAGRLHNKNHLMDELAKVKRVMAKLDVSAPHEVLLVLDAGTGQN 302

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q E F   AG TG+ +TK+DGTA+GG +  +     +PV F+GVGEGI+DL+PF A+
Sbjct: 303 ALNQAEQFRDAAGVTGIALTKLDGTAKGGVIFALSKKFGLPVRFIGVGEGIDDLQPFAAE 362

Query: 305 DF 306
            F
Sbjct: 363 PF 364


>gi|254476268|ref|ZP_05089654.1| signal recognition particle-docking protein FtsY [Ruegeria sp. R11]
 gi|214030511|gb|EEB71346.1| signal recognition particle-docking protein FtsY [Ruegeria sp. R11]
          Length = 418

 Score =  262 bits (670), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 127/274 (46%), Positives = 190/274 (69%), Gaps = 1/274 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LEDLL+ +D+GV  A ++   +   RY K +S + +   ++  + +++ P
Sbjct: 142 RVLDDEMLEQLEDLLVGADMGVDTALRVTANMAEGRYGKRLSAREIKELLAGEVARIMEP 201

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    +  RP V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA++QL
Sbjct: 202 VARPMPI-YEKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQL 260

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD A+LA++A  +AQ    D+L+IDTAGRL N + LM  + K+
Sbjct: 261 QVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEDGADLLMIDTAGRLQNRADLMEELAKI 320

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ D  APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 321 VRVIRKKDETAPHNTLLVLDATTGQNALNQVETFQKLADVSGLVMTKLDGTAKGGVLVAL 380

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                +P++ +GVGE I+DL PF  ++F+A +TG
Sbjct: 381 ADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTG 414


>gi|294638159|ref|ZP_06716415.1| cell division protein FtsY [Edwardsiella tarda ATCC 23685]
 gi|291088726|gb|EFE21287.1| cell division protein FtsY [Edwardsiella tarda ATCC 23685]
          Length = 500

 Score =  262 bits (669), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 131/300 (43%), Positives = 194/300 (64%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   +KI++ L T
Sbjct: 198 FFARLKRSLVKTRQNLGSGFFGLFRGKKIDDDLFDELEEQLLVADVGVDTTRKIIDTLTT 257

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTT 126
               K++     LY     ++ E++HK+  PL      D S H+P VIL+VGVNGVGKTT
Sbjct: 258 HASRKELKDAEALYGKLKQEMGEILHKVDAPL------DISGHQPFVILMVGVNGVGKTT 311

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A 
Sbjct: 312 TIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAI 371

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+KVDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+
Sbjct: 372 QAAKARKVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEQAPHEVMLTIDASTGQNAI 431

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF A DF
Sbjct: 432 SQARLFHEAVGLTGITLTKLDGTAKGGVIFAVADQFGIPIRYIGVGEGIEDLRPFKADDF 491


>gi|84683623|ref|ZP_01011526.1| signal recognition particle-docking protein FtsY [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668366|gb|EAQ14833.1| signal recognition particle-docking protein FtsY [Rhodobacterales
           bacterium HTCC2654]
          Length = 453

 Score =  261 bits (668), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 190/275 (69%), Gaps = 1/275 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E LE+L+I SD+GV  A ++   +   R  + VSV+ +   +++ I +++ P
Sbjct: 180 RVLDDDMLESLEELMIASDMGVDTALRVSANIAEGRLGRKVSVEEIKEILAKEIARVMEP 239

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++KP    + +RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 240 VAKPLPL-YPNRPQVVLVVGVNGAGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQL 298

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W +R     + +  GSD A+LA++A  +A+A   D+L+IDTAGRL N   LMA + K+
Sbjct: 299 QVWGERAGVPVLTAPEGSDPASLAFDALTKARADGADLLMIDTAGRLQNREDLMAELAKI 358

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+K++D  APH+ L VLDATTGQNAL QV+ F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 359 VRVIKKIDDSAPHNTLLVLDATTGQNALSQVQTFQKLADVSGLVMTKLDGTAKGGVLVAL 418

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +P++ +GVGE I+DL PF   DF+  +TG 
Sbjct: 419 ADKFGLPIHAIGVGEQIDDLAPFDPDDFAKALTGL 453


>gi|86136625|ref|ZP_01055204.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           MED193]
 gi|85827499|gb|EAQ47695.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           MED193]
          Length = 355

 Score =  261 bits (668), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 190/275 (69%), Gaps = 1/275 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LE+LLI +D+GV  A ++   +   R  K +S + +   ++  + +++  
Sbjct: 79  RTLDDDMLEQLEELLIAADMGVDTALRVTANMAEGRLGKKLSAREIKELLAAEVARVMEH 138

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++KP    ++HRP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 139 VAKPMPL-YAHRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKNVVIAAGDTFRAAAVEQL 197

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD A+LAY+A  +AQ +  D+L+IDTAGRL N + LM  + K+
Sbjct: 198 QVWGDRAGVPVLTAPEGSDPASLAYDAMTRAQEEGADLLMIDTAGRLQNRADLMEELSKI 257

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           IRV+++ D  APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 258 IRVIRKKDETAPHNTLLVLDATTGQNALSQVETFQKLADVSGLVMTKLDGTAKGGVLVAL 317

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 318 ADKFALPIHAIGVGEQIDDLAPFDPEEFAAALTGL 352


>gi|56696224|ref|YP_166581.1| signal recognition particle-docking protein FtsY [Ruegeria pomeroyi
           DSS-3]
 gi|56677961|gb|AAV94627.1| signal recognition particle-docking protein FtsY [Ruegeria pomeroyi
           DSS-3]
          Length = 390

 Score =  261 bits (668), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 127/274 (46%), Positives = 190/274 (69%), Gaps = 1/274 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LE+LLI +D+GV  A ++   +   R  + +S Q +   +++ I +++ P
Sbjct: 114 RTLDDDMLEQLEELLIAADMGVDTALRVTANMAEGRIGRKLSTQEIKALLAQEITRIMEP 173

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    +  RP V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA++QL
Sbjct: 174 VARPMPL-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQL 232

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD A+LA++A  +AQ    D+L+IDTAGRL N + LM  + K+
Sbjct: 233 QVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEDGADLLLIDTAGRLQNRADLMEELAKI 292

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ D  APH+ L VLDATTGQNA+ QVE F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 293 VRVIRKKDDTAPHNTLLVLDATTGQNAISQVETFQKLADVSGLVMTKLDGTAKGGILVSL 352

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                +P++ +GVGE I+DL PF  +DF+A +TG
Sbjct: 353 ADRFGLPIHAIGVGEQIDDLAPFDPEDFAAALTG 386


>gi|77462389|ref|YP_351893.1| Signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides 2.4.1]
 gi|77386807|gb|ABA77992.1| signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides 2.4.1]
          Length = 393

 Score =  261 bits (668), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 127/277 (45%), Positives = 191/277 (68%), Gaps = 1/277 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E LE++LI++D+GV  A ++   +   RY + VS + +   ++  I ++L P
Sbjct: 118 RILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSAREIKEALAAEIARILEP 177

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    +  RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 178 VARPMPL-YPSRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQL 236

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W  R     + +  GSD A+LA++A  +AQA+  D+L+IDTAGRL N + LM  + K+
Sbjct: 237 QVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRADLMEELSKI 296

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+ L VLDATTGQNAL QVE+F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 297 VRVIRKKDPDAPHNTLLVLDATTGQNALNQVEIFRKLADVSGLVMTKLDGTAKGGVLVAL 356

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +P++ +GVGE I+DL PF  ++F+  + G  D
Sbjct: 357 ADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 393


>gi|326388652|ref|ZP_08210245.1| signal recognition particle-docking protein FtsY [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206903|gb|EGD57727.1| signal recognition particle-docking protein FtsY [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 308

 Score =  261 bits (667), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 138/305 (45%), Positives = 189/305 (61%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           S +W  +L  G   T  +L   +  ++ + RL D   +++ED LI SD+G   A +I E 
Sbjct: 3   SDTWSDRLLGGLRKTQERLSGNLAGLVGANRLSDEQLDDIEDALIASDLGPRAAARIRER 62

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + R+ K +    +   V+E I  +L P+++P +     RP VILV+GVNG GKTT I 
Sbjct: 63  LASGRFEKGLDEATLREAVAEEIAAILRPVARPLDIVAFPRPQVILVIGVNGSGKTTTIA 122

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+    +    VMLAAGDTFR+AAI QL++WA+R     V    G D A++ ++A KQA
Sbjct: 123 KLAHLFQELDYSVMLAAGDTFRAAAIGQLRVWAERLGVPIVSGAEGGDPASIVFDAVKQA 182

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DVLI+DTAGRL N   LM  + K+ RVL RL+P APH V+ VLDAT GQNAL+Q+
Sbjct: 183 TDAGTDVLIVDTAGRLQNKRELMDELAKIRRVLGRLNPEAPHDVVLVLDATNGQNALQQI 242

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG TGL+MTK+DGTARGG L+     + +P++ +GVGE I+DL PF     + V
Sbjct: 243 EIFREVAGVTGLVMTKLDGTARGGVLVAAAEQYGLPIHAIGVGEKIDDLRPFDPDLVAKV 302

Query: 310 ITGCL 314
           I G  
Sbjct: 303 IAGVF 307


>gi|163796739|ref|ZP_02190697.1| Signal recognition particle GTPase [alpha proteobacterium BAL199]
 gi|159177993|gb|EDP62540.1| Signal recognition particle GTPase [alpha proteobacterium BAL199]
          Length = 316

 Score =  261 bits (667), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 143/313 (45%), Positives = 208/313 (66%), Gaps = 1/313 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           MS +  + E   W  +L  G A +S +L +GIT +   RRLD    EELEDLLI +D+GV
Sbjct: 1   MSAEPASPERKGWFARLRDGLAKSSRRLADGITSLFVKRRLDAATLEELEDLLITADLGV 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGV 119
             A K+   L  +++ K+V+   V    +  I  +L P++ P    + +++P V+L+VGV
Sbjct: 61  ETAAKLTANLAREKFDKEVTGDEVRAAFAADIAAILAPVAVPLEPREIANKPFVVLMVGV 120

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+++ +DAG  V+LAAGDTFR+AA++QL++W +R+    +    G+DAA
Sbjct: 121 NGSGKTTTIGKLARQWTDAGKSVVLAAGDTFRAAAVEQLRVWGERSGCPVIEKPHGADAA 180

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ALA++A  +A+ +K DVLIIDTAGRL N + LM  + K+IRVLK+ DP APH+ + VLD 
Sbjct: 181 ALAFDALVEARERKADVLIIDTAGRLQNKAGLMEELAKVIRVLKKQDPEAPHATVLVLDG 240

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           T GQNA  QV+ F  +   TGLI+TK+DG+ARGG ++ +  +  +PV+ +GVGEGI+DL 
Sbjct: 241 TVGQNAHAQVKTFREMVNVTGLIVTKLDGSARGGIVVALAQSQGLPVHAVGVGEGIDDLH 300

Query: 300 PFVAKDFSAVITG 312
           PF    F+  + G
Sbjct: 301 PFEPDAFARSLMG 313


>gi|259416345|ref|ZP_05740265.1| cell division protein FtsY [Silicibacter sp. TrichCH4B]
 gi|259347784|gb|EEW59561.1| cell division protein FtsY [Silicibacter sp. TrichCH4B]
          Length = 388

 Score =  261 bits (667), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 127/277 (45%), Positives = 191/277 (68%), Gaps = 1/277 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E LE++LI SD+GV  A ++   +   R  + VS + +   +++ I +++ P
Sbjct: 111 RVLDDDMLESLEEMLIASDMGVDTALRVTANIAEGRMGRRVSGREIRELLAQEIARVMEP 170

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    +  +P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 171 VARPMPL-YPSKPQVVLVVGVNGSGKTTTIGKLASQFRAAGKTVVIAAGDTFRAAAVEQL 229

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD A+LA++A  +A+A   D+L+IDTAGRL N + LM  + K+
Sbjct: 230 QVWGDRAGVPVLTAPEGSDPASLAFDAMTKAEADGADLLMIDTAGRLQNRADLMEELAKI 289

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 290 VRVIRKKDPEAPHNTLLVLDATTGQNALSQVETFRQLADVSGLVMTKLDGTAKGGVLVAL 349

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +P++ +GVGE I+DL PF  ++F+A +TG  D
Sbjct: 350 ADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGLED 386


>gi|332560273|ref|ZP_08414595.1| signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides WS8N]
 gi|332277985|gb|EGJ23300.1| signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides WS8N]
          Length = 376

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/277 (45%), Positives = 191/277 (68%), Gaps = 1/277 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E LE++LI++D+GV  A ++   +   RY + VS + +   ++  I ++L P
Sbjct: 101 RILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSAREIKEALAAEIARILEP 160

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    +  RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 161 VARPMPL-YPSRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQL 219

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W  R     + +  GSD A+LA++A  +AQA+  D+L+IDTAGRL N + LM  + K+
Sbjct: 220 QVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRADLMEELSKI 279

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+ L VLDATTGQNAL QVE+F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 280 VRVIRKKDPDAPHNTLLVLDATTGQNALNQVEIFRKLADVSGLVMTKLDGTAKGGVLVAL 339

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +P++ +GVGE I+DL PF  ++F+  + G  D
Sbjct: 340 ADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 376


>gi|221638249|ref|YP_002524511.1| Signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides KD131]
 gi|221159030|gb|ACM00010.1| Signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides KD131]
          Length = 381

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/277 (45%), Positives = 191/277 (68%), Gaps = 1/277 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E LE++LI++D+GV  A ++   +   RY + VS + +   ++  I ++L P
Sbjct: 106 RILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSAREIKEALAAEIARILEP 165

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    +  RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 166 VARPMPL-YPSRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQL 224

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W  R     + +  GSD A+LA++A  +AQA+  D+L+IDTAGRL N + LM  + K+
Sbjct: 225 QVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRADLMEELSKI 284

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+ L VLDATTGQNAL QVE+F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 285 VRVIRKKDPDAPHNTLLVLDATTGQNALNQVEIFRKLADVSGLVMTKLDGTAKGGVLVAL 344

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +P++ +GVGE I+DL PF  ++F+  + G  D
Sbjct: 345 ADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 381


>gi|254463678|ref|ZP_05077089.1| signal recognition particle-docking protein FtsY [Rhodobacterales
           bacterium Y4I]
 gi|206684586|gb|EDZ45068.1| signal recognition particle-docking protein FtsY [Rhodobacterales
           bacterium Y4I]
          Length = 396

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 190/275 (69%), Gaps = 1/275 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LE+LLI +D+GV  A ++   L   R  K VS + +   +++ + +++ P
Sbjct: 120 RALDDDMLEQLEELLIAADMGVDTALRVTANLAEGRMGKKVSSREIKELLAQEVARIMEP 179

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++KP    ++ RP V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA++QL
Sbjct: 180 VAKPLPI-YAKRPQVVLVVGVNGSGKTTTIGKLASQFKGAGKKVVIAAGDTFRAAAVEQL 238

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD A+LA++A  +AQ    D+L+IDTAGRL N + LM  + K+
Sbjct: 239 QVWGDRAGVPVLTAPEGSDPASLAFDAMTKAQEDGADLLMIDTAGRLQNRADLMEELAKI 298

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ D  APH+ L VLDATTGQNAL QV  F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 299 VRVIRKKDETAPHNTLLVLDATTGQNALSQVGTFQQLADVSGLVMTKLDGTAKGGVLVAL 358

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 359 ADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 393


>gi|71065494|ref|YP_264221.1| signal recognition particle-docking protein FtsY [Psychrobacter
           arcticus 273-4]
 gi|71038479|gb|AAZ18787.1| signal recognition particle-docking protein FtsY [Psychrobacter
           arcticus 273-4]
          Length = 478

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 137/302 (45%), Positives = 195/302 (64%), Gaps = 4/302 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           SW  ++  G + +   L EG+  I I  + +DD + EE+ED L+ +DIGV    +I++ L
Sbjct: 171 SWFNRMKTGLSKSRKNLAEGMVGILIGGKEIDDELLEEVEDQLLVADIGVNATNRIIKSL 230

Query: 71  LTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
             +    D+     LY    +EL+  +L P   P   D S +P VILVVGVNGVGKTT I
Sbjct: 231 TEQTDRGDLIYAHSLYKALQTELVD-ILTPKVAPLIIDTSKQPFVILVVGVNGVGKTTTI 289

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K++   G  VMLAAGDTFR+AA +QL+IW +R +   V    GSD+A++ ++A + 
Sbjct: 290 GKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGERNNIPVVAQGHGSDSASVIFDAMQS 349

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK +DVLI DTAGRL N + LMA + K++RV+++ D  APH  + VLDA TGQNA+ Q
Sbjct: 350 AKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADSSAPHEGMIVLDAGTGQNAINQ 409

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           VE+F+ V   TG+ +TK+DGTA+GG +  I  T  +P+ ++GVGE I+DL  F  K F A
Sbjct: 410 VELFNKVVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDDLRAFSPKQFVA 469

Query: 309 VI 310
            +
Sbjct: 470 AL 471


>gi|146276684|ref|YP_001166843.1| signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554925|gb|ABP69538.1| signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 410

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/277 (45%), Positives = 191/277 (68%), Gaps = 1/277 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E LE++LI++D+GV  A ++   +   RY + VS + +   ++  I ++L P
Sbjct: 135 RILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSSREIKEALATEIARILEP 194

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    +  RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 195 VARPMPL-YPSRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQL 253

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W  R     + +  GSD A+LA++A  +AQA+  D+L+IDTAGRL N + LM  + K+
Sbjct: 254 QVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRTDLMEELSKI 313

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+ L VLDATTGQNAL QVE+F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 314 VRVIRKKDPDAPHNTLLVLDATTGQNALSQVEIFRKLADVSGLVMTKLDGTAKGGVLVAL 373

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +P++ +GVGE I+DL PF  ++F+  + G  D
Sbjct: 374 ADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 410


>gi|37527951|ref|NP_931296.1| cell division protein [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787387|emb|CAE16476.1| cell division protein [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 424

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/295 (43%), Positives = 193/295 (65%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + +ELE+ L+ +D+GV   +KI+  L  
Sbjct: 122 FFSRLKRSLVKTRQNLGSGFLSLFSGKKIDDDLFDELEEQLLIADVGVDTTRKIISSLTE 181

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++     LY  + E +  +L  ++KP + +    P+VIL+VGVNGVGKTT IGKL
Sbjct: 182 HASRKELKDAEALYAKLKEEMSGILTKVNKPLDIE-GKTPYVILMVGVNGVGKTTTIGKL 240

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D A++ ++A + A+A
Sbjct: 241 ARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQHTGADPASVIFDAIQSAKA 300

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VDVLI DTAGRL N S LM  + K++RV+K+LD +APH ++ +LDA+TGQNA+ Q ++
Sbjct: 301 KSVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEIMLILDASTGQNAISQAKL 360

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A DF
Sbjct: 361 FHEAVGLTGISLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADDF 415


>gi|119473191|ref|ZP_01614888.1| Cell division transporter substrate-binding protein FtsY
           [Alteromonadales bacterium TW-7]
 gi|119444555|gb|EAW25870.1| Cell division transporter substrate-binding protein FtsY
           [Alteromonadales bacterium TW-7]
          Length = 750

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T + +  G + I S +++DD + EELE  L+ +D+GV    K+++ L  
Sbjct: 444 FFSRLKKGLLKTRVNIGAGFSSIFSGKKIDDDLFEELETQLLTADLGVDTTMKLIDRLTD 503

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY++  + +  ML    +P       +P VIL+VGVNGVGKTT IGKL
Sbjct: 504 GANRKQLKDGDALYELMKQEMAAMLKTAEQPLTIPAEKKPFVILMVGVNGVGKTTTIGKL 563

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+  + G  VMLAAGDTFR+AA++QL++W +R S   +    G+D+A++ ++AF+ A+A
Sbjct: 564 AKQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVVFDAFQAAKA 623

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N   LM  + K+ RV+K++DP APH V+  +DA TGQNA+ QV +
Sbjct: 624 RNVDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVNL 683

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ ++K+DGTA+GG +  +     IP+ ++GVGEGI+DL  F + DF
Sbjct: 684 FNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIDDLRSFKSDDF 738


>gi|99081783|ref|YP_613937.1| signal recognition particle-docking protein FtsY [Ruegeria sp.
           TM1040]
 gi|99038063|gb|ABF64675.1| signal recognition particle-docking protein FtsY [Ruegeria sp.
           TM1040]
          Length = 386

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/284 (45%), Positives = 193/284 (67%), Gaps = 2/284 (0%)

Query: 31  GITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           G T     RR LDD + E LE++LI SD+GV  A ++   +   R  + VS + +   ++
Sbjct: 100 GRTKPSEPRRVLDDDMLESLEEMLIASDMGVDTALRVTANIAEGRMGRRVSGREIRELLA 159

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
             I +++ P+++P    +  +P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDT
Sbjct: 160 AEIARVMEPVARPMPL-YPSKPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDT 218

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AA++QL++W DR     + +  GSD A+LA++A  +A+A   D+L+IDTAGRL N +
Sbjct: 219 FRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMTKAEADGADLLMIDTAGRLQNRA 278

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + K++RV+++ DP+APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+DGT
Sbjct: 279 DLMEELAKIVRVIRKKDPNAPHNTLLVLDATTGQNALSQVETFRQLADVSGLVMTKLDGT 338

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           A+GG L+ +     +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 339 AKGGVLVALADKFGLPIHAIGVGEQIDDLSPFDPEEFAAALTGL 382


>gi|159045265|ref|YP_001534059.1| hypothetical protein Dshi_2725 [Dinoroseobacter shibae DFL 12]
 gi|157913025|gb|ABV94458.1| hypothetical protein Dshi_2725 [Dinoroseobacter shibae DFL 12]
          Length = 499

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 127/274 (46%), Positives = 189/274 (68%), Gaps = 1/274 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R +DD + E LE++LI +D+GV  A ++   +   R  + VS   +   +++ I +++ P
Sbjct: 224 RVMDDAMLESLEEVLIAADMGVDTALRVSANIAEGRMGRKVSTNEIKRILADEIARIMEP 283

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++KP    +  RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 284 VAKPLPI-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKSVVIAAGDTFRAAAVEQL 342

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD A+LA++A KQAQA   D+L+IDTAGRL N + LM  + K+
Sbjct: 343 QVWGDRAGVPVLTAPEGSDPASLAFDAIKQAQASGADLLMIDTAGRLQNRADLMEELAKI 402

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV++++D  APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 403 VRVIRKVDETAPHNTLLVLDATTGQNALSQVETFRKLADVSGLVMTKLDGTAKGGVLVAL 462

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                +P++ +GVGE I+DL PF  ++F+  +TG
Sbjct: 463 ADKFGLPIHAIGVGEQIDDLAPFDPEEFADALTG 496


>gi|197336427|ref|YP_002157238.1| cell division protein FtsY [Vibrio fischeri MJ11]
 gi|197317917|gb|ACH67364.1| cell division protein FtsY [Vibrio fischeri MJ11]
          Length = 412

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 132/296 (44%), Positives = 198/296 (66%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +    T   +  G   + S +++DD + EELE+ L+ +D+G+    +I++ L 
Sbjct: 108 SFFARLKRSLQRTKENIGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTTVRIIDSLT 167

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   +D+     LY +  E + ++L  + +P   D  + PHVIL+VGVNGVGKTT IGK
Sbjct: 168 EKASKQDLKDGEALYGLLKEEMAEILAKVEQPLEIDEKNMPHVILMVGVNGVGKTTTIGK 227

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+  + G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ Y+A + A+
Sbjct: 228 LAKQFQNEGKSVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASVIYDAIEAAR 287

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+KVDV+I DTAGRL N S LM  + K++RV+K++DP APH ++  LDA TGQNA+ Q +
Sbjct: 288 ARKVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDPSAPHEIMLTLDAGTGQNAISQAK 347

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ F+GVGEGI+DL PFVA+DF
Sbjct: 348 LFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRFIGVGEGIDDLRPFVAQDF 403


>gi|149914432|ref|ZP_01902963.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           AzwK-3b]
 gi|149811951|gb|EDM71784.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           AzwK-3b]
          Length = 439

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 133/294 (45%), Positives = 196/294 (66%), Gaps = 3/294 (1%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           G     L  KEG T  +  R LDD + E+LE+LLI +D+GV  A ++   +   R  + +
Sbjct: 146 GLLGRLLGRKEGKT--VVRRVLDDDMLEQLEELLISADMGVDTALRVTANMAEGRMGRKL 203

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           S Q +   +++ I +++ P+++P    +   P V+LVVGVNG GKTT IGKL+ +   AG
Sbjct: 204 SGQEIKELLAQEITRIMEPVARPMPI-YPKTPQVVLVVGVNGSGKTTTIGKLASQFKAAG 262

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V++AAGDTFR+AA++QL+IW  R     + +  GSD A+LA++A ++AQA   D+L+I
Sbjct: 263 KSVVIAAGDTFRAAAVEQLQIWGGRAGVPVLTAPEGSDPASLAFDAIEKAQADGADLLMI 322

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL N + LM  + K++RV+++ DP APH+ L VLDATTGQNAL QVE F  +A  +
Sbjct: 323 DTAGRLQNRADLMEELAKIVRVIRKKDPGAPHNTLLVLDATTGQNALSQVETFQKLADVS 382

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           GL+MTK+DGTA+GG L+ +     +P++ +GVGE I+DL PF  +DF+A + G 
Sbjct: 383 GLVMTKLDGTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEDFAAALIGL 436


>gi|114771713|ref|ZP_01449117.1| signal recognition particle-docking protein FtsY [alpha
           proteobacterium HTCC2255]
 gi|114547785|gb|EAU50675.1| signal recognition particle-docking protein FtsY [alpha
           proteobacterium HTCC2255]
          Length = 502

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 126/273 (46%), Positives = 185/273 (67%), Gaps = 1/273 (0%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
            DD + E LE+LLI +D+GV  + ++   +      K VSV  V   +   + ++L P++
Sbjct: 229 FDDNMLESLEELLISADMGVDTSLRVSANMADGNLGKKVSVNEVKILLGNEVARILEPVA 288

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           KP    +S +P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL++
Sbjct: 289 KPMPL-YSQKPQVVLVVGVNGSGKTTTIGKLASQFRSAGKSVVIAAGDTFRAAAVEQLQV 347

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           W +R     + +  GSD A+LA++A  + +   VD+L+IDTAGRL N   LM  + K++R
Sbjct: 348 WGERAGVPVLTAPEGSDPASLAFDAMNKCKNDNVDLLMIDTAGRLQNRKDLMEELDKIVR 407

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V+++ DP APH+ L VLDATTGQNA+RQVE+F  V+  TGL+MTK+DGTA+GG L+ +  
Sbjct: 408 VIQKNDPSAPHNTLLVLDATTGQNAIRQVEVFQEVSKVTGLVMTKLDGTAKGGVLVALAD 467

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
              +P++ +GVGE I+DL+ F  KDF+  +TG 
Sbjct: 468 KFGLPIHAIGVGEQIDDLQAFDPKDFAKALTGS 500


>gi|126461266|ref|YP_001042380.1| signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126102930|gb|ABN75608.1| signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 379

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 127/277 (45%), Positives = 190/277 (68%), Gaps = 1/277 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E LE++LI++D+GV  A ++   +   RY + VS + +   ++  I ++L P
Sbjct: 104 RILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSAREIKEALAAEIARILEP 163

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    +  RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 164 VARPMPL-YPSRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQL 222

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W  R     + +  GSD A+LA++A  +AQA+  D+L+IDTAGRL N + LM  + K+
Sbjct: 223 QVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRADLMEELSKI 282

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+ + DP APH+ L VLDATTGQNAL QVE+F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 283 VRVIHKKDPDAPHNTLLVLDATTGQNALNQVEIFRKLADVSGLVMTKLDGTAKGGVLVAL 342

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +P++ +GVGE I+DL PF  ++F+  + G  D
Sbjct: 343 ADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 379


>gi|296284752|ref|ZP_06862750.1| signal recognition particle-docking protein FtsY [Citromicrobium
           bathyomarinum JL354]
          Length = 313

 Score =  259 bits (662), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 137/301 (45%), Positives = 190/301 (63%), Gaps = 3/301 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSR---RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +L  GF  TS +L E I  +  +R   RLDD   +E+ED LI SD+G   A ++ E L  
Sbjct: 12  RLLGGFRKTSDRLSENIAPVSQTRGNTRLDDATLDEIEDALIMSDLGPEAAGRVREALRE 71

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +R+  +++ +++   V++ I  +L P++KP       RP VILV+GVNG GKTT I KL+
Sbjct: 72  QRFGAEITERQLREAVADEIAAILRPVAKPLEVTAFPRPQVILVIGVNGSGKTTTIAKLA 131

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
               +   +VMLAAGDTFR+AAI QL+ WADR     V    G D A++ ++A K+   +
Sbjct: 132 HLFMEDDYEVMLAAGDTFRAAAIGQLQTWADRVGVPLVRGPEGGDPASIVFDAVKRGTDE 191

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D LI+DTAGRL N   LM  + K+ +VL RL+P APH V+ VLDAT GQNAL Q+++F
Sbjct: 192 GTDALIVDTAGRLQNKRELMDELAKIRKVLGRLNPEAPHDVVLVLDATNGQNALSQIDVF 251

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             VAG TGLIMTK+DGTARGG L+     + +P++ +GVGE ++DL PF     + VI G
Sbjct: 252 QEVAGVTGLIMTKLDGTARGGILVAAAQKYGLPIHAIGVGEQLDDLRPFDPDLVARVIAG 311

Query: 313 C 313
            
Sbjct: 312 V 312


>gi|329891229|ref|ZP_08269572.1| signal recognition particle-docking protein FtsY [Brevundimonas
           diminuta ATCC 11568]
 gi|328846530|gb|EGF96094.1| signal recognition particle-docking protein FtsY [Brevundimonas
           diminuta ATCC 11568]
          Length = 311

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 193/303 (63%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W ++L++G + +S ++ + +        L +   E LE+ LI SD+G A + +IVE    
Sbjct: 9   WFQRLSEGLSRSSKQMTDQVVSTFVKEPLSEEALERLEEHLIESDLGPAASARIVERFRE 68

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            R+ K    + +   ++E +   L P    F+     +P+V+L VGVNG GKTT +GK++
Sbjct: 69  LRFGKTSDEREIKQALAEAVAAELTPRQATFDPLSGPKPYVVLFVGVNGSGKTTTLGKIA 128

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             ++  G KVM+ AGDTFR+AA +QLK+WADR  A F     G+DAA LA++AF +A+ +
Sbjct: 129 SDLTAKGAKVMIVAGDTFRAAAREQLKVWADRAGAHFESRRDGADAAGLAFDAFAKAKEE 188

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV++IDTAGRL N S LM  + K++RVLK++DP APH  L VLDAT G+NAL Q ++F
Sbjct: 189 GFDVVLIDTAGRLQNKSTLMDELLKIVRVLKKVDPDAPHETLLVLDATVGRNALEQEKIF 248

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              A  +G++MTK+DGTARGG L+P+      P+  +GVGEG+ DL+PF A+ FS  + G
Sbjct: 249 GRTAYVSGVVMTKLDGTARGGVLVPVAQASDAPIKLIGVGEGVEDLQPFDARAFSRSLVG 308

Query: 313 CLD 315
             D
Sbjct: 309 LED 311


>gi|294677911|ref|YP_003578526.1| cell division protein FtsY [Rhodobacter capsulatus SB 1003]
 gi|294476731|gb|ADE86119.1| cell division protein FtsY [Rhodobacter capsulatus SB 1003]
          Length = 479

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 125/278 (44%), Positives = 191/278 (68%), Gaps = 1/278 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           +  R LDD + E +EDLLI +D+GV  A ++   L   R  + +SV  +   ++  + ++
Sbjct: 200 VPRRVLDDAMLESIEDLLIAADMGVDTALRVTANLAEGRMGRKLSVPELKDILAAEVARI 259

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + P+++P    ++ RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA+
Sbjct: 260 MEPVARPMPL-YARRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVIIAAGDTFRAAAV 318

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QLK+W DR     + +  G+D A+ AY+A  +A A+ VD+L+IDTAGRL N + LM  +
Sbjct: 319 EQLKVWGDRAGVPVMTAPEGADPASFAYDALTRAAAEGVDLLMIDTAGRLQNRADLMEEL 378

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K++RV++++D  APH+ L VLDATTGQNAL QVE+F  ++  +GL+MTK+DGTA+GG L
Sbjct: 379 AKIVRVIRKIDESAPHNTLLVLDATTGQNALAQVEVFRKISDVSGLVMTKLDGTAKGGVL 438

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           + +     +P++ +GVGE I+DL PF  ++F+A + G 
Sbjct: 439 VALADKFGLPIHAIGVGEQIDDLSPFDPEEFAAALVGI 476


>gi|258543517|ref|YP_003188950.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-01]
 gi|256634595|dbj|BAI00571.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-01]
 gi|256637651|dbj|BAI03620.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-03]
 gi|256640705|dbj|BAI06667.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-07]
 gi|256643760|dbj|BAI09715.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-22]
 gi|256646815|dbj|BAI12763.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-26]
 gi|256649868|dbj|BAI15809.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-32]
 gi|256652858|dbj|BAI18792.1| cell division protein FtsY [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655912|dbj|BAI21839.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-12]
          Length = 309

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 146/306 (47%), Positives = 215/306 (70%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +L +  +L +G + ++ KL  GIT I + R+LDD   EELEDLLI +D+G AVA++I+E 
Sbjct: 2   ALGFFSRLKQGLSRSTQKLGGGITGIFTKRKLDDEALEELEDLLITADMGPAVAERIIES 61

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             + R+  +V+ + +   +++ I  +L P++KPF  D +H+PHV+LVVGVNGVGKTT IG
Sbjct: 62  FRSSRFGTEVTDEEIRNTLADEIATILEPVAKPFEPDPAHKPHVVLVVGVNGVGKTTTIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+++  ++ G KVM+ AGDTFR+AA++QL+IW +RT    +    G+DAA LA+EA K+ 
Sbjct: 122 KMARFFTEEGKKVMMVAGDTFRAAAVEQLQIWGERTGCPVIAGPPGADAAGLAFEALKRG 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D+L +DTAGRLHN S LM  + K+IRV+++ D  APHSVL VLDATTGQNA+ QV
Sbjct: 182 KAEGADLLFVDTAGRLHNKSALMEELAKIIRVMRKFDETAPHSVLLVLDATTGQNAVEQV 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  +   TGL++TK+DG+ARGG ++ +     +PV+ +GVGE   DL PF A D++  
Sbjct: 242 RVFRELVNVTGLVVTKLDGSARGGIVVALADQFGLPVHAVGVGEQAEDLRPFSAVDYARG 301

Query: 310 ITGCLD 315
           + G  D
Sbjct: 302 LVGVAD 307


>gi|126728988|ref|ZP_01744803.1| Signal recognition particle-docking protein FtsY [Sagittula
           stellata E-37]
 gi|126710918|gb|EBA09969.1| Signal recognition particle-docking protein FtsY [Sagittula
           stellata E-37]
          Length = 357

 Score =  259 bits (661), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 130/284 (45%), Positives = 193/284 (67%), Gaps = 2/284 (0%)

Query: 31  GITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           G  D    RR LDD + E LE+LLI SD+GV  A ++   +   R  + VS + +   ++
Sbjct: 73  GQPDSAEPRRVLDDDMLESLEELLIASDMGVDTALRVTSNIAEGRMGRRVSAREIKELLA 132

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           E I +++  +++P    +  +P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDT
Sbjct: 133 EEIARVMESVARPLPI-YPKKPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDT 191

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AA++QL++W +R     + +  GSD A+LA++A  +AQA+  D+L+IDTAGRL N +
Sbjct: 192 FRAAAVEQLQVWGERAGVPVLTAPEGSDPASLAFDAMGKAQAEGADLLMIDTAGRLQNRA 251

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + K++RV+++ DP APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+DGT
Sbjct: 252 DLMEELAKIVRVIRKKDPDAPHNTLLVLDATTGQNALIQVEAFRQLADVSGLVMTKLDGT 311

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           A+GG L+ +     +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 312 AKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 355


>gi|126740023|ref|ZP_01755713.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           SK209-2-6]
 gi|126718842|gb|EBA15554.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           SK209-2-6]
          Length = 378

 Score =  258 bits (660), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 125/275 (45%), Positives = 191/275 (69%), Gaps = 1/275 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LE+LLI +D+GV  A ++   +   R  K +S + +   ++  + +++  
Sbjct: 102 RVLDDDMLEQLEELLIAADMGVDTALRVTSNMAEGRLGKKLSAREIKELLAAEVARVMET 161

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++KP    ++HRP V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA++QL
Sbjct: 162 VAKPMPI-YAHRPQVVLVVGVNGSGKTTTIGKLASQFKGAGKKVVIAAGDTFRAAAVEQL 220

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W +R     + +  GSD A+LA++A  +AQ +  D+L+IDTAGRL N + LM  + K+
Sbjct: 221 QVWGERAGVPVLTAPEGSDPASLAFDAMTKAQEEGADLLMIDTAGRLQNRADLMEELAKI 280

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ D  APH+ L VLDATTGQNAL QVE F  ++  +GL+MTK+DGTA+GG L+ +
Sbjct: 281 VRVIRKKDETAPHNTLLVLDATTGQNALSQVETFRKISDVSGLVMTKLDGTAKGGVLVAL 340

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 341 ADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 375


>gi|59713060|ref|YP_205836.1| fused Signal recognition particle (SRP) receptor: membrane binding
           protein/ protein [Vibrio fischeri ES114]
 gi|59481161|gb|AAW86948.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Vibrio fischeri ES114]
          Length = 412

 Score =  258 bits (660), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 131/296 (44%), Positives = 198/296 (66%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +    T   +  G   + S +++DD + EELE+ L+ +D+G+    +I++ L 
Sbjct: 108 SFFARLKRSLQRTKENIGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTTVRIIDSLT 167

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   +D+     LY +  E + ++L  + +P   +  + PHVIL+VGVNGVGKTT IGK
Sbjct: 168 EKASKQDLKDGEALYGLLKEEMAEILAKVEQPLEINEKNMPHVILMVGVNGVGKTTTIGK 227

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+  + G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ Y+A + A+
Sbjct: 228 LAKQFQNEGKSVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASVIYDAIEAAR 287

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+KVDV+I DTAGRL N S LM  + K++RV+K++DP APH ++  LDA TGQNA+ Q +
Sbjct: 288 ARKVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDPSAPHEIMLTLDAGTGQNAISQAK 347

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ F+GVGEGI+DL PFVA+DF
Sbjct: 348 LFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRFIGVGEGIDDLRPFVAQDF 403


>gi|255319577|ref|ZP_05360790.1| signal recognition particle-docking protein FtsY [Acinetobacter
           radioresistens SK82]
 gi|255303375|gb|EET82579.1| signal recognition particle-docking protein FtsY [Acinetobacter
           radioresistens SK82]
          Length = 366

 Score =  258 bits (660), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 139/301 (46%), Positives = 198/301 (65%), Gaps = 2/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S+  ++ +G   T   L +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I+  L
Sbjct: 61  SFFSRMKQGLTKTRKNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGVEATKTIINNL 120

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +    D+     LY  + E +  +L P  KP + D +  P+VILVVGVNGVGKTT IG
Sbjct: 121 TERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKNPYVILVVGVNGVGKTTTIG 180

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++AF+ A
Sbjct: 181 KLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVQVVAQGHGADSASVIFDAFESA 240

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQNA+ QV
Sbjct: 241 RAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQV 300

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           +MF    G TGL +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF AK F A 
Sbjct: 301 QMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKAFVAA 360

Query: 310 I 310
           +
Sbjct: 361 L 361


>gi|315497314|ref|YP_004086118.1| signal recognition particle-docking protein ftsy [Asticcacaulis
           excentricus CB 48]
 gi|315415326|gb|ADU11967.1| signal recognition particle-docking protein FtsY [Asticcacaulis
           excentricus CB 48]
          Length = 313

 Score =  258 bits (660), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 137/313 (43%), Positives = 201/313 (64%), Gaps = 14/313 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           W  +LT+G + TS +L E +T + ++++ LD    E LED+LI SD G  +A  I  ++ 
Sbjct: 8   WFSRLTQGLSKTSQQLTEQVTSVFVANKTLDAAAVEALEDMLIESDFGPHIAASIAGKMA 67

Query: 72  TKRYAK--DVSVQRVLYDVSELIHK----MLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            K++A   D +V+  L +      K       PLS P       +P+++L VGVNG GKT
Sbjct: 68  AKKFASTDDYAVKEALAEAIAEELKGREDRFDPLSGP-------KPYIVLFVGVNGSGKT 120

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GK++  ++  G KV++ AGDTFR+AA++QLK+WA+R  ADF+  + G+DAA LAY+A
Sbjct: 121 TTLGKIAAALTTKGAKVLIVAGDTFRAAAVEQLKVWAERAKADFMGRKTGADAAGLAYDA 180

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +A+ +  DV++IDTAGRL N   LM  + K++RV+K++DP APH  L VLDAT G+NA
Sbjct: 181 TVRAKEEGYDVVLIDTAGRLQNKQQLMDELLKIVRVIKKVDPDAPHETLLVLDATVGRNA 240

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q ++F   A  +GL+MTK+DGTARGG L+PI      P+  +GVGE I+DL+PF A  
Sbjct: 241 LSQEQIFGRQAFVSGLVMTKLDGTARGGILVPIAKASDAPIKLIGVGEDIDDLQPFRASA 300

Query: 306 FSAVITGCLDYGE 318
           F+  + G    G+
Sbjct: 301 FARSMVGLEPLGD 313


>gi|262370504|ref|ZP_06063830.1| cell division protein [Acinetobacter johnsonii SH046]
 gi|262314846|gb|EEY95887.1| cell division protein [Acinetobacter johnsonii SH046]
          Length = 368

 Score =  258 bits (659), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 144/311 (46%), Positives = 201/311 (64%), Gaps = 2/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
           S +  ASE   +  ++  G   T   L +G+ +I I  + +DD + EE+E+ L+ +DIGV
Sbjct: 53  SEETEASERGGFFSRMKVGLTKTRKNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGV 112

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VILVVGV
Sbjct: 113 DATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKTPYVILVVGV 172

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R +   V    G+D+A
Sbjct: 173 NGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNNIAVVAQGHGADSA 232

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++AF+ A+AK VDVLI DTAGRLHN   LM  + K+ RV++++D  APH V+ V+DA
Sbjct: 233 SVIFDAFESARAKGVDVLIADTAGRLHNKGHLMQELTKVKRVMQKIDATAPHEVMLVVDA 292

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ QVEMF    G TGL +TK+DGTA+GG L  I     +P+ F+GVGE I+DL 
Sbjct: 293 GTGQNAINQVEMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLR 352

Query: 300 PFVAKDFSAVI 310
           PF AK F A +
Sbjct: 353 PFSAKSFVAAL 363


>gi|332975302|gb|EGK12201.1| cell division protein FtsY [Psychrobacter sp. 1501(2011)]
          Length = 407

 Score =  258 bits (659), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 135/301 (44%), Positives = 193/301 (64%), Gaps = 4/301 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           W  ++  G   +   L EG+ +I I  + +DD + EE+ED L+ +DIGV    KI++ L 
Sbjct: 103 WFSRMKSGLTKSRKNLAEGVANILIGGKEIDDELLEEVEDQLLVADIGVEATDKIIKSLT 162

Query: 72  TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +    D+     LY     EL+  +L P   P   D S +P VILVVGVNGVGKTT IG
Sbjct: 163 EQTARGDLIYSHSLYKALQKELVE-ILEPKVAPLIIDTSKKPFVILVVGVNGVGKTTTIG 221

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K++   G  VMLAAGDTFR+AA +QL+IW +R +   V    G+D+A++ ++A + A
Sbjct: 222 KLAKRLQAEGKSVMLAAGDTFRAAATEQLQIWGERNNIPVVAQGHGADSASVVFDAMQSA 281

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +AK +DVLI DTAGRL N + LMA + K++R++++ DP APH  + VLDA TGQNA+ QV
Sbjct: 282 KAKNIDVLIADTAGRLQNKTHLMAELEKVVRIMRKSDPTAPHEGMIVLDAGTGQNAINQV 341

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F+     TG+ +TK+DGTA+GG +  I  T  IP+ ++GVGE I+DL  F  K F A 
Sbjct: 342 KIFNDAVPLTGITITKLDGTAKGGVVFNIANTTDIPIRYIGVGESIDDLRAFSPKQFVAA 401

Query: 310 I 310
           +
Sbjct: 402 L 402


>gi|148652808|ref|YP_001279901.1| signal recognition particle-docking protein FtsY [Psychrobacter sp.
           PRwf-1]
 gi|148571892|gb|ABQ93951.1| signal recognition particle-docking protein FtsY [Psychrobacter sp.
           PRwf-1]
          Length = 397

 Score =  258 bits (659), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 136/310 (43%), Positives = 198/310 (63%), Gaps = 4/310 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           QK   +   W  ++  G + +   L EG+ +I I  + +DD + EE+ED L+ +DIGV  
Sbjct: 84  QKEDKKRGGWFSRMKSGLSKSRKNLAEGVANILIGGKEIDDELLEEVEDQLLVADIGVEA 143

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             KI++ L  +    D+     LY     EL+ ++L P   P   D S +P VILVVGVN
Sbjct: 144 TDKIIKSLTEQTARGDLIYSHSLYKALQKELV-EILEPKVAPLIIDTSKKPFVILVVGVN 202

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+K++   G  VMLAAGDTFR+AA +QL++W +R +   V    G+D+A+
Sbjct: 203 GVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQVWGERNNIPVVAQGHGADSAS 262

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+AK +DVLI DTAGRL N + LMA + K++R++++ DP APH  + VLDA 
Sbjct: 263 VVFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRIMRKSDPTAPHEGMIVLDAG 322

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ QV++F+     TG+ +TK+DGTA+GG +  I  T  IP+ ++GVGE I+DL  
Sbjct: 323 TGQNAINQVKIFNDAVPLTGITITKLDGTAKGGVVFNIANTTDIPIRYIGVGESIDDLRA 382

Query: 301 FVAKDFSAVI 310
           F  K F A +
Sbjct: 383 FSPKQFVAAL 392


>gi|85708148|ref|ZP_01039214.1| signal recognition particle GTPase [Erythrobacter sp. NAP1]
 gi|85689682|gb|EAQ29685.1| signal recognition particle GTPase [Erythrobacter sp. NAP1]
          Length = 304

 Score =  258 bits (659), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 138/304 (45%), Positives = 191/304 (62%), Gaps = 2/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           S SW  +L  GF  TS +L   +T + +  RLD+   +++ED LI SD+G A A +I  +
Sbjct: 2   STSWSDRLLGGFRKTSERLGANLTGVAT--RLDEATLDDVEDALIISDLGPAAAARIRAK 59

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  K +  +++ + +   V+E I ++L P++KP       RP VILV+GVNG GKTT I 
Sbjct: 60  LKEKSFGLEITQRELKEAVAEEIAEILRPVAKPLEITAFPRPQVILVIGVNGSGKTTTIA 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+   ++    V+LAAGDTFR+AAI QL  WA+R   D V    G D A++ ++A KQA
Sbjct: 120 KLAHLFTEDDYGVLLAAGDTFRAAAIGQLATWAERAGVDLVRGPEGGDPASIVFDAVKQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
               +D L++DTAGRL N   LM  + K+ RVL RL+  APH V+ VLDAT GQNAL Q+
Sbjct: 180 TDTGIDALVVDTAGRLQNKKELMEELAKIRRVLGRLNEEAPHDVVLVLDATNGQNALSQI 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F  VAG TGLIMTK+DGTARGG L+     + +P++ +GVGE + DL PF     + V
Sbjct: 240 DVFQEVAGVTGLIMTKLDGTARGGVLVAAAEQYGLPIHAIGVGEKMEDLRPFDPDLVARV 299

Query: 310 ITGC 313
           I G 
Sbjct: 300 IAGV 303


>gi|300114349|ref|YP_003760924.1| signal recognition particle-docking protein FtsY [Nitrosococcus
           watsonii C-113]
 gi|299540286|gb|ADJ28603.1| signal recognition particle-docking protein FtsY [Nitrosococcus
           watsonii C-113]
          Length = 352

 Score =  258 bits (659), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 196/302 (64%), Gaps = 2/302 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65
           A E  S  ++L +    T   L  GI D++  ++ +DD + EE+E  L+ +D+GV   Q 
Sbjct: 27  AREKQSLFKRLRERLGRTRNNLTGGIADLMLGKKSIDDELLEEIEAQLLIADVGVEATQA 86

Query: 66  IVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I+++L  +   K +   + ++  + E +  +L P ++P     + +P VIL+VGVNGVGK
Sbjct: 87  IIKDLTVRTSRKQLQDAEALMAALRENMQALLTPCNQPLIIPAAIQPFVILMVGVNGVGK 146

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++
Sbjct: 147 TTTIGKLAKKFQAEGRSVMLAAGDTFRAAAVEQLQVWGERNQVPVMAQHGGADSASVIFD 206

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + AQA+ +DVLI DTAGRLH    LM  + K+ RV+ +++PHAPH ++  +DA TGQN
Sbjct: 207 AVQSAQARGIDVLIADTAGRLHTQINLMEELKKIKRVMGKVNPHAPHEIMLTVDAGTGQN 266

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + FH   G TG+I+TK+DGTA+GG +  I     IP+ F+GVGEGI+DL PF A+
Sbjct: 267 ALNQAKQFHEAVGLTGIILTKLDGTAKGGVIFAIAKKMGIPIRFIGVGEGIDDLRPFNAE 326

Query: 305 DF 306
           +F
Sbjct: 327 EF 328


>gi|332995325|gb|AEF05380.1| signal recognition particle GTPase [Alteromonas sp. SN2]
          Length = 530

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/316 (41%), Positives = 197/316 (62%), Gaps = 6/316 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E  S   +L +  + T   L  G+  +   + +DD + E+LE  L+ +D+G+   QKI+ 
Sbjct: 215 EKKSLFSRLKESLSRTKANLGSGLVSLFKGKAIDDELYEDLETQLLVADVGMDTTQKIIT 274

Query: 69  ELLTKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGV 122
            L      KD+     L D+     + ++ K+  PLS   N   S   P VIL+VGVNGV
Sbjct: 275 HLTDSASRKDLKDAEALLDILKQQMAGMLSKVNEPLSDAINAHNSDEGPFVILMVGVNGV 334

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R S   +    G+D+A++ 
Sbjct: 335 GKTTTIGKLAKQFQQQGKKVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVL 394

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+++K D+LI DTAGRL N   LM  + K++RV+K+L+P+APH V+  LDA TG
Sbjct: 395 YDALEAAKSRKTDILIADTAGRLQNKDNLMEELKKVVRVMKKLNPNAPHEVMLTLDAGTG 454

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI+DL  F 
Sbjct: 455 QNAISQAKLFNQAVGLTGITLTKLDGTAKGGVIFSIADKFGIPIRYIGVGEGIDDLRQFD 514

Query: 303 AKDFSAVITGCLDYGE 318
            ++F   +   +D GE
Sbjct: 515 GQEFIDALFSEIDSGE 530


>gi|330831384|ref|YP_004394336.1| ABC transporter permease [Aeromonas veronii B565]
 gi|328806520|gb|AEB51719.1| ABC transporter permease component [Aeromonas veronii B565]
          Length = 557

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   +  G   +   +++DD + EELE  L+ +D+GV    +I+E L+ 
Sbjct: 254 FFARLKRSLVRTKENIGSGFFGLFRGKKIDDELFEELETQLLTADLGVDTTTRIIEGLVQ 313

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + +ML  + +P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 314 HADRKQLKDAEALYGLLKQDMGEMLAKVEQPLVIDTSKKPYVILMVGVNGVGKTTTIGKL 373

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ Y+A + A++
Sbjct: 374 AKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIYDAIEAARS 433

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVLI DTAGRL N S LM  + K++RV+K+LD  APH ++  LDA TGQNAL Q ++
Sbjct: 434 RGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEIMLTLDAGTGQNALSQAKL 493

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F    G TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PFVA DF
Sbjct: 494 FSEAVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDF 548


>gi|83950639|ref|ZP_00959372.1| signal recognition particle-docking protein FtsY [Roseovarius
           nubinhibens ISM]
 gi|83838538|gb|EAP77834.1| signal recognition particle-docking protein FtsY [Roseovarius
           nubinhibens ISM]
          Length = 489

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/274 (45%), Positives = 188/274 (68%), Gaps = 1/274 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LE+LLI +D+GV  A ++   +   R  K +S Q +   ++  I +++ P
Sbjct: 214 RALDDDMLEQLEELLITADMGVDTALRVTANMAEGRMGKRLSTQEIKELLAAEIARIMEP 273

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    ++  P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 274 VARPMPL-YTKSPQVVLVVGVNGSGKTTTIGKLASQFKAAGKSVVIAAGDTFRAAAVEQL 332

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD A+LA++A  +AQ    D+L+IDTAGRL N + LM  + K+
Sbjct: 333 QVWGDRAGVPVLTAPEGSDPASLAFDAMDRAQRDGADLLMIDTAGRLQNRADLMEELAKI 392

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ D  APH+ L VLDATTGQNAL QV+ F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 393 VRVIRKKDETAPHNTLLVLDATTGQNALSQVKTFQELADVSGLVMTKLDGTAKGGVLVAL 452

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                +P++ +GVGE I+DL PF  +DF+A +TG
Sbjct: 453 ADKFGLPIHAIGVGEQIDDLAPFDPEDFAAALTG 486


>gi|332531762|ref|ZP_08407647.1| signal recognition particle receptor protein FtsY
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038738|gb|EGI75180.1| signal recognition particle receptor protein FtsY
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 432

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 189/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T + +  G   I S +++DD + E+LE  L+ +D+GV    K+++ L  
Sbjct: 126 FFSRLKKGLLKTRVNIGSGFASIFSGKKIDDELFEDLETQLLTADLGVDTTMKLIDRLTD 185

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY++  + +  ML    +P       +P VIL+VGVNGVGKTT IGK+
Sbjct: 186 AANRKQLKDGDALYELMKQEMAAMLKTAEQPLVISEDKKPFVILMVGVNGVGKTTTIGKM 245

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+  + G  VMLAAGDTFR+AA++QL++W +R S   +    G+D+A++ ++AF+ A+A
Sbjct: 246 AKQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVVFDAFQAAKA 305

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N   LM  + K+ RV+K++DP APH V+  +DA TGQNA+ QV +
Sbjct: 306 RNIDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVNL 365

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ ++K+DGTA+GG +  +     IP+ ++GVGEGI+DL  F + DF
Sbjct: 366 FNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIDDLRAFKSDDF 420


>gi|315127796|ref|YP_004069799.1| cell division transporter substrate-binding protein
           [Pseudoalteromonas sp. SM9913]
 gi|315016310|gb|ADT69648.1| cell division transporter substrate-binding protein
           [Pseudoalteromonas sp. SM9913]
          Length = 498

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 188/295 (63%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T + +  G   I S +++DD + EELE  L+ +D+GV    K+++ L  
Sbjct: 192 FFSRLKKGLLKTRVNIGSGFASIFSGKKIDDELFEELETQLLTADLGVDTTMKLIDSLTD 251

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY++  + +  ML    +P       +P VIL+VGVNGVGKTT IGK+
Sbjct: 252 AADRKQLKDGDALYELMKQEMATMLKTAEQPLEIPADKKPFVILMVGVNGVGKTTTIGKM 311

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+  + G  VMLAAGDTFR+AA++QL++W +R S   +    G+D+A++ ++AF+ A+A
Sbjct: 312 AKQFQNQGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVVFDAFQAAKA 371

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N   LM  + K+ RV+K++DP APH V+  +DA TGQNA+ QV +
Sbjct: 372 RNVDVLIADTAGRLQNKDNLMQELEKIARVMKKVDPDAPHEVMLTIDAGTGQNAISQVNL 431

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ ++K+DGTA+GG +  +     IP+ ++GVGE I+DL  F + DF
Sbjct: 432 FNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGESIDDLRTFKSDDF 486


>gi|58039892|ref|YP_191856.1| cell division protein FtsY-like protein [Gluconobacter oxydans
           621H]
 gi|58002306|gb|AAW61200.1| Cell division protein FtsY-like protein [Gluconobacter oxydans
           621H]
          Length = 319

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/300 (45%), Positives = 203/300 (67%), Gaps = 4/300 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +G + +S +L      + + R+LD+   EELED LI +D+G AVA++++E   +
Sbjct: 4   FFSRLKQGLSRSSSRLGA----VFTHRKLDETALEELEDELIAADLGPAVAERVIENFRS 59

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            R+ KDV+   +   ++  I ++L P++ PF  D   +PHV+LVVGVNGVGKTT IGK++
Sbjct: 60  TRFGKDVTSDEIRETLATEIARVLEPVAIPFEPDPKKKPHVVLVVGVNGVGKTTTIGKMA 119

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +  ++ G  VML AGDTFR+AA++QL++W  R +   +  + G+DAA LAY+  K+A   
Sbjct: 120 RHYTEEGKSVMLVAGDTFRAAAVEQLEVWGKRANVPVIAGKHGADAAGLAYDGLKRATEA 179

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D+L+IDTAGRLHN   LM  + K+IRV+++ D  APHSVL VLDATTGQNA+ QV +F
Sbjct: 180 GTDLLLIDTAGRLHNKGALMEELAKIIRVMRKFDETAPHSVLLVLDATTGQNAIEQVRVF 239

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             +   TGLI+TK+DG+ARGG ++ +    K+PV+ +GVGE   DL PF A++++  + G
Sbjct: 240 RELVNVTGLIVTKLDGSARGGIVVALAEQFKLPVHMVGVGEQAEDLRPFSAQEYAKGLVG 299


>gi|262379876|ref|ZP_06073032.1| signal recognition particle-docking protein FtsY [Acinetobacter
           radioresistens SH164]
 gi|262299333|gb|EEY87246.1| signal recognition particle-docking protein FtsY [Acinetobacter
           radioresistens SH164]
          Length = 366

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 138/300 (46%), Positives = 197/300 (65%), Gaps = 2/300 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  ++ +G   T   L +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I+  L 
Sbjct: 62  FFSRMKQGLTKTRKNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGVEATKTIINNLT 121

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +    D+     LY  + E +  +L P  KP + D +  P+VILVVGVNGVGKTT IGK
Sbjct: 122 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKNPYVILVVGVNGVGKTTTIGK 181

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++AF+ A+
Sbjct: 182 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVQVVAQGHGADSASVIFDAFESAR 241

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQNA+ QV+
Sbjct: 242 AKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQ 301

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           MF    G TGL +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF AK F A +
Sbjct: 302 MFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKAFVAAL 361


>gi|90023237|ref|YP_529064.1| signal recognition particle-docking protein FtsY [Saccharophagus
           degradans 2-40]
 gi|89952837|gb|ABD82852.1| signal recognition particle-docking protein FtsY [Saccharophagus
           degradans 2-40]
          Length = 375

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/314 (43%), Positives = 207/314 (65%), Gaps = 6/314 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66
           SE L    ++ +G + TS +   G+++++  ++ +DD + EE+E LL+ +D+G+     I
Sbjct: 62  SEKLGVFARIKRGLSRTSNQFANGLSNLLLGKKAIDDELLEEIETLLLMADVGMDATTDI 121

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSH----RPHVILVVGVNG 121
           +E+L  +   K ++    LYD + E + K+L  +  PF+ + SH     P+VILVVGVNG
Sbjct: 122 IEDLTDRVARKQLNDSEALYDALRESLAKLLQQVEVPFDLEQSHAPLPSPYVILVVGVNG 181

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+K+  + G  V+LAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 182 VGKTTTIGKLAKRYQNQGKSVILAAGDTFRAAAVEQLQVWGERNKVPVIAQHSGADSASV 241

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + AQA+ +DVLI DTAGRLHN S LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 242 IFDAVQSAQARGIDVLIADTAGRLHNKSNLMEELAKVKRVMGKLDNTAPHEVLLVLDAGT 301

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F   A  TGL++TK+DGTA+GG +  +   H IPV ++GVGE ++DL+PF
Sbjct: 302 GQNAVSQADHFKKAADVTGLVLTKLDGTAKGGIIFALSKKHNIPVRYIGVGESVDDLQPF 361

Query: 302 VAKDFSAVITGCLD 315
            AK F+  +    D
Sbjct: 362 DAKKFTEALFSTSD 375


>gi|260577029|ref|ZP_05845009.1| signal recognition particle-docking protein FtsY [Rhodobacter sp.
           SW2]
 gi|259020785|gb|EEW24101.1| signal recognition particle-docking protein FtsY [Rhodobacter sp.
           SW2]
          Length = 339

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 125/276 (45%), Positives = 187/276 (67%), Gaps = 1/276 (0%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
           S R LDD + E LE++LI +D+GV  A ++   +   R  K VS   +   ++  I +++
Sbjct: 62  SRRVLDDAMLERLEEVLIEADMGVDCALRVTANIAEGRMGKRVSTAELKEALATEIARIM 121

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P+++P    +  RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++
Sbjct: 122 TPVARPLPL-YPSRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKSVVIAAGDTFRAAAVE 180

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++W  R     + +  GSD A+LA++A  +AQA   D+L+IDTAGRL N + LM  + 
Sbjct: 181 QLQVWGQRAGVPVLTAPEGSDPASLAFDAMTKAQADGADLLMIDTAGRLQNRADLMEELS 240

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K++RV+++ DP APH+ + VLDATTGQNA+ QVE+F  +A  +GL+MTK+DGTA+GG L+
Sbjct: 241 KIVRVIRKKDPDAPHNTILVLDATTGQNAINQVEIFRKLADVSGLVMTKLDGTAKGGILV 300

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            +     +P++ +GVGE I+DL PF  +DF+  + G
Sbjct: 301 ALADKFGLPIHAIGVGEQIDDLAPFDPEDFARALVG 336


>gi|302877705|ref|YP_003846269.1| signal recognition particle-docking protein FtsY [Gallionella
           capsiferriformans ES-2]
 gi|302580494|gb|ADL54505.1| signal recognition particle-docking protein FtsY [Gallionella
           capsiferriformans ES-2]
          Length = 321

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 140/313 (44%), Positives = 205/313 (65%), Gaps = 12/313 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAV 62
           ++  +E  SWI +L  G + T  +L     D+ S   ++DD + EELE +LI +D+G+  
Sbjct: 14  EETVAEKRSWIDRLKAGLSRTGNQL----ADLFSRGGKIDDDLYEELETILITADVGMDA 69

Query: 63  AQKIVEELLTKRYAKD---VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              ++ +L  +R+ ++   V  + +   ++  + K+L PL+ P + + +H+P VI++VGV
Sbjct: 70  TNTLLADL--RRHVREHKLVEAEELKAGLAHCLLKLLGPLAVPLHAE-THKPFVIMMVGV 126

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+K +   GL VMLAAGDTFR+AA +QL  W +R +   +  + G DAA
Sbjct: 127 NGAGKTTSIGKLAKYLQSQGLSVMLAAGDTFRAAAREQLMTWGERNNVTVIAQQSG-DAA 185

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A + AQA+K+DV++ DTAGRL   + LM  I K+ RV+ ++ P APH VL VLDA
Sbjct: 186 AVIYDAVQAAQARKIDVVLADTAGRLTTQAHLMEEIKKVKRVIAKVLPDAPHEVLLVLDA 245

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNAL QV+ F A  G TGLI+TK+DGTA+GG +  I   H IPV F+GVGEG++DL 
Sbjct: 246 NTGQNALSQVKAFDAALGVTGLILTKLDGTAKGGVIAAIAKAHPIPVRFIGVGEGLDDLR 305

Query: 300 PFVAKDFSAVITG 312
           PF A++F   + G
Sbjct: 306 PFDAQEFIDALLG 318


>gi|110835427|ref|YP_694286.1| cell division protein FtsY [Alcanivorax borkumensis SK2]
 gi|110648538|emb|CAL18014.1| Cell division protein FtsY [Alcanivorax borkumensis SK2]
          Length = 397

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 131/296 (44%), Positives = 193/296 (65%), Gaps = 3/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           W R + +G + T   L +G+ D+ + ++ +DD + EE+E  L+ +D+GV     IV+ L 
Sbjct: 93  WTR-MKQGMSKTRKGLGKGLADLLVGAKEIDDEIFEEIETQLLVADVGVEATDVIVQALT 151

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   +++     LY+ +   + K+L+P+ +P   D S +P+VIL+VGVNGVGKTT IGK
Sbjct: 152 DQVSREELVDADALYESLQNELRKLLVPVDQPMQIDSSKKPYVILMVGVNGVGKTTTIGK 211

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ Y+A + AQ
Sbjct: 212 LACRFKAEGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVVAQHTGADSASVVYDAVQAAQ 271

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  D+LI DTAGRLH    LM  + K+ RV+K+L P APH VL VLDA TGQNA+ Q E
Sbjct: 272 SRGADILIADTAGRLHTRGNLMDELTKVTRVMKKLIPDAPHEVLLVLDAGTGQNAINQAE 331

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F   AG TGL +TK+DGTA+GG L  +     +P+ F+GVGE + DL PF A++F
Sbjct: 332 QFRDAAGVTGLALTKLDGTAKGGILFALAKRTGLPIRFIGVGEQLEDLRPFHAEEF 387


>gi|163733314|ref|ZP_02140757.1| signal recognition particle-docking protein FtsY [Roseobacter
           litoralis Och 149]
 gi|161393102|gb|EDQ17428.1| signal recognition particle-docking protein FtsY [Roseobacter
           litoralis Och 149]
          Length = 485

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 127/279 (45%), Positives = 191/279 (68%), Gaps = 1/279 (0%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           I+  R LDD + E+LE+LLI +D+GV  A ++V  +   R  K +SVQ +   ++  I +
Sbjct: 205 IVVRRTLDDDMLEQLEELLIAADMGVDTALRVVANMAEGRVGKKLSVQEIKELLASEIAQ 264

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           ++ P++KP    +   P V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA
Sbjct: 265 IMEPVAKPLPL-YPRTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKKVVIAAGDTFRAAA 323

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           ++QL++W DR     + +  GSD A+LA++A  +AQ    D+L+IDTAGRL N + LM  
Sbjct: 324 VEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMVKAQQDGADLLLIDTAGRLQNRTDLMEE 383

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K++RV+++ D  APH+ L VLDATTGQNAL QV++F  ++  +GL+MTK+DGTA+GG 
Sbjct: 384 LAKIVRVIRKKDETAPHNTLLVLDATTGQNALNQVKVFSDISDVSGLVMTKLDGTAKGGV 443

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           L+ +     +P++ +GVGE I+DL+ F  +DF+  + G 
Sbjct: 444 LVALADKFGLPIHAIGVGEQIDDLDAFDPEDFADALMGL 482


>gi|23008862|ref|ZP_00050130.1| COG0552: Signal recognition particle GTPase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 218

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 157/215 (73%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++ P   D + +P+VIL VGVNG GKTT IGKLS K    G  VMLAAGDTFR+ AI+QL
Sbjct: 1   MALPITIDSAKKPYVILTVGVNGAGKTTTIGKLSLKFKAEGRSVMLAAGDTFRAPAIEQL 60

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W +RT    +    GSDAA LA++AFK+A+    DVL+IDTAGRL N + LMA + K+
Sbjct: 61  RVWGERTGTPVISRAQGSDAAGLAFDAFKEARENGTDVLLIDTAGRLQNKAGLMAELEKI 120

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++LDP APH+ L VLDAT GQNAL QVE+F   A  +GL+MTK+DGTARGG L+ +
Sbjct: 121 VRVIRKLDPEAPHATLLVLDATVGQNALSQVELFSQAAPVSGLVMTKLDGTARGGILVAL 180

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +PV+F+GVGEG+ DLEPF A+DF+  ITG 
Sbjct: 181 AAKFGLPVHFIGVGEGVEDLEPFAARDFARAITGL 215


>gi|145300820|ref|YP_001143661.1| cell division protein FtsY [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853592|gb|ABO91913.1| cell division protein FtsY [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 631

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 191/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   +  G   + S +++DD + EELE  L+ +D+GV   ++I++ L+ 
Sbjct: 328 FFARLKRSLVRTKENIGSGFFGLFSGKKIDDDLFEELETQLLTADLGVDTTRRIIDGLVQ 387

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + +  ML  + +P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 388 HADRKQLKDAEALYGLLKQDMGAMLAQVEQPLVIDTSKKPYVILMVGVNGVGKTTTIGKL 447

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ Y+A + A++
Sbjct: 448 AKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIYDAIEAARS 507

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVLI DTAGRL N S LM  + K++RV+K+LD  APH ++  LDA TGQNAL Q ++
Sbjct: 508 RGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEIMLTLDAGTGQNALSQAKL 567

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F    G  G+++TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PFVA DF
Sbjct: 568 FSEAVGLDGIVLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDF 622


>gi|13377875|gb|AAK20880.1|AF334761_1 cell division protein FtsY [Aeromonas hydrophila]
          Length = 333

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +  +    T   +  G   + S +++DD + EELE  L+ +D+GV   ++I++ L+ 
Sbjct: 30  FFARFKRSMVRTKENIGSGFFGLFSGKKIDDELFEELETQLLTADLGVDTTRRIIDGLVQ 89

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + +  ML  + +P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 90  HADRKQLKDAEALYGLLKQDMGAMLAQVEQPLVIDTSKKPYVILMVGVNGVGKTTTIGKL 149

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ Y+A + A++
Sbjct: 150 AKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIYDAIEAARS 209

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA TGQNAL Q ++
Sbjct: 210 RGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEVMLTLDAGTGQNALSQAKL 269

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F    G  G+++TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PFVA DF
Sbjct: 270 FSEAVGLDGIVLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDF 324


>gi|237809748|ref|YP_002894188.1| signal recognition particle-docking protein FtsY [Tolumonas auensis
           DSM 9187]
 gi|237502009|gb|ACQ94602.1| signal recognition particle-docking protein FtsY [Tolumonas auensis
           DSM 9187]
          Length = 435

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 125/296 (42%), Positives = 187/296 (63%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S   +L KG   T   +  G   +   ++LDD + +ELE  L+ +D+GV   Q+I++ L+
Sbjct: 130 SLFGRLVKGLMRTRESIGAGFMALFRGKKLDDDLFDELETQLLTADLGVETTQRIMQGLI 189

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +     +     LYD+  + +  +L P+S+P   D S  P+VIL++GVNGVGKTT IGK
Sbjct: 190 KQAKFHQLKDAEALYDLLKQEMAAILQPVSQPLQIDSSKTPYVILMIGVNGVGKTTTIGK 249

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K     G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + A+
Sbjct: 250 LAKHFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNHIPVIAQHTGADSASVIFDAIQAAK 309

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++ +D+LI DTAGRL N   LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q +
Sbjct: 310 SRNIDILIADTAGRLQNKGHLMEELKKIVRVMKKLDDSAPHEVMLTLDASTGQNAISQAK 369

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F    G  G+ +TK+DGTA+GG +  I     IP+ ++GVGE I DL PF A DF
Sbjct: 370 LFGEAVGVNGITLTKLDGTAKGGVIFAIANQFGIPIRYIGVGEAIEDLRPFEANDF 425


>gi|332308276|ref|YP_004436127.1| signal recognition particle-docking protein FtsY [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332175605|gb|AEE24859.1| signal recognition particle-docking protein FtsY [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 483

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/297 (41%), Positives = 194/297 (65%), Gaps = 1/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +  + KL +  + T + L  G   +   + +DD + EELE  L+ +D+G+    KI+++L
Sbjct: 169 MGLLAKLRQSLSRTKVNLGSGFVSLFRGKAIDDDLYEELETQLLVADVGMDTTNKIIKKL 228

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                   +     LY +  + + ++L  +S+P   +    P VIL+VGVNGVGKTT IG
Sbjct: 229 TDGAKRNQLKDGDALYQLLKQQMSEILQEVSQPLVPEADEGPFVILMVGVNGVGKTTTIG 288

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++K+    G KVMLAAGDTFR+AA++QL++W +R +   +  + GSD+A++ Y+A + A
Sbjct: 289 KMAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQKTGSDSASVIYDALESA 348

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ VDVLI DTAGRL N   LM  + K++RV+++++P+APH V+  LDA TGQNA+ Q 
Sbjct: 349 KARNVDVLIADTAGRLQNKEHLMEELKKVLRVMRKINPNAPHEVMLTLDAATGQNAVSQT 408

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++F+   G +G+ +TK+DGTA+GG +  +    KIP+ ++GVGEGI+DL PF + +F
Sbjct: 409 KLFNQAVGLSGITLTKLDGTAKGGVIFALADQFKIPIRYIGVGEGIDDLRPFASDEF 465


>gi|117620356|ref|YP_854900.1| cell division protein FtsY [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561763|gb|ABK38711.1| cell division protein FtsY [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 633

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   +  G   +   +++DD + EELE  L+ +D+GV    +I+E L+ 
Sbjct: 330 FFARLKRSLVRTRENIGSGFFGLFRGKKIDDELFEELETQLLTADLGVDTTSRIIEGLVQ 389

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + +ML  + +P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 390 HADRKQLKDAEALYGLLKQDMGEMLAKVEQPLVIDTSKKPYVILMVGVNGVGKTTTIGKL 449

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ Y+A + A++
Sbjct: 450 AKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIYDAIEAARS 509

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVLI DTAGRL N S LM  + K++RV+K+LD  APH ++  LDA TGQNAL Q ++
Sbjct: 510 RGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDDAAPHEIMLTLDAGTGQNALSQAKL 569

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F    G TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PFVA DF
Sbjct: 570 FSEAVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVANDF 624


>gi|262277881|ref|ZP_06055674.1| signal recognition particle-docking protein FtsY [alpha
           proteobacterium HIMB114]
 gi|262224984|gb|EEY75443.1| signal recognition particle-docking protein FtsY [alpha
           proteobacterium HIMB114]
          Length = 305

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 127/298 (42%), Positives = 195/298 (65%), Gaps = 4/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   +K+++G   TS     GI DI    +  + + ++L D +I SDIG+ + +KI++ +
Sbjct: 1   MQIFKKISEGLKKTSKNFGNGINDIFKKSKPSNEILQDLGDFMISSDIGLPLTEKIIQNI 60

Query: 71  LTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
             K+++ +   Q+   ++  +E++  +L P+ +   ++ S+    ILV GVNG GKTT I
Sbjct: 61  KNKKFSDEELNQKNFLEILTNEMLE-ILEPVEENI-FNKSNGLKTILVCGVNGTGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL K + D   KV++ A DTFR+AAI+QL  W  + S D   S+ G+D AA+A++  ++
Sbjct: 119 GKLCKILKDNNSKVIVGAADTFRAAAIEQLDNWCQKNSIDIEKSDPGADPAAVAFKTLEK 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    D  IIDTAGRLHN   LM    K+IRV+K++D +AP   + VLDATTGQNAL Q
Sbjct: 179 AKLNNYDYCIIDTAGRLHNKKNLMDEFSKIIRVMKKIDENAPEKTIIVLDATTGQNALNQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +E F+ ++  +GLIMTK+DGTA+GG L+ I   +K+P+Y +GVGE ++DL+PFVAKDF
Sbjct: 239 IEEFNKISKLSGLIMTKLDGTAKGGVLLSITEKYKLPIYAIGVGEQVDDLQPFVAKDF 296


>gi|238921553|ref|YP_002935068.1| cell division protein FtsY, [Edwardsiella ictaluri 93-146]
 gi|238871122|gb|ACR70833.1| cell division protein FtsY, putative [Edwardsiella ictaluri 93-146]
          Length = 557

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 129/300 (43%), Positives = 192/300 (64%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + +ELE+ LI +D+GV   +KI++ L  
Sbjct: 255 FFARLKRSLVKTRQNLGSGFFSLFRGKKIDDDLFDELEEQLIVADVGVETTRKIIDSLTA 314

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTT 126
               K++     LY     ++ E++ K+  PL      D S H+P VIL+VGVNGVGKTT
Sbjct: 315 HASRKELKDAEALYGKLKEEMGEILQKVDAPL------DISGHQPFVILMVGVNGVGKTT 368

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A 
Sbjct: 369 TIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHISVIAQHTGADSASVIFDAI 428

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+KVDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+
Sbjct: 429 QAAKARKVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEQAPHEVMLTIDASTGQNAV 488

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F+   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF A DF
Sbjct: 489 SQARLFNEAVGLTGITLTKLDGTAKGGVIFSVADRFGIPIRYIGVGEGIEDLRPFKADDF 548


>gi|77165401|ref|YP_343926.1| cell division transporter substrate-binding protein FtsY
           [Nitrosococcus oceani ATCC 19707]
 gi|254433367|ref|ZP_05046875.1| signal recognition particle-docking protein FtsY [Nitrosococcus
           oceani AFC27]
 gi|76883715|gb|ABA58396.1| signal recognition particle-docking protein FtsY [Nitrosococcus
           oceani ATCC 19707]
 gi|207089700|gb|EDZ66971.1| signal recognition particle-docking protein FtsY [Nitrosococcus
           oceani AFC27]
          Length = 362

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 131/313 (41%), Positives = 201/313 (64%), Gaps = 3/313 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60
           S++  A E  S  ++L      T   L  GI D++  ++ +DD + EE+E  L+ +D+GV
Sbjct: 32  SSETGAGEKQSLFKRLRDRLGRTRGNLTGGIADLMLGKKSIDDELLEEIETQLLIADLGV 91

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              Q I+E+L  +   + +     L + + E + ++L P ++P     + +P VIL+VGV
Sbjct: 92  EATQAIIEDLTIRTSREQLQDAEALMEALRENMQELLTPCNQPLIIPAAIKPFVILMVGV 151

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+KK    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A
Sbjct: 152 NGVGKTTTIGKLAKKFQAEGRSVMLAAGDTFRAAAVEQLQVWGERNQVPVMAQHSGADSA 211

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + AQ + +DVLI DTAGRLH  + LM  + K+ RV+ +++PHAPH ++  +DA
Sbjct: 212 SVIFDAVQSAQVRGIDVLIADTAGRLHTQTNLMEELKKVKRVMGKVNPHAPHEIMLTVDA 271

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNAL Q   FH     TG+I+TK+DGTA+GG +  I     +P+ F+GVGEGI+DL 
Sbjct: 272 GTGQNALNQARQFHEAVDLTGIILTKLDGTAKGGVIFAIAKKMGLPIRFIGVGEGIDDLR 331

Query: 300 PFVAKDF-SAVIT 311
           PF A++F +A++T
Sbjct: 332 PFNAEEFVNALLT 344


>gi|109900243|ref|YP_663498.1| signal recognition particle-docking protein FtsY [Pseudoalteromonas
           atlantica T6c]
 gi|109702524|gb|ABG42444.1| signal recognition particle-docking protein FtsY [Pseudoalteromonas
           atlantica T6c]
          Length = 485

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 123/292 (42%), Positives = 187/292 (64%), Gaps = 1/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           KL +  + T   L  G   +   + +DD + EELE  L+ +D+G+    KI+  L     
Sbjct: 176 KLRQSLSRTKENLGSGFISLFRGKAIDDDLFEELETQLLVADVGIDTTSKIISRLTDSAK 235

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
              +     LY +  + +  +L  +S+P        P VIL+VGVNGVGKTT IGK++K+
Sbjct: 236 RNQLKDGEALYQLLKQQMSNILQEVSQPLEPKSEDGPFVILMVGVNGVGKTTTIGKMAKQ 295

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G KVMLAAGDTFR+AA++QL++W +R +   +  + GSD+A++ Y+A + A+A+ V
Sbjct: 296 FQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQKTGSDSASVIYDALESAKARNV 355

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N   LM  + K++RV+++++P+APH V+  LDA TGQNA+ Q ++F+ 
Sbjct: 356 DVLIADTAGRLQNKDHLMEELKKVVRVMRKINPNAPHEVMLTLDAATGQNAVSQTKLFNQ 415

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TG+ +TK+DGTA+GG +  +    KIP+ ++GVGEGI+DL PF + +F
Sbjct: 416 AVGLTGITLTKLDGTAKGGVIFALADQFKIPIRYIGVGEGIDDLRPFASDEF 467


>gi|254427512|ref|ZP_05041219.1| signal recognition particle-docking protein FtsY, putative
           [Alcanivorax sp. DG881]
 gi|196193681|gb|EDX88640.1| signal recognition particle-docking protein FtsY, putative
           [Alcanivorax sp. DG881]
          Length = 394

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 131/296 (44%), Positives = 193/296 (65%), Gaps = 3/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           W R + +G + T   L +G+ D+ + ++ +DD + EE+E  L+ +D+GV     IV+ L 
Sbjct: 90  WTR-MKQGMSKTRKGLGKGLADLLVGAKEIDDEIFEEIETQLLVADVGVEATDVIVQALT 148

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   +++     LY+ +   + K+L+P+ +P   D S +P+VIL+VGVNGVGKTT IGK
Sbjct: 149 DQVTREELVDADALYESLQNELRKLLVPVDQPMQIDGSKKPYVILMVGVNGVGKTTTIGK 208

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ Y+A + AQ
Sbjct: 209 LACRFKAEGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVVAQHTGADSASVVYDAVQAAQ 268

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  D+LI DTAGRLH    LM  + K+ RV+K+L P APH VL VLDA TGQNA+ Q E
Sbjct: 269 SRGADILIADTAGRLHTRGNLMEELTKVTRVMKKLIPDAPHEVLLVLDAGTGQNAINQAE 328

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F   AG TGL +TK+DGTA+GG L  +     +P+ F+GVGE + DL PF A++F
Sbjct: 329 QFRDAAGVTGLALTKLDGTAKGGILFALAKRTGLPIRFIGVGERLEDLRPFHAEEF 384


>gi|212711016|ref|ZP_03319144.1| hypothetical protein PROVALCAL_02085 [Providencia alcalifaciens DSM
           30120]
 gi|212686184|gb|EEB45712.1| hypothetical protein PROVALCAL_02085 [Providencia alcalifaciens DSM
           30120]
          Length = 601

 Score =  255 bits (652), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 128/295 (43%), Positives = 189/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   L  G   +   +++DD + +ELE+ L+ +D+GV   +KI++ L  
Sbjct: 299 FFSRLKKGLLKTRQNLGSGFLGLFKGKKIDDDLFDELEEQLLIADVGVETTRKIIDNLTH 358

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++     LY  + E +  +L  + KP   +   +P+VIL+VGVNGVGKTT IGKL
Sbjct: 359 HASRKELKDAEALYGKLREEMSDILSTVDKPLVIE-GKKPYVILMVGVNGVGKTTTIGKL 417

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D A++ Y+A + AQA
Sbjct: 418 ARQYQSEGKSVMLAAGDTFRAAAVEQLQVWGERNKISVVAQHTGADPASVIYDAIQSAQA 477

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DVLI DTAGRL N + LM  + K++RV+K+LD  APH ++  LDA+TGQNA+ Q ++
Sbjct: 478 KGADVLIADTAGRLQNKAHLMEELKKIVRVMKKLDESAPHEIMLTLDASTGQNAVSQAKI 537

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ ++G+GEGI DL PF A DF
Sbjct: 538 FNDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRPFKADDF 592


>gi|254490588|ref|ZP_05103774.1| signal recognition particle-docking protein FtsY [Methylophaga
           thiooxidans DMS010]
 gi|224464332|gb|EEF80595.1| signal recognition particle-docking protein FtsY [Methylophaga
           thiooxydans DMS010]
          Length = 354

 Score =  255 bits (651), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 131/309 (42%), Positives = 197/309 (63%), Gaps = 2/309 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   +  +L +G + TS KL EG   +I  R+ +DD + EELE  LI +D+G+    +I+
Sbjct: 45  EKTGFFGRLKQGLSRTSNKLTEGFASLILGRKTIDDDLLEELETQLITADLGIDATNRII 104

Query: 68  EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +L  +   K +S    L+D + + +  +L P S+P        P+VIL+VG+NGVGKTT
Sbjct: 105 SDLTQRVARKQLSDVEALFDAMRDDMVTILQPSSQPLTVPDKPGPYVILMVGINGVGKTT 164

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R S   +    G+D+A++ ++A 
Sbjct: 165 TIGKLAKQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQPKGADSASVIFDAL 224

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+++  D+LI DTAGRLH  S LM  + K+ RV+ ++D  APH ++ VLDA TGQNAL
Sbjct: 225 QAAKSRGADILIADTAGRLHTQSNLMEELKKVKRVMGKIDETAPHEIMLVLDAGTGQNAL 284

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +Q + F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I+DL PF A DF
Sbjct: 285 QQAQQFNDAVGVTGITLTKLDGTAKGGIIFAIADKTGLPIRYIGVGEKIDDLRPFDAADF 344

Query: 307 SAVITGCLD 315
              + G  D
Sbjct: 345 VDALLGRED 353


>gi|269140670|ref|YP_003297371.1| cell division protein [Edwardsiella tarda EIB202]
 gi|267986331|gb|ACY86160.1| cell division protein [Edwardsiella tarda EIB202]
 gi|304560455|gb|ADM43119.1| Signal recognition particle receptor protein FtsY [Edwardsiella
           tarda FL6-60]
          Length = 589

 Score =  255 bits (651), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 129/300 (43%), Positives = 192/300 (64%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + +ELE+ LI +D+GV   +KI++ L  
Sbjct: 287 FFARLKRSLVKTRQNLGSGFFGLFRGKKIDDDLFDELEEQLIVADVGVETTRKIIDSLTA 346

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTT 126
               K++     LY     ++ E++ K+  PL      D S H+P VIL+VGVNGVGKTT
Sbjct: 347 HASRKELKDAEALYGKLKEEMGEILQKVDAPL------DISGHQPFVILMVGVNGVGKTT 400

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A 
Sbjct: 401 TIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAI 460

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+KVDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+
Sbjct: 461 QAAKARKVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEQAPHEVMLTIDASTGQNAV 520

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F+   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF A DF
Sbjct: 521 SQARLFNEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFKADDF 580


>gi|254461979|ref|ZP_05075395.1| signal recognition particle-docking protein FtsY [Rhodobacterales
           bacterium HTCC2083]
 gi|206678568|gb|EDZ43055.1| signal recognition particle-docking protein FtsY [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 399

 Score =  254 bits (650), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 124/277 (44%), Positives = 189/277 (68%), Gaps = 1/277 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           ++ R LDD + E+LE+LLI SD+GV  A ++   +   R  + +S + +   ++  I ++
Sbjct: 121 VTRRVLDDDMLEQLEELLISSDMGVDTALRVSANMAEGRMGRKLSTEEIKDLLAAEIARI 180

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + P++KP    +  +P V+LVVGVNG GKTT IGKL+ +   +G  V++AAGDTFR+AA+
Sbjct: 181 MEPVAKPLPI-YPKKPQVVLVVGVNGSGKTTTIGKLASQFKASGKNVVIAAGDTFRAAAV 239

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL++W  R     + +  GSD A+LA++A  QA+    D+L+IDTAGRL N + LM  +
Sbjct: 240 EQLQVWGTRAGVPVLTAPEGSDPASLAFDAMAQAEEDGADLLMIDTAGRLQNRADLMEEL 299

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K++RV+++ DP APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+DGTA+GG L
Sbjct: 300 SKIVRVIQKKDPSAPHNTLLVLDATTGQNALNQVETFQKLADVSGLVMTKLDGTAKGGVL 359

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           + +     +P++ +GVGE I+DL+ F  +DF+  +TG
Sbjct: 360 VALADKFGLPIHAIGVGEQIDDLDAFDPEDFANALTG 396


>gi|77359320|ref|YP_338895.1| cell division transporter substrate-binding protein
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874231|emb|CAI85452.1| Cell division transporter substrate-binding protein FtsY
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 651

 Score =  254 bits (650), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T + +  G   I S +++DD + EELE  L+ +D+GV    K+++ L  
Sbjct: 345 FFSRLKKGLLKTRVNIGSGFASIFSGKKIDDDLFEELETQLLTADLGVDTTMKLIDRLTD 404

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY++  + +  ML    +P       +P VIL+VGVNGVGKTT IGKL
Sbjct: 405 AANRKQLKDGDALYELMKQEMAVMLKTAEQPLVIPADKKPFVILMVGVNGVGKTTTIGKL 464

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G  VMLAAGDTFR+AA++QL++W +R S   +    G+D+A++ ++AF+ A+A
Sbjct: 465 AKQFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVIFDAFQAAKA 524

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N   LM  + K+ RV+K++DP APH V+  +DA TGQNA+ QV +
Sbjct: 525 RNVDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVNL 584

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ ++K+DGTA+GG +  +     IP+ ++GVGE I+DL  F + DF
Sbjct: 585 FNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGESIDDLRAFKSDDF 639


>gi|169633653|ref|YP_001707389.1| cell division protein [Acinetobacter baumannii SDF]
 gi|169152445|emb|CAP01410.1| cell division protein [Acinetobacter baumannii]
          Length = 368

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/300 (44%), Positives = 194/300 (64%), Gaps = 2/300 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  ++ +G + T     +G+ +I I  + +DD + EE+E  L+ +DIGV   + I+  L 
Sbjct: 64  FFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEGQLLVADIGVDATKTIITNLT 123

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVGKTT IGK
Sbjct: 124 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGK 183

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++A + A+
Sbjct: 184 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDASESAR 243

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQNA+ QV+
Sbjct: 244 AKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQ 303

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF AK F A +
Sbjct: 304 EFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 363


>gi|253991203|ref|YP_003042559.1| cell division protein ftsy [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782653|emb|CAQ85817.1| cell division protein ftsy [Photorhabdus asymbiotica]
          Length = 494

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   +KI+  L  
Sbjct: 192 FFTRLKRSLVKTRQNLGSGFLSLFRGKKIDDDLFDELEEQLLIADVGVDTTRKIIGSLTA 251

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++     LY  + E +  +L+ + KP + +    P+VIL+VGVNGVGKTT IGKL
Sbjct: 252 HASRKELKDAEALYAKLKEEMSGILVKVDKPLDIE-GKTPYVILMVGVNGVGKTTTIGKL 310

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D A++ ++A + A+A
Sbjct: 311 ARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQHTGADPASVIFDAMQSAKA 370

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D+LI DTAGRL N S LM  + K++RV+K+LD  APH ++  LDA+TGQNA+ Q ++
Sbjct: 371 KGIDILIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTLDASTGQNAISQAKL 430

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A DF
Sbjct: 431 FHEAVGLTGISLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADDF 485


>gi|110679220|ref|YP_682227.1| signal recognition particle-docking protein FtsY [Roseobacter
           denitrificans OCh 114]
 gi|109455336|gb|ABG31541.1| signal recognition particle-docking protein FtsY [Roseobacter
           denitrificans OCh 114]
          Length = 512

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/274 (45%), Positives = 189/274 (68%), Gaps = 1/274 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LE+LLI +D+GV  A ++V  +   R  K +SVQ +   ++  I +++ P
Sbjct: 236 RTLDDDMLEQLEELLISADMGVDTALRVVANMAEGRVGKKLSVQEIKELLASEIAQIMEP 295

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++KP    +   P V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA++QL
Sbjct: 296 VAKPLPL-YPRTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKKVVIAAGDTFRAAAVEQL 354

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD A+LA++A  +AQ    D+L+IDTAGRL N + LM  + K+
Sbjct: 355 QVWGDRAGVPVLTAPEGSDPASLAFDAMLKAQRDGADLLLIDTAGRLQNRTDLMEELAKI 414

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ D  APH+ L VLDATTGQNAL QV++F  ++  +GL+MTK+DGTA+GG L+ +
Sbjct: 415 VRVIRKNDETAPHNTLLVLDATTGQNALNQVKVFSDISDVSGLVMTKLDGTAKGGVLVAL 474

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                +P++ +GVGE I+DL+ F  +DF+  + G
Sbjct: 475 ADKFGLPIHAIGVGEQIDDLDAFDPEDFADALMG 508


>gi|269103876|ref|ZP_06156573.1| signal recognition particle receptor protein FtsY [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163774|gb|EEZ42270.1| signal recognition particle receptor protein FtsY [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 462

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 129/294 (43%), Positives = 196/294 (66%), Gaps = 8/294 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +RK  + F S+   L +G       +++DD + EELE+ L+ +D+G+    KI+E L  K
Sbjct: 167 LRKTKENFGSSFFSLFKG-------KKIDDELFEELEEQLLIADVGMDTTVKIIENLTEK 219

Query: 74  RYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              K++     LY +  + + +ML  + +PF  D S +P+VIL+VGVNGVGKTT IGKL+
Sbjct: 220 ASRKELKDGEALYGLLKDELAEMLAKVEQPFEIDTSKKPYVILMVGVNGVGKTTTIGKLA 279

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           KK    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A+AK
Sbjct: 280 KKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIFDAIESAKAK 339

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +DV+I DTAGRL N + LM  + K++RV+K++DP APH ++  LDA TGQNA+ Q ++F
Sbjct: 340 NIDVIIADTAGRLQNKANLMEELRKIVRVMKKIDPDAPHEIMLTLDAGTGQNAISQAKLF 399

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             VA  +G+ +TK+DGTA+GG +  I     IP+ ++G+GEGI+DL PF A +F
Sbjct: 400 SEVAPVSGITLTKLDGTAKGGVIFAIADQFHIPIRYIGIGEGIDDLRPFAADEF 453


>gi|292492241|ref|YP_003527680.1| signal recognition particle-docking protein FtsY [Nitrosococcus
           halophilus Nc4]
 gi|291580836|gb|ADE15293.1| signal recognition particle-docking protein FtsY [Nitrosococcus
           halophilus Nc4]
          Length = 356

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/301 (42%), Positives = 193/301 (64%), Gaps = 6/301 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-- 70
            ++L      T   L  GI D+ +  + +DD + EE+E  L+ +D+GV   Q I++ L  
Sbjct: 45  FKRLRNRLGRTRGNLTGGIADLMLGKKNIDDELLEEIETQLLVADVGVEATQSIIDNLTV 104

Query: 71  -LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            ++++  KD +   ++  + E + ++L+P S P       +P VIL+VGVNGVGKTT IG
Sbjct: 105 RVSRKQLKDPAA--LMAALRENMQELLLPSSHPLVIPEGIKPFVILMVGVNGVGKTTTIG 162

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK    G  VMLAAGDTFR+AA++QL+ W +R     +    G+D+A++ ++A + A
Sbjct: 163 KLAKKFQAEGRSVMLAAGDTFRAAAVEQLQAWGERNQVPVIAQRSGADSASVIFDALQSA 222

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA+ +DVLI DTAGRLH  + LM  + K+ RV+ ++DP APH ++  +DA TGQNAL Q 
Sbjct: 223 QARGIDVLIADTAGRLHTQANLMEELKKVKRVMGKVDPQAPHEIMLTVDAGTGQNALNQA 282

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+ +TK+DGTA+GG +  I     +P+ F+GVGEGI+DL PF A++F A 
Sbjct: 283 KQFHEAVGLTGITLTKLDGTAKGGVIFAIAKKMALPIRFIGVGEGIDDLRPFDAEEFVAA 342

Query: 310 I 310
           +
Sbjct: 343 L 343


>gi|183598034|ref|ZP_02959527.1| hypothetical protein PROSTU_01390 [Providencia stuartii ATCC 25827]
 gi|188022813|gb|EDU60853.1| hypothetical protein PROSTU_01390 [Providencia stuartii ATCC 25827]
          Length = 640

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 191/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   L  G   + + +++DD + +ELE+ L+ +D+GV   +KI++ L  
Sbjct: 338 FFARLKKGLLKTRQNLGSGFLGLFTGKKIDDDLFDELEEQLLIADVGVDTTRKIIDNLTA 397

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++     LY  + E +  +L  + KP   +   +P+VIL+VGVNGVGKTT IGKL
Sbjct: 398 HASRKELKDAEALYSKLREEMSDILAGVDKPLVIE-DKKPYVILMVGVNGVGKTTTIGKL 456

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D A++ ++A + A+A
Sbjct: 457 ARQYQSEGKTVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADPASVIFDAIQSAKA 516

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VDVLI DTAGRL N + LM  + K++RV+K+LD  APH ++  LDA+TGQNA+ Q ++
Sbjct: 517 KGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEEAPHEIMLTLDASTGQNAVSQAKL 576

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ ++G+GEGI DL PF A DF
Sbjct: 577 FNDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRPFKADDF 631


>gi|329847629|ref|ZP_08262657.1| signal recognition particle-docking protein FtsY [Asticcacaulis
           biprosthecum C19]
 gi|328842692|gb|EGF92261.1| signal recognition particle-docking protein FtsY [Asticcacaulis
           biprosthecum C19]
          Length = 326

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/311 (44%), Positives = 196/311 (63%), Gaps = 19/311 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           W  +LT G + TS  L E +T + S +  L D   E LEDLLI SD+G  ++  I  ++ 
Sbjct: 21  WFERLTHGLSRTSQTLTEQVTQVFSQKESLSDSDLEALEDLLIESDLGPQISANISAKMA 80

Query: 72  TKRYA--KDVSVQR-----VLYDVSELIHK--MLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             +++  KD +  R      L D  EL++      PL  P       +P+++L VGVNG 
Sbjct: 81  QAKFSSSKDSTAVREALASALAD--ELVNHEGTFEPLGGP-------KPYIVLFVGVNGS 131

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT +GK++  ++  G KV++ AGDTFR+AA++QLK+W++R  ADF+  + G+DAA LA
Sbjct: 132 GKTTTLGKIAASLTAKGAKVLIVAGDTFRAAAVEQLKVWSERAKADFMGRKTGADAAGLA 191

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y++  +A+ +  DV++IDTAGRL N   LM  + K++RV+KR+DP APH  L VLDAT G
Sbjct: 192 YDSVVKAKEEGYDVVLIDTAGRLQNKQALMDELLKIVRVIKRVDPDAPHETLLVLDATVG 251

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           +NAL Q ++F   A  +GL+MTK+DGTARGG LIPI      P+  +GVGE I DL  F 
Sbjct: 252 RNALSQEQIFGRQAFVSGLVMTKLDGTARGGILIPIAKASDAPIKLIGVGEDIEDLHAFK 311

Query: 303 AKDFSAVITGC 313
           A+DF+  + G 
Sbjct: 312 ARDFARSMVGL 322


>gi|325275629|ref|ZP_08141529.1| signal recognition particle-docking protein FtsY [Pseudomonas sp.
           TJI-51]
 gi|324099236|gb|EGB97182.1| signal recognition particle-docking protein FtsY [Pseudomonas sp.
           TJI-51]
          Length = 329

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 129/296 (43%), Positives = 191/296 (64%), Gaps = 2/296 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   ++ +DD + +E+E  L+ +D+GV     IV+ L 
Sbjct: 25  FFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSTIVQNLT 84

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   K ++    LY  + E +  +L P+ +P      ++P+VILVVGVNG GKTT IGK
Sbjct: 85  QKVARKQLADADALYKSLQEELAALLRPVEQPLKVQAQNKPYVILVVGVNGAGKTTTIGK 144

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A+
Sbjct: 145 LAKKLQQEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAK 204

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q +
Sbjct: 205 ARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAISQAK 264

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F+     TGL +TK+DGTA+GG +  +    K+P+ F+GVGEGI+DL  F A+ F
Sbjct: 265 YFNQSVELTGLALTKLDGTAKGGVIFALAKQFKLPIRFIGVGEGIDDLRTFEAEPF 320


>gi|313501087|gb|ADR62453.1| Signal recognition particle-docking protein FtsY [Pseudomonas
           putida BIRD-1]
          Length = 372

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/296 (43%), Positives = 191/296 (64%), Gaps = 2/296 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   ++ +DD + +E+E  L+ +D+GV     IV+ L 
Sbjct: 68  FFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSAIVQNLT 127

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   K ++    LY  + E +  +L P+ +P N    ++P+VILVVGVNG GKTT IGK
Sbjct: 128 QKVARKQLADADALYKSLQEELAALLRPVEQPLNVQAQNKPYVILVVGVNGAGKTTTIGK 187

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A+
Sbjct: 188 LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAK 247

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q +
Sbjct: 248 ARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAISQAK 307

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F+     TGL +TK+DGTA+GG +  +     IP+ F+GVGEGI+DL  F A+ F
Sbjct: 308 YFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPF 363


>gi|114571392|ref|YP_758072.1| signal recognition particle-docking protein FtsY [Maricaulis maris
           MCS10]
 gi|114341854|gb|ABI67134.1| signal recognition particle-docking protein FtsY [Maricaulis maris
           MCS10]
          Length = 309

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 129/301 (42%), Positives = 197/301 (65%), Gaps = 1/301 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +G   +S KL + ++ I + R+LD    EELED+LI +D+G A A ++ E L  
Sbjct: 8   FFSRLAQGLKRSSSKLGDSVSAIFTKRKLDREALEELEDVLIAADLGAAAAMQVTERLAK 67

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            R+ K+VS + V   ++E++ + L PL +  +     RP V+L VGVNG GKTT +GK++
Sbjct: 68  DRFDKEVSDEEVREALAEVVAETLTPLEQGLDLS-GARPQVVLFVGVNGSGKTTTLGKIA 126

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            K+   G   +LAAGDTFR+AAI+Q+ +W +R  +  +  EIG+DAA LA++A  QA   
Sbjct: 127 VKLKREGRNPILAAGDTFRAAAIEQVSVWGERAKSPVIKREIGADAAGLAFDAIDQADRD 186

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV++IDTAGRL N + LM  + K++RV+K+  P APH V+ VLD T G NA+ Q + F
Sbjct: 187 GHDVVLIDTAGRLQNKAELMDELRKVVRVIKKRMPDAPHHVVLVLDGTVGSNAVSQAQAF 246

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              +  TG++MTK+DGTA+GG L+ +    ++P++++G+GEG  DL+PF A+DFS  + G
Sbjct: 247 LEASEVTGVVMTKLDGTAKGGALVQVAEKFQLPIHYIGIGEGEEDLQPFSARDFSRALAG 306

Query: 313 C 313
            
Sbjct: 307 L 307


>gi|260427997|ref|ZP_05781976.1| cell division protein FtsY [Citreicella sp. SE45]
 gi|260422489|gb|EEX15740.1| cell division protein FtsY [Citreicella sp. SE45]
          Length = 441

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 131/279 (46%), Positives = 193/279 (69%), Gaps = 2/279 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E LE+LLI +D+GV  A ++   +   R+ K VS Q +   ++  + +++ P
Sbjct: 165 RVLDDEMLESLEELLIAADMGVDTALRVSANIAEGRFGKRVSTQEIKQALAGEVARIMEP 224

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    +  +P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 225 VARPLPL-YPRKPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQL 283

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W  R     + +  GSD A+LA++A  +AQA+  D+L+IDTAGRL N   LM  + K+
Sbjct: 284 QVWGQRAGVPVLTAPEGSDPASLAFDAMSKAQAEGADLLMIDTAGRLQNRQDLMEELAKI 343

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+ L VLDATTGQNAL QVE+F  VA  +GL+MTK+DGTA+GG L+ +
Sbjct: 344 VRVIRKKDPDAPHNTLLVLDATTGQNALNQVEIFRQVADVSGLVMTKLDGTAKGGVLVAL 403

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
                +P++ +GVGE I+DL PF  ++F+A +TG LD G
Sbjct: 404 ADRFGLPIHAIGVGEQIDDLAPFDPEEFAAALTG-LDNG 441


>gi|163746083|ref|ZP_02153442.1| signal recognition particle-docking protein FtsY [Oceanibulbus
           indolifex HEL-45]
 gi|161380828|gb|EDQ05238.1| signal recognition particle-docking protein FtsY [Oceanibulbus
           indolifex HEL-45]
          Length = 461

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/275 (44%), Positives = 189/275 (68%), Gaps = 1/275 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LE+LLI +D+GV  A ++   +   R+ K +SV  +   ++  + +++ P
Sbjct: 186 RTLDDDMLEQLEELLISADMGVDTALRVTANMAEGRFGKKLSVGEIKQLLATEVSRIMEP 245

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    +S  P V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA++QL
Sbjct: 246 VARPLPI-YSKTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKKVVIAAGDTFRAAAVEQL 304

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W +R     + +  GSD A+LA++A  +AQ +  D+L+IDTAGRL N   LM  + K+
Sbjct: 305 QVWGERAGVPVLTAAHGSDPASLAFDAMGRAQEEGADLLLIDTAGRLQNRGDLMEELAKI 364

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ D  APH+ L VLDATTGQNAL QV++F  ++  +GL+MTK+DGTA+GG L+ +
Sbjct: 365 VRVIRKKDETAPHNTLLVLDATTGQNALNQVKVFQEISDVSGLVMTKLDGTAKGGVLVAL 424

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +P++ +GVGE I+DL PF   +F+A + G 
Sbjct: 425 ADRFGLPIHAVGVGEQIDDLSPFDPDEFAAALVGI 459


>gi|291279724|ref|YP_003496559.1| signal recognition particle receptor FtsY [Deferribacter
           desulfuricans SSM1]
 gi|290754426|dbj|BAI80803.1| signal recognition particle receptor FtsY [Deferribacter
           desulfuricans SSM1]
          Length = 388

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/300 (47%), Positives = 201/300 (67%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           ++++L  G + TS KL  GI  I +  + +D+ + EELE+L + SDIG+    KI++ + 
Sbjct: 86  FLKRLRNGLSKTSNKLVGGIETIFLGKKEIDEELLEELEELFVTSDIGINTTLKIIDAV- 144

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTT 126
                +D   ++VL +  +L + +   + +  N D S      +P+VILVVGVNGVGKTT
Sbjct: 145 -----RDEVSRKVLKNPEDLKNSIKNKIFEILNIDNSLKQVDEKPYVILVVGVNGVGKTT 199

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            I K++K   D GLK MLAAGDTFR+AAIDQL++WADR     V  + GSD AA+ Y+A 
Sbjct: 200 TIAKIAKMFKDNGLKTMLAAGDTFRAAAIDQLQVWADRVDVPIVKQQEGSDPAAVIYDAV 259

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+AK  DVLI DTAGRLH    LM  + K++RV+K+  P+APH +L VLDAT+GQNA+
Sbjct: 260 VSAKAKGYDVLIADTAGRLHTKYNLMNELKKIVRVVKKEMPNAPHEILLVLDATSGQNAI 319

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F+   G TG+++TK+DGTA+GG ++ IV   KIPV F+G GEG++DL+PF AK F
Sbjct: 320 NQAKIFNEAVGVTGIVLTKLDGTAKGGVIVGIVDELKIPVKFIGFGEGMDDLKPFDAKTF 379


>gi|302381440|ref|YP_003817263.1| signal recognition particle-docking protein FtsY [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192068|gb|ADK99639.1| signal recognition particle-docking protein FtsY [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 312

 Score =  252 bits (644), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/304 (42%), Positives = 193/304 (63%), Gaps = 1/304 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W ++L+ G A +S ++ E +        L +   + LE+ L+ SD+G A   +IV     
Sbjct: 9   WFQRLSAGLARSSQQMTETVVGTFVKEPLSEAALDRLEEHLLESDLGPAATDRIVARFRE 68

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKL 131
            R+ K    + V   ++E +   L+P    F+      +P+V+L VGVNG GKTT +GK+
Sbjct: 69  LRFGKVSDEREVKEALAEAVAAELLPRQATFDPLSEGIKPYVVLFVGVNGSGKTTTLGKI 128

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  ++  G +VM+ AGDTFR+AA +QLK+WA+R  ADF     G+D A LA++A+ +A+A
Sbjct: 129 AADLTGKGARVMIVAGDTFRAAAREQLKVWAERAGADFESRRDGADPAGLAFDAYTKARA 188

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV++IDTAGRL N S LM  + K++RVLK++DP APH  L VLDAT G+NAL Q ++
Sbjct: 189 ENYDVILIDTAGRLQNKSALMDELLKIVRVLKKIDPDAPHETLLVLDATVGRNALAQEQI 248

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A  +GL+MTK+DGTARGG L+P+      P+  +GVGEGI+DL+PF A+ F+  + 
Sbjct: 249 FGRTAFVSGLVMTKLDGTARGGVLVPVAQASDAPIKLIGVGEGIDDLQPFDARAFARSLV 308

Query: 312 GCLD 315
           G  D
Sbjct: 309 GLED 312


>gi|262375215|ref|ZP_06068448.1| signal recognition particle-docking protein FtsY [Acinetobacter
           lwoffii SH145]
 gi|262309469|gb|EEY90599.1| signal recognition particle-docking protein FtsY [Acinetobacter
           lwoffii SH145]
          Length = 367

 Score =  252 bits (644), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 139/300 (46%), Positives = 195/300 (65%), Gaps = 2/300 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  ++  G   T   L +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I+  L 
Sbjct: 63  FFSRMKVGLTKTRKNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGVEATKTIIANLT 122

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +    D+     LY  + E +  +L P  KP + D +  P+VILVVGVNGVGKTT IGK
Sbjct: 123 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILVVGVNGVGKTTTIGK 182

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K++   G  VMLAAGDTFR+AA +QL+IW +R +   V    G+D+A++ ++AF+ A+
Sbjct: 183 LAKRLQGEGKTVMLAAGDTFRAAATEQLQIWGERNNIAVVAQGHGADSASVIFDAFESAR 242

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK VDVLI DTAGRLHN   LM  + K+ RV++++D  APH V+ V+DA TGQNA+ QVE
Sbjct: 243 AKGVDVLIADTAGRLHNKGHLMQELTKVKRVMQKIDATAPHEVMLVVDAGTGQNAINQVE 302

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           MF    G TGL +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF AK F A +
Sbjct: 303 MFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 362


>gi|26991787|ref|NP_747212.1| signal recognition particle-docking protein FtsY [Pseudomonas
           putida KT2440]
 gi|24986898|gb|AAN70676.1|AE016711_4 signal recognition particle receptor FtsY [Pseudomonas putida
           KT2440]
          Length = 494

 Score =  252 bits (644), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/296 (43%), Positives = 191/296 (64%), Gaps = 2/296 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   ++ +DD + +E+E  L+ +D+GV     IV+ L 
Sbjct: 190 FFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSAIVQNLT 249

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   K ++    LY  + E +  +L P+ +P N    ++P+VILVVGVNG GKTT IGK
Sbjct: 250 QKVARKQLADADALYKSLQEELAALLRPVEQPLNVQAQNKPYVILVVGVNGAGKTTTIGK 309

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A+
Sbjct: 310 LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAK 369

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q +
Sbjct: 370 ARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDVEAPHEVLLVLDAGTGQNAISQAK 429

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F+     TGL +TK+DGTA+GG +  +     IP+ F+GVGEGI+DL  F A+ F
Sbjct: 430 YFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPF 485


>gi|226329396|ref|ZP_03804914.1| hypothetical protein PROPEN_03301 [Proteus penneri ATCC 35198]
 gi|225202582|gb|EEG84936.1| hypothetical protein PROPEN_03301 [Proteus penneri ATCC 35198]
          Length = 541

 Score =  252 bits (644), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 134/295 (45%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   L  G   +   +++DD + EELE+ L+ +D+G+    KI+  L  
Sbjct: 239 FFSRLKKGLLKTRQNLGSGFIGLFRGKKIDDELFEELEEQLLIADVGMETTTKIITSLTK 298

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               KD+     LY  + E + ++L  + KP N +   +P VIL+VGVNGVGKTT IGKL
Sbjct: 299 HATHKDLKDAEALYGKLREEMGEILTKVDKPLNIE-GKKPFVILMVGVNGVGKTTTIGKL 357

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D A++ ++A + AQA
Sbjct: 358 ARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQHTGADPASVIFDAIQSAQA 417

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 418 KGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTLDASTGQNAVSQAKL 477

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TGL +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 478 FNETVGLTGLTLTKLDGTAKGGVIFSIADQFSIPIRYIGVGEGIEDLRPFKADDF 532


>gi|220936146|ref|YP_002515045.1| signal recognition particle-docking protein FtsY [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219997456|gb|ACL74058.1| signal recognition particle-docking protein FtsY [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 329

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 135/301 (44%), Positives = 198/301 (65%), Gaps = 2/301 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66
           ++S     +L KG + T   L EG+  ++  R+ +DD + EELE  L+ +D+GV   Q+I
Sbjct: 19  AQSEGLFSRLRKGLSKTGQALTEGMATLVMGRKAIDDELLEELETRLLMADVGVEATQRI 78

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++ L  +   K+++    L+  + E + ++L+P++ P   D S +P VILVVG+NG GKT
Sbjct: 79  LDGLTRRVARKELTDADALFKALHEAMTEILVPVAHPLQIDASKKPFVILVVGINGAGKT 138

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K++ + G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A
Sbjct: 139 TTIGKLAKRLQNEGRSVMLAAGDTFRAAAVEQLQVWGERNRIPVITQGKGADSASVIYDA 198

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ VDVLI DTAGRLH  + LM  + K+ RV++RLDP APH  L V+DA TGQNA
Sbjct: 199 VQAAKARGVDVLIADTAGRLHTQTNLMEEMKKVRRVIQRLDPDAPHETLLVVDAGTGQNA 258

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q   FH     TGL +TK+DGTA+GG +  +     IP+ F+GVGEGI+DL  F A D
Sbjct: 259 LNQAREFHQAVNLTGLAVTKLDGTAKGGIVFAMAERMGIPIRFIGVGEGIDDLRTFRADD 318

Query: 306 F 306
           F
Sbjct: 319 F 319


>gi|88858436|ref|ZP_01133078.1| Cell division transporter substrate-binding protein FtsY
           [Pseudoalteromonas tunicata D2]
 gi|88820053|gb|EAR29866.1| Cell division transporter substrate-binding protein FtsY
           [Pseudoalteromonas tunicata D2]
          Length = 565

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 126/296 (42%), Positives = 189/296 (63%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L K    T   +  G  +I S +++DD + EELE  L+ +D+GV    K++  L 
Sbjct: 260 SFFSRLKKSLIKTKQSIGSGFINIFSGKKIDDELFEELETQLLTADLGVDTTLKLIARLT 319

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K +     LYD+  + + +ML    +  + + +  P VIL+VGVNGVGKTT IGK
Sbjct: 320 EAADRKQLKDGDALYDLLKQEMAQMLKSAEQALDTEKATGPFVILMVGVNGVGKTTTIGK 379

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++AF+ A+
Sbjct: 380 LAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVIFDAFQAAK 439

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+KVD+LI DTAGRL N   LM  + K+ RV+K+LDP APH V+  +DA TGQNA+ QV+
Sbjct: 440 ARKVDILIADTAGRLQNKDNLMQELEKIARVMKKLDPDAPHEVMLTIDAGTGQNAISQVD 499

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F+   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI+DL  F + +F
Sbjct: 500 LFNKAVGLTGISLTKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIDDLRAFKSDEF 555


>gi|239994821|ref|ZP_04715345.1| signal recognition particle GTPase [Alteromonas macleodii ATCC
           27126]
          Length = 382

 Score =  251 bits (642), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 128/313 (40%), Positives = 196/313 (62%), Gaps = 6/313 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S   +L +  + T   L  GI  +   + +DD + E+LE  L+ +D+G+   QKI++ L 
Sbjct: 69  SLFARLKESLSRTKENLGSGIVSLFKGKTIDDELYEDLETQLLVADVGMDTTQKIIDHLT 128

Query: 72  TKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKT 125
                KD+     L D+     S ++ ++  PLS+     D S  P VIL+VGVNGVGKT
Sbjct: 129 DSASRKDLKDAEALLDIMKQQMSGMLSQVNQPLSEVMQAHDSSEGPFVILMVGVNGVGKT 188

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A
Sbjct: 189 TTIGKLAKQFQQEGKKVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVLYDA 248

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+++  D+LI DTAGRL N + LM  + K++RV+K+++P+APH V+  LDA TGQNA
Sbjct: 249 LEAAKSRGTDILIADTAGRLQNKNNLMEELKKVVRVMKKINPNAPHEVMLTLDAGTGQNA 308

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q ++F+   G TG+ +TK+DGTA+GG +  I    KIP+ ++GVGE I+DL  F  ++
Sbjct: 309 ISQAKLFNEAVGLTGITLTKLDGTAKGGVIFSIADKFKIPIRYIGVGESIDDLRQFDGQE 368

Query: 306 FSAVITGCLDYGE 318
           F   +   +D  E
Sbjct: 369 FIDALFSEMDTPE 381


>gi|149378431|ref|ZP_01896125.1| signal recognition particle-docking protein FtsY [Marinobacter
           algicola DG893]
 gi|149357281|gb|EDM45809.1| signal recognition particle-docking protein FtsY [Marinobacter
           algicola DG893]
          Length = 400

 Score =  251 bits (641), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 129/302 (42%), Positives = 197/302 (65%), Gaps = 8/302 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +S   ++ KG   T   L  G  D+ S  +++D+ + EE+E  L+ +D+GV    +I+E
Sbjct: 91  QVSVFERIRKGLGKTRANLTGGFADLFSIGKKVDEDLLEEIETTLLMADVGVTATSEIIE 150

Query: 69  EL---LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            L   L +   KD  ++++ L D    +H +L  ++KP   D S +P+VIL+VGVNGVGK
Sbjct: 151 SLTDKLERNQLKDGEALRKALRDE---LHGLLADVTKPLEIDASKKPYVILMVGVNGVGK 207

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K     G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ ++
Sbjct: 208 TTTIGKLTKLFQRDGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIFD 267

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + AQ++ VDV+I DTAGRL N   LM+ + K++RV+K+LD  APH V+ VLDA TGQN
Sbjct: 268 AVQSAQSRGVDVVIADTAGRLQNKDNLMSELEKVVRVMKKLDESAPHEVMLVLDAGTGQN 327

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q ++F    G +G+ +TK+DGTA+GG +  I    ++P+ ++GVGE ++DL  F A+
Sbjct: 328 ALSQAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRYIGVGEQVDDLRSFDAR 387

Query: 305 DF 306
            F
Sbjct: 388 TF 389


>gi|114049331|ref|YP_739881.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           MR-7]
 gi|113890773|gb|ABI44824.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           MR-7]
          Length = 584

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 128/296 (43%), Positives = 196/296 (66%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ L 
Sbjct: 277 SFFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTSRLIQSLT 336

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K +     LYD+  + + K L P++ P   + ++ P+VIL+VGVNGVGKTT IGK
Sbjct: 337 EHASRKQLKDAEALYDLLRDEMQKTLDPVAIPLVPENANGPYVILMVGVNGVGKTTTIGK 396

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + A+
Sbjct: 397 LAKQYQRQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQAAK 456

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K+DVLI DTAGRL N S LM  + K++RV+K+LDP APH V+  LDA+TGQNA+ Q +
Sbjct: 457 ARKIDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAQ 516

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F    G TG+ ++K+DGTA+GG +  I    KIP+ ++GVGE I+DL  F +K+F
Sbjct: 517 LFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRTFNSKEF 572


>gi|83944907|ref|ZP_00957273.1| probable cell division protein [Oceanicaulis alexandrii HTCC2633]
 gi|83851689|gb|EAP89544.1| probable cell division protein [Oceanicaulis alexandrii HTCC2633]
          Length = 437

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 128/291 (43%), Positives = 193/291 (66%), Gaps = 1/291 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E   +  +L  G   +S +L +G++ + + R+LD    +ELE+LLI +DIG   A K+V 
Sbjct: 132 EKKGFFARLAAGLKKSSSRLSDGLSSLFTQRKLDQEALDELEELLIAADIGAPTAAKVVA 191

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            L   R+ KDVS   +   +++++ + L P  +P +      P V++ VGVNG GKTT +
Sbjct: 192 RLAKDRFDKDVSDLEIREALADVVAETLQPYEQPLDM-TGATPSVVVFVGVNGSGKTTTL 250

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++ KM+  G  V+ AAGDTFR+AA++QL++W++R  A F+  E+G+DAA LAY+A +Q
Sbjct: 251 GKIAVKMTREGADVITAAGDTFRAAAVEQLQVWSERAGAKFLSRELGADAAGLAYDAIQQ 310

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +K D ++IDTAGRL N + LM  + K+IRV++++D  APH VL VLD T G NA+ Q
Sbjct: 311 GRTEKSDAVLIDTAGRLQNKAELMDELRKIIRVIRKIDDTAPHHVLLVLDGTVGSNAISQ 370

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            E F   A  TG+IMTK+DGTA+GG L+ +    K+P++F+GVGEG  DL+
Sbjct: 371 AEAFMETAHVTGVIMTKLDGTAKGGALVQVAERFKLPIHFIGVGEGEADLQ 421


>gi|50085394|ref|YP_046904.1| cell division protein [Acinetobacter sp. ADP1]
 gi|49531370|emb|CAG69082.1| cell division protein [Acinetobacter sp. ADP1]
          Length = 373

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 135/300 (45%), Positives = 197/300 (65%), Gaps = 2/300 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  ++ +G   T   L +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I+  L 
Sbjct: 69  FFSRMKQGLTKTRRNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLT 128

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVGKTT IGK
Sbjct: 129 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKTPYVILMVGVNGVGKTTTIGK 188

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K++   G KVMLAAGDTFR+AA +QL+IW +R +   V    G+D+A++ ++AF+ A+
Sbjct: 189 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNNISVVAQGHGADSASVIFDAFESAR 248

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQNA+ QV+
Sbjct: 249 AKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQ 308

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF AK F A +
Sbjct: 309 EFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 368


>gi|104779581|ref|YP_606079.1| cell division protein FtsY [Pseudomonas entomophila L48]
 gi|95108568|emb|CAK13262.1| cell division protein FtsY [Pseudomonas entomophila L48]
          Length = 524

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/296 (43%), Positives = 191/296 (64%), Gaps = 2/296 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   ++ +DD + +E+E  L+ +D+GV     IV+ L 
Sbjct: 218 FFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSTIVQNLT 277

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   K ++    LY  + E +  +L P+ +P   +  ++P+VILVVGVNG GKTT IGK
Sbjct: 278 QKVARKQLADADALYKSLQEELAALLRPVEQPLKIEAQNKPYVILVVGVNGAGKTTTIGK 337

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A+
Sbjct: 338 LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAK 397

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q +
Sbjct: 398 ARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAISQAK 457

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F+     TGL +TK+DGTA+GG +  +     IP+ F+GVGEGI+DL  F A+ F
Sbjct: 458 YFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPF 513


>gi|91794852|ref|YP_564503.1| signal recognition particle-docking protein FtsY [Shewanella
           denitrificans OS217]
 gi|91716854|gb|ABE56780.1| signal recognition particle-docking protein FtsY [Shewanella
           denitrificans OS217]
          Length = 487

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 135/305 (44%), Positives = 195/305 (63%), Gaps = 3/305 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            QK   E L    +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV  
Sbjct: 158 QQKPVKEGL--FARLKRGLMRTSENIGSGFIGLFKGKKIDDDLFEELEEQLLIADVGVET 215

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             K++ +L      + +     LYD+  + + KML P++ P   D S  P VIL+VGVNG
Sbjct: 216 TTKLIAKLTEHASRRQLKDAEALYDLMRDEMQKMLEPVAIPLVPDNSEGPFVILMVGVNG 275

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++
Sbjct: 276 VGKTTTIGKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASV 335

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++AF+ A+++KVDVLI DTAGRL N S LM  + K++RV+K+LD +APH V+  LDA+T
Sbjct: 336 LFDAFQAAKSRKVDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDANAPHEVMLTLDAST 395

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q ++F    G TG+ +TK+DGTA+GG +  I     IP+  +GVGE I+DL  F
Sbjct: 396 GQNAISQAQLFQEAVGVTGITLTKLDGTAKGGVIFAIADKFSIPIRHIGVGEQIDDLRTF 455

Query: 302 VAKDF 306
            A DF
Sbjct: 456 NAADF 460


>gi|170719541|ref|YP_001747229.1| signal recognition particle-docking protein FtsY [Pseudomonas
           putida W619]
 gi|169757544|gb|ACA70860.1| signal recognition particle-docking protein FtsY [Pseudomonas
           putida W619]
          Length = 514

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/296 (43%), Positives = 190/296 (64%), Gaps = 2/296 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   ++ +DD + +E+E  L+ +D+GV     IV+ L 
Sbjct: 208 FFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSTIVQNLT 267

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   K ++    LY  + E +  +L P+ +P      ++P+VILVVGVNG GKTT IGK
Sbjct: 268 QKVARKQLADADALYKSLQEELAALLRPVEQPLKIQAQNKPYVILVVGVNGAGKTTTIGK 327

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A+
Sbjct: 328 LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAK 387

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q +
Sbjct: 388 ARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAISQAK 447

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F+     TGL +TK+DGTA+GG +  +     IP+ F+GVGEGI+DL  F A+ F
Sbjct: 448 YFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPF 503


>gi|326797249|ref|YP_004315069.1| signal recognition particle-docking protein FtsY [Marinomonas
           mediterranea MMB-1]
 gi|326548013|gb|ADZ93233.1| signal recognition particle-docking protein FtsY [Marinomonas
           mediterranea MMB-1]
          Length = 434

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 136/310 (43%), Positives = 203/310 (65%), Gaps = 8/310 (2%)

Query: 3   NQKVASE--SLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIG 59
           NQ+V  E  +LSW  ++  G A T   L  G++ ++  S+++DD + EELE  L+ +D+G
Sbjct: 119 NQEVPDEKPTLSWRERIQSGLARTRSGLGNGLSSLVLGSKKVDDDLLEELETQLLTADVG 178

Query: 60  VAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           +   Q +++   E L ++  KD +   ++  +   ++ +L    KP + D +  P VIL+
Sbjct: 179 IDATQTLIDGLTEKLNRKELKDSNA--LMSSLKADMNDILEISEKPLSLDKADGPFVILM 236

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+KK    G  VMLAAGDTFR+AA++QL++W DR     V    G+
Sbjct: 237 VGVNGVGKTTTIGKLAKKYQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNQVPVVAQHTGA 296

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D+A++ Y+A + A+AK VDV+I DTAGRL N + LM+ + K++RV+K+LD  APH V+ V
Sbjct: 297 DSASVIYDAIESAKAKSVDVVIADTAGRLQNKANLMSELEKVVRVMKKLDVSAPHEVMLV 356

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA TGQNAL Q ++F    G +G+ +TK+DGTA+GG +  I     +P+ ++GVGE   
Sbjct: 357 LDAGTGQNALSQAKLFTEAVGVSGITLTKLDGTAKGGIIFAIAKQFGLPIRYIGVGEQAE 416

Query: 297 DLEPFVAKDF 306
           DL PFVA++F
Sbjct: 417 DLRPFVAQEF 426


>gi|209696302|ref|YP_002264233.1| cell division protein FtsY [Aliivibrio salmonicida LFI1238]
 gi|208010256|emb|CAQ80587.1| cell division protein FtsY [Aliivibrio salmonicida LFI1238]
          Length = 410

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 130/296 (43%), Positives = 198/296 (66%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +    T   +  G   + S +++D+ + EELE+ L+ +D+G+    KI+  L 
Sbjct: 106 SFFARLKRSLQRTKENIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMDTTVKIINSLT 165

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   +D+     LY +  E + ++L+ + +P   D  + PHVIL+VGVNGVGKTT IGK
Sbjct: 166 EKASKRDLKDGEALYGLLKEEMAEILVKVEQPLVIDEKNSPHVILMVGVNGVGKTTTIGK 225

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+  + G  V+LAAGDTFR+AA++QL++W  R     +    G+D+A++ Y+A + A+
Sbjct: 226 LAKQFQNDGKSVILAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASVIYDAIEAAK 285

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+KVDV+I DTAGRL N S LM  + K++RV++++DP APH V+  LDA TGQNA+ Q +
Sbjct: 286 ARKVDVVIADTAGRLQNKSNLMEELRKIVRVMQKIDPSAPHEVMLTLDAGTGQNAISQAK 345

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PFVA+DF
Sbjct: 346 LFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRYIGVGEGIDDLRPFVAQDF 401


>gi|330813436|ref|YP_004357675.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486531|gb|AEA80936.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 302

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 126/304 (41%), Positives = 191/304 (62%), Gaps = 8/304 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +++ L +G   +S  + EG+++I    + ++ + EE+ED +I+ D G+ VA K    L
Sbjct: 1   MGFLKNLKEGLFKSSSNISEGVSNIFLKSKPNEKILEEIEDFMIQCDFGIDVASKFKLIL 60

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPF---NWDFSHRPHVILVVGVNGVGKTT 126
             K+++++   +   Y++ SE + K+L PL K       DF      I+V GVNG GKTT
Sbjct: 61  ANKKFSEEELKKENFYNIFSEEVIKILQPLEKKIVNTESDF----KTIIVCGVNGTGKTT 116

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKLSK   +   KV++ A DTFR+AAIDQLK+W D+ + + + SE+G+D A++A++  
Sbjct: 117 TIGKLSKLFKNHNKKVVVGAADTFRAAAIDQLKVWCDKNNTEMIQSEVGADPASVAFKTL 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+    D+ IIDTAGRL N   LM    K++RVLK++DP AP     VLDATTGQNA+
Sbjct: 177 EYAKNNNKDLCIIDTAGRLQNKKNLMEEFAKIVRVLKKIDPDAPQETWIVLDATTGQNAI 236

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q+E F  +   TG++MTK+DGTA+GG L+ I    KIP+  +GVGE   DL  F+A ++
Sbjct: 237 TQIEEFQKITPLTGIVMTKLDGTAKGGILVAIADRFKIPIVAIGVGEKEEDLNQFIASEY 296

Query: 307 SAVI 310
           S  +
Sbjct: 297 SQAL 300


>gi|148978744|ref|ZP_01815124.1| cell division protein FtsY [Vibrionales bacterium SWAT-3]
 gi|145962165|gb|EDK27449.1| cell division protein FtsY [Vibrionales bacterium SWAT-3]
          Length = 411

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/296 (43%), Positives = 194/296 (65%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+E L 
Sbjct: 107 SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMNTTVKIIENLT 166

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K    D+     LY +  E +  +L  + +P   D +  P+VIL+VGVNGVGKTT IGK
Sbjct: 167 EKASRNDLKDGEALYGLLKEEMADILSQVEQPLVVDTTKTPYVILMVGVNGVGKTTTIGK 226

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+  + G KVMLAAGDTFR+AA++QL++W  R     +    G+D+A++ Y+A + A+
Sbjct: 227 LAKQFQNEGKKVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASVIYDAIEAAK 286

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VDV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 287 ARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 346

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PF +KDF
Sbjct: 347 LFSEVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRYIGVGEGIDDLRPFESKDF 402


>gi|327482688|gb|AEA85998.1| signal recognition particle receptor FtsY [Pseudomonas stutzeri DSM
           4166]
          Length = 442

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/302 (43%), Positives = 192/302 (63%), Gaps = 2/302 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           A   L +  +L +G + TS  + EG+  + +  + +DD + +ELE  L+ +D+GV     
Sbjct: 130 APAKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLDELETRLLTADVGVEATTA 189

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L  +   K+++    LY  + E +  +L P+ +P   D S RP+VILVVGVNGVGK
Sbjct: 190 IMQNLTRRVSRKELADSGALYTALQEELVGLLKPVEQPLAVDASKRPYVILVVGVNGVGK 249

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++
Sbjct: 250 TTTIGKLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNGIPVIAQHTGADSASVIFD 309

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQN
Sbjct: 310 AVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVMGKLDESAPHEVLLVLDAGTGQN 369

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q   F+     TGL +TK+DGTA+GG +  +      P+ ++GVGEGI+DL  F A 
Sbjct: 370 AINQTRQFNQAVELTGLALTKLDGTAKGGVIFALAKQFGTPIRYIGVGEGIDDLRTFEAD 429

Query: 305 DF 306
            F
Sbjct: 430 AF 431


>gi|238789411|ref|ZP_04633197.1| Cell division protein ftsY [Yersinia frederiksenii ATCC 33641]
 gi|238722554|gb|EEQ14208.1| Cell division protein ftsY [Yersinia frederiksenii ATCC 33641]
          Length = 520

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 128/296 (43%), Positives = 191/296 (64%), Gaps = 4/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + +ELE+ L+ +D+GV   +KI+  L  
Sbjct: 218 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFDELEEQLLIADVGVETTRKIITSLTE 277

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
               K +     LY  + E + ++L  + KP   D S + P+VIL+VGVNGVGKTT IGK
Sbjct: 278 HASRKQLKDAEALYGKLKEEMSEILSKVDKPL--DVSGKSPYVILMVGVNGVGKTTTIGK 335

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A++ ++A + A+
Sbjct: 336 LARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQAAK 395

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q +
Sbjct: 396 ARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAK 455

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 456 LFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 511


>gi|303250568|ref|ZP_07336765.1| cell division protein FtsY-like protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252987|ref|ZP_07534874.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650556|gb|EFL80715.1| cell division protein FtsY-like protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859516|gb|EFM91542.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 581

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 192/295 (65%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+    K++  L  
Sbjct: 278 FFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTTTKVINNLTQ 337

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +    +LY   +L + ++L P+S+P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 338 HASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGVGKTTTIGKL 397

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ ++A + A +
Sbjct: 398 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAS 457

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 458 KGIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKL 517

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF A++F
Sbjct: 518 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 572


>gi|126664539|ref|ZP_01735523.1| signal recognition particle-docking protein FtsY [Marinobacter sp.
           ELB17]
 gi|126630865|gb|EBA01479.1| signal recognition particle-docking protein FtsY [Marinobacter sp.
           ELB17]
          Length = 406

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/303 (41%), Positives = 199/303 (65%), Gaps = 10/303 (3%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +S + ++ +G   T      G+ D+ S+ +++D  + EE+E  L+ +D+GV    +I+E
Sbjct: 102 QISVLERIRRGLGKTRASFTGGLADMFSAGKKIDADLLEEIETTLLMADVGVTATTEIIE 161

Query: 69  ELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            L T++  +D      ++++ L D    +H +L  +SKP   D   +P+VIL+VGVNGVG
Sbjct: 162 SL-TEKLKRDQLKDGEALRQALRD---QLHGLLKDVSKPLVIDAQTKPYVILMVGVNGVG 217

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+KK  D G+ V+LAAGDTFR+AA++QL++W DR     +    G+D+A++ +
Sbjct: 218 KTTTIGKLTKKFQDEGMSVLLAAGDTFRAAAMEQLQVWGDRNKVPVIAQHTGADSASVIF 277

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+++ +DV+I DTAGRL N   LM+ + K++RV+K+LD  APH V+ VLDA TGQ
Sbjct: 278 DAIQSAKSRGIDVVIADTAGRLQNKDNLMSELEKVVRVMKKLDTAAPHEVMLVLDAGTGQ 337

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q ++F    G +G+ +TK+DGTA+GG +  I    ++P+ F+G+GE + DL  F A
Sbjct: 338 NALNQAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRFIGIGEQVEDLRSFDA 397

Query: 304 KDF 306
           + F
Sbjct: 398 RAF 400


>gi|146284304|ref|YP_001174457.1| signal recognition particle receptor FtsY [Pseudomonas stutzeri
           A1501]
 gi|145572509|gb|ABP81615.1| signal recognition particle receptor FtsY [Pseudomonas stutzeri
           A1501]
          Length = 477

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/302 (43%), Positives = 192/302 (63%), Gaps = 2/302 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           A   L +  +L +G + TS  + EG+  + +  + +DD + +ELE  L+ +D+GV     
Sbjct: 165 APAKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLDELETRLLTADVGVEATTA 224

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L  +   K+++    LY  + E +  +L P+ +P   D S RP+VILVVGVNGVGK
Sbjct: 225 IMQNLTRRVSRKELADSGALYTALQEELVGLLKPVEQPLAIDASKRPYVILVVGVNGVGK 284

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++
Sbjct: 285 TTTIGKLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNGIPVIAQHTGADSASVIFD 344

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQN
Sbjct: 345 AVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVMGKLDESAPHEVLLVLDAGTGQN 404

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q   F+     TGL +TK+DGTA+GG +  +      P+ ++GVGEGI+DL  F A 
Sbjct: 405 AINQTRQFNQAVELTGLALTKLDGTAKGGVIFALAKQFGTPIRYIGVGEGIDDLRTFEAD 464

Query: 305 DF 306
            F
Sbjct: 465 AF 466


>gi|167036150|ref|YP_001671381.1| signal recognition particle-docking protein FtsY [Pseudomonas
           putida GB-1]
 gi|166862638|gb|ABZ01046.1| signal recognition particle-docking protein FtsY [Pseudomonas
           putida GB-1]
          Length = 510

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/296 (43%), Positives = 190/296 (64%), Gaps = 2/296 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   ++ +DD + +E+E  L+ +D+GV     IV+ L 
Sbjct: 206 FFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSAIVQNLT 265

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   K ++    LY  + E +  +L P+ +P      ++P+VILVVGVNG GKTT IGK
Sbjct: 266 QKVARKQLADADALYKSLQEELAALLRPVEQPLKVQAQNKPYVILVVGVNGAGKTTTIGK 325

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A+
Sbjct: 326 LAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAK 385

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q +
Sbjct: 386 ARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAISQAK 445

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F+     TGL +TK+DGTA+GG +  +     IP+ F+GVGEGI+DL  F A+ F
Sbjct: 446 YFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPF 501


>gi|261819462|ref|YP_003257568.1| cell division protein FtsY [Pectobacterium wasabiae WPP163]
 gi|261603475|gb|ACX85961.1| signal recognition particle-docking protein FtsY [Pectobacterium
           wasabiae WPP163]
          Length = 471

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/297 (42%), Positives = 191/297 (64%), Gaps = 6/297 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-- 70
           +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   +KI+  L  
Sbjct: 169 FFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLIADVGVETTRKIISSLTE 228

Query: 71  -LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +++R  KD     +   + E + ++L  +  P N +    P+VIL+VGVNGVGKTT IG
Sbjct: 229 HVSRRQLKDADT--LFVKLKEEMAEILAKVDAPLNIE-GKTPYVILMVGVNGVGKTTTIG 285

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + A
Sbjct: 286 KMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSASVIFDAIQAA 345

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q 
Sbjct: 346 KARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAVSQA 405

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 406 KLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLRPFKADDF 462


>gi|320154974|ref|YP_004187353.1| signal recognition particle receptor protein FtsY subunit alpha
           [Vibrio vulnificus MO6-24/O]
 gi|319930286|gb|ADV85150.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Vibrio vulnificus MO6-24/O]
          Length = 395

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/304 (42%), Positives = 198/304 (65%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 83  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 142

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+E L  K   +D+     LY +  E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 143 LKIIENLTEKASRRDLKDGEALYGLLKEEMAEILSKVEQPLQVDSSKTPYVILMVGVNGV 202

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+  + G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 203 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 262

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 263 YDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 322

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 323 QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFE 382

Query: 303 AKDF 306
            ++F
Sbjct: 383 TQEF 386


>gi|218198435|gb|EEC80862.1| hypothetical protein OsI_23481 [Oryza sativa Indica Group]
          Length = 473

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 128/299 (42%), Positives = 189/299 (63%), Gaps = 10/299 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   +KI+  L  
Sbjct: 171 FFARLKRSLLKTKQNLGSGFMGLFRGKKIDDDLFDELEEQLLIADVGVDTTRKIITSLTQ 230

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
               K +     LY     ++SE++ K+  PL    N      P+VIL+VGVNGVGKTT 
Sbjct: 231 HASRKQLKDAEALYGKLKEEMSEILAKVDQPLDVSGN-----TPYVILMVGVNGVGKTTT 285

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A +
Sbjct: 286 IGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSASVIFDAVQ 345

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ 
Sbjct: 346 AAKARGIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDDQAPHEVMLTLDASTGQNAVS 405

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 406 QAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 464


>gi|332142894|ref|YP_004428632.1| signal recognition particle GTPase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|332143061|ref|YP_004428799.1| signal recognition particle GTPase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552916|gb|AEA99634.1| signal recognition particle GTPase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553083|gb|AEA99801.1| signal recognition particle GTPase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 541

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 126/309 (40%), Positives = 193/309 (62%), Gaps = 6/309 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q    E  S   +L +  + T   L  GI  +   + +DD + E+LE  L+ +D+G+   
Sbjct: 220 QDKPKEKKSLFARLRESLSRTKENLGSGIVSLFKGKAIDDELYEDLETQLLVADVGMDTT 279

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFN-----WDFSHRPHVILVV 117
           QKI+  L      KD+     L ++  + +  ML  +++P +      D S  P VIL+V
Sbjct: 280 QKIITHLTDSASRKDLKDAEALLEILKQRMSGMLSEVNQPLSDVMQAHDASEGPFVILMV 339

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D
Sbjct: 340 GVNGVGKTTTIGKLAKQFQQQGKKVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGAD 399

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           +A++ Y+A + A+++  D+LI DTAGRL N + LM  + K++RV+K+++P+APH V+  L
Sbjct: 400 SASVLYDALEAAKSRGTDILIADTAGRLQNKNNLMEELKKVVRVMKKINPNAPHEVMLTL 459

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    KIP+ ++GVGE I+D
Sbjct: 460 DAGTGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFSIADKFKIPIRYIGVGESIDD 519

Query: 298 LEPFVAKDF 306
           L  F  ++F
Sbjct: 520 LRQFDGQEF 528


>gi|190150667|ref|YP_001969192.1| cell division protein FtsY [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264015|ref|ZP_07545615.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915798|gb|ACE62050.1| cell division protein FtsY-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306870626|gb|EFN02370.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 577

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 192/295 (65%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+    K++  L  
Sbjct: 274 FFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTTTKVINNLTQ 333

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +    +LY   +L + ++L P+S+P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 334 HASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGVGKTTTIGKL 393

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ ++A + A +
Sbjct: 394 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAS 453

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 454 KGIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKL 513

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF A++F
Sbjct: 514 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 568


>gi|322513516|ref|ZP_08066617.1| cell division protein FtsY [Actinobacillus ureae ATCC 25976]
 gi|322120669|gb|EFX92560.1| cell division protein FtsY [Actinobacillus ureae ATCC 25976]
          Length = 575

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 130/299 (43%), Positives = 195/299 (65%), Gaps = 9/299 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+    KI+  L  
Sbjct: 272 FFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLIADLGMPTTTKIINSLTQ 331

Query: 72  --TKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             TK+  KD  +  Q++  ++ E+    L P+S+P   D S +P+VIL+VGVNGVGKTT 
Sbjct: 332 HATKQQLKDADLLYQQLKVELGEV----LKPVSQPLEIDTSKKPYVILMVGVNGVGKTTT 387

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ ++A +
Sbjct: 388 IGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQ 447

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A +K +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ 
Sbjct: 448 SAASKGIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAIS 507

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF A++F
Sbjct: 508 QAKLFNEAVGLTGITLTKLDGTAKGGMIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 566


>gi|51473943|ref|YP_067700.1| cell division protein FtsY [Rickettsia typhi str. Wilmington]
 gi|81389950|sp|Q68VX4|FTSY_RICTY RecName: Full=Cell division protein ftsY homolog
 gi|51460255|gb|AAU04218.1| cell division protein FtsY [Rickettsia typhi str. Wilmington]
          Length = 303

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/303 (42%), Positives = 190/303 (62%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           ++   KL +  + TS  +  GI  I   ++LD     ELE+LLI SDI + V   I+E+ 
Sbjct: 2   ITIFNKLKQSLSKTSNTISTGIDKIFYKKKLDQTTLNELEELLISSDISITVVTHIIEKF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K +    V   +++LI + L     PF     ++ ++IL+ GVNGVGKTT IGK
Sbjct: 62  KNVKFDKTIDSDTVKEAIAKLIEQQLSKSEIPFTLS-ENKLNIILICGVNGVGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS   S  G KV +AA DTFR+AAI+QL  W DR +A  +  E+ +D A++AY A +++ 
Sbjct: 121 LSALYSAQGKKVAVAACDTFRAAAINQLSSWVDRANALLITGEVSADPASVAYRAIQESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
            + +D+L IDTAGRLHNN  LM  + K+++V+K+LD +AP HS+L ++DA TGQN   Q+
Sbjct: 181 KQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSIL-IIDAVTGQNTYNQI 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+ V   TGLI+TK+DG+A+ G L+  V    +P+YF+G+GE I DL+ F   DFS  
Sbjct: 240 EYFNDVTNLTGLIITKLDGSAKAGVLVGAVQKFNLPIYFIGIGEQIEDLKIFNRHDFSRS 299

Query: 310 ITG 312
           + G
Sbjct: 300 LVG 302


>gi|326423803|ref|NP_760099.2| signal recognition particle-docking protein FtsY [Vibrio vulnificus
           CMCP6]
 gi|319999171|gb|AAO09626.2| signal recognition particle-docking protein FtsY [Vibrio vulnificus
           CMCP6]
          Length = 395

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 129/304 (42%), Positives = 198/304 (65%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 83  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 142

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+E L  K   +D+     LY +  E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 143 LKIIENLTEKASRRDLKDGEALYGLLKEEMAEILSKVEQPLQVDSSKTPYVILMVGVNGV 202

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+  + G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 203 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 262

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 263 YDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 322

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 323 QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFE 382

Query: 303 AKDF 306
            ++F
Sbjct: 383 TQEF 386


>gi|301155326|emb|CBW14792.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Haemophilus parainfluenzae
           T3T1]
          Length = 485

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 121/295 (41%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + +ELE+ L+ +DIGV    KI++ L  
Sbjct: 180 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDDLFDELEEQLLIADIGVPTTNKIIKNLTE 239

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +    +LY   ++ + ++L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 240 HASRKQLQDAELLYQQLKVEMVEILKPVAQPLVIDTTKKPYVILMVGVNGVGKTTTIGKL 299

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K  + G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ ++A + A A
Sbjct: 300 ARKFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAA 359

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+++ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 360 RNIDILIADTAGRLQNKNNLMDELKKIVRVMRKYDETAPHEIMLTLDAGTGQNAISQAKL 419

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F    G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL  F A++F
Sbjct: 420 FDEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFNAEEF 474


>gi|78486281|ref|YP_392206.1| signal recognition particle-docking protein FtsY [Thiomicrospira
           crunogena XCL-2]
 gi|78364567|gb|ABB42532.1| signal recognition particle-docking protein FtsY [Thiomicrospira
           crunogena XCL-2]
          Length = 373

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 130/312 (41%), Positives = 195/312 (62%), Gaps = 7/312 (2%)

Query: 6   VASESLSWIR-----KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59
           V++ES    R     +L    + T     E +  ++  R+ +DD + +ELE +L+ +D+G
Sbjct: 55  VSTESQKTTRPGLFSRLKNSLSKTRKGFTENLATLVMGRKEIDDDLLDELEMILLTADVG 114

Query: 60  VAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           V     I++ L  +   K++   ++++  + + +  +L P+++P        P VIL+VG
Sbjct: 115 VEATDTIIQNLTGQVSRKELKEPEKLIQALKQQLETLLEPVTQPLVLPEKEGPFVILMVG 174

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+KK  + G  VMLAAGDTFR+AA++QL+ W +R     V  + G+D+
Sbjct: 175 VNGVGKTTTIGKLAKKFQNEGKSVMLAAGDTFRAAAVEQLQTWGERNQVPVVAQKTGADS 234

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A + A AK +DVLI DTAGRLH  S LM  + K+ RV++++D  APH V+ VLD
Sbjct: 235 AAVIFDAIQSATAKNIDVLIADTAGRLHTQSNLMEELKKVKRVIQKVDSSAPHEVMLVLD 294

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQNAL Q + F+     TGL +TK+DGTA+GG +  +     IPV F+GVGE I+DL
Sbjct: 295 AGTGQNALSQAQQFYEAVEITGLTLTKLDGTAKGGIIFALAEKLGIPVRFIGVGEAIDDL 354

Query: 299 EPFVAKDFSAVI 310
            PF A +FS  +
Sbjct: 355 RPFDANEFSEAL 366


>gi|254419772|ref|ZP_05033496.1| signal recognition particle-docking protein FtsY [Brevundimonas sp.
           BAL3]
 gi|196185949|gb|EDX80925.1| signal recognition particle-docking protein FtsY [Brevundimonas sp.
           BAL3]
          Length = 311

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 194/303 (64%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W ++L+ G + +S ++ + +        L +   E LE+ L+ SD+G A + +IVE    
Sbjct: 9   WFQRLSAGLSRSSKQMTDQVVASFVKEPLSEAALERLEEHLLESDLGPAASARIVERFRA 68

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            ++ KD     V   ++E +   L P    F+     +P+V+L VGVNG GKTT +GK++
Sbjct: 69  LKFGKDAQEHEVKEALAEAVAAELSPRQAAFDPLSGPKPYVVLFVGVNGSGKTTTLGKIA 128

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             ++  G KVM+ AGDTFR+AA +QLK+WADR  A+F     G+DAA L ++A+ +A+A+
Sbjct: 129 ADLTAKGAKVMIVAGDTFRAAAREQLKVWADRAGAEFESRRDGADAAGLVFDAYAKARAE 188

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV+++DTAGRL N S LM  + K++RVLK++DP APH  L VLDAT G+NAL Q ++F
Sbjct: 189 GFDVVLVDTAGRLQNKSALMDELLKIVRVLKKIDPAAPHDTLLVLDATVGRNALAQEQIF 248

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              A  TG++MTK+DGTARGG L+P+      P+  +GVGEGI+DL+PF A+ FS  + G
Sbjct: 249 GRTAFVTGIVMTKLDGTARGGVLVPVAQASDAPLMLIGVGEGIDDLQPFDARAFSRSLVG 308

Query: 313 CLD 315
             D
Sbjct: 309 LED 311


>gi|92115105|ref|YP_575033.1| signal recognition particle-docking protein FtsY [Chromohalobacter
           salexigens DSM 3043]
 gi|91798195|gb|ABE60334.1| signal recognition particle-docking protein FtsY [Chromohalobacter
           salexigens DSM 3043]
          Length = 501

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 189/301 (62%), Gaps = 3/301 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           W  ++  G   T     EG+  + +  +++DD + E+LE  L+ +D+G+    +I++ L 
Sbjct: 192 WFARIKAGLGKTRANFTEGLAGLFLGKKQIDDDLMEDLETQLLMADVGIEATTEIIDRLT 251

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129
            +   K++   + LY  + E +  +L P+++P       + P VIL+VGVNGVGKTT IG
Sbjct: 252 ERVSRKELKDPQALYSALQEELQDLLDPVAQPLALPPKGQGPFVILMVGVNGVGKTTTIG 311

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+++    G  VMLAAGDTFR+AA++QLK+W +R     V    G+D+A++ Y+A   A
Sbjct: 312 KLTQRFQREGRSVMLAAGDTFRAAAVEQLKVWGERNHVPVVAQHTGADSASVIYDALSAA 371

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ VDVLI DTAGRLHN S LM  + K+ RV+ +LD  APH V+ VLDA TGQNAL Q 
Sbjct: 372 KARGVDVLIADTAGRLHNKSHLMEELKKVRRVMAKLDEQAPHEVMLVLDAGTGQNALSQA 431

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+ +TK+DGTA+GG +  +      P+ F+GVGE ++DL PF A+DF + 
Sbjct: 432 STFNEAVPVTGITLTKLDGTAKGGIIFALAKQLGTPIRFIGVGETLDDLRPFAAEDFVSA 491

Query: 310 I 310
           +
Sbjct: 492 L 492


>gi|90412727|ref|ZP_01220728.1| putative cell division protein FtsY [Photobacterium profundum 3TCK]
 gi|90326302|gb|EAS42721.1| putative cell division protein FtsY [Photobacterium profundum 3TCK]
          Length = 438

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 128/299 (42%), Positives = 194/299 (64%), Gaps = 1/299 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           +S  +  +L +G   T      G   + S +++DD + EELE+ L+ +D+G+    KI+E
Sbjct: 131 QSDGFFARLMRGLKKTKTNFGSGFFGLFSGKKIDDELFEELEEQLLIADVGMDTTLKIIE 190

Query: 69  ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K   K++     LY +  E +  ML  + +P   D S +P VIL+VGVNGVGKTT 
Sbjct: 191 NLTDKANRKELKDGEALYGLLKEELADMLSTVEQPLIVDTSQKPFVILMVGVNGVGKTTT 250

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A +
Sbjct: 251 IGKLAKQFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNGVPVVAQHTGADSASVIFDAIE 310

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ VDV+I DTAGRL N   LM  + K++RV+K++DP APH ++  +DA TGQNA+ 
Sbjct: 311 SAKARNVDVVIADTAGRLQNKGHLMEELRKIVRVMKKVDPAAPHEIMLTVDAGTGQNAIS 370

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++F  VA  +G+ ++K+DGTA+GG +  I     IP+ ++G+GEGI+DL PFVA +F
Sbjct: 371 QAKLFSEVAPVSGITISKLDGTAKGGVIFAIADQFSIPIRYIGIGEGIDDLRPFVADEF 429


>gi|299769869|ref|YP_003731895.1| signal recognition particle-docking protein FtsY [Acinetobacter sp.
           DR1]
 gi|298699957|gb|ADI90522.1| signal recognition particle-docking protein FtsY [Acinetobacter sp.
           DR1]
          Length = 370

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 135/307 (43%), Positives = 196/307 (63%), Gaps = 2/307 (0%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           V      +  ++ +G   T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   +
Sbjct: 59  VEQPKTGFFGRMKEGLTKTRRNFADGMVNILIGGKEIDDELLEEVEEQLLVADIGVEATK 118

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVG
Sbjct: 119 TIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVG 178

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ +
Sbjct: 179 KTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDISVVAQGHGADSASVIF 238

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +AF+ A+AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQ
Sbjct: 239 DAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQ 298

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ QV+ F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF A
Sbjct: 299 NAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSA 358

Query: 304 KDFSAVI 310
           K F A +
Sbjct: 359 KSFVAAL 365


>gi|24376059|ref|NP_720102.1| cell division protein FtsY [Shewanella oneidensis MR-1]
 gi|24351075|gb|AAN57546.1|AE015890_7 cell division protein FtsY [Shewanella oneidensis MR-1]
          Length = 510

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 128/296 (43%), Positives = 195/296 (65%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ L 
Sbjct: 203 SFFARLKRGLMRTSENIGSGFIGLFRGKKIDDELFEELEEQLLIADVGVETTGRLIKSLT 262

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K +     LYD+  + + K L P++ P   + ++ P VIL+VGVNGVGKTT IGK
Sbjct: 263 EHASRKQLKDAEALYDLLRDEMQKTLDPVAIPLVPENANGPFVILMVGVNGVGKTTTIGK 322

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + A+
Sbjct: 323 LAKQYQRQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQAAK 382

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K+DVLI DTAGRL N S LM  + K++RV+K+LDP APH V+  LDA+TGQNA+ Q +
Sbjct: 383 ARKIDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAQ 442

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F    G TG+ ++K+DGTA+GG +  I    KIP+ ++GVGE I+DL  F +K+F
Sbjct: 443 LFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRTFNSKEF 498


>gi|148550186|ref|YP_001270288.1| signal recognition particle-docking protein FtsY [Pseudomonas
           putida F1]
 gi|148514244|gb|ABQ81104.1| signal recognition particle-docking protein FtsY [Pseudomonas
           putida F1]
          Length = 497

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 129/296 (43%), Positives = 190/296 (64%), Gaps = 2/296 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   ++ +DD + +E+E  L+ +D+GV     IV+ L 
Sbjct: 193 FFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSAIVQNLT 252

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   K ++    LY  + E +  +L P+ +P      ++P+VILVVGVNG GKTT IGK
Sbjct: 253 QKVARKQLADADALYKSLQEELAALLRPVEQPLKVQAQNKPYVILVVGVNGAGKTTTIGK 312

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A+
Sbjct: 313 LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQAAK 372

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q +
Sbjct: 373 ARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDVEAPHEVLLVLDAGTGQNAISQAK 432

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F+     TGL +TK+DGTA+GG +  +     IP+ F+GVGEGI+DL  F A+ F
Sbjct: 433 YFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPF 488


>gi|293607882|ref|ZP_06690185.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828455|gb|EFF86817.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122473|gb|ADY81996.1| cell division protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 370

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 135/307 (43%), Positives = 196/307 (63%), Gaps = 2/307 (0%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           V      +  ++ +G   T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   +
Sbjct: 59  VEQPKTGFFGRMKEGLTKTRRNFADGMVNILIGGKEIDDELLEEVEEQLLVADIGVEATK 118

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVG
Sbjct: 119 TIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVG 178

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ +
Sbjct: 179 KTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDISVVAQGHGADSASVIF 238

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +AF+ A+AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQ
Sbjct: 239 DAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQ 298

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ QV+ F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF A
Sbjct: 299 NAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSA 358

Query: 304 KDFSAVI 310
           K F A +
Sbjct: 359 KSFVAAL 365


>gi|21672318|ref|NP_660385.1| cell division protein FtsY [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25090363|sp|Q8KA77|FTSY_BUCAP RecName: Full=Cell division protein ftsY homolog
 gi|21622918|gb|AAM67596.1| cell division protein FtsY [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 351

 Score =  249 bits (635), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 126/304 (41%), Positives = 192/304 (63%), Gaps = 2/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q + ++ + ++ KL      T     + I+ I  S+++DD   EELED ++ SDIGV   
Sbjct: 42  QNIDNKKIDFLFKLKNSLNKTKQFFGDSISRIFLSKKIDDAFFEELEDTMLLSDIGVHTT 101

Query: 64  QKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +I+ +L+     K++ + ++V + + E ++ +L  + KP     +H P VILVVG+NG 
Sbjct: 102 DQIISKLINDATHKELKNPEKVYFLLKEHMYSILNRVEKPLKIS-NHTPFVILVVGINGT 160

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT + KL+KK   AG  VMLAA DTFR+A I+QL+I   R +   +    GSD A++A
Sbjct: 161 GKTTTVSKLAKKYKLAGKSVMLAAADTFRAAGIEQLQILGKRNNIPVISQSSGSDPASVA 220

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K A +KK+DVLIIDTAGRLHN   L+  + KM+RV+K+L+  APH ++ ++DA  G
Sbjct: 221 FDAVKSAISKKIDVLIIDTAGRLHNKLHLLEELKKMVRVIKKLNLSAPHEIMLIIDACNG 280

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN ++Q EMFH     TGL++TK+DGTA+GG +  +     IP+ ++G+GE   DL  F 
Sbjct: 281 QNTIKQTEMFHKAINLTGLVITKLDGTAKGGVIFSLANQFLIPIRYIGIGEKTTDLVVFN 340

Query: 303 AKDF 306
           + DF
Sbjct: 341 SNDF 344


>gi|260771642|ref|ZP_05880562.1| signal recognition particle receptor protein FtsY [Vibrio
           metschnikovii CIP 69.14]
 gi|260613419|gb|EEX38618.1| signal recognition particle receptor protein FtsY [Vibrio
           metschnikovii CIP 69.14]
          Length = 388

 Score =  249 bits (635), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 196/304 (64%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    S S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 76  QEQEKPSESFFVRLKRSLSRTKANIGAGFFGLFQGKKIDDQLFEELEEQLLMADVGMETT 135

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K   + +     LY +  + + +ML  + KP   D    P+VIL+VGVNGV
Sbjct: 136 VKIITSLTEKASRQQLRDGEALYALLKQEMAEMLAKVEKPLQIDSQTMPYVILMVGVNGV 195

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ 
Sbjct: 196 GKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNHVPVIAQHTGADSASVI 255

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ +DV+I DTAGRL N + LM  + K++RV+K++DP APH ++  LDA TG
Sbjct: 256 YDAIEAAKARGIDVVIADTAGRLQNKANLMEELKKIVRVMKKIDPQAPHEIMLTLDAGTG 315

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F   A  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PFV
Sbjct: 316 QNAISQAKLFSQAAPLTGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEGIDDLRPFV 375

Query: 303 AKDF 306
            ++F
Sbjct: 376 TQEF 379


>gi|303253508|ref|ZP_07339647.1| cell division protein FtsY-like protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248379|ref|ZP_07530402.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307257413|ref|ZP_07539182.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307261833|ref|ZP_07543497.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|302647618|gb|EFL77835.1| cell division protein FtsY-like protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855117|gb|EFM87297.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306864065|gb|EFM95979.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306868450|gb|EFN00263.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 576

 Score =  249 bits (635), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 191/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+    K++  L  
Sbjct: 273 FFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTTTKVINNLTQ 332

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +    +LY   +L + ++L P+S+P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 333 HASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGVGKTTTIGKL 392

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ ++A + A +
Sbjct: 393 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAS 452

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D+LI DTAGRL N + LM  + K++RV K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 453 KGIDILIADTAGRLQNKNNLMDELKKIVRVTKKYDESAPHEIMLTLDAGTGQNAISQAKL 512

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF A++F
Sbjct: 513 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 567


>gi|165976771|ref|YP_001652364.1| cell division protein [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|165876872|gb|ABY69920.1| cell division protein [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 573

 Score =  248 bits (634), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 191/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+    K++  L  
Sbjct: 270 FFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTTTKVINNLTQ 329

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +    +LY   +L + ++L P+S+P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 330 HASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGVGKTTTIGKL 389

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ ++A + A +
Sbjct: 390 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAS 449

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D+LI DTAGRL N + LM  + K++RV K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 450 KGIDILIADTAGRLQNKNNLMDELKKIVRVTKKYDESAPHEIMLTLDAGTGQNAISQAKL 509

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF A++F
Sbjct: 510 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 564


>gi|117922404|ref|YP_871596.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           ANA-3]
 gi|117614736|gb|ABK50190.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           ANA-3]
          Length = 562

 Score =  248 bits (634), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 126/296 (42%), Positives = 196/296 (66%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ L 
Sbjct: 255 SFFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTSRLIKSLT 314

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K +     LY++  + + K L P++ P   + ++ P+VIL+VGVNGVGKTT IGK
Sbjct: 315 EHASRKQLKDAEALYELLRDEMQKTLDPVAIPLVPENANGPYVILMVGVNGVGKTTTIGK 374

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + A+
Sbjct: 375 LAKQYQRQGKTVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQAAK 434

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K+D+LI DTAGRL N S LM  + K++RV+K+LDP APH V+  LDA+TGQNA+ Q +
Sbjct: 435 ARKIDILIADTAGRLQNKSHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAQ 494

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F    G TG+ ++K+DGTA+GG +  I    KIP+ ++GVGE I+DL  F +K+F
Sbjct: 495 LFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRTFNSKEF 550


>gi|37678296|ref|NP_932905.1| signal recognition particle GTPase [Vibrio vulnificus YJ016]
 gi|37197035|dbj|BAC92876.1| signal recognition particle GTPase [Vibrio vulnificus YJ016]
          Length = 437

 Score =  248 bits (634), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 129/304 (42%), Positives = 198/304 (65%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 125 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 184

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+E L  K   +D+     LY +  E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 185 LKIIENLTEKASRRDLKDGEALYGLLKEEMAEILSKVEQPLQVDSSKTPYVILMVGVNGV 244

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+  + G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 245 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 304

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 305 YDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 364

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 365 QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFE 424

Query: 303 AKDF 306
            ++F
Sbjct: 425 TQEF 428


>gi|53728959|ref|ZP_00134416.2| COG0552: Signal recognition particle GTPase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208810|ref|YP_001054035.1| cell division protein FtsY-like protein [Actinobacillus
           pleuropneumoniae L20]
 gi|126097602|gb|ABN74430.1| cell division protein FtsY-like protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 577

 Score =  248 bits (634), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 191/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+    K++  L  
Sbjct: 274 FFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTTTKVINNLTQ 333

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +    +LY   +L + ++L P+S+P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 334 HASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGVGKTTTIGKL 393

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ ++A + A +
Sbjct: 394 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAS 453

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D+LI DTAGRL N + LM  + K++RV K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 454 KGIDILIADTAGRLQNKNNLMDELKKIVRVTKKYDESAPHEIMLTLDAGTGQNAISQAKL 513

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF A++F
Sbjct: 514 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 568


>gi|50123266|ref|YP_052433.1| cell division protein FtsY [Pectobacterium atrosepticum SCRI1043]
 gi|49613792|emb|CAG77243.1| cell division protein [Pectobacterium atrosepticum SCRI1043]
          Length = 469

 Score =  248 bits (634), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 124/297 (41%), Positives = 191/297 (64%), Gaps = 6/297 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   +KI++ L  
Sbjct: 167 FFARLKRSLVKTRENLGSGFIGLFRGKKIDDDLFDELEEQLLIADVGVETTRKIIDSLTE 226

Query: 72  --TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             ++R  KD     +   + E + ++L  +  P N +    P+VIL+VGVNGVGKTT IG
Sbjct: 227 HASRRQLKDADT--LFVKLKEEMAEILAKVDVPLNIE-GKTPYVILMVGVNGVGKTTTIG 283

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A
Sbjct: 284 KMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVIAQHTGADSASVIFDAIQAA 343

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q 
Sbjct: 344 KARGVDVLIADTAGRLQNKAYLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAVSQA 403

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 404 KLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLRPFKADDF 460


>gi|330891336|gb|EGH23997.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 354

 Score =  248 bits (634), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 194/305 (63%), Gaps = 2/305 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV  
Sbjct: 39  QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLPADVGVEA 98

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 99  TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 158

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 159 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 218

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 219 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 278

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P++++GVGEGI+DL  F
Sbjct: 279 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIHYIGVGEGIDDLRTF 338

Query: 302 VAKDF 306
            A+ F
Sbjct: 339 EAEPF 343


>gi|307246266|ref|ZP_07528347.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307250606|ref|ZP_07532547.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307255250|ref|ZP_07537065.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259685|ref|ZP_07541408.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852875|gb|EFM85099.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306857347|gb|EFM89462.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861799|gb|EFM93778.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866225|gb|EFM98090.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 577

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 191/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+    K++  L  
Sbjct: 274 FFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTTTKVINNLTQ 333

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +    +LY   +L + ++L P+S+P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 334 HASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGVGKTTTIGKL 393

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ ++A + A +
Sbjct: 394 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAS 453

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D+LI DTAGRL N + LM  + K++RV K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 454 KGIDILIADTAGRLQNKNNLMDELKKIVRVTKKYDESAPHEIMLTLDAGTGQNAISQAKL 513

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF A++F
Sbjct: 514 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 568


>gi|289672445|ref|ZP_06493335.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. syringae FF5]
          Length = 339

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 128/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV     I++ 
Sbjct: 31  VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 90

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K ++  + LY  +   +  ML P+ +P      HRP VILVVGVNG GKTT I
Sbjct: 91  LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHRPFVILVVGVNGAGKTTTI 150

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + 
Sbjct: 151 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 210

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q
Sbjct: 211 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 270

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F
Sbjct: 271 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 328


>gi|262279319|ref|ZP_06057104.1| signal recognition particle-docking protein FtsY [Acinetobacter
           calcoaceticus RUH2202]
 gi|262259670|gb|EEY78403.1| signal recognition particle-docking protein FtsY [Acinetobacter
           calcoaceticus RUH2202]
          Length = 370

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 136/311 (43%), Positives = 197/311 (63%), Gaps = 2/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
           S   V      +  ++ +G   T     +G+ +I I  + +DD + EE+E+ L+ +DIGV
Sbjct: 55  SETAVEQPKSGFFGRMKEGLTKTRRNFADGMVNILIGGKEIDDELLEEVEEQLLVADIGV 114

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGV
Sbjct: 115 EATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGV 174

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A
Sbjct: 175 NGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSA 234

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++AF+ A+AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA
Sbjct: 235 SVIFDAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDA 294

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ QV+ F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL 
Sbjct: 295 GTGQNAINQVQEFDQTVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLR 354

Query: 300 PFVAKDFSAVI 310
           PF AK F A +
Sbjct: 355 PFSAKSFVAAL 365


>gi|227358349|ref|ZP_03842690.1| cell division protein FtsY [Proteus mirabilis ATCC 29906]
 gi|227161685|gb|EEI46722.1| cell division protein FtsY [Proteus mirabilis ATCC 29906]
          Length = 401

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 133/295 (45%), Positives = 188/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   L  G   +   +++DD + EELE+ L+ +D+G+    KI+  L  
Sbjct: 99  FFSRLKKGLLKTRQNLGSGFMGLFRGKKIDDELFEELEEQLLIADVGMDTTSKIINSLTQ 158

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               KD+     LY  + E +  +L  + KP N +   +P VIL+VGVNGVGKTT IGKL
Sbjct: 159 HASRKDLKDAESLYGKLREEMGDILNKVDKPLNIE-GKKPFVILMVGVNGVGKTTTIGKL 217

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     +    G+D A++ ++A + AQA
Sbjct: 218 ARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADPASVIFDAIQSAQA 277

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 278 KGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTLDASTGQNAVSQAKL 337

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TGL +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 338 FNETVGLTGLTLTKLDGTAKGGVIFSIADQFGIPIRYIGVGEGIEDLRPFKADDF 392


>gi|332871215|ref|ZP_08439792.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii 6013113]
 gi|332731700|gb|EGJ62983.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii 6013113]
          Length = 369

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 134/300 (44%), Positives = 196/300 (65%), Gaps = 2/300 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  ++ +G + T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I+  L 
Sbjct: 65  FFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLT 124

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVGKTT IGK
Sbjct: 125 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGK 184

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++AF+ A+
Sbjct: 185 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFESAR 244

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQNA+ QV+
Sbjct: 245 AKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQ 304

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF AK F A +
Sbjct: 305 EFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 364


>gi|227113848|ref|ZP_03827504.1| cell division protein FtsY [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 503

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 125/297 (42%), Positives = 190/297 (63%), Gaps = 6/297 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   +KI+  L  
Sbjct: 201 FFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLVADVGVETTRKIITSLTE 260

Query: 72  --TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             ++R  KD     +   + E + ++L  +  P N +    P+VIL+VGVNGVGKTT IG
Sbjct: 261 HASRRQLKDADT--LFVKLKEEMAEILAKVDAPLNIE-GKTPYVILMVGVNGVGKTTTIG 317

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + A
Sbjct: 318 KMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSASVIFDAIQAA 377

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q 
Sbjct: 378 KARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAVSQA 437

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 438 KLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLRPFKADDF 494


>gi|169795732|ref|YP_001713525.1| cell division protein [Acinetobacter baumannii AYE]
 gi|213157575|ref|YP_002319620.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii AB0057]
 gi|215483218|ref|YP_002325425.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii AB307-0294]
 gi|301345809|ref|ZP_07226550.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii AB056]
 gi|301513516|ref|ZP_07238753.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii AB058]
 gi|301594918|ref|ZP_07239926.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii AB059]
 gi|332850276|ref|ZP_08432624.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii 6013150]
 gi|169148659|emb|CAM86525.1| cell division protein [Acinetobacter baumannii AYE]
 gi|213056735|gb|ACJ41637.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii AB0057]
 gi|213986284|gb|ACJ56583.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii AB307-0294]
 gi|332730851|gb|EGJ62160.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii 6013150]
          Length = 368

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 134/300 (44%), Positives = 196/300 (65%), Gaps = 2/300 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  ++ +G + T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I+  L 
Sbjct: 64  FFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLT 123

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVGKTT IGK
Sbjct: 124 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGK 183

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++AF+ A+
Sbjct: 184 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFESAR 243

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQNA+ QV+
Sbjct: 244 AKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQ 303

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF AK F A +
Sbjct: 304 EFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 363


>gi|197287408|ref|YP_002153280.1| cell division protein [Proteus mirabilis HI4320]
 gi|194684895|emb|CAR47054.1| cell division protein [Proteus mirabilis HI4320]
          Length = 612

 Score =  248 bits (633), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 133/295 (45%), Positives = 188/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   L  G   +   +++DD + EELE+ L+ +D+G+    KI+  L  
Sbjct: 310 FFSRLKKGLLKTRQNLGSGFMGLFRGKKIDDELFEELEEQLLIADVGMDTTSKIINSLTQ 369

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               KD+     LY  + E +  +L  + KP N +   +P VIL+VGVNGVGKTT IGKL
Sbjct: 370 HASRKDLKDAESLYGKLREEMGDILNKVDKPLNIE-GKKPFVILMVGVNGVGKTTTIGKL 428

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     +    G+D A++ ++A + AQA
Sbjct: 429 ARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADPASVIFDAIQSAQA 488

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 489 KGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTLDASTGQNAVSQAKL 548

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TGL +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 549 FNETVGLTGLTLTKLDGTAKGGVIFSIADQFGIPIRYIGVGEGIEDLRPFKADDF 603


>gi|184158365|ref|YP_001846704.1| Signal recognition particle GTPase [Acinetobacter baumannii ACICU]
 gi|239503951|ref|ZP_04663261.1| Signal recognition particle GTPase [Acinetobacter baumannii AB900]
 gi|260554794|ref|ZP_05827015.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii ATCC 19606]
 gi|332872440|ref|ZP_08440413.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii 6014059]
 gi|183209959|gb|ACC57357.1| Signal recognition particle GTPase [Acinetobacter baumannii ACICU]
 gi|193077529|gb|ABO12357.2| cell division protein [Acinetobacter baumannii ATCC 17978]
 gi|260411336|gb|EEX04633.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii ATCC 19606]
 gi|322508691|gb|ADX04145.1| Cell division protein [Acinetobacter baumannii 1656-2]
 gi|323518297|gb|ADX92678.1| Signal recognition particle GTPase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332739363|gb|EGJ70217.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii 6014059]
          Length = 368

 Score =  248 bits (633), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 134/300 (44%), Positives = 196/300 (65%), Gaps = 2/300 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  ++ +G + T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I+  L 
Sbjct: 64  FFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLT 123

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVGKTT IGK
Sbjct: 124 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGK 183

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++AF+ A+
Sbjct: 184 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFESAR 243

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQNA+ QV+
Sbjct: 244 AKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQ 303

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF AK F A +
Sbjct: 304 EFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 363


>gi|153835089|ref|ZP_01987756.1| cell division protein FtsY [Vibrio harveyi HY01]
 gi|148868439|gb|EDL67547.1| cell division protein FtsY [Vibrio harveyi HY01]
          Length = 410

 Score =  248 bits (633), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 198/304 (65%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 98  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMETT 157

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY +  E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 158 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILAKVEQPLEIDSSKTPYVILMVGVNGV 217

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+  + G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 218 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 277

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 278 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 337

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF 
Sbjct: 338 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFE 397

Query: 303 AKDF 306
            ++F
Sbjct: 398 TQEF 401


>gi|307546425|ref|YP_003898904.1| signal recognition particle receptor [Halomonas elongata DSM 2581]
 gi|307218449|emb|CBV43719.1| K03110 signal recognition particle receptor [Halomonas elongata DSM
           2581]
          Length = 455

 Score =  248 bits (633), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 130/310 (41%), Positives = 188/310 (60%), Gaps = 9/310 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61
            +K   E   W  ++  G   T   L +G+  +   R+ +DD + EELE  L+ +D+G+ 
Sbjct: 137 REKPRGEKKGWFARIKDGLGKTRANLTDGLAGLFLGRKQIDDDLMEELETQLLMADVGIE 196

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
              +I++ L  +   K++     L+     +++ L+  +  PL  P        P VILV
Sbjct: 197 ATTEIIDRLTERVSRKELKDPEALFKALQEELASLLDGVTQPLELPPK---GEGPFVILV 253

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QLK+W +R S   V    G+
Sbjct: 254 VGVNGVGKTTTIGKLTQRFQREGRSVMLAAGDTFRAAAVEQLKVWGERNSVPVVAQHTGA 313

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D+A++ Y+A   A+A+ VDVLI DTAGRLHN S LM  + K+ RV+ +LD  APH V+ V
Sbjct: 314 DSASVVYDALAAARARGVDVLIADTAGRLHNKSHLMEELKKVRRVMGKLDADAPHEVMLV 373

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA TGQNAL Q   F+     TG+ +TK+DGTA+GG +  +      P+ F+GVGE ++
Sbjct: 374 LDAGTGQNALSQASTFNEAVPVTGITLTKLDGTAKGGIIFALAQQLGTPIRFIGVGETLD 433

Query: 297 DLEPFVAKDF 306
           DL PF A++F
Sbjct: 434 DLRPFAAREF 443


>gi|308051465|ref|YP_003915031.1| signal recognition particle-docking protein FtsY [Ferrimonas
           balearica DSM 9799]
 gi|307633655|gb|ADN77957.1| signal recognition particle-docking protein FtsY [Ferrimonas
           balearica DSM 9799]
          Length = 590

 Score =  248 bits (633), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 127/296 (42%), Positives = 190/296 (64%), Gaps = 3/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L  G   TS  +  G   +   +++DD + EELE  L+ +D+GV    +I++ L  
Sbjct: 285 FFARLKAGLRRTSENIGGGFMALFKGKKIDDELFEELETQLLLADVGVETTSRIIDSLTD 344

Query: 73  KRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           K    ++     L+    SEL    L  + +P   +  + P VIL+VGVNGVGKTT IGK
Sbjct: 345 KASFGELKDSDALFAHLKSEL-KDTLSKVDQPLVIENPNGPFVILMVGVNGVGKTTTIGK 403

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G  VMLAAGDTFR+AA++QL++W DR +   +    G+D+A++ ++A + A+
Sbjct: 404 LAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDALQAAK 463

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VDVLI DTAGRL N + LM  + K++RV+K+LD +APH V+  LDA+TGQNA+ Q +
Sbjct: 464 ARNVDVLIADTAGRLQNKAHLMDELKKIVRVMKKLDENAPHEVMLTLDASTGQNAISQAQ 523

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F+   G TGL +TK+DGTA+GG +  +     IPV ++GVGEGI+DL PF ++ F
Sbjct: 524 IFNEAVGLTGLTLTKLDGTAKGGVIFALADKFGIPVRYIGVGEGIDDLRPFESQAF 579


>gi|156972628|ref|YP_001443535.1| signal recognition particle GTPase [Vibrio harveyi ATCC BAA-1116]
 gi|156524222|gb|ABU69308.1| hypothetical protein VIBHAR_00280 [Vibrio harveyi ATCC BAA-1116]
          Length = 408

 Score =  248 bits (633), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 198/304 (65%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 96  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMETT 155

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY +  E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 156 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILAKVEQPLEIDSSKTPYVILMVGVNGV 215

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+  + G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 216 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 275

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 276 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 335

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF 
Sbjct: 336 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFE 395

Query: 303 AKDF 306
            ++F
Sbjct: 396 TQEF 399


>gi|227329287|ref|ZP_03833311.1| cell division protein FtsY [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 488

 Score =  248 bits (633), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 125/297 (42%), Positives = 190/297 (63%), Gaps = 6/297 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   +KI+  L  
Sbjct: 186 FFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLVADVGVETTRKIIGSLTE 245

Query: 72  --TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             ++R  KD     +   + E + ++L  +  P N +    P+VIL+VGVNGVGKTT IG
Sbjct: 246 HASRRQLKDADT--LFVKLKEEMAEILAKVDAPLNIE-GKTPYVILMVGVNGVGKTTTIG 302

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + A
Sbjct: 303 KMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSASVIFDAIQAA 362

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q 
Sbjct: 363 KARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAVSQA 422

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 423 KLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLRPFKADDF 479


>gi|167648815|ref|YP_001686478.1| signal recognition particle-docking protein FtsY [Caulobacter sp.
           K31]
 gi|167351245|gb|ABZ73980.1| signal recognition particle-docking protein FtsY [Caulobacter sp.
           K31]
          Length = 314

 Score =  248 bits (633), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 134/304 (44%), Positives = 202/304 (66%), Gaps = 1/304 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W ++LT G A +S ++ E +T + + + LD    ++LE++LI +D+G  +A +I +    
Sbjct: 11  WFQRLTSGLARSSQQMTEQVTGVFTKKPLDQEQLDQLEEMLIEADLGPQIAARIADAFGK 70

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            R+ K  +   V   ++EL+   L      F+     +P+V+L +GVNG GKTT +GK++
Sbjct: 71  ARFGKSSTEIEVKEALAELVAAELSDREGTFDPLSGPKPYVVLFIGVNGSGKTTTLGKIA 130

Query: 133 KKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
             ++ +   KV++AAGDTFR+AA++QLK+WADR  ADF+    G+DAAALAYEA ++A+ 
Sbjct: 131 SDLTHNKKAKVLIAAGDTFRAAAVEQLKVWADRAGADFMSRPPGADAAALAYEAVERAKL 190

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV++IDTAGRL N   LM  + K+IRVLK++DP APH  L VLDAT G+NAL Q ++
Sbjct: 191 EGHDVVLIDTAGRLQNKQGLMDELLKVIRVLKKVDPDAPHETLLVLDATVGRNALAQEKI 250

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G +G++MTK+DGTARGG L+P+      P+  +GVGEG++DL+PF A+ FS  + 
Sbjct: 251 FGNQVGVSGIVMTKLDGTARGGVLVPVARASDSPIKLIGVGEGVDDLQPFDARAFSRSLV 310

Query: 312 GCLD 315
           G  D
Sbjct: 311 GLED 314


>gi|320539370|ref|ZP_08039039.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Serratia symbiotica str.
           Tucson]
 gi|320030495|gb|EFW12505.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Serratia symbiotica str.
           Tucson]
          Length = 440

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 186/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L      T   L  G   +   +R+DD + +ELE+ L+ +D+GV   +KI+  L  
Sbjct: 138 FFTRLKHSLLKTKQNLGSGFISLFRGKRIDDDLFDELEEQLLIADVGVETTRKIITTLTQ 197

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  +   + ++L  + +P N      P+VIL+VGVNGVGKTT IGKL
Sbjct: 198 HASRKQLKDAEALYGKLKAEMSEILTNVDRPLNVS-GKAPYVILMVGVNGVGKTTTIGKL 256

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 257 ARQFQAKGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSASVIFDAVQAAKA 316

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 317 RGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDTQAPHEVMLTLDASTGQNAVSQAKL 376

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 377 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFKADDF 431


>gi|260550345|ref|ZP_05824557.1| signal recognition particle GTPase [Acinetobacter sp. RUH2624]
 gi|260406657|gb|EEX00138.1| signal recognition particle GTPase [Acinetobacter sp. RUH2624]
          Length = 368

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/300 (44%), Positives = 196/300 (65%), Gaps = 2/300 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  ++ +G + T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I+  L 
Sbjct: 64  FFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLT 123

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVGKTT IGK
Sbjct: 124 ERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGK 183

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++AF+ A+
Sbjct: 184 LAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFESAR 243

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQNA+ QV+
Sbjct: 244 AKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQ 303

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF AK F A +
Sbjct: 304 EFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 363


>gi|253686507|ref|YP_003015697.1| signal recognition particle-docking protein FtsY [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753085|gb|ACT11161.1| signal recognition particle-docking protein FtsY [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 495

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/297 (41%), Positives = 190/297 (63%), Gaps = 6/297 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   +KI+  L  
Sbjct: 193 FFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLVADVGVETTRKIITSLTE 252

Query: 72  --TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             ++R  KD     +   + + + ++L  +  P N +    P+VIL+VGVNGVGKTT IG
Sbjct: 253 HASRRQLKDADT--LFVKLKDEMAEILAKVDAPLNIE-GKTPYVILMVGVNGVGKTTTIG 309

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + A
Sbjct: 310 KMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSASVIFDAIQAA 369

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q 
Sbjct: 370 KARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAVSQA 429

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 430 KLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLRPFKADDF 486


>gi|15603384|ref|NP_246458.1| hypothetical protein PM1519 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721906|gb|AAK03603.1| FtsY [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 459

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/295 (43%), Positives = 191/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   L  G       +++DD + EELE+ L+ +D+GV  A KI+  L  
Sbjct: 150 FFSRLVKGLLKTKQNLGAGFRSFFFGKKIDDALFEELEEQLLIADLGVPTATKIINNLTQ 209

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               + +    +LY   ++ + ++L P+++P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 210 HASHQQLKEADLLYQQLKVEMAEILKPVAQPLVIDQSKKPYVILMVGVNGVGKTTTIGKL 269

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++  + G  VMLAAGDTFR+AA++QL++W +R S   V    GSD+A++ ++A + A A
Sbjct: 270 ARQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVVAQSTGSDSASVIFDAMQSAAA 329

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 330 RHVDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 389

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL PF A +F
Sbjct: 390 FHEAVGLTGITLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLRPFNADEF 444


>gi|120556651|ref|YP_961002.1| signal recognition particle-docking protein FtsY [Marinobacter
           aquaeolei VT8]
 gi|120326500|gb|ABM20815.1| signal recognition particle-docking protein FtsY [Marinobacter
           aquaeolei VT8]
          Length = 405

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 195/301 (64%), Gaps = 8/301 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVE- 68
           +S   ++ +G   T   L  G+ D+ S  +++D+ + EE+E  L+ +D+GV    +I++ 
Sbjct: 101 VSVFERIKQGLGKTRASLTGGLADLFSVGKKIDEDLLEEIETTLLMADVGVTATSEIIDA 160

Query: 69  --ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
             E L +   KD  ++++ L D    +H +L  +++P   D   +P+VIL+VGVNGVGKT
Sbjct: 161 LTEKLERNQLKDGEALRKALRDE---LHGLLKEVARPLEIDAGKQPYVILMVGVNGVGKT 217

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+KK    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ ++A
Sbjct: 218 TTIGKLTKKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIFDA 277

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + AQ++ VDV+I DTAGRL N   LM  + K++RV+K+LD  APH V+ VLDA TGQNA
Sbjct: 278 IQSAQSRGVDVVIADTAGRLQNKDNLMNELSKVVRVMKKLDESAPHEVMLVLDAGTGQNA 337

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q ++F    G +G+ +TK+DGTA+GG +  I    ++P+ ++GVGE   DL  F A+ 
Sbjct: 338 LSQAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRYIGVGEQAEDLRSFDAET 397

Query: 306 F 306
           F
Sbjct: 398 F 398


>gi|262273591|ref|ZP_06051405.1| signal recognition particle receptor protein FtsY [Grimontia
           hollisae CIP 101886]
 gi|262222569|gb|EEY73880.1| signal recognition particle receptor protein FtsY [Grimontia
           hollisae CIP 101886]
          Length = 529

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 194/295 (65%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +G   T + L  G   + S +++DD + EELE+ L+ +D+G+    KI+  L  
Sbjct: 226 FFARLKRGLQKTKVNLGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTTTKIINSLTE 285

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K   K++     LY +  + +  +L  + KP   D    P VIL+VGVNGVGKTT IGKL
Sbjct: 286 KASRKELKDGEALYGILKQEMADILSKVEKPLEIDRKDGPFVILMVGVNGVGKTTTIGKL 345

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G  VMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ Y+A + A+A
Sbjct: 346 AKQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKA 405

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDV+I DTAGRL N + LM  + K++RV+K+LD +APH ++  +DA TGQNA+ Q  +
Sbjct: 406 RNVDVVIADTAGRLQNKANLMEELKKIVRVMKKLDENAPHEIMLTIDAGTGQNAISQARL 465

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+ +A  +G+ +TK+DGTA+GG +  +     IP+ ++GVGEGI+DL PFVA++F
Sbjct: 466 FNDIAPLSGITLTKLDGTAKGGVIFAVADQFNIPIRYIGVGEGIDDLRPFVAEEF 520


>gi|153002662|ref|YP_001368343.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS185]
 gi|151367280|gb|ABS10280.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS185]
          Length = 611

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ L  +  
Sbjct: 308 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 367

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LYD+  E + K L P++ P   D ++ P VIL+VGVNGVGKTT IGKL+K+
Sbjct: 368 RKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTIGKLAKQ 427

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + A+A+KV
Sbjct: 428 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQAAKARKV 487

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N + LM  + K++RV+K+LDP  PH V+  LDA+TGQNA+ Q ++F  
Sbjct: 488 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPDTPHEVMLTLDASTGQNAISQAQLFQE 547

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TG+ ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F
Sbjct: 548 AVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 599


>gi|304415087|ref|ZP_07395823.1| fused Signal Recognition Particle (SRP) receptor and membrane
           binding protein/conserved protein [Candidatus Regiella
           insecticola LSR1]
 gi|304283060|gb|EFL91487.1| fused Signal Recognition Particle (SRP) receptor and membrane
           binding protein/conserved protein [Candidatus Regiella
           insecticola LSR1]
          Length = 426

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 124/306 (40%), Positives = 193/306 (63%), Gaps = 2/306 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           SN +      ++  +L K    T   +  G+ ++   +++DD   E+LE+ L+ +DIGV 
Sbjct: 113 SNVQKQPNKENFFTRLKKSLLKTKQNIGFGLLNLFRGKKIDDDFFEQLEEKLLIADIGVE 172

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              KI++ L      K +    VLY+ + E + ++L  + KP   +    P VIL+VGVN
Sbjct: 173 TTHKIIKSLTEHANRKQLKDAEVLYEKLKETMAEILAKVDKPLETN-GKNPCVILMVGVN 231

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +    G  VMLAAGDTFR+AA++QL++W +R +   +    G+D+A+
Sbjct: 232 GVGKTTTIGKLAYQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSAS 291

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++AF+ A+A+ +DVL+ DTAGRL N + LM  + K++RV+K++D  APH ++  LDA+
Sbjct: 292 VIFDAFQAAKARNIDVLLADTAGRLQNKTDLMIELQKIVRVMKKIDEKAPHEIMLTLDAS 351

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++FH   G TG+ +TK+DG+A+GG +  I     IP+ ++GVGE I DL  
Sbjct: 352 TGQNAVNQAKLFHEAVGLTGINLTKLDGSAKGGVIFAIADQFGIPIRYIGVGEAIEDLRL 411

Query: 301 FVAKDF 306
           F A DF
Sbjct: 412 FKADDF 417


>gi|163803406|ref|ZP_02197281.1| cell division protein FtsY [Vibrio sp. AND4]
 gi|159172810|gb|EDP57655.1| cell division protein FtsY [Vibrio sp. AND4]
          Length = 410

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 199/304 (65%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 98  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMETT 157

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY +  E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 158 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILAKVEQPLEIDSSKTPYVILMVGVNGV 217

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+  + G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 218 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 277

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 278 FDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 337

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PF 
Sbjct: 338 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIDDLRPFE 397

Query: 303 AKDF 306
            ++F
Sbjct: 398 TQEF 401


>gi|126641975|ref|YP_001084959.1| cell division protein [Acinetobacter baumannii ATCC 17978]
          Length = 301

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 134/296 (45%), Positives = 194/296 (65%), Gaps = 2/296 (0%)

Query: 17  LTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           + +G + T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I+  L  +  
Sbjct: 1   MKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTA 60

Query: 76  AKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVGKTT IGKL+K+
Sbjct: 61  RGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGKLAKR 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           +   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++AF+ A+AK +
Sbjct: 121 LQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFESARAKGI 180

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQNA+ QV+ F  
Sbjct: 181 DVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQ 240

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
             G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF AK F A +
Sbjct: 241 AVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAAL 296


>gi|304412286|ref|ZP_07393894.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS183]
 gi|307306070|ref|ZP_07585815.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica BA175]
 gi|304349321|gb|EFM13731.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS183]
 gi|306910943|gb|EFN41370.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica BA175]
          Length = 576

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ L  +  
Sbjct: 273 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 332

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LYD+  E + K L P++ P   D ++ P VIL+VGVNGVGKTT IGKL+K+
Sbjct: 333 RKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTIGKLAKQ 392

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + A+A+KV
Sbjct: 393 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQAAKARKV 452

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N + LM  + K++RV+K+LDP  PH V+  LDA+TGQNA+ Q ++F  
Sbjct: 453 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPETPHEVMLTLDASTGQNAISQAQLFQE 512

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TG+ ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F
Sbjct: 513 AVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 564


>gi|330898961|gb|EGH30380.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 494

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV     I++ 
Sbjct: 186 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 245

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K ++  + LY  +   +  ML P+ +P      HRP VILVVGVNG GKTT I
Sbjct: 246 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHRPFVILVVGVNGAGKTTTI 305

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + 
Sbjct: 306 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 365

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q
Sbjct: 366 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 425

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F
Sbjct: 426 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 483


>gi|126172425|ref|YP_001048574.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS155]
 gi|125995630|gb|ABN59705.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS155]
          Length = 621

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ L  +  
Sbjct: 318 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 377

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LYD+  E + K L P++ P   D ++ P VIL+VGVNGVGKTT IGKL+K+
Sbjct: 378 RKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTIGKLAKQ 437

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + A+A+KV
Sbjct: 438 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQAAKARKV 497

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N + LM  + K++RV+K+LDP  PH V+  LDA+TGQNA+ Q ++F  
Sbjct: 498 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPDTPHEVMLTLDASTGQNAISQAQLFQE 557

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TG+ ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F
Sbjct: 558 AVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 609


>gi|268590802|ref|ZP_06125023.1| cell division protein [Providencia rettgeri DSM 1131]
 gi|291313582|gb|EFE54035.1| cell division protein [Providencia rettgeri DSM 1131]
          Length = 627

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 131/295 (44%), Positives = 191/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI++ L  
Sbjct: 325 FFARLKKGLLKTRQNLGSGFFGLFSGKKIDDDLFEELEEQLLIADVGVDTTRKIIDNLTA 384

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++     LY  + E +  +L  + KP   +   +P+VIL+VGVNGVGKTT IGKL
Sbjct: 385 HASRKELKDAEALYGKLREEMSDILAKVDKPLVIE-DKKPYVILMVGVNGVGKTTTIGKL 443

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D A++ ++A + AQA
Sbjct: 444 ARQYQSEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVVAQHTGADPASVIFDAIQSAQA 503

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VDVLI DTAGRL N S LM  + K++RV+K+LD +APH ++  LDA+TGQNA+ Q ++
Sbjct: 504 KGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEIMLTLDASTGQNAVSQAKL 563

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F    G TG+ +TK+DGTA+GG +  I     IP+ ++G+GEGI DL PF A DF
Sbjct: 564 FDDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRPFKADDF 618


>gi|330957085|gb|EGH57345.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 506

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 193/305 (63%), Gaps = 2/305 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV  
Sbjct: 191 QEPENAKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 250

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 251 TSVIIQSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 310

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 311 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 370

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 371 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 430

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 431 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 490

Query: 302 VAKDF 306
            A+ F
Sbjct: 491 EAEPF 495


>gi|160872800|ref|ZP_02062932.1| signal recognition particle-docking protein FtsY [Rickettsiella
           grylli]
 gi|159121599|gb|EDP46937.1| signal recognition particle-docking protein FtsY [Rickettsiella
           grylli]
          Length = 329

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/310 (40%), Positives = 198/310 (63%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLS----WIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSD 57
           N +  +ESL     ++ ++      T  +  E +  ++   +++D  + +E+ DLL+ +D
Sbjct: 2   NVREGNESLERKDHFLYRIKNSLLKTRHQFTENLAHLLFGKKKIDAELIDEIVDLLLMAD 61

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILV 116
           +G  V + I++ L  K     ++  +V++DV  + + ++L P   P   D +H+P VILV
Sbjct: 62  VGSTVTEAIIQRLTVKLERNHLTDGQVIWDVLKQQLGELLQPCEAPLMIDSTHKPMVILV 121

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+  +   G KVMLAAGDTFR+AA +QL IWA+R     +    G+
Sbjct: 122 VGVNGVGKTTSIGKLAYYLKKQGKKVMLAAGDTFRAAATEQLTIWAERNQIPIIAQHQGA 181

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D+A++ Y+AF+ A+A+ +DVLI DTAGR H  + LM  + K+ +V+ +LD  APH ++ +
Sbjct: 182 DSASVIYDAFQAAKARNIDVLIADTAGRFHTKNNLMQELQKIKKVMGKLDVSAPHEIMLI 241

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA TGQNAL Q ++FH   G TGL++TK+DGTA+GG +  I     +P+ F+G+GE ++
Sbjct: 242 LDANTGQNALMQAQVFHEALGLTGLMLTKLDGTAKGGVIFAIAEKLGLPIRFVGLGEAMS 301

Query: 297 DLEPFVAKDF 306
           D+  F AK+F
Sbjct: 302 DIHVFSAKEF 311


>gi|254784500|ref|YP_003071928.1| signal recognition particle-docking protein FtsY [Teredinibacter
           turnerae T7901]
 gi|242667494|gb|ACS93531.1| signal recognition particle-docking protein FtsY [Teredinibacter
           turnerae T7901]
          Length = 334

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/301 (44%), Positives = 202/301 (67%), Gaps = 2/301 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66
           +E +S+  ++ +G + TS +L  G+  ++  ++ +DD + EE+E LL+ +D+GV     I
Sbjct: 26  TEKVSFFTRIKQGLSRTSNQLSGGLASLLLGKKAIDDELLEEIETLLLMADVGVEATTDI 85

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +++L  +   K ++    LY  + + +  +L+ +  P + + + +P VILVVGVNGVGKT
Sbjct: 86  IDDLTARVARKQLADSDALYAALRQSLADLLLDVEAPLDVECAQKPFVILVVGVNGVGKT 145

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K+  + G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ Y+A
Sbjct: 146 TTIGKLAKRFQNQGKSVMLAAGDTFRAAAVEQLQVWGERNKVPVVAQHTGADSASVIYDA 205

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + AQA+++DV+I DTAGRLHN S LM  + K+ RV+ +LD  APH VL VLDA TGQNA
Sbjct: 206 VQSAQARQIDVVIADTAGRLHNKSNLMEELAKVKRVMAKLDDSAPHEVLLVLDAGTGQNA 265

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q   F   AG TGL +TK+DGTA+GG +  +   + +PV ++GVGEGI+DL+PF A  
Sbjct: 266 LSQAGHFKEAAGVTGLALTKLDGTAKGGIIFALSKQYGLPVRYIGVGEGIDDLQPFQATS 325

Query: 306 F 306
           F
Sbjct: 326 F 326


>gi|229587138|ref|YP_002845639.1| Signal recognition particle-docking protein FtsY [Rickettsia
           africae ESF-5]
 gi|228022188|gb|ACP53896.1| Signal recognition particle-docking protein FtsY [Rickettsia
           africae ESF-5]
          Length = 303

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 130/303 (42%), Positives = 192/303 (63%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD G  E LE+LLI SD+ V V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAGTLEALEELLISSDMSVLVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L   + PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAKLIEQQLSKSAIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AA++QL  WADR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
            + +++L IDTAGRLHN   LM  + K+++V+K+LD +AP HS+L V+DA TGQN   QV
Sbjct: 181 KQNINILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSIL-VIDAITGQNTYNQV 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  
Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARN 299

Query: 310 ITG 312
           + G
Sbjct: 300 LVG 302


>gi|304311581|ref|YP_003811179.1| Cell division protein, SRP docking protein [gamma proteobacterium
           HdN1]
 gi|301797314|emb|CBL45534.1| Cell division protein, SRP docking protein [gamma proteobacterium
           HdN1]
          Length = 416

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/305 (43%), Positives = 190/305 (62%), Gaps = 16/305 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S+  ++ +G + T     E +  +++ ++ +D  + EE+E  L+ +D+GV+  Q+IV  L
Sbjct: 110 SFFSRVKRGLSRTRSGFTEAMASLLAGKKAIDADLLEEIETQLLMADVGVSATQRIVTAL 169

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSH----RPHVILVVGVNG 121
             K     VS +R L D   L H +   L+   +     W        +P VIL+VGVNG
Sbjct: 170 TQK-----VS-RRELVDSDALYHALQQELAALLSGHAEPWQLGKTAEGKPRVILMVGVNG 223

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+K++   G +VMLAAGDTFR+AA++QL++W  R     V    G+D+A++
Sbjct: 224 VGKTTTIGKLAKRLQIEGKQVMLAAGDTFRAAAVEQLQVWGQRNEIAVVAQHTGADSASV 283

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A AKKVDVLI DTAGRLH  S LM  + K+ RV+++LDP APH VL VLDA T
Sbjct: 284 IFDALQSATAKKVDVLIADTAGRLHTKSNLMEELKKVKRVMQKLDPQAPHEVLLVLDAGT 343

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q   F+   G TG+++TK+DGTA+GG +  I     IP+  +GVGE I+DL PF
Sbjct: 344 GQNALSQATQFNEAVGVTGIVLTKLDGTAKGGIVFAIAEKTGIPIRLIGVGETIDDLRPF 403

Query: 302 VAKDF 306
             + F
Sbjct: 404 EPQQF 408


>gi|217975238|ref|YP_002359989.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS223]
 gi|217500373|gb|ACK48566.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS223]
          Length = 615

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 126/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ L  +  
Sbjct: 312 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 371

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LYD+  E + K L P++ P   D ++ P VIL+VGVNGVGKTT IGKL+K+
Sbjct: 372 RKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTIGKLAKQ 431

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + A+A+KV
Sbjct: 432 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQAAKARKV 491

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N + LM  + K++RV+K+LDP  PH V+  LDA+TGQNA+ Q ++F  
Sbjct: 492 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPDTPHEVMLTLDASTGQNAISQAQLFQE 551

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TG+ ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F
Sbjct: 552 AVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 603


>gi|254508809|ref|ZP_05120920.1| cell division protein FtsY [Vibrio parahaemolyticus 16]
 gi|219548266|gb|EED25280.1| cell division protein FtsY [Vibrio parahaemolyticus 16]
          Length = 412

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/296 (43%), Positives = 196/296 (66%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  A T   +  G   +   +++DD + EELE+ L+ +D+G+    KI++ L 
Sbjct: 108 SFFARLKRSLARTKANIGAGFFGLFKGKQIDDDLFEELEEQLLIADVGMDTTTKIIDSLT 167

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   +++     LY +  E + ++L  + KP   D S  P+VIL+VGVNGVGKTT IGK
Sbjct: 168 EKASRQELKDGEALYGLLKEEMAEILSTVEKPLEVDTSKTPYVILMVGVNGVGKTTTIGK 227

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ Y+A + A+
Sbjct: 228 LAKQFQAEGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIYDAIESAK 287

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK VDV+I DTAGRL N S LM  + K++RV++++D  APH ++  LDA TGQNA+ Q +
Sbjct: 288 AKGVDVVIADTAGRLQNKSNLMEELRKIVRVMQKVDGSAPHEIMLTLDAGTGQNAISQAK 347

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PF  ++F
Sbjct: 348 LFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFETQEF 403


>gi|94499827|ref|ZP_01306363.1| signal recognition particle-docking protein FtsY [Oceanobacter sp.
           RED65]
 gi|94428028|gb|EAT13002.1| signal recognition particle-docking protein FtsY [Oceanobacter sp.
           RED65]
          Length = 359

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 190/296 (64%), Gaps = 2/296 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  ++  G + T   L EG+ D++   + +D+ + E++E  L+ +DIG+   Q I+++L 
Sbjct: 55  FFARIKAGLSRTRSGLSEGLGDLLLGKKEIDEDLLEDIETQLLMADIGINATQAIIDDLT 114

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   K++     L + + + +  +L P   P     S +P VIL+VGVNGVGKTT IGK
Sbjct: 115 ERSSRKELKDSEALLEALKQHLKDILEPCHAPLEIPQSDKPFVILMVGVNGVGKTTTIGK 174

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++K+    G  VMLAAGDTFR+AA++QL+ W +R     V    G+D+A++ Y+A + AQ
Sbjct: 175 MAKRFQSQGKSVMLAAGDTFRAAAVEQLQTWGERNKVPVVAQHTGADSASVIYDAVQSAQ 234

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +K VDV+I DTAGRL N + LM  + K++RV+++LD  APH V+ VLDA TGQNAL Q +
Sbjct: 235 SKGVDVVIADTAGRLQNKANLMQELEKVVRVMRKLDDTAPHEVMLVLDAGTGQNALSQAK 294

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F    G + L ++K+DGTA+GG +  I    ++PV F+GVGE I+DL PF  ++F
Sbjct: 295 IFQEAVGVSSLTLSKLDGTAKGGVIFAIAKELQLPVRFIGVGEQIDDLRPFNHEEF 350


>gi|297180323|gb|ADI16541.1| hypothetical protein [uncultured bacterium HF4000_009C18]
          Length = 304

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 125/281 (44%), Positives = 182/281 (64%), Gaps = 1/281 (0%)

Query: 31  GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL-TKRYAKDVSVQRVLYDVS 89
           G+ D+I  +++D+ +  ELED LI+SD+GV  A+++ E+   TK   K V    +    S
Sbjct: 21  GLNDLIFKKKIDENMLNELEDFLIQSDVGVESAKELREKFANTKVNPKTVEKDEIFKIFS 80

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
             +H++L PL K       ++P VIL+ GVNGVGKTT IGKL K +     K++L A DT
Sbjct: 81  NYVHEILKPLEKNLENINKNKPCVILIAGVNGVGKTTTIGKLGKILGQNNKKIVLGAADT 140

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AA+ QL++WA R +AD + S+ G+D A++AY+A   A+    D L+IDTAGRL N  
Sbjct: 141 FRAAAVSQLEVWAKRINADIIKSDEGADPASVAYKALDHAKKNNFDYLLIDTAGRLQNKK 200

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM    K+ +VLK++D +APH    +LDATTGQNA+ QVE F  ++  TG+IMTK+DGT
Sbjct: 201 NLMDEFKKITKVLKKIDSNAPHETFLILDATTGQNAISQVEEFKKISPITGIIMTKLDGT 260

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           A+GG L+ I    K+P+  L +GE  +DL+ F ++ FS  +
Sbjct: 261 AKGGILLAIGKKFKLPIIALCMGEKEDDLQTFNSEYFSNAL 301


>gi|320326373|gb|EFW82426.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 498

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 192/305 (62%), Gaps = 2/305 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV  
Sbjct: 183 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 242

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I+  L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 243 TSVIINSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKVEHKPFVILVVGVNG 302

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 303 AGKTTTIGKLAKKLQLGGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 362

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 363 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 422

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 423 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 482

Query: 302 VAKDF 306
            A+ F
Sbjct: 483 EAEPF 487


>gi|160877397|ref|YP_001556713.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS195]
 gi|160862919|gb|ABX51453.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS195]
 gi|315269601|gb|ADT96454.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS678]
          Length = 540

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 126/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ L  +  
Sbjct: 237 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 296

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LYD+  E + K L P++ P   D ++ P VIL+VGVNGVGKTT IGKL+K+
Sbjct: 297 RKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTIGKLAKQ 356

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + A+A+KV
Sbjct: 357 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQAAKARKV 416

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N + LM  + K++RV+K+LDP  PH V+  LDA+TGQNA+ Q ++F  
Sbjct: 417 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPDTPHEVMLTLDASTGQNAISQAQLFQE 476

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TG+ ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F
Sbjct: 477 AVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 528


>gi|328472443|gb|EGF43309.1| signal recognition particle-docking protein FtsY [Vibrio
           parahaemolyticus 10329]
          Length = 403

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 197/304 (64%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 91  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 150

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY +  E + ++L  + +P + D S  P+VIL+VGVNGV
Sbjct: 151 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLDIDSSKTPYVILMVGVNGV 210

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 211 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 270

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 271 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 330

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 331 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFE 390

Query: 303 AKDF 306
            ++F
Sbjct: 391 TQEF 394


>gi|300721685|ref|YP_003710961.1| cell division protein [Xenorhabdus nematophila ATCC 19061]
 gi|297628178|emb|CBJ88733.1| cell division protein: membrane binding (N-terminal); GTPase domain
           (C-terminal) [Xenorhabdus nematophila ATCC 19061]
          Length = 465

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 192/307 (62%), Gaps = 2/307 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 151 LSKEQERPSKEGFFTRLKRSLVKTRQNLGSGFLSLFRGKKIDDELFEELEEQLLIADVGV 210

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               KI+  L      K++     LY  + E +  +L+ + KP   +    P+VIL+VGV
Sbjct: 211 ETTSKIITSLTAHASRKELKDAEALYSKLKEEMSDILVKVDKPLEIE-GKSPYVILMVGV 269

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D A
Sbjct: 270 NGVGKTTTIGKLARQYQSQGKSVMLAAGDTFRAAAVEQLQVWGDRNKIPVVAQHTGADPA 329

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+AK VD+LI DTAGRL N S LM  + K++RV+K+LD  APH ++  LDA
Sbjct: 330 SVIFDAIQSAKAKGVDILIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEIMLTLDA 389

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL 
Sbjct: 390 STGQNAVSQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLR 449

Query: 300 PFVAKDF 306
           PF A DF
Sbjct: 450 PFKADDF 456


>gi|221133909|ref|ZP_03560214.1| signal recognition particle GTPase [Glaciecola sp. HTCC2999]
          Length = 367

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 187/299 (62%), Gaps = 6/299 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           +   L    + T   +  GI D+   R +DD + E+LE  L+ +D+G+   Q I+E L  
Sbjct: 61  FFSSLAAKLSRTKESIGSGIADLFVGRSIDDELYEDLETQLLVADVGMDTTQNIIEHLTQ 120

Query: 72  -TKRYA---KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            TKR      +  +  +   + EL+  +  PL  P   +    P VIL+VGVNGVGKTT 
Sbjct: 121 STKRSTLKNGEALLGELKAYMGELLTNIEAPLI-PVVPEGKKGPFVILMVGVNGVGKTTT 179

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGK++K+    G KVMLAAGDTFR+AA++QL++W +R     V    G+D+A++ Y+A +
Sbjct: 180 IGKMAKQFQQDGKKVMLAAGDTFRAAAVEQLQVWGERNDIPVVAQHTGADSASVLYDAIQ 239

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            AQAK +DVLI DTAGRL N   LM  + K++RV+++++P APH ++  +DA TGQNA+ 
Sbjct: 240 SAQAKNIDVLIADTAGRLQNKDYLMQELEKVVRVIRKINPDAPHEIMLTIDAGTGQNAIS 299

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++FH   G TG+ ++K+DGTA+GG +  I     IPV ++GVGE I+DL PF A +F
Sbjct: 300 QAKLFHDAVGLTGITLSKLDGTAKGGVIFSIADQFSIPVRYIGVGEAIDDLRPFQATEF 358


>gi|330965439|gb|EGH65699.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 514

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 127/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV     I++ 
Sbjct: 206 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 265

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG GKTT I
Sbjct: 266 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTTI 325

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + 
Sbjct: 326 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 385

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q
Sbjct: 386 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 445

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F
Sbjct: 446 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 503


>gi|71736424|ref|YP_276881.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71556977|gb|AAZ36188.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 500

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 192/305 (62%), Gaps = 2/305 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV  
Sbjct: 185 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 244

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I+  L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 245 TSVIINSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKVEHKPFVILVVGVNG 304

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 305 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 364

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 365 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 424

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 425 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 484

Query: 302 VAKDF 306
            A+ F
Sbjct: 485 EAEPF 489


>gi|319428376|gb|ADV56450.1| signal recognition particle-docking protein FtsY [Shewanella
           putrefaciens 200]
          Length = 480

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 127/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    +++ +L     
Sbjct: 177 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLINKLTEHAS 236

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LYD+  + + K L P++ P   + ++ P VIL+VGVNGVGKTT IGKL+K+
Sbjct: 237 RKQLKDAEALYDLLRDELQKTLDPVAIPLVPNNANGPFVILMVGVNGVGKTTTIGKLAKQ 296

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A++ ++A + A+A+KV
Sbjct: 297 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVVAQHTGADSASVLFDALQAAKARKV 356

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N + LM  + K++RV+K+LDP APH V+  LDA+TGQNA+ Q ++F  
Sbjct: 357 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAQLFQE 416

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TGL ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F
Sbjct: 417 AVGVTGLTISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 468


>gi|146291397|ref|YP_001181821.1| signal recognition particle-docking protein FtsY [Shewanella
           putrefaciens CN-32]
 gi|145563087|gb|ABP74022.1| signal recognition particle-docking protein FtsY [Shewanella
           putrefaciens CN-32]
          Length = 482

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 127/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    +++ +L     
Sbjct: 179 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLINKLTEHAS 238

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LYD+  + + K L P++ P   + ++ P VIL+VGVNGVGKTT IGKL+K+
Sbjct: 239 RKQLKDAEALYDLLRDELQKTLDPVAIPLVPNNANGPFVILMVGVNGVGKTTTIGKLAKQ 298

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A++ ++A + A+A+KV
Sbjct: 299 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVVAQHTGADSASVLFDALQAAKARKV 358

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N + LM  + K++RV+K+LDP APH V+  LDA+TGQNA+ Q ++F  
Sbjct: 359 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAQLFQE 418

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TGL ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F
Sbjct: 419 AVGVTGLTISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 470


>gi|289648495|ref|ZP_06479838.1| cell division transporter substrate-binding protein FtsY
           [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 494

 Score =  246 bits (627), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 193/305 (63%), Gaps = 2/305 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV  
Sbjct: 179 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 238

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 239 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 298

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 299 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 358

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 359 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 418

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 419 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 478

Query: 302 VAKDF 306
            A+ F
Sbjct: 479 EAEPF 483


>gi|127514534|ref|YP_001095731.1| signal recognition particle-docking protein FtsY [Shewanella
           loihica PV-4]
 gi|126639829|gb|ABO25472.1| signal recognition particle-docking protein FtsY [Shewanella
           loihica PV-4]
          Length = 561

 Score =  246 bits (627), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 189/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    +++  L  
Sbjct: 255 FFARLKRGLKRTSENIGSGFIGLFKGKKIDDELFEELEEQLLIADVGVETTSRLIASLTE 314

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K +     LY++  E + K L P+S P   + S  P VIL+VGVNGVGKTT IGKL
Sbjct: 315 QASRKQLKDGEALYELMREEMQKTLEPVSIPLVPENSEGPFVILMVGVNGVGKTTTIGKL 374

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + A+A
Sbjct: 375 AKQYQQQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVLFDALQAARA 434

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K+D+LI DTAGRL N + LM  + K++RV+K+ D  APH V+  LDA+TGQNA+ Q ++
Sbjct: 435 RKIDILIADTAGRLQNKAHLMDELKKVVRVMKKQDESAPHEVMLTLDASTGQNAISQAQL 494

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F    G TG+ M+K+DGTA+GG +  I     IP+  +GVGE I+DL PF AKDF
Sbjct: 495 FKEAVGVTGITMSKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRPFDAKDF 549


>gi|289624656|ref|ZP_06457610.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|298485261|ref|ZP_07003354.1| signal recognition particle docking protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298160249|gb|EFI01277.1| signal recognition particle docking protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330871132|gb|EGH05841.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 496

 Score =  246 bits (627), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 193/305 (63%), Gaps = 2/305 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV  
Sbjct: 181 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 240

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 241 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 300

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 301 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 360

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 361 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 420

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 421 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 480

Query: 302 VAKDF 306
            A+ F
Sbjct: 481 EAEPF 485


>gi|323492926|ref|ZP_08098066.1| signal recognition particle-docking protein FtsY [Vibrio
           brasiliensis LMG 20546]
 gi|323312819|gb|EGA65943.1| signal recognition particle-docking protein FtsY [Vibrio
           brasiliensis LMG 20546]
          Length = 404

 Score =  246 bits (627), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/296 (43%), Positives = 196/296 (66%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  A T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+E L 
Sbjct: 100 SFFARLKRSLARTKANIGAGFFGLFKGKQIDDDLFEELEEQLLIADVGMDTTLKIIENLT 159

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   +++     LY +  E + ++L  + KP   D S  P+VIL+VGVNGVGKTT IGK
Sbjct: 160 EKASRQELKDGEALYGLLKEEMAEILSNVEKPLEVDSSKAPYVILMVGVNGVGKTTTIGK 219

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ Y+A + A+
Sbjct: 220 LAKQFQAEGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIYDAIESAK 279

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK VDV+I DTAGRL N + LM  + K++RV++++D  APH ++  LDA TGQNA+ Q +
Sbjct: 280 AKGVDVVIADTAGRLQNKANLMEELRKIVRVMQKVDGSAPHEIMLTLDAGTGQNAISQAK 339

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PF  ++F
Sbjct: 340 LFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFETQEF 395


>gi|257482993|ref|ZP_05637034.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331011768|gb|EGH91824.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 496

 Score =  246 bits (627), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 193/305 (63%), Gaps = 2/305 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV  
Sbjct: 181 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 240

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 241 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 300

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 301 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 360

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 361 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 420

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 421 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 480

Query: 302 VAKDF 306
            A+ F
Sbjct: 481 EAEPF 485


>gi|260899650|ref|ZP_05908045.1| cell division protein FtsY [Vibrio parahaemolyticus AQ4037]
 gi|308106736|gb|EFO44276.1| cell division protein FtsY [Vibrio parahaemolyticus AQ4037]
          Length = 411

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 196/304 (64%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 99  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 158

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY +  E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 159 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 218

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 219 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 278

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 279 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 338

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 339 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 398

Query: 303 AKDF 306
            ++F
Sbjct: 399 TQEF 402


>gi|260361295|ref|ZP_05774400.1| cell division protein FtsY [Vibrio parahaemolyticus K5030]
 gi|308111830|gb|EFO49370.1| cell division protein FtsY [Vibrio parahaemolyticus K5030]
          Length = 407

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 196/304 (64%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 95  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 154

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY +  E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 155 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 214

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 215 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 274

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 275 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 334

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 335 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 394

Query: 303 AKDF 306
            ++F
Sbjct: 395 TQEF 398


>gi|149909415|ref|ZP_01898070.1| signal recognition particle-docking protein FtsY [Moritella sp.
           PE36]
 gi|149807525|gb|EDM67474.1| signal recognition particle-docking protein FtsY [Moritella sp.
           PE36]
          Length = 451

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 192/295 (65%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +G + T   +  G       + +DD + EELE+ L+ +D+GVA  ++I++ L  
Sbjct: 146 FFTRLKRGLSRTKGNIGSGFKSFFRGKHIDDDLFEELEEQLLIADLGVATTKRIIDNLTQ 205

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K +     LYD+  + +  ML  + +P   D +++PHVIL+VGVNGVGKTT IGK+
Sbjct: 206 QASRKQLKDAEALYDILKKDMADMLHKVEQPLVIDSNNKPHVILMVGVNGVGKTTTIGKM 265

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +KK    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A++ ++A + A A
Sbjct: 266 AKKFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNGIPVVAQHTGADSASVLFDAMQSATA 325

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VDVLI DTAGRL N + LM  + K++RV+++ D  APH ++  +DA TGQNAL Q ++
Sbjct: 326 KDVDVLIADTAGRLQNKAHLMDELKKVVRVMRKHDATAPHEIMLTIDAGTGQNALSQAQL 385

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F    G TG+ +TK+DGTA+GG +  +    +IP+ F+G+GEGI+DL  F +++F
Sbjct: 386 FKEAVGLTGITITKLDGTAKGGVIFAVADKFEIPIRFIGIGEGIDDLRTFNSEEF 440


>gi|153840071|ref|ZP_01992738.1| cell division protein FtsY [Vibrio parahaemolyticus AQ3810]
 gi|149746343|gb|EDM57398.1| cell division protein FtsY [Vibrio parahaemolyticus AQ3810]
          Length = 403

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 196/304 (64%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 91  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 150

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY +  E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 151 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 210

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 211 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 270

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 271 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 330

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 331 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 390

Query: 303 AKDF 306
            ++F
Sbjct: 391 TQEF 394


>gi|28899730|ref|NP_799335.1| cell division protein FtsY [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879107|ref|ZP_05891462.1| cell division protein FtsY [Vibrio parahaemolyticus AN-5034]
 gi|260897983|ref|ZP_05906479.1| cell division protein FtsY [Vibrio parahaemolyticus Peru-466]
 gi|28807982|dbj|BAC61219.1| cell division protein FtsY [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087163|gb|EFO36858.1| cell division protein FtsY [Vibrio parahaemolyticus Peru-466]
 gi|308089649|gb|EFO39344.1| cell division protein FtsY [Vibrio parahaemolyticus AN-5034]
          Length = 405

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 196/304 (64%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 93  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 152

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY +  E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 153 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 212

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 213 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 272

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 273 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 332

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 333 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 392

Query: 303 AKDF 306
            ++F
Sbjct: 393 TQEF 396


>gi|66047975|ref|YP_237816.1| cell division transporter substrate-binding protein FtsY
           [Pseudomonas syringae pv. syringae B728a]
 gi|63258682|gb|AAY39778.1| Cell division transporter substrate-binding protein FtsY
           [Pseudomonas syringae pv. syringae B728a]
          Length = 505

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 127/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV     I++ 
Sbjct: 197 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 256

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG GKTT I
Sbjct: 257 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTTI 316

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + 
Sbjct: 317 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 376

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q
Sbjct: 377 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 436

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F
Sbjct: 437 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 494


>gi|28867657|ref|NP_790276.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850892|gb|AAO53971.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331014970|gb|EGH95026.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 513

 Score =  245 bits (626), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 127/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV     I++ 
Sbjct: 205 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 264

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG GKTT I
Sbjct: 265 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTTI 324

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + 
Sbjct: 325 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 384

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q
Sbjct: 385 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 444

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F
Sbjct: 445 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 502


>gi|302187229|ref|ZP_07263902.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. syringae 642]
          Length = 502

 Score =  245 bits (626), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 127/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV     I++ 
Sbjct: 194 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 253

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG GKTT I
Sbjct: 254 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHKPFVILVVGVNGAGKTTTI 313

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + 
Sbjct: 314 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 373

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q
Sbjct: 374 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 433

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F
Sbjct: 434 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 491


>gi|113972101|ref|YP_735894.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           MR-4]
 gi|113886785|gb|ABI40837.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           MR-4]
          Length = 582

 Score =  245 bits (626), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 126/296 (42%), Positives = 195/296 (65%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ L 
Sbjct: 275 SFFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTSRLIQSLT 334

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K +     LYD+  + + K L P++ P   + ++ P+VIL+VGVNGVGKTT IGK
Sbjct: 335 EHASRKQLKDAEALYDLLRDEMQKTLDPVAIPLVPENANGPYVILMVGVNGVGKTTTIGK 394

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + A+
Sbjct: 395 LAKQYQRQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQAAK 454

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K+D+LI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q +
Sbjct: 455 ARKIDILIADTAGRLQNKSHLMEELKKVVRVMKKLDLEAPHEVMLTLDASTGQNAISQAQ 514

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F    G TG+ ++K+DGTA+GG +  I    KIP+ ++GVGE I+DL  F +K+F
Sbjct: 515 LFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRTFNSKEF 570


>gi|320331637|gb|EFW87575.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330872359|gb|EGH06508.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 500

 Score =  245 bits (626), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 192/305 (62%), Gaps = 2/305 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV  
Sbjct: 185 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 244

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I+  L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 245 TSVIINSLTRKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKVEHKPFVILVVGVNG 304

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 305 AGKTTTIGKLAKKLQLGGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 364

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 365 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 424

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 425 GQNAINQAKQFNQTVMLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 484

Query: 302 VAKDF 306
            A+ F
Sbjct: 485 EAEPF 489


>gi|90581426|ref|ZP_01237221.1| putative cell division protein FtsY [Vibrio angustum S14]
 gi|90437403|gb|EAS62599.1| putative cell division protein FtsY [Vibrio angustum S14]
          Length = 459

 Score =  245 bits (626), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 127/298 (42%), Positives = 194/298 (65%), Gaps = 1/298 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           S  +  +L +G   T      G   + S +++DD + EELE+ L+ +D+G+    KI+E 
Sbjct: 153 SEGFFARLMRGLKKTKTNFGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTTLKIIEN 212

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K++     LY +  + +  ML  + +P   D S +P+VIL+VGVNGVGKTT I
Sbjct: 213 LTDKASKKELKDGEALYGLLKDELADMLAKVEQPLVIDTSKKPYVILMVGVNGVGKTTTI 272

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ ++A + 
Sbjct: 273 GKLAKQCQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIFDAIES 332

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK VDV+I DTAGRL N   LM  + K++RV+K++D  APH ++  +DA TGQNA+ Q
Sbjct: 333 AKAKNVDVVIADTAGRLQNKGNLMEELRKIVRVMKKVDVDAPHEIMLTVDAGTGQNAISQ 392

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            ++F  VA  +G+ +TK+DGTA+GG +  +     IP+ ++GVGEGI+DL PF A++F
Sbjct: 393 AKLFSDVAPVSGITITKLDGTAKGGVIFAVADQFNIPIRYIGVGEGIDDLRPFAAEEF 450


>gi|262372507|ref|ZP_06065786.1| signal recognition particle-docking protein FtsY [Acinetobacter
           junii SH205]
 gi|262312532|gb|EEY93617.1| signal recognition particle-docking protein FtsY [Acinetobacter
           junii SH205]
          Length = 379

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 132/305 (43%), Positives = 197/305 (64%), Gaps = 2/305 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           ++S  +  ++  G   T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I
Sbjct: 70  TKSTGFFGRMKDGLIKTRRSFTDGMVNILIGGKEIDDELLEEVEEQLLIADIGVEATKTI 129

Query: 67  VEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +  L  +    D+     LY V  E +  +L P  KP + D +  P+VIL+VGVNGVGKT
Sbjct: 130 IANLTERTARGDLIYSHALYKVLQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKT 189

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++A
Sbjct: 190 TTIGKLAKRLQAEGKKVMLAAGDTFRAAATEQLQIWGERNDIPVVAQGHGADSASVIFDA 249

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           F+ A+AK +DVLI DTAGRL N S LM  + K+ RV++++D  APH ++ ++DA TGQNA
Sbjct: 250 FESARAKGIDVLIADTAGRLQNKSNLMEELKKVKRVMQKIDATAPHEIMLIVDAGTGQNA 309

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV++F    G TG+ +TK+DGTA+GG L  I     +P+ ++G+GE I+DL PF AK 
Sbjct: 310 INQVQLFDEAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRYIGIGEKIDDLRPFSAKS 369

Query: 306 FSAVI 310
           F A +
Sbjct: 370 FVAAL 374


>gi|330970953|gb|EGH71019.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 499

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 127/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV     I++ 
Sbjct: 191 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 250

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG GKTT I
Sbjct: 251 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTTI 310

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + 
Sbjct: 311 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 370

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q
Sbjct: 371 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 430

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F
Sbjct: 431 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 488


>gi|120600697|ref|YP_965271.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           W3-18-1]
 gi|120560790|gb|ABM26717.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           W3-18-1]
          Length = 480

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 127/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    +++ +L     
Sbjct: 177 RLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLINKLTEHAS 236

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LYD+  + + K L P++ P   + ++ P VIL+VGVNGVGKTT IGKL+K+
Sbjct: 237 RKQLKDAEALYDLLRDELQKTLDPVAIPLVPNNANGPFVILMVGVNGVGKTTTIGKLAKQ 296

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A++ ++A + A+A+KV
Sbjct: 297 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVVAQHTGADSASVLFDALQAAKARKV 356

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N + LM  + K++RV+K+LDP APH V+  LDA+TGQNA+ Q ++F  
Sbjct: 357 DVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQAKLFQE 416

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TGL ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F
Sbjct: 417 AVGVTGLTISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEF 468


>gi|330874697|gb|EGH08846.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 516

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 126/298 (42%), Positives = 190/298 (63%), Gaps = 2/298 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV     I++ 
Sbjct: 208 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 267

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K ++  + LY  +   +  +L P+ +P      H+P VILVVGVNG GKTT I
Sbjct: 268 LTQKVARKQLTDAQALYTSLQAELAALLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTTI 327

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + 
Sbjct: 328 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 387

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q
Sbjct: 388 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 447

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F
Sbjct: 448 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 505


>gi|223041714|ref|ZP_03611908.1| cell division protein FtsY-like protein [Actinobacillus minor 202]
 gi|223017458|gb|EEF15875.1| cell division protein FtsY-like protein [Actinobacillus minor 202]
          Length = 517

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 127/298 (42%), Positives = 193/298 (64%), Gaps = 7/298 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-- 70
           +  +L +G   T   +  G  +    +++DD + EELE+ L+ +D+G+    KI+  L  
Sbjct: 211 FFSRLIQGLIKTKQSIGSGFFNFFRGKKIDDELFEELEEQLLIADLGMPTTTKIINNLSQ 270

Query: 71  -LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
             TK+  KD      LY +  E +  +L P+++P   D S +P+VIL+VGVNGVGKTT I
Sbjct: 271 HATKQQLKDADA---LYQLLKEELADVLKPVARPLEIDTSKKPYVILMVGVNGVGKTTTI 327

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+++  + G  VMLAAGDTFR+AA++QL++W +R +   +    GSD+A++ ++A + 
Sbjct: 328 GKLARQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQTSGSDSASVIFDAMQS 387

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A AK +DVLI DTAGRL N + LM  + K++RV+++ D  APH ++  LDA TGQNA+ Q
Sbjct: 388 ASAKNIDVLIADTAGRLQNKNNLMDELKKIVRVMQKYDETAPHEIMLTLDAGTGQNAISQ 447

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            ++F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF A++F
Sbjct: 448 AKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 505


>gi|323144388|ref|ZP_08078996.1| signal recognition particle-docking protein FtsY [Succinatimonas
           hippei YIT 12066]
 gi|322415841|gb|EFY06567.1| signal recognition particle-docking protein FtsY [Succinatimonas
           hippei YIT 12066]
          Length = 507

 Score =  245 bits (625), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 127/306 (41%), Positives = 189/306 (61%), Gaps = 18/306 (5%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE LS+  +L +   + S+    G++  +  R++D+ + EELE  L+ +D+GV     ++
Sbjct: 204 SEKLSFFERLKRTRENISM----GLSSFMKGRKIDEDLYEELETALLTADLGVETTNFVI 259

Query: 68  EELLTKRYAKDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           E+L      ++ S  R L+D       + +++  +L P   P       +P VIL+VGVN
Sbjct: 260 EKL------REESKLRELHDAVLLKKNLKDILKNILKPCEIPLEV-TGKKPFVILMVGVN 312

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL++K  D GLKVMLAAGDTFR+AA++QLK W +R +   +    GSD+A+
Sbjct: 313 GAGKTTTIGKLARKYQDLGLKVMLAAGDTFRAAAVEQLKEWGNRANVPVIAQATGSDSAS 372

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A   A+A+  DVLI DTAGRL N   LM  + K++RV+K++D   PH VL VLDAT
Sbjct: 373 VLFDAVNAAKARNTDVLICDTAGRLQNKDNLMEELKKIVRVMKKIDEEVPHEVLLVLDAT 432

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q  +F      TG+ +TK+DGTA+GG +  +    K+P+ ++G+GE   DL P
Sbjct: 433 TGQNAVSQATLFGKAVPITGICLTKLDGTAKGGVIFTLADKFKLPIRYVGIGEKAEDLRP 492

Query: 301 FVAKDF 306
           F A  F
Sbjct: 493 FKADIF 498


>gi|33152121|ref|NP_873474.1| cell division protein FtsY [Haemophilus ducreyi 35000HP]
 gi|33148343|gb|AAP95863.1| cell division protein FtsY [Haemophilus ducreyi 35000HP]
          Length = 519

 Score =  245 bits (625), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 127/307 (41%), Positives = 194/307 (63%), Gaps = 4/307 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +          +++DD + EELE+ L+ +D+G+    KI++ L T
Sbjct: 216 FFSRLLKGLIKTKQNIGSNFRQFFRGKKIDDELFEELEERLLMADLGMPTTTKIIQNLTT 275

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +    +LY   ++ +  +L P+ KP   D   +P+VIL+VGVNGVGKTT IGKL
Sbjct: 276 HATKKQLKDADLLYQQLKIELANVLKPIDKPLEIDPLTKPYVILMVGVNGVGKTTTIGKL 335

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +KK  D G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ ++A + A +
Sbjct: 336 AKKFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQTTGADSASVIFDAMQSAAS 395

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D+LI DTAGRL N + LM  + K++RV+K+ +  APH ++  LDA TGQNA+ Q ++
Sbjct: 396 KGIDILIADTAGRLQNKNHLMDELKKIVRVMKKYNESAPHEIMLTLDAGTGQNAISQAKL 455

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL PF A++F   I 
Sbjct: 456 FNEATGLTGITLTKLDGTAKGGVIFAIADQFNLPIRFIGVGEKIDDLRPFNAEEF---ID 512

Query: 312 GCLDYGE 318
              +Y E
Sbjct: 513 ALFEYDE 519


>gi|218710918|ref|YP_002418539.1| cell division protein FtxY [Vibrio splendidus LGP32]
 gi|218323937|emb|CAV20299.1| Cell division protein ftsY [Vibrio splendidus LGP32]
          Length = 422

 Score =  245 bits (625), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 118/252 (46%), Positives = 171/252 (67%), Gaps = 1/252 (0%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+G+    KI+E L  K    D+     LY +  E + ++L  + +P   D +  P+VI
Sbjct: 162 ADVGMNTTVKIIENLTEKASRNDLKDGEALYGLLKEEMSEILSQVEQPLVVDTTKTPYVI 221

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNGVGKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W  R     +    
Sbjct: 222 LMVGVNGVGKTTTIGKLAKQFQSEGKKVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHT 281

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D+A++ Y+A + A+A+ VDV+I DTAGRL N S LM  + K++RV+K++D  APH ++
Sbjct: 282 GADSASVIYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIM 341

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
             LDA TGQNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEG
Sbjct: 342 LTLDAGTGQNAISQAKLFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRYIGVGEG 401

Query: 295 INDLEPFVAKDF 306
           I+DL PF +KDF
Sbjct: 402 IDDLRPFESKDF 413


>gi|237802351|ref|ZP_04590812.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331025208|gb|EGI05264.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 514

 Score =  244 bits (624), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 193/305 (63%), Gaps = 2/305 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV  
Sbjct: 199 QESEAGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 258

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 259 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHKPFVILVVGVNG 318

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 319 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 378

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 379 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 438

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 439 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 498

Query: 302 VAKDF 306
            A+ F
Sbjct: 499 EAEPF 503


>gi|240949098|ref|ZP_04753446.1| cell division protein FtsY-like protein [Actinobacillus minor
           NM305]
 gi|240296493|gb|EER47125.1| cell division protein FtsY-like protein [Actinobacillus minor
           NM305]
          Length = 517

 Score =  244 bits (624), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 127/298 (42%), Positives = 193/298 (64%), Gaps = 7/298 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-- 70
           +  +L +G   T   +  G  +    +++DD + EELE+ L+ +D+G+    KI+  L  
Sbjct: 211 FFSRLIQGLIKTKQSIGSGFFNFFRGKKIDDELFEELEEQLLIADLGMPTTTKIINNLSQ 270

Query: 71  -LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
             TK+  KD      LY +  E +  +L P+++P   D S +P+VIL+VGVNGVGKTT I
Sbjct: 271 HATKQQLKDADA---LYQLLKEELADVLKPVARPLEIDTSKKPYVILMVGVNGVGKTTTI 327

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+++  + G  VMLAAGDTFR+AA++QL++W +R +   +    GSD+A++ ++A + 
Sbjct: 328 GKLARQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQTSGSDSASVIFDAMQS 387

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A AK +DVLI DTAGRL N + LM  + K++RV+++ D  APH ++  LDA TGQNA+ Q
Sbjct: 388 ASAKNIDVLIADTAGRLQNKNNLMDELKKIVRVMQKYDETAPHEIMLTLDAGTGQNAISQ 447

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            ++F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF A++F
Sbjct: 448 AKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 505


>gi|225677364|ref|ZP_03788335.1| signal recognition particle docking protein FtsY [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225590591|gb|EEH11847.1| signal recognition particle docking protein FtsY [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 303

 Score =  244 bits (624), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 134/304 (44%), Positives = 192/304 (63%), Gaps = 3/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S    L KG   TS +   G+  I S+++ LD  + +ELE+LLI  DIG   ++ I++ 
Sbjct: 1   MSLFGNLYKGLLKTSSRFSNGVKSIFSNKKKLDQSLLDELEELLISMDIGHKTSKLIIDR 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + ++ K+V    +   +   I  +L P+ +P     + +PH+I+V GVNG GKTT IG
Sbjct: 61  LTSIKFDKEVEYNIISQQLMNEIEAILSPVVQPL--ILNKKPHIIMVCGVNGNGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K  + G  VML A DTFR+AA +QL IWA+R+    V  E GSD+A++AY A  QA
Sbjct: 119 KLAYKYKEMGKSVMLVACDTFRAAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
               VDV++IDTAGRL NN  LM  + K+ R +K+LD  APH V+ VLDATTGQNA  Q+
Sbjct: 179 IKDNVDVVLIDTAGRLQNNVNLMEELSKIYRTIKKLDDTAPHDVILVLDATTGQNAYSQL 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F  +   TGLI+TK+DGTA+GG +I +   +KI ++ +G+GE I DL  F +K+F+  
Sbjct: 239 EAFSKMVNVTGLIVTKLDGTAKGGVVIGLAEAYKIKLHAIGIGENIEDLREFTSKEFAEA 298

Query: 310 ITGC 313
           +  C
Sbjct: 299 LFNC 302


>gi|42520719|ref|NP_966634.1| cell division ABC transporter, periplasmic substrate-binding
           protein FtsY [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410459|gb|AAS14568.1| cell division ABC transporter, periplasmic substrate-binding
           protein FtsY [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 303

 Score =  244 bits (624), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 133/304 (43%), Positives = 191/304 (62%), Gaps = 3/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S    L +G   TS +  +G+  I S  ++LD  + +ELE+LLI  DIG   ++ I++ 
Sbjct: 1   MSLFSNLYQGLLKTSSRFSDGVKSIFSGKKKLDQSLLDELEELLISMDIGHKTSKLIIDR 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + ++ K+V    +   +   I  +L P  +P     + +PH+I+V GVNG GKTT IG
Sbjct: 61  LTSIKFDKEVEYNTITQQLMSEIESILNPAVQPL--ILNKKPHIIMVCGVNGNGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K  + G  VML A DTFR+AA +QL IWA+R+    V  E GSD+A++AY A  QA
Sbjct: 119 KLAYKYKEMGKSVMLVACDTFRAAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
               VDV++IDTAGRL NN  LM  + K+ R +K+LD  APH V+ VLDATTGQNA  Q+
Sbjct: 179 IKDNVDVVLIDTAGRLQNNVNLMEELSKIYRTIKKLDDTAPHDVILVLDATTGQNAYSQL 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F  +   TGLI+TK+DGTA+GG +I +   +KI ++ +G+GE I DL  F +K+F+  
Sbjct: 239 EAFSKMVNVTGLIVTKLDGTAKGGVVIGLAEAYKIKLHAIGIGENIEDLREFTSKEFAEA 298

Query: 310 ITGC 313
           +  C
Sbjct: 299 LFNC 302


>gi|219669784|ref|YP_002460219.1| signal recognition particle-docking protein FtsY
           [Desulfitobacterium hafniense DCB-2]
 gi|219540044|gb|ACL21783.1| signal recognition particle-docking protein FtsY
           [Desulfitobacterium hafniense DCB-2]
          Length = 320

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 144/315 (45%), Positives = 212/315 (67%), Gaps = 11/315 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEEL- 70
           +  KL  G   T  +    + +I++ RR +D+ + EELE++LIRSD+GV  + ++VE L 
Sbjct: 11  FFTKLKAGLTKTRDQFVTKVEEILTGRRKIDEELYEELEEVLIRSDVGVNTSFELVEGLR 70

Query: 71  --LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTV 127
             + KR  ++    +V+  + ELI ++L    +  + +F+ H P + LVVGVNGVGKTT 
Sbjct: 71  KEVKKRKLQEAEELKVV--LQELIAELL---GEEESMNFAEHGPSIFLVVGVNGVGKTTT 125

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+    + G KV+LAAGDTFR+AAIDQL++W  R   + +  + G+D AA+AY+A +
Sbjct: 126 IGKLAHYFQEEGKKVILAAGDTFRAAAIDQLEVWGQRAGVEVIKQKEGADPAAVAYDALQ 185

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+++  D++I+DTAGRLHN   LM  + K+ RV++R  P APH VL VLDATTGQNAL+
Sbjct: 186 AAKSRGADLVIMDTAGRLHNKVNLMEELRKVKRVIEREIPGAPHEVLLVLDATTGQNALQ 245

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF- 306
           Q ++F  VAG TG+++TK+DGTA+GG ++ I     IPV ++GVGEG+ DL PF+ +DF 
Sbjct: 246 QAKLFQEVAGVTGIVLTKLDGTAKGGVVLGIQGEINIPVKWIGVGEGMEDLRPFIPQDFA 305

Query: 307 SAVITGCLDYGEEKI 321
           SA+     D  EE+I
Sbjct: 306 SALFDQTQDDEEEEI 320


>gi|261250005|ref|ZP_05942582.1| signal recognition particle receptor protein FtsY [Vibrio
           orientalis CIP 102891]
 gi|260939509|gb|EEX95494.1| signal recognition particle receptor protein FtsY [Vibrio
           orientalis CIP 102891]
          Length = 406

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/296 (42%), Positives = 195/296 (65%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  A T   +  G   +   +++DD + EELE+ L+ +D+G+    KI++ L 
Sbjct: 102 SFFARLKRSLARTKANIGAGFFGLFKGKQIDDELFEELEEQLLIADVGMDTTLKIIDNLT 161

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   +D+     LY +  E + ++L  + KP   D S  P+VIL+VGVNGVGKTT IGK
Sbjct: 162 EKASRQDLKDGEALYGLLKEEMAEILSNVEKPLEVDSSKAPYVILMVGVNGVGKTTTIGK 221

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ Y+A + A+
Sbjct: 222 LAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIYDAIESAK 281

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK VDV+I DTAGRL N + LM  + K++RV++++D  APH ++  LDA TGQNA+ Q +
Sbjct: 282 AKGVDVVIADTAGRLQNKANLMEELRKIVRVMQKVDGSAPHEIMLTLDAGTGQNAISQAK 341

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PF  ++F
Sbjct: 342 LFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFETQEF 397


>gi|291288128|ref|YP_003504944.1| signal recognition particle-docking protein FtsY [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885288|gb|ADD68988.1| signal recognition particle-docking protein FtsY [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 380

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 141/305 (46%), Positives = 200/305 (65%), Gaps = 12/305 (3%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66
           +E   + ++L +G + TS KL  G+  I S ++ +D+ + EELE+L I SD+GV+   KI
Sbjct: 69  AEKPGFFKRLKQGLSKTSGKLVGGMETIFSGKKVIDEDLLEELEELFITSDVGVSTTMKI 128

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELI----HKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121
           ++ +      +D   ++ L +  EL      ++L  L  P   + +  +P+VILV GVNG
Sbjct: 129 IDNV------RDELSRKALKNPQELKASLRKQILNILDIPNELNTTDDKPYVILVAGVNG 182

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT I K++K+  + GL   LAAGDTFR+AAIDQL +WA R     V    GSD+AA+
Sbjct: 183 AGKTTSIAKMAKRFKEQGLSTCLAAGDTFRAAAIDQLCVWAKRVDVPVVKQSEGSDSAAV 242

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A +  ++KK+DVLI DTAGRLHN   LM  + K++R+ KR  P APH VL VLDAT+
Sbjct: 243 IFDAIQSCKSKKIDVLIADTAGRLHNKFNLMKEMEKIVRIAKRELPDAPHEVLLVLDATS 302

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + FH   G TGL++TK+DGTA+GG +I IV   +IPV F+G GEGI+D++PF
Sbjct: 303 GQNALSQAQKFHEDIGITGLVLTKLDGTAKGGAVIGIVDELQIPVKFIGFGEGIDDMKPF 362

Query: 302 VAKDF 306
            A+DF
Sbjct: 363 SAEDF 367


>gi|114561463|ref|YP_748976.1| signal recognition particle-docking protein FtsY [Shewanella
           frigidimarina NCIMB 400]
 gi|114332756|gb|ABI70138.1| signal recognition particle-docking protein FtsY [Shewanella
           frigidimarina NCIMB 400]
          Length = 587

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/292 (43%), Positives = 191/292 (65%), Gaps = 1/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +G   TS  +  G   +   +++++ + EELE+ L+ +D+GV    K+++ L     
Sbjct: 284 RLKRGLMRTSENIGSGFIGLFRGKKINEELFEELEEQLLIADVGVETTNKLIKSLTEHAS 343

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LYD+  E + KML P++ P   D ++ P VIL++GVNGVGKTT IGKL+K+
Sbjct: 344 RKQLKDAEALYDLMREEMQKMLDPVAIPLVPDNANGPFVILMIGVNGVGKTTTIGKLAKQ 403

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + A+A+KV
Sbjct: 404 YQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVIFDALQAAKARKV 463

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N S LM  + K++RV+K+LDP +PH V+  LDA+TGQNA+ Q ++F  
Sbjct: 464 DVLIADTAGRLQNKSHLMEELKKVVRVMKKLDPDSPHEVMLTLDASTGQNAISQAQLFKE 523

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  F + DF
Sbjct: 524 AVGVTGITISKLDGTAKGGVIFAIADKFSIPIRHIGVGEQIDDLRTFNSNDF 575


>gi|119776600|ref|YP_929340.1| cell division protein FtsY [Shewanella amazonensis SB2B]
 gi|119769100|gb|ABM01671.1| signal recognition particle-docking protein FtsY [Shewanella
           amazonensis SB2B]
          Length = 563

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 130/298 (43%), Positives = 194/298 (65%), Gaps = 7/298 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           +  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    K+++ L  
Sbjct: 256 FFARLKRGLMRTSENIGSGFIGLFRGKKIDDELFEELEEQLLIADVGVETTSKLIKSLTE 315

Query: 72  --TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
             ++R  KD      LY++  E + + L P+S P   + +  P+VIL+VGVNGVGKTT I
Sbjct: 316 HASRRQLKDAEA---LYELLREEMQRTLEPVSVPLVPENAQGPYVILMVGVNGVGKTTTI 372

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + 
Sbjct: 373 GKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQS 432

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q
Sbjct: 433 AKAKGVDVLICDTAGRLQNKNHLMEELKKVVRVMKKLDESAPHEVMLTLDASTGQNAISQ 492

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            ++F    G TG+ +TK+DGTA+GG +  I     IP+ ++GVGE I+DL  F A+DF
Sbjct: 493 AKLFQEAVGVTGISITKLDGTAKGGVIFAIADKFGIPIRYIGVGEQIDDLRVFNARDF 550


>gi|307128891|ref|YP_003880907.1| signal recognition particle (SRP) receptor [Dickeya dadantii 3937]
 gi|306526420|gb|ADM96350.1| signal recognition particle (SRP) receptor [Dickeya dadantii 3937]
          Length = 446

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/297 (42%), Positives = 189/297 (63%), Gaps = 6/297 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   +KI++ L  
Sbjct: 144 FFARLKRSLVKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGVETTRKIIDRLTE 203

Query: 72  --TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +++  KD      L      +  +L  +  P + D S  P VIL+VGVNGVGKTT IG
Sbjct: 204 HASRKQLKDAEALIALLKAE--MSDILAKVDAPLDID-SKTPFVILMVGVNGVGKTTTIG 260

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + A
Sbjct: 261 KLARQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSASVIFDALQAA 320

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ VDVLI DTAGRL N S LM  + K++RV+K+LD +APH V+  LDA+TGQNA+ Q 
Sbjct: 321 RARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEVMLTLDASTGQNAVSQA 380

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++F+   G +G+ +TK+DGTA+GG +  I     IP+ ++GVGE I+DL PF A DF
Sbjct: 381 KLFNETVGLSGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGESIDDLRPFKADDF 437


>gi|323498060|ref|ZP_08103066.1| signal recognition particle-docking protein FtsY [Vibrio
           sinaloensis DSM 21326]
 gi|323316868|gb|EGA69873.1| signal recognition particle-docking protein FtsY [Vibrio
           sinaloensis DSM 21326]
          Length = 404

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/296 (42%), Positives = 194/296 (65%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  A T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+E L 
Sbjct: 100 SFFARLKRSLARTKANIGAGFFGLFKGKQIDDDLFEELEEQLLIADVGMDTTLKIIENLT 159

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   +++     LY +  E + ++L  + +P   D S  P+VIL+VGVNGVGKTT IGK
Sbjct: 160 EKASRQELKDGEALYGLLKEEMAEILSNVEQPLQVDTSKTPYVILMVGVNGVGKTTTIGK 219

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ Y+A + A+
Sbjct: 220 LAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNGVPVVAQHTGADSASVIYDAIESAK 279

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 280 AKGVDVVIADTAGRLQNKANLMEELRKIVRVMKKVDDSAPHEIMLTLDAGTGQNAISQAK 339

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PF  ++F
Sbjct: 340 LFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFETQEF 395


>gi|86148197|ref|ZP_01066495.1| cell division protein FtsY [Vibrio sp. MED222]
 gi|85834044|gb|EAQ52204.1| cell division protein FtsY [Vibrio sp. MED222]
          Length = 422

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/252 (46%), Positives = 171/252 (67%), Gaps = 1/252 (0%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+G+    KI+E L  K    D+     LY +  E + ++L  + +P   D +  P+VI
Sbjct: 162 ADVGMNTTVKIIENLTEKASRNDLKDGEALYGLLKEEMSEILSQVEQPLVVDTTKTPYVI 221

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNGVGKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W  R     +    
Sbjct: 222 LMVGVNGVGKTTTIGKLAKQFQSEGKKVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHT 281

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D+A++ Y+A + A+A+ VDV+I DTAGRL N S LM  + K++RV+K++D  APH ++
Sbjct: 282 GADSASVIYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIM 341

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
             LDA TGQNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEG
Sbjct: 342 LTLDAGTGQNAISQAKLFSDVAPVTGITLTKLDGTAKGGVIFSIADLFQIPIRYIGVGEG 401

Query: 295 INDLEPFVAKDF 306
           I+DL PF +KDF
Sbjct: 402 IDDLRPFESKDF 413


>gi|226952926|ref|ZP_03823390.1| signal recognition particle-docking protein FtsY [Acinetobacter sp.
           ATCC 27244]
 gi|226836247|gb|EEH68630.1| signal recognition particle-docking protein FtsY [Acinetobacter sp.
           ATCC 27244]
          Length = 371

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 132/304 (43%), Positives = 196/304 (64%), Gaps = 2/304 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +S  +  ++  G   T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I+
Sbjct: 63  KSGGFFGRMKDGLTKTRRSFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTII 122

Query: 68  EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
             L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVGKTT
Sbjct: 123 ANLTERTARGDLIYSHALYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTT 182

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++AF
Sbjct: 183 TIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIPVVAQGHGADSASVIFDAF 242

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+AK +DVLI DTAGRL N S LM  + K+ RV++++D  APH ++ ++DA TGQNA+
Sbjct: 243 ESARAKGIDVLIADTAGRLQNKSHLMEELKKVKRVMQKIDATAPHEIMLIVDAGTGQNAI 302

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QV++F    G TG+ +TK+DGTA+GG L  I     +P+ ++GVGE I+DL PF AK F
Sbjct: 303 NQVQLFDEAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRYIGVGEKIDDLRPFSAKSF 362

Query: 307 SAVI 310
            A +
Sbjct: 363 VAAL 366


>gi|294650502|ref|ZP_06727861.1| signal recognition particle-docking protein FtsY [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823645|gb|EFF82489.1| signal recognition particle-docking protein FtsY [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 371

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 132/304 (43%), Positives = 196/304 (64%), Gaps = 2/304 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +S  +  ++  G   T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I+
Sbjct: 63  KSGGFFGRMKDGLTKTRRSFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTII 122

Query: 68  EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
             L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVGKTT
Sbjct: 123 ANLTERTARGDLIYSHALYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTT 182

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++AF
Sbjct: 183 TIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIPVVAQGHGADSASVIFDAF 242

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+AK +DVLI DTAGRL N S LM  + K+ RV++++D  APH ++ ++DA TGQNA+
Sbjct: 243 ESARAKGIDVLIADTAGRLQNKSHLMEELKKVKRVMQKIDATAPHEIMLIVDAGTGQNAI 302

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QV++F    G TG+ +TK+DGTA+GG L  I     +P+ ++GVGE I+DL PF AK F
Sbjct: 303 NQVQLFDEAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRYIGVGEKIDDLRPFSAKSF 362

Query: 307 SAVI 310
            A +
Sbjct: 363 VAAL 366


>gi|84393534|ref|ZP_00992288.1| Signal recognition particle GTPase [Vibrio splendidus 12B01]
 gi|84375813|gb|EAP92706.1| Signal recognition particle GTPase [Vibrio splendidus 12B01]
          Length = 417

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/252 (46%), Positives = 171/252 (67%), Gaps = 1/252 (0%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+G+    KI+E L  K    D+     LY +  E +  +L  + +P   D +  P+VI
Sbjct: 157 ADVGMNTTVKIIENLTEKASRNDLKDGEALYGLLKEEMADILSQVEQPLVVDTTKTPYVI 216

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNGVGKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W  R +   +    
Sbjct: 217 LMVGVNGVGKTTTIGKLAKQFQSEGKKVMLAAGDTFRAAAVEQLQVWGQRNNVPVIAQHT 276

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D+A++ Y+A + A+A+ VDV+I DTAGRL N S LM  + K++RV+K++D  APH ++
Sbjct: 277 GADSASVIYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIM 336

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
             LDA TGQNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEG
Sbjct: 337 LTLDAGTGQNAISQAKLFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRYIGVGEG 396

Query: 295 INDLEPFVAKDF 306
           I+DL PF +KDF
Sbjct: 397 IDDLRPFESKDF 408


>gi|294085381|ref|YP_003552141.1| cell division protein ftsY [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664956|gb|ADE40057.1| cell division protein ftsY [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 309

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 130/305 (42%), Positives = 201/305 (65%), Gaps = 3/305 (0%)

Query: 11  LSWIRKLTKGFASTSLKLK---EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +SW +KL +G   ++ K+      ++++    R+D    EE+ED LI +D+G   AQ++ 
Sbjct: 1   MSWFKKLKEGLGKSTSKVTASLSSLSNLFGGARIDASSLEEVEDALISADLGTTSAQRLA 60

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + +   ++   +    +   +++ I ++L P+++    D +H PHV+L+VGVNG GKTT 
Sbjct: 61  DRMRRHKFEGPIDSDTLGQALADGITEILEPVAQKLEIDAAHAPHVVLLVGVNGSGKTTT 120

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+++  D G  VMLAAGDTFR+AAI+QL+IW  RT  + +    G DAAALAYEA +
Sbjct: 121 AGKLAQQWRDEGKSVMLAAGDTFRAAAIEQLQIWGARTGTEVIAGAQGGDAAALAYEALE 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+A  +DVLIIDTAGRL N + LM  + K++RV+++LD  APH  + +LD T GQNA+ 
Sbjct: 181 KAKAANIDVLIIDTAGRLQNRTELMDELAKIVRVMRKLDASAPHDSVIILDGTVGQNAIS 240

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QV+ F  VA  TGLI+TK+DG+A+GG ++ +     +PV+ +GVGE  +DL+PF A +F+
Sbjct: 241 QVKAFREVADVTGLIVTKLDGSAKGGVVVALAEEFGLPVHAVGVGEQADDLQPFAAAEFA 300

Query: 308 AVITG 312
             + G
Sbjct: 301 KALVG 305


>gi|260774826|ref|ZP_05883728.1| signal recognition particle receptor protein FtsY [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609251|gb|EEX35406.1| signal recognition particle receptor protein FtsY [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 411

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 127/296 (42%), Positives = 193/296 (65%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L    A T   +  G   +   +++DD + EELE+ L+ +D+G+    KI++ L 
Sbjct: 107 SFFARLKHSLARTKANIGAGFFGLFKDKQIDDELFEELEEQLLIADVGMDTTVKIIDNLT 166

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   +++     LY +  E +  +L  + KP   D +  P+VIL+VGVNGVGKTT IGK
Sbjct: 167 EKASRQELKDGEALYGLLKEEMAGILSTVEKPLEIDTNKTPYVILMVGVNGVGKTTTIGK 226

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     V    G+D+A++ Y+A + A+
Sbjct: 227 LAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVVAQHTGADSASVIYDAIESAK 286

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 287 AKGVDVVIADTAGRLQNKANLMEELRKIVRVMKKVDDSAPHEIMLTLDAGTGQNAISQAK 346

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PF  ++F
Sbjct: 347 LFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFETQEF 402


>gi|330447182|ref|ZP_08310832.1| signal recognition particle-docking protein FtsY [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491373|dbj|GAA05329.1| signal recognition particle-docking protein FtsY [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 458

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 126/298 (42%), Positives = 192/298 (64%), Gaps = 1/298 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           S  +  +L +G   T      G   + S +++DD + EELE+ L+ +D+G+    KI+E 
Sbjct: 152 SEGFFARLMRGLKKTKTNFGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTTLKIIEN 211

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K++     LY +  + +  ML  + +P   D S +P+VIL+VGVNGVGKTT I
Sbjct: 212 LTDKASRKELKDGEALYGLLKDELADMLSKVEQPLVVDTSKKPYVILMVGVNGVGKTTTI 271

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + 
Sbjct: 272 GKLAKQFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNHVPVVAQHTGADSASVIFDAIES 331

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK +DV+I DTAGRL N   LM  + K++RV+K++D  APH ++  +DA TGQNA+ Q
Sbjct: 332 AKAKNIDVVIADTAGRLQNKGNLMEELRKIVRVMKKVDVDAPHEIMLTVDAGTGQNAISQ 391

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            ++F  VA  +G+ +TK+DGTA+GG +  I     IP+ ++G+GEGI+DL PF A +F
Sbjct: 392 AKLFSDVAPVSGITITKLDGTAKGGVIFAIADQFNIPIRYIGIGEGIDDLRPFAADEF 449


>gi|89895351|ref|YP_518838.1| hypothetical protein DSY2605 [Desulfitobacterium hafniense Y51]
 gi|89334799|dbj|BAE84394.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 322

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 146/327 (44%), Positives = 214/327 (65%), Gaps = 11/327 (3%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59
           MS  K   +   +  KL  G   T  +    + +I++ RR +D+ + EELE++LIRSD+G
Sbjct: 1   MSMYKEEVQLAGFFTKLKNGLTKTRDQFVTKVEEILTGRRKIDEELYEELEEVLIRSDVG 60

Query: 60  VAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVIL 115
           V  +  +VE L   + KR  ++    +++  + ELI ++L    +  + +F+ H P + L
Sbjct: 61  VNTSFGLVEGLRKEVKKRKLQEAEELKIV--LQELIAELL---GEEESMNFAEHGPSIFL 115

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT IGKL+      G KV+LAAGDTFR+AAIDQL++W  R   + +  + G
Sbjct: 116 VVGVNGVGKTTTIGKLAHYFQGEGKKVILAAGDTFRAAAIDQLEVWGQRAGVEVIKQKEG 175

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D AA+AY+A + A+++  D++I+DTAGRLHN   LM  + K+ RV++R  P APH VL 
Sbjct: 176 ADPAAVAYDALQAAKSRGADLVIMDTAGRLHNKVNLMEELRKVKRVIEREIPGAPHEVLL 235

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNAL+Q ++F  VAG TG+++TK+DGTA+GG ++ I     IPV ++GVGEG+
Sbjct: 236 VLDATTGQNALQQAKLFQEVAGVTGIVLTKLDGTAKGGVVLGIQGEINIPVKWIGVGEGM 295

Query: 296 NDLEPFVAKDF-SAVITGCLDYGEEKI 321
            DL PF+ +DF SA+     D  EE+I
Sbjct: 296 EDLRPFIPQDFASALFDQTQDDEEEEI 322


>gi|293393950|ref|ZP_06638256.1| cell division protein FtsY [Serratia odorifera DSM 4582]
 gi|291423510|gb|EFE96733.1| cell division protein FtsY [Serratia odorifera DSM 4582]
          Length = 608

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 132/300 (44%), Positives = 193/300 (64%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+E L  
Sbjct: 306 FFARLKRSLIKTKQNLGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIESLTL 365

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
               K +     LY     ++SE++ K+  PL      D S + P+VIL+VGVNGVGKTT
Sbjct: 366 HASRKQLKDAEALYGKLKEEMSEILAKVDQPL------DVSGKTPYVILMVGVNGVGKTT 419

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A 
Sbjct: 420 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSASVIFDAV 479

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ VDVLI DTAGRL N + LM  + K++RV+K+LD HAPH V+  LDA+TGQNA+
Sbjct: 480 QAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEHAPHEVMLTLDASTGQNAV 539

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 540 SQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 599


>gi|271502549|ref|YP_003335575.1| signal recognition particle-docking protein FtsY [Dickeya dadantii
           Ech586]
 gi|270346104|gb|ACZ78869.1| signal recognition particle-docking protein FtsY [Dickeya dadantii
           Ech586]
          Length = 466

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 126/299 (42%), Positives = 192/299 (64%), Gaps = 10/299 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   +KI+  L  
Sbjct: 164 FFARLKRSLIKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGVETTRKIIARLTE 223

Query: 72  --TKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             +++  KD      L   ++S+++ K+ +PL+       S  P VIL+VGVNGVGKTT 
Sbjct: 224 HASRKQLKDAEALIALLKSEMSDILAKVDVPLAID-----SKTPFVILMVGVNGVGKTTT 278

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A +
Sbjct: 279 IGKLARQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSASVIFDALQ 338

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ 
Sbjct: 339 AAKARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAVS 398

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++F+   G +G+ +TK+DGTA+GG +  I     IP+ ++GVGE I+DL PF A DF
Sbjct: 399 QAKLFNEAVGLSGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGESIDDLRPFKADDF 457


>gi|319786795|ref|YP_004146270.1| signal recognition particle-docking protein FtsY [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465307|gb|ADV27039.1| signal recognition particle-docking protein FtsY [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 447

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/269 (46%), Positives = 176/269 (65%), Gaps = 3/269 (1%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLM 97
           +LDD + +E+E  L+ +D+GV     +VE L  +  A++ +  R L     +ELI  ML 
Sbjct: 169 KLDDDLLDEIETALLTADVGVTATTALVEGLRKRMKAREFADARALLTALRAELIA-MLQ 227

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P   D + RP V+L VGVNGVGKTT IGKL+++  D G  +MLAAGDTFR+AA+ Q
Sbjct: 228 PVARPLQIDPATRPFVLLTVGVNGVGKTTTIGKLARRFKDEGRSLMLAAGDTFRAAAVAQ 287

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+ W +R     +     +DAA++A++A + A+A+  +VLI DTAGRLH    LM  +GK
Sbjct: 288 LQAWGERNGVTVIAQGQNADAASVAFDALQAAKARGTEVLIADTAGRLHTQVGLMNELGK 347

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RVL++LDP APH VL V+D TTGQNAL Q+  F+A  G TGL++TK+DGTA+GG +  
Sbjct: 348 IKRVLQKLDPAAPHEVLMVIDGTTGQNALNQLRQFNAAVGVTGLVVTKLDGTAKGGVVFA 407

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +     IP+ F G+GE   DL  F  + F
Sbjct: 408 LAREFGIPIRFAGIGERPEDLRVFDPEAF 436


>gi|145630513|ref|ZP_01786293.1| cell division protein FtsY [Haemophilus influenzae R3021]
 gi|144983903|gb|EDJ91345.1| cell division protein FtsY [Haemophilus influenzae R3021]
          Length = 400

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KIV+ L  
Sbjct: 96  FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIVKNLTE 155

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 156 HASRKELQDAELLYQQLKVEMADILEPVARPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 215

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 216 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 275

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390


>gi|70733142|ref|YP_262915.1| signal recognition particle-docking protein FtsY [Pseudomonas
           fluorescens Pf-5]
 gi|68347441|gb|AAY95047.1| signal recognition particle-docking protein FtsY [Pseudomonas
           fluorescens Pf-5]
          Length = 497

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 193/305 (63%), Gaps = 3/305 (0%)

Query: 5   KVASES-LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           + A ES + +  +L +G + TS  + EG+  + +  + +DD + E+LE  L+ +D+GV  
Sbjct: 182 RPAEESKIGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDELLEDLETRLLTADVGVEA 241

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I++ L  K   K ++    LY  +   +  ML P+ +P      ++P VILVVGVNG
Sbjct: 242 TSVIIQNLTQKVARKQLTDSDALYASLQAELTSMLKPVEQPLQIVAQNKPFVILVVGVNG 301

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 302 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASV 361

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 362 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 421

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     +GL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 422 GQNAINQAKQFNQTVQLSGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 481

Query: 302 VAKDF 306
            A+ F
Sbjct: 482 EAEPF 486


>gi|119475398|ref|ZP_01615751.1| signal recognition particle receptor FtsY [marine gamma
           proteobacterium HTCC2143]
 gi|119451601|gb|EAW32834.1| signal recognition particle receptor FtsY [marine gamma
           proteobacterium HTCC2143]
          Length = 398

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 120/256 (46%), Positives = 174/256 (67%), Gaps = 1/256 (0%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+GV   + I+E L  +   ++++  + LY  + + + ++L    +P   D + +P+VI
Sbjct: 139 ADVGVEATRDIMETLAKQVSRRELADPQALYRGLQKELAELLEHSREPLQIDETKKPYVI 198

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           LVVGVNGVGKTT IGKL K+    G  VMLAAGDTFR+AA++QL++W +R +   +    
Sbjct: 199 LVVGVNGVGKTTTIGKLGKRFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHT 258

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D+A++ ++A + AQA+KVDVLI DTAGRLHN   LM  + K++RV+ +LD  APH V+
Sbjct: 259 GADSASVIFDAVQAAQARKVDVLIADTAGRLHNKDNLMEELKKVVRVMGKLDSTAPHEVM 318

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDA TGQNAL Q + F  V G TG+ +TK+DGTA+GG +  I    ++P+ F+GVGE 
Sbjct: 319 LVLDAGTGQNALSQAKAFQEVVGVTGITVTKLDGTAKGGIIFAISKQLQLPIRFIGVGEQ 378

Query: 295 INDLEPFVAKDFSAVI 310
           I+DL PF A DF A +
Sbjct: 379 IDDLRPFAADDFVAAL 394


>gi|58585012|ref|YP_198585.1| Signal recognition particle GTPase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58419328|gb|AAW71343.1| Signal recognition particle GTPase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 301

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 132/298 (44%), Positives = 192/298 (64%), Gaps = 3/298 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L +G   TS +  +G+  I S+++ LD  + +ELE+LLI  DIG   ++ I++ L + ++
Sbjct: 5   LYRGLLKTSSRFSDGVKSIFSAKKKLDQSLLDELEELLISMDIGHKTSKLIIDRLASIKF 64

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            K+V    +   +   I  +L P+ +P   D    PH+I+V GVNG GKTT IGKL+ K 
Sbjct: 65  DKEVEHNIITQQLMSEIEAILNPVVQPLILD--KNPHIIMVCGVNGNGKTTTIGKLAYKY 122

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
            + G  VML A DTFR+AA +QL IWA+R+    V  E G+D+A++AY A  QA    VD
Sbjct: 123 KNMGKSVMLVACDTFRAAASEQLNIWAERSDCFIVTGEYGNDSASVAYRAVSQAIKGSVD 182

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V++IDTAGRL NN  LM  + K+ R +K+LD  APH V+ VLDATTGQNA  Q+E F  +
Sbjct: 183 VVLIDTAGRLQNNVNLMEELSKIYRTIKKLDGTAPHDVILVLDATTGQNAYSQLEAFSKM 242

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
              TGLI+TK+DGTA+GG +I +  T+++ ++ +G+GE I DL  F +K+F+  + GC
Sbjct: 243 VSVTGLIITKLDGTAKGGVVIGLAETYRVKLHAIGIGESIEDLREFTSKEFAKALFGC 300


>gi|89076091|ref|ZP_01162451.1| putative cell division protein FtsY [Photobacterium sp. SKA34]
 gi|89048243|gb|EAR53825.1| putative cell division protein FtsY [Photobacterium sp. SKA34]
          Length = 346

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 194/299 (64%), Gaps = 1/299 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           +S  +  +L +G   T      G   +   +++DD + EELE+ L+ +D+G+    KI+E
Sbjct: 39  KSEGFFARLMRGLKKTKTNFGAGFFGLFRGKKIDDELFEELEEQLLIADVGMDTTLKIIE 98

Query: 69  ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K   K++     LY +  + +  ML  + +P   D S +P+VIL+VGVNGVGKTT 
Sbjct: 99  NLTDKASKKELKDGEALYGLLKDELAGMLAKVEQPLVIDTSKKPYVILMVGVNGVGKTTT 158

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ ++A +
Sbjct: 159 IGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIFDAIE 218

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+AK +DV+I DTAGRL N   LM  + K++RV+K++D  APH ++  +DA TGQNA+ 
Sbjct: 219 SAKAKNIDVVIADTAGRLQNKGNLMEELRKIVRVMKKVDVDAPHEIMLTVDAGTGQNAIS 278

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++F  VA  +G+ +TK+DGTA+GG +  +     IP+ ++G+GEGI+DL PF A++F
Sbjct: 279 QAKLFSDVAPVSGITITKLDGTAKGGVIFAVADQFNIPIRYIGIGEGIDDLRPFAAEEF 337


>gi|290473621|ref|YP_003466493.1| cell division protein: membrane binding (N-terminal); GTPase domain
           (C-terminal) [Xenorhabdus bovienii SS-2004]
 gi|289172926|emb|CBJ79697.1| cell division protein: membrane binding (N-terminal); GTPase domain
           (C-terminal) [Xenorhabdus bovienii SS-2004]
          Length = 465

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 163 FFARLKRSLVKTRQNLGSGFLGLFSGKKIDDDLFEELEEQLLVADVGVETTRKIINNLTA 222

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++     LY  + E +  +L  + KP + +    P+VIL+VGVNGVGKTT IGKL
Sbjct: 223 HASRKELKDAEALYTKLKEEMSDILAKVDKPLDIE-GKSPYVILMVGVNGVGKTTTIGKL 281

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     +    G+D A++ ++A + A+A
Sbjct: 282 ARQYQSQGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADPASVIFDAIQSAKA 341

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VD+LI DTAGRL N S LM  + K++RV+++LD   PH ++  LDA TGQNA+ Q ++
Sbjct: 342 KGVDILIADTAGRLQNKSHLMEELKKIVRVMRKLDEETPHEIMLTLDACTGQNAVSQAKL 401

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 402 FHEAVGLTGISLTKLDGTAKGGVIFAIADQFDIPIRYIGVGEGIEDLRPFKADDF 456


>gi|121533798|ref|ZP_01665625.1| signal recognition particle-docking protein FtsY [Thermosinus
           carboxydivorans Nor1]
 gi|121307789|gb|EAX48704.1| signal recognition particle-docking protein FtsY [Thermosinus
           carboxydivorans Nor1]
          Length = 307

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 133/305 (43%), Positives = 190/305 (62%), Gaps = 9/305 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL  G   T     E I  +I+   ++DD   +ELE +L+ +D+G+     ++++
Sbjct: 3   MGFFDKLKAGLEKTRKNFTEKIEQLITGYTKIDDEFLDELEAVLLSADVGIKTTATLMKD 62

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVVGVNGVGKT 125
           +      +++     L  V  L  ++   LS+   W         P VILVVGVNGVGKT
Sbjct: 63  IRQAIKNREIETPEQLKPV--LQERLCAVLSE--GWTGMRLAPEPPTVILVVGVNGVGKT 118

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL       GLKV+LAAGDTFR+AAIDQL+IW  R  A+ +    GSD AA+A++A
Sbjct: 119 TTIGKLGNYYRQLGLKVLLAAGDTFRAAAIDQLEIWGQRIGAEVIKHSEGSDPAAVAFDA 178

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+K +++IIDTAGRLH  S LM  + K+ RV+ R  P APH  L VLDATTGQNA
Sbjct: 179 VQAAKARKAEIVIIDTAGRLHTKSNLMEELKKIRRVIAREIPDAPHETLLVLDATTGQNA 238

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q ++F    G TG+++TK+DGTA+GG ++ I     +PV ++GVGEG+NDL PF A+D
Sbjct: 239 ISQAKLFSEATGVTGVVLTKLDGTAKGGVVVAIKTELGLPVKWVGVGEGVNDLRPFNAQD 298

Query: 306 FSAVI 310
           F+A +
Sbjct: 299 FAAAL 303


>gi|89068002|ref|ZP_01155419.1| signal recognition particle-docking protein FtsY [Oceanicola
           granulosus HTCC2516]
 gi|89046241|gb|EAR52298.1| signal recognition particle-docking protein FtsY [Oceanicola
           granulosus HTCC2516]
          Length = 384

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 123/275 (44%), Positives = 186/275 (67%), Gaps = 1/275 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E LE+LLI +D+GV  A ++   +    Y K VS + +   ++  + +++ P
Sbjct: 109 RVLDDEMLESLEELLITADLGVETAVRVTANIAEDLYGKRVSTEEIKRALAAEVARIMEP 168

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +++P    +  RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 169 VARPLPL-YPSRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKNVVIAAGDTFRAAAVEQL 227

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W +R     + +  GSD A+LA++A  +AQA   D+L+IDTAGRL N + LM  + K+
Sbjct: 228 QVWGERAGVPVLTAPEGSDPASLAFDALGKAQADGADLLLIDTAGRLQNRADLMEELAKI 287

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+ L VLDATTGQN L QV+ F  +A  +GL+MTK+DGTA+GG L+ +
Sbjct: 288 VRVIRKKDPDAPHNTLLVLDATTGQNGLSQVKTFQQLADVSGLVMTKLDGTAKGGVLVAL 347

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +P++ +GVGE I+DL PF  ++F+  + G 
Sbjct: 348 ADRFGLPIHAIGVGEQIDDLAPFDPQEFADALVGV 382


>gi|54307374|ref|YP_128394.1| putative cell division protein FtsY [Photobacterium profundum SS9]
 gi|46911794|emb|CAG18592.1| putative cell division protein FtsY [Photobacterium profundum SS9]
          Length = 427

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 191/299 (63%), Gaps = 1/299 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           +S  +  +L +G   T      G   + S +++DD + EELE+ L+ + +G+     I+E
Sbjct: 120 QSDGFFARLMRGLKKTKTNFGSGFFGLFSGKKIDDELFEELEEQLLIAXVGMDXTLXIIE 179

Query: 69  ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K    ++     LY +  E +  ML  + +P   D + +P VIL+VGVNGVGKTT 
Sbjct: 180 NLTDKAXRNELKDGEALYGLLKEELADMLSTVEQPLIVDTTQKPFVILMVGVNGVGKTTT 239

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A +
Sbjct: 240 IGKLAKQFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNGVPVVAQHTGADSASVIFDAIE 299

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            AQA+ VDV+I DTAGRL N   LM  + K++RV+K++DP APH ++  +DA TGQNA+ 
Sbjct: 300 SAQARNVDVVIADTAGRLQNKGHLMEELRKIVRVMKKVDPAAPHEIMLTVDAGTGQNAIS 359

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++F  VA  +G+ ++K+DGTA+GG +  I     IP+ ++G+GEGI+DL PFVA +F
Sbjct: 360 QAKLFSEVAPVSGITISKLDGTAKGGVIFAIANQFSIPIRYIGIGEGIDDLRPFVADEF 418


>gi|261344966|ref|ZP_05972610.1| cell division transporter substrate-binding protein FtsY
           [Providencia rustigianii DSM 4541]
 gi|282567109|gb|EFB72644.1| cell division transporter substrate-binding protein FtsY
           [Providencia rustigianii DSM 4541]
          Length = 701

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 128/295 (43%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 399 FFSRLKKGLLKTRQNLGLGFFSLFSGKKIDDDLFEELEEQLLIADVGVDTTRKIINNLTA 458

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++     LY  + E +  +L  + KP   +   +P+VIL+VGVNGVGKTT IGKL
Sbjct: 459 HASRKELKDAEALYGKLREEMSDILATVDKPLVIE-GKKPYVILMVGVNGVGKTTTIGKL 517

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D A++ ++A + AQA
Sbjct: 518 ARQYQSEGKSVMLAAGDTFRAAAVEQLQVWGERNKISVVAQHTGADPASVIFDAIQSAQA 577

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VDVL+ DTAGRL N + LM  + K++RV+++LD  APH ++  LDA+TGQNA+ Q ++
Sbjct: 578 KGVDVLLADTAGRLQNKAHLMEELKKIVRVMRKLDDTAPHEIMLTLDASTGQNAVSQAKL 637

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ ++G+GEGI DL PF A DF
Sbjct: 638 FNDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRPFKADDF 692


>gi|68249364|ref|YP_248476.1| cell division protein FtsY [Haemophilus influenzae 86-028NP]
 gi|68057563|gb|AAX87816.1| cell division protein FtsY [Haemophilus influenzae 86-028NP]
          Length = 414

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KIV+ L  
Sbjct: 110 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIVKNLTE 169

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 170 HASRKELQDAELLYQQLKVEMADILEPVARPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 229

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 230 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 289

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 290 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 349

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 350 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 404


>gi|329896518|ref|ZP_08271576.1| Signal recognition particle receptor protein FtsY [gamma
           proteobacterium IMCC3088]
 gi|328921735|gb|EGG29108.1| Signal recognition particle receptor protein FtsY [gamma
           proteobacterium IMCC3088]
          Length = 375

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 191/301 (63%), Gaps = 3/301 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66
           +E   W  +L +G + T  +L  G+ ++   R+ +D  + E+LE  L+ +D+G+     I
Sbjct: 66  AEKSGWYARLKQGLSRTRGQLSSGLGNLFLGRKVIDADLLEDLESTLLMADVGIEATTHI 125

Query: 67  VEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           VE+L  +   K+++    +L  + + +  M+ P  K      +  P VIL+VGVNG GKT
Sbjct: 126 VEQLTAQVSRKELADGDALLRALKQALTNMVGPYEKALPL-AATAPTVILMVGVNGAGKT 184

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+++    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ ++A
Sbjct: 185 TTIGKLAQRYKAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQHTGADSASVIFDA 244

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + AQA+ VDVLI DTAGRLHN   LM  + K++RV+K+L+P APH V+ VLDAT GQNA
Sbjct: 245 LQAAQARGVDVLIADTAGRLHNKDNLMEELKKVVRVMKKLNPEAPHEVMLVLDATMGQNA 304

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F A    +G+ +TK+DGTA+GG +  I     IP+ ++GVGE + DL PF A+ 
Sbjct: 305 IAQAQHFKAAVDVSGITLTKLDGTAKGGVIFAIAHKLGIPIRYIGVGESLEDLRPFEAEP 364

Query: 306 F 306
           F
Sbjct: 365 F 365


>gi|145634821|ref|ZP_01790529.1| cell division protein [Haemophilus influenzae PittAA]
 gi|145267987|gb|EDK07983.1| cell division protein [Haemophilus influenzae PittAA]
          Length = 410

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 106 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 165

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 166 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 225

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 226 ARKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVSQSTGSDSASVIFDAMQSAAA 285

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 286 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 345

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 346 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 400


>gi|145640856|ref|ZP_01796438.1| cell division protein FtsY [Haemophilus influenzae R3021]
 gi|145274370|gb|EDK14234.1| cell division protein FtsY [Haemophilus influenzae 22.4-21]
          Length = 399

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 96  FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 155

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P++KP   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 156 HASRKELQDAELLYQQLKVEMANILEPVAKPLVIDNTKKPYVILMVGVNGVGKTTTIGKL 215

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 216 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 275

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390


>gi|83955621|ref|ZP_00964201.1| signal recognition particle-docking protein FtsY [Sulfitobacter sp.
           NAS-14.1]
 gi|83839915|gb|EAP79091.1| signal recognition particle-docking protein FtsY [Sulfitobacter sp.
           NAS-14.1]
          Length = 388

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 123/275 (44%), Positives = 189/275 (68%), Gaps = 1/275 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LE+LLI +D+GV  A ++   +   R+ K +SV  +   ++  + +++ P
Sbjct: 112 RVLDDEMLEQLEELLISTDMGVDTALRVTANMAEGRFGKRLSVDEIKRLMATEVARIMDP 171

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++KP    ++  P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 172 IAKPLPI-YAKTPQVVLVVGVNGSGKTTTIGKLASQFKAAGKNVVIAAGDTFRAAAVEQL 230

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD A+LA++A  QA+    D+L+IDTAGRL N   LM  + K+
Sbjct: 231 QVWGDRADVPVLTAGQGSDPASLAFDAMTQAERDGADLLLIDTAGRLQNRGDLMEELAKI 290

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+ L VLDATTGQNAL QV++F  ++  +GL+MTK+DGTA+GG L+ +
Sbjct: 291 VRVIRKKDPSAPHNTLLVLDATTGQNALNQVKVFQEISDVSGLVMTKLDGTAKGGVLVAL 350

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +P++ +GVGE I+DL+PF  ++F+  + G 
Sbjct: 351 ADKFGLPIHAIGVGEQIDDLQPFDPQEFADALMGL 385


>gi|83942798|ref|ZP_00955259.1| signal recognition particle-docking protein FtsY [Sulfitobacter sp.
           EE-36]
 gi|83846891|gb|EAP84767.1| signal recognition particle-docking protein FtsY [Sulfitobacter sp.
           EE-36]
          Length = 398

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 123/275 (44%), Positives = 189/275 (68%), Gaps = 1/275 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LE+LLI +D+GV  A ++   +   R+ K +SV  +   ++  + +++ P
Sbjct: 122 RVLDDEMLEQLEELLISTDMGVDTALRVTANMAEGRFGKRLSVDEIKRLMATEVARIMDP 181

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++KP    ++  P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 182 IAKPLPI-YAKTPQVVLVVGVNGSGKTTTIGKLASQFKAAGKNVVIAAGDTFRAAAVEQL 240

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD A+LA++A  QA+    D+L+IDTAGRL N   LM  + K+
Sbjct: 241 QVWGDRADVPVLTAGQGSDPASLAFDAMTQAERDGADLLLIDTAGRLQNRGDLMEELAKI 300

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ DP APH+ L VLDATTGQNAL QV++F  ++  +GL+MTK+DGTA+GG L+ +
Sbjct: 301 VRVIRKKDPSAPHNTLLVLDATTGQNALNQVKVFQEISDVSGLVMTKLDGTAKGGVLVAL 360

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +P++ +GVGE I+DL+PF  ++F+  + G 
Sbjct: 361 ADKFGLPIHAIGVGEQIDDLQPFDPQEFADALMGL 395


>gi|145636676|ref|ZP_01792343.1| cell division protein FtsY [Haemophilus influenzae PittHH]
 gi|145270202|gb|EDK10138.1| cell division protein FtsY [Haemophilus influenzae PittHH]
          Length = 400

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 96  FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 155

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 156 HASRKELQDAELLYQQLKVEMADILEPVARPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 215

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 216 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 275

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390


>gi|260914701|ref|ZP_05921166.1| FtsY protein [Pasteurella dagmatis ATCC 43325]
 gi|260631205|gb|EEX49391.1| FtsY protein [Pasteurella dagmatis ATCC 43325]
          Length = 476

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 189/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +D+GV    KI+  L  
Sbjct: 173 FFSRLVKGLLKTKQNIGVGFRSFFLGKKIDDELFEELEEQLLVADLGVPTTTKIINNLTQ 232

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +    +LY   ++ + ++L P+++P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 233 HASRKQLQDAELLYQQLKVEMAEILKPVAQPLLIDQSKKPYVILMVGVNGVGKTTTIGKL 292

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K  + G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ ++A + A A
Sbjct: 293 ARKFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAA 352

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 353 RNVDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 412

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL  F A +F
Sbjct: 413 FHEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFKADEF 467


>gi|148826589|ref|YP_001291342.1| cell division protein FtsY [Haemophilus influenzae PittEE]
 gi|148716749|gb|ABQ98959.1| cell division protein FtsY [Haemophilus influenzae PittEE]
          Length = 400

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 96  FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 155

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 156 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 215

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 216 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 275

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390


>gi|330985908|gb|EGH84011.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 502

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 127/305 (41%), Positives = 192/305 (62%), Gaps = 2/305 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV  
Sbjct: 187 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 246

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I++ L  K   K ++  + LY  +   +  ML P+ +P      H+  VILVVGVNG
Sbjct: 247 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKSFVILVVGVNG 306

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 307 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 366

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 367 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 426

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 427 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 486

Query: 302 VAKDF 306
            A+ F
Sbjct: 487 EAEPF 491


>gi|308188478|ref|YP_003932609.1| Cell division protein ftsY [Pantoea vagans C9-1]
 gi|308058988|gb|ADO11160.1| Cell division protein ftsY [Pantoea vagans C9-1]
          Length = 564

 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 124/300 (41%), Positives = 189/300 (63%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   ++I+  L  
Sbjct: 262 FFSRLKRSLVKTRQNLGSGFISLFRGKKIDDDLFDELEEQLLIADVGVDTTRRIITNLTQ 321

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +   K +     LY     +++ ++ K+  PL      D S + P VIL+VGVNGVGKTT
Sbjct: 322 QANRKQLRDAEALYGLLKAEMASILAKVDAPL------DVSGKTPFVILMVGVNGVGKTT 375

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A 
Sbjct: 376 TIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 435

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+++ VDVLI DTAGRL N S LM  + K+ RV+K+LD  APH V+  LDA+TGQNA+
Sbjct: 436 QAAKSRGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDSAPHEVMLTLDASTGQNAV 495

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F+   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF A+DF
Sbjct: 496 SQARLFNEAVGLTGIALTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFKAEDF 555


>gi|145632121|ref|ZP_01787856.1| cell division protein [Haemophilus influenzae 3655]
 gi|144987028|gb|EDJ93558.1| cell division protein [Haemophilus influenzae 3655]
          Length = 405

 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 101 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 160

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 161 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 220

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 221 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 280

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 281 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 340

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 341 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 395


>gi|167622228|ref|YP_001672522.1| signal recognition particle-docking protein FtsY [Shewanella
           halifaxensis HAW-EB4]
 gi|167352250|gb|ABZ74863.1| signal recognition particle-docking protein FtsY [Shewanella
           halifaxensis HAW-EB4]
          Length = 597

 Score =  241 bits (616), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 127/292 (43%), Positives = 190/292 (65%), Gaps = 1/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +G   TS  +  G   + S +++DD + EELE+ L+ +D+GV    ++++ L  +  
Sbjct: 291 RLKRGLKRTSESIGSGFIGLFSGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 350

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LY++  E + K L P+S P   + +  P VIL+VGVNGVGKTT IGKL+K+
Sbjct: 351 RKQLKDGEALYELLREEMQKTLEPVSVPLVPENADGPFVILMVGVNGVGKTTTIGKLAKQ 410

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A+KV
Sbjct: 411 YQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVLFDALQAARARKV 470

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N + LM  + K++RV+K+ D  APH V+  LDA+TGQNA+ Q ++F  
Sbjct: 471 DVLIADTAGRLQNKAHLMDELKKVVRVMKKQDETAPHEVMLTLDASTGQNAISQAQLFQE 530

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  F AKDF
Sbjct: 531 AVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDF 582


>gi|119503518|ref|ZP_01625601.1| signal recognition particle-docking protein FtsY [marine gamma
           proteobacterium HTCC2080]
 gi|119460580|gb|EAW41672.1| signal recognition particle-docking protein FtsY [marine gamma
           proteobacterium HTCC2080]
          Length = 339

 Score =  241 bits (616), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 122/293 (41%), Positives = 186/293 (63%), Gaps = 3/293 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +  +G + T  +   GI  +   R+ +D+ V E LED L+ +D+G+   Q+IV ++  + 
Sbjct: 40  RFRRGLSRTGGQFSNGIGALFLGRKVIDENVLEALEDQLLTADVGIEATQRIVSDITERI 99

Query: 75  YAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             K++S    + + ++  +  +L P  +P   D  ++P VILVVGVNG GKTT IGKL+ 
Sbjct: 100 SRKELSDGAAVMEATKSALLDILTPCEQPLAPD-DNKPFVILVVGVNGAGKTTTIGKLAH 158

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +    G +VMLAAGDTFR+AA++QL+ W +R     +    G+D+A++ ++A + A+A+ 
Sbjct: 159 RFKAEGKQVMLAAGDTFRAAAVEQLQAWGERNEVPVIAQHTGADSASVLFDAVQAAKARG 218

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           VD+LI DTAGRL N S LM  + K++RV++++DP APH  L VLDA TGQNA+ Q E F 
Sbjct: 219 VDILIADTAGRLQNKSHLMDELEKVVRVMRKVDPQAPHETLLVLDAGTGQNAVSQAEEFD 278

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              G TG+ ++K+DGTARGG +  I      P+ F+G+GE + DL+PF A  F
Sbjct: 279 RTVGVTGIALSKLDGTARGGVIFAIAQRLARPIRFVGIGEAVTDLQPFDANAF 331


>gi|254486217|ref|ZP_05099422.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           GAI101]
 gi|214043086|gb|EEB83724.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           GAI101]
          Length = 399

 Score =  241 bits (616), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 125/274 (45%), Positives = 188/274 (68%), Gaps = 1/274 (0%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R LDD + E+LE+LLI +D+GV  A ++   +   R+ K +SV  +   ++  I +++ P
Sbjct: 123 RVLDDEMLEQLEELLISTDMGVDTALRVTANMAEGRFGKRLSVDEIKRLLAAEIARIMDP 182

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++KP    +S  P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL
Sbjct: 183 IAKPLPL-YSKTPQVVLVVGVNGSGKTTTIGKLASQFKAAGKHVVIAAGDTFRAAAVEQL 241

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W DR     + +  GSD A+LA+EA  QA+    D+L+IDTAGRL N   LM  + K+
Sbjct: 242 QVWGDRAGVPVLTAAQGSDPASLAFEAMGQAERDGADLLLIDTAGRLQNRGDLMEELAKI 301

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV+++ D  APH+ L VLDATTGQNAL QV++F  ++  +GL+MTK+DGTA+GG L+ +
Sbjct: 302 VRVIRKKDATAPHNTLLVLDATTGQNALNQVKVFQEISDVSGLVMTKLDGTAKGGVLVAL 361

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                +P++ +GVGE I+DL+PF  ++F+  + G
Sbjct: 362 ADKFGLPIHAIGVGEQIDDLQPFDPQEFADALMG 395


>gi|145638433|ref|ZP_01794043.1| cell division protein [Haemophilus influenzae PittII]
 gi|145272762|gb|EDK12669.1| cell division protein [Haemophilus influenzae PittII]
          Length = 420

 Score =  241 bits (616), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 116 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 175

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 176 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 235

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 236 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 295

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 296 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 355

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 356 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 410


>gi|309751571|gb|ADO81555.1| Signal recognition particle receptor FtsY [Haemophilus influenzae
           R2866]
          Length = 435

 Score =  241 bits (616), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 131 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 190

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 191 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 250

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 251 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 310

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 311 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 370

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 371 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 425


>gi|88606999|ref|YP_505757.1| signal recognition particle-docking protein FtsY [Anaplasma
           phagocytophilum HZ]
 gi|88598062|gb|ABD43532.1| signal recognition particle-docking protein FtsY [Anaplasma
           phagocytophilum HZ]
          Length = 305

 Score =  241 bits (616), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 127/301 (42%), Positives = 188/301 (62%), Gaps = 4/301 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66
           S + S+ + L +G + TS +L EGI +I   +  +D    + L DLLI +D+G  VA   
Sbjct: 2   SSNESFWQSLKRGLSKTSARLSEGIRNIFGGKADVDQSTLKALRDLLISTDMGPDVADFF 61

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +++ T ++   V+ +  L   SE I   L P S P     +H PH+IL+ GVNG GKTT
Sbjct: 62  TQKISTLKFTDSVAEEVRLKLASE-IENFLQPRSAPIT--ITHTPHIILLCGVNGSGKTT 118

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            + KL+ K     + V++ A DTFR+AA++QL +WA+R S   V   IG+DAA++AY+  
Sbjct: 119 TVAKLAHKFMKKNMSVIIGACDTFRAAAVEQLNVWAERISCPIVTGTIGADAASVAYKTV 178

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A  +  DV+IIDTAGRLHN+  LM  + K+ RV++R D  APH ++ VLDAT GQN  
Sbjct: 179 ERAVKEPFDVVIIDTAGRLHNHKNLMEELAKICRVIRRHDEKAPHDIILVLDATIGQNTF 238

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVEMF +     GLI+TK+DGTA+GG ++ +   + + ++ +G GEGI DLE F A +F
Sbjct: 239 TQVEMFSSFVDVGGLILTKLDGTAKGGVVLRVSQKYNLMIHAIGTGEGIEDLEDFSATNF 298

Query: 307 S 307
           +
Sbjct: 299 A 299


>gi|260581582|ref|ZP_05849379.1| signal recognition particle-docking protein FtsY [Haemophilus
           influenzae NT127]
 gi|260095175|gb|EEW79066.1| signal recognition particle-docking protein FtsY [Haemophilus
           influenzae NT127]
          Length = 414

 Score =  241 bits (616), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 110 FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 169

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 170 HASRKELQDAELLYQQLKVEMADILEPVAQPLKIDSTKKPYVILMVGVNGVGKTTTIGKL 229

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 230 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 289

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 290 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 349

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 350 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 404


>gi|157963791|ref|YP_001503825.1| signal recognition particle-docking protein FtsY [Shewanella
           pealeana ATCC 700345]
 gi|157848791|gb|ABV89290.1| signal recognition particle-docking protein FtsY [Shewanella
           pealeana ATCC 700345]
          Length = 643

 Score =  241 bits (616), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 127/292 (43%), Positives = 189/292 (64%), Gaps = 1/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +G   TS  +  G   + S +++DD + EELE+ L+ +D+GV    ++++ L  +  
Sbjct: 337 RLKRGLKRTSESIGSGFIGLFSGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 396

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LYD+  E + K L P+S P   + +  P VIL+VGVNGVGKTT IGKL+K+
Sbjct: 397 RKQLKDGEALYDLLREEMQKTLDPVSVPLIPENADGPFVILMVGVNGVGKTTTIGKLAKQ 456

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             + G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + A+A+ V
Sbjct: 457 YQEQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVLFDALQAARARNV 516

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N + LM  + K++RV+K+ D  APH V+  LDA+TGQNA+ Q ++F  
Sbjct: 517 DVLIADTAGRLQNKAHLMDELKKVVRVMKKQDEAAPHEVMLTLDASTGQNAISQAQLFQE 576

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  F AKDF
Sbjct: 577 AVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDF 628


>gi|52424195|ref|YP_087332.1| FtsY protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306247|gb|AAU36747.1| FtsY protein [Mannheimia succiniciproducens MBEL55E]
          Length = 468

 Score =  241 bits (616), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 189/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G   + + +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 164 FFSRLVKGLLKTKQNIGAGFLSLFTGKKIDDELFEELEEQLLIADIGVPTTAKIIKNLTE 223

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                 +   + LY   ++ + ++L P+ +P   D   +P+VIL+VGVNGVGKTT IGKL
Sbjct: 224 HASRAQLKDTQALYQQLKVEMAEILKPVEQPLIVDTGRKPYVILMVGVNGVGKTTTIGKL 283

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ ++A + A A
Sbjct: 284 ARQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAA 343

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 344 RNADILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKL 403

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL PF A++F
Sbjct: 404 FHEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLRPFHAEEF 458


>gi|309973736|gb|ADO96937.1| Signal recognition particle receptor FtsY [Haemophilus influenzae
           R2846]
          Length = 400

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 96  FFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 155

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P++KP   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 156 HASRKELQDAELLYQQLKVEMANILEPVAKPLVIDNTKKPYVILMVGVNGVGKTTTIGKL 215

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 216 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 275

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390


>gi|254362682|ref|ZP_04978769.1| cell division protein FtsY [Mannheimia haemolytica PHL213]
 gi|261493203|ref|ZP_05989730.1| cell division protein FtsY [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496553|ref|ZP_05992933.1| cell division protein FtsY [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153094301|gb|EDN75165.1| cell division protein FtsY [Mannheimia haemolytica PHL213]
 gi|261307756|gb|EEY09079.1| cell division protein FtsY [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311053|gb|EEY12229.1| cell division protein FtsY [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 498

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 128/299 (42%), Positives = 195/299 (65%), Gaps = 10/299 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           +  +L +G   T   +  G  +    +++DD + EELE+ L+ +D+G+   QKI+  L  
Sbjct: 192 FFSRLIQGLIKTKQNIGSGFRNFFRGKKIDDELFEELEEQLLVADLGMPTTQKIINNLTQ 251

Query: 72  --TKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             TK+  KD  +  Q++  ++ E+    L P+++P   + + +P+VIL+VGVNGVGKTT 
Sbjct: 252 HATKQQLKDADLLYQQLKVELGEV----LKPVAQPLVLE-AKKPYVILMVGVNGVGKTTT 306

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ ++A +
Sbjct: 307 IGKLARKFQQEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQ 366

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A AK +DVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ 
Sbjct: 367 SAAAKGIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAIS 426

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF A++F
Sbjct: 427 QAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEF 485


>gi|294138984|ref|YP_003554962.1| cell division protein FtsY [Shewanella violacea DSS12]
 gi|293325453|dbj|BAJ00184.1| cell division protein FtsY [Shewanella violacea DSS12]
          Length = 743

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/295 (43%), Positives = 189/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+G+    ++++ L  
Sbjct: 436 FFARLKRGLKRTSENIGSGFVGLFKGKKIDDDLFEELEEQLLIADVGIETTTRLIDSLTE 495

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K +     LY++  E + K L P+S P   D +  P VIL+VGVNGVGKTT IGKL
Sbjct: 496 QASRKQLKDGEALYELLREEMQKTLDPVSIPLVPDNADGPFVILMVGVNGVGKTTTIGKL 555

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + A+A
Sbjct: 556 AKQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVVFDALQAARA 615

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +KVDVLI DTAGRL N + LM  + K++RV+K+LD +APH V+  LDA TGQNA+ Q E 
Sbjct: 616 RKVDVLIADTAGRLQNKAHLMDELKKIVRVMKKLDENAPHEVMLTLDAGTGQNAISQAEF 675

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F    G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  F AKDF
Sbjct: 676 FKKDVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDF 730


>gi|90407352|ref|ZP_01215537.1| Signal recognition particle GTPase [Psychromonas sp. CNPT3]
 gi|90311503|gb|EAS39603.1| Signal recognition particle GTPase [Psychromonas sp. CNPT3]
          Length = 507

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 192/299 (64%), Gaps = 1/299 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           + L +  +  +    + L +  G+  I   +++D+ + EELE+ LI +D+GV    KI+E
Sbjct: 191 DKLGFFARFRQSLTKSRLTIGSGLFSIFKGKQIDEDLFEELEEQLIIADMGVETTLKIIE 250

Query: 69  ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L      K +     LY +  E + ++L  + KP   D S  P+VIL+VGVNGVGKTT 
Sbjct: 251 NLTQHANRKQLKDAEALYSLLKEDLSEILATVEKPLVIDKSKSPYVILMVGVNGVGKTTT 310

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+KK    GL VMLAAGDTFR+AA++QL++W DR +   +  + G+D+A++ ++A  
Sbjct: 311 IGKLAKKYQQQGLSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQQTGADSASVLFDAMD 370

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ VDVLI DTAGRL N   LM  + K++R++++ D  APH ++  +DA TGQNA+ 
Sbjct: 371 AARARGVDVLIADTAGRLQNKDHLMDELSKVVRIMRKKDASAPHEIMLTIDAGTGQNAIS 430

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           QV +F+   G TG+ +TK+DGTA+GG +  +    K+P+ ++G GEGI+DL  F A++F
Sbjct: 431 QVNLFNKAVGLTGITLTKLDGTAKGGIIFSLADKFKLPIRYIGTGEGIDDLREFNAQEF 489


>gi|319775293|ref|YP_004137781.1| cell division protein FtsY [Haemophilus influenzae F3047]
 gi|317449884|emb|CBY86095.1| cell division protein FtsY [Haemophilus influenzae F3047]
          Length = 414

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 110 FFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 169

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P++KP   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 170 HASRKELQDAELLYQQLKVEMANILEPVAKPLVIDNTKKPYVILMVGVNGVGKTTTIGKL 229

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 230 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 289

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 290 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 349

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 350 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 404


>gi|58698555|ref|ZP_00373456.1| signal recognition particle-docking protein FtsY [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630589|ref|YP_002727380.1| signal recognition particle docking protein FtsY [Wolbachia sp.
           wRi]
 gi|58534937|gb|EAL59035.1| signal recognition particle-docking protein FtsY [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225592570|gb|ACN95589.1| signal recognition particle docking protein FtsY [Wolbachia sp.
           wRi]
          Length = 303

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/304 (43%), Positives = 191/304 (62%), Gaps = 3/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S    L KG   TS +  +G+  I S  ++LD  + +ELE+LLI  DIG   ++ I++ 
Sbjct: 1   MSLFGNLYKGLLKTSSRFSDGVKSIFSGKKKLDQSLLDELEELLISMDIGHKTSKLIIDR 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + ++ K+V    +   +   I  +L P+ +P     + +PH+I+V GVNG GKTT IG
Sbjct: 61  LTSIKFDKEVEYNIITQQLVNEIEAILNPVVQPL--ILNKKPHIIMVCGVNGNGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K  +    VML A DTFR+AA +QL IWA+R+    V  E GSD+A++AY A  QA
Sbjct: 119 KLAYKYKEMRKSVMLVACDTFRAAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
               VDV++IDTAGRL NN  LM  + K+ R +K+LD  APH V+ VLDATTGQNA  Q+
Sbjct: 179 IKDNVDVVLIDTAGRLQNNVNLMEELSKIYRTIKKLDGTAPHDVILVLDATTGQNAYSQL 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F  +   TGLI+TK+DGTA+GG +I +   +KI ++ +G+GE I DL  F +K+F+  
Sbjct: 239 EAFSKMVNVTGLIVTKLDGTAKGGVVIGLAEAYKIKLHAIGIGENIEDLREFTSKEFAEA 298

Query: 310 ITGC 313
           +  C
Sbjct: 299 LFNC 302


>gi|319897733|ref|YP_004135930.1| cell division protein ftsy [Haemophilus influenzae F3031]
 gi|329122778|ref|ZP_08251350.1| cell division protein FtsY [Haemophilus aegyptius ATCC 11116]
 gi|317433239|emb|CBY81614.1| cell division protein FtsY [Haemophilus influenzae F3031]
 gi|327472042|gb|EGF17480.1| cell division protein FtsY [Haemophilus aegyptius ATCC 11116]
          Length = 414

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 110 FFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 169

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 170 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 229

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 230 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 289

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 290 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 349

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 350 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 404


>gi|16272709|ref|NP_438927.1| cell division protein FtsY [Haemophilus influenzae Rd KW20]
 gi|260579859|ref|ZP_05847689.1| signal recognition particle-docking protein FtsY [Haemophilus
           influenzae RdAW]
 gi|1169764|sp|P44870|FTSY_HAEIN RecName: Full=Cell division protein ftsY homolog
 gi|1573776|gb|AAC22426.1| cell division protein (ftsY) [Haemophilus influenzae Rd KW20]
 gi|260093143|gb|EEW77076.1| signal recognition particle-docking protein FtsY [Haemophilus
           influenzae RdAW]
          Length = 414

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 110 FFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 169

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 170 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 229

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 230 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 289

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 290 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 349

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 350 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 404


>gi|83643465|ref|YP_431900.1| signal recognition particle-docking protein FtsY [Hahella
           chejuensis KCTC 2396]
 gi|83631508|gb|ABC27475.1| signal recognition particle-docking protein FtsY [Hahella
           chejuensis KCTC 2396]
          Length = 376

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 126/296 (42%), Positives = 192/296 (64%), Gaps = 3/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           W+ ++  G + T  +  + +  + + S+ +D+ + EE+E LL+ +D+G+    +I + + 
Sbjct: 75  WLTRVRSGLSKTRGQFSQNLMALFAGSKAIDEELLEEIETLLLSADVGIEATTQITQAIT 134

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K     +     LYD + E +  +L P   P   + +  P+VILVVGVNGVGKTT IGK
Sbjct: 135 EKLDRNQLKDSSALYDALKEELRGLLEPCCSPLQIE-NKTPYVILVVGVNGVGKTTTIGK 193

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G  V+LAAGDTFR+AA++QL++W +R +   +    G+D+A++ ++A + A+
Sbjct: 194 LANKFQQEGRSVVLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIFDAVQAAK 253

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++ VDV+I DTAGRL N   LMA + K++RV+K+ DP APH VL VLDA TGQNAL Q +
Sbjct: 254 SRGVDVVIADTAGRLQNKENLMAELEKVVRVIKKHDPDAPHEVLLVLDAGTGQNALSQAQ 313

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F    G TG+ +TK+DGTA+GG L  I   H +P+ ++GVGEGI+DL PF A +F
Sbjct: 314 LFRQAVGVTGIAITKLDGTAKGGILFAIAKQHGLPIRYIGVGEGIDDLRPFDASEF 369


>gi|229845814|ref|ZP_04465926.1| cell division protein FtsY [Haemophilus influenzae 7P49H1]
 gi|229810818|gb|EEP46535.1| cell division protein FtsY [Haemophilus influenzae 7P49H1]
          Length = 400

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 96  FFSRLVKGLLKTKQNVGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 155

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 156 HASRKELQDAELLYQQLKVEMVDILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 215

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 216 ARKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVSQSTGSDSASVIFDAMQSAAA 275

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390


>gi|301169485|emb|CBW29086.1| cell division protein FtsY [Haemophilus influenzae 10810]
          Length = 414

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 110 FFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 169

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 170 HASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 229

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 230 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 289

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 290 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 349

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 350 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 404


>gi|239946696|ref|ZP_04698449.1| signal recognition particle-docking protein FtsY [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239920972|gb|EER20996.1| signal recognition particle-docking protein FtsY [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 303

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/303 (44%), Positives = 194/303 (64%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD    EELE+LLI SD+ V+V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVSVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   ++EL+ + L     PF  D +++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKDALAELVEQQLSKSEIPFTLD-ANKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AA++QL  W DR +A  +  E  +D A++AY A +++ 
Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWVDRANALLITGEESADPASVAYRAMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HS+L V+DA TGQN   QV
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSIL-VIDAITGQNTYNQV 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TGLI+TK+DG+A+ G L+ +V    +PVYF+G+GE I DL+ F   DF+  
Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVLVGVVQKFNLPVYFIGIGEKIEDLKKFNRHDFAKS 299

Query: 310 ITG 312
           + G
Sbjct: 300 LVG 302


>gi|87121171|ref|ZP_01077062.1| cell division protein FtsY [Marinomonas sp. MED121]
 gi|86163663|gb|EAQ64937.1| cell division protein FtsY [Marinomonas sp. MED121]
          Length = 439

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/308 (43%), Positives = 198/308 (64%), Gaps = 9/308 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           A   L+W +++  G + T   L  G+ + I+ S+++DD + EELE  L+ +D+GV   Q 
Sbjct: 125 ADSGLTWAQRVKAGLSRTRNGLGSGLANLIVGSKQIDDDLLEELETQLLMADVGVEATQS 184

Query: 66  IVEELLTKRYAKDVSVQRVL-----YDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVG 118
           ++  L  K   K++     L     +++S+++     PL  S+P   +    P+VIL+VG
Sbjct: 185 LIATLTEKMNRKELKDADALMAALKHELSQMLASSAKPLTLSEP-EVEGKKTPYVILMVG 243

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+KK    G KVMLAAGDTFR+AA++QL++W +R     V  + GSD+
Sbjct: 244 VNGVGKTTTIGKLTKKFQAEGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVVAQQTGSDS 303

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ ++A   A+AK  DV+I DTAGRL N S LM  + K++RV+K+LD +APH V+ VLD
Sbjct: 304 ASVIFDAIDSARAKGFDVVIADTAGRLQNKSNLMNELSKVVRVMKKLDDNAPHEVMLVLD 363

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQNA+ Q ++F    G +G+ +TK+DGTA+GG +  I    +IP+ F+GVGE ++DL
Sbjct: 364 AGTGQNAISQAKLFSEAVGVSGITLTKLDGTAKGGIIFAIAKEFEIPIRFIGVGEQVDDL 423

Query: 299 EPFVAKDF 306
             F A  F
Sbjct: 424 RAFDADVF 431


>gi|315178771|gb|ADT85685.1| signal recognition particle GTPase [Vibrio furnissii NCTC 11218]
          Length = 403

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 196/304 (64%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 91  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 150

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K   + +     LY V  + + ++L  + +P   D S  P VIL+VGVNGV
Sbjct: 151 LKIIASLTEKSSRQQLRDGEALYGVLKDEMAEILSTVEQPLVIDSSKTPFVILMVGVNGV 210

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL+IW +R +   +    G+D+A++ 
Sbjct: 211 GKTTTIGKLAKQFQAEGKKVMLAAGDTFRAAAVEQLQIWGERNNVPVIAQHTGADSASVI 270

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 271 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 330

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PF 
Sbjct: 331 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEGIDDLRPFA 390

Query: 303 AKDF 306
            ++F
Sbjct: 391 TQEF 394


>gi|312884400|ref|ZP_07744105.1| cell division protein FtxY [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367922|gb|EFP95469.1| cell division protein FtxY [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 397

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/296 (41%), Positives = 194/296 (65%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  A T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 93  SFFARLKRSLAKTKTNIGAGFFGLFKGKQIDDDLFEELEEQLLIADVGMDTTMKIIGSLT 152

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   +D+     LY +  + + +ML  + +P   +   +P VIL+VGVNGVGKTT IGK
Sbjct: 153 EKASRRDLKDGEALYGLLKDEMTEMLSTVEQPLVVNNEAKPFVILMVGVNGVGKTTTIGK 212

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 213 LAKQFQAEGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIESAK 272

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK VDV+I DTAGRL N + LM  + K++RV++++D  APH ++  LDA TGQNA+ Q +
Sbjct: 273 AKGVDVVIADTAGRLQNKANLMEELKKIVRVMQKVDSTAPHEIMLTLDAGTGQNAISQAK 332

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PF +++F
Sbjct: 333 LFSEVAPLTGIALTKLDGTAKGGVIFSLADQFQIPIRYIGVGEGIDDLRPFESQEF 388


>gi|213967799|ref|ZP_03395946.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tomato T1]
 gi|301382436|ref|ZP_07230854.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061172|ref|ZP_07252713.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tomato K40]
 gi|302132035|ref|ZP_07258025.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213927575|gb|EEB61123.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tomato T1]
          Length = 513

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/298 (42%), Positives = 189/298 (63%), Gaps = 2/298 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV     I++ 
Sbjct: 205 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 264

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K ++  + LY  +   +  ML  + +P      H+P VILVVGVNG GKTT I
Sbjct: 265 LTQKVARKQLTDAQALYTSLQGELAAMLKLVEQPLVIKAEHKPFVILVVGVNGAGKTTTI 324

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + 
Sbjct: 325 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 384

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q
Sbjct: 385 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 444

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F
Sbjct: 445 AKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 502


>gi|88797601|ref|ZP_01113190.1| signal recognition particle receptor FtsY [Reinekea sp. MED297]
 gi|88779773|gb|EAR10959.1| signal recognition particle receptor FtsY [Reinekea sp. MED297]
          Length = 330

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/310 (43%), Positives = 200/310 (64%), Gaps = 5/310 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           SW +++  G + T      G+ T ++  + LDD   EELE LL+ SD+G+   Q I+++L
Sbjct: 24  SWFQRVKNGLSKTRSGFSNGLATALLGRKTLDDDTLEELETLLLSSDVGIEATQTILDDL 83

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           + +   K+++    L + + E + + L P+ +P   D   +P VILVVGVNGVGKTT IG
Sbjct: 84  VERTSRKELNDNNALMNALRETLVEQLTPVEQPLQIDTGKQPFVILVVGVNGVGKTTTIG 143

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++++    G  VMLAAGDTFR+AA++QL+ W +R +   +    G+D+A++ ++A + A
Sbjct: 144 KMTQRFQSEGKSVMLAAGDTFRAAAVEQLQTWGERHNVPVIAQHTGADSASVIFDAVQAA 203

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +++ VDVLI DTAGRLHN   LMA + K++RV+K++D  APH VL VLDA TGQNA+ Q 
Sbjct: 204 KSRGVDVLIADTAGRLHNKDNLMAELEKVLRVMKKIDDSAPHEVLLVLDAGTGQNAVAQA 263

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F   A  TG+ +TK+DGTARGG +  +     IPV F+GVGE   DL+ F A++F   
Sbjct: 264 ESFTKAAPLTGIALTKLDGTARGGIIFALARKFGIPVRFIGVGEQAEDLDRFSAQEF--- 320

Query: 310 ITGCLDYGEE 319
           ++  LD  +E
Sbjct: 321 VSALLDSDDE 330


>gi|242241271|ref|YP_002989452.1| signal recognition particle-docking protein FtsY [Dickeya dadantii
           Ech703]
 gi|242133328|gb|ACS87630.1| signal recognition particle-docking protein FtsY [Dickeya dadantii
           Ech703]
          Length = 432

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/297 (42%), Positives = 186/297 (62%), Gaps = 6/297 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   +KI+E L  
Sbjct: 130 FFARLKRSLVKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGVETTRKIIERLTE 189

Query: 73  ---KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              ++  KD     +L  +   +  +L    +P   +    P VIL+VGVNGVGKTT IG
Sbjct: 190 HADRKQLKDADA--LLSLLKTEMSGILAKADEPLVIE-GKTPFVILMVGVNGVGKTTTIG 246

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + A
Sbjct: 247 KLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSASVIFDAIQAA 306

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q 
Sbjct: 307 KARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDDDAPHEVMLTLDASTGQNAVSQA 366

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            +F    G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI+DL PF A DF
Sbjct: 367 RLFDEAVGLTGIALTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIDDLRPFKADDF 423


>gi|260767577|ref|ZP_05876513.1| signal recognition particle receptor protein FtsY [Vibrio furnissii
           CIP 102972]
 gi|260617477|gb|EEX42660.1| signal recognition particle receptor protein FtsY [Vibrio furnissii
           CIP 102972]
          Length = 405

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 196/304 (64%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 93  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 152

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K   + +     LY V  + + ++L  + +P   D S  P VIL+VGVNGV
Sbjct: 153 LKIIASLTEKSSRQQLRDGEALYGVLKDEMAEILSTVEQPLVIDSSKTPFVILMVGVNGV 212

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL+IW +R +   +    G+D+A++ 
Sbjct: 213 GKTTTIGKLAKQFQAEGKKVMLAAGDTFRAAAVEQLQIWGERNNVPVIAQHTGADSASVI 272

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 273 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 332

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PF 
Sbjct: 333 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEGIDDLRPFA 392

Query: 303 AKDF 306
            ++F
Sbjct: 393 TQEF 396


>gi|229844636|ref|ZP_04464775.1| cell division protein FtsY [Haemophilus influenzae 6P18H1]
 gi|229812350|gb|EEP48040.1| cell division protein FtsY [Haemophilus influenzae 6P18H1]
          Length = 400

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 189/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 96  FFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 155

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P++KP   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 156 HASRKELQDAELLYQQLKVEMANILEPVAKPLVIDNTKKPYVILMVGVNGVGKTTTIGKL 215

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 216 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 275

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K+ RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIARVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390


>gi|226946816|ref|YP_002801889.1| signal recognition particle-docking protein FtsY [Azotobacter
           vinelandii DJ]
 gi|226721743|gb|ACO80914.1| signal recognition particle-docking protein FtsY [Azotobacter
           vinelandii DJ]
          Length = 451

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/296 (43%), Positives = 191/296 (64%), Gaps = 2/296 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G A T   L EG+  + +  + +DD + EELE  L+ +D+GV     I++ L 
Sbjct: 145 FFARLRQGLAKTGSTLGEGMASLFLGEKAIDDELLEELETRLLLADVGVEATTAIIQSLT 204

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   K+++    LY  + E +  +L P+ +P   +   RP+VILVVGVNGVGKTT IGK
Sbjct: 205 QRVARKELADSEALYRALQEELAALLRPVEQPLVLESEQRPYVILVVGVNGVGKTTTIGK 264

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++   G KVMLAAGDTFR+AA++QL+IW +R     +    G+D+A++ ++A + A+
Sbjct: 265 LAARLQQEGRKVMLAAGDTFRAAAVEQLQIWGERNRIPVIAQHTGADSASVIFDALQAAK 324

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DVLI DTAGRLH    LM  + K+ RVL +LD  APH VL VLDA TGQNA+ Q +
Sbjct: 325 ARGMDVLIADTAGRLHTKDNLMEELKKVRRVLGKLDEAAPHEVLLVLDAGTGQNAINQTK 384

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEG++DL  F A++F
Sbjct: 385 QFNQAVEITGLALTKLDGTAKGGVIFALARQFGLPIRYIGVGEGVDDLRDFAAEEF 440


>gi|229520064|ref|ZP_04409492.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           TM 11079-80]
 gi|229342852|gb|EEO07842.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           TM 11079-80]
          Length = 395

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 91  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 150

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 151 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLLIDTEKKPYVILMVGVNGVGKTTTIGK 210

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 211 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 270

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 271 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 330

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 331 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGENIDDLRPFATQEF 386


>gi|212637491|ref|YP_002314016.1| cell division transporter substrate-binding protein FtsY
           [Shewanella piezotolerans WP3]
 gi|212558975|gb|ACJ31429.1| Cell division transporter substrate-binding protein FtsY
           [Shewanella piezotolerans WP3]
          Length = 528

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 131/307 (42%), Positives = 194/307 (63%), Gaps = 2/307 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +G   TS  +  G   I S +++DD + EELE+ L+ +D+GV    ++++ L  +  
Sbjct: 222 RLKRGLKRTSESIGSGFVGIFSGKKIDDDLFEELEEQLLIADVGVETTTRLIKNLTEQAS 281

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LYD+  + + K L P+S P   + +  P VIL+VGVNGVGKTT IGKL+K+
Sbjct: 282 RKQLKDGEALYDLMRDEMQKTLDPVSVPLIPENADGPFVILMVGVNGVGKTTTIGKLAKQ 341

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + A+A+K 
Sbjct: 342 YQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVLFDALQAAKARKA 401

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N + LM  + K++RV+K+ D  APH V+  LDA+TGQNA+ Q ++F  
Sbjct: 402 DVLIADTAGRLQNKAHLMDELKKVVRVMKKQDESAPHEVMLTLDASTGQNAISQAQLFQE 461

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-SAVITGC 313
             G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  F AKDF  A+ +  
Sbjct: 462 AVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDFIEALFSQS 521

Query: 314 LDYGEEK 320
            D  E K
Sbjct: 522 KDDTETK 528


>gi|330812382|ref|YP_004356844.1| signal recognition particle receptor [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380490|gb|AEA71840.1| putative signal recognition particle receptor [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 477

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/298 (41%), Positives = 189/298 (63%), Gaps = 2/298 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + TS  + EG+  +   ++ +DD + E++E  L+ +D+GV     I++ 
Sbjct: 169 VGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDELLEDIETRLLTADVGVEATSVIIQS 228

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K ++    LY  +   +  +L P+ KP      ++P VILVVGVNG GKTT I
Sbjct: 229 LTQKVARKQLTDADALYKSLQGELTSLLKPVEKPLVIASQNKPFVILVVGVNGAGKTTTI 288

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + 
Sbjct: 289 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVIFDAVQA 348

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q
Sbjct: 349 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 408

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F
Sbjct: 409 AKQFNQTVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 466


>gi|170718906|ref|YP_001784077.1| signal recognition particle-docking protein FtsY [Haemophilus
           somnus 2336]
 gi|168827035|gb|ACA32406.1| signal recognition particle-docking protein FtsY [Haemophilus
           somnus 2336]
          Length = 447

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 188/295 (63%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G   +   +++DD + EELE+ L+ +DIGV    KI+  L+ 
Sbjct: 144 FFSRLVKGLLKTKQNIGIGFRSLFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLIQ 203

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +    +LY   ++ +  +L P+ +P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 204 HASRKQLQEADLLYQQLKVELADILKPVEQPLQLDNSKKPYVILMVGVNGVGKTTTIGKL 263

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G  VMLAAGDTFR+AA++QL++W +R     +    GSD+A++ ++A + A A
Sbjct: 264 ANQFQRQGKSVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQSTGSDSASVIFDAMQSAAA 323

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LD+ TGQNA+ Q ++
Sbjct: 324 RNIDVLIADTAGRLQNKNNLMDELKKIVRVIKKCDETAPHEIMLTLDSGTGQNAISQAKL 383

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I+DL PF A +F
Sbjct: 384 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIDDLRPFQADEF 438


>gi|218681649|ref|ZP_03529450.1| cell division protein [Rhizobium etli CIAT 894]
          Length = 423

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/203 (56%), Positives = 157/203 (77%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW ++L  G A TS +L   I  + + R+LDD   ++LEDLLI++D+GV  A ++ + L
Sbjct: 221 LSWFQRLRNGLARTSSQLTGQIAALFTKRKLDDETLQDLEDLLIQADLGVETALRVTDTL 280

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++RY KDV+ + V   ++  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGK
Sbjct: 281 ASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKTTTIGK 340

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++F+ +++G+DAA LAY+AF+QA+
Sbjct: 341 LAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFIGTKLGADAAGLAYDAFEQAK 400

Query: 191 AKKVDVLIIDTAGRLHNNSILMA 213
           A+K DVLI+DTAGRL N + LMA
Sbjct: 401 ARKCDVLIVDTAGRLQNKAELMA 423


>gi|251791621|ref|YP_003006342.1| signal recognition particle-docking protein FtsY [Dickeya zeae
           Ech1591]
 gi|247540242|gb|ACT08863.1| signal recognition particle-docking protein FtsY [Dickeya zeae
           Ech1591]
          Length = 452

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 190/299 (63%), Gaps = 10/299 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   +KI++ L  
Sbjct: 150 FFARLKRSLIKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGVETTRKIIDRLTE 209

Query: 72  --TKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             +++  KD      L   ++S+++ K+  PL+          P VIL+VGVNGVGKTT 
Sbjct: 210 HASRKQLKDAEALIALLKAEMSDILAKVDAPLAID-----GKTPFVILMVGVNGVGKTTT 264

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A +
Sbjct: 265 IGKLARQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSASVIFDALQ 324

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ 
Sbjct: 325 AAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEEAPHEVMLTLDASTGQNAVS 384

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++F+   G  G+ +TK+DGTA+GG +  I     IP+ ++GVGE I+DL PF A DF
Sbjct: 385 QAKLFNEAVGLNGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGESIDDLRPFKADDF 443


>gi|269961511|ref|ZP_06175874.1| signal recognition particle-docking protein FtsY [Vibrio harveyi
           1DA3]
 gi|269833740|gb|EEZ87836.1| signal recognition particle-docking protein FtsY [Vibrio harveyi
           1DA3]
          Length = 416

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/304 (41%), Positives = 197/304 (64%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++D+ + EELE+ L+ +D+G+   
Sbjct: 104 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMNTT 163

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY +  E + ++L  + +P   D +  P+VIL+VGVNGV
Sbjct: 164 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDTNKTPYVILMVGVNGV 223

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 224 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 283

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 284 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 343

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF 
Sbjct: 344 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFE 403

Query: 303 AKDF 306
            ++F
Sbjct: 404 TQEF 407


>gi|114321806|ref|YP_743489.1| signal recognition particle-docking protein FtsY [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114228200|gb|ABI57999.1| signal recognition particle-docking protein FtsY [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 389

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 131/305 (42%), Positives = 187/305 (61%), Gaps = 2/305 (0%)

Query: 16  KLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73
           +L  G + T   L EGI  + + S+ +DD + EELE  L+ +D+GV   Q+I++ L  + 
Sbjct: 82  RLRAGLSRTRSGLTEGIASLFLGSKTIDDDLLEELETQLLLADVGVEATQRIIDGLTARL 141

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           R A+      +   + E +  +L P   P       +P VIL+VG+NG GKTT IGKL++
Sbjct: 142 RRAELKDTDALFQALKEDMTAILSPCEAPLELPNEPKPFVILMVGINGAGKTTTIGKLAR 201

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +  D G +VMLAAGDTFR+AA++QL+ W +R +   +    G+DAA++ ++ ++ A+A+ 
Sbjct: 202 RFGDQGKRVMLAAGDTFRAAAVEQLQAWGERNNTPVIAQHTGADAASVVFDGWQAAKARG 261

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DVLI DTAGRLH  S LM  + K+ RVL + DP APH  L VLDA  GQNAL Q   FH
Sbjct: 262 SDVLIADTAGRLHTQSNLMEELRKIKRVLGKQDPTAPHETLLVLDAGNGQNALAQAREFH 321

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
              G  G+++TK+DGTARGG +  I    ++P+ F+GVGE   DL PFVA DF   +   
Sbjct: 322 QAIGLDGVVITKLDGTARGGVIFAIAEQLRLPIRFIGVGESAEDLRPFVAADFVEALLQR 381

Query: 314 LDYGE 318
            D G+
Sbjct: 382 DDQGQ 386


>gi|170724571|ref|YP_001758597.1| signal recognition particle-docking protein FtsY [Shewanella woodyi
           ATCC 51908]
 gi|169809918|gb|ACA84502.1| signal recognition particle-docking protein FtsY [Shewanella woodyi
           ATCC 51908]
          Length = 491

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 128/295 (43%), Positives = 187/295 (63%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    +++  L  
Sbjct: 184 FFARLKRGLKRTSENIGSGFIGLFKGKKIDDDLFEELEEQLLIADVGVETTTRLISSLTE 243

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K +     LY++  E + K L P S P   + +  P VIL+VGVNGVGKTT IGKL
Sbjct: 244 QASRKQLKDGEALYELLREEMQKTLEPASIPLVPENADGPFVILMVGVNGVGKTTTIGKL 303

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A++ ++A + A+A
Sbjct: 304 AKQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVVAQHTGADSASVLFDALQAARA 363

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+ D +APH V+  LDA+TGQNA+ Q E+
Sbjct: 364 RNVDVLIADTAGRLQNKSHLMDELKKVVRVMKKQDENAPHEVMLTLDASTGQNAISQAEL 423

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F    G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  F AKDF
Sbjct: 424 FKQAVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDF 478


>gi|293391631|ref|ZP_06635965.1| cell division protein FtsY [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952165|gb|EFE02284.1| cell division protein FtsY [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 390

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI+  L  
Sbjct: 86  FFSRLLKGLVKTKQNIGAGFRSFFLGKKIDDDLFEELEEQLLIADIGVPTTSKIINNLTQ 145

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               + +     LY   +L + ++L P+++P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 146 HATRQQLQNADSLYQQLKLEMGEILKPVAQPLCIDGSKKPYVILMVGVNGVGKTTTIGKL 205

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 206 ARKFQMEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 265

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 266 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKL 325

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL  F A++F
Sbjct: 326 FHEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFNAEEF 380


>gi|229515823|ref|ZP_04405281.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           TMA 21]
 gi|229347086|gb|EEO12047.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           TMA 21]
          Length = 391

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 87  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 146

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 147 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 206

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 207 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 266

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 267 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 326

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 327 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 382


>gi|148827958|ref|YP_001292711.1| cell division protein FtsY [Haemophilus influenzae PittGG]
 gi|148719200|gb|ABR00328.1| cell division protein FtsY [Haemophilus influenzae PittGG]
          Length = 400

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 190/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 96  FFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTE 155

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K++    +LY   ++ +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 156 HASRKELQDAELLYQQLKVEMADILEPVARPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 215

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  V+LAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 216 ARKFQAEGKSVLLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 275

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 276 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 335

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F
Sbjct: 336 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEF 390


>gi|153803614|ref|ZP_01958200.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           MZO-3]
 gi|124120853|gb|EAY39596.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           MZO-3]
          Length = 391

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 87  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 146

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 147 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 206

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 207 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 266

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 267 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 326

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 327 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 382


>gi|149191502|ref|ZP_01869751.1| cell division protein FtsY [Vibrio shilonii AK1]
 gi|148834690|gb|EDL51678.1| cell division protein FtsY [Vibrio shilonii AK1]
          Length = 414

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 126/304 (41%), Positives = 194/304 (63%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   +   + +DD + EELE+ L+ +D+G+   
Sbjct: 102 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKEIDDELFEELEEQLLIADVGMNTT 161

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI++ L  K    D+     LY +  E + ++L  + KP   D +  P VIL+VGVNGV
Sbjct: 162 VKIIDSLTEKASRADLKDGEALYGLLKEEMAEILSHVEKPLEVDSTKMPFVILMVGVNGV 221

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ 
Sbjct: 222 GKTTTIGKLAKQYQAQGKKVMLAAGDTFRAAAVEQLQVWGERNDVPVIAQHTGADSASVI 281

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 282 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDESAPHEIMLTLDAGTG 341

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  +    +IP+ ++GVGE I+DL PF 
Sbjct: 342 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGESIDDLRPFE 401

Query: 303 AKDF 306
            +DF
Sbjct: 402 TQDF 405


>gi|153830010|ref|ZP_01982677.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           623-39]
 gi|148874495|gb|EDL72630.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           623-39]
          Length = 385

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 81  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 140

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 141 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 200

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 201 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 260

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 261 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 320

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 321 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 376


>gi|327483045|gb|AEA77452.1| Signal recognition particle receptor protein FtsY [Vibrio cholerae
           LMA3894-4]
          Length = 390

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 86  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 145

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 146 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 205

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 206 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 265

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 266 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 325

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 326 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 381


>gi|297581816|ref|ZP_06943737.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           RC385]
 gi|297533910|gb|EFH72750.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           RC385]
          Length = 397

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 93  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 152

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 153 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 212

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 213 LAKQFQAQGEKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 272

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 273 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 332

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 333 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 388


>gi|157373360|ref|YP_001471960.1| signal recognition particle-docking protein FtsY [Shewanella
           sediminis HAW-EB3]
 gi|157315734|gb|ABV34832.1| signal recognition particle-docking protein FtsY [Shewanella
           sediminis HAW-EB3]
          Length = 540

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 189/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +G   TS  +  G   + S +++DD + EELE+ L+ +D+GV    ++++ L  
Sbjct: 232 FFARLKRGLKRTSENIGSGFVSLFSGKKIDDDLFEELEEQLLIADVGVETTTRLIDSLTE 291

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K +     LY++  + + K L P+S P   + +  P VIL+VGVNGVGKTT IGKL
Sbjct: 292 QASRKQLKDGEALYEILRDEMQKTLEPVSIPLVPESADGPFVILMVGVNGVGKTTTIGKL 351

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A++ ++A + A+A
Sbjct: 352 AKQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVVAQHTGADSASVLFDALQAARA 411

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K+IRV+K+ D  APH V+  LDA+TGQNA+ Q E+
Sbjct: 412 RNIDILIADTAGRLQNKAHLMDELKKVIRVMKKQDESAPHEVMLTLDASTGQNAISQAEL 471

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F    G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  F AKDF
Sbjct: 472 FKKAVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDF 526


>gi|291614826|ref|YP_003524983.1| signal recognition particle-docking protein FtsY [Sideroxydans
           lithotrophicus ES-1]
 gi|291584938|gb|ADE12596.1| signal recognition particle-docking protein FtsY [Sideroxydans
           lithotrophicus ES-1]
          Length = 315

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 140/319 (43%), Positives = 201/319 (63%), Gaps = 18/319 (5%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           + N   ++ES SW+ +LT   A T  +L    + ++   ++DD + EELE +LI +D+G+
Sbjct: 5   LKNTPASAESKSWLSRLTGSLARTGGQLS---SLLVPGGKIDDELYEELETILITADVGM 61

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHV 113
              + ++ ++  +R+ K+   QR L +  +L       + K+L PL+KP +   S RP V
Sbjct: 62  DATRSLLADV--RRHVKE---QR-LTEAGQLKEALAHALLKLLQPLAKPLDVGAS-RPFV 114

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I++ GVNG GKTT IGKL+K   + G  V+LAAGDTFR+AA +QL  W  R     +  +
Sbjct: 115 IMLCGVNGAGKTTSIGKLAKHFQNQGKSVLLAAGDTFRAAAREQLMEWGRRNDVTVIAQQ 174

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAAA+ Y+A + AQA+ +DV++ DTAGRL   + LM  I K+ RV+ +  P APH V
Sbjct: 175 SG-DAAAVIYDAVQAAQARGIDVVLADTAGRLTTQAHLMEEIKKVKRVIAKALPGAPHEV 233

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLDA TGQNAL QV+ F      TGL++TK+DGTA+GG +  I   H IPV F+GVGE
Sbjct: 234 LLVLDANTGQNALSQVKSFDDALQVTGLVLTKLDGTAKGGVIAAIAKAHPIPVRFIGVGE 293

Query: 294 GINDLEPFVAKDFSAVITG 312
            ++DL PFVA+DF A + G
Sbjct: 294 ALDDLRPFVAEDFVAALLG 312


>gi|190571642|ref|YP_001976000.1| signal recognition particle protein FtsY [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213019044|ref|ZP_03334851.1| signal recognition particle protein FtsY [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357914|emb|CAQ55375.1| signal recognition particle protein FtsY [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995153|gb|EEB55794.1| signal recognition particle protein FtsY [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 303

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 130/304 (42%), Positives = 192/304 (63%), Gaps = 3/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S    L +G   TS +   G+ +I S  ++LD  + ++LE+LLI  DIG   ++ ++++
Sbjct: 1   MSLFSNLYQGLLKTSSRFSGGVKNIFSGKKKLDQSLLDDLEELLISMDIGHKTSRLLIDK 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + ++  +V    +   +   I  +L P+ +P     + +PH+I+V GVNG GKTT IG
Sbjct: 61  LASIKFESEVEHSVITQQLMSEIESILNPVVQPL--ILNKKPHIIMVCGVNGNGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K  + G  VML A DTFR+AA +QL IWA+R+    V  E GSD+A++AY A  QA
Sbjct: 119 KLAYKYKEKGKSVMLVACDTFRAAASEQLNIWAERSDCSIVTGEHGSDSASVAYRAVNQA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
               VDV++IDTAGRL NN  LM  + K+ R +K+LD  APH V+ VLDATTGQNA  Q+
Sbjct: 179 IKDSVDVVLIDTAGRLQNNVNLMQELSKIHRTIKKLDDTAPHDVILVLDATTGQNAYSQL 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F  + G TGLI+TK+DGTA+GG +I +   +K+ ++ +G+GE I DL  F  K+F+  
Sbjct: 239 EAFSKMVGVTGLIVTKLDGTAKGGVVIGLAEAYKVKLHAIGIGESIEDLREFTGKEFAEA 298

Query: 310 ITGC 313
           +  C
Sbjct: 299 LFKC 302


>gi|254291953|ref|ZP_04962734.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           AM-19226]
 gi|150422163|gb|EDN14129.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           AM-19226]
          Length = 389

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 85  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 144

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 145 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLLIDTEKKPYVILMVGVNGVGKTTTIGK 204

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 205 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 264

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 265 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 324

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 325 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 380


>gi|325577122|ref|ZP_08147606.1| cell division protein FtsY [Haemophilus parainfluenzae ATCC 33392]
 gi|325160704|gb|EGC72825.1| cell division protein FtsY [Haemophilus parainfluenzae ATCC 33392]
          Length = 485

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 191/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 180 FFSRLVKGLLKTKQNIGAGFRAFFLGKKIDDDLFEELEEQLLIADIGVPTTNKIIKNLTE 239

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +    +LY   ++ + ++L P++KP   D + +P+VIL+VGVNGVGKTT IGKL
Sbjct: 240 HASRKQLQDAELLYQQLKVEMVEILKPVAKPLVIDTTKKPYVILMVGVNGVGKTTTIGKL 299

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K  + G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ ++A + A A
Sbjct: 300 ARKFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAA 359

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+++ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 360 RNIDILIADTAGRLQNKNNLMDELKKIVRVMRKYDETAPHEIMLTLDAGTGQNAISQAKL 419

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL  F A++F
Sbjct: 420 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFNAEEF 474


>gi|251793357|ref|YP_003008085.1| cell division protein FtsY [Aggregatibacter aphrophilus NJ8700]
 gi|247534752|gb|ACS97998.1| cell division protein FtsY [Aggregatibacter aphrophilus NJ8700]
          Length = 495

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 188/295 (63%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI+  L  
Sbjct: 191 FFSRLLKGLVKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLTQ 250

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               + +     LY   +L + ++L P+++P   D S +P+VIL+VGVNGVGKTT IGK+
Sbjct: 251 HATRQQLQNADTLYQQLKLEMGQILKPVAQPLRIDGSKKPYVILMVGVNGVGKTTTIGKV 310

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V   IGSD+A++ ++A + A A
Sbjct: 311 ARKFQMEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSIGSDSASVIFDAMQSAAA 370

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 371 RNIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKL 430

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL  F A++F
Sbjct: 431 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFNAEEF 485


>gi|237728779|ref|ZP_04559260.1| cell division protein FtsY [Citrobacter sp. 30_2]
 gi|226909401|gb|EEH95319.1| cell division protein FtsY [Citrobacter sp. 30_2]
          Length = 508

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 206 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 265

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N D    P VIL+VGVNGVGKTT IGKL
Sbjct: 266 GASRKQLKDAEALYGLLKEEMGEILAKVDEPLNVD-GKTPFVILMVGVNGVGKTTTIGKL 324

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 325 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 384

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 385 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTGQNAISQAKL 444

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 445 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 499


>gi|113460560|ref|YP_718624.1| signal recognition particle-docking protein FtsY [Haemophilus
           somnus 129PT]
 gi|112822603|gb|ABI24692.1| signal recognition particle-docking protein FtsY [Haemophilus
           somnus 129PT]
          Length = 447

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 188/295 (63%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G   +   +++DD + EELE+ L+ +DIGV    KI+  L+ 
Sbjct: 144 FFSRLVKGLLKTKQNIGIGFRSLFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLIQ 203

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +    +LY   ++ +  +L P+ +P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 204 HASRKQLQEADLLYQQLKVELADILKPVEQPLQLDNSKKPYVILMVGVNGVGKTTTIGKL 263

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G  VMLAAGDTFR+AA++QL++W +R     +    GSD+A++ ++A + A A
Sbjct: 264 ANQFQRQGKSVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQSTGSDSASVIFDAMQSAVA 323

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LD+ TGQNA+ Q ++
Sbjct: 324 RNIDVLIADTAGRLQNKNNLMDELKKIVRVIKKCDETAPHEIMLTLDSGTGQNAISQAKL 383

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I+DL PF A +F
Sbjct: 384 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIDDLRPFQADEF 438


>gi|261210150|ref|ZP_05924447.1| signal recognition particle receptor protein FtsY [Vibrio sp.
           RC341]
 gi|260840690|gb|EEX67239.1| signal recognition particle receptor protein FtsY [Vibrio sp.
           RC341]
          Length = 388

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 84  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTTKIITNLT 143

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 144 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 203

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 204 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 263

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 264 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 323

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 324 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 379


>gi|153874953|ref|ZP_02002963.1| signal recognition particle-docking protein FtsY [Beggiatoa sp. PS]
 gi|152068583|gb|EDN67037.1| signal recognition particle-docking protein FtsY [Beggiatoa sp. PS]
          Length = 328

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 194/302 (64%), Gaps = 3/302 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66
           S+   W+ +L +G + T   L   ++D++  +R +DD + EE+E LL+ +D+GV   Q +
Sbjct: 20  SKKSGWLDRLKQGLSRTREVLTTDLSDLLQVKRAIDDELLEEIETLLLTADVGVEATQAL 79

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGK 124
           + +L  +   K ++    L+D + E +  +L P+ +P    D S++P VIL+VGVNG GK
Sbjct: 80  MTDLTQRVNKKQLNDSEALFDALREKMQAILQPVEQPLILPDKSNKPFVILMVGVNGAGK 139

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K+    G  VMLAAGDTFR+AA++QLK+W +R     +     +D+A++ ++
Sbjct: 140 TTTIGKLAKRFQAQGHSVMLAAGDTFRAAAVEQLKVWGERNEVPVIAQHDRADSASVIFD 199

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A A+ +DVLI DTAGRLH  S LM  + K+ RV+K+LD  APH  L V+DA  GQN
Sbjct: 200 ALQAATARGIDVLIADTAGRLHTQSNLMEELKKVQRVMKKLDDTAPHESLLVIDAGIGQN 259

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q E FH   G TGL +TK+DGTA+GG +  +     +P+ F+GVGE I+DL PF A 
Sbjct: 260 AIVQAEQFHQAIGLTGLTLTKLDGTAKGGIMFAVAKRIGLPIRFIGVGEKIDDLRPFEAA 319

Query: 305 DF 306
           +F
Sbjct: 320 NF 321


>gi|254230125|ref|ZP_04923521.1| signal recognition particle-docking protein FtsY, putative [Vibrio
           sp. Ex25]
 gi|262392912|ref|YP_003284766.1| signal recognition particle receptor protein FtsY [Vibrio sp. Ex25]
 gi|151937370|gb|EDN56232.1| signal recognition particle-docking protein FtsY, putative [Vibrio
           sp. Ex25]
 gi|262336506|gb|ACY50301.1| signal recognition particle receptor protein FtsY [Vibrio sp. Ex25]
          Length = 407

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 126/304 (41%), Positives = 196/304 (64%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++D+ + EELE+ L+ +D+G+   
Sbjct: 95  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMNTT 154

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY +  E + ++L  + +P   D +  P+VIL+VGVNGV
Sbjct: 155 TKIINNLTEKATRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSNKTPYVILMVGVNGV 214

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 215 GKTTTIGKLAKQFQTQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 274

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 275 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 334

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 335 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFE 394

Query: 303 AKDF 306
            ++F
Sbjct: 395 TQEF 398


>gi|259910113|ref|YP_002650469.1| Cell division protein [Erwinia pyrifoliae Ep1/96]
 gi|224965735|emb|CAX57267.1| Cell division protein [Erwinia pyrifoliae Ep1/96]
 gi|283480210|emb|CAY76126.1| Cell division protein ftsY homolog [Erwinia pyrifoliae DSM 12163]
          Length = 488

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 128/300 (42%), Positives = 191/300 (63%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   ++I+  L  
Sbjct: 186 FFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVETTRRIIGNLTN 245

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +   K +     LY     D++E++ K+  PL      D S + P VIL+VGVNGVGKTT
Sbjct: 246 QASRKQLRDAEALYGLLKTDMAEILAKVEAPL------DISGKTPFVILMVGVNGVGKTT 299

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A 
Sbjct: 300 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVIFDAI 359

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ VDVLI DTAGRL N + LM  + K+ RV+K+LD  APH V+  +DA+TGQNA+
Sbjct: 360 QAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDASTGQNAI 419

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI+DL PF A DF
Sbjct: 420 SQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADLFTIPIRYIGVGEGIDDLRPFKADDF 479


>gi|310765701|gb|ADP10651.1| Cell division protein [Erwinia sp. Ejp617]
          Length = 492

 Score =  238 bits (608), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 128/300 (42%), Positives = 191/300 (63%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   ++I+  L  
Sbjct: 190 FFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVETTRRIIGNLTN 249

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +   K +     LY     D++E++ K+  PL      D S + P VIL+VGVNGVGKTT
Sbjct: 250 QASRKQLRDAEALYGLLKTDMAEILAKVESPL------DISGKMPFVILMVGVNGVGKTT 303

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A 
Sbjct: 304 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVIFDAI 363

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ VDVLI DTAGRL N + LM  + K+ RV+K+LD  APH V+  +DA+TGQNA+
Sbjct: 364 QAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDASTGQNAI 423

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI+DL PF A DF
Sbjct: 424 SQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADLFTIPIRYIGVGEGIDDLRPFKADDF 483


>gi|152998323|ref|YP_001343158.1| signal recognition particle-docking protein FtsY [Marinomonas sp.
           MWYL1]
 gi|150839247|gb|ABR73223.1| signal recognition particle-docking protein FtsY [Marinomonas sp.
           MWYL1]
          Length = 413

 Score =  238 bits (608), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 131/306 (42%), Positives = 200/306 (65%), Gaps = 16/306 (5%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           +LSW ++   G + T   L  G++ +I   +++DD + EELE  L+ +D+G+   Q ++ 
Sbjct: 107 ALSWSQRFKLGLSRTRSGLGNGLSSVIGGHKKVDDNLLEELETQLLMADVGIDATQTLIS 166

Query: 69  EL---LTKRYAKDVS--VQRVLYDVSELI---HKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            L   L ++  KD +  +  +  D++ ++    +ML P+SK         P VIL+VGVN
Sbjct: 167 ALTDKLNRKELKDSATLLSHLKADMNGILSQSQQMLEPVSK-------DGPFVILMVGVN 219

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+KK    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A+
Sbjct: 220 GVGKTTTIGKLAKKYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSAS 279

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A + A+AK VD++I DTAGRL N + LM  + K++RV+K+LD +APH V+ VLDA 
Sbjct: 280 VIYDAIESAKAKGVDIVIADTAGRLQNKANLMNELSKVVRVMKKLDENAPHEVMLVLDAG 339

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F    G +G+ +TK+DGTA+GG +  I     IP+ ++GVGE  +DL P
Sbjct: 340 TGQNAISQAKLFSEAVGVSGITLTKLDGTAKGGIIFAIAKQFGIPIRYIGVGEQADDLRP 399

Query: 301 FVAKDF 306
           FVA++F
Sbjct: 400 FVAQEF 405


>gi|315635037|ref|ZP_07890318.1| cell division protein FtsY [Aggregatibacter segnis ATCC 33393]
 gi|315476299|gb|EFU67050.1| cell division protein FtsY [Aggregatibacter segnis ATCC 33393]
          Length = 518

 Score =  238 bits (608), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI+  L  
Sbjct: 214 FFSRLLKGLVKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLTQ 273

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               + +     LY   +L + ++L P+++P   D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 274 HATRQQLQNADTLYQQLKLEMGEILKPVAQPLRIDGSKKPYVILMVGVNGVGKTTTIGKL 333

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 334 ARKFQMEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 393

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 394 RNIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKL 453

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL  F A++F
Sbjct: 454 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFNAEEF 508


>gi|229508897|ref|ZP_04398387.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           B33]
 gi|229606695|ref|YP_002877343.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           MJ-1236]
 gi|227011852|gb|ACP08062.1| cell division protein FtsY [Vibrio cholerae O395]
 gi|229354014|gb|EEO18947.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           B33]
 gi|229369350|gb|ACQ59773.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           MJ-1236]
          Length = 389

 Score =  238 bits (608), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 85  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 144

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 145 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 204

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 205 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 264

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 265 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 324

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 325 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 380


>gi|121587716|ref|ZP_01677477.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           2740-80]
 gi|121548015|gb|EAX58093.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           2740-80]
          Length = 395

 Score =  238 bits (608), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 91  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 150

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 151 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 210

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 211 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 270

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 271 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 330

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 331 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 386


>gi|15640178|ref|NP_229805.1| cell division protein FtsY [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|229517011|ref|ZP_04406457.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           RC9]
 gi|255743904|ref|ZP_05417859.1| signal recognition particle receptor protein FtsY [Vibrio cholera
           CIRS 101]
 gi|9654548|gb|AAF93324.1| cell division protein FtsY [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|229346074|gb|EEO11046.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           RC9]
 gi|255738387|gb|EET93777.1| signal recognition particle receptor protein FtsY [Vibrio cholera
           CIRS 101]
          Length = 391

 Score =  238 bits (608), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 87  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 146

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 147 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 206

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 207 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 266

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 267 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 326

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 327 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 382


>gi|227080382|ref|YP_002808933.1| cell division protein FtsY [Vibrio cholerae M66-2]
 gi|254851533|ref|ZP_05240883.1| cell division protein FtsY [Vibrio cholerae MO10]
 gi|262151142|ref|ZP_06028281.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           INDRE 91/1]
 gi|262167011|ref|ZP_06034728.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           RC27]
 gi|298501091|ref|ZP_07010891.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           MAK 757]
 gi|227008270|gb|ACP04482.1| cell division protein FtsY [Vibrio cholerae M66-2]
 gi|254847238|gb|EET25652.1| cell division protein FtsY [Vibrio cholerae MO10]
 gi|262024529|gb|EEY43213.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           RC27]
 gi|262031036|gb|EEY49661.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           INDRE 91/1]
 gi|297540125|gb|EFH76186.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           MAK 757]
          Length = 393

 Score =  238 bits (608), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 89  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 148

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 149 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 208

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 209 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 268

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 269 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 328

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 329 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 384


>gi|147673157|ref|YP_001218274.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           O395]
 gi|229508422|ref|ZP_04397926.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           BX 330286]
 gi|146315040|gb|ABQ19579.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           O395]
 gi|229354695|gb|EEO19617.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           BX 330286]
          Length = 387

 Score =  238 bits (608), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 83  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 142

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 143 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 202

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 203 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 262

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 263 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 322

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 323 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 378


>gi|121728299|ref|ZP_01681330.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           V52]
 gi|121629429|gb|EAX61858.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           V52]
          Length = 397

 Score =  238 bits (608), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 93  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 152

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 153 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 212

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 213 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 272

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 273 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 332

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 333 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 388


>gi|269968645|ref|ZP_06182642.1| signal recognition particle-docking protein FtsY [Vibrio
           alginolyticus 40B]
 gi|269826732|gb|EEZ81069.1| signal recognition particle-docking protein FtsY [Vibrio
           alginolyticus 40B]
          Length = 408

 Score =  238 bits (608), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 126/304 (41%), Positives = 196/304 (64%), Gaps = 1/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++D+ + EELE+ L+ +D+G+   
Sbjct: 96  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMNTT 155

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY +  E + ++L  + +P   D +  P+VIL+VGVNGV
Sbjct: 156 TKIINNLTEKATRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSNKTPYVILMVGVNGV 215

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 216 GKTTTIGKLAKQFQTQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 275

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 276 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 335

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 336 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFE 395

Query: 303 AKDF 306
            ++F
Sbjct: 396 TQEF 399


>gi|238755241|ref|ZP_04616586.1| Cell division protein ftsY [Yersinia ruckeri ATCC 29473]
 gi|238706582|gb|EEP98954.1| Cell division protein ftsY [Yersinia ruckeri ATCC 29473]
          Length = 528

 Score =  238 bits (608), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 226 FFARLKRSLLKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIIASLTE 285

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +     +P+VIL+VGVNGVGKTT IGKL
Sbjct: 286 HASRKQLKDAEALYGKLKEEMSEILAKVDKPLDVS-GKKPYVILMVGVNGVGKTTTIGKL 344

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 345 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 404

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 405 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 464

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 465 FNETVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 519


>gi|258622824|ref|ZP_05717841.1| signal recognition particle-docking protein FtsY [Vibrio mimicus
           VM573]
 gi|258584885|gb|EEW09617.1| signal recognition particle-docking protein FtsY [Vibrio mimicus
           VM573]
          Length = 398

 Score =  238 bits (608), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 94  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTTKIITNLT 153

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   +   +P+VIL+VGVNGVGKTT IGK
Sbjct: 154 AKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIEADKKPYVILMVGVNGVGKTTTIGK 213

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 214 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 273

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 274 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 333

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 334 LFSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 389


>gi|285018841|ref|YP_003376552.1| cell division protein [Xanthomonas albilineans GPE PC73]
 gi|283474059|emb|CBA16560.1| hypothetical cell division protein [Xanthomonas albilineans]
          Length = 421

 Score =  238 bits (608), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 121/272 (44%), Positives = 176/272 (64%), Gaps = 9/272 (3%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELL----TKRYAKDVSVQRVLY-DVSELIHK 94
           +LDD + + +E  LI +D+G+     ++E+L      + +A   ++QR L  D+  ++H 
Sbjct: 143 KLDDDLLDAIETALITADVGIPATTALIEQLRKRMKAREFADATALQRALRADLLAILH- 201

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
              P++KP   D + +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA
Sbjct: 202 ---PVAKPLQIDPNAKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGHSLMLAAGDTFRAAA 258

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           + QL+IW +R     +     +DAA++A++A +  +A+  D+LI DTAGRLH  + LM  
Sbjct: 259 VAQLQIWGERNGVSVIAQGQNADAASVAFDALQAGKARGTDILIADTAGRLHTQTGLMNE 318

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           +GK+ RV+ +LD  APH VL V+D TTGQNAL Q+  FHA  G TGL++TK+DGTA+GG 
Sbjct: 319 LGKIRRVIGKLDASAPHEVLMVIDGTTGQNALSQLRQFHAAVGVTGLVVTKLDGTAKGGV 378

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +  +     IP+ F G+GE   DL  F A+ F
Sbjct: 379 VFALAREFGIPIRFAGIGERPEDLRVFDAEAF 410


>gi|262172903|ref|ZP_06040581.1| signal recognition particle receptor protein FtsY [Vibrio mimicus
           MB-451]
 gi|261893979|gb|EEY39965.1| signal recognition particle receptor protein FtsY [Vibrio mimicus
           MB-451]
          Length = 392

 Score =  238 bits (608), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 88  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTTKIITNLT 147

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   +   +P+VIL+VGVNGVGKTT IGK
Sbjct: 148 AKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETDKKPYVILMVGVNGVGKTTTIGK 207

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 208 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 267

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 268 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 327

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 328 LFSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 383


>gi|291284804|ref|YP_003501622.1| Cell division protein FtsY [Escherichia coli O55:H7 str. CB9615]
 gi|290764677|gb|ADD58638.1| Cell division protein FtsY [Escherichia coli O55:H7 str. CB9615]
          Length = 498

 Score =  238 bits (608), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + +ML  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEMLAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|153826285|ref|ZP_01978952.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           MZO-2]
 gi|149739953|gb|EDM54132.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           MZO-2]
          Length = 395

 Score =  238 bits (608), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 91  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 150

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 151 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 210

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 211 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 270

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 271 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 330

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DG+A+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 331 LFSDVAPITGITLTKLDGSAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 386


>gi|78043121|ref|YP_360274.1| signal recognition particle-docking protein FtsY [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995236|gb|ABB14135.1| signal recognition particle-docking protein FtsY [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 303

 Score =  238 bits (608), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 132/297 (44%), Positives = 191/297 (64%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  +L +    T   +   I D+     +D+ + E+LE++LI  D+GV  + ++VE+L
Sbjct: 1   MGFFDRLKESLIKTKQNIVAKIEDVFKKSTVDEELFEKLEEILIEGDVGVKPSLELVEKL 60

Query: 71  L-TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             T R  +    +++   + E I K+L         +    P VILVVGVNGVGKTT IG
Sbjct: 61  RKTARERRITDSEQLKQVLKEEILKILEAGDNKLK-NVPRTPLVILVVGVNGVGKTTTIG 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+      G +V+LAAGDTFR+AAI+QL+IW ++     +  + GSD AA+A++A K A
Sbjct: 120 KLAYYFKQQGKQVLLAAGDTFRAAAIEQLEIWGNKVGCPVIKQKEGSDPAAVAFDAVKAA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+K+DVLIIDTAGRLH  + LM  + K+ RV++R  P AP  VL VLDATTGQNAL QV
Sbjct: 180 IARKIDVLIIDTAGRLHTKTNLMEELRKVKRVIERELPGAPDEVLLVLDATTGQNALSQV 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           E F+     TGL++TK+DGTA+GG +I I  +++IP+ F+GVGE ++DL PF  ++F
Sbjct: 240 EYFNKALDLTGLVLTKLDGTAKGGVIIGIKSSYQIPIKFIGVGEKMDDLRPFDPQEF 296


>gi|304397880|ref|ZP_07379756.1| signal recognition particle-docking protein FtsY [Pantoea sp. aB]
 gi|304354591|gb|EFM18962.1| signal recognition particle-docking protein FtsY [Pantoea sp. aB]
          Length = 566

 Score =  238 bits (607), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 121/295 (41%), Positives = 184/295 (62%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   ++I+  L  
Sbjct: 264 FFARLKRSLVKTRQNLGSGFISLFRGKKIDDDLFDELEEQLLIADVGVDTTRRIITHLTQ 323

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K +     LY + +  +  +L  +  P        P VIL+VGVNGVGKTT IGKL
Sbjct: 324 QANRKQLRDAEALYGLLKAEMASILANVDAPLEVS-GKTPFVILMVGVNGVGKTTTIGKL 382

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A++
Sbjct: 383 ARQYQAEGKTVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKS 442

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K+ RV+K+LD  APH V+  LDA+TGQNA+ Q  +
Sbjct: 443 RGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDSAPHEVMLTLDASTGQNAVSQARL 502

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF A+DF
Sbjct: 503 FNEAVGVTGIALTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFKAEDF 557


>gi|262404882|ref|ZP_06081436.1| signal recognition particle receptor protein FtsY [Vibrio sp.
           RC586]
 gi|262348966|gb|EEY98105.1| signal recognition particle receptor protein FtsY [Vibrio sp.
           RC586]
          Length = 399

 Score =  238 bits (607), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 95  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTTKIIANLT 154

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   +   +P+VIL+VGVNGVGKTT IGK
Sbjct: 155 AKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETDKKPYVILMVGVNGVGKTTTIGK 214

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 215 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 274

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 275 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 334

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 335 LFSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 390


>gi|262163696|ref|ZP_06031437.1| signal recognition particle receptor protein FtsY [Vibrio mimicus
           VM223]
 gi|262027912|gb|EEY46576.1| signal recognition particle receptor protein FtsY [Vibrio mimicus
           VM223]
          Length = 390

 Score =  238 bits (607), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 86  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTTKIITNLT 145

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   +   +P+VIL+VGVNGVGKTT IGK
Sbjct: 146 AKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETDKKPYVILMVGVNGVGKTTTIGK 205

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 206 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 265

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 266 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 325

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 326 LFSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 381


>gi|254226613|ref|ZP_04920194.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           V51]
 gi|125620885|gb|EAZ49238.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           V51]
          Length = 393

 Score =  238 bits (607), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 192/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 89  SFFARLKRSLSRTKANIGVGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 148

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 149 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 208

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 209 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 268

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 269 ARGMDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 328

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 329 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 384


>gi|152978128|ref|YP_001343757.1| signal recognition particle-docking protein FtsY [Actinobacillus
           succinogenes 130Z]
 gi|150839851|gb|ABR73822.1| signal recognition particle-docking protein FtsY [Actinobacillus
           succinogenes 130Z]
          Length = 504

 Score =  238 bits (607), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 126/298 (42%), Positives = 191/298 (64%), Gaps = 7/298 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---EE 69
           +  +L KG   T   +  G     S +++DD + EELE+ L+ +DIGV    KI+   E+
Sbjct: 200 FFSRLLKGLVKTKQNIGAGFRSFFSGKKIDDELFEELEEQLLIADIGVPTTSKIITNLEQ 259

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
             T++  KD  +   LY  + + + ++L P+++P   D S +P+VIL+VGVNGVGKTT I
Sbjct: 260 HATRQQLKDADL---LYQQLKQEMAEILKPVARPLVIDGSKKPYVILMVGVNGVGKTTTI 316

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + 
Sbjct: 317 GKLARQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQS 376

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q
Sbjct: 377 ASARNIDILIADTAGRLQNKNNLMDELKKIVRVIKKYDESAPHEIMLTLDAGTGQNAVSQ 436

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             +F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL  F A +F
Sbjct: 437 ARLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLRTFDADEF 494


>gi|188535387|ref|YP_001909184.1| Cell division protein [Erwinia tasmaniensis Et1/99]
 gi|188030429|emb|CAO98323.1| Cell division protein [Erwinia tasmaniensis Et1/99]
          Length = 494

 Score =  238 bits (607), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 129/300 (43%), Positives = 191/300 (63%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   ++I+  L T
Sbjct: 192 FFARLKRSLVKTRTNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVDTTRRIIGNLTT 251

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +   K +     LY     D++E++ K+  PL      D S + P VIL+VGVNGVGKTT
Sbjct: 252 QASRKQLRDAEALYGLLKTDMAEILAKVESPL------DVSGKTPFVILMVGVNGVGKTT 305

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ ++A 
Sbjct: 306 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQHTGADSASVIFDAI 365

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ VDVLI DTAGRL N S LM  + K+ RV+K+LD  APH V+  +DA+TGQNA+
Sbjct: 366 QAAKARHVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDSAPHEVMLTIDASTGQNAI 425

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL  F A DF
Sbjct: 426 SQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFTIPIRYIGVGEGIEDLRSFKADDF 485


>gi|258514470|ref|YP_003190692.1| signal recognition particle-docking protein FtsY [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778175|gb|ACV62069.1| signal recognition particle-docking protein FtsY [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 312

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/305 (46%), Positives = 196/305 (64%), Gaps = 12/305 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +    T     E I  +++ RR +D+G  EELE++LI +DIG+  A +IVE 
Sbjct: 1   MGFFSRLKESLTKTRKNFVEKIETLVTRRRAIDEGFYEELEEILIGADIGINTAVEIVEN 60

Query: 70  L---LTKRYAKDV-SVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVG 123
           L   + KR   DV +++ VL    ELI  +L     S   N +      VILVVGVNGVG
Sbjct: 61  LRAEVKKRKIDDVETLKEVL---KELICNILGEGGASTALNIN-EDGLTVILVVGVNGVG 116

Query: 124 KTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT IGKL+    +  G KV+LAAGDTFR+AAIDQL+IW++R   + +  + G+D AA+A
Sbjct: 117 KTTTIGKLAYYFKEELGKKVLLAAGDTFRAAAIDQLEIWSNRVGVEMIKHKEGADPAAVA 176

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A++ DVLI+DTAGRLH  S LM  + K+ RV+ +  P AP  +L VLDATTG
Sbjct: 177 YDAIQAARARRSDVLIVDTAGRLHTKSNLMDELKKIKRVINKDMPEAPQEILLVLDATTG 236

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F   A  TG+ +TK+DGTA+GG +I I    KIPV  +G+GEGI DL PF 
Sbjct: 237 QNAVSQAKLFGEAADVTGIALTKLDGTAKGGVVISIKNALKIPVKLIGIGEGIEDLRPFE 296

Query: 303 AKDFS 307
            + F+
Sbjct: 297 PEVFA 301


>gi|89092453|ref|ZP_01165407.1| signal recognition particle receptor FtsY [Oceanospirillum sp.
           MED92]
 gi|89083541|gb|EAR62759.1| signal recognition particle receptor FtsY [Oceanospirillum sp.
           MED92]
          Length = 458

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 129/301 (42%), Positives = 191/301 (63%), Gaps = 2/301 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            E   +  ++  G + T   L E + ++ + ++ +D+ + EE+E LL+ +D+GV    +I
Sbjct: 152 EEKKGFFARIKSGLSKTKANLTEQLGNLFLGAKEIDEDLLEEIETLLLMADVGVEATTEI 211

Query: 67  VEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +  L  K   K +   Q +   + E +  +L    +P N     +P+VIL+VGVNGVGKT
Sbjct: 212 IGRLTDKVERKQLGDAQALQVALKEELAGLLHRSEEPLNIQCEKKPYVILMVGVNGVGKT 271

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ Y+A
Sbjct: 272 TTIGKLAKRFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIYDA 331

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + AQAK VDVLI DTAGRL N   LM  + K++RV K+L P APH V+ VLDA TGQNA
Sbjct: 332 VQSAQAKGVDVLIADTAGRLQNKDNLMQELEKVVRVTKKLSPEAPHEVMLVLDAGTGQNA 391

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q ++F    G TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL PF +++
Sbjct: 392 LSQAKIFKDSVGVTGISLTKLDGTAKGGVIFAIAKQMDLPIRFIGVGEQIDDLRPFKSQE 451

Query: 306 F 306
           F
Sbjct: 452 F 452


>gi|217077937|ref|YP_002335655.1| signal recognition particle-docking protein FtsY [Thermosipho
           africanus TCF52B]
 gi|217037792|gb|ACJ76314.1| signal recognition particle-docking protein FtsY [Thermosipho
           africanus TCF52B]
          Length = 294

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 131/308 (42%), Positives = 195/308 (63%), Gaps = 20/308 (6%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67
           + +  K  +G   T       +  I+S ++LDD  +EE+E+LLI SD+G    + I   +
Sbjct: 1   MGFFEKFKQGLKKTRESFFGKMKSILSGKKLDDETKEEIEELLILSDVGFEATEYILNRI 60

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKT 125
           EEL  +             D  E + K+L+ +   FN +     +P VI +VGVNG GKT
Sbjct: 61  EELKGE-------------DAYESLKKVLLEILN-FNSELKIEKKPFVISMVGVNGSGKT 106

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T  GKL++  S +G  V+LAA DTFR+AAIDQLK+WA+RTS+ F+  + G+D+AA+A++A
Sbjct: 107 TTAGKLAEYFSKSGKSVVLAACDTFRAAAIDQLKVWAERTSSTFIAHQEGADSAAVAFDA 166

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A +K+ D++I+DTAGRLH    LM  + K+ RV+K+    APH VL V+DA TGQN 
Sbjct: 167 VSHAISKEKDIVILDTAGRLHTKKNLMEELRKINRVIKKKIEDAPHEVLLVIDAVTGQNG 226

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L+Q ++F      TG+++TK+DGTA+GG  I I     IP+ F+G+GEG++DL+PF A+D
Sbjct: 227 LQQAKIFKEFVDITGIVLTKLDGTAKGGIAIAIAKELGIPIKFVGLGEGVDDLKPFDAED 286

Query: 306 F-SAVITG 312
           F +A++ G
Sbjct: 287 FVNALLEG 294


>gi|289668668|ref|ZP_06489743.1| cell division protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 551

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98
           +LDD + +E+E  LI +D+G+     ++E L  +  +++ V  Q +   +   +  +L P
Sbjct: 273 KLDDDLLDEIETALITADVGIGATTALIEGLRKRMKSREFVDAQAMFKALRADLIALLQP 332

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP   D S +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL
Sbjct: 333 VSKPLVIDRSVKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 392

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + W DR     +     +DAA++A++A + A+A+  DVLI DTAGRLH  + LM  +GK+
Sbjct: 393 QAWGDRNGVSVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 452

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RVL ++D  APH VL V+D TTGQNA+ Q+  FHA  G TGL++TK+DGTA+GG +  +
Sbjct: 453 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 512

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
                IP+ F G+GE   DL  F
Sbjct: 513 AREFNIPIRFAGIGERPEDLRVF 535


>gi|289661713|ref|ZP_06483294.1| cell division protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 551

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98
           +LDD + +E+E  LI +D+G+     ++E L  +  +++ V  Q +   +   +  +L P
Sbjct: 273 KLDDDLLDEIETALITADVGIGATTALIEGLRKRMKSREFVDAQAMFKALRADLIALLQP 332

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP   D S +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL
Sbjct: 333 VSKPLVIDRSVKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 392

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + W DR     +     +DAA++A++A + A+A+  DVLI DTAGRLH  + LM  +GK+
Sbjct: 393 QAWGDRNGVSVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 452

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RVL ++D  APH VL V+D TTGQNA+ Q+  FHA  G TGL++TK+DGTA+GG +  +
Sbjct: 453 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 512

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
                IP+ F G+GE   DL  F
Sbjct: 513 AREFNIPIRFAGIGERPEDLRVF 535


>gi|90415299|ref|ZP_01223233.1| signal recognition particle receptor FtsY [marine gamma
           proteobacterium HTCC2207]
 gi|90332622|gb|EAS47792.1| signal recognition particle receptor FtsY [marine gamma
           proteobacterium HTCC2207]
          Length = 354

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/306 (43%), Positives = 204/306 (66%), Gaps = 14/306 (4%)

Query: 16  KLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K+ +  + TS     G+ D+ + ++ +DD + EELE LL+ +D+G+    +I+ +L T+R
Sbjct: 57  KMQRALSRTS----RGLGDLFLGAKVIDDDLFEELETLLLMADVGIDATSQIIAQL-TER 111

Query: 75  YAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             + +     ++Q  L D+  LI + L P  +  + + +  P V+LVVGVNGVGKTT IG
Sbjct: 112 SNRAMLKDGAALQAALRDI--LIAR-LTPCEQTLHTENAEGPFVMLVVGVNGVGKTTTIG 168

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+++++   G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A
Sbjct: 169 KMARQLQQQGQSVMLAAGDTFRAAAVEQLQVWGERNQIPVVAQHTGADSASVVFDAVESA 228

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +AK +DV+I DTAGRLHN S LM  + K+ RV  +LD  APH VL VLDA TGQNA+ Q+
Sbjct: 229 RAKNIDVIIADTAGRLHNKSNLMEELKKVRRVAAKLDATAPHEVLLVLDAGTGQNAVAQM 288

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             FHA AG TG+++TK+DGTA+GG +  +     +P+ ++GVGEG++DL+PFVA+ F + 
Sbjct: 289 TEFHATAGVTGIVLTKLDGTAKGGVIFALAEKFSVPIRYIGVGEGVDDLQPFVAEQFVSA 348

Query: 310 ITGCLD 315
           + G  D
Sbjct: 349 LLGQGD 354


>gi|229593151|ref|YP_002875270.1| cell division protein [Pseudomonas fluorescens SBW25]
 gi|229365017|emb|CAY53174.1| cell division protein [Pseudomonas fluorescens SBW25]
          Length = 469

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 126/303 (41%), Positives = 188/303 (62%), Gaps = 3/303 (0%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQ 64
           V +    +  +L +G + TS  + EG+  +   ++ +DD + E++E  L+ +D+GV    
Sbjct: 157 VETSKAGFFSRLKQGLSKTSASIGEGMASLFLGKKVIDDELLEDIETRLLTADVGVEATA 216

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            I++ L  K   K ++    LY  +   +  ML P+  P       +P VILVVGVNG G
Sbjct: 217 VIIQSLTQKVARKQLTDADALYKSLQAELAAMLKPVEAPLVIT-PKKPFVILVVGVNGAG 275

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ +
Sbjct: 276 KTTTIGKLAKKLQSEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVIF 335

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQ
Sbjct: 336 DAVQAAKARNIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQ 395

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A
Sbjct: 396 NAISQAKQFNQTVQLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEA 455

Query: 304 KDF 306
           + F
Sbjct: 456 EPF 458


>gi|261866873|ref|YP_003254795.1| cell division protein FtsY [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412205|gb|ACX81576.1| cell division protein FtsY [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 453

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 188/295 (63%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI+  L  
Sbjct: 148 FFSRLLKGLVKTKQNIGAGFRSFFLGKKIDDDLFEELEEQLLIADIGVPTTTKIINNLTQ 207

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               + +     LY   +L + ++L P+++P + D S +P+VIL+VGVNGVGKTT IGKL
Sbjct: 208 HATRQQLQNADSLYQQLKLEMGEILKPVAQPLHIDGSKKPYVILMVGVNGVGKTTTIGKL 267

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A A
Sbjct: 268 ARKFQMEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAA 327

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 328 RNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKL 387

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL  F A++F
Sbjct: 388 FNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFNAEEF 442


>gi|312174145|emb|CBX82398.1| Cell division protein ftsY homolog [Erwinia amylovora ATCC
           BAA-2158]
          Length = 512

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 128/300 (42%), Positives = 189/300 (63%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   ++I+  L  
Sbjct: 210 FFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVETTRRIIGNLTN 269

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +   K +     LY     D++E++ K+  PL      D S + P VIL+VGVNGVGKTT
Sbjct: 270 QASRKQLRDAEALYGLLKTDMAEILAKVEAPL------DISGKTPFVILMVGVNGVGKTT 323

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A++ ++A 
Sbjct: 324 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNHIPVVAQHTGADSASVIFDAI 383

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ VDVLI DTAGRL N + LM  + K+ RV+K+LD  APH V+  +DA+TGQNA+
Sbjct: 384 QAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDASTGQNAI 443

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF A DF
Sbjct: 444 SQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFTIPIRYIGVGEGIEDLRPFKADDF 503


>gi|150025489|ref|YP_001296315.1| cell division protein FtsY [Flavobacterium psychrophilum JIP02/86]
 gi|149772030|emb|CAL43506.1| Cell division protein FtsY [Flavobacterium psychrophilum JIP02/86]
          Length = 317

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 129/302 (42%), Positives = 188/302 (62%), Gaps = 19/302 (6%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           S S++ KLTK  A  S              ++DD V + LE++L+ SD+GV    KI++ 
Sbjct: 24  SNSFLSKLTKAIAGKS--------------KVDDDVLDNLEEILVSSDVGVNTTLKIIQR 69

Query: 70  LLTK----RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +    +Y     + ++L + ++ L+ +     +  F      +P+VI+VVGVNGVGK
Sbjct: 70  IEARVSNNKYLGTDELNKILREEIAGLLSETNTGEATKFEIPAHKKPYVIMVVGVNGVGK 129

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ +   +G  V+L AGDTFR+AAIDQL+IWADR     V  ++GSD A++A++
Sbjct: 130 TTTIGKLANQFKKSGYSVVLGAGDTFRAAAIDQLQIWADRVGVPIVRQQMGSDPASVAFD 189

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             + A A+  DV+IIDTAGRLHN   LM  + K+ RV++++ P APH V+ VLD +TGQN
Sbjct: 190 TLQSAVAQNADVVIIDTAGRLHNKIGLMNELTKIKRVMEKVIPEAPHDVMLVLDGSTGQN 249

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGINDL+ F   
Sbjct: 250 AFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGINDLQVFNKY 309

Query: 305 DF 306
           +F
Sbjct: 310 EF 311


>gi|323702683|ref|ZP_08114344.1| signal recognition particle-docking protein FtsY [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532346|gb|EGB22224.1| signal recognition particle-docking protein FtsY [Desulfotomaculum
           nigrificans DSM 574]
          Length = 309

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 136/305 (44%), Positives = 193/305 (63%), Gaps = 3/305 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +  A T     E I  + + R+ +D+ + E+LE++LI++D+GV  A  +VE 
Sbjct: 1   MGFFSRLKESLAKTRETFVEKIDQVFTGRKGIDEELYEDLEEVLIQADVGVQTAMTLVER 60

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +     A++V     L D+  E +  ++     P N +    P VI+VVGVNGVGKTT I
Sbjct: 61  VRKGVKARNVQDPARLKDIFQEELEYLMGDKISPINTN-PDGPTVIMVVGVNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++    + G KV+LAAGDTFR+AAIDQL+IWADR   D +  + G+D  A+AY+A   
Sbjct: 120 GKMAHNYKEQGKKVLLAAGDTFRAAAIDQLEIWADRVGVDIIKHQEGADPGAVAYDAVHA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+++K DVL+IDTAGRLHN   LM  + K+ R++ R  P APH VL VLDATTGQNAL Q
Sbjct: 180 ARSRKADVLLIDTAGRLHNKGHLMEELRKVHRIIAREMPGAPHEVLLVLDATTGQNALSQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F      TG+ +TK+DGTA+GG +  IV    IPV  +G+GE ++DL PF  KDF A
Sbjct: 240 AKIFSEAVNVTGIALTKLDGTAKGGVITAIVTEMAIPVKLIGIGERMDDLRPFNPKDFIA 299

Query: 309 VITGC 313
            + G 
Sbjct: 300 ALYGL 304


>gi|300718827|ref|YP_003743630.1| cell division protein [Erwinia billingiae Eb661]
 gi|299064663|emb|CAX61783.1| Cell division protein [Erwinia billingiae Eb661]
          Length = 521

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 127/300 (42%), Positives = 191/300 (63%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   ++I++ L  
Sbjct: 219 FFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTRRIIKNLTQ 278

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +   K +     LY     ++SE++ K+  PL      D + + P VIL+VGVNGVGKTT
Sbjct: 279 QANRKQLRDAEALYGLLKQEMSEILAKVEEPL------DVTGKTPFVILMVGVNGVGKTT 332

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +  + GSD+A++ ++A 
Sbjct: 333 TIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQQTGSDSASVIFDAI 392

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ VDVLI DTAGRL N S LM  + K+ RV+K+LD  APH V+  +DA+TGQNA+
Sbjct: 393 QAAKARNVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDQAPHEVMLTIDASTGQNAI 452

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL  F A DF
Sbjct: 453 SQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFSIPIRYIGVGEGIEDLRAFKADDF 512


>gi|292489957|ref|YP_003532849.1| cell division protein FtsY [Erwinia amylovora CFBP1430]
 gi|291555396|emb|CBA23808.1| Cell division protein ftsY homolog [Erwinia amylovora CFBP1430]
          Length = 494

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/300 (42%), Positives = 189/300 (63%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   ++I+  L  
Sbjct: 192 FFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVETTRRIIGNLTN 251

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +   K +     LY     D++E++ K+  PL      D S + P VIL+VGVNGVGKTT
Sbjct: 252 QASRKQLRDAEALYGLLKTDMAEILAKVEAPL------DISGKTPFVILMVGVNGVGKTT 305

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A++ ++A 
Sbjct: 306 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNHIPVVAQHTGADSASVIFDAI 365

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ VDVLI DTAGRL N + LM  + K+ RV+K+LD  APH V+  +DA+TGQNA+
Sbjct: 366 QAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDASTGQNAI 425

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF A DF
Sbjct: 426 SQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFTIPIRYIGVGEGIEDLRPFKADDF 485


>gi|292900987|ref|YP_003540356.1| cell division protein [Erwinia amylovora ATCC 49946]
 gi|291200835|emb|CBJ47969.1| cell division protein [Erwinia amylovora ATCC 49946]
          Length = 496

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/300 (42%), Positives = 189/300 (63%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   ++I+  L  
Sbjct: 194 FFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVETTRRIIGNLTN 253

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +   K +     LY     D++E++ K+  PL      D S + P VIL+VGVNGVGKTT
Sbjct: 254 QASRKQLRDAEALYGLLKTDMAEILAKVEAPL------DISGKTPFVILMVGVNGVGKTT 307

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A++ ++A 
Sbjct: 308 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNHIPVVAQHTGADSASVIFDAI 367

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ VDVLI DTAGRL N + LM  + K+ RV+K+LD  APH V+  +DA+TGQNA+
Sbjct: 368 QAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDASTGQNAI 427

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF A DF
Sbjct: 428 SQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFTIPIRYIGVGEGIEDLRPFKADDF 487


>gi|270264287|ref|ZP_06192554.1| hypothetical protein SOD_g02240 [Serratia odorifera 4Rx13]
 gi|270041936|gb|EFA15033.1| hypothetical protein SOD_g02240 [Serratia odorifera 4Rx13]
          Length = 525

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 188/299 (62%), Gaps = 10/299 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV    KI+  L  
Sbjct: 223 FFARLKRSLVKTKQNLGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTSKIITSLTQ 282

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
               K +     LY     ++SE++ K+  PL           P+VIL+VGVNGVGKTT 
Sbjct: 283 HASRKQLKDAEALYGKLKEEMSEILTKVEQPLDV-----GGKNPYVILMVGVNGVGKTTT 337

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ Y+A +
Sbjct: 338 IGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSASVIYDAVQ 397

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ 
Sbjct: 398 AAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDDQAPHEVMLTLDASTGQNAVS 457

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A DF
Sbjct: 458 QAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADDF 516


>gi|332159847|ref|YP_004296424.1| cell division protein [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318607607|emb|CBY29105.1| signal recognition particle receptor protein FtsY (=alpha subunit)
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664077|gb|ADZ40721.1| cell division protein [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 481

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 188/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 179 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 238

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P VIL+VGVNGVGKTT IGKL
Sbjct: 239 HASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVS-GKNPFVILMVGVNGVGKTTTIGKL 297

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A++ ++A + A+A
Sbjct: 298 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQAAKA 357

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 358 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 417

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 418 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 472


>gi|312963639|ref|ZP_07778120.1| signal recognition particle-docking protein FtsY [Pseudomonas
           fluorescens WH6]
 gi|311282148|gb|EFQ60748.1| signal recognition particle-docking protein FtsY [Pseudomonas
           fluorescens WH6]
          Length = 463

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/296 (42%), Positives = 187/296 (63%), Gaps = 3/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   ++ +DD + E++E  L+ +D+GV     I++ L 
Sbjct: 158 FFARLKQGLSKTSASIGEGMASLFLGKKVIDDELLEDIETRLLTADVGVEATAVIIQSLT 217

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   K ++    LY  +   +  ML P+  P      ++P VILVVGVNG GKTT IGK
Sbjct: 218 QKVARKQLTDADALYKSLQAELAAMLKPVEAPLVIT-PNKPFVILVVGVNGAGKTTTIGK 276

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A+
Sbjct: 277 LAKKLQGEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVIFDAVQAAK 336

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q +
Sbjct: 337 ARNIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAISQAK 396

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F
Sbjct: 397 QFNQTVQLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 452


>gi|283835857|ref|ZP_06355598.1| cell division protein FtsY [Citrobacter youngae ATCC 29220]
 gi|291068030|gb|EFE06139.1| cell division protein FtsY [Citrobacter youngae ATCC 29220]
          Length = 494

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 192 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 251

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 252 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 310

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R S   +    G+D+A++ ++A + A+A
Sbjct: 311 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNSIPVIAQHTGADSASVIFDAIQAAKA 370

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 371 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTGQNAISQAKL 430

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 431 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 485


>gi|313901969|ref|ZP_07835385.1| signal recognition particle-docking protein FtsY [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467758|gb|EFR63256.1| signal recognition particle-docking protein FtsY [Thermaerobacter
           subterraneus DSM 13965]
          Length = 311

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/294 (45%), Positives = 183/294 (62%), Gaps = 2/294 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           KL  G A T  +L   I  ++    LD+ + EELE +LI +D+GVA  Q+++E L  +  
Sbjct: 5   KLKAGLARTREQLAGRIRAVVQGAALDEALFEELEAVLITADVGVATTQRLLERLRERVR 64

Query: 76  AKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSK 133
           A+ V     V   ++E +  ML  ++ P           VILVVGVNG GKTT +GKL+ 
Sbjct: 65  AEGVRDAAAVPGLLAEEMRGMLEAVAAPPAAPGRGPGPLVILVVGVNGSGKTTTVGKLAA 124

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +    G KV++ A DTFR+AAIDQL+ W  R  AD V    G+D AA+A++A + AQA+ 
Sbjct: 125 RYRQEGWKVVVGAADTFRAAAIDQLERWCQRAGADLVRQHPGADPAAVAFDALQAAQARG 184

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DVL++DTAGRLH    LM  + K  RVL+RLDP APH VL VLDATTGQNAL Q   F 
Sbjct: 185 ADVLLVDTAGRLHTRVNLMEELRKTQRVLQRLDPTAPHEVLLVLDATTGQNALAQARHFT 244

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
              G TG+++TK+DGTARGG ++ I    ++PV ++G GEG +DL PF   +F+
Sbjct: 245 EAVGVTGIVLTKLDGTARGGMVVAIADQLRLPVKWVGTGEGADDLAPFDPGEFT 298


>gi|311696381|gb|ADP99254.1| signal recognition particle-docking protein FtsY [marine bacterium
           HP15]
          Length = 397

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/301 (42%), Positives = 197/301 (65%), Gaps = 8/301 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S   ++ KG   T   L  G++D+ S  +++D+ + EE+E  L+ +D+GV    +I++ 
Sbjct: 93  VSVFERIKKGLGKTRASLTGGLSDMFSLGKKIDEELLEEIETTLLMADVGVTATSEIIDS 152

Query: 70  L---LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           L   L +   KD  ++++ L D    +H +L  ++KP   D    P+VIL+VGVNGVGKT
Sbjct: 153 LTDKLERNQLKDGEALRKALRDE---LHGLLKDVTKPLQIDSGKTPYVILMVGVNGVGKT 209

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+KK  + G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A
Sbjct: 210 TTIGKLTKKFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNKVPVVAQHTGADSASVIFDA 269

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+++ VDV+I DTAGRL N   LM  + K++RV+K+LD  APH V+ VLDA TGQNA
Sbjct: 270 IQSAKSRGVDVVIADTAGRLQNKDNLMQELEKVVRVMKKLDESAPHEVMLVLDAGTGQNA 329

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q ++F    G +G+ +TK+DGTA+GG +  I    ++P+ F+GVGE ++DL  F A+ 
Sbjct: 330 LSQAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRFIGVGEQVDDLRSFDAET 389

Query: 306 F 306
           F
Sbjct: 390 F 390


>gi|123440617|ref|YP_001004611.1| cell division protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087578|emb|CAL10359.1| cell division protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 507

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 188/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 205 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 264

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P VIL+VGVNGVGKTT IGKL
Sbjct: 265 HASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVS-GKNPFVILMVGVNGVGKTTTIGKL 323

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A++ ++A + A+A
Sbjct: 324 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQAAKA 383

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 384 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 443

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 444 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 498


>gi|73667502|ref|YP_303518.1| signal recognition particle-docking protein FtsY [Ehrlichia canis
           str. Jake]
 gi|72394643|gb|AAZ68920.1| signal recognition particle-docking protein FtsY [Ehrlichia canis
           str. Jake]
          Length = 310

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 130/304 (42%), Positives = 200/304 (65%), Gaps = 7/304 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           ++  + KG   TS KL +GI  I SS +++D    EEL++LLI +D+G   A  + ++L 
Sbjct: 9   FLNNIKKGLFKTSSKLSDGIKKIFSSEKKIDQETLEELKELLITADVGYENASLLTQKLA 68

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             ++  +V    V   ++E I  +L+ + KP +   +++PHVI++ G NG GKTT IGKL
Sbjct: 69  EIKF-NEVDYSIVKQKLAESIEDILLQVEKPLS--INNKPHVIMICGTNGNGKTTTIGKL 125

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K  + G KV++AA DTFR+AA +QL +W+ + +   V    G+DAA++AY+A +QA  
Sbjct: 126 AHKFKNEGKKVLVAACDTFRAAATEQLIVWSQKVNFPVVTGNQGADAASIAYQAMQQALN 185

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            +VDVL+IDTAGRLHN+  LM  + K+ R++ + D +APH+V+ +LDATTGQNA+ QVE 
Sbjct: 186 DQVDVLLIDTAGRLHNHKNLMEELAKIKRIIGKHDNNAPHNVILILDATTGQNAIHQVEA 245

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      +GLIMTK+DGTA+GG +I I   +K+ ++ +G+GE +  L+ F AK+F+    
Sbjct: 246 FSQFVNISGLIMTKLDGTAKGGVVIKIAQKYKLSIHAIGIGEHVEQLQDFSAKEFA---I 302

Query: 312 GCLD 315
           G LD
Sbjct: 303 GLLD 306


>gi|253997119|ref|YP_003049183.1| signal recognition particle-docking protein FtsY [Methylotenera
           mobilis JLW8]
 gi|253983798|gb|ACT48656.1| signal recognition particle-docking protein FtsY [Methylotenera
           mobilis JLW8]
          Length = 336

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 123/298 (41%), Positives = 188/298 (63%), Gaps = 5/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G A T  +L   +  I    ++D  V EELE +L+ SD+G+   Q +++++
Sbjct: 35  LSWTARLKQGLAKTRNQLGNQLASIFGGGKIDAEVYEELETILLTSDVGINATQHLLDDI 94

Query: 71  --LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
               KR + D +VQ +   + + +  +L PL +P      H+P +I++ GVNG GKTT I
Sbjct: 95  KGRVKRQSLDDTVQ-LKAALKDALSDLLSPLEQPLATS-KHQPFIIMLAGVNGAGKTTTI 152

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  V++AAGDTFR+AA +QL++W +R +   V ++   D AA+ ++A   
Sbjct: 153 GKLAKQFQSEGKSVLIAAGDTFRAAAREQLQVWGERNNV-HVVAQTSGDPAAVMFDAINS 211

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK +D+++ DTAGRL     LM  I K+ RV+ +  P APH VL VLDA TGQNA+ Q
Sbjct: 212 ARAKNIDIVLADTAGRLPTQMHLMDEIAKVKRVMDKALPGAPHEVLLVLDANTGQNAVSQ 271

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           V++F    G TGL+++K+DGTA+GG +  I     IP+ ++G+GE I+DL PF A +F
Sbjct: 272 VKIFDDALGVTGLVLSKLDGTAKGGVIAAIAQARPIPIRYIGIGEAIDDLRPFNANEF 329


>gi|254243472|ref|ZP_04936794.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           2192]
 gi|126196850|gb|EAZ60913.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           2192]
          Length = 362

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 189/297 (63%), Gaps = 4/297 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L 
Sbjct: 56  FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 114

Query: 72  TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           TKR A K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 115 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 174

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 175 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 234

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 235 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 294

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F
Sbjct: 295 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 351


>gi|301329789|ref|ZP_07222524.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 78-1]
 gi|300844138|gb|EFK71898.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 78-1]
          Length = 497

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  +++P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVNEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488


>gi|323944312|gb|EGB40387.1| signal recognition particle-docking protein FtsY [Escherichia coli
           H120]
          Length = 515

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 213 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 272

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 273 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 331

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 332 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 391

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 392 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 451

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 452 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 506


>gi|188577553|ref|YP_001914482.1| signal recognition particle-docking protein FtsY [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188522005|gb|ACD59950.1| signal recognition particle-docking protein FtsY [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 311

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 119/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98
           +LDD + +E+E  LI +D+G+     ++E L  +  +++ V  Q +   +   +  +L P
Sbjct: 33  KLDDDLLDEIETALITADVGIGATTALIEGLRKRMKSREFVDAQAMFKALRADLIALLQP 92

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP   D + +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL
Sbjct: 93  VSKPLVIDRARKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 152

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + W DR     +     +DAA++A++A + A+A+  DVLI DTAGRLH  + LM  +GK+
Sbjct: 153 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 212

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RVL ++D  APH VL V+D TTGQNA+ Q+  FHA  G TGL++TK+DGTA+GG +  +
Sbjct: 213 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 272

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
                IP+ F G+GE   DL  F
Sbjct: 273 AREFNIPIRFAGIGERPEDLRVF 295


>gi|256025812|ref|ZP_05439677.1| cell division protein FtsY [Escherichia sp. 4_1_40B]
 gi|301645907|ref|ZP_07245821.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 146-1]
 gi|307140147|ref|ZP_07499503.1| cell division protein FtsY [Escherichia coli H736]
 gi|331644164|ref|ZP_08345293.1| cell division protein FtsY [Escherichia coli H736]
 gi|301075896|gb|EFK90702.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 146-1]
 gi|315614733|gb|EFU95373.1| signal recognition particle-docking protein FtsY [Escherichia coli
           3431]
 gi|331036458|gb|EGI08684.1| cell division protein FtsY [Escherichia coli H736]
          Length = 497

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 255 GASRKQLRDAEALYGQLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKL 313

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488


>gi|331659760|ref|ZP_08360698.1| cell division protein FtsY [Escherichia coli TA206]
 gi|331052975|gb|EGI25008.1| cell division protein FtsY [Escherichia coli TA206]
          Length = 498

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|298528315|ref|ZP_07015719.1| signal recognition particle-docking protein FtsY
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511967|gb|EFI35869.1| signal recognition particle-docking protein FtsY
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 435

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/301 (43%), Positives = 188/301 (62%), Gaps = 9/301 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL+ G + T  +L   I  ++SS    D+   EELE++LI SD+G   A ++V++L T  
Sbjct: 140 KLSHGLSKTKAQLSRQIDQLLSSSTSFDEAFWEELEEILIMSDVGHKAATELVQKLRT-- 197

Query: 75  YAKDVSVQRV--LYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              +VS Q V    +  +L+ K L     +P        P VIL++GVNGVGKTT I KL
Sbjct: 198 ---EVSGQSVDDPQEFKQLLGKELAAFFPRPQKRIKPDPPEVILMIGVNGVGKTTTIAKL 254

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G +VM+AAGDTFR+AAI+QL IWA+R  A+F     G+D A++AYEA  +A A
Sbjct: 255 AHRDRMKGRRVMIAAGDTFRAAAIEQLGIWAERADAEFYAKSHGADPASVAYEALDKAVA 314

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVL +DTAGRLH  S LM  + KM  V+++  P +PH  + VLDATTGQNA+ Q E+
Sbjct: 315 EGTDVLYVDTAGRLHTKSDLMQELKKMKSVMQKKRPGSPHRTILVLDATTGQNAMSQTEL 374

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DGTA+GG ++ I + H+IP+ F+G+GE + DL PF  + F+  + 
Sbjct: 375 FAREINIDEIILTKLDGTAKGGVMVAIALQHQIPITFIGLGEKMEDLRPFEPESFARALL 434

Query: 312 G 312
           G
Sbjct: 435 G 435


>gi|157158382|ref|YP_001464929.1| cell division protein FtsY [Escherichia coli E24377A]
 gi|218697147|ref|YP_002404814.1| cell division protein FtsY [Escherichia coli 55989]
 gi|157080412|gb|ABV20120.1| cell division protein FtsY [Escherichia coli E24377A]
 gi|218353879|emb|CAV00274.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein ; conserved hypothetical protein [Escherichia
           coli 55989]
 gi|323182929|gb|EFZ68330.1| signal recognition particle-docking protein FtsY [Escherichia coli
           1357]
          Length = 497

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 374 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488


>gi|258625089|ref|ZP_05720008.1| signal recognition particle-docking protein FtsY [Vibrio mimicus
           VM603]
 gi|258582640|gb|EEW07470.1| signal recognition particle-docking protein FtsY [Vibrio mimicus
           VM603]
          Length = 400

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/295 (41%), Positives = 191/295 (64%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L  
Sbjct: 97  FFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTTKIITNLTA 156

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K   + +     LY +  E + ++L  + +P   +   +P+VIL+VGVNGVGKTT IGKL
Sbjct: 157 KASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETDKKPYVILMVGVNGVGKTTTIGKL 216

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+A
Sbjct: 217 AKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAKA 276

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q ++
Sbjct: 277 RGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKL 336

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 337 FSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 391


>gi|209920923|ref|YP_002295007.1| cell division protein FtsY [Escherichia coli SE11]
 gi|209914182|dbj|BAG79256.1| ABC transporter permease component [Escherichia coli SE11]
 gi|324018641|gb|EGB87860.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 117-3]
          Length = 498

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|15893128|ref|NP_360842.1| cell division protein ftsY [Rickettsia conorii str. Malish 7]
 gi|81527868|sp|Q92GB8|FTSY_RICCN RecName: Full=Cell division protein ftsY homolog
 gi|15620335|gb|AAL03743.1| cell division protein ftsY [Rickettsia conorii str. Malish 7]
          Length = 303

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 133/303 (43%), Positives = 193/303 (63%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD G  EELE+LLI SD+ V V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAGTLEELEELLISSDMSVLVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L   + PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAKLIEQQLSKSAIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AA++QL  WADR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LASMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HSVL V+DA TGQN   QV
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  
Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARN 299

Query: 310 ITG 312
           + G
Sbjct: 300 LVG 302


>gi|323188945|gb|EFZ74229.1| signal recognition particle-docking protein FtsY [Escherichia coli
           RN587/1]
          Length = 498

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|320194034|gb|EFW68667.1| cell division protein FtsY [Escherichia coli WV_060327]
          Length = 498

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|325925082|ref|ZP_08186502.1| cell division protein FtsY (SRP receptor) [Xanthomonas perforans
           91-118]
 gi|325544498|gb|EGD15861.1| cell division protein FtsY (SRP receptor) [Xanthomonas perforans
           91-118]
          Length = 551

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 120/264 (45%), Positives = 173/264 (65%), Gaps = 3/264 (1%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLM 97
           +LDD + +E+E  LI +D+G+     +++ L  +  +++    + L+    ++LI  +L 
Sbjct: 273 KLDDDLLDEIETALITADVGIGATTALIDGLRKRMKSREFVDAQALFKALRADLIA-LLQ 331

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+SKP   D S +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ Q
Sbjct: 332 PVSKPLVIDRSLKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQ 391

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+ W DR     +     +DAA++A++A + A+A+  DVLI DTAGRLH  + LM  +GK
Sbjct: 392 LQAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGK 451

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RVL ++D  APH VL V+D TTGQNA+ Q+  FHA  G TGL++TK+DGTA+GG +  
Sbjct: 452 IRRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVLTKLDGTAKGGVVFA 511

Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301
           +     IP+ F G+GE   DL  F
Sbjct: 512 LAREFNIPIRFAGIGERPEDLRVF 535


>gi|238763644|ref|ZP_04624604.1| Cell division protein ftsY [Yersinia kristensenii ATCC 33638]
 gi|238698122|gb|EEP90879.1| Cell division protein ftsY [Yersinia kristensenii ATCC 33638]
          Length = 502

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 200 FFARLKRSLIKTKQNLGSGFMGLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 259

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P VIL+VGVNGVGKTT IGKL
Sbjct: 260 HASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVS-GKNPFVILMVGVNGVGKTTTIGKL 318

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A++ ++A + A+A
Sbjct: 319 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQAAKA 378

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 379 RGIDVLLADTAGRLQNKSHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 438

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 439 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 493


>gi|306816192|ref|ZP_07450330.1| cell division protein FtsY [Escherichia coli NC101]
 gi|305850588|gb|EFM51045.1| cell division protein FtsY [Escherichia coli NC101]
          Length = 498

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|163748790|ref|ZP_02156042.1| cell division protein FtsY [Shewanella benthica KT99]
 gi|161331564|gb|EDQ02369.1| cell division protein FtsY [Shewanella benthica KT99]
          Length = 456

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 188/295 (63%), Gaps = 1/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ L  
Sbjct: 148 FFARLKRGLKRTSENIGSGFIGLFKGKKIDDDLFEELEEQLLIADVGVETTTRLIDSLTE 207

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K +     LY++  E + K L P+S P   + +  P VIL+VGVNGVGKTT IGKL
Sbjct: 208 QASRKQLKDGEALYELLREEMQKTLEPVSIPLVPESADGPFVILMVGVNGVGKTTTIGKL 267

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + A+A
Sbjct: 268 AKQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVLFDALQAARA 327

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N   LM  + K++RV+K+LD +APH V+  LDA TGQNA+ Q E+
Sbjct: 328 RNIDVLIADTAGRLQNKVHLMDELKKIVRVMKKLDENAPHEVMLTLDAGTGQNAISQAEL 387

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F    G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  F AKDF
Sbjct: 388 FKKAVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDF 442


>gi|58582766|ref|YP_201782.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427360|gb|AAW76397.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 601

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 119/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98
           +LDD + +E+E  LI +D+G+     ++E L  +  +++ V  Q +   +   +  +L P
Sbjct: 323 KLDDDLLDEIETALITADVGIGATTALIEGLRKRMKSREFVDAQAMFKALRADLIALLQP 382

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP   D + +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL
Sbjct: 383 VSKPLVIDRARKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 442

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + W DR     +     +DAA++A++A + A+A+  DVLI DTAGRLH  + LM  +GK+
Sbjct: 443 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 502

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RVL ++D  APH VL V+D TTGQNA+ Q+  FHA  G TGL++TK+DGTA+GG +  +
Sbjct: 503 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 562

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
                IP+ F G+GE   DL  F
Sbjct: 563 AREFNIPIRFAGIGERPEDLRVF 585


>gi|325922810|ref|ZP_08184538.1| cell division protein FtsY [Xanthomonas gardneri ATCC 19865]
 gi|325546697|gb|EGD17823.1| cell division protein FtsY [Xanthomonas gardneri ATCC 19865]
          Length = 569

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 121/263 (46%), Positives = 171/263 (65%), Gaps = 1/263 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98
           +LDD + +E+E  LI +D+G+     +VE L  +  +++ V  Q +   +   +  +L P
Sbjct: 291 KLDDDLLDEIETALITADVGIGATTALVEGLRKRMKSREFVDAQAMFKALRADLIALLQP 350

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP   D S +P VIL VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL
Sbjct: 351 VSKPLVIDRSVKPFVILTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 410

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + W DR     +     +DAA++A++A + A+A+  +VLI DTAGRLH  + LM  +GK+
Sbjct: 411 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTEVLIADTAGRLHTQTGLMNELGKI 470

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RVL ++D  APH VL V+D TTGQNA+ Q+  FHA  G TGL++TK+DGTA+GG +  +
Sbjct: 471 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 530

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
                IP+ F G+GE   DL  F
Sbjct: 531 AREFNIPIRFAGIGERPEDLRVF 553


>gi|325915143|ref|ZP_08177469.1| signal recognition particle-docking protein FtsY [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325538665|gb|EGD10335.1| signal recognition particle-docking protein FtsY [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 547

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 119/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98
           +LDD + +E+E  LI +D+G+     ++E L  +  +++ V  Q +   +   +  +L P
Sbjct: 269 KLDDDLLDEIETALITADVGIGATTALIEGLRKRMKSREFVDAQAMFKALRADLIALLQP 328

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP   D S +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL
Sbjct: 329 VSKPLVIDRSVKPFVVLTVGVNGVGKTTTIGKLAKRFKDDGNSLMLAAGDTFRAAAVAQL 388

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + W DR     +     +DAA++A++A + A+A+  D+LI DTAGRLH  + LM  +GK+
Sbjct: 389 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDILIADTAGRLHTQTGLMNELGKI 448

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RVL ++D  APH VL V+D TTGQNA+ Q+  FHA  G TGL++TK+DGTA+GG +  +
Sbjct: 449 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 508

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
                IP+ F G+GE   DL  F
Sbjct: 509 AREFNIPIRFAGIGERPEDLRVF 531


>gi|238793545|ref|ZP_04637169.1| Cell division protein ftsY [Yersinia intermedia ATCC 29909]
 gi|238727135|gb|EEQ18665.1| Cell division protein ftsY [Yersinia intermedia ATCC 29909]
          Length = 505

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 188/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 203 FFARLKRSLLKTKQNLGSGFLGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 262

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P VIL+VGVNGVGKTT IGKL
Sbjct: 263 HASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVS-GKNPFVILMVGVNGVGKTTTIGKL 321

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A++ ++A + A+A
Sbjct: 322 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQAAKA 381

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 382 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 441

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 442 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 496


>gi|84624642|ref|YP_452014.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84368582|dbj|BAE69740.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 601

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 119/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98
           +LDD + +E+E  LI +D+G+     ++E L  +  +++ V  Q +   +   +  +L P
Sbjct: 323 KLDDDLLDEIETALITADVGIGATTALIEGLRKRMKSREFVDAQAMFKALRADLIALLQP 382

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP   D + +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL
Sbjct: 383 VSKPLVIDRARKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 442

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + W DR     +     +DAA++A++A + A+A+  DVLI DTAGRLH  + LM  +GK+
Sbjct: 443 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 502

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RVL ++D  APH VL V+D TTGQNA+ Q+  FHA  G TGL++TK+DGTA+GG +  +
Sbjct: 503 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 562

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
                IP+ F G+GE   DL  F
Sbjct: 563 AREFNIPIRFAGIGERPEDLRVF 585


>gi|324116338|gb|EGC10257.1| signal recognition particle-docking protein FtsY [Escherichia coli
           E1167]
          Length = 515

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 213 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 272

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 273 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 331

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 332 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 391

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 392 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 451

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 452 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 506


>gi|320181957|gb|EFW56863.1| cell division protein FtsY [Shigella boydii ATCC 9905]
          Length = 498

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|323174103|gb|EFZ59731.1| signal recognition particle-docking protein FtsY [Escherichia coli
           LT-68]
          Length = 426

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 124 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 183

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 184 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 242

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W+ R +   +    G+D+A++ ++A + A+A
Sbjct: 243 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWSQRNNIPVIAQHTGADSASVIFDAIQAAKA 302

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 303 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 362

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 363 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 417


>gi|194431246|ref|ZP_03063539.1| cell division protein FtsY [Shigella dysenteriae 1012]
 gi|194420701|gb|EDX36777.1| cell division protein FtsY [Shigella dysenteriae 1012]
 gi|332085988|gb|EGI91152.1| signal recognition particle-docking protein FtsY [Shigella
           dysenteriae 155-74]
          Length = 497

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488


>gi|332085341|gb|EGI90513.1| signal recognition particle-docking protein FtsY [Shigella boydii
           5216-82]
          Length = 497

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488


>gi|331649271|ref|ZP_08350357.1| cell division protein FtsY [Escherichia coli M605]
 gi|330909505|gb|EGH38019.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Escherichia coli AA86]
 gi|331041769|gb|EGI13913.1| cell division protein FtsY [Escherichia coli M605]
          Length = 498

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|297517807|ref|ZP_06936193.1| cell division protein FtsY [Escherichia coli OP50]
          Length = 336

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 34  FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 93

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 94  GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 152

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 153 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 212

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 213 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 272

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 273 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 327


>gi|34581201|ref|ZP_00142681.1| cell division protein ftsY [Rickettsia sibirica 246]
 gi|28262586|gb|EAA26090.1| cell division protein ftsY [Rickettsia sibirica 246]
          Length = 303

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 133/303 (43%), Positives = 193/303 (63%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD G  EELE+LLI SD+ V V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAGTLEELEELLISSDMSVLVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L   + PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAKLIEQQLSKSAIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AA++QL  WADR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYHGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HSVL V+DA TGQN   QV
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  
Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARN 299

Query: 310 ITG 312
           + G
Sbjct: 300 LVG 302


>gi|320661534|gb|EFX28949.1| signal recognition particle-docking protein FtsY [Escherichia coli
           O55:H7 str. USDA 5905]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|153948996|ref|YP_001399236.1| cell division protein FtsY [Yersinia pseudotuberculosis IP 31758]
 gi|152960491|gb|ABS47952.1| cell division protein FtsY [Yersinia pseudotuberculosis IP 31758]
          Length = 541

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 239 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 298

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 299 HASRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 357

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 358 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 417

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 418 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 477

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 478 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 532


>gi|312972271|ref|ZP_07786445.1| signal recognition particle-docking protein FtsY [Escherichia coli
           1827-70]
 gi|310334648|gb|EFQ00853.1| signal recognition particle-docking protein FtsY [Escherichia coli
           1827-70]
          Length = 458

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 156 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 215

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 216 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 274

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 275 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 334

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 335 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 394

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 395 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 449


>gi|215488739|ref|YP_002331170.1| cell division protein FtsY [Escherichia coli O127:H6 str. E2348/69]
 gi|218691749|ref|YP_002399961.1| cell division protein FtsY [Escherichia coli ED1a]
 gi|312968224|ref|ZP_07782434.1| signal recognition particle-docking protein FtsY [Escherichia coli
           2362-75]
 gi|215266811|emb|CAS11252.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218429313|emb|CAR10272.2| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein ; conserved hypothetical protein [Escherichia
           coli ED1a]
 gi|222035170|emb|CAP77915.1| Cell division protein ftsY [Escherichia coli LF82]
 gi|312287049|gb|EFR14959.1| signal recognition particle-docking protein FtsY [Escherichia coli
           2362-75]
 gi|312948017|gb|ADR28844.1| cell division protein FtsY [Escherichia coli O83:H1 str. NRG 857C]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|15803976|ref|NP_290012.1| cell division protein FtsY [Escherichia coli O157:H7 EDL933]
 gi|15833567|ref|NP_312340.1| cell division protein FtsY [Escherichia coli O157:H7 str. Sakai]
 gi|168747042|ref|ZP_02772064.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4113]
 gi|168753232|ref|ZP_02778239.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4401]
 gi|168759502|ref|ZP_02784509.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4501]
 gi|168765827|ref|ZP_02790834.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4486]
 gi|168772627|ref|ZP_02797634.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4196]
 gi|168779563|ref|ZP_02804570.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4076]
 gi|168785285|ref|ZP_02810292.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC869]
 gi|168797250|ref|ZP_02822257.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC508]
 gi|195934958|ref|ZP_03080340.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4024]
 gi|208809270|ref|ZP_03251607.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4206]
 gi|208813507|ref|ZP_03254836.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4045]
 gi|208819501|ref|ZP_03259821.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4042]
 gi|209398368|ref|YP_002272908.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4115]
 gi|217326123|ref|ZP_03442207.1| cell division protein FtsY [Escherichia coli O157:H7 str. TW14588]
 gi|254795384|ref|YP_003080221.1| cell division protein FtsY [Escherichia coli O157:H7 str. TW14359]
 gi|261224747|ref|ZP_05939028.1| membrane-binding signal recognition particle (SRP) receptor
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254358|ref|ZP_05946891.1| membrane-binding signal recognition particle (SRP) receptor
           [Escherichia coli O157:H7 str. FRIK966]
 gi|12518120|gb|AAG58573.1|AE005569_13 cell division membrane protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13363787|dbj|BAB37736.1| cell division membrane protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|187771445|gb|EDU35289.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4196]
 gi|188018305|gb|EDU56427.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4113]
 gi|189002631|gb|EDU71617.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4076]
 gi|189358908|gb|EDU77327.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4401]
 gi|189364762|gb|EDU83181.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4486]
 gi|189369833|gb|EDU88249.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4501]
 gi|189374442|gb|EDU92858.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC869]
 gi|189380153|gb|EDU98569.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC508]
 gi|208729071|gb|EDZ78672.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4206]
 gi|208734784|gb|EDZ83471.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4045]
 gi|208739624|gb|EDZ87306.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4042]
 gi|209159768|gb|ACI37201.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4115]
 gi|209756008|gb|ACI76316.1| cell division membrane protein [Escherichia coli]
 gi|209756010|gb|ACI76317.1| cell division membrane protein [Escherichia coli]
 gi|209756012|gb|ACI76318.1| cell division membrane protein [Escherichia coli]
 gi|209756014|gb|ACI76319.1| cell division membrane protein [Escherichia coli]
 gi|209756016|gb|ACI76320.1| cell division membrane protein [Escherichia coli]
 gi|217322344|gb|EEC30768.1| cell division protein FtsY [Escherichia coli O157:H7 str. TW14588]
 gi|254594784|gb|ACT74145.1| membrane-binding signal recognition particle (SRP) receptor
           [Escherichia coli O157:H7 str. TW14359]
 gi|320191518|gb|EFW66168.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC1212]
 gi|320639748|gb|EFX09342.1| signal recognition particle-docking protein FtsY [Escherichia coli
           O157:H7 str. G5101]
 gi|320645247|gb|EFX14263.1| signal recognition particle-docking protein FtsY [Escherichia coli
           O157:H- str. 493-89]
 gi|320650558|gb|EFX19024.1| signal recognition particle-docking protein FtsY [Escherichia coli
           O157:H- str. H 2687]
 gi|320655751|gb|EFX23674.1| signal recognition particle-docking protein FtsY [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320666557|gb|EFX33540.1| signal recognition particle-docking protein FtsY [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326337566|gb|EGD61401.1| cell division protein FtsY [Escherichia coli O157:H7 str. 1044]
 gi|326344683|gb|EGD68432.1| cell division protein FtsY [Escherichia coli O157:H7 str. 1125]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|191169497|ref|ZP_03031229.1| cell division protein FtsY [Escherichia coli B7A]
 gi|193061759|ref|ZP_03042856.1| cell division protein FtsY [Escherichia coli E22]
 gi|218556015|ref|YP_002388928.1| cell division protein FtsY [Escherichia coli IAI1]
 gi|256020812|ref|ZP_05434677.1| cell division protein FtsY [Shigella sp. D9]
 gi|260846248|ref|YP_003224026.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/hypothetical protein FtsY [Escherichia coli
           O103:H2 str. 12009]
 gi|300907385|ref|ZP_07125033.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 84-1]
 gi|300926838|ref|ZP_07142606.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 182-1]
 gi|301305997|ref|ZP_07212078.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 124-1]
 gi|307311869|ref|ZP_07591507.1| signal recognition particle-docking protein FtsY [Escherichia coli
           W]
 gi|332282019|ref|ZP_08394432.1| cell division protein ftsY [Shigella sp. D9]
 gi|190900458|gb|EDV60275.1| cell division protein FtsY [Escherichia coli B7A]
 gi|192932549|gb|EDV85146.1| cell division protein FtsY [Escherichia coli E22]
 gi|218362783|emb|CAR00409.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein ; conserved hypothetical protein [Escherichia
           coli IAI1]
 gi|257761395|dbj|BAI32892.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein FtsY [Escherichia coli O103:H2
           str. 12009]
 gi|300400894|gb|EFJ84432.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 84-1]
 gi|300417188|gb|EFK00499.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 182-1]
 gi|300838780|gb|EFK66540.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 124-1]
 gi|306908013|gb|EFN38513.1| signal recognition particle-docking protein FtsY [Escherichia coli
           W]
 gi|315062743|gb|ADT77070.1| fused signal recognition particle (SRP) receptor: membrane binding
           protein/conserved protein [Escherichia coli W]
 gi|315256062|gb|EFU36030.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 85-1]
 gi|320199641|gb|EFW74231.1| cell division protein FtsY [Escherichia coli EC4100B]
 gi|323376669|gb|ADX48937.1| signal recognition particle-docking protein FtsY [Escherichia coli
           KO11]
 gi|332104371|gb|EGJ07717.1| cell division protein ftsY [Shigella sp. D9]
          Length = 497

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488


>gi|331679532|ref|ZP_08380202.1| cell division protein FtsY [Escherichia coli H591]
 gi|331072704|gb|EGI44029.1| cell division protein FtsY [Escherichia coli H591]
          Length = 527

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 225 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 284

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 285 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 343

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 344 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 403

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 404 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 463

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 464 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 518


>gi|293453769|ref|ZP_06664188.1| cell division protein FtsY [Escherichia coli B088]
 gi|300815331|ref|ZP_07095556.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 107-1]
 gi|309794744|ref|ZP_07689166.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 145-7]
 gi|331670290|ref|ZP_08371129.1| cell division protein FtsY [Escherichia coli TA271]
 gi|291321895|gb|EFE61326.1| cell division protein FtsY [Escherichia coli B088]
 gi|300532223|gb|EFK53285.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 107-1]
 gi|308121794|gb|EFO59056.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 145-7]
 gi|331062352|gb|EGI34272.1| cell division protein FtsY [Escherichia coli TA271]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|326802525|ref|YP_004320344.1| signal recognition particle-docking protein FtsY [Sphingobacterium
           sp. 21]
 gi|326553289|gb|ADZ81674.1| signal recognition particle-docking protein FtsY [Sphingobacterium
           sp. 21]
          Length = 320

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 132/296 (44%), Positives = 190/296 (64%), Gaps = 7/296 (2%)

Query: 17  LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T       IT  ++    +D+ V ++LE++L+ SD+GV    KI+E +   R 
Sbjct: 20  LDKGLEKTKEGFFTKITKAVVGKSTVDEEVLDDLEEVLVTSDVGVTTTLKIIERI-EDRV 78

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPL-SKPF-NWDF-SHRPHVILVVGVNGVGKTTVIGK 130
           A+D  ++   +   + E I ++L    S  F N+++ +H+P+VI+VVGVNGVGKTT IGK
Sbjct: 79  ARDKYINTSELNGILREEIQELLAENNSNDFENFEYGNHKPYVIMVVGVNGVGKTTTIGK 138

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+  AG KV+L A DTFR+AA+DQ+K+W +R     V   +GSD A++A++  + A 
Sbjct: 139 LAHKLKQAGNKVVLGAADTFRAAAVDQIKLWGERVGVRVVAQAMGSDPASVAFDTIQSAV 198

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A + DV IIDTAGRLHN   LM  + K+  V+K++ P APH +L VLDA+TGQNA+ Q +
Sbjct: 199 ANQEDVAIIDTAGRLHNKLALMNELTKIKNVMKKVVPGAPHEILLVLDASTGQNAIEQCK 258

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F        L +TK+DGTA+GG +I I    KIPV ++GVGEGINDL+ F  K+F
Sbjct: 259 QFTQATDVNALALTKLDGTAKGGVVIGISDQFKIPVKYIGVGEGINDLQLFNKKEF 314


>gi|331655047|ref|ZP_08356046.1| cell division protein FtsY [Escherichia coli M718]
 gi|331047062|gb|EGI19140.1| cell division protein FtsY [Escherichia coli M718]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|293416868|ref|ZP_06659505.1| cell division protein FtsY [Escherichia coli B185]
 gi|291431444|gb|EFF04429.1| cell division protein FtsY [Escherichia coli B185]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|157162941|ref|YP_001460259.1| cell division protein FtsY [Escherichia coli HS]
 gi|170018304|ref|YP_001723258.1| cell division protein FtsY [Escherichia coli ATCC 8739]
 gi|157068621|gb|ABV07876.1| cell division protein FtsY [Escherichia coli HS]
 gi|169753232|gb|ACA75931.1| signal recognition particle-docking protein FtsY [Escherichia coli
           ATCC 8739]
 gi|323939318|gb|EGB35529.1| signal recognition particle-docking protein FtsY [Escherichia coli
           E482]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|226939167|ref|YP_002794238.1| FtsY [Laribacter hongkongensis HLHK9]
 gi|226714091|gb|ACO73229.1| FtsY [Laribacter hongkongensis HLHK9]
          Length = 400

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 191/307 (62%), Gaps = 3/307 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++++  A    SW  +L  G + T  KL + +  +    ++D+ + +ELE +L+ SD+GV
Sbjct: 90  VASEAAAPRKQSWSERLKAGLSKTRDKLGKQLAGLFGGGQIDEDLYDELETILLTSDMGV 149

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           A  + ++E++  +   K +     L D + E +  ++ PL KP N D S  P VI++ GV
Sbjct: 150 AATRHLLEDVRRRVSLKGLKDASQLKDALKESLMDLIGPLEKPLNLDRSG-PLVIMMAGV 208

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+K        V+LAAGDTFR+AA +QL  W  R     V S+ G DAA
Sbjct: 209 NGAGKTTSIGKLAKYFQGHRKSVLLAAGDTFRAAAREQLAEWGARNQVT-VISQQGGDAA 267

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A + AQA+K+D+++ DTAGRL     LM  I K+ RV+ +  P APH +L VLDA
Sbjct: 268 AVCFDAVQAAQARKIDIVLADTAGRLPTQLHLMEEIRKVKRVISKALPQAPHEILLVLDA 327

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNAL QV+ F    G TGLI+TK+DGTA+GG +  I     +P+YF+GVGE ++DL 
Sbjct: 328 NTGQNALAQVKAFDDALGLTGLILTKLDGTAKGGVIAAIARERPVPMYFVGVGETLDDLR 387

Query: 300 PFVAKDF 306
           PF A+++
Sbjct: 388 PFSAREY 394


>gi|188492944|ref|ZP_03000214.1| cell division protein FtsY [Escherichia coli 53638]
 gi|194435805|ref|ZP_03067908.1| cell division protein FtsY [Escherichia coli 101-1]
 gi|254163388|ref|YP_003046496.1| cell division protein FtsY [Escherichia coli B str. REL606]
 gi|300930995|ref|ZP_07146353.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 187-1]
 gi|188488143|gb|EDU63246.1| cell division protein FtsY [Escherichia coli 53638]
 gi|194425348|gb|EDX41332.1| cell division protein FtsY [Escherichia coli 101-1]
 gi|242378985|emb|CAQ33783.1| SRP receptor, subunit of Signal Recognition Particle Protein
           Translocation System [Escherichia coli BL21(DE3)]
 gi|253975289|gb|ACT40960.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved hypothetical protein [Escherichia coli
           B str. REL606]
 gi|253979445|gb|ACT45115.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Escherichia coli BL21(DE3)]
 gi|300461173|gb|EFK24666.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 187-1]
 gi|323959684|gb|EGB55335.1| signal recognition particle-docking protein FtsY [Escherichia coli
           H489]
 gi|323970062|gb|EGB65337.1| signal recognition particle-docking protein FtsY [Escherichia coli
           TA007]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|218702209|ref|YP_002409838.1| cell division protein FtsY [Escherichia coli IAI39]
 gi|218372195|emb|CAR20057.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein ; conserved hypothetical protein [Escherichia
           coli IAI39]
          Length = 495

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 193 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 252

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 253 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 311

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 312 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 371

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 372 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 431

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 432 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 486


>gi|193068822|ref|ZP_03049782.1| cell division protein FtsY [Escherichia coli E110019]
 gi|260857570|ref|YP_003231461.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein FtsY [Escherichia coli O26:H11
           str. 11368]
 gi|260870189|ref|YP_003236591.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/hypothetical protein FtsY [Escherichia coli
           O111:H- str. 11128]
 gi|192957898|gb|EDV88341.1| cell division protein FtsY [Escherichia coli E110019]
 gi|257756219|dbj|BAI27721.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein FtsY [Escherichia coli O26:H11
           str. 11368]
 gi|257766545|dbj|BAI38040.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein FtsY [Escherichia coli O111:H-
           str. 11128]
 gi|323179009|gb|EFZ64583.1| signal recognition particle-docking protein FtsY [Escherichia coli
           1180]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|324009352|gb|EGB78571.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 57-2]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|281602812|gb|ADA75796.1| Cell division membrane protein [Shigella flexneri 2002017]
 gi|332749436|gb|EGJ79853.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           K-671]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|229525040|ref|ZP_04414445.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           bv. albensis VL426]
 gi|229338621|gb|EEO03638.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           bv. albensis VL426]
          Length = 401

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 121/296 (40%), Positives = 191/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+     I+  L 
Sbjct: 97  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSNIIANLT 156

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   +   +P+VIL+VGVNGVGKTT IGK
Sbjct: 157 AKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETEKKPYVILMVGVNGVGKTTTIGK 216

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 217 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 276

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 277 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 336

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 337 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 392


>gi|170682136|ref|YP_001745713.1| cell division protein FtsY [Escherichia coli SMS-3-5]
 gi|170519854|gb|ACB18032.1| cell division protein FtsY [Escherichia coli SMS-3-5]
          Length = 512

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 210 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 269

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 270 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 328

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 329 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 388

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 389 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 448

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 449 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 503


>gi|170766837|ref|ZP_02901290.1| cell division protein FtsY [Escherichia albertii TW07627]
 gi|170124275|gb|EDS93206.1| cell division protein FtsY [Escherichia albertii TW07627]
          Length = 504

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 202 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 261

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 262 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKL 320

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 321 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 380

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 381 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 440

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 441 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 495


>gi|300822730|ref|ZP_07102867.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 119-7]
 gi|300524730|gb|EFK45799.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 119-7]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|320175705|gb|EFW50793.1| cell division protein FtsY [Shigella dysenteriae CDC 74-1112]
          Length = 500

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 198 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 257

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +    VLY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 258 GASRKQLRDAEVLYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 316

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 317 ARQFELQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 376

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 377 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 436

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 437 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 491


>gi|301018551|ref|ZP_07182929.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 69-1]
 gi|300399670|gb|EFJ83208.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 69-1]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|110643704|ref|YP_671434.1| cell division protein FtsY [Escherichia coli 536]
 gi|191170595|ref|ZP_03032148.1| cell division protein FtsY [Escherichia coli F11]
 gi|300987363|ref|ZP_07178171.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 200-1]
 gi|110345296|gb|ABG71533.1| cell division protein FtsY [Escherichia coli 536]
 gi|190909403|gb|EDV68989.1| cell division protein FtsY [Escherichia coli F11]
 gi|300306231|gb|EFJ60751.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 200-1]
 gi|324014562|gb|EGB83781.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 60-1]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|254038632|ref|ZP_04872688.1| cell division protein FtsY [Escherichia sp. 1_1_43]
 gi|226839138|gb|EEH71161.1| cell division protein FtsY [Escherichia sp. 1_1_43]
 gi|309703870|emb|CBJ03211.1| cell division protein [Escherichia coli ETEC H10407]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|167627247|ref|YP_001677747.1| signal recognition particle-docking protein FtsY [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597248|gb|ABZ87246.1| signal recognition particle-docking protein FtsY [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 333

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/297 (41%), Positives = 198/297 (66%), Gaps = 2/297 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ DD + E++E  L+ SD+GV    +IVE L  K 
Sbjct: 30  RLQSGLSKTASKFGSGLSTILMGQKVVDDELLEDIEMQLLTSDVGVEATDEIVEYLRGKV 89

Query: 75  YAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              ++ +V ++   + + + ++++P  KP   +  + P+VIL+VGVNGVGKTT IGKL+K
Sbjct: 90  ARNELQTVDKLNEIIQDKLTEIILPCQKPLQINHENTPYVILIVGVNGVGKTTTIGKLTK 149

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+   G  V+LAAGDTFR+AA++QL+ W DR +   V  + G+D+A++ Y+A   A+++ 
Sbjct: 150 KLQSEGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQKEGADSASVIYDAISSAKSRG 209

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+I DTAGRLHN   LM  + K+++V+K++D  APH  + V+DATTG NAL Q E F+
Sbjct: 210 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKVDDSAPHETMLVVDATTGGNALSQAEAFN 269

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F AK+F+  +
Sbjct: 270 EIVNLTGITITKLDGTAKGGIVFSIAKKMGLPLRFIGVGEKIDDLQVFNAKNFTKAL 326


>gi|331665073|ref|ZP_08365974.1| cell division protein FtsY [Escherichia coli TA143]
 gi|331057583|gb|EGI29569.1| cell division protein FtsY [Escherichia coli TA143]
          Length = 498

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|167468884|ref|ZP_02333588.1| cell division protein [Yersinia pestis FV-1]
          Length = 589

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 287 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 346

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 347 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 405

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 406 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 465

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 466 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 525

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 526 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 580


>gi|333012439|gb|EGK31820.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           K-304]
          Length = 516

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 214 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 273

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 274 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGVNGVGKTTTIGKL 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 333 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 393 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 453 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 507


>gi|325499013|gb|EGC96872.1| cell division protein FtsY [Escherichia fergusonii ECD227]
          Length = 512

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 210 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 269

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 270 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 328

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 329 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 388

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 389 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 448

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 449 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 503


>gi|331685110|ref|ZP_08385696.1| cell division protein FtsY [Escherichia coli H299]
 gi|331077481|gb|EGI48693.1| cell division protein FtsY [Escherichia coli H299]
          Length = 498

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|218550726|ref|YP_002384517.1| cell division protein FtsY [Escherichia fergusonii ATCC 35469]
 gi|218358267|emb|CAQ90914.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein ; conserved hypothetical protein [Escherichia
           fergusonii ATCC 35469]
          Length = 512

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 210 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 269

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 270 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 328

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 329 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 388

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 389 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 448

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 449 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 503


>gi|197249122|ref|YP_002148494.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197212825|gb|ACH50222.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 491

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|323974895|gb|EGB70006.1| signal recognition particle-docking protein FtsY [Escherichia coli
           TW10509]
          Length = 512

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 210 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 269

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 270 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 328

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 329 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 388

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 389 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 448

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 449 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 503


>gi|82778728|ref|YP_405077.1| cell division protein FtsY [Shigella dysenteriae Sd197]
 gi|309785785|ref|ZP_07680416.1| signal recognition particle-docking protein FtsY [Shigella
           dysenteriae 1617]
 gi|81242876|gb|ABB63586.1| cell division membrane protein [Shigella dysenteriae Sd197]
 gi|308926905|gb|EFP72381.1| signal recognition particle-docking protein FtsY [Shigella
           dysenteriae 1617]
          Length = 498

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|16131336|ref|NP_417921.1| Signal Recognition Particle (SRP) receptor [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89110548|ref|AP_004328.1| fused Signal Recognition Particle (SRP) receptor [Escherichia coli
           str. K-12 substr. W3110]
 gi|170082978|ref|YP_001732298.1| fused Signal recognition particle (SRP) receptor: membrane binding
           protein; protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238902555|ref|YP_002928351.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/hypothetical protein [Escherichia coli BW2952]
 gi|253771707|ref|YP_003034538.1| cell division protein FtsY [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|300946787|ref|ZP_07161031.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 116-1]
 gi|300956799|ref|ZP_07169066.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 175-1]
 gi|301021814|ref|ZP_07185778.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 196-1]
 gi|120576|sp|P10121|FTSY_ECOLI RecName: Full=Cell division protein ftsY
 gi|41498|emb|CAA27984.1| unnamed protein product [Escherichia coli K-12]
 gi|466600|gb|AAB18439.1| CG Site No. 18295 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789874|gb|AAC76489.1| Signal Recognition Particle (SRP) receptor [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85676579|dbj|BAE77829.1| fused Signal Recognition Particle (SRP) receptor [Escherichia coli
           str. K12 substr. W3110]
 gi|169890813|gb|ACB04520.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein; conserved protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|238861253|gb|ACR63251.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Escherichia coli BW2952]
 gi|253322751|gb|ACT27353.1| signal recognition particle-docking protein FtsY [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260447520|gb|ACX37942.1| signal recognition particle-docking protein FtsY [Escherichia coli
           DH1]
 gi|299881447|gb|EFI89658.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 196-1]
 gi|300316438|gb|EFJ66222.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 175-1]
 gi|300453544|gb|EFK17164.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 116-1]
 gi|315138038|dbj|BAJ45197.1| cell division protein FtsY [Escherichia coli DH1]
          Length = 497

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKL 313

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488


>gi|300917202|ref|ZP_07133884.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 115-1]
 gi|300415541|gb|EFJ98851.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 115-1]
          Length = 497

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488


>gi|262363544|gb|ACY60265.1| cell division protein [Yersinia pestis D106004]
          Length = 544

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 242 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 301

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 302 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 360

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 361 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 420

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 421 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 480

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 481 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 535


>gi|229900065|ref|ZP_04515202.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229686845|gb|EEO78924.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis biovar Orientalis str. India 195]
          Length = 556

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 254 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 313

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 314 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 372

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 373 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 432

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 433 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 492

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 493 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 547


>gi|167401838|ref|ZP_02307326.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167048731|gb|EDR60139.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str.
           UG05-0454]
          Length = 562

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 260 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 319

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 320 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 378

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 379 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 438

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 439 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 498

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 499 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 553


>gi|167420847|ref|ZP_02312600.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|166960976|gb|EDR56997.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|320013587|gb|ADV97158.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 550

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 248 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 307

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 308 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 366

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 367 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 426

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 427 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 486

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 487 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 541


>gi|165926241|ref|ZP_02222073.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165921765|gb|EDR38962.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str.
           F1991016]
          Length = 568

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 266 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 325

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 326 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 384

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 385 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 444

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 445 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 504

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 505 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 559


>gi|145600681|ref|YP_001164757.1| cell division protein [Yersinia pestis Pestoides F]
 gi|153997129|ref|ZP_02022262.1| cell division protein [Yersinia pestis CA88-4125]
 gi|145212377|gb|ABP41784.1| signal recognition particle-docking protein FtsY [Yersinia pestis
           Pestoides F]
 gi|149289435|gb|EDM39513.1| cell division protein [Yersinia pestis CA88-4125]
          Length = 559

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 257 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 316

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 317 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 375

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 376 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 435

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 436 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 495

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 496 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 550


>gi|108810316|ref|YP_646083.1| cell division protein [Yersinia pestis Nepal516]
 gi|229900489|ref|ZP_04515618.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis Nepal516]
 gi|108773964|gb|ABG16483.1| signal recognition particle-docking protein FtsY [Yersinia pestis
           Nepal516]
 gi|229682508|gb|EEO78595.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis Nepal516]
          Length = 535

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 233 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 292

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 293 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 351

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 352 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 411

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 412 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 471

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 472 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 526


>gi|45442987|ref|NP_994526.1| cell division protein [Yersinia pestis biovar Microtus str. 91001]
 gi|45437854|gb|AAS63403.1| cell division protein [Yersinia pestis biovar Microtus str. 91001]
          Length = 547

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 245 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 304

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 305 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 363

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 364 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 423

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 424 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 483

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 484 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 538


>gi|218930816|ref|YP_002348691.1| cell division protein [Yersinia pestis CO92]
 gi|229837142|ref|ZP_04457307.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis Pestoides A]
 gi|229839502|ref|ZP_04459661.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|115349427|emb|CAL22400.1| cell division protein [Yersinia pestis CO92]
 gi|229695868|gb|EEO85915.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706085|gb|EEO92094.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis Pestoides A]
          Length = 541

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 239 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 298

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 299 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 357

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 358 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 417

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 418 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 477

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 478 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 532


>gi|108806206|ref|YP_650122.1| cell division protein [Yersinia pestis Antiqua]
 gi|165939137|ref|ZP_02227688.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011666|ref|ZP_02232564.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213536|ref|ZP_02239571.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|108778119|gb|ABG12177.1| signal recognition particle-docking protein FtsY [Yersinia pestis
           Antiqua]
 gi|165912910|gb|EDR31536.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165989435|gb|EDR41736.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205209|gb|EDR49689.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|262367473|gb|ACY64030.1| cell division protein [Yersinia pestis D182038]
          Length = 538

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 236 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 295

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 296 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 354

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 355 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 414

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 415 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 474

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 475 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 529


>gi|22124331|ref|NP_667754.1| cell division protein [Yersinia pestis KIM 10]
 gi|162420030|ref|YP_001605168.1| cell division protein [Yersinia pestis Angola]
 gi|167426293|ref|ZP_02318046.1| cell division protein FtsY [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|294505479|ref|YP_003569541.1| cell division membrane protein [Yersinia pestis Z176003]
 gi|21957106|gb|AAM84005.1|AE013642_6 cell division membrane protein [Yersinia pestis KIM 10]
 gi|162352845|gb|ABX86793.1| cell division protein FtsY [Yersinia pestis Angola]
 gi|167054812|gb|EDR64616.1| cell division protein FtsY [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|294355938|gb|ADE66279.1| cell division membrane protein [Yersinia pestis Z176003]
          Length = 553

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 251 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 310

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 311 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 369

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 370 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 429

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 430 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 489

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 490 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 544


>gi|332996587|gb|EGK16212.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           K-272]
 gi|333012995|gb|EGK32371.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           K-227]
          Length = 497

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGVNGVGKTTTIGKL 313

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488


>gi|332996251|gb|EGK15878.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           VA-6]
          Length = 498

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|300936475|ref|ZP_07151395.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 21-1]
 gi|300458397|gb|EFK21890.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 21-1]
          Length = 504

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 202 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 261

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 262 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKL 320

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 321 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 380

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 381 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 440

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 441 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 495


>gi|238750712|ref|ZP_04612211.1| Cell division protein ftsY [Yersinia rohdei ATCC 43380]
 gi|238711102|gb|EEQ03321.1| Cell division protein ftsY [Yersinia rohdei ATCC 43380]
          Length = 555

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 130/300 (43%), Positives = 192/300 (64%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 253 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 312

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
               K +     LY     ++SE++ K+  PL      D S + P+VIL+VGVNGVGKTT
Sbjct: 313 HASRKQLKDAEALYGKLKEEMSEILSKVDKPL------DVSGKNPYVILMVGVNGVGKTT 366

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A 
Sbjct: 367 TIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAI 426

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ VDVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+
Sbjct: 427 QAAKARGVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAV 486

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 487 SQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 546


>gi|323164793|gb|EFZ50585.1| signal recognition particle-docking protein FtsY [Shigella sonnei
           53G]
          Length = 454

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 152 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 211

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 212 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 270

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 271 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 330

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 331 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 390

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 391 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 445


>gi|323154303|gb|EFZ40506.1| signal recognition particle-docking protein FtsY [Escherichia coli
           EPECa14]
          Length = 527

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 225 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 284

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 285 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 343

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 344 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 403

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 404 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 463

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 464 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 518


>gi|218707058|ref|YP_002414577.1| cell division protein FtsY [Escherichia coli UMN026]
 gi|293407045|ref|ZP_06650969.1| cell division protein FtsY [Escherichia coli FVEC1412]
 gi|300898834|ref|ZP_07117138.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 198-1]
 gi|218434155|emb|CAR15072.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein ; conserved hypothetical protein [Escherichia
           coli UMN026]
 gi|284923454|emb|CBG36549.1| cell division protein [Escherichia coli 042]
 gi|291425856|gb|EFE98890.1| cell division protein FtsY [Escherichia coli FVEC1412]
 gi|300357519|gb|EFJ73389.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 198-1]
          Length = 498

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|26250079|ref|NP_756119.1| cell division protein FtsY [Escherichia coli CFT073]
 gi|227883610|ref|ZP_04001415.1| cell division protein FtsY [Escherichia coli 83972]
 gi|300985244|ref|ZP_07177341.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 45-1]
 gi|301050311|ref|ZP_07197200.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 185-1]
 gi|26110508|gb|AAN82693.1|AE016768_111 Cell division protein ftsY [Escherichia coli CFT073]
 gi|227839489|gb|EEJ49955.1| cell division protein FtsY [Escherichia coli 83972]
 gi|300297940|gb|EFJ54325.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 185-1]
 gi|300408115|gb|EFJ91653.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 45-1]
 gi|307555558|gb|ADN48333.1| cell division protein FtsY [Escherichia coli ABU 83972]
 gi|315291681|gb|EFU51037.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 153-1]
          Length = 498

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|238784416|ref|ZP_04628426.1| Cell division protein ftsY [Yersinia bercovieri ATCC 43970]
 gi|238714708|gb|EEQ06710.1| Cell division protein ftsY [Yersinia bercovieri ATCC 43970]
          Length = 519

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 217 FFARLKRSLLKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 276

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P VIL+VGVNGVGKTT IGKL
Sbjct: 277 HASRKQLKDAEALYGKLKEEMSEILSTVDKPLDVS-GKNPFVILMVGVNGVGKTTTIGKL 335

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 336 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 395

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 396 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 455

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 456 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 510


>gi|238798003|ref|ZP_04641492.1| Cell division protein ftsY [Yersinia mollaretii ATCC 43969]
 gi|238718106|gb|EEQ09933.1| Cell division protein ftsY [Yersinia mollaretii ATCC 43969]
          Length = 534

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 232 FFARLKRSLLKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 291

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P VIL+VGVNGVGKTT IGKL
Sbjct: 292 HASRKQLKDAEALYGKLKEEMSEILSTVDKPLDVS-GKNPFVILMVGVNGVGKTTTIGKL 350

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 351 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 410

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 411 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 470

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 471 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDF 525


>gi|315295966|gb|EFU55275.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 16-3]
          Length = 498

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|298382791|ref|ZP_06992386.1| cell division protein FtsY [Escherichia coli FVEC1302]
 gi|298276627|gb|EFI18145.1| cell division protein FtsY [Escherichia coli FVEC1302]
          Length = 527

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 225 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 284

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 285 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 343

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 344 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 403

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 404 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 463

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 464 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 518


>gi|213621992|ref|ZP_03374775.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 479

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 177 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 236

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 237 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 295

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 296 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 355

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 356 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 415

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 416 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 470


>gi|24114724|ref|NP_709234.1| cell division protein FtsY [Shigella flexneri 2a str. 301]
 gi|30065259|ref|NP_839430.1| cell division protein FtsY [Shigella flexneri 2a str. 2457T]
 gi|24053940|gb|AAN44941.1| cell division membrane protein [Shigella flexneri 2a str. 301]
 gi|30043521|gb|AAP19241.1| cell division membrane protein [Shigella flexneri 2a str. 2457T]
 gi|313647237|gb|EFS11689.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           2a str. 2457T]
 gi|332750283|gb|EGJ80694.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           4343-70]
          Length = 498

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|186893578|ref|YP_001870690.1| signal recognition particle-docking protein FtsY [Yersinia
           pseudotuberculosis PB1/+]
 gi|186696604|gb|ACC87233.1| signal recognition particle-docking protein FtsY [Yersinia
           pseudotuberculosis PB1/+]
          Length = 550

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 248 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 307

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 308 HASRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 366

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 367 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 426

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 427 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 486

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 487 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 541


>gi|51594576|ref|YP_068767.1| cell division protein [Yersinia pseudotuberculosis IP 32953]
 gi|51587858|emb|CAH19461.1| cell division protein [Yersinia pseudotuberculosis IP 32953]
          Length = 574

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 272 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 331

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 332 HASRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 390

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 391 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 450

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 451 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 510

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 511 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 565


>gi|323934550|gb|EGB30950.1| signal recognition particle-docking protein FtsY [Escherichia coli
           E1520]
          Length = 516

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 214 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 273

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 274 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 333 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 393 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 453 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 507


>gi|74314064|ref|YP_312483.1| cell division protein FtsY [Shigella sonnei Ss046]
 gi|73857541|gb|AAZ90248.1| cell division membrane protein [Shigella sonnei Ss046]
          Length = 498

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|330505416|ref|YP_004382285.1| signal recognition particle-docking protein FtsY [Pseudomonas
           mendocina NK-01]
 gi|328919702|gb|AEB60533.1| signal recognition particle-docking protein FtsY [Pseudomonas
           mendocina NK-01]
          Length = 443

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 132/297 (44%), Positives = 197/297 (66%), Gaps = 4/297 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  L EG+  + +  + +DD + ++LE  L+ +D+GV     I+  L 
Sbjct: 137 FFARLKQGLSKTSASLGEGMASLFLGKKAIDDDLLDDLETRLLTADVGVEATTTIIGNL- 195

Query: 72  TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           TKR A K+++    LY  + E +  +L P+ +P   D + +P+VILVVGVNGVGKTT IG
Sbjct: 196 TKRVARKELADSGALYKALQEELVTLLKPVEQPLLIDSAKQPYVILVVGVNGVGKTTTIG 255

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ ++A + A
Sbjct: 256 KLAKKLQQDGKKVMLAAGDTFRAAAVEQLQVWGERNNIAVIAQHTGADSASVIFDAVQAA 315

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +++ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 316 KSRGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAISQA 375

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL PF A+ F
Sbjct: 376 KQFNQTVNLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRPFEAQAF 432


>gi|270488845|ref|ZP_06205919.1| signal recognition particle-docking protein FtsY [Yersinia pestis
           KIM D27]
 gi|270337349|gb|EFA48126.1| signal recognition particle-docking protein FtsY [Yersinia pestis
           KIM D27]
          Length = 580

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 278 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 337

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 338 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 396

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 397 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 456

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 457 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 516

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 517 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 571


>gi|238910428|ref|ZP_04654265.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 491

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|224585363|ref|YP_002639162.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469891|gb|ACN47721.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 491

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|78048306|ref|YP_364481.1| cell division protein FtsY [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036736|emb|CAJ24429.1| cell division protein FtsY [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 551

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 120/264 (45%), Positives = 173/264 (65%), Gaps = 3/264 (1%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLM 97
           +LDD + +E+E  LI +D+G+     +++ L  +  +++    + L+    ++LI  +L 
Sbjct: 273 KLDDDLLDEIETALITADVGIGATTALIDGLRKRMKSREFVDAQALFKALRADLIA-LLQ 331

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+SKP   D S +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ Q
Sbjct: 332 PVSKPLVIDRSLKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQ 391

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+ W DR     +     +DAA++A++A + A+A+  DVLI DTAGRLH  + LM  +GK
Sbjct: 392 LQAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGK 451

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RVL ++D  APH VL V+D TTGQNA+ Q+  FHA  G TGL++TK+DGTA+GG +  
Sbjct: 452 IRRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFA 511

Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301
           +     IP+ F G+GE   DL  F
Sbjct: 512 LAREFNIPIRFAGIGERPEDLRVF 535


>gi|148358595|ref|YP_001249802.1| cell division membrane protein FtsY [Legionella pneumophila str.
           Corby]
 gi|148280368|gb|ABQ54456.1| cell division membrane protein FtsY [Legionella pneumophila str.
           Corby]
          Length = 355

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 135/309 (43%), Positives = 189/309 (61%), Gaps = 3/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           K  S   S   +  KG + T  +L EGI+ ++   + +   + EELE LLI +D+G+   
Sbjct: 41  KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121
           Q ++++L      K +S    +Y   +     +L P  KP + +     P VIL+VGVNG
Sbjct: 101 QDVLKQLNEGLARKQLSNGEAVYQTLKTNFATILSPEEKPLSIETEDGSPFVILMVGVNG 160

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL +W +R     +    G+D+A++
Sbjct: 161 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+K+DVLI DTAGRLH  S LM  + K+ RV+++LDP APH  + VLDA+ 
Sbjct: 221 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + FH     TG+ MTK+DGTA+GG L  I     IP  +LGVGEGI DL PF
Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340

Query: 302 VAKDFSAVI 310
            A  F + I
Sbjct: 341 DAAQFVSAI 349


>gi|324111785|gb|EGC05765.1| signal recognition particle-docking protein FtsY [Escherichia
           fergusonii B253]
          Length = 512

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 210 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 269

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 270 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 328

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 329 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 388

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 389 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 448

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 449 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 503


>gi|323966128|gb|EGB61565.1| signal recognition particle-docking protein FtsY [Escherichia coli
           M863]
 gi|327251100|gb|EGE62793.1| signal recognition particle-docking protein FtsY [Escherichia coli
           STEC_7v]
          Length = 512

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 210 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 269

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 270 GATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 328

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 329 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 388

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 389 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 448

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 449 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 503


>gi|283787901|ref|YP_003367766.1| cell division protein [Citrobacter rodentium ICC168]
 gi|282951355|emb|CBG91054.1| cell division protein [Citrobacter rodentium ICC168]
          Length = 494

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/292 (42%), Positives = 185/292 (63%), Gaps = 2/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L     
Sbjct: 195 RLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTEGAS 254

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LY +  + + ++L  + +P N D    P VIL+VGVNGVGKTT IGKL+++
Sbjct: 255 RKQLRDAEALYGLLKDEMSEILAKVDEPLNVD-GKTPFVILMVGVNGVGKTTTIGKLARQ 313

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A+ +
Sbjct: 314 FEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNI 373

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q  +FH 
Sbjct: 374 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTGQNAVSQARLFHE 433

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 434 AVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 485


>gi|170026190|ref|YP_001722695.1| signal recognition particle-docking protein FtsY [Yersinia
           pseudotuberculosis YPIII]
 gi|169752724|gb|ACA70242.1| signal recognition particle-docking protein FtsY [Yersinia
           pseudotuberculosis YPIII]
          Length = 523

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 221 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 280

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + KP +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 281 HTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVNGVGKTTTIGKL 339

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+A
Sbjct: 340 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVIFDAIQAAKA 399

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++
Sbjct: 400 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKL 459

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF A +F
Sbjct: 460 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFKADEF 514


>gi|168241723|ref|ZP_02666655.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449622|ref|YP_002047596.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194407926|gb|ACF68145.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338916|gb|EDZ25680.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 491

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|153214853|ref|ZP_01949661.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           1587]
 gi|124115096|gb|EAY33916.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           1587]
          Length = 383

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 191/296 (64%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 79  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 138

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + +P   D   + +VIL+VGVNGVGKTT IGK
Sbjct: 139 AKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKTYVILMVGVNGVGKTTTIGK 198

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 199 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 258

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 259 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 318

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 319 LFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 374


>gi|21243285|ref|NP_642867.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108823|gb|AAM37403.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 554

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 119/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98
           +LDD + +E+E  LI +D+G+     +++ L  +  +++ V  Q +   +   +  +L P
Sbjct: 276 KLDDDLLDEIETALITADVGIGATTALIDGLRKRMKSREFVDAQAMFKALRADLIALLQP 335

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP   D S +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL
Sbjct: 336 VSKPLVIDRSLKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 395

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + W DR     +     +DAA++A++A + A+A+  DVLI DTAGRLH  + LM  +GK+
Sbjct: 396 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 455

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RVL ++D  APH VL V+D TTGQNA+ Q+  FHA  G TGL++TK+DGTA+GG +  +
Sbjct: 456 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 515

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
                IP+ F G+GE   DL  F
Sbjct: 516 AREFNIPIRFAGIGERPEDLRVF 538


>gi|156936373|ref|YP_001440289.1| cell division protein FtsY [Cronobacter sakazakii ATCC BAA-894]
 gi|156534627|gb|ABU79453.1| hypothetical protein ESA_04273 [Cronobacter sakazakii ATCC BAA-894]
          Length = 517

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 215 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVDTTRKIIANLTE 274

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 275 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 333

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 334 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 393

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD +APH V+  +DA+TGQNA+ Q ++
Sbjct: 394 RGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEVMLTIDASTGQNAVSQAKL 453

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 454 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 508


>gi|166711627|ref|ZP_02242834.1| cell division protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 553

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 118/263 (44%), Positives = 171/263 (65%), Gaps = 1/263 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98
           +LDD + +E+E  LI +D+G+     ++E L  +  +++ +  Q +   +   +  +L P
Sbjct: 275 KLDDDLLDEIETALITADVGIGATTALIEGLRKRMKSREFIDAQAMFKALRADLIALLQP 334

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP   D + +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL
Sbjct: 335 VSKPLVIDRARKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 394

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + W DR     +     +DAA++A++A + A+A+  DVLI DTAGRLH  + LM  +GK+
Sbjct: 395 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 454

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RVL ++D  APH VL V+D TTGQNA+ Q+  FHA  G TGL++TK+DGTA+GG +  +
Sbjct: 455 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 514

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
                IP+ F G+GE   DL  F
Sbjct: 515 AREFNIPIRFAGIGERPEDLRVF 537


>gi|294667547|ref|ZP_06732762.1| cell division protein FtsY [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602667|gb|EFF46103.1| cell division protein FtsY [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 497

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 119/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98
           +LDD + +E+E  LI +D+G+     +++ L  +  +++ V  Q +   +   +  +L P
Sbjct: 219 KLDDDLLDEIETALITADVGIGATTALIDGLRKRMKSREFVDAQAMFKALRADLIALLQP 278

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP   D S +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL
Sbjct: 279 VSKPLVIDRSLKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 338

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + W DR     +     +DAA++A++A + A+A+  DVLI DTAGRLH  + LM  +GK+
Sbjct: 339 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 398

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RVL ++D  APH VL V+D TTGQNA+ Q+  FHA  G TGL++TK+DGTA+GG +  +
Sbjct: 399 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 458

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
                IP+ F G+GE   DL  F
Sbjct: 459 AREFNIPIRFAGIGERPEDLRVF 481


>gi|332345419|gb|AEE58753.1| signal recognition particle-docking protein FtsY [Escherichia coli
           UMNK88]
          Length = 498

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|254876344|ref|ZP_05249054.1| signal recognition particle receptor ftsY [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842365|gb|EET20779.1| signal recognition particle receptor ftsY [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 334

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 123/297 (41%), Positives = 196/297 (65%), Gaps = 2/297 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ DD + E++E  L+ SD+GV    +I+E L  K 
Sbjct: 31  RLQSGLSKTASKFGSGLSTILMGQKVVDDELLEDIEMQLLTSDVGVEATDEIIEYLRGKV 90

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              ++     L ++  + + ++++P  KP   +  + P+VIL+VGVNGVGKTT IGKL+K
Sbjct: 91  ARNELQTADKLNEIIQDKLTEIILPCQKPLQINHENTPYVILIVGVNGVGKTTTIGKLTK 150

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+   G  V+LAAGDTFR+AA++QL+ W DR +   V  + G+D+A++ Y+A   A+++ 
Sbjct: 151 KLQSEGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQKEGADSASVIYDAISSAKSRG 210

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+I DTAGRLHN   LM  + K+++V+K++D  APH  + V+DATTG NAL Q E F+
Sbjct: 211 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKVDDSAPHETMLVVDATTGGNALSQAEAFN 270

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F AK+F+  +
Sbjct: 271 EIVNLTGITITKLDGTAKGGIVFSIAKKMGLPLRFIGVGEKIDDLQVFNAKNFTKAL 327


>gi|168260700|ref|ZP_02682673.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168465148|ref|ZP_02699040.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195632106|gb|EDX50590.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205350194|gb|EDZ36825.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 491

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|204928517|ref|ZP_03219716.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321950|gb|EDZ07148.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 491

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|168232718|ref|ZP_02657776.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194470486|ref|ZP_03076470.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194456850|gb|EDX45689.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205333169|gb|EDZ19933.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 491

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|194442699|ref|YP_002042816.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194401362|gb|ACF61584.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 491

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|16762733|ref|NP_458350.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144220|ref|NP_807562.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213053204|ref|ZP_03346082.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213426831|ref|ZP_03359581.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213585937|ref|ZP_03367763.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213650000|ref|ZP_03380053.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213859529|ref|ZP_03385233.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289829448|ref|ZP_06547060.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25300177|pir||AG0991 cell division protein [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16505039|emb|CAD08059.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139857|gb|AAO71422.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 491

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|107099358|ref|ZP_01363276.1| hypothetical protein PaerPA_01000370 [Pseudomonas aeruginosa PACS2]
          Length = 454

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 189/297 (63%), Gaps = 4/297 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L 
Sbjct: 148 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 206

Query: 72  TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           TKR A K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 207 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 266

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 267 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 326

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 327 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 386

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F
Sbjct: 387 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 443


>gi|254237391|ref|ZP_04930714.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           C3719]
 gi|126169322|gb|EAZ54833.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           C3719]
          Length = 456

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 189/297 (63%), Gaps = 4/297 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L 
Sbjct: 150 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 208

Query: 72  TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           TKR A K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 209 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 268

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 269 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 328

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 329 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 388

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F
Sbjct: 389 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 445


>gi|332763553|gb|EGJ93792.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           2930-71]
 gi|332997161|gb|EGK16777.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           K-218]
          Length = 516

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 214 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 273

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 274 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGVNGVGKTTTIGKL 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 333 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 393 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 453 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 507


>gi|16766857|ref|NP_462472.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161616619|ref|YP_001590584.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167990787|ref|ZP_02571886.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|197264581|ref|ZP_03164655.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|200388762|ref|ZP_03215374.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|16422131|gb|AAL22431.1| GTPase domain of cell division membrane protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|161365983|gb|ABX69751.1| hypothetical protein SPAB_04436 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197242836|gb|EDY25456.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|199605860|gb|EDZ04405.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205330664|gb|EDZ17428.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261248724|emb|CBG26562.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995802|gb|ACY90687.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160110|emb|CBW19630.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914594|dbj|BAJ38568.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321226620|gb|EFX51670.1| Signal recognition particle receptor protein FtsY [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323131930|gb|ADX19360.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332990422|gb|AEF09405.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 491

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|241667800|ref|ZP_04755378.1| signal recognition particle-docking protein FtsY [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 333

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 123/297 (41%), Positives = 196/297 (65%), Gaps = 2/297 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ DD + E++E  L+ SD+GV    +I+E L  K 
Sbjct: 30  RLQSGLSKTASKFGSGLSTILMGQKVVDDELLEDIEMQLLTSDVGVEATDEIIEYLRGKV 89

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              ++     L ++  + + ++++P  KP   +  + P+VIL+VGVNGVGKTT IGKL+K
Sbjct: 90  ARNELQTADKLNEIIQDKLTEIILPCQKPLQINHENTPYVILIVGVNGVGKTTTIGKLTK 149

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+   G  V+LAAGDTFR+AA++QL+ W DR +   V  + G+D+A++ Y+A   A+++ 
Sbjct: 150 KLQSEGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQKEGADSASVIYDAISSAKSRG 209

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+I DTAGRLHN   LM  + K+++V+K++D  APH  + V+DATTG NAL Q E F+
Sbjct: 210 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKVDDSAPHETMLVVDATTGGNALSQAEAFN 269

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F AK+F+  +
Sbjct: 270 EIVNLTGITITKLDGTAKGGIVFSIAKKMGLPLRFIGVGEKIDDLQVFNAKNFTKAL 326


>gi|218889114|ref|YP_002437978.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           LESB58]
 gi|218769337|emb|CAW25097.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           LESB58]
          Length = 456

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 189/297 (63%), Gaps = 4/297 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L 
Sbjct: 150 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 208

Query: 72  TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           TKR A K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 209 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 268

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 269 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 328

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 329 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 388

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F
Sbjct: 389 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 445


>gi|157964925|ref|YP_001499749.1| Signal recognition particle-docking protein FtsY [Rickettsia
           massiliae MTU5]
 gi|157844701|gb|ABV85202.1| Signal recognition particle-docking protein FtsY [Rickettsia
           massiliae MTU5]
          Length = 303

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 134/303 (44%), Positives = 193/303 (63%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD    EELE+LLI SD+ V+V   I+EEL
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVSVVTNIIEEL 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L     PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDNHTVKEALAKLIEQQLSKSEIPFTLS-KNKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AAI+QL  WADR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAINQLSTWADRANALLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HSVL V+DA TGQN   QV
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  
Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVRVVQKFNLPLYFIGIGEKIEDLKIFNRHDFARN 299

Query: 310 ITG 312
           + G
Sbjct: 300 LVG 302


>gi|311277611|ref|YP_003939842.1| signal recognition particle-docking protein FtsY [Enterobacter
           cloacae SCF1]
 gi|308746806|gb|ADO46558.1| signal recognition particle-docking protein FtsY [Enterobacter
           cloacae SCF1]
          Length = 475

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 173 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 232

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 233 GASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 291

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 292 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 351

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 352 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAISQAKL 411

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 412 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 466


>gi|168818612|ref|ZP_02830612.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205344537|gb|EDZ31301.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
          Length = 491

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|167549211|ref|ZP_02342970.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205354811|ref|YP_002228612.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858809|ref|YP_002245460.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205274592|emb|CAR39642.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205325845|gb|EDZ13684.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|206710612|emb|CAR34970.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326629955|gb|EGE36298.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 491

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|134299913|ref|YP_001113409.1| signal recognition particle-docking protein FtsY [Desulfotomaculum
           reducens MI-1]
 gi|134052613|gb|ABO50584.1| signal recognition particle-docking protein FtsY [Desulfotomaculum
           reducens MI-1]
          Length = 309

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 134/304 (44%), Positives = 194/304 (63%), Gaps = 3/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +    T     E I  +++ R  +D+ + EELE++LI++D+GV+ A K+VE 
Sbjct: 1   MGFFDRLKESLTKTRQSFIEKIDQVVTGRTGIDEDLYEELEEVLIQADVGVSTAMKLVER 60

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +     A++V     L ++  E +  ++     P   +    P VI+VVGVNGVGKTT I
Sbjct: 61  VRKGVKARNVQEASRLKEIFQEELEYLMGEKITPIQLN-PEGPTVIMVVGVNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++    + G KV+LAAGDTFR+AAIDQL+IWADR   D +  + GSD  A+AY+A   
Sbjct: 120 GKMAHNFKEQGKKVLLAAGDTFRAAAIDQLEIWADRVGVDIIKHQEGSDPGAVAYDAVHA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+++K D+L++DTAGRLHN S LM  + K+ +++ R  P APH VL VLDATTGQNAL Q
Sbjct: 180 ARSRKADILLVDTAGRLHNKSNLMDELRKVHKIVAREMPGAPHEVLLVLDATTGQNALNQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V++F      TG+ +TK+DGTA+GG +  IV    IPV  +G+GE ++DL PF  KDF  
Sbjct: 240 VKIFSEAVNVTGIALTKLDGTAKGGVVTSIVTEMAIPVKLIGIGERMDDLRPFNPKDFIN 299

Query: 309 VITG 312
            + G
Sbjct: 300 ALYG 303


>gi|294626162|ref|ZP_06704768.1| cell division protein FtsY [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599514|gb|EFF43645.1| cell division protein FtsY [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 492

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 119/263 (45%), Positives = 171/263 (65%), Gaps = 1/263 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98
           +LDD + +E+E  LI +D+G+     +++ L  +  +++ V  Q +   +   +  +L P
Sbjct: 214 KLDDDLLDEIETALITADVGIGATTALIDGLRKRMKSREFVDAQAMFKALRADLIALLQP 273

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP   D S +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL
Sbjct: 274 VSKPLVIDRSLKPFVVLTVGVNGVGKTTTIGKLAKRFKDEGNSLMLAAGDTFRAAAVAQL 333

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + W DR     +     +DAA++A++A + A+A+  DVLI DTAGRLH  + LM  +GK+
Sbjct: 334 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTDVLIADTAGRLHTQTGLMNELGKI 393

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RVL ++D  APH VL V+D TTGQNA+ Q+  FHA  G TGL++TK+DGTA+GG +  +
Sbjct: 394 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 453

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
                IP+ F G+GE   DL  F
Sbjct: 454 AREFNIPIRFAGIGERPEDLRVF 476


>gi|294789648|ref|ZP_06754882.1| signal recognition particle-docking protein FtsY [Simonsiella
           muelleri ATCC 29453]
 gi|294482449|gb|EFG30142.1| signal recognition particle-docking protein FtsY [Simonsiella
           muelleri ATCC 29453]
          Length = 480

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 130/313 (41%), Positives = 193/313 (61%), Gaps = 14/313 (4%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M  +++ S+ L W  +L +G   +  ++ + +  +    ++D+ + EELE  L+ SD+G+
Sbjct: 168 MPPEQIESDKLGWTARLKQGLTKSRNQMAKSLAGVFGGGKIDEDLYEELETTLLISDMGI 227

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHV 113
              ++++ E+      K VS+ + L D +EL       ++++L PL KP     + +P V
Sbjct: 228 EATEQLMNEV-----RKRVSL-KGLKDGNELRTTLKDALYELLKPLEKPLEIPNNGQPFV 281

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I++ G+NG GKTT IGKL+K     G  VMLAAGDTFR+AA +QL+ W  R     V S+
Sbjct: 282 IMMAGINGAGKTTSIGKLAKYFQAQGKSVMLAAGDTFRAAAREQLQEWGARNGV-TVISQ 340

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D+AA+ ++A + A+AKK+DV++ DTAGRL     LM  I K+ RVL++  P APH V
Sbjct: 341 ASGDSAAVCFDAVESAKAKKIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEV 400

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + VLDA  GQNA+ QV  F    G TGLI+TK+DGTA+GG L  +     IPV ++GVGE
Sbjct: 401 MVVLDANIGQNAINQVVAFDDALGVTGLIVTKLDGTAKGGVLAALASNRPIPVRYIGVGE 460

Query: 294 GINDLEPFVAKDF 306
           GI+DL PF A+ F
Sbjct: 461 GIDDLRPFDARAF 473


>gi|325053854|pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
           (Srp) In Complex With Its Receptor(Sr)
 gi|325053856|pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
           (Srp) In Complex With Its Receptor(Sr)
          Length = 302

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 124/292 (42%), Positives = 186/292 (63%), Gaps = 2/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L     
Sbjct: 3   RLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGAS 62

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL+++
Sbjct: 63  RKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKLARQ 121

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A+ +
Sbjct: 122 FEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNI 181

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++FH 
Sbjct: 182 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHE 241

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 242 AVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 293


>gi|296386871|ref|ZP_06876370.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           PAb1]
          Length = 453

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 189/297 (63%), Gaps = 4/297 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L 
Sbjct: 147 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 205

Query: 72  TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           TKR A K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 206 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 265

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 266 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 325

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 326 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 385

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F
Sbjct: 386 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 442


>gi|15595570|ref|NP_249064.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           PAO1]
 gi|9946225|gb|AAG03762.1|AE004475_4 signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           PAO1]
          Length = 455

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 189/297 (63%), Gaps = 4/297 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L 
Sbjct: 149 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 207

Query: 72  TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           TKR A K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 208 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 267

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 268 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 327

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 328 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 387

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F
Sbjct: 388 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 444


>gi|116054103|ref|YP_788546.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115589324|gb|ABJ15339.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 451

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 189/297 (63%), Gaps = 4/297 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L 
Sbjct: 145 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 203

Query: 72  TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           TKR A K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 204 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 263

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 264 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 323

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 324 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 383

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F
Sbjct: 384 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 440


>gi|157368470|ref|YP_001476459.1| signal recognition particle-docking protein FtsY [Serratia
           proteamaculans 568]
 gi|157320234|gb|ABV39331.1| signal recognition particle-docking protein FtsY [Serratia
           proteamaculans 568]
          Length = 535

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 189/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 233 FFARLKRSLVKTKQNLGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTQ 292

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + +P +      P+VIL+VGVNGVGKTT IGKL
Sbjct: 293 HASRKQLKDAEALYGKLKEEMSEILAKVDQPLDVG-GKNPYVILMVGVNGVGKTTTIGKL 351

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A+A
Sbjct: 352 ARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKA 411

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+ +LDA+TGQNA+ Q ++
Sbjct: 412 RGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDDQAPHEVMLILDASTGQNAVSQAKL 471

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 472 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLRPFKADDF 526


>gi|158430492|pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
           Receptor Ftsy
          Length = 309

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 124/292 (42%), Positives = 186/292 (63%), Gaps = 2/292 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L     
Sbjct: 4   RLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGAS 63

Query: 76  AKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL+++
Sbjct: 64  RKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKLARQ 122

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A+ +
Sbjct: 123 FEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNI 182

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++FH 
Sbjct: 183 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHE 242

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 243 AVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 294


>gi|56415470|ref|YP_152545.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364399|ref|YP_002144036.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129727|gb|AAV79233.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095876|emb|CAR61450.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 491

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKAGDF 482


>gi|51892595|ref|YP_075286.1| signal recognition particle [Symbiobacterium thermophilum IAM
           14863]
 gi|51856284|dbj|BAD40442.1| signal recognition particle [Symbiobacterium thermophilum IAM
           14863]
          Length = 320

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 141/301 (46%), Positives = 199/301 (66%), Gaps = 8/301 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S+  +L  G   T   L   +  ++S  R++DD + +ELE+ LIR D+GVA + K+VEE
Sbjct: 16  VSFFERLKAGLQKTKEALIGQVNTVMSVFRKIDDDLFDELEEALIRGDVGVATSAKLVEE 75

Query: 70  LLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           L  +R A+   ++    +L  + EL+ + L   + P   +      VILVVGVNGVGKTT
Sbjct: 76  L--RREARQKGLKNGDELLPLLKELVAERLGSGAAPLRLNEGGL-TVILVVGVNGVGKTT 132

Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
            IGKL++ +  D GLKV+LAA DTFR+AA+DQLK+W +R  A+ V    G+D AA+A++ 
Sbjct: 133 TIGKLARHLREDRGLKVVLAAADTFRAAAMDQLKVWGERAGAEVVAGPEGADPAAVAFDG 192

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K A+A   DVLI+DTAGRLHN + LMA +GK+ RVL R  P APH  L VLDATTGQNA
Sbjct: 193 VKAARASGADVLIVDTAGRLHNKAHLMAELGKIARVLGREVPGAPHETLLVLDATTGQNA 252

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           ++Q  +F      TG+ +TK+DGTA+GG ++ I  T ++PV F+GVGE ++DL+PF  + 
Sbjct: 253 IQQTRLFKETVPVTGIALTKLDGTAKGGVVVAIADTEQVPVKFIGVGERLDDLQPFDPRQ 312

Query: 306 F 306
           F
Sbjct: 313 F 313


>gi|322834886|ref|YP_004214913.1| signal recognition particle-docking protein FtsY [Rahnella sp.
           Y9602]
 gi|321170087|gb|ADW75786.1| signal recognition particle-docking protein FtsY [Rahnella sp.
           Y9602]
          Length = 493

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 127/300 (42%), Positives = 190/300 (63%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 191 FFARLKRSLVKTKQNLGSGFVGLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 250

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
               K +     LY     ++SE++ K+  PL      D S + P+VIL+VGVNGVGKTT
Sbjct: 251 HASRKQLKDADALYGKLKEEMSEILAKVDEPL------DVSGKTPYVILMVGVNGVGKTT 304

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGK++++    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A 
Sbjct: 305 TIGKMARQFEAQGKSVMLAAGDTFRAAAVEQLQVWGQRNKIPVIAQHTGADSASVIFDAI 364

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ +DVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+
Sbjct: 365 QAAKARNIDVLIADTAGRLQNKTHLMEELKKIVRVMKKLDEDAPHEVMLTLDASTGQNAV 424

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 425 SQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFKADDF 484


>gi|194427035|ref|ZP_03059587.1| cell division protein FtsY [Escherichia coli B171]
 gi|194414996|gb|EDX31266.1| cell division protein FtsY [Escherichia coli B171]
          Length = 497

 Score =  235 bits (599), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 255 DASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD   PH V+  +DA+TGQNA+ Q ++
Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVETPHEVMLTIDASTGQNAVSQAKL 433

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488


>gi|152972338|ref|YP_001337484.1| cell division protein FtsY [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150957187|gb|ABR79217.1| cell division membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 507

 Score =  235 bits (599), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 205 FFARLKRSLLKTKQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 264

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 265 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 323

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 324 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 383

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 384 RHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDASTGQNAISQAKL 443

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 444 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 498


>gi|152987106|ref|YP_001345863.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           PA7]
 gi|150962264|gb|ABR84289.1| cell division protein FtsY [Pseudomonas aeruginosa PA7]
          Length = 447

 Score =  234 bits (598), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 188/297 (63%), Gaps = 4/297 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L 
Sbjct: 141 FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL- 199

Query: 72  TKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           TKR A K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 200 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 259

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 260 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 319

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 320 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 379

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F
Sbjct: 380 RQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAF 436


>gi|238896927|ref|YP_002921672.1| cell division protein FtsY [Klebsiella pneumoniae NTUH-K2044]
 gi|238549254|dbj|BAH65605.1| cell division membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 507

 Score =  234 bits (598), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 205 FFARLKRSLLKTKQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 264

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 265 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 323

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 324 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 383

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 384 RHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDASTGQNAISQAKL 443

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 444 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 498


>gi|21231854|ref|NP_637771.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768019|ref|YP_242781.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188991144|ref|YP_001903154.1| Cell division protein FtsY [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21113573|gb|AAM41695.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66573351|gb|AAY48761.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167732904|emb|CAP51100.1| Cell division protein FtsY [Xanthomonas campestris pv. campestris]
          Length = 546

 Score =  234 bits (598), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 121/268 (45%), Positives = 172/268 (64%), Gaps = 1/268 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP 98
           +LDD + +E+E  LI +D+G+     +VE L  +  +++ V  Q +       +  +L P
Sbjct: 268 KLDDDLLDEIETALITADVGIGATTALVEGLRKRMKSREFVDAQAMFKAFRADLIALLQP 327

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP   D S +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL
Sbjct: 328 VSKPLVIDRSVKPFVVLTVGVNGVGKTTTIGKLAKRFKDDGHSLMLAAGDTFRAAAVAQL 387

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + W DR     +     +DAA++A++A + A+A+  +VLI DTAGRLH  + LM  +GK+
Sbjct: 388 QAWGDRNGVAVIAQGQNADAASVAFDALQAAKARGTEVLIADTAGRLHTQTGLMNELGKI 447

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RVL ++D  APH VL V+D TTGQNA+ Q+  FHA  G TGL++TK+DGTA+GG +  +
Sbjct: 448 RRVLGKIDAAAPHEVLMVIDGTTGQNAISQLRQFHAAVGVTGLVVTKLDGTAKGGVVFAL 507

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                IP+ F G+GE   DL  F  + F
Sbjct: 508 AREFGIPIRFAGIGERPEDLRVFDPEAF 535


>gi|288942586|ref|YP_003444826.1| signal recognition particle-docking protein FtsY [Allochromatium
           vinosum DSM 180]
 gi|288897958|gb|ADC63794.1| signal recognition particle-docking protein FtsY [Allochromatium
           vinosum DSM 180]
          Length = 422

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/258 (44%), Positives = 167/258 (64%), Gaps = 1/258 (0%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+G+  + +++ +L  +   K ++  + +L  + E +  +L  +  P       +P V+
Sbjct: 165 ADVGIETSTRLIADLTARVKRKKITDPEALLAALKEDLRTILRAVDGPVKQPAPGKPQVV 224

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNG GKTT IGKL+K++ + G  VMLAAGDTFR+AA++QL+ W +R     V    
Sbjct: 225 LMVGVNGAGKTTTIGKLAKRLQEEGNSVMLAAGDTFRAAAVEQLETWGERNGVPVVAQHT 284

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D+A++ ++A + A A+  DVLI DTAGRLH  + LM  + K+ RVLK+LDP APH V+
Sbjct: 285 GADSASVIFDALQAATARGADVLIADTAGRLHTKTNLMDELSKVARVLKKLDPEAPHEVM 344

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DATTGQNAL Q E FH   G TG+ +TK+DGTA+GG L  I    ++P+ F+GVGE 
Sbjct: 345 LVVDATTGQNALNQAEHFHRAVGLTGITLTKLDGTAKGGILFAIAERLRVPIRFIGVGES 404

Query: 295 INDLEPFVAKDFSAVITG 312
           I DL PF   +F   + G
Sbjct: 405 IEDLRPFDPDEFVEALLG 422


>gi|262040530|ref|ZP_06013771.1| signal recognition particle-docking protein FtsY [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|329999134|ref|ZP_08303335.1| signal recognition particle-docking protein FtsY [Klebsiella sp. MS
           92-3]
 gi|259042123|gb|EEW43153.1| signal recognition particle-docking protein FtsY [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|328538428|gb|EGF64549.1| signal recognition particle-docking protein FtsY [Klebsiella sp. MS
           92-3]
          Length = 517

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 215 FFARLKRSLLKTKQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 274

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 275 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 333

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 334 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 393

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 394 RHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDASTGQNAISQAKL 453

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 454 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 508


>gi|290511957|ref|ZP_06551325.1| cell division protein FtsY [Klebsiella sp. 1_1_55]
 gi|289775747|gb|EFD83747.1| cell division protein FtsY [Klebsiella sp. 1_1_55]
          Length = 504

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 202 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 261

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 262 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 320

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 321 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 380

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 381 RHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDASTGQNAISQAKL 440

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 441 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 495


>gi|281180493|dbj|BAI56823.1| ABC transporter permease component [Escherichia coli SE15]
          Length = 498

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGLRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|206578548|ref|YP_002236165.1| cell division protein FtsY [Klebsiella pneumoniae 342]
 gi|206567606|gb|ACI09382.1| cell division protein FtsY [Klebsiella pneumoniae 342]
          Length = 507

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 205 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 264

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 265 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 323

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 324 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 383

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 384 RHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDASTGQNAISQAKL 443

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 444 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 498


>gi|91212953|ref|YP_542939.1| cell division protein FtsY [Escherichia coli UTI89]
 gi|218560532|ref|YP_002393445.1| cell division protein FtsY [Escherichia coli S88]
 gi|237703211|ref|ZP_04533692.1| cell division protein FtsY [Escherichia sp. 3_2_53FAA]
 gi|91074527|gb|ABE09408.1| cell division protein FtsY [Escherichia coli UTI89]
 gi|218367301|emb|CAR05079.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein ; conserved hypothetical protein [Escherichia
           coli S88]
 gi|226902475|gb|EEH88734.1| cell division protein FtsY [Escherichia sp. 3_2_53FAA]
 gi|294490549|gb|ADE89305.1| cell division protein FtsY [Escherichia coli IHE3034]
 gi|307628537|gb|ADN72841.1| cell division protein FtsY [Escherichia coli UM146]
 gi|315286125|gb|EFU45563.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 110-3]
 gi|323950132|gb|EGB46015.1| signal recognition particle-docking protein FtsY [Escherichia coli
           H252]
          Length = 498

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQN + Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNGVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|146309189|ref|YP_001189654.1| signal recognition particle-docking protein FtsY [Pseudomonas
           mendocina ymp]
 gi|145577390|gb|ABP86922.1| signal recognition particle-docking protein FtsY [Pseudomonas
           mendocina ymp]
          Length = 475

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/298 (44%), Positives = 197/298 (66%), Gaps = 4/298 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S+  +L +G + TS  L EG+  + +  + +DD + ++LE  L+ +D+GV     I+  L
Sbjct: 168 SFFARLKQGLSKTSASLGEGMASLFLGKKAIDDDLLDDLETRLLTADVGVEATTTIIGNL 227

Query: 71  LTKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            TKR A K+++    LY  + E +  +L P+ +P   D + +P+VILVVGVNGVGKTT I
Sbjct: 228 -TKRVARKELADSGALYKALQEELVTLLKPVEQPLVIDSAKQPYVILVVGVNGVGKTTTI 286

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+KK+   G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ ++A + 
Sbjct: 287 GKLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNNIAVIAQHTGADSASVIFDAVQA 346

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+++ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q
Sbjct: 347 AKSRGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAISQ 406

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F      TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL PF A+ F
Sbjct: 407 AKQFDQTVNLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRPFEAQAF 464


>gi|258546171|ref|ZP_05706405.1| signal recognition particle-docking protein FtsY [Cardiobacterium
           hominis ATCC 15826]
 gi|258518596|gb|EEV87455.1| signal recognition particle-docking protein FtsY [Cardiobacterium
           hominis ATCC 15826]
          Length = 428

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/304 (40%), Positives = 189/304 (62%), Gaps = 7/304 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVA 63
           K  +ES  +  ++ +G A T    + G  D+ +  + LD  + ++LE  L+ +D+G+ V 
Sbjct: 122 KPKNESGGYFARIRQGLAKT----RRGFADLFLGKKTLDQDLIDDLETQLLTADVGIEVT 177

Query: 64  QKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + I++ +  +   K++  V+ V   V + + ++L P ++P +   + +P VIL+ G+NG 
Sbjct: 178 RNIIDSVTAQIDRKELKDVEAVKAAVRDHMQQLLAPYAQPLDTSRT-KPFVILMTGINGA 236

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++     G KVMLAAGDTFR+AA++QL+ W  R +   +    G+DAA++A
Sbjct: 237 GKTTTIGKLARYFQQEGKKVMLAAGDTFRAAAVEQLQTWGARHNVPVIAQGTGADAASVA 296

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A A+ +DVLIIDTAGRLH    LM  + K+ RV+ +LDP APH  + ++DA  G
Sbjct: 297 YDALQSATARGIDVLIIDTAGRLHTQDHLMEELKKIKRVIAKLDPAAPHETMLIIDAGNG 356

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNALRQ E FH       + +TK+DGTA+GG L  I     IP+ ++GVGE   DL PF 
Sbjct: 357 QNALRQAEQFHKAMQLDSITVTKLDGTAKGGILFAISEKLGIPIRYIGVGEQPEDLRPFN 416

Query: 303 AKDF 306
           A++F
Sbjct: 417 AQEF 420


>gi|331674949|ref|ZP_08375706.1| cell division protein FtsY [Escherichia coli TA280]
 gi|331067858|gb|EGI39256.1| cell division protein FtsY [Escherichia coli TA280]
          Length = 527

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 225 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 284

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 285 GASRKQLRDAEALYGLLKDEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 343

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 344 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 403

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 404 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 463

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 464 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 518


>gi|82545827|ref|YP_409774.1| cell division protein FtsY [Shigella boydii Sb227]
 gi|187733547|ref|YP_001882149.1| cell division protein FtsY [Shigella boydii CDC 3083-94]
 gi|81247238|gb|ABB67946.1| cell division membrane protein [Shigella boydii Sb227]
 gi|187430539|gb|ACD09813.1| cell division protein FtsY [Shigella boydii CDC 3083-94]
 gi|320187768|gb|EFW62443.1| cell division protein FtsY [Shigella flexneri CDC 796-83]
          Length = 497

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 255 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 313

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 314 ARQFELQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488


>gi|254482617|ref|ZP_05095855.1| signal recognition particle-docking protein FtsY [marine gamma
           proteobacterium HTCC2148]
 gi|214036976|gb|EEB77645.1| signal recognition particle-docking protein FtsY [marine gamma
           proteobacterium HTCC2148]
          Length = 372

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/318 (40%), Positives = 199/318 (62%), Gaps = 4/318 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59
            +N     +      +L +G   TS  L +G+ ++   R+ +D+ + EELE  L+ +D+G
Sbjct: 54  FTNDAAPQDKPGIFGRLRRGLGRTSDSLVQGLGNLFLGRKEIDEELLEELESRLLMADVG 113

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVG 118
           +     I+++L+ +   K+++   +L    +     L+ P  +P +    H+P+VIL+VG
Sbjct: 114 IEATMDIIDKLMLRVSRKELTNPELLQGALKEELLSLLKPCEQPLSVS-GHQPYVILMVG 172

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W DR S   V    G+D+
Sbjct: 173 VNGVGKTTTIGKLAKRFQSQGKSVMLAAGDTFRAAAVEQLQVWGDRNSVPVVAQHTGADS 232

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ ++A + AQA+ +DVLI DTAGRLHN   LM  + K++RV+ +LD  APH V+ VLD
Sbjct: 233 ASVIFDALQAAQARNIDVLIADTAGRLHNKDNLMEELKKVVRVMGKLDQSAPHEVMLVLD 292

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQNAL Q + F    G +G+ +TK+DGTA+GG +  I     +P+ F+G+GE ++DL
Sbjct: 293 AGTGQNALAQADHFQQWVGVSGISLTKLDGTAKGGVIFAIAKKLGLPIRFIGIGEAVDDL 352

Query: 299 EPFVAKDF-SAVITGCLD 315
            PF A+ F  A+  G  D
Sbjct: 353 RPFEAEPFIEALFAGNED 370


>gi|117625742|ref|YP_859065.1| cell division protein FtsY [Escherichia coli APEC O1]
 gi|115514866|gb|ABJ02941.1| cell division protein FtsY [Escherichia coli APEC O1]
          Length = 498

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 196 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 255

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 256 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 314

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 315 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 374

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQN + Q ++
Sbjct: 375 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNGVSQAKL 434

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 435 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 489


>gi|296133560|ref|YP_003640807.1| signal recognition particle-docking protein FtsY [Thermincola sp.
           JR]
 gi|296032138|gb|ADG82906.1| signal recognition particle-docking protein FtsY [Thermincola
           potens JR]
          Length = 304

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/298 (44%), Positives = 194/298 (65%), Gaps = 3/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL +    T     E I  +++ R+ +D+ + EELE+ LI+SD+G+  A ++VEE
Sbjct: 1   MGFFSKLKEKLTKTREGFVEKIESLVTGRKKIDEELYEELEEALIQSDVGINTALELVEE 60

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   + V     L ++  E+I ++LM        +   +P+VI+VVGVNGVGKTT I
Sbjct: 61  LRRRVKERKVEDAAELKNILQEIITEVLMDDESRLELE-KGKPNVIMVVGVNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ ++   G KV+LAAGDTFR+AAIDQL+IW++R   D +  +  +D AA+ ++A + 
Sbjct: 120 GKLAYQIKVGGRKVLLAAGDTFRAAAIDQLEIWSNRVGCDIIKHKENADPAAVVFDAIQA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLIIDTAGRLH  S LM  + K+ RV+ R  P APH VL VLDATTGQNA+ Q
Sbjct: 180 ARARNIDVLIIDTAGRLHTKSNLMEELKKVYRVINREMPDAPHEVLLVLDATTGQNAISQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            ++F    G TG+++TK+DGTA+GG +I I     +PV  +GVGE I DL PF   +F
Sbjct: 240 AKLFGEAVGVTGIVLTKLDGTAKGGVIIGIKKELDVPVKLIGVGEQIEDLRPFKPGEF 297


>gi|288933155|ref|YP_003437214.1| signal recognition particle-docking protein FtsY [Klebsiella
           variicola At-22]
 gi|288887884|gb|ADC56202.1| signal recognition particle-docking protein FtsY [Klebsiella
           variicola At-22]
          Length = 507

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 205 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 264

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 265 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 323

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 324 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 383

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 384 RHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDASTGQNAISQAKL 443

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 444 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 498


>gi|289207356|ref|YP_003459422.1| signal recognition particle-docking protein FtsY [Thioalkalivibrio
           sp. K90mix]
 gi|288942987|gb|ADC70686.1| signal recognition particle-docking protein FtsY [Thioalkalivibrio
           sp. K90mix]
          Length = 347

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 188/301 (62%), Gaps = 2/301 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W ++L +G A T   L   +  +   R++DD + EELE+ L+ +D+G+   Q+I++ +  
Sbjct: 44  WFQRLRQGLAKTGQALGGDLKSLFR-RKIDDELFEELEERLLLADVGLDATQRIMDRITR 102

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   +++     L D  E  + ++L P+S+P +   + RP  ILVVG+NG GKTT IGKL
Sbjct: 103 EVKRRELDNADALMDALETAMVEILEPVSRPLDIPQAERPFSILVVGINGAGKTTTIGKL 162

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +  D G  V+LAAGDTFR+AA++QL+ W +R     +    G+D+A++ Y+  + AQA
Sbjct: 163 AHRFKDEGRSVLLAAGDTFRAAAVEQLQTWGERNGVPVIAQGTGADSASVVYDGLQAAQA 222

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D+LI DTAGRLH  + LM  + K+ RV+ RLD HAP  VL V+D  TGQNAL Q   
Sbjct: 223 RKTDILIADTAGRLHTQTNLMDEVRKVKRVMGRLDEHAPDEVLLVVDGGTGQNALSQARQ 282

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG+++TK+DGTA+GG L  +     +PV F+GVGE   DL+ F A+ F   + 
Sbjct: 283 FHEALGLTGIVVTKLDGTAKGGVLFALAEQLGVPVRFIGVGEKAEDLQRFDARAFVRALL 342

Query: 312 G 312
           G
Sbjct: 343 G 343


>gi|320104118|ref|YP_004179709.1| signal recognition particle-docking protein FtsY [Isosphaera
           pallida ATCC 43644]
 gi|319751400|gb|ADV63160.1| signal recognition particle-docking protein FtsY [Isosphaera
           pallida ATCC 43644]
          Length = 309

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 129/304 (42%), Positives = 189/304 (62%), Gaps = 8/304 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           SWI +L  G A T+  L     D+ S   R +D    E LE  L+++D+GV   ++++++
Sbjct: 3   SWIERLKAGLAKTAKLL-----DVRSWLGRTVDQSFLERLEAQLLQADVGVKATERLLQK 57

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVI 128
           +      K      + +  +ELI+ +      P    ++  P   +L+ GVNG GKTT +
Sbjct: 58  VKEGFEGKTADEDLLAFVKAELINLLTPAGGAPEAIRYAPTPPTTLLIAGVNGSGKTTSV 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+ ++   G  ++LAA DTFR+AA DQL +WA RT AD V  + G+D A++A++A  +
Sbjct: 118 AKLTHRIRSEGKSLVLAACDTFRAAAADQLAVWAQRTGADLVRGQTGADPASVAHDACDR 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A A+K DVL++DTAGRLH  + LM  + K+  VL+R  P+APH V  VLD T GQNA+RQ
Sbjct: 178 ALARKADVLMVDTAGRLHTQTHLMRELEKIRNVLQRKIPNAPHEVFLVLDGTAGQNAIRQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            EMF    G TG+I+TK+DGTA+GG  + I  T  +PV F+GVGEGI+DL+PF A++F A
Sbjct: 238 AEMFSKSIGCTGIILTKLDGTAKGGVAVAIRQTLDLPVRFIGVGEGIDDLQPFRAEEFVA 297

Query: 309 VITG 312
            + G
Sbjct: 298 SLFG 301


>gi|332090291|gb|EGI95389.1| signal recognition particle-docking protein FtsY [Shigella boydii
           3594-74]
          Length = 515

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 213 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 272

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 273 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 331

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 332 ARQFELQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 391

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 392 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 451

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 452 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 506


>gi|74316394|ref|YP_314134.1| signal recognition particle-docking protein FtsY [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055889|gb|AAZ96329.1| Cell division transporter substrate-binding protein FtsY
           [Thiobacillus denitrificans ATCC 25259]
          Length = 376

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/298 (41%), Positives = 188/298 (63%), Gaps = 4/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +SW ++L +G A T  +L   +  +    R++D  + EELE +LI +DIGV   Q +++ 
Sbjct: 74  VSWAQRLKQGLAKTRDRLGGQLAGLFGVGRKIDAELFEELETILITADIGVDATQALLDT 133

Query: 70  LLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K R         +   + + +  ML+PL  P +   +H+P ++++ GVNG GKTT I
Sbjct: 134 LQKKVRRENLTEASELQTALKQALIDMLLPLQAPLDVK-THKPFILMLAGVNGAGKTTTI 192

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K     GL V+LAAGDTFR+AA +QL++W +R     V  E G D+AA+ ++A + 
Sbjct: 193 GKLAKLYQAQGLSVLLAAGDTFRAAAREQLQVWGERNGVTVVSQEKG-DSAAVIFDAIQA 251

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  I K+ RV+++  P APH +L VLDA TGQNA+ Q
Sbjct: 252 ARARNIDVVLADTAGRLPTQLHLMEEIRKVKRVIEKAIPGAPHEILLVLDANTGQNAVAQ 311

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           V+ F    G +GL++TK+DGTA+GG +  +     +PV ++GVGE ++DL PF A+DF
Sbjct: 312 VKAFDDALGVSGLVLTKLDGTAKGGAIAAVAQARPLPVRYIGVGETVDDLRPFDARDF 369


>gi|168235165|ref|ZP_02660223.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194736508|ref|YP_002116506.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194712010|gb|ACF91231.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197291314|gb|EDY30666.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|322614063|gb|EFY10999.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617955|gb|EFY14848.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625431|gb|EFY22257.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629896|gb|EFY26669.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632215|gb|EFY28966.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636434|gb|EFY33141.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643095|gb|EFY39669.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644710|gb|EFY41246.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651268|gb|EFY47652.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322652819|gb|EFY49158.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659121|gb|EFY55373.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663177|gb|EFY59381.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668664|gb|EFY64817.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674533|gb|EFY70626.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678262|gb|EFY74323.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682482|gb|EFY78503.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684195|gb|EFY80201.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192250|gb|EFZ77482.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196323|gb|EFZ81475.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201875|gb|EFZ86938.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206418|gb|EFZ91379.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212011|gb|EFZ96838.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216916|gb|EGA01639.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222316|gb|EGA06699.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224330|gb|EGA08619.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228258|gb|EGA12389.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233474|gb|EGA17567.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237064|gb|EGA21131.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243721|gb|EGA27737.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246037|gb|EGA30024.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323250813|gb|EGA34691.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323257691|gb|EGA41377.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323261900|gb|EGA45467.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267708|gb|EGA51190.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323268588|gb|EGA52055.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 491

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY + +  + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKGEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|157829036|ref|YP_001495278.1| cell division protein ftsY [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933760|ref|YP_001650549.1| signal recognition particle-docking protein FtsY [Rickettsia
           rickettsii str. Iowa]
 gi|157801517|gb|ABV76770.1| cell division protein ftsY [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908847|gb|ABY73143.1| cell division protein [Rickettsia rickettsii str. Iowa]
          Length = 303

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/303 (43%), Positives = 190/303 (62%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD    E LE+LLI SD+ V V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEALEELLISSDMSVLVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L     PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAKLIEQQLSKSEIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AA++QL  WADR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HSVL V+DA TGQN   QV
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  
Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARN 299

Query: 310 ITG 312
           I G
Sbjct: 300 IVG 302


>gi|323162704|gb|EFZ48543.1| signal recognition particle-docking protein FtsY [Escherichia coli
           E128010]
          Length = 515

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 213 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 272

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 273 GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 331

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 332 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASIIFDAIQAAKA 391

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD   PH V+  +DA+TGQNA+ Q ++
Sbjct: 392 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVETPHEVMLTIDASTGQNAVSQAKL 451

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 452 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 506


>gi|310815518|ref|YP_003963482.1| signal recognition particle-docking protein FtsY
           [Ketogulonicigenium vulgare Y25]
 gi|308754253|gb|ADO42182.1| signal recognition particle-docking protein FtsY
           [Ketogulonicigenium vulgare Y25]
          Length = 317

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/313 (39%), Positives = 201/313 (64%), Gaps = 12/313 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-----------RRLDDGVREELEDLLIRSDIG 59
           +S   KL      +S +L  GI  I++            R +DD + EELE+LLI +D+G
Sbjct: 1   MSLFSKLKDRLFKSSTRLDAGIEGIVADAPAASAADEARRTVDDAMLEELEELLITADMG 60

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           V  A ++   +    + + ++ + +   ++  + +++ P+++P    +  +P V+LVVGV
Sbjct: 61  VETATRVTANIGDALHGRRLTTREIKEALAREVGRIMEPVARPLPI-YPKKPQVVLVVGV 119

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+ +   AG +V++AAGDTFR+AA++QL++W +R     + +  GSD A
Sbjct: 120 NGSGKTTTIGKLASQFKAAGKQVVVAAGDTFRAAAVEQLQVWGERAGVPVLTAPEGSDPA 179

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           +LA++A  +A+    D+L+IDTAGRL N   LM  + K++RV+++ DP APH+ L VLDA
Sbjct: 180 SLAFDAMTRAEEIGADLLLIDTAGRLQNRQDLMEELAKIVRVIRKKDPSAPHNTLLVLDA 239

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ QV++F  +A  +GL+MTK+DGTARGG L+ +     +P++ +G+GE I+DL 
Sbjct: 240 TTGQNAVMQVDIFRKIADVSGLVMTKLDGTARGGVLVALADKFGLPIHAIGLGEQIDDLA 299

Query: 300 PFVAKDFSAVITG 312
           PF  ++F+  + G
Sbjct: 300 PFDPQEFARALCG 312


>gi|306820822|ref|ZP_07454446.1| cell division protein FtsY [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551140|gb|EFM39107.1| cell division protein FtsY [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 395

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/294 (43%), Positives = 192/294 (65%), Gaps = 5/294 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L +G   TS    E   ++     ++DD + EELE++LI SDI      KIVE L    
Sbjct: 99  RLKEGLKKTSDSFTEKFDNLFKGYLKIDDDLYEELEEILITSDISFDTTLKIVENLKKNI 158

Query: 75  YAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             K++  V  V  ++ E+++++L   +     D  ++ ++I++VGVNGVGKTT IGKL+ 
Sbjct: 159 KKKNINDVNLVKPELKEVLYELLENNNSKL--DVENQKNIIVIVGVNGVGKTTTIGKLAS 216

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAK 192
           K  + G  V+LAAGDTFR+AA +QL+IW+ R   D V  +E G+D +A+ Y+A ++A++K
Sbjct: 217 KFKNEGKSVLLAAGDTFRAAAEEQLEIWSTRAGVDIVRHNESGADPSAVIYDAIQRAKSK 276

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D+LI DTAGRLHN   LM  + K++R++ +  P A   VL V+DATTGQNAL QV+ F
Sbjct: 277 NTDILICDTAGRLHNKVNLMNELSKIMRIIGKQYPDAKKEVLLVIDATTGQNALNQVKTF 336

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +     TG+I+TK+DGTA+GG ++ IV  +K+PV F+GVGE ++DL+ F  K+F
Sbjct: 337 NEAVELTGVILTKLDGTAKGGVVLSIVDEYKLPVKFIGVGEKVDDLQEFDYKNF 390


>gi|29655188|ref|NP_820880.1| cell division protein [Coxiella burnetii RSA 493]
 gi|154706782|ref|YP_001423641.1| cell division protein [Coxiella burnetii Dugway 5J108-111]
 gi|29542460|gb|AAO91394.1| cell division protein [Coxiella burnetii RSA 493]
 gi|154356068|gb|ABS77530.1| cell division protein [Coxiella burnetii Dugway 5J108-111]
          Length = 324

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 129/310 (41%), Positives = 195/310 (62%), Gaps = 4/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61
           N + +     W+ +L +    T  +L +G+++++  ++ +D  + EELE +L+ +DIG+ 
Sbjct: 14  NNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGIE 73

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             Q I+  L  +   K +S  + L D  ++ +  +L P  K  + + S  P VIL VGVN
Sbjct: 74  ATQSILNNLSQQVARKSLSDPKALIDALKIELLNILEPCQK--HLEISASPFVILTVGVN 131

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT I KL+        +VMLAAGDTFR+AAI+QL+ W  R +A  +  + G+D+A+
Sbjct: 132 GVGKTTTIAKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVIAQQPGADSAS 191

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A + A A+  D+LI DTAGRLH  S LM  + K+ RV+K+++P APH  L VLDA 
Sbjct: 192 VIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDAG 251

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q E FH   G TG+ +TK+DGTA+GG +  I    ++P+ F+G+GE I DL+P
Sbjct: 252 TGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLKP 311

Query: 301 FVAKDFSAVI 310
           F AK+F A +
Sbjct: 312 FNAKEFIAAL 321


>gi|297172255|gb|ADI23233.1| hypothetical protein [uncultured nuHF2 cluster bacterium
           HF0770_13K08]
          Length = 457

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 123/300 (41%), Positives = 188/300 (62%), Gaps = 1/300 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +++ +L KG   T  +L + + + +  R+ +++ + ++LE++LI SDIG    Q+I++ +
Sbjct: 156 TFLERLRKGVVKTRTQLLDNLAEAVLGRKEINEDLLDDLEEVLIGSDIGPETTQRILDAI 215

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K   +++S  +VL    +L  + +M  +         +P ++L VGVNGVGKTT IGK
Sbjct: 216 TEKVEREELSSPQVLQSEIQLEIQKIMSKTYAVPGTAERKPLILLFVGVNGVGKTTTIGK 275

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +    G KV++ AGDTFR+AAI+QL  W+ R   D +  E GSD +A+ YE  ++  
Sbjct: 276 IAAQYRQQGKKVLMGAGDTFRAAAIEQLVEWSKRADCDIIQKEPGSDPSAVMYETVQKGI 335

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+I DTAGRLH    LM  + KM+RV+++L P APH +L VLDATTGQNA+ Q  
Sbjct: 336 DEDYDVVICDTAGRLHTKKNLMEELKKMVRVIRKLIPDAPHEILLVLDATTGQNAIFQTR 395

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TGLI+TK+DGT++GG +I IV    IPV ++GVGE + DL PF A+ F+  I
Sbjct: 396 EFMEATDLTGLIITKLDGTSKGGVVIGIVNEFDIPVRYIGVGEQVEDLRPFDAQQFTESI 455


>gi|325267267|ref|ZP_08133929.1| cell division protein FtsY [Kingella denitrificans ATCC 33394]
 gi|324981204|gb|EGC16854.1| cell division protein FtsY [Kingella denitrificans ATCC 33394]
          Length = 521

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/317 (41%), Positives = 190/317 (59%), Gaps = 9/317 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q    E L+W  +L +G   +   + + +  +    ++D+ + EELE +L+ SD+G+   
Sbjct: 208 QPEEEEPLNWTARLVRGLDKSRNHMAKSLAGVFGGGKIDEDLYEELETVLLTSDMGIEAT 267

Query: 64  Q---KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +   K V E ++ R  KD    R    + E I+ +L PL KP     + +P VI++ G+N
Sbjct: 268 EHLMKEVRERVSLRGLKDGKELR--QALKEAIYDLLKPLEKPLVLPENGQPFVIMMAGIN 325

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+K     G  VMLAAGDTFR+AA +QL+ W +R     +  E G D+AA
Sbjct: 326 GAGKTTSIGKLAKYFQKQGKSVMLAAGDTFRAAAREQLQEWGERNGVVVISQEKG-DSAA 384

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+K+DV++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA 
Sbjct: 385 VCFDAVEAAKARKIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIIVVLDAN 444

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNA+ QV  F    G TGLI+TK+DGTA+GG L  +  +  IPV F+GVGE I+DL P
Sbjct: 445 IGQNAVNQVVAFDDALGVTGLIVTKLDGTAKGGVLAALASSRAIPVRFIGVGERIDDLRP 504

Query: 301 FVAKDFSAVITGCLDYG 317
           F A+ F   +   LD G
Sbjct: 505 FNARAF---VDALLDEG 518


>gi|261341956|ref|ZP_05969814.1| cell division protein FtsY [Enterobacter cancerogenus ATCC 35316]
 gi|288315865|gb|EFC54803.1| cell division protein FtsY [Enterobacter cancerogenus ATCC 35316]
          Length = 497

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 254

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 255 GASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 313

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + A+A
Sbjct: 314 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVIFDAIQAAKA 373

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH ++  +DA+TGQNA+ Q ++
Sbjct: 374 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTIDASTGQNAVSQAKL 433

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 434 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488


>gi|153824163|ref|ZP_01976830.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           B33]
 gi|126518315|gb|EAZ75540.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           B33]
          Length = 303

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 121/291 (41%), Positives = 188/291 (64%), Gaps = 1/291 (0%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L    + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L  +   
Sbjct: 4   LKAQLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASR 63

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGKL+K+ 
Sbjct: 64  QQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQF 123

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+A+ +D
Sbjct: 124 QAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAKARGID 183

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q ++F  V
Sbjct: 184 VVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDV 243

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 244 APITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 294


>gi|88705467|ref|ZP_01103178.1| signal recognition particle-docking protein FtsY [Congregibacter
           litoralis KT71]
 gi|88700557|gb|EAQ97665.1| signal recognition particle-docking protein FtsY [Congregibacter
           litoralis KT71]
          Length = 341

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 129/296 (43%), Positives = 186/296 (62%), Gaps = 3/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G   TS  L  G  ++   R+ +D  + EELE  L+ +D+G+    +I+E L 
Sbjct: 39  FFGRLKRGLGRTSDSLAAGFGNLFLGRKTIDAELLEELESQLLIADVGIEATSEIIEHLT 98

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   K++S    L   + E +  +L+P  + F+      P VIL+VGVNGVGKTT IGK
Sbjct: 99  ERVSRKELSDPEALMQALREELQSILLPCQQSFDVSVGT-PFVILMVGVNGVGKTTTIGK 157

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+++  D G  VMLAAGDTFR+AA++QL+ W +R     +    G+D+A++ ++A + A 
Sbjct: 158 LARRFQDEGRSVMLAAGDTFRAAAVEQLQHWGERHDVPVIAQHTGADSASVIFDALQAAT 217

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DVLI DTAGRL N S LM  + K++RVL +L+P APH V+ VLDA TGQNAL Q  
Sbjct: 218 ARGIDVLIADTAGRLSNKSHLMDELSKVVRVLGKLNPEAPHEVMLVLDAGTGQNALAQAA 277

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F    G TGL +TK+DGTA+GG +  I     +P+ F+GVGE   DL PFVA++F
Sbjct: 278 QFREAVGVTGLTLTKLDGTAKGGVIFAIARRLGLPIRFIGVGESAEDLRPFVAEEF 333


>gi|260599765|ref|YP_003212336.1| cell division protein ftsY [Cronobacter turicensis z3032]
 gi|260218942|emb|CBA34297.1| Cell division protein ftsY [Cronobacter turicensis z3032]
          Length = 327

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 188/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 25  FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVDTTRKIIANLTE 84

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  E +  +L  + +P + +  + P VIL+VGVNGVGKTT IGKL
Sbjct: 85  GASRKQLRDAEALYGLLKEEMGDILAKVDEPLSVE-GNTPFVILMVGVNGVGKTTTIGKL 143

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 144 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 203

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD +APH V+  +DA+TGQNA+ Q ++
Sbjct: 204 RGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEVMLTIDASTGQNAVSQAKL 263

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 264 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDF 318


>gi|146313500|ref|YP_001178574.1| cell division protein FtsY [Enterobacter sp. 638]
 gi|145320376|gb|ABP62523.1| signal recognition particle-docking protein FtsY [Enterobacter sp.
           638]
          Length = 511

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/295 (41%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 209 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIASLTE 268

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGK+
Sbjct: 269 GASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKM 327

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 328 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 387

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH ++  LDA+TGQNA+ Q ++
Sbjct: 388 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTLDASTGQNAISQAKL 447

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF + DF
Sbjct: 448 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKSDDF 502


>gi|157149052|ref|YP_001456371.1| cell division protein FtsY [Citrobacter koseri ATCC BAA-895]
 gi|157086257|gb|ABV15935.1| hypothetical protein CKO_04891 [Citrobacter koseri ATCC BAA-895]
          Length = 500

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 198 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 257

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + +  +L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 258 GASRKQLHDAEALYGLLKDEMGDILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 316

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 317 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 376

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 377 RNVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTGQNAISQAKL 436

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 437 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 491


>gi|296105156|ref|YP_003615302.1| cell division protein FtsY [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059615|gb|ADF64353.1| cell division protein FtsY [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 485

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/295 (41%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 183 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 242

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 243 GASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 301

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A++
Sbjct: 302 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKS 361

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH ++  +DA+TGQNA+ Q ++
Sbjct: 362 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTIDASTGQNAVSQAKL 421

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 422 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 476


>gi|149278721|ref|ZP_01884857.1| signal recognition particle-docking protein FtsY [Pedobacter sp.
           BAL39]
 gi|149230716|gb|EDM36099.1| signal recognition particle-docking protein FtsY [Pedobacter sp.
           BAL39]
          Length = 320

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/301 (44%), Positives = 186/301 (61%), Gaps = 17/301 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T       IT  ++ +  +DD V + LE++L+ SD+GV    KI+E +   R 
Sbjct: 20  LDKGLEKTKEGFLSKITKAVAGKSTVDDDVLDNLEEVLVTSDVGVTTTLKIIERI-QDRV 78

Query: 76  AKDVSVQRVLYDVSELIH----KMLMPLSKPFNWDF------SHRPHVILVVGVNGVGKT 125
           AKD  +       +EL H    ++ + LS+  + DF       H+P+VI+VVGVNGVGKT
Sbjct: 79  AKDKYLS-----TTELNHLLRDEIQLLLSENNSNDFRKFEYGQHKPYVIMVVGVNGVGKT 133

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKLS K+   GLKV+L A DTFR+AA++Q+K+W +R     V   +GSD A++A++ 
Sbjct: 134 TTIGKLSHKLKAEGLKVVLGAADTFRAAAVEQIKLWGERVGVRVVAQAMGSDPASVAFDT 193

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A A   DV+IIDTAGRLHN   LM  +GK+  V++++ P APH +L VLD +TGQNA
Sbjct: 194 LQSAVANGEDVVIIDTAGRLHNKIGLMNELGKIKHVMEKVIPSAPHEILLVLDGSTGQNA 253

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
             Q + F        L +TK+DGTA+GG +I I    KIPV ++GVGEG+NDL+ F  K 
Sbjct: 254 FEQCKQFTEATDVNALAITKLDGTAKGGVVIGISDQFKIPVKYIGVGEGMNDLQLFDKKA 313

Query: 306 F 306
           F
Sbjct: 314 F 314


>gi|161505886|ref|YP_001572998.1| cell division protein FtsY [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867233|gb|ABX23856.1| hypothetical protein SARI_04065 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 497

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 186/299 (62%), Gaps = 10/299 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 195 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 254

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
               K +     LY     ++ E++ K+  PL+          P VIL+VGVNGVGKTT 
Sbjct: 255 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLTIE-----GKTPFVILMVGVNGVGKTTT 309

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A +
Sbjct: 310 IGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ 
Sbjct: 370 AAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVS 429

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 430 QAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 488


>gi|317046490|ref|YP_004114138.1| signal recognition particle-docking protein FtsY [Pantoea sp.
           At-9b]
 gi|316948107|gb|ADU67582.1| signal recognition particle-docking protein FtsY [Pantoea sp.
           At-9b]
          Length = 454

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/300 (42%), Positives = 189/300 (63%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   ++I+  L  
Sbjct: 152 FFARLKRSLVKTRANLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRRIITNLTQ 211

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +   K +     LY     +++ ++ K+  PL      D S + P VIL+VGVNGVGKTT
Sbjct: 212 QADRKQLRDAEALYGLLKTEMAGILDKVDAPL------DVSGKTPFVILMVGVNGVGKTT 265

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A 
Sbjct: 266 TIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 325

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ VDVLI DTAGRL N S LM  + K+ RV+K+LD  APH V+  +DA+TGQNA+
Sbjct: 326 QAAKARNVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDEDAPHEVMLTIDASTGQNAI 385

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF A DF
Sbjct: 386 SQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFKAADF 445


>gi|317494587|ref|ZP_07953000.1| signal recognition particle-docking protein FtsY
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917517|gb|EFV38863.1| signal recognition particle-docking protein FtsY
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 603

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/296 (42%), Positives = 191/296 (64%), Gaps = 4/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV    KI++ L  
Sbjct: 301 FFARLKRSLLKTKQNLGSGFFGLFRGKKIDDDLFEELEEQLLIADVGVETTSKIIKSLTE 360

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
               K++     LY  + E + ++L  + KP   D S R P VIL+VGVNGVGKTT IGK
Sbjct: 361 HASRKELKDAESLYGKLKEEMGEILSTVDKPL--DVSGRTPFVILMVGVNGVGKTTTIGK 418

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+++    G  VMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ ++A + A+
Sbjct: 419 LARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSASVIFDAIQAAK 478

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VDVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q +
Sbjct: 479 ARNVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTGQNAVSQAK 538

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F+   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF A DF
Sbjct: 539 LFNEAVGLTGITLTKLDGTAKGGVIFAVADQFGIPIRYIGVGEGIEDLRPFKADDF 594


>gi|297539226|ref|YP_003674995.1| signal recognition particle-docking protein FtsY [Methylotenera sp.
           301]
 gi|297258573|gb|ADI30418.1| signal recognition particle-docking protein FtsY [Methylotenera sp.
           301]
          Length = 333

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/308 (41%), Positives = 191/308 (62%), Gaps = 7/308 (2%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++  +VA++S  W  +L +  + T  +L   +  +    ++D  V EELE +LI SD+GV
Sbjct: 25  LTEAQVAAQS--WSERLKQSLSKTRKQLGNQLASLFGGGKIDAEVYEELETILITSDVGV 82

Query: 61  AVAQKIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
              + ++ ++    K  + D +VQ +   + E +  +L PL KP +     +P VI++ G
Sbjct: 83  NATKNLLADIKNRVKVQSLDDTVQ-LKAALKEAMSDLLTPLQKPLDTS-GQKPFVIMLAG 140

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT IGKL+      G  V++AAGDTFR+AA +QL+IW +R +   V S+   DA
Sbjct: 141 VNGAGKTTSIGKLAHAFQAEGKSVLIAAGDTFRAAAREQLQIWGERNNV-HVVSQTSGDA 199

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   A+AK +D+++ DTAGRL     LM  I K+ RV+ +  P APH VL VLD
Sbjct: 200 AAVMFDAINSAKAKNIDIVLADTAGRLPTQMHLMDEIAKVKRVMDKALPGAPHEVLLVLD 259

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQNA+ QV+ F    G TGL+++K+DGTA+GG +  I     IP+ ++G+GEGI+DL
Sbjct: 260 ANTGQNAVTQVKTFDDALGVTGLVLSKLDGTAKGGVIAAIAEARPIPIRYIGIGEGIDDL 319

Query: 299 EPFVAKDF 306
            PF+A DF
Sbjct: 320 RPFIAADF 327


>gi|253722851|pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
          Length = 295

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 123/284 (43%), Positives = 183/284 (64%), Gaps = 2/284 (0%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L      K +    
Sbjct: 6   TKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAE 65

Query: 84  VLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
            LY +  E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL+++    G  V
Sbjct: 66  ALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSV 124

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           MLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A+ +DVLI DTA
Sbjct: 125 MLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTA 184

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++FH   G TG+ 
Sbjct: 185 GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGIT 244

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 245 LTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 288


>gi|296108316|ref|YP_003620017.1| signal recognition particle receptor [Legionella pneumophila
           2300/99 Alcoy]
 gi|295650218|gb|ADG26065.1| signal recognition particle receptor [Legionella pneumophila
           2300/99 Alcoy]
          Length = 355

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/309 (43%), Positives = 189/309 (61%), Gaps = 3/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           K  S   S   +  KG + T  +L EGI+ ++   + +   + EELE LLI +D+G+   
Sbjct: 41  KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121
           Q ++++L      K +S    +Y   +  +  +L    KP + +     P VIL+VGVNG
Sbjct: 101 QDVLKQLNEGLARKQLSNGEAVYQTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 160

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL +W +R     +    G+D+A++
Sbjct: 161 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+K+D+LI DTAGRLH  S LM  + K+ RV+++LDP APH  + VLDA+ 
Sbjct: 221 IFDALQAAKARKIDILIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + FH     TG+ MTK+DGTA+GG L  I     IP  +LGVGEGI DL PF
Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340

Query: 302 VAKDFSAVI 310
            A  F + I
Sbjct: 341 DAAQFVSAI 349


>gi|15604608|ref|NP_221126.1| cell division protein FTSY (ftsY) [Rickettsia prowazekii str.
           Madrid E]
 gi|6016061|sp|O05948|FTSY_RICPR RecName: Full=Cell division protein ftsY homolog
 gi|2073477|emb|CAA72477.1| cell division protein [Rickettsia prowazekii]
 gi|3861303|emb|CAA15202.1| CELL DIVISION PROTEIN FTSY (ftsY) [Rickettsia prowazekii]
 gi|292572424|gb|ADE30339.1| Signal recognition particle-docking protein FtsY [Rickettsia
           prowazekii Rp22]
          Length = 303

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 189/303 (62%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           ++   KL +  + TS  +  GI  I   R+LD     ELE+LLI SDI ++V   I+EE 
Sbjct: 2   ITIFNKLKQSLSKTSNTISAGIDKIFYKRKLDKETLNELEELLISSDISISVVTHIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K +    V   +++LI + L     PF     ++ ++ILV GVNGVGKTT IGK
Sbjct: 62  KNVKFDKTIDSDTVKEAIAKLIEQQLSKSEIPFTLS-ENKLNIILVCGVNGVGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS   S  G KV +AA DTFR+AAI+QL  W  R +A  +  +  +D A++AY A +++ 
Sbjct: 121 LSALYSAEGKKVAVAACDTFRAAAINQLSSWVHRANALLITGKASADPASVAYRAIEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
            + +D+L IDTAGRLHNN  LM  + K+++V+K+LD +AP HS+L ++DA TGQN   Q+
Sbjct: 181 KQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSIL-IIDAITGQNTYNQI 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+ V   TGLI+TK+DG+A+ G L+  V    +PVYF+G+GE I DL+ F   DFS  
Sbjct: 240 EYFNDVTNLTGLIVTKLDGSAKAGVLVGAVQKFNLPVYFIGIGEKIEDLKIFNRHDFSRS 299

Query: 310 ITG 312
           + G
Sbjct: 300 LVG 302


>gi|332968151|gb|EGK07234.1| cell division protein FtsY [Kingella kingae ATCC 23330]
          Length = 545

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 190/304 (62%), Gaps = 14/304 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           SL W  +L +G + +  ++ + +  +    ++D+ + EELE +LI SD+G+   ++++ E
Sbjct: 239 SLGWTARLARGLSKSRNQMAKSLAGVFGGGKIDEDLYEELETVLITSDMGIEATEQLMNE 298

Query: 70  LLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +  +     VS+ + L D +EL       I+ +L PL +P     + +P VI++ G+NG 
Sbjct: 299 VRNR-----VSL-KGLKDGAELRSALKDAIYDLLKPLDQPLVLPDNGQPFVIMMAGINGA 352

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K     G  VMLAAGDTFR+AA +QL+ W  R +   +  E G D+AA+ 
Sbjct: 353 GKTTSIGKLAKYFQSQGKSVMLAAGDTFRAAAREQLQEWGARNNVTVISQEKG-DSAAVC 411

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+K+DV++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  G
Sbjct: 412 FDAVEAAKARKIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIMVVLDANIG 471

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ QV  F    G TGLI+TK+DGTA+GG L  +  +  IPV ++GVGE I+DL PF 
Sbjct: 472 QNAVNQVVAFDDALGVTGLIVTKLDGTAKGGVLAALASSRAIPVRYIGVGESIDDLRPFN 531

Query: 303 AKDF 306
           AK F
Sbjct: 532 AKAF 535


>gi|294669442|ref|ZP_06734519.1| signal recognition particle-docking protein FtsY [Neisseria
           elongata subsp. glycolytica ATCC 29315]
 gi|291308646|gb|EFE49889.1| signal recognition particle-docking protein FtsY [Neisseria
           elongata subsp. glycolytica ATCC 29315]
          Length = 500

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 192/304 (63%), Gaps = 2/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++  +E+  W  +L +G + +  K+ + +  +    ++D+ + EELE +L+ SD+G+   
Sbjct: 191 EEQPAETGGWTARLKQGLSKSRDKMAKSLAGVFGGGKIDEDLYEELETVLLTSDMGIEAT 250

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + +++E+  +   K +S  R L   + E ++ +L PL KP     + +P VI++ G+NG 
Sbjct: 251 EHLMDEVRRRVSLKGLSDGRELRQALKEAVYDLLSPLEKPLEIPDNGQPFVIMMAGINGA 310

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R     V S++  D+AA+ 
Sbjct: 311 GKTTSIGKLAKYFQSQGKSVILAAGDTFRAAAREQLQEWGERNGV-TVISQVKGDSAAVC 369

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+K+D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  G
Sbjct: 370 FDAVEAAKARKIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIIVVLDANIG 429

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ QV  F    G TGLI+TK+DGTA+GG L  +  +  IPV ++GVGE I+DL PF 
Sbjct: 430 QNAVGQVAAFDDTLGVTGLIVTKLDGTAKGGVLAALASSRPIPVRYIGVGEKIDDLRPFD 489

Query: 303 AKDF 306
           A+ F
Sbjct: 490 ARAF 493


>gi|295097062|emb|CBK86152.1| signal recognition particle-docking protein FtsY [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 486

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 122/295 (41%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 184 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 243

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 244 GASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKMPFVILMVGVNGVGKTTTIGKL 302

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A++
Sbjct: 303 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKS 362

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH ++  +DA+TGQNA+ Q ++
Sbjct: 363 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTIDASTGQNAISQAKL 422

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 423 FHEAVGLTGIALTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 477


>gi|307611546|emb|CBX01226.1| hypothetical protein LPW_29241 [Legionella pneumophila 130b]
          Length = 355

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/309 (43%), Positives = 189/309 (61%), Gaps = 3/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           K  S   S   +  KG + T  +L EGI+ ++   + +   + EELE LLI +D+G+   
Sbjct: 41  KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121
           Q ++++L      K +S    +Y   +  +  +L    KP + +     P VIL+VGVNG
Sbjct: 101 QDVLKQLNEGLARKQLSNGDAVYQTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 160

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL +W +R     +    G+D+A++
Sbjct: 161 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+K+DVLI DTAGRLH  S LM  + K+ RV+++LDP APH  + VLDA+ 
Sbjct: 221 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + FH     TG+ MTK+DGTA+GG L  I     IP  +LGVGEGI DL PF
Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340

Query: 302 VAKDFSAVI 310
            A  F + I
Sbjct: 341 DAAQFVSAI 349


>gi|255533405|ref|YP_003093777.1| signal recognition particle-docking protein FtsY [Pedobacter
           heparinus DSM 2366]
 gi|255346389|gb|ACU05715.1| signal recognition particle-docking protein FtsY [Pedobacter
           heparinus DSM 2366]
          Length = 320

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/301 (43%), Positives = 187/301 (62%), Gaps = 17/301 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T       IT  ++ +  +DD V + LE++L+ SD+GV+   KI+E +  +R 
Sbjct: 20  LDKGLEKTKEGFFSKITKAVAGKSSIDDDVLDNLEEVLVTSDVGVSTTLKIIERI-EQRV 78

Query: 76  AKDVSVQRVLYDVSELIH----KMLMPLSKPFNWDF------SHRPHVILVVGVNGVGKT 125
           AKD  +       +EL H    ++ + L++  + DF       H+P+VI+VVGVNGVGKT
Sbjct: 79  AKDKYLS-----TTELNHLLRDEIQLLLAENNSNDFRQFEYGQHKPYVIMVVGVNGVGKT 133

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K+    LKV+L A DTFR+AA++Q+K+W +R     V   +GSD A++AY+ 
Sbjct: 134 TTIGKLAHKLKAENLKVVLGAADTFRAAAVEQIKLWGERVGVRVVAQAMGSDPASVAYDT 193

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A A   DV+IIDTAGRLHN   LM  +GK+  V++++ P APH +L VLD +TGQNA
Sbjct: 194 LQSAVANGEDVVIIDTAGRLHNKVGLMNELGKIKNVMQKVIPSAPHEILLVLDGSTGQNA 253

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
             Q + F        L +TK+DGTA+GG +I I    KIPV ++GVGEG+NDL+ F  K 
Sbjct: 254 FEQCKQFTEATDVNALAITKLDGTAKGGVVIGISDQFKIPVKYIGVGEGMNDLQLFDKKA 313

Query: 306 F 306
           F
Sbjct: 314 F 314


>gi|158521729|ref|YP_001529599.1| signal recognition particle-docking protein FtsY [Desulfococcus
           oleovorans Hxd3]
 gi|158510555|gb|ABW67522.1| signal recognition particle-docking protein FtsY [Desulfococcus
           oleovorans Hxd3]
          Length = 381

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/297 (44%), Positives = 186/297 (62%), Gaps = 11/297 (3%)

Query: 16  KLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L +G   T   L   +  + +  ++LDD   E+LE+LLI +DIGV    +++  L +K+
Sbjct: 85  RLRRGLEKTRRFLTTDVDKLFVPGKKLDDQTLEDLEELLITADIGVKATTELIAGL-SKQ 143

Query: 75  YAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFSHRP----HVILVVGVNGVGKTTVIG 129
            A       +     E I +M++P L      D + RP    HVI+V+GVNGVGKTT IG
Sbjct: 144 AAGITDPDHL----KEAIKEMILPYLEDDRPTDEATRPLATPHVIMVIGVNGVGKTTTIG 199

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVML A DTFR+AAI+QL IWADRT AD +     SD AA+AY+  + A
Sbjct: 200 KLAARHRANGKKVMLVAADTFRAAAIEQLSIWADRTGADILKHRENSDPAAVAYDGVEAA 259

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ VDV+I+DTAGRLH    LM  + K+ R + +  P APH VL VLDATTGQNA+ Q 
Sbjct: 260 RARGVDVVIVDTAGRLHTKVNLMEELKKIKRSMSKTMPDAPHEVLLVLDATTGQNAISQT 319

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           E+F   A  TG+++TK+DGTA+GG  I +  +  IP+ ++GVGE + DL+PF  + F
Sbjct: 320 ELFTKAADVTGIVLTKLDGTAKGGIAINLRHSFGIPIQYIGVGEQVEDLQPFDPRAF 376


>gi|332289253|ref|YP_004420105.1| cell division protein FtsY [Gallibacterium anatis UMN179]
 gi|330432149|gb|AEC17208.1| cell division protein FtsY [Gallibacterium anatis UMN179]
          Length = 431

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 121/295 (41%), Positives = 189/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +G   T   +  G   + S +++DD + EELE+ L+ +DIGV    KI++ L  
Sbjct: 127 FFSRLVQGLVKTKQNIGAGFRSLFSGKKIDDDLFEELEEQLLIADIGVPTTNKIIKNLTE 186

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +    +LY   ++ +  +L P  +P       +P VIL+VGVNGVGKTT IGKL
Sbjct: 187 HASRKQLKEAELLYQQLKVELATILKPNEQPLVLT-DKKPFVILMVGVNGVGKTTTIGKL 245

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A A
Sbjct: 246 AKQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQATGADSASVLFDAMQSATA 305

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VD+LI DTAGRL N + LM  + K++RV+K+ D +APH ++  LDA TGQNA+ Q+++
Sbjct: 306 KGVDILIADTAGRLQNKNNLMDELRKIVRVMKKYDENAPHEIMLTLDAGTGQNAISQMKL 365

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  +     +P+ ++GVGE I+DL PF +++F
Sbjct: 366 FNEAVGITGITLTKLDGTAKGGVIFALADQFNVPIRYIGVGEKIDDLRPFNSEEF 420


>gi|134096064|ref|YP_001101139.1| signal recognition particle receptor [Herminiimonas arsenicoxydans]
 gi|133739967|emb|CAL63018.1| Cell division protein FtsY homolog [Herminiimonas arsenicoxydans]
          Length = 408

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 185/307 (60%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A +  SW+ +L  G + TS      +T +    ++D+ + EELE  L+ SD GV   Q +
Sbjct: 108 AEQKQSWMARLKVGLSKTS----SNLTTLFVGAKIDEDLYEELESALLMSDAGVDATQFL 163

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + EL  K R  K     +V   +  L+ +ML PL KP      H+P V+++ GVNG GKT
Sbjct: 164 LTELKRKVRNEKLTEAAQVKTALRSLLLEMLTPLQKPLVLG-QHQPLVMMITGVNGAGKT 222

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   +  E G D AA+A++A
Sbjct: 223 TTIGKLAKHLQAHHQSVLLAAGDTFRAAAREQLTVWGERNNVTVIAQESG-DPAAVAFDA 281

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              AQA+  +V+++DTAGRL     LM  + K+ RV+ +    APH +L ++D  TGQNA
Sbjct: 282 VHSAQARGTNVVMVDTAGRLPTQLHLMEELKKIKRVIAKGMSSAPHEILLIIDGNTGQNA 341

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGL++TK+DGTA+GG L  I     IPVYF+GVGE I DL+PF A++
Sbjct: 342 LTQVKAFDDALGLTGLVVTKLDGTAKGGVLAAIARARPIPVYFIGVGEQIEDLQPFNAQE 401

Query: 306 FSAVITG 312
           F   + G
Sbjct: 402 FVEALLG 408


>gi|223043789|ref|ZP_03613832.1| cell division protein FtsY [Staphylococcus capitis SK14]
 gi|222442886|gb|EEE48988.1| cell division protein FtsY [Staphylococcus capitis SK14]
          Length = 419

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 184/299 (61%), Gaps = 12/299 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G     K+ +EL T+ 
Sbjct: 89  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEA 148

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             +++   +   D+ E+I + ++ +       S+  N +   R +VIL+VGVNGVGKTT 
Sbjct: 149 QRRNI---QETEDLREVIVEKIVEIYHQEDDHSEAMNLE-DGRLNVILMVGVNGVGKTTT 204

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G KVMLAAGDTFR+ AI QLK+W DR   + V    GSD AA+ Y+A  
Sbjct: 205 IGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLKVWGDRVGVEVVSQSEGSDPAAVVYDAIN 264

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LDATTGQNAL 
Sbjct: 265 AAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAIPDAPHEALLCLDATTGQNALS 324

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 QARSFKDVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNPESY 383


>gi|52842876|ref|YP_096675.1| cell division membrane protein FtsY [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629987|gb|AAU28728.1| cell division membrane protein FtsY [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 368

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/309 (43%), Positives = 189/309 (61%), Gaps = 3/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           K  S   S   +  KG + T  +L EGI+ ++   + +   + EELE LLI +D+G+   
Sbjct: 54  KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 113

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121
           Q ++++L      K +S    +Y  +   +  +L    KP + +     P VIL+VGVNG
Sbjct: 114 QDVLKQLNEGLARKQLSNGEAVYLTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 173

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL +W +R     +    G+D+A++
Sbjct: 174 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 233

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+K+DVLI DTAGRLH  S LM  + K+ RV+++LDP APH  + VLDA+ 
Sbjct: 234 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 293

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + FH     TG+ MTK+DGTA+GG L  I     IP  +LGVGEGI DL PF
Sbjct: 294 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 353

Query: 302 VAKDFSAVI 310
            A  F + I
Sbjct: 354 DAAQFVSAI 362


>gi|54295510|ref|YP_127925.1| hypothetical protein lpl2597 [Legionella pneumophila str. Lens]
 gi|53755342|emb|CAH16838.1| hypothetical protein lpl2597 [Legionella pneumophila str. Lens]
          Length = 355

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/309 (43%), Positives = 189/309 (61%), Gaps = 3/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           K  S   S   +  KG + T  +L EGI+ ++   + +   + EELE LLI +D+G+   
Sbjct: 41  KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121
           Q ++++L      K +S    +Y   +  +  +L    KP + +     P VIL+VGVNG
Sbjct: 101 QDVLKQLNEGLARKQLSNGDAVYQTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 160

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL +W +R     +    G+D+A++
Sbjct: 161 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+K+DVLI DTAGRLH  S LM  + K+ RV+++LDP APH  + VLDA+ 
Sbjct: 221 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + FH     TG+ MTK+DGTA+GG L  I     IP  +LGVGEGI DL PF
Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340

Query: 302 VAKDFSAVI 310
            A  F + I
Sbjct: 341 DAAQFVSAI 349


>gi|54298660|ref|YP_125029.1| hypothetical protein lpp2724 [Legionella pneumophila str. Paris]
 gi|53752445|emb|CAH13877.1| hypothetical protein lpp2724 [Legionella pneumophila str. Paris]
          Length = 355

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/309 (43%), Positives = 189/309 (61%), Gaps = 3/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           K  S   S   +  KG + T  +L EGI+ ++   + +   + EELE LLI +D+G+   
Sbjct: 41  KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121
           Q ++++L      K +S    +Y   +  +  +L    KP + +     P VIL+VGVNG
Sbjct: 101 QDVLKQLNEGLARKQLSNGEAVYQTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 160

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+K+    G +VMLAAGDTFR+AA++QL +W +R     +    G+D+A++
Sbjct: 161 AGKTTTIGKLAKQFQKQGKRVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+K+DVLI DTAGRLH  S LM  + K+ RV+++LDP APH  + VLDA+ 
Sbjct: 221 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + FH     TG+ MTK+DGTA+GG L  I     IP  +LGVGEGI DL PF
Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340

Query: 302 VAKDFSAVI 310
            A  F + I
Sbjct: 341 DAAQFVSAI 349


>gi|237747431|ref|ZP_04577911.1| signal recognition particle receptor [Oxalobacter formigenes
           HOxBLS]
 gi|229378782|gb|EEO28873.1| signal recognition particle receptor [Oxalobacter formigenes
           HOxBLS]
          Length = 354

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 125/297 (42%), Positives = 186/297 (62%), Gaps = 8/297 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L  G A TS  L     +I     +D+ + EELE  LI SD+G+   + +++ L 
Sbjct: 60  SWLSRLKAGLAKTSANL-----NIFGGTTIDEELFEELETALIVSDVGLPATEYLLDSLR 114

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K +  +      +  ++++L+  +L+PL K       H P ++++ GVNG GKTT IGK
Sbjct: 115 KKVKEERLTHPAEIKTELAKLLTDLLIPLQKSLEIG-RHTPLIVMMAGVNGAGKTTTIGK 173

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K + +    V+LAAGDTFR+AA +QL +W DR     +  E G D AA+A++A + A+
Sbjct: 174 LAKHLQNNDQTVLLAAGDTFRAAAREQLAVWGDRNKITVIAQESG-DPAAVAFDAVQSAK 232

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK ++V+++DTAGRL     LM  + K+ RV+ +    APH ++ V+D  TGQNAL QV+
Sbjct: 233 AKGINVVMVDTAGRLPTQLHLMEELRKVKRVIGKGMEEAPHEIILVIDGNTGQNALAQVK 292

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            F    G TGLI+TK+DGT +GG L  I   H +PVYF+GVGE I+DL+PFVA++FS
Sbjct: 293 AFDEALGLTGLIVTKLDGTPKGGILAAIAKNHPVPVYFIGVGEKIDDLQPFVAEEFS 349


>gi|314933413|ref|ZP_07840778.1| cell division protein FtsY [Staphylococcus caprae C87]
 gi|313653563|gb|EFS17320.1| cell division protein FtsY [Staphylococcus caprae C87]
          Length = 419

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 184/299 (61%), Gaps = 12/299 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G     K+ +EL T+ 
Sbjct: 89  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEA 148

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             +++   +   D+ E+I + ++ +       S+  N +   R +VIL+VGVNGVGKTT 
Sbjct: 149 QRRNI---QETEDLREVIVEKIVEIYHQEDDHSEAMNLE-DGRLNVILMVGVNGVGKTTT 204

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G KVMLAAGDTFR+ AI QLK+W DR   + V    GSD AA+ Y+A  
Sbjct: 205 IGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLKVWGDRVGVEVVSQSEGSDPAAVVYDAIN 264

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LDATTGQNAL 
Sbjct: 265 AAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRSIPDAPHEALLCLDATTGQNALS 324

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 QARSFKDVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNPESY 383


>gi|91775086|ref|YP_544842.1| signal recognition particle-docking protein FtsY [Methylobacillus
           flagellatus KT]
 gi|91709073|gb|ABE49001.1| signal recognition particle-docking protein FtsY [Methylobacillus
           flagellatus KT]
          Length = 335

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 120/298 (40%), Positives = 189/298 (63%), Gaps = 3/298 (1%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           SLSW  +L +  A T  +  + +  +    ++D+ V EELE +L+ SD+G+A  Q ++E+
Sbjct: 34  SLSWAERLKRSLAKTRSQWGQQLARLFGGGKIDENVYEELETILLTSDVGIAATQALLEQ 93

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           + T+   +++S    L + + + + ++L PL KP +   + +P VI++ GVNG GKTT I
Sbjct: 94  IRTRVKRQNLSDTTQLKEALKQSLLELLTPLEKPLD-TTTAQPFVIMLAGVNGAGKTTTI 152

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G  V++AAGDTFR+AA +QL+ W +R +   V  E G D AA+ ++A   
Sbjct: 153 GKLANLFQAQGKSVLIAAGDTFRAAAREQLQAWGERNNVHVVAQESG-DPAAVIFDAVNS 211

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +D+++ DTAGRL     LM  I K+ RV+ +  P APH VL VLD+ TGQNA+ Q
Sbjct: 212 AKARGIDIVLADTAGRLPTQLNLMEEIRKVQRVIDKALPGAPHEVLLVLDSNTGQNAVTQ 271

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           V+ F    G TGL+++K+DGTA+GG +  I  +  +P+ ++G+GE I+DL PF A +F
Sbjct: 272 VKAFDDALGVTGLVLSKLDGTAKGGVIAAIAQSRPVPIRYIGIGESIDDLRPFKASEF 329


>gi|169350200|ref|ZP_02867138.1| hypothetical protein CLOSPI_00944 [Clostridium spiroforme DSM 1552]
 gi|169292983|gb|EDS75116.1| hypothetical protein CLOSPI_00944 [Clostridium spiroforme DSM 1552]
          Length = 327

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 129/306 (42%), Positives = 191/306 (62%), Gaps = 11/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K   +S     K   G   +++   + I ++ +  R +++   EELE++LI SD+GV++
Sbjct: 9   EKFVGKSAKQNEKYVAGLDRSNVTFSDRINELAARFREINEDYFEELENILIMSDVGVSM 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM------PLSKPFNWDFSHRPHVILV 116
             KIV+E+  +   ++++  + + D+  ++ KM +       ++   N+  S    VIL+
Sbjct: 69  VMKIVDEIKNEVRIQNITDPKQINDI--IVDKMFVIYANDSVMTTKINY-ASEGLTVILM 125

Query: 117 VGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VGVNG GKTT IGKL+ ++  D G KVM+AAGDTFR+ AIDQL +WADR   + V    G
Sbjct: 126 VGVNGAGKTTTIGKLANRIVQDEGKKVMVAAGDTFRAGAIDQLAVWADRVGVEIVKGREG 185

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D +A+ ++A KQA+ K VDVLI DTAGRL N   LM  + KM R++KR  P APH  L 
Sbjct: 186 GDPSAVVFDALKQAKEKNVDVLICDTAGRLQNKVNLMKELEKMNRIIKREVPDAPHETLL 245

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN + Q   F  +   TGL++TKMDGTA+GG ++ I     IPV F+G+GEG+
Sbjct: 246 VIDATTGQNGVSQAVEFSKITDITGLVLTKMDGTAKGGIVLSIKDQLNIPVKFIGLGEGV 305

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 306 DDLQEF 311


>gi|114566315|ref|YP_753469.1| signal recognition particle GTPase-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337250|gb|ABI68098.1| signal recognition particle-docking protein FtsY [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 305

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 131/299 (43%), Positives = 187/299 (62%), Gaps = 7/299 (2%)

Query: 16  KLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL KG + T       I  ++ SS++LDD   EELE++LI++D+GV    ++V+ +  K+
Sbjct: 3   KLKKGLSKTRENTIGKIEALVKSSKKLDDDFWEELEEILIQADVGVNTTIELVDNI--KQ 60

Query: 75  YAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            AK   +     VL  + + + K+L   + P N        VILVVGVNG GKTT I KL
Sbjct: 61  AAKKQKMHDSSEVLELIKDEVRKLLEYNNVPLNIP-ERELAVILVVGVNGAGKTTSIAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +  + G KV+L A DTFR+AAIDQL IWADR   + +  + GSD  A+ ++A   A+A
Sbjct: 120 AYRFHEEGKKVLLGAADTFRAAAIDQLNIWADRVGVELIKHQEGSDPGAVVFDAIHAAKA 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+LIIDTAGRL N + LM  I K+  +++R  P APH VL VLDATTGQNA+ Q ++
Sbjct: 180 RHADILIIDTAGRLQNKANLMKEISKIKNIIQREIPEAPHEVLLVLDATTGQNAISQAKI 239

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           F    G TGLI++K+DGTA+GG ++ +    KIPV  +G+GEG+ DL  F  + F+  +
Sbjct: 240 FEEATGVTGLILSKLDGTAKGGIILAVEKELKIPVKLVGIGEGLEDLRDFSPQIFTEAL 298


>gi|68171797|ref|ZP_00545138.1| Cell division transporter substrate-binding protein FtsY [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88657689|ref|YP_507895.1| signal recognition particle-docking protein FtsY [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67998779|gb|EAM85490.1| Cell division transporter substrate-binding protein FtsY [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599146|gb|ABD44615.1| signal recognition particle-docking protein FtsY [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 310

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 129/306 (42%), Positives = 203/306 (66%), Gaps = 11/306 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +   + KG   TS KL +GI  I SS +++D    EEL++LLI +D+G   A  + ++L 
Sbjct: 9   FFSNIKKGLFKTSSKLSDGIKKIFSSGKKVDQETLEELKELLITADVGYDNASLLTQKLA 68

Query: 72  TKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           + ++ +  D +V++ L   +E I  +L+ + KP +   +++PHVI+V G NG GKTT IG
Sbjct: 69  STKFNEMDDNTVKQKL---AESIENILLQVEKPLS--INNKPHVIMVCGTNGNGKTTTIG 123

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +  + G KV++AA DTFR+AA +QL +W+ + +   V    G+DAA++AY+A +QA
Sbjct: 124 KLAHRFKNTGKKVLVAACDTFRAAATEQLIVWSQKVNFPVVTGNQGADAASIAYQAMQQA 183

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             ++ DVL+IDTAGRLHN+  LM  + K+ R++ + D +APH V+ +LDATTGQNA+ QV
Sbjct: 184 LNEQTDVLLIDTAGRLHNHKNLMEELAKIRRIINKHDNNAPHDVILILDATTGQNAVNQV 243

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      +GLI+TK+DGTA+GG +I I   +K+ ++ +G+GE +  L+ F AK+F+A 
Sbjct: 244 DAFLQFVNISGLIITKLDGTAKGGVVIRIAQKYKLNIHAIGIGESVEQLQDFSAKEFAA- 302

Query: 310 ITGCLD 315
             G LD
Sbjct: 303 --GLLD 306


>gi|327395607|dbj|BAK13029.1| cell division protein FtsY [Pantoea ananatis AJ13355]
          Length = 587

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   ++I+  L  
Sbjct: 285 FFARLKRSLVKTRQNLGSGFIGLFRGKKIDDELFEELEEQLLIADVGVETTRRIITSLTQ 344

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY + +  +  +L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 345 HADRKQLRDAEALYGLLKTEMADILAKVEEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 403

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + A++
Sbjct: 404 ARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNISVVAQHTGADSASVIFDAIQAAKS 463

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K+ RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 464 RGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDEQAPHEVMLTIDASTGQNAISQAKL 523

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF A+DF
Sbjct: 524 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFKAEDF 578


>gi|313112008|ref|ZP_07797795.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           39016]
 gi|310884297|gb|EFQ42891.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           39016]
          Length = 288

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 121/256 (47%), Positives = 171/256 (66%), Gaps = 3/256 (1%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR 110
           L+ +D+GV     IV+ L TKR A K+++    LY  + E +  +L P+ +P   D +  
Sbjct: 23  LLTADVGVEATTLIVQNL-TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVARE 81

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+VILVVGVNGVGKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +
Sbjct: 82  PYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVI 141

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G+D+A++ ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  AP
Sbjct: 142 AQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAP 201

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H VL VLDA TGQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++G
Sbjct: 202 HEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIG 261

Query: 291 VGEGINDLEPFVAKDF 306
           VGEGI+DL  F A  F
Sbjct: 262 VGEGIDDLRTFEADAF 277


>gi|225025030|ref|ZP_03714222.1| hypothetical protein EIKCOROL_01919 [Eikenella corrodens ATCC
           23834]
 gi|224942260|gb|EEG23469.1| hypothetical protein EIKCOROL_01919 [Eikenella corrodens ATCC
           23834]
          Length = 480

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 121/299 (40%), Positives = 187/299 (62%), Gaps = 6/299 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G + +  ++ + +  +    ++D+ + EELE +L+ SD+G+   + ++EE+
Sbjct: 180 LGWAARLKQGLSKSRQQMAKSLAGVFGGGKIDEDLYEELETVLLTSDMGIEATEHLMEEV 239

Query: 71  LTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             +   R  KD   + +   + E I++++ PL +P       RP VI++ G+NG GKTT 
Sbjct: 240 RQRVSLRGLKDG--EELRGALKEAIYELIKPLEQPLALPADKRPFVIMLAGINGAGKTTS 297

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K     G  V+LAAGDTFR+AA +QL  W +R     V S+   D+AA+ ++A +
Sbjct: 298 IGKLAKYFQAQGKSVLLAAGDTFRAAAREQLAEWGERNGVT-VISQASGDSAAVCFDAVE 356

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +D+++ DTAGRL   + LM  I K+ RVL++  P APH ++ VLDA  GQNA+ 
Sbjct: 357 AAKARGIDIVLADTAGRLPTQTHLMEEIKKVKRVLQKSMPDAPHEIVVVLDANIGQNAVN 416

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           QV  F    G TGLI+TK+DGTA+GG L  +     +PV F+GVGEGI+DL PF A++F
Sbjct: 417 QVIAFDDALGLTGLIVTKLDGTAKGGVLAALASRRPVPVRFIGVGEGIDDLRPFNAREF 475


>gi|62182070|ref|YP_218487.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129703|gb|AAX67406.1| GTPase domain of cell division membrane protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322716558|gb|EFZ08129.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 491

 Score =  232 bits (592), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+G    +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGGETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|291619278|ref|YP_003522020.1| FtsY [Pantoea ananatis LMG 20103]
 gi|291154308|gb|ADD78892.1| FtsY [Pantoea ananatis LMG 20103]
          Length = 637

 Score =  232 bits (592), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 187/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   ++I+  L  
Sbjct: 335 FFARLKRSLVKTRQNLGSGFIGLFRGKKIDDELFEELEEQLLIADVGVETTRRIITSLTQ 394

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY + +  +  +L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 395 HADRKQLRDAEALYGLLKTEMADILAKVEEPLNVE-GKTPFVILMVGVNGVGKTTTIGKL 453

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + A++
Sbjct: 454 ARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNISVVAQHTGADSASVIFDAIQAAKS 513

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N S LM  + K+ RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 514 RGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDEQAPHEVMLTIDASTGQNAISQAKL 573

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF A+DF
Sbjct: 574 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFKAEDF 628


>gi|300776242|ref|ZP_07086100.1| cell division protein FtsY [Chryseobacterium gleum ATCC 35910]
 gi|300501752|gb|EFK32892.1| cell division protein FtsY [Chryseobacterium gleum ATCC 35910]
          Length = 317

 Score =  232 bits (592), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 131/310 (42%), Positives = 191/310 (61%), Gaps = 15/310 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGV 60
           +SW +          L KG   +S    E +T  ++   ++DD V ++LE++LI SD+G 
Sbjct: 1   MSWFKNIFKKEEKETLDKGLEKSSQGFFEKMTKAVVGKSKVDDEVLDDLEEVLIASDVGA 60

Query: 61  AVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM--PLSKPFNWDFSHRPHVILV 116
           +   KI+E +  +R A+D  V V  +   + E I  +L+  P +   N D S +P+VI+V
Sbjct: 61  STTIKIIERI-EERVARDKYVGVNELDKILREEISGLLLENPHAGTGNIDTSKKPYVIMV 119

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ +    G KV+L A DTFR+AA+DQL IW++R     V   +GS
Sbjct: 120 VGVNGVGKTTTIGKLAHQFKSEGKKVVLGAADTFRAAAVDQLTIWSERVDVPIVKQGMGS 179

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A++  + A A+  DV+IIDTAGRLHN   LM  + K+ RV++++ P APH +L V
Sbjct: 180 DPASVAFDTVQSAVAQNADVVIIDTAGRLHNKINLMNELSKIKRVMQKVIPDAPHEILLV 239

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LD +TGQNA  Q + F A      L +TK+DGTA+GG +I I    +IPV ++GVGE + 
Sbjct: 240 LDGSTGQNAFEQAKQFTAATEVNALAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEKMQ 299

Query: 297 DLEPFVAKDF 306
           DL+ F   +F
Sbjct: 300 DLQLFNGTEF 309


>gi|161831407|ref|YP_001597722.1| signal recognition particle-docking protein FtsY [Coxiella burnetii
           RSA 331]
 gi|161763274|gb|ABX78916.1| signal recognition particle-docking protein FtsY [Coxiella burnetii
           RSA 331]
          Length = 324

 Score =  232 bits (592), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 194/310 (62%), Gaps = 4/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61
           N + +     W+ +L +    T  +L +G+++++  ++ +D  + EELE +L+ +DIG+ 
Sbjct: 14  NNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGIE 73

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             Q I+  L  +   K +S  + L D  ++ +  +L P  K  + + S  P VIL VGVN
Sbjct: 74  ATQSILNNLSQQVARKSLSDPKALIDALKIELLNILEPCQK--HLEISASPFVILTVGVN 131

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT I KL+        +VMLAAGDTFR+AAI+QL+ W  R +A  +  + G+D+A+
Sbjct: 132 GVGKTTTIAKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVIAQQPGADSAS 191

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A + A A+  D+LI DTAGRLH  S LM  + K+ RV+K+++P APH  L  LDA 
Sbjct: 192 VIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLALDAG 251

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q E FH   G TG+ +TK+DGTA+GG +  I    ++P+ F+G+GE I DL+P
Sbjct: 252 TGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLKP 311

Query: 301 FVAKDFSAVI 310
           F AK+F A +
Sbjct: 312 FNAKEFIAAL 321


>gi|152980422|ref|YP_001354829.1| signal recognition particle receptor [Janthinobacterium sp.
           Marseille]
 gi|151280499|gb|ABR88909.1| signal recognition particle receptor [Janthinobacterium sp.
           Marseille]
          Length = 419

 Score =  232 bits (592), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 184/307 (59%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A +  SW+ +L  G + TS  L    T +    ++DD + EELE  L+ SD GV   Q +
Sbjct: 119 AEQKQSWMARLKVGLSKTSTNL----TTLFVGAKIDDDLYEELESALLMSDAGVDATQFL 174

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++ L  K +  K     +V   +  L+ +ML PL KP      H+P V+++ GVNG GKT
Sbjct: 175 LDALKRKVKNEKLTEAAQVKTALRSLLLEMLTPLQKPLVLG-QHQPLVMMITGVNGAGKT 233

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W  R +   +  E G D AA+A++A
Sbjct: 234 TTIGKLAKHLQAHNQSVLLAAGDTFRAAAREQLTVWGQRNNVTVIAQESG-DPAAVAFDA 292

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              AQA+  +V+++DTAGRL     LM  + K+ RV+ +    APH +L ++D  TGQNA
Sbjct: 293 VHSAQARGTNVVMVDTAGRLPTQLHLMEELKKVKRVMAKGMASAPHEILLIIDGNTGQNA 352

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGL++TK+DGTA+GG L  I     IPVYF+GVGE I DL+PF A++
Sbjct: 353 LTQVKAFDDALGLTGLVVTKLDGTAKGGVLAAIARARPIPVYFIGVGEQIEDLQPFNAQE 412

Query: 306 FSAVITG 312
           F   + G
Sbjct: 413 FVEALLG 419


>gi|153209355|ref|ZP_01947362.1| signal recognition particle-docking protein FtsY [Coxiella burnetii
           'MSU Goat Q177']
 gi|212217698|ref|YP_002304485.1| cell division protein [Coxiella burnetii CbuK_Q154]
 gi|120575388|gb|EAX32012.1| signal recognition particle-docking protein FtsY [Coxiella burnetii
           'MSU Goat Q177']
 gi|212011960|gb|ACJ19340.1| cell division protein [Coxiella burnetii CbuK_Q154]
          Length = 324

 Score =  232 bits (592), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 129/310 (41%), Positives = 194/310 (62%), Gaps = 4/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61
           N + +     W+ +L +    T  +L +G+++++  ++ +D  + EELE +L+ +DIG+ 
Sbjct: 14  NNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGIE 73

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             Q I+  L  +   K +S  + L D  ++ +  +L P  K  + + S  P VIL VGVN
Sbjct: 74  ATQSILNNLSQQVSRKSLSDPKALIDALKIELLNILEPCQK--HLEISASPFVILTVGVN 131

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT I KL+        +VMLAAGDTFR+AAI+QL+ W  R +A     + G+D+A+
Sbjct: 132 GVGKTTTIAKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVSAQQPGADSAS 191

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A + A A+  D+LI DTAGRLH  S LM  + K+ RV+K+++P APH  L VLDA 
Sbjct: 192 VIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDAG 251

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q E FH   G TG+ +TK+DGTA+GG +  I    ++P+ F+G+GE I DL+P
Sbjct: 252 TGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLKP 311

Query: 301 FVAKDFSAVI 310
           F AK+F A +
Sbjct: 312 FNAKEFIAAL 321


>gi|226313207|ref|YP_002773101.1| cell division protein FtsY [Brevibacillus brevis NBRC 100599]
 gi|226096155|dbj|BAH44597.1| probable cell division protein FtsY [Brevibacillus brevis NBRC
           100599]
          Length = 335

 Score =  232 bits (592), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 137/325 (42%), Positives = 201/325 (61%), Gaps = 19/325 (5%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  +S    +K T G A T   L E + D++   +++DD   +ELE++LI SD+GV    
Sbjct: 11  IVQKSEEVTQKFTDGLAKTRDLLVEKVEDLVRRYKKIDDDFFDELEEILITSDVGVNTVM 70

Query: 65  KIVEELLTKRYAKDVSVQRV--LYDVSELIHKMLMPLSKPFNWDFSH--------RPHVI 114
           +++++L       +V  Q++    D+  ++ + L+ L K  N D +         R +VI
Sbjct: 71  ELIDDLRI-----EVRKQKIENAIDLQPILSEKLVALLK--NDDAADTALNVEDGRLNVI 123

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L VGVNGVGKTT IGK++        KV+LAAGDTFR+AAI+QL++W +R   D +  + 
Sbjct: 124 LFVGVNGVGKTTTIGKMAHMFKQQDKKVLLAAGDTFRAAAIEQLEVWGERVGVDVIKQQQ 183

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD AA+ Y+A + A++++VDVL+ DTAGRL N   LM  + K+ RVL+R  P APH VL
Sbjct: 184 GSDPAAVIYDAIQAAKSRQVDVLLCDTAGRLQNKVNLMEELAKVHRVLQRELPGAPHEVL 243

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNAL Q + F   AG TGL++TK+DGTA+GG +I I     IPV ++G+GE 
Sbjct: 244 LVLDATTGQNALSQAKTFGQSAGVTGLVLTKLDGTAKGGIVIAIRNELNIPVKYVGLGER 303

Query: 295 INDLEPFVAKDF-SAVITGCLDYGE 318
           ++DL+ F  + F  A+  G +   E
Sbjct: 304 MDDLQQFDPEQFVHALFAGLIQKDE 328


>gi|238650586|ref|YP_002916438.1| cell division protein [Rickettsia peacockii str. Rustic]
 gi|238624684|gb|ACR47390.1| cell division protein [Rickettsia peacockii str. Rustic]
          Length = 303

 Score =  232 bits (592), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 132/303 (43%), Positives = 190/303 (62%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD    EELE+LLI SD+ V V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVLVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L     PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAKLIEQQLSKSEIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AA++QL  WADR +   +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANVLLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HSVL V+DA TGQN   QV
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  
Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARN 299

Query: 310 ITG 312
           I G
Sbjct: 300 IVG 302


>gi|327404681|ref|YP_004345519.1| signal recognition particle-docking protein FtsY [Fluviicola
           taffensis DSM 16823]
 gi|327320189|gb|AEA44681.1| signal recognition particle-docking protein FtsY [Fluviicola
           taffensis DSM 16823]
          Length = 317

 Score =  232 bits (592), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 136/315 (43%), Positives = 190/315 (60%), Gaps = 14/315 (4%)

Query: 11  LSWIRK-----LTKGFASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
             W  K     L KG   T       +T  ++   R+DD V +ELE++LI SD+GV    
Sbjct: 4   FGWFSKENKETLDKGLEKTKESFFGKLTRSLVGKSRVDDEVLDELEEILISSDVGVNTTL 63

Query: 65  KIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSK--PFNWDF---SHRPHVILVV 117
           KI++ +  +R +KD  V    +   + E I  +L       P  +     +  PHVI+VV
Sbjct: 64  KIIDRI-NERVSKDKYVGTDELNKVLKEEIANLLSENDSDGPSEYTIPAHNGNPHVIMVV 122

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +   +G KV+L A DTFR+AA+DQL IW++R     V   +G+D
Sbjct: 123 GVNGVGKTTSIGKLANQFKKSGKKVVLGAADTFRAAAVDQLIIWSERVGVPIVHQGMGAD 182

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A++A   A+A+  DV+IIDTAGRLHN   LM  + K+ RV++++ P APH +L VL
Sbjct: 183 PASVAFDALSSAKAQGADVVIIDTAGRLHNKVNLMNELSKIKRVMEKVIPDAPHEILLVL 242

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D +TGQNA  Q + F      TGLI+TK+DGTA+GG +I I     IPV F+GVGEGI D
Sbjct: 243 DGSTGQNAYEQAKQFALATSLTGLIITKLDGTAKGGVVIGISDQMSIPVRFIGVGEGIED 302

Query: 298 LEPFVAKDFSAVITG 312
           L+ F  ++F + I G
Sbjct: 303 LQVFHKEEFVSSIFG 317


>gi|87244958|gb|ABD34789.1| secA-dependent peptide secretory protein [Rickettsia raoultii]
 gi|88595845|gb|ABD43171.1| FtsY [Rickettsia raoultii]
          Length = 303

 Score =  232 bits (591), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 191/303 (63%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD    EELE+LLI SD+ V+V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVSVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L     PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKAALAKLIEQQLSKSEIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV + A DTFR+AA++QL  WADR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKVAVTACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HSVL V+DA TGQN   QV
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  
Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNRHDFARN 299

Query: 310 ITG 312
           + G
Sbjct: 300 LVG 302


>gi|227539202|ref|ZP_03969251.1| signal recognition particle-docking protein FtsY [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300770676|ref|ZP_07080555.1| cell division protein FtsY [Sphingobacterium spiritivorum ATCC
           33861]
 gi|227240884|gb|EEI90899.1| signal recognition particle-docking protein FtsY [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300763152|gb|EFK59969.1| cell division protein FtsY [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 324

 Score =  232 bits (591), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 131/298 (43%), Positives = 187/298 (62%), Gaps = 11/298 (3%)

Query: 17  LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T       IT  ++    +DD V +ELE++L+ SD+GV    KI++ +   R 
Sbjct: 20  LDKGLEKTKEGFLSKITKAVVGKSTVDDDVLDELEEILVTSDVGVTTTLKIIDRI-QARV 78

Query: 76  AKDVSVQRVLYDVSELIHKMLMPL-----SKPF-NWDF-SHRPHVILVVGVNGVGKTTVI 128
           AKD  +     +++ L+   +  L     S  F N+++ +H+P+VI+VVGVNGVGKTT I
Sbjct: 79  AKDKYINT--SELNNLLKDEIQALLAENNSSDFENFEYGNHKPYVIMVVGVNGVGKTTTI 136

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ ++  AG KV+L A DTFR+AA+DQLK+W +R     V   +GSD A++A++  K 
Sbjct: 137 GKLAHQLKAAGNKVVLGAADTFRAAAVDQLKLWGERVGVRVVAQAMGSDPASVAFDTIKS 196

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A +   DV IIDTAGRLHN   LM  +GK+  V++++ P APH +L VLDA+TGQNA+ Q
Sbjct: 197 AVSNGDDVAIIDTAGRLHNKVGLMNELGKIKNVMQKVIPGAPHEILLVLDASTGQNAIEQ 256

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              F        L +TK+DGTA+GG +I I    KIPV ++GVGE I+DL+ F  K+F
Sbjct: 257 CTQFTQATDVNALALTKLDGTAKGGVVIGISDQFKIPVKYIGVGEKIDDLQLFNKKEF 314


>gi|254282221|ref|ZP_04957189.1| signal recognition particle-docking protein FtsY [gamma
           proteobacterium NOR51-B]
 gi|219678424|gb|EED34773.1| signal recognition particle-docking protein FtsY [gamma
           proteobacterium NOR51-B]
          Length = 374

 Score =  232 bits (591), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 123/300 (41%), Positives = 189/300 (63%), Gaps = 3/300 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   +  +L +G   T  +  EG+ ++ +  + LD  + E LE  L++SD+G+    +++
Sbjct: 62  EQTGFYTRLKRGLGRTGSQFAEGLGNLFLGKKALDADLLEALEAQLLQSDLGIEATSRVI 121

Query: 68  EELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++L  +   K+++  + V+  V   +  ++ P  +P + +   +P VILVVGVNG GKTT
Sbjct: 122 DDLTARVSRKELADAEAVMAAVRASLLDIIEPCEQPLSVE-GKKPFVILVVGVNGAGKTT 180

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGK++ +    G KV+LAAGDTFR+AA++QL+ W +R     V    G+D+A++ ++  
Sbjct: 181 TIGKMANRFQREGKKVILAAGDTFRAAAVEQLQTWGERHGVPVVAQHTGADSASVLFDGL 240

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+  DVLI DTAGRL N S LM  + K++RV+++LDP APH  L VLDA TGQNA+
Sbjct: 241 EAARARGADVLIADTAGRLQNKSHLMDELEKVVRVMRKLDPDAPHETLLVLDAGTGQNAV 300

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F A  G +G+ +TK+DGTARGG    I    + P+ F+G+GEG  DL PFVA+DF
Sbjct: 301 SQAVQFDAAIGVSGIALTKLDGTARGGVTFAIAERLRRPIRFIGIGEGAEDLRPFVARDF 360


>gi|87244956|gb|ABD34788.1| secA-dependent peptide secretory protein [Rickettsia raoultii]
 gi|88595847|gb|ABD43172.1| FtsY [Rickettsia raoultii]
          Length = 303

 Score =  232 bits (591), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 191/303 (63%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD    EELE+LLI SD+ V+V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVSVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L     PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAKLIEQQLSKSEIPFTLS-KNKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV + A DTFR+AA++QL  WADR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKVAVTACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HSVL V+DA TGQN   QV
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  
Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNRHDFARN 299

Query: 310 ITG 312
           + G
Sbjct: 300 LVG 302


>gi|224476347|ref|YP_002633953.1| putative cell division protein FtsY [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420954|emb|CAL27768.1| putative cell division protein FtsY [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 422

 Score =  232 bits (591), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 185/301 (61%), Gaps = 16/301 (5%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K  +G   +    +E + ++I+  R +D+   E LE++LI +D+G     ++V+EL T+ 
Sbjct: 88  KFKQGLEKSRENFQEQLNNLIARYRTVDEDFFEALEEMLITADVGFNTVMELVDELRTE- 146

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---------RPHVILVVGVNGVGKT 125
                + +R + + S+L   ++  + + +  D  H         R +VIL+VGVNGVGKT
Sbjct: 147 -----AQRRNIKETSDLKEVIVEKIVEIYEQDDDHSEVMNLEDGRLNVILMVGVNGVGKT 201

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ +    G KVMLAAGDTFR+ AI+QLK+W +R   D V    GSD AA+ Y+A
Sbjct: 202 TTIGKLAHRYKAEGKKVMLAAGDTFRAGAINQLKVWGERVGVDVVSQSEGSDPAAVMYDA 261

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+ K VD+LI DTAGRL N + LM  + KM  V+ +  P APH VL  LDATTGQNA
Sbjct: 262 INAAKHKDVDILICDTAGRLQNKANLMNELEKMKHVIGKAVPDAPHEVLLCLDATTGQNA 321

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q   F  V   TG+++TK+DGTA+GG ++ I    +IPV ++G+GE ++DL+PF  + 
Sbjct: 322 LSQARSFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELRIPVKYVGLGEKLDDLQPFNPES 381

Query: 306 F 306
           +
Sbjct: 382 Y 382


>gi|254373505|ref|ZP_04988992.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151571230|gb|EDN36884.1| signal recognition particle receptor FtsY [Francisella novicida
           GA99-3549]
          Length = 343

 Score =  232 bits (591), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ D+ + E++E  L+ +D+GV    +IV  L  K 
Sbjct: 42  RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVAYLRDKV 101

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              ++     L  +  + + ++++P  KP   D    P VILVVGVNGVGKTT IGKL+K
Sbjct: 102 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 161

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ Y+A   A++K 
Sbjct: 162 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQHEGADSASVIYDAISSAKSKG 221

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG NAL Q E F+
Sbjct: 222 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALSQAEAFN 281

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F A+DF+  +   
Sbjct: 282 QIVNLTGITITKLDGTAKGGIVFSIAKKLSLPLRFIGVGEKIDDLQVFNARDFTTALFNS 341

Query: 314 LD 315
            D
Sbjct: 342 ND 343


>gi|256820968|ref|YP_003142247.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           ochracea DSM 7271]
 gi|256582551|gb|ACU93686.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           ochracea DSM 7271]
          Length = 320

 Score =  231 bits (590), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 119/277 (42%), Positives = 179/277 (64%), Gaps = 5/277 (1%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYD-VS 89
           ++   ++D+ V ++LE++LI SD+GV    KI++ + T+    +Y     +  +L + ++
Sbjct: 37  LVGKSKVDEEVLDDLEEVLIASDVGVNTTLKIIDRIETRVAKDKYLNTSELNTILREEIA 96

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            L+ +     +  F      +P+V++VVGVNG GKTT IGKL+ + +  GLKV+L A DT
Sbjct: 97  GLLSETHTGEATDFTLPSEKKPYVMMVVGVNGAGKTTTIGKLASQFTKKGLKVVLGAADT 156

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAIDQL++WADRT    +  ++GSD A++AY+    A  +  DV+IIDTAGRLHN  
Sbjct: 157 FRAAAIDQLQVWADRTGVPMIKQQLGSDPASVAYDTLSSAVKQNADVVIIDTAGRLHNKI 216

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + K+ RV++++ P APH VL VLD +TGQNA  Q + F      T L +TK+DGT
Sbjct: 217 NLMNELSKIKRVMQKVIPDAPHEVLLVLDGSTGQNAFEQAKEFTKATEVTALAVTKLDGT 276

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A+GG +I I    +IPV ++GVGEGI+DL+ F   +F
Sbjct: 277 AKGGVVIGISDQFQIPVKYIGVGEGIDDLQIFNKYEF 313


>gi|269958440|ref|YP_003328227.1| cell division protein (FtsY) [Anaplasma centrale str. Israel]
 gi|269848269|gb|ACZ48913.1| cell division protein (FtsY) [Anaplasma centrale str. Israel]
          Length = 305

 Score =  231 bits (590), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 121/285 (42%), Positives = 184/285 (64%), Gaps = 4/285 (1%)

Query: 24  TSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           TS +L  GI  +    R++D    +EL  LLI +D+G   A    +++   +++ + S  
Sbjct: 18  TSSRLNAGIRKLFQEGRKVDQETLKELLHLLISTDMGRESASFFTQKIAAMQFS-EPSCA 76

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           RV   ++E I   L  ++ P + +  H P V+++ GVNG GKTT   KL++K    G  V
Sbjct: 77  RVRETLAEEIEAFLTKVAVPISIE--HSPQVVMLCGVNGSGKTTTAAKLARKFQREGKSV 134

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ++ A DTFR+AA+ QLKIWADR S   +  E G+DAA++AY+A  QA  +K+DV++IDTA
Sbjct: 135 LMGACDTFRAAAVSQLKIWADRISCPIIAGEAGADAASIAYKAVDQAIREKIDVVLIDTA 194

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL N+  LM  + K+ RV+ R D  APH+ + VLDAT GQNA  QVE+F + AG  G++
Sbjct: 195 GRLQNHKNLMEELAKVRRVIGRHDKKAPHNTIIVLDATIGQNAFSQVELFSSFAGVNGIV 254

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           +TK+DGTA+GG ++ +   + I ++ +GVGEGI+DL+ F A++F+
Sbjct: 255 LTKLDGTAKGGIVLSVAQKYGIHIHAVGVGEGIDDLKDFSAREFA 299


>gi|308068623|ref|YP_003870228.1| cell division protein ftsY-like protein [Paenibacillus polymyxa
           E681]
 gi|305857902|gb|ADM69690.1| Cell division protein ftsY-like protein [Paenibacillus polymyxa
           E681]
          Length = 338

 Score =  231 bits (590), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 135/312 (43%), Positives = 199/312 (63%), Gaps = 16/312 (5%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           + +A+++ S  ++   G   T     E +TD+ I  +++D+   EELE++LI +D+GV  
Sbjct: 9   ESIANKTESVTKQFKDGLEKTRKGFVEKVTDLMIRRKKIDEEFYEELEEILIGADVGVNT 68

Query: 63  AQKIVEEL---LTKRYAKDVS-VQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPH---VI 114
              ++E+L   + KR  +D S +Q VL + +SEL       L    N      P    VI
Sbjct: 69  VMNLIEDLREEVKKRKIEDASELQPVLSEKLSEL-------LRGNDNSQLKMSPDGITVI 121

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L VGVNGVGKTT IGKL+ +    G KV+LAAGDTFR+ AI+QL++W +R   + +  + 
Sbjct: 122 LFVGVNGVGKTTTIGKLAHRFKQEGKKVLLAAGDTFRAGAIEQLEVWGERAGVEVIKQQS 181

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD AA+ ++A + A+ ++VDVL+ DTAGRL N S LM  + K+ RV++R  P APH VL
Sbjct: 182 GSDPAAVMFDAVQAAKQRQVDVLLCDTAGRLQNKSNLMEELNKIFRVIQREIPDAPHEVL 241

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNAL Q ++F   +G TGL++TK+DGTA+GG ++ I     +PV  +G+GE 
Sbjct: 242 LVLDATTGQNALNQAKLFGEKSGVTGLVLTKLDGTAKGGIVVAIRQELNLPVKLVGLGEK 301

Query: 295 INDLEPFVAKDF 306
           +NDL+PF ++ F
Sbjct: 302 VNDLQPFDSEQF 313


>gi|310641511|ref|YP_003946269.1| signal recognition gtpase (docking protein) [Paenibacillus polymyxa
           SC2]
 gi|309246461|gb|ADO56028.1| Signal recognition GTPase (Docking protein) [Paenibacillus polymyxa
           SC2]
          Length = 335

 Score =  231 bits (590), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 136/312 (43%), Positives = 198/312 (63%), Gaps = 16/312 (5%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           + +AS++ S  ++   G   T     E +TD+ I  +++D+   EELE++LI +D+GV  
Sbjct: 9   ESIASKTESVTKQFKDGLEKTRKGFVEKVTDLMIRRKKIDEEFYEELEEILIGADVGVNT 68

Query: 63  AQKIVEEL---LTKRYAKDVS-VQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPH---VI 114
              ++E+L   + KR  +D S +Q VL + +SEL       L    N      P    VI
Sbjct: 69  VMNLIEDLRGEVKKRKIEDASELQPVLSEKLSEL-------LRGNDNSQLKMNPDGITVI 121

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L VGVNGVGKTT IGKL+ +    G KV+LAAGDTFR+ AI+QL++W  R   + +  + 
Sbjct: 122 LFVGVNGVGKTTTIGKLAHRFKQEGKKVLLAAGDTFRAGAIEQLEVWGQRAGVEVIKQQS 181

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD AA+ ++A + A+ ++VDVL+ DTAGRL N S LM  + K+ RV++R  P APH VL
Sbjct: 182 GSDPAAVMFDAVQAAKQRQVDVLLCDTAGRLQNKSNLMEELNKIFRVIQREIPDAPHEVL 241

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNAL Q ++F   +G TGL++TK+DGTA+GG ++ I     +PV  +G+GE 
Sbjct: 242 LVLDATTGQNALNQAKLFGEKSGVTGLVLTKLDGTAKGGIVVAIRQELNLPVKLVGLGEK 301

Query: 295 INDLEPFVAKDF 306
           +NDL+PF ++ F
Sbjct: 302 VNDLQPFDSEQF 313


>gi|212211681|ref|YP_002302617.1| cell division protein [Coxiella burnetii CbuG_Q212]
 gi|212010091|gb|ACJ17472.1| cell division protein [Coxiella burnetii CbuG_Q212]
          Length = 324

 Score =  231 bits (590), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 195/310 (62%), Gaps = 4/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61
           N + +     W+ +L +    T  +L +G+++++  ++ +D  + EELE +L+ +DIG+ 
Sbjct: 14  NNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGIE 73

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             Q I+  L  +   K +S  + L D  ++ +  +L P  K  + + S  P VIL VGVN
Sbjct: 74  ATQSILNNLSQQVARKSLSDPKALIDALKIELLNILGPCQK--HLEISASPFVILTVGVN 131

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT I KL+        +V+LAAGDTFR+AAI+QL+ W  R +A  +  + G+D+A+
Sbjct: 132 GVGKTTTIAKLAHFYQSQKKRVILAAGDTFRAAAIEQLQTWGQRNNAPVIAQQPGADSAS 191

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A + A A+  D+LI DTAGRLH  S LM  + K+ RV+K+++P APH  L VLDA 
Sbjct: 192 VIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDAG 251

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q E FH   G TG+ +TK+DGTA+GG +  I    ++P+ F+G+GE I DL+P
Sbjct: 252 TGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLKP 311

Query: 301 FVAKDFSAVI 310
           F AK+F A +
Sbjct: 312 FNAKEFIAAL 321


>gi|83814471|ref|YP_446277.1| signal recognition particle-docking protein FtsY [Salinibacter
           ruber DSM 13855]
 gi|294508208|ref|YP_003572266.1| Signal recognition particle GTPase [Salinibacter ruber M8]
 gi|83755865|gb|ABC43978.1| signal recognition particle-docking protein FtsY [Salinibacter
           ruber DSM 13855]
 gi|294344536|emb|CBH25314.1| Signal recognition particle GTPase [Salinibacter ruber M8]
          Length = 324

 Score =  231 bits (590), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 128/272 (47%), Positives = 180/272 (66%), Gaps = 7/272 (2%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMP 98
           +D  V +ELE++LI SD+GV     I++ +   R A+D  VS Q +   + + I ++++ 
Sbjct: 44  VDAEVLDELEEILITSDVGVDTTLDIIDHV-EARVAQDQYVSAQELNGLIRDEIARLMLE 102

Query: 99  LS--KPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            S  +P ++D    ++PHVI+VVGVNGVGKTT IGK++ K   AG  V++ AGDTFR+AA
Sbjct: 103 GSEERPADFDAPLPNQPHVIMVVGVNGVGKTTTIGKMAHKYRQAGKSVLMGAGDTFRAAA 162

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           I+QL+IWADR     +  + G+D AA+AY+  + A+A+  DV I+DTAGRLH    LM  
Sbjct: 163 IEQLEIWADRAGVPLIKQKHGADPAAVAYDTIEAAEARDADVAIVDTAGRLHTKGGLMDE 222

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + KM RV+ R  P APH VL VLDA+TGQNALRQ E F      TGL +TK+DGTA+GG 
Sbjct: 223 LAKMKRVMGRKIPDAPHEVLLVLDASTGQNALRQAEEFIDSVDVTGLALTKLDGTAKGGV 282

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +I +    ++PV ++GVGE + DL+ F  K F
Sbjct: 283 VIGVSHQFQVPVKYIGVGEAVEDLQVFDRKGF 314


>gi|268317919|ref|YP_003291638.1| signal recognition particle-docking protein FtsY [Rhodothermus
           marinus DSM 4252]
 gi|262335453|gb|ACY49250.1| signal recognition particle-docking protein FtsY [Rhodothermus
           marinus DSM 4252]
          Length = 320

 Score =  231 bits (590), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 133/304 (43%), Positives = 193/304 (63%), Gaps = 8/304 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L +G   T   L   +  +I  + ++DD V ++LE+LLI SD+GV    +I+  +   R
Sbjct: 14  RLEEGLEKTRTSLLGKLDRLIRGKDQVDDEVLDQLEELLITSDVGVKTTLEIIRRV-EAR 72

Query: 75  YAKD--VSVQRVLYDVSELIHKMLM--PLSKPFNWD--FSHRPHVILVVGVNGVGKTTVI 128
            A+D  VS + +   + + I ++L+     +P ++D    H+P+VI+VVGVNGVGKTT I
Sbjct: 73  VARDKYVSTRELNAIIRDEIAQLLLDHAPERPADFDAPLPHKPYVIMVVGVNGVGKTTTI 132

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +  +AG  V+L A DTFR+AAI+QL+IWA+R     +    G+D AA+A++    
Sbjct: 133 GKLAYRYREAGKSVLLGAADTFRAAAIEQLEIWAERAGVPLIKQHPGADPAAVAFDTLAA 192

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+++ VDV+IIDTAGRLH    LM  + K+ RV+ R    APH VL VLDA+TGQNA+RQ
Sbjct: 193 AKSRGVDVVIIDTAGRLHTKGGLMEELAKIRRVMGRQVEGAPHEVLLVLDASTGQNAIRQ 252

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F      TGL++TK+DGTA+GG +I I    KIPV ++GVGE I DL+ F  + F  
Sbjct: 253 AEEFTKSVEVTGLVLTKLDGTAKGGIVIGISNEFKIPVKYIGVGEKIEDLQIFDRRAFVE 312

Query: 309 VITG 312
            + G
Sbjct: 313 ALFG 316


>gi|73662843|ref|YP_301624.1| signal recognition particle GTPase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495358|dbj|BAE18679.1| signal recognition particle GTPase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 406

 Score =  231 bits (590), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 185/301 (61%), Gaps = 16/301 (5%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G   +    +  + ++I+  R++D+   E LE++LI +D+G     ++VEEL  + 
Sbjct: 77  KFRAGLEKSRENFQAQLNNLIARYRKVDEEFFEALEEMLITADVGFNTVMQLVEELREEA 136

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---------HVILVVGVNGVGKT 125
             +++S      D+ E+I + ++ +   ++ D  H           +VIL+VGVNGVGKT
Sbjct: 137 QKRNISETE---DLREVIVEKIVEI---YHQDDEHSEVMNIENEGLNVILMVGVNGVGKT 190

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ +    G KVMLAAGDTFR+ AI QLK+W +R   D +    GSD AA+ Y+A
Sbjct: 191 TTIGKLAHRYQAEGKKVMLAAGDTFRAGAIQQLKVWGERVGVDVMSQNEGSDPAAVMYDA 250

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A++K +D+LI DTAGRL N S LM  + K+ RV+ R  P APH VL  LDATTGQNA
Sbjct: 251 INAAKSKGIDILICDTAGRLQNKSNLMNELEKVKRVISRAVPEAPHEVLLCLDATTGQNA 310

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q + F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + 
Sbjct: 311 LSQAKSFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNPES 370

Query: 306 F 306
           +
Sbjct: 371 Y 371


>gi|198242705|ref|YP_002217529.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937221|gb|ACH74554.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326625310|gb|EGE31655.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 491

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/295 (41%), Positives = 186/295 (63%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 307

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ +++ + A+A
Sbjct: 308 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDSIQAAKA 367

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVLI DTAGRL N   LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 368 RNVDVLIADTAGRLQNKLHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKL 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 428 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 482


>gi|146302707|ref|YP_001197298.1| signal recognition particle-docking protein FtsY [Flavobacterium
           johnsoniae UW101]
 gi|146157125|gb|ABQ07979.1| signal recognition particle-docking protein FtsY [Flavobacterium
           johnsoniae UW101]
          Length = 317

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 128/297 (43%), Positives = 186/297 (62%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T       ++  ++ + ++DD V + LE++L+ SD+GV    KI+E +  KR 
Sbjct: 16  LDKGLEKTKTTFFSKLSKAVAGKSKVDDDVLDNLEEVLVGSDVGVNTTLKIIERI-EKRV 74

Query: 76  AKDV-----SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A+D       + ++L D +  L+ +     +  F      +P+V++VVGVNGVGKTT IG
Sbjct: 75  AEDKYLGTDELNQILRDEIGGLLSETNTGEATEFEIPKDKKPYVLMVVGVNGVGKTTTIG 134

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KV+L A DTFR+AAIDQL++WADR +   V   +GSD A++A++  + A
Sbjct: 135 KLAYQFKKAGYKVVLGAADTFRAAAIDQLQVWADRVNVPIVRQNMGSDPASVAFDTLQSA 194

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+  DV+IIDTAGRLHN   LM  + K+ RV++++   APH VL VLD +TGQNA  Q 
Sbjct: 195 VAQNADVVIIDTAGRLHNKINLMNELSKVKRVMQKVVADAPHDVLLVLDGSTGQNAFEQA 254

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGI DL+ F   +F
Sbjct: 255 KQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEF 311


>gi|57239579|ref|YP_180715.1| cell division protein ftsY-like protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579567|ref|YP_197779.1| cell division protein ftsY-like protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617620|ref|YP_196819.1| cell division protein ftsY-like protein [Ehrlichia ruminantium str.
           Gardel]
 gi|57161658|emb|CAH58587.1| putative cell division protein FtsY [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417232|emb|CAI28345.1| Cell division protein ftsY homolog [Ehrlichia ruminantium str.
           Gardel]
 gi|58418193|emb|CAI27397.1| Cell division protein ftsY homolog [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 309

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/302 (40%), Positives = 198/302 (65%), Gaps = 4/302 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           +++  +   + K    TS KL +GI  I S S++++    EEL++LLI +DIG   A  +
Sbjct: 2   TDNQGFFSNIKKSLFKTSSKLSDGIKKIFSNSKKINQETLEELKELLITADIGYENASLL 61

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++++   ++  +V+   +   ++E I  +L+ + KPF+     +PHVI++ G NG GKTT
Sbjct: 62  IKKIAEAKF-DEVTDHTIKQKLAEEIENILLQVEKPFS--IIKKPHVIMICGTNGNGKTT 118

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL+ K  + G  V++AA DTFR+AA +QL +W+ +     V S  GSDAA++AY+A 
Sbjct: 119 TVGKLAYKFKNNGKSVLVAACDTFRAAATEQLTVWSQKVDFPIVTSTQGSDAASVAYQAM 178

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA   ++D+L++DTAGRLHN   LM  + K+ R++ + D  APH V+ +LDATTGQNAL
Sbjct: 179 QQALKNEIDILLVDTAGRLHNYKNLMEELAKIKRIIGKHDNEAPHDVVLILDATTGQNAL 238

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVE+F      +GL++TK+DGTA+GG +I I   +K+ ++ +G+GE + DL+ F AK+F
Sbjct: 239 NQVEVFLQFVNISGLVITKLDGTAKGGVVIRIAQKYKLNIHAIGIGEQVEDLKDFSAKEF 298

Query: 307 SA 308
           +A
Sbjct: 299 TA 300


>gi|219871928|ref|YP_002476303.1| cell division protein, signal recognition particle GTPase
           [Haemophilus parasuis SH0165]
 gi|219692132|gb|ACL33355.1| cell division protein, signal recognition particle GTPase
           [Haemophilus parasuis SH0165]
          Length = 455

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/295 (41%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+    KI++ L  
Sbjct: 151 FFSRLIKGLIKTKQSIGSGFRNFFSGKKIDDELFEELEEQLLVADLGMPTTTKIIKNLTE 210

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               + +    +LY   ++ +  +L P+++    +   +P+VIL+VGVNGVGKTT IGKL
Sbjct: 211 HATKQQLRDAELLYQQLKVELADVLKPVAQSLVLE-DKKPYVILMVGVNGVGKTTTIGKL 269

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ ++A + A A
Sbjct: 270 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGADSASVIFDAMQSAAA 329

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +DVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 330 KGIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 389

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I+DL  F A++F
Sbjct: 390 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIDDLRSFDAEEF 444


>gi|116749888|ref|YP_846575.1| signal recognition particle-docking protein FtsY [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698952|gb|ABK18140.1| signal recognition particle-docking protein FtsY [Syntrophobacter
           fumaroxidans MPOB]
          Length = 326

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 119/275 (43%), Positives = 185/275 (67%), Gaps = 4/275 (1%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIH 93
           ++  +++D  + +ELE++LI SD+GV   Q ++E++  K   +++   + L D + E I 
Sbjct: 50  VLGRKKIDMDLLDELEEVLITSDLGVRTTQLLLEKVADKIKRQELKDPQKLRDQLREEIT 109

Query: 94  KMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           ++L   S    WD  S RP VI+++GVNGVGKTT IGKL+ +    GLKVML A DTFR+
Sbjct: 110 RILSVESSA--WDPRSARPFVIMIIGVNGVGKTTTIGKLAHQFKSEGLKVMLVAADTFRA 167

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA++QL +W +R +   V  + GSD +A+A++A   A ++ +D++++DTAGR+H    LM
Sbjct: 168 AAVEQLSLWGERVNVPVVKQKSGSDPSAVAFDAMDAAVSRGMDIVLLDTAGRMHTKVNLM 227

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+ RV+ R DP APH +L VLDA+TGQNAL Q  +F    G TGLI+TK+DGTA+G
Sbjct: 228 EELKKVQRVVNRKDPSAPHEILLVLDASTGQNALSQARLFKEEIGVTGLILTKLDGTAKG 287

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           G ++ I    ++PV ++G+GE ++DL PF  ++F+
Sbjct: 288 GIIVAISDELQLPVRYIGIGESLDDLRPFDPEEFT 322


>gi|254374967|ref|ZP_04990447.1| hypothetical protein FTDG_01149 [Francisella novicida GA99-3548]
 gi|151572685|gb|EDN38339.1| hypothetical protein FTDG_01149 [Francisella novicida GA99-3548]
          Length = 343

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ D+ + E++E  L+ +D+GV    +IV  L  K 
Sbjct: 42  RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVAYLRDKV 101

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              ++     L  +  + + ++++P  KP   D    P VILVVGVNGVGKTT IGKL+K
Sbjct: 102 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKLPFVILVVGVNGVGKTTTIGKLTK 161

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ Y+A   A++K 
Sbjct: 162 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQHEGADSASVIYDAISSAKSKG 221

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG NAL Q E F+
Sbjct: 222 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALNQAEAFN 281

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F A+DF+  +   
Sbjct: 282 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFTTALFNS 341

Query: 314 LD 315
            D
Sbjct: 342 ND 343


>gi|57866686|ref|YP_188384.1| cell division protein FtsY [Staphylococcus epidermidis RP62A]
 gi|242242518|ref|ZP_04796963.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus
           epidermidis W23144]
 gi|57637344|gb|AAW54132.1| cell division protein FtsY [Staphylococcus epidermidis RP62A]
 gi|242234026|gb|EES36338.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus
           epidermidis W23144]
          Length = 408

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 183/299 (61%), Gaps = 12/299 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G     K+ +EL T+ 
Sbjct: 83  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEA 142

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             +++   +   D+ E+I + ++ +       S+  N +   R +VIL+VGVNGVGKTT 
Sbjct: 143 QRRNI---QETEDLREVIVEKIVEIYHQEDDHSEAMNIE-DGRLNVILMVGVNGVGKTTT 198

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G KVMLAAGDTFR+ AI QL +W +R   + V    GSD AA+ Y+A  
Sbjct: 199 IGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDPAAVVYDAIN 258

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LDATTGQNAL 
Sbjct: 259 AAKNKDVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLDATTGQNALS 318

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 319 QARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDLQPFSPESY 377


>gi|167856451|ref|ZP_02479171.1| cell division protein [Haemophilus parasuis 29755]
 gi|167852434|gb|EDS23728.1| cell division protein [Haemophilus parasuis 29755]
          Length = 455

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/295 (41%), Positives = 190/295 (64%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+    KI++ L  
Sbjct: 151 FFSRLIKGLIKTKQSIGSGFRNFFSGKKIDDELFEELEEQLLVADLGMPTTTKIIKNLTE 210

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               + +    +LY   ++ +  +L P+++    +   +P+VIL+VGVNGVGKTT IGKL
Sbjct: 211 HATKQQLRDAELLYQQLKVELADVLKPVAQSLVLE-DKKPYVILMVGVNGVGKTTTIGKL 269

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ ++A + A A
Sbjct: 270 ARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGADSASVIFDAMQSAAA 329

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +DVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q ++
Sbjct: 330 KGIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKL 389

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I+DL  F A++F
Sbjct: 390 FNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIDDLRSFDAEEF 444


>gi|251810665|ref|ZP_04825138.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876333|ref|ZP_06285200.1| signal recognition particle-docking protein FtsY [Staphylococcus
           epidermidis SK135]
 gi|251805825|gb|EES58482.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295358|gb|EFA87885.1| signal recognition particle-docking protein FtsY [Staphylococcus
           epidermidis SK135]
          Length = 408

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 183/299 (61%), Gaps = 12/299 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G     K+ +EL T+ 
Sbjct: 83  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEA 142

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             +++   +   D+ E+I + ++ +       S+  N +   R +VIL+VGVNGVGKTT 
Sbjct: 143 QRRNI---QETEDLREVIVEKIVEIYHQEDDHSEAMNIE-DGRLNVILMVGVNGVGKTTT 198

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G KVMLAAGDTFR+ AI QL +W +R   + V    GSD AA+ Y+A  
Sbjct: 199 IGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDPAAVVYDAIN 258

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LDATTGQNAL 
Sbjct: 259 AAKNKDVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLDATTGQNALS 318

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 319 QARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDLQPFNPESY 377


>gi|293366800|ref|ZP_06613476.1| cell division protein FtsY [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319101|gb|EFE59471.1| cell division protein FtsY [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329736560|gb|EGG72826.1| signal recognition particle-docking protein FtsY [Staphylococcus
           epidermidis VCU045]
          Length = 408

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 183/299 (61%), Gaps = 12/299 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G     K+ +EL T+ 
Sbjct: 83  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEA 142

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHVILVVGVNGVGKTTV 127
             +++   +   D+ E+I + ++ +    + D+S        R +VIL+VGVNGVGKTT 
Sbjct: 143 QRRNI---QETEDLREVIVEKIVEIYHQED-DYSEAMNIEDGRLNVILMVGVNGVGKTTT 198

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G KVMLAAGDTFR+ AI QL +W +R   + V    GSD AA+ Y+A  
Sbjct: 199 IGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDPAAVVYDAIN 258

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LDATTGQNAL 
Sbjct: 259 AAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLDATTGQNALS 318

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 319 QARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDLQPFNPESY 377


>gi|70726680|ref|YP_253594.1| hypothetical protein SH1679 [Staphylococcus haemolyticus JCSC1435]
 gi|68447404|dbj|BAE04988.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 407

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G   +    +E + ++I+  R +D+   E LE++LI +D+G     ++ EEL T+ 
Sbjct: 79  KFKAGLEKSRQNFQEQLNNLIARYRTVDEDFFEALEEMLITADVGFNTVMQLTEELRTEA 138

Query: 75  YAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +++     L +V      E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 139 QRRNIQETEDLREVIVEKIVEIYHQE-DDQSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 196

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQL++W DR   + +    GSD AA+ Y+A   A
Sbjct: 197 KLAHRYKMEGKKVMLAAGDTFRAGAIDQLQVWGDRVGVEVIRQSEGSDPAAVVYDAINSA 256

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 257 KNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAVPDAPHEALLCLDATTGQNALSQA 316

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 317 RSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNPESY 373


>gi|30249386|ref|NP_841456.1| Signal recognition particle GTPase, FtsY protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138749|emb|CAD85326.1| Signal recognition particle GTPase, FtsY protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 345

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 133/317 (41%), Positives = 194/317 (61%), Gaps = 15/317 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V +  +S+  K+ +G   T  +L + ++ +   R++D+ + EELE  L+ +D G+    
Sbjct: 31  QVETRPVSFTDKIRQGLTRTRQQLGKQLSGLFGGRKIDEDLYEELETALLTADTGIEATN 90

Query: 65  KIVEELLTK--RYAKDVSVQ--RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +++E L T+  R A D S Q   VL DV   + ++L PL +P      H P VI++ GVN
Sbjct: 91  RLLESLRTRVRRDALDDSEQLKTVLQDV---LTELLQPLERPL-VTTGHTPFVIMIAGVN 146

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG----S 176
           GVGKTT IGKL+      G  V+LAAGDTFR+AA +QLK+W +R     +  E      S
Sbjct: 147 GVGKTTTIGKLAHYFQSQGHSVLLAAGDTFRAAAQEQLKVWGERNQITVISQESDPGKKS 206

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A   A A+K+D+++ DTAGRL     LM  I K+ RV+ +  P APH VL V
Sbjct: 207 DPAAVIFDAINAAIARKIDIVLADTAGRLTTQLHLMEEIRKIKRVIAKAIPDAPHEVLLV 266

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV--THKIP-VYFLGVGE 293
           LDA TGQNA+ Q++ F+   G TGL+MTK+DGTARGG +  I    T   P + F+GVGE
Sbjct: 267 LDANTGQNAVSQLKAFNDALGVTGLVMTKLDGTARGGVIAAIAAQFTDTPPALRFIGVGE 326

Query: 294 GINDLEPFVAKDFSAVI 310
           G++DL PF A++F+  +
Sbjct: 327 GLDDLRPFNAREFAEAL 343


>gi|115315294|ref|YP_764017.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. holarctica OSU18]
 gi|167009994|ref|ZP_02274925.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. holarctica FSC200]
 gi|169656723|ref|YP_001429185.2| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|254368195|ref|ZP_04984215.1| signal recognition particle receptor ftsY [Francisella tularensis
           subsp. holarctica 257]
 gi|115130193|gb|ABI83380.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134254005|gb|EBA53099.1| signal recognition particle receptor ftsY [Francisella tularensis
           subsp. holarctica 257]
 gi|164551791|gb|ABU62229.2| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 343

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 191/302 (63%), Gaps = 2/302 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ D+ + E++E  L+ +D+GV    +IV  L  K 
Sbjct: 42  RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVTYLCDKV 101

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              ++     L  +  + + ++++P  KP   D    P VILVVGVNGVGKTT IGKL+K
Sbjct: 102 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 161

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ Y A   A++K 
Sbjct: 162 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSASVIYNAIGSAKSKG 221

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG NAL Q E F+
Sbjct: 222 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALNQAEAFN 281

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F A+DF+  +   
Sbjct: 282 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFTTALFNS 341

Query: 314 LD 315
            D
Sbjct: 342 ND 343


>gi|53802591|ref|YP_112672.1| cytochrome oxidase assembly family protein/cell division protein
           FtsY [Methylococcus capsulatus str. Bath]
 gi|53756352|gb|AAU90643.1| cytochrome oxidase assembly family protein/cell division protein
           FtsY [Methylococcus capsulatus str. Bath]
          Length = 671

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 126/284 (44%), Positives = 184/284 (64%), Gaps = 4/284 (1%)

Query: 27  KLKEGITDIISSR---RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           K +  +T ++S+    R+D  + +E+E+ L+ +D+GV V ++I+ +L +    ++ +  R
Sbjct: 371 KTRSSLTGLLSALGRGRIDRALLDEIEEQLLMADVGVPVTREIIADLGSDLDRQEPADGR 430

Query: 84  VLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
            L D        ++ P S P       RP VILVVGVNGVGKTT IGKL+K++ + G  V
Sbjct: 431 ALRDRLRGRLLDIVRPCSVPLVIPPEVRPFVILVVGVNGVGKTTTIGKLAKRLQNEGHSV 490

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           MLAAGDTFR+AA++QL+ W +R     +    G+D+A++ Y+A + A+A+ VD+LI DTA
Sbjct: 491 MLAAGDTFRAAAVEQLQTWGERNKIAVIAQHSGADSASVIYDAVEAARARGVDILIADTA 550

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH  S LM  + K+ R++ RLD  APH VL VLDA TGQNAL Q  +F+   G TGL+
Sbjct: 551 GRLHTKSNLMEELSKIKRIIGRLDETAPHEVLLVLDAGTGQNALSQARLFNEAVGLTGLV 610

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +TK+DGTA+GG +  +     IP+ F+G+GEGI+DL  F A  F
Sbjct: 611 LTKLDGTAKGGVIFALARQFGIPIRFIGIGEGIDDLRDFDAVQF 654


>gi|53724091|ref|YP_104611.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei ATCC 23344]
 gi|52427514|gb|AAU48107.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei ATCC 23344]
          Length = 327

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/302 (43%), Positives = 187/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ L 
Sbjct: 32  SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 87

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K F    + +P V+++ GVNG GKTT IGK
Sbjct: 88  EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSFVLGRA-QPLVMMIAGVNGAGKTTSIGK 146

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 147 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 205

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 206 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 265

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 266 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 325

Query: 311 TG 312
            G
Sbjct: 326 LG 327


>gi|56417159|ref|YP_154233.1| cell division protein [Anaplasma marginale str. St. Maries]
 gi|222475524|ref|YP_002563941.1| cell division protein (ftsY) [Anaplasma marginale str. Florida]
 gi|254995329|ref|ZP_05277519.1| cell division protein (ftsY) [Anaplasma marginale str. Mississippi]
 gi|255003510|ref|ZP_05278474.1| cell division protein (ftsY) [Anaplasma marginale str. Puerto Rico]
 gi|255004632|ref|ZP_05279433.1| cell division protein (ftsY) [Anaplasma marginale str. Virginia]
 gi|56388391|gb|AAV86978.1| cell division protein [Anaplasma marginale str. St. Maries]
 gi|222419662|gb|ACM49685.1| cell division protein (ftsY) [Anaplasma marginale str. Florida]
          Length = 305

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 121/285 (42%), Positives = 184/285 (64%), Gaps = 4/285 (1%)

Query: 24  TSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           TS KL  GI  +    +++D    +EL  LLI +D+G   A    +++   +++ + S  
Sbjct: 18  TSSKLNAGIRKLFRDGQKVDQETLKELLHLLISTDMGRESASFFTQKIAAMQFS-EPSCA 76

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           RV   ++E I   L  ++ P + +  H P V+++ GVNG GKTT   KL++K    G  V
Sbjct: 77  RVRETLAEEIEAFLTKVAVPISIE--HSPQVVMLCGVNGSGKTTTAAKLARKFQREGKSV 134

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ++ A DTFR+AA+ QLKIWADR S   +  E G+DAA++AY+A  QA  +K+DV++IDTA
Sbjct: 135 LMGACDTFRAAAVSQLKIWADRISCPIIAGEAGADAASIAYKAVDQAIREKIDVVLIDTA 194

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL N+  LM  + K+ RV+ R D  APH+ + VLDAT GQNA  QVE+F + AG  G++
Sbjct: 195 GRLQNHKNLMEELAKVRRVIGRHDKKAPHNTIIVLDATIGQNAFSQVELFSSFAGVNGIV 254

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           +TK+DGTA+GG ++ +   + I ++ +GVGEGI+DL+ F A++F+
Sbjct: 255 LTKLDGTAKGGIVLSVAQKYGIHIHAVGVGEGIDDLKDFSAREFA 299


>gi|332678887|gb|AEE88016.1| Signal recognition particle receptor protein FtsY (alpha subunit)
           [Francisella cf. novicida Fx1]
          Length = 331

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ D+ + E++E  L+ +D+GV    +IV  L  K 
Sbjct: 30  RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVAYLRDKV 89

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              ++     L  +  + + ++++P  KP   D    P VILVVGVNGVGKTT IGKL+K
Sbjct: 90  ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKLPFVILVVGVNGVGKTTTIGKLTK 149

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ Y+A   A++K 
Sbjct: 150 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQHEGADSASVIYDAISSAKSKG 209

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG NAL Q E F+
Sbjct: 210 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALNQAEAFN 269

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F A+DF+  +   
Sbjct: 270 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFDARDFTTALFNS 329

Query: 314 LD 315
            D
Sbjct: 330 ND 331


>gi|242373527|ref|ZP_04819101.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus
           epidermidis M23864:W1]
 gi|242348890|gb|EES40492.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus
           epidermidis M23864:W1]
          Length = 418

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 184/299 (61%), Gaps = 12/299 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G     K+ +EL T+ 
Sbjct: 89  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEA 148

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             +++   +   D+ E+I + ++ +       S+  N +   R +VIL+VGVNGVGKTT 
Sbjct: 149 QRRNI---QETEDLREVIVEKIVEIYHQEDEHSEAMNIE-DGRLNVILMVGVNGVGKTTT 204

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G KVMLAAGDTFR+ AI QL++W +R   + V    GSD AA+ Y+A  
Sbjct: 205 IGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLQVWGERVGVEVVSQSEGSDPAAVVYDAIN 264

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LDATTGQNAL 
Sbjct: 265 AAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAIPDAPHEALLCLDATTGQNALS 324

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 QARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNPESY 383


>gi|56707294|ref|YP_169190.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110669764|ref|YP_666321.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis FSC198]
 gi|254369976|ref|ZP_04985984.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254874132|ref|ZP_05246842.1| signal recognition particle receptor ftsY [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|56603786|emb|CAG44753.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320097|emb|CAL08136.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151568222|gb|EDN33876.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254840131|gb|EET18567.1| signal recognition particle receptor ftsY [Francisella tularensis
           subsp. tularensis MA00-2987]
          Length = 343

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ D+ + E++E  L+ +D+GV    +IV  L  K 
Sbjct: 42  RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVTYLRDKV 101

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              ++     L  +  + + ++++P  KP   D    P VILVVGVNGVGKTT IGKL+K
Sbjct: 102 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 161

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ Y+A   A++K 
Sbjct: 162 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSASVIYDAIGSAKSKG 221

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG NAL Q E F+
Sbjct: 222 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALNQAEAFN 281

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F A+DF+  +   
Sbjct: 282 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFTTALFNS 341

Query: 314 LD 315
            D
Sbjct: 342 ND 343


>gi|167463677|ref|ZP_02328766.1| signal recognition particle-docking protein FtsY [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322382558|ref|ZP_08056438.1| signal recognition particle-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153474|gb|EFX45879.1| signal recognition particle-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 335

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 135/323 (41%), Positives = 203/323 (62%), Gaps = 10/323 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           + +++++ +   K  +G + T     E I D+ S+R+ +D+G  EELE++LI +D+GV  
Sbjct: 9   ESISNKTEAVTNKFKEGLSKTRDVFVERIEDLFSTRKKVDEGFYEELEEILISADVGVNT 68

Query: 63  AQKIVEEL---LTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVV 117
             +++++L   + KR  +D  V Q VL +  +LI+  L+   K    + +     VIL V
Sbjct: 69  VMELIDDLRDEVRKRKIEDPGVLQPVLSE--KLIN--LLETGKDAELNLAGEGLSVILFV 124

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGK++  +   G KVMLAAGDTFR+ AI+QL+ W +R   + +    GSD
Sbjct: 125 GVNGVGKTTTIGKMAHMLKSQGKKVMLAAGDTFRAGAIEQLETWGERVGVEVIKQHSGSD 184

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A + A+ + +DVL+ DTAGRL N   LM  + K+ RV++R  P APH VL VL
Sbjct: 185 PAAVMFDALQAAKRRGMDVLLCDTAGRLQNKVNLMEELNKIYRVIRREIPEAPHEVLLVL 244

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQNAL Q ++F    G TGL++TK+DGTA+GG ++ I     IPV F+G+GE ++D
Sbjct: 245 DATTGQNALTQAKLFGDKTGLTGLVLTKLDGTAKGGIVVAIRQELDIPVKFVGLGEKMDD 304

Query: 298 LEPFVAKDFSAVITGCLDYGEEK 320
           L+ F ++ F   + G     EEK
Sbjct: 305 LQKFDSEQFVHALFGKWIAEEEK 327


>gi|332827122|gb|EGJ99907.1| signal recognition particle-docking protein FtsY [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 317

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/297 (44%), Positives = 187/297 (62%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T   +   ++ +I+ + ++DD V ++LE++LI SD+GV    KI+E +  KR 
Sbjct: 15  LDKGLEKTKESMFSKLSRVIAGKSKVDDDVLDQLEEVLIMSDVGVNTTLKIIERI-EKRA 73

Query: 76  AKDVSVQ-RVLYDV-SELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129
           AKD  V  + L ++  E I  +L   +   N DFS     +P+VI+VVGVNGVGKTT IG
Sbjct: 74  AKDKYVDDKELKNILREEIADLLTENNAVDNDDFSVPETAKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     +   +GSD A++A++    A
Sbjct: 134 KLANQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVIKQAMGSDPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           ++   DV+IIDTAGRLHN   LM  + K+ +V+ ++ P APH VL VLD +TGQNA  Q 
Sbjct: 194 KSNNADVVIIDTAGRLHNKIGLMNELSKIKKVMDKIVPGAPHEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F A    T L +TK+DGTA+GG +I I    KIPV ++G+GEGI+DL+ F  ++F
Sbjct: 254 TQFTAATDVTALAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIDDLQVFRRREF 310


>gi|323524665|ref|YP_004226818.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           CCGE1001]
 gi|323381667|gb|ADX53758.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           CCGE1001]
          Length = 386

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 135/308 (43%), Positives = 185/308 (60%), Gaps = 7/308 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G + TS  L    T I    ++D+ + EELE  L+ SD GV   + +
Sbjct: 85  ASAKRSWLTRLKTGLSKTSSSL----TGIFVGTKIDEDLYEELETALLMSDAGVDATEFL 140

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E L  K R  +    Q+V   +  L+  +L PL K      + +P V+++ GVNG GKT
Sbjct: 141 LEALREKVRAERLTEPQQVKAALRALLVDLLKPLEKSLMLGRA-KPLVVMIAGVNGAGKT 199

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A
Sbjct: 200 TSIGKLAKHLQSFNQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVAQESG-DPAAVIFDA 258

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 259 VGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNA 318

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++
Sbjct: 319 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEE 378

Query: 306 FSAVITGC 313
           FS  + G 
Sbjct: 379 FSDALLGA 386


>gi|332751432|gb|EGJ81835.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           2747-71]
          Length = 262

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/252 (44%), Positives = 166/252 (65%), Gaps = 2/252 (0%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+GV   +KI+  L      K +     LY +  E + ++L  + +P N +    P VI
Sbjct: 3   ADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVI 61

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    
Sbjct: 62  LMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT 121

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D+A++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+
Sbjct: 122 GADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVM 181

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
             +DA+TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE 
Sbjct: 182 LTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGER 241

Query: 295 INDLEPFVAKDF 306
           I DL PF A DF
Sbjct: 242 IEDLRPFKADDF 253


>gi|254369795|ref|ZP_04985805.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122754|gb|EDO66883.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 343

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 191/302 (63%), Gaps = 2/302 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ D+ + E++E  L+ +DIGV    +IV  L  K 
Sbjct: 42  RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADIGVEATDEIVTYLRDKV 101

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              ++     L  +  + + ++++P  KP   D    P VILVVGVNGVGKTT IGKL+K
Sbjct: 102 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 161

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ Y A   A++K 
Sbjct: 162 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSASVIYNAIGSAKSKG 221

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG NAL Q E F+
Sbjct: 222 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALNQAEAFN 281

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F A+DF+  +   
Sbjct: 282 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFTTALFNS 341

Query: 314 LD 315
            D
Sbjct: 342 ND 343


>gi|317503241|ref|ZP_07961299.1| cell division protein FtsY [Prevotella salivae DSM 15606]
 gi|315665654|gb|EFV05263.1| cell division protein FtsY [Prevotella salivae DSM 15606]
          Length = 316

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/297 (43%), Positives = 187/297 (62%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T   +   +T  ++ + ++DD V + LE++LI SD+GV    KI+E + + R 
Sbjct: 15  LDKGLEKTKESVFSKLTRAVAGKSKVDDEVLDNLEEVLITSDVGVDTTLKIIERIES-RV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFN--WDF--SHRPHVILVVGVNGVGKTTVIG 129
           A+D  VS   +   + E I  +L   +   N  WD    H+P+VILVVGVNGVGKTT IG
Sbjct: 74  ARDKYVSTSELNGILREEIASLLSENNSDDNDSWDLPSDHKPYVILVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +  +AG KV L A DTFR+AA++Q+ IW DR     V  ++GSD A++A++  + A
Sbjct: 134 KLAYQFKNAGKKVYLGAADTFRAAAVEQISIWGDRVGVPVVKQQMGSDPASVAFDTLQSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  V+ VLD +TGQNA  Q 
Sbjct: 194 KANGADVVLIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPDEVMLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GE + DL+ F  K+F
Sbjct: 254 KQFSAVTNITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEKMEDLQLFNRKEF 310


>gi|89256930|ref|YP_514292.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. holarctica LVS]
 gi|290953990|ref|ZP_06558611.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295312609|ref|ZP_06803361.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144761|emb|CAJ80096.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. holarctica LVS]
          Length = 331

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 191/302 (63%), Gaps = 2/302 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ D+ + E++E  L+ +D+GV    +IV  L  K 
Sbjct: 30  RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVTYLCDKV 89

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              ++     L  +  + + ++++P  KP   D    P VILVVGVNGVGKTT IGKL+K
Sbjct: 90  ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 149

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ Y A   A++K 
Sbjct: 150 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSASVIYNAIGSAKSKG 209

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG NAL Q E F+
Sbjct: 210 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALNQAEAFN 269

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F A+DF+  +   
Sbjct: 270 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFTTALFNS 329

Query: 314 LD 315
            D
Sbjct: 330 ND 331


>gi|88811310|ref|ZP_01126565.1| signal recognition particle receptor FtsY [Nitrococcus mobilis
           Nb-231]
 gi|88791199|gb|EAR22311.1| signal recognition particle receptor FtsY [Nitrococcus mobilis
           Nb-231]
          Length = 357

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 137/308 (44%), Positives = 194/308 (62%), Gaps = 14/308 (4%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           Q+  +    W+ +L  G   T      G + +   R+ +D+ + EELE LL+ +D+GV  
Sbjct: 44  QEEGAPRTGWLIRLHSGLRKTG----SGFSSLFLGRKAIDEELLEELETLLLMADVGVEA 99

Query: 63  AQKIVEELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            Q IV+ L  +    + A  +++Q  L D  E+I  +L P ++    D +H P+V+L VG
Sbjct: 100 TQCIVDNLTERLKRNQLADAMALQNALRD--EMI-AILAPCTQALVID-TH-PYVMLTVG 154

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL +++ D G +VMLAAGDTFR+AA++QLKIW +R     +    GSDA
Sbjct: 155 VNGVGKTTTIGKLGRRLQDNGYEVMLAAGDTFRAAAVEQLKIWGERGDIPVIAQPTGSDA 214

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+A + A A+ +DVLI DTAGRLH  S LM  + K+ RVL + D  APH VL V+D
Sbjct: 215 ASVIYDAHQAAFARGIDVLIADTAGRLHTQSNLMEELKKIKRVLSKQDSSAPHEVLLVVD 274

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A+TGQNAL Q   FHA  G TG+ +TK+DGTA+GG +  I     +P+  +GVGE + DL
Sbjct: 275 ASTGQNALAQARQFHAAVGVTGIALTKLDGTAKGGVIFAIAQQLGLPIRCIGVGEQLEDL 334

Query: 299 EPFVAKDF 306
            PF A++F
Sbjct: 335 RPFTAEEF 342


>gi|67643445|ref|ZP_00442191.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei GB8 horse 4]
 gi|121600561|ref|YP_991446.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei SAVP1]
 gi|124383927|ref|YP_001027477.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei NCTC 10229]
 gi|126448883|ref|YP_001082444.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei NCTC 10247]
 gi|167001053|ref|ZP_02266854.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei PRL-20]
 gi|254175216|ref|ZP_04881877.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei ATCC 10399]
 gi|254201698|ref|ZP_04908062.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei FMH]
 gi|254207032|ref|ZP_04913383.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei JHU]
 gi|254357511|ref|ZP_04973785.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei 2002721280]
 gi|121229371|gb|ABM51889.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei SAVP1]
 gi|124291947|gb|ABN01216.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei NCTC 10229]
 gi|126241753|gb|ABO04846.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei NCTC 10247]
 gi|147747592|gb|EDK54668.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei FMH]
 gi|147752574|gb|EDK59640.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei JHU]
 gi|148026575|gb|EDK84660.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei 2002721280]
 gi|160696261|gb|EDP86231.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei ATCC 10399]
 gi|238524797|gb|EEP88228.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei GB8 horse 4]
 gi|243063123|gb|EES45309.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei PRL-20]
          Length = 439

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/302 (43%), Positives = 187/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ L 
Sbjct: 144 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 199

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K F    + +P V+++ GVNG GKTT IGK
Sbjct: 200 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSFVLGRA-QPLVMMIAGVNGAGKTTSIGK 258

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 259 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 317

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 318 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 377

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 378 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 437

Query: 311 TG 312
            G
Sbjct: 438 LG 439


>gi|49483398|ref|YP_040622.1| cell division protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282903789|ref|ZP_06311677.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905553|ref|ZP_06313408.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908528|ref|ZP_06316358.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|283957977|ref|ZP_06375428.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|295427721|ref|ZP_06820353.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591320|ref|ZP_06949958.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           MN8]
 gi|49241527|emb|CAG40213.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282327590|gb|EFB57873.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330845|gb|EFB60359.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595407|gb|EFC00371.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790126|gb|EFC28943.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|295128079|gb|EFG57713.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576206|gb|EFH94922.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           MN8]
 gi|315194123|gb|EFU24516.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 416

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/297 (43%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++IS  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLISRYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|304404218|ref|ZP_07385880.1| signal recognition particle-docking protein FtsY [Paenibacillus
           curdlanolyticus YK9]
 gi|304347196|gb|EFM13028.1| signal recognition particle-docking protein FtsY [Paenibacillus
           curdlanolyticus YK9]
          Length = 331

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/320 (40%), Positives = 197/320 (61%), Gaps = 3/320 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           + +AS++ +       G A T   + E + ++I+ R+ +D+   EELE++LI +D+GV  
Sbjct: 9   ETIASKTEAVTNIFKDGLAKTRTAIVEKVEELITRRKKIDEAFFEELEEILIGADVGVNT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             +++++L  +  A+ +     L  V SE + ++L  +  P          VIL VGVNG
Sbjct: 69  VMQLIDDLRAEVKARKIEDASDLQPVLSEKLVEILKGVDDPELHMAESGMTVILFVGVNG 128

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W  R   D +    G+D AA+
Sbjct: 129 VGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGQRVGVDVIKQSAGADPAAV 188

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A + A+ + VDVL+ DTAGRL N + LM  + K+ RV++R  P APH VL VLDATT
Sbjct: 189 MYDAVQAAKQRSVDVLLCDTAGRLQNKTNLMDELNKIFRVIQREVPTAPHEVLLVLDATT 248

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q ++F   +G TGL++TK+DGTA+GG +I I     +PV  +G+GE ++DL+ F
Sbjct: 249 GQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIIIAIRNELNLPVKLVGLGEKMDDLQQF 308

Query: 302 VAKDF-SAVITGCLDYGEEK 320
            +  F  A+  G +   +E+
Sbjct: 309 DSDQFVHALFAGLIQKKDEE 328


>gi|134301331|ref|YP_001121299.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|187931064|ref|YP_001891048.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|224456359|ref|ZP_03664832.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|134049108|gb|ABO46179.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|187711973|gb|ACD30270.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|282158413|gb|ADA77804.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 331

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ D+ + E++E  L+ +D+GV    +IV  L  K 
Sbjct: 30  RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVTYLRDKV 89

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              ++     L  +  + + ++++P  KP   D    P VILVVGVNGVGKTT IGKL+K
Sbjct: 90  ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 149

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ Y+A   A++K 
Sbjct: 150 KLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSASVIYDAIGSAKSKG 209

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG NAL Q E F+
Sbjct: 210 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALNQAEAFN 269

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F A+DF+  +   
Sbjct: 270 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFTTALFNS 329

Query: 314 LD 315
            D
Sbjct: 330 ND 331


>gi|238899311|ref|YP_002924994.1| cell division protein: membrane binding (N-terminal); GTPase domain
           (C-terminal) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229467072|gb|ACQ68846.1| cell division protein: membrane binding (N-terminal); GTPase domain
           (C-terminal) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 375

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 187/299 (62%), Gaps = 2/299 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E   +  +L      T   L  G  ++   +++DD + EELE+ L+ +D+GV   QKI++
Sbjct: 66  EKAGFFTRLKNSLKKTKQYLGTGFIELFKGKKIDDDLFEELEEQLLMADVGVETTQKIID 125

Query: 69  ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L T    K +     LY  + E +  ++  + +P     +  P+VIL+VGVNGVGKTT 
Sbjct: 126 SLTTHSSKKQLKEASGLYVKLKEEMLSIISKVEQPLKVS-NKSPYVILMVGVNGVGKTTT 184

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ ++   GL V+LAAGDTFR+AA +QLKIW +R     V    G+D+A++ ++A +
Sbjct: 185 IGKLAHQLRQQGLSVLLAAGDTFRAAATEQLKIWGERNQIPVVAQHDGADSASVIFDAVQ 244

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +DV++ DTAGRL N + LM  + K++RV+K+     PH V+ VLDA+TGQNA+ 
Sbjct: 245 SAKARGIDVVLADTAGRLQNKTHLMEELKKIVRVMKKWGEEFPHEVMLVLDASTGQNAIN 304

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++FH     TGL++TK+DG+A+GG +  I     IP+ ++GVGE I DL PF A DF
Sbjct: 305 QTKLFHETVPLTGLVLTKLDGSAKGGIIFAIADQFGIPIRYIGVGEKIEDLRPFNAGDF 363


>gi|27467828|ref|NP_764465.1| signal recognition particle [Staphylococcus epidermidis ATCC 12228]
 gi|27315373|gb|AAO04507.1|AE016747_4 signal recognition particle [Staphylococcus epidermidis ATCC 12228]
 gi|329724316|gb|EGG60828.1| signal recognition particle-docking protein FtsY [Staphylococcus
           epidermidis VCU144]
 gi|329736323|gb|EGG72595.1| signal recognition particle-docking protein FtsY [Staphylococcus
           epidermidis VCU028]
          Length = 408

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 183/299 (61%), Gaps = 12/299 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G     K+ +EL T+ 
Sbjct: 83  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEA 142

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             +++   +   D+ E+I + ++ +       S+  N +   R +VIL+VGVNGVGKTT 
Sbjct: 143 QRRNI---QETEDLREVIVEKIVEIYHQEDDHSEAMNIE-DGRLNVILMVGVNGVGKTTT 198

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G KVMLAAGDTFR+ AI QL +W +R   + V    GSD AA+ Y+A  
Sbjct: 199 IGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDPAAVVYDAIN 258

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LDATTGQNAL 
Sbjct: 259 AAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLDATTGQNALS 318

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 319 QARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDLQPFNPESY 377


>gi|167756880|ref|ZP_02429007.1| hypothetical protein CLORAM_02429 [Clostridium ramosum DSM 1402]
 gi|237734590|ref|ZP_04565071.1| signal recognition particle-docking protein ftsY [Mollicutes
           bacterium D7]
 gi|167703055|gb|EDS17634.1| hypothetical protein CLORAM_02429 [Clostridium ramosum DSM 1402]
 gi|229382410|gb|EEO32501.1| signal recognition particle-docking protein ftsY [Coprobacillus sp.
           D7]
          Length = 327

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/323 (41%), Positives = 194/323 (60%), Gaps = 11/323 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K   +S     K   G   ++    + I ++ +  R ++D   EELE++LI SD+GV++
Sbjct: 9   EKFVGKSAKQNEKYVAGLDRSNSTFSDRINELAARFREINDEYFEELENILIMSDVGVSM 68

Query: 63  AQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             KIVEE+  +   ++++    +  ++ D   +I+     ++   N+       VIL+VG
Sbjct: 69  VMKIVEEIKNEVRLQNITDPKEINEIIVDKMFVIYANDSVMTTKINY-AEEGLTVILMVG 127

Query: 119 VNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           VNG GKTT IGKL+ ++ +D G KVM+AAGDTFR+ AIDQL +WA R   D V  + G D
Sbjct: 128 VNGAGKTTTIGKLANRIVNDEGKKVMVAAGDTFRAGAIDQLAVWAQRVGVDIVKGKEGGD 187

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            +A+ ++A KQA+ K VDVLI DTAGRL N   LM  + KM R++KR  P APH  L V+
Sbjct: 188 PSAVVFDALKQAKEKNVDVLICDTAGRLQNKVNLMNELEKMNRIIKREVPDAPHETLLVI 247

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN + Q   F  +   +GL++TKMDGTA+GG ++ I     IPV F+G+GE ++D
Sbjct: 248 DATTGQNGVSQAVEFSKITDVSGLVLTKMDGTAKGGIVLSIKDQLNIPVKFIGLGESVDD 307

Query: 298 LEPFVAKDFSAVITG-CLDYGEE 319
           L+ F   D    I G C +  EE
Sbjct: 308 LQEF---DLDQYIYGLCKNLVEE 327


>gi|167630242|ref|YP_001680741.1| signal recognition particle-docking protein ftsy [Heliobacterium
           modesticaldum Ice1]
 gi|167592982|gb|ABZ84730.1| signal recognition particle-docking protein ftsy [Heliobacterium
           modesticaldum Ice1]
          Length = 304

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/302 (43%), Positives = 193/302 (63%), Gaps = 4/302 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G   T   L E +  +++ R ++D+ + EELE+ LI +D+G   +  +VE L 
Sbjct: 5   FFSRLKEGLTRTRQNLVEKVEALVTGRPKIDEELFEELEEALISADVGADTSLDLVERLR 64

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
               A+ +     + D+  E + ++L   ++P  +D  H+P V+L+VGVNGVGKTT I K
Sbjct: 65  QTVKAQKIGDPARIKDLLQEEVARILGEQAQPVAFD--HQPTVVLIVGVNGVGKTTTIAK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    G KV+LAAGDTFR+AAIDQL+IW  R   + +  + GSD +A+A++A + A 
Sbjct: 123 LAHRWKQEGRKVLLAAGDTFRAAAIDQLEIWGQRVGVEVIRHQEGSDPSAVAFDAVQAAV 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++ VDVLIIDTAGRLHN S LM  + K+ RVL R  P APH  L VLDATTGQNA+ Q  
Sbjct: 183 SRGVDVLIIDTAGRLHNKSHLMNELSKINRVLDRALPGAPHETLLVLDATTGQNAVSQAR 242

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F    G TGL++TK+DGTA+GG ++ I    + PV F+G+GE ++DL  F   +F+  +
Sbjct: 243 LFSEAVGLTGLVLTKLDGTAKGGVILAIAAEMQAPVKFIGIGEKMDDLRDFDPPEFARAL 302

Query: 311 TG 312
            G
Sbjct: 303 FG 304


>gi|227513459|ref|ZP_03943508.1| signal recognition particle-docking protein FtsY [Lactobacillus
           buchneri ATCC 11577]
 gi|227083332|gb|EEI18644.1| signal recognition particle-docking protein FtsY [Lactobacillus
           buchneri ATCC 11577]
          Length = 481

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/316 (41%), Positives = 190/316 (60%), Gaps = 20/316 (6%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           + + ASES   I+   KG A +     + +  ++++ R +D+   ++LED+LI SD+G  
Sbjct: 163 DSETASES-GAIQSYEKGLAKSRSSFGQKLNALLANFRHVDESFFDDLEDMLIESDVGFE 221

Query: 62  VAQKIV----EELLTKRYAKDVSVQRV-------LYDVSELIHKMLMPLSKPFNWDFSHR 110
            + KI     EE+  +   K   VQ V       +YD +       + L+K         
Sbjct: 222 TSMKIADDLREEVKLQNAKKPKDVQNVIVKKLIDMYDQAGNGENPAINLAK-------SG 274

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VIL+VGVNGVGKTT IGK++K   D G KV+LAA DTFR+ AI+QL +WA R   D V
Sbjct: 275 PTVILMVGVNGVGKTTTIGKMAKMYKDQGKKVVLAAADTFRAGAIEQLNVWAQRDGVDIV 334

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S+  SD +++A++A K+A+ +  D+L++DTAGRL N   LM  + KM ++L R  P  P
Sbjct: 335 KSKPKSDPSSVAFDAVKKARDEHYDILMVDTAGRLQNKVNLMNELSKMKKILTREIPEGP 394

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H VL VLDATTGQNA+ Q +MF      TG+++TK+DGTARGG ++ I     +PV ++G
Sbjct: 395 HEVLLVLDATTGQNAMTQAKMFKETTDVTGIVLTKLDGTARGGIVLAIRSELHLPVKYVG 454

Query: 291 VGEGINDLEPFVAKDF 306
           +GE + DL+PF   DF
Sbjct: 455 LGEKVTDLKPFDPNDF 470


>gi|325955098|ref|YP_004238758.1| signal recognition particle-docking protein FtsY [Weeksella virosa
           DSM 16922]
 gi|323437716|gb|ADX68180.1| signal recognition particle-docking protein FtsY [Weeksella virosa
           DSM 16922]
          Length = 320

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 128/311 (41%), Positives = 191/311 (61%), Gaps = 15/311 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDIGV 60
           +SW +K         L +G   +   L + I+  ++   ++DD V ++LE++LI SD+GV
Sbjct: 1   MSWFKKILGKESKEKLDEGLEKSKQSLFDKISRTVVGKSKVDDEVLDDLEEVLISSDVGV 60

Query: 61  A----VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVIL 115
                + ++I E +   +Y     + ++L + ++ L+ +  +  +  F       P VI+
Sbjct: 61  ETTVNIIRRIEERVARDKYVSTSELNKILREEIAGLLAENNIDDTDGFQIPKKDHPFVIM 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT IGKL+ +    GLKV+L A DTFR+AA+DQL IWA+R     V   +G
Sbjct: 121 VVGVNGVGKTTTIGKLAAQFKAKGLKVVLGAADTFRAAAVDQLVIWAERADVPIVKQAMG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++AY+  + A A+K DV++IDTAGRLHN   LM  + K+ RV++++ P APH VL 
Sbjct: 181 SDPASVAYDTVQSAVAQKADVVLIDTAGRLHNKVNLMNELTKIKRVMQKVIPDAPHEVLL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++GVGEGI
Sbjct: 241 VLDGSTGQNAFEQAKQFTQATEVTSMAVTKLDGTAKGGVVIGISDQFKIPVKYIGVGEGI 300

Query: 296 NDLEPFVAKDF 306
           +DL+ F   +F
Sbjct: 301 HDLQAFNKMEF 311


>gi|118498159|ref|YP_899209.1| cell division protein, signal recognition particle GTPase
           [Francisella tularensis subsp. novicida U112]
 gi|118424065|gb|ABK90455.1| cell division protein, signal recognition particle GTPase
           [Francisella novicida U112]
          Length = 331

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 124/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ D+ + E++E  L+ +D+GV    +IV  L  K 
Sbjct: 30  RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVAYLRDKV 89

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              ++     L  +  + + ++++P  KP   D    P VILVVGVNGVGKTT IGKL+K
Sbjct: 90  ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 149

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+   G  V+LAAGDTFR+AA++QL+ W +R +   V    G+D+A++ Y+A   A++K 
Sbjct: 150 KLQSQGKSVILAAGDTFRAAAVEQLREWGNRNNTHVVYQHEGADSASVIYDAISSAKSKG 209

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG NAL Q E F+
Sbjct: 210 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALSQAEAFN 269

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F A+DF+  +   
Sbjct: 270 QIVNLTGITITKLDGTAKGGIVFSIAKKLSLPLRFIGVGEKIDDLQVFNARDFTTALFNS 329

Query: 314 LD 315
            D
Sbjct: 330 ND 331


>gi|167822657|ref|ZP_02454128.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 9]
          Length = 347

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  L 
Sbjct: 52  SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 107

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   + EL+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 108 EKVRAGRLTDPQQVKDALRELLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 166

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 167 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 225

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 226 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 285

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 286 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 345

Query: 311 TG 312
            G
Sbjct: 346 LG 347


>gi|194324332|ref|ZP_03058105.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. novicida FTE]
 gi|194321397|gb|EDX18882.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. novicida FTE]
          Length = 343

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 124/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ D+ + E++E  L+ +D+GV    +IV  L  K 
Sbjct: 42  RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVAYLRDKV 101

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              ++     L  +  + + ++++P  KP   D    P VILVVGVNGVGKTT IGKL+K
Sbjct: 102 ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 161

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+   G  V+LAAGDTFR+AA++QL+ W +R +   V    G+D+A++ Y+A   A++K 
Sbjct: 162 KLQSQGKSVILAAGDTFRAAAVEQLREWGNRNNTHVVYQHEGADSASVIYDAISSAKSKG 221

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG NAL Q E F+
Sbjct: 222 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALSQAEAFN 281

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F A+DF+  +   
Sbjct: 282 QIVNLTGITITKLDGTAKGGIVFSIAKKLSLPLRFIGVGEKIDDLQVFNARDFTTALFNS 341

Query: 314 LD 315
            D
Sbjct: 342 ND 343


>gi|114331516|ref|YP_747738.1| signal recognition particle-docking protein FtsY [Nitrosomonas
           eutropha C91]
 gi|114308530|gb|ABI59773.1| signal recognition particle-docking protein FtsY [Nitrosomonas
           eutropha C91]
          Length = 345

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 127/315 (40%), Positives = 194/315 (61%), Gaps = 11/315 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++  ES+S+  K+ +G   T  +  + ++ +   R++D+ + EELE  L+ +D G+    
Sbjct: 31  RIEVESVSFADKIRQGLTRTRQQFGKQLSGLFGGRKIDEDLYEELETALLTADTGIQATN 90

Query: 65  KIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +++E L T  KR A D S Q +   + + + ++L PL +P      H+P VI++ GVNGV
Sbjct: 91  RLLESLRTRVKRDALDDSKQ-LKTALQDALTELLQPLERPL-VTTGHKPFVIMIAGVNGV 148

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS----DA 178
           GKTT IGKL+      G  V+LAAGDTFR+AA +QLKIW +R     +  E       D 
Sbjct: 149 GKTTTIGKLAHYFQSQGHSVLLAAGDTFRAAAQEQLKIWGERNQITVISQESDPGKKGDP 208

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   A A+K+D+++ DTAGRL     LM  I K+ RV+ +  P APH VL VLD
Sbjct: 209 AAVIFDAVNAAIARKIDIVLADTAGRLTTQLHLMEEIKKIKRVVAKAIPDAPHEVLLVLD 268

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV---VTHKIPVYFLGVGEGI 295
           A TGQNA+ Q++ F+   G TGL+MTK+DGTA+GG +  I    V + + + F+G+GEG+
Sbjct: 269 ANTGQNAVSQLKAFNDALGVTGLVMTKLDGTAKGGVIAAIAAQFVDNPLALRFIGMGEGL 328

Query: 296 NDLEPFVAKDFSAVI 310
           +DL PF A++F+  +
Sbjct: 329 DDLRPFNAREFAEAL 343


>gi|67459630|ref|YP_247254.1| Signal recognition particle-docking protein FtsY [Rickettsia felis
           URRWXCal2]
 gi|75535973|sp|Q4UK46|FTSY_RICFE RecName: Full=Cell division protein ftsY homolog
 gi|67005163|gb|AAY62089.1| Signal recognition particle-docking protein FtsY [Rickettsia felis
           URRWXCal2]
          Length = 303

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/303 (43%), Positives = 192/303 (63%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ +GI  I   ++LD    EELE+LLI SD+ V+V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISKGIDKIFYKKKLDTETLEELEELLIASDMSVSVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   ++ELI + L     PF  +  ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAELIEQQLSKSEIPFTLN-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G KV +AA DTFR+AA++QL  W DR +A  +  E  +D A++AY A +++ 
Sbjct: 121 LAAMYGMQGKKVAVAACDTFRAAAVNQLSTWVDRANALLITGEESADPASVAYRAMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HSVL V+DA TGQN   QV
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VIDAITGQNTYNQV 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TGLI+TK+DG+A+ G L+ +V    +PVYF+G+GE I DL+ F   DF+  
Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVLVGVVQKFNLPVYFIGIGEKIEDLKIFNRHDFAKS 299

Query: 310 ITG 312
           + G
Sbjct: 300 LVG 302


>gi|186475077|ref|YP_001856547.1| signal recognition particle-docking protein FtsY [Burkholderia
           phymatum STM815]
 gi|184191536|gb|ACC69501.1| signal recognition particle-docking protein FtsY [Burkholderia
           phymatum STM815]
          Length = 392

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 135/307 (43%), Positives = 185/307 (60%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A+   SW+ +L  G + TS      IT I    R+D+ + EELE  L+ SD GV   + +
Sbjct: 92  AAARRSWLTRLRSGLSKTS----SSITGIFVGTRIDEDLYEELETALLMSDAGVDATEYL 147

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E L  K R  +    Q+V   +  L+  +L PL K       H P V+++ GVNG GKT
Sbjct: 148 LETLREKVRSERLTDPQQVKSALRTLLVDLLKPLEKSLTLGHYH-PTVMMIAGVNGAGKT 206

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K M      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A
Sbjct: 207 TSIGKLAKHMQRFNQSVLLAAGDTFRAAAREQLAIWGERNNVMVVQQESG-DPAAVIFDA 265

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K++V++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 266 VGAARARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAMAGAPHEVLLVIDANTGQNA 325

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++
Sbjct: 326 LAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEE 385

Query: 306 FSAVITG 312
           FS  + G
Sbjct: 386 FSDALLG 392


>gi|319638771|ref|ZP_07993530.1| cell division protein FtsY [Neisseria mucosa C102]
 gi|317400012|gb|EFV80674.1| cell division protein FtsY [Neisseria mucosa C102]
          Length = 510

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 127/308 (41%), Positives = 187/308 (60%), Gaps = 14/308 (4%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V  + LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+     
Sbjct: 204 VEEQKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEAT-- 261

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVG 118
              E L K     VS+ + L D +EL       ++ ++ PL KP     +  P VI++ G
Sbjct: 262 ---EYLMKDVRDRVSL-KGLKDGNELRGALKDALYDLVKPLEKPLVLPETKEPFVIMLAG 317

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           +NG GKTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+
Sbjct: 318 INGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNV-TVISQTTGDS 376

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLD
Sbjct: 377 AAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLD 436

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQNA+ QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL
Sbjct: 437 ANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDL 496

Query: 299 EPFVAKDF 306
            PF AK F
Sbjct: 497 RPFNAKAF 504


>gi|254456325|ref|ZP_05069754.1| signal recognition particle-docking protein FtsY [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083327|gb|EDZ60753.1| signal recognition particle-docking protein FtsY [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 305

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 184/296 (62%), Gaps = 7/296 (2%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY--AK 77
           GF  ++     G+ DI+  + +DD   + +E+ LI+SD+GV  A +I E +   +    K
Sbjct: 10  GFKKSASAFTSGLRDIVVKKEIDDKTLDRIEEYLIQSDVGVVAASEIKEIITDSKIDPNK 69

Query: 78  DVS--VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           D++  ++ +L D    I  ++ PL     ++   +    L+ GVNGVGKTT IGK+SK +
Sbjct: 70  DIADEIRTILKD---YIISLMKPLENNNFFNKKEKISATLISGVNGVGKTTTIGKISKIL 126

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KVMLAA DTFR+AAI+QL+ WA++   +   S  G+D A++A++A ++A A   D
Sbjct: 127 KANGNKVMLAASDTFRAAAIEQLENWANKVDVEITKSSQGADPASVAFKAIEEAIANNFD 186

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
            ++IDTAGRL N   LM    K+  V K++DP APH V+ VLDAT+GQN + QVE F+ +
Sbjct: 187 QVLIDTAGRLQNKKNLMEEYKKIANVTKKMDPEAPHDVILVLDATSGQNVINQVEEFNKI 246

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              TGLIMTK+DGTA+GG L+ +    K+P+  LG+GE  +DL+ F A+ F+   T
Sbjct: 247 IPITGLIMTKLDGTAKGGILLAVAKKFKLPIIALGLGEKEDDLQIFEAEKFAEAFT 302


>gi|172057912|ref|YP_001814372.1| signal recognition particle-docking protein FtsY [Exiguobacterium
           sibiricum 255-15]
 gi|171990433|gb|ACB61355.1| signal recognition particle-docking protein FtsY [Exiguobacterium
           sibiricum 255-15]
          Length = 334

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/321 (43%), Positives = 201/321 (62%), Gaps = 12/321 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S Q+V S       K T+G   T   L   + D++   R +D+   EELE++LI++D+GV
Sbjct: 14  STQEVTS-------KFTEGLTKTRDGLANAVNDLVYRFREVDEDFFEELEEVLIQADVGV 66

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
                +VE+L  +   K+V   + + DV  E++  ML+   +    D SH  +VIL VGV
Sbjct: 67  TTTMDLVEKLKVEVKRKNVKDTKEVRDVLVEVVANMLVEEEES-ELDLSHELNVILFVGV 125

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ ++ + G  VMLAAGDTFR+ AIDQL++W +R+    +    GSD A
Sbjct: 126 NGVGKTTTIGKLANRLKNEGKTVMLAAGDTFRAGAIDQLQVWGERSGVPVIRQGEGSDPA 185

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A + A+A++VDVLI DTAGRL N   LM  + K+ RV++R  P APH VL  LDA
Sbjct: 186 AVIYDAVQAAKARRVDVLICDTAGRLQNKVNLMNELEKVKRVIEREIPGAPHEVLLALDA 245

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F      +G+++TK+DGTA+GG ++ I     +PV F+G+GE I+DL+
Sbjct: 246 TTGQNAMVQAKAFKQATDVSGIVLTKLDGTAKGGIVLAIKNELDLPVKFVGLGEKIDDLQ 305

Query: 300 PFVAKDFSAVITGCLDYGEEK 320
           PF A+ F   + G  D  EEK
Sbjct: 306 PFDAEQFVYGLFG--DVFEEK 324


>gi|332880087|ref|ZP_08447771.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332682083|gb|EGJ54996.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 320

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 123/278 (44%), Positives = 179/278 (64%), Gaps = 7/278 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-----VSVQRVLYD-V 88
           II   ++D+ V ++LE++LI SD+GV    KI+E +   R AKD       + ++L + +
Sbjct: 37  IIGKSKVDEEVLDDLEEVLIASDVGVNTTLKIIERI-EARVAKDKYLGTSELNKILREEI 95

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             L+ +     +  F+     +P+V++VVGVNG GKTT IGKL+ + +  GLKV+L A D
Sbjct: 96  GSLLSETHTGEATDFSLPADKKPYVMMVVGVNGAGKTTTIGKLASQFTKKGLKVVLGAAD 155

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+AAIDQL++WADRT    +  ++GSD A++AY+    A  +  DV+IIDTAGRLHN 
Sbjct: 156 TFRAAAIDQLQVWADRTGVPMIKQQLGSDPASVAYDTLTSAVKQGADVVIIDTAGRLHNK 215

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  + K+ RV++++   APH VL VLD +TGQNA  Q + F      T L +TK+DG
Sbjct: 216 INLMNELSKIKRVMQKVIADAPHEVLLVLDGSTGQNAFEQAKEFTKATEVTALAVTKLDG 275

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TA+GG +I I    +IPV ++GVGEGI+DL+ F   +F
Sbjct: 276 TAKGGVVIGISDQFQIPVKYIGVGEGIDDLQIFNKYEF 313


>gi|327441088|dbj|BAK17453.1| signal recognition particle GTPase [Solibacillus silvestris
           StLB046]
          Length = 414

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 129/318 (40%), Positives = 192/318 (60%), Gaps = 16/318 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S  +K   G   T       + D+++  R++D+   EELED+L+++D+G     +++++L
Sbjct: 97  SITQKFKAGLEKTRNSFTSKVNDLVARYRKVDEDFFEELEDVLLQADVGFETVMELMDKL 156

Query: 71  ---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              + ++  KD +     +   L ++ E   + L  L+   + D +    VIL VGVNGV
Sbjct: 157 RFEVQRQNIKDTNGIQAIISEKLVEIYESGEENLTELNIQQSGDLT----VILFVGVNGV 212

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ ++   G  VMLAAGDTFR+ AI+QL++W DR   + +    GSD AA+ 
Sbjct: 213 GKTTTIGKLAHRLKSEGKSVMLAAGDTFRAGAIEQLQVWGDRVGVEVIAQSEGSDPAAVM 272

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+ + VD+LI DTAGRL N   LM  + K+ RV+ R  P APH VL  LDATTG
Sbjct: 273 YDAIRAAKNRGVDILICDTAGRLQNKVNLMNELEKVHRVISREIPDAPHEVLLALDATTG 332

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q +MF      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL+PF 
Sbjct: 333 QNALVQAQMFKEATNVTGIVLTKLDGTAKGGIVLAIRNKLHIPVKFVGLGEKMDDLQPFD 392

Query: 303 AKDFSAVITGCLDYGEEK 320
           A+ +   + G    G EK
Sbjct: 393 AERY---VYGLFAEGLEK 407


>gi|237810765|ref|YP_002895216.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei MSHR346]
 gi|237505520|gb|ACQ97838.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei MSHR346]
          Length = 438

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 131/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  L 
Sbjct: 143 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 198

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   + EL+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 199 EKVRAGRLTDPQQVKDALRELLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 257

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 258 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 316

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 317 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 376

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 377 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 436

Query: 311 TG 312
            G
Sbjct: 437 LG 438


>gi|34540014|ref|NP_904493.1| signal recognition particle-docking protein FtsY [Porphyromonas
           gingivalis W83]
 gi|188994128|ref|YP_001928380.1| signal recognition particle-docking protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|34396325|gb|AAQ65392.1| signal recognition particle-docking protein FtsY [Porphyromonas
           gingivalis W83]
 gi|188593808|dbj|BAG32783.1| signal recognition particle-docking protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 317

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 187/297 (62%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L +G + T   +   IT  ++ + ++DD V +ELE++L+ SD+GV    KI++ +  +R 
Sbjct: 15  LDEGLSKTKENVFAKITRAVAGKSKVDDEVLDELENVLVTSDVGVDTTLKIIKRI-EERV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A+D  VS   +   + + I  +L          F+     +P+VI+VVGVNGVGKTT IG
Sbjct: 74  ARDKYVSTSELTTILRQEIASLLTENGSADGDSFDLPSGTKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V+L A DTFR+AA++QL+IW++R     +  ++GSD A++AY+    A
Sbjct: 134 KLAHRFRQAGKSVVLGAADTFRAAAVEQLEIWSERVGVPIIKQQMGSDPASVAYDTVSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A  VDV+IIDTAGRLHN   LM  + K+ RV++++ P APH +L VLD +TGQNA  Q 
Sbjct: 194 VANGVDVVIIDTAGRLHNKVNLMNELTKIKRVMQKVVPDAPHEILLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F A      L +TK+DGTA+GG +I I    KIPV ++G+GEGI+DL+ F  K+F
Sbjct: 254 RQFTAATEVNALAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIDDLQIFRKKEF 310


>gi|86132661|ref|ZP_01051254.1| signal recognition particle-docking protein FtsY [Dokdonia
           donghaensis MED134]
 gi|85816903|gb|EAQ38088.1| signal recognition particle-docking protein FtsY [Dokdonia
           donghaensis MED134]
          Length = 317

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 186/297 (62%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T     + ++  ++ + ++DD V + LE++L+ SD+GV    K++  +  +R 
Sbjct: 16  LDKGLEKTKTSFFDKMSKAVAGKSKVDDDVLDNLEEVLVTSDVGVKTTLKVITRI-EERV 74

Query: 76  AKDVSV-----QRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           AKD  V      R+L + ++ L+ +     +  F     ++PHVI+VVGVNGVGKTT IG
Sbjct: 75  AKDKYVGTDELNRILREEIAGLLSETNTGNATEFEIPSQNKPHVIMVVGVNGVGKTTTIG 134

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV+L A DTFR+AAIDQL++WADR     V  ++GSD A++A++A +  
Sbjct: 135 KLAYQFKKQGKKVVLGAADTFRAAAIDQLQVWADRVDVPIVKQQMGSDPASVAFDALESG 194

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  DV+IIDTAGRLHN   LM  + K+ RV++++   APH VL VLD +TGQNA  Q 
Sbjct: 195 VKQDADVIIIDTAGRLHNKVNLMNELTKVKRVMQKVVGDAPHDVLLVLDGSTGQNAFEQA 254

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGI DL+ F   +F
Sbjct: 255 KQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKVEF 311


>gi|269940727|emb|CBI49108.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 416

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRFKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|208780176|ref|ZP_03247518.1| signal recognition particle-docking protein FtsY [Francisella
           novicida FTG]
 gi|208743825|gb|EDZ90127.1| signal recognition particle-docking protein FtsY [Francisella
           novicida FTG]
          Length = 331

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 124/302 (41%), Positives = 192/302 (63%), Gaps = 2/302 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ D+ + E++E  L+ +D+GV    +IV  L  K 
Sbjct: 30  RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIVAYLRDKV 89

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              ++     L  +  + + ++++P  KP   D    P VILVVGVNGVGKTT IGKL+K
Sbjct: 90  ARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTTIGKLTK 149

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+   G  V+LAAGDTFR+AA++QL+ W +R +   V    G+D+A++ Y+A   A++K 
Sbjct: 150 KLQSQGKSVILAAGDTFRAAAVEQLREWGNRNNTHVVYQHEGADSASVIYDAISSAKSKG 209

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG NAL Q E F+
Sbjct: 210 IDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALSQAEAFN 269

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F A+DF+  +   
Sbjct: 270 QIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFTTALFNS 329

Query: 314 LD 315
            D
Sbjct: 330 ND 331


>gi|315224167|ref|ZP_07866007.1| cell division protein FtsY [Capnocytophaga ochracea F0287]
 gi|314945900|gb|EFS97909.1| cell division protein FtsY [Capnocytophaga ochracea F0287]
          Length = 320

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 123/278 (44%), Positives = 179/278 (64%), Gaps = 7/278 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELI 92
           ++   ++D+ V ++LE++LI SD+GV    KI++ +   R AKD  ++   +   + E I
Sbjct: 37  LVGKSKVDEEVLDDLEEVLIASDVGVNTTLKIIDRI-EARVAKDKYLNTSELNTILREEI 95

Query: 93  HKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             +L         DF+     +P+V++VVGVNG GKTT IGKL+ + +  GLKV+L A D
Sbjct: 96  AGLLSETHTGEATDFTLPPDKKPYVMMVVGVNGAGKTTTIGKLASQFTKKGLKVVLGAAD 155

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+AAIDQL++WADRT    +  ++GSD A++AY+    A  +  DV+IIDTAGRLHN 
Sbjct: 156 TFRAAAIDQLQVWADRTGVPMIKQQLGSDPASVAYDTLSSAVKQNADVVIIDTAGRLHNK 215

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  + K+ RV++++ P APH VL VLD +TGQNA  Q + F      T L +TK+DG
Sbjct: 216 INLMNELSKIKRVMQKVIPDAPHEVLLVLDGSTGQNAFEQAKEFTKATEVTALAVTKLDG 275

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TA+GG +I I    +IPV ++GVGEGI+DL+ F   +F
Sbjct: 276 TAKGGVVIGISDQFQIPVKYIGVGEGIDDLQIFNKYEF 313


>gi|283770297|ref|ZP_06343189.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus H19]
 gi|283460444|gb|EFC07534.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus H19]
          Length = 416

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|257425289|ref|ZP_05601714.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427949|ref|ZP_05604347.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257430582|ref|ZP_05606964.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433343|ref|ZP_05609701.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436185|ref|ZP_05612232.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282914011|ref|ZP_06321798.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918933|ref|ZP_06326668.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924056|ref|ZP_06331732.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus C101]
 gi|293501043|ref|ZP_06666894.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293526591|ref|ZP_06671276.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           M1015]
 gi|257271746|gb|EEV03884.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274790|gb|EEV06277.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278710|gb|EEV09329.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281436|gb|EEV11573.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284467|gb|EEV14587.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314028|gb|EFB44420.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316743|gb|EFB47117.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322079|gb|EFB52403.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           M899]
 gi|290920663|gb|EFD97726.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096048|gb|EFE26309.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|312438387|gb|ADQ77458.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 416

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|167045714|gb|ABZ10361.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine bacterium HF4000_APKG2098]
          Length = 304

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 122/279 (43%), Positives = 179/279 (64%), Gaps = 1/279 (0%)

Query: 33  TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-KRYAKDVSVQRVLYDVSEL 91
            D+I  R++D  + +ELED LI+SD+GV  A+++ E+    K   K     ++    S  
Sbjct: 23  NDLIFKRKIDKNMLDELEDFLIQSDVGVESAKELREKFANIKINPKSSEKDKIFKIFSNY 82

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             ++L PL K       ++P VIL+ GVNGVGKTT IGKL K +     K++  A DTFR
Sbjct: 83  AAEILKPLEKNLENLNENKPSVILIAGVNGVGKTTTIGKLGKILGQNNKKIVFGAADTFR 142

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           +AA++QL++WA R +AD + SE G+D A++AY+A + A+    D L+IDTAGRL NN  L
Sbjct: 143 AAAVNQLEVWAKRINADIIKSEEGADPASVAYKALEHAKNNNFDYLLIDTAGRLQNNKNL 202

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M    K+ +V+K++D +APH    +LDATTGQ+A+ QVE F  +   TG+IMTK+DGTA+
Sbjct: 203 MDEFKKITKVVKKIDSNAPHETFLILDATTGQSAINQVEEFKKITPITGIIMTKLDGTAK 262

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           GG L+ I    K+P+  LG+GE  +DL+ F ++ FS  +
Sbjct: 263 GGILLAIGKKFKLPIVALGMGEKEDDLQKFNSEYFSNAL 301


>gi|21282847|ref|NP_645935.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486074|ref|YP_043295.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208121|ref|ZP_06924552.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300912201|ref|ZP_07129644.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|21204286|dbj|BAB94983.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244517|emb|CAG42946.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887364|gb|EFH26266.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300886447|gb|EFK81649.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 416

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|82750839|ref|YP_416580.1| signal recognition particle protein [Staphylococcus aureus RF122]
 gi|258423924|ref|ZP_05686809.1| signal recognition particle protein [Staphylococcus aureus A9635]
 gi|82656370|emb|CAI80788.1| signal recognition particle protein [Staphylococcus aureus RF122]
 gi|257845953|gb|EEV69982.1| signal recognition particle protein [Staphylococcus aureus A9635]
 gi|298694528|gb|ADI97750.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ED133]
 gi|302332839|gb|ADL23032.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 416

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|165922511|ref|ZP_02219682.1| signal recognition particle-docking protein FtsY [Coxiella burnetii
           RSA 334]
 gi|165916716|gb|EDR35320.1| signal recognition particle-docking protein FtsY [Coxiella burnetii
           RSA 334]
          Length = 324

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 193/310 (62%), Gaps = 4/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61
           N + +     W+ +L +    T  +L +G+++++  ++ +D  + EELE +L+ +DIG+ 
Sbjct: 14  NNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGIE 73

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             Q I+  L  +   K +S  + L D  ++ +  +L P  K  + + S  P VIL VGVN
Sbjct: 74  ATQSILNNLSQQVSRKSLSDPKALIDALKIELLNILEPCQK--HLEISASPFVILTVGVN 131

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT I KL+        +VMLAAGDTFR+AAI+QL+ W  R +A     + G+D+A+
Sbjct: 132 GVGKTTTIAKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVSAQQPGADSAS 191

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A + A A+  D+LI DTAGRLH  S LM  + K+ RV+K+++P APH  L VLDA 
Sbjct: 192 VIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDAG 251

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q E FH   G TG+ +TK+DGTA+GG +  I    ++P+ F+G+GE I DL+ 
Sbjct: 252 TGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLKS 311

Query: 301 FVAKDFSAVI 310
           F AK+F A +
Sbjct: 312 FNAKEFIAAL 321


>gi|262048133|ref|ZP_06021020.1| signal recognition particle [Staphylococcus aureus D30]
 gi|259163699|gb|EEW48254.1| signal recognition particle [Staphylococcus aureus D30]
          Length = 416

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|253731853|ref|ZP_04866018.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253733527|ref|ZP_04867692.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|253724405|gb|EES93134.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253728581|gb|EES97310.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus aureus
           subsp. aureus TCH130]
          Length = 416

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|329733588|gb|EGG69916.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 416

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|226199570|ref|ZP_03795127.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei Pakistan 9]
 gi|225928451|gb|EEH24481.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei Pakistan 9]
          Length = 476

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 131/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  L 
Sbjct: 181 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 236

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   + EL+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 237 EKVRAGRLTDPQQVKDALRELLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 295

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 296 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 354

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 355 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 414

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 415 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 474

Query: 311 TG 312
            G
Sbjct: 475 LG 476


>gi|289578456|ref|YP_003477083.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter italicus Ab9]
 gi|297544732|ref|YP_003677034.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528169|gb|ADD02521.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter italicus Ab9]
 gi|296842507|gb|ADH61023.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 319

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 134/314 (42%), Positives = 200/314 (63%), Gaps = 17/314 (5%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVA 63
           + A E   + +K+ +G   T   L   I  I++  R++D+ + EELE++LI +DIG++  
Sbjct: 13  ETAEEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGISTT 72

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILV 116
            KI+E +  K  AK++ +    YD S++       ++++L    KPF       P VIL+
Sbjct: 73  SKIIEGIRQK--AKEMKI----YDASQIKELLAEEVYEILQKDVKPFTL---TSPMVILI 123

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+      G KVMLAAGDTFR+AAIDQL+IWA+R +   +  + GS
Sbjct: 124 VGVNGVGKTTTIGKLAYMYKKEGKKVMLAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGS 183

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++ ++  + ++A+ +D+LI DTAGRLHN   LM  + K+ RV+ R  P A      V
Sbjct: 184 DPASVIFDGIQASKARGIDILICDTAGRLHNKKNLMEELRKIRRVIDREYPEARVETFLV 243

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL+Q ++F  V+  TG+++TK+DGTA+GG ++ I     +P+ ++G+GEGI 
Sbjct: 244 LDATTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGMGEGIE 303

Query: 297 DLEPFVAKDFSAVI 310
           DL+ F AK F + I
Sbjct: 304 DLQAFDAKSFVSAI 317


>gi|312888456|ref|ZP_07748030.1| signal recognition particle-docking protein FtsY [Mucilaginibacter
           paludis DSM 18603]
 gi|311299084|gb|EFQ76179.1| signal recognition particle-docking protein FtsY [Mucilaginibacter
           paludis DSM 18603]
          Length = 321

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 183/297 (61%), Gaps = 9/297 (3%)

Query: 17  LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73
           L  G   T       IT  ++ +  +DD V +ELE++L+ SD+GV    KI++ +  +  
Sbjct: 20  LDTGLEKTKENFFSKITKAVAGKTTVDDDVLDELEEILVTSDVGVTTTLKIIDRIQARVA 79

Query: 74  --RYAKDVSVQRVLYDVSELIHKMLMPLSKPF-NWDF-SHRPHVILVVGVNGVGKTTVIG 129
             +Y     +  +L D  E+   +    S  F N+++  H+P+VI+VVGVNGVGKTT IG
Sbjct: 80  RDKYLGTSELNNLLRD--EIQQLLAENNSNDFQNFEYGQHKPYVIMVVGVNGVGKTTTIG 137

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K+  AG +V+L A DTFR+AA+DQ+K+W +R     V   +GSD A++A++  K A
Sbjct: 138 KLAHKLKQAGNQVVLGAADTFRAAAVDQIKLWGERVGVRVVAQPMGSDPASVAFDTLKSA 197

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V+ ++ P APH +L VLDA+TGQNA+ Q 
Sbjct: 198 VANNDDVVIIDTAGRLHNKVNLMNELTKIKNVMLKVIPDAPHEILLVLDASTGQNAIEQC 257

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F        L +TK+DGTA+GG +I I    KIPV ++GVGE +NDL+ F  K F
Sbjct: 258 KQFTQATDVNALALTKLDGTAKGGVVIGISDQFKIPVKYIGVGEAMNDLQLFDRKGF 314


>gi|330685650|gb|EGG97291.1| signal recognition particle-docking protein FtsY [Staphylococcus
           epidermidis VCU121]
          Length = 414

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 186/299 (62%), Gaps = 12/299 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G     ++ EEL  + 
Sbjct: 86  KFKAGLEKSRENFQEQLNNLIARYRKVDEEFFEALEEMLITADVGFNTVMQLTEELRAEA 145

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             +++   +   D+ E+I + ++ +       S+  N +   R +VIL+VGVNGVGKTT 
Sbjct: 146 QRRNI---QETEDLREVIVEKIVEIYHQEDDKSEAMNLE-DGRLNVILMVGVNGVGKTTT 201

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G KVMLAAGDTFR+ AI+QLK+W +R   + +    GSD AA+ Y+A  
Sbjct: 202 IGKLAYRYKMEGKKVMLAAGDTFRAGAIEQLKVWGERVGVEVISQSEGSDPAAVMYDAIN 261

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K+VD+LI DTAGRL N S LM  + K+ RV+ R  P APH  L  LDATTGQNAL 
Sbjct: 262 AAKNKQVDILICDTAGRLQNKSNLMQELEKVKRVIGRAVPDAPHEALLCLDATTGQNALS 321

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q   F  V   +G+++TK+DGTA+GG ++ I    KIPV ++G+GE ++DL+PF  + +
Sbjct: 322 QARTFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELKIPVKYVGLGEKLDDLQPFNPESY 380


>gi|283470448|emb|CAQ49659.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 416

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 129/311 (41%), Positives = 187/311 (60%), Gaps = 9/311 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-SA 308
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + + + 
Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVNG 384

Query: 309 VITGCLDYGEE 319
           +    ++  EE
Sbjct: 385 LFADMIEQNEE 395


>gi|57651804|ref|YP_186110.1| cell division protein FtsY, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161637|ref|YP_493825.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88194942|ref|YP_499742.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|151221357|ref|YP_001332179.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|161509407|ref|YP_001575066.1| type I general secretory pathway protein signal recognition
           particle protein FtsY [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142025|ref|ZP_03566518.1| type I general secretory pathway protein signal recognition
           particle protein FtsY [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258452533|ref|ZP_05700539.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A5948]
 gi|262051864|ref|ZP_06024080.1| signal recognition particle [Staphylococcus aureus 930918-3]
 gi|282920018|ref|ZP_06327747.1| signal recognition particle receptor [Staphylococcus aureus A9765]
 gi|284024159|ref|ZP_06378557.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus 132]
 gi|294848229|ref|ZP_06788976.1| signal recognition particle receptor [Staphylococcus aureus A9754]
 gi|304381201|ref|ZP_07363854.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|57285990|gb|AAW38084.1| cell division protein FtsY, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127611|gb|ABD22125.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202500|gb|ABD30310.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|150374157|dbj|BAF67417.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|160368216|gb|ABX29187.1| Sec family Type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257859751|gb|EEV82593.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A5948]
 gi|259160265|gb|EEW45293.1| signal recognition particle [Staphylococcus aureus 930918-3]
 gi|282594734|gb|EFB99718.1| signal recognition particle receptor [Staphylococcus aureus A9765]
 gi|294825029|gb|EFG41451.1| signal recognition particle receptor [Staphylococcus aureus A9754]
 gi|302751058|gb|ADL65235.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340184|gb|EFM06125.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315198474|gb|EFU28803.1| Sec family Type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140949|gb|EFW32796.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320144336|gb|EFW36102.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329313904|gb|AEB88317.1| Signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329724745|gb|EGG61250.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 416

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|213963637|ref|ZP_03391889.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           sputigena Capno]
 gi|213953765|gb|EEB65095.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           sputigena Capno]
          Length = 320

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 124/278 (44%), Positives = 177/278 (63%), Gaps = 7/278 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELI 92
           ++   ++DD V ++LE++LI SD+GV    KI++ +   R AKD  +    +   + E I
Sbjct: 37  VMGKSKVDDEVLDDLEEVLIASDVGVNTTLKIIDRI-EARVAKDKYLGTSELNTILREEI 95

Query: 93  HKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             +L         DF      +P+V++VVGVNG GKTT IGKL+ + +  GLKV+L A D
Sbjct: 96  AGLLSETHTGEATDFVLPADKKPYVMMVVGVNGAGKTTTIGKLASQFTKKGLKVVLGAAD 155

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+AAIDQL++WADRT    +  ++GSD A++AY+    A  +  DV+IIDTAGRLHN 
Sbjct: 156 TFRAAAIDQLQVWADRTGVPMIKQQLGSDPASVAYDTLSSAVKQNADVVIIDTAGRLHNK 215

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  + K+ RV++++ P APH VL VLD +TGQNA  Q + F      T L +TK+DG
Sbjct: 216 INLMNELSKIKRVMQKVLPDAPHEVLLVLDGSTGQNAFEQAKEFTKATEVTSLAVTKLDG 275

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TA+GG +I I    +IPV ++GVGEGI+DL+ F   +F
Sbjct: 276 TAKGGVVIGISDQFQIPVKYIGVGEGIDDLQIFNKYEF 313


>gi|307728375|ref|YP_003905599.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           CCGE1003]
 gi|307582910|gb|ADN56308.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           CCGE1003]
          Length = 395

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 135/307 (43%), Positives = 185/307 (60%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G + TS  L    T I    ++D+ + EELE  L+ SD GV   + +
Sbjct: 94  ASAKRSWLTRLKTGLSKTSSSL----TGIFVGTKIDEDLYEELETALLMSDAGVDATEFL 149

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E L  K R  +    Q+V   +  L+  +L PL K      + +P V+++ GVNG GKT
Sbjct: 150 LEALREKVRTERLTEPQQVKAALRALLVDLLKPLEKSLMLGRA-KPLVMMIAGVNGAGKT 208

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A
Sbjct: 209 TSIGKLAKHLQSFNQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVAQESG-DPAAVIFDA 267

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 268 VGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNA 327

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++
Sbjct: 328 LAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGERVEDLQPFSAEE 387

Query: 306 FSAVITG 312
           FS  + G
Sbjct: 388 FSDALLG 394


>gi|332292573|ref|YP_004431182.1| signal recognition particle-docking protein FtsY [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170659|gb|AEE19914.1| signal recognition particle-docking protein FtsY [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 317

 Score =  228 bits (582), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 125/296 (42%), Positives = 188/296 (63%), Gaps = 6/296 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIV---EELLT 72
           L KG   T     + ++  ++ + ++DD V + LE++L+ SD+GV    K++   EE ++
Sbjct: 16  LDKGLEKTKTSFFDKMSKAVAGKSKVDDDVLDNLEEVLVTSDVGVKTTLKVITRIEERVS 75

Query: 73  K-RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           + +Y     + ++L + ++ L+ +  +  +  F      +PHVI+VVGVNGVGKTT IGK
Sbjct: 76  RDKYVGTDELNQILREEIAGLLSETNVGNATEFEIPKGTKPHVIMVVGVNGVGKTTTIGK 135

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    GLKV+L A DTFR+AAIDQL++WADR     V  ++GSD A++A++A +   
Sbjct: 136 LAYQFKKQGLKVVLGAADTFRAAAIDQLQVWADRVDVPIVKQQMGSDPASVAFDALESGV 195

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+IIDTAGRLHN   LM  + K+ RV++++   APH VL VLD +TGQNA  Q +
Sbjct: 196 NQNADVIIIDTAGRLHNKVNLMNELTKVKRVMQKVVGDAPHDVLLVLDGSTGQNAFEQAK 255

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGI DL+ F   +F
Sbjct: 256 QFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKVEF 311


>gi|167892738|ref|ZP_02480140.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 7894]
          Length = 354

 Score =  228 bits (582), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ L 
Sbjct: 59  SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 114

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 115 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 173

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 174 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 232

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 233 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 292

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 293 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 352

Query: 311 TG 312
            G
Sbjct: 353 LG 354


>gi|15924225|ref|NP_371759.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926818|ref|NP_374351.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267726|ref|YP_001246669.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393784|ref|YP_001316459.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus JH1]
 gi|156979556|ref|YP_001441815.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315593|ref|ZP_04838806.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006022|ref|ZP_05144623.2| signal recognition particle [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795709|ref|ZP_05644688.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9781]
 gi|258415933|ref|ZP_05682203.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9763]
 gi|258419680|ref|ZP_05682647.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9719]
 gi|258434851|ref|ZP_05688925.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9299]
 gi|258444573|ref|ZP_05692902.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A8115]
 gi|258447594|ref|ZP_05695738.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A6300]
 gi|258454815|ref|ZP_05702779.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A5937]
 gi|269202851|ref|YP_003282120.1| cell division protein FtsY, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892722|ref|ZP_06300957.1| signal recognition particle receptor [Staphylococcus aureus A8117]
 gi|282927576|ref|ZP_06335192.1| signal recognition particle receptor [Staphylococcus aureus A10102]
 gi|295407174|ref|ZP_06816975.1| signal recognition particle receptor [Staphylococcus aureus A8819]
 gi|296274792|ref|ZP_06857299.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297245939|ref|ZP_06929798.1| signal recognition particle receptor [Staphylococcus aureus A8796]
 gi|13701035|dbj|BAB42330.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247005|dbj|BAB57397.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147740795|gb|ABQ49093.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946236|gb|ABR52172.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus JH1]
 gi|156721691|dbj|BAF78108.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257789681|gb|EEV28021.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9781]
 gi|257839269|gb|EEV63743.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9763]
 gi|257844265|gb|EEV68647.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9719]
 gi|257849212|gb|EEV73194.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9299]
 gi|257850066|gb|EEV74019.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A8115]
 gi|257853785|gb|EEV76744.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A6300]
 gi|257863198|gb|EEV85962.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A5937]
 gi|262075141|gb|ACY11114.1| cell division protein FtsY, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282590579|gb|EFB95656.1| signal recognition particle receptor [Staphylococcus aureus A10102]
 gi|282764719|gb|EFC04844.1| signal recognition particle receptor [Staphylococcus aureus A8117]
 gi|285816917|gb|ADC37404.1| Signal recognition particle receptor protein FtsY (=alpha subunit)
           [Staphylococcus aureus 04-02981]
 gi|294968027|gb|EFG44055.1| signal recognition particle receptor [Staphylococcus aureus A8819]
 gi|297177103|gb|EFH36357.1| signal recognition particle receptor [Staphylococcus aureus A8796]
 gi|312829629|emb|CBX34471.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315131028|gb|EFT87012.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727415|gb|EGG63871.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 416

 Score =  228 bits (582), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNIE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|303235657|ref|ZP_07322264.1| signal recognition particle-docking protein FtsY [Prevotella
           disiens FB035-09AN]
 gi|302484104|gb|EFL47092.1| signal recognition particle-docking protein FtsY [Prevotella
           disiens FB035-09AN]
          Length = 318

 Score =  228 bits (582), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 185/297 (62%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG  +T   +   I   ++ + ++DD V + LE++LI SD+GV    KI+E +  +R 
Sbjct: 15  LDKGLETTKQSVFSKIARAVAGKSKVDDEVLDNLEEILITSDVGVDTTVKIIERI-EERI 73

Query: 76  AKDVSVQRV-LYDVSELIHKMLMPLSKPFN---WDF--SHRPHVILVVGVNGVGKTTVIG 129
           A+D  V    L DV       L+  +   N   WD    H+P+VIL+VGVNGVGKTT IG
Sbjct: 74  ARDKYVSTSELNDVLRAEIANLLTENNTENAEDWDLPTDHKPYVILIVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KV L A DTFR+AA++Q++IW DR     +  ++GSD A++A++  + A
Sbjct: 134 KLAYQFKKAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVIKQQMGSDPASVAFDTLQSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP  V+ VLD +TGQNA  Q 
Sbjct: 194 KANGADVVIIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPDDVMLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F +V   T L +TK+DGTA+GG +I I    K+PV ++G+GEGI DL+ F  + F
Sbjct: 254 KQFASVTQITSLAITKLDGTAKGGVVIGISDQLKVPVRYIGLGEGIEDLQLFNKEQF 310


>gi|261379617|ref|ZP_05984190.1| signal recognition particle-docking protein FtsY [Neisseria
           subflava NJ9703]
 gi|284798099|gb|EFC53446.1| signal recognition particle-docking protein FtsY [Neisseria
           subflava NJ9703]
          Length = 510

 Score =  228 bits (582), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 126/303 (41%), Positives = 185/303 (61%), Gaps = 14/303 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+        E 
Sbjct: 209 LSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEAT-----EY 263

Query: 71  LTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           L K     VS+ + L D +EL       ++ ++ PL KP     +  P VI++ G+NG G
Sbjct: 264 LMKDVRDRVSL-KGLKDGNELRGALKDALYDLIKPLEKPLVLPETREPFVIMLAGINGAG 322

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ +
Sbjct: 323 KTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCF 381

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQ
Sbjct: 382 DAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQ 441

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A
Sbjct: 442 NAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFNA 501

Query: 304 KDF 306
           K F
Sbjct: 502 KAF 504


>gi|323441010|gb|EGA98717.1| signal recognition particle protein [Staphylococcus aureus O11]
 gi|323442327|gb|EGA99957.1| signal recognition particle protein [Staphylococcus aureus O46]
          Length = 416

 Score =  228 bits (582), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNIE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|241760701|ref|ZP_04758793.1| cell division protein FtsY [Neisseria flavescens SK114]
 gi|241318882|gb|EER55408.1| cell division protein FtsY [Neisseria flavescens SK114]
          Length = 510

 Score =  228 bits (582), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 127/308 (41%), Positives = 186/308 (60%), Gaps = 14/308 (4%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V    LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+     
Sbjct: 204 VEEHKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEAT-- 261

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVG 118
              E L K     VS+ + L D +EL       ++ ++ PL KP     +  P VI++ G
Sbjct: 262 ---EYLMKDVRDRVSL-KGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAG 317

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           +NG GKTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+
Sbjct: 318 INGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDS 376

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLD
Sbjct: 377 AAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLD 436

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQNA+ QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL
Sbjct: 437 ANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDL 496

Query: 299 EPFVAKDF 306
            PF AK F
Sbjct: 497 RPFNAKAF 504


>gi|239636286|ref|ZP_04677288.1| cell division protein FtsY [Staphylococcus warneri L37603]
 gi|239597641|gb|EEQ80136.1| cell division protein FtsY [Staphylococcus warneri L37603]
          Length = 414

 Score =  228 bits (582), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 186/299 (62%), Gaps = 12/299 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G     ++ EEL  + 
Sbjct: 86  KFKAGLEKSRENFQEQLNNLIARYRKVDEEFFEALEEMLITADVGFNTVMQLTEELRAEA 145

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             +++   +   D+ E+I + ++ +       S+  N +   R +VIL+VGVNGVGKTT 
Sbjct: 146 QRRNI---QETEDLREVIVEKIVEIYHQEDDKSEAMNLE-DGRLNVILMVGVNGVGKTTT 201

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G KVMLAAGDTFR+ AI+QLK+W +R   + +    GSD AA+ Y+A  
Sbjct: 202 IGKLAYRYKMEGKKVMLAAGDTFRAGAIEQLKVWGERVGVEVISQSEGSDPAAVMYDAIN 261

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K+VD+LI DTAGRL N S LM  + K+ RV+ R  P APH  L  LDATTGQNAL 
Sbjct: 262 AAKNKQVDILICDTAGRLQNKSNLMQELEKVKRVIGRAVPDAPHEALLCLDATTGQNALS 321

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q   F  V   +G+++TK+DGTA+GG ++ I    KIPV ++G+GE ++DL+PF  + +
Sbjct: 322 QARTFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELKIPVKYVGLGEKLDDLQPFNPESY 380


>gi|167901234|ref|ZP_02488439.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei NCTC 13177]
          Length = 339

 Score =  228 bits (581), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ L 
Sbjct: 44  SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 99

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 100 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 158

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 159 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 217

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 218 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 277

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 278 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 337

Query: 311 TG 312
            G
Sbjct: 338 LG 339


>gi|56476189|ref|YP_157778.1| cell division protein FtsY [Aromatoleum aromaticum EbN1]
 gi|56312232|emb|CAI06877.1| Cell division protein FtsY [Aromatoleum aromaticum EbN1]
          Length = 386

 Score =  228 bits (581), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 128/300 (42%), Positives = 189/300 (63%), Gaps = 11/300 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  +L  G + T  +L  G+  +   R++D+ + EELE  L+ +D GV   Q ++ EL 
Sbjct: 79  SWSERLKAGLSRTRQQLGGGLASLFGRRKIDEELLEELEATLLMADCGVEATQHLLGEL- 137

Query: 72  TKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            KR+ +D       +Q+ L D    +H +L+PL +P +    H P++I++ GVNG GKTT
Sbjct: 138 RKRWKRDRLETADQLQKALADE---LHAILLPLEEPLDVS-GHSPYIIMIAGVNGSGKTT 193

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K     G  V+LAAGDTFR+AA +QL  W +R +   +  + G D+AA+ ++A 
Sbjct: 194 SIGKLAKYFQAQGRSVLLAAGDTFRAAAREQLMTWGERNNVTVIAQD-GGDSAAVIFDAI 252

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+++DV++ DTAGRL     LM  I K+ RV+ +  P  PH VL VLDA  GQNAL
Sbjct: 253 NAAKARRIDVVLADTAGRLPTQLHLMDEIAKVKRVIAKASPSGPHEVLLVLDANIGQNAL 312

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QV+ F +  G TGL++TK+DGTA+GG +  I   +  P+ F+GVGEGI+DL+PF A++F
Sbjct: 313 AQVKAFDSAIGVTGLVVTKLDGTAKGGVVAAIARQYPRPLRFIGVGEGIDDLQPFKAREF 372


>gi|187922585|ref|YP_001894227.1| signal recognition particle-docking protein FtsY [Burkholderia
           phytofirmans PsJN]
 gi|187713779|gb|ACD15003.1| signal recognition particle-docking protein FtsY [Burkholderia
           phytofirmans PsJN]
          Length = 386

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 134/302 (44%), Positives = 183/302 (60%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L  G + TS  L    T I    ++D+ + EELE  L+ SD GV   + ++E L 
Sbjct: 90  SWLTRLKTGLSKTSSNL----TGIFVGTKIDEDLYEELETALLMSDAGVDATEFLLEALR 145

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  + V  Q+V   +  L+  +L PL K      +  P V+++ GVNG GKTT IGK
Sbjct: 146 EKVRAERLVDPQQVKTALRTLLVDLLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 204

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A   A+
Sbjct: 205 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVSQESG-DPAAVIFDAVGAAR 263

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 264 ARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALAQVK 323

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++FS  +
Sbjct: 324 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDAL 383

Query: 311 TG 312
            G
Sbjct: 384 LG 385


>gi|169827096|ref|YP_001697254.1| cell division protein ftsY-like protein [Lysinibacillus sphaericus
           C3-41]
 gi|168991584|gb|ACA39124.1| Cell division protein ftsY-like protein [Lysinibacillus sphaericus
           C3-41]
          Length = 448

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 125/304 (41%), Positives = 187/304 (61%), Gaps = 13/304 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S  +K   G   T       + D+++  R++D+   EELEDLL+++D+G     +++++L
Sbjct: 131 SITQKFKAGLEKTRNSFTSKVNDLVARYRKVDEDFFEELEDLLLQADVGFETVMELMDKL 190

Query: 71  ---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              + ++  KD +     +   L ++ E   + L+ L+   + + +    VIL VGVNGV
Sbjct: 191 RFEVQRKNIKDTNGIQTLISEKLVEIYEQGEEDLIELNMQPDGELT----VILFVGVNGV 246

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ ++   G  V+LAAGDTFR+ AIDQL++W DR   + +    GSD AA+ 
Sbjct: 247 GKTTTIGKLAHRLKSQGKTVVLAAGDTFRAGAIDQLQVWGDRVGCEVIKQSEGSDPAAVM 306

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+ +K DVLI DTAGRL N   LM  + K+ RV+ R  P APH VL  LDATTG
Sbjct: 307 YDAIRAAKNRKADVLICDTAGRLQNKVNLMNELEKVHRVISREIPSAPHEVLLALDATTG 366

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL+PF 
Sbjct: 367 QNALVQAQTFKEATNVTGIVLTKLDGTAKGGIVLAIRNKLHIPVKFVGLGEKMDDLQPFD 426

Query: 303 AKDF 306
           A+ +
Sbjct: 427 AERY 430


>gi|296124401|ref|YP_003632179.1| signal recognition particle-docking protein FtsY [Planctomyces
           limnophilus DSM 3776]
 gi|296016741|gb|ADG69980.1| signal recognition particle-docking protein FtsY [Planctomyces
           limnophilus DSM 3776]
          Length = 313

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 133/312 (42%), Positives = 181/312 (58%), Gaps = 14/312 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL  G   TS  L+  I D+  S   L +   E+ E  LI++D+GVA   +IV +
Sbjct: 1   MGFFDKLKAGLKKTSQLLRTDIRDLFKSGEILSEKHLEQFEARLIQTDMGVAATTRIVSD 60

Query: 70  LLTKRYAKDV-----------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           L  +   + +           +V+ +L   S   +    PLS P N+  S RP VILV G
Sbjct: 61  LRQEHLGRTMKVDELWATVRATVKSILKGTSTTTYDPEQPLS-PLNFSES-RPTVILVAG 118

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT I KL++ ++  G  V+LAAGDTFR+AA++QL +W+ R   D V    G+D 
Sbjct: 119 VNGTGKTTTIAKLARLLTSQGKTVLLAAGDTFRAAAVEQLTLWSQRLGCDIVTKPAGTDP 178

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+A+   + A    VDVLIIDTAGRLHN   LM  + K+ RV+ +  P APH  L V+D
Sbjct: 179 AAVAFAGCEAAVKAGVDVLIIDTAGRLHNQQNLMQELEKIRRVIAKQIPDAPHESLLVID 238

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q + F     TTGLI++K+DGTARGG  + I     IPV ++GVGE I+DL
Sbjct: 239 ATTGQNGLNQAQAFSKAVSTTGLILSKLDGTARGGVAVAIRQQMGIPVKYVGVGEAIDDL 298

Query: 299 EPFVAKDFSAVI 310
           E F    F+  +
Sbjct: 299 EVFDPDQFAEAL 310


>gi|167617829|ref|ZP_02386460.1| signal recognition particle-docking protein FtsY [Burkholderia
           thailandensis Bt4]
          Length = 328

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/302 (43%), Positives = 184/302 (60%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD GV   + ++  L 
Sbjct: 33  SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGVDATEHLLGALR 88

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      +  P V+++ GVNG GKTT IGK
Sbjct: 89  EKVRTGRLTDPQQVKDALRGLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSIGK 147

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 148 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 206

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 207 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 266

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++F+  +
Sbjct: 267 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFADAL 326

Query: 311 TG 312
            G
Sbjct: 327 LG 328


>gi|161523672|ref|YP_001578684.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans ATCC 17616]
 gi|189351559|ref|YP_001947187.1| signal recognition particle receptor [Burkholderia multivorans ATCC
           17616]
 gi|160341101|gb|ABX14187.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans ATCC 17616]
 gi|189335581|dbj|BAG44651.1| signal recognition particle receptor [Burkholderia multivorans ATCC
           17616]
          Length = 380

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/307 (42%), Positives = 186/307 (60%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++DD + EELE  L+ SD GV   + +
Sbjct: 80  ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDDALYEELETALLMSDAGVDATEYL 135

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +  L  K R  +    Q+V   + +L+ ++L PL K      +  P V+++ GVNG GKT
Sbjct: 136 LGALREKVRVGRLTDPQQVKSALRDLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKT 194

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ ++A
Sbjct: 195 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLTVWGERNNVTVVQQESG-DPAAVIFDA 253

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 254 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 313

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++
Sbjct: 314 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEE 373

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 374 FADALLG 380


>gi|167844229|ref|ZP_02469737.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei B7210]
          Length = 345

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ L 
Sbjct: 50  SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 105

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 106 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 164

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 165 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 223

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 224 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 283

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 284 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 343

Query: 311 TG 312
            G
Sbjct: 344 LG 345


>gi|91781706|ref|YP_556912.1| signal recognition particle-docking protein FtsY [Burkholderia
           xenovorans LB400]
 gi|91685660|gb|ABE28860.1| signal recognition particle-docking protein FtsY [Burkholderia
           xenovorans LB400]
          Length = 385

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/303 (43%), Positives = 182/303 (60%), Gaps = 7/303 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L  G + TS  L    T I    ++D+ + EELE  L+ SD GV   + ++E L 
Sbjct: 89  SWLTRLKTGLSKTSSSL----TGIFVGTKIDEDLYEELETALLMSDAGVDATEYLLEALR 144

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+  +L PL K      +  P V+++ GVNG GKTT IGK
Sbjct: 145 EKVRTERLTDPQQVKAALRTLLVDLLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 203

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A   A+
Sbjct: 204 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVSQESG-DPAAVIFDAVGAAR 262

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 263 ARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQEGAPHEVLLVIDANTGQNALAQVK 322

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++FS  +
Sbjct: 323 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDAL 382

Query: 311 TGC 313
            G 
Sbjct: 383 LGS 385


>gi|295675394|ref|YP_003603918.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           CCGE1002]
 gi|295435237|gb|ADG14407.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           CCGE1002]
          Length = 384

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/302 (43%), Positives = 183/302 (60%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L  G A TS  L    T I    ++D+ + EELE  L+ SD GV   + ++E L 
Sbjct: 88  SWLTRLKSGLAKTSSNL----TGIFVGTKIDEDLYEELETALLMSDAGVEATEFLLESLR 143

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      +  P V+++ GVNG GKTT IGK
Sbjct: 144 EKVRSERLTDPQQVKTALRTLLVELLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 202

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL +W  R +   V  E G D AA+ ++A   A+
Sbjct: 203 LAKHLQSFHQSVLLAAGDTFRAAAREQLAVWGQRNNVTVVAQESG-DPAAVIFDAVGAAR 261

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 262 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALTQVK 321

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE ++DL+PF A++FS  +
Sbjct: 322 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVDDLQPFSAEEFSDAL 381

Query: 311 TG 312
            G
Sbjct: 382 LG 383


>gi|170691511|ref|ZP_02882676.1| signal recognition particle-docking protein FtsY [Burkholderia
           graminis C4D1M]
 gi|170143716|gb|EDT11879.1| signal recognition particle-docking protein FtsY [Burkholderia
           graminis C4D1M]
          Length = 395

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/302 (44%), Positives = 183/302 (60%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L  G + TS      IT I    ++D+ + EELE  L+ SD GV   + ++E L 
Sbjct: 99  SWLTRLKTGLSKTS----SSITGIFVGAKIDEDLYEELETALLMSDAGVDATEFLLEALR 154

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+  +L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 155 EKVRAERLTEPQQVKAALRTLLVDLLKPLEKSLMLGRA-KPLVMMIAGVNGAGKTTSIGK 213

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A   A+
Sbjct: 214 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVAQESG-DPAAVIFDAVGAAR 272

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 273 ARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALAQVK 332

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++FS  +
Sbjct: 333 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDAL 392

Query: 311 TG 312
            G
Sbjct: 393 LG 394


>gi|221211185|ref|ZP_03584164.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans CGD1]
 gi|221168546|gb|EEE01014.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans CGD1]
          Length = 380

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/307 (42%), Positives = 186/307 (60%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++DD + EELE  L+ SD GV   + +
Sbjct: 80  ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDDALYEELETALLMSDAGVDATEYL 135

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +  L  K R  +    Q+V   + +L+ ++L PL K      +  P V+++ GVNG GKT
Sbjct: 136 LGALREKVRVGRLTDPQQVKSALRDLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKT 194

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ ++A
Sbjct: 195 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLTVWGERNNVTVVQQESG-DPAAVIFDA 253

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 254 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 313

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++
Sbjct: 314 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEE 373

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 374 FADALLG 380


>gi|167579753|ref|ZP_02372627.1| signal recognition particle-docking protein FtsY [Burkholderia
           thailandensis TXDOH]
          Length = 425

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/302 (43%), Positives = 184/302 (60%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD GV   + ++  L 
Sbjct: 130 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGVDATEHLLGALR 185

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      +  P V+++ GVNG GKTT IGK
Sbjct: 186 EKVRTGRLTDPQQVKDALRGLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSIGK 244

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 245 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 303

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 304 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 363

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++F+  +
Sbjct: 364 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFADAL 423

Query: 311 TG 312
            G
Sbjct: 424 LG 425


>gi|254515831|ref|ZP_05127891.1| signal recognition particle-docking protein FtsY [gamma
           proteobacterium NOR5-3]
 gi|219675553|gb|EED31919.1| signal recognition particle-docking protein FtsY [gamma
           proteobacterium NOR5-3]
          Length = 352

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/309 (42%), Positives = 192/309 (62%), Gaps = 5/309 (1%)

Query: 2   SNQKVASESLS--WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDI 58
           SNQ    E+    +  +L +G   TS  L  G+ ++   R+ +D  + EELE  L+ +D+
Sbjct: 37  SNQDSDPEAAGPGFFGRLKRGLGRTSDSLAAGVGNLFLGRKTIDADLLEELETQLLMADV 96

Query: 59  GVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           G+    +I+  L  +   K++S  + ++  + + +  +L P  K  +   +  P VIL+V
Sbjct: 97  GIEATSEIIAHLTDRVSRKELSDPEALMQGLRDELQGILQPCEKSLDVS-AGSPFVILMV 155

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+++  D G  VMLAAGDTFR+AA++QL+ W +R     +    G+D
Sbjct: 156 GVNGVGKTTTIGKLARRFQDEGRSVMLAAGDTFRAAAVEQLQHWGERHDVPVIAQHTGAD 215

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           +A++ Y+A + A A+ VDVLI DTAGRL N S LM  + K++RV+++L+P AP  V+ VL
Sbjct: 216 SASVIYDALQAATARGVDVLIADTAGRLSNKSHLMEELSKVVRVMRKLNPDAPQEVMLVL 275

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQNAL Q   F    G TGL +TK+DGTA+GG +  I     +P+ F+GVGE   D
Sbjct: 276 DAGTGQNALSQASQFLEAVGVTGLTLTKLDGTAKGGVIFAIARRLGLPIRFIGVGESALD 335

Query: 298 LEPFVAKDF 306
           L PFVA++F
Sbjct: 336 LRPFVAEEF 344


>gi|282910807|ref|ZP_06318610.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282325412|gb|EFB55721.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus WBG10049]
          Length = 416

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 126/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNLE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD+TTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDSTTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 RNFKGVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|282916485|ref|ZP_06324247.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus D139]
 gi|282319925|gb|EFB50273.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus D139]
          Length = 416

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 184/299 (61%), Gaps = 12/299 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL  + 
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEEL--RM 144

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            A+  ++Q    D+ E+I + ++ +       S+  N +   R +VIL+VGVNGVGKTT 
Sbjct: 145 EAQRHNIQDT-EDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVGVNGVGKTTT 202

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A  
Sbjct: 203 IGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAIN 262

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LDATTGQNAL 
Sbjct: 263 AAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALS 322

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 323 QARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|254796903|ref|YP_003081740.1| signal recognition particle-docking protein FtsY [Neorickettsia
           risticii str. Illinois]
 gi|254590139|gb|ACT69501.1| signal recognition particle-docking protein FtsY [Neorickettsia
           risticii str. Illinois]
          Length = 309

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 123/280 (43%), Positives = 177/280 (63%), Gaps = 2/280 (0%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  GI +I +  ++ +   E+LE+LL+ +DIG  V ++IV+ +   +     S+++V   
Sbjct: 20  LSSGIDNIFAKEKISESTIEQLEELLLSADIGPTVTERIVKAVKKIKVKDGESLEQVKSI 79

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             E I K+L P SK   +  +  P VI+  GVNG GKTT IGKL+ K       VM+AA 
Sbjct: 80  TREQIRKVLDPTSKKLIFPQTG-PQVIVFCGVNGNGKTTTIGKLAYKFIQENKTVMIAAC 138

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D FR+AAI+QL+ WA+R SA F  SE   +A+  AY+A ++A   KVD LIIDT+GRLH 
Sbjct: 139 DLFRAAAIEQLRFWAERVSATFFSSETSKNASGTAYKALEKALEDKVDALIIDTSGRLHT 198

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + K+ RVL +L P APH V+  LDA+TGQNAL QV++F      TGL++TK+D
Sbjct: 199 QNDLMEELKKICRVLSKLMPSAPHEVILALDASTGQNALNQVQVFKDAVNLTGLVVTKLD 258

Query: 268 GTARGGGLIPIVVTH-KIPVYFLGVGEGINDLEPFVAKDF 306
           GT++GG ++ I   +  + +YF+G GE I DLE F + +F
Sbjct: 259 GTSKGGVIVAIAERYPNLGIYFVGTGEKITDLEEFSSSEF 298


>gi|221199977|ref|ZP_03573020.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans CGD2M]
 gi|221206868|ref|ZP_03579880.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans CGD2]
 gi|221173523|gb|EEE05958.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans CGD2]
 gi|221180216|gb|EEE12620.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans CGD2M]
          Length = 382

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/307 (42%), Positives = 186/307 (60%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++DD + EELE  L+ SD GV   + +
Sbjct: 82  ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDDALYEELETALLMSDAGVDATEYL 137

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +  L  K R  +    Q+V   + +L+ ++L PL K      +  P V+++ GVNG GKT
Sbjct: 138 LGALREKVRVGRLTDPQQVKSALRDLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKT 196

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ ++A
Sbjct: 197 TSIGKLAKHLQSFEQSVLLAAGDTFRAAAREQLTVWGERNNVTVVQQESG-DPAAVIFDA 255

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 256 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 315

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++
Sbjct: 316 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEE 375

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 376 FADALLG 382


>gi|209519635|ref|ZP_03268425.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           H160]
 gi|209499921|gb|EDZ99986.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           H160]
          Length = 375

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/302 (43%), Positives = 183/302 (60%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L  G + TS  L    T I    ++D+ + EELE  L+ SD GV   + ++E L 
Sbjct: 79  SWLTRLKSGLSKTSSSL----TGIFVGTKIDEDLYEELETALLMSDAGVEATEFLLESLR 134

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      +  P V+++ GVNG GKTT IGK
Sbjct: 135 EKVRSDRLTDPQQVKTALRTLLVELLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 193

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL +W  R +   V  E G D AA+ ++A   A+
Sbjct: 194 LAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGQRNNVTVVAQESG-DPAAVIFDAVGAAR 252

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 253 ARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALTQVK 312

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++FS  +
Sbjct: 313 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDAL 372

Query: 311 TG 312
            G
Sbjct: 373 LG 374


>gi|242318106|ref|ZP_04817122.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1106b]
 gi|242141345|gb|EES27747.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1106b]
          Length = 384

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ L 
Sbjct: 89  SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 144

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 145 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 203

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 204 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 262

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 263 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 322

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 323 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 382

Query: 311 TG 312
            G
Sbjct: 383 LG 384


>gi|227510450|ref|ZP_03940499.1| signal recognition particle-docking protein FtsY [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227190102|gb|EEI70169.1| signal recognition particle-docking protein FtsY [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 483

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/316 (41%), Positives = 189/316 (59%), Gaps = 20/316 (6%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           + + ASES    +   KG A +     + +  ++++ R +D+   ++LED+LI SD+G  
Sbjct: 165 DSEAASES-GATQSYEKGLAKSRSSFGQKLNALLANFRHVDESFFDDLEDMLIESDVGFE 223

Query: 62  VAQKIV----EELLTKRYAKDVSVQRV-------LYDVSELIHKMLMPLSKPFNWDFSHR 110
            + KI     EE+  +   K   VQ V       +YD +       + L+K         
Sbjct: 224 TSMKIADDLREEVKLQNAKKPKDVQNVIVKKLIDMYDQAGNGENPAINLAK-------SG 276

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VIL+VGVNGVGKTT IGK++K   D G KV+LAA DTFR+ AI+QL +WA R   D V
Sbjct: 277 PTVILMVGVNGVGKTTTIGKMAKMYKDQGKKVVLAAADTFRAGAIEQLNVWAQRDGVDIV 336

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S+  SD +++ ++A K+A+ +  D+L++DTAGRL N   LM  + KM ++L R  P AP
Sbjct: 337 KSKPKSDPSSVVFDAVKKARDEHYDILMVDTAGRLQNKVNLMNELSKMKKILTREIPEAP 396

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H VL VLDATTGQNA+ Q +MF      TG+++TK+DGTARGG ++ I     +PV ++G
Sbjct: 397 HEVLLVLDATTGQNAMTQAKMFKEATDVTGIVLTKLDGTARGGIVLAIRSELHLPVKYVG 456

Query: 291 VGEGINDLEPFVAKDF 306
           +GE + DL+PF   DF
Sbjct: 457 LGEKVTDLKPFDPNDF 472


>gi|302039359|ref|YP_003799681.1| cell division protein ftsY-like protein [Candidatus Nitrospira
           defluvii]
 gi|300607423|emb|CBK43756.1| Cell division protein ftsY homolog [Candidatus Nitrospira defluvii]
          Length = 304

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/300 (42%), Positives = 182/300 (60%), Gaps = 5/300 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + W++KL+ G + T   +  G  D +  R  D  + +ELE  LI +D+G+ V ++++ +L
Sbjct: 1   MGWLQKLSAGLSKTRDAVT-GQLDRLLGRAADPALLDELEVALISADLGMPVVERVMGQL 59

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTT 126
             +    + S    + D+  + +  +L+P              RP VIL VGVNGVGKTT
Sbjct: 60  RAQMRGGNFSSADKVRDLLRQSVLDILLPTQSASMEQLVAQGPRPFVILAVGVNGVGKTT 119

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            + KL+++    G K +L AGDTFR+AAIDQL++WADR   D +    G+D AA+AY+  
Sbjct: 120 TVAKLTQRFRQQGKKPLLVAGDTFRAAAIDQLQVWADRIEVDVIRHRPGADPAAVAYDGM 179

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+  DV++IDTAGRLH  + LM  + K+ RV+ +    APH VL VLDAT GQNA+
Sbjct: 180 TAAKARGSDVVLIDTAGRLHTKTNLMDELRKIKRVVAQECQGAPHEVLLVLDATVGQNAI 239

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   FH   G TG+ +TK+DGTARGG ++ I  T KIPV  +GVGE + DL+ F AK F
Sbjct: 240 AQARQFHEAVGVTGIALTKLDGTARGGIVVAIADTFKIPVRLIGVGEDVEDLQDFDAKAF 299


>gi|126654293|ref|ZP_01726070.1| recognition particle-docking protein [Bacillus sp. B14905]
 gi|126589257|gb|EAZ83418.1| recognition particle-docking protein [Bacillus sp. B14905]
          Length = 424

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 125/304 (41%), Positives = 187/304 (61%), Gaps = 13/304 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S  +K   G   T       + D+++  R++D+   EELEDLL+++D+G     +++++L
Sbjct: 107 SITQKFKAGLEKTRNSFTSKVNDLVARYRKVDEDFFEELEDLLLQADVGFETVMELMDKL 166

Query: 71  ---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              + ++  KD +     +   L ++ E     L+ L+   + + +    VIL VGVNGV
Sbjct: 167 RFEVQRKNIKDTNGIQTLISEKLVEIYEQGEDDLIELNMQPDGELT----VILFVGVNGV 222

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++++   G  V+LAAGDTFR+ AIDQL++W DR   + +    GSD AA+ 
Sbjct: 223 GKTTTIGKLARRLKSQGKTVVLAAGDTFRAGAIDQLQVWGDRVGCEVIKQSEGSDPAAVM 282

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+ +K DVLI DTAGRL N   LM  + K+ RV+ R  P APH VL  LDATTG
Sbjct: 283 YDAIRAAKNRKADVLICDTAGRLQNKVNLMNELEKVHRVISREIPSAPHEVLLALDATTG 342

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL+PF 
Sbjct: 343 QNALVQAQTFKEATNVTGIVLTKLDGTAKGGIVLAIRNKLHIPVKFVGLGEKMDDLQPFD 402

Query: 303 AKDF 306
           A+ +
Sbjct: 403 AERY 406


>gi|78222392|ref|YP_384139.1| signal recognition particle-docking protein FtsY [Geobacter
           metallireducens GS-15]
 gi|78193647|gb|ABB31414.1| signal recognition particle-docking protein FtsY [Geobacter
           metallireducens GS-15]
          Length = 351

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/276 (46%), Positives = 177/276 (64%), Gaps = 8/276 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQ---KIVEELLTKRYAKD-VSVQRVLYDVSE 90
           ++  + +D    EELE++LI +DIGV       +I+EE L++    D  ++++ L D   
Sbjct: 74  VLGKKEIDADTLEELEEILITADIGVQTTVELIRILEERLSRNELNDGAALRQTLKDE-- 131

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            I K L    +P   D S  P VI+V+GVNGVGKTT IGKL+ + S  G KV+LAAGDTF
Sbjct: 132 -ILKRLSRDVRPLAVD-SASPFVIMVIGVNGVGKTTTIGKLAARFSREGKKVVLAAGDTF 189

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA +QL+IW +RT  D V  + G+D +A+ ++  K A A+K DVLI+DTAGRLH    
Sbjct: 190 RAAAAEQLEIWGERTGCDVVRHKEGADPSAVVFDGIKAAVARKADVLIVDTAGRLHTKVN 249

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + K+ R++ R  P APH  L VLDA TGQNAL Q ++F   A  TG+ +TK+DGTA
Sbjct: 250 LMEELKKVRRIMDREIPGAPHETLLVLDAATGQNALSQAKLFKEAAEVTGIALTKLDGTA 309

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +GG +  I    +IPV ++GVGEG++DL  F   +F
Sbjct: 310 KGGIVAAICNEFRIPVRYIGVGEGVDDLRDFDPAEF 345


>gi|296161521|ref|ZP_06844326.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           Ch1-1]
 gi|295888165|gb|EFG67978.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           Ch1-1]
          Length = 385

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/302 (44%), Positives = 182/302 (60%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L  G + TS  L    T I    ++D+ + EELE  L+ SD GV   + ++E L 
Sbjct: 89  SWLTRLKTGLSKTSSSL----TGIFVGAKIDEDLYEELETALLMSDAGVDATEYLLEALR 144

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+  +L PL K      +  P V+++ GVNG GKTT IGK
Sbjct: 145 EKVRAERLTDPQQVKAALRTLLVDLLRPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 203

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A   A+
Sbjct: 204 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVSQESG-DPAAVIFDAVGAAR 262

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 263 ARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQEGAPHEVLLVIDANTGQNALAQVK 322

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++FS  +
Sbjct: 323 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDAL 382

Query: 311 TG 312
            G
Sbjct: 383 LG 384


>gi|225180936|ref|ZP_03734384.1| signal recognition particle-docking protein FtsY [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168417|gb|EEG77220.1| signal recognition particle-docking protein FtsY [Dethiobacter
           alkaliphilus AHT 1]
          Length = 310

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 126/287 (43%), Positives = 182/287 (63%), Gaps = 2/287 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           ++ +G   T   +   +  + +    DD   EELE++LI +D+GV    +I + L  K R
Sbjct: 6   RIKEGLKKTRSGIMGRMEGLFARSSFDDEFYEELEEVLIGADVGVETTMQITDSLREKVR 65

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K    Q+V+  +  L+  +L     P       +P VILV+GVNGVGKTT IGKL+ +
Sbjct: 66  EEKAREPQQVMDILKGLLLDILGRDVVPLELS-EQKPTVILVLGVNGVGKTTTIGKLAHR 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             + G KV+LAAGDTFR+AAI+QL+IWA R  +D +  + GSD +A+ ++    A ++  
Sbjct: 125 YKNEGKKVLLAAGDTFRAAAIEQLEIWAGRAQSDIIKHQQGSDPSAVLFDGVTAAVSRGS 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV++ DTAGRLHN + LM  + K+ RV+++  P APH VL VLDATTGQNAL Q ++F+ 
Sbjct: 185 DVVLCDTAGRLHNKANLMEELKKVRRVVEKALPGAPHEVLLVLDATTGQNALAQAKVFNE 244

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            A  TG+ +TK+DGTA+GG +I I    K+PV  +GVGEG+ DL+PF
Sbjct: 245 AAPITGVALTKLDGTAKGGIVIAIANELKVPVKMVGVGEGVEDLQPF 291


>gi|56964061|ref|YP_175792.1| signal recognition particle GTPase [Bacillus clausii KSM-K16]
 gi|56910304|dbj|BAD64831.1| signal recognition particle GTPase [Bacillus clausii KSM-K16]
          Length = 327

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/308 (42%), Positives = 188/308 (61%), Gaps = 8/308 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+A ++     K   G   T       I ++++  R++D+   E+LE++LI +D+GV+ 
Sbjct: 9   EKMAQQTNEVADKFKHGLEKTRTSFSGKINELVARYRKIDEDFFEDLEEILIGADVGVST 68

Query: 63  AQKIVEELLTK---RYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             ++V+EL  +   R  KD   +Q V   +SE +  +L    K           VILVVG
Sbjct: 69  VMELVDELKEEVRLRNLKDTEEIQPV---ISEKLASLLEKDDKDTTLQLQEGLSVILVVG 125

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+  +   G  V+LAAGDTFR+ AIDQL +W +R     +  + GSD 
Sbjct: 126 VNGVGKTTSIGKLAHYLKGQGKSVVLAAGDTFRAGAIDQLDVWGERVGVPVIKQQEGSDP 185

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+++K DVLI DTAGRL N   LM  + K+ RV++R  P APH VL V+D
Sbjct: 186 AAVMYDAIAWARSRKADVLICDTAGRLQNKVNLMNELAKVKRVIEREVPGAPHEVLLVVD 245

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q + F A    +GL++TK+DGTA+GG +I I     +PV F+G+GE  +DL
Sbjct: 246 ATTGQNALSQAKAFAASTDVSGLVLTKLDGTAKGGIVIAIRQELDLPVKFIGLGEQKDDL 305

Query: 299 EPFVAKDF 306
           +PF A+ F
Sbjct: 306 QPFDAEQF 313


>gi|307824536|ref|ZP_07654761.1| signal recognition particle-docking protein FtsY [Methylobacter
           tundripaludum SV96]
 gi|307734520|gb|EFO05372.1| signal recognition particle-docking protein FtsY [Methylobacter
           tundripaludum SV96]
          Length = 664

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 124/279 (44%), Positives = 175/279 (62%), Gaps = 15/279 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK- 94
           +  + +D+ + EE+E  L+ +DIGV    +I++ L         SV+R   +  E +   
Sbjct: 385 LGRQEIDEDLLEEIEASLLMADIGVDATTEIIKRLTE-------SVERHQLNDGEALSAA 437

Query: 95  -------MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
                  ML P SK  +     +P VILVVGVNG GKTT IGKL+K++   G  VMLAAG
Sbjct: 438 LKQELLIMLQPCSKNLHIPKQDKPFVILVVGVNGAGKTTTIGKLAKRLQAQGHSVMLAAG 497

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QL+ W +R +   V    G+D+A++ Y+  + AQAK +DVLI DTAGRLH 
Sbjct: 498 DTFRAAAVEQLQTWGERNNIHVVAQHTGADSASVIYDGVQSAQAKGIDVLIADTAGRLHT 557

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            S LM  + K+ R++ +LD  APH VL VLDA TGQNAL Q ++F+     TGL++TK+D
Sbjct: 558 KSNLMDELKKVKRIMSKLDETAPHEVLLVLDAGTGQNALSQTKLFNETVELTGLVLTKLD 617

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GTA+GG +  +     IP+ F+G+GEGI+DL+ F A  F
Sbjct: 618 GTAKGGIIFALAKQFGIPIRFIGIGEGIDDLQDFDADAF 656


>gi|260911739|ref|ZP_05918315.1| signal recognition particle-docking protein FtsY [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260634164|gb|EEX52278.1| signal recognition particle-docking protein FtsY [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 317

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/297 (43%), Positives = 183/297 (61%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T   +   +T  ++ + ++DD V ++LE++LI SD+GV    KI+E +   R 
Sbjct: 15  LDKGLEKTKQSVFSKLTRAVAGKSKVDDEVLDDLEEILITSDVGVDTTLKIIERI-EARV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMP--LSKPFNWDFSH--RPHVILVVGVNGVGKTTVIG 129
           A+D  VS   +   + E I  +L         NWD      P+VILVVGVNGVGKTT IG
Sbjct: 74  ARDKYVSTNELNNILKEEITALLSENNTQDNDNWDLPQTGNPYVILVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KV L A DTFR+AA++Q+ IW +R     V  ++GSD A++A++    A
Sbjct: 134 KLAHQFKQAGKKVYLGAADTFRAAAVEQICIWGERVGVPVVKQQMGSDPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +TGQNA  Q 
Sbjct: 194 KANGADVVIIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPNEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F  + F
Sbjct: 254 KQFSAVTNITALAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFNRQHF 310


>gi|121999083|ref|YP_001003870.1| signal recognition particle-docking protein FtsY [Halorhodospira
           halophila SL1]
 gi|121590488|gb|ABM63068.1| signal recognition particle-docking protein FtsY [Halorhodospira
           halophila SL1]
          Length = 315

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 117/258 (45%), Positives = 161/258 (62%), Gaps = 1/258 (0%)

Query: 55  RSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           ++D+G+   QK+++ L+ +   +   + + VL  +   I K+L P+ KP   D   RP V
Sbjct: 56  QADVGMEATQKVLDGLVERLGGSGGGTGETVLEALRSEIVKVLEPVEKPLQIDTDKRPFV 115

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL VGVNG GKTT IGKL+ +  + G  VM+AAGDTFR+AA+DQL+ W +R     +   
Sbjct: 116 ILTVGVNGAGKTTTIGKLAARFQNEGRSVMVAAGDTFRAAAVDQLQQWGERVGCPVIAQP 175

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            GSD A++ ++A + A+A+  DVLI DTAGRLH    LM  + K+ RVL R D  APH  
Sbjct: 176 TGSDPASVVFDAHQAARARGADVLIADTAGRLHTQDNLMEELRKIRRVLGRQDADAPHET 235

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLD   GQNAL Q E F A    TGL +TK+DGTARGG L+ +    ++PV ++GVGE
Sbjct: 236 LLVLDGGNGQNALAQAEQFGAAVNVTGLAVTKLDGTARGGVLLALAERLQVPVRYIGVGE 295

Query: 294 GINDLEPFVAKDFSAVIT 311
            + DL  F A DF+  +T
Sbjct: 296 KVEDLRTFRAADFAEALT 313


>gi|227524602|ref|ZP_03954651.1| signal recognition particle-docking protein FtsY [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088277|gb|EEI23589.1| signal recognition particle-docking protein FtsY [Lactobacillus
           hilgardii ATCC 8290]
          Length = 481

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/316 (41%), Positives = 189/316 (59%), Gaps = 20/316 (6%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           + + ASES    +   KG A +     + +  ++++ R +D+   ++LED+LI SD+G  
Sbjct: 163 DSETASES-GATQSYEKGLAKSRSSFGQKLNALLANFRHVDESFFDDLEDMLIESDVGFE 221

Query: 62  VAQKIV----EELLTKRYAKDVSVQRV-------LYDVSELIHKMLMPLSKPFNWDFSHR 110
            + KI     EE+  +   K   VQ V       +YD +       + L+K         
Sbjct: 222 TSMKIADDLREEVKLQNAKKPKDVQNVIVKKLIDMYDQAGNGENPAINLAK-------SG 274

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VIL+VGVNGVGKTT IGK++K   D G KV+LAA DTFR+ AI+QL +WA R   D V
Sbjct: 275 PTVILMVGVNGVGKTTTIGKMAKMYKDQGKKVVLAAADTFRAGAIEQLNVWAQRDGVDIV 334

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S+  SD +++ ++A K+A+ +  D+L++DTAGRL N   LM  + KM ++L R  P AP
Sbjct: 335 KSKPKSDPSSVVFDAVKKARDEHYDILMVDTAGRLQNKVNLMNELSKMKKILTREIPEAP 394

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H VL VLDATTGQNA+ Q +MF      TG+++TK+DGTARGG ++ I     +PV ++G
Sbjct: 395 HEVLLVLDATTGQNAMTQAKMFKETTDVTGIVLTKLDGTARGGIVLAIRSELHLPVKYVG 454

Query: 291 VGEGINDLEPFVAKDF 306
           +GE + DL+PF   DF
Sbjct: 455 LGEKVTDLKPFDPNDF 470


>gi|77461558|ref|YP_351065.1| signal recognition particle-docking protein FtsY [Pseudomonas
           fluorescens Pf0-1]
 gi|77385561|gb|ABA77074.1| cell division protein [Pseudomonas fluorescens Pf0-1]
          Length = 515

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 125/296 (42%), Positives = 189/296 (63%), Gaps = 2/296 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  + +  + +DD + ++LE  L+ +D+GV     I++ L 
Sbjct: 209 FFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLDDLETRLLTADVGVEATSVIIQRLT 268

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   K+++    LY  +   +  ML P+ +P      ++P VILVVGVNG GKTT IGK
Sbjct: 269 QKVARKELADSDALYKSLQAELAAMLKPVEQPLKIASRNKPFVILVVGVNGAGKTTTIGK 328

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A+
Sbjct: 329 LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVIFDAVQAAK 388

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q +
Sbjct: 389 ARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQAK 448

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F
Sbjct: 449 QFNQTVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 504


>gi|313206703|ref|YP_004045880.1| signal recognition particle-docking protein ftsy [Riemerella
           anatipestifer DSM 15868]
 gi|312446019|gb|ADQ82374.1| signal recognition particle-docking protein FtsY [Riemerella
           anatipestifer DSM 15868]
 gi|315023770|gb|EFT36772.1| Signal recognition particle receptor protein FtsY (alpha subunit)
           [Riemerella anatipestifer RA-YM]
 gi|325335858|gb|ADZ12132.1| FtsY [Riemerella anatipestifer RA-GD]
          Length = 318

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 185/295 (62%), Gaps = 6/295 (2%)

Query: 17  LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L +G   +S    E I+  +I   ++DD V ++LE++LI SD+G     KI+E +   R 
Sbjct: 16  LDRGLEKSSQGFFEKISKAVIGKSKVDDEVLDDLEEVLIASDVGAQTTIKIIERI-EDRV 74

Query: 76  AKD--VSVQRVLYDVSELIHKMLM--PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           A+D  V V  +   + E I  +L+  P +   N D + +P+VI+VVGVNGVGKTT IGKL
Sbjct: 75  ARDKYVGVDELHKLLKEEITALLLENPHADTGNIDEAKKPYVIMVVGVNGVGKTTTIGKL 134

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KV+L A DTFR+AA+DQL IW++R     V   +GSD A++A++  + A A
Sbjct: 135 AHQFKTQGKKVVLGAADTFRAAAVDQLVIWSERVGVPIVKQNMGSDPASVAFDTVQSAVA 194

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV++IDTAGRLHN   LM  + K+ RV++++ P APH VL VLD +TGQNA  Q + 
Sbjct: 195 QNADVVLIDTAGRLHNKVNLMNELSKIKRVMQKVIPDAPHEVLLVLDGSTGQNAFEQAKQ 254

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F A      L +TK+DGTA+GG +I I    ++PV ++GVGE + DL+ F   +F
Sbjct: 255 FTAATEVNALAVTKLDGTAKGGVVIGISDQFQVPVKYIGVGEKMEDLQLFNGTEF 309


>gi|167917481|ref|ZP_02504572.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei BCC215]
 gi|254187806|ref|ZP_04894318.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254197031|ref|ZP_04903455.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei S13]
 gi|254261869|ref|ZP_04952923.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1710a]
 gi|157935486|gb|EDO91156.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169653774|gb|EDS86467.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei S13]
 gi|254220558|gb|EET09942.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1710a]
          Length = 439

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ L 
Sbjct: 144 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 199

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 200 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 258

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 259 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 317

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 318 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 377

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 378 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 437

Query: 311 TG 312
            G
Sbjct: 438 LG 439


>gi|253999629|ref|YP_003051692.1| signal recognition particle-docking protein FtsY [Methylovorus sp.
           SIP3-4]
 gi|253986308|gb|ACT51165.1| signal recognition particle-docking protein FtsY [Methylovorus sp.
           SIP3-4]
          Length = 341

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 186/301 (61%), Gaps = 3/301 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A   LSW  +L  G A T  +L   +  +    ++D+ V EELE +L+ SD+GVA  Q +
Sbjct: 37  AENKLSWTERLKNGLAKTRSQLGNQLASLFGGGKIDEDVYEELETILLTSDVGVAATQAL 96

Query: 67  VEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E++  +   + +S   ++   + + + ++L PL KP     +H+P VI++ GVNG GKT
Sbjct: 97  LEQIRQRVKRQSLSDTTQLKQALKDALLELLAPLEKPL-VTTTHQPFVIMLAGVNGAGKT 155

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+      G  V++AAGDTFR+AA +QL+ W DR +   V  E G D AA+ ++A
Sbjct: 156 TSIGKLANLFQAQGKSVLIAAGDTFRAAAREQLQAWGDRNNVHVVAQESG-DPAAVIFDA 214

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+ +D+++ DTAGRL     LM  I K+ RV+ +  P APH +L VLDA TGQNA
Sbjct: 215 VNSAKARNIDIVLADTAGRLPTQLNLMEEIRKVQRVIGKALPGAPHEILLVLDANTGQNA 274

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGL+++K+DGTA+GG +  I     IP+ ++GVGE I DL PF A++
Sbjct: 275 ISQVKAFDDALGVTGLVLSKLDGTAKGGVIAAIAQARPIPIRYIGVGESIADLRPFKAEE 334

Query: 306 F 306
           F
Sbjct: 335 F 335


>gi|217419579|ref|ZP_03451085.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 576]
 gi|217396883|gb|EEC36899.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 576]
          Length = 439

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ L 
Sbjct: 144 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 199

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 200 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 258

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 259 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 317

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 318 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 377

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 378 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 437

Query: 311 TG 312
            G
Sbjct: 438 LG 439


>gi|289550985|ref|YP_003471889.1| Signal recognition particle receptor protein FtsY, alpha subunit
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180517|gb|ADC87762.1| Signal recognition particle receptor protein FtsY, alpha subunit
           [Staphylococcus lugdunensis HKU09-01]
          Length = 353

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 183/297 (61%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-- 72
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G     ++ +EL T  
Sbjct: 28  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMQLTDELRTEA 87

Query: 73  -KRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D +  R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 88  QRRNIQDTADLREVIVEKIVEIYHQE-DDQSEVMNLE-DGRLNVILMVGVNGVGKTTTIG 145

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AI QLK+W +R   D V    GSD AA+ Y+A   A
Sbjct: 146 KLAYRYKMEGKKVMLAAGDTFRAGAIQQLKVWGERVGVDVVSQSEGSDPAAVMYDAINAA 205

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + KM RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 206 KNKGVDILICDTAGRLQNKANLMQELDKMKRVIGRAVPGAPHEALLCLDATTGQNALSQA 265

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 266 RSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 322


>gi|299536776|ref|ZP_07050084.1| cell division protein ftsY-like protein [Lysinibacillus fusiformis
           ZC1]
 gi|298727788|gb|EFI68355.1| cell division protein ftsY-like protein [Lysinibacillus fusiformis
           ZC1]
          Length = 423

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/304 (40%), Positives = 188/304 (61%), Gaps = 13/304 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S  +K   G   T       + D+++  R++D+   EELEDLL+++D+G     +++++L
Sbjct: 106 SITQKFKAGLEKTRNSFTSKVNDLVARYRKVDEDFFEELEDLLLQADVGFETVMELMDKL 165

Query: 71  ---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              + ++  KD +     +   L ++ E   + ++ L+   + + +    VIL VGVNGV
Sbjct: 166 RYEVQRKNIKDTNGIQAVISEKLVEIYEQGEEDIIELTMQPDGELT----VILFVGVNGV 221

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ ++   G  V+LAAGDTFR+ AIDQL++W DR   + +    GSD AA+ 
Sbjct: 222 GKTTTIGKLAHRLKSQGKTVVLAAGDTFRAGAIDQLQVWGDRVGCEVIKQSEGSDPAAVM 281

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+ +K DVLI DTAGRL N   LM  + K+ RV+ R  P+APH VL  LDATTG
Sbjct: 282 YDAIRAAKNRKADVLICDTAGRLQNKVNLMNELEKVHRVISREIPNAPHEVLLALDATTG 341

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL+PF 
Sbjct: 342 QNALVQAQTFKEATNVTGIVLTKLDGTAKGGIVLAIRNKLHIPVKFVGLGEKMDDLQPFD 401

Query: 303 AKDF 306
           A+ +
Sbjct: 402 AERY 405


>gi|167835367|ref|ZP_02462250.1| signal recognition particle-docking protein FtsY [Burkholderia
           thailandensis MSMB43]
          Length = 327

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/302 (43%), Positives = 183/302 (60%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  L 
Sbjct: 32  SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 87

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+  +L PL K      +  P V+++ GVNG GKTT IGK
Sbjct: 88  EKVRTGRLTDPQQVKDALRGLLVDLLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSIGK 146

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 147 LAKHLQSFNQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 205

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 206 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 265

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++F+  +
Sbjct: 266 AFDDTLGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFADAL 325

Query: 311 TG 312
            G
Sbjct: 326 LG 327


>gi|288927529|ref|ZP_06421376.1| signal recognition particle-docking protein FtsY [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288330363|gb|EFC68947.1| signal recognition particle-docking protein FtsY [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 317

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/297 (44%), Positives = 186/297 (62%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T   +   +T  I+ + ++DD V ++LE++LI SD+GV    KI+E + T R 
Sbjct: 15  LDKGLEKTKQSVFSKLTRAIAGKSKVDDEVLDDLEEILITSDVGVDTTLKIIERIET-RV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFN--WDF--SHRPHVILVVGVNGVGKTTVIG 129
           A+D  VS   +   + E I  +L   +   N  W+   +  P+VILVVGVNGVGKTT IG
Sbjct: 74  ARDKYVSTSELNNILKEEITALLSENNTQDNDSWELPDTGNPYVILVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KV L A DTFR+AA++Q+ IW +R     V  ++GSD A++A++    A
Sbjct: 134 KLAHQFKQAGKKVYLGAADTFRAAAVEQICIWGERVGVPVVKQQMGSDPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +TGQNA  Q 
Sbjct: 194 KANGADVVIIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPNEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F  + F
Sbjct: 254 KQFSAVTNITALAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFNRQHF 310


>gi|283850392|ref|ZP_06367681.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp.
           FW1012B]
 gi|283574418|gb|EFC22389.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp.
           FW1012B]
          Length = 626

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 188/299 (62%), Gaps = 3/299 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL++G A T  ++ + I  ++ S   +D+   EELE++L+ +D+G   A K++  L  + 
Sbjct: 329 KLSEGLAKTKEQIVKRIDGLLGSHAVIDEAFWEELEEILLMADVGFEPAAKLLGSLRAEV 388

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             +  +   V  ++  L H++      P      + P VI+++GVNGVGKTT I KL+ +
Sbjct: 389 RRRGTTDPAVFKEI--LRHELSEIFRTPKTIRAFNPPEVIMMIGVNGVGKTTTIAKLAHR 446

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G KV++AAGDTFR+AAI+Q++IWA R  A F     GSD AA+A+EA  +A A+ V
Sbjct: 447 DIMQGKKVLIAAGDTFRAAAIEQMQIWAKRVGAGFYTKGEGSDPAAVAFEAMDRALAEGV 506

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVL +DTAGRLH  + LM  + K+ RVL +  P APH  + VLDATTGQNAL Q  +F+ 
Sbjct: 507 DVLYLDTAGRLHTKANLMEELKKIRRVLGKKHPGAPHRSVLVLDATTGQNALSQTRLFNE 566

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            AG   +I+TK+DGTA+GG ++ I ++  IP+ ++G+GE + DL PF  +DF+  + G 
Sbjct: 567 AAGVDEIILTKLDGTAKGGVVVGIALSFGIPITYVGLGEKMEDLRPFDGQDFAQALLGV 625


>gi|71909330|ref|YP_286917.1| signal recognition particle-docking protein FtsY [Dechloromonas
           aromatica RCB]
 gi|71848951|gb|AAZ48447.1| signal recognition particle-docking protein FtsY [Dechloromonas
           aromatica RCB]
          Length = 361

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/299 (43%), Positives = 188/299 (62%), Gaps = 9/299 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL- 70
           SW  +L KG A T  +    +  I S  ++DD + EELE LL+ SD G+   Q +++EL 
Sbjct: 62  SWRERLFKGLAKTRAQWGGKLKSIFSRGKVDDELLEELETLLLTSDCGIEATQHLLDELK 121

Query: 71  -LTKRYAKDV--SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
              KR   D   ++Q+ L+DV   + + L PL +P ++  +H+P VI++ GVNG GKTT 
Sbjct: 122 KAAKRDKLDTPEAIQKALHDV---LLETLQPLEQPLDFS-THKPFVIMIAGVNGAGKTTS 177

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   +  + G D AA+ ++A  
Sbjct: 178 IGKLAKYFQTQGKSVLLAAGDTFRAAAREQLETWGERNNVTVIAQDNG-DPAAVVFDAIS 236

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +D+++ DTAGRL     LM  I K+ RV+++++P  PH  L VLDA  GQNAL+
Sbjct: 237 AAKARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIQKIEPEGPHETLLVLDANIGQNALQ 296

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           QV+ F      TGL++TK+DGTA+GG +  I      P+ F+GVGE I+DL PF AKDF
Sbjct: 297 QVKAFDKAIKVTGLVLTKLDGTAKGGVVTAIARQCPKPIRFIGVGEQIDDLRPFSAKDF 355


>gi|261364318|ref|ZP_05977201.1| signal recognition particle-docking protein FtsY [Neisseria mucosa
           ATCC 25996]
 gi|288567574|gb|EFC89134.1| signal recognition particle-docking protein FtsY [Neisseria mucosa
           ATCC 25996]
          Length = 483

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 183/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 182 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 241

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 242 RNRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 301

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   +    G D+AA+ ++A + A
Sbjct: 302 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTG-DSAAVCFDAVQAA 360

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVLK+  P APH ++ VLDA  GQNA+ QV
Sbjct: 361 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLKKAMPDAPHEIIVVLDANIGQNAVNQV 420

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 421 KAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFNARAF 477


>gi|126451651|ref|YP_001064860.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1106a]
 gi|126225293|gb|ABN88833.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1106a]
          Length = 476

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ L 
Sbjct: 181 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 236

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 237 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 295

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 296 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 354

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 355 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 414

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 415 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 474

Query: 311 TG 312
            G
Sbjct: 475 LG 476


>gi|76808739|ref|YP_332160.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1710b]
 gi|76578192|gb|ABA47667.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1710b]
          Length = 476

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ L 
Sbjct: 181 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALR 236

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 237 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 295

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 296 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 354

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 355 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 414

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 415 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 474

Query: 311 TG 312
            G
Sbjct: 475 LG 476


>gi|330995101|ref|ZP_08319018.1| signal recognition particle-docking protein FtsY [Paraprevotella
           xylaniphila YIT 11841]
 gi|329576677|gb|EGG58180.1| signal recognition particle-docking protein FtsY [Paraprevotella
           xylaniphila YIT 11841]
          Length = 318

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/303 (41%), Positives = 189/303 (62%), Gaps = 8/303 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T       +T  ++ + ++DD V + LE++L+ SD+GV     I++ +  KR 
Sbjct: 15  LDKGLEKTKESFFGKLTRAVAGKSKVDDDVLDRLEEVLVTSDVGVDTTLNIIDRI-EKRV 73

Query: 76  AKD--VSVQR---VLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A+D  V+V     +L D ++ L+ +     ++ F      +P+VI+VVGVNGVGKTT IG
Sbjct: 74  ARDKYVTVNELNDILRDEIASLLTENNTADTEGFVLPEGKKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KV L A DTFR+AA++QL+IW++R     V  ++GSD A++A++    A
Sbjct: 134 KLAYQFKKAGKKVYLGASDTFRAAAVEQLEIWSERVGVPIVKQQMGSDPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV++IDTAGRLHN   LM  + K+ RV++++ P APH V+ VLD +TGQNA  Q 
Sbjct: 194 TANGADVVLIDTAGRLHNKKGLMDELSKIKRVMQKVVPDAPHDVMLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+PF  K+F   
Sbjct: 254 KQFTLATEVTSMAITKLDGTAKGGVVIGISDQFKIPVRYIGLGEGVEDLQPFNRKEFVKS 313

Query: 310 ITG 312
           + G
Sbjct: 314 LFG 316


>gi|228473872|ref|ZP_04058614.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228274713|gb|EEK13547.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 317

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/299 (42%), Positives = 180/299 (60%), Gaps = 12/299 (4%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL----L 71
           L KG   +     + +T  I+ + ++DD + +ELE +L+ SD+GV    KI+E +     
Sbjct: 16  LDKGLEKSKTSFFDKLTRAIAGKSKVDDDILDELEGVLVSSDVGVDTTLKIIERIEKRVA 75

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTV 127
            ++Y     + R+L    E I  +L    +    DFS     +P+VI+VVGVNG GKTT 
Sbjct: 76  QEKYLGTSELNRIL---REEIAALLSQTQRGEEVDFSVPSNKKPYVIMVVGVNGAGKTTT 132

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    GLKV+L A DTFR+AAIDQL++WA+R     V  + GSD A++AY+   
Sbjct: 133 IGKLAYQFKKKGLKVVLGAADTFRAAAIDQLQVWAERVGVPLVKQQTGSDPASVAYDTLS 192

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A ++  DV+IIDTAGRLHN   LM  + K+ RV+++L P  P  +L VLD +TGQNA  
Sbjct: 193 SALSQGADVVIIDTAGRLHNKVNLMNELSKVKRVMQKLLPETPDEILLVLDGSTGQNAFE 252

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q + F        L +TK+DGTA+GG +I I    +IPV ++GVGEGI DL+ F   +F
Sbjct: 253 QAKQFTLATEVNALAITKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEF 311


>gi|149371256|ref|ZP_01890742.1| signal recognition particle-docking protein FtsY [unidentified
           eubacterium SCB49]
 gi|149355394|gb|EDM43953.1| signal recognition particle-docking protein FtsY [unidentified
           eubacterium SCB49]
          Length = 318

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/302 (43%), Positives = 183/302 (60%), Gaps = 22/302 (7%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  KL K  A  S              ++D  V ++LE++L+ SD+GV    K+++ + 
Sbjct: 26  SFFSKLNKAVAGKS--------------KVDASVLDDLEEVLVSSDVGVTTTLKVIDRI- 70

Query: 72  TKRYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HR--PHVILVVGVNGVGK 124
             R AKD  V    +   + E I  +L  +       F+   H   PHVI+VVGVNG GK
Sbjct: 71  EARVAKDKYVGTSELNAILREEIAGLLSEIDSGNESQFTIPKHETGPHVIMVVGVNGAGK 130

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ + S AG KV+L A DTFR+AAIDQL++WADRT+   V   +GSD A++A++
Sbjct: 131 TTTIGKLAHQFSKAGHKVVLGAADTFRAAAIDQLQVWADRTNVPIVKQAMGSDPASVAFD 190

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             +    +  DV+IIDTAGRLHN   LM  + K+ RV++++ P APH VL VLD +TGQN
Sbjct: 191 TLESGVKQNADVIIIDTAGRLHNKINLMNELTKVKRVMQKVIPDAPHDVLLVLDGSTGQN 250

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGI+DL+ F   
Sbjct: 251 AFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIDDLQVFNKF 310

Query: 305 DF 306
           +F
Sbjct: 311 EF 312


>gi|315658480|ref|ZP_07911352.1| cell division protein FtsY [Staphylococcus lugdunensis M23590]
 gi|315496809|gb|EFU85132.1| cell division protein FtsY [Staphylococcus lugdunensis M23590]
          Length = 407

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 183/297 (61%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-- 72
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G     ++ +EL T  
Sbjct: 82  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMQLTDELRTEA 141

Query: 73  -KRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D +  R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 142 QRRNIQDTADLREVIVEKIVEIYHQE-DDQSEVMNLE-DGRLNVILMVGVNGVGKTTTIG 199

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AI QLK+W +R   D V    GSD AA+ Y+A   A
Sbjct: 200 KLAYRYKMEGKKVMLAAGDTFRAGAIQQLKVWGERVGVDVVSQSEGSDPAAVMYDAINAA 259

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + KM RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 260 KNKGVDILICDTAGRLQNKANLMQELDKMKRVIGRAVPGAPHEALLCLDATTGQNALSQA 319

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 320 RSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 376


>gi|332521170|ref|ZP_08397628.1| signal recognition particle-docking protein FtsY [Lacinutrix
           algicola 5H-3-7-4]
 gi|332043263|gb|EGI79460.1| signal recognition particle-docking protein FtsY [Lacinutrix
           algicola 5H-3-7-4]
          Length = 324

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/307 (42%), Positives = 185/307 (60%), Gaps = 21/307 (6%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   TS      ++  ++ + ++DD V + LE++L+ SD+GV    K++E +   R 
Sbjct: 16  LDKGLEKTSTSFLGKLSKAVAGKSKVDDDVLDNLEEVLVSSDVGVNTTLKVIERI-EARV 74

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSK-----------PFNWDFSHRPHVILVVGV 119
           AKD       + R+L    E I  +L   +            P   D    P+V++VVGV
Sbjct: 75  AKDKYLGTDELNRIL---REEIAGLLSETNSGEETEYKIPTLPPQEDGKKTPYVLMVVGV 131

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    GLKV+L A DTFR+AAIDQL++WADR     V  E+GSD A
Sbjct: 132 NGVGKTTTIGKLAYQFKKQGLKVVLGAADTFRAAAIDQLQVWADRVDVPMVRQEMGSDPA 191

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A +   ++  DV+IIDTAGRLHN   LM  + K+ RV++++   APH VL VLD 
Sbjct: 192 SVAFDALESGVSQDADVIIIDTAGRLHNKVNLMNELTKVKRVMQKVIGDAPHDVLLVLDG 251

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGI DL+
Sbjct: 252 STGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQ 311

Query: 300 PFVAKDF 306
            F   +F
Sbjct: 312 VFNKYEF 318


>gi|167718007|ref|ZP_02401243.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei DM98]
          Length = 337

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  L 
Sbjct: 42  SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 97

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 98  EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 156

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 157 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 215

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 216 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 275

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 276 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 335

Query: 311 TG 312
            G
Sbjct: 336 LG 337


>gi|294673494|ref|YP_003574110.1| recognition particle-docking protein FtsY [Prevotella ruminicola
           23]
 gi|294472858|gb|ADE82247.1| recognition particle-docking protein FtsY [Prevotella ruminicola
           23]
          Length = 317

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 187/296 (63%), Gaps = 6/296 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV----AVAQKIVEELL 71
           L KG   T   + + +T  ++ + ++DD V + LE++LI SD+GV     + Q+I E + 
Sbjct: 15  LDKGLEKTKTSVFDKLTRAVAGKSKVDDDVLDNLEEVLITSDVGVDTTLKIIQRIEERVA 74

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +Y     + R+L + ++EL+ +     +  ++    H+P+VILVVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTSELNRILREEIAELLAENNSDDNDNWDLPADHKPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV L A DTFR+AA++QL IW +R     +  ++GSD A++A++  + A+
Sbjct: 135 LAWQFKQAGKKVYLGAADTFRAAAVEQLCIWGERVGVPVIKQQMGSDPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  V+ VLD +TGQNA  Q +
Sbjct: 195 ANGADVVLIDTAGRLHNKVGLMNELKKIKDVMKKVLPEAPDEVMLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F  + F
Sbjct: 255 QFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMTDLQLFNKRQF 310


>gi|332879559|ref|ZP_08447254.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332682525|gb|EGJ55427.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 318

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/303 (41%), Positives = 189/303 (62%), Gaps = 8/303 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T       +T  ++ + ++DD V + LE++L+ SD+GV     I++ +  KR 
Sbjct: 15  LDKGLEKTKESFFGKLTRAVAGKSKVDDDVLDRLEEVLVTSDVGVDTTLNIIDRI-EKRV 73

Query: 76  AKD--VSVQR---VLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A+D  V+V     +L D ++ L+ +     ++ F      +P+VI+VVGVNGVGKTT IG
Sbjct: 74  ARDKYVTVNELNDILRDEIASLLTENNTADTEGFVLPEGKKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KV L A DTFR+AA++QL+IW++R     V  ++GSD A++A++    A
Sbjct: 134 KLAYQFKKAGKKVYLGASDTFRAAAVEQLEIWSERVGVPIVKQQMGSDPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV++IDTAGRLHN   LM  + K+ RV++++ P APH V+ VLD +TGQNA  Q 
Sbjct: 194 MANGADVVLIDTAGRLHNKKGLMDELSKIKRVMQKVVPDAPHDVMLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+PF  K+F   
Sbjct: 254 KQFTLATEVTSMAITKLDGTAKGGVVIGISDQFKIPVRYIGLGEGVEDLQPFNRKEFVKS 313

Query: 310 ITG 312
           + G
Sbjct: 314 LFG 316


>gi|167037691|ref|YP_001665269.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116106|ref|YP_004186265.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856525|gb|ABY94933.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929197|gb|ADV79882.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 319

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 132/314 (42%), Positives = 198/314 (63%), Gaps = 17/314 (5%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVA 63
           + A E   + +K+ +G   T   L   I  I++  R++D+ + EELE++LI +DIG++  
Sbjct: 13  ETAEEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGISTT 72

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILV 116
            KI+E +  K      + +R +YD S++       ++++L    +PF       P VIL 
Sbjct: 73  SKIIEGIRQK------AKERKIYDASQIKELLAEEVYEILQKDVEPFTL---TSPMVILN 123

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+      G KVMLAAGDTFR+AAIDQL+IWA+R +   +  + GS
Sbjct: 124 VGVNGVGKTTTIGKLAYLYKKEGKKVMLAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGS 183

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++ ++  + ++A+ +D+LI DTAGRLHN   LM  + K+ RV+ R  P A      V
Sbjct: 184 DPASVIFDGIQASKARGIDILICDTAGRLHNKKNLMEELRKIRRVIDREYPEARVETFLV 243

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL+Q ++F  V+  TG+++TK+DGTA+GG ++ I     +P+ ++G+GEGI 
Sbjct: 244 LDATTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGIGEGIE 303

Query: 297 DLEPFVAKDFSAVI 310
           DL+ F AK F + I
Sbjct: 304 DLQAFDAKSFVSAI 317


>gi|167737024|ref|ZP_02409798.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 14]
          Length = 337

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  L 
Sbjct: 42  SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 97

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 98  EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 156

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 157 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 215

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 216 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 275

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 276 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 335

Query: 311 TG 312
            G
Sbjct: 336 LG 337


>gi|298369773|ref|ZP_06981090.1| signal recognition particle-docking protein FtsY [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282330|gb|EFI23818.1| signal recognition particle-docking protein FtsY [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 410

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 118/296 (39%), Positives = 185/296 (62%), Gaps = 2/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  +L +G A +  ++ + +  +    ++D+ + EELE +LI SD+G+   + +++++ 
Sbjct: 110 SWAARLRQGLAKSRNQMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDVR 169

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IGK
Sbjct: 170 NRVSLKGLKDGNELRGALKEAVYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGK 229

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A+
Sbjct: 230 LAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAAK 288

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV+
Sbjct: 289 ARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVK 348

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 349 AFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFNARAF 404


>gi|86142309|ref|ZP_01060819.1| signal recognition particle-docking protein FtsY [Leeuwenhoekiella
           blandensis MED217]
 gi|85831061|gb|EAQ49518.1| signal recognition particle-docking protein FtsY [Leeuwenhoekiella
           blandensis MED217]
          Length = 317

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 125/276 (45%), Positives = 175/276 (63%), Gaps = 14/276 (5%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYD-----VSE 90
           ++DD V ++LE++L+ SD+GVA   KI+E +  +    +Y     +  +L D     +SE
Sbjct: 40  KVDDEVLDDLEEVLVSSDVGVATTIKIIERIEARVARDKYLGTDELNAILRDEIAGLMSE 99

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
                    S P     S +P+VI+VVGVNGVGKTT IGKL+ +    GLKV+L A DTF
Sbjct: 100 TNSGEATDFSIP-----SKKPYVIMVVGVNGVGKTTTIGKLAHQFKSKGLKVVLGAADTF 154

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AAIDQL+IWADR     +  ++GSD A++A++  + A     DV+IIDTAGRLHN   
Sbjct: 155 RAAAIDQLQIWADRVDVPIIKQQMGSDPASVAFDTVQSAVKLDADVVIIDTAGRLHNKVN 214

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + K+ RV++++ P AP  VL VLD +TGQNA  Q + F A    T L +TK+DGTA
Sbjct: 215 LMKELTKVKRVMQKVVPDAPDEVLLVLDGSTGQNAFEQAKQFTAATEVTSLAVTKLDGTA 274

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +GG +I I    +IPV ++GVGEGI+DL+ F   +F
Sbjct: 275 KGGVVIGISDQFQIPVKYIGVGEGIDDLQVFNKIEF 310


>gi|157804145|ref|YP_001492694.1| 50S ribosomal protein L32 [Rickettsia canadensis str. McKiel]
 gi|157785408|gb|ABV73909.1| 50S ribosomal protein L32 [Rickettsia canadensis str. McKiel]
          Length = 303

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/303 (42%), Positives = 194/303 (64%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++L++   EELE+LLI SD+ V+V   I+EEL
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLNEETLEELEELLISSDMSVSVVTNIIEEL 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ +++    V   +++LI + L+    PF+ D +++ +V+LV GVNG GKTT IGK
Sbjct: 62  KKVKFNEEIDSSTVKAALAKLIEEQLLNSEIPFSLD-ANKLNVVLVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G K+ +AA DTFR+AA++QL I  DR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKIAVAACDTFRAAAVNQLSILIDRANALLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD   P HS+L V+DA TGQN   Q 
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELTKIVKVIKKLDESTPTHSIL-VIDAITGQNTYNQA 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E FH     TGLI+TK+DG+A+ G ++ +V    +PVYF+G+GE I DL+ F   DF+  
Sbjct: 240 EHFHNATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPVYFIGIGEKIEDLKIFDRHDFAKS 299

Query: 310 ITG 312
           + G
Sbjct: 300 LVG 302


>gi|281425610|ref|ZP_06256523.1| signal recognition particle-docking protein FtsY [Prevotella oris
           F0302]
 gi|299140826|ref|ZP_07033964.1| signal recognition particle-docking protein FtsY [Prevotella oris
           C735]
 gi|281400197|gb|EFB31028.1| signal recognition particle-docking protein FtsY [Prevotella oris
           F0302]
 gi|298577792|gb|EFI49660.1| signal recognition particle-docking protein FtsY [Prevotella oris
           C735]
          Length = 316

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/297 (42%), Positives = 187/297 (62%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T   +   +T  ++ + ++DD V + LE++LI SD+GV    K++E +  +R 
Sbjct: 15  LDKGLEKTKESVFSKLTRAVAGKSKVDDEVLDNLEEVLITSDVGVDTTLKVIERI-EERV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFN--WDF--SHRPHVILVVGVNGVGKTTVIG 129
           A+D  VS   +   + E I  +L   +   N  W+    H+P+VILVVGVNGVGKTT IG
Sbjct: 74  ARDKYVSTSELNGILREEIASLLAENNTDDNDSWELPSDHKPYVILVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +  +AG KV L A DTFR+AA++Q+ IW +R     +  ++GSD A++A++  + A
Sbjct: 134 KLAYQFKNAGKKVFLGAADTFRAAAVEQISIWGERVGVPVIKQQMGSDPASVAFDTLQSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  V+ VLD +TGQNA  Q 
Sbjct: 194 KANGADVVLIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPDEVMLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GE + DL+ F  K+F
Sbjct: 254 KQFSAVTNITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEQMEDLQLFNRKEF 310


>gi|157826227|ref|YP_001493947.1| Signal recognition particle-docking protein FtsY [Rickettsia akari
           str. Hartford]
 gi|157800185|gb|ABV75439.1| Signal recognition particle-docking protein FtsY [Rickettsia akari
           str. Hartford]
          Length = 303

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/303 (42%), Positives = 191/303 (63%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD    EELE+LLI SD+ ++V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDTETLEELEELLIASDMSISVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   ++ELI + L     PF  +  ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAELIEQQLSKAEIPFTLN-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AA++QL  W DR +A  +  E  +D A++AY A +++ 
Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSSWVDRANALLITGEESADPASVAYRAMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQV 249
            + +D+L +DTAGRLHN   LM  + K+++V+ +LD HA  HS+L V+DA TGQN   Q+
Sbjct: 181 KQNIDMLFLDTAGRLHNKKNLMDELSKIVKVITKLDGHAHTHSIL-VIDAITGQNTYNQI 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TGLI+TK+DG+A+ G L+ +V    +PVYF+G+GE I DL+ F   DF+  
Sbjct: 240 EHFNNATNLTGLIVTKLDGSAKAGVLVGVVQKFNLPVYFIGIGEKIEDLKIFHRHDFAKS 299

Query: 310 ITG 312
           + G
Sbjct: 300 LVG 302


>gi|83718719|ref|YP_441024.1| signal recognition particle-docking protein FtsY [Burkholderia
           thailandensis E264]
 gi|257140323|ref|ZP_05588585.1| signal recognition particle-docking protein FtsY [Burkholderia
           thailandensis E264]
 gi|83652544|gb|ABC36607.1| signal recognition particle-docking protein FtsY [Burkholderia
           thailandensis E264]
          Length = 433

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/302 (43%), Positives = 184/302 (60%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD GV   + ++  L 
Sbjct: 138 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGVDATEHLLGALR 193

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL +      +  P V+++ GVNG GKTT IGK
Sbjct: 194 EKVRTGRLTDPQQVKDALRGLLVELLTPLEQSLVLGRAQ-PLVMMIAGVNGAGKTTSIGK 252

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 253 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 311

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 312 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 371

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++F+  +
Sbjct: 372 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFADAL 431

Query: 311 TG 312
            G
Sbjct: 432 LG 433


>gi|313201669|ref|YP_004040327.1| signal recognition particle-docking protein ftsy [Methylovorus sp.
           MP688]
 gi|312440985|gb|ADQ85091.1| signal recognition particle-docking protein FtsY [Methylovorus sp.
           MP688]
          Length = 344

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 186/301 (61%), Gaps = 3/301 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A   LSW  +L  G A T  +L   +  +    ++D+ V EELE +L+ SD+GVA  Q +
Sbjct: 40  AENKLSWTERLKNGLAKTRSQLGNQLASLFGGGKIDEDVYEELETILLTSDVGVAATQAL 99

Query: 67  VEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E++  +   + +S   ++   + + + ++L PL KP     +H+P VI++ GVNG GKT
Sbjct: 100 LEQIRQRVKRQSLSDTTQLKQALKDALLELLAPLEKPL-VTTTHQPFVIMLAGVNGAGKT 158

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+      G  V++AAGDTFR+AA +QL+ W DR +   V  E G D AA+ ++A
Sbjct: 159 TSIGKLANLFQVQGKSVLIAAGDTFRAAAREQLQAWGDRNNVHVVAQESG-DPAAVIFDA 217

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+ +D+++ DTAGRL     LM  I K+ RV+ +  P APH +L VLDA TGQNA
Sbjct: 218 VNSAKARNIDIVLADTAGRLPTQLNLMEEIRKVQRVIGKALPGAPHEILLVLDANTGQNA 277

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGL+++K+DGTA+GG +  I     IP+ ++GVGE I DL PF A++
Sbjct: 278 ISQVKAFDDALGVTGLVLSKLDGTAKGGVIAAIAQARPIPIRYIGVGESIADLRPFKAEE 337

Query: 306 F 306
           F
Sbjct: 338 F 338


>gi|163787980|ref|ZP_02182426.1| putative recognition particle-docking protein [Flavobacteriales
           bacterium ALC-1]
 gi|159876300|gb|EDP70358.1| putative recognition particle-docking protein [Flavobacteriales
           bacterium ALC-1]
          Length = 324

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/308 (42%), Positives = 182/308 (59%), Gaps = 28/308 (9%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  KL K  A  S              ++DD V + LE++L+ SD+GV    K++E + 
Sbjct: 26  SFFNKLNKAVAGKS--------------KVDDDVLDNLEEILVTSDVGVNTTLKVIERI- 70

Query: 72  TKRYAKD--VSVQRVLYDVSELIHKMLMPLSK-----------PFNWDFSHRPHVILVVG 118
            +R AKD  +    +   + E I  +L   +            P   D S  P+V++VVG
Sbjct: 71  EERVAKDKYLGTSELNKILREEIAGLLSETNSGEETDYTIPELPTQEDGSKTPYVLMVVG 130

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    GLKV+L A DTFR+AAIDQL++WADR     +  E+GSD 
Sbjct: 131 VNGVGKTTTIGKLAYQFKKQGLKVVLGAADTFRAAAIDQLQVWADRVDVPMIRQEMGSDP 190

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++A++A +    +  DV+IIDTAGRLHN   LM  + K+ RV++++   APH VL VLD
Sbjct: 191 ASVAFDALQSGVNQDADVIIIDTAGRLHNKVNLMNELTKVKRVMQKVVGDAPHDVLLVLD 250

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGI DL
Sbjct: 251 GSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDL 310

Query: 299 EPFVAKDF 306
           + F   +F
Sbjct: 311 QVFNKYEF 318


>gi|167909452|ref|ZP_02496543.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 112]
          Length = 345

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  L 
Sbjct: 50  SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 105

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 106 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 164

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 165 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 223

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 224 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 283

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 284 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 343

Query: 311 TG 312
            G
Sbjct: 344 LG 345


>gi|325139507|gb|EGC62047.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis CU385]
          Length = 421

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 119/297 (40%), Positives = 185/297 (62%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|167814132|ref|ZP_02445812.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 91]
          Length = 342

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  L 
Sbjct: 47  SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 102

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 103 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 161

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 162 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 220

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 221 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 280

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 281 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 340

Query: 311 TG 312
            G
Sbjct: 341 LG 342


>gi|150007588|ref|YP_001302331.1| recognition particle-docking protein FtsY [Parabacteroides
           distasonis ATCC 8503]
 gi|255013883|ref|ZP_05286009.1| recognition particle-docking protein FtsY [Bacteroides sp. 2_1_7]
 gi|256839775|ref|ZP_05545284.1| signal recognition particle-docking protein FtsY [Parabacteroides
           sp. D13]
 gi|262381913|ref|ZP_06075051.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           2_1_33B]
 gi|298375534|ref|ZP_06985491.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           3_1_19]
 gi|301310446|ref|ZP_07216385.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           20_3]
 gi|149936012|gb|ABR42709.1| recognition particle-docking protein FtsY [Parabacteroides
           distasonis ATCC 8503]
 gi|256738705|gb|EEU52030.1| signal recognition particle-docking protein FtsY [Parabacteroides
           sp. D13]
 gi|262297090|gb|EEY85020.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           2_1_33B]
 gi|298268034|gb|EFI09690.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           3_1_19]
 gi|300832020|gb|EFK62651.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           20_3]
          Length = 317

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/297 (42%), Positives = 186/297 (62%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   IT  I+ + ++DD V + LE++LI SD+GV    KI++ +  KR 
Sbjct: 15  LDKGLSKTKESVFSKITKAIAGKSKVDDDVLDNLEEVLITSDVGVDTTLKIIDRI-EKRV 73

Query: 76  AKD--VSVQRVLY----DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A+D  V+ Q +      +++ L+ +     ++ F      +P+VI+VVGVNGVGKTT IG
Sbjct: 74  ARDKYVTTQELTTLLRDEIASLLTENNTEDAEGFALPEGKKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KV L A DTFR+AA++QL IW++R     V   +GSD A++A++    A
Sbjct: 134 KLAYQFKKAGKKVYLGAADTFRAAAVEQLVIWSERVGVPIVKQNMGSDPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH +L VLD +TGQNA  Q 
Sbjct: 194 KANDADVVIIDTAGRLHNKINLMNELTKIKNVMKKVIPDAPHEILLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F A      L +TK+DGTA+GG +I I    +IPV ++G+GEG+ DL+ F  ++F
Sbjct: 254 KQFTAATEVNALAVTKLDGTAKGGVVIGISDHFRIPVKYIGLGEGMEDLQVFRKREF 310


>gi|325135260|gb|EGC57883.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis M13399]
          Length = 421

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 119/297 (40%), Positives = 185/297 (62%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|314936603|ref|ZP_07843950.1| cell division protein FtsY [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655222|gb|EFS18967.1| cell division protein FtsY [Staphylococcus hominis subsp. hominis
           C80]
          Length = 409

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 125/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G   +    +E + ++I+  R +D+   E LE++LI +D+G     ++ +EL T+ 
Sbjct: 81  KFKAGLEKSRENFQEQLNNLIARYRTVDEDFFEALEEMLITADVGFNTVMQLTDELRTEA 140

Query: 75  YAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +++     L +V      E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 141 QRRNIKETEGLREVIVEKIVEIYHQE-DDHSEAMNIE-DGRLNVILMVGVNGVGKTTTIG 198

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AI+QL++W DR   + +    GSD AA+ Y+A   A
Sbjct: 199 KLAHRYKMEGKKVMLAAGDTFRAGAIEQLQVWGDRVGVEVIRQSEGSDPAAVVYDAINAA 258

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LDATTGQNAL Q 
Sbjct: 259 KNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAVPDAPHEALLCLDATTGQNALSQA 318

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 319 RSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNPESY 375


>gi|147678072|ref|YP_001212287.1| signal recognition particle GTPase [Pelotomaculum thermopropionicum
           SI]
 gi|146274169|dbj|BAF59918.1| signal recognition particle GTPase [Pelotomaculum thermopropionicum
           SI]
          Length = 303

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 137/298 (45%), Positives = 192/298 (64%), Gaps = 3/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +  A T     E I +++  RR +D+ + EELE+LL+++D+GV  A  +VE 
Sbjct: 1   MGFFNRLKESLAKTRQSFVEKIDNLVHRRRAIDEELYEELEELLVQADVGVNTAADLVER 60

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +      + V     L ++  E I +ML   S P N+  S  P VI+VVGVNGVGKTT I
Sbjct: 61  VRRTVRERRVEEAGELKNILKEHIMEMLEGDSAPVNFS-SVPPTVIMVVGVNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G KV+L A DTFR+AAIDQL+IWA R   + +    G+D AA+A+++ + 
Sbjct: 120 GKLAYYYKSQGKKVLLGAADTFRAAAIDQLEIWAGRAGVELIKHREGADPAAVAFDSLQA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A++ D+LIIDTAGRLH  S LM  + K+ RVL R  P APH VL VLDATTGQNA+ Q
Sbjct: 180 AKARRADLLIIDTAGRLHTKSNLMEELKKVGRVLDRAMPGAPHEVLLVLDATTGQNAINQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             +F    G TG+ +TK+DG+A+GG +I I  +  IPV  +G+GEGI+DL PF A++F
Sbjct: 240 TRLFGEAVGVTGIALTKLDGSAKGGVVIAIKQSLDIPVKMIGIGEGIDDLRPFNAREF 297


>gi|291519528|emb|CBK74749.1| signal recognition particle-docking protein FtsY [Butyrivibrio
           fibrisolvens 16/4]
          Length = 312

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 128/300 (42%), Positives = 186/300 (62%), Gaps = 8/300 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + + ++L KG   T     + +  I +    +D+   EELE++LI  DIGV   + I+++
Sbjct: 8   IPFWKRLVKGLTKTRDNFIKSMDYIFNGFSNIDEDFYEELEEVLIMGDIGVRTTETILDD 67

Query: 70  L---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           L   + K + K+ +  +    ++E+  +M +  +   ++DF  +  V+LV+GVNGVGKTT
Sbjct: 68  LKEAVKKEHIKEPAECKEFL-INEIKQQMSLDET---SFDFEKKTSVVLVIGVNGVGKTT 123

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ K+   G KVM+A  DTFR+AA DQLK WADR  ADFV    GSD AA+ Y+A 
Sbjct: 124 TIGKLAGKLKANGKKVMVAGADTFRAAASDQLKEWADRAGADFVGGPEGSDPAAVVYDAV 183

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+ +DVL++DTAGRLHN   LM  + K+   + +  P A    L VLD TTGQNAL
Sbjct: 184 HAAKARGIDVLLVDTAGRLHNKKNLMNELSKINNTITKEFPEAYRETLIVLDGTTGQNAL 243

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F  V   +G+++TK+DGTA+GG  I I    K+PV ++GVGE I+DLE F A +F
Sbjct: 244 VQAKEFSEVTDISGIVLTKLDGTAKGGIAIAIQSELKLPVKYIGVGETIDDLEKFNADEF 303


>gi|254251373|ref|ZP_04944691.1| Signal recognition particle GTPase [Burkholderia dolosa AUO158]
 gi|124893982|gb|EAY67862.1| Signal recognition particle GTPase [Burkholderia dolosa AUO158]
          Length = 386

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 186/307 (60%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   + +
Sbjct: 86  ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYL 141

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +  L  K R  +    Q+V   + +L+ ++L PL K      +  P V+++ GVNG GKT
Sbjct: 142 LGALREKVRVGRLTDPQQVKSALRDLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKT 200

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ ++A
Sbjct: 201 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDA 259

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 260 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNA 319

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++
Sbjct: 320 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEE 379

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 380 FADALLG 386


>gi|319953950|ref|YP_004165217.1| signal recognition particle-docking protein ftsy [Cellulophaga
           algicola DSM 14237]
 gi|319422610|gb|ADV49719.1| signal recognition particle-docking protein FtsY [Cellulophaga
           algicola DSM 14237]
          Length = 319

 Score =  226 bits (575), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 123/273 (45%), Positives = 174/273 (63%), Gaps = 7/273 (2%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM 97
           ++DD V + LE++L+ SD+GV    KI++ +   R AKD  V    +   + E I ++L 
Sbjct: 40  KVDDDVLDNLEEVLVASDVGVNTTLKIIKGI-EARVAKDKYVGTDELNEILREEIARLLS 98

Query: 98  PLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             +   + +F+     +P+VI+VVGVNGVGKTT IGKL+ +    G KV+L AGDTFR+A
Sbjct: 99  ETNSGEDVEFTIPKDKKPYVIMVVGVNGVGKTTTIGKLAYQFKKQGYKVVLGAGDTFRAA 158

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           AIDQL+IWADR     +  ++GSD A++A++    A     DV+IIDTAGRLHN   LM 
Sbjct: 159 AIDQLQIWADRVGVPIIKQQMGSDPASVAFDTLSSAVKSDADVVIIDTAGRLHNKINLMN 218

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ RV++++ P  P+ VL VLD +TGQNA  Q + F      T L +TK+DGTA+GG
Sbjct: 219 ELSKVSRVMQKVVPDTPNDVLLVLDGSTGQNAFEQAKQFTKATNVTSLAVTKLDGTAKGG 278

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            +I I    KIPV ++GVGEGI DL+ F   +F
Sbjct: 279 VVIGISDQFKIPVRYIGVGEGIEDLQVFNKYEF 311


>gi|257095545|ref|YP_003169186.1| signal recognition particle-docking protein FtsY [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048069|gb|ACV37257.1| signal recognition particle-docking protein FtsY [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 329

 Score =  226 bits (575), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 128/301 (42%), Positives = 190/301 (63%), Gaps = 3/301 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A  + SW ++L  G A T  +    +  + S  ++DD + EELE LL+ SD+G+   Q +
Sbjct: 25  APTASSWRQRLKSGLARTRAQFGGKLKSLFSRGKVDDELLEELEALLLTSDVGLDATQHL 84

Query: 67  VEEL-LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + +L +  +  K  + + + + +SE ++++L PL +  +   SHRP +I++ GVNG GKT
Sbjct: 85  LYQLKMRAKRDKLETPEAIQHALSEALYELLRPLEEALDLS-SHRPFIIMIAGVNGAGKT 143

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     GL V+LAAGDTFR+AA +QL+ W +R +   +  + G D AA+ ++A
Sbjct: 144 TSIGKLAKHFQAHGLSVLLAAGDTFRAAAREQLQTWGERNNVTVIAQQSG-DPAAVIFDA 202

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+ +DV++ DTAGRL     LM  I K+ RV+++ DP APH  L VLDAT GQN 
Sbjct: 203 IAAAKARGIDVVLADTAGRLPTQLHLMDEIAKVRRVIQKADPTAPHETLLVLDATFGQNT 262

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L+QV  F      +GL++TK+DGTA+GG +  I      PV F+GVGEGI+DL PF A+D
Sbjct: 263 LQQVMAFDKAIQVSGLVLTKLDGTAKGGVVAAIARQCPKPVRFIGVGEGIDDLRPFSARD 322

Query: 306 F 306
           F
Sbjct: 323 F 323


>gi|91203371|emb|CAJ71024.1| strongly similar to the signal recognition particle receptor of E.
           coli [Candidatus Kuenenia stuttgartiensis]
          Length = 423

 Score =  226 bits (575), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 136/300 (45%), Positives = 185/300 (61%), Gaps = 7/300 (2%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQ 64
           +  E ++   KL KG   T  +    + D +S R+ +D+   EELED+LI +DIGV   Q
Sbjct: 115 IKKEPVAVPGKLKKGLEKTRGRFWLRLKDFLSFRQGIDESALEELEDILIGADIGVRPVQ 174

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNG 121
           K++EE+      K ++    + D    I   L      +  D  +   RP VI+VVGVNG
Sbjct: 175 KLIEEIREAWKEKAITETSQIND---FIKDRLKDGLHSWQTDIQYADKRPTVIMVVGVNG 231

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT I KL+  +   G KVMLAAGDTFR+AA+DQL IW  R  AD V  + GSD AA+
Sbjct: 232 VGKTTSIAKLASFLMKEGKKVMLAAGDTFRAAAVDQLDIWCKRIGADIVKHQTGSDPAAV 291

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A + + A+ VDVLI+DTAGRLH +  LM  + K+ RV+K+  P APH VL VLDATT
Sbjct: 292 AYDAMEASIARGVDVLIVDTAGRLHTHDNLMKELIKIKRVIKKKIPDAPHEVLLVLDATT 351

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q  MF      TG+ + K+DGTA+GG ++ +    +IPV F+G+GE  +D+E F
Sbjct: 352 GQNAISQARMFREAVDVTGIFLAKLDGTAKGGIVLGMCNETEIPVKFIGLGEQADDIERF 411


>gi|325854384|ref|ZP_08171583.1| signal recognition particle-docking protein FtsY [Prevotella
           denticola CRIS 18C-A]
 gi|325484178|gb|EGC87112.1| signal recognition particle-docking protein FtsY [Prevotella
           denticola CRIS 18C-A]
          Length = 316

 Score =  226 bits (575), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 129/292 (44%), Positives = 183/292 (62%), Gaps = 8/292 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T   +   +T  ++ + ++DD V ++LE++L+ SD+GV    KI+  +  +R 
Sbjct: 15  LDKGLEKTKQNVFSKLTRAVAGKSKVDDEVLDDLEEILVTSDVGVDTTIKIIRRI-EERV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFN--WDFSH--RPHVILVVGVNGVGKTTVIG 129
           AKD  VS   +   +   I  +L   +   N  W      RP+VILVVGVNGVGKTT IG
Sbjct: 74  AKDKYVSTSELNGILKSEITALLTENNTGSNDEWTLPENARPYVILVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KV L A DTFR+AA++Q++IW DR     V  ++G+D A++A++A + A
Sbjct: 134 KLAYQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVVKQQMGADPASVAFDALQSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +TGQNA  Q 
Sbjct: 194 KANGADVVIIDTAGRLHNKVGLMNELKKIKDVMKKVVPDAPHEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F
Sbjct: 254 RQFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLF 305


>gi|163755934|ref|ZP_02163051.1| amidase [Kordia algicida OT-1]
 gi|161324105|gb|EDP95437.1| amidase [Kordia algicida OT-1]
          Length = 318

 Score =  226 bits (575), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 127/301 (42%), Positives = 185/301 (61%), Gaps = 21/301 (6%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  KLTK  A  S              ++DD V + LE++L+ SD+GV    KI++ + 
Sbjct: 26  SFFSKLTKAVAGKS--------------KVDDEVLDNLEEVLVSSDVGVDTTLKIIDRI- 70

Query: 72  TKRYAKDV-----SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            +R AKD       + ++L + ++ L+ +        +      +P+V++VVGVNGVGKT
Sbjct: 71  EERVAKDKYLGTDELNKILREEIAALLSETNSGEDTEYTIPADKKPYVLMVVGVNGVGKT 130

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ + +  GLKV+L A DTFR+AAIDQL++WADR     V   +GSD A++A++A
Sbjct: 131 TTIGKLAHQFNKKGLKVVLGAADTFRAAAIDQLQVWADRVGVPIVKQSMGSDPASVAFDA 190

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            +   A+  DV+IIDTAGRLHN   LM  + K+ +V++++   APH VL VLD +TGQNA
Sbjct: 191 LQSGVAQDADVIIIDTAGRLHNKVNLMKELTKVKKVMQKVIGDAPHDVLLVLDGSTGQNA 250

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
             Q + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGI DL+ F   +
Sbjct: 251 FEQAKQFTAATEVTTLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYE 310

Query: 306 F 306
           F
Sbjct: 311 F 311


>gi|224827259|ref|ZP_03700353.1| signal recognition particle-docking protein FtsY [Lutiella
           nitroferrum 2002]
 gi|224600548|gb|EEG06737.1| signal recognition particle-docking protein FtsY [Lutiella
           nitroferrum 2002]
          Length = 358

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 193/310 (62%), Gaps = 15/310 (4%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + V  +  SW  +L  G + T  KL + +  +    ++D+ + +ELE +L+ +D+GV   
Sbjct: 51  EAVPPKKPSWTERLKAGLSKTRDKLGKSLAGLFGGGKIDEDLYDELETVLLTADMGVDAT 110

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILV 116
             +++++  +     VS+ R L D +EL       ++ ++ PL +P +     +P+VI++
Sbjct: 111 LHLLKDVRER-----VSL-RGLKDAAELKGALKDSLNDLIGPLEQPLDI-AGRKPYVIMM 163

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
            GVNG GKTT IGKL+K     G  V+LAAGDTFR+AA +QL  W +R +   +  + G 
Sbjct: 164 AGVNGAGKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLIAWGERNNVTVIAQQSG- 222

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D+AA+ ++A K AQA+ +D+++ DTAGRL     LM  I K+ RV+++  P APH V+ V
Sbjct: 223 DSAAVCFDAIKAAQARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPEAPHEVMLV 282

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA  GQNA+ QV++F    G TGLI+TK+DGTA+GG +  I   + +P+ F+GVGE I+
Sbjct: 283 LDANIGQNAINQVKVFDEALGLTGLILTKLDGTAKGGVIAAIAKQNPVPLRFVGVGESID 342

Query: 297 DLEPFVAKDF 306
           DL PF A+D+
Sbjct: 343 DLRPFNARDY 352


>gi|53718154|ref|YP_107140.1| putative cell division protein [Burkholderia pseudomallei K96243]
 gi|126441269|ref|YP_001057615.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 668]
 gi|254181872|ref|ZP_04888469.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1655]
 gi|52208568|emb|CAH34504.1| putative cell division protein [Burkholderia pseudomallei K96243]
 gi|126220762|gb|ABN84268.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 668]
 gi|184212410|gb|EDU09453.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1655]
          Length = 439

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  L 
Sbjct: 144 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 199

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 200 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 258

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 259 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 317

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 318 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 377

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 378 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 437

Query: 311 TG 312
            G
Sbjct: 438 LG 439


>gi|255536296|ref|YP_003096667.1| Signal recognition particle receptor protein FtsY (=alpha subunit)
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342492|gb|ACU08605.1| Signal recognition particle receptor protein FtsY (=alpha subunit)
           [Flavobacteriaceae bacterium 3519-10]
          Length = 318

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 127/310 (40%), Positives = 188/310 (60%), Gaps = 15/310 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGV 60
           +SWI+          L KG   +S    E I+  ++   ++D+ V ++LE++LI SD+G 
Sbjct: 1   MSWIKNIFKKEEKETLDKGLEKSSQGFFEKISKAVVGKSKVDEEVLDDLEEVLIASDVGA 60

Query: 61  AVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM--PLSKPFNWDFSHRPHVILV 116
           A   KI++ +   R A+D  V    +   + E I  +L+  P +   N D + +P+VI+V
Sbjct: 61  ATTIKIIQRI-EDRVARDKFVGTDELDRILREEISGLLLENPHASTGNIDETKKPYVIMV 119

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ +    G  V+L A DTFR+AA++QL IW++R     V  ++GS
Sbjct: 120 VGVNGVGKTTTIGKLANQFKSEGKSVVLGAADTFRAAAVEQLVIWSERVGVPIVKQQMGS 179

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A++  +   A   DV+IIDTAGRLHN   LM  + K+ RV++++ P APH +L V
Sbjct: 180 DPASVAFDTVQSGVANNADVVIIDTAGRLHNKVNLMNELTKIKRVMQKVIPDAPHEILLV 239

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LD +TGQNA  Q + F        L +TK+DGTA+GG +I I    +IPV ++GVGE IN
Sbjct: 240 LDGSTGQNAFEQAKHFTTATDVNALAITKLDGTAKGGVVIGISDQFQIPVKYIGVGEKIN 299

Query: 297 DLEPFVAKDF 306
           DL+ F   +F
Sbjct: 300 DLQLFNGTEF 309


>gi|134297005|ref|YP_001120740.1| signal recognition particle-docking protein FtsY [Burkholderia
           vietnamiensis G4]
 gi|134140162|gb|ABO55905.1| signal recognition particle-docking protein FtsY [Burkholderia
           vietnamiensis G4]
          Length = 377

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 186/307 (60%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   + +
Sbjct: 77  ASAKKSWLSRLKSGLAKTG----SSITSVFVNTKIDEDLYEELETALLMSDAGVDATEYL 132

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +  L  K R  +    Q+V   + +L+ ++L PL K      + +P V+++ GVNG GKT
Sbjct: 133 LGALREKVRVGRLTDPQQVKAALHDLLVELLQPLEKSLMLGRA-QPLVMMITGVNGAGKT 191

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ ++A
Sbjct: 192 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDA 250

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 251 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 310

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A +
Sbjct: 311 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAVE 370

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 371 FADALLG 377


>gi|313667376|ref|YP_004047660.1| regulatory protein PilA [Neisseria lactamica ST-640]
 gi|313004838|emb|CBN86263.1| regulatory protein PilA [Neisseria lactamica 020-06]
          Length = 502

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 183/303 (60%), Gaps = 14/303 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI  D+G+        E 
Sbjct: 201 LSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEAT-----EY 255

Query: 71  LTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           L K     VS+ + L D +EL       ++ ++ PL KP     +  P VI++ G+NG G
Sbjct: 256 LMKDVRNRVSL-KGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAG 314

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   +    G D+AA+ +
Sbjct: 315 KTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTG-DSAAVCF 373

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQ
Sbjct: 374 DAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQ 433

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ QV+ F    G TGLI+TK+DGTA+GG L  +     IPV ++GVGEGI+DL PF A
Sbjct: 434 NAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPIPVRYIGVGEGIDDLRPFDA 493

Query: 304 KDF 306
           + F
Sbjct: 494 RAF 496


>gi|134279674|ref|ZP_01766386.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 305]
 gi|134248874|gb|EBA48956.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 305]
          Length = 476

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  L 
Sbjct: 181 SWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGALR 236

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 237 EKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRA-QPLVMMIAGVNGAGKTTSIGK 295

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 296 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 354

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 355 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVK 414

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+  +
Sbjct: 415 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADAL 474

Query: 311 TG 312
            G
Sbjct: 475 LG 476


>gi|325129220|gb|EGC52060.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis OX99.30304]
          Length = 421

 Score =  225 bits (574), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RNRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|325108508|ref|YP_004269576.1| signal recognition particle-docking protein FtsY [Planctomyces
           brasiliensis DSM 5305]
 gi|324968776|gb|ADY59554.1| signal recognition particle-docking protein FtsY [Planctomyces
           brasiliensis DSM 5305]
          Length = 313

 Score =  225 bits (574), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 132/307 (42%), Positives = 181/307 (58%), Gaps = 14/307 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L KG   T+  L   + D+  +   L+D    + E  LI SD+GVA + +IVEEL  K 
Sbjct: 6   RLKKGLQKTAKVLNTDVRDLFRAGEILNDEHLAQFERRLIESDMGVAASMEIVEELRKKH 65

Query: 75  YAKDVSVQRVLYDVSELIHKMLM-----------PLSKPFNWDFSHRPHVILVVGVNGVG 123
             + V V+ +   V   +H++L            PL+ P N      P VILV GVNGVG
Sbjct: 66  RGRTVVVEEIWATVQAKLHELLQGNENVEYDTENPLA-PLNM-AEEGPTVILVAGVNGVG 123

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT I KL+  +  AG KV+LAAGDTFR+AA++QL +W+ R   D V  E GSD AA+AY
Sbjct: 124 KTTSIAKLANLLHKAGKKVVLAAGDTFRAAAVEQLTMWSQRIGCDIVTKESGSDPAAVAY 183

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
              ++A     DV+IIDTAGRL     LM  + K+ RV+ +  P  PH  L VLDATTGQ
Sbjct: 184 AGCERAVETGADVVIIDTAGRLQTQKNLMQELEKIYRVIGKKIPGGPHESLLVLDATTGQ 243

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N + Q E+F  +   TGL++ K+DGTA+GG ++ I     IPV ++GVGE I+DL+ F  
Sbjct: 244 NGIIQAEVFSGIIDATGLVLAKLDGTAKGGVVVAIRQKMGIPVKYVGVGEQIDDLQVFNP 303

Query: 304 KDFSAVI 310
           + F+A +
Sbjct: 304 EQFAAAL 310


>gi|113866393|ref|YP_724882.1| signal recognition particle receptor FtsY [Ralstonia eutropha H16]
 gi|113525169|emb|CAJ91514.1| signal recognition particle receptor FtsY [Ralstonia eutropha H16]
          Length = 386

 Score =  225 bits (574), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 127/309 (41%), Positives = 184/309 (59%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + A   L W+ +L  G + TS      I  +    ++D+ + EELE  L+ +D GV   +
Sbjct: 84  QTAEAKLGWMHRLRTGLSKTS----RNIGTLFVGVKVDEALFEELETALLMADAGVEATE 139

Query: 65  KIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++ EL  +  A+ + + + V   + EL+ ++L PL K        +P V+++ GVNG G
Sbjct: 140 YLLGELRKRVKAERIETAEGVKAALRELLTQLLRPLEKTMALG-REQPLVMMIAGVNGAG 198

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL K       KV+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ +
Sbjct: 199 KTTSIGKLCKHFQRYDQKVLLAAGDTFRAAAREQLTIWGERNNVTVVAQESG-DPAAVIF 257

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+ +D+++ DTAGRL     LM  + K+ RV+ +  P APH VL V+DA TGQ
Sbjct: 258 DAVNAAKARGIDIVMADTAGRLPTQLHLMEELKKVKRVISKAMPSAPHEVLLVIDANTGQ 317

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL+Q   F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 318 NALQQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFKA 377

Query: 304 KDFSAVITG 312
            +F+  + G
Sbjct: 378 DEFAEALLG 386


>gi|237654272|ref|YP_002890586.1| signal recognition particle-docking protein FtsY [Thauera sp. MZ1T]
 gi|237625519|gb|ACR02209.1| signal recognition particle-docking protein FtsY [Thauera sp. MZ1T]
          Length = 461

 Score =  225 bits (574), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 131/300 (43%), Positives = 187/300 (62%), Gaps = 11/300 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  +L  G A T  ++  G+  +   R++D+ + EELE  L+ +D GV   Q ++++L 
Sbjct: 148 SWTERLKAGLARTRNQIGGGLASLFGLRKIDEDLLEELESTLLMADCGVDATQHLIDDL- 206

Query: 72  TKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +R+ +D       +Q+ L D    +H+++ PL  P      HRP +I++ GVNG GKTT
Sbjct: 207 RRRWKRDRLETADQLQKALADG---LHEIIAPLEAPLEV-AGHRPFIIMIAGVNGSGKTT 262

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K     G  V+LAAGDTFR+AA +QL  W +R +   V  + G DAAA+ ++A 
Sbjct: 263 SIGKLAKYFQAHGKSVLLAAGDTFRAAAREQLMTWGERNNVTVVAQDSG-DAAAVIFDAI 321

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+K+DV++ DTAGRL     LM  I K+ RV+ + DP  PH VL VLDA  GQNAL
Sbjct: 322 NAARARKIDVVLADTAGRLPTQLHLMEEIAKVRRVIAKADPSGPHEVLLVLDANIGQNAL 381

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QV+ F    G TGL++TK+DGTA+GG L  I      P+ F+GVGEGI+DL+PF A++F
Sbjct: 382 AQVKAFDKAIGVTGLVVTKLDGTAKGGVLAAIARQCPKPLRFIGVGEGIDDLQPFKAREF 441


>gi|167040352|ref|YP_001663337.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter sp. X514]
 gi|300914436|ref|ZP_07131752.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter sp. X561]
 gi|307724328|ref|YP_003904079.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter sp. X513]
 gi|166854592|gb|ABY93001.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter sp. X514]
 gi|300889371|gb|EFK84517.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter sp. X561]
 gi|307581389|gb|ADN54788.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter sp. X513]
          Length = 319

 Score =  225 bits (574), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 131/314 (41%), Positives = 198/314 (63%), Gaps = 17/314 (5%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVA 63
           + A E   + +K+ +G   T   L   I  I++  R++D+ + EELE++LI +DIG++  
Sbjct: 13  ETAEEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGISTT 72

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILV 116
            KI+E +  K      + +R +YD S++       ++++L    +PF       P VIL 
Sbjct: 73  SKIIEGIRQK------AKERKIYDASQIKELLAEEVYEILQKDVEPFTL---TSPMVILN 123

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+      G KVMLAAGDTFR+AAIDQL+IWA+R +   +  + GS
Sbjct: 124 VGVNGVGKTTTIGKLAYLYKKEGKKVMLAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGS 183

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++ ++  + ++A+ +D+LI DTAGRLHN   LM  + K+ +V+ R  P A      V
Sbjct: 184 DPASVIFDGIQASKARGIDILICDTAGRLHNKKNLMEELRKIRKVIDREYPEARVETFLV 243

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL+Q ++F  V+  TG+++TK+DGTA+GG ++ I     +P+ ++G+GEGI 
Sbjct: 244 LDATTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGIGEGIE 303

Query: 297 DLEPFVAKDFSAVI 310
           DL+ F AK F + I
Sbjct: 304 DLQAFDAKSFVSAI 317


>gi|255065474|ref|ZP_05317329.1| signal recognition particle-docking protein FtsY [Neisseria sicca
           ATCC 29256]
 gi|255050299|gb|EET45763.1| signal recognition particle-docking protein FtsY [Neisseria sicca
           ATCC 29256]
          Length = 480

 Score =  225 bits (574), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 183/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 179 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 238

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 239 RNRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPDTKEPFVIMLAGINGAGKTTSIG 298

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   +    G D+AA+ ++A + A
Sbjct: 299 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTG-DSAAVCFDAVQAA 357

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 358 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 417

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 418 KAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 474


>gi|326389505|ref|ZP_08211072.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994510|gb|EGD52935.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 318

 Score =  225 bits (574), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 130/311 (41%), Positives = 198/311 (63%), Gaps = 17/311 (5%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           +E   + +K+ +G   T   L   I  I++  R++D+ + EELE++LI +DIG++   KI
Sbjct: 15  AEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGISTTSKI 74

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +E +  K      + +R +YD S++       ++++L    +PF       P VIL VGV
Sbjct: 75  IEGIRQK------AKERKIYDASQIKELLAEEVYEILQKDVEPFTL---TSPMVILNVGV 125

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+      G KVMLAAGDTFR+AAIDQL+IWA+R +   +  + GSD A
Sbjct: 126 NGVGKTTTIGKLAYLYKKEGKKVMLAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGSDPA 185

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  + ++A+++D+LI DTAGRLHN   LM  + K+ +V+ R  P A      VLDA
Sbjct: 186 SVIFDGIQASKAREIDILICDTAGRLHNKKNLMEELRKIRKVIDREYPEARVETFLVLDA 245

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL+Q ++F  V+  TG+++TK+DGTA+GG ++ I     +P+ ++G+GEGI DL+
Sbjct: 246 TTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGIGEGIEDLQ 305

Query: 300 PFVAKDFSAVI 310
            F AK F + I
Sbjct: 306 AFDAKSFVSAI 316


>gi|254469043|ref|ZP_05082449.1| signal recognition particle-docking protein FtsY [beta
           proteobacterium KB13]
 gi|207087853|gb|EDZ65136.1| signal recognition particle-docking protein FtsY [beta
           proteobacterium KB13]
          Length = 384

 Score =  225 bits (574), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 122/302 (40%), Positives = 190/302 (62%), Gaps = 7/302 (2%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E LS+  K+ +G   T   +   ++ +  ++ +D    +ELE  LI +D+G A  Q+I+ 
Sbjct: 82  EKLSFSEKIKQGLKKTRDAISGNLSALSFTKNIDQEFYDELEMTLIAADVGYAATQQIIS 141

Query: 69  EL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           EL   + K   +D +  + L  + +++ ++L  + KP        P VILVVGVNG GKT
Sbjct: 142 ELKDRVKKEKLEDGAQLKSL--LKKILSELLQHIEKPL-IHIETTPFVILVVGVNGAGKT 198

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K + D G  V++AAGDTFR+AA +QL++W DR +   +  + G D +A+ ++A
Sbjct: 199 TTIGKLTKLLLDEGKSVLIAAGDTFRAAAKEQLQVWGDRNNVTVISQDTG-DPSAVIFDA 257

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+AK +D++I DTAGRL     L+  + K+ +V+K+ D  APH  + VLDA TGQNA
Sbjct: 258 MQSAKAKAIDIVIADTAGRLPTQKHLIDELAKIKKVIKKFDETAPHETILVLDANTGQNA 317

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q+++F+     TGLIMTK+DGTA+GG +  I     IP+ F+GVGE I+DL+ F A+D
Sbjct: 318 INQIKVFNEAVSLTGLIMTKLDGTAKGGIVAAIAKEQPIPLRFIGVGEKIDDLKIFSAED 377

Query: 306 FS 307
           ++
Sbjct: 378 YA 379


>gi|116690829|ref|YP_836452.1| signal recognition particle-docking protein FtsY [Burkholderia
           cenocepacia HI2424]
 gi|116648918|gb|ABK09559.1| signal recognition particle-docking protein FtsY [Burkholderia
           cenocepacia HI2424]
          Length = 388

 Score =  225 bits (573), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 186/307 (60%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   + +
Sbjct: 88  ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYL 143

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++ L  K R  +    Q+V   + +L+ ++L PL K      +  P V+++ GVNG GKT
Sbjct: 144 LDALREKVRAGRLTDPQQVKDALHDLLVELLTPLEKSLMLGRAQ-PLVMMIAGVNGAGKT 202

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ ++A
Sbjct: 203 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDA 261

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 262 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 321

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A +
Sbjct: 322 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVE 381

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 382 FADALLG 388


>gi|170734154|ref|YP_001766101.1| signal recognition particle-docking protein FtsY [Burkholderia
           cenocepacia MC0-3]
 gi|169817396|gb|ACA91979.1| signal recognition particle-docking protein FtsY [Burkholderia
           cenocepacia MC0-3]
          Length = 388

 Score =  225 bits (573), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 187/307 (60%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   + +
Sbjct: 88  ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYL 143

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++ L  K R  +    Q+V   + +L+ ++L PL K      + +P V+++ GVNG GKT
Sbjct: 144 LDALREKVRAGRLTDPQQVKDALHDLLVELLTPLEKSLMLGRA-QPLVMMITGVNGAGKT 202

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ ++A
Sbjct: 203 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDA 261

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 262 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 321

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A +
Sbjct: 322 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVE 381

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 382 FADALLG 388


>gi|91204843|ref|YP_537198.1| Signal recognition particle-docking protein FtsY [Rickettsia bellii
           RML369-C]
 gi|157826414|ref|YP_001495478.1| Signal recognition particle-docking protein FtsY [Rickettsia bellii
           OSU 85-389]
 gi|122426142|sp|Q1RKK5|FTSY_RICBR RecName: Full=Cell division protein ftsY homolog
 gi|91068387|gb|ABE04109.1| Signal recognition particle-docking protein FtsY [Rickettsia bellii
           RML369-C]
 gi|157801718|gb|ABV78441.1| Signal recognition particle-docking protein FtsY [Rickettsia bellii
           OSU 85-389]
          Length = 303

 Score =  225 bits (573), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 127/303 (41%), Positives = 191/303 (63%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +G + TS K+  GI  I   ++LD    EELE+LLI +D+G  VA KI+E+ 
Sbjct: 2   ISIFSKLKQGLSKTSGKISAGIDKIFYKKKLDAETLEELEELLISTDMGSLVAAKIIEDF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + ++ K+V    +   ++ LI + L+    PF  +  ++ +V+LV GVNG GKTT IGK
Sbjct: 62  KSLKFDKEVETTEIKETLANLIEQQLLESEIPFTLN-ENKLNVVLVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G KV +AA DTFR+AA++QL  W  R  A  +  E  +D A++AY A +++ 
Sbjct: 121 LAAMYGMQGKKVAVAACDTFRAAAVNQLDSWVTRAKALLITGEEAADPASVAYRAVEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
            + +D+L IDTAGRLHN   LM  + K+++V+K++D + P HSVL V+DA TGQN   QV
Sbjct: 181 KQDIDILFIDTAGRLHNKKNLMDELTKIVKVIKKVDENLPTHSVL-VIDAITGQNTYNQV 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  
Sbjct: 240 EHFNDATNLTGLIVTKLDGSAKAGVIVGVVQRFNLPIYFIGIGEQIEDLKIFNRHDFAKS 299

Query: 310 ITG 312
           + G
Sbjct: 300 LVG 302


>gi|107023742|ref|YP_622069.1| signal recognition particle-docking protein FtsY [Burkholderia
           cenocepacia AU 1054]
 gi|105893931|gb|ABF77096.1| signal recognition particle-docking protein FtsY [Burkholderia
           cenocepacia AU 1054]
          Length = 327

 Score =  225 bits (573), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 187/307 (60%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   + +
Sbjct: 27  ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYL 82

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++ L  K R  +    Q+V   + +L+ ++L PL K      + +P V+++ GVNG GKT
Sbjct: 83  LDALREKVRAGRLTDPQQVKDALHDLLVELLTPLEKSLMLGRA-QPLVMMIAGVNGAGKT 141

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ ++A
Sbjct: 142 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDA 200

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 201 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 260

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A +
Sbjct: 261 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVE 320

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 321 FADALLG 327


>gi|71082964|ref|YP_265683.1| cell division particle [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762612|ref|ZP_01264577.1| cell division particle [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062077|gb|AAZ21080.1| cell division particle [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718414|gb|EAS85064.1| cell division particle [Candidatus Pelagibacter ubique HTCC1002]
          Length = 305

 Score =  225 bits (573), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 120/300 (40%), Positives = 189/300 (63%), Gaps = 7/300 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           K   GF  ++     G+ DII  + +DD   +++E+ LI+SD+G+  A++I + +  ++ 
Sbjct: 6   KFKIGFKKSASTFTSGLRDIIVKKEIDDKTLDQIEEYLIQSDVGLVAAEEIKKIIAQEKI 65

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPF-NWDFSHRP---HVILVVGVNGVGKTTVIGKL 131
                 + ++++V+ ++   ++ L KP  N +F ++    + +LV GVNGVGKTT IGK+
Sbjct: 66  DPK---KDIMHEVNLILRNYIVTLMKPLENENFFNKKEKLNAVLVSGVNGVGKTTTIGKV 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            K +   G KVM +A DTFR+AAI+QL+ WA++       S  GSD A++AY+A ++A  
Sbjct: 123 GKILKSNGNKVMFSACDTFRAAAIEQLESWANKIDVQITKSTQGSDPASVAYKAIEEALK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              + ++IDTAGRL N   LM    K+  V K++DP APH V+ VLDAT+GQN + QVE 
Sbjct: 183 NDFNHVLIDTAGRLQNKKNLMEEYKKIAHVTKKIDPDAPHDVILVLDATSGQNVISQVEE 242

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ +   TGLIMTK+DGTA+GG L+ +   +K+P+  LG+GE  +DL+ F A+ F+   T
Sbjct: 243 FNKIIPLTGLIMTKLDGTAKGGILLALAKKYKLPIIALGLGEKEDDLQIFNAEKFAEAFT 302


>gi|301062995|ref|ZP_07203560.1| signal recognition particle-docking protein FtsY [delta
           proteobacterium NaphS2]
 gi|300442876|gb|EFK07076.1| signal recognition particle-docking protein FtsY [delta
           proteobacterium NaphS2]
          Length = 353

 Score =  225 bits (573), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 190/311 (61%), Gaps = 6/311 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
            KV +      ++L  G   T       I ++ + ++ + + + +ELE++L  SDIGVA 
Sbjct: 42  NKVDNNEEGVFKRLRHGLTKTRSSFTGRIDNLFAGKKEITESLMDELEEILFTSDIGVAT 101

Query: 63  AQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            Q++++   E +T++  +D   Q++   + + I  +L   S       +  P VI+V GV
Sbjct: 102 TQRLLDAARENVTRKALRDP--QKLKAILRDHIFSLLNQDSVEHTPSNAEGPLVIMVAGV 159

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGK++ +    G  VML A DTFR+AA++QL IW +R  A  V  + G+D +
Sbjct: 160 NGVGKTTSIGKIANRFRREGKTVMLVAADTFRAAAVEQLTIWGERVGATVVKQDTGADPS 219

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A++A   A ++K+DV+++DTAGRLH  + LMA + K+ RV+ R  P APH V  VLDA
Sbjct: 220 AVAFDAMTAAISRKIDVVLVDTAGRLHTQTNLMAELRKVNRVIGRKLPGAPHEVWLVLDA 279

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q E F    G TG+I+TK+DGTA+GG +I I    +IP+ F+G+GE ++DL 
Sbjct: 280 TTGQNAISQAEAFQKALGLTGIILTKLDGTAKGGVVIGISSEFQIPIRFIGIGEQVDDLR 339

Query: 300 PFVAKDFSAVI 310
           PF   +F   I
Sbjct: 340 PFDPGEFVRAI 350


>gi|225076774|ref|ZP_03719973.1| hypothetical protein NEIFLAOT_01825 [Neisseria flavescens
           NRL30031/H210]
 gi|224951872|gb|EEG33081.1| hypothetical protein NEIFLAOT_01825 [Neisseria flavescens
           NRL30031/H210]
          Length = 419

 Score =  225 bits (573), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 183/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI  D+G+   + +++++
Sbjct: 118 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEATEYLMKDV 177

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 178 RNRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 237

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 238 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 296

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 297 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 356

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF AK F
Sbjct: 357 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRSVPVRYIGVGEGIDDLRPFNAKAF 413


>gi|326335726|ref|ZP_08201912.1| cell division protein FtsY [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692155|gb|EGD34108.1| cell division protein FtsY [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 317

 Score =  225 bits (573), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 120/277 (43%), Positives = 171/277 (61%), Gaps = 5/277 (1%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIH 93
           I    ++DD + +ELE +L+ SD+GV    KI++ +  + Y  K +    +   + E I 
Sbjct: 35  IAGKSKVDDTILDELEGILVSSDVGVDTTLKIIDRIEKRVYQEKYLGTNELNKILREEIA 94

Query: 94  KMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            +L    +    DFS     +P+VI+VVGVNG GKTT IGKL+ ++   GL ++L A DT
Sbjct: 95  ALLSETQRGEEVDFSIPTGKKPYVIMVVGVNGAGKTTTIGKLAYQLKKKGLNIVLGAADT 154

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAIDQL++WADR     V  + GSD A++AY+    A ++  DV+IIDTAGRLHN  
Sbjct: 155 FRAAAIDQLQVWADRVGVPLVKQQTGSDPASVAYDTLSSALSQNADVVIIDTAGRLHNKV 214

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + K+ RV+++L P+ P  VL VLD +TGQNA  Q + F        L +TK+DGT
Sbjct: 215 NLMNELSKVKRVMQKLLPNTPDEVLLVLDGSTGQNAFEQAKQFTLATEVNALAITKLDGT 274

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A+GG +I I    +IPV ++GVGEGI DL+ F   +F
Sbjct: 275 AKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEF 311


>gi|317153561|ref|YP_004121609.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943812|gb|ADU62863.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 457

 Score =  225 bits (573), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 122/297 (41%), Positives = 190/297 (63%), Gaps = 5/297 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL+ G A T  ++ + I  ++S+   L+D   +E E++LI +D+G+  A ++++ L  K 
Sbjct: 162 KLSDGIAKTREQITKRIDGLLSAHSSLNDDFWDEFEEILIMADVGMEAAGQLMDNL--KA 219

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            A+         D  E++ + L  + + P   +  + P V+++VGVNGVGKTT I KL+ 
Sbjct: 220 RARKAGTDDP-EDFKEILRQELEEIFRLPPRIEAVNPPEVLMMVGVNGVGKTTTIAKLAY 278

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +    G KV++AAGDTFR+AAI+QL++WA R  A F     GSD AA+AYEA  +A ++ 
Sbjct: 279 RAQLQGRKVLIAAGDTFRAAAIEQLEVWAGRIGAGFFAKAEGSDPAAVAYEAMDKAVSEG 338

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+L++DTAGRLH    LM  + K+ RVL +  P APH  + V+DATTGQNAL Q ++F+
Sbjct: 339 YDLLLLDTAGRLHTKVNLMEELKKVQRVLGKKHPGAPHRCILVIDATTGQNALAQTKLFN 398

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
              G   +I+TK+DGTA+GG ++ + + +K+P+ F+G+GE + DL PF  KDF+  +
Sbjct: 399 EAVGLDEIILTKLDGTAKGGVVVAVTLQNKLPITFVGLGEKMEDLRPFNGKDFAKAL 455


>gi|237749579|ref|ZP_04580059.1| signal recognition particle receptor [Oxalobacter formigenes
           OXCC13]
 gi|229380941|gb|EEO31032.1| signal recognition particle receptor [Oxalobacter formigenes
           OXCC13]
          Length = 351

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 123/300 (41%), Positives = 182/300 (60%), Gaps = 8/300 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L  G A TS  L     +I     +D+ + EELE  L+ SD+G+   + +++EL 
Sbjct: 57  SWLSRLKSGLAKTSANL-----NIFGGTTIDEELFEELETALLVSDVGMPATEYLLDEL- 110

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130
            ++  ++   Q      +       +      N +   H P VI++ GVNG GKTT IGK
Sbjct: 111 RRKVKEEKLTQPSEIKTALAALLTDLLAPLQKNLEIGRHNPLVIMMAGVNGAGKTTTIGK 170

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ + +    V+LAAGDTFR+AA +QL +W DR     +  E G D AA+A++A + A+
Sbjct: 171 LAQHLQNNDQTVLLAAGDTFRAAAREQLAVWGDRNKITVIAQESG-DPAAVAFDAVQSAK 229

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK ++V+++DTAGRL   S LM  + K+ RV+ +    APH ++ V+D  TGQNAL QV+
Sbjct: 230 AKNINVVMVDTAGRLPTQSHLMEELKKVKRVIGKGMDEAPHEIILVIDGNTGQNALAQVK 289

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGT +GG L  I   H +PVYF+GVGE I+DL+PFVA++FS  +
Sbjct: 290 AFDETLGLTGLIVTKLDGTPKGGILAAIAKNHPVPVYFIGVGEKIDDLQPFVAEEFSNAL 349


>gi|261379167|ref|ZP_05983740.1| signal recognition particle-docking protein FtsY [Neisseria cinerea
           ATCC 14685]
 gi|269144353|gb|EEZ70771.1| signal recognition particle-docking protein FtsY [Neisseria cinerea
           ATCC 14685]
          Length = 347

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 121/303 (39%), Positives = 187/303 (61%), Gaps = 14/303 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 46  LSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 105

Query: 71  LTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
                 +D    + L D +EL       ++ ++ PL KP     +  P VI++ G+NG G
Sbjct: 106 ------RDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAG 159

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ +
Sbjct: 160 KTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCF 218

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQ
Sbjct: 219 DAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQ 278

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A
Sbjct: 279 NAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDA 338

Query: 304 KDF 306
           + F
Sbjct: 339 RAF 341


>gi|261401832|ref|ZP_05987957.1| signal recognition particle-docking protein FtsY [Neisseria
           lactamica ATCC 23970]
 gi|269208010|gb|EEZ74465.1| signal recognition particle-docking protein FtsY [Neisseria
           lactamica ATCC 23970]
          Length = 409

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 119/297 (40%), Positives = 184/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI  D+G+   + +++++
Sbjct: 108 LSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEATEYLMKDV 167

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 168 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 227

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 228 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCFDAVQAA 286

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 287 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 346

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     IPV ++GVGEGI+DL PF A+ F
Sbjct: 347 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPIPVRYIGVGEGIDDLRPFDARAF 403


>gi|218767303|ref|YP_002341815.1| probable signal recognition particle protein [Neisseria
           meningitidis Z2491]
 gi|9910688|sp|P57010|FTSY_NEIMA RecName: Full=Cell division protein ftsY homolog
 gi|121051311|emb|CAM07596.1| probable signal recognition particle protein [Neisseria
           meningitidis Z2491]
          Length = 421

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|254247170|ref|ZP_04940491.1| Signal recognition particle GTPase [Burkholderia cenocepacia PC184]
 gi|124871946|gb|EAY63662.1| Signal recognition particle GTPase [Burkholderia cenocepacia PC184]
          Length = 413

 Score =  224 bits (572), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 186/307 (60%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   + +
Sbjct: 113 ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYL 168

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++ L  K R  +    Q+V   + +L+ ++L PL K      +  P V+++ GVNG GKT
Sbjct: 169 LDALREKVRAGRLTDPQQVKDALHDLLVELLTPLEKSLMLGRAQ-PLVMMITGVNGAGKT 227

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ ++A
Sbjct: 228 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDA 286

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 287 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 346

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A +
Sbjct: 347 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVE 406

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 407 FADALLG 413


>gi|167753009|ref|ZP_02425136.1| hypothetical protein ALIPUT_01273 [Alistipes putredinis DSM 17216]
 gi|167659323|gb|EDS03453.1| hypothetical protein ALIPUT_01273 [Alistipes putredinis DSM 17216]
          Length = 365

 Score =  224 bits (572), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 125/305 (40%), Positives = 186/305 (60%), Gaps = 8/305 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73
           +L  G   T   L   +   ++ R  +D  V ++LE++LI SD+GV    KI+E +  + 
Sbjct: 59  ELNSGLEKTKTGLFSKLARAVAGRSTIDTQVLDDLEEVLITSDVGVETTVKIIERIEARV 118

Query: 74  ---RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVI 128
              +Y     +Q +L D +++L+ +     ++ F  D     P+VI+VVGVNG GKTT I
Sbjct: 119 ARDKYMNTSELQSILRDEIAQLMEESHRS-TENFGLDVEEGVPYVIMVVGVNGAGKTTTI 177

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +++ AGL V + A DTFR+AAIDQL +WA+R  A  +  E+GSD A++A++  K 
Sbjct: 178 GKLAAQLTRAGLNVYIGAADTFRAAAIDQLAVWAERAGATMIRQEMGSDPASVAFDTLKS 237

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A A K DV++IDTAGRLHN   LM  + K+  V+ ++ P+AP  V+ VLD +TGQNA  Q
Sbjct: 238 AVANKADVVLIDTAGRLHNKVGLMNELTKIRNVMGKVIPNAPQEVMLVLDGSTGQNAFEQ 297

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F      T L +TK+DGTA+GG +I I    +IPV ++G+GEGI+ L+ F  K+F  
Sbjct: 298 ARQFTQATQVTSLTITKLDGTAKGGVVIGISDQFRIPVRYIGIGEGIDQLKMFDRKEFVN 357

Query: 309 VITGC 313
            + G 
Sbjct: 358 ALFGS 362


>gi|161869063|ref|YP_001598229.1| signal recognition particle protein [Neisseria meningitidis 053442]
 gi|161594616|gb|ABX72276.1| signal recognition particle protein [Neisseria meningitidis 053442]
          Length = 421

 Score =  224 bits (572), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|329122028|ref|ZP_08250637.1| cell division protein FtsY [Dialister micraerophilus DSM 19965]
 gi|327467080|gb|EGF12592.1| cell division protein FtsY [Dialister micraerophilus DSM 19965]
          Length = 313

 Score =  224 bits (572), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 125/298 (41%), Positives = 193/298 (64%), Gaps = 5/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S+  ++ KG   T   L + I  I I    +D+   ++LE +L+  D+GV     ++ +
Sbjct: 1   MSFFDRIKKGLEKTKKGLIQNIESIVIGYAHIDEEFLDDLEMILVSGDLGVRTTDYLMRQ 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHK-MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  +R  K+ ++     +V   I K M+  L++    + +H P V L+VGVNGVGKTT I
Sbjct: 61  I--RRGVKEGNISNT-SEVMPFIEKTMIELLTENDEKEENHVPEVYLIVGVNGVGKTTTI 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +MS AG KV+LAAGDT+R+AA +QL IWA+RT +D V    G+D AA+A++A   
Sbjct: 118 GKLAYQMSKAGKKVLLAAGDTYRAAASEQLTIWAERTGSDIVKHAEGADPAAVAFDALTA 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV+++DTAGR+   + LM  +GK+ +V+K++ P APH  L VLDATTGQNA+ Q
Sbjct: 178 AKARNIDVVLVDTAGRIQTKTNLMNELGKINKVMKKVIPDAPHQTLLVLDATTGQNAVSQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F  V   TG+++TK+DGTA+GG ++ I    K+PV ++G+GE  +DL+ F A  F
Sbjct: 238 AKHFKEVVDITGIVLTKLDGTAKGGVVLSIHEELKVPVKWIGLGEREDDLQKFDASVF 295


>gi|238028676|ref|YP_002912907.1| Signal recognition particle-docking protein FtsY [Burkholderia
           glumae BGR1]
 gi|237877870|gb|ACR30203.1| Signal recognition particle-docking protein FtsY [Burkholderia
           glumae BGR1]
          Length = 389

 Score =  224 bits (572), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 132/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G + TS  L    T++  + R+DD + EELE  L+ SD G+   + ++  L 
Sbjct: 94  SWIARLRSGLSKTSTSL----TNVFVNTRIDDELYEELEAALLMSDAGIDATEYLLGALR 149

Query: 72  TKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K  A+ +S   +V   +  L+  +L PL K      +  P V+++ GVNG GKTT IGK
Sbjct: 150 EKVRAERLSDPLQVKAALRALLVDLLAPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 208

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 209 LAKHLQRFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVGAAR 267

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 268 ARKIDVVMADTAGRLPTQLHLMEELRKVKRVIGKAQSDAPHEVLLVIDANTGQNALAQVK 327

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++F+  +
Sbjct: 328 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFNAEEFADAL 387

Query: 311 TG 312
            G
Sbjct: 388 LG 389


>gi|254449085|ref|ZP_05062537.1| signal recognition particle-docking protein FtsY [gamma
           proteobacterium HTCC5015]
 gi|198261277|gb|EDY85570.1| signal recognition particle-docking protein FtsY [gamma
           proteobacterium HTCC5015]
          Length = 325

 Score =  224 bits (572), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 130/309 (42%), Positives = 185/309 (59%), Gaps = 8/309 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVA 61
           N+ +  E       L +G   T   L   I D++ S+R++DD V EE+E  L+ +D+GV 
Sbjct: 7   NEALQDEQQDQTSGLMRGLRKTRDILTADIRDLVASTRQIDDDVMEEIETRLLMADVGVE 66

Query: 62  VAQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
             + +++ +   +      DV S+ R L D  EL+ K L   +     D  HRP  IL+V
Sbjct: 67  TTRSVIDAVNRGIEVGQVSDVTSLIRALRD--ELVAK-LTRYTHRLEIDSKHRPTSILMV 123

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNG GKTT  GKL+K+    G  VMLAAGDTFR+AA++QL+ W  R   + +    G+D
Sbjct: 124 GVNGAGKTTTTGKLAKRFQRQGYGVMLAAGDTFRAAAVEQLEEWGRRNHVEVLGQGTGAD 183

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           +A+++++A   A+A+  DVLI DTAGRLH    LM  + K+ RV+K++D  AP   L V+
Sbjct: 184 SASVSFDALSAAKARGTDVLIADTAGRLHTQGGLMDELTKIKRVMKKVDESAPTETLLVV 243

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DAT GQNAL Q   FH     TGLI+TK+DGTA+GG +  I     +P+ F+GVGE I+D
Sbjct: 244 DATQGQNALNQAREFHRAIDLTGLIVTKLDGTAKGGIIFAISHELGLPIRFIGVGESIDD 303

Query: 298 LEPFVAKDF 306
           L+ F  K+F
Sbjct: 304 LKEFKPKEF 312


>gi|325129203|gb|EGC52048.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis N1568]
          Length = 421

 Score =  224 bits (572), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|308388268|gb|ADO30588.1| probable signal recognition particle protein [Neisseria
           meningitidis alpha710]
 gi|319409567|emb|CBY89858.1| cell division protein FtsY [Neisseria meningitidis WUE 2594]
 gi|325133204|gb|EGC55874.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis M6190]
          Length = 421

 Score =  224 bits (572), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|297183609|gb|ADI19736.1| hypothetical protein [uncultured bacterium EB000_36F02]
          Length = 305

 Score =  224 bits (572), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 120/297 (40%), Positives = 185/297 (62%), Gaps = 7/297 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            K   GF  ++     G+ DII+ + +DD    ++ED LI SD+GV  A  I + +  ++
Sbjct: 5   EKFKLGFKKSASTFTSGLKDIITKKEIDDKTLSKVEDYLIYSDVGVEAATDIKDIIAQEK 64

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPF-NWDFSH---RPHVILVVGVNGVGKTTVIGK 130
              +   + ++ +++ ++   ++ L KP  N +F +   + +V+L+ GVNGVGKTT IGK
Sbjct: 65  INPN---KNIMEEINVILKNYIVSLMKPLENENFFYNKEKLNVVLISGVNGVGKTTTIGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + K +   G KVM +A DTFR+AAI+QL+ WA +     V S  GSD A++AY+A +QA 
Sbjct: 122 IGKILKSNGNKVMFSACDTFRAAAIEQLENWATKIDVQIVKSTQGSDPASVAYKAVEQAI 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               + ++IDTAGRL N   LM    K+  V K++DP APH V+ +LDAT+GQN + QVE
Sbjct: 182 QNNFNHVLIDTAGRLQNKKNLMDEYKKIAHVTKKIDPDAPHDVILILDATSGQNVINQVE 241

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            F+ +   TGLIMTK+D TA+GG LI +   +K+P+  +G+GE  +DL+ F A+ F+
Sbjct: 242 EFNKIIPITGLIMTKLDSTAKGGILIALARKYKLPIIAVGLGEKEDDLQIFSAEKFA 298


>gi|88608763|ref|YP_506428.1| signal recognition particle-docking protein FtsY [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600932|gb|ABD46400.1| signal recognition particle-docking protein FtsY [Neorickettsia
           sennetsu str. Miyayama]
          Length = 309

 Score =  224 bits (572), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 121/280 (43%), Positives = 177/280 (63%), Gaps = 2/280 (0%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  GI +I +  ++ +   E+LE+LLI +DIG  V ++I++ +   +     S+++V   
Sbjct: 20  LSSGIDNIFAKEKISESTIEQLEELLISADIGPTVTERIIKTVKKIKVKDGESLEQVKSI 79

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             E + K+L P SK   +  +  P VI+  GVNG GKTT IGKL+ K       VM+AA 
Sbjct: 80  TREEMKKVLDPTSKKLIFPQTG-PQVIVFCGVNGNGKTTTIGKLAYKFIQENKTVMIAAC 138

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D FR+AAI+QL+ WA+R SA F  SE   +A+  AY+A ++A   KVDVLI+DT+GRLH 
Sbjct: 139 DLFRAAAIEQLRFWAERASATFFSSETSKNASGTAYKALEKALEDKVDVLIVDTSGRLHT 198

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + K+ RVL +L P AP+ V+  LDA+TGQNAL QV++F      TGL++TK+D
Sbjct: 199 QNDLMEELKKICRVLSKLMPSAPNEVILALDASTGQNALNQVQVFKDAVNLTGLVVTKLD 258

Query: 268 GTARGGGLIPIVVTH-KIPVYFLGVGEGINDLEPFVAKDF 306
           GT++GG ++ I   +  + +YF+G GE I DLE F   +F
Sbjct: 259 GTSKGGVIVAIAERYPNLGIYFVGTGEKITDLEEFSPSEF 298


>gi|304388845|ref|ZP_07370899.1| cell division protein FtsY [Neisseria meningitidis ATCC 13091]
 gi|304337211|gb|EFM03391.1| cell division protein FtsY [Neisseria meningitidis ATCC 13091]
 gi|325137247|gb|EGC59841.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis M0579]
 gi|325143381|gb|EGC65711.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis 961-5945]
 gi|325201235|gb|ADY96689.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis M01-240149]
 gi|325205143|gb|ADZ00596.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis M04-240196]
          Length = 421

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|160947508|ref|ZP_02094675.1| hypothetical protein PEPMIC_01442 [Parvimonas micra ATCC 33270]
 gi|158446642|gb|EDP23637.1| hypothetical protein PEPMIC_01442 [Parvimonas micra ATCC 33270]
          Length = 326

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 187/304 (61%), Gaps = 7/304 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S+  +L KG  +T   L   I +++S S ++D+ + EELE +L+ +DIG  V  +++++L
Sbjct: 23  SFFERLKKGLVNTRNNLSSKIDNLLSMSTKIDEELFEELEYILVSADIGANVTMELIDDL 82

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPL-SKPFNWDFS---HRPHVILVVGVNGVGKTT 126
                 + ++   ++ D  +LI  M   L SK  N DF+     P +ILVVGVNGVGKTT
Sbjct: 83  KEIVKKEKITEPSLIKD--KLIELMNSKLASKELNHDFNIIDGIPTIILVVGVNGVGKTT 140

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ K    G  VML A DTFR+AA +QL  WA+R+    + +E G+D A++ Y+  
Sbjct: 141 SIGKLANKFKSKGKNVMLVAADTFRAAATEQLTEWANRSGVPIISNEEGADPASVVYDGI 200

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A++K +DVLI DTAGRLHN   LM  + K+ RV+ R  P A   V  VLDATTGQNA+
Sbjct: 201 QSAKSKNIDVLICDTAGRLHNKKNLMNELNKIARVIDREYPEANKEVTLVLDATTGQNAI 260

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F   A    +I+TK+DGTA+GG +  I +  +IPV  +G+GE I+DL+ +  +DF
Sbjct: 261 VQAKEFRDTANIDSVILTKLDGTAKGGVVFTIQLEMEIPVKQIGIGEQIDDLQDYNDEDF 320

Query: 307 SAVI 310
              I
Sbjct: 321 VNAI 324


>gi|325290418|ref|YP_004266599.1| signal recognition particle-docking protein FtsY [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965819|gb|ADY56598.1| signal recognition particle-docking protein FtsY [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 309

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/261 (44%), Positives = 171/261 (65%), Gaps = 3/261 (1%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-P 111
           LI+SD+G++ + ++VE L  K   + ++   +L +V  L   ++  L +      +    
Sbjct: 45  LIQSDVGISTSMELVENLRKKVKERKIADPLLLNEV--LKENIVELLGEKIELKLNDSGT 102

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            V LVVGVNGVGKTT +GKL++   + G  V+LAAGDTFR+AAI+QL+ W  R   D + 
Sbjct: 103 TVYLVVGVNGVGKTTTLGKLARHFRNEGKSVLLAAGDTFRAAAIEQLEAWGQRAGVDVIK 162

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G+D AA+ ++A + A+A+K D+L++DTAGRLHN   LM  + KM RV++R  P APH
Sbjct: 163 QSEGADPAAVTFDALQAAKARKTDILLVDTAGRLHNKVNLMKELTKMKRVVEREIPSAPH 222

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            VL +LDATTGQNA++QV +F   A  TG+I+TK+DGTA+GG ++ I    ++PV  +G+
Sbjct: 223 EVLLILDATTGQNAIQQVRIFQEAAEVTGIILTKLDGTAKGGVILGIQGEARVPVKMIGI 282

Query: 292 GEGINDLEPFVAKDFSAVITG 312
           GEG+ DL+PF    F+  + G
Sbjct: 283 GEGLEDLKPFEPDQFAEALFG 303


>gi|254671754|emb|CBA09584.1| cell division protein [Neisseria meningitidis alpha153]
          Length = 421

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|270158016|ref|ZP_06186673.1| cell division protein FtsY [Legionella longbeachae D-4968]
 gi|289163717|ref|YP_003453855.1| Cell division protein FtsY homolog [Legionella longbeachae NSW150]
 gi|269990041|gb|EEZ96295.1| cell division protein FtsY [Legionella longbeachae D-4968]
 gi|288856890|emb|CBJ10701.1| Cell division protein FtsY homolog [Legionella longbeachae NSW150]
          Length = 350

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 126/300 (42%), Positives = 182/300 (60%), Gaps = 9/300 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +  K  + T  +L +GI  ++   + +   + +ELE LLI +D+G+   Q ++ +L 
Sbjct: 45  FFARFRKSLSKTRHQLGDGIGRLLLGKKEISQELLDELETLLISADLGIETTQAVLNQLT 104

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTT 126
                K +S    +Y   E +   L  + K  N   +     H P VIL+VGVNG GKTT
Sbjct: 105 EGLARKQLSDGNAVY---EALKSYLQGILKQKNQSLTLETADHSPFVILMVGVNGAGKTT 161

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K+    G KVMLAAGDTFR+AA++QL +W +R     +    G+D+A++ ++A 
Sbjct: 162 TIGKLAKQFQQQGKKVMLAAGDTFRAAAVEQLLVWGERNDIPVIAQHTGADSASVIFDAL 221

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+K+DVLI DTAGRLH  S LM  + K+ RVL++L P APH  + +LDA+ GQNAL
Sbjct: 222 QAAKARKMDVLIADTAGRLHTQSNLMEELKKVKRVLQKLSPDAPHETMLILDASIGQNAL 281

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F+   G TG+ MTK+DGTA+GG L  I     IP  ++G+GEGI DL+PF A  F
Sbjct: 282 VQARQFNEAIGLTGVTMTKLDGTAKGGILFAIANELGIPFRYIGIGEGIEDLQPFDAAQF 341


>gi|261856138|ref|YP_003263421.1| signal recognition particle-docking protein FtsY [Halothiobacillus
           neapolitanus c2]
 gi|261836607|gb|ACX96374.1| signal recognition particle-docking protein FtsY [Halothiobacillus
           neapolitanus c2]
          Length = 391

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/279 (43%), Positives = 178/279 (63%), Gaps = 3/279 (1%)

Query: 30  EGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD- 87
           EG+ D+ +  + +DD + EE+E  LI +D+G A  + +++ L  +   K ++    L++ 
Sbjct: 104 EGLGDLFLGKKAIDDELLEEVETRLIMADVGQATTRALIDALHQQISRKQINDTEALFET 163

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           +S+L+ + L  + KP     + +PH+I+V G+NG GKTT IGKL+     +G KVMLAAG
Sbjct: 164 LSQLMIERLERVQKPRPAP-TEQPHIIVVCGINGAGKTTTIGKLAHHYKQSGHKVMLAAG 222

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QL  W +R     +      D+A++ ++A + A+A+ +DVLI DTAGRLH 
Sbjct: 223 DTFRAAAVEQLITWGERNQIPVIGEPGRQDSASVLFDAAQSARARNMDVLIADTAGRLHT 282

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
              LM  + K+IRV+ +  P APH +L VLDA+ GQNAL Q   FH   G TGLI+TK+D
Sbjct: 283 QGGLMDELKKLIRVVSKSIPGAPHEILLVLDASIGQNALNQARQFHEAVGVTGLIVTKLD 342

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GTA+GG L  I    K+P+ F+GVGE I DL PF  K +
Sbjct: 343 GTAKGGILFAIADELKLPIDFIGVGEQIADLRPFDPKGY 381


>gi|212639593|ref|YP_002316113.1| signal recognition particle GTPase [Anoxybacillus flavithermus WK1]
 gi|212561073|gb|ACJ34128.1| Signal recognition particle GTPase [Anoxybacillus flavithermus WK1]
          Length = 332

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/309 (42%), Positives = 195/309 (63%), Gaps = 8/309 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+A ++ +   K  +G   T       + D+I+  R++D+   EELE++LI SD+GVA 
Sbjct: 9   EKIAKQADTVTEKFKRGLEKTRDSFAGKVNDLIARYRKVDEEFFEELEEILIASDVGVAT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPH---VILVV 117
               ++EL  +   +++   + +Y V   +LI   +   S     + + +P+   VIL V
Sbjct: 69  VMDFIDELKMEVKRRNIQDPKEMYSVISEKLID--IYEASGEEKTELNIQPNGLTVILFV 126

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K+   G KVMLAAGDTFR+ AI+QL++W +R   + +    GSD
Sbjct: 127 GVNGVGKTTTIGKLAYKLKSEGKKVMLAAGDTFRAGAIEQLEVWGERVGVEVIKQSAGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+++ VD+L+ DTAGRL N   LM  + K+ RV++R  P APH VL VL
Sbjct: 187 PAAVMYDAIQAAKSRNVDILLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVL 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQNA+ Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++D
Sbjct: 247 DATTGQNAMSQAKTFKEATNVTGIVLTKLDGTAKGGIVLAIRHELNIPVKFVGLGEKMDD 306

Query: 298 LEPFVAKDF 306
           LEPF A+ F
Sbjct: 307 LEPFNAEQF 315


>gi|15675985|ref|NP_273111.1| signal recognition particle protein [Neisseria meningitidis MC58]
 gi|9910689|sp|P57011|FTSY_NEIMB RecName: Full=Cell division protein ftsY homolog
 gi|7225266|gb|AAF40516.1| signal recognition particle protein [Neisseria meningitidis MC58]
 gi|316983616|gb|EFV62598.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis H44/76]
 gi|325199276|gb|ADY94731.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis H44/76]
          Length = 421

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|121633921|ref|YP_974166.1| signal recognition particle protein [Neisseria meningitidis FAM18]
 gi|120865627|emb|CAM09347.1| probable signal recognition particle protein [Neisseria
           meningitidis FAM18]
 gi|325139277|gb|EGC61821.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis ES14902]
          Length = 421

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|325207096|gb|ADZ02548.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis NZ-05/33]
          Length = 421

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|120601367|ref|YP_965767.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           vulgaris DP4]
 gi|120561596|gb|ABM27340.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           vulgaris DP4]
          Length = 483

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 188/301 (62%), Gaps = 7/301 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73
           KLT+G A T  ++   I  +++S  R+D+G  EELE++LI +D+G     +++  L  + 
Sbjct: 181 KLTEGLARTREQIGRRIDGLLASHGRIDEGFWEELEEILIMADVGFEPTTQLIGRLRERA 240

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           R A      R      EL+ + L  + + P      + P V+L++GVNGVGKTT I KL+
Sbjct: 241 RKAGTDDPARF----RELLREELEVIFRAPRRIAAVNPPEVVLLIGVNGVGKTTTIAKLA 296

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +    G KV++AAGDTFR+AAI+QL+IWA R  A F     G+D AA+AYEA  +A ++
Sbjct: 297 YRAQLQGRKVLIAAGDTFRAAAIEQLEIWAKRVGAGFYAKTAGADPAAVAYEAMDKAVSE 356

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D+L++DTAGRLH  + LM  + K+ +VL R  P APH  + V+DATTGQNAL Q ++F
Sbjct: 357 GYDLLLVDTAGRLHTKANLMEELHKIRKVLGRKHPGAPHRSILVIDATTGQNALSQTKLF 416

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +   G   +++TK+DGTA+GG ++ + +   IP+ ++G+GE + D+ PF   DF+  + G
Sbjct: 417 NEACGVDEIVLTKLDGTAKGGIVVAVAMQFGIPITYVGLGEKMEDMRPFNGSDFAMALLG 476

Query: 313 C 313
            
Sbjct: 477 V 477


>gi|307264842|ref|ZP_07546404.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920100|gb|EFN50312.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 318

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/311 (41%), Positives = 198/311 (63%), Gaps = 17/311 (5%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           +E   + +K+ +G   T   L   I  I++  R++D+ + EELE++LI +DIG++   KI
Sbjct: 15  AEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGISTTSKI 74

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +E +  K      + +R +YD S++       ++++L    +PF       P VILVVGV
Sbjct: 75  IEGIRQK------AKERKIYDASQIKKLLAEEVYEILQKDVEPFTL---TSPMVILVVGV 125

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+      G KV+LAAGDTFR+AAIDQL+IWA+R +   +  + GSD A
Sbjct: 126 NGVGKTTTIGKLAYLYKKEGKKVILAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGSDPA 185

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  + ++A+ +D+LI DTAGRLHN   LM  + K+ +V+ R  P A      VLDA
Sbjct: 186 SVIFDGIQASKARGIDILICDTAGRLHNKKNLMEELRKIRKVIDREYPEARVETFLVLDA 245

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL+Q ++F  V+  TG+++TK+DGTA+GG ++ I     +P+ ++G+GEGI DL+
Sbjct: 246 TTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGIGEGIEDLQ 305

Query: 300 PFVAKDFSAVI 310
            F AK F + I
Sbjct: 306 AFDAKSFVSAI 316


>gi|117923933|ref|YP_864550.1| signal recognition particle-docking protein FtsY [Magnetococcus sp.
           MC-1]
 gi|117607689|gb|ABK43144.1| signal recognition particle-docking protein FtsY [Magnetococcus sp.
           MC-1]
          Length = 304

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/304 (43%), Positives = 192/304 (63%), Gaps = 16/304 (5%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +++  KL K  A T       +  II+   LD  V EELE+LLI SD GV  A  I+ E 
Sbjct: 1   MAFFDKLRKSLAKTRESFTHTLETIITGNALDVDVLEELEELLITSDFGVQAAHNIIAET 60

Query: 71  LTKRYAKDV-----SVQRVLYDV-SELI--HKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             +R+ ++       V+++L  V ++ +  H   + L  P        PH +++VGVNGV
Sbjct: 61  -KERFPREAPEGNHKVKKMLKIVIADRLRRHHAALQLVTP-------GPHALMMVGVNGV 112

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKLS    + GL ++LAAGDTFR+AA++QL+IW +RT    +     +DAA++ 
Sbjct: 113 GKTTTIGKLSAYYKEQGLDLLLAAGDTFRAAAVEQLQIWGERTQTPVIAQGQNADAASVI 172

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A+  A  + VD+LI DTAGRLH  + LM  + K++RV+K+L+  APH +  VLDATTG
Sbjct: 173 YDAYAAAHKRGVDLLIADTAGRLHTKTNLMEELKKVLRVIKKLESTAPHDIWLVLDATTG 232

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ QV++FH   G TGLI+TK+DGTA+GG ++ I     +P+ F+GVGEG+ DL PF 
Sbjct: 233 QNAINQVKIFHEALGLTGLIITKLDGTAKGGVVVGICEQFNLPIRFIGVGEGVEDLRPFD 292

Query: 303 AKDF 306
            ++F
Sbjct: 293 PQEF 296


>gi|261415969|ref|YP_003249652.1| signal recognition particle-docking protein FtsY [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372425|gb|ACX75170.1| signal recognition particle-docking protein FtsY [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302325501|gb|ADL24702.1| signal recognition particle-docking protein FtsY [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 306

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/290 (42%), Positives = 187/290 (64%), Gaps = 3/290 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           +  G A T   L   +  I+ + ++ D   EELE+ LI++D+GV  A  + + L      
Sbjct: 7   IKSGLAKTRDALLGELKGIVGAGKITDETLEELEEHLIKADVGVEAAFLLTDALRENALG 66

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           K ++ ++VL D+     + L+    PF  +   +PHV+LV+GVNG GKTT IGKL+ ++ 
Sbjct: 67  KSLTTEQVL-DIMRNEAERLLKDPPPF--ELKGKPHVVLVIGVNGAGKTTTIGKLAARLK 123

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           + G KVM+AA DTFR+AAIDQL+ WA R+ A+FV  + GSD AA+AY+A   A A+  DV
Sbjct: 124 NEGKKVMIAACDTFRAAAIDQLETWAQRSGAEFVKHQEGSDPAAVAYDACSAAVARGCDV 183

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDTAGRLHN   LM  + K++RV+K++ P  PH +  V+D  TGQN + Q ++F+   
Sbjct: 184 VLIDTAGRLHNKDYLMEELKKIVRVIKKVSPDMPHDMWLVIDGNTGQNTINQTKIFNQSF 243

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             TGL++TK+DGTARGG ++ I  + +IP+ ++G+GE I+ L  F  +D+
Sbjct: 244 PLTGLVVTKLDGTARGGSVLSIASSLQIPIRWVGMGERIDQLVEFNKRDY 293


>gi|261391594|emb|CAX49032.1| cell division protein FtsY [Neisseria meningitidis 8013]
          Length = 421

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|46581462|ref|YP_012270.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450884|gb|AAS97530.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235115|gb|ADP87969.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           vulgaris RCH1]
          Length = 488

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 188/301 (62%), Gaps = 7/301 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73
           KLT+G A T  ++   I  +++S  R+D+G  EELE++LI +D+G     +++  L  + 
Sbjct: 186 KLTEGLARTREQIGRRIDGLLASHGRIDEGFWEELEEILIMADVGFEPTTQLIGRLRERA 245

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           R A      R      EL+ + L  + + P      + P V+L++GVNGVGKTT I KL+
Sbjct: 246 RKAGTDDPARF----RELLREELEVIFRAPRRIAAVNPPEVVLLIGVNGVGKTTTIAKLA 301

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +    G KV++AAGDTFR+AAI+QL+IWA R  A F     G+D AA+AYEA  +A ++
Sbjct: 302 YRAQLQGRKVLIAAGDTFRAAAIEQLEIWAKRVGAGFYAKTAGADPAAVAYEAMDKAVSE 361

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D+L++DTAGRLH  + LM  + K+ +VL R  P APH  + V+DATTGQNAL Q ++F
Sbjct: 362 GYDLLLVDTAGRLHTKANLMEELHKIRKVLGRKHPGAPHRSILVIDATTGQNALSQTKLF 421

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +   G   +++TK+DGTA+GG ++ + +   IP+ ++G+GE + D+ PF   DF+  + G
Sbjct: 422 NEACGVDEIVLTKLDGTAKGGIVVAVAMQFGIPITYVGLGEKMEDMRPFNGSDFAMALLG 481

Query: 313 C 313
            
Sbjct: 482 V 482


>gi|282878891|ref|ZP_06287655.1| signal recognition particle-docking protein FtsY [Prevotella
           buccalis ATCC 35310]
 gi|281298890|gb|EFA91295.1| signal recognition particle-docking protein FtsY [Prevotella
           buccalis ATCC 35310]
          Length = 319

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/273 (44%), Positives = 178/273 (65%), Gaps = 7/273 (2%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM 97
           ++DD V + LE++L+ SD+GV    KI+E +  +R A+D  VS   +   + + I  +L 
Sbjct: 39  KVDDEVLDNLEEVLVTSDVGVGTTLKIIERI-EQRVARDKYVSTAELNSILRDEIAALLA 97

Query: 98  PLSKP--FNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             +     NWD    H+P+VILVVGVNGVGKTT IGKL+ +   +G KV L A DT+R+A
Sbjct: 98  ENNTEDHENWDLPADHQPYVILVVGVNGVGKTTTIGKLAYQFKASGKKVFLGAADTYRAA 157

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A+DQ+KIW +R     V  ++G+D A++A++  + A+A   DV++IDTAGRLHN   LM 
Sbjct: 158 AVDQIKIWGERVGVPVVSQQMGADPASVAFDTLQSAKANGADVVLIDTAGRLHNKVGLMN 217

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+  V+K++ P AP  VL VLD +TGQNA  Q + F AV   T L +TK+DGTA+GG
Sbjct: 218 ELKKIKDVMKKVLPQAPDEVLLVLDGSTGQNAFEQAKQFSAVTQITSLAITKLDGTAKGG 277

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            +I I    K+PV ++G+GE ++DL+ F  ++F
Sbjct: 278 VVIGISDQLKVPVKYIGLGEQMDDLQLFNRREF 310


>gi|167585413|ref|ZP_02377801.1| Cell division transporter substrate-binding protein FtsY
           [Burkholderia ubonensis Bu]
          Length = 345

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 184/302 (60%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L  G A TS      IT +  S ++D+ + EELE  L+ SD GV   + +++ L 
Sbjct: 50  SWLARLKSGLAKTS----SSITGVFVSTKIDEDLYEELETALLMSDAGVDATEYLLDALR 105

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   + +L+  +L PL K      + +P V+++ GVNG GKTT IGK
Sbjct: 106 EKVRTGRLTDPQQVKAALHDLLVDLLKPLEKSLMLGRA-QPLVMMIAGVNGAGKTTSIGK 164

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 165 LAKHLQSFDQSVLLAAGDTFRAAAREQLTIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 223

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 224 ARGIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNALTQVK 283

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A +F+  +
Sbjct: 284 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADAL 343

Query: 311 TG 312
            G
Sbjct: 344 LG 345


>gi|222056675|ref|YP_002539037.1| signal recognition particle-docking protein FtsY [Geobacter sp.
           FRC-32]
 gi|221565964|gb|ACM21936.1| signal recognition particle-docking protein FtsY [Geobacter sp.
           FRC-32]
          Length = 342

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 126/295 (42%), Positives = 186/295 (63%), Gaps = 18/295 (6%)

Query: 27  KLKEGITD------------IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---EELL 71
           +LK+G+T             ++  +++D  V EELE++LI +DIGV    +++   E+ L
Sbjct: 46  RLKQGLTKTHESIVGRIDSLLLGQKQIDADVLEELEEILITADIGVKTTVELIRTLEQRL 105

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +   KD +  +    + + I   L+ +    +   + +P VILV+GVNGVGKTT IGKL
Sbjct: 106 KRNELKDGNALKAA--LKQEITNRLVQVESGLDI-IAAKPFVILVIGVNGVGKTTTIGKL 162

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +   AG KV+LAAGDTFR+AA +QL+IW +R  A+ V  + G+D +A+A++A K A A
Sbjct: 163 AAQYRLAGKKVLLAAGDTFRAAAAEQLEIWGERVGAEVVRHKEGADPSAVAFDACKAALA 222

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVL+IDTAGRLH    LM  + K+ RV++R  P APH  L VLDA TGQNA+ Q  +
Sbjct: 223 RGCDVLLIDTAGRLHTKVNLMEEMKKIRRVIEREIPGAPHETLLVLDAATGQNAISQASL 282

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F   A  TGLI+TK+DGTA+GG ++ +     +PV ++GVGEG+ DL  F  ++F
Sbjct: 283 FKEAAQVTGLILTKLDGTAKGGIVVAVSHEFSLPVRYIGVGEGVEDLREFEPQEF 337


>gi|78067608|ref|YP_370377.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           383]
 gi|77968353|gb|ABB09733.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           383]
          Length = 388

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/310 (42%), Positives = 187/310 (60%), Gaps = 13/310 (4%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   + +
Sbjct: 88  ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYL 143

Query: 67  V----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +    E++ T R      V+  L+D   L+ ++L PL K      + +P V+++ GVNG 
Sbjct: 144 LGALREKVRTGRLTDPQQVKSALHD---LLVELLTPLEKSLMLGRA-QPLVMMITGVNGA 199

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ 
Sbjct: 200 GKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVI 258

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TG
Sbjct: 259 FDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTG 318

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF 
Sbjct: 319 QNALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFS 378

Query: 303 AKDFSAVITG 312
           A +F+  + G
Sbjct: 379 AVEFADALLG 388


>gi|119897057|ref|YP_932270.1| signal recognition particle-docing protein FtsY [Azoarcus sp. BH72]
 gi|119669470|emb|CAL93383.1| probable signal recognition particle-docing protein FtsY [Azoarcus
           sp. BH72]
          Length = 377

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 126/298 (42%), Positives = 191/298 (64%), Gaps = 5/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L  G A T  +L  G+ ++   R++D+ + EELE  L+ +D GV   Q +++EL
Sbjct: 63  LSWGERLKAGLARTRQQLGGGLANLFGRRKIDEDLLEELETTLLMADCGVDATQYLLDEL 122

Query: 71  LTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              R+ +D   +  ++   +++ +HK++ PL +P +    H+P++I++ GVNG GKTT I
Sbjct: 123 RL-RWKRDRLETADQLQAALADALHKIIAPLEQPLDVS-GHKPYIIMIAGVNGSGKTTSI 180

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K     G  V+LAAGDTFR+AA +QL  W +R +   +  + G DAAA+ ++A   
Sbjct: 181 GKLAKYFQAQGKSVLLAAGDTFRAAAREQLMTWGERNNVTVIAQD-GGDAAAVIFDAINA 239

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +D+++ DTAGRL     LM  I K+ RV+ + D   PH V+ VLDA  GQNAL Q
Sbjct: 240 ARARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIAKADASGPHEVVLVLDANIGQNALAQ 299

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           V+ F A  G TGL++TK+DGTA+GG +  I      P+ F+GVGEGI+DL+PF A++F
Sbjct: 300 VKAFDAAIGVTGLVVTKLDGTAKGGVVAAIARQCPKPLRFIGVGEGIDDLQPFKAREF 357


>gi|313673049|ref|YP_004051160.1| signal recognition particle-docking protein ftsy [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939805|gb|ADR18997.1| signal recognition particle-docking protein FtsY [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 325

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 140/311 (45%), Positives = 198/311 (63%), Gaps = 12/311 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60
           ++++   +   ++ +L +G + TS KL  GI  II  R+ +DD + EELE+L I +DIGV
Sbjct: 12  NDEQREEDEKGFLNRLKEGLSKTSSKLVGGIEAIILGRKKIDDDLLEELEELFITADIGV 71

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-----PHVIL 115
               KI+E     +   DVS + +L D  EL + +   L K  + D S +     P VIL
Sbjct: 72  NTTIKIIE-----KVKNDVS-RNILKDPVELKNAIKDELIKILSIDNSLKKVDTSPFVIL 125

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNG GKTT I KL++   + G  V+LAAGDTFR+AAIDQL++W DR     V    G
Sbjct: 126 VVGVNGTGKTTTIAKLARMFKNNGFSVLLAAGDTFRAAAIDQLQVWGDRIGVPVVKQSEG 185

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD+AA+ Y+A + A+A+  D++I DTAGRLHN   LM  + K+++VL +    APH VL 
Sbjct: 186 SDSAAVIYDAVESAKARGNDIVIADTAGRLHNKFNLMNELKKIVKVLGKSVVDAPHEVLL 245

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DAT+GQNA+ Q + F    G TG+++TK+DGTA+GG ++ IV    IPV F+G GE +
Sbjct: 246 VIDATSGQNAIEQAKRFKEDVGVTGIVLTKLDGTAKGGVIVGIVDETGIPVKFIGFGEKM 305

Query: 296 NDLEPFVAKDF 306
           +DL+PF AK F
Sbjct: 306 DDLKPFDAKLF 316


>gi|167568708|ref|ZP_02361582.1| signal recognition particle-docking protein FtsY [Burkholderia
           oklahomensis C6786]
          Length = 366

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/302 (42%), Positives = 183/302 (60%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L  G A TS      IT++  + ++D+ + EELE  L+ SD GV   + +++ L 
Sbjct: 71  SWLARLKSGLAKTS----SSITNVFVNTKIDEALYEELETALLMSDAGVDATEHLLDALR 126

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+  +L PL K      +  P V+++ GVNG GKTT IGK
Sbjct: 127 EKVRTGRLTDPQQVKDALRGLLVDLLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 185

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 186 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 244

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQN L QV+
Sbjct: 245 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNGLAQVK 304

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++F+  +
Sbjct: 305 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFADAL 364

Query: 311 TG 312
            G
Sbjct: 365 LG 366


>gi|327398967|ref|YP_004339836.1| signal recognition particle-docking protein FtsY [Hippea maritima
           DSM 10411]
 gi|327181596|gb|AEA33777.1| signal recognition particle-docking protein FtsY [Hippea maritima
           DSM 10411]
          Length = 303

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 182/299 (60%), Gaps = 18/299 (6%)

Query: 19  KGFASTSLKLKEGITDII-SSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELL-- 71
           KG A    K K+G T+ I    + D+ + +E    +E+LLI SD GV    KI++ +   
Sbjct: 5   KGIADKLFKTKQGFTEKIHEESKKDEPITDEYLDFIEELLIESDFGVKTTMKIMDAINEG 64

Query: 72  ----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
               + R  +DV ++     + E+I  +L  + KP   +  H+  VILVVG+NG GKTT 
Sbjct: 65  IDSGSIRTRQDVEIK-----IREVILSILKQVEKPL--EIKHKKFVILVVGINGSGKTTT 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+   +D G KVML A DTFR+AAI+QL+ WA R SA  V    G+D AA+A++   
Sbjct: 118 IGKLASLNTDKGKKVMLVAADTFRAAAIEQLEEWAKRASASIVKQNEGADPAAVAFDGVS 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              A+  DV+ +DTAGRLH    LM  + K+ + +++  P APH VL VLDAT GQNA+ 
Sbjct: 178 SGIARNYDVIFVDTAGRLHTQKNLMNEVIKIKKAVQKAYPEAPHEVLLVLDATIGQNAIN 237

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q   F+     +G+++TKMDGTA+GG ++ I    KIP+ ++G+GE ++DL+ F A+DF
Sbjct: 238 QAREFNKALAISGIVLTKMDGTAKGGIIVAISEEFKIPIRYIGIGESLDDLKAFNARDF 296


>gi|261368256|ref|ZP_05981139.1| signal recognition particle-docking protein FtsY [Subdoligranulum
           variabile DSM 15176]
 gi|282569771|gb|EFB75306.1| signal recognition particle-docking protein FtsY [Subdoligranulum
           variabile DSM 15176]
          Length = 321

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 188/309 (60%), Gaps = 8/309 (2%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
              + ++ +     +K+ +G   T     + I + +++ ++DD +  +LE+ LI +D+G 
Sbjct: 4   FKKRNISEKEFEEQQKMQRGLEKTRTGFFQNILNTLTNCQIDDDLYNDLEEQLILADVGP 63

Query: 61  AVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           A A ++V+EL   + K + K  + +  L  +  +I + L P    +  +    P VILV+
Sbjct: 64  ACAVRLVDELRDEVEKNHLK--TGEEALDALRGIICQELTPR---YPLELDGHPAVILVI 118

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT I KL+    + G +VMLAAGDTFR+AA +QL++WADR     V +  G+D
Sbjct: 119 GVNGVGKTTTIAKLAHLYKEEGRRVMLAAGDTFRAAASEQLELWADRAGVPLVQAGQGAD 178

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A K A AK  D++I DTAGRLHN   LM  +GK+ R +K+  P A   VL VL
Sbjct: 179 PAAVIFDAVKSATAKGYDMVIADTAGRLHNKKGLMDELGKISRSVKKASPEASLEVLLVL 238

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQNA+ Q E F   AG TG+++TK+DGT +GG  + +     +P+ F+GVGE I+D
Sbjct: 239 DAITGQNAISQAEEFCRAAGATGVVLTKLDGTPKGGCAVSVWENLGLPIRFVGVGEKIDD 298

Query: 298 LEPFVAKDF 306
           L PF A+ F
Sbjct: 299 LMPFDAQTF 307


>gi|313891634|ref|ZP_07825241.1| signal recognition particle-docking protein FtsY [Dialister
           microaerophilus UPII 345-E]
 gi|313119912|gb|EFR43097.1| signal recognition particle-docking protein FtsY [Dialister
           microaerophilus UPII 345-E]
          Length = 313

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 125/298 (41%), Positives = 192/298 (64%), Gaps = 5/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S+  ++ KG   T   L + I  I I    +D+   + LE +L+  D+GV     ++ +
Sbjct: 1   MSFFDRIKKGLEKTKKGLIQNIESIVIGYAHIDEEFLDNLEMILVSGDLGVRTTDYLMRQ 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHK-MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  +R  K+ ++     +V   I K M+  L++    + +H P V L+VGVNGVGKTT I
Sbjct: 61  I--RRGVKEGNISNT-SEVMPFIEKTMIELLTENDEKEENHVPEVYLIVGVNGVGKTTTI 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +MS AG KV+LAAGDT+R+AA +QL IWA+RT +D V    G+D AA+A++A   
Sbjct: 118 GKLAYQMSKAGKKVLLAAGDTYRAAASEQLTIWAERTGSDIVKHAEGADPAAVAFDALTA 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV+++DTAGR+   + LM  +GK+ +V+K++ P APH  L VLDATTGQNA+ Q
Sbjct: 178 AKARNIDVVLVDTAGRIQTKTNLMNELGKINKVMKKVIPDAPHQTLLVLDATTGQNAVSQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F  V   TG+++TK+DGTA+GG ++ I    K+PV ++G+GE  +DL+ F A  F
Sbjct: 238 AKHFKEVVDITGIVLTKLDGTAKGGVVLSIHEELKVPVKWIGLGEREDDLQKFDASVF 295


>gi|327313610|ref|YP_004329047.1| signal recognition particle-docking protein FtsY [Prevotella
           denticola F0289]
 gi|326944322|gb|AEA20207.1| signal recognition particle-docking protein FtsY [Prevotella
           denticola F0289]
          Length = 316

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/292 (43%), Positives = 182/292 (62%), Gaps = 8/292 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T   +   +T  ++ + ++DD V ++LE++L+ SD+GV    KI+  +  +R 
Sbjct: 15  LDKGLEKTKQNVFSKLTRAVAGKSKVDDEVLDDLEEILVTSDVGVDTTIKIIRRI-EERV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFN--WDFSH--RPHVILVVGVNGVGKTTVIG 129
           AKD  VS   +   +   I  +L   +   N  W      RP+VILVVGVNGVGKTT IG
Sbjct: 74  AKDKYVSTSELNGILKSEITALLTENNTGSNDEWTLPEDARPYVILVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KV L A DTFR+AA++Q++IW DR     V  ++G+D A++A++  + A
Sbjct: 134 KLAYQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVVKQQMGADPASVAFDTLQSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +TGQNA  Q 
Sbjct: 194 KANGADVVIIDTAGRLHNKVGLMNELKKIKDVMKKVVPDAPHEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F
Sbjct: 254 RQFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLF 305


>gi|228470068|ref|ZP_04054977.1| signal recognition particle-docking protein FtsY [Porphyromonas
           uenonis 60-3]
 gi|228308206|gb|EEK17061.1| signal recognition particle-docking protein FtsY [Porphyromonas
           uenonis 60-3]
          Length = 319

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 183/306 (59%), Gaps = 19/306 (6%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---- 67
           S + KLT+  A  S              ++DD + ++LED+L+ SD+GV    KI+    
Sbjct: 25  SMVDKLTRAVAGKS--------------KVDDAILDDLEDILVTSDVGVDTTLKIIKRIE 70

Query: 68  EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           E +   +Y     ++ +L D V+ L+ +      + F       P+VI+VVGVNGVGKTT
Sbjct: 71  ERVARDKYVGTSELKSILRDEVAALLAENGTTDGESFTLPAEAHPYVIMVVGVNGVGKTT 130

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ +    G +++L A DTFR+AAI+QL+IW +R     +  ++GSD A++A++  
Sbjct: 131 TIGKLAYQFKQQGKRIVLGAADTFRAAAIEQLEIWGERVGVPVIKQQMGSDPASVAFDTL 190

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A A+  DV+IIDTAGRLHN   LM  + K+ RV+ ++ P APH VL VLD +TGQNA 
Sbjct: 191 QSAVAQNADVVIIDTAGRLHNQVSLMNELSKIKRVMAKVVPDAPHEVLLVLDGSTGQNAF 250

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F A    + L +TK+DGTA+GG +I I    K+PV ++G+GE I DL+ F  ++F
Sbjct: 251 EQAKQFTAATDVSALAITKLDGTAKGGVVIGISDQFKVPVKYIGLGEKIEDLQVFRKREF 310

Query: 307 SAVITG 312
              I G
Sbjct: 311 VDSIFG 316


>gi|323345504|ref|ZP_08085727.1| cell division protein FtsY [Prevotella oralis ATCC 33269]
 gi|323093618|gb|EFZ36196.1| cell division protein FtsY [Prevotella oralis ATCC 33269]
          Length = 317

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/278 (44%), Positives = 176/278 (63%), Gaps = 7/278 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELI 92
           I     +DD V + LE++LI SD+GV    KI+  +  +R AKD  VS   +   + E I
Sbjct: 34  IAGKSTVDDDVLDNLEEVLITSDVGVDTTLKIIHRI-EERVAKDKYVSTSELNGILREEI 92

Query: 93  HKMLMP--LSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             +L         NWD    H+P+VILVVGVNGVGKTT IGKL+ +  +AG KV L A D
Sbjct: 93  TSLLAENHTVDNDNWDLPSDHKPYVILVVGVNGVGKTTTIGKLAWQFKNAGKKVFLGAAD 152

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+AA++Q++IW +R     +  ++GSD A++A++  + A+A   DV++IDTAGRLHN 
Sbjct: 153 TFRAAAVEQIQIWGERVGVPVIRQQMGSDPASVAFDTLQSAKANGADVVLIDTAGRLHNK 212

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  + K+  V+K++ P AP  V+ VLD +TGQNA  Q + F AV   T L +TK+DG
Sbjct: 213 IGLMNELKKIKDVMKKVLPEAPDEVMLVLDGSTGQNAFEQAKQFSAVTQITSLAITKLDG 272

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TA+GG +I I    K+PV ++G+GEG+ DL+ F  + F
Sbjct: 273 TAKGGVVIGISDQLKVPVKYIGLGEGVEDLQLFNNRQF 310


>gi|85058062|ref|YP_453764.1| cell division protein [Sodalis glossinidius str. 'morsitans']
 gi|84778582|dbj|BAE73359.1| cell division protein [Sodalis glossinidius str. 'morsitans']
          Length = 504

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 127/309 (41%), Positives = 192/309 (62%), Gaps = 12/309 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +  A E   +  +L      T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 193 EPPAPERAGFFTRLKNSLVKTRQNLGSGFIGLFRGKKIDDDLFEELEEQLLVADVGVETT 252

Query: 64  QKIVEELLT---KRYAKDVSVQRVLYDVSELIHKM---LMPLSKPFNWDFSHRPHVILVV 117
           +KI++ L+    +R+ KD      LY  S+L  +M   L+ + +P        P VIL+V
Sbjct: 253 RKIIDGLIDHADRRHLKDAEA---LY--SQLRAEMATILVNVERPLEV-TGKAPFVILMV 306

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL++     G  VMLAAGDTFR+AA++QL++W +R     +  + G+D
Sbjct: 307 GVNGVGKTTTIGKLARLYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQQTGAD 366

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           +A++ +++ + A+A+ ++VLI DTAGRL N + LM  + K++RV+K+LD  APH V+  L
Sbjct: 367 SASVIFDSIQAAKARGIEVLIADTAGRLQNKAHLMDELKKIVRVMKKLDVEAPHEVMLTL 426

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNA+ Q  +F+   G TG+ +TK+DGTA+GG +  +     IP+ F+GVGE I D
Sbjct: 427 DASTGQNAVSQANLFNDAVGLTGIALTKLDGTAKGGVIFAVADRFGIPIRFIGVGEAIED 486

Query: 298 LEPFVAKDF 306
           L PF A DF
Sbjct: 487 LRPFKADDF 495


>gi|303247153|ref|ZP_07333428.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           fructosovorans JJ]
 gi|302491579|gb|EFL51464.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           fructosovorans JJ]
          Length = 538

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 189/302 (62%), Gaps = 9/302 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL++G A T  ++ + I  ++ S   +D+   EELE++LI +D+G   A K+++ L  K 
Sbjct: 241 KLSEGLAKTKDQIVKRIDGLLGSHTVIDEAFWEELEEILIMADVGYEPAAKLMDNLREKV 300

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +  +   V  D+  E + ++  P    K  N      P V++++GVNGVGKTT I KL
Sbjct: 301 RKRGTTDPAVFKDILREELAEIFRPQKTIKAIN-----PPEVVMMIGVNGVGKTTTIAKL 355

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KV++AAGDTFR+AAI+QLKIWADR  A F      +D AA+A+EA  +A  
Sbjct: 356 AHRDIMRGKKVLIAAGDTFRAAAIEQLKIWADRVGASFYTKGENADPAAVAFEAMDKALT 415

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVL +DTAGRLH  + LM  + K+ RV+ +    APH  + VLDATTGQNAL Q ++
Sbjct: 416 EGFDVLYLDTAGRLHTKTNLMEELRKIRRVVAKKHTGAPHRSVLVLDATTGQNALSQTKL 475

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+  AG   +I+TK+DGTA+GG ++ I ++  +P+ ++G+GE + DL PFV +DF+  + 
Sbjct: 476 FNEAAGVDEIILTKLDGTAKGGVVVGIALSFGVPITYVGLGEKMEDLRPFVGQDFAQALL 535

Query: 312 GC 313
           G 
Sbjct: 536 GV 537


>gi|288800011|ref|ZP_06405470.1| signal recognition particle-docking protein FtsY [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288333259|gb|EFC71738.1| signal recognition particle-docking protein FtsY [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 319

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/279 (44%), Positives = 177/279 (63%), Gaps = 9/279 (3%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELI 92
           I+   ++DD V + LE++LI SD+GV    KI+E +  +R A+D  VS   +   + E I
Sbjct: 34  IVGKSKVDDEVLDSLEEILISSDVGVDTTLKIIERI-EERIARDKYVSTSELNGILREEI 92

Query: 93  HKMLMPLSKPFN---WDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             +L   +  F+   WD     +P+VILVVGVNGVGKTT IGKL+ +   AG KV L A 
Sbjct: 93  SALLTE-NNTFDSDSWDLPSDRKPYVILVVGVNGVGKTTTIGKLAYQFKKAGKKVYLGAA 151

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++Q+ IW DR     V  ++G+D A++A++    A+A   DV++IDTAGRLHN
Sbjct: 152 DTFRAAAVEQISIWGDRVGVPVVKQQMGADPASVAFDTLSSAKANDADVVLIDTAGRLHN 211

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
              LM  + K+  V+K++ P AP  VL VLD +TGQNA  Q + F AV   T L +TK+D
Sbjct: 212 KVGLMNELKKIKDVMKKVFPTAPDEVLLVLDGSTGQNAFEQAKQFSAVTQITSLAITKLD 271

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GTA+GG +I I    K+PV ++G+GEG+ +L+ F  K F
Sbjct: 272 GTAKGGVVIGISDQLKVPVKYIGLGEGMENLQLFNKKQF 310


>gi|206559190|ref|YP_002229950.1| putative cell division protein [Burkholderia cenocepacia J2315]
 gi|198035227|emb|CAR51101.1| putative cell division protein [Burkholderia cenocepacia J2315]
          Length = 386

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 185/307 (60%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   + +
Sbjct: 86  ASAKKSWLARLKTGLAKTG----SSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYL 141

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +  L  K R  +    Q+V   + +L+ ++L PL K      +  P V+++ GVNG GKT
Sbjct: 142 LGALREKVRAGRLTDPQQVKAALHDLLVELLTPLEKSLMLGRAQ-PLVMMITGVNGAGKT 200

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ ++A
Sbjct: 201 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVIFDA 259

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 260 VSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQNA 319

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A +
Sbjct: 320 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVE 379

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 380 FADALLG 386


>gi|304440217|ref|ZP_07400107.1| cell division protein FtsY [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371266|gb|EFM24882.1| cell division protein FtsY [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 432

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/299 (40%), Positives = 182/299 (60%), Gaps = 2/299 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E + +  KL KG   T   +      II +  ++DD + E+LED+LI +D+G+    K+V
Sbjct: 128 EKIGFFAKLKKGLDKTRKDMSVKFNTIIGAYVKIDDEMLEDLEDILISADVGMETTMKLV 187

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + L        V+   ++  + +     LM + K    +   +  +ILVVGVNGVGKTT 
Sbjct: 188 DNLRESIIENKVNDPNMVVPLLKEETLKLMDIDKSSELNLGDKS-IILVVGVNGVGKTTT 246

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G  V++AAGDTFR+AAI+QLK W +R + D +    GSD AA+ ++A +
Sbjct: 247 IGKLANRFRKEGKSVLVAAGDTFRAAAIEQLKEWGNRANIDVIHQNEGSDPAAVIFDAIE 306

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+++ +DVLI DTAGRLHN   LM  + K+  V++   P A    L VLDATTGQNA+ 
Sbjct: 307 AAKSRNIDVLICDTAGRLHNKQNLMKELEKISNVIETKYPEATRETLLVLDATTGQNAIN 366

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q + F   A  TG+++TK+DGTA+GG ++ +     +P+  +GVGEGI+DL+ F +KDF
Sbjct: 367 QAKTFKEAANITGMVLTKLDGTAKGGVVLALQSELGVPIKLVGVGEGIDDLQNFNSKDF 425


>gi|258449436|ref|ZP_05697539.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A6224]
 gi|257857424|gb|EEV80322.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A6224]
          Length = 416

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/297 (42%), Positives = 180/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           K   G   +    +E + ++I+  R++D+   E LE++LI +D+G      + EEL    
Sbjct: 87  KFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA 146

Query: 72  TKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +R  +D    R  ++  + E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 147 QRRNIQDTEDLREVIVEKIVEIYHQE-DDNSEAMNIE-DGRLNVILMVGVNGVGKTTTIG 204

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD AA+ Y+A   A
Sbjct: 205 KLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAA 264

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N + LM  + K+ RV+ R  P A H  L  LDATTGQNAL Q 
Sbjct: 265 KNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDALHEALLCLDATTGQNALSQA 324

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESY 381


>gi|228474984|ref|ZP_04059712.1| cell division protein FtsY [Staphylococcus hominis SK119]
 gi|228270969|gb|EEK12357.1| cell division protein FtsY [Staphylococcus hominis SK119]
          Length = 409

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/297 (41%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G   +    +E + ++I+  R +D+   E LE++LI +D+G     ++ +EL T+ 
Sbjct: 81  KFKAGLEKSRENFQEQLNNLIARYRTVDEDFFEALEEMLITADVGFNTVMQLTDELRTEA 140

Query: 75  YAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +++     L +V      E+ H+     S+  N +   R +VIL+VGVNGVGKTT IG
Sbjct: 141 QRRNIKETEGLREVIVEKIVEIYHQE-DDHSEAMNIE-DGRLNVILMVGVNGVGKTTTIG 198

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AI+QL++W DR   + +    GSD AA+ Y+A   A
Sbjct: 199 KLAHRYKMEGKKVMLAAGDTFRAGAIEQLQVWGDRVGVEVIRQSEGSDPAAVVYDAINAA 258

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LDATTGQ+AL Q 
Sbjct: 259 KNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAVPDAPHEALLCLDATTGQSALSQA 318

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF  + +
Sbjct: 319 RSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNPESY 375


>gi|158320494|ref|YP_001513001.1| signal recognition particle-docking protein FtsY [Alkaliphilus
           oremlandii OhILAs]
 gi|158140693|gb|ABW19005.1| signal recognition particle-docking protein FtsY [Alkaliphilus
           oremlandii OhILAs]
          Length = 431

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/297 (46%), Positives = 194/297 (65%), Gaps = 15/297 (5%)

Query: 26  LKLKEGITDII-----SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           LK K GITD +     S +++D+ + EELE++LI SD+GV    +IVE+L  +   + +S
Sbjct: 138 LKTKSGITDRVDHLLKSYKKIDEDLFEELEEILITSDMGVQTTMEIVEDLKERVRKEKIS 197

Query: 81  ----VQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
               V+++L D ++E++ ++  P SK    +    P +ILVVGVNGVGKTT IGK++ + 
Sbjct: 198 DPLEVKQLLMDKITEILEEL--PDSK---INIEPSPAIILVVGVNGVGKTTSIGKMAYRF 252

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV+LAAGDTFR+AAIDQLKIW DR   D +  +  SD AA+ Y+A + A+A+  D
Sbjct: 253 KSEGKKVLLAAGDTFRAAAIDQLKIWGDRVGVDVIRHQEESDPAAVIYDAIQAAKARNTD 312

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           VLI DTAGRLHN   LM  +GK+ +V+ R   +A   VL VLDATTGQNA++Q + F  V
Sbjct: 313 VLICDTAGRLHNKKNLMNELGKIFKVVDREYENASKEVLLVLDATTGQNAVQQAKTFKEV 372

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           A  +GLI+TK+DGTA+GG ++ I     +PV  +GVGE + DL+ F  + F   I G
Sbjct: 373 ANISGLILTKLDGTAKGGVIVGISRELNVPVKLIGVGEKMEDLQEFNPQSFVKAIFG 429


>gi|323141213|ref|ZP_08076114.1| signal recognition particle-docking protein FtsY
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414356|gb|EFY05174.1| signal recognition particle-docking protein FtsY
           [Phascolarctobacterium sp. YIT 12067]
          Length = 305

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 123/298 (41%), Positives = 185/298 (62%), Gaps = 4/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     + I +++  S  +DD   +ELE +L+ +D+GV   +K+++ 
Sbjct: 1   MGFFERLKEGLSKTRRNFTDRIQELVGLSAAIDDDFLDELEMILLSADVGVKTTEKLIDA 60

Query: 70  LLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +      K++S  + V+  + + + +ML    +        +P VILVVGVNGVGKTT I
Sbjct: 61  VRKAAKKKEISGTEDVIPFLKKYMAEMLADSGQ--RTRIGAKPTVILVVGVNGVGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+   +    KV+LAAGDTFR+AA +QL+IW +R   D +    G+D AA+ ++A K 
Sbjct: 119 GKLANYFTLFKYKVVLAAGDTFRAAAGEQLQIWGERAHCDVIRHAEGADPAAVVFDAMKA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A A+K D+L IDTAGRLHN + LM  + K+ R++KR  P APH    VLDATTGQNA+ Q
Sbjct: 179 AIARKADILFIDTAGRLHNKANLMNELEKIHRIIKREIPEAPHETFLVLDATTGQNAINQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            ++F   A  TG+++TK+DGTA+GG ++ I     +PV ++GVGEGI D  PF    F
Sbjct: 239 AKVFMETAKVTGVVLTKLDGTAKGGVVVAIKEELGLPVKWIGVGEGIMDFRPFEPDKF 296


>gi|28198783|ref|NP_779097.1| cell division protein [Xylella fastidiosa Temecula1]
 gi|182681482|ref|YP_001829642.1| signal recognition particle-docking protein FtsY [Xylella
           fastidiosa M23]
 gi|28056874|gb|AAO28746.1| cell division protein [Xylella fastidiosa Temecula1]
 gi|182631592|gb|ACB92368.1| signal recognition particle-docking protein FtsY [Xylella
           fastidiosa M23]
 gi|307579937|gb|ADN63906.1| signal recognition particle-docking protein FtsY [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 397

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/269 (43%), Positives = 172/269 (63%), Gaps = 2/269 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMP 98
           RLD+ + +E+E  LI +D+GV+    IV+ L  +  A++ + +Q +L  +   +  +L P
Sbjct: 117 RLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQTLLAALRNELITILRP 176

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP        P V LVVGVNGVGKTT IGKL+K     G  +MLAAGDTFR+AA+ QL
Sbjct: 177 VSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQL 236

Query: 159 KIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           + W +R S   +  +   +DAA++ Y+A + A+A+ ++VLI DTAGRLH    LM  + K
Sbjct: 237 QAWGERNSITVIAQKGPNADAASVVYDALQAAKARSIEVLIADTAGRLHTQIGLMNELSK 296

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RVL +LD  APH VL V+D TTGQNAL Q+  FHA    TG+++TK+DGTA+GG +  
Sbjct: 297 IRRVLGKLDSTAPHEVLMVIDGTTGQNALSQLRQFHAAVNVTGIVVTKLDGTAKGGVVFT 356

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +     IP++F+ +GE + D+  F  + F
Sbjct: 357 LAREFGIPIHFISIGEQLEDMHFFDPEAF 385


>gi|73540040|ref|YP_294560.1| signal recognition particle-docking protein FtsY [Ralstonia
           eutropha JMP134]
 gi|72117453|gb|AAZ59716.1| signal recognition particle-docking protein FtsY [Ralstonia
           eutropha JMP134]
          Length = 382

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/313 (40%), Positives = 186/313 (59%), Gaps = 7/313 (2%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++  + A     W+++L  G + TS      I+ +    ++D+ + EELE  L+ +D GV
Sbjct: 76  LAAAQTAEARRGWMQRLRTGLSKTS----RNISTLFVGMKVDEALFEELETALLMADAGV 131

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + ++ EL  + R  +  S + V   + +L+ ++L PL K        +P V+++ GV
Sbjct: 132 EATEYLLGELRKRVRSDRIESAEGVKAALRDLLIQLLRPLEKTMELG-REQPLVMMIAGV 190

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL K     G  V+LAAGDTFR+AA +QL IW +R +   V  E G D A
Sbjct: 191 NGAGKTTSIGKLCKHFQHYGQSVLLAAGDTFRAAAREQLTIWGERNNVTVVAQESG-DPA 249

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+A+ +D+++ DTAGRL     LM  + K+ RV+ +  P APH VL V+DA
Sbjct: 250 AVIFDAVNAARARGIDIVMADTAGRLPTQLHLMEELKKVKRVISKAMPTAPHEVLLVIDA 309

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNAL Q   F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+
Sbjct: 310 NTGQNALAQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQ 369

Query: 300 PFVAKDFSAVITG 312
           PF A++F+  + G
Sbjct: 370 PFKAEEFADALLG 382


>gi|71275807|ref|ZP_00652091.1| Cell division transporter substrate-binding protein FtsY [Xylella
           fastidiosa Dixon]
 gi|71900406|ref|ZP_00682539.1| Cell division transporter substrate-binding protein FtsY [Xylella
           fastidiosa Ann-1]
 gi|170730211|ref|YP_001775644.1| cell division protein [Xylella fastidiosa M12]
 gi|71163385|gb|EAO13103.1| Cell division transporter substrate-binding protein FtsY [Xylella
           fastidiosa Dixon]
 gi|71729838|gb|EAO31936.1| Cell division transporter substrate-binding protein FtsY [Xylella
           fastidiosa Ann-1]
 gi|167965004|gb|ACA12014.1| cell division protein [Xylella fastidiosa M12]
          Length = 397

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 119/269 (44%), Positives = 171/269 (63%), Gaps = 2/269 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMP 98
           RLD+ + +E+E  LI +D+GV+    IV+ L  +  A++ + +Q +L  +   +  +L P
Sbjct: 117 RLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQTLLAALRNELITILRP 176

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP        P V LVVGVNGVGKTT IGKL+K     G  +MLAAGDTFR+AA+ QL
Sbjct: 177 VSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQL 236

Query: 159 KIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           + W +R S   +  +   +DAA++ Y+A + A+A+  +VLI DTAGRLH    LM  + K
Sbjct: 237 QAWGERNSITVIAQKGPNADAASVVYDALQAAKARSTEVLIADTAGRLHTQIGLMNELSK 296

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RVL +LD  APH VL V+D TTGQNAL Q+  FHA    TGL++TK+DGTA+GG +  
Sbjct: 297 IRRVLGKLDSTAPHEVLMVIDGTTGQNALSQLRQFHAAVNVTGLVVTKLDGTAKGGVVFT 356

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +     IP++F+ +GE + D+  F  + F
Sbjct: 357 LAREFGIPIHFISIGEQLEDMHFFDPEAF 385


>gi|331701483|ref|YP_004398442.1| signal recognition particle-docking protein FtsY [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128826|gb|AEB73379.1| signal recognition particle-docking protein FtsY [Lactobacillus
           buchneri NRRL B-30929]
          Length = 446

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 121/312 (38%), Positives = 189/312 (60%), Gaps = 9/312 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S +   S + S  ++  KG   +     + +  ++++ R +D+   ++LED+LI SD+G 
Sbjct: 126 SPEPAESATDSNTQQYEKGLEKSRSSFGQKLNALLANFRHVDESFFDDLEDMLIESDVGF 185

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS------HRPHVI 114
             + +I +EL  +   ++    + + +V  ++ K++    +  N + S        P VI
Sbjct: 186 ETSMRIADELRDEVKLQNAKNPKDVQNV--IVKKLIDMYDQAGNGENSAINMAKSGPTVI 243

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + VGVNGVGKTT IGK++K   D G KV+LAA DTFR+ AI+QL +WA+R   D V  + 
Sbjct: 244 MFVGVNGVGKTTTIGKMAKMYKDQGKKVVLAAADTFRAGAIEQLNVWAERDGVDIVKGKA 303

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            SD A++ Y+A  +A+ +  D+L++DTAGRL N   LM  + KM ++L R  P APH VL
Sbjct: 304 KSDPASVVYDAVVKARKEDYDILMVDTAGRLQNKVNLMNELSKMKKILTREIPEAPHEVL 363

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNA+ Q +MF      +G+++TK+DGTARGG ++ I     +PV ++G+GE 
Sbjct: 364 LVLDATTGQNAMTQAKMFKETTDVSGIVLTKLDGTARGGIVLAIRSELHLPVKYVGLGEQ 423

Query: 295 INDLEPFVAKDF 306
           + DL+PF   DF
Sbjct: 424 VGDLKPFDPNDF 435


>gi|290968347|ref|ZP_06559888.1| signal recognition particle-docking protein FtsY [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781622|gb|EFD94209.1| signal recognition particle-docking protein FtsY [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 313

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/302 (41%), Positives = 184/302 (60%), Gaps = 4/302 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL KG   T   L + I  ++    ++DD + E+LE +L+  D+G+   + I+ +
Sbjct: 1   MGFFAKLKKGLEKTKTSLIQNIETVVCGYAKIDDDMYEDLEAVLLTGDVGLETTEYILRQ 60

Query: 70  LLTKRYAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           + T    K++   + V+  V   I K+L     P          VI +VGVNGVGKTT I
Sbjct: 61  IRTGVKTKEIQEGKDVVPYVQRCITKLLEENDTPV--PTREGTEVIFIVGVNGVGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G  V++AAGDTFR+AA +QL IWADR     +  + G+DAAA+ ++A   
Sbjct: 119 GKLANYYRQQGKSVLVAAGDTFRAAASEQLTIWADRIGVPIIKHQEGADAAAVIFDATAS 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +D++++DTAGRLH  + LM  + KM RV  R    APH  L VLDATTGQNA+ Q
Sbjct: 179 AKARGIDIVLVDTAGRLHTKANLMEELRKMARVAGRNIAGAPHETLLVLDATTGQNAVSQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F      TG+++TK+DGTA+GG ++ +  T  +PV ++GVGEGI DL+PF A DF+A
Sbjct: 239 AKLFGETVPLTGVVLTKLDGTAKGGIILSVKRTLGVPVRWVGVGEGIEDLQPFSAVDFAA 298

Query: 309 VI 310
            +
Sbjct: 299 AL 300


>gi|167561478|ref|ZP_02354394.1| signal recognition particle-docking protein FtsY [Burkholderia
           oklahomensis EO147]
          Length = 434

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/302 (42%), Positives = 183/302 (60%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L  G A TS      IT++  + ++D+ + EELE  L+ SD G+   + +++ L 
Sbjct: 139 SWLARLKSGLAKTS----SSITNVFVNTKIDEALYEELETALLMSDAGIDATEHLLDALR 194

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+  +L PL K      +  P V+++ GVNG GKTT IGK
Sbjct: 195 EKVRTGRLTDPQQVKDALRGLLVDLLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 253

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 254 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVSAAR 312

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQN L QV+
Sbjct: 313 ARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNGLAQVK 372

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++F+  +
Sbjct: 373 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFADAL 432

Query: 311 TG 312
            G
Sbjct: 433 LG 434


>gi|309379872|emb|CBX21648.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 487

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 186/306 (60%), Gaps = 5/306 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI  D+G+   + +++++
Sbjct: 186 LSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEATEYLMKDV 245

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 246 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 305

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 306 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 364

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 365 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 424

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF   D  A 
Sbjct: 425 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPF---DACAF 481

Query: 310 ITGCLD 315
           +   LD
Sbjct: 482 VDALLD 487


>gi|254805877|ref|YP_003084098.1| signal recognition particle protein [Neisseria meningitidis
           alpha14]
 gi|254669419|emb|CBA08634.1| signal recognition particle protein [Neisseria meningitidis
           alpha14]
          Length = 421

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 120/303 (39%), Positives = 186/303 (61%), Gaps = 14/303 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
                 +D    + L D +EL       ++ ++ PL KP     +  P VI++ G+NG G
Sbjct: 180 ------RDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAG 233

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ +
Sbjct: 234 KTTSIGKLAKYFQAHGKSVLLAAGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCF 292

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQ
Sbjct: 293 DAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQ 352

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A
Sbjct: 353 NAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDA 412

Query: 304 KDF 306
           + F
Sbjct: 413 RAF 415


>gi|329118182|ref|ZP_08246892.1| cell division protein FtsY [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465603|gb|EGF11878.1| cell division protein FtsY [Neisseria bacilliformis ATCC BAA-1200]
          Length = 470

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 125/305 (40%), Positives = 188/305 (61%), Gaps = 9/305 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W  +L +G   +  K+ + +  +    ++DD + EELE +L+ SD+G+   + I+E++  
Sbjct: 170 WAARLKQGLGKSRDKMAKSLAGVFGGGKIDDELYEELETVLLTSDMGIEATEHIMEDVRR 229

Query: 73  KRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +   K +S    ++R L    E ++++L PL +P     + +P VI++ G+NG GKTT I
Sbjct: 230 RVSLKGLSDSGQLRRAL---KESLYELLAPLEQPLEIPDNGQPFVIMMAGINGAGKTTSI 286

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K     G  V+LAAGDTFR+AA +QL+ W  R     V S+   D+AA+ Y+A + 
Sbjct: 287 GKLAKYFQQQGKTVILAAGDTFRAAAREQLQEWGARNGV-TVVSQAKGDSAAVCYDAVES 345

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A++ D+++ DTAGRL     LM  I K+ RVL++    APH ++ VLDA  GQNA+ Q
Sbjct: 346 AKARRTDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMSDAPHEIIVVLDANIGQNAVNQ 405

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-S 307
           V  F    G TGLI+TK+DGTA+GG L  +     IPV ++GVGEGI+DL PF A+ F  
Sbjct: 406 VIAFDDALGVTGLIVTKLDGTAKGGVLAALAAARPIPVRYIGVGEGIDDLRPFNARAFVD 465

Query: 308 AVITG 312
           A+I G
Sbjct: 466 ALIDG 470


>gi|315652047|ref|ZP_07905048.1| cell division protein FtsY [Eubacterium saburreum DSM 3986]
 gi|315485694|gb|EFU76075.1| cell division protein FtsY [Eubacterium saburreum DSM 3986]
          Length = 309

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 121/299 (40%), Positives = 179/299 (59%), Gaps = 10/299 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G   T   +  GI ++ +    +D+   EELE+ LI  DIG+  +  I+EEL 
Sbjct: 8   FFSRLVEGLTKTRNAVVSGIENVFLGYEVIDEDFYEELEETLIMGDIGIRASTDIIEELR 67

Query: 72  TK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            +    R       + VL D      K  M L +   ++F +R  V+ V+GVNGVGKTT 
Sbjct: 68  KRVKEERLNSPAQCREVLIDTI----KRKMDLGENA-YEFENRKSVVFVIGVNGVGKTTS 122

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +GKL+ ++ + G KV++ A DTFR+AAI+QL+ W  R   D +    GSD  A+ ++A K
Sbjct: 123 VGKLASQLKNDGKKVLVVAADTFRAAAIEQLEEWTKRAGVDIIAQNEGSDPGAVVFDACK 182

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DV+I+DTAGRLHN   LM  + K+ ++++R  P A    L VLD TTGQNAL 
Sbjct: 183 AAKARNTDVMIVDTAGRLHNKKNLMEELKKINKIIEREYPDAYRETLVVLDGTTGQNALE 242

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q   F+  A  TG+I+TK+DG+A+GG  + I     IPV ++GVGE I+DL+ F +K+F
Sbjct: 243 QARAFNEAANITGIILTKLDGSAKGGIAVAIQAELSIPVKYIGVGEKIDDLQKFNSKEF 301


>gi|305667746|ref|YP_003864033.1| putative recognition particle-docking protein [Maribacter sp.
           HTCC2170]
 gi|88707583|gb|EAQ99825.1| putative recognition particle-docking protein [Maribacter sp.
           HTCC2170]
          Length = 318

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 123/300 (41%), Positives = 181/300 (60%), Gaps = 19/300 (6%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  KL+K  A  S              ++DD V + LE++L+ SD+GV    KI+E + 
Sbjct: 26  SFFSKLSKAVAGKS--------------KVDDDVLDNLEEVLVTSDVGVDTTLKIIERIE 71

Query: 72  TK----RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +    +Y     + ++L + ++ L+ +  +     ++     +P+VI+VVGVNGVGKTT
Sbjct: 72  ARVSEDKYMGTDELNKILREEIAGLLSETNIGEETEYSIPADKKPYVIMVVGVNGVGKTT 131

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ +    GLKV+L A DTFR+AAIDQL++WADR     V  ++GSD A++A++  
Sbjct: 132 TIGKLAYQFKKQGLKVVLGAADTFRAAAIDQLQVWADRVDVPIVKQKMGSDPASVAFDTL 191

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A  +  DV+IIDTAGRLHN   LM  + K+ RV++++    PH VL VLD +TGQNA 
Sbjct: 192 SSAVTQDADVVIIDTAGRLHNKVNLMNELTKVKRVMQKVVDDTPHDVLLVLDGSTGQNAF 251

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F      T L +TK+DGTA+GG +I I    +IPV ++GVGEGI DL+ F   +F
Sbjct: 252 EQAKQFTKATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEF 311


>gi|319938300|ref|ZP_08012697.1| signal recognition particle-docking protein ftsY [Coprobacillus sp.
           29_1]
 gi|319806593|gb|EFW03251.1| signal recognition particle-docking protein ftsY [Coprobacillus sp.
           29_1]
          Length = 326

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/320 (40%), Positives = 192/320 (60%), Gaps = 16/320 (5%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A ++  ++  L K  +S S K+ E        R +DD   EELE++LI SD+GV++   I
Sbjct: 16  AKQNDKYVAGLDKSSSSFSAKINELAA---RYREIDDDYFEELENVLIMSDVGVSMVMTI 72

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLM------PLSKPFNWDFSHRPHVILVVGVN 120
           ++E+  +   +++   +++ D+  +I KM +       ++   N+D      VIL+VGVN
Sbjct: 73  IDEIKKEVRLQNIKNPQMINDI--IIDKMFVIYANDSYMTTKINYD-DQDLTVILMVGVN 129

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT I KL+  M   G  VM+AAGDTFR+ AIDQL +WA+R   + +  + G D ++
Sbjct: 130 GAGKTTTIAKLAHMMLSEGKTVMVAAGDTFRAGAIDQLAVWAERLGIECIKGKEGGDPSS 189

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A  QA+ K VDVLI DTAGRL N   LM  + KM R++KR+ P  P   L V+DAT
Sbjct: 190 VVFDALNQAKDKGVDVLICDTAGRLQNKVNLMNELEKMNRIIKRVVPSGPQETLLVIDAT 249

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN + Q + F  +   TG+++TKMDGTA+GG ++ I  T  IPV F+G+GE ++DL+ 
Sbjct: 250 TGQNGVSQAQEFSKITDITGIVLTKMDGTAKGGIVLSIKDTLNIPVKFMGLGESMDDLQE 309

Query: 301 FVAKDFSAVITG-CLDYGEE 319
           F   D    I G C +  EE
Sbjct: 310 F---DLEQYIYGLCKNLMEE 326


>gi|108760294|ref|YP_633872.1| signal recognition particle-docking protein FtsY [Myxococcus
           xanthus DK 1622]
 gi|108464174|gb|ABF89359.1| signal recognition particle-docking protein FtsY [Myxococcus
           xanthus DK 1622]
          Length = 463

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 121/274 (44%), Positives = 177/274 (64%), Gaps = 8/274 (2%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIH 93
             R++D+ V  ELE++L  +DIGV  A  +VE   E L +   KD   +R+   + + + 
Sbjct: 188 QQRQVDESVLAELEEILFTADIGVRTANHLVEVAREKLKRNELKDP--ERIKGLIRDEVA 245

Query: 94  KML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           ++  +P+  P + +    PHVI+VVGVNG GKTT IGKL+ K++  G KV+LAAGDTFR+
Sbjct: 246 RICDLPV--PRSLEGGGPPHVIMVVGVNGAGKTTTIGKLASKLTSEGKKVVLAAGDTFRA 303

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA +QL +WA+R  A  V    G D +A+ +EA K+A+ +  DV+I DTAGRLH  + LM
Sbjct: 304 AATEQLDVWAERAQAQLVKGAEGGDPSAVIFEAVKKAKEEGADVIIADTAGRLHTKAPLM 363

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+ RV+ +  P APH VL VLD+T GQNA++Q + FH   G + + +TK+DGTA+G
Sbjct: 364 EELKKVKRVMDKALPGAPHEVLLVLDSTNGQNAIQQAKQFHEAVGVSAIALTKLDGTAKG 423

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G +I I    K+PV ++GVGE + DL  F  ++F
Sbjct: 424 GVVIGICDELKLPVVWVGVGEKVADLRRFEPREF 457


>gi|325103016|ref|YP_004272670.1| signal recognition particle-docking protein FtsY [Pedobacter
           saltans DSM 12145]
 gi|324971864|gb|ADY50848.1| signal recognition particle-docking protein FtsY [Pedobacter
           saltans DSM 12145]
          Length = 321

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 116/277 (41%), Positives = 176/277 (63%), Gaps = 6/277 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYD-VS 89
           +I    +DD V ++LE++L+ SD+GV    KI+E +  +    +Y     + ++L + + 
Sbjct: 39  VIGKSTVDDEVLDDLEEILVTSDVGVTTTLKIIERIENRVAKNKYLNTSELNQILREEIQ 98

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            L+ +      + FN+    +P+VI+VVGVNGVGKTT IGKL+ ++ +AG KV+L A DT
Sbjct: 99  ALLEENNSADFEQFNYS-GKKPYVIMVVGVNGVGKTTTIGKLAYQLREAGNKVVLGAADT 157

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AA+DQ+K+W +R     V   + +D A++A++  + A A   D+ IIDTAGRLHN  
Sbjct: 158 FRAAAVDQIKLWGERVDVRVVSQGMNADPASVAFDTLQSAVANDEDIAIIDTAGRLHNKV 217

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + K+  V++++ P APH +L VLDA+TGQNA+ Q + F        L +TK+DGT
Sbjct: 218 GLMNELTKIKNVMQKVVPGAPHEILLVLDASTGQNAIEQCKQFTQATDVNALALTKLDGT 277

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A+GG +I I    KIPV ++GVGE + DL+ F  KDF
Sbjct: 278 AKGGVVIGISDQFKIPVKYIGVGEKMTDLQLFNKKDF 314


>gi|296314873|ref|ZP_06864814.1| signal recognition particle-docking protein FtsY [Neisseria
           polysaccharea ATCC 43768]
 gi|296838320|gb|EFH22258.1| signal recognition particle-docking protein FtsY [Neisseria
           polysaccharea ATCC 43768]
          Length = 469

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 123/302 (40%), Positives = 183/302 (60%), Gaps = 14/302 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  +L +G   +  K+ + +  +    ++D+ + EELE +LI  D+G+        E L
Sbjct: 169 SWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEAT-----EYL 223

Query: 72  TKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            K     VS+ + L D +EL       ++ ++ PL KP     +  P VI++ G+NG GK
Sbjct: 224 MKDVRDRVSL-KGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGK 282

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++
Sbjct: 283 TTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNV-TVISQTTGDSAAVCFD 341

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQN
Sbjct: 342 AVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPDAPHEIIVVLDANIGQN 401

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+
Sbjct: 402 AVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDAR 461

Query: 305 DF 306
            F
Sbjct: 462 AF 463


>gi|325145480|gb|EGC67754.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis M01-240013]
          Length = 421

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 120/303 (39%), Positives = 186/303 (61%), Gaps = 14/303 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
                 +D    + L D +EL       ++ ++ PL KP     +  P VI++ G+NG G
Sbjct: 180 ------RDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAG 233

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ +
Sbjct: 234 KTTSIGKLAKYFQAHGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCF 292

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQ
Sbjct: 293 DAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQ 352

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A
Sbjct: 353 NAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDA 412

Query: 304 KDF 306
           + F
Sbjct: 413 RAF 415


>gi|198274635|ref|ZP_03207167.1| hypothetical protein BACPLE_00787 [Bacteroides plebeius DSM 17135]
 gi|198272082|gb|EDY96351.1| hypothetical protein BACPLE_00787 [Bacteroides plebeius DSM 17135]
          Length = 321

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 183/297 (61%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ + T R 
Sbjct: 15  LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRIET-RV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129
           AKD  V+ Q +   + E I  +LM  +     DF       P+VI+VVGVNGVGKTT IG
Sbjct: 74  AKDKYVNTQELNNILREEIAALLMENNTVDAADFDVPQDKTPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KV L A DTFR+AA++QL IW +R     +  ++G+D A++A++    A
Sbjct: 134 KLAYQFKKAGKKVYLGAADTFRAAAVEQLDIWGERVGVPVIKQKMGADPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +TGQNA  Q 
Sbjct: 194 KANNADVVIIDTAGRLHNKIGLMNELTKIKNVMKKVVPDAPHEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F  ++F
Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQIFRRREF 310


>gi|172061768|ref|YP_001809420.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria MC40-6]
 gi|171994285|gb|ACB65204.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria MC40-6]
          Length = 386

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 130/305 (42%), Positives = 185/305 (60%), Gaps = 13/305 (4%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   + +
Sbjct: 86  ASAKKSWLTRLKTGLAKTG----SSITGVFVNTKIDEDLYEELEAALLMSDAGVDATEYL 141

Query: 67  V----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +    E++ T R      V+  L+D   L+ ++L PL K      + +P V+++ GVNG 
Sbjct: 142 LGALREKVKTGRLTDPQQVKSALHD---LLVELLKPLEKSLMLGRA-QPLVMMITGVNGA 197

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ 
Sbjct: 198 GKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVI 256

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TG
Sbjct: 257 FDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTG 316

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF 
Sbjct: 317 QNALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFS 376

Query: 303 AKDFS 307
           A +F+
Sbjct: 377 AVEFA 381


>gi|239906646|ref|YP_002953387.1| cell division protein FtsY [Desulfovibrio magneticus RS-1]
 gi|239796512|dbj|BAH75501.1| cell division protein FtsY [Desulfovibrio magneticus RS-1]
          Length = 434

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 122/299 (40%), Positives = 186/299 (62%), Gaps = 3/299 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL++G A T  ++ + I  ++     +D+   EELE++LI +D+G   A K+++ L  K 
Sbjct: 137 KLSEGLAKTKEQIVKRIDGLLGRHAVIDEAFWEELEEILIMADVGFEPAAKLLDALRDKV 196

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             +  +   V  D+  L  ++      P      + P V++++GVNGVGKTT I KL+ +
Sbjct: 197 RKRGTTDPAVFKDI--LREELAEIFRTPKTIKAINPPEVVMMIGVNGVGKTTTIAKLAHR 254

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G KV++AAGDTFR+AAI+QL IWA R  ADF      +D AA+A+EA  +A A+  
Sbjct: 255 DMMRGKKVLIAAGDTFRAAAIEQLHIWAKRVGADFYSKGANADPAAVAFEAMDKALAEGY 314

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+ +DTAGRLH  + LM  + K+ RV+ +  P APH  + VLDATTGQNAL QV++F  
Sbjct: 315 DVVYLDTAGRLHTKTNLMEELRKIHRVVGKKHPGAPHRSVLVLDATTGQNALSQVKLFGE 374

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            AG   +I+TK+DGTA+GG ++ I ++  +P+ ++G+GE + DL PF  +DF+  + G 
Sbjct: 375 AAGVDEIILTKLDGTAKGGVVVGIALSFSVPITYVGLGEKMEDLRPFDGQDFAQALLGV 433


>gi|319892233|ref|YP_004149108.1| Signal recognition particle receptor protein FtsY, alpha subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161929|gb|ADV05472.1| Signal recognition particle receptor protein FtsY, alpha subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323464670|gb|ADX76823.1| cell division protein FtsY, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 399

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 123/299 (41%), Positives = 186/299 (62%), Gaps = 12/299 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K  +G   +    +  + ++++  R++D+   E LE++LI++D+G     ++V+EL  + 
Sbjct: 80  KFREGLEKSRENFQNQLNNLLAHYRKVDEDFFEALEEMLIQADVGFNTVMELVDELRMEA 139

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             ++++      D+ E I + ++ +       S+  N +   R +VIL+VGVNGVGKTT 
Sbjct: 140 KRRNITETE---DLREAIVEKIVEIYQQDDEKSEEMNIE-DGRLNVILMVGVNGVGKTTT 195

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G KVMLAAGDTFR+ AI+QL++W  R   D +    GSD AA+ Y+A  
Sbjct: 196 IGKLAHRYQAQGKKVMLAAGDTFRAGAIEQLEVWGQRVGVDVIRQGEGSDPAAVMYDAIN 255

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K VD+LI DTAGRL N   LM  + K+ RV+ R  P APH VL  LDATTGQNAL 
Sbjct: 256 AAKNKGVDILICDTAGRLQNKQNLMNELEKVKRVISRSVPDAPHEVLLALDATTGQNALA 315

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q + F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+PF A+ +
Sbjct: 316 QAKAFKEVTDVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNAESY 374


>gi|332704186|ref|ZP_08424274.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554335|gb|EGJ51379.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 476

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 121/301 (40%), Positives = 188/301 (62%), Gaps = 7/301 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73
           KL++G   T  ++ + I  +++S  ++D+   EELE++LI +D+G   + K++E L  + 
Sbjct: 180 KLSEGLEKTKEQISKRIEGLMASHSKIDESFWEELEEILIMADVGFEPSMKLIERLRDRV 239

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           R A      R      E + + L  + K P      + P V++++GVNGVGKTT I KL+
Sbjct: 240 RKAGTDDPARF----KEFLREELETIFKAPKRITAINPPEVVMMIGVNGVGKTTTIAKLA 295

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +    G +V++AAGDTFR+AAI+QL+IWA R  A F     G+D AA+A+EA  +A ++
Sbjct: 296 YRAQMQGRRVLIAAGDTFRAAAIEQLEIWAKRVGAGFYSKGAGADPAAVAFEAVDKAVSE 355

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D+L++DTAGRLH    LM  + K+ RV  +  P +PH  + V+DATTGQNAL+Q ++F
Sbjct: 356 GYDLLLLDTAGRLHTKINLMEELKKIQRVCGKKHPGSPHRSILVVDATTGQNALQQAKLF 415

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
               G   +I+TK+DGTA+GG ++ I + H +P+ F+G+GE + DL PF  KDF+  + G
Sbjct: 416 GEAVGVDEIILTKLDGTAKGGIVVAIALEHALPITFVGLGEKMEDLRPFNGKDFAQALLG 475

Query: 313 C 313
            
Sbjct: 476 T 476


>gi|150021431|ref|YP_001306785.1| signal recognition particle-docking protein FtsY [Thermosipho
           melanesiensis BI429]
 gi|149793952|gb|ABR31400.1| signal recognition particle-docking protein FtsY [Thermosipho
           melanesiensis BI429]
          Length = 295

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 196/304 (64%), Gaps = 12/304 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  K  KG   T       I +++S ++LD+ V+EE+E+LLI SD+GV   + I++++
Sbjct: 1   MGFFEKFKKGLQKTRETFFGKIKEVLSGKKLDEEVKEEIEELLILSDVGVEATEYIIKKI 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                 ++ S +    D  E + K+L+  LS     +   +P VI +VGVNG GKTT  G
Sbjct: 61  ------EESSGE----DAYETLKKVLVEMLSDNTELNLFEKPTVINMVGVNGSGKTTTAG 110

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+   S  G  V+LAA DTFR+AAIDQLK+W +RT++  +  + G+D+AA+A++A   A
Sbjct: 111 KLASYFSKNGKSVVLAACDTFRAAAIDQLKVWGERTNSTVIAHQEGADSAAVAFDAVNHA 170

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            +K  D++I+DTAGRLH    LM  + K+ RV+K+    APH +L V+DA TGQN L+Q 
Sbjct: 171 ISKNKDIVILDTAGRLHTKKNLMEELRKINRVIKKKLESAPHEILLVIDAVTGQNGLQQA 230

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-SA 308
           ++F      TG+++TK+DGTA+GG  I IV    IP+ F+G+GEG++DL+PF A+DF +A
Sbjct: 231 KIFKEFVNITGIVLTKLDGTAKGGIAIAIVKELGIPIKFVGLGEGVDDLKPFDAEDFVNA 290

Query: 309 VITG 312
           ++ G
Sbjct: 291 LLEG 294


>gi|258405800|ref|YP_003198542.1| signal recognition particle-docking protein FtsY [Desulfohalobium
           retbaense DSM 5692]
 gi|257798027|gb|ACV68964.1| signal recognition particle-docking protein FtsY [Desulfohalobium
           retbaense DSM 5692]
          Length = 444

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 178/301 (59%), Gaps = 13/301 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           KL+ G   T  +L + +  ++  +++ DD   E+LE++LI SD+G      ++E L   +
Sbjct: 148 KLSSGLTKTKEQLSKQVDQLLQLNKQFDDAFWEDLEEILIMSDVGFKATTTLLERLRDRV 207

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            +    D    + L+   EL      P    KP        P V+L++GVNGVGKTT I 
Sbjct: 208 RQEGCNDSETFKTLFK-EELAALFPQPAKRIKP------QPPEVVLMIGVNGVGKTTTIA 260

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVM+AAGDTFR+AAI+QL+IW+ R  A F      SD A++AYEA   A
Sbjct: 261 KLAHRAHMQGQKVMVAAGDTFRAAAIEQLEIWSKRVGAGFYAKAPFSDPASVAYEALDTA 320

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA+  D L +DTAGRLH N  LM  + K+ RVL +  P APH  + VLDATTGQNAL Q 
Sbjct: 321 QAEGYDTLFVDTAGRLHTNVDLMEELRKIKRVLAKKHPGAPHRTILVLDATTGQNALSQT 380

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F        +++TK+DGTA+GG ++ + + + IP+ F+G+GE + DL PF   DF+  
Sbjct: 381 KLFAKDMDIDEIVLTKLDGTAKGGVVVAVSLEYGIPITFIGLGEKMEDLRPFSGTDFAQA 440

Query: 310 I 310
           +
Sbjct: 441 L 441


>gi|302874775|ref|YP_003843408.1| signal recognition particle-docking protein FtsY [Clostridium
           cellulovorans 743B]
 gi|307690609|ref|ZP_07633055.1| signal recognition particle-docking protein FtsY [Clostridium
           cellulovorans 743B]
 gi|302577632|gb|ADL51644.1| signal recognition particle-docking protein FtsY [Clostridium
           cellulovorans 743B]
          Length = 303

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 120/297 (40%), Positives = 188/297 (63%), Gaps = 6/297 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  KL  G   T   L E I  ++ +   +D+ + +ELE++LI +D+GV  +  I++EL 
Sbjct: 5   FFDKLKNGLNKTKENLTEKINVMLGNYISIDEDLFDELEEILITADVGVDTSMFIIDEL- 63

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKTTVIG 129
            K+  K+  +  V  +V   + ++++ +      DF+ +  P V+LV+GVNG GKTT IG
Sbjct: 64  -KKKIKEERINEV-SEVYPALKRVIVEILGSTREDFTKQDTPKVMLVIGVNGAGKTTSIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+S K+  +G  V++ A DTFR+AAIDQL++W+ R   + +  + GSD AA+ ++  + A
Sbjct: 122 KMSAKLKKSGYNVLMIAADTFRAAAIDQLEVWSKRAEVEIIKHQEGSDPAAVVFDGVQAA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ VD+L+ DTAGRLHN   LM  +GK+ R+++R   HA    L VLDA+TGQNA+ Q 
Sbjct: 182 KARNVDILLCDTAGRLHNKKNLMNELGKINRIIEREYGHAEKETLLVLDASTGQNAVSQA 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F+ +    G+I+TK+DGTA+GG +I I     IPV  +GVGE I+DL+ F A +F
Sbjct: 242 KQFNEICKVDGIILTKLDGTAKGGVVISIKHELNIPVKLIGVGESIDDLQEFDASEF 298


>gi|86133831|ref|ZP_01052413.1| signal recognition particle-docking protein FtsY [Polaribacter sp.
           MED152]
 gi|85820694|gb|EAQ41841.1| signal recognition particle-docking protein FtsY [Polaribacter sp.
           MED152]
          Length = 323

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 123/279 (44%), Positives = 174/279 (62%), Gaps = 13/279 (4%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM 97
           ++DD V + LE++L+ SD+GV    K+++ +   R AKD  V    +   + E I  +L 
Sbjct: 40  KVDDDVLDNLEEVLVASDVGVNTTLKVIDRI-EARVAKDKYVGTDELNAILREEIAGLLS 98

Query: 98  PLSKPFNWDFS----------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             +     DF+            P+V++VVGVNGVGKTT IGKL+ +    GLKV+L A 
Sbjct: 99  ETNVGNETDFTIPEIPKKEGKKMPYVLMVVGVNGVGKTTTIGKLASQFKKQGLKVVLGAA 158

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAIDQL++WADRT    +  E+GSD A++A++    A  +  DV+IIDTAGRLHN
Sbjct: 159 DTFRAAAIDQLQVWADRTDVPIIRQEMGSDPASVAFDTLTSAVKQDADVVIIDTAGRLHN 218

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
              LM  + K+ RV++++   APH VL VLD +TGQNA  Q + F      T L +TK+D
Sbjct: 219 KVNLMNELTKIKRVMQKVVSDAPHDVLLVLDGSTGQNAFEQAKQFTKATEVTSLAVTKLD 278

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GTA+GG +I I    +IPV ++GVGEGI+DL+ F   +F
Sbjct: 279 GTAKGGVVIGISDQFQIPVKYIGVGEGIDDLQVFNKVEF 317


>gi|115352920|ref|YP_774759.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria AMMD]
 gi|115282908|gb|ABI88425.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria AMMD]
          Length = 386

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 130/305 (42%), Positives = 185/305 (60%), Gaps = 13/305 (4%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   + +
Sbjct: 86  ASAKKSWLTRLKTGLAKTG----SSITGVFVNTKIDEDLYEELEAALLMSDAGVDATEYL 141

Query: 67  V----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +    E++ T R      V+  L+D   L+ ++L PL K      + +P V+++ GVNG 
Sbjct: 142 LGALREKVKTGRLTDPQQVKSALHD---LLVELLKPLEKSLMLGRA-QPLVMMITGVNGA 197

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ 
Sbjct: 198 GKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVI 256

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TG
Sbjct: 257 FDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTG 316

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF 
Sbjct: 317 QNALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFN 376

Query: 303 AKDFS 307
           A +F+
Sbjct: 377 AVEFA 381


>gi|304316936|ref|YP_003852081.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778438|gb|ADL68997.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 319

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 128/294 (43%), Positives = 188/294 (63%), Gaps = 5/294 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +KL  G   T       I  I+S  R++DD + EELE++LI +D+GV   +KI++ +  K
Sbjct: 23  QKLKDGLTRTRNNFTAKIDGILSLGRKIDDELFEELEEILILADVGVITTEKIIDNIKIK 82

Query: 74  RYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              + +     + D+ +E I+ ++    KPFN      P +IL+VGVNGVGKTT IGKL+
Sbjct: 83  AKEQKIKEADKIKDLLAEEIYNIMDANEKPFNI---TSPAMILIVGVNGVGKTTTIGKLA 139

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            K  + G KV+L A DTFR+AAIDQL++WA R + + +  E GSD A++ ++  K A+A+
Sbjct: 140 NKYKNEGKKVLLVAADTFRAAAIDQLEVWASRNNCEIIRHEEGSDPASVVFDGIKAAKAR 199

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D+++ DTAGRLHN   LM  + K+ RV +R   ++    L VLDATTGQNA++Q ++F
Sbjct: 200 GADIILCDTAGRLHNKKNLMEELKKIYRVAQREFDNSNIETLLVLDATTGQNAVQQAKIF 259

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                 TG+I+TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F ++ F
Sbjct: 260 KEAVNVTGIILTKLDGTAKGGIVISIKSELDIPVRFIGVGEGIDDLQEFDSEKF 313


>gi|260592451|ref|ZP_05857909.1| signal recognition particle-docking protein FtsY [Prevotella
           veroralis F0319]
 gi|260535497|gb|EEX18114.1| signal recognition particle-docking protein FtsY [Prevotella
           veroralis F0319]
          Length = 316

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 181/296 (61%), Gaps = 6/296 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIV----EELL 71
           L KG   T   +   +T  ++ + ++DD V + LE++L+ SD+GV    KI+    E + 
Sbjct: 15  LDKGLEKTKQNVFTKLTRAVAGKSKVDDEVLDNLEEILVSSDVGVDTTIKIIHRIEERVA 74

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +Y     +  +L  +++EL+ +     S  +       P+VILVVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTSELNEILKGEITELLTENNNGDSVEWTLPEESHPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV L A DTFR+AA++Q++IW DR     +  ++G+D A++A++  + A+
Sbjct: 135 LAYQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVIKQQMGADPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +TGQNA  Q  
Sbjct: 195 ANGADVVIIDTAGRLHNKVGLMNELKKIKDVMKKVVPEAPHEVLLVLDGSTGQNAFEQAR 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F    F
Sbjct: 255 QFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQIFDKAQF 310


>gi|167771629|ref|ZP_02443682.1| hypothetical protein ANACOL_03001 [Anaerotruncus colihominis DSM
           17241]
 gi|167666269|gb|EDS10399.1| hypothetical protein ANACOL_03001 [Anaerotruncus colihominis DSM
           17241]
          Length = 309

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 131/300 (43%), Positives = 187/300 (62%), Gaps = 9/300 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G   T   +   +  I++S  ++D+ + EELE+ LI SD+GVA + +I   
Sbjct: 1   MGFFGRLAEGLKKTRESMARKVDAIVNSFTKIDEELFEELEETLIMSDVGVATSAEICRR 60

Query: 70  L---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           L   + +R   D +  R L  + E+I  ML   +       S +P ++LV+GVNGVGKTT
Sbjct: 61  LRAAVKQRGVTDAAEVREL--IKEIIADML---AGGEALSISTKPSIVLVIGVNGVGKTT 115

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+  +   G +V+L A DTFR+AAIDQL++WADR   + V    G+D AA+ ++A 
Sbjct: 116 TIGKLAASLKAQGKQVLLGAADTFRAAAIDQLQVWADRAGVEMVRQSEGADPAAVVFDAI 175

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
              +A+ VDV+I DTAGRLHN   LM  + K+ RV++R  P     VL VLDATTGQNAL
Sbjct: 176 TAGRARGVDVIICDTAGRLHNKKNLMDELSKISRVIQREAPGCDVEVLLVLDATTGQNAL 235

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F   AG TG+I+TK+DGTARGG +I I    ++P+ ++GVGE ++DL PF A DF
Sbjct: 236 NQARQFKEAAGITGIILTKLDGTARGGVVIGIRQELEVPIKYIGVGEQVDDLRPFNAADF 295


>gi|15838508|ref|NP_299196.1| cell division protein [Xylella fastidiosa 9a5c]
 gi|9107008|gb|AAF84716.1|AE004011_1 cell division protein [Xylella fastidiosa 9a5c]
          Length = 397

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 118/269 (43%), Positives = 171/269 (63%), Gaps = 2/269 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMP 98
           RLD+ + +E+E  LI +D+GV+    +V+ L  +  A++ + +Q +L  +   +  +L P
Sbjct: 117 RLDENLLDEIETALITADVGVSTTNALVDGLRKRMKAREFADIQTLLAALRNELIAILRP 176

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP        P V LVVGVNGVGKTT IGKL+K     G  +MLAAGDTFR+AA+ QL
Sbjct: 177 VSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQL 236

Query: 159 KIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           + W +R S   +  +   +DAA++ Y+A + A+A+  +VLI DTAGRLH    LM  + K
Sbjct: 237 QAWGERNSITVIAQKGPNADAASVVYDALQAAKARSTEVLIADTAGRLHTQIGLMNELSK 296

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RVL +LD  APH VL V+D TTGQNAL Q+  FHA    TGL++TK+DGTA+GG +  
Sbjct: 297 IRRVLGKLDSTAPHEVLMVIDGTTGQNALSQLRQFHAAVNVTGLVVTKLDGTAKGGVVFT 356

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +     IP++F+ +GE + D+  F  + F
Sbjct: 357 LAREFGIPIHFISIGEQLEDMHFFDPEAF 385


>gi|218261904|ref|ZP_03476577.1| hypothetical protein PRABACTJOHN_02248 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223698|gb|EEC96348.1| hypothetical protein PRABACTJOHN_02248 [Parabacteroides johnsonii
           DSM 18315]
          Length = 317

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 128/297 (43%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   IT  I+ + ++DD V + LE++LI SD+GV    KI+  +   R 
Sbjct: 15  LDKGLSKTKENVFSKITRAIAGKSKVDDEVLDNLEEVLITSDVGVDTTLKIISRI-EDRV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A+D  V+   +   + E I  +L        + F      +P+VI+VVGVNGVGKTT IG
Sbjct: 74  ARDKYVTTSELTAILREEIASLLTENHTEDLESFTVPEDKKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW++R     V  ++GSD A++A++    A
Sbjct: 134 KLAYQFKKAGKNVYLGAADTFRAAAVEQLVIWSERVGVPIVKQKMGSDPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +TGQNA  Q 
Sbjct: 194 KANGADVVIIDTAGRLHNKINLMNELTKIKNVMKKVVPDAPHEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F A      L +TK+DGTA+GG +I I    +IPV ++G+GEGI DL+ F  K+F
Sbjct: 254 KQFTAATEVNALAVTKLDGTAKGGVVIGISDHFRIPVKYIGLGEGIEDLQVFNRKEF 310


>gi|325280250|ref|YP_004252792.1| signal recognition particle-docking protein FtsY [Odoribacter
           splanchnicus DSM 20712]
 gi|324312059|gb|ADY32612.1| signal recognition particle-docking protein FtsY [Odoribacter
           splanchnicus DSM 20712]
          Length = 330

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 121/277 (43%), Positives = 175/277 (63%), Gaps = 5/277 (1%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVL-YDVS 89
           ++   ++DD V + LE++LI SD+GV    +I+E +  +    +Y     + RVL  ++ 
Sbjct: 48  VVGKSKVDDEVLDNLEEVLITSDVGVETTVRIIERIEERVQRDKYMGVDELNRVLKEEIV 107

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            L+ +  +  +  F    +  P+VI+VVGVNGVGKTT IGKL+ K  +AG KV+L A DT
Sbjct: 108 ALLKENTVNDAASFELPENGVPYVIMVVGVNGVGKTTTIGKLAYKFKEAGKKVVLGAADT 167

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AA+DQL IWADR     V   +G+D A++AY+   +A+A   DV+IIDTAGRLHN  
Sbjct: 168 FRAAAVDQLVIWADRVGVPIVKQAMGADPASVAYDTLSKAKADGADVVIIDTAGRLHNKI 227

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + K+  V+K++ P AP+ VL VLD +TGQNA  Q + F        L +TK+DGT
Sbjct: 228 NLMNELTKIKNVMKKVLPEAPNEVLLVLDGSTGQNAYEQAKQFTLATEVNALAITKLDGT 287

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A+GG +I I    KIPV ++G+GE I DL+ F  ++F
Sbjct: 288 AKGGVVIGISDQFKIPVKYIGIGEKIEDLQVFNREEF 324


>gi|171320171|ref|ZP_02909233.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria MEX-5]
 gi|171094585|gb|EDT39637.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria MEX-5]
          Length = 386

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/305 (42%), Positives = 184/305 (60%), Gaps = 13/305 (4%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   + +
Sbjct: 86  ASAKKSWLVRLKTGLAKTG----SSITGVFVNTKIDEDLYEELEAALLMSDAGVDATEYL 141

Query: 67  V----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +    E++ T R      V+  L+D   L+ ++L PL K      +  P V+++ GVNG 
Sbjct: 142 LGALREKVRTGRLTDPQQVKSALHD---LLVELLKPLEKSLMLGRAQ-PLVMMITGVNGA 197

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ 
Sbjct: 198 GKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVI 256

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TG
Sbjct: 257 FDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTG 316

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF 
Sbjct: 317 QNALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFS 376

Query: 303 AKDFS 307
           A +F+
Sbjct: 377 AVEFA 381


>gi|170701094|ref|ZP_02892070.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria IOP40-10]
 gi|170133995|gb|EDT02347.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria IOP40-10]
          Length = 386

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/305 (42%), Positives = 185/305 (60%), Gaps = 13/305 (4%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   + +
Sbjct: 86  ASAKKSWLVRLKTGLAKTG----SSITGVFVNTKIDEDLYEELEAALLMSDAGVDATEYL 141

Query: 67  V----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +    E++ T R      V+  L+D   L+ ++L PL K      + +P V+++ GVNG 
Sbjct: 142 LGALREKVKTGRLTDPQQVKSALHD---LLVELLKPLEKSLMLGRA-QPLVMMITGVNGA 197

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  E G D AA+ 
Sbjct: 198 GKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQQESG-DPAAVI 256

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TG
Sbjct: 257 FDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTG 316

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF 
Sbjct: 317 QNALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFS 376

Query: 303 AKDFS 307
           A +F+
Sbjct: 377 AVEFA 381


>gi|325983559|ref|YP_004295961.1| signal recognition particle-docking protein FtsY [Nitrosomonas sp.
           AL212]
 gi|325533078|gb|ADZ27799.1| signal recognition particle-docking protein FtsY [Nitrosomonas sp.
           AL212]
          Length = 341

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 129/315 (40%), Positives = 192/315 (60%), Gaps = 11/315 (3%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           + ++   +ES+S+  KL +G + T   L + ++ +    ++D+ + EELE +L+ SDIGV
Sbjct: 23  VESESPPAESISFASKLKQGLSRTRQNLGQQLSGLFGGGKIDEELYEELETILLTSDIGV 82

Query: 61  AVAQKIVEEL--LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
               +++E L    KR A   S+Q + + + E +  ML PL++  +    H+P VI++ G
Sbjct: 83  NATHQLLENLRKQVKRNALTDSIQ-LKHALKESLIAMLEPLAQSLDTT-RHKPFVIMIAG 140

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--- 175
           VNGVGKTT IGKL+K     G  V+LAAGDTFR+AA +QL  W +R +   +  +     
Sbjct: 141 VNGVGKTTSIGKLAKFFQTQGHSVLLAAGDTFRAAAREQLIAWGERNNVTVIAPDSDPDK 200

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            SD AA+ Y+A   A+A+ +D+++ DTAGRL     LM  I K+ RV+ +  P APH VL
Sbjct: 201 KSDPAAVIYDAVNSAKARGIDIVLADTAGRLTTQLHLMEEIKKVKRVIAKAMPDAPHEVL 260

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV---VTHKIPVYFLGV 291
            VLDA TGQNA+ QV  F      TGLI+TK+DGTA+GG +  I      +   + F+GV
Sbjct: 261 LVLDANTGQNAITQVSAFDDALNVTGLILTKLDGTAKGGVVAAIAGQYPENPPALRFIGV 320

Query: 292 GEGINDLEPFVAKDF 306
           GEG++DL PF A++F
Sbjct: 321 GEGLDDLRPFEAREF 335


>gi|300313432|ref|YP_003777524.1| signal recognition particle GTPase involved in cell division
           protein [Herbaspirillum seropedicae SmR1]
 gi|300076217|gb|ADJ65616.1| signal recognition particle GTPase involved in cell division
           protein [Herbaspirillum seropedicae SmR1]
          Length = 321

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 126/296 (42%), Positives = 181/296 (61%), Gaps = 7/296 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L  G + TS  L    T +    R+D+ + EELE  L+ SD GV   Q +++EL 
Sbjct: 26  SWLSRLKAGLSKTSSNL----TTLFVGARIDEDLYEELESALLVSDAGVEATQWLLDELK 81

Query: 72  TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K  A+ ++   +V   +  L+ ++L PL +P       +P V+++ GVNG GKTT IGK
Sbjct: 82  KKVKAERLTEAAQVRTALRTLLIELLQPLQRPLVLG-RDKPLVMMIAGVNGAGKTTTIGK 140

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G  V+LAAGDTFR+AA +QL +W +R +   +  E G D AA+AY++   AQ
Sbjct: 141 LALHLQAHGQSVLLAAGDTFRAAAREQLAVWGERNNVQVIAQESG-DPAAVAYDSVHSAQ 199

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+   V+++DTAGRL     LM  + K+ RV+ +    APH VL V+D  TGQNAL QV+
Sbjct: 200 ARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIGKAMHSAPHEVLLVIDGNTGQNALAQVK 259

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F    G TGL++TK+DGTA+GG L  I  T  +P+YF+GVGE I DL+ F A +F
Sbjct: 260 AFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEQIEDLQAFNATEF 315


>gi|282881453|ref|ZP_06290127.1| signal recognition particle-docking protein FtsY [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304679|gb|EFA96765.1| signal recognition particle-docking protein FtsY [Prevotella
           timonensis CRIS 5C-B1]
          Length = 316

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 122/278 (43%), Positives = 176/278 (63%), Gaps = 7/278 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELI 92
           +I   ++DD V + LE++LI SD+GV    KI++ +  +R  +D  VS   +   + E I
Sbjct: 34  VIGKSKVDDEVLDNLEEVLITSDVGVDTTLKIIQRI-EERVERDKYVSTSELNAILREEI 92

Query: 93  HKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             +L       N  +S    H+P+VILVVGVNGVGKTT IGKL+ +   AG KV L A D
Sbjct: 93  ATLLAENHSEDNESWSLPTDHQPYVILVVGVNGVGKTTTIGKLAYQFKQAGKKVYLGAAD 152

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R+AA+DQ+ IW +R     +  ++GSD A++A++  + A+A   DV++IDTAGRLHN 
Sbjct: 153 TYRAAAVDQIVIWGERVGVPVIKQQMGSDPASVAFDTLQSAKANHADVVLIDTAGRLHNK 212

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  + K+  V+K++ P AP  VL VLD +TGQNA  Q + F AV   T L +TK+DG
Sbjct: 213 VGLMNELKKIKEVMKKVLPQAPDEVLLVLDGSTGQNAFEQAKQFSAVTQITSLAITKLDG 272

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TA+GG +I I    K+PV ++G+GE + DL+ F  K+F
Sbjct: 273 TAKGGVVIGISDQLKVPVKYIGLGEQMEDLQLFQRKEF 310


>gi|325197349|gb|ADY92805.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis G2136]
 gi|325203177|gb|ADY98630.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis M01-240355]
          Length = 421

 Score =  222 bits (565), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 183/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGE I+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGESIDDLRPFDARAF 415


>gi|229918603|ref|YP_002887249.1| signal recognition particle-docking protein FtsY [Exiguobacterium
           sp. AT1b]
 gi|229470032|gb|ACQ71804.1| signal recognition particle-docking protein FtsY [Exiguobacterium
           sp. AT1b]
          Length = 341

 Score =  222 bits (565), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 124/308 (40%), Positives = 186/308 (60%), Gaps = 8/308 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+ + +    +K T+G   T       + D++   R +D+   +ELEDLLI++D+GV  
Sbjct: 9   EKLTTSTQEVSQKFTEGLTKTRDGFASAVNDLVYRFREVDEDFFDELEDLLIQADVGVTT 68

Query: 63  AQKIVEEL---LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
              +VE+L   + +R  KD V+V+  L    E++   L         +      VIL VG
Sbjct: 69  TMDLVEDLKEEVKRRNLKDPVAVRDALV---EVVANRLQEDESDRELNMQDGLTVILFVG 125

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ ++   G  VMLAAGDTFR+ AI+QL++W +R     +    GSD 
Sbjct: 126 VNGVGKTTTIGKLAHQLKSEGRSVMLAAGDTFRAGAIEQLQVWGERVGVPVIRQTEGSDP 185

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A + A+++ +DVLI DTAGRL N   LM  + K+ RV++R  P+ PH VL  LD
Sbjct: 186 AAVVFDAVQAAKSRNMDVLICDTAGRLQNKVNLMKELEKVKRVIEREVPNGPHEVLLALD 245

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      +G+++TK+DGTA+GG ++ I     IPV ++G+GE I+DL
Sbjct: 246 ATTGQNAMVQAKAFKEATNVSGIVLTKLDGTAKGGIVLAIRNELDIPVKYVGLGEKIDDL 305

Query: 299 EPFVAKDF 306
           + F  + F
Sbjct: 306 QEFDPEQF 313


>gi|331002414|ref|ZP_08325932.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330410230|gb|EGG89664.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 309

 Score =  222 bits (565), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 119/295 (40%), Positives = 179/295 (60%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G   T   +  GI ++ +    +D+   EELE+ LI  DIG+  +  I+EEL 
Sbjct: 8   FFSRLVEGLTKTRNAVVSGIENVFLGYDVIDEDFYEELEETLIMGDIGIRASTDIIEELR 67

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +   + ++      DV     K  M L +   ++F +R  V+ V+GVNGVGKTT +GKL
Sbjct: 68  KRVKDEHLTSPSQCKDVLIETIKQRMDLGENA-YEFENRKSVVFVIGVNGVGKTTSVGKL 126

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++ + G KV++ A DTFR+AAI+QL+ W  R   D +    GSD  A+ ++A K A+A
Sbjct: 127 ASQLKNDGKKVLVVAADTFRAAAIEQLEEWTKRAGVDIIAQNEGSDPGAVVFDACKAAKA 186

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV+I+DTAGRLHN   LM  + K+ ++++R  P A    L VLD TTGQNAL Q  +
Sbjct: 187 RNTDVMIVDTAGRLHNKKNLMEELKKINKIIEREYPDAYRETLVVLDGTTGQNALEQARV 246

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F+  A  TG+I+TK+DG+A+GG  + I     IPV ++GVGE I+DL  F +K+F
Sbjct: 247 FNEAANITGIILTKLDGSAKGGIAVAIQAELSIPVKYVGVGEKIDDLHKFNSKEF 301


>gi|289805648|ref|ZP_06536277.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 242

 Score =  222 bits (565), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 104/213 (48%), Positives = 149/213 (69%), Gaps = 1/213 (0%)

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           ++L  + +P N +    P VIL+VGVNGVGKTT IGKL+++    G  VMLAAGDTFR+A
Sbjct: 22  EILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA 80

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++QL++W  R +   +    G+D+A++ ++A + A+A+ VDVLI DTAGRL N S LM 
Sbjct: 81  AVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLIADTAGRLQNKSHLME 140

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG
Sbjct: 141 ELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGG 200

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 201 VIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 233


>gi|189426542|ref|YP_001953719.1| signal recognition particle-docking protein FtsY [Geobacter lovleyi
           SZ]
 gi|189422801|gb|ACD97199.1| signal recognition particle-docking protein FtsY [Geobacter lovleyi
           SZ]
          Length = 342

 Score =  222 bits (565), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 128/278 (46%), Positives = 179/278 (64%), Gaps = 12/278 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---EELLTKRYAKDVSVQR-VLYDVSE 90
           ++  + +D    EELE++LI SDIGV    +++   E+ L++   KD +  R  L D  E
Sbjct: 63  VLGKKEIDADTLEELEEILITSDIGVKTTVELIRSLEQRLSRNELKDGAALRGALKD--E 120

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L+ ++L   + P   + +  P  ILVVGVNGVGKTT IGKL+ K +  G KV+LAAGDTF
Sbjct: 121 LLARLLAHHT-PLRLEGTA-PFTILVVGVNGVGKTTTIGKLAAKYAAEGRKVLLAAGDTF 178

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA +QL+IW DR     +  + G+D +A+A++A K A ++  ++LIIDTAGRLH    
Sbjct: 179 RAAAAEQLEIWGDRAGVSVIRHQEGADPSAVAFDACKAAVSRGTEILIIDTAGRLHTKVN 238

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + K+ RV+ R  P APH  L VLD  TGQNAL Q  +F   AG TG+ +TK+DGTA
Sbjct: 239 LMEEMKKIHRVIGREIPGAPHETLLVLDGATGQNALSQARLFKESAGVTGIALTKLDGTA 298

Query: 271 RGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVAKDF 306
           +GG  I + V+H+  +PV F+GVGEGI+DL  F   +F
Sbjct: 299 KGG--IVVAVSHEFGLPVRFIGVGEGIDDLREFEPNEF 334


>gi|71901777|ref|ZP_00683846.1| Cell division transporter substrate-binding protein FtsY [Xylella
           fastidiosa Ann-1]
 gi|71728460|gb|EAO30622.1| Cell division transporter substrate-binding protein FtsY [Xylella
           fastidiosa Ann-1]
          Length = 397

 Score =  222 bits (565), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 117/269 (43%), Positives = 171/269 (63%), Gaps = 2/269 (0%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMP 98
           RLD+ + +E+E  LI +D+GV+    IV+ L  +  A++ + +Q +L  +   +  +L P
Sbjct: 117 RLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQTLLAALRNELITILRP 176

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +SKP        P V LVVGVNGVGKTT IGKL+K     G  +MLAAGDTFR+AA+ QL
Sbjct: 177 VSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQL 236

Query: 159 KIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           + W +R S   +  +   +DAA++ Y+A + A+A+ ++VLI DTAGRLH    LM  + K
Sbjct: 237 QAWGERNSITVIAQKGPNADAASVVYDALQAAKARSIEVLIADTAGRLHTQIGLMNELSK 296

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RVL +LD  APH VL V+D TTGQNAL Q+  FH     TG+++TK+DGTA+GG +  
Sbjct: 297 IRRVLGKLDSTAPHEVLMVIDGTTGQNALSQLRQFHVAVNVTGIVVTKLDGTAKGGVVFT 356

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +     IP++F+ +GE + D+  F  + F
Sbjct: 357 LAREFGIPIHFISIGEQLEDMHFFDPEAF 385


>gi|225012679|ref|ZP_03703114.1| signal recognition particle-docking protein FtsY [Flavobacteria
           bacterium MS024-2A]
 gi|225003212|gb|EEG41187.1| signal recognition particle-docking protein FtsY [Flavobacteria
           bacterium MS024-2A]
          Length = 317

 Score =  221 bits (564), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 132/299 (44%), Positives = 194/299 (64%), Gaps = 8/299 (2%)

Query: 15  RKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +KL  G A+T       + T ++   ++D+ V +ELE +LI+SD+GVA   KI++ L   
Sbjct: 14  KKLEDGLANTKKSFLSRLGTAVVGKTKIDEDVLDELEAILIQSDVGVATTLKIIDAL-EA 72

Query: 74  RYAKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTV 127
           R A+D  +  + ++  + E I ++L+         FN  FS +PHV++VVGVNGVGKTT 
Sbjct: 73  RIARDKYLKTEDLIRMMQEEILELLVEADDDSRDGFNAKFSSKPHVVMVVGVNGVGKTTS 132

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +GKL+ +    G KV+L A DTFR+ AIDQL++WADR S   V  E+GSD A++A++  +
Sbjct: 133 VGKLAHQYKTHGKKVILGAADTFRAGAIDQLQVWADRVSVPLVRQEMGSDPASVAFDTLQ 192

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A++ D++ IDTAGRLHN   LM  + K+ RV+ ++ P APH VL VLD +TGQNA  
Sbjct: 193 SAKAQEADIVFIDTAGRLHNKINLMNELAKVKRVMSKVIPDAPHEVLLVLDGSTGQNAFE 252

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q + F A    + L +TK+DGTA+GG L+ I    +IPV ++GVGEGI D++ F  K+F
Sbjct: 253 QAKQFTAATEVSSLAITKLDGTAKGGVLLGISDQFQIPVKYIGVGEGIEDIQIFDRKEF 311


>gi|238021574|ref|ZP_04602000.1| hypothetical protein GCWU000324_01474 [Kingella oralis ATCC 51147]
 gi|237866188|gb|EEP67230.1| hypothetical protein GCWU000324_01474 [Kingella oralis ATCC 51147]
          Length = 542

 Score =  221 bits (564), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 184/301 (61%), Gaps = 14/301 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W  +L +G   +   + + +  +    ++D+ + EELE +L+ SD+G+   ++++ E+  
Sbjct: 243 WASRLKQGLTKSRNHMAKSLAGVFGGGQIDEDLYEELETVLLTSDMGIEATEQLMREV-- 300

Query: 73  KRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
               +D    + L D +EL       ++ +L PL +P     +  P VI++ G+NG GKT
Sbjct: 301 ----RDRVSLKGLKDGNELRQALKDAVYDLLKPLEQPLAIPENGAPFVIMLAGINGAGKT 356

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R     V S+   D+AA+ ++A
Sbjct: 357 TSIGKLAKYFQAQGKSVILAAGDTFRAAAREQLQEWGERNGV-TVISQAKGDSAAVCFDA 415

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+++D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 416 VEAAKARQIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKSLPDAPHEIIVVLDANIGQNA 475

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV  F    G TGLI+TK+DGTA+GG L  +  +  IPV ++GVGE I+DL PF AKD
Sbjct: 476 VNQVVAFDDALGVTGLIVTKLDGTAKGGVLAALASSRAIPVRYIGVGESIDDLRPFNAKD 535

Query: 306 F 306
           F
Sbjct: 536 F 536


>gi|257439117|ref|ZP_05614872.1| signal recognition particle-docking protein FtsY [Faecalibacterium
           prausnitzii A2-165]
 gi|257198495|gb|EEU96779.1| signal recognition particle-docking protein FtsY [Faecalibacterium
           prausnitzii A2-165]
          Length = 312

 Score =  221 bits (564), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 124/292 (42%), Positives = 181/292 (61%), Gaps = 4/292 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           K+  G   T       I + ++  ++DD + +ELE+ LI +D+G  VA K+V++L  +  
Sbjct: 13  KMKDGLEKTRTGFWGNIMNTLTGSKIDDDLYDELEEQLILADVGGEVAIKLVDKLRDRVN 72

Query: 76  AKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +   ++   ++ +LI   + P ++    D S  P VIL++GVNGVGKTT I KL+  
Sbjct: 73  EKGLKTGEQASDELRDLIADEMRPEAE---MDLSGMPAVILIIGVNGVGKTTSIAKLADF 129

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
            +  G KVMLAAGDTFR+AA +QL+IWADR     V +  G+D AA+ ++  K A A+  
Sbjct: 130 YTRQGKKVMLAAGDTFRAAASEQLEIWADRAGVPLVKAGEGADPAAVIFDTVKSATARGY 189

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I DTAGRLHN + LMA + K+ R +K+  P A    L VLDA TGQNA+ Q   F  
Sbjct: 190 DLVIADTAGRLHNKANLMAELSKISRSVKKASPEASLETLLVLDAITGQNAISQAREFCK 249

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            A  TG+I+TK+DGTA+GG ++ +     +PV F+GVGEGI+DL PF  + +
Sbjct: 250 AANATGIILTKLDGTAKGGCVVAVKQRLGLPVRFIGVGEGIDDLIPFTPEGY 301


>gi|34499658|ref|NP_903873.1| cell division protein FtsY [Chromobacterium violaceum ATCC 12472]
 gi|34105508|gb|AAQ61863.1| cell division protein FtsY [Chromobacterium violaceum ATCC 12472]
          Length = 375

 Score =  221 bits (564), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 123/313 (39%), Positives = 191/313 (61%), Gaps = 15/313 (4%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           + ++ V  + +SW  +L  G A T  KL + +  +    ++D+ + EELE +L+ +D+G+
Sbjct: 65  IPDEPVPLKKMSWTERLKAGLAKTRDKLGKQLAGLFGGGKIDEDLYEELETVLLTADMGM 124

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHV 113
              + +++++  +     VS+ + L D SEL       +  ++ PL  P N +   +P V
Sbjct: 125 DATEHLLQDVRER-----VSL-KGLKDSSELKGALKDSLQDLIGPLEVPLNVE-GKKPFV 177

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I++ GVNG GKTT IGKL+K     G  V+LAAGDTFR+AA +QL  W +R +   +  +
Sbjct: 178 IMMTGVNGAGKTTSIGKLAKYYQSQGKSVLLAAGDTFRAAAREQLIAWGERNNVTVIAQQ 237

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G D+AA+ Y+A + A A+ +D+++ DTAGRL     LM  I K+ RV+++  P APH V
Sbjct: 238 -GGDSAAVCYDAIQAAIARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPDAPHEV 296

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + VLDA  GQN + QV+ F    G TGLI+TK+DGTA+GG +  I     IP+ F+GVGE
Sbjct: 297 VLVLDANIGQNTVNQVKAFDDALGLTGLILTKLDGTAKGGVIAAIAKQRPIPLRFVGVGE 356

Query: 294 GINDLEPFVAKDF 306
            I+DL PF ++D+
Sbjct: 357 SIDDLRPFDSRDY 369


>gi|3334298|sp|O30391|FTSY_NEIMC RecName: Full=Cell division protein ftsY homolog
 gi|2580590|gb|AAB97510.1| putative transcriptional regulator [Neisseria meningitidis]
          Length = 421

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 183/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+ +   + +++++
Sbjct: 120 LGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMDMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|293397906|ref|ZP_06642112.1| signal recognition particle receptor [Neisseria gonorrhoeae F62]
 gi|291611852|gb|EFF40921.1| signal recognition particle receptor [Neisseria gonorrhoeae F62]
          Length = 421

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 183/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 120 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|242280173|ref|YP_002992302.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           salexigens DSM 2638]
 gi|242123067|gb|ACS80763.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           salexigens DSM 2638]
          Length = 675

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 122/298 (40%), Positives = 185/298 (62%), Gaps = 7/298 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73
           KL++G   T  ++ + I  ++SS    DD   EE E++LI +D+G   + ++VE +  + 
Sbjct: 379 KLSEGLNKTREQITKRIDSMLSSHTAFDDDFWEEFEEILIMADVGYDASMELVERMKERI 438

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           R A + + +    +  +L+ + L  + K P      + P V++++GVNGVGKTT I KL+
Sbjct: 439 RKAGETNPE----NFKDLLREELDEIFKVPKRIKAFNPPEVVMMIGVNGVGKTTTIAKLA 494

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +    G KV++ AGDTFR+AAI QL++WA R  A F     GSD AA+AYEA   A   
Sbjct: 495 HRAQMQGRKVLIVAGDTFRAAAIGQLEVWARRVGAGFYAKAEGSDPAAVAYEAIDYAVKN 554

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D++++DTAGRLHN + LM  + K+ RVL +    APH  + V+DATTGQNAL Q ++F
Sbjct: 555 GYDLMLLDTAGRLHNKANLMEELHKIRRVLGKKHDEAPHRSVLVIDATTGQNALSQTKIF 614

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +   G   LI+TK+DGTA+GG +I + + HKIP+  +G+GE + DL PF  +DF+  +
Sbjct: 615 NEEIGVDELILTKLDGTAKGGVMIAVTMQHKIPITHIGLGEKMEDLRPFNGEDFAKAL 672


>gi|154250433|ref|YP_001411258.1| signal recognition particle-docking protein FtsY [Fervidobacterium
           nodosum Rt17-B1]
 gi|154154369|gb|ABS61601.1| signal recognition particle-docking protein FtsY [Fervidobacterium
           nodosum Rt17-B1]
          Length = 304

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/292 (43%), Positives = 186/292 (63%), Gaps = 10/292 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  KL  G   +       I  I+  ++ D   REE+E+LLI +D+GV   + I+E+L
Sbjct: 1   MGFFDKLRDGLKKSRESFFNKIGQILKFKKFDKETREEIEELLILADVGVEATEYIIEKL 60

Query: 71  LTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              +     S ++ +L D+ +  +++ +P  KPF         VI +VGVNG GKTT  G
Sbjct: 61  EEMKPEDAFSALKEILVDILKGKNELNVPSEKPF---------VISLVGVNGSGKTTTCG 111

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+      G +V++ A DTFR+AAIDQL++WADR+ A F+    G+DAAA+AY+A   A
Sbjct: 112 KLASMFRGEGKQVVIGACDTFRAAAIDQLRVWADRSGATFIAHMEGADAAAVAYDAVNHA 171

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            +K  DV+++DTAGRLHN   LM  + K+ RV+++L P+APH VL VLDA TGQN L+Q 
Sbjct: 172 ISKGKDVVLLDTAGRLHNKKHLMDELQKVNRVIQKLMPNAPHEVLLVLDAVTGQNGLQQA 231

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           ++F  V   TG+++TK+DGTA+GG  I I     IP+ F+GVGEGI+DL+PF
Sbjct: 232 KIFKEVVNVTGIVLTKLDGTAKGGIAIAIAKELGIPIKFIGVGEGIDDLKPF 283


>gi|229825031|ref|ZP_04451100.1| hypothetical protein GCWU000182_00381 [Abiotrophia defectiva ATCC
           49176]
 gi|229790778|gb|EEP26892.1| hypothetical protein GCWU000182_00381 [Abiotrophia defectiva ATCC
           49176]
          Length = 304

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 116/298 (38%), Positives = 182/298 (61%), Gaps = 4/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL +G + T   +   +++I +   + DD   EELE+ LI +D+G++    ++E 
Sbjct: 1   MGFFSKLAEGLSKTRNNIMNSVSNIFTGHDIIDDDFYEELEETLIMADLGISTTTSVIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K++ ++        L+  +   +  KP  +DF ++  V+L++GVNGVGKTT +
Sbjct: 61  LKAK--VKELKIKDPADCKKHLMDSLKEQMQVKPDAYDFENKKSVVLMIGVNGVGKTTSV 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ ++ ++G KV++AA DTFR+ AI+QL  WA R+  + +  + GSD AA+ ++A   
Sbjct: 119 GKLASQLKNSGKKVLVAAADTFRAGAIEQLTEWARRSDVELIAQKEGSDPAAVVFDAVNA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ VDVLI DTAGRLHN   LM  + K+ R++ +  P A    L V+D TTGQNA  Q
Sbjct: 179 AKARNVDVLICDTAGRLHNKKNLMDELNKIYRIIGKEFPEAAIETLVVVDGTTGQNAKEQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              F   A   G+++TK+DGTA+GG  I I     IPV ++G+GE I+DL+ F A+ F
Sbjct: 239 ARQFSEAAPVNGIVLTKLDGTAKGGIAIAIESELSIPVKYIGIGEQIDDLQKFDAEQF 296


>gi|282858817|ref|ZP_06267962.1| signal recognition particle-docking protein FtsY [Prevotella bivia
           JCVIHMP010]
 gi|282588386|gb|EFB93546.1| signal recognition particle-docking protein FtsY [Prevotella bivia
           JCVIHMP010]
          Length = 317

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 119/272 (43%), Positives = 176/272 (64%), Gaps = 7/272 (2%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMP 98
           +DD V + LE++L+ SD+GV    KI+  +  +R A+D  VS   +   +   I ++L  
Sbjct: 40  VDDDVLDNLEEILVTSDVGVDTTIKIIRRI-EERVARDKYVSTSELNGILKSEIAELLTE 98

Query: 99  LSKPF--NWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            +     NW+     +P+VILVVGVNGVGKTT IGKL+ +   AG KV L A DTFR+AA
Sbjct: 99  NNTESLGNWELPTDKKPYVILVVGVNGVGKTTTIGKLAYQFKQAGKKVYLGAADTFRAAA 158

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           ++Q+ IW +R     V  ++G+D A++A++  + A+A + DV++IDTAGRLHN   LM  
Sbjct: 159 VEQISIWGERVGVPVVKQQMGADPASVAFDTLQSARANEADVVLIDTAGRLHNKVNLMNE 218

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+  V+K++ P APH V+ VLD +TGQNA  Q + F AV   T L +TK+DGTA+GG 
Sbjct: 219 LKKIKEVMKKVMPDAPHEVMLVLDGSTGQNAFEQAKQFAAVTQITSLAITKLDGTAKGGV 278

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +I I    K+PV ++G+GEG+ DL+ F  ++F
Sbjct: 279 VIGISDQLKVPVKYIGLGEGMEDLQLFNKEEF 310


>gi|291515239|emb|CBK64449.1| signal recognition particle-docking protein FtsY [Alistipes shahii
           WAL 8301]
          Length = 332

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 185/311 (59%), Gaps = 11/311 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIV----EEL 70
           +L+ G   T   L   +   ++ R  +D GV ++LE++LI SD+GV    KI+    E +
Sbjct: 26  ELSAGLEKTKTGLFSKLARAVAGRSTIDAGVLDDLEEVLISSDVGVETTVKIIRRIEERV 85

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIG 129
              +Y     +Q +L      + +     S+ F  D +  +P+V++VVGVNG GKTT IG
Sbjct: 86  ARDKYMNASELQSILRGEIATLMEDAHGSSENFGLDATEGQPYVVMVVGVNGAGKTTTIG 145

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ ++  AG KV + A DTFR+AAIDQL++WADR  A  +  ++GSD A++A++    A
Sbjct: 146 KLAAQLGKAGRKVWIGAADTFRAAAIDQLQVWADRAGATMIRQQMGSDPASVAFDTLTSA 205

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV++IDTAGRLHN   LM  + K+  V+ ++ P APH V+ VLD +TGQNA  Q 
Sbjct: 206 KANGADVVLIDTAGRLHNKVGLMNELTKIRNVMGKVIPGAPHEVMLVLDGSTGQNAFEQA 265

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      T L +TK+DGTA+GG +I I     IPV ++G+GEGI+ L  F  K+F   
Sbjct: 266 KQFTQATQVTSLTITKLDGTAKGGVVIGISDQFHIPVRYIGIGEGIDQLRIFDRKEFVNA 325

Query: 310 ITGCLDYGEEK 320
           +     +G EK
Sbjct: 326 L-----FGHEK 331


>gi|298209272|ref|YP_003717451.1| recognition particle-docking protein FtsY [Croceibacter atlanticus
           HTCC2559]
 gi|83849199|gb|EAP87068.1| recognition particle-docking protein FtsY [Croceibacter atlanticus
           HTCC2559]
          Length = 317

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 120/273 (43%), Positives = 173/273 (63%), Gaps = 7/273 (2%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM 97
           ++DD V +ELE++L+ SD+GV    KI++ +  +R AKD  +    +   + E I  +L 
Sbjct: 40  KVDDDVLDELEEILVASDVGVTTTIKIIKRI-EERVAKDKYLGTDELNLILREEIAGLLS 98

Query: 98  PLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                    F      +P+VI+VVGVNGVGKTT IGKL+ +    G  V+L A DTFR+A
Sbjct: 99  ETETDSKLGFHIPEGKKPYVIMVVGVNGVGKTTTIGKLAHQFKSQGKNVVLGAADTFRAA 158

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           AIDQL++WADRT    V  ++GSD A++A+E  ++A  +  DV+++DTAGRLHN   LM 
Sbjct: 159 AIDQLQVWADRTGVPIVKQQMGSDPASVAFETVQEAVKQNADVVLVDTAGRLHNKVNLMN 218

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ RV++++  + P  VL VLD +TGQNA  Q + F A    T L +TK+DGTA+GG
Sbjct: 219 ELSKVKRVMQKVADNVPDEVLLVLDGSTGQNAFEQAKQFTAATEVTSLAITKLDGTAKGG 278

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            +I I    +IPV ++GVGEGI DL+ F   +F
Sbjct: 279 VVIGISDQFQIPVKYIGVGEGIEDLQAFDKFEF 311


>gi|288818714|ref|YP_003433062.1| signal recognition particle [Hydrogenobacter thermophilus TK-6]
 gi|288788114|dbj|BAI69861.1| signal recognition particle [Hydrogenobacter thermophilus TK-6]
 gi|308752301|gb|ADO45784.1| signal recognition particle-docking protein FtsY [Hydrogenobacter
           thermophilus TK-6]
          Length = 461

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 122/295 (41%), Positives = 182/295 (61%), Gaps = 4/295 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+I K+ KG   T  K   GI  I+  R++D+ + EELE+ L+R+DIG   A  +VEEL 
Sbjct: 162 SFIEKIRKGLQKTKEKALFGI--ILRGRKVDEALFEELEETLVRADIGAKTAINVVEELK 219

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +   +++     L D+ +     L+   +        + ++ L +GVNG GKTT IGKL
Sbjct: 220 KEAIKRNIKESEGLRDLLKEKLSSLLTGCQDNIKVKEGKTNIYLFLGVNGSGKTTTIGKL 279

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G +V+L A DTFRSAA++QL++WA R+ AD V  E G+D A++ ++A K+A  
Sbjct: 280 AYKFVSEGKRVLLCAADTFRSAAVEQLEVWAKRSGADIVKREEGADPASVVFDAMKRAS- 338

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            +  +++IDTAGRLH    L+  + K+  V++R  P  P     VLDAT GQN++ Q ++
Sbjct: 339 -EYHLVLIDTAGRLHTKEPLIRELRKIKSVIQRFYPEEPTETFLVLDATLGQNSISQAKV 397

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F      TG+I+TK+DGTA+GG +IPI    K+PV  LGVGEG++DL+PF A+ F
Sbjct: 398 FKEAVDITGIILTKLDGTAKGGAIIPICRELKVPVKLLGVGEGLDDLQPFDAEVF 452


>gi|313888464|ref|ZP_07822131.1| signal recognition particle-docking protein FtsY [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845493|gb|EFR32887.1| signal recognition particle-docking protein FtsY [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 491

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 122/307 (39%), Positives = 183/307 (59%), Gaps = 12/307 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S  ++L +G   T  ++   I  ++ +  ++DD + E+LED+LI +DIG+    K+++ L
Sbjct: 191 SLFQRLKEGLDKTRKEVGIKINTVLGAYVKIDDEMLEDLEDILISADIGMETTMKLIDNL 250

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-----SHRPHVILVVGVNGVGKT 125
                 ++  ++  + D  E+   ++    K  N +      +  P +ILVVGVNGVGKT
Sbjct: 251 ------RETIIREKINDPQEVKPLLMAEAKKLMNPELNTPIKTEPPVIILVVGVNGVGKT 304

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKLS +    G  V++ A DTFR+AAIDQLK W +R   D +    GSD AA+ ++A
Sbjct: 305 TTIGKLSSRFKREGKSVLVCAADTFRAAAIDQLKEWGNRAHVDIISHAEGSDPAAVVFDA 364

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+K DVLI+DTAGRLHN S LM  + K+ R++    P A    L VLD+TTGQNA
Sbjct: 365 IEAAKARKTDVLIVDTAGRLHNKSNLMKELEKINRIISNKFPEANRENLLVLDSTTGQNA 424

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F      TG+ +TK+DGTA+GG ++ +     IP+  +GVGEGI+DL+ F   +
Sbjct: 425 INQAKTFREATDITGIALTKLDGTAKGGVVVALQSELGIPIKLIGVGEGIDDLQDFNIDN 484

Query: 306 FSAVITG 312
           F   I G
Sbjct: 485 FLETIFG 491


>gi|154492268|ref|ZP_02031894.1| hypothetical protein PARMER_01902 [Parabacteroides merdae ATCC
           43184]
 gi|154087493|gb|EDN86538.1| hypothetical protein PARMER_01902 [Parabacteroides merdae ATCC
           43184]
          Length = 317

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   IT  I+ + ++DD V + LE++LI SD+GV    KI+  +   R 
Sbjct: 15  LDKGLSKTKENVFSKITRAIAGKSKVDDEVLDNLEEVLITSDVGVDTTLKIISRI-EDRV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A+D  V+   +   + E I  +L        + F      +P+VI+VVGVNGVGKTT IG
Sbjct: 74  ARDKYVTTSELTAILREEIASLLTENHTEDLESFTVPEDKKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW++R     V  ++GSD A++A++    A
Sbjct: 134 KLAYQFKKAGKNVYLGAADTFRAAAVEQLVIWSERVGVPIVKQKMGSDPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +TGQNA  Q 
Sbjct: 194 KANGADVVIIDTAGRLHNKINLMNELTKIKNVMKKVVPDAPHEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F A      L +TK+DGTA+GG +I I    +IPV ++G+GEG+ DL+ F  K+F
Sbjct: 254 KQFTAATEVNALAVTKLDGTAKGGVVIGISDHFRIPVKYIGLGEGMEDLQVFNRKEF 310


>gi|94970363|ref|YP_592411.1| signal recognition particle-docking protein FtsY [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552413|gb|ABF42337.1| signal recognition particle-docking protein FtsY [Candidatus
           Koribacter versatilis Ellin345]
          Length = 320

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 178/296 (60%), Gaps = 3/296 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            +++ +    T   L E I D +  R  +DD    ELE  LI +D+G     ++++ L  
Sbjct: 19  FQRMKEAVTRTRESLTERIEDAVGVRPEIDDYTLNELELTLIAADLGSVTTAEVLQALKD 78

Query: 73  KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           K   K V     +  V  +E++  +    +K         P VILVVGVNG GKTT IGK
Sbjct: 79  KVDRKQVQSTDEIKGVLKAEILRLLNEAAAKSPVRTVDQPPEVILVVGVNGTGKTTTIGK 138

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS  +   G +V+L A DTFR+AAIDQL++W +RT  + + ++ G D +A+ ++A + A+
Sbjct: 139 LSNLLRAQGKQVLLCAADTFRAAAIDQLEVWGERTGVEVIKTKPGGDPSAVLFDALQAAK 198

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VD +I+DTAGRLH    LM  + KM R  ++  P APH VL V+DATTGQN L+Q +
Sbjct: 199 ARAVDYVIVDTAGRLHTKQNLMLELEKMKRTAQKFIPSAPHEVLLVMDATTGQNGLQQAK 258

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F   AG TG+++TK+DGTA+GG ++ I     +PV ++GVGE I D+ PF A DF
Sbjct: 259 LFTESAGVTGIVLTKLDGTAKGGVVVAISRELGLPVRYVGVGEKIGDILPFNANDF 314


>gi|319779122|ref|YP_004130035.1| cell division protein [Taylorella equigenitalis MCE9]
 gi|317109146|gb|ADU91892.1| cell division protein [Taylorella equigenitalis MCE9]
          Length = 521

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/312 (40%), Positives = 192/312 (61%), Gaps = 17/312 (5%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE   W  +L KG + ++L        I    R+D+ + EELE+ L+ +D GV   QKI+
Sbjct: 220 SEKKGWFSRLKKGLSRSNL------GSIFVGTRIDEELFEELENSLLMADAGVIATQKII 273

Query: 68  EEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            EL   + K++ +D    +V + ++++I + L PL K F+     R +V+++ GVNG GK
Sbjct: 274 SELRQAVKKQHLEDAD--QVKHALTQIIAQHLKPLEKIFDI-HEDRTNVVMIAGVNGAGK 330

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+      G  ++LAAGDTFR+AA +QL+ W  + +   V S+ G D A++A++
Sbjct: 331 TTSIGKLAYHFQAHGASLLLAAGDTFRAAAREQLQQWGLKNNVQ-VISQQGGDPASVAFD 389

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A     AKK  V++IDTAGRL   + LM  + K+ RV+ + +  APH VL V+D  TGQN
Sbjct: 390 AVNSGIAKKTTVVMIDTAGRLPTQTHLMEELKKIKRVITKAESSAPHEVLLVVDGNTGQN 449

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV----THKIPVYFLGVGEGINDLEP 300
           AL Q++ F    G TGL++TK+DGTA+GG L+ +         +PVY++GVGE + DL+P
Sbjct: 450 ALAQIKAFDEAIGLTGLLVTKLDGTAKGGVLVAMASGVQGVRTVPVYWIGVGESLEDLQP 509

Query: 301 FVAKDFSAVITG 312
           FVA++F+  + G
Sbjct: 510 FVAEEFAQALVG 521


>gi|313159547|gb|EFR58910.1| signal recognition particle-docking protein FtsY [Alistipes sp.
           HGB5]
          Length = 336

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/317 (39%), Positives = 182/317 (57%), Gaps = 6/317 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60
           S  + + E      +L  G   T   L   +   ++ R  +D  V ++LE++LI SD+GV
Sbjct: 14  SAAQASEERKQQQEELNAGLEKTKTGLFSKLARAVAGRSTVDADVLDDLEEVLISSDVGV 73

Query: 61  AVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVIL 115
               KI+    E +   +Y     +Q +L +    + +      K F  D     P+V++
Sbjct: 74  ETTVKIIRGIEERVARDKYMGTSELQSILREEVTALMEESHGSEKHFGLDAKEGEPYVVM 133

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNG GKTT IGKL+ +++ AG KV + A DTFR+AAIDQLK+WADR  A  +  E+G
Sbjct: 134 VVGVNGAGKTTTIGKLAAQLTKAGQKVWIGAADTFRAAAIDQLKVWADRAGATMIRQEMG 193

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++A++    A+A   DV++IDTAGRLHN   LM  + K+  V+ ++ P APH V+ 
Sbjct: 194 SDPASVAFDTLTSAKANGADVVLIDTAGRLHNKINLMNELTKIRNVMGKVIPGAPHEVML 253

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNA  Q   F      T L +TK+DGTA+GG +I I     IPV ++G+GEGI
Sbjct: 254 VLDGSTGQNAFEQARQFTQATQVTSLTITKLDGTAKGGVVIGISDQFHIPVRYIGIGEGI 313

Query: 296 NDLEPFVAKDFSAVITG 312
           + L  F  K+F   + G
Sbjct: 314 DQLRIFDRKEFVKALFG 330


>gi|291524526|emb|CBK90113.1| signal recognition particle-docking protein FtsY [Eubacterium
           rectale DSM 17629]
          Length = 313

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/296 (40%), Positives = 179/296 (60%), Gaps = 4/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           + ++L  G   T   +  GI  + S    +DD   EELE++LI  D+GV   + I+E+L 
Sbjct: 10  FFKRLVSGLTKTRDNIVSGIDSLFSGFSHIDDDFYEELEEILIMGDLGVRATENIIEDL- 68

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +R  K+  ++        LI  +   +  +   + F +   V+LV+GVNGVGKTT +GK
Sbjct: 69  -QRKVKEQHIKEPAECKELLIESIKEQMKVEETAYRFENEKSVVLVIGVNGVGKTTTVGK 127

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+ + G KV++A  DTFR+AA DQLK WA+R   D +    G+D  A+ Y+A   ++
Sbjct: 128 LAGKLKEQGKKVVIAGADTFRAAAGDQLKEWANRAGVDMIGGAEGADPGAVVYDAVAASK 187

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DVL++DTAGRLHN   LM  +GK+ ++L+   P A    L VLDATTGQNAL Q  
Sbjct: 188 ARNADVLLVDTAGRLHNKKNLMNELGKINKILESEYPDAYRETLVVLDATTGQNALVQAR 247

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F  VA  +G+++TKMDGTA+GG  + I     +PV ++GVGE I+DL+ F + +F
Sbjct: 248 EFSDVAKISGIVLTKMDGTAKGGIAVAIQSELSVPVKYIGVGETIDDLQKFDSDEF 303


>gi|294500963|ref|YP_003564663.1| signal recognition particle-docking protein FtsY [Bacillus
           megaterium QM B1551]
 gi|295706309|ref|YP_003599384.1| signal recognition particle-docking protein FtsY [Bacillus
           megaterium DSM 319]
 gi|294350900|gb|ADE71229.1| signal recognition particle-docking protein FtsY [Bacillus
           megaterium QM B1551]
 gi|294803968|gb|ADF41034.1| signal recognition particle-docking protein FtsY [Bacillus
           megaterium DSM 319]
          Length = 332

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/312 (42%), Positives = 197/312 (63%), Gaps = 14/312 (4%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+  ++ S  +K   G + T     E + D++S  R++D+   EELE++LI +D+GVA 
Sbjct: 9   EKITMQTDSVTQKFKDGLSKTRNSFSERVNDLVSRYRQVDEEFFEELEEILISADVGVAT 68

Query: 63  AQKIVEEL---LTKRYAKDVS-VQRV----LYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
              ++++L   + +R  KD   VQ V    L D+ E   + +  L+   N D +    VI
Sbjct: 69  VLDLIDDLKSEVKRRNIKDPQDVQAVISEKLIDIYESGEEQIGELNMQQN-DLT----VI 123

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L VGVNGVGKTT IGK++ K    G KV++AAGDTFR+ AI+QL++W +R   D +    
Sbjct: 124 LFVGVNGVGKTTTIGKIAHKFKQEGKKVVMAAGDTFRAGAIEQLEVWGERVGVDVIKQSA 183

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD AA+ Y+A + A+A+K DVL+ DTAGRL N   LM  + K+ RV++R  P APH VL
Sbjct: 184 GSDPAAVMYDAVQSAKARKADVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVL 243

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNAL Q + F      TG+++TK+DGTA+GG ++ I    K+PV F+G+GE 
Sbjct: 244 LVLDATTGQNALSQAKTFSEATNVTGIVLTKLDGTAKGGIVLAIRNELKLPVKFVGLGEK 303

Query: 295 INDLEPFVAKDF 306
           ++DL+PF  + +
Sbjct: 304 VDDLQPFDTEQY 315


>gi|238923874|ref|YP_002937390.1| cell division protein FtsY [Eubacterium rectale ATCC 33656]
 gi|238875549|gb|ACR75256.1| cell division protein FtsY [Eubacterium rectale ATCC 33656]
          Length = 313

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/296 (40%), Positives = 179/296 (60%), Gaps = 4/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           + ++L  G   T   +  GI  + S    +DD   EELE++LI  D+GV   + I+E+L 
Sbjct: 10  FFKRLVSGLTKTRDNIVSGIDSLFSGFSHIDDDFYEELEEILIMGDLGVRATESIIEDL- 68

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +R  K+  ++        LI  +   +  +   + F +   V+LV+GVNGVGKTT +GK
Sbjct: 69  -QRKVKEQHIKEPAECKELLIESIKEQMKVEETAYRFENEKSVVLVIGVNGVGKTTTVGK 127

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+ + G KV++A  DTFR+AA DQLK WA+R   D +    G+D  A+ Y+A   ++
Sbjct: 128 LAGKLKEQGKKVVIAGADTFRAAAGDQLKEWANRAGVDMIGGAEGADPGAVVYDAVAASK 187

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DVL++DTAGRLHN   LM  +GK+ ++L+   P A    L VLDATTGQNAL Q  
Sbjct: 188 ARNADVLLVDTAGRLHNKKNLMNELGKINKILESEYPDAYRETLVVLDATTGQNALVQAR 247

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F  VA  +G+++TKMDGTA+GG  + I     +PV ++GVGE I+DL+ F + +F
Sbjct: 248 EFSDVAKISGIVLTKMDGTAKGGIAVAIQSELSVPVKYIGVGETIDDLQKFDSDEF 303


>gi|332184708|gb|AEE26962.1| Signal recognition particle receptor protein FtsY (alpha subunit)
           [Francisella cf. novicida 3523]
          Length = 331

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 187/308 (60%), Gaps = 14/308 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L  G + T+ K   G++ I+  +++ D+ + E++E  L+ +D+GV    +IV       
Sbjct: 30  RLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEATDEIV------T 83

Query: 75  YAKDVSVQRVLYDVSELIHKMLM-------PLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           Y +D   +  L    +L   +         P  KP   D    P VILVVGVNGVGKTT 
Sbjct: 84  YLRDQVARNELQTADKLNQIIKEKLIEIILPCEKPLEIDTQKSPFVILVVGVNGVGKTTT 143

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ Y+A  
Sbjct: 144 IGKLTKKLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQHEGADSASVIYDAIS 203

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A++K + V+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG NAL 
Sbjct: 204 SAKSKGIGVVIADTAGRLHNKDNLMQELKKVVKVIKKTDGTAPHEIMLVVDATTGGNALS 263

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F A+DF+
Sbjct: 264 QAEAFNQIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQIFNARDFT 323

Query: 308 AVITGCLD 315
             +    D
Sbjct: 324 TALFNSND 331


>gi|240126587|ref|ZP_04739473.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268685164|ref|ZP_06152026.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268625448|gb|EEZ57848.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-92-679]
          Length = 417

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTAGDSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 295 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 354

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 355 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 411


>gi|332884206|gb|EGK04474.1| signal recognition particle-docking protein FtsY [Dysgonomonas
           mossii DSM 22836]
          Length = 317

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 116/259 (44%), Positives = 165/259 (63%), Gaps = 7/259 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQR------VLYDVSELIHKMLMPLSKPFNWDF 107
           I SD+GV    KI+E +  KR AKD  +        +  +++ L+ +     ++ F+   
Sbjct: 53  ITSDVGVNTTLKIIERI-EKRVAKDKYINTDELNSILREEIAHLLTENNTTDTEGFSTPE 111

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +H+P+VI+VVGVNGVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R   
Sbjct: 112 NHKPYVIMVVGVNGVGKTTTIGKLANQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGV 171

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +   +GSD A++A++    A+A   DV+IIDTAGRLHN   LM  + K+ +V++++ P
Sbjct: 172 PVIKQAMGSDPASVAFDTLSSAKANNADVVIIDTAGRLHNKVGLMNELTKIKKVMEKIVP 231

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            APH VL VLD +TGQNA  Q   F A    T L +TK+DGTA+GG +I I    KIPV 
Sbjct: 232 EAPHEVLLVLDGSTGQNAFEQATQFTAATDVTALAITKLDGTAKGGVVIGISDQFKIPVK 291

Query: 288 FLGVGEGINDLEPFVAKDF 306
           ++G+GEGI+DL+ F  K+F
Sbjct: 292 YIGLGEGIDDLQVFTRKEF 310


>gi|269468214|gb|EEZ79907.1| cell division protein FtsY [uncultured SUP05 cluster bacterium]
          Length = 281

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 114/254 (44%), Positives = 165/254 (64%), Gaps = 3/254 (1%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPH 112
           I +DIG+    K++E +      K +     LY  + + + K+L+      N +  +   
Sbjct: 24  ITADIGINTTDKVLESVRKNASRKILKNSDSLYQFLKDELRKLLID-DNQLNINV-NSTF 81

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VILVVGVNG GKTT IGKL+K   + G  VMLAAGDTFR+AA++QLK+W +R     V  
Sbjct: 82  VILVVGVNGAGKTTTIGKLAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGERNEIPVVAQ 141

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           + G+DAA++ Y+A++ A+AK +D+LI DTAGRLH    LM  + K+ RVLK+ + +APH 
Sbjct: 142 DTGADAASVIYDAYESAKAKNIDILIADTAGRLHTQGNLMQELEKIKRVLKKHNENAPHE 201

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            + V+D  +GQNA+ Q + F+   G +G+ +TK+DGTA+GG +  I    K+PV ++GVG
Sbjct: 202 TMLVIDGGSGQNAINQAKEFNKTIGLSGICITKLDGTAKGGVVFAISDELKLPVRYIGVG 261

Query: 293 EGINDLEPFVAKDF 306
           EGINDL+PF AK F
Sbjct: 262 EGINDLKPFNAKKF 275


>gi|120436587|ref|YP_862273.1| cell division protein FtsY [Gramella forsetii KT0803]
 gi|117578737|emb|CAL67206.1| cell division protein FtsY [Gramella forsetii KT0803]
          Length = 317

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 121/296 (40%), Positives = 181/296 (61%), Gaps = 6/296 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIV----EELL 71
           L KG   +     + ++  ++ + ++D+ V ++LE++L+ SD+GV    KI+    E + 
Sbjct: 16  LDKGLEKSKTSFFDKMSKAVAGKDKVDEEVLDDLENVLVSSDVGVTTTIKIINRIEERVA 75

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +Y     + ++L + ++ L+ +               +P+VI+VVGVNGVGKTT IGK
Sbjct: 76  RDKYLGTDELNKILREEIAALLSETNTGEGSEIQIPSDKKPYVIMVVGVNGVGKTTTIGK 135

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    G KV+L A DTFR+AAIDQL+IWADRT    +  ++GSD A++A++  + A 
Sbjct: 136 LAHQFKSNGQKVVLGAADTFRAAAIDQLQIWADRTGVPIIKQKMGSDPASVAFDTVQSAV 195

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV++IDTAGRLHN   LM  + K+ RV+++    APH VL VLD +TGQNA  Q +
Sbjct: 196 KMNADVVLIDTAGRLHNKVNLMNELTKVKRVMQKTIADAPHEVLLVLDGSTGQNAFEQAK 255

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F A    T L +TK+DGTA+GG +I I    KIPV ++GVGEGI DL+ F   +F
Sbjct: 256 QFTAATEVTSLAVTKLDGTAKGGVVIGISDQFKIPVKYIGVGEGIEDLQVFNKYEF 311


>gi|164688565|ref|ZP_02212593.1| hypothetical protein CLOBAR_02210 [Clostridium bartlettii DSM
           16795]
 gi|164602978|gb|EDQ96443.1| hypothetical protein CLOBAR_02210 [Clostridium bartlettii DSM
           16795]
          Length = 452

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 117/254 (46%), Positives = 163/254 (64%), Gaps = 3/254 (1%)

Query: 54  IRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           I +D+GV     I+E+L    R  K    Q V  ++  +I  +L         D SH P 
Sbjct: 195 ITADVGVNTTMDIIEKLEDVIRTKKITDPQDVREELKLIIEDILS--KDDTKLDVSHSPT 252

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +IL+VGVNGVGKTT IGKL+ +    G KV+LAAGDTFR+AAIDQL++WA+R + D +  
Sbjct: 253 IILMVGVNGVGKTTTIGKLAHRYKSEGKKVLLAAGDTFRAAAIDQLEVWANRCNVDIIKH 312

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           + G+D  A+ ++A K ++A+ VDVLI DTAGRLHN S LM  +GK+ +++ R  P A   
Sbjct: 313 QEGADPGAVIFDAIKASKARGVDVLICDTAGRLHNKSNLMNELGKVFKIVDREYPEAKKE 372

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL V+DATTGQNA+ Q + F  V   TGL +TK+DGTA+GG ++ +     +PV  +GVG
Sbjct: 373 VLLVVDATTGQNAVSQAKSFKEVCDITGLALTKLDGTAKGGVILAVKSEVDVPVKLIGVG 432

Query: 293 EGINDLEPFVAKDF 306
           E + DL+ F +K F
Sbjct: 433 EKMEDLQDFDSKSF 446


>gi|313114996|ref|ZP_07800489.1| signal recognition particle-docking protein FtsY [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310622687|gb|EFQ06149.1| signal recognition particle-docking protein FtsY [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 316

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 123/288 (42%), Positives = 180/288 (62%), Gaps = 4/288 (1%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           G   T       I + ++   +DD + ++LE+ LI +D+G  VA ++V++L  + + K +
Sbjct: 21  GLEKTRTGFWGNILNTLTGSVIDDDMYDDLEEQLILADVGGEVAVRLVDKLRDRVHEKGL 80

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
                  D + ++I + + P ++    D S +P VILV+GVNGVGKTT I KL+   +  
Sbjct: 81  KTGEEAADALRDIIAEEMTPDAE---MDLSGKPAVILVIGVNGVGKTTSIAKLADHYTRE 137

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G KVMLAAGDTFR+AA +QL+IWADR     V +  G+D AA+ ++  K A A+  D++I
Sbjct: 138 GKKVMLAAGDTFRAAASEQLEIWADRAGVPIVSAGEGADPAAVIFDTVKSATARGYDMVI 197

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
            DTAGRLHN + LMA + K+ R +K+  P A    L VLDA TGQNA+ Q + F   A  
Sbjct: 198 ADTAGRLHNKANLMAELSKISRSVKKASPEASLETLLVLDAITGQNAISQAKEFCKAADA 257

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TG+I+TK+DGTA+GG ++ +     +PV F+GVGEGI+DL PF  + F
Sbjct: 258 TGIILTKLDGTAKGGCVVAVKQRLGLPVRFIGVGEGIDDLLPFTPEGF 305


>gi|288802188|ref|ZP_06407628.1| signal recognition particle-docking protein FtsY [Prevotella
           melaninogenica D18]
 gi|302346578|ref|YP_003814876.1| signal recognition particle-docking protein FtsY [Prevotella
           melaninogenica ATCC 25845]
 gi|288335155|gb|EFC73590.1| signal recognition particle-docking protein FtsY [Prevotella
           melaninogenica D18]
 gi|302150799|gb|ADK97060.1| signal recognition particle-docking protein FtsY [Prevotella
           melaninogenica ATCC 25845]
          Length = 316

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 125/292 (42%), Positives = 183/292 (62%), Gaps = 8/292 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T   +   +T  ++ + ++DD V ++LE++L+ SD+GV    KI+  +  +R 
Sbjct: 15  LDKGLEKTKENVFSKLTRAVAGKSKVDDEVLDDLEEILVTSDVGVDTTIKIIRRI-EERV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129
           A+D  VS   +   +   I  +L   +   N +++      P+VILVVGVNGVGKTT IG
Sbjct: 74  ARDKYVSTSELNSILKSEITALLTENNTGDNGEWTLPEGTHPYVILVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KV L A DTFR+AA++Q++IW DR     V  ++G+D A++A++  + A
Sbjct: 134 KLAWQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVVKQQMGADPASVAFDTLQSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +TGQNA  Q 
Sbjct: 194 KANGADVVIIDTAGRLHNKVGLMNELKKIKDVMKKVVPEAPHEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F
Sbjct: 254 RQFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLF 305


>gi|240127274|ref|ZP_04739935.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268685639|ref|ZP_06152501.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268625923|gb|EEZ58323.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 402

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 101 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 160

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 161 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 220

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A
Sbjct: 221 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAA 279

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 280 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 339

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 340 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 396


>gi|86157101|ref|YP_463886.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773612|gb|ABC80449.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 444

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 121/276 (43%), Positives = 175/276 (63%), Gaps = 15/276 (5%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKML--- 96
           +DD V  +LE++L  +DIGV  A +++E    K   K++S  +R+   + E I ++L   
Sbjct: 168 VDDSVLADLEEVLFTADIGVKTATRLLESAREKVRRKELSDPERLKAALREEIARILDLA 227

Query: 97  ------MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
                  PL+         RP V++VVGVNG GKTT +GKL+ K+   G KV+L AGDTF
Sbjct: 228 ATGGAAAPLAVG-----EARPWVVMVVGVNGSGKTTTVGKLAAKLQGGGHKVLLGAGDTF 282

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA +QL++WA+R SA  V  + G+D AA+ +EA ++   + VDV++ DTAGRLH  + 
Sbjct: 283 RAAAGEQLEVWAERVSAPIVRGKEGADPAAVCFEAVQRGAQEGVDVVLCDTAGRLHTKTP 342

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + K+ RV+ +    APH VL VLDAT GQNA+ Q   FH   G TG+ +TK+DGTA
Sbjct: 343 LMEELKKVQRVIGKAAAGAPHEVLLVLDATNGQNAIAQARQFHEALGVTGIALTKLDGTA 402

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +GG +I I    +IPV ++GVGE + DL+PF  ++F
Sbjct: 403 KGGVIIGICDELRIPVRYVGVGERVADLKPFSPREF 438


>gi|59802367|ref|YP_209079.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           FA 1090]
 gi|59719262|gb|AAW90667.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           FA 1090]
          Length = 421

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 120 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 179

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 180 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 239

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A
Sbjct: 240 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAA 298

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 299 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 358

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 359 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 415


>gi|85859850|ref|YP_462052.1| cell division protein ftsY [Syntrophus aciditrophicus SB]
 gi|85722941|gb|ABC77884.1| cell division protein ftsY [Syntrophus aciditrophicus SB]
          Length = 330

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/300 (40%), Positives = 182/300 (60%), Gaps = 11/300 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  KL +G A T   L   + DII   + +D  + +ELE+ LI +D+G A   +++E++ 
Sbjct: 26  FFDKLKRGLAKTRDLLLTDVDDIILGKKEIDQELFDELEEALIAADVGPAFTSELIEKMT 85

Query: 72  TKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
                K++     L +V       L+ K   PL  P    F+     ILVVGVNG GKTT
Sbjct: 86  DSVKRKELDSPERLKEVLRSTMKTLLKKNEAPLVIPEKQIFT-----ILVVGVNGTGKTT 140

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ +  + G  V + A DTFR+AAI+QL+IW+ R     +  +  SD +A+ ++A 
Sbjct: 141 TIGKLANQFKEEGRTVAMVAADTFRAAAIEQLEIWSQRVGVPLIKQKQDSDPSAVVFDAI 200

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A++ K +VLIIDTAGRLH    LM  + KM R++ R  P APH VL VLDATTGQNA+
Sbjct: 201 TAAKSGKAEVLIIDTAGRLHTQVNLMEEMKKMKRIMGRELPGAPHEVLLVLDATTGQNAV 260

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q +MF    G TG+++TK+DGT++GG ++ I   + IP+ ++G+GEG++DL  F +++F
Sbjct: 261 NQAKMFTDAVGVTGIVLTKLDGTSKGGVILRIAQEYNIPIRYIGIGEGLDDLREFNSEEF 320


>gi|319945301|ref|ZP_08019563.1| cell division protein FtsY [Lautropia mirabilis ATCC 51599]
 gi|319741871|gb|EFV94296.1| cell division protein FtsY [Lautropia mirabilis ATCC 51599]
          Length = 533

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/305 (40%), Positives = 183/305 (60%), Gaps = 16/305 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W  +L  G A T  +L      I S  R+D+ + EELE  L+ SD G      +++EL  
Sbjct: 236 WFARLRGGLARTRSQLG----SIFSRNRIDETLYEELETALLASDTGYGTTTWLLDELRE 291

Query: 73  K----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +    R     +++  L D+   + ++L PL KP + D +  P V+++ GVNG GKTT I
Sbjct: 292 RAQRDRINDAATLKTALIDI---LTELLSPLEKPIDVDRAD-PLVMMITGVNGAGKTTSI 347

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++ +      V+LAAGDTFR+AA +QL  W +R     + +E G D AA+A++A K 
Sbjct: 348 GKLARHLHQIDQSVLLAAGDTFRAAAREQLARWGERNQVHVIANE-GGDPAAVAFDAIKA 406

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            QA+KVDV+++DTAGRL     LM  + K+ RV+ +    APH VL VLD  TGQN L Q
Sbjct: 407 GQARKVDVVMVDTAGRLPTQRHLMDELKKIRRVIGKAMDGAPHEVLLVLDGNTGQNMLAQ 466

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK---IPVYFLGVGEGINDLEPFVAKD 305
           V+ F      TGL++TK+DGTA+GG +  +  T +   +PVYF+GVGEG+ DL+ F A++
Sbjct: 467 VQAFDEAVQLTGLVVTKLDGTAKGGAIAALAHTRRDNPLPVYFIGVGEGVEDLQAFSARE 526

Query: 306 FSAVI 310
           F+  +
Sbjct: 527 FATAL 531


>gi|240013197|ref|ZP_04720110.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           DGI18]
 gi|240081753|ref|ZP_04726296.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           FA19]
 gi|240114730|ref|ZP_04728792.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           PID18]
 gi|240116929|ref|ZP_04730991.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           PID1]
 gi|240120269|ref|ZP_04733231.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           PID24-1]
 gi|240122570|ref|ZP_04735526.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           PID332]
 gi|254492789|ref|ZP_05105960.1| signal recognition particle protein [Neisseria gonorrhoeae 1291]
 gi|260441459|ref|ZP_05795275.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           DGI2]
 gi|268597852|ref|ZP_06132019.1| signal recognition particle protein [Neisseria gonorrhoeae FA19]
 gi|268600381|ref|ZP_06134548.1| signal recognition particle protein [Neisseria gonorrhoeae PID18]
 gi|268602610|ref|ZP_06136777.1| signal recognition particle protein [Neisseria gonorrhoeae PID1]
 gi|268681160|ref|ZP_06148022.1| signal recognition particle protein [Neisseria gonorrhoeae PID332]
 gi|291044820|ref|ZP_06570529.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|226511829|gb|EEH61174.1| signal recognition particle protein [Neisseria gonorrhoeae 1291]
 gi|268551640|gb|EEZ46659.1| signal recognition particle protein [Neisseria gonorrhoeae FA19]
 gi|268584512|gb|EEZ49188.1| signal recognition particle protein [Neisseria gonorrhoeae PID18]
 gi|268586741|gb|EEZ51417.1| signal recognition particle protein [Neisseria gonorrhoeae PID1]
 gi|268621444|gb|EEZ53844.1| signal recognition particle protein [Neisseria gonorrhoeae PID332]
 gi|291011714|gb|EFE03710.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 417

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 295 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 354

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 355 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 411


>gi|294776167|ref|ZP_06741656.1| signal recognition particle-docking protein FtsY [Bacteroides
           vulgatus PC510]
 gi|294449990|gb|EFG18501.1| signal recognition particle-docking protein FtsY [Bacteroides
           vulgatus PC510]
          Length = 319

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/297 (42%), Positives = 182/297 (61%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  +R 
Sbjct: 15  LDKGLSKTKENVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EERV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129
           AKD  V+ Q +   + E I  +L   +   + DF+     +P+VI+VVGVNGVGKTT IG
Sbjct: 74  AKDKYVNTQELNKILREEIAALLTENNTVDSDDFTVPEGKKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++GSD A++A++    A
Sbjct: 134 KLAYQFKKAGKTVYLGAADTFRAAAVEQLDIWGERVGVPVIKQKMGSDPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V+K++   APH VL VLD +TGQNA  Q 
Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVADAPHEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEGI D++ F  K+F
Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISEQFKIPVKYIGLGEGIEDMQVFRKKEF 310


>gi|291527952|emb|CBK93538.1| signal recognition particle-docking protein FtsY [Eubacterium
           rectale M104/1]
          Length = 313

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 121/296 (40%), Positives = 179/296 (60%), Gaps = 4/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           + ++L  G   T   +  GI  + S    +DD   EELE++LI  D+GV   + I+E+L 
Sbjct: 10  FFKRLVSGLTKTRDNIVSGIDSLFSGFLHIDDDFYEELEEILIMGDLGVRATESIIEDL- 68

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +R  K+  ++        LI  +   +  +   + F +   V+LV+GVNGVGKTT +GK
Sbjct: 69  -QRKVKEQHIKEPAECKELLIESIKEQMKVEETAYRFENEKSVVLVIGVNGVGKTTTVGK 127

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+ + G KV++A  DTFR+AA DQLK WA+R   D +    G+D  A+ Y+A   ++
Sbjct: 128 LAGKLKEQGKKVVIAGADTFRAAAGDQLKEWANRAGVDMIGGAEGADPGAVVYDAVAASK 187

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DVL++DTAGRLHN   LM  +GK+ ++L+   P A    L VLDATTGQNAL Q  
Sbjct: 188 ARNADVLLVDTAGRLHNKKNLMNELGKINKILESEYPDAYRETLVVLDATTGQNALVQAR 247

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F  VA  +G+++TKMDGTA+GG  + I     +PV ++GVGE I+DL+ F + +F
Sbjct: 248 EFSDVAKISGIVLTKMDGTAKGGIAVAIQSELSVPVKYIGVGETIDDLQKFDSDEF 303


>gi|194099661|ref|YP_002002796.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           NCCP11945]
 gi|240015638|ref|ZP_04722178.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           FA6140]
 gi|240114036|ref|ZP_04728526.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           MS11]
 gi|268600099|ref|ZP_06134266.1| signal recognition particle protein [Neisseria gonorrhoeae MS11]
 gi|193934951|gb|ACF30775.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           NCCP11945]
 gi|268584230|gb|EEZ48906.1| signal recognition particle protein [Neisseria gonorrhoeae MS11]
 gi|317165145|gb|ADV08686.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 417

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 295 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 354

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 355 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 411


>gi|307297854|ref|ZP_07577660.1| signal recognition particle-docking protein FtsY [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306917114|gb|EFN47496.1| signal recognition particle-docking protein FtsY [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 303

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/304 (43%), Positives = 192/304 (63%), Gaps = 11/304 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L  G   T     + +  ++S   LD    EE+E+LLI SD+G   A++++E L  ++ 
Sbjct: 6   RLNDGLKRTREGFFKRVRKLLSFESLDSDSLEEIEELLILSDMGSETAEEVIEALKDRKD 65

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                ++ VL +V  L+  + +P   P       RP+V+ VVGVNG GKTT IGKLSK  
Sbjct: 66  KGKEPIE-VLKEV--LVEILDIPFEVP-----QARPYVVSVVGVNGTGKTTTIGKLSKLY 117

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  G KV+LAA DTFR+AA++QL+IW++R + DF+    G+D+AA+A++A + A +K  D
Sbjct: 118 SSNGNKVVLAACDTFRAAAVEQLRIWSERANVDFISQGQGADSAAVAFDAVRHAVSKGKD 177

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+I+DTAGRLH  S LM  + K+ RV+ +  P AP+ VL V+DATTGQN L Q + F   
Sbjct: 178 VVIVDTAGRLHTRSNLMEELKKVHRVIGKASPGAPNEVLLVIDATTGQNGLVQAKKFKEA 237

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              TG+++TK+DGTA+GG +  IV    IPV ++GVGE  +DL+PF +++F   +   L 
Sbjct: 238 VDVTGIVLTKLDGTAKGGIIFAIVKELGIPVRYIGVGEKEDDLKPFDSREF---VNALLS 294

Query: 316 YGEE 319
            GEE
Sbjct: 295 TGEE 298


>gi|323697659|ref|ZP_08109571.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp.
           ND132]
 gi|323457591|gb|EGB13456.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           desulfuricans ND132]
          Length = 463

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 120/297 (40%), Positives = 188/297 (63%), Gaps = 5/297 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL++G + T  ++ + I  ++S+   L+D   EE E++LI +D+G+  A +++  L  K 
Sbjct: 168 KLSEGISKTREQITKRIDGLLSAHSSLNDDFWEEFEEILIMADVGMEAAGQLMANL--KA 225

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            A+         D  +++   L  + K P      + P V++++GVNGVGKTT I KL+ 
Sbjct: 226 RARKAGTDNP-DDFKDILRAELEDIFKVPKRIKAVNPPEVLMMIGVNGVGKTTTIAKLAY 284

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +    G KV++AAGDTFR+AAIDQL++WADR    F     GSD AA+A+EA  +A ++ 
Sbjct: 285 RAQMQGRKVLIAAGDTFRAAAIDQLRVWADRLGTGFYAKAEGSDPAAVAFEAMDKAVSEG 344

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+L++DTAGRLH  S LM  + K+ RV+ +    APH  + V+DATTGQNAL Q ++F+
Sbjct: 345 YDLLLLDTAGRLHTKSNLMDELTKIKRVVGKKHEGAPHRNVLVIDATTGQNALSQTKLFN 404

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
              G   +I+TK+DGTA+GG ++ + + +K+P+ F+G+GE + DL PF  KDF+  +
Sbjct: 405 QAVGVDEIILTKLDGTAKGGVVVAVTLQNKLPITFVGLGEKMEDLRPFDGKDFAKAL 461


>gi|330721416|gb|EGG99477.1| Signal recognition particle receptor protein FtsY [gamma
           proteobacterium IMCC2047]
          Length = 278

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 111/255 (43%), Positives = 163/255 (63%), Gaps = 2/255 (0%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP 111
           L+ +D+GV     +++ L  +   K +     LY  + + +  ++ P + P   +   +P
Sbjct: 18  LLMADMGVEAVTHVIDSLTEQLERKTLKDSDALYAALKQELRDLIKPCALPLQVE-DKKP 76

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +VIL+VGVNG GKTT IGKL+K++   G  VMLAAGDTFR+AA++QL+ W  R     + 
Sbjct: 77  YVILMVGVNGAGKTTTIGKLAKRLQSEGRSVMLAAGDTFRAAAVEQLQEWGSRNDVPVIA 136

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G+D+A++ ++A + A+A+  DVLI DTAGRL N   LMA + K+ RV+ +LD  APH
Sbjct: 137 QHTGADSASVIFDAVESARARGADVLIADTAGRLQNKDNLMAELTKVKRVMAKLDDSAPH 196

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V+ VLDA TGQNAL Q  +F+   G TG+ MTK+DGTA+GG +  +     +P+ F+GV
Sbjct: 197 EVMLVLDAGTGQNALSQATLFNEAVGVTGISMTKLDGTAKGGVIFAVAKQLGLPIRFIGV 256

Query: 292 GEGINDLEPFVAKDF 306
           GE I+DL PF A +F
Sbjct: 257 GEKIDDLRPFDADEF 271


>gi|212693205|ref|ZP_03301333.1| hypothetical protein BACDOR_02715 [Bacteroides dorei DSM 17855]
 gi|237709947|ref|ZP_04540428.1| recognition particle-docking protein FtsY [Bacteroides sp.
           9_1_42FAA]
 gi|237725387|ref|ZP_04555868.1| recognition particle-docking protein FtsY [Bacteroides sp. D4]
 gi|265753599|ref|ZP_06088954.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           3_1_33FAA]
 gi|212664310|gb|EEB24882.1| hypothetical protein BACDOR_02715 [Bacteroides dorei DSM 17855]
 gi|229436074|gb|EEO46151.1| recognition particle-docking protein FtsY [Bacteroides dorei
           5_1_36/D4]
 gi|229456040|gb|EEO61761.1| recognition particle-docking protein FtsY [Bacteroides sp.
           9_1_42FAA]
 gi|263235313|gb|EEZ20837.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           3_1_33FAA]
          Length = 319

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/297 (42%), Positives = 182/297 (61%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  +R 
Sbjct: 15  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EERV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129
           AKD  V+ Q +   + E I  +L   +   + DF+     +P+VI+VVGVNGVGKTT IG
Sbjct: 74  AKDKYVNTQELNKILREEIAALLTENNTVDSDDFTVPEGKKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++GSD A++A++    A
Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLDIWGERVGVPVIKQKMGSDPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V+K++   APH VL VLD +TGQNA  Q 
Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVADAPHEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEGI D++ F  K+F
Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISEQFKIPVKYIGLGEGIEDMQVFRKKEF 310


>gi|251797474|ref|YP_003012205.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           JDR-2]
 gi|247545100|gb|ACT02119.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           JDR-2]
          Length = 332

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 132/320 (41%), Positives = 195/320 (60%), Gaps = 3/320 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           + +AS++ +      +G   T + L E + ++I+ R+ +D+   EELE++LI +D+GV  
Sbjct: 9   ESIASKTEAVTTIFKEGLTKTRVALVEKVEELITRRKKIDEEFYEELEEILIGADVGVNT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              +++EL  +   + +     L  + SE +  +L     P          VIL VGVNG
Sbjct: 69  VMTLIDELRAEVKKRKIEQAAELQPILSEKLIGLLKGEQNPGLQMAKSGITVILFVGVNG 128

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ K    G  V+LAAGDTFR+AAI+QL++W  R   D +  + GSD AA+
Sbjct: 129 VGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAAAIEQLEVWGQRVGVDVIKQQSGSDPAAV 188

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+ + VDVL+ DTAGRL N S LM  + K+ RV++R  P APH VL VLDATT
Sbjct: 189 MFDAVQAAKQRGVDVLLCDTAGRLQNKSNLMEELNKIFRVIQREIPDAPHEVLLVLDATT 248

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q ++F   +G TGL++TK+DGTA+GG +I I     +PV  +G+GE + DL+ F
Sbjct: 249 GQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRNELNLPVKLVGLGEKMTDLQEF 308

Query: 302 VAKDF-SAVITGCLDYGEEK 320
            +  F  A+  G +   EE+
Sbjct: 309 DSVQFVHALFAGLIQREEEQ 328


>gi|220915825|ref|YP_002491129.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953679|gb|ACL64063.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 469

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 122/276 (44%), Positives = 175/276 (63%), Gaps = 15/276 (5%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKML--- 96
           +DD V  +LE++L  +DIGV  A +++E    K   K++S  +R+   + E I ++L   
Sbjct: 193 VDDSVLADLEEVLFTADIGVKTATRLLESAREKVRRKELSDPERLKAALREEIARILDLA 252

Query: 97  ------MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
                  PL+         RP V++VVGVNG GKTT +GKL+ K+  AG KV+L AGDTF
Sbjct: 253 GTGGAAAPLAVG-----EARPWVVMVVGVNGSGKTTTVGKLAAKLQGAGHKVLLGAGDTF 307

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA +QL++WA+R SA  V  + G+D AA+ +EA ++   + VDV++ DTAGRLH    
Sbjct: 308 RAAAGEQLEVWAERVSAPVVRGKEGADPAAVCFEAVQRGAQEGVDVVLCDTAGRLHTKMP 367

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + K+ RV+ +    APH VL VLDAT GQNA+ Q   FH   G TG+ +TK+DGTA
Sbjct: 368 LMEELKKVQRVIGKAAAGAPHEVLLVLDATNGQNAIAQARQFHEALGVTGIALTKLDGTA 427

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +GG +I I    +IPV ++GVGE + DL+PF  ++F
Sbjct: 428 KGGVIIGICDELRIPVRYVGVGERVADLKPFSPREF 463


>gi|300692639|ref|YP_003753634.1| signal recognition particle (SRP) GTPase [Ralstonia solanacearum
           PSI07]
 gi|299079699|emb|CBJ52376.1| Signal recognition particle (SRP) GTPase [Ralstonia solanacearum
           PSI07]
          Length = 375

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 183/301 (60%), Gaps = 7/301 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W+ +L  G + TS    +G+T +    ++D+ + EELE  L+ +D GV   + ++ EL  
Sbjct: 81  WMSRLRSGLSKTS----KGLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLGELRR 136

Query: 73  KRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A+ + + + V   + +L+ ++L PL K        +P VI++ GVNG GKTT IGKL
Sbjct: 137 RVKAQRIETAEGVKTALRDLLIELLHPLEKTMVLG-REQPTVIMIAGVNGAGKTTSIGKL 195

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            K     G  V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A   A+A
Sbjct: 196 CKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNAARA 254

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+++ DTAGRL     LM  + K+ RV+ +    APH  L V+DA TGQNAL QV+ 
Sbjct: 255 RGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQNALAQVKA 314

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++F+  + 
Sbjct: 315 FDDTLGLTGLIITKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALL 374

Query: 312 G 312
           G
Sbjct: 375 G 375


>gi|254523884|ref|ZP_05135939.1| cell division protein [Stenotrophomonas sp. SKA14]
 gi|219721475|gb|EED40000.1| cell division protein [Stenotrophomonas sp. SKA14]
          Length = 437

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 118/256 (46%), Positives = 163/256 (63%), Gaps = 3/256 (1%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHR 110
           LI +D+GV     +VE L  +  +++ +    L     SELI  +L P++KP   D + +
Sbjct: 172 LITADVGVGATTDLVEGLRKRMKSREFADANALLAALRSELI-AILQPVAKPLVIDRNAK 230

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W +R     V
Sbjct: 231 PFVVLTVGVNGVGKTTTIGKLAKRFKDDGHSLMLAAGDTFRAAAVAQLQAWGERNGVAVV 290

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                +DAA++A++A +  +A+   VLI DTAGRLH  S LM  +GK+ RVL ++DP AP
Sbjct: 291 AQGQNADAASVAFDALQAGKARGTSVLIADTAGRLHTQSGLMNELGKIRRVLGKIDPTAP 350

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H VL V+D TTGQNAL Q+  F+A    TGL++TK+DGTA+GG +  +     IP+ F G
Sbjct: 351 HEVLMVIDGTTGQNALSQLRQFNAAVNVTGLVVTKLDGTAKGGVVFALAREFGIPIRFAG 410

Query: 291 VGEGINDLEPFVAKDF 306
           +GE   DL  F  + F
Sbjct: 411 IGERPEDLRVFDPEAF 426


>gi|325294603|ref|YP_004281117.1| signal recognition particle-docking protein FtsY
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065051|gb|ADY73058.1| signal recognition particle-docking protein FtsY
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 473

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 123/293 (41%), Positives = 181/293 (61%), Gaps = 4/293 (1%)

Query: 16  KLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL K F     K ++ +       R +D+ + EELE+ LI +D+GV    ++++ L  + 
Sbjct: 173 KLLKSFKEGLKKTRDALGLSAFKGREVDESLFEELEEKLILADVGVNTTLELIDYLRNEA 232

Query: 75  YAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             + + S  ++L  +   + +ML      FN   S +P VILV+GVNGVGKTT IGKL+K
Sbjct: 233 KKRKIKSSDQLLELLKGKLKEMLSKCRGSFN--ISEKPSVILVLGVNGVGKTTTIGKLAK 290

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           ++ + G  V+LAAGDTFR+AAI+QL++WA+R     +  + G+D AA+ ++A +  +AK 
Sbjct: 291 QLKEKGYCVVLAAGDTFRAAAIEQLEVWAERAGVRIIKGQEGTDPAAVVFDAIQSVKAKG 350

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+LI+DTAGRLHN   LM  I K+ +V+ R  P  P  +L VLDA TGQNA+ Q   F 
Sbjct: 351 DDILIVDTAGRLHNKDRLMKEIHKIKKVIGREFPGQPAEILLVLDANTGQNAISQARAFK 410

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            +   TG+ +TK+DGTA+GG +I I    KIP+  +G+GE I DL  F  K+F
Sbjct: 411 EITDVTGIALTKLDGTAKGGIVIAICNDLKIPIKLVGIGEKIEDLRKFDPKEF 463


>gi|197121124|ref|YP_002133075.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           sp. K]
 gi|196170973|gb|ACG71946.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           sp. K]
          Length = 469

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 122/276 (44%), Positives = 175/276 (63%), Gaps = 15/276 (5%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKML--- 96
           +DD V  +LE++L  +DIGV  A +++E    K   K++S  +R+   + E I ++L   
Sbjct: 193 VDDAVLADLEEVLFTADIGVKTATRLLESAREKVRRKELSDPERLKAALREEIARILDLA 252

Query: 97  ------MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
                  PL+         RP V++VVGVNG GKTT +GKL+ K+  AG KV+L AGDTF
Sbjct: 253 GTGGAAAPLAVG-----EARPWVVMVVGVNGSGKTTTVGKLAAKLQGAGHKVLLGAGDTF 307

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA +QL++WA+R SA  V  + G+D AA+ +EA ++   + VDV++ DTAGRLH    
Sbjct: 308 RAAAGEQLEVWAERVSAPVVRGKEGADPAAVCFEAVQRGAQEGVDVVLCDTAGRLHTKMP 367

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + K+ RV+ +    APH VL VLDAT GQNA+ Q   FH   G TG+ +TK+DGTA
Sbjct: 368 LMEELKKVQRVIGKAAAGAPHEVLLVLDATNGQNAIAQARQFHEALGVTGIALTKLDGTA 427

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +GG +I I    +IPV ++GVGE + DL+PF  ++F
Sbjct: 428 KGGVIIGICDELRIPVRYVGVGERVADLKPFSPREF 463


>gi|150005788|ref|YP_001300532.1| recognition particle-docking protein FtsY [Bacteroides vulgatus
           ATCC 8482]
 gi|254882030|ref|ZP_05254740.1| recognition particle-docking protein FtsY [Bacteroides sp.
           4_3_47FAA]
 gi|319640962|ref|ZP_07995670.1| hypothetical protein HMPREF9011_01267 [Bacteroides sp. 3_1_40A]
 gi|149934212|gb|ABR40910.1| recognition particle-docking protein FtsY [Bacteroides vulgatus
           ATCC 8482]
 gi|254834823|gb|EET15132.1| recognition particle-docking protein FtsY [Bacteroides sp.
           4_3_47FAA]
 gi|317387407|gb|EFV68278.1| hypothetical protein HMPREF9011_01267 [Bacteroides sp. 3_1_40A]
          Length = 319

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 125/297 (42%), Positives = 182/297 (61%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  +R 
Sbjct: 15  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EERV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129
           AKD  V+ Q +   + E I  +L   +   + DF+     +P+VI+VVGVNGVGKTT IG
Sbjct: 74  AKDKYVNTQELNKILREEIAALLTENNTVDSDDFTVPEGKKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++GSD A++A++    A
Sbjct: 134 KLAYQFKKAGKTVYLGAADTFRAAAVEQLDIWGERVGVPVIKQKMGSDPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V+K++   APH VL VLD +TGQNA  Q 
Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVADAPHEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEGI D++ F  K+F
Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISEQFKIPVKYIGLGEGIEDMQVFRKKEF 310


>gi|239999853|ref|ZP_04719777.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           35/02]
 gi|268595664|ref|ZP_06129831.1| signal recognition particle protein [Neisseria gonorrhoeae 35/02]
 gi|268549053|gb|EEZ44471.1| signal recognition particle protein [Neisseria gonorrhoeae 35/02]
          Length = 417

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 2/297 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNIT-VISQTTGDSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 295 KARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 354

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 355 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 411


>gi|291546251|emb|CBL19359.1| signal recognition particle-docking protein FtsY [Ruminococcus sp.
           SR1/5]
          Length = 312

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 131/306 (42%), Positives = 184/306 (60%), Gaps = 10/306 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +A E   + ++L  G   T   +  G   I S    +DD   EELE++LI  DIG+    
Sbjct: 1   MAEEKKGFFKRLVSGLTKTRDNIVAGFDSIFSGFSSIDDDFYEELEEILIMGDIGINATT 60

Query: 65  KIVEEL---LTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            I+E L   + +++ K+ S  +++L D    I K +   S    ++F +R  VILV+GVN
Sbjct: 61  SILEHLKEQVAEQHIKEPSQCKQLLIDS---IKKQMQVESTE--YEFENRKSVILVIGVN 115

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT +GKL+ K+ D G KV+L A DTFR+AA +QL  WA+R   + +  + G+D A+
Sbjct: 116 GVGKTTSVGKLAGKLKDQGKKVILGAADTFRAAAGEQLTQWANRAGVEIIGGQDGADPAS 175

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A   A+A+  D+LI DTAGRLHN   LM  + K+ R+L+R  P A    L VLD T
Sbjct: 176 VVYDAVAAAKARNADILICDTAGRLHNKKNLMEELRKIYRILEREYPEAYLETLVVLDGT 235

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q   F  VA  TG+I+TK+DGTA+GG  + I     IPV ++GVGE I+DL+ 
Sbjct: 236 TGQNALSQARQFAEVANVTGIILTKLDGTAKGGIAVAIQSELDIPVKYIGVGESIDDLQK 295

Query: 301 FVAKDF 306
           F A  F
Sbjct: 296 FDADAF 301


>gi|108804224|ref|YP_644161.1| signal recognition particle-docking protein FtsY [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765467|gb|ABG04349.1| signal recognition particle-docking protein FtsY [Rubrobacter
           xylanophilus DSM 9941]
          Length = 348

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 130/277 (46%), Positives = 179/277 (64%), Gaps = 12/277 (4%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLM 97
           D+   E +E++LI SD+GV    K+V+ L  +   K+++    ++R+L +     H   M
Sbjct: 80  DEEFWERVEEILIASDVGVPTTAKLVQRLEQEALEKNITGAGELRRLLVE-----HAARM 134

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            L  P   D SHRP VIL+VGVNG GKTT IGKL++ +      VM AAGDTFR+AAI+Q
Sbjct: 135 -LEGPVEIDLSHRPTVILMVGVNGTGKTTTIGKLARHLP--ARSVMFAAGDTFRAAAIEQ 191

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+ W +R  A  V  E G+DAAA+A++A + A+ + V+VLI+DTAGRLH    LMA + K
Sbjct: 192 LQKWGERVGAPVVARERGADAAAVAHDAVEAAKREGVEVLIVDTAGRLHTKVNLMAELEK 251

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RV+ R  P APH VL  +DATTGQN LRQ  MF  VAG TG+++TK+DGTA+GG  + 
Sbjct: 252 VRRVIGRQLPGAPHEVLLTVDATTGQNGLRQARMFKEVAGVTGVVLTKLDGTAKGGIALA 311

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           I     +P+  + VGEG+ DL PF A+ F+  + G L
Sbjct: 312 IADEVGLPIKLVSVGEGVEDLHPFDARQFAEALFGEL 348


>gi|262067701|ref|ZP_06027313.1| signal recognition particle-docking protein FtsY [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378426|gb|EFE85944.1| signal recognition particle-docking protein FtsY [Fusobacterium
           periodonticum ATCC 33693]
          Length = 368

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 130/300 (43%), Positives = 185/300 (61%), Gaps = 11/300 (3%)

Query: 15  RKLTK---GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           ++LTK   GF S   KLK   T   S  ++DD + EELEDLLI+SD+G+ +   ++ EL 
Sbjct: 74  QRLTKSKEGFFS---KLKNIFT---SKSKIDDSIYEELEDLLIQSDVGLGMTTNLINELE 127

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K  A  +S    +Y++  +L+   L+      +    ++ +VIL+VGVNGVGKTT IGK
Sbjct: 128 KKVKANKISETSEVYEILKDLMSDFLLSQDSKVHLK-DNKINVILIVGVNGVGKTTTIGK 186

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G KV+L AGDTFR+AA++QL+ WA R   D V    G+D A++ Y+   +A+
Sbjct: 187 LALKYKKIGKKVLLGAGDTFRAAAVEQLEEWARRADVDIVKGREGADPASVVYDTLSKAE 246

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A K DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D TTGQN L Q +
Sbjct: 247 ATKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAK 306

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL  F AKDF   I
Sbjct: 307 EFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIEDLIEFNAKDFVEAI 366


>gi|194365324|ref|YP_002027934.1| signal recognition particle-docking protein FtsY [Stenotrophomonas
           maltophilia R551-3]
 gi|194348128|gb|ACF51251.1| signal recognition particle-docking protein FtsY [Stenotrophomonas
           maltophilia R551-3]
          Length = 441

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 116/255 (45%), Positives = 162/255 (63%), Gaps = 1/255 (0%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           LI +D+GV     +VE L  +  A++ V    +L  +   +  +L P++KP   D + +P
Sbjct: 176 LITADVGVGATTDLVEGLRKRMKAREFVDANALLAALRAELIAILQPVAKPLVIDRTAKP 235

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W +R     V 
Sbjct: 236 FVVLTVGVNGVGKTTTIGKLAKRFKDEGHSLMLAAGDTFRAAAVAQLQAWGERNGVAVVA 295

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
               +DAA++A++A +  +A+   VLI DTAGRLH  S LM  +GK+ RVL ++DP APH
Sbjct: 296 QGQNADAASVAFDALQAGKARGTSVLIADTAGRLHTQSGLMNELGKIRRVLGKIDPTAPH 355

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            VL V+D TTGQNAL Q+  F+A    TGL++TK+DGTA+GG +  +     IP+ F G+
Sbjct: 356 EVLMVIDGTTGQNALSQLRQFNAAVNVTGLVVTKLDGTAKGGVVFALAREFGIPIRFAGI 415

Query: 292 GEGINDLEPFVAKDF 306
           GE   DL  F  + F
Sbjct: 416 GERPEDLRVFDPEAF 430


>gi|303328099|ref|ZP_07358538.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp.
           3_1_syn3]
 gi|302861925|gb|EFL84860.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp.
           3_1_syn3]
          Length = 534

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 122/298 (40%), Positives = 180/298 (60%), Gaps = 3/298 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K+++G + T  +    +  + +    LD+   EELE+L I +D+G   + ++VE L  K 
Sbjct: 233 KISEGLSRTREQFARRLDTLFAGHGELDEQFWEELEELFIMADLGYEPSLELVERL--KE 290

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            A+     R       L+ ++      P      + P V+L++GVNGVGKTT I KL+ +
Sbjct: 291 RARREKATRAEQARELLLAELEEIFHAPRRISAVNPPEVVLMIGVNGVGKTTTIAKLAHR 350

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G KVM+AAGDTFR+AAI+QL++WA+R  A F     GSD A++A+EA ++A  + V
Sbjct: 351 ARMQGKKVMIAAGDTFRAAAIEQLQVWAERVGALFHARPAGSDPASVAFEAVERAVREGV 410

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVL +DTAGRL     LM  + K+ +VL +  P APH  + VLDATTGQNAL Q ++F  
Sbjct: 411 DVLFVDTAGRLQTKVNLMEELTKIRQVLGKKHPGAPHRSILVLDATTGQNALSQTKLFKE 470

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            AG   LI+TK+DGTA+GG  I + + H +P+ F+G+GE + DL PF   D++  + G
Sbjct: 471 AAGVDELILTKLDGTAKGGVAIAVAMQHHLPITFVGLGEKMEDLRPFNGADYARALLG 528


>gi|150390510|ref|YP_001320559.1| signal recognition particle-docking protein FtsY [Alkaliphilus
           metalliredigens QYMF]
 gi|149950372|gb|ABR48900.1| signal recognition particle-docking protein FtsY [Alkaliphilus
           metalliredigens QYMF]
          Length = 423

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 143/317 (45%), Positives = 198/317 (62%), Gaps = 20/317 (6%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDII-----SSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           LS  ++L +G + T    K+GIT  +     S +++D+ + EELE++LI SDIGV    +
Sbjct: 118 LSLFKRLKEGLSKT----KQGITGKVDELLKSYKKIDEALFEELEEILITSDIGVKTTME 173

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFSHRPHVILVVGVNGV 122
           I++ L  K   K VS       V EL+ + L+ + +       +    P ++LVVGVNGV
Sbjct: 174 IIDGLRDKIKEKKVSEPE---QVKELLKEALIEILQRLPDAQVNIEPGPAIVLVVGVNGV 230

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGK++ +    G KV+LAAGDTFR+AA +QL+IWA R   + V  + GSD AA+ 
Sbjct: 231 GKTTSIGKMAHRFKQDGKKVLLAAGDTFRAAASEQLEIWAQRVGVEVVKHQEGSDPAAVI 290

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+KVDVLI DTAGRLHN   LM  +GK+ +V+ R    A   VL VLDATTG
Sbjct: 291 FDAIQAAKARKVDVLICDTAGRLHNKKNLMNELGKVFKVVDREYGEATKEVLLVLDATTG 350

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA++Q + F  VA  TGLI+TK+DGTA+GG +I I     IPV  +GVGE + DL+ F 
Sbjct: 351 QNAIQQAKTFKEVANITGLILTKLDGTAKGGVVIGISQELTIPVKLIGVGEKMEDLQQFN 410

Query: 303 AKDFSAVITGCLDYGEE 319
           A DF   +     +GEE
Sbjct: 411 ATDFVKAL-----FGEE 422


>gi|254671832|emb|CBA03981.1| cell division protein [Neisseria meningitidis alpha275]
          Length = 350

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 187/304 (61%), Gaps = 2/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q++ + S     +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   
Sbjct: 42  QQLKNTSSVGAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEAT 101

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + +++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG 
Sbjct: 102 EYLMKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGA 161

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ 
Sbjct: 162 GKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVC 220

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  G
Sbjct: 221 FDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIG 280

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF 
Sbjct: 281 QNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFD 340

Query: 303 AKDF 306
           A+ F
Sbjct: 341 ARAF 344


>gi|323954782|gb|EGB50563.1| signal recognition particle-docking protein FtsY [Escherichia coli
           H263]
          Length = 259

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 108/243 (44%), Positives = 159/243 (65%), Gaps = 2/243 (0%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           K++  L      K +     LY +  E + ++L  + +P N +    P VIL+VGVNGVG
Sbjct: 9   KLITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVG 67

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ +
Sbjct: 68  KTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIF 127

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQ
Sbjct: 128 DAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 187

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N + Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A
Sbjct: 188 NGVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKA 247

Query: 304 KDF 306
            DF
Sbjct: 248 DDF 250


>gi|118594541|ref|ZP_01551888.1| Signal recognition particle GTPase, FtsY protein [Methylophilales
           bacterium HTCC2181]
 gi|118440319|gb|EAV46946.1| Signal recognition particle GTPase, FtsY protein [Methylophilales
           bacterium HTCC2181]
          Length = 385

 Score =  219 bits (557), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 179/301 (59%), Gaps = 11/301 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
             +  K+ KG   T  KL   +T++ S  ++D+   EELE +L+ +D+G+        +L
Sbjct: 85  FGFAEKIKKGLTKTREKLASPLTELFSFNKIDNSFYEELETILLTADVGIPAT-----DL 139

Query: 71  LTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKT 125
           L       V   +++    + EL+ K ++ L              P VI++VGVNG GKT
Sbjct: 140 LISNVKASVQKDKIVDPKALKELLKKNMVALLSTVEEQLVVKKTSPFVIMMVGVNGTGKT 199

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K ++D    V++AAGDTFR+AA++QL++W +R     +  E G D +A+ ++A
Sbjct: 200 TTIGKLTKYLTDQNQSVLIAAGDTFRAAAVEQLQVWGERNKVSVISQETG-DPSAVIFDA 258

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+AKK+DV I DTAGRL     L+  I K+ +V+ +    APH V+ V+DA TGQNA
Sbjct: 259 INSAKAKKIDVAIADTAGRLPTQKHLLDEITKIKKVMAKCHESAPHEVMLVIDANTGQNA 318

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q++ F+   G TGL++TK+DGTA+GG L  I      P+ F+GVGEGI+DL  F AK+
Sbjct: 319 INQLKAFNEALGVTGLVITKLDGTAKGGILAAIAKEIPTPIRFIGVGEGIDDLRIFNAKE 378

Query: 306 F 306
           +
Sbjct: 379 Y 379


>gi|309389188|gb|ADO77068.1| signal recognition particle-docking protein FtsY [Halanaerobium
           praevalens DSM 2228]
          Length = 307

 Score =  219 bits (557), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 121/299 (40%), Positives = 188/299 (62%), Gaps = 4/299 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +++KL  G   T     + +T+I + R  +DD + EELE++LI++D+GV     ++++
Sbjct: 1   MGFLQKLKAGLKKTKAGFVDKVTNIFTGRSNIDDQLFEELEEVLIQADVGVKTTFTLIDK 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L      ++V+    L    +   K L+  +   +++F++  ++I++VGVNG GKTT I 
Sbjct: 61  LKEDVDNEEVTEPEELMSYFQKELKELLQ-NDEGDFNFNNELNIIMMVGVNGAGKTTTIA 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVMLAAGDTFR+ AI+QL+IW DR   + +  + GSDAAA+AY+A + A
Sbjct: 120 KLAGRYKKEGKKVMLAAGDTFRAGAIEQLQIWGDRLGVNVISQQEGSDAAAVAYDAIQSA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH--APHSVLQVLDATTGQNALR 247
           +AK VD+LI+DTAGRLH  + LM  + K+ RV++R      A   VL VLDATTGQNA+ 
Sbjct: 180 KAKDVDLLIVDTAGRLHTQTNLMKELKKVKRVIEREAEAIGAGVEVLLVLDATTGQNAIS 239

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++F+      G+ +TK+DGTA+GG +I +     IP+  +GVGE   DL+ F  + F
Sbjct: 240 QAKLFNQAVNVDGVALTKLDGTAKGGIVITVKNELDIPIKLIGVGEAAEDLQNFDPEQF 298


>gi|258592176|emb|CBE68485.1| Cell division transporter substrate-binding protein FtsY (Signal
           recognition particle receptor) [NC10 bacterium 'Dutch
           sediment']
          Length = 314

 Score =  219 bits (557), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 116/266 (43%), Positives = 171/266 (64%), Gaps = 8/266 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVL-YDVSELIHKMLMPLSK 101
           E LE+ LI +D G A+AQ+++  L  +   +D+S    V+  L + + E++  +  P   
Sbjct: 45  EALEEALIAADFGPALAQQLMTPLHQRLSRRDLSNLDQVEAALKHGILEILSGVAPP--- 101

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           P   D   RP V+L +G+NG GKTT IGKL+ ++   G  V+LA  DTFR+AAI+QL +W
Sbjct: 102 PSATDHQTRPQVLLFLGINGSGKTTTIGKLASRLIAEGGHVVLAGADTFRAAAIEQLGLW 161

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             R  AD VC + G+D +A+ ++A + A ++    L+IDTAGRLH    LM  + K+ RV
Sbjct: 162 GQRVGADVVCHQAGADPSAVVFDAVQAACSRGASHLLIDTAGRLHTKRNLMEELKKIQRV 221

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           + R  P APH  + VLDAT+G NAL Q + FH   G TGLI+TK+DGTA+GG ++ I   
Sbjct: 222 VSRQIPDAPHQRIMVLDATSGLNALVQAKHFHEAVGLTGLILTKLDGTAKGGVVVAIADR 281

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFS 307
            K+P+ F+G+GEG++DL+PFV + F+
Sbjct: 282 LKLPITFVGLGEGVDDLQPFVPETFT 307


>gi|189501986|ref|YP_001957703.1| hypothetical protein Aasi_0573 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497427|gb|ACE05974.1| hypothetical protein Aasi_0573 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 311

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 122/295 (41%), Positives = 181/295 (61%), Gaps = 6/295 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            KL K    T          ++  +  +DD + + LE+LL+ +DIG+    KI++ LL  
Sbjct: 13  EKLDKALTPTKTSFWNNFNKVLVGKSTVDDEILDRLEELLLTADIGIDTTLKIID-LLEM 71

Query: 74  RYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           R A+D  ++V  +   + E I  ++  L++      +  PH+IL+VG+NGVGKTT IGKL
Sbjct: 72  RVARDKYLNVAELESILREEIESLITILNQA--EQNTALPHIILIVGINGVGKTTTIGKL 129

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +     AG KV+L A DTFR+AAI+QLK+W +R     V   + +D +A+AY+  ++A  
Sbjct: 130 AALYKQAGKKVILGAADTFRAAAIEQLKMWGERVGVPVVAHSMHTDPSAVAYDTVQKAIQ 189

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ DV IIDTAGRLH    LM  + K+ R +++L P APH +L VLDATTGQNA  Q + 
Sbjct: 190 EQADVAIIDTAGRLHTKVNLMNELSKIRRTIEKLMPAAPHEILLVLDATTGQNAFIQTKA 249

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F       GL++TK+DGTA+GG +I I+    +PV ++GVGE I+DL+ F  K+F
Sbjct: 250 FTEATAVNGLVVTKLDGTAKGGVVIGIIDQFHVPVKYIGVGEQIDDLQLFDEKEF 304


>gi|237740647|ref|ZP_04571128.1| signal recognition particle receptor FtsY [Fusobacterium sp.
           2_1_31]
 gi|229422664|gb|EEO37711.1| signal recognition particle receptor FtsY [Fusobacterium sp.
           2_1_31]
          Length = 362

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 130/300 (43%), Positives = 186/300 (62%), Gaps = 11/300 (3%)

Query: 15  RKLTK---GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           ++LTK   GF S   KLK   T   S  ++DD + EELEDLLI+SD+G+ +   ++ +L 
Sbjct: 68  QRLTKSKEGFFS---KLKNIFT---SKSKIDDSIYEELEDLLIQSDVGLGMTTNLINDLE 121

Query: 72  TKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K  A  +S    +Y++ + L+ + L+      +    +R +VIL+VGVNGVGKTT IGK
Sbjct: 122 KKVKANKISETSEVYEILKGLMSEFLLSQDSKVHLK-DNRINVILIVGVNGVGKTTTIGK 180

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G KV+L AGDTFR+AA++QL+ WA R   D V    G+D A++ Y+   +A+
Sbjct: 181 LALKYKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADPASVVYDTLSKAE 240

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A K DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D TTGQN L Q +
Sbjct: 241 ATKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAK 300

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL  F AKDF   I
Sbjct: 301 EFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIEDLIEFNAKDFVEAI 360


>gi|219681411|ref|YP_002467796.1| cell division protein FtsY [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219681967|ref|YP_002468351.1| cell division protein FtsY [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471085|ref|ZP_05635084.1| cell division protein FtsY [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621700|gb|ACL29856.1| cell division protein FtsY [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624254|gb|ACL30409.1| cell division protein FtsY [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 378

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 116/282 (41%), Positives = 176/282 (62%), Gaps = 6/282 (2%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L + I  I  S+++D+ + EELE+ ++ +DIG+    +I+  L+     +D+     LY 
Sbjct: 94  LGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLKNSEKLYF 153

Query: 88  VSELIHKMLMPLSK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  L  KM   L K   P     SH P VILVVGVNG GKTT + KL++K    G  +ML
Sbjct: 154 L--LKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSIML 210

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+A I+QL+      +   +    GSD AA+ ++A K A++KK+DVLIIDTAGR
Sbjct: 211 AAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGR 270

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LHN   L+  + K++RV+K++D  APH  L ++D+  GQN ++Q E+FH     TG+I+T
Sbjct: 271 LHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEIFHKALNLTGIIIT 330

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           K+DGTA+GG +  +    +IP+ ++G+GE + DL  F +++F
Sbjct: 331 KLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFNSQEF 372


>gi|39996234|ref|NP_952185.1| cell division protein FtsY [Geobacter sulfurreducens PCA]
 gi|39983114|gb|AAR34508.1| cell division protein FtsY [Geobacter sulfurreducens PCA]
 gi|298505246|gb|ADI83969.1| signal recognition particle GTPase FtsY [Geobacter sulfurreducens
           KN400]
          Length = 350

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 119/275 (43%), Positives = 174/275 (63%), Gaps = 6/275 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---EELLTKRYAKDVSVQRVLYDVSEL 91
           ++  + +D    EELE++LI +D+GV    +++   E+ L++   KD    R    + E 
Sbjct: 73  VLGKKEIDADTLEELEEILITADLGVQTTVELIRGLEQRLSRNELKDGEALR--EALKED 130

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           IH  L   +   +   +  P VI+V+GVNGVGKTT IGKL+ + +  G KV+LAAGDTFR
Sbjct: 131 IHGRLARDAHQLDVTGAS-PFVIMVIGVNGVGKTTTIGKLAARFTAQGKKVILAAGDTFR 189

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           +AA +QL+IW +RT  D +  + G+D +A+ +++ K A A+  D+LI+DTAGRLH    L
Sbjct: 190 AAAAEQLQIWGERTGVDVIRHKEGADPSAVVFDSIKAAVARGADILIVDTAGRLHTKVNL 249

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + K+ R++ R  P APH  L VLDA TGQNAL Q ++F   A  TG+ +TK+DGTA+
Sbjct: 250 MEELKKVRRIMSREIPGAPHETLLVLDAATGQNALSQAKLFKEAAQVTGIALTKLDGTAK 309

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GG ++ I    +IPV ++GVGEGI+DL  F    F
Sbjct: 310 GGIVVAICNEFRIPVRYIGVGEGIDDLRDFDPSQF 344


>gi|311085773|gb|ADP65855.1| cell division protein FtsY [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086350|gb|ADP66431.1| cell division protein FtsY [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 298

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 116/282 (41%), Positives = 176/282 (62%), Gaps = 6/282 (2%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L + I  I  S+++D+ + EELE+ ++ +DIG+    +I+  L+     +D+     LY 
Sbjct: 14  LGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLKNSEKLYF 73

Query: 88  VSELIHKMLMPLSK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  L  KM   L K   P     SH P VILVVGVNG GKTT + KL++K    G  +ML
Sbjct: 74  L--LKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSIML 130

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+A I+QL+      +   +    GSD AA+ ++A K A++KK+DVLIIDTAGR
Sbjct: 131 AAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGR 190

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LHN   L+  + K++RV+K++D  APH  L ++D+  GQN ++Q E+FH     TG+I+T
Sbjct: 191 LHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEIFHKALNLTGIIIT 250

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           K+DGTA+GG +  +    +IP+ ++G+GE + DL  F +++F
Sbjct: 251 KLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFNSQEF 292


>gi|294782274|ref|ZP_06747600.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           1_1_41FAA]
 gi|294480915|gb|EFG28690.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           1_1_41FAA]
          Length = 369

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 130/300 (43%), Positives = 186/300 (62%), Gaps = 11/300 (3%)

Query: 15  RKLTK---GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           ++LTK   GF S   KLK   T   S  ++DD + EELEDLLI+SD+G+ +   ++ +L 
Sbjct: 75  QRLTKSKEGFFS---KLKNIFT---SKSKIDDSIYEELEDLLIQSDVGLGMTTNLINDLE 128

Query: 72  TKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K  A  +S    +Y++ + L+ + L+      +    +R +VIL+VGVNGVGKTT IGK
Sbjct: 129 KKVKANKISETSEVYEILKGLMSEFLLSQDSKVHLK-DNRINVILIVGVNGVGKTTTIGK 187

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G KV+L AGDTFR+AA++QL+ WA R   D V    G+D A++ Y+   +A+
Sbjct: 188 LALKYKKLGKKVLLGAGDTFRAAAVEQLEEWARRADVDIVKGREGADPASVVYDTLSKAE 247

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A K DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D TTGQN L Q +
Sbjct: 248 ATKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAK 307

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL  F AKDF   I
Sbjct: 308 EFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIEDLIEFNAKDFVEAI 367


>gi|311086926|gb|ADP67006.1| cell division protein FtsY [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 378

 Score =  218 bits (556), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 116/282 (41%), Positives = 176/282 (62%), Gaps = 6/282 (2%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L + I  I  S+++D+ + EELE+ ++ +DIG+    +I+  L+     +D+     LY 
Sbjct: 94  LGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLKNSEKLYF 153

Query: 88  VSELIHKMLMPLSK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  L  KM   L K   P     SH P VILVVGVNG GKTT + KL++K    G  +ML
Sbjct: 154 L--LKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSIML 210

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+A I+QL+      +   +    GSD AA+ ++A K A++KK+DVLIIDTAGR
Sbjct: 211 AAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGR 270

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LHN   L+  + K++RV+K++D  APH  L ++D+  GQN ++Q E+FH     TG+I+T
Sbjct: 271 LHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEIFHKALNLTGIIIT 330

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           K+DGTA+GG +  +    +IP+ ++G+GE + DL  F +++F
Sbjct: 331 KLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFNSQEF 372


>gi|58697425|ref|ZP_00372729.1| signal recognition particle-docking protein FtsY [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536153|gb|EAL59753.1| signal recognition particle-docking protein FtsY [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 233

 Score =  218 bits (556), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 109/222 (49%), Positives = 148/222 (66%), Gaps = 2/222 (0%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           I  +L P+ +P     + +PH+I+V GVNG GKTT IGKL+ K  +    VML A DTFR
Sbjct: 13  IEAILNPVVQPL--ILNKKPHIIMVCGVNGNGKTTTIGKLAYKYKEMRKSVMLVACDTFR 70

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           +AA +QL IWA+R+    V  E GSD+A++AY A  QA    VDV++IDTAGRL NN  L
Sbjct: 71  AAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQAIKDNVDVVLIDTAGRLQNNVNL 130

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + K+ R +K+LD  APH V+ VLDATTGQNA  Q+E F  +   TGLI+TK+DGTA+
Sbjct: 131 MEELSKIYRTIKKLDGTAPHDVILVLDATTGQNAYSQLEAFSKMVNVTGLIVTKLDGTAK 190

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           GG +I +   +KI ++ +G+GE I DL  F +K+F+  +  C
Sbjct: 191 GGVVIGLAEAYKIKLHAIGIGENIEDLREFTSKEFAEALFNC 232


>gi|311087514|gb|ADP67593.1| cell division protein FtsY [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 298

 Score =  218 bits (556), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 116/282 (41%), Positives = 176/282 (62%), Gaps = 6/282 (2%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L + I  I  S+++D+ + EELE+ ++ +DIG+    +I+  L+     +D+     LY 
Sbjct: 14  LGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLKNSEKLYF 73

Query: 88  VSELIHKMLMPLSK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  L  KM   L K   P     SH P VILVVGVNG GKTT + KL++K    G  +ML
Sbjct: 74  L--LKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGAGKTTTVAKLAEKYKLEGKSIML 130

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+A I+QL+      +   +    GSD AA+ ++A K A++KK+DVLIIDTAGR
Sbjct: 131 AAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGR 190

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LHN   L+  + K++RV+K++D  APH  L ++D+  GQN ++Q E+FH     TG+I+T
Sbjct: 191 LHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEIFHKALNLTGIIIT 250

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           K+DGTA+GG +  +    +IP+ ++G+GE + DL  F +++F
Sbjct: 251 KLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFNSQEF 292


>gi|256847358|ref|ZP_05552804.1| signal recognition particle-docking protein FtsY [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256716022|gb|EEU30997.1| signal recognition particle-docking protein FtsY [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 444

 Score =  218 bits (556), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 120/275 (43%), Positives = 167/275 (60%), Gaps = 10/275 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R +D+   E+LEDL+I SD+G  +A K+ + L   R    +   +   DVS +I + ++ 
Sbjct: 160 RHVDEDFFEDLEDLMIESDVGYDMAMKLSDSL---REEVKLQNAKSKQDVSNVIIQKMVE 216

Query: 99  LSKPFNWD------FSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           L      D      F+   P VI+ VGVNG GKTT IGK++ +  + G KV+LAA DTFR
Sbjct: 217 LYDDAGQDEQTGINFAQSGPTVIMFVGVNGAGKTTTIGKMAARFKNEGKKVLLAAADTFR 276

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           + A +QL +WA R   D V      D AA+ ++  K+A+A+  DVL +DTAGRL N   L
Sbjct: 277 AGATEQLDVWAKRDGVDIVTGPENGDPAAVVFDGVKKAKAEGYDVLFVDTAGRLQNKVNL 336

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + KM R+L R  P APH VL VLDATTGQNAL Q ++F      TG+++TK+DGTAR
Sbjct: 337 MNELAKMKRILTREIPDAPHEVLLVLDATTGQNALSQAKLFKESTDVTGIVLTKLDGTAR 396

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GG ++ I     +PV F+G+GE + DL+ F A +F
Sbjct: 397 GGIVLAIRNELHLPVKFVGLGEKVTDLQEFDASEF 431


>gi|325269254|ref|ZP_08135873.1| cell division protein FtsY [Prevotella multiformis DSM 16608]
 gi|324988483|gb|EGC20447.1| cell division protein FtsY [Prevotella multiformis DSM 16608]
          Length = 316

 Score =  218 bits (556), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 126/297 (42%), Positives = 183/297 (61%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T   +   +   ++ + ++DD V ++LE++L+ SD+GV    KI+  +  +R 
Sbjct: 15  LDKGLEKTKQNVFSKLARAVAGKSKVDDEVLDDLEEILVTSDVGVDTTIKIIHRI-EERV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDF---SH-RPHVILVVGVNGVGKTTVIG 129
           A+D  VS   +   +   I  +L   +   N D+    H  P+VILVVGVNGVGKTT IG
Sbjct: 74  ARDKYVSTNELNDILKSEITALLTENNTGSNSDWVLPEHAHPYVILVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KV L A DTFR+AA++Q++IW DR     +  ++G+D A++A++  + A
Sbjct: 134 KLAYQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVIKQQMGADPASVAFDTLQSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +TGQNA  Q 
Sbjct: 194 KANGADVVIIDTAGRLHNKIGLMNELKKIKDVMKKVVPDAPHEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F    F
Sbjct: 254 RQFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFDKAQF 310


>gi|15616653|ref|NP_239865.1| cell division protein FtsY [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386779|sp|P57137|FTSY_BUCAI RecName: Full=Cell division protein ftsY homolog
 gi|25535939|pir||G84932 cell division protein ftsY [imported] - Buchnera sp. (strain APS)
 gi|10038716|dbj|BAB12751.1| cell division protein ftsY [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 378

 Score =  218 bits (556), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 116/282 (41%), Positives = 176/282 (62%), Gaps = 6/282 (2%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L + I  I  S+++D+ + EELE+ ++ +DIG+    +I+  L+     +D+     LY 
Sbjct: 94  LGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLKNSEKLYF 153

Query: 88  VSELIHKMLMPLSK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  L  KM   L K   P     SH P VILVVGVNG GKTT + KL++K    G  +ML
Sbjct: 154 L--LKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSIML 210

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+A I+QL+      +   +    GSD AA+ ++A K A++KK+DVLIIDTAGR
Sbjct: 211 AAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGR 270

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LHN   L+  + K++RV+K++D  APH  L ++D+  GQN ++Q E+FH     TG+I+T
Sbjct: 271 LHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEIFHKALNLTGIIIT 330

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           K+DGTA+GG +  +    +IP+ ++G+GE + DL  F +++F
Sbjct: 331 KLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFNSQEF 372


>gi|34763139|ref|ZP_00144108.1| Cell division protein ftsY [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887202|gb|EAA24304.1| Cell division protein ftsY [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 344

 Score =  218 bits (556), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 133/311 (42%), Positives = 196/311 (63%), Gaps = 14/311 (4%)

Query: 3   NQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           NQKV  S+ L+   K  +GF S   KLK   T   S  ++DD + EELEDLL++SD+G++
Sbjct: 43  NQKVNISQRLT---KSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSDVGLS 93

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVILVVGV 119
           +   ++++L  +  +K V     +Y++   L+ + L+   SK +  D  ++ +VIL+VGV
Sbjct: 94  MTTNLIDQLEKEVKSKKVDNTEEVYEILKRLMSEFLLSQDSKIYLKD--NKINVILIVGV 151

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ K  + G KV+L AGDTFR+AA++QL+ WA R   D V    G+D A
Sbjct: 152 NGVGKTTTIGKLALKYKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADPA 211

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+   +A++ K DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D 
Sbjct: 212 SVVYDTLSRAESTKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIREQEYESLLVIDG 271

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN L Q + F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL 
Sbjct: 272 TTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLI 331

Query: 300 PFVAKDFSAVI 310
            F AKDF   I
Sbjct: 332 EFNAKDFVEAI 342


>gi|241661887|ref|YP_002980247.1| signal recognition particle-docking protein FtsY [Ralstonia
           pickettii 12D]
 gi|240863914|gb|ACS61575.1| signal recognition particle-docking protein FtsY [Ralstonia
           pickettii 12D]
          Length = 398

 Score =  218 bits (555), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 124/301 (41%), Positives = 179/301 (59%), Gaps = 7/301 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W+ +L  G + TS    +G+T +    ++D+ + EELE  L+ +D GV   + ++ EL  
Sbjct: 104 WMSRLRSGLSKTS----KGLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLAELRR 159

Query: 73  KRYAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A+ +     V   + +L+ ++L PL K        +P VI++ GVNG GKTT IGKL
Sbjct: 160 RIKAQRIETSEGVKTALRDLLVELLHPLEKTMVLG-REQPMVIMIAGVNGAGKTTSIGKL 218

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            K     G  V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A   A+A
Sbjct: 219 CKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNAARA 277

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+++ DTAGRL     LM  + K+ RV  +    APH  L V+D  TGQNAL QV+ 
Sbjct: 278 RGIDIVMADTAGRLPTQLHLMEELKKVRRVTAKAMATAPHETLLVIDGNTGQNALAQVKA 337

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++F+  + 
Sbjct: 338 FDEALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALL 397

Query: 312 G 312
           G
Sbjct: 398 G 398


>gi|262037876|ref|ZP_06011306.1| signal recognition particle-docking protein FtsY [Leptotrichia
           goodfellowii F0264]
 gi|261748086|gb|EEY35495.1| signal recognition particle-docking protein FtsY [Leptotrichia
           goodfellowii F0264]
          Length = 354

 Score =  218 bits (555), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 115/273 (42%), Positives = 174/273 (63%), Gaps = 5/273 (1%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97
           + +DD + EELE++LI+SDIG+ +  ++VEEL  +   K +     +YD + E++ +  +
Sbjct: 76  KTIDDDLYEELEEVLIQSDIGMNMTMQLVEELEKRVAKKKLKTSEEVYDELKEILKEKFI 135

Query: 98  P---LSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
               L    + D    + ++ILVVGVNGVGKTT IGK++ K+ + G KV++ AGDTFR+A
Sbjct: 136 SNNTLHDNIDLDLKDGQLNIILVVGVNGVGKTTSIGKIANKLINEGKKVIIGAGDTFRAA 195

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           AI+Q++ W  RT A+ V    GSD +A+ ++    A+ +  DV IIDTAGRLHN   LM 
Sbjct: 196 AIEQIEEWGKRTGAEVVKQSHGSDPSAVIFDTVSTAKNRSFDVAIIDTAGRLHNKRDLMN 255

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ +++++         L V+D TTGQN L Q ++F+ +   +G+I+TK DGTA+GG
Sbjct: 256 ELEKINKIIRQQSGQEKFETLLVIDGTTGQNGLEQAKVFNEIVDLSGIILTKFDGTAKGG 315

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + PI    K P+ F+GVGEGINDL  F  K+F
Sbjct: 316 IIFPISEELKKPIKFIGVGEGINDLRKFNIKEF 348


>gi|17545105|ref|NP_518507.1| cell division protein [Ralstonia solanacearum GMI1000]
 gi|17427396|emb|CAD13914.1| putative cell division protein [Ralstonia solanacearum GMI1000]
          Length = 328

 Score =  218 bits (555), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 124/301 (41%), Positives = 183/301 (60%), Gaps = 7/301 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W+ +L  G + TS    + +T +    ++D+ + EELE  L+ +D GV   + +++EL  
Sbjct: 34  WMSRLRSGLSKTS----KSLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLDELRR 89

Query: 73  KRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A+ + + + V   + +L+ ++L PL K        +P VI++ GVNG GKTT IGKL
Sbjct: 90  RVKAQRIETAEGVKTALRDLLIELLHPLEKTMVLG-RDQPTVIMIAGVNGAGKTTSIGKL 148

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            K     G  V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A   A+A
Sbjct: 149 CKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNAARA 207

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+++ DTAGRL     LM  + K+ RV+ +    APH  L V+DA TGQNAL QV+ 
Sbjct: 208 RGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQNALAQVKA 267

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++F+  + 
Sbjct: 268 FDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALL 327

Query: 312 G 312
           G
Sbjct: 328 G 328


>gi|83746837|ref|ZP_00943884.1| FtsY [Ralstonia solanacearum UW551]
 gi|83726422|gb|EAP73553.1| FtsY [Ralstonia solanacearum UW551]
          Length = 328

 Score =  218 bits (555), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 182/304 (59%), Gaps = 13/304 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           W+ +L  G + TS    + +T +    ++D+ + EELE  L+ +D GV   + +++EL  
Sbjct: 34  WMSRLRSGLSKTS----KSLTTLFVGVKVDETLFEELETALLMADAGVDATEYLLDELRR 89

Query: 72  ---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              T+R     SV+  L D   L+ ++L PL K        +P VI++ GVNG GKTT I
Sbjct: 90  RVKTQRIETAESVKTALRD---LLVELLHPLEKTMVLG-RDQPMVIMIAGVNGAGKTTSI 145

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL K     G  V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A   
Sbjct: 146 GKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNA 204

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +D+++ DTAGRL     LM  + K+ RV+ +    APH  L V+DA TGQNAL Q
Sbjct: 205 ARARGIDIVMADTAGRLPTQMHLMEELKKVRRVIGKAMVTAPHETLLVIDANTGQNALAQ 264

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++F+ 
Sbjct: 265 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFAD 324

Query: 309 VITG 312
            + G
Sbjct: 325 ALLG 328


>gi|268608884|ref|ZP_06142611.1| Signal recognition particle GTPase, FtsY [Ruminococcus flavefaciens
           FD-1]
          Length = 527

 Score =  218 bits (555), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 130/298 (43%), Positives = 188/298 (63%), Gaps = 5/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +  I+K+  G   T   L  GI  I++S   +DD + ++LE+ +I SDIGV  +++I ++
Sbjct: 1   MGIIKKIADGLRKTKDFLFGGIQRILNSFTEIDDELFDQLEEQMIMSDIGVETSEEICDQ 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   + ++  +   ++ ELIH+++  +       D S  P VI+V+GVNG GKTT I
Sbjct: 61  LRKKIKERGITDPQ---EIMELIHEVVSEMMGDDTGLDLSVSPAVIMVIGVNGAGKTTTI 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS +    G KV++AA DTFR+AAIDQL++W DR   D V    GSD  A+ Y+A   
Sbjct: 118 GKLSHQFKQEGKKVLVAAADTFRAAAIDQLQVWTDRAGVDIVKHAEGSDPGAVVYDALDA 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           AQA+  DV+IIDTAGRLHN   LM  + K+ R++ +  P +   VL VLDATTGQNA+ Q
Sbjct: 178 AQARGCDVVIIDTAGRLHNKKNLMDELAKINRIIDKKSPESSREVLLVLDATTGQNAVNQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             +F   A  +G+++TK+DGTA+GG +I I     IPV  +G+GE I DL+PF ++DF
Sbjct: 238 ARLFSETAPISGIVLTKLDGTAKGGIVISIKNELGIPVKLIGIGEKIEDLQPFNSRDF 295


>gi|261879551|ref|ZP_06005978.1| signal recognition particle-docking protein FtsY [Prevotella
           bergensis DSM 17361]
 gi|270333777|gb|EFA44563.1| signal recognition particle-docking protein FtsY [Prevotella
           bergensis DSM 17361]
          Length = 315

 Score =  218 bits (555), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 122/273 (44%), Positives = 173/273 (63%), Gaps = 7/273 (2%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM 97
            +D+ V + LE++LI SD+GV    KI+E +  +R A+D  VS   +   + + I  +L 
Sbjct: 39  EVDEDVLDNLEEVLITSDVGVDTTLKIIERI-EERVARDKYVSTSELNGILKDEIASLLT 97

Query: 98  PLSKPFN--WDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             +   N  W+    H P+VILVVGVNGVGKTT IGKL+ +   AG KV L A DTFR+A
Sbjct: 98  ENNSDDNDNWELPADHSPYVILVVGVNGVGKTTTIGKLAYQFKAAGKKVYLGAADTFRAA 157

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++Q+ IW DR     V  ++G+D A++A++  + A+A   DV++IDTAGRLHN   LM 
Sbjct: 158 AVEQISIWGDRVGVPVVKQQMGADPASVAFDTLQSAKANGADVVLIDTAGRLHNKVGLMN 217

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+  V+K++ P AP  VL VLD +TGQNA  Q   F AV   T L +TK+DGTA+GG
Sbjct: 218 ELKKIKDVMKKVVPSAPDEVLLVLDGSTGQNAFEQARQFSAVTQITSLAITKLDGTAKGG 277

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            +I I    K+PV ++G+GE + DL+ F  K+F
Sbjct: 278 VVIGISDQLKVPVKYIGLGEKMEDLQLFNRKEF 310


>gi|256422107|ref|YP_003122760.1| signal recognition particle-docking protein FtsY [Chitinophaga
           pinensis DSM 2588]
 gi|256037015|gb|ACU60559.1| signal recognition particle-docking protein FtsY [Chitinophaga
           pinensis DSM 2588]
          Length = 320

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/275 (44%), Positives = 174/275 (63%), Gaps = 13/275 (4%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-----VSVQRVLYDVSELIHKM 95
           +D  V + LE+ L+ +D+GV    +I++ +  KR +KD       + ++L    E I  +
Sbjct: 41  VDTEVLDSLEEALVSADVGVDTTVQIIDRI-EKRVSKDKYLGTAELNKIL---QEEIAGL 96

Query: 96  LM--PLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           L+  P S  + F+     +P+VI+VVGVNGVGKTT IGKL+     AG  V+L A DTFR
Sbjct: 97  LVDAPDSGFRDFDVPADKKPYVIMVVGVNGVGKTTTIGKLAYNFKKAGKSVLLGAADTFR 156

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           +AA+DQL IW+DR     V  ++GSD  A+A++  +   AK  +V+IIDTAGRLHN + L
Sbjct: 157 AAAVDQLTIWSDRVGVPIVKQQMGSDPGAVAFDTVQSGAAKGSEVIIIDTAGRLHNKAHL 216

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + K+ RV+K++ P APH VL VLD +TGQNAL Q   F A    T L +TK+DGTA+
Sbjct: 217 MDELSKIKRVMKKVIPDAPHEVLLVLDGSTGQNALEQARHFTAATEVTALAITKLDGTAK 276

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GG ++ I    KIPV ++G+GE + DL+ F  ++F
Sbjct: 277 GGVVLAIANQFKIPVKYIGIGEKMEDLQVFSKEEF 311


>gi|160889556|ref|ZP_02070559.1| hypothetical protein BACUNI_01980 [Bacteroides uniformis ATCC 8492]
 gi|270296680|ref|ZP_06202879.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           D20]
 gi|317480048|ref|ZP_07939160.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           4_1_36]
 gi|156861073|gb|EDO54504.1| hypothetical protein BACUNI_01980 [Bacteroides uniformis ATCC 8492]
 gi|270272667|gb|EFA18530.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           D20]
 gi|316903790|gb|EFV25632.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           4_1_36]
          Length = 319

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/296 (40%), Positives = 179/296 (60%), Gaps = 6/296 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV    KI+E +  +  
Sbjct: 15  LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIERIEKRAA 74

Query: 74  --RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +Y     +  +L D ++ L+ +        F    + +P+VI+VVGVNGVGKTT IGK
Sbjct: 75  ADKYMNATELNHILRDEIAALLTENNSEDVDDFEAPIAKKPYVIMVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A++A++    A 
Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVVKQKMGADPASVAFDTLSSAT 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +TGQNA  Q +
Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F  K+F
Sbjct: 255 QFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310


>gi|94676923|ref|YP_588534.1| signal recognition particle-docking protein FtsY [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94220073|gb|ABF14232.1| signal recognition particle-docking protein FtsY [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 354

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 185/301 (61%), Gaps = 6/301 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W+ KL +   +TS     G+  + SS ++D+ + +++E  L+ +D+G    +KI++ L+T
Sbjct: 54  WLSKLKRSLVNTSHHFSSGLMRLFSSTKIDNHLFDQIETQLLMADVGFETTKKILDSLIT 113

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLS---KPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                 +     LY  S+L   M   LS   KP   + + +P +IL+VGVNG GKTT IG
Sbjct: 114 YVDHNKIKNTDALY--SKLRADMTAILSLVNKPLVIE-NKKPFIILMVGVNGAGKTTTIG 170

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++ +       VMLAAGDTFR+AA++QL+ W +  +   V    G+D+A++ +++ + A
Sbjct: 171 KIAHQYQVEKKSVMLAAGDTFRAAAVEQLQAWGELNNIPVVAQHTGADSASVIFDSIQSA 230

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DT+GRL NN  LM  + K++RV+K++D  APH V+  +DA TGQNA++Q 
Sbjct: 231 KARGIDVLIADTSGRLQNNVSLMEELKKIVRVMKKIDIEAPHEVMLTIDAGTGQNAVQQA 290

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F+     TG+ +TK+DGTA+GG +  I    KIP+ ++ +GE I+DL  F +  F   
Sbjct: 291 LLFNKTIKITGITLTKLDGTAKGGVIFAIADQFKIPIRYISIGERISDLRAFNSNIFVEA 350

Query: 310 I 310
           I
Sbjct: 351 I 351


>gi|297181002|gb|ADI17203.1| hypothetical protein [uncultured delta proteobacterium
           HF0070_10I02]
          Length = 345

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/289 (43%), Positives = 172/289 (59%), Gaps = 7/289 (2%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           G   T   L  G+    +S   +D   E LE+ LI +D+GV  A  IVE +  K    D 
Sbjct: 48  GLGRTRTALASGLGHFFNSDANEDKRFEALEEALIGADVGVKTAMNIVEAV--KAECADP 105

Query: 80  SVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +   VL      +L+ ++    S     D    P VILVVGVNG GKTT IGKL+ + ++
Sbjct: 106 ADPEVLRAALKKQLLSRLTAETSIAVRED---GPLVILVVGVNGSGKTTTIGKLAHQYTE 162

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            G KV+LAAGDTFR+ AI+QL++W +R +   +  + G+D AA+ Y+  +   A+K+DV+
Sbjct: 163 QGKKVLLAAGDTFRAGAIEQLQVWGERVNIPVIAHQEGADPAAVIYDGIQAGIARKMDVV 222

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           I DTAGRL   S LM  + K+ RV+ +  P APH VL VLDAT GQNAL Q + F  + G
Sbjct: 223 ICDTAGRLQAQSQLMDELAKVARVMNKALPGAPHEVLLVLDATIGQNALSQAKAFKDLVG 282

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            TG+ +TK+DGTARGG ++ +     IPV  +G+GEGI DL PF A  F
Sbjct: 283 VTGVALTKLDGTARGGVVVAVQAEMGIPVKLVGLGEGIGDLRPFSATPF 331


>gi|207727827|ref|YP_002256221.1| cell division protein [Ralstonia solanacearum MolK2]
 gi|206591068|emb|CAQ56680.1| cell division protein [Ralstonia solanacearum MolK2]
          Length = 381

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 182/304 (59%), Gaps = 13/304 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           W+ +L  G + TS    + +T +    ++D+ + EELE  L+ +D GV   + +++EL  
Sbjct: 87  WMSRLRSGLSKTS----KSLTTLFVGVKVDETLFEELETALLMADAGVDATEYLLDELRR 142

Query: 72  ---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              T+R     SV+  L D   L+ ++L PL K        +P VI++ GVNG GKTT I
Sbjct: 143 RVKTQRIETAESVKTALRD---LLVELLHPLEKTMVLG-RDQPMVIMIAGVNGAGKTTSI 198

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL K     G  V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A   
Sbjct: 199 GKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNA 257

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +D+++ DTAGRL     LM  + K+ RV+ +    APH  L V+DA TGQNAL Q
Sbjct: 258 ARARGIDIVMADTAGRLPTQMHLMEELKKVRRVIGKAMVTAPHETLLVIDANTGQNALAQ 317

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++F+ 
Sbjct: 318 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFAD 377

Query: 309 VITG 312
            + G
Sbjct: 378 ALLG 381


>gi|189461330|ref|ZP_03010115.1| hypothetical protein BACCOP_01980 [Bacteroides coprocola DSM 17136]
 gi|189431859|gb|EDV00844.1| hypothetical protein BACCOP_01980 [Bacteroides coprocola DSM 17136]
          Length = 320

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/297 (41%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV    KI++ +  KR 
Sbjct: 15  LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIKRI-EKRV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A+D  V+ Q +   + E I  +L       S+ F      +P+VI+VVGVNGVGKTT IG
Sbjct: 74  AQDKYVNTQELNNILREEIAALLTENNTVDSEEFTVPEGKKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++GSD A++A++    A
Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVIKQKMGSDPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V++++ P APH +L VLD +TGQNA  Q 
Sbjct: 194 VANNADVVIIDTAGRLHNKIGLMNELTKIKNVMQKVVPDAPHEILLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F        + +TK+DGTA+GG +I I    KIPV ++G+GEGI DL+ F  ++F
Sbjct: 254 KQFTLATEVNAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIEDLQIFRRREF 310


>gi|312797361|ref|YP_004030283.1| cell division protein ftsY [Burkholderia rhizoxinica HKI 454]
 gi|312169136|emb|CBW76139.1| Cell division protein ftsY [Burkholderia rhizoxinica HKI 454]
          Length = 553

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/302 (42%), Positives = 180/302 (59%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L  G   TS  L    T I    ++D+ + EELE  L+ +D GV     +++ L 
Sbjct: 258 SWLSRLKSGLTKTSSSL----TGIFIGVKVDEALFEELETALLMADAGVDATTYLLDALR 313

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K R  +    Q+V   +  L+ ++L PL +      +  P V+++ GVNG GKTT IGK
Sbjct: 314 QKVRSERLTDAQQVKAALRTLLIELLRPLEQSMVLGRAQ-PLVMMIAGVNGAGKTTSIGK 372

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      VMLAAGDTFR+AA +QL IW  R +   +  E G D AA+ ++A   A+
Sbjct: 373 LAKHLQSFNQSVMLAAGDTFRAAAREQLVIWGQRNNVAVIQQESG-DPAAVIFDAVGAAR 431

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DVL+ DTAGRL     LM  + K+ RV+ +    APH +L VLDA TGQNAL QV+
Sbjct: 432 ARGIDVLMADTAGRLPTQLHLMEELRKVKRVIGKAMDGAPHEILLVLDANTGQNALAQVK 491

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+I+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PFVA +F+  +
Sbjct: 492 AFDEALGLTGIIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFVAAEFADAL 551

Query: 311 TG 312
            G
Sbjct: 552 LG 553


>gi|187927348|ref|YP_001897835.1| signal recognition particle-docking protein FtsY [Ralstonia
           pickettii 12J]
 gi|309779951|ref|ZP_07674705.1| signal recognition particle-docking protein FtsY [Ralstonia sp.
           5_7_47FAA]
 gi|187724238|gb|ACD25403.1| signal recognition particle-docking protein FtsY [Ralstonia
           pickettii 12J]
 gi|308921310|gb|EFP66953.1| signal recognition particle-docking protein FtsY [Ralstonia sp.
           5_7_47FAA]
          Length = 394

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/301 (41%), Positives = 181/301 (60%), Gaps = 7/301 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W+ +L  G + TS    +G+T +    ++D+ + EELE  L+ +D GV   + ++ EL  
Sbjct: 100 WMSRLRSGLSKTS----KGLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLGELRR 155

Query: 73  KRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A+ + + + V   + +L+ ++L PL K        +P VI++ GVNG GKTT IGKL
Sbjct: 156 RIKAQRIETAEGVKTALRDLLVELLHPLEKTMVLG-REQPMVIMIAGVNGAGKTTSIGKL 214

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            K     G  V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A   A+A
Sbjct: 215 CKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNAARA 273

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+++ DTAGRL     LM  + K+ RV  +    APH  L V+D  TGQNAL QV+ 
Sbjct: 274 RGIDIVMADTAGRLPTQLHLMEELKKVRRVTAKAMATAPHETLLVIDGNTGQNALAQVKA 333

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++F+  + 
Sbjct: 334 FDEALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALL 393

Query: 312 G 312
           G
Sbjct: 394 G 394


>gi|94309226|ref|YP_582436.1| signal recognition particle-docking protein FtsY [Cupriavidus
           metallidurans CH34]
 gi|93353078|gb|ABF07167.1| probable cell division protein; signal recognition particle
           receptor FtsY [Cupriavidus metallidurans CH34]
          Length = 340

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/310 (40%), Positives = 181/310 (58%), Gaps = 9/310 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + A     W+ +L  G + TS      I  +    ++D+ + EELE  L+ +D GV   +
Sbjct: 38  QTAEAKRGWMSRLRAGLSKTS----RNIGVLFVGVKVDEALFEELETALLMADAGVEATE 93

Query: 65  KIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            ++ EL  +R   D   + + V   + +L+ ++L PL K        +P V+++ GVNG 
Sbjct: 94  YLLGEL-RRRIKNDRIETAEGVKAALKDLLTQLLKPLEKTMELG-REQPLVMMIAGVNGA 151

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL K        V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ 
Sbjct: 152 GKTTSIGKLCKHFQSYHQSVLLAAGDTFRAAAREQLTIWGERNNVTVVAQESG-DPAAVI 210

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A   A+A+K+D+++ DTAGRL     LM  + K+ RV+ +  P APH VL V+DA TG
Sbjct: 211 FDAVNAARARKIDIVMADTAGRLPTQLHLMEELKKVKRVIGKSMPTAPHEVLLVIDANTG 270

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q   F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF 
Sbjct: 271 QNALAQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFK 330

Query: 303 AKDFSAVITG 312
           A +F+  + G
Sbjct: 331 ADEFAEALLG 340


>gi|52785575|ref|YP_091404.1| hypothetical protein BLi01816 [Bacillus licheniformis ATCC 14580]
 gi|163119430|ref|YP_078989.2| signal recognition particle (docking protein) [Bacillus
           licheniformis ATCC 14580]
 gi|319646023|ref|ZP_08000253.1| FtsY protein [Bacillus sp. BT1B_CT2]
 gi|52348077|gb|AAU40711.1| FtsY [Bacillus licheniformis ATCC 14580]
 gi|145902937|gb|AAU23351.2| signal recognition particle (docking protein) [Bacillus
           licheniformis ATCC 14580]
 gi|317391773|gb|EFV72570.1| FtsY protein [Bacillus sp. BT1B_CT2]
          Length = 328

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/310 (40%), Positives = 197/310 (63%), Gaps = 10/310 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+  ++ S   K  +G A T    +E + +++S  R++D+   EELE++LI +D+GVA 
Sbjct: 9   EKITQQTDSVSGKFKEGLAKTRNTFQERVNELVSRYRKVDEDFFEELEEVLIGADVGVAT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILV 116
             ++++EL ++   +++   +   +V  +I + L+ + +    + S       R ++IL 
Sbjct: 69  VMELIDELKSEVKRRNIQDPK---EVQSVISEKLVEIYEGGEQEASELRVEDGRLNIILF 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ +    G  V+LAAGDTFR+ AIDQL++W +R  A  V    GS
Sbjct: 126 VGVNGVGKTTTIGKLAHQFIKEGKNVVLAAGDTFRAGAIDQLEVWGERVGAHVVKQAEGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A + A+A+  DVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V
Sbjct: 186 DPAAVIYDAVQAAKARGADVLLCDTAGRLQNKVNLMKELEKVKRVIQREVPDAPHEVLLV 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q   F      +G+++TK+DGTA+GG ++ I    +IPV F+G+GE ++
Sbjct: 246 LDATTGQNAMTQAREFSKATDVSGIVLTKLDGTAKGGIVLAIRHELQIPVKFVGLGEKMD 305

Query: 297 DLEPFVAKDF 306
           DL+PF A+ +
Sbjct: 306 DLQPFEAESY 315


>gi|91215248|ref|ZP_01252220.1| signal recognition particle-docking protein FtsY [Psychroflexus
           torquis ATCC 700755]
 gi|91186853|gb|EAS73224.1| signal recognition particle-docking protein FtsY [Psychroflexus
           torquis ATCC 700755]
          Length = 319

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 119/276 (43%), Positives = 176/276 (63%), Gaps = 13/276 (4%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYD-----VSE 90
           ++D+ V ++LE++L+ SD+G+    KI+  +  +    +Y     +  +L +     +SE
Sbjct: 40  KVDESVLDDLEEILVSSDVGITTTIKIINRIEARVAKNKYLGTDELNLILREEIAGLLSE 99

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
             +  L  L  P     S +P+VI+VVGVNGVGKTT IGKL+K     G KV+L AGDTF
Sbjct: 100 SENGELESLELPE----SKKPYVIMVVGVNGVGKTTTIGKLAKHYKLKGKKVVLGAGDTF 155

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA++QL+IWADR     V  ++GSD A++A++  + A  +  D++I+DTAGRLHN   
Sbjct: 156 RAAAVEQLQIWADRVGVPIVKQKMGSDPASVAFDTVQSAIKQNADIVILDTAGRLHNKVN 215

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + K+ RV++++ P+ P  VL VLD +TGQNA  Q + F A    T L +TK+DGTA
Sbjct: 216 LMNELIKIKRVMQKVIPNIPDEVLLVLDGSTGQNAFEQAKQFTAATQVTALAITKLDGTA 275

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +GG +I I    KIPV ++GVGEGI+DL+ F   +F
Sbjct: 276 KGGVVIGISDQFKIPVKYIGVGEGIDDLQIFNKYEF 311


>gi|207742231|ref|YP_002258623.1| cell division protein [Ralstonia solanacearum IPO1609]
 gi|206593619|emb|CAQ60546.1| cell division protein [Ralstonia solanacearum IPO1609]
          Length = 377

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 182/304 (59%), Gaps = 13/304 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           W+ +L  G + TS    + +T +    ++D+ + EELE  L+ +D GV   + +++EL  
Sbjct: 83  WMSRLRSGLSKTS----KSLTTLFVGVKVDETLFEELETALLMADAGVDATEYLLDELRR 138

Query: 72  ---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              T+R     SV+  L D   L+ ++L PL K        +P VI++ GVNG GKTT I
Sbjct: 139 RVKTQRIETAESVKTALRD---LLVELLHPLEKTMVLG-RDQPMVIMIAGVNGAGKTTSI 194

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL K     G  V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A   
Sbjct: 195 GKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNA 253

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +D+++ DTAGRL     LM  + K+ RV+ +    APH  L V+DA TGQNAL Q
Sbjct: 254 ARARGIDIVMADTAGRLPTQMHLMEELKKVRRVIGKAMVTAPHETLLVIDANTGQNALAQ 313

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++F+ 
Sbjct: 314 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFAD 373

Query: 309 VITG 312
            + G
Sbjct: 374 ALLG 377


>gi|300705260|ref|YP_003746863.1| signal recognition particle (srp) GTPase [Ralstonia solanacearum
           CFBP2957]
 gi|299072924|emb|CBJ44280.1| Signal recognition particle (SRP) GTPase [Ralstonia solanacearum
           CFBP2957]
          Length = 387

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/301 (41%), Positives = 182/301 (60%), Gaps = 7/301 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W+ +L  G + TS    + +T +    ++D+ + EELE  L+ +D GV   + ++ EL  
Sbjct: 93  WMSRLRSGLSKTS----KSLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLNELRR 148

Query: 73  KRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A+ + + + V   + +L+ ++L PL K        +P VI++ GVNG GKTT IGKL
Sbjct: 149 RVKAQRIETAESVKTALRDLLIELLHPLEKTMVLG-RDQPMVIMIAGVNGAGKTTSIGKL 207

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            K     G  V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A   A+A
Sbjct: 208 CKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNAARA 266

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+++ DTAGRL     LM  + K+ RV+ +    APH  L V+DA TGQNAL QV+ 
Sbjct: 267 RGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMVTAPHETLLVIDANTGQNALAQVKA 326

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++F+  + 
Sbjct: 327 FDDTLGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALL 386

Query: 312 G 312
           G
Sbjct: 387 G 387


>gi|256750715|ref|ZP_05491600.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750298|gb|EEU63317.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 284

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 115/262 (43%), Positives = 169/262 (64%), Gaps = 16/262 (6%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFS 108
           +DIG++   KI+E +  K      + +R +YD S++       ++++L    +PF     
Sbjct: 30  ADIGISTTSKIIEGIRQK------AKERKIYDASQIKELLAEEVYEILQKDVEPFTL--- 80

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P VIL VGVNGVGKTT IGKL+      G KVMLAAGDTFR+AAIDQL+IWA+R +  
Sbjct: 81  TSPMVILNVGVNGVGKTTTIGKLAYLYKKEGKKVMLAAGDTFRAAAIDQLEIWAERVNCP 140

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +  + GSD A++ ++  + ++A+ +D+LI DTAGRLHN   LM  + K+ +V+ R  P 
Sbjct: 141 IIKHQEGSDPASVIFDGIQASKARGIDILICDTAGRLHNKKNLMEELRKIRKVIDREYPE 200

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           A      VLDATTGQNAL+Q ++F  V+  TG+++TK+DGTA+GG ++ I     +P+ +
Sbjct: 201 ARVETFLVLDATTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRY 260

Query: 289 LGVGEGINDLEPFVAKDFSAVI 310
           +G+GEGI DL+ F AK F + I
Sbjct: 261 IGIGEGIEDLQAFDAKSFVSAI 282


>gi|218131134|ref|ZP_03459938.1| hypothetical protein BACEGG_02739 [Bacteroides eggerthii DSM 20697]
 gi|217986654|gb|EEC52988.1| hypothetical protein BACEGG_02739 [Bacteroides eggerthii DSM 20697]
          Length = 319

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 179/296 (60%), Gaps = 6/296 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV    KI+E +  +  
Sbjct: 15  LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIERIEKRAA 74

Query: 74  --RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +Y     +  +L D ++ L+ +        F    + +P+VI+VVGVNGVGKTT IGK
Sbjct: 75  DEKYMNAQELNMILRDEIAALLTENNSDDVDDFETPITKKPYVIMVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG  V L A DTFR+AA++QL IW +R     V  ++GSD A++A++    A 
Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVVKQKMGSDPASVAFDTLSSAV 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +TGQNA  Q +
Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F  K+F
Sbjct: 255 QFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310


>gi|163790807|ref|ZP_02185232.1| signal recognition particle-docking protein FtsY [Carnobacterium
           sp. AT7]
 gi|159873875|gb|EDP67954.1| signal recognition particle-docking protein FtsY [Carnobacterium
           sp. AT7]
          Length = 332

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 183/308 (59%), Gaps = 16/308 (5%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E+     K  KG   T     + + ++ ++ R +D+   +ELE++LI +D+G     +I 
Sbjct: 18  ETTEVTEKYEKGLEKTRKTFSQRMNELFANFRTVDEDFFDELEEVLIGADVGFESTMEIT 77

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---------VILVVG 118
           + L  +   K+        +V ++I + ++ + +  N D   +P          VIL+VG
Sbjct: 78  DALRQEVKLKNAKASN---EVQQVIIEKMVEIYEKGNTD---KPEININPAGLTVILLVG 131

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++      G KVMLAAGDTFR+ AI+QL +W DR  A+ V  + G D 
Sbjct: 132 VNGVGKTTTIGKMAHLYQQEGKKVMLAAGDTFRAGAIEQLHVWGDRVGAEVVSGKAGGDP 191

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A K+A+ K+ D+L +DTAGRL N   LM  + KM R+++R  P  PH VL VLD
Sbjct: 192 AAVVFDAIKEAKQKEADILFVDTAGRLQNKVNLMNELEKMKRIIEREIPGGPHEVLLVLD 251

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL
Sbjct: 252 ATTGQNAMNQAKQFKQTTDVTGIVLTKLDGTAKGGIVLAIRKELDIPVKFVGLGESMDDL 311

Query: 299 EPFVAKDF 306
           + F   ++
Sbjct: 312 QVFDPNEY 319


>gi|301163426|emb|CBW22977.1| putative recognition particle-docking protein [Bacteroides fragilis
           638R]
          Length = 319

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/297 (41%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  KR 
Sbjct: 15  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIG 129
           A+D  V+ Q +   + E I  +L   +     DF      +P+VI+VVGVNGVGKTT IG
Sbjct: 74  AEDKYVNTQELNSILREEIAALLTENNSDDVADFDVPVEKKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++G+D A++A++    A
Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVDVPVIKQKMGADPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +TGQNA  Q 
Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F  K+F
Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVIIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310


>gi|224540007|ref|ZP_03680546.1| hypothetical protein BACCELL_04919 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518374|gb|EEF87479.1| hypothetical protein BACCELL_04919 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 319

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/296 (40%), Positives = 179/296 (60%), Gaps = 6/296 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVA----VAQKIVEELL 71
           L KG + T   +   I  +++ + ++DD V + LE++LI SD+GV     + Q+I +   
Sbjct: 15  LDKGLSKTKESVFGKIARVVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIQRIEKRAA 74

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           +++Y     +  +L D ++ L+ +        F      +P+VI+VVGVNGVGKTT IGK
Sbjct: 75  SEKYMNAQELNTILRDEIAALLTENNSDDVDDFEAPIEKKPYVIMVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG  V L A DTFR+AA++QL IW  R     +  ++G+D A++AY+    A 
Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLDIWGSRVGVPVIKQKMGADPASVAYDTLNSAV 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +TGQNA  Q +
Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F  K+F
Sbjct: 255 QFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310


>gi|297569034|ref|YP_003690378.1| signal recognition particle-docking protein FtsY [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924949|gb|ADH85759.1| signal recognition particle-docking protein FtsY [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 397

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 187/306 (61%), Gaps = 21/306 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE--- 68
           +  +L +G + T   L   + ++   ++ +D  + +ELE++LI +D+G A   +++E   
Sbjct: 71  FFNRLRQGLSRTRENLVSRMDELFLGKKVIDAELFDELEEILITADLGTATTHELLERAR 130

Query: 69  -----ELLTKRYAKDVSVQRVLYDV---SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
                + L+   A +  +Q++L D    ++   +++MP S PF         VI+V+GVN
Sbjct: 131 EQVKRDQLSDPKALEGILQQLLQDYLVQADRPAELVMPASGPF---------VIMVLGVN 181

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ K   AG +V+L A DTFR+AAI+QL+ W  R  A+ +  + G+D ++
Sbjct: 182 GVGKTTTIGKLAYKFKQAGQQVLLVAADTFRAAAIEQLQAWGQRVDAEVIAQQQGADPSS 241

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+AF  A+ +  DV+I+DTAGRLH    LM  + K+ RV+ +  P APH V+ V+DAT
Sbjct: 242 VIYDAFDYARPRNFDVIIVDTAGRLHTKVNLMEELRKIKRVMNQKIPGAPHEVMLVIDAT 301

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN + Q  +FH     +G+ +TK+DGT+RGG ++ I    KIP+ F+G+GE + DL  
Sbjct: 302 TGQNGISQARLFHEAVEVSGIALTKLDGTSRGGIVVNICREFKIPIRFVGIGEQMEDLRD 361

Query: 301 FVAKDF 306
           F  ++F
Sbjct: 362 FEPREF 367


>gi|224024936|ref|ZP_03643302.1| hypothetical protein BACCOPRO_01667 [Bacteroides coprophilus DSM
           18228]
 gi|224018172|gb|EEF76170.1| hypothetical protein BACCOPRO_01667 [Bacteroides coprophilus DSM
           18228]
          Length = 321

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/297 (41%), Positives = 182/297 (61%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +   R 
Sbjct: 15  LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EARV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129
           A+D  V+ Q +   + E I  +L   +   + DFS     +P+VI+VVGVNGVGKTT IG
Sbjct: 74  ARDKYVNTQELNNILREEIAALLTENNTVDSEDFSVPEDKKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A++A++    A
Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVVKQKMGADPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A + DV+IIDTAGRLHN   LM  + K+  V++++ P APH VL VLD +TGQNA  Q 
Sbjct: 194 VANQADVVIIDTAGRLHNKIGLMNELTKIKNVMRKVVPDAPHEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F        + +TK+DGTA+GG +I I    KIPV ++G+GEGI DL+ F  ++F
Sbjct: 254 KQFTLATEVNAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIEDLQVFRRREF 310


>gi|315648179|ref|ZP_07901280.1| signal recognition particle-docking protein FtsY [Paenibacillus
           vortex V453]
 gi|315276825|gb|EFU40168.1| signal recognition particle-docking protein FtsY [Paenibacillus
           vortex V453]
          Length = 333

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 196/311 (63%), Gaps = 14/311 (4%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAV 62
           + ++S++ +  ++   G   T     E ++D +I  +++D+   EELE++LI +D+GV  
Sbjct: 9   ESISSKTENVTKQFRDGLEKTRKGFIEKVSDLVIRRKKIDEEFYEELEEILIGADVGVNT 68

Query: 63  AQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPH---VIL 115
              ++++L   + KR  +D +      D+  ++ + LM L +   + +    P    VIL
Sbjct: 69  VMDLMDDLRAEVKKRRIEDAA------DLQPVLSEKLMGLLRDDSSNELRENPDGITVIL 122

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI+QL++W +R   + +  + G
Sbjct: 123 FVGVNGVGKTTTIGKLAHRYKQEGKKVMLAAGDTFRAGAIEQLEVWGERVGVEVIKQQPG 182

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ ++A + A+ ++ D+LI DTAGRL N + LM  + K+ RV++R  P APH VL 
Sbjct: 183 SDPAAVMFDAVQAAKQRQADILICDTAGRLQNKTNLMEELNKIFRVIQREIPSAPHEVLM 242

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNAL Q ++F   +G TGL++TK+DGTA+GG +I I     +PV  +G+GE +
Sbjct: 243 VLDATTGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRQELNLPVKLVGLGEKM 302

Query: 296 NDLEPFVAKDF 306
            DL+ F ++ F
Sbjct: 303 GDLQTFDSEQF 313


>gi|323489556|ref|ZP_08094783.1| cell division protein ftsY-like protein [Planococcus donghaensis
           MPA1U2]
 gi|323396687|gb|EGA89506.1| cell division protein ftsY-like protein [Planococcus donghaensis
           MPA1U2]
          Length = 338

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/305 (42%), Positives = 192/305 (62%), Gaps = 9/305 (2%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
           +E+     K  +G A T +     I D+++  R++D+   EELE++L+++D+G     ++
Sbjct: 15  AEAEESTEKYKEGLAKTRIGFTSKINDLVAKYRKVDEDFFEELEEILLQADVGFETVIEL 74

Query: 67  VEEL---LTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNG 121
           +++L   + ++  KD S VQ V   +SE + ++        N  +F     VIL+VGVNG
Sbjct: 75  MDDLRFEVQRKNVKDTSNVQSV---ISEKLVEIYEAGEAEINEINFVEGLTVILMVGVNG 131

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ +  + G  VMLAAGDTFR+ AI+QL +W  R   D +    GSD AA+
Sbjct: 132 VGKTTTIGKLAHRFKNEGKTVMLAAGDTFRAGAIEQLDVWGKRVGVDVIKQSEGSDPAAV 191

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A + A+++ VDVLI DTAGRL N   LM  + K+ RV+ R  P APH VL  LDATT
Sbjct: 192 MYDAVRSAKSRGVDVLICDTAGRLQNKVNLMNELQKVHRVISREIPGAPHEVLLALDATT 251

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F  V   TG+++TK+DGTA+GG ++ I    KIPV F+G+GE ++DL+PF
Sbjct: 252 GQNAMLQAQTFKEVTDVTGIVLTKLDGTAKGGIVLAIRNKLKIPVKFVGLGEKMDDLQPF 311

Query: 302 VAKDF 306
            A+ +
Sbjct: 312 DAQKY 316


>gi|313203647|ref|YP_004042304.1| signal recognition particle-docking protein ftsy [Paludibacter
           propionicigenes WB4]
 gi|312442963|gb|ADQ79319.1| signal recognition particle-docking protein FtsY [Paludibacter
           propionicigenes WB4]
          Length = 316

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/292 (41%), Positives = 180/292 (61%), Gaps = 8/292 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L +G + T   +   +T  ++ + ++DD V + LE++LI SD+GV    +I+E +  KR 
Sbjct: 15  LDQGLSKTKESVFSKLTRAVAGKSKVDDEVLDNLEEVLITSDVGVETTLRIIERI-EKRV 73

Query: 76  AKDVSVQR------VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A+D  V        +  +++ L+ +        F+ +    P+VI+VVGVNGVGKTT IG
Sbjct: 74  AQDKYVNTSELNGILKQEIAGLLAENNSDTPIDFDAELPTTPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ + + AG KV L A DTFR+AA+DQL IW +R     +  ++G+D A++AY+    A
Sbjct: 134 KLAHQFTKAGKKVYLGAADTFRAAAVDQLVIWGERAGVPVIKQKMGADPASVAYDTIASA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV+IIDTAGRLHN   LM  + K+  V++++ P AP+ VL VLD +TGQNA  Q 
Sbjct: 194 KANNADVVIIDTAGRLHNKINLMNELTKIKNVMQKVVPSAPNEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           + F      T L +TK+DGTA+GG +I I    KIPV ++G+GEG+  L+ F
Sbjct: 254 KQFTKATDVTALAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEHLQVF 305


>gi|163782277|ref|ZP_02177275.1| cell division protein FtsY [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882310|gb|EDP75816.1| cell division protein FtsY [Hydrogenivirga sp. 128-5-R1-1]
          Length = 460

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 188/302 (62%), Gaps = 3/302 (0%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V  +  S + KL KG   T   ++ GI  +   R++DD + EELE+LL+++D+GV  A  
Sbjct: 155 VEEKKESLLDKLKKGLRKTKESVEFGI--VFRGRKVDDELFEELEELLVKADVGVKTAVN 212

Query: 66  IVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +VE+L      K++     L +++ E + ++L       N     +P V+L +GVNG GK
Sbjct: 213 LVEDLRKTAIRKNIKSSEELKEITKEKVKELLRGCEGKLNLPTEKKPVVVLFLGVNGSGK 272

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ + +  G +V+L A DTFR+AAI+QL++WA R+ AD      G+D A++ YE
Sbjct: 273 TTTIGKLAHRFTKEGKRVLLVAADTFRAAAIEQLEVWAQRSGADITKKHEGADPASVVYE 332

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A  +  DV++IDTAGRLH    L+  + K+ +V+++L P  P   L VLDAT GQN
Sbjct: 333 GVDRAIREGHDVVLIDTAGRLHTKEPLIQELRKVKKVIQKLAPEEPSETLLVLDATIGQN 392

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           +++Q ++F      +G+++TK+DG+A+GG +I I    KIP+  +GVGEGI+DL+PF   
Sbjct: 393 SIQQAKVFKEAVDISGIVVTKLDGSAKGGAVIAICRELKIPIKLIGVGEGIDDLQPFSVD 452

Query: 305 DF 306
           ++
Sbjct: 453 EY 454


>gi|325297731|ref|YP_004257648.1| signal recognition particle-docking protein FtsY [Bacteroides
           salanitronis DSM 18170]
 gi|324317284|gb|ADY35175.1| signal recognition particle-docking protein FtsY [Bacteroides
           salanitronis DSM 18170]
          Length = 320

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/306 (40%), Positives = 183/306 (59%), Gaps = 8/306 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   I+ + ++DD V + LE++LI SD+GV    KI++ +  KR 
Sbjct: 15  LDKGLSKTKESVFGKIARAIAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIKRI-EKRV 73

Query: 76  AKDVSVQR------VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A+D  V        +  +++ L+ +     ++ FN      P+VI+VVGVNGVGKTT IG
Sbjct: 74  AQDKYVNTDELNGILREEIAALLTENNTVDAESFNIPEGKAPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++GSD A++A++    A
Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVIKQKMGSDPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V++++ P APH VL VLD +TGQNA  Q 
Sbjct: 194 VANHADVVIIDTAGRLHNKIGLMNELTKIKNVMQKVVPDAPHEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F        + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F  ++F   
Sbjct: 254 KQFTLATEVNAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQIFRRREFVDS 313

Query: 310 ITGCLD 315
           + G  D
Sbjct: 314 LFGTTD 319


>gi|53713717|ref|YP_099709.1| recognition particle-docking protein FtsY [Bacteroides fragilis
           YCH46]
 gi|60681988|ref|YP_212132.1| putative recognition particle-docking protein [Bacteroides fragilis
           NCTC 9343]
 gi|253565665|ref|ZP_04843120.1| recognition particle-docking protein FtsY [Bacteroides sp. 3_2_5]
 gi|265764041|ref|ZP_06092609.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           2_1_16]
 gi|52216582|dbj|BAD49175.1| recognition particle-docking protein FtsY [Bacteroides fragilis
           YCH46]
 gi|60493422|emb|CAH08208.1| putative recognition particle-docking protein [Bacteroides fragilis
           NCTC 9343]
 gi|251945944|gb|EES86351.1| recognition particle-docking protein FtsY [Bacteroides sp. 3_2_5]
 gi|263256649|gb|EEZ27995.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           2_1_16]
          Length = 319

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/297 (41%), Positives = 181/297 (60%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  KR 
Sbjct: 15  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIG 129
           A+D  V+ Q +   + E I  +L   +     DF      +P+VI+VVGVNGVGKTT IG
Sbjct: 74  AEDKYVNTQELNSILREEIAALLTENNSDDVADFDVPVEKKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++G+D A++A++    A
Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVDVPVIKQKMGADPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +TGQNA  Q 
Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F  K+F
Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310


>gi|237742006|ref|ZP_04572487.1| signal recognition particle receptor FtsY [Fusobacterium sp.
           4_1_13]
 gi|229429654|gb|EEO39866.1| signal recognition particle receptor FtsY [Fusobacterium sp.
           4_1_13]
          Length = 344

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/316 (42%), Positives = 195/316 (61%), Gaps = 24/316 (7%)

Query: 3   NQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           NQKV  S+ L+   K  +GF S   KLK   T   S  ++DD + EELEDLL++SD+G+ 
Sbjct: 43  NQKVNISQRLT---KSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSDVGLT 93

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--NWDF-----SHRPHVI 114
           +   ++ +L      K+V   +V  D +E ++++L  L   F  + D      +++ +VI
Sbjct: 94  MTTNLINQL-----EKEVKANKV--DNTEKVYEILKRLMSEFLLSQDSKIYLKNNKINVI 146

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNGVGKTT IGKL+ K  + G KV+L AGDTFR+AA++QL+ WA R   D V    
Sbjct: 147 LIVGVNGVGKTTTIGKLALKYKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGRE 206

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D A++ Y+   +A++ K DV+IIDTAGRLHN + LM  + K+  ++K+      +  L
Sbjct: 207 GADPASVVYDTLSKAESTKADVVIIDTAGRLHNKTNLMRELEKINNIIKKKIGEQEYESL 266

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+D TTGQN L Q + F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE 
Sbjct: 267 LVIDGTTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEK 326

Query: 295 INDLEPFVAKDFSAVI 310
           I DL  F AKDF   I
Sbjct: 327 IGDLIEFNAKDFVEAI 342


>gi|148284178|ref|YP_001248268.1| cell division ABC transporter, periplasmic substrate-binding
           protein [Orientia tsutsugamushi str. Boryong]
 gi|146739617|emb|CAM79402.1| cell division ABC transporter, periplasmic substrate-binding
           protein [Orientia tsutsugamushi str. Boryong]
          Length = 312

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 183/305 (60%), Gaps = 7/305 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ KLT   + T+ KL   IT + S + +     E+LE++L+ +D GV     I+E   
Sbjct: 3   SWLNKLTAAVSKTTNKLTVQITKLFSEKTITKESIEQLEEVLLSADFGVTATNNIIENFK 62

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVI 128
           T ++ K++ +  +  ++++ I K   P   P   +   +P   +V+++ G+NG GKTT I
Sbjct: 63  TIKFNKNIQLDDIKSELAKSIIKFAFPNGNP---ELHIKPDVLNVMIICGINGNGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS   +  G K+ +AA DTFR+AA +QL++WA+R+ +       G+D A++AY+A   
Sbjct: 120 GKLSHYYNLQGQKIAIAACDTFRAAATEQLEVWANRSGSYLFKGNPGADPASVAYQAVSW 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A   K+++L IDTAGRLHN+  LM  + K+ +V+ +    +    L  LDAT GQNA  Q
Sbjct: 180 AIDNKINILFIDTAGRLHNHKNLMDQLKKIKKVINQYHSSSVCYTLLTLDATNGQNAFTQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-S 307
           VE F  +    G+I+TK+D T++ G  + I    KIP+YF+G+GE I+D++ F A DF +
Sbjct: 240 VEQFQDIVLLDGVIITKLDSTSKAGVAVGIAEKFKIPIYFIGIGEQIDDIKEFNASDFVN 299

Query: 308 AVITG 312
           A++ G
Sbjct: 300 AILAG 304


>gi|115373711|ref|ZP_01461005.1| cell division protein FtsY [Stigmatella aurantiaca DW4/3-1]
 gi|310823616|ref|YP_003955974.1| cell division transporter substrate-binding protein FtsY
           [Stigmatella aurantiaca DW4/3-1]
 gi|115369258|gb|EAU68199.1| cell division protein FtsY [Stigmatella aurantiaca DW4/3-1]
 gi|309396688|gb|ADO74147.1| Cell division transporter substrate-binding protein FtsY
           [Stigmatella aurantiaca DW4/3-1]
          Length = 527

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 118/272 (43%), Positives = 174/272 (63%), Gaps = 4/272 (1%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKM 95
            +R++D+ V  ELE++L  +DIGV  A  +V+    K    ++S  +R+   + E + ++
Sbjct: 252 QNRQVDESVLAELEEILFTADIGVRTASNLVDLAREKLKRNELSNPERIKALIREEVARI 311

Query: 96  L-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           + +P+  P + +    PHV++VVGVNG GKTT IGKL+ +++  G KV+LAAGDTFR+AA
Sbjct: 312 VDLPV--PRSLEGGGPPHVVMVVGVNGAGKTTTIGKLAAQLTGQGKKVVLAAGDTFRAAA 369

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +QL +WA+R  A+ V  E   D  A+ + A K+AQ     V+I DTAGRLH  + LM  
Sbjct: 370 TEQLDVWAERAQAELVKGEENGDPGAVVFNAVKRAQEIGAHVVIADTAGRLHTKAPLMEE 429

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+ RVL +    APH VL VLD+T GQNA++Q + FH   G   + +TK+DGTA+GG 
Sbjct: 430 LKKVKRVLGKALEGAPHEVLLVLDSTNGQNAIQQAKQFHEAVGINAIALTKLDGTAKGGV 489

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +I I    K+PV ++GVGE I+DL  F  +DF
Sbjct: 490 IIGICDELKLPVVWVGVGEKISDLRRFEPRDF 521


>gi|237736962|ref|ZP_04567443.1| cell division protein ftsY [Fusobacterium mortiferum ATCC 9817]
 gi|229420824|gb|EEO35871.1| cell division protein ftsY [Fusobacterium mortiferum ATCC 9817]
          Length = 395

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 131/310 (42%), Positives = 191/310 (61%), Gaps = 11/310 (3%)

Query: 11  LSWIRKLTKGF-ASTSLKL---KEGI-----TDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  +++  KGF AS   KL   +EG+     + I+    +DD + EELED+LI+SDIG+ 
Sbjct: 85  IKEVKEEKKGFFASLKDKLFKSREGLFGTLKSFILGRSVIDDEMYEELEDILIQSDIGMD 144

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  KIV+EL  +   + V   + +Y V  E++   L+  +   + +   + +VILVVGVN
Sbjct: 145 MTVKIVKELEKEVKRRGVKDPKEVYPVLREVMEGFLIKENNEIHIE-DGKLNVILVVGVN 203

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ K    G KV+L AGDTFR+AAI+QL+ WA+R  A+ V S  GSD  A
Sbjct: 204 GVGKTTTIGKLASKYVKEGKKVILGAGDTFRAAAIEQLEEWANRAGAEIVKSTQGSDPGA 263

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++    AQ++  D+ IIDTAGRLHN + LM  + K+  ++K+      +  + V+D T
Sbjct: 264 VVFDTLVAAQSRGADIAIIDTAGRLHNKNNLMKELEKIHNIIKKKLGEQKYESILVIDGT 323

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q ++F+ V   TG I+TK+DGTA+GG +  I    K P+ F+GVGE I DL  
Sbjct: 324 TGQNALNQAKVFNEVTELTGFIITKLDGTAKGGIVFSISEEIKKPIKFIGVGEKIEDLRE 383

Query: 301 FVAKDFSAVI 310
           F A ++   I
Sbjct: 384 FNANEYIQAI 393


>gi|299068055|emb|CBJ39269.1| Signal recognition particle (SRP) GTPase [Ralstonia solanacearum
           CMR15]
          Length = 328

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 180/304 (59%), Gaps = 13/304 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL- 71
           W+ +L  G + TS    + +T +    ++D+ + EELE  L+ +D GV   + ++ EL  
Sbjct: 34  WMSRLRSGLSKTS----KSLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLNELRR 89

Query: 72  ---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              T+R      V+  L D   L+ ++L PL K        +P VI++ GVNG GKTT I
Sbjct: 90  RVKTQRIETAEGVKTALRD---LLIELLHPLEKTMVLG-RDQPTVIMIAGVNGAGKTTSI 145

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL K     G  V+LAAGDTFR+AA +QL IW  R +   V  E G D AA+ ++A   
Sbjct: 146 GKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESG-DPAAVIFDAVNA 204

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +D+++ DTAGRL     LM  + K+ RV+ +    APH  L V+DA TGQNAL Q
Sbjct: 205 ARARGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQNALAQ 264

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++F+ 
Sbjct: 265 VKAFDDTLGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFAD 324

Query: 309 VITG 312
            + G
Sbjct: 325 ALLG 328


>gi|332976625|gb|EGK13466.1| cell division protein FtsY [Desmospora sp. 8437]
          Length = 331

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/307 (41%), Positives = 192/307 (62%), Gaps = 6/307 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + V+  + S  +K   G + TS  L   +  + S  R+D+ + EELE++LI +D+GV   
Sbjct: 9   ESVSRTTDSVTQKFRSGLSKTSASLVGAMDSVFSRNRIDEELYEELEEVLIGADVGVNTT 68

Query: 64  QKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGV 119
            +IVE+L T+   R  KD    + L  +SE++  +L    +    +       +IL+VGV
Sbjct: 69  LEIVEKLRTEVKERKLKDPGELKSL--LSEILVGILQGDGEDEGMNLKEDGLSIILIVGV 126

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+    + G KV+LAAGDTFR+ AI+QL+IW +R   D +  + GSD A
Sbjct: 127 NGVGKTTTIGKLAHHYKEQGRKVVLAAGDTFRAGAIEQLEIWGERVGVDVIRHQAGSDPA 186

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+  + A+A+  D+L+ DTAGRL N   LM  + K+ RV+ R  P APH  L VLD+
Sbjct: 187 AVIYDGIQAAKARGADILLCDTAGRLQNKVNLMEELKKVHRVISREVPEAPHETLLVLDS 246

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA++Q ++FH     TG+++TKMDGTA+GG  + I    ++PV ++G+GE ++DL+
Sbjct: 247 TTGQNAMQQAKIFHEATRITGIVLTKMDGTAKGGIALAIRQELRVPVKWVGLGEQMDDLQ 306

Query: 300 PFVAKDF 306
           PF  + F
Sbjct: 307 PFDGEQF 313


>gi|253573489|ref|ZP_04850832.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251847017|gb|EES75022.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 335

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/311 (41%), Positives = 193/311 (62%), Gaps = 14/311 (4%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           + +AS++ S  ++   G   +     E +T++++ R+ +D+   EELE++LI +D+GV  
Sbjct: 9   ESIASKTESVTKQFRDGLEKSRKGFVEKVTELVTRRKKIDEEFFEELEEILIGADVGVNT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             K++++L  +        QR + + SEL   +   L++    D     H       VIL
Sbjct: 69  VMKLIDDLRAEVK------QRRIENASELQPLLSEKLTQLLRGDEDSEMHLNPDGISVIL 122

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+      G KV+LAAGDTFR+ AI+QL++W +R   D +  + G
Sbjct: 123 FVGVNGVGKTTTIGKLAHFYKQQGKKVILAAGDTFRAGAIEQLEVWGNRVGVDVIKQQAG 182

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ ++A + A+ +  D+L+ DTAGRL N S LM  + K+ RV++R  P APH VL 
Sbjct: 183 SDPAAVMFDAVQAAKQRGADILLCDTAGRLQNKSNLMEELNKIYRVIQREIPGAPHEVLM 242

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNAL Q ++F   +G TGL++TK+DGTA+GG +I I     +PV F+G+GE +
Sbjct: 243 VLDATTGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRQELSLPVKFVGLGEKM 302

Query: 296 NDLEPFVAKDF 306
            DL+ F ++ F
Sbjct: 303 EDLQKFDSEQF 313


>gi|148263169|ref|YP_001229875.1| signal recognition particle-docking protein FtsY [Geobacter
           uraniireducens Rf4]
 gi|146396669|gb|ABQ25302.1| signal recognition particle-docking protein FtsY [Geobacter
           uraniireducens Rf4]
          Length = 340

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/305 (41%), Positives = 192/305 (62%), Gaps = 13/305 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---E 68
           +  +L +G + T   +   I T ++  +++D    EELE++LI +D+GV    +++   E
Sbjct: 41  FFERLKRGLSKTHESIVGRIDTLLLGKKQIDADTLEELEEILITADMGVKTTVELIRTLE 100

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + L +   +D  ++++ L D    I   L   +   + + +  P+VILV+GVNGVGKTT 
Sbjct: 101 QRLKRNELQDGEALKKALKDE---ITARLSQHTTALDVNAAS-PYVILVIGVNGVGKTTT 156

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ K    G KV+LAAGDTFR+AA +QL++W +R  AD V  + GSD +A+ ++A K
Sbjct: 157 IGKLAAKFRSEGKKVLLAAGDTFRAAAAEQLEVWGNRVGADVVRHKEGSDPSAVVFDACK 216

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A+  D+L+IDTAGRLH    LM  + K+ RVL+R  P APH  + +LDA TGQNA+ 
Sbjct: 217 AALARNSDILLIDTAGRLHTKVNLMEEMKKIRRVLEREIPGAPHETMLILDAATGQNAIS 276

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVAKD 305
           Q ++F   A  +G+++TK+DGTA+GG  I + V+H+  IPV ++GVGEG++DL  F    
Sbjct: 277 QAKLFKEAAQVSGVVLTKLDGTAKGG--IVVAVSHEFAIPVRYIGVGEGVDDLREFDPLQ 334

Query: 306 FSAVI 310
           F   I
Sbjct: 335 FVEAI 339


>gi|167763124|ref|ZP_02435251.1| hypothetical protein BACSTE_01493 [Bacteroides stercoris ATCC
           43183]
 gi|167699464|gb|EDS16043.1| hypothetical protein BACSTE_01493 [Bacteroides stercoris ATCC
           43183]
          Length = 319

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 179/296 (60%), Gaps = 6/296 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73
           L KG + T   +   I   I+ + ++DD V + LE++LI SD+GV    KI+E +  +  
Sbjct: 15  LDKGLSKTKESVFGKIARAIAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIERIEKRAA 74

Query: 74  --RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +Y     +  +L D ++ L+ +        F    + +P+VI+VVGVNGVGKTT IGK
Sbjct: 75  DEKYMNAKELNVILRDEIAALLTENNSDDVDDFETPVTKKPYVIMVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG  V L A DTFR+AA++QL IW +R     +  ++G+D A++A++    A 
Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVIKQKMGADPASVAFDTLSSAV 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +TGQNA  Q +
Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F      T + +TK+DGTA+GG +I I    KIPV ++G+GEGI DL+ F  K+F
Sbjct: 255 QFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIEDLQVFRKKEF 310


>gi|256845346|ref|ZP_05550804.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           3_1_36A2]
 gi|256718905|gb|EEU32460.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           3_1_36A2]
          Length = 344

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 134/316 (42%), Positives = 195/316 (61%), Gaps = 24/316 (7%)

Query: 3   NQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           NQKV  S+ L+   K  +GF S   KLK   T   S  ++DD + EELEDLL++SD+G+ 
Sbjct: 43  NQKVNISQRLT---KSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSDVGLT 93

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--NWDF-----SHRPHVI 114
           +   ++ +L      K+V   +V  D +E ++++L  L   F  + D      +++ +VI
Sbjct: 94  MTTNLINQL-----EKEVKANKV--DNTEKVYEILKRLMSEFLLSQDSKIYLKNNKINVI 146

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNGVGKTT IGKL+ K  + G KV+L AGDTFR+AA++QL+ WA R   D V    
Sbjct: 147 LIVGVNGVGKTTTIGKLALKYKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGRE 206

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D A++ Y+   +A++ K DV+IIDTAGRLHN + LM  + K+  ++K+      +  L
Sbjct: 207 GADPASVVYDTLSRAESTKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESL 266

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+D TTGQN L Q + F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE 
Sbjct: 267 LVIDGTTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEK 326

Query: 295 INDLEPFVAKDFSAVI 310
           I DL  F AKDF   I
Sbjct: 327 IGDLIEFNAKDFVEAI 342


>gi|237716498|ref|ZP_04546979.1| recognition particle-docking protein FtsY [Bacteroides sp. D1]
 gi|262408096|ref|ZP_06084644.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           2_1_22]
 gi|294809490|ref|ZP_06768193.1| signal recognition particle-docking protein FtsY [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444145|gb|EEO49936.1| recognition particle-docking protein FtsY [Bacteroides sp. D1]
 gi|262354904|gb|EEZ03996.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           2_1_22]
 gi|294443308|gb|EFG12072.1| signal recognition particle-docking protein FtsY [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 319

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 123/297 (41%), Positives = 180/297 (60%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  KR 
Sbjct: 15  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A D  V+ Q +   + + I  +L   +      F+   + +P+VI+VVGVNGVGKTT IG
Sbjct: 74  AADKYVNTQELNLILRDEIAALLTENNSNDVADFDVPITRKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A++AY+    A
Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAYDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V+K++ P+AP  VL VLD +TGQNA  Q 
Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F   +F
Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 310


>gi|464390|sp|P14929|FTSY_NEIGO RecName: Full=Cell division protein ftsY homolog
          Length = 416

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 3/297 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV
Sbjct: 295 KAR-IDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQV 353

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F
Sbjct: 354 KAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAF 410


>gi|257066451|ref|YP_003152707.1| signal recognition particle-docking protein FtsY [Anaerococcus
           prevotii DSM 20548]
 gi|256798331|gb|ACV28986.1| signal recognition particle-docking protein FtsY [Anaerococcus
           prevotii DSM 20548]
          Length = 400

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 130/303 (42%), Positives = 192/303 (63%), Gaps = 3/303 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           A E + +  K+ KG + T  +  +G+T++ +   ++DD + EELE++LI +DIG+    +
Sbjct: 93  ADEGIGFFAKIKKGLSKTRDQFSQGLTNLFTRNVKIDDDLYEELEEILISADIGMKSTLE 152

Query: 66  IVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVG 123
           IV+EL  +   + +     +Y V  E++ K L   +   N + + +   VILV+GVNGVG
Sbjct: 153 IVDELRDEIKKRSIKEADQIYPVLQEIMIKKLDEKNLDNNLNIADKNLSVILVIGVNGVG 212

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+  +   G  VMLAA DTFR+AAI+QL  WA+++  + +  + GSD +A+ +
Sbjct: 213 KTTTIGKLANNLKKEGKNVMLAAADTFRAAAIEQLGEWAEKSDIEMISHKEGSDPSAVIF 272

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A K A+AK  DVLI DTAGRLHN   LM  + K+ + +      A    L VLDATTGQ
Sbjct: 273 DAIKSAKAKNSDVLICDTAGRLHNKKNLMKELEKINKTIDTHAKGASRDNLLVLDATTGQ 332

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q+  F  V   +GLI+TK+DGTA+GG + P+ V  ++PV ++GVGEGINDLE F +
Sbjct: 333 NAVSQLREFKNVTDISGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGINDLEKFDS 392

Query: 304 KDF 306
           K F
Sbjct: 393 KTF 395


>gi|261408031|ref|YP_003244272.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           Y412MC10]
 gi|261284494|gb|ACX66465.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           Y412MC10]
          Length = 333

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 127/324 (39%), Positives = 200/324 (61%), Gaps = 14/324 (4%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAV 62
           + ++S++ +  ++   G   T     E ++D +I  +++D+   EELE++LI +D+GV  
Sbjct: 9   ESISSKTENVTKQFRDGLEKTRKGFIEKVSDLVIRRKKIDEEFYEELEEILIGADVGVNT 68

Query: 63  AQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPH---VIL 115
              ++++L   + KR  +D +      D+  ++ + LM L +   + +    P    VIL
Sbjct: 69  VMDLMDDLRAEVKKRRIEDAA------DLQPVLSEKLMGLLRDDSSNELRENPDGITVIL 122

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ +    G KV+LAAGDTFR+ AI+QL++W +R   + +  + G
Sbjct: 123 FVGVNGVGKTTTIGKLAHRYKQEGKKVLLAAGDTFRAGAIEQLEVWGERVGVEVIKQQPG 182

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ ++A + A+ ++ DVL+ DTAGRL N + LM  + K+ RV++R  P APH VL 
Sbjct: 183 SDPAAVMFDAVQAAKQRQADVLLCDTAGRLQNKTNLMEELNKIFRVIQREIPSAPHEVLM 242

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNAL Q ++F   +G TGL++TK+DGTA+GG +I I     +PV  +G+GE +
Sbjct: 243 VLDATTGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRQELNLPVKLVGLGEKM 302

Query: 296 NDLEPFVAKDFSAVITGCLDYGEE 319
            DL+ F ++ F   +   L   EE
Sbjct: 303 GDLQTFDSEQFVHALFAGLIKEEE 326


>gi|294785356|ref|ZP_06750644.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           3_1_27]
 gi|294487070|gb|EFG34432.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           3_1_27]
          Length = 344

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 133/311 (42%), Positives = 193/311 (62%), Gaps = 14/311 (4%)

Query: 3   NQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           NQKV  S+ L+   K  +GF S   KLK   T   S  ++DD + EELEDLL++SD+G+ 
Sbjct: 43  NQKVNISQRLT---KSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSDVGLN 93

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVILVVGV 119
           +   ++ +L  +  +K V     +Y++   L+ + L+   SK +  D  ++ +VIL+VGV
Sbjct: 94  MTTNLINQLEKEVKSKKVDNTNEVYEILKRLMSEFLLSQDSKIYLED--NKINVILIVGV 151

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ K  + G KV+L AGDTFR+AA++QL+ WA R   D V    G+D A
Sbjct: 152 NGVGKTTTIGKLALKYKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADPA 211

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+   +A+  K DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D 
Sbjct: 212 SVVYDTLSRAEITKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDG 271

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN L Q + F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL 
Sbjct: 272 TTGQNGLNQAKEFNSVTALTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLI 331

Query: 300 PFVAKDFSAVI 310
            F AKDF   I
Sbjct: 332 EFNAKDFVEAI 342


>gi|325285394|ref|YP_004261184.1| signal recognition particle-docking protein FtsY [Cellulophaga
           lytica DSM 7489]
 gi|324320848|gb|ADY28313.1| signal recognition particle-docking protein FtsY [Cellulophaga
           lytica DSM 7489]
          Length = 320

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 118/273 (43%), Positives = 171/273 (62%), Gaps = 7/273 (2%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM 97
           ++DD V + LE++L+ SD+GV    KI++ +   R +KD  +    +   + E I  +L 
Sbjct: 40  KVDDDVLDNLEEILVTSDVGVDTTLKIIDRI-EARVSKDKYLGTDELNVILREEIAALLS 98

Query: 98  PLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             +     +F      +P+VI+VVGVNGVGKTT IGK++ +    GLKV+L A DTFR+A
Sbjct: 99  ETNTGNETEFVVPKGVKPYVIMVVGVNGVGKTTTIGKMAYQFKKQGLKVVLGAADTFRAA 158

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           AIDQL++WADR     V  ++GSD A++A++    A  +  DV+IIDTAGRLHN   LM 
Sbjct: 159 AIDQLQVWADRVDIPIVKQKMGSDPASVAFDTLSSAVTQNADVVIIDTAGRLHNKVNLMN 218

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ RV+ ++  + PH V+ VLD +TGQNA  Q + F      T L +TK+DGTA+GG
Sbjct: 219 ELTKVKRVMHKVVDNTPHDVMLVLDGSTGQNAFEQAKQFTKATEVTSLAVTKLDGTAKGG 278

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            +I I    +IPV ++GVGEGI DL+ F   +F
Sbjct: 279 VVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEF 311


>gi|189465616|ref|ZP_03014401.1| hypothetical protein BACINT_01974 [Bacteroides intestinalis DSM
           17393]
 gi|189437890|gb|EDV06875.1| hypothetical protein BACINT_01974 [Bacteroides intestinalis DSM
           17393]
          Length = 319

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 121/296 (40%), Positives = 179/296 (60%), Gaps = 6/296 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVA----VAQKIVEELL 71
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     + Q+I +   
Sbjct: 15  LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIQRIEKRAA 74

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           +++Y     +  +L D ++ L+ +        F    + +P+VI+VVGVNGVGKTT IGK
Sbjct: 75  SEKYMNAQELNTILRDEIAALLTENNSDDVDDFEAPIAKKPYVIMVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG  V L A DTFR+AA++QL IW  R     V  ++G+D A++AY+    A 
Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLDIWGGRVGVPVVKQKMGADPASVAYDTLSSAV 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +TGQNA  Q +
Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F  K+F
Sbjct: 255 QFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310


>gi|189183987|ref|YP_001937772.1| signal recognition particle receptor FtsY [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180758|dbj|BAG40538.1| signal recognition particle receptor FtsY [Orientia tsutsugamushi
           str. Ikeda]
          Length = 315

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 183/305 (60%), Gaps = 7/305 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ KLT   + T+ KL   IT + S + +     E+LE++L+ +D GV     I+E   
Sbjct: 6   SWLNKLTAAVSKTTNKLTVQITKLFSEKTITKESIEQLEEVLLSADFGVTATNNIIENFK 65

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVI 128
           T ++ K++ +  +  ++++ I K   P   P   +   +P   +V+++ G+NG GKTT I
Sbjct: 66  TIKFNKNIQLDDIKSELAKSIIKFAFPNGNP---ELHIKPGVLNVMIICGINGNGKTTTI 122

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS   +  G KV +AA DTFR+AA +QL+IWA+R+ +       G+D A++AY+A   
Sbjct: 123 GKLSHYYNLQGQKVAIAACDTFRAAATEQLEIWANRSGSYLFKGNPGADPASVAYQAAGW 182

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A   K+++L IDTAGRLHN+  LM  + K+ +V+ +    +    L  LDAT GQNA  Q
Sbjct: 183 AIDNKMNILFIDTAGRLHNHKNLMDQLKKIKKVINQYHSSSVCYTLLTLDATNGQNAFTQ 242

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-S 307
           VE F  +    G+I+TK+D T++ G  + I    KIP+YF+G+GE I+D++ F A DF +
Sbjct: 243 VEQFQDIVLLDGVIITKLDSTSKAGVAVGIAEKFKIPIYFIGIGEQIDDIKEFNASDFVN 302

Query: 308 AVITG 312
           A++ G
Sbjct: 303 AILAG 307


>gi|260663571|ref|ZP_05864461.1| signal recognition particle receptor [Lactobacillus fermentum
           28-3-CHN]
 gi|260552112|gb|EEX25165.1| signal recognition particle receptor [Lactobacillus fermentum
           28-3-CHN]
          Length = 509

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 118/279 (42%), Positives = 170/279 (60%), Gaps = 18/279 (6%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK------RYAKDVS---VQRV--LYD 87
           R +D+   + LED+LI SD+G  +A K+ + L  +      +  +DVS   ++++  LYD
Sbjct: 226 RHVDEDFFDNLEDMLIESDVGYEMAMKLSDSLREEVRLQNAKNKQDVSNVIIEKMVDLYD 285

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
            +    +  + ++          P VI+ VGVNG GKTT IGK++ +    G +V+LAA 
Sbjct: 286 EAGAGEQTTLTMA-------DQGPTVIMFVGVNGAGKTTTIGKMAARFKGQGKRVLLAAA 338

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+ A +QL++WA R   D V     SD AA+ ++A  +A+    DVL +DTAGRL N
Sbjct: 339 DTFRAGATEQLEVWAQRDGVDIVTGPENSDPAAVVFDAVTKAKKDNYDVLFVDTAGRLQN 398

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
              LM  + KM R+L R  P APH VL VLDATTGQNAL Q ++F      TG+++TK+D
Sbjct: 399 KVNLMNELAKMKRILTREIPDAPHEVLLVLDATTGQNALTQAKLFKETTDVTGIVLTKLD 458

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GTARGG ++ I     +PV F+G+GE ++DLE F A+DF
Sbjct: 459 GTARGGIVLAIRNELHLPVKFVGLGEKVSDLEEFNAQDF 497


>gi|317476989|ref|ZP_07936231.1| signal recognition particle-docking protein FtsY [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316906782|gb|EFV28494.1| signal recognition particle-docking protein FtsY [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 319

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 121/296 (40%), Positives = 178/296 (60%), Gaps = 6/296 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV    KI+E +  +  
Sbjct: 15  LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIERIEKRAA 74

Query: 74  --RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +Y     +  +L D ++ L+ +        F    + +P+VI+VVGVNGVGKTT IGK
Sbjct: 75  DEKYMNAQELNMILRDEIAALLTENNSDDVDDFETPITKKPYVIMVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    G  V L A DTFR+AA++QL IW +R     V  ++GSD A++A++    A 
Sbjct: 135 LAYQFKKTGKSVYLGAADTFRAAAVEQLVIWGERVGVPVVKQKMGSDPASVAFDTLSSAV 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +TGQNA  Q +
Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F  K+F
Sbjct: 255 QFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310


>gi|329929610|ref|ZP_08283317.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           HGF5]
 gi|328936255|gb|EGG32707.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           HGF5]
          Length = 333

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 127/324 (39%), Positives = 200/324 (61%), Gaps = 14/324 (4%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAV 62
           + ++S++ +  ++   G   T     E ++D +I  +++D+   EELE++LI +D+GV  
Sbjct: 9   ESISSKTENVTKQFRDGLEKTRKGFIEKVSDLVIRRKKIDEEFYEELEEILIGADVGVNT 68

Query: 63  AQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPH---VIL 115
              ++++L   + KR  +D +      D+  ++ + LM L +   + +    P    VIL
Sbjct: 69  VMDLMDDLRAEVKKRRIEDAA------DLQPVLSEKLMGLLRDDSSNELRENPDGITVIL 122

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ +    G KV+LAAGDTFR+ AI+QL++W +R   + +  + G
Sbjct: 123 FVGVNGVGKTTTIGKLAHRYKQEGKKVLLAAGDTFRAGAIEQLEVWGERVGVEVIKQQPG 182

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ ++A + A+ ++ DVL+ DTAGRL N + LM  + K+ RV++R  P APH VL 
Sbjct: 183 SDPAAVMFDAVQAAKQRQADVLLCDTAGRLQNKTNLMEELNKIFRVIQREIPSAPHEVLM 242

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNAL Q ++F   +G TGL++TK+DGTA+GG +I I     +PV  +G+GE +
Sbjct: 243 VLDATTGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRQELNLPVKLVGLGEKM 302

Query: 296 NDLEPFVAKDFSAVITGCLDYGEE 319
            DL+ F ++ F   +   L   EE
Sbjct: 303 GDLQTFDSEQFVHALFAGLIKEEE 326


>gi|299821775|ref|ZP_07053663.1| cell division protein FtsY [Listeria grayi DSM 20601]
 gi|299817440|gb|EFI84676.1| cell division protein FtsY [Listeria grayi DSM 20601]
          Length = 327

 Score =  215 bits (548), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 126/310 (40%), Positives = 195/310 (62%), Gaps = 10/310 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+  ++ S   K   G + T       +  +++  R++D+   EELE++LI +D+G   
Sbjct: 9   EKITGQTDSVTGKFKDGLSKTRQNFSGKLNQMMARYRKVDEEFFEELEEVLIGADVGFDT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILV 116
             ++V++L  +   +++S  +   +V E+I + L+ +      +KP       R ++IL 
Sbjct: 69  VMELVDQLREEVKLRNISDPK---EVQEVIVEKLVAIYEGEEEAKPALDIKDGRLNIILF 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGK++  +   G KVMLAAGDTFR+ AI+QL++W +R + + +    GS
Sbjct: 126 VGVNGVGKTTTIGKMAHMLQSQGKKVMLAAGDTFRAGAIEQLEVWGERANVEVIKQTAGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV+ R  P APH VL V
Sbjct: 186 DPAAVMYDALQAAKARGVDVLLCDTAGRLQNKVNLMNELEKVKRVIGREVPDAPHEVLLV 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA  Q + F      +G+++TK+DGTA+GG +I I    +IPV ++G+GE I+
Sbjct: 246 LDATTGQNAFVQAKQFKEATDVSGIVLTKLDGTAKGGIVIAIRNGLQIPVKYIGLGEKID 305

Query: 297 DLEPFVAKDF 306
           DL+PF A+D+
Sbjct: 306 DLQPFDAEDY 315


>gi|329954831|ref|ZP_08295848.1| signal recognition particle-docking protein FtsY [Bacteroides
           clarus YIT 12056]
 gi|328526935|gb|EGF53946.1| signal recognition particle-docking protein FtsY [Bacteroides
           clarus YIT 12056]
          Length = 319

 Score =  215 bits (548), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 120/296 (40%), Positives = 179/296 (60%), Gaps = 6/296 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV    KI+E +  +  
Sbjct: 15  LDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIERIEKRAA 74

Query: 74  --RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +Y     +  +L D ++ L+ +        F    + +P+VI+VVGVNGVGKTT IGK
Sbjct: 75  DEKYMNAQELNMILRDEIAALLTENNSDDVDDFETPITKKPYVIMVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG  V L A DTFR+AA++QL IW +R     +  ++G+D A++A++    A 
Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVIKQKMGADPASVAFDTLSSAV 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +TGQNA  Q +
Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F  K+F
Sbjct: 255 QFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310


>gi|294645090|ref|ZP_06722816.1| signal recognition particle-docking protein FtsY [Bacteroides
           ovatus SD CC 2a]
 gi|292639596|gb|EFF57888.1| signal recognition particle-docking protein FtsY [Bacteroides
           ovatus SD CC 2a]
          Length = 349

 Score =  215 bits (548), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 123/297 (41%), Positives = 180/297 (60%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  KR 
Sbjct: 45  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 103

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A D  V+ Q +   + + I  +L   +      F+   + +P+VI+VVGVNGVGKTT IG
Sbjct: 104 AADKYVNTQELNLILRDEIAALLTENNSNDVADFDVPITRKPYVIMVVGVNGVGKTTTIG 163

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A++AY+    A
Sbjct: 164 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAYDTLSSA 223

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V+K++ P+AP  VL VLD +TGQNA  Q 
Sbjct: 224 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGSTGQNAFEQA 283

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F   +F
Sbjct: 284 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 340


>gi|32490820|ref|NP_871074.1| hypothetical protein WGLp071 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166026|dbj|BAC24217.1| ftsY [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 326

 Score =  215 bits (548), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 118/274 (43%), Positives = 169/274 (61%), Gaps = 2/274 (0%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELI 92
           +I  S+++D+ + EE+E  L+ SDIGV   QKI+ EL      K +     +Y+ + E I
Sbjct: 45  NIFKSKKIDEKLFEEIETHLLTSDIGVKTTQKIINELNFLNKNKKIKNSENMYEHLKEKI 104

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
             ML+   +P        P +IL+VGVNGVGKTT I K++KK    G KVM+ AGDTFR+
Sbjct: 105 SHMLLNAQEPL-LITEKFPFIILIVGVNGVGKTTTIIKIAKKYKSEGKKVMVVAGDTFRA 163

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AIDQL+I         +C    SDA+++ + A K A+    DVLIIDTAGRLHN   LM
Sbjct: 164 GAIDQLEILGKNNKIPVICDYKKSDASSIIFTAIKNAKKNNADVLIIDTAGRLHNKFHLM 223

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+++V+K+LDP APH  + ++DA TGQN L QVE F+     +G+ +TK+DGT++G
Sbjct: 224 EELKKIVKVIKKLDPSAPHESMLIIDANTGQNTLNQVEFFNNAIKISGITLTKLDGTSKG 283

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G +I I     IP+ ++G G+  ND+  F + DF
Sbjct: 284 GIIIAIADQFNIPIRYIGTGKDNNDIYKFKSYDF 317


>gi|27262314|gb|AAN87438.1| signal recognition particle receptor FtsY [Heliobacillus mobilis]
          Length = 364

 Score =  215 bits (548), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 119/260 (45%), Positives = 170/260 (65%), Gaps = 4/260 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L +G   T   L + +  +++ R ++DD + +ELE+ LI +D+G   + ++VE L  K 
Sbjct: 7   RLKEGLTRTRQNLVDKVEALVTGRTKIDDDLYDELEEALISADVGAETSIELVERLRRKV 66

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             + +S   +L  +  E I  +L   + P N    ++P VIL+VGVNGVGKTT I KL+ 
Sbjct: 67  KEQKISDPSLLQGLLQEEIAAILGGEAIPVN--LGNQPTVILIVGVNGVGKTTTIAKLAH 124

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +    G KV+LAAGDTFR+AAIDQL+IW  R   + +  + G+D +A+A++A + A++++
Sbjct: 125 RWKQEGRKVLLAAGDTFRAAAIDQLEIWGQRVGVEVIRHQEGADPSAVAFDAVQAAKSRE 184

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DVLIIDTAGRLHN S LM  + K+ RVL R  P APH  L VLDATTGQNAL Q  +F 
Sbjct: 185 SDVLIIDTAGRLHNKSHLMNELSKINRVLGRAMPGAPHETLLVLDATTGQNALSQARIFG 244

Query: 254 AVAGTTGLIMTKMDGTARGG 273
              G TGL++TK+DGTA+GG
Sbjct: 245 EAVGLTGLVLTKLDGTAKGG 264


>gi|317495480|ref|ZP_07953848.1| signal recognition particle-docking protein FtsY [Gemella
           moribillum M424]
 gi|316914294|gb|EFV35772.1| signal recognition particle-docking protein FtsY [Gemella
           moribillum M424]
          Length = 348

 Score =  215 bits (548), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 130/297 (43%), Positives = 183/297 (61%), Gaps = 16/297 (5%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   +       + ++ISS R +++   E+LE+LLI+SD+      ++V+     
Sbjct: 39  EKFKKGLKKSRDSFSNALNNLISSYREINEEFFEDLEELLIQSDVSYNTVLELVD----- 93

Query: 74  RYAKDVSVQRVLYDVSEL----IHKML-MPLSKPFNWDFSHRPH----VILVVGVNGVGK 124
            Y K+ S +R L + SEL    I K++ + +      D  + P     V L VGVNGVGK
Sbjct: 94  -YLKEESQRRNLKEPSELQEMIIEKLVDIYMEGTVKADLKYAPEKELSVFLFVGVNGVGK 152

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+  +   G KV++AAGDTFR+ AIDQL +WA R+ AD V S  G+D+AA+ ++
Sbjct: 153 TTSIGKLAHNLKKEGKKVLIAAGDTFRAGAIDQLDVWAKRSGADIVKSHEGADSAAIIFD 212

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+AK  DVL+ DTAGRL N   LM  + K++RV+KR  P  PH VL  +DATTGQN
Sbjct: 213 AIQSAKAKGYDVLLCDTAGRLQNKDYLMKELEKIVRVIKREVPEGPHEVLLTIDATTGQN 272

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + Q + F  V+  TG+I+TK+DGTA+GG +I I     IPV  +G+GE I+DLE F
Sbjct: 273 GILQAKTFKEVSDVTGVILTKLDGTAKGGIVIAIKKELGIPVKLVGLGENIDDLEVF 329


>gi|255009414|ref|ZP_05281540.1| putative recognition particle-docking protein [Bacteroides fragilis
           3_1_12]
 gi|313147173|ref|ZP_07809366.1| recognition particle-docking protein FtsY [Bacteroides fragilis
           3_1_12]
 gi|313135940|gb|EFR53300.1| recognition particle-docking protein FtsY [Bacteroides fragilis
           3_1_12]
          Length = 319

 Score =  215 bits (548), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 124/297 (41%), Positives = 180/297 (60%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  KR 
Sbjct: 15  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIG 129
           A+D  V+ Q +   + E I  +L   +     DF      +P+VI+VVGVNGVGKTT IG
Sbjct: 74  AEDKYVNTQELNSILREEIAALLTENNSDDVADFDVPVEKKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   A   V L A DTFR+AA++QL IW DR     +  ++G+D A++A++    A
Sbjct: 134 KLAYQFKKASKSVYLGAADTFRAAAVEQLVIWGDRVGVPVIKQKMGADPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +TGQNA  Q 
Sbjct: 194 VANDADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F  K+F
Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310


>gi|239826587|ref|YP_002949211.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           WCH70]
 gi|239806880|gb|ACS23945.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           WCH70]
          Length = 329

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 131/308 (42%), Positives = 191/308 (62%), Gaps = 16/308 (5%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+  ++ S   K  +G + T       + D+I+  R++D+   EELE++LI +D+GV  
Sbjct: 9   EKITKQADSVTEKFKQGLSKTRDSFAGRVNDLIARYRKVDEEFFEELEEILISADVGVNT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---------V 113
             ++V+EL  K   K    +R + D  E+   +   L + +  D   +           V
Sbjct: 69  VMELVDEL--KMEVK----RRNIQDPKEMKAVISEKLVEIYRGDDDAKAELNIQENGLTV 122

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL VGVNGVGKTT IGKL+ K+   G  VMLAAGDTFR+ AI+QL++W +R  A+ +   
Sbjct: 123 ILFVGVNGVGKTTTIGKLAHKLKSEGKTVMLAAGDTFRAGAIEQLEVWGERVGAEVIKQS 182

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            GSD AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV++R  P APH V
Sbjct: 183 AGSDPAAVIYDAIQAAKARHVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEV 242

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLDATTGQNA+ Q ++F  V   TG+++TK+DGTA+GG ++ I     IPV F+G+GE
Sbjct: 243 LLVLDATTGQNAMSQAKIFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGE 302

Query: 294 GINDLEPF 301
            ++DL+PF
Sbjct: 303 KMDDLQPF 310


>gi|222151068|ref|YP_002560222.1| signal recognition particle GTPase FtsY [Macrococcus caseolyticus
           JCSC5402]
 gi|222120191|dbj|BAH17526.1| signal recognition particle GTPase FtsY [Macrococcus caseolyticus
           JCSC5402]
          Length = 416

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 119/298 (39%), Positives = 181/298 (60%), Gaps = 10/298 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K  +G   +    +  + D+++  R +D+   E LE++LI++D+G      +VE L  + 
Sbjct: 92  KFREGLEKSRENFQNKLNDLLAMYRTVDEDFFEALEEMLIQADVGFNTVMDLVESLRMEA 151

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP------HVILVVGVNGVGKTTVI 128
             ++++      D+ E+I + ++ + +  +              VIL+VGVNGVGKTT I
Sbjct: 152 KRRNITE---TADLREVIVEKIVEIYEQEDDKLQEMNIQEDGLTVILMVGVNGVGKTTTI 208

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +    G KVMLAAGDTFR+ AI+QL++W DR   + +    GSD AA+ Y+A   
Sbjct: 209 GKLAHRYKGQGKKVMLAAGDTFRAGAIEQLQVWGDRVGVEVIKQSEGSDPAAVMYDAIGA 268

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ +  D+LI DTAGRL N + LM  + K+ +VL R  P APH VL  LDATTGQNAL Q
Sbjct: 269 AKNRGADILICDTAGRLQNKANLMTELEKVKKVLSRAVPGAPHEVLLALDATTGQNALVQ 328

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F  V   +G+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL+PF A+ +
Sbjct: 329 AKAFKEVTDVSGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGEKLDDLQPFDAESY 386


>gi|254303084|ref|ZP_04970442.1| cell division protein FtsY [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323276|gb|EDK88526.1| cell division protein FtsY [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 344

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 127/298 (42%), Positives = 185/298 (62%), Gaps = 7/298 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           ++LTK       KLK   T   S  ++DD + EELEDLL++SD+G+++   ++ +L  + 
Sbjct: 50  QRLTKSKEGFFSKLKNIFT---SKSKVDDSIYEELEDLLLQSDVGLSMTTNLINQLEKEV 106

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            A  V     +Y++   L+ + L+   SK +  D  ++ +VIL+VGVNGVGKTT IGKL+
Sbjct: 107 KANKVDNTDEVYEILKRLMSEFLLSQDSKIYLKD--NKINVILIVGVNGVGKTTTIGKLA 164

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            K    G KV+L AGDTFR+AA++QL+ WA R   D V    G+D A++ Y+   +A+A 
Sbjct: 165 LKYKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADPASVVYDTLSRAEAT 224

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D TTGQN L Q + F
Sbjct: 225 KADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAKEF 284

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           ++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL  F AKDF   I
Sbjct: 285 NSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLIEFNAKDFVEAI 342


>gi|260494667|ref|ZP_05814797.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           3_1_33]
 gi|260197829|gb|EEW95346.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           3_1_33]
          Length = 328

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 129/315 (40%), Positives = 195/315 (61%), Gaps = 13/315 (4%)

Query: 1   MSNQKVASESLSWIRKLTK---GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD 57
           +  +K  ++ ++  ++LTK   GF S   KLK   T   S  ++DD + EELEDLL++SD
Sbjct: 20  IDKEKEENQKVNISQRLTKSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSD 73

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVIL 115
           +G+ +   ++ +L  +  +  +     +Y+V  +L+ + L+   SK +  D  ++ +VIL
Sbjct: 74  VGLNMTTNLINQLEKEVKSNKIDNTEEVYEVLKKLMSEFLLSQDSKIYLKD--NKINVIL 131

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VGVNGVGKTT IGKL+ K    G KV+L AGDTFR+AA++QL+ WA R   D V    G
Sbjct: 132 IVGVNGVGKTTTIGKLALKYKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREG 191

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++ Y+   +A++ K DV+IIDTAGRLHN + LM  + K+  ++K+      +  L 
Sbjct: 192 ADPASVVYDTLSRAESTKADVVIIDTAGRLHNKTNLMRELEKINNIIKKKIGEQQYESLL 251

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+D TTGQN L Q + F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I
Sbjct: 252 VIDGTTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKI 311

Query: 296 NDLEPFVAKDFSAVI 310
            DL  F AKDF   I
Sbjct: 312 EDLIEFNAKDFVEAI 326


>gi|153806284|ref|ZP_01958952.1| hypothetical protein BACCAC_00540 [Bacteroides caccae ATCC 43185]
 gi|149130961|gb|EDM22167.1| hypothetical protein BACCAC_00540 [Bacteroides caccae ATCC 43185]
          Length = 319

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 122/297 (41%), Positives = 179/297 (60%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  KR 
Sbjct: 15  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A D  V+ Q + + + + I  +L   +      F+     +P+VI+VVGVNGVGKTT IG
Sbjct: 74  AADKYVNTQELNHILRDEIAALLTENNSDDVADFDVPIERKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A++AY+    A
Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAYDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   D++IIDTAGRLHN   LM  + K+  V+K++ P AP  VL VLD +TGQNA  Q 
Sbjct: 194 VANNADIVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPDEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F   +F
Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 310


>gi|27904538|ref|NP_777664.1| FtsY protei [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|31340085|sp|Q89B28|FTSY_BUCBP RecName: Full=Cell division protein ftsY homolog
 gi|27903935|gb|AAO26769.1| FtsY protei [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 397

 Score =  215 bits (547), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 115/271 (42%), Positives = 171/271 (63%), Gaps = 14/271 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-------KM 95
           + + +++E+ L+ SDIGV   +++V+ L+       VS Q  L +++ +I        K+
Sbjct: 123 NSLLDDIEEQLLVSDIGVRTTRELVDSLIK------VSTQHELKNLNLIIEILKSKMKKI 176

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  +  P N ++ +   VILVVGVNGVGKTT+IGKL+K     G  V+LAAGDTFR+AAI
Sbjct: 177 LNKVEGPLNINYKN-LFVILVVGVNGVGKTTLIGKLAKNYKKKGKSVILAAGDTFRAAAI 235

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           DQLK+W +  S   +  EIGSD A++ Y+A K A+ K +D+LIIDTAGRLHN + LM  +
Sbjct: 236 DQLKLWGEINSVSVITREIGSDPASVVYDAIKIAKLKCIDILIIDTAGRLHNKNNLMEEL 295

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K+ RV+ ++D       + VLDA  GQN+++QV++FH     TGL++TK+D TA+GG +
Sbjct: 296 KKIKRVIHKIDSTISQETMLVLDACIGQNSIKQVKIFHESLNVTGLVITKLDSTAKGGVI 355

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             I     IPV ++  GE   D++ F +  F
Sbjct: 356 FSIAQEFLIPVRYISFGEDFEDIQVFNSNIF 386


>gi|160882777|ref|ZP_02063780.1| hypothetical protein BACOVA_00738 [Bacteroides ovatus ATCC 8483]
 gi|237720683|ref|ZP_04551164.1| recognition particle-docking protein FtsY [Bacteroides sp. 2_2_4]
 gi|260170246|ref|ZP_05756658.1| recognition particle-docking protein FtsY [Bacteroides sp. D2]
 gi|299145601|ref|ZP_07038669.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           3_1_23]
 gi|315918609|ref|ZP_07914849.1| recognition particle-docking protein FtsY [Bacteroides sp. D2]
 gi|156111801|gb|EDO13546.1| hypothetical protein BACOVA_00738 [Bacteroides ovatus ATCC 8483]
 gi|229449518|gb|EEO55309.1| recognition particle-docking protein FtsY [Bacteroides sp. 2_2_4]
 gi|298516092|gb|EFI39973.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           3_1_23]
 gi|313692484|gb|EFS29319.1| recognition particle-docking protein FtsY [Bacteroides sp. D2]
          Length = 319

 Score =  214 bits (546), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 123/297 (41%), Positives = 179/297 (60%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  KR 
Sbjct: 15  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A D  V+ Q +   + + I  +L   +      F+   + +P+VI+VVGVNGVGKTT IG
Sbjct: 74  AADKYVNTQELNLILRDEIAALLTENNSGDVADFDVPIARKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A++AY+    A
Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAYDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP  VL VLD +TGQNA  Q 
Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPDEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F   +F
Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 310


>gi|87308020|ref|ZP_01090162.1| cell division protein FtsY [Blastopirellula marina DSM 3645]
 gi|87289102|gb|EAQ80994.1| cell division protein FtsY [Blastopirellula marina DSM 3645]
          Length = 328

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/297 (43%), Positives = 176/297 (59%), Gaps = 5/297 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS--RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +  +L +G   TS  L   I D+     R +DD    EL  +L+R+D+GV  A KI +++
Sbjct: 25  FFSRLKQGLVKTSRVLNTDIRDLFKQEGRLVDDEFLTELYAILVRTDMGVGPAGKIRDQV 84

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            T    + V +  VL  V +EL+  M  P   P  +  S  P V++VVGVNG GKTT I 
Sbjct: 85  KTDFRGRVVHLSEVLTTVKTELVALMQQP-ETPIQFAESG-PTVVMVVGVNGSGKTTSIA 142

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+  +   G  V+L AGDTFR+AA++QL IWADR   D V +E GSD A++A++A   A
Sbjct: 143 KLASYLKSQGKSVVLGAGDTFRAAAVEQLSIWADRLGVDIVKAEQGSDPASVAFKAVDFA 202

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV+I+DTAGRL   + LM  + K+ RV  +    APH VL VLDAT GQN + Q 
Sbjct: 203 LQNNKDVVILDTAGRLQTQTNLMNELDKIRRVAGKKIEAAPHEVLLVLDATAGQNGISQA 262

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F   A  TG+I+TK+DGTA+GG ++PI  T  +PV ++GVGE   D   F A+ F
Sbjct: 263 KGFSEAAQCTGIILTKLDGTAKGGVVVPIRQTFNLPVKYIGVGETPEDFALFNAEQF 319


>gi|298484172|ref|ZP_07002338.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           D22]
 gi|295084183|emb|CBK65706.1| signal recognition particle-docking protein FtsY [Bacteroides
           xylanisolvens XB1A]
 gi|298269676|gb|EFI11271.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           D22]
          Length = 319

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 123/297 (41%), Positives = 179/297 (60%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  KR 
Sbjct: 15  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A D  V+ Q +   + + I  +L   +      F+   + +P+VI+VVGVNGVGKTT IG
Sbjct: 74  AADKYVNTQELNLILRDEIAALLTENNSDDVADFDVPITRKPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A++AY+    A
Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAYDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP  VL VLD +TGQNA  Q 
Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPDEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F   +F
Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 310


>gi|256026607|ref|ZP_05440441.1| Signal recognition particle receptor FtsY [Fusobacterium sp. D11]
 gi|289764608|ref|ZP_06523986.1| signal recognition particle receptor FtsY [Fusobacterium sp. D11]
 gi|289716163|gb|EFD80175.1| signal recognition particle receptor FtsY [Fusobacterium sp. D11]
          Length = 328

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/315 (40%), Positives = 195/315 (61%), Gaps = 13/315 (4%)

Query: 1   MSNQKVASESLSWIRKLTK---GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD 57
           +  +K  ++ ++  ++LTK   GF S   KLK   T   S  ++DD + EELEDLL++SD
Sbjct: 20  IDKEKEENQKVNISQRLTKSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSD 73

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVIL 115
           +G+ +   ++ +L  +  +  +     +Y+V  +L+ + L+   SK +  D  ++ +VIL
Sbjct: 74  VGLNMTTNLINQLEKEVKSNKIDNTEEVYEVLKKLMSEFLLSQDSKIYLKD--NKINVIL 131

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VGVNGVGKTT IGKL+ K    G KV+L AGDTFR+AA++QL+ WA R   D V    G
Sbjct: 132 IVGVNGVGKTTTIGKLALKYKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREG 191

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++ Y+   +A++ K DV+IIDTAGRLHN + LM  + K+  ++K+      +  L 
Sbjct: 192 ADPASVVYDTLSRAESTKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQQYESLL 251

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+D TTGQN L Q + F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I
Sbjct: 252 VIDGTTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKI 311

Query: 296 NDLEPFVAKDFSAVI 310
            DL  F AKDF   I
Sbjct: 312 EDLIEFNAKDFVEAI 326


>gi|229496218|ref|ZP_04389938.1| signal recognition particle-docking protein FtsY [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316796|gb|EEN82709.1| signal recognition particle-docking protein FtsY [Porphyromonas
           endodontalis ATCC 35406]
          Length = 317

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/278 (42%), Positives = 169/278 (60%), Gaps = 5/278 (1%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLY-DVSELIHK 94
           ++DD V + LED+LI SD+GV    KI+    E +   +Y     +  +L  ++  L+ +
Sbjct: 39  KVDDEVLDNLEDVLISSDVGVDTTLKIIKRIEERVARDKYVSTAELNGILRSEIEALLTE 98

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
                   F      +P+VI+VVGVNGVGKTT IGKL+ +   AG KV++ A DTFR+AA
Sbjct: 99  SGTIDGDSFVLPTESKPYVIMVVGVNGVGKTTTIGKLAYQFKAAGHKVVIGAADTFRAAA 158

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           IDQL +WA+R     +  ++G+D A++AY+    A A+  DV++IDTAGRLHN   LM  
Sbjct: 159 IDQLSVWAERVDVPMIKQKMGADPASVAYDTVASAVAQDADVVLIDTAGRLHNKVGLMNE 218

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+ RV++++ P AP  VL VLD +TGQNA  Q   F A      L +TK+DGTA+GG 
Sbjct: 219 LTKIKRVMQKVVPDAPQEVLLVLDGSTGQNAFEQARQFTAATEVNALAVTKLDGTAKGGV 278

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +I I     IPV ++G+GE I DL+ F   +F A + G
Sbjct: 279 VIGISDQFNIPVKYIGLGEKIEDLQVFRKHEFVASLFG 316


>gi|188585992|ref|YP_001917537.1| signal recognition particle-docking protein FtsY [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350679|gb|ACB84949.1| signal recognition particle-docking protein FtsY [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 310

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/258 (47%), Positives = 162/258 (62%), Gaps = 8/258 (3%)

Query: 53  LIRSDIGVAVAQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           LI +D+GV    KIVE L   + +   KD  +V +VL D    +  MLM   K       
Sbjct: 43  LISADVGVDTTLKIVENLRQRIKEEKIKDSETVNQVLKDE---MKDMLMQKDKSLTPQ-E 98

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P V LVVGVNGVGKTT IGKL+ K    G KV+LAAGDTFR+AAIDQL+IW DR   D
Sbjct: 99  GTPKVSLVVGVNGVGKTTSIGKLAYKHKQEGKKVVLAAGDTFRAAAIDQLQIWGDRVGVD 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +  + G+D AA+ Y+A +  +A+  D LI DTAGRLHN   LM  + K+ R+++R    
Sbjct: 159 VIKHQEGADPAAVVYDAIQAGRARNADHLICDTAGRLHNKKNLMEELKKVSRIIEREIGT 218

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            PH V  VLDATTGQNAL Q ++F  V   +G+I+TK+DGTA+GG ++ +    +IP+ +
Sbjct: 219 PPHDVYMVLDATTGQNALSQAKLFSEVTPVSGIILTKLDGTAKGGIVLALANEMEIPIKY 278

Query: 289 LGVGEGINDLEPFVAKDF 306
           +GVGEG+ DL+ F    F
Sbjct: 279 IGVGEGMEDLQDFDPDQF 296


>gi|160880574|ref|YP_001559542.1| signal recognition particle-docking protein FtsY [Clostridium
           phytofermentans ISDg]
 gi|160429240|gb|ABX42803.1| signal recognition particle-docking protein FtsY [Clostridium
           phytofermentans ISDg]
          Length = 310

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/300 (43%), Positives = 183/300 (61%), Gaps = 4/300 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   +  +L  G A T   +   I  I + S  +DD   EELE+ LI +D+G+     I+
Sbjct: 3   EKKGFFSRLASGLAKTRDNVISSIESIFTGSSNIDDDFYEELEETLIMADLGINATTAII 62

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTT 126
           E L  K     +       D+  L+  M   +S   N ++F +   V+L++GVNGVGKTT
Sbjct: 63  ENLKNKVKENKIKEPSECRDL--LMASMREQMSLQENAYEFENHKSVVLLIGVNGVGKTT 120

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL+ ++ D+G KVM+AA DTFR+AAI+QL  WA+R   D +  + GSD AA+ Y+A 
Sbjct: 121 SVGKLAGQLKDSGKKVMVAAADTFRAAAIEQLTEWANRAHVDIIAQKEGSDPAAVIYDAV 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+++ VD+LI DTAGRLHN   LM  + K+ RV++R  P A    L VLD TTGQNAL
Sbjct: 181 TAAKSRNVDILICDTAGRLHNKKNLMEELRKIDRVIEREYPGAYRETLVVLDGTTGQNAL 240

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F+ VA  TG+++TK+DGTA+GG  I I    KIPV ++GVGE I+DL+ F   DF
Sbjct: 241 AQAKQFNEVADITGIVLTKLDGTAKGGIAIAIQSELKIPVKYIGVGEQIDDLQKFDPDDF 300


>gi|78187767|ref|YP_375810.1| cell division transporter substrate-binding protein FtsY
           [Chlorobium luteolum DSM 273]
 gi|78167669|gb|ABB24767.1| signal recognition particle-docking protein FtsY [Chlorobium
           luteolum DSM 273]
          Length = 317

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/308 (41%), Positives = 192/308 (62%), Gaps = 6/308 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE--EL 70
           + +LT+G   T   L+E +  +   +  +DD   EELE++L+ +D+GV +   IVE   L
Sbjct: 9   LSRLTEGLGKTRETLREKLAVVTKGKTEIDDEFLEELENILVGADVGVEMTLDIVEAITL 68

Query: 71  LTKR--YAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             KR  Y  +  + R+L D +S ++    +     F+   + RPHVIL+VGVNG GKTT 
Sbjct: 69  RAKRETYRSEEELNRMLLDEISGMLRDSSLEHPVEFDAPLAARPHVILIVGVNGAGKTTS 128

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           + KL+     AG KV++AA DTFR+AA +QL++WA+R     +    G+D A++ ++A  
Sbjct: 129 VAKLASNYERAGKKVVIAAADTFRAAAYEQLQVWAERAGVPLIGQGQGADPASVVFDAVS 188

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A+  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQNA++
Sbjct: 189 SAVARGTDVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQNAVQ 248

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F      TG+I+TK+DGTA+GG ++ I    K+PV ++GVGE I+DL+ F  + F 
Sbjct: 249 QAREFMKFVHVTGIIVTKLDGTAKGGIVLSISRELKLPVKYIGVGEKIDDLQLFDRRQFV 308

Query: 308 AVITGCLD 315
           A + G L+
Sbjct: 309 AALLGRLE 316


>gi|82703851|ref|YP_413417.1| signal recognition particle-docking protein FtsY [Nitrosospira
           multiformis ATCC 25196]
 gi|82411916|gb|ABB76025.1| signal recognition particle-docking protein FtsY [Nitrosospira
           multiformis ATCC 25196]
          Length = 328

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 183/304 (60%), Gaps = 10/304 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +W  ++ +G + T   L + ++ +     +D+ + EE+E +L+ +D GV+    ++EEL 
Sbjct: 20  NWGVRVRQGLSRTRNNLGKRLSGLFGGGAIDEDLYEEMETILLTADAGVSATTWLLEELR 79

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K     ++    L + + E +  +L PL++P +   +H P +I++ GVNG GKTT IGK
Sbjct: 80  RKVKRNGLTDASQLKEALQEALVDLLEPLAQPLDTS-AHHPFIIMLTGVNGAGKTTSIGK 138

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG----SDAAALAYEAF 186
           L+      G  V+LAAGDTFR+AA +QL  W +R     +  E       D AA+ ++A 
Sbjct: 139 LAHYYQLQGKSVLLAAGDTFRAAAREQLMAWGERNRVAVIAQESSDQQRGDPAAVIFDAV 198

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+ +D+++ DTAGRL     LM  I K+ RV+ + +P APH  L VLDA TGQNA+
Sbjct: 199 NAAKARGIDIVLADTAGRLATQLHLMEEIKKVKRVIAKTEPGAPHETLLVLDANTGQNAV 258

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFV 302
            QV+ F    G TGLI+TK+DGTA+GG L  I    +    +PV F+GVGEG++DL PFV
Sbjct: 259 NQVQAFDDALGLTGLIVTKLDGTAKGGVLAAIARQRQQKVPLPVRFIGVGEGLDDLRPFV 318

Query: 303 AKDF 306
           A++F
Sbjct: 319 AREF 322


>gi|332286877|ref|YP_004418788.1| cell division protein [Pusillimonas sp. T7-7]
 gi|330430830|gb|AEC22164.1| cell division protein [Pusillimonas sp. T7-7]
          Length = 378

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/309 (39%), Positives = 184/309 (59%), Gaps = 11/309 (3%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E  SW+ +L KG + T     + +  +    ++D+ + EELE  LI +D GV   +K++ 
Sbjct: 75  EKSSWLSRLKKGLSRTG----QNLGGLFVGVKVDESLFEELETALIMADAGVEATEKLLT 130

Query: 69  ELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  + R  +     +V   + +++   L PL K F    +  P V+++ GVNG GKTT 
Sbjct: 131 ALRARVRKERLEDAGQVKTALRDILADHLAPLEKSFPLGKTA-PLVVMIAGVNGAGKTTS 189

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+      G KV+LAAGDTFR+AA +QL  W  R +   +  + G D AA+A++A  
Sbjct: 190 IGKLANHFQAQGAKVLLAAGDTFRAAAREQLVEWGARNNVAVIAQD-GGDPAAVAFDAVN 248

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A++  V++IDTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNA+ 
Sbjct: 249 AGRAREAGVVMIDTAGRLPTQLHLMEELKKIKRVIGKADGAAPHEVLLVIDGNTGQNAIA 308

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVA 303
           Q+  F A    TGL++TK+DGTA+GG L  +    +    +PVY++GVGE ++DL+PFVA
Sbjct: 309 QIRAFDAALSLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGESLHDLQPFVA 368

Query: 304 KDFSAVITG 312
           K+F+A + G
Sbjct: 369 KEFAAALLG 377


>gi|296328238|ref|ZP_06870768.1| cell division protein FtsY [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154638|gb|EFG95425.1| cell division protein FtsY [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 333

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/311 (42%), Positives = 193/311 (62%), Gaps = 14/311 (4%)

Query: 3   NQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           NQKV  S+ L+   K  +GF S   KLK   T   S  ++DD + EELEDLL++SD+G+ 
Sbjct: 32  NQKVNISQRLT---KSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSDVGLN 82

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVILVVGV 119
           +   ++ +L  +  +  V     +Y++   L+ + L+   SK +  D  ++ +VIL+VGV
Sbjct: 83  MTTNLINQLEKEVKSNKVDNTEEVYEILKRLMSEFLLSQDSKIYLKD--NKINVILIVGV 140

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ K  + G KV+L AGDTFR+AA++QL+ WA R   D +    G+D A
Sbjct: 141 NGVGKTTTIGKLALKYKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIIKGREGADPA 200

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+   +A+A K D++IIDTAGRLHN + LM  + K+  ++K+      +  L V+D 
Sbjct: 201 SVVYDTLSRAEATKADIVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDG 260

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN L Q + F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL 
Sbjct: 261 TTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLI 320

Query: 300 PFVAKDFSAVI 310
            F AKDF   I
Sbjct: 321 EFNAKDFVEAI 331


>gi|19704409|ref|NP_603971.1| Signal recognition particle receptor FtsY [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|19714667|gb|AAL95270.1| Signal recognition particle receptor FtsY [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 333

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/311 (42%), Positives = 193/311 (62%), Gaps = 14/311 (4%)

Query: 3   NQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           NQKV  S+ L+   K  +GF S   KLK   T   S  ++DD + EELEDLL++SD+G+ 
Sbjct: 32  NQKVNISQRLT---KSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSDVGLN 82

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVILVVGV 119
           +   ++ +L  +  +  V     +Y++   L+ + L+   SK +  D  ++ +VIL+VGV
Sbjct: 83  MTTNLINQLEKEVKSNKVDNTEEVYEILKRLMSEFLLSQDSKIYLKD--NKINVILIVGV 140

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ K  + G KV+L AGDTFR+AA++QL+ WA R   D +    G+D A
Sbjct: 141 NGVGKTTTIGKLALKYKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIIKGREGADPA 200

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+   +A+A K D++IIDTAGRLHN + LM  + K+  ++K+      +  L V+D 
Sbjct: 201 SVVYDTLSRAEATKADIVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDG 260

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN L Q + F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL 
Sbjct: 261 TTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLI 320

Query: 300 PFVAKDFSAVI 310
            F AKDF   I
Sbjct: 321 EFNAKDFVEAI 331


>gi|228998623|ref|ZP_04158210.1| Cell division protein ftsY [Bacillus mycoides Rock3-17]
 gi|229006123|ref|ZP_04163811.1| Cell division protein ftsY [Bacillus mycoides Rock1-4]
 gi|228755199|gb|EEM04556.1| Cell division protein ftsY [Bacillus mycoides Rock1-4]
 gi|228761091|gb|EEM10050.1| Cell division protein ftsY [Bacillus mycoides Rock3-17]
          Length = 332

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 192/306 (62%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GVA 
Sbjct: 12  EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILISADVGVAT 71

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   R   +V  +I + L+ + K    DFS+  +       VIL
Sbjct: 72  VMELIDQLKEEVQRRNIQDPR---EVQAVISEKLVGIYKG-EEDFSNELNIQQDQLTVIL 127

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 128 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 187

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVD+L+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 188 SDPAAVMYDAVQAAKARKVDILLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 247

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 248 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 307

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 308 DDLQQF 313


>gi|256545171|ref|ZP_05472537.1| signal recognition particle-docking protein FtsY [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399212|gb|EEU12823.1| signal recognition particle-docking protein FtsY [Anaerococcus
           vaginalis ATCC 51170]
          Length = 371

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/303 (42%), Positives = 191/303 (63%), Gaps = 3/303 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
             E L +  KL+KG + T  +    + ++ ++  ++DD + +ELE++LI +DIG+    +
Sbjct: 63  TEEELGFFTKLSKGLSKTREQFSSKLKNLFTANVKIDDDLYDELEEILISADIGMKSTIE 122

Query: 66  IVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVG 123
           IV++L  +   K V +   +   + E++ K L   +   N + S  +  VILV+GVNGVG
Sbjct: 123 IVDQLKYEIKEKSVKNADEIFPLLKEIMEKKLDEKNLENNLNISKDKLTVILVIGVNGVG 182

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+  +   G KV LAA DTFR+AAI+QL +WA +++   +  + GSD +A+ +
Sbjct: 183 KTTTIGKLANNLKKDGYKVTLAAADTFRAAAIEQLDLWAKQSNTQMIAHKEGSDPSAVIF 242

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A K DVLI DTAGRLHN   LM  + K+ R +     +A    L VLDATTGQ
Sbjct: 243 DAIQAAKANKSDVLICDTAGRLHNKKNLMNELEKINRTISTHANNANRENLLVLDATTGQ 302

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q+  F  V   TGLI+TK+DGTA+GG + P+ V  ++PV ++GVGEGIN+LE F +
Sbjct: 303 NAISQLREFKNVCDITGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGINNLEKFDS 362

Query: 304 KDF 306
           K F
Sbjct: 363 KSF 365


>gi|116623313|ref|YP_825469.1| signal recognition particle-docking protein FtsY [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116226475|gb|ABJ85184.1| signal recognition particle-docking protein FtsY [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 316

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 180/303 (59%), Gaps = 15/303 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S + KL  G   T   L   + D +  ++ +D  + +ELE  LI +DIGVA   +I+E +
Sbjct: 14  SLLEKLKSGVQKTRAGLVTALEDALQGKKEIDADLLDELEFTLISADIGVATTSEILESI 73

Query: 71  LTKRYAKDVSVQR-VLYDVSEL---IHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVG 123
             +       V+R  L D  EL   I + L+ +   S+      +  P V+LVVGVNG G
Sbjct: 74  RQR-------VERHQLADAGELKGLIRERLLEILQASERAPARVAEPPAVVLVVGVNGAG 126

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ +  +    V+L A DTFR+AAI+QL+IW +RT    +  + GSD +A+ +
Sbjct: 127 KTTTIGKLAHRFKNEQRSVLLCAADTFRAAAIEQLEIWGERTGTQVIRQKPGSDPSAVLF 186

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+++KVD +I+DTAGRL     LM  + KM R  +++ P APH VL VLDATTGQ
Sbjct: 187 DAVTAAKSRKVDYVIVDTAGRLQTKEHLMLELEKMNRTARKVIPDAPHEVLLVLDATTGQ 246

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N L Q   F   +G TG+++TK+DGTA+GG ++ I     +P+ ++GVGE I DL PF  
Sbjct: 247 NGLEQARKFTGSSGVTGIVLTKLDGTAKGGIVVAIARELNLPIRYIGVGEKIEDLLPFDG 306

Query: 304 KDF 306
           + F
Sbjct: 307 EKF 309


>gi|312111706|ref|YP_003990022.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           Y4.1MC1]
 gi|311216807|gb|ADP75411.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           Y4.1MC1]
          Length = 330

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/310 (41%), Positives = 192/310 (61%), Gaps = 10/310 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+  ++ S   K  +G A T       + D+I+  R++D+   EELE++LI +D+GV  
Sbjct: 9   EKITKQTDSVTEKFKQGLAKTRDSFAGRVNDLIARYRKVDEEFFEELEEILIGADVGVTT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFSHRP-HVILV 116
             ++V+EL  K   K  ++Q    ++  +I + L+ +      KP   +       VIL 
Sbjct: 69  VMELVDEL--KMEVKRRNIQNP-QEMQAVISEKLVEIYRGGDDKPAELNIQEDGLTVILF 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ K+   G  VMLAAGDTFR+ AI+QL++W +R  A+ +    GS
Sbjct: 126 VGVNGVGKTTTIGKLAHKLKSEGKTVMLAAGDTFRAGAIEQLEVWGERVGAEVIKQTAGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A + A+A+  DVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V
Sbjct: 186 DPAAVIYDAIQAAKARGADVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVLLV 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++
Sbjct: 246 LDATTGQNAMSQAKTFKEATNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGEKVD 305

Query: 297 DLEPFVAKDF 306
           DL+PF  + +
Sbjct: 306 DLQPFDPEQY 315


>gi|229047534|ref|ZP_04193124.1| Cell division protein ftsY [Bacillus cereus AH676]
 gi|228723781|gb|EEL75136.1| Cell division protein ftsY [Bacillus cereus AH676]
          Length = 329

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 193/306 (63%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GVA 
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   +   +V  +I + L+ + K  + DFS+  +       V+L
Sbjct: 69  VMELIDQLKEEVQRRNIQNPK---EVQAVISEKLVGIYKG-DSDFSNEINMQEDQLTVVL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|30021935|ref|NP_833566.1| cell division protein ftsY [Bacillus cereus ATCC 14579]
 gi|229129123|ref|ZP_04258096.1| Cell division protein ftsY [Bacillus cereus BDRD-Cer4]
 gi|29897491|gb|AAP10767.1| Cell division protein ftsY [Bacillus cereus ATCC 14579]
 gi|228654360|gb|EEL10225.1| Cell division protein ftsY [Bacillus cereus BDRD-Cer4]
          Length = 329

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 193/306 (63%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GVA 
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   +   +V  +I + L+ + K  + DFS+  +       V+L
Sbjct: 69  VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEINMQEDQLTVVL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFRETTNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|237744886|ref|ZP_04575367.1| signal recognition particle receptor FtsY [Fusobacterium sp. 7_1]
 gi|229432115|gb|EEO42327.1| signal recognition particle receptor FtsY [Fusobacterium sp. 7_1]
          Length = 328

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/315 (40%), Positives = 195/315 (61%), Gaps = 13/315 (4%)

Query: 1   MSNQKVASESLSWIRKLTK---GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD 57
           +  +K  ++ ++  ++LTK   GF S   KLK   T   S  ++DD + EELEDLL++SD
Sbjct: 20  IDKEKEENQKVNISQRLTKSKEGFFS---KLKNIFT---SKSKVDDSIYEELEDLLLQSD 73

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL-SKPFNWDFSHRPHVIL 115
           +G+ +   ++ +L  +  +  +     +Y+V  +L+ + L+   SK +  D  ++ +VIL
Sbjct: 74  VGLNMTTNLINQLEKEVKSNKIDNTEEVYEVLKKLMSEFLLSQDSKIYLKD--NKINVIL 131

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VGVNGVGKTT IGKL+ K    G KV+L AGDTFR+AA++QL+ WA R   D V    G
Sbjct: 132 IVGVNGVGKTTTIGKLALKYKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREG 191

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++ Y+   +A++ K DV+IIDTAGRLHN + LM  + K+  ++K+      +  L 
Sbjct: 192 ADPASVVYDTLSRAESIKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLL 251

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+D TTGQN L Q + F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I
Sbjct: 252 VIDGTTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKI 311

Query: 296 NDLEPFVAKDFSAVI 310
            DL  F AKDF   I
Sbjct: 312 EDLIEFNAKDFVEAI 326


>gi|124268406|ref|YP_001022410.1| signal recognition particle-docking protein FtsY [Methylibium
           petroleiphilum PM1]
 gi|124261181|gb|ABM96175.1| signal recognition particle-docking protein FtsY [Methylibium
           petroleiphilum PM1]
          Length = 350

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/312 (42%), Positives = 192/312 (61%), Gaps = 24/312 (7%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            W+ +L  G   T      GIT + +  R+D+ + EELE  L+ +D G+   Q ++ +L 
Sbjct: 48  PWLDRLKSGLRRTG----SGITQVFTGTRIDEALYEELEAALLMADAGMPATQHLLADL- 102

Query: 72  TKRYAKD------VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            KR  K+       +V+ +L D    + ++L PL +P     + RP VI+V GVNG GKT
Sbjct: 103 -KRRVKEHKATDPAAVKLLLVDA---LAELLAPLQRPLVLGET-RPTVIMVAGVNGAGKT 157

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL++ ++D GLKV+LAA DTFR+AA +QL +WADR   + V  E G D AA++++A
Sbjct: 158 TSIGKLTRHLADGGLKVLLAAADTFRAAAKEQLAVWADRNRVEIVSQE-GGDPAAVSFDA 216

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K  QA+  DV++ DTAGRL   + LM  + K+ R + +    APH VL V+D  TGQNA
Sbjct: 217 VKAGQARGCDVVVADTAGRLPTQAHLMEELRKIKRTIGKAMDGAPHEVLLVVDGNTGQNA 276

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK-------IPVYFLGVGEGINDL 298
           L QV+ F AV G TGL++TK+DGTA+GG L  I +  +       +PVYF+GVGE + DL
Sbjct: 277 LAQVKAFDAVLGLTGLVVTKLDGTAKGGVLAAIALWSRERDGASPVPVYFIGVGEKLADL 336

Query: 299 EPFVAKDFSAVI 310
           E F A++FS  +
Sbjct: 337 ETFDAREFSQAL 348


>gi|125973443|ref|YP_001037353.1| signal recognition particle-docking protein FtsY [Clostridium
           thermocellum ATCC 27405]
 gi|256005339|ref|ZP_05430304.1| signal recognition particle-docking protein FtsY [Clostridium
           thermocellum DSM 2360]
 gi|281417643|ref|ZP_06248663.1| signal recognition particle-docking protein FtsY [Clostridium
           thermocellum JW20]
 gi|125713668|gb|ABN52160.1| signal recognition particle-docking protein FtsY [Clostridium
           thermocellum ATCC 27405]
 gi|255990658|gb|EEU00775.1| signal recognition particle-docking protein FtsY [Clostridium
           thermocellum DSM 2360]
 gi|281409045|gb|EFB39303.1| signal recognition particle-docking protein FtsY [Clostridium
           thermocellum JW20]
 gi|316940320|gb|ADU74354.1| signal recognition particle-docking protein FtsY [Clostridium
           thermocellum DSM 1313]
          Length = 302

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/252 (45%), Positives = 160/252 (63%), Gaps = 3/252 (1%)

Query: 56  SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           SD+G+  + KI+E L  + +  K     +V   + E + ++L         D +  P VI
Sbjct: 47  SDVGIDTSMKIIENLKNRVKETKTTDPAKVKELLKEELAQILSQGESDLKLDTT--PSVI 104

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           LVVGVNGVGKTT IGK++  +   G KV+LAAGDTFR+AAIDQL+IWA+R   + +    
Sbjct: 105 LVVGVNGVGKTTSIGKIANLLKSQGKKVILAAGDTFRAAAIDQLEIWANRVGVEIIKQAE 164

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD AA+ Y+A +  +A+K DVLI DTAGRLH    LM  + K+ R++ R  P     VL
Sbjct: 165 GSDPAAVIYDAIQAVKARKADVLICDTAGRLHTKKNLMEELKKVFRIVDRELPGVSREVL 224

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNA+ Q + F  V   TG+++TK+DGTA+GG +I +     IPV  +GVGE 
Sbjct: 225 LVLDATTGQNAISQAKTFSEVTDVTGIVLTKLDGTAKGGIIIAVASELNIPVKLIGVGEQ 284

Query: 295 INDLEPFVAKDF 306
           ++DL+ F A++F
Sbjct: 285 MDDLQRFNAREF 296


>gi|228992575|ref|ZP_04152502.1| Cell division protein ftsY [Bacillus pseudomycoides DSM 12442]
 gi|228767209|gb|EEM15845.1| Cell division protein ftsY [Bacillus pseudomycoides DSM 12442]
          Length = 329

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 192/306 (62%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GVA 
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   R   +V  +I + L+ + K    DFS+  +       VIL
Sbjct: 69  VMELIDQLKEEVQRRNIQDPR---EVQAVISEKLVGIYKG-EEDFSNELNIQQDQLTVIL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVD+L+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARKVDILLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|206971368|ref|ZP_03232319.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           AH1134]
 gi|218233848|ref|YP_002368648.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           B4264]
 gi|228922601|ref|ZP_04085901.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228954123|ref|ZP_04116152.1| Cell division protein ftsY [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960063|ref|ZP_04121727.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229081102|ref|ZP_04213612.1| Cell division protein ftsY [Bacillus cereus Rock4-2]
 gi|229111318|ref|ZP_04240871.1| Cell division protein ftsY [Bacillus cereus Rock1-15]
 gi|229146418|ref|ZP_04274789.1| Cell division protein ftsY [Bacillus cereus BDRD-ST24]
 gi|229152046|ref|ZP_04280241.1| Cell division protein ftsY [Bacillus cereus m1550]
 gi|229180123|ref|ZP_04307467.1| Cell division protein ftsY [Bacillus cereus 172560W]
 gi|229192016|ref|ZP_04318986.1| Cell division protein ftsY [Bacillus cereus ATCC 10876]
 gi|296504342|ref|YP_003666042.1| cell division protein FtsY [Bacillus thuringiensis BMB171]
 gi|206734140|gb|EDZ51311.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           AH1134]
 gi|218161805|gb|ACK61797.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           B4264]
 gi|228591567|gb|EEK49416.1| Cell division protein ftsY [Bacillus cereus ATCC 10876]
 gi|228603332|gb|EEK60809.1| Cell division protein ftsY [Bacillus cereus 172560W]
 gi|228631395|gb|EEK88029.1| Cell division protein ftsY [Bacillus cereus m1550]
 gi|228637051|gb|EEK93510.1| Cell division protein ftsY [Bacillus cereus BDRD-ST24]
 gi|228672094|gb|EEL27385.1| Cell division protein ftsY [Bacillus cereus Rock1-15]
 gi|228702146|gb|EEL54622.1| Cell division protein ftsY [Bacillus cereus Rock4-2]
 gi|228799579|gb|EEM46532.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805689|gb|EEM52279.1| Cell division protein ftsY [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228837030|gb|EEM82371.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|296325394|gb|ADH08322.1| cell division protein ftsY [Bacillus thuringiensis BMB171]
          Length = 329

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 193/306 (63%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GVA 
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   +   +V  +I + L+ + K  + DFS+  +       V+L
Sbjct: 69  VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEINMQEDQLTVVL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|319649602|ref|ZP_08003758.1| recognition particle-docking protein FtsY [Bacillus sp. 2_A_57_CT2]
 gi|317398764|gb|EFV79446.1| recognition particle-docking protein FtsY [Bacillus sp. 2_A_57_CT2]
          Length = 334

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/311 (41%), Positives = 190/311 (61%), Gaps = 12/311 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+  ++ S   K   G   T       + D++S  R++D+   EELE++LI +D+G   
Sbjct: 9   EKITKQTDSVTEKFKDGLTKTRDNFSNKVNDLVSRYRKVDEEFFEELEEILIGADVGFDT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVIL 115
             ++VEEL  +   K++   R   DV  +I + L+ +       S   N   S    VIL
Sbjct: 69  VMELVEELRREVKRKNIQDPR---DVQAVISEKLVEIYDSAGETSTELNIQ-SEGLTVIL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K  + G  V+LAAGDTFR+ AI+QL++W +R   D +    G
Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKNEGKNVLLAAGDTFRAGAIEQLEVWGERVGVDVIKQGAG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+++K D+LI DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQSAKSRKADILICDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNA+ Q + F      +G+++TK+DGTA+GG ++ I    +IPV F+G+GE +
Sbjct: 245 VLDATTGQNAMIQAKTFKEATDVSGIVLTKLDGTAKGGIVLAIRNELEIPVKFVGLGEKM 304

Query: 296 NDLEPFVAKDF 306
           +DL+ F A+ +
Sbjct: 305 DDLQEFNAEQY 315


>gi|222529161|ref|YP_002573043.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456008|gb|ACM60270.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 301

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 190/299 (63%), Gaps = 8/299 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +I +L +G + T     E +  ++ S +++DD + EELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFIDRLKEGLSKTKKNFTEKVESLLKSFKQIDDDLFEELEEVLVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           L  +     V  +R+L    V EL+ + ++ +    N      P +IL+VGVNGVGKTT 
Sbjct: 61  LKER-----VKKERILDPQVVKELLKEEMLNIINLENKLSEKYPLIILMVGVNGVGKTTS 115

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGK++  +   G KV++AA DTFR+AA +QL+IWA R   D +    GSD AA+ ++  +
Sbjct: 116 IGKIANLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGSDPAAVVFDGIQ 175

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQNAL 
Sbjct: 176 AMRARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEAAKETLLVIDATTGQNALN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q + F+     +G+++TK+DGTA+GG +I I    KIPV F+GVGE I+DL+ F AK+F
Sbjct: 236 QAKEFNQAVNISGIVLTKLDGTAKGGIVISICDELKIPVKFVGVGEKIDDLQQFNAKEF 294


>gi|260887878|ref|ZP_05899141.1| signal recognition particle-docking protein FtsY [Selenomonas
           sputigena ATCC 35185]
 gi|330838743|ref|YP_004413323.1| signal recognition particle-docking protein FtsY [Selenomonas
           sputigena ATCC 35185]
 gi|260862384|gb|EEX76884.1| signal recognition particle-docking protein FtsY [Selenomonas
           sputigena ATCC 35185]
 gi|329746507|gb|AEB99863.1| signal recognition particle-docking protein FtsY [Selenomonas
           sputigena ATCC 35185]
          Length = 307

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/262 (48%), Positives = 174/262 (66%), Gaps = 2/262 (0%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP 111
           LI SD+GV   ++++ ++      KD++    L   ++E I ++L   S       S  P
Sbjct: 44  LIMSDVGVKTTERLMADVRKGIKKKDINTPEDLKPFLAEKISEILSTGSDETRI-ASAGP 102

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            V+LV+GVNGVGKTT IGKL+    + G  VMLAA DTFR+AAIDQL+IW DRT    + 
Sbjct: 103 TVLLVIGVNGVGKTTTIGKLAAYYKEQGKSVMLAAADTFRAAAIDQLQIWGDRTGVPVIR 162

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            E GSD AA+A++A K A+A+ +DVLIIDTAGRLH  S LM  + K+ RV++R    APH
Sbjct: 163 HEEGSDPAAVAFDAVKAARARSIDVLIIDTAGRLHTKSNLMEELKKINRVIQREIAEAPH 222

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L VLDATTGQNA+ Q ++F   A  TG+++TK+DGTA+GG +I +     +PV ++GV
Sbjct: 223 ETLLVLDATTGQNAISQADLFQKAAAITGIVLTKLDGTAKGGVIIGLKSELSMPVKWIGV 282

Query: 292 GEGINDLEPFVAKDFSAVITGC 313
           GEG++DL PF+AKDF+  + G 
Sbjct: 283 GEGVDDLRPFIAKDFARALFGL 304


>gi|328957314|ref|YP_004374700.1| signal recognition particle [Carnobacterium sp. 17-4]
 gi|328673638|gb|AEB29684.1| signal recognition particle [Carnobacterium sp. 17-4]
          Length = 332

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 117/308 (37%), Positives = 181/308 (58%), Gaps = 16/308 (5%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E+     K  KG   T     + + ++ ++ R +D+   +ELE++LI +D+G     +I 
Sbjct: 18  ETTEVTEKYEKGLEKTRKTFSQRMNELFANFRTVDEDFFDELEEVLIGADVGFEATMEIT 77

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV---------ILVVG 118
           + L  +   K+      +  V  +I KM+    + +  + + +P V         ILVVG
Sbjct: 78  DALRQEVKLKNAKASNEVQQV--IIEKMV----EIYEKEDTEKPEVHINPDGLTVILVVG 131

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++      G KV+LAAGDTFR+ AI+QL +W +R   + V  + G D 
Sbjct: 132 VNGVGKTTTIGKMAHLYQQEGKKVLLAAGDTFRAGAIEQLHVWGERVGVEVVSGKAGGDP 191

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A K+A+ ++ D+L +DTAGRL N   LM  + KM R+++R  P  PH VL VLD
Sbjct: 192 AAVVFDAIKEAKQQQADILFVDTAGRLQNKVNLMNELEKMKRIIEREIPGGPHEVLLVLD 251

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL
Sbjct: 252 ATTGQNAMNQAKQFKQTTNVTGIVLTKLDGTAKGGIVLAIRKELDIPVKFVGLGESMDDL 311

Query: 299 EPFVAKDF 306
           + F   ++
Sbjct: 312 QLFDPNEY 319


>gi|310658886|ref|YP_003936607.1| signal recognition particle-docking protein ftsy [Clostridium
           sticklandii DSM 519]
 gi|308825664|emb|CBH21702.1| Signal recognition particle-docking protein FtsY [Clostridium
           sticklandii]
          Length = 413

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/256 (43%), Positives = 165/256 (64%), Gaps = 5/256 (1%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVI 114
           D+G     KIV+ L  ++  K  S+Q V  DV E +  ++  +      N     +P ++
Sbjct: 157 DVGFETTLKIVDML--RKNVKKKSIQDV-KDVREELKLIVEEILSGDDSNLKLEPKPAIL 213

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           ++VGVNGVGKTT IGK++ ++   G  V+LAAGDTFR+AA +QL++WADR   + +  + 
Sbjct: 214 VIVGVNGVGKTTSIGKIAMRLKSEGKSVLLAAGDTFRAAAAEQLEVWADRAGVELIKHQE 273

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD +A+ ++A   A+A+  DVLI DTAGRLHN   LM  + K+ R++ R  P A   VL
Sbjct: 274 GSDPSAVIFDAISGAKARNTDVLICDTAGRLHNKKNLMQELAKIFRIIDREYPEATKEVL 333

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DATTGQNA+ QV++F   A  TG+I+TK+DGTA+GG ++ I    ++P+  +GVGE 
Sbjct: 334 LVIDATTGQNAINQVKIFKEAAPLTGIILTKLDGTAKGGVVLSIKSEQQLPIKLIGVGEK 393

Query: 295 INDLEPFVAKDFSAVI 310
           I DL+ F AK+F+  +
Sbjct: 394 IEDLQDFNAKEFAKAL 409


>gi|307565268|ref|ZP_07627761.1| signal recognition particle-docking protein FtsY [Prevotella amnii
           CRIS 21A-A]
 gi|307345937|gb|EFN91281.1| signal recognition particle-docking protein FtsY [Prevotella amnii
           CRIS 21A-A]
          Length = 317

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/298 (40%), Positives = 183/298 (61%), Gaps = 10/298 (3%)

Query: 17  LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T   +   +   ++ +  +DD V + LE++L+ SD+GV    KI+  +  KR 
Sbjct: 15  LDKGLEKTKANVFSKLARAVAGKSTVDDDVLDNLEEILVTSDVGVDTTIKIIHRI-EKRV 73

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHVILVVGVNGVGKTTVI 128
           A+D  V     + + L  ++   L++    D ++       +P+VILVVGVNGVGKTT I
Sbjct: 74  ARDKYVSTSELN-AILKSEIANLLAENNTGDIANSEMLVGKKPYVILVVGVNGVGKTTTI 132

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +   AG KV L A DTFR+AA++Q+ IW  R     +  ++G+D A++A++  + 
Sbjct: 133 GKLAYQFKQAGKKVYLGAADTFRAAAVEQIDIWGKRVGVPVIKQQMGADPASVAFDTLQS 192

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A   DV++IDTAGRLHN   LM  + K+  V+K++ P APH V+ VLD +TGQNA  Q
Sbjct: 193 AKANDADVVLIDTAGRLHNKVNLMNELKKIKEVMKKVIPDAPHEVMLVLDGSTGQNAFEQ 252

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F AV   + L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F  ++F
Sbjct: 253 AKQFAAVTQISSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFNKEEF 310


>gi|319795658|ref|YP_004157298.1| signal recognition particle-docking protein ftsy [Variovorax
           paradoxus EPS]
 gi|315598121|gb|ADU39187.1| signal recognition particle-docking protein FtsY [Variovorax
           paradoxus EPS]
          Length = 435

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/307 (42%), Positives = 188/307 (61%), Gaps = 11/307 (3%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E   W  KL  G   T      GI  +  + ++DD + EELE  L+ +D GV   + +++
Sbjct: 137 ERKGWFDKLKTGLRKTG----TGIQAVFVNAQIDDALYEELESALLMADTGVKATEYLLD 192

Query: 69  EL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +L   + ++ A D +  +VL  ++E I  +L PL KP        P VI+V GVNG GKT
Sbjct: 193 DLKVRVKRQMATDAAQVKVL--LAEAIADLLRPLEKPLVIG-QFTPTVIMVAGVNGAGKT 249

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K ++  G  V+LAA DTFR+AA +QL +WADR + + V +E G D +A++++A
Sbjct: 250 TSIGKLTKHLATEGASVLLAAADTFRAAAREQLLVWADRNTVEIVSNE-GGDPSAVSFDA 308

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
               +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNA
Sbjct: 309 VNAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRVVTKADASAPHEVLLVIDGNTGQNA 368

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DLE F A++
Sbjct: 369 LAQVKAFDETLGLTGLIVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLETFNARE 428

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 429 FAQALLG 435


>gi|229019043|ref|ZP_04175883.1| Cell division protein ftsY [Bacillus cereus AH1273]
 gi|229025288|ref|ZP_04181708.1| Cell division protein ftsY [Bacillus cereus AH1272]
 gi|229162783|ref|ZP_04290740.1| Cell division protein ftsY [Bacillus cereus R309803]
 gi|228620665|gb|EEK77534.1| Cell division protein ftsY [Bacillus cereus R309803]
 gi|228736041|gb|EEL86616.1| Cell division protein ftsY [Bacillus cereus AH1272]
 gi|228742245|gb|EEL92405.1| Cell division protein ftsY [Bacillus cereus AH1273]
          Length = 332

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV+ 
Sbjct: 12  EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKIDEDFFEELEEILISADVGVST 71

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   +   +V  +I + L+ + K  + DFS+  +       V+L
Sbjct: 72  VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEVNIQEDQLTVVL 127

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 128 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 187

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 188 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 247

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 248 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 307

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 308 DDLQQF 313


>gi|317121792|ref|YP_004101795.1| signal recognition particle-docking protein FtsY [Thermaerobacter
           marianensis DSM 12885]
 gi|315591772|gb|ADU51068.1| signal recognition particle-docking protein FtsY [Thermaerobacter
           marianensis DSM 12885]
          Length = 311

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/293 (44%), Positives = 184/293 (62%), Gaps = 2/293 (0%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           KL  G A T  +L   I  ++    LD+ + E+LE +LI +D+GVA  Q+++E L  +  
Sbjct: 5   KLKAGLARTREQLAGRIRAVVQGAALDESLYEDLEAVLITADVGVATTQRLLERLRERVR 64

Query: 76  AKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSK 133
           A+ V   + V   ++E +  +L  ++ P         P V+LVVGVNG GKTT  GKL+ 
Sbjct: 65  AEGVRDAEAVPQLLAEEMRAVLEAVAAPPATPAGRDEPLVVLVVGVNGSGKTTTTGKLAS 124

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +    G +V++ A DTFR+AAIDQL+ W  R+ A+ V    G+D AA+A++A + A+A+ 
Sbjct: 125 RYRKEGWRVVVGAADTFRAAAIDQLERWCQRSGAELVRQHPGADPAAVAFDALQAARARG 184

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            +VL++DTAGRLH    LM  + K +RVL+RLDP APH VL VLDATTGQNAL Q   F 
Sbjct: 185 ANVLLVDTAGRLHTRVNLMEELRKTVRVLQRLDPTAPHEVLLVLDATTGQNALAQARHFT 244

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              G TG+++TK+DGTARGG ++ I     +PV ++G GEG +DL PF   +F
Sbjct: 245 DAVGVTGIVLTKLDGTARGGMVVAIADQLGLPVKWVGTGEGADDLAPFDPAEF 297


>gi|167745645|ref|ZP_02417772.1| hypothetical protein ANACAC_00337 [Anaerostipes caccae DSM 14662]
 gi|167654957|gb|EDR99086.1| hypothetical protein ANACAC_00337 [Anaerostipes caccae DSM 14662]
          Length = 316

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/313 (39%), Positives = 176/313 (56%), Gaps = 5/313 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
           +E   +  +L  G   T   +  G   I      +DD   EELE+++I SD+G+     I
Sbjct: 8   AEKKGFFSRLAAGLTKTRDNIASGFDSIFKGFSSIDDDFYEELEEIMIMSDMGIDTTMSI 67

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E L  K   + +        V     K  M L +   +DF  +  V+LV+GVNGVGKTT
Sbjct: 68  IENLKKKVKEEKIKEPEECRQVLIDSIKEQMKLGEE-AYDFKDKKSVVLVIGVNGVGKTT 126

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GK++  +   G KVM+AA DTFR+ AI+QLK WA R   D +    G+D AA+ Y+A 
Sbjct: 127 SVGKMASLLKGEGKKVMMAAADTFRAGAIEQLKEWAGRAGVDIISQAEGADPAAVVYDAV 186

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+ VDVL+ DTAGRLHN   LM  + K+ R+++R  P A    L VLD TTGQNAL
Sbjct: 187 SAAKARNVDVLLCDTAGRLHNKKNLMDELKKINRIVEREYPEAYKETLIVLDGTTGQNAL 246

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F      +G+I+TK+DGTA+GG  I I     IPV ++G+GE ++DL+PF   D 
Sbjct: 247 AQAKQFKEATDISGIILTKLDGTAKGGIAIAIQAELGIPVKYIGIGEQVDDLQPF---DP 303

Query: 307 SAVITGCLDYGEE 319
              +    D G+E
Sbjct: 304 DMFVNALFDRGDE 316


>gi|116333588|ref|YP_795115.1| Signal recognition particle GTPase [Lactobacillus brevis ATCC 367]
 gi|116098935|gb|ABJ64084.1| signal recognition particle-docking protein FtsY [Lactobacillus
           brevis ATCC 367]
          Length = 487

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/295 (40%), Positives = 178/295 (60%), Gaps = 9/295 (3%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   T     + +  ++++ R +D+   ++LE+ LI +D+G  +A K+ +EL  +   +
Sbjct: 178 KGLEKTRTTFGQRLNALLANFRHVDESFFDDLEETLIGADVGFDMAVKLSDELRDEVKLQ 237

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFS------HRPHVILVVGVNGVGKTTVIGKL 131
           +    + + +V  ++ K++       N + +        P VIL VGVNGVGKTT IGK+
Sbjct: 238 NAKKSQDVQNV--VVEKLVEIYEAAGNHETTAINMAETGPTVILFVGVNGVGKTTTIGKM 295

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +   AG KV+LAA DTFR+ A +QL +WA R   D V  +  SD AA+ ++A ++A+ 
Sbjct: 296 ANRYHQAGKKVLLAAADTFRAGATEQLDVWAKRADVDIVTGKPQSDPAAVVFDAVQKAKQ 355

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D+L +DTAGRL N   LM  + KM R++ R  P APH VL VLDATTGQNAL Q ++
Sbjct: 356 DDYDILFVDTAGRLQNKVNLMNELEKMKRIITREIPSAPHEVLLVLDATTGQNALTQAKL 415

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F      TG+++TK+DGTARGG ++ I     +PV F+G+GE I+DL PF   +F
Sbjct: 416 FKESTAVTGIVLTKLDGTARGGIVLAIRNELHVPVKFIGLGEQISDLRPFDPNEF 470


>gi|163941585|ref|YP_001646469.1| signal recognition particle-docking protein FtsY [Bacillus
           weihenstephanensis KBAB4]
 gi|163863782|gb|ABY44841.1| signal recognition particle-docking protein FtsY [Bacillus
           weihenstephanensis KBAB4]
          Length = 329

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV+ 
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKIDEDFFEELEEILISADVGVST 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   +   +V  +I + L+ + K  + DFS+  +       V+L
Sbjct: 69  VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEVNIQEDQLTVVL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMNELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|229061450|ref|ZP_04198795.1| Cell division protein ftsY [Bacillus cereus AH603]
 gi|229134655|ref|ZP_04263464.1| Cell division protein ftsY [Bacillus cereus BDRD-ST196]
 gi|229168586|ref|ZP_04296309.1| Cell division protein ftsY [Bacillus cereus AH621]
 gi|228614992|gb|EEK72094.1| Cell division protein ftsY [Bacillus cereus AH621]
 gi|228648701|gb|EEL04727.1| Cell division protein ftsY [Bacillus cereus BDRD-ST196]
 gi|228717873|gb|EEL69521.1| Cell division protein ftsY [Bacillus cereus AH603]
          Length = 332

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV+ 
Sbjct: 12  EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKIDEDFFEELEEILISADVGVST 71

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   +   +V  +I + L+ + K  + DFS+  +       V+L
Sbjct: 72  VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEVNIQEDQLTVVL 127

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 128 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 187

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 188 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMNELEKVKRVIEREVPGAPHEVLL 247

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 248 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 307

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 308 DDLQQF 313


>gi|320353172|ref|YP_004194511.1| signal recognition particle-docking protein FtsY [Desulfobulbus
           propionicus DSM 2032]
 gi|320121674|gb|ADW17220.1| signal recognition particle-docking protein FtsY [Desulfobulbus
           propionicus DSM 2032]
          Length = 592

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 113/282 (40%), Positives = 175/282 (62%), Gaps = 20/282 (7%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE---------ELLTKRYAKDVSVQRVL- 85
           +  + +D  + E+LE++LI +D+GVA   ++++         +L   +  K +   ++L 
Sbjct: 309 LGKKEIDQDLFEQLEEILITADLGVATTLELIDGARKKVKRDQLSDPQALKAIIRDQILA 368

Query: 86  -YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
             + SE   +++MP   PF         VI+VVGVNGVGKTT IGK++ K   AG  V+L
Sbjct: 369 YIEASEQPAELVMPEEGPF---------VIMVVGVNGVGKTTTIGKIAAKFVRAGQSVLL 419

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            AGDTFR+AAI+QL+IW +R   + +  + G+D +++ ++  +   +   DV++IDTAGR
Sbjct: 420 VAGDTFRAAAINQLRIWGERVGVEVIAQKPGADPSSVVFDGLEYGTSHNYDVILIDTAGR 479

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LH +  LM  + K+ RV+ +  P APH V+ VLDATTGQN + Q ++FH   G TGL +T
Sbjct: 480 LHTSVNLMEELKKIKRVIGKKLPGAPHEVMLVLDATTGQNGISQAKLFHEAVGVTGLTLT 539

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           K+DGTA+GG +  +    K PV F+G+GE I+DL  F A++F
Sbjct: 540 KLDGTAKGGIVANVCRETKTPVRFIGIGEQIDDLRDFDAREF 581


>gi|255693888|ref|ZP_05417563.1| signal recognition particle-docking protein FtsY [Bacteroides
           finegoldii DSM 17565]
 gi|260620293|gb|EEX43164.1| signal recognition particle-docking protein FtsY [Bacteroides
           finegoldii DSM 17565]
          Length = 280

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 116/272 (42%), Positives = 170/272 (62%), Gaps = 7/272 (2%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMP 98
           +DD V + LE++LI SD+GV     I++ +  KR A+D  V+ Q + + + + I  +L  
Sbjct: 1   MDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRAAEDKYVNTQELNHILRDEIAALLTE 59

Query: 99  LSK----PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            +      F+     +P+VI+VVGVNGVGKTT IGKL+ +   AG  V L A DTFR+AA
Sbjct: 60  NNSGDIADFDVAIDKKPYVIMVVGVNGVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAA 119

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           ++QL IW +R     +  ++G+D A++AY+    A A   D++IIDTAGRLHN   LM  
Sbjct: 120 VEQLMIWGERVGVPVIKQKMGADPASVAYDTLSSAVANNADIVIIDTAGRLHNKVGLMNE 179

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+  V++++ P AP+ VL VLD +TGQNA  Q + F      T + +TK+DGTA+GG 
Sbjct: 180 LTKIKNVMRKVVPDAPNEVLLVLDGSTGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGV 239

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +I I    KIPV ++G+GEGI DL+ F   +F
Sbjct: 240 VIGISDQFKIPVKYIGLGEGIEDLQVFRKNEF 271


>gi|229071345|ref|ZP_04204568.1| Cell division protein ftsY [Bacillus cereus F65185]
 gi|228711799|gb|EEL63751.1| Cell division protein ftsY [Bacillus cereus F65185]
          Length = 329

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 193/306 (63%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GVA 
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   +   +V  +I + L+ + K  + DFS+  +       V+L
Sbjct: 69  VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEINMQGDQLTVVL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|295100363|emb|CBK97908.1| signal recognition particle-docking protein FtsY [Faecalibacterium
           prausnitzii L2-6]
          Length = 313

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/292 (41%), Positives = 176/292 (60%), Gaps = 4/292 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           K+  G   T       I + ++  ++DD + +ELE+ LI +D+G  VA K+V+ L  +  
Sbjct: 13  KMKDGLEKTRTGFWGNILNTLTGSKIDDDLYDELEEQLILADVGGDVAMKLVDALRDRVQ 72

Query: 76  AKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +       D + ++I   + P ++         P V+LV+GVNGVGKTT I KL+  
Sbjct: 73  EKGLKTGEQAADALRDIIADEMRPETE---MALDGHPAVLLVIGVNGVGKTTSIAKLADY 129

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
            +  G KVMLAAGDTFR+AA +QL+IWA R     V +  G+D AA+ ++  K A A+  
Sbjct: 130 YTRQGKKVMLAAGDTFRAAASEQLEIWAGRAGVPIVKAGEGADPAAVIFDTVKSATARGY 189

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I DTAGRLHN S LM+ + K+ R +++  P A    L VLDA TGQNA+ Q + F  
Sbjct: 190 DMVIADTAGRLHNKSNLMSELSKISRSVRKAAPEASLETLLVLDAITGQNAISQAKEFCK 249

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            A  TG+I+TK+DGTARGG ++ +     +PV F+GVGEGI+DL PF  + F
Sbjct: 250 AADATGIILTKLDGTARGGCVVAVKQRLGLPVRFIGVGEGIDDLIPFTPEGF 301


>gi|317472752|ref|ZP_07932065.1| signal recognition particle-docking protein FtsY [Anaerostipes sp.
           3_2_56FAA]
 gi|316899778|gb|EFV21779.1| signal recognition particle-docking protein FtsY [Anaerostipes sp.
           3_2_56FAA]
          Length = 310

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/313 (39%), Positives = 176/313 (56%), Gaps = 5/313 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
           +E   +  +L  G   T   +  G   I      +DD   EELE+++I SD+G+     I
Sbjct: 2   AEKKGFFSRLAAGLTKTRDNIASGFDSIFKGFSSIDDDFYEELEEIMIMSDMGIDTTMSI 61

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E L  K   + +        V     K  M L +   +DF  +  V+LV+GVNGVGKTT
Sbjct: 62  IENLKKKVKEEKIKEPEECRQVLIDSIKEQMKLGEE-AYDFKDKKSVVLVIGVNGVGKTT 120

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GK++  +   G KVM+AA DTFR+ AI+QLK WA R   D +    G+D AA+ Y+A 
Sbjct: 121 SVGKMASLLKGEGKKVMMAAADTFRAGAIEQLKEWAGRAGVDIISQAEGADPAAVVYDAV 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+ VDVL+ DTAGRLHN   LM  + K+ R+++R  P A    L VLD TTGQNAL
Sbjct: 181 SAAKARNVDVLLCDTAGRLHNKKNLMDELKKINRIVEREYPEAYKETLIVLDGTTGQNAL 240

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F      +G+I+TK+DGTA+GG  I I     IPV ++G+GE ++DL+PF   D 
Sbjct: 241 AQAKQFKEATDISGIILTKLDGTAKGGIAIAIQAELGIPVKYIGIGEQVDDLQPF---DP 297

Query: 307 SAVITGCLDYGEE 319
              +    D G+E
Sbjct: 298 DMFVNALFDRGDE 310


>gi|284051088|ref|ZP_06381298.1| cell division protein [Arthrospira platensis str. Paraca]
          Length = 399

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/318 (35%), Positives = 191/318 (60%), Gaps = 12/318 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++VA E ++W++KL KG   T   L   +  I+    L+    EE+E LL+++D+GV   
Sbjct: 85  EEVAVEEITWLQKLWKGLGRTRRNLLNQLKAIVGQGPLNQAAVEEIEALLLQADVGVEAT 144

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPHVILV 116
             I+E L  +     +  +  +  + +L+  +L    KP+   +S        + ++ L+
Sbjct: 145 DVIIEALQNRLREDALPPEDAIAYLKQLLRDLL---EKPYQNGYSPTFAPEKEQLNIWLI 201

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IG 175
            GVNG GKTT IGK++     +  + ++AAGDTFR+AA++Q+K+W +R+  + + +    
Sbjct: 202 TGVNGAGKTTTIGKIAHIAQKSDYRSLIAAGDTFRAAAVEQVKVWGERSGVEVIANPGKN 261

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D AA+ Y+A   A++++ ++LIIDTAGRL N   LM  + K+ RV+ +  P A    L 
Sbjct: 262 TDPAAVVYDAIAAAKSRQTELLIIDTAGRLQNKKNLMEELNKIRRVIDKQAPDAKVESLL 321

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD+T GQN LRQ ++F  VA  +G+++TK+DGTA+GG  + +V    +P+ F+GVGE I
Sbjct: 322 VLDSTLGQNGLRQAQVFAEVAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGVGESI 381

Query: 296 NDLEPFVAKDF-SAVITG 312
            DL PF + +F  A+++G
Sbjct: 382 EDLRPFSSYEFIEALLSG 399


>gi|52141632|ref|YP_085188.1| recognition particle-docking protein [Bacillus cereus E33L]
 gi|118479069|ref|YP_896220.1| signal recognition particle-docking protein FtsY [Bacillus
           thuringiensis str. Al Hakam]
 gi|196042326|ref|ZP_03109602.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           NVH0597-99]
 gi|225865828|ref|YP_002751206.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           03BB102]
 gi|228916484|ref|ZP_04080050.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229186087|ref|ZP_04313256.1| Cell division protein ftsY [Bacillus cereus BGSC 6E1]
 gi|301055337|ref|YP_003793548.1| recognition particle-docking protein [Bacillus anthracis CI]
 gi|51975101|gb|AAU16651.1| recognition particle-docking protein [Bacillus cereus E33L]
 gi|118418294|gb|ABK86713.1| signal recognition particle-docking protein FtsY [Bacillus
           thuringiensis str. Al Hakam]
 gi|196026848|gb|EDX65479.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           NVH0597-99]
 gi|225786630|gb|ACO26847.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           03BB102]
 gi|228597263|gb|EEK54914.1| Cell division protein ftsY [Bacillus cereus BGSC 6E1]
 gi|228843063|gb|EEM88145.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300377506|gb|ADK06410.1| recognition particle-docking protein [Bacillus cereus biovar
           anthracis str. CI]
          Length = 329

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 121/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV+ 
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVST 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   R   +V  +I + L+ + K  + DF++  +       V+L
Sbjct: 69  VMELIDQLKEEVQRRNIQDPR---EVQAVISEKLIEIYKG-DSDFTNEVNMQKDGLTVVL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|332685825|ref|YP_004455599.1| signal recognition particle receptor protein FtsY [Melissococcus
           plutonius ATCC 35311]
 gi|332369834|dbj|BAK20790.1| signal recognition particle receptor protein FtsY (alpha subunit)
           (TC 3.A.5.1.1) [Melissococcus plutonius ATCC 35311]
          Length = 460

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/300 (42%), Positives = 185/300 (61%), Gaps = 9/300 (3%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI + L  +
Sbjct: 151 KKYEKGLTKTRKTFSQRLNELFANFRSVDEDFFEELEETLIGADVGFETSLKITDSL--R 208

Query: 74  RYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTV 127
           +  K  +V++     + +I KM+ +   +  N D S      +  V+L VGVNGVGKTT 
Sbjct: 209 QEVKLRNVKKPAEVQNTIIEKMVDLYEEEGINEDNSLNIQTDQLTVMLFVGVNGVGKTTS 268

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+      G KV++AA DTFR+ AIDQL +W +R +   +  + G D AA+ Y++ K
Sbjct: 269 IGKLAYSYKQQGKKVVMAAADTFRAGAIDQLIVWGERANVKVIHGKAGGDPAAVVYDSIK 328

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ ++ D+L+IDTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ 
Sbjct: 329 YAKEEQADILLIDTAGRLQNKVNLMNELEKIKRVIQREIPEAPHEVLLVIDATTGQNAMS 388

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QV+ F      TGLI+TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF   DF+
Sbjct: 389 QVKQFKETTDVTGLILTKLDGTAKGGIIIAIRNELHLPVKLVGLGEGINDLEPFSTNDFA 448


>gi|297584010|ref|YP_003699790.1| signal recognition particle-docking protein FtsY [Bacillus
           selenitireducens MLS10]
 gi|297142467|gb|ADH99224.1| signal recognition particle-docking protein FtsY [Bacillus
           selenitireducens MLS10]
          Length = 336

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 126/307 (41%), Positives = 189/307 (61%), Gaps = 4/307 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+++++ S   K   G + T       + D++   R +D+   EELE++LI +D+GV  
Sbjct: 9   EKISTQTDSVTDKFRDGLSKTRDSFVGAMNDLVKDFREIDEDFFEELEEILIGADVGVHT 68

Query: 63  AQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGV 119
             ++VEEL  +   +++   + +   +SE + +ML         N        VIL VGV
Sbjct: 69  VMELVEELKDEARTRNIKHAEDIRPVISEKLAEMLQKSENESKLNMQPEGELTVILFVGV 128

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +  + G KV++AAGDTFR+ AI+QL++W +R+  D +  + GSD A
Sbjct: 129 NGVGKTTSIGKLAHQFKEDGKKVVMAAGDTFRAGAIEQLEVWGERSGVDVIKQQAGSDPA 188

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A + A++KK DVL+ DTAGRL N   LM  + K+ RVL R  P APH VL VLDA
Sbjct: 189 AVMYDAIQSAKSKKADVLLCDTAGRLQNKVNLMNELEKVKRVLAREIPSAPHEVLLVLDA 248

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F      +G+++TK+DGTA+GG ++ I     IPV  +G+GE I+DL 
Sbjct: 249 TTGQNAMSQAKAFGQATDVSGIVLTKLDGTAKGGIVLAIRNELDIPVKLVGLGEKIDDLH 308

Query: 300 PFVAKDF 306
            F A+ +
Sbjct: 309 EFRAEQY 315


>gi|256828204|ref|YP_003156932.1| signal recognition particle-docking protein FtsY [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577380|gb|ACU88516.1| signal recognition particle-docking protein FtsY [Desulfomicrobium
           baculatum DSM 4028]
          Length = 524

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 119/299 (39%), Positives = 182/299 (60%), Gaps = 9/299 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73
           KL+ G   T  +L   I  +++ +   DD   EELE++L+ +D+GV   Q++ + L  K 
Sbjct: 229 KLSAGLGKTREQLTMRIDQLLAMTGNYDDAFWEELEEILLMADVGVNATQELSKRLRPKL 288

Query: 74  RYA--KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           R A  +D +  + L    EL    + P +       S  P V+L++GVNG GKTT I KL
Sbjct: 289 RQAGERDAATFKTLMK-EELASVFIEPKTP----KVSQPPEVVLMIGVNGAGKTTTIAKL 343

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KV++AAGDTFR+AAI+QL++W+ R  A F     GSD AA+A+EA + A  
Sbjct: 344 AHRAQMQGRKVLVAAGDTFRAAAIEQLQVWSKRVGAGFYAKAHGSDPAAVAFEAVEYAMK 403

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++ +DTAGRL     LM  + K+ RVL +    APH  + VLD+TTGQNAL QV++
Sbjct: 404 EGYDLVFVDTAGRLQTKHNLMEELKKINRVLGKKLEGAPHRTILVLDSTTGQNALSQVKL 463

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           F   +    +++TK+DGTA+GG ++ I +  KIP+ F+G+GE + DL PF  ++F++ +
Sbjct: 464 FSQASPVDEIVLTKLDGTAKGGIIVAIALEFKIPISFVGLGEKMEDLRPFSGQEFASAL 522


>gi|293607597|ref|ZP_06689931.1| cell division protein FtsY [Achromobacter piechaudii ATCC 43553]
 gi|292814030|gb|EFF73177.1| cell division protein FtsY [Achromobacter piechaudii ATCC 43553]
          Length = 353

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 181/304 (59%), Gaps = 11/304 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L +G + T     + I  I    ++D+ + EELE  LI +D G+   +K++  L 
Sbjct: 53  SWLSRLKQGLSRTG----QSIGGIFVGVKVDENLFEELESALIMADAGLEATEKLLTALR 108

Query: 72  TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +    +V   + +L+   L PL + FN   S +P V+++ GVNG GKTT IGK
Sbjct: 109 ARVKKERIEDPAKVKTALRQLLADHLRPLERGFNLT-SAKPLVVMIAGVNGAGKTTSIGK 167

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G  V+LAAGDTFR+AA +QL  W  R +   V S+ G D AA+A++A    +
Sbjct: 168 LAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVS-VISQDGGDPAAVAFDAVNAGR 226

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ + V+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL Q+ 
Sbjct: 227 ARGMGVVMVDTAGRLPTQLHLMEELKKIRRVIGKADASAPHEVLLVVDGNTGQNALAQIR 286

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAKDF 306
            F A    TGL++TK+DGTA+GG L  +    +    IPVY++GVGE + DL+PFVA +F
Sbjct: 287 AFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGESLEDLQPFVADEF 346

Query: 307 SAVI 310
           +  +
Sbjct: 347 AGAL 350


>gi|293373983|ref|ZP_06620324.1| signal recognition particle-docking protein FtsY [Bacteroides
           ovatus SD CMC 3f]
 gi|292631059|gb|EFF49696.1| signal recognition particle-docking protein FtsY [Bacteroides
           ovatus SD CMC 3f]
          Length = 286

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 118/273 (43%), Positives = 169/273 (61%), Gaps = 7/273 (2%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLM 97
           ++DD V + LE++LI SD+GV     I++ +  KR A D  V+ Q +   + + I  +L 
Sbjct: 6   KVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRAAADKYVNTQELNLILRDEIAALLT 64

Query: 98  PLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             +      F+   + +P+VI+VVGVNGVGKTT IGKL+ +   AG  V L A DTFR+A
Sbjct: 65  ENNSGDVADFDVPIARKPYVIMVVGVNGVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAA 124

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++QL IW +R     V  ++G+D A++AY+    A A   DV+IIDTAGRLHN   LM 
Sbjct: 125 AVEQLMIWGERVGVPVVKQKMGADPASVAYDTLSSAVANNADVVIIDTAGRLHNKVGLMN 184

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+  V+K++ P AP  VL VLD +TGQNA  Q + F      T + +TK+DGTA+GG
Sbjct: 185 ELTKIKNVMKKVVPDAPDEVLLVLDGSTGQNAFEQAKQFTLATEVTAMAITKLDGTAKGG 244

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            +I I    KIPV ++G+GEG+ DL+ F   +F
Sbjct: 245 VVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 277


>gi|190573787|ref|YP_001971632.1| putative cell division protein [Stenotrophomonas maltophilia K279a]
 gi|190011709|emb|CAQ45328.1| putative cell division protein [Stenotrophomonas maltophilia K279a]
          Length = 438

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 113/255 (44%), Positives = 158/255 (61%), Gaps = 1/255 (0%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK-MLMPLSKPFNWDFSHRP 111
           LI +D+GV     +VE L  +  +++ +    L          +L P++KP   D + +P
Sbjct: 173 LITADVGVGATTDLVEGLRKRMKSREFADANALLAALRAELIAILQPVAKPLVIDRNAKP 232

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W +R     V 
Sbjct: 233 FVVLTVGVNGVGKTTTIGKLAKRFKDEGHSLMLAAGDTFRAAAVAQLQAWGERNGVAVVA 292

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
               +DAA++A++A +  +A+   VLI DTAGRLH  S LM  +GK+ RVL ++D  APH
Sbjct: 293 QGQNADAASVAFDALQAGKARGTSVLIADTAGRLHTQSGLMNELGKIRRVLGKIDATAPH 352

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            VL V+D TTGQNAL Q+  F+A    TGL++TK+DGTA+GG +  +     IP+ F G+
Sbjct: 353 EVLMVIDGTTGQNALSQLRQFNAAVNVTGLVVTKLDGTAKGGVVFALAREFGIPIRFAGI 412

Query: 292 GEGINDLEPFVAKDF 306
           GE   DL  F  + F
Sbjct: 413 GERPEDLRVFDPEAF 427


>gi|47570280|ref|ZP_00240929.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           G9241]
 gi|229157423|ref|ZP_04285501.1| Cell division protein ftsY [Bacillus cereus ATCC 4342]
 gi|47553044|gb|EAL11446.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           G9241]
 gi|228626150|gb|EEK82899.1| Cell division protein ftsY [Bacillus cereus ATCC 4342]
          Length = 329

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 121/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV+ 
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVST 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   R   +V  +I + L+ + K  + DF++  +       V+L
Sbjct: 69  VMELIDQLKEEVQRRNIQDPR---EVQAVISEKLIEIYKG-DSDFTNEINMQKDGLTVVL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|329963573|ref|ZP_08301052.1| signal recognition particle-docking protein FtsY [Bacteroides
           fluxus YIT 12057]
 gi|328528562|gb|EGF55533.1| signal recognition particle-docking protein FtsY [Bacteroides
           fluxus YIT 12057]
          Length = 319

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 121/296 (40%), Positives = 176/296 (59%), Gaps = 6/296 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL----L 71
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV    KI+E +     
Sbjct: 15  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIERIEKRAA 74

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++Y     +  +L D ++ L+ +        F    + +P+VI+VVGVNGVGKTT IGK
Sbjct: 75  AEKYMNAQELNMILRDEIAALLTENNSDDVDDFEAPITKKPYVIMVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG  V L A DTFR+AA++QL IW +R     V  ++GSD A++A++    A 
Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGSDPASVAFDTLSSAV 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++   AP  VL VLD +TGQNA  Q  
Sbjct: 195 ANHADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVSGAPDEVLLVLDGSTGQNAFEQAR 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F  K+F
Sbjct: 255 QFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKKEF 310


>gi|301168359|emb|CBW27949.1| cell division protein [Bacteriovorax marinus SJ]
          Length = 425

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/311 (39%), Positives = 179/311 (57%), Gaps = 23/311 (7%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +SW  +L KG + +S ++   I  I + + LDD   EE+E+LL  +DIG  +A +++E L
Sbjct: 115 ISWRDRLRKGLSRSSSEVWGKIGAIFTGKGLDDDTLEEVEELLYGADIGPTIAVELIEGL 174

Query: 71  LT------------KRYAK---DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
                         K+Y K   D  +  V   V   ++K        FN     +  VI+
Sbjct: 175 EEEAKKDGFGEKEFKKYLKTFLDSKMNGVQATVDSDLYK--------FNEANRGKTKVIM 226

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNG GKTT IGKL+ K++  G KV++ A DTFR+AA+DQL++W  R  A  + ++ G
Sbjct: 227 VVGVNGAGKTTTIGKLATKLTAQGAKVVVGACDTFRAAAVDQLEVWCQRAGAQMIRAKEG 286

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           ++ + + Y+A + A  +  D  I+DTAGRLH    LM  + K   VLK+LD  APH  L 
Sbjct: 287 ANPSGVGYDALQTAINEGADYCILDTAGRLHTKGNLMEELKKSRDVLKKLDDSAPHQTLL 346

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DA TGQNALRQ E F+   G +GLI TK DG+++ G  I IV   K+P+ ++GVGE +
Sbjct: 347 VIDAITGQNALRQAEEFNNTLGLSGLIFTKCDGSSKAGSAIGIVDKLKVPIAYIGVGEQV 406

Query: 296 NDLEPFVAKDF 306
            DL  F   ++
Sbjct: 407 EDLNIFNLSEY 417


>gi|126661952|ref|ZP_01732951.1| putative recognition particle-docking protein [Flavobacteria
           bacterium BAL38]
 gi|126625331|gb|EAZ96020.1| putative recognition particle-docking protein [Flavobacteria
           bacterium BAL38]
          Length = 326

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 122/299 (40%), Positives = 187/299 (62%), Gaps = 8/299 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + L KG   T       +T  ++ + ++D  V + LE++L+ SD+GV    KI+E +  +
Sbjct: 23  QSLDKGLEKTKTSFFSKLTKAVAGKSKVDADVLDNLEEILVSSDVGVNTTLKIIERI-EE 81

Query: 74  RYAKDV-----SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           R +KD       +  +L + ++ L+ +     +  F+   + +P+VI+VVGVNGVGKTT 
Sbjct: 82  RVSKDKYLGTDELNGILREEIASLLSETNSGEATQFDIPKNTKPYVIMVVGVNGVGKTTT 141

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +   AG  V+L A DTFR+AAIDQL+IWADR     V  ++GSD A++A++  +
Sbjct: 142 IGKLAYQFKKAGYNVVLGAADTFRAAAIDQLQIWADRVGVPIVKQQMGSDPASVAFDTLQ 201

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A+  D++IIDTAGRLHN   LM  + K+ +V++++  + P+ VL VLD +TGQNA  
Sbjct: 202 SAVAQNADIVIIDTAGRLHNKVGLMNELSKVKKVMQKVVENTPNDVLLVLDGSTGQNAFE 261

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q + F A    + L +TK+DGTA+GG +I I    +IPV ++GVGEGI DL+ F   +F
Sbjct: 262 QAKQFTAATEVSCLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEF 320


>gi|307288867|ref|ZP_07568840.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0109]
 gi|306500139|gb|EFM69483.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0109]
 gi|315164394|gb|EFU08411.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX1302]
          Length = 442

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 119/261 (45%), Positives = 168/261 (64%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R S
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAS 290

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431


>gi|294780222|ref|ZP_06745594.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis PC1.1]
 gi|307270587|ref|ZP_07551885.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX4248]
 gi|307276682|ref|ZP_07557800.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX2134]
 gi|312953193|ref|ZP_07772039.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0102]
 gi|294452765|gb|EFG21195.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis PC1.1]
 gi|306506792|gb|EFM75944.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX2134]
 gi|306513168|gb|EFM81802.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX4248]
 gi|310628810|gb|EFQ12093.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0102]
 gi|315034799|gb|EFT46731.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0027]
 gi|315152761|gb|EFT96777.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0031]
 gi|315159403|gb|EFU03420.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0312]
 gi|323479025|gb|ADX78464.1| signal recognition particle-docking protein FtsY-like protein
           [Enterococcus faecalis 62]
 gi|327536215|gb|AEA95049.1| cell division protein FtsY [Enterococcus faecalis OG1RF]
          Length = 442

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 119/261 (45%), Positives = 168/261 (64%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R S
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAS 290

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431


>gi|228940935|ref|ZP_04103494.1| Cell division protein ftsY [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973864|ref|ZP_04134440.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980454|ref|ZP_04140764.1| Cell division protein ftsY [Bacillus thuringiensis Bt407]
 gi|228779274|gb|EEM27531.1| Cell division protein ftsY [Bacillus thuringiensis Bt407]
 gi|228785889|gb|EEM33892.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818771|gb|EEM64837.1| Cell division protein ftsY [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326941616|gb|AEA17512.1| cell division protein ftsY [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 329

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 192/306 (62%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K   G   T     + + D++   R++D+   EELE++LI +D+GVA 
Sbjct: 9   EKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   +   +V  +I + L+ + K  + DFS+  +       V+L
Sbjct: 69  VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEINMQEDQLTVVL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|304382717|ref|ZP_07365209.1| cell division protein FtsY [Prevotella marshii DSM 16973]
 gi|304336168|gb|EFM02412.1| cell division protein FtsY [Prevotella marshii DSM 16973]
          Length = 319

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 114/258 (44%), Positives = 163/258 (63%), Gaps = 5/258 (1%)

Query: 54  IRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS 108
           I SD+GV    KI+    E +   +Y     +  VL D +++L+ +     ++ ++    
Sbjct: 53  ITSDVGVDTTLKIIHRIEERVARDKYVSTAELNEVLRDEITQLLSENHSSDNEQWDLPTD 112

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           H P+VIL+VGVNGVGKTT IGKL+ +   AG KV L A DTFR+AAIDQL IW +R    
Sbjct: 113 HHPYVILIVGVNGVGKTTTIGKLAYQFKKAGKKVYLGAADTFRAAAIDQLCIWGERVGVP 172

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +  ++GSD A++A++    A+A   DV++IDTAGRLHN   LM  + K+  V+K++ P 
Sbjct: 173 VIKQQMGSDPASVAFDTISSAKANGADVVLIDTAGRLHNKVGLMNELKKIKDVMKKVVPT 232

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           AP  V+ VLD +TGQNA  Q + F AV   TGL +TK+DGTA+GG +I I    K+PV +
Sbjct: 233 APDEVMLVLDGSTGQNAFEQAKQFAAVTQITGLTITKLDGTAKGGVVIGISDQMKVPVKY 292

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G+GEG+ DL+ F  + F
Sbjct: 293 IGLGEGMEDLQLFHRQQF 310


>gi|209525658|ref|ZP_03274195.1| signal recognition particle-docking protein FtsY [Arthrospira
           maxima CS-328]
 gi|209493827|gb|EDZ94145.1| signal recognition particle-docking protein FtsY [Arthrospira
           maxima CS-328]
          Length = 530

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 191/318 (60%), Gaps = 12/318 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++VA E ++W++KL KG   T   L   +  I+    L+    EE+E LL+++D+GV   
Sbjct: 216 EEVAVEEITWLQKLWKGLGRTRRNLLNQLKAIVGQGPLNQAAVEEIEALLLQADVGVEAT 275

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPHVILV 116
             I+E L  +     +  +  +  + +L+  +L    KP+   +S        + ++ L+
Sbjct: 276 DVIIEALQNRLLEDALPPEDAIAYLKQLLRDLL---EKPYQNGYSPTFAPEKEQLNIWLI 332

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IG 175
            GVNG GKTT IGK++     +  + ++AAGDTFR+AA++Q+K+W +R+  + + +    
Sbjct: 333 TGVNGAGKTTTIGKIAHIAQKSDYRTLIAAGDTFRAAAVEQVKVWGERSGVEVIANPGKN 392

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D AA+ Y+A   A++++ ++L+IDTAGRL N   LM  + K+ RV+ +  P A    L 
Sbjct: 393 TDPAAVVYDAIAAAKSRETELLVIDTAGRLQNKKNLMEELNKIRRVIDKQAPDAKVESLL 452

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD+T GQN LRQ ++F  VA  +G+++TK+DGTA+GG  + +V    +P+ F+GVGE I
Sbjct: 453 VLDSTLGQNGLRQAQVFAEVAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGVGESI 512

Query: 296 NDLEPFVAKDF-SAVITG 312
            DL PF + +F  A+++G
Sbjct: 513 EDLRPFSSYEFIEALLSG 530


>gi|257870564|ref|ZP_05650217.1| signal recognition particle protein [Enterococcus gallinarum EG2]
 gi|257804728|gb|EEV33550.1| signal recognition particle protein [Enterococcus gallinarum EG2]
          Length = 433

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 116/260 (44%), Positives = 167/260 (64%), Gaps = 9/260 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FS 108
           LI +D+G   A KI + L  +   ++V   +   +V  +I + L+ L      D     +
Sbjct: 165 LIGADVGFDAAIKITDALRQEVKLRNV---KKPAEVQNVIIEKLVDLYGEAGVDEVNELN 221

Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +P   VIL VGVNGVGKTT IGKL+ +    G KV+LAA DTFR+ AIDQL +W  R  
Sbjct: 222 MQPGLTVILFVGVNGVGKTTSIGKLAHQFKSEGKKVLLAAADTFRAGAIDQLVVWGGRAG 281

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V  + G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ R+++R++
Sbjct: 282 VEVVRGKAGGDPAAVVFDAMERAKAEQADVLLVDTAGRLQNKVNLMNELEKIKRIIQRVE 341

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P+APH VL VLDATTGQNA+ Q + F      TGL++TK+DGTA+GG ++ I    ++PV
Sbjct: 342 PNAPHEVLLVLDATTGQNAMNQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELRLPV 401

Query: 287 YFLGVGEGINDLEPFVAKDF 306
             +G+GEGINDLEPF   +F
Sbjct: 402 KLVGLGEGINDLEPFDPNEF 421


>gi|291566674|dbj|BAI88946.1| signal recognition particle docking protein FtsY [Arthrospira
           platensis NIES-39]
          Length = 572

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 114/318 (35%), Positives = 191/318 (60%), Gaps = 12/318 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++VA E ++W++KL KG   T   L   +  I+    L+    EE+E LL+++D+GV   
Sbjct: 258 EEVAVEEITWLQKLWKGLGRTRRNLLNQLKAIVGQGPLNQAAVEEIEALLLQADVGVEAT 317

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPHVILV 116
             I+E L  +     +  +  +  + +L+  +L    KP+   +S        + ++ L+
Sbjct: 318 DVIIEALQNRLREDALPPEDAIAYLKQLLRDLL---EKPYQNGYSPTFAPEKEQLNIWLI 374

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IG 175
            GVNG GKTT IGK++     +  + ++AAGDTFR+AA++Q+K+W +R+  + + +    
Sbjct: 375 TGVNGAGKTTTIGKIAHIAQKSDYRSLIAAGDTFRAAAVEQVKVWGERSGVEVIANPGKN 434

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D AA+ Y+A   A++++ ++LIIDTAGRL N   LM  + K+ RV+ +  P A    L 
Sbjct: 435 TDPAAVVYDAIAAAKSRQTELLIIDTAGRLQNKKNLMEELNKIRRVIDKQAPDAKVESLL 494

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD+T GQN LRQ ++F  VA  +G+++TK+DGTA+GG  + +V    +P+ F+GVGE I
Sbjct: 495 VLDSTLGQNGLRQAQVFAEVAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGVGESI 554

Query: 296 NDLEPFVAKDF-SAVITG 312
            DL PF + +F  A+++G
Sbjct: 555 EDLRPFSSYEFIEALLSG 572


>gi|228909672|ref|ZP_04073495.1| Cell division protein ftsY [Bacillus thuringiensis IBL 200]
 gi|228849961|gb|EEM94792.1| Cell division protein ftsY [Bacillus thuringiensis IBL 200]
          Length = 329

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 192/306 (62%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K   G   T     + + D++   R++D+   EELE++LI +D+GVA 
Sbjct: 9   EKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   +   +V  +I + L+ + K  + DFS+  +       V+L
Sbjct: 69  VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEINMQEDQLTVVL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|149183218|ref|ZP_01861664.1| signal recognition particle-docking protein FtsY [Bacillus sp.
           SG-1]
 gi|148849083|gb|EDL63287.1| signal recognition particle-docking protein FtsY [Bacillus sp.
           SG-1]
          Length = 332

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 136/321 (42%), Positives = 195/321 (60%), Gaps = 31/321 (9%)

Query: 11  LSWIRKLTKGFAST----SLKLKEGIT---DIISS---------RRLDDGVREELEDLLI 54
           +S+ +KL + F ST    + K K+G++   D  SS         R++D+   EELE++LI
Sbjct: 1   MSFFKKLKEKFTSTPDSVTNKFKDGLSKTRDNFSSKVNDLVARYRKVDEDFFEELEEILI 60

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-- 112
            +D+G     ++V++L  K  AK    +R + + SEL   +   L + +  D        
Sbjct: 61  GADVGFDTVMELVDQL--KFEAK----RRNIQETSELQSVISEKLVEIYEGDEGASSELN 114

Query: 113 -------VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
                  VIL VGVNGVGKTT IGK++    + G  V+LAAGDTFR+ AIDQL++W +RT
Sbjct: 115 IQEDTLTVILFVGVNGVGKTTTIGKMAHMFKEQGKNVLLAAGDTFRAGAIDQLEVWGERT 174

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +    GSD AA+ Y+A + A+AKK D+LI DTAGRL N   LM  + K+ RV++R 
Sbjct: 175 GVPVIKHSEGSDPAAVIYDAVQSAKAKKADILICDTAGRLQNKVNLMNELQKVKRVIERE 234

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P APH VL VLDATTGQNAL Q + F      +G+++TK+DGTA+GG +I I    +IP
Sbjct: 235 IPGAPHEVLLVLDATTGQNALLQAKTFKEATDVSGIVLTKLDGTAKGGIVIGIRNELQIP 294

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           V F+G+GE ++DL+PF A+ +
Sbjct: 295 VKFVGLGEKVDDLQPFDAEKY 315


>gi|323705467|ref|ZP_08117042.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535369|gb|EGB25145.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 321

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 124/294 (42%), Positives = 186/294 (63%), Gaps = 5/294 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           ++L  G A T       I  I+S  R++DD + EELE++LI +D+GV+  +KI++ L  K
Sbjct: 25  QRLRDGLARTRDNFTSKIDGILSFGRKVDDELFEELEEILILADVGVSTTEKIIDNLKEK 84

Query: 74  -RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            +  K    +++   ++E I+ ++      F      +P +IL+VGVNGVGKTT IGKL+
Sbjct: 85  AKEQKLKDAEKIKELLAEEIYDIMEAKETSFKI---TQPTLILIVGVNGVGKTTTIGKLA 141

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            K    G +V+L A DTFR+AAIDQL++WA + + + +  E GSD A++ ++  K A+++
Sbjct: 142 NKFKRDGKRVLLVAADTFRAAAIDQLEVWAGKNNCEIIRHEEGSDPASVLFDGIKAAKSR 201

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            VDV++ DTAGRLHN   LM  + K+ RV +R           VLDATTGQNA++Q ++F
Sbjct: 202 NVDVILCDTAGRLHNKKNLMEELKKIYRVAQREFNEGNIETFLVLDATTGQNAIQQAKIF 261

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                 TG+I+TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F ++ F
Sbjct: 262 KEATDVTGIILTKLDGTAKGGIVISIKSELDIPVRFIGVGEGIDDLQEFDSEKF 315


>gi|325567327|ref|ZP_08143994.1| cell division protein FtsY [Enterococcus casseliflavus ATCC 12755]
 gi|325158760|gb|EGC70906.1| cell division protein FtsY [Enterococcus casseliflavus ATCC 12755]
          Length = 430

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 127/309 (41%), Positives = 189/309 (61%), Gaps = 10/309 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           + A E+ S   K TKG   +     + + ++ ++ R +D+   EE+E+ LI +D+G   A
Sbjct: 114 QAAPETESVQDKYTKGLTKSRKTFGQRMNELFANFRTVDEDFFEEVEETLIGADVGFDAA 173

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN----WDFSHRP--HVILVV 117
            KI + L  +   ++V   +   DV  +I + L+ L          + + +P   VIL V
Sbjct: 174 MKIADALRQEVKLRNV---KKTADVQNVIIEKLVDLYGEAGVGEVNELNMQPGLTVILFV 230

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +    G KV+LAA DTFR+ AIDQL +W +R   + V    G D
Sbjct: 231 GVNGVGKTTSIGKLAHQFKAEGKKVLLAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGD 290

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A ++A+ +  DVL++DTAGRL N   LM  + K+ R+++R+DP APH VL VL
Sbjct: 291 PAAVVFDAMERAKRENADVLLVDTAGRLQNKVNLMNELEKIKRIIQRVDPTAPHEVLLVL 350

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQNA+ Q + F      +GL++TK+DGTA+GG ++ I    ++PV  +G+GEGIND
Sbjct: 351 DATTGQNAMNQAKQFKETTDVSGLVLTKLDGTAKGGIVLAIRNELRLPVKLVGLGEGIND 410

Query: 298 LEPFVAKDF 306
           LEPF   +F
Sbjct: 411 LEPFDPNEF 419


>gi|239624034|ref|ZP_04667065.1| signal recognition particle-docking protein FtsY [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239522065|gb|EEQ61931.1| signal recognition particle-docking protein FtsY [Clostridiales
           bacterium 1_7_47FAA]
          Length = 314

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 129/296 (43%), Positives = 181/296 (61%), Gaps = 4/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G A T   +  GI  I S    +DD   EE+E+ LI  D+G+     IVE+L 
Sbjct: 8   FFGRLVEGLAKTRNNIVSGIDSIFSGFSAIDDDFYEEIEETLIMGDLGIQTTMSIVEDLR 67

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +       ++  LI+ +   +    N ++F HR  V+LV+GVNGVGKTT +GK
Sbjct: 68  AKVKEQHIKEPEECKEL--LINSIKEQMDLGENAYEFEHRKSVVLVIGVNGVGKTTSVGK 125

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++ D+G KV+LAA DTFR+AAI+QL  WA R   D +  + GSD AA+ Y+A   A+
Sbjct: 126 LAGQLKDSGHKVILAAADTFRAAAIEQLTEWAGRAGVDIIAQQEGSDPAAVIYDAVAAAK 185

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++K DVLI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQNAL Q  
Sbjct: 186 SRKADVLICDTAGRLHNKKNLMEELRKINRIIDKEYPDAYRETLVVLDGTTGQNALAQAR 245

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F  VA  TG+I+TK+DGTA+GG  + I     +PV ++G+GE I+DL+ F A DF
Sbjct: 246 QFMEVADITGIILTKLDGTAKGGIAVAIQSELGLPVKYIGIGEQIDDLQKFNADDF 301


>gi|260219894|emb|CBA26882.1| Cell division protein ftsY homolog [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 308

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 131/304 (43%), Positives = 187/304 (61%), Gaps = 9/304 (2%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E   W+ KL  G   T+      I+ +    ++D+ + E+LE  L+ +D GVA  Q + +
Sbjct: 10  ERQKWLDKLKAGLGKTA----SSISGVFGGSQIDEALYEDLEGALLMADAGVAATQLLTD 65

Query: 69  ELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            L  K  A  V+    L ++  +EL  ++L PL KP      H P VI+V GVNG GKTT
Sbjct: 66  ALRKKVKATGVTHPTALKNILIAELT-ELLQPLQKPLVIG-EHTPTVIMVAGVNGAGKTT 123

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K ++D+   V+LAA DTFR+AA +QL +WADR + + V  E G D AA++Y++ 
Sbjct: 124 SIGKLTKHLADSNASVLLAAADTFRAAAREQLTVWADRNTVEIVSQE-GGDPAAVSYDSV 182

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
              +A+  DV++IDTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNA+
Sbjct: 183 TAGKARGKDVVLIDTAGRLPTQLHLMEELKKIKRVIGKADGTAPHEVLLVIDGNTGQNAV 242

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QV+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE +++LE F A++F
Sbjct: 243 AQVKAFDDALGLTGLIVTKLDGTAKGGVLAAIARERPIPVYFIGVGEKLDELETFNAREF 302

Query: 307 SAVI 310
           +  +
Sbjct: 303 AQAL 306


>gi|298372769|ref|ZP_06982759.1| signal recognition particle-docking protein FtsY [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298275673|gb|EFI17224.1| signal recognition particle-docking protein FtsY [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 316

 Score =  212 bits (539), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 122/295 (41%), Positives = 176/295 (59%), Gaps = 6/295 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L  G   T   + + I+  IS + ++DD + + +E+ LI +D+GV    KI+E L  KR 
Sbjct: 15  LDNGLDKTKTSIFDKISRAISGKSKIDDEILDNIEEALISADVGVNTTIKIIERL-EKRI 73

Query: 76  AKD--VSVQRVLYDVSELIHKML--MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           A+D  VS   +   +++ I  +L   P S     +    P++ILVVGVNGVGKTT IGKL
Sbjct: 74  ARDKYVSSDELHNIINQEIVALLSEQPQSGTSFENLPSNPYIILVVGVNGVGKTTTIGKL 133

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +   AG KV L A DTFR+AAIDQL IW  R     +  ++G+D A++ ++    A+A
Sbjct: 134 ANRFKQAGKKVFLGAADTFRAAAIDQLMIWGQRVDVPVIKHKMGADPASVVFDTLSSAKA 193

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +V+IIDTAGRLHN   LM  + K+  V+ ++ P     VL VLD +TGQNA  Q   
Sbjct: 194 NNAEVVIIDTAGRLHNKVNLMNELTKIRNVVSKIFPDIKPEVLLVLDGSTGQNAYEQARQ 253

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F      T L +TK+DGTARGG +I I    +IPV ++G+GEGI+D++ F  ++F
Sbjct: 254 FSQATNVTALAITKLDGTARGGVVIGISDQMQIPVKYIGLGEGIDDIQVFDKEEF 308


>gi|303229541|ref|ZP_07316329.1| signal recognition particle-docking protein FtsY [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515666|gb|EFL57620.1| signal recognition particle-docking protein FtsY [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 311

 Score =  212 bits (539), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 122/302 (40%), Positives = 180/302 (59%), Gaps = 9/302 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           +  +  K+ +G   T     + + T II    +DD   ++LE +++ SD+G    + +++
Sbjct: 2   AFGFFNKIKEGLEKTRKSFVKNVETVIIGYAEIDDDFLDDLEAVMLTSDLGPKTTEYLMK 61

Query: 69  ELLTKRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           E+  +R   +  +     V+  + + I +ML+           H P VILVVGVNGVGKT
Sbjct: 62  EI--RRGVTEGVINNTGDVMPFMEDRITEMLVDQEDEI---ILHHPEVILVVGVNGVGKT 116

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T I KL+   +  G KV++AAGDTFR+AA DQL IWADR     V  + G+D AA+ Y+A
Sbjct: 117 TTIAKLANYYTKEGKKVIIAAGDTFRAAAADQLSIWADRVGVPIVKHKEGADPAAVVYDA 176

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+  D++I+DTAGRLH    LM  + KM RV       APH  L VLD TTGQNA
Sbjct: 177 MEAAKARNADMVIVDTAGRLHTKVNLMEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNA 236

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q ++F       G+++TK+DGTA+GG +I I     +PV ++GVGEG++DL PF AK+
Sbjct: 237 VSQAKLFGQAVPVNGIVVTKLDGTAKGGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKE 296

Query: 306 FS 307
           F+
Sbjct: 297 FA 298


>gi|325509166|gb|ADZ20802.1| Signal recognition particle GTPase, FtsY [Clostridium
           acetobutylicum EA 2018]
          Length = 303

 Score =  212 bits (539), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 132/304 (43%), Positives = 188/304 (61%), Gaps = 18/304 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           ++  KL  G + T   L   I+D+++S   +DD + +ELE++LI SDIGV  +  I+++L
Sbjct: 4   NFFDKLKNGLSKTKNNLTSKISDVLTSTVTIDDDLYDELEEILITSDIGVETSLYIIDKL 63

Query: 71  ---LTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              + +   KD S+     + V+ D+       LMP            P  ILVVGVNGV
Sbjct: 64  KEKIKENKVKDPSLVNDCLKEVIKDILGDKKGSLMP---------KQIPETILVVGVNGV 114

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGK+S ++    LKV++AA DTFR+AAIDQL++W+ R + D +  + GSD AA+ 
Sbjct: 115 GKTTSIGKISSRLKSQNLKVIMAAADTFRAAAIDQLEVWSKRANVDIIKHQEGSDPAAVV 174

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+K DVLI DTAGRLHN   LM  + K+ R++ R    +    L VLDATTG
Sbjct: 175 FDAIEAAKARKADVLICDTAGRLHNKKNLMNELEKINRIIDREFSQSTRRTLLVLDATTG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q + F  V    G+++TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F 
Sbjct: 235 QNAVIQAKQFMEVCKVDGIVLTKLDGTAKGGIVISIKHQLDIPVEFVGVGEGIDDLQEFN 294

Query: 303 AKDF 306
             DF
Sbjct: 295 PSDF 298


>gi|330818359|ref|YP_004362064.1| Signal recognition particle-docking protein FtsY [Burkholderia
           gladioli BSR3]
 gi|327370752|gb|AEA62108.1| Signal recognition particle-docking protein FtsY [Burkholderia
           gladioli BSR3]
          Length = 392

 Score =  212 bits (539), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 129/302 (42%), Positives = 184/302 (60%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SWI +L  G + TS  L      +  S ++D+ + EELE  L+ SD GV   + ++  L 
Sbjct: 97  SWIARLRSGLSKTSSSLTS----VFVSTKIDEDLYEELETALLMSDAGVDATEYLLGALR 152

Query: 72  TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K  A+ ++  Q+V   +  L+  +L PL K      +  P V+++ GVNG GKTT IGK
Sbjct: 153 EKVKAERLTDPQQVKAALRGLLIALLAPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSIGK 211

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +      V+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+
Sbjct: 212 LAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESG-DPAAVIFDAVGAAR 270

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K++V++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL QV+
Sbjct: 271 ARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAQADAPHEVLLVIDANTGQNALAQVK 330

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++F+  +
Sbjct: 331 AFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAEEFTDAL 390

Query: 311 TG 312
            G
Sbjct: 391 LG 392


>gi|229031477|ref|ZP_04187477.1| Cell division protein ftsY [Bacillus cereus AH1271]
 gi|228729766|gb|EEL80746.1| Cell division protein ftsY [Bacillus cereus AH1271]
          Length = 329

 Score =  212 bits (539), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 189/303 (62%), Gaps = 6/303 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV+ 
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVST 68

Query: 63  AQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             +++++L   + +R  +D   VQ V+ +    I+K     S   N     +  V+L VG
Sbjct: 69  VMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSEFSNEINMQ-EDQLTVVLFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD 
Sbjct: 128 VNGVGKTTTIGKLAHKFKTEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+D
Sbjct: 188 AAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVID 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL
Sbjct: 248 ATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307

Query: 299 EPF 301
           + F
Sbjct: 308 QQF 310


>gi|77919948|ref|YP_357763.1| cell division membrane protein [Pelobacter carbinolicus DSM 2380]
 gi|77546031|gb|ABA89593.1| signal recognition particle-docking protein FtsY [Pelobacter
           carbinolicus DSM 2380]
          Length = 472

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 116/249 (46%), Positives = 157/249 (63%), Gaps = 6/249 (2%)

Query: 56  SDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           +D+G+   Q++++ L   L K    D  V R    +   I   LM  S P +   +  P 
Sbjct: 213 ADLGMKTTQQLIQSLEMRLDKGQLNDPDVLR--EALKGEIRDRLMQESAPLDPQRAT-PF 269

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VI+VVGVNGVGKTT IGKL+ +    G KV++ AGDTFR+AA +QL++W  R   + +  
Sbjct: 270 VIMVVGVNGVGKTTTIGKLAHQYVQQGKKVLVGAGDTFRAAAAEQLEVWGQRAGVEVIRQ 329

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             GSD AA+A++A K AQA+K DVL++DTAGRLH    LM  + K+ RVL R  P APH 
Sbjct: 330 AAGSDPAAVAFDAIKAAQARKADVLLLDTAGRLHTKVNLMEELKKIRRVLDREMPGAPHE 389

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L V+DATTGQNAL Q  +F      +GL +TK+DGTARGG L+ I     +P++++G+G
Sbjct: 390 TLLVVDATTGQNALVQARLFQEAVSVSGLALTKLDGTARGGMLVAIGGELGLPIHYVGIG 449

Query: 293 EGINDLEPF 301
           EGI DL PF
Sbjct: 450 EGIEDLRPF 458


>gi|225874949|ref|YP_002756408.1| signal recognition particle-docking protein FtsY [Acidobacterium
           capsulatum ATCC 51196]
 gi|225794105|gb|ACO34195.1| signal recognition particle-docking protein FtsY [Acidobacterium
           capsulatum ATCC 51196]
          Length = 324

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 130/313 (41%), Positives = 188/313 (60%), Gaps = 15/313 (4%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   +  ++ +  + T   L + I  +I+ +R +D+   EELE  LI SD+GV VA ++V
Sbjct: 13  EEKGFFDRMKQAVSRTRESLSDRIESVIAMTREVDEAALEELEMTLIASDLGVHVAAEVV 72

Query: 68  EELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++      +D + +  + D +EL       + K+L    KP     +  P VI++VGVN
Sbjct: 73  GQI------RDRAKREQIRDGAELRDLLKSSLKKILDEHQKPPRT-VATPPEVIVMVGVN 125

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT  GKL+      G  V+L A DTFR+AAI+QL++W +RT  + + S  G D +A
Sbjct: 126 GTGKTTTTGKLAAYYRRQGKTVLLCAADTFRAAAIEQLEVWGERTGVELIKSRQGGDPSA 185

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A++ DVLI+DTAGRLH  S LMA + KM R  +R  P APH VL VLDAT
Sbjct: 186 VLFDALQAAKARQTDVLIVDTAGRLHTKSGLMAELDKMRRTTQRFIPDAPHEVLLVLDAT 245

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN L+Q  +F   AG TG+++TK+DGTA+GG  I I     +PV F G+GE +NDL P
Sbjct: 246 TGQNGLQQARLFTESAGVTGIVLTKLDGTAKGGIAIAIAREMGVPVRFAGIGEQVNDLLP 305

Query: 301 FVAKDFSAVITGC 313
           F +  F   + G 
Sbjct: 306 FDSDAFVEALLGS 318


>gi|317129236|ref|YP_004095518.1| signal recognition particle-docking protein FtsY [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474184|gb|ADU30787.1| signal recognition particle-docking protein FtsY [Bacillus
           cellulosilyticus DSM 2522]
          Length = 332

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 127/312 (40%), Positives = 187/312 (59%), Gaps = 15/312 (4%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+  ++ S   K   G   T       + D++ + R++D+   EELED+LI +D+GV  
Sbjct: 9   EKITGQTESVTEKFKDGLTKTRDSFVGKMNDLVKNYRKVDEEFFEELEDILISADVGVHT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRP-HVI 114
              +++EL      KD +  R + D       +SE + ++L    +    +       VI
Sbjct: 69  VMDLIDEL------KDEAKSRKISDAVDIQPLISEKLAELLQKSEEETKLNMQDNGLTVI 122

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L VGVNGVGKTT IGKL+ K    G KV+LAAGDTFR+ AI+QL++W +R   D +    
Sbjct: 123 LFVGVNGVGKTTTIGKLANKFKQEGKKVLLAAGDTFRAGAIEQLEVWGERVGVDVIKQHE 182

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD AA+ Y+A + A++++ DVL+ DTAGRL N   LM  + K+ RV+ R  P APH VL
Sbjct: 183 GSDPAAVMYDAIQSAKSREADVLLCDTAGRLQNKVNLMNELEKVKRVITREIPDAPHEVL 242

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNA+ Q + F      +G+++TK+DGTA+GG ++ I     IPV F+G+GEG
Sbjct: 243 LVLDATTGQNAMSQAKTFGKATDVSGIVLTKLDGTAKGGIVLAIRHELDIPVKFVGLGEG 302

Query: 295 INDLEPFVAKDF 306
           ++DL+ F A  +
Sbjct: 303 MDDLQEFQADQY 314


>gi|255970710|ref|ZP_05421296.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T1]
 gi|255961728|gb|EET94204.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T1]
          Length = 371

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 119/261 (45%), Positives = 168/261 (64%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 102 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 159

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R S
Sbjct: 160 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAS 219

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 220 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 279

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 280 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 339

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 340 KLVGLGEGINDLEPFNANDFA 360


>gi|332799150|ref|YP_004460649.1| signal recognition particle-docking protein FtsY [Tepidanaerobacter
           sp. Re1]
 gi|332696885|gb|AEE91342.1| signal recognition particle-docking protein FtsY [Tepidanaerobacter
           sp. Re1]
          Length = 297

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 126/297 (42%), Positives = 190/297 (63%), Gaps = 7/297 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +++I KL +  + T     E   +I+  ++++D+   EELE+LLI +D+GV+  Q ++E+
Sbjct: 1   MAFIDKLKQSLSKTRESFSEKFDNILKFNKKIDEKTFEELEELLISADVGVSTTQMLIEK 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  K  +K ++    L  V   + + ++ L    N   ++ P V+L+VGVNGVGKTT IG
Sbjct: 61  L--KENSKKITAAEELKSV---LKEEIIDLFPKENISLTY-PTVMLIVGVNGVGKTTSIG 114

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+    + G KV+LAA DTFR+AAIDQL+IW  R   D +  + G+D A++ ++A +  
Sbjct: 115 KLANIYKNQGKKVILAAADTFRAAAIDQLEIWGQRVGVDVIKHQEGADPASVLFDALQAG 174

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K D++I DTAGRLH    LM  + K+ RV ++  P A    L VLDATTGQNAL Q 
Sbjct: 175 KARKADLIICDTAGRLHTKKNLMEELKKLYRVCQKEYPQANVVSLIVLDATTGQNALIQA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +MF      +G+I+TK+DGTA+GG +I I     IPV+++G+GEGINDL  F ++DF
Sbjct: 235 KMFKEAVDFSGIILTKLDGTAKGGIVIAIASELGIPVWYIGIGEGINDLHEFNSQDF 291


>gi|160946003|ref|ZP_02093229.1| hypothetical protein FAEPRAM212_03536 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443734|gb|EDP20739.1| hypothetical protein FAEPRAM212_03536 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103254|emb|CBL00798.1| signal recognition particle-docking protein FtsY [Faecalibacterium
           prausnitzii SL3/3]
          Length = 312

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 121/292 (41%), Positives = 177/292 (60%), Gaps = 4/292 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           K+  G   T       I + ++   +DD + ++LE+ LI +D+G  VA  +V++L  +  
Sbjct: 13  KMKTGLEKTRTGFWGSIMNTLTGSVIDDEMYDDLEEQLILADVGGEVAVHLVDKLRDRVR 72

Query: 76  AKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K +       D + ++I + + P ++        +P VILV+GVNGVGKTT I KL+  
Sbjct: 73  DKGLKTGEQAADALRDIIAEEMTPEAE---MALDGKPAVILVIGVNGVGKTTSIAKLADY 129

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
            +  G +VMLAAGDTFR+AA +QL+IWA R     V +  G+D AA+ ++  K A A+  
Sbjct: 130 YTRQGKRVMLAAGDTFRAAASEQLEIWASRAGVPIVSAGEGADPAAVIFDTVKSATARGY 189

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I DTAGRLHN S LMA + K+ R +K+  P A    L VLDA TGQNA+ Q + F  
Sbjct: 190 DMVIADTAGRLHNKSNLMAELSKISRSVKKASPEASLETLLVLDAITGQNAISQAKEFCK 249

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            A  TG+I+TK+DGTA+GG ++ +     +PV F+GVGEGI+DL PF  + F
Sbjct: 250 AADATGIILTKLDGTAKGGCVVAVKQRLGLPVRFIGVGEGIDDLLPFTPEGF 301


>gi|312127773|ref|YP_003992647.1| signal recognition particle-docking protein ftsy
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777792|gb|ADQ07278.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 301

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 126/299 (42%), Positives = 190/299 (63%), Gaps = 8/299 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     E +  ++ S +++DD + EELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFFDRLKEGLSKTKKNFTEKVESLLKSFKQVDDDLFEELEEILVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           L  +     V  +R+L    V EL+ + ++ +    N      P +IL+VGVNGVGKTT 
Sbjct: 61  LKER-----VKKERILDPQVVKELLKEEMLNIINLENKLSERYPLIILMVGVNGVGKTTS 115

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGK++K +   G KV++AA DTFR+AA +QL+IWA R   D +    G+D AA+ ++  +
Sbjct: 116 IGKIAKLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGADPAAVVFDGIQ 175

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQNAL 
Sbjct: 176 AMRARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEAAKETLLVIDATTGQNALV 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q + F+     +G+++TK+DGTA+GG +I I    KIPV F+GVGE I+DL+ F AK+F
Sbjct: 236 QAKEFNQAVNISGIVLTKLDGTAKGGIVISICDELKIPVKFVGVGEKIDDLQQFNAKEF 294


>gi|302343403|ref|YP_003807932.1| signal recognition particle-docking protein FtsY [Desulfarculus
           baarsii DSM 2075]
 gi|301640016|gb|ADK85338.1| signal recognition particle-docking protein FtsY [Desulfarculus
           baarsii DSM 2075]
          Length = 361

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/302 (42%), Positives = 185/302 (61%), Gaps = 11/302 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +    T  K+   I  I   R++DD V +ELE++L+ +D+GV    +++  L  K  
Sbjct: 66  RLAERLGKTREKISGSIDKIAIGRKIDDEVLDELEEVLVTADLGVKTTAELIGGLRGKVR 125

Query: 76  AKDVSVQRVL-----YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+++    L       + E+  +   P +       + +PHVI+VVGVNGVGKTT IGK
Sbjct: 126 RKELADAEALKGALRAGIEEIFGRTAAPPA------MTAKPHVIMVVGVNGVGKTTTIGK 179

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +S  G KVML A DTFR+AA +QL+IWA R     V  + G+D +A+AY+  + A 
Sbjct: 180 LASHLSAQGKKVMLGAADTFRAAAAEQLEIWAQRVGCPIVRQKEGADPSAVAYDTVEAAV 239

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VDV IIDTAGRLH    LM  + K+ RV+ +    APH V+ VLDATTGQNAL Q +
Sbjct: 240 GRGVDVAIIDTAGRLHTKVNLMDELRKIHRVIGKKMDGAPHEVILVLDATTGQNALNQAK 299

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           MF+     TGLI+TK+DGTA+GG  + I    K+P+ ++GVGE ++DL PF A++F+  I
Sbjct: 300 MFNEAVQLTGLILTKLDGTAKGGVAVAIAGELKLPICYVGVGEHLDDLRPFDAREFAEAI 359

Query: 311 TG 312
            G
Sbjct: 360 FG 361


>gi|297617462|ref|YP_003702621.1| signal recognition particle-docking protein FtsY [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145299|gb|ADI02056.1| signal recognition particle-docking protein FtsY [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 361

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 137/303 (45%), Positives = 198/303 (65%), Gaps = 9/303 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L K  A T   + E +  +I +SRR+DD   EELE++LI++D+GV+ A ++++ L 
Sbjct: 60  FFARLKKSLAKTRQNITEKVERLIKTSRRIDDEFFEELEEILIQADVGVSTAMELIDNL- 118

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTV 127
            +R  K   +  V  +V  LI + ++ + +    P N      P VI+VVGVNGVGKTT 
Sbjct: 119 -RRAVKQKKITEV-DEVRGLIKQEVVSIMEGSDAPLN-KAPEGPTVIMVVGVNGVGKTTT 175

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G KV++AA DTFR+AAIDQL+IWA+R  AD +  + G+D  A+ ++A  
Sbjct: 176 IGKLAYRFKREGKKVIIAAADTFRAAAIDQLQIWAERVGADLIKHQEGADPGAVVFDAVN 235

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            AQA++ DVLI+DTAGRLH  + LM  I K+ RV++R    APH VL VLDATTGQNA+ 
Sbjct: 236 AAQARRADVLIVDTAGRLHTKTNLMEEIAKVKRVIQRTYADAPHEVLLVLDATTGQNAIS 295

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q  +F  V G TG+++TK+DGTA+GG +I I     IPV  +G+GEG+ DL  F A++F+
Sbjct: 296 QANLFKQVTGVTGIVLTKLDGTAKGGIVIAIAKELDIPVKLVGIGEGLEDLRDFSAEEFA 355

Query: 308 AVI 310
             +
Sbjct: 356 EAL 358


>gi|187477074|ref|YP_785098.1| cell division protein [Bordetella avium 197N]
 gi|115421660|emb|CAJ48170.1| cell division protein [Bordetella avium 197N]
          Length = 336

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 180/304 (59%), Gaps = 11/304 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L +G A T     + I  I    ++D+ + EELE  LI +D G+    K++  L 
Sbjct: 36  SWLSRLKQGLARTG----QSIGGIFVGVKVDENLFEELESALIMADAGIEATDKLLTALR 91

Query: 72  TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +    +V   + +L+   L PL + F+   +  P V+++ GVNG GKTT IGK
Sbjct: 92  ARVKKERIEDPAQVKAALRQLLADHLKPLERQFDLKRAQ-PLVVMIAGVNGAGKTTSIGK 150

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G  V+LAAGDTFR+AA +QL  W  R +   +  + G D AA+A++A    +
Sbjct: 151 LAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVIAQD-GGDPAAVAFDAVNAGR 209

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+   V++IDTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL Q+ 
Sbjct: 210 ARAAGVVMIDTAGRLPTQLHLMEELKKIRRVIGKADAAAPHEVLLVIDGNTGQNALAQIR 269

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAKDF 306
            F A    TGL++TK+DGTA+GG L  +    +    +PVY++GVGEG+ DL+PFVA++F
Sbjct: 270 AFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGLEDLQPFVAEEF 329

Query: 307 SAVI 310
           ++ +
Sbjct: 330 ASAL 333


>gi|229013030|ref|ZP_04170195.1| Cell division protein ftsY [Bacillus mycoides DSM 2048]
 gi|228748284|gb|EEL98144.1| Cell division protein ftsY [Bacillus mycoides DSM 2048]
          Length = 332

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 121/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + +++   R++D+   EELE++LI +D+GV+ 
Sbjct: 12  EKISKQTDTVTEKFKQGLEKTRNSFADKVNELVYRYRKIDEDFFEELEEILISADVGVST 71

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   +   +V  +I + L+ + K  + DFS+  +       V+L
Sbjct: 72  VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEVNIQEDQLTVVL 127

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 128 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 187

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 188 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMNELEKVKRVIEREVPGAPHEVLL 247

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 248 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 307

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 308 DDLQQF 313


>gi|78355607|ref|YP_387056.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218012|gb|ABB37361.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 506

 Score =  211 bits (538), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 120/300 (40%), Positives = 183/300 (61%), Gaps = 5/300 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL++G   T  ++   I  ++S+ +++D+   EELE++LI +D+G   A ++V  L  + 
Sbjct: 209 KLSEGLTRTKEQITRRIDGLLSAHKQIDEAFWEELEEILIMADVGYEPAMELVGRLRARV 268

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            A   S    L+   EL+ + L  + + P      + P V+L+VGVNGVGKTT I KL+ 
Sbjct: 269 RASG-SDDPALF--KELMREELEDIFRTPRRIAAINPPEVVLMVGVNGVGKTTTIAKLAY 325

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +    G KV++AAGDTFR+AAI+QLK+WADR  A F      +D AA+AYEA  +A  + 
Sbjct: 326 RARLQGKKVLIAAGDTFRAAAIEQLKVWADRVGAGFHSKGANADPAAVAYEAMDKAVKEG 385

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+L +DTAGR+H    LM  + K+  VL +  P APH  + V+DATTGQNAL Q  +F 
Sbjct: 386 YDILFVDTAGRIHTKVNLMEELQKIRGVLGKKHPGAPHRSILVIDATTGQNALSQTRLFD 445

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                  +++TK+DGTA+GG ++ + +   IP+ ++G+GE + DL PF  +DF+  + G 
Sbjct: 446 ESCKLDEIVLTKLDGTAKGGIVVAVAMQFGIPITYVGLGEKMEDLRPFDGRDFAQALLGS 505


>gi|256958375|ref|ZP_05562546.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis DS5]
 gi|257078314|ref|ZP_05572675.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis JH1]
 gi|256948871|gb|EEU65503.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis DS5]
 gi|256986344|gb|EEU73646.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis JH1]
          Length = 331

 Score =  211 bits (538), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 119/261 (45%), Positives = 168/261 (64%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 62  LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 119

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R S
Sbjct: 120 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAS 179

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 180 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 239

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 240 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 299

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 300 KLVGLGEGINDLEPFNANDFA 320


>gi|229086400|ref|ZP_04218576.1| Cell division protein ftsY [Bacillus cereus Rock3-44]
 gi|228696916|gb|EEL49725.1| Cell division protein ftsY [Bacillus cereus Rock3-44]
          Length = 329

 Score =  211 bits (538), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 189/303 (62%), Gaps = 6/303 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GVA 
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVAT 68

Query: 63  AQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             +++++L   + +R  +D   VQ V+ +    I+K     S   N     +  VIL VG
Sbjct: 69  VMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDEKFSNEINMQ-QDQLTVILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD 
Sbjct: 128 VNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+D
Sbjct: 188 AAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVID 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q + F      +G+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL
Sbjct: 248 ATTGQNGLSQAKTFREATNVSGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307

Query: 299 EPF 301
           + F
Sbjct: 308 QQF 310


>gi|42782939|ref|NP_980186.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           ATCC 10987]
 gi|42738866|gb|AAS42794.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           ATCC 10987]
          Length = 329

 Score =  211 bits (538), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV+ 
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVST 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-------IL 115
             +++++L  +   +++   +   +V  +I + L+ + K  + DF++  +V       +L
Sbjct: 69  VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLIEIYKG-DSDFTNEINVQKDGLTVVL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|315171220|gb|EFU15237.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX1342]
          Length = 442

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKTAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKVEGKKVLMAAADTFRAGAIDQLVVWGERAG 290

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431


>gi|217961267|ref|YP_002339835.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           AH187]
 gi|222097292|ref|YP_002531349.1| signal recognition particle-docking protein ftsy [Bacillus cereus
           Q1]
 gi|217065005|gb|ACJ79255.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           AH187]
 gi|221241350|gb|ACM14060.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           Q1]
 gi|324327744|gb|ADY23004.1| signal recognition particle-docking protein FtsY [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 329

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 193/306 (63%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV+ 
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVST 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   +   +V  +I + L+ + K  + DF++  +       V+L
Sbjct: 69  VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLIEIYKG-DSDFTNEINEQKDGLTVVL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|218899000|ref|YP_002447411.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           G9842]
 gi|228902350|ref|ZP_04066507.1| Cell division protein ftsY [Bacillus thuringiensis IBL 4222]
 gi|228966793|ref|ZP_04127837.1| Cell division protein ftsY [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218543677|gb|ACK96071.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           G9842]
 gi|228792892|gb|EEM40450.1| Cell division protein ftsY [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857319|gb|EEN01822.1| Cell division protein ftsY [Bacillus thuringiensis IBL 4222]
          Length = 329

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 192/306 (62%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K   G   T     + + D++   R++D+   EELE++LI +D+GVA 
Sbjct: 9   EKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVAT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   +   +V  +I + L+ + K  + DFS+  +       V+L
Sbjct: 69  VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEINMQEDQLTVVL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEIDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|28378331|ref|NP_785223.1| signal recognition particle receptor FtsY [Lactobacillus plantarum
           WCFS1]
 gi|28271166|emb|CAD64071.1| signal recognition particle receptor FtsY [Lactobacillus plantarum
           WCFS1]
          Length = 515

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 119/274 (43%), Positives = 165/274 (60%), Gaps = 8/274 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-M 97
           R +D+   ++LED LI SD+G   A +I +EL  +   K+   ++ +  V  ++ K++ M
Sbjct: 233 RHVDEAFFDDLEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKEISSV--IVEKLVDM 290

Query: 98  PLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                   D S       P VIL VGVNG GKTT IGK++      G KV+LAA DTFR+
Sbjct: 291 YGEAGEGEDNSIHMAKSGPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRA 350

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI QL++W  R   D V     SD AA+ ++A K+A+A+  DVL +DTAGRL N   LM
Sbjct: 351 GAIQQLQVWGQRDGVDVVAKAEKSDPAAVCFDAVKKAKAEDYDVLFVDTAGRLQNKVNLM 410

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+ RV+ R  P APH VL VLDATTGQNAL Q ++F      +G+++TK+DGTARG
Sbjct: 411 NELEKIKRVITREIPDAPHEVLLVLDATTGQNALNQAKLFKQSTDVSGIVLTKLDGTARG 470

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G ++ I     + V ++G+GE + DL PF A DF
Sbjct: 471 GIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDF 504


>gi|193214940|ref|YP_001996139.1| signal recognition particle-docking protein FtsY [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088417|gb|ACF13692.1| signal recognition particle-docking protein FtsY [Chloroherpeton
           thalassium ATCC 35110]
          Length = 313

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 132/302 (43%), Positives = 184/302 (60%), Gaps = 12/302 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVA----VAQKIVE 68
           I +L +G A T   +K  IT ++  R  +DD   EELE +LI +D+GV     +  KI E
Sbjct: 9   ISRLKEGLAKTRENIKTKITKLVKGRTEIDDEFLEELEQILISADVGVQTTLDIVDKITE 68

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGK 124
               +RYA +  +  +L D    I KML         DF       P+VIL+VGVNGVGK
Sbjct: 69  RAKNERYASEEDLNNMLIDE---IQKMLSDARDAHVVDFDAPLPSTPYVILIVGVNGVGK 125

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGK++     AG KV++AA DTFR+AA +QL+IWA+R     V    G+D A++ ++
Sbjct: 126 TTSIGKMAYNYKTAGKKVLIAAADTFRAAATEQLEIWAERAGVPIVGQRQGADPASVVFD 185

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           +   A ++ +DV+++DTAGRLHN   LM  + K++RV ++  P APH VL VLDA+TGQN
Sbjct: 186 SVSSAVSRDMDVVLVDTAGRLHNKIHLMEELSKIMRVAQKKVPDAPHEVLLVLDASTGQN 245

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q + F      TGLI+TK+DGTA+GG +I I     IPV ++GVGE I DL+ F  +
Sbjct: 246 AINQAKEFMKSVKVTGLILTKLDGTAKGGVVIGISRELNIPVKYIGVGEKIEDLQIFDRQ 305

Query: 305 DF 306
            F
Sbjct: 306 KF 307


>gi|55821418|ref|YP_139860.1| signal recognition particle receptor (docking protein)
           [Streptococcus thermophilus LMG 18311]
 gi|55823343|ref|YP_141784.1| signal recognition particle receptor [Streptococcus thermophilus
           CNRZ1066]
 gi|55737403|gb|AAV61045.1| signal recognition particle receptor (docking protein)
           [Streptococcus thermophilus LMG 18311]
 gi|55739328|gb|AAV62969.1| signal recognition particle receptor (docking protein)
           [Streptococcus thermophilus CNRZ1066]
          Length = 463

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 125/320 (39%), Positives = 187/320 (58%), Gaps = 12/320 (3%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           + + K  +E   + R L K     + +L E   +    RR+D+   E+LE++LI SD+GV
Sbjct: 150 LPDSKTETEQEKYNRTLKKTRTGFAARLNEFFANF---RRVDEEFFEQLEEMLILSDVGV 206

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVIL 115
            VA ++ E+L   RY   +   +   D+  LI + L+ + +  +      +F     VIL
Sbjct: 207 NVATQLTEDL---RYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYEEQINFQDGLTVIL 263

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G  VML A DTFR+ A+ QL  W  R     V     
Sbjct: 264 FVGVNGVGKTTSIGKLANKYKQEGKNVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGAEK 323

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L 
Sbjct: 324 ADPASVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLL 383

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            LDA+TGQNAL Q + F  +   TGL++TK+DG+A+GG ++ I     IPV  +G GE I
Sbjct: 384 ALDASTGQNALNQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKI 443

Query: 296 NDLEPFVAKDF-SAVITGCL 314
           +D+  F +++F  +++TG +
Sbjct: 444 DDIGEFHSEEFMQSLLTGLV 463


>gi|241895652|ref|ZP_04782948.1| signal recognition particle-docking protein FtsY [Weissella
           paramesenteroides ATCC 33313]
 gi|241871230|gb|EER74981.1| signal recognition particle-docking protein FtsY [Weissella
           paramesenteroides ATCC 33313]
          Length = 351

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 117/283 (41%), Positives = 174/283 (61%), Gaps = 10/283 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R +D+   ++LE+ LI +D+G   A ++ +EL  +   ++   ++   DVS++I   L+ 
Sbjct: 67  RSVDEDFFDDLEETLIGADVGAQTAMQLTDELRDEVKLQNAKSKQ---DVSKVIVDKLVD 123

Query: 99  L--SKPFNWDFSHR-----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           L  S+  N D S       P VIL+VGVNGVGKTT IGKLS    +AG KV+LAA DTFR
Sbjct: 124 LYRSQGVNEDASMHFAPEGPTVILLVGVNGVGKTTTIGKLSAYYKNAGKKVVLAAADTFR 183

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           + A +QL  W +R     V     +D A++ ++  K A   + D+L +DTAGRL NN  L
Sbjct: 184 AGATEQLVAWGERNDIPVVTGSSKADPASVVFDGVKTAIDTQADILFVDTAGRLQNNVNL 243

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + KM R++ R  P+ P  VL  LDATTGQNA++Q ++F      TG+++TK+DGTA+
Sbjct: 244 MQELSKMKRIITRELPNEPQEVLLTLDATTGQNAVQQAKLFKDSTDVTGIVLTKLDGTAK 303

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           GG ++PI     +PV ++G+GE + D++PF A DF+  + G L
Sbjct: 304 GGIILPIRNELHLPVKWVGLGEKVTDIQPFEANDFAKSLFGSL 346


>gi|149925749|ref|ZP_01914013.1| signal recognition particle-docking protein FtsY(cell division
           protein) [Limnobacter sp. MED105]
 gi|149825866|gb|EDM85074.1| signal recognition particle-docking protein FtsY(cell division
           protein) [Limnobacter sp. MED105]
          Length = 313

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/312 (36%), Positives = 191/312 (61%), Gaps = 13/312 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++  +   W+ +L  G   T    + G+T + +  ++D+   EE+E+ L+ +D G+   +
Sbjct: 2   QIPGQRQDWLGRLKSGLTKT----RSGLTSMFTGEKVDEAFFEEMEERLLLADCGLPATE 57

Query: 65  KIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +++++    Y K ++    V+ VL D    +  +L PL      D + RP +++VVGVN
Sbjct: 58  LLMQKVRDTVYQKGLTRPEDVRLVLRDA---VFDLLRPLETSMGVDRA-RPLIMMVVGVN 113

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+   ++ G  V+LAAGDTFR+AA +QL +WA R++ D + +E GSD  A
Sbjct: 114 GAGKTTSIGKLANHYAEIGYSVLLAAGDTFRAAAREQLDVWAQRSNVDVISAE-GSDPGA 172

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A+++ +   ++   ++I DTAGRL     LM  + K+ +VL +    APH ++ V+DAT
Sbjct: 173 VAFDSVQAGISRNKHIVICDTAGRLPTQLHLMEELKKIKKVLGKAKMDAPHEIVLVVDAT 232

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL+Q++ F+     T L++TK+DGTA+GG L  + ++ ++PV F+GVGE + DL P
Sbjct: 233 NGQNALQQIKAFNDALTLTALVVTKLDGTAKGGILAAMSMSTRVPVAFIGVGEKMGDLRP 292

Query: 301 FVAKDFSAVITG 312
           F  ++F+  + G
Sbjct: 293 FSPREFANALVG 304


>gi|326204789|ref|ZP_08194643.1| signal recognition particle-docking protein FtsY [Clostridium
           papyrosolvens DSM 2782]
 gi|325985001|gb|EGD45843.1| signal recognition particle-docking protein FtsY [Clostridium
           papyrosolvens DSM 2782]
          Length = 302

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/301 (42%), Positives = 191/301 (63%), Gaps = 10/301 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL +G   T   + E I  + +S  ++D+ + +ELE++LI SDIG+    K++E+
Sbjct: 1   MGFFDKLKEGLQKTRKSITEKIDQVLVSFGKVDEELFDELEEILITSDIGIETTMKVIED 60

Query: 70  LLTKRYAKDVSVQRVL--YDVSELIHKMLMP-LSKPFN-WDFSHRPHVILVVGVNGVGKT 125
           L  K   KD   ++++   DV  L+ + L   L K  N  + + +P VI+V+GVNGVGKT
Sbjct: 61  L--KEKVKD---RKIIDPKDVKGLLKETLKEILEKGGNEMNLNTKPSVIIVIGVNGVGKT 115

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGK++      G KV+LAAGDTFR+AAIDQL++WA R   + +  + GSD AA+ ++A
Sbjct: 116 TSIGKIANLYKSQGKKVLLAAGDTFRAAAIDQLEVWAQRVGTEIIMQKEGSDPAAVIFDA 175

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+++  D+LI DTAGRLH    LM  + K+ RVL+R  P A    L VLDATTGQNA
Sbjct: 176 VQAAKSRNADLLICDTAGRLHTKKNLMEELKKVSRVLERELPGADRETLLVLDATTGQNA 235

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F   +  TG+++TK+DGTA+GG ++ I     IPV  +GVGE ++DL+ F A +
Sbjct: 236 IAQAKTFSETSDITGIVLTKLDGTAKGGIVVAIKSELDIPVKLIGVGEQLDDLQKFDAGE 295

Query: 306 F 306
           F
Sbjct: 296 F 296


>gi|329769857|ref|ZP_08261256.1| hypothetical protein HMPREF0433_01020 [Gemella sanguinis M325]
 gi|328837911|gb|EGF87535.1| hypothetical protein HMPREF0433_01020 [Gemella sanguinis M325]
          Length = 357

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/303 (42%), Positives = 183/303 (60%), Gaps = 16/303 (5%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           ES     K  KG   +       + ++ISS R +++   E+LE+LLI+SD+      ++V
Sbjct: 33  ESQFVTEKFKKGLKKSRDNFSNALNNLISSYREINEEFFEDLEELLIQSDVSYNTVLELV 92

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF---------NWDFSHRPHVILVVG 118
           +      Y K+ S ++ L + SEL   ++  L + +         N+       + L VG
Sbjct: 93  D------YLKEESQRQNLKEPSELQDMIIDKLVEVYMEGTVKSELNYAPDKELSIFLFVG 146

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+  +   G KV++AAGDTFR+ AIDQL +WA R+ AD V S  G+D+
Sbjct: 147 VNGVGKTTSIGKLAHNLKKEGKKVLIAAGDTFRAGAIDQLDVWAKRSGADIVKSHEGADS 206

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A + A+AK  DVL+ DTAGRL N   LM  + K++RV+KR  P  PH VL  +D
Sbjct: 207 AAIIFDAIQSAKAKGYDVLLCDTAGRLQNKDHLMKELEKIVRVIKREVPEGPHEVLLTID 266

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN + Q + F  V+  TG+I+TK+DGTA+GG +I I     IPV  +G+GE I+DL
Sbjct: 267 ATTGQNGILQAKTFKEVSDVTGVILTKLDGTAKGGIVIAIKKELDIPVKLVGLGENIDDL 326

Query: 299 EPF 301
           E F
Sbjct: 327 EVF 329


>gi|30263850|ref|NP_846227.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Ames]
 gi|47529275|ref|YP_020624.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49186697|ref|YP_029949.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Sterne]
 gi|49478413|ref|YP_037908.1| recognition particle-docking protein FtsY [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|65321175|ref|ZP_00394134.1| COG0552: Signal recognition particle GTPase [Bacillus anthracis
           str. A2012]
 gi|165873287|ref|ZP_02217895.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0488]
 gi|167636667|ref|ZP_02394957.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0442]
 gi|170689653|ref|ZP_02880834.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0465]
 gi|190565956|ref|ZP_03018875.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035825|ref|ZP_03103227.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           W]
 gi|218904977|ref|YP_002452811.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           AH820]
 gi|227813245|ref|YP_002813254.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. CDC 684]
 gi|228928895|ref|ZP_04091927.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935161|ref|ZP_04097988.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229601511|ref|YP_002868084.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0248]
 gi|254683445|ref|ZP_05147305.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721378|ref|ZP_05183167.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A1055]
 gi|254735885|ref|ZP_05193591.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Western North America USA6153]
 gi|254739518|ref|ZP_05197215.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Kruger B]
 gi|254751174|ref|ZP_05203213.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Vollum]
 gi|254756722|ref|ZP_05208751.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Australia 94]
 gi|30258494|gb|AAP27713.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Ames]
 gi|47504423|gb|AAT33099.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49180624|gb|AAT56000.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Sterne]
 gi|49329969|gb|AAT60615.1| recognition particle-docking protein FtsY [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|164710972|gb|EDR16541.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0488]
 gi|167527918|gb|EDR90734.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0442]
 gi|170666398|gb|EDT17180.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0465]
 gi|190562875|gb|EDV16841.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis Tsiankovskii-I]
 gi|195991474|gb|EDX55440.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           W]
 gi|218540047|gb|ACK92445.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           AH820]
 gi|227002741|gb|ACP12484.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. CDC 684]
 gi|228824526|gb|EEM70331.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830702|gb|EEM76307.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229265919|gb|ACQ47556.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0248]
          Length = 329

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 192/306 (62%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV+ 
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVST 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   R   +V  +I + L+ + K  + DF++  +       V+L
Sbjct: 69  VMELIDQLKEEVQRRNIQDPR---EVQAVISEKLIEIYKG-DSDFTNEVNMQKDGLTVVL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARNVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|255524260|ref|ZP_05391219.1| signal recognition particle-docking protein FtsY [Clostridium
           carboxidivorans P7]
 gi|296185382|ref|ZP_06853792.1| signal recognition particle-docking protein FtsY [Clostridium
           carboxidivorans P7]
 gi|255512085|gb|EET88366.1| signal recognition particle-docking protein FtsY [Clostridium
           carboxidivorans P7]
 gi|296050216|gb|EFG89640.1| signal recognition particle-docking protein FtsY [Clostridium
           carboxidivorans P7]
          Length = 303

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/282 (47%), Positives = 186/282 (65%), Gaps = 10/282 (3%)

Query: 30  EGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD- 87
           E ITD++S +  +DD + EELE++LI +DIGV     I+E+L  K   K +    ++ D 
Sbjct: 22  EKITDMLSGAMTIDDDLYEELEEILITADIGVDTTLYIIEKLKEKIREKKIKDPSLVSDC 81

Query: 88  VSELIHKMLMPLS---KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           + E+I  +L   S   KP     +  P VILV+GVNGVGKTT IGK+S K+ + G KV++
Sbjct: 82  LKEVIVDILGEESSTIKP-----NKTPEVILVIGVNGVGKTTSIGKISAKLKNDGYKVLM 136

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+AAIDQL++W+ R + D +  + GSD AA+ ++A + A+A+K DVLI DTAGR
Sbjct: 137 AAADTFRAAAIDQLEVWSSRAAVDIIKHQEGSDPAAVVFDAVQAAKARKTDVLICDTAGR 196

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LHN   LM  +GK+ RV+ R    A    L VLDATTGQNA+ Q + F  V    G+I+T
Sbjct: 197 LHNKKNLMDELGKINRVIDREFNEAERETLLVLDATTGQNAVEQAKQFMEVCPIGGIILT 256

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           K+DGTA+GG +I I  +  IPV  +GVGEGI+DL+ F  K+F
Sbjct: 257 KLDGTAKGGIVISIKHSLNIPVKLVGVGEGIDDLQEFNPKEF 298


>gi|313632780|gb|EFR99743.1| signal recognition particle-docking protein FtsY [Listeria
           seeligeri FSL N1-067]
          Length = 328

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 192/310 (61%), Gaps = 12/310 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G    
Sbjct: 10  KITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 69

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116
            ++VE L  +   +++S  +   DV E+I + L+ + +  + +     H       VIL 
Sbjct: 70  MELVEALRREVQLRNISDPK---DVQEVIVEKLVDIYQG-DQEEEETLHIEKDGLTVILF 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AI+QL++W +RT  D +    GS
Sbjct: 126 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIEQLEVWGERTGVDVIKQAEGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL V
Sbjct: 186 DPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I    +IPV F+G+GE ++
Sbjct: 246 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELRIPVKFVGLGEQMD 305

Query: 297 DLEPFVAKDF 306
           DL+ F A ++
Sbjct: 306 DLQAFDANEY 315


>gi|308180482|ref|YP_003924610.1| cell division protein FtsY [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045973|gb|ADN98516.1| cell division protein FtsY [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 515

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/274 (43%), Positives = 165/274 (60%), Gaps = 8/274 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-M 97
           R +D+   ++LED LI SD+G   A +I +EL  +   K+   ++ +  V  ++ K++ M
Sbjct: 233 RHVDEAFFDDLEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKEISSV--IVEKLVDM 290

Query: 98  PLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                   D S       P VIL VGVNG GKTT IGK++      G KV+LAA DTFR+
Sbjct: 291 YGEAGEGEDNSIHMAKSGPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRA 350

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI QL++W  R   D V     SD AA+ ++A K+A+A+  DVL +DTAGRL N   LM
Sbjct: 351 GAIQQLQVWGQRDGVDVVAKAEKSDPAAVCFDAVKKAKAEDYDVLFVDTAGRLQNKVNLM 410

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+ RV+ R  P APH VL VLDATTGQNAL Q ++F      +G+++TK+DGTARG
Sbjct: 411 NELEKIKRVITREIPDAPHEVLLVLDATTGQNALNQAKLFKQSTDVSGIVLTKLDGTARG 470

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G ++ I     + V ++G+GE + DL PF A DF
Sbjct: 471 GIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDF 504


>gi|71892395|ref|YP_278129.1| cell division protein [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|71796501|gb|AAZ41252.1| cell division protein [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 308

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 188/306 (61%), Gaps = 5/306 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           + + +   +L +   +T  KL + I ++I ++R+D  + +++++ L+ +DI +   QKI+
Sbjct: 2   NRAYNLFNRLKQSLLNTRKKLGDNIIELIRNKRIDTVILDKIKNQLLIADINIHTTQKII 61

Query: 68  EELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
             L           ++  +D   +E++ K++  + +P  +    +P +IL+VGVNGVGKT
Sbjct: 62  NNLRNYISFNTNCNEQSFHDALRNEML-KIVTLIDRPL-FLQEKKPFIILMVGVNGVGKT 119

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYE 184
           T IGKL+         VMLAAGDT R+AA DQL+I   R+    V ++   SD+A++ ++
Sbjct: 120 TTIGKLAHYYRLKNKTVMLAAGDTCRAAAADQLEILGKRSGCIAVITKNTTSDSASIVFD 179

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K A+ K VD+LIIDTAGRL N    M  + K+IRV+ ++D  APH  + VLDA  GQN
Sbjct: 180 AVKIAKIKSVDLLIIDTAGRLQNKIYAMEELKKIIRVITKIDATAPHETMLVLDANIGQN 239

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           ++ QV MF+     TG++MTK+DG+A+GG L+ I     IP+ ++G+G+ I+DL+PF + 
Sbjct: 240 SVNQVRMFNEAIKITGIVMTKLDGSAKGGTLLSIADHFSIPIRYIGIGQNIDDLQPFKSH 299

Query: 305 DFSAVI 310
           +F   I
Sbjct: 300 NFVEAI 305


>gi|229174513|ref|ZP_04302045.1| Cell division protein ftsY [Bacillus cereus MM3]
 gi|228609073|gb|EEK66363.1| Cell division protein ftsY [Bacillus cereus MM3]
          Length = 329

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 188/303 (62%), Gaps = 6/303 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K   G   T     + + D++   R++D+   EELE++LI +D+GV+ 
Sbjct: 9   EKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVST 68

Query: 63  AQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             +++++L   + +R  +D   VQ V+ +    I+K     S   N     +  V+L VG
Sbjct: 69  VMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSEFSNEINMQ-EDQLTVVLFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD 
Sbjct: 128 VNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+D
Sbjct: 188 AAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVID 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL
Sbjct: 248 ATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307

Query: 299 EPF 301
           + F
Sbjct: 308 QQF 310


>gi|116628140|ref|YP_820759.1| signal recognition particle receptor (docking protein)
           [Streptococcus thermophilus LMD-9]
 gi|116101417|gb|ABJ66563.1| signal recognition particle-docking protein FtsY [Streptococcus
           thermophilus LMD-9]
          Length = 463

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/320 (39%), Positives = 187/320 (58%), Gaps = 12/320 (3%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           + + K  +E   + R L K     + +L E   +    RR+D+   E+LE++LI SD+GV
Sbjct: 150 LPDSKTETEQEKYNRTLKKTRTGFAARLNEFFANF---RRVDEEFFEQLEEILILSDVGV 206

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVIL 115
            VA ++ E+L   RY   +   +   D+  LI + L+ + +  +      +F     VIL
Sbjct: 207 NVATQLTEDL---RYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYEEQINFQDGLTVIL 263

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G  VML A DTFR+ A+ QL  W  R     V     
Sbjct: 264 FVGVNGVGKTTSIGKLANKYKQEGKNVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGAEK 323

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L 
Sbjct: 324 ADPASVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLL 383

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            LDA+TGQNAL Q + F  +   TGL++TK+DG+A+GG ++ I     IPV  +G GE I
Sbjct: 384 ALDASTGQNALNQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKI 443

Query: 296 NDLEPFVAKDF-SAVITGCL 314
           +D+  F +++F  +++TG +
Sbjct: 444 DDIGEFHSEEFMQSLLTGLV 463


>gi|296331170|ref|ZP_06873644.1| signal recognition particle-docking protein FtsY [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305674326|ref|YP_003865998.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151814|gb|EFG92689.1| signal recognition particle-docking protein FtsY [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412570|gb|ADM37689.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 329

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/305 (40%), Positives = 187/305 (61%), Gaps = 10/305 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+  ++ S   K   G   T    +  + D++S  R++D+   EELE++LI +D+G   
Sbjct: 9   EKITKQTDSVSEKFKDGLEKTRSSFQNKVNDLVSRYRKVDEDFFEELEEVLISADVGFTT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILV 116
             ++++EL  K+  K  ++Q  + +V  +I + L+ +    +   S       R +VIL+
Sbjct: 69  VMELIDEL--KKEVKRRNIQDPM-EVQSVISEKLVEIYNSGDEQISELNIQDGRLNVILL 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ K+   G  V+LAAGDTFR+ AI+QL++W +RT    +    GS
Sbjct: 126 VGVNGVGKTTTIGKLAHKLKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQTAGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A   A+A+  DVLI DTAGRL N   LM  + K+ RV++R  P APH VL  
Sbjct: 186 DPAAVIYDAVHAAKARNADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLA 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I    +IPV  +G+GE ++
Sbjct: 246 LDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELQIPVKLVGLGEKVD 305

Query: 297 DLEPF 301
           DL+ F
Sbjct: 306 DLQEF 310


>gi|317405462|gb|EFV85772.1| cell division protein [Achromobacter xylosoxidans C54]
          Length = 328

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 181/304 (59%), Gaps = 11/304 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L +G + T     + I  I    ++D+ + EELE  LI +D G+   +K++  L 
Sbjct: 28  SWLSRLKQGLSRTG----QSIGGIFVGVKVDENLFEELESALIMADAGLEATEKLLTALR 83

Query: 72  TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +    +V   + +L+   L PL + F+   +  P V+++ GVNG GKTT IGK
Sbjct: 84  ARVKKERIEDPAKVKAALRQLLADHLRPLERAFDLKRAQ-PLVVMIAGVNGAGKTTSIGK 142

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G  V+LAAGDTFR+AA +QL  W  R +   V S+ G D AA+A+++    +
Sbjct: 143 LAHTFQRQGASVLLAAGDTFRAAAREQLIEWGSRNNVT-VISQDGGDPAAVAFDSVNAGR 201

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ + V+++DTAGRL     LM  + K+ RV+ + DP APH VL V+D  TGQNAL Q+ 
Sbjct: 202 ARGMGVVMVDTAGRLPTQLHLMEELKKIRRVIGKADPAAPHEVLLVVDGNTGQNALAQIR 261

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAKDF 306
            F A    TGL++TK+DGTA+GG L  +    +    IPVY++GVGE + DL+PFVA +F
Sbjct: 262 AFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGESLEDLQPFVADEF 321

Query: 307 SAVI 310
           +  +
Sbjct: 322 AGAL 325


>gi|255994065|ref|ZP_05427200.1| signal recognition particle-docking protein FtsY [Eubacterium
           saphenum ATCC 49989]
 gi|255993733|gb|EEU03822.1| signal recognition particle-docking protein FtsY [Eubacterium
           saphenum ATCC 49989]
          Length = 293

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/293 (44%), Positives = 180/293 (61%), Gaps = 13/293 (4%)

Query: 19  KGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           +GF S    L E + DIISS+  +DD + EEL D LI +DIGV  A++I+E  L K   K
Sbjct: 6   RGFFSG---LSERLGDIISSKPAVDDDMLEELTDELIMADIGVDTAERIIE--LLKSSIK 60

Query: 78  D---VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           D    + + V Y +S+ I K++         D S +  VILV+GVNG GKTT I K++  
Sbjct: 61  DEGLTTPEEVKYKLSKTIEKIV---DVEGTMDLSGKS-VILVIGVNGSGKTTGIAKMANV 116

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
                 KV+LAAGDTFR+AA  QL  WAD      V  + G+D +A+ ++A   ++A+ V
Sbjct: 117 FKQHDKKVLLAAGDTFRAAAAKQLSHWADAVGVSVVKHDEGADPSAVVFDAISASKARNV 176

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D LI+DTAGRL N   LM  + KM RV++R  P A    + VLDA TG+NAL QVE F  
Sbjct: 177 DTLIVDTAGRLQNKKNLMDELSKMKRVVQREYPEAKLYTMLVLDANTGKNALSQVEKFSE 236

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           V+   G+++TKMDGTA+GG ++ I   +KIPV ++G+GE   D+  F A++FS
Sbjct: 237 VSAIDGIMLTKMDGTAKGGIVVTIADVYKIPVIYMGIGEKKEDICEFDAREFS 289


>gi|254556539|ref|YP_003062956.1| signal recognition particle receptor FtsY [Lactobacillus plantarum
           JDM1]
 gi|254045466|gb|ACT62259.1| signal recognition particle receptor FtsY [Lactobacillus plantarum
           JDM1]
          Length = 515

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/274 (43%), Positives = 165/274 (60%), Gaps = 8/274 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-M 97
           R +D+   ++LED LI SD+G   A +I +EL  +   K+   ++ +  V  ++ K++ M
Sbjct: 233 RHVDEAFFDDLEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKEISSV--IVEKLVDM 290

Query: 98  PLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                   D S       P VIL VGVNG GKTT IGK++      G KV+LAA DTFR+
Sbjct: 291 YGEAGEGEDNSIHMAKSGPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRA 350

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI QL++W  R   D V     SD AA+ ++A K+A+A+  DVL +DTAGRL N   LM
Sbjct: 351 GAIQQLQVWGQRDGVDVVAKAEKSDPAAVCFDAVKKAKAEDYDVLFVDTAGRLQNKVNLM 410

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+ RV+ R  P APH VL VLDATTGQNAL Q ++F      +G+++TK+DGTARG
Sbjct: 411 NELEKIKRVITREIPDAPHEVLLVLDATTGQNALNQAKLFKQSTDVSGIVLTKLDGTARG 470

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G ++ I     + V ++G+GE + DL PF A DF
Sbjct: 471 GIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDF 504


>gi|300767268|ref|ZP_07077180.1| cell division protein FtsY [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495087|gb|EFK30243.1| cell division protein FtsY [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 512

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/274 (43%), Positives = 165/274 (60%), Gaps = 8/274 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-M 97
           R +D+   ++LED LI SD+G   A +I +EL  +   K+   ++ +  V  ++ K++ M
Sbjct: 230 RHVDEAFFDDLEDTLIESDVGYETAMRISDELRDEVKLKNAKSKKEISSV--IVEKLVDM 287

Query: 98  PLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                   D S       P VIL VGVNG GKTT IGK++      G KV+LAA DTFR+
Sbjct: 288 YGEAGEGEDNSIHMAKSGPTVILFVGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRA 347

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI QL++W  R   D V     SD AA+ ++A K+A+A+  DVL +DTAGRL N   LM
Sbjct: 348 GAIQQLQVWGQRDGVDVVAKAEKSDPAAVCFDAVKKAKAEDYDVLFVDTAGRLQNKVNLM 407

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+ RV+ R  P APH VL VLDATTGQNAL Q ++F      +G+++TK+DGTARG
Sbjct: 408 NELEKIKRVITREIPDAPHEVLLVLDATTGQNALNQAKLFKQSTDVSGIVLTKLDGTARG 467

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G ++ I     + V ++G+GE + DL PF A DF
Sbjct: 468 GIVLAIRNELHLAVKYVGLGEKVTDLRPFNANDF 501


>gi|153003590|ref|YP_001377915.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           sp. Fw109-5]
 gi|152027163|gb|ABS24931.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           sp. Fw109-5]
          Length = 465

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 117/272 (43%), Positives = 170/272 (62%), Gaps = 7/272 (2%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM-- 97
           +DD V  +LE++L  +DIGV  A +++E    +   K++S    L D + E I ++L   
Sbjct: 189 VDDAVLADLEEVLFTADIGVRTATRLLESARERVRRKELSDPERLKDALREEIARILALD 248

Query: 98  ---PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
                ++P       RP V++VVGVNG GKTT IGKL+ K+   G +V+L AGDTFR+AA
Sbjct: 249 GQPAAARPLELG-PARPWVVMVVGVNGSGKTTTIGKLASKLQAEGKRVLLGAGDTFRAAA 307

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +QL+IWA+R  A  V  + G+D A++ +EA ++      DV++ DTAGRLH  + LM  
Sbjct: 308 GEQLEIWAERVGAPIVRGKEGADPASVCFEAVQRGAQDGADVVLCDTAGRLHTKAPLMEE 367

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+ RV+ +    APH VL VLD+T GQNA+ Q   FH   G TG+++TK+DGTA+GG 
Sbjct: 368 LKKVKRVIGKAVDGAPHEVLLVLDSTNGQNAIAQARQFHEALGVTGIVLTKIDGTAKGGV 427

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +I I     IPV ++GVGE + DL+ FV  +F
Sbjct: 428 IIGICDELGIPVRYVGVGESVADLKAFVPAEF 459


>gi|312622588|ref|YP_004024201.1| signal recognition particle-docking protein ftsy
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203055|gb|ADQ46382.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 301

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/299 (42%), Positives = 189/299 (63%), Gaps = 8/299 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     E +  ++ S R++DD + EELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFFDRLKEGLSKTKKNFTEKVESLLKSFRQIDDDLFEELEEVLVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           L  +     V  +R+L    V EL+ + ++ +    N      P +IL+VGVNGVGKTT 
Sbjct: 61  LKER-----VKKERILDPQIVKELLKEEMLNIINLENKLSEKYPLIILMVGVNGVGKTTS 115

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGK++  +   G KV++AA DTFR+AA +QL+IWA R   D +    G+D AA+ ++  +
Sbjct: 116 IGKIANLLKSNGKKVLVAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGADPAAVVFDGIQ 175

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQNAL 
Sbjct: 176 AMRARKADVLIVDTAGRLHTKKNLIEELKKINRVINQQMPEAAKETLLVIDATTGQNALN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q + F+     +G+++TK+DGTA+GG +I I    KIPV F+GVGE I+DL+ F AK+F
Sbjct: 236 QAKEFNQAVNISGIVLTKLDGTAKGGIVISIYDELKIPVKFVGVGEKIDDLQYFNAKEF 294


>gi|257463638|ref|ZP_05628029.1| Signal recognition particle receptor FtsY [Fusobacterium sp. D12]
          Length = 347

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 181/299 (60%), Gaps = 10/299 (3%)

Query: 21  FASTSLKL---KEGI----TDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           FAS   KL   +EG+      + SSR+ +DD + EELE+LL++SDIG+ + QKIV +L  
Sbjct: 48  FASLHEKLFQTREGLFSKMKSLFSSRKVIDDAMYEELEELLVQSDIGLEMTQKIVRDLEG 107

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               + V     +Y V   ++   L+   + F  +      VIL+VGVNGVGKTT IGK+
Sbjct: 108 AVKKQGVKNPEEVYTVLKTVMEDYLIESEEKFPRE-EQNLQVILIVGVNGVGKTTTIGKI 166

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G KV+L AGDTFR+AA++QL+ WA R+ A+ V  + G+D  ++ ++   +A+ 
Sbjct: 167 AAKLKKEGKKVILGAGDTFRAAAVEQLEEWARRSEAELVKGKEGADPGSVVFDTLSKAEE 226

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV IIDTAGRLHN   LM  + K+  V+++      +  + V+D TTGQNAL Q + 
Sbjct: 227 IGADVAIIDTAGRLHNKGYLMKELEKINNVVRKKIGDRYYESILVIDGTTGQNALNQAKE 286

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           F+ V   TG I+TK+DGTA+GG +  +    + P+ F+GVGE I DL  F  KDF A +
Sbjct: 287 FNEVTRLTGFIITKLDGTAKGGIVFSLSELLQKPIRFIGVGEKIEDLRKFSKKDFIAAL 345


>gi|317061190|ref|ZP_07925675.1| cell division protein ftsY [Fusobacterium sp. D12]
 gi|313686866|gb|EFS23701.1| cell division protein ftsY [Fusobacterium sp. D12]
          Length = 350

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 181/299 (60%), Gaps = 10/299 (3%)

Query: 21  FASTSLKL---KEGI----TDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           FAS   KL   +EG+      + SSR+ +DD + EELE+LL++SDIG+ + QKIV +L  
Sbjct: 51  FASLHEKLFQTREGLFSKMKSLFSSRKVIDDAMYEELEELLVQSDIGLEMTQKIVRDLEG 110

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               + V     +Y V   ++   L+   + F  +      VIL+VGVNGVGKTT IGK+
Sbjct: 111 AVKKQGVKNPEEVYTVLKTVMEDYLIESEEKFPRE-EQNLQVILIVGVNGVGKTTTIGKI 169

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G KV+L AGDTFR+AA++QL+ WA R+ A+ V  + G+D  ++ ++   +A+ 
Sbjct: 170 AAKLKKEGKKVILGAGDTFRAAAVEQLEEWARRSEAELVKGKEGADPGSVVFDTLSKAEE 229

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV IIDTAGRLHN   LM  + K+  V+++      +  + V+D TTGQNAL Q + 
Sbjct: 230 IGADVAIIDTAGRLHNKGYLMKELEKINNVVRKKIGDRYYESILVIDGTTGQNALNQAKE 289

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           F+ V   TG I+TK+DGTA+GG +  +    + P+ F+GVGE I DL  F  KDF A +
Sbjct: 290 FNEVTRLTGFIITKLDGTAKGGIVFSLSELLQKPIRFIGVGEKIEDLRKFSKKDFIAAL 348


>gi|33594352|ref|NP_881996.1| cell division protein [Bordetella pertussis Tohama I]
 gi|33564427|emb|CAE43736.1| cell division protein [Bordetella pertussis Tohama I]
 gi|332383763|gb|AEE68610.1| cell division protein [Bordetella pertussis CS]
          Length = 369

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 182/304 (59%), Gaps = 11/304 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L +G + T     + I  +    ++D+ + EELE  LI +D G+   +K++  L 
Sbjct: 69  SWLSRLKQGLSRTG----QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALR 124

Query: 72  TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +    +V   + +L+   L PL + F+   +  P V+++ GVNG GKTT IGK
Sbjct: 125 ARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRAQ-PLVVMIAGVNGAGKTTSIGK 183

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G  V+LAAGDTFR+AA +QL  W  R +   V S+ G D AA+A+++    +
Sbjct: 184 LAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVT-VISQDGGDPAAVAFDSVNAGR 242

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ V V+++DTAGRL     LM  + K+ RV+ + +  APH VL V+D  TGQNAL Q+ 
Sbjct: 243 ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIR 302

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAKDF 306
            F A    TGL++TK+DGTA+GG L  +    +    IPVY++GVGEG+ DL+PFVA +F
Sbjct: 303 AFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEF 362

Query: 307 SAVI 310
           +A +
Sbjct: 363 AAAL 366


>gi|315031782|gb|EFT43714.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0017]
          Length = 442

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431


>gi|300854472|ref|YP_003779456.1| putative cell division protein [Clostridium ljungdahlii DSM 13528]
 gi|300434587|gb|ADK14354.1| predicted cell division protein [Clostridium ljungdahlii DSM 13528]
          Length = 303

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 193/297 (64%), Gaps = 6/297 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  KL  G   T   L   I+D+++S   +DD + EELE++LI +DIGV     I+++L 
Sbjct: 5   FFDKLKNGLEKTKSNLTGKISDMLTSAVSIDDDLYEELEEILITADIGVETTTYIIDKLK 64

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            K   + +    +   +++ + ++++ +   +  + +    P +ILV+GVNGVGKTT IG
Sbjct: 65  EKIKEQKIKDPSL---INQCLKEVIIDILGDEKNSIEPEKTPEIILVIGVNGVGKTTSIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+S K+ D+G KV++AA DTFR+AAIDQL++W+ R   D +  + GSD AA+ ++A + A
Sbjct: 122 KMSSKLKDSGNKVIMAAADTFRAAAIDQLEVWSRRAGVDIIKHQEGSDPAAVIFDAIQAA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K +VLI DTAGRLHN   LM  + K+ RV++R    A    L VLDATTGQNA++Q 
Sbjct: 182 KARKAEVLICDTAGRLHNKKNLMDELSKINRVIEREYKEAFKQTLLVLDATTGQNAVQQA 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F  V    G+I+TK+DGTA+GG +I I  +  IPV  +GVGEGI+DL+ F ++DF
Sbjct: 242 KQFTEVCPIDGIILTKLDGTAKGGIVISIKHSLDIPVKLIGVGEGIDDLQEFCSRDF 298


>gi|257866579|ref|ZP_05646232.1| signal recognition particle protein [Enterococcus casseliflavus
           EC30]
 gi|257872905|ref|ZP_05652558.1| signal recognition particle protein [Enterococcus casseliflavus
           EC10]
 gi|257800537|gb|EEV29565.1| signal recognition particle protein [Enterococcus casseliflavus
           EC30]
 gi|257807069|gb|EEV35891.1| signal recognition particle protein [Enterococcus casseliflavus
           EC10]
          Length = 429

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/307 (41%), Positives = 186/307 (60%), Gaps = 10/307 (3%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQK 65
           A E+ S   K TKG   +     + + ++ ++ R +D+   EE+E+ LI +D+G   A K
Sbjct: 115 APETESVQDKYTKGLTKSRKTFGQRMNELFANFRTVDEDFFEEVEETLIGADVGFDAAMK 174

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILVVGV 119
           I + L  +   ++V   +   DV  +I + L+ L       +    +      VIL VGV
Sbjct: 175 IADALRQEVKLRNV---KKTADVQNVIIEKLVDLYGEAGVGEVNELNMQSGLTVILFVGV 231

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KV+LAA DTFR+ AIDQL +W +R   + V    G D A
Sbjct: 232 NGVGKTTSIGKLAHQFKAEGKKVLLAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPA 291

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A ++A+ +  DVL++DTAGRL N   LM  + K+ R+++R+DP APH VL VLDA
Sbjct: 292 AVVFDAMERAKRENADVLLVDTAGRLQNKVNLMNELEKIKRIIQRVDPTAPHEVLLVLDA 351

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F      +GL++TK+DGTA+GG ++ I    ++PV  +G+GEGINDLE
Sbjct: 352 TTGQNAMNQAKQFKETTDVSGLVLTKLDGTAKGGIVLAIRNELRLPVKLVGLGEGINDLE 411

Query: 300 PFVAKDF 306
           PF   +F
Sbjct: 412 PFDPNEF 418


>gi|15895029|ref|NP_348378.1| Signal recognition particle GTPase, FtsY [Clostridium
           acetobutylicum ATCC 824]
 gi|15024721|gb|AAK79718.1|AE007684_6 Signal recognition particle GTPase, FtsY [Clostridium
           acetobutylicum ATCC 824]
          Length = 303

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/304 (43%), Positives = 188/304 (61%), Gaps = 18/304 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           ++  KL  G + T   L   I+D+++S   +DD + +ELE++LI SDIGV  +  I+++L
Sbjct: 4   NFFDKLKNGLSKTKNNLTSKISDVLTSTVTIDDDLYDELEEILITSDIGVETSLYIIDKL 63

Query: 71  ---LTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              + +   KD S+     + V+ D+       LMP            P  ILVVGVNGV
Sbjct: 64  KEKIKENKVKDPSLVNDCLKEVIKDILGDKKGSLMP---------KQIPETILVVGVNGV 114

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGK+S ++    LKV++AA DTFR+AAIDQL++W+ R + D +  + GSD AA+ 
Sbjct: 115 GKTTSIGKISSRLKSQNLKVIMAAADTFRAAAIDQLEVWSKRANVDIIKHQEGSDPAAVV 174

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+K DVLI DTAGRLHN   LM  + K+ R++ R    +    L VLDATTG
Sbjct: 175 FDAIEAAKARKADVLICDTAGRLHNKKNLMNELEKINRIIDREFSQSTRRTLLVLDATTG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q + F  V    G+++TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F 
Sbjct: 235 QNAVIQAKQFMEVCKVDGIVLTKLDGTAKGGIVIFIKHQLDIPVEFVGVGEGIDDLQEFN 294

Query: 303 AKDF 306
             DF
Sbjct: 295 PSDF 298


>gi|319940798|ref|ZP_08015137.1| signal recognition particle-docking protein FtsY [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805680|gb|EFW02461.1| signal recognition particle-docking protein FtsY [Sutterella
           wadsworthensis 3_1_45B]
          Length = 329

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 179/304 (58%), Gaps = 10/304 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W  +L  G + T +     I  + S   +D+   EELE  LI +D+GV     I+E L +
Sbjct: 28  WFSRLKNGLSRTRVN----IVGLFSGGVVDEDFLEELEFALISADVGVETTTHILERLRS 83

Query: 73  KRYAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               + +  Q  V   + + +  +L P     N D   +P VI++ GVNG GKTT IGKL
Sbjct: 84  DIKLQGLKTQEEVKLALRDELVTILKPAEGVLNVD-QAKPCVIMMCGVNGAGKTTSIGKL 142

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+ +D G  V+LAAGDTFR+AA +QL +W +R   + V ++ G D AA+ ++A    +A
Sbjct: 143 AKRFADNGKSVLLAAGDTFRAAAREQLAVWGERNRVE-VIAQTGGDPAAVVFDAVNAGRA 201

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DV+I DTAGRL   + LM  + ++ R  ++    APH V+ V+D T GQNAL QV  
Sbjct: 202 RSMDVVIADTAGRLPTQTNLMEELSRIRRAQEKALEGAPHEVILVVDGTNGQNALAQVAA 261

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVT---HKIPVYFLGVGEGINDLEPFVAKDFSA 308
           F   A  TGLI+TK+DGTA+GG L  I       ++P+Y++GVGE + DL+PF A++F+ 
Sbjct: 262 FDTYAHLTGLIVTKLDGTAKGGVLAAITAARGERRLPIYYIGVGEKLEDLQPFSAEEFAN 321

Query: 309 VITG 312
            + G
Sbjct: 322 ALVG 325


>gi|160892684|ref|ZP_02073474.1| hypothetical protein CLOL250_00214 [Clostridium sp. L2-50]
 gi|156865725|gb|EDO59156.1| hypothetical protein CLOL250_00214 [Clostridium sp. L2-50]
          Length = 324

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/300 (40%), Positives = 182/300 (60%), Gaps = 9/300 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E   + ++L +G + T   + +  + +  +  +DD   EELE+  I +D+G    +K
Sbjct: 1   MAEEKKGFFKRLKEGLSKTRNSIVDSFSSVFGASHIDDDFYEELEETFIMADMGYETTEK 60

Query: 66  IVEELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           ++E L  +    R  +  + + ++ ++  +  +M++  S    +DF  +  VILV+GVNG
Sbjct: 61  VIENLKERVKEARIKEPAACKELIINI--IRDQMMVDESA---YDFEKKKSVILVIGVNG 115

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ +   +G KV++AA DTFR+AAIDQLK WADR   + +    G+D AA+
Sbjct: 116 VGKTTTIGKLAAQYKKSGKKVLIAAADTFRAAAIDQLKTWADRAGVEMISHNEGADPAAV 175

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A   A+A+  D+L+IDTAGRLHN   LM  + KM R++ R  P A    L VLD TT
Sbjct: 176 VYDAVSAAKARNTDILLIDTAGRLHNKKNLMDELAKMRRIISRDYPDANVESLIVLDGTT 235

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q   F  V    G+++TK+DGTA+GG  I I     +PV F+G+GE I+DL+ F
Sbjct: 236 GQNALEQARQFSNVTEIDGIVITKLDGTAKGGIAIAIQAELNVPVKFIGIGEKIDDLQRF 295


>gi|295696068|ref|YP_003589306.1| signal recognition particle-docking protein FtsY [Bacillus tusciae
           DSM 2912]
 gi|295411670|gb|ADG06162.1| signal recognition particle-docking protein FtsY [Bacillus tusciae
           DSM 2912]
          Length = 313

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/282 (46%), Positives = 179/282 (63%), Gaps = 6/282 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           +   RRLDD + +ELE+LLI +D+GV  A + VE+L  ++ A++  V+        L   
Sbjct: 26  VTGRRRLDDALFDELEELLILADVGVDQAVEWVEDL--RKQARERGVREAGELRPLLREL 83

Query: 95  MLMPL---SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +L  L   S P          V+LVVGVNG GKTT +GKL+ +++  G KV+LAAGDTFR
Sbjct: 84  LLDVLGRDSAPLQI-HPGSLSVVLVVGVNGAGKTTTLGKLAHRLTGEGRKVLLAAGDTFR 142

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           + AI+QL +W  R   D +  + GSD AA+ ++A +  +++ VDV++ DTAGRLHN + L
Sbjct: 143 AGAIEQLHVWGSRAQVDVIRQQQGSDPAAVVFDAIQAGRSRGVDVVLCDTAGRLHNKTNL 202

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           MA + K+ RV  R    APH VL V+DATTGQNAL Q E+F   AG TG+++TK+DGTA+
Sbjct: 203 MAELEKIRRVAAREVDGAPHEVLLVIDATTGQNALTQAELFSRSAGVTGVVLTKLDGTAK 262

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           GG  + I     IPV F+GVGEGI DLEPF  + F   + G 
Sbjct: 263 GGMALTIRRRLGIPVKFVGVGEGIEDLEPFDPEIFVDALLGT 304


>gi|33595534|ref|NP_883177.1| cell division protein [Bordetella parapertussis 12822]
 gi|33565612|emb|CAE40258.1| cell division protein [Bordetella parapertussis]
          Length = 355

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 181/304 (59%), Gaps = 11/304 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L +G + T     + I  +    ++D+ + EELE  LI +D G+   +K++  L 
Sbjct: 55  SWLSRLKQGLSRTG----QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALR 110

Query: 72  TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +    +V   + +L+   L PL + F+   +  P V+++ GVNG GKTT IGK
Sbjct: 111 ARVKKERIDDPAQVKTALRQLLADHLWPLERSFDLGRAQ-PLVVMIAGVNGAGKTTSIGK 169

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G  V+LAAGDTFR+AA +QL  W  R +   V S+ G D AA+A+++    +
Sbjct: 170 LAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVT-VISQDGGDPAAVAFDSVNAGR 228

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ V V+++DTAGRL     LM  + K+ RV+ + +  APH VL V+D  TGQNAL Q+ 
Sbjct: 229 ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIR 288

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVV----THKIPVYFLGVGEGINDLEPFVAKDF 306
            F A    TGL++TK+DGTA+GG L  +         IPVY++GVGEG+ DL+PFVA +F
Sbjct: 289 AFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEF 348

Query: 307 SAVI 310
           +A +
Sbjct: 349 AAAL 352


>gi|257876183|ref|ZP_05655836.1| signal recognition particle protein [Enterococcus casseliflavus
           EC20]
 gi|257810349|gb|EEV39169.1| signal recognition particle protein [Enterococcus casseliflavus
           EC20]
          Length = 430

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/307 (41%), Positives = 186/307 (60%), Gaps = 10/307 (3%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQK 65
           A E+ S   K TKG   +     + + ++ ++ R +D+   EE+E+ LI +D+G   A K
Sbjct: 116 APETESVQDKYTKGLTKSRKTFGQRMNELFANFRTVDEDFFEEVEETLIGADVGFDAAMK 175

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILVVGV 119
           I + L  +   ++V   +   DV  +I + L+ L       +    +      VIL VGV
Sbjct: 176 IADALRQEVKLRNV---KKTADVQNVIIEKLVDLYGEAGVGEVNELNMQSGLTVILFVGV 232

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KV+LAA DTFR+ AIDQL +W +R   + V    G D A
Sbjct: 233 NGVGKTTSIGKLAHQFKAEGKKVLLAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPA 292

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A ++A+ +  DVL++DTAGRL N   LM  + K+ R+++R+DP APH VL VLDA
Sbjct: 293 AVVFDAMERAKRENADVLLVDTAGRLQNKVNLMNELEKIKRIIQRVDPTAPHEVLLVLDA 352

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F      +GL++TK+DGTA+GG ++ I    ++PV  +G+GEGINDLE
Sbjct: 353 TTGQNAMNQAKQFKETTDVSGLVLTKLDGTAKGGIVLAIRNELRLPVKLVGLGEGINDLE 412

Query: 300 PFVAKDF 306
           PF   +F
Sbjct: 413 PFDPNEF 419


>gi|227517301|ref|ZP_03947350.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0104]
 gi|227075308|gb|EEI13271.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0104]
          Length = 442

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431


>gi|322385043|ref|ZP_08058693.1| cell division protein FtsY [Streptococcus cristatus ATCC 51100]
 gi|321270953|gb|EFX53863.1| cell division protein FtsY [Streptococcus cristatus ATCC 51100]
          Length = 498

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 118/273 (43%), Positives = 169/273 (61%), Gaps = 8/273 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R +D+   E+LE+LLI SD+GV VA  + E+L   RY   +   +    + +LI + L+ 
Sbjct: 220 RSVDEDFFEDLEELLITSDVGVQVASNLTEDL---RYEARLENAKKPDALRQLIIEKLVD 276

Query: 99  LSKP---FNW--DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           + +    FN   +F +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ 
Sbjct: 277 IYEKDGRFNEKINFQNGLTVMLFVGVNGVGKTTSIGKLAYKYKQEGKKVMLVAADTFRAG 336

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A+ QL  W  R     V     SD A++ ++  ++A+A+ VD+L+IDTAGRL N   LMA
Sbjct: 337 AVAQLAEWGRRVDVPVVTGPEKSDPASVVFDGLERAKAENVDILMIDTAGRLQNKDNLMA 396

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ R++KR+DP APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG
Sbjct: 397 ELEKIGRIIKRVDPAAPHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGG 456

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            ++ I     IPV  +G GE I+D+  F +++F
Sbjct: 457 VVLAIRQELDIPVKLIGFGEKIDDIGEFNSENF 489


>gi|124005298|ref|ZP_01690139.1| signal recognition particle-docking protein FtsY [Microscilla
           marina ATCC 23134]
 gi|123989120|gb|EAY28698.1| signal recognition particle-docking protein FtsY [Microscilla
           marina ATCC 23134]
          Length = 319

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/277 (41%), Positives = 175/277 (63%), Gaps = 6/277 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYD-VS 89
           ++   ++DD V ++LE++LI SD+GV    KI+E +  +R  K+      +  +L D ++
Sbjct: 34  LVGKSKVDDEVLDDLEEVLISSDVGVDTTIKIIERI-EERVKKEKFFANELDGILKDEIA 92

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           +L+ +      + F+   + +P+VI+VVGVNGVGKTT IGKL+ +   AG +V+L A DT
Sbjct: 93  DLLAESNQDNVEEFDLPKNTKPYVIMVVGVNGVGKTTTIGKLANQFKLAGKEVVLGAADT 152

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AA+DQLK+W +R     +   +  D A++A++A ++      DV+I+DTAGRL    
Sbjct: 153 FRAAAVDQLKVWGERVGVPVIELGMNKDPASVAFDAVEKGVEMNADVVIVDTAGRLQTKV 212

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + K+ RV+ ++ P APH VL VLD +TGQNA+ Q + F      T L +TK+DGT
Sbjct: 213 PLMNELSKIKRVMSKVIPEAPHEVLLVLDGSTGQNAISQAKAFTEATEVTALAITKLDGT 272

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A+GG +I I    K+PV ++GVGEGI DL+ F   +F
Sbjct: 273 AKGGVVIGISDQFKVPVKYIGVGEGIEDLQIFNKHEF 309


>gi|33599932|ref|NP_887492.1| cell division protein [Bordetella bronchiseptica RB50]
 gi|33567529|emb|CAE31442.1| cell division protein [Bordetella bronchiseptica RB50]
          Length = 355

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 181/304 (59%), Gaps = 11/304 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L +G + T     + I  +    ++D+ + EELE  LI +D G+   +K++  L 
Sbjct: 55  SWLSRLKQGLSRTG----QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALR 110

Query: 72  TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +    +V   + +L+   L PL + F+   +  P V+++ GVNG GKTT IGK
Sbjct: 111 ARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRAQ-PLVVMIAGVNGAGKTTSIGK 169

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G  V+LAAGDTFR+AA +QL  W  R +   V S+ G D AA+A+++    +
Sbjct: 170 LAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVT-VISQDGGDPAAVAFDSVNAGR 228

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ V V+++DTAGRL     LM  + K+ RV+ + +  APH VL V+D  TGQNAL Q+ 
Sbjct: 229 ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIR 288

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVV----THKIPVYFLGVGEGINDLEPFVAKDF 306
            F A    TGL++TK+DGTA+GG L  +         IPVY++GVGEG+ DL+PFVA +F
Sbjct: 289 AFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEF 348

Query: 307 SAVI 310
           +A +
Sbjct: 349 AAAL 352


>gi|288553092|ref|YP_003425027.1| signal recognition particle-docking protein FtsY [Bacillus
           pseudofirmus OF4]
 gi|288544252|gb|ADC48135.1| signal recognition particle-docking protein FtsY [Bacillus
           pseudofirmus OF4]
          Length = 333

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/260 (43%), Positives = 166/260 (63%), Gaps = 8/260 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           +LI +D+GV     ++++L  +   +++   +   D+  +I + L  L +    D +   
Sbjct: 58  ILIGADVGVNTVMTLIDDLKDEVRIRNIKDTK---DIQPVISEKLAELLQKEEEDAALNI 114

Query: 112 H-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
                 VILVVGVNGVGKTT IGKL+  +   G  VMLAAGDTFR+ AI+QL++W +R  
Sbjct: 115 QTDGMTVILVVGVNGVGKTTTIGKLANHLKQDGKSVMLAAGDTFRAGAIEQLEVWGERVG 174

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +  + GSD AA+ Y+A + A+++ VDVLI DTAGRL N   LM  + K+ RV++R  
Sbjct: 175 VDVIKQQEGSDPAAVMYDALQAAKSRGVDVLICDTAGRLQNKVNLMNELEKVKRVIEREV 234

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL VLDATTGQNA+ Q + F      +G+++TK+DGTA+GG ++ I     IPV
Sbjct: 235 PSAPHEVLLVLDATTGQNAMSQAKTFGKSTDVSGIVLTKLDGTAKGGIVLAIRHELDIPV 294

Query: 287 YFLGVGEGINDLEPFVAKDF 306
            F+G+GE ++DL+PF A+ F
Sbjct: 295 KFVGLGEKVDDLQPFNAEQF 314


>gi|160938004|ref|ZP_02085361.1| hypothetical protein CLOBOL_02897 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438998|gb|EDP16753.1| hypothetical protein CLOBOL_02897 [Clostridium bolteae ATCC
           BAA-613]
          Length = 317

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/298 (43%), Positives = 181/298 (60%), Gaps = 8/298 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G A T   +  GI  I S    +DD   EE+E+ LI  D+G+     IVE+L 
Sbjct: 8   FFGRLVEGLAKTRSNIVSGIDSIFSGFSAIDDDFYEEIEETLIMGDLGIQTTMSIVEDLR 67

Query: 72  TKRYAKDVSVQRVLYDVSELIH---KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            K   + +   R   +  EL+    K  M L +   ++F HR  V+LV+GVNGVGKTT +
Sbjct: 68  KKVKEQHI---REPEECKELLINSIKEQMDLGEN-AYEFEHRKSVVLVIGVNGVGKTTSV 123

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ ++ D G +V+LAA DTFR+AAI+QL  WA R   + +  + GSD AA+ Y+A   
Sbjct: 124 GKLAGQLKDDGRRVILAAADTFRAAAIEQLTEWASRAGVELIAQQEGSDPAAVIYDAVAA 183

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+++K DVLI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQNAL Q
Sbjct: 184 AKSRKADVLICDTAGRLHNKKNLMEELKKINRIIDKEYPDAYRETLVVLDGTTGQNALAQ 243

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              F  VA  TG+I+TK+DGTA+GG  + I     IPV ++G+GE I+DL+ F A DF
Sbjct: 244 ARQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYIGIGEKIDDLQKFNADDF 301


>gi|315172941|gb|EFU16958.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX1346]
          Length = 442

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431


>gi|315151031|gb|EFT95047.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0012]
          Length = 442

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431


>gi|218778639|ref|YP_002429957.1| signal recognition particle-docking protein FtsY [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760023|gb|ACL02489.1| signal recognition particle-docking protein FtsY [Desulfatibacillum
           alkenivorans AK-01]
          Length = 359

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 174/295 (58%), Gaps = 7/295 (2%)

Query: 16  KLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L    A T   L   I D  I+   L +   EELE+ LI +D+GV     ++E +  K 
Sbjct: 63  RLKDKLAKTRDVLNTPIEDFFITKTELTEDSLEELEETLITADMGVNTVMDLMEPVAEKV 122

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD---FSHRPHVILVVGVNGVGKTTVIGKL 131
             K ++  + L   + L   ML  L KP + +    + +P VI+VVGVNGVGKTT IGKL
Sbjct: 123 NKKQITNSKELR--AALTDAML-DLIKPVHENKELPNKKPLVIMVVGVNGVGKTTTIGKL 179

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G KVML A DTFR+AA++QL+IWA+R     V     SD AA+AY+    A+A
Sbjct: 180 AANFKKQGKKVMLVAADTFRAAAVEQLEIWAERAGVQIVRHRDNSDPAAVAYDGVAAAEA 239

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DV+IIDTAGRLH    LM  + K+ R   +  P +PH    V+DA TGQNA+ Q ++
Sbjct: 240 RGMDVVIIDTAGRLHTQVNLMEELKKIRRSCHKSLPGSPHETWLVIDANTGQNAVSQAKL 299

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+I+TK+DGTA+GG ++ I     +P+ ++G+GE   DL  F A++F
Sbjct: 300 FHEAIGVTGMILTKVDGTAKGGIVVSICHDMDVPIRYIGLGEKAEDLREFEAREF 354


>gi|119510388|ref|ZP_01629522.1| Cell division transporter substrate-binding protein FtsY [Nodularia
           spumigena CCY9414]
 gi|119464917|gb|EAW45820.1| Cell division transporter substrate-binding protein FtsY [Nodularia
           spumigena CCY9414]
          Length = 553

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 187/315 (59%), Gaps = 6/315 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + V+ E ++W++KL +G   T   +   +  I+    L+    +E+E  L+++D+GV   
Sbjct: 239 EDVSIEEITWLKKLRQGLGKTRRNILNQLKAIVGQGPLNQAAVDEIETALLQADVGVEAT 298

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVI---LVVGV 119
             I+  L  K  A+    +  +  + +++  ML  PL K  +  F+     +   L+ GV
Sbjct: 299 DYIISALQKKLLAEVTPPEEAIAYLKQILRDMLDAPLQKAESLSFTPEKETLNIWLITGV 358

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGK+S     +G K ++ A DTFR+AA++Q+K+W +R+  + + +    +D 
Sbjct: 359 NGAGKTTTIGKISHLAQKSGYKCLIGAADTFRAAAVEQVKVWGNRSGVEVIANPGKNTDP 418

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQA++ ++L++DTAGRL N   LM  + K+ R++ +  P+A    L VLD
Sbjct: 419 AAVVFDAIAAAQARETELLLVDTAGRLQNKKNLMDELAKIRRIIDKKAPNAKIESLLVLD 478

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G GEG+ DL
Sbjct: 479 ATLGQNGLRQAEVFAQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGMEDL 538

Query: 299 EPFVAKDF-SAVITG 312
            PF + +F  A+++G
Sbjct: 539 RPFSSYEFVEALLSG 553


>gi|229547478|ref|ZP_04436203.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX1322]
 gi|300861537|ref|ZP_07107621.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TUSoD Ef11]
 gi|307273590|ref|ZP_07554818.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0855]
 gi|229307402|gb|EEN73389.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX1322]
 gi|295114416|emb|CBL33053.1| signal recognition particle-docking protein FtsY [Enterococcus sp.
           7L76]
 gi|300848998|gb|EFK76751.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TUSoD Ef11]
 gi|306509603|gb|EFM78645.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0855]
 gi|315026457|gb|EFT38389.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX2137]
 gi|315028380|gb|EFT40312.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX4000]
 gi|315145471|gb|EFT89487.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX2141]
 gi|315146608|gb|EFT90624.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX4244]
          Length = 442

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431


>gi|229548053|ref|ZP_04436778.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis ATCC 29200]
 gi|307292113|ref|ZP_07571979.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0411]
 gi|312905396|ref|ZP_07764510.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0635]
 gi|229306842|gb|EEN72838.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis ATCC 29200]
 gi|306496766|gb|EFM66317.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0411]
 gi|310631125|gb|EFQ14408.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0635]
 gi|315161162|gb|EFU05179.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0645]
 gi|315577150|gb|EFU89341.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0630]
          Length = 442

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431


>gi|307284873|ref|ZP_07565029.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0860]
 gi|306503132|gb|EFM72389.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0860]
 gi|315167202|gb|EFU11219.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX1341]
          Length = 442

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431


>gi|29377551|ref|NP_816705.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis V583]
 gi|227554515|ref|ZP_03984562.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis HH22]
 gi|29345018|gb|AAO82775.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis V583]
 gi|227176354|gb|EEI57326.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis HH22]
 gi|315573243|gb|EFU85434.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0309B]
 gi|315581183|gb|EFU93374.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0309A]
          Length = 442

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431


>gi|291544315|emb|CBL17424.1| signal recognition particle-docking protein FtsY [Ruminococcus sp.
           18P13]
          Length = 319

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/312 (40%), Positives = 191/312 (61%), Gaps = 5/312 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    K+ +G   T   +  G+  +++S  ++D+ + E+LE+ +I SD+GV  + +I E+
Sbjct: 1   MGLFSKIKEGLRKTKESMISGMQRVVNSFTKIDEDLFEQLEETMIMSDMGVETSVEICEK 60

Query: 70  LLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   + V+   +++  + E+I +M+    +    D S  P +ILV+GVNG GKTT I
Sbjct: 61  LRKRVKERGVTDPGKIMELIQEIISEMM---GEDVALDLSTTPSIILVIGVNGAGKTTTI 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL  +    G KV++AA DTFR+AAIDQL++W  R   D V    GSD AA+ ++A   
Sbjct: 118 GKLCHQYKQQGKKVLVAAADTFRAAAIDQLEVWTQRAGVDLVKHAEGSDPAAVVFDAVTA 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+K DVLI DTAGRLHN   LM  + K+ R++ +         L VLDATTGQNA+ Q
Sbjct: 178 AKARKTDVLICDTAGRLHNKKNLMEELRKINRIISQQAEGCAVETLLVLDATTGQNAVNQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F+ VA  TG+++TK+DGTA+GG +I I     IPV  +GVGE I+DL+PF ++ F  
Sbjct: 238 ARLFNEVADITGIVLTKLDGTAKGGIVISIKNELGIPVKLIGVGEQIDDLQPFDSRSFVT 297

Query: 309 VITGCLDYGEEK 320
            +    D GEE+
Sbjct: 298 ALFERTDKGEEQ 309


>gi|312902148|ref|ZP_07761408.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0470]
 gi|311290812|gb|EFQ69368.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0470]
          Length = 442

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431


>gi|315154687|gb|EFT98703.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0043]
          Length = 442

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 351 PDAPHEVLLVVDATTGQNAMMQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431


>gi|229098316|ref|ZP_04229263.1| Cell division protein ftsY [Bacillus cereus Rock3-29]
 gi|229104409|ref|ZP_04235078.1| Cell division protein ftsY [Bacillus cereus Rock3-28]
 gi|229117333|ref|ZP_04246711.1| Cell division protein ftsY [Bacillus cereus Rock1-3]
 gi|228666233|gb|EEL21697.1| Cell division protein ftsY [Bacillus cereus Rock1-3]
 gi|228679107|gb|EEL33315.1| Cell division protein ftsY [Bacillus cereus Rock3-28]
 gi|228685214|gb|EEL39145.1| Cell division protein ftsY [Bacillus cereus Rock3-29]
          Length = 332

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/306 (39%), Positives = 192/306 (62%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K   G   T     + + D++   R++D+   EELE++LI +D+GV+ 
Sbjct: 12  EKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVST 71

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   +   +V  +I + L+ + K  + DFS+  +       V+L
Sbjct: 72  VMELIDQLKEEVQRRNIQDPK---EVQAVISEKLVGIYKG-DSDFSNEINMQEDQLTVVL 127

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ +    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 128 FVGVNGVGKTTTIGKLAHRFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 187

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 188 SDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 247

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 248 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 307

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 308 DDLQQF 313


>gi|312278746|gb|ADQ63403.1| Signal recognition particle-docking protein FtsY [Streptococcus
           thermophilus ND03]
          Length = 463

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/316 (39%), Positives = 185/316 (58%), Gaps = 12/316 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K  +E   + R L K     + +L E   +    RR+D+   E+LE++LI SD+GV VA 
Sbjct: 154 KTETEQEKYNRTLKKTRTGFAARLNEFFANF---RRVDEEFFEQLEEILILSDVGVNVAT 210

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGV 119
           ++ E+L   RY   +   +   D+  LI + L+ + +  +      +F     VIL VGV
Sbjct: 211 QLTEDL---RYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYEEQINFQDGLTVILFVGV 267

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ K    G  VML A DTFR+ A+ QL  W  R     V     +D A
Sbjct: 268 NGVGKTTSIGKLANKYKQEGKNVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGAEKADPA 327

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA
Sbjct: 328 SVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLALDA 387

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TGL++TK+DG+A+GG ++ I     IPV  +G GE I+D+ 
Sbjct: 388 STGQNALNQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKIDDIG 447

Query: 300 PFVAKDF-SAVITGCL 314
            F +++F  +++TG +
Sbjct: 448 EFHSEEFMQSLLTGLV 463


>gi|16078658|ref|NP_389477.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309470|ref|ZP_03591317.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313795|ref|ZP_03595600.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318719|ref|ZP_03600013.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221322990|ref|ZP_03604284.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|321315361|ref|YP_004207648.1| signal recognition particle-docking protein FtsY [Bacillus subtilis
           BSn5]
 gi|33517363|sp|P51835|FTSY_BACSU RecName: Full=Cell division protein ftsY homolog
 gi|2633967|emb|CAB13468.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291484146|dbj|BAI85221.1| signal recognition particle, docking protein [Bacillus subtilis
           subsp. natto BEST195]
 gi|320021635|gb|ADV96621.1| signal recognition particle-docking protein FtsY [Bacillus subtilis
           BSn5]
          Length = 329

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/305 (41%), Positives = 185/305 (60%), Gaps = 10/305 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+  ++ S   K   G   T    +  + D++S  R++D+   EELE++LI +D+G   
Sbjct: 9   EKITKQTDSVSEKFKDGLEKTRNSFQNKVNDLVSRYRKVDEDFFEELEEVLISADVGFTT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILV 116
             ++++EL  K+  K  ++Q    +V  +I + L+ +    +   S       R +VIL+
Sbjct: 69  VMELIDEL--KKEVKRRNIQDP-KEVQSVISEKLVEIYNSGDEQISELNIQDGRLNVILL 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ KM   G  V+LAAGDTFR+ AI+QL++W +RT    +    GS
Sbjct: 126 VGVNGVGKTTTIGKLAHKMKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQTAGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A   A+A+  DVLI DTAGRL N   LM  + K+ RV++R  P APH VL  
Sbjct: 186 DPAAVIYDAVHAAKARNADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLA 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I     IPV  +G+GE ++
Sbjct: 246 LDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVD 305

Query: 297 DLEPF 301
           DL+ F
Sbjct: 306 DLQEF 310


>gi|255974286|ref|ZP_05424872.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T2]
 gi|256761077|ref|ZP_05501657.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T3]
 gi|255967158|gb|EET97780.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T2]
 gi|256682328|gb|EEU22023.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T3]
          Length = 353

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 84  LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 141

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 142 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 201

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 202 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 261

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 262 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 321

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 322 KLVGLGEGINDLEPFNANDFA 342


>gi|152976213|ref|YP_001375730.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152024965|gb|ABS22735.1| signal recognition particle-docking protein FtsY [Bacillus
           cytotoxicus NVH 391-98]
          Length = 329

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 123/308 (39%), Positives = 190/308 (61%), Gaps = 6/308 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV  
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILISADVGVTT 68

Query: 63  AQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             +++++L   + +R  +D   VQ V+ +    I+K     S   N     +  VIL VG
Sbjct: 69  VMELIDQLKDEVKRRNIQDPKEVQAVISEKLIDIYKGEEGFSNEINMQ-QDQLTVILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W +R   + +    GSD 
Sbjct: 128 VNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGNRVGVEVIKQGSGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+D
Sbjct: 188 AAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVLLVID 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL
Sbjct: 248 ATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307

Query: 299 EPFVAKDF 306
           + F  + +
Sbjct: 308 QQFQPEQY 315


>gi|262196884|ref|YP_003268093.1| signal recognition particle-docking protein FtsY [Haliangium
           ochraceum DSM 14365]
 gi|262080231|gb|ACY16200.1| signal recognition particle-docking protein FtsY [Haliangium
           ochraceum DSM 14365]
          Length = 377

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 180/306 (58%), Gaps = 6/306 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L  G A T       +  + + +++D  V +ELE +L  +DIG   A  + + +  +  
Sbjct: 73  RLRDGLARTRGGFVARLGKLFARKQIDADVLDELEQVLFTADIGPKTADTLFQSIKARLS 132

Query: 76  AKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            +++     ++  SE+  + L  L   + P  +   H+P V+L +GVNGVGKTT IGKL+
Sbjct: 133 KQELDDPEAVW--SEIRERSLAILDVDTPPLTFS-EHKPFVLLTIGVNGVGKTTTIGKLA 189

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            K+   G +V+L AGDTFR+AA++QL+IW +R  A  V  + G D +++ ++  K+   +
Sbjct: 190 AKLGAEGKRVLLGAGDTFRAAAVEQLQIWGERADAPVVTGKSGGDPSSVLFDTIKRGVDE 249

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K DV+I DTAGRLH    LM  + K+ RV ++  P APH    VLDATTGQNA++Q +MF
Sbjct: 250 KFDVVICDTAGRLHTKVDLMDELKKVGRVCEKAMPGAPHETWLVLDATTGQNAIQQAQMF 309

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                 TG+++TK+DGTA+GG ++ I     +PV ++G+GE ++DL  F A+ F   +  
Sbjct: 310 KQAMNITGIVLTKLDGTAKGGVILGICHELAVPVRYIGIGESVSDLREFDARAFVDALYA 369

Query: 313 CLDYGE 318
             D  E
Sbjct: 370 NTDAAE 375


>gi|188996328|ref|YP_001930579.1| signal recognition particle-docking protein FtsY
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931395|gb|ACD66025.1| signal recognition particle-docking protein FtsY
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 304

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/296 (38%), Positives = 186/296 (62%), Gaps = 2/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  K+ KG   T  +L EG + I   R++D+ + E++E +L+++D+GV   Q+I++ L 
Sbjct: 4   SFFEKVKKGLEKTKKQLAEGFSKISFGRKIDESLFEDIEAVLLKADVGVKATQEIIQFLR 63

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + ++  + L ++  E I+ +L        +    +P V+L +G+NG GKTT +GK
Sbjct: 64  EESKKRKITEGQQLKELLKEKIYDILKDCEGRLTF-LGEKPDVLLFLGINGSGKTTTVGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G  V+LAA DTFR+AAIDQL++WA+R     V  + G+D +A+ ++A   A+
Sbjct: 123 LAYMLKQDGKSVVLAAADTFRAAAIDQLEVWANRVGVRIVKHQPGADPSAVVFDAINSAK 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRLH    LM  + K+ + + +   + P   L VLD T GQN++ Q +
Sbjct: 183 AKGDDIVIVDTAGRLHTKEHLMKELQKIKKTIAKFSENQPVETLLVLDGTIGQNSINQAK 242

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F      +G+I+TK+DGT++GG +IPI    KIP+ F+GVGEGI+DL+PF AK+F
Sbjct: 243 TFKEATDVSGIIITKLDGTSKGGAIIPICKDLKIPIKFIGVGEGIDDLQPFDAKEF 298


>gi|138894715|ref|YP_001125168.1| Signal recognition particle-docking protein FtsY [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247666|ref|ZP_03146368.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           G11MC16]
 gi|134266228|gb|ABO66423.1| Signal recognition particle-docking protein FtsY [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212450|gb|EDY07207.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           G11MC16]
          Length = 329

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/300 (42%), Positives = 188/300 (62%), Gaps = 12/300 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K  +G + T   L   + D+I+  R++D+   EELE++LI +D+GV    ++V+EL  + 
Sbjct: 21  KFREGLSKTRDSLAGKVNDLIARYRKVDEEFFEELEEILIAADVGVTTVMELVDELKMEV 80

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF--------SHRPHVILVVGVNGVGKTT 126
             +++     + DV   I + L+ + +    D         ++   VIL VGVNGVGKTT
Sbjct: 81  KRRNIQDSAQMRDV---IAEKLIDIYRAGADDSELSALNIQTNGLTVILFVGVNGVGKTT 137

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ K+   G  V+LAAGDTFR+ AI+QL++W +R   D +    GSD AA+ Y+A 
Sbjct: 138 TIGKLAHKLKSEGKSVLLAAGDTFRAGAIEQLEVWGERVGVDVIKQTAGSDPAAVMYDAI 197

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ VDVL+ DTAGRL N   LM  + K+ RV+ R  P APH VL VLDATTGQNA+
Sbjct: 198 QAAKARGVDVLLCDTAGRLQNKVNLMKELEKVKRVISREIPGAPHEVLLVLDATTGQNAM 257

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL+PF A+ +
Sbjct: 258 SQAKLFKEATDVTGIVLTKLDGTAKGGIVLAIRNELAIPVKFVGLGEKMDDLQPFDAEKY 317


>gi|299144130|ref|ZP_07037210.1| signal recognition particle-docking protein FtsY [Peptoniphilus sp.
           oral taxon 386 str. F0131]
 gi|298518615|gb|EFI42354.1| signal recognition particle-docking protein FtsY [Peptoniphilus sp.
           oral taxon 386 str. F0131]
          Length = 410

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 129/307 (42%), Positives = 186/307 (60%), Gaps = 22/307 (7%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           LS  +KL +G   T  ++   I  I+ S  ++DD + E+LED+LI +DIG+    K+++ 
Sbjct: 109 LSIFQKLKQGLTKTRHEMGVKINTILGSYVKIDDEMLEDLEDILISADIGMETTMKLIDN 168

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFSHR-----PHVILVVGV 119
           L      ++  +Q  + D +     M+ PL      K  N     +     P +ILVVGV
Sbjct: 169 L------RNTIIQEKINDPN-----MVKPLLKEEVKKLMNDSLDSKIKKESPTIILVVGV 217

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKLS K+   G KV++AA DTFR+AAIDQLK W DR + D +    G+D A
Sbjct: 218 NGVGKTTTIGKLSSKLKMEGNKVLIAAADTFRAAAIDQLKTWGDRANVDVISHNEGADPA 277

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++    A+++  D+LI DTAGRLHN + LM  + K+ RV+ R  P+A    L VLDA
Sbjct: 278 AVIFDGITAAKSRNSDILICDTAGRLHNKANLMKELEKINRVIDREYPNANRETLLVLDA 337

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F  V   +G+++TK+DGTA+GG +I +    +IP+  +GVGEGI+DL+
Sbjct: 338 TTGQNAMNQAKTFKEVCSISGIVLTKLDGTAKGGVVIALQSELQIPIKLVGVGEGIDDLQ 397

Query: 300 PFVAKDF 306
            F    F
Sbjct: 398 EFELNSF 404


>gi|256618148|ref|ZP_05474994.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis ATCC 4200]
 gi|256597675|gb|EEU16851.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis ATCC 4200]
          Length = 331

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 62  LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 119

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 120 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 179

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 180 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 239

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 240 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 299

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 300 KLVGLGEGINDLEPFNANDFA 320


>gi|288926975|ref|ZP_06420871.1| signal recognition particle-docking protein FtsY [Prevotella buccae
           D17]
 gi|315608918|ref|ZP_07883890.1| cell division protein FtsY [Prevotella buccae ATCC 33574]
 gi|288336258|gb|EFC74643.1| signal recognition particle-docking protein FtsY [Prevotella buccae
           D17]
 gi|315249298|gb|EFU29315.1| cell division protein FtsY [Prevotella buccae ATCC 33574]
          Length = 318

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 114/257 (44%), Positives = 164/257 (63%), Gaps = 7/257 (2%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKP--FNWDF--SH 109
           SD+GV    K++  +  +R A+D  VS   +   + + I  +L   +     NWD    H
Sbjct: 55  SDVGVDTTLKVISRI-EERVARDKYVSTGELNGILRDEIAALLSENNSDDNGNWDLPADH 113

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+VILVVGVNGVGKTT IGKL+ +   AG KV L A DTFR+AA++Q+ IW +R     
Sbjct: 114 RPYVILVVGVNGVGKTTTIGKLAYQFKKAGKKVFLGAADTFRAAAVEQISIWGERVGVTV 173

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V  ++G+D A++A++  + A+A   DV++IDTAGRLHN   LM  + K+  V+K++ P A
Sbjct: 174 VKQQMGADPASVAFDTLQSAKANGADVVLIDTAGRLHNKVGLMNELKKIKEVMKKVLPEA 233

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  V+ VLD +TGQNA  Q + F AV   T L +TK+DGTA+GG +I I    K+PV ++
Sbjct: 234 PDEVMLVLDGSTGQNAFEQAKQFSAVTNITSLAITKLDGTAKGGVVIGISDQLKVPVKYI 293

Query: 290 GVGEGINDLEPFVAKDF 306
           G+GEG+ DL+ F  ++F
Sbjct: 294 GLGEGMEDLQLFDKREF 310


>gi|289435146|ref|YP_003465018.1| cell division ABC transporter, substrate-binding protein [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289171390|emb|CBH27934.1| cell division ABC transporter, substrate-binding protein [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|313637356|gb|EFS02837.1| signal recognition particle-docking protein FtsY [Listeria
           seeligeri FSL S4-171]
          Length = 328

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 191/310 (61%), Gaps = 12/310 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G    
Sbjct: 10  KITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 69

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116
            ++VE L  +   +++S  +   DV E+I + L+ + +  + +     H       VIL 
Sbjct: 70  MELVEALRREVQLRNISDPK---DVQEVIVEKLVDIYQG-DQEEEETLHIEKDGLTVILF 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AI+QL++W +RT  D +    GS
Sbjct: 126 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIEQLEVWGERTGVDVIKQAEGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL V
Sbjct: 186 DPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE ++
Sbjct: 246 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELHIPVKFVGLGEQMD 305

Query: 297 DLEPFVAKDF 306
           DL+ F A ++
Sbjct: 306 DLQAFDANEY 315


>gi|256854769|ref|ZP_05560133.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T8]
 gi|256962932|ref|ZP_05567103.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis HIP11704]
 gi|257080503|ref|ZP_05574864.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis E1Sol]
 gi|257083239|ref|ZP_05577600.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis Fly1]
 gi|257088209|ref|ZP_05582570.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis D6]
 gi|257091334|ref|ZP_05585695.1| cell division transporter substrate-binding protein ftsY
           [Enterococcus faecalis CH188]
 gi|257417940|ref|ZP_05594934.1| cell division transporter substrate-binding protein ftsY
           [Enterococcus faecalis T11]
 gi|256710329|gb|EEU25373.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T8]
 gi|256953428|gb|EEU70060.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis HIP11704]
 gi|256988533|gb|EEU75835.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis E1Sol]
 gi|256991269|gb|EEU78571.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis Fly1]
 gi|256996239|gb|EEU83541.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis D6]
 gi|257000146|gb|EEU86666.1| cell division transporter substrate-binding protein ftsY
           [Enterococcus faecalis CH188]
 gi|257159768|gb|EEU89728.1| cell division transporter substrate-binding protein ftsY
           [Enterococcus faecalis T11]
          Length = 331

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 62  LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 119

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 120 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 179

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 180 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 239

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 240 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 299

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 300 KLVGLGEGINDLEPFNANDFA 320


>gi|284040192|ref|YP_003390122.1| signal recognition particle-docking protein FtsY [Spirosoma
           linguale DSM 74]
 gi|283819485|gb|ADB41323.1| signal recognition particle-docking protein FtsY [Spirosoma
           linguale DSM 74]
          Length = 318

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 116/278 (41%), Positives = 169/278 (60%), Gaps = 6/278 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD--V 88
           ++    +D+ V +E+E++LI SD+GV    KI+    E +   +Y     + R+L +   
Sbjct: 34  VVGKSTVDEDVLDEVENVLISSDVGVETTVKIIRRIEERVARDKYVGTDELDRILREEIA 93

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + L     + ++  F      +P+VI+VVGVNGVGKTT IGKL+ +    G KV+L AGD
Sbjct: 94  ALLSDNNTVDVADDFALPAGIKPYVIMVVGVNGVGKTTTIGKLAAQFHKRGKKVVLGAGD 153

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+AA+DQLK+W +R     +   + +D +A+A++A K+A     DV+IIDTAGRLH  
Sbjct: 154 TFRAAAVDQLKLWGERVGVPVISHGMNTDPSAVAFDAVKKATEIGADVVIIDTAGRLHTK 213

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  + K+ RV+++    APH VL VLD +TGQNA  Q   F      T L +TK+DG
Sbjct: 214 INLMNELTKIKRVMQKFTSEAPHEVLLVLDGSTGQNAFIQATEFTKATEVTALAITKLDG 273

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TA+GG +I I    KIPV ++GVGE I+DL+ F   +F
Sbjct: 274 TAKGGVVIGISDQFKIPVKYIGVGEKIDDLQTFNKMEF 311


>gi|194333177|ref|YP_002015037.1| signal recognition particle-docking protein FtsY [Prosthecochloris
           aestuarii DSM 271]
 gi|194310995|gb|ACF45390.1| signal recognition particle-docking protein FtsY [Prosthecochloris
           aestuarii DSM 271]
          Length = 315

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/308 (41%), Positives = 190/308 (61%), Gaps = 12/308 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV----AVAQKIVE 68
           + +L  G   T   +++ I+ +   R  +D+   EELE++LI +D+GV    ++  +I E
Sbjct: 9   LSRLKDGLTKTRETIRDNISRLTQGRTEIDEEFLEELENILIAADVGVETTLSIVDRITE 68

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFS--HRPHVILVVGVNGVGK 124
               + Y  +  +  +L  V   + +ML+  S+  P ++D S   +P+VIL+VGVNGVGK
Sbjct: 69  RAKEETYRSEDELNNMLLQV---MQEMLLDASEDHPVDFDASLPAKPYVILIVGVNGVGK 125

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT I KL+     +G KVM+AA DTFR+AA++QL+IWADR     V    G+D A++ ++
Sbjct: 126 TTSIAKLAHNYHKSGKKVMIAAADTFRAAAVEQLQIWADRAGVPMVSQGQGADPASVVFD 185

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A A++ DV+++DTAGRLHN + LM  + K++RV K+  P APH VL VLD TTGQN
Sbjct: 186 AVSSAVAREADVVLVDTAGRLHNKAYLMEELAKIMRVAKKKVPEAPHEVLLVLDGTTGQN 245

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q   F      TGLI+TK+DGTA+GG ++ I     +PV ++GVGE I+DL+ F   
Sbjct: 246 AVSQAREFTKCVNVTGLIITKLDGTAKGGIVLSISRDLHLPVKYIGVGEKIDDLQIFDRS 305

Query: 305 DFSAVITG 312
            F   + G
Sbjct: 306 KFVGALMG 313


>gi|146329515|ref|YP_001209772.1| signal recognition particle FtsY [Dichelobacter nodosus VCS1703A]
 gi|50262050|gb|AAT72765.1| putative signal recognition receptor [Dichelobacter nodosus]
 gi|146232985|gb|ABQ13963.1| signal recognition particle FtsY [Dichelobacter nodosus VCS1703A]
          Length = 450

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 116/258 (44%), Positives = 169/258 (65%), Gaps = 8/258 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L+ +D G+ + +KI+  +  K   K+++    VQ+ + D    + ++L P  +P   +  
Sbjct: 189 LLTADCGIEITEKIIAHIKDKMNRKELADSDAVQKAVAD---YMIELLTPYEQPLCVE-K 244

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           H+P VIL+ G+NG GKTT IGKLS ++   G K+MLAA DTFR+AA++QL+ W +R    
Sbjct: 245 HQPFVILMAGINGAGKTTTIGKLSHRLQQEGKKIMLAAADTFRAAAVEQLQTWGERHHIP 304

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +  + G+DAA++AY+A + AQA+K+DVLIIDTAGRLH    LM  + K+ RVL++LD  
Sbjct: 305 VIAQKTGADAASVAYDALQSAQARKMDVLIIDTAGRLHTQDHLMDELKKVKRVLQKLDDK 364

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            PH  L V+DA  GQNAL+Q   FH   G  GL++TK+DG+A+GG L  I    K+P+ F
Sbjct: 365 VPHETLLVIDAGNGQNALKQALSFHQDIGVDGLVITKLDGSAKGGILFAITEKLKVPIRF 424

Query: 289 LGVGEGINDLEPFVAKDF 306
           +GVGE  +DL  F AK+F
Sbjct: 425 VGVGERSDDLHAFNAKNF 442


>gi|310778343|ref|YP_003966676.1| signal recognition particle-docking protein FtsY [Ilyobacter
           polytropus DSM 2926]
 gi|309747666|gb|ADO82328.1| signal recognition particle-docking protein FtsY [Ilyobacter
           polytropus DSM 2926]
          Length = 413

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 112/269 (41%), Positives = 173/269 (64%), Gaps = 6/269 (2%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL 99
           +DD + E+LE++LI+SDIG+ +  KIV  L  +  ++ +   + +Y V  +++   L+  
Sbjct: 142 IDDEMYEDLEEMLIQSDIGMDMTLKIVGALEKEVRSRGIKDPKEVYGVLKDVMENFLIEE 201

Query: 100 SKPFNWDFSHRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                   + +P  +VILVVGVNGVGKTT IGK++ K++  G KV++ AGDTFR+AAI+Q
Sbjct: 202 ENELK---TEKPGLNVILVVGVNGVGKTTTIGKIASKLTKEGKKVIVGAGDTFRAAAIEQ 258

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+ W  R  A+ +  + G+D  A+ ++  K A+ +  DV IIDTAGRLHN + LM  + K
Sbjct: 259 LEEWTIRAGAEIIKHQQGTDPGAVVFDTLKAAENRNADVAIIDTAGRLHNKNNLMKELEK 318

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + R++++    + +  + V+D TTGQN L Q ++F+ V   TG I+TK+DGTA+GG +  
Sbjct: 319 INRIIEKHVGDSSYESILVIDGTTGQNGLNQAKVFNEVTKLTGFIVTKLDGTAKGGIVFA 378

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           I    K P+ F+GVGEGI DL PF  K++
Sbjct: 379 ISEELKKPIKFIGVGEGIEDLRPFKPKEY 407


>gi|257420452|ref|ZP_05597442.1| signal recognition particle-docking protein ftsY [Enterococcus
           faecalis X98]
 gi|257162276|gb|EEU92236.1| signal recognition particle-docking protein ftsY [Enterococcus
           faecalis X98]
          Length = 331

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 62  LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 119

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 120 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 179

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 180 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 239

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 240 PDAPHEVLLVVDATTGQNAMMQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 299

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 300 KLVGLGEGINDLEPFNANDFA 320


>gi|257417223|ref|ZP_05594217.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis AR01/DG]
 gi|257159051|gb|EEU89011.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis ARO1/DG]
          Length = 331

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 62  LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINI 119

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 120 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 179

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 180 VEVVRGNAGGDPAAVVFDAVERAKAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 239

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 240 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 299

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 300 KLVGLGEGINDLEPFNANDFA 320


>gi|313892734|ref|ZP_07826315.1| signal recognition particle-docking protein FtsY [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442665|gb|EFR61076.1| signal recognition particle-docking protein FtsY [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 311

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/302 (39%), Positives = 179/302 (59%), Gaps = 9/302 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           +  +  ++ +G   T     + +  I I   ++DD   ++LE +++ SD+G    + ++ 
Sbjct: 2   AFGFFDRIKEGLEKTRKSFVKNVESIVIGYAQIDDDFLDDLEAVMLTSDLGPKTTEYLMR 61

Query: 69  ELLTKRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           E+  +R   +  +     V+  + + I +ML+           H P VILVVGVNGVGKT
Sbjct: 62  EI--RRGVTEGIINNTGDVMPFMEDRITEMLVDQEDEITL---HHPEVILVVGVNGVGKT 116

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T I KL+   +  G KV++AAGDTFR+AA DQL IWADR     V  + G+D AA+ Y+A
Sbjct: 117 TTIAKLANYYTKEGKKVIIAAGDTFRAAAADQLSIWADRVGVPIVKHKEGADPAAVVYDA 176

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+  D++I+DTAGRLH    LM  + KM RV       APH  L VLD TTGQNA
Sbjct: 177 MEAAKARNADLVIVDTAGRLHTKVNLMEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNA 236

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q ++F       G+++TK+DGTA+GG +I I     +PV ++GVGEG++DL PF AK+
Sbjct: 237 VSQAKLFGQAVPVNGIVVTKLDGTAKGGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKE 296

Query: 306 FS 307
           F+
Sbjct: 297 FA 298


>gi|228947566|ref|ZP_04109856.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123361|ref|ZP_04252565.1| Cell division protein ftsY [Bacillus cereus 95/8201]
 gi|228660137|gb|EEL15773.1| Cell division protein ftsY [Bacillus cereus 95/8201]
 gi|228812086|gb|EEM58417.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 329

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 119/306 (38%), Positives = 192/306 (62%), Gaps = 12/306 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62
           +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV+ 
Sbjct: 9   EKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVST 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VIL 115
             +++++L  +   +++   R   +V  +I + L+ + K  + +F++  +       V+L
Sbjct: 69  VMELIDQLKEEVQRRNIQDPR---EVQAVISEKLIEIYKG-DSNFTNEVNMQKDGLTVVL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    G
Sbjct: 125 FVGVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVMYDAVQAAKARNVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE +
Sbjct: 245 VIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQM 304

Query: 296 NDLEPF 301
           +DL+ F
Sbjct: 305 DDLQQF 310


>gi|295399782|ref|ZP_06809763.1| signal recognition particle-docking protein FtsY [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978185|gb|EFG53782.1| signal recognition particle-docking protein FtsY [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 330

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 129/305 (42%), Positives = 189/305 (61%), Gaps = 10/305 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+  ++ S   K  +G A T       + D+I+  R++D+   EELE++LI +D+GV  
Sbjct: 9   EKITKQTDSVTEKFKQGLAKTRDSFAGRVNDLIARYRKVDEEFFEELEEILIGADVGVTT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFSHRP-HVILV 116
             ++V+EL  K   K  ++Q    ++  +I + L+ +      KP   +       VIL 
Sbjct: 69  VMELVDEL--KMEVKRRNIQNP-QEMQAVISEKLVEIYRGGDDKPAELNIQEDGLTVILF 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ K+   G  VMLAAGDTFR+ AI+QL++W +R  A+ +    GS
Sbjct: 126 VGVNGVGKTTTIGKLAHKLKSEGKTVMLAAGDTFRAGAIEQLEVWGERVGAEVIKQTAGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A + A+A+  DVL+ DTAGRL N   LM  + K+ RV++R    APH VL V
Sbjct: 186 DPAAVIYDAIQAAKARGADVLLCDTAGRLQNKVNLMKELEKVKRVIEREILGAPHEVLLV 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++
Sbjct: 246 LDATTGQNAMSQAKTFKEATNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGEKVD 305

Query: 297 DLEPF 301
           DL+PF
Sbjct: 306 DLQPF 310


>gi|15615049|ref|NP_243352.1| signal recognition particle (docking protein) [Bacillus halodurans
           C-125]
 gi|10175106|dbj|BAB06205.1| signal recognition particle (docking protein) [Bacillus halodurans
           C-125]
          Length = 330

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/310 (40%), Positives = 188/310 (60%), Gaps = 9/310 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+++++     K   G   T       + D++   R +D+   EELE++LI +D+GV 
Sbjct: 8   KEKISTQTTEVTEKFKAGLEKTRDSFAGKMNDLVYKYRSVDEDFFEELEEILIGADVGVT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRP---HVILV 116
               +VEEL  +   +++   +   D+  +I + L  L   +    + + +P    VILV
Sbjct: 68  TVMDLVEELKDEVRRQNIKDSK---DIQPIISEKLAELLEKEGGETEVNLQPAGLSVILV 124

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+      G KV+LAAGDTFR+ AI+QL++W +R   D +    GS
Sbjct: 125 VGVNGVGKTTSIGKLAHMYKQQGKKVILAAGDTFRAGAIEQLEVWGERAGVDVIKQSEGS 184

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A + A++++ D+LI DTAGRL N   LM  + K+ RV+ R  P APH VL  
Sbjct: 185 DPAAVMFDAIQAAKSREADILICDTAGRLQNKVNLMKELEKVKRVISREIPGAPHEVLIA 244

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q + F      TG+I+TK+DGTA+GG ++ I     IPV F+G+GE I+
Sbjct: 245 LDATTGQNAMSQAKTFKETTDVTGIILTKLDGTAKGGIVLAIRHELDIPVKFVGLGEKID 304

Query: 297 DLEPFVAKDF 306
           DL+PF ++ F
Sbjct: 305 DLQPFDSEQF 314


>gi|328950293|ref|YP_004367628.1| signal recognition particle-docking protein FtsY [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450617|gb|AEB11518.1| signal recognition particle-docking protein FtsY [Marinithermus
           hydrothermalis DSM 14884]
          Length = 304

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 178/310 (57%), Gaps = 14/310 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +SW ++L +G   TS    + I   +      + V EELE  LI +D+GV   Q+I+EE+
Sbjct: 1   MSWFQRLKEGLKKTS----QAIAQAVPWGGDPEEVLEELEFALIAADVGVEATQEILEEV 56

Query: 71  LT--KRYAKDVSVQRVLYDV------SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
               K+  ++   Q ++  +      ++L      P +K    +   R  V+L+VGVNGV
Sbjct: 57  RQSGKKDLREAVKQSLVLQLEPDARRAKLRKLGFTPNAKKAVVEPKGR--VVLMVGVNGV 114

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I KL +     G  VM  AGDTFR+A   QL +W +R     +    GSD  ALA
Sbjct: 115 GKTTTIAKLGRYYRQHGRSVMFCAGDTFRAAGGAQLGLWGERLGIPVIQGPEGSDPGALA 174

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A +  +A+ +D+L +DTAGRLH    LM  + K+ R + + DP  P  V  VLDA TG
Sbjct: 175 FDAAQARKARGIDLLFVDTAGRLHTKHNLMEELKKIKRAIDKADPGEPGEVWLVLDAVTG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN L+Q + FH   G TG+I+TK+DGTA+GG L+PIV    +P+ F+GVGEG +DL+PF 
Sbjct: 235 QNGLQQAKRFHEAVGLTGVIVTKLDGTAKGGVLVPIVRELGVPIRFIGVGEGPDDLQPFD 294

Query: 303 AKDFSAVITG 312
           A +F   + G
Sbjct: 295 AGEFVEALLG 304


>gi|238019505|ref|ZP_04599931.1| hypothetical protein VEIDISOL_01374 [Veillonella dispar ATCC 17748]
 gi|237864204|gb|EEP65494.1| hypothetical protein VEIDISOL_01374 [Veillonella dispar ATCC 17748]
          Length = 311

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 117/276 (42%), Positives = 171/276 (61%), Gaps = 8/276 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR---VLYDVSEL 91
           +I   ++DD   ++LE +++ SD+G    + +++E+  +R   +  +     V+  + + 
Sbjct: 28  VIGYAQIDDDFLDDLEAVMLTSDLGPKTTEYLMKEI--RRGVTEGVINNTGDVMPFMEDR 85

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           I +ML+           H P VILVVGVNGVGKTT I KL+   +  G KV++AAGDTFR
Sbjct: 86  ITEMLVDQEDEITL---HHPEVILVVGVNGVGKTTTIAKLANYYTKEGKKVIIAAGDTFR 142

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           +AA DQL IWADR     V  + G+D AA+ Y+A + A+A+  D++I+DTAGRLH    L
Sbjct: 143 AAAADQLSIWADRVGVPIVKHKEGADPAAVVYDAMEAAKARNADLVIVDTAGRLHTKVNL 202

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + KM RV       APH  L VLD TTGQNA+ Q ++F       G+++TK+DGTA+
Sbjct: 203 MEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNAVSQAKLFGQAVPVNGIVVTKLDGTAK 262

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           GG +I I     +PV ++GVGEG++DL PF AK+F+
Sbjct: 263 GGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKEFA 298


>gi|329910207|ref|ZP_08275253.1| Signal recognition particle receptor protein FtsY (alpha subunit)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546237|gb|EGF31273.1| Signal recognition particle receptor protein FtsY (alpha subunit)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 220

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 110/218 (50%), Positives = 143/218 (65%), Gaps = 2/218 (0%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           ML PL KP      H+P V+++ GVNG GKTT IGKL+K +      V+LAAGDTFR+AA
Sbjct: 1   MLSPLQKPLELG-RHQPLVMMITGVNGAGKTTTIGKLAKHLQANRQSVLLAAGDTFRAAA 59

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +QL IW +R +   +  E G D AA+A++A   A AKK +V++IDTAGRL     LM  
Sbjct: 60  REQLTIWGERNNVAVIAQESG-DPAAVAFDAVHSAMAKKTNVVMIDTAGRLPTQLHLMEE 118

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+ RV+ +  P APH +L V+D  TGQNAL QV+ F    G TGL++TK+DGTA+GG 
Sbjct: 119 LKKIKRVIAKAMPSAPHEILLVIDGNTGQNALMQVKAFDDALGLTGLVVTKLDGTAKGGV 178

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           L  I  T  IPVYF+GVGE I DL+PF A +F   + G
Sbjct: 179 LAAIARTRPIPVYFIGVGEQIEDLQPFNADEFVTALLG 216


>gi|269119246|ref|YP_003307423.1| signal recognition particle-docking protein FtsY [Sebaldella
           termitidis ATCC 33386]
 gi|268613124|gb|ACZ07492.1| signal recognition particle-docking protein FtsY [Sebaldella
           termitidis ATCC 33386]
          Length = 347

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 119/295 (40%), Positives = 177/295 (60%), Gaps = 7/295 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           K  KGF +   KLKE    + + + +DD + EELEDLLI+SD+G  +  +++EEL  +  
Sbjct: 58  KTKKGFFT---KLKE----VFTGKPIDDEMYEELEDLLIQSDLGFDMTLRVIEELEERVK 110

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              V     +Y++ + I +  +            + ++ILVVGVNGVGKTT IGK++ K+
Sbjct: 111 KAKVKDSEEVYEILKQILREKISSENSALDIVDGKLNIILVVGVNGVGKTTSIGKIASKL 170

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                KV++ A DTFR+AAI+QL+ W  RT  + +    GSD  A+ ++    A++KK D
Sbjct: 171 KQKNKKVIIGAADTFRAAAIEQLEEWGKRTGVEVIKQSHGSDPGAVVFDTISTARSKKYD 230

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V IIDTAGRLHN S LM  + K+ +++ +         L V+D+TTGQN L+Q ++F+ +
Sbjct: 231 VAIIDTAGRLHNKSDLMKELEKINKIIIQQSGEDNFEKLLVIDSTTGQNGLQQAKLFNEI 290

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
              +G+I+TK DGTA+GG +  I    K P+ +LGVGEGI DL  F A +F   I
Sbjct: 291 VDLSGVILTKFDGTAKGGIIFAISDELKKPIKYLGVGEGIEDLREFNADEFVNAI 345


>gi|189499337|ref|YP_001958807.1| signal recognition particle-docking protein FtsY [Chlorobium
           phaeobacteroides BS1]
 gi|189494778|gb|ACE03326.1| signal recognition particle-docking protein FtsY [Chlorobium
           phaeobacteroides BS1]
          Length = 314

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/308 (43%), Positives = 187/308 (60%), Gaps = 12/308 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I +L  G   T   ++E I+ I   R  +D+   EELE++LI +D+GV     IVE +  
Sbjct: 9   ISRLKDGLTKTRESIRENISRITQGRTDIDESFLEELENILIAADVGVETTLNIVERITE 68

Query: 73  K----RYAKDVSVQRVLYDVSELIHKMLM--PLSKP--FNWDFSHRPHVILVVGVNGVGK 124
           K     Y  +  +  +L  V E   +ML+  P S P  F+ D   +P+VILVVGVNGVGK
Sbjct: 69  KAEKETYHSEDELNSMLMKVME---EMLLDTPDSHPVDFDADLPEKPYVILVVGVNGVGK 125

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT I KL+   + AG KV++AA DTFR+AA+ QL+IWADR     V     +D A++ ++
Sbjct: 126 TTSIAKLAHNYNRAGKKVIIAAADTFRAAAVQQLQIWADRAGVPMVSQGQNADPASVVFD 185

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A AK  DV+++DTAGRLHN S LM  + K++RV K+    APH VL VLD TTGQN
Sbjct: 186 AVSSAVAKGADVVLVDTAGRLHNKSHLMEELAKIMRVAKKKVAAAPHEVLLVLDGTTGQN 245

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q + F      +GLI+TK+DG+A+GG ++ I    ++PV ++GVGE I+DL+ F   
Sbjct: 246 AVSQAKEFAKCVQVSGLIVTKLDGSAKGGIVLSISREMELPVKYIGVGEKIDDLQIFDRG 305

Query: 305 DFSAVITG 312
            F   + G
Sbjct: 306 KFVEALLG 313


>gi|46908034|ref|YP_014423.1| cell division ABC transporter substrate-binding protein FtsY
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093842|ref|ZP_00231586.1| cell division ABC transporter, substrate-binding protein FtsY
           [Listeria monocytogenes str. 4b H7858]
 gi|217964045|ref|YP_002349723.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes HCC23]
 gi|226224406|ref|YP_002758513.1| SRP receptor alpha-subunit [Listeria monocytogenes Clip81459]
 gi|254826155|ref|ZP_05231156.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL J1-194]
 gi|254829201|ref|ZP_05233888.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL N3-165]
 gi|254852711|ref|ZP_05242059.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL R2-503]
 gi|254933275|ref|ZP_05266634.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes HPB2262]
 gi|255521156|ref|ZP_05388393.1| SRP receptor alpha-subunit [Listeria monocytogenes FSL J1-175]
 gi|290893067|ref|ZP_06556056.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL J2-071]
 gi|300763884|ref|ZP_07073881.1| cell division ABC transporter, substrate-binding protein FtsY
           [Listeria monocytogenes FSL N1-017]
 gi|46881304|gb|AAT04600.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47017783|gb|EAL08572.1| cell division ABC transporter, substrate-binding protein FtsY
           [Listeria monocytogenes str. 4b H7858]
 gi|217333315|gb|ACK39109.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes HCC23]
 gi|225876868|emb|CAS05577.1| Putative SRP receptor alpha-subunit [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258601613|gb|EEW14938.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL N3-165]
 gi|258606032|gb|EEW18640.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL R2-503]
 gi|290557427|gb|EFD90952.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL J2-071]
 gi|293584835|gb|EFF96867.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes HPB2262]
 gi|293595395|gb|EFG03156.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL J1-194]
 gi|300515620|gb|EFK42670.1| cell division ABC transporter, substrate-binding protein FtsY
           [Listeria monocytogenes FSL N1-017]
 gi|307571385|emb|CAR84564.1| cell division ABC transporter, substrate-binding protein [Listeria
           monocytogenes L99]
 gi|328466159|gb|EGF37316.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes 1816]
 gi|332312244|gb|EGJ25339.1| FtsY [Listeria monocytogenes str. Scott A]
          Length = 328

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 129/310 (41%), Positives = 190/310 (61%), Gaps = 12/310 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G    
Sbjct: 10  KITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 69

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116
            ++V+ L  +   +++S  +   DV E+I + L+ + +    +     H       VIL 
Sbjct: 70  MELVDTLRREVQLRNISDPK---DVQEVIVEKLVEIYQGDEKE-DEALHIEEDGLTVILF 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AIDQL++W +RT  D +    GS
Sbjct: 126 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A + A+A+K DVL+ DTAGRL N   LM  + K+ RV+ R  P+APH VL V
Sbjct: 186 DPAAVMFDAVQAAKARKADVLLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE ++
Sbjct: 246 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMD 305

Query: 297 DLEPFVAKDF 306
           DL+ F A ++
Sbjct: 306 DLQAFDANEY 315


>gi|313623285|gb|EFR93527.1| signal recognition particle-docking protein FtsY [Listeria innocua
           FSL J1-023]
          Length = 324

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 191/310 (61%), Gaps = 12/310 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G    
Sbjct: 6   KITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 65

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116
            ++V+ L  +   +++S  +   DV E+I + L+ + +  + +     H       VIL 
Sbjct: 66  MELVDTLRREVQLRNISDPK---DVQEVIVEKLVDIYQGDDKE-DETLHIEENGLTVILF 121

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AIDQL++W +RT  D +    GS
Sbjct: 122 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEGS 181

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL V
Sbjct: 182 DPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 241

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE ++
Sbjct: 242 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMD 301

Query: 297 DLEPFVAKDF 306
           DL+ F A ++
Sbjct: 302 DLQAFDANEY 311


>gi|222099069|ref|YP_002533637.1| Signal recognition particle-docking protein FtsY [Thermotoga
           neapolitana DSM 4359]
 gi|221571459|gb|ACM22271.1| Signal recognition particle-docking protein FtsY [Thermotoga
           neapolitana DSM 4359]
          Length = 294

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/294 (44%), Positives = 178/294 (60%), Gaps = 9/294 (3%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L KG   T       +  ++  ++LDD  RE+LE+LLI++D+G+   + I+E L      
Sbjct: 7   LKKGLQKTKDAFFGKVVSLLKGKKLDDETREKLEELLIQADVGIETTEYILERL----EE 62

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           KD +    L +    I      L++P N      P VI VVGVNG GKTT  GKL+K  +
Sbjct: 63  KDGNALEALRETLLEILNFDTALNEPDN-----PPFVITVVGVNGTGKTTSCGKLAKMFA 117

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           D G  V+LAA DTFR+AAI+QLK+W DR  A  +    G+D AA+A++A   A A+  DV
Sbjct: 118 DRGKSVVLAAADTFRAAAIEQLKLWGDRVGATVIAHSEGADPAAVAFDAVSHALARNKDV 177

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +IIDTAGRLH    LM  + K+ RV+K+  P APH VL V+DATTGQN L Q ++F    
Sbjct: 178 VIIDTAGRLHTKKNLMEELRKVHRVIKKKIPEAPHEVLLVIDATTGQNGLVQAKVFKDAV 237

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
             TG+I+TK+DGTA+GG ++ I     IP+ F+GVGE  +DL+PF    F  V+
Sbjct: 238 DVTGIILTKLDGTAKGGIVLAIAKELGIPIKFVGVGEKEDDLKPFDPNAFVEVL 291


>gi|168700596|ref|ZP_02732873.1| cell division protein FtsY [Gemmata obscuriglobus UQM 2246]
          Length = 304

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 118/286 (41%), Positives = 175/286 (61%), Gaps = 6/286 (2%)

Query: 31  GITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           G+ D++  + R+D+   EELE  L  +D+G      IV+ +      K+++ +   + V 
Sbjct: 22  GVFDLLRGKGRVDEAFLEELEKRLYLADVGTQATLLIVDRVRQGFRDKEITGEIETF-VK 80

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
             + ++L   S   N+  S  P V+++ GVNG GKTT I KL+ ++   G KV+LAA DT
Sbjct: 81  AQLRELLTDPSPGLNYQASG-PTVVMIAGVNGSGKTTSIAKLANRLQADGKKVLLAACDT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AA++QL +WA R   D V     +D +A+A++A ++A+A+  DVLI+DTAGRLH  +
Sbjct: 140 FRAAAVEQLTVWAGRLGCDIVKQGQNADPSAVAHDACEKAKARGFDVLIVDTAGRLHTQT 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + K+ R++ R  P APH VL VLDATTGQNAL Q E F      TG+I++K+DGT
Sbjct: 200 HLMKELEKIHRIVTRQIPGAPHEVLMVLDATTGQNALVQAEQFSKSVKCTGIILSKLDGT 259

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GG +  I     +PV F+G+GE I D+EPF   D  A +T   +
Sbjct: 260 AKGGAVFAIKQKLGLPVKFVGLGEKIEDMEPF---DPDAFVTALFE 302


>gi|116873238|ref|YP_850019.1| cell division ABC transporter, substrate- binding protein FtsY
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742116|emb|CAK21240.1| cell division ABC transporter, substrate-binding protein FtsY
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 328

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 117/261 (44%), Positives = 167/261 (63%), Gaps = 9/261 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHR 110
           +LI +D+G     ++V+ L  +   +++S  +   DV E+I + L+ + +   N D +  
Sbjct: 58  ILIGADVGFETVMELVDALRREVQLRNISDPK---DVQEVIVEKLVDIYQGDENEDETLN 114

Query: 111 PH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
                  VIL VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AIDQL++W +RT
Sbjct: 115 IEENGLTVILFVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERT 174

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             D +    GSD AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R 
Sbjct: 175 GVDVIKQAEGSDPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITRE 234

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P+APH VL VLDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IP
Sbjct: 235 IPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIP 294

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           V F+G+GE ++DL+ F A ++
Sbjct: 295 VKFVGLGEQMDDLQAFDANEY 315


>gi|313886512|ref|ZP_07820228.1| signal recognition particle-docking protein FtsY [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332300308|ref|YP_004442229.1| signal recognition particle-docking protein FtsY [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312924058|gb|EFR34851.1| signal recognition particle-docking protein FtsY [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332177371|gb|AEE13061.1| signal recognition particle-docking protein FtsY [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 319

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 112/264 (42%), Positives = 164/264 (62%), Gaps = 5/264 (1%)

Query: 54  IRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS 108
           + SD+GV    KI+    E +   +Y     ++ +L D V+ L+ +      + F    +
Sbjct: 53  VTSDVGVDTTLKIIKRIEERVARDKYVGTSELKSILRDEVAALLAENGTTDGESFTLPAN 112

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P+VI+VVGVNGVGKTT IGKL+ +    G +++L A DTFR+AAI+QL+IW +R    
Sbjct: 113 AHPYVIMVVGVNGVGKTTTIGKLAYQFKQQGKRIVLGAADTFRAAAIEQLEIWGERVGVP 172

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V  ++GSD A++A++  + A A+  DV+IIDTAGRLHN   LM  + K+ RV+ ++ P 
Sbjct: 173 VVKQQMGSDPASVAFDTLQSAVAQDADVVIIDTAGRLHNQVSLMNELSKIKRVMAKVVPD 232

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH VL VLD +TGQNA  Q + F A    + L +TK+DGTA+GG +I I    K+PV +
Sbjct: 233 APHEVLLVLDGSTGQNAFEQAKQFTAATDVSALAITKLDGTAKGGVVIGISDQFKVPVKY 292

Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312
           +G+GE I DL+ F  ++F   I G
Sbjct: 293 IGLGEKIEDLQVFRKREFVDSIFG 316


>gi|312906717|ref|ZP_07765717.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis DAPTO 512]
 gi|312910822|ref|ZP_07769658.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis DAPTO 516]
 gi|310627365|gb|EFQ10648.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis DAPTO 512]
 gi|311288845|gb|EFQ67401.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis DAPTO 516]
          Length = 442

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 117/261 (44%), Positives = 166/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 290

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+ ++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 291 VEVVRGNAGGDPAAVVFDAVERAKTEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 350

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 351 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 410

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 411 KLVGLGEGINDLEPFNANDFA 431


>gi|118602762|ref|YP_903977.1| signal recognition particle-docking protein FtsY [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567701|gb|ABL02506.1| signal recognition particle-docking protein FtsY [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 318

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 107/257 (41%), Positives = 161/257 (62%), Gaps = 9/257 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMP---LSKPFNWDFSH 109
           I +DIG+    KI+E +      K +     LY  + + + K+L+    L    N  F  
Sbjct: 61  ITADIGINTTDKILESVRKNASRKTLKDTESLYQFLKDTLDKLLIEDNQLKTNINETF-- 118

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              VIL+VGVNG GKTT+IGKL+K   + G  +MLAAGDTFR+AA++QLKIW +R     
Sbjct: 119 ---VILIVGVNGAGKTTLIGKLAKSFQNQGKSIMLAAGDTFRAAAVEQLKIWGERNQIPV 175

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G+D+A++ ++A++ AQAK +D+LI DTAGRLH    LM  + K+ RV+ + +  A
Sbjct: 176 IAQTTGADSASVIFDAYQSAQAKNIDILIADTAGRLHTQDNLMQELAKIKRVIAKQNADA 235

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH  + V+D ++GQNA+ Q   F+     +G+ +TK+DGTA+GG L  I     +P+ ++
Sbjct: 236 PHETMLVIDGSSGQNAINQAREFNKAVVLSGISITKLDGTAKGGVLFAIADELNLPIRYI 295

Query: 290 GVGEGINDLEPFVAKDF 306
           GVGEGI+DL+ F +K+F
Sbjct: 296 GVGEGIDDLKVFQSKEF 312


>gi|145220378|ref|YP_001131087.1| signal recognition particle-docking protein FtsY [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206542|gb|ABP37585.1| signal recognition particle-docking protein FtsY [Chlorobium
           phaeovibrioides DSM 265]
          Length = 317

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 128/308 (41%), Positives = 187/308 (60%), Gaps = 12/308 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV----AVAQKIVE 68
           + +LT+G   T   L+E +  +   R  +DD   EELE++L+ +D+GV    A+   I E
Sbjct: 9   LSRLTEGLGKTRETLREKLAVVTKGRTEIDDEFLEELENILVSADVGVETTLAIVDAITE 68

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWD--FSHRPHVILVVGVNGVGK 124
              T+ Y  +  +  +L D    I KMLM   +  P  +D     +P+VIL+VGVNG GK
Sbjct: 69  RAGTESYRSEDELNGMLMDE---IGKMLMESGEEHPVEFDAPLPAKPYVILIVGVNGAGK 125

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT + KL+     AG KVM+AA DTFR+AA +QL++WA+R     +    G+D A++ ++
Sbjct: 126 TTSVAKLASNYEKAGKKVMIAAADTFRAAAYEQLQVWAERAGVPLIGQGQGADPASVVFD 185

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A A+  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQN
Sbjct: 186 AVSAAVARNADVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQN 245

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A++Q   F      TG+++TK+DGTA+GG ++ I    K+PV ++GVGE I+DL+ F   
Sbjct: 246 AVQQAREFMKFVHVTGIVVTKLDGTAKGGIVLSISRELKLPVKYIGVGEKIDDLQLFDRS 305

Query: 305 DFSAVITG 312
            F   + G
Sbjct: 306 RFVGALLG 313


>gi|157150948|ref|YP_001450086.1| cell division protein FtsY [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075742|gb|ABV10425.1| cell division protein FtsY [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 529

 Score =  209 bits (531), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 116/272 (42%), Positives = 164/272 (60%), Gaps = 6/272 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R +D+   E+LE+LLI SD+GV VA  + EEL  +   ++      L  V  +I K++  
Sbjct: 251 RTVDEDFFEDLEELLITSDVGVQVASNLAEELRYEARLENAKKPDALRKV--IIEKLVDI 308

Query: 99  LSKPFNWD----FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
             K   ++    F     V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A
Sbjct: 309 YEKDGRYNEKINFQDGLTVMLFVGVNGVGKTTSIGKLAYKYKQEGKKVMLVAADTFRAGA 368

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           + QL  W  R     V      D A++ ++  ++AQA+ VD+L+IDTAGRL N   LMA 
Sbjct: 369 VAQLAEWGKRVDVPVVTGPEKCDPASVVFDGMERAQAENVDILMIDTAGRLQNKDNLMAE 428

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+ R++KR++P APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG 
Sbjct: 429 LEKIGRIIKRVNPDAPHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGV 488

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++ I     IPV  +G GE I+D+  F +++F
Sbjct: 489 VLAIRQELDIPVKLIGFGEKIDDIGEFNSENF 520


>gi|269797769|ref|YP_003311669.1| signal recognition particle-docking protein FtsY [Veillonella
           parvula DSM 2008]
 gi|282849043|ref|ZP_06258432.1| signal recognition particle-docking protein FtsY [Veillonella
           parvula ATCC 17745]
 gi|294793533|ref|ZP_06758670.1| signal recognition particle-docking protein FtsY [Veillonella sp.
           3_1_44]
 gi|269094398|gb|ACZ24389.1| signal recognition particle-docking protein FtsY [Veillonella
           parvula DSM 2008]
 gi|282581318|gb|EFB86712.1| signal recognition particle-docking protein FtsY [Veillonella
           parvula ATCC 17745]
 gi|294455103|gb|EFG23475.1| signal recognition particle-docking protein FtsY [Veillonella sp.
           3_1_44]
          Length = 311

 Score =  209 bits (531), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 117/276 (42%), Positives = 171/276 (61%), Gaps = 8/276 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR---VLYDVSEL 91
           +I   ++DD   ++LE +++ SD+G    + +++E+  +R   +  +     V+  + + 
Sbjct: 28  VIGYAQIDDDFLDDLEAVMLTSDLGPKTTEYLMKEI--RRGVTEGIINHTGDVMPFMEDR 85

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           I +ML+           H P VILVVGVNGVGKTT I KL+   +  G KV++AAGDTFR
Sbjct: 86  ITEMLIDQEDEITL---HHPEVILVVGVNGVGKTTTIAKLANYYTKEGKKVIIAAGDTFR 142

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           +AA DQL IWADR     V  + G+D AA+ Y+A + A+A+  D++I+DTAGRLH    L
Sbjct: 143 AAAADQLSIWADRVGVPIVKHKEGADPAAVVYDAMEAAKARNADLVIVDTAGRLHTKVNL 202

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + KM RV       APH  L VLD TTGQNA+ Q ++F       G+++TK+DGTA+
Sbjct: 203 MEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNAVSQAKLFGQAVPVNGIVVTKLDGTAK 262

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           GG +I I     +PV ++GVGEG++DL PF AK+F+
Sbjct: 263 GGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKEFA 298


>gi|171464208|ref|YP_001798321.1| signal recognition particle-docking protein FtsY [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193746|gb|ACB44707.1| signal recognition particle-docking protein FtsY [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 296

 Score =  209 bits (531), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 124/290 (42%), Positives = 170/290 (58%), Gaps = 12/290 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY- 86
           L++ +  +  S ++D    + LE+ LI+SD+G+   ++++ +L     ++  S    L  
Sbjct: 4   LRKTLGSLFKSTKIDQSWFDTLEESLIQSDVGLPTTEQLISKLRKAAKSEKASSPEALQA 63

Query: 87  ----DVSELIHKMLMPLSKP-FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
               +VS L+   + P   P F  D  + P V LVVGVNG GKTT IGKL +     G  
Sbjct: 64  LLIQEVSSLL-TTIEPSPNPLFTKDKPNTPEVWLVVGVNGAGKTTTIGKLCRLFQSQGKS 122

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+LAAGDTFR+AA +QL+ W  R   D +  E G DAAA+A++A   A ++K D+LIIDT
Sbjct: 123 VLLAAGDTFRAAARNQLQEWGGRNQVDVITQE-GGDAAAVAHDAIHAAISRKNDILIIDT 181

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL     LM  + K+ RV+ +  P APH  L VLD  TGQN L QV+ FHA  G TG+
Sbjct: 182 AGRLATQDHLMEELKKVKRVIDKALPGAPHHTLLVLDGNTGQNGLSQVKAFHAALGLTGI 241

Query: 262 IMTKMDGTARGGGLIPIVVT----HKIPVYFLGVGEGINDLEPFVAKDFS 307
           I+TK+DGTA+GG +  +  T     K  V  LG GEGI DL PF A  +S
Sbjct: 242 IVTKLDGTAKGGVICALAHTLQEGPKPAVLALGKGEGIEDLAPFTAGQYS 291


>gi|308173558|ref|YP_003920263.1| signal recognition particle [Bacillus amyloliquefaciens DSM 7]
 gi|307606422|emb|CBI42793.1| signal recognition particle (docking protein) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553509|gb|AEB24001.1| signal recognition particle-docking protein FtsY [Bacillus
           amyloliquefaciens TA208]
 gi|328911699|gb|AEB63295.1| signal recognition particle (docking protein) [Bacillus
           amyloliquefaciens LL3]
          Length = 329

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 126/310 (40%), Positives = 189/310 (60%), Gaps = 10/310 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+  ++ S   K   G   T       + +++S  R++D+   EELE++LI +D+G   
Sbjct: 9   EKITKQTDSVSEKFKDGLEKTRNSFSNRVNELVSRYRKVDEDFFEELEEVLIGADVGFTT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILV 116
             ++++EL  K+  K  ++Q    +V  +I + L+ +    N + S       R +VIL+
Sbjct: 69  VMELIDEL--KKEVKLKNIQDP-QEVQSVISEKLVEIYNSGNEEISELNIQDGRLNVILL 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ K+ + G  V+LAAGDTFR+ AI+QL++W +RT    +    GS
Sbjct: 126 VGVNGVGKTTTIGKLAHKLKNEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQAAGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A   A+A+  DVLI DTAGRL N   LM  + K+ RV++R  P APH VL  
Sbjct: 186 DPAAVIYDAVHAAKARGADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLA 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I     IPV  +G+GE ++
Sbjct: 246 LDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVD 305

Query: 297 DLEPFVAKDF 306
           DL+ F A+ +
Sbjct: 306 DLQRFDAESY 315


>gi|94265751|ref|ZP_01289487.1| Cell division transporter substrate-binding protein FtsY [delta
           proteobacterium MLMS-1]
 gi|93453726|gb|EAT04104.1| Cell division transporter substrate-binding protein FtsY [delta
           proteobacterium MLMS-1]
          Length = 367

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 115/278 (41%), Positives = 177/278 (63%), Gaps = 2/278 (0%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIH 93
            +  + +DD + EELE+LLI SD+G A A ++++    +    D+S    L ++  +L+ 
Sbjct: 84  FLGRKDIDDELFEELEELLITSDLGAATAMELLDRARARIKRDDLSEPAALREILQQLLL 143

Query: 94  KMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           + L+   +P         P VI+V+GVNGVGKTT IGKL+ K  +AG +V+L A DTFR+
Sbjct: 144 EYLVKAERPAELVMPESGPFVIMVLGVNGVGKTTTIGKLAWKFKNAGQRVLLVAADTFRA 203

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL+ WA+R   + V  + G+D +++ Y+AF  A+ +  DV+I+DTAGRLH    LM
Sbjct: 204 AAIEQLQAWAERVGVEVVAQQQGADPSSVIYDAFDYARPRDFDVIIVDTAGRLHTKVNLM 263

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+ RV+ +  P APH V+ V+DATTGQN + Q ++FH     +G+ +TK+DGTARG
Sbjct: 264 EELRKVKRVMSKKIPGAPHEVMLVIDATTGQNGISQAKLFHQAVDVSGIALTKLDGTARG 323

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           G ++ I     IP+ F+G+GE + DL  F  ++F + I
Sbjct: 324 GIVVNISREFNIPIRFIGIGEKMEDLRDFDPREFVSAI 361


>gi|157363112|ref|YP_001469879.1| signal recognition particle-docking protein FtsY [Thermotoga
           lettingae TMO]
 gi|157313716|gb|ABV32815.1| signal recognition particle-docking protein FtsY [Thermotoga
           lettingae TMO]
          Length = 294

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 182/297 (61%), Gaps = 10/297 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  +L  G +     L EG++ I+   ++ D + EELE+ L+ +D+G    + I+E+L
Sbjct: 1   MGFFERLKTGLSRARKALFEGLSQILKGSKISDEILEELEERLLMADVGYPTTEYIIEQL 60

Query: 71  LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              +    + +++ ++ D+     K+  P   PF         VI VVGVNG GKTT + 
Sbjct: 61  KQSKTNDALETLKEIMIDLLSFDSKLNSPDQPPF---------VITVVGVNGTGKTTTVA 111

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+      G  V+L A DTFR+AAI+QL+ W +RT +  +    G+D+AA+A++A   A
Sbjct: 112 KLAAYFQSTGKTVVLGAADTFRAAAIEQLREWGERTGSTVIYHSEGADSAAVAFDAVSHA 171

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DV+IIDTAGRLH    LM  + K+ RV+ ++ P APH VL V+DATTGQN L Q 
Sbjct: 172 KAREKDVVIIDTAGRLHTKKNLMEELKKVHRVIGKVVPGAPHEVLLVIDATTGQNGLVQA 231

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++F  +   TG+++TK+DGTA+GG  + I     +P+ F+G+GEG  DL+PF AK+F
Sbjct: 232 KVFKEMVDVTGIVITKLDGTAKGGISLAIKKELNLPIKFIGIGEGAEDLKPFDAKEF 288


>gi|315282801|ref|ZP_07871126.1| signal recognition particle-docking protein FtsY [Listeria marthii
           FSL S4-120]
 gi|313613556|gb|EFR87375.1| signal recognition particle-docking protein FtsY [Listeria marthii
           FSL S4-120]
          Length = 325

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 190/310 (61%), Gaps = 12/310 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G    
Sbjct: 7   KITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 66

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116
            ++V+ L  +   +++S  +   DV E+I + L+ + +    +     H       VIL 
Sbjct: 67  MELVDTLRREVQLRNISDPK---DVQEVIVEKLVEIYQGDEKE-DEALHIEEDGLTVILF 122

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AIDQL++W +RT  D +    GS
Sbjct: 123 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEGS 182

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL V
Sbjct: 183 DPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 242

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE ++
Sbjct: 243 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMD 302

Query: 297 DLEPFVAKDF 306
           DL+ F A ++
Sbjct: 303 DLQAFDANEY 312


>gi|226226848|ref|YP_002760954.1| cell division protein FtsY [Gemmatimonas aurantiaca T-27]
 gi|226090039|dbj|BAH38484.1| cell division protein FtsY [Gemmatimonas aurantiaca T-27]
          Length = 309

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 112/271 (41%), Positives = 169/271 (62%), Gaps = 6/271 (2%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ----RVLYDVSELIHKML 96
           +D+G  E LE LLI SD GV  +  +V E+  +    +V  +    + L D   + + + 
Sbjct: 35  VDEGSLEALETLLIESDFGVPTSLALVAEVERRHKRGEVKTEAEFRQALAD--GVANALR 92

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              + P     +  P V+LV+GVNG GKTT IGKL+ +    G +V++ A DTFR+ AID
Sbjct: 93  TGNADPAMAMAASGPTVLLVIGVNGAGKTTFIGKLAAQYRAQGKRVLVGAADTFRAGAID 152

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++WA+R+ A+FV  + GSD A++AY+A     A+ +D++I+DTAGRLH +  LM  + 
Sbjct: 153 QLRVWAERSGAEFVGGKPGSDPASVAYDAVDAGIARNMDLIIVDTAGRLHTSDDLMTELR 212

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           KM RV+ +  P APH +L VLD T GQNAL Q   F +    TG+++TK+DGTA+GG ++
Sbjct: 213 KMHRVIGKRMPEAPHEILLVLDGTIGQNALSQARTFSSAVPVTGVVVTKLDGTAKGGIVV 272

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            +     +P+ ++GVGE + DLEPF A  ++
Sbjct: 273 AVHEALNVPIKYVGVGEQVGDLEPFDADVYA 303


>gi|16800983|ref|NP_471251.1| hypothetical protein lin1917 [Listeria innocua Clip11262]
 gi|16414418|emb|CAC97147.1| lin1917 [Listeria innocua Clip11262]
          Length = 328

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 190/310 (61%), Gaps = 12/310 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G    
Sbjct: 10  KITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 69

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116
            ++V+ L  +   +++S  +   DV E+I + L+ + +    +     H       VIL 
Sbjct: 70  MELVDTLRREVQLRNISDPK---DVQEVIVEKLVDIYQGDEKE-DETLHIEENGLTVILF 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AIDQL++W +RT  D +    GS
Sbjct: 126 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL V
Sbjct: 186 DPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE ++
Sbjct: 246 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMD 305

Query: 297 DLEPFVAKDF 306
           DL+ F A ++
Sbjct: 306 DLQAFDANEY 315


>gi|239817341|ref|YP_002946251.1| signal recognition particle-docking protein FtsY [Variovorax
           paradoxus S110]
 gi|239803918|gb|ACS20985.1| signal recognition particle-docking protein FtsY [Variovorax
           paradoxus S110]
          Length = 302

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/309 (42%), Positives = 187/309 (60%), Gaps = 13/309 (4%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +E   W  KL  G   T      GI  +  + ++D+ + EELE  L+ +D GV   + ++
Sbjct: 3   AERKGWFDKLKTGLRKTG----TGIQAVFVNAQIDEALYEELESALLMADAGVKATEFLL 58

Query: 68  EEL---LTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           ++L   + ++ A D + V+R+L D    I  +L PL KP        P VI+V GVNG G
Sbjct: 59  DDLRGRVKRQMATDAAQVKRLLADA---ITDLLQPLEKPLVIG-QFTPTVIMVAGVNGAG 114

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K ++  G  V+LAA DTFR+AA +QL +WADR + + V  E G D +A+++
Sbjct: 115 KTTSIGKLTKHLASEGASVLLAAADTFRAAAREQLLVWADRNTVEIVSQE-GGDPSAVSF 173

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A    +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQ
Sbjct: 174 DAVTAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRVVTKADATAPHEVLLVIDGNTGQ 233

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV  F    G TGL++TK+DGTA+GG L  I     IPVYF+GVGE + DLE F A
Sbjct: 234 NALAQVRAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLETFNA 293

Query: 304 KDFSAVITG 312
           ++F+  + G
Sbjct: 294 REFALALLG 302


>gi|16803843|ref|NP_465328.1| hypothetical protein lmo1803 [Listeria monocytogenes EGD-e]
 gi|47097386|ref|ZP_00234937.1| cell division ABC transporter, substrate-binding protein FtsY
           [Listeria monocytogenes str. 1/2a F6854]
 gi|224500033|ref|ZP_03668382.1| hypothetical protein LmonF1_10299 [Listeria monocytogenes Finland
           1988]
 gi|224501396|ref|ZP_03669703.1| hypothetical protein LmonFR_02555 [Listeria monocytogenes FSL
           R2-561]
 gi|254831596|ref|ZP_05236251.1| hypothetical protein Lmon1_09593 [Listeria monocytogenes 10403S]
 gi|254899500|ref|ZP_05259424.1| hypothetical protein LmonJ_06789 [Listeria monocytogenes J0161]
 gi|254912361|ref|ZP_05262373.1| cell division ABC transporter [Listeria monocytogenes J2818]
 gi|254936688|ref|ZP_05268385.1| cell division ABC transporter [Listeria monocytogenes F6900]
 gi|284802249|ref|YP_003414114.1| hypothetical protein LM5578_2005 [Listeria monocytogenes 08-5578]
 gi|284995391|ref|YP_003417159.1| hypothetical protein LM5923_1956 [Listeria monocytogenes 08-5923]
 gi|16411257|emb|CAC99881.1| lmo1803 [Listeria monocytogenes EGD-e]
 gi|47014234|gb|EAL05216.1| cell division ABC transporter, substrate-binding protein FtsY
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258609284|gb|EEW21892.1| cell division ABC transporter [Listeria monocytogenes F6900]
 gi|284057811|gb|ADB68752.1| hypothetical protein LM5578_2005 [Listeria monocytogenes 08-5578]
 gi|284060858|gb|ADB71797.1| hypothetical protein LM5923_1956 [Listeria monocytogenes 08-5923]
 gi|293590342|gb|EFF98676.1| cell division ABC transporter [Listeria monocytogenes J2818]
          Length = 328

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 190/310 (61%), Gaps = 12/310 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G    
Sbjct: 10  KITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 69

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116
            ++V+ L  +   +++S  +   DV E+I + L+ + +    +     H       VIL 
Sbjct: 70  MELVDTLRREVQLRNISDPK---DVQEVIVEKLVEIYQGDEKE-DEALHIEEDGLTVILF 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AIDQL++W +RT  D +    GS
Sbjct: 126 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL V
Sbjct: 186 DPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE ++
Sbjct: 246 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMD 305

Query: 297 DLEPFVAKDF 306
           DL+ F A ++
Sbjct: 306 DLQAFDANEY 315


>gi|311068116|ref|YP_003973039.1| signal recognition particle-docking protein FtsY [Bacillus
           atrophaeus 1942]
 gi|310868633|gb|ADP32108.1| signal recognition particle-docking protein FtsY [Bacillus
           atrophaeus 1942]
          Length = 329

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 125/305 (40%), Positives = 189/305 (61%), Gaps = 10/305 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+  ++ S   K  +G   T    ++ + D++S  R++D+   EELE++LI +D+G   
Sbjct: 9   EKITKQTDSVSEKFKEGLEKTRSSFQDKVNDLVSRYRKVDEDFFEELEEVLIGADVGFTT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILV 116
             ++++EL  K+  K  ++Q    +V  +I + L+ +    +   S       R +VIL+
Sbjct: 69  VMELIDEL--KKEVKLRNIQDP-QEVQSVISEKLVEIYNSGDEQVSDLNIQVGRLNVILL 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ K+ + G  V+LAAGDTFR+ AI+QL++W +RT    +    GS
Sbjct: 126 VGVNGVGKTTTIGKLAHKLKEEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQAAGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A   A+A++ DVLI DTAGRL N   LM  + K+ RV++R  P APH VL  
Sbjct: 186 DPAAVIYDAVHAAKAREADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLA 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I     IPV  +G+GE ++
Sbjct: 246 LDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVD 305

Query: 297 DLEPF 301
           DL+ F
Sbjct: 306 DLQQF 310


>gi|257125121|ref|YP_003163235.1| signal recognition particle-docking protein FtsY [Leptotrichia
           buccalis C-1013-b]
 gi|257049060|gb|ACV38244.1| signal recognition particle-docking protein FtsY [Leptotrichia
           buccalis C-1013-b]
          Length = 396

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 108/256 (42%), Positives = 160/256 (62%), Gaps = 3/256 (1%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHR 110
           I+SDIG+ +  ++VEEL +    K +     +YD  + + K  +  +   N      + +
Sbjct: 135 IQSDIGMNMTMQLVEELESSVSRKKLKTSEQIYDELKELLKAKLIYNDEENTKLKLKNGK 194

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            +++LVVGVNGVGKTT IGK++KK+ D+G KV++ AGDTFR+AAI+Q++ W  RT  + V
Sbjct: 195 LNILLVVGVNGVGKTTSIGKIAKKLKDSGKKVIIGAGDTFRAAAIEQVEEWGKRTGVEVV 254

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               GSD AA+ ++  K A+ +  DV I+DTAGRLHN   LM  + K+ ++++       
Sbjct: 255 KQAHGSDPAAVIFDTVKTAKNRGFDVAILDTAGRLHNKRDLMKELEKINKIIREQSGETD 314

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L V+D+TTGQN L Q  +F+ +   TG+I+TK DGTA+GG + PI    K P+ F+G
Sbjct: 315 FETLLVIDSTTGQNGLEQARIFNEIVDLTGIILTKFDGTAKGGIIFPITSELKKPIKFIG 374

Query: 291 VGEGINDLEPFVAKDF 306
           VGEGI DL  F  K+F
Sbjct: 375 VGEGIEDLREFDKKEF 390


>gi|28210933|ref|NP_781877.1| signal recognition particle receptor ftsY [Clostridium tetani E88]
 gi|28203372|gb|AAO35814.1| signal recognition particle receptor ftsY [Clostridium tetani E88]
          Length = 303

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 101/196 (51%), Positives = 140/196 (71%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P +ILV+GVNGVGKTT IGK+S K+ + G KV++AAGDTFR+AAI+QL++W+ R   D +
Sbjct: 103 PEIILVIGVNGVGKTTSIGKMSHKLKNNGFKVLMAAGDTFRAAAIEQLEVWSQRAGVDII 162

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + GSD AA+ +++ + A+A+K DVLI DTAGRLHN   LM  + K+ R+++R    A 
Sbjct: 163 RQQEGSDPAAVVFDSIQAAKARKTDVLICDTAGRLHNKKNLMDELSKINRIVEREYSEAN 222

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                VLDATTGQNAL+Q + F  V    G+I+TK+DGTA+GG +I I     IPV  +G
Sbjct: 223 KKTYLVLDATTGQNALQQAKQFTQVCNVDGIILTKLDGTAKGGIVISIKHQLNIPVKLIG 282

Query: 291 VGEGINDLEPFVAKDF 306
           VGEGI+DL+ F +++F
Sbjct: 283 VGEGIDDLQNFNSREF 298


>gi|296135230|ref|YP_003642472.1| signal recognition particle-docking protein FtsY [Thiomonas
           intermedia K12]
 gi|295795352|gb|ADG30142.1| signal recognition particle-docking protein FtsY [Thiomonas
           intermedia K12]
          Length = 368

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 180/301 (59%), Gaps = 7/301 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W  +L  G   T      GI+ +    ++D+ + EELE  LI +D G+     ++ +L  
Sbjct: 73  WFNRLRSGLRKTG----SGISGLFGGSKIDEALYEELESALIMADAGMPATTALLADLRR 128

Query: 73  K-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + + A+  +  +V   +++ +  +L PL KP +      P V+++VGVNG GKTT IGKL
Sbjct: 129 RVKSARAETPAQVRGLLADALADLLSPLQKPLDIG-RQNPTVLMMVGVNGAGKTTTIGKL 187

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +  A  KV+LAAGDTFR+AA +QL  W  R     V S+ G D AA+A++A    +A
Sbjct: 188 TQHLLRADEKVLLAAGDTFRAAAREQLVAWGQRNQVQ-VISQDGGDPAAVAFDAVSAGKA 246

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +++DV+I+DTAGRL     LM  + K+ RV  +    APH +L V+DA  GQNAL QV  
Sbjct: 247 REMDVVIVDTAGRLPTQLHLMEELKKVKRVTAKAMDGAPHEILLVIDANNGQNALAQVRA 306

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG+A+GG +  I     +PVYF+GVGE ++DL+ F AK F+  + 
Sbjct: 307 FDDALGLTGLVITKLDGSAKGGVIAAIARERPVPVYFIGVGESLDDLQTFDAKAFARALV 366

Query: 312 G 312
           G
Sbjct: 367 G 367


>gi|241890123|ref|ZP_04777421.1| signal recognition particle-docking protein FtsY [Gemella
           haemolysans ATCC 10379]
 gi|241863745|gb|EER68129.1| signal recognition particle-docking protein FtsY [Gemella
           haemolysans ATCC 10379]
          Length = 353

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/303 (42%), Positives = 180/303 (59%), Gaps = 16/303 (5%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           ES     K  KG   +       + ++ISS R +++   E+LE+LLI+SD+      ++V
Sbjct: 33  ESQFVTEKFKKGLKKSRDNFSNALNNLISSYREINEEFFEDLEELLIQSDVSYNTVLELV 92

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---------SKPFNWDFSHRPHVILVVG 118
           +      Y K  S ++ L + SEL   ++  L             N+       V L VG
Sbjct: 93  D------YLKVESQRQNLKEPSELQSMIIEKLVDVYMEGTVKSELNYAPEKELSVFLFVG 146

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+  +   G KV++AAGDTFR+ AIDQL +WA R+ AD V S  G+D+
Sbjct: 147 VNGVGKTTSIGKLAHNLKKEGKKVLIAAGDTFRAGAIDQLDVWAKRSGADIVKSHEGADS 206

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A + A+AK  DVL+ DTAGRL N   LM  + K++RV+K+  P  PH VL  +D
Sbjct: 207 AAIIFDAIQSAKAKGYDVLLCDTAGRLQNKDHLMKELEKIVRVIKKEVPEGPHEVLLTID 266

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN + Q + F  V+  TG+I+TK+DGTA+GG +I I     IPV  +G+GE I+DL
Sbjct: 267 ATTGQNGILQAKTFKEVSDVTGVILTKLDGTAKGGIVIAIKKELGIPVKLVGLGENIDDL 326

Query: 299 EPF 301
           E F
Sbjct: 327 EVF 329


>gi|329767266|ref|ZP_08258793.1| hypothetical protein HMPREF0428_00490 [Gemella haemolysans M341]
 gi|328836933|gb|EGF86580.1| hypothetical protein HMPREF0428_00490 [Gemella haemolysans M341]
          Length = 354

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 128/303 (42%), Positives = 180/303 (59%), Gaps = 16/303 (5%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           ES     K  KG   +       + ++ISS R +++   E+LE+LLI+SD+      ++V
Sbjct: 33  ESQFVTEKFKKGLKKSRDNFSNALNNLISSYREINEEFFEDLEELLIQSDVSYNTVLELV 92

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---------SKPFNWDFSHRPHVILVVG 118
           +      Y K  S ++ L + SEL   ++  L             N+       V L VG
Sbjct: 93  D------YLKVESQRQNLKEPSELQSMIIEKLVDVYMEGTVKSELNYAPEKELSVFLFVG 146

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+  +   G KV++AAGDTFR+ AIDQL +WA R+ AD V S  G+D+
Sbjct: 147 VNGVGKTTSIGKLAHNLKKEGKKVLIAAGDTFRAGAIDQLDVWAKRSGADIVKSHEGADS 206

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A + A+AK  DVL+ DTAGRL N   LM  + K++RV+K+  P  PH VL  +D
Sbjct: 207 AAIIFDAIQSAKAKGYDVLLCDTAGRLQNKDHLMKELEKIVRVIKKEVPEGPHEVLLTID 266

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN + Q + F  V+  TG+I+TK+DGTA+GG +I I     IPV  +G+GE I+DL
Sbjct: 267 ATTGQNGILQAKTFKEVSDVTGVILTKLDGTAKGGIVIAIKKELGIPVKLVGLGENIDDL 326

Query: 299 EPF 301
           E F
Sbjct: 327 EVF 329


>gi|254421607|ref|ZP_05035325.1| signal recognition particle-docking protein FtsY, putative
           [Synechococcus sp. PCC 7335]
 gi|196189096|gb|EDX84060.1| signal recognition particle-docking protein FtsY, putative
           [Synechococcus sp. PCC 7335]
          Length = 570

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 187/314 (59%), Gaps = 6/314 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ E ++W+ KL +G   T   L   +  I+    L+D   +E+E LL+++D+GVA   
Sbjct: 257 QISVEEITWLNKLRQGLDKTRRGLVNQLKSIVGQGPLNDEAVDEIEALLLQADVGVAATD 316

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGVN 120
           KI+  L +K   + +   + +  +  L+  ML  PL    N  F+       + L+ GVN
Sbjct: 317 KIISALQSKLREETLPPDQAIDYLKSLLRDMLESPLEGKHNLTFTPEKDKLSIWLMTGVN 376

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT IGKL+   + +  + ++ A DTFR+AA++Q+K+W DR+  + + +    +D A
Sbjct: 377 GAGKTTTIGKLAHIATKSEFRCLIGAADTFRAAAVEQVKVWGDRSGVEVIANPGKNTDPA 436

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A ++ +++L+IDTAGRL N   LM  + K+ +++ +  P A    L VLDA
Sbjct: 437 AVVFDAISAANSRNIELLLIDTAGRLQNKKNLMDELSKVRKIIDKKAPGANVESLLVLDA 496

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           T GQN LRQ ++F   A  +G+++TK+DGTARGG  + +V    +P+ F+G GEGI DL 
Sbjct: 497 TLGQNGLRQAQVFAEAAQLSGVVLTKLDGTARGGVALAVVEQLGLPIRFIGAGEGIEDLR 556

Query: 300 PFVAKDF-SAVITG 312
           PF + +F  A+++G
Sbjct: 557 PFSSYEFIEALLSG 570


>gi|78189179|ref|YP_379517.1| cell division transporter substrate-binding protein FtsY
           [Chlorobium chlorochromatii CaD3]
 gi|78171378|gb|ABB28474.1| signal recognition particle-docking protein FtsY [Chlorobium
           chlorochromatii CaD3]
          Length = 317

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 128/308 (41%), Positives = 187/308 (60%), Gaps = 12/308 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV----AVAQKIVE 68
           + +L +G   T   L+E ++ I   +  +DD   EELE +L+ +D+GV    A+   I E
Sbjct: 9   LSRLKEGLEKTRDTLREKLSVITKGKTEIDDEFLEELETILVGADVGVETTLAIVDAITE 68

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----RPHVILVVGVNGVGK 124
               + Y  +  + R+L D    I +ML   S     DF      +P+VILVVGVNG GK
Sbjct: 69  RAKKETYHSETELNRMLIDE---IQQMLQESSDEHPVDFDAPLPAKPYVILVVGVNGAGK 125

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT I KL+     AG KV++AA DTFR+AA +QL+IWADR     +    G+D A++ ++
Sbjct: 126 TTSIAKLAHNYDQAGKKVIIAAADTFRAAAYEQLQIWADRAGVPMIGQGQGADPASVVFD 185

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A ++  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQN
Sbjct: 186 AVSAAVSRNADVVLVDTAGRLHNKSHLMEELAKIMRVAKKRIPEAPHEVLLVLDGTTGQN 245

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A++Q + F      TGL++TK+DGT++GG ++ I    K+PV ++GVGE I+DL+ F  +
Sbjct: 246 AVQQAQEFTKFVQVTGLVVTKLDGTSKGGIVLSISRDLKLPVKYIGVGEKIDDLQLFDRR 305

Query: 305 DFSAVITG 312
           +F   + G
Sbjct: 306 NFVGALLG 313


>gi|315303703|ref|ZP_07874218.1| signal recognition particle-docking protein FtsY [Listeria ivanovii
           FSL F6-596]
 gi|313627930|gb|EFR96548.1| signal recognition particle-docking protein FtsY [Listeria ivanovii
           FSL F6-596]
          Length = 323

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 191/310 (61%), Gaps = 12/310 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G    
Sbjct: 5   KITQQTDSVTGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFETV 64

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VILV 116
            ++VE L  +   +++S  +   DV E+I + L+ + +  + +     H       VIL 
Sbjct: 65  MELVETLRREVQLRNISDPK---DVQEVIVEKLVDIYQG-DEEEEEALHIEKDGLTVILF 120

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AI+QL++W +RT  D +    GS
Sbjct: 121 VGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIEQLEVWGERTGVDVIKQAEGS 180

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL V
Sbjct: 181 DPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 240

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE ++
Sbjct: 241 LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELHIPVKFVGLGEQMD 300

Query: 297 DLEPFVAKDF 306
           DL+ F A ++
Sbjct: 301 DLQAFDANEY 310


>gi|1237016|dbj|BAA10978.1| Srb [Bacillus subtilis]
 gi|1237019|dbj|BAA08616.1| Srb [Bacillus subtilis]
          Length = 329

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 125/305 (40%), Positives = 184/305 (60%), Gaps = 10/305 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+  ++ S   K   G   T    +  + D++S  R++D+   EELE++LI +D+G   
Sbjct: 9   EKITKQTDSVSEKFKDGLEKTRNSFQNKVNDLVSRYRKVDEDFFEELEEVLISADVGFTT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILV 116
             ++++EL  K+  K  ++Q    +V  +I + L+ +    +   S       R +VIL+
Sbjct: 69  VMELIDEL--KKEVKRRNIQDP-KEVQSVISEKLVEIYNSGDEQISELNIQDGRLNVILL 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ KM   G  V+LAAGDTFR+ AI+QL++W +RT    +    GS
Sbjct: 126 VGVNGVGKTTTIGKLAHKMKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQTAGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A   A+A+  DVLI DTAGRL N   LM  + K+ RV++R  P  PH VL  
Sbjct: 186 DPAAVIYDAVHAAKARNADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPETPHEVLLA 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I     IPV  +G+GE ++
Sbjct: 246 LDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVD 305

Query: 297 DLEPF 301
           DL+ F
Sbjct: 306 DLQEF 310


>gi|218291549|ref|ZP_03495423.1| signal recognition particle-docking protein FtsY [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238644|gb|EED05869.1| signal recognition particle-docking protein FtsY [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 305

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 183/297 (61%), Gaps = 3/297 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +  KG   +   + + +  +   RRLDD V EE+E+ LI SD+GV  A ++VE +  +  
Sbjct: 6   RFRKGLEKSRAAMADRLLSVFRGRRLDDSVFEEMEETLILSDVGVDTAVELVEAIRREAR 65

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            + +     L DV  ++  M+  L  P    +    P V+LVVGVNG GKTT IGKL+  
Sbjct: 66  RRRIERAEDLPDV--MVDVMVEFLGPPAEMAENPDGPTVVLVVGVNGAGKTTTIGKLAHA 123

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +V+LAA DTFR+AAI+QL +W +R   D V    GSD AA+ Y+A + A+A++ 
Sbjct: 124 YKSQGKRVILAAADTFRAAAIEQLMVWGERVGVDVVRHAQGSDPAAVVYDAIQAAKARRC 183

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I DTAGRL N + LM  + K+ +V +R  P APH VL V+D TTGQN L Q  +F  
Sbjct: 184 DLVICDTAGRLQNKAHLMNELAKIRKVAERELPGAPHEVLLVIDGTTGQNGLVQARVFKE 243

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           V   TG+++TK+DGTA+GG + PIV    IPV ++G+GEG++DL+PF  + F+  I 
Sbjct: 244 VVRVTGIVVTKLDGTAKGGIVFPIVREEGIPVKWIGLGEGMDDLQPFDPRMFAEAIC 300


>gi|94263346|ref|ZP_01287161.1| Cell division transporter substrate-binding protein FtsY [delta
           proteobacterium MLMS-1]
 gi|93456301|gb|EAT06431.1| Cell division transporter substrate-binding protein FtsY [delta
           proteobacterium MLMS-1]
          Length = 373

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 115/278 (41%), Positives = 177/278 (63%), Gaps = 2/278 (0%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIH 93
            +  + +DD + EELE+LLI SD+G A A ++++    +    D+S    L ++  +L+ 
Sbjct: 90  FLGRKDIDDELFEELEELLITSDLGAATAMELLDRARARIKRDDLSEPAALREILQQLLL 149

Query: 94  KMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           + L+   +P         P VI+V+GVNGVGKTT IGKL+ K  +AG +V+L A DTFR+
Sbjct: 150 EYLVKAERPAELVMPESGPFVIMVLGVNGVGKTTTIGKLAWKFKNAGQRVLLVAADTFRA 209

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL+ WA+R   + V  + G+D +++ Y+AF  A+ +  DV+I+DTAGRLH    LM
Sbjct: 210 AAIEQLQAWAERVGVEVVAQQQGADPSSVIYDAFDYARPRDFDVIIVDTAGRLHTKVNLM 269

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+ RV+ +  P APH V+ V+DATTGQN + Q ++FH     +G+ +TK+DGTARG
Sbjct: 270 EELRKVKRVMSKKIPGAPHEVMLVIDATTGQNGISQAKLFHQAVDVSGIALTKLDGTARG 329

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           G ++ I     IP+ F+G+GE + DL  F  ++F + I
Sbjct: 330 GIVVNISREFNIPIRFIGIGEKMEDLRDFDPREFVSAI 367


>gi|319789859|ref|YP_004151492.1| signal recognition particle-docking protein FtsY [Thermovibrio
           ammonificans HB-1]
 gi|317114361|gb|ADU96851.1| signal recognition particle-docking protein FtsY [Thermovibrio
           ammonificans HB-1]
          Length = 480

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 118/271 (43%), Positives = 179/271 (66%), Gaps = 1/271 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
              R +D+ + EELE+ LI +D+GV    ++++ L  +   + +     L ++ +   K 
Sbjct: 196 FKGRSVDESLFEELEERLILADVGVKTTMELIDYLRQEAKKRKIKTSDKLLELLKERLKE 255

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           ++   +    + S +P VILV+GVNGVGKTT IGKL+K++ D GL V++AA DTFR+AAI
Sbjct: 256 ILRNCRG-ELNLSEKPSVILVLGVNGVGKTTTIGKLAKQLKDKGLSVVVAAADTFRAAAI 314

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL++WA+R  A  V ++ G+D AA+ ++A +  +AK  DVLI+DTAGRLHN   LM  I
Sbjct: 315 EQLEVWAERAGARIVKAQEGTDPAAVVFDAIQSIKAKGEDVLIVDTAGRLHNKERLMKEI 374

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K+ +V+ R  P  P  +L VLDA TGQNAL Q E+F  +   TG+++TK+DGTA+GG +
Sbjct: 375 HKIKKVIGREFPGQPAEILLVLDANTGQNALSQAEVFKKITDITGIVLTKLDGTAKGGIV 434

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + I  T +IP+ ++G+GE I DL PF  ++F
Sbjct: 435 VSICNTLRIPIKYVGIGEKIEDLRPFDPEEF 465


>gi|313885165|ref|ZP_07818917.1| signal recognition particle-docking protein FtsY [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619856|gb|EFR31293.1| signal recognition particle-docking protein FtsY [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 337

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 114/298 (38%), Positives = 179/298 (60%), Gaps = 6/298 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG----VAVAQKIVE 68
           + K  KG   +     + I D+ +  R LD+   E+LE+ LI +D+G    +A+   I +
Sbjct: 29  LEKYDKGMEKSRKNFSDRIADLFTGFRELDEEFYEDLEETLISADVGFNMTIALTDAIRD 88

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           E+ ++   K   V+RV+ +    +++     +   N +    P VIL VGVNGVGKTT +
Sbjct: 89  EIESQNVYKGEDVKRVMIETMVKVYEDHEHENVSLNEN-PDGPTVILFVGVNGVGKTTSV 147

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK+  ++ ++G KV++AA DTFR+ A++QL +W  R     V      D A++ ++A K 
Sbjct: 148 GKIGYQLKESGKKVIMAAADTFRAGAVEQLSVWGQRLDIPVVTGIDQGDPASVVFDAVKA 207

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    D L++DTAGRL   + LM  + K+ R+++R +P+    VL VLDATTGQNAL Q
Sbjct: 208 AKEGNYDYLLVDTAGRLQTKANLMQELAKIKRIIERENPNGVQEVLLVLDATTGQNALIQ 267

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F+     TGL++TK+DGTA+GG ++ I     IPV F+G+GEG NDL+PF A+++
Sbjct: 268 AKQFNEATEITGLVLTKLDGTAKGGVILSIRYELDIPVKFIGLGEGANDLQPFNAEEY 325


>gi|326791393|ref|YP_004309214.1| signal recognition particle-docking protein FtsY [Clostridium
           lentocellum DSM 5427]
 gi|326542157|gb|ADZ84016.1| signal recognition particle-docking protein FtsY [Clostridium
           lentocellum DSM 5427]
          Length = 419

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 133/307 (43%), Positives = 198/307 (64%), Gaps = 7/307 (2%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
           +E   +I++L  G   T   + +G+ D++S+ R +D+ + EELE+ LI +D GV     I
Sbjct: 112 TEKKGFIKRLFGGLTKTRDSILKGVDDVLSNFRHIDEDLYEELEEALIMADFGVETTLHI 171

Query: 67  VEELLTKRYAKDVSVQRVL-YDVSELIHKML--MPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +E L  K   + ++    L   + E+I K+L   P  +  N    + P VILV+GVNGVG
Sbjct: 172 MESLKEKVKQEKITEPSALKVALQEIITKLLTDQPREEILN---PNGPTVILVIGVNGVG 228

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGK+S        KV++AA DTFR+AAI+QL++W +R   D +  E G+DAAA+ +
Sbjct: 229 KTTSIGKMSHLFKSQHKKVLVAAADTFRAAAIEQLQVWVNRAGVDLIKHEEGTDAAAVVF 288

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+++K DVLI DTAGRL N + LM  + K+ R++ R  P A   +L VLDATTGQ
Sbjct: 289 DAIAAAKSRKSDVLICDTAGRLQNKTNLMKELEKISRIIAREYPEAKKEILIVLDATTGQ 348

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA++QV++F  VA   G+I+TK+DGTA+GG ++ I  + K+PV ++GVGE INDL+PF A
Sbjct: 349 NAIQQVKLFKEVADINGIILTKLDGTAKGGAIVGIYESLKVPVKYIGVGEQINDLQPFDA 408

Query: 304 KDFSAVI 310
           + F+  +
Sbjct: 409 EIFATAL 415


>gi|225848693|ref|YP_002728856.1| signal recognition particle-docking protein FtsY
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644095|gb|ACN99145.1| signal recognition particle-docking protein FtsY
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 304

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 116/296 (39%), Positives = 184/296 (62%), Gaps = 2/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  K+  G   T  +L EG   I   R++D+ + EE+E +L+++D+GV+   +I++ L 
Sbjct: 4   SFFEKIKTGLEKTKKQLIEGFNKISFGRKIDESLFEEIETVLLKADVGVSATTEIIDFLR 63

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + ++    L ++  E ++ +L             +P VIL +GVNG GKTT +GK
Sbjct: 64  KESKKRGITEGEQLKELLKEKLYDILKDCQSSLKL-LGEKPDVILFLGVNGSGKTTTVGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  + + G  V+LAA DTFR+AAIDQL++WA+R     V  + G+D +A+ ++A   A+
Sbjct: 123 LAWMLKNEGKSVVLAAADTFRAAAIDQLEVWANRVGVRIVKHQPGADPSAVVFDAINSAK 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +K  D++I+DTAGRLH    LM  + K+ R +++  P+ P   L VLD T GQN++ Q +
Sbjct: 183 SKGDDIVIVDTAGRLHTKEHLMKELQKIKRTIQKFSPNQPVETLLVLDGTLGQNSINQAK 242

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +F      +G+++TK+DGTA+GG +IPI    KIPV F+GVGEG+ DL+PF AK F
Sbjct: 243 VFKEATDVSGIVITKLDGTAKGGAIIPICRDLKIPVKFIGVGEGLEDLQPFDAKMF 298


>gi|237756196|ref|ZP_04584762.1| signal recognition particle-docking protein FtsY
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691643|gb|EEP60685.1| signal recognition particle-docking protein FtsY
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 304

 Score =  208 bits (529), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 116/296 (39%), Positives = 185/296 (62%), Gaps = 2/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  K+ KG   T  +L EG + I   R++D+ + E++E +L+++D+GV   Q+I++ L 
Sbjct: 4   SFFEKVKKGLEKTKKQLAEGFSKISFGRKIDESLFEDIEVVLLKADVGVKATQEIIQFLR 63

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + ++    L ++  E I+ +L        +    +P V+L +G+NG GKTT +GK
Sbjct: 64  EESKKRKITEGEQLKELLKEKIYDILKDCEGRLTF-LGEKPDVLLFLGINGSGKTTTVGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G  V+LAA DTFR+AAIDQL++WA+R     V  + G+D +A+ ++A   A+
Sbjct: 123 LAYMLKQDGKSVVLAAADTFRAAAIDQLEVWANRVGVRIVKHQQGADPSAVVFDAINSAK 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRLH    LM  + K+ + + +   + P   L VLD T GQN++ Q +
Sbjct: 183 AKGDDVVIVDTAGRLHTKEHLMKELQKIKKTIAKFFENQPVETLLVLDGTIGQNSINQAK 242

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F      +G+I+TK+DGT++GG +IPI    KIP+ F+GVGEGI+DL+PF AK+F
Sbjct: 243 TFKEATDVSGIIITKLDGTSKGGAIIPICKDLKIPIKFIGVGEGIDDLQPFDAKEF 298


>gi|323340723|ref|ZP_08080975.1| cell division protein FtsY [Lactobacillus ruminis ATCC 25644]
 gi|323091846|gb|EFZ34466.1| cell division protein FtsY [Lactobacillus ruminis ATCC 25644]
          Length = 433

 Score =  208 bits (529), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 127/309 (41%), Positives = 180/309 (58%), Gaps = 17/309 (5%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E  +   +  KG A +       I  ++++ R +D+   ++LE+ LI +D+G   A  I 
Sbjct: 118 EEKTEEERYDKGLAKSRKGFGAKINALLANFRHVDEDFFDDLEETLIEADVGYETAMNIS 177

Query: 68  EELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFN------WDFSHR-PHVILVV 117
           +EL  +   R AK  S      DVS+ I + L+ L +           F+ + P V L V
Sbjct: 178 DELRDEVKLRNAKKKS------DVSDAIIERLVNLYEESGKGEDNALHFAKQGPTVFLFV 231

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +  + G KV+LAAGDTFR+ AI+QL  W  R   D V     SD
Sbjct: 232 GVNGVGKTTTIGKLAHRYKEEGKKVLLAAGDTFRAGAIEQLAEWGRRVGVDVVKKPEQSD 291

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A  +A+ +  D+L++DTAGRL N   LM  + K+ RV+ R  P APH VL  L
Sbjct: 292 PAAVVYDAVVKAKQENYDILLVDTAGRLQNKVNLMKELDKIKRVITREIPDAPHEVLLAL 351

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQNAL Q + F  V   TG+++TK+DGTARGG ++ I    K+PV  +G+GE ++D
Sbjct: 352 DATTGQNALTQAKQFKEVTDVTGIVLTKLDGTARGGIVLAIRNELKLPVKLVGLGEQMDD 411

Query: 298 LEPFVAKDF 306
           L  F  ++F
Sbjct: 412 LRDFDPQEF 420


>gi|258511331|ref|YP_003184765.1| signal recognition particle-docking protein FtsY [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478057|gb|ACV58376.1| signal recognition particle-docking protein FtsY [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 306

 Score =  208 bits (529), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 183/297 (61%), Gaps = 3/297 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +  KG   +   + + +  +   RRLDD V EE+E+ LI SD+GV  A ++VE +  +  
Sbjct: 6   RFRKGLEKSRAAMADRLLSVFRGRRLDDSVFEEMEETLILSDVGVDTAVELVEAIRREAR 65

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            + +     L DV  ++  M+  L  P    +    P V+LVVGVNG GKTT IGKL+  
Sbjct: 66  RRRIERAEDLPDV--MVDVMVEFLGPPAEMAENPDGPTVVLVVGVNGAGKTTTIGKLAHA 123

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +V+LAA DTFR+AAI+QL +W +R   D V    GSD AA+ Y+A + A+A++ 
Sbjct: 124 YKSQGKRVILAAADTFRAAAIEQLMVWGERVGVDVVRHAQGSDPAAVVYDAIQAAKARRC 183

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I DTAGRL N + LM  + K+ +V +R  P APH VL V+D TTGQN L Q  +F  
Sbjct: 184 DLVICDTAGRLQNKAHLMNELAKIRKVAERELPGAPHEVLLVIDGTTGQNGLVQARVFKE 243

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           V   TG+++TK+DGTA+GG + PIV    IPV ++G+GEG++DL+PF  + F+  I 
Sbjct: 244 VVRVTGIVVTKLDGTAKGGIVFPIVREEGIPVKWIGLGEGMDDLQPFDPRMFAEAIC 300


>gi|262282629|ref|ZP_06060397.1| cell division protein FtsY [Streptococcus sp. 2_1_36FAA]
 gi|262261920|gb|EEY80618.1| cell division protein FtsY [Streptococcus sp. 2_1_36FAA]
          Length = 438

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 115/272 (42%), Positives = 164/272 (60%), Gaps = 6/272 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R +D+   E+LE+LLI SD+GV VA  + EEL  +   ++      L  V  +I K++  
Sbjct: 160 RTVDEDFFEDLEELLITSDVGVQVASNLAEELRYEARLENAKKPDALRKV--IIEKLVDI 217

Query: 99  LSKPFNWD----FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
             K   ++    F     V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A
Sbjct: 218 YEKDGRYNEKINFQDGLTVMLFVGVNGVGKTTSIGKLAYKYKQEGKKVMLVAADTFRAGA 277

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           + QL  W  R     V      D A++ ++  ++AQA+ +D+L+IDTAGRL N   LMA 
Sbjct: 278 VAQLAEWGKRVDVPVVTGPEKCDPASVVFDGIERAQAENIDILMIDTAGRLQNKDNLMAE 337

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+ R++KR++P APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG 
Sbjct: 338 LEKIGRIIKRVNPDAPHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGV 397

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++ I     IPV  +G GE I+D+  F +++F
Sbjct: 398 VLAIRQELDIPVKLIGFGEKIDDIGEFNSENF 429


>gi|256960442|ref|ZP_05564613.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis Merz96]
 gi|256950938|gb|EEU67570.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis Merz96]
          Length = 331

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/261 (44%), Positives = 166/261 (63%), Gaps = 8/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 62  LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 119

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R  
Sbjct: 120 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAG 179

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V    G D AA+ ++A ++A+ ++ DVL++DTAGRL N   LM  + K+ RV++R  
Sbjct: 180 VEVVRGNAGGDPAAVVFDAVERAKTEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREI 239

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTGQNA+ Q + F      TGL++TK+DGTA+GG +I I     +PV
Sbjct: 240 PDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPV 299

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GEGINDLEPF A DF+
Sbjct: 300 KLVGLGEGINDLEPFNANDFA 320


>gi|325479547|gb|EGC82643.1| signal recognition particle-docking protein FtsY [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 385

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/307 (40%), Positives = 189/307 (61%), Gaps = 5/307 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAV 62
            K   E++ +  K+  G   T       + ++ +   ++DD + +ELE++LI +DIG+  
Sbjct: 75  NKNTDENVGFFSKIKNGLTKTRDSFTSNLKNLFTRNVKIDDDLYDELEEILISADIGMTS 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSE--LIHKM-LMPLSKPFNWDFSHRPHVILVVGV 119
             +IV++L  +   +++     +Y V +  +I K+    LS   N   S    + LV+GV
Sbjct: 135 TVEIVDQLRDEIKKRNIKNSEEIYPVLKEIMIEKLDENNLSNELNIKDSELS-IFLVIGV 193

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+  + + G  VMLAA DTFR+AAI+QL  WADR+  + V  + GSD +
Sbjct: 194 NGVGKTTTIGKLANSLKNEGKSVMLAAADTFRAAAIEQLGEWADRSDIEMVAHQEGSDPS 253

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A K A++K VDVLI DTAGRLHN   LM  + K+ + +     +A    L +LDA
Sbjct: 254 AVIFDAIKSAKSKNVDVLICDTAGRLHNKKNLMKELEKINKTIDTHAKNANRDNLLILDA 313

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q+  F  V   +GLI+TK+DG+A+GG + P+ V  K+PV ++GVGEG+NDLE
Sbjct: 314 TTGQNAVSQLREFKNVTDISGLILTKLDGSAKGGVIFPLQVELKVPVKYIGVGEGVNDLE 373

Query: 300 PFVAKDF 306
            F ++ F
Sbjct: 374 HFDSESF 380


>gi|220907732|ref|YP_002483043.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 7425]
 gi|219864343|gb|ACL44682.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 7425]
          Length = 606

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 190/308 (61%), Gaps = 5/308 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + ++ E ++W++KL +G   T   L   +  I+    L+     E+E LL+++D+GVA  
Sbjct: 292 EDISVEEITWLQKLRRGLGKTRRGLVNQLKAIVGQGPLNQDAVLEIESLLLQADVGVAAT 351

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFS---HRPHVILVVGV 119
            +I++ L  K   + +     +  + +++  +L  PL + ++  F+   ++ ++ L+ GV
Sbjct: 352 DRIIQALQDKMRQETLPPDGAIAYLKQILRGILDQPLQQGYSPTFAPEKNQLNIWLMAGV 411

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NGVGKTT IGK++   + +G K ++ A DTFR+AA++Q+KIW +R+  + + +    +D 
Sbjct: 412 NGVGKTTTIGKIAHVATTSGYKCLIGAADTFRAAAVEQVKIWGERSQVEVIANPGKNTDP 471

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQA++V++L++DTAGRL N   LM  + K+ R++ +   +A    L VLD
Sbjct: 472 AAVVFDAITAAQAREVELLLVDTAGRLQNKQNLMEELRKIRRIIDKKATNAQVEALLVLD 531

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN LRQ ++F   A  TG+++TK+DGTA+GG  + +V    +P+ F+G GEGI DL
Sbjct: 532 ATLGQNGLRQAQVFAEAAQLTGVVITKLDGTAKGGVALAVVQELGLPIRFIGAGEGITDL 591

Query: 299 EPFVAKDF 306
            PF + +F
Sbjct: 592 RPFSSYEF 599


>gi|326803884|ref|YP_004321702.1| signal recognition particle-docking protein FtsY [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650906|gb|AEA01089.1| signal recognition particle-docking protein FtsY [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 341

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/303 (40%), Positives = 172/303 (56%), Gaps = 16/303 (5%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG----VAVAQKIVE 68
             K  KG   T     E + D+ +  R +D+   ++LE+ LI SD+G    +A++  + E
Sbjct: 34  FEKYDKGVEKTRKSFSERMNDLFAGFREVDEEFFDDLEEALITSDVGFDMTLALSDAVRE 93

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-----PHVILVVGVNGVG 123
           E+  +   K   V+  +      I +M+    K  +   S +     P V+L VGVNGVG
Sbjct: 94  EVQRRNVTKGEDVKNTV------IEEMVKIYEKGQDGSVSLKENPDGPTVMLFVGVNGVG 147

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT I K++      G KV+LAAGDTFR+ A++QL  W  R  A  V  +   D +A+ Y
Sbjct: 148 KTTTIAKVAHHYISQGKKVLLAAGDTFRAGAVEQLNTWGQRVGAPVVSGKANGDPSAVVY 207

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A  +A  +  D L+IDTAGRL N   LM  + KM RV+KR  P APH  L VLDATTGQ
Sbjct: 208 DAVHKAVNEDYDYLLIDTAGRLQNKKNLMNELDKMNRVIKREIPDAPHETLLVLDATTGQ 267

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F+     TGL++TK+DGTARGG +  I     +PV  +G+GEG++DL+PF  
Sbjct: 268 NALVQAKEFNKTVDITGLVLTKLDGTARGGVIFAIRYELDLPVKLIGLGEGMDDLQPFDG 327

Query: 304 KDF 306
           + F
Sbjct: 328 EKF 330


>gi|149174765|ref|ZP_01853390.1| cell division protein FtsY [Planctomyces maris DSM 8797]
 gi|148846459|gb|EDL60797.1| cell division protein FtsY [Planctomyces maris DSM 8797]
          Length = 315

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 173/302 (57%), Gaps = 12/302 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L +G   T   L+  + D+  +   LDD   E+ E  LI++D+GV  +  I EE+  K 
Sbjct: 6   RLKRGLEKTKEVLRTDVRDLFKAGEILDDQKIEQFEARLIKTDMGVVASSAICEEIRKKH 65

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPH---VILVVGVNGVGK 124
             + V +  +   V E I + L+       WD S         P    VILV GVNGVGK
Sbjct: 66  GGRTVILDEIEETVKEKI-RTLLEGEGDTKWDISAPLSPLNKNPDGVTVILVAGVNGVGK 124

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT I KL+  +      V+LAAGDTFR+AA++QL +WADR   + V    G+D A++AY 
Sbjct: 125 TTSIAKLANLILKQNKTVLLAAGDTFRAAAVEQLTMWADRLGCEIVTRPDGTDPASVAYS 184

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++A    VD LIIDTAGRL  ++ LM  + K+ RV+ +  P+APH  L VLDATTGQN
Sbjct: 185 GCERALETGVDYLIIDTAGRLQTHTNLMEELEKIKRVVSKKIPNAPHESLLVLDATTGQN 244

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            + Q E F      +GLI+ K+DGTARGG  + I     IPV ++GVGE I+DLE F ++
Sbjct: 245 GISQAEHFSKSIECSGLILAKLDGTARGGVTVAIRQKMGIPVKYVGVGEQIDDLELFNSQ 304

Query: 305 DF 306
            F
Sbjct: 305 GF 306


>gi|145628344|ref|ZP_01784145.1| cell division protein FtsY [Haemophilus influenzae 22.1-21]
 gi|144980119|gb|EDJ89778.1| cell division protein FtsY [Haemophilus influenzae 22.1-21]
          Length = 204

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/194 (50%), Positives = 138/194 (71%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +IL+VGVNGVGKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R     V  
Sbjct: 1   MILMVGVNGVGKTTTIGKLARKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVSQ 60

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             GSD+A++ ++A + A A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH 
Sbjct: 61  STGSDSASVIFDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHE 120

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           ++  LDA TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVG
Sbjct: 121 IMLTLDAGTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVG 180

Query: 293 EGINDLEPFVAKDF 306
           E I DL  F AK+F
Sbjct: 181 EKIEDLREFNAKEF 194


>gi|189345804|ref|YP_001942333.1| signal recognition particle-docking protein FtsY [Chlorobium
           limicola DSM 245]
 gi|189339951|gb|ACD89354.1| signal recognition particle-docking protein FtsY [Chlorobium
           limicola DSM 245]
          Length = 317

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/312 (41%), Positives = 188/312 (60%), Gaps = 20/312 (6%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I +L +G + T    +E ++ I   +  +D+   EELE +L+ +D+GV     IVE + T
Sbjct: 9   ISRLKEGLSKTRDTFREKLSVITQGKTEIDEEFLEELETILVAADVGVETTLAIVEAI-T 67

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMP----------LSKPFNWD--FSHRPHVILVVGVN 120
           +R  K+       Y   E +++MLM            + P ++D      P+VILVVGVN
Sbjct: 68  ERAKKET------YRSGEELNRMLMEEIQQLLLDTDTAHPLDFDAPLPETPYVILVVGVN 121

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT + KL+     AG KV++AA DTFR+AA +QLKIWADR     +    G+D A+
Sbjct: 122 GAGKTTSVAKLAHNYDKAGKKVIIAAADTFRAAAYEQLKIWADRAGVPLIGQGQGADPAS 181

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A   A ++ VDV+++DTAGRLHN + LM  + K++RV K+  P APH VL VLD T
Sbjct: 182 VVYDAVSSAVSRNVDVVLVDTAGRLHNKAHLMEELAKIMRVAKKKVPAAPHEVLLVLDGT 241

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA++Q   F      TGL++TK+DGT++GG ++ I    K+PV ++GVGE I+DL+ 
Sbjct: 242 TGQNAVQQAREFTRFVNVTGLVLTKLDGTSKGGIVLSISRELKLPVKYIGVGEKIDDLQL 301

Query: 301 FVAKDFSAVITG 312
           F  + F   + G
Sbjct: 302 FDREKFVEALVG 313


>gi|294339325|emb|CAZ87681.1| Cell division protein ftsY homolog [Thiomonas sp. 3As]
          Length = 369

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/303 (39%), Positives = 179/303 (59%), Gaps = 11/303 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W  +L  G   T      GI+ +    ++D+ + EELE  LI +D G+     ++ +L  
Sbjct: 73  WFSRLRSGLRKTG----SGISGLFGGSKIDEALYEELESALIMADAGMPATTALLADL-- 126

Query: 73  KRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +R  K    +   +V   +++ +  +L PL KP +      P V+++VGVNG GKTT IG
Sbjct: 127 RRRVKSTRAETPAQVRGLLADALADLLSPLQKPLDIG-RQNPTVLMMVGVNGAGKTTTIG 185

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++ +  A  KV+LAAGDTFR+AA +QL  W  R     V S+ G D AA+A++A    
Sbjct: 186 KLTQHLLRADEKVLLAAGDTFRAAAREQLVAWGQRNQVQ-VISQDGGDPAAVAFDAVSAG 244

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+++DV+I+DTAGRL     LM  + K+ RV  +    APH +L V+DA  GQNAL QV
Sbjct: 245 KAREIDVVIVDTAGRLPTQLHLMEELKKVKRVTAKAMDGAPHEILLVIDANNGQNALAQV 304

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F    G TGL++TK+DG+A+GG +  I     +PVYF+GVGE ++DL+ F AK F+  
Sbjct: 305 RAFDDALGLTGLVITKLDGSAKGGVIAAIARERPVPVYFIGVGESLDDLQTFDAKAFARA 364

Query: 310 ITG 312
           + G
Sbjct: 365 LVG 367


>gi|281419892|ref|ZP_06250891.1| signal recognition particle-docking protein FtsY [Prevotella copri
           DSM 18205]
 gi|281406019|gb|EFB36699.1| signal recognition particle-docking protein FtsY [Prevotella copri
           DSM 18205]
          Length = 317

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/264 (42%), Positives = 165/264 (62%), Gaps = 17/264 (6%)

Query: 54  IRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-----N 104
           I SD+GV    KI+    E +   +Y     + R+L +      ++ + LS+       +
Sbjct: 53  ITSDVGVETTVKIIRRIEERVARDKYVSTSELNRILRE------EIAILLSENHSDDLAD 106

Query: 105 WDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           W+    H+P+VILVVGVNGVGKTT IGKL+ +   AG KV+L A DTFR+AA++Q+ IW 
Sbjct: 107 WELPADHKPYVILVVGVNGVGKTTTIGKLAYQFKKAGKKVVLGAADTFRAAAVEQICIWG 166

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           +R     V  ++GSD A++A++  + A+A   DV++IDTAGRLHN   LM  + K+  V+
Sbjct: 167 ERVGVPVVKQQMGSDPASVAFDTLQSAKANGADVVLIDTAGRLHNKVNLMNELKKIKEVM 226

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           K++ P AP  V+ VLD +TGQNA  Q + F AV   + L +TK+DGTA+GG +I I    
Sbjct: 227 KKVMPEAPDEVMLVLDGSTGQNAFEQAKQFSAVTNISSLAITKLDGTAKGGVVIGISDQL 286

Query: 283 KIPVYFLGVGEGINDLEPFVAKDF 306
           K+PV ++G+GEG+ DL+ F   +F
Sbjct: 287 KVPVKYIGLGEGMEDLQLFNKTEF 310


>gi|221065349|ref|ZP_03541454.1| signal recognition particle-docking protein FtsY [Comamonas
           testosteroni KF-1]
 gi|220710372|gb|EED65740.1| signal recognition particle-docking protein FtsY [Comamonas
           testosteroni KF-1]
          Length = 392

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 184/302 (60%), Gaps = 11/302 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L  G   T       I  + +  ++DD + EELED L+ +D GV   Q ++E+L 
Sbjct: 97  SWMERLKAGLRKTG----SSIATVFTGTQIDDRLYEELEDALLMADTGVKATQHLLEDL- 151

Query: 72  TKRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            KR  K+        V   +++ +  +L PL KP      H P VI+V GVNG GKTT I
Sbjct: 152 -KRRVKETKTTEPAAVKALLADALTDLLRPLEKPLTIG-EHTPTVIMVAGVNGAGKTTSI 209

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K ++D    V+LAA DTFR+AA +QL +WA+R + + + S+ G D AA++++A   
Sbjct: 210 GKLTKHLADGEQSVLLAAADTFRAAAREQLGVWANRNTVEII-SQDGGDPAAVSFDAVSA 268

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+K DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL Q
Sbjct: 269 GKARKKDVVLVDTAGRLPTQLHLMEELKKIKRVVSKADGTAPHEVLLVIDGNTGQNALTQ 328

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V  F      TGLI+TK+DGTA+GG L  I     +PVYF+GVGE I DLE F A++F+ 
Sbjct: 329 VRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKIEDLETFSAREFAQ 388

Query: 309 VI 310
            +
Sbjct: 389 AL 390


>gi|327538567|gb|EGF25229.1| signal recognition particle-docking protein FtsY [Rhodopirellula
           baltica WH47]
          Length = 337

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/300 (40%), Positives = 177/300 (59%), Gaps = 9/300 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISS--RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           K+  G   T   L   I D+  +  R +D+    EL   LIR+D+G   A +I + +   
Sbjct: 39  KMKTGLQKTRRVLGTDIRDLFKAEGRLVDEDFLGELYARLIRTDMGAGPAGRIRDRVAKD 98

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
              + V ++ V+  ++E I + L    K  + D +     P VILVVGVNG GKTT IGK
Sbjct: 99  YRGRVVQLEEVVQTITEDIREQL----KQDHGDLAKADSPPTVILVVGVNGSGKTTSIGK 154

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS  +   G K++L AGDTFR+AA++QL IW++R   + V    G D A++AY+  ++A 
Sbjct: 155 LSHHLVSQGHKIVLGAGDTFRAAAVEQLTIWSERIGCEIVTGPSGVDPASVAYQTTEKAI 214

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D  IIDTAGRL     LM  + K+ RV+ +  P APH VL VLDAT GQNA+ Q +
Sbjct: 215 EIGADYAIIDTAGRLQTQGKLMQELEKIRRVIDKKLPGAPHEVLLVLDATAGQNAISQAK 274

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F + AG TG+I++K+DG+A+GG ++PI    ++PV F+G+GEGI D+  F    F+A +
Sbjct: 275 GFSSAAGCTGIILSKLDGSAKGGVVLPIREQFELPVKFVGLGEGIEDMTKFDPDTFAAAL 334


>gi|283782239|ref|YP_003372994.1| signal recognition particle-docking protein FtsY [Pirellula staleyi
           DSM 6068]
 gi|283440692|gb|ADB19134.1| signal recognition particle-docking protein FtsY [Pirellula staleyi
           DSM 6068]
          Length = 343

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/310 (40%), Positives = 181/310 (58%), Gaps = 7/310 (2%)

Query: 2   SNQKVA--SESLSWIRKLTKGFASTSLKLKEGITDII--SSRRLDDGVREELEDLLIRSD 57
           S++K A  ++ +    +L      T+  L   I D+     R +DD + + L  +L+++D
Sbjct: 26  SSEKPAEPAQPVGIFARLKSALKKTTDLLNTDIRDLFKKEGRLVDDEMLDSLYSILVKTD 85

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILV 116
           +GV  A +I + + T    + V +  V+  V SEL   +  PL +P  +  +  P V+LV
Sbjct: 86  MGVGPAGRIRDRVKTDFRGRVVHLTDVIASVKSELRELVAQPL-QPITY-AAEGPTVVLV 143

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT I KL+      G  V+L AGDTFR+AA +QL IWA+R  A+ V  E G 
Sbjct: 144 VGVNGSGKTTSIAKLTSYFRQQGKSVVLGAGDTFRAAACEQLTIWAERLGANIVKGEAGG 203

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+A+ A   A A+K DV IIDTAGRL   + LM  + K+ RV+ +  P APH V+ V
Sbjct: 204 DPAAVAHRAVATAIAEKADVCIIDTAGRLQTQTNLMQQLEKIHRVIGKQIPEAPHEVILV 263

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQNA+ Q + F   A  TG+++ K+DG+A+GG +IPI     IPV F+G+GE   
Sbjct: 264 LDATAGQNAISQAQGFSTAAHCTGIVLAKLDGSAKGGVVIPIREKFSIPVKFVGLGEKAT 323

Query: 297 DLEPFVAKDF 306
           DL  F +  F
Sbjct: 324 DLAIFDSDQF 333


>gi|110637071|ref|YP_677278.1| signal recognition particle-docking protein FtsY [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279752|gb|ABG57938.1| signal recognition particle-docking protein FtsY [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 320

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/298 (41%), Positives = 177/298 (59%), Gaps = 9/298 (3%)

Query: 17  LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T       ++  ++   ++DD V + LE++L+ SD+G+    KI+  +   R 
Sbjct: 15  LNKGLEKTKTSFFSKLSKAVLGKTQVDDEVLDNLEEVLVTSDVGIETTLKIIGRI-QDRA 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLM----PLSKPFNW-DFSHRPHVILVVGVNGVGKTTVI 128
           +KD  VS   +   + E I  +L+    P SK F   +    P+VI+VVGVNGVGKTT I
Sbjct: 74  SKDKYVSTSELNTILKEEIAALLVGDTVPDSKEFEIPETGGLPYVIMVVGVNGVGKTTTI 133

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G KV+L A DTFR+AA++QL++W  R     +   + +D AA+A++A KQ
Sbjct: 134 GKLASHYHKNGKKVVLGAADTFRAAAVEQLELWGKRVGVPVISHGMNTDPAAVAFDAVKQ 193

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A   K DV+IIDTAGRLH    LM  + K+ RV+++  P APH V+ VLD +TGQNA+ Q
Sbjct: 194 AVDMKADVVIIDTAGRLHTKVNLMNELSKIKRVIQKFIPEAPHDVMLVLDGSTGQNAVIQ 253

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              F      T L +TK+DGTA+GG +I I    +IPV ++GVGE + DL+ F   +F
Sbjct: 254 AREFTKATEVTSLAITKLDGTAKGGVVIGISDQFQIPVRYIGVGEKMEDLQVFNKHEF 311


>gi|255020683|ref|ZP_05292745.1| Signal recognition particle receptor protein FtsY (alpha subunit)
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969919|gb|EET27419.1| Signal recognition particle receptor protein FtsY (alpha subunit)
           [Acidithiobacillus caldus ATCC 51756]
          Length = 403

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 113/295 (38%), Positives = 184/295 (62%), Gaps = 7/295 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI---VEELL 71
           +L +G   +  ++   +  ++  ++ +DD + E+LE +L+++D+GVA  + I   V + +
Sbjct: 102 RLREGLRRSREQISASVEQLVLGKKVIDDELLEDLEAILLQADMGVAATRDIMDRVTQRV 161

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +   KD +  R    + + +  +L P ++P+      +  V+++VG+NG GKTT IGKL
Sbjct: 162 RRNELKDPAALRAA--IRQALLDILQPRAQPWT-PAKGQTQVLMMVGINGAGKTTTIGKL 218

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G  ++L AGDTFR+AA++QL  WA+R     +    G+D+A++ Y+A+  A+A
Sbjct: 219 AARWKAEGYSILLGAGDTFRAAAVEQLTGWAERVQVPVIAQGAGADSASVLYDAYAAARA 278

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D++I DTAGRLH    LM  + K+ RVL + DP APH +  VLDA TGQNAL+QV  
Sbjct: 279 RGIDLVIADTAGRLHTQGHLMEELKKVKRVLAKQDPGAPHQIWLVLDAGTGQNALQQVRQ 338

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G TG+ +TK+DGTA+GG +  +     +P+ F+GVGEG+ DL PF A+ F
Sbjct: 339 FHEAVGLTGICITKLDGTAKGGVVAAVAKALPLPIRFIGVGEGVEDLRPFSAEAF 393


>gi|188591100|ref|YP_001795700.1| signal recognition particle gtpase [Cupriavidus taiwanensis LMG
           19424]
 gi|170937994|emb|CAP62978.1| Signal recognition particle GTPase [Cupriavidus taiwanensis LMG
           19424]
          Length = 385

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/300 (39%), Positives = 175/300 (58%), Gaps = 5/300 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W+++L  G + TS  L      +    ++D+ + EELE  L+ +D GV   + ++ EL  
Sbjct: 91  WMQRLRTGLSKTSRNL----GTLFVGVKVDEDLFEELETALLMADAGVEATEYLLGELRK 146

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +  A+ +     +      +   L+   +        +P V+++ GVNG GKTT IGKL 
Sbjct: 147 RVKAERIETAEGVKTALRELLTRLLRPLEKTMELGREQPLVMMIAGVNGAGKTTSIGKLC 206

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K       KV+LAAGDTFR+AA +QL IW +R +   V  E G D AA+ ++A   A+A+
Sbjct: 207 KHFQRYDQKVLLAAGDTFRAAAREQLAIWGERNNVTVVAQESG-DPAAVIFDAVNAAKAR 265

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +D+++ DTAGRL     LM  + K+ RV+ +  P APH VL V+DA TGQNAL+Q   F
Sbjct: 266 GIDIVMADTAGRLPTQLHLMEELKKVKRVISKAMPSAPHEVLLVIDANTGQNALQQTRAF 325

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
               G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++F+  + G
Sbjct: 326 DDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFKAEEFADALLG 385


>gi|91227501|ref|ZP_01261838.1| cell division protein FtsY [Vibrio alginolyticus 12G01]
 gi|91188525|gb|EAS74817.1| cell division protein FtsY [Vibrio alginolyticus 12G01]
          Length = 403

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/263 (42%), Positives = 173/263 (65%), Gaps = 1/263 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   + S +++D+ + EELE+ L+ +D+G+    KI+  L 
Sbjct: 96  SFFARLKRSLSRTKANIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMNTTTKIINNLT 155

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K    D+     LY +  E + ++L  + +P   D +  P+VIL+VGVNGVGKTT IGK
Sbjct: 156 EKATRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSNKTPYVILMVGVNGVGKTTTIGK 215

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ Y+A + A+
Sbjct: 216 LAKQFQTQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAK 275

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 276 ARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 335

Query: 251 MFHAVAGTTGLIMTKMDGTARGG 273
           +F  VA  TG+ +TK+DGTA+GG
Sbjct: 336 LFSDVAPLTGITLTKLDGTAKGG 358


>gi|194466491|ref|ZP_03072478.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri 100-23]
 gi|194453527|gb|EDX42424.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri 100-23]
          Length = 506

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 115/262 (43%), Positives = 160/262 (61%), Gaps = 10/262 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDF 107
           +LI SD+G  +A K+ +EL   R    +   +   DVS +I + ++ L     +  N D 
Sbjct: 236 MLIESDVGYDMAMKLSDEL---REEVKLQNAKSKQDVSNVIIEKMVELYDEAGQDENPDL 292

Query: 108 S---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           +     P VI+ VGVNG GKTT IGK++      G KV+LAA DTFR+ A +QL +WA R
Sbjct: 293 TMAKEGPTVIMFVGVNGAGKTTTIGKMAALFKKQGKKVLLAAADTFRAGATEQLDVWAKR 352

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              D V      D AA+ ++A K+A+ +K D+L +DTAGRL N   LM  + KM R+L R
Sbjct: 353 DGVDIVTGPENGDPAAVVFDAVKRAKDEKYDILFVDTAGRLQNKVNLMNELAKMKRILNR 412

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
             P APH VL VLDATTGQNAL Q ++F      TG+++TK+DGTARGG ++ I     +
Sbjct: 413 EIPDAPHEVLLVLDATTGQNALNQAKLFKESTDVTGIVLTKLDGTARGGIVLAIRNELHL 472

Query: 285 PVYFLGVGEGINDLEPFVAKDF 306
           PV ++G+GE ++DL+ F A DF
Sbjct: 473 PVKYVGLGEKVDDLQKFDAGDF 494


>gi|299531836|ref|ZP_07045237.1| signal recognition particle-docking protein FtsY [Comamonas
           testosteroni S44]
 gi|298720156|gb|EFI61112.1| signal recognition particle-docking protein FtsY [Comamonas
           testosteroni S44]
          Length = 385

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/302 (42%), Positives = 185/302 (61%), Gaps = 11/302 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +W+ +L  G   T       I  + +  ++DD + EELED L+ +D GV   Q ++E+L 
Sbjct: 90  NWMERLKAGLRKTG----SSIATVFTGTQIDDRLYEELEDALLMADTGVKATQHLLEDL- 144

Query: 72  TKRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            KR  K+        V   +++ +  +L PL KP +    H P VI+V GVNG GKTT I
Sbjct: 145 -KRRVKETKTTEPAAVKALLADALTDLLRPLEKPLSIG-EHTPTVIMVAGVNGAGKTTSI 202

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K ++D    V+LAA DTFR+AA +QL +WA+R + + + S+ G D AA++++A   
Sbjct: 203 GKLTKHLADGEQSVLLAAADTFRAAAREQLGVWANRNTVEII-SQDGGDPAAVSFDAVSA 261

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+K DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL Q
Sbjct: 262 GKARKKDVVLVDTAGRLPTQLHLMEELKKIKRVVSKADGTAPHEVLLVIDGNTGQNALTQ 321

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V  F      TGLI+TK+DGTA+GG L  I     +PVYF+GVGE I DLE F A++F+ 
Sbjct: 322 VRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKIEDLETFSAREFAQ 381

Query: 309 VI 310
            +
Sbjct: 382 AL 383


>gi|220903931|ref|YP_002479243.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868230|gb|ACL48565.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 547

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/298 (41%), Positives = 181/298 (60%), Gaps = 3/298 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K+T+G A T  +   G+  + S    LDD   EELE+L I +D+G   + ++VE L  K 
Sbjct: 249 KITEGLARTREQFARGLDTLFSGHGELDDAFWEELEELFIMADLGYEPSMELVERL--KE 306

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            A+   V       + L+ ++      P      + P V+L++GVNGVGKTT I KL+ +
Sbjct: 307 RARKEKVTEASGMRALLMAEVEEIFRAPRRIAAVNPPEVVLMIGVNGVGKTTTIAKLAHR 366

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G KVM+AA DTFR+AAI+QL++WA+R  A F     G+D A++AYEA  +A  + V
Sbjct: 367 ARMQGKKVMIAAADTFRAAAIEQLQVWAERVGALFHAKSAGADPASVAYEAMDRAVREGV 426

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D+L +DTAGRL     LM  + K+ +VL +  P APH  + V+DATTGQNAL Q ++F  
Sbjct: 427 DILFVDTAGRLQTKVNLMEELTKIRQVLGKKHPGAPHRSILVIDATTGQNALSQTKLFKE 486

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            AG   LI+TK+DGTA+GG  I + + H +P+ F+G+GE + DL PF  +D++  + G
Sbjct: 487 AAGVDELILTKLDGTAKGGVAIAVAMQHHLPITFVGLGEKMEDLRPFNGEDYARALLG 544


>gi|83589811|ref|YP_429820.1| signal recognition particle-docking protein FtsY [Moorella
           thermoacetica ATCC 39073]
 gi|83572725|gb|ABC19277.1| signal recognition particle-docking protein FtsY [Moorella
           thermoacetica ATCC 39073]
          Length = 311

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/304 (40%), Positives = 189/304 (62%), Gaps = 7/304 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +++  +L +G   T   L   + ++++ S RLDD   +ELE++L+ +D+G   + ++VE 
Sbjct: 1   MNFFSRLKEGLNKTRENLTRRVGELLAGSSRLDDDFFDELEEILLTADVGARTSMELVER 60

Query: 70  LLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           L  +R  +D  +     V   + E + +ML        W     P VILVVGVNG GKTT
Sbjct: 61  L--RREVRDRKITDPAAVGSLLQEEVARMLGEEVPRLVW-APEPPTVILVVGVNGAGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ + +  G +V+LAA DTFR+AA +QL +WA+R  A  +  + G+D AA+ Y A 
Sbjct: 118 TIGKLACRFAREGKRVILAAADTFRAAAGEQLAVWAERAGAGLIRHQAGADPAAVVYAAI 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+ ++ DV+++DTAGRL   + LM  + K+ RV++R  P +PH VL VLDATTGQNAL
Sbjct: 178 QSARNRRADVVLVDTAGRLQTKTNLMEELKKIRRVMERELPGSPHEVLLVLDATTGQNAL 237

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F    G TG+ +TK+DGTA+GG ++ I     IPV  +G+GEG +DL+ F  +DF
Sbjct: 238 SQARLFSEAVGVTGIALTKLDGTAKGGVILGIAAEMGIPVKLVGLGEGPDDLKEFQPRDF 297

Query: 307 SAVI 310
           +A +
Sbjct: 298 AAAL 301


>gi|264680036|ref|YP_003279945.1| signal recognition particle-docking protein [Comamonas testosteroni
           CNB-2]
 gi|262210551|gb|ACY34649.1| signal recognition particle-docking protein [Comamonas testosteroni
           CNB-2]
          Length = 385

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/302 (42%), Positives = 184/302 (60%), Gaps = 11/302 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +W+ +L  G   T       I  + +  ++DD + EELED L+ +D GV   Q ++E+L 
Sbjct: 90  NWMERLKAGLRKTG----SSIATVFTGTQIDDRLYEELEDALLMADTGVKATQHLLEDL- 144

Query: 72  TKRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            KR  K+        V   +++ +  +L PL KP      H P VI+V GVNG GKTT I
Sbjct: 145 -KRRVKETKTTEPAAVKALLADALTDLLRPLEKPLTIG-EHTPTVIMVAGVNGAGKTTSI 202

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K ++D    V+LAA DTFR+AA +QL +WA+R + + + S+ G D AA++++A   
Sbjct: 203 GKLTKHLADGEQSVLLAAADTFRAAAREQLGVWANRNTVEII-SQDGGDPAAVSFDAVSA 261

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+K DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL Q
Sbjct: 262 GKARKKDVVLVDTAGRLPTQLHLMEELKKIKRVVSKADGTAPHEVLLVIDGNTGQNALTQ 321

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V  F      TGLI+TK+DGTA+GG L  I     +PVYF+GVGE I DLE F A++F+ 
Sbjct: 322 VRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKIEDLETFSAREFAQ 381

Query: 309 VI 310
            +
Sbjct: 382 AL 383


>gi|220928147|ref|YP_002505056.1| signal recognition particle-docking protein FtsY [Clostridium
           cellulolyticum H10]
 gi|219998475|gb|ACL75076.1| signal recognition particle-docking protein FtsY [Clostridium
           cellulolyticum H10]
          Length = 302

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 189/301 (62%), Gaps = 10/301 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL +G   T   + E I  + +S  ++D+ + EELE++LI SDIG+    +++E+
Sbjct: 1   MGFFDKLKEGLQKTRKSITEKIDQVLVSFGKVDEELFEELEEILITSDIGIDTTMRVIED 60

Query: 70  LLTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPFNWDFS--HRPHVILVVGVNGVGKT 125
           L  K     V  ++++   DV  L+ + L  + +    +     +P VI+V+GVNGVGKT
Sbjct: 61  LKEK-----VKERKIIDPKDVKGLLKESLKEILEKGGSEMKIGTKPSVIIVIGVNGVGKT 115

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGK++    + G KV+LAAGDTFR+AAIDQL++WA R   D +  + GSD AA+ ++A
Sbjct: 116 TSIGKIANLYKNQGKKVLLAAGDTFRAAAIDQLEVWAQRVGTDIIMHKEGSDPAAVIFDA 175

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+++  D+LI DTAGRLH    LM  + K+ RVL R  P A    L VLDATTGQNA
Sbjct: 176 VQAAKSRNADLLICDTAGRLHTKKNLMEELKKISRVLDRELPGADRETLLVLDATTGQNA 235

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F   +  TG+++TK+DGTA+GG +I I     IPV  +GVGE ++DL+ F A++
Sbjct: 236 ISQAKTFSETSDITGIVLTKLDGTAKGGIVIAIKSELDIPVKLIGVGEQLDDLQKFDAEE 295

Query: 306 F 306
           F
Sbjct: 296 F 296


>gi|212704579|ref|ZP_03312707.1| hypothetical protein DESPIG_02641 [Desulfovibrio piger ATCC 29098]
 gi|212671978|gb|EEB32461.1| hypothetical protein DESPIG_02641 [Desulfovibrio piger ATCC 29098]
          Length = 876

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 188/304 (61%), Gaps = 5/304 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K+++G + T  +    +  + SS   L++   EELE+L I +D+G   + ++VE L  + 
Sbjct: 575 KISEGLSRTREQFSRRLDSLFSSHGELNESFWEELEELFIMADLGYEPSLELVERL--RE 632

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            A+  +V RV  DV  L+   +  + + P      + P V+L +GVNGVGKTT I KL+ 
Sbjct: 633 RARKENVTRV-EDVRGLLMAEVDEIFRLPRRISAVNPPEVVLFIGVNGVGKTTTIAKLAH 691

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +    G KVM+AA DTFR+AAI+QL++WA+R  A F     GSD A++AYEA  +A A+K
Sbjct: 692 RARMQGKKVMIAAADTFRAAAIEQLQVWAERVGALFHARPAGSDPASVAYEAMDRALAEK 751

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           VD+L +DTAGRL     LM  + K+ +VL +    APH  + V+DATTGQNAL Q ++F 
Sbjct: 752 VDILFVDTAGRLQTKVNLMEELTKIRQVLGKKHEGAPHRCILVIDATTGQNALSQAKLFK 811

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             AG   LI+TK+DGTA+GG  I + +  K+P+ ++G+GE + DL PF   D++  + G 
Sbjct: 812 EAAGVDELILTKLDGTAKGGVAIAVAMQEKLPITYVGLGEKLEDLRPFNGADYARALLGD 871

Query: 314 LDYG 317
           LD G
Sbjct: 872 LDQG 875


>gi|255029040|ref|ZP_05300991.1| hypothetical protein LmonL_07576 [Listeria monocytogenes LO28]
          Length = 289

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/262 (44%), Positives = 166/262 (63%), Gaps = 11/262 (4%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           +LI +D+G     ++V+ L  +   +++S  +   DV E+I + L+ + +    +     
Sbjct: 19  ILIGADVGFETVMELVDTLRREVQLRNISDPK---DVQEVIVEKLVEIYQGDEKE-DEAL 74

Query: 112 H-------VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           H       VIL VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AIDQL++W +R
Sbjct: 75  HIEEDGLTVILFVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGER 134

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
           T  D +    GSD AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R
Sbjct: 135 TGVDVIKQAEGSDPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITR 194

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
             P+APH VL VLDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     I
Sbjct: 195 EIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDI 254

Query: 285 PVYFLGVGEGINDLEPFVAKDF 306
           PV F+G+GE ++DL+ F A ++
Sbjct: 255 PVKFVGLGEQMDDLQAFDANEY 276


>gi|294791675|ref|ZP_06756823.1| signal recognition particle-docking protein FtsY [Veillonella sp.
           6_1_27]
 gi|294456905|gb|EFG25267.1| signal recognition particle-docking protein FtsY [Veillonella sp.
           6_1_27]
          Length = 311

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 178/302 (58%), Gaps = 9/302 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           +  +  ++  G   T     + +  I I   ++DD   ++LE +++ SD+G    + +++
Sbjct: 2   AFGFFDRIKDGLEKTRKSFVKNVESIVIGYAQIDDDFLDDLEAVMLTSDLGPKTTEYLMK 61

Query: 69  ELLTKRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           E+  +R   +  +     V+  + + I +ML+           H P VILVVGVNGVGKT
Sbjct: 62  EI--RRGVTEGIINHTGDVMPFMEDRITEMLIDQEDEITL---HHPEVILVVGVNGVGKT 116

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T I KL+   +  G KV++ AGDTFR+AA DQL IWADR     V  + G+D AA+ Y+A
Sbjct: 117 TTIAKLANYYTKEGKKVIIVAGDTFRAAAADQLSIWADRVGVPIVKHKEGADPAAVVYDA 176

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+  D++I+DTAGRLH    LM  + KM RV       APH  L VLD TTGQNA
Sbjct: 177 MEAAKARNADLVIVDTAGRLHTKVNLMEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNA 236

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q ++F       G+++TK+DGTA+GG +I I     +PV ++GVGEG++DL PF AK+
Sbjct: 237 VSQAKLFGQAVPVNGIVVTKLDGTAKGGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKE 296

Query: 306 FS 307
           F+
Sbjct: 297 FA 298


>gi|89890440|ref|ZP_01201950.1| cell division protein, signal recognition particle (docking
           protein) FtsY [Flavobacteria bacterium BBFL7]
 gi|89517355|gb|EAS20012.1| cell division protein, signal recognition particle (docking
           protein) FtsY [Flavobacteria bacterium BBFL7]
          Length = 317

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/297 (42%), Positives = 190/297 (63%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T     + +   ++ + ++D  V ++LED+LI SD+GVA   K+++ +   R 
Sbjct: 16  LDKGLEKTKTTFFDKLGKAVAGKSKVDADVLDDLEDVLISSDVGVATTIKVIDRI-EDRV 74

Query: 76  AKD-----VSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           AKD       +  +L D ++ L+ ++    +  F       P+V++VVGVNGVGKTT IG
Sbjct: 75  AKDKYLGTTELNGILRDEIAGLLSEVNNGDATDFTIPKQEGPYVVMVVGVNGVGKTTTIG 134

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    GLKV+L AGDTFR+AA+DQL+IWADR   + V  ++GSD A++A++  + A
Sbjct: 135 KLAHQFKQKGLKVVLGAGDTFRAAAVDQLQIWADRVGVEIVKQDMGSDPASVAFDTLQSA 194

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+  DV+++DTAGRLHN   LM  + K+ RV++++ P APH V+ VLD +TGQNA  Q 
Sbjct: 195 VAQNADVVLLDTAGRLHNKVNLMNELTKVKRVMQKIIPDAPHDVMLVLDGSTGQNAFEQA 254

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F A    + L +TK+DGTA+GG +I I    +IPV ++GVGEG++DL+ F   +F
Sbjct: 255 KQFTAATEVSSLAVTKLDGTAKGGVVIGISDQFQIPVRYIGVGEGMDDLQVFNKTEF 311


>gi|307150109|ref|YP_003885493.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 7822]
 gi|306980337|gb|ADN12218.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 7822]
          Length = 481

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/318 (34%), Positives = 186/318 (58%), Gaps = 12/318 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + V  E ++W+++L +G   T   L   +  I+    L+     E+E LL+++D+G+   
Sbjct: 167 EDVTEEEINWLKRLREGLGKTRRSLVNQLKAIVGQGPLNQDAVTEIEALLLQADVGIEAT 226

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHRP-----HVILV 116
             I+E L  K   + +  ++ +  + E+I ++L    +PF    D +  P     ++ L+
Sbjct: 227 DYIIEALQEKLREESLPPEQAIEYLKEIIREIL---DRPFKHFEDTAFEPEKDVLNIWLL 283

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IG 175
            GVNG GKTT IGKL+   + +G   ++ A DTFR+AA++Q+KIW +R+  + + +    
Sbjct: 284 TGVNGAGKTTTIGKLAHMANKSGYSCLIVAADTFRAAAVEQVKIWGERSGTEVIANPGKN 343

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D AA+ ++    AQ++ V++L++DTAGRL N   LM  + K+ R++ +  P A    L 
Sbjct: 344 TDPAAVVFDGINAAQSRNVNLLLVDTAGRLQNKKNLMDELAKIRRIIDKKAPKAKVESLL 403

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDAT GQN LRQ ++F   A  +G+++TK+DGTA+GG  + +     +P+ F+G GEGI
Sbjct: 404 VLDATLGQNGLRQAQVFSEAAKLSGVVLTKLDGTAKGGVALAVAQQLDLPIRFIGAGEGI 463

Query: 296 NDLEPFVAKDF-SAVITG 312
            DL PF + +F  A++ G
Sbjct: 464 EDLRPFSSYEFVEALLNG 481


>gi|163858287|ref|YP_001632585.1| signal recognition particle receptor GTPase [Bordetella petrii DSM
           12804]
 gi|163262015|emb|CAP44317.1| signal recognition particle receptor GTPase [Bordetella petrii]
          Length = 321

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 180/304 (59%), Gaps = 11/304 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L +G + T     + +  +    ++D+ + EELE  LI +D G+   ++++  L 
Sbjct: 21  SWLGRLKQGLSRTG----QSLGGLFVGVKVDENLFEELESALIMADAGLEATEQLLTALR 76

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + R  +  +  +V   + +++   L PL + F+   +  P V+++ GVNG GKTT IGK
Sbjct: 77  ARVRKERIENPAQVKQALRQVLADHLRPLERQFDLRRAS-PLVVMIAGVNGAGKTTSIGK 135

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G  V+LAAGD FR+AA +QL  W  R +   +  E G D AA+A++A    +
Sbjct: 136 LAHTFQRQGASVLLAAGDIFRAAAREQLIEWGSRNNVSVIAQE-GGDPAAVAFDAVNAGR 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+   V+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL Q+ 
Sbjct: 195 ARGAGVVMVDTAGRLPTQLHLMEELKKIRRVIGKADGAAPHEVLLVVDGNTGQNALAQIR 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAKDF 306
            F A  G TGL++TK+DGTA+GG L  +    +    +PVY++GVGEG+ DL+PFVA +F
Sbjct: 255 AFDAAIGLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGMEDLQPFVADEF 314

Query: 307 SAVI 310
           +  +
Sbjct: 315 AGAL 318


>gi|125624534|ref|YP_001033017.1| signal recognition particle-docking protein [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|124493342|emb|CAL98316.1| signal recognition particle-docking protein [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071328|gb|ADJ60728.1| signal recognition particle-docking protein [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 459

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/293 (42%), Positives = 184/293 (62%), Gaps = 9/293 (3%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +K  +    T     +G  ++ ++ R +D+   EELE+ LI SD+GV +A ++ EEL  +
Sbjct: 156 KKYEQSLTLTRKTFSDGFNELFANFRTVDEEFFEELEETLIMSDVGVDLAMEVTEEL--R 213

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDF-SHRPHVILVVGVNGVGKTTVI 128
           + AK V+ +    D+ +LI + ++        P   D  S    V L VGVNGVGKTT I
Sbjct: 214 KEAKLVNAKST-DDLRQLIIEKIVDKFDGEKLPTKLDIQSDGLSVFLFVGVNGVGKTTTI 272

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +  + G KV+LAA DTFR+ AIDQL  W +R+  + V    GSD AA+ ++A  +
Sbjct: 273 GKLAARYKNEGKKVLLAAADTFRAGAIDQLVEWGNRSGVEVVTKPAGSDPAAVVFDALAK 332

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+  D+L++DTAGRL N   LM  + K+ +V+KR  P APH  +  LDATTGQNA++Q
Sbjct: 333 AKAENYDILLVDTAGRLQNKDNLMKELEKIGKVIKREIPDAPHETILALDATTGQNAIQQ 392

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + F AV   TG+ +TK+DG+A+GG ++ IV + KIPV  +G+GE +NDL+ F
Sbjct: 393 AKEFSAVTPITGIALTKLDGSAKGGIVLSIVQSLKIPVKLIGLGEKLNDLQDF 445


>gi|319744740|gb|EFV97082.1| cell division protein FtsY [Streptococcus agalactiae ATCC 13813]
          Length = 536

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/307 (41%), Positives = 184/307 (59%), Gaps = 11/307 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K  S+   + R L K     S +L   +++    RR+D+   EELE++LI SD+GV VA 
Sbjct: 227 KAESQEEKYNRSLKKTRTGFSARLNAFLSNF---RRVDEEFFEELEEMLILSDVGVNVAT 283

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGV 119
           ++ E+L   RY   +   +   D+  +I + L+ + +    +N   +F     V+L VGV
Sbjct: 284 QLTEDL---RYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V  E  +D A
Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEEKADPA 400

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA
Sbjct: 401 SVVFDGMEKAVAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+ 
Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIG 520

Query: 300 PFVAKDF 306
            F ++DF
Sbjct: 521 EFNSEDF 527


>gi|15672795|ref|NP_266969.1| hypothetical protein L0206 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723735|gb|AAK04911.1|AE006314_9 cell division protein FtsY [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406364|gb|ADZ63435.1| signal recognition particle docking protein FtsY [Lactococcus
           lactis subsp. lactis CV56]
          Length = 459

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/293 (42%), Positives = 184/293 (62%), Gaps = 9/293 (3%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +K  +    T     +G  ++ ++ R +D+   EELE+ LI SD+GV +A ++ EEL  +
Sbjct: 156 KKYEQSLTLTRKTFSDGFNELFANFRTVDEEFFEELEETLIMSDVGVDLAMEVTEEL--R 213

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDF-SHRPHVILVVGVNGVGKTTVI 128
           + AK V+ +    D+ +LI + ++        P   D  S    V L VGVNGVGKTT I
Sbjct: 214 KEAKLVNAKST-DDLRQLIIEKIVDKFDGEKLPTKLDIQSDGLSVFLFVGVNGVGKTTTI 272

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +  + G KV+LAA DTFR+ AIDQL  W +R+  + V    GSD AA+ ++A  +
Sbjct: 273 GKLAARYKNEGKKVLLAAADTFRAGAIDQLVEWGNRSGVEVVTKPAGSDPAAVVFDALAK 332

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+  D+L++DTAGRL N   LM  + K+ +V+KR  P APH  +  LDATTGQNA++Q
Sbjct: 333 AKAENYDILLVDTAGRLQNKDNLMKELEKIGKVIKREIPDAPHETILALDATTGQNAIQQ 392

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + F AV   TG+ +TK+DG+A+GG ++ IV + KIPV  +G+GE +NDL+ F
Sbjct: 393 AKEFSAVTPITGIALTKLDGSAKGGIVLSIVQSLKIPVKLIGLGEKLNDLQDF 445


>gi|77409117|ref|ZP_00785832.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae COH1]
 gi|16588994|gb|AAL26980.1|AF380672_4 putative signal recognition particle [Streptococcus agalactiae]
 gi|33439457|gb|AAO49795.1| putative signal particle [Streptococcus agalactiae serogroup III]
 gi|77172295|gb|EAO75449.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae COH1]
          Length = 536

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/307 (41%), Positives = 184/307 (59%), Gaps = 11/307 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K  S+   + R L K     S +L   +++    RR+D+   EELE++LI SD+GV VA 
Sbjct: 227 KAESQEEKYNRSLKKTRTGFSARLNAFLSNF---RRVDEEFFEELEEMLILSDVGVNVAT 283

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGV 119
           ++ E+L   RY   +   +   D+  +I + L+ + +    +N   +F     V+L VGV
Sbjct: 284 QLTEDL---RYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V  E  +D A
Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEKKADPA 400

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA
Sbjct: 401 SVVFDGMEKAVAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+ 
Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIG 520

Query: 300 PFVAKDF 306
            F ++DF
Sbjct: 521 EFNSEDF 527


>gi|22536891|ref|NP_687742.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae 2603V/R]
 gi|25010804|ref|NP_735199.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae NEM316]
 gi|76798202|ref|ZP_00780453.1| cell division protein FtsY [Streptococcus agalactiae 18RS21]
 gi|77406417|ref|ZP_00783476.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae H36B]
 gi|77410752|ref|ZP_00787110.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae CJB111]
 gi|22533741|gb|AAM99614.1|AE014224_17 signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae 2603V/R]
 gi|23095158|emb|CAD46393.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586465|gb|EAO62972.1| cell division protein FtsY [Streptococcus agalactiae 18RS21]
 gi|77163131|gb|EAO74084.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae CJB111]
 gi|77174981|gb|EAO77791.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae H36B]
          Length = 536

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/307 (41%), Positives = 184/307 (59%), Gaps = 11/307 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K  S+   + R L K     S +L   +++    RR+D+   EELE++LI SD+GV VA 
Sbjct: 227 KAESQEEKYNRSLKKTRTGFSARLNAFLSNF---RRVDEEFFEELEEMLILSDVGVNVAT 283

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGV 119
           ++ E+L   RY   +   +   D+  +I + L+ + +    +N   +F     V+L VGV
Sbjct: 284 QLTEDL---RYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V  E  +D A
Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEEKADPA 400

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA
Sbjct: 401 SVVFDGMEKAVAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+ 
Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIG 520

Query: 300 PFVAKDF 306
            F ++DF
Sbjct: 521 EFNSEDF 527


>gi|303256295|ref|ZP_07342311.1| signal recognition particle-docking protein FtsY [Burkholderiales
           bacterium 1_1_47]
 gi|330998992|ref|ZP_08322717.1| signal recognition particle-docking protein FtsY [Parasutterella
           excrementihominis YIT 11859]
 gi|302861024|gb|EFL84099.1| signal recognition particle-docking protein FtsY [Burkholderiales
           bacterium 1_1_47]
 gi|329575734|gb|EGG57260.1| signal recognition particle-docking protein FtsY [Parasutterella
           excrementihominis YIT 11859]
          Length = 315

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 188/315 (59%), Gaps = 9/315 (2%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E   W  +L +G   T + L      I +   +D+   E+LE  +I +DIGV  +  I+E
Sbjct: 6   EKTGWFARLKQGLRKTQVNL----VGIFTGGVVDEAFLEDLEFQMISADIGVETSALILE 61

Query: 69  ELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +   K +  Q  V   + E+I  +L P     N+D  H+P VI++ GVNG GKTT 
Sbjct: 62  RLRERIKLKGLKTQDEVKVALKEIIADILRPCEASLNFD-EHKPLVIMMCGVNGAGKTTT 120

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K  +    KV+LAA DTFR+AA +QL +W DR   + +  E G D A++AY+A  
Sbjct: 121 IGKLAKHFAQLNKKVLLAAADTFRAAAKEQLAVWGDRNQIEVISQEKG-DPASVAYDAIS 179

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             + K +D++++DTAGRL   + LM  + ++ +V  +    APH V+ VLD T GQNAL 
Sbjct: 180 SGRKKGMDIVMVDTAGRLPTQTNLMNELARIRKVQGKAMEGAPHEVILVLDGTNGQNALM 239

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVAKD 305
           Q + F   AG TGLI+TK+DGTA+GG L+ +  + +  +P+Y++GVGE I+DL+PF A +
Sbjct: 240 QAKAFDEAAGLTGLIITKLDGTAKGGVLVALANSREKPLPIYYIGVGETIDDLQPFKADE 299

Query: 306 FSAVITGCLDYGEEK 320
           F+A + G    G +K
Sbjct: 300 FAAALVGLDQIGGKK 314


>gi|157692275|ref|YP_001486737.1| signal recognition particle-docking protein [Bacillus pumilus
           SAFR-032]
 gi|157681033|gb|ABV62177.1| signal recognition particle-docking protein [Bacillus pumilus
           SAFR-032]
          Length = 328

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/321 (40%), Positives = 192/321 (59%), Gaps = 31/321 (9%)

Query: 11  LSWIRKLTKGFA----STSLKLKEG-----------ITDIISS-RRLDDGVREELEDLLI 54
           +S+ +KL + F     S S K K+G           + ++IS  R++D+   EELE++LI
Sbjct: 1   MSFFKKLKEKFTQQTDSVSEKFKDGLEKTRNSFQGRVNELISRYRKVDEDFFEELEEVLI 60

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----- 109
            +D+G     ++++EL      K+V + R + D SE+   +   L + +N          
Sbjct: 61  GADVGFTTVMEMIDEL-----KKEVKL-RNIQDPSEVQSVISEKLVEIYNSGEEQISALN 114

Query: 110 ----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               R ++IL VGVNGVGKTT IGKL+ K+ + G  V+LAAGDTFR+ AI+QL++W +R+
Sbjct: 115 IEDGRLNIILFVGVNGVGKTTTIGKLANKLKNEGKSVILAAGDTFRAGAIEQLEVWGERS 174

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               V    GSD AA+ Y+A + A+AK  DVLI DTAGRL N   LM  + K+ RV++R 
Sbjct: 175 GVPVVKQTAGSDPAAVIYDAVQSAKAKNADVLICDTAGRLQNKVNLMKELEKVKRVIERE 234

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P APH VL  LDATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I     IP
Sbjct: 235 VPDAPHEVLLALDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELNIP 294

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           V  +G+GE ++DL+ F A+ +
Sbjct: 295 VKLVGLGEKVDDLQEFDAESY 315


>gi|227515696|ref|ZP_03945745.1| signal recognition particle receptor [Lactobacillus fermentum ATCC
           14931]
 gi|227085944|gb|EEI21256.1| signal recognition particle receptor [Lactobacillus fermentum ATCC
           14931]
          Length = 526

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 113/266 (42%), Positives = 162/266 (60%), Gaps = 18/266 (6%)

Query: 52  LLIRSDIGVAVAQKIVEELLTK------RYAKDVS---VQRV--LYDVSELIHKMLMPLS 100
           +LI SD+G  +A K+ + L  +      +  +DVS   ++++  LYD +    +  + ++
Sbjct: 256 MLIESDVGYEMAMKLSDSLREEVRLQNAKNKQDVSNVIIEKMVDLYDEAGAGEQTTLTMA 315

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                     P VI+ VGVNG GKTT IGK++ +    G +V+LAA DTFR+ A +QL++
Sbjct: 316 -------DQGPTVIMFVGVNGAGKTTTIGKMAARFKGQGKRVLLAAADTFRAGATEQLEV 368

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           WA R   D V     SD AA+ ++A  +A+    DVL +DTAGRL N   LM  + KM R
Sbjct: 369 WAQRDGVDIVTGPENSDPAAVVFDAVTKAKKDNYDVLFVDTAGRLQNKVNLMNELAKMKR 428

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           +L R  P APH VL VLDATTGQNAL Q ++F      TG+++TK+DGTARGG ++ I  
Sbjct: 429 ILTREIPDAPHEVLLVLDATTGQNALTQAKLFKETTDVTGIVLTKLDGTARGGIVLAIRN 488

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDF 306
              +PV F+G+GE ++DLE F A+DF
Sbjct: 489 ELHLPVKFVGLGEKVSDLEEFNAQDF 514


>gi|145590107|ref|YP_001156704.1| signal recognition particle-docking protein FtsY [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048513|gb|ABP35140.1| signal recognition particle-docking protein FtsY [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 296

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 123/290 (42%), Positives = 172/290 (59%), Gaps = 10/290 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL----TKRYAKDVSVQR 83
           L++ +  +  + + D+   + LE+ LI+SD+G+   ++++ +L     +++ +    +Q 
Sbjct: 4   LRKTLGSLFKTSKTDEAWFDTLEESLIQSDVGLPTTEQLIIKLRKAAKSEKASSPEELQA 63

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           +L      +   L P   P   D   H P V LVVGVNG GKTT IGKL K     G  V
Sbjct: 64  LLIQEVSTLLGSLEPNPNPLFTDQKIHIPEVWLVVGVNGAGKTTTIGKLCKLFQSQGKSV 123

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +LAAGDTFR+AA +QL+ W  R   D V ++ G DAAA+A++A   A ++K D+LIIDTA
Sbjct: 124 LLAAGDTFRAAARNQLQEWGGRNQVD-VITQDGGDAAAVAHDAIHAANSRKSDILIIDTA 182

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL     LM  + K+ RV+ +  P APH  L VLD  TGQN L QV+ FHA  G TGLI
Sbjct: 183 GRLATQDHLMEELKKVKRVIGKALPGAPHHTLLVLDGNTGQNGLSQVKAFHAALGLTGLI 242

Query: 263 MTKMDGTARGGGLIPIVVT----HKIPVYFLGVGEGINDLEPFVAKDFSA 308
           +TK+DGTA+GG +  +  T     K  V  LG GEGI+DL PF A  +S+
Sbjct: 243 VTKLDGTAKGGVICALAHTLKDEPKPAVLALGKGEGIDDLVPFTAHQYSS 292


>gi|77413067|ref|ZP_00789268.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae 515]
 gi|77160860|gb|EAO71970.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae 515]
          Length = 536

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/307 (41%), Positives = 184/307 (59%), Gaps = 11/307 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K  S+   + R L K     S +L   +++    RR+D+   EELE++LI SD+GV VA 
Sbjct: 227 KAESQEEKYNRSLKKTRTGFSARLNAFLSNF---RRVDEEFFEELEEMLILSDVGVNVAT 283

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGV 119
           ++ E+L   RY   +   +   D+  +I + L+ + +    +N   +F     V+L VGV
Sbjct: 284 QLTEDL---RYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V  E  +D A
Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEEKADPA 400

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA
Sbjct: 401 SVVFDGMEKAIAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+ 
Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIG 520

Query: 300 PFVAKDF 306
            F ++DF
Sbjct: 521 EFNSEDF 527


>gi|184155712|ref|YP_001844052.1| signal recognition particle receptor [Lactobacillus fermentum IFO
           3956]
 gi|183227056|dbj|BAG27572.1| signal recognition particle receptor [Lactobacillus fermentum IFO
           3956]
          Length = 509

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 113/266 (42%), Positives = 162/266 (60%), Gaps = 18/266 (6%)

Query: 52  LLIRSDIGVAVAQKIVEELLTK------RYAKDVS---VQRV--LYDVSELIHKMLMPLS 100
           +LI SD+G  +A K+ + L  +      +  +DVS   ++++  LYD +    +  + ++
Sbjct: 239 MLIESDVGYEMAMKLSDSLREEVRLQNAKNKQDVSNVIIEKMVNLYDEAGAGEQTTLTMA 298

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                     P VI+ VGVNG GKTT IGK++ +    G +V+LAA DTFR+ A +QL++
Sbjct: 299 -------DQGPTVIMFVGVNGAGKTTTIGKMAARFKGQGKRVLLAAADTFRAGATEQLEV 351

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           WA R   D V     SD AA+ ++A  +A+    DVL +DTAGRL N   LM  + KM R
Sbjct: 352 WAQRDGVDIVTGPENSDPAAVVFDAVTKAKKDNYDVLFVDTAGRLQNKVNLMNELAKMKR 411

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           +L R  P APH VL VLDATTGQNAL Q ++F      TG+++TK+DGTARGG ++ I  
Sbjct: 412 ILTREIPDAPHEVLLVLDATTGQNALTQAKLFKETTDVTGIVLTKLDGTARGGIVLAIRN 471

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDF 306
              +PV F+G+GE ++DLE F A+DF
Sbjct: 472 ELHLPVKFVGLGEKVSDLEEFNAQDF 497


>gi|281491307|ref|YP_003353287.1| signal recognition particle docking protein FtsY [Lactococcus
           lactis subsp. lactis KF147]
 gi|281375048|gb|ADA64566.1| Signal recognition particle docking protein FtsY [Lactococcus
           lactis subsp. lactis KF147]
          Length = 459

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 123/298 (41%), Positives = 184/298 (61%), Gaps = 19/298 (6%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +K  +    T     +G  ++ ++ R +D+   EELE+ LI SD+GV +A ++ EEL  +
Sbjct: 156 KKYEQSLTLTRKTFSDGFNELFANFRTVDEEFFEELEETLIMSDVGVDLAMEVTEEL--R 213

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP----------HVILVVGVNGVG 123
           + AK V+ +    D+ +LI + ++       +D    P           V L VGVNGVG
Sbjct: 214 KEAKLVNAKST-DDLRQLIIEKIVD-----KFDGEKLPTKLDIQTDGLSVFLFVGVNGVG 267

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ +  + G KV+LAA DTFR+ AIDQL  W +R+  + V    GSD AA+ +
Sbjct: 268 KTTTIGKLAARYKNEGKKVLLAAADTFRAGAIDQLVEWGNRSGVEVVTKPAGSDPAAVVF 327

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A  +A+A+  D+L++DTAGRL N   LM  + K+ +V+KR  P APH  +  LDATTGQ
Sbjct: 328 DALAKAKAENYDILLVDTAGRLQNKDNLMKELEKIGKVIKREIPDAPHETILALDATTGQ 387

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           NA++Q + F AV   TG+ +TK+DG+A+GG ++ IV + KIPV  +G+GE +NDL+ F
Sbjct: 388 NAIQQAKEFSAVTPITGIALTKLDGSAKGGIVLSIVQSLKIPVKLIGLGEKLNDLQDF 445


>gi|225870866|ref|YP_002746813.1| cell division protein FtsY [Streptococcus equi subsp. equi 4047]
 gi|225700270|emb|CAW94513.1| putative cell division protein FtsY [Streptococcus equi subsp. equi
           4047]
          Length = 485

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 123/304 (40%), Positives = 177/304 (58%), Gaps = 11/304 (3%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           S+   + R L K     S +L     +    RR+D+   E+LE+LLI SD+GV VA  + 
Sbjct: 179 SDQEKYKRSLKKTRTGFSARLNSFFANF---RRVDEDFFEDLEELLILSDVGVHVATTLT 235

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK---PFNWDFSHRP--HVILVVGVNGV 122
           EEL   RY   +   +    +  LI   L+ + +    +N    ++P   V+L VGVNGV
Sbjct: 236 EEL---RYEAKLENAKKPEALKRLIIDKLVAIYEGDGRYNEAIHYQPGLTVMLFVGVNGV 292

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ 
Sbjct: 293 GKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVV 352

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++  ++A A++ D+L+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TG
Sbjct: 353 FDGVERAVAERADILLIDTAGRLQNKDNLMAELEKIGRIIKRVIPDAPHETLLALDASTG 412

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV  +G GE I+D+  F 
Sbjct: 413 QNALSQAKEFSKITPLTGLILTKIDGTAKGGIVLAIRQELDIPVKLIGFGEAIDDIGEFH 472

Query: 303 AKDF 306
           ++DF
Sbjct: 473 SEDF 476


>gi|260437029|ref|ZP_05790845.1| signal recognition particle-docking protein FtsY [Butyrivibrio
           crossotus DSM 2876]
 gi|292810338|gb|EFF69543.1| signal recognition particle-docking protein FtsY [Butyrivibrio
           crossotus DSM 2876]
          Length = 311

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 4/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + + +KL  G + T   +  G+  I     ++D+   EELE+ LI  DIGV   +KI++ 
Sbjct: 1   MGFFKKLVSGLSKTRNNIVSGLNSIFHGFSKIDEDFYEELEETLIMGDIGVETTEKIIDG 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVI 128
           L  K     +   ++  D+  LI  +   +    N ++F +R  VILV+GVNGVGKTT I
Sbjct: 61  LRQKVREDKIKDPQLCKDI--LIDSIKEQMDLGENAYEFENRRSVILVIGVNGVGKTTSI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++  +   G KV+LAA DTFR+AAI+QL+ WA R S D +    GSD  A+ ++A + 
Sbjct: 119 GKIAAGLKKQGKKVILAAADTFRAAAIEQLEEWAKRASVDIIAQNEGSDPGAVVFDALQA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+++  DVLI DTAGRLHN   LM  + K+ +++ R  P A    L VLD TTGQNAL Q
Sbjct: 179 AKSRNADVLICDTAGRLHNKKNLMDELRKIDKIITREFPDAYRENLIVLDGTTGQNALSQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++ F  V   +G+I+TKMDGTA+GG  + I   + IPV ++GVGE I DL+ F + +F
Sbjct: 239 LKEFKDVCDVSGIILTKMDGTAKGGIAVAIQSEYNIPVKYIGVGEQIEDLQKFDSDEF 296


>gi|295091755|emb|CBK77862.1| signal recognition particle-docking protein FtsY [Clostridium cf.
           saccharolyticum K10]
          Length = 311

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/301 (43%), Positives = 183/301 (60%), Gaps = 14/301 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G   T   +  GI  I S    +DD   EE+E+ LI  D+G+     I+E+L 
Sbjct: 8   FFGRLVEGLTKTRNSIVAGIDTIFSGFSAIDDDFYEEIEETLIMGDLGIQTTMAIMEDLR 67

Query: 72  TK---RYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            K   R+ K+ S      D  EL+ + +   M L +   ++F +R  V+LV+GVNGVGKT
Sbjct: 68  AKVKERHIKEPS------DCKELLIESIRSQMDLGEN-AYEFENRKSVVLVIGVNGVGKT 120

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL+ ++   G KV+LAA DTFR+AAI+QL  WA+R   D +  + GSD AA+ Y+A
Sbjct: 121 TSVGKLAGQLKGQGKKVILAAADTFRAAAIEQLTEWANRAGVDLIAQQEGSDPAAVIYDA 180

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+++  DVLI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQNA
Sbjct: 181 IAAAKSRHADVLICDTAGRLHNKKNLMEELKKINRIIDKEFPEAYRETLVVLDGTTGQNA 240

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q + F  VA  TG+I+TK+DGTA+GG  + I     IPV ++G+GE I+DL+ F A D
Sbjct: 241 LSQAKQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYVGIGEKIDDLQKFNAND 300

Query: 306 F 306
           F
Sbjct: 301 F 301


>gi|327470655|gb|EGF16111.1| cell division protein FtsY [Streptococcus sanguinis SK330]
          Length = 512

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108
           I SD+GV VA  + EEL   RY   +   +    + +LI + L+ + +    FN   +F 
Sbjct: 249 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 305

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R    
Sbjct: 306 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 365

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     SD A++ Y+  ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP 
Sbjct: 366 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 425

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  
Sbjct: 426 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 485

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D+  F +++F
Sbjct: 486 IGFGEKIDDIGEFNSENF 503


>gi|291459097|ref|ZP_06598487.1| signal recognition particle-docking protein FtsY [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418351|gb|EFE92070.1| signal recognition particle-docking protein FtsY [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 291

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/278 (41%), Positives = 164/278 (58%), Gaps = 6/278 (2%)

Query: 32  ITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           + +I SS  + DD   EELED +I SD+G   A +I++ +  +   K  ++ +   DV +
Sbjct: 9   LNNIFSSSEVADDSFYEELEDAMIMSDVGADAALRIIDAVRREAKRKGCNLTK---DVRK 65

Query: 91  LIHKMLMPLSKPFN--WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++   L  L +     ++F  +  +I V+GVNGVGKTT IGKL++     G KV+LAA D
Sbjct: 66  ILKDYLYELMRTDESYYEFERQKSIISVIGVNGVGKTTSIGKLAEHFKSMGKKVILAAAD 125

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+ AI+QL  W  R   D +    GSD AA+ ++A +  +AK  D+LIIDTAGRLHN 
Sbjct: 126 TFRAGAIEQLVEWGKRVGVDVIRQREGSDPAAVVFDALQSFKAKNADILIIDTAGRLHNK 185

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  +GK+ R++ R         L VLDATTGQNAL Q  +F   +  TG+I+TKMDG
Sbjct: 186 KNLMQELGKINRIIDREFSEGFRETLVVLDATTGQNALSQARVFQETSQVTGIILTKMDG 245

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +ARGG  + +     IPV ++G GE   DL  F A  +
Sbjct: 246 SARGGVALSVQSELGIPVKYIGSGERAKDLHRFDAGSY 283


>gi|194014405|ref|ZP_03053022.1| signal recognition particle-docking protein FtsY [Bacillus pumilus
           ATCC 7061]
 gi|194013431|gb|EDW22996.1| signal recognition particle-docking protein FtsY [Bacillus pumilus
           ATCC 7061]
          Length = 328

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 131/321 (40%), Positives = 192/321 (59%), Gaps = 31/321 (9%)

Query: 11  LSWIRKLTKGFA----STSLKLKEG-----------ITDIISS-RRLDDGVREELEDLLI 54
           +S+ +KL + F     S S K K+G           + ++IS  R++D+   EELE++LI
Sbjct: 1   MSFFKKLKEKFTQQTDSVSEKFKDGLEKTRNSFQGRVNELISRYRKVDEDFFEELEEVLI 60

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----- 109
            +D+G     ++++EL      K+V + R + D SE+   +   L + +N          
Sbjct: 61  GADVGFTTVMELIDEL-----KKEVKL-RNIQDPSEVQSVISEKLVEIYNSGEEQISALN 114

Query: 110 ----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               R ++IL VGVNGVGKTT IGKL+ K+ + G  V+LAAGDTFR+ AI+QL++W +R+
Sbjct: 115 IEDGRLNIILFVGVNGVGKTTTIGKLANKLKNDGKSVILAAGDTFRAGAIEQLEVWGERS 174

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               V    GSD AA+ Y+A + A+AK  DVLI DTAGRL N   LM  + K+ RV++R 
Sbjct: 175 GVPVVKQTAGSDPAAVIYDAVQSAKAKNADVLICDTAGRLQNKVNLMKELEKVKRVIERE 234

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P APH VL  LDATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I     IP
Sbjct: 235 VPDAPHEVLLALDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELNIP 294

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           V  +G+GE ++DL+ F A+ +
Sbjct: 295 VKLVGLGEKVDDLQEFDAESY 315


>gi|332362458|gb|EGJ40258.1| cell division protein FtsY [Streptococcus sanguinis SK1056]
          Length = 506

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 160/258 (62%), Gaps = 8/258 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108
           I SD+GV VA  + EEL   RY   +   +    + +LI + L+ + +    FN   +F 
Sbjct: 243 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 299

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R    
Sbjct: 300 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 359

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     SD A++ Y++ ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP 
Sbjct: 360 VVTGPEKSDPASVVYDSMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 419

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  
Sbjct: 420 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 479

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D+  F +++F
Sbjct: 480 IGFGEKIDDIGEFNSENF 497


>gi|260588640|ref|ZP_05854553.1| signal recognition particle-docking protein FtsY [Blautia hansenii
           DSM 20583]
 gi|331082009|ref|ZP_08331137.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|260541115|gb|EEX21684.1| signal recognition particle-docking protein FtsY [Blautia hansenii
           DSM 20583]
 gi|330405604|gb|EGG85134.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 317

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 188/303 (62%), Gaps = 10/303 (3%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   + ++L +G + T   +  GI  I S    +DD   EE+E++L+  D+G+     I+
Sbjct: 6   EKKGFFKRLVEGLSKTRENIVSGIDSIFSGYSSIDDDFYEEIEEILVMGDLGINTTTAII 65

Query: 68  EEL---LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           E L   ++K++ K+ +  +++L D      K  M + +   ++F +R  VILV+GVNGVG
Sbjct: 66  ERLKEQVSKQHIKEPMECKKLLMDSI----KEQMQVGETA-YEFENRKSVILVIGVNGVG 120

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ K+   G KV++AA DTFR+AA +QL  WA+R   + +  + G+D A++ Y
Sbjct: 121 KTTSVGKLAGKLKGQGKKVIMAAADTFRAAAGEQLTQWANRAGVELIGGQDGADPASVVY 180

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A    +A+  DVLI DTAGRLHN   LM  + K+ R++++  P A    L VLD TTGQ
Sbjct: 181 DAIAATKARNADVLICDTAGRLHNKKNLMEELRKIYRIIEKEYPEAYLETLVVLDGTTGQ 240

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F+ VA  TG+I+TK+DGTA+GG  + I     IPV ++GVGEGI+DL+ F +
Sbjct: 241 NALAQARQFNEVANVTGIILTKLDGTAKGGIAVAIQSELDIPVKYIGVGEGIDDLQKFNS 300

Query: 304 KDF 306
            +F
Sbjct: 301 DEF 303


>gi|125718364|ref|YP_001035497.1| SRPR, signal recognition particle-docking protein [Streptococcus
           sanguinis SK36]
 gi|125498281|gb|ABN44947.1| SRPR, signal recognition particle-docking protein, putative
           [Streptococcus sanguinis SK36]
 gi|327474735|gb|EGF20140.1| cell division protein FtsY [Streptococcus sanguinis SK408]
          Length = 512

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108
           I SD+GV VA  + EEL   RY   +   +    + +LI + L+ + +    FN   +F 
Sbjct: 249 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 305

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R    
Sbjct: 306 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 365

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     SD A++ Y+  ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP 
Sbjct: 366 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 425

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  
Sbjct: 426 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 485

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D+  F +++F
Sbjct: 486 IGFGEKIDDIGEFNSENF 503


>gi|332358675|gb|EGJ36498.1| cell division protein FtsY [Streptococcus sanguinis SK355]
          Length = 512

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108
           I SD+GV VA  + EEL   RY   +   +    + +LI + L+ + +    FN   +F 
Sbjct: 249 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 305

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R    
Sbjct: 306 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 365

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     SD A++ Y+  ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP 
Sbjct: 366 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 425

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  
Sbjct: 426 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 485

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D+  F +++F
Sbjct: 486 IGFGEKIDDIGEFNSENF 503


>gi|148244853|ref|YP_001219547.1| cell division transporter substrate-binding protein FtsY
           [Candidatus Vesicomyosocius okutanii HA]
 gi|146326680|dbj|BAF61823.1| cell division transporter substrate-binding protein FtsY
           [Candidatus Vesicomyosocius okutanii HA]
          Length = 319

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 106/256 (41%), Positives = 162/256 (63%), Gaps = 11/256 (4%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--NWDFS---HR 110
           +D+G+    KI++   T++ A     ++ L +   L   +   L+K F  N   +   + 
Sbjct: 63  ADVGINTTDKIIKS--TRKNAS----RKTLKNAESLYQFLKDELAKLFIENNQLNISINE 116

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
             VILVVGVNG GKTT+IGKL+K   + G  VMLAAGDTFR+AAI+QLKIW  R +   V
Sbjct: 117 TFVILVVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAAIEQLKIWGQRNNIPVV 176

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
              +G+D A++ ++A++ AQAK +D+L+ DTAGRLH    LM  + K+ RV+ + + +AP
Sbjct: 177 AKTLGADTASVIFDAYQSAQAKNIDILLADTAGRLHTQDNLMQELAKIKRVITKQNINAP 236

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H  + V+D  +GQN + Q + F+     +G+ +TK+DGTA+GGGL  I     +P+ ++G
Sbjct: 237 HETMLVIDGGSGQNIINQAKEFNKAVNLSGISITKLDGTAKGGGLFSIADELNLPIRYIG 296

Query: 291 VGEGINDLEPFVAKDF 306
           +GEGI+DL+ F  K+F
Sbjct: 297 IGEGIDDLKIFQPKEF 312


>gi|76788040|ref|YP_329475.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae A909]
 gi|76563097|gb|ABA45681.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae A909]
          Length = 536

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/307 (41%), Positives = 183/307 (59%), Gaps = 11/307 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K  S+   + R L K     S +L   +++    RR+D+   EELE++LI SD+GV VA 
Sbjct: 227 KAESQEEKYNRSLKKTRTGFSARLNAFLSNF---RRVDEEFFEELEEMLILSDVGVNVAT 283

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGV 119
           ++ E+L   RY   +   +   D+  +I + L+ + +    +N   +F     V+L VGV
Sbjct: 284 QLTEDL---RYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V  E  +D A
Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEEKADPA 400

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA
Sbjct: 401 SVVFDGMEKAVAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TGLI+TK+DGTA+GG  + I     IPV F+G GE I+D+ 
Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVALAIRQELDIPVKFIGFGEKIDDIG 520

Query: 300 PFVAKDF 306
            F ++DF
Sbjct: 521 EFNSEDF 527


>gi|171780112|ref|ZP_02921016.1| hypothetical protein STRINF_01900 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281460|gb|EDT46895.1| hypothetical protein STRINF_01900 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 430

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 133/318 (41%), Positives = 188/318 (59%), Gaps = 14/318 (4%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           N  V +E   + R L K     S +L   + +    RR+D+   EELE++LI SD+GV V
Sbjct: 119 NAPVETEEEKYNRSLKKTRTGFSARLNAFLANF---RRVDEDFFEELEEMLILSDVGVNV 175

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVV 117
           A ++ E+L   RY   +   +   D+  +I + L+ + +    FN   +F     V+L V
Sbjct: 176 ATQLTEDL---RYEAKLENAKKADDLRRVIIEKLVEIYEKDGVFNEQINFQDGLTVMLFV 232

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K  + G KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 233 GVNGVGKTTSIGKLAYKYKNEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKAD 292

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  L
Sbjct: 293 PASVVFDGMERAVAENVDVLLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLAL 352

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D
Sbjct: 353 DASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDD 412

Query: 298 LEPFVAKDFSAVITGCLD 315
           +  F ++DF   I G L+
Sbjct: 413 IGEFDSEDF---IRGLLE 427


>gi|326692471|ref|ZP_08229476.1| signal recognition particle-docking protein FtsY [Leuconostoc
           argentinum KCTC 3773]
          Length = 312

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 123/311 (39%), Positives = 182/311 (58%), Gaps = 19/311 (6%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V +E   + + LTK     + K  + + +    R +D+   EELE+ L+ +D+G  +A K
Sbjct: 1   VVTEQEIYTQGLTKTRTGFAAKFNQFLANF---RSVDENFFEELEETLVGADVGFDMAIK 57

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVIL 115
           I +EL  +   K  + +R   DV ++I K ++ + +           FN   ++   VIL
Sbjct: 58  ISDEL--REEVKLANAKRP-EDVKQVIIKKMVDMYEADGVNEDATMHFN---ANGTTVIL 111

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G  V+LAA DTFR+ A  QL+ W +R     V  +  
Sbjct: 112 FVGVNGVGKTTTIGKLATKYQQQGKSVLLAAADTFRAGATKQLQEWGERAHVPVVAGKEK 171

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++ YEA  +A+ +  D+L +DTAGRL NN  LM  + KM R+++R  P APH VL 
Sbjct: 172 ADPASVVYEAVAKARDEHYDILFVDTAGRLQNNVNLMQELEKMKRIIQREIPDAPHEVLL 231

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNAL+Q ++F   +  TG+++TKMDGTA+GG +  I    ++PV ++G GE  
Sbjct: 232 VLDATTGQNALQQAKLFKDSSDVTGIVLTKMDGTAKGGIVFAIRNEMQLPVKWIGFGEKA 291

Query: 296 NDLEPFVAKDF 306
            DL  F  ++F
Sbjct: 292 QDLREFKPEEF 302


>gi|324991500|gb|EGC23433.1| cell division protein FtsY [Streptococcus sanguinis SK353]
          Length = 504

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108
           I SD+GV VA  + EEL   RY   +   +    + +LI + L+ + +    FN   +F 
Sbjct: 241 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 297

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R    
Sbjct: 298 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 357

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     SD A++ Y+  ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP 
Sbjct: 358 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 417

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  
Sbjct: 418 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 477

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D+  F +++F
Sbjct: 478 IGFGEKIDDIGEFNSENF 495


>gi|315640110|ref|ZP_07895232.1| cell division protein FtsY [Enterococcus italicus DSM 15952]
 gi|315484087|gb|EFU74561.1| cell division protein FtsY [Enterococcus italicus DSM 15952]
          Length = 334

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 116/264 (43%), Positives = 165/264 (62%), Gaps = 16/264 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--- 106
           LI +D+G   A +I E L  +   R AK  +      +V   I + L+ L +    D   
Sbjct: 65  LIGADVGFDTAIRISESLRQEVKLRNAKKPA------EVQNAIIEKLVNLYEEEGMDEVN 118

Query: 107 -FSHRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
             + +P    V+L VGVNGVGKTT IGKL+ ++   G K+MLAA DTFR+ AIDQL +W 
Sbjct: 119 ELAIQPDGLTVMLFVGVNGVGKTTSIGKLAHQLKQEGKKIMLAAADTFRAGAIDQLVVWG 178

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           +R   + V    G D AA+ ++A ++A+ ++VDVL+IDTAGRL N   LM  + K+ R++
Sbjct: 179 ERAGVEVVRGNAGGDPAAVVFDAMRRAKEEQVDVLLIDTAGRLQNKVNLMNELEKIQRII 238

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           +R +P APH VL VLDATTGQNA+ Q + F      TGL+++K+DGTA+GG ++ I    
Sbjct: 239 QREEPTAPHEVLLVLDATTGQNAMVQAKQFKETTNVTGLVLSKLDGTAKGGIVLAIRNEL 298

Query: 283 KIPVYFLGVGEGINDLEPFVAKDF 306
            +PV  +G+GEGI+DLEPF   +F
Sbjct: 299 HLPVKLVGLGEGIDDLEPFNPNEF 322


>gi|227499525|ref|ZP_03929632.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Anaerococcus
           tetradius ATCC 35098]
 gi|227218404|gb|EEI83655.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Anaerococcus
           tetradius ATCC 35098]
          Length = 395

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 190/302 (62%), Gaps = 13/302 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL- 70
           +  KL  G + T  +    + ++ +   ++DD + +ELE++LI +DIG+    +IV+EL 
Sbjct: 94  FFAKLKDGLSKTRDQFTSNLKNLFTRNVKIDDDLYDELEEILISADIGMTSTVEIVDELR 153

Query: 71  --LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGK 124
             + KR  KDV +   +Y V  E++ + L    K  + D   + +   VILV+GVNGVGK
Sbjct: 154 EEIKKRSIKDVDL---IYPVLKEIMTRKLDE--KNLDNDLKLKDNELSVILVIGVNGVGK 208

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+  +   G KVMLAA DTFR+AAI+QL  WA+R + + +  + GSD +A+ ++
Sbjct: 209 TTTIGKLANNLKKEGKKVMLAAADTFRAAAIEQLGEWAERANIEMISHQEGSDPSAVIFD 268

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K A+AK VDVLI DTAGRLHN   LM  + K+ + +      A    L  LDATTGQN
Sbjct: 269 AIKSAKAKNVDVLICDTAGRLHNKKNLMKELEKINKTIATHANKANRDNLLALDATTGQN 328

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q+  F  V   +GLI+TK+DGTA+GG + P+ V  ++PV ++GVGEGI+DLE F ++
Sbjct: 329 AVSQLREFKNVTDISGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGIDDLEKFNSE 388

Query: 305 DF 306
            F
Sbjct: 389 LF 390


>gi|291563453|emb|CBL42269.1| signal recognition particle-docking protein FtsY
           [butyrate-producing bacterium SS3/4]
          Length = 311

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/296 (42%), Positives = 178/296 (60%), Gaps = 4/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G   T   +  G+  I S    +DD   EELE+ LI  D+G+     ++E+L 
Sbjct: 8   FFSRLVEGLTKTRENIVSGMDSIFSGFSAIDDDFYEELEETLIMGDMGIQTTMAVIEDL- 66

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+  K+  ++        LI  +   +    N ++F HR  V+LV+GVNGVGKTT IGK
Sbjct: 67  -KKNVKEQHIKDPEQCREALIASIRSKMDLGENAYEFEHRKSVVLVIGVNGVGKTTSIGK 125

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++   G KV+LAA DTFR+AAIDQL  WA+R   + +  + GSD AA+ Y+A   A+
Sbjct: 126 LADQLKAEGKKVVLAAADTFRAAAIDQLAEWANRAGVELIAQKEGSDPAAVIYDAISAAK 185

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  DVLI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQNAL Q  
Sbjct: 186 SRNADVLICDTAGRLHNKKNLMEELKKINRIIDKEYPEAYRETLVVLDGTTGQNALVQAR 245

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F   A  TG+++TK+DGTA+GG  + I     IPV ++GVGE I+DL+ F ++DF
Sbjct: 246 QFMEAADITGIVLTKLDGTAKGGIAVAIQSELGIPVKYVGVGEKIDDLQKFNSEDF 301


>gi|154686011|ref|YP_001421172.1| hypothetical protein RBAM_015780 [Bacillus amyloliquefaciens FZB42]
 gi|154351862|gb|ABS73941.1| FtsY [Bacillus amyloliquefaciens FZB42]
          Length = 329

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/310 (40%), Positives = 188/310 (60%), Gaps = 10/310 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+  ++ S   K   G   T       + +++S  R++D+   EELE++LI +D+G   
Sbjct: 9   EKITKQTDSVSEKFKDGLEKTRNSFSNKVNELVSRYRKVDEDFFEELEEVLIGADVGFTT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILV 116
             ++++EL  K+  K  ++Q    +V  +I + L+ +    +   S       R +VIL+
Sbjct: 69  VMELIDEL--KKEVKLKNIQDP-QEVQSVISEKLVDIYNSGDEQISELNIQDERLNVILL 125

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ K+ + G  V+LAAGDTFR+ AI+QL++W +RT    +    GS
Sbjct: 126 VGVNGVGKTTTIGKLAHKLKNEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQAAGS 185

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A   A+A+  DVLI DTAGRL N   LM  + K+ RV++R  P APH VL  
Sbjct: 186 DPAAVIYDAVHAAKARGADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLA 245

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I     IPV  +G+GE ++
Sbjct: 246 LDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVD 305

Query: 297 DLEPFVAKDF 306
           DL+ F A+ +
Sbjct: 306 DLQRFDAESY 315


>gi|258648342|ref|ZP_05735811.1| signal recognition particle-docking protein FtsY [Prevotella
           tannerae ATCC 51259]
 gi|260851507|gb|EEX71376.1| signal recognition particle-docking protein FtsY [Prevotella
           tannerae ATCC 51259]
          Length = 321

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 113/272 (41%), Positives = 165/272 (60%), Gaps = 8/272 (2%)

Query: 53  LIRSDIGVA----VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF 107
           LI SD+GV     + ++I + +   +Y     + ++L D VS L+ +      + F    
Sbjct: 53  LISSDVGVETTVDIIRRIEDRVARDKYVTTSELNKLLRDEVSSLLTESGNNEDEGFIIPE 112

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           + RP+VILVVGVNGVGKTT IGKL+      G +V L A DTFR+AA++QL IW +R   
Sbjct: 113 NGRPYVILVVGVNGVGKTTTIGKLAYHFKQEGKRVYLGAADTFRAAAVEQLCIWGERIGV 172

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +  ++GSD A++AY+    A+A   DV++IDTAGRLHN   LM  + K+ +V++++ P
Sbjct: 173 PVIKQQMGSDPASVAYDTLSSAKANNADVVLIDTAGRLHNKVNLMNELTKIKKVIQKVIP 232

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            AP  VL VLD +TGQNA  Q + F      T L +TK+DGTA+GG ++ I    K+PV 
Sbjct: 233 EAPDEVLLVLDGSTGQNAFEQAKQFIKATDVTSLAITKLDGTAKGGVVLGISHQLKVPVR 292

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319
           ++G+GE + DL+PF   DF   +    D GE+
Sbjct: 293 YIGLGERMQDLQPFNKTDF---VESLFDTGEK 321


>gi|167758290|ref|ZP_02430417.1| hypothetical protein CLOSCI_00628 [Clostridium scindens ATCC 35704]
 gi|167664187|gb|EDS08317.1| hypothetical protein CLOSCI_00628 [Clostridium scindens ATCC 35704]
          Length = 314

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 134/302 (44%), Positives = 185/302 (61%), Gaps = 8/302 (2%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           ES+ + ++L  G   T   +  GI  I S    +DD   EELE++LI  D+GV     I+
Sbjct: 7   ESMGFFKRLVSGLGKTRDNIVSGIDSIFSGFSHIDDDFYEELEEVLIMGDLGVTATYDIL 66

Query: 68  EELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           E+L  K   ++ K+ S  R L  +  +  +M +  +    ++F  +  V++V+GVNGVGK
Sbjct: 67  EDLKAKVKEQHIKEPSQCRQLL-IDSIKEQMDVGETA---YEFEDQTSVVMVIGVNGVGK 122

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K+     KV+LAA DTFR+AA +QLK WA+R  AD +  + GSD A++ Y+
Sbjct: 123 TTTIGKLAGKLRAQNKKVVLAAADTFRAAAGEQLKEWANRAQADLIGGQEGSDPASVVYD 182

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+A+  DVL+ DTAGRLHN   LM  + KM R++ R  P A    L VLDATTGQN
Sbjct: 183 AVAAAKARHADVLLCDTAGRLHNKKNLMEELKKMNRIIDREYPEAFRETLVVLDATTGQN 242

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL+Q   F+ VA  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I DL+ F A 
Sbjct: 243 ALQQAREFNEVADITGIILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIEDLQKFDAD 302

Query: 305 DF 306
            F
Sbjct: 303 TF 304


>gi|254414380|ref|ZP_05028147.1| signal recognition particle-docking protein FtsY, putative
           [Microcoleus chthonoplastes PCC 7420]
 gi|196179055|gb|EDX74052.1| signal recognition particle-docking protein FtsY, putative
           [Microcoleus chthonoplastes PCC 7420]
          Length = 584

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 109/315 (34%), Positives = 187/315 (59%), Gaps = 6/315 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + V++E +SW+++L  G   T   L   +  I+    L+     E+E LL+++D+G+   
Sbjct: 270 EDVSAEEISWLKQLRSGLGKTRRGLVNQLKSIVGQGPLNQDAVMEIEALLLQADVGIEAT 329

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119
             I+E L  +   + +  ++ +  + +++  +L  P  + +   F       ++ L+ GV
Sbjct: 330 DYIIETLQARMRQEVLPPEQAIAYLKQILRDLLDKPCRESYGSTFFPEKDTLNIWLMTGV 389

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGKL+   + +  K ++ A DTFR+AA++Q+KIW +R+S + + +    +D 
Sbjct: 390 NGAGKTTTIGKLAHLANKSDYKCLIGAADTFRAAAVEQVKIWGERSSTEVIANPGKNTDP 449

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ +++   AQA+  ++L++DTAGRL N   LM  + K+ R++ +  P A    L VLD
Sbjct: 450 AAVVFDSITAAQARNTELLLVDTAGRLQNKKNLMEELAKIRRIIDKKAPEAKVESLLVLD 509

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + IV    +P+ F+G GEGI DL
Sbjct: 510 ATLGQNGLRQAEVFSEAAKLSGVVLTKLDGTAKGGVALAIVQQLGLPIRFVGAGEGIEDL 569

Query: 299 EPFVAKDF-SAVITG 312
            PF + +F  A+++G
Sbjct: 570 RPFSSYEFVEALLSG 584


>gi|227544365|ref|ZP_03974414.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri CF48-3A]
 gi|300909774|ref|ZP_07127235.1| cell division protein FtsY [Lactobacillus reuteri SD2112]
 gi|227185628|gb|EEI65699.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri CF48-3A]
 gi|300893639|gb|EFK86998.1| cell division protein FtsY [Lactobacillus reuteri SD2112]
          Length = 507

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 114/262 (43%), Positives = 159/262 (60%), Gaps = 10/262 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDF 107
           +LI SD+G  +A K+ +EL   R    +   +   DVS +I + ++ L     +  N D 
Sbjct: 237 MLIESDVGYDMAMKLSDEL---REEVKLQNAKSKQDVSNVIIEKMVELYDEAGQDENPDL 293

Query: 108 S---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           +     P VI+ VGVNG GKTT IGK++      G KV+LAA DTFR+ A +QL +WA R
Sbjct: 294 TMTKEGPTVIMFVGVNGAGKTTTIGKMAALFKKQGKKVLLAAADTFRAGATEQLDVWAKR 353

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              D V      D AA+ ++A K+A+ +  D+L +DTAGRL N   LM  + KM R+L R
Sbjct: 354 DGVDIVTGPENGDPAAVVFDAVKRAKDENYDILFVDTAGRLQNKVNLMNELAKMKRILTR 413

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
             P APH VL VLDATTGQNAL Q ++F      TG+++TK+DGTARGG ++ I     +
Sbjct: 414 EIPDAPHEVLLVLDATTGQNALNQAKLFKESTDVTGIVLTKLDGTARGGIVLAIRNELHL 473

Query: 285 PVYFLGVGEGINDLEPFVAKDF 306
           PV ++G+GE ++DL+ F A DF
Sbjct: 474 PVKYVGLGEKVDDLQKFDAGDF 495


>gi|324993860|gb|EGC25779.1| cell division protein FtsY [Streptococcus sanguinis SK405]
 gi|324994819|gb|EGC26732.1| cell division protein FtsY [Streptococcus sanguinis SK678]
 gi|325687260|gb|EGD29282.1| cell division protein FtsY [Streptococcus sanguinis SK72]
 gi|327463124|gb|EGF09445.1| cell division protein FtsY [Streptococcus sanguinis SK1]
          Length = 504

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108
           I SD+GV VA  + EEL   RY   +   +    + +LI + L+ + +    FN   +F 
Sbjct: 241 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 297

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R    
Sbjct: 298 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 357

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     SD A++ Y+  ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP 
Sbjct: 358 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 417

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  
Sbjct: 418 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 477

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D+  F +++F
Sbjct: 478 IGFGEKIDDIGEFNSENF 495


>gi|226356328|ref|YP_002786068.1| cell division protein FtsY, signal recognition particle-docking
           protein FtsY [Deinococcus deserti VCD115]
 gi|226318318|gb|ACO46314.1| putative Cell division protein ftsY, Signal recognition
           particle-docking protein FtsY [Deinococcus deserti
           VCD115]
          Length = 318

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 182/315 (57%), Gaps = 28/315 (8%)

Query: 11  LSWIRKLTKGFASTSLKLKE-------GITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +SW+ +L  G + T  ++ E        + D+ ++R L+    E+LE  LI +D+G A  
Sbjct: 1   MSWLERLRDGLSKTRKQINETAGFLGNDVRDVFTNR-LE--TIEDLEYALIAADVGRAAT 57

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-------PFNWDFSH-----RP 111
           ++I+E++   R ++  ++Q+ L D   L    L P ++        F  D S      + 
Sbjct: 58  EEILEDV---RSSEGKNLQQALMDALVL---QLEPDARRAEFRKLGFAPDVSRSRIDPKG 111

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           HV++V+GVNGVGKTT I KL +     G  VM AAGDTFR+AA  QL +W DR     V 
Sbjct: 112 HVVMVIGVNGVGKTTTIAKLGQYYMTRGKSVMFAAGDTFRAAAGAQLGVWGDRLGIPVVQ 171

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G D AA+A++      A+  D+L +DTAGRLHN   LM  + K+ RV+ + DP  P 
Sbjct: 172 GIDGGDPAAVAFDGASARAARGTDLLFVDTAGRLHNKHNLMEELKKVRRVIDKADPGEPA 231

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V  VLDA TGQN L+Q + FH     TG+I+TK+DGTA+GG LIPIV    +P+ F+GV
Sbjct: 232 EVWLVLDAVTGQNGLQQAKKFHEATPLTGVIVTKLDGTAKGGILIPIVRELGVPIKFIGV 291

Query: 292 GEGINDLEPFVAKDF 306
           GE   DL+PF +++F
Sbjct: 292 GEQAGDLQPFDSQEF 306


>gi|332367150|gb|EGJ44886.1| cell division protein FtsY [Streptococcus sanguinis SK1059]
          Length = 506

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108
           I SD+GV VA  + EEL   RY   +   +    + +LI + L+ + +    FN   +F 
Sbjct: 243 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 299

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R    
Sbjct: 300 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 359

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     SD A++ Y+  ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP 
Sbjct: 360 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 419

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  
Sbjct: 420 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 479

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D+  F +++F
Sbjct: 480 IGFGEKIDDIGEFNSENF 497


>gi|224369892|ref|YP_002604056.1| Srp [Desulfobacterium autotrophicum HRM2]
 gi|223692609|gb|ACN15892.1| Srp [Desulfobacterium autotrophicum HRM2]
          Length = 320

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/294 (42%), Positives = 189/294 (64%), Gaps = 6/294 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +  +G + T   L   I D+ S +R +DD + EE+E+ LI +D+GV +  K++E +   R
Sbjct: 24  RFKQGLSRTRDILFTDIDDLFSKKRVIDDTLLEEIEESLIMADLGVDLCLKVMENV--SR 81

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH--RPHVILVVGVNGVGKTTVIGKLS 132
            +K +S    L D+ +   + L P  +P   + +   +P VI+VVGVNG GKTT +GKL+
Sbjct: 82  KSKKLSTANELKDLLKAEIQALFP-GEPSAPEPTAVVKPRVIMVVGVNGTGKTTTLGKLA 140

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            K ++ G KV++AA DTFR+AAI+Q+  WA R +   V    G+D AA+A++  + A A+
Sbjct: 141 MKFTNEGQKVLIAAADTFRAAAIEQVSEWARRANVGIVKHRDGADPAAVAFDGVEAAIAR 200

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +DVL+IDTAGRLH    LM  + K+ R + +  P APH VL VLDATTGQNA+ Q ++F
Sbjct: 201 GIDVLLIDTAGRLHTQKNLMEELKKIKRTIAKRLPGAPHEVLMVLDATTGQNAISQAKLF 260

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +   G T L +TK+DGTA+GG  + I  T +IP+ ++G+GEGINDL+ F ++ F
Sbjct: 261 NEAVGVTALALTKLDGTAKGGIAVSISGTMEIPLKYIGLGEGINDLQEFNSQLF 314


>gi|261749202|ref|YP_003256887.1| signal recognition particle-docking protein FtsY [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
 gi|261497294|gb|ACX83744.1| signal recognition particle-docking protein FtsY [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
          Length = 320

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 109/281 (38%), Positives = 171/281 (60%), Gaps = 22/281 (7%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           +LD    + +E++L+ SDIG     KI+  L  K       +Q+  Y   E I K+   L
Sbjct: 37  KLDTDFIDHIEEILLSSDIGTETTIKIINNLEKK-------IQKEKYRGGE-IQKLYKLL 88

Query: 100 SKPFNWDFSH--------------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
            +   + F +              +P+VI++VGVNGVGKTT IGKL+  +   G  +++ 
Sbjct: 89  KEEIEFLFKNIKNECLEQKIKEERKPYVIMMVGVNGVGKTTTIGKLAFFLKKKGFNLIIG 148

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR AAI+QL+IW++  +   +   + +D A++AY+  + AQ++KVDV++IDTAGRL
Sbjct: 149 AADTFREAAINQLEIWSNTVNVPLIKQHMYADPASVAYDTLQSAQSRKVDVVLIDTAGRL 208

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N   LM  + K+ RV+K++   APH ++ VLDA+TGQNA  QV+ F +    + +I+TK
Sbjct: 209 QNRIGLMEELAKISRVMKKVISKAPHEIMLVLDASTGQNAFEQVKKFISFVKVSSIILTK 268

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++GTA+GG +I I+   ++P+ ++GVGE I DL+ F  K F
Sbjct: 269 LEGTAKGGVVIGIMDQFQVPIQYIGVGEKIQDLKEFNGKKF 309


>gi|327490292|gb|EGF22080.1| cell division protein FtsY [Streptococcus sanguinis SK1058]
          Length = 498

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108
           I SD+GV VA  + EEL   RY   +   +    + +LI + L+ + +    FN   +F 
Sbjct: 235 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 291

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R    
Sbjct: 292 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 351

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     SD A++ Y+  ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP 
Sbjct: 352 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 411

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  
Sbjct: 412 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 471

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D+  F +++F
Sbjct: 472 IGFGEKIDDIGEFNSENF 489


>gi|311745775|ref|ZP_07719560.1| signal recognition particle-docking protein FtsY [Algoriphagus sp.
           PR1]
 gi|126575974|gb|EAZ80252.1| signal recognition particle-docking protein FtsY [Algoriphagus sp.
           PR1]
          Length = 318

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 116/261 (44%), Positives = 160/261 (61%), Gaps = 7/261 (2%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFS- 108
           +LI SD+GV    K++  +  +R A+D  V     D  + E I  +L   +     DF  
Sbjct: 51  ILITSDVGVDTTIKVINRI-EERVARDKYVNTEELDKILKEEISGLLEENNTQDLLDFDI 109

Query: 109 ---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               +P+VI+VVGVNGVGKTT IGKL+     AG  V+L A DTFR+AA+DQL +W DR 
Sbjct: 110 PEGKKPYVIMVVGVNGVGKTTTIGKLANLFKSAGKNVILGAADTFRAAAVDQLILWGDRV 169

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +   + +D A++A++A KQ    + DV+IIDTAGRLH    LM  +GK+ RV+++ 
Sbjct: 170 GVPVISHGMNTDPASVAFDAVKQGVDTQADVVIIDTAGRLHTKVNLMNELGKIKRVMQKF 229

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P APH +L VLD +TGQNA  Q + F  V   T L +TK+DGTA+GG +I I    KIP
Sbjct: 230 IPDAPHEILLVLDGSTGQNAFIQAKEFTKVTEITSLAITKLDGTAKGGVVIGISDQFKIP 289

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           V ++GVGE + DL+ F  K+F
Sbjct: 290 VKYIGVGEKMTDLQLFNRKEF 310


>gi|332528924|ref|ZP_08404891.1| signal recognition particle-docking protein FtsY [Hylemonella
           gracilis ATCC 19624]
 gi|332041585|gb|EGI77944.1| signal recognition particle-docking protein FtsY [Hylemonella
           gracilis ATCC 19624]
          Length = 332

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 128/309 (41%), Positives = 193/309 (62%), Gaps = 19/309 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-- 70
           W+ KL  G   T      GI  + +  R+DD + E+LE+ L+ +D GV   Q ++++L  
Sbjct: 30  WLGKLRAGLRKTG----SGIATVFTGTRIDDALYEQLEEALLMADAGVKATQYLLDDLKH 85

Query: 71  -LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            + +  A D  +V+ +L D    + ++L PL +  N   +H+P VI+V GVNG GKTT I
Sbjct: 86  RVKESKATDPAAVKALLVDA---LTELLAPLEQTLNVG-AHKPTVIMVAGVNGAGKTTSI 141

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----TSADFVCSEIGSDAAALAYE 184
           GKL+  +++AG  V+LAA DTFR+AA +QL +WADR    T +  +  + G D A++ ++
Sbjct: 142 GKLTHHLAEAGASVLLAAADTFRAAAREQLMVWADRNRQGTGSVDIVHQAGGDPASVCFD 201

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A    +A+  DV+++DTAGRL     LM  I K+ RV+++ D  APH VL V+D  TGQN
Sbjct: 202 AVSAGKARGKDVVLVDTAGRLPTQLHLMEEIKKIKRVVQKADETAPHEVLLVIDGNTGQN 261

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK---IPVYFLGVGEGINDLEPF 301
           AL QV+ F    G TGLI+TK+DGTA+GG L  I +  +   +PVYF+GVGE +++LE F
Sbjct: 262 ALTQVKAFDEALGLTGLIVTKLDGTAKGGVLAAIALLSRERPLPVYFIGVGEQLDELETF 321

Query: 302 VAKDFSAVI 310
            A++F+  +
Sbjct: 322 EAREFAQAL 330


>gi|288905739|ref|YP_003430961.1| signal recognition particle (SRP)-docking protein [Streptococcus
           gallolyticus UCN34]
 gi|325978771|ref|YP_004288487.1| signal recognition particle-docking protein FtsY [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732465|emb|CBI14037.1| Putative signal recognition particle (SRP)-docking protein
           [Streptococcus gallolyticus UCN34]
 gi|325178699|emb|CBZ48743.1| signal recognition particle-docking protein FtsY [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 476

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 182/304 (59%), Gaps = 11/304 (3%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +E   + R L K     S +L   + +    RR+D+   EELE++LI SD+GV VA ++ 
Sbjct: 170 TEEEKYNRSLKKTRTGFSARLNAFLANF---RRVDEEFFEELEEMLILSDVGVNVATQLT 226

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGVNGV 122
           E+L   RY   +   +   D+  +I + L+ + +    FN   +F     V+L VGVNGV
Sbjct: 227 EDL---RYEAKLENAKRADDLKRVIIEKLVDIYEKDGVFNEKINFQDDLTVMLFVGVNGV 283

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ K  + G KVML A DTFR+ A+ QL  W  R     V     +D A++ 
Sbjct: 284 GKTTSIGKLAYKYKNEGKKVMLVAADTFRAGAVAQLVEWGRRVGVPVVTGPEKADPASVV 343

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++  ++A A+ VD+L+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TG
Sbjct: 344 FDGMEKAVAENVDILLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLALDASTG 403

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+  F 
Sbjct: 404 QNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGEFD 463

Query: 303 AKDF 306
           ++DF
Sbjct: 464 SEDF 467


>gi|260891156|ref|ZP_05902419.1| signal recognition particle-docking protein FtsY [Leptotrichia
           hofstadii F0254]
 gi|260859183|gb|EEX73683.1| signal recognition particle-docking protein FtsY [Leptotrichia
           hofstadii F0254]
          Length = 281

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 113/263 (42%), Positives = 162/263 (61%), Gaps = 17/263 (6%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSHR 110
           I+SDIG+ +  ++VEEL       + SV R     SE I+  L  L K    +N + S +
Sbjct: 20  IQSDIGMNMTMQLVEEL-------EKSVSRKKLKTSEQIYDELKELLKAKLIYNDESSTK 72

Query: 111 P-------HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
                   +++LVVGVNGVGKTT IGK++KK+ D+G KV++ AGDTFR+AAI+Q++ W  
Sbjct: 73  LKLQDGKLNILLVVGVNGVGKTTSIGKIAKKLKDSGKKVIIGAGDTFRAAAIEQVEEWGK 132

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           RT  + +    GSD AA+ ++  K A+ +  DV I+DTAGRLHN   LM  + K+ ++++
Sbjct: 133 RTGVEVIKQAHGSDPAAVIFDTVKTAKNRGFDVAILDTAGRLHNKRDLMKELEKINKIIR 192

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                     L V+D+TTGQN L Q  +F+ +   TG+I+TK DGTA+GG + PI    K
Sbjct: 193 EQSGETDFETLLVIDSTTGQNGLEQARIFNEIVDLTGIILTKFDGTAKGGIIFPITEELK 252

Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306
            P+ F+GVGEGI DL  F  K+F
Sbjct: 253 KPIKFIGVGEGIEDLREFDTKEF 275


>gi|148544381|ref|YP_001271751.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri DSM 20016]
 gi|184153745|ref|YP_001842086.1| signal recognition particle receptor [Lactobacillus reuteri JCM
           1112]
 gi|227363194|ref|ZP_03847328.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri MM2-3]
 gi|325682701|ref|ZP_08162217.1| cell division protein FtsY [Lactobacillus reuteri MM4-1A]
 gi|148531415|gb|ABQ83414.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri DSM 20016]
 gi|183225089|dbj|BAG25606.1| signal recognition particle receptor [Lactobacillus reuteri JCM
           1112]
 gi|227071800|gb|EEI10089.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri MM2-3]
 gi|324977051|gb|EGC14002.1| cell division protein FtsY [Lactobacillus reuteri MM4-1A]
          Length = 508

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 114/262 (43%), Positives = 159/262 (60%), Gaps = 10/262 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDF 107
           +LI SD+G  +A K+ +EL   R    +   +   DVS +I + ++ L     +  N D 
Sbjct: 238 MLIESDVGYDMAMKLSDEL---REEVKLQNAKSKQDVSNVIIEKMVELYDEAGQDENPDL 294

Query: 108 S---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           +     P VI+ VGVNG GKTT IGK++      G KV+LAA DTFR+ A +QL +WA R
Sbjct: 295 TMAKEGPTVIMFVGVNGAGKTTTIGKMAALFKKQGKKVLLAAADTFRAGATEQLDVWAKR 354

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              D V      D AA+ ++A K+A+ +  D+L +DTAGRL N   LM  + KM R+L R
Sbjct: 355 DGVDIVTGPENGDPAAVVFDAVKRAKDENYDILFVDTAGRLQNKVNLMNELAKMKRILTR 414

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
             P APH VL VLDATTGQNAL Q ++F      TG+++TK+DGTARGG ++ I     +
Sbjct: 415 EIPDAPHEVLLVLDATTGQNALNQAKLFKESTDVTGIVLTKLDGTARGGIVLAIRNELHL 474

Query: 285 PVYFLGVGEGINDLEPFVAKDF 306
           PV ++G+GE ++DL+ F A DF
Sbjct: 475 PVKYVGLGEKVDDLQKFDAGDF 496


>gi|119356176|ref|YP_910820.1| signal recognition particle-docking protein FtsY [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353525|gb|ABL64396.1| signal recognition particle-docking protein FtsY [Chlorobium
           phaeobacteroides DSM 266]
          Length = 316

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 126/306 (41%), Positives = 188/306 (61%), Gaps = 8/306 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + +L +G + TS   +E ++ I   +  +D+   EELE +L+ +D+GV     IV+ + T
Sbjct: 9   LSRLKEGLSKTSETFREKLSLITQGKTEIDEEFLEELEHILVGADVGVETTLSIVDAI-T 67

Query: 73  KRYAKDV--SVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTT 126
           +R  ++   S + +   + E I +ML+   + +  DF    S +P+VILVVGVNG GKTT
Sbjct: 68  ERAKRESYRSAEELNRMLMEEIQQMLLDSGEHYPIDFDAPLSAKPYVILVVGVNGAGKTT 127

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            + KL+     AG KV++AA DTFR+AA +QLKIWADR     +    G+D A++ Y+A 
Sbjct: 128 SVAKLAYNYEKAGKKVIIAAADTFRAAAYEQLKIWADRAGVPLIGQGQGADPASVVYDAV 187

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A ++  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQNA+
Sbjct: 188 SSAVSRNSDVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQNAV 247

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F      TGL++TK+DGT++GG ++ I     +PV ++GVGE I+DL+ F    F
Sbjct: 248 SQAREFTRFVNVTGLVLTKLDGTSKGGIVLSISRELNLPVKYIGVGEKIDDLQLFDRARF 307

Query: 307 SAVITG 312
              + G
Sbjct: 308 VEALLG 313


>gi|332358946|gb|EGJ36767.1| cell division protein FtsY [Streptococcus sanguinis SK49]
          Length = 512

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108
           I SD+GV VA  + EEL   RY   +   +    + +LI + L+ + +    FN   +F 
Sbjct: 249 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 305

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R    
Sbjct: 306 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 365

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     SD A++ Y+  ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP 
Sbjct: 366 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 425

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  
Sbjct: 426 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 485

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D+  F +++F
Sbjct: 486 IGFGEKIDDIGEFNSENF 503


>gi|218961112|ref|YP_001740887.1| Cell division protein FtsY [Candidatus Cloacamonas acidaminovorans]
 gi|167729769|emb|CAO80681.1| Cell division protein FtsY [Candidatus Cloacamonas acidaminovorans]
          Length = 324

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 177/301 (58%), Gaps = 5/301 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIV-- 67
           L+ ++ L +  A T+      IT+ +  R++ D+ +  E+E++L+  D G+ +   I+  
Sbjct: 17  LNIVKNLKEKLAKTNSNFMGKITETVKKRKVVDEEMLAEIEEILLSCDTGIEMTDIILTR 76

Query: 68  -EELLTKRYAKDVSVQRV-LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            +E L K    D  + ++ L DV   I       +  F  +   +P+V++ VGVNG GKT
Sbjct: 77  FKEQLKKDKVTDPEIAQIYLTDVMRDILLAENEETPDFFAEPQAKPYVVVFVGVNGTGKT 136

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGK++ K +  G KV++ AGDTFR+AAI+Q+ IWA+R     V S+  SD AA+ Y+ 
Sbjct: 137 TTIGKVAYKFNQMGKKVLIVAGDTFRAAAIEQIAIWAERAGVPIVRSQPDSDPAAIIYDG 196

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A A+  DV++IDTAGR H    LM  + K+ R +++L P APH V+ V+DATTGQNA
Sbjct: 197 VHSALARGYDVVLIDTAGRQHTKDNLMKELTKIERTIQKLIPDAPHEVILVVDATTGQNA 256

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q   F      TG+ +TK DGT++GG +  +    ++PV  LGVGEGI DL PF A  
Sbjct: 257 VSQAHNFDKAMKLTGIALTKYDGTSKGGIIFNLKYNLQLPVKLLGVGEGIEDLLPFKAVP 316

Query: 306 F 306
           F
Sbjct: 317 F 317


>gi|146296632|ref|YP_001180403.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410208|gb|ABP67212.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 300

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 121/297 (40%), Positives = 186/297 (62%), Gaps = 4/297 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     E + +++ + +++DD + +ELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFFDRLKEGLSKTKKNFTERVENLLKAFKQVDDELFDELEEVLVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  K     +S  +    V EL+ + +  +    N      P +IL+VGVNGVGKTT IG
Sbjct: 61  LKEKVKMNKISDSQA---VKELLKEEMFNIINLPNKLRERYPLIILMVGVNGVGKTTSIG 117

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++  +   G KV++AA DTFR+AAIDQL+IWA R   D +    G+D AA+ ++  +  
Sbjct: 118 KIANLLKSNGKKVIIAAADTFRAAAIDQLEIWAKRVGCDIIKHVEGADPAAVVFDGIQAM 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQN L Q 
Sbjct: 178 RARKADVLIVDTAGRLHTKKNLIEELRKIDRVINQQIPEAEKETLLVIDATTGQNGLIQA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F+     +G+++TK+DGTA+GG ++ I    KIPV F+GVGE I+DL+ F  K+F
Sbjct: 238 KEFNQAVNISGIVLTKLDGTAKGGIVVSICDELKIPVKFIGVGEKIDDLQEFDPKEF 294


>gi|332981633|ref|YP_004463074.1| signal recognition particle-docking protein FtsY [Mahella
           australiensis 50-1 BON]
 gi|332699311|gb|AEE96252.1| signal recognition particle-docking protein FtsY [Mahella
           australiensis 50-1 BON]
          Length = 304

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 134/306 (43%), Positives = 187/306 (61%), Gaps = 15/306 (4%)

Query: 16  KLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL  G A T       +  +I SS+ +D+   ++LE+LLI +D+G   A+ I+ ++  K+
Sbjct: 6   KLKSGLAKTRDNFSSRVDGLINSSKVIDEEFYDQLEELLILADVGAKAAESIINDI--KK 63

Query: 75  YAKDVSVQRVLYDVSE----LIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K    Q+ L D  +    L  ++   LSK   + D    P +ILVVGVNGVGKTT IG
Sbjct: 64  QVK----QQKLRDPEQVRALLKDELKRVLSKNAASKDMDLYPRIILVVGVNGVGKTTTIG 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K    G KV+LAA DTFR+AA +QL+IW+ R   D V  E GSD AA+ ++A + A
Sbjct: 120 KLAYKFKQDGRKVLLAAADTFRAAATEQLEIWSQRAGVDIVKHEEGSDPAAVVFDAIQSA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +AKK DV+I DTAGRLHN   LM  + K+ RV++R  P A   VL VLDATTGQNA+ Q 
Sbjct: 180 KAKKADVIICDTAGRLHNKKNLMEELKKVNRVVEREYPEAYKEVLLVLDATTGQNAVSQA 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F        + +TK+DGTA+GG +I I     +PV ++GVGEGI+DL+ F  ++F   
Sbjct: 240 RVFKEAVDINSIALTKLDGTAKGGVIIAIADELSVPVKYIGVGEGIDDLQDFEPQNF--- 296

Query: 310 ITGCLD 315
           ++  LD
Sbjct: 297 VSALLD 302


>gi|323351219|ref|ZP_08086875.1| cell division protein FtsY [Streptococcus sanguinis VMC66]
 gi|322122443|gb|EFX94154.1| cell division protein FtsY [Streptococcus sanguinis VMC66]
          Length = 506

 Score =  205 bits (521), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108
           I SD+GV VA  + EEL   RY   +   +    + +LI + L+ + +    FN   +F 
Sbjct: 243 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 299

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R    
Sbjct: 300 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 359

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     SD A++ Y+  ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP 
Sbjct: 360 VVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 419

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  
Sbjct: 420 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 479

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D+  F +++F
Sbjct: 480 IGFGEKIDDIGEFNSENF 497


>gi|330862600|emb|CBX72753.1| cell division protein ftsY [Yersinia enterocolitica W22703]
          Length = 439

 Score =  205 bits (521), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 113/263 (42%), Positives = 170/263 (64%), Gaps = 4/263 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 179 FFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTE 238

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
               K +     LY  + E + ++L  + KP   D S + P VIL+VGVNGVGKTT IGK
Sbjct: 239 HASRKQLKDAEALYGKLKEEMSEILSKVDKPL--DVSGKNPFVILMVGVNGVGKTTTIGK 296

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A++ ++A + A+
Sbjct: 297 LARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQAAK 356

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q +
Sbjct: 357 ARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAK 416

Query: 251 MFHAVAGTTGLIMTKMDGTARGG 273
           +F+   G TG+ +TK+DGTA+GG
Sbjct: 417 LFNEAVGLTGITLTKLDGTAKGG 439


>gi|306831836|ref|ZP_07464992.1| cell division protein FtsY [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426034|gb|EFM29150.1| cell division protein FtsY [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 488

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 182/304 (59%), Gaps = 11/304 (3%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +E   + R L K     S +L   + +    RR+D+   EELE++LI SD+GV VA ++ 
Sbjct: 182 TEEEKYNRSLKKTRTGFSARLNAFLANF---RRVDEEFFEELEEMLILSDVGVNVATQLT 238

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGVNGV 122
           E+L   RY   +   +   D+  +I + L+ + +    FN   +F     V+L VGVNGV
Sbjct: 239 EDL---RYEAKLENAKRADDLKRVIIEKLVDIYEKDGVFNEKINFQDDLTVMLFVGVNGV 295

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ K  + G KVML A DTFR+ A+ QL  W  R     V     +D A++ 
Sbjct: 296 GKTTSIGKLAYKYKNEGKKVMLVAADTFRAGAVAQLVEWGRRVGVPVVTGPEKADPASVV 355

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++  ++A A+ VD+L+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TG
Sbjct: 356 FDGMEKAVAENVDILLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLALDASTG 415

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+  F 
Sbjct: 416 QNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGEFD 475

Query: 303 AKDF 306
           ++DF
Sbjct: 476 SEDF 479


>gi|160897244|ref|YP_001562826.1| signal recognition particle-docking protein FtsY [Delftia
           acidovorans SPH-1]
 gi|160362828|gb|ABX34441.1| signal recognition particle-docking protein FtsY [Delftia
           acidovorans SPH-1]
          Length = 406

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 126/300 (42%), Positives = 185/300 (61%), Gaps = 7/300 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +W+++L  G   T       I  + +  +++D + EELED L+ +D GV   + ++ +L 
Sbjct: 111 NWMQRLKTGLRKTG----SSIATVFTGTQINDALYEELEDALLMADTGVKATEHLLADLR 166

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + + AK      V   +++ +  +L PL KP      H+P VI+V GVNG GKTT IGK
Sbjct: 167 RRVKEAKATDPAAVKALLADALADLLRPLEKPLVIG-EHQPTVIMVAGVNGAGKTTSIGK 225

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ ++D G  V+LAA DTFR+AA +QL +WA+R + + V  E G D AA++++A    +
Sbjct: 226 LTRHLADEGQSVLLAAADTFRAAAREQLGVWANRNTVEIVSQE-GGDPAAVSFDAVTAGR 284

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL QV 
Sbjct: 285 ARKKDVVLVDTAGRLPTQLHLMEELRKIRRVVSKADATAPHEVLLVIDGNTGQNALAQVR 344

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DLE F A++F+  +
Sbjct: 345 AFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKVEDLETFNAREFAQAL 404


>gi|306833958|ref|ZP_07467082.1| cell division protein FtsY [Streptococcus bovis ATCC 700338]
 gi|304423959|gb|EFM27101.1| cell division protein FtsY [Streptococcus bovis ATCC 700338]
          Length = 485

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 182/304 (59%), Gaps = 11/304 (3%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +E   + R L K     S +L   + +    RR+D+   EELE++LI SD+GV VA ++ 
Sbjct: 179 TEEEKYNRSLKKTRTGFSARLNAFLANF---RRVDEEFFEELEEMLILSDVGVNVATQLT 235

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGVNGV 122
           E+L   RY   +   +   D+  +I + L+ + +    FN   +F     V+L VGVNGV
Sbjct: 236 EDL---RYEAKLENAKRADDLKRVIIEKLVDIYEKDGVFNEKINFQDDLTVMLFVGVNGV 292

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ K  + G KVML A DTFR+ A+ QL  W  R     V     +D A++ 
Sbjct: 293 GKTTSIGKLAYKYKNEGKKVMLVAADTFRAGAVAQLVEWGRRVGVPVVTGPEKADPASVV 352

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++  ++A A+ VD+L+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TG
Sbjct: 353 FDGMEKAVAENVDILLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLALDASTG 412

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+  F 
Sbjct: 413 QNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGKFD 472

Query: 303 AKDF 306
           ++DF
Sbjct: 473 SEDF 476


>gi|224541340|ref|ZP_03681879.1| hypothetical protein CATMIT_00500 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525777|gb|EEF94882.1| hypothetical protein CATMIT_00500 [Catenibacterium mitsuokai DSM
           15897]
          Length = 326

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 120/288 (41%), Positives = 175/288 (60%), Gaps = 14/288 (4%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM- 97
           R ++D   +ELE++LI SD+GV +  KIV+E+  +   +++     + D+  ++ KM + 
Sbjct: 45  REINDEYFDELENILIMSDVGVNMVMKIVDEIKKEVRLENIKDPHAINDI--IVDKMFVI 102

Query: 98  -----PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFR 151
                 ++   N+   +   VIL+VGVNG GKTT I KL+ K M + G KVM+AAGDTFR
Sbjct: 103 YANDSYMTTKINY-AENDLTVILMVGVNGAGKTTTIAKLANKIMHEEGKKVMVAAGDTFR 161

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           + AI+QL  WA+R +   V  + G D +++ ++A +QA+    DVLI DTAGRL N   L
Sbjct: 162 AGAIEQLAEWANRLNIPCVKGKEGGDPSSVIFDALEQAKEGGYDVLICDTAGRLQNKVNL 221

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + KM R++KR+ P  P   L V+DATTGQN + Q   F  +   TG+++TKMDGTA+
Sbjct: 222 MKELEKMNRIIKRVVPEGPQETLLVVDATTGQNGISQAVEFSKITDITGIVLTKMDGTAK 281

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG-CLDYGE 318
           GG ++ I     IPV F+G+GE I+DL+ F   D    I G C D  E
Sbjct: 282 GGIILSIKDMLNIPVKFIGLGEKIDDLQEF---DLEQYIYGLCNDLME 326


>gi|227484995|ref|ZP_03915311.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227236992|gb|EEI87007.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 467

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 124/298 (41%), Positives = 187/298 (62%), Gaps = 3/298 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S   +L KG + T       ++++ +   ++DD + +ELE++LI +DIG++   +IV+ L
Sbjct: 165 SIFDRLKKGLSKTRDSFTSSLSNLFTRNVKIDDDLYDELEEILISADIGMSSTIEIVDSL 224

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVI 128
            ++   + +     +Y V  E++ + L   +      F   +  VILV+GVNGVGKTT I
Sbjct: 225 RSEIKKRSIKDSDKIYPVLKEIMTQKLDENNLDNGIKFEKGKLTVILVIGVNGVGKTTTI 284

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+    + G KVMLAA DTFR+AAIDQL+ WA+R   + +  + G+D +A+ ++A K 
Sbjct: 285 GKLANNFKNDGKKVMLAAADTFRAAAIDQLQEWAERADVELIAHKEGADPSAVIFDAIKS 344

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A++K VD+LI DTAGRLHN   LM  + K+ R +     +A    L VLDATTGQNA+ Q
Sbjct: 345 ARSKDVDILICDTAGRLHNKKNLMQELEKINRTIDTHAVNANRENLLVLDATTGQNAVSQ 404

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++ F  V   TGLI+TK+DGTA+GG + P+ V  ++PV ++GVGEGIN L+ F +  F
Sbjct: 405 LKEFKNVTDITGLILTKLDGTAKGGVIFPLQVEVEVPVKYIGVGEGINHLQKFDSNSF 462


>gi|319902103|ref|YP_004161831.1| signal recognition particle-docking protein FtsY [Bacteroides
           helcogenes P 36-108]
 gi|319417134|gb|ADV44245.1| signal recognition particle-docking protein FtsY [Bacteroides
           helcogenes P 36-108]
          Length = 319

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/296 (39%), Positives = 173/296 (58%), Gaps = 6/296 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL----L 71
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV    KI+  +     
Sbjct: 15  LDKGLSKTKESVFGKIARTVAGKSKVDDEVLDNLEEVLITSDVGVETTLKIIGRIEKRAA 74

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++Y     +  +L D ++ L+ +        F      +P+VI+VVGVNGVGKTT IGK
Sbjct: 75  AEKYMNAQELNMILRDEIAALLTENNSKDVDDFEAPIMKKPYVIMVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A++A++    A 
Sbjct: 135 LAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAFDTLSSAV 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++   AP  VL VLD +TGQNA  Q  
Sbjct: 195 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVSDAPDEVLLVLDGSTGQNAFEQAR 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F   +F
Sbjct: 255 QFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKVEF 310


>gi|20807911|ref|NP_623082.1| Signal recognition particle GTPase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516478|gb|AAM24686.1| Signal recognition particle GTPase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 295

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 111/256 (43%), Positives = 162/256 (63%), Gaps = 4/256 (1%)

Query: 56  SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+GV    KI++ L  K +  K     +V   +++ I+++L    +PF       P VI
Sbjct: 41  ADVGVDTTYKIIQSLKQKTKEEKIFEASKVRELLAQEIYEILQKDVEPF---VLTSPMVI 97

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNGVGKTT IGKL+      G  VM+ A DTFR+AAIDQL++WA R +   +  + 
Sbjct: 98  LIVGVNGVGKTTTIGKLAHLYKKQGKSVMMVAADTFRAAAIDQLEVWAKRVNCPIIKHQE 157

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD A++ ++  + A+A+ +DV+I DTAGRLHN   LM  + K+ +V+ R    A     
Sbjct: 158 GSDPASVVFDGLQSAKARGIDVVICDTAGRLHNKKNLMEELRKIRKVIDREYSEARVETF 217

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNAL+Q ++F  VA  TG+I+TK+DGTA+GG +I I     +P+ ++G+GEG
Sbjct: 218 LVLDATTGQNALQQAKIFKEVADITGIILTKLDGTAKGGIVIAIKEELNLPIRYIGIGEG 277

Query: 295 INDLEPFVAKDFSAVI 310
           + DL+ F AK F + I
Sbjct: 278 MEDLQAFDAKSFVSAI 293


>gi|262341286|ref|YP_003284141.1| cell division protein FtsY [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272623|gb|ACY40531.1| cell division protein FtsY [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 317

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 111/274 (40%), Positives = 173/274 (63%), Gaps = 10/274 (3%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           +++  V +++ED+L+ +DIG+    KI++ L  KR  K+    R   D+  L+ K +  L
Sbjct: 40  KIEINVIDQMEDILLSADIGIPTTIKIIDNL-EKRIQKEKY--RDTQDLYNLLKKEIENL 96

Query: 100 SKPFNWDF------SHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                 +       SH+ P+VI++VGVNGVGKTT IGKL+  +   G   ++ A DTFR+
Sbjct: 97  FINIKNECLEKKIKSHKKPYVIMMVGVNGVGKTTTIGKLAFLLKKKGFHSIIGASDTFRA 156

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAIDQL+IWA++     +   + +D A++AY+  + A++K+ DV++IDTAGRL N   LM
Sbjct: 157 AAIDQLEIWANKAKVPLIKQHMYADPASVAYDTLQSAKSKEKDVVLIDTAGRLQNRIGLM 216

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+ RV+K++ P +PH ++ VLDA+TGQNA  QV+ F      + +++TK++GTA+G
Sbjct: 217 EELSKISRVMKKIIPESPHEIMLVLDASTGQNAFEQVKKFTFFVKISSIVLTKIEGTAKG 276

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G  I I+   KIP+ +LG GE I DL+ F  K F
Sbjct: 277 GVAIGIMDQFKIPIQYLGTGEKIQDLKEFDGKKF 310


>gi|327461018|gb|EGF07351.1| cell division protein FtsY [Streptococcus sanguinis SK1057]
          Length = 504

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/263 (44%), Positives = 158/263 (60%), Gaps = 18/263 (6%)

Query: 54  IRSDIGVAVAQKIVEELLTKRY------AKDVSVQRVLYDVSELIHKMLMPLSKPFNWD- 106
           I SD+GV VA  + EEL   RY      AK  +  R L     +I K++    K   +D 
Sbjct: 241 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQL-----IIEKLVDIYEKDGRFDE 292

Query: 107 ---FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
              F +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  
Sbjct: 293 KINFQNGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGR 352

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           R     V     SD A++ Y+  ++AQA++VDVL+IDTAGRL N   LMA + K+ R++K
Sbjct: 353 RVDVPVVTGPEKSDPASVVYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIK 412

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           R+DP APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     
Sbjct: 413 RVDPEAPHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELD 472

Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306
           IPV  +G GE I+D+  F +++F
Sbjct: 473 IPVKLIGFGEKIDDIGEFNSENF 495


>gi|225868197|ref|YP_002744145.1| cell division protein FtsY [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701473|emb|CAW98619.1| putative cell division protein FtsY [Streptococcus equi subsp.
           zooepidemicus]
          Length = 485

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/304 (40%), Positives = 177/304 (58%), Gaps = 11/304 (3%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           S+   + R L K     S +L     +    RR+D+   E+LE+LLI SD+GV VA  + 
Sbjct: 179 SDQEKYKRSLKKTRTGFSARLNSFFANF---RRVDEDFFEDLEELLILSDVGVHVATTLT 235

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK---PFNWDFSHRPH--VILVVGVNGV 122
           EEL   RY   +   +    +  LI + L+ + +    +N    ++    V+L VGVNGV
Sbjct: 236 EEL---RYEAKLENAKKPEALKRLIIEKLVAIYEGDGRYNEAIHYQQDLTVMLFVGVNGV 292

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ 
Sbjct: 293 GKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVV 352

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++  ++A A+K D+L+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TG
Sbjct: 353 FDGVERAVAEKADILLIDTAGRLQNKDNLMAELEKIGRIIKRVIPDAPHETLLALDASTG 412

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV  +G GE I+D+  F 
Sbjct: 413 QNALSQAKEFSKITPLTGLILTKIDGTAKGGIVLAIRQELDIPVKLIGFGEAIDDIGEFH 472

Query: 303 AKDF 306
           ++DF
Sbjct: 473 SEDF 476


>gi|291532927|emb|CBL06040.1| signal recognition particle-docking protein FtsY [Megamonas
           hypermegale ART12/1]
          Length = 251

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 112/200 (56%), Positives = 144/200 (72%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VILV+GVNGVGKTT IGKL +   + G  VM AA DTFR+AAIDQL+IW  R +   +
Sbjct: 45  PTVILVIGVNGVGKTTTIGKLGRYYKEQGKNVMFAAADTFRAAAIDQLEIWGQRVNVPVI 104

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E GSD AA+ ++A K A A+KVD+LIIDTAGRLHN + LM  + K+ RV+KR    AP
Sbjct: 105 KHEEGSDPAAVVFDAVKAAIARKVDILIIDTAGRLHNKANLMTELNKIQRVIKREIAEAP 164

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H  L VLDATTGQNA+ Q E+F   A  +GL++TK+DGTA+GG +I +     +PV ++G
Sbjct: 165 HETLLVLDATTGQNAISQAELFTKSAPISGLVLTKLDGTAKGGVVIGLKSELSMPVKWIG 224

Query: 291 VGEGINDLEPFVAKDFSAVI 310
           VGEG++DL PFVA DF+A +
Sbjct: 225 VGEGMDDLRPFVANDFAAAL 244


>gi|116618657|ref|YP_819028.1| signal recognition particle-docking protein FtsY [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097504|gb|ABJ62655.1| signal recognition particle-docking protein FtsY [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 442

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 114/275 (41%), Positives = 167/275 (60%), Gaps = 9/275 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-- 96
           R +D+   E+LE+ L+ +D+G  +A KI +EL  +   K+   +  + DV  +I KM+  
Sbjct: 159 RSVDENFFEDLEETLVGADVGFDMAIKISDELREEVKLKNAKRKEDVRDV--IIKKMVDL 216

Query: 97  -----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                +      N+    +  VIL VGVNGVGKTT IGKL+ K   AG  V+LAA DTFR
Sbjct: 217 YEADGINEDATMNFAPKGQTTVILFVGVNGVGKTTTIGKLASKYQKAGKSVLLAAADTFR 276

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           + A  QL+ W +R     V  +  +D A++ + A ++A+ +  DVL +DTAGRL NN  L
Sbjct: 277 AGATKQLQEWGERAHVPVVAGKEKADPASVVFAAVEKARDENYDVLFVDTAGRLQNNVNL 336

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + KM R+++R  P APH VL VLDATTGQNAL+Q ++F   +  +G+++TKMDGTA+
Sbjct: 337 MQELEKMKRIIQREIPEAPHEVLLVLDATTGQNALQQAKLFKNSSDVSGIVLTKMDGTAK 396

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GG +  I     +PV ++G GE  +DL  F  ++F
Sbjct: 397 GGIVFAIRNEMHLPVKWIGFGEKASDLREFKPEEF 431


>gi|225419774|ref|ZP_03762077.1| hypothetical protein CLOSTASPAR_06112 [Clostridium asparagiforme
           DSM 15981]
 gi|225041578|gb|EEG51824.1| hypothetical protein CLOSTASPAR_06112 [Clostridium asparagiforme
           DSM 15981]
          Length = 314

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/296 (42%), Positives = 180/296 (60%), Gaps = 4/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G   T   +  GI  I S    +DD   EE+E+ LI  DIG+     IVE+L 
Sbjct: 8   FFGRLVEGLTKTRNNIVSGIDSIFSGFSAIDDDFYEEIEETLIMGDIGIQTTMSIVEDL- 66

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGK 130
            +R  K++ ++        LI+ +   +    N ++F H+  V+LV+GVNGVGKTT +GK
Sbjct: 67  -RRKVKELHIKEPEECKELLINSIKDQMDLGENAYEFEHKKSVVLVIGVNGVGKTTSVGK 125

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++ D G KV+LAA DTFR+AAI+QL  W++R   + +  + GSD AA+ Y+A   A+
Sbjct: 126 LAGQLKDQGRKVILAAADTFRAAAIEQLTEWSNRAGVEIIAQQEGSDPAAVIYDAVAAAK 185

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  DVLI DTAGRLHN   LM  + K+ R++ +    A    L VLD TTGQNAL Q  
Sbjct: 186 SRHADVLICDTAGRLHNKKNLMEELRKINRIIDKEYADAYRETLVVLDGTTGQNALAQAR 245

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F  VA  TG+I+TK+DGTA+GG  + I     +PV ++G+GE I+DL+ F A DF
Sbjct: 246 QFMEVADITGIILTKLDGTAKGGIAVAIQSELGLPVKYIGIGEKIDDLQKFNADDF 301


>gi|325690810|gb|EGD32811.1| cell division protein FtsY [Streptococcus sanguinis SK115]
          Length = 506

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 114/258 (44%), Positives = 159/258 (61%), Gaps = 8/258 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108
           I SD+GV VA  + EEL   RY   +   +    + +LI + L+ + +    FN   +F 
Sbjct: 243 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 299

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R    
Sbjct: 300 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 359

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     SD A++ Y+  ++AQ+++VDVL+IDTAGRL N   LMA + K+ R++KR+DP 
Sbjct: 360 VVTGPEKSDPASVVYDGMERAQSEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 419

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  
Sbjct: 420 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 479

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D+  F +++F
Sbjct: 480 IGFGEKIDDIGEFNSENF 497


>gi|308271405|emb|CBX28013.1| Cell division protein ftsY homolog [uncultured Desulfobacterium
           sp.]
          Length = 283

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/285 (43%), Positives = 188/285 (65%), Gaps = 13/285 (4%)

Query: 28  LKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
           + +G+T+I S ++ +DD + EELE+LLI SDIGV  A  +++ +  K  +     Q    
Sbjct: 1   MSDGLTNIFSGKKVIDDDMLEELEELLITSDIGVQTASDLIKSISKKTSSISSPDQ---- 56

Query: 87  DVSELIHKMLMPL-----SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
            ++E+I + ++ L     S+P     + +PHVILV+GVNGVGKTT IGKL+ K +    K
Sbjct: 57  -LNEIIKQEILALLSDKVSEPKT--ITAKPHVILVIGVNGVGKTTTIGKLAAKYAAKNKK 113

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V++ A DTFR+AA++QL IWA R  ++ V     +D AA+AY+  + A A+ +DV+IIDT
Sbjct: 114 VLIVAADTFRAAAVEQLTIWAQRAGSEIVKQMHNADPAAVAYDGVEAALARNIDVVIIDT 173

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH    LM  + K+ R + +  P APH +L VLDATTGQNAL Q ++F+   G TG+
Sbjct: 174 AGRLHTKINLMEELKKIKRSVSKRMPDAPHEILLVLDATTGQNALSQAKLFNDAIGVTGI 233

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            +TK+DGTA+GG +I +  + K+P+ ++G+GE I+DL+ F  ++F
Sbjct: 234 ALTKLDGTAKGGIVISVCNSFKLPIQYIGIGENIDDLQEFDPQNF 278


>gi|32472944|ref|NP_865938.1| cell division protein FtsY [Rhodopirellula baltica SH 1]
 gi|32397623|emb|CAD73624.1| cell division protein FtsY [Rhodopirellula baltica SH 1]
          Length = 337

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/300 (40%), Positives = 176/300 (58%), Gaps = 9/300 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISS--RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           K+  G   T   L   I D+  +  R +D+    EL   LIR+D+G   A +I + +   
Sbjct: 39  KMKTGLQKTRRVLGTDIRDLFKAEGRLVDEDFLGELYARLIRTDMGAGPAGRIRDRVAKD 98

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
              + V ++ V+  +++ I + L    K  + D +     P VILVVGVNG GKTT IGK
Sbjct: 99  FRGRVVHLEEVVETITQDIREQL----KQDHGDLAKADSPPTVILVVGVNGSGKTTSIGK 154

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS  +   G K++L AGDTFR+AA++QL IW++R   + V    G D A++AY+  ++A 
Sbjct: 155 LSHHLVSQGHKIVLGAGDTFRAAAVEQLTIWSERIGCEIVTGPSGVDPASVAYQTTEKAV 214

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D  IIDTAGRL     LM  + K+ RV+ +  P APH VL VLDAT GQNA+ Q +
Sbjct: 215 EIGADYAIIDTAGRLQTQGKLMQELEKIRRVIDKKLPGAPHEVLLVLDATAGQNAISQAK 274

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F   AG TG+I++K+DG+A+GG ++PI    ++PV F+G+GEGI D+  F    F+A +
Sbjct: 275 GFSNAAGCTGIILSKLDGSAKGGVVLPIREQFELPVKFVGLGEGIEDMTKFDPDTFAAAL 334


>gi|88802664|ref|ZP_01118191.1| putative recognition particle-docking protein [Polaribacter
           irgensii 23-P]
 gi|88781522|gb|EAR12700.1| putative recognition particle-docking protein [Polaribacter
           irgensii 23-P]
          Length = 317

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/299 (42%), Positives = 185/299 (61%), Gaps = 8/299 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T     + ++  ++ +  +D  V + LE++L+ SD+GV    KI++ +  +R 
Sbjct: 16  LDKGLEKTKANFFDKLSKAVAGKSTVDAAVLDNLEEVLVASDVGVKTTLKIIKRI-EERV 74

Query: 76  AKDVSVQR------VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           AKD  +        +  ++S L+ +  +     F    + +P+V++VVGVNGVGKTT IG
Sbjct: 75  AKDKYLGTDELNALLKEEISGLLSETNLENETEFTIPANKKPYVVMVVGVNGVGKTTTIG 134

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    GLKV+L A DTFR+AAIDQL+IWADRT    V  E+GSD A++A++    A
Sbjct: 135 KLASQFKKQGLKVVLGAADTFRAAAIDQLQIWADRTDVPIVRQEMGSDPASVAFDTLTSA 194

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  DV+IIDTAGRLHN   LM  + K+ RV++++   APH VL VLD +TGQNA  Q 
Sbjct: 195 VKQDADVVIIDTAGRLHNKVNLMNELTKIKRVMQKVVVDAPHEVLLVLDGSTGQNAFEQA 254

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           + F      T L +TK+DGTA+GG +I I    KIPV ++GVGEGI+DL+ F   +F A
Sbjct: 255 KHFTLATEVTSLAVTKLDGTAKGGVVIGISDQFKIPVKYIGVGEGIDDLQVFNKDEFVA 313


>gi|225849666|ref|YP_002729900.1| signal recognition particle-docking protein FtsY [Persephonella
           marina EX-H1]
 gi|225645118|gb|ACO03304.1| signal recognition particle-docking protein FtsY [Persephonella
           marina EX-H1]
          Length = 304

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 116/298 (38%), Positives = 184/298 (61%), Gaps = 6/298 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + KL +G + T  ++ +    I   R++D+ + E++E +L+++D+G+   ++I++ L 
Sbjct: 4   SIVSKLKEGLSKTKKQISDSFNLISFGRKIDESLFEDIEMVLLKADVGLKATEEIIQFLR 63

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
            +   + ++      D+ EL+ + L  + K           +P VIL +G+NG GKTT I
Sbjct: 64  EESKKRKITEGE---DLKELLKEKLYEILKKCEGKLELGDQKPAVILFLGINGSGKTTTI 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +    G  V+LAA DTFR+AAIDQL++WA+R+ A  V    G+D +A+ Y+A   
Sbjct: 121 GKLASQFVQEGKSVVLAAADTFRAAAIDQLEVWAERSGARIVKHTQGADPSAVVYDAVNS 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+++  D+++IDTAGRLH    LM  + K+ R +K+L P  P   + VLD T GQN++ Q
Sbjct: 181 AKSRGDDIVLIDTAGRLHTKEHLMKELQKIKRTIKKLMPDQPVETILVLDGTIGQNSINQ 240

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F      TG+++TK+DGTA+GG +IPI     IPV F+GVGE I DL+PF AK+F
Sbjct: 241 AKTFKESTDVTGIVITKLDGTAKGGAIIPICQELCIPVKFIGVGEDIEDLQPFDAKNF 298


>gi|317131324|ref|YP_004090638.1| signal recognition particle-docking protein FtsY [Ethanoligenens
           harbinense YUAN-3]
 gi|315469303|gb|ADU25907.1| signal recognition particle-docking protein FtsY [Ethanoligenens
           harbinense YUAN-3]
          Length = 312

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 116/257 (45%), Positives = 160/257 (62%), Gaps = 10/257 (3%)

Query: 54  IRSDIGVAVAQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
           + SD+GVA +  ++E+L   + K +  D   V+  L  V      M   L    +   + 
Sbjct: 45  VSSDVGVATSTYLIEKLRGRVKKEHIVDTDGVREALKAV------MTGELEGDVSLLLAP 98

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            P V+LV+GVNGVGKTT IGKL+ ++   G  V+L A DTFR+AAIDQL+IWA+R   D 
Sbjct: 99  APAVLLVIGVNGVGKTTTIGKLAAQLKAEGKAVLLGAADTFRAAAIDQLEIWAERAGVDI 158

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V  + G+D AA+ ++A +  +A+  DV+I DTAGRLHN   LM  + K+ RV+ R  P A
Sbjct: 159 VKQKEGADPAAVVFDAVQAGKARGADVVICDTAGRLHNKKSLMDELSKISRVIDRELPGA 218

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
               L VLDATTGQNA+ Q + F   AG TG+I+TK+DGTARGG +  I     +PV ++
Sbjct: 219 ARENLLVLDATTGQNAVNQAKQFKEAAGLTGIILTKLDGTARGGVVFAIRHELGVPVKYI 278

Query: 290 GVGEGINDLEPFVAKDF 306
           GVGE I+DL+PF  + F
Sbjct: 279 GVGEQIDDLQPFDPRAF 295


>gi|182413527|ref|YP_001818593.1| signal recognition particle-docking protein FtsY [Opitutus terrae
           PB90-1]
 gi|177840741|gb|ACB74993.1| signal recognition particle-docking protein FtsY [Opitutus terrae
           PB90-1]
          Length = 319

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/314 (37%), Positives = 175/314 (55%), Gaps = 16/314 (5%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            +K   G A T   +      +   R++D    EELE+ L  +D GV   ++I+ E+   
Sbjct: 5   FKKFKDGLAKTVSTIAAKTHGLFGGRKIDAASLEELEEALYAADFGVETTEEILAEI-KA 63

Query: 74  RYAKDVSV-------------QRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVG 118
            YAKD ++             +RVL      +         P +     S  P VI ++G
Sbjct: 64  AYAKDKTLQGQAAAAIGAAVLKRVLAGSEGALDGAGAGGPGPGSASPATSKEPIVIAMIG 123

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT   KL  ++ + G  V LAA DTFR+AA++QLK WA R   + V S  G+D+
Sbjct: 124 VNGSGKTTTAAKLGWRLKEDGKTVTLAACDTFRAAAVEQLKTWATRLDLEIVASHTGADS 183

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+A++A++ A+++  D LI+DTAGRLH    LM  + K+ RVL++ DP AP     V+D
Sbjct: 184 AAVAFDAWQAAKSRGRDYLIVDTAGRLHTKHNLMEELAKIRRVLQKNDPTAPQHRWLVVD 243

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            + G N++ Q   FH   G TGL++TK+DGT+RGG ++ I    K+P+YFLG+GE   DL
Sbjct: 244 GSLGSNSIEQARAFHKSFGLTGLVVTKLDGTSRGGAIVGIYRQLKLPIYFLGLGEQAEDL 303

Query: 299 EPFVAKDFSAVITG 312
           +PF  +++   + G
Sbjct: 304 QPFSVENYVNALFG 317


>gi|257469323|ref|ZP_05633417.1| Signal recognition particle receptor FtsY [Fusobacterium ulcerans
           ATCC 49185]
          Length = 386

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/307 (43%), Positives = 186/307 (60%), Gaps = 19/307 (6%)

Query: 18  TKGFASTSLKLK-----EGI-----TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +KGF  TSLK K     EG+     + I+    +D  + EELED+LI+SDIG+ +  KIV
Sbjct: 83  SKGFF-TSLKDKLFKSREGLFGKLKSFILGRSVIDFEMYEELEDILIQSDIGMDMTVKIV 141

Query: 68  ---EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
              E+ + KR  KD    + +Y V  E++   L+        +   + +VILVVGVNGVG
Sbjct: 142 GALEKEVKKRGIKD---PKDIYPVLKEVMEGFLIKEGNDIVIE-DGKLNVILVVGVNGVG 197

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K    G KV+L AGDTFR+AAI+QL+ WA R+ A+ V S  GSD  A+ +
Sbjct: 198 KTTTIGKLASKFVKDGKKVILGAGDTFRAAAIEQLEEWAKRSGAEIVKSTQGSDPGAVVF 257

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +    A+A+  D+ IIDTAGRLHN + LM  + K+  ++K+      +  + V+D TTGQ
Sbjct: 258 DTLAAAEARGADIAIIDTAGRLHNKNNLMKELEKIHNIIKKKLGDQHYESILVIDGTTGQ 317

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N L Q ++F+ V   TG I+TK+DGTA+GG +  I    K P+ F+GVGE I DL  F A
Sbjct: 318 NGLSQAKVFNEVTDLTGFIITKLDGTAKGGIVFSISEEIKKPIKFIGVGEKIEDLRKFDA 377

Query: 304 KDFSAVI 310
           K++   I
Sbjct: 378 KEYIQAI 384


>gi|293510004|ref|ZP_06668712.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus M809]
 gi|291466948|gb|EFF09466.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus M809]
          Length = 228

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/193 (52%), Positives = 132/193 (68%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +L+VGVNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +   
Sbjct: 1   MLMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQS 60

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            GSD AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  
Sbjct: 61  EGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEA 120

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L  LDATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE
Sbjct: 121 LLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGE 180

Query: 294 GINDLEPFVAKDF 306
            ++DL+PF  + +
Sbjct: 181 QLDDLQPFNPESY 193


>gi|81428324|ref|YP_395324.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78609966|emb|CAI55013.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 487

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/276 (41%), Positives = 168/276 (60%), Gaps = 11/276 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R +D+   +++E++LI +D+G   A KI +EL  +   ++V        VS+ I + L+ 
Sbjct: 188 RSVDESFFDDVEEMLIEADVGYETAMKIADELREEVKLRNVKKPEA---VSQAIVEKLVD 244

Query: 99  LSKPFNWDFSHRPH--------VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L         +  H        V L VGVNG GKTT IGK + ++  AG KV+LAAGDTF
Sbjct: 245 LYGQEGQQEDNELHFAPEGELTVFLFVGVNGAGKTTSIGKCAHQLEKAGKKVLLAAGDTF 304

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+ AI+QL+ W  R S   V ++ GSD AA+A++A K+A+ +  DVL++DTAGRL NN  
Sbjct: 305 RAGAIEQLQEWGRRVSVPVVANKAGSDPAAVAFDAVKRAKEENFDVLLVDTAGRLQNNVN 364

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + K+ RV+ R    AP  VL VLDATTGQNAL Q + F +    TG+++TK+DG+A
Sbjct: 365 LMKELEKVKRVITREISSAPQEVLLVLDATTGQNALVQAKQFKSTTDVTGIVLTKLDGSA 424

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +GG ++ +     +PV  +G+GE +NDL+ F    F
Sbjct: 425 KGGIVLAVRTELHLPVKMVGLGEQMNDLQLFDPNRF 460


>gi|195978483|ref|YP_002123727.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975188|gb|ACG62714.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 485

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 177/304 (58%), Gaps = 11/304 (3%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           S+   + R L K     S +L     +    RR+D+   E+LE+LLI SD+GV VA  + 
Sbjct: 179 SDQEKYKRSLKKTRTGFSARLNSFFANF---RRVDEDFFEDLEELLILSDVGVHVATTLT 235

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK---PFNWDFSHRPH--VILVVGVNGV 122
           EEL   RY   +   +    +  LI + L+ + +    +N    ++    V+L VGVNGV
Sbjct: 236 EEL---RYEAKLENAKKPEALKRLIIEKLVAIYEGDGRYNEAIHYQQDLTVMLFVGVNGV 292

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ 
Sbjct: 293 GKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVV 352

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++  ++A A++ D+L+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TG
Sbjct: 353 FDGVERAVAERADILLIDTAGRLQNKDNLMAELEKIGRIIKRVIPDAPHETLLALDASTG 412

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV  +G GE I+D+  F 
Sbjct: 413 QNALSQAKEFSKITPLTGLILTKIDGTAKGGIVLAIRQELDIPVKLIGFGEAIDDIGEFH 472

Query: 303 AKDF 306
           ++DF
Sbjct: 473 SEDF 476


>gi|260583721|ref|ZP_05851469.1| signal recognition particle-docking protein FtsY [Granulicatella
           elegans ATCC 700633]
 gi|260158347|gb|EEW93415.1| signal recognition particle-docking protein FtsY [Granulicatella
           elegans ATCC 700633]
          Length = 335

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 175/302 (57%), Gaps = 14/302 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG----VAVAQKIVE 68
           I K  +G   T     + + + ++  R +D+   ++LE+  I SD+G    +A+   + +
Sbjct: 29  IDKYDQGMQKTRKSFSDHLNEFLADFRTIDEDFFDDLEETFISSDVGFEMTLAITDALRD 88

Query: 69  ELLTKRYAKDVSVQRV----LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           E+  K       V++V    + D+ E     L  L+K        RP V+L VGVNGVGK
Sbjct: 89  EVRLKNAKNAHDVKQVIIEKMVDIYEKGEDNLATLAKA-----EGRPTVLLFVGVNGVGK 143

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGK++ ++   G  V+LAAGDTFR+ AI QL+IW +R     V  + G D +++ Y+
Sbjct: 144 TTTIGKIAWRLKQEGHSVLLAAGDTFRAGAIQQLEIWGERVGVPVVSGKEGGDPSSVVYD 203

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K+A+A+ +D L+IDTAGRL N   LM  + KM R++ R         L VLDATTGQN
Sbjct: 204 AIKKAKAENIDYLLIDTAGRLQNKVNLMKELEKMNRIISREIETGADETLLVLDATTGQN 263

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F      TGLI+TK+DGTA+GG ++ I     IPV F+G+GE ++DL+PF + 
Sbjct: 264 ALVQAKQFKETIDVTGLILTKLDGTAKGGVILSIRHEMNIPVKFIGLGEKMDDLQPFDST 323

Query: 305 DF 306
            F
Sbjct: 324 QF 325


>gi|227530554|ref|ZP_03960603.1| signal recognition particle-docking protein FtsY [Lactobacillus
           vaginalis ATCC 49540]
 gi|227349560|gb|EEJ39851.1| signal recognition particle-docking protein FtsY [Lactobacillus
           vaginalis ATCC 49540]
          Length = 456

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/260 (42%), Positives = 158/260 (60%), Gaps = 10/260 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDF 107
           I SD+G  +A K+ +EL   R    +   +   DVS +I + ++ L       +  + +F
Sbjct: 188 IESDVGYDMAMKLSDEL---REEVKLQNAKSKQDVSNVIIEKMVELYDEAGKDEKSDLNF 244

Query: 108 SHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +   P VI+ VGVNG GKTT IGK++      G KV+LAA DTFR+ A +QL +WA R  
Sbjct: 245 AKEGPTVIMFVGVNGAGKTTTIGKMAALFKSQGKKVLLAAADTFRAGATEQLDVWAKRDG 304

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D V      D AA+ ++A ++A+ +  D+L +DTAGRL N   LM  + KM R+L R  
Sbjct: 305 VDIVTGPENGDPAAVVFDAVQKAKKEDYDILFVDTAGRLQNKVNLMKELAKMKRILTREI 364

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL VLDATTGQNAL Q ++F      TG+++TK+DGTARGG ++ I     +PV
Sbjct: 365 PDAPHEVLLVLDATTGQNALNQAKLFKESTDVTGIVLTKLDGTARGGIVLAIRNELHLPV 424

Query: 287 YFLGVGEGINDLEPFVAKDF 306
            ++G+GE +NDL+ F A +F
Sbjct: 425 KYVGLGEKVNDLQKFDASEF 444


>gi|283798074|ref|ZP_06347227.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           M62/1]
 gi|291074216|gb|EFE11580.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           M62/1]
          Length = 311

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/301 (42%), Positives = 182/301 (60%), Gaps = 14/301 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G   T   +  GI  I S    +DD   EE+E+ LI  D+G+     I+E+L 
Sbjct: 8   FFGRLVEGLTKTRNSIVAGIDTIFSGFSAIDDDFYEEIEETLIMGDLGIQTTMAIMEDLR 67

Query: 72  TK---RYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            K    + K+ S      D  EL+ + +   M L +   ++F +R  V+LV+GVNGVGKT
Sbjct: 68  AKVKEHHIKEPS------DCKELLIESIRSQMDLGEN-AYEFENRKSVVLVIGVNGVGKT 120

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL+ ++   G KV+LAA DTFR+AAI+QL  WA+R   D +  + GSD AA+ Y+A
Sbjct: 121 TSVGKLAGQLKGQGKKVILAAADTFRAAAIEQLTEWANRAGVDLIAQQEGSDPAAVIYDA 180

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+++  DVLI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQNA
Sbjct: 181 IAAAKSRHADVLICDTAGRLHNKKNLMEELKKINRIIDKEFPEAYRETLVVLDGTTGQNA 240

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q + F  VA  TG+I+TK+DGTA+GG  + I     IPV ++G+GE I+DL+ F A D
Sbjct: 241 LSQAKQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYVGIGEKIDDLQKFNAND 300

Query: 306 F 306
           F
Sbjct: 301 F 301


>gi|281357053|ref|ZP_06243543.1| signal recognition particle-docking protein FtsY [Victivallis
           vadensis ATCC BAA-548]
 gi|281316611|gb|EFB00635.1| signal recognition particle-docking protein FtsY [Victivallis
           vadensis ATCC BAA-548]
          Length = 309

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/274 (38%), Positives = 171/274 (62%), Gaps = 6/274 (2%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNW 105
           ++LE +LI++D GV  + +IV ++  +    +++    L  V+ E +  +L    +P N+
Sbjct: 39  DDLEAMLIQADFGVPASLRIVGDIRDRYERGEIATDADLVKVAMETVTTILNSRVRPVNF 98

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               +P VIL+VGVNG GKTT IGKL+ ++     KV+LAA DTFR+AA++QL++W +RT
Sbjct: 99  APEGKPTVILMVGVNGSGKTTTIGKLAARLKAENKKVILAACDTFRAAAVEQLQLWGERT 158

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               V ++ G+D A++A++A + A A+  D L+IDTAGR HN   LM  + K+ R ++++
Sbjct: 159 GCQVVSAKHGADPASVAFDATQAALARGADFLLIDTAGRQHNQKGLMDELAKIRRSIEKV 218

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P APH V   +DA+ G N + Q   F    G TGL++TK+DGT +GG ++ +    ++P
Sbjct: 219 YPGAPHEVWLTVDASLGGNVVNQAREFTKTTGVTGLVLTKLDGTGKGGMVVALHQEFELP 278

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319
            +F+G GE   DL+PF A+ ++  +     +GEE
Sbjct: 279 TFFIGFGEQPEDLQPFSAEYYAGAL-----FGEE 307


>gi|42522713|ref|NP_968093.1| signal recognition particle-docking protein FtsY [Bdellovibrio
           bacteriovorus HD100]
 gi|39573909|emb|CAE79086.1| signal recognition particle-docking protein FtsY [Bdellovibrio
           bacteriovorus HD100]
          Length = 402

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/269 (40%), Positives = 167/269 (62%), Gaps = 9/269 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMP 98
           EE+E++L  SD+G A  Q++   +E+ L+K+   D      +++  + ++ +  H   + 
Sbjct: 128 EEIEEILYTSDLGPATVQRLMGAIEDKLSKKERADYDTVREALKEEIKNIFQGSHSTSVG 187

Query: 99  LSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                   F+   P V+++VGVNG GKTT IGK+S +++  G KV++AAGDTFR+AA  Q
Sbjct: 188 TGILSKIQFAAEGPTVLMIVGVNGAGKTTSIGKISAQLAAEGKKVLVAAGDTFRAAAGGQ 247

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LK+W DR   +    E  +D +A+A++A  + +A+  DV+I+DTAGRLH  + LM  I K
Sbjct: 248 LKVWTDRAQVEIFSPEGVTDPSAVAFDAVAKGKAQGYDVVIVDTAGRLHTQANLMEEIKK 307

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           M RV+ ++ P APH  L VLDA +GQNAL Q + FH     TG ++TKMDGTA+GG  + 
Sbjct: 308 MKRVMSKVIPEAPHETLIVLDANSGQNALMQAKEFHNALTLTGAVLTKMDGTAKGGVAVG 367

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +     IP+  +GVGE I DL  F +++F
Sbjct: 368 LAQELHIPIKLIGVGERIQDLRTFSSQEF 396


>gi|328946759|gb|EGG40897.1| cell division protein FtsY [Streptococcus sanguinis SK1087]
          Length = 498

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 158/258 (61%), Gaps = 8/258 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108
           I SD+GV VA  + EEL   RY   +   +    + +LI + L+ + +    FN   +F 
Sbjct: 235 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 291

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R    
Sbjct: 292 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 351

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     SD A++ Y+  ++A A+KVDVL+IDTAGRL N   LMA + K+ R++KR+DP 
Sbjct: 352 VVTGPEKSDPASVVYDGMERALAEKVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 411

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  
Sbjct: 412 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 471

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D+  F +++F
Sbjct: 472 IGFGEKIDDIGEFNSENF 489


>gi|194337595|ref|YP_002019389.1| signal recognition particle-docking protein FtsY [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310072|gb|ACF44772.1| signal recognition particle-docking protein FtsY [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 317

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/308 (40%), Positives = 181/308 (58%), Gaps = 12/308 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV----AVAQKIVE 68
           I +L +G   T    +E +  I   +  +DD   EELE +L+ +D+GV     +   I E
Sbjct: 9   ISRLKEGLEKTRDTFREKLAVITKGKTEIDDDFLEELETILVAADVGVETTLGIVDAITE 68

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----RPHVILVVGVNGVGK 124
               + Y  +  + R+L    E I ++L    +    DF      +P+VIL+VGVNG GK
Sbjct: 69  RAKQETYRSEEELNRMLM---EEIQQLLEETGEEHPLDFDAPLPAKPYVILIVGVNGAGK 125

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT + KL+     AG KV++AA DTFR+AA +QL+IWADR     +    GSD A++ Y+
Sbjct: 126 TTSVAKLAHNYDKAGKKVIIAAADTFRAAAYEQLQIWADRAGVPMIGQAQGSDPASVVYD 185

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A ++  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQN
Sbjct: 186 AVSAAVSRNADVVLVDTAGRLHNKSHLMEELAKIMRVAKKRIPEAPHEVLLVLDGTTGQN 245

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q   F      TGL++TK+DGTA+GG ++ I    K+PV ++GVGE I+DL+ F   
Sbjct: 246 AVLQAREFTKFVKVTGLVVTKLDGTAKGGIVLSISRELKLPVKYIGVGEKIDDLQLFDRA 305

Query: 305 DFSAVITG 312
           +F   + G
Sbjct: 306 EFVKALLG 313


>gi|186680629|ref|YP_001863825.1| signal recognition particle-docking protein FtsY [Nostoc
           punctiforme PCC 73102]
 gi|186463081|gb|ACC78882.1| signal recognition particle-docking protein FtsY [Nostoc
           punctiforme PCC 73102]
          Length = 547

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 180/308 (58%), Gaps = 5/308 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + V+ E ++W++KL +G   T   +   +  I+    L+     E+E LL+++D+GV   
Sbjct: 233 EDVSIEEITWLKKLRQGLDKTRRSILNQLKAIVGQGPLNQAAVTEIEALLLQADVGVEAT 292

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVI---LVVGV 119
             I+  L TK   +  + +  +  + +++  ML  P        F+     +   L+ GV
Sbjct: 293 DFIINALQTKLREEVTAPEEAIAYLKKILRDMLDAPSIASHKTSFTPEKETLNIWLITGV 352

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGK++     +G K ++ A DTFR+AA++Q+K+W  R+  + + +    +D 
Sbjct: 353 NGAGKTTTIGKIAHLGQKSGYKCLIGAADTFRAAAVEQVKVWGSRSGVEVIANPGKNTDP 412

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQ+++ ++L++DTAGRL N   LM  +GK+ R++ +  P+A    L VLD
Sbjct: 413 AAVVFDAIAAAQSRQTELLLVDTAGRLQNKKNLMDELGKIRRIIDKKAPNAKVESLLVLD 472

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G GEGI DL
Sbjct: 473 ATLGQNGLRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 532

Query: 299 EPFVAKDF 306
            PF + +F
Sbjct: 533 RPFSSYEF 540


>gi|325696121|gb|EGD38012.1| cell division protein FtsY [Streptococcus sanguinis SK160]
          Length = 506

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 158/258 (61%), Gaps = 8/258 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108
           I SD+GV VA  + EEL   RY   +   +    + +LI + L+ + +    FN   +F 
Sbjct: 243 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 299

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R    
Sbjct: 300 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 359

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     SD A++ Y+  ++A A+KVDVL+IDTAGRL N   LMA + K+ R++KR+DP 
Sbjct: 360 VVTGPEKSDPASVVYDGMERALAEKVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 419

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  
Sbjct: 420 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 479

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D+  F +++F
Sbjct: 480 IGFGEKIDDIGEFNSENF 497


>gi|325694854|gb|EGD36759.1| cell division protein FtsY [Streptococcus sanguinis SK150]
          Length = 504

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 158/258 (61%), Gaps = 8/258 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFS 108
           I SD+GV VA  + EEL   RY   +   +    + +LI + L+ + +    FN   +F 
Sbjct: 241 ITSDVGVQVASSLTEEL---RYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQ 297

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R    
Sbjct: 298 NGLTVMLFVGVNGVGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVP 357

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     SD A++ Y+  ++A A+KVDVL+IDTAGRL N   LMA + K+ R++KR+DP 
Sbjct: 358 VVTGPEKSDPASVVYDGMERALAEKVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPE 417

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  
Sbjct: 418 APHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKL 477

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D+  F +++F
Sbjct: 478 IGFGEKIDDIGEFNSENF 495


>gi|23098984|ref|NP_692450.1| signal recognition particle [Oceanobacillus iheyensis HTE831]
 gi|22777212|dbj|BAC13485.1| signal recognition particle (docking protein) [Oceanobacillus
           iheyensis HTE831]
          Length = 333

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 133/324 (41%), Positives = 186/324 (57%), Gaps = 26/324 (8%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           K  +E+     K  +G   T       + D+I+  R++D+   EELE++LI +D+GV   
Sbjct: 12  KQDNETKQVTEKYQEGMKKTRNSFSGKLNDLIARYRKVDEDFFEELEEVLITADVGVTTV 71

Query: 64  QKIVEELL--TKRYA-------KDVSVQRVLY----DVSELIHKMLMPLSKPFNWDFSHR 110
             +VEEL    KR         KDV  ++++     D  E I K+ +             
Sbjct: 72  MDLVEELKMEVKRQNIKDSEQIKDVISEKLVEIYYGDEDESIEKLKID---------GDG 122

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
             VILVVGVNG GKTT IGKL+ ++   G  V+LAAGDTFR+ AI+QL++W +R     +
Sbjct: 123 LKVILVVGVNGAGKTTSIGKLAHQLKQEGKNVVLAAGDTFRAGAIEQLEVWGERADVPVI 182

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               GSD AA+ Y+  + A+++  DVLI DTAGRL N   LM  + K+ RV++R  P AP
Sbjct: 183 KQSEGSDPAAVIYDGVQAAKSRNADVLICDTAGRLQNKVNLMNELSKVKRVIEREIPDAP 242

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H VL VLDATTGQNAL Q   F      TG+++TK+DGTA+GG ++ I    ++PV F+G
Sbjct: 243 HEVLLVLDATTGQNALNQARTFSDATDVTGIVLTKLDGTAKGGIVLAIRNELQLPVKFVG 302

Query: 291 VGEGINDLEPFVAKDFSAVITGCL 314
           +GE INDL+ F   D SA + G  
Sbjct: 303 LGEKINDLQQF---DASAFVYGLF 323


>gi|291542643|emb|CBL15753.1| signal recognition particle-docking protein FtsY [Ruminococcus
           bromii L2-63]
          Length = 304

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 135/301 (44%), Positives = 190/301 (63%), Gaps = 9/301 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + + +K+ +G   T   +   I  ++ S  ++DD + EELE+LL+  D+GV  A+KI +E
Sbjct: 1   MGFFKKIKEGLKKTRDAVVGQIDSMLKSFTKIDDELFEELEELLVMGDVGVPTAEKICKE 60

Query: 70  L---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           L   + K   KD S   +   + E+I  ML    +    D +  P +ILV+GVNGVGKTT
Sbjct: 61  LRERVKKEGIKDPS--EITSLLKEIIADMLRGGEE---LDLATSPSIILVIGVNGVGKTT 115

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+  +S  G KV+LAA DTFR+AAI+QL+IWADR+  + +  + GSD AA+ Y+A 
Sbjct: 116 TIGKLANALSKEGKKVILAAADTFRAAAIEQLEIWADRSKCEIIKQKEGSDPAAVIYDAI 175

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+  DV+I DTAGRLHN   LM  + K+ RV+ R  P A    L VLDATTGQNA+
Sbjct: 176 SAAKARHADVIICDTAGRLHNKKHLMDELAKINRVIDRELPDASKEKLLVLDATTGQNAV 235

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q E F    G TG+++TK+DGTA+GG ++ I     IPV ++GVGE I+DL+PF    F
Sbjct: 236 NQAEQFRQATGITGIVLTKLDGTAKGGVVLAIKDGLGIPVKYIGVGEQIDDLQPFNPDAF 295

Query: 307 S 307
           +
Sbjct: 296 A 296


>gi|121611665|ref|YP_999472.1| signal recognition particle-docking protein FtsY [Verminephrobacter
           eiseniae EF01-2]
 gi|121556305|gb|ABM60454.1| signal recognition particle-docking protein FtsY [Verminephrobacter
           eiseniae EF01-2]
          Length = 373

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 134/301 (44%), Positives = 182/301 (60%), Gaps = 11/301 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W+ +L  G   T       I+ + +  ++DD + EELE  L+ +D GV     ++ EL  
Sbjct: 79  WLLRLKSGLRKTG----SSISTVFTGTQIDDALYEELETALLLADTGVKATGHLLAEL-- 132

Query: 73  KRYAKD---VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           KR AK+        V   ++E + ++L PL K      +HRP VI+V GVNG GKTT IG
Sbjct: 133 KRRAKERRATDPAAVKALLAEALAELLRPLEKTLVIG-AHRPTVIMVAGVNGAGKTTSIG 191

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K ++DAG  V+LAA DTFR+AA +QL +WADR   + V  E G D AA+ ++A    
Sbjct: 192 KLTKHLADAGATVLLAAADTFRAAAREQLGVWADRNMVEIVGQE-GGDPAAVGFDAVSAG 250

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL VLD  TGQNAL QV
Sbjct: 251 KARGKDVVLVDTAGRLPTQLHLMQELAKIRRVIGKADAGAPHEVLLVLDGNTGQNALAQV 310

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F      TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DLE F A++FS  
Sbjct: 311 RAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKLEDLETFNAREFSQA 370

Query: 310 I 310
           +
Sbjct: 371 L 371


>gi|317063570|ref|ZP_07928055.1| signal recognition particle receptor FtsY [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689246|gb|EFS26081.1| signal recognition particle receptor FtsY [Fusobacterium ulcerans
           ATCC 49185]
          Length = 320

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 133/307 (43%), Positives = 186/307 (60%), Gaps = 19/307 (6%)

Query: 18  TKGFASTSLKLK-----EGI-----TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +KGF  TSLK K     EG+     + I+    +D  + EELED+LI+SDIG+ +  KIV
Sbjct: 17  SKGFF-TSLKDKLFKSREGLFGKLKSFILGRSVIDFEMYEELEDILIQSDIGMDMTVKIV 75

Query: 68  ---EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
              E+ + KR  KD    + +Y V  E++   L+        +   + +VILVVGVNGVG
Sbjct: 76  GALEKEVKKRGIKD---PKDIYPVLKEVMEGFLIKEGNDIVIE-DGKLNVILVVGVNGVG 131

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K    G KV+L AGDTFR+AAI+QL+ WA R+ A+ V S  GSD  A+ +
Sbjct: 132 KTTTIGKLASKFVKDGKKVILGAGDTFRAAAIEQLEEWAKRSGAEIVKSTQGSDPGAVVF 191

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +    A+A+  D+ IIDTAGRLHN + LM  + K+  ++K+      +  + V+D TTGQ
Sbjct: 192 DTLAAAEARGADIAIIDTAGRLHNKNNLMKELEKIHNIIKKKLGDQHYESILVIDGTTGQ 251

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N L Q ++F+ V   TG I+TK+DGTA+GG +  I    K P+ F+GVGE I DL  F A
Sbjct: 252 NGLSQAKVFNEVTDLTGFIITKLDGTAKGGIVFSISEEIKKPIKFIGVGEKIEDLRKFDA 311

Query: 304 KDFSAVI 310
           K++   I
Sbjct: 312 KEYIQAI 318


>gi|320547226|ref|ZP_08041519.1| cell division protein FtsY [Streptococcus equinus ATCC 9812]
 gi|320448114|gb|EFW88864.1| cell division protein FtsY [Streptococcus equinus ATCC 9812]
          Length = 440

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 131/312 (41%), Positives = 186/312 (59%), Gaps = 14/312 (4%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E   + R L K     S +L    T + + RR+D+   EELE++LI SD+GV VA ++ E
Sbjct: 135 EEEKYNRSLKKTRTGFSARLN---TFLANFRRVDEDFFEELEEMLILSDVGVNVATQLTE 191

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVILVVGVNGVG 123
           +L   RY   +   +   D+  +I + L+ + +    FN   +F     V+L VGVNGVG
Sbjct: 192 DL---RYEAKLENAKKADDLKRVIIEKLVEIYEKDGVFNEKINFQDDLTVMLFVGVNGVG 248

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K  + G KVML A DTFR+ A+ QL  W  R     V     +D A++ +
Sbjct: 249 KTTSIGKLAYKYKNEGKKVMLVAADTFRAGAVAQLAEWGRRVGVPVVTGPEKADPASVVF 308

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TGQ
Sbjct: 309 DGMERAVAENVDVLLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLALDASTGQ 368

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F +
Sbjct: 369 NALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKMDDIGEFDS 428

Query: 304 KDFSAVITGCLD 315
           +DF   I G L+
Sbjct: 429 EDF---IRGLLE 437


>gi|160903149|ref|YP_001568730.1| signal recognition particle-docking protein FtsY [Petrotoga mobilis
           SJ95]
 gi|160360793|gb|ABX32407.1| signal recognition particle-docking protein FtsY [Petrotoga mobilis
           SJ95]
          Length = 304

 Score =  202 bits (515), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/305 (41%), Positives = 183/305 (60%), Gaps = 7/305 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +    K   G +     + + I  I S + LDD V EELE++LI SD+GV V+ KI+EEL
Sbjct: 1   MGIFEKFKNGLSKARNTVFKNIKTIFSGKVLDDDVLEELEEILIMSDMGVEVSHKILEEL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + RY  + S    L  + +++ + L         DF  +P+VIL+VGVNG GKTT   K
Sbjct: 61  KS-RYKSNNSHNDPLLLLRDILVENLQ--KDEVVSDFQQKPYVILIVGVNGSGKTTTAAK 117

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K  S  G +V+LAA DTFR+AAI+QLK W +R +   +  + GSDAAA+ Y+A   A+
Sbjct: 118 LAKMYSKQGKEVVLAAADTFRAAAIEQLKEWGNRLNTTVIAHQKGSDAAAVVYDAITHAK 177

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  DV+++DTAGRLH  S LM  + K+ RV++R  P APH  L VLD TTGQN + Q +
Sbjct: 178 SRGKDVVLVDTAGRLHTKSNLMDELKKIRRVVEREVPGAPHETLLVLDGTTGQNGISQAK 237

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVAKDFSA 308
            F      TG+++TK+DGTA+GG  I   + H+  IP+  +G GE  +DL+ F    +  
Sbjct: 238 AFKEAIDITGIVVTKLDGTAKGG--IAFAINHELNIPIKLVGFGEKEDDLQIFDPVSYCN 295

Query: 309 VITGC 313
            + G 
Sbjct: 296 ALLGV 300


>gi|259046637|ref|ZP_05737038.1| signal recognition particle-docking protein FtsY [Granulicatella
           adiacens ATCC 49175]
 gi|259036802|gb|EEW38057.1| signal recognition particle-docking protein FtsY [Granulicatella
           adiacens ATCC 49175]
          Length = 334

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 173/303 (57%), Gaps = 16/303 (5%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-- 70
           I K  KG   T     + + + ++  R +D+   E+LE+  I SD+G  +   I + L  
Sbjct: 29  IEKYDKGMEKTRRSFSDRLNEFLADFREIDEDFFEDLEETFISSDVGFEMTLAITDALRD 88

Query: 71  -------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
                   T    K+V +++++ D+ E     L  L K        RP V++ VGVNGVG
Sbjct: 89  EVRLKNATTSGQVKEVIIEKMV-DIYEKGEDNLSVLKKA-----EGRPTVLMFVGVNGVG 142

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGK++ ++   G KV+LAAGDTFR+ AI QL++W +R     V  + G D +++ +
Sbjct: 143 KTTTIGKIAWRLKQEGNKVLLAAGDTFRAGAIQQLEVWGERVGVPVVAGKEGGDPSSVVF 202

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A K+A+ +  D L+IDTAGRL N   LM  + KM R++ R         L VLDATTGQ
Sbjct: 203 DAIKKAKEENFDYLLIDTAGRLQNKVNLMKELEKMNRIISREIETGADETLLVLDATTGQ 262

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F      TGLI+TK+DGTA+GG ++ I     IPV F+G+GE ++DL+PF  
Sbjct: 263 NALVQAKQFGETIDITGLILTKLDGTAKGGVILSIRHELNIPVKFIGLGEQMDDLQPFEP 322

Query: 304 KDF 306
           + F
Sbjct: 323 EQF 325


>gi|15606250|ref|NP_213628.1| cell division protein FtsY [Aquifex aeolicus VF5]
 gi|6225393|sp|O67066|FTSY_AQUAE RecName: Full=Cell division protein ftsY homolog
 gi|2983449|gb|AAC07030.1| cell division protein FtsY [Aquifex aeolicus VF5]
          Length = 461

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 187/304 (61%), Gaps = 5/304 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + KL +G   T   ++ G+  +   R++D+   EELE++L+++D+GV  A ++ E+L 
Sbjct: 163 SILDKLRRGLQKTKEAVEFGV--LFRGRKVDEEFFEELEEMLVKADVGVKTAVELTEKLR 220

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +   K++     + ++ +   K L+   +           V+L VGVNG GKTT IGKL
Sbjct: 221 KEAIRKNIKEGEKIKELLKKELKELLKNCQGELKIPEKVGAVLLFVGVNGSGKTTTIGKL 280

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++   G KV+L AGDTFR+AAI+QL++WA R   D V  E GSD  A+ YE  K+A+ 
Sbjct: 281 AHQLKQKGKKVLLVAGDTFRAAAIEQLEVWAKRAGVDIVKKEEGSDPGAVVYEGMKKAKE 340

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +V+++DTAGRLH    L+  + K+ +V+++ D   P   L V+DATTGQNA++Q ++
Sbjct: 341 EGYEVVLVDTAGRLHTKEPLINELRKIKKVIQKFDKEEPSETLLVIDATTGQNAIQQAKV 400

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG+A+GG ++ I    KIP+  +GVGEGI+DL+PF   D  A + 
Sbjct: 401 FKEAVDITGIVVTKLDGSAKGGAVVAICRELKIPIKLVGVGEGIDDLQPF---DADAYVE 457

Query: 312 GCLD 315
             L+
Sbjct: 458 ALLE 461


>gi|323484227|ref|ZP_08089596.1| hypothetical protein HMPREF9474_01347 [Clostridium symbiosum
           WAL-14163]
 gi|323692110|ref|ZP_08106356.1| signal recognition particle-docking protein FtsY [Clostridium
           symbiosum WAL-14673]
 gi|323402469|gb|EGA94798.1| hypothetical protein HMPREF9474_01347 [Clostridium symbiosum
           WAL-14163]
 gi|323503833|gb|EGB19649.1| signal recognition particle-docking protein FtsY [Clostridium
           symbiosum WAL-14673]
          Length = 314

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 176/295 (59%), Gaps = 2/295 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G   T   +  GI  I S    +DD   EE+E+ LI  D+G+     IVE+L 
Sbjct: 8   FFGRLVEGLTKTRNSIVSGIDSIFSGFSAIDDDFYEEIEETLIMGDLGIQTTMSIVEDLR 67

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            K     +       D+     K  M L +   ++F  +  V+LV+GVNGVGKTT +GKL
Sbjct: 68  RKVKENHIKEPSECKDLLVASIKSQMDLGEN-AYEFERQKSVVLVIGVNGVGKTTSVGKL 126

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++ D G KV+LAA DTFR+AAI+QL  W++R   + +  + GSD AA+ ++A   A++
Sbjct: 127 AGQLKDQGKKVILAAADTFRAAAIEQLTEWSNRAGVELIAQQEGSDPAAVIFDAIAAAKS 186

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVLI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQNAL Q + 
Sbjct: 187 RNADVLICDTAGRLHNKKNLMEELKKINRIIDKEYPDAYRETLVVLDGTTGQNALSQAKQ 246

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           F  VA  TG+I+TK+DGTA+GG  + I     IPV ++G+GE I+DL+ F A DF
Sbjct: 247 FMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYVGIGEKIDDLQKFDANDF 301


>gi|229541118|ref|ZP_04430178.1| signal recognition particle-docking protein FtsY [Bacillus
           coagulans 36D1]
 gi|229325538|gb|EEN91213.1| signal recognition particle-docking protein FtsY [Bacillus
           coagulans 36D1]
          Length = 332

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 119/298 (39%), Positives = 184/298 (61%), Gaps = 10/298 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K   G A T       + ++++  R++D+   EELE++LI++D+G     ++++EL  + 
Sbjct: 21  KFKTGLAKTRDNFSSKVNNLVARYRKIDEDFFEELEEILIQADVGFQTVMELIDELKMEV 80

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFSHRP-HVILVVGVNGVGKTTVI 128
             K++   +   +V  +I + L+ +       P   +       VIL VGVNGVGKTT I
Sbjct: 81  KRKNI---KAPSEVQSVISEKLVDIYSAGEDAPNQLNIQDGALTVILFVGVNGVGKTTTI 137

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  +   G KV++AAGDTFR+ AI+QL++W +R   + +    GSD AA+ ++A + 
Sbjct: 138 GKLAHMLKQQGKKVIMAAGDTFRAGAIEQLEVWGERVGVEVIKHSEGSDPAAVMFDAVQA 197

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+  DVL+ DTAGRL N   LM  + K+ RV++R  P APH VL VLDATTGQNA+ Q
Sbjct: 198 AKARNADVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVLLVLDATTGQNAMVQ 257

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL+PF A+ +
Sbjct: 258 AKTFKEATDVTGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGEKMDDLQPFDAEKY 315


>gi|303231828|ref|ZP_07318542.1| signal recognition particle-docking protein FtsY [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513506|gb|EFL55534.1| signal recognition particle-docking protein FtsY [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 233

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 103/199 (51%), Positives = 135/199 (67%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           H P VILVVGVNGVGKTT I KL+   +  G KV++AAGDTFR+AA DQL IWADR    
Sbjct: 22  HHPEVILVVGVNGVGKTTTIAKLANYYTKEGKKVIIAAGDTFRAAAADQLSIWADRVGVP 81

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V  + G+D AA+ Y+A + A+A+  D++I+DTAGRLH    LM  + KM RV       
Sbjct: 82  IVKHKEGADPAAVVYDAMEAAKARNADMVIVDTAGRLHTKVNLMEELKKMGRVANNHVEG 141

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH  L VLD TTGQNA+ Q ++F       G+++TK+DGTA+GG +I I     +PV +
Sbjct: 142 APHQTLLVLDGTTGQNAVSQAKLFGQAVPVNGIVVTKLDGTAKGGVVISIKEELGVPVRW 201

Query: 289 LGVGEGINDLEPFVAKDFS 307
           +GVGEG++DL PF AK+F+
Sbjct: 202 IGVGEGMDDLRPFNAKEFA 220


>gi|160934419|ref|ZP_02081806.1| hypothetical protein CLOLEP_03292 [Clostridium leptum DSM 753]
 gi|156867092|gb|EDO60464.1| hypothetical protein CLOLEP_03292 [Clostridium leptum DSM 753]
          Length = 305

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 116/256 (45%), Positives = 166/256 (64%), Gaps = 6/256 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           +  D+G+  AQ+I EEL   R  +D      +++  +  ++ +ML       +   + +P
Sbjct: 45  VMGDVGINTAQRICEEL-KARVKRDGVKDPNQIMGMLRNVVREML---EGDTSLHLATKP 100

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            +ILV+GVNGVGKTT IGK+S +++  G KV++AA DTFR+AAIDQL +WADR+ AD V 
Sbjct: 101 SIILVIGVNGVGKTTTIGKISARLTREGKKVVIAAADTFRAAAIDQLAVWADRSGADLVK 160

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              GSD AA+ ++A   A+++  DV+I DTAGRLHN   LM  + K+ R++ R  P A  
Sbjct: 161 QGEGSDPAAVVFDAISAAKSRNADVIICDTAGRLHNKKNLMDELSKIGRIIDRELPEAEK 220

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            +L VLDA TGQNA+ Q   F    G TG+++TK+DGTARGG +I I     +PV F+GV
Sbjct: 221 EILLVLDAATGQNAVNQAREFKNSCGITGIVLTKLDGTARGGVVIAIKEDLNVPVKFIGV 280

Query: 292 GEGINDLEPFVAKDFS 307
           GE I+DL+PF  +DF+
Sbjct: 281 GEQIDDLQPFDPEDFA 296


>gi|322373361|ref|ZP_08047897.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           C150]
 gi|321278403|gb|EFX55472.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           C150]
          Length = 490

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 128/320 (40%), Positives = 189/320 (59%), Gaps = 12/320 (3%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++  +V +E   + R L K     + +L E   +    RR+D+   EELE++LI SD+GV
Sbjct: 177 VATSQVETEQEKYDRTLKKTRTGFAARLNEFFANF---RRVDEEFFEELEEMLILSDVGV 233

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNW--DFSHRPHVIL 115
            VA ++ E+L   RY   +   +   D+  LI + L+ + +    +N   +F     V+L
Sbjct: 234 NVATQLTEDL---RYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYNEQINFQDGLTVML 290

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     
Sbjct: 291 FVGVNGVGKTTSIGKLAHKYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVEVPVVTGAEK 350

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L 
Sbjct: 351 ADPASVVFDGMEKALAEDVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLL 410

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            LDA+TGQNAL Q + F  +   TGLI+TK+DG+A+GG ++ I     IPV  +G GE I
Sbjct: 411 ALDASTGQNALSQAKEFSKITPLTGLILTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKI 470

Query: 296 NDLEPFVAKDF-SAVITGCL 314
           +D+  F +++F   ++TG +
Sbjct: 471 DDIGEFHSEEFMQGLLTGLV 490


>gi|187934978|ref|YP_001885441.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum B str. Eklund 17B]
 gi|187723131|gb|ACD24352.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum B str. Eklund 17B]
          Length = 302

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 116/257 (45%), Positives = 161/257 (62%), Gaps = 6/257 (2%)

Query: 56  SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-FSHRPHV 113
           SDIG+     I+E L  K R  K    Q V   + E+I ++L+      N++       V
Sbjct: 49  SDIGMDTTMDIIERLRKKIRKEKINDPQDVKPALKEVIKEILLE----GNYEEVDDEKKV 104

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +LV+GVNGVGKTT IGKL+ K   AG KV+L A DTFR+AAIDQL++W+ R   D +  +
Sbjct: 105 MLVIGVNGVGKTTSIGKLAAKNKRAGKKVLLIAADTFRAAAIDQLEVWSRRAEVDLIKHQ 164

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            GSD AA+ ++A + ++A+  D+LI DTAGRLHN   LM  + K+ R++ R         
Sbjct: 165 EGSDPAAVVFDAIEASKARNTDLLICDTAGRLHNKKNLMNELEKINRIIDRELDGVKKET 224

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLDATTGQNA+ Q + F  V    G+I+TK+DGTA+GG +I I  +  IPV ++GVGE
Sbjct: 225 LLVLDATTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKGGVVISIKQSLNIPVRYIGVGE 284

Query: 294 GINDLEPFVAKDFSAVI 310
           GI+DL+ F A+ F+  I
Sbjct: 285 GIDDLQEFDAEGFAEAI 301


>gi|188589484|ref|YP_001920588.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251778567|ref|ZP_04821487.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188499765|gb|ACD52901.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243082882|gb|EES48772.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 302

 Score =  202 bits (513), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 116/256 (45%), Positives = 160/256 (62%), Gaps = 4/256 (1%)

Query: 56  SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           SDIG+     I+E L  K R  K    Q V   + E+I ++L+  +   N D      V+
Sbjct: 49  SDIGMDTTMDIIERLRKKIRKEKINDPQDVKPALKEVIKEILLEGNYEDNDD---EKKVM 105

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           LV+GVNGVGKTT IGKL+ K   AG KV+L A DTFR+AAIDQL++W+ R   D +  + 
Sbjct: 106 LVIGVNGVGKTTSIGKLAAKNKRAGKKVLLIAADTFRAAAIDQLEVWSRRAEVDLIKHQE 165

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD AA+ ++A + ++A+  D+LI DTAGRLHN   LM  + K+ R++ R         L
Sbjct: 166 GSDPAAVVFDAIEASKARNTDLLICDTAGRLHNKKNLMNELEKINRIIDRELDGVKKETL 225

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNA+ Q + F  V    G+I+TK+DGTA+GG +I I  +  IPV ++GVGE 
Sbjct: 226 LVLDATTGQNAVIQAKQFMEVCPIDGIILTKLDGTAKGGVVISIKQSLNIPVRYIGVGEC 285

Query: 295 INDLEPFVAKDFSAVI 310
           I+DL+ F A+ F+  I
Sbjct: 286 IDDLQEFDAESFAEAI 301


>gi|320108301|ref|YP_004183891.1| signal recognition particle-docking protein FtsY [Terriglobus
           saanensis SP1PR4]
 gi|319926822|gb|ADV83897.1| signal recognition particle-docking protein FtsY [Terriglobus
           saanensis SP1PR4]
          Length = 376

 Score =  202 bits (513), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 177/303 (58%), Gaps = 11/303 (3%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           S  +  ++ +    T   L  GI  +++ +R +D    +ELE +LI SDIGV  AQ+I+ 
Sbjct: 72  SSGFFARMRQAVTRTRESLNSGIDSVLALTREVDTATLDELEAVLITSDIGVDTAQEIIA 131

Query: 69  ELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            L  +   + +       + +  ++ ++++ +  P+++      +  P VI++VGVNG G
Sbjct: 132 TLRQRALREGIDGGPELKRLLKLELLKILNSVRSPVARA-----ATPPEVIMMVGVNGTG 186

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT  GKL+          +L A DTFR+AAI+QL++WA R+  D V ++ G D +A  Y
Sbjct: 187 KTTTSGKLAALFRAQHRTALLCAADTFRAAAIEQLEVWAQRSGVDIVKTKQGGDPSAALY 246

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A    +A+KVDV+IIDTAGRLH  S LM  + KM R   ++ P APH    V+DATTGQ
Sbjct: 247 DALNAGKARKVDVVIIDTAGRLHTKSGLMTELDKMRRTAAKVIPDAPHQTFLVMDATTGQ 306

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N ++Q  +F   A  TG+++TK+DGTA+GG +I I     +PV + G+GE + DL  F A
Sbjct: 307 NGMQQARLFTEAAQVTGIVLTKLDGTAKGGIVIAIARELGLPVVYCGIGEKMEDLIAFDA 366

Query: 304 KDF 306
             F
Sbjct: 367 DAF 369


>gi|195645948|gb|ACG42442.1| cell division protein ftsY [Zea mays]
          Length = 362

 Score =  202 bits (513), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 188/306 (61%), Gaps = 10/306 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVAQKIVEE 69
           S + KL  GF+ T   L   + ++++   L D  R  ++LE+ L+ SD G  ++ +IV+ 
Sbjct: 58  SDVEKLFSGFSKTRENLSV-VDELLTYWNLADTDRVLDDLEEALLVSDFGPKISFRIVDT 116

Query: 70  LLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKT 125
           L  + R  K  S   +   +   I ++L   SK  N + +    +P VI++VGVNG GKT
Sbjct: 117 LREEIRDGKLKSCAEIKAALKRCILELLT--SKGGNSELNLGFRKPAVIMIVGVNGGGKT 174

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDAAALAYE 184
           T +GKL+ +  + G+KV++AAGDTFR+AA DQL++WA+RT ++ V  ++  +   A+  +
Sbjct: 175 TSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAQPPAVLSQ 234

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K+ + +  DV++ DT+GRLH N  LM  +    +VL +  P AP+ +L VLD TTG N
Sbjct: 235 AVKRGKREGFDVVLCDTSGRLHTNYGLMEELVSCKKVLAKALPGAPNEILLVLDGTTGLN 294

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L+Q   F+ V G TG I+TK+DGTARGG ++ +V    IPV F+GVGEG+ DL+PF A+
Sbjct: 295 MLQQAREFNDVVGVTGFILTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQPFDAE 354

Query: 305 DFSAVI 310
            F   I
Sbjct: 355 AFVEAI 360


>gi|110597634|ref|ZP_01385919.1| signal recognition particle-docking protein FtsY [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340754|gb|EAT59231.1| signal recognition particle-docking protein FtsY [Chlorobium
           ferrooxidans DSM 13031]
          Length = 317

 Score =  202 bits (513), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 184/305 (60%), Gaps = 6/305 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV----AVAQKIVE 68
           + KLT+G   T   L++ ++ I   +  +D+   EELE +L+ +D+GV     +   I E
Sbjct: 9   LSKLTEGLGKTRDTLRDKLSVITQGKTEIDEEFLEELETILVAADVGVETTLGIVDAITE 68

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
               + Y  +  +  +L + + +L+ +  +     F+     +P+VIL+VGVNG GKTT 
Sbjct: 69  RAKQETYRSETELNNMLMEEIQQLLQESGVDHPVDFDAPLPAKPYVILIVGVNGAGKTTS 128

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           + KL+     AG KV++AA DTFR+AA +QL+IWADR     +    GSD A++ Y+A  
Sbjct: 129 VAKLAHNYDKAGKKVIIAAADTFRAAAYEQLQIWADRAGVPMLGQAQGSDPASVVYDAVS 188

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A+  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQNA++
Sbjct: 189 AAVARNADVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQNAVQ 248

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F      TGL++TK+DGT++GG ++ I     +PV ++GVGE I+DL+ F   +F 
Sbjct: 249 QAREFTKFVKVTGLVVTKLDGTSKGGIVLSISRELGLPVKYIGVGEKIDDLQLFDRAEFV 308

Query: 308 AVITG 312
             + G
Sbjct: 309 GALLG 313


>gi|300727622|ref|ZP_07061011.1| signal recognition particle-docking protein FtsY [Prevotella
           bryantii B14]
 gi|299775142|gb|EFI71745.1| signal recognition particle-docking protein FtsY [Prevotella
           bryantii B14]
          Length = 318

 Score =  202 bits (513), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 115/261 (44%), Positives = 165/261 (63%), Gaps = 7/261 (2%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKP--FNWDF 107
           +LI SD+GV    KI+E +  KR  +D  VS   +   + E I  +L   +     NWD 
Sbjct: 51  ILITSDVGVETTVKIIERI-EKRVERDKYVSTSELNQILREEIASLLAENNSDDNSNWDL 109

Query: 108 --SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
              H+P+VILVVGVNGVGKTT IGKL+ +  +AG KV L A DTFR+AA++Q+ IW +R 
Sbjct: 110 PSDHKPYVILVVGVNGVGKTTTIGKLAYQFKNAGKKVYLGAADTFRAAAVEQICIWGERV 169

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +  + GSD A++A++  + A+A   DV++IDTAGRLHN   LM  + K+  V+K++
Sbjct: 170 GVPVIKQQQGSDPASVAFDTLQSAKANGADVVLIDTAGRLHNKIGLMNELKKVKEVMKKV 229

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P AP  ++ VLD +TGQNA  Q + F  V   T L +TK+DGTA+GG +I I    K+P
Sbjct: 230 LPDAPDEIMLVLDGSTGQNAFEQAKQFSKVTEITSLAITKLDGTAKGGVVIGISDQLKVP 289

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           V ++G+GEG+ D++ F   +F
Sbjct: 290 VKYIGLGEGMEDMQLFNKTEF 310


>gi|333030362|ref|ZP_08458423.1| signal recognition particle-docking protein FtsY [Bacteroides
           coprosuis DSM 18011]
 gi|332740959|gb|EGJ71441.1| signal recognition particle-docking protein FtsY [Bacteroides
           coprosuis DSM 18011]
          Length = 317

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 113/258 (43%), Positives = 161/258 (62%), Gaps = 6/258 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMP-LSKPFNWDFSHR 110
           I SD+GV    KI+E +   R +KD  V+ + +   + E I  +L+   +    +D   R
Sbjct: 53  ITSDVGVDTTLKIIERI-ENRVSKDKYVNTKELNAILREEIASLLIENKASDAAFDLPQR 111

Query: 111 --PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P+VI+VVGVNGVGKTT IGK++ K   AG  V L A DTFR+AA++QL+IW +R    
Sbjct: 112 DTPYVIMVVGVNGVGKTTTIGKIAAKFKAAGKSVYLGAADTFRAAAVEQLEIWGERVGVP 171

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +  ++GSD A++A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P 
Sbjct: 172 VIKQKMGSDPASVAFDTLSSAVANHADVVIIDTAGRLHNKINLMNELTKIKNVMKKIIPD 231

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           AP  VL VLD +TGQNA  Q + F        L +TK+DGTA+GG +I I    +IPV +
Sbjct: 232 APSEVLLVLDGSTGQNAFEQAKQFTLATEVNSLAITKLDGTAKGGVVIGISDQFQIPVKY 291

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G+GEGI+DL+ F  ++F
Sbjct: 292 IGLGEGIDDLQVFNKEEF 309


>gi|259503529|ref|ZP_05746431.1| signal recognition particle-docking protein FtsY [Lactobacillus
           antri DSM 16041]
 gi|259168607|gb|EEW53102.1| signal recognition particle-docking protein FtsY [Lactobacillus
           antri DSM 16041]
          Length = 447

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 111/261 (42%), Positives = 159/261 (60%), Gaps = 8/261 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDF- 107
           +LI SD+G  +A K+ + L  +   ++   ++ + +V  +I KM+       +  N D  
Sbjct: 177 MLIESDVGYDMAMKLSDSLREEVKLENAKSKQEVSNV--IIEKMVDLYEEAGRNENPDLQ 234

Query: 108 --SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             +  P VI+ VGVNG GKTT IGK++      G KV+LAA DTFR+ A +QL +WA R 
Sbjct: 235 MAAQGPTVIMFVGVNGAGKTTTIGKMAALFKRQGKKVLLAAADTFRAGATEQLDVWAQRD 294

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             D V      D AA+ ++A ++A+ +  DVL +DTAGRL N   LM  + KM R+L R 
Sbjct: 295 GVDIVTGPENGDPAAVVFDAVQKAKREDYDVLFVDTAGRLQNKVNLMNELAKMKRILTRE 354

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P APH VL VLDATTGQNAL Q ++F      TG+++TK+DGTARGG ++ I     +P
Sbjct: 355 IPDAPHEVLLVLDATTGQNALNQAKLFKQSTDVTGIVLTKLDGTARGGIVLAIRNELHLP 414

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           V ++G+GE ++DL+ F A DF
Sbjct: 415 VKYVGLGEKVDDLQKFNASDF 435


>gi|17229251|ref|NP_485799.1| cell division protein [Nostoc sp. PCC 7120]
 gi|17130849|dbj|BAB73458.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 546

 Score =  201 bits (512), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 182/315 (57%), Gaps = 6/315 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + ++ E ++W++KL +G   T   +   +  I+    L+     E+E LL+++D+GV   
Sbjct: 232 EDISIEEITWLKKLRQGLDKTRRNILNQLKAIVGQGPLNQAAVGEIEALLLQADVGVEAT 291

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119
             I+  L  K   +    +  +  + +++  ML  PL       F+      ++ L+ GV
Sbjct: 292 DYIISSLQKKLREEITPPEEAIAYLKQILRDMLDAPLKTSHKASFAPEKDSLNIWLITGV 351

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGK+S     +G + ++ A DTFR+AA++Q+K+W  R+  + + +    +D 
Sbjct: 352 NGAGKTTTIGKISHLAQQSGYRCLIGAADTFRAAAVEQVKVWGKRSGVEVISNPGKNTDP 411

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQA+  ++L++DTAGRL N   LM  + K+ R++ +  P A    L VLD
Sbjct: 412 AAVVFDAIAAAQARNTELLLVDTAGRLQNKKNLMDELSKIRRIIDKKAPDAKIESLLVLD 471

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +T GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G GEGI DL
Sbjct: 472 STLGQNGLRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 531

Query: 299 EPFVAKDF-SAVITG 312
            PF + +F  A+++G
Sbjct: 532 RPFSSYEFVEALLSG 546


>gi|315924203|ref|ZP_07920429.1| cell division protein FtsY [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622605|gb|EFV02560.1| cell division protein FtsY [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 305

 Score =  201 bits (512), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 185/311 (59%), Gaps = 14/311 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S  +++    A T     E I   +  + LD+   +ELE+ LI SD+ +  ++ I+++L 
Sbjct: 3   SLYQRMKDKLAGTKKNFSEKINRALYYKNLDENFFDELEESLILSDMSIETSEAIIDQLQ 62

Query: 72  TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   K +   + VL  +  ++ +M+   + P        P V+LVVGVNGVGKTT I K
Sbjct: 63  KEIKQKGIKKSEEVLGLLESIMTEMVTVTAAPMQM-----PAVMLVVGVNGVGKTTTIAK 117

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+++  + G  VMLAA DTFR+AA +QL+ WA+R   D + S  G+D A++ Y+A   A 
Sbjct: 118 LAQRYKNEGKTVMLAAADTFRAAAAEQLEAWAERIGVDIIASASGADPASVVYDALHAAH 177

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR----LDPHAPHSVLQVLDATTGQNAL 246
           ++  DVLI DTAGRLHN   LM  + K+ R++ R     D H     L V+DATTGQNAL
Sbjct: 178 SRHADVLICDTAGRLHNKVNLMNELEKLSRIIDREGQGFDVHN----LLVVDATTGQNAL 233

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F+     +G++MTKMDGTA+GG +IP++   KIPV ++G+GEG +DL PF A++F
Sbjct: 234 TQARTFNEAVHLSGIVMTKMDGTAKGGVVIPMINELKIPVEYVGLGEGADDLVPFDAREF 293

Query: 307 SAVITGCLDYG 317
             ++    D G
Sbjct: 294 VKLLYDTSDSG 304


>gi|313890272|ref|ZP_07823906.1| signal recognition particle-docking protein FtsY [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121377|gb|EFR44482.1| signal recognition particle-docking protein FtsY [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 494

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/297 (41%), Positives = 180/297 (60%), Gaps = 12/297 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           ++K   GFAS   +L     +    RR+D+   EELE++LI SD+GV VA  + ++L  +
Sbjct: 197 LKKTRSGFAS---RLNAFFANF---RRVDEEFFEELEEMLILSDVGVTVATTLTDQLRQE 250

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129
              ++     VL  V  +I K++    K      N ++ ++  V+L VGVNGVGKTT IG
Sbjct: 251 AKLENAKKPEVLRRV--IIEKLVAIYEKDGIYGENINYQNKLTVMLFVGVNGVGKTTSIG 308

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A
Sbjct: 309 KLAYRYKSEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGSEKADPASVVFDGVEKA 368

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A++VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q 
Sbjct: 369 VAQEVDILLIDTAGRLQNKENLMAELEKMGRIIKRVIPDAPHETLLALDASTGQNALSQA 428

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+  F +++F
Sbjct: 429 KEFSKIMPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGEFDSEEF 485


>gi|325846665|ref|ZP_08169580.1| signal recognition particle-docking protein FtsY [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481423|gb|EGC84464.1| signal recognition particle-docking protein FtsY [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 368

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/307 (41%), Positives = 187/307 (60%), Gaps = 15/307 (4%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E L +  KL+KG   T  +    + ++ ++  ++DD + +ELE++LI +DIG+    +IV
Sbjct: 62  EELGFFEKLSKGLTKTREQFSSKLKNLFTANVKIDDDLYDELEEILISADIGMQSTIEIV 121

Query: 68  EELLTKRYAKDVSVQRVLYDVSE---LIHKMLMPLSKPFNWDF-----SHRPHVILVVGV 119
           +EL      KD   +R + +  +   L+ +++       N D      + +  VILV+GV
Sbjct: 122 DEL------KDKIKERSIKNADQIFPLLKEIMEDKLDEKNLDNELLISNDKLSVILVIGV 175

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+  +   G KV LAA DTFR+AAI+QL  WA  ++   +  + GSD +
Sbjct: 176 NGVGKTTTIGKLAHNLKKEGHKVTLAAADTFRAAAIEQLDSWAKESNTQMIAHKEGSDPS 235

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A + A+A   DVLI DTAGRLHN   LM  + K+ R +     +A    L VLDA
Sbjct: 236 AVIFDAIQAAKANGSDVLICDTAGRLHNKKNLMNELEKINRTISTHANNANRENLLVLDA 295

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q+  F  V   TGLI+TK+DGTA+GG + P+ V  ++PV ++GVGEGI++LE
Sbjct: 296 TTGQNAISQLREFKNVCDITGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGIDNLE 355

Query: 300 PFVAKDF 306
            F +K F
Sbjct: 356 KFDSKSF 362


>gi|332523258|ref|ZP_08399510.1| signal recognition particle-docking protein FtsY [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314522|gb|EGJ27507.1| signal recognition particle-docking protein FtsY [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 499

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/317 (40%), Positives = 187/317 (58%), Gaps = 15/317 (4%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           SNQ+    SL   +K   GFAS   +L   + +    R +D+   EELE++LI SD+GV 
Sbjct: 193 SNQEKYDRSL---KKTRSGFAS---RLNAFLANF---RSVDEEFFEELEEMLILSDVGVT 243

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVV 117
           VA  + ++L  +   ++     VL  V  +I K++    K  N++    + +   V+L V
Sbjct: 244 VATTLTDQLRQEAKLENAKKPEVLRRV--IIEKLVAIYEKDGNYNEKINYQNNLTVMLFV 301

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 302 GVNGVGKTTSIGKLAYRYKSEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGSEKAD 361

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  L
Sbjct: 362 PASVVFDGVEKAVAENIDILLIDTAGRLQNKENLMAELEKMGRIIKRVIPDAPHETLLAL 421

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D
Sbjct: 422 DASTGQNALSQAKEFSKIMPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDD 481

Query: 298 LEPFVAKDFSAVITGCL 314
           +  F +++F   + G +
Sbjct: 482 IGEFDSEEFMKGLLGNM 498


>gi|154500959|ref|ZP_02038997.1| hypothetical protein BACCAP_04645 [Bacteroides capillosus ATCC
           29799]
 gi|150269983|gb|EDM97502.1| hypothetical protein BACCAP_04645 [Bacteroides capillosus ATCC
           29799]
          Length = 299

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 183/304 (60%), Gaps = 18/304 (5%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  K+  G   T   +   + D + +  LDD   +ELE+ LI  D+G+    K V EL
Sbjct: 1   MGFFDKIKAGLTRTKENIGHSL-DSLFAGELDDDFYDELEETLILGDMGMDTTIKAVAEL 59

Query: 71  LTKRYAKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             +  A+ +         ++RVL D+  +    L         D S  P VILV+GVNGV
Sbjct: 60  RRRVKAEKIKDTEGARECLRRVLTDMLNVGDCAL---------DLSASPAVILVIGVNGV 110

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL  ++   G KV+LAA DTFR+AA DQL+IW+ R+  + V    G+D AA+ 
Sbjct: 111 GKTTTIGKLGARLKGEGKKVLLAAADTFRAAAADQLEIWSQRSEVELVRQHEGADPAAVV 170

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+K DV+++DTAGRLHN   LM  + K+ RV+ R  P +    L VLDATTG
Sbjct: 171 FDAMQAAKARKTDVVLVDTAGRLHNKQNLMNELNKIGRVIDRELPGSRTETLLVLDATTG 230

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN L Q + F   AG TG+++TK+DG+A+GG +I I    ++PV ++GVGEGI+DL PF 
Sbjct: 231 QNGLIQAKQFMEAAGITGIVLTKLDGSAKGGVVIAIADALQVPVKYIGVGEGIDDLMPFD 290

Query: 303 AKDF 306
           A+ F
Sbjct: 291 AEYF 294


>gi|312869989|ref|ZP_07730128.1| signal recognition particle-docking protein FtsY [Lactobacillus
           oris PB013-T2-3]
 gi|311094574|gb|EFQ52879.1| signal recognition particle-docking protein FtsY [Lactobacillus
           oris PB013-T2-3]
          Length = 461

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/261 (42%), Positives = 160/261 (61%), Gaps = 8/261 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDF- 107
           +LI SD+G  +A K+ + L  +   ++   ++ + +V  +I KM+       +  N D  
Sbjct: 191 MLIESDVGYDMAMKLSDSLREEVKLENAKSKQEVSNV--IIEKMVDLYEEAGQGENPDLR 248

Query: 108 --SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             +  P VI+ VGVNG GKTT IGK++      G KV+LAA DTFR+ A +QL +WA R 
Sbjct: 249 MAAEGPTVIMFVGVNGAGKTTTIGKMAALFKRQGKKVLLAAADTFRAGATEQLDVWAQRD 308

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             D V      D AA+ ++A ++A+ +  DVL +DTAGRL N   LM  + KM R+L R 
Sbjct: 309 GVDIVTGPENGDPAAVVFDAVQKAKREDYDVLFVDTAGRLQNKVNLMNELAKMKRILTRE 368

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P APH VL VLDATTGQNAL QV++F      TG+++TK+DGTARGG ++ I     +P
Sbjct: 369 IPDAPHEVLLVLDATTGQNALNQVKLFKQSTDVTGIVLTKLDGTARGGIVLAIRNELHLP 428

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           V ++G+GE ++DL+ F A DF
Sbjct: 429 VKYVGLGEKVDDLQKFNASDF 449


>gi|302670931|ref|YP_003830891.1| signal recognition particle-docking protein FtsY [Butyrivibrio
           proteoclasticus B316]
 gi|302395404|gb|ADL34309.1| signal recognition particle-docking protein FtsY [Butyrivibrio
           proteoclasticus B316]
          Length = 304

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/300 (40%), Positives = 179/300 (59%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  KL +G + T   + +GI ++ S    +DD   EELE+ LI  DIG+    KI++EL 
Sbjct: 5   FFSKLQQGLSKTRDSIAKGIDNVFSGYSNIDDDFYEELEETLIMGDIGINATSKIMDELR 64

Query: 72  TK---RYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++   R+ KD     Q ++ D+   +H      +    +DF  +  VI V+GVNGVGKTT
Sbjct: 65  SQVKDRHIKDPQECKQLLIEDIRNQMH------TDENAYDFEDKKTVIFVIGVNGVGKTT 118

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL+      G KV++AA DT+R+AA +QL+ WADR     V    G+D A++ Y+A 
Sbjct: 119 SVGKLASIYKKKGKKVLIAAADTYRAAATEQLQSWADRAGTPIVSGREGADPASVIYDAV 178

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
              +A+ +D+LI+DTAGRLHN   LM  + KM R++ +   +       VLD TTGQNAL
Sbjct: 179 GAFKARDIDILIVDTAGRLHNKKNLMEELAKMNRIIDKELGNVCRENFIVLDGTTGQNAL 238

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F   A  TG+++TK+DGTA+GG  + IV    IPV ++GVGEG++DLE F + +F
Sbjct: 239 NQAREFGEAAQLTGIVLTKLDGTAKGGIAVAIVSELNIPVKYIGVGEGLDDLERFNSDEF 298


>gi|162447213|ref|YP_001620345.1| signal recognition particle GTPase [Acholeplasma laidlawii PG-8A]
 gi|161985320|gb|ABX80969.1| signal recognition particle GTPase [Acholeplasma laidlawii PG-8A]
          Length = 318

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/276 (40%), Positives = 166/276 (60%), Gaps = 9/276 (3%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
            S  ++D + + +EDLLI +DIGV        EL  +   K         D+SE I   L
Sbjct: 37  ESDTINDDLFDAIEDLLISADIGVDTVLHFTNELRNEVINKQFENPS---DLSETIVDKL 93

Query: 97  MP--LSKPF---NWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
               L   F      F+    +V L VGVNGVGKTT IGKL+K+  D G KV++ AGDTF
Sbjct: 94  FEIYLKDEFVDTTLSFTEGEVNVFLFVGVNGVGKTTTIGKLAKQYKDQGKKVLMVAGDTF 153

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+ AI+QL  W+ R   DF   + GSD +++ +EA ++A+ +  D++++DTAGRL N   
Sbjct: 154 RAGAIEQLYEWSKRAKVDFYQKDAGSDPSSVIFEALEKAKKETYDLVLVDTAGRLQNKVN 213

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + KM RV+++  P  P   L V+DATTGQN + Q ++F+     TG+++TK+DGTA
Sbjct: 214 LMNELSKMKRVIEKALPSQPAETLLVIDATTGQNGMNQAKVFNEATDLTGIVLTKLDGTA 273

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +GG ++ I   + +P+ ++G+GE I+DL PF  +D+
Sbjct: 274 KGGIVLAIRHLYNLPIKYVGLGEKIDDLVPFDIEDY 309


>gi|311108734|ref|YP_003981587.1| signal recognition particle-docking protein FtsY [Achromobacter
           xylosoxidans A8]
 gi|310763423|gb|ADP18872.1| signal recognition particle-docking protein FtsY [Achromobacter
           xylosoxidans A8]
          Length = 296

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/286 (39%), Positives = 171/286 (59%), Gaps = 7/286 (2%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDV 88
           + I  I    ++D+ + EELE  LI +D G+   +K++  L  +   + +    +V   +
Sbjct: 10  QSIGGIFVGVKVDENLFEELESALIMADAGLEATEKLLTALRARVKKERIEDPAKVKTAL 69

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            +L+   L PL + F+   +  P V+++ GVNG GKTT IGKL+      G  V+LAAGD
Sbjct: 70  RQLLADHLRPLERAFDLKRTQ-PLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGD 128

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+AA +QL  W  R +   V S+ G D AA+A++A    +A+ + V+++DTAGRL   
Sbjct: 129 TFRAAAREQLIEWGSRNNVT-VISQDGGDPAAVAFDAVNAGRARGMGVVMVDTAGRLPTQ 187

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  + K+ RV+ + D  APH VL V+D  TGQNAL Q+  F A    TGL++TK+DG
Sbjct: 188 LHLMEELKKIRRVIGKADAAAPHEVLLVVDGNTGQNALAQIRAFDAAINLTGLVVTKLDG 247

Query: 269 TARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAKDFSAVI 310
           TA+GG L  +    +    IPVY++GVGE + DL+PFVA +F+  +
Sbjct: 248 TAKGGTLAAVAAGSQGVRPIPVYWIGVGESLEDLQPFVADEFAGAL 293


>gi|227432059|ref|ZP_03914073.1| signal recognition particle-docking protein FtsY [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352176|gb|EEJ42388.1| signal recognition particle-docking protein FtsY [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 408

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/275 (41%), Positives = 166/275 (60%), Gaps = 9/275 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-- 96
           R +D+   E+LE+ L+ +D+G  +A KI +EL  +   K+   +  + DV  +I KM+  
Sbjct: 125 RSVDENFFEDLEETLVGADVGFDMAIKISDELREEVKLKNAKRKEDVRDV--IIKKMVDL 182

Query: 97  -----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                +      N+    +  VIL VGVNGVGKTT IGKL+ K   AG  V+LAA DTFR
Sbjct: 183 YEADGINEDATMNFAPKGQTTVILFVGVNGVGKTTTIGKLASKYQKAGKSVLLAAADTFR 242

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           + A  QL+ W +      V  +  +D A++ + A ++A+ +  DVL IDTAGRL NN  L
Sbjct: 243 AGATKQLQEWGECAYVPVVAGKEKADPASVVFAAVEKARDENYDVLFIDTAGRLQNNVNL 302

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + KM R+++R  P APH VL VLDATTGQNAL+Q ++F   +  +G+++TKMDGTA+
Sbjct: 303 MQELEKMKRIIQREIPEAPHEVLLVLDATTGQNALQQAKLFKNSSDVSGIVLTKMDGTAK 362

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GG +  I     +PV ++G GE  +DL  F  ++F
Sbjct: 363 GGIVFSIRNEMHLPVKWIGFGEKASDLREFNPEEF 397


>gi|312863726|ref|ZP_07723964.1| signal recognition particle-docking protein FtsY [Streptococcus
           vestibularis F0396]
 gi|311101262|gb|EFQ59467.1| signal recognition particle-docking protein FtsY [Streptococcus
           vestibularis F0396]
          Length = 434

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/319 (39%), Positives = 186/319 (58%), Gaps = 18/319 (5%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K  +E   + R L K     + +L E   +    RR+D+   EELE++LI SD+GV VA 
Sbjct: 125 KTETEQEKYNRTLKKTRTGFAARLNEFFANF---RRVDEEFFEELEEMLILSDVGVNVAT 181

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH--------VILV 116
           ++ E+L   RY   +   +   D+  LI + L+ +   +  D  ++ H        V+L 
Sbjct: 182 QLTEDL---RYEARLENVKKTEDLQRLIIEKLVDI---YEKDDVYKEHINFQDGLTVMLF 235

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     +
Sbjct: 236 VGVNGVGKTTSIGKLAHKYKQEGKKVMLVAADTFRAGAVAQLVEWGHRVDVPVVTGAEKA 295

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  
Sbjct: 296 DPASVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLA 355

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA+TGQNAL Q + F  +   TGL++TK+DG+A+GG ++ I     IPV  +G GE I+
Sbjct: 356 LDASTGQNALSQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKID 415

Query: 297 DLEPFVAKDF-SAVITGCL 314
           D+  F +++F   ++TG +
Sbjct: 416 DIGEFHSEEFMQGLLTGLV 434


>gi|89098683|ref|ZP_01171565.1| recognition particle-docking protein FtsY [Bacillus sp. NRRL
           B-14911]
 gi|89086645|gb|EAR65764.1| recognition particle-docking protein FtsY [Bacillus sp. NRRL
           B-14911]
          Length = 329

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/307 (39%), Positives = 185/307 (60%), Gaps = 6/307 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           K+  ++ +   K   G   T       + D+++  R++D+   EELE++LI++D+G    
Sbjct: 10  KITKQTDTVTEKFKDGLTKTRDNFSGKVNDLVARYRKVDEDFFEELEEILIQADVGFDTV 69

Query: 64  QKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            ++VEEL  +   K++     VQ ++ +    I++     S   N        VIL VGV
Sbjct: 70  MELVEELRMEVKRKNIQDPQGVQSIISEKLVEIYEGSGEASSALNIQ-EGDLTVILFVGV 128

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ K    G KV++AAGDTFR+ AI+QL++W DR   + +    GSD A
Sbjct: 129 NGVGKTTSIGKLAHKFKSEGKKVLMAAGDTFRAGAIEQLEVWGDRVGVEVIKQAEGSDPA 188

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A + A+++  D+L+ DTAGRL N   LM  + K+ RV++R  P APH VL  LDA
Sbjct: 189 AVMFDAVRAAKSRNADILLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVLLALDA 248

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F      +G+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL+
Sbjct: 249 TTGQNAMIQAKTFKEATDVSGIVLTKLDGTAKGGIVLAIRKELDIPVKFVGLGEKMDDLQ 308

Query: 300 PFVAKDF 306
            F A+ +
Sbjct: 309 EFDAERY 315


>gi|75906502|ref|YP_320798.1| signal recognition particle-docking protein FtsY [Anabaena
           variabilis ATCC 29413]
 gi|75700227|gb|ABA19903.1| signal recognition particle-docking protein FtsY [Anabaena
           variabilis ATCC 29413]
          Length = 546

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 182/315 (57%), Gaps = 6/315 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + ++ E ++W++KL +G   T   +   +  I+    L+     E+E LL+++D+GV   
Sbjct: 232 EDISIEEITWLKKLRQGLDKTRRSILNQLKAIVGQGPLNQAAVGEIEALLLQADVGVEAT 291

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119
             I+  L  K   +    +  +  + +++  ML  PL       F+      ++ L+ GV
Sbjct: 292 DYIISSLQKKLREEVTPPEEAIAYLKQILRDMLDAPLKTSHKASFAPDKDSLNIWLITGV 351

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGK+S     +G + ++ A DTFR+AA++Q+K+W  R+  + + +    +D 
Sbjct: 352 NGAGKTTTIGKISHLAKQSGYRCLIGAADTFRAAAVEQVKVWGKRSGVEVISNPGKNTDP 411

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQA+  ++L++DTAGRL N   LM  + K+ R++ +  P A    L VLD
Sbjct: 412 AAVVFDAIAAAQARNTELLLVDTAGRLQNKKNLMDELSKIRRIIDKKAPDAKIESLLVLD 471

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +T GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G GEGI DL
Sbjct: 472 STLGQNGLRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 531

Query: 299 EPFVAKDF-SAVITG 312
            PF + +F  A+++G
Sbjct: 532 RPFSSYEFVEALLSG 546


>gi|311029998|ref|ZP_07708088.1| signal recognition particle-docking protein FtsY [Bacillus sp.
           m3-13]
          Length = 332

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/308 (42%), Positives = 196/308 (63%), Gaps = 6/308 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+ +++ S   K  +G   T       + D+++  R++D+   EELE++LI +D+GV  
Sbjct: 9   EKLTTQTDSVTEKFREGLTKTRDSFSGKVNDLVARYRKVDEDFFEELEEILIGADVGVNT 68

Query: 63  AQKIVEEL---LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             ++++EL   + +R  +D   VQ V+ +    I++    +S   N+       V+LVVG
Sbjct: 69  VMELIDELRMEVKRRNIQDPREVQSVISEKLVEIYQAGEDVSPTINFQ-QDGLTVVLVVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++KK+   G  V+LAAGDTFR+ AIDQL++W +R   D +    GSD 
Sbjct: 128 VNGVGKTTSIGKIAKKLKQEGKSVLLAAGDTFRAGAIDQLEVWGERVGVDVIKQSEGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL VLD
Sbjct: 188 AAVMYDALQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVLD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q ++F      TG+++TK+DGTA+GG ++ I    KIPV F+G+GE   DL
Sbjct: 248 ATTGQNALSQAKIFSEATNVTGIVLTKLDGTAKGGIVLAIRNEMKIPVKFVGLGEKAEDL 307

Query: 299 EPFVAKDF 306
           + F A+ +
Sbjct: 308 QEFNAEQY 315


>gi|300172912|ref|YP_003772077.1| cell division protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299887290|emb|CBL91258.1| Cell division protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 388

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/299 (40%), Positives = 178/299 (59%), Gaps = 14/299 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + K   GFA+   K       + + R +D+   E+LE+ L+ +D+G  +A KI ++L  +
Sbjct: 88  LEKSRTGFAARFNKF------LANFRSVDEDFFEDLEETLVGADVGFDMAIKISDDLREE 141

Query: 74  RYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHV-----ILVVGVNGVGKTTV 127
              ++V     + DV  +I KM+ M  +   N D +   +V     IL+VGVNGVGKTT 
Sbjct: 142 VKLENVHRPEDVRDV--IIKKMVDMYEADGVNEDATMHFNVNGTTVILLVGVNGVGKTTT 199

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKLS K    G  V+LAA DTFR+ A  QL+ W  R     V  +  +D A++ +EA  
Sbjct: 200 IGKLSTKYQQQGKSVLLAAADTFRAGATKQLQEWGIRAGVPVVAGKEKADPASVVFEAVA 259

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+ +  D+L +DTAGRL NN  LM  + KM R++KR  P APH VL VLDATTGQNAL+
Sbjct: 260 KARDEHYDILFVDTAGRLQNNVNLMQELEKMKRIIKREIPGAPHEVLLVLDATTGQNALQ 319

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++F   +  TG+++TKMDGTA+GG +  I    ++PV ++G GE  +DL  F  ++F
Sbjct: 320 QAKLFKNSSDVTGIVLTKMDGTAKGGIVFAIRNDMQLPVKWVGFGEKASDLREFKPEEF 378


>gi|255281051|ref|ZP_05345606.1| signal recognition particle-docking protein FtsY [Bryantella
           formatexigens DSM 14469]
 gi|255268499|gb|EET61704.1| signal recognition particle-docking protein FtsY [Bryantella
           formatexigens DSM 14469]
          Length = 311

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/301 (42%), Positives = 181/301 (60%), Gaps = 4/301 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            E   + R+L +G + T   +  GI  I S    +D+   EE+E+ LI  D+G+     I
Sbjct: 2   EEKKGFFRRLAEGLSKTRDNIVSGIDSIFSGFSSIDEDFYEEIEETLIMGDLGINATTAI 61

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKT 125
           +E+L  K+  K+  ++        LI  +   +      ++F +R  V+LV+GVNGVGKT
Sbjct: 62  IEDL--KKKVKENHIKEPSECKRYLIESIRQQMEVTETAYEFENRTSVVLVIGVNGVGKT 119

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL+ K+ D G KV+LAA DTFR+AA +QL  WA+R   + +  + GSD A++ Y+A
Sbjct: 120 TSVGKLAGKLKDQGKKVVLAAADTFRAAAGEQLSEWANRAGVEIISGQEGSDPASVVYDA 179

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+  DVL+ DTAGRLHN   LM  +GK+ R+L++  P A    L VLD TTGQNA
Sbjct: 180 VAAAKARHADVLLCDTAGRLHNKKNLMNELGKINRILEKEYPEAYRETLVVLDGTTGQNA 239

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q   F  V   TG+I+TK+DGTA+GG  I I     IPV ++GVGE I DL+ F A++
Sbjct: 240 LVQAREFAEVTNITGIILTKLDGTAKGGIAIAIHSELGIPVKYIGVGESIEDLQKFNAEE 299

Query: 306 F 306
           F
Sbjct: 300 F 300


>gi|164414409|ref|NP_001105732.1| chloroplast srp54 receptor1 [Zea mays]
 gi|33413157|emb|CAD70570.1| chloroplast SRP receptor cpFtsY precursor [Zea mays]
 gi|238006492|gb|ACR34281.1| unknown [Zea mays]
          Length = 362

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 188/306 (61%), Gaps = 10/306 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVAQKIVEE 69
           S + KL  GF+ T   L   + ++++   L D  R  ++LE+ L+ SD G  ++ +IV+ 
Sbjct: 58  SDVEKLFSGFSKTRENLSV-VDELLTYWNLADTDRVLDDLEEALLVSDFGPKISFRIVDT 116

Query: 70  LLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKT 125
           L  + R  K  S   +   +   I ++L   SK  N + +    +P VI++VGVNG GKT
Sbjct: 117 LREEIRDGKLKSGAEIKAALKRCILELLT--SKGGNSELNLGFRKPAVIMIVGVNGGGKT 174

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDAAALAYE 184
           T +GKL+ +  + G+KV++AAGDTFR+AA DQL++WA+RT ++ V  ++  +   A+  +
Sbjct: 175 TSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAQPPAVLSQ 234

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K+ + +  DV++ DT+GRLH N  LM  +    +VL +  P AP+ +L VLD TTG N
Sbjct: 235 AVKRGKREGFDVVLCDTSGRLHTNYGLMEELVSCKKVLAKALPGAPNEILLVLDGTTGLN 294

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L+Q   F+ V G TG I+TK+DGTARGG ++ +V    IPV F+GVGEG+ DL+PF A+
Sbjct: 295 MLQQAREFNDVVGVTGFILTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQPFDAE 354

Query: 305 DFSAVI 310
            F   I
Sbjct: 355 AFVEAI 360


>gi|284045138|ref|YP_003395478.1| signal recognition particle-docking protein FtsY [Conexibacter
           woesei DSM 14684]
 gi|283949359|gb|ADB52103.1| signal recognition particle-docking protein FtsY [Conexibacter
           woesei DSM 14684]
          Length = 331

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/286 (40%), Positives = 174/286 (60%), Gaps = 7/286 (2%)

Query: 27  KLKEGITDIISS---RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-Q 82
           K +E +T  I++     LD+   E+LE+ LI +D+G     +IVE+L  +    D++  +
Sbjct: 43  KTREALTSEITATLFEDLDEETWEKLEEALIAADVGARTTAEIVEQLEQEADRGDLAGGE 102

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLK 141
           ++   ++EL+  +   + +P   D +  P V+LVVGVNG GKTT +GKL+  +  + G K
Sbjct: 103 QLTARLTELLADVAR-VGEP-RIDLTPSPTVLLVVGVNGTGKTTSVGKLAWHLRKELGQK 160

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+L A DTFR+AA++QL+ W+ R    FV     SD A++AYE       +  DV+I+DT
Sbjct: 161 VVLGAADTFRAAAVEQLEEWSRRADVRFVKGPPDSDPASVAYETVSTGVREGADVIIVDT 220

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH    LMA + K+ RV+ +  P APH  L  +DATTGQN LRQ ++F      +G+
Sbjct: 221 AGRLHTQDNLMAELAKVRRVITKQLPDAPHETLITVDATTGQNGLRQAKLFAEAVDVSGI 280

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           ++TK+DGTA+GG  + I    +IPV  +G+GE + DL PF   DF+
Sbjct: 281 VLTKLDGTAKGGIALAIARELEIPVKMIGIGEQLEDLRPFDPDDFA 326


>gi|296111747|ref|YP_003622129.1| signal recognition particle receptor FtsY [Leuconostoc kimchii
           IMSNU 11154]
 gi|295833279|gb|ADG41160.1| signal recognition particle receptor FtsY [Leuconostoc kimchii
           IMSNU 11154]
          Length = 454

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/277 (41%), Positives = 169/277 (61%), Gaps = 14/277 (5%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKML 96
           R +D+   E+LE+ L+ +D+G  +A KI +EL      ++V ++   +  DV ++I K +
Sbjct: 173 RSVDEDFFEDLEETLVGADVGFDMAIKISDEL-----REEVKLENAKHKEDVRDVIIKKM 227

Query: 97  MPLSKPFNWDFSHRPH-------VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           + + +    D     H       VIL+VGVNGVGKTT IGKLS K    G  V+LAA DT
Sbjct: 228 VDMYEADGVDEDATMHFNSNGTTVILLVGVNGVGKTTTIGKLSTKYQQQGKSVLLAAADT 287

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A  QL+ W  R     V  +  +D A++ +EA  +A+ ++ DVL +DTAGRL NN 
Sbjct: 288 FRAGATKQLQEWGQRAGVPVVSGKEKADPASVVFEAVTKARDEQFDVLFVDTAGRLQNNV 347

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + KM R+++R  P APH VL VLDATTGQNAL+Q ++F   +  +G+++TKMDGT
Sbjct: 348 NLMQELEKMKRIIQREIPGAPHEVLLVLDATTGQNALQQAKLFKDSSDVSGIVLTKMDGT 407

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A+GG +  I     +PV ++G GE  +DL  F  ++F
Sbjct: 408 AKGGIVFAIRNEMHLPVKWVGFGEKASDLREFKPEEF 444


>gi|261419393|ref|YP_003253075.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           Y412MC61]
 gi|319766208|ref|YP_004131709.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           Y412MC52]
 gi|261375850|gb|ACX78593.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           Y412MC61]
 gi|317111074|gb|ADU93566.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           Y412MC52]
          Length = 328

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/309 (41%), Positives = 185/309 (59%), Gaps = 23/309 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGIT-----------DIISS-RRLDDGVREELEDLLIRSDIGV 60
           W  K TK   + + K KEG++           D+I+  R++D+   EELE++LI +D+GV
Sbjct: 7   WKEKWTKQADAVTEKFKEGLSKTRNSLAGKVNDLIARYRKVDEEFFEELEEILIAADVGV 66

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP--------H 112
               ++V+EL  +   +++     + DV   I + L+ + +    D              
Sbjct: 67  TTVMELVDELKMEVKRRNIQDPAQMRDV---IAEKLVDIYRAGADDKELSALNIQEGGLT 123

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VIL VGVNGVGKTT IGKL+ K+   G  V+LAAGDTFR+ AI+QL+ W +R   D +  
Sbjct: 124 VILFVGVNGVGKTTTIGKLAHKLKSEGKSVLLAAGDTFRAGAIEQLEAWGERVGVDVIKQ 183

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             GSD AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV+ R  P APH 
Sbjct: 184 AAGSDPAAVMYDAIQAAKARGVDVLLCDTAGRLQNKVNLMKELEKVKRVISREIPGAPHE 243

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL VLDATTGQNA+ Q ++F      TG+++TK+DGTA+GG ++ I     IPV  +G+G
Sbjct: 244 VLLVLDATTGQNAMSQAKLFKEATDVTGIVLTKLDGTAKGGIVLAIRNEMAIPVKLVGLG 303

Query: 293 EGINDLEPF 301
           E ++DL+ F
Sbjct: 304 EKMDDLQVF 312


>gi|332638235|ref|ZP_08417098.1| signal recognition particle-docking protein FtsY [Weissella cibaria
           KACC 11862]
          Length = 406

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/275 (41%), Positives = 161/275 (58%), Gaps = 10/275 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHR 110
           LI +D+G   A ++ +EL   R    +   +   D+S +I   L+    S+  N D S  
Sbjct: 135 LIGADVGAQTALQLTDEL---RNEVKLQNAKSKADISRVIIDKLVEHYRSQGVNEDASMH 191

Query: 111 -----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
                P VIL VGVNGVGKTT IGK+S +    G +V+LAA DTFR+ A  QL+ W +R 
Sbjct: 192 FAPEGPTVILFVGVNGVGKTTTIGKMSARYKAEGKQVVLAAADTFRAGATQQLQAWGERN 251

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               V     +D A++ Y+  K A     D+L +DTAGRL NN  LM  + KM R++ R 
Sbjct: 252 GIPVVAGAANADPASVVYDGVKTAIETNADILFVDTAGRLQNNVNLMQELAKMKRIITRE 311

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P+ P  VL  LDATTGQNAL+Q  +F      TG+++TK+DGTA+GG ++PI     +P
Sbjct: 312 LPNEPQEVLLALDATTGQNALQQARLFKDSTDVTGIVLTKLDGTAKGGIILPIRNELHLP 371

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320
           V ++G+GE + DL+PF A DF+  + G L  G++K
Sbjct: 372 VKWVGLGEQVGDLQPFDADDFAKSLFGSLLIGDDK 406


>gi|257791123|ref|YP_003181729.1| signal recognition particle-docking protein FtsY [Eggerthella lenta
           DSM 2243]
 gi|317488147|ref|ZP_07946722.1| signal recognition particle-docking protein FtsY [Eggerthella sp.
           1_3_56FAA]
 gi|257475020|gb|ACV55340.1| signal recognition particle-docking protein FtsY [Eggerthella lenta
           DSM 2243]
 gi|316912775|gb|EFV34309.1| signal recognition particle-docking protein FtsY [Eggerthella sp.
           1_3_56FAA]
          Length = 306

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/312 (37%), Positives = 192/312 (61%), Gaps = 16/312 (5%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  ++++G   +  K KE +  ++     LD+   + LE+ LI +D+G A A +IVE 
Sbjct: 1   MGFFDRISEGLTRSRDKFKEQMNVLLDRGPDLDEEFWDGLEETLILADVGGAAAAEIVEG 60

Query: 70  LLTKRYAKDVSVQRVL---YDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKT 125
           L      +D + ++ L   Y V +L++  +         D    +P ++L VG+NG GKT
Sbjct: 61  L------RDQATRKALPDAYAVLDLLNDQIASTFTEGGEDVLGGQPALVLFVGINGTGKT 114

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL+K+ +DAG  V+L + DTFR+AAI+QL++WA+R + + V  E GSD A++ Y+ 
Sbjct: 115 TTVGKLAKEATDAGRTVILGSADTFRAAAIEQLEVWAERANVEVVTRERGSDPASVCYDT 174

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++A+++  D+++IDTAGRLH ++ LM  + K++ V+++      ++VL V DATTGQN 
Sbjct: 175 IERAESRGADLVLIDTAGRLHTSADLMRELEKVVNVVRKRSQLPVYTVL-VTDATTGQNG 233

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVA 303
           L Q   F       G+I+TK+DGTA+GG  I + V+H+  +PV  +GVGEG++DL  F A
Sbjct: 234 LSQAREFDRALDLDGVIVTKLDGTAKGG--IALAVSHELGLPVLKIGVGEGLDDLRDFDA 291

Query: 304 KDFSAVITGCLD 315
            DF+  + G  D
Sbjct: 292 HDFARALVGEFD 303


>gi|322516386|ref|ZP_08069311.1| cell division protein FtsY [Streptococcus vestibularis ATCC 49124]
 gi|322125119|gb|EFX96512.1| cell division protein FtsY [Streptococcus vestibularis ATCC 49124]
          Length = 434

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/319 (39%), Positives = 186/319 (58%), Gaps = 18/319 (5%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K  +E   + R L K     + +L E   +    RR+D+   EELE++LI SD+GV VA 
Sbjct: 125 KTETEQEKYNRTLKKTRTGFAARLNEFFANF---RRVDEEFFEELEEMLILSDVGVNVAT 181

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH--------VILV 116
           ++ E+L   RY   +   +   D+  LI + L+ +   +  D  ++ H        V+L 
Sbjct: 182 QLTEDL---RYEARLENVKKTEDLQRLIIEKLVDI---YEKDDIYKEHINFQDGLTVMLF 235

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     +
Sbjct: 236 VGVNGVGKTTSIGKLAHKYKQEGKKVMLIAADTFRAGAVAQLVEWGHRVDVPVVTGAEKA 295

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  
Sbjct: 296 DPASVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLA 355

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA+TGQNAL Q + F  +   TGL++TK+DG+A+GG ++ I     IPV  +G GE I+
Sbjct: 356 LDASTGQNALSQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKID 415

Query: 297 DLEPFVAKDF-SAVITGCL 314
           D+  F +++F   ++TG +
Sbjct: 416 DIGEFHSEEFMQGLLTGLV 434


>gi|319764120|ref|YP_004128057.1| signal recognition particle-docking protein ftsy [Alicycliphilus
           denitrificans BC]
 gi|317118681|gb|ADV01170.1| signal recognition particle-docking protein FtsY [Alicycliphilus
           denitrificans BC]
          Length = 374

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 182/299 (60%), Gaps = 7/299 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W+ +L  G   T       I  + +  +++D + EELED L+ +D GV   Q ++ +L  
Sbjct: 80  WMERLKSGLRKTG----GSIATVFTGTQINDALYEELEDALLMADTGVKATQHLLADLRR 135

Query: 73  K-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + + AK      V   +++ +  +L PL KP     +H+P VI+V GVNG GKTT IGKL
Sbjct: 136 RVKEAKATEPAAVKALLADALADLLRPLEKPLVIG-AHQPTVIMVAGVNGAGKTTSIGKL 194

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ ++D G  V+LAA DTFR+AA +QL +WA R + + +  E G D AA++++A    +A
Sbjct: 195 TRHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEIISQE-GGDPAAVSFDAVTAGRA 253

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL QV  
Sbjct: 254 RGKDVVLVDTAGRLPTQLHLMEELKKIKRVVTKADATAPHEVLLVIDGNTGQNALAQVRA 313

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           F      TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DLE F A++F+  +
Sbjct: 314 FDDALSLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFDAREFAQAL 372


>gi|330823605|ref|YP_004386908.1| signal recognition particle-docking protein FtsY [Alicycliphilus
           denitrificans K601]
 gi|329308977|gb|AEB83392.1| signal recognition particle-docking protein FtsY [Alicycliphilus
           denitrificans K601]
          Length = 374

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 182/299 (60%), Gaps = 7/299 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W+ +L  G   T       I  + +  +++D + EELED L+ +D GV   Q ++ +L  
Sbjct: 80  WMERLKSGLRKTG----GSIATVFTGTQINDALYEELEDALLMADTGVKATQHLLADLRR 135

Query: 73  K-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + + AK      V   +++ +  +L PL KP     +H+P VI+V GVNG GKTT IGKL
Sbjct: 136 RVKEAKATEPAAVKALLADALADLLRPLEKPLVIG-AHQPTVIMVAGVNGAGKTTSIGKL 194

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ ++D G  V+LAA DTFR+AA +QL +WA R + + +  E G D AA++++A    +A
Sbjct: 195 TRHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEIISQE-GGDPAAVSFDAVTAGRA 253

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL QV  
Sbjct: 254 RGKDVVLVDTAGRLPTQLHLMEELKKIKRVVTKADATAPHEVLLVIDGNTGQNALAQVRA 313

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           F      TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DLE F A++F+  +
Sbjct: 314 FDDALSLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFDAREFAQAL 372


>gi|325661269|ref|ZP_08149896.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325472776|gb|EGC75987.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 309

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/300 (42%), Positives = 179/300 (59%), Gaps = 4/300 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   + ++L  G A T   +  GI  I +    +D+   EELE++LI  D+G+    KI+
Sbjct: 3   EKKGFFKRLVSGLAKTRDNIVSGIDSIFNGFSSIDEDFYEELEEILIMGDLGIHATMKII 62

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTT 126
           E+L  K   K+  ++        LI  +   +S     ++F +R  V+LV+GVNGVGKTT
Sbjct: 63  EDLKAK--VKENHIKEPAECKQLLIDSIKEQMSIGDTAYEFENRTSVVLVIGVNGVGKTT 120

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL+ K+ + G KV+LAA DTFR+AA +QL  WA R  A  +  + G+D AA+ Y+A 
Sbjct: 121 TVGKLAGKLREEGKKVVLAAADTFRAAAGEQLTEWARRADAYMIGGQEGADPAAIVYDAV 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+K DVL+ DTAGRLHN   LM  + K+ R++ R  P A    L VLD TTGQNAL
Sbjct: 181 QAAKARKADVLLCDTAGRLHNKKNLMEELKKINRIIDREFPEAYRETLVVLDGTTGQNAL 240

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F   A  TG+++TK+DGTA+GG  + I     IPV ++GVGE I DL+ F   +F
Sbjct: 241 AQAREFKEAADITGIVLTKLDGTAKGGIAVAIQSELGIPVKYIGVGEHIEDLQKFDPDEF 300


>gi|255306207|ref|ZP_05350379.1| putative signal recognition particle [Clostridium difficile ATCC
           43255]
          Length = 426

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/258 (44%), Positives = 167/258 (64%), Gaps = 3/258 (1%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+GV     I+E L  K   K ++   +V  ++  ++  +L   ++    D    P +I
Sbjct: 170 ADVGVNTTMDIIERLRDKIKQKGITEPIKVREELKSIVEDILT--NENSTLDIEPAPCII 227

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNGVGKTT IGKL+ +    G KV+LAA DTFR+AA +QL+IWA+RT+ D +  + 
Sbjct: 228 LMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQE 287

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D  A+ ++A K A+A+K DVLI DTAGRLHN + LM  +GK+ +++ R  P A   VL
Sbjct: 288 GADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVL 347

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DATTGQNA+ Q + F  VA  TG+++TK+DGTA+GG ++ +     +PV  +GVGE 
Sbjct: 348 LVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGES 407

Query: 295 INDLEPFVAKDFSAVITG 312
           + DL+ F AK FS  + G
Sbjct: 408 VEDLQDFNAKSFSDALFG 425


>gi|255100267|ref|ZP_05329244.1| putative signal recognition particle [Clostridium difficile
           QCD-63q42]
          Length = 426

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/258 (44%), Positives = 167/258 (64%), Gaps = 3/258 (1%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+GV     I+E L  K   K ++   +V  ++  ++  +L   ++    D    P +I
Sbjct: 170 ADVGVNTTMDIIERLRDKIKQKGITEPIKVREELKSIVEDILT--NENSTLDIEPAPCII 227

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNGVGKTT IGKL+ +    G KV+LAA DTFR+AA +QL+IWA+RT+ D +  + 
Sbjct: 228 LMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQE 287

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D  A+ ++A K A+A+K DVLI DTAGRLHN + LM  +GK+ +++ R  P A   VL
Sbjct: 288 GADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVL 347

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DATTGQNA+ Q + F  VA  TG+++TK+DGTA+GG ++ +     +PV  +GVGE 
Sbjct: 348 LVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGES 407

Query: 295 INDLEPFVAKDFSAVITG 312
           + DL+ F AK FS  + G
Sbjct: 408 VEDLQDFNAKSFSDALFG 425


>gi|126698847|ref|YP_001087744.1| putative signal recognition particle [Clostridium difficile 630]
 gi|115250284|emb|CAJ68106.1| signal recognition particle receptor [Clostridium difficile]
          Length = 426

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/258 (44%), Positives = 167/258 (64%), Gaps = 3/258 (1%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+GV     I+E L  K   K ++   +V  ++  ++  +L   ++    D    P +I
Sbjct: 170 ADVGVNTTMDIIERLRDKIKQKGITEPIKVREELKSIVEDILT--NENSTLDIEPAPCII 227

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNGVGKTT IGKL+ +    G KV+LAA DTFR+AA +QL+IWA+RT+ D +  + 
Sbjct: 228 LMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQE 287

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D  A+ ++A K A+A+K DVLI DTAGRLHN + LM  +GK+ +++ R  P A   VL
Sbjct: 288 GADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVL 347

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DATTGQNA+ Q + F  VA  TG+++TK+DGTA+GG ++ +     +PV  +GVGE 
Sbjct: 348 LVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGES 407

Query: 295 INDLEPFVAKDFSAVITG 312
           + DL+ F AK FS  + G
Sbjct: 408 VEDLQDFNAKSFSDALFG 425


>gi|228477265|ref|ZP_04061903.1| cell division protein FtsY [Streptococcus salivarius SK126]
 gi|228251284|gb|EEK10455.1| cell division protein FtsY [Streptococcus salivarius SK126]
          Length = 465

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/316 (39%), Positives = 185/316 (58%), Gaps = 12/316 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K  +E   + R L K     + +L E   +    RR+D+   EELE++LI SD+GV VA 
Sbjct: 156 KTETEQEKYNRTLKKTRTGFAARLNEFFANF---RRVDEEFFEELEEMLILSDVGVNVAT 212

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGV 119
           ++ E+L   RY   +   +   D+  LI + L+ + +  +      +F     V+L VGV
Sbjct: 213 QLTEDL---RYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYKEQINFQDGLTVMLFVGV 269

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     +D A
Sbjct: 270 NGVGKTTSIGKLAHKYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGAEKADPA 329

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA
Sbjct: 330 SVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLALDA 389

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TGL++TK+DG+A+GG ++ I     IPV  +G GE I+D+ 
Sbjct: 390 STGQNALSQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKIDDIG 449

Query: 300 PFVAKDF-SAVITGCL 314
            F +++F   ++TG +
Sbjct: 450 EFHSEEFMQGLLTGLV 465


>gi|330717912|ref|ZP_08312512.1| signal recognition particle-docking protein FtsY [Leuconostoc
           fallax KCTC 3537]
          Length = 354

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/276 (41%), Positives = 167/276 (60%), Gaps = 11/276 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R +D+   ++LE+ LI SD+G  +  +I +EL  +   K+   +    DVS++I K L+ 
Sbjct: 71  RTVDEDFFDDLEETLIGSDVGFDMVIRISDELREEVKLKNAKRKE---DVSDVIIKKLVD 127

Query: 99  L--------SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +            ++  + +P +I+ VGVNGVGKTT IGKL+ +   AG +V+LAA DTF
Sbjct: 128 IYEEEGSGEDNQMHFAPTGQPTIIMFVGVNGVGKTTTIGKLASQYQKAGKRVLLAAADTF 187

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+ A  QL+ W        V  +  SD A++ +EA K+A+ +  DVL IDTAGRL NN  
Sbjct: 188 RAGATKQLQEWGAIAQVPVVAGKDKSDPASVVFEAVKRARDEAYDVLFIDTAGRLQNNFN 247

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + KM RV++R  P APH VL VLDATTGQNA++Q ++F      TG+++TKMDGTA
Sbjct: 248 LMQELEKMKRVVQREIPDAPHEVLLVLDATTGQNAIQQAKLFKDSTDVTGIVLTKMDGTA 307

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +GG +  I     +PV ++G GE   DL  F  ++F
Sbjct: 308 KGGIVFAIRSEMHLPVKWIGFGEKATDLRVFKPEEF 343


>gi|312131071|ref|YP_003998411.1| signal recognition particle-docking protein ftsy [Leadbetterella
           byssophila DSM 17132]
 gi|311907617|gb|ADQ18058.1| signal recognition particle-docking protein FtsY [Leadbetterella
           byssophila DSM 17132]
          Length = 318

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/256 (42%), Positives = 159/256 (62%), Gaps = 6/256 (2%)

Query: 52  LLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYD-VSELIHKM-LMPLSKPFNW 105
           +LI SD+GV    KI+  +  +    +Y     + R+L + V+ L+ +     ++  F  
Sbjct: 51  ILISSDVGVDTTVKIIRRIEARVARDKYTSTSELDRILREEVAALLQENNSQDVTNSFET 110

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               +P+V++VVGVNGVGKTT IGKL+   S  G KV+L A DTFR+AA+DQLK+W  R 
Sbjct: 111 QNLPKPYVLMVVGVNGVGKTTTIGKLAHNFSKNGKKVVLGAADTFRAAAVDQLKLWGQRV 170

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             + +   + +D +++AY+A K+      DV+IIDTAGRLH    LM  +GK+ RV++++
Sbjct: 171 GVEVIDHGMNTDPSSVAYDAVKKGVEVGADVIIIDTAGRLHTKVNLMNELGKIKRVMQKV 230

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P APH V+ VLD +TGQNA+ Q   F  V     L +TK+DGTA+GG +I I    KIP
Sbjct: 231 LPEAPHEVMLVLDGSTGQNAVIQAREFTRVTDVNSLAITKLDGTAKGGVVIGISDEFKIP 290

Query: 286 VYFLGVGEGINDLEPF 301
           V ++GVGE + DL+ F
Sbjct: 291 VKYIGVGEKMEDLQVF 306


>gi|254974795|ref|ZP_05271267.1| putative signal recognition particle [Clostridium difficile
           QCD-66c26]
 gi|255092183|ref|ZP_05321661.1| putative signal recognition particle [Clostridium difficile CIP
           107932]
 gi|255313922|ref|ZP_05355505.1| putative signal recognition particle [Clostridium difficile
           QCD-76w55]
 gi|255516601|ref|ZP_05384277.1| putative signal recognition particle [Clostridium difficile
           QCD-97b34]
 gi|255649701|ref|ZP_05396603.1| putative signal recognition particle [Clostridium difficile
           QCD-37x79]
 gi|260682857|ref|YP_003214142.1| putative signal recognition particle [Clostridium difficile CD196]
 gi|260686455|ref|YP_003217588.1| putative signal recognition particle [Clostridium difficile R20291]
 gi|260209020|emb|CBA62114.1| putative signal recognition particle [Clostridium difficile CD196]
 gi|260212471|emb|CBE03377.1| putative signal recognition particle [Clostridium difficile R20291]
          Length = 426

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/258 (44%), Positives = 167/258 (64%), Gaps = 3/258 (1%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+GV     I+E L  K   K ++   +V  ++  ++  +L   ++    D    P +I
Sbjct: 170 ADVGVNTTMDIIERLRDKIKQKGITEPIKVREELKSIVEDILT--NENSTLDIEPAPCII 227

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNGVGKTT IGKL+ +    G KV+LAA DTFR+AA +QL+IWA+RT+ D +  + 
Sbjct: 228 LMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQE 287

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D  A+ ++A K A+A+K DVLI DTAGRLHN + LM  +GK+ +++ R  P A   VL
Sbjct: 288 GADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVL 347

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DATTGQNA+ Q + F  VA  TG+++TK+DGTA+GG ++ +     +PV  +GVGE 
Sbjct: 348 LVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGES 407

Query: 295 INDLEPFVAKDFSAVITG 312
           + DL+ F AK FS  + G
Sbjct: 408 VEDLQDFNAKSFSDALFG 425


>gi|91787174|ref|YP_548126.1| signal recognition particle-docking protein FtsY [Polaromonas sp.
           JS666]
 gi|91696399|gb|ABE43228.1| signal recognition particle-docking protein FtsY [Polaromonas sp.
           JS666]
          Length = 379

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/322 (40%), Positives = 191/322 (59%), Gaps = 28/322 (8%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           VA E   W+ KL  G   T       I+ + +  R+DD + E+LE  L+ +D GV   + 
Sbjct: 67  VAPERERWLAKLQAGLRKTG----SSISTVFTGSRIDDELYEDLETALLMADTGVKATEY 122

Query: 66  IVEELLTKRYAKD------VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           ++ E+  KR  KD      V+V+  L D    + ++L PL +       ++P VI+V GV
Sbjct: 123 LLAEV--KRRVKDGGMTHPVAVKNALVDA---LAQLLKPLEQALVIG-QYQPTVIMVTGV 176

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL++ ++  G  V+LAA DTFR+AA +QL IWADR + + + S+ G D A
Sbjct: 177 NGAGKTTSIGKLTRHLAAEGASVLLAAADTFRAAAREQLSIWADRNTVEII-SQAGGDPA 235

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A++++A    +A+  DV+++DTAGRL     LM  + K+ RV+++ D  APH VL V+D 
Sbjct: 236 AVSFDAVTAGKARGKDVVLVDTAGRLPTQLHLMEELRKIKRVVQKADATAPHEVLLVIDG 295

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK-----------IPVYF 288
            TGQNAL QV+ F      TGL++TK+DGTA+GG L  I +  +           +PVYF
Sbjct: 296 NTGQNALSQVKAFDEALQLTGLVVTKLDGTAKGGVLAAIALWARERQEVAPDLRPVPVYF 355

Query: 289 LGVGEGINDLEPFVAKDFSAVI 310
           +GVGE + DLE F A++F+  +
Sbjct: 356 IGVGEKLEDLETFSAREFAQAL 377


>gi|94986767|ref|YP_594700.1| Signal renition particle GTPase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731016|emb|CAJ54379.1| Signal renition particle GTPase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 435

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/308 (39%), Positives = 187/308 (60%), Gaps = 11/308 (3%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
           SE    + K+  G A T   L +G+  + S  ++L +   +ELE+L I SD+GV  A+ +
Sbjct: 131 SEQNRLLTKIHTGLAKTREHLSQGLKTVFSHHKKLSNDFWDELEELFILSDMGVETAEML 190

Query: 67  VEELLTKRYAKDVSVQR----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              L  +    ++S+      +L +  E+I K + P     N      P VIL++GVNGV
Sbjct: 191 TSRLKIRATKANISIPEELSPLLANELEIILK-ISPRVLAIN-----PPEVILLIGVNGV 244

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I KL+ +M   G KV+LAA DTFR+AAI+QL++WA R    F     G+D AA+A
Sbjct: 245 GKTTTIAKLAYRMHLQGKKVLLAAADTFRAAAIEQLEVWAQRIGIVFYTKGTGADPAAVA 304

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           +EA + A  K+ DV++IDTAGRLH  + LM  + K+  V+ +  P APH  + ++DATTG
Sbjct: 305 WEAVEHAIQKQFDVVLIDTAGRLHTKTNLMDELSKIRNVIAKKHPGAPHRTILIIDATTG 364

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL+Q ++F    G   +I+TK+DGTA+GG  I + + + IP+ ++G+GE + DL+PF 
Sbjct: 365 QNALQQTKVFKESTGIDEIIVTKLDGTAKGGVAIAVSLQYGIPITYVGLGEKMEDLQPFN 424

Query: 303 AKDFSAVI 310
            + F+  +
Sbjct: 425 GEKFAKAL 432


>gi|69246108|ref|ZP_00603814.1| Cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium DO]
 gi|227550771|ref|ZP_03980820.1| signal recognition particle docking protein FtsY [Enterococcus
           faecium TX1330]
 gi|257878773|ref|ZP_05658426.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,230,933]
 gi|257881413|ref|ZP_05661066.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,502]
 gi|257885681|ref|ZP_05665334.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,501]
 gi|257887972|ref|ZP_05667625.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,141,733]
 gi|257890631|ref|ZP_05670284.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,410]
 gi|257893225|ref|ZP_05672878.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,408]
 gi|257896410|ref|ZP_05676063.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium Com12]
 gi|257899384|ref|ZP_05679037.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium Com15]
 gi|258615161|ref|ZP_05712931.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium DO]
 gi|293379495|ref|ZP_06625639.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium PC4.1]
 gi|293562994|ref|ZP_06677461.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1162]
 gi|293567877|ref|ZP_06679218.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1071]
 gi|293570733|ref|ZP_06681783.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E980]
 gi|294621995|ref|ZP_06701139.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium U0317]
 gi|314937657|ref|ZP_07844983.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133a04]
 gi|314942844|ref|ZP_07849657.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133C]
 gi|314948020|ref|ZP_07851424.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0082]
 gi|314950938|ref|ZP_07854007.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133A]
 gi|314991414|ref|ZP_07856891.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133B]
 gi|314995065|ref|ZP_07860185.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133a01]
 gi|68195403|gb|EAN09850.1| Cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium DO]
 gi|227180089|gb|EEI61061.1| signal recognition particle docking protein FtsY [Enterococcus
           faecium TX1330]
 gi|257813001|gb|EEV41759.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,230,933]
 gi|257817071|gb|EEV44399.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,502]
 gi|257821537|gb|EEV48667.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,501]
 gi|257824026|gb|EEV50958.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,141,733]
 gi|257826991|gb|EEV53617.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,410]
 gi|257829604|gb|EEV56211.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,408]
 gi|257832975|gb|EEV59396.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium Com12]
 gi|257837296|gb|EEV62370.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium Com15]
 gi|291589462|gb|EFF21269.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1071]
 gi|291598422|gb|EFF29495.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium U0317]
 gi|291605120|gb|EFF34587.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1162]
 gi|291609205|gb|EFF38477.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E980]
 gi|292642018|gb|EFF60184.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium PC4.1]
 gi|313590791|gb|EFR69636.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133a01]
 gi|313593894|gb|EFR72739.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133B]
 gi|313596947|gb|EFR75792.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133A]
 gi|313598316|gb|EFR77161.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133C]
 gi|313643034|gb|EFS07614.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133a04]
 gi|313645618|gb|EFS10198.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0082]
          Length = 332

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/194 (50%), Positives = 133/194 (68%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VIL VGVNGVGKTT IGKL+ +  + G KV++AA DTFR+ AIDQL +W +R   + V  
Sbjct: 127 VILFVGVNGVGKTTSIGKLAHQFKNEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRG 186

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G D AA+ ++A ++A+ ++ DVL++DTAGRL N   LM  + K+ RV++R  P AP  
Sbjct: 187 NAGGDPAAVVFDALERAKTEQADVLLVDTAGRLQNKVNLMNELEKIKRVIQRELPEAPQE 246

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L VLDATTGQNA+ Q + F      TGL++TK+DGTA+GG ++ I     +PV  +G+G
Sbjct: 247 TLLVLDATTGQNAMVQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELHLPVKLVGLG 306

Query: 293 EGINDLEPFVAKDF 306
           EGI+DLEPF   DF
Sbjct: 307 EGIDDLEPFDPNDF 320


>gi|115442343|ref|NP_001045451.1| Os01g0958100 [Oryza sativa Japonica Group]
 gi|113534982|dbj|BAF07365.1| Os01g0958100 [Oryza sativa Japonica Group]
          Length = 347

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVA 63
           +  ++ S + KL  GF+ T   L   + ++++   L D  R  +ELE+ L+ SD G  ++
Sbjct: 37  IQEKAKSDVEKLFSGFSKTRESLSV-VDELLTYWNLADTDRVLDELEEALLVSDFGPKIS 95

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFS---HRPHVILVVG 118
            +IV+ L  +   +D  ++    ++ E + + ++ L  SK  N +      +P VI++VG
Sbjct: 96  FRIVDTL--REEIRDGKLKSG-AEIKEALKRCILELLTSKGGNPELQLGFRKPAVIMIVG 152

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSD 177
           VNG GKTT +GKL+ +  + G+KV++AAGDTFR+AA DQL++WA+RT ++ V  ++  + 
Sbjct: 153 VNGGGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAK 212

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++  +A K+ + +  D+++ DT+GRLH N  LM  +    +V+ +  P AP+ +L VL
Sbjct: 213 PASVLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVL 272

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D TTG N L+Q   F+ V G TG ++TK+DGTARGG ++ +V    IPV F+GVGEG+ D
Sbjct: 273 DGTTGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMED 332

Query: 298 LEPFVAKDFSAVI 310
           L+PF A+ F   I
Sbjct: 333 LQPFDAEAFVEAI 345


>gi|297530630|ref|YP_003671905.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           C56-T3]
 gi|297253882|gb|ADI27328.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           C56-T3]
          Length = 328

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/312 (41%), Positives = 187/312 (59%), Gaps = 29/312 (9%)

Query: 13  WIRKLTKGFASTSLKLKEGIT-----------DIISS-RRLDDGVREELEDLLIRSDIGV 60
           W  K TK   + + K KEG++           D+I+  R++D+   EELE++LI +D+GV
Sbjct: 7   WKEKWTKQADAVTEKFKEGLSKTRNSLAGKVNDLIARYRKVDEEFFEELEEILIVADVGV 66

Query: 61  AVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP------ 111
               ++V+EL   + +R  +D +  R      ++I + L+ + +    D           
Sbjct: 67  TTVMELVDELKMEVKRRNIQDPAQMR------DVIAEKLVDIYRAGADDKELSALNIQEG 120

Query: 112 --HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              VIL VGVNGVGKTT IGKL+ K+   G  V+LAAGDTFR+ AI+QL+ W +R   D 
Sbjct: 121 GLTVILFVGVNGVGKTTTIGKLAHKLKSEGKSVLLAAGDTFRAGAIEQLEAWGERVGVDV 180

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    GSD AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV+ R  P A
Sbjct: 181 IKQAAGSDPAAVMYDAIQAAKARGVDVLLCDTAGRLQNKVNLMKELEKVKRVISREVPGA 240

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL VLDATTGQNA+ Q ++F      TG+++TK+DGTA+GG ++ I     IPV  +
Sbjct: 241 PHEVLLVLDATTGQNAMSQAKLFKEATDVTGIVLTKLDGTAKGGIVLAIRNEMAIPVKLV 300

Query: 290 GVGEGINDLEPF 301
           G+GE ++DL+ F
Sbjct: 301 GLGEKMDDLQVF 312


>gi|253578966|ref|ZP_04856237.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849909|gb|EES77868.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 316

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/306 (41%), Positives = 191/306 (62%), Gaps = 10/306 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +A E   + ++L  G A T   +  G   I S    +D+   EELE++LI  DIG+    
Sbjct: 1   MAEEKKGFFKRLVSGLAKTRDNIVAGFDSIFSGFSSIDEDFYEELEEILIMGDIGINATT 60

Query: 65  KIVEEL---LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            I+E L   +++R+ K+ +  +++L  ++E+  +M +  ++   ++F +R  V+LV+GVN
Sbjct: 61  SIIENLKKEVSERHIKEPMECKQLL--INEIKDQMRVDSTE---YEFENRRSVVLVIGVN 115

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT +GKL+ K+ D G KV+LAA DTFR+AA +QL  WA+R   + +  + G+D A+
Sbjct: 116 GVGKTTSVGKLAGKLKDQGKKVILAAADTFRAAAGEQLTEWANRAGVEIIGGQAGADPAS 175

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A   A+A+  DVL+ DTAGRLHN   LM  + K+ R+L+R  P A    L VLD T
Sbjct: 176 VIYDAVAAAKARNADVLLCDTAGRLHNKKNLMEELRKIYRILEREYPDAYLETLVVLDGT 235

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q   F  VA  +G+I+TK+DGTA+GG  + I     IPV ++GVGE I+DL+ 
Sbjct: 236 TGQNALAQARQFAEVANVSGIILTKLDGTAKGGIAVAIQSELDIPVKYIGVGESIDDLQK 295

Query: 301 FVAKDF 306
           F A  F
Sbjct: 296 FDADAF 301


>gi|148241110|ref|YP_001226267.1| Signal recognition particle GTPase, FtsY [Synechococcus sp. RCC307]
 gi|147849420|emb|CAK26914.1| Signal recognition particle GTPase, FtsY [Synechococcus sp. RCC307]
          Length = 490

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 111/315 (35%), Positives = 180/315 (57%), Gaps = 20/315 (6%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ E + W+ +L +G   T       + + +    L +   +++E LL+++D+GV    
Sbjct: 175 QISLEEIDWLGRLRRGMEKTRQNFVTTLLENLGDDPLSEASLDDIETLLLQADVGVEATD 234

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------------SKPFNWDFSHRPH 112
           ++++ LL +R      +   + D SE I+ +   L            + P       R +
Sbjct: 235 QVLD-LLRRR------MNEAVVDGSEAINLLKDQLRNLLDAPIKSMGANPLLAPQKGRLN 287

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           + L+VGVNGVGKTT +GKL+     +G   ++AAGDTFR+AA+ QL++WADR+    V +
Sbjct: 288 IWLMVGVNGVGKTTTLGKLANLAVRSGYSCLVAAGDTFRAAAVQQLQVWADRSGVPLVAN 347

Query: 173 -EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
               +D AA+ ++A   AQ+K +++L++DTAGRL   + LM  + K+ R++ RL P A  
Sbjct: 348 PSANADPAAVVFDAIGAAQSKDIELLLVDTAGRLQTKNNLMEELAKVRRIVDRLAPDAAV 407

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L VLDA+ GQN LRQ   F   AG TG+++TK+DGTARGG    +     +P+ F+G 
Sbjct: 408 ESLLVLDASQGQNGLRQAMAFAKAAGLTGVVLTKLDGTARGGVAFAVASESNLPIRFIGA 467

Query: 292 GEGINDLEPFVAKDF 306
           GEG+ DL PF + +F
Sbjct: 468 GEGLRDLRPFNSFEF 482


>gi|331084976|ref|ZP_08334063.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330408676|gb|EGG88141.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 309

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/300 (41%), Positives = 179/300 (59%), Gaps = 4/300 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   + ++L  G A T   +  GI  I +    +D+   EELE++LI  D+G+    +I+
Sbjct: 3   EKKGFFKRLVSGLAKTRDNIVSGIDSIFNGFSSIDEDFYEELEEILIMGDLGIHATMQII 62

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTT 126
           E+L  K   K+  ++        LI  +   +S     ++F +R  V+LV+GVNGVGKTT
Sbjct: 63  EDLKAK--VKENHIKEPAECKQLLIDSIKEQMSIGDTAYEFENRTSVVLVIGVNGVGKTT 120

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL+ K+ + G KV+LAA DTFR+AA +QL  WA R  A  +  + G+D AA+ Y+A 
Sbjct: 121 TVGKLAGKLREEGKKVVLAAADTFRAAAGEQLTEWARRADAYMIGGQEGADPAAIVYDAV 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+K DVL+ DTAGRLHN   LM  + K+ R++ R  P A    L VLD TTGQNAL
Sbjct: 181 QAAKARKADVLLCDTAGRLHNKKNLMEELKKINRIIDREFPEAYRETLVVLDGTTGQNAL 240

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F   A  TG+++TK+DGTA+GG  + I     IPV ++GVGE I DL+ F   +F
Sbjct: 241 AQAREFKEAADITGIVLTKLDGTAKGGIAVAIQAELGIPVKYIGVGEHIEDLQKFDPDEF 300


>gi|242059977|ref|XP_002459134.1| hypothetical protein SORBIDRAFT_03g046390 [Sorghum bicolor]
 gi|241931109|gb|EES04254.1| hypothetical protein SORBIDRAFT_03g046390 [Sorghum bicolor]
          Length = 366

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 188/306 (61%), Gaps = 10/306 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVAQKIVEE 69
           S + KL  GF+ T   L   + ++++   L D  R  ++LE+ L+ SD G  ++ +IV+ 
Sbjct: 62  SDVEKLFSGFSKTRENLSV-VDELLTYWNLADTDRVLDDLEEALLVSDFGPKISFRIVDT 120

Query: 70  LLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKT 125
           L  + R  K  S   +   +   I ++L   SK  N + +    +P VI++VGVNG GKT
Sbjct: 121 LREEIRDGKLKSGAEIKAALKRCILELLT--SKGGNSELNLGFRKPAVIMIVGVNGGGKT 178

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDAAALAYE 184
           T +GKL+ +  + G+KV++AAGDTFR+AA DQL++WA+RT ++ V  ++  +   A+  +
Sbjct: 179 TSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAQPPAVLSQ 238

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K+ + +  DV++ DT+GRLH N  LM  +    +VL +  P AP+ +L VLD TTG N
Sbjct: 239 AVKRGKREGFDVVLCDTSGRLHTNYGLMEELVSCKKVLVKALPGAPNEILLVLDGTTGLN 298

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L+Q   F+ V G TG I+TK+DGTARGG ++ +V    IPV F+GVGEG+ DL+PF A+
Sbjct: 299 MLQQAREFNDVVGVTGFILTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQPFDAE 358

Query: 305 DFSAVI 310
            F   I
Sbjct: 359 AFVEAI 364


>gi|254446631|ref|ZP_05060107.1| signal recognition particle-docking protein FtsY [Verrucomicrobiae
           bacterium DG1235]
 gi|198260939|gb|EDY85247.1| signal recognition particle-docking protein FtsY [Verrucomicrobiae
           bacterium DG1235]
          Length = 308

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 179/303 (59%), Gaps = 2/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LS  +K  +G A ++  + E    I   ++LD    EELE+ L  SD G    ++I+EE 
Sbjct: 2   LSIFKKFKEGLAKSAKSIAEKTGGIFGRKKLDASSIEELEEALFASDFGYETTEEIIEET 61

Query: 71  LTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               Y+KD +++ + +  +   + + ++  S+        +P VI ++GVNG GKTT   
Sbjct: 62  QAA-YSKDKNLRGQDVAGIGASVLRRVLDGSEGRIQFLEDKPTVICLIGVNGSGKTTTTA 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL  +    G   MLAA DTFR+AAI+QLK W+ R   D +  + G+D+AA+A++A++ A
Sbjct: 121 KLGYQYKQDGRNPMLAACDTFRAAAIEQLKEWSSRLGLDIIAGQHGADSAAVAFDAYQAA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D LI+DTAGRLH  S LM  + K+ RVL++ D  APH  L V+D + G N++ Q 
Sbjct: 181 KARGHDTLIVDTAGRLHTKSNLMDELAKIRRVLQKHDETAPHYSLLVVDGSLGSNSIEQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F+   G  GL++TK+DGT+RGG L+ I    K+P++FLG GE   DL+ +   ++   
Sbjct: 241 RVFNEKFGLDGLVVTKLDGTSRGGALVGIYRELKLPIFFLGFGEKPEDLQEYRVDNYVDA 300

Query: 310 ITG 312
           I G
Sbjct: 301 IFG 303


>gi|120612515|ref|YP_972193.1| signal recognition particle-docking protein FtsY [Acidovorax
           citrulli AAC00-1]
 gi|120590979|gb|ABM34419.1| signal recognition particle-docking protein FtsY [Acidovorax
           citrulli AAC00-1]
          Length = 305

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/308 (39%), Positives = 183/308 (59%), Gaps = 7/308 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+   E   W+ +L  G   T       I  + +  ++ D + +ELE+ L+ +D GV   
Sbjct: 2   QEAGQERKGWLDRLKNGLRKTGTS----IATVFTGTQISDALYDELEEALLMADTGVKAT 57

Query: 64  QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + ++++L  + + +K      V   +++ +  +L PL KP      H P VI+V GVNG 
Sbjct: 58  EHLLQDLRRRVKESKATDPAAVKGLLADALADLLRPLEKPLEIG-RHTPTVIMVAGVNGA 116

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++ ++  G  V+LAA DTFR+AA +QL +WADR + + V  E G D AA++
Sbjct: 117 GKTTSIGKLTRHLATEGAAVLLAAADTFRAAAREQLGVWADRNTVEIVSQE-GGDPAAVS 175

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A    +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TG
Sbjct: 176 FDAVSAGKARGKDVVLVDTAGRLPTQLHLMQELQKIKRVITKADGTAPHEVLLVIDGNTG 235

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QV  F      TGL++TK+DGTA+GG L  I     IPVYF+GVGE + DLE F 
Sbjct: 236 QNALAQVRAFDDALQLTGLVVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKLEDLETFS 295

Query: 303 AKDFSAVI 310
           A++F+  +
Sbjct: 296 AREFAQAL 303


>gi|297565941|ref|YP_003684913.1| signal recognition particle-docking protein FtsY [Meiothermus
           silvanus DSM 9946]
 gi|296850390|gb|ADH63405.1| signal recognition particle-docking protein FtsY [Meiothermus
           silvanus DSM 9946]
          Length = 306

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 122/310 (39%), Positives = 178/310 (57%), Gaps = 12/310 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +SW+++L +G + T    +E I   +   R  + V EELE  LI +D+GV   Q+++EE+
Sbjct: 1   MSWLQRLREGLSKT----RENIAKSVPWNRDPEEVLEELEYALISADVGVEATQEVIEEV 56

Query: 71  LT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP------HVILVVGVNGV 122
               K+  ++   Q ++  +   + +  +     FN     +        VIL+VGVNGV
Sbjct: 57  RASGKKDLREALKQALVVQLEPDLLRAKLRKVGLFNRGNIQKTTIEPAGQVILMVGVNGV 116

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I KL +     G KVM  AGDTFR+A   QL IW +R     +    GSD AALA
Sbjct: 117 GKTTTIAKLGQYYQSRGKKVMFCAGDTFRAAGGAQLGIWGERIGVPVIQGPEGSDPAALA 176

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A    +A+ +D+L++DTAGRLH    LM  + K+ R + + DP  P  V  VLDA TG
Sbjct: 177 YDAAMARKARGMDLLLVDTAGRLHTKHNLMEELVKVKRSIAKADPGEPGEVWLVLDAVTG 236

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN L Q + F+   G TG+++TK+DGTA+GG L+PIV    +P+ F+G+GE   DL+PF 
Sbjct: 237 QNGLEQAKKFNEAVGLTGVVVTKLDGTAKGGVLVPIVRELGVPIKFIGIGEAATDLQPFD 296

Query: 303 AKDFSAVITG 312
           A +F   + G
Sbjct: 297 AGEFVEALLG 306


>gi|295397859|ref|ZP_06807922.1| cell division protein FtsY [Aerococcus viridans ATCC 11563]
 gi|294973904|gb|EFG49668.1| cell division protein FtsY [Aerococcus viridans ATCC 11563]
          Length = 341

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/321 (38%), Positives = 184/321 (57%), Gaps = 26/321 (8%)

Query: 3   NQKVASESLSW----IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSD 57
            Q+  SES S       K  KG   T     + + ++ +  R++DD   ++LE+  I SD
Sbjct: 19  EQQRQSESPSQDQIVFEKYDKGVEKTRRSFSDRMNELFAGFRQVDDEFFDDLEETFISSD 78

Query: 58  IG----VAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           +G    +A++  + EE+     ++    KDV +++++    E+  K   P     N + +
Sbjct: 79  VGFDMTLALSDAVREEVQRRGAISGEQVKDVIIEKMV----EIYDKGGEP-----NVEIN 129

Query: 109 HRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             P    V+L VGVNGVGKTT IGK++ ++   G KV+LAAGDTFR+ AI+QL+ WA R 
Sbjct: 130 ENPDGPTVVLFVGVNGVGKTTTIGKMAYQLKQDGKKVLLAAGDTFRAGAIEQLEEWARRI 189

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               V  +   D A++A++A K A+    D L++DTAGRL     LM  + KM R+L R 
Sbjct: 190 DVPIVTGKAQGDPASVAFDAAKTAREGGYDYLLVDTAGRLQTKINLMNELDKMKRILTRE 249

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P +PH +L VLDATTGQNAL Q + F       G+++TK+DGTA+GG +  I     IP
Sbjct: 250 LPGSPHEILLVLDATTGQNALVQAKEFDKTVDIDGIVLTKLDGTAKGGVIFAIRYEMDIP 309

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           V F+G+GE ++DL+ F A+ F
Sbjct: 310 VKFIGLGEKVDDLQVFDAEKF 330


>gi|227872401|ref|ZP_03990748.1| signal recognition particle-docking protein FtsY [Oribacterium
           sinus F0268]
 gi|227841761|gb|EEJ52044.1| signal recognition particle-docking protein FtsY [Oribacterium
           sinus F0268]
          Length = 291

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 109/278 (39%), Positives = 167/278 (60%), Gaps = 6/278 (2%)

Query: 32  ITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           + +I  S  + D+   EELE+ +I SD+  +   +I++ +  +   + V++ R   DV +
Sbjct: 9   LNNIFQSNEVADEAFYEELEEAMILSDVSYSSCMRIIDAVKHEANQRGVNLTR---DVQK 65

Query: 91  LIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++   ++ L   +   + F     +I V+GVNGVGKTT IGKL+  +   G KV+LAA D
Sbjct: 66  ILKDYILDLMMVEEGYYAFEQEKSIISVIGVNGVGKTTSIGKLAYHLKKKGKKVILAAAD 125

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+ AI+QL  W +R   D +  + GSD AA+ ++A +  +AK  DVLIIDTAGRLHN 
Sbjct: 126 TFRAGAIEQLVEWGNRVGVDVIHQKEGSDPAAVVFDALQSFKAKNADVLIIDTAGRLHNK 185

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  +GK+ R++ R         L VLDATTGQNA+ Q ++F   +  TG+I++KMD 
Sbjct: 186 KNLMQELGKINRIIDREFAEGYRETLVVLDATTGQNAMSQAKLFKECSQVTGVILSKMDS 245

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TA+GG  + I     +PV ++G GE + +L+ F AK +
Sbjct: 246 TAKGGMALSIQAELGLPVKYMGTGEKVENLQRFDAKRY 283


>gi|325283670|ref|YP_004256211.1| signal recognition particle-docking protein FtsY [Deinococcus
           proteolyticus MRP]
 gi|324315479|gb|ADY26594.1| signal recognition particle-docking protein FtsY [Deinococcus
           proteolyticus MRP]
          Length = 320

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/315 (37%), Positives = 176/315 (55%), Gaps = 25/315 (7%)

Query: 11  LSWIRKLTKGFASTSLKLKEGI----TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           ++W  +L  G   T  +L +       D+ S  R D+G  E+LE  L+ +D+G      I
Sbjct: 5   MTWADRLRGGLQKTRAQLNQNAGFLGRDLRSYTR-DEGALEDLEMALLAADVGGPATADI 63

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRP----- 111
           +  +   R    ++    L D   LI ++  P  +P          F       P     
Sbjct: 64  LRSVQASRRPDLLAA---LSDA--LIEQLEPPKQEPAAGSNGLTPWFQPRVKPSPVEPAG 118

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           HV++V+GVNGVGKTT I KL +   + G  VM  AGDTFR+AA  QL++W +R     V 
Sbjct: 119 HVVMVIGVNGVGKTTTIAKLGQHYMEHGKSVMFGAGDTFRAAAGAQLEVWGNRLGVPVVQ 178

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            + G D AA+A++A  + +A+  D+L++DTAGRLHN + LM  + K+ RV+ + D   P 
Sbjct: 179 GKEGGDPAAVAFDAADKRKARGTDLLLVDTAGRLHNQTNLMQELQKVHRVIGKADAGEPA 238

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V  VLDA TGQN L+Q + F+     TG+++TK+DGTA+GG LIPIV    +P+ F+GV
Sbjct: 239 EVWMVLDAVTGQNGLQQAKKFNEAIALTGVVVTKLDGTAKGGILIPIVRELGVPIKFIGV 298

Query: 292 GEGINDLEPFVAKDF 306
           GE  +DL+PF A ++
Sbjct: 299 GEQADDLQPFNAAEY 313


>gi|57900093|dbj|BAD88155.1| putative chloroplast SRP receptor cpFtsY precursor [Oryza sativa
           Japonica Group]
 gi|215765041|dbj|BAG86738.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218189770|gb|EEC72197.1| hypothetical protein OsI_05275 [Oryza sativa Indica Group]
 gi|222619905|gb|EEE56037.1| hypothetical protein OsJ_04826 [Oryza sativa Japonica Group]
          Length = 363

 Score =  199 bits (506), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVA 63
           +  ++ S + KL  GF+ T   L   + ++++   L D  R  +ELE+ L+ SD G  ++
Sbjct: 53  IQEKAKSDVEKLFSGFSKTRESLSV-VDELLTYWNLADTDRVLDELEEALLVSDFGPKIS 111

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFS---HRPHVILVVG 118
            +IV+ L  +   +D  ++    ++ E + + ++ L  SK  N +      +P VI++VG
Sbjct: 112 FRIVDTL--REEIRDGKLKSG-AEIKEALKRCILELLTSKGGNPELQLGFRKPAVIMIVG 168

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSD 177
           VNG GKTT +GKL+ +  + G+KV++AAGDTFR+AA DQL++WA+RT ++ V  ++  + 
Sbjct: 169 VNGGGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAK 228

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++  +A K+ + +  D+++ DT+GRLH N  LM  +    +V+ +  P AP+ +L VL
Sbjct: 229 PASVLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVL 288

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D TTG N L+Q   F+ V G TG ++TK+DGTARGG ++ +V    IPV F+GVGEG+ D
Sbjct: 289 DGTTGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMED 348

Query: 298 LEPFVAKDFSAVI 310
           L+PF A+ F   I
Sbjct: 349 LQPFDAEAFVEAI 361


>gi|330954981|gb|EGH55241.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae Cit 7]
          Length = 442

 Score =  199 bits (506), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 104/245 (42%), Positives = 156/245 (63%), Gaps = 2/245 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV     I++ 
Sbjct: 193 VGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKS 252

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG GKTT I
Sbjct: 253 LTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTTI 312

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + 
Sbjct: 313 GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQA 372

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q
Sbjct: 373 AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQ 432

Query: 249 VEMFH 253
            + F+
Sbjct: 433 AKQFN 437


>gi|294102040|ref|YP_003553898.1| signal recognition particle-docking protein FtsY [Aminobacterium
           colombiense DSM 12261]
 gi|293617020|gb|ADE57174.1| signal recognition particle-docking protein FtsY [Aminobacterium
           colombiense DSM 12261]
          Length = 310

 Score =  199 bits (506), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/280 (39%), Positives = 168/280 (60%), Gaps = 6/280 (2%)

Query: 31  GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVLYDV 88
           G+  + S   +D+   + LE++LI  D+G+ + ++++EEL    KR       Q + Y +
Sbjct: 21  GLVSLFSGSTIDEEFWDSLEEILISGDVGIDLTEELIEELQKTVKREGLKTPDQLIAYFI 80

Query: 89  SELIHKMLM--PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             +  +++    + K    D S  P VI++VGVNG GKTT   KL+++    G KV+L A
Sbjct: 81  DLVTERLVAVDGMGKEIVLDKS--PKVIVLVGVNGSGKTTTAAKLAEQFHRQGKKVILGA 138

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+AAIDQLKIW +RT +  +  + GSD+AA+AY+A + A+A   DVLIIDTAGRLH
Sbjct: 139 ADTFRAAAIDQLKIWGERTGSRVIAQQQGSDSAAVAYDALQAARASGADVLIIDTAGRLH 198

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
           +   LM  + K++RV++R         L VLDA  GQN   Q E FH      G+I++K 
Sbjct: 199 SKHNLMEELTKIVRVIEREVGRDSMENLLVLDAVMGQNGFAQAESFHKALSLNGVILSKY 258

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           D TA+GG ++ I     +P+ ++G+GE ++DL  F  ++F
Sbjct: 259 DNTAKGGVILAIAHRLALPIRYIGLGESVDDLRLFEPQEF 298


>gi|168030830|ref|XP_001767925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680767|gb|EDQ67200.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 383

 Score =  199 bits (506), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 121/301 (40%), Positives = 180/301 (59%), Gaps = 12/301 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDG--VREELEDLLIRSDIGVAVAQKIVE--- 68
           I+ L  GF+ T   L   + ++++   LD+   + +ELE++L+ SD G   A KIV+   
Sbjct: 81  IQLLFSGFSKTRENLAV-VDELLTYWNLDESESILDELEEVLLVSDFGPKTALKIVDTIR 139

Query: 69  -ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTT 126
            ++L  R      ++  L    + I K+L            + RP V+++VGVNG GKTT
Sbjct: 140 KDILAGRLKSGPQIKEAL---KKNIFKLLTERVTTTELQLGNSRPAVLMIVGVNGGGKTT 196

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEA 185
            +GKL+ +    G+KV++AAGDTFR+AA +QL++WA RT ++ V +E      AA+  +A
Sbjct: 197 TLGKLANRFKKEGVKVLMAAGDTFRAAAGEQLEVWAQRTGSEIVMAEGPKPRPAAVLSQA 256

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++A  +  DV++ DT+GRLH N  LM  +    R + +    AP+ VL VLD TTG N 
Sbjct: 257 VRRAVEEDFDVVLCDTSGRLHTNYNLMEELRGCKRAVSKALSSAPNEVLLVLDGTTGLNM 316

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q   F+ V G TG I+TK+DGTARGG ++ +V    IPV F+GVGEGI+DL+PF A+ 
Sbjct: 317 LAQAREFNQVIGVTGFILTKLDGTARGGCVVSVVDELSIPVKFVGVGEGIDDLQPFDAQS 376

Query: 306 F 306
           F
Sbjct: 377 F 377


>gi|325832904|ref|ZP_08165577.1| signal recognition particle-docking protein FtsY [Eggerthella sp.
           HGA1]
 gi|325485769|gb|EGC88233.1| signal recognition particle-docking protein FtsY [Eggerthella sp.
           HGA1]
          Length = 306

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 117/312 (37%), Positives = 191/312 (61%), Gaps = 16/312 (5%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  ++++G   +  K KE +  ++     LD+   + LE+ LI +D+G A A +IVE 
Sbjct: 1   MGFFDRISEGLTRSRDKFKEQMNVLLDRGPDLDEEFWDGLEETLILADVGGAAAAEIVEG 60

Query: 70  LLTKRYAKDVSVQRVL---YDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKT 125
           L      +D + ++ L   Y V +L++  +         D    +P ++L VG+NG GKT
Sbjct: 61  L------RDQATRKALPDAYAVLDLLNDQIASTFTEGGEDVLGGQPALVLFVGINGTGKT 114

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL+K+ +DAG  V+L + DTFR+AAI+QL++WA R + + V  E GSD A++ Y+ 
Sbjct: 115 TTVGKLAKEATDAGRTVILGSADTFRAAAIEQLEVWAKRANVEVVTRERGSDPASVCYDT 174

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++A+++  D+++IDTAGRLH ++ LM  + K++ V+++      ++VL V DATTGQN 
Sbjct: 175 IERAESRGADLVLIDTAGRLHTSADLMRELEKVVNVVRKRSQLPVYTVL-VTDATTGQNG 233

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVA 303
           L Q   F       G+I+TK+DGTA+GG  I + V+H+  +PV  +GVGEG++DL  F A
Sbjct: 234 LSQAREFDRALDLDGVIVTKLDGTAKGG--IALAVSHELGLPVLKIGVGEGLDDLRDFDA 291

Query: 304 KDFSAVITGCLD 315
            DF+  + G  D
Sbjct: 292 HDFARALVGEFD 303


>gi|291294801|ref|YP_003506199.1| signal recognition particle-docking protein FtsY [Meiothermus ruber
           DSM 1279]
 gi|290469760|gb|ADD27179.1| signal recognition particle-docking protein FtsY [Meiothermus ruber
           DSM 1279]
          Length = 305

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 179/311 (57%), Gaps = 14/311 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +SW+++L +G + T    ++ +   I      + V EELE  LI +D+GV   Q+++EE+
Sbjct: 1   MSWLQRLKEGLSKT----RDNLVKAIPWGEDPEAVLEELEFALIAADVGVEATQEVLEEV 56

Query: 71  -------LTKRYAKDVSVQRVLYDVSELIHKM-LMPLSKPFNWDFSHRPHVILVVGVNGV 122
                  L +   + ++VQ         I K    P +K    + + +  VIL+VGVNGV
Sbjct: 57  RQSGKKDLREALKQALTVQLEPDRFRAKIRKAGFNPNAKKSTVEPAGK--VILMVGVNGV 114

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I KL +     G  VM  AGDTFR+A   QL +W +R     +    GSD AALA
Sbjct: 115 GKTTTIAKLGQYYQSKGRSVMFCAGDTFRAAGGAQLGLWGERLGIPVIQGPEGSDPAALA 174

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A    +A+ +D+L++DTAGRLH    LM  + K+ R + + DP  P  V  VLDA TG
Sbjct: 175 FDAASARKARGLDLLLVDTAGRLHTKHNLMEELAKVKRSIAKADPGEPGEVWLVLDAVTG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN L Q + FH   G TG+I+TK+DGTA+GG L+PIV T  +P+ F+GVGE  +DL+PF 
Sbjct: 235 QNGLEQAKKFHQTVGLTGVIVTKLDGTAKGGVLVPIVRTLGVPIKFIGVGEKADDLQPFD 294

Query: 303 AKDFSAVITGC 313
           A +F   + G 
Sbjct: 295 AGEFVEALLGA 305


>gi|294618512|ref|ZP_06698074.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1679]
 gi|291595212|gb|EFF26543.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1679]
          Length = 332

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 98/194 (50%), Positives = 133/194 (68%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VIL VGVNGVGKTT IGKL+ +  + G KV++AA DTFR+ AIDQL +W +R   + V  
Sbjct: 127 VILFVGVNGVGKTTSIGKLAHQFKNEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRG 186

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G D AA+ ++A ++A+ ++ DVL++DTAGRL N   LM  + K+ RV++R  P AP  
Sbjct: 187 NAGGDPAAVVFDALERAKIEQADVLLVDTAGRLQNKVNLMNELEKIKRVIQRELPEAPQE 246

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L VLDATTGQNA+ Q + F      TGL++TK+DGTA+GG ++ I     +PV  +G+G
Sbjct: 247 TLLVLDATTGQNAMVQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELHLPVKLVGLG 306

Query: 293 EGINDLEPFVAKDF 306
           EGI+DLEPF   DF
Sbjct: 307 EGIDDLEPFDPNDF 320


>gi|21673041|ref|NP_661106.1| signal recognition particle-docking protein FtsY [Chlorobium
           tepidum TLS]
 gi|21646108|gb|AAM71448.1| signal recognition particle-docking protein FtsY [Chlorobium
           tepidum TLS]
          Length = 316

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 122/300 (40%), Positives = 180/300 (60%), Gaps = 23/300 (7%)

Query: 27  KLKEGITDIISSRR------------LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +LKEG+T    + R            +DD   EELE++L+ +D+GV     IV+ +  + 
Sbjct: 11  RLKEGLTKTRDTLRDKLAFVSRGKTEVDDEFLEELENILVAADVGVETTLDIVDAVTVRS 70

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWD--FSHRPHVILVVGVNGVGKTT 126
             K     R   +++E++   +  L        P ++D   S +P+VI++VGVNG GKTT
Sbjct: 71  KGK---TYRSEEELNEMVMGEIRNLLVESGHEHPVDFDAPLSAKPYVIMIVGVNGAGKTT 127

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            + KL+     AG KV++AA DTFR+AA +QLKIWADR     +    G+D A++ +++ 
Sbjct: 128 TVAKLAHNYDKAGKKVVIAAADTFRAAAYEQLKIWADRAGVPIIGQGQGADPASVVFDSV 187

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A +K  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQNA+
Sbjct: 188 SSAVSKGTDVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQNAV 247

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +Q   F      TGL+MTK+DGT++GG ++ I     +PV ++GVGE I+DL+ F  K F
Sbjct: 248 QQAREFTKFVNVTGLVMTKLDGTSKGGIVLSISRELNLPVKYIGVGEKIDDLQLFDRKSF 307


>gi|212696165|ref|ZP_03304293.1| hypothetical protein ANHYDRO_00701 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676794|gb|EEB36401.1| hypothetical protein ANHYDRO_00701 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 367

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 186/302 (61%), Gaps = 9/302 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           L +  KL+KG   T  +    + ++ ++  ++DD + +ELE++LI +DIG+    +IV+E
Sbjct: 63  LGFFEKLSKGLTKTREQFSSKLKNLFTANVKIDDDLYDELEEILISADIGMQSTIEIVDE 122

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-----SHRPHVILVVGVNGVGK 124
           L  K   K+ S++     +  L+ +++       N D      + +  VILV+GVNGVGK
Sbjct: 123 L--KDKIKERSIKNA-DQIFPLLKEIMEDKLDEKNLDNELLISNDKLSVILVIGVNGVGK 179

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+  +   G KV LAA DTFR+AAI+QL  WA  ++   +  + GSD +A+ ++
Sbjct: 180 TTTIGKLAHNLKKEGHKVTLAAADTFRAAAIEQLDSWAKESNTQMIAHKEGSDPSAVIFD 239

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+A   DVLI DTAGRLHN   LM  + K+ R +     +A    L VLDATTGQN
Sbjct: 240 AIQAAKANGSDVLICDTAGRLHNKKNLMNELEKINRTISTHANNANRENLLVLDATTGQN 299

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q+  F  V   TGLI+TK+DGTA+GG + P+ V  ++PV ++GVGEGI++LE F +K
Sbjct: 300 AISQLREFKNVCEITGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGIDNLEKFDSK 359

Query: 305 DF 306
            F
Sbjct: 360 SF 361


>gi|223932803|ref|ZP_03624800.1| signal recognition particle-docking protein FtsY [Streptococcus
           suis 89/1591]
 gi|302023940|ref|ZP_07249151.1| Signal recognition particle GTPase [Streptococcus suis 05HAS68]
 gi|330832992|ref|YP_004401817.1| signal recognition particle-docking protein FtsY [Streptococcus
           suis ST3]
 gi|223898512|gb|EEF64876.1| signal recognition particle-docking protein FtsY [Streptococcus
           suis 89/1591]
 gi|329307215|gb|AEB81631.1| signal recognition particle-docking protein FtsY [Streptococcus
           suis ST3]
          Length = 424

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 127/305 (41%), Positives = 178/305 (58%), Gaps = 13/305 (4%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE   + R L K       +L E   +    R +D+   EELE++LI SD+GV VA  + 
Sbjct: 118 SEQDKYQRTLKKTRTGFGARLNEFFANF---RSVDEEFFEELEEMLILSDVGVQVASTLT 174

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH------VILVVGVNG 121
           EEL   RY   +   +   ++  +I + L+ + +  +  FS R +      V+L VGVNG
Sbjct: 175 EEL---RYEAKLQNAKKTDELRRVIIEKLVDIYEK-DGQFSERINFQDDLTVMLFVGVNG 230

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ K   AG KVML A DTFR+ A+ QL  W  R     V     SD A++
Sbjct: 231 VGKTTSIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGPEKSDPASV 290

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++  K+A A+ VD+L+IDTAGRL N   LMA + K+ R++KR  P APH  L  LDA+T
Sbjct: 291 VFDGVKRAVAEGVDILMIDTAGRLQNKENLMAELEKIGRIIKRTLPDAPHETLLALDAST 350

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + F  +   TGL++TK+DGTA+GG ++ I     IPV  +G GE I+D+  F
Sbjct: 351 GQNALSQAKEFAKITPLTGLVLTKLDGTAKGGVVLAIRQELDIPVKLIGFGEKIDDIGEF 410

Query: 302 VAKDF 306
            +++F
Sbjct: 411 KSEEF 415


>gi|222112013|ref|YP_002554277.1| signal recognition particle-docking protein ftsy [Acidovorax ebreus
           TPSY]
 gi|221731457|gb|ACM34277.1| signal recognition particle-docking protein FtsY [Acidovorax ebreus
           TPSY]
          Length = 382

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 181/301 (60%), Gaps = 11/301 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W+ +L  G   T       I  + +  +++D + +ELE+ L+ +D GV   Q ++E+L  
Sbjct: 88  WMDRLKSGLRKTG----SSIATVFTGTQINDALYDELEEALLMADTGVKATQHLLEDL-- 141

Query: 73  KRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           KR  K+        V   +++ +  +L PL KP      H P VI+V GVNG GKTT IG
Sbjct: 142 KRRVKETKTTEPAAVKGLLADALADLLRPLEKPLVIG-EHTPTVIMVAGVNGAGKTTSIG 200

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K ++D G  V+LAA DTFR+AA +QL +WA R + + V  E G D AA++++A    
Sbjct: 201 KLTKHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEIVSQE-GGDPAAVSFDAVTAG 259

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL QV
Sbjct: 260 RARGKDVVLVDTAGRLPTQLHLMEELKKIRRVVTKADASAPHEVLLVIDGNTGQNALAQV 319

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F      TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DLE F A++F+  
Sbjct: 320 RAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFSAREFAQA 379

Query: 310 I 310
           +
Sbjct: 380 L 380


>gi|260558341|ref|ZP_05830537.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium C68]
 gi|293556821|ref|ZP_06675382.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1039]
 gi|260075515|gb|EEW63821.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium C68]
 gi|291600905|gb|EFF31196.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1039]
          Length = 332

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 98/194 (50%), Positives = 132/194 (68%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R   + V  
Sbjct: 127 VILFVGVNGVGKTTSIGKLAHQFKKEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRG 186

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G D AA+ ++A ++A+ ++ DVL++DTAGRL N   LM  + K+ RV++R  P AP  
Sbjct: 187 NAGGDPAAVVFDALERAKTEQADVLLVDTAGRLQNKVNLMNELEKIKRVIQRELPEAPQE 246

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L VLDATTGQNA+ Q + F      TGL++TK+DGTA+GG ++ I     +PV  +G+G
Sbjct: 247 TLLVLDATTGQNAMVQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELHLPVKLVGLG 306

Query: 293 EGINDLEPFVAKDF 306
           EGI+DLEPF   DF
Sbjct: 307 EGIDDLEPFDPNDF 320


>gi|225025909|ref|ZP_03715101.1| hypothetical protein EUBHAL_00145 [Eubacterium hallii DSM 3353]
 gi|224956695|gb|EEG37904.1| hypothetical protein EUBHAL_00145 [Eubacterium hallii DSM 3353]
          Length = 313

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/303 (40%), Positives = 183/303 (60%), Gaps = 10/303 (3%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   +  +L  G   T   +  G+  I     ++DD   EELE++LI  D+GV     I+
Sbjct: 3   EKKGFFSRLVSGLTKTRKNIASGLDSIFHGFSKIDDDFYEELEEILIMGDLGVDTTMNII 62

Query: 68  EEL---LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           E+L   + + + K+    +++L D    I K  M + +   +++ +R  V+LV+GVNGVG
Sbjct: 63  EDLQERVKEEHIKEPAECRQLLID----IIKKQMEVDET-AYEYENRTSVVLVIGVNGVG 117

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ ++     KV++AA DTFR+AAI+QL  W++R   D +  + GSD AA+ Y
Sbjct: 118 KTTTIGKLAAQLKSQNKKVIMAAADTFRAAAIEQLTEWSNRAGVDIIAQQEGSDPAAVIY 177

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+++  DVL+ DTAGRLHN   LM  + K+ RV++R  P A    L VLD TTGQ
Sbjct: 178 DACQAAKSRHADVLLCDTAGRLHNKKNLMNELSKIRRVIEREFPEAYLETLIVLDGTTGQ 237

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F  V+  +G+++TK+DGTA+GG  I I     IPV ++G+GE I DL+ F A
Sbjct: 238 NALVQAKQFKEVSDISGIVLTKLDGTAKGGIAIAIQAELGIPVKYIGIGEKIEDLQKFDA 297

Query: 304 KDF 306
             F
Sbjct: 298 DSF 300


>gi|229140491|ref|ZP_04269046.1| Cell division protein ftsY [Bacillus cereus BDRD-ST26]
 gi|229197957|ref|ZP_04324672.1| Cell division protein ftsY [Bacillus cereus m1293]
 gi|228585536|gb|EEK43639.1| Cell division protein ftsY [Bacillus cereus m1293]
 gi|228643052|gb|EEK99328.1| Cell division protein ftsY [Bacillus cereus BDRD-ST26]
          Length = 260

 Score =  199 bits (505), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 103/227 (45%), Positives = 149/227 (65%), Gaps = 8/227 (3%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPH-------VILVVGVNGVGKTTVIGKLSKKMSDAG 139
           +V  +I + L+ + K  + DF++  +       V+L VGVNGVGKTT IGK++ K    G
Sbjct: 21  EVQAVISEKLIEIYKG-DSDFTNEINEQKDGLTVVLFVGVNGVGKTTTIGKMAHKFKSEG 79

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+LAAGDTFR+ AI+QL++W DR   + +    GSD AA+ Y+A + A+A+KVDVL+ 
Sbjct: 80  KSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDPAAVMYDAVQAAKARKVDVLLC 139

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQN L Q + F      T
Sbjct: 140 DTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVIDATTGQNGLSQAKTFREATNVT 199

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL+ F  + +
Sbjct: 200 GIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDLQQFDPEQY 246


>gi|169342687|ref|ZP_02863728.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens C str. JGS1495]
 gi|169299193|gb|EDS81263.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens C str. JGS1495]
          Length = 304

 Score =  199 bits (505), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 127/294 (43%), Positives = 185/294 (62%), Gaps = 3/294 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73
           KL  G   T   L + I + ++ +  +DD + EELE+ LI SDIG+    +I++ L  K 
Sbjct: 8   KLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTIEIIDRLKAKI 67

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           R  K   V+ V   + E+I +M++        + + +  V+L++GVNGVGKTT IGK++ 
Sbjct: 68  RKEKINDVEMVKPALKEVIAEMMLEGDSEEEEEDNEK-KVMLIIGVNGVGKTTSIGKIAA 126

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +  + G KV+LAA DTFR+AAIDQL IW+ R + D V  + GSD AA+ ++A + A+A+ 
Sbjct: 127 RNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKARD 186

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           VD+LI DTAGRLHN   LM  + K+ R++ R         L VLD TTGQNA+ Q + F 
Sbjct: 187 VDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQFM 246

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 G+I+TK+DGTA+GG +I I  T  IPV ++GVGEG++DL+ F AK+F+
Sbjct: 247 EACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVDDLQKFNAKEFA 300


>gi|154483579|ref|ZP_02026027.1| hypothetical protein EUBVEN_01283 [Eubacterium ventriosum ATCC
           27560]
 gi|149735489|gb|EDM51375.1| hypothetical protein EUBVEN_01283 [Eubacterium ventriosum ATCC
           27560]
          Length = 317

 Score =  199 bits (505), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 178/299 (59%), Gaps = 8/299 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           ++ +KL  G   T   +   +  I +    +DD   EELE++LI SDIGV   ++I++ L
Sbjct: 3   NFFKKLVSGLTKTRNNIVSNLNSIFNGFSSIDDDFYEELEEILIMSDIGVNTTEEILDNL 62

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             K   K+  ++  + +  EL+ K +   M L +   +DF +   VIL++GVNGVGKTT 
Sbjct: 63  --KEQVKENKIKEPI-ECKELLIKNIEEQMDLGENA-YDFENEKSVILMIGVNGVGKTTS 118

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +  + G KV+LAA DTFR+AA DQLK WA+R + D V    GSD  ++ Y+A  
Sbjct: 119 IGKLASQFKNNGKKVVLAAADTFRAAATDQLKEWANRANVDIVMGAEGSDPGSVLYDAIS 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K  D+L+ DTAGRLHN   LM  + K+ R++++           VLDATTGQNAL 
Sbjct: 179 SAKNKNADILLCDTAGRLHNKKNLMEELKKLDRIIEKEYNGCRRENFIVLDATTGQNALA 238

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q   F      TG+I+TKMDG+A+GG  I I     IPV ++GVGE I+DL+ F +  F
Sbjct: 239 QARQFKECTDITGVILTKMDGSAKGGIAIAIQSELGIPVKYIGVGEQIDDLQKFDSHQF 297


>gi|221194823|ref|ZP_03567880.1| signal recognition particle-docking protein FtsY [Atopobium rimae
           ATCC 49626]
 gi|221185727|gb|EEE18117.1| signal recognition particle-docking protein FtsY [Atopobium rimae
           ATCC 49626]
          Length = 301

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/268 (38%), Positives = 168/268 (62%), Gaps = 6/268 (2%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           ++LED L+  D+G  VA ++ + L  +   ++++    L   S LI ++     +     
Sbjct: 34  DDLEDTLVMGDMGAEVAIRVTDHLREQAAKENLTRSHQLR--SALIERLSEEFPRASRDP 91

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           F   P ++L VG+NG GKTT +GKL+ +    G++V++   DTFR+AAI+QL++W  R+ 
Sbjct: 92  FVDTPSIVLFVGINGAGKTTTVGKLAGRAQSDGVRVLIGGADTFRAAAIEQLEVWGSRSG 151

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V  E G+D A++ Y+  ++A+ +  ++++IDTAGRLH +S LM  + K++ V ++  
Sbjct: 152 VEVVTRERGADPASVCYDVIEEAEKRGSELVLIDTAGRLHTSSDLMRELAKVVSVTRKRA 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK--I 284
              P SV+ V+DATTGQN L Q + F+      GLI+TK+DGTA+GG  I + ++H+  +
Sbjct: 212 GITPVSVVLVIDATTGQNGLNQAKEFNDALDLDGLIVTKLDGTAKGG--IALAISHQLNL 269

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITG 312
           P+Y +GVGE I+DL+ F A DF A + G
Sbjct: 270 PIYRIGVGESIDDLQTFDAHDFCAALVG 297


>gi|153853251|ref|ZP_01994660.1| hypothetical protein DORLON_00645 [Dorea longicatena DSM 13814]
 gi|149754037|gb|EDM63968.1| hypothetical protein DORLON_00645 [Dorea longicatena DSM 13814]
          Length = 317

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 128/299 (42%), Positives = 186/299 (62%), Gaps = 6/299 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL  G   T   +  G+  I     R+DD   EELE++LI  D+GV     I+++
Sbjct: 1   MGFFEKLVAGLGKTRDNIVSGMDSIFHGFSRIDDDFYEELEEVLIMGDLGVQATYDILDD 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIH--KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           L  K   K+  ++  +     LI   K  M + +   ++F +R  V++V+GVNGVGKTT 
Sbjct: 61  LKAK--VKEKHIKEPMECRELLIESIKEQMDIGET-AYEFENRTSVVMVIGVNGVGKTTT 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ K+     KV++AA DTFR+AA +QLK WA+R+ A+ +  + GSD A++ ++A  
Sbjct: 118 IGKLAGKLRAENKKVVIAAADTFRAAAGEQLKEWANRSQAELIGGQEGSDPASVVFDAVA 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DVL+IDTAGRLHN   LM  + KM +++ R  P A    L VLDATTGQNAL+
Sbjct: 178 AAKARHADVLMIDTAGRLHNKKNLMEELRKMNKIIDREFPEAYRETLVVLDATTGQNALQ 237

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q + F+ VA  TG+++TKMDGTA+GG  + I     +PV ++GVGE I+DL+ F A DF
Sbjct: 238 QAKEFNDVAEITGIVLTKMDGTAKGGIAVAIHAELGVPVKYIGVGETIDDLQKFNADDF 296


>gi|227824340|ref|ZP_03989172.1| signal recognition particle-docking protein ftsY [Acidaminococcus
           sp. D21]
 gi|226904839|gb|EEH90757.1| signal recognition particle-docking protein ftsY [Acidaminococcus
           sp. D21]
          Length = 304

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 122/299 (40%), Positives = 180/299 (60%), Gaps = 5/299 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S++ +L +G   T     E + D++  S  LD+   +ELE +L+  D+G+   +KI++ 
Sbjct: 1   MSFVEELRQGLEKTRKNFTERMEDLVGISVDLDEDFMDELEMILVAGDVGIKTTEKIMQA 60

Query: 70  LLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      +++ S    L  + + I  ML       N  F   P ++LVVGVNGVGKTT I
Sbjct: 61  LRKAAATREIKSPAEALPFIKQYIADMLTVKGPRMN--FKGHPTIVLVVGVNGVGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDAAALAYEAFK 187
           GKL+      G KVM AA DTFR+ A++QLKIW ++     +   +IG+D AA+ Y+  K
Sbjct: 119 GKLANYYRLMGYKVMCAAADTFRAGAVEQLKIWGEKAQVPVISHGDIGADPAAVVYDGVK 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A+ +DVL +DTAGRLHN + LM  + KM RV+++  P  PH  L VLDATTGQNA+ 
Sbjct: 179 AAMARHIDVLFVDTAGRLHNKTNLMKELDKMYRVIRKEVPDGPHETLLVLDATTGQNAIT 238

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++F   A  TG+++TK+DGTA+GG ++ I     + V ++G+GEG+ D  PF  K F
Sbjct: 239 QAKIFLETAHVTGVVLTKLDGTAKGGVVVAIKEELGLDVKWIGIGEGMMDFRPFDPKVF 297


>gi|121595813|ref|YP_987709.1| signal recognition particle-docking protein FtsY [Acidovorax sp.
           JS42]
 gi|120607893|gb|ABM43633.1| signal recognition particle-docking protein FtsY [Acidovorax sp.
           JS42]
          Length = 382

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 181/301 (60%), Gaps = 11/301 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W+ +L  G   T       I  + +  +++D + +ELE+ L+ +D GV   Q ++E+L  
Sbjct: 88  WMDRLKSGLRKTG----SSIATVFTGTQINDALYDELEEALLMADTGVKATQHLLEDL-- 141

Query: 73  KRYAKDVSVQR---VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           KR  K+        V   +++ +  +L PL KP      H P VI+V GVNG GKTT IG
Sbjct: 142 KRRVKETKTTEPAAVKGLLADALADLLRPLEKPLVIG-EHTPTVIMVAGVNGAGKTTSIG 200

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K ++D G  V+LAA DTFR+AA +QL +WA R + + V  E G D AA++++A    
Sbjct: 201 KLTKHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEIVSQE-GGDPAAVSFDAVTAG 259

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL QV
Sbjct: 260 RARGKDVVLVDTAGRLPTQLHLMEELKKIRRVVTKADASAPHEVLLVIDGNTGQNALAQV 319

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F      TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DLE F A++F+  
Sbjct: 320 RAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFSAREFAQA 379

Query: 310 I 310
           +
Sbjct: 380 L 380


>gi|313906052|ref|ZP_07839404.1| signal recognition particle-docking protein FtsY [Eubacterium
           cellulosolvens 6]
 gi|313469097|gb|EFR64447.1| signal recognition particle-docking protein FtsY [Eubacterium
           cellulosolvens 6]
          Length = 307

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 14/312 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + + ++L  G   +   ++E + +      +DD   E LE+ L+ SD+G+   Q ++E L
Sbjct: 1   MGFFKRLFSGLTKSRDSIQENLDEAFGCSEIDDEFYENLEEALVASDMGIETTQTVIENL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGVNGVGKT 125
                 +D+     +   ++    M+    +  N     + F  R  V+L++GVNGVGKT
Sbjct: 61  ------QDIVADLDIKKPADCKKYMVDCFRQQMNVGQTDYSFEDRKSVVLIIGVNGVGKT 114

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL+ K    G KVM+AA DTFR+AAI QL+ WA+R   + +  + G+D A++ Y+A
Sbjct: 115 TTVGKLAAKYKATGKKVMIAAADTFRAAAIPQLETWANRAGVEIIEGQEGADPASVVYDA 174

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+  D+L+IDTAGRLHN   LM  + K+ R+L +  P A    L VLD TTGQNA
Sbjct: 175 ISAAKARDTDMLLIDTAGRLHNKKNLMEELRKIYRILAKSYPEASLETLLVLDGTTGQNA 234

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q   F  VA  TGL++TK+DGTA+GG  + +     IPV ++GVGE ++DL+ F   D
Sbjct: 235 ILQARSFAEVADITGLVITKLDGTAKGGIAVAVQSELDIPVKYIGVGEQLDDLQKF---D 291

Query: 306 FSAVITGCLDYG 317
            SA +    D G
Sbjct: 292 PSAYVDALFDTG 303


>gi|281411789|ref|YP_003345868.1| signal recognition particle-docking protein FtsY [Thermotoga
           naphthophila RKU-10]
 gi|281372892|gb|ADA66454.1| signal recognition particle-docking protein FtsY [Thermotoga
           naphthophila RKU-10]
          Length = 294

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/294 (43%), Positives = 177/294 (60%), Gaps = 9/294 (3%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L KG   T       +  ++  ++LDD  REELE+LLI++D+GV   + I+E L  K   
Sbjct: 7   LKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLEEKDGD 66

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
              S++ ++ ++     K+ +P   PF         VI+VVGVNG GKTT  GKL+K   
Sbjct: 67  ALESLKEIILEILNFDTKLNVPPEPPF---------VIMVVGVNGTGKTTSCGKLAKMFV 117

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           D G  V+LAA DTFR+AAI+QLKIW +R  A  +    G+D AA+A++A   A A+  DV
Sbjct: 118 DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDV 177

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +IIDTAGRLH    LM  + K+ RV+K+  P APH  L V+DATTGQN L Q ++F    
Sbjct: 178 VIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV 237

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
             TG+I+TK+DGTA+GG  + I     IP+ F+GVGE   DL PF  + F  V+
Sbjct: 238 NVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVL 291


>gi|228986990|ref|ZP_04147116.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772768|gb|EEM21208.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 260

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 103/227 (45%), Positives = 149/227 (65%), Gaps = 8/227 (3%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPH-------VILVVGVNGVGKTTVIGKLSKKMSDAG 139
           +V  +I + L+ + K  + DF++  +       V+L VGVNGVGKTT IGK++ K    G
Sbjct: 21  EVQAVISEKLIEIYKG-DSDFTNEINMQKDGLTVVLFVGVNGVGKTTTIGKMAHKFKSEG 79

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+LAAGDTFR+ AI+QL++W DR   + +    GSD AA+ Y+A + A+A+KVDVL+ 
Sbjct: 80  KSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDPAAVMYDAVQAAKARKVDVLLC 139

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQN L Q + F      T
Sbjct: 140 DTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVIDATTGQNGLSQAKTFREATNVT 199

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL+ F  + +
Sbjct: 200 GIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDLQQFDPEQY 246


>gi|15643336|ref|NP_228380.1| cell division protein FtsY [Thermotoga maritima MSB8]
 gi|170288167|ref|YP_001738405.1| signal recognition particle-docking protein FtsY [Thermotoga sp.
           RQ2]
 gi|4981086|gb|AAD35655.1|AE001731_12 cell division protein FtsY [Thermotoga maritima MSB8]
 gi|170175670|gb|ACB08722.1| signal recognition particle-docking protein FtsY [Thermotoga sp.
           RQ2]
          Length = 294

 Score =  198 bits (504), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 129/294 (43%), Positives = 177/294 (60%), Gaps = 9/294 (3%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L KG   T       +  ++  ++LDD  REELE+LLI++D+GV   + I+E L  K   
Sbjct: 7   LKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLEEKDGD 66

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
              S++ ++ ++     K+ +P   PF         VI+VVGVNG GKTT  GKL+K   
Sbjct: 67  ALESLKEIILEILNFDTKLNVPPEPPF---------VIMVVGVNGTGKTTSCGKLAKMFV 117

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           D G  V+LAA DTFR+AAI+QLKIW +R  A  +    G+D AA+A++A   A A+  DV
Sbjct: 118 DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDV 177

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +IIDTAGRLH    LM  + K+ RV+K+  P APH  L V+DATTGQN L Q ++F    
Sbjct: 178 VIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV 237

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
             TG+I+TK+DGTA+GG  + I     IP+ F+GVGE   DL PF  + F  V+
Sbjct: 238 NVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVL 291


>gi|312877058|ref|ZP_07737031.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796199|gb|EFR12555.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 301

 Score =  198 bits (504), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 125/297 (42%), Positives = 186/297 (62%), Gaps = 4/297 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     E +  ++ S +++DD + EELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFFDRLKEGLSKTKKNFTEKVESLLKSFKQVDDELFEELEEVLVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  K   + +S       V EL+ + ++ +    N      P +IL+VGVNGVGKTT IG
Sbjct: 61  LKEKVKKEKISATEA---VKELLKEEMLSIINLENKLSEKYPLIILMVGVNGVGKTTSIG 117

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++  +   G KV++AA DTFR+AA +QL+IWA R   D +    GSD AA+ ++  +  
Sbjct: 118 KIANLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGSDPAAVVFDGIQAM 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQNAL Q 
Sbjct: 178 RARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEASKETLLVIDATTGQNALNQA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      +G+++TK+DGTA+GG +I I    KIPV F+GVGE I+DL+ F AK+F
Sbjct: 238 KEFDQAVNISGIVLTKLDGTAKGGIIISICDELKIPVKFVGVGEKIDDLQYFNAKEF 294


>gi|55670465|pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
           From Thermotoga Maritima At 1.60 A Resolution
 gi|55670466|pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
           From Thermotoga Maritima At 1.60 A Resolution
          Length = 306

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 129/294 (43%), Positives = 177/294 (60%), Gaps = 9/294 (3%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L KG   T       +  ++  ++LDD  REELE+LLI++D+GV   + I+E L  K   
Sbjct: 19  LKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLEEKDGD 78

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
              S++ ++ ++     K+ +P   PF         VI+VVGVNG GKTT  GKL+K   
Sbjct: 79  ALESLKEIILEILNFDTKLNVPPEPPF---------VIMVVGVNGTGKTTSCGKLAKMFV 129

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           D G  V+LAA DTFR+AAI+QLKIW +R  A  +    G+D AA+A++A   A A+  DV
Sbjct: 130 DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDV 189

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +IIDTAGRLH    LM  + K+ RV+K+  P APH  L V+DATTGQN L Q ++F    
Sbjct: 190 VIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV 249

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
             TG+I+TK+DGTA+GG  + I     IP+ F+GVGE   DL PF  + F  V+
Sbjct: 250 NVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVL 303


>gi|328952743|ref|YP_004370077.1| signal recognition particle-docking protein FtsY [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453067|gb|AEB08896.1| signal recognition particle-docking protein FtsY [Desulfobacca
           acetoxidans DSM 11109]
          Length = 405

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 134/203 (66%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +PHV++V+GVNGVGKTT I KL+    + G KV+L A DTFR+AAI+QL+IW  R  A  
Sbjct: 203 KPHVVMVIGVNGVGKTTTIAKLAHHDLEQGEKVLLVAADTFRAAAIEQLEIWGQRAGAAV 262

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +  + GSD AA+ ++    A A++VD + IDTAGRLH    LM  + K+ R   +    A
Sbjct: 263 IKQKTGSDPAAVVFDGLAAALARRVDKVYIDTAGRLHTKVNLMEELKKVARTAAKQIEGA 322

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL VLDATTGQNA+ Q  +FH   G TG+IMTK+DGTA+GG  + +V    +P+ F+
Sbjct: 323 PHEVLLVLDATTGQNAINQARLFHEAIGVTGIIMTKLDGTAKGGVALGVVQETGLPLQFI 382

Query: 290 GVGEGINDLEPFVAKDFSAVITG 312
           GVGE ++DL PF  + +   I G
Sbjct: 383 GVGEQMDDLRPFEPEAYLEAILG 405


>gi|312793351|ref|YP_004026274.1| signal recognition particle-docking protein ftsy
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180491|gb|ADQ40661.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 301

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 124/297 (41%), Positives = 187/297 (62%), Gaps = 4/297 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     E +  ++ S +++DD + EELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFFDRLKEGLSKTKKNFTEKVESLLKSFKQVDDELFEELEEVLVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  K   + +S       V EL+ + ++ +    N      P +IL+VGVNGVGKTT IG
Sbjct: 61  LKEKVKKEKISATEA---VKELLKEEMLSIINLENKLSEKYPLIILMVGVNGVGKTTSIG 117

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++  +   G KV++AA DTFR+AA +QL+IWA R   D +    GSD AA+ ++  +  
Sbjct: 118 KIANLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGSDPAAVVFDGIQAM 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQNAL Q 
Sbjct: 178 RARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEASKETLLVIDATTGQNALNQA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F+     +G+++TK+DGTA+GG +I I    +IPV F+GVGE I+DL+ F AK+F
Sbjct: 238 KEFNQAVNISGIVLTKLDGTAKGGIIISICDELRIPVKFVGVGEKIDDLQYFNAKEF 294


>gi|110800008|ref|YP_696402.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens ATCC 13124]
 gi|168207934|ref|ZP_02633939.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens E str. JGS1987]
 gi|168214192|ref|ZP_02639817.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens CPE str. F4969]
 gi|182625848|ref|ZP_02953614.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens D str. JGS1721]
 gi|110674655|gb|ABG83642.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens ATCC 13124]
 gi|170660748|gb|EDT13431.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens E str. JGS1987]
 gi|170714304|gb|EDT26486.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens CPE str. F4969]
 gi|177908882|gb|EDT71374.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens D str. JGS1721]
          Length = 304

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 185/297 (62%), Gaps = 3/297 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73
           KL  G   T   L + I + ++ +  +DD + EELE+ LI SDIG+    +I++ L  K 
Sbjct: 8   KLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTVEIIDRLKAKI 67

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           R  K   V+ V   + E+I +M++        + + +  V+L++GVNGVGKTT IGK++ 
Sbjct: 68  RKEKINDVEMVKPALKEVIAEMMLEGDSEEEEEDNEK-KVMLIIGVNGVGKTTSIGKIAA 126

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +  + G KV+LAA DTFR+AAIDQL IW+ R + D V  + GSD AA+ ++A + A+A+ 
Sbjct: 127 RNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKARD 186

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           VD+LI DTAGRLHN   LM  + K+ R++ R         L VLD TTGQNA+ Q + F 
Sbjct: 187 VDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQFM 246

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
                 G+I+TK+DGTA+GG +I I  T  IPV ++GVGEG+ DL+ F AK+F+  +
Sbjct: 247 EACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVEDLQKFNAKEFAEAL 303


>gi|110802156|ref|YP_699002.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens SM101]
 gi|110682657|gb|ABG86027.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens SM101]
          Length = 304

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 127/294 (43%), Positives = 184/294 (62%), Gaps = 3/294 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73
           KL  G   T   L + I + ++ +  +DD + EELE+ LI SDIG+    +I++ L  K 
Sbjct: 8   KLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTIEIIDRLKAKI 67

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           R  K   V+ V   + E+I +M++        + + +  V+L++GVNGVGKTT IGK++ 
Sbjct: 68  RKEKINDVEMVKPALKEVIAEMMLEGDSEEEEEDNEK-KVMLIIGVNGVGKTTSIGKIAA 126

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +  + G KV+LAA DTFR+AAIDQL IW+ R + D V  + GSD AA+ ++A + A+A+ 
Sbjct: 127 RNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKARD 186

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           VD+LI DTAGRLHN   LM  + K+ R++ R         L VLD TTGQNA+ Q + F 
Sbjct: 187 VDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQFM 246

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 G+I+TK+DGTA+GG +I I  T  IPV ++GVGEG+ DL+ F AK+F+
Sbjct: 247 EACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVEDLQKFNAKEFA 300


>gi|18310697|ref|NP_562631.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens str. 13]
 gi|18145378|dbj|BAB81421.1| signal recognition particle protein [Clostridium perfringens str.
           13]
          Length = 304

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 127/294 (43%), Positives = 184/294 (62%), Gaps = 3/294 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73
           KL  G   T   L + I + ++ +  +DD + EELE+ LI SDIG+    +I++ L  K 
Sbjct: 8   KLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTIEIIDRLKAKI 67

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           R  K   V+ V   + E+I +M++        + + +  V+L++GVNGVGKTT IGK++ 
Sbjct: 68  RKEKINDVEMVKPALKEVIAEMMLEGDYEEEEEDNEK-KVMLIIGVNGVGKTTSIGKIAA 126

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +  + G KV+LAA DTFR+AAIDQL IW+ R + D V  + GSD AA+ ++A + A+A+ 
Sbjct: 127 RNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKARD 186

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           VD+LI DTAGRLHN   LM  + K+ R++ R         L VLD TTGQNA+ Q + F 
Sbjct: 187 VDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQFM 246

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 G+I+TK+DGTA+GG +I I  T  IPV ++GVGEG+ DL+ F AK+F+
Sbjct: 247 EACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVEDLQKFNAKEFA 300


>gi|326506274|dbj|BAJ86455.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326532852|dbj|BAJ89271.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 355

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 120/310 (38%), Positives = 187/310 (60%), Gaps = 6/310 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVA 63
           +  ++ S + KL  GF+ T   L   + ++++   L D  R  ++LE+ L+ SD G  ++
Sbjct: 45  IKEKAKSDVDKLFSGFSKTRENLSV-VDELLTYWNLADTDRVLDDLEEALLVSDFGPKIS 103

Query: 64  QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNG 121
            +IV+ L  + R  K  S   +   +   I ++L             R P VI++VGVNG
Sbjct: 104 FRIVDTLRDEIRDGKLKSGTEIKASLKRCILELLTTKGSKTELQLGFRKPAVIMIVGVNG 163

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDAAA 180
            GKTT +GKL+ +  + G KV++AAGDTFR+AA DQL+IWA+RT ++ V  ++  + A +
Sbjct: 164 GGKTTSLGKLAHRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPS 223

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A K+ + +  D+++ DT+GRLH N  LM  +    +V+ +  P AP+ +L VLD T
Sbjct: 224 VLSQAVKRGKREGFDIVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGT 283

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L+Q + F+ V G TG I+TK+DGTARGG ++ +V    IPV F+GVGEG+ DL+P
Sbjct: 284 TGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQP 343

Query: 301 FVAKDFSAVI 310
           F A+ F   I
Sbjct: 344 FDAEAFVEAI 353


>gi|319946576|ref|ZP_08020810.1| cell division protein FtsY [Streptococcus australis ATCC 700641]
 gi|319746624|gb|EFV98883.1| cell division protein FtsY [Streptococcus australis ATCC 700641]
          Length = 556

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 112/257 (43%), Positives = 155/257 (60%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++     VL  V  +I K++    K   ++    F  
Sbjct: 293 IMSDVGVQVASNLTEELRYEARLENAKKPDVLRRV--IIEKLVDLYEKDGQYNEQINFKD 350

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     
Sbjct: 351 GLTVMLFVGVNGVGKTTSIGKLAHKYKKEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 410

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     SD A++ ++  ++A A++VDVL+IDTAGRL N   LMA + K+ R++KR+DP A
Sbjct: 411 VTGPEKSDPASVVFDGMERAVAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPTA 470

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 471 PHETFLALDASTGQNALVQAKEFSKITPITGIVLTKIDGTARGGVVLAIREELDIPVKLI 530

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 531 GFGEKIDDIGEFNSENF 547


>gi|146318841|ref|YP_001198553.1| Signal recognition particle GTPase [Streptococcus suis 05ZYH33]
 gi|146321051|ref|YP_001200762.1| Signal recognition particle GTPase [Streptococcus suis 98HAH33]
 gi|145689647|gb|ABP90153.1| Signal recognition particle GTPase [Streptococcus suis 05ZYH33]
 gi|145691857|gb|ABP92362.1| Signal recognition particle GTPase [Streptococcus suis 98HAH33]
 gi|292558502|gb|ADE31503.1| Cell division transporter substrate-binding protein FtsY
           [Streptococcus suis GZ1]
          Length = 428

 Score =  198 bits (503), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 126/305 (41%), Positives = 179/305 (58%), Gaps = 13/305 (4%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE   + R L K       +L E   +    R +D+   EELE++LI SD+GV VA  + 
Sbjct: 122 SEQDKYQRTLKKTRTGFGARLNEFFANF---RSVDEEFFEELEEMLILSDVGVQVASTLT 178

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH------VILVVGVNG 121
           EEL   RY   +   + + ++  +I + L+ + +  +  FS + +      V+L VGVNG
Sbjct: 179 EEL---RYEAKLQNAKKIDELRRVIIEKLVDIYEK-DGQFSEQINFQDDLTVMLFVGVNG 234

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ K   AG KVML A DTFR+ A+ QL  W  R     V     SD A++
Sbjct: 235 VGKTTSIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGPEKSDPASV 294

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++  K+A A+ VD+L+IDTAGRL N   LMA + K+ R++KR  P APH  L  LDA+T
Sbjct: 295 VFDGVKRAVAEGVDILMIDTAGRLQNKENLMAELEKIGRIIKRTLPDAPHETLLALDAST 354

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + F  +   TGL++TK+DGTA+GG ++ I     IPV  +G GE I+D+  F
Sbjct: 355 GQNALSQAKEFAKITPLTGLVLTKLDGTAKGGVVLAIRQELDIPVKLIGFGEKIDDIGEF 414

Query: 302 VAKDF 306
            +++F
Sbjct: 415 KSEEF 419


>gi|304384765|ref|ZP_07367111.1| cell division protein FtsY [Pediococcus acidilactici DSM 20284]
 gi|304328959|gb|EFL96179.1| cell division protein FtsY [Pediococcus acidilactici DSM 20284]
          Length = 385

 Score =  198 bits (503), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 127/316 (40%), Positives = 185/316 (58%), Gaps = 14/316 (4%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +E+  + R L +   S   KL    T+      +DD   ++LE+ LI +D+G   A +I 
Sbjct: 75  NEAEKYDRGLERSRKSFGQKLSALFTNFSG---VDDDFYDDLEETLIEADVGFDTALEIS 131

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHR-PHVILVVGVN 120
           EE+  +   ++VS       +S+LI + L+ L      ++  +  FS   P V L VGVN
Sbjct: 132 EEVREEIEFENVSDPE---KISQLIVRRLVDLYTRNGSAEDNHLVFSKEGPTVFLFVGVN 188

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++ +    G KV+LAA DTFR+ AI QL+ WA+R   D V  +  SD AA
Sbjct: 189 GVGKTTSIGKMAARFKARGRKVLLAACDTFRAGAIQQLEEWANRDGVDIVTGKEKSDPAA 248

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A+EA K+A+A+  D++ IDTAGRL N   LM  + K+ RV+ R  P AP   L VLD+T
Sbjct: 249 VAFEAVKKAKAENYDLVFIDTAGRLQNKVNLMKELDKIKRVISREIPDAPQESLLVLDST 308

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q + F      TG+I+TK+DGTA+GG ++ I     + V ++G+GE + DL P
Sbjct: 309 TGQNALTQAKAFLETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGEKVEDLSP 368

Query: 301 FVAKDF-SAVITGCLD 315
           F  +++   +  G LD
Sbjct: 369 FNPEEYVRGLFKGLLD 384


>gi|196232645|ref|ZP_03131497.1| signal recognition particle-docking protein FtsY [Chthoniobacter
           flavus Ellin428]
 gi|196223407|gb|EDY17925.1| signal recognition particle-docking protein FtsY [Chthoniobacter
           flavus Ellin428]
          Length = 284

 Score =  198 bits (503), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 119/260 (45%), Positives = 164/260 (63%), Gaps = 1/260 (0%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +ELE+ LIR+D+GV +  +I+  L  +  A+ ++ + V+    E I K+L P        
Sbjct: 21  DELEESLIRADLGVPMMTRIMTALQGREDAEKLTAETVVKVAREEIIKVL-PRDSVTLRP 79

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + +  VILVVGVNG GKTT   KL+  +   G  VMLAA DTFR+AAI+QL +WA+R +
Sbjct: 80  LASKTKVILVVGVNGTGKTTSTAKLAYFLQRKGHSVMLAAADTFRAAAIEQLGVWAERLN 139

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D V  +  SD AAL YEA++ A  K V+ LI DTAGRLH  + LM  +GK+ RVL + D
Sbjct: 140 IDIVKGQYNSDPAALCYEAYQSADRKNVEFLICDTAGRLHTKTNLMGELGKVKRVLAKAD 199

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             APH  L V+DATTG NAL+Q + FHA  G TG+I+TK+DG+ +GG ++ I     IP 
Sbjct: 200 AQAPHETLLVVDATTGGNALQQAKEFHAATGLTGVIVTKLDGSGKGGCVVAIQNELGIPT 259

Query: 287 YFLGVGEGINDLEPFVAKDF 306
            F+G GE + DL  F ++ F
Sbjct: 260 RFIGTGEKMEDLAFFESRQF 279


>gi|56419729|ref|YP_147047.1| signal recognition particle GTPase [Geobacillus kaustophilus
           HTA426]
 gi|56379571|dbj|BAD75479.1| signal recognition particle GTPase (docking protein) [Geobacillus
           kaustophilus HTA426]
          Length = 328

 Score =  198 bits (503), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 185/310 (59%), Gaps = 25/310 (8%)

Query: 13  WIRKLTKGFASTSLKLKEGIT-----------DIISS-RRLDDGVREELEDLLIRSDIGV 60
           W  K TK   + + K KEG++           D+I+  R++D+   EELE++LI +D+GV
Sbjct: 7   WKEKWTKQADAVTEKFKEGLSKTRNSLAGKVNDLIARYRKVDEEFFEELEEILIAADVGV 66

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------- 112
               ++V+EL  +   +++     + DV   I + L+ + +    D              
Sbjct: 67  TTVMELVDELKMEVKRRNIQDPAQMRDV---IAEKLVDIYRA-GADGKELSALNIQEGGL 122

Query: 113 -VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VIL VGVNGVGKTT IGKL+ K+   G  V+LAAGDTFR+ AI+QL+ W +R   D + 
Sbjct: 123 TVILFVGVNGVGKTTTIGKLAHKLKSEGKSVLLAAGDTFRAGAIEQLEAWGERVGVDVIK 182

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              GSD AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV+ R  P APH
Sbjct: 183 QAAGSDPAAVMYDAIQAAKARGVDVLLCDTAGRLQNKVNLMKELEKVKRVISREIPGAPH 242

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            VL VLDATTGQNA+ Q ++F      TG+++TK+DGTA+GG ++ I     IPV  +G+
Sbjct: 243 EVLLVLDATTGQNAMSQAKLFKEATDVTGIVLTKLDGTAKGGIVLAIRNEMAIPVKLVGL 302

Query: 292 GEGINDLEPF 301
           GE ++DL+ F
Sbjct: 303 GEKMDDLQVF 312


>gi|225019242|ref|ZP_03708434.1| hypothetical protein CLOSTMETH_03195 [Clostridium methylpentosum
           DSM 5476]
 gi|224947873|gb|EEG29082.1| hypothetical protein CLOSTMETH_03195 [Clostridium methylpentosum
           DSM 5476]
          Length = 302

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/254 (44%), Positives = 156/254 (61%), Gaps = 8/254 (3%)

Query: 56  SDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           SD+GV  + KI E L   + +R   D S  + L  + E++ +ML   +         +P 
Sbjct: 47  SDVGVNTSMKICETLRKRVKERGITDGSQVKGL--LKEIMTEML---TGGEELKIDTKPS 101

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VILV+GVNGVGKTT IGKL+  +   G +V+L A DTFR+AAIDQL+IWADR     V  
Sbjct: 102 VILVIGVNGVGKTTTIGKLAANLQAQGKQVILGAADTFRAAAIDQLQIWADRAGTKLVKH 161

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             GSD AA+ ++    A+++  DV +IDTAGRLHN   LM  + K+ RV++R        
Sbjct: 162 SEGSDPAAVVFDTLAAAKSRGADVAVIDTAGRLHNKKNLMNELEKISRVIEREAEGCDKE 221

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL VLDATTGQN + Q   F    G TG+++TK+DGTA+GG +I I     +P+ ++GVG
Sbjct: 222 VLLVLDATTGQNGVNQAREFMNTTGLTGIVLTKLDGTAKGGVVIAIKDELGLPIKYIGVG 281

Query: 293 EGINDLEPFVAKDF 306
           E ++DL+PF  + F
Sbjct: 282 EQLDDLQPFEPEAF 295


>gi|270290357|ref|ZP_06196582.1| signal recognition particle receptor [Pediococcus acidilactici 7_4]
 gi|270281138|gb|EFA26971.1| signal recognition particle receptor [Pediococcus acidilactici 7_4]
          Length = 385

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/316 (40%), Positives = 185/316 (58%), Gaps = 14/316 (4%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +E+  + R L +   S   KL    T+      +DD   ++LE+ LI +D+G   A +I 
Sbjct: 75  NEAEKYDRGLERSRKSFGQKLSALFTNFSG---VDDDFYDDLEETLIEADVGFDTALEIS 131

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHR-PHVILVVGVN 120
           EE+  +   ++VS       +S+LI + L+ L      ++  +  FS   P V L VGVN
Sbjct: 132 EEVREEIEFENVSDPE---KISQLIVRRLVDLYTRNGSAEDNHLVFSKEGPTVFLFVGVN 188

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++ +    G KV+LAA DTFR+ AI QL+ WA+R   D V  +  SD AA
Sbjct: 189 GVGKTTSIGKMAARFKARGRKVLLAACDTFRAGAIQQLEEWANRDGVDIVTGKEKSDPAA 248

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A+EA K+A+A+  D++ IDTAGRL N   LM  + K+ RV+ R  P AP   L VLD+T
Sbjct: 249 VAFEAVKKAKAENYDLVFIDTAGRLQNKVNLMKELDKIKRVISREIPDAPQESLLVLDST 308

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q + F      TG+I+TK+DGTA+GG ++ I     + V ++G+GE + DL P
Sbjct: 309 TGQNALTQAKAFLETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGEKVEDLSP 368

Query: 301 FVAKDF-SAVITGCLD 315
           F  +++   +  G LD
Sbjct: 369 FNPEEYVRGLFKGLLD 384


>gi|261207046|ref|ZP_05921735.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium TC 6]
 gi|289565321|ref|ZP_06445771.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium D344SRF]
 gi|294614482|ref|ZP_06694397.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1636]
 gi|260078674|gb|EEW66376.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium TC 6]
 gi|289162811|gb|EFD10661.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium D344SRF]
 gi|291592659|gb|EFF24253.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1636]
          Length = 332

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/194 (50%), Positives = 132/194 (68%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VIL VGVNGVGKTT IGKL+ +  + G KV++AA DTFR+ AIDQL +W +R   + V  
Sbjct: 127 VILFVGVNGVGKTTSIGKLAHQFKNEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRG 186

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G D AA+ ++A ++ + ++ DVL++DTAGRL N   LM  + K+ RV++R  P AP  
Sbjct: 187 NAGGDPAAVVFDALERVKTEQADVLLVDTAGRLQNKVNLMNELEKIKRVIQRELPEAPQE 246

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L VLDATTGQNA+ Q + F      TGL++TK+DGTA+GG ++ I     +PV  +G+G
Sbjct: 247 TLLVLDATTGQNAMVQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELHLPVKLVGLG 306

Query: 293 EGINDLEPFVAKDF 306
           EGI+DLEPF   DF
Sbjct: 307 EGIDDLEPFDPNDF 320


>gi|255655261|ref|ZP_05400670.1| putative signal recognition particle [Clostridium difficile
           QCD-23m63]
 gi|296451246|ref|ZP_06892986.1| cell division protein FtsY [Clostridium difficile NAP08]
 gi|296880402|ref|ZP_06904365.1| cell division protein FtsY [Clostridium difficile NAP07]
 gi|296259852|gb|EFH06707.1| cell division protein FtsY [Clostridium difficile NAP08]
 gi|296428643|gb|EFH14527.1| cell division protein FtsY [Clostridium difficile NAP07]
          Length = 423

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 114/258 (44%), Positives = 166/258 (64%), Gaps = 3/258 (1%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+GV     I+E L  K   K +    +V  ++  ++  +L   ++    D    P +I
Sbjct: 167 ADVGVNTTMDIIERLRDKIKQKGIIEPIKVREELKSIVEDILT--NENSTLDIEPAPCII 224

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNGVGKTT IGKL+ +    G KV+LAA DTFR+AA +QL+IWA+RT+ D +  + 
Sbjct: 225 LMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQE 284

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D  A+ ++A K A+A+K DVLI DTAGRLHN + LM  +GK+ +++ R  P A   VL
Sbjct: 285 GADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVL 344

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DATTGQNA+ Q + F  VA  TG+++TK+DGTA+GG ++ +     +PV  +GVGE 
Sbjct: 345 LVVDATTGQNAVIQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGES 404

Query: 295 INDLEPFVAKDFSAVITG 312
           + DL+ F AK FS  + G
Sbjct: 405 VEDLQDFNAKSFSDALFG 422


>gi|116490533|ref|YP_810077.1| signal recognition particle-docking protein FtsY [Oenococcus oeni
           PSU-1]
 gi|116091258|gb|ABJ56412.1| signal recognition particle-docking protein FtsY [Oenococcus oeni
           PSU-1]
          Length = 382

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 109/261 (41%), Positives = 159/261 (60%), Gaps = 9/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH--- 109
           LI +D+G  +A KI  EL  +   K+ S ++ + +   +I K++    +  N + +    
Sbjct: 115 LIAADVGFEMALKISNELQDEVRLKNASSKKDVQNT--IIEKLVNVYDQAGNGENNEMLF 172

Query: 110 ----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               +P V L VGVNGVGKTT IGK++      G KV+LAA DTFR+ A +QL  WA R 
Sbjct: 173 AEAGQPSVFLFVGVNGVGKTTTIGKMASFYKKQGKKVLLAAADTFRAGATEQLVEWAHRD 232

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             D V  +  SD A++ ++  K++     D+L +DTAGRL NN  LM  + KM +++ R 
Sbjct: 233 QVDVVTGKEKSDPASVVFDGVKKSIDGHYDILFVDTAGRLQNNDNLMRELEKMKKIITRQ 292

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P+AP  VL VLDATTGQNAL+Q  +F      TGL++TK+DGTA+GG ++ I     +P
Sbjct: 293 LPNAPQEVLLVLDATTGQNALQQARLFKDSTDVTGLVLTKLDGTAKGGIVLAIRQELHLP 352

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           V ++G+GE ++DLEPF A +F
Sbjct: 353 VKWVGLGEKVDDLEPFNADEF 373


>gi|297620664|ref|YP_003708801.1| cell division protein FtsY [Waddlia chondrophila WSU 86-1044]
 gi|297375965|gb|ADI37795.1| cell division protein FtsY [Waddlia chondrophila WSU 86-1044]
          Length = 307

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/302 (40%), Positives = 183/302 (60%), Gaps = 7/302 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---VE 68
           S   K+    + T   L E +  + S + +D+   E+LE L   +D+G+  + ++   V+
Sbjct: 8   SSFEKVKNALSKTRSALGEKLRSLFSGK-IDEETLEQLEQLFYEADLGIQASVELTAKVK 66

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           E+   R   ++  + ++ ++ + I + L  +S     +    P VILVVGVNG GKTT +
Sbjct: 67  EIY--RKNPNLDAEGLIVEMKKEIEQSLSKISAEMAEN-PDPPTVILVVGVNGNGKTTTV 123

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+K+  DAG KV++AA DT+R+AA+ QL++W  R  +D V     SDAAA+A++A   
Sbjct: 124 AKLAKRYQDAGKKVLIAAADTYRAAAVAQLEVWTSRIGSDLVKGAPNSDAAAVAFDAMTA 183

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+  DV++IDTAGRLH    LM  + K+ RV  ++ P +PH  L VLDAT GQNA+ Q
Sbjct: 184 AKARGADVVLIDTAGRLHTRKDLMQELEKIKRVCNKVMPGSPHETLLVLDATIGQNAIDQ 243

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++FH     +GL +TK+DGTA+GG +I I     IPV F+GVGE ++DLEPF    FS 
Sbjct: 244 AKIFHEYTPISGLCLTKLDGTAKGGVVINIQKQLGIPVKFIGVGETLSDLEPFNPAHFSQ 303

Query: 309 VI 310
            +
Sbjct: 304 AL 305


>gi|253751926|ref|YP_003025067.1| cell division protein FtsY [Streptococcus suis SC84]
 gi|253753749|ref|YP_003026890.1| cell division protein FtsY [Streptococcus suis P1/7]
 gi|253755373|ref|YP_003028513.1| cell division protein FtsY [Streptococcus suis BM407]
 gi|251816215|emb|CAZ51842.1| putative cell division protein FtsY [Streptococcus suis SC84]
 gi|251817837|emb|CAZ55590.1| putative cell division protein FtsY [Streptococcus suis BM407]
 gi|251819995|emb|CAR46155.1| putative cell division protein FtsY [Streptococcus suis P1/7]
 gi|319758288|gb|ADV70230.1| Signal recognition particle GTPase [Streptococcus suis JS14]
          Length = 424

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/305 (41%), Positives = 179/305 (58%), Gaps = 13/305 (4%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE   + R L K       +L E   +    R +D+   EELE++LI SD+GV VA  + 
Sbjct: 118 SEQDKYQRTLKKTRTGFGARLNEFFANF---RSVDEEFFEELEEMLILSDVGVQVASTLT 174

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH------VILVVGVNG 121
           EEL   RY   +   + + ++  +I + L+ + +  +  FS + +      V+L VGVNG
Sbjct: 175 EEL---RYEAKLQNAKKIDELRRVIIEKLVDIYEK-DGQFSEQINFQDDLTVMLFVGVNG 230

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ K   AG KVML A DTFR+ A+ QL  W  R     V     SD A++
Sbjct: 231 VGKTTSIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGPEKSDPASV 290

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++  K+A A+ VD+L+IDTAGRL N   LMA + K+ R++KR  P APH  L  LDA+T
Sbjct: 291 VFDGVKRAVAEGVDILMIDTAGRLQNKENLMAELEKIGRIIKRTLPDAPHETLLALDAST 350

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + F  +   TGL++TK+DGTA+GG ++ I     IPV  +G GE I+D+  F
Sbjct: 351 GQNALSQAKEFAKITPLTGLVLTKLDGTAKGGVVLAIRQELDIPVKLIGFGEKIDDIGEF 410

Query: 302 VAKDF 306
            +++F
Sbjct: 411 KSEEF 415


>gi|312864560|ref|ZP_07724791.1| signal recognition particle-docking protein FtsY [Streptococcus
           downei F0415]
 gi|311099687|gb|EFQ57900.1| signal recognition particle-docking protein FtsY [Streptococcus
           downei F0415]
          Length = 561

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/260 (43%), Positives = 160/260 (61%), Gaps = 8/260 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNW----D 106
           +LI SD+GV VA  + EEL   RY   +   +   DV  + I K++    K   +    +
Sbjct: 296 MLILSDVGVQVATNLTEEL---RYEVKLENAKKTEDVRRVVIEKLVDIYEKDGQFKETIN 352

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           F     V+L VGVNGVGKTT IGKL+ K  + G KVML A DTFR+ A+ QL+ W +R  
Sbjct: 353 FQDGLTVMLFVGVNGVGKTTSIGKLAYKYKNQGKKVMLVAADTFRAGAVAQLQEWGNRVG 412

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D A++ ++  ++A A+ VD+L+IDTAGRL N   LMA + K+ R++KR+ 
Sbjct: 413 VPVITGPEKADPASVVFDGMEKAVAQGVDILMIDTAGRLQNKENLMAELEKIGRIVKRVL 472

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH  L  LDA+TGQNAL Q + F  +   TGL++TK+DGTA+GG ++ I     IPV
Sbjct: 473 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLVLTKIDGTAKGGIVLAIRQELDIPV 532

Query: 287 YFLGVGEGINDLEPFVAKDF 306
            F+G GE I+D+  F +++F
Sbjct: 533 KFIGFGEKIDDIGEFHSEEF 552


>gi|307709476|ref|ZP_07645933.1| signal recognition particle-docking protein FtsY [Streptococcus
           mitis SK564]
 gi|307619790|gb|EFN98909.1| signal recognition particle-docking protein FtsY [Streptococcus
           mitis SK564]
          Length = 427

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N+D    F  
Sbjct: 164 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDERIHFQE 221

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 222 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 281

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 282 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 341

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 342 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 401

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE IND+  F +++F
Sbjct: 402 GFGEKINDIGEFNSENF 418


>gi|251772246|gb|EES52816.1| Cell division protein (FtsY) [Leptospirillum ferrodiazotrophum]
          Length = 303

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/297 (41%), Positives = 180/297 (60%), Gaps = 3/297 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  K+ +G   T  K+   I  + + R  D G  +ELE++LI +D+G  V+++IVEEL
Sbjct: 1   MGFFDKIREGLQKTRDKVARSIESVFNRR--DPGFYQELEEILISADVGPVVSKEIVEEL 58

Query: 71  LT-KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              ++     +    L  +   +  +  P S       S  P V+L+VGVNGVGKTT  G
Sbjct: 59  KAWEKTNPGATADESLAHLESSLTAIFTPASPWEESSPSKSPMVVLLVGVNGVGKTTTAG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +  DAG  V+L A DTFR+AAI+QL+ W +R     V  + G+D A++A++  + A
Sbjct: 119 KLAARFRDAGNSVILGAADTFRAAAIEQLRKWGERLDIPVVHQKPGADPASVAFDTVRAA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+ IIDTAGRL N   LM  + K+  ++ R  P +P  VL VLDAT GQNAL Q+
Sbjct: 179 RARGIDMAIIDTAGRLQNKQNLMNELRKIGAIIHREAPDSPVEVLLVLDATIGQNALSQL 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F  +A  +GL++TK+DGT+RGG +I +   HKIPV F+GVGE  +DL PF    F
Sbjct: 239 DEFVKIAPVSGLVLTKLDGTSRGGVVIALARRHKIPVRFIGVGEKTDDLLPFDPSTF 295


>gi|255541488|ref|XP_002511808.1| cell division protein ftsy, putative [Ricinus communis]
 gi|223548988|gb|EEF50477.1| cell division protein ftsy, putative [Ricinus communis]
          Length = 362

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/271 (40%), Positives = 169/271 (62%), Gaps = 3/271 (1%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK 101
           D + +ELE++L+ SD G  +   IVE L     +  +     + D + + + ++L+    
Sbjct: 90  DKILDELEEILLVSDFGPRITINIVESLRKDILSGKLKSGSEIKDALKKSVLQLLINKGN 149

Query: 102 PFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
             +     R P VI++VGVNG GKTT +GKL+ ++ + G K+++AAGDTFR+AA DQL+I
Sbjct: 150 KTDLQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEI 209

Query: 161 WADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           WA+RT  + V +E   + A+++  +A K+ + +  DV++ DT+GRLH N  LM  +    
Sbjct: 210 WAERTGCEIVVAEKEKAKASSVLSQAIKRGKEQGFDVVLCDTSGRLHTNYSLMEELIACK 269

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           + + ++ P AP+ +L VLD  TG N L Q   F+ V G TGLI+TK+DG+ARGG ++ +V
Sbjct: 270 KAIGKVVPGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVV 329

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
               IPV F+GVGEG+ DL+PF A+ F   I
Sbjct: 330 DELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 360


>gi|89900462|ref|YP_522933.1| signal recognition particle-docking protein FtsY [Rhodoferax
           ferrireducens T118]
 gi|89345199|gb|ABD69402.1| signal recognition particle-docking protein FtsY [Rhodoferax
           ferrireducens T118]
          Length = 364

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/315 (40%), Positives = 186/315 (59%), Gaps = 16/315 (5%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V  E   W+ KL  G   T+      I+ + S  R+D+ + EELE  L+ +D GVA  Q 
Sbjct: 54  VPPERQKWLDKLKAGLGKTA----NSISGVFSGTRIDEALYEELEGALLMADTGVAATQY 109

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVG 123
           ++++L  +R  K+  +   +   + L+  +   L           H+P VI+V GVNG G
Sbjct: 110 LLDDL--RRKVKESGITHPVALKNILVASLTELLLPLEKPLVIGQHKPTVIMVTGVNGAG 167

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--TSADF------VCSEIG 175
           KTT IGKL++ ++  G  V+LAA DTFR+AA +QL +WA R  TS D       + S+ G
Sbjct: 168 KTTSIGKLTQHLAMHGASVLLAAADTFRAAAREQLGVWATRAGTSTDTPDHSVEIISQQG 227

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D AA++++A    +A+  DV+++DTAGRL     LM  + K+ RV+++ D  APH +L 
Sbjct: 228 GDPAAVSFDAVSAGKARGKDVVLVDTAGRLPTQLHLMEELRKIKRVVQKADATAPHEILL 287

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+D  TGQNAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE +
Sbjct: 288 VIDGNTGQNALTQVKAFDEALGLTGLIVTKLDGTAKGGVLAAIARERPVPVYFIGVGEQL 347

Query: 296 NDLEPFVAKDFSAVI 310
            DLE F A++F+  +
Sbjct: 348 EDLETFNAREFAQAL 362


>gi|168210652|ref|ZP_02636277.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens B str. ATCC 3626]
 gi|168217002|ref|ZP_02642627.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens NCTC 8239]
 gi|170711266|gb|EDT23448.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens B str. ATCC 3626]
 gi|182380866|gb|EDT78345.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens NCTC 8239]
          Length = 304

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/294 (43%), Positives = 181/294 (61%), Gaps = 3/294 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73
           KL  G   T   L + I + ++ +  +DD + EELE+ LI SDIG+    +I++ L  K 
Sbjct: 8   KLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTVEIIDRLKAKI 67

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           R  K   V+ V   + E+I +M++               V+L++GVNGVGKTT IGK++ 
Sbjct: 68  RKEKINDVEMVKPALKEVIAEMMLEGDSEEEE-DDKEKKVMLIIGVNGVGKTTSIGKIAA 126

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +  + G KV+LAA DTFR+AAIDQL IW+ R + D V  + GSD AA+ ++A + A+A+ 
Sbjct: 127 RNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKARD 186

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           VD+LI DTAGRLHN   LM  + K+ R++ R         L VLD TTGQNA+ Q + F 
Sbjct: 187 VDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQFM 246

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 G+I+TK+DGTA+GG +I I  T  IPV ++GVGEG+ DL+ F AK+F+
Sbjct: 247 EACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVEDLQKFNAKEFA 300


>gi|19745687|ref|NP_606823.1| signal recognition particle (docking protein) [Streptococcus
           pyogenes MGAS8232]
 gi|19747821|gb|AAL97322.1| putative signal recognition particle (docking protein)
           [Streptococcus pyogenes MGAS8232]
          Length = 516

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/272 (43%), Positives = 168/272 (61%), Gaps = 6/272 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           RR+D+   EELE++LI SD+GV VA  + EEL  +   ++      L  V  ++ K++  
Sbjct: 238 RRVDEEFFEELEEMLILSDVGVHVATTLTEELRYEAKLENAKKPDALKRV--IVEKLVGI 295

Query: 99  LSKP--FNWDFSHRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
             K   +N   +++    V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A
Sbjct: 296 YEKDGRYNEAINYQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGA 355

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           + QL  W  R     +     +D A++ ++  ++A AK VD+L+IDTAGRL N   LMA 
Sbjct: 356 VAQLVEWGRRVDVPVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAE 415

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + KM R++KR+ P APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG 
Sbjct: 416 LEKMGRIIKRVLPDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGV 475

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++ I     IPV F+G GE ++D+  F ++DF
Sbjct: 476 VLAIRQELDIPVKFIGFGEKVDDIGEFHSEDF 507


>gi|222152727|ref|YP_002561904.1| cell division protein FtsY [Streptococcus uberis 0140J]
 gi|222113540|emb|CAR41334.1| putative cell division protein FtsY [Streptococcus uberis 0140J]
          Length = 485

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/259 (44%), Positives = 160/259 (61%), Gaps = 6/259 (2%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNW--DF 107
           +LI SD+GV+VA ++ EEL  +   ++      L  V  +I K++    K   FN   + 
Sbjct: 220 MLILSDVGVSVATELTEELRQEAKLENAKKPDDLKRV--IIEKLVDIYEKDGTFNEAINL 277

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
                V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  WA R   
Sbjct: 278 QEGLTVMLFVGVNGVGKTTSIGKLAYRYKAEGKKVMLVAADTFRAGAVAQLAEWARRVDV 337

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V     +D A++ ++  ++A A+ VD+L+IDTAGRL N   LMA + KM R++KR+ P
Sbjct: 338 PVVMGAEKADPASVVFDGVEKAVAQGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVIP 397

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I    +IPV 
Sbjct: 398 DAPHETLLALDASTGQNALSQAKEFSKILPLTGLILTKIDGTAKGGVVLAIRQELEIPVK 457

Query: 288 FLGVGEGINDLEPFVAKDF 306
           F+G GE I+D+  F ++DF
Sbjct: 458 FIGFGEKIDDIGEFDSEDF 476


>gi|290580784|ref|YP_003485176.1| putative cell division protein [Streptococcus mutans NN2025]
 gi|254997683|dbj|BAH88284.1| putative cell division protein [Streptococcus mutans NN2025]
          Length = 498

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 116/259 (44%), Positives = 156/259 (60%), Gaps = 6/259 (2%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNW--DF 107
           +LI SD+GV VA  + E+L  +   +       L  V  +I K++    K   FN   +F
Sbjct: 233 MLILSDVGVQVASTLTEDLRYEAKLEKAKKPEALRRV--IIEKLVDIYDKDGQFNEKINF 290

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R   
Sbjct: 291 QNDLTVMLFVGVNGVGKTTSIGKLAYKYKHQGKKVMLVAADTFRAGAVAQLAEWGRRVDV 350

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V     +D A++ Y+  ++A A  VD+L+IDTAGRL N   LMA + K+ RV+KR+ P
Sbjct: 351 PVVTGPKNADPASVVYDGVERAVAADVDILMIDTAGRLQNKDNLMAELEKIGRVVKRVIP 410

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV 
Sbjct: 411 DAPHETLLTLDASTGQNALVQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELAIPVK 470

Query: 288 FLGVGEGINDLEPFVAKDF 306
           F+G GE I+D+  F ++DF
Sbjct: 471 FIGFGEKIDDIGEFHSEDF 489


>gi|218887338|ref|YP_002436659.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758292|gb|ACL09191.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 464

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/299 (40%), Positives = 177/299 (59%), Gaps = 3/299 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KLT+G A T  ++   I  +++S  R+D    EELE++LI +D+G   A ++   L  + 
Sbjct: 158 KLTEGLARTREQITGRIDALLASHGRIDAKFWEELEEILIMADVGFEPAMQLTGRLKERA 217

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                       D+  L  ++      P        P V+L++GVNGVGKTT I KL+ +
Sbjct: 218 RKAGTDDPAAFRDL--LREELQDIFRAPRRIAAVTPPEVVLMIGVNGVGKTTTIAKLAHR 275

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G KV++AA DTFR+AAI+QL++WA R  ADF     GSD AA+A+EA   A A   
Sbjct: 276 ARMQGKKVLIAAADTFRAAAIEQLEVWAKRVGADFHAKSAGSDPAAVAFEAMDVALAGGY 335

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++ +DTAGRLH    LM  + K+ R+L+R  P APH  + V+DATTGQNAL Q ++F+ 
Sbjct: 336 DIVFVDTAGRLHTKVNLMEELHKIRRILERKHPGAPHRSILVIDATTGQNALSQTKLFNE 395

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             G   +++TK+DGTA+GG ++ + +   IP+ F+G+GE + DL PF   DF+  + G 
Sbjct: 396 ACGVDEIVLTKLDGTAKGGIVVAVAMQFGIPITFVGLGEKMEDLRPFDGGDFALALLGV 454


>gi|291320132|ref|YP_003515390.1| cell division protein FtsY [Mycoplasma agalactiae]
 gi|290752461|emb|CBH40433.1| Cell division protein FtsY [Mycoplasma agalactiae]
          Length = 354

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/289 (38%), Positives = 176/289 (60%), Gaps = 11/289 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-HKMLM 97
           +++D+   +ELE++LI SDI   +   I+  +  +   ++++  +   D+ ELI  +M +
Sbjct: 69  KKIDEEYFDELEEILIMSDISAKLVYAIITHIKNEVKIRELTNTK---DIGELIADQMFV 125

Query: 98  PLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
             +     D +      R ++++ +GVNG GKTT I K++ K    G KV++AA DTFR+
Sbjct: 126 VYTNKSVVDTTLNVEDERLNILIFIGVNGSGKTTSIAKVAHKYIKEGKKVLIAAADTFRA 185

Query: 153 AAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            A+DQ+ IW++R  AD V   + G+D A++ Y A ++A+A+  D+L+IDTAGRL N   L
Sbjct: 186 GAVDQIAIWSERVGADIVKPIKEGADPASVVYSALEKAKAENYDLLLIDTAGRLQNKINL 245

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + KM  ++ +    APH  L VLDATTGQN + Q + F  VA  TG+I+TKMDGT++
Sbjct: 246 MNELKKMYSIINKFQEDAPHECLLVLDATTGQNGVSQAKAFSEVANPTGIILTKMDGTSK 305

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL-DYGEE 319
           GG ++ I     I V +LG+GEG++DL+ F   +F   +T  L D  EE
Sbjct: 306 GGIVLSIKDEFNINVKYLGLGEGLDDLQEFDLDNFIYEMTKDLIDKNEE 354


>gi|205373343|ref|ZP_03226147.1| signal recognition particle-docking protein FtsY [Bacillus
           coahuilensis m4-4]
          Length = 282

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/273 (41%), Positives = 170/273 (62%), Gaps = 15/273 (5%)

Query: 56  SDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHR 110
           +D+G     ++V+EL   + +R  +D +      DV  +I + L+ + +    N + S +
Sbjct: 16  ADVGFNTVMELVDELRMEVKRRNIQDTA------DVQSVISEKLVEIYQGDEGNSELSIQ 69

Query: 111 PH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            +   VIL VGVNGVGKTT IGK++    + G  V+LAAGDTFR+ AI+QL+ W DR   
Sbjct: 70  ENDLTVILFVGVNGVGKTTTIGKMAHHFKEQGKSVVLAAGDTFRAGAIEQLEAWGDRVGV 129

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V    GSD AA+ Y+A + A+++K D+L+ DTAGRL N   LM  + K+ RV++R  P
Sbjct: 130 PVVKQSEGSDPAAVMYDAVQAAKSRKADILLCDTAGRLQNKVNLMKELEKVKRVIEREVP 189

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            APH VL VLDATTGQNAL Q ++F      +G+++TK+DGTA+GG ++ I    +IPV 
Sbjct: 190 GAPHEVLLVLDATTGQNALVQAKVFKEATDVSGIVLTKLDGTAKGGIVLAIRNELQIPVK 249

Query: 288 FLGVGEGINDLEPFVAKDF-SAVITGCLDYGEE 319
           F+G+GE ++DL+ F  + +   + +  +D  EE
Sbjct: 250 FVGLGEKMDDLQSFDPEKYVYGLFSELVDQAEE 282


>gi|229092889|ref|ZP_04224023.1| Cell division protein ftsY [Bacillus cereus Rock3-42]
 gi|228690511|gb|EEL44294.1| Cell division protein ftsY [Bacillus cereus Rock3-42]
          Length = 260

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/227 (44%), Positives = 148/227 (65%), Gaps = 8/227 (3%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPH-------VILVVGVNGVGKTTVIGKLSKKMSDAG 139
           +V  +I + L+ + K  + DF++  +       V+L VGVNGVGKTT IGK++ K    G
Sbjct: 21  EVQAVISEKLIEIYKG-DSDFTNEVNMQKEGLTVVLFVGVNGVGKTTTIGKMAHKFKSEG 79

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+LAAGDTFR+ AI+QL++W DR   + +    GSD AA+ Y+A + A+A+ VDVL+ 
Sbjct: 80  KSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDPAAVMYDAVQAAKARNVDVLLC 139

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQN L Q + F      T
Sbjct: 140 DTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVIDATTGQNGLSQAKTFREATNVT 199

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL+ F  + +
Sbjct: 200 GIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDLQQFDPEQY 246


>gi|24379207|ref|NP_721162.1| putative cell division protein FtsY; signal recognition particle
           (docking protein) [Streptococcus mutans UA159]
 gi|24377118|gb|AAN58468.1|AE014916_9 putative cell division protein FtsY; signal recognition particle
           (docking protein) [Streptococcus mutans UA159]
          Length = 498

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 116/259 (44%), Positives = 156/259 (60%), Gaps = 6/259 (2%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNW--DF 107
           +LI SD+GV VA  + E+L  +   +       L  V  +I K++    K   FN   +F
Sbjct: 233 MLILSDVGVQVASTLTEDLRYEAKLEKAKKPEALRRV--IIEKLVDIYDKDGQFNEKINF 290

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            +   V+L VGVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R   
Sbjct: 291 QNDLTVMLFVGVNGVGKTTSIGKLAYKYKHQGKKVMLVAADTFRAGAVAQLAEWGRRVDV 350

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V     +D A++ Y+  ++A A  VD+L+IDTAGRL N   LMA + K+ RV+KR+ P
Sbjct: 351 PVVTGPKNADPASVVYDGVERAVAADVDILMIDTAGRLQNKDNLMAELEKIGRVVKRVIP 410

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV 
Sbjct: 411 DAPHETLLTLDASTGQNALVQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELAIPVK 470

Query: 288 FLGVGEGINDLEPFVAKDF 306
           F+G GE I+D+  F ++DF
Sbjct: 471 FIGFGEKIDDIGEFHSEDF 489


>gi|295425201|ref|ZP_06817904.1| cell division protein FtsY [Lactobacillus amylolyticus DSM 11664]
 gi|295064977|gb|EFG55882.1| cell division protein FtsY [Lactobacillus amylolyticus DSM 11664]
          Length = 403

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/259 (39%), Positives = 155/259 (59%), Gaps = 5/259 (1%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           I SD+G   A+++ +EL     L K   +D   + ++  + EL  +      +  N++  
Sbjct: 137 IESDVGYETAEELTDELRDEAKLQKAKTRDQLKEVIVQKLVELYDQNGNADDEKLNYNPD 196

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           H+P++ L VGVNG GKTT IGKL+K+  D G KV+LAA DTFR+ A++QL+ W  R    
Sbjct: 197 HKPNIYLFVGVNGAGKTTTIGKLAKRFKDQGKKVILAAADTFRAGAVEQLEEWGRRVDVP 256

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     +D A++ Y+A KQA   + D L++DTAGRL N   LM+ + K+ R +K+L P 
Sbjct: 257 VVTGAEKADPASVVYDATKQAIDGQADYLLVDTAGRLQNKKNLMSELEKIQRTIKKLAPE 316

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I    K+PV  
Sbjct: 317 QPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMKLPVKL 376

Query: 289 LGVGEGINDLEPFVAKDFS 307
           +G+GE   DL  F A +++
Sbjct: 377 VGLGEKPEDLADFDAANYA 395


>gi|148269493|ref|YP_001243953.1| signal recognition particle-docking protein FtsY [Thermotoga
           petrophila RKU-1]
 gi|147735037|gb|ABQ46377.1| signal recognition particle-docking protein FtsY [Thermotoga
           petrophila RKU-1]
          Length = 294

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/294 (43%), Positives = 176/294 (59%), Gaps = 9/294 (3%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L KG   T       +  ++  ++LDD  REELE+LLI++D+GV   + I+E L  K   
Sbjct: 7   LKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERLKEKDGD 66

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
              S++ ++ ++     K+ +P   PF         VI VVGVNG GKTT  GKL+K   
Sbjct: 67  ALESLKEIILEILNFDTKLNVPPEPPF---------VITVVGVNGTGKTTSCGKLAKMFV 117

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           D G  V+LAA DTFR+AAI+QLKIW +R  A  +    G+D AA+A++A   A A+  DV
Sbjct: 118 DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDV 177

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +IIDTAGRLH    LM  + K+ RV+K+  P APH  L V+DATTGQN L Q ++F    
Sbjct: 178 VIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV 237

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
             TG+I+TK+DGTA+GG  + I     IP+ F+GVGE   DL PF  + F  V+
Sbjct: 238 DVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVL 291


>gi|227890256|ref|ZP_04008061.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849070|gb|EEJ59156.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii
           ATCC 33200]
          Length = 442

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/274 (37%), Positives = 165/274 (60%), Gaps = 5/274 (1%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIH 93
           R +D+   ++LEDLLI SD+G   A+++ + L     L    + D   Q ++  + ++  
Sbjct: 161 RTVDENFFDDLEDLLIESDVGFETAEELTDSLRDEAKLQNAKSHDALKQVIVEKLVDIYD 220

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K           D S +P+V L VGVNG GKTT IGKL+K++ D+G  VM+ A DTFR+ 
Sbjct: 221 KGGEGEDSKLADDPSAKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAG 280

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++QL  W  R   + +     +D A++ Y+  K+A+ + +D L++DTAGRL N   LM+
Sbjct: 281 AVEQLVEWGRRDGVEVITGPEKADPASVVYDGVKKAKERGIDFLLVDTAGRLQNKVNLMS 340

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ R +K++ P  P+ VL VLD +TGQNAL Q + F      TGL++TK+DG+++GG
Sbjct: 341 ELDKIKRTIKKILPDQPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGG 400

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            ++ I     +PV  +G+GE ++DL  F A+ F+
Sbjct: 401 VVLAIRNEMDLPVKLVGLGEKVDDLANFDAEKFA 434


>gi|332526542|ref|ZP_08402654.1| signal recognition particle-docking protein FtsY [Rubrivivax
           benzoatilyticus JA2]
 gi|332110810|gb|EGJ10987.1| signal recognition particle-docking protein FtsY [Rubrivivax
           benzoatilyticus JA2]
          Length = 373

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/313 (39%), Positives = 186/313 (59%), Gaps = 12/313 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           VA     W+ +L  G   T       IT + +  ++DD + E+LE  L+ +D GV   Q 
Sbjct: 67  VAEPRSRWLDRLKLGLRKTG----SSITQVFTGTKIDDALYEDLESALLVADAGVGATQY 122

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++++L  + + AK      V   +++ + ++L PL KP        P V++V GVNG GK
Sbjct: 123 LLQDLKRRVKEAKATEPAVVKALLADAVAELLAPLQKPLVIG-QQTPTVVMVAGVNGAGK 181

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL++ ++++  +V+LAA DTFR+AA +QL +WADR   + V S+ G D AA++++
Sbjct: 182 TTTIGKLTRHLAESDRRVLLAAADTFRAAAREQLAVWADRNRVEIV-SQQGGDPAAVSFD 240

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A    +A+  DV+I DTAGRL     LM  + K+ R + +    APH VL V+D  TGQN
Sbjct: 241 AVTAGRARGCDVVIADTAGRLPTQLHLMDELKKIKRTIGKAQEGAPHEVLLVIDGNTGQN 300

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV-----VTHKIPVYFLGVGEGINDLE 299
           AL QV+ F A  G TGLI+TK+DGTA+GG L  I          +PVYF+GVGE + DL+
Sbjct: 301 ALAQVKAFDAALGLTGLIVTKLDGTAKGGVLAAIARWCAEQGRVVPVYFIGVGERLEDLQ 360

Query: 300 PFVAKDFSAVITG 312
            F A++F+  + G
Sbjct: 361 TFDAREFANALLG 373


>gi|326318567|ref|YP_004236239.1| signal recognition particle-docking protein FtsY [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375403|gb|ADX47672.1| signal recognition particle-docking protein FtsY [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 431

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/307 (40%), Positives = 182/307 (59%), Gaps = 7/307 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +   E   W+ +L  G   T       I  + +  ++ D + +ELE+ L+ +D GV   +
Sbjct: 129 EAGQERKGWLDRLKNGLRKTGTS----IATVFTGTQISDALYDELEEALLMADTGVKATE 184

Query: 65  KIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++++L  + + A+      V   +++ +  +L PL KP      H P VI+V GVNG G
Sbjct: 185 HLLQDLRQRVKEARATDPAAVKGLLADALADLLRPLEKPLEIG-RHTPTVIMVAGVNGAG 243

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL++ ++  G  V+LAA DTFR+AA +QL +WADR + + V  E G D AA+++
Sbjct: 244 KTTSIGKLTRHLATEGAAVLLAAADTFRAAAREQLGVWADRNTVEIVSQE-GGDPAAVSF 302

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A    +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQ
Sbjct: 303 DAVSAGKARGKDVVLVDTAGRLPTQLHLMQELQKIKRVITKADGTAPHEVLLVIDGNTGQ 362

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV  F      TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DLE F A
Sbjct: 363 NALAQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKLEDLETFSA 422

Query: 304 KDFSAVI 310
           ++F+  +
Sbjct: 423 REFAQAL 429


>gi|268319232|ref|YP_003292888.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii
           FI9785]
 gi|262397607|emb|CAX66621.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii
           FI9785]
          Length = 442

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/274 (37%), Positives = 165/274 (60%), Gaps = 5/274 (1%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIH 93
           R +D+   ++LEDLLI SD+G   A+++ + L     L    + D   Q ++  + ++  
Sbjct: 161 RTVDENFFDDLEDLLIESDVGFETAEELTDSLRDEAKLQNAKSHDALKQVIVEKLVDIYD 220

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K           D S +P+V L VGVNG GKTT IGKL+K++ D+G  VM+ A DTFR+ 
Sbjct: 221 KGGEGEDSKLADDPSAKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAG 280

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++QL  W  R   + +     +D A++ Y+  K+A+ + +D L++DTAGRL N   LM+
Sbjct: 281 AVEQLVEWGRRDGVEVITGPEKADPASVVYDGVKKAKERGIDFLLVDTAGRLQNKVNLMS 340

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ R +K++ P  P+ VL VLD +TGQNAL Q + F      TGL++TK+DG+++GG
Sbjct: 341 ELDKIKRTIKKILPDQPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGG 400

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            ++ I     +PV  +G+GE ++DL  F A+ F+
Sbjct: 401 VVLAIRNEMDLPVKLVGLGEKVDDLANFDAEKFA 434


>gi|193213473|ref|YP_001999426.1| signal recognition particle-docking protein FtsY [Chlorobaculum
           parvum NCIB 8327]
 gi|193086950|gb|ACF12226.1| signal recognition particle-docking protein FtsY [Chlorobaculum
           parvum NCIB 8327]
          Length = 320

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/299 (40%), Positives = 180/299 (60%), Gaps = 6/299 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + +L +G   T   LKE +  +   +  +DD   EELE++L+ +D+GV     IV+ +  
Sbjct: 9   LSRLKEGLTKTRDTLKEKLAVVTKGKTEVDDEFLEELENILVAADVGVETTLDIVDAVTE 68

Query: 73  KRYAK-----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +   K     D   + V+ ++  L+ +        F+   S +P+VI++VGVNG GKTT 
Sbjct: 69  RSKGKTYRSEDELNEMVMGEIRNLLVESGHEHPVDFDAPLSAKPYVIMIVGVNGAGKTTS 128

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           + KL+     AG KV++AA DTFR+AA +QLKIWADR     +    G+D A++ +++  
Sbjct: 129 VAKLAHNYDKAGKKVVIAAADTFRAAAYEQLKIWADRAGVPIIGQGQGADPASVVFDSVS 188

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A +K  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQNA++
Sbjct: 189 SAVSKGTDVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPDAPHEVLLVLDGTTGQNAVQ 248

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q   F      TGLI+TK+DGT++GG ++ I     +PV ++GVGE I+DL+ F    F
Sbjct: 249 QAREFTRFVNVTGLIVTKLDGTSKGGIVLSISRELNLPVKYIGVGEKIDDLQLFDRASF 307


>gi|94988095|ref|YP_596196.1| cell division protein [Streptococcus pyogenes MGAS9429]
 gi|94991982|ref|YP_600081.1| cell division protein ftsY [Streptococcus pyogenes MGAS2096]
 gi|94541603|gb|ABF31652.1| cell division protein [Streptococcus pyogenes MGAS9429]
 gi|94545490|gb|ABF35537.1| Cell division protein ftsY [Streptococcus pyogenes MGAS2096]
          Length = 516

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/260 (42%), Positives = 160/260 (61%), Gaps = 8/260 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFS 108
           +LI SD+GV VA  + EEL   RY   +   +    +  +I + L+ + +    +N   +
Sbjct: 251 MLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAIN 307

Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           ++    V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R  
Sbjct: 308 YQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVD 367

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D A++ ++  ++A AK+VD+L+IDTAGRL N   LMA + KM R++KR+ 
Sbjct: 368 VPVITGPEKADPASVVFDGMEKAVAKEVDILLIDTAGRLQNKENLMAELEKMGRIIKRVL 427

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV
Sbjct: 428 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPV 487

Query: 287 YFLGVGEGINDLEPFVAKDF 306
            F+G GE ++D+  F ++DF
Sbjct: 488 KFIGFGEKVDDIGEFHSEDF 507


>gi|240146503|ref|ZP_04745104.1| signal recognition particle-docking protein FtsY [Roseburia
           intestinalis L1-82]
 gi|257201359|gb|EEU99643.1| signal recognition particle-docking protein FtsY [Roseburia
           intestinalis L1-82]
 gi|291535141|emb|CBL08253.1| signal recognition particle-docking protein FtsY [Roseburia
           intestinalis M50/1]
 gi|291539670|emb|CBL12781.1| signal recognition particle-docking protein FtsY [Roseburia
           intestinalis XB6B4]
          Length = 314

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 130/313 (41%), Positives = 183/313 (58%), Gaps = 13/313 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           W R L  G + T   +  GI  I S    +DD   EE+E++LI  DIGV   + I+E L 
Sbjct: 9   WSR-LVSGLSKTRDNIVSGIDSIFSGFSSIDDDFYEEIEEILIMGDIGVNATEAIIENL- 66

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGVNGVGKTT 126
                K+   +  + D +E    ++  + +  +     + F +   V+LV+GVNGVGKTT
Sbjct: 67  -----KEKVKENKIKDPAECKELLINSIKEQMDVGETAYRFENEKSVVLVIGVNGVGKTT 121

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL+ K+ D G KV+LAA DTFR+AA DQL  WA+R   + +  + G+D A++ Y+A 
Sbjct: 122 SVGKLAGKLKDQGKKVVLAAADTFRAAAGDQLLEWANRAGVEMIGGQEGADPASIVYDAV 181

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+  DVL+ DTAGRLHN   LM  + K+ R+L++  P A    L VLDATTGQNAL
Sbjct: 182 AAAKARNADVLLCDTAGRLHNKKNLMEELKKINRILEKEYPDAYRETLVVLDATTGQNAL 241

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F  VA  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I DL+ F + +F
Sbjct: 242 AQARQFSEVAEITGIILTKMDGTAKGGIAVAIHSELGIPVKYIGVGETIEDLQKFDSNEF 301

Query: 307 SAVITGCLDYGEE 319
              +    D  E+
Sbjct: 302 VNALFDIKDQAEQ 314


>gi|329667084|gb|AEB93032.1| cell division protein [Lactobacillus johnsonii DPC 6026]
          Length = 429

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/274 (37%), Positives = 165/274 (60%), Gaps = 5/274 (1%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIH 93
           R +D+   ++LEDLLI SD+G   A+++ + L     L    + D   Q ++  + ++  
Sbjct: 148 RTVDENFFDDLEDLLIESDVGFETAEELTDSLRDEAKLQNAKSHDALKQVIVEKLVDIYD 207

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K           D S +P+V L VGVNG GKTT IGKL+K++ D+G  VM+ A DTFR+ 
Sbjct: 208 KGGEGEDSKLADDPSAKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAG 267

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++QL  W  R   + +     +D A++ Y+  K+A+ + +D L++DTAGRL N   LM+
Sbjct: 268 AVEQLVEWGRRDGVEVITGPEKADPASVVYDGVKKAKERGIDFLLVDTAGRLQNKVNLMS 327

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ R +K++ P  P+ VL VLD +TGQNAL Q + F      TGL++TK+DG+++GG
Sbjct: 328 ELDKIKRTIKKILPDQPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGG 387

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            ++ I     +PV  +G+GE ++DL  F A+ F+
Sbjct: 388 VVLAIRNEMDLPVKLVGLGEKVDDLANFDAEKFA 421


>gi|218666438|ref|YP_002427127.1| signal recognition particle-docking protein FtsY [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518651|gb|ACK79237.1| signal recognition particle-docking protein FtsY [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 316

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/253 (39%), Positives = 155/253 (61%), Gaps = 2/253 (0%)

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHV 113
           ++D+G A  +++++ +  +    +++    L   + E +  +L P ++P++ +  H   V
Sbjct: 55  QADLGSAATREVMDSVTERVRRNELTDPAALQAALRESLLDILRPRAQPWSPEKGHS-QV 113

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +L+VG+NG GKTT IGKL+ +    G  V+LAAGDTFR+AA++QL+ W  R     V   
Sbjct: 114 LLMVGINGAGKTTTIGKLAARWKAEGFTVVLAAGDTFRAAAVEQLQGWGRRAQVPVVAQG 173

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G+D+A++ ++A    +A+  D+LI DTAGRLH    LM  + K+ RVL + DP AP  +
Sbjct: 174 TGADSASVIFDALTTTRARGSDLLIADTAGRLHTQGHLMEELKKIRRVLGKQDPEAPQQI 233

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             VLDA TGQNAL Q   FH   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGE
Sbjct: 234 WLVLDAGTGQNALNQARQFHDAVGLTGICITKLDGTAKGGVVAAIAKALPIPIRYIGVGE 293

Query: 294 GINDLEPFVAKDF 306
            + DL PF  + F
Sbjct: 294 QVEDLRPFDPESF 306


>gi|313678699|ref|YP_004056439.1| signal recognition particle-docking protein FtsY [Mycoplasma bovis
           PG45]
 gi|312950542|gb|ADR25137.1| signal recognition particle-docking protein FtsY [Mycoplasma bovis
           PG45]
          Length = 352

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/289 (38%), Positives = 176/289 (60%), Gaps = 11/289 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-HKMLM 97
           +++D+   +ELE++LI SDI   +   I+  +  +   ++++  +   D+ ELI  +M +
Sbjct: 67  KKIDEEYFDELEEILIMSDISAKLVYAIITHIKNEVKIRELTNTK---DIGELIADQMFV 123

Query: 98  PLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
             +     D +      R ++++ +GVNG GKTT I K++ K    G KV++AA DTFR+
Sbjct: 124 VYTNKSVVDTTLNVEDDRLNILIFIGVNGCGKTTSIAKVAHKYIKEGKKVLIAAADTFRA 183

Query: 153 AAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            A+DQ+ IW++R  AD V   + G+D A++ Y A ++A+A+  D+L+IDTAGRL N   L
Sbjct: 184 GAVDQIAIWSERVGADIVKPVKEGADPASVVYSALEKAKAENYDLLLIDTAGRLQNKINL 243

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + KM  ++ +    APH  L VLDATTGQN + Q + F  VA  TG+I+TKMDGT++
Sbjct: 244 MNELKKMYSIINKFQEGAPHECLLVLDATTGQNGVSQAKAFSEVANPTGIILTKMDGTSK 303

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL-DYGEE 319
           GG ++ I     I V +LG+GEG++DL+ F   +F   +T  L D  EE
Sbjct: 304 GGIVLSIKDEFNINVKYLGLGEGLDDLQEFDLDNFIYEMTKDLIDKNEE 352


>gi|168333989|ref|ZP_02692213.1| signal recognition particle-docking protein FtsY [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 776

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/304 (41%), Positives = 196/304 (64%), Gaps = 12/304 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S  +KL +G   T   + +G+  ++ S +++D+ + EELE++L+ SD G      I+++
Sbjct: 471 VSKFKKLWQGLTKTRENIWDGVESVLKSFKKIDEELYEELEEVLVMSDFGAETTDAILDQ 530

Query: 70  LL----TKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVG 123
           L     + +  +   ++  L D+   I  +L+   L+ P   D   RP+VILVVGVNG G
Sbjct: 531 LRDVVKSTKITEPAELKEALKDI---ITDILISTDLTNPLVVD--DRPNVILVVGVNGAG 585

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT I KLS K+   G  V+LAA DTFR+AAI+QL+IWADR   D + ++ G+D A++ Y
Sbjct: 586 KTTSIAKLSHKLKQEGKSVLLAAADTFRAAAIEQLEIWADRAGVDVIKNKEGTDPASVVY 645

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K DVLI DTAGRL N   LM  + K+ R++++   +A   V+ VLDATTGQ
Sbjct: 646 DAISAAKARKSDVLICDTAGRLQNKVNLMKELEKIGRIIEKEYSNAHKQVILVLDATTGQ 705

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ QV++F+ V    G+I+TK+DGTA+GG ++ I  +  +PV F+GVGE ++DL+ FV 
Sbjct: 706 NAISQVKLFNEVVKIDGIILTKLDGTAKGGAIVGICQSFNVPVKFIGVGEKMDDLQEFVP 765

Query: 304 KDFS 307
           + F+
Sbjct: 766 EAFA 769


>gi|302872005|ref|YP_003840641.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574864|gb|ADL42655.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 301

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/299 (41%), Positives = 190/299 (63%), Gaps = 8/299 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     E +  ++ S +++DD + EELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFFDRLREGLSKTKKNFTEKVESLLKSFKQVDDELFEELEEILVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKML--MPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           L  +   + +S  + + ++  L  +ML  + L    N ++   P +IL+VGVNGVGKTT 
Sbjct: 61  LKERVKKEKISDSQAIKEI--LKEEMLNIIDLENKLNEEY---PLIILMVGVNGVGKTTS 115

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGK++  +   G KV++ A DTFR+AA +QL+IWA R   D +    G+D AA+ ++  +
Sbjct: 116 IGKIANLLKSNGKKVLIVAADTFRAAAAEQLEIWAKRVGCDIIKHVEGADPAAVVFDGIQ 175

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQNAL 
Sbjct: 176 AMRARKADVLIVDTAGRLHTKKNLIEELKKINRVINQQMPEANKETLLVIDATTGQNALN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q + F+     +G+++TK+DGTA+GG +I I    KIPV F+GVGE I+DL+ F AK+F
Sbjct: 236 QAKEFNQAVNISGIVLTKLDGTAKGGIVISICDELKIPVKFVGVGEKIDDLQYFNAKEF 294


>gi|289548376|ref|YP_003473364.1| signal recognition particle-docking protein FtsY [Thermocrinis
           albus DSM 14484]
 gi|289181993|gb|ADC89237.1| signal recognition particle-docking protein FtsY [Thermocrinis
           albus DSM 14484]
          Length = 456

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 111/272 (40%), Positives = 173/272 (63%), Gaps = 4/272 (1%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           + + R++DD + EELE+ L+++DIGV    K+VE+L  ++ A  +++ +   ++  L+ +
Sbjct: 183 LFAGRKVDDQLLEELEERLVKADIGVKTVAKLVEDL--RKDAIRLNI-KTWEELEPLLKE 239

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            +  L K    D      V L +GVNG GKTT IGKL+  +   G KV+L A DTFRSAA
Sbjct: 240 KVYTLIKDCRGDLKE-GRVYLFLGVNGSGKTTTIGKLAFLLRQRGKKVLLCAADTFRSAA 298

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           I+QL++WA+R+ A  V    G+D AA+ ++A K AQ +  DV+++DTAGRLH    L+  
Sbjct: 299 IEQLEVWAERSGAHIVKHREGADPAAVVFDAMKVAQEQGYDVVLVDTAGRLHTKEPLIRE 358

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+ + ++R  P  P   L VLDAT GQN++ Q ++F      TG+++TK+D +++GG 
Sbjct: 359 LRKIKQTIQRFFPEEPSETLLVLDATVGQNSISQAKVFKEALDITGIVLTKLDSSSKGGA 418

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++ I    KIPV  +G+GEGI+DL+PF  K F
Sbjct: 419 VVAICQDLKIPVKLVGLGEGIDDLQPFDPKVF 450


>gi|332666732|ref|YP_004449520.1| signal recognition particle-docking protein FtsY [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335546|gb|AEE52647.1| signal recognition particle-docking protein FtsY [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 345

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/297 (42%), Positives = 178/297 (59%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T       ++ +++ R  +D+ V +ELE LLI +D+G A + +I+E +   R 
Sbjct: 43  LDKGLEKTKSSFFNNLSKMVAGRSTVDEEVLDELEALLISADVGRATSTEIIERI-EARV 101

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129
           AKD  + +  + + + + I ++L   +      +      +P V+LVVGVNGVGKTT IG
Sbjct: 102 AKDKYLGISELNFILRDEIVQLLAENNTQDLAGYELPTGIKPFVLLVVGVNGVGKTTTIG 161

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV+L AGDTFR+AA+DQLKIW++R   DF    + +D AA+AYE    A
Sbjct: 162 KLAHQFKKQGKKVVLGAGDTFRAAAVDQLKIWSERVGCDFYSKGMNTDPAAVAYETVNYA 221

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D+ IIDTAGRLH  + LM  +GK+ R + +    APH VL VLDATTGQNA+ Q 
Sbjct: 222 IQNDCDIAIIDTAGRLHTKTGLMQELGKIKRSISKKIETAPHEVLLVLDATTGQNAIEQA 281

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F        L +TK+DGTA+GG  I I    KIP+ ++GVGE I+ L+PF  + F
Sbjct: 282 KHFTEATDVNALALTKLDGTAKGGVAIGISNQFKIPIKYIGVGEAIDQLQPFDKQTF 338


>gi|226322323|ref|ZP_03797841.1| hypothetical protein COPCOM_00084 [Coprococcus comes ATCC 27758]
 gi|225209245|gb|EEG91599.1| hypothetical protein COPCOM_00084 [Coprococcus comes ATCC 27758]
          Length = 291

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 127/271 (46%), Positives = 179/271 (66%), Gaps = 9/271 (3%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK---RYAKD-VSVQRVLYDVSELIHKM 95
           ++D+   EELE++LI  D+GV     I+++L  K   ++ K+ +  +++L D      K 
Sbjct: 10  KIDEDFYEELEEVLIMGDLGVKATYAILDDLRKKVKEQHIKEPIECRQLLIDSI----KE 65

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
            M + +   ++F ++  V+LV+GVNGVGKTT IGKL+ KM   G KV+LAA DTFR+AA 
Sbjct: 66  QMDVGET-AYEFENQTSVVLVIGVNGVGKTTTIGKLAGKMRGQGKKVVLAAADTFRAAAG 124

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           DQLK WA R+ AD +  + G+D AA+ Y+A   A+A+K D+L++DTAGRLHN   LM  +
Sbjct: 125 DQLKEWAHRSDADLIGGQEGADPAAIVYDAVAAAKARKADILLVDTAGRLHNKKNLMEEL 184

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K+ RVL+R  P A    L VLDATTGQNAL Q + F  VA  TG+I+TKMDGTA+GG  
Sbjct: 185 KKINRVLEREYPEAYRETLVVLDATTGQNALSQAKEFSDVADITGIILTKMDGTAKGGIA 244

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + I     IPV ++GVGE I+DL+ F + +F
Sbjct: 245 VAIQAELGIPVKYIGVGETIDDLQKFDSDEF 275


>gi|289168048|ref|YP_003446317.1| cell division protein FtsY [Streptococcus mitis B6]
 gi|288907615|emb|CBJ22452.1| cell division protein FtsY [Streptococcus mitis B6]
          Length = 429

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 110/257 (42%), Positives = 155/257 (60%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++     VL  V  +I K++    K  N+D    F  
Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKTDVLRRV--IIEKLVELYEKGGNYDERIHFQD 223

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 224 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 404 GFGEKIDDIGEFNSENF 420


>gi|198284460|ref|YP_002220781.1| signal recognition particle-docking protein FtsY [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198248981|gb|ACH84574.1| signal recognition particle-docking protein FtsY [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 343

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/253 (39%), Positives = 155/253 (61%), Gaps = 2/253 (0%)

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHV 113
           ++D+G A  +++++ +  +    +++    L   + E +  +L P ++P++ +  H   V
Sbjct: 82  QADLGSAATREVMDSVTERVRRNELTDPAALQAALRESLLDILRPRAQPWSPEKGHS-QV 140

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +L+VG+NG GKTT IGKL+ +    G  V+LAAGDTFR+AA++QL+ W  R     V   
Sbjct: 141 LLMVGINGAGKTTTIGKLAARWKAEGFTVVLAAGDTFRAAAVEQLQGWGRRAQVPVVAQG 200

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G+D+A++ ++A    +A+  D+LI DTAGRLH    LM  + K+ RVL + DP AP  +
Sbjct: 201 TGADSASVIFDALTTTRARGSDLLIADTAGRLHTQGHLMEELKKIRRVLGKQDPEAPQQI 260

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             VLDA TGQNAL Q   FH   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGE
Sbjct: 261 WLVLDAGTGQNALNQARQFHDAVGLTGICITKLDGTAKGGVVAAIAKALPIPIRYIGVGE 320

Query: 294 GINDLEPFVAKDF 306
            + DL PF  + F
Sbjct: 321 QVEDLRPFDPESF 333


>gi|148377470|ref|YP_001256346.1| cell division protein FtsY [Mycoplasma agalactiae PG2]
 gi|148291516|emb|CAL58902.1| Cell division protein FtsY [Mycoplasma agalactiae PG2]
          Length = 354

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 112/289 (38%), Positives = 176/289 (60%), Gaps = 11/289 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-HKMLM 97
           +++D+   +ELE++LI SDI   +   I+  +  +   ++++  +   D+ ELI  +M +
Sbjct: 69  KKIDEEYFDELEEILIMSDISAKLVYAIITYIKNEVKIRELTSTK---DIGELIADQMFV 125

Query: 98  PLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
             +     D +      R ++++ +GVNG GKTT I K++ K    G KV++AA DTFR+
Sbjct: 126 VYTNKSVVDTTLNVEDDRLNILIFIGVNGSGKTTSIAKVAHKYIKEGKKVLIAAADTFRA 185

Query: 153 AAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            A+DQ+ IW++R  AD V   + G+D A++ Y A ++A+A+  D+L+IDTAGRL N   L
Sbjct: 186 GAVDQIAIWSERVGADIVKPIKEGADPASVVYSALEKAKAENYDLLLIDTAGRLQNKINL 245

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + KM  ++ +    APH  L VLDATTGQN + Q + F  VA  TG+I+TKMDGT++
Sbjct: 246 MNELKKMYSIINKFQEGAPHECLLVLDATTGQNGVSQAKAFSEVANPTGIILTKMDGTSK 305

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL-DYGEE 319
           GG ++ I     I V +LG+GEG++DL+ F   +F   +T  L D  EE
Sbjct: 306 GGIVLSIKDEFNINVKYLGLGEGLDDLQEFDLDNFIYEMTKDLIDKNEE 354


>gi|210622531|ref|ZP_03293224.1| hypothetical protein CLOHIR_01172 [Clostridium hiranonis DSM 13275]
 gi|210154166|gb|EEA85172.1| hypothetical protein CLOHIR_01172 [Clostridium hiranonis DSM 13275]
          Length = 450

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/292 (42%), Positives = 189/292 (64%), Gaps = 8/292 (2%)

Query: 27  KLKEGITDII-----SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS- 80
           K K+GITD I     S   +D+ + E+LE++LI +D+GV    +I+++L  +  +K ++ 
Sbjct: 160 KAKQGITDRIDEVLKSYTSVDEELFEDLEEVLITADVGVNTTMQIIDDLNDRVRSKKITD 219

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
              V  ++ E++ ++L   +     D    P +I++VGVNGVGKTT IGKL+ +    G 
Sbjct: 220 PMAVREELKEIVEEILSKGNSKL--DVEPSPAIIIMVGVNGVGKTTTIGKLALRYKSEGK 277

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           KVMLAA DTFR+AA +QL IWA RT+ + V    G+D  A+ ++A K A+A+K DVLI D
Sbjct: 278 KVMLAAADTFRAAATEQLDIWAKRTNTEIVKHHEGADPGAVVFDAIKAAKARKTDVLICD 337

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRLHN + LM  +GK+ +++ +  P A   VL V+DATTGQNA+ Q + F  VA  TG
Sbjct: 338 TAGRLHNKANLMNELGKIFKIIDKEFPEAKKEVLLVVDATTGQNAVVQAKSFKEVADITG 397

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +++TK+DGTA+GG ++ +     +PV  +GVGE   DL+ F A++F+A + G
Sbjct: 398 IVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGEKAEDLQDFDAREFTAALFG 449


>gi|42519391|ref|NP_965321.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii
           NCC 533]
 gi|41583679|gb|AAS09287.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii
           NCC 533]
          Length = 443

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 104/274 (37%), Positives = 164/274 (59%), Gaps = 5/274 (1%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIH 93
           R +D+   ++LEDLLI SD+G   A+++ + L     L    + D   Q ++  + ++  
Sbjct: 162 RTVDENFFDDLEDLLIESDVGFETAEELTDSLRDEAKLQNAKSHDALKQVIVEKLVDIYD 221

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K           D S +P+V L VGVNG GKTT IGKL+K++ D+G  VM+ A DTFR+ 
Sbjct: 222 KGGEGEDSKLADDPSAKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAG 281

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++QL  W  R   + +     +D A++ Y   K+A+ + +D L++DTAGRL N   LM+
Sbjct: 282 AVEQLVEWGRRDGVEVITGPEKADPASVVYNGVKKAKERGIDFLLVDTAGRLQNKVNLMS 341

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ R +K++ P  P+ VL VLD +TGQNAL Q + F      TGL++TK+DG+++GG
Sbjct: 342 ELDKIKRTIKKILPDQPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGG 401

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            ++ I     +PV  +G+GE ++DL  F A+ F+
Sbjct: 402 VVLAIRNEMDLPVKLVGLGEKVDDLANFDAEKFA 435


>gi|291277533|ref|YP_003517305.1| putative signal recognition particle receptor protein [Helicobacter
           mustelae 12198]
 gi|290964727|emb|CBG40582.1| putative signal recognition particle receptor protein [Helicobacter
           mustelae 12198]
          Length = 292

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/268 (39%), Positives = 162/268 (60%), Gaps = 20/268 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTK--RYAKDVSVQRVL-----YDVSELIHKMLMP 98
           +E LE++LI +D+   V +++++ L     R   +V + R       YD   L       
Sbjct: 26  KELLEEVLIEADVDYEVIEQLLQHLPQNITRNQLEVGLDRFFRGESYYDKVSL------- 78

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
                  D   +P V L++GVNG GKTT I KL+K+  D+G KV+L AGDTFR+AAIDQL
Sbjct: 79  ------KDIPTKPLVELIIGVNGAGKTTTIAKLAKRYKDSGKKVLLGAGDTFRAAAIDQL 132

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K+W+++ S D + ++ GSD +ALAY+      A+K+D +IIDTAGRLHN + L   + K+
Sbjct: 133 KLWSEKISVDIISTQYGSDPSALAYDTINAGSARKMDHIIIDTAGRLHNQTNLKNELLKI 192

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RV  +   + P+  + +LD T G +++ Q ++FH +    G+I+TK+DGT++GG ++ I
Sbjct: 193 TRVCSKALNNEPYRKILILDGTQGSSSINQAKIFHEMLKVDGVILTKLDGTSKGGAILSI 252

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +   K+P+  +GVGE   DL  F  KDF
Sbjct: 253 IHALKLPIIAIGVGERAEDLLDFDQKDF 280


>gi|319939362|ref|ZP_08013722.1| signal recognition particle-docking protein FtsY [Streptococcus
           anginosus 1_2_62CV]
 gi|319811348|gb|EFW07643.1| signal recognition particle-docking protein FtsY [Streptococcus
           anginosus 1_2_62CV]
          Length = 497

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 112/257 (43%), Positives = 155/257 (60%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHRP 111
           I SD+GV VA  + E L  +   ++      L  V  +I K++    K   FN   + + 
Sbjct: 234 ITSDVGVQVASNLTEALRQEARLENAKKPEALRRV--IIEKLVDIYEKDGQFNEKINLQD 291

Query: 112 --HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ K   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 292 GLTVMLFVGVNGVGKTTSIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDVPV 351

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     SD A++ Y+  ++A+A+ VD+L+IDTAGRL N   LMA + K+ R++KR+DP A
Sbjct: 352 VTGPEKSDPASVVYDGMERAKAENVDILMIDTAGRLQNKDNLMAELEKIGRIIKRVDPAA 411

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 412 PHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLI 471

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 472 GFGEKIDDIGVFNSENF 488


>gi|320334177|ref|YP_004170888.1| signal recognition particle-docking protein FtsY [Deinococcus
           maricopensis DSM 21211]
 gi|319755466|gb|ADV67223.1| signal recognition particle-docking protein FtsY [Deinococcus
           maricopensis DSM 21211]
          Length = 319

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 124/314 (39%), Positives = 183/314 (58%), Gaps = 26/314 (8%)

Query: 11  LSWIRKLTKGFASTSLKLKEGI----TDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +SW  +L  G + T  +L   +    TD+  + + RLD    E+LE  LI +D+G A  +
Sbjct: 1   MSWFDRLRDGLSKTRQQLNTSVGFLGTDLKDVFTNRLD--TLEDLEYALIAADVGRAATE 58

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK----------PFNWDFSHRPH-- 112
           +I+E++   + +   ++Q  L D   L    L P +K          P     + +P   
Sbjct: 59  EILEDI---KNSGKTNLQEALMDAMTL---QLEPDAKRAQFRKLGFTPDARRSTVQPEGR 112

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VI+++GVNGVGKTT I KL +     G  VM AAGDTFR+AA  QL +W +R     V  
Sbjct: 113 VIMMIGVNGVGKTTTIAKLGQYYGSRGQSVMFAAGDTFRAAAGAQLGVWGERLGIPVVQG 172

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G D AA+A++A +  +A+  D+L +DTAGRLHN   LM  + K+ RV+ + DP  P  
Sbjct: 173 PDGGDPAAVAFDAAQARRARGTDLLFVDTAGRLHNKHNLMEELKKVRRVIDKADPGEPAE 232

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V  VLDA TGQN L+Q + FH   G TG+++TK+DGTA+GG ++PIV    +P+ F+GVG
Sbjct: 233 VWLVLDAVTGQNGLQQAKKFHESIGLTGVVVTKLDGTAKGGIVVPIVRELGVPIKFIGVG 292

Query: 293 EGINDLEPFVAKDF 306
           E  +DL+PF +++F
Sbjct: 293 ESADDLQPFDSREF 306


>gi|225567886|ref|ZP_03776911.1| hypothetical protein CLOHYLEM_03959 [Clostridium hylemonae DSM
           15053]
 gi|225163287|gb|EEG75906.1| hypothetical protein CLOHYLEM_03959 [Clostridium hylemonae DSM
           15053]
          Length = 325

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 135/304 (44%), Positives = 187/304 (61%), Gaps = 8/304 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQK 65
           + E   + R+L  G   T   +  G+ +I S   R+D+   EELE++LI  D+GV     
Sbjct: 14  SGEKQGFFRRLVSGLTKTRDNIISGMDNIFSGFSRIDEEFYEELEEVLIMGDLGVQATDN 73

Query: 66  IVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           I+E+L  K   R+ K+ S  R L  +  +  +M +  +    ++F  R  V++V+GVNGV
Sbjct: 74  ILEDLKEKVRARHIKEPSECRQLL-IDSIKEQMDIGETA---YEFEDRTSVVMVIGVNGV 129

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ K+     KV+LAA DTFR+AA +QLK WADR  A+ +  + GSD A++ 
Sbjct: 130 GKTTTIGKLAGKLRSRHKKVVLAAADTFRAAAGEQLKEWADRAQAELIGGQEGSDPASVV 189

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A+A+  DVL+ DTAGRLHN   LM  + KM R++ R  P A    L VLDATTG
Sbjct: 190 YDAVAAAKARHADVLLCDTAGRLHNKKNLMEELKKMNRIIDREFPDAYRETLVVLDATTG 249

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q + F+ VA  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I DL+ F 
Sbjct: 250 QNALMQAKEFNEVADITGIILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIEDLQKFD 309

Query: 303 AKDF 306
           A +F
Sbjct: 310 ADEF 313


>gi|293365544|ref|ZP_06612253.1| cell division protein FtsY [Streptococcus oralis ATCC 35037]
 gi|307703501|ref|ZP_07640443.1| signal recognition particle-docking protein FtsY [Streptococcus
           oralis ATCC 35037]
 gi|291315912|gb|EFE56356.1| cell division protein FtsY [Streptococcus oralis ATCC 35037]
 gi|307622908|gb|EFO01903.1| signal recognition particle-docking protein FtsY [Streptococcus
           oralis ATCC 35037]
          Length = 433

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N+D    F  
Sbjct: 170 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQD 227

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 228 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 287

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 288 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 347

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 348 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 407

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 408 GFGEKIDDIGEFNSENF 424


>gi|329117593|ref|ZP_08246310.1| signal recognition particle-docking protein FtsY [Streptococcus
           parauberis NCFD 2020]
 gi|326907998|gb|EGE54912.1| signal recognition particle-docking protein FtsY [Streptococcus
           parauberis NCFD 2020]
          Length = 537

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 116/272 (42%), Positives = 172/272 (63%), Gaps = 6/272 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           RR+D+   EELE++LI SD+GV+VA ++ +EL  +   ++      L  V  ++ K++  
Sbjct: 259 RRVDEEFFEELEEMLILSDVGVSVATRLTDELRQEVKLENAKKPEDLRRV--IVQKLVDI 316

Query: 99  LSKP--FNWDFSHRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
             K   +N   +++    V+L+VGVNGVGKTT IGKL+ K  + G KVML A DTFR+ A
Sbjct: 317 YEKDGVYNEAVNYQKGLTVMLLVGVNGVGKTTSIGKLAYKYKNEGKKVMLVAADTFRAGA 376

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           + QL  W  R     V     +D A++ ++  ++A ++ VD+L+IDTAGRL N   LMA 
Sbjct: 377 VAQLAEWGRRVDVPVVMGPEKADPASVVFDGVERAVSENVDILLIDTAGRLQNKENLMAE 436

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + KM R++KR+ P APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DG+A+GG 
Sbjct: 437 LEKMGRIIKRVIPDAPHETLLALDASTGQNALSQAKEFSKIMSLTGLILTKIDGSAKGGV 496

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++ I     IPV F+G GE I+D+  F +++F
Sbjct: 497 VLAIRQELDIPVKFIGFGEKIDDIGQFDSEEF 528


>gi|306825132|ref|ZP_07458474.1| cell division protein FtsY [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432568|gb|EFM35542.1| cell division protein FtsY [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 433

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N+D    F  
Sbjct: 170 IMSDVGVQVASNLTEELRYEAKLENAKKPEALRRV--IIEKLVELYEKDGNYDEQIHFQD 227

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 228 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 287

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 288 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 347

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 348 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 407

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 408 GFGEKIDDIGEFNSENF 424


>gi|206890360|ref|YP_002249629.1| signal recognition particle-docking protein FtsY
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742298|gb|ACI21355.1| signal recognition particle-docking protein FtsY
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 301

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 113/251 (45%), Positives = 168/251 (66%), Gaps = 4/251 (1%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHVIL 115
           D+GV   ++I    + +R  K+  ++    DV  ++ + L+ L K   + +  + P +IL
Sbjct: 48  DVGVKATEEITG--ILRRKIKEGGIKDA-SDVKIVLKEELINLLKNNTSLNLKNTPSIIL 104

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT IGKL  K  + G  V+ AA DTFR+AAI+QL+IWA +  AD +  + G
Sbjct: 105 VVGVNGVGKTTTIGKLGYKFVNEGKSVVFAAADTFRAAAIEQLEIWAKKVGADIIKHKSG 164

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D AA+A++A + A+A+  D++IIDTAGRLH  S LM  + K+ RVLK+  P APH  L 
Sbjct: 165 ADPAAIAFDALEHAKAQNKDIVIIDTAGRLHTKSPLMEELRKINRVLKKSIPEAPHETLL 224

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           ++DATTGQNA+RQ  +F+   G TG+++TK+DGTA+GG +  I     IP+  +G+GEGI
Sbjct: 225 IVDATTGQNAIRQASLFNEAIGLTGVVVTKLDGTAKGGVIFAIKKEIGIPIKLIGIGEGI 284

Query: 296 NDLEPFVAKDF 306
           +DL+ F+ ++F
Sbjct: 285 DDLKEFIPQEF 295


>gi|51246788|ref|YP_066672.1| cell division protein FtsY [Desulfotalea psychrophila LSv54]
 gi|50877825|emb|CAG37665.1| probable cell division protein FtsY [Desulfotalea psychrophila
           LSv54]
          Length = 470

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 162/264 (61%), Gaps = 20/264 (7%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-----VSELIHK------MLMPLSKP 102
           I +D+GV+   +I+E    K   K++S    L +     ++  I +      ++MP S P
Sbjct: 206 IMADLGVSTTDEILEFARRKAKRKELSDPAALKEAIKTKIASFIEEAQEDAELVMPESGP 265

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           F         +I+V+GVNGVGKTT IGK++KK  ++G  VML A DTFR+AA+ QLKIW 
Sbjct: 266 F---------IIMVIGVNGVGKTTTIGKIAKKFVNSGNSVMLVAADTFRAAAVSQLKIWG 316

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           +R        + G+D +++AY+A  +A A++ DV++IDTAGRLH  + LM  + K+ RV+
Sbjct: 317 ERNEVPVFSRQEGADPSSVAYDAIAKAVAEEYDVVLIDTAGRLHTQTNLMEELKKIKRVI 376

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            +    APH ++ V+DATTGQN + Q ++F+   G TG+ +TK+DGTA+GG +  I    
Sbjct: 377 GKNCAGAPHEIMLVIDATTGQNGISQAKLFNDAVGITGITLTKLDGTAKGGIVANISREL 436

Query: 283 KIPVYFLGVGEGINDLEPFVAKDF 306
             P+ F+G+GE I+DL  F   +F
Sbjct: 437 DTPIRFIGIGEQIDDLRDFDHNEF 460


>gi|270292811|ref|ZP_06199022.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           M143]
 gi|270278790|gb|EFA24636.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           M143]
          Length = 436

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N+D    F  
Sbjct: 173 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQD 230

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 231 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 290

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 291 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 350

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 351 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 410

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 411 GFGEKIDDIGEFNSENF 427


>gi|306829602|ref|ZP_07462792.1| cell division protein FtsY [Streptococcus mitis ATCC 6249]
 gi|304428688|gb|EFM31778.1| cell division protein FtsY [Streptococcus mitis ATCC 6249]
          Length = 435

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N+D    F  
Sbjct: 172 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQD 229

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 230 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 289

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 290 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 349

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 350 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 409

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 410 GFGEKIDDIGEFNSENF 426


>gi|322391784|ref|ZP_08065249.1| cell division protein FtsY [Streptococcus peroris ATCC 700780]
 gi|321145264|gb|EFX40660.1| cell division protein FtsY [Streptococcus peroris ATCC 700780]
          Length = 498

 Score =  195 bits (496), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N++    F  
Sbjct: 235 IMSDVGVQVASNLTEELRYEAKLENAKKPEALRRV--IIEKLVDLYEKDGNYNESINFQD 292

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 293 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 352

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ VD+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 353 VTGPEKADPASVVFDGMERAVAEGVDILMIDTAGRLQNKENLMAELEKIGRIIKRVVPEA 412

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 413 PHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIREELNIPVKLI 472

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 473 GFGEKIDDIGEFNSENF 489


>gi|225571978|ref|ZP_03780842.1| hypothetical protein RUMHYD_00272 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040511|gb|EEG50757.1| hypothetical protein RUMHYD_00272 [Blautia hydrogenotrophica DSM
           10507]
          Length = 313

 Score =  195 bits (496), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 125/306 (40%), Positives = 183/306 (59%), Gaps = 10/306 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  E   + ++L  G + T   +  GI  I S    +D+   EE+E++LI  D+G+    
Sbjct: 1   MGEEKKGFFKRLVSGLSKTRANIVSGIDSIFSGFSSIDEDFYEEIEEILIMGDLGINATT 60

Query: 65  KIVEELL----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            I+E L      KR       +++L D   +  +M +  ++   ++F +R  VILV+GVN
Sbjct: 61  SIIENLKKQVEEKRIKDPAECKKLLID--SIKQEMTVGNTE---YEFENRKSVILVIGVN 115

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT +GKL+ K+ D G KV+LAA DTFR+AA +QL  WA+R   + +  + G+D A+
Sbjct: 116 GVGKTTSVGKLAGKLKDQGKKVILAAADTFRAAAGEQLIQWANRAGVELIGGQPGADPAS 175

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A   A+A+  D+L+ DTAGRLHN   LM  + K+ R+L++  P A    L VLD T
Sbjct: 176 VVFDAVAAAKARNADILLCDTAGRLHNKKNLMEELRKIYRILEKEYPEAYLETLVVLDGT 235

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q   F  VA  TG+I+TK+DGTA+GG  + I     IPV ++GVGE I DLE 
Sbjct: 236 TGQNALAQARQFAEVAKVTGIILTKLDGTAKGGIAVAIHSELDIPVKYIGVGESIEDLEK 295

Query: 301 FVAKDF 306
           F A+ F
Sbjct: 296 FNAESF 301


>gi|260892850|ref|YP_003238947.1| signal recognition particle-docking protein FtsY [Ammonifex
           degensii KC4]
 gi|260864991|gb|ACX52097.1| signal recognition particle-docking protein FtsY [Ammonifex
           degensii KC4]
          Length = 301

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 132/283 (46%), Positives = 186/283 (65%), Gaps = 9/283 (3%)

Query: 32  ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYD 87
           I +++  R++D+ + EELED LI +D+GV   ++++E+L  +  A+ V     ++R+L +
Sbjct: 22  IDNVLRRRKIDEELYEELEDTLILADVGVPATEELLEKLKARVKAERVEEVEDLRRLLQE 81

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             E++H +  P+           P VIL+VGVNG GKTT  GKL+      G KV+LAA 
Sbjct: 82  --EILHLLGEPVPLLLP---PSPPAVILLVGVNGTGKTTTAGKLAYFFRQQGKKVLLAAA 136

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAIDQL+IWA+++ + FV  + GSD AA+ ++A + A+A+ VDV+I DTAGRLH 
Sbjct: 137 DTFRAAAIDQLEIWAEKSGSLFVRQKEGSDPAAVVFDALQAAKARGVDVVIADTAGRLHT 196

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            S LMA +GK++RV  R    APH VL VLDATTGQNAL Q  +F  V G TG+++TK+D
Sbjct: 197 KSHLMAELGKIVRVAAREVEGAPHEVLLVLDATTGQNALSQARLFKEVTGVTGIVLTKLD 256

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           GTA+GG +I I     +PV F+G GE I DL PF   +F   I
Sbjct: 257 GTAKGGVVIAIRKELGLPVKFIGTGEKIEDLAPFDPAEFVKAI 299


>gi|238916988|ref|YP_002930505.1| signal recognition particle receptor [Eubacterium eligens ATCC
           27750]
 gi|238872348|gb|ACR72058.1| signal recognition particle receptor [Eubacterium eligens ATCC
           27750]
          Length = 311

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 121/301 (40%), Positives = 180/301 (59%), Gaps = 10/301 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL +G   T   +  GI  + S    +DD   +ELE+ LI  DIGV   ++I+++
Sbjct: 1   MGFFSKLKEGLTKTRDNIVSGIDSVFSGFSSIDDDFYDELEETLIMGDIGVVATEEILDD 60

Query: 70  LLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           L  K    +       +++L D   +  KM +  +    ++F +R  +++++GVNGVGKT
Sbjct: 61  LKNKVKENKIKNPADCKQLLID--SIKEKMNLGENA---YEFENRKSIVMLIGVNGVGKT 115

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL+  +     KV++AA DTFR+AAI+QL  W++RT AD +    GSD AA+ Y++
Sbjct: 116 TSVGKLAGLLKAQNKKVIMAAADTFRAAAIEQLTEWSNRTGADIIAQSEGSDPAAVIYDS 175

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
               +A+K DVL+ DTAGRL N   LM  + K+ RV++R    A    L VLDATTGQNA
Sbjct: 176 IAACKARKADVLLCDTAGRLQNKKNLMEELRKIDRVIEREYSDAYRENLIVLDATTGQNA 235

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q+  F+ V   TG+I+TKMDGTA+GG  + I     IPV ++GVGE + DL+ F +  
Sbjct: 236 LSQLREFNDVTNITGIILTKMDGTAKGGIAVAIQAEFGIPVKYIGVGEKVEDLQKFDSDT 295

Query: 306 F 306
           F
Sbjct: 296 F 296


>gi|225856910|ref|YP_002738421.1| cell division protein FtsY [Streptococcus pneumoniae P1031]
 gi|225724623|gb|ACO20475.1| cell division protein FtsY [Streptococcus pneumoniae P1031]
          Length = 429

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 155/257 (60%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++     VL  V  +I K++    K  ++D    F  
Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDVLRRV--IIEKLVELYEKDGSYDESIHFQD 223

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 404 GFGEKIDDIGEFNSENF 420


>gi|116492611|ref|YP_804346.1| signal recognition particle-docking protein FtsY [Pediococcus
           pentosaceus ATCC 25745]
 gi|116102761|gb|ABJ67904.1| signal recognition particle-docking protein FtsY [Pediococcus
           pentosaceus ATCC 25745]
          Length = 406

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 115/283 (40%), Positives = 171/283 (60%), Gaps = 11/283 (3%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL- 99
           +D+   ++LE+ LI +D+G   A +I EE+  +   + VS       +S+LI + L+ L 
Sbjct: 126 VDEDFYDDLEETLIEADVGFDTALEISEEVRDEIEFEHVSDPD---QISQLIVRRLVALY 182

Query: 100 -----SKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                ++  +  FS   P V L VGVNGVGKTT IGK++ +    G KV+LAA DTFR+ 
Sbjct: 183 TRNGSAEDNHLVFSKEGPTVFLFVGVNGVGKTTSIGKMAARFKGRGRKVLLAACDTFRAG 242

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           AI QL+ W  R   D V  +  SD A++A+EA K+A+ +  D+L++DTAGRL N   LM 
Sbjct: 243 AIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKAKEENYDLLLVDTAGRLQNKVNLMN 302

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ RV+ R  P AP   L VLD+TTGQNAL Q + F      TG+I+TK+DGTA+GG
Sbjct: 303 ELDKIKRVISREIPDAPQETLLVLDSTTGQNALTQAKAFLETTNVTGIILTKLDGTAKGG 362

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-SAVITGCLD 315
            ++ I     + V ++G+GE ++DL PF  + + S +  G ++
Sbjct: 363 IVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSGLFKGLME 405


>gi|255658107|ref|ZP_05403516.1| signal recognition particle-docking protein FtsY [Mitsuokella
           multacida DSM 20544]
 gi|260849412|gb|EEX69419.1| signal recognition particle-docking protein FtsY [Mitsuokella
           multacida DSM 20544]
          Length = 304

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 141/202 (69%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+LV+GVNG GKTT IGKL+      G  V+LAA DTFR+AAIDQL++W  RT    +
Sbjct: 102 PTVLLVIGVNGAGKTTTIGKLAAYYKGQGKSVLLAAADTFRAAAIDQLEVWGQRTGVPVI 161

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E GSD AA+A++A K A A+KVD+LIIDTAGRL   S LM  + K+ RV+ R  P AP
Sbjct: 162 KHEEGSDPAAVAFDAVKAAVARKVDMLIIDTAGRLQTKSNLMQELEKINRVIGREIPGAP 221

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H  L VLDATTGQNA+ Q E+F   A  TG+++TK+DGTA+GG +I I     +PV ++G
Sbjct: 222 HETLLVLDATTGQNAISQAELFTKAAPITGVVLTKLDGTAKGGVVIGIKSQLSMPVKWIG 281

Query: 291 VGEGINDLEPFVAKDFSAVITG 312
           VGEG+ DL PF A+DF+  + G
Sbjct: 282 VGEGVEDLRPFNAEDFAKALFG 303


>gi|169830830|ref|YP_001716812.1| signal recognition particle-docking protein FtsY [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169637674|gb|ACA59180.1| signal recognition particle-docking protein FtsY [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 304

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 120/270 (44%), Positives = 170/270 (62%), Gaps = 7/270 (2%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKML 96
           +D+ + EELE++LI++D+GV  + ++V    E +  ++      ++ +L D    + ++ 
Sbjct: 32  VDESLYEELEEILIQADVGVETSLELVARVRERMKAQKLDDPTKLKPILKDE---LRRIF 88

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
               +  N      P VILVVGVNG GKTT IGKL+  +   G KV+LAA DTFR+AAID
Sbjct: 89  AGGDETANLRLDGDPTVILVVGVNGTGKTTSIGKLAHLLRRDGKKVLLAAADTFRAAAID 148

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL+IWA R   + +    G+D AA+ Y+A + A+A++ DVLIIDTAGRLH    LM  + 
Sbjct: 149 QLEIWAHRAGVELIRHGEGADPAAVVYDAIQAARAREYDVLIIDTAGRLHTRVNLMEELK 208

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+ RV+ R  P AP  VL VLDATTG NA+ Q ++F    G TG+++TK+DGTA+GG + 
Sbjct: 209 KVFRVVSRELPGAPQEVLLVLDATTGHNAVNQAKIFGEAVGVTGIVLTKLDGTAKGGIVA 268

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            I  + KIPV  +G GE I DL  F A +F
Sbjct: 269 AIRNSQKIPVKLVGTGERIEDLSYFHAGEF 298


>gi|331266282|ref|YP_004325912.1| SRPR, signal recognition particle-docking protein [Streptococcus
           oralis Uo5]
 gi|326682954|emb|CBZ00571.1| SRPR, signal recognition particle-docking protein [Streptococcus
           oralis Uo5]
          Length = 433

 Score =  195 bits (495), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N+D    F  
Sbjct: 170 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQD 227

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 228 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 287

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 288 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 347

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 348 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 407

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 408 GFGEKIDDIGEFNSENF 424


>gi|229822806|ref|ZP_04448876.1| hypothetical protein GCWU000282_00095 [Catonella morbi ATCC 51271]
 gi|229787619|gb|EEP23733.1| hypothetical protein GCWU000282_00095 [Catonella morbi ATCC 51271]
          Length = 340

 Score =  195 bits (495), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 178/302 (58%), Gaps = 14/302 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG----VAVAQKIVE 68
           I    +G A T     + +T++ +S R +D+   E+LE+  I +D+G    +A+   I +
Sbjct: 31  IDSYDQGTAKTRRNFTDIMTNLFTSFREVDEEFYEDLEEAFIGADVGFAMTIAITDAIRD 90

Query: 69  ELLTKRYAKDVSVQRVLYD----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           E+      K   V+RVL +    V E   + L+ L +  N D    P VIL VGVNGVGK
Sbjct: 91  EIERTGVHKPEDVKRVLLEKMVQVYERGGQNLVSLKE--NPD---GPTVILFVGVNGVGK 145

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT +GK+  ++   G KV++AA DTFR+ A++QL +W +R     V  +   D AA+ Y+
Sbjct: 146 TTSVGKIGYQLKQEGHKVLMAAADTFRAGAVEQLNVWGERLDIPVVTGKAQGDPAAVVYD 205

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K+A A+  D L++DTAGRL   + LM  + K+ R+++R +P+    VL  LDATTGQN
Sbjct: 206 AVKKANAEGYDYLLVDTAGRLQTKANLMEELAKIKRIIERENPNGVQEVLLALDATTGQN 265

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F+     TGL++TK+DGTA+GG ++ I     IPV ++G+GE   DL+ F A+
Sbjct: 266 ALIQAKQFNEATEITGLVLTKLDGTAKGGVVLSIRYELDIPVKYIGLGEKATDLKKFDAE 325

Query: 305 DF 306
            +
Sbjct: 326 AY 327


>gi|325677818|ref|ZP_08157460.1| signal recognition particle-docking protein FtsY [Ruminococcus
           albus 8]
 gi|324110372|gb|EGC04546.1| signal recognition particle-docking protein FtsY [Ruminococcus
           albus 8]
          Length = 301

 Score =  195 bits (495), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 112/251 (44%), Positives = 164/251 (65%), Gaps = 2/251 (0%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           SDIGV  + KI +++      K ++    + DV + +   ++   +P   D S  P VIL
Sbjct: 47  SDIGVNTSVKICDKVRDYVKQKGITDPTAIKDVLKDVIAEMLGEEQPL--DLSTTPSVIL 104

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           V+GVNGVGKTT IGKL+ ++ + G +V++AA DTFR+AAIDQL++W DR   + +  + G
Sbjct: 105 VIGVNGVGKTTTIGKLANQLKNEGKRVIVAAADTFRAAAIDQLEVWTDRAGVELIKHKEG 164

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ ++A   A+A++ DV+I DTAGRLHN   LM  + K+ R++ +        VL 
Sbjct: 165 SDPAAVVFDALTAAKARQADVVICDTAGRLHNKKNLMNELEKISRIVHQQAEGCALEVLL 224

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            LDATTGQNA+ Q + F+  A  TG+I+TK+DGTA+GG +I I    KIPV  + VGE I
Sbjct: 225 ALDATTGQNAVNQAQQFNEAANITGIILTKLDGTAKGGIVITICDDLKIPVKLVTVGEKI 284

Query: 296 NDLEPFVAKDF 306
           +D++PF+A+DF
Sbjct: 285 DDIQPFIARDF 295


>gi|312898600|ref|ZP_07757990.1| signal recognition particle-docking protein FtsY [Megasphaera
           micronuciformis F0359]
 gi|310620519|gb|EFQ04089.1| signal recognition particle-docking protein FtsY [Megasphaera
           micronuciformis F0359]
          Length = 315

 Score =  195 bits (495), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 122/299 (40%), Positives = 182/299 (60%), Gaps = 4/299 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL      T   L  GI T ++    +DD + ++LE +++  DIG+     ++E+
Sbjct: 1   MGFFSKLKDSLEKTKKSLFTGIETVVLGYANIDDEMYDDLEAVMLTGDIGIETTDYLLEQ 60

Query: 70  LLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +     +K++     V+  + +++ K+L    +P   D      VI +VGVNGVGKTT I
Sbjct: 61  IREGVKSKEIKDGSDVVPYLEKVVVKLLEENDEP-EQDMEG-TKVIFIVGVNGVGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K  ++ G  VM+AAGDTFR+AA DQL IWA R     +    G+DAAA+ Y+A   
Sbjct: 119 GKLAKYYTEHGKSVMIAAGDTFRAAASDQLTIWAQRVGVPIIKHREGADAAAVVYDATAS 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+  D+L++DTAGRLH  + LM  + KM RV  +    APH  L VLDATTGQNA+ Q
Sbjct: 179 AKARHADILLVDTAGRLHTKNNLMEELRKMARVAAKNVEGAPHETLLVLDATTGQNAVSQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            ++F  V   TG+++TK+DGTA+GG ++ I     +PV ++GVGEG +DL+PF A  F+
Sbjct: 239 AKLFGEVVPLTGVVLTKLDGTAKGGIVLSIKRILGVPVRWVGVGEGADDLQPFDAAQFA 297


>gi|139474212|ref|YP_001128928.1| cell division protein FtsY [Streptococcus pyogenes str. Manfredo]
 gi|134272459|emb|CAM30716.1| putative cell division protein FtsY [Streptococcus pyogenes str.
           Manfredo]
          Length = 516

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 111/259 (42%), Positives = 158/259 (61%), Gaps = 6/259 (2%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP--FNWDFSH 109
           +LI SD+GV VA  + EEL  +   ++      L  V  ++ K++    K   +N   ++
Sbjct: 251 MLILSDVGVHVATTLTEELRYEAKLENAKKPDALKRV--IVEKLVGIYEKDGRYNEAINY 308

Query: 110 RP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +    V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R   
Sbjct: 309 QDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDV 368

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +     +D A++ ++  ++A AK VD+L+IDTAGRL N   LMA + KM R++KR+ P
Sbjct: 369 PVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLP 428

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV 
Sbjct: 429 DAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVK 488

Query: 288 FLGVGEGINDLEPFVAKDF 306
           F+G GE ++D+  F ++DF
Sbjct: 489 FIGFGEKVDDIGEFHSEDF 507


>gi|258645803|ref|ZP_05733272.1| signal recognition particle-docking protein FtsY [Dialister invisus
           DSM 15470]
 gi|260403173|gb|EEW96720.1| signal recognition particle-docking protein FtsY [Dialister invisus
           DSM 15470]
          Length = 313

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 126/310 (40%), Positives = 187/310 (60%), Gaps = 9/310 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + ++ K+  G   T   L + I T +I   ++DD   E+LE +L+  D+GV     ++ +
Sbjct: 1   MGFLDKVRNGLKKTKESLIKNIETVVIGYAKIDDDFLEDLEMVLLSGDLGVRTTDYLMRQ 60

Query: 70  LLTKRYAKD---VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  +R   +    S   V+  + + +  ML    K    D SH P V LVVGVNGVGKTT
Sbjct: 61  I--RRGVTEGMISSTNEVMPFMEKTVVNMLTEDGKE---DISHHPEVYLVVGVNGVGKTT 115

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKLS +    G KV+LAA DTFR+AA +QL IWA RT AD V    G+D AA+A++A 
Sbjct: 116 TIGKLSAQFRKEGKKVLLAAADTFRAAASEQLSIWAKRTGADIVKHAEGADPAAVAFDAV 175

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+  DV++IDTAGRL     LM  + K+ RV+K++ P APH  + VLDATTGQNA+
Sbjct: 176 SAAKARGSDVVLIDTAGRLQTKVNLMEELAKISRVVKKVIPDAPHQTILVLDATTGQNAV 235

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F  +   TG+++TK+DGTA+GG ++ I     +P+ ++G+GE  +DL+ F A +F
Sbjct: 236 SQAQNFGEIVPLTGVVLTKLDGTAKGGVVLSIHEELHVPIRWIGLGEREDDLQRFNALEF 295

Query: 307 SAVITGCLDY 316
           +  +    D+
Sbjct: 296 AKALFETEDH 305


>gi|332074854|gb|EGI85326.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae GA41301]
 gi|332200691|gb|EGJ14763.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae GA41317]
          Length = 401

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 155/257 (60%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++     VL  V  +I K++    K  ++D    F  
Sbjct: 138 IMSDVGVQVASNLTEELRYEAKLENAKKPDVLRRV--IIEKLVELYEKDGSYDESIHFQD 195

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 196 NLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 255

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 256 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 315

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 316 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 375

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 376 GFGEKIDDIGEFNSENF 392


>gi|306827790|ref|ZP_07461061.1| cell division protein FtsY [Streptococcus pyogenes ATCC 10782]
 gi|304430014|gb|EFM33052.1| cell division protein FtsY [Streptococcus pyogenes ATCC 10782]
          Length = 516

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 111/260 (42%), Positives = 159/260 (61%), Gaps = 8/260 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFS 108
           +LI SD+GV VA  + EEL   RY   +   +    +  +I + L+ + +    +N   +
Sbjct: 251 MLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAIN 307

Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           ++    V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R  
Sbjct: 308 YQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVD 367

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D A++ ++  ++A AK VD+L+IDTAGRL N   LMA + KM R++KR+ 
Sbjct: 368 VPVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVL 427

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV
Sbjct: 428 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPV 487

Query: 287 YFLGVGEGINDLEPFVAKDF 306
            F+G GE ++D+  F ++DF
Sbjct: 488 KFIGFGEKVDDIGEFHSEDF 507


>gi|110004076|emb|CAK98415.1| cell division protein ftsy [Spiroplasma citri]
          Length = 328

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 115/294 (39%), Positives = 172/294 (58%), Gaps = 13/294 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL K    T L     I  +    ++ DD   EELE++LI SD+G+ +  +I  ++  K+
Sbjct: 18  KLEKALRKTRLTFSNDIKKLAHKYKKYDDQYLEELEEILIASDMGMNMVLQITNQI-RKK 76

Query: 75  YAKDVSVQRVLYDVSELIHKMLM-----PLSKPFNWDFS-HRPHVILVVGVNGVGKTTVI 128
             K  S++    D ++ + +++M     P SK    +    R +VIL+VGVNG GKTT I
Sbjct: 77  VRKGWSIE----DTNDYLVEVIMDLYNDPKSKQNKLNIKDQRLNVILMVGVNGAGKTTTI 132

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFK 187
            KL+K+  D    V+L AGDTFR+ A++QL  WA+R   + V   + G D A++ Y+   
Sbjct: 133 AKLAKQFLDQKKSVLLVAGDTFRAGAVEQLNQWAERLYVNIVKPLKEGQDPASVIYDGLV 192

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           Q + ++VD++IIDTAGRL N   LM  + K+ R++KR  P APH  L V+D  TGQN + 
Sbjct: 193 QGKKEQVDIIIIDTAGRLQNKVNLMNELNKINRIIKREIPDAPHETLLVIDGVTGQNGIS 252

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           Q + F  V   +G+++TKMDGTA+GG ++ I     IPV  +G+GE   DL+ F
Sbjct: 253 QAKNFSEVTDVSGIVLTKMDGTAKGGVVLAIKDQLNIPVKLIGLGEQPVDLQEF 306


>gi|307704940|ref|ZP_07641831.1| signal recognition particle-docking protein FtsY [Streptococcus
           mitis SK597]
 gi|307621554|gb|EFO00600.1| signal recognition particle-docking protein FtsY [Streptococcus
           mitis SK597]
          Length = 420

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N+D    F  
Sbjct: 157 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDESIHFQD 214

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 215 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 274

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 275 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 334

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 335 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 394

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 395 GFGEKIDDIGEFNSENF 411


>gi|94993890|ref|YP_601988.1| cell division protein ftsY [Streptococcus pyogenes MGAS10750]
 gi|94547398|gb|ABF37444.1| Cell division protein ftsY [Streptococcus pyogenes MGAS10750]
          Length = 516

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 111/260 (42%), Positives = 159/260 (61%), Gaps = 8/260 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFS 108
           +LI SD+GV VA  + EEL   RY   +   +    +  +I + L+ + +    +N   +
Sbjct: 251 MLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAIN 307

Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           ++    V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R  
Sbjct: 308 YQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVD 367

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D A++ ++  ++A AK VD+L+IDTAGRL N   LMA + KM R++KR+ 
Sbjct: 368 VPVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVL 427

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV
Sbjct: 428 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPV 487

Query: 287 YFLGVGEGINDLEPFVAKDF 306
            F+G GE ++D+  F ++DF
Sbjct: 488 KFIGFGEKVDDIGEFHSEDF 507


>gi|15674659|ref|NP_268833.1| putative signal recognition particle [Streptococcus pyogenes M1
           GAS]
 gi|50913842|ref|YP_059814.1| cell division protein ftsY [Streptococcus pyogenes MGAS10394]
 gi|71910285|ref|YP_281835.1| cell division protein [Streptococcus pyogenes MGAS5005]
 gi|13621775|gb|AAK33554.1| putative signal recognition particle (docking protein)
           [Streptococcus pyogenes M1 GAS]
 gi|50902916|gb|AAT86631.1| Cell division protein ftsY [Streptococcus pyogenes MGAS10394]
 gi|71853067|gb|AAZ51090.1| cell division protein [Streptococcus pyogenes MGAS5005]
          Length = 516

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 111/260 (42%), Positives = 159/260 (61%), Gaps = 8/260 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFS 108
           +LI SD+GV VA  + EEL   RY   +   +    +  +I + L+ + +    +N   +
Sbjct: 251 MLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAIN 307

Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           ++    V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R  
Sbjct: 308 YQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVD 367

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D A++ ++  ++A AK VD+L+IDTAGRL N   LMA + KM R++KR+ 
Sbjct: 368 VPVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVL 427

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV
Sbjct: 428 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPV 487

Query: 287 YFLGVGEGINDLEPFVAKDF 306
            F+G GE ++D+  F ++DF
Sbjct: 488 KFIGFGEKVDDIGEFHSEDF 507


>gi|209559035|ref|YP_002285507.1| Signal recognition particle receptor protein FtsY alpha subunit
           [Streptococcus pyogenes NZ131]
 gi|209540236|gb|ACI60812.1| Signal recognition particle receptor protein FtsY alpha subunit
           [Streptococcus pyogenes NZ131]
          Length = 516

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/260 (42%), Positives = 159/260 (61%), Gaps = 8/260 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFS 108
           +LI SD+GV VA  + EEL   RY   +   +    +  +I + L+ + +    +N   +
Sbjct: 251 MLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAIN 307

Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           ++    V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R  
Sbjct: 308 YQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVD 367

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D A++ ++  ++A AK VD+L+IDTAGRL N   LMA + KM R++KR+ 
Sbjct: 368 VPVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVL 427

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV
Sbjct: 428 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPV 487

Query: 287 YFLGVGEGINDLEPFVAKDF 306
            F+G GE ++D+  F ++DF
Sbjct: 488 KFIGFGEKVDDIGEFHSEDF 507


>gi|21909937|ref|NP_664205.1| putative signal recognition particle-docking protein FtsY
           [Streptococcus pyogenes MGAS315]
 gi|21904125|gb|AAM79008.1| putative signal recognition particle-docking protein FtsY
           [Streptococcus pyogenes MGAS315]
          Length = 516

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/259 (42%), Positives = 157/259 (60%), Gaps = 6/259 (2%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----F 107
           +LI SD+GV VA  + EEL  +   ++      L  V  ++ K++    K  +++    +
Sbjct: 251 MLILSDVGVHVATTLTEELRYEAKLENAKKPDALKRV--IVEKLVDIYEKDGHYNEAINY 308

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
                V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R   
Sbjct: 309 QDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDV 368

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +     +D A++ ++  ++A AK VD+L+IDTAGRL N   LMA + KM R++KR+ P
Sbjct: 369 PVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLP 428

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV 
Sbjct: 429 DAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVK 488

Query: 288 FLGVGEGINDLEPFVAKDF 306
           F+G GE ++D+  F ++DF
Sbjct: 489 FIGFGEKVDDIGEFHSEDF 507


>gi|71903119|ref|YP_279922.1| cell division protein [Streptococcus pyogenes MGAS6180]
 gi|71802214|gb|AAX71567.1| cell division protein [Streptococcus pyogenes MGAS6180]
          Length = 516

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/260 (42%), Positives = 159/260 (61%), Gaps = 8/260 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFS 108
           +LI SD+GV VA  + EEL   RY   +   +    +  +I + L+ + +    +N   +
Sbjct: 251 MLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAIN 307

Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           ++    V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R  
Sbjct: 308 YQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVD 367

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D A++ ++  ++A AK VD+L+IDTAGRL N   LMA + KM R++KR+ 
Sbjct: 368 VPVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVL 427

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV
Sbjct: 428 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPV 487

Query: 287 YFLGVGEGINDLEPFVAKDF 306
            F+G GE ++D+  F ++DF
Sbjct: 488 KFIGFGEKVDDIGEFHSEDF 507


>gi|322375334|ref|ZP_08049847.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           C300]
 gi|321279597|gb|EFX56637.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           C300]
          Length = 351

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 155/257 (60%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N+D    F  
Sbjct: 88  IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQD 145

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ + + AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 146 GLTVMLFVGVNGVGKTTSIGKLAHRYNQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 205

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 206 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 265

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 266 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 325

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 326 GFGEKIDDIGEFNSENF 342


>gi|28896366|ref|NP_802716.1| signal recognition particle (docking protein) [Streptococcus
           pyogenes SSI-1]
 gi|28811617|dbj|BAC64549.1| putative signal recognition particle (docking protein)
           [Streptococcus pyogenes SSI-1]
          Length = 516

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/259 (42%), Positives = 157/259 (60%), Gaps = 6/259 (2%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----F 107
           +LI SD+GV VA  + EEL  +   ++      L  V  ++ K++    K  +++    +
Sbjct: 251 MLILSDVGVHVATTLTEELRYEAKLENAKKPDALKRV--IVEKLVDIYEKDGHYNEAINY 308

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
                V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R   
Sbjct: 309 QDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDV 368

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +     +D A++ ++  ++A AK VD+L+IDTAGRL N   LMA + KM R++KR+ P
Sbjct: 369 PVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLP 428

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV 
Sbjct: 429 DAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVK 488

Query: 288 FLGVGEGINDLEPFVAKDF 306
           F+G GE ++D+  F ++DF
Sbjct: 489 FIGFGEKVDDIGEFHSEDF 507


>gi|331269656|ref|YP_004396148.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum BKT015925]
 gi|329126206|gb|AEB76151.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum BKT015925]
          Length = 302

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 189/296 (63%), Gaps = 3/296 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   KL  G A T     E +++++  + ++DD + EELE++LI +DIGV  + ++++ +
Sbjct: 4   NLFNKLKDGLAKTKNNFTEKVSEVLKLAVKIDDELFEELEEILITADIGVDTSLEVIDRV 63

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K   K ++  + +YD   L   ++  L++    +    P  ILV+GVNG GKTT IGK
Sbjct: 64  RDKVKEKRITDPKEVYDC--LKEVLIEILTEEDKKEEGSMPKTILVIGVNGAGKTTSIGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +S K+   G KV++AA DTFR+AAIDQL++W++R+  D +  + GSD A++ ++A + ++
Sbjct: 122 ISHKLKHEGHKVIMAAADTFRAAAIDQLEVWSNRSGVDIIRHQEGSDPASVVFDAIQASK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K DVLI DTAGRLHN   LM  + K+ R++ R    +    L VLD TTGQNAL+Q +
Sbjct: 182 ARKADVLICDTAGRLHNKKNLMNELEKINRIIDREYSDSNKETLLVLDGTTGQNALQQAK 241

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F  V    G+++TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F A+ F
Sbjct: 242 QFAEVCPIDGIVITKLDGTAKGGVIIAIKHQLDIPVKFIGVGEGIDDLQEFDAESF 297


>gi|300214421|gb|ADJ78837.1| Cell division protein [Lactobacillus salivarius CECT 5713]
          Length = 423

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/260 (42%), Positives = 154/260 (59%), Gaps = 8/260 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDF 107
           LI +D+G   A KI +EL  +   ++   +  + D   +I K++         +  N  F
Sbjct: 153 LIEADVGFETAMKISDELRQEVKLRNAKKKNEISDA--IIEKLVEIYENEGKEEDNNLHF 210

Query: 108 S-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S   P V L VGVNGVGKTT IGKL+ +    G KVMLAA DTFR+ AI+QL  W  R  
Sbjct: 211 SSEEPTVFLFVGVNGVGKTTTIGKLAHRYKMEGKKVMLAAADTFRAGAIEQLAEWGRRVG 270

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              V     SD AA+ ++A K+A+ +  D+L++DTAGRL N   LM  + K+ RV+ R  
Sbjct: 271 VTVVKKVEKSDPAAVVFDAVKKAKEEDYDILLVDTAGRLQNKVNLMKELEKIARVITREI 330

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL  LDATTGQNAL Q + F  V   TG+++TK+DGTA+GG ++ I     +PV
Sbjct: 331 PDAPHEVLLALDATTGQNALTQAKQFKDVTNVTGIVLTKLDGTAKGGIVLAIRNELHLPV 390

Query: 287 YFLGVGEGINDLEPFVAKDF 306
             +G+GE ++DL  F  +++
Sbjct: 391 KLVGLGEKMDDLRDFSPEEY 410


>gi|317050690|ref|YP_004111806.1| signal recognition particle-docking protein FtsY
           [Desulfurispirillum indicum S5]
 gi|316945774|gb|ADU65250.1| signal recognition particle-docking protein FtsY
           [Desulfurispirillum indicum S5]
          Length = 353

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 183/301 (60%), Gaps = 7/301 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L    + TS  L + I  ++  +  +DD   +ELE++ + +D+GV    +I++ L+ + 
Sbjct: 44  RLKSRLSRTSSALTQRIEALVPGKTTIDDEYLDELEEVFLSADVGVKTTMEIMD-LVREN 102

Query: 75  YAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLS 132
             + +   +V  D+   + + +   +S P   +    +PHVILV+GVNG GKTT  GKL+
Sbjct: 103 VGRSL---KVPGDIQPFLRREIGRMISLPAKAETEPAKPHVILVIGVNGSGKTTTTGKLA 159

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            K    G KV+LAA DTFR+AAI+QL +WA+RT A  V  + G+D +A+AY+A K A ++
Sbjct: 160 HKFIGQGKKVVLAAADTFRAAAIEQLAMWAERTGAHIVKHQHGADPSAVAYDATKAALSR 219

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DVL+IDTAGRLH  S LM  + K+ RV+ R  P APH    VLD TTGQNAL Q   F
Sbjct: 220 HADVLLIDTAGRLHTKSNLMDELSKIERVIGRDIPGAPHETWLVLDGTTGQNALNQARQF 279

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                 TG ++TK+D T++GG +I I+    +PV ++G+GEG+ DL+ F A+ F   I G
Sbjct: 280 LQSVKITGFVLTKLDSTSKGGAIIGIIRELGVPVRYIGIGEGVEDLQEFDAESFVDAIFG 339

Query: 313 C 313
            
Sbjct: 340 V 340


>gi|297588524|ref|ZP_06947167.1| cell division protein FtsY [Finegoldia magna ATCC 53516]
 gi|297573897|gb|EFH92618.1| cell division protein FtsY [Finegoldia magna ATCC 53516]
          Length = 378

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/319 (38%), Positives = 187/319 (58%), Gaps = 18/319 (5%)

Query: 6   VASESLSWIRKLTK-GF----ASTSLKLKEGITDIISS-----RRLDDGVREELEDLLIR 55
           V SE ++  ++  K GF     ++ LK ++ I++ I       R +D+ + EE+E+ LI 
Sbjct: 62  VESEEINEDKEENKEGFFEKLKNSLLKTRDNISNKIDQVLANYRTVDEELFEEIEETLIS 121

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           +DIGV    KIV +L  K    ++     ++ VL D+   + + ++      N +   + 
Sbjct: 122 ADIGVETTLKIVGQLRDKVKLNNIQDPSKIKNVLADI---LKENIINDKIDNNLNVDDKT 178

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            +ILVVGVNGVGKTT IGKL+ K    G KV++ A DTFR+AAI+QL  WA+R   D + 
Sbjct: 179 -IILVVGVNGVGKTTTIGKLAMKFKKDGKKVLMVAADTFRAAAIEQLTEWANRAKVDIIS 237

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            + GSD A++ ++     +++  D+LI DTAGRLHN   LM  + K+ RV+++  P A  
Sbjct: 238 HKEGSDPASVVFDGVSAMKSRNADILICDTAGRLHNKKNLMNELNKIKRVIEKEYPEAKK 297

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            +L ++D TTGQNA+ Q + F      TG I+TK+DGTA+GG + P+ +   IPV F+G+
Sbjct: 298 EILLIVDGTTGQNAIIQAKEFMNATDLTGAIITKLDGTAKGGMIFPLEMELGIPVKFIGI 357

Query: 292 GEGINDLEPFVAKDFSAVI 310
           GE +NDL  F  + F   I
Sbjct: 358 GEQVNDLVKFEPEKFIEAI 376


>gi|34556528|ref|NP_906343.1| signal recognition particle protein [Wolinella succinogenes DSM
           1740]
 gi|34482242|emb|CAE09243.1| SIGNAL RECOGNITION PARTICLE PROTEIN [Wolinella succinogenes]
          Length = 300

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 169/287 (58%), Gaps = 7/287 (2%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93
           ++++ +R     +E LE++LI SD+   + + ++E L  +   +++ V    +   E  +
Sbjct: 17  ELLAPKRASKISKELLEEILITSDMEYELVESLLEPLGEEVSQRELEVALHRFFRGESYY 76

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             + P           RP + LV+GVNG GKTT I KL+      G  V+L AGDTFR+A
Sbjct: 77  DRIAP------KRIEARPCITLVMGVNGAGKTTTIAKLTSLYQREGKSVLLGAGDTFRAA 130

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           AI+QLK+WA+R +A  V ++ G D +A+AY+      A+KVD +IIDTAGRLHN + L  
Sbjct: 131 AIEQLKLWAERLNAGIVYTQQGHDPSAVAYDTIISGVARKVDHVIIDTAGRLHNQTNLKN 190

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ +   +    APH  L VLD T G +A+ Q ++FH   G  G+I+TK+DGT++GG
Sbjct: 191 ELIKIAKTCDKAFSGAPHQKLLVLDGTQGSSAIDQAKIFHETLGVDGIIITKLDGTSKGG 250

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320
            L  I+   ++P+ ++GVGE   DL PF  +++   + G + + EEK
Sbjct: 251 ALFSIMQRLRVPILYIGVGERAEDLIPFSEEEYVKTLLGAI-FDEEK 296


>gi|302386301|ref|YP_003822123.1| signal recognition particle-docking protein FtsY [Clostridium
           saccharolyticum WM1]
 gi|302196929|gb|ADL04500.1| signal recognition particle-docking protein FtsY [Clostridium
           saccharolyticum WM1]
          Length = 313

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/304 (41%), Positives = 185/304 (60%), Gaps = 4/304 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   +  KL  G   T   +  G+  I S    +DD   EE+E++LI  D+G+     I+
Sbjct: 3   EKKGFFGKLVAGLQKTRDNIIAGVDSIFSGFSAIDDEFYEEIEEILIMGDLGIQTTMSIM 62

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTT 126
           EEL  ++  K+ +++  L     L+  ++  +    N ++F  +  V+LV+GVNGVGKTT
Sbjct: 63  EEL--RKKVKEQNIKDPLECKQLLMDSIMEQMDLGENAYEFEKQRSVLLVIGVNGVGKTT 120

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL+ +M D G KV++AA DTFR+AAI+QL  WA R   D +  + GSD AA+ ++A 
Sbjct: 121 SVGKLAGQMKDDGKKVIVAAADTFRAAAIEQLSEWAKRAGVDIIAQQEGSDPAAVVFDAV 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+++  D+LI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQNAL
Sbjct: 181 AAAKSRHADILICDTAGRLHNKKNLMEELKKINRIIDKEYPEAYRETLVVLDGTTGQNAL 240

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F  VA  TG+I+TK+DGTA+GG  + I     IPV ++GVGE I+DL+ F AK+F
Sbjct: 241 VQAKQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYIGVGEKIDDLQKFNAKEF 300

Query: 307 SAVI 310
            + +
Sbjct: 301 VSAL 304


>gi|322389956|ref|ZP_08063496.1| cell division protein FtsY [Streptococcus parasanguinis ATCC 903]
 gi|321143392|gb|EFX38830.1| cell division protein FtsY [Streptococcus parasanguinis ATCC 903]
          Length = 552

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K   ++    F  
Sbjct: 289 IMSDVGVQVASNLTEELRYEARLENAKKPDALKRV--IIEKLVDLYEKDGQFNEAIRFQD 346

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     
Sbjct: 347 GLTVMLFVGVNGVGKTTSIGKLAHRYKQEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 406

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     SD A++ ++  ++A A+ +DVL+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 407 VTGPEKSDPASVVFDGIERAIAENIDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 466

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH  L  LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 467 PHETLLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIREELDIPVKLI 526

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+ PF +++F
Sbjct: 527 GFGEKIDDIGPFHSENF 543


>gi|315613256|ref|ZP_07888165.1| signal recognition particle-docking protein FtsY [Streptococcus
           sanguinis ATCC 49296]
 gi|315314491|gb|EFU62534.1| signal recognition particle-docking protein FtsY [Streptococcus
           sanguinis ATCC 49296]
          Length = 429

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N+D    F  
Sbjct: 166 ILSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQD 223

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 224 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 404 GFGEKIDDIGEFNSENF 420


>gi|303242099|ref|ZP_07328590.1| signal recognition particle-docking protein FtsY [Acetivibrio
           cellulolyticus CD2]
 gi|302590393|gb|EFL60150.1| signal recognition particle-docking protein FtsY [Acetivibrio
           cellulolyticus CD2]
          Length = 302

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/298 (43%), Positives = 193/298 (64%), Gaps = 4/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL +G   T   + E I  + +S  ++D+ + EELE++LI SD+G   + +I+E+
Sbjct: 1   MGFFDKLKEGLKKTKNVITERIDQVLVSFGKIDEELFEELEEVLITSDVGAETSLRIIED 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  K+  KD  V   L     L  ++   LSK     +    P VI+VVGVNGVGKTT I
Sbjct: 61  I--KKKVKDNKVTDPLKVKGLLKEELSEILSKESTELNIKTTPSVIVVVGVNGVGKTTSI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++ ++  +G KV++AAGDTFR+AAIDQL+IWADR   D +    G+D AA+ Y+A + 
Sbjct: 119 GKIANQLKQSGKKVVMAAGDTFRAAAIDQLEIWADRVGVDLIKHAEGADPAAVIYDAVQS 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+K DVLI DTAGRLH    LM  + K+ R+++R  P+A   VL VLDATTGQNA+ Q
Sbjct: 179 VKARKADVLICDTAGRLHTKKNLMDELKKVFRIIERELPNASMEVLLVLDATTGQNAIVQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            + F  V+  +G+++TK+DGTA+GG +I +    KIPV  +GVGE ++DL+ F +++F
Sbjct: 239 AKTFAEVSPVSGIVLTKLDGTAKGGIVIAVSSELKIPVKLIGVGEQMDDLQRFNSEEF 296


>gi|266623886|ref|ZP_06116821.1| signal recognition particle-docking protein FtsY [Clostridium
           hathewayi DSM 13479]
 gi|288864299|gb|EFC96597.1| signal recognition particle-docking protein FtsY [Clostridium
           hathewayi DSM 13479]
          Length = 313

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/305 (41%), Positives = 184/305 (60%), Gaps = 12/305 (3%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
           SE   +  KL  G   T   +  G+  I S    +DD   EE+E+ LI  D+G+     I
Sbjct: 2   SEKKGFFGKLVAGLQKTRDNIISGMDSIFSGFSAIDDEFYEEIEETLIMGDLGIQTTMSI 61

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGVNG 121
           VE+L  ++  K+  ++    D SE    ++  +    +     +++ +R  V+L++GVNG
Sbjct: 62  VEDL--RKKVKEQGIK----DPSECKELLMESIRDQMDLGENAYEYENRQSVLLIIGVNG 115

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT +GKL+ ++ D G KV+LAA DTFR+AAI+QL  WA+R   D +  + GSD AA+
Sbjct: 116 VGKTTSVGKLAGQLKDDGKKVILAAADTFRAAAIEQLTEWANRAGVDIIAQQEGSDPAAV 175

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A   A++++ D+LI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TT
Sbjct: 176 VYDAVAAAKSRRADILICDTAGRLHNKKNLMEELKKINRIIDKEFPEAYRETLVVLDGTT 235

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q   F  VA  TG+I+TK+DGTA+GG  + I     IPV ++GVGE I+DL+ F
Sbjct: 236 GQNALSQARQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYVGVGEKIDDLQKF 295

Query: 302 VAKDF 306
            A++F
Sbjct: 296 NAEEF 300


>gi|168491164|ref|ZP_02715307.1| cell division protein FtsY [Streptococcus pneumoniae CDC0288-04]
 gi|183574535|gb|EDT95063.1| cell division protein FtsY [Streptococcus pneumoniae CDC0288-04]
          Length = 425

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N+D    F  
Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKGGNYDERIHFQA 219

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 220 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 400 GFGEKIDDIGEFNSENF 416


>gi|33520063|ref|NP_878895.1| cell division protein FtsY [Candidatus Blochmannia floridanus]
 gi|33504409|emb|CAD83302.1| cell division protein FtsY [Candidatus Blochmannia floridanus]
          Length = 308

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 183/307 (59%), Gaps = 10/307 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +   KL     +T  K+ + I DI  +R +D      +++ LI+SD+ +   QKI+   
Sbjct: 5   FTLFNKLKTSLLNTRKKIGDSIFDIFHNRIVDHDTINIIKNQLIKSDVNIQTTQKIINNF 64

Query: 71  LTKRYAKDVSVQRVLYDVSELIH----KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
               +       + +Y   E+IH    +++ P+ KP  +  + +P VILV+GVNGVGKTT
Sbjct: 65  KKNTFLNMNLNSKSIY---EIIHHSMLQIMKPVEKPL-FITNQQPFVILVIGVNGVGKTT 120

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-SADFVCSEIGSDAAALAYEA 185
            +GKL+         VM+AAGDT R+AAIDQL  +     S   + +   SD+A++ + A
Sbjct: 121 TVGKLAYHYRSQNKSVMIAAGDTKRAAAIDQLITFTKNIDSISIIANYSTSDSASIIFNA 180

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++A ++ +++LIIDTAGRL NN   +  + K+ + +K++ P+APH  + VLD+  GQN+
Sbjct: 181 MQKALSQNINILIIDTAGRLQNNIHNIQELQKIQQTIKKIQPNAPHETILVLDSNIGQNS 240

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q++ FH+    TG+IMTK+DG+++GG L+ I     IP+ +LG+G+ + DL+ F A +
Sbjct: 241 INQLKTFHSTITITGIIMTKLDGSSKGGVLLSISNCFSIPIRYLGIGQNLEDLQIFNATE 300

Query: 306 F-SAVIT 311
           F  A++T
Sbjct: 301 FIEAILT 307


>gi|304372887|ref|YP_003856096.1| Cell division protein ftsY [Mycoplasma hyorhinis HUB-1]
 gi|304309078|gb|ADM21558.1| Cell division protein ftsY [Mycoplasma hyorhinis HUB-1]
          Length = 380

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 183/309 (59%), Gaps = 11/309 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I K   G    ++ L E + ++  S+ ++D+   E+LE++LI SDI       I++EL  
Sbjct: 68  IDKYVAGLTKANISLSEQLIELQRSKLKVDEEYFEQLEEILIMSDISPFFVDVIIDELKK 127

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTT 126
           +   +++S  ++   ++ELI   +  +    +   +H      R ++IL++GVNG GKTT
Sbjct: 128 EVKKQNISDSKL---INELIADKMYTIYANRSIINTHLNIKDGRLNIILMIGVNGSGKTT 184

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEA 185
            I K++ ++   G K+++AAGDTFR+AA++QL+IWA+R  AD +       D  ++ Y A
Sbjct: 185 SISKIANQLKKEGKKILIAAGDTFRAAAVEQLEIWANRVGADILKPNPNEFDPGSVVYRA 244

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++A+++  DVLIIDTAGRL N   LM  + K+ +V++   P APH  L VLDATTGQN 
Sbjct: 245 IEKAESENYDVLIIDTAGRLQNKVNLMNELKKVNKVIQNKYPDAPHESLLVLDATTGQNG 304

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F      +G+++TKMDGT++GG +  I     + V  +G+GE ++DL+ F   +
Sbjct: 305 ISQAKHFKEATPVSGIVLTKMDGTSKGGIIFSIKDELDMDVKLIGLGEKMDDLQEFNLDN 364

Query: 306 FSAVITGCL 314
           F   +T  L
Sbjct: 365 FIYALTKDL 373


>gi|313679649|ref|YP_004057388.1| signal recognition particle-docking protein ftsy [Oceanithermus
           profundus DSM 14977]
 gi|313152364|gb|ADR36215.1| signal recognition particle-docking protein FtsY [Oceanithermus
           profundus DSM 14977]
          Length = 305

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 177/302 (58%), Gaps = 10/302 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +SW  +L +G   TS  L    T  +      + V EELE  LI +D+G+   Q+I++E+
Sbjct: 1   MSWFDRLKQGLKKTSQTL----TKAVPWGGDPEEVLEELEFALIAADVGLEATQEILKEV 56

Query: 71  LT--KRYAKDVSVQRVLYDVSELIHKM-LMPLS-KPFNWDFSHRP--HVILVVGVNGVGK 124
               KR  ++   Q ++  +     +  L  L  KP     +  P  HV+L+VGVNGVGK
Sbjct: 57  RESGKRDLREAVKQALVLQLEPDARRAKLRKLGFKPDAKKSTVEPKGHVVLMVGVNGVGK 116

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT I KL +   + G  V+ AAGDTFR+A   QL++W +RT    + +  GSD AALA++
Sbjct: 117 TTTIAKLGRYYKERGKSVLFAAGDTFRAAGGAQLELWGERTGIPVISAPEGSDPAALAFD 176

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K   A+ +D+L +DTAGRLH    LM  + K+ R + + DP  P  V  VLDATTGQN
Sbjct: 177 AAKARAARGMDLLFVDTAGRLHTKHNLMEELKKVKRSIAKADPGEPGEVWLVLDATTGQN 236

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q + F    G TG+I+TK+DGTA+GG L+PIV    +P+ F+GVGE   DL+PF A 
Sbjct: 237 GLEQAKKFDEAVGLTGVIVTKLDGTAKGGVLVPIVRELGVPIRFIGVGESAEDLQPFDAG 296

Query: 305 DF 306
           ++
Sbjct: 297 EY 298


>gi|313665368|ref|YP_004047239.1| signal recognition particle-docking protein FtsY [Mycoplasma
           leachii PG50]
 gi|312949906|gb|ADR24502.1| signal recognition particle-docking protein FtsY [Mycoplasma
           leachii PG50]
          Length = 423

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/271 (38%), Positives = 171/271 (63%), Gaps = 9/271 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           ++ DD   EELED+LIR+D+G+ +  K V  L+ K+  +D S + +   + E +++    
Sbjct: 133 KQADDEFFEELEDVLIRTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 191

Query: 99  ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
               +K ++ DF  +R ++ ++VGVNG GKTT + K++   ++ G KV++AA DTFR+ A
Sbjct: 192 NDWTNKKYHIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 251

Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             QL+ W         D V  +++ +D A++ ++A K+A+ +  D+L+IDTAGRL N   
Sbjct: 252 TQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKVN 311

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LMA + KM +++++++  APH VL V+DATTGQN + Q E F  VA  +G+I+TKMD T+
Sbjct: 312 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 371

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +GG  + I     IP+  +GVGE ++DL  F
Sbjct: 372 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 402


>gi|167765551|ref|ZP_02437615.1| hypothetical protein CLOSS21_00045 [Clostridium sp. SS2/1]
 gi|167712736|gb|EDS23315.1| hypothetical protein CLOSS21_00045 [Clostridium sp. SS2/1]
          Length = 318

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/325 (38%), Positives = 189/325 (58%), Gaps = 14/325 (4%)

Query: 1   MSNQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDI 58
           M+ +++A SE   + ++L +G + T   +      I S    +D+   EELE++LI SD+
Sbjct: 1   MNKRRMAMSEKKGFFKRLAQGLSKTRDNIASSFDSIFSGFSGIDEDFYEELEEILIMSDM 60

Query: 59  GVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           G+     I+E+L  K     +      +++L D   +  +M +  S    +DF  +  V+
Sbjct: 61  GIDTTMNIIEDLKKKVKENKIKEPEECRQLLID--SIKDQMRLEDSA---YDFIDKKSVV 115

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           LV+GVNGVGKTT +GKL+  +   G KV+LAA DTFR+ AI+QLK W++R   D +    
Sbjct: 116 LVIGVNGVGKTTSVGKLAASLKGQGKKVLLAAADTFRAGAIEQLKEWSNRAGVDIISQAE 175

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D AA+ Y+A   A+A+ VDVL+ DTAGRLHN   LM  + K+ R++++    A    L
Sbjct: 176 GADPAAVVYDAVAAAKARDVDVLLCDTAGRLHNKKNLMNELSKINRIIQKEYSEAYLETL 235

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLD TTGQNA+ Q + F      +G+I+TK+DGTA+GG  I I     IPV ++G+GE 
Sbjct: 236 IVLDGTTGQNAMAQAKQFKEATDISGIILTKLDGTAKGGIAIAIQSELGIPVKYIGIGEQ 295

Query: 295 INDLEPFVAKDFSAVITGCLDYGEE 319
           ++DL+ F   D    +    + GEE
Sbjct: 296 VDDLQRF---DPDMFVNALFEKGEE 317


>gi|289450609|ref|YP_003474968.1| signal recognition particle-docking protein FtsY [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185156|gb|ADC91581.1| signal recognition particle-docking protein FtsY [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 304

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/299 (40%), Positives = 183/299 (61%), Gaps = 6/299 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +++  +   G A T   L  GI  I ++    D+ + +ELE+LL+++D+GV  A  ++E+
Sbjct: 1   MAFFERFKAGLAKTRDFLNGGINKISAAMGHFDEDMLDELEELLVQADVGVPCATFLMEK 60

Query: 70  LLTK-RYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +    +  KD S   V+  + E I  +L  PL      D   R ++IL++GVNG GKTT 
Sbjct: 61  VRKDIKVNKDNSRAAVINSLREGIVAVLGDPLKLTLKPD---RLNIILLIGVNGTGKTTT 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+ +   AG KV+LAA DTFR+AAIDQLK WA+ T    +    GSD AA+ Y++ +
Sbjct: 118 CGKLALRYRQAGKKVLLAAADTFRAAAIDQLKYWAELTGTPCIAYPEGSDPAAVVYDSVQ 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DVL++DTAGRLHN   LM  + K+ R++KR  P+A    + ++DA TGQNA+ 
Sbjct: 178 AAKARAADVLLVDTAGRLHNKQNLMDELAKLYRIIKREAPNAALESILIVDANTGQNAVI 237

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q E F+A A  TGLI+TK+DG ++GG  + +    K+P+Y +G+GE   DL  F   +F
Sbjct: 238 QAEKFNAAAQLTGLIITKLDGNSKGGVAVAVANAVKLPIYMVGLGERAEDLADFAVNEF 296


>gi|90961604|ref|YP_535520.1| cell division protein [Lactobacillus salivarius UCC118]
 gi|90820798|gb|ABD99437.1| Cell division protein [Lactobacillus salivarius UCC118]
          Length = 423

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/260 (42%), Positives = 154/260 (59%), Gaps = 8/260 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDF 107
           LI +D+G   A KI +EL  +   ++   +  + D   +I K++         +  N  F
Sbjct: 153 LIEADVGFETAMKISDELRQEVKLRNAKKKNEISDA--IIEKLVEIYENEGKEEDNNLHF 210

Query: 108 SHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S   P V L VGVNGVGKTT IGKL+ +    G KVMLAA DTFR+ AI+QL  W  R  
Sbjct: 211 SSEGPTVFLFVGVNGVGKTTTIGKLAHRYKMEGKKVMLAAADTFRAGAIEQLAEWGRRVG 270

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              V     SD AA+ ++A K+A+ +  D+L++DTAGRL N   LM  + K+ RV+ R  
Sbjct: 271 VTVVKKVEKSDPAAVVFDAVKKAKEEDYDILLVDTAGRLQNKVNLMKELEKIARVITREI 330

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL  LDATTGQNAL Q + F  V   TG+++TK+DGTA+GG ++ I     +PV
Sbjct: 331 PDAPHEVLLALDATTGQNALTQAKQFKDVTNVTGIVLTKLDGTAKGGIVLAIRNELHLPV 390

Query: 287 YFLGVGEGINDLEPFVAKDF 306
             +G+GE ++DL  F  +++
Sbjct: 391 KLVGLGEKMDDLRDFSPEEY 410


>gi|303233305|ref|ZP_07319976.1| signal recognition particle-docking protein FtsY [Atopobium vaginae
           PB189-T1-4]
 gi|302480605|gb|EFL43694.1| signal recognition particle-docking protein FtsY [Atopobium vaginae
           PB189-T1-4]
          Length = 299

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/277 (40%), Positives = 165/277 (59%), Gaps = 13/277 (4%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLM 97
           +DD   E+LED L+  D+G  VA +IV+EL     +   KD S  R       LI K+  
Sbjct: 29  VDDDFWEDLEDRLVMGDVGADVAGQIVDELRLLAAQNNYKDASAIR-----GALIDKLAS 83

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            +       F+  P  +L VG+NG GKTT +GKL+     A  + ++ A DTFR+AAI+Q
Sbjct: 84  YVYVSDIDPFATYPACVLFVGINGAGKTTTVGKLAYAACAAKKRCIIGAADTFRAAAIEQ 143

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++WA R     V  E GSD A++ ++  +QAQ    DV++IDTAGRLH +  LM  + K
Sbjct: 144 LEVWATRAQVPCVTRERGSDPASVCFDTLEQAQQTNADVVLIDTAGRLHTSKDLMQELLK 203

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++ + K+   + P  V+ VLDA+ GQN L Q   F+   G  G+I+TK+DGT++GG  I 
Sbjct: 204 VVTITKK-RANMPVYVVLVLDASCGQNGLVQAREFNEALGLDGMIVTKLDGTSKGG--IA 260

Query: 278 IVVTH--KIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           I  +H  ++P++ +GVGE + DL+PF A DF+A + G
Sbjct: 261 IRASHELQLPIFRIGVGETLEDLQPFSAHDFAAALVG 297


>gi|257063723|ref|YP_003143395.1| signal recognition particle-docking protein FtsY [Slackia
           heliotrinireducens DSM 20476]
 gi|256791376|gb|ACV22046.1| signal recognition particle-docking protein FtsY [Slackia
           heliotrinireducens DSM 20476]
          Length = 304

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 174/308 (56%), Gaps = 13/308 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +SW  ++  G + +  K +E I  +  S   +DD   + LE+ LI SD+G   A KIVEE
Sbjct: 1   MSWFDRMKAGLSKSREKFQESINVLTFSGPDVDDDFWDNLEETLIMSDMGARAATKIVEE 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGVNGVGK 124
           +      KD + ++ L +   ++  +   ++  F            P  +L+VGVNG GK
Sbjct: 61  M------KDTTQRKALANADAIMDVLCDRIADTFTVAKDGEGLDQDPLCLLLVGVNGSGK 114

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GK++ +    G  V+L A DTFR+AAI+QL+ WA R+    V  E GSD A++ YE
Sbjct: 115 TTTAGKMAAEAKGNGKTVVLGAADTFRAAAIEQLEEWARRSDVTIVERERGSDPASVCYE 174

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             + A+ +  D++++DTAGRLH ++ LM  + K+  V+++     P   + V+DATTGQN
Sbjct: 175 TLEVAEREGADLVVVDTAGRLHTSADLMRELQKVTSVVRKR-AACPVMTVLVIDATTGQN 233

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q   F+      G+I+TK+DGTA+GG  + I     +P+  +GVGEGI DL  F A 
Sbjct: 234 GLVQARTFNDALDLDGVIVTKLDGTAKGGIALAISYELGLPILKIGVGEGIEDLRDFDAH 293

Query: 305 DFSAVITG 312
           DF+  +TG
Sbjct: 294 DFARALTG 301


>gi|307708793|ref|ZP_07645255.1| cell division protein FtsY [Streptococcus mitis NCTC 12261]
 gi|307615159|gb|EFN94370.1| cell division protein FtsY [Streptococcus mitis NCTC 12261]
          Length = 429

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N+D    F  
Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDERIHFQD 223

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 224 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A ++ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 284 VTGAEKADPASVVFDGMERAVSEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 404 GFGEKIDDIGEFNSENF 420


>gi|312868303|ref|ZP_07728503.1| signal recognition particle-docking protein FtsY [Streptococcus
           parasanguinis F0405]
 gi|311096048|gb|EFQ54292.1| signal recognition particle-docking protein FtsY [Streptococcus
           parasanguinis F0405]
          Length = 553

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K   ++    F  
Sbjct: 290 IMSDVGVQVASNLTEELRYEARLENAKKPDALKRV--IIEKLVDLYEKDGQFNEAIRFQD 347

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     
Sbjct: 348 GLTVMLFVGVNGVGKTTSIGKLAHRYKQEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 407

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     SD A++ ++  ++A A+ +DVL+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 408 VTGPEKSDPASVVFDGMERAIAENIDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPDA 467

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH  L  LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 468 PHETLLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIREELDIPVKLI 527

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+ PF +++F
Sbjct: 528 GFGEKIDDIGPFHSENF 544


>gi|296876113|ref|ZP_06900167.1| cell division protein FtsY [Streptococcus parasanguinis ATCC 15912]
 gi|296432824|gb|EFH18617.1| cell division protein FtsY [Streptococcus parasanguinis ATCC 15912]
          Length = 552

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K   ++    F  
Sbjct: 289 IMSDVGVQVASNLTEELRYEARLENAKKPDALKRV--IIEKLVDLYEKDGQFNEAIRFQD 346

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     
Sbjct: 347 GLTVMLFVGVNGVGKTTSIGKLAHRYKQEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 406

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     SD A++ ++  ++A A+ +DVL+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 407 VTGPEKSDPASVVFDGMERAIAENIDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPDA 466

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH  L  LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 467 PHETLLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIREELDIPVKLI 526

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+ PF +++F
Sbjct: 527 GFGEKIDDIGPFHSENF 543


>gi|94989975|ref|YP_598075.1| cell division protein ftsY [Streptococcus pyogenes MGAS10270]
 gi|94543483|gb|ABF33531.1| Cell division protein ftsY [Streptococcus pyogenes MGAS10270]
          Length = 516

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/259 (42%), Positives = 157/259 (60%), Gaps = 6/259 (2%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----F 107
           +LI SD+GV VA  + EEL  +   ++      L  V  ++ K++    K  +++    +
Sbjct: 251 MLILSDVGVHVATTLTEELRYEAKLENAKKPDALKRV--IVEKLVDIYEKDGHYNEAINY 308

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
                V+L VGVNGVGKTT IGK++ +    G KVML A DTFR+ A+ QL  W  R   
Sbjct: 309 QDGLTVMLFVGVNGVGKTTSIGKMAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDV 368

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +     +D A++ ++  ++A AK VD+L+IDTAGRL N   LMA + KM R++KR+ P
Sbjct: 369 PVITGPEKADPASVVFDGMEKAVAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLP 428

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV 
Sbjct: 429 DAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVK 488

Query: 288 FLGVGEGINDLEPFVAKDF 306
           F+G GE ++D+  F ++DF
Sbjct: 489 FIGFGEKVDDIGEFHSEDF 507


>gi|47458973|ref|YP_015835.1| cell division protein ftsY [Mycoplasma mobile 163K]
 gi|47458301|gb|AAT27624.1| cell division protein ftsY [Mycoplasma mobile 163K]
          Length = 426

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/281 (40%), Positives = 168/281 (59%), Gaps = 11/281 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
            ++DD   EELE++LI SDI V +   I+EE+      ++VS  +++ ++  +  K+ + 
Sbjct: 139 NKIDDDFFEELEEILIMSDISVNLVFTIIEEIKKVVKIENVSDPKLIGEI--IADKLFVI 196

Query: 99  LSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            +     D +      R +VIL+VGVNG GKTT I KL+        K+++AAGDTFR+ 
Sbjct: 197 YTNNSIVDTNLKIEKGRLNVILMVGVNGSGKTTTIAKLANMYKQKSYKILIAAGDTFRAG 256

Query: 154 AIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           A++QL IWA+R   D V  +  G D +++ ++A ++A+ +  D+LIIDTAGRL N   LM
Sbjct: 257 AVEQLGIWANRLEVDIVKPDKEGQDPSSVVFKAMQKAKDEIYDLLIIDTAGRLQNKVNLM 316

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+ + + R  P APH  L VLDAT GQNAL Q   F  V   +G+++TKMDGT++G
Sbjct: 317 NELAKINQTISRFLPEAPHESLLVLDATNGQNALSQASAFKEVTPLSGIVLTKMDGTSKG 376

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           G +I I     I V  LG+GE ++DL+ F   D  A I G 
Sbjct: 377 GIIISIKDLVNIDVKLLGLGEKMDDLQEF---DLDAFIYGL 414


>gi|168486564|ref|ZP_02711072.1| cell division protein FtsY [Streptococcus pneumoniae CDC1087-00]
 gi|183570449|gb|EDT90977.1| cell division protein FtsY [Streptococcus pneumoniae CDC1087-00]
          Length = 429

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 223

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 404 GFGEKIDDIGEFNSENF 420


>gi|15901105|ref|NP_345709.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae TIGR4]
 gi|111658433|ref|ZP_01409112.1| hypothetical protein SpneT_02000404 [Streptococcus pneumoniae
           TIGR4]
 gi|149012294|ref|ZP_01833363.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP19-BS75]
 gi|182684029|ref|YP_001835776.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae CGSP14]
 gi|303254261|ref|ZP_07340370.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS455]
 gi|303258879|ref|ZP_07344858.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP-BS293]
 gi|303261562|ref|ZP_07347509.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264233|ref|ZP_07350153.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS397]
 gi|303266136|ref|ZP_07352029.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS457]
 gi|303268137|ref|ZP_07353937.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS458]
 gi|14972726|gb|AAK75349.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae TIGR4]
 gi|147763620|gb|EDK70555.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP19-BS75]
 gi|182629363|gb|ACB90311.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae CGSP14]
 gi|301801901|emb|CBW34625.1| putative signal recognition particle 54 FtsY [Streptococcus
           pneumoniae INV200]
 gi|302598755|gb|EFL65792.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS455]
 gi|302637142|gb|EFL67630.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639822|gb|EFL70278.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP-BS293]
 gi|302642354|gb|EFL72701.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS458]
 gi|302644306|gb|EFL74560.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS457]
 gi|302646045|gb|EFL76272.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS397]
          Length = 429

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++     VL  V  +I K++    K  ++D    F  
Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDVLRRV--IIEKLVELYEKDGSYDESIHFQD 223

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A  + +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 284 VTGPEKADPASVVFDGMERAVTEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 404 GFGEKIDDIGEFNSENF 420


>gi|301299283|ref|ZP_07205569.1| signal recognition particle-docking protein FtsY [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853127|gb|EFK80725.1| signal recognition particle-docking protein FtsY [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 423

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/260 (42%), Positives = 154/260 (59%), Gaps = 8/260 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDF 107
           LI +D+G   A KI +EL  +   ++   +  + D   +I K++         +  N  F
Sbjct: 153 LIEADVGFETAMKISDELRQEVKLRNAKKKNEISDA--IIEKLVEIYENEGKEEDNNLHF 210

Query: 108 SHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S   P V L VGVNGVGKTT IGKL+ +    G KVMLAA DTFR+ AI+QL  W  R  
Sbjct: 211 SSEGPTVFLFVGVNGVGKTTTIGKLAHRYKMEGKKVMLAAADTFRAGAIEQLAEWGRRVG 270

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              V     SD AA+ ++A K+A+ +  D+L++DTAGRL N   LM  + K+ RV+ R  
Sbjct: 271 VTVVKKVEKSDPAAVVFDAVKKAKEEDYDILLVDTAGRLQNKVNLMKELEKIARVITREI 330

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL  LDATTGQNAL Q + F  V   TG+++TK+DGTA+GG ++ I     +PV
Sbjct: 331 PDAPHEVLLALDATTGQNALTQAKQFKDVTNVTGIVLTKLDGTAKGGIVLAIRNELHLPV 390

Query: 287 YFLGVGEGINDLEPFVAKDF 306
             +G+GE ++DL  F  +++
Sbjct: 391 KLVGLGEKMDDLRDFSPEEY 410


>gi|148989266|ref|ZP_01820646.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925244|gb|EDK76323.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP6-BS73]
          Length = 425

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 400 GFGEKIDDIGEFNSENF 416


>gi|197117354|ref|YP_002137781.1| signal recognition particle GTPase FtsY [Geobacter bemidjiensis
           Bem]
 gi|197086714|gb|ACH37985.1| signal recognition particle GTPase FtsY [Geobacter bemidjiensis
           Bem]
          Length = 409

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/297 (40%), Positives = 180/297 (60%), Gaps = 3/297 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S+  +L K  + T   +   + T ++  +++D    EELE++LI +D+GV     ++  L
Sbjct: 108 SFFERLKKSLSKTHESIVGRVDTLLLGKKQIDTDTLEELEEILITADLGVKTTVDLIRTL 167

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +    ++     L   + E I   LM  + P       +P VILV+GVNGVGKTT IG
Sbjct: 168 EQRLKRDELQDGEALKKALKEEIQLRLMAHAAPLVVT-DKKPFVILVIGVNGVGKTTTIG 226

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ + +  G KV+LAA DTFR+AA +QL++W+ R  AD V  + G+D +A+ ++A K A
Sbjct: 227 KLAARYAGEGKKVLLAAADTFRAAAAEQLELWSQRVGADIVRHKEGADPSAVVFDACKAA 286

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+  DVLIIDTAGR+H    LM  + K+ RVL R  P APH  L VLDA TGQNAL Q 
Sbjct: 287 VARGTDVLIIDTAGRMHTKVNLMEEMKKIRRVLTREIPDAPHETLLVLDAATGQNALSQA 346

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++F   A  +G+++TK+DG+A+GG ++ +   + +PV F+GVGE ++DL  F    F
Sbjct: 347 KLFKEAAFVSGVVLTKLDGSAKGGVVVAVSNEYALPVRFIGVGESVDDLREFDPAQF 403


>gi|149200421|ref|ZP_01877437.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Lentisphaera araneosa
           HTCC2155]
 gi|149136490|gb|EDM24927.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Lentisphaera araneosa
           HTCC2155]
          Length = 311

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/285 (40%), Positives = 169/285 (59%), Gaps = 3/285 (1%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   T   L      + S+  + D+    +LE  LI +D+GV+V QKI+ ++       
Sbjct: 10  KGLKKTKTALFRSFESVFSNVEKWDEDTYRQLEAALISADLGVSVTQKIIADIKESYNLG 69

Query: 78  DVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           ++     + +++   I  +L   ++P N + ++ P V+L+VGVNG GKTT  GKL+ K+ 
Sbjct: 70  EIKTSEDIINIATTRITSILEDDNRPLNIN-TNGPTVLLMVGVNGAGKTTTTGKLAYKLK 128

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             G  V+LAA DTFR+AAI+QLK W  R     +  + GSDAAA+AY+A   A+AK VD 
Sbjct: 129 QDGKSVLLAACDTFRAAAIEQLKHWGKRIDVPVIAGQHGSDAAAIAYDACASAKAKNVDY 188

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           LIIDTAGR H    LM  + K++RV+++  P APH  + V+D +TG NAL Q   F    
Sbjct: 189 LIIDTAGRQHTRQDLMEELPKILRVIRKNFPEAPHETVLVVDGSTGTNALFQAREFGKAC 248

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             T L +TK+DG+ +GG ++ I   H  P++F+G+GE   DL+PF
Sbjct: 249 EVTSLAVTKLDGSGKGGVVVAIKDEHTFPIHFVGLGESPEDLQPF 293


>gi|313896550|ref|ZP_07830099.1| signal recognition particle-docking protein FtsY [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312974735|gb|EFR40201.1| signal recognition particle-docking protein FtsY [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 312

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/261 (44%), Positives = 167/261 (63%), Gaps = 6/261 (2%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SH 109
           L+ +D+GV   + ++  +      K++   R   D+   + K ++ + +  +  F   + 
Sbjct: 44  LLMADVGVKTTETLIAAVRKGIKQKEI---RSPEDLIPFMEKEIVRILEEGDDTFRMAAQ 100

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            P V+LVVG NGVGKTT IGKLS   S  G  V+LAA DTFR+AAIDQL+IW +RT+A  
Sbjct: 101 EPTVLLVVGTNGVGKTTTIGKLSAYYSRQGKTVLLAAADTFRAAAIDQLEIWGNRTNAQV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V    GSD AA+ ++A + A+A+ VD++I+DTAGRL   S LM  + K+ RV+ R  P A
Sbjct: 161 VKHAEGSDPAAVVFDAMQAAKARGVDIVIVDTAGRLQTKSNLMQELEKIYRVIGREIPGA 220

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH  L VLDA TGQNA+ Q E+F   A  +G+++TK+DGTA+GG  I I     IP+ ++
Sbjct: 221 PHETLLVLDAGTGQNAISQAELFTKAAPVSGVVLTKLDGTAKGGVTIGIKSQLSIPIKWI 280

Query: 290 GVGEGINDLEPFVAKDFSAVI 310
           GVGEG++DL PF A+DF + +
Sbjct: 281 GVGEGVDDLRPFRAEDFVSAL 301


>gi|227890691|ref|ZP_04008496.1| signal recognition particle-docking protein FtsY [Lactobacillus
           salivarius ATCC 11741]
 gi|227867629|gb|EEJ75050.1| signal recognition particle-docking protein FtsY [Lactobacillus
           salivarius ATCC 11741]
          Length = 423

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/260 (42%), Positives = 154/260 (59%), Gaps = 8/260 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDF 107
           LI +D+G   A KI +EL  +   ++   +  + D   +I K++         +  N  F
Sbjct: 153 LIEADVGFETAMKISDELRQEVKLRNAKKKNEISDA--IIEKLVEIYENEGKEEDNNLHF 210

Query: 108 SHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S   P V L VGVNGVGKTT IGKL+ +    G KVMLAA DTFR+ AI+QL  W  R  
Sbjct: 211 SSEGPTVFLFVGVNGVGKTTTIGKLAHRYKMEGKKVMLAAADTFRAGAIEQLAEWGRRVG 270

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              V     SD AA+ ++A K+A+ +  D+L++DTAGRL N   LM  + K+ RV+ R  
Sbjct: 271 VTVVKKVEKSDPAAVVFDAVKKAKEEDYDILLVDTAGRLQNKVNLMKELEKIARVITREI 330

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL  LDATTGQNAL Q + F  V   TG+++TK+DGTA+GG ++ I     +PV
Sbjct: 331 PDAPHEVLLALDATTGQNALTQAKQFKDVTNVTGIVLTKLDGTAKGGIVLAIRNELHLPV 390

Query: 287 YFLGVGEGINDLEPFVAKDF 306
             +G+GE ++DL  F  +++
Sbjct: 391 KLVGLGEKMDDLRDFSPEEY 410


>gi|315221415|ref|ZP_07863336.1| signal recognition particle-docking protein FtsY [Streptococcus
           anginosus F0211]
 gi|315189534|gb|EFU23228.1| signal recognition particle-docking protein FtsY [Streptococcus
           anginosus F0211]
          Length = 490

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/257 (43%), Positives = 155/257 (60%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHRP 111
           I SD+GV VA  + E L  +   ++     VL  V  +I K++    K   FN   + + 
Sbjct: 227 ITSDVGVQVASNLTEALHQEALLENAKKPDVLRRV--IIEKLVDIYEKDGQFNEKINLQD 284

Query: 112 --HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ K   AG  VML A DTFR+ A+ QL  W  R     
Sbjct: 285 GLTVMLFVGVNGVGKTTSIGKLAYKYKQAGKTVMLVAADTFRAGAVAQLVEWGRRVDVPV 344

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     SD A++ Y+  ++A+A+ VD+L+IDTAGRL N   LMA + K+ R++KR+DP A
Sbjct: 345 VTGPEKSDPASVVYDGMERAKAENVDILMIDTAGRLQNKDNLMAELEKIGRIIKRVDPAA 404

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 405 PHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLI 464

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 465 GFGEKIDDIGVFNSENF 481


>gi|163931159|pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
          Length = 302

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/271 (40%), Positives = 164/271 (60%), Gaps = 3/271 (1%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK 101
           D V +ELE+ L+ SD G  +  +IVE L     +  +     + D + E + +ML   + 
Sbjct: 30  DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNS 89

Query: 102 PFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                   R P VI++VGVNG GKTT +GKL+ ++ + G KV++AAGDTFR+AA DQL+I
Sbjct: 90  KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEI 149

Query: 161 WADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           WA+RT  + V +E   + AA +  +A K+ + +  DV++ DT+GRLH N  LM  +    
Sbjct: 150 WAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACK 209

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           + + ++   AP+ +L VLD  TG N L Q   F+ V G TGLI+TK+DG+ARGG ++ +V
Sbjct: 210 KAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVV 269

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
               IPV F+GVGE + DL+PF  + F   I
Sbjct: 270 EELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 300


>gi|118581717|ref|YP_902967.1| signal recognition particle-docking protein FtsY [Pelobacter
           propionicus DSM 2379]
 gi|118504427|gb|ABL00910.1| signal recognition particle-docking protein FtsY [Pelobacter
           propionicus DSM 2379]
          Length = 381

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 185/302 (61%), Gaps = 13/302 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITD-----IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +  +L +G   T    KEG+       ++  + +D    EELE++LI SD+GV    +++
Sbjct: 80  FFERLKQGLQKT----KEGLVGRIDALVLGKKEIDADTLEELEEILITSDVGVKTTVELI 135

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-NWDF-SHRPHVILVVGVNGVGKT 125
             L  +    ++   + L +   L  ++L+ L+      D  S RP V+LV+GVNGVGKT
Sbjct: 136 RTLEQRLGRNELKDGQALKNA--LKEEILLRLNAHHGQLDIGSRRPFVLLVIGVNGVGKT 193

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ + + +G  V+LAA DTFR+AA +QL +W +R+  + +  + G+D +A+ ++A
Sbjct: 194 TTIGKLASRFTGSGKTVLLAAADTFRAAAAEQLVVWGERSGVEVIRHKEGADPSAVVFDA 253

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K A A+ VD+LI+DTAGR+H    LM  + K+ RV+ R  P APH  L V+DA TGQNA
Sbjct: 254 CKAAVARDVDILIVDTAGRMHTKVNLMEEMKKIRRVIDREIPGAPHETLLVVDAATGQNA 313

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q  +F   AG TG+ +TK+DGTA+GG ++ +     +PV ++GVGE I+DL  F  ++
Sbjct: 314 VSQARLFKEAAGVTGIALTKLDGTAKGGVVVAVSHEFALPVRYIGVGEAIDDLRDFSPQE 373

Query: 306 FS 307
           F+
Sbjct: 374 FT 375


>gi|15903166|ref|NP_358716.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae R6]
 gi|116516398|ref|YP_816572.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae D39]
 gi|149002612|ref|ZP_01827544.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP14-BS69]
 gi|194398069|ref|YP_002037844.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae G54]
 gi|237649944|ref|ZP_04524196.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822507|ref|ZP_04598352.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|15458750|gb|AAK99926.1| Cell division protein FtsY [Streptococcus pneumoniae R6]
 gi|116076974|gb|ABJ54694.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae D39]
 gi|147759223|gb|EDK66216.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP14-BS69]
 gi|194357736|gb|ACF56184.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae G54]
          Length = 425

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 400 GFGEKIDDIGEFNSENF 416


>gi|323126814|gb|ADX24111.1| cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 516

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/275 (42%), Positives = 168/275 (61%), Gaps = 12/275 (4%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-------KDVSVQRVLYDVSEL 91
           RR+D+   EELE++LI SD+GV VA  + EEL   RY        K  +++RV+ +    
Sbjct: 238 RRVDEEFFEELEEMLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVD 294

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           I++     ++  N+       V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR
Sbjct: 295 IYEKDGQYNEAINY--QDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFR 352

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           + A+ QL  W  R     +     +D A++ ++  ++A A+  D+L+IDTAGRL N   L
Sbjct: 353 AGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGVEKAVAEGADILLIDTAGRLQNKENL 412

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           MA + KM R++KR+ P APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+
Sbjct: 413 MAELEKMGRIIKRVIPDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAK 472

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GG ++ I     IPV F+G GE ++D+  F ++DF
Sbjct: 473 GGVVLAIRQELDIPVKFIGFGEKMDDIGEFHSEDF 507


>gi|269122872|ref|YP_003305449.1| signal recognition particle-docking protein FtsY [Streptobacillus
           moniliformis DSM 12112]
 gi|268314198|gb|ACZ00572.1| signal recognition particle-docking protein FtsY [Streptobacillus
           moniliformis DSM 12112]
          Length = 297

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/293 (41%), Positives = 183/293 (62%), Gaps = 12/293 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           K  KGF +   KLKE          + D V EELE+LLI++D+G+ +  +IVE L     
Sbjct: 9   KPKKGFFT---KLKE----FFVGEAITDEVYEELEELLIQADLGMKMTLEIVENLEKNVR 61

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKK 134
           +K +  + ++YD  +L+    +   K  + +    R ++ILV+GVNGVGKTT IGK++ K
Sbjct: 62  SKGIKSKELMYDELKLLLSEKLEKFKDNSLNIQKGRLNIILVIGVNGVGKTTSIGKIAMK 121

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           +   G  V++ A DTFR+AAI+Q+++W  R   + +  + GSD AA+ ++    A++K +
Sbjct: 122 LKKEGKSVIIGAADTFRAAAIEQVEMWGQRAGIEVIKQKHGSDPAAVVFDTINTAKSKNI 181

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKR-LDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           DV IIDTAGRLHN   LM  + K+ +++K+ +D +     L V+D+TTGQN L Q  MF+
Sbjct: 182 DVAIIDTAGRLHNKVDLMKELEKIDKIIKQNVDEYES---LIVVDSTTGQNGLEQARMFN 238

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            ++  TG+I+TK DGTA+GG +  IV     PV FLGVGEG++DL+ F  K+F
Sbjct: 239 NISNITGVILTKFDGTAKGGIIFSIVSELNKPVKFLGVGEGVDDLKVFDCKEF 291


>gi|330723529|gb|AEC45899.1| signal recognition particle-docking protein FtsY [Mycoplasma
           hyorhinis MCLD]
          Length = 380

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 182/309 (58%), Gaps = 11/309 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I K   G    ++ L E + ++  S+ + D+   E+LE++LI SDI       I++EL  
Sbjct: 68  IDKYVAGLTKANISLSEQLIELQRSKLKADEEYFEQLEEILIMSDISPFFVDVIIDELKK 127

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTT 126
           +   +++S  ++   ++ELI   +  +    +   +H      R ++IL++GVNG GKTT
Sbjct: 128 EVKKQNISDSKL---INELIADKMYTIYANRSIINTHLNIKDGRLNIILMIGVNGSGKTT 184

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEA 185
            I K++ ++   G K+++AAGDTFR+AA++QL+IWA+R  AD +       D  ++ Y A
Sbjct: 185 SISKIANQLKKEGKKILIAAGDTFRAAAVEQLEIWANRVGADILKPNPNEFDPGSVVYRA 244

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++A+++  DVLIIDTAGRL N   LM  + K+ +V++   P APH  L VLDATTGQN 
Sbjct: 245 IEKAESENYDVLIIDTAGRLQNKVNLMNELKKVNKVIQNKYPDAPHESLLVLDATTGQNG 304

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F      +G+++TKMDGT++GG +  I     + V  +G+GE ++DL+ F   +
Sbjct: 305 ISQAKHFKEATPVSGIVLTKMDGTSKGGIIFSIKDELDMDVKLIGLGEKMDDLQEFNLDN 364

Query: 306 FSAVITGCL 314
           F   +T  L
Sbjct: 365 FIYALTKDL 373


>gi|225859038|ref|YP_002740548.1| cell division protein FtsY [Streptococcus pneumoniae 70585]
 gi|225720698|gb|ACO16552.1| cell division protein FtsY [Streptococcus pneumoniae 70585]
          Length = 425

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 400 GFGEKIDDIGEFNSENF 416


>gi|162329941|pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
           Thaliana
          Length = 359

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/271 (40%), Positives = 164/271 (60%), Gaps = 3/271 (1%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK 101
           D V +ELE+ L+ SD G  +  +IVE L     +  +     + D + E + +ML   + 
Sbjct: 87  DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNS 146

Query: 102 PFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                   R P VI++VGVNG GKTT +GKL+ ++ + G KV++AAGDTFR+AA DQL+I
Sbjct: 147 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEI 206

Query: 161 WADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           WA+RT  + V +E   + AA +  +A K+ + +  DV++ DT+GRLH N  LM  +    
Sbjct: 207 WAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACK 266

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           + + ++   AP+ +L VLD  TG N L Q   F+ V G TGLI+TK+DG+ARGG ++ +V
Sbjct: 267 KAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVV 326

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
               IPV F+GVGE + DL+PF  + F   I
Sbjct: 327 EELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 357


>gi|18406885|ref|NP_566056.1| CPFTSY; 7S RNA binding / GTP binding / nucleoside-triphosphatase/
           nucleotide binding [Arabidopsis thaliana]
 gi|13430426|gb|AAK25835.1|AF360125_1 putative signal recognition particle receptor alpha subunit
           [Arabidopsis thaliana]
 gi|4583548|emb|CAB40382.1| chloroplast FtsY homolog [Arabidopsis thaliana]
 gi|15293185|gb|AAK93703.1| putative signal recognition particle receptor alpha subunit
           [Arabidopsis thaliana]
 gi|20197210|gb|AAC28547.2| putative signal recognition particle receptor (alpha subunit)
           [Arabidopsis thaliana]
 gi|330255505|gb|AEC10599.1| fused signal recognition particle receptor [Arabidopsis thaliana]
          Length = 366

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/271 (40%), Positives = 164/271 (60%), Gaps = 3/271 (1%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK 101
           D V +ELE+ L+ SD G  +  +IVE L     +  +     + D + E + +ML   + 
Sbjct: 94  DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNS 153

Query: 102 PFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                   R P VI++VGVNG GKTT +GKL+ ++ + G KV++AAGDTFR+AA DQL+I
Sbjct: 154 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEI 213

Query: 161 WADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           WA+RT  + V +E   + AA +  +A K+ + +  DV++ DT+GRLH N  LM  +    
Sbjct: 214 WAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACK 273

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           + + ++   AP+ +L VLD  TG N L Q   F+ V G TGLI+TK+DG+ARGG ++ +V
Sbjct: 274 KAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVV 333

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
               IPV F+GVGE + DL+PF  + F   I
Sbjct: 334 EELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 364


>gi|171060174|ref|YP_001792523.1| signal recognition particle-docking protein FtsY [Leptothrix
           cholodnii SP-6]
 gi|170777619|gb|ACB35758.1| signal recognition particle-docking protein FtsY [Leptothrix
           cholodnii SP-6]
          Length = 346

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 125/310 (40%), Positives = 182/310 (58%), Gaps = 20/310 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W+ +L +G   T       I  + +  ++DD + E+LE  L+ +D GV   Q ++ +L  
Sbjct: 43  WLNRLKQGLRRTG----SSIAQVFTGTQIDDALYEDLEAALLVADAGVGATQFLLNDL-- 96

Query: 73  KRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           KR  K+        V   +++ +  +L PL      D + +P VI+V GVNG GKTT IG
Sbjct: 97  KRRVKETRTTDPGAVKALLADALTDLLTPLQGTLKVD-AQQPTVIMVAGVNGAGKTTTIG 155

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++ +++A  KV+LAA DTFR+AA +QL +WADR   + V  E G D AA+ ++A    
Sbjct: 156 KLTRNLAEANCKVLLAAADTFRAAAREQLAVWADRNQVEIVSQE-GGDPAAVCFDAISAG 214

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  DV+I DTAGRL     LM  + K+ R + R  P APH VL V+D  TGQNAL QV
Sbjct: 215 RARGCDVVIADTAGRLATQLHLMEELRKIHRSIGRAMPGAPHEVLLVVDGNTGQNALAQV 274

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK---------IPVYFLGVGEGINDLEP 300
           + F    G TGL++TK+DGTA+GG L  I +  +         +PVYF+GVGE + DL+ 
Sbjct: 275 KAFDTALGLTGLVVTKLDGTAKGGVLAAIALWGRERQARGLGAVPVYFIGVGESLADLQT 334

Query: 301 FVAKDFSAVI 310
           F A++FS  +
Sbjct: 335 FDAREFSQAL 344


>gi|5714433|gb|AAD47910.1|AF120112_1 chloroplast SRP receptor homolog, alpha subunit CPFTSY [Arabidopsis
           thaliana]
          Length = 366

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 111/271 (40%), Positives = 164/271 (60%), Gaps = 3/271 (1%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK 101
           D V +ELE+ L+ SD G  +  +IVE L     +  +     + D + E + +ML   + 
Sbjct: 94  DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNS 153

Query: 102 PFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                   R P VI++VGVNG GKTT +GKL+ ++ + G KV++AAGDTFR+AA DQL+I
Sbjct: 154 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEI 213

Query: 161 WADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           WA+RT  + V +E   + AA +  +A K+ + +  DV++ DT+GRLH N  LM  +    
Sbjct: 214 WAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACK 273

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           + + ++   AP+ +L VLD  TG N L Q   F+ V G TGLI+TK+DG+ARGG ++ +V
Sbjct: 274 KAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVV 333

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
               IPV F+GVGE + DL+PF  + F   I
Sbjct: 334 EELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 364


>gi|149019235|ref|ZP_01834597.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP23-BS72]
 gi|225854709|ref|YP_002736221.1| cell division protein FtsY [Streptococcus pneumoniae JJA]
 gi|147931105|gb|EDK82084.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP23-BS72]
 gi|225722901|gb|ACO18754.1| cell division protein FtsY [Streptococcus pneumoniae JJA]
          Length = 425

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 400 GFGEKIDDIGEFNSENF 416


>gi|220931571|ref|YP_002508479.1| signal recognition particle-docking protein FtsY [Halothermothrix
           orenii H 168]
 gi|219992881|gb|ACL69484.1| signal recognition particle-docking protein FtsY [Halothermothrix
           orenii H 168]
          Length = 322

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/300 (41%), Positives = 182/300 (60%), Gaps = 4/300 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E      +L  G   T     + +T + +SR ++DD + E+LE++LI+SD+GV    K+V
Sbjct: 18  EKEGLFSRLKGGLDKTRSGFIQKVTGLFTSRGKIDDELFEDLEEILIQSDVGVKTTMKLV 77

Query: 68  EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           EEL      K ++    L D+ +E + ++L   S     +     ++++VVGVNG GKTT
Sbjct: 78  EELEEITEEKKITEPEQLIDIFNEELRQILE--SDDNGLELEDGLNILMVVGVNGAGKTT 135

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            I K++++  + G KVMLAAGDTFR+AAIDQLK W DR     +    G+DAAA+A++A 
Sbjct: 136 TIAKIAQRFKNEGKKVMLAAGDTFRAAAIDQLKTWGDRIGVKTIAQAEGADAAAVAFDAI 195

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ VD+LI+DTAGRLH    LM  + K+ RV++R    A   VL VLDATTGQNA+
Sbjct: 196 QSARARGVDLLIVDTAGRLHTQKNLMEELKKVRRVIEREGKGANIEVLLVLDATTGQNAI 255

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F+      G+ +TK+DGTA+GG +I +     IP+  +GVGE   DL+ F    F
Sbjct: 256 NQARLFNEAVQVDGIALTKLDGTAKGGIVIAVKNELGIPIKLIGVGERAEDLQDFKPDRF 315


>gi|301794326|emb|CBW36751.1| putative signal recognition particle 54 FtsY [Streptococcus
           pneumoniae INV104]
          Length = 425

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 400 GFGEKIDDIGEFNSENF 416


>gi|169833825|ref|YP_001694674.1| cell division protein FtsY [Streptococcus pneumoniae Hungary19A-6]
 gi|168996327|gb|ACA36939.1| cell division protein FtsY [Streptococcus pneumoniae Hungary19A-6]
          Length = 425

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 400 GFGEKIDDIGEFNSENF 416


>gi|332201707|gb|EGJ15777.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae GA47368]
          Length = 429

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 223

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 284 VTGSEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 404 GFGEKIDDIGEFNSENF 420


>gi|315187115|gb|EFU20872.1| signal recognition particle-docking protein FtsY [Spirochaeta
           thermophila DSM 6578]
          Length = 289

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 161/270 (59%), Gaps = 6/270 (2%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           R D+   EE EDLLI +D+G   A ++VEE+  +R  K+  V   +  V E+I  +L   
Sbjct: 16  RFDEAFWEEFEDLLIEADLGAETAFEVVEEV-QRRVKKEGVVD--VEGVREVIKDVLRRY 72

Query: 100 SKPFNWDFSHRPHVILV-VGVNGVGKTTVIGKLSKKMSDAGLK--VMLAAGDTFRSAAID 156
            +   +       V+L+ VGVNGVGKTT I K +  +     +  V+LAAGDTFR+ AID
Sbjct: 73  VRAGGFSLPDSGTVVLLFVGVNGVGKTTTIAKCAHFIRSTWGRDDVVLAAGDTFRAGAID 132

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++W +R     V  + G+D AA+ ++A +  + +   V++ DTAGR HN + LM  + 
Sbjct: 133 QLRVWGERLGVRVVAQQPGADPAAVIFDAIQSVERRGGGVVLADTAGRFHNRASLMDELA 192

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+ RV++    HA +  L V+DA+TGQNA RQ E+F    G  GL++ K DG A+GG L+
Sbjct: 193 KVDRVIRTKAVHADYRRLLVIDASTGQNAFRQAEVFQETVGLDGLVLAKYDGAAKGGVLV 252

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           PI    +IP  F+G GEG+ DL PF  +++
Sbjct: 253 PISRRLEIPALFVGTGEGLEDLRPFDVEEY 282


>gi|322418395|ref|YP_004197618.1| signal recognition particle-docking protein FtsY [Geobacter sp.
           M18]
 gi|320124782|gb|ADW12342.1| signal recognition particle-docking protein FtsY [Geobacter sp.
           M18]
          Length = 403

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 123/281 (43%), Positives = 173/281 (61%), Gaps = 14/281 (4%)

Query: 33  TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-----VSVQRVLYD 87
           T ++  +++D    EELE++LI +D+GV     ++   L +R  +D      +++R L  
Sbjct: 124 TLLLGKKQIDTDTLEELEEILITADLGVKTTVDLIR-TLEQRLKRDELQDGAALKRAL-- 180

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             E I   LM    P       +P VILV+GVNGVGKTT IGKL+ + +  G KV+LAA 
Sbjct: 181 -KEEIQLRLMEHHAPLVVT-DKKPFVILVIGVNGVGKTTTIGKLAARYAGEGKKVLLAAA 238

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA +QL++WA R   D V  + G+D +A+ ++A K A A+  DVLIIDTAGR+H 
Sbjct: 239 DTFRAAAAEQLELWAKRVGTDIVRHKEGADPSAVVFDACKAAIARGTDVLIIDTAGRMHT 298

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
              LM  + K+ RVL R  P  PH  L VLDA TGQNAL Q ++F   A  TG+++TK+D
Sbjct: 299 KVNLMEEMKKIRRVLTREIPDGPHETLLVLDAATGQNALSQAKLFKEAASVTGVVLTKLD 358

Query: 268 GTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVAKDF 306
           G+A+GG  I + V+H+  +PV F+GVGE + DL  F    F
Sbjct: 359 GSAKGG--IVVAVSHEFALPVRFIGVGESVEDLRAFDPAQF 397


>gi|322387569|ref|ZP_08061178.1| cell division protein FtsY [Streptococcus infantis ATCC 700779]
 gi|321141436|gb|EFX36932.1| cell division protein FtsY [Streptococcus infantis ATCC 700779]
          Length = 452

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 153/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K      N +F  
Sbjct: 189 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGIYNENINFQD 246

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 247 GLTVMLFVGVNGVGKTTSIGKLANRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 306

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 307 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKENLMAELEKIGRIIKRVVPEA 366

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 367 PHETFLALDASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIREELNIPVKLI 426

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 427 GFGEKIDDIGEFNSENF 443


>gi|317498506|ref|ZP_07956800.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316894199|gb|EFV16387.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 313

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/317 (38%), Positives = 183/317 (57%), Gaps = 13/317 (4%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
           SE   + ++L +G + T   +      I S    +D+   EELE++LI SD+G+     I
Sbjct: 4   SEKKGFFKRLAQGLSKTRDNIASSFDSIFSGFSGIDEDFYEELEEILIMSDMGIDTTMNI 63

Query: 67  VEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +E+L  K     +      +++L D   +  +M +  S    +DF  +  V+LV+GVNGV
Sbjct: 64  IEDLKKKVKENKIKEPEECRQLLID--SIKDQMRLEDSA---YDFIDKKSVVLVIGVNGV 118

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT +GKL+  +   G KV+LAA DTFR+ AI+QLK W++R   D +    G+D AA+ 
Sbjct: 119 GKTTSVGKLAASLKGQGKKVLLAAADTFRAGAIEQLKEWSNRAGVDIISQAEGADPAAVV 178

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A+A+ VDVL+ DTAGRLHN   LM  + K+ R++++    A    L VLD TTG
Sbjct: 179 YDAVAAAKARDVDVLLCDTAGRLHNKKNLMNELSKINRIIQKEYSEAYLETLIVLDGTTG 238

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q + F      +G+I+TK+DGTA+GG  I I     IPV ++G+GE ++DL+ F 
Sbjct: 239 QNAMAQAKQFKEATDISGIILTKLDGTAKGGIAIAIQSELGIPVKYIGIGEQVDDLQRF- 297

Query: 303 AKDFSAVITGCLDYGEE 319
             D    +    + GEE
Sbjct: 298 --DPDMFVNALFEKGEE 312


>gi|291559017|emb|CBL37817.1| signal recognition particle-docking protein FtsY
           [butyrate-producing bacterium SSC/2]
          Length = 311

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/317 (38%), Positives = 183/317 (57%), Gaps = 13/317 (4%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
           SE   + ++L +G + T   +      I S    +D+   EELE++LI SD+G+     I
Sbjct: 2   SEKKGFFKRLAQGLSKTRDNIASSFDSIFSGFSGIDEDFYEELEEILIMSDMGIDTTMNI 61

Query: 67  VEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +E+L  K     +      +++L D   +  +M +  S    +DF  +  V+LV+GVNGV
Sbjct: 62  IEDLKKKVKENKIKEPEECRQLLID--SIKDQMRLEDSA---YDFIDKKSVVLVIGVNGV 116

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT +GKL+  +   G KV+LAA DTFR+ AI+QLK W++R   D +    G+D AA+ 
Sbjct: 117 GKTTSVGKLAASLKGQGKKVLLAAADTFRAGAIEQLKEWSNRAGVDIISQAEGADPAAVV 176

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A+A+ VDVL+ DTAGRLHN   LM  + K+ R++++    A    L VLD TTG
Sbjct: 177 YDAVAAAKARDVDVLLCDTAGRLHNKKNLMNELSKINRIIQKEYSEAYLETLIVLDGTTG 236

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q + F      +G+I+TK+DGTA+GG  I I     IPV ++G+GE ++DL+ F 
Sbjct: 237 QNAMAQAKQFKEATDISGIILTKLDGTAKGGIAIAIQSELGIPVKYIGIGEQVDDLQRF- 295

Query: 303 AKDFSAVITGCLDYGEE 319
             D    +    + GEE
Sbjct: 296 --DPDMFVNALFEKGEE 310


>gi|212550480|ref|YP_002308797.1| signal recognition particle receptor FtsY [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212548718|dbj|BAG83386.1| signal recognition particle receptor FtsY [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 319

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/308 (37%), Positives = 178/308 (57%), Gaps = 12/308 (3%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + L +G   T   L   I   ++ + ++D  + + LE++LI SD+GV    +I+E +  +
Sbjct: 15  KSLAEGLLKTRESLFRKIARSVAGKSKIDRELLDNLEEILIDSDMGVKTTLQIIERIENR 74

Query: 74  ----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKT 125
               RYA    +  +L    E I  ML         DF    S +P+VI+VVGVNGVGKT
Sbjct: 75  TIRGRYANIDELTPILI---EEIVSMLQDNDVEEVEDFVIPDSKKPYVIMVVGVNGVGKT 131

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+        ++ L A DTFR+AA++QL +W++R     V   +G+D A++ ++ 
Sbjct: 132 TTIGKLAYHFKKKDKRIFLGAADTFRAAAVEQLNVWSERVGVPIVKQRMGADPASVVHDT 191

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A A   D++IIDTAGRLHN   LM  + K+  V+K++ P+APH +L VLD++TGQNA
Sbjct: 192 LTSAIANNADIVIIDTAGRLHNKIGLMNELTKIKNVIKKIIPYAPHEILLVLDSSTGQNA 251

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
             Q E F      T L +TK+DGTA+GG ++ I    ++PV ++G+GE + DL+ F  ++
Sbjct: 252 YNQAEKFSKATEITSLAITKLDGTAKGGVVVGISNQLQVPVKYIGIGERLEDLQIFRKRE 311

Query: 306 FSAVITGC 313
           F   + G 
Sbjct: 312 FVNSLFGS 319


>gi|307706700|ref|ZP_07643506.1| signal recognition particle-docking protein FtsY [Streptococcus
           mitis SK321]
 gi|307617944|gb|EFN97105.1| signal recognition particle-docking protein FtsY [Streptococcus
           mitis SK321]
          Length = 421

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N+D    F  
Sbjct: 158 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQD 215

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 216 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 275

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A ++ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 276 VTGPEKADPASVVFDGMERAVSEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 335

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 336 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 395

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 396 GFGEKIDDIGEFNSENF 412


>gi|210612577|ref|ZP_03289368.1| hypothetical protein CLONEX_01570 [Clostridium nexile DSM 1787]
 gi|210151502|gb|EEA82509.1| hypothetical protein CLONEX_01570 [Clostridium nexile DSM 1787]
          Length = 309

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/301 (43%), Positives = 186/301 (61%), Gaps = 6/301 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   + ++L +G   T   +  GI  I +    +DD   EELE++LI  D+GV    +++
Sbjct: 3   EKKGFFKRLVEGLTKTRDNIVSGIDSIFNGFSNIDDDFYEELEEILIMGDLGVHATMEVI 62

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIH--KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           E+L  K+  K+  ++        LI   K  M + +   ++F  R  V+L++GVNGVGKT
Sbjct: 63  EDL--KKKVKENHIKEPADCKQFLIDSIKEQMDVGEA-AYEFEDRTSVVLIIGVNGVGKT 119

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K+     KV+LAA DTFR+AA +QLK WA+R  A+ +  + GSD A++ Y+A
Sbjct: 120 TTIGKLAGKLRAQNKKVVLAAADTFRAAAGEQLKEWANRAEAELIGGQEGSDPASVVYDA 179

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K DVL++DTAGRLHN   LM  + K+ RVL+R  P A    L VLD TTGQNA
Sbjct: 180 VAAAKARKADVLLVDTAGRLHNKKNLMEELRKINRVLEREYPDAYRETLVVLDGTTGQNA 239

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q + F  VA  TG+++TKMDGTA+GG  + I     IPV ++GVGE I+DL+ F + D
Sbjct: 240 LAQAKEFKDVADITGIVLTKMDGTAKGGIAVAIQSELGIPVKYIGVGESIDDLQKFNSDD 299

Query: 306 F 306
           F
Sbjct: 300 F 300


>gi|308189636|ref|YP_003922567.1| cell division protein [Mycoplasma fermentans JER]
 gi|307624378|gb|ADN68683.1| cell division protein [Mycoplasma fermentans JER]
          Length = 355

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 107/276 (38%), Positives = 165/276 (59%), Gaps = 12/276 (4%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           + +++   +ELE++LI SDI   +   I+  +  +  A+ +   +   D+ EL+   +  
Sbjct: 72  KEINEEFFDELEEILIMSDINAKLVYAIITHIKNEVRARGLKDTK---DIGELVADQMFV 128

Query: 99  L-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +           N+    R ++ + VGVNG GKTT I K++ K    G KV++AAGDTFR
Sbjct: 129 VYTNKSIVDTTLNYQ-DGRLNIFIFVGVNGSGKTTSIAKIAYKYIKEGKKVLIAAGDTFR 187

Query: 152 SAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           + A+DQL +WA+R  A  V   + G+D +++ YEA ++AQ +K D+L+IDTAGRL N   
Sbjct: 188 AGAVDQLGVWAERVGAPIVKPVKEGADPSSVVYEALEKAQNEKYDLLLIDTAGRLQNKVN 247

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + KM  ++ R    APH  L VLDATTGQN + Q   F  VA  TG+I+TKMDGT+
Sbjct: 248 LMKELEKMYGIIARFQDKAPHECLLVLDATTGQNGVSQARSFKEVAAPTGIILTKMDGTS 307

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +GG ++ I     + V ++G+GEG++DL+ F   +F
Sbjct: 308 KGGIVLSIKDEFDLNVKYIGLGEGLDDLQEFDLDNF 343


>gi|221633792|ref|YP_002523018.1| signal recognition particle-docking protein FtsY [Thermomicrobium
           roseum DSM 5159]
 gi|221157064|gb|ACM06191.1| signal recognition particle-docking protein FtsY [Thermomicrobium
           roseum DSM 5159]
          Length = 320

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 173/311 (55%), Gaps = 13/311 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L  G   +   +   I  +    ++D  + ++LE LLI++D+GVA  + ++E L  +  
Sbjct: 16  QLESGLKRSRQGIFRQIVQLFERSQIDRELFDDLEALLIQADLGVATTEALLERLQERVR 75

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIG 129
             +V   R   +  E + + ++ L +    +   +      P V LVVGVNG GKTT I 
Sbjct: 76  RGEV---RDPVEAREALREEMVALLEAAMRNRRVKIYQRGVPFVSLVVGVNGTGKTTTIA 132

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++   D G  V+L A DTFR+AAIDQLK W +R     +    G+D  A+ ++  + A
Sbjct: 133 KLARYHLDQGRTVLLVAADTFRAAAIDQLKAWGERLGVPVIAHAPGADPGAVVFDGMQAA 192

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             + +DVL+IDTAGRLH  S LMA + K+ RV++R  P APH VL V+DATTGQN L Q 
Sbjct: 193 HNRGIDVLLIDTAGRLHTKSNLMAELAKIRRVIQRHVPDAPHEVLLVIDATTGQNGLNQA 252

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F   AG T + +TK+DGTA+GG    I     IP+ ++G GE   D   F   D  A 
Sbjct: 253 RVFTEAAGVTDIALTKLDGTAKGGIAFAIARELGIPIAYVGTGEKPTDFAEF---DPEAY 309

Query: 310 ITGCLDYGEEK 320
           +   L +G+E+
Sbjct: 310 VD-ALFFGDEE 319


>gi|314930538|gb|EFS94369.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL067PA1]
          Length = 396

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 182/292 (62%), Gaps = 12/292 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQR 83
           L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S     + 
Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDPAHARE 164

Query: 84  VLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           VL+   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ ++  G  V
Sbjct: 165 VLH--HELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLAAEGKTV 222

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +    + VDV+++DTA
Sbjct: 223 LLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLVDTA 282

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   TG++
Sbjct: 283 GRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVTGIV 340

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           ++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   +TG +
Sbjct: 341 LSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 389


>gi|253701891|ref|YP_003023080.1| signal recognition particle-docking protein FtsY [Geobacter sp.
           M21]
 gi|251776741|gb|ACT19322.1| signal recognition particle-docking protein FtsY [Geobacter sp.
           M21]
          Length = 409

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/292 (41%), Positives = 178/292 (60%), Gaps = 3/292 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S+  +L K  + T   +   + T ++  +++D    EELE++LI +D+GV     ++  L
Sbjct: 108 SFFERLKKSLSKTHESIVGRVDTLLLGKKQIDTDTLEELEEILITADLGVKTTVDLIRTL 167

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +    ++     L   + E I   LM  + P       +P VILV+GVNGVGKTT IG
Sbjct: 168 EQRLKRDELQDGEALKKALKEEIQLRLMAHAAPLVVT-DKKPFVILVIGVNGVGKTTTIG 226

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ + +  G KV+LAA DTFR+AA +QL++W+ R  AD V  + G+D +A+ ++A K A
Sbjct: 227 KLAARYAGEGKKVLLAAADTFRAAAAEQLELWSQRVGADIVRHKEGADPSAVVFDACKAA 286

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+  DVLIIDTAGR+H    LM  + K+ RVL R  P APH  L VLDA TGQNAL Q 
Sbjct: 287 VARGTDVLIIDTAGRMHTKVNLMEEMKKIRRVLTREIPDAPHETLLVLDAATGQNALSQA 346

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           ++F   A  +G+++TK+DG+A+GG ++ +   + +PV F+GVGE + DL  F
Sbjct: 347 KLFKEAAFVSGVVLTKLDGSAKGGVVVAVSNEYALPVRFIGVGESVEDLREF 398


>gi|158336916|ref|YP_001518091.1| signal recognition particle GTPase [Acaryochloris marina MBIC11017]
 gi|158307157|gb|ABW28774.1| signal recognition particle GTPase [Acaryochloris marina MBIC11017]
          Length = 501

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 187/308 (60%), Gaps = 5/308 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++V+ E +SW++KL +G   T   L   +  ++    L+      +E LL+++D+G++  
Sbjct: 187 EEVSVEEISWLQKLRQGLGKTRRGLANQLKSVVGQGPLNADAVMAIESLLLQADVGISAT 246

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119
            K++E L TK   + +     +  + E++  +L  P  K ++ +F+ +    ++ L+ GV
Sbjct: 247 DKLIEALQTKVREETLPPDAAIAYLKEIMQDILDAPTQKNYSPNFAPKREGMNIWLMTGV 306

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGKL+    ++G   ++AA DTFR+AA++Q+K+W  R++ D + +    +D 
Sbjct: 307 NGAGKTTTIGKLAHISKESGYDCLIAAADTFRAAAVEQVKVWGQRSNVDVIANPGQNTDP 366

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQ + +D+L++DTAGRL N   LM  + K+ R++ +  P A    L VLD
Sbjct: 367 AAVVFDAITAAQKRNIDLLLVDTAGRLQNKKNLMDELNKVRRIVSKKAPDAHIESLLVLD 426

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN LRQ ++F   A  TG+++TK+DG+A+GG  + +V    +P+ F+G GEGI DL
Sbjct: 427 ATLGQNGLRQAQVFSEAAELTGVVLTKLDGSAKGGVALAVVQELGLPIRFIGAGEGITDL 486

Query: 299 EPFVAKDF 306
            PF + +F
Sbjct: 487 RPFSSYEF 494


>gi|114777656|ref|ZP_01452616.1| cell division protein FtsY [Mariprofundus ferrooxydans PV-1]
 gi|114551872|gb|EAU54406.1| cell division protein FtsY [Mariprofundus ferrooxydans PV-1]
          Length = 275

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 107/285 (37%), Positives = 171/285 (60%), Gaps = 16/285 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREE---LEDLLIRSDIGVAVAQKIVE 68
           S+  +L KG   +    +EG+  +I  R +D    ++   +ED LI +D G  ++  +V+
Sbjct: 3   SFFSRLKKGLTRS----REGLAQLIPGRDVDVLSADDWMDIEDGLIMADCGAELSTALVK 58

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +  +R     +++  + +        ++P + P     +  P V+LVVGVNG GKTT I
Sbjct: 59  SVRKRRGGSVAALKSAMLE--------MLPDAPPVT-QATDGPFVLLVVGVNGTGKTTTI 109

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G  V++ AGDTFR+AA++QL +W +R  AD V    G+D AA+A++  ++
Sbjct: 110 GKLATMFRAEGKSVLVGAGDTFRAAAVEQLAVWVERAGADMVRQSEGADPAAVAFDTIQR 169

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
             A+  DV+I+DTAGR+  +  LM  + K+ RV+ +  P APH V QV+D  TGQNA+ Q
Sbjct: 170 GLARAYDVVIVDTAGRVQTDRGLMDELAKVRRVITKAYPAAPHEVWQVVDGGTGQNAVVQ 229

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           VE F  VAGTTGLI+TK+DG+ +GG ++ +     +P+ ++GVG+
Sbjct: 230 VEKFREVAGTTGLIVTKLDGSGKGGIVLQLTEKFGLPIRYVGVGK 274


>gi|149007093|ref|ZP_01830762.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP18-BS74]
 gi|307127166|ref|YP_003879197.1| cell division protein FtsY [Streptococcus pneumoniae 670-6B]
 gi|147761397|gb|EDK68363.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP18-BS74]
 gi|306484228|gb|ADM91097.1| cell division protein FtsY [Streptococcus pneumoniae 670-6B]
 gi|332074577|gb|EGI85051.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae GA17545]
          Length = 429

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 223

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 404 GFGEKIDDIGEFNSENF 420


>gi|313813546|gb|EFS51260.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL025PA1]
 gi|327334312|gb|EGE76026.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL097PA1]
          Length = 396

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 181/292 (61%), Gaps = 12/292 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQR 83
           L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S     + 
Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDPAHARE 164

Query: 84  VLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           VL+   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G  V
Sbjct: 165 VLH--HELVELVGSDMDRSINLDRLEGKPAVVLIVGVNGTGKTTTCGKLARVLVAEGKTV 222

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +    + VDV+++DTA
Sbjct: 223 LLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDEGVDVVLVDTA 282

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   TG++
Sbjct: 283 GRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQARVFSEVVDVTGIV 340

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           ++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   +TG +
Sbjct: 341 LSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 389


>gi|197303073|ref|ZP_03168121.1| hypothetical protein RUMLAC_01800 [Ruminococcus lactaris ATCC
           29176]
 gi|197297928|gb|EDY32480.1| hypothetical protein RUMLAC_01800 [Ruminococcus lactaris ATCC
           29176]
          Length = 319

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 128/303 (42%), Positives = 182/303 (60%), Gaps = 4/303 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  E   + R+L  G   T   +  G+  I     R+DD   EELE+ LI  D+GV    
Sbjct: 1   MGEEKKGFFRRLVSGLTKTRDNIVSGMDSIFHGFSRIDDDFYEELEETLIMGDLGVRATM 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVG 123
            I+E+L  K   K+  ++  L     LI  +   +      ++F +R  V+ V+GVNGVG
Sbjct: 61  DIIEDL--KEKVKEQHIKEPLECRQLLIDSIREQMDVGETAYEFENRTSVVFVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K+ D   KV+LAA DTFR+AA +QL+ WA+R   + +  + G+D A++ Y
Sbjct: 119 KTTTIGKLAGKLKDQNKKVILAAADTFRAAAGEQLREWANRAGVEMIGGQEGADPASVVY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K DVL+ DTAGRLHN   LM  + K+ RV+ R  P A    L VLDATTGQ
Sbjct: 179 DAVAAAKARKADVLLCDTAGRLHNKKNLMEELKKINRVIDREYPDAFRETLVVLDATTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F+ V   TG+++TKMDGTA+GG  + I     IPV ++GVGE I+DL+ F +
Sbjct: 239 NALAQAKEFNEVTDITGIVLTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIDDLQKFDS 298

Query: 304 KDF 306
           ++F
Sbjct: 299 EEF 301


>gi|256384103|gb|ACU78673.1| peptidase, M41 family [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384935|gb|ACU79504.1| peptidase, M41 family [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455878|gb|ADH22113.1| peptidase, M41 family [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 409

 Score =  192 bits (488), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 104/271 (38%), Positives = 171/271 (63%), Gaps = 9/271 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           ++ DD   EELED+LI++D+G+ +  K V  L+ K+  +D S + +   + E +++    
Sbjct: 119 KQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 177

Query: 99  ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
               +K +  DF  +R ++ ++VGVNG GKTT + K++   ++ G KV++AA DTFR+ A
Sbjct: 178 NDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 237

Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             QL+ W         D V  +++ +D A++ ++A K+A+ +  D+L+IDTAGRL N + 
Sbjct: 238 TQQLEEWIKTRLNNKVDLVKTNKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTN 297

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LMA + KM +++++++  APH VL V+DATTGQN + Q E F  VA  +G+I+TKMD T+
Sbjct: 298 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 357

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +GG  + I     IP+  +GVGE ++DL  F
Sbjct: 358 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 388


>gi|229527114|ref|ZP_04416508.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           12129(1)]
 gi|229335345|gb|EEO00828.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           12129(1)]
          Length = 344

 Score =  192 bits (488), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 103/251 (41%), Positives = 160/251 (63%), Gaps = 1/251 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 93  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 152

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +     LY +  E + ++L  + KP   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 153 AKASRQQLRDGEALYGLLKEEMAEILSQVEKPLVIDTEKKPYVILMVGVNGVGKTTTIGK 212

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+
Sbjct: 213 LAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAK 272

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q +
Sbjct: 273 ARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAK 332

Query: 251 MFHAVAGTTGL 261
           +F  VA  TG+
Sbjct: 333 LFSDVAPITGI 343


>gi|224130192|ref|XP_002320775.1| predicted protein [Populus trichocarpa]
 gi|222861548|gb|EEE99090.1| predicted protein [Populus trichocarpa]
          Length = 365

 Score =  192 bits (488), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 107/274 (39%), Positives = 170/274 (62%), Gaps = 9/274 (3%)

Query: 43  DGVREELEDLLIRSDIG----VAVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLM 97
           D V +ELE+ L+ SD G    + + +K+ E++L  +      ++  L   V +L+ K   
Sbjct: 93  DRVLDELEEALLVSDFGPRITIQIVEKLREDILAGKLKSGSEIKDALKKSVLDLLQKKGN 152

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                  +    +P V+++VGVNG GKTT +GKL+ ++ + G K+++AAGDTFR+AA DQ
Sbjct: 153 KTELQLGF---RKPAVVMIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQ 209

Query: 158 LKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           L+IWA+RT  + V ++   + A+++  +A K+ + ++ DV++ DT+GRLH N  LM  + 
Sbjct: 210 LEIWAERTGCEIVVADREKAKASSVLSQAVKKGKEQEFDVVLCDTSGRLHTNYSLMEELI 269

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
              + + ++   AP+ +L VLD TTG N L Q   F+ V G TG I+TK+DG+ARGG ++
Sbjct: 270 ACKKAVGKIVRGAPNEILLVLDGTTGLNMLPQAREFNEVVGITGFILTKLDGSARGGCVV 329

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            +V    IPV F+GVGEG+ DL+PF A+ F   I
Sbjct: 330 SVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAI 363


>gi|94984837|ref|YP_604201.1| signal recognition particle-docking protein FtsY [Deinococcus
           geothermalis DSM 11300]
 gi|94555118|gb|ABF45032.1| signal recognition particle-docking protein FtsY [Deinococcus
           geothermalis DSM 11300]
          Length = 317

 Score =  192 bits (488), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 126/313 (40%), Positives = 177/313 (56%), Gaps = 25/313 (7%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-----RRLDDGVREELEDLLIRSDIGVAVAQK 65
           +SW+ +L  G + T  +L E   D+ +       RLD    E+LE  LI +D+G A  ++
Sbjct: 1   MSWLARLRDGLSKTRKQLNEAAGDLGTDVREALTRLD--TVEDLEYALIAADVGRAATEE 58

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-------FNWD-----FSHRPHV 113
           I+E++   + +   ++Q  L D   L    L P ++        F  D        R HV
Sbjct: 59  ILEDV---KASDRRNLQDALMDALTL---QLEPDARRAQFRKLGFTPDARRTVVDPRGHV 112

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +++VGVNGVGKTT I KL +     G  VM AAGDTFR+AA  QL +W +R     V   
Sbjct: 113 VMIVGVNGVGKTTTIAKLGQYYMGRGKTVMFAAGDTFRAAAGAQLGVWGERLGVPVVQGP 172

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G D AA+A++A     A+  D+L +DTAGRLH    LM  + K+ RV+ + DP  P  V
Sbjct: 173 EGGDPAAVAFDAATARAARGTDLLFVDTAGRLHTKHNLMEELKKVRRVIDKADPGEPAEV 232

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             VLDA TGQN L Q + FH     TG+I+TK+DGTA+GG LIPIV    +P+ F+GVGE
Sbjct: 233 WLVLDAVTGQNGLAQAKKFHEATPLTGVIVTKLDGTAKGGILIPIVRELGVPIKFIGVGE 292

Query: 294 GINDLEPFVAKDF 306
             +DL+PF +++F
Sbjct: 293 QPDDLQPFDSREF 305


>gi|169824542|ref|YP_001692153.1| signal recognition particle protein [Finegoldia magna ATCC 29328]
 gi|167831347|dbj|BAG08263.1| signal recognition particle protein [Finegoldia magna ATCC 29328]
          Length = 378

 Score =  192 bits (488), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 179/305 (58%), Gaps = 13/305 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  KL      T   +   I  ++++ R +D+ + EE+E+ LI +DIGV    KIV +L 
Sbjct: 78  FFEKLKNSLLKTRDNISNKIDQVLANYRTVDEELFEEIEETLISADIGVDTTLKIVGQLR 137

Query: 72  TK---RYAKDVS-VQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            +   R  +D S ++ VL D+    +I++    +    N D      +ILVVGVNGVGKT
Sbjct: 138 DQVKLRNIQDPSKIKSVLADILKENIINE---KIDNNLNVD---EKTIILVVGVNGVGKT 191

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K    G KV++ A DTFR+AAI+QL  W++R   D +  + G+D A++ ++ 
Sbjct: 192 TTIGKLAMKYKKDGKKVLMVAADTFRAAAIEQLTEWSNRAKVDIISHKEGADPASVVFDG 251

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
               +++  D+LI DTAGRLHN   LM  + K+ RV+++  P A   +L ++D TTGQNA
Sbjct: 252 VNAMKSRNTDILICDTAGRLHNKKNLMNELNKIKRVIEKEYPEAKKEILLIVDGTTGQNA 311

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F      TG I+TK+DGTA+GG + P+ +   IPV F+G+GE +NDL  F  + 
Sbjct: 312 IIQAKEFMNATDLTGAIITKLDGTAKGGMIFPLEMELGIPVKFIGIGEQVNDLVKFEPEK 371

Query: 306 FSAVI 310
           F   I
Sbjct: 372 FIEAI 376


>gi|257452334|ref|ZP_05617633.1| Signal recognition particle receptor FtsY [Fusobacterium sp.
           3_1_5R]
          Length = 334

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 156/257 (60%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           I+SDIG+ + QKIV +L      + V     +Y V + + +  +  S+        +  V
Sbjct: 76  IQSDIGLEMTQKIVTDLEKAVKKQGVQNPEEVYPVLKTVMEEYLIESEEEFPREEEQLQV 135

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL+VGVNGVGKTT IGK++ K+   G KV+L AGDTFR+AA++QL+ WA R+ A+ V  +
Sbjct: 136 ILIVGVNGVGKTTTIGKIAAKLKKEGKKVVLGAGDTFRAAAVEQLEEWAKRSEAEIVKGK 195

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G+D  ++ ++   +A+    DV IIDTAGRLHN + LM  + K+  V+++      +  
Sbjct: 196 EGADPGSVVFDTLTKAEELGADVAIIDTAGRLHNKAYLMKELEKINNVVRKKIGERHYES 255

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+D TTGQNAL Q   F+ V   TG I+TK+DGTA+GG +  +    K P+ F+GVGE
Sbjct: 256 LLVIDGTTGQNALNQAREFNEVTHLTGFIITKLDGTAKGGIVFSLSELLKKPIRFIGVGE 315

Query: 294 GINDLEPFVAKDFSAVI 310
            I DL  F  KDF A +
Sbjct: 316 KIEDLRKFSKKDFIAAL 332


>gi|317058877|ref|ZP_07923362.1| cell division protein ftsY [Fusobacterium sp. 3_1_5R]
 gi|313684553|gb|EFS21388.1| cell division protein ftsY [Fusobacterium sp. 3_1_5R]
          Length = 337

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 156/257 (60%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           I+SDIG+ + QKIV +L      + V     +Y V + + +  +  S+        +  V
Sbjct: 79  IQSDIGLEMTQKIVTDLEKAVKKQGVQNPEEVYPVLKTVMEEYLIESEEEFPREEEQLQV 138

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL+VGVNGVGKTT IGK++ K+   G KV+L AGDTFR+AA++QL+ WA R+ A+ V  +
Sbjct: 139 ILIVGVNGVGKTTTIGKIAAKLKKEGKKVVLGAGDTFRAAAVEQLEEWAKRSEAEIVKGK 198

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G+D  ++ ++   +A+    DV IIDTAGRLHN + LM  + K+  V+++      +  
Sbjct: 199 EGADPGSVVFDTLTKAEELGADVAIIDTAGRLHNKAYLMKELEKINNVVRKKIGERHYES 258

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+D TTGQNAL Q   F+ V   TG I+TK+DGTA+GG +  +    K P+ F+GVGE
Sbjct: 259 LLVIDGTTGQNALNQAREFNEVTHLTGFIITKLDGTAKGGIVFSLSELLKKPIRFIGVGE 318

Query: 294 GINDLEPFVAKDFSAVI 310
            I DL  F  KDF A +
Sbjct: 319 KIEDLRKFSKKDFIAAL 335


>gi|163814046|ref|ZP_02205438.1| hypothetical protein COPEUT_00199 [Coprococcus eutactus ATCC 27759]
 gi|158450495|gb|EDP27490.1| hypothetical protein COPEUT_00199 [Coprococcus eutactus ATCC 27759]
          Length = 335

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 126/312 (40%), Positives = 184/312 (58%), Gaps = 11/312 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +G A T   + E   D+  +  +DD   E LE+  I +D+G    +K++E+L  
Sbjct: 20  FFARLKEGLAKTRNNIVESFADVFGASHIDDDFYENLEETFIMADMGYETTEKVIEDL-- 77

Query: 73  KRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           K+  +D  ++       EL+  ++   M + +   +DF ++  V+LV+GVNGVGKTT IG
Sbjct: 78  KQRVEDSHIKEPAA-CKELVINIIRDQMSVDES-AYDFENKKTVVLVIGVNGVGKTTTIG 135

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G +V++AA DTFR+AAIDQLK WADR   D +    G+D AA+ Y+A   A
Sbjct: 136 KLAAQYRQRGKRVLMAAADTFRAAAIDQLKTWADRAQVDIISHNEGADPAAVVYDAVAAA 195

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D+L++DTAGRLHN   LM  + KM R++ R  P A    L VLD TTGQNAL Q 
Sbjct: 196 KARNTDILLVDTAGRLHNKKNLMDELAKMRRIITRDYPEANVEALIVLDGTTGQNALEQA 255

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F  V    G+++TK+DGTA+GG  I I     +PV F+GVGE I DL+ F   D  A 
Sbjct: 256 RQFSNVTELDGIVITKLDGTAKGGIAIAIQSELDVPVKFIGVGEKIGDLQRF---DPQAY 312

Query: 310 ITGCL-DYGEEK 320
           +     D+ E++
Sbjct: 313 VNALFADFDEDR 324


>gi|229829001|ref|ZP_04455070.1| hypothetical protein GCWU000342_01086 [Shuttleworthia satelles DSM
           14600]
 gi|229792164|gb|EEP28278.1| hypothetical protein GCWU000342_01086 [Shuttleworthia satelles DSM
           14600]
          Length = 474

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 116/269 (43%), Positives = 167/269 (62%), Gaps = 4/269 (1%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           R+D+   EELE++LI  D+GV  + +++E L  ++  KD  ++        LI  +   +
Sbjct: 31  RIDEDFYEELEEVLISGDLGVQTSMRLIENL--RQEVKDQHIKEAGDCRQLLIDDIRRQM 88

Query: 100 SKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQ 157
               N +DF     V+++VGVNGVGKTT +GKL+ K      K V++AA DTFR+AA +Q
Sbjct: 89  DVGENAYDFEQETSVLMMVGVNGVGKTTTVGKLAAKFKQEKKKRVLIAAADTFRAAANEQ 148

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LK WADR   D +  + GSD AA+ ++A + A+A+  D+L++DTAGRLHN + LM  + K
Sbjct: 149 LKEWADRAGVDMIGGQEGSDPAAVVFDAVQSAKARNCDILLVDTAGRLHNKTNLMHELEK 208

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RV+ R         L VLDAT+GQNAL Q   F AVA  TG+++TKMDG+A+GG  + 
Sbjct: 209 INRVIDREYEGVHRETLAVLDATSGQNALVQAREFAAVANVTGIVLTKMDGSAKGGIAVA 268

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           I     IPV ++GVGE + DLE F A  +
Sbjct: 269 IQSELGIPVKYIGVGETVEDLERFDADQY 297


>gi|312135008|ref|YP_004002346.1| signal recognition particle-docking protein ftsy
           [Caldicellulosiruptor owensensis OL]
 gi|311775059|gb|ADQ04546.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor owensensis OL]
          Length = 301

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 190/301 (63%), Gaps = 12/301 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     E +  ++ S +++DD + EELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFFDRLKEGLSKTKKNFTEKVESLLKSFKQVDDELFEELEEILVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           L  +   + +S    ++++L +    I  +   LS+ +       P +IL+VGVNGVGKT
Sbjct: 61  LKERVKKEKISDSQAIKKILKEEMLNIIDLENKLSEKY-------PLIILMVGVNGVGKT 113

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGK++  +   G KV++AA DTFR+AA +QL+IWA R   D +    G+D AA+ ++ 
Sbjct: 114 TSIGKIANLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGADPAAVVFDG 173

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            +  +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQNA
Sbjct: 174 IQAMRARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEASKETLLVIDATTGQNA 233

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q + F+     +G+++TK+DGTA+GG +I I    KIPV F+GVGE I+DL+ F AK+
Sbjct: 234 LNQAKEFNQAVNISGIVLTKLDGTAKGGIVISICDELKIPVKFVGVGEKIDDLQYFNAKE 293

Query: 306 F 306
           F
Sbjct: 294 F 294


>gi|302380338|ref|ZP_07268808.1| signal recognition particle-docking protein FtsY [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233693|ref|ZP_07320347.1| signal recognition particle-docking protein FtsY [Finegoldia magna
           BVS033A4]
 gi|302311828|gb|EFK93839.1| signal recognition particle-docking protein FtsY [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495127|gb|EFL54879.1| signal recognition particle-docking protein FtsY [Finegoldia magna
           BVS033A4]
          Length = 378

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 178/305 (58%), Gaps = 13/305 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  KL      T   +   I  ++++ R +D+ + EE+E+ LI +DIGV    KIV +L 
Sbjct: 78  FFEKLKNSLLKTRDNISNKIDQVLANYRTVDEELFEEIEETLISADIGVDTTLKIVGQLR 137

Query: 72  TK---RYAKDVS-VQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            +   R  +D S ++ VL D+    +I+     +    N D      +ILVVGVNGVGKT
Sbjct: 138 DQVKLRNIQDPSKIKNVLADILKENIIND---KIDNNLNVD---EKTIILVVGVNGVGKT 191

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K    G KV++ A DTFR+AAI+QL  W++R   D +  + G+D A++ ++ 
Sbjct: 192 TTIGKLAMKYKKDGKKVLMVAADTFRAAAIEQLTEWSNRAKVDIISHKEGADPASVVFDG 251

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
               +++  D+LI DTAGRLHN   LM  + K+ RV+++  P A   +L ++D TTGQNA
Sbjct: 252 VNAMKSRNTDILICDTAGRLHNKKNLMNELNKIKRVIEKEYPEAKKEILLIVDGTTGQNA 311

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F      TG I+TK+DGTA+GG + P+ +   IPV F+G+GE +NDL  F  + 
Sbjct: 312 IIQAKEFMNATDLTGAIITKLDGTAKGGMIFPLEMELGIPVKFIGIGEQVNDLVKFEPEK 371

Query: 306 FSAVI 310
           F   I
Sbjct: 372 FIEAI 376


>gi|166363209|ref|YP_001655482.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166085582|dbj|BAG00290.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 451

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 112/315 (35%), Positives = 190/315 (60%), Gaps = 6/315 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + V+ E ++W++KL +G   T   L   +  ++    L+    EE+E LL+++D+GV   
Sbjct: 136 EDVSEEEITWLKKLRQGLGKTRRSLVNQLKAVVGQGPLNQDAVEEIEALLLQADVGVDAT 195

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119
             I+  L  K   + +  ++ +  + E+I ++L  PL+   N  F       ++ ++ GV
Sbjct: 196 DYIITTLQNKLKQEALPPEKAIEYLKEIIREILDAPLANYSNPGFEPEKGKLNIWMLTGV 255

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NGVGKTT IGKL+     +G   M+AA DTFR+AA++Q+K+W +R+  + + +    +D 
Sbjct: 256 NGVGKTTTIGKLAHLSKQSGYSCMIAAADTFRAAAVEQVKVWGERSQVEVIANPGKNTDP 315

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+  + A+++++++L++DTAGRL N   LMA + K+ R++ +    A    L VLD
Sbjct: 316 AAVVYDGIEAAKSREIELLLVDTAGRLQNKKNLMAELSKIRRIIDKKAESAVVESLLVLD 375

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN LRQ E+F   A  +G+I+TK+DGTA+GG  + +     +P+ F+G GEGI DL
Sbjct: 376 ATLGQNGLRQAEVFSEAAQLSGVILTKIDGTAKGGVALAVARQLNLPIRFVGAGEGIEDL 435

Query: 299 EPFVAKDF-SAVITG 312
            PF + +F  A+++G
Sbjct: 436 RPFSSYEFVEALLSG 450


>gi|331703488|ref|YP_004400175.1| cell division protein FtsY [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802043|emb|CBW54197.1| Cell division protein FtsY [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 412

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 104/271 (38%), Positives = 171/271 (63%), Gaps = 9/271 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           ++ DD   EELED+LI++D+G+ +  K V  L+ K+  +D S + +   + E +++    
Sbjct: 122 KQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 180

Query: 99  ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
               +K +  DF  +R ++ ++VGVNG GKTT + K++   ++ G KV++AA DTFR+ A
Sbjct: 181 NDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 240

Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             QL+ W         D V  +++ +D A++ ++A K+A+ +  D+L+IDTAGRL N + 
Sbjct: 241 TQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTN 300

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LMA + KM +++++++  APH VL V+DATTGQN + Q E F  VA  +G+I+TKMD T+
Sbjct: 301 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 360

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +GG  + I     IP+  +GVGE ++DL  F
Sbjct: 361 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 391


>gi|312143706|ref|YP_003995152.1| signal recognition particle-docking protein FtsY [Halanaerobium sp.
           'sapolanicus']
 gi|311904357|gb|ADQ14798.1| signal recognition particle-docking protein FtsY [Halanaerobium sp.
           'sapolanicus']
          Length = 307

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 187/301 (62%), Gaps = 8/301 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S++ +L  G   T       +++I + R  +DD + EELE++LI++D+GV     ++E+
Sbjct: 1   MSFLERLKDGLKKTKEGFVNKVSNIFTGRTNIDDELFEELEEVLIQADVGVKTTFALIEK 60

Query: 70  LLTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           L      +D+     L  Y  +EL   ML      FN+D     ++I+VVGVNG GKTT 
Sbjct: 61  LKEDIKEEDIKEPEELMKYFQAEL-KAMLQNEEGTFNFD--KDLNIIMVVGVNGAGKTTT 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I K++ +  D G KVMLAAGDTFR+ AI+QL+IW DR   + +  + GSDAAA+AY+A +
Sbjct: 118 IAKVAGRYKDQGKKVMLAAGDTFRAGAIEQLQIWGDRLGVNVIAQKEGSDAAAVAYDAVQ 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNA 245
            A+A+ VD+LI+DTAGRLH    LM  + K+ RV+ R     +A   VL VLDATTGQNA
Sbjct: 178 SAKARDVDLLIVDTAGRLHTQKNLMEELKKVKRVIDREAESANAQVEVLLVLDATTGQNA 237

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q ++F+      G+ +TK+DGTA+GG +I +    +IP+  +GVGE   DL+ F  ++
Sbjct: 238 ISQAKLFNEAVDVDGIALTKLDGTAKGGIVIAVKNELQIPIKLIGVGEAAEDLQNFDPEE 297

Query: 306 F 306
           F
Sbjct: 298 F 298


>gi|315081322|gb|EFT53298.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL078PA1]
          Length = 396

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 181/292 (61%), Gaps = 12/292 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQR 83
           L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S     + 
Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDPAHARE 164

Query: 84  VLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           VL+   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G  V
Sbjct: 165 VLH--HELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKTV 222

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +    + VDV+++DTA
Sbjct: 223 LLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLVDTA 282

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   TG++
Sbjct: 283 GRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVTGIV 340

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           ++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   +TG +
Sbjct: 341 LSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 389


>gi|168575699|ref|ZP_02721614.1| cell division protein FtsY [Streptococcus pneumoniae MLV-016]
 gi|307067892|ref|YP_003876858.1| hypothetical protein SPAP_1268 [Streptococcus pneumoniae AP200]
 gi|183578203|gb|EDT98731.1| cell division protein FtsY [Streptococcus pneumoniae MLV-016]
 gi|306409429|gb|ADM84856.1| hypothetical protein SPAP_1268 [Streptococcus pneumoniae AP200]
          Length = 425

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 153/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+     AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHCYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 400 GFGEKIDDIGEFNSENF 416


>gi|307718927|ref|YP_003874459.1| signal recognition particle-docking protein FtsY [Spirochaeta
           thermophila DSM 6192]
 gi|306532652|gb|ADN02186.1| signal recognition particle-docking protein FtsY [Spirochaeta
           thermophila DSM 6192]
          Length = 289

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 160/270 (59%), Gaps = 6/270 (2%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           R D+   EE EDLLI +D+G   A ++VEE+  +R AK   V  V   V E+I  +L   
Sbjct: 16  RFDEAFWEEFEDLLIEADLGAETAFEVVEEV--QRRAKKEGVVDV-EGVREVIKDVLRRY 72

Query: 100 SKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLK--VMLAAGDTFRSAAID 156
            +  ++       V+ L VGVNGVGKTT I K +  +     +  V+LAAGDTFR+ AID
Sbjct: 73  VRAGDFSLPDSGTVVFLFVGVNGVGKTTTIAKFAHFIRSTWGRDDVVLAAGDTFRAGAID 132

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++W +R     V  + G+D AA+ ++A +  + +   V++ DTAGR HN + LM  + 
Sbjct: 133 QLRVWGERLGVRVVAQQPGADPAAVIFDAIQSVERRGGGVVLADTAGRFHNRASLMDELA 192

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+ RV++     A +  L V+DA+TGQNA RQ E+F    G  GL++ K DG A+GG L+
Sbjct: 193 KVDRVIRSKAADADYRRLLVVDASTGQNAFRQAEVFQETVGLDGLVLAKYDGAAKGGVLV 252

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           PI    +IP  F+G GEG+ DL PF  +++
Sbjct: 253 PISRRLEIPAVFVGTGEGLEDLRPFDVEEY 282


>gi|269115234|ref|YP_003302997.1| Cell division FtsY-like protein [Mycoplasma hominis]
 gi|3334189|sp|O32861|FTSY_MYCHP RecName: Full=Cell division protein ftsY homolog
 gi|2292927|emb|CAA72412.1| FtsY protein [Mycoplasma hominis ATCC 23114]
 gi|268322859|emb|CAX37594.1| Cell division protein ftsY homolog [Mycoplasma hominis ATCC 23114]
          Length = 351

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 114/266 (42%), Positives = 162/266 (60%), Gaps = 9/266 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           +LI SDI + + Q I+ E   +   ++++    +  ++ D    I+     +    N   
Sbjct: 83  MLIMSDISIKLVQIIINECKKEVRNENITDPKLINEIIADKLFTIYTSNSVVDTTLNIK- 141

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            +R +VILVVGVNG GKTT I K++KK+ D G KV++AAGDTFR+AA++QL+IWA R  A
Sbjct: 142 DNRLNVILVVGVNGSGKTTSISKIAKKLIDEGKKVLIAAGDTFRAAAVEQLEIWAKRVGA 201

Query: 168 DFVC-SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           D V  +E   D AA+ Y A   A++KK D+LI+DTAGRL N   LM  + K+ RVL    
Sbjct: 202 DIVTPNENEVDPAAVVYRAIDIAKSKKYDILIVDTAGRLQNKVNLMNELAKINRVLASKI 261

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH  L VLDATTGQN + Q  +F      TG+I+TKMDGT++GG ++ I     + V
Sbjct: 262 PDAPHESLLVLDATTGQNGVIQARVFKESTPLTGIILTKMDGTSKGGIVLTIKDEIGLFV 321

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITG 312
            ++G+GE ++DL  F   D  + I G
Sbjct: 322 KYIGLGEKVDDLAEF---DLDSYIYG 344


>gi|86607811|ref|YP_476573.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556353|gb|ABD01310.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 498

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 183/304 (60%), Gaps = 2/304 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++++ E +SW++KL +G   T L L   +  ++    LD    EE+E LL+++D+G+   
Sbjct: 188 EEISVEEISWLQKLRRGLGKTRLNLINQLKALVGRGPLDQKAVEEIEALLLQADVGIDAT 247

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           ++I++ L  +   + V  +  +  + + + +ML  +  P         ++ L+VGVNG G
Sbjct: 248 EQIIQALQKRMREEVVPPEEAVKYLKQQMRQMLT-VGNPTFAPQRDTLNIWLIVGVNGAG 306

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALA 182
           KTT IGK++     +G + ++AA DTFR+AA++QLK+WA+R   + + +    +D AA+ 
Sbjct: 307 KTTTIGKIAHVARKSGYRCLIAAADTFRAAAVEQLKVWAERAGVEVIANPSPNADPAAVV 366

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A   A+A+  ++L++DTAGRL N   LM  + K+ R++ +  P A    L VLDAT G
Sbjct: 367 FDAITAAKARGTELLLVDTAGRLQNKKNLMDELAKIRRIVDKKAPEAKVESLLVLDATQG 426

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN LRQ E+F   A  +G+I+TK+D TA+GG  + I     +P+ F+G GEG+ DL PF 
Sbjct: 427 QNGLRQAEVFAEAAKLSGVILTKLDSTAKGGIALAITQQMNLPIRFIGAGEGLEDLRPFS 486

Query: 303 AKDF 306
           + +F
Sbjct: 487 SYEF 490


>gi|313836653|gb|EFS74367.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL037PA2]
 gi|314928161|gb|EFS91992.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL044PA1]
 gi|314972159|gb|EFT16256.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL037PA3]
 gi|328907977|gb|EGG27737.1| signal recognition particle-docking protein FtsY [Propionibacterium
           sp. P08]
          Length = 396

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 117/293 (39%), Positives = 179/293 (61%), Gaps = 14/293 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L +      VS       
Sbjct: 105 LARGLAELLSADKLDDDTWDDFETTLITSDLGVGPTTELVEKLRSGLAIDGVSDP---VH 161

Query: 88  VSELIHKMLMPLSKP-----FNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
             E++H+ L+ L  P      + D    +P V+LVVGVNG GKTT  GKL++ +   G  
Sbjct: 162 AREVLHRELVGLVGPDMDRSISLDHQEGKPAVVLVVGVNGTGKTTTCGKLARVLVAEGKT 221

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+L A DTFR+AA +QL+ W +R     +  + G+D A++AYEA +    + VDV+++DT
Sbjct: 222 VLLGAADTFRAAAGEQLETWGERVGVRTIRKDEGADPASVAYEAVQAGVDEGVDVVLVDT 281

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   TG+
Sbjct: 282 AGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARIFSEVVDVTGI 339

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           +++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A DF   +TG +
Sbjct: 340 VLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADDF---VTGLM 389


>gi|325518808|gb|EGC98389.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           TJI49]
          Length = 213

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 136/203 (66%), Gaps = 1/203 (0%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P V+++ GVNG GKTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   
Sbjct: 12  QPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLTVWGERNNVTV 71

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V  E G D AA+ ++A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    A
Sbjct: 72  VQQESG-DPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGA 130

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V+DA TGQN L QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+
Sbjct: 131 PHEVLLVIDANTGQNGLTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFI 190

Query: 290 GVGEGINDLEPFVAKDFSAVITG 312
           GVGE + DL+PF A++F+  + G
Sbjct: 191 GVGEKVEDLQPFSAEEFADALLG 213


>gi|83319748|ref|YP_424455.1| signal recognition particle-docking protein FtsY [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|83283634|gb|ABC01566.1| signal recognition particle-docking protein FtsY [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 424

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 105/271 (38%), Positives = 170/271 (62%), Gaps = 9/271 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           ++ DD   EELED+LI++D+G+ +  K V  L+ K+  +D S + +   + E +++    
Sbjct: 134 KQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 192

Query: 99  ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
               +K +  DF  +R +V ++VGVNG GKTT + K++   ++ G KV++AA DTFR+ A
Sbjct: 193 NDWTNKKYRIDFKENRLNVFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 252

Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             QL+ W         D V  +++ +D A++ ++A K+A+ +  D+L+IDTAGRL N   
Sbjct: 253 TQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKVN 312

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LMA + KM +++++++  APH VL V+DATTGQN + Q E F  VA  +G+I+TKMD T+
Sbjct: 313 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 372

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +GG  + I     IP+  +GVGE ++DL  F
Sbjct: 373 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 403


>gi|327389479|gb|EGE87824.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae GA04375]
          Length = 401

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 138 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 195

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     
Sbjct: 196 NLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRTGAVAQLAEWGRRVDVPV 255

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 256 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 315

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 316 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 375

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 376 GFGEKIDDIGEFNSENF 392


>gi|148998676|ref|ZP_01826115.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP11-BS70]
 gi|147755513|gb|EDK62561.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP11-BS70]
          Length = 425

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 153/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 162 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 219

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+     AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 220 NLTVMLFVGVNGVGKTTSIGKLAHCYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 279

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 280 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 339

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 340 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 399

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 400 GFGEKIDDIGEFNSENF 416


>gi|225453710|ref|XP_002269433.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089055|emb|CBI38758.3| unnamed protein product [Vitis vinifera]
          Length = 367

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 123/317 (38%), Positives = 185/317 (58%), Gaps = 20/317 (6%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVA 63
           +  ++ S + KL  GF+ T   L   I +++    L D  R  +ELE+ L+ SD G  + 
Sbjct: 57  IKEKTKSDVEKLFSGFSKTRDNLAV-IDELLLYWNLADTDRVLDELEEALLVSDFGPRIT 115

Query: 64  QKIVEELLTKRYA---------KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
            KIVE L     A         KD   + VL  +++   K  + L          +P V+
Sbjct: 116 IKIVESLRDDILAGKLKSGSEIKDALKKSVLDLLTKKGSKTALQLG-------FRKPAVV 168

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE- 173
           ++VGVNG GKTT +GKL+ K+   G KV++AAGDTFR+AA DQL+IWA+RT  + V +E 
Sbjct: 169 IIVGVNGGGKTTSLGKLAYKLKKEGAKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 228

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             + A+++  +A K+ + +  D+++ DT+GRLH N  LM  +    + + ++   AP+ +
Sbjct: 229 EKAKASSVLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELIACKKAVGKVVSGAPNEI 288

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLD TTG N L Q   F+ V G +GLI+TK+DG+ARGG ++ +V    IPV F+GVGE
Sbjct: 289 LLVLDGTTGLNMLPQAREFNEVVGISGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGE 348

Query: 294 GINDLEPFVAKDFSAVI 310
           G+ DL+PF A+ F   I
Sbjct: 349 GVEDLQPFDAEVFVNAI 365


>gi|319776794|ref|YP_004136445.1| cell division protein ftsy [Mycoplasma fermentans M64]
 gi|318037869|gb|ADV34068.1| Cell division protein FtsY [Mycoplasma fermentans M64]
          Length = 355

 Score =  191 bits (486), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 107/276 (38%), Positives = 164/276 (59%), Gaps = 12/276 (4%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           + +++   +ELE++LI SDI   +   I+  +  +  A+ +   +   D+ EL+   +  
Sbjct: 72  KEINEEFFDELEEILIMSDINAKLVYAIITHIKNEVRARGLKDTK---DIGELVADQMFV 128

Query: 99  L-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +           N+    R ++ + VGVNG GKTT I K++ K    G KV++AAGDTFR
Sbjct: 129 VYTNKSIVDTTLNYQ-DGRLNIFIFVGVNGSGKTTSIAKIAYKYIKEGKKVLIAAGDTFR 187

Query: 152 SAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           + A+DQL +WA+R  A  V   + G D +++ YEA ++AQ +K D+L+IDTAGRL N   
Sbjct: 188 AGAVDQLGVWAERVGAPIVKPVKEGVDPSSVVYEALEKAQNEKYDLLLIDTAGRLQNKVN 247

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + KM  ++ R    APH  L VLDATTGQN + Q   F  VA  TG+I+TKMDGT+
Sbjct: 248 LMKELEKMYGIIARFQDKAPHECLLVLDATTGQNGVSQARSFKEVAAPTGIILTKMDGTS 307

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +GG ++ I     + V ++G+GEG++DL+ F   +F
Sbjct: 308 KGGIVLSIKDEFDLNVKYIGLGEGLDDLQEFDLDNF 343


>gi|289423971|ref|ZP_06425763.1| signal recognition particle-docking protein FtsY
           [Peptostreptococcus anaerobius 653-L]
 gi|289155607|gb|EFD04280.1| signal recognition particle-docking protein FtsY
           [Peptostreptococcus anaerobius 653-L]
          Length = 364

 Score =  191 bits (486), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 129/301 (42%), Positives = 190/301 (63%), Gaps = 8/301 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---L 71
           +L +G + T   +   + DI++S  ++D+ + EELE++LI +D+G+     I+++L   +
Sbjct: 68  RLMEGLSKTKSNIMGRVDDILNSYTKIDEDLLEELEEVLITADVGLTTTMDIIDQLRVMI 127

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            KR   D    R L  + E+I  +L   +     D S  P VI++VGVNGVGKTT IGKL
Sbjct: 128 KKRGVTDPLEVRDL--LKEIISNILTEGNPKIEIDPS--PAVIVMVGVNGVGKTTTIGKL 183

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K    G KVMLAA DTFR+AA +QL IWA R   D +    G+D  A+ ++A K +Q+
Sbjct: 184 AQKYKKDGKKVMLAAADTFRAAATEQLDIWATRVGVDIIKHHEGADPGAVIFDAIKASQS 243

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +KVD+LI DTAGRLHN + LM  +GK+ +++ R  P A   VL V+DATTGQNA+ Q + 
Sbjct: 244 RKVDLLICDTAGRLHNKANLMNELGKIFKIIDREYPEAKKEVLLVVDATTGQNAVSQAKT 303

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VA  TG+++TK+DGTA+GG ++ +     +PV  +GVGE   DL+ F A+ F+  I 
Sbjct: 304 FKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGEKAEDLQVFDAQSFTDAIF 363

Query: 312 G 312
           G
Sbjct: 364 G 364


>gi|50842926|ref|YP_056153.1| signal recognition particle receptor [Propionibacterium acnes
           KPA171202]
 gi|289426529|ref|ZP_06428272.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes SK187]
 gi|289427788|ref|ZP_06429499.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes J165]
 gi|295130983|ref|YP_003581646.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes SK137]
 gi|50840528|gb|AAT83195.1| signal recognition particle receptor [Propionibacterium acnes
           KPA171202]
 gi|289153257|gb|EFD01975.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes SK187]
 gi|289159052|gb|EFD07245.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes J165]
 gi|291375171|gb|ADD99025.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes SK137]
 gi|313763655|gb|EFS35019.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL013PA1]
 gi|313773593|gb|EFS39559.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL074PA1]
 gi|313794049|gb|EFS42073.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL110PA1]
 gi|313801436|gb|EFS42687.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL110PA2]
 gi|313807884|gb|EFS46365.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL087PA2]
 gi|313811645|gb|EFS49359.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL083PA1]
 gi|313816832|gb|EFS54546.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL059PA1]
 gi|313822225|gb|EFS59939.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL036PA1]
 gi|313823542|gb|EFS61256.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL036PA2]
 gi|313825869|gb|EFS63583.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL063PA1]
 gi|313829549|gb|EFS67263.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL063PA2]
 gi|313831386|gb|EFS69100.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL007PA1]
 gi|313834998|gb|EFS72712.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL056PA1]
 gi|313839844|gb|EFS77558.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL086PA1]
 gi|314914657|gb|EFS78488.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL005PA4]
 gi|314919230|gb|EFS83061.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL050PA1]
 gi|314920860|gb|EFS84691.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL050PA3]
 gi|314924619|gb|EFS88450.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL036PA3]
 gi|314954302|gb|EFS98708.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL027PA1]
 gi|314957419|gb|EFT01522.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL002PA1]
 gi|314963597|gb|EFT07697.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL082PA1]
 gi|314968571|gb|EFT12669.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL037PA1]
 gi|314974261|gb|EFT18357.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL053PA1]
 gi|314976734|gb|EFT20829.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL045PA1]
 gi|314978888|gb|EFT22982.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL072PA2]
 gi|314984436|gb|EFT28528.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL005PA1]
 gi|315079451|gb|EFT51444.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL053PA2]
 gi|315083523|gb|EFT55499.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL027PA2]
 gi|315089377|gb|EFT61353.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL072PA1]
 gi|315095401|gb|EFT67377.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL038PA1]
 gi|315099282|gb|EFT71258.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL059PA2]
 gi|315100484|gb|EFT72460.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL046PA1]
 gi|315106738|gb|EFT78714.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL030PA1]
 gi|315109081|gb|EFT81057.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL030PA2]
 gi|327328338|gb|EGE70100.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL096PA2]
 gi|327329797|gb|EGE71553.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL096PA3]
 gi|327444122|gb|EGE90776.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL043PA2]
 gi|327444999|gb|EGE91653.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL043PA1]
 gi|327446482|gb|EGE93136.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL013PA2]
 gi|327451932|gb|EGE98586.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL092PA1]
 gi|327455033|gb|EGF01688.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL087PA3]
 gi|327457679|gb|EGF04334.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL083PA2]
 gi|328752238|gb|EGF65854.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL020PA1]
 gi|328755135|gb|EGF68751.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL087PA1]
 gi|328758087|gb|EGF71703.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL025PA2]
 gi|328760089|gb|EGF73668.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL099PA1]
 gi|332675863|gb|AEE72679.1| cell division protein FtsY [Propionibacterium acnes 266]
          Length = 396

 Score =  191 bits (486), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 181/292 (61%), Gaps = 12/292 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQR 83
           L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S     + 
Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDPAHARE 164

Query: 84  VLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           VL+   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G  V
Sbjct: 165 VLH--HELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKTV 222

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +    + VDV+++DTA
Sbjct: 223 LLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLVDTA 282

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   TG++
Sbjct: 283 GRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVTGIV 340

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           ++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   +TG +
Sbjct: 341 LSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 389


>gi|322376799|ref|ZP_08051292.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           M334]
 gi|321282606|gb|EFX59613.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           M334]
          Length = 420

 Score =  191 bits (486), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 153/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N+D    F  
Sbjct: 157 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDESIHFQD 214

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 215 GLTVMLFVGVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 274

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+   A
Sbjct: 275 VTGAEKADPASVVFDGMERAVAESIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVSEA 334

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 335 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 394

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 395 GFGEKIDDIGEFNSENF 411


>gi|257784653|ref|YP_003179870.1| signal recognition particle-docking protein FtsY [Atopobium
           parvulum DSM 20469]
 gi|257473160|gb|ACV51279.1| signal recognition particle-docking protein FtsY [Atopobium
           parvulum DSM 20469]
          Length = 301

 Score =  191 bits (486), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 96/266 (36%), Positives = 162/266 (60%), Gaps = 2/266 (0%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           ++LED L+  D+G  VA ++ ++L  +   ++++    L     L+ ++           
Sbjct: 34  DDLEDTLVMGDMGAEVAMRVTDDLRERAARENLTRSDQLR--RALVERLTAEFPVAKRDP 91

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           F+  P ++L VG+NG GKTT +GK++ +   +G+K ++   DTFR+AAI+QL++W +R+ 
Sbjct: 92  FTDTPSIVLFVGINGAGKTTTVGKIAGRAHASGVKTLIGGADTFRAAAIEQLQVWGERSG 151

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V  E G+D A++ +E  + A  +  ++++IDTAGRLH +S LM  + K++ V ++  
Sbjct: 152 IEVVTRERGADPASVCFEVVETAAKQGTELVLIDTAGRLHTSSDLMRELAKVVSVTRKRA 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P SV+ V+DATTGQN L Q + F+      GLI+TK+DGTA+GG  + I     +P+
Sbjct: 212 GDIPVSVVLVIDATTGQNGLNQAKEFNDALSLDGLIVTKLDGTAKGGIALAISNQLNLPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITG 312
           Y +GVGE I+DL+ F A+ F   + G
Sbjct: 272 YRIGVGESIDDLQTFDARSFCEALVG 297


>gi|257465874|ref|ZP_05630185.1| Signal recognition particle receptor FtsY [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 334

 Score =  191 bits (486), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 107/257 (41%), Positives = 157/257 (61%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           I+SDIG+ + +KIV +L      ++V     +Y V + + +  +  S+       +   V
Sbjct: 76  IQSDIGLEMTEKIVTDLEKAVKKQEVQNPEEVYPVLKTVMEEYLIESEEEFPKEENELQV 135

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL+VGVNGVGKTT IGK++ K+   G KV+L AGDTFR+AA++QL+ WA R+ A+ V  +
Sbjct: 136 ILIVGVNGVGKTTTIGKIAAKLKKEGKKVVLGAGDTFRAAAVEQLEEWAKRSEAEIVKGK 195

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G+D  ++ ++   +A+    DV IIDTAGRLHN + LM  + K+  V+++      +  
Sbjct: 196 EGADPGSVVFDTLTKAEELGADVAIIDTAGRLHNKAYLMKELEKINNVVRKKIGERHYES 255

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+D TTGQNAL Q   F+ V   TG I+TK+DGTA+GG +  +    K P+ F+GVGE
Sbjct: 256 LLVIDGTTGQNALNQAREFNEVTHLTGFIITKLDGTAKGGIVFSLSELLKKPIRFIGVGE 315

Query: 294 GINDLEPFVAKDFSAVI 310
            I DL  F  KDF A +
Sbjct: 316 KIEDLRKFSKKDFIAAL 332


>gi|225860923|ref|YP_002742432.1| cell division protein FtsY [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229962|ref|ZP_06963643.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254347|ref|ZP_06977933.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502759|ref|YP_003724699.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae TCH8431/19A]
 gi|225726484|gb|ACO22335.1| cell division protein FtsY [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238354|gb|ADI69485.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 429

 Score =  191 bits (486), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 223

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     
Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRTGAVAQLAEWGRRVDVPV 283

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 404 GFGEKIDDIGEFNSENF 420


>gi|315917031|ref|ZP_07913271.1| cell division protein ftsY [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313690906|gb|EFS27741.1| cell division protein ftsY [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 337

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/257 (41%), Positives = 157/257 (61%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           I+SDIG+ + +KIV +L      ++V     +Y V + + +  +  S+       +   V
Sbjct: 79  IQSDIGLEMTEKIVTDLEKAVKKQEVQNPEEVYPVLKTVMEEYLIESEEEFPKEENELQV 138

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL+VGVNGVGKTT IGK++ K+   G KV+L AGDTFR+AA++QL+ WA R+ A+ V  +
Sbjct: 139 ILIVGVNGVGKTTTIGKIAAKLKKEGKKVVLGAGDTFRAAAVEQLEEWAKRSEAEIVKGK 198

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G+D  ++ ++   +A+    DV IIDTAGRLHN + LM  + K+  V+++      +  
Sbjct: 199 EGADPGSVVFDTLTKAEELGADVAIIDTAGRLHNKAYLMKELEKINNVVRKKIGERHYES 258

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+D TTGQNAL Q   F+ V   TG I+TK+DGTA+GG +  +    K P+ F+GVGE
Sbjct: 259 LLVIDGTTGQNALNQAREFNEVTHLTGFIITKLDGTAKGGIVFSLSELLKKPIRFIGVGE 318

Query: 294 GINDLEPFVAKDFSAVI 310
            I DL  F  KDF A +
Sbjct: 319 KIEDLRKFSKKDFIAAL 335


>gi|166031775|ref|ZP_02234604.1| hypothetical protein DORFOR_01476 [Dorea formicigenerans ATCC
           27755]
 gi|166028228|gb|EDR46985.1| hypothetical protein DORFOR_01476 [Dorea formicigenerans ATCC
           27755]
          Length = 361

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/309 (42%), Positives = 189/309 (61%), Gaps = 10/309 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           ++ +A E   + R+L  G   T   +  G+  I +    +D+   EELE++LI  D+GV 
Sbjct: 44  SKSMAEEKKGFFRRLVDGLTKTRDNIVSGMDSIFNGFTHIDEDFYEELEEVLIMGDLGVQ 103

Query: 62  ----VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
               +  K+ E++ T+   + V  +++L D      K  M + +   ++F  R  V++V+
Sbjct: 104 ATYDILDKLREKVKTQHIKEPVECRQILIDSI----KEQMDVGEA-AYEFEERTSVVMVI 158

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K+     KV+LAA DTFR+AA +QLK WA+R  A+ +  + GSD
Sbjct: 159 GVNGVGKTTTIGKLAGKLRSQNKKVVLAAADTFRAAAGEQLKEWANRAQAELIGGQEGSD 218

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A   A+A+  DVL+IDTAGRLHN   LM  + KM +++ R  P A    L VL
Sbjct: 219 PAAVVYDAVAAAKARHADVLLIDTAGRLHNKKNLMEELRKMNKIIDREFPDAYRETLVVL 278

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQNAL Q + F+ VA  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I+D
Sbjct: 279 DATTGQNALAQAKEFNEVADITGVILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIDD 338

Query: 298 LEPFVAKDF 306
           L+ F +  F
Sbjct: 339 LQKFNSDTF 347


>gi|170017641|ref|YP_001728560.1| Signal recognition particle-docking protein FtsY [Leuconostoc
           citreum KM20]
 gi|169804498|gb|ACA83116.1| Signal recognition particle-docking protein FtsY [Leuconostoc
           citreum KM20]
          Length = 400

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/261 (42%), Positives = 156/261 (59%), Gaps = 10/261 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L+ +D+G  +A KI +EL   R    +   +   DV ++I K ++ L +    D     H
Sbjct: 133 LVGADVGFDMAIKISDEL---REEVKLENAKRKEDVRDVIIKKMVDLYEADGVDEDATMH 189

Query: 113 -------VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
                  VIL VGVNGVGKTT IGKL+ K    G  V+LAA DTFR+ A  QL+ W +R 
Sbjct: 190 FNANGTTVILFVGVNGVGKTTTIGKLATKYRQQGKSVLLAAADTFRAGATKQLQEWGERA 249

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               V  +  +D A++ +EA  +A+ +  D+L +DTAGRL NN  LM  + KM R+++R 
Sbjct: 250 GVPVVAGKEKADPASVVFEAVAKARDEHYDILFVDTAGRLQNNVNLMQELEKMKRIIQRE 309

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P APH VL VLDATTGQNAL+Q ++F   +  TG+++TKMDGTA+GG +  I     +P
Sbjct: 310 IPDAPHEVLLVLDATTGQNALQQAKLFKDSSDVTGIVLTKMDGTAKGGIVFAIRSEMHLP 369

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           V ++G GE  +DL  F  ++F
Sbjct: 370 VKWIGFGEKASDLRVFKPEEF 390


>gi|256851298|ref|ZP_05556687.1| signal recognition particle-docking protein FtsY [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660722|ref|ZP_05861637.1| signal recognition particle-docking protein FtsY [Lactobacillus
           jensenii 115-3-CHN]
 gi|282933257|ref|ZP_06338644.1| FtsY-like protein [Lactobacillus jensenii 208-1]
 gi|297206167|ref|ZP_06923562.1| cell division protein FtsY [Lactobacillus jensenii JV-V16]
 gi|256616360|gb|EEU21548.1| signal recognition particle-docking protein FtsY [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548444|gb|EEX24419.1| signal recognition particle-docking protein FtsY [Lactobacillus
           jensenii 115-3-CHN]
 gi|281302761|gb|EFA94976.1| FtsY-like protein [Lactobacillus jensenii 208-1]
 gi|297149293|gb|EFH29591.1| cell division protein FtsY [Lactobacillus jensenii JV-V16]
          Length = 434

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/276 (38%), Positives = 166/276 (60%), Gaps = 10/276 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R +D+   +ELEDLLI SD+G   ++++VE+L  K  AK +   +   ++ +LI + L+ 
Sbjct: 154 RSVDEDFFDELEDLLIESDVGFETSEELVEQL--KDEAK-LQNAKSHDELKKLIVQKLVD 210

Query: 99  L------SKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +      S+     ++  + +V L VGVNG GKTT IGKL+++  + G KV+L A DTFR
Sbjct: 211 IYDQNGDSEAEKLTYNDGKTNVYLFVGVNGAGKTTTIGKLAQRFKNQGKKVVLVAADTFR 270

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           + A++QLK W  RT  + V   + +D A++ Y+  K    +K D +++DTAGRL N   L
Sbjct: 271 AGAVEQLKEWGRRTETEVVTGPVQADPASVVYDGVKHGLEEKADYVLVDTAGRLQNKQNL 330

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + K+ R +K+L P  P   L VLD +TGQNAL Q + F      TGL++TK+DG+++
Sbjct: 331 MKELEKIERTIKKLLPEEPSETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSK 390

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           GG ++ I    K+PV  +G+GE   DL  F A  ++
Sbjct: 391 GGVILAIRNEMKLPVKLVGLGEKAEDLADFDAASYA 426


>gi|148985139|ref|ZP_01818378.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922584|gb|EDK73702.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP3-BS71]
 gi|301800164|emb|CBW32769.1| putative signal recognition particle 54 FtsY [Streptococcus
           pneumoniae OXC141]
          Length = 429

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 223

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     
Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 404 GFGEKIDDIGEFNSENF 420


>gi|317057722|ref|YP_004106189.1| signal recognition particle-docking protein FtsY [Ruminococcus
           albus 7]
 gi|315449991|gb|ADU23555.1| signal recognition particle-docking protein FtsY [Ruminococcus
           albus 7]
          Length = 301

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/251 (44%), Positives = 162/251 (64%), Gaps = 2/251 (0%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           SDIGV  + KI +++      K ++    + D+ + +   ++   +P   D S  P VIL
Sbjct: 47  SDIGVNTSVKICDKVRDYVKQKGITDPTQIKDILKDVIAEMLGEEQPL--DMSTVPSVIL 104

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           V+GVNGVGKTT IGKL+ ++ + G  V++AA DTFR+AAIDQL++W DR   + +  + G
Sbjct: 105 VIGVNGVGKTTTIGKLANQLKNQGKHVIVAAADTFRAAAIDQLEVWTDRAGVELIKHKEG 164

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ ++A   A+A+  DV+I DTAGRLHN   LM  + K+ R++ +        VL 
Sbjct: 165 SDPAAVVFDALTAAKARNADVVICDTAGRLHNKKNLMKELEKISRIVHQQAEGCALEVLL 224

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            LDATTGQNA+ Q + F+  A  TG+I+TK+DGTA+GG +I I    KIPV  + VGE I
Sbjct: 225 ALDATTGQNAVNQAQQFNEAADITGIILTKLDGTAKGGIVITICDDLKIPVKLVTVGEKI 284

Query: 296 NDLEPFVAKDF 306
           +D++PF+AKDF
Sbjct: 285 DDIQPFIAKDF 295


>gi|149194174|ref|ZP_01871272.1| Cell division transporter substrate-binding protein FtsY
           [Caminibacter mediatlanticus TB-2]
 gi|149136127|gb|EDM24605.1| Cell division transporter substrate-binding protein FtsY
           [Caminibacter mediatlanticus TB-2]
          Length = 290

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/287 (35%), Positives = 169/287 (58%), Gaps = 13/287 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           F     K KE +  ++ + + +   +E +E+ L+ +D+   + +KIV +L     +KD  
Sbjct: 5   FKKALNKTKEALQTVVGTEKKEKLSKEIIEEALLEADMDYDLVEKIVSKL-PDEVSKD-- 61

Query: 81  VQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
                    +L  ++L     P N  + + +P+V L++GVNG GKTT I KL+ K    G
Sbjct: 62  ---------KLRKEILWYFDTPNNKIEINDKPYVFLIIGVNGAGKTTTIAKLAHKFKKEG 112

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AAI+QL  WA+  +   + ++ G D AA+ Y+    A+AK +D+ +I
Sbjct: 113 KSVILGAADTFRAAAIEQLSKWAEIVNVPIIKTKHGHDPAAVTYDTIASAKAKGIDIALI 172

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLHN   L   + K++ V K+   +APH V+ ++D T G +A+ Q ++F  + G  
Sbjct: 173 DTAGRLHNKINLQNELKKIVNVAKKAYENAPHKVILIIDGTQGSSAINQAKVFKEIIGAD 232

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G+I+TK+DGTA+GG +  I    ++P+Y++GVGE ++DL  F  ++F
Sbjct: 233 GVIITKLDGTAKGGSVFTIANELRLPIYYIGVGEKLDDLVEFNKEEF 279


>gi|168493165|ref|ZP_02717308.1| cell division protein FtsY [Streptococcus pneumoniae CDC3059-06]
 gi|183576736|gb|EDT97264.1| cell division protein FtsY [Streptococcus pneumoniae CDC3059-06]
          Length = 429

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 223

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     
Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 284 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 404 GFGEKIDDIGEFNSENF 420


>gi|251781993|ref|YP_002996295.1| putative cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390622|dbj|BAH81081.1| putative cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 516

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/260 (41%), Positives = 158/260 (60%), Gaps = 8/260 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFS 108
           +LI SD+GV VA  + EEL   RY   +   +    +  +I + L+ + +    +N   +
Sbjct: 251 MLILSDVGVHVATTLTEEL---RYEAKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAIN 307

Query: 109 HRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           ++    V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R  
Sbjct: 308 YQDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVD 367

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D A++ ++  ++A A+  D+L+IDTAGRL N   LMA + KM R++KR+ 
Sbjct: 368 VPVITGPEKADPASVVFDGVEKAVAEGADILLIDTAGRLQNKENLMAELEKMGRIIKRVI 427

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV
Sbjct: 428 PDAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPV 487

Query: 287 YFLGVGEGINDLEPFVAKDF 306
            F+G GE ++D+  F ++DF
Sbjct: 488 KFIGFGEKMDDIGEFHSEDF 507


>gi|313819669|gb|EFS57383.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL046PA2]
 gi|314962017|gb|EFT06118.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL002PA2]
 gi|315087203|gb|EFT59179.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL002PA3]
          Length = 396

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 181/292 (61%), Gaps = 12/292 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQR 83
           L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S     + 
Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDPAHARE 164

Query: 84  VLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           VL+   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G  V
Sbjct: 165 VLH--HELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLIAEGKTV 222

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +    + VDV+++DTA
Sbjct: 223 LLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLVDTA 282

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   TG++
Sbjct: 283 GRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVTGIV 340

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           ++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   +TG +
Sbjct: 341 LSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 389


>gi|332203092|gb|EGJ17160.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae GA47901]
          Length = 406

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 143 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 200

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     
Sbjct: 201 NLTVMLFVGVNGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 260

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LM  + K+ R++KR+ P A
Sbjct: 261 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMTELEKIGRIIKRVVPEA 320

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 321 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 380

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 381 GFGEKIDDIGEFNSENF 397


>gi|313124068|ref|YP_004034327.1| signal recognition particle-docking protein ftsy [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280631|gb|ADQ61350.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|325685923|gb|EGD27988.1| cell division protein FtsY [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 423

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/274 (37%), Positives = 165/274 (60%), Gaps = 5/274 (1%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIH 93
           R +D+   ++LE+LLI SD+G   ++++ ++L     L K  ++D   + ++  + E+  
Sbjct: 142 RTVDEDFFDDLEELLIESDVGYETSEELTDQLREEAKLQKAKSRDDLKRVIVQKLVEVYD 201

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           +     ++   +D + +P+V L VGVNG GKTT +GKL+K+  D G KV+L A DTFR+ 
Sbjct: 202 ENANSENEKLAYDPNAKPNVYLFVGVNGAGKTTTVGKLAKRFHDQGKKVLLVAADTFRAG 261

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++QL  W  RT    V     +D AA+ Y+  ++A A++ D L++DTAGRL N   LM 
Sbjct: 262 AVEQLVEWGKRTGVPVVTGPDKADPAAVVYDGLERAIAEEADYLLVDTAGRLQNKVNLMN 321

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ R +K+  P  P   L VLD +TGQNAL Q + F      +GL++TK+DG+++GG
Sbjct: 322 ELEKIQRTIKKRLPDQPAETLLVLDGSTGQNALLQAKDFDKTTKLSGLVLTKLDGSSKGG 381

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            ++ I    K+PV  +G+GE   DL  F A +++
Sbjct: 382 VVLSIRHEMKLPVKLVGLGEKAEDLADFDAANYA 415


>gi|148993853|ref|ZP_01823255.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP9-BS68]
 gi|168489071|ref|ZP_02713270.1| cell division protein FtsY [Streptococcus pneumoniae SP195]
 gi|147927678|gb|EDK78703.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP9-BS68]
 gi|183572532|gb|EDT93060.1| cell division protein FtsY [Streptococcus pneumoniae SP195]
          Length = 406

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 143 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 200

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     
Sbjct: 201 NLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 260

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 261 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 320

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 321 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 380

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 381 GFGEKIDDIGEFNSENF 397


>gi|302338435|ref|YP_003803641.1| signal recognition particle-docking protein FtsY [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635620|gb|ADK81047.1| signal recognition particle-docking protein FtsY [Spirochaeta
           smaragdinae DSM 11293]
          Length = 291

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/268 (39%), Positives = 160/268 (59%), Gaps = 6/268 (2%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           LD+   +ELED LI SD+G   A  +V+ L   + A+ +    +L    + + + L+P +
Sbjct: 20  LDEAFYDELEDTLIESDLGARTAMDLVDSLRDSKEARGMGESEIL----DYLKRQLLPYT 75

Query: 101 KPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQL 158
           K    DF  +   +ILV+GVNGVGKTT I K+++   DA G   +LAAGDTFR+AAIDQL
Sbjct: 76  KAAKLDFRDKKRALILVLGVNGVGKTTTIAKMARYFHDAQGKSCVLAAGDTFRAAAIDQL 135

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
            +  +R     V  + G+D  A+ Y+A + A ++  ++++ DTAGR+HN + L+  + K+
Sbjct: 136 LVHGERLGVRVVHQQPGADPGAVIYDALESAVSRGEELVLADTAGRMHNKANLIRELQKI 195

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            +++        +  L V+D TTGQNALRQ E+FH   G   L+M K D  A+GG +IPI
Sbjct: 196 HKIVGAKIGTENYCKLLVIDTTTGQNALRQAELFHEAVGVDALVMAKYDSAAKGGIIIPI 255

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             T  IPV F+G GEG  DL  F ++ +
Sbjct: 256 QRTLSIPVAFVGTGEGYGDLALFDSESY 283


>gi|332073582|gb|EGI84061.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae GA17570]
          Length = 378

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 115 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 172

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     
Sbjct: 173 NLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 232

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 233 VTGPEKADPASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 292

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 293 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 352

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 353 GFGEKIDDIGEFNSENF 369


>gi|328794005|ref|XP_003251960.1| PREDICTED: putative methylthiotransferase RP416-like, partial [Apis
           mellifera]
          Length = 447

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/199 (44%), Positives = 135/199 (67%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           +G + ++ KL   +T + + RRLDD   E+LED+LI +D G  VA+ ++E     R+  +
Sbjct: 243 RGLSRSTQKLGNNLTSVFTKRRLDDESLEQLEDILISADFGPEVAENVIESFRKTRFGSE 302

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           V+ Q +   ++E I K+L P++ PF  +   +PHV+L+VGVNG GKTT IGK+ +  +D 
Sbjct: 303 VTDQEIKQALAEEISKILKPVAVPFQPNPDLKPHVVLMVGVNGTGKTTTIGKMGQFFTDQ 362

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           GLKVM+ AGDTFR+AA++QL++W DR     +  +  +DAA LA+EA K+A+ ++ D+L+
Sbjct: 363 GLKVMMVAGDTFRAAAVEQLQVWGDRVGVSVISGKPQADAAGLAFEALKRAKNEQTDLLL 422

Query: 199 IDTAGRLHNNSILMAGIGK 217
           IDTAGRLHN S LM  + K
Sbjct: 423 IDTAGRLHNKSALMEELAK 441


>gi|255037358|ref|YP_003087979.1| signal recognition particle-docking protein FtsY [Dyadobacter
           fermentans DSM 18053]
 gi|254950114|gb|ACT94814.1| signal recognition particle-docking protein FtsY [Dyadobacter
           fermentans DSM 18053]
          Length = 320

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/278 (42%), Positives = 171/278 (61%), Gaps = 6/278 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVA----VAQKIVEELLTKRYAKDVSVQRVLYD--V 88
           I+    +D+ V +ELED+L+ SD+GV     V ++I E +   +YA    +  +L +   
Sbjct: 34  IVGKTTIDEDVLDELEDILVSSDVGVETTVKVIKRIEERVARDKYASTAELDSILREEIA 93

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + L     + +   F  +   +P V++VVGVNGVGKTT IGKL+ +    G KV+L A D
Sbjct: 94  ALLTENKSVDIRDSFETEHLPKPFVMMVVGVNGVGKTTTIGKLAHQFHQRGHKVVLGAAD 153

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+AA+DQLK+W  R +   +   + +D +A+AY+A K+      DV+IIDTAGRLH  
Sbjct: 154 TFRAAAVDQLKLWGQRVNVPVIDHGMNTDPSAVAYDAIKKGVESNADVIIIDTAGRLHTK 213

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  + K+ RV++++ P APH VL VLD +TGQNA+ Q   F  V   T L +TK+DG
Sbjct: 214 VNLMNELSKIKRVMQKILPDAPHEVLLVLDGSTGQNAVIQAREFTKVTDITALAITKLDG 273

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TA+GG +I I    KIPV ++GVGE ++DL+ F   +F
Sbjct: 274 TAKGGVVIGISDEFKIPVKYIGVGEKMDDLQVFDRAEF 311


>gi|104774251|ref|YP_619231.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116514341|ref|YP_813247.1| Signal recognition particle GTPase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|103423332|emb|CAI98179.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116093656|gb|ABJ58809.1| signal recognition particle-docking protein FtsY [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325126039|gb|ADY85369.1| Cell division protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 442

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/274 (37%), Positives = 165/274 (60%), Gaps = 5/274 (1%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIH 93
           R +D+   ++LE+LLI SD+G   ++++ ++L     L K  ++D   + ++  + E+  
Sbjct: 161 RTVDEDFFDDLEELLIESDVGYETSEELTDQLREEAKLQKAKSRDDLKRVIVQKLVEVYD 220

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           +     ++   +D + +P+V L VGVNG GKTT +GKL+K+  D G KV+L A DTFR+ 
Sbjct: 221 ENANSENEKLAYDPNAKPNVYLFVGVNGAGKTTTVGKLAKRFHDQGKKVLLVAADTFRAG 280

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++QL  W  RT    V     +D AA+ Y+  ++A A++ D L++DTAGRL N   LM 
Sbjct: 281 AVEQLVEWGKRTGVPVVTGPDKADPAAVVYDGLERAIAEEADYLLVDTAGRLQNKVNLMN 340

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ R +K+  P  P   L VLD +TGQNAL Q + F      +GL++TK+DG+++GG
Sbjct: 341 ELEKIQRTIKKRLPDQPAETLLVLDGSTGQNALLQAKDFDKTTKLSGLVLTKLDGSSKGG 400

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            ++ I    K+PV  +G+GE   DL  F A +++
Sbjct: 401 VVLSIRHEMKLPVKLVGLGEKAEDLADFDAANYA 434


>gi|315038612|ref|YP_004032180.1| signal recognition particle GTPase [Lactobacillus amylovorus GRL
           1112]
 gi|312276745|gb|ADQ59385.1| signal recognition particle GTPase [Lactobacillus amylovorus GRL
           1112]
          Length = 439

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/259 (39%), Positives = 154/259 (59%), Gaps = 5/259 (1%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           I SD+G   A+++ +EL     L    ++D   Q ++  + +L  +      +   +D  
Sbjct: 173 IESDVGFETAEQLTDELREEAKLQNAKSRDDLKQVIVEKLVDLYDQGGQGKDEKLAYDPD 232

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P+V L VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL+ W  R    
Sbjct: 233 AKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLEEWGKRVGVP 292

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V  +  +D A++ Y+A +QA  +K D L++DTAGRL N   LMA + K+ R +K+L P 
Sbjct: 293 VVTGKEKADPASVVYDATEQAIKEKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPE 352

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I    K+PV  
Sbjct: 353 QPAETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMKLPVKL 412

Query: 289 LGVGEGINDLEPFVAKDFS 307
           +G+GE   DL  F A +++
Sbjct: 413 VGLGEKAEDLADFDAANYA 431


>gi|88191946|pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
           Group P21212
 gi|88191947|pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
           Group H32
 gi|88191948|pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
           Group H32
          Length = 320

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/271 (38%), Positives = 171/271 (63%), Gaps = 9/271 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           ++ DD   EELED+LI++D+G+ +  K V  L+ K+  +D S + +   + E +++    
Sbjct: 30  KQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 88

Query: 99  ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
               +K +  DF  +R ++ ++VGVNG GKTT + K++   ++ G KV++AA DTFR+ A
Sbjct: 89  NDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 148

Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             QL+ W         D V  +++ +D A++ ++A K+A+ +  D+L+IDTAGRL N + 
Sbjct: 149 TQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTN 208

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LMA + KM +++++++  APH VL V+DATTGQN + Q E F  VA  +G+I+TKMD T+
Sbjct: 209 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 268

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +GG  + I     IP+  +GVGE ++DL  F
Sbjct: 269 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 299


>gi|322411356|gb|EFY02264.1| putative signal recognition particle-docking protein FtsY
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 516

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/259 (42%), Positives = 157/259 (60%), Gaps = 6/259 (2%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSH 109
           +LI SD+GV VA  + EEL  +   ++      L  V  ++ K++    K   +N   ++
Sbjct: 251 MLILSDVGVHVATTLTEELRYEAKLENAKKPDALKRV--IVEKLVDIYEKDGQYNEAINY 308

Query: 110 RP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +    V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R   
Sbjct: 309 QDGLTVMLFVGVNGVGKTTSIGKLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDV 368

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +     +D A++ ++  ++A A+  D+L+IDTAGRL N   LMA + KM R++KR+ P
Sbjct: 369 PVIMGPEKADPASVVFDGVEKAVAEGADILMIDTAGRLQNKENLMAELEKMGRIIKRVIP 428

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            APH  L  LDA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV 
Sbjct: 429 DAPHETLLALDASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVK 488

Query: 288 FLGVGEGINDLEPFVAKDF 306
           F+G GE ++D+  F ++DF
Sbjct: 489 FIGFGEKMDDIGEFHSEDF 507


>gi|86605466|ref|YP_474229.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           JA-3-3Ab]
 gi|86554008|gb|ABC98966.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           JA-3-3Ab]
          Length = 486

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 183/307 (59%), Gaps = 8/307 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++++ E +SW++KL +    T L L   +  ++    LD    E +E +L+++D+GV   
Sbjct: 176 EEISVEEISWLQKLRRSLGKTRLNLINQLKALMGRGPLDREAVETIETMLLQADVGVEAT 235

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM---PLSKPFNWDFSHRPHVILVVGVN 120
           ++I++ L  +   + V  +  +  + + + +ML    P   P         ++ L+VGVN
Sbjct: 236 EQILQALQKRMREEVVPPEEAVKYLKQQMRQMLTVGDPTFAPQRGTL----NIWLIVGVN 291

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAA 179
           GVGKTT IGK++     +G + ++AA DTFR+AAI+QLKIWA+R   + + +    +D A
Sbjct: 292 GVGKTTTIGKIAHVARQSGYQCLIAAADTFRAAAIEQLKIWAERAGVEVIANPSPNADPA 351

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+A+  ++L++DTAGRL N   LM  + K+ R++ +  P A    L VLDA
Sbjct: 352 AVVFDAITAAKARGTELLLVDTAGRLQNKKNLMEELAKIRRIIDKKAPEAKVESLLVLDA 411

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           T GQN LRQ ++F  VA  TG+I+TK+D TA+GG  + I     +P+ F+G GEG+ DL 
Sbjct: 412 TQGQNGLRQAQVFAEVAKLTGVILTKLDSTAKGGIALAITQQMNLPIRFIGAGEGLEDLR 471

Query: 300 PFVAKDF 306
           PF + +F
Sbjct: 472 PFSSYEF 478


>gi|221231938|ref|YP_002511090.1| signal recognition particle 54 FtsY [Streptococcus pneumoniae ATCC
           700669]
 gi|220674398|emb|CAR68948.1| putative signal recognition particle 54 FtsY [Streptococcus
           pneumoniae ATCC 700669]
          Length = 429

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/257 (41%), Positives = 153/257 (59%), Gaps = 6/257 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSH 109
           I SD+GV VA  + EEL  +   ++      L  V  +I K++    K  ++D    F  
Sbjct: 166 IMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQD 223

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              V+L VGVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     
Sbjct: 224 NLTVMLFVGVNGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPV 283

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +D A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P A
Sbjct: 284 VTGPEKADPASVIFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEA 343

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH     LDA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +
Sbjct: 344 PHETFLALDASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLI 403

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D+  F +++F
Sbjct: 404 GFGEKIDDIGEFNSENF 420


>gi|320529031|ref|ZP_08030123.1| signal recognition particle-docking protein FtsY [Selenomonas
           artemidis F0399]
 gi|320138661|gb|EFW30551.1| signal recognition particle-docking protein FtsY [Selenomonas
           artemidis F0399]
          Length = 312

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/261 (44%), Positives = 166/261 (63%), Gaps = 6/261 (2%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SH 109
           L+ +D+GV   + ++  +      K++   R   D+   + K ++ + +  +  F   + 
Sbjct: 44  LLMADVGVKTTETLIAAVRKGIKQKEI---RSPEDLIPFLEKEIVRILEEGDDTFRMAAQ 100

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            P V+LVVG NGVGKTT IGKLS      G  V+LAA DTFR+AAIDQL+IW +RT+A  
Sbjct: 101 GPTVLLVVGTNGVGKTTTIGKLSAYYRRQGKAVLLAAADTFRAAAIDQLEIWGNRTNAQV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V    GSD AA+ ++A + A+A+ VD++I+DTAGRL   S LM  + K+ RV+ R  P A
Sbjct: 161 VKHAEGSDPAAVVFDAMQAAKARGVDIVIVDTAGRLQTKSNLMQELEKIYRVIGREIPGA 220

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH  L VLDA TGQNA+ Q E+F   A  +G+++TK+DGTA+GG  I I     IP+ ++
Sbjct: 221 PHETLLVLDAGTGQNAISQAELFTKAAPVSGVVLTKLDGTAKGGVTIGIKSQLSIPIKWI 280

Query: 290 GVGEGINDLEPFVAKDFSAVI 310
           GVGEG++DL PF A+DF + +
Sbjct: 281 GVGEGVDDLRPFRAEDFVSAL 301


>gi|298490713|ref|YP_003720890.1| signal recognition particle-docking protein FtsY ['Nostoc azollae'
           0708]
 gi|298232631|gb|ADI63767.1| signal recognition particle-docking protein FtsY ['Nostoc azollae'
           0708]
          Length = 518

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 180/315 (57%), Gaps = 6/315 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + ++ E ++W++KL +G   T   +   +  I+    L+     E+E LL+++D+GV   
Sbjct: 204 EDISMEEITWLKKLRQGLDKTRRNILNQLKAIVGQGPLNQAAVSEIEALLLQADVGVEAT 263

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119
             +++ L  K   +  +    +  + +++  ML  P        F+       + L+ GV
Sbjct: 264 DFMIDALQKKLRDEVTAPDEAIAYLKKILRDMLDAPNKATEKSTFAPEKDNLSIWLITGV 323

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGK++     +G K ++ A DTFR+AA++Q+K+W  R+  + + +    +D 
Sbjct: 324 NGAGKTTTIGKIAHLAHKSGYKCLIGAADTFRAAAVEQVKVWGSRSGVEVIANPGQNTDP 383

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQ++  ++L+IDTAGRL N   LM  + K+ R++ +  P+     L VLD
Sbjct: 384 AAVVFDAITAAQSRGTELLLIDTAGRLQNKRNLMDELSKIRRIIDKKAPNIHVESLLVLD 443

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +T GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G GEGI DL
Sbjct: 444 STLGQNGLRQAEVFSQAAQVSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 503

Query: 299 EPFVAKDF-SAVITG 312
            PF + +F  A++ G
Sbjct: 504 RPFSSYEFVEALLNG 518


>gi|238809629|dbj|BAH69419.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 355

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/276 (38%), Positives = 164/276 (59%), Gaps = 12/276 (4%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           + +++   +ELE++LI SDI   +   I+  +  +  A+ +   +   D+ EL+   +  
Sbjct: 72  KEINEEFFDELEEILIMSDINAKLVYAIITHIKNEVRARGLKDTK---DIGELVADQMFV 128

Query: 99  L-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +           N+    R ++ + VGVNG GKTT I K++ K    G KV++AAGDTFR
Sbjct: 129 VYTNKSIVDTTLNYQ-DGRLNIFIFVGVNGSGKTTSIAKIAYKYIKEGKKVLIAAGDTFR 187

Query: 152 SAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           + A+DQL +WA+R  A  V   + G D +++ YEA ++AQ +K D+L+IDTAGRL N   
Sbjct: 188 AGAVDQLGVWAERVGAPIVKPVKEGVDPSSVVYEALEKAQNEKYDLLLIDTAGRLQNKVN 247

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + KM  ++ R    APH  L VLDATTGQN + Q   F  VA  TG+I+TKMDGT+
Sbjct: 248 LMKELEKMYGIIARFQDKAPHECLLVLDATTGQNGVSQARSFKEVAAPTGIILTKMDGTS 307

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +GG ++ I     + V ++G+GEG++DL+ F   +F
Sbjct: 308 KGGIVLLIKDEFDLNVKYIGLGEGLDDLQEFDLDNF 343


>gi|317487348|ref|ZP_07946140.1| signal recognition particle-docking protein FtsY [Bilophila
           wadsworthia 3_1_6]
 gi|316921398|gb|EFV42692.1| signal recognition particle-docking protein FtsY [Bilophila
           wadsworthia 3_1_6]
          Length = 514

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/296 (39%), Positives = 178/296 (60%), Gaps = 3/296 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL +G   T  +L +G++ + +S   L     +ELE+L I +D+GV  A ++ + L ++ 
Sbjct: 218 KLHQGLERTREQLGKGLSTLFASHGDLSADFWDELEELFIMADMGVEAATELCKRLKSRA 277

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            A   +    L  +  L  ++      P      + P V+L++GVNGVGKTT I KL+ +
Sbjct: 278 RAASATTPEELRPL--LAAELEDIFRIPRRVVAVNPPEVVLIIGVNGVGKTTTIAKLAYR 335

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G KV+LAA DTFR+AA++QL IWA+RT + F      +D AA+A+EA   A   + 
Sbjct: 336 ARMQGKKVLLAAADTFRAAAVEQLGIWAERTGSGFHSKGQDADPAAVAWEAMDVAIRDQY 395

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D+L IDTAGRLH  S LM  + K+  V+ R  P APH  + ++DATTGQNAL+Q ++F  
Sbjct: 396 DILFIDTAGRLHTKSNLMDELHKIREVIARKHPGAPHRSILIVDATTGQNALQQTKIFKE 455

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            AG   LI+TK+DGTA+GG  + + + + IP+ ++G+GE + DL PF   DF+  +
Sbjct: 456 AAGIDELILTKLDGTAKGGVAVAVSMQYGIPITYVGLGEKMEDLRPFNGDDFAKAL 511


>gi|300811725|ref|ZP_07092199.1| signal recognition particle-docking protein FtsY [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497301|gb|EFK32349.1| signal recognition particle-docking protein FtsY [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 432

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/274 (37%), Positives = 164/274 (59%), Gaps = 5/274 (1%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIH 93
           R +D+   ++LE+LLI SD+G   ++++ ++L     L K   +D   + ++  + E+  
Sbjct: 151 RTVDEDFFDDLEELLIESDVGYETSEELTDQLREEAKLQKAKRRDDLKRVIVQKLVEVYD 210

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           +     ++   +D + +P+V L VGVNG GKTT +GKL+K+  D G KV+L A DTFR+ 
Sbjct: 211 ENANSENEKLAYDPNAKPNVYLFVGVNGAGKTTTVGKLAKRFHDQGKKVLLVAADTFRAG 270

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++QL  W  RT    V     +D AA+ Y+  ++A A++ D L++DTAGRL N   LM 
Sbjct: 271 AVEQLVEWGKRTGVPVVTGPDKADPAAVVYDGLERAIAEEADYLLVDTAGRLQNKVNLMN 330

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ R +K+  P  P   L VLD +TGQNAL Q + F      +GL++TK+DG+++GG
Sbjct: 331 ELEKIQRTIKKRLPDQPAETLLVLDGSTGQNALLQAKDFDKTTKLSGLVLTKLDGSSKGG 390

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            ++ I    K+PV  +G+GE   DL  F A +++
Sbjct: 391 VVLSIRHEMKLPVKLVGLGEKAEDLADFDAANYA 424


>gi|218441933|ref|YP_002380262.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 7424]
 gi|218174661|gb|ACK73394.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 7424]
          Length = 461

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/315 (35%), Positives = 187/315 (59%), Gaps = 6/315 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + V    ++W+++L +G   T   L   +  I+    L++    E+E LL+++D+G+   
Sbjct: 147 EDVTEAEINWLKRLREGLGKTRRSLVNQLKAIVGQGPLNEDAVMEIEALLLQADVGIEAT 206

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVI---LVVGV 119
             I+E L  K   + +  ++ +  + E+I ++L  PL    N  F     V+   L+ GV
Sbjct: 207 DYIIEALQGKLREESLPPEQAIEYLKEIIREILDRPLKNVDNITFEPEKEVLNIWLLTGV 266

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGKL+   + +G   ++AA DTFR+AA++Q+KIW +R+  + + +    +D 
Sbjct: 267 NGAGKTTTIGKLAHMANQSGYSCLIAAADTFRAAAVEQVKIWGERSGTEVIANPGKNTDP 326

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++    AQ+++VD+L++DTAGRL N   LM  + K+ R++ +  P+A    L VLD
Sbjct: 327 AAVVFDGISAAQSRQVDLLLVDTAGRLQNKKNLMDELAKIRRIVDKKAPNAKVESLLVLD 386

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN LRQ ++F   A  +G+++TK+DGTA+GG  + +     +P+ F+G GEGI DL
Sbjct: 387 ATLGQNGLRQAQVFSEAAKLSGVVLTKLDGTAKGGVALAVAQQLNLPIRFIGAGEGIEDL 446

Query: 299 EPFVAKDF-SAVITG 312
            PF + +F  A++ G
Sbjct: 447 RPFSSYEFVEALLNG 461


>gi|254458468|ref|ZP_05071893.1| signal recognition particle-docking protein FtsY [Campylobacterales
           bacterium GD 1]
 gi|207084776|gb|EDZ62063.1| signal recognition particle-docking protein FtsY [Campylobacterales
           bacterium GD 1]
          Length = 297

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 177/304 (58%), Gaps = 15/304 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           GF   SL         ++ +R     + ELED+L+ +D+   + + I+ E+   +  +D+
Sbjct: 3   GFIKKSLARTADAIRTVAPKRKISFTKGELEDILLEADVEYDLVEIIINEIYQDKVTRDI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
              ++L  ++   +K      +P   +F+  P V L+VGVNG GKTT I KL+++  + G
Sbjct: 63  LRSKLLATLAYTSYK------EP---EFTA-PFVELIVGVNGAGKTTTISKLAQRYKNEG 112

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L AGDTFR+AAI+QL +W+ +     V S+ G D++A+A++    A+AK  D +II
Sbjct: 113 KKVILGAGDTFRAAAIEQLTLWSKKLDIPIVSSKQGHDSSAVAFDTIDSAKAKGFDNVII 172

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH  + L   + K+ R+  +  P +PH  + ++D T G +A+ Q + F+ + G  
Sbjct: 173 DTAGRLHTQTNLANELKKINRICDKAHPGSPHRTILIIDGTQGNSAIAQAKAFNEMIGID 232

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD--YG 317
           G+I+TK+DGTA+GG +  I    ++P+ F+G GE   +L PF   +F   + G LD  + 
Sbjct: 233 GIIITKLDGTAKGGSIFSIAYALELPILFVGTGEQPENLTPFDKYEF---VDGLLDAIFV 289

Query: 318 EEKI 321
           EE+I
Sbjct: 290 EEEI 293


>gi|50365053|ref|YP_053478.1| signal recognition particle, cell division protein GTPase
           [Mesoplasma florum L1]
 gi|50363609|gb|AAT75594.1| signal recognition particle, cell division protein GTPase
           [Mesoplasma florum L1]
          Length = 367

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/288 (37%), Positives = 178/288 (61%), Gaps = 12/288 (4%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL 99
           +DD   +ELE++LI++D+G+ +  KI   +  +R  K+ S      ++ +E I+ +    
Sbjct: 80  MDDDFFDELEEVLIKTDMGMKMVLKISNNI--RRKVKNTSEANEFREILAEEIYDIYTDG 137

Query: 100 SK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           SK     N++   R +V +V+GVNG GKTT + K++   ++   KV++AA DTFR+ AI+
Sbjct: 138 SKKVEELNFE-DGRLNVFMVIGVNGTGKTTSLSKIANYYAEQNKKVLIAAADTFRAGAIE 196

Query: 157 QLKIWADR---TSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           QL+ W D+      D V   +   D A++ ++A ++A+A+  D+L+IDTAGRL N   LM
Sbjct: 197 QLEEWVDKRLDNKVDLVKGKKQNQDPASVVFDALEKAKAENYDLLLIDTAGRLQNKINLM 256

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + KM +++ + D  APH +L V+DATTGQN + Q + F+ VA  TG+++TKMDGT++G
Sbjct: 257 KELEKMYQIVHKFDKKAPHELLLVIDATTGQNGVMQAQEFNEVADVTGIVLTKMDGTSKG 316

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPF-VAKDFSAVITGCLDYGEE 319
           G  + I     IPV  +GVGE ++D+E F V +   +++ G ++  EE
Sbjct: 317 GIALSIKDQLNIPVKLVGVGEQVDDIEKFDVDQYVYSLVVGFMEDKEE 364


>gi|46446933|ref|YP_008298.1| signal recognition particle [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400574|emb|CAF24023.1| probable signal recognition particle [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 309

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/275 (41%), Positives = 166/275 (60%), Gaps = 14/275 (5%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV---LYDVSELIHKML 96
           ++D+   E+LE LL  +D GV  A ++ E++      +D+  Q       D  E + + L
Sbjct: 35  KIDEHTLEQLEQLLYEADFGVKTASELTEKI------RDLHRQHPNLKTEDYIEALKQQL 88

Query: 97  MPLSKPFNWDF-----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           + L   +  +      S  P +IL+VGVNG GKTT + KL+ +    G KV++AA DTFR
Sbjct: 89  ISLVSQYPSNLLELTSSQLPQIILIVGVNGNGKTTSVAKLAYQFKQKGKKVLVAAADTFR 148

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           +AAI+QL++WA +   + V     SD AA+A++A + A+A+K D++IIDTAGRLH  + L
Sbjct: 149 AAAIEQLELWAHKLHIEIVKGHPKSDPAAVAFDAIQAAKARKCDLVIIDTAGRLHTKTPL 208

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + K+ R  ++     PH  L VLDATTGQNA+ Q + FH     TGLI+TK+DGTA+
Sbjct: 209 MQELEKIKRSCQKASQTGPHETLLVLDATTGQNAIEQAKQFHHFTPITGLILTKLDGTAK 268

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GG +I I     IPV F+G GEG  DL+PF  + F
Sbjct: 269 GGIVIAIQRELGIPVKFIGTGEGEEDLQPFDVQTF 303


>gi|42561024|ref|NP_975475.1| cell division protein FtsY [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|42492521|emb|CAE77117.1| Cell division protein FtsY [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
          Length = 400

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/271 (38%), Positives = 170/271 (62%), Gaps = 9/271 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           ++ DD   EELED+LI++D+G+ +  K V  L+ K+  +D S + +   + E +++    
Sbjct: 110 KQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 168

Query: 99  ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
               +K +  DF  +R ++ ++VGVNG GKTT + K++   ++ G KV++AA DTFR+ A
Sbjct: 169 NDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 228

Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             QL+ W         D V  +++ +D A++ ++A K+A+ +  D+L+IDTAGRL N   
Sbjct: 229 TQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKVN 288

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LMA + KM +++++++  APH VL V+DATTGQN + Q E F  VA  +G+I+TKMD T+
Sbjct: 289 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 348

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +GG  + I     IP+  +GVGE ++DL  F
Sbjct: 349 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 379


>gi|159030302|emb|CAO91197.1| ftsY [Microcystis aeruginosa PCC 7806]
          Length = 444

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/315 (35%), Positives = 190/315 (60%), Gaps = 6/315 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + V+ E ++W++KL +G   T   L   +  ++    L+    EE+E LL+++D+GV   
Sbjct: 129 EDVSEEEITWLKKLRQGLGKTRRSLVNQLKAVVGQGPLNQDAVEEIEALLLQADVGVDAT 188

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119
             I+  L  K   + +  ++ +  + E+I ++L  PL+   N  F       ++ ++ GV
Sbjct: 189 DYIITTLQNKLKQEALPPEKAIEYLKEIIREILDAPLANYSNPGFEPEKGKLNIWMLTGV 248

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NGVGKTT IGKL+     +G   ++AA DTFR+AA++Q+K+W +R+  + + +    +D 
Sbjct: 249 NGVGKTTTIGKLAHLSKQSGYSCIIAAADTFRAAAVEQVKVWGERSQVEVIANPGKNTDP 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+  + A++++V++L++DTAGRL N   LMA + K+ R++ +    A    L VLD
Sbjct: 309 AAVVYDGIEAAKSREVELLLVDTAGRLQNKKNLMAELSKIRRIIDKKAESAVVESLLVLD 368

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN LRQ E+F   A  +G+I+TK+DGTA+GG  + +     +P+ F+G GEGI DL
Sbjct: 369 ATLGQNGLRQAEVFSEAAQLSGVILTKIDGTAKGGVALAVARQLNLPIRFVGAGEGIEDL 428

Query: 299 EPFVAKDF-SAVITG 312
            PF + +F  A+++G
Sbjct: 429 RPFSSYEFVEALLSG 443


>gi|301321333|gb|ADK69976.1| signal recognition particle-docking protein FtsY [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 412

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/271 (38%), Positives = 170/271 (62%), Gaps = 9/271 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           ++ DD   EELED+LI++D+G+ +  K V  L+ K+  +D S + +   + E +++    
Sbjct: 122 KQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 180

Query: 99  ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
               +K +  DF  +R ++ ++VGVNG GKTT + K++   ++ G KV++AA DTFR+ A
Sbjct: 181 NDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGA 240

Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             QL+ W         D V  +++ +D A++ ++A K+A+ +  D+L+IDTAGRL N   
Sbjct: 241 TQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKVN 300

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LMA + KM +++++++  APH VL V+DATTGQN + Q E F  VA  +G+I+TKMD T+
Sbjct: 301 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 360

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +GG  + I     IP+  +GVGE ++DL  F
Sbjct: 361 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 391


>gi|225374439|ref|ZP_03751660.1| hypothetical protein ROSEINA2194_00054 [Roseburia inulinivorans DSM
           16841]
 gi|225213677|gb|EEG96031.1| hypothetical protein ROSEINA2194_00054 [Roseburia inulinivorans DSM
           16841]
          Length = 312

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/321 (39%), Positives = 187/321 (58%), Gaps = 15/321 (4%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++ E   +  +L  G + T   +  GI  + +    +DD   EE+E++LI  DIGV   +
Sbjct: 1   MSEEKKGFWSRLVSGLSKTRDNIVSGIDAVFNGFSNIDDDFYEEIEEILIMGDIGVNATE 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGV 119
            I+E L  K+  K+  ++    D +E    ++  + +  +     + F +   V+LV+GV
Sbjct: 61  AIIENL--KKKVKENHIK----DPAECKELLINSIKEQMDVGETAYRFENEKSVVLVIGV 114

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT +GKL+ K+ D G KV+LAA DTFR+AA  QL+ WA+R   + +  + G+D  
Sbjct: 115 NGVGKTTSVGKLAGKLKDQGKKVVLAAADTFRAAAGTQLQEWANRAGVEMIGGQEGADPG 174

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A   A+A+  DVL+ DTAGRLHN   LM  + K+ R+L++  P A    L VLDA
Sbjct: 175 AIVYDAVAAAKARNADVLLCDTAGRLHNKKNLMEELRKINRILEKEYPDAFRETLVVLDA 234

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q   F  VA  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I DL+
Sbjct: 235 TTGQNALAQAREFADVADITGIILTKMDGTAKGGIAVAIHSELGIPVKYIGVGETIEDLQ 294

Query: 300 PFVAKDFSAVITGCLDYGEEK 320
            F +  F   +    D  E+K
Sbjct: 295 KFDSNQF---VNALFDVQEDK 312


>gi|297824631|ref|XP_002880198.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297326037|gb|EFH56457.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 366

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/274 (40%), Positives = 165/274 (60%), Gaps = 9/274 (3%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQRVLY-DVSELIHKMLM 97
           D V +ELE+ L+ SD G  +  +IVE L    ++ +      ++  L   V E++ K   
Sbjct: 94  DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKGSVLEMLAKKNT 153

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                  +    +P VI++VGVNG GKTT +GKL+ ++ + G KV++AAGDTFR+AA DQ
Sbjct: 154 KTELQLGF---RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQ 210

Query: 158 LKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           L+IWA+RT  + V +E   + AA +  +A K+ + +  DV++ DT+GRLH N  LM  + 
Sbjct: 211 LEIWAERTGCEIVVAEGEKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI 270

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
              + + ++   AP+ +L VLD  TG N L Q   F+ V G TGLI+TK+DG+ARGG ++
Sbjct: 271 ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVV 330

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            +V    IPV F+GVGE + DL+PF  + F   I
Sbjct: 331 SVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 364


>gi|307103932|gb|EFN52189.1| hypothetical protein CHLNCDRAFT_139411 [Chlorella variabilis]
          Length = 355

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/300 (42%), Positives = 174/300 (58%), Gaps = 13/300 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDG--VREELEDLLIRSDIGVAVAQKIVEELLTK 73
           ++ KG + T  KL   I ++ +   LDD     EELED LI SD G   A KIV+ +  K
Sbjct: 39  RIVKGTSKTREKLGV-IEELFTYWNLDDADETLEELEDALIMSDFGPRTAFKIVDGIRDK 97

Query: 74  RYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKL 131
             A  +    ++  ++ + I  +L              +P V+L+VGVNG GKTT IGKL
Sbjct: 98  VLAGQLKTGDQIRAELKQSIAALLAERGGSAELALPDSKPAVLLIVGVNGGGKTTTIGKL 157

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA---ALAYEAFK 187
           + +  ++ G KV+L AGDTFR+AA +QL+ WA R  AD V ++  SD A    + Y+A  
Sbjct: 158 AHRFGAEGGAKVVLGAGDTFRAAAAEQLEEWARRAGADIVRAD--SDKARPDTVLYQAVD 215

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR-VLKRLDPHAPHSVLQVLDATTGQNAL 246
            A     D+++ DT+GRLH N  LM  + K  R + KRLD  APH VL VLD TTG N L
Sbjct: 216 AAVRGGADLVLCDTSGRLHTNWSLMDELAKCKRSIAKRLD-GAPHEVLLVLDGTTGLNML 274

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F+     TG+I+TK+DGTARGG ++ +V    +PV F+GVGEG+ DL+PF    F
Sbjct: 275 NQAKEFNETVQLTGIILTKLDGTARGGAVVSVVDELGVPVKFVGVGEGVQDLQPFQPATF 334


>gi|284048839|ref|YP_003399178.1| signal recognition particle-docking protein FtsY [Acidaminococcus
           fermentans DSM 20731]
 gi|283953060|gb|ADB47863.1| signal recognition particle-docking protein FtsY [Acidaminococcus
           fermentans DSM 20731]
          Length = 305

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/298 (39%), Positives = 174/298 (58%), Gaps = 4/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S++ +L  G + T     E + D++ +S  LD+   +E+E +L+  D+G+   +KI+  
Sbjct: 1   MSFMEQLKDGLSKTRKNFTERMEDLVGASVDLDEDFMDEMEMILVAGDVGIKTTEKIMAA 60

Query: 70  LLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      + + S    L  +   I  +L          F   P ++LVVGVNGVGKTT I
Sbjct: 61  LRKAAATRQIKSPAEALPFLKSYIADLLKTTGPRMR--FKGHPSIVLVVGVNGVGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS      G KVM+ A DTFR+ A +QL+IW  +   D +    G+D AA+ Y+  K 
Sbjct: 119 GKLSNYYRLMGYKVMMCAADTFRAGATEQLQIWGKKAQVDVIAHGDGADPAAVVYDGVKA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A A+K DVL +DTAGRLHN + LM  + K+ RV+++  P  PH  L VLDATTGQNA+ Q
Sbjct: 179 AIARKADVLFVDTAGRLHNKTNLMKELDKIYRVIRKEIPDGPHETLLVLDATTGQNAISQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            ++F   A  TG+++TK+DGTA+GG ++ I     + V ++G+GEG+ D  PF  + F
Sbjct: 239 AKIFLETAHVTGVVLTKLDGTAKGGVVVAIKEELGLDVKWIGIGEGMMDFRPFDPQQF 296


>gi|16330588|ref|NP_441316.1| cell division protein FtsY [Synechocystis sp. PCC 6803]
 gi|3334191|sp|P73930|FTSY_SYNY3 RecName: Full=Cell division protein ftsY homolog
 gi|1653079|dbj|BAA17996.1| cell division protein; FtsY [Synechocystis sp. PCC 6803]
          Length = 504

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/313 (35%), Positives = 188/313 (60%), Gaps = 6/313 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V++E + W+RKL +G + T + L   +  I+    L++   EE+E +L+++D+GV     
Sbjct: 192 VSAEEIDWLRKLRQGLSKTRVNLVNQLKSIVGQGPLNEAAVEEIEAILLQADVGVEATDY 251

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGVNG 121
           I+  L  K   + +  ++ +  + E++  +L  PL    + +F+      +V L+ GVNG
Sbjct: 252 IITTLQDKLREEALPPEQAIEFLKEILRSILDRPLLSLPSAEFAPEAEGLNVWLLTGVNG 311

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT IGKL+     +G   ++AA DTFR+AA++Q+K+W +R+    + +    +D AA
Sbjct: 312 AGKTTTIGKLAFMAKQSGYDCVIAAADTFRAAAVEQVKVWGERSGVPVIANPGQNTDPAA 371

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+    AQ++ V++L++DTAGRL N   LM  + K+ R++ +  P+A    L VLDAT
Sbjct: 372 VVYDGISAAQSRNVNLLLVDTAGRLQNKKNLMDELAKIRRIIDKKAPNATVESLLVLDAT 431

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQN LRQ E+F   A  +G+++TK+DG+A+GG  + +     +P+ F+G GEGI DL P
Sbjct: 432 LGQNGLRQAEVFAEAAKLSGVVLTKLDGSAKGGVALAVAQQLNLPIRFIGAGEGIEDLRP 491

Query: 301 FVAKDF-SAVITG 312
           F + +F  A++ G
Sbjct: 492 FSSYEFVEALLNG 504


>gi|153816161|ref|ZP_01968829.1| hypothetical protein RUMTOR_02409 [Ruminococcus torques ATCC 27756]
 gi|317500481|ref|ZP_07958705.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331089418|ref|ZP_08338317.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145846496|gb|EDK23414.1| hypothetical protein RUMTOR_02409 [Ruminococcus torques ATCC 27756]
 gi|316898236|gb|EFV20283.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330404786|gb|EGG84324.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 312

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/304 (43%), Positives = 189/304 (62%), Gaps = 10/304 (3%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            E   + R+L  G A T   +  G+  I     ++D+   EELE+ LI  D+GV    +I
Sbjct: 2   EEKKGFFRRLVSGLAKTRDNIVSGMDSIFHGFSKIDEEFYEELEETLIMGDLGVHSTMEI 61

Query: 67  VEELLTK---RYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +E+L  K   R+ K+ +  +++L D   +  +M +  +    ++F +R  V+ V+GVNGV
Sbjct: 62  LEDLRAKVKERHIKEPIECRQLLID--SIREQMDVGETA---YEFENRTSVVFVIGVNGV 116

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ K+   G KV+LAA DTFR+AA +QL+ WA+R  AD +  + G+D AA+ 
Sbjct: 117 GKTTTIGKLAGKLKSQGKKVVLAAADTFRAAAGEQLREWANRADADMIGGQEGADPAAVI 176

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A+A+  DVL+ DTAGRLHN   LM  + K+ RV+ R  P A    L VLDATTG
Sbjct: 177 YDAVAAAKARHADVLLCDTAGRLHNKKNLMEELKKINRVIDREYPEAFRETLVVLDATTG 236

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q + F+ VA  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I+DL+ F 
Sbjct: 237 QNALAQAKEFNEVADITGVILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIDDLQKFD 296

Query: 303 AKDF 306
           A +F
Sbjct: 297 ADEF 300


>gi|285206567|gb|ADC35059.1| cell division membrane protein FtsY [Diplorickettsia massiliensis]
          Length = 241

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 94/212 (44%), Positives = 136/212 (64%), Gaps = 1/212 (0%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+G+ V ++I+ EL  K + +  +  Q V   +   +  +L P  +P   + S++P VI
Sbjct: 30  ADVGLTVTEEIINELTQKLHRQQLIDGQAVWTALEHALTALLKPCEQPLCIEVSNKPFVI 89

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           LV+GVNGVGKTT IGKL+      G +V+LAAGDTFR+AA +QL  WA+R     +    
Sbjct: 90  LVIGVNGVGKTTTIGKLAHYFKSQGKQVLLAAGDTFRAAATEQLAAWAERNEVPIIAQHQ 149

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D+A++ Y+A + AQA+ +D+LI DTAGRLH    LM  + K+ +VL +LDP APH  L
Sbjct: 150 GADSASVIYDALQAAQARNIDILIADTAGRLHTKEHLMQELAKVKKVLAKLDPAAPHETL 209

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            VLDA+ GQN+L Q + FH     TGL +TK+
Sbjct: 210 LVLDASIGQNSLAQAQFFHQSIQLTGLALTKL 241


>gi|307244289|ref|ZP_07526404.1| signal recognition particle-docking protein FtsY
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492439|gb|EFM64477.1| signal recognition particle-docking protein FtsY
           [Peptostreptococcus stomatis DSM 17678]
          Length = 431

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/262 (43%), Positives = 165/262 (62%), Gaps = 11/262 (4%)

Query: 56  SDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHR 110
           +D+GV    +I++   +++ +R  KD        +V +L+ +++  +    N   D    
Sbjct: 176 ADVGVTTTMEIIDRLRDMIKERGVKDP------IEVRDLLKEIVASILNEGNSGLDLDPG 229

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VI++VGVNGVGKTT IGKL+++    G KVMLAA DTFR+AA +QL IWA R   D +
Sbjct: 230 PAVIVMVGVNGVGKTTTIGKLAQRYKKDGKKVMLAAADTFRAAASEQLDIWAKRVDVDII 289

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G+D  A+ ++A K +QA+KVD+LI DTAGRLHN + LM  +GK+ +++ R  P A 
Sbjct: 290 KHHEGADPGAVVFDAIKASQARKVDLLICDTAGRLHNKANLMNELGKIFKIIDREYPEAK 349

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             VL V+DATTGQNA+ Q + F  VA  TG+++TK+DGTA+GG ++ +     +PV  +G
Sbjct: 350 KEVLLVVDATTGQNAVSQAKTFKEVANITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIG 409

Query: 291 VGEGINDLEPFVAKDFSAVITG 312
           VGE   DL+ F A  F+  I G
Sbjct: 410 VGERAEDLQSFDADSFTDAIFG 431


>gi|298385678|ref|ZP_06995236.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           1_1_14]
 gi|298261819|gb|EFI04685.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           1_1_14]
          Length = 319

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/297 (40%), Positives = 180/297 (60%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  KR 
Sbjct: 15  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A D  V+ Q + + + + I  +L   +      F+     +P+V++VVGVNGVGKTT IG
Sbjct: 74  AADKYVNTQELNHILRDEIAALLTENNSDDVADFDVPIEKKPYVMMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A++A++    A
Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGTDPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V+K++ P+AP  VL VLD +TGQNA  Q 
Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F   +F
Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 310


>gi|238854772|ref|ZP_04645102.1| cell division protein FtsY [Lactobacillus jensenii 269-3]
 gi|260664004|ref|ZP_05864857.1| signal recognition particle-docking protein FtsY [Lactobacillus
           jensenii SJ-7A-US]
 gi|282933850|ref|ZP_06339198.1| FtsY-like protein [Lactobacillus jensenii 208-1]
 gi|238832562|gb|EEQ24869.1| cell division protein FtsY [Lactobacillus jensenii 269-3]
 gi|260561890|gb|EEX27859.1| signal recognition particle-docking protein FtsY [Lactobacillus
           jensenii SJ-7A-US]
 gi|281301939|gb|EFA94193.1| FtsY-like protein [Lactobacillus jensenii 208-1]
          Length = 437

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 101/275 (36%), Positives = 160/275 (58%), Gaps = 8/275 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           R +D+   +ELEDLLI SD+G   +++++++L  +   ++V     L  +  ++ K++  
Sbjct: 157 RSVDENFFDELEDLLIESDVGFETSEELIDQLKDEAKLQNVKSHDELKKL--IVQKLVEI 214

Query: 99  LSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
             +  + D         + +V L VGVNG GKTT IGKL+++    G KV+L A DTFR+
Sbjct: 215 YDQNGDADAEKLTYNEGKTNVYLFVGVNGAGKTTTIGKLAQRFKQEGKKVVLVAADTFRA 274

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A++QLK W  RT  + V   + +D A++ Y+  K    +  D +++DTAGRL N   LM
Sbjct: 275 GAVEQLKEWGKRTETEVVTGPVQADPASVVYDGVKHGLEEDADYVLVDTAGRLQNKQNLM 334

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+ R +K+L P  P   L VLD +TGQNAL Q + F      TGL++TK+DG+++G
Sbjct: 335 KELEKIERTIKKLVPDQPCETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKG 394

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           G ++ I    K+PV  +G+GE   DL  F A  ++
Sbjct: 395 GVILAIRNEMKLPVKLVGLGEKAEDLADFDAASYA 429


>gi|253568254|ref|ZP_04845665.1| recognition particle-docking protein FtsY [Bacteroides sp. 1_1_6]
 gi|251842327|gb|EES70407.1| recognition particle-docking protein FtsY [Bacteroides sp. 1_1_6]
          Length = 319

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/297 (40%), Positives = 180/297 (60%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  KR 
Sbjct: 15  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A D  V+ Q + + + + I  +L   +      F+     +P+V++VVGVNGVGKTT IG
Sbjct: 74  AADKYVNTQELNHILRDEIAALLTENNSDDVADFDVPIEKKPYVMMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A++A++    A
Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V+K++ P+AP  VL VLD +TGQNA  Q 
Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F   +F
Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 310


>gi|78777041|ref|YP_393356.1| cell division transporter substrate-binding protein FtsY
           [Sulfurimonas denitrificans DSM 1251]
 gi|78497581|gb|ABB44121.1| signal recognition particle-docking protein FtsY [Sulfurimonas
           denitrificans DSM 1251]
          Length = 292

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 172/297 (57%), Gaps = 15/297 (5%)

Query: 20  GFASTSL-KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           GF   SL K  E +  ++  ++L    + E+E++L+ +D+  A+ + I+ EL   +  ++
Sbjct: 3   GFIKKSLHKTAEALKLVVPKKKLSFS-KNEIEEILLEADVEYALVEIIINELYQSKITRE 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           +   ++L  ++   +K        FN      P V L+VGVNG GKTT I KL+ K  + 
Sbjct: 62  ILRPKLLATLAYTSYK-----EPEFN-----APFVELIVGVNGAGKTTTISKLALKYKND 111

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G K+ML AGDTFR+AAI+QL +WA + +   V S+ G D++A+AY+  + A++K  D +I
Sbjct: 112 GKKIMLGAGDTFRAAAIEQLSLWAKKLNIPIVASKQGHDSSAVAYDTIESAKSKGYDHVI 171

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDTAGRLH  + L   + K+ R+  +    APH    ++D T G +A+ Q + F+ + G 
Sbjct: 172 IDTAGRLHTQTNLANELKKIHRICDKAHSGAPHRTTLIIDGTQGNSAIAQAKAFNEMIGV 231

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G+I+TK+DGTA+GG +  I     +P+ ++G GE   +L PF   +F   + G LD
Sbjct: 232 DGIIITKLDGTAKGGSIFSIAYALNLPILYVGTGEQPENLTPFDKYEF---VDGLLD 285


>gi|302335830|ref|YP_003801037.1| signal recognition particle-docking protein FtsY [Olsenella uli DSM
           7084]
 gi|301319670|gb|ADK68157.1| signal recognition particle-docking protein FtsY [Olsenella uli DSM
           7084]
          Length = 301

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 101/278 (36%), Positives = 170/278 (61%), Gaps = 15/278 (5%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKML 96
           +D+G  E+LED L+  D+G  VA  + ++L  +   ++++    ++R L +   L  +  
Sbjct: 28  VDEGFWEDLEDRLVMGDMGAEVAMGVTDDLREQAARENLTTAPRLRRALAE--RLAREFC 85

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           +P   PF       P  ++ VG+NG GKTT +GKL+      G   ++   DTFR+AAI+
Sbjct: 86  VPERDPFE----DLPSCVVFVGINGAGKTTTVGKLAGVARREGTSCLIGGADTFRAAAIE 141

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++W +R+  + V  E G+D A++ Y+  ++A+ +   ++++DTAGRLH++  LM  + 
Sbjct: 142 QLQVWGERSGTEVVTRERGADPASVCYDVIERAEREGTQLVLVDTAGRLHSSPELMRELA 201

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K++ V +R     P SV+ V+DATTGQN L Q + F+      G+++TK+DGTA+GG  I
Sbjct: 202 KVVGVTRRR-SSTPVSVVLVIDATTGQNGLAQAKEFNDALDLDGIVVTKLDGTAKGG--I 258

Query: 277 PIVVTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            + ++H   +P+Y +GVGEGI+DL+ F A +FS  + G
Sbjct: 259 AVAISHNLSLPIYRIGVGEGIDDLQAFDALEFSRALVG 296


>gi|153954024|ref|YP_001394789.1| hypothetical protein CKL_1399 [Clostridium kluyveri DSM 555]
 gi|219854638|ref|YP_002471760.1| hypothetical protein CKR_1295 [Clostridium kluyveri NBRC 12016]
 gi|146346905|gb|EDK33441.1| FtsY [Clostridium kluyveri DSM 555]
 gi|219568362|dbj|BAH06346.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 303

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/296 (43%), Positives = 188/296 (63%), Gaps = 4/296 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  KL  G   T     E ITD++S +  +D+ + EELE++LI  DIGV     I+E L 
Sbjct: 5   FFDKLKNGLEKTKNNFTEKITDLLSKAVNIDEELYEELEEILITCDIGVETTLYIIENLK 64

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   + +    +L + + E+I  +L    +  + + S+ P +ILV+GVNGVGKTT IGK
Sbjct: 65  KKIKEEKIKDPSLLSNSLKEVILDILG--DEENSIEPSNTPEIILVIGVNGVGKTTSIGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  ++ D G KV++AA DTFR+AAI+QL+IW++R   D +  + GSD AA+ ++A + ++
Sbjct: 123 ICCRLKDEGYKVVMAAADTFRAAAIEQLEIWSERAGVDIIKHQPGSDPAAVIFDAIQASK 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K DVL+ DTAGRLHN   LM  + K+ RV+ R    A      VLDATTGQNAL+Q +
Sbjct: 183 ARKADVLVCDTAGRLHNKKNLMEELAKINRVIDREHKEAYRQTFLVLDATTGQNALQQAK 242

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F  V    G+++TK+DGTA+GG +I I  T  IPV  +GVGEGI DL+ F +++F
Sbjct: 243 QFMEVCPIDGIVLTKLDGTAKGGIVISIKHTLNIPVKLIGVGEGIYDLQEFKSREF 298


>gi|29346324|ref|NP_809827.1| recognition particle-docking protein FtsY [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338219|gb|AAO76021.1| recognition particle-docking protein FtsY [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 319

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/297 (40%), Positives = 180/297 (60%), Gaps = 8/297 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  KR 
Sbjct: 15  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRI-EKRA 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A D  V+ Q + + + + I  +L   +      F+     +P+V++VVGVNGVGKTT IG
Sbjct: 74  AADKYVNTQELNHILRDEIAALLTENNSDDVADFDVPIKKKPYVMMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A++A++    A
Sbjct: 134 KLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAFDTLSSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+IIDTAGRLHN   LM  + K+  V+K++ P+AP  VL VLD +TGQNA  Q 
Sbjct: 194 VANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F   +F
Sbjct: 254 KQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEF 310


>gi|294055108|ref|YP_003548766.1| signal recognition particle-docking protein FtsY [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614441|gb|ADE54596.1| signal recognition particle-docking protein FtsY [Coraliomargarita
           akajimensis DSM 45221]
          Length = 310

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 177/305 (58%), Gaps = 2/305 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL- 70
           S  RK   G    +    +    + S  +LD    +ELE+ L  +D GV   ++I++E+ 
Sbjct: 3   SLFRKFKDGLKKQTPTFHKAFDKVFSGAKLDQDALDELEEALYTADFGVETVEEIIDEIK 62

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           +  +  KD+  +      + ++ ++L            H+P VI ++GVNG GKTT   K
Sbjct: 63  VAYKADKDIRGEDAARIGATVLARVLEGAEGRVEVG-KHKPEVIALIGVNGAGKTTTSAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L     + G  ++L A DTFR+AA +Q++ WA R   D V S+ G+D+AA+A++A+  A 
Sbjct: 122 LGHMYQNDGYSILLGACDTFRAAANEQIQHWAKRLKIDIVSSQHGADSAAVAFDAYAAAV 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  D++I+DTAGRLH  + LM  + K  RV+K+ D  APH    V+D + G N++ Q  
Sbjct: 182 SRGRDIVILDTAGRLHTKNNLMKELEKFQRVIKKQDESAPHHAWLVVDGSLGSNSIEQAR 241

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+     +GLI+TK+DGT+RGG L+ I    K+P+YF+G+GE  +DL+PF A++++  I
Sbjct: 242 VFNESFPLSGLIITKLDGTSRGGALVGIYRELKLPIYFVGLGEQPDDLQPFSAENYANAI 301

Query: 311 TGCLD 315
            G  +
Sbjct: 302 FGITE 306


>gi|260063511|ref|YP_003196591.1| signal recognition particle-docking protein FtsY [Robiginitalea
           biformata HTCC2501]
 gi|88782955|gb|EAR14129.1| signal recognition particle-docking protein FtsY [Robiginitalea
           biformata HTCC2501]
          Length = 320

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 113/277 (40%), Positives = 171/277 (61%), Gaps = 5/277 (1%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD-VS 89
           ++   ++DD V + LE++L+ SD+GV    KI+    E +   +Y     + R+L + ++
Sbjct: 35  VVGKSKVDDEVLDNLEEVLVTSDVGVETTLKIIGRIEERVARDKYVGTDELDRILREEIA 94

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            L+ +     +   +      P+V++VVGVNGVGKTT IGKL+ + +  G KV+L A DT
Sbjct: 95  GLLEETHSGEAAEVSLPEVEGPYVVMVVGVNGVGKTTTIGKLAHQFNQQGKKVILGAADT 154

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAI+QL+IWA+R     V   +GSD A++A++    A  ++ D+++IDTAGRLHN  
Sbjct: 155 FRAAAIEQLEIWAERVGVPIVKQRMGSDPASVAFDTLSSAVGQQADIVLIDTAGRLHNKV 214

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + K+ RV++++ P APH VL VLD +TGQNA  Q   F        L +TK+DGT
Sbjct: 215 NLMNELTKVRRVMQKVIPGAPHEVLLVLDGSTGQNAFEQARQFTRATEVNSLAVTKLDGT 274

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A+GG +I I     IPV ++GVGEG+ DL+ F   +F
Sbjct: 275 AKGGVVIGISDQFGIPVKYIGVGEGVEDLQVFNKYEF 311


>gi|1929401|emb|CAA71224.1| ftsY [Mycoplasma mycoides]
          Length = 412

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 103/271 (38%), Positives = 170/271 (62%), Gaps = 9/271 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           ++ DD   EELED+LI++D+G+ +  K V  L+ K+  +D S + +   + E +++    
Sbjct: 122 KQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSFENIKDALVESLYQAYTD 180

Query: 99  ---LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
               +K +  DF  +R ++ ++VGVNG GKTT + K++   ++ G KV++AA DTF + A
Sbjct: 181 NDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFSAGA 240

Query: 155 IDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             QL+ W         D V  +++ +D A++ ++A K+A+ +  D+L+IDTAGRL N + 
Sbjct: 241 TQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTN 300

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LMA + KM +++++++  APH VL V+DATTGQN + Q E F  VA  +G+I+TKMD T+
Sbjct: 301 LMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGIILTKMDSTS 360

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +GG  + I     IP+  +GVGE ++DL  F
Sbjct: 361 KGGIGLAIKELLNIPIKMIGVGEKVDDLLAF 391


>gi|291557098|emb|CBL34215.1| signal recognition particle-docking protein FtsY [Eubacterium
           siraeum V10Sc8a]
          Length = 301

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 127/298 (42%), Positives = 179/298 (60%), Gaps = 5/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    KL  G  +T   L   IT +I+S  ++D+   EELE+ LI SDIG   +  I E 
Sbjct: 1   MGLFEKLKNGLKNTKEALASKITGVINSFTKIDEDFFEELEETLILSDIGAVTSANICEA 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVI 128
           L  +  A   +      +V  L+ K++  + +  N      +P VILV+GVNG GKTT I
Sbjct: 61  LRKEVKATGTTDP---AEVKGLLKKIIAGILEGENELILDTKPTVILVIGVNGAGKTTTI 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  +  +G KV++AA DTFR+AAI+QL++W  R   D +    GSD AA+ ++A K 
Sbjct: 118 GKLAYNLKSSGKKVVVAAADTFRAAAIEQLEVWTQRAGVDIIKHSEGSDPAAVVFDAVKA 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
             A+  DV+I DTAGRLHN   LM  + K+ R++    P +    L VLDATTGQNA+ Q
Sbjct: 178 GIARDADVIICDTAGRLHNKKNLMDELKKIARIVNNNAPDSRVETLLVLDATTGQNAVNQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             +F   A  TG+++TK+DGTA+GG +IPI     IPV  +GVGE I+DL+PFV +D+
Sbjct: 238 ARLFKETADITGIVLTKLDGTAKGGIIIPIKEELGIPVKLVGVGEKIDDLQPFVPRDY 295


>gi|15807251|ref|NP_295981.1| signal recognition particle-docking protein FtsY [Deinococcus
           radiodurans R1]
 gi|6460064|gb|AAF11805.1|AE002058_5 signal recognition particle-docking protein FtsY [Deinococcus
           radiodurans R1]
          Length = 317

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/314 (38%), Positives = 179/314 (57%), Gaps = 27/314 (8%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR------RLDDGVREELEDLLIRSDIGVAVAQ 64
           +SW  +L +G + T  ++  G    +         R+D+   E+LE  LI +D+G A  +
Sbjct: 1   MSWFDRLRQGLSKTRQQIS-GTAGPLDQEVQTAFTRIDN--IEDLEYALIAADVGRAATE 57

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-------FNWDFSH-----RPH 112
           +I+E++   R   +  +Q  L     L    L P ++        F+ D S      + H
Sbjct: 58  EIIEDI---RKNGEGRLQDALMRALTL---QLEPNARRAQFRELGFSPDVSRSKVDPKGH 111

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V++V+GVNGVGKTT I KL +   + G  VM AAGDTFR+AA  QL +W +R     +  
Sbjct: 112 VVMVIGVNGVGKTTTIAKLGQYYMERGQSVMFAAGDTFRAAAGTQLGVWGERLGVPVIQG 171

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G D AA+A++A    +A+  D+L +DTAGRLHN   LM  + K+ RV+ + DP  P  
Sbjct: 172 VDGGDPAAVAFDAAGARKARGTDLLFVDTAGRLHNKHNLMEELKKVRRVIDKADPGEPAE 231

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V  VLDA TGQN L+Q + FH     TG+++TK+DGTA+GG L+PIV    +P+ F+GVG
Sbjct: 232 VWLVLDAVTGQNGLQQAKKFHEATPLTGVVVTKLDGTAKGGILVPIVRELGVPIKFIGVG 291

Query: 293 EGINDLEPFVAKDF 306
           E   DL+PF +++F
Sbjct: 292 EQPGDLQPFDSQEF 305


>gi|314986452|gb|EFT30544.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL005PA2]
 gi|314990812|gb|EFT34903.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL005PA3]
          Length = 396

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 180/292 (61%), Gaps = 12/292 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQR 83
           L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S     + 
Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDPAHARE 164

Query: 84  VLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           VL+   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G  V
Sbjct: 165 VLH--HELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKTV 222

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +    + VDV+++DTA
Sbjct: 223 LLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLVDTA 282

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   TG++
Sbjct: 283 GRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVTGIV 340

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           ++K+DG+A+GG ++ +     +PV  +G+GEG +DL P  A +F   +TG +
Sbjct: 341 LSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPLDADNF---VTGLM 389


>gi|124515715|gb|EAY57224.1| Cell division protein (FtsY) [Leptospirillum rubarum]
          Length = 309

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/295 (39%), Positives = 167/295 (56%), Gaps = 14/295 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL--L 71
           +++L  G   T  KL   +  +    R      EELEDLLI SD+G   A  ++ +L   
Sbjct: 4   LQRLGAGLKKTREKLGNNLAQLFGKER-SPQFYEELEDLLILSDVGPEQATLLIRDLKDW 62

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-----NWDFSHRPHVILVVGVNGVGKTT 126
            K          +L+ + E I     PL+ P      +W    +P VIL+VGVNGVGKTT
Sbjct: 63  EKNSGNGTKGDPLLF-LEERIASFF-PLNPPVWVEQPDW----KPVVILMVGVNGVGKTT 116

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL+ +    G  V+L A DTFR+AA+ QL++W ++     V  + G+D AA+A++  
Sbjct: 117 TTGKLAHRFQQDGKSVILGAADTFRAAAVQQLRLWGEKLEIPVVHQKEGADPAAVAFDTV 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K A A+KVDV IIDTAGRL     LMA +GK+  ++KR     P   L VLD+T GQN +
Sbjct: 177 KAALARKVDVAIIDTAGRLQTKHNLMAELGKIHGLVKREMEDRPFETLIVLDSTLGQNTV 236

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            Q+E F      +G+I+TK+DGT++GG ++ +     +PV F+GVGEG +DL  F
Sbjct: 237 SQMEHFRKAIPVSGMILTKLDGTSKGGIVVSLARKFHLPVRFVGVGEGKDDLVEF 291


>gi|302756335|ref|XP_002961591.1| hypothetical protein SELMODRAFT_77470 [Selaginella moellendorffii]
 gi|302775590|ref|XP_002971212.1| hypothetical protein SELMODRAFT_95155 [Selaginella moellendorffii]
 gi|300161194|gb|EFJ27810.1| hypothetical protein SELMODRAFT_95155 [Selaginella moellendorffii]
 gi|300170250|gb|EFJ36851.1| hypothetical protein SELMODRAFT_77470 [Selaginella moellendorffii]
          Length = 333

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 111/255 (43%), Positives = 158/255 (61%), Gaps = 4/255 (1%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHV 113
           SD G   A KIV+ L     A  +   Q +   + + I K+L   +   +    + RP V
Sbjct: 73  SDFGPRTAIKIVDGLRKDVLAAKLKTGQEIKLALKKSIVKLLTSRAGSTDLKLGTRRPAV 132

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I+VVGVNG GKTT IGKL+ ++  + G+K+++AAGDTFR+AA +QL++WA+RT +D V +
Sbjct: 133 IMVVGVNGGGKTTTIGKLAHRLKKEKGVKILMAAGDTFRAAAKEQLEVWAERTESDIVRA 192

Query: 173 EIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           E G    A +   A K+A A+K D+++ DT+GRLH N  LM  +    + + +    AP+
Sbjct: 193 EEGQKKPAPVLSRAVKRAVAEKFDIVLADTSGRLHTNFSLMDELEDCKKAIGKALAGAPN 252

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            VL VLD TTG N L Q   F+ V G TG ++TK+DGTARGG +  +V    IPV F+GV
Sbjct: 253 EVLMVLDGTTGLNMLPQAREFNDVVGVTGFVLTKLDGTARGGCVASVVDELGIPVKFVGV 312

Query: 292 GEGINDLEPFVAKDF 306
           GEG+ DL+PF A+ F
Sbjct: 313 GEGLEDLQPFDAEAF 327


>gi|294155880|ref|YP_003560264.1| signal recognition particle-docking protein FtsY [Mycoplasma
           crocodyli MP145]
 gi|291600360|gb|ADE19856.1| signal recognition particle-docking protein FtsY [Mycoplasma
           crocodyli MP145]
          Length = 350

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 104/268 (38%), Positives = 164/268 (61%), Gaps = 6/268 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHK 94
           +++DD   +ELE++LI SDI   +  KI+E++  +    ++     +  ++ D   LI+ 
Sbjct: 65  KKIDDEYFDELEEVLIMSDINTDLVFKIIEKIKKEVKTNNIDDPKMIGEIVADQMFLIYT 124

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
               ++   N+  + R +V ++VGVNG GKTT I KL+ +    G KV++AA DTFR+ A
Sbjct: 125 NKTIVNTNLNFK-NERLNVFVMVGVNGSGKTTSIAKLAHRYKMQGKKVVIAAADTFRAGA 183

Query: 155 IDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           +DQL +WA++   D V  +  G+D +++ ++  + A+    D+LIIDTAGRL N   LM 
Sbjct: 184 VDQLSVWANKIGVDIVKPDKEGADPSSVVFKGLEYAKNNYYDLLIIDTAGRLQNKINLMK 243

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + KM  V+++  P APH  L VLD TTGQN L Q ++F  V   +G+I+TKMDGT++GG
Sbjct: 244 ELEKMFGVIRKFVPDAPHEALLVLDGTTGQNGLSQAKVFKEVCQLSGIILTKMDGTSKGG 303

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            +I I     + V  LG+GE ++DL+ F
Sbjct: 304 IVISIKDEFDLNVKLLGLGEKLDDLQEF 331


>gi|167751476|ref|ZP_02423603.1| hypothetical protein EUBSIR_02472 [Eubacterium siraeum DSM 15702]
 gi|167655284|gb|EDR99413.1| hypothetical protein EUBSIR_02472 [Eubacterium siraeum DSM 15702]
 gi|291530283|emb|CBK95868.1| signal recognition particle-docking protein FtsY [Eubacterium
           siraeum 70/3]
          Length = 301

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/298 (42%), Positives = 179/298 (60%), Gaps = 5/298 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    KL  G  +T   L   IT +I+S  ++D+   EELE+ LI SDIG   +  I E 
Sbjct: 1   MGLFEKLKNGLKNTKDALASKITGVINSFTKIDEDFFEELEETLILSDIGAVTSANICEA 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVI 128
           L  +  A   +      +V  L+ K++  + +  N      +P VILV+GVNG GKTT I
Sbjct: 61  LRKEVKATGTTDP---AEVKGLLKKIIAGILEGENELILDTKPTVILVIGVNGAGKTTTI 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  +  +G KV++AA DTFR+AAI+QL++W  R   D +    GSD AA+ ++A K 
Sbjct: 118 GKLAYNLKSSGKKVVVAAADTFRAAAIEQLEVWTQRAGVDIIKHSEGSDPAAVVFDAVKA 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
             A+  DV+I DTAGRLHN   LM  + K+ R++    P +    L VLDATTGQNA+ Q
Sbjct: 178 GIARDADVIICDTAGRLHNKKNLMDELKKIARIVNNNAPDSRVETLLVLDATTGQNAVNQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             +F   A  TG+++TK+DGTA+GG +IPI     IPV  +GVGE I+DL+PFV +D+
Sbjct: 238 ARLFKETADITGIVLTKLDGTAKGGIIIPIKEELGIPVKLVGVGEKIDDLQPFVPRDY 295


>gi|257061559|ref|YP_003139447.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 8802]
 gi|256591725|gb|ACV02612.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 8802]
          Length = 499

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/315 (34%), Positives = 188/315 (59%), Gaps = 6/315 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + +++E ++W+++L +G   T   L   +  I+    L+     E+E LL+++D+G+   
Sbjct: 185 ENISAEEINWLKRLRQGLGKTRRGLVNQLKAIVGQGPLNQDAVMEIEALLLQADVGLEAT 244

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119
             I+ +L  K   + +  ++ +  + E++ ++L  PL +  N  F+      ++ L+ GV
Sbjct: 245 DYIINKLQNKLREESLPSEQAIEYLKEILREILDRPLQQVKNPGFAPEKDTLNIWLMTGV 304

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGKL+     +G   M+AA DTFR+AA++Q+K+W +RT+   + +    +D 
Sbjct: 305 NGAGKTTTIGKLAHLSQKSGYSCMIAAADTFRAAAVEQVKVWGERTNTPVIANPGKNTDP 364

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++    AQ+++ ++L++DTAGRL N   LM  + K+ R++ +  P A    L VLD
Sbjct: 365 AAVVFDGIAAAQSRQTELLLVDTAGRLQNKKNLMEELSKIRRIIDKKAPDAQVEALLVLD 424

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + I     +P+ F+G GEGI DL
Sbjct: 425 ATLGQNGLRQAEVFSESAKLSGVVLTKLDGTAKGGVALAIAQQLNLPIRFIGAGEGIEDL 484

Query: 299 EPFVAKDF-SAVITG 312
            PF + +F  A++ G
Sbjct: 485 RPFSSYEFVEALLNG 499


>gi|218248495|ref|YP_002373866.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 8801]
 gi|218168973|gb|ACK67710.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 8801]
          Length = 499

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/315 (34%), Positives = 188/315 (59%), Gaps = 6/315 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + +++E ++W+++L +G   T   L   +  I+    L+     E+E LL+++D+G+   
Sbjct: 185 ENISAEEINWLKRLRQGLGKTRRGLVNQLKAIVGQGPLNQDAVMEIEALLLQADVGLEAT 244

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGV 119
             I+ +L  K   + +  ++ +  + E++ ++L  PL +  N  F+      ++ L+ GV
Sbjct: 245 DYIINKLQNKLREESLPSEQAIEYLKEILREILDRPLQQVKNPGFAPEKDTLNIWLMTGV 304

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGKL+     +G   M+AA DTFR+AA++Q+K+W +RT+   + +    +D 
Sbjct: 305 NGAGKTTTIGKLAHLSQKSGYSCMIAAADTFRAAAVEQVKVWGERTNTPVIANPGKNTDP 364

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++    AQ+++ ++L++DTAGRL N   LM  + K+ R++ +  P A    L VLD
Sbjct: 365 AAVVFDGIAAAQSRQTELLLVDTAGRLQNKKNLMEELSKIRRIIDKKAPDAQVEALLVLD 424

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + I     +P+ F+G GEGI DL
Sbjct: 425 ATLGQNGLRQAEVFSESAKLSGVVLTKLDGTAKGGVALAIAQQLNLPIRFIGAGEGIEDL 484

Query: 299 EPFVAKDF-SAVITG 312
            PF + +F  A++ G
Sbjct: 485 RPFSSYEFVEALLNG 499


>gi|199597130|ref|ZP_03210562.1| Signal recognition particle GTPase [Lactobacillus rhamnosus HN001]
 gi|258508644|ref|YP_003171395.1| cell division protein signal recognition particle FtsY
           [Lactobacillus rhamnosus GG]
 gi|199591934|gb|EDZ00009.1| Signal recognition particle GTPase [Lactobacillus rhamnosus HN001]
 gi|257148571|emb|CAR87544.1| cell division protein, signal recognition particle FtsY
           [Lactobacillus rhamnosus GG]
 gi|259649950|dbj|BAI42112.1| signal recognition particle GTPase [Lactobacillus rhamnosus GG]
          Length = 331

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 114/301 (37%), Positives = 174/301 (57%), Gaps = 11/301 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73
           K  +G   +     E +  + ++ R +D+   E+LE++LI SD+G   A ++ +EL  + 
Sbjct: 23  KYDEGLEKSRSSFGEKLNALFANFRTVDEDFFEDLEEMLIESDVGFETAVRLSDELREEV 82

Query: 74  --RYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTV 127
             + AKD  +V RV+  V +L+  M     K  +         P V L VGVNG GKTT 
Sbjct: 83  KLKNAKDPKAVSRVI--VEKLVD-MYGEAGKGEDNQLHFAEEGPTVFLFVGVNGAGKTTT 139

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +GKL+ ++ + G +V+L A DTFR+ AI QL+ W  R     V +  G D AA+ ++  K
Sbjct: 140 VGKLAHQLKEEGKRVLLVAADTFRAGAIQQLQEWGRRVEVPVVATNPGGDPAAVVFDGVK 199

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+ +  DV+++DTAGRL N   LM  + K+ RV+ R  P AP  VL VLDATTGQNAL 
Sbjct: 200 RAKDEGYDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQNALN 259

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+     TG+++TK+DG+ +GG ++ I     +PV  +G+GE ++DL+ F    F 
Sbjct: 260 QAKEFNQTTQITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDPTKFV 319

Query: 308 A 308
           A
Sbjct: 320 A 320


>gi|313676112|ref|YP_004054108.1| signal recognition particle-docking protein ftsy [Marivirga
           tractuosa DSM 4126]
 gi|312942810|gb|ADR22000.1| signal recognition particle-docking protein FtsY [Marivirga
           tractuosa DSM 4126]
          Length = 319

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/279 (42%), Positives = 173/279 (62%), Gaps = 8/279 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELI 92
           ++   ++D+ V +ELE++LI SD+GV    KI++ +  +R A+D  +     D  + E I
Sbjct: 34  VVGKSQVDEDVLDELEEILISSDLGVNTTVKIIDRI-EERVARDKYLGTSELDKILREEI 92

Query: 93  HKMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             +L   +     DFS      +P+V+LVVGVNGVGKTT IGKL+ +    G KV+L A 
Sbjct: 93  AALLSENNTEDLKDFSLPENIKKPYVLLVVGVNGVGKTTTIGKLAAQYKKQGKKVILGAA 152

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA+DQLK+W +R     V   + +D A++A++A KQ   ++ D++IIDTAGRLH 
Sbjct: 153 DTFRAAAVDQLKMWGERIEVPVVSHGMNTDPASVAFDAVKQGVQEEADIVIIDTAGRLHT 212

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
              LM  + K+ RV+++    APH VL VLD +TGQNA+ Q   F      T L +TK+D
Sbjct: 213 KVNLMNELSKIKRVIQKFVSEAPHEVLLVLDGSTGQNAMIQAREFTKATEVTALAITKLD 272

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GTA+GG +I I    KIPV ++GVGE + DL+ F   +F
Sbjct: 273 GTAKGGVVIGISEEFKIPVKYIGVGEKVEDLQVFNKMEF 311


>gi|237805173|ref|YP_002889327.1| Cell Division Protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273473|emb|CAX10389.1| Cell Division Protein [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 284

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 151/269 (56%), Gaps = 7/269 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97
           R L   + E  E LL   D G  + +   EEL   +   + +V+ ++   +S++I K+  
Sbjct: 15  RTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRQCKNPDERAVKELIRSFLSKIISKL-- 72

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P  +P     S RP   LV+G NG GKTT + KL+        KV++ A DTFRSA +DQ
Sbjct: 73  PQREPL----SVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLIVATDTFRSAGMDQ 128

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           ++ WA+  +  F+  + G DAAA+A++    A A+  D +IIDT+GRLH ++ L+  + K
Sbjct: 129 MRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRLHTHTNLLKELQK 188

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +  V  +  P APH  L  +DAT G N L QV++FH      GLI TK++G+A+GG L  
Sbjct: 189 IATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTKVEGSAKGGSLFR 248

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           I    KIP  F+G GE I+D EPF    F
Sbjct: 249 IADELKIPTRFVGYGETIHDFEPFAIDRF 277


>gi|118443376|ref|YP_878288.1| signal recognition particle-docking protein FtsY [Clostridium novyi
           NT]
 gi|118133832|gb|ABK60876.1| signal recognition particle-docking protein FtsY [Clostridium novyi
           NT]
          Length = 302

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/297 (40%), Positives = 190/297 (63%), Gaps = 5/297 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   KL  G + T     E ++++++ + ++D+ + EELE++LI +DIGV  +  ++E +
Sbjct: 4   NLFNKLKDGLSKTKNNFTEKVSEVLNLAVKIDEDLFEELEEILITADIGVDTSLDVIERV 63

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIG 129
             K   + ++  + +Y     + ++LM +    N +  +  P  +LV+GVNG GKTT IG
Sbjct: 64  RVKVKERRITDPKEVYTC---LKEVLMEILNEDNKEEENITPKTVLVIGVNGAGKTTSIG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+S ++ + G KV++AA DTFR+AAIDQL++W++R   D +  + GSD A++ ++A + A
Sbjct: 121 KMSHRLKEDGYKVLMAAADTFRAAAIDQLEVWSNRAGVDIIRHQEGSDPASVVFDAIQAA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI DTAGRLHN   LM  + K+ R++ R    +    L VLD TTGQNAL+Q 
Sbjct: 181 KARKTDVLICDTAGRLHNKKNLMNELEKINRIIDREYGESKKETLLVLDGTTGQNALQQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + F  V    G+++TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F A+ F
Sbjct: 241 KQFAEVCPIDGIVITKLDGTAKGGVIIAIKHQLNIPVKFIGVGEGIDDLQEFDAESF 297


>gi|269215482|ref|ZP_06159336.1| signal recognition particle-docking protein FtsY [Slackia exigua
           ATCC 700122]
 gi|269130969|gb|EEZ62044.1| signal recognition particle-docking protein FtsY [Slackia exigua
           ATCC 700122]
          Length = 304

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 174/308 (56%), Gaps = 13/308 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           ++W  ++  G + +  KL+E I  ++     +D+   E LE+ L+ SDIG   A KI  +
Sbjct: 1   MAWFDRMKSGLSKSREKLQESINMLVFKGPEVDEDFWENLEETLVMSDIGYPAAFKISVD 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-----NWDFSHRPHVILVVGVNGVGK 124
           +      +D + +R L D   ++ ++   +++ F           RP  +L+VGVNG GK
Sbjct: 61  M------RDAAQRRALPDAPAILEELSAQIARGFAVPEEGNPLDERPLCVLLVGVNGSGK 114

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GK++ +    G  V+L A DTFR+AAI+QL+ WA R+    V  E GSD A++ YE
Sbjct: 115 TTTAGKMAAEAKGRGDTVVLGAADTFRAAAIEQLEEWARRSDVPIVERERGSDPASVCYE 174

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+    D+ +IDTAGRLH +  LM  + K+  V+++       +VL V+DAT GQN
Sbjct: 175 TLDEAERIGADLALIDTAGRLHTSPDLMRELQKVTSVVRKRCAWRVVTVL-VIDATAGQN 233

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q + F       G++MTK+DGTA+GG  + I     +P+  +GVGEGI+DL  F A 
Sbjct: 234 GLTQAKRFDEALDLDGIVMTKLDGTAKGGIALAISYELGLPILKIGVGEGIDDLRDFDAL 293

Query: 305 DFSAVITG 312
           D++  +TG
Sbjct: 294 DYARALTG 301


>gi|58337571|ref|YP_194156.1| cell division protein [Lactobacillus acidophilus NCFM]
 gi|227904213|ref|ZP_04022018.1| signal recognition particle docking protein FtsY [Lactobacillus
           acidophilus ATCC 4796]
 gi|58254888|gb|AAV43125.1| cell division protein [Lactobacillus acidophilus NCFM]
 gi|227868232|gb|EEJ75653.1| signal recognition particle docking protein FtsY [Lactobacillus
           acidophilus ATCC 4796]
          Length = 431

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 101/259 (38%), Positives = 153/259 (59%), Gaps = 5/259 (1%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           I SD+G   A+++ EEL     L    ++D   Q ++  + +L  K      +   ++  
Sbjct: 165 IESDVGYETAEQLTEELREEAKLQNAKSRDELKQVIVEKLVDLYDKGGNNKDEKLEYNSD 224

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P+V L VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL  W  R    
Sbjct: 225 DKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVP 284

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V  +  +D A++ Y+A ++A  +KVD L++DTAGRL N   LMA + K+ R +++L P 
Sbjct: 285 VVTGKEKADPASVVYDATERAIKEKVDYLLVDTAGRLQNKKNLMAELEKIQRTIQKLLPD 344

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  
Sbjct: 345 QPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVKL 404

Query: 289 LGVGEGINDLEPFVAKDFS 307
           +G+GE   DL  F A +++
Sbjct: 405 VGLGEKPEDLADFDAANYA 423


>gi|319956140|ref|YP_004167403.1| signal recognition particle-docking protein ftsy [Nitratifractor
           salsuginis DSM 16511]
 gi|319418544|gb|ADV45654.1| signal recognition particle-docking protein FtsY [Nitratifractor
           salsuginis DSM 16511]
          Length = 291

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 104/294 (35%), Positives = 166/294 (56%), Gaps = 15/294 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L K F  T+    E I +++  ++     +EE E++L+ +D+   + ++++E L      
Sbjct: 5   LKKAFGKTN----EAIREVLPEKKTKIS-KEEFEEILLEADVDYELIERLLESL--PETI 57

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
             +     L  V +   + + P         ++ P V +++GVNG GKTT I KL+++  
Sbjct: 58  TRIQAYNSLISVFQYRAEWIDP--------NAYHPFVEMIIGVNGAGKTTTIAKLARRYQ 109

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             G  V+L AGDTFR+AAI+QL  WA++     V +  G D +A+ ++  + A AK VD 
Sbjct: 110 KEGKSVILGAGDTFRAAAIEQLSRWAEKLQVPIVATRQGHDPSAVVFDTIRSALAKGVDR 169

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +IIDTAGRLH  + L   + KM+RV  +  P APH  + +LD T G + + Q + F A+ 
Sbjct: 170 VIIDTAGRLHTQTNLAEELKKMVRVADKALPGAPHRKMLILDGTQGSSTVNQAKAFDAMI 229

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           G  G+I+TK+DGTA+GG ++ I    K+P+YF+G GE   DL PF A ++   I
Sbjct: 230 GIDGIIITKLDGTAKGGSVLSIADQLKMPIYFIGTGEQPEDLIPFKANEYVNTI 283


>gi|253682407|ref|ZP_04863204.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum D str. 1873]
 gi|253562119|gb|EES91571.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum D str. 1873]
          Length = 304

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 121/296 (40%), Positives = 187/296 (63%), Gaps = 1/296 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   KL  G A T     E +++++  + ++D+ + EELE++LI +DIGV  + ++++ +
Sbjct: 4   NLFNKLKDGLAKTKNNFTEKVSEVLKLAVKIDEELFEELEEILITADIGVDTSLEVIDRV 63

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K   K ++  + +YD  + +   ++        +    P  ILV+GVNG GKTT IGK
Sbjct: 64  KDKVKEKRITDPKEVYDCLKEVLIEILTEENENKKEEESIPKTILVIGVNGAGKTTSIGK 123

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +S K+ + G KV++AA DTFR+AAIDQL++W++R   D +  + GSD A++ ++A + ++
Sbjct: 124 MSNKLKNQGHKVIMAAADTFRAAAIDQLEVWSNRAGVDIIRHQEGSDPASVVFDAIQASK 183

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K DVLI DTAGRLHN   LM  + K+ R++ R    A    L VLD TTGQNAL+Q +
Sbjct: 184 ARKADVLICDTAGRLHNKKNLMNELEKINRIIDREYSEANKQTLLVLDGTTGQNALQQAK 243

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F  V    G+++TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F A+ F
Sbjct: 244 QFAEVCPIDGIVITKLDGTAKGGVIIAIKHQLHIPVKFIGVGEGIDDLQEFNAESF 299


>gi|166154164|ref|YP_001654282.1| cell division protein [Chlamydia trachomatis 434/Bu]
 gi|166155039|ref|YP_001653294.1| cell division protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335408|ref|ZP_07223652.1| cell division protein [Chlamydia trachomatis L2tet1]
 gi|165930152|emb|CAP03636.1| Cell Division Protein [Chlamydia trachomatis 434/Bu]
 gi|165931027|emb|CAP06590.1| Cell Division Protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 284

 Score =  188 bits (478), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 151/269 (56%), Gaps = 7/269 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97
           R L   + E  E LL   D G  + +   EEL   +   + +V+ ++   +S++I K+  
Sbjct: 15  RTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRRCKNPDERAVKELIRSFLSKIISKL-- 72

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P  +P     S RP   LV+G NG GKTT + KL+        KV++ A DTFRSA +DQ
Sbjct: 73  PQREPL----SVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLIVATDTFRSAGMDQ 128

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           ++ WA+  +  F+  + G DAAA+A++    A A+  D +IIDT+GRLH ++ L+  + K
Sbjct: 129 MRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRLHTHTNLLKELQK 188

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +  V  +  P APH  L  +DAT G N L QV++FH      GLI TK++G+A+GG L  
Sbjct: 189 IATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTKVEGSAKGGSLFR 248

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           I    KIP  F+G GE I+D EPF    F
Sbjct: 249 IADELKIPTRFVGYGETIHDFEPFAIDRF 277


>gi|163847286|ref|YP_001635330.1| signal recognition particle-docking protein FtsY [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525130|ref|YP_002569601.1| signal recognition particle-docking protein FtsY [Chloroflexus sp.
           Y-400-fl]
 gi|163668575|gb|ABY34941.1| signal recognition particle-docking protein FtsY [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449009|gb|ACM53275.1| signal recognition particle-docking protein FtsY [Chloroflexus sp.
           Y-400-fl]
          Length = 325

 Score =  188 bits (478), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 111/267 (41%), Positives = 160/267 (59%), Gaps = 6/267 (2%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           D + +ELE+ LI++D+G+   Q +V   + +     V   R   +  E++   ++     
Sbjct: 53  DELWDELEEALIQADVGLETTQYLVNRTIDRVNRHGVKKAR---EAREMLKAEMVRTFAE 109

Query: 103 F--NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLK 159
           +      + RP+VILVVGVNG GKTT+I KL+ +  +  G KV+LAAGDTFR+AA +QL+
Sbjct: 110 YAGQQRPNARPYVILVVGVNGAGKTTLIAKLAHRYKNRFGKKVLLAAGDTFRAAATEQLE 169

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            WA+R     V    G+DAAA+ Y+A   A  + VDVLIIDTAGRLH    LM  + K+ 
Sbjct: 170 TWAERAGVPCVSLGQGADAAAVVYKAIDAALEQDVDVLIIDTAGRLHAKYNLMQELEKIR 229

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            ++ R  P APH  + V+DATTGQN + Q + F   AG T + +TKMDGTA+GG    I 
Sbjct: 230 NIIGRKLPGAPHETILVIDATTGQNGVLQAKAFLKAAGVTDVAITKMDGTAKGGIAFAIA 289

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + P+ ++G GE ++DL  F A+ F
Sbjct: 290 QDIERPIRYIGTGEKMDDLALFDAQTF 316


>gi|148272542|ref|YP_001222103.1| Signal recognition particle component [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830472|emb|CAN01407.1| Signal recognition particle component [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 291

 Score =  188 bits (478), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 169/297 (56%), Gaps = 14/297 (4%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAK 77
           A T   L   +  + +   +D+   ++LE  LI +D G  V +  +++L  K    R   
Sbjct: 3   ARTPWSLSGALRGMFAKPTIDETTWDDLETALITADFGPDVTEATIDDLRQKVERYRTTD 62

Query: 78  DVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
              +QR+L + + E + K    L        S RP VILVVGVNGVGKTT IGK +K + 
Sbjct: 63  PRDLQRMLRESIEERLAKHDPTLK------LSARPAVILVVGVNGVGKTTTIGKFAKFLR 116

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVD 195
           + G  V++ A DTFR+AA+DQL  WADR  A+ V   + G D A++A++  + A     +
Sbjct: 117 NYGRTVVVGAADTFRAAAVDQLATWADRAGAEIVRPQQPGQDPASVAFQTVEHAMRTGTE 176

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++IIDTAGRLH    LM  + K+ RV+++  P A   VL VLDATTGQN L Q + F   
Sbjct: 177 MVIIDTAGRLHTKGGLMDELSKIRRVVEKQSPIA--EVLLVLDATTGQNGLAQAQAFIEH 234

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            G TGL++TK+DG+A+GG ++ +     IP+  +G GEGI DL  F    F+  + G
Sbjct: 235 GGVTGLVITKLDGSAKGGFILNVQERTGIPIKLIGQGEGIGDLTGFTPHVFAQNLVG 291


>gi|206602219|gb|EDZ38701.1| Cell division protein (FtsY) [Leptospirillum sp. Group II '5-way
           CG']
          Length = 309

 Score =  188 bits (478), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 115/294 (39%), Positives = 169/294 (57%), Gaps = 12/294 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT- 72
           +++L  G   T  KL   +  +    R      EELEDLLI SD+G   A  ++ +L   
Sbjct: 4   LQRLGAGLKKTREKLGNNLAQLFGKER-SPQFYEELEDLLIISDVGPEQASLLIRDLKEW 62

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-----NWDFSHRPHVILVVGVNGVGKTTV 127
           ++ + + +    L  + E I     PL+ P      +W    +P VIL+VGVNGVGKTT 
Sbjct: 63  EKTSGNGTKGDPLLFLEERIASFF-PLNPPVWVEQPDW----KPVVILMVGVNGVGKTTT 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+ +    G  V+L A DTFR+AA+ QL++W ++     V  + G+D AA+A++  K
Sbjct: 118 TGKLAHRFQQEGKSVILGAADTFRAAAVQQLRLWGEKLEIPVVHQKEGADPAAVAFDTVK 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A+K+DV IIDTAGRL     LMA +GK+  ++KR     P   L VLD+T GQN + 
Sbjct: 178 AALARKMDVAIIDTAGRLQTKHNLMAELGKIHGLVKREMEDRPFETLIVLDSTLGQNTVS 237

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           Q+E F      +G+I+TK+DGT++GG ++ +     +PV F+GVGEG +DL  F
Sbjct: 238 QMEHFRKAIPVSGMILTKLDGTSKGGIVVSLARKFHLPVRFVGVGEGKDDLVEF 291


>gi|218132446|ref|ZP_03461250.1| hypothetical protein BACPEC_00305 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992556|gb|EEC58558.1| hypothetical protein BACPEC_00305 [Bacteroides pectinophilus ATCC
           43243]
          Length = 309

 Score =  188 bits (478), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 130/305 (42%), Positives = 182/305 (59%), Gaps = 10/305 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    KL +G   T   +  G+  I S    +DD   EELE+ +I  DIGV   ++I+EE
Sbjct: 1   MGLFSKLKEGLTKTRDHITSGMDAIFSGFSSIDDDFYEELEETMIMGDIGVCATEEILEE 60

Query: 70  LLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           L  + +   V      +++L D      K  M L +   +DF +R  +I+++GVNGVGKT
Sbjct: 61  LKERVHENKVKNPADCKQLLIDTI----KEKMDLGEN-AYDFENRKSIIILIGVNGVGKT 115

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T  GK++  +   G KV+LAA DTFR+AAI+QL  WA+R+  D +    GSD AA+ ++A
Sbjct: 116 TSAGKIAAHLRGQGRKVILAAADTFRAAAIEQLTEWANRSQCDIIAQSEGSDPAAVIFDA 175

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K DVL+ DTAGRLHN   LM  + K+ RV++R    A    L VLDATTGQNA
Sbjct: 176 VAAAKARKADVLLCDTAGRLHNKKNLMEELRKIDRVIEREYADAYRENLLVLDATTGQNA 235

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q+  F  V   TG+I+TKMDGTA+GG  I I     +PV ++GVGE I DL+ F ++D
Sbjct: 236 LSQLREFKDVMDITGIILTKMDGTAKGGIAIAIQTEFGVPVKYIGVGEHIEDLQKFNSED 295

Query: 306 FSAVI 310
           +   I
Sbjct: 296 YVNAI 300


>gi|291522185|emb|CBK80478.1| signal recognition particle-docking protein FtsY [Coprococcus catus
           GD/7]
          Length = 312

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/300 (41%), Positives = 181/300 (60%), Gaps = 8/300 (2%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++ E   +  +L +G   T   +  G   I S    +D+   EELE++L+ +D+G+   +
Sbjct: 1   MSEEKKGFFSRLVEGLTKTRNNIMSGFDAIFSGFSNIDEDFYEELEEVLVMADLGIHTTE 60

Query: 65  KIVEELLTKRYAKDVSV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            I+EEL  KR  K+  +   Q     +++ I + +    + +   F H+  V+LV+GVNG
Sbjct: 61  NIIEEL--KRKVKEQHIKEPQACKQLLADTIKEQMRVDEEAYQ--FEHQTSVVLVIGVNG 116

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ +   AG KV+LAA DTFR+AAI+QL  WA R   D +  + GSD A++
Sbjct: 117 VGKTTTIGKLAGQYKKAGKKVVLAAADTFRAAAIEQLTEWAHRAGVDIIAGQEGSDPASV 176

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A   A+A+K D+L+ DTAGRLHN   LM  + K+ R+++R  P A    L VLD TT
Sbjct: 177 IYDAIAAAKARKADILLCDTAGRLHNKKNLMEELKKINRIIEREYPEAYRENLIVLDGTT 236

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + F   A  TG+++TK+DGTA+GG  I I     +PV ++G+GE I DL+ F
Sbjct: 237 GQNALVQAKQFKETADITGIVLTKLDGTAKGGIAIAIQAELGVPVKYIGIGEKIEDLQKF 296


>gi|300814487|ref|ZP_07094748.1| signal recognition particle-docking protein FtsY [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|300511405|gb|EFK38644.1| signal recognition particle-docking protein FtsY [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 421

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/262 (42%), Positives = 161/262 (61%), Gaps = 3/262 (1%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-R 110
           +LI +D+G+    K+++ L      + ++    + D+ +   K LM  ++  N   S   
Sbjct: 162 ILISADVGMDTTMKLIDNLRETIIKEKINDPSKVKDILKSETKKLM--NEELNKGISDVS 219

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P +ILVVGVNGVGKTT IGKL+K+  D G  V++AA DTFR+AAIDQLK W  R + D +
Sbjct: 220 PSIILVVGVNGVGKTTTIGKLAKRYKDEGKSVLIAAADTFRAAAIDQLKEWGSRVNVDII 279

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G D AA+ ++A   A+++  D+LI+DTAGRLHN + LM  + K+ R++ +  P A 
Sbjct: 280 SHSEGQDPAAVVFDAITAAKSRNADILIVDTAGRLHNKANLMKELEKINRIIDKKYPEAY 339

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VLDATTGQNA+ Q + F      TG+ +TK+DGTA+GG +I +    +IP+  +G
Sbjct: 340 RETLLVLDATTGQNAMNQAKTFKEAVNITGIALTKLDGTAKGGVVIALQSELQIPIKLVG 399

Query: 291 VGEGINDLEPFVAKDFSAVITG 312
           VGEGI DL+ F   +F   I G
Sbjct: 400 VGEGIYDLQDFNLDNFLQGIFG 421


>gi|121603800|ref|YP_981129.1| signal recognition particle-docking protein FtsY [Polaromonas
           naphthalenivorans CJ2]
 gi|120592769|gb|ABM36208.1| signal recognition particle-docking protein FtsY [Polaromonas
           naphthalenivorans CJ2]
          Length = 390

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/321 (38%), Positives = 188/321 (58%), Gaps = 28/321 (8%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E   W  KL +G   T       I+ + +  ++D+ + E+LE  L+ +D GV+  + ++ 
Sbjct: 81  ERQRWFGKLQEGLRKTG----SSISTVFTGSQIDEQLYEDLETALLMADTGVSATEHLLA 136

Query: 69  ELLTKRYAKD------VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           ++  +R  KD      V+V+  L    E I  +L PL +P        P VI+V GVNG 
Sbjct: 137 DV--RRRVKDGGMTHPVAVRNALI---ESITVLLKPLERPLVIG-EFVPTVIMVTGVNGA 190

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++ +++ G  V+LAA DTFR+AA +QL +WADR + + V  E G D AA++
Sbjct: 191 GKTTSIGKLTRHLANEGASVLLAAADTFRAAAREQLSVWADRNTVEIVSQENG-DPAAVS 249

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A    +A+  DV+++DTAGRL     LM  + K+ RV+++ D  APH VL V+D  TG
Sbjct: 250 FDAVTAGKARGKDVVLVDTAGRLPTQLHLMEELRKIKRVVQKADATAPHEVLLVIDGNTG 309

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK-----------IPVYFLGV 291
           QNAL QV+ F      TGL++TK+DGTA+GG L  I +  +           + VYF+GV
Sbjct: 310 QNALAQVKAFDDTLQLTGLVVTKLDGTAKGGVLAAIALWARERAKASPGLRPVAVYFIGV 369

Query: 292 GEGINDLEPFVAKDFSAVITG 312
           GE + DLE F A++F+  + G
Sbjct: 370 GEKLEDLETFNAREFAQALLG 390


>gi|95929906|ref|ZP_01312647.1| signal recognition particle-docking protein FtsY [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134202|gb|EAT15860.1| signal recognition particle-docking protein FtsY [Desulfuromonas
           acetoxidans DSM 684]
          Length = 429

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/304 (41%), Positives = 185/304 (60%), Gaps = 3/304 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVA 63
           +   E +S   ++  G + TS  L   I  + + +  ++  V EELE++LI +D G+   
Sbjct: 119 EAPPEPVSLYDRMRSGLSKTSSALIGRIDSLFTGASTVNQDVIEELEEILITADFGMKTT 178

Query: 64  QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           Q +V+    + +  K+    ++   + + I ++L   ++P   D  H P V++V+GVNGV
Sbjct: 179 QMLVDGFQQRAKELKETDADQLRDLLKDEIRRLLDVNAEPLALD-RHSPFVLMVIGVNGV 237

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++ S  G KV+L A DTFR+AA DQL++W +R+    +  + G+D AA+A
Sbjct: 238 GKTTTIGKLAQQFSSQGKKVVLGAADTFRAAAADQLEVWGERSGVKVIRHDEGADPAAVA 297

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K A A+  D+LI+DTAGRLH    LM  + K+ RVL R    APH  L VLDATTG
Sbjct: 298 FDAAKAAVARNADILILDTAGRLHTKVNLMEEMKKLYRVLGREIGDAPHETLLVLDATTG 357

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q  +F    G TG+ +TK+DGTA+GG  + I     +PV F+GVGEGI DL PF 
Sbjct: 358 QNALVQARLFKEAVGVTGIALTKLDGTAKGGMAVAIGAELGLPVRFVGVGEGIEDLRPFD 417

Query: 303 AKDF 306
            + F
Sbjct: 418 PQMF 421


>gi|116495087|ref|YP_806821.1| Signal recognition particle GTPase [Lactobacillus casei ATCC 334]
 gi|227534898|ref|ZP_03964947.1| signal recognition particle docking protein FtsY [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|116105237|gb|ABJ70379.1| signal recognition particle-docking protein FtsY [Lactobacillus
           casei ATCC 334]
 gi|227187654|gb|EEI67721.1| signal recognition particle docking protein FtsY [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 331

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 174/305 (57%), Gaps = 17/305 (5%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +G   +     E +  + ++ R +D+   + LE++LI SD+G   A K+ ++L  +
Sbjct: 22  NKYDEGLEKSRSSFGEKLNALFANFRSVDEDFFDNLEEMLIESDVGFETAVKLSDDLREE 81

Query: 74  ---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHR-PHVILVVGVNGVG 123
              + AKD         VS +I + L+ +      D      F+   P V L VGVNG G
Sbjct: 82  VKLKNAKDPKA------VSRVIVEKLVDMYGDAGKDEDNALHFAESGPSVFLFVGVNGAG 135

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ ++ + G +V+L A DTFR+ AI QL+ W  R     V ++ G D AA+ +
Sbjct: 136 KTTTVGKLAHQLKEEGKRVLLVAADTFRAGAIQQLQEWGRRVDVPVVATKEGGDPAAVVF 195

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  K+A+ ++ DV+++DTAGRL N   LM  + K+ RV+ R  P AP  VL VLDATTGQ
Sbjct: 196 DGVKRAKDEQFDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQ 255

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F+     TG+++TK+DG+ +GG ++ I     +PV  +G+GE ++DL+ F  
Sbjct: 256 NALNQAKEFNQTTKITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDP 315

Query: 304 KDFSA 308
             F A
Sbjct: 316 TKFVA 320


>gi|67925131|ref|ZP_00518505.1| Cell division transporter substrate-binding protein FtsY
           [Crocosphaera watsonii WH 8501]
 gi|67853025|gb|EAM48410.1| Cell division transporter substrate-binding protein FtsY
           [Crocosphaera watsonii WH 8501]
          Length = 457

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 181/306 (59%), Gaps = 5/306 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V+ E ++W+++L +G   + L L   +  I+    L++    E+E LL+++D G+     
Sbjct: 145 VSQEEINWLKRLRQGLGKSRLGLVNQLKSIVGQGPLNEDAVMEIEALLLQADTGLEATDY 204

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVI---LVVGVNG 121
           I+  L  K   + +  ++ L  +  ++ ++L  PL K  N  F+    V+   L+ GVNG
Sbjct: 205 IISTLQNKLLEEALPPEQALEYLKSILREILDRPLQKVVNPGFAPEKDVLNIWLLTGVNG 264

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT IGKLS     +G   ++AA DTFR+AA+ Q+++W +RT+   + +    +D AA
Sbjct: 265 AGKTTTIGKLSHLAQQSGYNCIIAAADTFRAAAVQQVQVWGERTNTPVIANPGKNTDPAA 324

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++    AQA++ D+L++DTAGRL N   LMA + K+ R++ +    A    L VLDAT
Sbjct: 325 VVFDGISAAQARQADLLLVDTAGRLQNKKNLMAELAKIRRIIDKKAEKAQVESLLVLDAT 384

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQN LRQ ++F   A  +G+++TK+DG+A+GG  + +     +P+ F+GVGEGI DL P
Sbjct: 385 LGQNGLRQAQVFSEAANLSGVVLTKLDGSAKGGVALAVAKQLDLPIRFIGVGEGIEDLRP 444

Query: 301 FVAKDF 306
           F + +F
Sbjct: 445 FSSYEF 450


>gi|191638591|ref|YP_001987757.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           casei BL23]
 gi|190712893|emb|CAQ66899.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           casei BL23]
 gi|327382633|gb|AEA54109.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           casei LC2W]
 gi|327385827|gb|AEA57301.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           casei BD-II]
          Length = 331

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 173/302 (57%), Gaps = 11/302 (3%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +G   +     E +  + ++ R +D+   + LE++LI SD+G   A K+ ++L  +
Sbjct: 22  NKYDEGLEKSRSSFGEKLNALFANFRSVDEDFFDNLEEMLIESDVGFETAVKLSDDLREE 81

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHR-PHVILVVGVNGVGKTT 126
              K+    +    VS +I + L+ +      D      F+   P V L VGVNG GKTT
Sbjct: 82  VKLKNAKDPKA---VSHVIVEKLVDMYGDAGKDEDNALHFAESGPSVFLFVGVNGAGKTT 138

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL+ ++ + G +V+L A DTFR+ AI QL+ W  R     V ++ G D AA+ ++  
Sbjct: 139 TVGKLAHQLKEEGKRVLLVAADTFRAGAIQQLQEWGRRVDVPVVATKEGGDPAAVVFDGV 198

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K+A+ ++ DV+++DTAGRL N   LM  + K+ RV+ R  P AP  VL VLDATTGQNAL
Sbjct: 199 KRAKDEQFDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQNAL 258

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F+     TG+++TK+DG+ +GG ++ I     +PV  +G+GE ++DL+ F    F
Sbjct: 259 NQAKEFNQTTKITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDPTKF 318

Query: 307 SA 308
            A
Sbjct: 319 VA 320


>gi|149924993|ref|ZP_01913317.1| signal recognition particle-docking protein FtsY [Plesiocystis
           pacifica SIR-1]
 gi|149814140|gb|EDM73759.1| signal recognition particle-docking protein FtsY [Plesiocystis
           pacifica SIR-1]
          Length = 592

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 179/301 (59%), Gaps = 12/301 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           K  +GF +   +L +G        ++ D +++++E++L  +DIG   A+ ++E + ++  
Sbjct: 286 KTKRGFIAKLARLFKG------KPKVSDDLKDDIEEVLFTADIGARTAETLLESVTSELD 339

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K+V+    +++V       ++ +  P  ++     P+V+L++GVNGVGKTT +GKL+ +
Sbjct: 340 KKEVADPDAVWEVIRRKALDILDIDAPEIDYTPDPGPYVLLMIGVNGVGKTTTLGKLAAR 399

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             +AG K +L AGDTFR+AA +QL++WA R   D    +  +D +++ ++   + + +  
Sbjct: 400 HVEAGRKTLLVAGDTFRAAAGEQLEVWARRVGCDIHLGKENADPSSVLFDGITRGRDEGY 459

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVL-----KRLDPHAPHSVLQVLDATTGQNALRQV 249
           D+++ DTAGRLH    LMA + KM R       K  D   PH +  VLDAT GQNAL Q 
Sbjct: 460 DIVLCDTAGRLHTRKELMAELAKMGRAATKALSKGRDEVEPHDIFLVLDATIGQNALAQA 519

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           +MF      +GL++TK+DGTA+GG ++ +V   KIP+ ++GVGE ++DL  F  + +  V
Sbjct: 520 QMFKETMAFSGLVLTKLDGTAKGGVVLGVVDELKIPIRYIGVGEAVDDLRRFDPEAYCEV 579

Query: 310 I 310
           +
Sbjct: 580 L 580


>gi|169335336|ref|ZP_02862529.1| hypothetical protein ANASTE_01748 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258074|gb|EDS72040.1| hypothetical protein ANASTE_01748 [Anaerofustis stercorihominis DSM
           17244]
          Length = 298

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/299 (38%), Positives = 175/299 (58%), Gaps = 8/299 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            K  KG   T   L   + D+ SS ++DD + EEL ++LI SDI   V+++I+E +    
Sbjct: 4   EKYNKGLDKTKKSLLSKLKDVFSSNKIDDDLYEELIEVLILSDIPFNVSEEIIENVKENA 63

Query: 75  YAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKL 131
             KDV     LYD+   E+ +++ + L     WD    +P +IL +GVNG GKTT I KL
Sbjct: 64  TKKDVKDINKLYDLIKDEIRNRLNLNL-----WDKEIKKPALILFIGVNGAGKTTTIAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K      KV+LAA DTFR+AA +QL  WA+R +   V S  G D A++ Y+    A+A
Sbjct: 119 ANKFLKEDKKVILAAADTFRAAASEQLATWAERLNVPIVKSSQGQDPASVIYDCLDSAKA 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D+++ D+AGRL N   LM  + K+ RV  +         + VLDA  GQN++ Q E 
Sbjct: 179 KDMDIILADSAGRLQNKKNLMDELNKIYRVCDKFKGDYNLYTVLVLDAGAGQNSVIQAES 238

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           F+  A   G+IMTK+DG+A+GG ++ +   +K P++++G+GEG++DLE F   +F   I
Sbjct: 239 FNESAKVDGIIMTKLDGSAKGGVIVSLAGDNKPPMWYIGLGEGLDDLEEFDVDNFVDAI 297


>gi|327183816|gb|AEA32263.1| signal recognition particle-docking protein FtsY [Lactobacillus
           amylovorus GRL 1118]
          Length = 439

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 154/259 (59%), Gaps = 5/259 (1%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           I SD+G   A+++ +EL     L    ++D   Q ++  + +L  +      +   +D  
Sbjct: 173 IESDVGFETAEQLTDELREEAKLQNAKSRDDLKQVIVEKLVDLYDQGGQGKDEKLAYDPD 232

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P+V L VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL+ W  R    
Sbjct: 233 AKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLEEWGKRVGVP 292

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V  +  +D A++ Y+A ++A  ++ D L++DTAGRL N   LMA + K+ R +K+L P 
Sbjct: 293 VVTGKEKADPASVVYDATERAIKEQADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPE 352

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I    K+PV  
Sbjct: 353 QPAETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMKLPVKL 412

Query: 289 LGVGEGINDLEPFVAKDFS 307
           +G+GE   DL  F A +++
Sbjct: 413 VGLGEKAEDLADFDAANYA 431


>gi|325957093|ref|YP_004292505.1| signal recognition particle-docking protein FtsY [Lactobacillus
           acidophilus 30SC]
 gi|325333658|gb|ADZ07566.1| signal recognition particle-docking protein FtsY [Lactobacillus
           acidophilus 30SC]
          Length = 439

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 154/259 (59%), Gaps = 5/259 (1%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           I SD+G   A+++ +EL     L    ++D   Q ++  + +L  +      +   +D  
Sbjct: 173 IESDVGFETAEQLTDELREEAKLQNAKSRDDLKQVIVEKLVDLYDQGGQGKDEKLAYDPD 232

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P+V L VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL+ W  R    
Sbjct: 233 AKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLEEWGKRVGVP 292

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V  +  +D A++ Y+A ++A  ++ D L++DTAGRL N   LMA + K+ R +K+L P 
Sbjct: 293 VVTGKEKADPASVVYDATERAIKEQADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPE 352

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I    K+PV  
Sbjct: 353 QPAETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMKLPVKL 412

Query: 289 LGVGEGINDLEPFVAKDFS 307
           +G+GE   DL  F A +++
Sbjct: 413 VGLGEKAEDLADFDAANYA 431


>gi|296436375|gb|ADH18549.1| Cell Division Protein [Chlamydia trachomatis G/9768]
 gi|296438234|gb|ADH20395.1| Cell Division Protein [Chlamydia trachomatis G/11074]
 gi|297140735|gb|ADH97493.1| Cell Division Protein [Chlamydia trachomatis G/9301]
          Length = 284

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/269 (38%), Positives = 151/269 (56%), Gaps = 7/269 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97
           + L   + E  E LL   D G  + +   EEL   +   + +V+ ++   +S++I K+  
Sbjct: 15  KTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRRCKNPDERAVKELIRSFLSKIISKL-- 72

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P  +P     S RP   LV+G NG GKTT + KL+        KV++ A DTFRSA +DQ
Sbjct: 73  PQREPL----SVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLIVATDTFRSAGMDQ 128

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           ++ WA+  +  F+  + G DAAA+A++    A A+  D +IIDT+GRLH ++ L+  + K
Sbjct: 129 MRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRLHTHTNLLKELQK 188

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +  V  +  P APH  L  +DAT G N L QV++FH      GLI TK++G+A+GG L  
Sbjct: 189 IANVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTKVEGSAKGGSLFR 248

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           I    KIP  F+G GE I+D EPF    F
Sbjct: 249 IADELKIPTRFVGYGETIHDFEPFAIDRF 277


>gi|323466307|gb|ADX69994.1| Cell division protein [Lactobacillus helveticus H10]
          Length = 272

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/266 (38%), Positives = 158/266 (59%), Gaps = 9/266 (3%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN---- 104
           +EDLLI SD+G   A+++++EL  +   ++   +  L  V  ++ K++    K  N    
Sbjct: 1   MEDLLIESDVGYETAEQLIDELREEAKLQNAKSRDDLKKV--IVEKLVDLYDKDGNSEDE 58

Query: 105 ---WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
              +    +P+V L VGVNG GKTT IGKL+K+  D G  V++AA DTFR+ A++QL  W
Sbjct: 59  KLIYHPEDKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVIMAAADTFRAGAVEQLVEW 118

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             R     V  +  +D A++ Y+A ++A  +  D L++DTAGRL N   LMA + K+ R+
Sbjct: 119 GKRVDVPVVTGKEKADPASVVYDATERAIKENADYLLVDTAGRLQNKKNLMAELEKIQRI 178

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +K+L P  P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I   
Sbjct: 179 IKKLLPDQPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNE 238

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFS 307
             +PV  +G+GE   DL  F A +++
Sbjct: 239 MNLPVKLVGLGEKAEDLADFDAANYA 264


>gi|239631965|ref|ZP_04674996.1| signal recognition particle-docking protein FtsY [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301066651|ref|YP_003788674.1| signal recognition particle GTPase [Lactobacillus casei str. Zhang]
 gi|239526430|gb|EEQ65431.1| signal recognition particle-docking protein FtsY [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300439058|gb|ADK18824.1| Signal recognition particle GTPase [Lactobacillus casei str. Zhang]
          Length = 331

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 173/301 (57%), Gaps = 11/301 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           K  +G   +     E +  + ++ R +D+   + LE++LI SD+G   A K+ ++L  + 
Sbjct: 23  KYDEGLEKSRSSFGEKLNALFANFRSVDEDFFDNLEEMLIESDVGFETAVKLSDDLREEV 82

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHR-PHVILVVGVNGVGKTTV 127
             K+    +    VS +I + L+ +      D      F+   P V L VGVNG GKTT 
Sbjct: 83  KLKNAKDPKA---VSRVIVEKLVDMYGDAGKDEDNALHFAESGPSVFLFVGVNGAGKTTT 139

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +GKL+ ++ + G +V+L A DTFR+ AI QL+ W  R     V ++ G D AA+ ++  K
Sbjct: 140 VGKLAHQLREEGKRVLLVAADTFRAGAIQQLQEWGRRVDVPVVATKEGGDPAAVVFDGVK 199

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+ ++ DV+++DTAGRL N   LM  + K+ RV+ R  P AP  VL VLDATTGQNAL 
Sbjct: 200 RAKDEQFDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQNALN 259

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+     TG+++TK+DG+ +GG ++ I     +PV  +G+GE ++DL+ F    F 
Sbjct: 260 QAKEFNQTTKITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDPTKFV 319

Query: 308 A 308
           A
Sbjct: 320 A 320


>gi|330443811|ref|YP_004376797.1| signal recognition particle-docking protein FtsY [Chlamydophila
           pecorum E58]
 gi|328806921|gb|AEB41094.1| signal recognition particle-docking protein FtsY [Chlamydophila
           pecorum E58]
          Length = 286

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/258 (39%), Positives = 150/258 (58%), Gaps = 11/258 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKML--MPLSKPF 103
           E  E L   +D G     ++ EEL ++ R AK+     +   +  L+ + L  +PLS+P 
Sbjct: 23  EYAEKLFYEADFG----SELTEELCSRLRKAKNPDKATIKELIIALLRETLQQLPLSRPV 78

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
               S  P V L++G NG GKTT + KL+        KV++ A DTFR+A IDQ++ WA+
Sbjct: 79  ----SSSPQVFLILGSNGSGKTTTVAKLAHFYQKQSQKVLIVATDTFRAAGIDQMRCWAE 134

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           + +  FV  + G D AA+AY+  + A A+  D +IIDT+GRLH ++ LM  + K++ V  
Sbjct: 135 KLNCGFVSGKSGGDPAAIAYDGIQAAIARDCDKVIIDTSGRLHTHTNLMKELSKIVTVCN 194

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           +  P APH +L  LDAT G N L Q + F ++A  +G+I+TK DG+A+GG L  I    K
Sbjct: 195 KALPGAPHEILMTLDATLGGNTLEQTQAFLSIAPVSGIILTKADGSAKGGTLFRIAKCLK 254

Query: 284 IPVYFLGVGEGINDLEPF 301
           IP  F+G GE + D + F
Sbjct: 255 IPTNFIGYGESMEDFQEF 272


>gi|229552450|ref|ZP_04441175.1| signal recognition particle docking protein FtsY [Lactobacillus
           rhamnosus LMS2-1]
 gi|258539821|ref|YP_003174320.1| cell division protein signal recognition particle FtsY
           [Lactobacillus rhamnosus Lc 705]
 gi|229314187|gb|EEN80160.1| signal recognition particle docking protein FtsY [Lactobacillus
           rhamnosus LMS2-1]
 gi|257151497|emb|CAR90469.1| cell division protein, signal recognition particle FtsY
           [Lactobacillus rhamnosus Lc 705]
          Length = 331

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 174/301 (57%), Gaps = 11/301 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK- 73
           K  +G   +     E +  + ++ R +D+   ++LE++LI SD+G   A ++ +EL  + 
Sbjct: 23  KYDEGLEKSRSSFGEKLNALFANFRTVDEDFFDDLEEMLIESDVGFETAVRLSDELREEV 82

Query: 74  --RYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTV 127
             + AKD  +V RV+  V +L+  M     K  +         P V L VGVNG GKTT 
Sbjct: 83  KLKNAKDPKAVSRVI--VEKLVD-MYGEAGKGEDNQLHFAEEGPTVFLFVGVNGAGKTTT 139

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +GKL+ ++ + G +V+L A DTFR+ AI QL+ W  R     V +  G D AA+ ++  K
Sbjct: 140 VGKLAHQLKEEGKRVLLVAADTFRAGAIQQLQEWGRRVEVPVVATNPGGDPAAVVFDGVK 199

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+ +  DV+++DTAGRL N   LM  + K+ RV+ R  P AP  VL VLDATTGQNAL 
Sbjct: 200 RAKDEGYDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQNALN 259

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+     TG+++TK+DG+ +GG ++ I     +PV  +G+GE ++DL+ F    F 
Sbjct: 260 QAKEFNQTTQITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDPTKFV 319

Query: 308 A 308
           A
Sbjct: 320 A 320


>gi|139436970|ref|ZP_01771130.1| Hypothetical protein COLAER_00103 [Collinsella aerofaciens ATCC
           25986]
 gi|133776617|gb|EBA40437.1| Hypothetical protein COLAER_00103 [Collinsella aerofaciens ATCC
           25986]
          Length = 305

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/278 (35%), Positives = 165/278 (59%), Gaps = 9/278 (3%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
           +D+   E+LED L+  D+G  VA ++ ++L      K++ +  ++   ++E + +  +P+
Sbjct: 28  VDEDFWEDLEDTLVMGDMGAEVAIQVSDDLRDAAAKKNLKTAPQLRRALAEQLEQHFVPI 87

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            +     FS  P  +L VG+NG GKTT +GK++  M+  G  V++ + DTFR+AAI+QL 
Sbjct: 88  ERD---PFSDTPSCVLFVGINGAGKTTTVGKIASAMAARGKNVVIGSADTFRAAAIEQLD 144

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +W  R     +  + GSD A++ Y+   +A  +  D+++IDTAGRLH +  LM  + K++
Sbjct: 145 VWGQRAGVPVIKRDRGSDPASVCYDVLDEADKRGSDLVLIDTAGRLHTSPELMRELAKVV 204

Query: 220 RVLKRLDPH-----APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
            V ++   +      P SV+ V+DA TGQN L Q   F+   G  G+IMTK+DGTA+GG 
Sbjct: 205 NVTRKRAANMAAGPMPVSVVLVIDAATGQNGLNQALEFNEALGLDGIIMTKLDGTAKGGI 264

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            + +    K+P+  +GVGE ++DL+ F AKDF   + G
Sbjct: 265 AMAVAEKLKLPILRVGVGEQVDDLQEFNAKDFCRALVG 302


>gi|168188030|ref|ZP_02622665.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum C str. Eklund]
 gi|169294126|gb|EDS76259.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum C str. Eklund]
          Length = 302

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/296 (40%), Positives = 190/296 (64%), Gaps = 3/296 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   KL  G + T     E ++++++ + ++D+ + EELE++LI +DIGV  +  +++ +
Sbjct: 4   NLFNKLKDGLSKTKNNFTEKVSEVLNLAVKIDEDLFEELEEILITADIGVDTSLDVIDRV 63

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K   K ++  + +Y  S L   ++  L++    + +  P  +LV+GVNG GKTT IGK
Sbjct: 64  KIKVKEKRITDPKEVY--SCLKEVLIEILNEENKVEENITPKTVLVIGVNGAGKTTSIGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +S ++ + G KV++AA DTFR+AAIDQL++W++R   D +  + GSD A++ ++A + A+
Sbjct: 122 MSHRLKEDGYKVLMAAADTFRAAAIDQLEVWSNRAGVDIIRHQEGSDPASVVFDAIQAAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K DVLI DTAGRLHN   LM  + K+ R++ R    +    L VLD TTGQNAL+Q +
Sbjct: 182 ARKTDVLICDTAGRLHNKKNLMNELEKINRIIDREYGESKKETLLVLDGTTGQNALQQAK 241

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            F  V    G+++TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F A+ F
Sbjct: 242 QFAEVCPIDGIVITKLDGTAKGGVIIAIKHQLNIPVKFIGVGEGIDDLQEFDAESF 297


>gi|15605555|ref|NP_220341.1| cell division protein FtsY [Chlamydia trachomatis D/UW-3/CX]
 gi|76789565|ref|YP_328651.1| hypothetical protein CTA_0894 [Chlamydia trachomatis A/HAR-13]
 gi|237803252|ref|YP_002888446.1| Cell Division Protein [Chlamydia trachomatis B/Jali20/OT]
 gi|255311660|ref|ZP_05354230.1| Cell Division Protein [Chlamydia trachomatis 6276]
 gi|255317961|ref|ZP_05359207.1| Cell Division Protein [Chlamydia trachomatis 6276s]
 gi|3329289|gb|AAC68417.1| Cell Division Protein FtsY [Chlamydia trachomatis D/UW-3/CX]
 gi|76168095|gb|AAX51103.1| FtsY [Chlamydia trachomatis A/HAR-13]
 gi|231274486|emb|CAX11282.1| Cell Division Protein [Chlamydia trachomatis B/Jali20/OT]
 gi|296437306|gb|ADH19476.1| Cell Division Protein [Chlamydia trachomatis G/11222]
 gi|297748949|gb|ADI51495.1| FtsY [Chlamydia trachomatis D-EC]
 gi|297749829|gb|ADI52507.1| FtsY [Chlamydia trachomatis D-LC]
          Length = 284

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/269 (38%), Positives = 151/269 (56%), Gaps = 7/269 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97
           + L   + E  E LL   D G  + +   EEL   +   + +V+ ++   +S++I K+  
Sbjct: 15  KTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRRCKNPDERAVKELIRSFLSKIISKL-- 72

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P  +P     S RP   LV+G NG GKTT + KL+        KV++ A DTFRSA +DQ
Sbjct: 73  PQREPL----SVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLIVATDTFRSAGMDQ 128

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           ++ WA+  +  F+  + G DAAA+A++    A A+  D +IIDT+GRLH ++ L+  + K
Sbjct: 129 MRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRLHTHTNLLKELQK 188

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +  V  +  P APH  L  +DAT G N L QV++FH      GLI TK++G+A+GG L  
Sbjct: 189 IATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTKVEGSAKGGSLFR 248

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           I    KIP  F+G GE I+D EPF    F
Sbjct: 249 IADELKIPTRFVGYGETIHDFEPFAIDRF 277


>gi|26553936|ref|NP_757870.1| signal recognition particle GTPase FtsY [Mycoplasma penetrans HF-2]
 gi|26453944|dbj|BAC44274.1| signal recognition particle GTPase FtsY [Mycoplasma penetrans HF-2]
          Length = 354

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 174/312 (55%), Gaps = 19/312 (6%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV----EE 69
           +K  +G   +S  L + IT+I+   +++D+   E +E+LLI  D+GV    KI     EE
Sbjct: 48  KKFDEGLKKSSSTLSKAITEIVKKFKKVDEEFYENIEELLISYDVGVLATNKITDAIREE 107

Query: 70  LLTKRYA-----KDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +  +        K++ V ++  Y + +      + + K        R +++L++GVNGVG
Sbjct: 108 ITFQNVEDPDLIKEIIVDKIFTYYIQDTDTNTFLDIKK-------DRTNILLIMGVNGVG 160

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182
           KTT I K++        KV+L AGDTFR+ A++QL IW+ R   D V  +  G D A++ 
Sbjct: 161 KTTSIAKIANHFIKKDKKVLLVAGDTFRAGAVEQLNIWSQRLKCDIVLPDKEGQDPASVI 220

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           +   K+ + +  D++I DT+GRLHN   LM  + K+  V+ + D  APH  L VLDAT G
Sbjct: 221 FTGVKKGKDENYDLVICDTSGRLHNKINLMKELEKIHSVIHKFDDTAPHENLLVLDATLG 280

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+ + Q + F  +   TG+I+TKMDGT++GG ++ I     IPV ++G+GE + DL  F 
Sbjct: 281 QSGIMQAKAFKEITNITGIILTKMDGTSKGGIVLSIKDNFNIPVKYIGLGEKLEDLSAFD 340

Query: 303 AKDFSAVITGCL 314
            + F   IT  L
Sbjct: 341 LEKFVDGITKEL 352


>gi|295133103|ref|YP_003583779.1| signal recognition particle-docking protein FtsY [Zunongwangia
           profunda SM-A87]
 gi|294981118|gb|ADF51583.1| signal recognition particle-docking protein FtsY [Zunongwangia
           profunda SM-A87]
          Length = 316

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/256 (44%), Positives = 162/256 (63%), Gaps = 6/256 (2%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HR 110
           SD+GVA   KI+  +   R AKD  +    +   + E I  +L   +     DF+    +
Sbjct: 56  SDVGVATTIKIINRI-EDRVAKDKYLGTDELNKILREEIAGLLSETNSGNATDFTVPNKK 114

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+V++VVGVNGVGKTT IGKL+ +    GLKV+L A DTFR+AAIDQL++WA+RT    +
Sbjct: 115 PYVMMVVGVNGVGKTTTIGKLANQFKSRGLKVVLGAADTFRAAAIDQLQVWAERTDVPII 174

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
              +GSD A++A++  + A     DV++IDTAGRLHN   LM  + K+ RV++++ P AP
Sbjct: 175 KQSMGSDPASVAFDTVQNAVKMDADVVLIDTAGRLHNKVNLMKELSKVKRVMQKVIPDAP 234

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H VL VLD +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++G
Sbjct: 235 HEVLLVLDGSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIG 294

Query: 291 VGEGINDLEPFVAKDF 306
           VGE + DL+ F   +F
Sbjct: 295 VGERVEDLQVFNKFEF 310


>gi|170781181|ref|YP_001709513.1| signal recognition particle receptor [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155749|emb|CAQ00870.1| signal recognition particle receptor [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 291

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/297 (39%), Positives = 168/297 (56%), Gaps = 14/297 (4%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAK 77
           A T   L   +  + +   +D+   ++LE  LI +D G  V +  +++L  K    R   
Sbjct: 3   ARTPWSLSGALRGMFAKPTIDETTWDDLETALITADFGPDVTEATIDDLREKVERYRTTD 62

Query: 78  DVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
              +QR+L + + E + K    L        S RP VILVVGVNGVGKTT IGK +K + 
Sbjct: 63  PRDLQRMLRESIEERLAKHDPTLK------LSARPAVILVVGVNGVGKTTTIGKFAKFLR 116

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVD 195
           + G   ++ A DTFR+AA+DQL  WADR  A+ V   + G D A++A++  + A     +
Sbjct: 117 NYGRTAVVGAADTFRAAAVDQLATWADRAGAEIVRPQQPGQDPASVAFQTVEHAMRTGTE 176

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++IIDTAGRLH    LM  + K+ RV+++  P A   VL VLDATTGQN L Q + F   
Sbjct: 177 MVIIDTAGRLHTKGGLMDELSKIRRVVEKQSPIA--EVLLVLDATTGQNGLAQAQAFIEH 234

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            G TGL++TK+DG+A+GG ++ +     IP+  +G GEGI DL  F    F+  + G
Sbjct: 235 GGVTGLVITKLDGSAKGGFILNVQERTGIPIKLIGQGEGIGDLTGFTPHVFAQNLVG 291


>gi|255507442|ref|ZP_05383081.1| Cell Division Protein [Chlamydia trachomatis D(s)2923]
 gi|289525866|emb|CBJ15348.1| Cell Division Protein [Chlamydia trachomatis Sweden2]
 gi|296435451|gb|ADH17629.1| Cell Division Protein [Chlamydia trachomatis E/150]
 gi|296439168|gb|ADH21321.1| Cell Division Protein [Chlamydia trachomatis E/11023]
          Length = 284

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 150/269 (55%), Gaps = 7/269 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97
           + L   + E  E LL   D G  + +   EEL   +   + +V+ ++   +S++I K+  
Sbjct: 15  KTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRRCKNPDERAVKELIRSFLSKIIAKL-- 72

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P  +P     S RP   LV+G NG GKTT + KL+        KV+  A DTFRSA +DQ
Sbjct: 73  PQREPL----SVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLTVATDTFRSAGMDQ 128

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           ++ WA+  +  F+  + G DAAA+A++    A A+  D +IIDTAGRLH ++ L+  + K
Sbjct: 129 MRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTAGRLHTHTNLLKELQK 188

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +  V  +  P APH  L  +DAT G N L QV++FH      GLI TK++G+A+GG L  
Sbjct: 189 IATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTKVEGSAKGGSLFR 248

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           I    KIP  F+G GE I+D EPF    F
Sbjct: 249 IADELKIPTRFVGYGETIHDFEPFAIDRF 277


>gi|254519215|ref|ZP_05131271.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           7_2_43FAA]
 gi|226912964|gb|EEH98165.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           7_2_43FAA]
          Length = 307

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/256 (44%), Positives = 161/256 (62%), Gaps = 1/256 (0%)

Query: 56  SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           SDIG+    +I++ L  K R  K      V   +  +I  +L+  ++    + S    V+
Sbjct: 51  SDIGMDTTLEIIDRLKAKIRKEKINDPSEVYPALKAVIKDILLEGTEEREENLSSEKKVL 110

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           LV+GVNGVGKTT IGKL+ K  + G KV+LAA DTFR+AAIDQL++W++R   D V    
Sbjct: 111 LVIGVNGVGKTTSIGKLAAKNKEEGKKVLLAAADTFRAAAIDQLEVWSERAGVDIVKHME 170

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD AA+ ++A   A+++ +D+LI DTAGRLHN   LM  + K+ R++ R    A    L
Sbjct: 171 GSDPAAVVFDAVSAAKSRNIDLLICDTAGRLHNKKNLMDELSKIGRIIDREFSDASKETL 230

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNA+ Q + F       G+I+TK+DGTA+GG +I I  T  IPV ++GVGEG
Sbjct: 231 LVLDATTGQNAVIQAKQFMEACPIDGIILTKLDGTAKGGVVISIKNTLNIPVRYIGVGEG 290

Query: 295 INDLEPFVAKDFSAVI 310
           I+DL+ F A+ F+  +
Sbjct: 291 IDDLQEFDAEGFAEAL 306


>gi|293400484|ref|ZP_06644629.1| signal recognition particle-docking protein FtsY
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305510|gb|EFE46754.1| signal recognition particle-docking protein FtsY
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 322

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 124/305 (40%), Positives = 175/305 (57%), Gaps = 13/305 (4%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
            S++K     LS + K  K F+    +L  G   +      D+   EEL  +L+ +DIG+
Sbjct: 11  FSSKKDGDRYLSGLNKSKKSFSERIRRLAVGFAGV------DEAFLEELMIVLLEADIGI 64

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSK---PFNWDFSHRPHVILV 116
             AQKIV+E+  +  A D  +++       LI  M  M  +K   PF+ + +  P VIL+
Sbjct: 65  KTAQKIVDEVENR--AMDRKLKKFNEITDCLIEVMRDMYCAKEDAPFHKN-TDGPTVILM 121

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT   KL+K+  + G  V LAA DTFR+ AIDQL  WA R     +    G 
Sbjct: 122 VGVNGSGKTTTTAKLTKRFQEEGSSVALAAADTFRAGAIDQLATWAQRLDVPCIKGREGG 181

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D +A   +A +  +  ++D LI DTAGRL N + LM  + KM RV++R  P APH V  V
Sbjct: 182 DPSAALVDACRYVKEHQIDYLIGDTAGRLQNKANLMKELEKMRRVIEREIPGAPHEVWLV 241

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q ++F      TG+I+TK+DGTA+GG +I I     +PV ++G+GE ++
Sbjct: 242 LDATTGQNGISQAQIFLETTNVTGIILTKLDGTAKGGIVIAIREQLGLPVKYIGLGETVD 301

Query: 297 DLEPF 301
           DL PF
Sbjct: 302 DLRPF 306


>gi|313897518|ref|ZP_07831061.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           HGF2]
 gi|312957888|gb|EFR39513.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           HGF2]
          Length = 323

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/306 (41%), Positives = 173/306 (56%), Gaps = 15/306 (4%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREE-LEDL---LIRS 56
            S++K     LS + K  K F+    KL  G T          GV EE LEDL   L+ +
Sbjct: 11  FSSKKDGDRYLSGLDKSKKSFSERIRKLALGFT----------GVNEEFLEDLMVVLLEA 60

Query: 57  DIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           DIG+  AQKIV+E+ ++   + + S   +   + E++H++   +           P VIL
Sbjct: 61  DIGIKTAQKIVDEVESRAMDQKLKSFDEISECLIEVMHELYASVEDEDFHKNEDGPTVIL 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VGVNG GKTT   KL+K     G  V+LAA DTFR+ AIDQL  WADR     +    G
Sbjct: 121 MVGVNGSGKTTTTAKLTKLFQSEGSSVVLAAADTFRAGAIDQLAKWADRLGVTCIKGREG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D +A   +A + A+   +D LI DTAGRL N + LM  + KM RV++R  P APH V  
Sbjct: 181 GDPSAALVDACRYAKEHGMDYLIGDTAGRLQNKANLMQELSKMRRVIEREIPGAPHEVWL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQN + Q ++F      +G+I+TKMDGTA+GG +I I     +PV ++G+GE  
Sbjct: 241 VLDATTGQNGISQAQIFLETTKVSGIILTKMDGTAKGGIVIAIRDLLGLPVKYIGLGEKE 300

Query: 296 NDLEPF 301
           +DL PF
Sbjct: 301 DDLRPF 306


>gi|225165896|ref|ZP_03727665.1| signal recognition particle-docking protein FtsY [Opitutaceae
           bacterium TAV2]
 gi|224799858|gb|EEG18318.1| signal recognition particle-docking protein FtsY [Opitutaceae
           bacterium TAV2]
          Length = 253

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 139/202 (68%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VI+++GVNG GKTT   KL   +   G  V+LAA DTFR+AA++QLK WA R     V
Sbjct: 50  PTVIVMIGVNGSGKTTTSAKLGWLLKQDGKTVLLAACDTFRAAAVEQLKSWATRLDLPIV 109

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S  G+DAAA+AY+A++ A+A+  D LI+DTAGRLH  S LM  + K+ RVL++ DP AP
Sbjct: 110 ASHTGADAAAVAYDAWQAAKARGTDYLIVDTAGRLHTKSNLMEELAKIRRVLQKNDPAAP 169

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H    V+D + G N++ Q ++FH   G TGL++TK+DGT+RGG ++ I    K+P+YFLG
Sbjct: 170 HHAWLVVDGSLGTNSIEQAKVFHKAFGLTGLVVTKLDGTSRGGAIVGIWRELKLPIYFLG 229

Query: 291 VGEGINDLEPFVAKDFSAVITG 312
           +GE   DL+PF A+++S  + G
Sbjct: 230 LGEQPEDLQPFNAENYSRAVFG 251


>gi|332705391|ref|ZP_08425469.1| signal recognition particle-docking protein FtsY [Lyngbya majuscula
           3L]
 gi|332355751|gb|EGJ35213.1| signal recognition particle-docking protein FtsY [Lyngbya majuscula
           3L]
          Length = 639

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 189/317 (59%), Gaps = 6/317 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S + ++ E +SW+++L +G   T   L   I  I+    L+     E+E LL+++D+G+ 
Sbjct: 323 SPEDISIEEISWLKQLRQGLGKTRRSLINQIKAIVGQGPLNQDAVMEIESLLLQADVGIE 382

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVV 117
               I++ L  K   + +  ++ +  + ++I  +L  P S  ++  F+      ++ L+ 
Sbjct: 383 ATDYIIDTLQAKLREESLPAEKAIAYLKQIIRDLLEQPYSNNYSRIFAPENDTLNIWLMT 442

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT IGKL+     +G + ++AA DTFR+AA++Q+KIW +R+  + + +    +
Sbjct: 443 GVNGAGKTTTIGKLANLGQKSGYRCLIAAADTFRAAAVEQVKIWGERSGTEVIANPGKNT 502

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++    AQ++  ++L++DTAGRL N   LM  + K+ R++ +  P A    L V
Sbjct: 503 DPAAVVFDGISAAQSRNTELLLVDTAGRLQNKKNLMEELAKIRRIVAKKAPDAKVESLLV 562

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN LRQ ++F   A  +G+++TK+DG+A+GG  + +V    +P+ F+G GEGI 
Sbjct: 563 LDATLGQNGLRQAQVFSEAAKLSGVVLTKLDGSAKGGVALAVVRELGLPIRFIGAGEGIE 622

Query: 297 DLEPFVAKDF-SAVITG 312
           DL PF + +F  A+++G
Sbjct: 623 DLRPFSSYEFVEALLSG 639


>gi|328955640|ref|YP_004372973.1| signal recognition particle-docking protein FtsY [Coriobacterium
           glomerans PW2]
 gi|328455964|gb|AEB07158.1| signal recognition particle-docking protein FtsY [Coriobacterium
           glomerans PW2]
          Length = 306

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 109/281 (38%), Positives = 162/281 (57%), Gaps = 16/281 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLS-KPFN 104
           E+LED L+  D+G  +A K+ +EL      K++   R L   ++  +    +P S  P  
Sbjct: 34  EDLEDTLVMDDMGAEIAMKLTDELREIAARKNLKTSRQLRCALAARLEDYFVPSSCDPI- 92

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              S  P  +L VG+NG GKTT +GK++ K   AG + ++ + DTFR+AAI+QL IW +R
Sbjct: 93  ---SQTPSCVLFVGINGAGKTTTVGKIASKAVAAGKRTVIGSADTFRAAAIEQLDIWGER 149

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK- 223
                V    G+D A++ Y+   +A     D+++IDTAGRLH ++ LM  + K++ V + 
Sbjct: 150 AGVPVVKRTRGADPASVCYDVLDEADRIAADLVLIDTAGRLHTSADLMRELAKVVNVTRK 209

Query: 224 -----RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
                R  P A H VL V+DATTGQN L Q   F+   G  G+IMTK+DGTA+GG  + +
Sbjct: 210 RAERMRAGPMAVHVVL-VIDATTGQNGLAQASRFNDSLGLDGVIMTKLDGTAKGGIALAV 268

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319
               ++P+  +GVGE ++DL+ F A DFS  + G    GEE
Sbjct: 269 ASKLELPILAVGVGEQVDDLQTFDAGDFSRALVGT---GEE 306


>gi|302392421|ref|YP_003828241.1| signal recognition particle-docking protein FtsY [Acetohalobium
           arabaticum DSM 5501]
 gi|302204498|gb|ADL13176.1| signal recognition particle-docking protein FtsY [Acetohalobium
           arabaticum DSM 5501]
          Length = 369

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 153/252 (60%), Gaps = 1/252 (0%)

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           ++D+GV     +V+EL T    + +     L++V +   + ++       +D +HR  ++
Sbjct: 112 QADVGVHTTMGLVDELRTIAEEEGIKDPSKLHNVFKEQLEDILDRGADDVYD-NHRLTIL 170

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +VVGVNGVGKTT IGK++ +       V+LAAGDTFR+ AI+QL+ W      D +  E 
Sbjct: 171 MVVGVNGVGKTTTIGKIALRAKQNSQDVLLAAGDTFRAGAIEQLEAWGTEVGVDIISHEA 230

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D+AA+AY+A + A+A+  D+L++DTAGRLH    LM  + K+ R++ R    A   VL
Sbjct: 231 GADSAAVAYDAVQAAKARDKDLLVVDTAGRLHTQDNLMEELKKVHRIIDREAEDARVEVL 290

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNA+ Q EMF       G+ +TK+DGTA+GG ++ +     IPV  +GVGE 
Sbjct: 291 LVLDATTGQNAISQAEMFDKAVDVDGIALTKLDGTAKGGIILAVKEELGIPVKLIGVGED 350

Query: 295 INDLEPFVAKDF 306
           + DL+ F    F
Sbjct: 351 VEDLQDFEPDAF 362


>gi|330255506|gb|AEC10600.1| fused signal recognition particle receptor [Arabidopsis thaliana]
          Length = 373

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 111/278 (39%), Positives = 164/278 (58%), Gaps = 10/278 (3%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK 101
           D V +ELE+ L+ SD G  +  +IVE L     +  +     + D + E + +ML   + 
Sbjct: 94  DRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNS 153

Query: 102 PFNWDFSHR-PHVILVVGVNGVGKTTVI-------GKLSKKMSDAGLKVMLAAGDTFRSA 153
                   R P VI++VGVNG GKTT +       GKL+ ++ + G KV++AAGDTFR+A
Sbjct: 154 KTELQLGFRKPAVIMIVGVNGGGKTTSLDSGFCFSGKLAHRLKNEGTKVLMAAGDTFRAA 213

Query: 154 AIDQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           A DQL+IWA+RT  + V +E   + AA +  +A K+ + +  DV++ DT+GRLH N  LM
Sbjct: 214 ASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLM 273

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +    + + ++   AP+ +L VLD  TG N L Q   F+ V G TGLI+TK+DG+ARG
Sbjct: 274 EELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARG 333

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           G ++ +V    IPV F+GVGE + DL+PF  + F   I
Sbjct: 334 GCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAI 371


>gi|219849764|ref|YP_002464197.1| signal recognition particle-docking protein FtsY [Chloroflexus
           aggregans DSM 9485]
 gi|219544023|gb|ACL25761.1| signal recognition particle-docking protein FtsY [Chloroflexus
           aggregans DSM 9485]
          Length = 330

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 162/270 (60%), Gaps = 8/270 (2%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK--RYAKDVSVQRVLYDVSELIHKMLMP 98
           + D + +ELE+ LI++D+G+   Q +V   + +  RY     V++       L  +M+  
Sbjct: 51  ITDQLWDELEEALIQADVGLETTQYLVNRTIDRVNRY----GVKKAREAREMLKAEMVRT 106

Query: 99  LSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAID 156
            ++         +P+VILVVGVNG GKTT+I KL+ +  +  G KV+LAAGDTFR+AA +
Sbjct: 107 FAEYAGQQRPDAKPYVILVVGVNGAGKTTLIAKLAHRYKNRFGKKVLLAAGDTFRAAATE 166

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL+ WA+R     V    G+DAAA+ Y+A   A  + VD+LI+DTAGRLH    LM  + 
Sbjct: 167 QLETWAERAGVPCVSLGQGADAAAVVYKAIDAALEQDVDILIVDTAGRLHAKYNLMQELE 226

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+  ++ R  P APH  + V+DATTGQN + Q + F   AG T + +TKMDGTA+GG   
Sbjct: 227 KIRNIIARKLPGAPHETILVIDATTGQNGVLQAKAFLKAAGVTDVAVTKMDGTAKGGIAF 286

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            I    + P+ ++G GE ++DL  F A+ F
Sbjct: 287 AIAQDIERPIRYIGTGEKLDDLALFDAQTF 316


>gi|172038841|ref|YP_001805342.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171700295|gb|ACB53276.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 464

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 181/306 (59%), Gaps = 5/306 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           ++ E ++W+++L +G   +   L   +  I+    L++    E+E LL+++D G+     
Sbjct: 152 ISEEEINWLKRLRQGLGKSRRGLVNQLKSIVGQGPLNEDAVMEIEALLLQADTGIEATDY 211

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVI---LVVGVNG 121
           I+  L  K   + +  ++ L  +  ++  +L  PL K  N  F+    V+   L+ GVNG
Sbjct: 212 IISTLQNKLLEEALPPEQALDYLKSILRDILDRPLQKVVNPGFAPEKGVLNIWLLTGVNG 271

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT IGKL+     +G   ++AA DTFR+AA++Q+K+W +RT+   + +    +D AA
Sbjct: 272 AGKTTTIGKLAHLAQKSGYNCIIAAADTFRAAAVEQVKVWGERTNTPVIANPGKNTDPAA 331

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++    AQA++ D+L++DTAGRL N   LMA + K+ R++ +    A    L VLDAT
Sbjct: 332 VVFDGISAAQARQADLLLVDTAGRLQNKKNLMAELAKIRRIIDKKADKAQVESLLVLDAT 391

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQN LRQ ++F   A  +G+++TK+DGTA+GG  + +    ++P+ F+GVGEGI DL P
Sbjct: 392 LGQNGLRQAQVFSEAANLSGVVLTKLDGTAKGGVALAVAQQLELPIRFIGVGEGIEDLRP 451

Query: 301 FVAKDF 306
           F + +F
Sbjct: 452 FSSYEF 457


>gi|332655287|ref|ZP_08421027.1| signal recognition particle-docking protein FtsY [Ruminococcaceae
           bacterium D16]
 gi|332515792|gb|EGJ45402.1| signal recognition particle-docking protein FtsY [Ruminococcaceae
           bacterium D16]
          Length = 305

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/274 (41%), Positives = 172/274 (62%), Gaps = 7/274 (2%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML--- 96
            L D   +ELE+ LI +D G+    ++VEEL  +   + +   + + +  E + +++   
Sbjct: 35  ELTDDFYDELEESLILADTGMDTTLELVEELRGRVREEHI---KTVEEARECMCRVITDA 91

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           M + +P   + S +P V+L +GVNGVGKTT IGK+  ++ +   KV+L A DTFR+AA +
Sbjct: 92  MTVGEP-TLNLSTKPAVVLFIGVNGVGKTTTIGKIGHQLKNERKKVLLCAADTFRAAAAE 150

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL IWA+R+  + +    G+D AA+ ++A   A+A++ DV++IDTAGRLHN   LM  + 
Sbjct: 151 QLTIWAERSGVEIIKQHEGADPAAVVFDAASAAKARRADVVLIDTAGRLHNKQNLMNELN 210

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+ RV+ R  P      L VLDATTGQN L Q + F   AG TG+++TK+DGTA+GG  I
Sbjct: 211 KISRVIDRELPDCARETLLVLDATTGQNGLIQAKQFKEAAGITGIVLTKLDGTAKGGIAI 270

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            I     +PV + GVGEGI+DL+PF A +F+  +
Sbjct: 271 AIAKELGVPVKYAGVGEGIDDLKPFDAAEFAQAL 304


>gi|189219672|ref|YP_001940313.1| Signal recognition particle GTPase FtsY [Methylacidiphilum
           infernorum V4]
 gi|189186530|gb|ACD83715.1| Signal recognition particle GTPase FtsY [Methylacidiphilum
           infernorum V4]
          Length = 281

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 161/270 (59%), Gaps = 17/270 (6%)

Query: 44  GVREEL--EDLLIRSDIGVAVAQKIV-----EELLTKRYAKDVSVQRVLYDVSELIHKML 96
           G +E+L  E LL+ SD+G+ ++QK+      E+LL K    +  +++ L ++ +   K+ 
Sbjct: 16  GPKEQLDWEALLVESDLGINLSQKLYALLDKEKLLGKTELAEKRIKKELLNILQ-DRKLP 74

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           +P+ KP          VIL+VGVNG GKTT   KL+ +    G KV LAA DTFR+AAI+
Sbjct: 75  LPVGKP---------GVILLVGVNGGGKTTSAAKLAYRFKGEGKKVFLAACDTFRAAAIE 125

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLKIWAD+     V  + G+DAA++A+ +F QA   + D LI+DTAGR  N   LM  +G
Sbjct: 126 QLKIWADKLEVPVVLGKEGADAASVAFRSFGQALDAQADYLIVDTAGRQANKKNLMMELG 185

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+ R L+++    P  +L V+D T+G N L Q   F+   G  G+I+TK+D +A+GG + 
Sbjct: 186 KIKRTLEKVSGQIPLFILLVVDGTSGSNVLVQAREFNEALGLAGMIVTKLDSSAKGGMVA 245

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            +     IP YFLG GE ++ LE F  + F
Sbjct: 246 AVKYEVGIPTYFLGRGETLDSLEEFNPEKF 275


>gi|282882963|ref|ZP_06291567.1| signal recognition particle-docking protein FtsY [Peptoniphilus
           lacrimalis 315-B]
 gi|281297170|gb|EFA89662.1| signal recognition particle-docking protein FtsY [Peptoniphilus
           lacrimalis 315-B]
          Length = 297

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 111/262 (42%), Positives = 162/262 (61%), Gaps = 3/262 (1%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-R 110
           +LI +D+G+    K+++ L      + ++    + D+ +   K LM  ++  N   S   
Sbjct: 38  ILISADVGMDTTMKLIDNLRETIIKEKINDPSKVKDILKSETKKLM--NEELNKGISDIS 95

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P +ILVVGVNGVGKTT IGKL+K+  D G  V++AA DTFR+AAIDQLK W +R + D +
Sbjct: 96  PSIILVVGVNGVGKTTTIGKLAKRYKDEGKSVLIAAADTFRAAAIDQLKEWGNRVNVDVI 155

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G D AA+ ++A   A+++  D+LI+DTAGRLHN + LM  + K+ R++ +  P A 
Sbjct: 156 SHSEGQDPAAVVFDAITAAKSRNADILIVDTAGRLHNKANLMKELEKINRIIDKKYPEAY 215

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VLDATTGQNA+ Q + F      TG+ +TK+DGTA+GG +I +    +IP+  +G
Sbjct: 216 RETLLVLDATTGQNAMNQAKTFKEAVNITGIALTKLDGTAKGGVVIALQSELQIPIKLVG 275

Query: 291 VGEGINDLEPFVAKDFSAVITG 312
           VGEGI DL+ F   +F   I G
Sbjct: 276 VGEGIYDLQDFNLDNFLQGIFG 297


>gi|296270735|ref|YP_003653367.1| signal recognition particle-docking protein FtsY [Thermobispora
           bispora DSM 43833]
 gi|296093522|gb|ADG89474.1| signal recognition particle-docking protein FtsY [Thermobispora
           bispora DSM 43833]
          Length = 391

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 186/311 (59%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   S   + +L    A +   +  G+ +++S  RLDD V +E+E+ LI +D+GVA  +
Sbjct: 82  EVPPPSAGRMVRLRSRLARSQNVIGRGLLELLSRDRLDDEVWDEIEETLITADVGVAPTR 141

Query: 65  KIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS-HRPHVILVVGVNG 121
            +VE L TK +     + + +   + E +   + P L +    + +  RP V+L+VGVNG
Sbjct: 142 AMVENLRTKVKVLGTRTEEELRALLREELLAQVGPDLDRTLRTEPTGERPAVVLIVGVNG 201

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G KV+L A DTFR+AA DQL+ W +R  A  V    G+D A++
Sbjct: 202 TGKTTTAGKLARALVGDGKKVLLGAADTFRAAAADQLQTWGERVGAAVVRGPEGADPASV 261

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A  +  A KVD +I+DTAGRLH    LM  +GK+ RV+++        VL VLDATT
Sbjct: 262 AFDAVAKGIADKVDTVIVDTAGRLHTKVGLMDELGKIKRVIEKK--AQVDEVLLVLDATT 319

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN +RQ ++F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 320 GQNGMRQAQVFAEVVDVTGIVLTKLDGTAKGGIVISVQRELGVPVKLVGLGEGPDDLAPF 379

Query: 302 VAKDFSAVITG 312
             K F   I G
Sbjct: 380 DPKLFVDAIVG 390


>gi|312874442|ref|ZP_07734472.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 2052A-d]
 gi|325911862|ref|ZP_08174266.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners UPII 143-D]
 gi|311090054|gb|EFQ48468.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 2052A-d]
 gi|325476368|gb|EGC79530.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners UPII 143-D]
          Length = 337

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 149/261 (57%), Gaps = 10/261 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109
           I +D+G   A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S     
Sbjct: 72  IEADVGYETAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 128

Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               P V L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R  
Sbjct: 129 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 188

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  
Sbjct: 189 VQVISGNTNADPSSVVYEGLECAVNNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 248

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P  P  +L V+D +TGQNAL Q + F  +   TGL++TK+DG+++GG ++ I     +PV
Sbjct: 249 PDQPQEILLVIDGSTGQNALNQAKEFDKITKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 308

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GE   DL  F A+ F+
Sbjct: 309 KLVGLGEKAEDLAEFDAEKFA 329


>gi|313682715|ref|YP_004060453.1| signal recognition particle-docking protein ftsy [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155575|gb|ADR34253.1| signal recognition particle-docking protein FtsY [Sulfuricurvum
           kujiense DSM 16994]
          Length = 295

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 106/278 (38%), Positives = 165/278 (59%), Gaps = 18/278 (6%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           ++ELE++L+ +D    V   +VE +L + Y  D++         +L  K+L  L+   N 
Sbjct: 29  KDELENILLEAD----VEYDLVEIILRELYQNDITR-------DQLRSKLLATLAYAQNS 77

Query: 106 --DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
             D  ++P V L++GVNG GKTT I KL++   + G +V+L AGDTFR+AAI+QL  WAD
Sbjct: 78  LPDNPNKPTVTLIIGVNGAGKTTTIAKLAQHHLNKGERVILGAGDTFRAAAIEQLTRWAD 137

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +     V S  G D +A+AY+  + A+A+  + +IIDTAGRLH  + L   + K++R+  
Sbjct: 138 KLDVPIVSSRQGHDPSAVAYDTIESAKARGFEQVIIDTAGRLHTQTNLGNELKKIVRICD 197

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           +    APH  + +LD T G +A+ Q + F+ + G  G+I+TK+DGTA+GG +  I     
Sbjct: 198 KAHTGAPHRKILILDGTQGSSAIAQAKAFNEMIGVDGIIITKLDGTAKGGSVFSIAYALS 257

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD--YGEE 319
           +P+ ++GVGE    L PF   +F   + G LD  +GEE
Sbjct: 258 LPILYIGVGEQPEHLIPFDKYEF---VDGILDAIFGEE 292


>gi|325265086|ref|ZP_08131813.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           D5]
 gi|324029776|gb|EGB91064.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           D5]
          Length = 312

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 127/305 (41%), Positives = 182/305 (59%), Gaps = 12/305 (3%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            E   + ++L  G   T   +  G+  I     ++DD   EELE+ LI  D+GV    +I
Sbjct: 2   EEKQGFFKRLVSGLTKTRDNIVSGMDSIFHGFSKIDDDFYEELEETLIMGDLGVHTTMEI 61

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGVNG 121
           +E+L  K  A+ +   +   +  EL   ++  + +  N     ++F  R  V+ V+GVNG
Sbjct: 62  IEDLKAKVKAQHI---KEPIECREL---LIESIKEQMNVGETAYEFEDRTSVVFVIGVNG 115

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ K  +   KV+LAA DTFR+AA +QLK WA+R   + +  + GSD A++
Sbjct: 116 VGKTTTIGKLAGKFHEQHKKVILAAADTFRAAAGEQLKEWANRAEVEMIGGQEGSDPASV 175

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A   A+A+K D+L+ DTAGRLHN   LM  + K+ RV+ R  P A    L VLDATT
Sbjct: 176 VFDAVAAARARKADILLCDTAGRLHNKKNLMEELKKINRVIDREYPEAHKETLVVLDATT 235

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + F+ V+  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I DL+ F
Sbjct: 236 GQNALSQAKEFNEVSDITGVILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIEDLQKF 295

Query: 302 VAKDF 306
            A +F
Sbjct: 296 DADEF 300


>gi|126657247|ref|ZP_01728413.1| cell division protein; FtsY [Cyanothece sp. CCY0110]
 gi|126621518|gb|EAZ92229.1| cell division protein; FtsY [Cyanothece sp. CCY0110]
          Length = 463

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 180/306 (58%), Gaps = 5/306 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V+ E ++W+++L +G   +   L   +  I+    L++    E+E LL+++D G+     
Sbjct: 151 VSQEEINWLKRLRQGLGKSRRGLVNQLKSIVGQGPLNEDAVMEIEALLLQADTGIEATDY 210

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVI---LVVGVNG 121
           I+  L  K   + +  ++ L  +  ++ ++L  PL K  N  F+    V+   L+ GVNG
Sbjct: 211 IISTLQNKLLEEALPPEQALEYLKSILREILDRPLQKVVNPGFAPEKGVLNIWLLTGVNG 270

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT IGKL+     +G   ++AA DTFR+AA+ Q+++W +RT+   + +    +D AA
Sbjct: 271 AGKTTTIGKLAHLAQQSGYNCIIAAADTFRAAAVQQVQVWGERTNTPVIANPGKNTDPAA 330

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++    AQA++ D+L++DTAGRL N   LMA + K+ R++ +    A    L VLDAT
Sbjct: 331 VVFDGISAAQAREADLLLVDTAGRLQNKKNLMAELAKIRRIIDKKADKAQVESLLVLDAT 390

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQN LRQ ++F   A  +G+++TK+DGTA+GG  + +     +P+ F+GVGEGI DL P
Sbjct: 391 LGQNGLRQAQVFSEAANLSGVVLTKLDGTAKGGVALAVAQQLDLPIRFIGVGEGIEDLRP 450

Query: 301 FVAKDF 306
           F + +F
Sbjct: 451 FSSYEF 456


>gi|223986253|ref|ZP_03636268.1| hypothetical protein HOLDEFILI_03578 [Holdemania filiformis DSM
           12042]
 gi|223961779|gb|EEF66276.1| hypothetical protein HOLDEFILI_03578 [Holdemania filiformis DSM
           12042]
          Length = 323

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 108/259 (41%), Positives = 152/259 (58%), Gaps = 7/259 (2%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           EEL  +L+ SD+G+  A+KI ++L T     RY     V   L ++ + I+  L     P
Sbjct: 51  EELMIVLLESDVGIQTAEKICDQLKTTVDQYRYVTFKDVMAFLMEIMQNIY--LESTDAP 108

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
              +  + P VIL+VGVNG GKTT   KL+K     G KV + A DTFR+ AI+QL  WA
Sbjct: 109 IVMN-ENGPTVILMVGVNGSGKTTTCAKLTKLYQSQGKKVGVVAADTFRAGAIEQLARWA 167

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D+     +      D +++  +  + A+   +D+L+ DTAGRL N   LM  + KM +V+
Sbjct: 168 DKLGVPCIKGRENGDPSSVLVDGCRYAKEHNLDILLCDTAGRLQNKVNLMNELAKMRKVI 227

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            R    APH V  VLD+TTGQN L Q ++F  V   TG+I+TKMDGTA+GG ++ I    
Sbjct: 228 GREIEGAPHHVWLVLDSTTGQNGLSQAKIFQEVTDVTGIILTKMDGTAKGGIVLAIKDVL 287

Query: 283 KIPVYFLGVGEGINDLEPF 301
            IPVY+LG+GE  +DL+PF
Sbjct: 288 HIPVYYLGLGEREDDLKPF 306


>gi|299138352|ref|ZP_07031531.1| signal recognition particle-docking protein FtsY [Acidobacterium
           sp. MP5ACTX8]
 gi|298599598|gb|EFI55757.1| signal recognition particle-docking protein FtsY [Acidobacterium
           sp. MP5ACTX8]
          Length = 334

 Score =  185 bits (470), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/321 (36%), Positives = 188/321 (58%), Gaps = 18/321 (5%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVA 61
           +Q  +S+   +  ++ +  + T   L E I  +++ +R +D+   ++LE +L+ SDIG  
Sbjct: 24  SQPESSKPRGFFDRMKQAVSRTREALSESIGSVVALTREIDENNLDDLELVLLASDIGSV 83

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVI 114
              +I+  L      ++ ++++ + D +EL       + ++L  ++ P     S  P VI
Sbjct: 84  TTGEIITHL------RERALRQGINDGAELKSLLKAELRRILDSVAHPIAHP-STPPEVI 136

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           ++VGVNG GKTT  GKL+      G  V+L A DTFR+AAI+QL++WA R+    + +  
Sbjct: 137 MMVGVNGTGKTTTTGKLAALYRSQGRSVLLCAADTFRAAAIEQLEVWAGRSGVQLIKTRQ 196

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G D +A  ++A   A+A+  ++LI+DTAGRLH  S LM  + KM R  ++L P APH  L
Sbjct: 197 GGDPSAALFDACTAAKARATEILIVDTAGRLHTKSDLMKELDKMRRTAEKLIPGAPHQTL 256

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DATTGQN L+Q  +F   A  TG+++TK+DGTA+GG ++ I     +PV + GVGE 
Sbjct: 257 LVMDATTGQNGLQQARLFTEAARVTGIVLTKLDGTAKGGIVVAIARELGLPVLYAGVGEK 316

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           + D+ PF   D +A +   LD
Sbjct: 317 MEDILPF---DPAAFVDSLLD 334


>gi|72161062|ref|YP_288719.1| signal recognition particle-docking protein FtsY [Thermobifida
           fusca YX]
 gi|71914794|gb|AAZ54696.1| signal recognition particle-docking protein FtsY [Thermobifida
           fusca YX]
          Length = 393

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 120/282 (42%), Positives = 170/282 (60%), Gaps = 11/282 (3%)

Query: 31  GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           G+ ++++S +LD+   EE+ED LI +D+GV  A +I E L T+     V   R + +V  
Sbjct: 109 GLLNLLASDKLDEDTWEEIEDTLITADVGVTSATQITEGLRTRVR---VLGTRSVDEVRA 165

Query: 91  LIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           L+ + L+    P             RP VI+VVGVNGVGKTT  GKL++ +   G  V+L
Sbjct: 166 LLREELLAHINPKLDRTVRTKGPGERPAVIMVVGVNGVGKTTTAGKLARVVIGDGGSVVL 225

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            A DTFR+AA DQL+ W +R  A  V    G+D A++A++A  Q   +  D +IIDTAGR
Sbjct: 226 GAADTFRAAAADQLQTWGERVGATVVRKHEGADPASVAFDAVSQGIEQGADTVIIDTAGR 285

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LH  + LM  +GK+ RV+++        VL VLDATTGQN LRQ  +F  V   TG+++T
Sbjct: 286 LHTKTGLMDELGKVKRVVEK--KAQVDEVLLVLDATTGQNGLRQARVFAEVVNVTGIVLT 343

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           KMDGTA+GG +I +     +PV  +G+GEG +DL PF  + F
Sbjct: 344 KMDGTAKGGIIIQVQRELGVPVKLVGLGEGPDDLAPFDPETF 385


>gi|255349224|ref|ZP_05381231.1| Cell Division Protein [Chlamydia trachomatis 70]
 gi|255503761|ref|ZP_05382151.1| Cell Division Protein [Chlamydia trachomatis 70s]
          Length = 284

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 108/274 (39%), Positives = 148/274 (54%), Gaps = 17/274 (6%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-- 96
           + L   + E  E LL   D G  + +   EEL   R  K+   +RV   V ELI   L  
Sbjct: 15  KTLSSDLLEYAEVLLYEGDFGPKLTEAFCEEL---RRCKNPD-ERV---VKELIRSFLSK 67

Query: 97  ----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
               +P  +P     S RP   LV+G NG GKTT + KL+        KV+  A DTFRS
Sbjct: 68  IIAKLPQREPL----SVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLTVATDTFRS 123

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           A +DQ++ WA+  +  F+  + G DAAA+A++    A A+  D +IIDT+GRLH ++ L+
Sbjct: 124 AGMDQMRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRLHTHTNLL 183

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+  V  +  P APH  L  +DAT G N L QV++FH      GLI TK++G+A+G
Sbjct: 184 KELQKIATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTKVEGSAKG 243

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G L  I    KIP  F+G GE I+D EPF    F
Sbjct: 244 GSLFRIADELKIPTRFVGYGETIHDFEPFAIDRF 277


>gi|119486598|ref|ZP_01620648.1| cell division protein [Lyngbya sp. PCC 8106]
 gi|119456215|gb|EAW37347.1| cell division protein [Lyngbya sp. PCC 8106]
          Length = 559

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 110/318 (34%), Positives = 193/318 (60%), Gaps = 12/318 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + VA E ++W++KL +G   T   L   +  I+    L++   EE+E LL+++D+GV   
Sbjct: 245 EDVALEEITWLQKLWRGLGRTRRNLLNQLKAIVGQGPLNEEAVEEIESLLLQADVGVEAT 304

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH--RP-----HVILV 116
             ++  L  K   + +  ++ +  + +++ ++L    +P+   +S    P     ++ L+
Sbjct: 305 DTVIAALQEKIRTEILPPEQAIAYLKQILRELL---DRPYQNGYSPLFAPQKDTLNIWLM 361

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IG 175
            GVNG GKTT IGK+    + +  + ++AA DTFR+AA++Q++IW +R+  D + +    
Sbjct: 362 TGVNGAGKTTTIGKIGHIATKSDYRCLIAAADTFRAAAVEQVRIWGERSGVDVIANPGKN 421

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D AA+ ++A + A+++ +++L++DTAGRL N   LM  + K+ RV+++  P A    L 
Sbjct: 422 TDPAAVVFDAMEAARSRNIELLLVDTAGRLQNKKNLMEELSKVRRVIEKKAPDAIVESLL 481

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDAT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + IV    +P+ F+GVGE I
Sbjct: 482 VLDATLGQNGLRQAEVFAEAAQLSGVVLTKLDGTAKGGVALAIVQKLGLPIRFIGVGESI 541

Query: 296 NDLEPFVAKDF-SAVITG 312
            DL PF + +F  A+++G
Sbjct: 542 EDLRPFSSYEFIEALLSG 559


>gi|227892633|ref|ZP_04010438.1| signal recognition particle docking protein FtsY [Lactobacillus
           ultunensis DSM 16047]
 gi|227865565|gb|EEJ72986.1| signal recognition particle docking protein FtsY [Lactobacillus
           ultunensis DSM 16047]
          Length = 430

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 151/259 (58%), Gaps = 5/259 (1%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           I SD+G   A+++ +EL     L    ++D   Q ++  + +L  K      +   +   
Sbjct: 164 IESDVGYETAEQLTDELREEAKLKNAKSRDALKQVIVEKLVDLYDKGGQDKDEKLIYHPD 223

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P+V L VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL  W  R    
Sbjct: 224 DKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVP 283

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V  +  +D A++ Y+A ++A  +K D L++DTAGRL N   LMA + K+ R +K+L P 
Sbjct: 284 VVTGKEKADPASVVYDATERAINEKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLAPD 343

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  
Sbjct: 344 QPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVKL 403

Query: 289 LGVGEGINDLEPFVAKDFS 307
           +G+GE   DL  F A +++
Sbjct: 404 VGLGEKAEDLADFDAANYA 422


>gi|293381178|ref|ZP_06627186.1| signal recognition particle-docking protein FtsY [Lactobacillus
           crispatus 214-1]
 gi|290922218|gb|EFD99212.1| signal recognition particle-docking protein FtsY [Lactobacillus
           crispatus 214-1]
          Length = 432

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 99/259 (38%), Positives = 153/259 (59%), Gaps = 5/259 (1%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           I SD+G   A+++ +EL     L    ++D   + ++  + +L  K      +   ++  
Sbjct: 166 IESDVGYETAEQLTDELREEAKLQNAKSRDELKRVIVEKLVDLYDKGGNSEDEQLTYNAE 225

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P+V L+VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL  W  R    
Sbjct: 226 AKPNVYLLVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVP 285

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V  +  +D A++ Y+A ++A  +K D L++DTAGRL N   LMA + K+ R +K+L P 
Sbjct: 286 VVTGKEKADPASVVYDATERAIREKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPD 345

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  
Sbjct: 346 QPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVKL 405

Query: 289 LGVGEGINDLEPFVAKDFS 307
           +G+GE   DL  F A +++
Sbjct: 406 VGLGERAEDLADFDAANYA 424


>gi|295396042|ref|ZP_06806226.1| cell division protein FtsY [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971130|gb|EFG47021.1| cell division protein FtsY [Brevibacterium mcbrellneri ATCC 49030]
          Length = 377

 Score =  185 bits (469), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 121/312 (38%), Positives = 184/312 (58%), Gaps = 13/312 (4%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++V +E  + + KL    A ++  +  G+  ++S   LD+   EE+ED LI +D+GV  A
Sbjct: 63  REVPTEPTTRLAKLRNRLAKSNNAMGRGLLALLSRDTLDEATWEEIEDTLIVADLGVDTA 122

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-------PHVILV 116
            ++V+ L   R    V   R L  V  L+ + L+ +  P   D + R       P V+LV
Sbjct: 123 TELVDNL---RERVRVLGTRDLSTVRALLREELIKVVDP-TMDRTLRTETGGDEPSVVLV 178

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT +GK+++ +  +   V+L A DTFR+AA +QL  W +R   + V    GS
Sbjct: 179 VGVNGAGKTTTVGKIARVLVASDRTVLLGAADTFRAAAAEQLTTWGERVGVETVRGPEGS 238

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL--DPHAPHSVL 234
           D A++AY A ++     VDV++IDTAGRL N   LM  +GK+ +V  R   + H    VL
Sbjct: 239 DPASVAYSAVERGLKDNVDVVLIDTAGRLQNKKGLMDELGKVKKVATRPLGEGHELDEVL 298

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQN ++Q ++F  V   +G+++TK+DGTA+GG ++ +     +PV  +G+GEG
Sbjct: 299 LVLDATTGQNGMQQAKVFAEVVNVSGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEG 358

Query: 295 INDLEPFVAKDF 306
            +DL PFV +DF
Sbjct: 359 ADDLAPFVVEDF 370


>gi|315653378|ref|ZP_07906300.1| cell division protein FtsY [Lactobacillus iners ATCC 55195]
 gi|315489303|gb|EFU78943.1| cell division protein FtsY [Lactobacillus iners ATCC 55195]
          Length = 345

 Score =  185 bits (469), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109
           I +D+G   A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S     
Sbjct: 80  IEADVGYETAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 136

Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               P V L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R  
Sbjct: 137 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 196

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  
Sbjct: 197 VQVISGNTNADPSSVVYEGLECAVKNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 256

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P  P  +L V+D +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV
Sbjct: 257 PDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 316

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GE   DL  F A+ F+
Sbjct: 317 KLVGLGEKAEDLAEFDAEKFA 337


>gi|241764418|ref|ZP_04762443.1| signal recognition particle-docking protein FtsY [Acidovorax
           delafieldii 2AN]
 gi|241366208|gb|EER60779.1| signal recognition particle-docking protein FtsY [Acidovorax
           delafieldii 2AN]
          Length = 327

 Score =  185 bits (469), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 126/303 (41%), Positives = 182/303 (60%), Gaps = 7/303 (2%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E   W+ +L  G   T       I  + +  ++DD + EELE+ L+ +D GV   Q ++E
Sbjct: 29  ERKGWLDRLKAGLRKTG----SSIATVFTGTQIDDTLYEELEEALLMADTGVKATQHLLE 84

Query: 69  ELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +L  + + +K      V   +++ + ++L PL K       H P VI+V GVNG GKTT 
Sbjct: 85  DLKRRVKESKTTDPAAVKGLLADALAELLRPLEKALVIG-EHTPTVIMVAGVNGAGKTTS 143

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K ++  G  V+LAA DTFR+AA +QL +WADR + + V  E G D AA++++A  
Sbjct: 144 IGKLTKHLATEGASVLLAAADTFRAAAREQLGVWADRNTVEIVSQE-GGDPAAVSFDAVT 202

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL 
Sbjct: 203 AGKARGKDVVLVDTAGRLPTQLHLMEELKKIRRVVTKADATAPHEVLLVIDGNTGQNALA 262

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QV  F      TGL++TK+DGTA+GG L  I     IPVYF+GVGE + DLE F A++F+
Sbjct: 263 QVRAFDDALQLTGLVVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKLEDLETFNAREFA 322

Query: 308 AVI 310
             +
Sbjct: 323 QAL 325


>gi|312872428|ref|ZP_07732497.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 2062A-h1]
 gi|325913459|ref|ZP_08175825.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners UPII 60-B]
 gi|311092010|gb|EFQ50385.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 2062A-h1]
 gi|325477228|gb|EGC80374.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners UPII 60-B]
          Length = 337

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109
           I +D+G   A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S     
Sbjct: 72  IEADVGYETAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 128

Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               P V L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R  
Sbjct: 129 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 188

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  
Sbjct: 189 VQVISGNTNADPSSVVYEGLECAVKNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 248

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P  P  +L V+D +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV
Sbjct: 249 PDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 308

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GE   DL  F A+ F+
Sbjct: 309 KLVGLGEKAEDLAEFDAEKFA 329


>gi|256849803|ref|ZP_05555234.1| cell division protein [Lactobacillus crispatus MV-1A-US]
 gi|256713292|gb|EEU28282.1| cell division protein [Lactobacillus crispatus MV-1A-US]
          Length = 415

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 156/260 (60%), Gaps = 7/260 (2%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF 107
           I SD+G   A+++ +EL     L    ++D  ++RV+ + + +L  K      +   ++ 
Sbjct: 149 IESDVGYETAEQLTDELREEAKLQNAKSRD-DLKRVIVEKLVDLYDKGGNSEDEQLTYNA 207

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
             +P+V L VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL  W +R   
Sbjct: 208 EAKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGNRVDV 267

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V  +  +D A++ Y+A ++A  +K D L++DTAGRL N   LMA + K+ R +K+L P
Sbjct: 268 PVVTGKEKADPASVVYDATERAIREKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLP 327

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV 
Sbjct: 328 DQPTETLLVLDGSTGQNALLQAKDFDKTTELTGLVLTKLDGSSKGGVVLAIRNEMNLPVK 387

Query: 288 FLGVGEGINDLEPFVAKDFS 307
            +G+GE   DL  F A +++
Sbjct: 388 LVGLGERAEDLADFDAANYA 407


>gi|293374743|ref|ZP_06621051.1| signal recognition particle-docking protein FtsY [Turicibacter
           sanguinis PC909]
 gi|325837606|ref|ZP_08166453.1| signal recognition particle-docking protein FtsY [Turicibacter sp.
           HGF1]
 gi|292646657|gb|EFF64659.1| signal recognition particle-docking protein FtsY [Turicibacter
           sanguinis PC909]
 gi|325490908|gb|EGC93207.1| signal recognition particle-docking protein FtsY [Turicibacter sp.
           HGF1]
          Length = 335

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/189 (49%), Positives = 128/189 (67%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VIL VGVNGVGKTT I K++ ++   G  V+LAAGDTFR+ AI+QL++W DR   D V  
Sbjct: 128 VILFVGVNGVGKTTSIAKIAHQLKGKGKSVLLAAGDTFRAGAIEQLQVWGDRIGVDVVSL 187

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             GSD +A+ ++A K+A+A+ VDVL+ DTAGRL N   LM  + K+ RV++R  P APH 
Sbjct: 188 SEGSDPSAVMFDAIKEAKARNVDVLLCDTAGRLQNKVNLMKELEKIKRVIEREVPGAPHD 247

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L V+DATTGQN + Q + F      +G+++TK+DGTA+GG ++ I     IP+ F+G+G
Sbjct: 248 TLLVIDATTGQNGMNQAKAFLEATDVSGIVLTKLDGTAKGGIVLAIRNEIGIPIKFVGLG 307

Query: 293 EGINDLEPF 301
           E   DL  F
Sbjct: 308 EKAEDLVHF 316


>gi|309806859|ref|ZP_07700846.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 03V1-b]
 gi|309809451|ref|ZP_07703309.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners SPIN 2503V10-D]
 gi|312874530|ref|ZP_07734555.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 2053A-b]
 gi|329921144|ref|ZP_08277666.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners SPIN 1401G]
 gi|308166725|gb|EFO68917.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 03V1-b]
 gi|308170123|gb|EFO72158.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners SPIN 2503V10-D]
 gi|311089921|gb|EFQ48340.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 2053A-b]
 gi|328934782|gb|EGG31273.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners SPIN 1401G]
          Length = 337

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109
           I +D+G   A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S     
Sbjct: 72  IEADVGYETAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 128

Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               P V L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R  
Sbjct: 129 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 188

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  
Sbjct: 189 VQVISGNTNADPSSVVYEGLECAVNNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 248

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P  P  +L V+D +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV
Sbjct: 249 PDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 308

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GE   DL  F A+ F+
Sbjct: 309 KLVGLGEKAEDLAEFDAEKFA 329


>gi|304436509|ref|ZP_07396483.1| cell division protein FtsY [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370555|gb|EFM24206.1| cell division protein FtsY [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 310

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/196 (52%), Positives = 135/196 (68%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VILVVG NGVGKTT IGKLS      G  V+LAA DTFR+AAI+QL++W  R     +
Sbjct: 102 PTVILVVGTNGVGKTTTIGKLSAYYRHQGKSVLLAAADTFRAAAIEQLEVWGKRADVQVI 161

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               GSD AA+ ++A + A+A++ +++I+DTAGRL   S LM  + K+ RV+ R  P AP
Sbjct: 162 KHGEGSDPAAVVFDALQAAKARRTELVIVDTAGRLQTKSNLMQELEKIYRVIGREVPGAP 221

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H  L VLDA TGQNA+ Q E+F  VA  TG+++TK+DGTA+GG  I I     IP+ ++G
Sbjct: 222 HETLLVLDAGTGQNAISQAELFSQVAPVTGVVLTKLDGTAKGGVTIGITAQLDIPIKWIG 281

Query: 291 VGEGINDLEPFVAKDF 306
           VGEGI+DL PF A+DF
Sbjct: 282 VGEGIDDLRPFHAEDF 297


>gi|256843375|ref|ZP_05548863.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
 gi|256614795|gb|EEU19996.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
          Length = 415

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/259 (38%), Positives = 153/259 (59%), Gaps = 5/259 (1%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           I SD+G   A+++ +EL     L    ++D   + ++  + +L  K      +   ++  
Sbjct: 149 IESDVGYETAEQLTDELREEAKLQNAKSRDELKRVIVEKLVDLYDKGGNSEDEQLTYNAE 208

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P+V L+VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL  W  R    
Sbjct: 209 AKPNVYLLVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVP 268

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V  +  +D A++ Y+A ++A  +K D L++DTAGRL N   LMA + K+ R +K+L P 
Sbjct: 269 VVTGKEKADPASVVYDATERAIREKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPD 328

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  
Sbjct: 329 QPTETLLVLDGSTGQNALLQAKDFDKTTELTGLVLTKLDGSSKGGVVLAIRNEMNLPVKL 388

Query: 289 LGVGEGINDLEPFVAKDFS 307
           +G+GE   DL  F A +++
Sbjct: 389 VGLGERAEDLADFDAANYA 407


>gi|237753290|ref|ZP_04583770.1| signal recognition particle protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375557|gb|EEO25648.1| signal recognition particle protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 296

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 169/298 (56%), Gaps = 11/298 (3%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           K F  T  K  + I D++   R     +E LE++LI +D+   + + I+  L  +    +
Sbjct: 4   KVFKKTLEKTTQNIRDLLPKAR-KKLSKEVLEEILIATDMDYDLVEMILSPLGNEISKNE 62

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           + V  +     E  +  +           S +P V L+VGVNG GKTT I KL+      
Sbjct: 63  LEVALLRLFRGESYYDKVQA------KKVSAKPCVDLIVGVNGAGKTTTIAKLANAYKKQ 116

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G  V+L AGDTFR+AAI+Q+K+W DR     V S+IG D +A+A++    A AK +DV I
Sbjct: 117 GKSVILGAGDTFRAAAIEQIKLWGDRLGVPVVASQIGHDPSAVAFDVITSAVAKNLDVAI 176

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAG 257
           IDTAGRLHN S L   + K++R+  +    APH  + +LD T G ++L Q ++F+  + G
Sbjct: 177 IDTAGRLHNQSNLQQELEKIVRICNKAKEGAPHRKILILDGTQGTSSLDQAKIFNQTLGG 236

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             G+I+TK+DGT++GG +  ++   ++P+ ++GVGEG  DL   VA D +A I   LD
Sbjct: 237 VDGVIITKLDGTSKGGAIFSMIYALRVPILYIGVGEGAEDL---VAFDENAYIQMLLD 291


>gi|239618078|ref|YP_002941400.1| signal recognition particle-docking protein FtsY [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506909|gb|ACR80396.1| signal recognition particle-docking protein FtsY [Kosmotoga olearia
           TBF 19.5.1]
          Length = 305

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/299 (43%), Positives = 193/299 (64%), Gaps = 12/299 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + ++ K+ +G   T   +   + +I+S  +LD    EELE+LLI SD+GV   ++++E L
Sbjct: 1   MGFLSKIKEGLKKTRDSVFSKVKNILSLEKLDAETLEELEELLILSDMGVETVEEVIERL 60

Query: 71  LTK-RYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             K +  KD   ++++VL D+  L  +       P       +P+V+L+VGVNG GKTT 
Sbjct: 61  KEKVKEVKDPNTALKKVLIDI--LKEEEEEKKEAP-------KPYVLLIVGVNGTGKTTT 111

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKLS+   + G +V+LAA DTFR+AA++QLK+W++R  ADF+    G+DAAA+AY+A  
Sbjct: 112 IGKLSRIFKEQGKRVVLAAADTFRAAAVEQLKVWSERVGADFISQGQGADAAAVAYDAVM 171

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A++K  D++IIDTAGRLH    LM  + K+ R + R+ P APH V  V+DATTGQN L 
Sbjct: 172 HAKSKGKDIVIIDTAGRLHTRHNLMEELKKVHRTIGRVLPGAPHDVWLVIDATTGQNGLV 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q + F      TG+++TK+DGTA+GG +  I    K PV ++GVGEG++DL+PF  ++F
Sbjct: 232 QAKKFAETVNITGIVLTKLDGTAKGGIVFAIKKELKTPVKYIGVGEGVDDLKPFDPEEF 290


>gi|237749681|ref|ZP_04580161.1| signal recognition particle protein [Helicobacter bilis ATCC 43879]
 gi|229374719|gb|EEO25110.1| signal recognition particle protein [Helicobacter bilis ATCC 43879]
          Length = 290

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 156/269 (57%), Gaps = 13/269 (4%)

Query: 49  LEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           LE++LI SDI   + +K+++ L     R A  V+++R     S           K    +
Sbjct: 28  LEEILIESDINYEIIEKMLDNLDENVSRDALRVAIERFFRGES--------YYDKIRFQE 79

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               P V LV GVNG GKTT I KL+K+  D   KV+L AGDTFR+AAI+QL++W+++  
Sbjct: 80  IEESPIVYLVFGVNGAGKTTTIAKLAKRFKDNNKKVILGAGDTFRAAAIEQLQLWSEKIG 139

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + V ++   D +ALA++    A+A+ +D  IIDTAGRL N + L   + K+ +   +  
Sbjct: 140 VEIVTTKHAHDPSALAFDTINAAKARNMDYAIIDTAGRLPNQTNLKNELIKISKTCSKAL 199

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            + P   + VLD T G +++ Q  +FH   G  G+I+TKMDGT++GG ++ I+   K+P+
Sbjct: 200 ENKPFHKILVLDGTQGSSSIEQARIFHEALGLDGIIITKMDGTSKGGAILSIIHEFKLPI 259

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLGVGE  ++L  F  KDF   I G LD
Sbjct: 260 LFLGVGEKADELIAFEEKDF---INGLLD 285


>gi|295693170|ref|YP_003601780.1| cell division protein, signal recognition particle (docking
           protein) ftsy [Lactobacillus crispatus ST1]
 gi|295031276|emb|CBL50755.1| Cell division protein, signal recognition particle (Docking
           protein) FtsY [Lactobacillus crispatus ST1]
          Length = 413

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 155/260 (59%), Gaps = 7/260 (2%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF 107
           I SD+G   A+++ +EL     L    ++D  ++RV+ + + +L  K      +   ++ 
Sbjct: 147 IESDVGYETAEQLTDELREEAKLQNAKSRD-DLKRVIVEKLVDLYDKGGNSEDEQLTYNA 205

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
             +P+V L VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL  W  R   
Sbjct: 206 EAKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDV 265

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V  +  +D A++ Y+A ++A  +K D L++DTAGRL N   LMA + K+ R +K+L P
Sbjct: 266 PVVTGKEKADPASVVYDATERAIGEKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLP 325

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV 
Sbjct: 326 DQPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVK 385

Query: 288 FLGVGEGINDLEPFVAKDFS 307
            +G+GE   DL  F A +++
Sbjct: 386 LVGLGERAEDLADFDAANYA 405


>gi|218283536|ref|ZP_03489526.1| hypothetical protein EUBIFOR_02116 [Eubacterium biforme DSM 3989]
 gi|218215804|gb|EEC89342.1| hypothetical protein EUBIFOR_02116 [Eubacterium biforme DSM 3989]
          Length = 319

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/281 (39%), Positives = 161/281 (57%), Gaps = 22/281 (7%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKD--------VSVQRVLYDVSEL 91
           +DD + E++  +L+ SD+G+  AQKIV+   +  ++ KD        +S+    YD S  
Sbjct: 45  IDDDLLEQIMVILLESDVGIHTAQKIVDAFESNGKHVKDYDSMLDYLISILYDFYDESS- 103

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                    +P   +    P VIL+VGVNG GKTT   KL +   + G KV +AA DTFR
Sbjct: 104 --------DEPIKIN-EEGPTVILMVGVNGSGKTTTSAKLIQYYKEQGKKVAVAAADTFR 154

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           + AIDQ+  WA+R     +  ++  D +++  +A + A+   VD+LI DTAGRL N + L
Sbjct: 155 AGAIDQIDTWANRLGVPCIKGKMNQDPSSVLVDACRYAKENDVDILICDTAGRLQNKTNL 214

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + KM RV++R    AP  V  VLDATTGQN + Q ++F      TG+++TKMDGTA+
Sbjct: 215 MNELSKMHRVVQREIEGAPQEVWLVLDATTGQNGISQAKVFLEATDVTGIVLTKMDGTAK 274

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           GG ++ I     +PV FLG+GE   DL PF   D +A + G
Sbjct: 275 GGVVLAIRDLLHLPVRFLGLGEKPADLRPF---DINAFLMG 312


>gi|269219657|ref|ZP_06163511.1| signal recognition particle-docking protein FtsY [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269210899|gb|EEZ77239.1| signal recognition particle-docking protein FtsY [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 405

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/299 (41%), Positives = 180/299 (60%), Gaps = 19/299 (6%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           GF +  LK       I+S   L     EE+ED L+ +D+G+    +I++ L  K+  K V
Sbjct: 118 GFGNALLK-------ILSRGDLSPADWEEIEDTLLMADVGLEATTQIMDNL--KKRTK-V 167

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSK 133
              R    V  ++ + L+ L  P      H       P  IL+VGVNG GKTT +GKL++
Sbjct: 168 EGTRDPERVKAILREELLELIDPAADRSLHLERIDGDPASILMVGVNGTGKTTTVGKLAR 227

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAK 192
            +   G +V+L A DTFR+AA DQL+ W +R   D V S+  G+D A++A++A  + +  
Sbjct: 228 VLVAEGSRVLLGAADTFRAAAADQLQTWGERVGVDVVRSDREGADPASVAFDAIDKGRET 287

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            VDV+++DTAGRL N S LM  +GK+ RV+ +  P   + VL VLDATTGQN +RQ E+F
Sbjct: 288 DVDVVLVDTAGRLQNKSGLMDELGKIKRVMSKRVPV--NEVLLVLDATTGQNGMRQAEVF 345

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             V G TG+++TK+DGTA+GG +I +     +PV F+G+GEG++DL PF A+ F   +T
Sbjct: 346 AEVTGITGIVLTKLDGTAKGGIVISVQRELGVPVKFVGLGEGVDDLAPFDAEGFVDALT 404


>gi|302191492|ref|ZP_07267746.1| signal recognition particle GTPase [Lactobacillus iners AB-1]
 gi|312871862|ref|ZP_07731946.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 3008A-a]
 gi|311092584|gb|EFQ50944.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 3008A-a]
          Length = 337

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109
           I +D+G   A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S     
Sbjct: 72  IEADVGYETAELLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 128

Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               P V L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R  
Sbjct: 129 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 188

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  
Sbjct: 189 VQVISGNTNADPSSVVYEGLECAVNNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 248

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P  P  +L V+D +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV
Sbjct: 249 PDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 308

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GE   DL  F A+ F+
Sbjct: 309 KLVGLGEKAEDLAEFDAEKFA 329


>gi|309808659|ref|ZP_07702551.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168133|gb|EFO70259.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 01V1-a]
          Length = 337

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109
           I +D+G   A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S     
Sbjct: 72  IEADVGYDTAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 128

Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               P V L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R  
Sbjct: 129 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 188

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  
Sbjct: 189 VQVISGNTNADPSSVVYEGLECAVKNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 248

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P  P  +L V+D +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV
Sbjct: 249 PDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 308

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GE   DL  F A+ F+
Sbjct: 309 KLVGLGEKAEDLAEFDAEKFA 329


>gi|307721358|ref|YP_003892498.1| signal recognition particle-docking protein FtsY [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979451|gb|ADN09486.1| signal recognition particle-docking protein FtsY [Sulfurimonas
           autotrophica DSM 16294]
          Length = 292

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 170/297 (57%), Gaps = 15/297 (5%)

Query: 20  GFASTSL-KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           GF   SL K  E I  +   +++    ++ELED+L+ +D+  A+ + I+ E+   +  ++
Sbjct: 3   GFIKKSLNKTVEAIKTVAPKKKIT-FTKDELEDILLEADVEYALVEIILNEIYQDKITRE 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           +   ++L  ++   +    P   P        P V L+VGVNG GKTT I KL+ K    
Sbjct: 62  ILRSKLLATLAYTSYTE--PQFTP--------PFVELIVGVNGAGKTTTISKLAYKYKQE 111

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G KV+L AGDTFR+AAI+QL +WA++     V S+ G D++A+AY+A   A+AK  D +I
Sbjct: 112 GKKVLLGAGDTFRAAAIEQLTLWANKLDIPIVASKQGHDSSAVAYDAIDSAKAKGFDNVI 171

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDTAGRLH  + L   + K+ R+  +    AP   + ++D T G +A+ Q + F+ + G 
Sbjct: 172 IDTAGRLHTQTNLANELKKIKRICDKAHKGAPQRTVLIIDGTQGNSAISQAKAFNEMIGI 231

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G+I+TK+DGTA+GG +  I    ++P+ ++G GE   +L  F   +F   + G LD
Sbjct: 232 DGIIITKLDGTAKGGSIFSIAYALELPILYVGTGEQPENLTSFDKYEF---VDGLLD 285


>gi|259501535|ref|ZP_05744437.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners DSM 13335]
 gi|259167053|gb|EEW51548.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners DSM 13335]
          Length = 345

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109
           I +D+G   A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S     
Sbjct: 80  IEADVGYETAELLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 136

Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               P V L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R  
Sbjct: 137 TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 196

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  
Sbjct: 197 VQVISGNTNADPSSVVYEGLECAVNNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 256

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P  P  +L V+D +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV
Sbjct: 257 PDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 316

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GE   DL  F A+ F+
Sbjct: 317 KLVGLGEKAEDLAEFDAEKFA 337


>gi|269127634|ref|YP_003301004.1| signal recognition particle-docking protein FtsY [Thermomonospora
           curvata DSM 43183]
 gi|268312592|gb|ACY98966.1| signal recognition particle-docking protein FtsY [Thermomonospora
           curvata DSM 43183]
          Length = 389

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/288 (41%), Positives = 173/288 (60%), Gaps = 15/288 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-H 93
           ++S   LD+   +E+ED LI +DIGVAVA++I E L T+     V   R   +V  L+  
Sbjct: 106 LLSRDTLDEDAWDEIEDTLISADIGVAVAREITEALRTR---VQVMGARTPEEVRALLRE 162

Query: 94  KMLMPLSKPFNWDFSHR---------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           ++L  ++  F+     R         P V++VVGVNG GKTT  GKL++ +   G  V+L
Sbjct: 163 ELLRQVTNGFDEKTDRRLRTARHGDRPAVVMVVGVNGTGKTTTCGKLARVLVGDGNTVLL 222

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            A DTFR+AA DQL+ W  R  A+ V    G+D  ++A++A +Q    KVD +IIDTAGR
Sbjct: 223 GAADTFRAAAADQLETWGKRVGAEVVRKGEGADPGSVAFDAVRQGIEGKVDTVIIDTAGR 282

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LH  + LM  +GK+ RV+++        VL VLDATTGQN ++Q  +F  V   TG+++T
Sbjct: 283 LHTKTGLMDELGKVKRVVEK--QATVDEVLLVLDATTGQNGMQQARVFAEVVNVTGIVLT 340

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           K+DGTA+GG +I +     +PV  +G+GEG +DL PF A+ F   I G
Sbjct: 341 KLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEAEPFVDAIIG 388


>gi|312984416|ref|ZP_07791751.1| signal recognition particle-docking protein FtsY [Lactobacillus
           crispatus CTV-05]
 gi|310894191|gb|EFQ43278.1| signal recognition particle-docking protein FtsY [Lactobacillus
           crispatus CTV-05]
          Length = 432

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 155/260 (59%), Gaps = 7/260 (2%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF 107
           I SD+G   A+++  EL     L    ++D  ++RV+ + + +L  K      +   ++ 
Sbjct: 166 IESDVGYETAEQLTNELREEAKLQNAKSRD-DLKRVIVEKLVDLYDKGGNSEDEQLTYNA 224

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
             +P+V L+VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL  W  R   
Sbjct: 225 EAKPNVYLLVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDV 284

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V  +  +D A++ Y+A ++A  +K D L++DTAGRL N   LMA + K+ R +K+L P
Sbjct: 285 PVVTGKEKADPASVVYDATERAIREKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLP 344

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV 
Sbjct: 345 DQPTETLLVLDGSTGQNALLQAKDFDKTTELTGLVLTKLDGSSKGGVVLAIRNEMNLPVK 404

Query: 288 FLGVGEGINDLEPFVAKDFS 307
            +G+GE   DL  F A +++
Sbjct: 405 LVGLGERAEDLADFDAANYA 424


>gi|309804312|ref|ZP_07698389.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 11V1-d]
 gi|309805486|ref|ZP_07699531.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 09V1-c]
 gi|308163715|gb|EFO65985.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 11V1-d]
 gi|308165137|gb|EFO67375.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 09V1-c]
          Length = 300

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 148/261 (56%), Gaps = 10/261 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---- 109
           I +D+G   A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S     
Sbjct: 35  IEADVGYETAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILK 91

Query: 110 ---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               P V L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R  
Sbjct: 92  TGDMPAVFLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVD 151

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +     +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  
Sbjct: 152 VQVISGNTNADPSSVVYEGLECAVKNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKI 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P  P  +L V+D +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV
Sbjct: 212 PDQPQEILLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPV 271

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GE   DL  F A+ F+
Sbjct: 272 KLVGLGEKAEDLAEFDAEKFA 292


>gi|227878858|ref|ZP_03996764.1| signal recognition particle docking protein FtsY [Lactobacillus
           crispatus JV-V01]
 gi|262046952|ref|ZP_06019912.1| cell division protein [Lactobacillus crispatus MV-3A-US]
 gi|227861549|gb|EEJ69162.1| signal recognition particle docking protein FtsY [Lactobacillus
           crispatus JV-V01]
 gi|260572934|gb|EEX29494.1| cell division protein [Lactobacillus crispatus MV-3A-US]
          Length = 415

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 155/260 (59%), Gaps = 7/260 (2%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF 107
           I SD+G   A+++ +EL     L    ++D  ++RV+ + + +L  K      +   ++ 
Sbjct: 149 IESDVGYETAEQLTDELREEAKLQNAKSRD-DLKRVIVEKLVDLYDKGGNSEDEQLTYNA 207

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
             +P+V L VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL  W  R   
Sbjct: 208 EAKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDV 267

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V  +  +D A++ Y+A ++A  +K D L++DTAGRL N   LMA + K+ R +K+L P
Sbjct: 268 PVVTGKEKADPASVVYDATERAIREKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLP 327

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV 
Sbjct: 328 DQPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVK 387

Query: 288 FLGVGEGINDLEPFVAKDFS 307
            +G+GE   DL  F A +++
Sbjct: 388 LVGLGERAEDLADFDAANYA 407


>gi|170079379|ref|YP_001736017.1| signal recognition particle-docking protein [Synechococcus sp. PCC
           7002]
 gi|169887048|gb|ACB00762.1| signal recognition particle-docking protein [Synechococcus sp. PCC
           7002]
          Length = 543

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 179/303 (59%), Gaps = 5/303 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E + W++KL  G   T   L   +  ++    L+D    E+E LL+++D+G+     I+E
Sbjct: 234 EEIEWLKKLRDGLGKTRRSLVNQLKAVVGQGPLNDEAVLEIESLLLQADVGIEATDYIIE 293

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVVGVNGVGK 124
            L  +   + +  +  +  + E++  +L  PL+K  + +F+      +V ++ GVNG GK
Sbjct: 294 TLQERLRQEALPPEAAIAYLKEILRDILDKPLAKLPSTEFAPEADKLNVWMLTGVNGAGK 353

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAY 183
           TT IGKL+   + +G + ++AA DTFR+AA++Q+K+W +RT    + +    +D AA+ +
Sbjct: 354 TTTIGKLAHLANQSGYRCVIAAADTFRAAAVEQVKVWGERTDTPVIANPGKNTDPAAVVF 413

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +    AQA++  +L++DTAGRL N   LM  + K+ R++ +  P A    L VLDAT GQ
Sbjct: 414 DGITAAQARQAQILLVDTAGRLQNKKNLMDELAKIRRIVDKKAPDAQVESLLVLDATLGQ 473

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N LRQ ++F   A  +G+++TK+DGTARGG  + +     +P+ F+G GEGI DL PF +
Sbjct: 474 NGLRQAQVFSEAAKLSGVVLTKLDGTARGGVALAVSQQLGLPIRFIGAGEGIEDLRPFSS 533

Query: 304 KDF 306
            +F
Sbjct: 534 YEF 536


>gi|293363566|ref|ZP_06610322.1| signal recognition particle-docking protein FtsY [Mycoplasma
           alligatoris A21JP2]
 gi|292552915|gb|EFF41669.1| signal recognition particle-docking protein FtsY [Mycoplasma
           alligatoris A21JP2]
          Length = 350

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/267 (38%), Positives = 159/267 (59%), Gaps = 6/267 (2%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKM 95
           ++D+   +ELE++LI SDI   +  KI+E++  +    ++     +  ++ D   LI+  
Sbjct: 66  KIDEDYFDELEEILIMSDINTELVFKIIEKIKKEVKTNNIDDPKLIGEIVADQMFLIYTN 125

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              ++   +   + R +VI++VGVNG GKTT I KL+ K    G KV++AA DTFR+ A+
Sbjct: 126 KTIVNTTLDIK-NDRLNVIVMVGVNGSGKTTSIAKLAYKYKQLGKKVIIAAADTFRAGAV 184

Query: 156 DQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           +QL +WA R   D V  +  G D +++ Y++   A     D+LIIDTAGRL N   LM  
Sbjct: 185 NQLDVWAQRIGVDIVKPDKEGQDPSSVVYKSLDVATKNDYDLLIIDTAGRLQNKINLMKE 244

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + KM  V+++    APH  L VLD TTGQN L Q  +F  V   +G+I+TKMDGT++GG 
Sbjct: 245 LEKMFSVIRKFVESAPHEALLVLDGTTGQNGLSQARVFKEVCELSGIILTKMDGTSKGGI 304

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
           ++ I     + V FLG+GE ++DL+ F
Sbjct: 305 VLSIKDEFDLNVKFLGLGEKLDDLKEF 331


>gi|256832211|ref|YP_003160938.1| signal recognition particle-docking protein FtsY [Jonesia
           denitrificans DSM 20603]
 gi|256685742|gb|ACV08635.1| signal recognition particle-docking protein FtsY [Jonesia
           denitrificans DSM 20603]
          Length = 391

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/302 (40%), Positives = 185/302 (61%), Gaps = 16/302 (5%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73
           +L    AS+   L + +  ++S   + D   +++EDLL+ +D+GV  A ++++ L T+  
Sbjct: 86  RLRHRLASSGSPLGQRLLVMLSQDHIADSDWDDIEDLLLMADLGVGPATELIDALRTRVR 145

Query: 74  -RYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS-----HRPHVILVVGVNGVGKTT 126
               KD    R L  V E +  ++ P L +  + D S     H P VI+VVGVNG GKTT
Sbjct: 146 VEAIKDPVALRAL--VREELLTLVDPTLDRSLHLDTSVSTPPHAPAVIVVVGVNGTGKTT 203

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEA 185
            IGKL++ +   G  V+L A DTFR+AA DQL+ W ++     V ++  G+D A++A++A
Sbjct: 204 TIGKLTRVLVAEGKDVLLGAADTFRAAAADQLQTWGEQVGVRTVRADRDGADPASVAFDA 263

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS-VLQVLDATTGQN 244
            +Q +   VDV+++DTAGRL N + LM  + K+ RV+ R    AP S VL VLDATTGQN
Sbjct: 264 VRQGRTNSVDVVVVDTAGRLQNKTGLMDELSKITRVITR---EAPISEVLLVLDATTGQN 320

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            + Q  +F  VAG TG+++TK+DGTARGG ++ +     +PV  +G+GEG +DL PF  +
Sbjct: 321 GMNQARVFSEVAGVTGIVLTKLDGTARGGIVVAVQRELGVPVKLVGLGEGPDDLAPFDPE 380

Query: 305 DF 306
           +F
Sbjct: 381 EF 382


>gi|182417262|ref|ZP_02948615.1| signal recognition particle-docking protein FtsY [Clostridium
           butyricum 5521]
 gi|237668131|ref|ZP_04528115.1| signal recognition particle-docking protein FtsY [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378908|gb|EDT76421.1| signal recognition particle-docking protein FtsY [Clostridium
           butyricum 5521]
 gi|237656479|gb|EEP54035.1| signal recognition particle-docking protein FtsY [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 302

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/256 (45%), Positives = 159/256 (62%), Gaps = 4/256 (1%)

Query: 56  SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           SDIG+     I+E L  K R  K    Q V   + E+I  +L+  S     D      V+
Sbjct: 49  SDIGMDTTIDIIERLRNKIRKEKINDPQEVKPALKEVIRDILLEGSYE---DNDEDKKVM 105

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L++GVNGVGKTT IGK++ K    G KV+LAA DTFR+AAIDQL++W+ R   D V  + 
Sbjct: 106 LIIGVNGVGKTTSIGKIAAKNKADGKKVLLAAADTFRAAAIDQLEVWSKRAEVDLVKHQE 165

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD AA+ ++A +  +A+KVD+LI DTAGRLHN   LM  + K+ R++ R         L
Sbjct: 166 GSDPAAVVFDAIEATKARKVDLLICDTAGRLHNKKNLMNELEKINRIIDRELSDYKKETL 225

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNA+ Q + F       G+I+TK+DGTA+GG +I I  +  IPV ++GVGEG
Sbjct: 226 LVLDATTGQNAVIQAKQFMEACPIDGIILTKLDGTAKGGVVISIKQSLNIPVRYIGVGEG 285

Query: 295 INDLEPFVAKDFSAVI 310
           I+DL+ F A+ F+  +
Sbjct: 286 IDDLQKFDAEGFAEAL 301


>gi|148655204|ref|YP_001275409.1| signal recognition particle-docking protein FtsY [Roseiflexus sp.
           RS-1]
 gi|148567314|gb|ABQ89459.1| signal recognition particle-docking protein FtsY [Roseiflexus sp.
           RS-1]
          Length = 326

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/266 (40%), Positives = 156/266 (58%), Gaps = 4/266 (1%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           D + ++LE LLI++D+GV     +V    TK       V+R       L  +M+  L + 
Sbjct: 55  DDLWDDLEALLIQADVGVETTMYLVNR--TKDRCNRYGVKRAREARDMLKAEMVRVLQEQ 112

Query: 103 FNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKI 160
                   RP++ILVVGVNG GKTT+I KL+ ++ +  G +V+LAAGDTFR+AA +QL+ 
Sbjct: 113 ERQPQIDARPYIILVVGVNGAGKTTLIAKLAYRLKNQFGRRVLLAAGDTFRAAATEQLET 172

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           WA+R     +    G+D  A+ Y+A +      VDVLIIDTAGRLH  + LM  + K+  
Sbjct: 173 WAERVGVPVISRGQGADPGAVVYDAIEAVSNGDVDVLIIDTAGRLHAKTNLMLELQKLRN 232

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           +++R  P APH VL V+DATTGQN + Q + F      T + +TK+DGTA+GG    I  
Sbjct: 233 IIRRRFPDAPHEVLLVIDATTGQNGVLQAKSFLKAVDVTHVAVTKLDGTAKGGIAFAIAQ 292

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDF 306
             + P+ ++G GE + DL  F A+ F
Sbjct: 293 DIERPIRYIGTGEKMTDLALFDAETF 318


>gi|315604552|ref|ZP_07879615.1| cell division protein FtsY [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313564|gb|EFU61618.1| cell division protein FtsY [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 412

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 180/302 (59%), Gaps = 16/302 (5%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           ++S  L   I  ++S  +L     EE+E+ L+ +D+G+     ++E L  +R A + +  
Sbjct: 113 ASSGALGRAILGVLSRGKLSAADWEEIEESLLVADLGLEATDSLMEAL-KRRVAVESTTD 171

Query: 83  RVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            V   V E++ + L+ L  P             D   +P VIL+VGVNG GKTT +GKL+
Sbjct: 172 EVR--VREILREELLALVGPDMDRSLDLARPTVDGCVKPAVILMVGVNGTGKTTTVGKLA 229

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQA 191
           + +      V+L A DTFR+AA DQL  W +R   D V SE  G+D A++A+EA ++   
Sbjct: 230 RILVADDKSVLLGAADTFRAAAADQLATWGERVGVDVVRSEREGADPASVAFEAVREGIE 289

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDV+++DTAGRL N S LM  +GK+ RV+ +  P A   VL VLDATTGQN ++Q E+
Sbjct: 290 RDVDVVLVDTAGRLQNKSTLMDELGKIKRVMSKQAPVA--EVLLVLDATTGQNGMKQAEV 347

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TG+++TK+DG+A+GG ++ +  +  +PV F+G+GEG +DL PF  + F   I 
Sbjct: 348 FAEATGVTGIVLTKLDGSAKGGIVVSVQRSLGVPVKFVGLGEGADDLAPFDPRGFVDAIV 407

Query: 312 GC 313
           G 
Sbjct: 408 GT 409


>gi|295111640|emb|CBL28390.1| signal recognition particle-docking protein FtsY [Synergistetes
           bacterium SGP1]
          Length = 309

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 179/304 (58%), Gaps = 6/304 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +++  +L +G      +   GI  + S    DD   EELED LI  D+GV +++++VE L
Sbjct: 1   MAFFARLKEGLKGVKERWSGGIARLFSGSSFDDAFWEELEDRLIAGDVGVELSEELVESL 60

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMP---LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
             +  A+ ++    L DV  E I   L+    + KPF  + +  P V+L+VGVNG GKTT
Sbjct: 61  KGEVRARGIASPEALRDVFVERITAELLSVPGMGKPFETEPA--PQVLLMVGVNGSGKTT 118

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL+ +    G  V+LAA DTFR+AA++QL+IW +R     V    GSD AA+A++A+
Sbjct: 119 SAGKLALQFKGQGKGVVLAAADTFRAAAVEQLQIWGERVGVRVVAQGQGSDPAAVAFDAW 178

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A++   D+LI+DTAGRLH+   LM  + K+ RVL R         + VLDA  GQN++
Sbjct: 179 QAARSAGADLLIVDTAGRLHDKHNLMEELRKIQRVLVREAGEDRVQTVLVLDAVLGQNSV 238

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q E F+++   + +++TK D TA+GG ++ I    +IPV  +G+GE   DL PF   +F
Sbjct: 239 AQAETFNSILPVSSIVLTKYDNTAKGGVVLAIARRLRIPVRCIGLGEAPEDLSPFDPAEF 298

Query: 307 SAVI 310
           +A +
Sbjct: 299 AAAL 302


>gi|210633181|ref|ZP_03297717.1| hypothetical protein COLSTE_01630 [Collinsella stercoris DSM 13279]
 gi|210159221|gb|EEA90192.1| hypothetical protein COLSTE_01630 [Collinsella stercoris DSM 13279]
          Length = 306

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 164/279 (58%), Gaps = 9/279 (3%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D+   EELED L+  D+G  +A ++ ++L      K++     L   + L  ++     
Sbjct: 28  VDESFWEELEDTLVMGDMGGEIAMRVTDDLRETAARKNLKTADQLR--AALAERLREFFV 85

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDTFRSAAIDQL 158
           +P +  F   P  +L VG+NG GKTT +GK++   ++A  G +V++ + DTFR+AAI+QL
Sbjct: 86  EPESDIFDDTPSCVLFVGINGAGKTTTVGKIASAEAEAHAGKRVVIGSADTFRAAAIEQL 145

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
            +W  R     +  + GSD A++ Y+   +A  +  D+++IDTAGRLH++  LM  + K+
Sbjct: 146 DVWGQRADVPVIKRDRGSDPASVCYDVLDEADKRGSDLVLIDTAGRLHSSPELMRELAKV 205

Query: 219 IRVL-KRLDPHA----PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
           ++V  KR +  A    P  V+ V+D+ TGQN L Q E F+   G  G+IMTK+DGTA+GG
Sbjct: 206 VKVTRKRAESCAAGPMPVHVVLVIDSATGQNGLVQAEEFNDALGLDGIIMTKLDGTAKGG 265

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             + +    K+P+Y +GVGE + DL+ F A DF   + G
Sbjct: 266 IALAVAEKLKLPIYRIGVGEQVEDLQRFDAADFCRALVG 304


>gi|187778956|ref|ZP_02995429.1| hypothetical protein CLOSPO_02551 [Clostridium sporogenes ATCC
           15579]
 gi|187772581|gb|EDU36383.1| hypothetical protein CLOSPO_02551 [Clostridium sporogenes ATCC
           15579]
          Length = 303

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/307 (42%), Positives = 188/307 (61%), Gaps = 26/307 (8%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +  KL +G   T    K+G TD ISS       +D+ + EELE++L+ +DIGV  + KI+
Sbjct: 5   FFDKLKEGLTKT----KDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKII 60

Query: 68  EEL---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + L   + +   KD +     ++RV+ ++       + P            P V+LV+GV
Sbjct: 61  DRLRERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITP---------DTTPKVMLVIGV 111

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGK+S K+ D G KV++AA DTFR+AAIDQL++W+ R   D +  + GSD  
Sbjct: 112 NGVGKTTSIGKVSAKLKDQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPG 171

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A + A+++K DVLI DTAGRLHN   LM  + K+ ++L+R    A    L VLDA
Sbjct: 172 AVVFDAVQAAKSRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDA 231

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F +     G+I+TK+DGTA+GG +I I     IPV  +GVGEGI+DL+
Sbjct: 232 TTGQNAVIQAKEFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIDDLQ 291

Query: 300 PFVAKDF 306
            F  ++F
Sbjct: 292 EFNPEEF 298


>gi|315655726|ref|ZP_07908624.1| cell division protein FtsY [Mobiluncus curtisii ATCC 51333]
 gi|315489790|gb|EFU79417.1| cell division protein FtsY [Mobiluncus curtisii ATCC 51333]
          Length = 596

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 181/305 (59%), Gaps = 14/305 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S +R+L +  A    K    I +++S+  L+D   E +ED L+ +D+GV    +++ +L 
Sbjct: 291 SRLRRLKERLAGKG-KFGRAILNVLSNADLEDSDWEAIEDELLAADLGVEPTVELIGKLK 349

Query: 72  TKRY---AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            K+     KD +      +R+L D+ +   +  + L  P   D   +   +L+VGVNG G
Sbjct: 350 VKQKVAGEKDATQVRRMAKRMLTDMLDRKAERRLNLEVP--EDSPTQTAGVLLVGVNGGG 407

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALA 182
           KTT +GKL++ +      V+L A DTFR+AA +QL+ W DR     V +E   +D A++A
Sbjct: 408 KTTTVGKLARLLVAERKTVVLGAADTFRAAAGEQLQTWGDRVGVPVVRAEKDQADPASVA 467

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K A+    DV++IDTAGRL N   LM  +GK+ RV ++  P     VL V+DATTG
Sbjct: 468 FDAAKAAREAGSDVVVIDTAGRLQNKVGLMDELGKIKRVAEKQVPIT--EVLLVIDATTG 525

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q ++F    G TG+++TK+DG+A+GG ++P+     IPV  +G+GEG +DL PFV
Sbjct: 526 QNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVIVPLQRELGIPVKLVGLGEGPDDLAPFV 585

Query: 303 AKDFS 307
             DF+
Sbjct: 586 PGDFA 590


>gi|15829145|ref|NP_326505.1| cell division protein FTSY [Mycoplasma pulmonis UAB CTIP]
 gi|14090089|emb|CAC13847.1| CELL DIVISION PROTEIN FTSY [Mycoplasma pulmonis]
          Length = 373

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/318 (34%), Positives = 185/318 (58%), Gaps = 12/318 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVA 61
           +QK     L  ++K   G   ++    + I ++ ++  +LDD   EELE++LI SDI   
Sbjct: 50  DQKKEIAQLESVQKFVTGLNKSNSNFSKAILELQNNHVKLDDDFFEELEEILIMSDISAK 109

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM-LMPLSKPF---NWDFS-HRPHVILV 116
           +A  I++E+  +   +++   +++ ++  ++ KM L+  +K F   N ++   R +V L+
Sbjct: 110 LALLIIDEIQREVKIQNIDDPKIISEI--IVDKMFLIYANKSFIDINLNYQEQRMNVFLM 167

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEIG 175
           VGVNG GKTT I K++K+  D   K+++ AGDTFR+AA +QL+IWA+R   + F  S+  
Sbjct: 168 VGVNGSGKTTSIAKIAKRYKDLQKKILIIAGDTFRAAASEQLEIWANRVGVEIFKASQKN 227

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            + A++ Y+  + A+    D++IIDTAGRL N   LM  + K+ +++ +    +    L 
Sbjct: 228 QEPASVVYQGLEYAKNNNFDLVIIDTAGRLQNKINLMNELEKINKIINKFIGRSVDESLL 287

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN + Q   F  V   TG+++TKMDGT++GG ++ I     + V  +G+GE +
Sbjct: 288 VIDATTGQNGVSQARSFKEVTNLTGIVLTKMDGTSKGGIVLSIKDEFDLNVKLIGLGEKM 347

Query: 296 NDLEPFVAKDFSAVITGC 313
           +DL  F   D  + I G 
Sbjct: 348 DDLVDF---DLDSFIYGM 362


>gi|238926795|ref|ZP_04658555.1| signal recognition particle-docking protein FtsY [Selenomonas
           flueggei ATCC 43531]
 gi|238885327|gb|EEQ48965.1| signal recognition particle-docking protein FtsY [Selenomonas
           flueggei ATCC 43531]
          Length = 310

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/196 (52%), Positives = 134/196 (68%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VILVVG NGVGKTT IGKLS      G  V+LAA DTFR+AAI+QL++W  R     +
Sbjct: 102 PTVILVVGTNGVGKTTTIGKLSAYYRHQGKSVLLAAADTFRAAAIEQLEVWGKRADVQVI 161

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               GSD AA+ ++A + A+A++ +++I+DTAGRL   S LM  + K+ RV+ R  P AP
Sbjct: 162 KHGEGSDPAAVVFDALQAARARRTELVIVDTAGRLQTKSNLMQELEKIYRVIGREVPGAP 221

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H  L VLDA TGQNA+ Q E+F   A  TG+++TK+DGTA+GG  I I     IP+ ++G
Sbjct: 222 HETLLVLDAGTGQNAISQAELFSQAAPVTGVVLTKLDGTAKGGVTIGITAQLNIPIKWIG 281

Query: 291 VGEGINDLEPFVAKDF 306
           VGEGI+DL PF A+DF
Sbjct: 282 VGEGIDDLRPFHAEDF 297


>gi|113474581|ref|YP_720642.1| signal recognition particle-docking protein FtsY [Trichodesmium
           erythraeum IMS101]
 gi|110165629|gb|ABG50169.1| signal recognition particle-docking protein FtsY [Trichodesmium
           erythraeum IMS101]
          Length = 553

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/320 (35%), Positives = 188/320 (58%), Gaps = 12/320 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V++E ++W++KL +G   T   L   +  I+    L+     E+E +L+++D+GV    
Sbjct: 234 QVSAEEITWLKKLRQGLDRTRRNLLNQLKAIVGQGPLNQDAVMEIESMLLQADVGVEATD 293

Query: 65  KIVEELLTKRYAKDVSVQ-------RVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVI 114
            I+E L  K  ++ + ++       ++L D+ +   K L   S  +N  F       ++ 
Sbjct: 294 YIIETLQNKLRSEALPLKEAIAYLKKILRDILDEPFKDLEVASAAYNLTFVPEKDSLNIW 353

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE- 173
           L+ GVNG GKTT IGK++   + +  K ++AA DTFR+AA++QL IW  R+  + + +  
Sbjct: 354 LLNGVNGAGKTTTIGKIAHLATKSDYKCLIAAADTFRAAAVEQLTIWGQRSEVEVIANPG 413

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +D AA+ ++A   AQ++  ++L++DTAGRL N   LM  + K+ R++ R  P A    
Sbjct: 414 KNTDPAAIVFDAILAAQSRNTELLLVDTAGRLQNKKNLMDELSKIHRIVNRKAPDAVVES 473

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLDAT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+GVGE
Sbjct: 474 LLVLDATLGQNGLRQAEVFAKAAKLSGVVLTKLDGTAKGGVALAVVKQLGLPIRFIGVGE 533

Query: 294 GINDLEPFVAKDF-SAVITG 312
            I DL PF + +F  A+I+G
Sbjct: 534 KIEDLRPFSSYEFVEALISG 553


>gi|302389627|ref|YP_003825448.1| signal recognition particle-docking protein FtsY
           [Thermosediminibacter oceani DSM 16646]
 gi|302200255|gb|ADL07825.1| signal recognition particle-docking protein FtsY
           [Thermosediminibacter oceani DSM 16646]
          Length = 298

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/297 (41%), Positives = 181/297 (60%), Gaps = 5/297 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +  A T   L E +  ++  S ++D+   EELE++LI +DIGV   +K++  
Sbjct: 1   MGFFERLKQSLAKTRNSLAEKVESLLKFSTKIDEETLEELEEILITADIGVDATEKLISR 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  K  A+ +     L +   L ++++    +P  +D    P VIL+VGVNGVGKTT IG
Sbjct: 61  LREKVKAEKIKSPEELKEA--LKNEIIKVFPEP-KFDIIP-PSVILIVGVNGVGKTTTIG 116

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K    G KV+LAA DTFR+AA +QL IW  R   D +  + GSD A++ ++A +  
Sbjct: 117 KLAFKFKSEGKKVILAAADTFRAAATEQLSIWGQRVGVDVIKHQEGSDPASVLFDAIQAG 176

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ D++I DTAGRLH    LM  + K+ RV ++  P A  S L VLDATTGQNA+ Q 
Sbjct: 177 KARRADIIICDTAGRLHTRKNLMEELKKLYRVSEKEYPEARISSLLVLDATTGQNAIAQA 236

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            +F      +G+I+TK+DGTA+GG  + I     +PV F+GVGEG++DL+ F  K F
Sbjct: 237 RIFKEAVNISGIILTKLDGTAKGGVAVAIASELNLPVLFVGVGEGVDDLQEFDPKAF 293


>gi|291550079|emb|CBL26341.1| signal recognition particle-docking protein FtsY [Ruminococcus
           torques L2-14]
          Length = 313

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 128/319 (40%), Positives = 189/319 (59%), Gaps = 12/319 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  E   + ++L  G   T   +  G+  I     ++DD   EELE+ LI  D+GV    
Sbjct: 1   MGEEKKGFFKRLVSGLTKTRDNIVSGMDSIFHGFSKIDDDFYEELEETLIMGDLGVRATM 60

Query: 65  KIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            I+E+L  K   ++ K+    R L  +  +  +M +  +    ++F +R  V+ V+GVNG
Sbjct: 61  DIIEDLKVKVKEQHIKEPIECRQLV-IDSIREQMDVGETA---YEFENRQSVVFVIGVNG 116

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ K+     KV+LAA DTFR+AA +QLK W++R   + +  + G+D A++
Sbjct: 117 VGKTTTIGKLAGKLKAQNKKVILAAADTFRAAAGEQLKEWSNRAGVEMIGGQEGADPASV 176

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A   A+A++ DVL+ DTAGRLHN   LM  + K+ RV+ R  P A    L VLDATT
Sbjct: 177 VYDAVAAAKARRADVLLCDTAGRLHNKKNLMEELKKINRVIDREYPDAFRETLVVLDATT 236

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + F+ V   TG+++TKMDGTA+GG  + I     IPV ++GVGE I+DL+ F
Sbjct: 237 GQNALAQAKEFNEVTDITGIVLTKMDGTAKGGIAVAIQSELGIPVKYIGVGETIDDLQKF 296

Query: 302 VAKDFSAVITGCLDYGEEK 320
            +++F       L Y EE+
Sbjct: 297 DSEEF----VNALFYREEE 311


>gi|292670931|ref|ZP_06604357.1| signal recognition particle-docking protein FtsY [Selenomonas noxia
           ATCC 43541]
 gi|292647552|gb|EFF65524.1| signal recognition particle-docking protein FtsY [Selenomonas noxia
           ATCC 43541]
          Length = 311

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 124/302 (41%), Positives = 180/302 (59%), Gaps = 3/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L KG A T     + I   II    +DD + ++LE+ L+ +D+GV   + ++  
Sbjct: 1   MGFFDRLKKGLAKTRENFTQNIERLIIGYADIDDELIDDLEETLLMADVGVKTTEMLISA 60

Query: 70  LLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +      K++     L    E  I ++L    K F+      P V+LVVG NGVGKTT I
Sbjct: 61  VRKGIKEKEIQTPEDLIPFLEKEIVRILESGEKTFHMA-EQGPTVLLVVGTNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS      G  V+LAA DTFR+AAIDQL+IW  R  A  +     SD AA+ ++A + 
Sbjct: 120 GKLSAYYRRQGKSVLLAAADTFRAAAIDQLEIWGKRADAQVIKHGENSDPAAVVFDALQA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +D++I+DTAGRL   S LM  + K+ RV+ R  P APH  L VLDA TGQNA+ Q
Sbjct: 180 AKARNIDIVIVDTAGRLQTKSNLMQELEKIYRVIGREIPGAPHETLLVLDAGTGQNAISQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E+F   A  +G+++TK+DGTA+GG  I I     IP+ ++GVGEG++DL PF A++F +
Sbjct: 240 AEIFTQAAPVSGVVLTKLDGTAKGGVTIGIKSQLSIPIKWIGVGEGMDDLRPFHAEEFVS 299

Query: 309 VI 310
            +
Sbjct: 300 AL 301


>gi|154148594|ref|YP_001406877.1| signal recognition particle-docking protein FtsY [Campylobacter
           hominis ATCC BAA-381]
 gi|153804603|gb|ABS51610.1| signal recognition particle-docking protein FtsY [Campylobacter
           hominis ATCC BAA-381]
          Length = 288

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 166/289 (57%), Gaps = 25/289 (8%)

Query: 28  LKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
            K+G+   I+S +  +       +E LED+L+ +D+   + ++I+  L  +   K   ++
Sbjct: 5   FKKGLEKTINSMKFANAGKNKISKEILEDMLLEADVDYDIVEEILYYLPPQDDVKKDDLK 64

Query: 83  RVL-----YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           RV+     Y+  E+      P SKPF         V L++GVNG GKTT I KL+     
Sbjct: 65  RVMNTYFKYESPEI------PQSKPF---------VELILGVNGAGKTTSIAKLANLYKK 109

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           +G  V+L A DTFR+ AI+QLK+WA++     V +  G D AA+A++    A AKK+D +
Sbjct: 110 SGKSVILGACDTFRAGAIEQLKLWAEKIEVPIVATAQGHDPAAVAFDTISSAVAKKIDNV 169

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDTAGRL N   L   + K++R+  +    APH  + +LDAT G N++ Q + F+ +A 
Sbjct: 170 LIDTAGRLQNQKNLAKELEKIVRISAKALSSAPHRKIIILDATQGNNSVIQAKAFNEIAK 229

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             G+I+TK+DGT +GG L  I    +IP+ ++GVGE + DL  F A++F
Sbjct: 230 IDGIIITKLDGTPKGGALFGIARELEIPILYIGVGEKMEDLIEFNAQNF 278


>gi|320161066|ref|YP_004174290.1| cell division protein FtsY [Anaerolinea thermophila UNI-1]
 gi|319994919|dbj|BAJ63690.1| cell division protein FtsY [Anaerolinea thermophila UNI-1]
          Length = 306

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 113/289 (39%), Positives = 175/289 (60%), Gaps = 14/289 (4%)

Query: 32  ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL 91
           I  +  + +++    EELE +L+++D+G+   ++I++ L      K   VQ  L    EL
Sbjct: 23  IATLFGATQINTETWEELEAILVQADLGIETTEEIIQAL------KQHVVQEGLTRTEEL 76

Query: 92  IHKMLMPLSKPFN----WDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            H +   L +  +     DFS+ +P +IL+VGVNG GKTT   KL  + S AG  V+LAA
Sbjct: 77  QHALREVLIQRLDPTPVVDFSYQKPAIILLVGVNGSGKTTTAAKLGWQFSRAGKTVLLAA 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+AA+DQL++W +R     +  +  +D AA+A++A + A +KK+D++++DTAGRLH
Sbjct: 137 ADTFRAAAVDQLQVWGERLGLPVIAGQPNADPAAVAFDAIQSAISKKIDIVLVDTAGRLH 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
               LM  + K+ RV+ +  P APH+V  VLDATTGQNAL+Q + F      TG+I++K+
Sbjct: 197 TRYNLMEELKKIHRVVGKALPGAPHAVWLVLDATTGQNALQQAKAFKEAVQVTGIILSKL 256

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           D +ARGG    I  +  +P+ + G+GE   DL+ F   D  A + G L+
Sbjct: 257 DSSARGGMAFAIQESLGLPILYAGLGEKPEDLQVF---DREAFVNGILE 302


>gi|224373550|ref|YP_002607922.1| signal recognition particle-docking protein FtsY [Nautilia
           profundicola AmH]
 gi|223588955|gb|ACM92691.1| signal recognition particle-docking protein FtsY [Nautilia
           profundicola AmH]
          Length = 289

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 104/299 (34%), Positives = 169/299 (56%), Gaps = 15/299 (5%)

Query: 20  GFASTSL-KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           GF    L K KE +  ++ S + +   ++ +E+ L+ +D+   + +KI+      R  ++
Sbjct: 3   GFIKKGLNKTKEALKSVVGSEKKEKLPKDLIEEALLEADMDYDLVEKIIN-----RLPEE 57

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           V+ ++       L  ++    S P N  + + +P   L++GVNG GKTT I KL+ K   
Sbjct: 58  VTKEK-------LKKELAWVFSVPKNDIEINDKPFTFLIIGVNGAGKTTTIAKLAHKFKS 110

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            G  V+L A DTFR+AAI+QL  WA+      V ++ G D AA+ Y+    A+AK +D+ 
Sbjct: 111 EGKSVILGAADTFRAAAIEQLTKWAEILDVPIVKTKQGHDPAAVTYDTIASAKAKGIDIA 170

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           IIDTAGRLHN   L   + K++ V K+   +APH ++ ++D T G +A+ Q ++F  + G
Sbjct: 171 IIDTAGRLHNKVNLQNELKKIVNVAKKAYENAPHKIVLIIDGTQGSSAINQAKVFKEIVG 230

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-SAVITGCLD 315
             G+I+TK+DGTA+GG +  I    ++P+ F+GVGE   DL  F   +F   ++ G  D
Sbjct: 231 VDGVIITKLDGTAKGGSIFTIGHELQLPILFVGVGEKPEDLVKFDKNEFIEGILEGLYD 289


>gi|22298471|ref|NP_681718.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22294651|dbj|BAC08480.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 458

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 184/311 (59%), Gaps = 11/311 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++V  E ++W+++L +G   T   L   +  I+    L     E +E LL+++D+GV   
Sbjct: 138 EEVDLEEITWLQRLRQGLGKTRRGLVHQLRAIVGQGPLSRDAVEAIEMLLLQADVGVKAT 197

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--P-----HVILV 116
           ++I+  L TK   + +   + +  + E++  +L    +PF   +     P     ++ L+
Sbjct: 198 EQIIAALQTKIRQETLPADQAIAYLKEILRDIL---DRPFQQGYRRNCAPKKGTLNIWLI 254

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IG 175
            GVNGVGKTT IGKL+   + +G + ++AA DTFR+AA +Q+KIW  R++ + + +    
Sbjct: 255 AGVNGVGKTTTIGKLAHIATQSGYRCLIAAADTFRAAATEQVKIWGQRSNVEVIANPGKN 314

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D AA+ ++A   AQA+  ++L++DTAGRL N + LM  + K+ R++ +    A    L 
Sbjct: 315 TDPAAVVFDAIGAAQARGTELLLVDTAGRLQNKANLMEELKKIRRIIDKRAGDAQIESLL 374

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDAT GQN LRQ ++F   A  TG+I+TK+DGTA+GG  + +V    +P+ F+G GEGI
Sbjct: 375 VLDATLGQNGLRQAQVFAEAAQLTGVILTKLDGTAKGGVALAVVQELGLPIRFIGAGEGI 434

Query: 296 NDLEPFVAKDF 306
            DL PF + +F
Sbjct: 435 KDLRPFSSFEF 445


>gi|229815431|ref|ZP_04445763.1| hypothetical protein COLINT_02479 [Collinsella intestinalis DSM
           13280]
 gi|229808964|gb|EEP44734.1| hypothetical protein COLINT_02479 [Collinsella intestinalis DSM
           13280]
          Length = 304

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/281 (35%), Positives = 163/281 (58%), Gaps = 15/281 (5%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D+G  E+LED L+  D+G  +A ++ ++L      ++ + ++ L    +L   +   L 
Sbjct: 28  VDEGFWEDLEDTLVMGDMGGEIAMRVTDDL------RETAARKNLKTADQLRGALAERLC 81

Query: 101 KPFNWD----FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           + F       F   P  +L VG+NG GKTT +GK++   + AG  V++ + DTFR+AAI+
Sbjct: 82  EFFVESESDIFDDTPSCVLFVGINGAGKTTTVGKIASAEAGAGKNVVIGSADTFRAAAIE 141

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL +W +R     +  + GSD A++ Y+   QA     D+++IDTAGRLH++  LM  + 
Sbjct: 142 QLDVWGERAGVPVIKRDRGSDPASVCYDVLDQADKLASDLVLIDTAGRLHSSPELMRELA 201

Query: 217 KMIRVL-KRLDPHA----PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           K+++V  KR +  A    P  V+ V+D+ TGQN L Q + F+   G  G+IMTK+DGTA+
Sbjct: 202 KVVKVTRKRAESCAAGPMPVHVVLVIDSATGQNGLAQAQEFNEALGLDGIIMTKLDGTAK 261

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           GG  + +    K+P+Y +GVGE + DL+ F A  F   + G
Sbjct: 262 GGIALAVAEQLKLPIYRIGVGEQVEDLQRFDASSFCRALVG 302


>gi|315656360|ref|ZP_07909249.1| cell division protein FtsY [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492919|gb|EFU82521.1| cell division protein FtsY [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 596

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 181/305 (59%), Gaps = 14/305 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S +R+L +  A    K    I +++S+  L++   E +ED L+ +D+GV    +++ +L 
Sbjct: 291 SRLRRLKERLAGKG-KFGRAILNVLSNADLEESDWEAIEDELLAADLGVEPTVELIGKLK 349

Query: 72  TKRYA---KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            K+     KD +      +R+L D+ +   +  + L  P   D   +   IL+VGVNG G
Sbjct: 350 VKQKVAGEKDATQVRRMAKRMLTDMLDRKAERRLNLEVP--EDSPTQTAGILLVGVNGGG 407

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALA 182
           KTT +GKL++ +      V+L A DTFR+AA +QL+ W DR     V +E   +D A++A
Sbjct: 408 KTTTVGKLARLLVAERKTVVLGAADTFRAAAGEQLQTWGDRVGVPVVRAEKDQADPASVA 467

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K A+    DV++IDTAGRL N   LM  +GK+ RV ++  P     VL V+DATTG
Sbjct: 468 FDAAKAAREAGSDVVVIDTAGRLQNKVGLMDELGKIKRVAEKQVPIT--EVLLVIDATTG 525

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q ++F    G TG+++TK+DG+A+GG ++P+     IPV  +G+GEG +DL PFV
Sbjct: 526 QNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVIVPLQRELGIPVKLVGLGEGPDDLAPFV 585

Query: 303 AKDFS 307
             DF+
Sbjct: 586 PGDFA 590


>gi|297623514|ref|YP_003704948.1| signal recognition particle-docking protein FtsY [Truepera
           radiovictrix DSM 17093]
 gi|297164694|gb|ADI14405.1| signal recognition particle-docking protein FtsY [Truepera
           radiovictrix DSM 17093]
          Length = 314

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 127/320 (39%), Positives = 181/320 (56%), Gaps = 22/320 (6%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +SW  +L +G   T   L   + D+ S   +     ++LE  LI +D G  +A ++V E 
Sbjct: 1   MSWFDRLKRGLGKTRDVLTTDVRDLGSVWEMP---WDDLEFALIGADTGSKIAAEVVAEA 57

Query: 71  LTKRYAKDVS----VQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVI-------LVVG 118
             +R  + VS    +++ L D  E   +M   L +  F  D +   H +       +VVG
Sbjct: 58  KRER-ERGVSFREALEKALLDQLE-PDRMRQKLRRVGFTLDVTR--HTVEVRGSVVMVVG 113

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT I KL +  ++ G +VM AAGDTFR+AA  QL++W +R     V    GSD 
Sbjct: 114 VNGVGKTTTIAKLGQYYTERGRRVMFAAGDTFRAAATAQLEVWGERLGIPTVTGPDGSDP 173

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            A+A+ A +Q +A+  D+L +DTAGRLH    LM  + K+ RV+ + DP  P  V  VLD
Sbjct: 174 GAVAFNAAQQRRARGYDLLFVDTAGRLHTKHNLMEELKKVKRVIAKADPDEPKEVWLVLD 233

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQN L Q + FH   G TG+I+TK+DGTA+GG L+PIV    +P+ F+GVGE   DL
Sbjct: 234 AVTGQNGLAQAKKFHEAVGLTGVIVTKLDGTAKGGILLPIVRELGLPIKFIGVGEKAEDL 293

Query: 299 EPFVAKDFSAVITGCLDYGE 318
           +P+   D +A +   LD  E
Sbjct: 294 QPY---DAAAYVRALLDMPE 310


>gi|304390863|ref|ZP_07372815.1| cell division protein FtsY [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304325746|gb|EFL92992.1| cell division protein FtsY [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 596

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 181/305 (59%), Gaps = 14/305 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S +R+L +  A    K    I +++S+  L++   E +ED L+ +D+GV    +++ +L 
Sbjct: 291 SRLRRLKERLAGKG-KFGRAILNVLSNADLEESDWEAIEDELLAADLGVEPTVELIGKLK 349

Query: 72  TKRYA---KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            K+     KD +      +R+L D+ +   +  + L  P   D   +   IL+VGVNG G
Sbjct: 350 VKQKVAGEKDATQVRRMAKRMLTDMLDRKAERRLNLEVP--EDSPTQTAGILLVGVNGGG 407

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALA 182
           KTT +GKL++ +      V+L A DTFR+AA +QL+ W DR     V +E   +D A++A
Sbjct: 408 KTTTVGKLARLLVAERKTVVLGAADTFRAAAGEQLQTWGDRVGVPVVRAEKDQADPASVA 467

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K A+    DV++IDTAGRL N   LM  +GK+ RV ++  P     VL V+DATTG
Sbjct: 468 FDAAKAAREAGSDVVVIDTAGRLQNKVGLMDELGKIKRVAEKQVPIT--EVLLVIDATTG 525

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q ++F    G TG+++TK+DG+A+GG ++P+     IPV  +G+GEG +DL PFV
Sbjct: 526 QNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVIVPLQRELGIPVKLVGLGEGPDDLAPFV 585

Query: 303 AKDFS 307
             DF+
Sbjct: 586 PGDFA 590


>gi|308806441|ref|XP_003080532.1| chloroplast SRP receptor cpFtsY precursor (ISS) [Ostreococcus
           tauri]
 gi|116058992|emb|CAL54699.1| chloroplast SRP receptor cpFtsY precursor (ISS) [Ostreococcus
           tauri]
          Length = 354

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 98/200 (49%), Positives = 134/200 (67%), Gaps = 7/200 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VI+VVGVNG GKTT +GKLS + +++G KVM+  GDTFR+AA +QL  WA+RT A   
Sbjct: 149 PSVIMVVGVNGGGKTTTLGKLSHRFAESGAKVMMVPGDTFRAAAAEQLATWAERTGAVMS 208

Query: 171 CSEIGSDAAALAYEAFKQAQAK-KVDVLIIDTAGRLHNNSILM---AGIGKMIRVLKRLD 226
            S   +   A+ ++A  +A A+  +D+++ DT+GRLHNN+ LM    G+ K I   KR++
Sbjct: 209 DSPPNTKPGAVCFKAVDEACARGDIDIVLADTSGRLHNNTQLMDELVGVRKSIS--KRME 266

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             APH VL VLD TTG N L Q  +F    G TG+I+TK+DGTARGG ++ +V    IPV
Sbjct: 267 -GAPHEVLLVLDGTTGLNMLNQARVFGEAVGVTGIILTKLDGTARGGAVVSVVDELGIPV 325

Query: 287 YFLGVGEGINDLEPFVAKDF 306
            F+GVGE + DL+ F A+ F
Sbjct: 326 KFIGVGEAMEDLQSFEAESF 345


>gi|322434661|ref|YP_004216873.1| signal recognition particle-docking protein FtsY [Acidobacterium
           sp. MP5ACTX9]
 gi|321162388|gb|ADW68093.1| signal recognition particle-docking protein FtsY [Acidobacterium
           sp. MP5ACTX9]
          Length = 338

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/319 (37%), Positives = 174/319 (54%), Gaps = 9/319 (2%)

Query: 3   NQKVASESLSWIRK-LTKGFASTSLKLKEGITDIIS-----SRRLDDGVREELEDLLIRS 56
            Q  ASE +   R+ L         + +E  +D I      +R +D+    +LE +L+ +
Sbjct: 23  TQTPASEEIDPPRRGLFDRMRQAVTRTRESFSDSIGQVLALTREVDESTLIDLEPILLAA 82

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           DIG A    ++E L  +   K +     L ++  +  K ++             P VI++
Sbjct: 83  DIGSATTAIVLENLRQRALRKGIEGGSELKELLRVELKSILDGVSQQTIPAVAAPEVIMM 142

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT  GKL+         V+L A DTFR+AAI+QL++WA R+    + ++ G 
Sbjct: 143 VGVNGTGKTTTTGKLAAYFRRQNRTVLLCAADTFRAAAIEQLEVWATRSDVPIIKTKQGG 202

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D +A  Y+A   A+A+   VLI+DTAGRLH  S LM  + KM R  +RL P APH    V
Sbjct: 203 DPSAALYDACTAAKARGTQVLIVDTAGRLHTKSDLMKELDKMRRTAERLVPGAPHQTFLV 262

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DATTGQN L+Q  +F   A  TG+++TK+DGTA+GG ++ I    K+PV + G GE I+
Sbjct: 263 MDATTGQNGLQQARLFTEAARVTGIVLTKLDGTAKGGIVLAIATELKLPVVYAGTGEKID 322

Query: 297 DLEPFVAKDFSAVITGCLD 315
           DL PF   D S  I   LD
Sbjct: 323 DLIPF---DSSTFIDSLLD 338


>gi|238852589|ref|ZP_04642999.1| signal recognition particle GTPase [Lactobacillus gasseri 202-4]
 gi|238834735|gb|EEQ26962.1| signal recognition particle GTPase [Lactobacillus gasseri 202-4]
          Length = 449

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 153/259 (59%), Gaps = 5/259 (1%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           I SD+G   A+++ + L     L    + D   Q ++  + ++  K           D  
Sbjct: 183 IESDVGFETAEELTDSLRDEAKLQNAKSHDDLKQVIVEKLVDIYDKGGEGEDSKLADDPD 242

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P+V L VGVNG GKTT IGKL+K++ D+G  VM+ A DTFR+ A++QL  W  R   +
Sbjct: 243 SKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVE 302

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     +D A++ Y+  K+A+ + +D L++DTAGRL N   LM+ + K+ R +K++ P 
Sbjct: 303 VVTGPEKADPASVVYDGVKKAKDRGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPD 362

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P+ VL VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  
Sbjct: 363 QPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKL 422

Query: 289 LGVGEGINDLEPFVAKDFS 307
           +G+GE ++DL  F A+ F+
Sbjct: 423 VGLGEKVDDLANFDAEKFA 441


>gi|37519820|ref|NP_923197.1| cell division protein FtsY-like protein [Gloeobacter violaceus PCC
           7421]
 gi|35210811|dbj|BAC88192.1| glr0251 [Gloeobacter violaceus PCC 7421]
          Length = 774

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/309 (37%), Positives = 189/309 (61%), Gaps = 9/309 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + V  E +SW++KL  G   T   L   +  +     +     EELE LL+++D+G+ V+
Sbjct: 458 EDVTVEEISWLQKLRAGLGRTRRSLVNNVKALAGRGPIGPDELEELEGLLLQADVGITVS 517

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVN 120
           ++I+  L  +   + +   +V+  +   + K L  L       F+ +    +V L+VGVN
Sbjct: 518 ERILAALQERVRREALPGDQVMPFLKSQLRKQLE-LEGDDPTGFAPKRGQLNVWLIVGVN 576

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           GVGKTT IGK++   + +G + ++AAGDTFR+AA++QL IW +R+    V +    +D A
Sbjct: 577 GVGKTTTIGKIAALATRSGYRTLIAAGDTFRAAAVEQLSIWGERSGVTVVANPSPKADPA 636

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR--LDPHAPHSVLQVL 237
           A+ ++A   A+A+ V++L++DTAGRL N   LM  + K+ R++ +  +D H   S+L VL
Sbjct: 637 AVVFDAISAAKARDVELLLVDTAGRLQNKKNLMDELAKVRRIIDKQAIDAHI-ESLL-VL 694

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L+Q ++F   AG TG+++TK+DG+A+ G  + IV   ++P+ F+GVGE I+D
Sbjct: 695 DATTGQNGLQQAKVFGETAGLTGVVITKLDGSAKAGIALAIVEQLQLPIRFVGVGEKIDD 754

Query: 298 LEPFVAKDF 306
           L PF + +F
Sbjct: 755 LRPFNSYEF 763


>gi|221091104|ref|XP_002166798.1| PREDICTED: similar to F21D5.7 [Hydra magnipapillata]
          Length = 199

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 130/192 (67%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +VVGVNGVGKTT IGKL+ + +  G KV+L A DTFR+AA+DQLK+W +R     V   +
Sbjct: 1   MVVGVNGVGKTTTIGKLAHQFNKRGKKVVLGAADTFRAAAVDQLKLWGERVGVTVVDHGM 60

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            +D +++A++A K+      D++IIDTAGRLH    LM  +GK+ RV+++  P APH V+
Sbjct: 61  NTDPSSVAFDAVKKGMELSADIIIIDTAGRLHTKVNLMNELGKIKRVVQKFLPEAPHEVM 120

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLD +TGQNA+ Q   F  V   + L +TK+DGTA+GG +I I    KIPV ++GVGE 
Sbjct: 121 LVLDGSTGQNAVIQAREFTKVTEISSLAITKLDGTAKGGVVIGISDEFKIPVKYIGVGEK 180

Query: 295 INDLEPFVAKDF 306
           ++DL+ F   +F
Sbjct: 181 MDDLQVFNKMEF 192


>gi|332295826|ref|YP_004437749.1| signal recognition particle-docking protein FtsY [Thermodesulfobium
           narugense DSM 14796]
 gi|332178929|gb|AEE14618.1| signal recognition particle-docking protein FtsY [Thermodesulfobium
           narugense DSM 14796]
          Length = 291

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 112/284 (39%), Positives = 167/284 (58%), Gaps = 18/284 (6%)

Query: 27  KLKEGITDIISSRRLDDGV--------REELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           K+KE +T    +RR+   V         E LE  L+  D+G  +AQ+IV++   KR+   
Sbjct: 6   KVKEALT---KTRRVFSSVVGMESIDWDEILEKFLL-VDVGADIAQEIVKDA-KKRWLNA 60

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSD 137
             ++  L +  E      +P  KP  +  +  P V L++GVNG GKTT   KL+K  + +
Sbjct: 61  APIEIALKEAIE----DFLPEGKPQLFFTNSHPCVWLLIGVNGSGKTTTCAKLAKYSIEE 116

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                +L A DTFR+AAIDQLKIW +R + D +  +  SD AA+ ++  K ++++K + +
Sbjct: 117 FKATPILIAADTFRAAAIDQLKIWGERLNIDVISQKENSDPAAVVFDGLKASKSRKRNPI 176

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           IIDTAGRLH    LM  + K+ RV+ +     P  VL VLDA+TG NA++Q E+F     
Sbjct: 177 IIDTAGRLHTKDNLMEELKKIERVIGKEIEGEPSEVLLVLDASTGYNAVKQAEVFSQSLK 236

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            TG+I+TK+D +A+GG ++ I     IPV F+GVGEG++DL PF
Sbjct: 237 VTGIILTKLDSSAKGGYVLNITKKFNIPVKFIGVGEGVDDLVPF 280


>gi|15834827|ref|NP_296586.1| signal recognition particle protein FtsY [Chlamydia muridarum Nigg]
 gi|270284993|ref|ZP_06194387.1| signal recognition particle protein FtsY [Chlamydia muridarum Nigg]
 gi|270289016|ref|ZP_06195318.1| signal recognition particle protein FtsY [Chlamydia muridarum
           Weiss]
 gi|301336390|ref|ZP_07224592.1| signal recognition particle protein FtsY [Chlamydia muridarum
           MopnTet14]
 gi|7190244|gb|AAF39079.1| signal recognition particle protein FtsY [Chlamydia muridarum Nigg]
          Length = 284

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 98/269 (36%), Positives = 146/269 (54%), Gaps = 7/269 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97
           + L   + E  E LL   D G  + +    EL   ++  +  ++ ++   +S++I K+  
Sbjct: 15  KTLPSDLLEYAEALLYEGDFGPKLTEAFCNELRRHKHPDERLIKELIRSFLSDIIAKL-- 72

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
               P     S  PHV L++G NG GKTT + KL+         V++ A DTFRSA ++Q
Sbjct: 73  ----PQKKSSSAHPHVTLILGTNGSGKTTTVAKLAHYCLSQNQTVLIVATDTFRSAGMEQ 128

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           ++ WAD     F+  + G DAAA+A++    A A+  D +IIDT+GRLH ++ L+  + K
Sbjct: 129 MRCWADSLGCGFISGKPGGDAAAIAFDGISAAVARNYDQVIIDTSGRLHTHTNLLKELQK 188

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +  V  +  P APH  L  +DAT G N L QV++FH      GLI TK++G+A+GG L  
Sbjct: 189 IATVCNKAFPGAPHETLMTVDATLGSNTLSQVKLFHEAVPIDGLIFTKIEGSAKGGSLFR 248

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           I    KIP  F+G GE + D EPF    F
Sbjct: 249 IADELKIPTRFVGYGETVYDFEPFSIDRF 277


>gi|256827011|ref|YP_003150970.1| signal recognition particle-docking protein FtsY [Cryptobacterium
           curtum DSM 15641]
 gi|256583154|gb|ACU94288.1| signal recognition particle-docking protein FtsY [Cryptobacterium
           curtum DSM 15641]
          Length = 384

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 106/279 (37%), Positives = 165/279 (59%), Gaps = 15/279 (5%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D+   E LE+ LI +D+G   A  IVE L  +      + +  L D   ++  +   ++
Sbjct: 30  VDEEFWEGLEEALILADVGAPAALDIVEALRVE------ATRHALPDAYAVMDALADQIA 83

Query: 101 KPFNWD----FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             F  +    F   P ++L VG+NG GKTT +GK++      G  V+L + DTFR+AAI+
Sbjct: 84  SSFTTEGQGLFEENPVLVLFVGINGAGKTTTVGKIAAHSKAHGRSVLLGSADTFRAAAIE 143

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL+ WA R+  + V  E GSD A++ Y+  ++A+A   D+++IDTAGRLH +  LM  + 
Sbjct: 144 QLEEWARRSQVEIVERERGSDPASVCYDTIERAEALGSDLVLIDTAGRLHTSDDLMRELQ 203

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K++ V++R       +VL V+DATTGQN L Q   F       GLI+TK+DGTA+GG  I
Sbjct: 204 KVVSVVRRRAAMPVRTVL-VIDATTGQNGLSQARAFDKALDLDGLIVTKLDGTAKGG--I 260

Query: 277 PIVVTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            + ++H+  +P+  +GVGE ++DL+ F A DF+A + G 
Sbjct: 261 ALAISHELSLPIVKVGVGEQLDDLQEFDAHDFAAALIGA 299


>gi|224438196|ref|ZP_03659131.1| signal recognition particle-docking GTPase FtsY [Helicobacter
           cinaedi CCUG 18818]
 gi|313144641|ref|ZP_07806834.1| signal recognition particle-docking GTPase FtsY [Helicobacter
           cinaedi CCUG 18818]
 gi|313129672|gb|EFR47289.1| signal recognition particle-docking GTPase FtsY [Helicobacter
           cinaedi CCUG 18818]
          Length = 290

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 110/297 (37%), Positives = 168/297 (56%), Gaps = 21/297 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             + T  K  + I  ++ S++ D   ++ELE++LI  DI   + + I++ L         
Sbjct: 4   SLSKTLQKTTQNIASLLGSKK-DKLSKDELEEILIECDIAYELVESILDSLPP------- 55

Query: 80  SVQRVLYDVSELIHKMLMPL----SKPF--NWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
                 Y   + +HK L+ L    S P   N D S +P V L+VGVNG GKTT I KL+ 
Sbjct: 56  ------YVSKDALHKALIALLEIESSPLLENAD-SIKPLVTLIVGVNGAGKTTSIAKLAN 108

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G KVMLAAGDTFR+AAI+Q+K+W +R S   + ++   D +A+A+++   A A+ 
Sbjct: 109 LAQKEGKKVMLAAGDTFRAAAIEQIKLWGERLSIPVIATQHMHDPSAVAFDSINSALARN 168

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +D L IDTAGRLHN + L   + K++RV ++     P     VLD T G +A+ Q + F 
Sbjct: 169 IDELYIDTAGRLHNQTNLNNELLKIVRVCQKALRDLPLRKFLVLDGTQGSSAINQAKAFS 228

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
                 G+I+TK+DGT++GG +  IV   KIP+ F+GVGE  +DL  F  +++  ++
Sbjct: 229 QNITFDGIIITKLDGTSKGGAIFSIVSELKIPICFIGVGEKADDLLKFDKQEYVKIL 285


>gi|57168091|ref|ZP_00367230.1| signal recognition particle-docking protein FtsY [Campylobacter
           coli RM2228]
 gi|305431759|ref|ZP_07400926.1| cell division protein FtsY [Campylobacter coli JV20]
 gi|57020465|gb|EAL57134.1| signal recognition particle-docking protein FtsY [Campylobacter
           coli RM2228]
 gi|304444843|gb|EFM37489.1| cell division protein FtsY [Campylobacter coli JV20]
          Length = 288

 Score =  182 bits (461), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 97/268 (36%), Positives = 156/268 (58%), Gaps = 11/268 (4%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           LE++L+ +D+   + ++I+  L      K   ++RV+           +  +K F     
Sbjct: 31  LEEILLEADVAYEIVEEIIYYLPPSDEVKKEDLKRVM-------GSYFLYENKEF---LD 80

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P V L++GVNG GKTT I KL+      G KV+L A DTFR+ AI+QL++W+++   D
Sbjct: 81  EKPFVELILGVNGAGKTTSIAKLANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVD 140

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V ++ G D +A+A++   +A+AK  D +IIDTAGRL N   L   + K++R+  +  PH
Sbjct: 141 IVLTQQGHDPSAVAFDTISKARAKGFDKVIIDTAGRLQNQKNLANELEKIVRISAKAMPH 200

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH  + VLD T G   + Q + F+ +    G+I+TK+DGTA+GG L  I    ++P+ +
Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVQLDGVIITKLDGTAKGGALFSIARELELPILY 260

Query: 289 LGVGEGINDLEPFVAKDF-SAVITGCLD 315
           +GVGE + DL  F A++F   ++ G  D
Sbjct: 261 IGVGEKMQDLIEFNAQNFLDTLLEGVFD 288


>gi|315453635|ref|YP_004073905.1| putative signal recognition particle receptor protein [Helicobacter
           felis ATCC 49179]
 gi|315132687|emb|CBY83315.1| putative signal recognition particle receptor protein [Helicobacter
           felis ATCC 49179]
          Length = 295

 Score =  182 bits (461), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 105/283 (37%), Positives = 165/283 (58%), Gaps = 12/283 (4%)

Query: 28  LKEGITDIISSRRLDDGV--REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQR 83
            K+ I ++ S  +  D    +EE+E++LI  D+   + +K++E L    KR   +V++ R
Sbjct: 6   FKKTIQNVASLLKTKDATFSKEEMEEILIGFDVQFDLVEKLLEHLPEQIKRNHLEVALMR 65

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
            L   S        P+          +P V L++GVNG GKTT I KL+KK      KV+
Sbjct: 66  FLRKESYYDQVRFKPVDT--------KPLVSLILGVNGAGKTTTIAKLAKKHLLNKQKVL 117

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L AGDTFR+AA+ QL++W ++   + + +   SD +ALAY   +   A+ VD +IIDTAG
Sbjct: 118 LGAGDTFRAAAVKQLQLWGEKLQLEVISAGQNSDPSALAYNTIEAGIARGVDQIIIDTAG 177

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RLHN + L   + K+ RV  +   +AP+  + +LD T G +AL Q ++FH      G+I+
Sbjct: 178 RLHNQTNLKNELLKISRVCSKALNNAPYYKILILDGTQGSSALEQAKIFHESLELDGVIV 237

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TK+DGT++GG ++ I+   ++P+ +LGVGE  NDL PF   ++
Sbjct: 238 TKLDGTSKGGCILSILYELQLPILYLGVGEKENDLIPFEEMEY 280


>gi|116629439|ref|YP_814611.1| Signal recognition particle GTPase [Lactobacillus gasseri ATCC
           33323]
 gi|311110913|ref|ZP_07712310.1| signal recognition particle-docking protein FtsY [Lactobacillus
           gasseri MV-22]
 gi|116095021|gb|ABJ60173.1| signal recognition particle-docking protein FtsY [Lactobacillus
           gasseri ATCC 33323]
 gi|311066067|gb|EFQ46407.1| signal recognition particle-docking protein FtsY [Lactobacillus
           gasseri MV-22]
          Length = 449

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 153/259 (59%), Gaps = 5/259 (1%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           I SD+G   A+++ + L     L    + D   Q ++  + ++  K           D  
Sbjct: 183 IESDVGFETAEELTDSLRDEAKLQNAKSHDDLKQVIVEKLVDIYDKGGEGEDSKLADDPD 242

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P+V L VGVNG GKTT IGKL+K++ D+G  VM+ A DTFR+ A++QL  W  R   +
Sbjct: 243 AKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVE 302

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     +D A++ Y+  K+A+ + +D L++DTAGRL N   LM+ + K+ R +K++ P 
Sbjct: 303 VVTGPEKADPASVVYDGVKKAKDRGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPD 362

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P+ VL VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  
Sbjct: 363 QPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKL 422

Query: 289 LGVGEGINDLEPFVAKDFS 307
           +G+GE ++DL  F A+ F+
Sbjct: 423 VGLGEKVDDLANFDAEKFA 441


>gi|71894168|ref|YP_278276.1| cell division protein FtsY [Mycoplasma synoviae 53]
 gi|71850956|gb|AAZ43565.1| cell division protein FtsY [Mycoplasma synoviae 53]
          Length = 350

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 104/284 (36%), Positives = 170/284 (59%), Gaps = 14/284 (4%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV--LYDVSELIHKMLM 97
            LD+   E LE++LI SDI V++   I+E++      K++ + ++  +  + E+I   + 
Sbjct: 67  ELDEEYFENLEEILIMSDINVSLVDVIIEQI-----KKEIRINKITDIKLIGEIIADKIF 121

Query: 98  PLSK-----PFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            +         + D+ +++ +V  +VGVNG GKTT I KL+        K+++AA DTFR
Sbjct: 122 EIYTNNSIIDTSLDYKNNQTNVFFIVGVNGSGKTTSIAKLANYYKSLDKKILIAAADTFR 181

Query: 152 SAAIDQLKIWADRTSADFVC-SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           + A++QL+IW+++   D V   +  +D +++ YEA K+A+ +  D+LIIDTAGRL N   
Sbjct: 182 AGAVEQLRIWSEKIGCDIVMPKKANADPSSVIYEAAKKAKDEAYDLLIIDTAGRLQNKVN 241

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + KM  VLKR  P AP+  L VLDAT GQ+ + Q ++F  V   +G+I+TKMDGT+
Sbjct: 242 LMNELKKMYEVLKRFLPEAPNESLLVLDATNGQSGIMQAKVFKEVVNLSGIILTKMDGTS 301

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           +GG ++ I     + V  +G+GE ++DL+ F  + F   +T  L
Sbjct: 302 KGGIVLSIKDELDLNVKLVGLGEKLDDLQEFDLELFIYQMTKSL 345


>gi|117928774|ref|YP_873325.1| signal recognition particle-docking protein FtsY [Acidothermus
           cellulolyticus 11B]
 gi|117649237|gb|ABK53339.1| signal recognition particle-docking protein FtsY [Acidothermus
           cellulolyticus 11B]
          Length = 413

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/304 (40%), Positives = 180/304 (59%), Gaps = 11/304 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    A +   L  G+  ++S  RLDD   +E+EDLL+ +D+GVA   ++VE L T+  
Sbjct: 108 RLRSRLARSESVLGRGLFALLSRERLDDATWQEIEDLLLTADVGVAATTELVERLRTE-- 165

Query: 76  AKDVSVQRVLYDVSELIHKMLMP-----LSKPF-NWDFSHRPHVILVVGVNGVGKTTVIG 129
           AK + V R   DV  ++ + L+      L +       +  P V+LVVGVNG GKTT +G
Sbjct: 166 AKVMGV-RSPDDVRAMLRRSLLDTVDAGLDRSLATTRTAAGPAVVLVVGVNGTGKTTTVG 224

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++ +   G  V+L A DTFR+AA DQL+ W  R     V     +D A++A++A + A
Sbjct: 225 KLARLLVADGRSVVLGAADTFRAAAADQLETWGRRVGVPVVRGAERADPASVAFDAVRVA 284

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             ++ DV++IDTAGRLH  + LM  +GK+ RV++R  P +   VL VLDATTGQN L Q 
Sbjct: 285 IEQEADVVVIDTAGRLHTKTGLMDELGKVKRVVERRCPVS--EVLLVLDATTGQNGLTQA 342

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  V   TG+++TK+DGTA+GG +I +     IPV  +G+GEG +DL PF    F   
Sbjct: 343 RVFTDVVAVTGVVLTKLDGTAKGGIVISVQRELGIPVKLVGLGEGPDDLAPFDPAAFVDA 402

Query: 310 ITGC 313
           + G 
Sbjct: 403 LLGV 406


>gi|153931250|ref|YP_001384626.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A str. ATCC 19397]
 gi|153937568|ref|YP_001388143.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A str. Hall]
 gi|152927294|gb|ABS32794.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A str. ATCC 19397]
 gi|152933482|gb|ABS38981.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A str. Hall]
          Length = 303

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/300 (42%), Positives = 186/300 (62%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +  KL +G   T    K+G TD ISS       +D+ + EELE++L+ +DIGV  + KI+
Sbjct: 5   FFDKLKEGLTKT----KDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKII 60

Query: 68  EELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           + L  + +  K      +   +  +I ++L         D +  P V+L++GVNGVGKTT
Sbjct: 61  DRLRERVKEEKIKDPAEIKPCLKRVILQILGEEKGSITPDTT--PKVMLIIGVNGVGKTT 118

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGK+S K+ + G KV++AA DTFR+AAIDQL++W+ R   D +  + GSD  A+ ++A 
Sbjct: 119 SIGKVSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPGAVVFDAV 178

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+++K DVLI DTAGRLHN   LM  + K+ ++L+R    A    L VLDATTGQNA+
Sbjct: 179 QAAKSRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDATTGQNAV 238

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F +     G+I+TK+DGTA+GG +I I     IPV  +GVGEGI DL+ F +++F
Sbjct: 239 IQAKEFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQEFNSEEF 298


>gi|296273625|ref|YP_003656256.1| signal recognition particle-docking protein FtsY [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097799|gb|ADG93749.1| signal recognition particle-docking protein FtsY [Arcobacter
           nitrofigilis DSM 7299]
          Length = 310

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/265 (36%), Positives = 154/265 (58%), Gaps = 20/265 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHK--MLMPLSK 101
           E++E+LLI +D+  ++ +K ++   E++ ++               +L H+  ML   + 
Sbjct: 49  EDIEELLIEADMDYSIIEKAMDGLPEMINRK---------------QLRHRLVMLFEHAP 93

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
             N +    P V L++GVNG GKTT I KL+         V+L AGDTFR+AAI+QL IW
Sbjct: 94  DVNMENLPSPFVQLIIGVNGAGKTTTIAKLANLYKKDNKSVILGAGDTFRAAAIEQLSIW 153

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           AD+     + ++ G D +A+AY+    A A+ +D +IIDTAGRL   + L   + K+++V
Sbjct: 154 ADKLEVPIIKTKQGHDPSAVAYDTISSAVARNIDNVIIDTAGRLQTQTNLSNELKKIVKV 213

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
             +    APH  L +LD T G  A+ Q + F+ + G  G+I+TK+DGTA+GG L  I   
Sbjct: 214 CSKAKEGAPHQKLMILDGTQGNTAIEQAKAFNEMVGVDGIIVTKLDGTAKGGALFSISNR 273

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDF 306
            ++P++++GVGE +NDL  F   +F
Sbjct: 274 LELPIFYIGVGETMNDLVEFSPDNF 298


>gi|148380409|ref|YP_001254950.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A str. ATCC 3502]
 gi|168180668|ref|ZP_02615332.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum NCTC 2916]
 gi|226949804|ref|YP_002804895.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A2 str. Kyoto]
 gi|148289893|emb|CAL84001.1| putative signal recognition particle [Clostridium botulinum A str.
           ATCC 3502]
 gi|182668550|gb|EDT80529.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum NCTC 2916]
 gi|226843332|gb|ACO85998.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A2 str. Kyoto]
 gi|322806716|emb|CBZ04285.1| signal recognition particle receptor protein FtsY (=alpha subunit)
           (TC 3.A.5.1.1) [Clostridium botulinum H04402 065]
          Length = 303

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/307 (41%), Positives = 188/307 (61%), Gaps = 26/307 (8%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +  KL +G   T    K+G TD ISS       +D+ + EELE++L+ +DIGV  + KI+
Sbjct: 5   FFDKLKEGLTKT----KDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKII 60

Query: 68  EEL---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + L   + +   KD +     ++RV+ ++       + P            P V+L++GV
Sbjct: 61  DRLRERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITP---------DTTPKVMLIIGV 111

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGK+S K+ + G KV++AA DTFR+AAIDQL++W+ R   D +  + GSD  
Sbjct: 112 NGVGKTTSIGKVSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPG 171

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A + A+++K DVLI DTAGRLHN   LM  + K+ ++L+R    A    L VLDA
Sbjct: 172 AVVFDAVQAAKSRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDA 231

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F +     G+I+TK+DGTA+GG +I I     IPV  +GVGEGI DL+
Sbjct: 232 TTGQNAVIQAKEFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQ 291

Query: 300 PFVAKDF 306
            F +++F
Sbjct: 292 EFNSEEF 298


>gi|300361931|ref|ZP_07058108.1| cell division protein FtsY [Lactobacillus gasseri JV-V03]
 gi|300354550|gb|EFJ70421.1| cell division protein FtsY [Lactobacillus gasseri JV-V03]
          Length = 446

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 153/259 (59%), Gaps = 5/259 (1%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           I SD+G   A+++ + L     L    + D   Q ++  + ++  K           D  
Sbjct: 180 IESDVGFETAEELTDSLRDEAKLQNAKSHDDLKQVIVEKLVDIYDKGGEGKDSKLADDPE 239

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P+V L VGVNG GKTT IGKL+K++ D+G  VM+ A DTFR+ A++QL  W  R   +
Sbjct: 240 AKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVE 299

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     +D A++ Y+  K+A+ + +D L++DTAGRL N   LM+ + K+ R +K++ P 
Sbjct: 300 VVTGPEKADPASVVYDGVKKAKDRGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPD 359

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P+ VL VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  
Sbjct: 360 QPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKL 419

Query: 289 LGVGEGINDLEPFVAKDFS 307
           +G+GE ++DL  F A+ F+
Sbjct: 420 VGLGEKVDDLANFDAEKFA 438


>gi|269836378|ref|YP_003318606.1| signal recognition particle-docking protein FtsY [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785641|gb|ACZ37784.1| signal recognition particle-docking protein FtsY [Sphaerobacter
           thermophilus DSM 20745]
          Length = 321

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 167/311 (53%), Gaps = 13/311 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73
           K+  G   T   + + I ++     + + + E+LE LLI++D+GV    ++++ L  +  
Sbjct: 16  KIEAGLKKTRRGIFKDIANLFERSEITEDLFEDLEALLIQADLGVETTLELLDNLRDRID 75

Query: 74  --RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKTTVIG 129
             R  +    +  L   +E+I  +L   ++        R  P VILVVGVNG GKTT I 
Sbjct: 76  RERIKQPADAREALR--TEMI-ALLENATRNRKIKIYQRGVPFVILVVGVNGTGKTTTIA 132

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K   D G  VML AGDTFR+AAIDQLK+W +R     +  + G+D  A+ ++  + A
Sbjct: 133 KLAKYHQDQGRNVMLVAGDTFRAAAIDQLKVWGERLKVPVIAHDPGADPGAVVFDGMQAA 192

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  D+L++DTAGRLH    LM  + K+ +V++R    AP  VL V+DATTGQN L Q 
Sbjct: 193 YNRNADILLVDTAGRLHTKYNLMEELKKIRKVMQRHVAEAPQEVLLVIDATTGQNGLVQA 252

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      T + + K+DGTARGG    I      P+ ++G GE +  L  F    +   
Sbjct: 253 KKFAEAVEITDIAIAKLDGTARGGIAFAIARELGTPISYVGTGEQVTALAEFNPVTY--- 309

Query: 310 ITGCLDYGEEK 320
               L +GEE+
Sbjct: 310 -VDALFFGEEE 319


>gi|168184657|ref|ZP_02619321.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum Bf]
 gi|170760312|ref|YP_001787763.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A3 str. Loch Maree]
 gi|237795887|ref|YP_002863439.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum Ba4 str. 657]
 gi|169407301|gb|ACA55712.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A3 str. Loch Maree]
 gi|182672312|gb|EDT84273.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum Bf]
 gi|229261814|gb|ACQ52847.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum Ba4 str. 657]
          Length = 303

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/300 (42%), Positives = 185/300 (61%), Gaps = 12/300 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +  KL +G   T    K+G TD ISS       +D+ + EELE++L+ +DIGV  + KI+
Sbjct: 5   FFDKLKEGLTKT----KDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKII 60

Query: 68  EELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           + L  + +  K      +   +  +I ++L         D +  P V+L++GVNGVGKTT
Sbjct: 61  DRLRERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITPDIT--PKVMLIIGVNGVGKTT 118

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGK+S K+ + G KV++AA DTFR+AAIDQL++W+ R   D +  + GSD  A+ ++A 
Sbjct: 119 SIGKVSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPGAVVFDAV 178

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+++K DVLI DTAGRLHN   LM  + K+ ++L+R    A    L VLDATTGQNA+
Sbjct: 179 QAAKSRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDATTGQNAV 238

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F +     G+I+TK+DGTA+GG +I I     IPV  +GVGEGI DL+ F  ++F
Sbjct: 239 IQAKEFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQEFNPEEF 298


>gi|218296515|ref|ZP_03497243.1| signal recognition particle-docking protein FtsY [Thermus aquaticus
           Y51MC23]
 gi|218243057|gb|EED09589.1| signal recognition particle-docking protein FtsY [Thermus aquaticus
           Y51MC23]
          Length = 304

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 119/185 (64%)

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT I KL +   + G KVM  AGDTFR+A   QL  W  R S   +    G+D AAL
Sbjct: 113 VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAAL 172

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A +  +A+  D+L +DTAGRLH    LM  + K+ R + + DP  P  V  VLDA T
Sbjct: 173 AYDAVQAMKARDYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT 232

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q + FH   G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL+PF
Sbjct: 233 GQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIRFIGVGEGPDDLQPF 292

Query: 302 VAKDF 306
             + F
Sbjct: 293 DPEAF 297


>gi|194246475|ref|YP_002004114.1| Signal recognition particle-docking protein [Candidatus Phytoplasma
           mali]
 gi|193806832|emb|CAP18261.1| Signal recognition particle-docking protein [Candidatus Phytoplasma
           mali]
          Length = 324

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 161/283 (56%), Gaps = 19/283 (6%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKM 95
           + +++D + + LE L I++DI       ++ E+      K +  + ++Y  ++S +I + 
Sbjct: 38  NSKINDNLLKSLEILFIQTDISTETVIYLMTEI-----KKQIKEKNIIYSKNLSSIIFET 92

Query: 96  LMPLSKPFNW------------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           ++ L +  ++            +F  +P V L VGVNGVGKTT IGK++++  +   KV+
Sbjct: 93  MLKLYQKDDFLIYQNKVNFLSNEFFPKPEVYLFVGVNGVGKTTTIGKIAQQFKNKQKKVL 152

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L AGDTFRS AI+QLKIW  RT +     E     + + +E  + A+ +  DV++ DTAG
Sbjct: 153 LIAGDTFRSGAIEQLKIWGQRTQSTVFFKEQAKSPSNVIFEGLQLAKKENYDVVLCDTAG 212

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RL N   LM+ + K+ RV+ ++  + P     VLDA  GQN + QV +F       G+I+
Sbjct: 213 RLQNKLNLMSELSKIRRVILKVLNYEPQETFLVLDAMMGQNGIDQVSIFQKNVFINGVIL 272

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TK+DG+++GG +  I   + I + ++GVGE + DL PF  K++
Sbjct: 273 TKLDGSSKGGLIFTIKHLYNIDIKYIGVGENVEDLIPFEIKNY 315


>gi|268679516|ref|YP_003303947.1| signal recognition particle-docking protein FtsY [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617547|gb|ACZ11912.1| signal recognition particle-docking protein FtsY [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 294

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/260 (39%), Positives = 148/260 (56%), Gaps = 13/260 (5%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPFNWD 106
           LE++LI SDI   + ++I+  L   +      V+RVL  Y + E   K           D
Sbjct: 32  LEEILIESDIPYELVEEIIYYLPPSQTVARADVKRVLQSYFMYENTQK-----------D 80

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              +P V LV+GVNG GKTT I KL+          +L A DTFR+AAI+QLK WA++  
Sbjct: 81  TPTKPFVELVIGVNGAGKTTTIAKLAHIYKKENQSTLLGAADTFRAAAIEQLKSWAEKID 140

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              V +  G D +A+AY+    A AKK+D +IIDTAGRLHN   L   + K++R+  +  
Sbjct: 141 VGIVYTAQGHDPSAVAYDTISSALAKKIDHVIIDTAGRLHNQVNLSNELKKIVRICDKAL 200

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             APH  + +LD T G +A+ Q + FH +    G+I+TK+DGTA+GG L  I    ++P+
Sbjct: 201 LGAPHRKILILDGTQGSSAINQAKAFHEMISIDGIIITKLDGTAKGGSLFGIAKALQLPI 260

Query: 287 YFLGVGEGINDLEPFVAKDF 306
            ++GVGEG +DL  F   D+
Sbjct: 261 LYVGVGEGRDDLIAFNPTDY 280


>gi|150016057|ref|YP_001308311.1| signal recognition particle-docking protein FtsY [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902522|gb|ABR33355.1| signal recognition particle-docking protein FtsY [Clostridium
           beijerinckii NCIMB 8052]
          Length = 302

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/256 (44%), Positives = 159/256 (62%), Gaps = 4/256 (1%)

Query: 56  SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           SDIG+     I+E L  K R  K    Q V   + E+I  +L+  +     D      V+
Sbjct: 49  SDIGMDTTVDIIERLRGKIRKEKINDPQEVKPALKEVIRDILLEGTYE---DDEKEKKVM 105

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L++GVNGVGKTT IGKL+ K    G KV+LAA DTFR+AAIDQL++W+ R   D V  + 
Sbjct: 106 LIIGVNGVGKTTSIGKLAAKNKQEGKKVLLAAADTFRAAAIDQLEVWSSRAEVDIVKHQE 165

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD AA+ ++A + ++A+ VD+LI DTAGRLHN   LM  + K+ R++ R         L
Sbjct: 166 GSDPAAVVFDAIEASKARNVDLLICDTAGRLHNKKNLMNELEKINRIIDRELQGYRKETL 225

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNA+ Q + F       G+I+TK+DGTA+GG ++ I  +  IPV ++GVGEG
Sbjct: 226 LVLDATTGQNAVIQAKQFMEACPIDGIILTKLDGTAKGGVVLSIKQSLNIPVRYIGVGEG 285

Query: 295 INDLEPFVAKDFSAVI 310
           I+DL+ F A+ F+  +
Sbjct: 286 IDDLQTFDAEGFAEAL 301


>gi|153941237|ref|YP_001391749.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum F str. Langeland]
 gi|152937133|gb|ABS42631.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum F str. Langeland]
 gi|295319774|gb|ADG00152.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum F str. 230613]
          Length = 303

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/307 (41%), Positives = 187/307 (60%), Gaps = 26/307 (8%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +  KL +G   T    K+G TD ISS       +D+ + EELE++L+ +DIGV  + KI+
Sbjct: 5   FFDKLKEGLTKT----KDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKII 60

Query: 68  EEL---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + L   + +   KD +     ++RV+ ++       + P            P V+L++GV
Sbjct: 61  DRLRERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITP---------DTTPKVMLIIGV 111

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGK+S K+ + G KV++AA DTFR+AAIDQL++W+ R   D +  + GSD  
Sbjct: 112 NGVGKTTSIGKVSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPG 171

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A + A+++K DVLI DTAGRLHN   LM  + K+ ++L+R    A    L VLDA
Sbjct: 172 AVVFDAVQAAKSRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDA 231

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F +     G+I+TK+DGTA+GG +I I     IPV  +GVGEGI DL+
Sbjct: 232 TTGQNAVIQAKEFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQ 291

Query: 300 PFVAKDF 306
            F  ++F
Sbjct: 292 EFNPEEF 298


>gi|157737135|ref|YP_001489818.1| signal recognition particle-docking GTPase FtsY [Arcobacter
           butzleri RM4018]
 gi|315636844|ref|ZP_07892069.1| cell division protein FtsY [Arcobacter butzleri JV22]
 gi|157698989|gb|ABV67149.1| signal recognition particle-docking GTPase FtsY [Arcobacter
           butzleri RM4018]
 gi|315478898|gb|EFU69606.1| cell division protein FtsY [Arcobacter butzleri JV22]
          Length = 309

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/264 (35%), Positives = 157/264 (59%), Gaps = 19/264 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           +E+E+LLI +D+   + +K +    +++T++               +L H+++M      
Sbjct: 49  DEVEELLIEADMEYEIIEKAMNGLPDMITRK---------------QLRHRLVMLFEHAP 93

Query: 104 NWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
             + ++ +P V L++GVNG GKTT I KL+ K+   G  V+L AGDTFR+AAI+QL  WA
Sbjct: 94  EVNLANTKPFVRLIIGVNGAGKTTTIAKLANKLKKEGKSVILGAGDTFRAAAIEQLSTWA 153

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           ++     + ++ G DA+A+A++    A A+ +D +IIDTAGRL   + L   + K+++V 
Sbjct: 154 NKLEIPIIKTQQGHDASAVAFDTISAAIARNIDDVIIDTAGRLQTQTNLNNELKKIVKVC 213

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            +    APH  L +LD T G +A+ Q   FH + G  G+I+TK+DGTA+GG L  I    
Sbjct: 214 SKAMSDAPHQKLLILDGTQGNSAIAQARAFHEIVGIDGIIVTKLDGTAKGGALFSISNQL 273

Query: 283 KIPVYFLGVGEGINDLEPFVAKDF 306
           ++P++++G+GE  +DL  F   +F
Sbjct: 274 ELPIFYVGIGEKQDDLVEFSPDNF 297


>gi|170757082|ref|YP_001781994.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum B1 str. Okra]
 gi|169122294|gb|ACA46130.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum B1 str. Okra]
          Length = 303

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/307 (41%), Positives = 187/307 (60%), Gaps = 26/307 (8%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +  KL +G   T    K+G TD ISS       +D+ + EELE++L+ +DIGV  + KI+
Sbjct: 5   FFDKLKEGLTKT----KDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKII 60

Query: 68  EEL---LTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + L   + +   KD +     ++RV+ ++       + P            P V+L++GV
Sbjct: 61  DRLRERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITP---------DTTPKVMLIIGV 111

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGK+S K+ + G KV++AA DTFR+AAIDQL++W+ R   D +  + GSD  
Sbjct: 112 NGVGKTTSIGKVSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPG 171

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A + A+++K DVLI DTAGRLHN   LM  + K+ ++L+R    A    L VLDA
Sbjct: 172 AVVFDAVQAAKSRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDA 231

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F +     G+I+TK+DGTA+GG +I I     IPV  +GVGEGI DL+
Sbjct: 232 TTGQNAVIQAKEFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQ 291

Query: 300 PFVAKDF 306
            F  ++F
Sbjct: 292 DFNPEEF 298


>gi|298345306|ref|YP_003717993.1| FtsY signal recognition particle [Mobiluncus curtisii ATCC 43063]
 gi|298235367|gb|ADI66499.1| FtsY signal recognition particle [Mobiluncus curtisii ATCC 43063]
          Length = 596

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/290 (38%), Positives = 174/290 (60%), Gaps = 13/290 (4%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA---KDVS--- 80
           K    I +++S+  L++   E +ED L+ +D+GV    +++ +L  K+     KD +   
Sbjct: 305 KFGRAILNVLSNADLEESDWEAIEDELLAADLGVEPTVELIGKLKVKQKVAGEKDATQVR 364

Query: 81  --VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
              +R+L D+ +   +  + L  P   D   +   IL+VGVNG GKTT +GKL++ +   
Sbjct: 365 RMAKRMLTDMLDRKAERRLNLEVP--EDSPTQTAGILLVGVNGGGKTTTVGKLARLLVAE 422

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVL 197
              V+L A DTFR+AA +QL+ W DR     V +E   +D A++A++A K A+    DV+
Sbjct: 423 RKTVVLGAADTFRAAAGEQLQTWGDRVGVPVVRAEKDQADPASVAFDAAKAAREAGSDVV 482

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDTAGRL N   LM  +GK+ RV ++  P     VL V+DATTGQNAL Q ++F    G
Sbjct: 483 VIDTAGRLQNKVGLMDELGKIKRVAEKQVPIT--EVLLVIDATTGQNALSQAKIFTEAVG 540

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            TG+++TK+DG+A+GG ++P+     IPV  +G+GEG +DL PFV  DF+
Sbjct: 541 VTGIVLTKLDGSAKGGVIVPLQRELGIPVKLVGLGEGPDDLAPFVPGDFA 590


>gi|159900675|ref|YP_001546922.1| signal recognition particle-docking protein FtsY [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893714|gb|ABX06794.1| signal recognition particle-docking protein FtsY [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 321

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/256 (46%), Positives = 156/256 (60%), Gaps = 6/256 (2%)

Query: 54  IRSDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           I  D+G   A KIVE   E   K+  K  S  R L   SEL++++   +  P   + S +
Sbjct: 61  IAGDVGAENALKIVERVREKCEKKGFKFASEARSLLK-SELVNRL--DVDTPQYSERSTK 117

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+VILVVGVNGVGKTT+I KL+ +    G  V+LAA DTFR+AAIDQL+ WADR     +
Sbjct: 118 PYVILVVGVNGVGKTTLIAKLANRYKAMGKNVILAAADTFRAAAIDQLQHWADRVGVPMI 177

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + GSD  A+AY+A +    ++ DVLIIDTAGRL +   LM  + K+  V+K+   +AP
Sbjct: 178 SQQPGSDPGAVAYDATQATYNQQADVLIIDTAGRLQSKHNLMKELEKISNVVKKRWQYAP 237

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H VL VLDATTGQN L Q   F   A  T L +TK+DGTA+GG    IV   + P+ ++G
Sbjct: 238 HEVLLVLDATTGQNGLIQARAFTQAAQVTHLALTKLDGTAKGGIAFAIVQEIERPIKYIG 297

Query: 291 VGEGINDLEPFVAKDF 306
            GE INDL  F  + F
Sbjct: 298 TGETINDLALFDGESF 313


>gi|42543563|pdb|1RJ9|A Chain A, Structure Of The Heterodimer Of The Conserved Gtpase
           Domains Signal Recognition Particle (Ffh) And Its
           Receptor (Ftsy)
          Length = 304

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 120/185 (64%)

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT I KL +   + G KVM  AGDTFR+A   QL  W  R S   +    G+D+AAL
Sbjct: 113 VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAAL 172

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A +  +A+  D+L +DTAGRLH    LM  + K+ R + + DP  P  V  VLDA T
Sbjct: 173 AYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT 232

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q + FH   G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL+PF
Sbjct: 233 GQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 292

Query: 302 VAKDF 306
             + F
Sbjct: 293 DPEAF 297


>gi|303283296|ref|XP_003060939.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
 gi|226457290|gb|EEH54589.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
          Length = 340

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 169/303 (55%), Gaps = 15/303 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLT 72
           ++ KG + T  KL   + +++S  RL+D V E   ELE++LI  D G   A  ++E +  
Sbjct: 35  RVFKGTSKTREKLSY-MDEMLSLWRLED-VEETLDELEEVLISVDFGPTTAMDVIEVVRE 92

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLM------PLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +    ++S   +V   +   I  +L       P   P        P VI+VVGVNG GKT
Sbjct: 93  RVEKGEISTGPQVKQALKTAIVDILQRPNGGEPGCAPLALS-EEAPTVIMVVGVNGAGKT 151

Query: 126 TVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T +GKLS + + ++G KVML  GDTFR+AA +QL  WA+R+       + G    A+ Y+
Sbjct: 152 TTLGKLSNRFALESGAKVMLVPGDTFRAAAAEQLATWAERSDGVMATYKEGMKPGAVCYQ 211

Query: 185 AFKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           A ++A +   VD+++ DT+GRLH N  LM  +  + R + +    APH  L VLD T+G 
Sbjct: 212 AVQEAIKMGDVDIVLADTSGRLHTNCDLMDELAGVRRSITKSLASAPHETLLVLDGTSGL 271

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N L Q   F      TGLI+TK+DGTARGG ++ +V    IPV F+GVGE + DL+ F  
Sbjct: 272 NMLNQARAFSEAVDVTGLILTKLDGTARGGAVVSVVNEMNIPVKFVGVGEKMEDLQTFEP 331

Query: 304 KDF 306
           + F
Sbjct: 332 ESF 334


>gi|284032677|ref|YP_003382608.1| signal recognition particle-docking protein FtsY [Kribbella flavida
           DSM 17836]
 gi|283811970|gb|ADB33809.1| signal recognition particle-docking protein FtsY [Kribbella flavida
           DSM 17836]
          Length = 393

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/293 (39%), Positives = 175/293 (59%), Gaps = 4/293 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    A +   L +G+  ++S  +LD+   E++E  LI +D+GV   Q++VE L T+  
Sbjct: 97  RLRAKLARSQSSLGKGLLALLSRDKLDEEAWEDIETTLITADVGVTPTQELVERLRTRVR 156

Query: 76  AKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSK 133
            + VS ++    + E +  ++ P L +    D    +P V++VVGVNG GKTT +GKL++
Sbjct: 157 VEGVSGEQARAILREELITLVDPTLDRSLKVDRKDGKPAVVMVVGVNGTGKTTTVGKLAR 216

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            +      V+L A DTFR+AA DQL+ W +R     V    G D A++A++A KQ   + 
Sbjct: 217 VLVAEDKHVVLGAADTFRAAAADQLQTWGERVGVRTVRGPEGGDPASIAFDAVKQGIDES 276

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DV+++DTAGRLH    LM  +GK+ RV+++        VL V+DATTGQN L Q  +F 
Sbjct: 277 ADVVLVDTAGRLHTKIGLMDELGKVKRVIEKT--AEVDEVLLVIDATTGQNGLTQARVFA 334

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            V   TGL++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF A+ F
Sbjct: 335 EVINVTGLVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEAEQF 387


>gi|154505346|ref|ZP_02042084.1| hypothetical protein RUMGNA_02861 [Ruminococcus gnavus ATCC 29149]
 gi|153794389|gb|EDN76809.1| hypothetical protein RUMGNA_02861 [Ruminococcus gnavus ATCC 29149]
          Length = 316

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 178/301 (59%), Gaps = 4/301 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            E   + R+L  G   T   +  G+  I     ++D+   EELE+ LI  D+GV    +I
Sbjct: 2   EEKKGFFRRLVSGLTKTRDNIVSGMDSIFHGFSKIDEDFYEELEETLIMGDLGVHTTTEI 61

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKT 125
           +E+L  +R  K+  ++        LI  +   L      ++F  R  V+ V+GVNGVGKT
Sbjct: 62  IEDL--RRKVKEQHIKEPAACRQLLIDSIKEQLDVGETAYEFEERQSVVFVIGVNGVGKT 119

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K  +   +V+LAA DTFR+AA +QLK WA+R   + +  + G+D A++ ++A
Sbjct: 120 TTIGKLAGKFREQHKRVILAAADTFRAAAGEQLKEWANRAEVEMIGGQEGADPASVVFDA 179

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K D+L+ DTAGRLHN   LM  + K+ RV+ R    A    L VLDATTGQNA
Sbjct: 180 VAAARARKADILLCDTAGRLHNKKNLMEELKKINRVIDREYQEAYRETLVVLDATTGQNA 239

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q   F+ VA  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I+DL+ F A +
Sbjct: 240 LAQAREFNEVADITGVILTKMDGTAKGGIAVAIQSELGIPVKYIGVGESIDDLQKFDADE 299

Query: 306 F 306
           F
Sbjct: 300 F 300


>gi|122920835|pdb|2J7P|D Chain D, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
           And Ftsy
 gi|122920836|pdb|2J7P|E Chain E, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
           And Ftsy
          Length = 283

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 119/185 (64%)

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT I KL +   + G KVM  AGDTFR+A   QL  W  R S   +    G+D AAL
Sbjct: 92  VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAAL 151

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A +  +A+  D+L +DTAGRLH    LM  + K+ R + + DP  P  V  VLDA T
Sbjct: 152 AYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT 211

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q + FH   G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL+PF
Sbjct: 212 GQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 271

Query: 302 VAKDF 306
             + F
Sbjct: 272 DPEAF 276


>gi|118137450|pdb|2CNW|D Chain D, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
 gi|118137451|pdb|2CNW|E Chain E, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
 gi|118137452|pdb|2CNW|F Chain F, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
 gi|126030874|pdb|2IYL|D Chain D, Structure Of An Ftsy:gdp Complex
          Length = 284

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 119/185 (64%)

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT I KL +   + G KVM  AGDTFR+A   QL  W  R S   +    G+D AAL
Sbjct: 93  VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAAL 152

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A +  +A+  D+L +DTAGRLH    LM  + K+ R + + DP  P  V  VLDA T
Sbjct: 153 AYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT 212

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q + FH   G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL+PF
Sbjct: 213 GQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 272

Query: 302 VAKDF 306
             + F
Sbjct: 273 DPEAF 277


>gi|42543233|pdb|1OKK|D Chain D, Homo-Heterodimeric Complex Of The Srp Gtpases
 gi|315113202|pdb|2XKV|D Chain D, Atomic Model Of The Srp-Ftsy Early Conformation
          Length = 303

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 119/185 (64%)

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT I KL +   + G KVM  AGDTFR+A   QL  W  R S   +    G+D AAL
Sbjct: 112 VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAAL 171

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A +  +A+  D+L +DTAGRLH    LM  + K+ R + + DP  P  V  VLDA T
Sbjct: 172 AYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT 231

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q + FH   G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL+PF
Sbjct: 232 GQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 291

Query: 302 VAKDF 306
             + F
Sbjct: 292 DPEAF 296


>gi|44887895|sp|P83749|FTSY_THEAQ RecName: Full=Cell division protein ftsY
 gi|151567970|pdb|2Q9A|A Chain A, Structure Of Apo Ftsy
 gi|151567971|pdb|2Q9A|B Chain B, Structure Of Apo Ftsy
 gi|151567972|pdb|2Q9B|A Chain A, Structure Of Ftsy:gmppnp Complex
 gi|151567973|pdb|2Q9B|B Chain B, Structure Of Ftsy:gmppnp Complex
 gi|151567974|pdb|2Q9C|A Chain A, Structure Of Ftsy:gmppnp With Mgcl Complex
 gi|151567975|pdb|2Q9C|B Chain B, Structure Of Ftsy:gmppnp With Mgcl Complex
 gi|38699377|gb|AAR27056.1| signal recognition receptor [Thermus aquaticus]
 gi|39598846|gb|AAR28967.1| FtsY [Thermus aquaticus]
          Length = 304

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 119/185 (64%)

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT I KL +   + G KVM  AGDTFR+A   QL  W  R S   +    G+D AAL
Sbjct: 113 VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAAL 172

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A +  +A+  D+L +DTAGRLH    LM  + K+ R + + DP  P  V  VLDA T
Sbjct: 173 AYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT 232

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q + FH   G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL+PF
Sbjct: 233 GQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 292

Query: 302 VAKDF 306
             + F
Sbjct: 293 DPEAF 297


>gi|294463860|gb|ADE77453.1| unknown [Picea sitchensis]
          Length = 199

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 91/197 (46%), Positives = 134/197 (68%), Gaps = 1/197 (0%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           ++VGVNG GKTT IGKL+ ++ + G+KV++AAGDTFR+AA DQL++WA RT ++ V  E 
Sbjct: 1   MIVGVNGGGKTTSIGKLAYRLKNEGIKVLMAAGDTFRAAASDQLEVWAKRTKSEIVIGEG 60

Query: 175 GS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                A++  +A ++A+ +  DV++ DT+GRLH +  LM  +    R + ++ P AP+ V
Sbjct: 61  EKVKPASVLSQAVRRAKEENFDVVLCDTSGRLHTDYALMEELIACKRAITKVLPSAPNEV 120

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLD TTG N L Q   F+ V G TG I+TK+DG+ARGG ++ +V    IPV F+G+GE
Sbjct: 121 LLVLDGTTGLNMLPQAREFNEVVGVTGFILTKLDGSARGGCVVSVVDELAIPVKFVGIGE 180

Query: 294 GINDLEPFVAKDFSAVI 310
            ++DL+PF A+ F   I
Sbjct: 181 QLDDLQPFDAEAFVNAI 197


>gi|320087981|emb|CBY97743.1| Cell division protein ftsY homolog [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 173

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 117/164 (71%)

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           MLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A+ VDVLI DTA
Sbjct: 1   MLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLIADTA 60

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++FH   G TG+ 
Sbjct: 61  GRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGIT 120

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF
Sbjct: 121 LTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDF 164


>gi|282850850|ref|ZP_06260224.1| signal recognition particle-docking protein FtsY [Lactobacillus
           gasseri 224-1]
 gi|282557802|gb|EFB63390.1| signal recognition particle-docking protein FtsY [Lactobacillus
           gasseri 224-1]
          Length = 301

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 153/259 (59%), Gaps = 5/259 (1%)

Query: 54  IRSDIGVAVAQKIVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           I SD+G   A+++ + L     L    + D   Q ++  + ++  K           D  
Sbjct: 35  IESDVGFETAEELTDSLRDEAKLQNAKSHDDLKQVIVEKLVDIYDKGGEGEDSKLADDPD 94

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P+V L VGVNG GKTT IGKL+K++ D+G  VM+ A DTFR+ A++QL  W  R   +
Sbjct: 95  AKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVE 154

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     +D A++ Y+  K+A+ + +D L++DTAGRL N   LM+ + K+ R +K++ P 
Sbjct: 155 VVTGPEKADPASVVYDGVKKAKDRGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPD 214

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P+ VL VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  
Sbjct: 215 QPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKL 274

Query: 289 LGVGEGINDLEPFVAKDFS 307
           +G+GE ++DL  F A+ F+
Sbjct: 275 VGLGEKVDDLANFDAEKFA 293


>gi|320096198|ref|ZP_08027786.1| cell division protein FtsY [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319976863|gb|EFW08618.1| cell division protein FtsY [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 305

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/293 (39%), Positives = 175/293 (59%), Gaps = 12/293 (4%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKD 78
           + S  L   I DI+S   L     EE+E+ L+ +D+G+    +++E L      ++    
Sbjct: 9   AASGALGRAIVDILSRGELKAADWEEIEESLLIADLGLEATDQLMEALKRRVAVEKVGDT 68

Query: 79  VSVQRVLYD-VSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             ++R+L + +  L+   +   + L KP   D    P  +L+VGVNG GKTT +GKL++ 
Sbjct: 69  AGIRRILREELLALVDPAMDRSLRLDKP-EADGRALPAAVLMVGVNGTGKTTTVGKLARV 127

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKK 193
           +   G  V+L A DTFR+AA DQL  W  R   D V SE  G+D A++A+EA K+  ++ 
Sbjct: 128 LVADGRTVLLGAADTFRAAAADQLATWGQRVGVDVVRSEREGADPASVAFEAVKEGASRG 187

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           VDV+++DTAGRL N S LM  +GK+ RV+ R  P     VL VLDATTGQN L+Q  +F 
Sbjct: 188 VDVVVVDTAGRLQNKSTLMDELGKIKRVMDRQAPVG--EVLLVLDATTGQNGLQQALVFA 245

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              G TG+++TK+DG+A+GG ++ +     +PV F+G+GEG +DL PF  + F
Sbjct: 246 EAVGVTGIVLTKLDGSAKGGIVVSVQRQLGVPVKFVGLGEGADDLAPFDPEGF 298


>gi|284931182|gb|ADC31120.1| signal recognition particle receptor ftsY [Mycoplasma gallisepticum
           str. F]
          Length = 348

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 174/316 (55%), Gaps = 17/316 (5%)

Query: 21  FASTSLKLKEGI-------TDIISSRR-----LDDGVREELEDLLIRSDIGVAVAQKIVE 68
           F +T  K  +G+       +DII+        L++   E+L D  ++ DIG    +KIV+
Sbjct: 31  FETTQEKFDDGLKKSSNSFSDIINQLSTKYVSLNEAFYEDLFDAFVQLDIGYNATKKIVD 90

Query: 69  ELLTK-RYAKDVS---VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            ++ + +Y K V    +++++ D   + +     ++   N+   HR +V LVVGVNGVGK
Sbjct: 91  AIVEEIKYQKVVDPTLIKQIIIDKLFVYYIQDSEVNIDLNYQ-DHRQNVFLVVGVNGVGK 149

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT I KL+        KV+L A DTFR+ AI QL IWA+R   D    E   D AA+ YE
Sbjct: 150 TTSIAKLANYYKKLNKKVLLIAADTFRAGAIQQLNIWAERLEVDIYKDESKKDPAAVIYE 209

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
               A+ +  D++I DT+GRL N   LM  + K+  V+++         L VLDATTGQ+
Sbjct: 210 GLNFAKQRDYDLVICDTSGRLQNKVNLMNELKKINNVIEKFIGRNVDETLLVLDATTGQS 269

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q ++FH V+  TG+I++KMD +++GG ++ I     IPV  +G+GE ++DL  F  +
Sbjct: 270 GLIQAKVFHEVSKITGIILSKMDSSSKGGIILGIKDLFNIPVKLIGLGEQLDDLVSFDLQ 329

Query: 305 DFSAVITGCLDYGEEK 320
            +   +T  L+   EK
Sbjct: 330 KYLISLTANLNLDYEK 345


>gi|161508236|ref|YP_001577669.1| cell division protein [Lactobacillus helveticus DPC 4571]
 gi|260101399|ref|ZP_05751636.1| signal recognition particle-docking protein FtsY [Lactobacillus
           helveticus DSM 20075]
 gi|160349225|gb|ABX27899.1| Cell division protein [Lactobacillus helveticus DPC 4571]
 gi|260084739|gb|EEW68859.1| signal recognition particle-docking protein FtsY [Lactobacillus
           helveticus DSM 20075]
 gi|328465666|gb|EGF36883.1| signal recognition particle-docking protein FtsY [Lactobacillus
           helveticus MTCC 5463]
          Length = 430

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/261 (37%), Positives = 152/261 (58%), Gaps = 9/261 (3%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-------WD 106
           I SD+G   A+++ +EL  +   ++   +  L  V  ++ K++    K  N       + 
Sbjct: 164 IESDVGYETAEQLTDELREEAKLQNAKSRDDLKKV--IVEKLVDLYDKDGNSEDEKLIYH 221

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              +P+V L VGVNG GKTT IGKL+K+  D G  V++AA DTFR+ A++QL  W  R  
Sbjct: 222 PEDKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVIMAAADTFRAGAVEQLVEWGKRVD 281

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              V  +  +D A++ Y+A ++A  +  D L++DTAGRL N   LMA + K+ R++K+L 
Sbjct: 282 VPVVTGKEKADPASVVYDATERAIKENADYLLVDTAGRLQNKKNLMAELEKIQRIIKKLL 341

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P  P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV
Sbjct: 342 PDQPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPV 401

Query: 287 YFLGVGEGINDLEPFVAKDFS 307
             +G+GE   DL  F A +++
Sbjct: 402 KLVGLGEKAEDLADFDAANYA 422


>gi|57900094|dbj|BAD88156.1| putative chloroplast SRP receptor cpFtsY precursor [Oryza sativa
           Japonica Group]
 gi|215736953|dbj|BAG95882.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215766594|dbj|BAG98698.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 199

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 90/197 (45%), Positives = 136/197 (69%), Gaps = 1/197 (0%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SE 173
           ++VGVNG GKTT +GKL+ +  + G+KV++AAGDTFR+AA DQL++WA+RT ++ V  ++
Sbjct: 1   MIVGVNGGGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDND 60

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +  A++  +A K+ + +  D+++ DT+GRLH N  LM  +    +V+ +  P AP+ +
Sbjct: 61  KKAKPASVLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEI 120

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLD TTG N L+Q   F+ V G TG ++TK+DGTARGG ++ +V    IPV F+GVGE
Sbjct: 121 LLVLDGTTGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGE 180

Query: 294 GINDLEPFVAKDFSAVI 310
           G+ DL+PF A+ F   I
Sbjct: 181 GMEDLQPFDAEAFVEAI 197


>gi|294660283|ref|NP_852953.2| signal recognition particle receptor ftsY [Mycoplasma gallisepticum
           str. R(low)]
 gi|284811939|gb|AAP56521.2| signal recognition particle receptor ftsY [Mycoplasma gallisepticum
           str. R(low)]
 gi|284930417|gb|ADC30356.1| signal recognition particle receptor ftsY [Mycoplasma gallisepticum
           str. R(high)]
          Length = 348

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 174/316 (55%), Gaps = 17/316 (5%)

Query: 21  FASTSLKLKEGI-------TDIISSRR-----LDDGVREELEDLLIRSDIGVAVAQKIVE 68
           F +T  K  +G+       +DII+        L++   E+L D  ++ DIG    +KIV+
Sbjct: 31  FETTQEKFDDGLKKSSNSFSDIINQLSTKYVSLNEAFYEDLFDAFVQLDIGYNATKKIVD 90

Query: 69  ELLTK-RYAKDVS---VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            ++ + +Y K V    +++++ D   + +     ++   N+   HR +V LVVGVNGVGK
Sbjct: 91  AIVEEIKYQKVVDPTLIKQIIIDKLFVYYIQDSEVNIDLNYQ-DHRQNVFLVVGVNGVGK 149

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT I KL+        K++L A DTFR+ AI QL IWA+R   D    E   D AA+ YE
Sbjct: 150 TTSIAKLANYYKKLNKKILLIAADTFRAGAIQQLNIWAERLEVDIYKDESKKDPAAVIYE 209

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
               A+ +  D++I DT+GRL N   LM  + K+  V+++         L VLDATTGQ+
Sbjct: 210 GLNFAKQRDYDLVICDTSGRLQNKVNLMNELKKINNVIEKFIGRNVDETLLVLDATTGQS 269

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q ++FH V+  TG+I++KMD +++GG ++ I     IPV  +G+GE ++DL  F  +
Sbjct: 270 GLIQAKVFHEVSKITGIILSKMDSSSKGGIILGIKDLFNIPVKLIGLGEQLDDLVSFDLQ 329

Query: 305 DFSAVITGCLDYGEEK 320
            +   +T  L+   EK
Sbjct: 330 KYLISLTANLNLDYEK 345


>gi|156743415|ref|YP_001433544.1| signal recognition particle-docking protein FtsY [Roseiflexus
           castenholzii DSM 13941]
 gi|156234743|gb|ABU59526.1| signal recognition particle-docking protein FtsY [Roseiflexus
           castenholzii DSM 13941]
          Length = 326

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/270 (39%), Positives = 156/270 (57%), Gaps = 12/270 (4%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-- 100
           D + ++LE LLI++D+GV     +V    TK       V+R       L  +M+  L   
Sbjct: 55  DELWDDLEALLIQADVGVETTMYLVNR--TKDRCNRYGVKRAREARDMLKAEMVRVLQEQ 112

Query: 101 ---KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAID 156
              +P N +    P ++LVVGVNG GKTT+I KL+ ++ +  G +V+LAAGDTFR+AA +
Sbjct: 113 ERRQPVNAN----PSIVLVVGVNGAGKTTLIAKLAYRLKNQFGKRVLLAAGDTFRAAATE 168

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL+ WA+R     +    G+D  A+ Y+A +       DVLIIDTAGRLH  + LM  + 
Sbjct: 169 QLETWAERVGVPVISRGQGADPGAVVYDAIEAVSGGDFDVLIIDTAGRLHAKTNLMLELQ 228

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+  +++R  P APH VL V+DATTGQN + Q + F      T + +TK+DGTA+GG   
Sbjct: 229 KLRNIIRRKFPDAPHEVLLVIDATTGQNGVLQAKSFLKAVDVTDVAVTKLDGTAKGGIAF 288

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            I    + P+ ++G GE + DL  F A+ F
Sbjct: 289 AIAQDIERPIRYVGTGEKMTDLALFDAETF 318


>gi|253583750|ref|ZP_04860948.1| cell division protein ftsY [Fusobacterium varium ATCC 27725]
 gi|251834322|gb|EES62885.1| cell division protein ftsY [Fusobacterium varium ATCC 27725]
          Length = 356

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/270 (43%), Positives = 166/270 (61%), Gaps = 19/270 (7%)

Query: 18  TKGFASTSLKLK-----EGI-----TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +KGF  TSLK K     EG+     + I+    +D  + EELED+LI+SDIG+ +  KIV
Sbjct: 83  SKGFF-TSLKDKLFKSREGLFGKLKSFILGRSVIDFEMYEELEDILIQSDIGMDMTVKIV 141

Query: 68  ---EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
              E+ + KR  KD    + +Y V  E++   L+        +   + +VILVVGVNGVG
Sbjct: 142 GALEKEVKKRGIKD---PKDIYPVLKEVMEGFLIKEGNDIVIE-DGKLNVILVVGVNGVG 197

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K    G KV+L AGDTFR+AAI+QL+ WA R+ A+ V S  GSD  A+ +
Sbjct: 198 KTTTIGKLASKFIKDGKKVILGAGDTFRAAAIEQLEEWAKRSGAEIVKSTQGSDPGAVVF 257

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +    A+++  D+ IIDTAGRLHN + LM  + K+  ++K+      +  + V+D TTGQ
Sbjct: 258 DTLAAAESRGADIAIIDTAGRLHNKNNLMKELEKIHNIIKKKLGDQHYESILVIDGTTGQ 317

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
           N L Q ++F+ V   TG I+TK+DGTA+GG
Sbjct: 318 NGLSQAKVFNEVTDLTGFIITKLDGTAKGG 347


>gi|160915312|ref|ZP_02077525.1| hypothetical protein EUBDOL_01321 [Eubacterium dolichum DSM 3991]
 gi|158433111|gb|EDP11400.1| hypothetical protein EUBDOL_01321 [Eubacterium dolichum DSM 3991]
          Length = 323

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/295 (39%), Positives = 168/295 (56%), Gaps = 13/295 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LS + K  + F+    +L  G       R +D+   EEL   L+ +D+G+  AQK+V+E+
Sbjct: 21  LSGLDKSKRSFSERIRRLSLGF------RGIDEEFLEELMVALLEADLGIKTAQKVVDEV 74

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH----VILVVGVNGVGKTT 126
             +   + +S      ++SE + ++L  +   +  +  H       VI +VGVNG GKTT
Sbjct: 75  ENRALDRKLSS---FDEISECLVEVLRDMYVSYEDEAMHINEQGVTVIYMVGVNGSGKTT 131

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+K   D G KV+LAA DTFR+ A+DQL  WADR   D +      D +A+  +A 
Sbjct: 132 TTAKLTKSFLDEGKKVVLAAADTFRAGAVDQLATWADRLGVDCIKGRENGDPSAVIVDAA 191

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+    D LI DTAGRL N + LM  + KM RV++R    APH V  VLDATTGQN +
Sbjct: 192 RFAKEHHADYLICDTAGRLQNKTNLMNELSKMRRVVEREIEGAPHEVWLVLDATTGQNGI 251

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            Q ++F      TG+I+TK+DGTA+GG +I I     +PV ++G+GE + DL PF
Sbjct: 252 SQAKIFTETTNVTGIILTKLDGTAKGGIVIAIRDLLGLPVKYIGLGETLEDLRPF 306


>gi|242310360|ref|ZP_04809515.1| signal recognition particle protein [Helicobacter pullorum MIT
           98-5489]
 gi|239522758|gb|EEQ62624.1| signal recognition particle protein [Helicobacter pullorum MIT
           98-5489]
          Length = 294

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 103/271 (38%), Positives = 158/271 (58%), Gaps = 10/271 (3%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI +D+   + + I+  L  +    ++ V  +     E  +  +   +K  N 
Sbjct: 29  KEELEEVLIATDMDYDLIEMILSPLGEEISKNELEVALLRLFRGESYYDKVQ--AKQVNA 86

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               +P V L+VGVNG GKTT I KL+      G  V+L AGDTFR+AAI+QL +W +R 
Sbjct: 87  ----KPCVDLIVGVNGAGKTTTIAKLANLYQKQGKSVILGAGDTFRAAAIEQLSLWGERL 142

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               + S+ G D +A+A++    A AK +D +IIDTAGRLHN S L   + K++R+  + 
Sbjct: 143 KIPVISSKQGHDPSAVAFDTITSAAAKNLDCVIIDTAGRLHNQSNLQNELQKIVRICNKA 202

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
              APH  + +LD T G ++L Q ++F   + G  G+I+TK+DGT++GG +  I+ T ++
Sbjct: 203 KEGAPHRKILILDGTQGTSSLDQAKIFSQTLGGVDGVIITKLDGTSKGGAIFSIIHTLRV 262

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ ++GVGEG  DL  F   D S  I   LD
Sbjct: 263 PILYIGVGEGAEDLIEF---DESQYIQTILD 290


>gi|206900990|ref|YP_002250665.1| signal recognition particle-docking protein FtsY [Dictyoglomus
           thermophilum H-6-12]
 gi|206740093|gb|ACI19151.1| signal recognition particle-docking protein FtsY [Dictyoglomus
           thermophilum H-6-12]
          Length = 297

 Score =  178 bits (452), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 172/289 (59%), Gaps = 13/289 (4%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           KGFA       E + +I+   R+DD + +ELE   I+SD+G+ +  +I+ E+  ++    
Sbjct: 11  KGFA-------ERLQNILKFSRVDDNLLDELEMEFIQSDLGLELTNEIISEIRKRKITNT 63

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
             ++  L++  + I + L      +  D    R +V++ +GVNG GKT+ +GK +  +  
Sbjct: 64  PELRDFLFNYLKAILENL-----DYRLDLLEDRLNVVVFIGVNGTGKTSTVGKFAYYLKG 118

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            G   ++AA DTFR+AAIDQ+KIW +R   + +  + G+D  A+ + A + A+A+  +VL
Sbjct: 119 LGYSPIIAAADTFRAAAIDQVKIWGERVGVEVIAQKEGADPGAVVFNAIEAARARNKNVL 178

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGR+H  S L+  + K+ RV++R   + P   L V+DAT GQN +RQVE FH    
Sbjct: 179 LVDTAGRMHTKSNLIEELKKINRVVERTLGYGPSENLIVIDATLGQNVIRQVETFHNAVN 238

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            TG ++TK+DGTA+GG +  +V    IPV  + +GEG+ DL+ F   +F
Sbjct: 239 LTGAVLTKLDGTAKGGVIFNVVRRFNIPVKLVTIGEGVEDLKVFDPNEF 287


>gi|284992402|ref|YP_003410956.1| signal recognition particle-docking protein FtsY [Geodermatophilus
           obscurus DSM 43160]
 gi|284065647|gb|ADB76585.1| signal recognition particle-docking protein FtsY [Geodermatophilus
           obscurus DSM 43160]
          Length = 407

 Score =  178 bits (452), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 178/305 (58%), Gaps = 9/305 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    A +   L  G+  +++  RL +   EE+E+ L+ +D+GVA  Q+IV+ L T+  
Sbjct: 107 RLRSRLARSQSNLGRGLLTVLARERLTEDDWEEVEETLLAADVGVAATQQIVDRLRTQSM 166

Query: 76  ----AKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGK 130
               A    ++R+L  V EL   +   L +    D    RP + LVVGVNG GKTT +GK
Sbjct: 167 VLATASGPELRRLL--VRELTAVLGPDLDRSLGVDRHDGRPGIALVVGVNGAGKTTTVGK 224

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++ +   G  V+L A DTFR+AA DQL+ W +R     V    G+D A++A++A +   
Sbjct: 225 IARVLVGDGKSVVLGAADTFRAAAADQLETWGERVGVLTVRGREGADPASVAFDAARTGI 284

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             +VD ++IDTAGRLH    LM  +GK+ RV++++ P     VL VLDATTGQN + Q  
Sbjct: 285 EGEVDTVVIDTAGRLHTKGGLMDELGKIRRVVEKVAPVT--EVLLVLDATTGQNGVVQAR 342

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F      TG+++TK+DGTA+GG ++ +     IPV  +G+GEG +DL PF  + F+  +
Sbjct: 343 VFTEAVTVTGVVLTKLDGTAKGGIVVAVQRELGIPVKLVGLGEGADDLAPFEPEAFAEAL 402

Query: 311 TGCLD 315
            G  D
Sbjct: 403 VGGAD 407


>gi|300868308|ref|ZP_07112936.1| signal recognition particle-docking protein FtsY [Oscillatoria sp.
           PCC 6506]
 gi|300333688|emb|CBN58120.1| signal recognition particle-docking protein FtsY [Oscillatoria sp.
           PCC 6506]
          Length = 644

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/323 (34%), Positives = 186/323 (57%), Gaps = 18/323 (5%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ E ++W++KL +G   T   L   +  I+    L+     E+E LL+++D+GV    
Sbjct: 325 QISFEEITWLQKLRQGLERTRRSLINQLKAIVGQGPLNQDAVIEIESLLLQADVGVEATD 384

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP------------- 111
            IV  L  K   + +  ++ +  + +L+ ++L    KP     S  P             
Sbjct: 385 IIVNALQQKLREEVLPPEQAIAYLKKLLRELL---DKPCQESASGNPAYSLTFAPEKDTL 441

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           ++ L+VGVNG GKTT IGK++     +  + ++AA DTFR+AA++Q+K+W  R+  + + 
Sbjct: 442 NIWLIVGVNGAGKTTTIGKIAHLAQKSDYRTLIAAADTFRAAAVEQVKVWGARSDVEVIA 501

Query: 172 SE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
           +    +D AA+ ++A   AQ++  ++LI+DTAGRL N   LM  + K+ R++ +  P A 
Sbjct: 502 NPGKNTDPAAVVFDAIAAAQSRNTELLIVDTAGRLQNKKNLMDELSKIRRIIDKKAPGAV 561

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VLDAT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G
Sbjct: 562 VESLLVLDATLGQNGLRQAEVFSEAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIG 621

Query: 291 VGEGINDLEPFVAKDF-SAVITG 312
           VGE I DL PF + +F  A+++G
Sbjct: 622 VGESIEDLRPFSSYEFVEALLSG 644


>gi|224419058|ref|ZP_03657064.1| signal recognition particle protein [Helicobacter canadensis MIT
           98-5491]
 gi|253827998|ref|ZP_04870883.1| cell division protein ftsY [Helicobacter canadensis MIT 98-5491]
 gi|313142566|ref|ZP_07804759.1| signal recognition particle protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511404|gb|EES90063.1| cell division protein ftsY [Helicobacter canadensis MIT 98-5491]
 gi|313131597|gb|EFR49214.1| signal recognition particle protein [Helicobacter canadensis MIT
           98-5491]
          Length = 295

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/271 (37%), Positives = 156/271 (57%), Gaps = 10/271 (3%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI +D+   + + I+  L  +    ++ V  +     E  +  +         
Sbjct: 29  KEELEEVLIATDMDYDLIELILSPLGDEISKNELEVALLRLFRGESYYDKVQA------K 82

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               +P V L+VGVNG GKTT I KL+ +    G  V+L AGDTFR+AAI+QL +W +R 
Sbjct: 83  QVEAKPCVDLIVGVNGAGKTTTIAKLANRYKKQGKSVILGAGDTFRAAAIEQLTLWGNRL 142

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               + S+ G D +A+A++    A AK +D +IIDTAGRLHN S L   + K++R+  + 
Sbjct: 143 GIPVIASKQGHDPSAVAFDTITSAVAKGIDCVIIDTAGRLHNQSNLQNELQKILRICNKA 202

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
              APH  + +LD T G ++L Q ++F   + G  G+I+TK+DGT++GG +  I+ T ++
Sbjct: 203 KEGAPHRKILILDGTQGTSSLDQAKVFSQTLGGIDGVIITKLDGTSKGGAIFSIIYTLRV 262

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ ++GVGEG  DL  F   D S  I   LD
Sbjct: 263 PILYIGVGEGAEDLVEF---DESKYIQTILD 290


>gi|282854590|ref|ZP_06263925.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes J139]
 gi|282582172|gb|EFB87554.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes J139]
 gi|314981871|gb|EFT25964.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL110PA3]
          Length = 396

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/293 (39%), Positives = 178/293 (60%), Gaps = 14/293 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S       
Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS---AH 161

Query: 88  VSELIHKMLMPLSKP-----FNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
             E++H  L+ L  P      N D    +P V+L+VGVNG GKTT  GKL++ +   G  
Sbjct: 162 AREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKT 221

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +      VDV+++DT
Sbjct: 222 VLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLVDT 281

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   TG+
Sbjct: 282 AGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVTGI 339

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           +++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   +TG +
Sbjct: 340 VLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 389


>gi|195952989|ref|YP_002121279.1| signal recognition particle-docking protein FtsY [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195932601|gb|ACG57301.1| signal recognition particle-docking protein FtsY [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 463

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/282 (38%), Positives = 164/282 (58%), Gaps = 9/282 (3%)

Query: 32  ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL 91
           +  I  +R++D+ + EELE+ LIR+DI V +   IVE L  K+ A   ++Q        L
Sbjct: 178 LNTIFINRKIDEELFEELEEKLIRADINVKLVLNIVENL--KKEAIKRNLQTAEQLKPLL 235

Query: 92  IHKMLMPLSKPFNWDF-------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
             ++L  +    N D          +P VIL +GVNG GKTT IGKL+        KV+L
Sbjct: 236 KEELLSIIRNCGNKDLFFELLNEKEKPFVILFLGVNGSGKTTTIGKLASIYKAQNKKVLL 295

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            A DTFR+AAI+QL++WA R   D V  + G+D A++A+EA K+   +  DV+IIDTAGR
Sbjct: 296 GAADTFRAAAIEQLEVWAQRAQVDIVKKQEGADPASVAFEATKKGLEEDYDVVIIDTAGR 355

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LH    L+  + K+ + +++    AP   L V+D+T GQN++ Q ++F       GL++T
Sbjct: 356 LHTKEPLINELRKIKKSIQKAYEKAPQKALLVIDSTIGQNSISQAKIFKEAVDINGLVIT 415

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           K+DGT++GG +I I     +P+Y    GE + DL+PF  + F
Sbjct: 416 KLDGTSKGGSVISICKDLALPIYMTADGERMEDLDPFDPETF 457


>gi|314966099|gb|EFT10198.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL082PA2]
 gi|327328024|gb|EGE69793.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL103PA1]
          Length = 393

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/293 (39%), Positives = 178/293 (60%), Gaps = 14/293 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S       
Sbjct: 102 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS---AH 158

Query: 88  VSELIHKMLMPLSKP-----FNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
             E++H  L+ L  P      N D    +P V+L+VGVNG GKTT  GKL++ +   G  
Sbjct: 159 AREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKT 218

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +      VDV+++DT
Sbjct: 219 VLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLVDT 278

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   TG+
Sbjct: 279 AGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVTGI 336

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           +++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   +TG +
Sbjct: 337 VLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 386


>gi|152992192|ref|YP_001357913.1| signal recognition particle receptor FtsY [Sulfurovum sp. NBC37-1]
 gi|151424053|dbj|BAF71556.1| signal recognition particle receptor FtsY [Sulfurovum sp. NBC37-1]
          Length = 288

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/259 (35%), Positives = 154/259 (59%), Gaps = 13/259 (5%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
            ED+L+ +D+   +A+++++ L  K       + R+     +  + ++       +W  S
Sbjct: 32  FEDILLEADVNYELAERLLDALPEK-------INRI-----QAFNSLISVFQYKADWKES 79

Query: 109 H-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           + +P+V +++GVNG GKTT I KL+ +    G  V+L AGDTFR+AAI+QL  WAD+   
Sbjct: 80  NAKPYVEMIIGVNGAGKTTTIAKLAYRYQQEGKGVILGAGDTFRAAAIEQLIRWADKLEV 139

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V +  G D +A+ Y+  + A+A+++D +IIDTAGRLH  + L   + KMIRV  +   
Sbjct: 140 PIVSTRQGHDPSAVVYDTIEAAKARRLDNVIIDTAGRLHTQTNLSEELKKMIRVAGKAME 199

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            APH  + +LD T G +++ Q   F  + G  G+I+TK+DGTA+GG ++ I    ++P++
Sbjct: 200 GAPHRKMLILDGTQGSSSINQARAFDEMIGIDGIIITKLDGTAKGGSVLSIADELQMPIF 259

Query: 288 FLGVGEGINDLEPFVAKDF 306
           ++G GE   DL  F A ++
Sbjct: 260 YIGTGEQPKDLIRFKANEY 278


>gi|331091061|ref|ZP_08339903.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330405283|gb|EGG84819.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 314

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/306 (40%), Positives = 184/306 (60%), Gaps = 10/306 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  E   + ++L  G   T   +   +  I +   ++D+   EELE++LI  D+GV    
Sbjct: 1   MGEEKKGFFKRLVSGLTKTRDSIVSSMDSIFNGFSKIDEEFYEELEEVLIMGDLGVQATY 60

Query: 65  KIVEELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++++L  K    R  + +  +++L D   +  +M +  +    ++F  R  V+LV+GVN
Sbjct: 61  AVLDDLRAKVKEQRIKEPMECKQLLID--SIKEQMRVGETA---YEFEDRTSVVLVIGVN 115

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ K+     KV+LAA DTFR+AA +QL  WA R  A+ +  + G+D AA
Sbjct: 116 GVGKTTTIGKLAGKLRANNKKVVLAAADTFRAAAGEQLVEWARRADAELIGGQDGADPAA 175

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A   A+A+  DVL+ DTAGRLHN   LM  + K+ RVL+R  P A    L VLD T
Sbjct: 176 IVYDAVAAAKARHADVLLCDTAGRLHNKKNLMEELKKINRVLEREYPEAYRETLVVLDGT 235

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q   F+ VA  TG+++TKMDG+A+GG  + I    KIPV ++GVGE I+DL+ 
Sbjct: 236 TGQNALAQAREFNEVADITGIVLTKMDGSAKGGIAVAIQSELKIPVKYIGVGESIDDLQK 295

Query: 301 FVAKDF 306
           F + +F
Sbjct: 296 FDSDEF 301


>gi|315094950|gb|EFT66926.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL060PA1]
          Length = 393

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/293 (39%), Positives = 178/293 (60%), Gaps = 14/293 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S       
Sbjct: 102 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS---AH 158

Query: 88  VSELIHKMLMPLSKP-----FNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
             E++H  L+ L  P      N D    +P V+L+VGVNG GKTT  GKL++ +   G  
Sbjct: 159 AREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKT 218

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +      VDV+++DT
Sbjct: 219 VLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLVDT 278

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   TG+
Sbjct: 279 AGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVTGI 336

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           +++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   +TG +
Sbjct: 337 VLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 386


>gi|329943127|ref|ZP_08291901.1| signal recognition particle-docking protein FtsY [Chlamydophila
           psittaci Cal10]
 gi|332287710|ref|YP_004422611.1| putative cell division protein [Chlamydophila psittaci 6BC]
 gi|313848284|emb|CBY17285.1| putative cell division protein [Chlamydophila psittaci RD1]
 gi|325506713|gb|ADZ18351.1| putative cell division protein [Chlamydophila psittaci 6BC]
 gi|328814674|gb|EGF84664.1| signal recognition particle-docking protein FtsY [Chlamydophila
           psittaci Cal10]
 gi|328914963|gb|AEB55796.1| signal recognition particle-docking protein FtsY [Chlamydophila
           psittaci 6BC]
          Length = 284

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/272 (36%), Positives = 150/272 (55%), Gaps = 8/272 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-- 96
           + L   + E  E L   +D G  + +++   L   R     +V+ +   VS L+ + L  
Sbjct: 15  KTLSPDLLEFTESLFYEADFGSDLTEELCSRLRKCRKPDASTVKDL---VSSLLRETLDN 71

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           +P  +P        P V L++G NG GKTT + KL+        KVM+ A DTFRSA +D
Sbjct: 72  LPHVEPCQ---GQAPMVSLILGTNGSGKTTTVAKLAHYHMSRSEKVMIVATDTFRSAGMD 128

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           Q++ WAD+    FV  + G D AA+AY+    A ++  D ++IDT+GRLH ++ L+  + 
Sbjct: 129 QMRCWADKLGCGFVSGKPGGDPAAIAYDGIASAMSRGYDRVLIDTSGRLHTHTNLLNELS 188

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K++ V  ++ P +PH  L  +DAT G N + QV +FH     +GLI+TK+DG+A+GG L 
Sbjct: 189 KIVSVCNKIHPGSPHERLMTIDATLGGNVIEQVRVFHDAIPLSGLILTKVDGSAKGGTLF 248

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            +    KIP  F+G GE I DLE F    F A
Sbjct: 249 RVAKQLKIPTKFVGYGELIGDLEEFHIDRFLA 280


>gi|309791904|ref|ZP_07686387.1| signal recognition particle-docking protein FtsY [Oscillochloris
           trichoides DG6]
 gi|308226076|gb|EFO79821.1| signal recognition particle-docking protein FtsY [Oscillochloris
           trichoides DG6]
          Length = 322

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/267 (40%), Positives = 157/267 (58%), Gaps = 6/267 (2%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           D + +ELE+ LI+ D+G+     +V    TK        ++   +V +++   ++   + 
Sbjct: 53  DELWDELEESLIQGDVGLETTLYLVNR--TKDRVNRHGTKKA-REVRDMLKAEMVRTFQE 109

Query: 103 F--NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLK 159
           F      + RP++ILVVGVNG GKTT+I KL+ +     G KV+LAAGDTFR+AA +QL+
Sbjct: 110 FAGQKTINARPYIILVVGVNGAGKTTLIAKLAHRYKHRFGKKVLLAAGDTFRAAATEQLE 169

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            WA R     V    G+D+AA+ Y+    A  + VDVLIIDTAGRL     LM  + K+ 
Sbjct: 170 TWAARADVPCVSMGQGADSAAVVYKGLDAALEQNVDVLIIDTAGRLQAKYNLMKELEKIR 229

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            +++R  P APH VL V+DATTGQN + Q + F   AG T + +TK+DGTA+GG    I 
Sbjct: 230 NIIQRKIPDAPHEVLLVIDATTGQNGVLQAKAFLQSAGVTDVAVTKLDGTAKGGIAFAIS 289

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + P+ ++G GE + DL  F ++ F
Sbjct: 290 QDIERPIRYIGTGEKMEDLAMFDSQSF 316


>gi|295109855|emb|CBL23808.1| signal recognition particle-docking protein FtsY [Ruminococcus
           obeum A2-162]
          Length = 296

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/292 (40%), Positives = 171/292 (58%), Gaps = 10/292 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++ E   + ++L  G   T   +  G   I S    +D+   EELE++LI  DIG+    
Sbjct: 1   MSEEKKGFFKRLVSGLTKTRDNIVAGFDSIFSGYSSIDEDFYEELEEILIMGDIGINATS 60

Query: 65  KIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            I+E L  +  A+ +      +++L  ++ +  +M +  ++   ++F +R  VILV+GVN
Sbjct: 61  SIIEHLKEQVSAQHIKNPMECKQLL--INSIKEQMRVDSTE---YEFENRKSVILVIGVN 115

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT +GKL+ K+ D G KV+LAA DTFR+AA +QL  WA R   D +  + G+D A+
Sbjct: 116 GVGKTTSVGKLAGKLKDQGKKVILAAADTFRAAAGEQLAQWASRAGVDLIGGQEGADPAS 175

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A   A+A+  DVLI DTAGRLHN   LM  + K+ R+L+R  P A    L VLD T
Sbjct: 176 IVYDAVAAAKARNADVLICDTAGRLHNKKNLMEELRKIYRILEREYPEAYLETLVVLDGT 235

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           TGQNAL Q + F  VA   G+I+TK+DGTA+GG  + I     IPV     G
Sbjct: 236 TGQNALAQAKQFAEVANVNGIILTKLDGTAKGGIAVAIQSELDIPVKIYRCG 287


>gi|307700126|ref|ZP_07637172.1| signal recognition particle-docking protein FtsY [Mobiluncus
           mulieris FB024-16]
 gi|307614675|gb|EFN93898.1| signal recognition particle-docking protein FtsY [Mobiluncus
           mulieris FB024-16]
          Length = 642

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 177/306 (57%), Gaps = 16/306 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S +R+L +  A    K    I  ++S   L++   E LED L+ +D GV    +++E+L 
Sbjct: 337 SRLRRLKERLAGKG-KFGRAILGVLSRADLEESDWEALEDELLSADFGVEATLELIEKLK 395

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS------HRPHVI--LVVGVNGV 122
           TK+    V   +   +V  +  +M+   L +  N D +      H  + +  L+VGVNG 
Sbjct: 396 TKQK---VIGTKSAKEVRRMAKRMIGDFLDRHANRDLNLDVPEGHEGNTVGVLIVGVNGG 452

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAAL 181
           GKTT +GKL++ +      V+L A DTFR+AA +QL+ W        + SE   +D A++
Sbjct: 453 GKTTTVGKLARFLVANRKSVVLGAADTFRAAAGEQLETWGSHVGVPVIRSEKDKADPASV 512

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K A+    DV++IDTAGRL N + LM  +GK+ RV ++  P     VL V+DATT
Sbjct: 513 AFDAAKAARDNSADVVLIDTAGRLQNKAGLMDELGKIKRVAEKQVPIT--EVLLVIDATT 570

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q ++F    G TG+++TK+DG+A+GG ++ +     IPV  +G+GEG +DL PF
Sbjct: 571 GQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVVVALQRELGIPVKLVGLGEGPDDLAPF 630

Query: 302 VAKDFS 307
           V  DFS
Sbjct: 631 VPGDFS 636


>gi|269977119|ref|ZP_06184093.1| cell division protein FtsY [Mobiluncus mulieris 28-1]
 gi|269934950|gb|EEZ91510.1| cell division protein FtsY [Mobiluncus mulieris 28-1]
          Length = 633

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 177/306 (57%), Gaps = 16/306 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S +R+L +  A    K    I  ++S   L++   E LED L+ +D GV    +++E+L 
Sbjct: 328 SRLRRLKERLAGKG-KFGRAILGVLSRADLEESDWEALEDELLSADFGVEATLELIEKLK 386

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS------HRPHVI--LVVGVNGV 122
           TK+    V   +   +V  +  +M+   L +  N D +      H  + +  L+VGVNG 
Sbjct: 387 TKQK---VIGTKSAKEVRRMAKRMIGDFLDRHANRDLNLDVPEGHEGNTVGVLIVGVNGG 443

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAAL 181
           GKTT +GKL++ +      V+L A DTFR+AA +QL+ W        + SE   +D A++
Sbjct: 444 GKTTTVGKLARFLVANRKSVVLGAADTFRAAAGEQLETWGSHVGVPVIRSEKDKADPASV 503

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K A+    DV++IDTAGRL N + LM  +GK+ RV ++  P     VL V+DATT
Sbjct: 504 AFDAAKAARDNSADVVLIDTAGRLQNKAGLMDELGKIKRVAEKQVPIT--EVLLVIDATT 561

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q ++F    G TG+++TK+DG+A+GG ++ +     IPV  +G+GEG +DL PF
Sbjct: 562 GQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVVVALQRELGIPVKLVGLGEGPDDLAPF 621

Query: 302 VAKDFS 307
           V  DFS
Sbjct: 622 VPGDFS 627


>gi|227875975|ref|ZP_03994098.1| signal recognition particle receptor [Mobiluncus mulieris ATCC
           35243]
 gi|227843507|gb|EEJ53693.1| signal recognition particle receptor [Mobiluncus mulieris ATCC
           35243]
          Length = 653

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 177/306 (57%), Gaps = 16/306 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S +R+L +  A    K    I  ++S   L++   E LED L+ +D GV    +++E+L 
Sbjct: 348 SRLRRLKERLAGKG-KFGRAILGVLSRADLEESDWEALEDELLSADFGVEATLELIEKLK 406

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS------HRPHVI--LVVGVNGV 122
           TK+    V   +   +V  +  +M+   L +  N D +      H  + +  L+VGVNG 
Sbjct: 407 TKQK---VIGTKSAKEVRRMAKRMIGDFLDRHANRDLNLDVPEGHEGNTVGVLIVGVNGG 463

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAAL 181
           GKTT +GKL++ +      V+L A DTFR+AA +QL+ W        + SE   +D A++
Sbjct: 464 GKTTTVGKLARFLVANRKSVVLGAADTFRAAAGEQLETWGSHVGVPVIRSEKDKADPASV 523

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K A+    DV++IDTAGRL N + LM  +GK+ RV ++  P     VL V+DATT
Sbjct: 524 AFDAAKAARDNSADVVLIDTAGRLQNKAGLMDELGKIKRVAEKQVPIT--EVLLVIDATT 581

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q ++F    G TG+++TK+DG+A+GG ++ +     IPV  +G+GEG +DL PF
Sbjct: 582 GQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVVVALQRELGIPVKLVGLGEGPDDLAPF 641

Query: 302 VAKDFS 307
           V  DFS
Sbjct: 642 VPGDFS 647


>gi|308234554|ref|ZP_07665291.1| signal recognition particle-docking protein FtsY [Atopobium vaginae
           DSM 15829]
 gi|328944152|ref|ZP_08241617.1| cell division protein FtsY [Atopobium vaginae DSM 15829]
 gi|327492121|gb|EGF23895.1| cell division protein FtsY [Atopobium vaginae DSM 15829]
          Length = 303

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/266 (36%), Positives = 157/266 (59%), Gaps = 15/266 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF---NWD-FS 108
           L+ +D+G  +  +I ++L      +D++ Q+     +++   ++  L++ F   ++D FS
Sbjct: 41  LVMADVGAELTARICDDL------RDLAAQKGYTQAAQIQQALIDRLAQEFYTIDYDMFS 94

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P  I+ VG+NG GKTT +GKL+    ++G   ++   DTFR+AAI+QL +W  R    
Sbjct: 95  TYPGCIVFVGINGAGKTTTVGKLAFVCKESGHSCLIGGADTFRAAAIEQLDVWGKRAGVR 154

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V  E GSD A++ Y+  ++A A+  D+++IDTAGRLH +  LM  + K++  + R    
Sbjct: 155 VVTRERGSDPASICYDVLEEAAAQSTDLVLIDTAGRLHTSIDLMKELQKVV-AISRKRAS 213

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH--KIPV 286
            P  ++ VLDAT GQN L Q + FH      G+I+TK+DGTA+GG  I + ++H  K+P+
Sbjct: 214 MPVKIVLVLDATCGQNGLVQAQQFHESLSLDGIIVTKLDGTAKGG--IALRISHDLKLPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITG 312
              GVGE I DL+ F   +F A + G
Sbjct: 272 VRCGVGEQIEDLQRFDPYEFCAALVG 297


>gi|254479761|ref|ZP_05093040.1| signal recognition particle-docking protein FtsY [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034301|gb|EEB75096.1| signal recognition particle-docking protein FtsY [Carboxydibrachium
           pacificum DSM 12653]
          Length = 257

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/219 (44%), Positives = 139/219 (63%), Gaps = 4/219 (1%)

Query: 56  SDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+GV    KI++ L  K +  K     +V   +++ I+++L    +PF       P VI
Sbjct: 41  ADVGVDTTYKIIQSLKQKTKEEKIFEASKVRELLAQEIYEILQKDVEPF---VLTSPMVI 97

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNGVGKTT IGKL+      G  VM+ A DTFR+AAIDQL++WA R +   +  + 
Sbjct: 98  LIVGVNGVGKTTTIGKLAHLYKKQGKSVMMVAADTFRAAAIDQLEVWAKRVNCPIIKHQE 157

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD A++ ++  + A+A+ +DV+I DTAGRLHN   LM  + K+ +V+ R    A     
Sbjct: 158 GSDPASVVFDGLQSAKARGIDVVICDTAGRLHNKKNLMEELRKIRKVIDREYSEARVETF 217

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            VLDATTGQNAL+Q ++F  VA  TG+I+TK+DGTA+GG
Sbjct: 218 LVLDATTGQNALQQAKIFKEVADITGIILTKLDGTAKGG 256


>gi|306819256|ref|ZP_07452967.1| cell division protein FtsY [Mobiluncus mulieris ATCC 35239]
 gi|304648038|gb|EFM45352.1| cell division protein FtsY [Mobiluncus mulieris ATCC 35239]
          Length = 653

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 177/306 (57%), Gaps = 16/306 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S +R+L +  A    K    I  ++S   L++   E LED L+ +D GV    +++E+L 
Sbjct: 348 SRLRRLKERLAGKG-KFGRAILGVLSRADLEESDWEALEDELLSADFGVEATLELIEKLK 406

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS------HRPHVI--LVVGVNGV 122
           TK+    V   +   +V  +  +M+   L +  N D +      H  + +  L+VGVNG 
Sbjct: 407 TKQK---VIGTKSAKEVRRMAKRMIGDFLDRHANRDLNLDVPEGHEGNTVGVLIVGVNGG 463

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAAL 181
           GKTT +GKL++ +      V+L A DTFR+AA +QL+ W        + SE   +D A++
Sbjct: 464 GKTTTVGKLARFLVANRKSVVLGAADTFRAAAGEQLETWGSHVGVPVIRSEKDKADPASV 523

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K A+    DV++IDTAGRL N + LM  +GK+ RV ++  P     VL V+DATT
Sbjct: 524 AFDAAKAARDNSADVVLIDTAGRLQNKAGLMDELGKIKRVAEKQVPIT--EVLLVIDATT 581

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q ++F    G TG+++TK+DG+A+GG ++ +     IPV  +G+GEG +DL PF
Sbjct: 582 GQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVVVALQRELGIPVKLVGLGEGPDDLAPF 641

Query: 302 VAKDFS 307
           V  DFS
Sbjct: 642 VPGDFS 647


>gi|227495311|ref|ZP_03925627.1| signal recognition particle receptor [Actinomyces coleocanis DSM
           15436]
 gi|226831181|gb|EEH63564.1| signal recognition particle receptor [Actinomyces coleocanis DSM
           15436]
          Length = 392

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/283 (39%), Positives = 172/283 (60%), Gaps = 15/283 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSE 90
           I+S   L +   EE ED L+ +D+G+   ++I+  L      K+ +    V+ +L   +E
Sbjct: 108 ILSKGDLSEADWEEFEDTLLMADLGLDATEEILGNLRKAVQVKNTTDPAEVKELLR--AE 165

Query: 91  LIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           L+ ++   L +  N   +        P V+L+VGVNG GKTT +GKL++       KV+L
Sbjct: 166 LLKQVNPELDRSLNLSVTETAEGKRHPAVVLMVGVNGTGKTTTVGKLARLFVAEDRKVVL 225

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
            A DTFR+AA +QL  W DR   + V SE  G+D A++A++A K+ Q  + DV+++DTAG
Sbjct: 226 GAADTFRAAAAEQLTTWGDRVGIETVRSEQEGADPASVAFDAVKRGQEVEADVVLVDTAG 285

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RL N S LM  +GK+ RV+++  P +   VL VLDATTGQN LRQ ++F  V   TG+++
Sbjct: 286 RLQNKSTLMDELGKVKRVMEKRGPVS--EVLLVLDATTGQNGLRQAQVFAEVVDVTGVVL 343

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TK+DG+A+GG ++ +     +PV  +G+GEG +DL PF   DF
Sbjct: 344 TKLDGSAKGGVVVSVQRELGVPVKLVGLGEGADDLAPFNPADF 386


>gi|257461472|ref|ZP_05626568.1| signal recognition particle-docking protein FtsY [Campylobacter
           gracilis RM3268]
 gi|257441195|gb|EEV16342.1| signal recognition particle-docking protein FtsY [Campylobacter
           gracilis RM3268]
          Length = 287

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 163/287 (56%), Gaps = 22/287 (7%)

Query: 28  LKEGITDIISSRR---LDDGVREE-LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
            K+G++  I + R    +D + +E LE++L+ +D+G  + ++I+E+L  K+      ++ 
Sbjct: 5   FKKGLSKTIDAMRGAKSEDKISKEILEEMLLEADVGYELVEEILEKLPAKKLVAKDDLKG 64

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           VL +               F+++ +     +P V L++GVNG GKTT   KL+    ++G
Sbjct: 65  VLKNY--------------FDYEIAKAADEKPFVELIIGVNGAGKTTTTAKLANLYKNSG 110

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+ A++QLK WA   +   V +  G D AA+A++    A AK +D ++I
Sbjct: 111 QSVILGACDTFRAGAVEQLKKWAQILNLPIVATAQGHDPAAVAFDTVSSASAKNIDRVLI 170

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL N   L A + K++R+  R    APH  + VLDAT G +++ Q   F+ +    
Sbjct: 171 DTAGRLQNQKNLAAELEKIVRICDRAKSGAPHRKIIVLDATQGNHSVAQARAFNEIVRLD 230

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G+I+TK+DGT +GG L  I    ++P+ F+GVGE + DL  F +  F
Sbjct: 231 GIIITKLDGTPKGGALFAIARELRLPILFVGVGERMEDLAEFNSDQF 277


>gi|308177252|ref|YP_003916658.1| signal recognition particle-docking protein FtsY [Arthrobacter
           arilaitensis Re117]
 gi|307744715|emb|CBT75687.1| signal recognition particle-docking protein FtsY [Arthrobacter
           arilaitensis Re117]
          Length = 393

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/299 (39%), Positives = 180/299 (60%), Gaps = 6/299 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L      ++    +G+  ++S   +D+ V EE+E+ L+ +D+G   A ++V+ L 
Sbjct: 90  SRLARLRARLTKSNNMFSKGLLALLSQDSIDEDVWEEIEENLLMADLGTEPALELVDALR 149

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH--RPHVILVVGVNGVGKTTVI 128
            + +        RV   + E + K++ P          H  RP +I+VVGVNGVGKTT I
Sbjct: 150 ERVKIEGSTDPARVKAMLREELLKLVDPTMDRSYLPAPHPDRPSIIMVVGVNGVGKTTTI 209

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFK 187
           GKL++ +      V+L A DTFR+AA +QL  W DR     V S+I G+D A++A+EA  
Sbjct: 210 GKLARVLVAEDKDVLLGAADTFRAAAAEQLATWGDRVGVPTVRSDIDGADPASVAFEAVS 269

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
               ++VD+++IDTAGRL N   LM  +GK+ RV+++    A   VL VLDATTGQN L+
Sbjct: 270 AGIDQEVDIVMIDTAGRLQNKVGLMDELGKIKRVVEK--KAAIDEVLLVLDATTGQNGLQ 327

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q ++F  V   +G+++TK+DGTA+GG ++ I     +PV  +G+GEG +DL PF A+DF
Sbjct: 328 QAKVFSEVVNVSGIVLTKLDGTAKGGIVVAIQRQLGVPVKLVGLGEGPDDLAPFNAEDF 386


>gi|194476881|ref|YP_002049060.1| signal recognition particle-docking protein FtsY [Paulinella
           chromatophora]
 gi|171191888|gb|ACB42850.1| signal recognition particle-docking protein FtsY [Paulinella
           chromatophora]
          Length = 439

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/326 (35%), Positives = 188/326 (57%), Gaps = 22/326 (6%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +++ +V  + + W+ +L +G   T   L   + +I+    L   V E+LE LL+++D+G+
Sbjct: 121 LNSNQVTLDEIDWLTRLRQGLKKTRQGLVTQLLEILGDDPLTPEVVEDLETLLLQADVGI 180

Query: 61  --------AVAQKIVEELLTKRYA----KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
                    + Q++ EE+L         KD  ++++L D      KML+   +       
Sbjct: 181 DATDQVLTVIRQRMNEEVLDPAEGLLLLKD-QLRKILEDPIIASGKMLLAPDR------- 232

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            R +V L+VGVNGVGKTT IGKL+     +G   ++AA DTFR+AA++Q+K+W +R++  
Sbjct: 233 ERLNVWLLVGVNGVGKTTTIGKLANLAVRSGYTALIAAADTFRAAAVEQVKVWGNRSNVP 292

Query: 169 FVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
            + +  I +D A++ ++A   A+AK  +++++DTAGRL     LM  + K+ R++ RL P
Sbjct: 293 IIANPSINADPASVVFDALNAAKAKGTNLVLVDTAGRLQTKHNLMEELSKVRRIIDRLAP 352

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            A    L VLDAT GQN  RQ   F   A  TG+I+TK+DG++RGG  +      K+P+ 
Sbjct: 353 EANVESLLVLDATQGQNGFRQAIGFAKTAALTGIILTKLDGSSRGGMALAAASEVKLPIR 412

Query: 288 FLGVGEGINDLEPFVAKDF-SAVITG 312
           F+GVGEGI DL PF +  F  A++ G
Sbjct: 413 FIGVGEGIRDLHPFNSFTFVEALLAG 438


>gi|291299634|ref|YP_003510912.1| signal recognition particle-docking protein FtsY [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568854|gb|ADD41819.1| signal recognition particle-docking protein FtsY [Stackebrandtia
           nassauensis DSM 44728]
          Length = 413

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/297 (38%), Positives = 172/297 (57%), Gaps = 11/297 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    + ++  L  G+  ++S  RLDD   EE+E+ L+ +D+G+    +IVE L   R 
Sbjct: 79  RLRARLSKSNNSLGRGLLTLLSRDRLDDDAWEEIEETLLMADVGLESTNRIVERL---RE 135

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFS-----HRPHVILVVGVNGVGKTTVIG 129
              V   R   ++  L+ + L     P F+   +      RP V+LVVGVNG GKTT  G
Sbjct: 136 RVKVLGTRTAEELRGLLSEELTAALDPSFDRALNATGDGERPAVLLVVGVNGAGKTTTCG 195

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+++ +   G  V+L A DTFR+AA DQL+ W  R  +  V    G D A++A++A K  
Sbjct: 196 KIARVLIADGHSVVLGAADTFRAAAADQLETWGKRVGSTVVRGPEGGDPASVAFDAVKTG 255

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  D +++DTAGRL N + LM  +GK+ RV+++  P A    L ++DATTGQN L Q 
Sbjct: 256 TEQGADSVLVDTAGRLQNKTGLMDELGKVKRVIEKQGPVA--ETLLIIDATTGQNGLEQA 313

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            +F  V   TG+++TK+DGTA+GG +I +  T  +PV  +G+GEG +DL PF  + F
Sbjct: 314 RVFTEVCQVTGVVLTKLDGTAKGGIVIAVQQTLGVPVKLIGLGEGPDDLAPFDVQQF 370


>gi|309775369|ref|ZP_07670374.1| signal recognition particle-docking protein FtsY
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916886|gb|EFP62621.1| signal recognition particle-docking protein FtsY
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 270

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/254 (43%), Positives = 154/254 (60%), Gaps = 7/254 (2%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-NWDFSHR 110
           +L+ +DIG+  AQKIV+E+  +   + +   +   ++SE +  ++  L   + + DF   
Sbjct: 3   VLLEADIGIKTAQKIVDEVENRAMDEKL---KSFDEISECLIAVMHELYTSYEDADFHKN 59

Query: 111 ---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
              P VIL+VGVNG GKTT   KL+K   + G  V+LAA DTFR+ AIDQL  WADR   
Sbjct: 60  EDGPTVILMVGVNGSGKTTTTAKLTKLFQNEGSSVVLAAADTFRAGAIDQLAKWADRLGV 119

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +    G D +A   +A + A+   +D LI DTAGRL N + LM  + KM RV++R  P
Sbjct: 120 ACIKGREGGDPSAALVDACRYAKDNGMDYLIGDTAGRLQNKANLMQELSKMRRVIEREIP 179

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            APH V  VLDATTGQN + Q ++F      TG+I+TKMDGTA+GG +I I     +PV 
Sbjct: 180 GAPHEVWLVLDATTGQNGISQAQIFLETTKVTGIILTKMDGTAKGGIVIAIRDLLGLPVK 239

Query: 288 FLGVGEGINDLEPF 301
           ++G+GE  +DL PF
Sbjct: 240 YIGLGEKEDDLRPF 253


>gi|119717494|ref|YP_924459.1| signal recognition particle-docking protein FtsY [Nocardioides sp.
           JS614]
 gi|119538155|gb|ABL82772.1| signal recognition particle-docking protein FtsY [Nocardioides sp.
           JS614]
          Length = 376

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/286 (40%), Positives = 168/286 (58%), Gaps = 21/286 (7%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
           S  RLD+   E +ED L+ +D+GV   Q++VE L T+     + V+    D   ++ + L
Sbjct: 102 SRDRLDEDTWESIEDTLLTADVGVGPTQELVERLRTR-----LRVEGAPEDARGVLREEL 156

Query: 97  MPLSKPFNWDFSHRPHV---------ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + L  P   D   R HV         +LVVGVNG GKTT +GK+S+ +      V+L A 
Sbjct: 157 LALVDP---DMDRRLHVSGLDGMPGVVLVVGVNGSGKTTTVGKISRILVAEDRSVVLGAA 213

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QL  W +R   D V    G+D A++A+EA K+    K D +I+DTAGRL N
Sbjct: 214 DTFRAAAVEQLATWGERVGVDVVRGPEGTDPASVAFEAVKEGVETKADTVIVDTAGRLQN 273

Query: 208 NSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            + LM  +GK+ RV+++    AP   VL VLDATTGQN L Q  +F  V   TG+++TK+
Sbjct: 274 KAGLMDELGKVKRVIEK---QAPVTEVLLVLDATTGQNGLIQARVFSEVVNVTGIVLTKL 330

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           DG+A+GG ++ +     +PV  +G+GEG +DL PF A  F   + G
Sbjct: 331 DGSAKGGIVVQVQRELGVPVKLVGLGEGADDLAPFDAGAFVDALLG 376


>gi|227543205|ref|ZP_03973254.1| signal recognition particle GTPase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181014|gb|EEI61986.1| signal recognition particle GTPase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 692

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/285 (38%), Positives = 169/285 (59%), Gaps = 11/285 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + +G+  I+S+  LD+   EE+ED LI +D+G +   K+V+ L  K  A+ V  +    +
Sbjct: 407 IGQGVLGILSAGDLDEDAWEEIEDTLIMADLGASTTMKVVDSLREKIAARGVHNEE---E 463

Query: 88  VSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
              ++ + L+   +P          + ++P V+LVVGVNG GKTT +GKL + +   G  
Sbjct: 464 ARAMLRETLIEAGRPELDRSIKAMPYDNKPAVVLVVGVNGTGKTTTVGKLGRVLVSMGHS 523

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           VM  A DTFR+AA DQL+ W  R  A  V  + G+D A++A++A  +   + VDV+++DT
Sbjct: 524 VMFGAADTFRAAAADQLEAWGRRVGASTVRGKEGADPASVAFDAVAKGTEQGVDVVLVDT 583

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH ++ LM  +GK+ RV+++        VL VLDAT GQN + Q   F  V   TG+
Sbjct: 584 AGRLHTSTGLMDQLGKVKRVVEKK--AKVDEVLLVLDATVGQNGIIQARTFRDVVDITGV 641

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F
Sbjct: 642 VLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESF 686


>gi|48478588|ref|YP_024294.1| signal recognition particle receptor FtsY [Picrophilus torridus DSM
           9790]
 gi|48431236|gb|AAT44101.1| signal recognition particle receptor FtsY [Picrophilus torridus DSM
           9790]
          Length = 315

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/262 (34%), Positives = 160/262 (61%), Gaps = 9/262 (3%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           D   E ++++LI SD+    A++IVE L    K+ ++ +S   +  ++  +++ +L    
Sbjct: 48  DEFDERVQEILIESDVSFESAERIVEMLKNREKKLSRKISYDDIKSNLRSVLYDVLSQAK 107

Query: 101 KPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
              +  +   +P+VIL +G+NG GKTT IGK++  + +   KV++AAGDTFR+ AI+Q+ 
Sbjct: 108 SDLDLLNVDKKPYVILFIGINGTGKTTTIGKIASYLKNNNKKVVIAAGDTFRAGAIEQIS 167

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I  ++T  + +  + GSD A++AY+A + A+A+++D ++ID+AGR+  N  L++ + K+ 
Sbjct: 168 IIGEKTGTEVIKHDFGSDPASVAYDAIEHARARRIDYVLIDSAGRMQTNKNLLSEMKKIK 227

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV +      P   L VLD   G +A+ Q + F       G+++TK+D  ARGG +I + 
Sbjct: 228 RVAR------PDLTLLVLDGMIGNDAIEQAKTFMNEINFDGVVLTKLDTDARGGAVISVA 281

Query: 280 VTHKIPVYFLGVGEGINDLEPF 301
           +  K P+ F+GVG+G+ND+  F
Sbjct: 282 MEIKKPIMFVGVGQGLNDIMRF 303


>gi|308235260|ref|ZP_07665997.1| FtsY signal recognition particle [Gardnerella vaginalis ATCC 14018]
          Length = 369

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 183/312 (58%), Gaps = 16/312 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L    A+++      + +I+S   L +   +++ED L+ +D+G   + ++VE L 
Sbjct: 66  SRVTRLRSKLANSANPFGRALFNILSKDNLSEEDWQDVEDTLLMADVGAQASDELVESL- 124

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFS--HRPHVILVVGVNGVGK 124
             R    +S      DV E++   L+ +      +  N D S  H+P VI++VGVNG GK
Sbjct: 125 --RKDARISGTASAQDVREILRAKLLDIVGAKTDRSLNADSSKAHKPSVIMMVGVNGTGK 182

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183
           TT  GKL++ M      V+LAA DTFR+AA DQL+ WA+      V SE  G+D A++A+
Sbjct: 183 TTTAGKLARLMVSKNRSVILAAADTFRAAAADQLETWANAVGVKIVRSEKDGADPASVAF 242

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +   +A+    DVLI+DTAGRL N + LM  +GK+ RV+++  P     VL VLDATTGQ
Sbjct: 243 DGAAKAKESNSDVLIVDTAGRLQNKANLMDELGKIRRVIEKTVPV--DEVLLVLDATTGQ 300

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N + Q ++F    G TG+++TK+DG+A+GG ++ +     +PV  +G+GEG +DL PF  
Sbjct: 301 NGMVQAKVFAEAIGITGVVLTKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFDP 360

Query: 304 KDFSAVITGCLD 315
           + F   + G LD
Sbjct: 361 ESF---VDGILD 369


>gi|311113983|ref|YP_003985204.1| cell division protein FtsY [Gardnerella vaginalis ATCC 14019]
 gi|310945477|gb|ADP38181.1| cell division protein FtsY [Gardnerella vaginalis ATCC 14019]
          Length = 373

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 183/312 (58%), Gaps = 16/312 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L    A+++      + +I+S   L +   +++ED L+ +D+G   + ++VE L 
Sbjct: 70  SRVTRLRSKLANSANPFGRALFNILSKDNLSEEDWQDVEDTLLMADVGAQASDELVESL- 128

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFS--HRPHVILVVGVNGVGK 124
             R    +S      DV E++   L+ +      +  N D S  H+P VI++VGVNG GK
Sbjct: 129 --RKDARISGTASAQDVREILRAKLLDIVGAKTDRSLNADSSKAHKPSVIMMVGVNGTGK 186

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183
           TT  GKL++ M      V+LAA DTFR+AA DQL+ WA+      V SE  G+D A++A+
Sbjct: 187 TTTAGKLARLMVSKNRSVILAAADTFRAAAADQLETWANAVGVKIVRSEKDGADPASVAF 246

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +   +A+    DVLI+DTAGRL N + LM  +GK+ RV+++  P     VL VLDATTGQ
Sbjct: 247 DGAAKAKESNSDVLIVDTAGRLQNKANLMDELGKIRRVIEKTVPV--DEVLLVLDATTGQ 304

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N + Q ++F    G TG+++TK+DG+A+GG ++ +     +PV  +G+GEG +DL PF  
Sbjct: 305 NGMVQAKVFAEAIGITGVVLTKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFDP 364

Query: 304 KDFSAVITGCLD 315
           + F   + G LD
Sbjct: 365 ESF---VDGILD 373


>gi|227488601|ref|ZP_03918917.1| signal recognition particle GTPase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091495|gb|EEI26807.1| signal recognition particle GTPase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 692

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/285 (38%), Positives = 169/285 (59%), Gaps = 11/285 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + +G+  I+S+  LD+   EE+ED LI +D+G +   K+V+ L  K  A+ V  +    +
Sbjct: 407 IGQGVLGILSAGDLDEDAWEEIEDTLIMADLGASTTMKVVDSLREKIAARGVHNEE---E 463

Query: 88  VSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
              ++ + L+   +P          + ++P V+LVVGVNG GKTT +GKL + +   G  
Sbjct: 464 ARAMLRETLIEAGRPELDRSIKAMPYDNKPAVVLVVGVNGTGKTTTVGKLGRVLVSMGHS 523

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           VM  A DTFR+AA DQL+ W  R  A  V  + G+D A++A++A  +   + VDV+++DT
Sbjct: 524 VMFGAADTFRAAAADQLEAWGRRVGASTVRGKEGADPASVAFDAVAKGTEQGVDVVLVDT 583

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH ++ LM  +GK+ RV+++        VL VLDAT GQN + Q   F  V   TG+
Sbjct: 584 AGRLHTSTGLMDQLGKVKRVVEKK--AKVDEVLLVLDATVGQNGIIQARTFRDVVDITGV 641

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F
Sbjct: 642 VLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESF 686


>gi|62185365|ref|YP_220150.1| putative cell division protein [Chlamydophila abortus S26/3]
 gi|62148432|emb|CAH64200.1| putative cell division protein [Chlamydophila abortus S26/3]
          Length = 286

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/265 (36%), Positives = 150/265 (56%), Gaps = 8/265 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-- 96
           + L   + E  E L   +D G  + +++   L   R     +V+ +   VS L+ + L  
Sbjct: 15  KTLSPDLLEFTESLFYEADFGSDLTEELCSRLRKCRKPDASTVKDL---VSSLLRETLDS 71

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           +PL++P        P V L++G NG GKTT + KL+        KVM+ A DTFRSA ++
Sbjct: 72  LPLAEPCQ---GPAPIVSLILGSNGSGKTTTVAKLAHYYLSRSEKVMIVATDTFRSAGMN 128

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           Q++ WA++    FV  + G D AA+AY+    A ++  D ++IDT+GRLH ++ L+  + 
Sbjct: 129 QMRCWAEKLGCGFVSGKPGGDPAAIAYDGIASAMSRGYDRVLIDTSGRLHTHTNLLNELS 188

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K++ V  ++ P +PH  L  +DAT G N + QV +FH     +GLI+TK+DG+A+GG L 
Sbjct: 189 KIVSVCNKVHPGSPHERLMTIDATLGGNVIEQVRVFHDTVPLSGLILTKVDGSAKGGTLF 248

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            +    KIP  F+G GE I DLE F
Sbjct: 249 RVAKQLKIPTKFVGYGELIGDLEEF 273


>gi|283769401|ref|ZP_06342300.1| signal recognition particle-docking protein FtsY [Bulleidia
           extructa W1219]
 gi|283104058|gb|EFC05442.1| signal recognition particle-docking protein FtsY [Bulleidia
           extructa W1219]
          Length = 323

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 104/279 (37%), Positives = 156/279 (55%), Gaps = 3/279 (1%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLM 97
           + +DD   E+L  +L+ +D+G+  A  I E+L  K +    ++ Q  +  + E + ++  
Sbjct: 43  KGVDDAFLEQLTIILLEADVGIHTADYICEQLKMKCKEYPSITFQWAMNFLIETMQEVYE 102

Query: 98  PLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            ++  P  ++ S+ P V L+ GVNG GKTT   KL       G KV   A DTFR+ AI+
Sbjct: 103 KVADTPIQFN-SNGPTVFLLEGVNGSGKTTTTAKLGYSFLKQGKKVAFTAADTFRAGAIE 161

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK W +R     +  +   D +A   +  + A+  +VD+L+ DTAGRL N   LMA + 
Sbjct: 162 QLKEWGNRLGIPVIAGKENGDPSAAIVDGCRYAKENQVDILLCDTAGRLQNKVNLMAELS 221

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           KM +V  R    APH+   VLDATTGQN L Q ++F      +G+I+TKMDGTA+GG ++
Sbjct: 222 KMNKVAGREISGAPHNTWLVLDATTGQNGLSQAKIFAESTQLSGIILTKMDGTAKGGIVL 281

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I     IPV +LG+GE   DL PF  + +   I+  L+
Sbjct: 282 AIKHQLHIPVLYLGLGEKQEDLRPFDLQSYLYSISKGLE 320


>gi|225351302|ref|ZP_03742325.1| hypothetical protein BIFPSEUDO_02894 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158758|gb|EEG72000.1| hypothetical protein BIFPSEUDO_02894 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 420

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/281 (40%), Positives = 175/281 (62%), Gaps = 13/281 (4%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93
           +I++  +L +   E++ED L+ +D+G   ++++VEEL   R    +S Q    +V   + 
Sbjct: 139 NILAKDQLSEADWEDVEDTLLLADVGAEASEQLVEEL---RNDARISGQSDPAEVRAALK 195

Query: 94  KMLMPL-----SKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             L+ L      +  N D   +++P+VI++VGVNG GKTT  GKLS+ +   G +VML A
Sbjct: 196 DKLLKLVGTDTDRRLNADKEGANKPNVIIMVGVNGTGKTTTAGKLSRLLVSEGKQVMLGA 255

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
            DTFR+AA DQL+ W  +     V S+  G+D A++A+EA  +A+ + VDVLIIDTAGRL
Sbjct: 256 ADTFRAAAADQLETWGAKVGVPVVRSDKDGADPASVAFEASAKAKEENVDVLIIDTAGRL 315

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N + LM  +GK+ RV ++  P     VL VLDATTGQN + Q ++F    G TG++++K
Sbjct: 316 QNKANLMDELGKIRRVTEKNLPV--DEVLLVLDATTGQNGMTQAKVFAEAIGITGVVLSK 373

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +DG+A+GG +I +     +PV  +G+GEG +DL PF  + F
Sbjct: 374 LDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFDPEGF 414


>gi|284929430|ref|YP_003421952.1| signal recognition particle-docking protein FtsY [cyanobacterium
           UCYN-A]
 gi|284809874|gb|ADB95571.1| signal recognition particle-docking protein FtsY [cyanobacterium
           UCYN-A]
          Length = 435

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 180/309 (58%), Gaps = 6/309 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + +  + + W++ L KG + T   L   +  ++    L +    E+E +L+++DIG+   
Sbjct: 120 EDITEDEIQWLKSLHKGLSKTRRGLLNQLKLVLGQGPLSENAILEIETILLQADIGINAT 179

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVI---LVVGV 119
             IV  L  K   + +  ++ +  +  ++  +L  PL + ++ +   +  V+   L+ GV
Sbjct: 180 DYIVTTLQNKLLEESLPSEKAIEYLKTILCDILNSPLKQAYDSEILVKKEVLNIWLLTGV 239

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDA 178
           NG GKTT IGKL+      G   ++AA DTFR+AA++Q+KIW ++T+   +  S   +D 
Sbjct: 240 NGAGKTTTIGKLAYLAQQCGHSCIIAAADTFRAAAVEQVKIWGEKTNTPIISNSGKNTDP 299

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH-SVLQVL 237
           AA+ Y+    AQA+ VD+L++DTAGRL N + LM  + K+ RV+ +   +  H   L V+
Sbjct: 300 AAVVYDGLMAAQARNVDLLLVDTAGRLQNKTNLMEELAKIRRVIDKKAKNNVHIESLLVI 359

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DAT GQN LRQ E+F   A  TG+I+TK+DG+++GG  + I     +P+ F+GVGE + D
Sbjct: 360 DATLGQNGLRQTELFSEAAHLTGVILTKLDGSSKGGIALAITQQFGLPIRFIGVGENMKD 419

Query: 298 LEPFVAKDF 306
           L+PF + +F
Sbjct: 420 LKPFSSHEF 428


>gi|84498332|ref|ZP_00997129.1| putative prokaryotic docking protein [Janibacter sp. HTCC2649]
 gi|84381832|gb|EAP97715.1| putative prokaryotic docking protein [Janibacter sp. HTCC2649]
          Length = 405

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 117/272 (43%), Positives = 170/272 (62%), Gaps = 10/272 (3%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDVSELIHKML 96
           LD+   E++ED L+ +D+GV    ++V+ L TK      A + +V+  L +  ELI  + 
Sbjct: 132 LDEQAWEDVEDTLLTADLGVEATTELVDALRTKVRVHGTADEATVRGWLRE--ELIALVD 189

Query: 97  MPLSKPF-NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
             + +   +     RP VI+VVGVNG GKTT +GKL++ +      V+L A DTFR+AA 
Sbjct: 190 PSMDRSIASSRVDGRPAVIVVVGVNGTGKTTTVGKLARVLVAEDKDVVLGAADTFRAAAA 249

Query: 156 DQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           DQL+ W +R     + S+  G+D AA+A++A K A   + DV+IIDTAGRLHN   LM  
Sbjct: 250 DQLQTWGERVGVPTIRSDRDGADPAAVAFDAVKGAAELESDVVIIDTAGRLHNKVGLMDE 309

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           +GK+ RV+++  P     VL VLDATTGQN LRQ E+F  V G TG+++TK+DGTA+GG 
Sbjct: 310 LGKVKRVIEKQSPI--DEVLLVLDATTGQNGLRQAEVFSEVVGITGIVLTKLDGTAKGGI 367

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++ +     +PV  +G+GEG +DL PF  + F
Sbjct: 368 VVAVQRKLGVPVKLIGLGEGPDDLAPFDPEGF 399


>gi|325067019|ref|ZP_08125692.1| signal recognition particle-docking protein FtsY [Actinomyces oris
           K20]
          Length = 317

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/277 (39%), Positives = 169/277 (61%), Gaps = 13/277 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFN 104
           EE+ED L+ SD+G+ V   +++EL T+      S    +  V  +EL+  +   L +  N
Sbjct: 43  EEIEDTLLTSDLGIEVTTSLMDELRTQAKVLGTSDPEAVRTVLRAELLKLVDPSLDRSLN 102

Query: 105 WD-------FSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            +          +P   IL+VGVNG GKTT  GKL++ +      V+L A DTFR+AA +
Sbjct: 103 LERPTPAEGAQGKPAAAILMVGVNGTGKTTTCGKLARVLVAQDKTVVLGAADTFRAAAAE 162

Query: 157 QLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           QL  W +R   D V SE  G+D A++AY+A ++A A++ DV+++DTAGRL N + LM  +
Sbjct: 163 QLSTWGERVGVDVVRSEKEGADPASVAYDAAREASAQEADVVVVDTAGRLQNKAGLMDEL 222

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
           GK+ RV++++ P     +L VLDATTGQN +RQ ++F    G TG+++TK+DGTA+GG +
Sbjct: 223 GKIKRVMEKIAPVG--EILLVLDATTGQNGMRQAQVFSEAVGVTGIVLTKLDGTAKGGIV 280

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           + +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 281 VTVQKELGVPVKLVGLGEGADDLAPFDPEGFVDALLG 317


>gi|315104270|gb|EFT76246.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL050PA2]
          Length = 396

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 115/293 (39%), Positives = 177/293 (60%), Gaps = 14/293 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S       
Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGRTTELVEKLRSELAIDGISDS---AH 161

Query: 88  VSELIHKMLMPLSKP-----FNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
             E++H  L+ L  P      N D    +P V+L+VGVNG GKTT  GKL++ +   G  
Sbjct: 162 AREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKT 221

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +      VDV+++DT
Sbjct: 222 VLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLVDT 281

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH  + LM  +GK+ RV+++  P +   VL VLDATTGQN L Q  +F  V   TG+
Sbjct: 282 AGRLHTKAGLMDELGKVKRVIEKFAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVTGI 339

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           +++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   +TG +
Sbjct: 340 VLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNF---VTGLM 389


>gi|282899368|ref|ZP_06307336.1| Cell division transporter substrate-binding protein FtsY
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195735|gb|EFA70664.1| Cell division transporter substrate-binding protein FtsY
           [Cylindrospermopsis raciborskii CS-505]
          Length = 497

 Score =  175 bits (444), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 179/308 (58%), Gaps = 5/308 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + ++ E ++W++KL +G   T   +   +  I+    L+     E+E +L+++D+GV   
Sbjct: 184 EDISIEEITWLKKLRQGLDKTRRNILNQLKAIVGQGPLNQDAVAEIEGILLQADVGVEAT 243

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPH---VILVVGV 119
             I++ L  K   +  + ++ +  + +++  ML  PL       F+       + L+ GV
Sbjct: 244 DLIIQSLQKKLRDEVTAPEQAIAYLKQILRDMLEKPLESSPRSGFAPEKDKLTIWLITGV 303

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGK++     +G   ++AA DTFR+AA++Q+K+W  R+  + + +    +D 
Sbjct: 304 NGAGKTTTIGKIAHLAQKSGYNCLIAAADTFRAAAVEQVKVWGSRSGVEVIANPGKNTDP 363

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQ++K ++L++DTAGRL N   LM  + K+ R++ +    A    L VLD
Sbjct: 364 AAIVFDAIAAAQSRKTELLLVDTAGRLQNKKNLMDELSKIRRIIDKKAADARVESLLVLD 423

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +T GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G GEGI DL
Sbjct: 424 STLGQNGLRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 483

Query: 299 EPFVAKDF 306
            PF + +F
Sbjct: 484 RPFSSYEF 491


>gi|256824941|ref|YP_003148901.1| signal recognition particle-docking protein FtsY [Kytococcus
           sedentarius DSM 20547]
 gi|256688334|gb|ACV06136.1| signal recognition particle-docking protein FtsY [Kytococcus
           sedentarius DSM 20547]
          Length = 480

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/276 (39%), Positives = 171/276 (61%), Gaps = 6/276 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELI 92
           +++S  LD+   EE+ED L+ SD+GV    ++V+ L  +   ++ +   ++  +   EL+
Sbjct: 201 LLTSGDLDEAAWEEVEDTLLASDLGVEATTELVDNLRKRVQVENTTDPELVRGWLREELV 260

Query: 93  HKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             +   + +       + RP V+LVVGVNG GKTT +GK+++ +      V+L A DTFR
Sbjct: 261 RLVDPTMERGIAATRQNGRPSVVLVVGVNGTGKTTTVGKIARVLVAEDKDVVLGAADTFR 320

Query: 152 SAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           +AA DQL+ W +R     V SE  G+D A++A++A ++    + DV+++DTAGRLHN + 
Sbjct: 321 AAAADQLQTWGERVGVRTVRSEKEGADPASVAFDAVREGLESEADVVLLDTAGRLHNKAG 380

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + K+ RV+++        VL VLDATTGQN ++Q E+F      TG+++TKMDGTA
Sbjct: 381 LMDELAKVKRVVEKR--SQIDEVLLVLDATTGQNGMKQAEVFSQAVDVTGIVLTKMDGTA 438

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           RGG ++ +     +PV  +G+GEG +DL PFVA DF
Sbjct: 439 RGGIVVAVQRALGVPVKLVGLGEGADDLAPFVATDF 474


>gi|89898035|ref|YP_515145.1| cell division related signal recognition particle GTPase
           [Chlamydophila felis Fe/C-56]
 gi|89331407|dbj|BAE81000.1| cell division related signal recognition particle GTPase
           [Chlamydophila felis Fe/C-56]
          Length = 285

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 97/255 (38%), Positives = 144/255 (56%), Gaps = 5/255 (1%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E  E L   +D G  + +++   L   R   + +V+ +   VS L+ + L  L  P    
Sbjct: 23  EFTESLFYEADFGSELTEELCSRLRKCRKPDESTVKDL---VSSLLRETLANL--PIIKS 77

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               P V L++G NG GKTT + KL+        KVM+ A DTFRSA +DQ++ WA++  
Sbjct: 78  EKDTPVVSLMLGTNGSGKTTTVAKLAHYYLSRSEKVMIVATDTFRSAGMDQMRCWAEKLG 137

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             FV  + G D AA+AY+    A+++  D +IIDT+GRLH ++ L+  + K++ V  ++ 
Sbjct: 138 CGFVSGKPGGDPAAIAYDGIASAKSRGYDRVIIDTSGRLHTHTNLLNELSKIVSVCNKVH 197

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             +PH  L  +DAT G N + QV +FH     +GLI+TK+DG+A+GG L  I    KIP 
Sbjct: 198 AGSPHERLMTIDATLGGNVIEQVRVFHETIPLSGLILTKVDGSAKGGTLFRIAKQLKIPT 257

Query: 287 YFLGVGEGINDLEPF 301
            F+G GE I DLE F
Sbjct: 258 KFVGYGELIGDLEEF 272


>gi|57242523|ref|ZP_00370461.1| signal recognition particle-docking protein FtsY [Campylobacter
           upsaliensis RM3195]
 gi|57016808|gb|EAL53591.1| signal recognition particle-docking protein FtsY [Campylobacter
           upsaliensis RM3195]
          Length = 288

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 100/288 (34%), Positives = 164/288 (56%), Gaps = 17/288 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           F  T  K  E IT   ++ ++    ++ LE++L+ +D+   + ++I+  L      K   
Sbjct: 5   FKKTLAKTLENITKTKANHKIS---KDLLEEILLEADVAYEIVEEIIYYLPPTDEVKKAD 61

Query: 81  VQRVL--YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           ++RV+  Y + E       P S       + +P V L++GVNG GKTT I KL+      
Sbjct: 62  LKRVMGAYFLYE------NPESS------TQKPFVELILGVNGAGKTTSIAKLANLYKKQ 109

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G KV+L A DTFR+ AI+QL++WA++     V S  G D +A+A++   +A+AK  D +I
Sbjct: 110 GQKVILGACDTFRAGAIEQLRLWAEKIGVQIVLSNQGHDPSAVAFDTISKAKAKDFDRVI 169

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL N   L   + K++R+ ++   +APH  + VLD T G   + Q + F+ +   
Sbjct: 170 LDTAGRLQNQKNLANELEKIVRICEKAMTNAPHRKILVLDGTQGNAGILQAKAFNELIKL 229

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            G+I+TK+DGTA+GG L  I    ++P++++GVGE ++DL  F A  +
Sbjct: 230 DGVIITKLDGTAKGGALFSIARELEMPIFYVGVGEKMDDLYEFDANAY 277


>gi|152990801|ref|YP_001356523.1| signal recognition particle receptor FtsY [Nitratiruptor sp.
           SB155-2]
 gi|151422662|dbj|BAF70166.1| signal recognition particle receptor FtsY [Nitratiruptor sp.
           SB155-2]
          Length = 286

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 127/197 (64%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P V L++GVNG GKTT I KL+ +    G  V+L A DTFR+AAI+QL  WAD+     
Sbjct: 80  KPFVELILGVNGAGKTTTIAKLAYRYKREGKSVILGAADTFRAAAIEQLTKWADKLDVPI 139

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V ++ G D +A+AY+  ++A++K +D ++IDTAGRLH  S L   + K++R+  +    A
Sbjct: 140 VATKQGHDPSAVAYDTIQKAKSKGIDHVLIDTAGRLHTQSNLAEELKKIVRICGKAMEGA 199

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH  L +LD T G +A+ Q + FH + G  G+I+TK+DGTA+GG L+ I     +P+ ++
Sbjct: 200 PHRKLLILDGTQGNSAIHQAKAFHEMVGVDGIIVTKLDGTAKGGALLSISHEMGLPILYV 259

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE + DL PF   ++
Sbjct: 260 GTGEKMEDLAPFDPNEY 276


>gi|322379443|ref|ZP_08053813.1| Signal recognition particle receptor [Helicobacter suis HS1]
 gi|322380946|ref|ZP_08055012.1| cell division protein FtsY [Helicobacter suis HS5]
 gi|321146618|gb|EFX41452.1| cell division protein FtsY [Helicobacter suis HS5]
 gi|321148152|gb|EFX42682.1| Signal recognition particle receptor [Helicobacter suis HS1]
          Length = 293

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 98/263 (37%), Positives = 157/263 (59%), Gaps = 10/263 (3%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           +E +E++LI  D+   + +K++E L    KR   +V++ R L   S      L P+    
Sbjct: 26  KESIEEILIGFDVQYDLVEKLLEHLPEQIKRNHLEVALMRFLRKESYYDKVSLKPIE--- 82

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
                 +P V L++GVNG GKTT I KL+KK    G KV+L AGDTFR+AA+ QL++W +
Sbjct: 83  -----SKPLVSLILGVNGAGKTTTIAKLAKKYLLNGQKVILGAGDTFRAAAVKQLQLWGE 137

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +   + + +   SD +ALAY   +   A+ +D +IIDTAGRLHN + L   + K+ +V  
Sbjct: 138 KLQLEVISAGQNSDPSALAYNTIEAGTARGMDQIIIDTAGRLHNQTNLKNELLKISKVCS 197

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           +    AP+  + +LD T G +AL Q ++FH      G+I+TK+DGT++GG ++ I+   +
Sbjct: 198 KALKGAPYYKILILDGTQGSSALEQAKIFHESLELDGVIVTKLDGTSKGGCILSILYELQ 257

Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306
           +P+ +LGVGE  +DL  F  +++
Sbjct: 258 LPILYLGVGEKEDDLIVFEEREY 280


>gi|320528387|ref|ZP_08029549.1| signal recognition particle-docking protein FtsY [Solobacterium
           moorei F0204]
 gi|320131301|gb|EFW23869.1| signal recognition particle-docking protein FtsY [Solobacterium
           moorei F0204]
          Length = 323

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 104/276 (37%), Positives = 151/276 (54%), Gaps = 25/276 (9%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---------LTKRYAKD--VSVQRVLYD 87
           + +DD   E+L  +L+ SD+G+  A  I E++         +T ++A +  +   + +Y+
Sbjct: 43  KGVDDDFLEQLTIILLESDVGIETADYICEQMKLKCSEYPSITFKWAMNFLLETMKEIYE 102

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
            +           KP +++  +   V L+ GVNG GKTT   KL++   D G  V   A 
Sbjct: 103 ATP---------DKPISFN-ENGTTVFLLEGVNGSGKTTTSAKLARMFLDQGKSVAFTAA 152

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+ AIDQL  W +R     +      D +A   +  + A    +D+L+ DTAGRL N
Sbjct: 153 DTFRAGAIDQLAKWGERLGVPCIKGIENGDPSAAIVDGCRYAIENNIDILLCDTAGRLQN 212

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + KM RV  +  P APH+   VLDATTGQN L Q ++F      +G+I+TKMD
Sbjct: 213 KANLMNELSKMNRVAAKEIPGAPHNTWLVLDATTGQNGLSQAQIFAEATNLSGIILTKMD 272

Query: 268 GTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPF 301
           GTA+GG  I I + HK  IPVY+LG+GE   DL PF
Sbjct: 273 GTAKGG--IVIAIKHKLHIPVYYLGLGEQPKDLRPF 306


>gi|212715269|ref|ZP_03323397.1| hypothetical protein BIFCAT_00161 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661950|gb|EEB22525.1| hypothetical protein BIFCAT_00161 [Bifidobacterium catenulatum DSM
           16992]
          Length = 420

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/281 (40%), Positives = 174/281 (61%), Gaps = 13/281 (4%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93
           +I++  +L +   E++ED L+ +D+G   ++++VEEL   R    ++ Q    +V   + 
Sbjct: 139 NILAKDQLSEADWEDVEDTLLLADVGAEASEQLVEEL---RNDARIAGQSDPAEVRAALK 195

Query: 94  KMLMPL-----SKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             L+ L      +  N D   +++P VI++VGVNG GKTT  GKLS+ +   G +VML A
Sbjct: 196 DKLLKLVGTDTDRRLNADKEGANKPSVIIMVGVNGTGKTTTAGKLSRLLVSEGKQVMLGA 255

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
            DTFR+AA DQL+ W  +     V S+  G+D A++A+EA  +A+ + VDVLIIDTAGRL
Sbjct: 256 ADTFRAAAADQLETWGAKVGVPVVRSDKDGADPASVAFEASAKAKEENVDVLIIDTAGRL 315

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N + LM  +GK+ RV ++  P     VL VLDATTGQN + Q ++F    G TG++++K
Sbjct: 316 QNKANLMDELGKIRRVTEKNLPV--DEVLLVLDATTGQNGMTQAKVFAEAIGITGVVLSK 373

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +DG+A+GG +I +     +PV  +G+GEG +DL PF  + F
Sbjct: 374 LDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFDPEGF 414


>gi|282891426|ref|ZP_06299925.1| cell division protein FtsY [Parachlamydia acanthamoebae str. Hall's
           coccus]
 gi|281498711|gb|EFB41031.1| cell division protein FtsY [Parachlamydia acanthamoebae str. Hall's
           coccus]
          Length = 309

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/275 (39%), Positives = 169/275 (61%), Gaps = 8/275 (2%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEEL--LTKRYAK---DVSVQRVLYDVSELIHKM 95
           +DD    +LE LL  +D+GV  A ++ E++  L+++ +    D  +  V  ++ +++++ 
Sbjct: 36  IDDETWGKLEQLLYEADLGVQTAIELTEKVKKLSQQNSSLKGDELLSSVRTEILQVLNQH 95

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
             PL +      S  P VIL+VGVNG GKTT   KL+K     G KV++AA DTFR+AA+
Sbjct: 96  ASPLRE---ISSSSEPLVILIVGVNGNGKTTSTAKLAKFFQSQGKKVLVAAADTFRAAAV 152

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL +WA +   D V     SD AA+ ++A   A+A++ +V+I+DTAGRL     LM  +
Sbjct: 153 EQLDVWAQKLGIDIVKGAPKSDPAAVVFDALSAAKARQAEVVIVDTAGRLQTKIDLMQEL 212

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K+ R  K+ +P +P   L VLDATTGQN + Q ++F+     TGLI+TK+DGT++GG +
Sbjct: 213 EKIKRSCKKFNPESPQETLLVLDATTGQNGIDQAKVFNRYTPITGLILTKLDGTSKGGIV 272

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           + I     IPV  +G+GEGI+DLE F  + F+  +
Sbjct: 273 VNIHKQLGIPVKLIGIGEGIDDLELFDPEKFTNAL 307


>gi|159036831|ref|YP_001536084.1| signal recognition particle-docking protein FtsY [Salinispora
           arenicola CNS-205]
 gi|157915666|gb|ABV97093.1| signal recognition particle-docking protein FtsY [Salinispora
           arenicola CNS-205]
          Length = 395

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/295 (39%), Positives = 172/295 (58%), Gaps = 9/295 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY---AKDVSVQRVLY 86
           +G+  ++S  RLD+   EE+ED LI +D+G+   ++IV+ L  +      + V+  R L 
Sbjct: 104 KGLLGLLSRDRLDEDTWEEIEDSLITADVGIDSTREIVDRLRERTRVLGTRTVTELRALL 163

Query: 87  DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
             +EL++ +   L +  N       P V+LVVGVNG GKTT  GK+++ +   G  V+L 
Sbjct: 164 -ATELVNALDPELDRALNTAPKDGVPAVLLVVGVNGAGKTTTCGKVARVLVADGRSVILG 222

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR+AA DQL+ WA R  A+ V    G+D A++A++A K+     VD ++IDTAGRL
Sbjct: 223 AADTFRAAAADQLETWAGRVGAETVRGPEGADPASVAFDAVKRGIETGVDTVLIDTAGRL 282

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
            N   LM  +GK+ RV+++   H P    L +LDATTGQN L Q  +F      TG+ +T
Sbjct: 283 QNKVGLMDELGKVKRVVEK---HGPIDETLLILDATTGQNGLEQARVFTEAVDVTGVALT 339

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319
           K+DGTA+GG +I +     IPV  +G+GEG +DL PF    F   + G    G +
Sbjct: 340 KLDGTAKGGIVIAVQRKLGIPVKLVGLGEGKDDLAPFDPAQFVDALLGAEATGPD 394


>gi|148238347|ref|YP_001223734.1| Signal recognition particle GTPase, FtsY [Synechococcus sp. WH
           7803]
 gi|147846886|emb|CAK22437.1| Signal recognition particle GTPase, FtsY [Synechococcus sp. WH
           7803]
          Length = 488

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 174/308 (56%), Gaps = 5/308 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++V  E + W+ +L +G   T      G+ + +    L   V ++LE LL+R+D GV   
Sbjct: 173 EQVTLEEIDWLGRLRQGLEKTRQGFVSGLLENLGDDPLTPEVLDDLESLLLRADAGVKAT 232

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGV 119
            ++++ L  +   + V     +  + E +  +L    K    D       + +V L+VGV
Sbjct: 233 DQVLDALRKRMNEQVVDPSEGIRFLKEQLRDLLEAPIKSSGVDLLAPQRGQLNVWLMVGV 292

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDA 178
           NGVGKTT +GKL+     +G   M+AA DTFR+AA+ Q+++W DR+    V +    +D 
Sbjct: 293 NGVGKTTTLGKLANLAVRSGYSAMIAAADTFRAAAVQQVQVWGDRSDVPVVANPSDNADP 352

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   A++K  D++++DTAGRL     LM  + K+ RV+ RL P A    L VLD
Sbjct: 353 AAVVFDAIGAARSKGTDLVLVDTAGRLQTKHNLMEELNKIRRVVDRLAPDATVESLLVLD 412

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A+ GQN L+Q   F   AG TG+++TK+DGTARGG  + +     +P+ F+G GEGI DL
Sbjct: 413 ASQGQNGLKQAMAFARAAGLTGVVITKLDGTARGGVALAVASEAGLPIRFIGAGEGIRDL 472

Query: 299 EPFVAKDF 306
            PF + +F
Sbjct: 473 RPFNSFEF 480


>gi|296129311|ref|YP_003636561.1| signal recognition particle-docking protein FtsY [Cellulomonas
           flavigena DSM 20109]
 gi|296021126|gb|ADG74362.1| signal recognition particle-docking protein FtsY [Cellulomonas
           flavigena DSM 20109]
          Length = 399

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 169/279 (60%), Gaps = 18/279 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTK---------RYAKDVSVQRVLYDVSELIHKMLM 97
           +ELE+ L+ +D+G     ++++ L T+           A+ V  +++L  V   + + L 
Sbjct: 126 DELEETLLLADVGAGPTDELIDALRTRVRVDGLRDGEQARAVLREQLLALVDPSLDRTLA 185

Query: 98  PLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             ++P   +   R P V+LVVGVNG GKTT +GKL++ +   G +V+L A DTFR+AA D
Sbjct: 186 --TEPTTAEDGQRLPAVVLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAAD 243

Query: 157 QLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           QL+ W  R     V S+  G+D AA+A++A +   A   DV+++DTAGRL N + LM  +
Sbjct: 244 QLQTWGSRVGVPTVRSDRDGADPAAVAFDAVRTGVADGADVVLVDTAGRLQNKAGLMDEL 303

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
           GK+ RV+ R  P +   VL VLDATTGQN L Q  +F  VAG TG+++TK+DGTA+GG +
Sbjct: 304 GKITRVITRTAPLS--EVLLVLDATTGQNGLNQARVFGEVAGVTGIVLTKLDGTAKGGIV 361

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           + +     +PV  +G+GEG +DL PF   D  A + G L
Sbjct: 362 VAVQRELGVPVKLVGLGEGPDDLAPF---DPEAFVDGLL 397


>gi|309810309|ref|ZP_07704147.1| signal recognition particle-docking protein FtsY [Dermacoccus sp.
           Ellin185]
 gi|308435737|gb|EFP59531.1| signal recognition particle-docking protein FtsY [Dermacoccus sp.
           Ellin185]
          Length = 422

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/282 (41%), Positives = 166/282 (58%), Gaps = 17/282 (6%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           DD   E++ED L+++D+GV    +IV+ L  +      + +     VS  +H+ L+    
Sbjct: 150 DDEAWEDVEDTLLQADLGVEATTQIVDNLKRRIAVHGATDEET---VSGWLHEELLAQVG 206

Query: 102 PFNWD-------FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           P + D          RP V+LVVGVNG GKTT +GKL++ +      V+L A DTFR+AA
Sbjct: 207 P-DMDRRIAASRVGDRPAVVLVVGVNGTGKTTTVGKLARVLVAEDKDVILGAADTFRAAA 265

Query: 155 IDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
            DQL+ W  R     V SE  G+D AA+A++A K  Q  + DV+++DTAGRLHN   LM 
Sbjct: 266 ADQLETWGARVGVPTVRSEKEGADPAAVAFDAVKAGQENECDVVLLDTAGRLHNKVGLMD 325

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + KM RV+++  P     VL VLDATTGQN +RQ E+F      TG+++TK+DGTA+GG
Sbjct: 326 ELAKMKRVIEKRSPI--DEVLLVLDATTGQNGMRQAEVFGQAVDVTGVVLTKLDGTAKGG 383

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            ++ +     +PV  +G+GEG +DL PF   D  A +   LD
Sbjct: 384 IVVNVQRELGVPVKLVGLGEGPDDLAPF---DPEAYVNAVLD 422


>gi|154486490|ref|ZP_02027897.1| hypothetical protein BIFADO_00305 [Bifidobacterium adolescentis
           L2-32]
 gi|154084353|gb|EDN83398.1| hypothetical protein BIFADO_00305 [Bifidobacterium adolescentis
           L2-32]
          Length = 424

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/281 (39%), Positives = 172/281 (61%), Gaps = 13/281 (4%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93
           +I++  +L +   E++ED L+ +D+G   ++++VEEL   R    ++ Q    +V   + 
Sbjct: 143 NILAKDQLSEADWEDVEDTLLLADVGAEASEQLVEEL---RNDARIAGQSDPAEVRAALK 199

Query: 94  KMLMPLSK-------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             L+ L           N + +++P VI++VGVNG GKTT  GKLS+ +   G +VML A
Sbjct: 200 DKLLKLVGIDTDRRLNANKEGANKPSVIIMVGVNGTGKTTTAGKLSRLLVSEGKQVMLGA 259

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
            DTFR+AA DQL+ W  +     V S+  G+D A++A+EA  +A+ +  DVLIIDTAGRL
Sbjct: 260 ADTFRAAAADQLETWGAKVGVPVVRSDKDGADPASVAFEASAKAKEENADVLIIDTAGRL 319

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N S LM  +GK+ RV ++  P     VL VLDATTGQN + Q ++F    G TG++++K
Sbjct: 320 QNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTGQNGMTQAKVFAEAIGITGVVLSK 377

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +DG+A+GG +I +     +PV  +G+GEG +DL PF  + F
Sbjct: 378 LDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFDPEGF 418


>gi|297626602|ref|YP_003688365.1| Signal recognition particle receptor [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922367|emb|CBL56939.1| Signal recognition particle receptor [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 384

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/284 (38%), Positives = 168/284 (59%), Gaps = 9/284 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQR 83
           L   + D++S  ++DD   ++ E  LI SD+GV  A ++VE L         A   + ++
Sbjct: 98  LARALADLLSVDKIDDETWDDFESTLIASDLGVGPATELVENLRKALAVGGVADPAAARK 157

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
            L    ELI  +   +S+  N D +   P V+++VGVNG GKTT +GKL + +   G  V
Sbjct: 158 ALR--GELIKIVGPDMSRDLNLDHAESVPAVVMMVGVNGTGKTTTVGKLGRMLVAQGRTV 215

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +  A DTFR+AA +QL  W +R     V  + G+D A++A+ A  +   + VDV+++DTA
Sbjct: 216 LFGAADTFRAAAAEQLTTWGERVGVRTVRGDEGADPASVAFNAVDEGITEGVDVVLVDTA 275

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH    LM  +GK+ RV+++  P   + VL V+DATTGQN L Q  +F  V   TG++
Sbjct: 276 GRLHTKVGLMDELGKVKRVIEKKAPV--NEVLLVIDATTGQNGLTQARIFAEVVDITGIV 333

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +TK+DG+A+GG ++ +     +PV F+G+GEG +DL PF A  F
Sbjct: 334 LTKLDGSAKGGIVVQVQRELGVPVKFIGLGEGPDDLAPFDAAQF 377


>gi|113955324|ref|YP_729250.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           CC9311]
 gi|113882675|gb|ABI47633.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           CC9311]
          Length = 551

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/313 (35%), Positives = 176/313 (56%), Gaps = 11/313 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S ++V  E + W+ +L +G   T      G+ + +    L   V ++LE LL+R+D GV 
Sbjct: 234 SAEQVTLEEIDWLGRLRQGLEKTRQGFVTGLLENLGDDPLTPEVLDDLESLLLRADAGVQ 293

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-------SHRPHVI 114
              ++++ L  +   + V     +  + E +  +L    +P              R +V 
Sbjct: 294 ATDQVLDALRQRMNEQVVDPSEGIRFLKEQLRDLL---DEPIKSSAVEVLAPQRDRLNVW 350

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE- 173
           L+VGVNGVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W DR+    V +  
Sbjct: 351 LLVGVNGVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVQVWGDRSDVPVVANPS 410

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +D AA+ ++A   A++K  D++++DTAGRL     LM  + K+ RV+ RL P A    
Sbjct: 411 ANADPAAVVFDAIGAARSKGTDLVLVDTAGRLQTKHNLMEELEKIRRVVDRLAPEAHVES 470

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLDA+ GQN L+Q   F   AG TG+++TK+DGTARGG  + +    K+P+ F+G GE
Sbjct: 471 LLVLDASQGQNGLKQAMAFARAAGLTGVVITKLDGTARGGVALAVASEAKLPIRFIGAGE 530

Query: 294 GINDLEPFVAKDF 306
           GI DL PF + +F
Sbjct: 531 GIRDLRPFNSFEF 543


>gi|317125424|ref|YP_004099536.1| signal recognition particle-docking protein FtsY [Intrasporangium
           calvum DSM 43043]
 gi|315589512|gb|ADU48809.1| signal recognition particle-docking protein FtsY [Intrasporangium
           calvum DSM 43043]
          Length = 423

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/272 (41%), Positives = 164/272 (60%), Gaps = 12/272 (4%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           D+   E++ED LI SD+GV   ++++  L T+      + +     V E + + L+ L +
Sbjct: 151 DEEAWEDVEDTLIASDLGVEATEELIASLRTRVKVDGTTDEAT---VREWLREDLLRLVQ 207

Query: 102 P------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           P       +     RP VILVVGVNG GKTT +GKL++ +      V+L A DTFR+AA 
Sbjct: 208 PDMDRRIASSRVGTRPAVILVVGVNGTGKTTTVGKLARVLVAEDRDVLLGAADTFRAAAA 267

Query: 156 DQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           DQL  W  R     V S+  G+D AA+A++A K    ++VDV+IIDTAGRLHN   LM  
Sbjct: 268 DQLDTWGARVGVPTVRSDREGADPAAVAFDAVKAGIEQEVDVVIIDTAGRLHNKVDLMNE 327

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           +GK+ RV+++L       VL VLDATTGQN L+Q ++F      TG+++TK+DGTA+GG 
Sbjct: 328 LGKVKRVIEKL--SEIDEVLLVLDATTGQNGLQQAKVFSEAVDVTGIVLTKLDGTAKGGI 385

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++ +     +PV  +G+GEG +DL PF   DF
Sbjct: 386 VVAVQRQLGVPVKLVGLGEGPDDLAPFEPADF 417


>gi|298244305|ref|ZP_06968111.1| signal recognition particle-docking protein FtsY [Ktedonobacter
           racemifer DSM 44963]
 gi|297551786|gb|EFH85651.1| signal recognition particle-docking protein FtsY [Ktedonobacter
           racemifer DSM 44963]
          Length = 337

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 179/313 (57%), Gaps = 19/313 (6%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++ + +   ++ +  + F+  S  ++E  TD+I+    DD     LE+ L+ +D+G +  
Sbjct: 34  EQQSPQRFGFLNRTRQLFSRMSEVVEE--TDLITDEMWDD-----LEESLLAADVGPSTT 86

Query: 64  QKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH--VILVV 117
             ++E L  +   + +     VQR L +      +++M L  P     S R    VILV+
Sbjct: 87  IWLIERLRQRAENEHMRTGAQVQRALRE------ELVMLLGDPSPLRLSQRSPLTVILVI 140

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNG GKTT I K++ ++S  G +V+LAA DTFR+AAIDQLK W  R S   +  +  +D
Sbjct: 141 GVNGSGKTTSIAKMAHRLSREGRQVILAAADTFRAAAIDQLKEWGQRISVPVISQQPNAD 200

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+ Y+A + AQ++  DVLI+DTAGRLH    LM  + K+ +V+++  P  PH +L V+
Sbjct: 201 PGAVVYDAIQAAQSRGSDVLIVDTAGRLHTKYNLMEELKKINKVIQKFIPDGPHELLIVI 260

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQNAL Q   F    G TG+I++K+D TA+GG    +     +P+ F+  GE + +
Sbjct: 261 DATTGQNALLQARKFAEDIGLTGVIISKLDSTAKGGFAFAVADDLGVPIKFIATGEKVEN 320

Query: 298 LEPFVAKDFSAVI 310
           L PF  + F A +
Sbjct: 321 LIPFDPQSFVAAL 333


>gi|282895592|ref|ZP_06303726.1| Cell division transporter substrate-binding protein FtsY
           [Raphidiopsis brookii D9]
 gi|281199432|gb|EFA74296.1| Cell division transporter substrate-binding protein FtsY
           [Raphidiopsis brookii D9]
          Length = 542

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 178/308 (57%), Gaps = 5/308 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + ++ E ++W++KL +G   T   +   +  I+    L+     E+E +L+++D+GV   
Sbjct: 229 EDISIEEITWLKKLRQGLDKTRRNILNQLKAIVGQGPLNQDAVAEIEGVLLQADVGVEAT 288

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPH---VILVVGV 119
             I++ L  K   +    ++ +  + +++  ML  PL       F+       + L+ GV
Sbjct: 289 DLIIQSLQKKLRDEVTPPEQAIAYLKQILRDMLEKPLESAPRSGFAPEKDKLTIWLITGV 348

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGK++     +G   ++AA DTFR+AA++Q+K+W  R+  + + +    +D 
Sbjct: 349 NGAGKTTTIGKIAHLAQKSGYNCLIAAADTFRAAAVEQVKVWGSRSGVEVIANPGKNTDP 408

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQ++K ++L++DTAGRL N   LM  + K+ R++ +    A    L VLD
Sbjct: 409 AAIVFDAIAAAQSRKTELLLVDTAGRLQNKKNLMDELSKIRRIIDKKAADARVESLLVLD 468

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +T GQN +RQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G GEGI DL
Sbjct: 469 STLGQNGIRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 528

Query: 299 EPFVAKDF 306
            PF + +F
Sbjct: 529 RPFSSYEF 536


>gi|154509175|ref|ZP_02044817.1| hypothetical protein ACTODO_01696 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798809|gb|EDN81229.1| hypothetical protein ACTODO_01696 [Actinomyces odontolyticus ATCC
           17982]
          Length = 413

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/311 (38%), Positives = 184/311 (59%), Gaps = 17/311 (5%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + +L +  AS+   L   I  ++S  +L     EE+E+ L+ +D+G+     ++E L  +
Sbjct: 106 MERLRERLASSG-SLGRAILGVLSRGQLGAADWEEIEESLLIADLGLEATDTLMEALKRR 164

Query: 74  RYAKDVSVQ---------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
              + V+ +          +L  V   + + L  L +P   D S +P V+L+VGVNG GK
Sbjct: 165 VAVESVTDEARIREILREELLELVDPAMDRSLN-LERP-EVDGSVKPAVVLMVGVNGTGK 222

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183
           TT +GKL++ +      V+L A DTFR+AA DQL  W +R   D V S+  G+D A++A+
Sbjct: 223 TTTVGKLARILVAEDKSVILGAADTFRAAAADQLATWGERVGVDVVRSDREGADPASVAF 282

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS-VLQVLDATTG 242
           EA ++   + VDV+++DTAGRL N S LM  +GK+ RV+ +    AP S VL VLDATTG
Sbjct: 283 EAVREGVERDVDVVLVDTAGRLQNKSTLMDELGKIKRVMTK---QAPVSEVLLVLDATTG 339

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN ++Q E+F    G TG+++TK+DG+A+GG ++ +     +PV F+G+GEG +DL PF 
Sbjct: 340 QNGMKQAEVFAEATGVTGIVLTKLDGSAKGGIVVSVQRALGVPVKFVGLGEGADDLAPFD 399

Query: 303 AKDFSAVITGC 313
            + F   I G 
Sbjct: 400 PQGFVDAIVGS 410


>gi|116071796|ref|ZP_01469064.1| Cell division transporter substrate-binding protein FtsY
           [Synechococcus sp. BL107]
 gi|116065419|gb|EAU71177.1| Cell division transporter substrate-binding protein FtsY
           [Synechococcus sp. BL107]
          Length = 530

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 182/315 (57%), Gaps = 8/315 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ E + W+ +L +G   T      G+ + +    L   V +ELE LL+R+D GV    
Sbjct: 216 QISLEEIDWLGRLRRGLEKTRQGFVTGLLENLGDDPLTPEVLDELETLLLRADAGVQATD 275

Query: 65  KIVEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPLSK---PFNWDFSHRPHVILVVGV 119
           +++E  L +R  +DV   V+ + +   +L   +  P+     P       R ++ L+VGV
Sbjct: 276 QVLE-ALRQRMNEDVVDPVEGIRFLKDQLRGLLDAPIKASGVPLLAPERGRLNIWLMVGV 334

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDA 178
           NGVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W +R+    V +    +D 
Sbjct: 335 NGVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVEVWGERSDVAVVSNPSSNADP 394

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   A+++  D+L++DTAGRL     LM  + K+ +++ RL P A    L VLD
Sbjct: 395 AAVVFDAIGAARSRDTDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEANVESLLVLD 454

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A+ GQN LRQ   F   AG TG+++TK+DGTARGG  + +     +P+ F+G GEGI DL
Sbjct: 455 ASQGQNGLRQAMAFAKAAGLTGVVVTKLDGTARGGVALAVSSEAGLPIRFIGAGEGIRDL 514

Query: 299 EPFVAKDF-SAVITG 312
            PF + +F  A++ G
Sbjct: 515 RPFNSFEFVEALLAG 529


>gi|213691143|ref|YP_002321729.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|213522604|gb|ACJ51351.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|320457201|dbj|BAJ67822.1| signal recognition particle-docking protein [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 420

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 181/301 (60%), Gaps = 13/301 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +++L    + +     + + +I++  +L +   E++ED L+ +D+G   ++++VEEL   
Sbjct: 119 MQRLKARLSKSGNPFGKALFNILAKDQLSEADWEDVEDTLLLADVGAEASEQLVEEL--- 175

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWD--FSHRPHVILVVGVNGVGKTT 126
           R    ++ Q    +V   +   L+ L      +  N D   +++P V+++VGVNG GKTT
Sbjct: 176 RNDARIAGQSDPAEVRAALKDKLLKLVGTDIDRRLNADKDGANKPSVVIMVGVNGTGKTT 235

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEA 185
             GKLS+ +   G +VM+ A DTFR+AA DQL+ W  R +   V S+  G+D A++A+EA
Sbjct: 236 TAGKLSRLLVSEGKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVAFEA 295

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL VLDATTGQN 
Sbjct: 296 SAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTGQNG 353

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL PF  + 
Sbjct: 354 MAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFDPEG 413

Query: 306 F 306
           F
Sbjct: 414 F 414


>gi|171912808|ref|ZP_02928278.1| signal recognition particle-docking protein FtsY [Verrucomicrobium
           spinosum DSM 4136]
          Length = 281

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/260 (40%), Positives = 156/260 (60%), Gaps = 3/260 (1%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           ++LE  LI  D+G  ++ +IV++L  K  A+ +  Q ++    + I ++L     P    
Sbjct: 20  DDLEAQLIAGDLGAKLSMQIVDDL--KDQARKLHDQDIVEVTKKHIRRILPETVAPVK-P 76

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           F  +P V+L+VGVNG GKTT   KL+  +   G  ++LAA DTFR+AA++QL++WA R  
Sbjct: 77  FGDKPKVLLIVGVNGTGKTTSTAKLANLLKKQGHSLVLAAADTFRAAAVEQLEVWAKRVD 136

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +      D +A+ ++A+  A A+K D LI DTAGRLH    LM  + K+ R L + D
Sbjct: 137 VPIIKGPPNGDPSAVCFDAYSSAIARKADFLICDTAGRLHTRHNLMEELRKVQRTLGKKD 196

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P APH VL V+DATTG NAL+Q + F+     TG+I+TK+DG+ +GG L+ I     IP 
Sbjct: 197 PTAPHEVLLVVDATTGGNALQQAKEFNKTVPLTGVIVTKLDGSGKGGVLVAIQQELGIPA 256

Query: 287 YFLGVGEGINDLEPFVAKDF 306
            F+G GE + D E FV + F
Sbjct: 257 RFVGTGEHMEDFEAFVPETF 276


>gi|310288155|ref|YP_003939414.1| Cell division protein ftsY [Bifidobacterium bifidum S17]
 gi|309252092|gb|ADO53840.1| Cell division protein ftsY [Bifidobacterium bifidum S17]
          Length = 413

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/309 (38%), Positives = 184/309 (59%), Gaps = 13/309 (4%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V  ES S I++L    + +S    + + +I++   L +   E++ED L+ +D+G   +++
Sbjct: 104 VPEESGSRIQRLKAKLSKSSNPFGKALFNILTKDNLSESDWEDVEDTLLLADVGAEASEQ 163

Query: 66  IVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVG 118
           +V EL     +T + + D  V+  L D   L+  +     +  N D   +H+P VI++VG
Sbjct: 164 LVGELRRDARITGKASPD-EVRATLRD--NLLDLVGRDTDRRLNVDKPDAHKPGVIIMVG 220

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSD 177
           VNG GKTT  GKL++       KV++ A DTFR+AA DQL+ W  R +   V S+  G+D
Sbjct: 221 VNGTGKTTTAGKLARLFVSEDKKVVMGAADTFRAAAADQLETWGARVNVPVVRSDKDGAD 280

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL VL
Sbjct: 281 PASVAFEAAARAKEDDADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVL 338

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +D
Sbjct: 339 DATTGQNGMAQAKVFAEAIGLTGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDD 398

Query: 298 LEPFVAKDF 306
           L PF  + F
Sbjct: 399 LAPFDPEGF 407


>gi|269925892|ref|YP_003322515.1| signal recognition particle-docking protein FtsY [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789552|gb|ACZ41693.1| signal recognition particle-docking protein FtsY [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 314

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 166/301 (55%), Gaps = 8/301 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73
           K+  G   +   +   +  +     + D   EELE+LLI +D+GV     +++ L  +  
Sbjct: 18  KIESGLEKSRRGIFSQVAALFDREEITDSTWEELEELLIAADVGVETTLMLLDVLQDRVE 77

Query: 74  --RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             R  +   +++ L +  EL   +    ++P   +      V+L+VGVNGVGKTT + KL
Sbjct: 78  AERIRRPSELRKALKE--ELQAILDSAPNQPVEVN-DGELLVMLIVGVNGVGKTTTVAKL 134

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K +  G KV++ A DTFR+AAIDQL+IW +R     +     SD AA+ ++A   A++
Sbjct: 135 AHKFASEGAKVVVGAADTFRAAAIDQLQIWGERAGVPVIAGAPNSDPAAVVHDALAAARS 194

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVLI+DTAGRLH    LM  + K+ RV+ R    A  ++L VLDATTGQN L Q   
Sbjct: 195 RSADVLIVDTAGRLHTKYNLMEELKKIQRVIDRNGSPAQENLL-VLDATTGQNGLVQARK 253

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G+++ KMDGTA+GG    IV   KIP+ +L  GE + D+  F +KDF   + 
Sbjct: 254 FAQAVHLDGVVLAKMDGTAKGGIAFAIVNEMKIPIRYLTTGEKLGDIAEFDSKDFVNALL 313

Query: 312 G 312
           G
Sbjct: 314 G 314


>gi|289523210|ref|ZP_06440064.1| signal recognition particle-docking protein FtsY [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503753|gb|EFD24917.1| signal recognition particle-docking protein FtsY [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 305

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/272 (38%), Positives = 165/272 (60%), Gaps = 6/272 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKM- 95
           +++D+   + LE+ L+  D+GV +  ++V EL  +    ++   R L +  V  ++ K+ 
Sbjct: 30  KKIDESFWDGLEEQLLLGDVGVDLTDELVAELRQEARKSNIKDTRDLKEKFVDLIVRKLE 89

Query: 96  -LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            +  + KP   +  ++P V+L+VGVNG GKTT   KL+ K++  G KV+LAA DT+R+AA
Sbjct: 90  EIPGMGKPI--ETKNKPAVVLLVGVNGSGKTTTAAKLASKLASEGKKVLLAAADTYRAAA 147

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           IDQLK+W ++ +   V  ++G D AA+ Y+A + A A   D++I DTAGRLH    LM  
Sbjct: 148 IDQLKVWGEKINVRVVAHDVGGDPAAVIYDAIESAVASDGDLVIADTAGRLHTKHNLMEE 207

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+ RV++R  P  P   L VLDA  GQNA  Q E+F+     TG+I+ K D TA+GG 
Sbjct: 208 LKKVKRVVERRLPDEPSESLLVLDAVMGQNAFYQAEVFNEALSLTGVILAKYDNTAKGGI 267

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++ +     +P+ ++G+GEG  DLE F  + F
Sbjct: 268 ILAVAQRMSLPIRYVGLGEGSEDLELFEPRSF 299


>gi|224283584|ref|ZP_03646906.1| Signal recognition particle GTPase [Bifidobacterium bifidum NCIMB
           41171]
 gi|313140735|ref|ZP_07802928.1| FtsY signal recognition particle [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133245|gb|EFR50862.1| FtsY signal recognition particle [Bifidobacterium bifidum NCIMB
           41171]
          Length = 413

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/309 (38%), Positives = 184/309 (59%), Gaps = 13/309 (4%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V  ES S I++L    + +S    + + +I++   L +   E++ED L+ +D+G   +++
Sbjct: 104 VPEESGSRIQRLKAKLSKSSNPFGKALFNILTKDNLSESDWEDVEDTLLLADVGAEASEQ 163

Query: 66  IVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVG 118
           +V EL     +T + + D  V+  L D   L+  +     +  N D   +H+P VI++VG
Sbjct: 164 LVGELRRDARITGKASPD-EVRATLRD--NLLDLVGRDTDRRLNVDKPDAHKPGVIIMVG 220

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSD 177
           VNG GKTT  GKL++       KV++ A DTFR+AA DQL+ W  R +   V S+  G+D
Sbjct: 221 VNGTGKTTTAGKLARLFVSEDKKVVMGAADTFRAAAADQLETWGARVNVPVVRSDKDGAD 280

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL VL
Sbjct: 281 PASVAFEAAARAKEDDADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVL 338

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +D
Sbjct: 339 DATTGQNGMAQAKVFAEAIGLTGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDD 398

Query: 298 LEPFVAKDF 306
           L PF  + F
Sbjct: 399 LAPFDPEGF 407


>gi|88596279|ref|ZP_01099516.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|157415469|ref|YP_001482725.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|88191120|gb|EAQ95092.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|157386433|gb|ABV52748.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|284926430|gb|ADC28782.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|307748111|gb|ADN91381.1| Signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315932351|gb|EFV11294.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 288

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/267 (36%), Positives = 153/267 (57%), Gaps = 13/267 (4%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           LE++L+ +D+   + ++I+  L  +   K   ++RV+           +   K  N +  
Sbjct: 31  LEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVM-------GSYFLYEKKETNQE-- 81

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P V L++GVNG GKTT I KL+    +   KV+L A DTFR+ AI+QLK+WA +   D
Sbjct: 82  -KPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVD 140

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V +  G D +A+A++   +A+AK  D +IIDTAGRL N   L   + K++R+  +    
Sbjct: 141 IVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEG 200

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH  + VLD T G   + Q + F+ +    G+I+TK+DGTA+GG L  I    ++P+++
Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFY 260

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE + DL+ F A   SA +   LD
Sbjct: 261 VGVGEQMTDLQEFNA---SAYLDTLLD 284


>gi|162451180|ref|YP_001613547.1| cell division membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161161762|emb|CAN93067.1| cell division membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 453

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/274 (36%), Positives = 165/274 (60%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           + +D  V E++E++L+ SD+GV   + +++E+ +     +++    ++D      K ++ 
Sbjct: 170 KEIDPNVVEQIEEVLLTSDVGVKTTELLLDEIRSALSRNELADTDKVWDALREHAKRILR 229

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +          +P V++VVGVNGVGKTT IGKL+ ++   G  V+LAAGDTFR+AA+ QL
Sbjct: 230 VGAGGGLPLKAQPTVVMVVGVNGVGKTTTIGKLATQLKAEGRTVVLAAGDTFRAAAVQQL 289

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
            +W  R   + V  + G++  A+ ++A ++A+    DV++ DTAGRLH  + LM  + ++
Sbjct: 290 NVWGKRVGCEVVRGKDGANPGAVIFDAIQKAKDTGADVVLADTAGRLHTKTNLMEELSRV 349

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            R + +    APH  L VLDAT GQNA++Q  +F      TG+++TK+DGTA+GG ++ I
Sbjct: 350 ARTMNKALEGAPHETLLVLDATNGQNAMQQAALFKEALPITGIVLTKLDGTAKGGVILGI 409

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              H +PV ++G+GE   DL  F   +F   + G
Sbjct: 410 CAEHGLPVRYVGIGERAEDLREFEPDEFVEAMLG 443


>gi|255078482|ref|XP_002502821.1| type II secretory pathway family [Micromonas sp. RCC299]
 gi|226518087|gb|ACO64079.1| type II secretory pathway family [Micromonas sp. RCC299]
          Length = 382

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/269 (39%), Positives = 158/269 (58%), Gaps = 19/269 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAK---------DVSVQRVLYDVSELIHKMLM 97
           EELED L+  D G   A  I++ ++ +R  K           +++R + D+    +    
Sbjct: 103 EELEDTLLSVDFGPTTAMNILD-VVRERCEKGEIKTGAEVKAALKRAIVDILVRANDG-K 160

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAID 156
             + P   +    P VI+VVGVNG GKTT +GKLS + + ++G KVML  GDTFR+AA +
Sbjct: 161 EGTAPLKLNEGDGPSVIMVVGVNGGGKTTTVGKLSHRFAKESGAKVMLVPGDTFRAAAAE 220

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QAKKVDVLIIDTAGRLHNNSILM--- 212
           QL  WA+R++      + G    AL Y+A  +A +   +D+++ DT+GRLH N  LM   
Sbjct: 221 QLATWAERSAGVMATYKDGMKPGALCYQAVDEAIKMGDIDIVLADTSGRLHTNCDLMDEL 280

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
           AGI K I   KR++  +PH V  VLD TTG N L Q   F+ +   TG+I+TK+DGT++G
Sbjct: 281 AGIKKSIG--KRME-GSPHEVALVLDGTTGLNMLNQAREFNKMVDVTGIILTKLDGTSKG 337

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G ++ +V    +PV F+GVGE I+DL+ F
Sbjct: 338 GAVVSVVDELGVPVKFVGVGEAIDDLQTF 366


>gi|283956599|ref|ZP_06374078.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791848|gb|EFC30638.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 288

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 148/258 (57%), Gaps = 10/258 (3%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           LE++L+ +D+   + ++IV  L  +   K   ++RV+           +   K  N    
Sbjct: 31  LEEILLEADVSYEIVEEIVYYLPPQNEVKKEDLKRVM-------GSYFLYEKKETN---Q 80

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P V L++GVNG GKTT I KL+    +   KV+L A DTFR+ AI+QLK+WA +   D
Sbjct: 81  EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVD 140

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V +  G D +A+A++   +A+AK  D +IIDTAGRL N   L   + K++R+  +    
Sbjct: 141 IVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEG 200

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH  + VLD T G   + Q + F+ +    G+I+TK+DGTA+GG L  I    ++P+++
Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFY 260

Query: 289 LGVGEGINDLEPFVAKDF 306
           +GVGE + DL+ F A  +
Sbjct: 261 VGVGEQMTDLQEFNANAY 278


>gi|315639091|ref|ZP_07894259.1| cell division protein FtsY [Campylobacter upsaliensis JV21]
 gi|315480867|gb|EFU71503.1| cell division protein FtsY [Campylobacter upsaliensis JV21]
          Length = 288

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 164/288 (56%), Gaps = 17/288 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           F  +  K  E IT   ++ ++    ++ LE++L+ +D+   + ++I+  L      K   
Sbjct: 5   FKKSLAKTLENITKTRANHKIS---KDLLEEILLEADVAYEIVEEIIYYLPPTDEVKKAD 61

Query: 81  VQRVL--YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           ++RV+  Y + E       P S       + +P V L++GVNG GKTT I KL+      
Sbjct: 62  LKRVMGAYFLYE------NPESS------TQKPFVELILGVNGAGKTTSIAKLANLYKKQ 109

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G KV+L A DTFR+ AI+QL++WA++     V S  G D +A+A++   +A+A+  D +I
Sbjct: 110 GQKVILGACDTFRAGAIEQLRLWAEKIGVQIVLSNQGHDPSAVAFDTISKAKARDFDRVI 169

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL N   L   + K++R+ ++   +APH  + VLD T G   + Q + F+ +   
Sbjct: 170 LDTAGRLQNQKNLANELEKIVRICEKAMTNAPHRKILVLDGTQGNAGILQAKAFNELIKL 229

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            G+I+TK+DGTA+GG L  I    ++P++++GVGE ++DL  F A  +
Sbjct: 230 DGVIITKLDGTAKGGALFSIARELELPIFYVGVGEKMDDLYEFDANAY 277


>gi|86150925|ref|ZP_01069141.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|315124672|ref|YP_004066676.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85842095|gb|EAQ59341.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|315018394|gb|ADT66487.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 288

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 97/267 (36%), Positives = 152/267 (56%), Gaps = 13/267 (4%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           LE++L+ +D+   + ++I+  L  +   K   ++RV+           +   K  N    
Sbjct: 31  LEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVM-------GSYFLYEKKETN---Q 80

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P V L++GVNG GKTT I KL+    +   KV+L A DTFR+ AI+QLK+WA +   D
Sbjct: 81  EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVD 140

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V +  G D +A+A++   +A+AK  D +IIDTAGRL N   L   + K++R+  +    
Sbjct: 141 IVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEG 200

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH  + VLD T G   + Q + F+ +    G+I+TK+DGTA+GG L  I    ++P+++
Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFY 260

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE + DL+ F A   SA +   LD
Sbjct: 261 VGVGEQMTDLQEFNA---SAYLDTLLD 284


>gi|86150380|ref|ZP_01068606.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|148926209|ref|ZP_01809894.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|205356228|ref|ZP_03222994.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|85839205|gb|EAQ56468.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|145845380|gb|EDK22473.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|205345833|gb|EDZ32470.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 288

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 97/267 (36%), Positives = 153/267 (57%), Gaps = 13/267 (4%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           LE++L+ +D+   + ++I+  L  +   K   ++RV+           +   K  N +  
Sbjct: 31  LEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVM-------GSYFLYEKKETNQE-- 81

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P V L++GVNG GKTT I KL+    +   KV+L A DTFR+ AI+QLK+WA +   D
Sbjct: 82  -KPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVD 140

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V +  G D +A+A++   +A+AK  D +IIDTAGRL N   L   + K++R+  +    
Sbjct: 141 IVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEG 200

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH  + VLD T G   + Q + F+ +    G+I+TK+DGTA+GG L  I    ++P+++
Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFY 260

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE + DL+ F A   SA +   LD
Sbjct: 261 VGVGEQMTDLQEFNA---SAYLDTLLD 284


>gi|33242339|ref|NP_877280.1| ftsY cell division protein [Chlamydophila pneumoniae TW-183]
 gi|33236850|gb|AAP98937.1| ftsY cell division protein [Chlamydophila pneumoniae TW-183]
          Length = 310

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/255 (36%), Positives = 140/255 (54%), Gaps = 3/255 (1%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E+ E L   +D G  + +++   L   R+ K      +   ++ L+ + L  L    +  
Sbjct: 43  EDAESLFYEADFGTELTEELCARL---RWTKKADASTIKDLITVLLRESLEGLPSQASQS 99

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              RP V L++G NG GKTT   KL+    +    VML A DTFR+A +DQ ++WA+   
Sbjct: 100 SQTRPIVSLLLGTNGSGKTTTAAKLAHYYKERSESVMLVATDTFRAAGMDQARLWANELG 159

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             FV  + G DAAA+A++  + A A+    +IIDT+GRLH +  LM  + K++ V  +  
Sbjct: 160 CGFVSGQPGGDAAAIAFDGIQSAIARGYSRVIIDTSGRLHVHGNLMKELSKIVSVCGKAL 219

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             APH +   +D+T G NA+ QV +FH V   +GLI TK+DG+A+GG L  I    KIP 
Sbjct: 220 EGAPHEIFMTVDSTLGNNAIEQVRVFHDVVPLSGLIFTKVDGSAKGGTLFQIAKRLKIPT 279

Query: 287 YFLGVGEGINDLEPF 301
            F+G GE + DL  F
Sbjct: 280 KFIGYGESLKDLNEF 294


>gi|39939165|ref|NP_950931.1| signal recognition particle-docking protein FtsY [Onion yellows
           phytoplasma OY-M]
 gi|39722274|dbj|BAD04764.1| signal recognition particle-docking protein [Onion yellows
           phytoplasma OY-M]
          Length = 347

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 130/202 (64%), Gaps = 6/202 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P + L  GVNGVGKTT IGK+++ +   G KV+L A DTFR+ A++QL+IWA R   
Sbjct: 134 NNLPQMYLFTGVNGVGKTTTIGKMAEALKQEGKKVLLIAADTFRAGAVEQLQIWAKRVGV 193

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           +  C  + +  A++ +E  + A+++  D+++ DTAGRL N + LM  + K+ RV+ +   
Sbjct: 194 EVFCKPLPAHPASVIFEGIELAKSQNYDIILCDTAGRLQNKTNLMQELSKINRVICK--- 250

Query: 228 HAPHSVLQ---VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           H P S LQ   VLDATTGQNA+ QV++F+     +G I+TK+DGT++GG +  I   + +
Sbjct: 251 HLPASNLQTFLVLDATTGQNAINQVDLFNQATPLSGAILTKLDGTSKGGIVFAIKYLYNL 310

Query: 285 PVYFLGVGEGINDLEPFVAKDF 306
           P  ++GVGE   DL  F  K++
Sbjct: 311 PTKYIGVGEKSQDLITFDVKNY 332


>gi|118475105|ref|YP_891693.1| signal recognition particle-docking protein FtsY [Campylobacter
           fetus subsp. fetus 82-40]
 gi|261886461|ref|ZP_06010500.1| signal recognition particle-docking protein FtsY [Campylobacter
           fetus subsp. venerealis str. Azul-94]
 gi|118414331|gb|ABK82751.1| signal recognition particle-docking protein FtsY [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 289

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 159/293 (54%), Gaps = 22/293 (7%)

Query: 28  LKEGITDIISSRRLDDGVREE-LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV-- 84
           L++ I  + S+R  D  + ++ LE+LL+ +D+   + ++I+  L  K       + RV  
Sbjct: 9   LEKTINAVASNRPQDKKITKDILEELLLEADVPYEITEEIIYYLPPKDIVSKDDLTRVMQ 68

Query: 85  ---LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
              LYD                N     +P + +++GVNG GKTT I KL+     +G  
Sbjct: 69  TYFLYD----------------NKKIEAKPFIQMIIGVNGAGKTTTIAKLANLYKTSGKS 112

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+L A DTFR+ A++Q+K+WA++     + S  G D AA+A++    A AK+ D  IIDT
Sbjct: 113 VLLGASDTFRAGAVEQIKLWANKLDVPIIASSQGHDPAAVAFDTISSAVAKRYDYAIIDT 172

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL N   L + + K++R+  +    APH  + VLD T G   + Q + F+ +    G+
Sbjct: 173 AGRLQNQKNLASELEKIVRISNKAFEGAPHQKILVLDGTQGSAGVAQAKAFNDIVKIDGV 232

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           I+TK+DGT++GG L  +    ++P+ ++GVGE + DL  F AK+F   I   +
Sbjct: 233 IITKLDGTSKGGALFGVARELELPILYIGVGERMEDLIKFDAKEFVDTICDAI 285


>gi|223939371|ref|ZP_03631250.1| signal recognition particle-docking protein FtsY [bacterium
           Ellin514]
 gi|223891975|gb|EEF58457.1| signal recognition particle-docking protein FtsY [bacterium
           Ellin514]
          Length = 255

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 87/198 (43%), Positives = 127/198 (64%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V+ +VGVNG GKTT   K++  +   G   +LAA DTFR+AAI+QLK+W +R     +  
Sbjct: 53  VVSIVGVNGTGKTTTAAKMAHMIQQQGKISVLAACDTFRAAAIEQLKLWGERLKVPVIAG 112

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              +D AA+A++A   + A++ D LI+DTAGRLH    LM  + K+ RV+ +    APH 
Sbjct: 113 ADKADPAAIAHDAITASLARRADYLIVDTAGRLHTKHNLMQELQKLHRVMGKQLAGAPHE 172

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL VLDATTG NAL Q   FH     TGL++TK+DGT++GG ++ I     +P+ F+G+G
Sbjct: 173 VLLVLDATTGMNALNQAREFHKAVPLTGLVVTKLDGTSKGGMVVAIQKELGLPIKFVGLG 232

Query: 293 EGINDLEPFVAKDFSAVI 310
           E  +DL+PF A+ ++  +
Sbjct: 233 EQPDDLQPFDARQYAQAL 250


>gi|296453395|ref|YP_003660538.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296182826|gb|ADG99707.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 420

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/281 (39%), Positives = 172/281 (61%), Gaps = 13/281 (4%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93
           +I++  +L +   E++ED L+ +D+G   ++++VEEL   R    ++ Q    +V   + 
Sbjct: 139 NILAKDQLSEADWEDVEDTLLLADVGAEASEQLVEEL---RNDARIAGQSDPAEVRAALK 195

Query: 94  KMLMPL-----SKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             L+ L      +  N D   +++P V+++VGVNG GKTT  GKLS+ +   G +VML A
Sbjct: 196 DKLLKLVGTDIDRRLNADKDGANKPSVVIMVGVNGTGKTTTAGKLSRLLVSEGKQVMLGA 255

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
            DTFR+AA DQL+ W  +     V S+  G+D A++A+EA  +A+    DVLIIDTAGRL
Sbjct: 256 ADTFRAAAADQLETWGAKVGVPVVRSDKDGADPASVAFEASAKAKEANADVLIIDTAGRL 315

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N S LM  +GK+ RV ++  P     VL VLDATTGQN + Q ++F    G TG++++K
Sbjct: 316 QNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTGQNGMAQAKVFAEAIGITGVVLSK 373

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +DG+A+GG +I +     +PV  +G+GEG +DL PF  + F
Sbjct: 374 LDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFDPEGF 414


>gi|295099734|emb|CBK88823.1| signal recognition particle-docking protein FtsY [Eubacterium
           cylindroides T2-87]
          Length = 321

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/280 (38%), Positives = 155/280 (55%), Gaps = 5/280 (1%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMP 98
           ++D + EE+  +L+ SD+G+  AQKIV+    +  AKD+     + D  +S L       
Sbjct: 45  INDELLEEIMVILLESDVGIHTAQKIVDAF--EPNAKDLKNYDSMEDYLISILYDFYDEE 102

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
              P N++    P VIL+VGVNG GKTT   KL +        V + A DTFR+ AIDQ+
Sbjct: 103 QDAPINYN-EDGPTVILMVGVNGSGKTTTSAKLIRHYLQQQKSVAVVAADTFRAGAIDQI 161

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
             WA+R     +  +   D +++  +  + A+   VD+LI DTAGRL N + LM  + KM
Sbjct: 162 DTWANRLGVPCIKGKPNQDPSSVIVDGCRYAKEHNVDILICDTAGRLQNKTNLMNELSKM 221

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RV+ +     PH V  VLDATTGQN + Q ++F      +G+++TKMDGTA+GG ++ I
Sbjct: 222 RRVVSKEIEGGPHEVWLVLDATTGQNGISQAKIFLEATDVSGIVLTKMDGTAKGGVVLAI 281

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
                +PV FLG+GE   DL+ F    F   IT  +D  E
Sbjct: 282 RDLLHLPVRFLGLGEKPEDLKSFDINAFLMGITKGMDADE 321


>gi|71893367|ref|YP_278813.1| cell division protein ftsY [Mycoplasma hyopneumoniae J]
 gi|71851494|gb|AAZ44102.1| cell division protein ftsY [Mycoplasma hyopneumoniae J]
          Length = 333

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 98/267 (36%), Positives = 157/267 (58%), Gaps = 6/267 (2%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKM 95
           ++D+   EELE++LI SDI     + I++ L  +    +++    +  ++ D    I+  
Sbjct: 49  KIDENFFEELEEILIMSDISPNFVRTIIDSLKAEVRHHNLNNPDLIPEIIMDKMYTIYSN 108

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              ++   N     R +V L+ GVNG GKTT I K+++K    G KV++ A DTFR+AA+
Sbjct: 109 RSVVNTNLNIK-DGRINVFLISGVNGSGKTTSIAKVARKFIIEGKKVLIIAADTFRAAAV 167

Query: 156 DQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           +QL+IWA+R  A  +  E    D  ++ +     A  +K D+++IDTAGRL NN  LM  
Sbjct: 168 EQLEIWANRVGALILKPEANEKDPGSVVFRGLDFAIKEKTDLVLIDTAGRLQNNVNLMQE 227

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+ +++ +  P+APH  L V+DATTGQN + Q   F  +   +G+I+TKMDGT++GG 
Sbjct: 228 LKKINKIISQKVPNAPHESLLVIDATTGQNGVSQAANFAKITPVSGIILTKMDGTSKGGI 287

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +  I     I V  +G+GE ++DL+PF
Sbjct: 288 IFSIKDQLDISVKLVGLGEAMDDLQPF 314


>gi|88809353|ref|ZP_01124861.1| signal recognition particle docking protein FtsY [Synechococcus sp.
           WH 7805]
 gi|88786572|gb|EAR17731.1| signal recognition particle docking protein FtsY [Synechococcus sp.
           WH 7805]
          Length = 480

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 177/314 (56%), Gaps = 6/314 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V  E + W+ +L +G   T      G+ + +    L   V ++LE LL+R+D GV    
Sbjct: 166 QVTLEEIDWLGRLRQGLEKTRQGFVTGLLENLGDDPLTPEVLDDLESLLLRADAGVKATD 225

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVN 120
           ++++ L  +   + V     +  + E +  +L    K    +       + +V L+VGVN
Sbjct: 226 QVLDALRKRMNEQVVDPSEGIRFLKEQLRDLLDAPIKSSGVELLAPQRGQLNVWLMVGVN 285

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAA 179
           GVGKTT +GKL+     +G   M+AA DTFR+AA+ Q+++W DR+    V +    +D A
Sbjct: 286 GVGKTTTLGKLANLAVRSGYSAMIAAADTFRAAAVQQVQVWGDRSDVPVVANPSANADPA 345

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A++K  D++++DTAGRL     LM  + K+ RV+ RL P A    L VLDA
Sbjct: 346 AVVFDAIGAARSKSTDLVLVDTAGRLQTKHNLMEELNKIRRVVDRLAPDATVESLLVLDA 405

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN L+Q   F   AG TG+++TK+DGTARGG  + +     +P+ F+G GEGI DL 
Sbjct: 406 SQGQNGLKQAMAFARAAGLTGVVITKLDGTARGGVALAVASEAGLPIRFIGAGEGIRDLR 465

Query: 300 PFVAKDF-SAVITG 312
           PF + +F  A++ G
Sbjct: 466 PFNSFEFVEALLAG 479


>gi|54019977|ref|YP_115523.1| cell division protein ftsY [Mycoplasma hyopneumoniae 232]
 gi|72080350|ref|YP_287408.1| cell division protein ftsY [Mycoplasma hyopneumoniae 7448]
 gi|53987150|gb|AAV27351.1| cell division protein [Mycoplasma hyopneumoniae 232]
 gi|71913474|gb|AAZ53385.1| cell division protein ftsY [Mycoplasma hyopneumoniae 7448]
          Length = 333

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 98/267 (36%), Positives = 157/267 (58%), Gaps = 6/267 (2%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKM 95
           ++D+   EELE++LI SDI     + I++ L  +    +++    +  ++ D    I+  
Sbjct: 49  KIDENFFEELEEILIMSDISPNFVRTIIDSLKAEVRHHNLNNPDLIPEIIMDKMYTIYSN 108

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              ++   N     R +V L+ GVNG GKTT I K+++K    G KV++ A DTFR+AA+
Sbjct: 109 RSVVNTNLNIK-DGRINVFLISGVNGSGKTTSIAKVARKFIIEGKKVLIIAADTFRAAAV 167

Query: 156 DQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           +QL+IWA+R  A  +  E    D  ++ +     A  +K D+++IDTAGRL NN  LM  
Sbjct: 168 EQLEIWANRVGALILKPEANEKDPGSVVFRGLDFAIKEKTDLVLIDTAGRLQNNVNLMQE 227

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+ +++ +  P+APH  L V+DATTGQN + Q   F  +   +G+I+TKMDGT++GG 
Sbjct: 228 LKKINKIISQKVPNAPHESLLVIDATTGQNGVSQAANFAKITPVSGIILTKMDGTSKGGI 287

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +  I     I V  +G+GE ++DL+PF
Sbjct: 288 IFSIKDQLDISVKLVGLGEAMDDLQPF 314


>gi|29840542|ref|NP_829648.1| signal recognition particle-docking protein FtsY [Chlamydophila
           caviae GPIC]
 gi|29834891|gb|AAP05526.1| signal recognition particle-docking protein FtsY [Chlamydophila
           caviae GPIC]
          Length = 285

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/273 (34%), Positives = 146/273 (53%), Gaps = 14/273 (5%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-----VSELIH 93
           + L   + E  E L   +D G  + +++   L   R   + +V+ ++       ++ L H
Sbjct: 15  KSLSTDLLEFTESLFYEADFGSDLTEELCSRLRKCRKPDESTVKDLVLSLLRETIANLPH 74

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             L     P          V L++G NG GKTT + KL+        KVM+ A DTFRSA
Sbjct: 75  TELPQTEGPI---------VSLMLGTNGSGKTTTVAKLAHHYQSQSKKVMIVATDTFRSA 125

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
            +DQ++ WA++    FV  + G D AA+AY+    A ++  D ++IDT+GRLH ++ L+ 
Sbjct: 126 GMDQMRCWAEKLGCGFVAGKPGGDPAAIAYDGIASAISRGYDRVLIDTSGRLHTHTNLLN 185

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K++ V  ++ P +PH  L  +DAT G N + QV +FH     +GLI+TK+DG+A+GG
Sbjct: 186 ELSKIVSVCNKVHPGSPHERLMTIDATLGSNVIEQVRVFHDTIPLSGLILTKVDGSAKGG 245

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            L  +    KIP  F+G GE I DLE F    F
Sbjct: 246 TLFRVAKQLKIPTKFVGYGELIGDLEEFQIDRF 278


>gi|157164288|ref|YP_001466926.1| signal recognition particle-docking protein FtsY [Campylobacter
           concisus 13826]
 gi|112799965|gb|EAT97309.1| signal recognition particle-docking protein FtsY [Campylobacter
           concisus 13826]
          Length = 288

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 164/290 (56%), Gaps = 16/290 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L +GF  T       I+    S+++D   +E LE++L+ +D+   + ++I+  L  +   
Sbjct: 5   LKRGFEKTF----GAISSAKKSKKID---KESLEEILLEADVAYEIVEEILYYLPPQDEV 57

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
               ++RV+       ++ ++   KPF         V L++GVNG GKTT I KL+    
Sbjct: 58  SRADLRRVMSSYFIYENERVIEPDKPF---------VDLILGVNGAGKTTTIAKLANLYK 108

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           + G  V+L A DTFR+ AI+QL+ W+ R +   V ++ G D +A+AY+    A AK +D 
Sbjct: 109 NNGKSVILGACDTFRAGAIEQLRQWSIRLNVPIVATQQGHDPSAVAYDTISSALAKGIDR 168

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +I+DTAGRL N + L   + K++R+ K+    APH  + +LD T G   + Q + F+ + 
Sbjct: 169 VILDTAGRLQNQTNLANELDKIVRISKKAYEKAPHRKILILDGTQGNAGVAQAKAFNEIV 228

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              G+I+TK+DGTA+GG L  +    ++P++++GVGE ++D+  F   +F
Sbjct: 229 SLDGVIITKLDGTAKGGALFGVARELELPIFYIGVGESMDDIIKFNPDEF 278


>gi|57238078|ref|YP_179327.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni RM1221]
 gi|86152890|ref|ZP_01071095.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|121613201|ref|YP_001000881.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167005791|ref|ZP_02271549.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|57166882|gb|AAW35661.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni RM1221]
 gi|85843775|gb|EAQ60985.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|87249299|gb|EAQ72260.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|315058638|gb|ADT72967.1| Signal recognition particle receptor protein FtsY [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 288

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 93/258 (36%), Positives = 148/258 (57%), Gaps = 10/258 (3%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           LE++L+ +D+   + ++I+  L  +   K   ++RV+           +   K  N    
Sbjct: 31  LEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVM-------GSYFLYEKKETN---Q 80

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P V L++GVNG GKTT I KL+    +   KV+L A DTFR+ AI+QLK+WA +   D
Sbjct: 81  EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVD 140

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V +  G D +A+A++   +A+AK  D +IIDTAGRL N   L   + K++R+  +    
Sbjct: 141 IVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEG 200

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH  + VLD T G   + Q + F+ +    G+I+TK+DGTA+GG L  I    ++P+++
Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFY 260

Query: 289 LGVGEGINDLEPFVAKDF 306
           +GVGE + DL+ F A  +
Sbjct: 261 VGVGEQMTDLQEFNANAY 278


>gi|15618880|ref|NP_225166.1| cell division protein FtsY [Chlamydophila pneumoniae CWL029]
 gi|15836504|ref|NP_301028.1| cell division protein ftsY [Chlamydophila pneumoniae J138]
 gi|16752059|ref|NP_445425.1| signal recognition particle protein FtsY [Chlamydophila pneumoniae
           AR39]
 gi|4377298|gb|AAD19109.1| Cell Division Protein FtsY [Chlamydophila pneumoniae CWL029]
 gi|7189800|gb|AAF38675.1| signal recognition particle protein FtsY [Chlamydophila pneumoniae
           AR39]
 gi|8979345|dbj|BAA99179.1| cell division protein ftsY [Chlamydophila pneumoniae J138]
 gi|269302762|gb|ACZ32862.1| signal recognition particle-docking protein FtsY [Chlamydophila
           pneumoniae LPCoLN]
          Length = 290

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 142/255 (55%), Gaps = 3/255 (1%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E+ E L   +D G  + +++   L   + A   +++ +   ++ L+ + L  L    +  
Sbjct: 23  EDAESLFYEADFGTELTEELCARLRRTKKADASTIKDL---ITVLLRESLEGLPSQASQS 79

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              RP V L++G NG GKTT   KL+    +    VML A DTFR+A +DQ ++WA+   
Sbjct: 80  SQTRPIVSLLLGTNGSGKTTTAAKLAHYYKERSESVMLVATDTFRAAGMDQARLWANELG 139

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             FV  + G DAAA+A++  + A A+    +IIDT+GRLH +  LM  + K++ V  +  
Sbjct: 140 CGFVSGQPGGDAAAIAFDGIQSAIARGYSRVIIDTSGRLHVHGNLMKELSKIVSVCGKAL 199

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             APH +   +D+T G NA+ QV +FH V   +GLI TK+DG+A+GG L  I    KIP 
Sbjct: 200 EGAPHEIFMTVDSTLGNNAIEQVRVFHDVVPLSGLIFTKVDGSAKGGTLFQIAKRLKIPT 259

Query: 287 YFLGVGEGINDLEPF 301
            F+G GE + DL  F
Sbjct: 260 KFIGYGESLKDLNEF 274


>gi|25019706|gb|AAN71792.1| FtsY [Synechococcus elongatus PCC 7942]
          Length = 518

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 174/308 (56%), Gaps = 5/308 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++++ E + W+  L +G   T   L   +   +    L     E +E LL+++D+GV   
Sbjct: 204 EEISIEEIDWLSSLRRGLDKTRRSLVNQLKSAVGQGPLSADAVETIEALLLQADVGVEAT 263

Query: 64  QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGV 119
            +I+ +L  K R       Q + Y    L   +  PL     +  +    R +V LV GV
Sbjct: 264 DRILTQLQAKLRQEALPPEQAIAYLKQLLQQLLDQPLETSGRYILAPEKGRLNVWLVCGV 323

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NGVGKTT IGKL+   + +G + ++AA DTFR+AA++Q+K+W DR+  D + +    +D 
Sbjct: 324 NGVGKTTTIGKLAHLATKSGYRCLIAAADTFRAAAVEQVKVWGDRSEVDVIANPGQNTDP 383

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQA+  ++L++DTAGRL N   LM  + K+ R++ R  P A    L VLD
Sbjct: 384 AAVVFDAIAAAQARGTELLLVDTAGRLQNKKNLMDELAKVRRIIDRKAPDAIVESLLVLD 443

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN LRQ ++F   A  +G+ +TK+D TA+GG  + I    ++P+ FLG GE I DL
Sbjct: 444 ATQGQNGLRQAQVFAEAAQLSGVALTKLDSTAKGGVALAIAQDLQLPIRFLGAGERIQDL 503

Query: 299 EPFVAKDF 306
            PF + +F
Sbjct: 504 RPFSSYEF 511


>gi|85057344|ref|YP_456260.1| signal recognition particle, docking protein FtsY [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|84789449|gb|ABC65181.1| signal recognition particle, docking protein FtsY [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 356

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 128/202 (63%), Gaps = 6/202 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P + L  GVNGVGKTT IGK+++ +   G KV+L A DTFR+ A+ QL+IWA R   
Sbjct: 143 NNFPQMYLFTGVNGVGKTTTIGKMAEALKQEGKKVLLIAADTFRAGAVAQLQIWAKRVGV 202

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           +  C  + +  A++ +E  + A+++  D+++ DTAGRL N + LM  + K+ RV+ +   
Sbjct: 203 EVFCKPLPAHPASVIFEGIELAKSQNYDIILCDTAGRLQNKTNLMQELAKINRVIYK--- 259

Query: 228 HAPHSVLQ---VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           H P S LQ   VLDATTGQNAL QV++F+     +G I+TK+DGT++GG +  I   + +
Sbjct: 260 HLPASNLQTFLVLDATTGQNALNQVDLFNQATPLSGAILTKLDGTSKGGIVFAIKYLYNL 319

Query: 285 PVYFLGVGEGINDLEPFVAKDF 306
           P  ++GVGE   DL  F  K +
Sbjct: 320 PTKYIGVGEKAQDLITFDVKKY 341


>gi|56751641|ref|YP_172342.1| signal recognition particle subunit SRP54 [Synechococcus elongatus
           PCC 6301]
 gi|81301281|ref|YP_401489.1| signal recognition particle-docking protein FtsY [Synechococcus
           elongatus PCC 7942]
 gi|56686600|dbj|BAD79822.1| signal recognition particle subunit SRP54 [Synechococcus elongatus
           PCC 6301]
 gi|81170162|gb|ABB58502.1| signal recognition particle-docking protein FtsY [Synechococcus
           elongatus PCC 7942]
          Length = 518

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 174/308 (56%), Gaps = 5/308 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++++ E + W+  L +G   T   L   +   +    L     E +E LL+++D+GV   
Sbjct: 204 EEISIEEIDWLSSLRRGLDKTRRSLVNQLKSAVGQGPLSADAVETIEALLLQADVGVEAT 263

Query: 64  QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGV 119
            +I+ +L  K R       Q + Y    L   +  PL     +  +    R +V LV GV
Sbjct: 264 DRILTQLQAKLRQEALPPEQAIAYLKQLLQQLLDQPLETSGRYILAPEKGRLNVWLVCGV 323

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NGVGKTT IGKL+   + +G + ++AA DTFR+AA++Q+K+W DR+  D + +    +D 
Sbjct: 324 NGVGKTTTIGKLAHLATKSGYRCLIAAADTFRAAAVEQVKVWGDRSEVDVIANPGQNTDP 383

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQA+  ++L++DTAGRL N   LM  + K+ R++ R  P A    L VLD
Sbjct: 384 AAVVFDAIAAAQARGTELLLVDTAGRLQNKKNLMDELAKVRRIIDRKAPDAIVESLLVLD 443

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN LRQ ++F   A  +G+ +TK+D TA+GG  + I    ++P+ FLG GE I DL
Sbjct: 444 ATQGQNGLRQAQVFAEAAQLSGVALTKLDSTAKGGVALAIAQDLQLPIRFLGAGERIQDL 503

Query: 299 EPFVAKDF 306
            PF + +F
Sbjct: 504 RPFSSYEF 511


>gi|78183595|ref|YP_376029.1| cell division transporter substrate-binding protein FtsY
           [Synechococcus sp. CC9902]
 gi|78167889|gb|ABB24986.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           CC9902]
          Length = 522

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 177/314 (56%), Gaps = 14/314 (4%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E + W+ +L +G   T      G+ + +    L   V +ELE LL+R+D GV    +++E
Sbjct: 212 EEIDWLGRLRRGLEKTRQGFVTGLLENLGDDPLTPEVLDELETLLLRADAGVQATDQVLE 271

Query: 69  EL---LTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            L   + +     V   R L D     +   I    +PL  P       R ++ L+VGVN
Sbjct: 272 ALRQRMNEEVVDPVEGIRFLKDQLRGLLDAPIKASGVPLLAPER----GRLNIWLMVGVN 327

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAA 179
           GVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W +R+    + +    +D A
Sbjct: 328 GVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVEVWGERSDVPVISNPSSNADPA 387

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A++++ D+L++DTAGRL     LM  + K+ +++ RL P A    L VLDA
Sbjct: 388 AVVFDAIGAARSRETDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEANVESLLVLDA 447

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN LRQ   F   AG TG+++TK+DGTARGG  + +     +P+ F+G GEGI DL 
Sbjct: 448 SQGQNGLRQAMAFAKAAGLTGVVVTKLDGTARGGVALAVSSEAGLPIRFIGAGEGIRDLR 507

Query: 300 PFVAKDF-SAVITG 312
           PF + +F  A++ G
Sbjct: 508 PFNSFEFVEALLAG 521


>gi|255322936|ref|ZP_05364074.1| signal recognition particle-docking protein FtsY [Campylobacter
           showae RM3277]
 gi|255299998|gb|EET79277.1| signal recognition particle-docking protein FtsY [Campylobacter
           showae RM3277]
          Length = 289

 Score =  172 bits (435), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 157/280 (56%), Gaps = 10/280 (3%)

Query: 28  LKEGITDIISSRRLDDGVREE-LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
           L + +  I SS+  D  + +E LE++L+ +DI   + ++++  L  +   K   ++R+L 
Sbjct: 9   LDKTLAAIRSSKPADKKISKEILEEILLEADIAYEIVEEVLYYLPPQNEVKKDDLKRLLN 68

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
                 ++    + KPF         V L++GVNG GKTT I KL+    + G  V+L A
Sbjct: 69  TYFIYENEREAKVGKPF---------VELILGVNGAGKTTTIAKLANLYKNEGKSVILGA 119

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ AI+QL+ WA RT    V ++ G D +A+A++    A AK +D +I+DTAGRL 
Sbjct: 120 CDTFRAGAIEQLRQWAIRTDVTIVATQQGHDPSAVAFDTISSAVAKNLDNVILDTAGRLQ 179

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
           N + L   + K++R+  R    APH  + +LD T G   L Q + F+ +    G+I+TK+
Sbjct: 180 NQTNLANELSKIVRIADRAYAGAPHRKILILDGTQGNAGLAQAKAFNDIVSLDGVIITKL 239

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           DGT +GG L  +    ++P+ ++G GE +NDL  F   DF
Sbjct: 240 DGTPKGGALFGVARELELPILYIGTGETMNDLVKFDPHDF 279


>gi|119025129|ref|YP_908974.1| FtsY signal recognition particle [Bifidobacterium adolescentis ATCC
           15703]
 gi|118764713|dbj|BAF38892.1| FtsY signal recognition particle [Bifidobacterium adolescentis ATCC
           15703]
          Length = 420

 Score =  172 bits (435), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 111/281 (39%), Positives = 172/281 (61%), Gaps = 13/281 (4%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93
           +I++  +L +   E++ED L+ +D+G   ++++VEEL   R    ++ Q    +V   + 
Sbjct: 139 NILAKDQLSEADWEDVEDTLLLADVGAEASEQLVEEL---RNDARIAGQSDPAEVRAALK 195

Query: 94  KMLMPLSKP-------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             L+ L           N + +++P VI++VGVNG GKTT  GKLS+ +   G +VML A
Sbjct: 196 DKLLKLVGTDTDRRLNANKEGANKPSVIIMVGVNGTGKTTTAGKLSRLLVSEGKQVMLGA 255

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
            DTFR+AA DQL+ W  +     V S+  G+D A++A+EA  +A+ +  DVLIIDTAGRL
Sbjct: 256 ADTFRAAAADQLETWGAKVGVPVVRSDKDGADPASVAFEASAKAKEENADVLIIDTAGRL 315

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N + LM  +GK+ RV ++  P     VL VLDATTGQN + Q ++F    G TG++++K
Sbjct: 316 QNKANLMDELGKIRRVTEKNLPV--DEVLLVLDATTGQNGMTQAKVFAEAIGITGVVLSK 373

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +DG+A+GG +I +     +PV  +G+GEG +DL PF  + F
Sbjct: 374 LDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFDPEGF 414


>gi|260435905|ref|ZP_05789875.1| cell division protein FtsY [Synechococcus sp. WH 8109]
 gi|260413779|gb|EEX07075.1| cell division protein FtsY [Synechococcus sp. WH 8109]
          Length = 504

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 180/318 (56%), Gaps = 14/318 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V+ E + W+ +L +G   T       + + +    L   V ++LE LL+R+D GV    
Sbjct: 190 QVSLEEIDWLGRLRRGLEKTRQGFVTSLLENLGDDPLTPEVLDDLETLLLRADAGVQATD 249

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKML--------MPLSKPFNWDFSHRPHVILV 116
           ++++ L  +   + V     +  + E +  +L        +PL  P       R ++ L+
Sbjct: 250 QVLDALRQRMNEEVVDPAEGIRFLKEQLRGLLDAPIQASGVPLLAPER----DRLNIWLM 305

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIG 175
           VGVNGVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W +R+    V +    
Sbjct: 306 VGVNGVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVEVWGERSDVPVVSNPSSN 365

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D AA+ ++A   A+++K D+L++DTAGRL     LM  + K+ +++ RL P A    L 
Sbjct: 366 ADPAAVVFDAIGAARSRKSDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEAKVESLL 425

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDA+ GQN LRQ   F   AG TG+++TK+DGTARGG  + +     +P+ F+G GEGI
Sbjct: 426 VLDASQGQNGLRQAMAFAQAAGLTGVVITKLDGTARGGVALAVSSEAGLPIRFIGAGEGI 485

Query: 296 NDLEPFVAKDF-SAVITG 312
            DL PF + +F  A++ G
Sbjct: 486 RDLRPFNSFEFVEALLAG 503


>gi|78211569|ref|YP_380348.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           CC9605]
 gi|78196028|gb|ABB33793.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           CC9605]
          Length = 512

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 180/318 (56%), Gaps = 14/318 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V+ E + W+ +L +G   T       + + +    L   V ++LE LL+R+D GV    
Sbjct: 198 QVSLEEIDWLGRLRRGLEKTRQGFVTSLLENLGDDPLTPEVLDDLETLLLRADAGVQATD 257

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKML--------MPLSKPFNWDFSHRPHVILV 116
           ++++ L  +   + V     +  + E +  +L        +PL  P       R ++ L+
Sbjct: 258 QVLDALRQRMNEEVVDPAEGIRFLKEQLRGLLDAPIQASGVPLLAPER----DRLNIWLM 313

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIG 175
           VGVNGVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W +R+    V +    
Sbjct: 314 VGVNGVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVEVWGERSDVPVVSNPSSN 373

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D AA+ ++A   A+++K D+L++DTAGRL     LM  + K+ +++ RL P A    L 
Sbjct: 374 ADPAAVVFDAIGAARSRKSDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEAKVESLL 433

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDA+ GQN LRQ   F   AG TG+++TK+DGTARGG  + +     +P+ F+G GEGI
Sbjct: 434 VLDASQGQNGLRQAMAFAQAAGLTGVVITKLDGTARGGVALAVSSEAGLPIRFIGAGEGI 493

Query: 296 NDLEPFVAKDF-SAVITG 312
            DL PF + +F  A++ G
Sbjct: 494 RDLRPFNSFEFVEALLAG 511


>gi|72383174|ref|YP_292529.1| signal recognition particle-docking protein FtsY [Prochlorococcus
           marinus str. NATL2A]
 gi|72003024|gb|AAZ58826.1| signal recognition particle-docking protein FtsY [Prochlorococcus
           marinus str. NATL2A]
          Length = 431

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 174/303 (57%), Gaps = 5/303 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           + + W+ +L +G   T       + + +    L   V ++LE LL+R+D GV+   +I+E
Sbjct: 121 DDIDWLSRLKQGLEKTRKGFVTDLLEKLGDDPLTPEVLDDLETLLLRADAGVSATDQILE 180

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP----HVILVVGVNGVGK 124
            L TK   + V     L  + E +  +L    K    D         ++ ++VGVNGVGK
Sbjct: 181 SLRTKLNEEVVEASEGLRFLKEQLVNVLEKPIKDSGADLLSPQKGCLNIWMLVGVNGVGK 240

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183
           TT +GKL+     +G   M+AA DTFR+AA+ Q+K+W DRT  + + +E   +D A++ +
Sbjct: 241 TTTLGKLASVAKRSGFSAMIAAADTFRAAAVQQVKVWGDRTGVEVIANESKNADPASIVF 300

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   +++K +D+L++DTAGRL   + LM  + K+ +++ +L P A    L VLD++ GQ
Sbjct: 301 DAIGASKSKNIDLLLVDTAGRLQTKNNLMEELKKIRKIIDKLAPKANVESLLVLDSSQGQ 360

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N LRQ   F   A  TG+I+TK+DG+++GG  + +    K+PV F+G GE I DL PF +
Sbjct: 361 NGLRQALAFADSAELTGVILTKLDGSSKGGVAMAVASEAKLPVRFIGAGEKIRDLRPFNS 420

Query: 304 KDF 306
            +F
Sbjct: 421 FEF 423


>gi|218562818|ref|YP_002344597.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|112360524|emb|CAL35321.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|315927266|gb|EFV06611.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni DFVF1099]
          Length = 288

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/267 (35%), Positives = 152/267 (56%), Gaps = 13/267 (4%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           LE++L+ +D+   + ++I+  L  +   K   ++RV+           +   K  N +  
Sbjct: 31  LEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVM-------GSYFLYEKKETNQE-- 81

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P V L++GVNG GKTT I KL+    +   KV+L A DTFR+ AI+QLK+WA +   D
Sbjct: 82  -KPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVD 140

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V +  G D +A+ ++   +A+AK  D +IIDTAGRL N   L   + K++R+  +    
Sbjct: 141 IVLTAQGHDPSAVTFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEG 200

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH  + VLD T G   + Q + F+ +    G+I+TK+DGTA+GG L  I    ++P+++
Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFY 260

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE + DL+ F A   SA +   LD
Sbjct: 261 VGVGEQMTDLQEFNA---SAYLDTLLD 284


>gi|124024722|ref|YP_001013838.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. NATL1A]
 gi|123959790|gb|ABM74573.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. NATL1A]
          Length = 431

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 174/303 (57%), Gaps = 5/303 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           + + W+ +L +G   T       + + +    L   V ++LE LL+R+D GV+   +I+E
Sbjct: 121 DDIDWLSRLKQGLEKTRKGFVTDLLEKLGDDPLTPEVLDDLETLLLRADAGVSATDQILE 180

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP----HVILVVGVNGVGK 124
            L TK   + V     L  + E +  +L    K    D         ++ ++VGVNGVGK
Sbjct: 181 SLRTKLNEEVVEASEGLRFLKEQLVNVLEKPIKDSGADLLSPQKGCLNIWMLVGVNGVGK 240

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183
           TT +GKL+     +G   M+AA DTFR+AA+ Q+K+W DRT  + + +E   +D A++ +
Sbjct: 241 TTTLGKLASVAKRSGFSAMIAAADTFRAAAVQQVKVWGDRTGVEVIANESKNADPASIVF 300

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   +++K +D+L++DTAGRL   + LM  + K+ +++ +L P A    L VLD++ GQ
Sbjct: 301 DAIGASKSKNIDLLLVDTAGRLQTKNNLMEELKKIRKIIDKLAPKANVESLLVLDSSQGQ 360

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N LRQ   F   A  TG+I+TK+DG+++GG  + +    K+PV F+G GE I DL PF +
Sbjct: 361 NGLRQALAFADSAELTGVILTKLDGSSKGGVAMAVASEAKLPVRFIGAGEKIRDLRPFNS 420

Query: 304 KDF 306
            +F
Sbjct: 421 FEF 423


>gi|297243129|ref|ZP_06927067.1| signal recognition particle GTPase [Gardnerella vaginalis AMD]
 gi|296889340|gb|EFH28074.1| signal recognition particle GTPase [Gardnerella vaginalis AMD]
          Length = 393

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/319 (38%), Positives = 187/319 (58%), Gaps = 18/319 (5%)

Query: 1   MSNQKVASESL-----SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR 55
           M N++V SE L     S I++L +  A ++      + +IIS   L +   E++ED L+ 
Sbjct: 74  MPNEEVKSELLPESTSSRIKRLRERLAHSANPFGRALFNIISKDHLSEEDWEDVEDTLLM 133

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFS-- 108
           +D+G   ++++VE+L   R    ++      DV   +   L+ +      +  N D S  
Sbjct: 134 ADVGSRASEELVEDL---RKDARIAGTSSSEDVHSALRTKLLKIVDEDADRRLNADKSDA 190

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           H P VI++VGVNG GKTT  GKL++        VM AA DTFR+AA DQL+ WA   S  
Sbjct: 191 HHPSVIMMVGVNGTGKTTTAGKLARLFIAQKRSVMFAAADTFRAAAADQLETWASAVSVP 250

Query: 169 FV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
            V   + G+D A++A+ A  +A+ ++ D+LI+DTAGRL N + LM  +GK+ RV+++  P
Sbjct: 251 VVRADKDGADPASVAFIAANKAKEEQTDLLIVDTAGRLQNKANLMEELGKIRRVIEKTMP 310

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
                VL VLDATTGQN + Q ++F    G TG+++TK+DG+A+GG +I +     +PV 
Sbjct: 311 --VDEVLLVLDATTGQNGMSQAKVFAEAIGITGVVLTKLDGSAKGGIVIAVQRELGVPVK 368

Query: 288 FLGVGEGINDLEPFVAKDF 306
            +G+GEG +DL PF A+ F
Sbjct: 369 LVGLGEGPDDLVPFDAQSF 387


>gi|321309549|ref|YP_004191878.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Mycoplasma haemofelis str. Langford 1]
 gi|319801393|emb|CBY92039.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Mycoplasma haemofelis str. Langford 1]
          Length = 320

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/208 (43%), Positives = 127/208 (61%), Gaps = 6/208 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           R +++LVVG NGVGKTT I KL+    +   KV+L AGDTFR+ A++QL IWA++ + D 
Sbjct: 113 RRNIVLVVGSNGVGKTTSIAKLANYFKNEDFKVLLVAGDTFRAGAVEQLNIWAEKLNIDI 172

Query: 170 VC-SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           V  S    D +AL Y A   ++    D++I DT+GR HNN  L+  + K+ R +K+ DP 
Sbjct: 173 VNPSRAMEDPSALIYRAL--SEYTDYDLVICDTSGRQHNNKNLLQELNKVHRTIKKFDPS 230

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           +PH  L VLD+T GQ++L Q + F   +  +G+++TKMD   RGG +  I     IPV F
Sbjct: 231 SPHESLLVLDSTIGQSSLLQAQQFLDNSEISGIVLTKMDSLTRGGIIFSIREKFGIPVKF 290

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLDY 316
           LG GE I+DL  F   D   VI+   D+
Sbjct: 291 LGTGESIDDLYIF---DLEEVISSWFDH 315


>gi|126695347|ref|YP_001090233.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9301]
 gi|126542390|gb|ABO16632.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9301]
          Length = 439

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/315 (34%), Positives = 180/315 (57%), Gaps = 21/315 (6%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ + + W+ KL +G   T       + D +    L     ++LE LLIR+D+G+    
Sbjct: 125 QISIDEIDWLTKLRRGLEETRKGFVTELLDKLGDDPLTPEALDDLETLLIRADVGIDSTD 184

Query: 65  KIVEELLTKRYAK----DVSVQRVLYDVSELIHK--------MLMPLSKPFNWDFSHRPH 112
           K++  L TK   +    +  ++ +  ++  +I K        +L+P     N        
Sbjct: 185 KVISSLRTKLNEEVLGAEAGIKFLKKELKLIIDKPIKSSGTDLLVPQKGKLN-------- 236

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V L+VGVNGVGKTT +GKL+   S +  K ++AA DTFR+AA++QLK+W DR++ + + +
Sbjct: 237 VWLLVGVNGVGKTTTLGKLAYLSSKSNYKTLIAAADTFRAAAVEQLKVWGDRSNVEVISN 296

Query: 173 EI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +   +D AA+ ++A   A+ + VD+L++DTAGRL   + LM  + K+ +++ R  P A  
Sbjct: 297 QSKNADPAAVVFDAINSAKKRNVDLLLVDTAGRLQTKNNLMDELAKIKKIIDRKVPDAIV 356

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L VLDA+ GQN L+Q + F   A  +G I+TK+DGT+RGG  + +     +P+ F+G 
Sbjct: 357 ESLLVLDASQGQNGLKQAKSFAKSADLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIGA 416

Query: 292 GEGINDLEPFVAKDF 306
           GEGI DL PF + +F
Sbjct: 417 GEGIKDLRPFNSYEF 431


>gi|145593846|ref|YP_001158143.1| signal recognition particle-docking protein FtsY [Salinispora
           tropica CNB-440]
 gi|145303183|gb|ABP53765.1| signal recognition particle-docking protein FtsY [Salinispora
           tropica CNB-440]
          Length = 411

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/295 (38%), Positives = 172/295 (58%), Gaps = 9/295 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY---AKDVSVQRVLY 86
           +G+  ++S  RLD+   EE+ED LI +D+G+   ++IV+ L  +      + V+  R L 
Sbjct: 120 KGLLGLLSRDRLDEETWEEIEDSLITADVGIDSTREIVDRLRERTRVLGTRTVAELRALL 179

Query: 87  DVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
             +EL++ +   L +  +       P V+LVVGVNG GKTT  GK+++ +   G  V+L 
Sbjct: 180 -AAELVNALDPELDRALHTAPKDGMPAVLLVVGVNGAGKTTTCGKVARVLVADGRSVILG 238

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR+AA DQL+ WA R  A+ V    G+D A++A++A K+     VD +++DTAGRL
Sbjct: 239 AADTFRAAAADQLETWAGRVGAETVRGPEGADPASVAFDAVKRGIETGVDTVLVDTAGRL 298

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
            N   LM  +GK+ RV+++   H P    L +LDATTGQN L Q  +F      TG+ +T
Sbjct: 299 QNKIGLMDELGKVKRVVEK---HGPIDETLLILDATTGQNGLEQARVFTEAVDVTGVALT 355

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319
           K+DGTA+GG +I +     IPV  +G+GEG +DL PF    F   + G    G +
Sbjct: 356 KLDGTAKGGIVISVQRKLGIPVKLVGLGEGKDDLAPFDPAQFVDALLGAEATGSD 410


>gi|116074286|ref|ZP_01471548.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           RS9916]
 gi|116069591|gb|EAU75343.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           RS9916]
          Length = 550

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 177/317 (55%), Gaps = 12/317 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V+ E + W+ +L +G   T      G+ D +    L   V ++LE LL+R+D GV    
Sbjct: 236 QVSLEEIDWLSRLRQGLEKTRQGFVTGLLDNLGDDPLTPEVVDDLEALLLRADAGVVATD 295

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-------FSHRPHVILVV 117
           +++E L  +   + V     +  + E +  +L    +P              R ++ L+V
Sbjct: 296 QVMEALRQRLNEEVVDPSEGIRFLKEQLRNLL---EQPIQASGVELLAPERDRLNIWLMV 352

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-S 176
           GVNGVGKTT +GKL+     +G   M+AA DTFR+AA+ Q+++W +R+    V +    +
Sbjct: 353 GVNGVGKTTTLGKLANLAVRSGYSAMIAAADTFRAAAVQQVEVWGERSDVPVVANPTANA 412

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A   A++K  D+L++DTAGRL     LM  + K+ R++ RL P +    L V
Sbjct: 413 DPAAVVFDAIGAARSKGTDLLLVDTAGRLQTKHNLMEELQKIRRIVDRLAPESKVESLLV 472

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA+ GQN L+Q   F   A  TG+++TK+DGTARGG  + +     +P+ F+G GEGI 
Sbjct: 473 LDASQGQNGLKQAMAFAKAADLTGVVITKLDGTARGGVALAVSSEAGLPIRFIGAGEGIR 532

Query: 297 DLEPFVAKDF-SAVITG 312
           DL PF + +F  A++ G
Sbjct: 533 DLRPFNSFEFVEALLAG 549


>gi|289704692|ref|ZP_06501118.1| signal recognition particle-docking protein FtsY [Micrococcus
           luteus SK58]
 gi|289558584|gb|EFD51849.1| signal recognition particle-docking protein FtsY [Micrococcus
           luteus SK58]
          Length = 399

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/285 (40%), Positives = 172/285 (60%), Gaps = 16/285 (5%)

Query: 31  GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ--RVLYDV 88
           G+  ++S  R+DD V +E+E+ L+ +D+G     ++V+ L  +     V+V+  R    V
Sbjct: 115 GLLALLSQDRIDDDVWDEIEETLLMADLGTEPTLELVDRLKAR-----VTVEGTRDPEQV 169

Query: 89  SELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
             L+ + L+ +  P             RP V +VVGVNGVGKTT +GKL++ +      V
Sbjct: 170 RTLLREELVAMVDPSMDRRLAATRRGERPAVTMVVGVNGVGKTTTVGKLARVLVAEDRTV 229

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDT 201
           +L A DTFR+AA +QL  W  R   + V SE  G+D A++A+EA +   A+ VDV+++DT
Sbjct: 230 VLGAADTFRAAAAEQLATWGARVGVETVRSEKEGADPASVAFEAVEHGIAEGVDVVLVDT 289

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL N + LM  +GK+ RV+++        VL VLDATTGQN L Q ++F  V   TG+
Sbjct: 290 AGRLQNKANLMDELGKIKRVIEKQ--AEVDEVLLVLDATTGQNGLTQAKVFAEVVDVTGI 347

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++TK+DGTA+GG +I I     +PV  +G+GEG +DL PF A+ F
Sbjct: 348 VLTKLDGTAKGGIVIAIQRQLGVPVKLIGLGEGPDDLAPFTAEGF 392


>gi|197294840|ref|YP_001799381.1| Signal recognition particle-docking protein [Candidatus Phytoplasma
           australiense]
 gi|171854167|emb|CAM12161.1| Signal recognition particle-docking protein [Candidatus Phytoplasma
           australiense]
          Length = 331

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 164/301 (54%), Gaps = 17/301 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           G A T        T +  ++ +++ +   LE++LI SD GV     +++ +  K Y    
Sbjct: 21  GLAKTKGNFVNFETLLKEAKNIEESLLSALENILIESDFGVKTTLFLMQSI--KNYLNQS 78

Query: 80  SVQRVLYDVSELIHKML-----------MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +++      S +I  +L            P+    +      P + L VGVNGVGKTT I
Sbjct: 79  NIKEARQLPSIIIKHLLHLYQDSSKQSQTPILNTNSKTTLTDPQMYLFVGVNGVGKTTTI 138

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE--IGSDAAALAYEAF 186
           GK++ K+   G KV+L AGDTFR+ A++QLKIW + +  +    E  +    +++ +E  
Sbjct: 139 GKMATKLRQEGKKVLLVAGDTFRAGAVEQLKIWGNWSQTEVFAKEGTLFPSPSSVIFEGL 198

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV-LKRLDPHAPHSVLQVLDATTGQNA 245
           + A+    DV++ DTAGRL N + LM  + K+ RV LK L+P    S L VLDA TGQNA
Sbjct: 199 QYAKKNAYDVVLCDTAGRLQNKANLMQELAKIQRVILKHLNPENLQSFL-VLDANTGQNA 257

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QVE+F+     TG I+TK+DGT++GG +  I   + + + F+G+GE   DL  F  ++
Sbjct: 258 LNQVELFNEAVPLTGAIITKLDGTSKGGIVFAIKHLYNLSIKFIGLGEKPEDLVDFDIQN 317

Query: 306 F 306
           +
Sbjct: 318 Y 318


>gi|260907263|ref|ZP_05915585.1| signal recognition particle-docking protein FtsY [Brevibacterium
           linens BL2]
          Length = 380

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/310 (37%), Positives = 182/310 (58%), Gaps = 11/310 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V +E  + + +L +  A ++  L  G+  ++S   LD+   EE+ED LI +D+GV    
Sbjct: 68  EVPTEPANRLVRLRERLAKSNSGLGRGLLSLLSRDNLDESTWEEIEDTLILADVGVDPTT 127

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFS-----HRPHVILVVG 118
           ++V+ L   R    V   R   +V  L+ + L+ L  P  + + +       P V+LVVG
Sbjct: 128 ELVDRL---RERVKVLGTREPEEVRGLLREELIKLVDPTMDRELAVSGTGDDPAVMLVVG 184

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT +GK+++ +      V+L A DTFR+AA +QL  W  R   + V  E G+D 
Sbjct: 185 VNGAGKTTTVGKIARVLVAEDQTVLLGAADTFRAAAAEQLSTWGGRVGVETVRGEEGADP 244

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL--DPHAPHSVLQV 236
           A++AY A ++ +++  DV++IDTAGRL N   LM  +GK+ RV  R   + H    VL V
Sbjct: 245 ASVAYSAVERGKSENTDVVLIDTAGRLQNKIGLMDELGKVKRVATRPLGEGHEIDEVLLV 304

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN ++Q ++F      TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +
Sbjct: 305 LDATTGQNGMQQAKVFAEAVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGAD 364

Query: 297 DLEPFVAKDF 306
           DL PF A+ F
Sbjct: 365 DLAPFTAEGF 374


>gi|118473366|ref|YP_886764.1| signal recognition particle-docking protein FtsY [Mycobacterium
           smegmatis str. MC2 155]
 gi|118174653|gb|ABK75549.1| signal recognition particle-docking protein FtsY [Mycobacterium
           smegmatis str. MC2 155]
          Length = 491

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 162/266 (60%), Gaps = 11/266 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---- 102
           EE+ED L+ +D+G  V + ++  L T+  AK+V   R   D   ++ ++LM   +P    
Sbjct: 225 EEVEDTLLIADLGPVVTESVIGALRTEMAAKNV---RTEADARAVLREVLMAELRPELPR 281

Query: 103 --FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                  + +P V+LVVGVNG GKTT +GKL++ +   G +V+L A DTFR+AA DQL+ 
Sbjct: 282 SIRALPHADKPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQT 341

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           W  R  A+ V    G+D A++A++A     +   DV+++DTAGRLH  + LM  +GK+ R
Sbjct: 342 WGSRVGAEVVRGPEGADPASVAFDAVDHGISAGADVVVVDTAGRLHTKTGLMDELGKVKR 401

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V+++    A   VL VLDAT GQN+L Q ++F  V   TG+++TK+DGTA+GG +  +  
Sbjct: 402 VVEKR--AAVDEVLLVLDATIGQNSLPQAKVFAEVVDITGVVLTKLDGTAKGGIVFRVQQ 459

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDF 306
              +PV  +G+GEG +DL PF    F
Sbjct: 460 ELGVPVKLVGLGEGPDDLAPFEPGAF 485


>gi|193216479|ref|YP_001999721.1| cell division protein [Mycoplasma arthritidis 158L3-1]
 gi|193001802|gb|ACF07017.1| cell division protein [Mycoplasma arthritidis 158L3-1]
          Length = 351

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/276 (40%), Positives = 170/276 (61%), Gaps = 15/276 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------- 99
           E+LE++LI +DI   +   IV E   +   +++   ++   +SE+I   L  +       
Sbjct: 78  EDLEEILIMADISARLVTIIVNECKKEVRNENIEDPKL---ISEIIADKLFTIYASNSVV 134

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
               N + ++R +VILVVGVNG GKTT I KL+KK+S  G KV++AA DTFR+AA++QL+
Sbjct: 135 DTSLNIE-NNRINVILVVGVNGSGKTTSISKLAKKLSSEGKKVLIAAADTFRAAAVEQLE 193

Query: 160 IWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           IWA R   D +  ++  +D AA+ Y+A  +A+ +K DVL+IDTAGRL N   LM  + K+
Sbjct: 194 IWAKRVGVDIIKPTQNETDPAAVVYKAIDKAKEEKYDVLLIDTAGRLQNKVNLMQELAKI 253

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            +VL+     APH  L VLDATTGQN + Q ++F      TG+++TKMDGT+RGG ++ I
Sbjct: 254 NKVLESKIEGAPHESLLVLDATTGQNGIVQAKVFTQATPLTGIVLTKMDGTSRGGIILTI 313

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
                + V ++G+GE ++DL  F   D  + I G +
Sbjct: 314 KDEIGLNVKYVGLGEKVDDLMEF---DLDSYIYGLM 346


>gi|239917429|ref|YP_002956987.1| signal recognition particle-docking protein FtsY [Micrococcus
           luteus NCTC 2665]
 gi|281414081|ref|ZP_06245823.1| signal recognition particle-docking protein FtsY [Micrococcus
           luteus NCTC 2665]
 gi|239838636|gb|ACS30433.1| signal recognition particle-docking protein FtsY [Micrococcus
           luteus NCTC 2665]
          Length = 393

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/285 (40%), Positives = 172/285 (60%), Gaps = 16/285 (5%)

Query: 31  GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ--RVLYDV 88
           G+  ++S  R+DD V +E+E+ L+ +D+G     ++V+ L  +     V+V+  R    V
Sbjct: 109 GLLALLSQDRIDDDVWDEIEETLLMADLGTEPTLELVDRLKAR-----VTVEGTRDPEQV 163

Query: 89  SELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
             L+ + L+ +  P             RP V +VVGVNGVGKTT +GKL++ +      V
Sbjct: 164 RTLLREELVAMVDPSMDRRLAATRRGDRPAVTMVVGVNGVGKTTTVGKLARVLVAEDRTV 223

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDT 201
           +L A DTFR+AA +QL  W  R   + V SE  G+D A++A+EA +   A+ VDV+++DT
Sbjct: 224 VLGAADTFRAAAAEQLATWGARVGVETVRSEKEGADPASVAFEAVEHGIAEGVDVVLVDT 283

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL N + LM  +GK+ RV+++        VL VLDATTGQN L Q ++F  V   TG+
Sbjct: 284 AGRLQNKANLMDELGKIKRVIEKQ--AEVDEVLLVLDATTGQNGLTQAKVFAEVVDVTGI 341

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++TK+DGTA+GG +I I     +PV  +G+GEG +DL PF A+ F
Sbjct: 342 VLTKLDGTAKGGIVIAIQRQLGVPVKLIGLGEGPDDLAPFTAEGF 386


>gi|32266089|ref|NP_860121.1| signal recognition particle-docking GTPase FtsY [Helicobacter
           hepaticus ATCC 51449]
 gi|32262138|gb|AAP77187.1| signal recognition particle-docking GTPase FtsY [Helicobacter
           hepaticus ATCC 51449]
          Length = 293

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 130/208 (62%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P V L+VGVNG GKTT I KL+        KVMLAAGDTFR+AAI+QLK+W ++     
Sbjct: 85  KPLVTLIVGVNGAGKTTTIAKLAHLAQTQNKKVMLAAGDTFRAAAIEQLKLWGEKLQIPV 144

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           + ++   D +A+A+++   A AK +D L IDTAGRLHN++ L   + K++RV ++     
Sbjct: 145 IATQHMHDPSAVAFDSINSAIAKNIDELYIDTAGRLHNHTNLNNELLKIVRVSQKALGDK 204

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P     VLD T G +A+ QV +F       G+I+TK+DGT++GG L  IV    IP+ ++
Sbjct: 205 PLRKFLVLDGTQGSSAINQVRIFSKNIDFDGIIITKLDGTSKGGALFSIVNELNIPILYI 264

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLDYG 317
           G+GE  NDL PF +K++  ++   +  G
Sbjct: 265 GIGERENDLIPFDSKEYVRILLDSIYQG 292


>gi|311065027|ref|YP_003971753.1| cell division protein FtsY [Bifidobacterium bifidum PRL2010]
 gi|310867347|gb|ADP36716.1| FtsY Cell division protein [Bifidobacterium bifidum PRL2010]
          Length = 413

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/309 (37%), Positives = 184/309 (59%), Gaps = 13/309 (4%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V  +S S I++L    + +S    + + +I++   L +   E++ED L+ +D+G   +++
Sbjct: 104 VPEKSGSRIQRLKAKLSRSSNPFGKALFNILTKDNLSESDWEDVEDTLLLADVGAEASEQ 163

Query: 66  IVEEL-----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVG 118
           +V EL     +T + + D  V+  L D   ++  +     +  N D   +H+P VI++VG
Sbjct: 164 LVGELRRDARITGKASPD-EVRATLRD--NMLDLVGRDTDRRLNVDKPDAHKPGVIIMVG 220

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSD 177
           VNG GKTT  GKL++       KV++ A DTFR+AA DQL+ W  R +   V S+  G+D
Sbjct: 221 VNGTGKTTTAGKLARLFVSEDKKVVMGAADTFRAAAADQLETWGARVNVPVVRSDKDGAD 280

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL VL
Sbjct: 281 PASVAFEAAARAKEDDADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVL 338

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +D
Sbjct: 339 DATTGQNGMAQAKVFAEAIGLTGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDD 398

Query: 298 LEPFVAKDF 306
           L PF  + F
Sbjct: 399 LAPFDPEGF 407


>gi|240047379|ref|YP_002960767.1| Cell division protein ftsY [Mycoplasma conjunctivae HRC/581]
 gi|239984951|emb|CAT04944.1| Cell division protein ftsY [Mycoplasma conjunctivae]
          Length = 338

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/276 (38%), Positives = 159/276 (57%), Gaps = 27/276 (9%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           +LI SDI     Q I+ EL  KR  ++ ++       SELI +++  + K +   +++R 
Sbjct: 66  ILIMSDISPDFVQIIISEL--KREVRNQNLTN-----SELIPELI--VDKMYTI-YANRS 115

Query: 112 -------------HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
                        +VILVVGVNG GKTT I K++ K+   G K ++ A DTFR+AA++QL
Sbjct: 116 LINTNLNIKDDQINVILVVGVNGSGKTTSISKIAHKLIQEGKKTLIVAADTFRAAAVEQL 175

Query: 159 KIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           +IWA+R  AD +   E   D  ++ Y   ++   +K DV+IIDTAGRL N   LM  + K
Sbjct: 176 EIWANRVGADILKPYENEQDPGSVVYRGVQKGIDEKFDVVIIDTAGRLQNKINLMNELKK 235

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + +++    P APH  L V+DATTGQN + Q + F  V   +G+++TKMDGT++GG +  
Sbjct: 236 INKIISEKIPGAPHESLLVIDATTGQNGVSQAKHFSDVTQISGIVLTKMDGTSKGGIVFS 295

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           I     I V  +G+GE I+DL+PF   D  + I G 
Sbjct: 296 IKDQLDIDVKLVGLGEKIDDLQPF---DLDSFIYGM 328


>gi|330946056|gb|EGH47332.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 205

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/200 (44%), Positives = 128/200 (64%), Gaps = 1/200 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHK 94
           +  + +DD + EE+E  L+ +D+GV     I++ L  K   K ++  + LY  +   +  
Sbjct: 6   LGKKAIDDDLLEEIETRLLTADVGVEATSVIIKSLTQKVARKQLTDAQALYTSLQGELAA 65

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           ML P+ +P      HRP VILVVGVNG GKTT IGKL+KK+   G KVMLAAGDTFR+AA
Sbjct: 66  MLKPVEQPLVIKSEHRPFVILVVGVNGAGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAA 125

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           ++QL++W +R     +    G+D+A++ ++A + A+A+ +DVLI DTAGRLH    LM  
Sbjct: 126 VEQLQVWGERNHIPVIAQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEE 185

Query: 215 IGKMIRVLKRLDPHAPHSVL 234
           + K+ RV+ +LD  APH VL
Sbjct: 186 LKKVRRVIGKLDADAPHEVL 205


>gi|317010981|gb|ADU84728.1| signal recognition particle receptor [Helicobacter pylori
           SouthAfrica7]
          Length = 293

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 154/271 (56%), Gaps = 6/271 (2%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           +  ++ ++  +EELE++LI  DI   + + +++ L      K + V  + +   E  +  
Sbjct: 17  VKEKKRENIPKEELEEILIGFDIQYDLIESLLQHLGDLVTPKQLEVALLRFVRGESYY-- 74

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                K      + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+
Sbjct: 75  ----DKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAV 130

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            QL++W +R +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   +
Sbjct: 131 KQLQLWGERLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNEL 190

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K+ R   ++   AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG +
Sbjct: 191 SKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAI 250

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + ++   K+P+ +LG+GE  +DL  F  + F
Sbjct: 251 LSVLYELKLPILYLGMGEKEDDLIAFDEERF 281


>gi|330466278|ref|YP_004404021.1| signal recognition particle-docking protein FtsY [Verrucosispora
           maris AB-18-032]
 gi|328809249|gb|AEB43421.1| signal recognition particle-docking protein FtsY [Verrucosispora
           maris AB-18-032]
          Length = 396

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/293 (39%), Positives = 170/293 (58%), Gaps = 17/293 (5%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDV 88
           +G+  ++S  RLD+ V EE+ED LI +D+G+   ++IV+ L  + R     S   +   +
Sbjct: 105 KGLLGLLSRDRLDEDVWEEIEDSLITADVGIDATREIVDRLRERTRVLGTRSAAELRALL 164

Query: 89  SELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           +  +   L P       D S R       P V+LVVGVNG GKTT  GK+++ +   G  
Sbjct: 165 AAELVNALDP-----ELDRSLRTTPKEGVPAVLLVVGVNGAGKTTTCGKIARVLIADGRS 219

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+L A DTFR+AA DQL+ WA R  A+ V    G+D A++A++A ++     VD +++DT
Sbjct: 220 VLLGAADTFRAAAADQLETWAGRVGAETVRGPEGADPASVAFDAVRRGIDTGVDTVLVDT 279

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           AGRL N   LM  +GK+ RV+++   H P    L +LDATTGQN L Q  +F  V   TG
Sbjct: 280 AGRLQNKVGLMDELGKVKRVVEK---HGPIDETLLILDATTGQNGLEQARVFTEVVNVTG 336

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +++TK+DGTA+GG +I +     IPV  +G+GEG +DL PF    F   + G 
Sbjct: 337 VVLTKLDGTAKGGIVIAVQRKLGIPVKLVGLGEGPDDLAPFDPAQFVDALLGT 389


>gi|323448576|gb|EGB04473.1| hypothetical protein AURANDRAFT_32555 [Aureococcus anophagefferens]
          Length = 418

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 181/344 (52%), Gaps = 39/344 (11%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII---SSRRLDDGVREELEDLLIRSDIG 59
            QK   ++L+ + K T G   +  +  + +  I    +   LDD V + LED L+ +DIG
Sbjct: 18  EQKAKDDALA-LAKFTAGLEKSRDQFGKDLKAIFGGAAGANLDDTV-DALEDALLSADIG 75

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-KMLMPLSKPFNWDFSHRPH---VIL 115
            A    I+E++   R   +   +    DV+ ++  +M   L+K  +      P    VIL
Sbjct: 76  AATTTTILEDV---RAVAEARGEYAEADVTAILRGRMAETLTKAGDGALRKAPAGPTVIL 132

Query: 116 VVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           V+G NG+GKTT IGKL++++  + G +V+LAA DTFR+AA+ QL  WA R + D V  + 
Sbjct: 133 VIGANGMGKTTTIGKLARRLRVEGGQRVLLAACDTFRAAAVGQLDEWAKRAAVDIVVPDA 192

Query: 175 GSDAAALAY--------------EAFKQ---------AQAKKVDVLIIDTAGRLHNNSIL 211
           G ++ + A               E+F+          A A   DVLI+DT+GRL NN+ L
Sbjct: 193 GVESPSAACYKALDVALGVAAVDESFRHSDLADDDVDAPAGPYDVLIVDTSGRLSNNAAL 252

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
              + K+ R + +  P APH  L V+DA  G+NA+     + A  G +GL +TK+DGTAR
Sbjct: 253 NEELKKIRRTIDKRAPGAPHDTLLVVDAAVGRNAVDMARAWQADVGVSGLAVTKLDGTAR 312

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G ++ +V    IPV  +GVGE ++DL  F   D  A +   LD
Sbjct: 313 AGFVVSVVEDLGIPVKLVGVGEALDDLRDF---DVDAFLDSLLD 353


>gi|298253255|ref|ZP_06977047.1| signal recognition particle GTPase [Gardnerella vaginalis 5-1]
 gi|297532650|gb|EFH71536.1| signal recognition particle GTPase [Gardnerella vaginalis 5-1]
          Length = 393

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/319 (38%), Positives = 189/319 (59%), Gaps = 22/319 (6%)

Query: 3   NQKVASESL-----SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD 57
           N++V SE L     S I++L +  A ++      + +IIS   L +   E++ED L+ +D
Sbjct: 76  NEEVKSELLPESTSSRIKRLRERLAHSANPFGRALFNIISKDHLSEEDWEDVEDTLLMAD 135

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFS--HR 110
           +G   ++++VE+L   R    ++      DV   +   L+ +      +  N D S  H 
Sbjct: 136 VGSRASEELVEDL---RKDARIAGTSNSEDVHSALRTKLLKIVDEDADRRLNVDKSNAHH 192

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VI++VGVNG GKTT  GKL++        VM AA DTFR+AA DQL+ WA   S   V
Sbjct: 193 PSVIMMVGVNGTGKTTTAGKLARLFIAKKRSVMFAAADTFRAAAADQLETWASAVSVPVV 252

Query: 171 -CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             ++ G+D A++A+ A  +A+ ++ D+LI+DTAGRL N + LM  +GK+ RV+++  P  
Sbjct: 253 RANKDGADPASVAFIAANKAKEEQTDLLIVDTAGRLQNKANLMEELGKIRRVIEKTMP-- 310

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK--IPVY 287
              VL VLDATTGQN + Q ++F    G TG+++TK+DG+A+GG  I I V H+  +PV 
Sbjct: 311 VDEVLLVLDATTGQNGMSQAKVFAEAIGITGVVLTKLDGSAKGG--IVIAVQHELGVPVK 368

Query: 288 FLGVGEGINDLEPFVAKDF 306
            +G+GEG +DL PF A+ F
Sbjct: 369 LVGLGEGPDDLVPFDAQSF 387


>gi|87301562|ref|ZP_01084402.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           WH 5701]
 gi|87283779|gb|EAQ75733.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           WH 5701]
          Length = 532

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 175/307 (57%), Gaps = 5/307 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V+ E + W+ +L +G   T   L   + D +    L   V ++LE  L+R+D+GV    
Sbjct: 219 QVSLEEIDWLSRLRRGMEKTRRGLVTQLLDSLGDDPLTPEVLDDLETTLLRADVGVQATD 278

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSH---RPHVILVVGVN 120
            ++E L  +   + V     L  + E +  +L  P+        +    R +V L+VGVN
Sbjct: 279 HVLEALRRRLNEEVVEPAEGLRFLKEQLRGLLETPIEASGELLLAPQRDRLNVWLLVGVN 338

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           GVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+ +W +R+    + +    +D A
Sbjct: 339 GVGKTTTLGKLANLAVRSGYSCLIAAADTFRAAAVQQVTVWGERSGVPVIANPSANADPA 398

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A   A +K ++++++DTAGRL   + LM  + K+ R++ +L P A    L VLDA
Sbjct: 399 AVVYDAIGAAHSKGIELVLVDTAGRLQTKNNLMEELSKVRRIVDKLAPEAVVESLLVLDA 458

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN LRQ   F + AG TG+++TK+DG+ARGG  + +     +P+ F+G GEGI DL 
Sbjct: 459 SQGQNGLRQAMAFASAAGLTGVVLTKLDGSARGGVALAVASEAGLPIRFIGAGEGIRDLR 518

Query: 300 PFVAKDF 306
           PF + +F
Sbjct: 519 PFNSFEF 525


>gi|261338450|ref|ZP_05966334.1| signal recognition particle FtsY [Bifidobacterium gallicum DSM
           20093]
 gi|270276435|gb|EFA22289.1| signal recognition particle FtsY [Bifidobacterium gallicum DSM
           20093]
          Length = 439

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/313 (38%), Positives = 186/313 (59%), Gaps = 18/313 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L +  + ++    + + +I++   L +   E++ED L+ +D+G   ++ +VEEL 
Sbjct: 136 SRLERLRERLSKSANPFGKALFNILAKDHLTEADWEDVEDTLLMADVGAEASEHLVEEL- 194

Query: 72  TKRYAK-----DVS-VQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVG 123
            +R A+     D S V+  L   S+L+  +   + +  N D   + +P VI++VGVNG G
Sbjct: 195 -RRDARVTGTADASEVRNALR--SQLLELVGTDVDRRLNADKPDADKPSVIIMVGVNGTG 251

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182
           KTT  GKL++       +V+L A DTFR+AA DQL+ W  +     V SE  G+D A++A
Sbjct: 252 KTTTAGKLARLFVSQDKQVLLGAADTFRAAAADQLETWGAKVGVPIVRSERDGADPASVA 311

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           +EA  +A+    DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDATTG
Sbjct: 312 FEASAKAKELDTDVLIIDTAGRLQNKANLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 369

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN + Q ++F    G TG+++TK+DG+A+GG +I +     +PV  +GVGEG +DL PF 
Sbjct: 370 QNGMAQAKVFAQAIGITGVVLTKLDGSAKGGIVIAVQKELGVPVKLVGVGEGPDDLAPFD 429

Query: 303 AKDFSAVITGCLD 315
            + F   + G LD
Sbjct: 430 PESF---VDGILD 439


>gi|317968465|ref|ZP_07969855.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           CB0205]
          Length = 488

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 174/306 (56%), Gaps = 5/306 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           ++ E + W+ +L +G   T       + D +    L   V ++LE LL+R+D+GV    +
Sbjct: 176 ISLEEIDWLGRLRRGMEKTRQGFVTQLLDTLGDDPLTPEVLDDLESLLLRADVGVQATDQ 235

Query: 66  IVEELLTKRYAKDVSVQ---RVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           ++E L  +   + V  +   R L D +  L+ + +             R +V L+VGVNG
Sbjct: 236 VLEALRKRLNEEVVEPEEGIRFLKDQLKGLLDQPIKASGTALLAPERGRLNVWLMVGVNG 295

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
           VGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W +R+    V +    +D AA
Sbjct: 296 VGKTTTLGKLANLAIRSGYSCLIAAADTFRAAAVQQVQVWGERSGVTVVSNPSANADPAA 355

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A   AQAK  D++++DTAGRL     LM  + K+ R++ +L P A    L VLDA+
Sbjct: 356 VVYDAIGAAQAKGTDLVLVDTAGRLQTKHNLMEELTKVRRIVDKLAPDAEVQSLLVLDAS 415

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQN L+Q   F   AG TG+++TK+DG++RGG  + +     +P+ F+G GEGI DL P
Sbjct: 416 QGQNGLKQAMAFAQAAGLTGVVLTKLDGSSRGGVALAVSSEAGLPIRFIGAGEGIRDLRP 475

Query: 301 FVAKDF 306
           F + +F
Sbjct: 476 FNSFEF 481


>gi|254431069|ref|ZP_05044772.1| signal recognition particle-docking protein FtsY [Cyanobium sp. PCC
           7001]
 gi|197625522|gb|EDY38081.1| signal recognition particle-docking protein FtsY [Cyanobium sp. PCC
           7001]
          Length = 529

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 187/320 (58%), Gaps = 18/320 (5%)

Query: 5   KVASESLSWIRKLTKGFASTS----LKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIG 59
           +V+ E + W+ +L +G   T      +L E +  D +S  +LDD     LE  L+R+D+G
Sbjct: 216 EVSLEEIDWLGRLRQGLEKTRQGFVTQLLEKLGDDPLSPEQLDD-----LETTLLRADVG 270

Query: 60  VAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           V    ++++  L +R  ++V      ++ +   + +++ + +   + P       R +V 
Sbjct: 271 VTATDQVLD-ALRERLNREVVDPAEGIRFLKEQLRDILEQPIQTSASPLLAPERGRLNVW 329

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-E 173
           L+VGVNGVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W +R+    + +  
Sbjct: 330 LLVGVNGVGKTTTLGKLANLAVRSGYSCLIAAADTFRAAAVQQVQVWGERSGVPVIANPS 389

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +D AA+ Y+A   A+A+  +++++DTAGRL     LM  + K+ R++ +L P A    
Sbjct: 390 ANADPAAVVYDALGAAKAQGTELVLVDTAGRLQTKHNLMEELAKVRRIVDKLAPDAAVES 449

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLD++ GQN LRQ   F + AG TG+++TK+DG+ARGG  + +     +P+ F+G GE
Sbjct: 450 LLVLDSSQGQNGLRQAMAFASAAGLTGVVITKLDGSARGGVALAVASEANLPIRFIGAGE 509

Query: 294 GINDLEPFVAKDF-SAVITG 312
           GI DL PF + +F  A++ G
Sbjct: 510 GIRDLRPFNSFEFVEALLAG 529


>gi|154173993|ref|YP_001408112.1| signal recognition particle-docking protein FtsY [Campylobacter
           curvus 525.92]
 gi|112803142|gb|EAU00486.1| signal recognition particle-docking protein FtsY [Campylobacter
           curvus 525.92]
          Length = 288

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 93/274 (33%), Positives = 159/274 (58%), Gaps = 13/274 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELI 92
           I+S++      +E LE++L+ +D+   + ++I+  L  +   +   ++RV+  Y + E  
Sbjct: 16  ILSAKTSKKITKENLEEILLEADVTYEIVEEIIYYLPPQNDVRREDLRRVMSSYFIYEKE 75

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            K+     +P       +P V L++GVNG GKTT I KL+    +AG  V+L A DTFR+
Sbjct: 76  RKI-----EP------DKPFVDLILGVNGAGKTTTIAKLANLYKNAGKSVILGACDTFRA 124

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI+QL+ W+ R +   V ++ G D +A+A++    A AK +D +I+DTAGRL N + L 
Sbjct: 125 GAIEQLRQWSLRLNVPIVATQQGHDPSAVAFDTISSAVAKNIDRVILDTAGRLQNQTNLA 184

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K++R+ ++    APH  + +LD T G   + Q + F+ +    G+I+TK+DGTA+G
Sbjct: 185 NELSKIVRISQKAYERAPHRKILILDGTQGNAGVAQAKAFNEIVELDGVIITKLDGTAKG 244

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G L  +    ++P+ ++GVGE + DL  F   +F
Sbjct: 245 GALFGVARELELPILYIGVGEKMEDLVKFDPDEF 278


>gi|46198376|ref|YP_004043.1| signal recognition particle receptor FtsY [Thermus thermophilus
           HB27]
 gi|46195998|gb|AAS80416.1| signal recognition particle receptor FtsY [Thermus thermophilus
           HB27]
          Length = 304

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/275 (41%), Positives = 157/275 (57%), Gaps = 21/275 (7%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           V EELE  L+ +D+GVA  +++++E+    +R  K+V        V E + +ML P  + 
Sbjct: 31  VLEELEMALLAADVGVAATEELLKEVRASGRRDLKEV--------VKEKLVQMLEPDERR 82

Query: 103 FNW-DFSHRPHVILVVGVNG----------VGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                   RP  +  V   G          VGKTT I KL +     G KV+  AGDTFR
Sbjct: 83  ATLRKLGFRPQKLRPVEPQGHVVMVVGVNGVGKTTTIAKLGRLYQGLGKKVLFCAGDTFR 142

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           +A   QL  W  R     +    G+D AALA++A K  +A+ +D+L +DTAGRLH    L
Sbjct: 143 AAGGAQLAEWGKRLGIPVIQGPEGADPAALAFDAAKARRARGLDLLFVDTAGRLHTKQGL 202

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + K+ R + + DP  P  V  VLDA TGQN L Q + FH   G TG+I+TK+DGTA+
Sbjct: 203 MEELKKVKRAIAKADPGEPGEVWLVLDAVTGQNGLEQAKRFHEAVGLTGVIVTKLDGTAK 262

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GG L+PIV T K+P+ F+GVGEG +DL+PF A+ F
Sbjct: 263 GGVLVPIVRTLKVPIRFIGVGEGPDDLQPFDAEAF 297


>gi|108563173|ref|YP_627489.1| signal recognition particle receptor [Helicobacter pylori HPAG1]
 gi|107836946|gb|ABF84815.1| signal recognition particle receptor [Helicobacter pylori HPAG1]
          Length = 293

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/272 (36%), Positives = 153/272 (56%), Gaps = 11/272 (4%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + +++ L      K + V  + +   E  +       K    
Sbjct: 27  KEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYY------DKTRLK 80

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 81  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTFRAAAVKQLQLWGEKL 140

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 141 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 200

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 201 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 260

Query: 286 VYFLGVGEGINDL-----EPFVAKDFSAVITG 312
           + +LG+GE  +DL     E F+A    AV  G
Sbjct: 261 ILYLGMGEKEDDLIAFDEERFIADLVDAVFVG 292


>gi|55980405|ref|YP_143702.1| signal recognition particle-docking protein FtsY [Thermus
           thermophilus HB8]
 gi|55771818|dbj|BAD70259.1| signal recognition particle-docking protein FtsY [Thermus
           thermophilus HB8]
          Length = 304

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/275 (41%), Positives = 157/275 (57%), Gaps = 21/275 (7%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           V EELE  L+ +D+GVA  +++++E+    +R  K+V        V E + +ML P  + 
Sbjct: 31  VLEELEMALLAADVGVAATEELLKEVRASGRRDLKEV--------VKEKLVQMLEPDERR 82

Query: 103 FNW-DFSHRPHVILVVGVNG----------VGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                   RP  +  V   G          VGKTT I KL +     G KV+  AGDTFR
Sbjct: 83  ATLRKLGFRPQKLRPVEPQGHVVMVVGVNGVGKTTTIAKLGRLYQGLGKKVLFCAGDTFR 142

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           +A   QL  W  R     +    G+D AALA++A K  +A+ +D+L +DTAGRLH    L
Sbjct: 143 AAGGAQLAEWGKRLGIPVIQGPEGADPAALAFDAAKARRARGLDLLFVDTAGRLHTKQGL 202

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + K+ R + + DP  P  V  VLDA TGQN L Q + FH   G TG+I+TK+DGTA+
Sbjct: 203 MEELKKVKRAIAKADPGEPGEVWLVLDAVTGQNGLEQAKRFHEAVGLTGVIVTKLDGTAK 262

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           GG L+PIV T K+P+ F+GVGEG +DL+PF A+ F
Sbjct: 263 GGVLVPIVRTLKVPIRFIGVGEGPDDLQPFDAEAF 297


>gi|315586568|gb|ADU40949.1| cell division protein FtsY [Helicobacter pylori 35A]
          Length = 297

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 31  KEELEEILIGFDIQYDLIESLLNHLGDSITPKQLEVALLRFVRGESYY------DKTRLK 84

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + RP V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 85  TITTRPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           + +LG+GE  +DL  F  + F
Sbjct: 265 ILYLGMGEKEDDLIAFDEERF 285


>gi|260655328|ref|ZP_05860816.1| signal recognition particle-docking protein FtsY [Jonquetella
           anthropi E3_33 E1]
 gi|260629776|gb|EEX47970.1| signal recognition particle-docking protein FtsY [Jonquetella
           anthropi E3_33 E1]
          Length = 309

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/281 (38%), Positives = 157/281 (55%), Gaps = 15/281 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           ++LE+ LI  D GV  A+++V  L  K   +   ++R    +      ++  LS     D
Sbjct: 36  DDLEETLIVGDAGVDTAEELVASL--KETGRREGIKRADELLEAFARLLVARLSAA---D 90

Query: 107 FSHRP-------HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            + +P       +V ++VGVNG GKTT  GKL+ +   AG KVM+AA DTFR+ A +QL+
Sbjct: 91  GTGQPLRLASGLNVCVMVGVNGSGKTTTAGKLACQFVKAGHKVMMAASDTFRAGASEQLQ 150

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +W +R     V  + GSD A++A++    AQA    +LI+DTAGRL +   LMA +GK+ 
Sbjct: 151 VWGERCGVRVVAQKPGSDPASVAFDGITAAQAAGARLLIVDTAGRLQSRQNLMAELGKIW 210

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV++R         L VLDA  GQNA  Q ++F  VA  TG ++ K D TA+GG ++ I 
Sbjct: 211 RVVERAVGKDHVETLIVLDAMIGQNAFVQADLFGQVAPLTGAVLAKYDNTAKGGVVLSIT 270

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320
               +PV ++GVGEG+ DL  F  + F   + G L    EK
Sbjct: 271 EKLGVPVRYVGVGEGVADLALFEPESF---VRGLLGLAGEK 308


>gi|323342051|ref|ZP_08082284.1| cell division protein FtsY [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464476|gb|EFY09669.1| cell division protein FtsY [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 319

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 112/300 (37%), Positives = 159/300 (53%), Gaps = 6/300 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           SN+K   E   +   L    AS   KLK+  T      + DD   + L  +LI+SD+ + 
Sbjct: 10  SNKKDQKEQELYSTGLDSTKASFGNKLKQMFT---GKPKFDDAWYDHLLAVLIQSDVSLK 66

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            AQKI++    K     +S +  L  + E+I +      +P+  +   R + ILVVGVNG
Sbjct: 67  SAQKIIK-TFRKNVKASMSEEEALETLVEVILRQYGDNLEPYAIE-PGRLNAILVVGVNG 124

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT   KL+      G KV+L  GDTFR+A  +QLK+WAD    DFV  +   D A++
Sbjct: 125 SGKTTTCAKLAYNYQQEGYKVLLVGGDTFRAAGSNQLKVWADEIGVDFVGGKDNQDPASV 184

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
             +A + A+    DV+I D+AGRL N   LM  + KM RVL+R      H+ L V+D  T
Sbjct: 185 YVDAARYAKEHDFDVMICDSAGRLQNKVNLMKELEKMKRVLEREVGSIDHTYL-VIDGNT 243

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q + F  V     LI+TK+DG+ +GG L+ I     + V  +G+GE + DL  F
Sbjct: 244 GQNGLSQAKTFTEVTPVNSLIVTKLDGSPKGGVLLSIKDELDLKVSHIGLGETVGDLRAF 303


>gi|254779261|ref|YP_003057366.1| putative signal recognition particule receptor FtsY [Helicobacter
           pylori B38]
 gi|254001172|emb|CAX29135.1| Putative signal recognition particule receptor FtsY [Helicobacter
           pylori B38]
          Length = 293

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 154/271 (56%), Gaps = 6/271 (2%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           I  ++ ++  +EELE++LI  DI   + + +++ L      K + V  + +   E  +  
Sbjct: 17  IKEKKRENVPKEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYY-- 74

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                K      + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+
Sbjct: 75  ----DKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAV 130

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            QL++W ++ +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   +
Sbjct: 131 KQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNEL 190

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K+ R   ++   AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG +
Sbjct: 191 SKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAI 250

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + ++   K+P+ +LG+GE  +DL  F  + F
Sbjct: 251 LSVLYELKLPILYLGMGEKEDDLIAFDEERF 281


>gi|308063451|gb|ADO05338.1| cell division protein (ftsY) [Helicobacter pylori Sat464]
          Length = 293

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 149/261 (57%), Gaps = 6/261 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 27  KEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 80

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       KV+L AGDTFR+AA+ QL++W ++ 
Sbjct: 81  TITTKPLVHLIVGVNGTGKTTTIAKLAKLSLKQHKKVLLGAGDTFRAAAVKQLQLWGEKL 140

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 141 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 200

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 201 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 260

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           + +LG+GE  +DL  F  + F
Sbjct: 261 ILYLGMGEKEDDLIAFDEERF 281


>gi|183602316|ref|ZP_02963683.1| FtsY signal recognition particle [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219682672|ref|YP_002469055.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190250|ref|YP_002967644.1| FtsY signal recognition particle [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195656|ref|YP_002969211.1| FtsY signal recognition particle [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218530|gb|EDT89174.1| FtsY signal recognition particle [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620322|gb|ACL28479.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248642|gb|ACS45582.1| FtsY signal recognition particle [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250210|gb|ACS47149.1| FtsY signal recognition particle [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793237|gb|ADG32772.1| FtsY signal recognition particle [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 466

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 181/306 (59%), Gaps = 7/306 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S +++L +  + +S    + + +I++  +L +   E++ED L+ +D+G   ++++V++L 
Sbjct: 162 SRLQRLRERLSKSSNPFGKALFNILAKDQLSEADWEDVEDTLLLADVGAEASEELVDKLR 221

Query: 72  TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTV 127
           T       S  R L D   SEL+  +   + +    +   + +P VI++VGVNG GKTT 
Sbjct: 222 TDARVTGESDPRQLRDALRSELLALVGPDMDRTLEAEKPDAKKPSVIIMVGVNGTGKTTT 281

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAF 186
            GKL++        V+L A DTFR+AA DQL+ W  +     V S+  G+D A++A+EA 
Sbjct: 282 AGKLARLFVSEDKTVLLGAADTFRAAAADQLETWGAKVDVPVVRSDREGADPASVAFEAS 341

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDATTGQN +
Sbjct: 342 AKAKELGTDVLIIDTAGRLQNKANLMDELGKIRRVAEKNLPV--DEVLLVLDATTGQNGM 399

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F    G TG+++TK+DG+A+GG +I +     +PV  +GVGEG +DL PF  + F
Sbjct: 400 AQAKVFAEAIGITGVVLTKLDGSAKGGIVISVQKELGVPVKLVGVGEGPDDLAPFDPESF 459

Query: 307 SAVITG 312
              I G
Sbjct: 460 VDGILG 465


>gi|159902550|ref|YP_001549894.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9211]
 gi|159887726|gb|ABX07940.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9211]
          Length = 444

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 175/314 (55%), Gaps = 21/314 (6%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           ++ E + W+++L +G   T       + +      L   V ++LE LL+R+D+GV    +
Sbjct: 131 ISLEDIDWLKRLRQGLEKTRKGFVTDLLEKFGDDPLTPEVLDDLEALLLRADVGVNATDQ 190

Query: 66  IV--------EELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           I+        EE+L      R+ K    Q V   +     ++L P  K  N        +
Sbjct: 191 IITALRRRLNEEVLDSKEGFRFLKQQLCQIVNKPIKNSNQEVLAPKHKSLN--------I 242

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            L+VGVNGVGKTT +GKL+     +G   ++AA DTFR+AA+ Q++IW  R+    + +E
Sbjct: 243 WLLVGVNGVGKTTTLGKLAHLALRSGYTALIAAADTFRAAAVQQVQIWGRRSGVSVIANE 302

Query: 174 I-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              +D AA+ ++A   A++K++++L++DTAGRL   + LM  + K+ R++ RL P A   
Sbjct: 303 TPNADPAAIVFDAIGAAKSKEIELLLVDTAGRLQTKNNLMEELAKIRRIIDRLAPEAIVE 362

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L VLDA+ GQN L Q   F   A  TG+++TK+DG++RGG    +    K+P+ F+G G
Sbjct: 363 SLLVLDASQGQNGLNQAMSFAESANLTGVVITKLDGSSRGGVAFAVASEAKLPIRFIGAG 422

Query: 293 EGINDLEPFVAKDF 306
           E + DL+PF + +F
Sbjct: 423 ERLQDLKPFNSFEF 436


>gi|289177965|gb|ADC85211.1| FtsY [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 508

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 181/306 (59%), Gaps = 7/306 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S +++L +  + +S    + + +I++  +L +   E++ED L+ +D+G   ++++V++L 
Sbjct: 204 SRLQRLRERLSKSSNPFGKALFNILAKDQLSEADWEDVEDTLLLADVGAEASEELVDKLR 263

Query: 72  TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTV 127
           T       S  R L D   SEL+  +   + +    +   + +P VI++VGVNG GKTT 
Sbjct: 264 TDARVTGESDPRQLRDALRSELLALVGPDMDRTLEAEKPDAKKPSVIIMVGVNGTGKTTT 323

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAF 186
            GKL++        V+L A DTFR+AA DQL+ W  +     V S+  G+D A++A+EA 
Sbjct: 324 AGKLARLFVSEDKTVLLGAADTFRAAAADQLETWGAKVDVPVVRSDREGADPASVAFEAS 383

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDATTGQN +
Sbjct: 384 AKAKELGTDVLIIDTAGRLQNKANLMDELGKIRRVAEKNLPV--DEVLLVLDATTGQNGM 441

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F    G TG+++TK+DG+A+GG +I +     +PV  +GVGEG +DL PF  + F
Sbjct: 442 AQAKVFAEAIGITGVVLTKLDGSAKGGIVISVQKELGVPVKLVGVGEGPDDLAPFDPESF 501

Query: 307 SAVITG 312
              I G
Sbjct: 502 VDGILG 507


>gi|210134966|ref|YP_002301405.1| cell division protein FtsY [Helicobacter pylori P12]
 gi|210132934|gb|ACJ07925.1| cell division protein FtsY [Helicobacter pylori P12]
          Length = 293

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 94/271 (34%), Positives = 153/271 (56%), Gaps = 6/271 (2%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           +  ++ +   +EELE++LI  DI   + + +++ L      K + V  + +   E  +  
Sbjct: 17  VKEKKRESVSKEELEEILIGFDIQYDLIESLLQHLGDLVTPKQLEVALLRFVRGESYY-- 74

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                K      + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+
Sbjct: 75  ----DKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAV 130

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            QL++W ++ +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   +
Sbjct: 131 KQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNEL 190

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K+ R   ++   AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG +
Sbjct: 191 SKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAI 250

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + ++   K+P+ +LG+GE  +DL  F  + F
Sbjct: 251 LSVLYELKLPILYLGMGEKEDDLIAFDEERF 281


>gi|288575011|ref|ZP_06393368.1| signal recognition particle-docking protein FtsY [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570752|gb|EFC92309.1| signal recognition particle-docking protein FtsY [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 311

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 117/318 (36%), Positives = 177/318 (55%), Gaps = 16/318 (5%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV--- 67
           +++ + +    A+   K  EG+  + S + LDD   EEL D LI  D+GV +++++    
Sbjct: 1   MAFFKGIASKLANVREKWSEGVASLFSGK-LDDEFWEELTDRLIAGDVGVELSEELAEEL 59

Query: 68  -----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
                 E + +  A  +  + +L    E +  M  PLS            ++++VGVNG 
Sbjct: 60  KETSRREGIREPEALLIRFKEILSSRLESVPMMGKPLSPGSGLS------IVVMVGVNGS 113

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GKL++++   G KV+LAA DTFR+AA +QL +W +R     +    GSDA A+A
Sbjct: 114 GKTTTTGKLAQQLVSQGNKVVLAAADTFRAAASEQLHVWGERIGIRVISQHQGSDAGAVA 173

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A+A   DV+I+DTAGRL     LM  + K+ RV+ +  P      L VLDA  G
Sbjct: 174 YDAINAAKASGADVVIVDTAGRLQAKHNLMEELRKVYRVITKEVPAERIESLLVLDAVMG 233

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA RQ E+F+ V   TG+++ K D TA+GG ++ I    K+P+ ++G+GE I DL PFV
Sbjct: 234 QNAFRQAEVFNEVTPLTGVVLAKYDNTAKGGIVLAIADKLKLPIRYVGLGEAIEDLAPFV 293

Query: 303 AKDF-SAVITGCLDYGEE 319
             +F  A++      GEE
Sbjct: 294 PSEFVDALLRSSDRSGEE 311


>gi|217032167|ref|ZP_03437666.1| hypothetical protein HPB128_186g33 [Helicobacter pylori B128]
 gi|298736465|ref|YP_003728991.1| signal recognition particle receptor [Helicobacter pylori B8]
 gi|216946157|gb|EEC24766.1| hypothetical protein HPB128_186g33 [Helicobacter pylori B128]
 gi|298355655|emb|CBI66527.1| signal recognition particle receptor [Helicobacter pylori B8]
          Length = 297

 Score =  168 bits (426), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 6/263 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + +++ L      K + V  + +   E  +       K    
Sbjct: 31  KEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYY------DKTRLK 84

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 85  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTFRAAAVKQLQLWGEKL 144

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264

Query: 286 VYFLGVGEGINDLEPFVAKDFSA 308
           + +LG+GE  +DL  F  + F A
Sbjct: 265 ILYLGMGEKEDDLIAFDEERFIA 287


>gi|208434674|ref|YP_002266340.1| signal recognition particle receptor [Helicobacter pylori G27]
 gi|208432603|gb|ACI27474.1| signal recognition particle receptor [Helicobacter pylori G27]
          Length = 293

 Score =  168 bits (426), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 96/278 (34%), Positives = 157/278 (56%), Gaps = 20/278 (7%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVL-----YDV 88
           +  ++ ++  +EELE++LI  DI   + + +++ L  L      +V++ R +     YD 
Sbjct: 17  VKEKKRENIPKEELEEILIGFDIQYDLIENLLKHLGDLVTPKQLEVALLRFVRGESYYDK 76

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + L                + +P V L+VGVNG GKTT I KL+K       K +L AGD
Sbjct: 77  TRL-------------KTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGD 123

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+AA+ QL++W ++ +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN 
Sbjct: 124 TFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQ 183

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           + L   + K+ R   ++   AP     +LD T G + L Q ++FH      G+IMTK+DG
Sbjct: 184 TNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDG 243

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           T++GG ++ ++   K+P+ +LG+GE  +DL  F  + F
Sbjct: 244 TSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERF 281


>gi|283782585|ref|YP_003373339.1| signal recognition particle-docking protein FtsY [Gardnerella
           vaginalis 409-05]
 gi|283441393|gb|ADB13859.1| signal recognition particle-docking protein FtsY [Gardnerella
           vaginalis 409-05]
          Length = 393

 Score =  168 bits (426), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 121/317 (38%), Positives = 186/317 (58%), Gaps = 18/317 (5%)

Query: 3   NQKVASESL-----SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD 57
           N++V SE L     S I++L    A ++      + +IIS   L +   E++ED L+ +D
Sbjct: 76  NEEVKSELLPESTSSRIKRLRGRLAHSANPFGRALFNIISKDHLSEEDWEDVEDTLLMAD 135

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFS--HR 110
           +G   ++++VE+L   R    ++      DV   +   L+ +      +  N D S  H 
Sbjct: 136 VGSRASEELVEDL---RKDARIAGTSNSEDVHSALRTKLLKIVDEDADRRLNVDKSDAHH 192

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VI++VGVNG GKTT  GKL++        VM AA DTFR+AA DQL+ WA   S   V
Sbjct: 193 PSVIMMVGVNGTGKTTTAGKLARLFIAKKRSVMFAAADTFRAAAADQLETWASAVSVPVV 252

Query: 171 -CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             ++ G+D A++A+ A  +A+ ++ D+LI+DTAGRL N + LM  +GK+ RV+++  P  
Sbjct: 253 RANKDGADPASVAFIAANKAKEEQTDLLIVDTAGRLQNKANLMEELGKIRRVIEKTMP-- 310

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              VL VLDATTGQN + Q ++F    G TG+++TK+DG+A+GG +I +     +PV  +
Sbjct: 311 VDEVLLVLDATTGQNGMSQAKVFAEAIGITGVVLTKLDGSAKGGIVIAVQRELGVPVKLV 370

Query: 290 GVGEGINDLEPFVAKDF 306
           G+GEG +DL PF A+ F
Sbjct: 371 GLGEGPDDLVPFDAQSF 387


>gi|261839418|gb|ACX99183.1| cell division protein (ftsY) [Helicobacter pylori 52]
          Length = 297

 Score =  168 bits (426), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 10/263 (3%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           +EELE++LI  DI   + + ++  L  L      +V++ R +   S      L  ++   
Sbjct: 31  KEELEEILIGFDIQYDLIESLLNHLGDLVTPKQLEVALLRFVRGESYYDKTRLKTITT-- 88

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
                 +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W +
Sbjct: 89  ------KPLVYLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGE 142

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           + +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   
Sbjct: 143 KLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCS 202

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           ++   AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K
Sbjct: 203 KVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELK 262

Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306
           +P+ +LG+GE  +DL  F  + F
Sbjct: 263 LPIIYLGMGEKEDDLIAFDEERF 285


>gi|223041283|ref|ZP_03611526.1| signal recognition particle-docking protein FtsY [Campylobacter
           rectus RM3267]
 gi|222877450|gb|EEF12588.1| signal recognition particle-docking protein FtsY [Campylobacter
           rectus RM3267]
          Length = 289

 Score =  168 bits (426), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 158/282 (56%), Gaps = 14/282 (4%)

Query: 28  LKEGITDIISSRRLDDGVREE-LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL- 85
           L + +  I SS+  D  + +E LE++L+ +DI   + ++I+  L  +   K   ++R+L 
Sbjct: 9   LDKTLAAIRSSKPADKKISKEILEEILLEADIAYEIVEEILYYLPPQNEVKKDDLKRLLN 68

Query: 86  -YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
            Y + E   +             S +P V L++GVNG GKTT I KL+    ++G  V+L
Sbjct: 69  TYFIYEEGREAK-----------SGKPFVELILGVNGAGKTTTIAKLANLYKNSGKSVIL 117

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            A DTFR+ AI+QL+ WA R     V ++ G D +A+A++    A AK +D +I+DTAGR
Sbjct: 118 GACDTFRAGAIEQLRQWAQRAGVPIVATQQGHDPSAVAFDTIGSAVAKNLDNVILDTAGR 177

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           L N + L   + K++R+  R    APH  + +LD T G   L Q + F+ +    G+I+T
Sbjct: 178 LQNQTNLAGELSKIVRIAGRAYAGAPHRKILILDGTQGNAGLAQAKAFNDMVSLDGVIIT 237

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           K+DGT +GG L  +    ++P+ ++G GE ++DL  F   DF
Sbjct: 238 KLDGTPKGGALFSVARELELPILYIGTGETMDDLIKFDPHDF 279


>gi|308184548|ref|YP_003928681.1| cell division protein (ftsY) [Helicobacter pylori SJM180]
 gi|308060468|gb|ADO02364.1| cell division protein (ftsY) [Helicobacter pylori SJM180]
          Length = 293

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/268 (35%), Positives = 152/268 (56%), Gaps = 20/268 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVL-----YDVSELIHKMLMP 98
           +EELE++LI  DI   + + +++ L  L      +V++ R +     YD + L       
Sbjct: 27  KEELEEILISFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGDSYYDKTRL------- 79

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
                    + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL
Sbjct: 80  ------KTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQL 133

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W ++ +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+
Sbjct: 134 QLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKI 193

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            R   ++   AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ +
Sbjct: 194 ARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSV 253

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +   K+P+ +LG+GE  +DL  F  + F
Sbjct: 254 LYELKLPILYLGMGEKEDDLIAFDEERF 281


>gi|145349192|ref|XP_001419024.1| IISP family transporter: SRP receptor alpha-chain-like protein FtsY
           [Ostreococcus lucimarinus CCE9901]
 gi|144579254|gb|ABO97317.1| IISP family transporter: SRP receptor alpha-chain-like protein FtsY
           [Ostreococcus lucimarinus CCE9901]
          Length = 317

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/185 (49%), Positives = 122/185 (65%), Gaps = 3/185 (1%)

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKLS + +++G KVM+  GDTFR+AA +QL  WA+RT A    S   +   A+ Y
Sbjct: 129 KTTTLGKLSHRFAESGAKVMMVPGDTFRAAAAEQLATWAERTGAVMSDSPPNTKPGAVCY 188

Query: 184 EAFKQAQAK-KVDVLIIDTAGRLHNNSILMAG-IGKMIRVLKRLDPHAPHSVLQVLDATT 241
           +A  +A A+  VDV++ DT+GRLHNNS LM   +G    + KRL P APH VL VLD TT
Sbjct: 189 KAVDEACARGDVDVVLADTSGRLHNNSQLMDELVGVKNSISKRL-PSAPHEVLLVLDGTT 247

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G N L Q  +F+   G TG+I+TK+DGT+RGG ++ +V    IPV F+GVGE + DL+ F
Sbjct: 248 GLNMLNQARVFNEAVGVTGIILTKLDGTSRGGAVVSVVDELGIPVKFVGVGESMQDLQSF 307

Query: 302 VAKDF 306
            A  F
Sbjct: 308 DAVGF 312


>gi|317014174|gb|ADU81610.1| signal recognition particle-docking protein FtsY [Helicobacter
           pylori Gambia94/24]
          Length = 292

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 6/263 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + +++ L      K + V  + +   E  +       K    
Sbjct: 26  KEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 79

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 80  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 139

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 140 NVQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 199

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 200 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 259

Query: 286 VYFLGVGEGINDLEPFVAKDFSA 308
           + +LG+GE  +DL  F  + F A
Sbjct: 260 ILYLGMGEKEDDLIAFDEERFIA 282


>gi|317009226|gb|ADU79806.1| signal recognition particle receptor [Helicobacter pylori India7]
          Length = 293

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 149/261 (57%), Gaps = 6/261 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + +++ L      K + V  + +   E  +       K    
Sbjct: 27  KEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYY------DKTRLK 80

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 81  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTFRAAAVKQLQLWGEKL 140

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 141 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 200

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 201 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 260

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           + +LG+GE  +DL  F  + F
Sbjct: 261 ILYLGMGEKEDDLIAFDEERF 281


>gi|229821030|ref|YP_002882556.1| signal recognition particle-docking protein FtsY [Beutenbergia
           cavernae DSM 12333]
 gi|229566943|gb|ACQ80794.1| signal recognition particle-docking protein FtsY [Beutenbergia
           cavernae DSM 12333]
          Length = 394

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/281 (39%), Positives = 162/281 (57%), Gaps = 11/281 (3%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK------RYAKDVSVQRVLYDV 88
           +++   + +G  EELED L+ +D+GV    +++E L T+      R A  V        +
Sbjct: 110 VLARDHIGEGDWEELEDTLLAADLGVGPTTELMESLRTRVRVLGTRDADSVRALLRELLL 169

Query: 89  SELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           +++   M   L  S     D    P  +LVVGVNG GKTT +GKL++ +  +   V+L A
Sbjct: 170 AQVDPAMDRALADSPSLGADDELHPATVLVVGVNGTGKTTTVGKLARLLVASDRDVVLGA 229

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
            DTFR+AA DQL  W  R     + ++  G+D A++A+EA + A     DV+I+DTAGRL
Sbjct: 230 ADTFRAAAADQLATWGSRVGVPVIRADRYGADPASVAFEAVRAADEAGADVVIVDTAGRL 289

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N + LM  +GK+ RV  R  P A    L VLDATTGQN LRQ  +F  V   TG+++TK
Sbjct: 290 QNKAGLMDELGKIARVASRRAPIA--ETLLVLDATTGQNGLRQARVFAEVVPLTGIVLTK 347

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +DG+A+GG ++ +     +PV F+G+GEG +DL PF    F
Sbjct: 348 LDGSAKGGIVVAVQRELGVPVKFVGLGEGPDDLAPFEPDAF 388


>gi|261838004|gb|ACX97770.1| signal recognition particule receptor [Helicobacter pylori 51]
 gi|297379959|gb|ADI34846.1| signal recognition particle-docking protein FtsY [Helicobacter
           pylori v225d]
          Length = 297

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 31  KEELEEILIGFDIQYDLIESLLNHLGDSITPKQLEVALLRFVRGESYY------DKTRLK 84

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 85  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           + +LG+GE  +DL  F  + F
Sbjct: 265 ILYLGMGEKEDDLIAFDEERF 285


>gi|291165577|gb|EFE27626.1| signal recognition particle-docking protein FtsY [Filifactor alocis
           ATCC 35896]
          Length = 429

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/302 (41%), Positives = 189/302 (62%), Gaps = 4/302 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G + T+  +   I  ++ +  ++D+ + EELE++LI SD+G     +IV+ L 
Sbjct: 129 FFARLKEGLSKTTQNITGKIDQMLGNYTKIDEDMLEELEEILITSDVGYETTVEIVDRLR 188

Query: 72  TKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K + +  +V  ++  +I  ML    +    + S  P +++VVGVNGVGKTT IGK
Sbjct: 189 QNLKEKLIDNPAQVKPELKLVIESMLQENQESLRIEES--PSILVVVGVNGVGKTTSIGK 246

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +M   G  V+LAA DTFR+AA DQL IWA+R   D V  + G+D +A+ ++    A+
Sbjct: 247 LAHQMKGQGKSVLLAAADTFRAAAADQLTIWAERAGVDIVKHQEGADPSAVIFDGIHAAK 306

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVLI DTAGRLHN   LM  +GK+ ++++R    A   VL V+DATTGQNA+ Q +
Sbjct: 307 KRNIDVLICDTAGRLHNRKNLMQELGKIFKIVEREYLEANKEVLLVIDATTGQNAMNQAK 366

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VA  +G+I+TK+DGTA+GG ++ I    KIPV F+GVGE I+DL+ F A  F+  +
Sbjct: 367 VFQEVAPLSGIILTKLDGTAKGGVVLAITQELKIPVKFIGVGEQIDDLQMFDASSFAEAM 426

Query: 311 TG 312
            G
Sbjct: 427 IG 428


>gi|120403169|ref|YP_952998.1| signal recognition particle-docking protein FtsY [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955987|gb|ABM12992.1| signal recognition particle-docking protein FtsY [Mycobacterium
           vanbaalenii PYR-1]
          Length = 449

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/273 (41%), Positives = 161/273 (58%), Gaps = 13/273 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           EE+ED L+ +D+G  V + +V  L  K  A  V   R   D   ++ ++L+   +P + D
Sbjct: 183 EEIEDTLLIADLGPVVTESVVTSLRAKMAASQV---RTEADARAVLREVLIAELRP-DLD 238

Query: 107 FS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            S        +P V+LVVGVNG GKTT +GKL++ +   G +V+L A DTFR+AA DQL+
Sbjct: 239 RSIKALPHADKPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQ 298

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            WA R  A  V    G+D A++A++A     A   DV++IDTAGRLH  + LM  +GK+ 
Sbjct: 299 SWASRVGAQVVRGPEGADPASVAFDAVDTGIAAGADVVVIDTAGRLHTKTGLMDELGKVK 358

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV+ +    A   VL VLDAT GQN+L Q  +F  V   TG+++TK+DGTA+GG +  + 
Sbjct: 359 RVVGKR--AAVDEVLLVLDATIGQNSLPQARVFAEVVDITGVVLTKLDGTAKGGIVFRVQ 416

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
               +PV  +G+GEG +DL PF    F   + G
Sbjct: 417 QELGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 449


>gi|240169624|ref|ZP_04748283.1| putative cell division protein [Mycobacterium kansasii ATCC 12478]
          Length = 429

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/269 (41%), Positives = 160/269 (59%), Gaps = 5/269 (1%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNW 105
           +++ED L+ +D+G  V Q +V +L ++  + DV  +     V  E++ K L P+      
Sbjct: 163 QDVEDTLLVADLGPVVTQSVVSQLRSRLASADVRSEADARAVLREVLVKELQPIMDRSIR 222

Query: 106 DFSH--RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
              H   P V+LVVGVNG GKTT +GKL++ +   G +V+L A DTFR+AA DQL+ WA 
Sbjct: 223 ALPHADHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAA 282

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           R  A+ V    G+D A++A++A  +  A   DV++IDTAGRLH    LM  +GK+ RV+ 
Sbjct: 283 RVGAEVVRGAEGADPASVAFDAVDKGIAHGADVVLIDTAGRLHTKVGLMDELGKVKRVVT 342

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           R    A   VL VLDAT GQN L Q  +F  V   TG+++TK+DGTA+GG +  +     
Sbjct: 343 RR--AAVDEVLLVLDATIGQNGLAQARVFAEVVDITGVVLTKLDGTAKGGIVFRVQQELG 400

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +PV  +G+GEG +DL PF    F   + G
Sbjct: 401 VPVKLVGLGEGPDDLAPFEPAAFVDALLG 429


>gi|33864550|ref|NP_896109.1| signal recognition particle docking protein FtsY [Synechococcus sp.
           WH 8102]
 gi|33632073|emb|CAE06526.1| signal recognition particle docking protein FtsY [Synechococcus sp.
           WH 8102]
          Length = 485

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 176/316 (55%), Gaps = 12/316 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           ++ E + W+ +L +G   T      G+ + +    L   V ++LE LL+R+D GV    +
Sbjct: 172 ISLEEIDWLGRLRRGLEKTRQGFVSGLLENLGDDPLTPEVLDDLETLLLRADAGVQATDQ 231

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHVILVVG 118
           +++ L   R   +V V      +  L  ++   L  P     +        R ++ L+VG
Sbjct: 232 VLDAL---RQRMNVEVVDPAEGIRFLKEQLRGLLDAPIAASGAQLIAPERDRLNIWLMVG 288

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSD 177
           VNGVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W  R+    V +    +D
Sbjct: 289 VNGVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVQVWGKRSDVPVVSNPSSNAD 348

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A   A+++  D+L++DTAGRL     LM  + K+ +++ RL P A    L +L
Sbjct: 349 PAAVVFDAIGAARSRGTDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEAKVESLLIL 408

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+ GQN LRQ   F   AG TG+++TK+DGTARGG  + +     +P+ F+G GEGI D
Sbjct: 409 DASQGQNGLRQAMAFAKAAGLTGVVITKLDGTARGGVALAVSSEAGLPIRFIGAGEGIRD 468

Query: 298 LEPFVAKDF-SAVITG 312
           L PF + +F  A++ G
Sbjct: 469 LRPFNSYEFVEALLAG 484


>gi|323359697|ref|YP_004226093.1| signal recognition particle GTPase [Microbacterium testaceum
           StLB037]
 gi|323276068|dbj|BAJ76213.1| signal recognition particle GTPase [Microbacterium testaceum
           StLB037]
          Length = 290

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/295 (39%), Positives = 170/295 (57%), Gaps = 14/295 (4%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAK 77
           A  S  L   +  +     +D+   ++LE  L+ +D G  V +++V+EL  K    R   
Sbjct: 2   AENSWSLGRALRGLFVKPTIDETTWDDLETALLTADFGPDVTERLVDELREKVERFRTTD 61

Query: 78  DVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
              +QR+L + + E   K    L        + RP V+LVVGVNGVGKTT IGK +K + 
Sbjct: 62  PRDLQRMLKETLEEHFAKFDTTLR------LTERPAVVLVVGVNGVGKTTTIGKFAKFLQ 115

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVD 195
             G  V++ A DTFR+AA+DQL  WA+R  A  V  +  G D A++A++    A+    +
Sbjct: 116 RYGRTVVVGAADTFRAAAVDQLATWAERGGATIVRPQHEGQDPASVAFQTVAHAKETGTE 175

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++++DTAGRLH    LM  +GK+ RV+++  P A   VL VLDATTGQN L Q + F   
Sbjct: 176 IVLVDTAGRLHTKGGLMDELGKIKRVIEKQAPIA--EVLLVLDATTGQNGLMQAQAFLDS 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           AG TGL++TK+DG+A+GG ++ +     IPV  LG GEGINDL  F    F++ +
Sbjct: 234 AGVTGLVLTKLDGSAKGGFVLAVQERTGIPVKLLGQGEGINDLTGFTPHVFASSL 288


>gi|318042977|ref|ZP_07974933.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           CB0101]
          Length = 411

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 172/309 (55%), Gaps = 11/309 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           ++ E + W+ +L +G   T       + D +    L   V ++LE LL+R+D+GV    +
Sbjct: 99  ISLEEIDWLGRLRRGMEKTRRGFVTQLLDNLGDDPLTPEVLDDLESLLLRADVGVQATDQ 158

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHVILVVG 118
           ++E L  +   + V     +  + E +  +L     P     +        R +V L+VG
Sbjct: 159 VLEALRKRLNEEVVEPAEGIRFLKEQLKGLL---DAPIQASGAQLLAPERGRLNVWLMVG 215

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSD 177
           VNGVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+ +W +R+    V +    +D
Sbjct: 216 VNGVGKTTTLGKLANLAVRSGYSCLIAAADTFRAAAVQQVAVWGERSGVTVVSNPSANAD 275

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A   AQAK  D++++DTAGRL     LM  + K+ R++ +L P A    L VL
Sbjct: 276 PAAVVFDAIGAAQAKGTDLVLVDTAGRLQTKHNLMEELSKVRRIVDKLAPDALVQSLLVL 335

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+ GQN L+Q   F   AG TG+++TK+DG++RGG  + +     +P+ F+G GEGI D
Sbjct: 336 DASQGQNGLKQAMAFAQAAGLTGVVITKLDGSSRGGVALAVASEAGLPIRFIGAGEGIRD 395

Query: 298 LEPFVAKDF 306
           L PF + +F
Sbjct: 396 LRPFNSFEF 404


>gi|187734932|ref|YP_001877044.1| signal recognition particle-docking protein FtsY [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187424984|gb|ACD04263.1| signal recognition particle-docking protein FtsY [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 282

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/274 (39%), Positives = 150/274 (54%), Gaps = 6/274 (2%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
            K+  T    S R+D    EELE  L+ +DIG+  A  I ++L   + +K +  + ++  
Sbjct: 5   FKKLFTKFSRSSRID---WEELEAELVAADIGIRRAMGIADQL---KESKGLDAENLVES 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             E++ +     +         +P VILVVGVNG GKTT   KL+  +   G +V+LAA 
Sbjct: 59  TREVLRRAFPSTAPSLPAPPEGKPLVILVVGVNGTGKTTSAAKLAHLLQKQGSRVLLAAA 118

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QL+ WAD+ +          D A++ YEA  QA  +    LI DTAGRLH 
Sbjct: 119 DTFRAAAVEQLQSWADKLNIPICKGAPSQDPASVCYEAHTQAIREGFQYLICDTAGRLHT 178

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
              LM  + K+ R L + D  APHS L V+DATTG NAL Q   FH       +I+TKMD
Sbjct: 179 RHNLMEELSKIRRTLAKQDASAPHSTLLVVDATTGANALAQAREFHKATPLDSVIITKMD 238

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G+ +GG  + I+    I   FLG GEG  D EPF
Sbjct: 239 GSGKGGVAVAIMDEMHISPSFLGTGEGAEDFEPF 272


>gi|307637453|gb|ADN79903.1| Signal recognition particle receptor protein [Helicobacter pylori
           908]
 gi|325996043|gb|ADZ51448.1| Signal recognition particle receptor protein [Helicobacter pylori
           2018]
 gi|325997638|gb|ADZ49846.1| Cell division protein [Helicobacter pylori 2017]
          Length = 292

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/268 (35%), Positives = 152/268 (56%), Gaps = 20/268 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVL-----YDVSELIHKMLMP 98
           +EELE++LI  DI   + + +++ L  L      +V++ R +     YD + L       
Sbjct: 26  KEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYYDKTRL------- 78

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
                    + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL
Sbjct: 79  ------KTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTFRAAAVKQL 132

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W ++ +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+
Sbjct: 133 QLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKI 192

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            R   ++   AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ +
Sbjct: 193 ARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSV 252

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +   K+P+ +LG+GE  +DL  F  + F
Sbjct: 253 LYELKLPILYLGMGEKEDDLIAFDEERF 280


>gi|217967337|ref|YP_002352843.1| signal recognition particle-docking protein FtsY [Dictyoglomus
           turgidum DSM 6724]
 gi|217336436|gb|ACK42229.1| signal recognition particle-docking protein FtsY [Dictyoglomus
           turgidum DSM 6724]
          Length = 299

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 176/293 (60%), Gaps = 21/293 (7%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           KGFA       E + +I    R+D  + +ELE  LI+SD+G+ +  +I+ E+  ++ +  
Sbjct: 13  KGFA-------ERLQNIFKFSRVDTELLDELEMELIQSDLGIELTNEIIGEIKKRKISDM 65

Query: 79  VSVQRVLYDVSELI-----HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             ++  L+D  + I     +K+ +         + +R +V++ +GVNG GKT+ +GK + 
Sbjct: 66  QELRDFLFDFFKSILDGLDYKLRL---------YDNRLNVVIFIGVNGTGKTSTVGKFAY 116

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            + + G   ++AA DTFR+AAIDQ+K W +R   D V  + G+D  A+ + A + A+A+ 
Sbjct: 117 YLKNLGYFPIIAAADTFRAAAIDQIKRWGERVGVDVVAQKEGADPGAVVFNAIEAAKARN 176

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DVL++DTAGR+H  S L+  + K+ +++++   + P   L V+DAT GQN +RQVE+FH
Sbjct: 177 KDVLLVDTAGRMHTKSNLVEELKKIEKIVEKTLGYPPSENLVVIDATLGQNVVRQVEIFH 236

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                TG ++TK+DGTA+GG +  ++    IPV  + +GE ++DL+PF   +F
Sbjct: 237 NAVNLTGAVLTKLDGTAKGGVIFNVIKRFNIPVKLVTIGEELDDLKPFDPNEF 289


>gi|237785774|ref|YP_002906479.1| signal recognition particle receptor [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758686|gb|ACR17936.1| signal recognition particle receptor [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 643

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 173/302 (57%), Gaps = 17/302 (5%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           I +L    + +   + +G+  I+    LD+   E++ED L+ +D+G A   K+V+ L  K
Sbjct: 344 IHRLRGRLSRSQNAIGKGVLGILGGGDLDEDAWEDVEDTLVMADLGTAATMKVVDSLREK 403

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTV 127
             ++ VS ++   +   L+ + L+    P          +  +P VILVVGVNG GKTT 
Sbjct: 404 IASQGVSSEQ---EARALLRQALIESCHPEMDRSIRAMPYEGKPAVILVVGVNGTGKTTT 460

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL++ ++  G  V+L A DTFR+AA DQL+ W  R +A  V     +D A++A++A  
Sbjct: 461 AGKLARVLTAMGHSVLLGAADTFRAAAADQLEAWGSRVNARTVRGPEDADPASVAFDAVA 520

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR---LDPHAPHSVLQVLDATTGQN 244
              A   DV+++DTAGRLH  + LM  +GK+ RV+++   +D      VL VLDAT GQN
Sbjct: 521 AGVADHADVVVLDTAGRLHTKNNLMDQLGKVKRVVEKKAVVD-----EVLLVLDATVGQN 575

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q  +F      TG+++TK+DGTA+GG +  +     +PV  +G+GEG++DL PF  +
Sbjct: 576 GLVQARIFAETVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKMVGLGEGVDDLAPFEVE 635

Query: 305 DF 306
            F
Sbjct: 636 GF 637


>gi|283954764|ref|ZP_06372280.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283793604|gb|EFC32357.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 288

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/272 (36%), Positives = 153/272 (56%), Gaps = 23/272 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV-----LYDVSELIHKMLMPLSKPF 103
           LE++L+ +D+   + ++I+  L  +   K   ++RV     LY+  E I           
Sbjct: 31  LEEILLEADVSYEIIEEIIYYLPPQNEIKKEDLKRVMGSYFLYEKKETIQ---------- 80

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
                 +P V L++GVNG GKTT I KL+    +   KV+L A DTFR+ AI+QLK+WA 
Sbjct: 81  -----EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQ 135

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +   D V +  G D +A+A++   +A+AK  D +IIDTAGRL N   L   + K++R+  
Sbjct: 136 KIDVDIVLTAQGHDPSAVAFDTISKAKAKGFDRVIIDTAGRLQNQKNLAHELEKIVRISN 195

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           +    APH  + VLD T G   + Q + F+ +    G+I+TK+DGTA+GG L  I    +
Sbjct: 196 KALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELE 255

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +P++++GVGE + DL+ F   D +A +   LD
Sbjct: 256 LPIFYIGVGEQMTDLQEF---DANAYLDTLLD 284


>gi|15645382|ref|NP_207556.1| cell division protein (ftsY) [Helicobacter pylori 26695]
 gi|3334188|sp|O25458|FTSY_HELPY RecName: Full=Cell division protein ftsY homolog
 gi|2313887|gb|AAD07809.1| cell division protein (ftsY) [Helicobacter pylori 26695]
          Length = 293

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/268 (35%), Positives = 152/268 (56%), Gaps = 20/268 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVL-----YDVSELIHKMLMP 98
           +EELE++LI  DI   + + +++ L  L      +V++ R +     YD + L       
Sbjct: 27  KEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLRFVRGDSYYDKTRL------- 79

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
                    + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL
Sbjct: 80  ------KTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQL 133

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W ++ +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+
Sbjct: 134 QLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKI 193

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            R   ++   AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ +
Sbjct: 194 ARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSV 253

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +   K+P+ +LG+GE  +DL  F  + F
Sbjct: 254 LYELKLPILYLGMGEKEDDLIAFDEERF 281


>gi|217033744|ref|ZP_03439170.1| hypothetical protein HP9810_7g25 [Helicobacter pylori 98-10]
 gi|216943793|gb|EEC23233.1| hypothetical protein HP9810_7g25 [Helicobacter pylori 98-10]
          Length = 297

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 150/263 (57%), Gaps = 10/263 (3%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           +EELE++LI  DI   + + ++  L  L      +V++ R +   S      L  ++   
Sbjct: 31  KEELEEILIGFDIQYDLIESLLNHLGDLVTPKQLEVALLRFVRGESYYDKTRLKTITT-- 88

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
                 +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W +
Sbjct: 89  ------KPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGE 142

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           + +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   
Sbjct: 143 KLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCS 202

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           ++   AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K
Sbjct: 203 KVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELK 262

Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306
           +P+ +LG+GE  +DL  F  + F
Sbjct: 263 LPILYLGMGEKEDDLIAFDEERF 285


>gi|317180527|dbj|BAJ58313.1| cell division protein [Helicobacter pylori F32]
          Length = 297

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 31  KEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 84

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 85  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           + +LG+GE  +DL  F  + F
Sbjct: 265 ILYLGMGEKEDDLIAFDEERF 285


>gi|188527393|ref|YP_001910080.1| cell division protein (ftsY) [Helicobacter pylori Shi470]
 gi|188143633|gb|ACD48050.1| cell division protein (ftsY) [Helicobacter pylori Shi470]
 gi|308062086|gb|ADO03974.1| cell division protein (ftsY) [Helicobacter pylori Cuz20]
 gi|317177406|dbj|BAJ55195.1| cell division protein [Helicobacter pylori F16]
 gi|317182074|dbj|BAJ59858.1| cell division protein [Helicobacter pylori F57]
          Length = 297

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 31  KEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 84

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 85  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           + +LG+GE  +DL  F  + F
Sbjct: 265 ILYLGMGEKEDDLIAFDEERF 285


>gi|159479342|ref|XP_001697752.1| chloroplast SRP receptor [Chlamydomonas reinhardtii]
 gi|158274120|gb|EDO99904.1| chloroplast SRP receptor [Chlamydomonas reinhardtii]
          Length = 338

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/265 (37%), Positives = 142/265 (53%), Gaps = 1/265 (0%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNW 105
           EELE++LI +D G   A KIV+ +     A  V S + +   +   I ++L    +    
Sbjct: 61  EELEEVLISADFGPRTALKIVDRIREGVKAGRVKSAEDIRASLKAAIVELLTARGRSSEL 120

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               RP V+L+VGVNG GKTT +GK++ K    G KV L  GDTFR+AA +QL  W+ R 
Sbjct: 121 KLQGRPAVVLIVGVNGAGKTTTVGKIAYKYGKEGAKVFLIPGDTFRAAAAEQLAEWSRRA 180

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
            A       G+   A+      +  +   D++++DTAGRLH    LM  +      +   
Sbjct: 181 GATIGAFREGARPQAVIASRTCKDASDVYDLILVDTAGRLHTAYKLMEELALCKAAVSNA 240

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P  P   L VLD TTG N L Q + F+     +GLI+TK+DGTARGG ++ +V    +P
Sbjct: 241 LPGQPDETLLVLDGTTGLNMLNQAKEFNEAVRLSGLILTKLDGTARGGAVVSVVDQLGLP 300

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVI 310
           V F+GVGE   DL+PF  + F+  +
Sbjct: 301 VKFIGVGETAEDLQPFDPEAFAEAL 325


>gi|330836508|ref|YP_004411149.1| signal recognition particle-docking protein FtsY [Spirochaeta
           coccoides DSM 17374]
 gi|329748411|gb|AEC01767.1| signal recognition particle-docking protein FtsY [Spirochaeta
           coccoides DSM 17374]
          Length = 288

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/287 (38%), Positives = 164/287 (57%), Gaps = 8/287 (2%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           F S  +KLK     +  ++  D+G  EELED LI SD+G  ++ +I +  + ++ AK   
Sbjct: 2   FKSLGMKLKA----LFGAKTYDEGFFEELEDTLIESDLGPRLSMEISD--MVRQEAKSGK 55

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           + +   D    +  +L     P+ +  +  P V LV+GVNGVGKTT I KL+      G 
Sbjct: 56  L-KTHADFLRFVSDILKEKVAPWVYQPASSPQVFLVLGVNGVGKTTTIAKLAYHFHLQGK 114

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           KV+LAA DTFR+AA DQL++ A+R     V    GSD  A+ Y+A   AQA+  D++++D
Sbjct: 115 KVLLAAADTFRAAAADQLELHAERIGVRIVRQADGSDPGAVVYDAITSAQARHEDIILVD 174

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           TAGR+HN   L+  + K+ +++   +  A  +    VLDATTGQNAL Q E+FH      
Sbjct: 175 TAGRMHNKENLLRELQKIDKIIANKNISADSYKKFLVLDATTGQNALSQAELFHQAVKLD 234

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            +I+TK D  A+GG +I I     +P+ ++G GE   DLE F A+ F
Sbjct: 235 AVILTKYDSAAKGGTVIRIGEKLGLPIAYVGTGEKYTDLESFNAEKF 281


>gi|13541363|ref|NP_111051.1| Signal recognition particle GTPase [Thermoplasma volcanium GSS1]
 gi|14324747|dbj|BAB59674.1| signal recognition particle protein dpa [Thermoplasma volcanium
           GSS1]
          Length = 287

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/278 (35%), Positives = 158/278 (56%), Gaps = 9/278 (3%)

Query: 27  KLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
           K K+ + +I S +++D D   EE+   LI +D+ V  A+ +    L +   KD      L
Sbjct: 4   KFKKKLVEIFSRKKIDPDEAAEEIPLKLIEADVSVETAEYLGN--LVRNKLKDRDFSGEL 61

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
            DV     K ++ + KP   + + +P VI+ +G+NG GKTT IGK++K +   G  V+L+
Sbjct: 62  NDVLYASIKEILAIPKPDILNVNKKPFVIMFLGINGTGKTTTIGKVAKYLKSKGKSVVLS 121

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR+ AI+QL +       + +  E GSD +++A++A + A+A+ +D +++DTAGR+
Sbjct: 122 ASDTFRAGAIEQLSMIGKEIGVEVIKHEKGSDPSSVAFDAIQHAKARNIDYVLVDTAGRM 181

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           + N  LM  + K+ RV        P   L VLDA  GQ+++ Q   FH   G   +I+TK
Sbjct: 182 NTNKNLMDEMKKIKRV------SNPDITLLVLDAVAGQDSINQARTFHENVGFDAVIVTK 235

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +D  ARGG ++ I    + PV F  VG+G++D+  F A
Sbjct: 236 LDTDARGGSILSIYHDLRKPVLFACVGQGLDDIMQFDA 273


>gi|317012573|gb|ADU83181.1| cell division protein (ftsY) [Helicobacter pylori Lithuania75]
          Length = 293

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 27  KEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 80

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 81  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 140

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 141 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 200

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 201 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 260

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           + +LG+GE  +DL  F  + F
Sbjct: 261 ILYLGMGEKEDDLIAFDEERF 281


>gi|153951547|ref|YP_001397701.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152938993|gb|ABS43734.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 288

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/253 (36%), Positives = 145/253 (57%), Gaps = 10/253 (3%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           LE++L+ +D+   + ++I+  L  +   K   ++RV+           +   K  N +  
Sbjct: 31  LEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVM-------GSYFLYEKKETNQE-- 81

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P V L++GVNG GKTT I KL+    +   KV+L A DTFR+ AI+QLK+WA +   D
Sbjct: 82  -KPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVD 140

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V +  G D +A+A++   +A+AK  D +IIDTAGRL N   L   + K++R+  +    
Sbjct: 141 IVLTAQGHDPSAVAFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEG 200

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH  + VLD T G   + Q + F+ +    G+I+TK+DGTA+GG L  I    ++P+++
Sbjct: 201 APHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGVLFSIARELELPIFY 260

Query: 289 LGVGEGINDLEPF 301
           +GVGE   DL  F
Sbjct: 261 VGVGESKEDLIEF 273


>gi|87123338|ref|ZP_01079189.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           RS9917]
 gi|86169058|gb|EAQ70314.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           RS9917]
          Length = 473

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/317 (34%), Positives = 177/317 (55%), Gaps = 12/317 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V+ E + W+ +L +G   T       + + +    L   V ++LE LL+R+D GV    
Sbjct: 159 QVSLEEIDWLGRLRRGLEKTRQGFVTSLLETLGDDPLTPEVVDDLEALLLRADAGVQATD 218

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHVILVV 117
           +++E L  +   + V     +  + E +  +L    +P              R ++ L+V
Sbjct: 219 QVMEALRRRLNEEVVDPGEGIRFLKEQLRGLL---EQPIQASGVELLAPERGRLNIWLMV 275

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGS 176
           GVNGVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+ +WA+R+    + +    +
Sbjct: 276 GVNGVGKTTTLGKLANLAVRSGYSALVAAADTFRAAAVQQVTVWAERSEVPVISNPSANA 335

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A   A++K VD+L++DTAGRL     LM  + K+ R++ RL P A    L V
Sbjct: 336 DPAAVVFDAIGAARSKGVDLLLVDTAGRLQTKHNLMEELQKIRRIVDRLAPEARVESLLV 395

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA+ GQN L+Q   F   A  TG+++TK+DGTARGG  + +     +P+ F+G GEGI 
Sbjct: 396 LDASQGQNGLKQAMAFAKAADLTGVVITKLDGTARGGVALAVASEAGLPIRFIGAGEGIR 455

Query: 297 DLEPFVAKDF-SAVITG 312
           DL PF + +F  A++ G
Sbjct: 456 DLRPFNSFEFVEALLAG 472


>gi|308182922|ref|YP_003927049.1| cell division protein (ftsY) [Helicobacter pylori PeCan4]
 gi|308065107|gb|ADO06999.1| cell division protein (ftsY) [Helicobacter pylori PeCan4]
          Length = 292

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 26  KEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 79

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 80  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 139

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 140 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 199

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 200 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 259

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           + +LG+GE  +DL  F  + F
Sbjct: 260 ILYLGMGEKEDDLIAFDEERF 280


>gi|320449647|ref|YP_004201743.1| signal recognition particle-docking protein FtsY [Thermus
           scotoductus SA-01]
 gi|320149816|gb|ADW21194.1| signal recognition particle-docking protein FtsY [Thermus
           scotoductus SA-01]
          Length = 304

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/315 (41%), Positives = 178/315 (56%), Gaps = 24/315 (7%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  +L  G A T    +E +   I      + V EELE  L+ +D+G+    +  EEL
Sbjct: 1   MGFFDRLKAGLAKT----RETLLKAIPWGGSPEEVLEELEMALLAADVGL----EATEEL 52

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNW-DFSHRPH----------VILVVG 118
           L +  A   S ++ L + V E + +ML P  +         RP           V+LVVG
Sbjct: 53  LAEVRA---SGRKDLKEAVKEKLVQMLEPDERRATLRKLGFRPQNPKPIEPQGHVVLVVG 109

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT I KL +   + G KVM  AGDTFR+A   QL  W  R     +    G+D 
Sbjct: 110 VNGVGKTTTIAKLGRYYRNLGKKVMFCAGDTFRAAGGAQLSEWGKRLDIPVIQGPEGADP 169

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AALA++A    +A+  D+L++DTAGRLH    LM  + K+ R + + DP  P  V  VLD
Sbjct: 170 AALAFDAASARKARGYDLLLVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD 229

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQN L Q + FH   G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL
Sbjct: 230 AVTGQNGLEQAKRFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIRFIGVGEGPDDL 289

Query: 299 EPFVAKDF-SAVITG 312
           +PF A+ F  A++ G
Sbjct: 290 QPFDAEAFVEALLEG 304


>gi|288923592|ref|ZP_06417702.1| signal recognition particle-docking protein FtsY [Frankia sp.
           EUN1f]
 gi|288345054|gb|EFC79473.1| signal recognition particle-docking protein FtsY [Frankia sp.
           EUN1f]
          Length = 438

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/276 (39%), Positives = 160/276 (57%), Gaps = 12/276 (4%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL------LTKRYAKDVSVQRVLYDVSE 90
           S   LD+   E++E  L+ +D+GVA   ++V+ L      L  R A D   + +L D  E
Sbjct: 160 SGDNLDEEAWEDVESTLLVADVGVAATAEMVDALRERTKVLGARTAADA--RAMLRD--E 215

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L+ ++   + +        RP ++LVVGVNG GKTT  GK+++ +   G  V+L A DTF
Sbjct: 216 LLAQVGTSMDRSLRTSAPDRPAILLVVGVNGTGKTTTCGKIARLLVAEGRSVVLGAADTF 275

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA DQL+ W  R  A  V    G D A++A++A K+      D +++DTAGRLH    
Sbjct: 276 RAAAADQLETWGGRVGATTVRGPEGGDPASVAFDAVKRGIDDGADTVLVDTAGRLHTKVG 335

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + K+ RV+ +  P     VL VLD+TTGQNAL Q  +F      TG+++TKMDGTA
Sbjct: 336 LMDELSKIKRVVGKQSPV--DEVLLVLDSTTGQNALTQARVFTEAVDITGVVLTKMDGTA 393

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +GG +I +     +PV  +G+GEG +DL PF A+ F
Sbjct: 394 KGGIVIAVQRELGVPVKLIGLGEGPDDLAPFEAEAF 429


>gi|86742277|ref|YP_482677.1| signal recognition particle-docking protein FtsY [Frankia sp. CcI3]
 gi|86569139|gb|ABD12948.1| signal recognition particle-docking protein FtsY [Frankia sp. CcI3]
          Length = 414

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/278 (39%), Positives = 159/278 (57%), Gaps = 12/278 (4%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-- 98
           LD+   E++E  L+ +D+GV    ++V  L   R    V   R   DV E++   L+   
Sbjct: 140 LDEDAWEDVEATLLLADVGVTATTELVAAL---RERTKVLGARTPADVREMLRDELLAQI 196

Query: 99  ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                +        RP V+LVVGVNG GKTT  GK+++ +   G  V+L A DTFR+AA 
Sbjct: 197 GTTTDRSLRTTAPDRPAVVLVVGVNGTGKTTTCGKIARLLVADGRTVVLGAADTFRAAAA 256

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           DQL+ W +R  A  V    G D A++A++A +Q     VD ++IDTAGRLH  + LM  +
Sbjct: 257 DQLQTWGERVGAITVRGAEGGDPASVAFDAVRQGTQSGVDTVLIDTAGRLHTKAGLMDEL 316

Query: 216 GKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
            K+ RV+ +   H P   VL VLDATTGQNAL Q ++F      TG+++TK+DGTA+GG 
Sbjct: 317 AKIKRVVGK---HGPVDEVLLVLDATTGQNALVQAQVFTQAVDLTGVVLTKLDGTAKGGI 373

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +I +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 374 VIAVQRELGMPVKLIGLGEGPDDLAPFEPEAFVDALLG 411


>gi|293389071|ref|ZP_06633544.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis S613]
 gi|291081589|gb|EFE18552.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis S613]
          Length = 172

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 110/160 (68%)

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A+ ++ DVL++DTAGRL N
Sbjct: 2   DTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERAKTEQADVLLVDTAGRLQN 61

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
              LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q + F      TGL++TK+D
Sbjct: 62  KVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLD 121

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           GTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 122 GTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 161


>gi|188524093|ref|ZP_02557344.2| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198273332|ref|ZP_03205868.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|225550674|ref|ZP_03771623.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
 gi|195659882|gb|EDX53262.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198249852|gb|EDY74632.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|225379828|gb|EEH02190.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
          Length = 351

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 171/294 (58%), Gaps = 7/294 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I K  +G   +S  L   I ++ +    +++   E LE++LI  D+G     KI+E +  
Sbjct: 41  INKFNEGLRKSSSALTNAINELATKYIDINEEWYEHLEEVLIGYDVGYVATNKIIESIRN 100

Query: 73  KRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +   + V+    ++ ++ D   + +     ++   N    ++ +V+LVVGVNGVGKTT I
Sbjct: 101 EMIYQKVNDPELIKSIIIDKIFIYYIQDTEINTAINLK-ENQTNVVLVVGVNGVGKTTSI 159

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFK 187
            K++KK  D   KV+L AGDTFR+ A++QLK+WA R   D  + ++ G D A++ Y   K
Sbjct: 160 AKITKKFIDENKKVLLVAGDTFRAGAVEQLKVWAQRLGVDIELPNKEGQDPASVIYAGVK 219

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +   +K D++I DT+GRL N   LM  + K+  V+ + D HAPH  L VLDAT GQ+ + 
Sbjct: 220 KGYEQKYDLVICDTSGRLQNKINLMNELKKIHDVIHKFDEHAPHETLLVLDATQGQSGIN 279

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           Q + F+ V   +G+I+TKMD T+RGG ++ I     IPV  +G+GE ++DL  F
Sbjct: 280 QAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLDDLSVF 333


>gi|109947230|ref|YP_664458.1| cell division protein [Helicobacter acinonychis str. Sheeba]
 gi|109714451|emb|CAJ99459.1| cell division protein [Helicobacter acinonychis str. Sheeba]
          Length = 293

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 148/261 (56%), Gaps = 6/261 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + +++ L      K + V  + +   E  +       K    
Sbjct: 27  KEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 80

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W  + 
Sbjct: 81  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGKKL 140

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 141 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 200

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 201 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 260

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           + +LG+GE  +DL  F  + F
Sbjct: 261 ILYLGMGEKEDDLIAFDEECF 281


>gi|33239462|ref|NP_874404.1| Signal recognition particle GTPase, FtsY [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33236987|gb|AAP99056.1| Signal recognition particle GTPase, FtsY [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 431

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 178/316 (56%), Gaps = 21/316 (6%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV--- 60
           + ++ + ++W+ +L +G   T       + D      L     +ELE LL+RSD+GV   
Sbjct: 116 ENISLDEINWLSRLQQGLEKTRKGFVTDLLDKFGDDPLTPETLDELETLLLRSDVGVDAT 175

Query: 61  -----AVAQKIVEELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
                A+ +++ EE+L      R+ K+   + V   +      +LMP     N       
Sbjct: 176 DQIINALRKRLNEEVLDSKEGLRFLKEQLCKIVDQPIKNSGKTLLMPSENSLN------- 228

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            + L+VGVNGVGKTT +GKL+     +G   ++AA DTFR+AA++Q+K+W +R+    V 
Sbjct: 229 -IWLIVGVNGVGKTTTLGKLANLALRSGFSALIAAADTFRAAAVEQVKVWGERSGVSVVA 287

Query: 172 SEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
           +E   +D AA+ ++A   A++KK+++L++DTAGRL   + LM  + K+ +++ RL P A 
Sbjct: 288 NETPNADPAAIVFDAIGAAKSKKIELLLVDTAGRLQTKNNLMEELTKVRKIIDRLAPEAN 347

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VLDAT GQN L Q   F   A  TG+++TK+DG+ARGG    +     +P+ F+G
Sbjct: 348 VESLLVLDATQGQNGLSQAMSFAKSANLTGVVITKLDGSARGGVAFAVSSQTNLPIRFIG 407

Query: 291 VGEGINDLEPFVAKDF 306
            GEGI DL PF + +F
Sbjct: 408 AGEGIRDLRPFNSFEF 423


>gi|256784964|ref|ZP_05523395.1| docking protein [Streptomyces lividans TK24]
          Length = 391

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 181/315 (57%), Gaps = 13/315 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LDD   EE+ED L+ +D+GV   Q
Sbjct: 82  EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 141

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVG 118
           ++VE L   R    V   R   ++  L+ + L+ L  P           + +P +++VVG
Sbjct: 142 ELVERL---RERVKVLGTRTPEELRTLLREELITLVGPDMDREVKTEPATSKPGIVMVVG 198

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D 
Sbjct: 199 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDP 258

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++A++A K+ +    DV++IDTAGRLH  + LM  +GK+ RV+++   HAP   VL VL
Sbjct: 259 ASVAFDAVKEGKEMGSDVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPLDEVLLVL 315

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +D
Sbjct: 316 DATTGQNGLIQARVFAEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADD 375

Query: 298 LEPFVAKDFSAVITG 312
           L PF    F   + G
Sbjct: 376 LAPFEPAAFVDALIG 390


>gi|108798923|ref|YP_639120.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           MCS]
 gi|119868038|ref|YP_937990.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           KMS]
 gi|108769342|gb|ABG08064.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           MCS]
 gi|119694127|gb|ABL91200.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           KMS]
          Length = 466

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 115/273 (42%), Positives = 163/273 (59%), Gaps = 13/273 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDV--SELIHKMLMPL 99
           EE+ED L+ +D+G  V + +V  L T R A D        + VL DV  SEL  +M   +
Sbjct: 200 EEIEDTLLIADLGPVVTESVVAALRT-RMASDAVRTEADARAVLRDVLISELHPEMDRSI 258

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
               + D   +P V+LVVGVNG GKTT +GKL++ +   G +V+L A DTFR+AA DQL+
Sbjct: 259 RALPHAD---KPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQ 315

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            WA R  A+ V    G+D A++A++A  +      DV+ IDTAGRLH  + LM  +GK+ 
Sbjct: 316 TWASRVGAEVVRGPEGADPASVAFDAVSKGIENGADVVAIDTAGRLHTKTGLMDELGKVK 375

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV+++    A   VL VLDAT GQN+L Q  +F  V   TG+++TK+DGTA+GG +  + 
Sbjct: 376 RVVEKR--AAVDEVLLVLDATIGQNSLPQARVFAEVVKITGVVLTKLDGTAKGGIVFRVQ 433

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
               +PV  +G+GEG +DL PF    F   + G
Sbjct: 434 QELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 466


>gi|171741540|ref|ZP_02917347.1| hypothetical protein BIFDEN_00625 [Bifidobacterium dentium ATCC
           27678]
 gi|283455129|ref|YP_003359693.1| signal recognition particle [Bifidobacterium dentium Bd1]
 gi|171277154|gb|EDT44815.1| hypothetical protein BIFDEN_00625 [Bifidobacterium dentium ATCC
           27678]
 gi|283101763|gb|ADB08869.1| FtsY signal recognition particle [Bifidobacterium dentium Bd1]
          Length = 398

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/306 (38%), Positives = 177/306 (57%), Gaps = 19/306 (6%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S I++L    A +     + + +I++   L +   E++ED L+ +D+G   ++++VEEL 
Sbjct: 95  SRIQRLKAKLAKSGNPFGKVLFNILAKDHLSESDWEDVEDTLLLADVGAEASEQLVEEL- 153

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----------PHVILVVGVNG 121
             R    +S Q    D SE+   +   L K    D   R          P VI++VGVNG
Sbjct: 154 --RNDARISGQ---SDPSEVRKALKDKLLKLVGTDTDRRLNADKEGANKPSVIIMVGVNG 208

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAA 180
            GKTT  GKL++     G +VM+ A DTFR+AA DQL+ W  +     V S+  G+D A+
Sbjct: 209 TGKTTTAGKLARLFVADGKQVMMGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPAS 268

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A+EA +QA+    DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDAT
Sbjct: 269 VAFEASEQAKETHADVLIIDTAGRLQNKANLMDELGKIRRVTEKNLPV--DEVLLVLDAT 326

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL P
Sbjct: 327 TGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAP 386

Query: 301 FVAKDF 306
           F  + F
Sbjct: 387 FDPEGF 392


>gi|13357698|ref|NP_077972.1| SRP family GTP-binding protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170762333|ref|YP_001752224.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|171920430|ref|ZP_02931745.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|183508691|ref|ZP_02689930.2| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|186701943|ref|ZP_02554397.2| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
 gi|11279276|pir||D82930 SRP family of GTP-binding proteins, cell division protein UU141
           [imported] - Ureaplasma urealyticum
 gi|6899100|gb|AAF30547.1|AE002114_14 SRP family of GTP-binding proteins - cell division protein
           [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827910|gb|ACA33172.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|171902878|gb|EDT49167.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|182675613|gb|EDT87518.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|186700694|gb|EDU18976.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
          Length = 351

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 171/294 (58%), Gaps = 7/294 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I K  +G   +S  L + I ++ +    +D+   E LE++LI  D+G     KI+E +  
Sbjct: 41  INKFNEGLRKSSSALTDAINELAVKYIDIDERWYEHLEEVLISYDVGYVATNKIIESIRN 100

Query: 73  KRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +   + V+    ++ ++ D   + +     ++   N    ++ +V+LVVGVNGVGKTT I
Sbjct: 101 EMIYQKVNDPDLIKSIIIDKIFIYYIQDTEINTAINLK-ENQTNVVLVVGVNGVGKTTSI 159

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFK 187
            K++KK  D   KV+L AGDTFR+ A++QLK+WA R   D  + ++ G D A++ Y   K
Sbjct: 160 AKITKKFIDENKKVLLVAGDTFRAGAVEQLKVWAQRLGVDIELPNKEGQDPASVIYAGVK 219

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +   +K D++I DT+GRL N   LM  + K+  V+ + D +APH  L VLDAT GQ+ + 
Sbjct: 220 KGYEQKYDLVICDTSGRLQNKINLMNELKKIHDVIHKFDEYAPHETLLVLDATQGQSGIN 279

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           Q + F+ V   +G+I+TKMD T+RGG ++ I     IPV  +G+GE + DL  F
Sbjct: 280 QAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLEDLSVF 333


>gi|306823813|ref|ZP_07457187.1| cell division protein FtsY [Bifidobacterium dentium ATCC 27679]
 gi|304552811|gb|EFM40724.1| cell division protein FtsY [Bifidobacterium dentium ATCC 27679]
          Length = 398

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 118/306 (38%), Positives = 177/306 (57%), Gaps = 19/306 (6%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S I++L    A +     + + +I++   L +   E++ED L+ +D+G   ++++VEEL 
Sbjct: 95  SRIQRLKAKLAKSGNPFGKVLFNILAKDHLSESDWEDVEDTLLLADVGAEASEQLVEEL- 153

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----------PHVILVVGVNG 121
             R    +S Q    D SE+   +   L K    D   R          P VI++VGVNG
Sbjct: 154 --RNDARISGQ---SDPSEVRKALKDKLLKLVGTDTDRRLNADKEGANKPSVIIMVGVNG 208

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAA 180
            GKTT  GKL++     G +VM+ A DTFR+AA DQL+ W  +     V S+  G+D A+
Sbjct: 209 TGKTTTAGKLARLFVADGKQVMMGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPAS 268

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A+EA +QA+    DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDAT
Sbjct: 269 VAFEASEQAKETHADVLIIDTAGRLQNKANLMDELGKIRRVTEKNLPV--DEVLLVLDAT 326

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL P
Sbjct: 327 TGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAP 386

Query: 301 FVAKDF 306
           F  + F
Sbjct: 387 FDPEGF 392


>gi|126434523|ref|YP_001070214.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           JLS]
 gi|126234323|gb|ABN97723.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           JLS]
          Length = 458

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 115/273 (42%), Positives = 163/273 (59%), Gaps = 13/273 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDV--SELIHKMLMPL 99
           EE+ED L+ +D+G  V + +V  L T R A D        + VL DV  SEL  +M   +
Sbjct: 192 EEIEDTLLIADLGPVVTESVVAALRT-RMASDAVRTEADARAVLRDVLISELHPEMDRSI 250

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
               + D   +P V+LVVGVNG GKTT +GKL++ +   G +V+L A DTFR+AA DQL+
Sbjct: 251 RALPHAD---KPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQ 307

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            WA R  A+ V    G+D A++A++A  +      DV+ IDTAGRLH  + LM  +GK+ 
Sbjct: 308 TWASRVGAEVVRGPEGADPASVAFDAVSKGIENGADVVAIDTAGRLHTKTGLMDELGKVK 367

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV+++    A   VL VLDAT GQN+L Q  +F  V   TG+++TK+DGTA+GG +  + 
Sbjct: 368 RVVEKR--AAVDEVLLVLDATIGQNSLPQARVFAEVVKITGVVLTKLDGTAKGGIVFRVQ 425

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
               +PV  +G+GEG +DL PF    F   + G
Sbjct: 426 QELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 458


>gi|293385098|ref|ZP_06630925.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis R712]
 gi|291077625|gb|EFE14989.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis R712]
          Length = 175

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 110/160 (68%)

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A+ ++ DVL++DTAGRL N
Sbjct: 5   DTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERAKTEQADVLLVDTAGRLQN 64

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
              LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q + F      TGL++TK+D
Sbjct: 65  KVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKLD 124

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           GTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 125 GTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 164


>gi|332673434|gb|AEE70251.1| cell division protein FtsY [Helicobacter pylori 83]
          Length = 297

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 81/197 (41%), Positives = 123/197 (62%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ +   
Sbjct: 89  KPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQV 148

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++   A
Sbjct: 149 ISTKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDA 208

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P+ +L
Sbjct: 209 PFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLPILYL 268

Query: 290 GVGEGINDLEPFVAKDF 306
           G+GE  +DL  F  + F
Sbjct: 269 GMGEKEDDLIAFDEERF 285


>gi|21223936|ref|NP_629715.1| docking protein [Streptomyces coelicolor A3(2)]
 gi|4007739|emb|CAA22423.1| putative prokaryotic docking protein [Streptomyces coelicolor
           A3(2)]
 gi|23345105|gb|AAN17782.1| signal recognition particle receptor FtsY [Streptomyces lividans]
          Length = 412

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 181/315 (57%), Gaps = 13/315 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LDD   EE+ED L+ +D+GV   Q
Sbjct: 103 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 162

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVG 118
           ++VE L   R    V   R   ++  L+ + L+ L  P           + +P +++VVG
Sbjct: 163 ELVERL---RERVKVLGTRTPEELRTLLREELITLVGPDMDREVKTEPATSKPGIVMVVG 219

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D 
Sbjct: 220 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDP 279

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++A++A K+ +    DV++IDTAGRLH  + LM  +GK+ RV+++   HAP   VL VL
Sbjct: 280 ASVAFDAVKEGKEMGSDVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPLDEVLLVL 336

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +D
Sbjct: 337 DATTGQNGLIQARVFAEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADD 396

Query: 298 LEPFVAKDFSAVITG 312
           L PF    F   + G
Sbjct: 397 LAPFEPAAFVDALIG 411


>gi|289768856|ref|ZP_06528234.1| signal recognition particle receptor FtsY [Streptomyces lividans
           TK24]
 gi|289699055|gb|EFD66484.1| signal recognition particle receptor FtsY [Streptomyces lividans
           TK24]
          Length = 412

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 181/315 (57%), Gaps = 13/315 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LDD   EE+ED L+ +D+GV   Q
Sbjct: 103 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 162

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVG 118
           ++VE L   R    V   R   ++  L+ + L+ L  P           + +P +++VVG
Sbjct: 163 ELVERL---RERVKVLGTRTPEELRTLLREELITLVGPDMDREVKTEPATSKPGIVMVVG 219

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D 
Sbjct: 220 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDP 279

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++A++A K+ +    DV++IDTAGRLH  + LM  +GK+ RV+++   HAP   VL VL
Sbjct: 280 ASVAFDAVKEGKEMGSDVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPLDEVLLVL 336

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +D
Sbjct: 337 DATTGQNGLIQARVFAEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADD 396

Query: 298 LEPFVAKDFSAVITG 312
           L PF    F   + G
Sbjct: 397 LAPFEPAAFVDALIG 411


>gi|310828472|ref|YP_003960829.1| signal recognition particle-docking protein FtsY [Eubacterium
           limosum KIST612]
 gi|308740206|gb|ADO37866.1| signal recognition particle-docking protein FtsY [Eubacterium
           limosum KIST612]
          Length = 311

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/254 (42%), Positives = 156/254 (61%), Gaps = 4/254 (1%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
            I SD+G+  A KI E L   R     +  +   DV +L+ +++  + +      +  P 
Sbjct: 46  FILSDLGIETATKITETL---REQIKETKTKAKQDVMDLLRQIMTEMVEVEKHQ-TELPV 101

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           ++LVVGVNGVGKTT I KL++K  D G KVM+AA DTFR+AA +QL +WADR   D + S
Sbjct: 102 IMLVVGVNGVGKTTTIAKLAQKYKDQGKKVMVAAADTFRAAAAEQLDVWADRVGVDIIKS 161

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G+D +++ ++A   A+A+  D+L+ DTAGRLHN   LM  + K+ RV++R        
Sbjct: 162 VQGADPSSVVFDAIGAARARGADILLCDTAGRLHNKVNLMKELEKITRVVEREGQGFSVH 221

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L VLDATTGQNAL Q + F+      G++MTKMDGTA+GG  I I+   ++P+ ++G+G
Sbjct: 222 NLLVLDATTGQNALNQAKTFNDAVHLDGIVMTKMDGTAKGGVAIAIIDELQVPIEYVGIG 281

Query: 293 EGINDLEPFVAKDF 306
           E   DL  F A +F
Sbjct: 282 EKPEDLIDFDAGEF 295


>gi|317178879|dbj|BAJ56667.1| cell division protein [Helicobacter pylori F30]
          Length = 297

 Score =  165 bits (418), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 96/268 (35%), Positives = 150/268 (55%), Gaps = 20/268 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVL-----YDVSELIHKMLMP 98
           +EELE++LI  DI   + + ++  L  L      +V++ R +     YD + L       
Sbjct: 31  KEELEEILIGFDIQYDLIESLLNHLGDLVTPKQLEVALLRFVRGESYYDKTRL------- 83

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
                    + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL
Sbjct: 84  ------KTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQL 137

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++W ++ +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+
Sbjct: 138 QLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKI 197

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            R   +    AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ +
Sbjct: 198 ARTCSKALKDAPFYKFLILDGTQGSSGLIQAKIFHETLALDGVIMTKLDGTSKGGAILSV 257

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +   K+P+ +LG+GE  +DL  F  + F
Sbjct: 258 LYELKLPILYLGMGEKEDDLIAFDEERF 285


>gi|15611767|ref|NP_223418.1| hypothetical protein jhp0700 [Helicobacter pylori J99]
 gi|11386869|sp|Q9ZL80|FTSY_HELPJ RecName: Full=Cell division protein ftsY homolog
 gi|4155255|gb|AAD06275.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helicobacter pylori J99]
          Length = 293

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 93/261 (35%), Positives = 148/261 (56%), Gaps = 6/261 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + +++ L      K + V  + +   E  +       K    
Sbjct: 27  KEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLRFVRGESYY------DKTRLK 80

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 81  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 140

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+     ++
Sbjct: 141 NVQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIAHTCSKV 200

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 201 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 260

Query: 286 VYFLGVGEGINDLEPFVAKDF 306
           + +LG+GE  +DL  F  + F
Sbjct: 261 ILYLGMGEKEDDLIAFDEERF 281


>gi|222824209|ref|YP_002575783.1| signal recognition particle-docking GTPase FtsY [Campylobacter lari
           RM2100]
 gi|222539431|gb|ACM64532.1| signal recognition particle-docking GTPase FtsY [Campylobacter lari
           RM2100]
          Length = 288

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/281 (35%), Positives = 163/281 (58%), Gaps = 22/281 (7%)

Query: 41  LDDGVREELEDL-LIRSDIGVA-------------VAQKIVEELLTKRYAKDVSVQRVLY 86
           L DG+++ LE + LI++D  V              VA +IVEE++      D  V++   
Sbjct: 5   LKDGLKKTLESINLIKADKKVITKELLEEILLEADVAYEIVEEIIYYLPPND-EVKKA-- 61

Query: 87  DVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           D+  ++    +   KP   +F++ +P V L++GVNGVGKTT I K++    + G KV+L 
Sbjct: 62  DLERVMGTYFI-YDKP---EFANAKPFVDLILGVNGVGKTTSIAKIAHLYKENGEKVVLG 117

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR+ AI+QLK+WA +   D + +  G D +A+AY+A  +A AK  D +I+DTAGRL
Sbjct: 118 ACDTFRAGAIEQLKLWAQKLEIDIIATSQGHDPSAVAYDAISKALAKNYDRVILDTAGRL 177

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N   L   + K++R+  +    APH  + VLD T G   + Q + F+ +    G+I+TK
Sbjct: 178 QNQKNLANELEKIVRISNKAMQGAPHRKILVLDGTQGVAGILQAKAFNELVKLDGVIITK 237

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +DGTA+GG L  I    ++P++++GVGE +  +  F  +++
Sbjct: 238 LDGTAKGGALFSIARELELPIFYVGVGEQLEQIYEFNPQEY 278


>gi|116514964|ref|YP_802593.1| hypothetical protein BCc_015 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256818|gb|ABJ90500.1| signal recognition particle receptor [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 346

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 104/278 (37%), Positives = 166/278 (59%), Gaps = 5/278 (1%)

Query: 32  ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---EELLTKRYAKDVSVQRVLYDV 88
           + +I  ++ LD    ++LED+L+ SD GV   +KI+   +E + K    D  + +V +  
Sbjct: 63  LKNIFLNKNLDKKFFKKLEDILLSSDFGVQSTKKILNLFKEKIKKNNITDTKIAKVYF-- 120

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            E++ K+L   SK  + +      +ILVVG+NGVGKTT + KL+    + G  V+L+A D
Sbjct: 121 KEILLKILKKSSKFSDKNNYSNLLIILVVGINGVGKTTAVVKLANYYKNLGKSVILSACD 180

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFRSAAIDQL    +  + +     IGSD +++A+++   A+ KK+D++IIDTAGR+HN 
Sbjct: 181 TFRSAAIDQLIDLGNLYNIEIFYKSIGSDPSSVAFDSIIYAKKKKIDIVIIDTAGRMHNK 240

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             L+  + KM RV+K+    A +    V+DA  GQN+++Q ++F +    +G I+TK+D 
Sbjct: 241 MHLIQELKKMNRVIKKCCSTAFYKTYLVIDAGIGQNSIQQAKIFSSEINISGSIITKLDS 300

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TA+GG +  I+   KIP+ ++  GE I D   F  K F
Sbjct: 301 TAKGGIIFSIINDLKIPICYISAGEKITDFNIFDYKYF 338


>gi|219685383|ref|ZP_03540202.1| signal recognition particle-docking protein FtsY [Borrelia garinii
           Far04]
 gi|219673156|gb|EED30176.1| signal recognition particle-docking protein FtsY [Borrelia garinii
           Far04]
          Length = 281

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 165/274 (60%), Gaps = 9/274 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I ++  S +  + + E LED+L+ SDI   +   I+ +L TK   K+ + + ++  + 
Sbjct: 5   EKIKNLFKSNQ-QENIIENLEDILLESDINNEIVIDIINKL-TKE--KNKNEKTIIEKLK 60

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+   +    K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A DT
Sbjct: 61  ELLSNYINI--KKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAI+Q+K++ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N  
Sbjct: 118 FRAAAIEQMKVYGEQIGIKIISQNQGSDPSAVIFDSISSAKIKNYDALIIDTAGRLQNKE 177

Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            L+  + K+  V LK++ + +  +  + V+D+T G+N   Q E+F+   G  G+I+TK+D
Sbjct: 178 NLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNTNSQAEIFNKAIGIDGIIITKLD 237

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            ++R G +I I    + PVYF   GE + D++ F
Sbjct: 238 SSSRAGAIINISKILEKPVYFTTFGEKLEDIKEF 271


>gi|78778395|ref|YP_396507.1| signal recognition particle-docking protein FtsY [Prochlorococcus
           marinus str. MIT 9312]
 gi|78711894|gb|ABB49071.1| signal recognition particle-docking protein FtsY [Prochlorococcus
           marinus str. MIT 9312]
          Length = 430

 Score =  165 bits (418), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 109/315 (34%), Positives = 180/315 (57%), Gaps = 21/315 (6%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ + + W+ KL KG   T       + D +    L     ++LE LLIR+D+G+    
Sbjct: 116 QISIDEIDWLTKLRKGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDSTD 175

Query: 65  KIVEELLTKRYAK----DVSVQRVLYDVSELIHK--------MLMPLSKPFNWDFSHRPH 112
           K++  L TK   +    +  ++ +  ++  ++ K        +L+P     N        
Sbjct: 176 KVISSLRTKLNEEVVGGEAGIKFLKKELKLIVDKPIKNSGTDLLIPQKGKLN-------- 227

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V L+VGVNGVGKTT +GKL+   S +  K ++AA DTFR+AA++QLK+W +R++ D + +
Sbjct: 228 VWLLVGVNGVGKTTTLGKLAYLSSRSNYKTLIAAADTFRAAAVEQLKVWGERSNVDVISN 287

Query: 173 EI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +   +D AA+ ++A   AQ + VD+L++DTAGRL   + LM  + K+ +++ +  P A  
Sbjct: 288 QSKNADPAAVVFDAINSAQKRNVDLLLVDTAGRLQTKNNLMDELAKIKKIIDKKVPDAII 347

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L VLDA+ GQN L+Q + F   A  +G I+TK+DGT+RGG  + +     +P+ F+G 
Sbjct: 348 ESLLVLDASQGQNGLKQAKSFAKSANLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIGA 407

Query: 292 GEGINDLEPFVAKDF 306
           GEGI DL PF + +F
Sbjct: 408 GEGIKDLRPFNSYEF 422


>gi|297202635|ref|ZP_06920032.1| signal recognition particle-docking protein FtsY [Streptomyces
           sviceus ATCC 29083]
 gi|197713210|gb|EDY57244.1| signal recognition particle-docking protein FtsY [Streptomyces
           sviceus ATCC 29083]
          Length = 403

 Score =  165 bits (418), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 121/315 (38%), Positives = 184/315 (58%), Gaps = 13/315 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LDD   EE+ED+L+ +D+GVA  Q
Sbjct: 94  EVPEPTAGRLVRLRTRLSRSQNALGKGLLTLLSREHLDDDTWEEIEDILLTADVGVAPTQ 153

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFSHR-PHVILVVG 118
           ++V+ L   R    V   R   ++  L+   L+ L      +    +   R P +++VVG
Sbjct: 154 ELVDGL---RERVKVLGTRTPDELRGLLRAELLKLVGTEVDRTVRTEPEERKPGIVMVVG 210

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D 
Sbjct: 211 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDP 270

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++A++A K+ +   VDV++IDTAGRLH  + LM  +GK+ RV+++   HAP   VL VL
Sbjct: 271 ASVAFDAVKEGKEMGVDVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPLDEVLLVL 327

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +D
Sbjct: 328 DATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADD 387

Query: 298 LEPFVAKDFSAVITG 312
           L PF  + F   + G
Sbjct: 388 LAPFEPEAFVDALIG 402


>gi|254994056|ref|ZP_05276246.1| SRP receptor alpha-subunit [Listeria monocytogenes FSL J2-064]
          Length = 174

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 82/161 (50%), Positives = 111/161 (68%)

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           AGDTFR+ AIDQL++W +RT  D +    GSD AA+ ++A + A+A+K DVL+ DTAGRL
Sbjct: 1   AGDTFRAGAIDQLEVWGERTGVDVIKQAEGSDPAAVMFDAVQAAKARKADVLLCDTAGRL 60

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N   LM  + K+ RV+ R  P+APH VL VLDATTGQNA  Q + F      TG+I+TK
Sbjct: 61  QNKVNLMNELEKVKRVITREIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTK 120

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +DGTA+GG +I I     IPV F+G+GE ++DL+ F A ++
Sbjct: 121 LDGTAKGGIVIAIRNELDIPVKFVGLGEQMDDLQAFDANEY 161


>gi|171920824|ref|ZP_02932001.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|195867735|ref|ZP_03079736.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|171903592|gb|EDT49881.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|195660590|gb|EDX53846.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
          Length = 351

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 170/294 (57%), Gaps = 7/294 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I K  +G   +S  L   I ++ +    +++   E LE++LI  D+G     KI+E +  
Sbjct: 41  INKFNEGLRKSSSALTNAINELATKYIDINEEWYEHLEEVLIGYDVGYVATNKIIESIRN 100

Query: 73  KRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +   + V+    ++ ++ D   + +     +S   N    ++ +V+LVVGVNGVGKTT I
Sbjct: 101 EMIYQKVNDPELIKSIIIDKIFIYYIQDTEISTEINLK-QNQTNVVLVVGVNGVGKTTSI 159

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFK 187
            K++KK  +   KV+L AGDTFR+ A++QLK+WA R + D     + G D A++ Y   K
Sbjct: 160 AKITKKFINENKKVLLVAGDTFRAGAVEQLKVWAQRLNVDIELPIKEGQDPASVIYAGVK 219

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +   +K D++I DT+GRL N   LM  + K+  V+ + D HAPH  L VLDAT GQ+ + 
Sbjct: 220 KGYEQKYDLVICDTSGRLQNKINLMNELKKIHDVIHKFDEHAPHETLLVLDATQGQSGIN 279

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           Q + F+ V   +G+I+TKMD T+RGG ++ I     IPV  +G+GE ++DL  F
Sbjct: 280 QAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLDDLSVF 333


>gi|309802108|ref|ZP_07696218.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           dentium JCVIHMP022]
 gi|308221309|gb|EFO77611.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           dentium JCVIHMP022]
          Length = 398

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 177/306 (57%), Gaps = 19/306 (6%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S I++L    A +     + + +I++   L +   E++ED L+ +D+G   ++++VEEL 
Sbjct: 95  SRIQRLKAKLAKSGNPFGKVLFNILAKDHLSESDWEDVEDTLLLADVGAEASEQLVEEL- 153

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----------PHVILVVGVNG 121
             R    +S Q    D SE+   +   L K    D   R          P VI++VGVNG
Sbjct: 154 --RNDARISGQ---SDPSEVRKALKDKLLKLVGTDTDRRLNADKEGANKPSVIIMVGVNG 208

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAA 180
            GKTT  GKL++     G +VM+ A DTFR+AA DQL+ W  +     V S+  G+D A+
Sbjct: 209 TGKTTTAGKLARLFVADGKQVMMGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPAS 268

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A+EA +QA+    DV+IIDTAGRL N + LM  +GK+ RV ++  P     VL VLDAT
Sbjct: 269 VAFEASEQAKETHADVIIIDTAGRLQNKANLMDELGKIRRVTEKNLPV--DEVLLVLDAT 326

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL P
Sbjct: 327 TGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAP 386

Query: 301 FVAKDF 306
           F  + F
Sbjct: 387 FDPEGF 392


>gi|123967546|ref|YP_001008404.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. AS9601]
 gi|123197656|gb|ABM69297.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. AS9601]
          Length = 429

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 180/316 (56%), Gaps = 21/316 (6%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
            +++ + + W+ KL +G   T       + D +    L     ++LE LLIR+D+G+   
Sbjct: 114 NQISIDEIDWLTKLRRGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDST 173

Query: 64  QKIVEELLTKRYAK----DVSVQRVLYDVSELIHK--------MLMPLSKPFNWDFSHRP 111
            K++  L TK   +    +  ++ +  ++  +I K        +L+P     N       
Sbjct: 174 DKVISSLRTKLNEEVVGGEAGIKFLKKELKLIIDKPIKNSGTDLLVPQKGKLN------- 226

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            V L+VGVNGVGKTT +GKL+   S +  K ++AA DTFR+AA++QLK+W DR++ D + 
Sbjct: 227 -VWLLVGVNGVGKTTTLGKLAYLSSKSNYKTLIAAADTFRAAAVEQLKVWGDRSNVDVIS 285

Query: 172 SEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
           ++   +D AA+ ++A   A+ + VD+L++DTAGRL   + LM  + K+ +++ +  P A 
Sbjct: 286 NQSKNADPAAVVFDAINSAKKRNVDLLLVDTAGRLQTKNNLMDELAKIKKIIDKKVPDAI 345

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VLDA+ GQN L+Q + F   A  +G I+TK+DGT+RGG  + +     +P+ F+G
Sbjct: 346 VESLLVLDASQGQNGLKQAKSFAKSADLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIG 405

Query: 291 VGEGINDLEPFVAKDF 306
            GEGI DL PF + +F
Sbjct: 406 AGEGIKDLRPFNSYEF 421


>gi|183981799|ref|YP_001850090.1| cell division protein FtsY [Mycobacterium marinum M]
 gi|183175125|gb|ACC40235.1| cell division protein FtsY [Mycobacterium marinum M]
          Length = 458

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 175/306 (57%), Gaps = 13/306 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + +L    A +   L   +  +I    LD+   +++ED L+ +D+G  V + +V +L ++
Sbjct: 159 LERLRGRLAKSQNALGRSVLGLIGGGDLDEDSWQDVEDTLLVADLGPVVTEAVVSQLRSR 218

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTT 126
             + +V   R   D   ++  +L+   +P + D S R       P V+LVVGVNG GKTT
Sbjct: 219 LASGNV---RSEDDARAVLRDVLIKALQP-DMDRSIRALPHPDHPSVLLVVGVNGTGKTT 274

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL++ +   G +V+L A DTFR+AA  QL+ WA R  A+ V    G+D A++A++A 
Sbjct: 275 TVGKLARVLVADGRRVVLGAADTFRAAAAVQLQTWAARVGAEVVSGAEGADPASVAFDAV 334

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +  A   DV++IDTAGRLH    LM  +GK+ RV+ R    A   VL VLDAT GQN L
Sbjct: 335 DKGVAAGADVVLIDTAGRLHTKVGLMDELGKVKRVVTRR--AAVDEVLLVLDATIGQNGL 392

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    F
Sbjct: 393 AQAKVFAEVVDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAF 452

Query: 307 SAVITG 312
              + G
Sbjct: 453 VDALLG 458


>gi|219684854|ref|ZP_03539796.1| signal recognition particle-docking protein FtsY [Borrelia garinii
           PBr]
 gi|219671799|gb|EED28854.1| signal recognition particle-docking protein FtsY [Borrelia garinii
           PBr]
          Length = 281

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 167/279 (59%), Gaps = 9/279 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I ++  S +  + + E LED+L+ SDI   +   I+ +L TK   K+ + + ++  + 
Sbjct: 5   EKIKNLFKSNQ-QENIIENLEDILLESDINNEIVIDIINKL-TKE--KNKNEKTIIEKLK 60

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+   +    K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A DT
Sbjct: 61  ELLSNYINI--KKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAI+Q+K++ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N  
Sbjct: 118 FRAAAIEQMKVYGEQIGIKIISQNQGSDPSAVIFDSISSAKIKNYDALIIDTAGRLQNKE 177

Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            L+  + K+  V LK++ + +  +  + V+D+T G+N   Q E+F+   G  G+I+TK+D
Sbjct: 178 NLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNTNSQAEIFNKAIGIDGIIITKLD 237

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            ++R G +I I    + P+YF   GE + D++ F   ++
Sbjct: 238 SSSRAGAIINISKILEKPIYFTTFGEKLEDIKEFDINEY 276


>gi|124021725|ref|YP_001016032.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9303]
 gi|123962011|gb|ABM76767.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9303]
          Length = 484

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 175/308 (56%), Gaps = 5/308 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++ E + W+ +L +G   T     +G+ + +    L   V ++LE LL+R+D GV   
Sbjct: 169 EKISLEEIDWLGRLRRGLEKTRQGFVKGLLENLGDDPLTPEVLDDLETLLLRADAGVEAT 228

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGV 119
            ++++ L  +   + V     L  + + +  +L    +    D       R ++ L VGV
Sbjct: 229 DQVLDALRRRMNEEVVDPAEGLRFLKQQLCNLLEAPIQDTGTDLLAPERGRLNIWLFVGV 288

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDA 178
           NGVGKTT +GKL+     +G   ++AA DTFR+AA++Q+K+W  R+    +  S   +D 
Sbjct: 289 NGVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVEQVKVWGARSGVPVIANSTANADP 348

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   A++K  D++++DTAGRL     LM  + K+ R++ RL P A    L +LD
Sbjct: 349 AAVVFDAIGAARSKSTDLVLVDTAGRLQTKHNLMEELQKVRRIIDRLAPEARVESLLILD 408

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A+ GQN LRQ   F   A  TG+++TK+DGT+RGG  + +    ++P+ F+G GEGI DL
Sbjct: 409 ASQGQNGLRQAMAFAQAAALTGVVITKLDGTSRGGVALAVASEARLPIRFIGAGEGIRDL 468

Query: 299 EPFVAKDF 306
            PF + +F
Sbjct: 469 RPFNSFEF 476


>gi|33862284|ref|NP_893844.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9313]
 gi|33640397|emb|CAE20186.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9313]
          Length = 484

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 175/308 (56%), Gaps = 5/308 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++ E + W+ +L +G   T     +G+ + +    L   V ++LE LL+R+D GV   
Sbjct: 169 EKISLEEIDWLGRLRRGLEKTRQGFVKGLLENLGDDPLTPEVLDDLETLLLRADAGVEAT 228

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGV 119
            ++++ L  +   + V     L  + + +  +L    +    D       R ++ L VGV
Sbjct: 229 DQVLDALRRRMNEEVVDPAEGLRFLKQQLCNLLEAPIQDTGTDLLAPERGRLNIWLFVGV 288

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGSDA 178
           NGVGKTT +GKL+     +G   ++AA DTFR+AA++Q+K+W  R+    +  S   +D 
Sbjct: 289 NGVGKTTTLGKLANLAVRSGYTALIAAADTFRAAAVEQVKVWGARSGVPVIANSTANADP 348

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   A++K  D++++DTAGRL     LM  + K+ R++ RL P A    L +LD
Sbjct: 349 AAVVFDAIGAARSKSTDLVLVDTAGRLQTKHNLMEELQKVRRIIDRLAPEARVESLLILD 408

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A+ GQN LRQ   F   A  TG+++TK+DGT+RGG  + +    ++P+ F+G GEGI DL
Sbjct: 409 ASQGQNGLRQAMAFAQAAALTGVVITKLDGTSRGGVALAVASEARLPIRFIGAGEGIRDL 468

Query: 299 EPFVAKDF 306
            PF + +F
Sbjct: 469 RPFNSFEF 476


>gi|291004106|ref|ZP_06562079.1| signal recognition particle GTPase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 346

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/280 (38%), Positives = 160/280 (57%), Gaps = 22/280 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---------- 96
           EE+ED L+ +D+G A   +I + L ++  ++ +   R    V  L+ ++L          
Sbjct: 75  EEIEDTLLMADLGAATTTEITDRLRSELASRGL---RTSEQVRALLREVLVDALGPDMQR 131

Query: 97  ----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
               +P   P +     +P V+LVVGVNG GKTT  GKL++ +   G  V+L A DTFR+
Sbjct: 132 SVQALPHGDPAD---GGKPAVVLVVGVNGTGKTTTTGKLARVLVADGRTVLLGAADTFRA 188

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA++QL  W +R  A+ V    G+D A++A+EA  +     VD ++IDTAGRLH  + LM
Sbjct: 189 AAVEQLATWGERVGAEVVRGNEGADPASVAFEAVSRGSDTAVDTVLIDTAGRLHTKTGLM 248

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +GK+ RV+++        VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+G
Sbjct: 249 DELGKVKRVVEKR--AQVDEVLLVLDATTGQNGLTQARVFSDVVDVTGIVLTKLDGTAKG 306

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G +  +     +PV  +G+GEG +DL PF    F   + G
Sbjct: 307 GIVFQVQRELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 346


>gi|118465902|ref|YP_882948.1| signal recognition particle-docking protein FtsY [Mycobacterium
           avium 104]
 gi|254776221|ref|ZP_05217737.1| signal recognition particle-docking protein FtsY [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|118167189|gb|ABK68086.1| signal recognition particle-docking protein FtsY [Mycobacterium
           avium 104]
          Length = 428

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/276 (39%), Positives = 162/276 (58%), Gaps = 9/276 (3%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLM 97
           D+   +++ED L+ +D+G  V + ++ +L  +  + DV  +     VL DV  LI+++  
Sbjct: 157 DEDAWQDVEDTLLVADLGPVVTESVIAQLRGRLASSDVRTEADAKAVLRDV--LINELRP 214

Query: 98  PLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            L +       +  P V+L+VGVNG GKTT +GKL++ +   G +V+L A DTFR+AA D
Sbjct: 215 DLDRSIRALPHADHPSVLLIVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAAD 274

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL+ WA R  A+ V    G+D A++A++A  Q  A   DV++IDTAGRLH    LM  + 
Sbjct: 275 QLQTWASRVGAEVVRGAEGADPASVAFDAVDQGIAAGADVVLIDTAGRLHTKVGLMDELD 334

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+ RV+ R    A   VL VLDAT GQN L Q  +F  V   TG ++TK+DGTA+GG + 
Sbjct: 335 KVKRVVTRR--AAVDEVLLVLDATIGQNGLAQARVFAEVVEITGAVLTKLDGTAKGGIVF 392

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            +     +PV  +G+GEG +DL PF    F   + G
Sbjct: 393 RVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 428


>gi|254167206|ref|ZP_04874059.1| signal recognition particle-docking protein FtsY [Aciduliprofundum
           boonei T469]
 gi|197624062|gb|EDY36624.1| signal recognition particle-docking protein FtsY [Aciduliprofundum
           boonei T469]
          Length = 307

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 22/306 (7%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K   E L +I+K  +   S   +   G+   I+  +L+D + + +E  L+ +D+ V V +
Sbjct: 3   KALKEKLGFIKKKAE---SMDQEFTTGVGKKITEDKLEDFLWD-IEVALMEADVAVDVIE 58

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWD----FSHRPHVIL 115
           KI  +L      K V ++    D+ +++   L       LSK F++D     + RP VI+
Sbjct: 59  KIKNDLKKALVGKKVKLRA---DMGKIVEDTLKKSIKDILSKDFDFDEFIRNAPRPTVIM 115

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            +GVNG GKTTVI KL+K + D G  V++AAGDTFR+ AI+Q+ I  D      +  + G
Sbjct: 116 FLGVNGTGKTTVIAKLAKYLKDKGYSVVMAAGDTFRAGAIEQISIHGDNLGIKVIKHQAG 175

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D AA+ Y+A + A+AK  D ++IDTAGR+  N  LM  + K+ RV K      PH  + 
Sbjct: 176 GDPAAVCYDAIEHAKAKHRDFVLIDTAGRMQTNRNLMEEMKKIKRVAK------PHLTIF 229

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V DA  G +A+ Q + F    G   +I+ K+D  A+GG  + I      P+ FLG G+  
Sbjct: 230 VGDALAGNDAIEQAKKFEEAVGIDAVILNKVDADAKGGAALSIAYELNKPIIFLGNGQKY 289

Query: 296 NDLEPF 301
           +DL  F
Sbjct: 290 DDLMKF 295


>gi|219123971|ref|XP_002182288.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406249|gb|EEC46189.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 298

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/280 (37%), Positives = 164/280 (58%), Gaps = 32/280 (11%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEEL------LTKRYAKD--VSVQRVLYDVSELIHKML 96
           V ++L+D+L+++D+G   A+ IV E+       TK  +KD   S+ R      +LI  + 
Sbjct: 24  VLDDLQDILLQADLGTKTAEDIVAEVKSLREDSTKMLSKDDLKSIMR-----GKLIEALN 78

Query: 97  MPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSA 153
             LS    +       P V+ V+G NG+GKTT IGKL+ ++ + G + V+LAA DTFR+ 
Sbjct: 79  TELSGAIQFSPLVDKTPTVLFVMGANGMGKTTTIGKLAHRLRNEGNQTVLLAACDTFRAG 138

Query: 154 AIDQLKIWADRTSADFV--CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           A++QL+ WA+R   D V   +++ + +A L Y A  +  A+K D +++DT+GRL NN  L
Sbjct: 139 AVEQLQQWAERAQVDMVGPSTKVTTPSAVL-YAALDKGIAEKYDTILVDTSGRLSNNDQL 197

Query: 212 MAGIGKMIRVL-KRL------------DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
            A + KM +V+ KRL            +   PH  L VLDA  G+ AL   ++++   G 
Sbjct: 198 TAELKKMKKVIQKRLSRENDEEGKPLPNLQVPHETLLVLDAAQGRMALDSAKVWNEEIGL 257

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +GLI+TK+DG+ARGG ++ I    ++PV  +GVGEGI DL
Sbjct: 258 SGLILTKLDGSARGGSVVAISRDIQLPVKLIGVGEGIEDL 297


>gi|134102503|ref|YP_001108164.1| signal recognition particle GTPase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915126|emb|CAM05239.1| signal recognition particle GTPase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 503

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/280 (38%), Positives = 160/280 (57%), Gaps = 22/280 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---------- 96
           EE+ED L+ +D+G A   +I + L ++  ++ +   R    V  L+ ++L          
Sbjct: 232 EEIEDTLLMADLGAATTTEITDRLRSELASRGL---RTSEQVRALLREVLVDALGPDMQR 288

Query: 97  ----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
               +P   P +     +P V+LVVGVNG GKTT  GKL++ +   G  V+L A DTFR+
Sbjct: 289 SVQALPHGDPAD---GGKPAVVLVVGVNGTGKTTTTGKLARVLVADGRTVLLGAADTFRA 345

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA++QL  W +R  A+ V    G+D A++A+EA  +     VD ++IDTAGRLH  + LM
Sbjct: 346 AAVEQLATWGERVGAEVVRGNEGADPASVAFEAVSRGSDTAVDTVLIDTAGRLHTKTGLM 405

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +GK+ RV+++        VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+G
Sbjct: 406 DELGKVKRVVEKR--AQVDEVLLVLDATTGQNGLTQARVFSDVVDVTGIVLTKLDGTAKG 463

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G +  +     +PV  +G+GEG +DL PF    F   + G
Sbjct: 464 GIVFQVQRELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 503


>gi|229258562|gb|ACQ45586.1| cell division protein FtsY [Vesicomya sp. mt-II symbiont]
          Length = 194

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/159 (47%), Positives = 110/159 (69%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   VILVVGVNG GKTT+IGKL+K   + G  VMLAAGDTFR+AA++QLK+W +R    
Sbjct: 36  NETFVILVVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGERNQIP 95

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +    G+DAA++ ++A++ AQAK +D+LI DTAGRLH    LM  + K+ RV+ + + +
Sbjct: 96  VIAQTTGADAASVIFDAYQSAQAKNIDILIADTAGRLHTQDNLMQELTKIKRVIAKQNAN 155

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           APH  + ++D  +GQNA+ Q E F+     +G+ +TK+D
Sbjct: 156 APHETMLIIDGGSGQNAINQAEEFNKAVTLSGISITKLD 194


>gi|185178762|ref|ZP_02554787.2| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188518543|ref|ZP_02556795.2| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|209554046|ref|YP_002284564.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|225551231|ref|ZP_03772177.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|184209374|gb|EDU06417.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188997922|gb|EDU67019.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|209541547|gb|ACI59776.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|225379046|gb|EEH01411.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
          Length = 351

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/294 (36%), Positives = 170/294 (57%), Gaps = 7/294 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I K  +G   +S  L   I ++ +    +++   E LE++LI  D+G     KI+E +  
Sbjct: 41  INKFNEGLRKSSSALTNAINELATKYIDINEEWYEHLEEVLIGYDVGYVATNKIIESIRN 100

Query: 73  KRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +   + V+    ++ ++ D   + +     ++   N    ++ +V+LVVGVNGVGKTT I
Sbjct: 101 EMIYQKVNDPELIKSIIIDKIFIYYIQDTEINTEINLK-QNQTNVVLVVGVNGVGKTTSI 159

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFK 187
            K++KK  +   KV+L AGDTFR+ A++QLK+WA R + D     + G D A++ Y   K
Sbjct: 160 AKITKKFINENKKVLLVAGDTFRAGAVEQLKVWAQRLNVDIELPIKEGQDPASVIYAGVK 219

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +   +K D++I DT+GRL N   LM  + K+  V+ + D HAPH  L VLDAT GQ+ + 
Sbjct: 220 KGYEQKYDLVICDTSGRLQNKINLMNELKKIHDVIHKFDEHAPHETLLVLDATQGQSGIN 279

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           Q + F+ V   +G+I+TKMD T+RGG ++ I     IPV  +G+GE ++DL  F
Sbjct: 280 QAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLDDLSVF 333


>gi|315445095|ref|YP_004077974.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           Spyr1]
 gi|315263398|gb|ADU00140.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           Spyr1]
          Length = 471

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 168/303 (55%), Gaps = 11/303 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    A +   L   +  +I    LD+   EE+ED L+ +D+G  V + +V  L  K  
Sbjct: 174 RLRGRLAKSQNTLGRSMLGLIGGGDLDEDSWEEVEDTLLIADLGPVVTESVVTALRAKMA 233

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +  V   R   D   ++ ++L+   +P           + +P V+LVVGVNG GKTT +G
Sbjct: 234 SSKV---RTEADARAVLREVLIAELQPDLDRAIRALPHADKPSVLLVVGVNGTGKTTTVG 290

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++ +   G +V+L A DTFR+AA DQL+ WA R  A  V    G+D A++A++A    
Sbjct: 291 KLARVLVADGRRVVLGAADTFRAAAADQLQSWASRVGAQVVRGPEGADPASVAFDAVDTG 350

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   DV+++DTAGRLH  + LM  +GK+ RV+ +        VL VLDAT GQN+L Q 
Sbjct: 351 IASGADVVVVDTAGRLHTKTGLMDELGKVKRVVSKR--AEVDEVLLVLDATIGQNSLPQA 408

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F      TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    F   
Sbjct: 409 RVFAEAVDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDA 468

Query: 310 ITG 312
           + G
Sbjct: 469 LLG 471


>gi|145224765|ref|YP_001135443.1| signal recognition particle-docking protein FtsY [Mycobacterium
           gilvum PYR-GCK]
 gi|145217251|gb|ABP46655.1| signal recognition particle-docking protein FtsY [Mycobacterium
           gilvum PYR-GCK]
          Length = 469

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 166/298 (55%), Gaps = 11/298 (3%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
            A +   L   +  +I    LD+   EE+ED L+ +D+G  V + +V  L  K  +  V 
Sbjct: 177 LAKSQNTLGRSMLGLIGGGDLDEDSWEEVEDTLLIADLGPVVTESVVTALRAKMASSKV- 235

Query: 81  VQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             R   D   ++ ++L+   +P           + +P V+LVVGVNG GKTT +GKL++ 
Sbjct: 236 --RTEADARAVLREVLIAELQPDLDRAIRALPHADKPSVLLVVGVNGTGKTTTVGKLARV 293

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           +   G +V+L A DTFR+AA DQL+ WA R  A  V    G+D A++A++A     A   
Sbjct: 294 LVADGRRVVLGAADTFRAAAADQLQSWASRVGAQVVRGPEGADPASVAFDAVDTGIASGA 353

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+++DTAGRLH  + LM  +GK+ RV+ +        VL VLDAT GQN+L Q  +F  
Sbjct: 354 DVVVVDTAGRLHTKTGLMDELGKVKRVVSKR--AEVDEVLLVLDATIGQNSLPQARVFAE 411

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
               TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    F   + G
Sbjct: 412 AVDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 469


>gi|20145859|emb|CAD29627.1| signal recognition particle receptor [Streptomyces lividans]
          Length = 412

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/315 (37%), Positives = 180/315 (57%), Gaps = 13/315 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LDD   EE+ED L+ +D+GV   Q
Sbjct: 103 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 162

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVG 118
           ++VE L   R    V   R   ++  L+ + L+ L  P           + +P +++VVG
Sbjct: 163 ELVERL---RERVKVLGTRTPEELRTLLREELITLVGPDMDREVKTEPATSKPGIVMVVG 219

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL++ +   G  V+L A DTFR+AA DQ + W +R  A  V    G D 
Sbjct: 220 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQPQTWGERVGAHTVRGPEGGDP 279

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++A++A K+ +    DV++IDTAGRLH  + LM  +GK+ RV+++   HAP   VL VL
Sbjct: 280 ASVAFDAVKEGKEMGSDVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPVDEVLLVL 336

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +D
Sbjct: 337 DATTGQNGLIQARVFAEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADD 396

Query: 298 LEPFVAKDFSAVITG 312
           L PF    F   + G
Sbjct: 397 LAPFEPAAFVDALIG 411


>gi|207092645|ref|ZP_03240432.1| cell division protein (ftsY) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 208

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 122/196 (62%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ +   +
Sbjct: 1   PLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTFRAAAVKQLQLWGEKLNIQVI 60

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++   AP
Sbjct: 61  SAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAP 120

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P+ +LG
Sbjct: 121 FYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLPILYLG 180

Query: 291 VGEGINDLEPFVAKDF 306
           +GE  +DL  F  + F
Sbjct: 181 MGEKEDDLIAFDEERF 196


>gi|254167609|ref|ZP_04874460.1| signal recognition particle-docking protein FtsY [Aciduliprofundum
           boonei T469]
 gi|289596933|ref|YP_003483629.1| signal recognition particle-docking protein FtsY [Aciduliprofundum
           boonei T469]
 gi|197623418|gb|EDY35982.1| signal recognition particle-docking protein FtsY [Aciduliprofundum
           boonei T469]
 gi|289534720|gb|ADD09067.1| signal recognition particle-docking protein FtsY [Aciduliprofundum
           boonei T469]
          Length = 307

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 22/306 (7%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K   E L +I+K  +   S   +   G+   I+  +L+D + + +E  L+ +D+ V V +
Sbjct: 3   KALKEKLGFIKKKAE---SMDQEFTTGVGKKITEDKLEDFLWD-IEVALMEADVAVDVIE 58

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWD----FSHRPHVIL 115
           KI  +L      K V ++    DV +++   L       L+K F++D     + RP VI+
Sbjct: 59  KIKNDLKKALVGKKVKLRA---DVGKIVEDTLKKSIKEILTKDFDFDEFIRNAPRPTVIM 115

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            +GVNG GKTTVI KL+K + D G  V++AAGDTFR+ AI+Q+ I  D      +  + G
Sbjct: 116 FLGVNGTGKTTVIAKLAKYLKDKGYSVVMAAGDTFRAGAIEQISIHGDNLGIKVIKHQAG 175

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D AA+ Y+A + A+AK  D ++IDTAGR+  N  LM  + K+ RV K      PH  + 
Sbjct: 176 GDPAAVCYDAIEHAKAKHRDFVLIDTAGRMQTNRNLMEEMKKIKRVAK------PHLTIF 229

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V DA  G +A+ Q + F    G   +I+ K+D  A+GG  + I      P+ FLG G+  
Sbjct: 230 VGDALAGNDAIEQAKKFEEAVGIDAVILNKVDADAKGGAALSIAYELNKPIIFLGNGQKY 289

Query: 296 NDLEPF 301
           +DL  F
Sbjct: 290 DDLMIF 295


>gi|118617610|ref|YP_905942.1| cell division protein FtsY [Mycobacterium ulcerans Agy99]
 gi|118569720|gb|ABL04471.1| cell division protein FtsY [Mycobacterium ulcerans Agy99]
          Length = 455

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/295 (37%), Positives = 172/295 (58%), Gaps = 13/295 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + +L    A +   L   +  +I    LD+   +++ED L+ +D+G  V + +V +L ++
Sbjct: 156 LERLRGRLAKSQNALGRSVLGLIGGGDLDEDSWQDVEDTLLVADLGPVVTEAVVSQLRSR 215

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTT 126
             + +V   R   D   ++  +L+   +P + D S R       P V+LVVGVNG GKTT
Sbjct: 216 LASGNV---RSEDDARAVLRDVLIKALQP-DMDRSIRALPHPDHPSVLLVVGVNGTGKTT 271

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL++ +   G +V+L A DTFR+AA  QL+ WA R  A+ V    G+D A++A++A 
Sbjct: 272 TVGKLARVLVADGRRVVLGAADTFRAAAAVQLQTWAARVGAEVVSGAEGADPASVAFDAV 331

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +  A   DV++IDTAGRLH    LM  +GK+ R++ R    A   VL VLDAT GQN L
Sbjct: 332 DKGVAAGADVILIDTAGRLHTKVGLMDELGKVKRLVTRR--AAVDEVLLVLDATIGQNGL 389

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            Q ++F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF
Sbjct: 390 AQAKVFAEVVDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPF 444


>gi|188024295|ref|ZP_02570025.2| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188018969|gb|EDU57009.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
          Length = 351

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 7/294 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I K  +G   +S  L   I ++ +    +++   E LE++LI  D+G     KI+E +  
Sbjct: 41  INKFNEGLRKSSSALTNAINELATKYIDINEEWYEHLEEVLIGYDVGYVATNKIIESIRN 100

Query: 73  KRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +   + V+    ++ ++ D   + +     ++   N    ++ +V+LVVGVNGVGKTT I
Sbjct: 101 EMIYQKVNDPELIKSIIIDKIFIYYIQDTEINTEINLK-QNQTNVVLVVGVNGVGKTTSI 159

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFK 187
            K++KK  +   KV+L AGDTFR+ A++QLK+WA R + D     + G D A++ Y   K
Sbjct: 160 AKITKKFINENKKVLLVAGDTFRAGAVEQLKVWAQRLNVDIELPIKEGQDPASVIYAGVK 219

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +   +K D++I DT+GRL N   LM  + K+  ++ + D HAPH  L VLDAT GQ+ + 
Sbjct: 220 KGYEQKYDLVICDTSGRLQNKINLMNELKKIHDIIHKFDEHAPHETLLVLDATQGQSGIN 279

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           Q + F+ V   +G+I+TKMD T+RGG ++ I     IPV  +G+GE ++DL  F
Sbjct: 280 QAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLDDLSVF 333


>gi|33860570|ref|NP_892131.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33633512|emb|CAE18469.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 440

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/315 (34%), Positives = 174/315 (55%), Gaps = 21/315 (6%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ + + W+ KL +G   T       + D +    L     ++LE LLIR+D+G+    
Sbjct: 126 EISIDEIDWLSKLRRGLEETRKGFVSELLDKLGDDPLTPESLDDLETLLIRADVGIDSTD 185

Query: 65  KIVEELLTK------------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           K++  L  K            ++ KD     +   +      +L+P     N        
Sbjct: 186 KVINALRKKLNEEVVGGEEGIKFLKDELRAIIEKPIKNSGTNILVPQKGKLN-------- 237

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V L+VGVNGVGKTT +GKL+   S +  K ++AA DTFR+AA++QL++W DR+  D + +
Sbjct: 238 VWLIVGVNGVGKTTTLGKLAYLSSKSNYKTLIAAADTFRAAAVEQLQVWGDRSKVDVISN 297

Query: 173 EI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +   +D AA+ ++A   A  +K D+L++DTAGRL N + LM  + K+ +++ +  P A  
Sbjct: 298 QSKNADPAAVVFDAINAANKRKSDLLLVDTAGRLQNKNNLMDELSKIKKIIDKKVPDAII 357

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L VLDA+ GQN L+Q + F   A  +G I+TK+DGT+RGG  + +     +P+ F+G 
Sbjct: 358 ESLLVLDASQGQNGLKQAKSFAKSANLSGAIITKLDGTSRGGVSLAVSAEVNLPIRFIGA 417

Query: 292 GEGINDLEPFVAKDF 306
           GEGI DL PF + +F
Sbjct: 418 GEGIKDLRPFNSFEF 432


>gi|295698250|ref|YP_003602905.1| signal recognition particle-docking protein FtsY [Candidatus Riesia
           pediculicola USDA]
 gi|291157249|gb|ADD79694.1| signal recognition particle-docking protein FtsY [Candidatus Riesia
           pediculicola USDA]
          Length = 310

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 155/263 (58%), Gaps = 5/263 (1%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E+E+ L+  DIG++  + I++++  +   ++ +    +Y + +   + ++ LSK  N   
Sbjct: 41  EVEEQLLSLDIGISTTKLIIDQIKKQINTQNFNEIDKIYSIIKRTMQDILNLSKK-NCYI 99

Query: 108 SHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           S +     +IL  GVNGVGKT  + KL+      G K  +   DTFR+A+I+Q KI +D+
Sbjct: 100 SKKVDSLKIILFFGVNGVGKTISVFKLANTYMKKGKKTAVVCADTFRAASIEQTKILSDQ 159

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
            +     S+   DAA++ +++ K  + +K +  +IIDTAGRL N   L+  + K+ RV+K
Sbjct: 160 YNIPIFFSKNKKDAASVVFDSIKFLKKEKSIQFIIIDTAGRLENKINLIEELRKITRVIK 219

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           +L        + VLD+T GQN++ Q ++F+     TG+ +TK+DGTARGG + PI+   K
Sbjct: 220 KLYDQPYFEKILVLDSTIGQNSIHQAKIFYNSVQPTGIFLTKLDGTARGGIIFPIINFFK 279

Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306
           IP+ ++G GE IND++ F  + F
Sbjct: 280 IPIKYIGFGESINDIKEFNQEHF 302


>gi|189440099|ref|YP_001955180.1| signal recognition particle GTPase [Bifidobacterium longum DJO10A]
 gi|189428534|gb|ACD98682.1| Signal recognition particle GTPase [Bifidobacterium longum DJO10A]
          Length = 423

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L    A +     + + DI++   L +   E++ED L+ +D+G   + ++V++L 
Sbjct: 120 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDLR 179

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123
           T  R         V   + E +  ++       +   KP     + +P VI++VGVNG G
Sbjct: 180 TDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPG----AAKPSVIIMVGVNGTG 235

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182
           KTT  GKL++       +VM+ A DTFR+AA DQL+ W  R +   V S+  G+D A++A
Sbjct: 236 KTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVA 295

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           +EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL VLDATTG
Sbjct: 296 FEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 353

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL PF 
Sbjct: 354 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFD 413

Query: 303 AKDF 306
            + F
Sbjct: 414 PEGF 417


>gi|23335671|ref|ZP_00120905.1| COG0552: Signal recognition particle GTPase [Bifidobacterium longum
           DJO10A]
          Length = 425

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L    A +     + + DI++   L +   E++ED L+ +D+G   + ++V++L 
Sbjct: 122 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDLR 181

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123
           T  R         V   + E +  ++       +   KP     + +P VI++VGVNG G
Sbjct: 182 TDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPG----AAKPSVIIMVGVNGTG 237

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182
           KTT  GKL++       +VM+ A DTFR+AA DQL+ W  R +   V S+  G+D A++A
Sbjct: 238 KTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVA 297

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           +EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL VLDATTG
Sbjct: 298 FEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 355

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL PF 
Sbjct: 356 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFD 415

Query: 303 AKDF 306
            + F
Sbjct: 416 PEGF 419


>gi|296109711|ref|YP_003616660.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus infernus ME]
 gi|295434525|gb|ADG13696.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus infernus ME]
          Length = 370

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/276 (37%), Positives = 162/276 (58%), Gaps = 21/276 (7%)

Query: 56  SDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWD 106
           +D+ + V +K+++    EL+ K+ + D +V+ ++Y+     +  ++ +  + L +    +
Sbjct: 98  ADVALEVVEKMIDSIKKELVGKKISPDDNVEEIVYNAVKNSILNILSREKIDLEEIIQKN 157

Query: 107 FSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               +P VI+ VG+NG GKTT I KL+ K+ + G  V+LAAGDTFR+ AI+QL+  A R 
Sbjct: 158 RKEGKPTVIVFVGINGTGKTTSIAKLAYKLKNKGYSVVLAAGDTFRAGAIEQLEEHAKRI 217

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +  + G+DAAA+ Y+A + A+AKK+DV++ DTAGR   N  LM  I K++RV K  
Sbjct: 218 GVKVIKQKPGADAAAVIYDAIQHAKAKKIDVVLADTAGRQATNINLMDEIKKVVRVTK-- 275

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  V+ V DA TG +A+ Q E F+   G  G+I+TK+D  A+GG  I I      P
Sbjct: 276 ----PDLVIFVADALTGNDAIFQAEEFNKAVGIDGVILTKVDADAKGGAAISIGYAIGKP 331

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321
           + +LGVG+   DL  F + DF  +I     +GEE I
Sbjct: 332 ILYLGVGQRYEDLIEF-SPDF--IIKKI--FGEEDI 362


>gi|41409087|ref|NP_961923.1| hypothetical protein MAP2989c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397446|gb|AAS05306.1| FtsY [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 444

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/276 (39%), Positives = 162/276 (58%), Gaps = 9/276 (3%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLM 97
           D+   +++ED L+ +D+G  V + ++ +L  +  + DV  +     VL DV  LI+++  
Sbjct: 173 DEDAWQDVEDTLLVADLGPVVTESVIAQLRGRLASSDVRTEADAKAVLRDV--LINELRP 230

Query: 98  PLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            L +       +  P V+L+VGVNG GKTT +GKL++ +   G +V+L A DTFR+AA D
Sbjct: 231 DLDRSIRALPHADHPSVLLIVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAAD 290

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL+ WA R  A+ V    G+D A++A++A  +  A   DV++IDTAGRLH    LM  + 
Sbjct: 291 QLQTWASRVGAEVVRGAEGADPASVAFDAVDKGIAAGADVVLIDTAGRLHTKVGLMDELD 350

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+ RV+ R    A   VL VLDAT GQN L Q  +F  V   TG ++TK+DGTA+GG + 
Sbjct: 351 KVKRVVTRC--AAVDEVLLVLDATIGQNGLAQARVFAEVVEITGAVLTKLDGTAKGGIVF 408

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            +     +PV  +G+GEG +DL PF    F   + G
Sbjct: 409 RVQQELGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 444


>gi|312133444|ref|YP_004000783.1| ftsy [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772675|gb|ADQ02163.1| FtsY [Bifidobacterium longum subsp. longum BBMN68]
          Length = 423

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L    A +     + + DI++   L +   E++ED L+ +D+G   + ++V++L 
Sbjct: 120 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDLR 179

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123
           T  R         V   + E +  ++       +   KP     + +P VI++VGVNG G
Sbjct: 180 TDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPG----AAKPSVIIMVGVNGTG 235

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182
           KTT  GKL++       +VM+ A DTFR+AA DQL+ W  R +   V S+  G+D A++A
Sbjct: 236 KTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVA 295

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           +EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL VLDATTG
Sbjct: 296 FEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 353

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL PF 
Sbjct: 354 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFD 413

Query: 303 AKDF 306
            + F
Sbjct: 414 PEGF 417


>gi|294790256|ref|ZP_06755414.1| signal recognition particle-docking protein FtsY [Scardovia
           inopinata F0304]
 gi|294458153|gb|EFG26506.1| signal recognition particle-docking protein FtsY [Scardovia
           inopinata F0304]
          Length = 395

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/303 (38%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S I +L    A+++    + +  I++   L +   E++ED L+ +D+G   ++ +V +L 
Sbjct: 89  SRIVRLRSELAASANPFGKVLFSILTRDNLSESDWEDVEDTLLLADVGADTSEDLVNQLK 148

Query: 72  TKRY---AKDVSVQRVLYDVSELIH----KMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           T       KD +V R +   S L++     M   L+     D S  P  I++VGVNG GK
Sbjct: 149 TDARITGQKDPAVVRSMLR-SRLLNLVDSTMDRSLAAHRQKDDSTVPSAIIMVGVNGSGK 207

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAY 183
           TT  GKL++     G  V+L A DTFR+AA DQL+ W  R +   V S+  G+D A++A+
Sbjct: 208 TTTAGKLARLFVAEGKSVILGAADTFRAAAADQLETWGSRINVPVVRSDHEGADPASVAF 267

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA ++A+    DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDATTGQ
Sbjct: 268 EAAQKARDSHADVLIIDTAGRLQNKANLMDELGKIRRVTEKTLPV--DEVLLVLDATTGQ 325

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N L Q  +F    G TG+++TK+DG+A+GG +I +     +PV  +G+GEG +DL  F  
Sbjct: 326 NGLEQARVFSQAIGITGVVLTKLDGSAKGGIVISVQKALGVPVKLVGLGEGPDDLSDFDP 385

Query: 304 KDF 306
           + F
Sbjct: 386 ESF 388


>gi|123965244|ref|YP_001010325.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9515]
 gi|123199610|gb|ABM71218.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9515]
          Length = 415

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 176/316 (55%), Gaps = 21/316 (6%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
            +++ + + W+ KL KG   T       + D +    L     ++LE LLIR+D+G+   
Sbjct: 100 NEISIDEIDWLSKLRKGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDST 159

Query: 64  QKIVEELLTKRYAKDVS----VQRVLYDVSELIHK--------MLMPLSKPFNWDFSHRP 111
            K+++ L  K   + V     ++ +  ++  +I K        +L+P     N       
Sbjct: 160 DKVIDSLRKKLNEEVVGGEEGIKFLKGELRAIIDKPIKDSGINILVPQKGKLN------- 212

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            V L+VGVNGVGKTT +GKL+   S +  K ++AA DTFR+AA++QL++W  R+  + + 
Sbjct: 213 -VWLIVGVNGVGKTTTLGKLAYLSSKSNYKTLIAAADTFRAAAVEQLQVWGHRSKVEVIS 271

Query: 172 SEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
           ++   +D AA+ ++A   A  +  D+L++DTAGRL   + LM  + K+ R++ +  P A 
Sbjct: 272 NQSKNADPAAVVFDALNAANKRNSDLLLVDTAGRLQTKNNLMDELSKIKRIIDKKVPDAI 331

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VLDA+ GQN L+Q + F   A  +G ++TK+DGT+RGG  + +     +P+ F+G
Sbjct: 332 VESLLVLDASQGQNGLKQAKSFAKSANLSGAVITKLDGTSRGGVSLAVSAEVNLPIRFIG 391

Query: 291 VGEGINDLEPFVAKDF 306
            GEGI DL PF + +F
Sbjct: 392 AGEGIKDLRPFNSFEF 407


>gi|269792626|ref|YP_003317530.1| signal recognition particle-docking protein FtsY [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100261|gb|ACZ19248.1| signal recognition particle-docking protein FtsY [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 309

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/312 (35%), Positives = 177/312 (56%), Gaps = 12/312 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +++K+         + + G+ +I S   + D   E LE+ LI  D+GVA+A+++V +L
Sbjct: 2   IGFLKKVFDKVRDVKSRWEYGLRNIFSDEPITDEFFERLEEHLIAGDVGVALAERLVSDL 61

Query: 71  LTKRYAKDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
             KR+A++  +       +R    + +++ + L   SK  +  F+    +IL++GVNG G
Sbjct: 62  --KRHAQEKRLSNATELKERFGQMLKDMLGEGLGGASKGLS--FNGPVGLILLIGVNGSG 117

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT   KL+K +   G  V+LAA DTFR+AAIDQLK+W  R     V  + G D+AA+ Y
Sbjct: 118 KTTTAAKLAKLLKGQGNNVVLAAADTFRAAAIDQLKVWGARAGVRVVAQDPGGDSAAVVY 177

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A +  ++    ++I DTAGRLH    LM  + K+ RV +R         L VLDA TGQ
Sbjct: 178 DAIQSVKSTG-GIVIADTAGRLHTKHNLMEELAKIYRVARRDVGEEDIFPLLVLDAITGQ 236

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q   F+      G+++TK D TA+GG ++ +    K+PV ++G+GEGI+D+ PF  
Sbjct: 237 NAISQARSFNGAMPLRGVVLTKFDHTAKGGAVLALSSELKVPVLYVGIGEGIDDMAPFSP 296

Query: 304 KDFSAVITGCLD 315
            DF   + G  D
Sbjct: 297 DDFVEDLLGGGD 308


>gi|229258566|gb|ACQ45588.1| cell division protein FtsY [Vesicomya sp. endosymbiont]
          Length = 194

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 120/192 (62%), Gaps = 7/192 (3%)

Query: 82  QRVLYDVSELIHKMLMPLSK------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++ L D   L   +   L+K       FN +  +   VILVVGVNG GKTT+IGK++K  
Sbjct: 4   RKTLKDAERLYQFLKNELAKLLVEDNQFNTNI-NETFVILVVGVNGAGKTTLIGKMAKSF 62

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
            + G  VMLAAGDTFR+AAI+QLK+W  R     V    G+DA ++ ++A++ AQAK +D
Sbjct: 63  QNQGKSVMLAAGDTFRAAAIEQLKVWGQRNDIPVVAQTTGADATSVIFDAYQSAQAKNID 122

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           +LI DTAGRLH  + LM  + K+ RV+ + + +APH  + V+D   GQNA+ Q + F+  
Sbjct: 123 ILIADTAGRLHTQNNLMQELAKIKRVISKQNANAPHETMLVIDGGLGQNAINQAKEFNKA 182

Query: 256 AGTTGLIMTKMD 267
              +G+ +TK+D
Sbjct: 183 VALSGISITKLD 194


>gi|291517568|emb|CBK71184.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           longum subsp. longum F8]
          Length = 425

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L    A +     + + DI++   L +   E++ED L+ +D+G   + ++V++L 
Sbjct: 122 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDLR 181

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123
           T  R         V   + E +  ++       +   KP     + +P +I++VGVNG G
Sbjct: 182 TDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPG----AAKPSIIIMVGVNGTG 237

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182
           KTT  GKL++       +VM+ A DTFR+AA DQL+ W  R +   V S+  G+D A++A
Sbjct: 238 KTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVA 297

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           +EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL VLDATTG
Sbjct: 298 FEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 355

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL PF 
Sbjct: 356 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFD 415

Query: 303 AKDF 306
            + F
Sbjct: 416 PEGF 419


>gi|158312998|ref|YP_001505506.1| signal recognition particle-docking protein FtsY [Frankia sp.
           EAN1pec]
 gi|158108403|gb|ABW10600.1| signal recognition particle-docking protein FtsY [Frankia sp.
           EAN1pec]
          Length = 431

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 110/276 (39%), Positives = 158/276 (57%), Gaps = 12/276 (4%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL------LTKRYAKDVSVQRVLYDVSE 90
           S   LD+   E++E  L+ +D+GV    ++VE L      L  R A D  +  +L D  E
Sbjct: 153 SGDNLDEEAWEDVEATLLVADVGVTATAEMVEALRERTRVLGARTAADARM--MLRD--E 208

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L+ ++     +        RP V+LVVGVNG GKTT  GK+++ +   G  V+L A DTF
Sbjct: 209 LLAQVGTTTDRSLRTSAPDRPAVVLVVGVNGTGKTTTCGKIARLLVADGRSVVLGAADTF 268

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA DQL+ W  R  A  V    G+D A++A+EA K+      D +++DTAGRLH    
Sbjct: 269 RAAAADQLETWGGRVGATTVRGAEGADPASVAFEAVKRGIDDGADTVLVDTAGRLHTKVG 328

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + K+ RV+ +  P     VL VLD+TTGQNAL Q  +F      TG+++TK+DGTA
Sbjct: 329 LMDELTKIKRVVGKQSPV--DEVLLVLDSTTGQNALVQARVFTEAVDITGVVLTKLDGTA 386

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +GG +I +     +PV  +G+GEG +DL PF  + F
Sbjct: 387 KGGIVIAVQRELGVPVKLIGLGEGPDDLAPFEPEAF 422


>gi|23465034|ref|NP_695637.1| FtsY signal recognition particle [Bifidobacterium longum NCC2705]
 gi|239622641|ref|ZP_04665672.1| FtsY signal recognition particle [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|322688369|ref|YP_004208103.1| signal recognition particle-docking protein [Bifidobacterium longum
           subsp. infantis 157F]
 gi|23325639|gb|AAN24273.1| FtsY signal recognition particle [Bifidobacterium longum NCC2705]
 gi|239514638|gb|EEQ54505.1| FtsY signal recognition particle [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|320459705|dbj|BAJ70325.1| signal recognition particle-docking protein [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 420

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L    A +     + + DI++   L +   E++ED L+ +D+G   + ++V++L 
Sbjct: 117 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDLR 176

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123
           T  R         V   + E +  ++       +   KP     + +P VI++VGVNG G
Sbjct: 177 TDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPG----AAKPSVIIMVGVNGTG 232

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182
           KTT  GKL++       +VM+ A DTFR+AA DQL+ W  R +   V S+  G+D A++A
Sbjct: 233 KTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVA 292

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           +EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL VLDATTG
Sbjct: 293 FEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 350

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN + Q ++F    G TG++++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF 
Sbjct: 351 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFD 410

Query: 303 AKDF 306
            + F
Sbjct: 411 PEGF 414


>gi|317482722|ref|ZP_07941735.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           sp. 12_1_47BFAA]
 gi|322690389|ref|YP_004219959.1| signal recognition particle-docking protein [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|316915845|gb|EFV37254.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           sp. 12_1_47BFAA]
 gi|320455245|dbj|BAJ65867.1| signal recognition particle-docking protein [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 425

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L    A +     + + DI++   L +   E++ED L+ +D+G   + ++V++L 
Sbjct: 122 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDLR 181

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123
           T  R         V   + E +  ++       +   KP     + +P VI++VGVNG G
Sbjct: 182 TDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPG----AAKPSVIIMVGVNGTG 237

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182
           KTT  GKL++       +VM+ A DTFR+AA DQL+ W  R +   V S+  G+D A++A
Sbjct: 238 KTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPASVA 297

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           +EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL VLDATTG
Sbjct: 298 FEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 355

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN + Q ++F    G TG++++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF 
Sbjct: 356 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFD 415

Query: 303 AKDF 306
            + F
Sbjct: 416 PEGF 419


>gi|229258564|gb|ACQ45587.1| cell division protein FtsY [Vesicomya sp. endosymbiont]
          Length = 194

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 110/159 (69%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   VILVVGVNG GKTT+IGKL+K   + G  VMLAAGDTFR+AA++QLK+W +R    
Sbjct: 36  NETFVILVVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGERNQIP 95

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +    G+DAA++ ++A++ AQAK +D+LI DTAGRLH    LM  + K+ RV+ + + +
Sbjct: 96  VIAQTTGADAASVIFDAYQSAQAKNIDILIADTAGRLHTQDNLMQELAKIKRVIAKQNAN 155

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           APH  + ++D  +GQNA+ Q + F+     +G+ +TK+D
Sbjct: 156 APHETMLIIDGGSGQNAINQAKEFNKAVTLSGISITKLD 194


>gi|16082103|ref|NP_394537.1| signal recognition particle protein [Thermoplasma acidophilum DSM
           1728]
 gi|10640391|emb|CAC12205.1| probable signal recognition particle protein [Thermoplasma
           acidophilum]
          Length = 288

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 163/279 (58%), Gaps = 16/279 (5%)

Query: 27  KLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
           KLK+   +I   +++D D V +E+   L+ +D+ +  A+ +   L+  +  +D ++    
Sbjct: 4   KLKKKFAEIFHRKKIDPDEVADEIPLKLVEADVSLEAAEDLAS-LVRNKLKEDTTL---- 58

Query: 86  YDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
            D +E++   ++ +   + +D    + +P V+L +G+NG GKTT IGK +  +   G  V
Sbjct: 59  -DPNEVLSSSILEMMPEYKFDVLNVNKKPFVVLFLGINGTGKTTTIGKFAHYLKRNGKSV 117

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ++AA DTFR+ AI+Q+ +       + +  + GSD +++A++A + A+A+ +D ++IDTA
Sbjct: 118 VIAAADTFRAGAIEQISLIGREAGTEVIRHDRGSDPSSVAFDAIEHARARNIDYVLIDTA 177

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GR++ N  L+  + K+ RV K      P   L V+DA +GQ+++ Q  MF    G  G+I
Sbjct: 178 GRMNTNKNLLDEMKKIKRVSK------PDLTLLVIDAVSGQDSVNQARMFEENVGYDGVI 231

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +TK+D  ARGG ++ I    K PV F+  G+G++D+ PF
Sbjct: 232 VTKLDTDARGGSILSIYHDLKKPVLFVCTGQGLDDIMPF 270


>gi|317506050|ref|ZP_07963879.1| signal recognition particle-docking protein FtsY [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255654|gb|EFV14895.1| signal recognition particle-docking protein FtsY [Segniliparus
           rugosus ATCC BAA-974]
          Length = 505

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/267 (40%), Positives = 158/267 (59%), Gaps = 13/267 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E++E  L+ +D+G +  + ++E+L   R A   S  R   +   ++  +L+   KP  +D
Sbjct: 239 EDVEATLLTADLGASTTEGVIEKL---REALARSEVRSEAEARAVLKDVLVAELKP-EFD 294

Query: 107 FS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            S        RP V+LVVGVNG GKTT  GKL++ +   G +V+L A DTFR+AA++QLK
Sbjct: 295 RSVRALPHADRPSVVLVVGVNGTGKTTTTGKLARVLVADGRRVLLGAADTFRAAAVEQLK 354

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            W  R  A+ V    G+D A++A+EA  +      DV++IDTAGRLH  + LM  +GK+ 
Sbjct: 355 TWGQRVGAEVVAGAEGADPASVAFEAVSRGVEAGADVVLIDTAGRLHTKTGLMDELGKIK 414

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV++R        V+ VLDAT GQN L Q ++F  V   TG+ +TK+DGTA+GG +  + 
Sbjct: 415 RVVERK--AGVDEVILVLDATIGQNGLLQAKVFSEVVDVTGVALTKLDGTAKGGIVFAVQ 472

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDF 306
               +PV  +G+GEG +DL PF    F
Sbjct: 473 KELGVPVKLVGLGEGKDDLAPFEPNAF 499


>gi|271969191|ref|YP_003343387.1| cell division membrane protein [Streptosporangium roseum DSM 43021]
 gi|270512366|gb|ACZ90644.1| cell division membrane protein [Streptosporangium roseum DSM 43021]
          Length = 394

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/273 (43%), Positives = 169/273 (61%), Gaps = 13/273 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTK------RYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +E+E+ LI +D+GVA  + +VEEL T+      R  ++V   R L    EL+ ++ + L 
Sbjct: 127 DEIEETLITADVGVAPTRAMVEELRTRVKVLGSRSPEEV---RGLLK-EELLTQLGVDLD 182

Query: 101 KPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           +  +      RP V+LVVGVNG GKTT  GKL++ +   G KV+L A DTFR+AA DQL+
Sbjct: 183 RTLHVKPHGERPAVVLVVGVNGTGKTTTTGKLARSLIGDGNKVVLGAADTFRAAAADQLQ 242

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            W DR  A+ V    G D A++A++A  +    KVDV+I+DTAGRLH  + LM  +GK+ 
Sbjct: 243 TWGDRVGAEVVRGPEGGDPASIAFDAVAKGIEDKVDVVIVDTAGRLHTKTGLMDELGKVK 302

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV+++        VL VLDATTGQN +RQ  +F  V   TG+ +TK+DGTA+GG +I + 
Sbjct: 303 RVIEK--KATVDEVLLVLDATTGQNGMRQARVFAEVVDVTGIALTKLDGTAKGGIIISVQ 360

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
               +PV  +G+GEG +DL PF A+ F   + G
Sbjct: 361 RELGVPVKLVGLGEGPDDLAPFDAEVFVDTLLG 393


>gi|297527350|ref|YP_003669374.1| signal recognition particle-docking protein FtsY [Staphylothermus
           hellenicus DSM 12710]
 gi|297256266|gb|ADI32475.1| signal recognition particle-docking protein FtsY [Staphylothermus
           hellenicus DSM 12710]
          Length = 295

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 163/303 (53%), Gaps = 25/303 (8%)

Query: 13  WIRKLTKGF------ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
             R++ K F      AS+ L  +E + D+I   + +          L+ +D+   VA++I
Sbjct: 1   MFRRIKKAFSKFIDKASSLLFSREQLLDLIDEFKFE----------LVSNDVAYDVAEEI 50

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVG 123
             +L+     K V  +  L D  +   K      +P N  +     +P++I+ +GVNGVG
Sbjct: 51  AAKLVEAVENKIVKDKETLMDFLKKTIKSYFDSVEPINIFYEASKTKPYIIVFLGVNGVG 110

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT I K +    + G K ++ A DTFR+ A +QL++  +RT       + G+D A++A+
Sbjct: 111 KTTTIAKTAVLFKEKGFKPLMVAADTFRAGAQEQLRVHGERTGIPVFMGKYGADPASIAF 170

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+ +  DV++IDTAGR+H +S L+  + K+IRV K      PH  + V+DA TG 
Sbjct: 171 DAIRHAETRGYDVVLIDTAGRMHTDSNLVDELRKIIRVAK------PHRKILVVDALTGN 224

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A+ Q   F    G   +I+TK+D   +GG  + IV + + P+  +GVG+G  DL+PF  
Sbjct: 225 DAIEQAVFFDKAVGVDAVIVTKVDAYEQGGVPLSIVYSIRKPIIMIGVGQGYKDLKPFNI 284

Query: 304 KDF 306
            +F
Sbjct: 285 DEF 287


>gi|227545683|ref|ZP_03975732.1| signal recognition particle GTPase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227213799|gb|EEI81638.1| signal recognition particle GTPase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 425

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L    A +     + + DI++   L +   E++ED L+ +D+G   + ++V++L 
Sbjct: 122 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGADASAQLVDDLR 181

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123
           T  R         V   + E +  ++       +   KP     + +P VI++VGVNG G
Sbjct: 182 TDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPG----AAKPSVIIMVGVNGTG 237

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182
           KTT  GKL++       +VM+ A DTFR+AA DQL+ W  R +   V S+  G+D A++A
Sbjct: 238 KTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVTVVRSDKDGADPASVA 297

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           +EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL VLDATTG
Sbjct: 298 FEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 355

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN + Q ++F    G TG++++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF 
Sbjct: 356 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFD 415

Query: 303 AKDF 306
            + F
Sbjct: 416 PEGF 419


>gi|329947903|ref|ZP_08294835.1| signal recognition particle-docking protein FtsY [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328523527|gb|EGF50625.1| signal recognition particle-docking protein FtsY [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 389

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/280 (39%), Positives = 168/280 (60%), Gaps = 19/280 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFN 104
           EE+ED L+ SD+G+ V   +++EL T+      S    +  V  +EL+  +   L +  N
Sbjct: 115 EEIEDTLLTSDLGIEVTTSLMDELRTQAKVLGTSDPEAVRTVLRAELLKLVDPSLDRSLN 174

Query: 105 WDFSHRPH-----------VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            D   RP             IL+VGVNG GKTT  GKL++ +      V+L A DTFR+A
Sbjct: 175 LD---RPTPADGAQGTPAAAILMVGVNGTGKTTTCGKLARVLVAQDKTVVLGAADTFRAA 231

Query: 154 AIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           A +QL  W +R   D V SE  G+D A++AY+A ++A  ++ DV+++DTAGRL N + LM
Sbjct: 232 AAEQLSTWGERVGVDVVRSEKEGADPASVAYDAARRAADQEADVVVVDTAGRLQNKAGLM 291

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +GK+ RV++++ P     +L VLDATTGQN +RQ ++F    G TG+++TK+DGTA+G
Sbjct: 292 DELGKIKRVMEKIAPVG--EILLVLDATTGQNGMRQAQVFSEAVGITGIVLTKLDGTAKG 349

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G ++ +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 350 GIVVTVQRELGVPVKLVGLGEGADDLAPFDPEGFVDALLG 389


>gi|291455918|ref|ZP_06595308.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           breve DSM 20213]
 gi|291382327|gb|EFE89845.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           breve DSM 20213]
          Length = 421

 Score =  162 bits (409), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 178/304 (58%), Gaps = 15/304 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L    A +     + + DI++   L +   E++ED L+ +D+G   + ++V++L 
Sbjct: 118 SRLTRLKAKLAKSGNPFGKALFDILAKDNLSESDWEDVEDTLLLADVGAEASAQLVDDLK 177

Query: 72  TKRY----AKDVSVQRVLYD-VSELIHK---MLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           T       A    V+  L D + +L+ +     + + KP     +++P VI++VGVNG G
Sbjct: 178 TDARITGKADPAEVRATLKDKLLDLVGRDTDRRLNVEKPG----ANKPGVIIMVGVNGTG 233

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALA 182
           KTT  GKL++       +V++ A DTFR+AA DQL+ W  R +   V   + G+D A++A
Sbjct: 234 KTTTAGKLARLFVSEDKQVIMGAADTFRAAAADQLETWGARVNVPVVRADKDGADPASVA 293

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           +EA  +A+    DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDATTG
Sbjct: 294 FEASAKAKEANADVLIIDTAGRLQNKANLMDELGKIRRVTEKNLPV--DEVLLVLDATTG 351

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL PF 
Sbjct: 352 QNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLAPFD 411

Query: 303 AKDF 306
            + F
Sbjct: 412 PEGF 415


>gi|229258576|gb|ACQ45593.1| cell division protein FtsY [Vesicomya sp. mt-I symbiont]
          Length = 194

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 75/159 (47%), Positives = 109/159 (68%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   VILVVGVNG GKTT+IGK++K   + G  VMLAAGDTFR+AA++QLK+W  R    
Sbjct: 36  NETFVILVVGVNGTGKTTLIGKMAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGQRNKTP 95

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V    G+DAA++ ++A++ AQAK +DVLI DTAGRLH  + LM  + K+ RV+ + + +
Sbjct: 96  VVAQTTGTDAASVIFDAYQSAQAKNIDVLIADTAGRLHTQNNLMQELAKIKRVIAKQNAN 155

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           APH  + V+D  +GQN + Q + F+     +G+ +TK+D
Sbjct: 156 APHETMLVIDGGSGQNVINQAKEFNKAITLSGISITKLD 194


>gi|15827857|ref|NP_302120.1| SRP family GTP-binding protein [Mycobacterium leprae TN]
 gi|221230334|ref|YP_002503750.1| putative SRP family of GTP-binding protein [Mycobacterium leprae
           Br4923]
 gi|3334190|sp|O33010|FTSY_MYCLE RecName: Full=Cell division protein ftsY homolog
 gi|2251151|emb|CAB10596.1| FtsY protein [Mycobacterium leprae]
 gi|13093409|emb|CAC30579.1| possible SRP family of GTP-binding protein [Mycobacterium leprae]
 gi|219933441|emb|CAR71723.1| possible SRP family of GTP-binding protein [Mycobacterium leprae
           Br4923]
          Length = 430

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 113/293 (38%), Positives = 165/293 (56%), Gaps = 13/293 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    A T       I  +I    LD+   +ELED L+ +D+G    + ++  L ++  
Sbjct: 133 RLRGRLARTQNAFGRSILGLIVGGDLDEDSWQELEDTLLVADLGPVATESVMSALRSRLL 192

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVI 128
             +V  +    D   ++  +L+   +P + D S R       P V+L+VGVNG GKTT +
Sbjct: 193 NSNVHTE---SDARTMLRDVLISELQP-DMDRSIRALPHADHPAVLLIVGVNGTGKTTTV 248

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A+ V    G+D A++A++A  +
Sbjct: 249 GKLARVLVADGRRVVLGAADTFRAAAADQLQTWASRVGAELVRGVEGADPASVAFDAVDK 308

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
                 DV++IDTAGRLH    LM  + K+ RV+ R    A   VL VLDAT GQN L Q
Sbjct: 309 GIGAGADVVVIDTAGRLHTKVGLMDELDKIKRVVTRR--AAVDEVLLVLDATIGQNGLTQ 366

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           V +F  V   TG ++TK+DGTA+GG +  I     +PV  +G+GEG +DL PF
Sbjct: 367 VRVFAEVVDITGAVLTKLDGTAKGGIVFRIQRELGVPVKLVGLGEGPDDLAPF 419


>gi|229258572|gb|ACQ45591.1| cell division protein FtsY [Vesicomya sp. mt-III symbiont]
          Length = 194

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 75/159 (47%), Positives = 110/159 (69%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   VILVVGVNG GKTT+IGK++K   + G  VMLAAGDTFR+AA++QLK+W  R +  
Sbjct: 36  NETFVILVVGVNGAGKTTLIGKIAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGQRNNTP 95

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V    G+DAA++ ++A + AQAK +D+LI DTAGRLH  + LM  + K+ RV+ + + +
Sbjct: 96  VVAQTTGTDAASVIFDACQSAQAKNIDILIADTAGRLHTQNNLMQELAKIKRVIAKQNAN 155

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           APH  + V+D  +GQNA+ Q + F+     +G+ +TK+D
Sbjct: 156 APHETMLVIDGGSGQNAINQAKEFNKAVTLSGISITKLD 194


>gi|229258554|gb|ACQ45582.1| cell division protein FtsY [Calyptogena kilmeri gill symbiont]
          Length = 194

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/159 (47%), Positives = 109/159 (68%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   VILVVGVNG GKTT+IGKL+K   + G  VMLAAGDTFR+AAI+QLKIW  R +  
Sbjct: 36  NETFVILVVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAAIEQLKIWGQRNNIP 95

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V   +G+D A++ ++A++ AQAK +D+L+ DTAGRLH    LM  + K+ RV+ + + +
Sbjct: 96  VVAKTLGADTASVIFDAYQSAQAKNIDILLADTAGRLHTQDNLMQELAKIKRVINKQNIN 155

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           APH  + V+D  +GQN + Q + F+     +G+ +TK+D
Sbjct: 156 APHETMLVIDGGSGQNVINQAKEFNKAVNLSGISITKLD 194


>gi|293189829|ref|ZP_06608543.1| signal recognition particle-docking protein FtsY [Actinomyces
           odontolyticus F0309]
 gi|292821244|gb|EFF80189.1| signal recognition particle-docking protein FtsY [Actinomyces
           odontolyticus F0309]
          Length = 413

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 180/302 (59%), Gaps = 16/302 (5%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           ++S  L   I  ++S  +L     EE+E+ L+ +D+G+     ++E L  +   + V+ +
Sbjct: 114 ASSGSLGRAILGVLSRGQLGAADWEEIEESLLIADLGLEATDTLMEALKRRVAVESVTDE 173

Query: 83  ---------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
                     +L  V   + + L  L +P   D S +P V+L+VGVNG GKTT +GKL++
Sbjct: 174 ARIREILREELLELVDPAMDRSLN-LERP-EVDGSGKPAVVLMVGVNGTGKTTTVGKLAR 231

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAK 192
            +      V+L A DTFR+AA DQL  W +R   D V S+  G+D A++A+EA ++   +
Sbjct: 232 ILVAEDKSVILGAADTFRAAAADQLATWGERVGVDVVRSDREGADPASVAFEAVREGVDR 291

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS-VLQVLDATTGQNALRQVEM 251
            VDV+++DTAGRL N S LM  +GK+ RV+ +    AP S VL VLDATTGQN ++Q E+
Sbjct: 292 DVDVVLVDTAGRLQNKSTLMDELGKIKRVMTK---QAPVSEVLLVLDATTGQNGMKQAEV 348

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TG+++TK+DG+A+GG ++ +     +PV F+G+GEG +DL PF  + F   I 
Sbjct: 349 FAEATGVTGIVLTKLDGSAKGGIVVSVQRALGVPVKFVGLGEGADDLAPFDPQGFVDAIV 408

Query: 312 GC 313
           G 
Sbjct: 409 GS 410


>gi|296242673|ref|YP_003650160.1| signal recognition particle-docking protein FtsY [Thermosphaera
           aggregans DSM 11486]
 gi|296095257|gb|ADG91208.1| signal recognition particle-docking protein FtsY [Thermosphaera
           aggregans DSM 11486]
          Length = 297

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/283 (35%), Positives = 164/283 (57%), Gaps = 19/283 (6%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
           K  E  + II SR   + + +EL+  L+ SD+   VA++I   LL    A D  + R   
Sbjct: 11  KFIESASSIIFSREKLESLIDELKLELVASDVAYEVAEEISSRLLK---AVDEGLVRSRE 67

Query: 87  DVSELIHKMLMP-LSKPFNWDF-----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           D+  ++  +L+    K  + D      +++P  ++ +GVNGVGKTT I K++  + D G 
Sbjct: 68  DLQRVLKNILIEVFEKAGSVDLLSVARANKPCKLVFLGVNGVGKTTTIAKIAVLLRDNGF 127

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K ++ A DTFR+ A +QLKI ++RT       + GSD A++A++A + A ++  D L+ID
Sbjct: 128 KPLMVAADTFRAGAQEQLKIHSERTGIPVFTGKYGSDPASVAFDAIQFASSRGFDALLID 187

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGR+H +  L+  + K++RV+K      PH  + V+DA TG +A+ Q   F+   G  G
Sbjct: 188 TAGRMHVDIDLVNELKKVVRVVK------PHFKILVVDALTGNDAIEQARFFNEAVGVDG 241

Query: 261 LIMTKMDGTARGGGLIPIVVTHKI--PVYFLGVGEGINDLEPF 301
           +I+TK+D   +GG  +P+ + + +  PV + GVG+G  DL+PF
Sbjct: 242 VIVTKVDAYEQGG--VPLSIAYILGKPVIYAGVGQGYKDLKPF 282


>gi|290957110|ref|YP_003488292.1| signal recognition particle receptor [Streptomyces scabiei 87.22]
 gi|260646636|emb|CBG69733.1| putative signal recognition particle receptor [Streptomyces scabiei
           87.22]
          Length = 399

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 183/312 (58%), Gaps = 7/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++ + +   + +L    + +   L +G+  ++S   LDD   EE+ED L+ +D+GV   Q
Sbjct: 90  EIPAPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 149

Query: 65  KIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS-HRPHVILVVGVNG 121
           ++VE L  + R     +   +   + E +  +L+P   +  N D     P +++VVGVNG
Sbjct: 150 ELVERLRERVRVLGTRTPAELRTLLREELLTILVPEFDRAVNTDSPLDTPGIVMVVGVNG 209

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 210 TGKTTTTGKLARVLVADGKNVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 269

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDAT 240
           A++A K+   +  DV++IDTAGRLH  + LM  +GK+ RV+++   HAP   +L VLDAT
Sbjct: 270 AFDAVKEGIEEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPLDEILLVLDAT 326

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL P
Sbjct: 327 TGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAP 386

Query: 301 FVAKDFSAVITG 312
           F  + F   + G
Sbjct: 387 FEPEAFVDALIG 398


>gi|229258574|gb|ACQ45592.1| cell division protein FtsY [Vesicomya sp. mt-II symbiont]
          Length = 194

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 110/159 (69%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   VILVVGVNG GKTT+IGK++K   + G  VMLAAGDTFR+AA++QL++W  R +  
Sbjct: 36  NETFVILVVGVNGAGKTTLIGKMAKSFQNQGKSVMLAAGDTFRAAAVEQLRVWGQRNNTP 95

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V    G+DAA++ ++A++ AQAK +D+LI DTAGRLH  + LM  + K+ RV+ + + +
Sbjct: 96  VVAQTTGTDAASVIFDAYQSAQAKNIDILIADTAGRLHTQNNLMQELAKIKRVIAKQNEN 155

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           APH  + V+D  +GQN + Q + F+     +G+ +TK+D
Sbjct: 156 APHETMLVIDGGSGQNVINQAKEFNKAVTLSGISITKLD 194


>gi|256372275|ref|YP_003110099.1| signal recognition particle-docking protein FtsY [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008859|gb|ACU54426.1| signal recognition particle-docking protein FtsY [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 367

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/196 (46%), Positives = 132/196 (67%), Gaps = 2/196 (1%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VILVVGVNG GKTT +GKL+ ++ + G  V++AA DTFR+AA +Q+ +WA+R+    V
Sbjct: 150 PTVILVVGVNGAGKTTTVGKLAARLRERG-DVVIAAADTFRAAATEQVAVWAERSGVRLV 208

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G+D  A+ ++A   A+A+   V++ DTAGRL N + LMA +GK+ RV ++   H  
Sbjct: 209 AGQQGADPGAVVFDAVDAAKARGAAVVVCDTAGRLQNKANLMAELGKVRRVAEKAAGHV- 267

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             VL V+DATTGQN L Q  +F  V G TG+++TK+DG+A+GG  + I    K+PV  +G
Sbjct: 268 DEVLLVVDATTGQNGLSQARVFGEVTGLTGVVLTKLDGSAKGGIALAIEHEFKVPVKLVG 327

Query: 291 VGEGINDLEPFVAKDF 306
           VGE + DL+PF   DF
Sbjct: 328 VGEALEDLQPFDPDDF 343


>gi|1217621|emb|CAA65233.1| signal recognition particle receptor [Acidianus ambivalens]
          Length = 374

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 152/261 (58%), Gaps = 21/261 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML----MPLSKPFNWDF- 107
           L+ SD+ + V  KI+E+L +    K V+      D+ EL+ K L    M + +   ++  
Sbjct: 112 LLESDVSLEVTDKILEDLKSSLIGKKVNRSE---DLDELVKKSLKNSIMEILEKNRFERN 168

Query: 108 -------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                  S +P+VI+  GVNGVGKTT I K++  +  AGLKV+++A DTFR+AA +QL I
Sbjct: 169 LIEEIKRSPKPYVIMFFGVNGVGKTTTIAKVAYMLKKAGLKVIVSASDTFRAAAQEQLAI 228

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
              +     V  + G D A++A++A + A+++ +DV++IDTAGR+H +  L   + +++R
Sbjct: 229 HCQKLEIPLVKGKYGGDPASVAFDAIQAAKSRGIDVVLIDTAGRMHVDKDLTEELKRIVR 288

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           + K      P+  L V+DA  G +AL Q + F  V    G+I+TK+D  A+GG ++ +  
Sbjct: 289 ISK------PNLKLLVIDALAGNDALEQAKYFENVVDYDGVILTKVDADAKGGVVLSLAY 342

Query: 281 THKIPVYFLGVGEGINDLEPF 301
             K PV FLG G+  +DL PF
Sbjct: 343 ELKKPVIFLGTGQNYDDLIPF 363


>gi|169630322|ref|YP_001703971.1| cell division protein FtsY-like protein [Mycobacterium abscessus
           ATCC 19977]
 gi|169242289|emb|CAM63317.1| Cell division protein FtsY homolog [Mycobacterium abscessus]
          Length = 458

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/271 (39%), Positives = 160/271 (59%), Gaps = 9/271 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMPLSKP 102
           EE+ED L+ +D+G AV   IV+ L ++  A+ V  +     +L +V  LI ++   L + 
Sbjct: 192 EEVEDTLLIADLGTAVTASIVDRLRSEMAARSVRTEAQARALLREV--LIDELQPELDRS 249

Query: 103 FN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                 + +P V+L+VGVNG GKTT +GKL++ +   G +V+L A DTFR+AA DQL+ W
Sbjct: 250 IKALPHNDKPSVLLIVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQAW 309

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             R  A  V    G+D A++A++A      +  DV+++DTAGRLH  + LM  +GK+ RV
Sbjct: 310 GQRVGAQVVRGAEGADPASVAFDAVDAGIREGADVVVVDTAGRLHTKTGLMDELGKIKRV 369

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           ++R        VL VLD+T GQN L Q  +F  V   TG+ +TK+DGTA+GG +  +   
Sbjct: 370 VERR--ADVDEVLLVLDSTIGQNGLAQARVFADVVDITGVALTKLDGTAKGGIVFHVQRE 427

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             +PV  +G+GEG +DL PF    F   + G
Sbjct: 428 LGVPVKLVGLGEGPDDLAPFEPPAFVDALLG 458


>gi|229258558|gb|ACQ45584.1| cell division protein FtsY [Ectenagena extenta gill symbiont]
          Length = 194

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 110/160 (68%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++   VILVVGVNG GKTT+IGKL+K   + G  VMLAAGDTFR+AAI+QLKIW  R + 
Sbjct: 35  TNETFVILVVGVNGAGKTTLIGKLAKYFQNQGKSVMLAAGDTFRAAAIEQLKIWGQRNNI 94

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V   +G+D A++ ++A++ AQAK +D+L+ DTAGRLH    LM  + K+ RV+ + + 
Sbjct: 95  PVVAKTLGADTASVIFDAYQSAQAKNIDILLADTAGRLHTQKNLMQELSKIKRVITKQNI 154

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +APH  + V+D  +GQN + Q + F+     +G+ +TK+D
Sbjct: 155 NAPHETMLVIDGGSGQNIINQAKEFNKAVNLSGISITKLD 194


>gi|88855272|ref|ZP_01129937.1| signal recognition particle receptor [marine actinobacterium
           PHSC20C1]
 gi|88815800|gb|EAR25657.1| signal recognition particle receptor [marine actinobacterium
           PHSC20C1]
          Length = 289

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/289 (39%), Positives = 165/289 (57%), Gaps = 12/289 (4%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK--RYAKD-- 78
           + S  L   +  + +   +D     +LED +I +D G  +   +++EL     R+  D  
Sbjct: 2   AASWSLSGALKSMFARDTIDAETWSDLEDAMISADFGPDITDSVIDELRASVTRFKTDDP 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
             ++R+L +  E     L P         S RP V+LVVGVNGVGKTT IGK +K +   
Sbjct: 62  ADLKRMLRETLEERLARLDP-----TLTLSARPAVVLVVGVNGVGKTTTIGKFAKFLVGH 116

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVL 197
           G  V++ A DTFR+AA++QL  WA+R  A  V   + G D A++A++  ++AQ   +D+ 
Sbjct: 117 GRTVVVGAADTFRAAAVEQLATWAERGGASIVRPQQQGQDPASVAFQTVERAQRDSIDIA 176

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           IIDTAGRL   S LM  +GK+ RV+++    A   VL VLDATTGQN + Q E F   AG
Sbjct: 177 IIDTAGRLQTKSGLMDELGKIRRVVEKQTEIA--EVLLVLDATTGQNGVAQAEAFIQHAG 234

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            TGL++TK+DG+A+ G ++ +     IP+  +G GEGINDL  F    F
Sbjct: 235 VTGLVITKLDGSAKAGFVLAVQERTGIPIKLVGQGEGINDLTGFTPHVF 283


>gi|91772186|ref|YP_564878.1| signal recognition particle-docking protein FtsY [Methanococcoides
           burtonii DSM 6242]
 gi|91711201|gb|ABE51128.1| signal recognition docking protein FtsY [Methanococcoides burtonii
           DSM 6242]
          Length = 366

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 171/322 (53%), Gaps = 31/322 (9%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITD-----------IISSRRLDDGVREEL 49
           +S  +V+    S+  +L K  AS SLK K G              I+    ++D + E L
Sbjct: 44  VSTPEVSENVSSFEDQLDKTEASPSLKQKIGFAQKAKALVFEREVILDGSDIEDSLWE-L 102

Query: 50  EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPF 103
           E  L+ SDI + VA+ IVE +  +      S +++  +  EL+   L         +  F
Sbjct: 103 EMALLESDIAINVAEAIVESVKEELVG---SRKKLGKNTGELVENALRSAIYKVMSANVF 159

Query: 104 NWDF----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           + D     + +P  I+ +G+NG GKTT I K++K++ D    V++AAGDTFR+ AIDQ+ 
Sbjct: 160 DLDDYIRDAEKPVHIVFIGINGTGKTTTISKMAKRLKDMKYSVVIAAGDTFRAGAIDQIA 219

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I A+R     +  + G D AA+ Y+A + A+A  VDV++ DTAGR+H N  LMA + K+ 
Sbjct: 220 IHAERIGVKLIKHQEGGDPAAVVYDAVQHAKAHNVDVVLSDTAGRMHTNVNLMAQLEKVC 279

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV       +P  ++ V +A  G +A+ + + F+      G I+TK D  ++GG  I I 
Sbjct: 280 RV------SSPDLIIFVDEAVAGNDAVERAQQFNTAVPIHGSILTKTDADSKGGAAISIA 333

Query: 280 VTHKIPVYFLGVGEGINDLEPF 301
                P+ FLG+G+G +DL+ F
Sbjct: 334 YITGKPILFLGMGQGYDDLKKF 355


>gi|332796973|ref|YP_004458473.1| signal recognition particle-docking protein FtsY [Acidianus
           hospitalis W1]
 gi|332694708|gb|AEE94175.1| signal recognition particle-docking protein FtsY [Acidianus
           hospitalis W1]
          Length = 308

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/261 (37%), Positives = 151/261 (57%), Gaps = 21/261 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSK-PFNWD 106
           L+ SD+ + V  KI+E+L +    K V+      D+ EL+ K L       L K  F  +
Sbjct: 46  LLESDVSLEVTDKILEDLKSSLIGKKVNRSE---DLDELVKKSLKNSITEILEKNKFERN 102

Query: 107 F------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                  S +P+VI+  GVNGVGKTT I K++  +  AGLKV+++A DTFR+AA +QL I
Sbjct: 103 LIDEIKKSPKPYVIMFFGVNGVGKTTTIAKVAYMLKKAGLKVIVSASDTFRAAAQEQLAI 162

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
              +     V  + G D A++A++A + A+++ +DV++IDTAGR+H +  L   + +++R
Sbjct: 163 HCQKLEIPLVKGKYGGDPASVAFDAIQAAKSRGIDVVLIDTAGRMHVDKDLTEELKRIVR 222

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           + K      P+  L V+DA  G +AL Q + F  V    G+I+TK+D  A+GG ++ +  
Sbjct: 223 ISK------PNLKLLVIDALAGNDALEQAKYFENVVDYDGVILTKVDADAKGGVVLSLAY 276

Query: 281 THKIPVYFLGVGEGINDLEPF 301
             K PV FLG G+  +DL PF
Sbjct: 277 ELKKPVIFLGTGQNYDDLIPF 297


>gi|332670008|ref|YP_004453016.1| signal recognition particle-docking protein FtsY [Cellulomonas fimi
           ATCC 484]
 gi|332339046|gb|AEE45629.1| signal recognition particle-docking protein FtsY [Cellulomonas fimi
           ATCC 484]
          Length = 406

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/281 (42%), Positives = 172/281 (61%), Gaps = 22/281 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYD-----VSELIHKML- 96
           +ELE+ L+ +D+G     +IV+ L T+   + +     V+ VL D     V   + + L 
Sbjct: 133 DELEETLLLADVGAGPTTEIVDALRTRVRVEGLREPGQVRAVLRDQLLAIVDPSLDRTLG 192

Query: 97  -MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
             P + P   D +  P V+LVVGVNG GKTT +GKL++ +   G  V+L A DTFR+AA 
Sbjct: 193 TAPTTTP---DGATVPAVVLVVGVNGTGKTTTVGKLARVLVAEGRSVVLGAADTFRAAAA 249

Query: 156 DQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           DQL+ W  R     V S+  G+D A++A++A +  +A+ VDV+++DTAGRL N + LM  
Sbjct: 250 DQLETWGSRVGVRTVRSDRDGADPASVAFDAVRTGRAEGVDVVLVDTAGRLQNKAGLMDE 309

Query: 215 IGKMIRVLKRLDPHAPHS-VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
           +GK+ RVL R    AP S VL VLDATTGQN L Q  +F  VAG TG+++TK+DGTA+GG
Sbjct: 310 LGKITRVLTR---EAPLSEVLLVLDATTGQNGLNQARVFAEVAGVTGIVLTKLDGTAKGG 366

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            ++ +     +PV  +G+GEG +DL PF   D  A + G L
Sbjct: 367 IVVAVQRELGVPVKLVGLGEGPDDLAPF---DPEAFVDGIL 404


>gi|320532001|ref|ZP_08032894.1| signal recognition particle-docking protein FtsY [Actinomyces sp.
           oral taxon 171 str. F0337]
 gi|320135765|gb|EFW27820.1| signal recognition particle-docking protein FtsY [Actinomyces sp.
           oral taxon 171 str. F0337]
          Length = 390

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/277 (39%), Positives = 166/277 (59%), Gaps = 13/277 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFN 104
           EE+ED L+ SD+G+ V   +++EL T+      S    +  V  +EL+  +   L +  N
Sbjct: 116 EEIEDTLLTSDLGIEVTTSLMDELRTQAKVLGTSDPEAVRTVLRAELLKLVDPSLDRSLN 175

Query: 105 WDFSHRPHV--------ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
                R           IL+VGVNG GKTT  GKL++ +      V+L A DTFR+AA +
Sbjct: 176 LKRPTRAEGAQAAPAAAILMVGVNGTGKTTTCGKLARVLVAQDKTVVLGAADTFRAAAAE 235

Query: 157 QLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           QL  W +R   D V SE  G+D A++AY+A ++A  ++ DV+++DTAGRL N + LM  +
Sbjct: 236 QLSTWGERVGVDVVRSEKEGADPASVAYDAARRAADQEADVVVVDTAGRLQNKAGLMDEL 295

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
           GK+ RV++++ P     +L VLDATTGQN +RQ ++F    G TG+++TK+DGTA+GG +
Sbjct: 296 GKIKRVMEKIAPVG--EILLVLDATTGQNGMRQAQVFSEAVGITGIVLTKLDGTAKGGIV 353

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           + +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 354 VTVQRELGVPVKLVGLGEGADDLAPFDPEGFVDALLG 390


>gi|254526943|ref|ZP_05138995.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9202]
 gi|221538367|gb|EEE40820.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9202]
          Length = 419

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 177/307 (57%), Gaps = 5/307 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ + + W+ KL +G   T       + D +    L     ++LE LLIR+D+G+    
Sbjct: 105 QISIDEIDWLTKLRRGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDSTD 164

Query: 65  KIVEELLTKRYAK----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           K++  L TK   +    +  ++ +  ++  +I K ++            + +V L+VGVN
Sbjct: 165 KVINSLRTKLNEEVVGGEAGIKFLKQELKLIIDKPIINSGTELLVPQKGKLNVWLLVGVN 224

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAA 179
           GVGKTT +GKL+   S +    ++AA DTFR+AA++QLK+W +R++ D + ++   +D A
Sbjct: 225 GVGKTTTLGKLAYLSSKSNYTTLIAAADTFRAAAVEQLKVWGERSNVDVISNQSKNADPA 284

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+ +  D+L++DTAGRL   + LM  + K+ +++ +  P A    L VLDA
Sbjct: 285 AVVFDAINSAKKRNADLLLVDTAGRLQTKNNLMDELAKIKKIIDKKVPDAIVESLLVLDA 344

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN L+Q + F   A  +G I+TK+DGT+RGG  + +     +P+ F+G GEGI DL 
Sbjct: 345 SQGQNGLKQAKSFAKSADLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIGAGEGIQDLR 404

Query: 300 PFVAKDF 306
           PF + +F
Sbjct: 405 PFNSYEF 411


>gi|50955122|ref|YP_062410.1| signal recognition particle receptor [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50951604|gb|AAT89305.1| signal recognition particle receptor [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 291

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 173/295 (58%), Gaps = 14/295 (4%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDV 79
           T   L   +  + + + +D+   ++LE  LI +D G  V + ++++L  K    R     
Sbjct: 5   TPWSLSGALRGMFAKKTIDETTWDDLETALITADFGPDVTEAVIDDLRVKVGRYRTTDPA 64

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
            +QR+L + + E + ++   L        S RP V+LVVGVNGVGKTT IGK +K +   
Sbjct: 65  DLQRMLRETMGERLSRLDTTLK------LSDRPAVVLVVGVNGVGKTTTIGKFAKFLRSY 118

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVL 197
              V++ A DTFR+AA++QL  WA+R+ A  V   + G D A++A++  ++A++   +++
Sbjct: 119 DRSVVVGAADTFRAAAVEQLATWAERSGAGIVRPQQQGQDPASVAFQTVEKAKSDGTEIV 178

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDTAGRL     LM  + K+ RV+++  P A   VL VLDATTGQN L Q + F   AG
Sbjct: 179 LIDTAGRLQTKGGLMDELSKIKRVVEKQAPIA--EVLLVLDATTGQNGLAQAQAFLEHAG 236

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            TGL++TK+DG+A+GG ++ +     IP+  +G GEGI+DL  F    F+  + G
Sbjct: 237 VTGLVLTKLDGSAKGGFVLAVQERTGIPIKLVGQGEGIDDLTGFTPHVFAQQLVG 291


>gi|239928696|ref|ZP_04685649.1| docking protein [Streptomyces ghanaensis ATCC 14672]
          Length = 400

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q++VE L   R 
Sbjct: 102 RLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVERL---RE 158

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIG 129
              V   R   ++  L+ + L+ L  P         + +  P +++VVGVNG GKTT  G
Sbjct: 159 RVKVLGTRTPEELRGLLRQELITLVGPEMDRTVHTENAAGGPGIVMVVGVNGTGKTTTTG 218

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++A++A K+ 
Sbjct: 219 KLARVLVADGNTVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDPASVAFDAVKEG 278

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATTGQN L Q 
Sbjct: 279 KEMAADAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAPL--DEVLLVLDATTGQNGLVQA 336

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF  + F   
Sbjct: 337 RVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPFEPEAFVDA 396

Query: 310 ITG 312
           + G
Sbjct: 397 LLG 399


>gi|157412348|ref|YP_001483214.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9215]
 gi|157386923|gb|ABV49628.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9215]
          Length = 409

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 177/310 (57%), Gaps = 11/310 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ + + W+ KL +G   T       + D +    L     ++LE LLIR+D+G+    
Sbjct: 95  QISIDEIDWLTKLRRGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDSTD 154

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHVILVV 117
           K++  L TK   + V  +     +  L  ++ + + KP     +        + +V L+V
Sbjct: 155 KVINSLRTKLNEEVVGAE---AGIKFLKKELKLIIDKPIKNSGTELLVPQKGKLNVWLLV 211

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GS 176
           GVNGVGKTT +GKL+   S +    ++AA DTFR+AA++QLK+W +R++ D + ++   +
Sbjct: 212 GVNGVGKTTTLGKLAFLSSKSNYTTLIAAADTFRAAAVEQLKVWGERSNVDVISNQSKNA 271

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A   A+ +  D+L++DTAGRL   + LM  + K+ +++ +  P A    L V
Sbjct: 272 DPAAVVFDAINSAKKRNADLLLVDTAGRLQTKNNLMDELAKIKKIIDKKVPDAIVESLLV 331

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA+ GQN L+Q + F   A  +G I+TK+DGT+RGG  + +     +P+ F+G GEGI 
Sbjct: 332 LDASQGQNGLKQAKSFAKSADLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIGAGEGIK 391

Query: 297 DLEPFVAKDF 306
           DL PF + +F
Sbjct: 392 DLRPFNSYEF 401


>gi|283458195|ref|YP_003362812.1| signal recognition particle GTPase [Rothia mucilaginosa DY-18]
 gi|283134227|dbj|BAI64992.1| signal recognition particle GTPase [Rothia mucilaginosa DY-18]
          Length = 373

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 176/307 (57%), Gaps = 15/307 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    A ++  L +G+  ++S  R+D  V +E+E+ L+ +D+G     ++VE L  +  
Sbjct: 75  RLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLLADLGSEPTTRLVEALQQRVR 134

Query: 76  AKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG-KTTVIGK 130
            +  S    V+++L +  EL+  +   + +      S     +++V       KTT +GK
Sbjct: 135 VEGTSNPAAVKKMLRE--ELVKIVRPDMDRELKTAGSDGNPGVVLVVGVNGVGKTTTVGK 192

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQA 189
           +++ M   G  ++L A DTFR+AA +QL  W DR     V SE  G+D A++A++A K  
Sbjct: 193 IARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEKEGADPASVAFDAVKAG 252

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQ 248
           + + VD +++DTAGRL N S LM  +GK+ RV+++    AP   VL V+DATTGQN + Q
Sbjct: 253 KEQGVDTVLVDTAGRLQNKSGLMDQLGKIKRVIEK---EAPVTEVLLVIDATTGQNGMVQ 309

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F  +   TG+++TK+DGTA+GG ++ I     +PV  +G+GEG +DL PF   D  A
Sbjct: 310 AKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLGEGPDDLAPF---DPEA 366

Query: 309 VITGCLD 315
            +   LD
Sbjct: 367 FVDALLD 373


>gi|229258556|gb|ACQ45583.1| cell division protein FtsY [Vesicomya gigas gill symbiont]
          Length = 194

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 109/159 (68%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   VILVVGVNG GKTT+IGKL+K   + G  VMLAAGDTFR+AAI+QLKIW  R +  
Sbjct: 36  NETFVILVVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAAIEQLKIWGQRNNIP 95

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +   +G+D A++ ++A++ AQAK +D+L+ DTAGRLH    LM  + K+ RV+ + + +
Sbjct: 96  VIAKTLGADTASVIFDAYQSAQAKNIDILLADTAGRLHTQDNLMQELTKIKRVITKQNIN 155

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           APH  + V+D  +GQN + Q + F+     +G+ +TK+D
Sbjct: 156 APHETMLVIDGGSGQNVINQAKEFNKAVNLSGISITKLD 194


>gi|111225154|ref|YP_715948.1| cell division protein FtsY [Frankia alni ACN14a]
 gi|111152686|emb|CAJ64427.1| Cell division protein FtsY [Frankia alni ACN14a]
          Length = 422

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/269 (39%), Positives = 153/269 (56%), Gaps = 6/269 (2%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELL--TKRYAKDVSVQRVLYDVSELIHKMLMP 98
           LD+   E++E  L+ +D+GV    ++V  L   TK        Q       EL+ ++   
Sbjct: 148 LDEETWEDVEATLLLADVGVVATGELVAALRERTKVLGASTPAQARAMLRDELLAQVGTA 207

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             +        RP V+LVVGVNG GKTT  GK+++ +   G  V+L A DTFR+AA DQL
Sbjct: 208 TDRSLRTSVPDRPAVVLVVGVNGTGKTTTCGKVARLLVAEGRTVVLGAADTFRAAAADQL 267

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + W +R  A  V    G D A++A++A K+      D ++IDTAGRLH  + LM  + K+
Sbjct: 268 QTWGERVGAVTVRGAEGGDPASVAFDAVKRGIDSAADTVLIDTAGRLHTKTGLMDELAKI 327

Query: 219 IRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            RV+ +   H P   VL VLDATTGQNAL Q  +F      +G+++TK+DGTA+GG +I 
Sbjct: 328 KRVVGK---HGPVDEVLLVLDATTGQNALVQARVFTEAVELSGVVLTKLDGTAKGGIVIA 384

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +     +PV  +G+GEG +DL PF  + F
Sbjct: 385 VQRELGVPVKLIGLGEGPDDLAPFEPEAF 413


>gi|290559218|gb|EFD92569.1| signal recognition particle receptor [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 386

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 158/293 (53%), Gaps = 36/293 (12%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTK------------RYAKDV---SVQRVL-- 85
           D +  E++ +L+ +++ ++V + I ++L  K            +Y  +V   S+   L  
Sbjct: 108 DMIYSEIKTVLLENNVALSVLENIQKDLKNKLVGESVSMFGNKKYLNNVIRDSIANTLIG 167

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           YD  E I K+            S +P VILV+GVNG GKTT I KL K     GLK ++A
Sbjct: 168 YDKEEFISKIK-----------SKKPFVILVIGVNGAGKTTTIAKLCKLFLSKGLKPVIA 216

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           AGDTFR+A+I+QL+I A +     +    GSD AA+A++A K A + K DV++IDTAGR 
Sbjct: 217 AGDTFRAASIEQLEIHAKKLKVPIIKHTYGSDPAAVAFDAIKHANSAKEDVVVIDTAGRS 276

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             N  L+  + K+ RV K      P   + + DA TG + ++Q E++    G    I++K
Sbjct: 277 DINKNLIEELKKVKRVSK------PDMTIFIGDALTGNDVVKQAEVYDKEIGIDANILSK 330

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP--FVAKDFSAVITGCLDY 316
            D   +GG ++ I    K P+ FLGVG+G +DL P  F A  FSA +  C  Y
Sbjct: 331 ADVDKKGGAVLSISYITKKPILFLGVGQGSDDLIPVSFSAIAFSAPMILCHSY 383


>gi|291437021|ref|ZP_06576411.1| prokaryotic docking protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339916|gb|EFE66872.1| prokaryotic docking protein [Streptomyces ghanaensis ATCC 14672]
          Length = 409

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q++VE L   R 
Sbjct: 111 RLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVERL---RE 167

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIG 129
              V   R   ++  L+ + L+ L  P         + +  P +++VVGVNG GKTT  G
Sbjct: 168 RVKVLGTRTPEELRGLLRQELITLVGPEMDRTVHTENAAGGPGIVMVVGVNGTGKTTTTG 227

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++A++A K+ 
Sbjct: 228 KLARVLVADGNTVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDPASVAFDAVKEG 287

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATTGQN L Q 
Sbjct: 288 KEMAADAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAPL--DEVLLVLDATTGQNGLVQA 345

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF  + F   
Sbjct: 346 RVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPFEPEAFVDA 405

Query: 310 ITG 312
           + G
Sbjct: 406 LLG 408


>gi|126465987|ref|YP_001041096.1| signal recognition particle-docking protein FtsY [Staphylothermus
           marinus F1]
 gi|126014810|gb|ABN70188.1| signal recognition particle-docking protein FtsY [Staphylothermus
           marinus F1]
          Length = 295

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/294 (33%), Positives = 159/294 (54%), Gaps = 31/294 (10%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           AS  L  KE + D+I   + +          LI +D+   VA++I  +L+      +   
Sbjct: 16  ASALLFSKEQLMDLIDEFKFE----------LISNDVAYDVAEEITTKLV------EAVE 59

Query: 82  QRVLYDVSELIHKMLMPLSKPFN----WDFSH-----RPHVILVVGVNGVGKTTVIGKLS 132
            +++ D   LI  +   +   F+     D  H     +P++I+ +GVNGVGKTT I K +
Sbjct: 60  NKIVRDKESLIEFLKKTIRSYFDSVELIDIFHEASKTKPYIIVFLGVNGVGKTTTIAKTA 119

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
               D G K ++ A DTFR+ A +QL+I  +RT       + G+D A++A++A + A+ +
Sbjct: 120 VLFRDKGFKPLMVAADTFRAGAQEQLRIHGERTGIPVFMGKYGADPASIAFDAIRHAETR 179

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV++IDTAGR+H +S L+  + K+IRV K      PH  + V+DA TG +A+ Q   F
Sbjct: 180 GYDVVLIDTAGRMHTDSNLVDELRKIIRVAK------PHRKILVVDALTGNDAIEQAVFF 233

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
               G   +I+TK+D   +GG  + IV + + P+  +GVG+G  DL+PF   +F
Sbjct: 234 DKAVGVDAVIVTKVDAYEQGGVPLSIVYSIRKPIIMIGVGQGYKDLKPFNIDEF 287


>gi|255327564|ref|ZP_05368631.1| signal recognition particle-docking protein FtsY [Rothia
           mucilaginosa ATCC 25296]
 gi|255295458|gb|EET74808.1| signal recognition particle-docking protein FtsY [Rothia
           mucilaginosa ATCC 25296]
          Length = 369

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 176/307 (57%), Gaps = 15/307 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    A ++  L +G+  ++S  R+D  V +E+E+ L+ +D+G     ++VE L  +  
Sbjct: 71  RLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLLADLGSEPTTRLVEALQQRVR 130

Query: 76  AKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG-KTTVIGK 130
            +  S    V+++L +  EL+  +   + +      S     +++V       KTT +GK
Sbjct: 131 VEGTSNPAAVKKMLRE--ELVKIVRPDMDRELKTAGSDGNPGVVLVVGVNGVGKTTTVGK 188

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQA 189
           +++ M   G  ++L A DTFR+AA +QL  W DR     V SE  G+D A++A++A K  
Sbjct: 189 IARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEKEGADPASVAFDAVKAG 248

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQ 248
           + + VD +++DTAGRL N S LM  +GK+ RV+++    AP   VL V+DATTGQN + Q
Sbjct: 249 KEQGVDTVLVDTAGRLQNKSGLMDQLGKIKRVIEK---EAPVTEVLLVIDATTGQNGMVQ 305

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F  +   TG+++TK+DGTA+GG ++ I     +PV  +G+GEG +DL PF   D  A
Sbjct: 306 AKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLGEGPDDLAPF---DPEA 362

Query: 309 VITGCLD 315
            +   LD
Sbjct: 363 FVDALLD 369


>gi|16950583|gb|AAL32277.1| signal recognition particle receptor [Arcanobacterium pyogenes]
          Length = 397

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/298 (39%), Positives = 176/298 (59%), Gaps = 14/298 (4%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           +G  + S  L   +  I+S   L +   EELED L+ +D+G+    ++++ L T+   K 
Sbjct: 98  RGRLAASGALGRTLLSILSRGDLSEADWEELEDTLLMADVGLDATTELMDILRTQTKVKA 157

Query: 79  VS----VQRVLYDVSELIHKMLMPLSKPFNW-----DFSHRPHVILVVGVNGVGKTTVIG 129
            +    V+ +L    ELI  +     +  N      D S  P  +L+VGVNG GKTT  G
Sbjct: 158 TTDAGEVRAILR--QELIKLVGADTDRSLNLEPVIDDDSRHPAALLIVGVNGTGKTTTTG 215

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQ 188
           KL++ +   G +++L A DTFR+AA DQL  W  R   D V S+  G+D A++A+EA + 
Sbjct: 216 KLARLLVADGKRLVLGAADTFRAAAADQLSTWGARVGVDVVRSDREGADPASVAFEAVRV 275

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+I+DTAGRL N + LM  +GK+ RV+++  P     VL VLDATTGQN + Q
Sbjct: 276 ARESAADVVIVDTAGRLQNKAGLMDELGKIKRVMEKSAPL--REVLLVLDATTGQNGMSQ 333

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            ++F  VAG TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF   DF
Sbjct: 334 AKVFAEVAGITGIVLTKLDGTAKGGIVISVQRELGVPVKLVGLGEGADDLAPFDPTDF 391


>gi|318056554|ref|ZP_07975277.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           SA3_actG]
 gi|318080907|ref|ZP_07988239.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           SA3_actF]
          Length = 407

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/322 (36%), Positives = 178/322 (55%), Gaps = 27/322 (8%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 98  EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQ 157

Query: 65  KIVEELLTK-------------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           ++VE L  +                ++  +  V  D    +H    P           +P
Sbjct: 158 ELVERLRERVRVLGTRTTDELRTLLREELLTLVGADTDRTVHTEAAP----------DKP 207

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            +++VVGVNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V 
Sbjct: 208 GIVMVVGVNGTGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVR 267

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP- 230
              G D A++A++A K+  A+K D ++IDTAGRLH  + LM  +GK+ RV+++    AP 
Sbjct: 268 GPEGGDPASIAFDAVKEGIAEKADAVLIDTAGRLHTKTGLMDELGKVKRVVEK---QAPV 324

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G
Sbjct: 325 DEVLLVLDATTGQNGLVQARVFAEVVSITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIG 384

Query: 291 VGEGINDLEPFVAKDFSAVITG 312
           +GEG +DL PF    F   + G
Sbjct: 385 LGEGADDLAPFEPGAFVDALIG 406


>gi|296394653|ref|YP_003659537.1| signal recognition particle-docking protein FtsY [Segniliparus
           rotundus DSM 44985]
 gi|296181800|gb|ADG98706.1| signal recognition particle-docking protein FtsY [Segniliparus
           rotundus DSM 44985]
          Length = 425

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/260 (39%), Positives = 157/260 (60%), Gaps = 9/260 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKP 102
           E++E  L+ +D+G +  + ++++L       +V      + VL +V  LI ++   L + 
Sbjct: 159 EDIETTLLAADLGASTTEHVIDKLRAALARAEVRSEAQARAVLKEV--LIGELKPELDRS 216

Query: 103 FN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                 + RP V+LVVGVNG GKTT  GKL++ +   G +V+L A DTFR+AA+DQL+ W
Sbjct: 217 VRALPHAERPSVVLVVGVNGTGKTTTTGKLARVLIADGRRVLLGAADTFRAAAVDQLQTW 276

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             R  A+ V    G+D A++A+EA ++      DV++IDTAGRLH  + LM  +GK+ RV
Sbjct: 277 GRRVGAEVVTGAEGADPASVAFEAVRRGVETGADVVLIDTAGRLHTKTGLMDELGKIKRV 336

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           ++R    A   V+ VLDAT GQN L Q ++F  V   T + +TK+DGTA+GG +  +   
Sbjct: 337 VER--KAAVDEVVLVLDATIGQNGLHQAKVFSEVVDVTAVALTKLDGTAKGGIVFAVQQE 394

Query: 282 HKIPVYFLGVGEGINDLEPF 301
             +PV  +G+GEG +DL PF
Sbjct: 395 LGVPVKLVGLGEGKDDLAPF 414


>gi|311113793|ref|YP_003985015.1| cell division protein FtsY [Rothia dentocariosa ATCC 17931]
 gi|310945287|gb|ADP41581.1| cell division protein FtsY [Rothia dentocariosa ATCC 17931]
          Length = 367

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 183/314 (58%), Gaps = 16/314 (5%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S   +   S   + +L    A ++  L +G+  ++S  R+D  V +E+E+ L+ +D+G  
Sbjct: 55  SRYDIPDPSAGRLVRLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLMADLGAE 114

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VI 114
              ++VE L  +   +          V +++H+ L+ +  P   D   +         V+
Sbjct: 115 PTTRLVEALQKRVRVEGTDNPAA---VKKMLHEELLEIIGP-TMDRELKTEGTDGNPGVV 170

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           LVVGVNGVGKTT +GK+++ M   G  ++L A DTFR+AA +QL  W DR     V SE 
Sbjct: 171 LVVGVNGVGKTTTVGKIARVMVADGNSLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEK 230

Query: 175 -GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HS 232
            G+D A++A++A K A+A+ +  +++DTAGRL N + LM  +GK+ RV+++    AP   
Sbjct: 231 EGADPASVAFDAVKTAKAEGIGTVLVDTAGRLQNKAGLMDQLGKIKRVIEK---EAPVTE 287

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL V+DATTGQN + Q ++F  +   TG+++TK+DGTA+GG ++ I     +PV  +G+G
Sbjct: 288 VLLVIDATTGQNGMVQAKVFGEIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLVGLG 347

Query: 293 EGINDLEPFVAKDF 306
           EG +DL PF  + F
Sbjct: 348 EGPDDLAPFDPEGF 361


>gi|300741690|ref|ZP_07071711.1| signal recognition particle-docking protein FtsY [Rothia
           dentocariosa M567]
 gi|300380875|gb|EFJ77437.1| signal recognition particle-docking protein FtsY [Rothia
           dentocariosa M567]
          Length = 371

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 183/314 (58%), Gaps = 16/314 (5%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S   +   S   + +L    A ++  L +G+  ++S  R+D  V +E+E+ L+ +D+G  
Sbjct: 59  SRYDIPDPSAGRLVRLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLMADLGAE 118

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-------VI 114
              ++VE L  +   +          V +++H+ L+ +  P   D   +         V+
Sbjct: 119 PTTRLVEALQKRVRVEGTDNPAA---VKKMLHEELLEIIGP-TMDRELKTEGTDGNPGVV 174

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           LVVGVNGVGKTT +GK+++ M   G  ++L A DTFR+AA +QL  W DR     V SE 
Sbjct: 175 LVVGVNGVGKTTTVGKIARVMVADGNSLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEK 234

Query: 175 -GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HS 232
            G+D A++A++A K A+A+ +  +++DTAGRL N + LM  +GK+ RV+++    AP   
Sbjct: 235 EGADPASVAFDAVKTAKAEGIGTVLVDTAGRLQNKAGLMDQLGKIKRVIEK---EAPVTE 291

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL V+DATTGQN + Q ++F  +   TG+++TK+DGTA+GG ++ I     +PV  +G+G
Sbjct: 292 VLLVIDATTGQNGMVQAKVFGEIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLVGLG 351

Query: 293 EGINDLEPFVAKDF 306
           EG +DL PF  + F
Sbjct: 352 EGPDDLAPFDPEGF 365


>gi|333024184|ref|ZP_08452248.1| putative signal recognition particle FtsY [Streptomyces sp. Tu6071]
 gi|332744036|gb|EGJ74477.1| putative signal recognition particle FtsY [Streptomyces sp. Tu6071]
          Length = 407

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/322 (36%), Positives = 178/322 (55%), Gaps = 27/322 (8%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 98  EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQ 157

Query: 65  KIVEELLTK-------------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           ++VE L  +                ++  +  V  D    +H    P           +P
Sbjct: 158 ELVERLRERVRVLGTRTTDELRTLLREELLTLVGADTDRTVHTEAAP----------DKP 207

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            +++VVGVNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V 
Sbjct: 208 GIVMVVGVNGTGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVR 267

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP- 230
              G D A++A++A K+  A+K D ++IDTAGRLH  + LM  +GK+ RV+++    AP 
Sbjct: 268 GPEGGDPASIAFDAVKEGIAEKADAVLIDTAGRLHTKTGLMDELGKVKRVVEK---QAPV 324

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G
Sbjct: 325 DEVLLVLDATTGQNGLVQARVFAEVVSITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIG 384

Query: 291 VGEGINDLEPFVAKDFSAVITG 312
           +GEG +DL PF    F   + G
Sbjct: 385 LGEGADDLAPFEPGAFVDALIG 406


>gi|296171447|ref|ZP_06852733.1| cell division protein FtsY [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894133|gb|EFG73893.1| cell division protein FtsY [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 434

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 169/306 (55%), Gaps = 13/306 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + +L    A +   +   +  +I    LD+   +++ED L+ +D+G  V + ++ +L  +
Sbjct: 135 LERLRGRLARSQNAIGRSVLGLIGGGDLDEDAWQDVEDTLLVADLGPVVTESVMSQLRGR 194

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTT 126
                V   R   D   ++  +L+    P + D S R       P V+LVVGVNG GKTT
Sbjct: 195 LAGGAV---RTEADAKAILRDVLIRELHP-DMDRSIRALPHDDHPSVLLVVGVNGTGKTT 250

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A+ V    G+D A++A++A 
Sbjct: 251 TVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWASRVGAEVVRGAEGADPASVAFDAV 310

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +  A   DV++IDTAGRLH    LM  + K+ RV+ R    A   VL VLDAT GQN L
Sbjct: 311 DKGIASGADVVLIDTAGRLHTKVGLMDELDKVKRVVTRR--AAVDEVLLVLDATIGQNGL 368

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F  V   TG ++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    F
Sbjct: 369 AQARVFAEVVEITGAVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAF 428

Query: 307 SAVITG 312
              + G
Sbjct: 429 VDALLG 434


>gi|29829196|ref|NP_823830.1| signal recognition particle [Streptomyces avermitilis MA-4680]
 gi|29606302|dbj|BAC70365.1| putative signal recognition particle receptor [Streptomyces
           avermitilis MA-4680]
          Length = 409

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 180/315 (57%), Gaps = 13/315 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q
Sbjct: 100 EVPEPTAGRLVRLRTRLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQ 159

Query: 65  KIVEEL------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           ++VE L      L  R  +++        +  L+ +    +    N D    P +++VVG
Sbjct: 160 ELVERLRERVKVLGTRTPQELRGLLREELLQLLVPEFDREVRTDSNLDT---PGIVMVVG 216

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D 
Sbjct: 217 VNGTGKTTTTGKLARVLVADGKHVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDP 276

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++A++A K+   +  DV++IDTAGRLH  + LM  +GK+ RV+++   HAP   VL VL
Sbjct: 277 ASIAFDAVKEGIEEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPLDEVLLVL 333

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +D
Sbjct: 334 DATTGQNGLVQARVFAEVVNITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADD 393

Query: 298 LEPFVAKDFSAVITG 312
           L PF  + F   + G
Sbjct: 394 LAPFEPEAFVDALVG 408


>gi|224013926|ref|XP_002296627.1| signal recognition particle alpha [Thalassiosira pseudonana
           CCMP1335]
 gi|220968979|gb|EED87323.1| signal recognition particle alpha [Thalassiosira pseudonana
           CCMP1335]
          Length = 287

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/277 (36%), Positives = 160/277 (57%), Gaps = 22/277 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIH-KMLMPLSKPFN 104
           ++LED L+++D+G+A    ++EE    R+ ++ S +    D +  L+  K+L  L    N
Sbjct: 11  DQLEDTLLQADLGMATTDDVLEE---ARFLREESTEIFSRDDIKALLRGKLLEALGPSTN 67

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
                  H I+  G NG+GKTT IGKL+ ++ +++G KV+LAA DTFR+ A+ QL+ WAD
Sbjct: 68  NPTPLTIHFIM--GANGMGKTTTIGKLAHRLKTESGQKVLLAACDTFRAGAVAQLEQWAD 125

Query: 164 RTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           R   D F  +E  +  +A+ + A  +A  +  +VL++DT+GRL NN  L A + KM RV+
Sbjct: 126 RAQVDCFSPNESTNGPSAVLFGALDKAIKEDYNVLLVDTSGRLSNNDALTAELVKMKRVI 185

Query: 223 -KRL------------DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            KR+            +   PH  L V+DA  G+ AL   + +    G +GLI+TK+DG+
Sbjct: 186 QKRMSTKFDSAVKPIPNESVPHETLLVIDAAQGRMALDSAKQWDKEVGLSGLILTKLDGS 245

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A+GG ++ +     +PV  +GVGEG+ DL  F  + F
Sbjct: 246 AKGGSVVAVSRELGLPVKLVGVGEGLEDLRDFEPESF 282


>gi|294786173|ref|ZP_06751427.1| signal recognition particle-docking protein FtsY [Parascardovia
           denticolens F0305]
 gi|315227380|ref|ZP_07869167.1| cell division protein FtsY [Parascardovia denticolens DSM 10105]
 gi|294485006|gb|EFG32640.1| signal recognition particle-docking protein FtsY [Parascardovia
           denticolens F0305]
 gi|315119830|gb|EFT82963.1| cell division protein FtsY [Parascardovia denticolens DSM 10105]
          Length = 396

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 121/314 (38%), Positives = 178/314 (56%), Gaps = 16/314 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L    A +S    + +  I+S   L++   E++ED L+  D+G   ++++V +L 
Sbjct: 89  SRLVRLRAKLARSSNPFGKALFSILSQDNLNESDWEDVEDTLLLVDVGAEASERLVSQLR 148

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPH------VILVVGVNGV 122
           T    +     + ++D   ++   L+ L  P   D S    RP        I++VGVNG 
Sbjct: 149 TDARVQGSKDPQAVHD---MLRAKLLDLVDP-GMDRSLAAERPESVGKTSAIIMVGVNGS 204

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAAL 181
           GKTT  GKL++     G  V+L A DTFR+AA DQL+ W  R     V S+  G+D A++
Sbjct: 205 GKTTTSGKLARLFVAEGKSVVLGAADTFRAAAADQLETWGSRVGVPVVRSDKEGADPASV 264

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A+EA ++AQ  K DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDATT
Sbjct: 265 AFEAAQKAQEAKADVLIIDTAGRLQNKANLMDELGKIRRVTEKTLPV--DEVLLVLDATT 322

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN + Q  +F    G TG+++TK+DG+ARGG +I +     +PV  +G+GEG +DL PF
Sbjct: 323 GQNGMEQARVFAEAIGITGVVLTKLDGSARGGIVISVQQALGVPVKLVGLGEGPDDLAPF 382

Query: 302 VAKDFSAVITGCLD 315
             + F   I G  D
Sbjct: 383 DPESFVDGIIGDED 396


>gi|326422481|gb|EGD71879.1| Signal recognition particle receptor [Candidatus Parvarchaeum
           acidophilus ARMAN-5_'5-way FS']
          Length = 378

 Score =  159 bits (401), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/287 (35%), Positives = 155/287 (54%), Gaps = 34/287 (11%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTK------------RYAKDV---SVQRVL-- 85
           D +  E++ +L+ +++ ++V + I ++L  K            +Y  +V   S+   L  
Sbjct: 108 DMIYSEIKTVLLENNVALSVLENIQKDLKNKLVGESVSMFGNKKYLNNVIRDSIANTLIG 167

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           YD  E I K+            S +P VILV+GVNG GKTT I KL K     GLK ++A
Sbjct: 168 YDKEEFISKIK-----------SKKPFVILVIGVNGAGKTTTIAKLCKLFLSKGLKPVIA 216

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           AGDTFR+A+I+QL+I A +     +    GSD AA+A++A K A + K DV++IDTAGR 
Sbjct: 217 AGDTFRAASIEQLEIHAKKLKVPIIKHTYGSDPAAVAFDAIKHANSAKEDVVVIDTAGRS 276

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             N  L+  + K+ RV K      P   + + DA TG + ++Q E+F    G    I++K
Sbjct: 277 DINKNLIEELKKVKRVSK------PDMTIFIGDALTGNDVVKQAEVFDKEIGIDANILSK 330

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            D   +GG ++ I    K P+ FLGVG+G +DL PF  +  +  I G
Sbjct: 331 ADVDKKGGAVLSISYITKKPILFLGVGQGYDDLIPFNKEKTAEFILG 377


>gi|13508164|ref|NP_110113.1| cell division protein FtsY [Mycoplasma pneumoniae M129]
 gi|2500880|sp|P75362|FTSY_MYCPN RecName: Full=Cell division protein ftsY homolog
 gi|1674100|gb|AAB96064.1| cell division protein FtsY [Mycoplasma pneumoniae M129]
 gi|301633304|gb|ADK86858.1| signal recognition particle-docking protein FtsY [Mycoplasma
           pneumoniae FH]
          Length = 348

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 169/325 (52%), Gaps = 20/325 (6%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +NQK   + L+   K    FA+T  KL      +      ++  +E L + L+  DIG  
Sbjct: 33  ANQKSYYQGLN---KSANSFANTINKLAANYVTV------NEQFQESLFEELVLLDIGYH 83

Query: 62  VAQKI----VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVI 114
            A KI    V+EL  +R +    +Q ++ D  +LI   +    K F  D +   ++ +V 
Sbjct: 84  AATKICDAIVQELKLQRVSDPQLIQEIIVD--KLIVYYIQ--DKLFETDLTVEANKTNVY 139

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L VGVNGVGKTT + KL+ +++    +V++ AGDTFR+ A+ QL  WA R   D V    
Sbjct: 140 LFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNP 199

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             +  A+ +   +Q    + D ++ DT+GRL N + LM  + K+ ++++++    P   L
Sbjct: 200 KEETPAVIFRGVQQGIQNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQKVSSAKPQETL 259

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLD TTGQ+ L Q ++F+     TG+I+TKMD +++GG ++ I     +PV  +G GE 
Sbjct: 260 LVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGET 319

Query: 295 INDLEPFVAKDFSAVITGCLDYGEE 319
             DL  F  + +   +T  L    E
Sbjct: 320 TADLAAFDLEQYVLGLTKNLSLNHE 344


>gi|326771791|ref|ZP_08231076.1| signal recognition particle-docking protein FtsY [Actinomyces
           viscosus C505]
 gi|326637924|gb|EGE38825.1| signal recognition particle-docking protein FtsY [Actinomyces
           viscosus C505]
          Length = 403

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 112/278 (40%), Positives = 172/278 (61%), Gaps = 15/278 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMP------ 98
           EE+ED L+ SD+G+ V   +++EL T+      S    +  V  +EL+ K++ P      
Sbjct: 129 EEIEDTLLTSDLGIEVTTSLMDELRTQAKVLGTSDPEAVRTVLRAELL-KLVDPSLDRSL 187

Query: 99  -LSKPFNWDFSH-RPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
            L +P   + +  +P   IL+VGVNG GKTT  GKL++ +      V+L A DTFR+AA 
Sbjct: 188 NLERPTPAEGAQGKPAAAILMVGVNGTGKTTTCGKLARVLVAQDRTVVLGAADTFRAAAA 247

Query: 156 DQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           +QL  W +R   D V SE  G+D A++AY+A  +A A++ DV+++DTAGRL N + LM  
Sbjct: 248 EQLSTWGERVGVDVVRSEKEGADPASVAYDAACEAAAQEADVVVVDTAGRLQNKAGLMDE 307

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           +GK+ RV++++ P     +L VLDATTGQN +RQ ++F    G TG+++TK+DGTA+GG 
Sbjct: 308 LGKIRRVMEKIAPVG--EILLVLDATTGQNGMRQAQVFSEAVGVTGIVLTKLDGTAKGGI 365

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           ++ +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 366 VVTVQKELGVPVKLVGLGEGADDLAPFDPEGFVDALLG 403


>gi|295836302|ref|ZP_06823235.1| signal recognition particle FtsY [Streptomyces sp. SPB74]
 gi|295825944|gb|EFG64559.1| signal recognition particle FtsY [Streptomyces sp. SPB74]
          Length = 411

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 117/322 (36%), Positives = 178/322 (55%), Gaps = 27/322 (8%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 102 EVPEPTAGRLVRLRTRLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQ 161

Query: 65  KIVEELLTK-------------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           ++VE L  +                ++  +  V  D    +H    P           +P
Sbjct: 162 ELVERLRERVRVLGTRTPDELRTLLREELLTLVGADTDRTVHTEAAP----------DKP 211

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            +++VVGVNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V 
Sbjct: 212 GIVMVVGVNGTGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVR 271

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP- 230
              G D A++A++A K+  A+K D ++IDTAGRLH  + LM  +GK+ RV+++    AP 
Sbjct: 272 GPEGGDPASIAFDAVKEGVAEKADAVLIDTAGRLHTKTGLMDELGKVKRVVEK---QAPV 328

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G
Sbjct: 329 DEVLLVLDATTGQNGLIQARVFAEVVSITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIG 388

Query: 291 VGEGINDLEPFVAKDFSAVITG 312
           +GEG +DL PF    F   + G
Sbjct: 389 LGEGADDLAPFEPGAFVDALIG 410


>gi|229258568|gb|ACQ45589.1| cell division protein FtsY [Calyptogena ponderosa endosymbiont]
 gi|229258570|gb|ACQ45590.1| cell division protein FtsY [Vesicomya cordata gill symbiont]
          Length = 194

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 109/159 (68%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   VILVVGVNG GKTT+IGK++K   + G  VMLAAGDTFR+AA++QLK+W  R +  
Sbjct: 36  NETFVILVVGVNGAGKTTLIGKMAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGQRNNIP 95

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V    G+D A++ ++A + AQAK +D+LI DTAGRLH  + LM  + K+ RV+ + + +
Sbjct: 96  VVAQTTGADTASVIFDACQSAQAKNIDILIADTAGRLHTQNNLMQELAKIKRVIAKHNAN 155

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           APH  + V+D  +GQNA+ Q + F+     +G+ +TK+D
Sbjct: 156 APHETMLVIDGGSGQNAINQAKEFNKAVTLSGISITKLD 194


>gi|329936732|ref|ZP_08286439.1| Signal recognition particle receptor protein [Streptomyces
           griseoaurantiacus M045]
 gi|329303962|gb|EGG47845.1| Signal recognition particle receptor protein [Streptomyces
           griseoaurantiacus M045]
          Length = 398

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 178/301 (59%), Gaps = 7/301 (2%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q++VE L  + R
Sbjct: 100 RLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVERLRERVR 159

Query: 75  YAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLS 132
                + Q +   + E +  +L+P   +    D +   P +++VVGVNG GKTT  GKL+
Sbjct: 160 VLGTRTPQELRTLLREELLTILVPEFDRTVKTDSNLDTPGIVMVVGVNGTGKTTTTGKLA 219

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           + +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++A++A K+    
Sbjct: 220 RVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIEA 279

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEM 251
             DV++IDTAGRLH  + LM  +GK+ RV+++   HAP   VL VLDATTGQN L Q  +
Sbjct: 280 GADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPLDEVLLVLDATTGQNGLVQARV 336

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  V   +G+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF  + F   + 
Sbjct: 337 FAEVVDISGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPFEPEAFVDALI 396

Query: 312 G 312
           G
Sbjct: 397 G 397


>gi|297571145|ref|YP_003696919.1| signal recognition particle-docking protein FtsY [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931492|gb|ADH92300.1| signal recognition particle-docking protein FtsY [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 395

 Score =  158 bits (400), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 116/282 (41%), Positives = 168/282 (59%), Gaps = 9/282 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT--KRYAKDVSVQRVL 85
           L + +  I+S   L     EELE+ L+ +D+G+     I++ L T  K    D  V+ +L
Sbjct: 114 LGKALLSILSRGELSAADWEELEETLLMADVGLDATTDILDSLRTAVKVAGSDADVRALL 173

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
              +EL+  + +   +  N      P  IL+VGVNG GKTT  GKL++ +      V+L 
Sbjct: 174 R--TELLKAVHIDKDRSLN--LGAAPSTILMVGVNGTGKTTTTGKLARLLVAEEHSVLLG 229

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           A DTFR+AA DQL  W +R   D V S+  G+D A++A+EA KQ     VDV+I+DTAGR
Sbjct: 230 AADTFRAAAADQLSTWGERVGVDVVRSDREGADPASVAFEAVKQGADAGVDVVIVDTAGR 289

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           L N + LM  +GK+ RV+++  P     VL VLDATTGQN +RQ E+F   AG TG++++
Sbjct: 290 LQNKAGLMDELGKIKRVMEKTVPTG--EVLLVLDATTGQNGMRQAEVFAEAAGITGIVLS 347

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           K+DG+A+GG +I +     +PV F+G+GEG +D  PF    F
Sbjct: 348 KLDGSAKGGIVISVQRALGVPVKFVGLGEGADDFAPFDPSTF 389


>gi|291454401|ref|ZP_06593791.1| signal recognition particle [Streptomyces albus J1074]
 gi|291357350|gb|EFE84252.1| signal recognition particle [Streptomyces albus J1074]
          Length = 411

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 171/300 (57%), Gaps = 5/300 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q++VE L  +  
Sbjct: 113 RLRARLARSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVVPTQELVERLRERVR 172

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLS 132
                  + L  +       L+    P      +    P V++VVGVNG GKTT  GKL+
Sbjct: 173 VLGTRTPQELRTLLREELLKLVATDAPRAVKTDNGLETPAVVMVVGVNGTGKTTTTGKLA 232

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           + +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++A++A K+  A+
Sbjct: 233 RVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAE 292

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATTGQN L Q  +F
Sbjct: 293 HADVVLIDTAGRLHTKAGLMDELGKVKRVVEKQAPL--DEVLLVLDATTGQNGLVQARVF 350

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 351 AEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFDPEAFVDALIG 410


>gi|282855440|ref|ZP_06264761.1| signal recognition particle-docking protein FtsY [Pyramidobacter
           piscolens W5455]
 gi|282586736|gb|EFB91983.1| signal recognition particle-docking protein FtsY [Pyramidobacter
           piscolens W5455]
          Length = 309

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/276 (37%), Positives = 168/276 (60%), Gaps = 6/276 (2%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKM--LM 97
           +D+    +LED+LI  D+G+  A+ ++ E+      +    + +L    SEL+ ++  + 
Sbjct: 30  IDEDFWLDLEDVLIAGDVGLETAEALLGEMRAYHAQRRCDGKELLRHFKSELVKRLGGVP 89

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            +  P      +    IL+VGVNG GKTT  GKL+     +G KV++AA DTFR+AAI+Q
Sbjct: 90  RMGAPL-LSGENGLAAILMVGVNGSGKTTTTGKLAWLYKKSGKKVIVAAADTFRAAAIEQ 148

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W +++    +  + G D+AA+ ++A   A++   DVLI+DTAGRL +   LM  +GK
Sbjct: 149 LQVWGEKSGIRVIAQKQGGDSAAVVFDALSAARSSGADVLIVDTAGRLQSKHNLMEELGK 208

Query: 218 MIRVLKR-LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           + RV++R +      SVL VLD+  GQNA RQ E+F+ VA  TG+I+ K D TA+GG ++
Sbjct: 209 IYRVIEREVGKERMESVL-VLDSVIGQNAFRQAEVFNEVAPLTGVILAKYDNTAKGGIVL 267

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           PI    ++P+ ++G+GE   DL+ F A++F   + G
Sbjct: 268 PIADKLRLPIRYIGLGEAPEDLKLFNAEEFVEALFG 303


>gi|239982559|ref|ZP_04705083.1| signal recognition particle [Streptomyces albus J1074]
          Length = 393

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 171/300 (57%), Gaps = 5/300 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q++VE L  +  
Sbjct: 95  RLRARLARSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVVPTQELVERLRERVR 154

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLS 132
                  + L  +       L+    P      +    P V++VVGVNG GKTT  GKL+
Sbjct: 155 VLGTRTPQELRTLLREELLKLVATDAPRAVKTDNGLETPAVVMVVGVNGTGKTTTTGKLA 214

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           + +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++A++A K+  A+
Sbjct: 215 RVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAE 274

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATTGQN L Q  +F
Sbjct: 275 HADVVLIDTAGRLHTKAGLMDELGKVKRVVEKQAPL--DEVLLVLDATTGQNGLVQARVF 332

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 333 AEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFDPEAFVDALIG 392


>gi|319951004|ref|ZP_08024874.1| signal recognition particle-docking protein FtsY [Dietzia cinnamea
           P4]
 gi|319435347|gb|EFV90597.1| signal recognition particle-docking protein FtsY [Dietzia cinnamea
           P4]
          Length = 379

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/281 (40%), Positives = 170/281 (60%), Gaps = 17/281 (6%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           D+   EE+ED LI +D+G    Q++V+ L  +   + V   R   +V +L+ + L+    
Sbjct: 107 DEDAWEEIEDTLIMADLGATTTQRVVDRLREEIATRQV---RTEAEVRDLLRQTLIDNLH 163

Query: 102 PFNWDFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           P  +D S R       P V+LVVGVNG GKTT  GKL++ +   G  ++L A DTFR+AA
Sbjct: 164 P-EYDRSLRALPNDGTPAVLLVVGVNGTGKTTTTGKLARVLVADGRAILLGAADTFRAAA 222

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            DQL+ WA+R  A+ V  + G+D A++A++A ++     VD +++DTAGRLH  + LM  
Sbjct: 223 ADQLQTWAERVGAEVVRGKEGADPASVAFDAVRRGVETGVDAVLVDTAGRLHTKAGLMDE 282

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           +GK+ RV+++  P     VL V+DATTGQN L Q  +F  V   TG+++TK+DGTA+GG 
Sbjct: 283 LGKVKRVVEKKTPV--DEVLLVIDATTGQNGLMQARVFKEVVDITGVVLTKLDGTAKGG- 339

Query: 275 LIPIVVTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            I   V H+  +PV  +G+GEG +DL PF  + F   + G 
Sbjct: 340 -IVFQVQHELGVPVKLVGLGEGADDLAPFTPEAFVDALLGT 379


>gi|312880079|ref|ZP_07739879.1| signal recognition particle-docking protein FtsY [Aminomonas
           paucivorans DSM 12260]
 gi|310783370|gb|EFQ23768.1| signal recognition particle-docking protein FtsY [Aminomonas
           paucivorans DSM 12260]
          Length = 314

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/321 (36%), Positives = 176/321 (54%), Gaps = 27/321 (8%)

Query: 14  IRKLTKGF----ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           ++ L KGF         + + G+  + S   + +   E+LE+ L+  D+G+ + + ++E+
Sbjct: 1   MKGLWKGFWDKVKDIRSRWEYGVAGLFSDDPVSEEFFEKLEEHLLAGDVGLELTESLLED 60

Query: 70  LLTKRYAKDVSVQRV----------LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           L  + +AK   V +           + D  + + KM  PLS      F     VIL+VGV
Sbjct: 61  L--RSFAKREKVGKASDLKQHFAQEIKDTLQRVPKMGEPLS------FDGPLGVILLVGV 112

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT   KL+      G  V+LAA DTFR+AAIDQL+IW +RT    +    GSDAA
Sbjct: 113 NGSGKTTTAAKLAASFRKRGETVVLAAADTFRAAAIDQLRIWGERTGTRVIAQSPGSDAA 172

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR-LDPHAPHSVLQVLD 238
           A+ ++A +  ++    V+++DTAGRLH    LM  + K+ RV +R +DP    ++L VLD
Sbjct: 173 AVVFDALQAVKSVGRGVVVVDTAGRLHTKHNLMEELTKIHRVARREVDPSCIETLL-VLD 231

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQN L Q E FHA    TG ++TK D TARGG L+ +     +PV ++G+GE   DL
Sbjct: 232 AVTGQNGLVQAETFHAAFPLTGFVLTKFDHTARGGILLSLASRLALPVRYVGLGEKEEDL 291

Query: 299 EPFVAKDFSAVITGCLDYGEE 319
           + F   D  + + G L   +E
Sbjct: 292 DSF---DVDSFVEGLLSLKQE 309


>gi|325963725|ref|YP_004241631.1| signal recognition particle-docking protein FtsY [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469812|gb|ADX73497.1| signal recognition particle-docking protein FtsY [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 402

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/284 (42%), Positives = 175/284 (61%), Gaps = 12/284 (4%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           +G+  ++SS R+D+ V +E+E+ L+ +D+G     ++V+ L   R    V   R    V 
Sbjct: 118 KGLLALLSSDRIDEDVWDEVEETLLLADLGTEPTMQLVDAL---RERVKVLGTRSPEQVK 174

Query: 90  ELIHKMLMPLSKP-----FNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           EL+ + L+ L  P      N    + +P V++VVGVNGVGKTT +GKL++ +      V+
Sbjct: 175 ELLREELIKLVDPTMDRTLNVQRHADKPAVMMVVGVNGVGKTTTVGKLARVLVAEDKDVL 234

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           L A DTFR+AA +QL  W  R     V S+I G+D A++AYEA K    ++VDV++IDTA
Sbjct: 235 LGAADTFRAAAAEQLATWGQRVGVPTVKSDIDGADPASVAYEAVKAGIDQEVDVVMIDTA 294

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL N   LM  +GK+ RV+++L       VL VLDATTGQN L Q  +F  V   TG++
Sbjct: 295 GRLQNKVGLMDELGKVKRVIEKL--AEVDEVLLVLDATTGQNGLNQARVFSEVVNITGIV 352

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +TK+DGTA+GG ++ I  T  +PV  +G+GEG +DL PF A+ F
Sbjct: 353 LTKLDGTAKGGIVVAIQKTLGVPVKLIGLGEGADDLAPFEAEGF 396


>gi|302348911|ref|YP_003816549.1| Probable signal recognition particle protein [Acidilobus
           saccharovorans 345-15]
 gi|302329323|gb|ADL19518.1| Probable signal recognition particle protein [Acidilobus
           saccharovorans 345-15]
          Length = 304

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 166/297 (55%), Gaps = 18/297 (6%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +R   KGFA++   +KE +     S +  +   EEL   L+ +D+   VA+ IV EL TK
Sbjct: 5   LRSALKGFAAS---IKEAVEKKELSEKDLETPLEELMINLVEADVAYDVAESIVMELRTK 61

Query: 74  ----RYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
               +  + ++V+  + +     ++ L    +  +S+      S  P+VI   GVNGVGK
Sbjct: 62  LIGSKVPRGINVEDYVLNSLKSYIATLFSNGIDLVSEAKRKCSSGLPYVITFFGVNGVGK 121

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT I K++  +  +GL  ++AA DTFR+ A +QL+  A+R    F+    G+D A++AY 
Sbjct: 122 TTTIAKVAYMLKSSGLTPVIAAADTFRAGAQEQLRTHAERLGVAFIGGSYGADPASVAYN 181

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+ ++V  ++IDTAGR+H ++ LM+ + K++RV        P   + V+D+ TG +
Sbjct: 182 AINYAKNRRVCAVLIDTAGRMHVDADLMSELKKIVRVAN------PDLRVLVVDSLTGND 235

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           A+ Q + F+   G   +I+TK+D   +GG  I +  T K PV ++GVG+  +DL PF
Sbjct: 236 AVEQAKSFNENVGIDAIILTKLDADLKGGVAISVAATTKKPVIYVGVGQNYSDLRPF 292


>gi|224531980|ref|ZP_03672612.1| signal recognition particle-docking protein FtsY [Borrelia
           valaisiana VS116]
 gi|224511445|gb|EEF81851.1| signal recognition particle-docking protein FtsY [Borrelia
           valaisiana VS116]
          Length = 281

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 166/279 (59%), Gaps = 9/279 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I ++  S +  + V E LE++L+ SDI   +  +I+ +L TK   K+  +  ++  + 
Sbjct: 5   EKIKNLFKSNQ-QENVIENLEEILLESDINNEIVIEIINKL-TKEKNKNEEI--IIEKLK 60

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A DT
Sbjct: 61  ELLSNYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAI+Q+KI+  +     +    GSD +A+ +++   A+ K  D LIIDTAGRL N  
Sbjct: 118 FRAAAIEQMKIYGKQIGIRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177

Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            L+  + K+  V LK++ + +  +  + V+D+T G+N   Q E+F+      G+I+TK+D
Sbjct: 178 NLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNTNNQAEIFNNAIEIDGIIITKLD 237

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            ++R G LI I    K P+YF   GE + D++ F   ++
Sbjct: 238 SSSRAGTLINISKILKKPIYFTTFGEKLEDIKEFDINEY 276


>gi|225552094|ref|ZP_03773034.1| signal recognition particle-docking protein FtsY [Borrelia sp. SV1]
 gi|225371092|gb|EEH00522.1| signal recognition particle-docking protein FtsY [Borrelia sp. SV1]
          Length = 281

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/274 (33%), Positives = 169/274 (61%), Gaps = 9/274 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I ++  S++  + V E LED+L+ SDI   +  +I+ +L TK   K+ + + ++  + 
Sbjct: 5   EKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKL-TKE--KNENEKTIIGKLK 60

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A DT
Sbjct: 61  ELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ KK D LIIDTAGRL N  
Sbjct: 118 FRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKKHDALIIDTAGRLQNKE 177

Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            L+  + K+  V LK++ + +  +  + V+D+T G+NA  Q E+F+      G+I+TK+D
Sbjct: 178 NLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLD 237

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            +++ G +I I    + P+YF   GE + D++ F
Sbjct: 238 SSSKAGTIINISKILEKPIYFTTFGEKLEDIKEF 271


>gi|323475112|gb|ADX85718.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus REY15A]
 gi|323477843|gb|ADX83081.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus HVE10/4]
          Length = 310

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 165/284 (58%), Gaps = 25/284 (8%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQRVLYD---- 87
           I  + ++D V EEL   L+ SD+   VA+KI+E+L    + K+  +   ++R++ D    
Sbjct: 33  IKEKDIEDFV-EELRYQLLESDVSFEVAEKILEDLKENIIGKKVRRSEDLERIVKDSLKK 91

Query: 88  -VSELIHKMLMPLSKPFN----WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
            ++E+I K     +KP N       S +P++I+  G+NGVGKTT I K +  +   GL  
Sbjct: 92  SITEIITK-----NKPMNVLEEIKKSTKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSC 146

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +++A DTFR+AA +QL+I A       +  + G D A++AY+A + A+++ +DV++IDTA
Sbjct: 147 IISASDTFRAAAQEQLEIHARNLEIPLIKGKYGGDPASVAYDAIRAAKSRGIDVVLIDTA 206

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GR+H ++ L+  + +++ + +      P+  + VLD+  G +AL Q + F    G   +I
Sbjct: 207 GRMHTDTDLVNELKRVVNITR------PNLKILVLDSLGGNDALEQAKYFENNVGFDLVI 260

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +TK+D   +GG ++ +      PV +LGVG+  +DL PF A+ F
Sbjct: 261 LTKVDADVKGGVILSLAYELNKPVGYLGVGQTYDDLIPFNAEWF 304


>gi|256397103|ref|YP_003118667.1| signal recognition particle-docking protein FtsY [Catenulispora
           acidiphila DSM 44928]
 gi|256363329|gb|ACU76826.1| signal recognition particle-docking protein FtsY [Catenulispora
           acidiphila DSM 44928]
          Length = 395

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/292 (40%), Positives = 167/292 (57%), Gaps = 19/292 (6%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L +G+  ++S  +LD+   EE+ED LI +D+GV  A ++V  L   R    V   R + +
Sbjct: 104 LGQGLLKLLSRDKLDEATWEEIEDTLIAADLGVGPATELVGRL---RTNTRVQGSRTVDE 160

Query: 88  VSELIHKMLMPLSKPFNWDFS-------------HRPHVILVVGVNGVGKTTVIGKLSKK 134
              L+ + L+ L  P   D S              RP V +VVGVNG GKTT  GKL++ 
Sbjct: 161 ARALLREELIALIDP-TLDRSLKVAKHPAADGAPERPAVAMVVGVNGTGKTTTTGKLARV 219

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           +   G  V+L A DTFR+AA DQL+ W  R  A  V    G+D A++A+EA K+     V
Sbjct: 220 LVADGYTVVLGAADTFRAAAADQLQTWGQRVGAYTVRGAEGADPASVAFEAVKEGTGMGV 279

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D ++IDTAGRLH  + LM  +GK+ RV ++        VL VLDATTGQN L Q  +F  
Sbjct: 280 DTVLIDTAGRLHTKTGLMDELGKVKRVAEKQ--GTVDEVLLVLDATTGQNGLVQARVFAE 337

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF  + F
Sbjct: 338 VVDVTGIVLTKLDGTAKGGIVVAVQKELGVPVKLVGLGEGPDDLAPFDPEAF 389


>gi|111114898|ref|YP_709516.1| signal recognition particle-docking protein FtsY [Borrelia afzelii
           PKo]
 gi|216263934|ref|ZP_03435928.1| signal recognition particle-docking protein FtsY [Borrelia afzelii
           ACA-1]
 gi|110890172|gb|ABH01340.1| signal recognition particle-docking protein FtsY [Borrelia afzelii
           PKo]
 gi|215979978|gb|EEC20800.1| signal recognition particle-docking protein FtsY [Borrelia afzelii
           ACA-1]
          Length = 281

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 160/261 (61%), Gaps = 8/261 (3%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           + V E LED+L+ SDI   +  +I+ +L TK   K+ + + ++  + EL+   +   +K 
Sbjct: 17  ENVIENLEDILLESDINNEIVIEIINKL-TKE--KNKNEKTIIEKLKELLSDYIN--TKK 71

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A DTFR+AAI+Q+KI+ 
Sbjct: 72  FTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADTFRAAAIEQMKIYG 130

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV- 221
           ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N   L+  + K+  V 
Sbjct: 131 EQIGIRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKENLIKELQKINNVI 190

Query: 222 LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           LK++ + +  +  + V+D+T G+N   Q E+F+      G+I+TK+D ++R G +I I  
Sbjct: 191 LKQMKNTNINYQKILVIDSTIGKNTNSQAEIFNKAIEIDGIIITKLDSSSRAGAIINISK 250

Query: 281 THKIPVYFLGVGEGINDLEPF 301
             K P+YF   GE + D++ F
Sbjct: 251 ILKKPIYFTTFGEKLEDIKEF 271


>gi|238620250|ref|YP_002915076.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus M.16.4]
 gi|238381320|gb|ACR42408.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus M.16.4]
          Length = 310

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 165/284 (58%), Gaps = 25/284 (8%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQRVLYD---- 87
           I  + ++D + EEL   L+ SD+   VA+KI+E+L    + K+  +   ++R++ D    
Sbjct: 33  IKEKDIEDFI-EELRYQLLESDVSFEVAEKILEDLKENIIGKKVRRSEDLERIVKDSLKK 91

Query: 88  -VSELIHKMLMPLSKPFN----WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
            ++E+I K     +KP N       S +P++I+  G+NGVGKTT I K +  +   GL  
Sbjct: 92  SITEIITK-----NKPMNVLEEIKKSTKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSC 146

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +++A DTFR+AA +QL+I A       +  + G D A++AY+A + A+++ +DV++IDTA
Sbjct: 147 IISASDTFRAAAQEQLEIHARNLEIPLIKGKYGGDPASVAYDAIRAAKSRGIDVVLIDTA 206

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GR+H ++ L+  + +++ + +      P+  + VLD+  G +AL Q + F    G   +I
Sbjct: 207 GRMHTDTDLVNELKRVVNITR------PNLKILVLDSLGGNDALEQAKYFENNVGFDLVI 260

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +TK+D   +GG ++ +      PV +LGVG+  +DL PF A+ F
Sbjct: 261 LTKVDADVKGGVILSLAYELNKPVGYLGVGQTYDDLIPFNAEWF 304


>gi|227497502|ref|ZP_03927731.1| signal recognition particle receptor [Actinomyces urogenitalis DSM
           15434]
 gi|226833030|gb|EEH65413.1| signal recognition particle receptor [Actinomyces urogenitalis DSM
           15434]
          Length = 325

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/274 (39%), Positives = 166/274 (60%), Gaps = 17/274 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSELIHKMLMP 98
           EE+ED L+ SD+G+ V   ++E L T+    D S        ++R L  + +      + 
Sbjct: 49  EEIEDTLLTSDLGIEVTTALMETLRTQAKVLDTSDPTAIRGVLRRELLALVDPAMDRSLN 108

Query: 99  LSKP-----FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           L+ P     F  + S     +L+VGVNG GKTT  GKL++ +      V++ A DTFR+A
Sbjct: 109 LAPPQAAEGFTGEGSP-AAAVLMVGVNGTGKTTTCGKLARVLVAQDKTVLMGAADTFRAA 167

Query: 154 AIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           A +QL  W +R   + V SE  G+D A++A++A  QA A+ VDV+++DTAGRL N + LM
Sbjct: 168 AAEQLGTWGERVGVEVVRSEREGADPASVAFDAAYQAAAQGVDVVLVDTAGRLQNKAGLM 227

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +GK+ RV++++ P     +L VLDATTGQN +RQ ++F    G TG+++TK+DGTA+G
Sbjct: 228 DELGKIKRVMEKVAPVG--EILLVLDATTGQNGMRQAQVFSEAVGVTGIVLTKLDGTAKG 285

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G ++ +     +PV  +G+GEG +DL PF  + F
Sbjct: 286 GIVVTVQRELGVPVKLVGLGEGADDLAPFDPEGF 319


>gi|21226912|ref|NP_632834.1| signal recognition particle subunit Ffh/SRP54 [Methanosarcina mazei
           Go1]
 gi|20905220|gb|AAM30506.1| signal recognition particle subunit Ffh/SRP54 [Methanosarcina mazei
           Go1]
          Length = 419

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 144/261 (55%), Gaps = 13/261 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWD 106
           ELE  L+ SD+ V+V++ IVE +  +       +     D V E + K ++ +     +D
Sbjct: 152 ELEMGLLESDLAVSVSEAIVESVKNQLTGTTKRIGSNTGDIVEEALKKAILDVVSANTFD 211

Query: 107 FSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           F        +P  I+ VG+NG GKTT I K++ ++   G  V+LAAGDTFR+ AIDQL I
Sbjct: 212 FDEYVKNRPKPVHIVFVGINGTGKTTSISKMTHRLLKLGYSVVLAAGDTFRAGAIDQLGI 271

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            ADR     +  + G+D AA+ Y+A + A+A  +D ++ DTAGR+H N  LMA + K+ R
Sbjct: 272 HADRLGVKMIKHQAGADPAAVIYDAVQYAKAHNIDFVLSDTAGRMHTNMNLMAQMEKICR 331

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V       +P  ++ V +A  G +A+ +   F+      G I+TK+D  A+GG  I I  
Sbjct: 332 V------SSPDLIIFVDEAVAGNDAVERAAQFNDAVPIDGSILTKIDADAKGGAAISIAY 385

Query: 281 THKIPVYFLGVGEGINDLEPF 301
               P+ F GVG+G  DL+ F
Sbjct: 386 ITGKPILFFGVGQGYEDLKKF 406


>gi|195941815|ref|ZP_03087197.1| cell division protein, putative [Borrelia burgdorferi 80a]
          Length = 281

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/274 (33%), Positives = 167/274 (60%), Gaps = 9/274 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I ++  S++  + V E LED+L+ SDI   +  +I+ +L TK   K+ + + ++  + 
Sbjct: 5   EKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKL-TKE--KNENEKTIIGKLK 60

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A DT
Sbjct: 61  ELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N  
Sbjct: 118 FRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177

Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            L+  + K+  V LK++ +    +  + V+D+T G+NA  Q E+F+      G+I+TK+D
Sbjct: 178 NLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLD 237

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            +++ G +I I    + P+YF   GE I D++ F
Sbjct: 238 SSSKAGTIINISKILEKPIYFTTFGEKIEDIKEF 271


>gi|25028526|ref|NP_738580.1| putative cell division protein FtsY [Corynebacterium efficiens
           YS-314]
 gi|23493811|dbj|BAC18780.1| putative cell division protein FtsY [Corynebacterium efficiens
           YS-314]
          Length = 636

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/305 (37%), Positives = 177/305 (58%), Gaps = 11/305 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           I KL    A +     + +  I+++  LD+   E++E +LI++D+G  V  ++VEEL  K
Sbjct: 337 IGKLRGRLARSQNVFGKSVLGILTAGDLDEDAWEDIEAMLIKADLGATVTMRVVEELRDK 396

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTV 127
                VS +    +   ++   L+   +P          +  +P V+LVVGVNG GKTT 
Sbjct: 397 IATHGVSSE---AEARAMLRATLIDACRPDLDRSIRAMPYEGKPAVVLVVGVNGTGKTTT 453

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL++ +   G +V+L A DTFR+AA DQL+ W  R  A  V    G+D A++A++A  
Sbjct: 454 TGKLARVLVSMGHRVLLGAADTFRAAAADQLETWGRRVGATTVRGAEGADPASVAFDAVA 513

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +   ++ DV++IDTAGRLH ++ LM  +GK+ RV+++  P     VL VLDAT GQN ++
Sbjct: 514 KGVEQQADVVLIDTAGRLHTSTGLMDQLGKVKRVVEKKAPV--DEVLLVLDATVGQNGMQ 571

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F 
Sbjct: 572 QARIFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFV 631

Query: 308 AVITG 312
             + G
Sbjct: 632 DALLG 636


>gi|203287545|ref|YP_002222560.1| signal recognition particle-docking protein [Borrelia recurrentis
           A1]
 gi|201084765|gb|ACH94339.1| signal recognition particle-docking protein [Borrelia recurrentis
           A1]
          Length = 281

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/262 (37%), Positives = 158/262 (60%), Gaps = 8/262 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E LEDLL+ +DI   +  +IVE +  K  AKD   Q  +  +  L+   L    +P N +
Sbjct: 21  ERLEDLLLEADIKNDIVIEIVEHI-QKIKAKDK--QETVLQLKNLLKSYLNQ--QPLNLE 75

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + R +++L++GVNGVGKT+ I KL+ K  + G  V++AA DTFR+AAI+QLKI +++  
Sbjct: 76  -NKRLNILLILGVNGVGKTSSIIKLANKFKNEGKNVLIAAADTFRAAAIEQLKIQSEKIG 134

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR-- 224
              +    GSDAAA+ +++   A+ K  D+LIIDTAGRL N   L+  + KM +V+K+  
Sbjct: 135 IKVISQNQGSDAAAVIFDSISSAKTKNYDILIIDTAGRLQNKENLIKELKKMDQVIKKQI 194

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           LD +  +  + V+D+ +G+N   Q E+F       G+I TK D ++R GG+I I    + 
Sbjct: 195 LDTNINYKKILVIDSISGKNTNNQTEIFDKAIQIDGIIATKFDSSSRAGGIINISKLFQK 254

Query: 285 PVYFLGVGEGINDLEPFVAKDF 306
           P+YF   GE +++++ F  +++
Sbjct: 255 PIYFFTFGEQVDNIKEFNTENY 276


>gi|203284002|ref|YP_002221742.1| signal recognition particle-docking protein FtsY [Borrelia duttonii
           Ly]
 gi|201083445|gb|ACH93036.1| signal recognition particle-docking protein FtsY [Borrelia duttonii
           Ly]
          Length = 281

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/262 (37%), Positives = 158/262 (60%), Gaps = 8/262 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E LEDLL+ +DI   +  +IVE +  K  AKD   Q  +  +  L+   L    +P N +
Sbjct: 21  ERLEDLLLEADIKNDIVIEIVEHI-QKIKAKDE--QETVLQLKNLLKSYLNQ--QPLNLE 75

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + R +++L++GVNGVGKT+ I KL+ K  + G  V++AA DTFR+AAI+QLKI +++  
Sbjct: 76  -NKRLNILLILGVNGVGKTSSIIKLANKFKNEGKNVLIAAADTFRAAAIEQLKIQSEKIG 134

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR-- 224
              +    GSDAAA+ +++   A+ K  D+LIIDTAGRL N   L+  + KM +V+K+  
Sbjct: 135 IKVISQNQGSDAAAVIFDSISSAKTKNYDILIIDTAGRLQNKENLIKELKKMDQVIKKQI 194

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           LD +  +  + V+D+ +G+N   Q E+F       G+I TK D ++R GG+I I    + 
Sbjct: 195 LDTNINYKKILVIDSISGKNTNNQTEIFDKAIQIDGIIATKFDSSSRAGGIINISKLFQK 254

Query: 285 PVYFLGVGEGINDLEPFVAKDF 306
           P+YF   GE +++++ F  +++
Sbjct: 255 PIYFFTFGEQVDNIKEFNTENY 276


>gi|327401640|ref|YP_004342479.1| signal recognition particle-docking protein FtsY [Archaeoglobus
           veneficus SNP6]
 gi|327317148|gb|AEA47764.1| signal recognition particle-docking protein FtsY [Archaeoglobus
           veneficus SNP6]
          Length = 376

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 165/300 (55%), Gaps = 24/300 (8%)

Query: 19  KGFASTSLKLKEGITDIISSRRL--DDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72
           K      + +KE ++ +I  R +  D+G    +  ELE +L+ SD+   V ++I ++L  
Sbjct: 73  KKLVKPRIGIKEKVSALILRREIVIDEGKLDEILPELEIILLESDVAFEVVEEISDKLRQ 132

Query: 73  KRYAKDVSVQRVLYDV--SEL--IHKMLMPLSKPFNWDF-------SHRPHVILVVGVNG 121
           +   +   V   L D+   EL  I K ++  +K F++D          +P  I+ VGVNG
Sbjct: 133 RLVGRTKKVGEKLSDIVLDELRAIIKEILDTNK-FDFDAYIEEALKEKKPLNIIFVGVNG 191

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT I KL+K+++D G  V+LAAGDTFR+ AI+QL+  A+R     +  + G+D AA+
Sbjct: 192 TGKTTTIAKLAKRLTDRGYSVVLAAGDTFRAGAIEQLEEHANRLGVKLIKHKAGADPAAV 251

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A   A++K +DV++ DTAGR+H    L+  + K+ RV K      P   + V ++  
Sbjct: 252 IYDAIAHAESKGIDVVLADTAGRMHTKKNLIDQLEKIKRVTK------PDLTIFVDESIA 305

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G +A+ +  MF+   G  G I+TK+D   +GG  I I      PV F+GVG+  +DL  F
Sbjct: 306 GNDAVERARMFNEAVGIDGSILTKLDADPKGGTAISISYVTGKPVLFIGVGQEYDDLVKF 365


>gi|259507580|ref|ZP_05750480.1| cell division protein FtsY [Corynebacterium efficiens YS-314]
 gi|259164854|gb|EEW49408.1| cell division protein FtsY [Corynebacterium efficiens YS-314]
          Length = 624

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/305 (37%), Positives = 177/305 (58%), Gaps = 11/305 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           I KL    A +     + +  I+++  LD+   E++E +LI++D+G  V  ++VEEL  K
Sbjct: 325 IGKLRGRLARSQNVFGKSVLGILTAGDLDEDAWEDIEAMLIKADLGATVTMRVVEELRDK 384

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTV 127
                VS +    +   ++   L+   +P          +  +P V+LVVGVNG GKTT 
Sbjct: 385 IATHGVSSE---AEARAMLRATLIDACRPDLDRSIRAMPYEGKPAVVLVVGVNGTGKTTT 441

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL++ +   G +V+L A DTFR+AA DQL+ W  R  A  V    G+D A++A++A  
Sbjct: 442 TGKLARVLVSMGHRVLLGAADTFRAAAADQLETWGRRVGATTVRGAEGADPASVAFDAVA 501

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +   ++ DV++IDTAGRLH ++ LM  +GK+ RV+++  P     VL VLDAT GQN ++
Sbjct: 502 KGVEQQADVVLIDTAGRLHTSTGLMDQLGKVKRVVEKKAPV--DEVLLVLDATVGQNGMQ 559

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F 
Sbjct: 560 QARIFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFV 619

Query: 308 AVITG 312
             + G
Sbjct: 620 DALLG 624


>gi|257055013|ref|YP_003132845.1| signal recognition particle-docking protein FtsY [Saccharomonospora
           viridis DSM 43017]
 gi|256584885|gb|ACU96018.1| signal recognition particle-docking protein FtsY [Saccharomonospora
           viridis DSM 43017]
          Length = 516

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/267 (41%), Positives = 165/267 (61%), Gaps = 9/267 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSK---- 101
           E++ED L+ +D+G A   +IVE L T+  A+ V + ++    + E++   L P S     
Sbjct: 246 EDVEDTLLIADLGAATTTEIVETLRTELSARGVRTSEQARALLREVLVNALGPDSDRSVR 305

Query: 102 --PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
             P   D + +P V+LV GVNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+
Sbjct: 306 ALPHTVDGTKQPAVVLVAGVNGTGKTTTTGKLARVLVAQGHDVVLGAADTFRAAAADQLQ 365

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            WA+R  A+ +  + G+D A++A++A K+  +  VD ++IDTAGRLH  + LM  +GK+ 
Sbjct: 366 TWAERVGAEVIRGKEGADPASVAFDAVKRGISSGVDAVLIDTAGRLHTKTGLMDELGKVK 425

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV+++        VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG +  + 
Sbjct: 426 RVVEKQ--AKVDEVLLVLDATTGQNGLAQARVFSEVVDVTGIVLTKLDGTAKGGIVFQVQ 483

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDF 306
               +PV  +G+GEG +DL PF  + F
Sbjct: 484 RELGVPVKLVGLGEGPDDLAPFEPEAF 510


>gi|224534870|ref|ZP_03675439.1| signal recognition particle-docking protein FtsY [Borrelia
           spielmanii A14S]
 gi|224513810|gb|EEF84135.1| signal recognition particle-docking protein FtsY [Borrelia
           spielmanii A14S]
          Length = 281

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 166/274 (60%), Gaps = 9/274 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I ++  S+   + + E LED+L+ SDI   +  +I+ +L TK   K+ + + ++  + 
Sbjct: 5   EKIKNLFKSKE-QENILENLEDILLESDINNEIVIEIINKL-TKE--KNKTEKTIIEKLK 60

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A DT
Sbjct: 61  ELLSDYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N  
Sbjct: 118 FRAAAIEQMKIYGEQIGVKIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177

Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            L+  + K+  V LK++ + +  +  + V+D+T G+N   Q E+F+      G+I+TK+D
Sbjct: 178 NLIKELQKINNVILKQVKNTNINYQKILVIDSTIGKNTNSQAEIFNKSIEIDGIIITKLD 237

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            ++R G +I I    + P+YF   GE + D++ F
Sbjct: 238 SSSRAGTIINISKILEKPIYFTTFGEKLEDIKEF 271


>gi|315090797|gb|EFT62773.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL110PA4]
          Length = 389

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/268 (38%), Positives = 161/268 (60%), Gaps = 11/268 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S       
Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS---AH 161

Query: 88  VSELIHKMLMPLSKP-----FNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
             E++H  L+ L  P      N D    +P V+L+VGVNG GKTT  GKL++ +   G  
Sbjct: 162 AREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKT 221

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +      VDV+++DT
Sbjct: 222 VLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLVDT 281

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   TG+
Sbjct: 282 AGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVTGI 339

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           +++K+DG+A+GG ++ +     +PV  +
Sbjct: 340 VLSKLDGSAKGGIVVQVQRELGVPVKLI 367


>gi|300780915|ref|ZP_07090769.1| signal recognition particle GTPase [Corynebacterium genitalium ATCC
           33030]
 gi|300532622|gb|EFK53683.1| signal recognition particle GTPase [Corynebacterium genitalium ATCC
           33030]
          Length = 559

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 177/307 (57%), Gaps = 13/307 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           I +L    + +   + +G+  I+++  LD+   EE+ED LI +D+G  +  K+ E L  K
Sbjct: 257 IGRLRGRLSRSQNAIGQGLLGILTAGDLDEDAWEEIEDTLIMADLGAELTMKVTENLRAK 316

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTT 126
              + V+ +    +   ++ + L+   +P   D S        +P VILVVGVNG GKTT
Sbjct: 317 IAERGVASEE---EARAMLRETLIEAGRP-ELDRSIKAMPNEGKPAVILVVGVNGTGKTT 372

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL++ +   G +V+L A DTFR+AA DQL+ W  R  A  V    G+D AA+A++A 
Sbjct: 373 TTGKLARVLISMGHRVVLGAADTFRAAAADQLETWGRRVGASTVRGAEGADPAAVAFDAV 432

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K    ++ DV+I+DTAGRLH ++ LM  +GK+ RV+++        VL VLDAT GQN L
Sbjct: 433 KTGVEEQADVVIVDTAGRLHTSTGLMDQLGKVKRVVEKK--SQVDEVLLVLDATVGQNGL 490

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F
Sbjct: 491 TQARVFKDVVEITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGF 550

Query: 307 SAVITGC 313
              + G 
Sbjct: 551 VDALLGT 557


>gi|314923843|gb|EFS87674.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL001PA1]
          Length = 390

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/268 (38%), Positives = 161/268 (60%), Gaps = 11/268 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S       
Sbjct: 105 LARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS---AH 161

Query: 88  VSELIHKMLMPLSKP-----FNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
             E++H  L+ L  P      N D    +P V+L+VGVNG GKTT  GKL++ +   G  
Sbjct: 162 AREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEGKT 221

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +      VDV+++DT
Sbjct: 222 VLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLVDT 281

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   TG+
Sbjct: 282 AGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVTGI 339

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           +++K+DG+A+GG ++ +     +PV  +
Sbjct: 340 VLSKLDGSAKGGIVVQVQRELGVPVKLI 367


>gi|20092902|ref|NP_618977.1| signal recognition particle receptor [Methanosarcina acetivorans
           C2A]
 gi|19918211|gb|AAM07457.1| signal recognition particle receptor [Methanosarcina acetivorans
           C2A]
          Length = 417

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/264 (34%), Positives = 148/264 (56%), Gaps = 19/264 (7%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH----KMLMPLSKPF 103
           ELE  L+ SD+ ++V++ IVE +  +      + +R+  +  E++     K ++ +    
Sbjct: 151 ELEMGLLESDLALSVSEAIVESVKNQLTG---TTKRIGSNTGEIVEAALKKAILEVVSAN 207

Query: 104 NWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            +DF        +P  I+ VG+NG GKTT I K++ ++  +G  V+LAAGDTFR+ AIDQ
Sbjct: 208 TFDFDEYVKNREKPVHIVFVGINGTGKTTSISKITNRLLKSGYSVVLAAGDTFRAGAIDQ 267

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L I A+R     +  + G+D AA+ Y+A + A+A K+D ++ DTAGR+H N  LMA + K
Sbjct: 268 LGIHANRLGVKMIKHQAGADPAAVIYDAVQYAKAHKIDFVLSDTAGRMHTNMNLMAQMEK 327

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RV        P  ++ V +A  G +A+ +   F+      G I+TK+D  A+GG  I 
Sbjct: 328 ICRV------STPDLIIFVDEAVAGNDAVERAAQFNEAVPIDGSILTKIDADAKGGAAIS 381

Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301
           I      P+ F G+G+G  DL+ F
Sbjct: 382 IAYITGKPILFFGIGQGYEDLKKF 405


>gi|313124889|ref|YP_004035153.1| signal recognition particle-docking protein ftsy [Halogeometricum
           borinquense DSM 11551]
 gi|312291254|gb|ADQ65714.1| signal recognition particle-docking protein FtsY [Halogeometricum
           borinquense DSM 11551]
          Length = 446

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/274 (35%), Positives = 152/274 (55%), Gaps = 14/274 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIH 93
           II    L+D + E LE  L+ SD+ + VA++I++ +  K   +    V+ +   V E +H
Sbjct: 166 IIEEEDLEDPLWE-LEMALLESDVEMHVAEEILDTIREKMVGETRRQVETMGQLVQEALH 224

Query: 94  KMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             L  +     +DF  R      P  ++  GVNGVGKTT I K+++     GL V+LA G
Sbjct: 225 DALYDVISVGQFDFDQRIAEADKPVTLIFTGVNGVGKTTSIAKMARYFEKQGLSVVLANG 284

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT+R+ A +Q++  A+      +  E G D AA+ Y+A + A+A  +DV++ DTAGRLH 
Sbjct: 285 DTYRAGANEQIRKHAENLDTKIISHEQGGDPAAVIYDAVEYAEAHDIDVVLGDTAGRLHT 344

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           ++ LMA + K+ RV++      P   L V +A  GQ+A+ + + F+  A   G ++TK D
Sbjct: 345 SNDLMAQLEKIDRVVE------PDLTLFVDEAVAGQDAVERAKQFNEAAEIDGAVLTKAD 398

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             + GG  I I      P+ FLGVG+G +D+E F
Sbjct: 399 ADSNGGAAISIAYVTGKPILFLGVGQGYDDIEQF 432


>gi|229258560|gb|ACQ45585.1| cell division protein FtsY [Vesicomya sp. endosymbiont]
          Length = 194

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 118/191 (61%), Gaps = 5/191 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           ++ L D   L   +   L+K F  D       +   VILVVGVNG GKTT+IGKL+K   
Sbjct: 4   RKTLKDAESLYQFLKDELAKLFIKDNQLNTSINETFVILVVGVNGSGKTTLIGKLAKSFQ 63

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           D G  VMLAAGDTFR+AAI+QL IW    +   V   +G+D A++ ++A++ AQAK +D+
Sbjct: 64  DQGKSVMLAAGDTFRAAAIEQLIIWGRLNNIPVVAQTLGADTASVIFDAYQSAQAKNIDI 123

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           LI DTAGRLH    LM  +GK+ RV+ + + +APH  + V+D  +GQN + Q + F+   
Sbjct: 124 LIADTAGRLHTQKNLMKELGKIKRVITKQNKNAPHETMLVIDGGSGQNVINQAKEFNKSL 183

Query: 257 GTTGLIMTKMD 267
             + + +TK+D
Sbjct: 184 TLSSISITKLD 194


>gi|14520718|ref|NP_126193.1| signal recognition particle receptor [Pyrococcus abyssi GE5]
 gi|5457934|emb|CAB49424.1| GTP-binding signal recognition particle receptor (SRP alpha, SRP54)
           [Pyrococcus abyssi GE5]
          Length = 322

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 143/259 (55%), Gaps = 16/259 (6%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF------SHRPHV 113
           A+ +KI E+L+ K+       ++++ D V E I ++L P   P   D       S +P+V
Sbjct: 69  ALKEKIKEKLVGKKVRIGTDKEKIIEDAVREAILEILTP---PRKIDLLEEIRKSEKPYV 125

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL VG NG GKTT I KL+  +   G  V++AA DTFR+ AI+QL+  A R     +   
Sbjct: 126 ILFVGFNGSGKTTTIAKLAHWLKKNGFSVVIAASDTFRAGAIEQLEEHAKRVGVKVIKHS 185

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G+D AA+AY+A + A+A+ +DV++IDTAGR   N  LM  + K+ RV K      P+ V
Sbjct: 186 YGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMRKIARVTK------PNLV 239

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + V D+  G   + Q   F+       +I+TK+D  ARGG  + I      P+ F+G+G+
Sbjct: 240 VFVGDSLAGNAIVEQARQFNDAVKIDAVILTKLDADARGGAALSISHVTNAPILFVGIGQ 299

Query: 294 GINDLEPFVAKDFSAVITG 312
           G +DL PF  K F   I G
Sbjct: 300 GYDDLMPFDEKWFVERILG 318


>gi|152965360|ref|YP_001361144.1| signal recognition particle-docking protein FtsY [Kineococcus
           radiotolerans SRS30216]
 gi|151359877|gb|ABS02880.1| signal recognition particle-docking protein FtsY [Kineococcus
           radiotolerans SRS30216]
          Length = 391

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 111/271 (40%), Positives = 164/271 (60%), Gaps = 8/271 (2%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMP 98
           LD+   EE+E+ L+ +D+G     +IV+ L  +          +L ++   EL+  +   
Sbjct: 118 LDEATWEEVEETLLLADVGFGPTTEIVDALRERVKVLGTREPALLREMLREELLRAVGTD 177

Query: 99  LSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           + +       + RP VI+VVGVNG GKTT +GKL++ +      V+L A DTFR+AA +Q
Sbjct: 178 VDRTLRTTRHADRPAVIMVVGVNGTGKTTTVGKLARVLVAEDKDVVLGAADTFRAAAAEQ 237

Query: 158 LKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           L  W DR     V S+  G+D A++A++A KQ    +VDV+I+DTAGRL N   LM  +G
Sbjct: 238 LATWGDRVGVPTVRSDKDGADPASVAFDAVKQGIDDEVDVVIVDTAGRLQNKVGLMDELG 297

Query: 217 KMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
           K+ RV++R   H P   VL VLDATTGQN LRQ  +F  V   TG+++TK+DGTA+GG +
Sbjct: 298 KVKRVVER---HGPVDEVLLVLDATTGQNGLRQAAVFSEVVDVTGIVLTKLDGTAKGGIV 354

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + +  +  +PV  +G+GEG +DL PF  + F
Sbjct: 355 VAVQRSLDVPVKLIGLGEGPDDLAPFDPEAF 385


>gi|312148247|gb|ADQ30906.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi JD1]
          Length = 281

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 167/274 (60%), Gaps = 9/274 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I ++  S++  + V E LED+L+ SDI   +  +I+ +L TK   K+ + + ++  + 
Sbjct: 5   EKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKL-TKE--KNENEKTIIGKLK 60

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A DT
Sbjct: 61  ELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N  
Sbjct: 118 FRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177

Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            L+  + K+  V LK++ +    +  + V+D+T G+NA  Q E+F+      G+I+TK+D
Sbjct: 178 NLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLD 237

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            +++ G ++ I    + P+YF   GE I D++ F
Sbjct: 238 SSSKAGTILNISKILEKPIYFTTFGEKIEDIKEF 271


>gi|218249622|ref|YP_002374606.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi ZS7]
 gi|221217460|ref|ZP_03588931.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 72a]
 gi|223889106|ref|ZP_03623695.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 64b]
 gi|224533927|ref|ZP_03674512.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi CA-11.2a]
 gi|225549275|ref|ZP_03770248.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 94a]
 gi|226320752|ref|ZP_03796308.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 29805]
 gi|226322012|ref|ZP_03797537.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi Bol26]
 gi|218164810|gb|ACK74871.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi ZS7]
 gi|221192738|gb|EEE18954.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 72a]
 gi|223885355|gb|EEF56456.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 64b]
 gi|224512930|gb|EEF83296.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi CA-11.2a]
 gi|225370133|gb|EEG99573.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 94a]
 gi|226232602|gb|EEH31356.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi Bol26]
 gi|226233807|gb|EEH32532.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 29805]
          Length = 281

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 167/274 (60%), Gaps = 9/274 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I ++  S++  + V E LED+L+ SDI   +  +I+ +L TK   K+ + + ++  + 
Sbjct: 5   EKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKL-TKE--KNENEKTIIGKLK 60

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A DT
Sbjct: 61  ELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N  
Sbjct: 118 FRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177

Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            L+  + K+  V LK++ +    +  + V+D+T G+NA  Q E+F+      G+I+TK+D
Sbjct: 178 NLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLD 237

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            +++ G +I I    + P+YF   GE + D++ F
Sbjct: 238 SSSKAGTIINISKILEKPIYFTTFGEKLEDIKEF 271


>gi|326330603|ref|ZP_08196908.1| signal recognition particle-docking protein FtsY [Nocardioidaceae
           bacterium Broad-1]
 gi|325951593|gb|EGD43628.1| signal recognition particle-docking protein FtsY [Nocardioidaceae
           bacterium Broad-1]
          Length = 384

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 113/294 (38%), Positives = 171/294 (58%), Gaps = 19/294 (6%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  G+ +++S+ +LD+   E +EDLL+ +DIGVA  Q++VE L T+     + V+    D
Sbjct: 101 LGRGLLNLLSTDQLDEDTWESIEDLLLTADIGVAPTQELVEGLRTR-----LRVEGGKAD 155

Query: 88  VSELIHKMLMPLSKPFNWDFSHR---------PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
               +   L+ L  P       R         P V+L+VGVNG GKTT  GKL++ +   
Sbjct: 156 PKAALRDELIKLVDP---GMDRRLQVSGADGAPGVVLMVGVNGTGKTTTTGKLARILVSE 212

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A DTFR+AA +QL  W +R   + V    G+D A++A+++ K+     VD +I
Sbjct: 213 DRKVVLGAADTFRAAAAEQLTTWGERVGVEVVRGPEGTDPASVAFDSVKEGLDTGVDTVI 272

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL N + LM  +GK+ RV+++  P     VL VLDATTGQN L Q  +F      
Sbjct: 273 VDTAGRLQNKAGLMDELGKVKRVIEKQTPVT--EVLLVLDATTGQNGLIQARVFSEAVAV 330

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           TG+++TK+DG+A+GG ++ +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 331 TGIVLTKLDGSAKGGIVVAVQRELGVPVKLVGLGEGPDDLTPFTPEAFVDALLG 384


>gi|116671040|ref|YP_831973.1| signal recognition particle-docking protein FtsY [Arthrobacter sp.
           FB24]
 gi|116611149|gb|ABK03873.1| signal recognition particle-docking protein FtsY [Arthrobacter sp.
           FB24]
          Length = 404

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 120/287 (41%), Positives = 175/287 (60%), Gaps = 14/287 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L +G+  ++SS ++D+ V +E+E+ L+ +D+G     ++V+ L   R    V   R    
Sbjct: 118 LGKGLLALLSSDKIDEDVWDEVEETLLLADLGTEPTMQLVDAL---RERVKVLGTRTPEQ 174

Query: 88  VSELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           V  L+ + L+ L  P   D S R       P V++VVGVNGVGKTT +GKL++ +     
Sbjct: 175 VKALLREELIKLVDP-TMDRSLRTDRHADKPAVMMVVGVNGVGKTTTVGKLARVLVAEDK 233

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLII 199
            V+L A DTFR+AA +QL  W  R     V S++ G+D A++AYEA K    ++VDV++I
Sbjct: 234 DVLLGAADTFRAAAAEQLATWGQRVGVPTVKSDVDGADPASVAYEAVKSGIDQEVDVVMI 293

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL N   LM  +GK+ RV+++L       VL VLDATTGQN L Q  +F  V   T
Sbjct: 294 DTAGRLQNKVGLMDELGKVKRVIEKL--AEVDEVLLVLDATTGQNGLNQARVFSEVVNIT 351

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G+++TK+DGTA+GG ++ I  T  +PV  +G+GEG +DL PF A+ F
Sbjct: 352 GIVLTKLDGTAKGGIVVAIQKTLGVPVKLIGLGEGADDLAPFDAESF 398


>gi|15610058|ref|NP_217437.1| cell division protein FtsY [Mycobacterium tuberculosis H37Rv]
 gi|15842465|ref|NP_337502.1| signal recognition particle FtsY [Mycobacterium tuberculosis
           CDC1551]
 gi|31794097|ref|NP_856590.1| cell division protein FtsY [Mycobacterium bovis AF2122/97]
 gi|121638802|ref|YP_979026.1| putative cell division protein ftsY [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662765|ref|YP_001284288.1| signal recognition particle FtsY [Mycobacterium tuberculosis H37Ra]
 gi|148824110|ref|YP_001288864.1| cell division protein ftsY [Mycobacterium tuberculosis F11]
 gi|215404896|ref|ZP_03417077.1| cell division protein ftsY [Mycobacterium tuberculosis 02_1987]
 gi|215412763|ref|ZP_03421475.1| cell division protein ftsY [Mycobacterium tuberculosis 94_M4241A]
 gi|215428363|ref|ZP_03426282.1| cell division protein ftsY [Mycobacterium tuberculosis T92]
 gi|224991294|ref|YP_002645983.1| putative cell division protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253797991|ref|YP_003030992.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 1435]
 gi|254233011|ref|ZP_04926338.1| cell division protein ftsY [Mycobacterium tuberculosis C]
 gi|260187940|ref|ZP_05765414.1| cell division protein ftsY [Mycobacterium tuberculosis CPHL_A]
 gi|260202056|ref|ZP_05769547.1| cell division protein ftsY [Mycobacterium tuberculosis T46]
 gi|260206240|ref|ZP_05773731.1| cell division protein ftsY [Mycobacterium tuberculosis K85]
 gi|289444476|ref|ZP_06434220.1| cell division protein ftsY [Mycobacterium tuberculosis T46]
 gi|289448586|ref|ZP_06438330.1| cell division protein ftsY [Mycobacterium tuberculosis CPHL_A]
 gi|289553290|ref|ZP_06442500.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 605]
 gi|289575626|ref|ZP_06455853.1| cell division protein ftsY [Mycobacterium tuberculosis K85]
 gi|289746720|ref|ZP_06506098.1| cell division protein FtsY [Mycobacterium tuberculosis 02_1987]
 gi|289751587|ref|ZP_06510965.1| cell division protein ftsY [Mycobacterium tuberculosis T92]
 gi|294993982|ref|ZP_06799673.1| cell division protein ftsY [Mycobacterium tuberculosis 210]
 gi|297635540|ref|ZP_06953320.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 4207]
 gi|297732539|ref|ZP_06961657.1| cell division protein ftsY [Mycobacterium tuberculosis KZN R506]
 gi|298526390|ref|ZP_07013799.1| cell division protein ftsY [Mycobacterium tuberculosis 94_M4241A]
 gi|306777211|ref|ZP_07415548.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu001]
 gi|306781118|ref|ZP_07419455.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu002]
 gi|306785757|ref|ZP_07424079.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu003]
 gi|306789797|ref|ZP_07428119.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu004]
 gi|306794610|ref|ZP_07432912.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu005]
 gi|306798854|ref|ZP_07437156.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu006]
 gi|306804699|ref|ZP_07441367.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu008]
 gi|306808892|ref|ZP_07445560.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu007]
 gi|306968991|ref|ZP_07481652.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu009]
 gi|306973328|ref|ZP_07485989.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu010]
 gi|307081034|ref|ZP_07490204.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu011]
 gi|307085633|ref|ZP_07494746.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu012]
 gi|313659871|ref|ZP_07816751.1| signal recognition particle-docking protein FtsY [Mycobacterium
           tuberculosis KZN V2475]
 gi|54037143|sp|P66843|FTSY_MYCBO RecName: Full=Cell division protein ftsY homolog
 gi|54041037|sp|P66842|FTSY_MYCTU RecName: Full=Cell division protein ftsY homolog
 gi|1405957|emb|CAA98981.1| PROBABLE CELL DIVISION PROTEIN FTSY (SRP RECEPTOR) (SIGNAL
           RECOGNITION PARTICLE RECEPTOR) [Mycobacterium
           tuberculosis H37Rv]
 gi|13882770|gb|AAK47316.1| signal recognition particle FtsY [Mycobacterium tuberculosis
           CDC1551]
 gi|31619692|emb|CAD96632.1| PROBABLE CELL DIVISION PROTEIN FTSY [Mycobacterium bovis AF2122/97]
 gi|121494450|emb|CAL72931.1| Probable cell division protein ftsY [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124602070|gb|EAY61080.1| cell division protein ftsY [Mycobacterium tuberculosis C]
 gi|148506917|gb|ABQ74726.1| signal recognition particle FtsY [Mycobacterium tuberculosis H37Ra]
 gi|148722637|gb|ABR07262.1| cell division protein ftsY [Mycobacterium tuberculosis F11]
 gi|224774409|dbj|BAH27215.1| putative cell division protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253319494|gb|ACT24097.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 1435]
 gi|289417395|gb|EFD14635.1| cell division protein ftsY [Mycobacterium tuberculosis T46]
 gi|289421544|gb|EFD18745.1| cell division protein ftsY [Mycobacterium tuberculosis CPHL_A]
 gi|289437922|gb|EFD20415.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 605]
 gi|289540057|gb|EFD44635.1| cell division protein ftsY [Mycobacterium tuberculosis K85]
 gi|289687248|gb|EFD54736.1| cell division protein FtsY [Mycobacterium tuberculosis 02_1987]
 gi|289692174|gb|EFD59603.1| cell division protein ftsY [Mycobacterium tuberculosis T92]
 gi|298496184|gb|EFI31478.1| cell division protein ftsY [Mycobacterium tuberculosis 94_M4241A]
 gi|308214420|gb|EFO73819.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu001]
 gi|308326065|gb|EFP14916.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu002]
 gi|308329537|gb|EFP18388.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu003]
 gi|308333730|gb|EFP22581.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu004]
 gi|308337087|gb|EFP25938.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu005]
 gi|308340899|gb|EFP29750.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu006]
 gi|308344736|gb|EFP33587.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu007]
 gi|308348716|gb|EFP37567.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu008]
 gi|308353412|gb|EFP42263.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu009]
 gi|308357231|gb|EFP46082.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu010]
 gi|308361240|gb|EFP50091.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu011]
 gi|308364860|gb|EFP53711.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu012]
 gi|323718532|gb|EGB27703.1| cell division protein ftsY [Mycobacterium tuberculosis CDC1551A]
 gi|326904535|gb|EGE51468.1| cell division protein ftsY [Mycobacterium tuberculosis W-148]
 gi|328457765|gb|AEB03188.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 4207]
          Length = 422

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 106/271 (39%), Positives = 159/271 (58%), Gaps = 9/271 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMPLSKP 102
           +++ED L+ +D+G A    +V +L ++  + +V  +     VL DV  LI+++   + + 
Sbjct: 156 QDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDV--LINELQPGMDRS 213

Query: 103 FN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                 +  P V+LVVGVNG GKTT +GKL++ +   G +V+L A DTFR+AA DQL+ W
Sbjct: 214 IRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTW 273

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A R  A  V    G+D A++A++A  +  A   DV++IDTAGRLH    LM  + K+ RV
Sbjct: 274 AARVGAAVVRGPEGADPASVAFDAVDKGIAAGADVVLIDTAGRLHTKVGLMDELDKVKRV 333

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           + R    +   VL VLDAT GQN L Q  +F  V   +G ++TK+DGTA+GG +  +   
Sbjct: 334 VTRR--ASVDEVLLVLDATIGQNGLAQARVFAEVVDISGAVLTKLDGTAKGGIVFRVQQE 391

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             +PV  +G+GEG +DL PF    F   + G
Sbjct: 392 LGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 422


>gi|18978138|ref|NP_579495.1| signal recognition particle receptor [Pyrococcus furiosus DSM 3638]
 gi|18893939|gb|AAL81890.1| signal recognition particle receptor (dpa) [Pyrococcus furiosus DSM
           3638]
          Length = 322

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 96/271 (35%), Positives = 149/271 (54%), Gaps = 21/271 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQ-KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           D +RE+++  L+   + +   + KI+EE + +  ++ +   R + D+ E I K       
Sbjct: 68  DALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRI-DLIEEIRK------- 119

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                 + +P+VI+ VG NG GKTT I KL+  + + G  V++AA DTFR+ AI+QL+  
Sbjct: 120 ------AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEH 173

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A R     +    G+D AA+AY+A + A+A+ +DV++IDTAGR   N  LM  + K+ RV
Sbjct: 174 AKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARV 233

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            K      P+ V+ V DA  G   + Q   F+      G+I+TK+D  ARGG  + I   
Sbjct: 234 TK------PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYV 287

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              P+ F+GVG+G +DL PF  + F   I G
Sbjct: 288 IDAPILFVGVGQGYDDLRPFEKEWFLERIFG 318


>gi|124486291|ref|YP_001030907.1| signal recognition particle-docking protein FtsY
           [Methanocorpusculum labreanum Z]
 gi|124363832|gb|ABN07640.1| signal recognition particle-docking protein FtsY
           [Methanocorpusculum labreanum Z]
          Length = 337

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 144/263 (54%), Gaps = 18/263 (6%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLT---------KRYAKDVSVQRVLYDVSELIHKMLMP 98
           EL+ +L+ SD+   VA+ I E +           +  A DV    + + + E++ +    
Sbjct: 71  ELQMVLLESDVAYPVAEAITEHMKKELVGTHRKLRESADDVVTNALRHAIEEVLGEGFDL 130

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +S     D   RP  IL  GVNG GKTT + K++  +   GL V++ AGDTFR+ AI+Q+
Sbjct: 131 VSYVRTHD---RPVKILFTGVNGTGKTTSVAKIAHYLQSQGLSVVVGAGDTFRAGAIEQI 187

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++  DR     +  + G+D +A+ Y+  + A+A K DV++ D+AGR HN   LM  + K+
Sbjct: 188 RVHCDRLGIKLIAHQEGADPSAVLYDTVEYAKAHKTDVVLADSAGRFHNRVNLMNQLEKI 247

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RV+K      P  V  V +A  G +A+ + E F     T G+I+TK+D   +GG  I I
Sbjct: 248 KRVMK------PDLVFYVDEAVAGNDAVIRAEEFEKTVSTDGVILTKVDMDPKGGAAISI 301

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
             T   P+ FLGVG+G +D++PF
Sbjct: 302 AYTIGKPLVFLGVGQGYDDMKPF 324


>gi|119960685|ref|YP_948189.1| signal recognition particle-docking protein FtsY [Arthrobacter
           aurescens TC1]
 gi|119947544|gb|ABM06455.1| signal recognition particle-docking protein FtsY [Arthrobacter
           aurescens TC1]
          Length = 401

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 119/287 (41%), Positives = 176/287 (61%), Gaps = 14/287 (4%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L +G+  ++S  ++D+ V +E+E+ L+ +D+G     ++V+ L   R    V   R   D
Sbjct: 115 LGKGLLALLSGDKIDENVWDEVEETLLLADLGTEPTMQLVDAL---RERVKVLGTRSPED 171

Query: 88  VSELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           V  ++ + L+ L  P   D S        RP V+LVVGVNGVGKTT +GKL++ +     
Sbjct: 172 VKAMLREELIKLVDP-GMDRSLNVERKGDRPAVVLVVGVNGVGKTTTVGKLARVLVAEDK 230

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLII 199
            V+L A DTFR+AA +QL  W  R     V S+I G+D A++AYEA K    ++VDV+++
Sbjct: 231 DVLLGAADTFRAAAAEQLATWGQRVGVPTVKSDIDGADPASVAYEAVKAGIDQEVDVVMV 290

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL N + LM  +GK+ RV+++L       VL VLDATTGQN L Q  +F  V   T
Sbjct: 291 DTAGRLQNKTGLMDELGKVKRVIEKL--AEVDEVLLVLDATTGQNGLNQARVFAEVVNIT 348

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G+++TK+DGTA+GG ++ I  +  +PV  +G+GEG +DL PF A+ F
Sbjct: 349 GIVLTKLDGTAKGGIVVAIQKSLGVPVKLIGLGEGPDDLAPFDAESF 395


>gi|212374986|pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
           Recognition Particle Receptor From The Archaeon
           Pyrococcus Furiosus
 gi|212374987|pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
           Recognition Particle Receptor From The Archaeon
           Pyrococcus Furiosus
 gi|212374988|pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
           Recognition Particle Receptor From The Archaeon
           Pyrococcus Furiosus
 gi|213424254|pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
           Recognition Particle Receptor From The Archaeon
           Pyrococcus Furiosus
          Length = 328

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 96/271 (35%), Positives = 149/271 (54%), Gaps = 21/271 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQ-KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           D +RE+++  L+   + +   + KI+EE + +  ++ +   R + D+ E I K       
Sbjct: 74  DALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRI-DLIEEIRK------- 125

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                 + +P+VI+ VG NG GKTT I KL+  + + G  V++AA DTFR+ AI+QL+  
Sbjct: 126 ------AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEH 179

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A R     +    G+D AA+AY+A + A+A+ +DV++IDTAGR   N  LM  + K+ RV
Sbjct: 180 AKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARV 239

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            K      P+ V+ V DA  G   + Q   F+      G+I+TK+D  ARGG  + I   
Sbjct: 240 TK------PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYV 293

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              P+ F+GVG+G +DL PF  + F   I G
Sbjct: 294 IDAPILFVGVGQGYDDLRPFEKEWFLERIFG 324


>gi|297191803|ref|ZP_06909201.1| signal recognition particle [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151075|gb|EFH30947.1| signal recognition particle [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 407

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 177/303 (58%), Gaps = 11/303 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q++VE L  +  
Sbjct: 109 RLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQELVERL--RER 166

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGK 130
            K +  +      + L  ++L+ +   F+           P V++VVGVNG GKTT  GK
Sbjct: 167 VKVLGTRTPEQLRTLLREELLLLVGTEFDRAVKTESGLETPAVVMVVGVNGTGKTTTTGK 226

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ +   G  V+L A DTFR+AA DQL+ W +R  A  V      D A++A+++ K+  
Sbjct: 227 LARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEAGDPASVAFDSVKEGI 286

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQV 249
           A+  DV++IDTAGRLH  + LM  +GK+ RV+++   H P   VL VLDATTGQN L Q 
Sbjct: 287 AEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEVLLVLDATTGQNGLVQA 343

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF  + F   
Sbjct: 344 RVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDA 403

Query: 310 ITG 312
           + G
Sbjct: 404 LIG 406


>gi|172040474|ref|YP_001800188.1| signal recognition particle receptor [Corynebacterium urealyticum
           DSM 7109]
 gi|171851778|emb|CAQ04754.1| signal recognition particle receptor [Corynebacterium urealyticum
           DSM 7109]
          Length = 554

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 176/306 (57%), Gaps = 17/306 (5%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           KL    A +   +  G+  I+S+  LD+   EE+ED L+ +D+G     K+V+ L  +  
Sbjct: 257 KLRGRMAKSQNVIGRGVLGILSAGDLDEDAWEEIEDTLLMADLGADTTMKVVDSLRERIA 316

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIG 129
           ++ V  +        ++ ++L+   KP          +  +P VI+VVGVNG GKTT  G
Sbjct: 317 SQGVESEE---QARAMLREVLIEAGKPELDRSIKAMPYKGKPGVIMVVGVNGTGKTTTTG 373

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KLS+ +   G  V+L A DTFR+AA DQL+ W +R  A  V  + G+D A++A+++  Q 
Sbjct: 374 KLSRVLVGMGKHVVLGAADTFRAAAADQLETWGNRVGARTVRGKEGADPASVAFDSVSQG 433

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK---RLDPHAPHSVLQVLDATTGQNAL 246
             ++ DV+++DTAGRLH +  LM  +GK+ RV++   R+D      VL VLDAT GQN L
Sbjct: 434 MDEQADVVLVDTAGRLHTSVGLMDQLGKVKRVVEKRARVD-----EVLLVLDATVGQNGL 488

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F
Sbjct: 489 MQARVFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESF 548

Query: 307 SAVITG 312
              + G
Sbjct: 549 VDALLG 554


>gi|224533025|ref|ZP_03673631.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi WI91-23]
 gi|224512019|gb|EEF82414.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi WI91-23]
          Length = 281

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 167/274 (60%), Gaps = 9/274 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I ++  S++  + V E LED+L+ SDI   +  +I+ +L TK   K+ + + ++  + 
Sbjct: 5   EKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKL-TKE--KNENEKTIIGKLK 60

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A DT
Sbjct: 61  ELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N  
Sbjct: 118 FRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177

Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            L+  + K+  V LK++ +    +  + V+D+T G+NA  Q E+F+      G+I+TK+D
Sbjct: 178 NLIKELQKINNVILKQIKNSDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLD 237

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            +++ G ++ I    + P+YF   GE + D++ F
Sbjct: 238 SSSKAGTILNISKILEKPIYFTTFGEKLEDIKEF 271


>gi|15594422|ref|NP_212210.1| cell division protein, putative [Borrelia burgdorferi B31]
 gi|2687952|gb|AAC66458.1| cell division protein, putative [Borrelia burgdorferi B31]
          Length = 281

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 167/274 (60%), Gaps = 9/274 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I ++  S++  + V E LED+L+ SDI   +  +I+ +L TK   K+ + + ++  + 
Sbjct: 5   EKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKL-TKE--KNENEKTIIGKLK 60

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A DT
Sbjct: 61  ELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N  
Sbjct: 118 FRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177

Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            L+  + K+  V LK++ +    +  + V+D+T G+NA  Q E+F+      G+I+TK+D
Sbjct: 178 NLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITKLD 237

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            +++ G ++ I    + P+YF   GE + D++ F
Sbjct: 238 SSSKAGTILNISKILEKPIYFTTFGEKLEDIKEF 271


>gi|302554416|ref|ZP_07306758.1| signal recognition particle-docking protein FtsY [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472034|gb|EFL35127.1| signal recognition particle-docking protein FtsY [Streptomyces
           viridochromogenes DSM 40736]
          Length = 411

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 176/304 (57%), Gaps = 13/304 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q++VE L   R 
Sbjct: 113 RLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVERL---RE 169

Query: 76  AKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129
              V   R   ++  L+ + L+ L      +    +   R P +++VVGVNG GKTT  G
Sbjct: 170 RVKVLGTRTPEELRTLLREELVTLVGRDMDRTVKTEPEGRGPGIVMVVGVNGTGKTTTTG 229

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V      D A++A++A K+ 
Sbjct: 230 KLARVLVADGQSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEAGDPASVAFDAVKEG 289

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQ 248
           +    +V++IDTAGRLH  + LM  +GK+ RV+++    AP   VL VLDATTGQN L Q
Sbjct: 290 KETGANVVLIDTAGRLHTKTGLMDELGKVKRVVEK---QAPVDEVLLVLDATTGQNGLVQ 346

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF  + F  
Sbjct: 347 ARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGADDLAPFEPEAFVD 406

Query: 309 VITG 312
            + G
Sbjct: 407 ALIG 410


>gi|312136391|ref|YP_004003728.1| signal recognition particle-docking protein ftsy [Methanothermus
           fervidus DSM 2088]
 gi|311224110|gb|ADP76966.1| signal recognition particle-docking protein FtsY [Methanothermus
           fervidus DSM 2088]
          Length = 321

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 163/306 (53%), Gaps = 26/306 (8%)

Query: 14  IRKLTKGFASTSL---KLKEGITDIISSRRLDDGVREELEDLLIRS-------DIGVAVA 63
           ++K+TK  +   +   K++E  + I S  +      +++ED+L          D+ + VA
Sbjct: 13  VKKITKSVSKKEIEKGKVEENKSGIFSFIKEKTISEDDIEDVLWELQLELLEGDVALEVA 72

Query: 64  QKIVE----ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVIL 115
           +KI E    EL+ K+  +   + +  Y  + L + +L  L    N +       +P VIL
Sbjct: 73  EKITESVKKELVGKKVKRSTDIDK--YTRNALKNAILEILKTDSNVEDLLKIKKKPFVIL 130

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNG GKTT I KL+K   + GL  ++AA DTFR+ AI+Q+    ++     +  + G
Sbjct: 131 FVGVNGTGKTTTIAKLAKYFMEKGLVPVIAAADTFRAGAIEQITKHGEKLGVKVIKHKKG 190

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+AY+A   A++K  DV++IDTAGR+  N  LM  + K+ RV+       P  ++ 
Sbjct: 191 SDPAAVAYDAVNHAKSKNKDVVLIDTAGRMQTNMNLMEEMAKIKRVVN------PDFIIF 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V DA TG +A+ Q +MF    G  G+I+TK D   RGG  I I      P+ FLG+G+  
Sbjct: 245 VGDALTGNDAVEQAKMFDEKIGIDGVILTKADADTRGGAAISISYVIGKPILFLGIGQNY 304

Query: 296 NDLEPF 301
           +DL  F
Sbjct: 305 DDLIEF 310


>gi|216264142|ref|ZP_03436134.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 156a]
 gi|225549704|ref|ZP_03770669.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 118a]
 gi|215980615|gb|EEC21422.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 156a]
 gi|225369664|gb|EEG99112.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 118a]
 gi|312149544|gb|ADQ29615.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi N40]
          Length = 281

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 166/274 (60%), Gaps = 9/274 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I ++  S++  + V E LED+L+ SDI   +  +I+ +L TK   K+ + + ++  + 
Sbjct: 5   EKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKL-TKE--KNENEKTIIGKLK 60

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A DT
Sbjct: 61  ELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N  
Sbjct: 118 FRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQNKE 177

Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            L+  + K+  V LK++ +    +  + V+D+T G+NA  Q E+F+      G I+TK+D
Sbjct: 178 NLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGTIITKLD 237

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            +++ G ++ I    + P+YF   GE I D++ F
Sbjct: 238 SSSKAGTILNISKILEKPIYFTTFGEKIEDIKEF 271


>gi|257387285|ref|YP_003177058.1| signal recognition particle-docking protein FtsY [Halomicrobium
           mukohataei DSM 12286]
 gi|257169592|gb|ACV47351.1| signal recognition particle-docking protein FtsY [Halomicrobium
           mukohataei DSM 12286]
          Length = 367

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/276 (37%), Positives = 148/276 (53%), Gaps = 18/276 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDVSVQRVLYDVSEL 91
           II    L D + ++LE  L+ SD+ + VA +I   VEE L     + +S    L  V + 
Sbjct: 89  IIDEEDLQDHL-DDLELALLSSDVEMGVAGEILSGVEENLVGETRRRLSSTGNL--VRDA 145

Query: 92  IHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           + + L  +     +DF  R      P VI+  GVNGVGKTT I KLS+++   GL  +LA
Sbjct: 146 LRESLYDVISVGQFDFEQRIRAADKPVVIIFTGVNGVGKTTTIAKLSERLEGQGLSTVLA 205

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
            GDT+R+ A +QL+  AD      +  E GSD AA+ Y+A + A+A   DV++ DTAGRL
Sbjct: 206 NGDTYRAGANEQLQKHADNLDRTLISHEQGSDPAAVIYDAVEYAEANDTDVVLGDTAGRL 265

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H +  LMA + K+ RV+       P   + V +A  GQ+A+ +   F   A   G ++TK
Sbjct: 266 HTSDDLMAQLEKIDRVID------PDMTIFVDEAVAGQDAVNRAREFDEAAEIDGAVLTK 319

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            D   +GG  I I      P+ FLG G+G +DLE F
Sbjct: 320 ADADPQGGAAISIAHVTGKPILFLGTGQGYDDLERF 355


>gi|291448070|ref|ZP_06587460.1| signal recognition particle receptor FtsY [Streptomyces roseosporus
           NRRL 15998]
 gi|291351017|gb|EFE77921.1| signal recognition particle receptor FtsY [Streptomyces roseosporus
           NRRL 15998]
          Length = 411

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/315 (39%), Positives = 184/315 (58%), Gaps = 13/315 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 102 EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 161

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDF-----SHRPHVILVVG 118
           ++VE L   R    V   R   ++  L+ + L+ L  P F+ +      +  P V++VVG
Sbjct: 162 ELVERL---RERVRVLGTRTPEELRTLLREELITLLGPDFDREVKTEGGAETPGVVMVVG 218

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D 
Sbjct: 219 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDP 278

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++AY+A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++   H P   VL VL
Sbjct: 279 ASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEVLLVL 335

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +D
Sbjct: 336 DATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDD 395

Query: 298 LEPFVAKDFSAVITG 312
           L PF    F   + G
Sbjct: 396 LAPFEPGAFVDALIG 410


>gi|73668009|ref|YP_304024.1| signal recognition particle-docking protein FtsY [Methanosarcina
           barkeri str. Fusaro]
 gi|72395171|gb|AAZ69444.1| signal recognition particle-docking protein FtsY [Methanosarcina
           barkeri str. Fusaro]
          Length = 422

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/276 (34%), Positives = 154/276 (55%), Gaps = 20/276 (7%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-- 93
           + S+ LD+ + E LE  L+ SD+ ++V++ IVE + T+      + +R+  +  E++   
Sbjct: 140 LDSKDLDEPLWE-LEMGLLESDLALSVSEAIVESVKTQLTG---TTKRIGSNTGEIVEEA 195

Query: 94  --KMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
             K ++ +     +DF        +P  I+ VG+NG GKTT I K++ ++  +   V+LA
Sbjct: 196 LKKAILEVVSANTFDFDEYVRDREKPVHIVFVGINGTGKTTSIAKITHRLLKSDYSVVLA 255

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           AGDTFR+ AIDQL I ADR     +  + G+D AA+ Y+A + A+  K+D ++ DTAGR+
Sbjct: 256 AGDTFRAGAIDQLGIHADRLGVKMIKHQPGADPAAVIYDAVQYAKGHKIDFVLSDTAGRM 315

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H N  LM+ + K+ RV        P  ++ V +A  G +A+ +   F+      G I+TK
Sbjct: 316 HTNLNLMSQMEKICRV------STPDLIIFVDEAVAGNDAVERAAQFNEAVPIDGSILTK 369

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +D  A+GG  I I      P+ F G+G+G  DL+ F
Sbjct: 370 IDADAKGGAAISIAYITGKPILFFGIGQGYEDLKKF 405


>gi|312194947|ref|YP_004015008.1| signal recognition particle-docking protein FtsY [Frankia sp.
           EuI1c]
 gi|311226283|gb|ADP79138.1| signal recognition particle-docking protein FtsY [Frankia sp.
           EuI1c]
          Length = 400

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 168/309 (54%), Gaps = 12/309 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
            +V + S   + +L    A +      G+  ++S   L D   +++E  L+ +D+GV   
Sbjct: 88  HEVPAPSAGRLVRLRARLARSQSSFGRGLLALLSGDDLTDEDWDDVESTLLLADVGVTAT 147

Query: 64  QKIVEEL------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
            ++V  L      L  R   DV  + +L D  EL+ ++     +        RP V+LVV
Sbjct: 148 SELVAALKERTAVLGARSWSDV--RDMLRD--ELLAQIGTTADRSLRTAADGRPGVLLVV 203

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNG GKTT  GK+++ +   G  V+L A DTFR+AA DQL+ W  R  A  V    G D
Sbjct: 204 GVNGTGKTTTCGKIARLLVADGKSVVLGAADTFRAAAADQLETWGGRVGAVTVRGAEGGD 263

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A++A K+  A   D ++IDTAGRLH    LM  + K+ RV+ +  P     V+ VL
Sbjct: 264 PASVAFDAVKRGIADGADAVVIDTAGRLHTKVGLMDELSKIKRVVTKQSPV--DEVILVL 321

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQNAL Q  +F      TG+ +TK+DGTA+GG +I +     +PV  +G+GEG +D
Sbjct: 322 DATTGQNALVQARVFTEAVDITGVALTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDD 381

Query: 298 LEPFVAKDF 306
           L PF  + F
Sbjct: 382 LAPFEPEGF 390


>gi|300871820|ref|YP_003786693.1| signal recognition particle receptor FtsY [Brachyspira pilosicoli
           95/1000]
 gi|300689521|gb|ADK32192.1| signal recognition particle receptor, FtsY [Brachyspira pilosicoli
           95/1000]
          Length = 319

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/268 (33%), Positives = 147/268 (54%), Gaps = 9/268 (3%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-HKMLMPL 99
           ++D     LE++LI +D GV   + I+ +L      +D+  +  + D SE+  H   + +
Sbjct: 53  INDEFFASLENMLITADAGVETTKDIISKL------RDIVEKENIKDSSEVKKHLREILI 106

Query: 100 SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           SK  N        +++ +VGVNGVGKTT I KL+  +     K++LAA DTFR+AAI+QL
Sbjct: 107 SKFINKKIELKEKNILFIVGVNGVGKTTSIAKLANILKQDH-KIILAASDTFRAAAIEQL 165

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + WA+R S   V  +   D A++ + A  +A+A   D++I+DTAGR HN   L+  + KM
Sbjct: 166 EEWANRLSVTIVKGQQAGDPASVLFSALDKAKATNADIVIVDTAGRFHNQDNLVKQLEKM 225

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            ++            + VLDA  G N + Q ++F       G I++K+D +A+GG  I +
Sbjct: 226 KKIATERFSEFNFVPILVLDANVGHNGIEQAKVFTNALNIQGAIVSKLDSSAKGGVAISV 285

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                +P+Y+ G GE + D   F A++F
Sbjct: 286 AHYLSLPIYYGGFGEKVEDFREFNAEEF 313


>gi|239944607|ref|ZP_04696544.1| putative signal recognition particle-docking protein FtsY
           [Streptomyces roseosporus NRRL 15998]
 gi|239991070|ref|ZP_04711734.1| putative signal recognition particle-docking protein FtsY
           [Streptomyces roseosporus NRRL 11379]
          Length = 404

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/315 (39%), Positives = 184/315 (58%), Gaps = 13/315 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 95  EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 154

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDF-----SHRPHVILVVG 118
           ++VE L   R    V   R   ++  L+ + L+ L  P F+ +      +  P V++VVG
Sbjct: 155 ELVERL---RERVRVLGTRTPEELRTLLREELITLLGPDFDREVKTEGGAETPGVVMVVG 211

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D 
Sbjct: 212 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDP 271

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++AY+A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++   H P   VL VL
Sbjct: 272 ASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEVLLVL 328

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +D
Sbjct: 329 DATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDD 388

Query: 298 LEPFVAKDFSAVITG 312
           L PF    F   + G
Sbjct: 389 LAPFEPGAFVDALIG 403


>gi|305663810|ref|YP_003860098.1| signal recognition particle-docking protein FtsY [Ignisphaera
           aggregans DSM 17230]
 gi|304378379|gb|ADM28218.1| signal recognition particle-docking protein FtsY [Ignisphaera
           aggregans DSM 17230]
          Length = 306

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 172/307 (56%), Gaps = 32/307 (10%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           QK+ +   +++++++      +L  K+       SR  D+ + E     LI SD+   VA
Sbjct: 3   QKIRNAVQNFVKQISDAIRYKTLDEKD------ISRYCDNLLNE-----LIESDVAYDVA 51

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDF-------SHRP 111
           +KIV ++  +   +++ + R   +V E I+ +++      L    ++DF       S +P
Sbjct: 52  EKIVTDIGNR--LREIKIPRGT-NVEEYINNIVIDVLRKLLDNATSYDFIEYIAKSSEKP 108

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
             I+ +G+NGVGKTT I K++  +  AG+K ++ A DTFR+ A +QLK  ++R    F+ 
Sbjct: 109 VKIVFMGINGVGKTTTIAKVAYMLKKAGVKPVIVAADTFRAGAQEQLKKHSERLGIPFIG 168

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            + G+D AA+A++    A   + DV++IDTAGR+H +  LM  + K+I+V+K      PH
Sbjct: 169 GKYGADPAAVAFDGIVFASKNRFDVVLIDTAGRMHIDVDLMNELKKVIKVVK------PH 222

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             + VLDA TG +A+ Q + F    G  G+I+TK+D  A GG  + +V      ++++GV
Sbjct: 223 IKVLVLDALTGNDAIEQAKKFDEAIGIDGVILTKLDADASGGAAVSVVAGLGKKIFYVGV 282

Query: 292 GEGINDL 298
           G+G +DL
Sbjct: 283 GQGYDDL 289


>gi|51598337|ref|YP_072525.1| signal recognition particle-docking protein FtsY [Borrelia garinii
           PBi]
 gi|51572908|gb|AAU06933.1| signal recognition particle-docking protein FtsY [Borrelia garinii
           PBi]
          Length = 281

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 166/274 (60%), Gaps = 9/274 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I ++  S++  + + E LED+L+ SDI   +  +I+ +L TK   K+ + + ++  + 
Sbjct: 5   EKIKNLFKSKQ-QENIIENLEDILLESDINNEIVIEIINKL-TKE--KNKNEKTIIEKLK 60

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+   +    K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A DT
Sbjct: 61  ELLSNYINI--KKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAADT 117

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AAI+Q+K++ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N  
Sbjct: 118 FRAAAIEQMKVYGEQIGIRIISQNQGSDPSAVIFDSISSAKIKNYDALIIDTAGRLQNKE 177

Query: 210 ILMAGIGKMIRV-LKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            L+  + K+  V LK++ + +  +  + V+D+T G+N   Q E+F+      G+I+TK+D
Sbjct: 178 NLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNTNSQAEIFNKAIEIDGIIITKLD 237

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            ++R G +I I    + P+YF   GE + D++ F
Sbjct: 238 SSSRAGVIINISKILEKPIYFTTFGETLEDIKEF 271


>gi|325971171|ref|YP_004247362.1| signal recognition particle-docking protein FtsY [Spirochaeta sp.
           Buddy]
 gi|324026409|gb|ADY13168.1| signal recognition particle-docking protein FtsY [Spirochaeta sp.
           Buddy]
          Length = 291

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 163/298 (54%), Gaps = 12/298 (4%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           + KGF +   KLK     +      D+   E LED LI  D+G  +A  I  E+     +
Sbjct: 1   MLKGFGA---KLKA----LFGMNTFDENYFEMLEDFLIEGDLGAKLAMDITSEVRKLAKS 53

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKM 135
           +    Q+   D+  L+ ++L    + F+ +   +   V L++GVNGVGKTT I KL+K  
Sbjct: 54  EKTKTQK---DLQLLVKRLLADKIRTFDENLDPKSLTVFLILGVNGVGKTTSIAKLAKYY 110

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
            + G +V+LAA DTFR+AAIDQL++ A R     V  + GSD  ++ ++A   AQAK  +
Sbjct: 111 QNQGKQVLLAAADTFRAAAIDQLEVHAQRLGCRIVKQKSGSDPGSVVFDAITSAQAKGEN 170

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLK-RLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           ++++DTAGR+HN   L+  + K+ +++K R      +    V+D+TTGQN + Q E+F+ 
Sbjct: 171 LILVDTAGRMHNKENLLRELSKIDKIVKGRGIDDVHYKKFLVIDSTTGQNGISQAELFNQ 230

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                 LI+TK D  A+GG L+ I     IP+ F+G GE   D+  F   +F   + G
Sbjct: 231 AVKLDALILTKYDSLAKGGALVQIGEKQDIPIAFVGTGETYKDIHLFDKDEFLDTLVG 288


>gi|326776316|ref|ZP_08235581.1| signal recognition particle-docking protein FtsY [Streptomyces cf.
           griseus XylebKG-1]
 gi|326656649|gb|EGE41495.1| signal recognition particle-docking protein FtsY [Streptomyces cf.
           griseus XylebKG-1]
          Length = 403

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/315 (39%), Positives = 184/315 (58%), Gaps = 13/315 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 94  EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 153

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDF-----SHRPHVILVVG 118
           ++VE L   R    V   R   ++  L+ + L+ L  P F+ +      +  P V++VVG
Sbjct: 154 ELVERL---RERVRVLGTRTPEELRTLLREELITLLGPDFDREVKTEGGAETPGVVMVVG 210

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D 
Sbjct: 211 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDP 270

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++AY+A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++   H P   +L VL
Sbjct: 271 ASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEILLVL 327

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +D
Sbjct: 328 DATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADD 387

Query: 298 LEPFVAKDFSAVITG 312
           L PF    F   + G
Sbjct: 388 LAPFEPGAFVDALIG 402


>gi|282162678|ref|YP_003355063.1| putative signal recognition particle receptor [Methanocella
           paludicola SANAE]
 gi|282154992|dbj|BAI60080.1| putative signal recognition particle receptor [Methanocella
           paludicola SANAE]
          Length = 347

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/279 (35%), Positives = 157/279 (56%), Gaps = 24/279 (8%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ-----RVLYDVS 89
           I+S + L+ G   ELE  L+ SD+ + VA+ I++     R  KD+S Q     R   D++
Sbjct: 69  ILSEKDLE-GPLWELEMALLESDVALPVAESIID-----RIRKDLSGQHKKFLRSTGDIA 122

Query: 90  E-LIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           E  +   ++ +      DF        +P +++  GVNG GKTT I KL++++ ++ + V
Sbjct: 123 EDALRDAILTILSAHTLDFDDYVKGHDKPVIVVFTGVNGTGKTTTIAKLAERLKESNVGV 182

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ++AAGDTFR+ AI+QL+  ADR     +  + GSD AA+ Y+A   A++ K DV++ DTA
Sbjct: 183 VIAAGDTFRAGAIEQLQKHADRLGVKMIKHDQGSDPAAVIYDAVAYAKSNKKDVVLADTA 242

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH N  LM  + K+ R+++      P  V+ V +A  G +A+ + ++F+     +G I
Sbjct: 243 GRLHTNVNLMEQLKKISRIIR------PDLVIFVDEAIAGNDAVERAKLFNDAVPISGSI 296

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +TK D  ++GG  I I      P+ FLGVG+   DL  F
Sbjct: 297 LTKADADSKGGAAISIAHITGKPILFLGVGQEYKDLRKF 335


>gi|260578974|ref|ZP_05846877.1| signal recognition particle FtsY [Corynebacterium jeikeium ATCC
           43734]
 gi|258602948|gb|EEW16222.1| signal recognition particle FtsY [Corynebacterium jeikeium ATCC
           43734]
          Length = 479

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/289 (38%), Positives = 169/289 (58%), Gaps = 13/289 (4%)

Query: 31  GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           G+  I+S+  LD+   EE+ED L+ +D+G     K+V++L  +     VS +    +   
Sbjct: 197 GVLGILSAGDLDEDAWEEIEDTLLMADLGTPTTMKVVDDLRERIAVNGVSSE---AEARG 253

Query: 91  LIHKMLMPLSKPFNWD-------FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           ++ + L+   KP + D       +  +P VI+VVGVNG GKTT  GKLS+ +   G KV+
Sbjct: 254 MLREALIDACKP-DMDRSIKAMPYEGKPAVIMVVGVNGTGKTTTTGKLSRVLIGMGHKVL 312

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L A DTFR+AA DQL+ W  R  A+ V    G+D A++A++A  +     VDV+++DTAG
Sbjct: 313 LGAADTFRAAAADQLETWGRRVGAETVRGAEGADPASVAFDAVAKGIDSGVDVVLVDTAG 372

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RLH +  LM  +GK+ RV+++        VL VLDAT GQN L Q   F  V   +G+++
Sbjct: 373 RLHTSVGLMDQLGKVKRVVEK--KAKVDEVLLVLDATVGQNGLMQARTFREVVDISGVVL 430

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 431 TKLDGTAKGGIVFQVQEELGVPVKMVGLGEGADDLAPFEVESFVDALLG 479


>gi|182435691|ref|YP_001823410.1| putative signal recognition particle-docking protein FtsY
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178464207|dbj|BAG18727.1| putative signal recognition particle-docking protein FtsY
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 402

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/315 (39%), Positives = 184/315 (58%), Gaps = 13/315 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 93  EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 152

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDF-----SHRPHVILVVG 118
           ++VE L   R    V   R   ++  L+ + L+ L  P F+ +      +  P V++VVG
Sbjct: 153 ELVERL---RERVRVLGTRTPEELRTLLREELITLLGPDFDREVKTEGGAETPGVVMVVG 209

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D 
Sbjct: 210 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDP 269

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++AY+A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++   H P   +L VL
Sbjct: 270 ASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEILLVL 326

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +D
Sbjct: 327 DATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADD 386

Query: 298 LEPFVAKDFSAVITG 312
           L PF    F   + G
Sbjct: 387 LAPFEPGAFVDALIG 401


>gi|226305925|ref|YP_002765885.1| signal recognition particle receptor [Rhodococcus erythropolis PR4]
 gi|226185042|dbj|BAH33146.1| signal recognition particle receptor [Rhodococcus erythropolis PR4]
          Length = 487

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/275 (42%), Positives = 167/275 (60%), Gaps = 17/275 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           EE+ED L+ +D+G A  +K+V +L  +  A+ V   R       L+ ++L+   +P   D
Sbjct: 221 EEVEDTLLIADLGSATTEKVVTKLREQMAARSV---RTEAAARALLREVLIAELRP-ELD 276

Query: 107 FSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            S R       P V+LVVGVNG GKTT  GKL++ +   G +V+L A DTFR+AA DQL+
Sbjct: 277 RSIRALPHDDHPAVLLVVGVNGTGKTTTTGKLARVLVADGRRVVLGAADTFRAAAADQLQ 336

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            WA+R  A+ V  + G D AA+A++A  +  A  VDV++IDTAGRLH  + LM  +GK+ 
Sbjct: 337 TWAERVGAEVVRGKEGGDPAAIAFDAVSRGIADGVDVVLIDTAGRLHTKTGLMDELGKVK 396

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV+++    +   VL VLDAT GQN L Q  +F  V   TG+++TK+DGTA+GG  I   
Sbjct: 397 RVIEK--KASVDDVLLVLDATVGQNGLAQARVFAEVVDITGVVLTKLDGTAKGG--IVFQ 452

Query: 280 VTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           V H+  +PV  +G+GEG +DL PF    F   + G
Sbjct: 453 VQHELGVPVKLVGLGEGADDLAPFEPGAFVDALLG 487


>gi|311898546|dbj|BAJ30954.1| putative signal recognition particle receptor [Kitasatospora setae
           KM-6054]
          Length = 416

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/284 (42%), Positives = 170/284 (59%), Gaps = 15/284 (5%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
           S  RLD+   EE+E+ L+ +D+GV   Q++V+ L T+     V   R   ++  L+ + L
Sbjct: 140 SRDRLDEDTWEEIEETLLTADVGVGATQELVDNLRTRVK---VLGTRTPDELRGLLREEL 196

Query: 97  MPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           + L      D + R       P V+LVVGVNGVGKTT  GKL++ +   G KV+L A DT
Sbjct: 197 VKLIG-TEADRTVRSVKHGDGPAVVLVVGVNGVGKTTTTGKLARVLVADGRKVVLGAADT 255

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AA DQL+ W +R  A  V    G D A++A++A KQ  A  VD +++DTAGRLH  +
Sbjct: 256 FRAAAADQLQTWGERVGAHTVRGPEGGDPASVAFDAVKQGIADGVDTVLVDTAGRLHTKT 315

Query: 210 ILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
            LM  +GK+ RV+++   H P   VL VLDATTGQN L Q  +F  V   TG+++TK+DG
Sbjct: 316 GLMDELGKVKRVVEK---HGPVDEVLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDG 372

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           TA+GG +I +     +PV  +G+GEG +DL PF    F   + G
Sbjct: 373 TAKGGIVISVQRELGVPVKLIGLGEGADDLAPFEPGAFVDALLG 416


>gi|229816785|ref|ZP_04447067.1| hypothetical protein BIFANG_02032 [Bifidobacterium angulatum DSM
           20098]
 gi|229785801|gb|EEP21915.1| hypothetical protein BIFANG_02032 [Bifidobacterium angulatum DSM
           20098]
          Length = 420

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 181/302 (59%), Gaps = 11/302 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S +++L    + +     + + +I++  +L +   E++ED L+ +D+G   ++++VEEL 
Sbjct: 117 SRMQRLKARLSKSGNPFGKALFNILAKDQLSESDWEDVEDTLLLADVGAEASEQLVEELR 176

Query: 72  TKR----YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKT 125
                   +    V+  L D  +L+  +   + +  N D   ++RP VI++VGVNG GKT
Sbjct: 177 NDARIAGQSDPAEVRAALRD--KLLDVVGRDMDRRLNADKEGANRPSVIIMVGVNGTGKT 234

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYE 184
           T  GKL++     G KVML A DTFR+AA DQL+ W  +     V S+  G+D A++A+E
Sbjct: 235 TTTGKLARLFVADGKKVMLGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPASVAFE 294

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A  +A+ +  DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDATTGQN
Sbjct: 295 ASAKAKEENADVLIIDTAGRLQNKANLMDELGKIRRVTEKNLPV--DEVLLVLDATTGQN 352

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            + Q ++F    G TG++++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF  +
Sbjct: 353 GMAQAKVFAEAIGITGVVLSKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFDPE 412

Query: 305 DF 306
            F
Sbjct: 413 GF 414


>gi|300783827|ref|YP_003764118.1| cell division protein FtsY [Amycolatopsis mediterranei U32]
 gi|299793341|gb|ADJ43716.1| cell division protein FtsY [Amycolatopsis mediterranei U32]
          Length = 429

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/275 (41%), Positives = 166/275 (60%), Gaps = 13/275 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSVQR-VLYDV-----SELIHKMLM 97
           +++ED L+ +D+G A   +IVE L   L++R  +  +  R VL++V     S   H+ + 
Sbjct: 159 QDVEDTLLMADLGAATTNQIVERLRDELSRRAVRSSAEAREVLHEVLTAQLSTDGHRAVR 218

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            L  P   D   +P V+LV GVNG GKTT  GKL++ +   G  V+L A DTFR+AA DQ
Sbjct: 219 AL--PHTVDGKKQPAVVLVAGVNGTGKTTTTGKLARVLVAQGGTVLLGAADTFRAAAADQ 276

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+ WA+R  A+ V  + G+D AA+A++A K+     VD +++DTAGRLH  + LM  +GK
Sbjct: 277 LQTWAERVGAEVVRGKEGADPAAVAFDAVKRGVDTGVDAVLVDTAGRLHTKTGLMDELGK 336

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RV+++        VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG +  
Sbjct: 337 VKRVVEKQ--AKVDEVLLVLDATTGQNGLMQARVFAEVIDVTGIVLTKLDGTAKGGIVFQ 394

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     +PV  +G+GEG +DL PF    F   + G
Sbjct: 395 VQKELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 429


>gi|229491381|ref|ZP_04385205.1| cell division protein FtsY [Rhodococcus erythropolis SK121]
 gi|229321666|gb|EEN87463.1| cell division protein FtsY [Rhodococcus erythropolis SK121]
          Length = 479

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/275 (42%), Positives = 167/275 (60%), Gaps = 17/275 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           EE+ED L+ +D+G A  +K+V +L  +  A+ V   R       L+ ++L+   +P   D
Sbjct: 213 EEVEDTLLIADLGSATTEKVVTKLREQMAARSV---RTEAAARALLREVLIAELRP-ELD 268

Query: 107 FSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            S R       P V+LVVGVNG GKTT  GKL++ +   G +V+L A DTFR+AA DQL+
Sbjct: 269 RSIRALPHDDHPAVLLVVGVNGTGKTTTTGKLARVLVADGRRVVLGAADTFRAAAADQLQ 328

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            WA+R  A+ V  + G D AA+A++A  +  A  VDV++IDTAGRLH  + LM  +GK+ 
Sbjct: 329 TWAERVGAEVVRGKEGGDPAAIAFDAVSRGIADGVDVVLIDTAGRLHTKTGLMDELGKVK 388

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV+++    +   VL VLDAT GQN L Q  +F  V   TG+++TK+DGTA+GG  I   
Sbjct: 389 RVIEK--KASVDDVLLVLDATVGQNGLAQARVFAEVVDITGVVLTKLDGTAKGG--IVFQ 444

Query: 280 VTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           V H+  +PV  +G+GEG +DL PF    F   + G
Sbjct: 445 VQHELGVPVKLVGLGEGADDLAPFEPGAFVDALLG 479


>gi|167969549|ref|ZP_02551826.1| cell division protein ftsY [Mycobacterium tuberculosis H37Ra]
          Length = 422

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/271 (38%), Positives = 159/271 (58%), Gaps = 9/271 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMPLSKP 102
           +++ED L+ +D+G A    +V +L ++  + +V  +     VL DV  LI+++   + + 
Sbjct: 156 QDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDV--LINELQPGMDRS 213

Query: 103 FN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                 +  P V+LVVGV+G GKTT +GKL++ +   G +V+L A DTFR+AA DQL+ W
Sbjct: 214 IRALPHAGHPSVLLVVGVHGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTW 273

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A R  A  V    G+D A++A++A  +  A   DV++IDTAGRLH    LM  + K+ RV
Sbjct: 274 AARVGAAVVRGPEGADPASVAFDAVDKGIAAGADVVLIDTAGRLHTKVGLMDELDKVKRV 333

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           + R    +   VL VLDAT GQN L Q  +F  V   +G ++TK+DGTA+GG +  +   
Sbjct: 334 VTRR--ASVDEVLLVLDATIGQNGLAQARVFAEVVDISGAVLTKLDGTAKGGIVFRVQQE 391

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             +PV  +G+GEG +DL PF    F   + G
Sbjct: 392 LGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 422


>gi|68536275|ref|YP_250980.1| signal recognition particle receptor [Corynebacterium jeikeium
           K411]
 gi|68263874|emb|CAI37362.1| signal recognition particle receptor [Corynebacterium jeikeium
           K411]
          Length = 493

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/289 (38%), Positives = 169/289 (58%), Gaps = 13/289 (4%)

Query: 31  GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           G+  I+S+  LD+   EE+ED L+ +D+G     K+V++L  +     VS +    +   
Sbjct: 211 GVLGILSAGDLDEDAWEEIEDTLLMADLGTPTTMKVVDDLRERIAINGVSSEE---EARG 267

Query: 91  LIHKMLMPLSKPFNWD-------FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           ++ + L+   KP + D       +  +P VI+VVGVNG GKTT  GKLS+ +   G KV+
Sbjct: 268 MLREALIDACKP-DMDRSIKAMPYEGKPAVIMVVGVNGTGKTTTTGKLSRVLIGMGHKVL 326

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L A DTFR+AA DQL+ W  R  A+ V    G+D A++A++A  +     VDV+++DTAG
Sbjct: 327 LGAADTFRAAAADQLETWGRRVGAETVRGAEGADPASVAFDAVAKGIDAGVDVVLVDTAG 386

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RLH +  LM  +GK+ RV+++        VL VLDAT GQN L Q   F  V   +G+++
Sbjct: 387 RLHTSVGLMDQLGKVKRVVEK--KAKVDEVLLVLDATVGQNGLMQARTFREVVDISGVVL 444

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 445 TKLDGTAKGGIVFQVQEELGVPVKMVGLGEGADDLAPFEVESFVDALLG 493


>gi|302865875|ref|YP_003834512.1| signal recognition particle-docking protein FtsY [Micromonospora
           aurantiaca ATCC 27029]
 gi|315502420|ref|YP_004081307.1| signal recognition particle-docking protein ftsy [Micromonospora
           sp. L5]
 gi|302568734|gb|ADL44936.1| signal recognition particle-docking protein FtsY [Micromonospora
           aurantiaca ATCC 27029]
 gi|315409039|gb|ADU07156.1| signal recognition particle-docking protein FtsY [Micromonospora
           sp. L5]
          Length = 396

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/291 (38%), Positives = 165/291 (56%), Gaps = 13/291 (4%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           +G+  ++S  RLD+   EE+ED LI +D+G+   ++IV+ L   R    V   R   ++ 
Sbjct: 105 KGLLGLLSRDRLDEDTWEEIEDSLITADVGIDATREIVDRL---RERTRVLGTRTGEELR 161

Query: 90  ELIHKMLMPLSKP-FNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
            L+   L+    P  +      P      V+LVVGVNG GKTT  GK+++ +   G  V+
Sbjct: 162 ALLAAELVNALDPGLDRSLRTAPKEGVPAVVLVVGVNGAGKTTTCGKIARVLVADGRSVL 221

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L A DTFR+AA DQL+ W  R  A+ V     +D A++A++A K+     VD ++IDTAG
Sbjct: 222 LGAADTFRAAAADQLETWGGRVGAETVRGPEAADPASVAFDAVKRGIDTGVDTVLIDTAG 281

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           RL N   LM  +GK+ RV+++   H P    L +LDATTGQN L Q  +F      TG++
Sbjct: 282 RLQNKIGLMDELGKVKRVVEK---HGPIDETLLILDATTGQNGLEQARVFTEAVNVTGVV 338

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +TK+DGTA+GG +I +     IPV  +G+GEG +DL PF    F   + G 
Sbjct: 339 LTKLDGTAKGGIVIAVQRKLGIPVKLVGLGEGKDDLAPFDPAQFVDALLGT 389


>gi|297559202|ref|YP_003678176.1| signal recognition particle-docking protein FtsY [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843650|gb|ADH65670.1| signal recognition particle-docking protein FtsY [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 394

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/266 (42%), Positives = 160/266 (60%), Gaps = 11/266 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-HKMLMPLSKPFNW 105
           EE+ED LI +DIGVA A +IVE L T+     V   R   +V  L+  ++L  ++   + 
Sbjct: 126 EEIEDTLITADIGVASAAQIVENLRTR---VKVLGTRGTEEVRTLLREELLAQITTGADR 182

Query: 106 DFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                PH     V++VVGVNG GKTT  GKL++ +   G  V+L A DTFR+AA +QL+ 
Sbjct: 183 AVRTGPHDGRPGVVMVVGVNGTGKTTTTGKLARVLVGDGRSVVLGAADTFRAAATEQLET 242

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           W  R  A  V  E G+D A++A++A  +   +  D +IIDTAGRLH  + LM  +GK+ R
Sbjct: 243 WGSRVGAPVVRKEEGADPASVAFDAVARGVEEGADTVIIDTAGRLHTKTGLMDELGKVKR 302

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V+++        VL VLDATTGQN LRQ  +F  V   TG+ +TK+DGTA+GG ++ +  
Sbjct: 303 VVEKK--SQVDEVLLVLDATTGQNGLRQARVFGEVVNVTGIALTKLDGTAKGGIIVQVQR 360

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDF 306
              +PV  +G+GEG +DL PF  + F
Sbjct: 361 ELGVPVKLVGLGEGPDDLAPFDPEVF 386


>gi|312140444|ref|YP_004007780.1| signal recognition particle protein [Rhodococcus equi 103S]
 gi|325675941|ref|ZP_08155624.1| cell division protein FtsY [Rhodococcus equi ATCC 33707]
 gi|311889783|emb|CBH49100.1| signal recognition particle protein [Rhodococcus equi 103S]
 gi|325553179|gb|EGD22858.1| cell division protein FtsY [Rhodococcus equi ATCC 33707]
          Length = 497

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 116/275 (42%), Positives = 166/275 (60%), Gaps = 17/275 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           EE+ED L+ +D+G A   K+VE L  +  ++ V   R   +   L+ ++L+   +P   D
Sbjct: 231 EEVEDTLLIADLGTATTVKVVERLREEMASRGV---RTEAEARALLREVLVEELRP-EMD 286

Query: 107 FSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            S R       P V+LVVGVNG GKTT  GKL++ +   G +V+L A DTFR+AA DQL+
Sbjct: 287 RSIRALPHGDHPAVLLVVGVNGTGKTTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQ 346

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            WA+R  A+ V    G D AA+A+++  +     VDV++IDTAGRLH  + LM  +GK+ 
Sbjct: 347 TWAERVGAEVVRGPEGGDPAAIAFDSVAKGIEDGVDVVLIDTAGRLHTKTGLMDELGKVK 406

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV+++    A   VL VLDAT GQN L Q  +F  V   TG+++TK+DGTA+GG  I   
Sbjct: 407 RVVEK--KAAVDDVLLVLDATVGQNGLMQARVFAEVVDITGVVLTKLDGTAKGG--IVFQ 462

Query: 280 VTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           V H+  +PV  +G+GEG +DL PF  + F   + G
Sbjct: 463 VQHELGVPVKLVGLGEGADDLAPFEPEAFVDALLG 497


>gi|42527548|ref|NP_972646.1| signal recognition particle-docking protein FtsY [Treponema
           denticola ATCC 35405]
 gi|41818133|gb|AAS12557.1| signal recognition particle-docking protein FtsY [Treponema
           denticola ATCC 35405]
 gi|325474494|gb|EGC77681.1| signal recognition particle-docking protein FtsY [Treponema
           denticola F0402]
          Length = 292

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 145/265 (54%), Gaps = 11/265 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           E+L D LI  DIG   A +I   + EL  K   K VS      DV   ++ +L+P  K  
Sbjct: 26  EDLTDTLIEGDIGAKTALEIEASLRELCKKE--KLVSED----DVLNGLYNILLPYVKVT 79

Query: 104 NW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIW 161
           +      +  + LV+GVNGVGKTT IGK++    +  G  ++LAAGDTFR+AAI+QLK  
Sbjct: 80  SLIPEKDKVSIYLVLGVNGVGKTTSIGKMAHYYKEKYGTPIILAAGDTFRAAAIEQLKFH 139

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            ++     V  + G D  A+ ++A     +    +++ DTAGRLHN   L+  + K+ R+
Sbjct: 140 GEKNDVRVVAHQHGGDPGAVIFDAGDAMASSGGGLVLADTAGRLHNKDNLVRELQKIDRI 199

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            K       +  + VLDATTGQN LRQ E+FH   G   + +TK D TA+GG  +     
Sbjct: 200 AKTKASEGCYKKILVLDATTGQNGLRQAEVFHEAIGVDAVFLTKYDSTAKGGVAVTAGKE 259

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDF 306
             +P+ F+G GE   ++ PF A+++
Sbjct: 260 LNLPMLFVGTGEKYENISPFSAENY 284


>gi|292654298|ref|YP_003534195.1| signal recognition particle receptor SRalpha [Haloferax volcanii
           DS2]
 gi|33518607|gb|AAO73354.1| signal recognition particle receptor-like protein [Haloferax
           volcanii]
 gi|291372798|gb|ADE05025.1| signal recognition particle receptor SRalpha [Haloferax volcanii
           DS2]
          Length = 456

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/276 (35%), Positives = 147/276 (53%), Gaps = 18/276 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSEL 91
           +I    L+D + E LE  L++SD+ + VA++I+E   E L     K V     L  VSE 
Sbjct: 176 VIEEEDLEDPLWE-LEMALLQSDVEMQVAEEILETIREKLIGETRKQVESTGQL--VSEA 232

Query: 92  IHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           +H  L  +     +DF  R      P  ++  G+NGVGKTT I KL+K     G   +LA
Sbjct: 233 LHDALYEVISVGQFDFDQRIAEADKPVTLIFTGINGVGKTTTIAKLAKYFEKQGYSTVLA 292

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
            GDT+R+ A +Q++  A+      +  E G D AA+ Y+  + A+A  +D+++ DTAGRL
Sbjct: 293 NGDTYRAGANEQIREHAEALDKKLIAHEQGGDPAAVIYDGVEYAEAHDIDIVLGDTAGRL 352

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H ++ LMA + K+ RV+       P   L V +A  GQ+A+ +   F+  A   G I+TK
Sbjct: 353 HTSNDLMAQLEKIDRVV------GPDLTLFVDEAVAGQDAVERARQFNDAAAIDGAILTK 406

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            D  + GG  I I      P+ FLGVG+G + +E F
Sbjct: 407 ADADSNGGAAISIAYVTGKPILFLGVGQGYDHIEKF 442


>gi|294631634|ref|ZP_06710194.1| signal recognition particle FtsY [Streptomyces sp. e14]
 gi|292834967|gb|EFF93316.1| signal recognition particle FtsY [Streptomyces sp. e14]
          Length = 410

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 116/322 (36%), Positives = 180/322 (55%), Gaps = 27/322 (8%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q
Sbjct: 101 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEETWEEIEDTLLTADVGVQPTQ 160

Query: 65  KIVEELLTK-------------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           ++VE L  +                ++  +  V  DV   +       ++P       +P
Sbjct: 161 ELVERLRERVRVLGTRTPAELRTLLREELLTLVGTDVDRTVR------TEPDG----RKP 210

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            +++VVGVNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V 
Sbjct: 211 GIVMVVGVNGTGKTTTTGKLARVLVADGRTVVLGAADTFRAAAADQLQTWGERVGAHTVR 270

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP- 230
                D A++A++A K+ +   VDV++IDTAGRLH  + LM  +GK+ RV+++   HAP 
Sbjct: 271 GPEAGDPASVAFDAVKEGKEMGVDVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HAPL 327

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             VL VLDATTGQN L Q  +F  V   +G+++TK+DGTA+GG +I +     +PV  +G
Sbjct: 328 DEVLLVLDATTGQNGLVQARVFAEVVDISGIVLTKLDGTAKGGIVIAVQRELGVPVKLIG 387

Query: 291 VGEGINDLEPFVAKDFSAVITG 312
           +GEG +DL PF  + F   + G
Sbjct: 388 LGEGADDLAPFEPEAFVDALIG 409


>gi|284161352|ref|YP_003399975.1| signal recognition particle-docking protein FtsY [Archaeoglobus
           profundus DSM 5631]
 gi|284011349|gb|ADB57302.1| signal recognition particle-docking protein FtsY [Archaeoglobus
           profundus DSM 5631]
          Length = 367

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/290 (34%), Positives = 158/290 (54%), Gaps = 22/290 (7%)

Query: 28  LKEGITDIISSRRL---DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           LK+ I  ++  R +   +  V E LEDL   L+ SD+ + V ++I  +L  +   +   +
Sbjct: 71  LKDKIVALVKDREVVIDEKSVEEILEDLEIILLESDVALEVVEEISRQLKDRLVGRRRKI 130

Query: 82  QRVLYDV--SELIHKMLMPLSKP-FNWDF-------SHRPHVILVVGVNGVGKTTVIGKL 131
              + D+  +EL   +L  L +  F++D          RP  I+ VGVNG GKTT I K+
Sbjct: 131 GEKISDIVINELKLIILDILDRNRFDFDEFVESKLKEKRPLNIVFVGVNGTGKTTTIAKV 190

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K++ D G  V+LAAGDTFR+ AI+QL+    R     +  + G+D  A+ Y+A K A++
Sbjct: 191 AKRLIDFGYSVVLAAGDTFRAGAIEQLEEHGKRLGVKVIKHKQGADPCAVIYDALKHAES 250

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D+++ DTAGR+H    L+  + K+ RV K      P  V+ V ++  G +A+ +  M
Sbjct: 251 KGIDIVLADTAGRMHTKKNLIDQLAKIKRVTK------PDLVIFVDESIAGNDAVERARM 304

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           F+   G  G I+TK+D   +GG  I I      P+ FLG G+G +DL  F
Sbjct: 305 FNEAVGIDGTILTKIDADPKGGTAISISYVTGKPILFLGTGQGYDDLVKF 354


>gi|296139324|ref|YP_003646567.1| signal recognition particle-docking protein FtsY [Tsukamurella
           paurometabola DSM 20162]
 gi|296027458|gb|ADG78228.1| signal recognition particle-docking protein FtsY [Tsukamurella
           paurometabola DSM 20162]
          Length = 479

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 114/274 (41%), Positives = 165/274 (60%), Gaps = 15/274 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNW 105
           EE+ED L+ +D+G     K+VEEL  +     V+      +   L+ K+L+  + P ++ 
Sbjct: 213 EEIEDTLLMADLGTPTTLKVVEELREQVATHGVANA---AEARALLRKVLIAEAHPEYDR 269

Query: 106 DFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                PH     V+LVVGVNG GKTT  GKL++ +   G +V+L A DTFR+AA DQL+ 
Sbjct: 270 SIKALPHAGAPSVLLVVGVNGTGKTTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQT 329

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           WA+R  AD V  + G+D AA+A++A  +   + VDV++IDTAGRLH  + LM  + K+ R
Sbjct: 330 WAERVGADVVRGKEGADPAAVAFDAVAKGTEEGVDVVLIDTAGRLHTKTGLMDELDKVKR 389

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V+++        VL VLDAT GQN L Q ++F  V   TG+++TK+DGTA+GG  I   V
Sbjct: 390 VVEK--KAKVDEVLLVLDATIGQNGLSQAKVFAEVVDITGVVLTKLDGTAKGG--IVYAV 445

Query: 281 THK--IPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            H+  +PV  +G+GEG +DL PF    F   + G
Sbjct: 446 QHELGVPVKLVGLGEGADDLAPFEPGAFVDALLG 479


>gi|19553263|ref|NP_601265.1| signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
          Length = 582

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/282 (38%), Positives = 169/282 (59%), Gaps = 7/282 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ---RVLYDVSEL 91
           I+S+  LD+   E++E +LI++D+G  +  ++V+EL  K     V  +   R +   S L
Sbjct: 304 ILSAGDLDEDAWEDIEAMLIKADLGAKITARVVDELRDKIAEHGVGSEAEARAMLRAS-L 362

Query: 92  IHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           I      L +      +  +P V+LVVGVNG GKTT  GKL++ +   G KV+L A DTF
Sbjct: 363 IDACRPDLDRSIKAMPYEGKPAVVLVVGVNGTGKTTTTGKLARVLVSMGHKVILGAADTF 422

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA DQL+ W  R  A+ V    G+D A++A++A  +   ++ DV+++DTAGRLH ++ 
Sbjct: 423 RAAAADQLETWGRRVGAETVRGAEGADPASIAFDAVAKGVERQADVVLVDTAGRLHTSTG 482

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +GK+ RV+++        VL VLDAT GQN ++Q  +F  V   TG+++TK+DGTA
Sbjct: 483 LMDQLGKVKRVVEKK--AVVDEVLLVLDATVGQNGMQQARIFREVVDITGVVLTKLDGTA 540

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 541 KGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 582


>gi|62390899|ref|YP_226301.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
 gi|41326238|emb|CAF20400.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
          Length = 576

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/282 (38%), Positives = 169/282 (59%), Gaps = 7/282 (2%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ---RVLYDVSEL 91
           I+S+  LD+   E++E +LI++D+G  +  ++V+EL  K     V  +   R +   S L
Sbjct: 298 ILSAGDLDEDAWEDIEAMLIKADLGAKITARVVDELRDKIAEHGVGSEAEARAMLRAS-L 356

Query: 92  IHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           I      L +      +  +P V+LVVGVNG GKTT  GKL++ +   G KV+L A DTF
Sbjct: 357 IDACRPDLDRSIKAMPYEGKPAVVLVVGVNGTGKTTTTGKLARVLVSMGHKVILGAADTF 416

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA DQL+ W  R  A+ V    G+D A++A++A  +   ++ DV+++DTAGRLH ++ 
Sbjct: 417 RAAAADQLETWGRRVGAETVRGAEGADPASIAFDAVAKGVERQADVVLVDTAGRLHTSTG 476

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +GK+ RV+++        VL VLDAT GQN ++Q  +F  V   TG+++TK+DGTA
Sbjct: 477 LMDQLGKVKRVVEKK--AVVDEVLLVLDATVGQNGMQQARIFREVVDITGVVLTKLDGTA 534

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 535 KGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 576


>gi|21324832|dbj|BAB99455.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
          Length = 510

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 110/285 (38%), Positives = 171/285 (60%), Gaps = 13/285 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ---RVLYDVSEL 91
           I+S+  LD+   E++E +LI++D+G  +  ++V+EL  K     V  +   R +   S L
Sbjct: 232 ILSAGDLDEDAWEDIEAMLIKADLGAKITARVVDELRDKIAEHGVGSEAEARAMLRAS-L 290

Query: 92  IHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           I      L +      +  +P V+LVVGVNG GKTT  GKL++ +   G KV+L A DTF
Sbjct: 291 IDACRPDLDRSIKAMPYEGKPAVVLVVGVNGTGKTTTTGKLARVLVSMGHKVILGAADTF 350

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA DQL+ W  R  A+ V    G+D A++A++A  +   ++ DV+++DTAGRLH ++ 
Sbjct: 351 RAAAADQLETWGRRVGAETVRGAEGADPASIAFDAVAKGVERQADVVLVDTAGRLHTSTG 410

Query: 211 LMAGIGKMIRVLKR---LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           LM  +GK+ RV+++   +D      VL VLDAT GQN ++Q  +F  V   TG+++TK+D
Sbjct: 411 LMDQLGKVKRVVEKKAVVD-----EVLLVLDATVGQNGMQQARIFREVVDITGVVLTKLD 465

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           GTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 466 GTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 510


>gi|300933892|ref|ZP_07149148.1| signal recognition particle receptor [Corynebacterium resistens DSM
           45100]
          Length = 483

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 112/288 (38%), Positives = 166/288 (57%), Gaps = 11/288 (3%)

Query: 31  GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           G+  I+S+  LD+   EE+ED L+ +D+G      +VE+L  +     VS +    +   
Sbjct: 201 GVLGILSAGDLDEDAWEEIEDTLLMADLGTKTTLAVVEDLRERIAINGVSSE---AEARA 257

Query: 91  LIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           ++   L+   KP          +  +P VI+VVGVNG GKTT  GKLS+ +     KV+L
Sbjct: 258 MLRAALIDACKPELDRSIKAMPYDGKPAVIMVVGVNGTGKTTTTGKLSRVLVGMDHKVLL 317

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            A DTFR+AA DQL+ W  R  A+ V  + G+D A++A++A  +     VDV++IDTAGR
Sbjct: 318 GAADTFRAAAADQLETWGRRVGAETVRGKEGADPASVAFDAVAKGTEDGVDVVVIDTAGR 377

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LH +  LM  +GK+ RV+++        VL VLDAT GQN L Q  +F  V   TG+++T
Sbjct: 378 LHTSVGLMDQLGKVKRVVEKK--AKVDEVLLVLDATVGQNGLMQARVFREVVDITGVVLT 435

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           K+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 436 KLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESFVDALLG 483


>gi|254172639|ref|ZP_04879314.1| signal recognition particle-docking protein FtsY [Thermococcus sp.
           AM4]
 gi|214033568|gb|EEB74395.1| signal recognition particle-docking protein FtsY [Thermococcus sp.
           AM4]
          Length = 328

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 159/286 (55%), Gaps = 24/286 (8%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV----QRVLYD-VSELI 92
            R LDD     LE  L+ +D+ + V  ++ E +  K   + V +     +++ D V E +
Sbjct: 53  ERALDD-----LEIELLEADVALEVVDELRESIKRKLVGRKVKIGTDKAKIIEDAVKEAV 107

Query: 93  HKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            ++L P  K    +       +P+VI+ VG NG GKTT I KL+  +   GL V++AA D
Sbjct: 108 LEVLTPPRKINLLEEIRAKKEKPYVIVFVGFNGSGKTTTIAKLAHWLKKNGLSVVIAASD 167

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+ AI+Q++  A R     +    G+D AA+AY+A + A+A+ +DV+++DTAGR   N
Sbjct: 168 TFRAGAIEQVEEHAKRVGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLVDTAGRNELN 227

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  + K++RV K      P  V+ V D+  G + + Q   F+      G+I+TK+D 
Sbjct: 228 RNLMDEMKKIVRVTK------PDLVIFVGDSLAGNSIIDQARQFNEAVRIDGVILTKLDA 281

Query: 269 TARGGGLIPIVVTHKI--PVYFLGVGEGINDLEPFVAKDFSAVITG 312
            +RGG  + I  +H I  P+ F+GVG+G +DL+PF  K F  +I G
Sbjct: 282 DSRGGAALSI--SHAIGAPILFVGVGQGYDDLKPFDEKWFVNLIFG 325


>gi|282861362|ref|ZP_06270427.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           ACTE]
 gi|282564020|gb|EFB69557.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           ACTE]
          Length = 401

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 124/315 (39%), Positives = 184/315 (58%), Gaps = 13/315 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 92  EVPEPTAGRLVRLRARLARSQNSLGKGLLALLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 151

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDF-----SHRPHVILVVG 118
           ++VE L   R    V   R   ++  L+ + L+ L  P F+ +      +  P V++VVG
Sbjct: 152 ELVERL---RERVRVLGTRTPEELRALLREELVALLGPDFDREVKTEGGAETPGVVMVVG 208

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D 
Sbjct: 209 VNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDP 268

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++A++A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++   H P   VL VL
Sbjct: 269 ASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEVLLVL 325

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +D
Sbjct: 326 DATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDD 385

Query: 298 LEPFVAKDFSAVITG 312
           L PF    F   + G
Sbjct: 386 LAPFEPGAFVDALIG 400


>gi|302525136|ref|ZP_07277478.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           AA4]
 gi|302434031|gb|EFL05847.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           AA4]
          Length = 447

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 110/279 (39%), Positives = 163/279 (58%), Gaps = 21/279 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------- 99
           +++ED L+ +D+G A   +IV+ L  +   + V   R   +  EL+H++L          
Sbjct: 177 QDVEDTLLMADLGAATTTQIVDRLRDELNRRAV---RTSAEARELLHEVLTAALSTDAER 233

Query: 100 ---SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              + P   D    P V+LV GVNG GKTT  GKL++ +   G  V+L A DTFR+AA D
Sbjct: 234 AVRALPHEVDGKKEPAVVLVAGVNGTGKTTTTGKLARVLVAQGGTVVLGAADTFRAAAAD 293

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL+ W +R  A  +  + G+D AA+A++A KQ  ++ VD +++DTAGRLH  + LM  +G
Sbjct: 294 QLQTWGERVGASVIRGKEGADPAAVAFDAVKQGISEGVDTVLVDTAGRLHTKTGLMDELG 353

Query: 217 KMIRVLK---RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
           K+ RV++   R+D      VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG
Sbjct: 354 KVKRVVEKQARVD-----EVLLVLDATTGQNGLAQARVFAEVIDVTGIVLTKLDGTAKGG 408

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            +  +     +PV  +G+GEG +DL PF    F   + G
Sbjct: 409 IVFQVQKELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 447


>gi|118431321|ref|NP_147702.2| signal recognition particle protein [Aeropyrum pernix K1]
 gi|116062644|dbj|BAA80066.2| probable signal recognition particle protein [Aeropyrum pernix K1]
          Length = 308

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 163/300 (54%), Gaps = 20/300 (6%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLI---RSDIGVAVAQKIV---- 67
           +L +     S  +  GI D ++ + L  + +   L+D+LI    SD+ +  A+ IV    
Sbjct: 4   RLREALNRASEHIARGIVDTLAYKELKPEDLEPVLDDILIDLVESDVALEAAESIVAGVK 63

Query: 68  EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKP-----FNWDFSHRPHVILVVGVNG 121
           E L   R  +   V++V+ D + + +  +L P  +P            RP VIL +GVNG
Sbjct: 64  EGLTGYRVRRGEPVEKVVRDALRKALLTLLDPGPRPDLAAEARRRCGGRPLVILFLGVNG 123

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT I K++  +  AG+  ++AA DTFR+ A +QL + A++     V    G D A++
Sbjct: 124 TGKTTTIAKVAYMLRKAGVTPVIAAADTFRAGAQEQLAVHAEKLGVPIVRGRYGGDPASV 183

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A K A+++    +++DTAGR+H +S L+  + K++RV+K      P   + V+D+ T
Sbjct: 184 AYDAVKHAESRGFCAVLVDTAGRMHVDSNLVEELRKIVRVVK------PDYKILVVDSLT 237

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G +A+ Q  +F    G  G+I+TK+D   +GG L+ +    + P+ ++G G+   DL PF
Sbjct: 238 GNDAVEQARLFDEAVGVDGVIVTKVDADPKGGTLVSVAHAIRKPILYIGTGQRYEDLRPF 297


>gi|311739745|ref|ZP_07713580.1| cell division protein FtsY [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305561|gb|EFQ81629.1| cell division protein FtsY [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 660

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/293 (38%), Positives = 173/293 (59%), Gaps = 19/293 (6%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           +G+  I+S+  LD+   EE+ED LI +D+G     K+ + L  K   + VS +    +  
Sbjct: 375 QGLMGILSAGDLDEDAWEEVEDTLIMADLGTKSTMKVTDSLREKIAERGVSSE---DEAR 431

Query: 90  ELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
            ++ + L+    P   D S        +P +++VVGVNG GKTT  GKL++ +   G KV
Sbjct: 432 AMLRECLIEAGHP-EMDRSIKAMPNEGKPAIVMVVGVNGTGKTTTTGKLARVLVSMGHKV 490

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA DQL+ W  R  AD V  + G+D A++A++A      ++VDV+++DTA
Sbjct: 491 LLGAADTFRAAAADQLETWGRRVGADTVRGKEGADPASVAFDAVATGVEQQVDVVLVDTA 550

Query: 203 GRLHNNSILMAGIGKMIRVLKR---LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           GRLH ++ LM  +GK+ RV+++   +D      VL VLDAT GQN L Q  +F  V   T
Sbjct: 551 GRLHTSTDLMDQLGKVKRVVEKKTDVD-----EVLLVLDATVGQNGLTQARIFREVVDIT 605

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 606 GVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 658


>gi|255325270|ref|ZP_05366376.1| signal recognition particle GTPase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297835|gb|EET77146.1| signal recognition particle GTPase [Corynebacterium
           tuberculostearicum SK141]
          Length = 659

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/291 (39%), Positives = 172/291 (59%), Gaps = 15/291 (5%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           +G+  I+S+  LD+   EE+ED LI +D+G     K+ + L  K   + VS +    +  
Sbjct: 374 QGLMGILSAGDLDEDAWEEVEDTLIMADLGTKSTMKVTDSLREKIAERGVSSE---DEAR 430

Query: 90  ELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
            ++ + L+    P   D S        +P +++VVGVNG GKTT  GKL++ +   G KV
Sbjct: 431 AMLRECLIEAGHP-EMDRSIKAMPNEGKPAIVMVVGVNGTGKTTTTGKLARVLVAMGHKV 489

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA DQL+ W  R  AD V  + G+D A++A++A      ++VDV+++DTA
Sbjct: 490 LLGAADTFRAAAADQLETWGRRVGADTVRGKEGADPASVAFDAVATGVEQQVDVVLVDTA 549

Query: 203 GRLHNNSILMAGIGKMIRVL-KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           GRLH ++ LM  +GK+ RV+ K+ D      VL VLDAT GQN L Q  +F  V   TG+
Sbjct: 550 GRLHTSTDLMDQLGKVKRVVEKKTD---VDEVLLVLDATVGQNGLTQARIFREVVDITGV 606

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           ++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 607 VLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 657


>gi|222479253|ref|YP_002565490.1| signal recognition particle-docking protein FtsY [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222452155|gb|ACM56420.1| signal recognition particle-docking protein FtsY [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 371

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 144/263 (54%), Gaps = 17/263 (6%)

Query: 48  ELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           +LE  L+ SD+ ++VA++I   V E +     K V     L  V   +H  L+ +     
Sbjct: 104 DLEMALLESDVEMSVAERILDTVREKMLGESRKQVETTGEL--VESALHDALLDVIAVGQ 161

Query: 105 WDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +DF  R      P  I+  GVNGVGKTT I KLS+ ++D G   ++A GDT+R+ A +Q+
Sbjct: 162 FDFEERIAEADKPVTIVFTGVNGVGKTTSIAKLSEWLADRGYSSVMANGDTYRAGANEQI 221

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +  ADR   + +  + G D AA+ Y+  + A+A  +DV++ DTAGRLH +  LMA + K+
Sbjct: 222 QEHADRLDRELISHDQGGDPAAVIYDGVEYAEANDIDVVLGDTAGRLHTSDDLMAQLEKI 281

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RV+      AP   L V +A  GQ+A+ + + F+  A   G ++TK D  + GG  I +
Sbjct: 282 DRVV------APDMTLFVDEAVAGQDAVNRAKEFNDAAEIDGAVLTKADADSSGGAAISV 335

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
                 P+ FLG G+G +DL  F
Sbjct: 336 AYVTGKPILFLGTGQGYDDLTLF 358


>gi|300858750|ref|YP_003783733.1| signal recognition particle receptor [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686204|gb|ADK29126.1| signal recognition particle receptor [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206457|gb|ADL10799.1| Cell division protein ftsY-like protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302331013|gb|ADL21207.1| Signal recognition particle GTPase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276699|gb|ADO26598.1| Signal recognition particle GTPase [Corynebacterium
           pseudotuberculosis I19]
          Length = 548

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/284 (38%), Positives = 168/284 (59%), Gaps = 11/284 (3%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           ++S+  LD+   E++E  LI++D+GVA+  K+V++L      + V+ +    +   ++ +
Sbjct: 270 MLSAGELDEDAWEDIEAQLIQADLGVAITTKVVDDLREMIAERGVASE---AEARAMLKE 326

Query: 95  MLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            L+   KP          +  +P V+LVVGVNG GKTT  GKL++ +   G  V+L A D
Sbjct: 327 CLIRACKPELDRSIKAIPYEGKPAVVLVVGVNGTGKTTTTGKLARVLVAMGHSVVLGAAD 386

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+AA DQL+ W  R  A  +    G+D A++A++A  +      DV+++DTAGRLHN+
Sbjct: 387 TFRAAAADQLETWGRRVGARTIRGAEGADPASVAFDAVAEGVKIGADVVLVDTAGRLHNS 446

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           S LM  +GK+ RV+++        VL VLDATTGQN L Q   F  V   TG+++TK+DG
Sbjct: 447 SNLMDQLGKVKRVVEK--KAVVDEVLLVLDATTGQNGLTQARTFREVVNITGVVLTKLDG 504

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           TA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 505 TAKGGIVFQVQEDLGVPVKLVGLGEGADDLAPFEVEGFVDALLG 548


>gi|262202014|ref|YP_003273222.1| signal recognition particle-docking protein FtsY [Gordonia
           bronchialis DSM 43247]
 gi|262085361|gb|ACY21329.1| signal recognition particle-docking protein FtsY [Gordonia
           bronchialis DSM 43247]
          Length = 531

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/277 (40%), Positives = 166/277 (59%), Gaps = 9/277 (3%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIG----VAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           ++ +  LD+   EE+ED L+ +D+G     AV +++ EEL T         + +L  V  
Sbjct: 254 LLGAGDLDEDSWEEIEDTLVMADLGSSTTAAVVERLREELATNNVRTAEQARALLKRV-- 311

Query: 91  LIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           L+ ++   L +       + RP V+LVVGVNG GKTT  GKL++ +   G +V+L A DT
Sbjct: 312 LVEQLRPELDRSVKALPHAGRPAVVLVVGVNGTGKTTTTGKLARVLVADGRRVLLGAADT 371

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AA DQL+ W +R  A+ V  +  +D AA+A++A  +     VDV++IDTAGRLH  +
Sbjct: 372 FRAAAADQLQTWGERVGAEVVRGKEKADPAAVAFDAVDRGIDAGVDVVMIDTAGRLHTKT 431

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  +GK+ RV+++  P     VL VLDAT GQN L Q  +F  V   TGL++TK+DGT
Sbjct: 432 GLMDELGKVKRVVEKKAPV--DEVLLVLDATVGQNGLMQARVFAEVVDITGLVLTKLDGT 489

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A+GG +  +     +PV  +G+GEG +DL PF  + F
Sbjct: 490 AKGGIVFHVQKELGVPVKLVGLGEGADDLAPFEPEAF 526


>gi|238063292|ref|ZP_04608001.1| signal recognition particle-docking protein ftsY [Micromonospora
           sp. ATCC 39149]
 gi|237885103|gb|EEP73931.1| signal recognition particle-docking protein ftsY [Micromonospora
           sp. ATCC 39149]
          Length = 395

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/291 (39%), Positives = 163/291 (56%), Gaps = 13/291 (4%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           +G+  ++S   LD+   EE+ED LI +D+G+   + IV+ L   R    V   R   ++ 
Sbjct: 104 KGLLGLLSRDHLDEDTWEEIEDSLITADVGIDATRDIVDRL---RERTRVLGTRSATELR 160

Query: 90  ELIHKMLMPLSKP-FNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
            L+   L+    P  +      P      V+LVVGVNG GKTT  GK+++ +   G  V+
Sbjct: 161 ALLAAELVDALDPALDRSLRTAPKDGVPAVVLVVGVNGAGKTTTCGKIARVLVADGRSVL 220

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L A DTFR+AA DQL+ W  R  A+ V     +D A++A++A K+     VD ++IDTAG
Sbjct: 221 LGAADTFRAAAADQLQTWGGRVGAETVRGPEAADPASVAFDAVKRGIDTGVDTVLIDTAG 280

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           RL N   LM  +GK+ RV+ +   H P    L VLDATTGQN L Q  +F  V   TG++
Sbjct: 281 RLQNKVGLMDELGKVKRVVSK---HGPIDETLLVLDATTGQNGLEQARVFTEVVNVTGVV 337

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +TK+DGTA+GG +I +     IPV  +G+GEG +DL PF    F   + G 
Sbjct: 338 LTKLDGTAKGGIVIAVQRKLGIPVKLVGLGEGKDDLAPFDPAQFVDALLGT 388


>gi|294495862|ref|YP_003542355.1| signal recognition particle-docking protein FtsY [Methanohalophilus
           mahii DSM 5219]
 gi|292666861|gb|ADE36710.1| signal recognition particle-docking protein FtsY [Methanohalophilus
           mahii DSM 5219]
          Length = 351

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 146/261 (55%), Gaps = 13/261 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKP 102
           ELE  L+ SDI ++V++KIV    +EL+  R     +  +++ D + + IH ++      
Sbjct: 86  ELEMSLLESDIAISVSEKIVTDVKQELVGSRKKIGSNTGKIVEDALKKSIHDVMSANVFD 145

Query: 103 FNW--DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           F+   D   +P  I+ VG+NG GKTT I K++ ++      V++AAGDTFR+ AIDQ+ +
Sbjct: 146 FDEFIDSLEKPVNIVFVGINGTGKTTSIAKIAHRLKAMNKSVVIAAGDTFRAGAIDQIAV 205

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A+R     +  + G D AA+ Y+A + A+A   DV++ DTAGR+H N  LMA + K+ R
Sbjct: 206 HAERIGVKLIKHQEGGDPAAVVYDAVQYAKAHDSDVVLSDTAGRMHTNVNLMAQLQKICR 265

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V        P  VL V +A  G +A+ + E F+      G I+TK D  ++GG  I I  
Sbjct: 266 V------SPPDLVLFVDEAVAGNDAVERAEQFNEAVPVDGSILTKTDADSKGGAAISIAY 319

Query: 281 THKIPVYFLGVGEGINDLEPF 301
               P+ FLG+G+   DL+ F
Sbjct: 320 ITGKPIVFLGLGQEYEDLKKF 340


>gi|163781730|ref|ZP_02176730.1| signal recognition particle receptor protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882950|gb|EDP76454.1| signal recognition particle receptor protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 439

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/311 (35%), Positives = 163/311 (52%), Gaps = 34/311 (10%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           LT+ F+ T  KLK+       +R+L D V   + D L   DI +A+ +  V+  +TKR+ 
Sbjct: 5   LTEKFSGTLSKLKK-------ARKLTDKV---INDAL--RDIRLALLEADVDYEVTKRFL 52

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH------------RPHVILVVGVNGVGK 124
           K V  +R L   S  + K L P  +     +              +   +L VG+ G GK
Sbjct: 53  KKVR-ERAL---SSEVKKNLSPAEQVITIVYEELVNILGKEKEDLKKGTVLFVGLQGTGK 108

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+  +   G KV +++ D  R AA+ QL+  A+R    +   E G  A  LA +
Sbjct: 109 TTTIGKLAHLLKKKGFKVAVSSTDVRRPAAMLQLERLAERVGVPYYSFEEGLSAVELARK 168

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A ++A+ + VD L++DTAGRLH +  LM    + +R +K  +   P  ++ V DA  GQ 
Sbjct: 169 AVERAKREGVDYLLLDTAGRLHVDEELM----EELRSIK--EEVKPSEIIYVADAMQGQT 222

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL   + FH + G TG+++TKMDG ARGG  + +  T  +P+ F+GVGE I DLEPF   
Sbjct: 223 ALETAKTFHELLGLTGVVLTKMDGDARGGLALSVRETLGVPIKFIGVGEKIEDLEPFYPD 282

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 283 RVAQRILGLGD 293


>gi|227548999|ref|ZP_03979048.1| signal recognition particle GTPase [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078909|gb|EEI16872.1| signal recognition particle GTPase [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 517

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 175/306 (57%), Gaps = 13/306 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           I KL    + +   + +G+  I+++  LD+   EE+ED LI +D+G  +  K+ E L  K
Sbjct: 218 IGKLRGRLSRSQNAIGQGLLGILTAGDLDEDAWEEIEDTLIMADLGTQLTLKVSESLRAK 277

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTT 126
              + VS +    +   L+ + L+  + P   D S        +P VILVVGVNG GKTT
Sbjct: 278 IAERGVSSE---AEARALLREALIEAAHP-EMDRSIKAMPNEGKPAVILVVGVNGTGKTT 333

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL++ +   G  V+L A DTFR+AA DQL+ W  R  A  V  + G+D A++A++A 
Sbjct: 334 TTGKLARVLVSMGHSVVLGAADTFRAAAADQLETWGRRVGASTVRGKEGADPASVAFDAV 393

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
                +  DV+++DTAGRLH  + LM  +GK+ RV+++   H    VL VLDAT GQN +
Sbjct: 394 ATGVDQGADVVLVDTAGRLHTATGLMDQLGKVRRVVEKKS-HV-DEVLLVLDATVGQNGI 451

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F
Sbjct: 452 TQARVFREVVNITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESF 511

Query: 307 SAVITG 312
              + G
Sbjct: 512 VDALLG 517


>gi|269795674|ref|YP_003315129.1| signal recognition particle-docking protein FtsY [Sanguibacter
           keddieii DSM 10542]
 gi|269097859|gb|ACZ22295.1| signal recognition particle-docking protein FtsY [Sanguibacter
           keddieii DSM 10542]
          Length = 405

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 181/305 (59%), Gaps = 22/305 (7%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +  A +   L   +  ++S   L +   +ELE+ L+ +D+G   A +++++L T+  
Sbjct: 102 RLRERLARSGSPLGTRLLAVLSRDHLTEDDWDELEETLLLADMGAGPAGELIDDLRTQ-- 159

Query: 76  AKDVSVQRV--LYDVSELIHKMLMPLSKP-FNWDFS---------HRPHVILVVGVNGVG 123
              V VQ V     V  ++   L+ L  P  +   S           P V+LVVGVNG G
Sbjct: 160 ---VRVQGVKDAAGVRAMLRGALVTLVDPTLDRSLSTTATTTDGTKVPAVVLVVGVNGTG 216

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALA 182
           KTT +GKL++ +   G +V+L A DTFR+AA DQL  W  R   + + S + G+D AA+A
Sbjct: 217 KTTTVGKLTRVLVADGNQVVLGAADTFRAAAADQLTTWGARVGVETIRSFKDGADPAAVA 276

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS-VLQVLDATT 241
           ++A +  + + VDV+++DTAGRL N + LM  +GK+ RV+ +    AP S VL VLDATT
Sbjct: 277 FDAVRAGKERGVDVVLVDTAGRLQNKAGLMDELGKISRVITK---EAPLSEVLLVLDATT 333

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  VAG TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF
Sbjct: 334 GQNGLNQARVFAEVAGVTGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPF 393

Query: 302 VAKDF 306
             ++F
Sbjct: 394 DPEEF 398


>gi|156937965|ref|YP_001435761.1| signal recognition particle-docking protein FtsY [Ignicoccus
           hospitalis KIN4/I]
 gi|156566949|gb|ABU82354.1| signal recognition particle-docking protein FtsY [Ignicoccus
           hospitalis KIN4/I]
          Length = 340

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/199 (41%), Positives = 122/199 (61%), Gaps = 6/199 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+ +GVNGVGKTT I K++  M  AG+  +LAA DTFR+ A++QLK+ A+R     +   
Sbjct: 145 IMFMGVNGVGKTTTIAKVAYAMKRAGVTPVLAAADTFRAGAVEQLKVHAERMGVPIITKP 204

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            GSD A++AY+A + A+A+  +V++IDTAGR+H +  LM  + K+ RV +      P   
Sbjct: 205 YGSDPASVAYDAIEYAKARGFNVVLIDTAGRMHVDVDLMNELRKVARVAE------PDYK 258

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + VLDA TG +A+ Q + F    G   +I+TK+D  A+GG ++ +  T K PV +LGVG+
Sbjct: 259 VLVLDALTGNDAVEQAKFFDEAVGVDAVILTKVDADAKGGAVLSVAATIKKPVLYLGVGQ 318

Query: 294 GINDLEPFVAKDFSAVITG 312
              DL  F  K F   + G
Sbjct: 319 NYEDLIKFDPKWFVERLLG 337


>gi|256809975|ref|YP_003127344.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus fervens AG86]
 gi|256793175|gb|ACV23844.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus fervens AG86]
          Length = 397

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/258 (35%), Positives = 149/258 (57%), Gaps = 16/258 (6%)

Query: 56  SDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWD 106
           +D+ + V +K++E    EL+ K+ + D  V+ +  +     +  ++ +  + + +    +
Sbjct: 125 ADVALEVVEKLIENIKNELVGKKISPDDDVEEITINAVKNAIKNILSQEKIDIEEIIKKN 184

Query: 107 FSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            +  +P VI+ VG+NG GKTT I KL+ K+   G  V+LAAGDTFR+ AI+QL+  A   
Sbjct: 185 KAQGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNI 244

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +  + G+D+AA+ Y+A + A+A+ +DV++ DTAGR   N+ LM  I K++RV K  
Sbjct: 245 GVKVIKHKQGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNTNLMEEIKKVVRVTK-- 302

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  V+ V DA TG +A+ Q E F+      G+I+TK+D  A+GG  + I      P
Sbjct: 303 ----PDLVIFVGDALTGNDAVYQAEEFNKAVDIDGIILTKVDADAKGGAALSIGYAIGKP 358

Query: 286 VYFLGVGEGINDLEPFVA 303
           + +LGVG+  +DL  F A
Sbjct: 359 ILYLGVGQRYSDLIEFDA 376


>gi|145296027|ref|YP_001138848.1| hypothetical protein cgR_1950 [Corynebacterium glutamicum R]
 gi|140845947|dbj|BAF54946.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 586

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/285 (37%), Positives = 173/285 (60%), Gaps = 13/285 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           I+S+  LD+   E++E +LI++D+G  V  ++V++L  K   + V  +    +   ++ +
Sbjct: 308 ILSAGDLDEDAWEDIEAMLIKADLGSKVTARVVDKLRDKIAERGVGSE---AEARAMLRE 364

Query: 95  MLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
            L+   +P + D S        +P V+LVVGVNG GKTT  GKL++ +   G KV+L A 
Sbjct: 365 TLIDACRP-DLDRSIKAMPNEGKPAVVLVVGVNGTGKTTTTGKLARVLVSMGHKVVLGAA 423

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA DQL+ W  R  A+ V    G+D A++A++A  +   ++ DV++IDTAGRLH 
Sbjct: 424 DTFRAAAADQLETWGRRVGAETVRGAEGADPASIAFDAVAKGVERQADVVLIDTAGRLHT 483

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           ++ LM  +GK+ RV+++        VL VLD+T GQN ++Q  +F  V   TG+++TK+D
Sbjct: 484 STGLMDQLGKVKRVVEKK--AVVDEVLLVLDSTVGQNGMQQARIFREVVEITGVVLTKLD 541

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           GTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 542 GTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 586


>gi|332157901|ref|YP_004423180.1| signal recognition particle protein [Pyrococcus sp. NA2]
 gi|331033364|gb|AEC51176.1| signal recognition particle protein [Pyrococcus sp. NA2]
          Length = 322

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 145/259 (55%), Gaps = 16/259 (6%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF------SHRPHV 113
           A+ ++I + L+ K+     + ++++ + V + + ++L P   P   D       + +P+V
Sbjct: 69  ALKERIKKNLVGKKVKIGTNKEKIIEEAVRDAVLEILRP---PRKIDLIEEIKKAEKPYV 125

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL VG NG GKTT I KL+  +   G  V++AA DTFR+ AI+Q++  A R     +  +
Sbjct: 126 ILFVGFNGSGKTTTIAKLAHWLKKNGFSVVIAASDTFRAGAIEQIEEHAKRIGVKVIKHK 185

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G+D AA+AY+A + A+A+ +DV++IDTAGR   N  LM  + K+ RV K      P+ V
Sbjct: 186 YGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTK------PNLV 239

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + V DA  G   + Q   F+      G+I+TK+D  ARGG  + +      P+ F+G+G+
Sbjct: 240 IFVGDALAGNAIIEQAREFNEAVKIDGVILTKLDADARGGSALSVTYATNAPILFVGIGQ 299

Query: 294 GINDLEPFVAKDFSAVITG 312
           G +DL PF  + F   I G
Sbjct: 300 GYDDLIPFDERWFVERILG 318


>gi|284163534|ref|YP_003401813.1| signal recognition particle-docking protein FtsY [Haloterrigena
           turkmenica DSM 5511]
 gi|284013189|gb|ADB59140.1| signal recognition particle-docking protein FtsY [Haloterrigena
           turkmenica DSM 5511]
          Length = 529

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/261 (35%), Positives = 137/261 (52%), Gaps = 13/261 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWD 106
           ELE  L+ SD+ + V  +I++ L  +   +  S      DV  E +   +  +     +D
Sbjct: 261 ELEMALLSSDVEMGVTDEILDNLRDELIGETRSFTTSTGDVIEEALRDAIYDVISVGQFD 320

Query: 107 FSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           F  R      P  I+  GVNGVGKTT I KLS+   + G   ++A GDT+R+ A +Q++ 
Sbjct: 321 FDERIAAAEKPVTIVFTGVNGVGKTTSIAKLSRYFEERGYSTVMANGDTYRAGANEQIEQ 380

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A+      +  E G D AA+ Y+  + A+A  +DV++ DTAGRLH N  LM  + K+ R
Sbjct: 381 HAEALGTKLITHEQGGDPAAVLYDGVEYAEANDIDVVLGDTAGRLHTNEGLMDQLEKIDR 440

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V+       P   L V +A  GQ+A+ +   F+  A   G I+TK D  + GG  I I  
Sbjct: 441 VV------GPDMTLFVDEAVAGQDAVNRAREFNEAAEIDGAILTKADADSNGGAAISIAH 494

Query: 281 THKIPVYFLGVGEGINDLEPF 301
               P+ FLGVG+G +DLEPF
Sbjct: 495 VTGKPILFLGVGQGYDDLEPF 515


>gi|212374985|pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
           Recognition Particle Receptor From The Archaeon
           Pyrococcus Furiosus
          Length = 328

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 146/271 (53%), Gaps = 21/271 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQ-KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           D +RE+++  L+   + +   + KI+EE + +  ++ +   R + D+ E I K       
Sbjct: 74  DALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRI-DLIEEIRK------- 125

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                 + +P+VI  VG NG GKTT I KL+  + + G  V++AA DTFR+ AI+QL+  
Sbjct: 126 ------AEKPYVIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEH 179

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A R     +    G+D AA+AY+A + A+A+ +DV++IDTAGR   N  L     K+ RV
Sbjct: 180 AKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLXDEXKKIARV 239

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            K      P+ V+ V DA  G   + Q   F+      G+I+TK+D  ARGG  + I   
Sbjct: 240 TK------PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYV 293

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              P+ F+GVG+G +DL PF  + F   I G
Sbjct: 294 IDAPILFVGVGQGYDDLRPFEKEWFLERIFG 324


>gi|38234113|ref|NP_939880.1| putative cell division protein [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200375|emb|CAE50063.1| Putative cell division protein [Corynebacterium diphtheriae]
          Length = 495

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 169/287 (58%), Gaps = 17/287 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSEL 91
           ++S+  LD+   E++E LLI++D+GV +   ++++L   + +R  ++ +  R +      
Sbjct: 217 MLSAGDLDEEAWEDIEALLIQADLGVGITTAVIDQLRQLIAERGVENEAQARAM------ 270

Query: 92  IHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           + + L+   KP          +  +P V+LVVGVNG GKTT  GKL++ +   G  V+L 
Sbjct: 271 LRECLINACKPELDRSIKAMPYDGKPAVVLVVGVNGTGKTTTTGKLARVLVSLGHSVVLG 330

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR+AA DQL+ W  R +A  V    G+D A++A++A         DV++IDTAGRL
Sbjct: 331 AADTFRAAAADQLETWGRRVNAHTVRGAEGADPASVAFDAVAYGVDSHADVVLIDTAGRL 390

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           HN+S LM  +GK+ RV+++        VL VLDATTGQN L Q   F  V   TG+++TK
Sbjct: 391 HNSSNLMDQLGKVKRVVEK--KAVVDEVLLVLDATTGQNGLAQARTFSEVVNITGVVLTK 448

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 449 LDGTAKGGIVFQVQEELGVPVKLVGLGEGSDDLAPFEVEGFVDALLG 495


>gi|218884418|ref|YP_002428800.1| Probable signal recognition particle protein [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766034|gb|ACL11433.1| Probable signal recognition particle protein [Desulfurococcus
           kamchatkensis 1221n]
          Length = 296

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 168/305 (55%), Gaps = 16/305 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             +KL + F+    +  E  + ++SSR +L + + EEL+  L+ +D+   VA+ I  EL 
Sbjct: 1   MFKKLREVFS----RFIETASSLLSSREKLLESI-EELKLNLVANDVAYEVAENIASELT 55

Query: 72  TKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVI 128
            +     + S + ++  + E++      L+     +   S +P  ++ +GVNGVGKTT I
Sbjct: 56  MRVEEGSIKSREELVKALREILLSYFTGLNSIDLLSLANSRKPLKLVFLGVNGVGKTTTI 115

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            K++  M + GLK ++ A DTFR+ A +QLKI ++RT       + GSD AAL Y+A + 
Sbjct: 116 AKVAVYMRENGLKPLMVAADTFRAGAQEQLKIHSERTGIPVFTGKYGSDPAALVYDAIQY 175

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
              +  +V +IDTAGR+H +  L+  + K++RV K      P   + V+DA TG +AL Q
Sbjct: 176 GLNRGFNVFLIDTAGRMHVDVDLVNELKKIVRVAK------PDVKILVVDALTGNDALEQ 229

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF-S 307
              F+   G   +++TK+D    GG  + +V   K PV F+GVG+   DL+PF   ++  
Sbjct: 230 ARFFNEAVGVDCVVVTKVDAYEEGGVPLSLVYILKKPVLFIGVGQDYKDLKPFNPIEYVE 289

Query: 308 AVITG 312
            ++TG
Sbjct: 290 RILTG 294


>gi|325968430|ref|YP_004244622.1| signal recognition particle-docking protein FtsY [Vulcanisaeta
           moutnovskia 768-28]
 gi|323707633|gb|ADY01120.1| signal recognition particle-docking protein FtsY [Vulcanisaeta
           moutnovskia 768-28]
          Length = 305

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 161/305 (52%), Gaps = 23/305 (7%)

Query: 16  KLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL   F S +  +   IT   +S  +L + +R+EL   L+ SD+ V VA  I + ++   
Sbjct: 4   KLKNAFKSFTNTIVNSITTTELSEDKLSE-IRDELFMQLVESDVAVDVADAICDAIIN-- 60

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFN----WDF---------SHRPHVILVVGVNG 121
           Y + + V R     S + + +L  ++K FN     DF         + +P V+L +G NG
Sbjct: 61  YLRGIKVPRFGDKESMIRNGILDVMNKLFNDIPDVDFMGEVTRILQNKKPVVLLFLGPNG 120

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT I K++ ++   G   + AA DT+R+ AI+QL+  A +     +    GSD AA+
Sbjct: 121 YGKTTTIAKITYQLMRRGYTAVWAAADTYRAGAIEQLEGHATKLGVRVIKHSYGSDPAAV 180

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A   A+ + +D ++IDTAGR+H +  LM  + K+ RV +      P   + + DA  
Sbjct: 181 AYDAISHAKVRSIDYVMIDTAGRMHTDINLMNELSKIQRVSR------PDLSIFIADALL 234

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G  AL   + +       GLI+TK+D   +GG ++  +   K P+YFLGVG+G +DL PF
Sbjct: 235 GNEALDIAKYYSKYVRIDGLIVTKVDAYPKGGAILTFLYELKKPIYFLGVGQGYDDLRPF 294

Query: 302 VAKDF 306
              +F
Sbjct: 295 NKMEF 299


>gi|296117611|ref|ZP_06836195.1| signal recognition particle GTPase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969342|gb|EFG82583.1| signal recognition particle GTPase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 559

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 171/289 (59%), Gaps = 11/289 (3%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           +G+  I+S+  LD+   EE+ED LI +D+G  V  K+ + L  K   + VS +    +  
Sbjct: 274 QGLMGILSAGDLDEDAWEEIEDTLIMADLGTTVTMKVSDSLRQKIAERGVSSE---AEAR 330

Query: 90  ELIHKMLMPLSKP-FNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
            ++ + L+ +  P  +      PH     VI+VVGVNG GKTT  GKL++ +   G  V+
Sbjct: 331 AMLREALIEVGHPEMDRSIKAMPHEGKPAVIMVVGVNGTGKTTTTGKLARVLVSMGHSVL 390

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L A DTFR+AA DQL+ W  R  A  V  + G+D A++A++A  +   ++VDV+++DTAG
Sbjct: 391 LGAADTFRAAAADQLETWGRRVGATTVRGKEGADPASVAFDAVAKGVEQQVDVVLVDTAG 450

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RLH ++ LM  +GK+ RV+++    +   VL V+DAT GQN L Q  +F  V   TG+++
Sbjct: 451 RLHTSNDLMDQLGKVKRVVEKK--SSVDEVLLVIDATVGQNGLMQARVFREVVDITGVVL 508

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           TK+DGTA+GG +  +     +PV  +G+GEG + L PF  + F   + G
Sbjct: 509 TKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADHLAPFEVEGFVDALLG 557


>gi|261402774|ref|YP_003246998.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus vulcanius M7]
 gi|261369767|gb|ACX72516.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus vulcanius M7]
          Length = 377

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/258 (35%), Positives = 148/258 (57%), Gaps = 16/258 (6%)

Query: 56  SDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWD 106
           +D+ + V +K++E    EL+ ++   D  V+ +  +     +  ++ +  + L +    +
Sbjct: 105 ADVALDVVEKLIENIKKELVGRKITPDDDVEEITINAIRTAIKNILSQKKIDLEEIIKAN 164

Query: 107 FSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            +  +P VI+ VG+NG GKTT I KL+ K+   G  V+LAAGDTFR+ AI+QL+  A   
Sbjct: 165 KAKGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNI 224

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +  + G+D+AA+ Y+A + A+A+ +DV++ DTAGR   N+ LM  I K++RV K  
Sbjct: 225 GVKVIKHKQGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNANLMEEIKKVVRVTK-- 282

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  V+ V DA TG +A+ Q E F+      G+I+TK+D  A+GG  + I      P
Sbjct: 283 ----PDLVIFVGDALTGNDAVYQAEEFNRAVNIDGIILTKVDADAKGGAALSIGYAIGKP 338

Query: 286 VYFLGVGEGINDLEPFVA 303
           + +LGVG+  +DL  F A
Sbjct: 339 ILYLGVGQRYSDLVEFNA 356


>gi|14591436|ref|NP_143516.1| signal recognition particle protein [Pyrococcus horikoshii OT3]
 gi|3258098|dbj|BAA30781.1| 326aa long hypothetical signal recognition particle protein
           [Pyrococcus horikoshii OT3]
          Length = 326

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/273 (35%), Positives = 150/273 (54%), Gaps = 25/273 (9%)

Query: 45  VREELEDLLIRSDIGVAV-----AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           V +EL+D + R+ +G  V      +KI+EE + K   + ++ ++ + D+ E I K     
Sbjct: 70  VVDELKDRIKRNLVGKKVRIGTNKEKIIEEAVRKAVLEILTPEKKM-DLLEEIKK----- 123

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
                   + +P+VIL VG NG GKTT I KL+  +   G  V++AA DTFR+ AI+QL+
Sbjct: 124 --------AEKPYVILFVGFNGSGKTTTIAKLAHWLKKNGFSVVIAASDTFRAGAIEQLE 175

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A +     +  + G+D AA+AY+A + A+A+ +DV++IDTAGR   N  LM  + K+ 
Sbjct: 176 EHAKKVGVKVIKHKYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIA 235

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV K      P+ V+ V D+  G   + Q   F+      G+I+TK+D  ARGG  + I 
Sbjct: 236 RVTK------PNLVIFVGDSLAGNAIVEQARQFNQAVKIDGVILTKLDADARGGAALSIS 289

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                P+ F+G+G+G  DL PF  + F   I G
Sbjct: 290 HVINAPILFVGIGQGYEDLIPFDERWFVEKILG 322


>gi|220912979|ref|YP_002488288.1| signal recognition particle-docking protein FtsY [Arthrobacter
           chlorophenolicus A6]
 gi|219859857|gb|ACL40199.1| signal recognition particle-docking protein FtsY [Arthrobacter
           chlorophenolicus A6]
          Length = 400

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/283 (40%), Positives = 177/283 (62%), Gaps = 6/283 (2%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLY 86
           + +G+  ++SS ++D+ V +E+E+ L+ +D+G     ++V+ L  + +     S + V  
Sbjct: 114 MGKGLLALLSSDKIDENVWDEVEETLLLADLGTEPTMQLVDALRERVKVLGTRSPEHVKA 173

Query: 87  DVSELIHKMLMP-LSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
            + E + K++ P + +  N      +P V++VVGVNGVGKTT +GKL++ +      V+L
Sbjct: 174 MLREELIKVVDPTMDRTLNVQRHGDKPAVMMVVGVNGVGKTTTVGKLARVLVAEDKDVIL 233

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
            A DTFR+AA +QL  W  R     V S+I G+D A++AYEA K    ++VDV++IDTAG
Sbjct: 234 GAADTFRAAAAEQLATWGQRVGVPTVKSDIDGADPASVAYEAVKAGIDQEVDVVMIDTAG 293

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RL N   LM  +GK+ RV+++L       VL VLDATTGQN L Q  +F  V   TG+++
Sbjct: 294 RLQNKVGLMDELGKVKRVVEKL--AEVDEVLLVLDATTGQNGLNQARVFSEVVNITGIVL 351

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TK+DGTA+GG ++ I  +  +PV  +G+GEG +DL PF A+ F
Sbjct: 352 TKLDGTAKGGIVVAIQKSLGVPVKLIGLGEGADDLAPFDAEQF 394


>gi|254383300|ref|ZP_04998653.1| signal recognition particle [Streptomyces sp. Mg1]
 gi|194342198|gb|EDX23164.1| signal recognition particle [Streptomyces sp. Mg1]
          Length = 412

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 123/318 (38%), Positives = 182/318 (57%), Gaps = 19/318 (5%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+E+ L+ +D+GV   Q
Sbjct: 103 EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVVPTQ 162

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---------SHRPHVIL 115
           ++V+ L   R    V   R   D+  L+ + L+ L      DF         +  P V++
Sbjct: 163 ELVDRL---RDRVKVLGTRTPADLRALLKEELLTL---VGTDFDRAVKTEGGADTPGVVM 216

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W DR  A  V    G
Sbjct: 217 VVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGDRVGARTVRGPEG 276

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVL 234
            D A++AY+A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++   H P   VL
Sbjct: 277 GDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEVL 333

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG
Sbjct: 334 LVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEG 393

Query: 295 INDLEPFVAKDFSAVITG 312
            +DL PF  + F   + G
Sbjct: 394 ADDLAPFEPEAFVDALIG 411


>gi|111023488|ref|YP_706460.1| cell division protein [Rhodococcus jostii RHA1]
 gi|110823018|gb|ABG98302.1| cell division protein [Rhodococcus jostii RHA1]
          Length = 467

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/273 (41%), Positives = 163/273 (59%), Gaps = 13/273 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           EE+ED L+ +D+G A   KIV  L  +  ++ V   R   D   L+ ++L+   +P   D
Sbjct: 201 EEVEDTLLIADLGSATTTKIVTSLREQMASRSV---RTEADARALLREVLVAELRP-ELD 256

Query: 107 FSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            S R       P V+LVVGVNG GKTT  GKL++ +   G +V+L A DTFR+AA DQL+
Sbjct: 257 RSIRALPHDDHPAVLLVVGVNGTGKTTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQ 316

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            WA+R  A+ V  +  +D AA+A++A  +     VDV++IDTAGRLH  + LM  +GK+ 
Sbjct: 317 TWAERVGAEVVRGKEAADPAAVAFDAVAKGIDNGVDVVLIDTAGRLHTKTGLMDELGKVK 376

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV+++    +   VL VLDAT GQN L Q  +F  V   TG+++TK+DGTA+GG +  + 
Sbjct: 377 RVIEK--KASVDDVLLVLDATIGQNGLAQARVFAEVVDITGVVLTKLDGTAKGGIVFQVQ 434

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
               +PV  +G+GEG +DL PF    F   + G
Sbjct: 435 HELGVPVKLVGLGEGADDLAPFEPGAFVDALLG 467


>gi|60620671|ref|NP_341888.2| signal recognition particle receptor protein [Sulfolobus
           solfataricus P2]
 gi|261601953|gb|ACX91556.1| signal recognition particle-docking protein FtsY [Sulfolobus
           solfataricus 98/2]
          Length = 358

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 163/285 (57%), Gaps = 27/285 (9%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQRVLYD---- 87
           I  + ++D + EEL   L+ SD+   V +KI+E+L    + K+  +   ++R++ D    
Sbjct: 81  IKEKDIEDFI-EELRYQLLESDVSFEVTEKILEDLKENIIGKKVKRSDDLERIVKDSLKK 139

Query: 88  -VSELIHK-----MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
            ++E+I K     +L  + K      S +P++I+  G+NGVGKTT I K +  +   GL 
Sbjct: 140 SITEIITKNNAINVLEEIKK------SPKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLS 193

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            +++A DTFR+AA +QL++ +       +    G D A++A++A + A+++ +DV++IDT
Sbjct: 194 CIISASDTFRAAAQEQLEVHSRNLEIPLIKGRYGGDPASVAFDAIRAAKSRGIDVVLIDT 253

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGR+H ++ L+  + +++ + K      P+  + VLD+  G +AL Q + F    G   +
Sbjct: 254 AGRMHTDTDLVNELKRVVNIAK------PNLKILVLDSLGGNDALEQAKYFENNVGFDLV 307

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           I+TK+D   +GG ++ +      PV +LG+G+  +DL PF A+ F
Sbjct: 308 ILTKVDADVKGGVILSLAYELNKPVGYLGIGQAYDDLIPFNAEWF 352


>gi|227504760|ref|ZP_03934809.1| signal recognition particle GTPase [Corynebacterium striatum ATCC
           6940]
 gi|227198610|gb|EEI78658.1| signal recognition particle GTPase [Corynebacterium striatum ATCC
           6940]
          Length = 559

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/290 (39%), Positives = 168/290 (57%), Gaps = 13/290 (4%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           +G+  I+S+  LD+   EE+ED LI +D+G     K+ E L  K   + VS +    +  
Sbjct: 274 QGLLGILSAGDLDEDAWEEIEDTLIMADLGTKSTLKVTESLRDKIAERGVSSEE---EAR 330

Query: 90  ELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
            ++ + L+    P   D S        +P VI+VVGVNG GKTT  GKL++ +   G KV
Sbjct: 331 AMLRESLIEAGHP-EMDRSIKAMPNEGKPAVIMVVGVNGTGKTTTTGKLARVLVAMGHKV 389

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA DQL+ W  R  A  V  + G+D A++A++A      + VDV+++DTA
Sbjct: 390 LLGAADTFRAAAADQLETWGRRVGATTVRGKEGADPASVAFDAVAAGVDQGVDVVLVDTA 449

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH +  LM  +GK+ RV+++        VL VLDAT GQN L Q  +F  V   TG++
Sbjct: 450 GRLHTSVDLMDQLGKVKRVVEKK--AEVDEVLLVLDATVGQNGLTQARIFREVVDITGVV 507

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 508 LTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 557


>gi|330834459|ref|YP_004409187.1| signal recognition particle-docking protein FtsY [Metallosphaera
           cuprina Ar-4]
 gi|329566598|gb|AEB94703.1| signal recognition particle-docking protein FtsY [Metallosphaera
           cuprina Ar-4]
          Length = 378

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 155/285 (54%), Gaps = 31/285 (10%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
           +E ++D+I   R +          L+  D+ + V +KI+E+L      K VS +    ++
Sbjct: 102 EEDVSDLIDELRFE----------LLEDDVSLEVTEKILEDLKRNLVGKKVSRKE---NL 148

Query: 89  SELIHKMLMP-----LSKPF-------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            +LIH+ L       L K +           S +P V++  GVNGVGKTT I K +  + 
Sbjct: 149 EQLIHESLKKSLKDILKKNYIEKDVVETIKTSKKPFVVMFFGVNGVGKTTTIAKFAMLLK 208

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
            +GL V++AA DTFR+AA +QL + A +     V  + G D A++A++A + A+++ +D 
Sbjct: 209 KSGLSVIIAASDTFRAAAQEQLAVHASKLEVPLVKGKYGGDPASVAFDAIQSAKSRGIDA 268

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDTAGR+H +  L+  + +++R+ K      P+  + VLD+  G +AL+Q E F    
Sbjct: 269 VLIDTAGRMHTDKDLVEELRRLVRIAK------PNLKVLVLDSLAGNDALKQAEYFEKAV 322

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G   +I+TK+D  A+GG  + +      PV +LG+G+  + L  F
Sbjct: 323 GYDFVILTKVDADAKGGIALSLAYELGKPVMYLGMGQDYDSLVKF 367


>gi|226365990|ref|YP_002783773.1| signal recognition particle receptor [Rhodococcus opacus B4]
 gi|226244480|dbj|BAH54828.1| signal recognition particle receptor [Rhodococcus opacus B4]
          Length = 474

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/275 (42%), Positives = 165/275 (60%), Gaps = 17/275 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           EE+ED L+ +D+G A   KIV  L  +  ++ V   R   D   L+ ++L+   +P   D
Sbjct: 208 EEVEDTLLIADLGSATTTKIVTSLREQMASRSV---RTEADARALLREVLVAELRP-ELD 263

Query: 107 FSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            S R       P V+LVVGVNG GKTT  GKL++ +   G +V+L A DTFR+AA DQL+
Sbjct: 264 RSIRALPHDDHPAVLLVVGVNGTGKTTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQ 323

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            WA+R  A+ V  +  +D AA+A++A  +     VDV++IDTAGRLH  + LM  +GK+ 
Sbjct: 324 TWAERVGAEVVRGKEAADPAAVAFDAVSKGIDNGVDVVLIDTAGRLHTKTGLMDELGKVK 383

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV+++    +   VL VLDAT GQN L Q  +F  V   TG+++TK+DGTA+GG  I   
Sbjct: 384 RVIEKK--ASVDDVLLVLDATIGQNGLAQARVFAEVVDITGVVLTKLDGTAKGG--IVFQ 439

Query: 280 VTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           V H+  +PV  +G+GEG +DL PF    F   + G
Sbjct: 440 VQHELGVPVKLVGLGEGADDLAPFEPGAFVDALLG 474


>gi|16903158|gb|AAL30433.1|AF439264_1 FtsY NG domain [Haloferax volcanii]
          Length = 266

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 138/258 (53%), Gaps = 17/258 (6%)

Query: 53  LIRSDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
           L++SD+ + VA++I+E   E L     K V     L  VSE +H  L  +     +DF  
Sbjct: 3   LLQSDVEMQVAEEILETIREKLIGETRKQVESTGQL--VSEALHDALYEVISVGQFDFDQ 60

Query: 110 R------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           R      P  ++  G+NGVGKTT I KL+K     G   +LA GDT+R+ A +Q++  A+
Sbjct: 61  RIAEADKPVTLIFTGINGVGKTTTIAKLAKYFEKQGYSTVLANGDTYRAGANEQIREHAE 120

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                 +  E G D AA+ Y+  + A+A  +D+++ DTAGRLH ++ LMA + K+ RV+ 
Sbjct: 121 ALDKKLIAHEQGGDPAAVIYDGVEYAEAHDIDIVLGDTAGRLHTSNDLMAQLEKIDRVV- 179

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P   L V +A  GQ+A+ +   F+  A   G I+TK D  + GG  I I     
Sbjct: 180 -----GPDLTLFVDEAVAGQDAVERARQFNDAAAIDGAILTKADADSNGGAAISIAYVTG 234

Query: 284 IPVYFLGVGEGINDLEPF 301
            P+ FLGVG+G + +E F
Sbjct: 235 KPILFLGVGQGYDHIEKF 252


>gi|302832455|ref|XP_002947792.1| hypothetical protein VOLCADRAFT_79814 [Volvox carteri f.
           nagariensis]
 gi|300267140|gb|EFJ51325.1| hypothetical protein VOLCADRAFT_79814 [Volvox carteri f.
           nagariensis]
          Length = 384

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 111/201 (55%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP  +L+VGVNG GKTT +GKL+ K    G KV L  GDTFR+AA +QL  W  R  A  
Sbjct: 174 RPAAVLIVGVNGAGKTTTVGKLAYKYGKEGAKVFLIPGDTFRAAAAEQLAEWGRRAGATL 233

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                G+   A+      +  A   D++++DTAGRLH    LM  +      +       
Sbjct: 234 GTFREGARPQAVIASRACKDPADVYDLVLVDTAGRLHTAYKLMEELQLCKSAVGTALTGQ 293

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L VLD TTG N L Q   F+     TGLI+TK+DGTARGG ++ +V    +PV F+
Sbjct: 294 PDETLLVLDGTTGLNMLNQAREFNDAVKLTGLILTKLDGTARGGAVVSVVDQLGLPVKFI 353

Query: 290 GVGEGINDLEPFVAKDFSAVI 310
           GVGE   DL+PF A+ F+  +
Sbjct: 354 GVGETAEDLQPFDAEAFAEAL 374


>gi|12045153|ref|NP_072964.1| signal recognition particle-docking protein FtsY [Mycoplasma
           genitalium G37]
 gi|255660341|ref|ZP_05405750.1| signal recognition particle-docking protein FtsY [Mycoplasma
           genitalium G37]
 gi|1346049|sp|P47539|FTSY_MYCGE RecName: Full=Cell division protein ftsY homolog
 gi|1045995|gb|AAC71519.1| signal recognition particle-docking protein FtsY [Mycoplasma
           genitalium G37]
 gi|166078691|gb|ABY79309.1| signal recognition particle-docking protein FtsY [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 346

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 144/270 (53%), Gaps = 13/270 (4%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV--LYDVSELIHKMLM 97
            +D+  +E L + L+  D+G   A KI + ++ +     + + R+     + ELI   ++
Sbjct: 62  NVDEQFKENLFEGLVLLDVGYHAANKICDAIIEQ-----IKLNRITDFQLIKELIIDQII 116

Query: 98  PL---SKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                 K F+ D   +P+   V L VGVNGVGKTT + K++        +V+L AGDTFR
Sbjct: 117 VYYIQDKLFDTDLIVKPNFTNVYLFVGVNGVGKTTTLAKIADFFIKQNKRVLLVAGDTFR 176

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           + AI+QL  WA   + D V         A+ +   K+    K D ++ DT+GRL N   L
Sbjct: 177 AGAIEQLNQWAKLLNCDIVLPNPKEQTPAVIFRGVKKGIDDKYDFVLCDTSGRLQNKLNL 236

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + K+ ++++++    P   L VLD T GQ  L Q ++F+  +  TG+++TKMDG+A+
Sbjct: 237 MNELQKIYQIIQKVSGSEPSETLLVLDGTVGQTGLSQAKVFNEFSKLTGIVLTKMDGSAK 296

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GG ++ I     +PV  +G GE  +DL  F
Sbjct: 297 GGIILAIKDMFNLPVKLIGFGEKTSDLAIF 326


>gi|118786|sp|P27414|DOCK_SULAC RecName: Full=Probable signal recognition particle protein;
           AltName: Full=Docking protein; AltName: Full=P41
 gi|81120|pir||S16482 docking protein - Sulfolobus solfataricus
 gi|1333819|emb|CAA54643.1| signal recognition particle receptor alpha subunit [Sulfolobus
           acidocaldarius]
 gi|3980227|emb|CAA41429.1| docking protein [Sulfolobus solfataricus]
          Length = 369

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 147/271 (54%), Gaps = 21/271 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP---- 98
           + V EEL   L+ SD+   V +KI+E+L      K VS +    +V E++   L      
Sbjct: 96  NDVIEELRFQLLDSDVSYEVTEKILEDLKNNLIGKKVSRRE---EVEEIVINTLKKSITE 152

Query: 99  -LSKPFNWDF-------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            L+K    D          +P VI+  GVNGVGKTT I K+   +    L  ++AA DTF
Sbjct: 153 ILTKNQKTDLIEKIRSSGKKPFVIIFFGVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTF 212

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA +QL   A +     +  + G+D A++A++A   A+++ +DV++IDTAGR+H +S 
Sbjct: 213 RAAAQEQLAYHASKLEVQLIRGKYGADPASVAFDAISFAKSRNIDVVLIDTAGRMHIDSD 272

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           L+  + +++R+ K      P   + +LD+  G +AL Q   F    G   +I+TK+D  A
Sbjct: 273 LVEELKRVLRIAK------PDFRILILDSLAGSDALEQARHFENNVGYDAVILTKVDADA 326

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +GG  + +    K PV ++GVG+  +DL PF
Sbjct: 327 KGGIALSLAYELKKPVVYMGVGQNYDDLIPF 357


>gi|1095511|prf||2109236F dpa gene
          Length = 369

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 147/271 (54%), Gaps = 21/271 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP---- 98
           + V EEL   L+ SD+   V +KI+E+L      K VS +    +V E++   L      
Sbjct: 96  NDVIEELRFQLLDSDVSYEVTEKILEDLKNNLIGKKVSRRE---EVEEIVINTLKKSITE 152

Query: 99  -LSKPFNWDF-------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            L+K    D          +P VI+  GVNGVGKTT I K+   +    L  ++AA DTF
Sbjct: 153 ILTKNQKTDLIEKIRSSGKKPFVIIFFGVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTF 212

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA +QL   A +     +  + G+D A++A++A   A+++ +DV++IDTAGR+H +S 
Sbjct: 213 RAAAQEQLAYHASKLEVQLIRGKYGADPASVAFDAISFAKSRNIDVVLIDTAGRMHIDSD 272

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           L+  + +++R+ K      P   + +LD+  G +AL Q   F    G   +I+TK+D  A
Sbjct: 273 LVEELKRVLRIAK------PDFRILILDSLAGSDALEQARHFENNVGYDAVILTKVDADA 326

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +GG  + +    K PV ++GVG+  +DL PF
Sbjct: 327 KGGIALSLAYELKKPVVYMGVGQNYDDLIPF 357


>gi|55379684|ref|YP_137534.1| signal recognition particle receptor [Haloarcula marismortui ATCC
           43049]
 gi|55232409|gb|AAV47828.1| signal recognition particle receptor [Haloarcula marismortui ATCC
           43049]
          Length = 429

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 144/264 (54%), Gaps = 17/264 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           ++LE  L+ SD+ ++VA +I   V+E LT +  + +S    L  V + + + L  +    
Sbjct: 162 DDLELALLSSDVEMSVANEILDGVKENLTGQTRRRLSSTGNL--VRDALRESLYDVINVG 219

Query: 104 NWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            +DF  R      P  I+  GVNGVGKTT I KL++   D GL  +LA GDT+R+ A +Q
Sbjct: 220 QFDFDERVQQADKPVTIVFTGVNGVGKTTSIAKLAQYFEDRGLSTVLANGDTYRAGANEQ 279

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A+      +  E GSD  A+ Y+A + A+A  +DV++ DTAGRLH +  LMA + K
Sbjct: 280 LEKHAENLDKKIITHEQGSDPTAVVYDAVEYAKANDIDVVLGDTAGRLHTSDDLMAQLEK 339

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + R +       P   L V +A  GQ+A+ +   F+  A   G I+TK D   +GG  I 
Sbjct: 340 IDRNID------PDMTLFVDEAVAGQDAVNRAREFNDAAEIDGAILTKADADPQGGAAIS 393

Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301
           +      P+ FLG G+  +DL+PF
Sbjct: 394 VAHVTGKPILFLGTGQDYDDLDPF 417


>gi|303244020|ref|ZP_07330359.1| signal recognition particle-docking protein FtsY
           [Methanothermococcus okinawensis IH1]
 gi|302485672|gb|EFL48597.1| signal recognition particle-docking protein FtsY
           [Methanothermococcus okinawensis IH1]
          Length = 271

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/194 (42%), Positives = 117/194 (60%), Gaps = 6/194 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P VI+ VG+NG GKTT I KL+ K+ + G  V+LAAGDTFR+ AI+QL+  A     
Sbjct: 61  SKEPVVIVFVGINGTGKTTSIAKLAHKLKNKGYSVVLAAGDTFRAGAIEQLEEHAKNIGV 120

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +  + G+D+AA+ Y+A + A+A+ +DV++ DTAGR   N  LM  I K++RV K    
Sbjct: 121 RVIKHQKGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNINLMDEIKKVVRVTK---- 176

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  V+ V D+  G +A+ Q E F+      G+I+TK+D  A+GG  + I      P+ 
Sbjct: 177 --PDLVVFVGDSLAGNDAINQAEEFNNAVNIDGVILTKVDADAKGGAALSIAYAIGKPIL 234

Query: 288 FLGVGEGINDLEPF 301
           FLGVG+   DLE F
Sbjct: 235 FLGVGQRYEDLEEF 248


>gi|328885323|emb|CCA58562.1| Signal recognition particle receptor protein FtsY [Streptomyces
           venezuelae ATCC 10712]
          Length = 430

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 178/304 (58%), Gaps = 13/304 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    A +   L +G+  ++S   LD+   EE+E+ L+ +D+GVA  Q++VE L   R 
Sbjct: 132 RLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLTADVGVAPTQELVERL---RE 188

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIG 129
              V   R   ++  L+ + L+ L  P           S  P V++VVGVNG GKTT  G
Sbjct: 189 RVRVLGTRTPEELRGLLREELVALLGPELDRTVHTESPSDVPGVVMVVGVNGTGKTTTTG 248

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++AY+A K+ 
Sbjct: 249 KLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEG 308

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQ 248
            A+K DV++IDTAGRLH  + LM  +GK+ RV+++   H P   +L VLDATTGQN L Q
Sbjct: 309 IAEKADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEILLVLDATTGQNGLIQ 365

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF    F  
Sbjct: 366 ARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPGAFVD 425

Query: 309 VITG 312
            + G
Sbjct: 426 ALIG 429


>gi|148508292|gb|ABQ76076.1| signal recognition particle receptor SRalpha [uncultured
           haloarchaeon]
          Length = 413

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/264 (34%), Positives = 141/264 (53%), Gaps = 13/264 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +LE  L+ SD+ + VA++I+  + +K   +    V      V E +   L  +     +D
Sbjct: 143 QLEMALLESDVEIQVAEEILGTIRSKMLGETRAQVNTTAALVEEALSDALYEVISVGQYD 202

Query: 107 FSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           F  R      P  I+  GVNGVGKTT I KL + +   GL V++A GDT+R+ A +Q++ 
Sbjct: 203 FDSRVESADSPMTIVFTGVNGVGKTTSIAKLVQYLESRGLSVVMANGDTYRAGANEQIRE 262

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A       +  E G D AA+ Y+A + A+A  +DV++ DTAGRLH ++ LMA + K+ R
Sbjct: 263 HAKTLDTKLIAHEQGGDPAAVLYDAVEYAEANDIDVVLGDTAGRLHTSNDLMAQLEKIDR 322

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V+       P   L V +A  GQ+A+ + + F+  A   G ++TK D  + GG  I I  
Sbjct: 323 VVN------PDMTLFVDEAVAGQDAVERAKQFNEAAEIDGTVLTKADADSNGGAAISIAY 376

Query: 281 THKIPVYFLGVGEGINDLEPFVAK 304
               P+ FLGVG+  +D+E F  K
Sbjct: 377 VTGKPILFLGVGQEYDDIERFDPK 400


>gi|11499644|ref|NP_070886.1| signal recognition particle receptor (dpa) [Archaeoglobus fulgidus
           DSM 4304]
 gi|2648469|gb|AAB89189.1| signal recognition particle receptor (dpa) [Archaeoglobus fulgidus
           DSM 4304]
          Length = 340

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/259 (35%), Positives = 137/259 (52%), Gaps = 16/259 (6%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSH----- 109
           SD+   V   I E L ++   +   +   L D V E +  ++  +     +DF       
Sbjct: 80  SDVAFEVVDAISEALKSRLVGRRKKLTEKLSDIVMEELRSIIFEILDENRFDFDEFIKEK 139

Query: 110 ----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               +P VI  VGVNG GKTT I K++ ++   G  V+LAAGDTFR+ AI+QL+  A R 
Sbjct: 140 LKEKKPVVIAFVGVNGTGKTTTIAKVANRLIKQGYSVVLAAGDTFRAGAIEQLEEHAKRL 199

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +  + GSD AA+ Y+A K A++K +DV++ DTAGR+H    L+  + K+ RV K  
Sbjct: 200 GVKLIKHKHGSDPAAVIYDAIKHAESKGIDVVLADTAGRMHTKKNLLDQLEKIKRVTK-- 257

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  ++ V ++  G +A+ +  MF    G  G I+TK+D   +GG  I I    K P
Sbjct: 258 ----PDLIIFVDESIAGNDAVERARMFAETVGIDGSILTKLDADPKGGSAISISYVTKKP 313

Query: 286 VYFLGVGEGINDLEPFVAK 304
           V F GVG+  +DL  F +K
Sbjct: 314 VLFFGVGQEYDDLVKFDSK 332


>gi|320101305|ref|YP_004176897.1| signal recognition particle-docking protein FtsY [Desulfurococcus
           mucosus DSM 2162]
 gi|319753657|gb|ADV65415.1| signal recognition particle-docking protein FtsY [Desulfurococcus
           mucosus DSM 2162]
          Length = 296

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 164/297 (55%), Gaps = 25/297 (8%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            RKL + FA    +  +  + I++SR +L + + EE +  L+ SD+    A+ I  +L  
Sbjct: 2   FRKLKEAFA----RFIDTASSILTSREKLLEAI-EEFKLNLVASDVAYEAAEDIAAQL-- 54

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTT 126
            R  ++  V+R   D+ E + ++L+            +   S +P  I+ +GVNGVGKTT
Sbjct: 55  SRRVEEGRVKR-REDLVEALREILLGYFTNLGALDLVSLARSRKPFKIVFLGVNGVGKTT 113

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            I K++  M   G K ++ A DTFR+ A +QLKI ++RT         G D AALAY+A 
Sbjct: 114 TIAKIAVYMRGNGFKPLMVAADTFRAGAQEQLKIHSERTGIPVFTGRYGWDPAALAYDAV 173

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +    +  DV +IDTAGR+H +  L+  + K++RV+K      P+  + V+DA TG +A+
Sbjct: 174 QYGVGRGFDVFLIDTAGRMHVDVDLVNELKKVVRVVK------PNVKILVVDALTGNDAV 227

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI--PVYFLGVGEGINDLEPF 301
            Q   F+   G  G+++TK+D    GG  +P+ + + +  P+ F+GVG+   DL+PF
Sbjct: 228 EQARFFNEAVGVDGVVVTKVDAYEEGG--VPLSLAYVLGKPILFVGVGQDYKDLKPF 282


>gi|297619379|ref|YP_003707484.1| signal recognition particle-docking protein FtsY [Methanococcus
           voltae A3]
 gi|297378356|gb|ADI36511.1| signal recognition particle-docking protein FtsY [Methanococcus
           voltae A3]
          Length = 399

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/235 (36%), Positives = 133/235 (56%), Gaps = 19/235 (8%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           D+ ELI           N + +  P VI+ +G+NG GKTT I KL+ K+   G  +++AA
Sbjct: 178 DIEELIQ----------NKNKNGEPAVIIFLGINGTGKTTSISKLAYKLKQNGHSIVMAA 227

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
           GDTFR+ AI+QL+  A+      +  + G+D+AA+ ++A + A+AKK+DV++ DTAGR  
Sbjct: 228 GDTFRAGAIEQLEEHANNLEVKVIKHQKGADSAAVIFDAIQHAKAKKIDVVLADTAGRQT 287

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            N  LM+ I K++RV K      P  V+ V D+  G +A+ Q E F+      G I+TK 
Sbjct: 288 TNINLMSEIKKVVRVTK------PDLVVFVGDSLAGNDAINQAEEFNNAVNIDGAILTKT 341

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321
           D  A+GG  + I  +   P+ ++GVG+  +DL+ F   D   ++       EEK+
Sbjct: 342 DADAKGGAALSIAHSIGKPILYMGVGQRYSDLQEF---DVDWMVNKLFSENEEKL 393


>gi|311744094|ref|ZP_07717900.1| cell division protein FtsY [Aeromicrobium marinum DSM 15272]
 gi|311313224|gb|EFQ83135.1| cell division protein FtsY [Aeromicrobium marinum DSM 15272]
          Length = 368

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/307 (37%), Positives = 178/307 (57%), Gaps = 19/307 (6%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    A ++  L +G+  I+    LD+    E+E+ L+ +D+GV    ++V+ L T+  
Sbjct: 71  RLRARLARSNSTLGQGLLAILGRSTLDEDAWTEIEETLLAADVGVGPTTELVDRLRTRLR 130

Query: 76  AK---DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-------HVILVVGVNGVGKT 125
            +   D +  RV       + + L+ L  P + D S R         V+LVVGVNG GKT
Sbjct: 131 VEGVHDPAAARVA------LREELLALVDP-SLDRSLRSTGADGRPGVVLVVGVNGTGKT 183

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +G+L++ +      V+L A DTFR+AA DQL+ W +R  A  V    G D A++ +EA
Sbjct: 184 TTVGRLARVLVAEERTVVLGAADTFRAAAADQLQTWGERVGAGVVRGPEGGDPASVGFEA 243

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++  A   DV+++DTAGRLH  + LM  +GK+ RV+++  P     VL V+DATTGQN 
Sbjct: 244 VQRGIADGADVVLVDTAGRLHTKAGLMDELGKVKRVIEKQAPVT--EVLLVIDATTGQNG 301

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q  +F  V   TG+++TK+DGTARGG ++ +     +PV ++G+GEG +DL PF A++
Sbjct: 302 LTQARVFGEVTDVTGIVLTKLDGTARGGIVVAVQRELGVPVKYVGLGEGPDDLAPFDAEE 361

Query: 306 FSAVITG 312
           F   + G
Sbjct: 362 FVDALLG 368


>gi|240103695|ref|YP_002960004.1| GTP-binding signal recognition particle receptor (SRP alpha, SRP54)
           (FtsY/SRP54) [Thermococcus gammatolerans EJ3]
 gi|239911249|gb|ACS34140.1| GTP-binding signal recognition particle receptor (SRP alpha, SRP54)
           (FtsY/SRP54) [Thermococcus gammatolerans EJ3]
          Length = 328

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/275 (35%), Positives = 152/275 (55%), Gaps = 24/275 (8%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSV----QRVLYD-VSELIHKMLMPLSKPFNWDF--- 107
           +D+ + V  ++ E +  K   K V +     +V+ D V E + ++L P  K    +    
Sbjct: 66  ADVALEVVDELRESIKRKLVGKKVKIGTDKAKVIEDAVKEAVLEVLTPPRKINLLEEIRA 125

Query: 108 -SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              +P+VI+ VG NG GKTT I KL+  +   GL V++AA DTFR+ AI+Q++  A R  
Sbjct: 126 KKEKPYVIVFVGFNGSGKTTTIAKLAHWLKKNGLSVVIAASDTFRAGAIEQVEEHAKRVG 185

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +    G+D AA+AY+A + A+A+ +DV+++DTAGR   N  LM  + K++RV K   
Sbjct: 186 VKVIKHSYGADPAAVAYDAIQHAKARGIDVVLVDTAGRNELNRNLMDEMKKIVRVTK--- 242

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI-- 284
              P  V+ V D+  G + + Q   F+      G+I+TK+D  +RGG  + I  +H I  
Sbjct: 243 ---PDLVIFVGDSLAGNSIIDQARQFNEAVKIDGVILTKLDADSRGGAALSI--SHAIGA 297

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319
           P+ F+GVG+G  DL PF  K F  +I     +GEE
Sbjct: 298 PILFVGVGQGYEDLRPFDEKWFVNLI-----FGEE 327


>gi|116754856|ref|YP_843974.1| signal recognition particle-docking protein FtsY [Methanosaeta
           thermophila PT]
 gi|116666307|gb|ABK15334.1| signal recognition particle-docking protein FtsY [Methanosaeta
           thermophila PT]
          Length = 379

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/277 (36%), Positives = 154/277 (55%), Gaps = 20/277 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           II  R L++ +   LE  L+ SD+ + VA++IV  + +       S +++  D  +L+  
Sbjct: 101 IIDERDLEEPLWG-LEMALLESDVALPVAEEIVSSVKSSLVG---SKKKIGSDTGDLVES 156

Query: 95  -----MLMPLSKP-FNWD----FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
                +L  LSK  F++D     + +P  IL VGVNG GKTT I K+++ + + G  V+L
Sbjct: 157 ALRAALLKVLSKNVFDFDEFIKNTPKPVKILFVGVNGTGKTTSIAKVARYLKERGYSVVL 216

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AAGDTFR+ AI+QL+    R     +  + G D AA+ ++A + A+A K DV++ DTAGR
Sbjct: 217 AAGDTFRAGAIEQLETHGQRLDLKVIKHKTGGDPAAVIFDAIEYAKAHKKDVVLADTAGR 276

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LH N  LM  + K++RV K      P  ++ V +A  G +A+ +  +F+     TG I+T
Sbjct: 277 LHTNINLMDQMKKIVRVTK------PDMLIFVDEAIAGNDAVERARLFNESVPITGTILT 330

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           K D  A+GG  I I      P+ FLGVG+   DL  F
Sbjct: 331 KTDADAKGGSAISIAHVTGKPIIFLGVGQDYPDLVKF 367


>gi|289193001|ref|YP_003458942.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus sp. FS406-22]
 gi|288939451|gb|ADC70206.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus sp. FS406-22]
          Length = 400

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 149/258 (57%), Gaps = 16/258 (6%)

Query: 56  SDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWD 106
           +D+ + V +K++E    EL+ ++ + D +V+ +  +     +  ++ +  + + +    +
Sbjct: 128 ADVALEVVEKLIENIKKELVGRKISPDDNVEEITINAVKNAIKNILSQEKIDIEEIIKKN 187

Query: 107 FSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            +  +P VI+ VG+NG GKTT I KL+ K+   G  V+LAAGDTFR+ AI+QL+  A   
Sbjct: 188 KAQGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNI 247

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +  + G+D+AA+ Y+A + A+A+ +DV++ DTAGR   N  LM  I K++RV K  
Sbjct: 248 GVKVIKHKQGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNINLMEEIKKVVRVTK-- 305

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  V+ V DA TG +A+ Q E F+      G+I+TK+D  A+GG  + I      P
Sbjct: 306 ----PDLVIFVGDALTGNDAVCQAEEFNNAVNIDGIILTKVDADAKGGAALSIGYAIGKP 361

Query: 286 VYFLGVGEGINDLEPFVA 303
           + +LGVG+  +DL  F A
Sbjct: 362 ILYLGVGQRYSDLIEFDA 379


>gi|257076819|ref|ZP_05571180.1| signal recognition particle receptor FtsY [Ferroplasma acidarmanus
           fer1]
          Length = 311

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/268 (33%), Positives = 150/268 (55%), Gaps = 20/268 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEEL------LTKRY---AKDVSVQRVLYDVSELIH 93
           D +   +E+ L+ +D+     ++I+E+L      L ++    A +  ++ V+ DV +  +
Sbjct: 43  DELESTIEETLLEADVSYDATEEIIEKLKANLGKLKRKIDYPAVEEELKSVVRDVIQHNN 102

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K  + L          +P VIL +G+NG GKTT IGKL+  +      V+L+A DTFR+ 
Sbjct: 103 KDAVNL-----LTVEKKPFVILFLGINGTGKTTTIGKLAYYLKSNNKSVVLSASDTFRAG 157

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           AIDQL I A     + +  +  SD A++A++A + A+A+K+D ++ID+AGR+  N  L+ 
Sbjct: 158 AIDQLNILAGNVGVEIIKHDFRSDPASVAFDAIEHAKARKMDYVLIDSAGRMQTNKNLLD 217

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ RV K      P   + VLDA  GQ+ + Q   F +      +I+TK+D  A+GG
Sbjct: 218 EMKKIKRVAK------PDMTILVLDAMIGQDVINQALTFSSEINYDSVIVTKLDTDAKGG 271

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            +I I    K P+ F+G+G+ ++D+ PF
Sbjct: 272 SIISISAGIKKPILFVGIGQEMDDIIPF 299


>gi|2130562|gb|AAB58327.1| signal recognition particle receptor alpha subunit [Thermococcus
           zilligii]
          Length = 329

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/264 (36%), Positives = 144/264 (54%), Gaps = 19/264 (7%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHK-----MLMPLSKPFNWDF-------S 108
           VA ++V+EL  K   K V  + R+  D  ++I +     +L  L+ P   D         
Sbjct: 70  VALEVVDELREKIKGKLVGKKVRIGSDKGKIIEEAVKEAVLEVLTPPRRIDLIEEMRKKE 129

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P VI  VG NG GKTT I KL+  +   G  V++AA DTFR+ AI+QL+  A R    
Sbjct: 130 EKPFVIAFVGFNGGGKTTTIAKLAHWLKKQGFSVVVAASDTFRAGAIEQLEEHAKRVGVK 189

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +    G+D AA+AY+A + A+A+ +DV++IDTAGR   N  LM  + K++RV K     
Sbjct: 190 VIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRNELNRNLMDEMKKIVRVTK----- 244

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  V+ V D+  G + + Q   F+      G+I+TK+D  ARGG  + I      P+ F
Sbjct: 245 -PDLVIFVGDSLAGNSIIEQARQFNEAVRIDGVILTKLDADARGGAALSISHAIGAPILF 303

Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312
           +GVG+G +DL+PF  + F  +I G
Sbjct: 304 VGVGQGYDDLKPFDERWFVDLIFG 327


>gi|15668466|ref|NP_247264.1| signal recognition particle, receptor [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2500888|sp|Q57739|Y291_METJA RecName: Full=Probable signal recognition particle protein MJ0291
 gi|1591013|gb|AAB98276.1| signal recognition particle, receptor [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 409

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 147/257 (57%), Gaps = 16/257 (6%)

Query: 57  DIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWDF 107
           D+ + V +K++E    EL+ ++ + D +V+ +  +     +  ++ +  + + +    + 
Sbjct: 138 DVALEVVEKLIENIKNELVGRKISPDDNVEEITINAVKNAIKNILSQEKIDIEEIIKKNK 197

Query: 108 SH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  +P VI+ VG+NG GKTT I KL+ K+   G  V+LAAGDTFR+ AI+QL+  A    
Sbjct: 198 AEGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNVG 257

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +  + G+D+AA+ Y+A + A+A+ +DV++ DTAGR   N  LM  I K++RV K   
Sbjct: 258 VKVIKHKPGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNVNLMEEIKKVVRVTK--- 314

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  V+ V DA TG +A+ Q E F+      G+I+TK+D  A+GG  + I      P+
Sbjct: 315 ---PDLVIFVGDALTGNDAVYQAEEFNRAVNIDGIILTKVDADAKGGAALSIGYAIGKPI 371

Query: 287 YFLGVGEGINDLEPFVA 303
            +LGVG+   DL  F A
Sbjct: 372 LYLGVGQRYQDLIEFDA 388


>gi|328948953|ref|YP_004366290.1| signal recognition particle-docking protein FtsY [Treponema
           succinifaciens DSM 2489]
 gi|328449277|gb|AEB14993.1| signal recognition particle-docking protein FtsY [Treponema
           succinifaciens DSM 2489]
          Length = 291

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/262 (35%), Positives = 154/262 (58%), Gaps = 6/262 (2%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLT-KRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFN 104
           E+L D LI  D+G   A +IV+ L +  +  K  S + +  ++  ++ K L P+S +P N
Sbjct: 26  EDLTDALIEGDLGAKNAVEIVDNLESFCKKEKKFSPEEITVELKNILMKFLKPVSIEPSN 85

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
                + ++ +V+GVNGVGKTT + K++K  S+  + V++AA DTFR+AA+DQL +  ++
Sbjct: 86  G----KVNIFMVLGVNGVGKTTTVAKMAKLYSEKNVNVIMAAADTFRAAAVDQLSMHGEK 141

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                V  ++GSD +A+ ++A    +A    ++I DTAGRLHN   L+  + K+ R+   
Sbjct: 142 LKLRVVKHQMGSDPSAVVFDAADACKANNGGLVIADTAGRLHNKENLVNELKKIDRICAS 201

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                 +  + V+DATTGQNA+RQ E+F+   G   +++TK D TA+GG L+ I     I
Sbjct: 202 KADEGCYKKILVIDATTGQNAVRQAEVFNDAVGIDAVVLTKYDSTAKGGALVSIGKDLNI 261

Query: 285 PVYFLGVGEGINDLEPFVAKDF 306
           PV F+  GE   +++ F  K +
Sbjct: 262 PVLFVCTGEKYENIKSFDPKKY 283


>gi|326382862|ref|ZP_08204552.1| signal recognition particle-docking protein FtsY [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198452|gb|EGD55636.1| signal recognition particle-docking protein FtsY [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 488

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/281 (41%), Positives = 170/281 (60%), Gaps = 17/281 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVA----VAQKIVEELLTK--RYAKDV--SVQRVLY 86
           ++ +  LD+   EE+ED L+ +D+G A    V +++ EEL T   R A D   +++RVL 
Sbjct: 211 LLGAGDLDEDSWEEIEDTLVMADLGTAATSTVTERLREELATGKVRSADDARAALKRVL- 269

Query: 87  DVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
                + ++   L +       + RP V+LVVGVNGVGKTT  GKL++ +   G +V+L 
Sbjct: 270 -----VEQLRPDLDRSVKALPHADRPAVVLVVGVNGVGKTTTTGKLARVLVADGRRVLLG 324

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR+AA DQL+ W +R  A  V  + G+D A++A++A        VDV++IDTAGRL
Sbjct: 325 AADTFRAAAADQLQTWGERVGAGIVRGKEGADPASVAFDAVNTGIGDGVDVVLIDTAGRL 384

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H  S LM  +GK+ RV+++        VL VLDAT GQN L Q ++F  V   TG+++TK
Sbjct: 385 HTKSGLMDELGKVKRVVEK--KAVVDEVLLVLDATVGQNGLMQAKVFAEVVSLTGVVLTK 442

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +DGTA+GG +  I     +PV  +G+GEG +DL PF  + F
Sbjct: 443 LDGTAKGGIVFRIQEELGVPVKLVGLGEGADDLAPFEPEAF 483


>gi|281356109|ref|ZP_06242602.1| signal recognition particle protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281317478|gb|EFB01499.1| signal recognition particle protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 485

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 156/285 (54%), Gaps = 14/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSE 90
           ++   + D +RE +   L+ +D+ + V  + +E + T+   +DV  SV   Q+V+  V++
Sbjct: 22  LTESNIADAMRE-IRLALLDADVNLNVVAEFIEAVKTECVGQDVVKSVTPGQQVVKIVND 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + ++L       N  F+H+P  I++VG++G GKTT  GKL+ K+   G KV+L AGD +
Sbjct: 81  KLVELLGGGVSELN--FAHKPTAIMLVGLHGSGKTTTAGKLALKLKRDGKKVLLVAGDVY 138

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAIDQL+I     S          + AA+A  A +QA  +  DV+IIDTAGRL  +  
Sbjct: 139 RPAAIDQLEIIGKEISVPVHAERTSVNVAAIAVNAVEQAGRQGFDVVIIDTAGRLQIDET 198

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +   + +++R+ + +    P  VL V DA  GQ A+   E FH     TG I+TK+DG A
Sbjct: 199 M---VQELVRIRQAVQ---PDEVLLVADAALGQEAVSVAEHFHRALDLTGFILTKLDGDA 252

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      PV F+G+GE ++ LE F     +  I G  D
Sbjct: 253 RGGAALSIRKVTGCPVKFIGLGEKLDSLEVFYPDRMAGRILGMGD 297


>gi|167044181|gb|ABZ08863.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine crenarchaeote HF4000_APKG5E24]
          Length = 464

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 16/280 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMP 98
           D V  ELE  L+ SD+   V   I  +L TK     V+ +     V   ++E I  M   
Sbjct: 27  DDVLSELEISLLESDVATEVIDSIKSDLSTKLVGSRVNKKEIEDFVKKSLTENISSMFDD 86

Query: 99  ------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                 LS   +      P++IL VG+NG GKTT I K++  +    + V++AA DTFR+
Sbjct: 87  AGSVDILSNIKSKTDPQDPYLILFVGINGTGKTTTIAKIANLLQKNKISVVVAAADTFRA 146

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI+QL+   ++ +   +    GSD AA+A++A   A++ KVD ++ID+AGR+  N  LM
Sbjct: 147 GAIEQLREHINKLNLKLIAQNYGSDPAAVAHDALLYAKSHKVDCVLIDSAGRMQTNKNLM 206

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             I K+ +V+      +P   + V D+  G +A+ Q   FH      G I+TK D  ARG
Sbjct: 207 EQIAKISKVV------SPDLKIFVGDSLAGNDAVSQAREFHKHTTFDGAILTKGDADARG 260

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G  + IV   K PV ++G G+G +DLE F  + F   + G
Sbjct: 261 GAALSIVAVTKKPVIYVGTGQGYDDLELFSKEIFLETVFG 300


>gi|150400486|ref|YP_001324252.1| signal recognition particle-docking protein FtsY [Methanococcus
           aeolicus Nankai-3]
 gi|150013189|gb|ABR55640.1| signal recognition particle-docking protein FtsY [Methanococcus
           aeolicus Nankai-3]
          Length = 383

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 142/256 (55%), Gaps = 16/256 (6%)

Query: 56  SDIGVAVAQKIVEELLT-----KRYAKD----VSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +D+   V +K++E L       K  AKD    +++  +   + E++ +  + + K     
Sbjct: 105 ADVAYEVVEKLIESLRNQLIGIKISAKDDPEEITINALRNAIKEVLSQKEIDIYKLIEEK 164

Query: 107 FSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            S+  P VI+VVG+NG GKTT I KL+ K+ + G  V+LAAGDTFR+ AI+QL+  A   
Sbjct: 165 KSNGEPTVIVVVGINGTGKTTTISKLAYKLMNNGYSVVLAAGDTFRAGAIEQLEEHAKNI 224

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
            A  +  + GSD AA+ Y+A   A+A+ + V++ DTAGR   N  LMA I K++RV    
Sbjct: 225 GAKVIKHQKGSDGAAVIYDAINHAKARGISVVLADTAGRQTTNINLMAEIKKVVRV---- 280

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  V+ V D+  G +A+ Q E F+ +    G+I+TK D  A+GG  + I      P
Sbjct: 281 --SNPDLVVFVGDSLAGNDAITQAEEFNNMVNIDGVILTKTDADAKGGAALSIAHAIGKP 338

Query: 286 VYFLGVGEGINDLEPF 301
           + FLGVG+   DL  F
Sbjct: 339 ILFLGVGQRYEDLMEF 354


>gi|262184411|ref|ZP_06043832.1| signal recognition particle receptor [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 636

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 174/305 (57%), Gaps = 15/305 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           KL    + +   + +G+  I+S+  LDD   EE+ED LI +D+G     ++ + L  K  
Sbjct: 337 KLRGRLSRSQNAIGQGLMGILSAGDLDDDAWEEIEDTLIMADLGTKSTMQVTDSLRDKIA 396

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVI 128
            + VS +    +   ++ + L+ +  P   D S        +P VI+VVGVNG GKTT  
Sbjct: 397 ERGVSSE---AEARAMLREALIEVGHP-EMDRSIKAMPNEGKPAVIMVVGVNGTGKTTTT 452

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++ +   G  V+L A DTFR+AA DQL+ W  R  A  V  + G+D A++A++A   
Sbjct: 453 GKLARVLVSMGHNVLLGAADTFRAAAADQLETWGRRVGATTVRGKEGADPASVAFDAVAA 512

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL-KRLDPHAPHSVLQVLDATTGQNALR 247
              + VDV+++DTAGRLH +  LM  +GK+ RV+ K+ D      VL VLDAT GQN L 
Sbjct: 513 GVDQGVDVVLVDTAGRLHTSVDLMDQLGKVKRVVEKKTD---VDEVLLVLDATVGQNGLT 569

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F 
Sbjct: 570 QARIFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFV 629

Query: 308 AVITG 312
             + G
Sbjct: 630 DALLG 634


>gi|167044477|gb|ABZ09152.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine crenarchaeote HF4000_APKG6J21]
          Length = 498

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 146/280 (52%), Gaps = 16/280 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMP 98
           D V  ELE  L+ SD+   V   I  +L TK     V+ +     V   ++E I  M   
Sbjct: 27  DDVLSELEISLLESDVATEVIDSIKSDLSTKLVGSRVNKKEIEDFVKKSLTENISSMFDD 86

Query: 99  ------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                 LS   +      P++IL VG+NG GKTT I K++  +    + V++AA DTFR+
Sbjct: 87  AGSVDILSNIKSKTDPQDPYLILFVGINGTGKTTTIAKIANLLQKNKISVVVAAADTFRA 146

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI+QL+   ++ +   +    GSD AA+A++A   A++ KVD ++ID+AGR+  N  LM
Sbjct: 147 GAIEQLREHINKLNLKLIAQNYGSDPAAVAHDALLYAKSHKVDCVLIDSAGRMQTNKNLM 206

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             I K+ +V+      +P   + V D+  G +A+ Q   FH      G I+TK D  ARG
Sbjct: 207 EQIAKISKVV------SPDLKIFVGDSLAGNDAVSQAREFHKHTTFDGAILTKGDADARG 260

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G  + IV   K PV ++G G+G +DLE F  + F   + G
Sbjct: 261 GAALSIVAVTKKPVIYVGTGQGYDDLELFSKEIFLETVFG 300


>gi|110669293|ref|YP_659104.1| signal recognition particle receptor SRalpha [Haloquadratum walsbyi
           DSM 16790]
 gi|109627040|emb|CAJ53516.1| signal recognition particle receptor SRalpha [Haloquadratum walsbyi
           DSM 16790]
          Length = 413

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/264 (34%), Positives = 141/264 (53%), Gaps = 13/264 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +LE  L+ SD+ + VA++I+  + +K   +    V      V E +   L  +     +D
Sbjct: 143 QLEMALLESDVEMQVAEEILGTIRSKMLGETRAQVNTTAALVEEALSDALYEVISVGQYD 202

Query: 107 FSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           F  R      P  I+  GVNGVGKTT I KL + +   GL V++A GDT+R+ A +Q++ 
Sbjct: 203 FDSRVESADSPVTIVFTGVNGVGKTTSIAKLVQYLESRGLSVVMANGDTYRAGANEQIRE 262

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A       +  E G D AA+ Y+A + A+A  +DV++ DTAGRLH ++ LMA + K+ R
Sbjct: 263 HAKTLDTKLIAHEQGGDPAAVLYDAVEYAEANDIDVVLGDTAGRLHTSNDLMAQLEKIDR 322

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V+       P   L V +A  GQ+A+ + + F+  A   G ++TK D  + GG  I I  
Sbjct: 323 VVN------PDMTLFVDEAVAGQDAVERAKQFNEAAEIDGTVLTKADADSNGGAAISIAY 376

Query: 281 THKIPVYFLGVGEGINDLEPFVAK 304
               P+ FLGVG+  +D+E F  K
Sbjct: 377 VTGKPILFLGVGQEYDDIERFDPK 400


>gi|227833422|ref|YP_002835129.1| signal recognition particle receptor [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454438|gb|ACP33191.1| signal recognition particle receptor [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 658

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 174/305 (57%), Gaps = 15/305 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           KL    + +   + +G+  I+S+  LDD   EE+ED LI +D+G     ++ + L  K  
Sbjct: 359 KLRGRLSRSQNAIGQGLMGILSAGDLDDDAWEEIEDTLIMADLGTKSTMQVTDSLRDKIA 418

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVI 128
            + VS +    +   ++ + L+ +  P   D S        +P VI+VVGVNG GKTT  
Sbjct: 419 ERGVSSE---AEARAMLREALIEVGHP-EMDRSIKAMPNEGKPAVIMVVGVNGTGKTTTT 474

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++ +   G  V+L A DTFR+AA DQL+ W  R  A  V  + G+D A++A++A   
Sbjct: 475 GKLARVLVSMGHNVLLGAADTFRAAAADQLETWGRRVGATTVRGKEGADPASVAFDAVAA 534

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL-KRLDPHAPHSVLQVLDATTGQNALR 247
              + VDV+++DTAGRLH +  LM  +GK+ RV+ K+ D      VL VLDAT GQN L 
Sbjct: 535 GVDQGVDVVLVDTAGRLHTSVDLMDQLGKVKRVVEKKTD---VDEVLLVLDATVGQNGLT 591

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F 
Sbjct: 592 QARIFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFV 651

Query: 308 AVITG 312
             + G
Sbjct: 652 DALLG 656


>gi|68161019|gb|AAY86941.1| lr0114 [Lactobacillus reuteri]
          Length = 398

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/198 (43%), Positives = 118/198 (59%), Gaps = 14/198 (7%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ--RVLYDVSELIHKMLMPL----SKPFNW 105
           +LI SD+G  +A K+ +EL      ++V +Q  +   DVS +I + ++ L     +  N 
Sbjct: 206 MLIESDVGYDMAMKLSDELR-----EEVKLQNAKSKQDVSNVIIEKMVELYDEAGQDENP 260

Query: 106 DFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           D +     P VI+ VGVNG GKTT IGK++      G KV+LAA DTFR+ A +QL +WA
Sbjct: 261 DLTMTKEGPTVIMFVGVNGAGKTTTIGKMAALFKKQGKKVLLAAADTFRAGATEQLDVWA 320

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            R   D V      D AA+ ++A K+A+ +  D+L +DTAGRL N   LM  +GKM R+L
Sbjct: 321 KRDGVDIVTGPENGDPAAVVFDAVKRAKDENYDILFVDTAGRLQNKVNLMNELGKMKRIL 380

Query: 223 KRLDPHAPHSVLQVLDAT 240
            R  PHAPH VL VLDAT
Sbjct: 381 TREIPHAPHEVLLVLDAT 398


>gi|324997926|ref|ZP_08119038.1| signal recognition particle GTPase [Pseudonocardia sp. P1]
          Length = 309

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/269 (40%), Positives = 159/269 (59%), Gaps = 17/269 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E++E  L+++D+G  + Q++ E+L  +  A+ V   R    V + +H +L          
Sbjct: 43  EDVEATLLQADLGPEMTQEVTEQLREQLAARGV---RSAEQVRQTLHDVLTGALDTGQDR 99

Query: 107 FSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
             H      RP V+LVVGVNG GKTT  GKL++ +   G +V L A DTFR+AA +QL  
Sbjct: 100 SVHALPHEGRPAVLLVVGVNGTGKTTTTGKLARVLVAGGHRVTLGAADTFRAAAAEQLVT 159

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           W +R+ A  V    GSD A++A++A K+     VD +++DTAGRLH  + LM  +GK+ R
Sbjct: 160 WGERSGAGVVRGPEGSDPASVAFDAVKRGTDDAVDAVLLDTAGRLHTKTGLMDELGKVKR 219

Query: 221 VLK---RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           V++   R+D      VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG +  
Sbjct: 220 VVEKQARVD-----EVLLVLDATTGQNGLTQARVFGEVVDVTGIVLTKLDGTAKGGIVFR 274

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +     +PV  +G+GEG +DL PF  K F
Sbjct: 275 VQRELGVPVKLVGLGEGPDDLAPFEPKAF 303


>gi|213964646|ref|ZP_03392846.1| signal recognition particle GTPase [Corynebacterium amycolatum
           SK46]
 gi|213952839|gb|EEB64221.1| signal recognition particle GTPase [Corynebacterium amycolatum
           SK46]
          Length = 515

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 112/285 (39%), Positives = 164/285 (57%), Gaps = 13/285 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           I+ +  LD+   EE+ED+L+ +D+G A  Q++V++L  +  ++ VS +        L+ +
Sbjct: 234 ILGAGDLDEDAWEEVEDILVMADLGAAATQRVVDKLRERIASQKVSTEE---QARALLRE 290

Query: 95  MLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           +L+   KP   D S R       P VILVVGVNG GKTT  GKL++ +   G +V+L A 
Sbjct: 291 VLIEECKP-EMDRSIRALPHEGKPAVILVVGVNGTGKTTTTGKLARVLVAGGHRVVLGAA 349

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA DQL+ W  R  A+ V    G+D A++A+EA         DV++IDTAGRLH 
Sbjct: 350 DTFRAAAADQLETWGRRVGAETVRGAEGADPASIAFEAVAHGIESGADVVLIDTAGRLHT 409

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
              LM  + K+ RV+++        V+ VLDAT GQN L Q   F  V   TG+ +TK+D
Sbjct: 410 KVGLMDQLDKIKRVVEK--KAQVDEVILVLDATVGQNGLLQARTFRDVVDITGVALTKLD 467

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           GTA+GG +  +     +PV  +G+GEG + L PF  + F   + G
Sbjct: 468 GTAKGGIVFQVQNELGVPVKLVGLGEGADHLAPFEPESFVDALLG 512


>gi|258653316|ref|YP_003202472.1| signal recognition particle-docking protein FtsY [Nakamurella
           multipartita DSM 44233]
 gi|258556541|gb|ACV79483.1| signal recognition particle-docking protein FtsY [Nakamurella
           multipartita DSM 44233]
          Length = 321

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/280 (40%), Positives = 166/280 (59%), Gaps = 17/280 (6%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYD-VSELI 92
           DD   EE+ED L+ +D+G A A +I E+L     A  V+        ++RVL + V   +
Sbjct: 49  DDDSWEEVEDTLLMADLGAAAAAEITEKLRGAVAAHGVTDAASARALLRRVLIEAVDPTM 108

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            + +  L          RP V+L+VGVNG GKTT  GKL++ +   G  V+L A DTFR+
Sbjct: 109 DRAVRALP------HDGRPSVLLIVGVNGTGKTTTTGKLARVLVADGRHVVLGAADTFRA 162

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA DQL+ W +R  A  V ++ G+D A++A++A K+  A   D ++IDTAGRLH  + LM
Sbjct: 163 AAADQLQTWGERAGAAVVRADAGTDPASVAFDAVKRGIADGADAVLIDTAGRLHTKTGLM 222

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +GK+ RV+++        VL VLDATTGQN L Q  +F  V   +G+++TK+DGTA+G
Sbjct: 223 DELGKVKRVVEK--QAEVDEVLLVLDATTGQNGLVQATVFADVVDISGIVLTKLDGTAKG 280

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G ++ +  T  +PV  +G+GEG +DL PF    F   + G
Sbjct: 281 GIVVAVQRTLGVPVKLVGLGEGPDDLAPFEPAAFVDALLG 320


>gi|33152972|ref|NP_874325.1| signal recognition particle protein [Haemophilus ducreyi 35000HP]
 gi|33149197|gb|AAP96714.1| signal recognition particle protein [Haemophilus ducreyi 35000HP]
          Length = 450

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 162/306 (52%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++  K  A
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDF---SHRPHVILVVGVNGVGKTTVIGK 130
             V V + L    E +  +   L       N +    S  P VIL+ G+ G GKTT +GK
Sbjct: 60  LGVEVNKSLTPGQEFLKIVQSELESAMGEANEELNLASQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K + +    KV++ + D +R AAI QL+  A+  + DF  +E       +A EA K A
Sbjct: 120 LAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAESLNVDFFPTETNQQPTVIAQEALKYA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLI+DTAGRLH ++ +MA I ++ ++L       P   L  +DA TGQ+A    
Sbjct: 180 KLNFFDVLIVDTAGRLHIDTDMMAEIQQLHQLLN------PVETLFTVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|289548587|ref|YP_003473575.1| signal recognition particle protein [Thermocrinis albus DSM 14484]
 gi|289182204|gb|ADC89448.1| signal recognition particle protein [Thermocrinis albus DSM 14484]
          Length = 437

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 159/304 (52%), Gaps = 20/304 (6%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELLT 72
           LT  F+    +L+   T  ++ ++L+D +R+ +   L+ +D+   V +    +I E  LT
Sbjct: 5   LTDRFSKALERLRN--TRKLTEKQLNDILRD-IRMALLEADVDYDVVKTFLKRIRERALT 61

Query: 73  KRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +    ++S  + VL  V E + K+L    +        +   +L VG+ G GKTT +GKL
Sbjct: 62  EDLKNNLSPAESVLLTVYEELVKILGETKEDL------KKGTVLFVGLQGTGKTTTVGKL 115

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G KV L + D  R AAI QL+  A+R    +  +E   D   +A  A K+A+ 
Sbjct: 116 AYYLKGKGFKVALTSTDVRRPAAILQLQRLAERVEVPYYSAEGEEDPVKIAQIAVKRAKD 175

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VD L++DTAGRLH +  LM  + ++   +       P  +L V DA  GQ ALR  + 
Sbjct: 176 EGVDYLLLDTAGRLHIDEELMEELRRIKETVN------PSEILYVADAMQGQEALRAAKT 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG+++TKMDG ARGG  + +     +P+ F+GVGE + D+EPF     +  I 
Sbjct: 230 FHETVGLTGVVLTKMDGDARGGVALSVREALGVPIKFMGVGEKLEDIEPFYPDRVAQRIL 289

Query: 312 GCLD 315
           G  D
Sbjct: 290 GLGD 293


>gi|225022015|ref|ZP_03711207.1| hypothetical protein CORMATOL_02047 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945212|gb|EEG26421.1| hypothetical protein CORMATOL_02047 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 743

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/287 (38%), Positives = 169/287 (58%), Gaps = 17/287 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           ++S+  LDD   E++E  LI++D+GV +   +V+EL      + VS +    +   ++ +
Sbjct: 465 MLSAGDLDDDAWEDIETQLIQADLGVKITTNVVDELREMIAERGVSSE---DEARAMLRE 521

Query: 95  MLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            L+   KP          ++ +P V+LVVGVNG GKTT  GKL++ +   G KV+L A D
Sbjct: 522 CLIAACKPELDRSIKAMPYNGKPAVVLVVGVNGTGKTTTTGKLARVLVSMGHKVLLGAAD 581

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+AA DQL+ W  R  A  V     +D A++A++A  +      DV++IDTAGRLHN+
Sbjct: 582 TFRAAAADQLEAWGRRVGATTVRGAEAADPASVAFDAVSKGVETHADVVLIDTAGRLHNS 641

Query: 209 SILMAGIGKMIRVLKR---LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           + LM  + K+ RV+++   +D      VL VLDATTGQN L Q + F  V   TG+++TK
Sbjct: 642 TNLMDQLRKVKRVVEKKAVVD-----EVLLVLDATTGQNGLVQAKTFGDVVNITGVVLTK 696

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 697 LDGTAKGGIVFQVQEDLGVPVKLVGLGEGADDLAPFEVEGFVDALLG 743


>gi|146304394|ref|YP_001191710.1| signal recognition particle-docking protein FtsY [Metallosphaera
           sedula DSM 5348]
 gi|145702644|gb|ABP95786.1| signal recognition particle-docking protein FtsY [Metallosphaera
           sedula DSM 5348]
          Length = 373

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 151/285 (52%), Gaps = 31/285 (10%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
           +E I+D+I          EEL   L+  D+ + V  KI+E+L      + VS +    ++
Sbjct: 97  EEDISDLI----------EELRIELLEDDVSLEVTDKILEDLKNTLVGQKVSRRE---NI 143

Query: 89  SELIHKMLMP-----LSKPFNW-------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            ELI + L       L K +           S +P+VI+  GVNGVGKTT I K +  + 
Sbjct: 144 EELIQESLKKSLREILRKNYRERDMIETIKSSKKPYVIVFFGVNGVGKTTTIAKFAMLLR 203

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             GL V++AA DTFR+AA +QL   A +     V  + G D A++A++A + A+++ +DV
Sbjct: 204 KNGLSVIIAASDTFRAAAQEQLAYHATKLEVPLVKGKYGGDPASVAFDAIQSAKSRGIDV 263

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +++DTAGR+H +  L   + +++RV K      P   + VLD+  G +AL+Q E F    
Sbjct: 264 VLVDTAGRMHTDKDLTEELKRVVRVAK------PDLKILVLDSLAGNDALQQAEYFEKNV 317

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G   +I+TK+D  A+GG  + +      PV +LG+G+    L  F
Sbjct: 318 GYDAVILTKVDADAKGGVALSLAYKLGKPVIYLGMGQDYESLIKF 362


>gi|212223740|ref|YP_002306976.1| signal recognition particle GTPase [Thermococcus onnurineus NA1]
 gi|212008697|gb|ACJ16079.1| signal recognition particle GTPase [Thermococcus onnurineus NA1]
          Length = 301

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 118/205 (57%), Gaps = 6/205 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
             +P VI  VG NG GKTT I KL+  +   GL V++AA DTFR+ AI+Q++  A R   
Sbjct: 101 EEKPFVIAFVGFNGSGKTTTIAKLAHWLKKNGLSVVIAASDTFRAGAIEQVEEHAKRVGV 160

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +    G+D AA+AY+A   A+A+ +DV++IDTAGR   N  LM  + K++RV K    
Sbjct: 161 KVIKHSYGADPAAVAYDAIGHAKARGIDVVLIDTAGRNELNRNLMDEMKKIVRVTK---- 216

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  V+ V D+  G   + Q + F+      G+I+TK+D  ARGG  + I      P+ 
Sbjct: 217 --PDLVIFVGDSLAGNAVVEQAKQFNEAVRIDGVILTKLDADARGGAALSISHAIGAPIL 274

Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312
           F+GVG+G +DL+PF  K F   I G
Sbjct: 275 FVGVGQGYDDLKPFDEKWFVERIFG 299


>gi|269955961|ref|YP_003325750.1| signal recognition particle-docking protein FtsY [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304642|gb|ACZ30192.1| signal recognition particle-docking protein FtsY [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 388

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 113/273 (41%), Positives = 172/273 (63%), Gaps = 11/273 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKP 102
           +ELE+ L+ +D+G   A +++E L T+   + V    +V+ +L D  EL+  +   L + 
Sbjct: 119 DELEETLLLADVGAGPAGELIEALRTRVRVEGVGDPAAVRAMLRD--ELVTLVGPDLDRT 176

Query: 103 FNWDFSH--RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
            +   +    P V+LVVGVNG GKTT +GKL++ +   G +V+L A DTFR+AA DQL+ 
Sbjct: 177 LHTQGAEPGTPGVVLVVGVNGTGKTTTVGKLARVLVADGRQVVLGAADTFRAAAADQLQT 236

Query: 161 WADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           W  R     V ++  G+D AA+A++A ++ ++   DV+++DTAGRL N + LM  +GK+ 
Sbjct: 237 WGSRVGVPTVRADRDGADPAAVAFDAVREGRSDGADVVLVDTAGRLQNKAGLMDELGKIT 296

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV+ R    A   VL VLDATTGQN L+Q  +F  VAG TG+++TK+DGTA+GG ++ + 
Sbjct: 297 RVITRE--AALTEVLLVLDATTGQNGLQQARVFGEVAGVTGIVLTKLDGTAKGGIVVAVQ 354

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
               +PV  +G+GEG +DL PF A+ F   I G
Sbjct: 355 RELGVPVKLVGLGEGPDDLAPFDAEQFVDGILG 387


>gi|307594172|ref|YP_003900489.1| signal recognition particle-docking protein FtsY [Vulcanisaeta
           distributa DSM 14429]
 gi|307549373|gb|ADN49438.1| signal recognition particle-docking protein FtsY [Vulcanisaeta
           distributa DSM 14429]
          Length = 305

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 160/305 (52%), Gaps = 23/305 (7%)

Query: 16  KLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL   F S +  +   IT   +S  +L++ +R+EL   L+ SD+ V VA  I   ++   
Sbjct: 4   KLKNAFKSLTNTIVNSITTTELSEDKLNE-IRDELFMQLVESDVAVDVADAISNAIVN-- 60

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPF----NWDFS---------HRPHVILVVGVNG 121
           Y + + V R     S + + ++  +SK F    + DF           +P V+L +G NG
Sbjct: 61  YLRGLKVPRFGDKESVIKNGIIDIMSKLFSDIPDVDFMSEVIRLLQMKKPVVLLFLGPNG 120

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT I K++ ++   G   + AA DT+R+ AI+QL+  A +     +    GSD AA+
Sbjct: 121 YGKTTTIAKITHQLMKRGYTAVWAAADTYRAGAIEQLEGHATKLGVRVIKHGYGSDPAAV 180

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A   A+ + +D ++IDTAGR+H +  LM  + K+ RV +      P   + + DA  
Sbjct: 181 AYDAINHAKVRGIDYVMIDTAGRMHTDINLMNELSKIQRVSR------PDLSIFIADALL 234

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G  AL   + +       GLI+TK+D   +GG ++  +   K P+YFLGVG+G +DL PF
Sbjct: 235 GNEALDIAKYYSKYVKIDGLIVTKVDAYPKGGAILTFLYELKKPIYFLGVGQGYDDLRPF 294

Query: 302 VAKDF 306
              +F
Sbjct: 295 SKAEF 299


>gi|206896211|ref|YP_002246863.1| cell division protein FtsY [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738828|gb|ACI17906.1| cell division protein FtsY [Coprothermobacter proteolyticus DSM
           5265]
          Length = 289

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 135/255 (52%), Gaps = 15/255 (5%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN- 104
            EEL   LI +D  +  AQ ++E++  K    DV            I ++L+  + PF  
Sbjct: 28  EEELLSKLIMADFSLKKAQALLEQIKEKGNNVDV------------IREVLLSEAPPFEP 75

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              +  P V  ++GVNGVGKTT + KL+   +  G  V++   DTFR+AA DQL    +R
Sbjct: 76  LRDTSVPSVFFIIGVNGVGKTTTVAKLAHMYAKQGKNVVVVGADTFRAAAQDQLSTLVNR 135

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
               +V  E GSD+ ++ Y+A    +  +  V ++DTAGR+H +  L+  + K+I+V K+
Sbjct: 136 MPVTYVGGERGSDSGSILYKAL--LENPQASVFLVDTAGRIHTSRALIDELSKLIKVGKK 193

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  VL VLD T G    RQ   F      TGL++TKMD TA+GG +  I    KI
Sbjct: 194 FSEEFPQEVLLVLDGTQGIQGYRQAMSFVQGTPITGLVLTKMDSTAKGGMIFSIWDELKI 253

Query: 285 PVYFLGVGEGINDLE 299
           PV  +  G+ ++D++
Sbjct: 254 PVKLVCFGQQLDDID 268


>gi|258511333|ref|YP_003184767.1| signal recognition particle protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478059|gb|ACV58378.1| signal recognition particle protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 479

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 151/283 (53%), Gaps = 20/283 (7%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELI 92
           +D+ +RE +   L+ +D+ V V +  V+ +  +   +DV         V +++Y+  EL 
Sbjct: 27  VDEAMRE-IRRALLAADVNVKVVRDFVDRVRARAVGQDVLKSLTPGQQVVKIVYE--ELT 83

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
              LM  S+         P V+++VG+ G GKTT   KL+        + +L A D +R 
Sbjct: 84  E--LMGGSQARIRMAPKPPTVVMLVGLQGAGKTTTAAKLALAFHQQNHRPLLVAADVYRP 141

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA+DQLK+   +     V S  G+ A  +A    + A+ +  DV+I+DTAGRLH +  LM
Sbjct: 142 AAVDQLKVLGAQIDVP-VFSLDGAGAVEIAEAGLRDAERRGADVVIVDTAGRLHIDDALM 200

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
           A +  M ++L+      PH +L V+DA TGQ+A+   E FH     TG+I+TK+DG ARG
Sbjct: 201 AELESMKKILE------PHEILLVVDAMTGQDAVHVAEAFHQRLEVTGVILTKLDGDARG 254

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F+G+GE I  LEPF  +  ++ I G  D
Sbjct: 255 GAALTVRAATGCPIKFVGMGEKIEPLEPFHPERMASRILGMGD 297


>gi|327311560|ref|YP_004338457.1| signal recognition particle-docking protein FtsY [Thermoproteus
           uzoniensis 768-20]
 gi|326948039|gb|AEA13145.1| signal recognition particle-docking protein FtsY [Thermoproteus
           uzoniensis 768-20]
          Length = 311

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 151/289 (52%), Gaps = 32/289 (11%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTK-------RYA-KDVSVQRVLYDVSELIH 93
           V E  EDL   L+ SD+ V VA  ++  L  K       R+  ++ +V+R +YD      
Sbjct: 30  VSELAEDLYLDLVESDVAVDVADALISALKAKLVGAKVPRFGDREAAVRRAVYDA----- 84

Query: 94  KMLMPLSKPFNWDFSH---------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
            +L  +    + DF           RP V++ +G NG GKTT + K++      GL+ +L
Sbjct: 85  -LLSLVGDVQDADFESAVIEAAEQARPVVVMFLGPNGYGKTTTLAKIAYLFKSRGLQSVL 143

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+ A +QL+    R     +  + GSD A++AY+A + A++K + +++IDTAGR
Sbjct: 144 AAADTFRAGAREQLEEHGKRLGLRVIGGKYGSDPASVAYDAVQHARSKGIPLVLIDTAGR 203

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           +H +  LM  + K+ RV++      PH  + V DA  G  AL     +       G++ T
Sbjct: 204 MHTDKNLMDELAKIQRVVE------PHFSVFVFDAQLGNEALEIARYYSKHVSIDGMVAT 257

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           K+D   +GG ++  + T K P+YFLGVG+   DL  F  +++ A + G 
Sbjct: 258 KVDSYPKGGSILTFLYTFKKPIYFLGVGQRYEDLVKFKKEEYIAQLIGL 306


>gi|284174532|ref|ZP_06388501.1| signal recognition particle receptor protein [Sulfolobus
           solfataricus 98/2]
 gi|13813490|gb|AAK40678.1| Signal recognition particle protein (docking protein) (srpR)
           [Sulfolobus solfataricus P2]
          Length = 266

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 154/268 (57%), Gaps = 26/268 (9%)

Query: 53  LIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQRVLYD-----VSELIHK-----MLMP 98
           L+ SD+   V +KI+E+L    + K+  +   ++R++ D     ++E+I K     +L  
Sbjct: 5   LLESDVSFEVTEKILEDLKENIIGKKVKRSDDLERIVKDSLKKSITEIITKNNAINVLEE 64

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           + K      S +P++I+  G+NGVGKTT I K +  +   GL  +++A DTFR+AA +QL
Sbjct: 65  IKK------SPKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSCIISASDTFRAAAQEQL 118

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++ +       +    G D A++A++A + A+++ +DV++IDTAGR+H ++ L+  + ++
Sbjct: 119 EVHSRNLEIPLIKGRYGGDPASVAFDAIRAAKSRGIDVVLIDTAGRMHTDTDLVNELKRV 178

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           + + K      P+  + VLD+  G +AL Q + F    G   +I+TK+D   +GG ++ +
Sbjct: 179 VNIAK------PNLKILVLDSLGGNDALEQAKYFENNVGFDLVILTKVDADVKGGVILSL 232

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                 PV +LG+G+  +DL PF A+ F
Sbjct: 233 AYELNKPVGYLGIGQAYDDLIPFNAEWF 260


>gi|305681342|ref|ZP_07404149.1| signal recognition particle-docking protein FtsY [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659547|gb|EFM49047.1| signal recognition particle-docking protein FtsY [Corynebacterium
           matruchotii ATCC 14266]
          Length = 755

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 169/287 (58%), Gaps = 17/287 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           ++S+  LDD   E++E  LI++D+GV +   +V+EL      + VS +    +   ++ +
Sbjct: 477 MLSAGDLDDDAWEDIETQLIQADLGVKITTNVVDELREMIAERGVSSE---DEARAMLRE 533

Query: 95  MLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            L+   KP          ++ +P V+L+VGVNG GKTT  GKL++ +   G KV+L A D
Sbjct: 534 CLIAACKPELDRSIKAMPYNGKPAVVLIVGVNGTGKTTTTGKLARVLVSMGHKVLLGAAD 593

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+AA DQL+ W  R  A  V     +D A++A++A  +      DV++IDTAGRLHN+
Sbjct: 594 TFRAAAADQLEAWGRRVGATTVRGAEAADPASVAFDAVSKGVETHADVVLIDTAGRLHNS 653

Query: 209 SILMAGIGKMIRVLKR---LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           + LM  + K+ RV+++   +D      VL VLDATTGQN L Q + F  V   TG+++TK
Sbjct: 654 TNLMDQLRKVKRVVEKKAVVD-----EVLLVLDATTGQNGLVQAKTFGDVVNITGVVLTK 708

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 709 LDGTAKGGIVFQVQEDLGVPVKLVGLGEGADDLAPFEVEGFVDALLG 755


>gi|227503347|ref|ZP_03933396.1| cell division protein FtsY [Corynebacterium accolens ATCC 49725]
 gi|227075850|gb|EEI13813.1| cell division protein FtsY [Corynebacterium accolens ATCC 49725]
          Length = 712

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/290 (37%), Positives = 169/290 (58%), Gaps = 13/290 (4%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           +G+  I+S+  LD+   EE+ED LI +D+G     K+ + L  K   + VS +    +  
Sbjct: 427 QGLMGILSAGDLDEDAWEEIEDTLIMADLGTKSTMKVTDSLRDKIAERGVSSEE---EAR 483

Query: 90  ELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
            ++ + L+    P   D S R       P +++VVGVNG GKTT  GKL++ +      V
Sbjct: 484 AMLRECLIEACHP-EMDRSIRAMPNDGKPAIVMVVGVNGTGKTTTTGKLARVLVSMDHSV 542

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA DQL+ W  R  A+ V  + G+D A++A++A      ++VDV+++DTA
Sbjct: 543 LLGAADTFRAAAADQLETWGRRVGAETVRGKEGADPASVAFDAVATGVEQQVDVVLVDTA 602

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH ++ LM  +GK+ RV+++        VL VLDAT GQN L Q  +F  V   +G++
Sbjct: 603 GRLHTSTDLMDQLGKVKRVVEKK--TEVDEVLLVLDATVGQNGLAQARIFREVVDISGVV 660

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 661 LTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 710


>gi|254172921|ref|ZP_04879595.1| signal recognition 54 kDa protein [Thermococcus sp. AM4]
 gi|214033077|gb|EEB73905.1| signal recognition 54 kDa protein [Thermococcus sp. AM4]
          Length = 448

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 149/283 (52%), Gaps = 24/283 (8%)

Query: 45  VREELEDL---LIRSDIGV----AVAQKIVEELLTKRYAKDVS----VQRVLYD-VSELI 92
           +RE + D+   LI+SD+ V     + ++I E  L ++    VS    V +++Y+ +++ +
Sbjct: 28  IREVVRDIQRALIQSDVNVRLVLQLTKRIQERALNEKPPAGVSPREHVVKIVYEELTKFL 87

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            K  +PL      +   +P ++L VG+ G GKTT I KL++ +   G KV L   DT+R 
Sbjct: 88  GKEAVPL------EIREKPTILLTVGIQGSGKTTTIAKLARHLQKRGYKVGLVCTDTWRP 141

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A  QLK   +  + +        DA  LA E  +  + K VDV+I+DTAGR    S L+
Sbjct: 142 GAYYQLKQLVEPYNIEVFGDPNEKDAIKLAREGVEHFREKGVDVIIVDTAGRHKEESGLI 201

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + ++   +K      PH V+ V+D T GQ A  Q   F        +I+TK+DG+A+G
Sbjct: 202 EEMKQISEAIK------PHEVILVIDGTIGQQAYHQALAFKEATPIGSIIVTKLDGSAKG 255

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG +  V     P+ F+GVGE I+DLEPF  K F + + G  D
Sbjct: 256 GGALSAVAATGAPIKFIGVGEKIDDLEPFDPKRFVSRLLGLGD 298


>gi|60623873|ref|NP_377324.2| signal recognition particle receptor protein [Sulfolobus tokodaii
           str. 7]
          Length = 378

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/272 (32%), Positives = 150/272 (55%), Gaps = 21/272 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSK 101
           EEL   L+ SD+   V +KI+++L      K V+      D+ EL+   L       L+K
Sbjct: 109 EELRYQLLESDVSYEVTEKILDDLKNAIIGKKVTRSE---DLEELVTNSLKKSIEEILTK 165

Query: 102 PFNWDF-------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
               D        + +P+VI+  GVNGVGKTT I K++  +    +  +++A DTFR+AA
Sbjct: 166 NQRIDLIEEIRKRNKKPYVIVFFGVNGVGKTTTIAKVAYLLKKNKISCIISASDTFRAAA 225

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +QL   A +     V  + G+D A++A++A   A+++ +DV++IDTAGR+H +  L++ 
Sbjct: 226 QEQLAYHASKLEIPIVKGKYGADPASVAFDAINSAKSRNIDVVLIDTAGRMHIDEDLVSE 285

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + +++++ K      P   + VLD+  G +AL Q + F    G   +I+TK+D  A+GG 
Sbjct: 286 LKRIVKIAK------PDLRILVLDSLAGNDALEQAKYFENNVGYDAVILTKVDADAKGGV 339

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           ++ +      PV +LGVG+  + L PF A+ F
Sbjct: 340 ILSLAYELNKPVIYLGVGQDYDSLIPFDAEWF 371


>gi|304313969|ref|YP_003849116.1| signal recognition particle protein [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587428|gb|ADL57803.1| predicted signal recognition particle protein [Methanothermobacter
           marburgensis str. Marburg]
          Length = 359

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/272 (37%), Positives = 152/272 (55%), Gaps = 13/272 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS-ELIHK 94
           IS + ++D V  ELE  L+ SD+ + VA++IVEEL  +   K V     + D + E + K
Sbjct: 84  ISEKDVED-VLWELEMALLESDVALEVAERIVEELREELVGKKVKRSTEISDYTREALKK 142

Query: 95  MLMPL-----SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            +M +      K        +P VI+ VG+NG GKTT I K+++     GL+ ++AA DT
Sbjct: 143 AVMDVLSVDGVKIRELAEKRKPLVIMFVGINGTGKTTTIAKVARYFMKMGLEPVMAAADT 202

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ AI+Q+   AD+     +    G+D AA+A++A   A+A+  DV++IDTAGR+  N 
Sbjct: 203 FRAGAIEQIHEHADKLGVKIISHRKGADPAAVAFDAVSHAKAQGKDVVLIDTAGRMQTNV 262

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + K+ RV+K      P  +L V DA TG +A+ Q   F    G   +I+TK D  
Sbjct: 263 NLMDEMAKIKRVVK------PDLILFVGDALTGNDAIEQATKFDEAVGIDAVILTKADAD 316

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           ARGG  + I    + P+ FLG G+G +D+  F
Sbjct: 317 ARGGAALSIGYMIRKPIIFLGTGQGYDDIMEF 348


>gi|57640588|ref|YP_183066.1| signal recognition particle GTPase [Thermococcus kodakarensis KOD1]
 gi|57158912|dbj|BAD84842.1| signal recognition particle GTPase [Thermococcus kodakarensis KOD1]
          Length = 342

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 140/257 (54%), Gaps = 11/257 (4%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK----PFNWDFSHRPHVIL 115
           A+ +KI E+L+ ++     +  +++ + + E I ++L P  K            +P VI 
Sbjct: 90  ALREKIKEKLVGRKVRIGTNKGKIIEEALKEAILEILTPEKKIDLLQMIKSKEDKPFVIA 149

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VG NG GKTT I KL+  +   G  V++AA DTFR+ AI+QL+  A R     +  + G
Sbjct: 150 FVGFNGSGKTTTIAKLAHWLKKNGFSVVIAASDTFRAGAIEQLEEHAKRVGVKVIKHDYG 209

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D AA+AY+A + A+A+ +DV++IDTAGR   N  LM  + K+ RV K      P  V+ 
Sbjct: 210 ADPAAVAYDAIQHAKARGIDVVLIDTAGRNELNRNLMDEMKKIARVTK------PDLVIF 263

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V D+  G   + Q + F+      G+I+TK+D  ARGG  + I      P+ F+GVG+G 
Sbjct: 264 VGDSLGGNAVVEQAKQFNEAVRIDGVILTKLDADARGGAALSISHAIGAPILFVGVGQGY 323

Query: 296 NDLEPFVAKDFSAVITG 312
            DL PF  K F   I G
Sbjct: 324 EDLRPFDEKWFVERIFG 340


>gi|319790268|ref|YP_004151901.1| signal recognition particle protein [Thermovibrio ammonificans
           HB-1]
 gi|317114770|gb|ADU97260.1| signal recognition particle protein [Thermovibrio ammonificans
           HB-1]
          Length = 448

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 149/289 (51%), Gaps = 22/289 (7%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           I    L+ G+RE ++  L+ +D+   V  K + ++  K    +V         + +++YD
Sbjct: 22  IDQETLNKGLRE-IKLALLEADVNYKVVSKFINDIKEKALGAEVVKGVNPAQQLVKIVYD 80

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             EL+  +    +K    +   +P VIL++G+ G GKTT   KL+  +   G KV+L + 
Sbjct: 81  --ELVEALGGEGAK---LELKSKPAVILLIGLQGSGKTTTAAKLANYLKKQGKKVLLTSA 135

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D +R AA+ QLK   D+        E   DA  +A +A K+A+ +  DVLIIDTAGRLH 
Sbjct: 136 DVYRPAAMLQLKKLGDKIGVPVFLEEDEKDAVKIAKDALKKAKEENYDVLIIDTAGRLHI 195

Query: 208 NSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
           +        +++   KR+     P  VL V+DA TGQ ++   + F+   G TG+++TKM
Sbjct: 196 DE-------ELLEEAKRIKEETNPDEVLFVIDAMTGQESVNIAKAFNEAVGMTGIVLTKM 248

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           D  ARGG  + +      P+ F GVGE I D +PF     ++ I G  D
Sbjct: 249 DSDARGGVALSVKGVTGKPIKFAGVGEKIEDFQPFYPDRVASRILGMGD 297


>gi|270706059|ref|ZP_06223091.1| cell division protein FtsY-like protein [Haemophilus influenzae
           HK1212]
 gi|270315790|gb|EFA27914.1| cell division protein FtsY-like protein [Haemophilus influenzae
           HK1212]
          Length = 162

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 108/162 (66%), Gaps = 1/162 (0%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDF 107
           LE+ L+ +DIGV    KI++ L      K++    +LY   ++ +  +L P+++P   D 
Sbjct: 1   LEEQLLIADIGVPTTSKIIKNLTEHASRKELQDAELLYQQLKVEMADILEPVARPLEIDS 60

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           + +P+VIL+VGVNGVGKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R   
Sbjct: 61  TKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHI 120

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
             V    GSD+A++ ++A + A A+ +D+LI DTAGRL N +
Sbjct: 121 PVVAQSTGSDSASVIFDAMQSAAARNIDILIADTAGRLQNKN 162


>gi|300123716|emb|CBK24988.2| unnamed protein product [Blastocystis hominis]
          Length = 521

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 154/310 (49%), Gaps = 24/310 (7%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE------- 68
           +L KG  S   KL+   T +I    + + V +E+ + L+ SD+ + +  K+ E       
Sbjct: 5   ELGKGLTSALSKLQ---TSVIIDDNVVNEVIKEISNALLHSDVNLKIVMKLRETIKNRVT 61

Query: 69  -ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTT 126
            E       K   +QR +Y+  EL++ ML P+  +PF      R +VI+ VG+ G GKTT
Sbjct: 62  IECQAAGVNKHRVIQRAVYE--ELVN-MLSPVEVQPFK-PVRGRSNVIMFVGLQGSGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGK +      G +  +   DTFR+ A DQLK  A +    F  S   SD   +A +  
Sbjct: 118 TIGKFAAYYKRKGWRTCMVCADTFRAGAFDQLKQNAVKVKVPFYGSYTESDPVVIAEQGV 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNA 245
            Q + +  +++I+DT+GR      L          +K++  H  P +++ VLD+T GQ A
Sbjct: 178 SQFKKEHFEIIIVDTSGRHKQEEGL-------FEEMKQVQSHIHPDNIVFVLDSTIGQAA 230

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
             Q + F        +I+TK+DG A+GGG +  V     P+ F G GEG +DLEPF A  
Sbjct: 231 FDQAQAFQRTVDIGSVIITKLDGNAKGGGALSAVAATGAPIIFTGSGEGFDDLEPFEASS 290

Query: 306 FSAVITGCLD 315
           F + + G  D
Sbjct: 291 FVSRLLGMGD 300


>gi|240104007|ref|YP_002960316.1| signal recognition particle protein Srp54 [Thermococcus
           gammatolerans EJ3]
 gi|259511389|sp|C5A233|SRP54_THEGJ RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|239911561|gb|ACS34452.1| Signal recognition particle, subunit SRP54 (srp54) [Thermococcus
           gammatolerans EJ3]
          Length = 448

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 150/283 (53%), Gaps = 24/283 (8%)

Query: 45  VREELEDL---LIRSDIGV----AVAQKIVEELLTKRYAKDVS----VQRVLYD-VSELI 92
           +RE + D+   LI+SD+ V     + ++I E  L ++    VS    V +++Y+ +++L+
Sbjct: 28  IREVVRDIQRALIQSDVNVRLVLQLTKRIQERALNEKPPAGVSPREHVIKIVYEELTKLL 87

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            K  +PL      +   +P ++L VG+ G GKTT I KL++ +   G KV L   DT+R 
Sbjct: 88  GKEAVPL------EIREKPTILLTVGIQGSGKTTTIAKLARHLQKRGYKVGLVCTDTWRP 141

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A  QLK   +  + +        DA  LA E  +  + K VDV+I+DTAGR    S L+
Sbjct: 142 GAYYQLKQLVEPYNIEVFGDPGEKDAIKLAREGVEYFKDKGVDVIIVDTAGRHKEESGLI 201

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + ++   +K      PH V+ V+D T GQ A  Q   F        +I+TK+DG+A+G
Sbjct: 202 EEMKQISEAIK------PHEVILVIDGTIGQQAYHQALAFKEATPIGSIIVTKLDGSAKG 255

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG +  V     P+ F+GVGE I+DLEPF  K F + + G  D
Sbjct: 256 GGALSAVAATGAPIKFIGVGEKIDDLEPFDPKRFVSRLLGLGD 298


>gi|167045397|gb|ABZ10052.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine crenarchaeote HF4000_APKG10F15]
          Length = 559

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 145/280 (51%), Gaps = 16/280 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMP 98
           D V  ELE  L+ SD+   V   I  +L TK     V+ +     V   ++E I  M   
Sbjct: 27  DDVLSELEISLLESDVATEVIDSIKSDLSTKLVGSRVNKKEIEDFVKKSLTENISSMFDD 86

Query: 99  ------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                 LS   +      P++IL VG+NG GKTT + K++  +    + V++AA DTFR+
Sbjct: 87  AGSVDILSNIKSKTDPQDPYLILFVGINGTGKTTTVAKIANLLQKNKISVVVAAADTFRA 146

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI+QL+   ++ +   +    GSD AA+A++A   A++ KVD ++ID+AGR+  N  LM
Sbjct: 147 GAIEQLREHINKLNLKLIAQNYGSDPAAVAHDALLYAKSHKVDCVLIDSAGRMQTNKNLM 206

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             I K+ +V+      +P   + V D+  G +A+ Q   FH      G I+TK D   RG
Sbjct: 207 EQIAKISKVV------SPDLKIFVGDSLAGNDAVSQAREFHKHTTFDGAILTKSDADTRG 260

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G  + IV   K PV ++G G+G +DLE F  + F   + G
Sbjct: 261 GAALSIVAVTKKPVIYVGTGQGYDDLELFSKEIFLETVFG 300


>gi|306820620|ref|ZP_07454249.1| signal recognition particle protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551351|gb|EFM39313.1| signal recognition particle protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 443

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 140/268 (52%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  V ++  +   ++V       Q+V+  V++ + +++  +    N   
Sbjct: 39  LLEADVNYKVVKDFVAKVKERSVGEEVMKSLTPGQQVIKIVNDELKELMGSVQSKINIS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P VIL+ G+ G GKTT  GKL+  +   G   ML A D +R AAI QL+I +D+  A
Sbjct: 98  SKPPTVILMSGLQGAGKTTTTGKLAYHLKSQGKNPMLVACDVYRPAAITQLQILSDKVGA 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
            F   E   +   +A  A + A+    DV+IIDTAGRLH +  LM  + K I+   R   
Sbjct: 158 KFYSEEGNKNPVTIAQNAVESAKTLGFDVVIIDTAGRLHIDEELMQEL-KNIKSTVR--- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+DA TGQ+ +  V+ F    G  G+I++K+DG  RGG  + I      P+ 
Sbjct: 214 --PSEILLVVDAMTGQDTVNIVKSFDEALGIDGVILSKLDGDTRGGAALSIRAVTNKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F  +GE INDLEPF     ++ I G  D
Sbjct: 272 FAAIGEKINDLEPFYPDRIASRILGMGD 299


>gi|16081627|ref|NP_393991.1| signal recognition particle protein Srp54 [Thermoplasma acidophilum
           DSM 1728]
 gi|12230635|sp|Q9HKT0|SRP54_THEAC RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|10639683|emb|CAC11655.1| probable signal recognition particle protein [Thermoplasma
           acidophilum]
          Length = 456

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 159/301 (52%), Gaps = 20/301 (6%)

Query: 23  STSLKLKEGITDIISSRRLD-DGVRE---ELEDLLIRSDIGVAVAQKIVEEL----LTKR 74
           S S  L+E I  I  S  +D + V+E   +L+ +L+++D+ V    ++ +E+    L ++
Sbjct: 5   SFSASLRETIRKITGSSYIDKETVKEISKDLQRILLKADVNVKTVLQVTKEMERRALEEK 64

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
               ++ Q   Y V  +  ++L  L +P N     +P  I++VG+ G GKTT  GKL++ 
Sbjct: 65  PPAGMAHQD--YMVRIIYEELLKILGEPSNVKL--KPQTIMLVGLYGNGKTTTAGKLARF 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
            +  GL   L A D  R AA DQLK  A   +A F   +   D   L     +Q   K V
Sbjct: 121 FAKKGLNSGLIAADVHRYAAYDQLKQIASEVNAKFYGDQSEKDPVRLIKHGLEQL--KDV 178

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
            V IIDT+GR   ++ L   I ++   +      AP  VL ++DAT GQ A  + + F+ 
Sbjct: 179 AVKIIDTSGRDSMDAELFDEIRRIKEAV------APDEVLMIIDATMGQQAGPEAKAFND 232

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
             G TG+I+TKMDGTA+GGG +  V    +P+YF+G GE ++DLE F  K F + + G  
Sbjct: 233 AIGVTGIIITKMDGTAKGGGALSAVAEIHVPIYFIGTGEHMDDLEVFDPKKFLSRLLGLG 292

Query: 315 D 315
           D
Sbjct: 293 D 293


>gi|167044950|gb|ABZ09615.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine crenarchaeote HF4000_APKG8G2]
          Length = 605

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 16/280 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMP 98
           D V  ELE  L+ SD+   V   I  +L TK     V+ +     V   ++E I  M   
Sbjct: 27  DDVLSELEISLLESDVATEVIDSIKSDLSTKLVGSRVNKKEIEDFVKKSLTENISSMFDD 86

Query: 99  ------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                 LS   +      P++IL VG+NG GKTT I K++  +    + V++AA DTFR+
Sbjct: 87  AGSVDILSNIKSKTDPQDPYLILFVGINGTGKTTTIAKIANLLQKNKISVVVAAADTFRA 146

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI+QL+   ++ +   +    GSD AA+A++A   A++ KVD ++ID+AGR+  N  LM
Sbjct: 147 GAIEQLREHINKLNLKLIAQNYGSDPAAVAHDALLYAKSHKVDCVLIDSAGRMQTNKNLM 206

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             I K+ +V+      +P   + V D+  G +A+ Q   FH      G I+TK D   RG
Sbjct: 207 EQIAKISKVV------SPDLKIFVGDSLAGNDAVSQAREFHKHTTFDGAILTKSDADTRG 260

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G  + IV   K PV ++G G+G +DLE F  + F   + G
Sbjct: 261 GAALSIVAVTKKPVIYVGTGQGYDDLELFSKEIFLETVFG 300


>gi|302537178|ref|ZP_07289520.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           C]
 gi|302446073|gb|EFL17889.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           C]
          Length = 407

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 120/307 (39%), Positives = 177/307 (57%), Gaps = 19/307 (6%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    A +   L +G+  ++S   LD+   EE+E+ L+ +D+GVA  Q++VE L  +  
Sbjct: 109 RLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVAPTQELVERL--RER 166

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---------SHRPHVILVVGVNGVGKTT 126
            K +  +      +EL   +   L      DF         +  P V++VVGVNG GKTT
Sbjct: 167 VKVLGTR----TPAELRTLLKEELLTLVGTDFDRAVKTESAADTPGVVMVVGVNGTGKTT 222

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++AY+A 
Sbjct: 223 TTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAV 282

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNA 245
           K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++   H P   VL VLDATTGQN 
Sbjct: 283 KEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEVLLVLDATTGQNG 339

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF  + 
Sbjct: 340 LTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPEA 399

Query: 306 FSAVITG 312
           F   + G
Sbjct: 400 FVDALIG 406


>gi|222445744|ref|ZP_03608259.1| hypothetical protein METSMIALI_01386 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435309|gb|EEE42474.1| hypothetical protein METSMIALI_01386 [Methanobrevibacter smithii
           DSM 2375]
          Length = 480

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 155/278 (55%), Gaps = 17/278 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD---- 87
           IS + L+D +  ELE  L+  D+ + VA  +V+    +L+ ++  +   +    Y+    
Sbjct: 190 ISEKHLED-ILWELEMGLLEGDVAMEVASAVVDSVKDDLVGRKIKRSNDITEYTYNALRN 248

Query: 88  -VSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
            V+E+I      +++      +   P V++ VG+NG GKTT IGKL+      G   ++A
Sbjct: 249 AVAEIIDIPGKSMTEMIEAKKAQGEPLVVMFVGINGTGKTTTIGKLANYYLKKGYTPVIA 308

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR+ AI+Q+   AD+     +  + GSD AA+A++A + A+A+  ++++IDTAGR+
Sbjct: 309 AADTFRAGAIEQVNYHADKVGVKLIKHQKGSDPAAVAFDAVEHAKAQGKELVLIDTAGRM 368

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             N+ LM  + K+ RV K      P  V+ V DA TG +A +Q   F+      G+I+TK
Sbjct: 369 QTNTNLMDEMKKIKRVAK------PDLVVFVGDALTGNDATQQASKFNEAIDLDGVILTK 422

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            D  ++GG  + I    K P+ FLG+G+G +D++ + A
Sbjct: 423 ADADSKGGASLSIGYVIKKPILFLGMGQGYDDIKEYDA 460


>gi|322368143|ref|ZP_08042712.1| signal recognition particle-docking protein FtsY [Haladaptatus
           paucihalophilus DX253]
 gi|320552159|gb|EFW93804.1| signal recognition particle-docking protein FtsY [Haladaptatus
           paucihalophilus DX253]
          Length = 372

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 143/266 (53%), Gaps = 23/266 (8%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEEL------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           ELE  L+ SD+ ++VAQ++++ +       T++++ +         V + +   L+ +  
Sbjct: 101 ELEMALLESDVEMSVAQEMLDGIRNDLVGATRKFSAETGDV-----VEDALRDSLLSVIS 155

Query: 102 PFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              +DF  R      P VI+  GVNGVGKTT I KLS+   + G   ++A GDT+R+ A 
Sbjct: 156 VGQFDFDQRVAEADKPLVIIFTGVNGVGKTTSIAKLSRYFEERGYSSVMANGDTYRAGAN 215

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            Q++  AD      +  E G D AA+ Y+A + A A  +D+++ DTAGRLH +  LM  +
Sbjct: 216 QQIREHADALDTKLIAHEQGGDPAAVIYDAVEYADAHDIDIVLGDTAGRLHTSEGLMDQL 275

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K+ RV+       P   + V +A  GQ+A+++ + F   A   G I+TK D  ++GG  
Sbjct: 276 EKIGRVVD------PDMTIFVDEAVAGQDAVQRAKEFDEAAEIDGSILTKADADSKGGAA 329

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPF 301
           I I      P+ FLG G+G +D+E F
Sbjct: 330 ISISHVTGKPILFLGTGQGYDDIEQF 355


>gi|148642761|ref|YP_001273274.1| signal recognition particle GTPase SRP54 [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551778|gb|ABQ86906.1| signal recognition particle GTPase SRP54 [Methanobrevibacter
           smithii ATCC 35061]
          Length = 470

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 155/278 (55%), Gaps = 17/278 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD---- 87
           IS + L+D +  ELE  L+  D+ + VA  +V+    +L+ ++  +   +    Y+    
Sbjct: 180 ISEKHLED-ILWELEMGLLEGDVAMEVASAVVDSVKDDLVGRKIKRSNDITEYTYNALRN 238

Query: 88  -VSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
            V+E+I      +++      +   P V++ VG+NG GKTT IGKL+      G   ++A
Sbjct: 239 AVAEIIDIPGKSMTEMIEAKKAQGEPLVVMFVGINGTGKTTTIGKLANYYLKKGYTPVIA 298

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR+ AI+Q+   AD+     +  + GSD AA+A++A + A+A+  ++++IDTAGR+
Sbjct: 299 AADTFRAGAIEQVNYHADKVGVKLIKHQKGSDPAAVAFDAVEHAKAQGKELVLIDTAGRM 358

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             N+ LM  + K+ RV K      P  V+ V DA TG +A +Q   F+      G+I+TK
Sbjct: 359 QTNTNLMDEMKKIKRVAK------PDLVVFVGDALTGNDATQQASKFNEAIDLDGVILTK 412

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            D  ++GG  + I    K P+ FLG+G+G +D++ + A
Sbjct: 413 ADADSKGGASLSIGYVIKKPILFLGMGQGYDDIKEYDA 450


>gi|261349709|ref|ZP_05975126.1| putative signal recognition particle protein [Methanobrevibacter
           smithii DSM 2374]
 gi|288861664|gb|EFC93962.1| putative signal recognition particle protein [Methanobrevibacter
           smithii DSM 2374]
          Length = 470

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 155/278 (55%), Gaps = 17/278 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD---- 87
           IS + L+D +  ELE  L+  D+ + VA  +V+    +L+ ++  +   +    Y+    
Sbjct: 180 ISEKHLED-ILWELEMGLLEGDVAMEVASAVVDSVKDDLVGRKIKRSNDITEYTYNALRN 238

Query: 88  -VSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
            V+E+I      +++      +   P V++ VG+NG GKTT IGKL+      G   ++A
Sbjct: 239 AVAEIIDIPGKSMTEMIEAKKAQGEPLVVMFVGINGTGKTTTIGKLANYYLKKGYTPVIA 298

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR+ AI+Q+   AD+     +  + GSD AA+A++A + A+A+  ++++IDTAGR+
Sbjct: 299 AADTFRAGAIEQVNYHADKVGVKLIKHQKGSDPAAVAFDAVEHAKAQGKELVLIDTAGRM 358

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             N+ LM  + K+ RV K      P  V+ V DA TG +A +Q   F+      G+I+TK
Sbjct: 359 QTNTNLMDEMKKIKRVAK------PDLVVFVGDALTGNDATQQASKFNEAIDLDGVILTK 412

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            D  ++GG  + I    K P+ FLG+G+G +D++ + A
Sbjct: 413 ADADSKGGASLSIGYVIKKPILFLGMGQGYDDIKEYDA 450


>gi|108864006|gb|ABG22369.1| Signal recognition particle 54 kDa protein, chloroplast precursor,
           putative, expressed [Oryza sativa Japonica Group]
          Length = 482

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 157/312 (50%), Gaps = 29/312 (9%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLT 72
           +LT G  S   KL+   TD ++     D + E + D+   L+ +D+ + V +  +E +  
Sbjct: 4   QLTTGLESAWNKLRG--TDQLTK----DNIAEPMRDIRRALLEADVSLPVVRSFIESVTE 57

Query: 73  KRYAKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVG 123
           K    DV         + +V+ D  EL+  M   +S   +  F+   P VIL+ G+ GVG
Sbjct: 58  KAVGTDVIRGVKPEQQLVKVVND--ELVQLMGGEVS---DLVFAKTAPTVILLAGLQGVG 112

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTTV  KL+  +   G   ML A D +R AAIDQL I   +           +  + +A 
Sbjct: 113 KTTVCAKLAYYLKKMGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAK 172

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
              K+A++KK DV+I+DTAGRL  +  +M+ + ++ R +       P  VL V+DA TGQ
Sbjct: 173 NGIKEAKSKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVN------PTEVLLVVDAMTGQ 226

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            A   V  F+   G TG I+TK+DG +RGG  + I      P+ F+G GE + DLEPF  
Sbjct: 227 EAASLVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYP 286

Query: 304 KDFSAVITGCLD 315
              +  I G  D
Sbjct: 287 DRMAQRILGMGD 298


>gi|327310166|ref|YP_004337063.1| GTP-binding signal recognition particle SRP54 [Thermoproteus
           uzoniensis 768-20]
 gi|326946645|gb|AEA11751.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Thermoproteus uzoniensis 768-20]
          Length = 437

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 17/307 (5%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV----AVAQKIVEE 69
           +R LT+ F+    K++ G+ + I  + L + +  EL+  L+++D+ +    A     V  
Sbjct: 1   MRPLTELFSKLVEKIR-GV-EYIDEQTLQE-ISRELQRSLLKADVPLDMVRAFTDTAVRR 57

Query: 70  LLTKRYAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  +R    + V+  V+Y + + + K+L   ++P +     RP+VI+++GV G GKTT  
Sbjct: 58  IREERPPPGIPVKDFVIYVIYQELVKLLGGEAEP-DLKLPKRPYVIMLLGVEGSGKTTTA 116

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            K++      GLKV +   DT R AA DQLK  A+R  A F     G+DA  +A    +Q
Sbjct: 117 AKIALFYIKRGLKVGVVETDTIRPAAYDQLKQLAERVGARFYGERDGNDAVGIARRGLEQ 176

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
              K VD++++DTAGR  N   L+  +  +   +K      P  V+ V+DAT G+ A  Q
Sbjct: 177 M--KGVDLVLVDTAGRHKNEQSLLEEVKAIYDAIK------PDEVMLVVDATVGRQAAAQ 228

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F        + +TKMD TARGGG +  V      V F+GVGEG++++EPF  + F A
Sbjct: 229 AEAFMKYVPIHSVAITKMDSTARGGGALAAVAKTGARVKFIGVGEGVDEIEPFSPRKFVA 288

Query: 309 VITGCLD 315
            + G  D
Sbjct: 289 RVLGMGD 295


>gi|156937833|ref|YP_001435629.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ignicoccus
           hospitalis KIN4/I]
 gi|156566817|gb|ABU82222.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ignicoccus
           hospitalis KIN4/I]
          Length = 442

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/273 (34%), Positives = 144/273 (52%), Gaps = 21/273 (7%)

Query: 47  EELEDLLIRSDIGV----AVAQKIVEELLTKRYA-----KDVSVQRVLYDVSELIHKMLM 97
           +EL+  LI+SD+ V     + ++I E  L +R       +D  V+ V  +++ L      
Sbjct: 28  KELQKTLIKSDVNVKLVLQLTKRIRERALKERPPPGASRRDWFVKIVYEELANLFGGDKE 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P  KP        P VI++VGV G GKTT  GKL++     G +V L A DT+R  A DQ
Sbjct: 88  PELKP-----PKVPWVIMMVGVQGSGKTTTAGKLARFYKVRGYRVALVAADTYRPGAKDQ 142

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A+R    F  +E G DA  +A    + A+++  +++I+DTAGR  N + L+  + +
Sbjct: 143 LRQLAERAKVLF-YTEPGDDAVGIAKRGVEWAKSQGAEIIIVDTAGRHKNEAELLKEMKE 201

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           M   +K      P  V+ V+DA+ GQ A    E FH       +++TK+DGTA+GGG + 
Sbjct: 202 MSEAIK------PDEVMLVIDASIGQQAKALAEAFHKTTPIGSIVVTKLDGTAKGGGALS 255

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            V      + F+G GE + +LEPF  K F A I
Sbjct: 256 AVAVTGATIKFVGTGEKLEELEPFKPKKFVARI 288


>gi|218185265|gb|EEC67692.1| hypothetical protein OsI_35151 [Oryza sativa Indica Group]
          Length = 557

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 158/310 (50%), Gaps = 25/310 (8%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLT 72
           +LT G  S   KL+   TD ++     D + E + D+   L+ +D+ + V +  +E +  
Sbjct: 79  QLTTGLESAWNKLRG--TDQLTK----DNIAEPMRDIRRALLEADVSLPVVRSFIESVTE 132

Query: 73  KRYAKDV-----SVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKT 125
           K    DV       Q+++  V+ EL+  M   +S   +  F+   P VIL+ G+ GVGKT
Sbjct: 133 KAVGTDVIRGVKPEQQLVKVVNDELVQLMGGEVS---DLVFAKTAPTVILLAGLQGVGKT 189

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           TV  KL+  +   G   ML A D +R AAIDQL I   +           +  + +A   
Sbjct: 190 TVCAKLAYYLKKMGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKNG 249

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K+A++KK DV+I+DTAGRL  +  +M+ + ++ R +       P  VL V+DA TGQ A
Sbjct: 250 IKEAKSKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVN------PTEVLLVVDAMTGQEA 303

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
              V  F+   G TG I+TK+DG +RGG  + I      P+ F+G GE + DLEPF    
Sbjct: 304 ASLVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPDR 363

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 364 MAQRILGMGD 373


>gi|126179908|ref|YP_001047873.1| signal recognition particle-docking protein FtsY [Methanoculleus
           marisnigri JR1]
 gi|125862702|gb|ABN57891.1| signal recognition particle-docking protein FtsY [Methanoculleus
           marisnigri JR1]
          Length = 354

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 146/264 (55%), Gaps = 20/264 (7%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEEL---LTKRYAK-DVSVQRVLYDVSELIHKMLMPLSKPF 103
           ELE +L+ +D+ + V  +I+  +   L  R+ K   SV  ++  VS L   +   L +  
Sbjct: 87  ELEMVLLENDVALPVTDEIIARMRRDLVGRHRKIGASVDDLV--VSTLRSALCGVLGE-- 142

Query: 104 NWDFS------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             D S       RP  IL  GVNG GKTT + K+ + +   G  V++ AGDTFR+ AI+Q
Sbjct: 143 GLDLSRYIREHERPVKILFTGVNGTGKTTTVAKVGQYLQTNGFTVVIGAGDTFRAGAIEQ 202

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           ++  ADR     +  + G+D +A+ ++A + A+A  +DV++ DTAGR HN + LM  + K
Sbjct: 203 IRTHADRLGIKTIQHQAGADPSAVLFDAVQYAKAHDIDVVLADTAGRFHNRANLMNQLDK 262

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RV+K      P  V+ V +A  G +A+ + + F+   GT  +++TK D   +GG  I 
Sbjct: 263 IRRVMK------PDLVVYVDEAVAGNDAVIRADEFNKAVGTDAVVLTKADMDPKGGAAIS 316

Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301
           +  T   P+ FLG G+G +D+ PF
Sbjct: 317 VAHTVGKPILFLGTGQGYDDIVPF 340


>gi|115484239|ref|NP_001065781.1| Os11g0153700 [Oryza sativa Japonica Group]
 gi|62701662|gb|AAX92735.1| signal recognition particle protein, putative [Oryza sativa
           Japonica Group]
 gi|108864005|gb|ABG22368.1| Signal recognition particle 54 kDa protein, chloroplast precursor,
           putative, expressed [Oryza sativa Japonica Group]
 gi|113644485|dbj|BAF27626.1| Os11g0153700 [Oryza sativa Japonica Group]
 gi|215765043|dbj|BAG86740.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222615534|gb|EEE51666.1| hypothetical protein OsJ_33002 [Oryza sativa Japonica Group]
          Length = 557

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 158/310 (50%), Gaps = 25/310 (8%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLT 72
           +LT G  S   KL+   TD ++     D + E + D+   L+ +D+ + V +  +E +  
Sbjct: 79  QLTTGLESAWNKLRG--TDQLTK----DNIAEPMRDIRRALLEADVSLPVVRSFIESVTE 132

Query: 73  KRYAKDV-----SVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKT 125
           K    DV       Q+++  V+ EL+  M   +S   +  F+   P VIL+ G+ GVGKT
Sbjct: 133 KAVGTDVIRGVKPEQQLVKVVNDELVQLMGGEVS---DLVFAKTAPTVILLAGLQGVGKT 189

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           TV  KL+  +   G   ML A D +R AAIDQL I   +           +  + +A   
Sbjct: 190 TVCAKLAYYLKKMGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKNG 249

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K+A++KK DV+I+DTAGRL  +  +M+ + ++ R +       P  VL V+DA TGQ A
Sbjct: 250 IKEAKSKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVN------PTEVLLVVDAMTGQEA 303

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
              V  F+   G TG I+TK+DG +RGG  + I      P+ F+G GE + DLEPF    
Sbjct: 304 ASLVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPDR 363

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 364 MAQRILGMGD 373


>gi|118355606|ref|XP_001011062.1| SRP54-type protein, GTPase domain containing protein [Tetrahymena
           thermophila]
 gi|89292829|gb|EAR90817.1| SRP54-type protein, GTPase domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 460

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 146/281 (51%), Gaps = 10/281 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR---VLYDVSELIHKM 95
           ++L + V ++++  L++SDI V   +++ + +L K    + +V +   +   V + + KM
Sbjct: 25  KQLLNKVLKDIQLALLQSDINVKYVKQLSDNILQKCNNIEEAVNKKKLIQQLVVQELTKM 84

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L P  +PF+   S +P+V++ VG+ G GKTT   K +      G +  L   DTFR+ A 
Sbjct: 85  LDPKKQPFSLK-SGKPNVVMFVGLQGAGKTTTCAKYANYWKKKGWRTCLICADTFRAGAF 143

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           DQL+  A +    F  +   +D  A+A E  K  Q +  +V+IIDT+GR    S L   +
Sbjct: 144 DQLQQIATKIRIPFYGNRTETDPVAIAIEGVKTFQKQNFEVIIIDTSGRHMQESELFDEM 203

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            ++   +       P+  + V+D + GQ  L Q + F        +I+TK+DG ++GGG 
Sbjct: 204 KQIYSAV------CPNECIFVMDGSNGQACLNQAQAFKKAVDVGSVIITKLDGHSKGGGA 257

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           +  V   + P+ FLG GE  +DLE F A+ F   + G  D+
Sbjct: 258 LSAVAATESPIIFLGTGEHFDDLETFKAESFVKRLLGLGDF 298


>gi|289581485|ref|YP_003479951.1| signal recognition particle-docking protein FtsY [Natrialba magadii
           ATCC 43099]
 gi|289531038|gb|ADD05389.1| signal recognition particle-docking protein FtsY [Natrialba magadii
           ATCC 43099]
          Length = 470

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/269 (34%), Positives = 141/269 (52%), Gaps = 19/269 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           +G   ELE  L+ SD+ + VA++I++    EL+ +      S   V   V E +   +  
Sbjct: 198 EGPLHELEMALLSSDVEMGVAEEILDNIRDELIGETRTFTTSTGEV---VEEALRDAIYD 254

Query: 99  LSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           +     +DF  R      P  I+  GVNGVGKTT I KLS+   + G   ++A GDT+R+
Sbjct: 255 VISVGQFDFDERIAIEDKPVTIIFTGVNGVGKTTSIAKLSRYFEERGYSTVMANGDTYRA 314

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A +Q++  A+      +  E G D AA+ Y+A + A+A  VDV++ DTAGRLH +  LM
Sbjct: 315 GANEQIQEHANALDTKLITHEQGGDPAAVLYDAVEYAEANDVDVVLGDTAGRLHTDEGLM 374

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+ RV+       P   L V +A  GQ+A+ +   F+  A   G I+TK D  + G
Sbjct: 375 DQLEKIDRVVD------PDMTLFVDEAVAGQDAVNRAREFNNAAEIDGAILTKADADSNG 428

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G  I +      P+ FLGVG+G + +E F
Sbjct: 429 GAAISVAHVTGRPILFLGVGQGYDHIERF 457


>gi|330508423|ref|YP_004384851.1| signal recognition particle-docking protein FtsY [Methanosaeta
           concilii GP-6]
 gi|328929231|gb|AEB69033.1| signal recognition particle-docking protein FtsY [Methanosaeta
           concilii GP-6]
          Length = 388

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 141/263 (53%), Gaps = 19/263 (7%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFN 104
           LE  L+ SD+ + VA++IV E+ +    K    +++  D  +L    +   L+ L    +
Sbjct: 120 LEMALMESDVALPVAEEIVREVKSDLVGKK---KKIGSDTGQLAEDSLRNALITLLSKNH 176

Query: 105 WDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
            DF        +P  IL VGVNG GKTT I K++K + D    V+LAAGDTFR+ AI+QL
Sbjct: 177 LDFDEYIRAKDKPVKILFVGVNGTGKTTSIAKVAKYLMDQSYSVVLAAGDTFRAGAIEQL 236

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++  +      V  + G D AA+ ++A + A+A   DV++ DTAGRLH N  LM  + K+
Sbjct: 237 EVHGNNLGLKVVKHKTGGDPAAVIFDAIEYARAHNKDVVLADTAGRLHTNINLMDQMRKI 296

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +RV        P  ++ V +A  G +A+ +  +F+      G I+TK D  A+GG  I I
Sbjct: 297 VRVT------TPDLLIFVDEAIAGNDAVERARLFNESVPIDGSILTKTDADAKGGSAISI 350

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
                 PV FLGVG+   DL  F
Sbjct: 351 AYITGKPVLFLGVGQTYPDLVKF 373


>gi|94267668|ref|ZP_01290954.1| Signal recognition particle protein [delta proteobacterium MLMS-1]
 gi|93451906|gb|EAT02634.1| Signal recognition particle protein [delta proteobacterium MLMS-1]
          Length = 456

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 113/205 (55%), Gaps = 6/205 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P VI++VG+ G GKTT  GKL++++   G K  L   D +R AAIDQL + A+    
Sbjct: 97  SRTPAVIMLVGLQGSGKTTSAGKLARRLRGEGRKPYLVPADVYRPAAIDQLTVLAESLQV 156

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               S    D   +  +A  +A     D L+IDTAGRLH +  LM  +G++   L+    
Sbjct: 157 PVYPSRSDQDPVTICRQALHRADEAGCDTLLIDTAGRLHVDETLMDELGRLKEALQ---- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V DA TGQ+A+   E FH     +G+I+TK+DG ARGG  + I      P+ 
Sbjct: 213 --PAEILLVADAMTGQDAVTVAEKFHQDLDLSGVILTKLDGDARGGAALSIRRATGRPLK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312
           F+G+GEG++ LEPF     ++ I G
Sbjct: 271 FVGLGEGLDALEPFHPDRMASRILG 295


>gi|320008304|gb|ADW03154.1| signal recognition particle-docking protein FtsY [Streptomyces
           flavogriseus ATCC 33331]
          Length = 401

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/279 (41%), Positives = 167/279 (59%), Gaps = 13/279 (4%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           LD+   EE+ED L+ +D+GVA  Q++VE L   R    V   R   ++  L+ + L+ L 
Sbjct: 128 LDEDTWEEIEDTLLTADVGVAPTQELVERL---RERVRVLGTRTPDELRTLLREELVTLL 184

Query: 101 KP-FNWDFSHR-----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            P  + +         P V++VVGVNG GKTT  GKL++ +   G  V+L A DTFR+AA
Sbjct: 185 GPELDREVKTEGGDTTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAA 244

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            DQL+ W +R  A  V    G D A++A++A K+  A+  DV++IDTAGRLH  + LM  
Sbjct: 245 ADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDE 304

Query: 215 IGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
           +GK+ RV+++   H P   VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG
Sbjct: 305 LGKVKRVVEK---HGPLDEVLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGG 361

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            +I +     +PV  +G+GEG +DL PF    F   + G
Sbjct: 362 IVIAVQRELGVPVKLIGLGEGPDDLAPFEPGAFVDALIG 400


>gi|288930433|ref|YP_003434493.1| signal recognition particle-docking protein FtsY [Ferroglobus
           placidus DSM 10642]
 gi|288892681|gb|ADC64218.1| signal recognition particle-docking protein FtsY [Ferroglobus
           placidus DSM 10642]
          Length = 326

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 168/323 (52%), Gaps = 36/323 (11%)

Query: 5   KVASESLSWIRKLTKGFASTSLK------LKEGITDIISSRRL--DDGVRE----ELEDL 52
           K   E LS  RK     A   +       LKE +  +I  R +  D+G  E    ELE +
Sbjct: 3   KALKEKLSSFRKKVDEEAGEEIAKKEKIGLKEKLATLILEREIIIDEGKLEKVLPELEMI 62

Query: 53  LIRSDIGVAV----AQKIVEELLTKRYAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDF 107
           L+ SD+   V    ++++ E L+ +R     S+   VL ++ E++ ++L   SK + +DF
Sbjct: 63  LLESDVAFEVVDEISKRLKERLVGRRKGIGESLSSLVLKELKEILREIL---SKNY-FDF 118

Query: 108 SH---------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
                      +P  I+ VGVNG GKTT I KL+ ++  +G  V+LAAGDTFR+ AI+QL
Sbjct: 119 DEFVEKKLEEKKPLHIIFVGVNGTGKTTTIAKLAYRLLKSGKSVVLAAGDTFRAGAIEQL 178

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +    +     +  + G+D AA+ Y+A K A++K +DV++ DTAGR+H    L+  + K+
Sbjct: 179 EEHGKKLGVRVIKHKPGADPAAVIYDAIKHAESKGIDVVLSDTAGRMHTKKNLIDQLEKI 238

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RV        P   + V ++  G +A+ +  MF+   G  G I+TK+D   +GG  I I
Sbjct: 239 KRVTN------PDLTIFVDESLAGNDAVERARMFNEAIGIDGSILTKIDADPKGGCAISI 292

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
               + P+ F+G G+   DL  F
Sbjct: 293 SYVTEKPILFVGTGQNYEDLVKF 315


>gi|323702674|ref|ZP_08114335.1| signal recognition particle protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532337|gb|EGB22215.1| signal recognition particle protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 444

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 150/285 (52%), Gaps = 16/285 (5%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  +D V + + ++   L+ +D+   V ++ V  +  +   +DV       Q+V+  V +
Sbjct: 21  RLTEDDVNQAMREVRMALLEADVNFKVVKEFVAHVKERAIGQDVLESLSPAQQVIKIVKD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + ++L       N      P +I++VG+ G GKTT  GKL+K +S  G + +L AGD +
Sbjct: 81  ELTELLGGTQAKINLS-PKPPTIIMLVGLQGAGKTTTAGKLAKLLSKQGRRPLLVAGDIY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI QL++  ++ +   V S    D   +A  A +QA +   DV+IIDTAGRLH N  
Sbjct: 140 RPAAIKQLQVLGEQLNIP-VFSLGQEDPVKIAKAAVEQANSTGRDVVIIDTAGRLHINEE 198

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +  +   +K      PH +L V+DA TGQ A+   + F+   G  G+IMTK+DG A
Sbjct: 199 LMDELANIKASVK------PHEILLVVDAMTGQEAVNVADTFNQKLGLDGIIMTKLDGDA 252

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + +      P+ F G+GE ++ LEPF     +  I G  D
Sbjct: 253 RGGAALSVRKVTGCPIKFAGMGEKLDALEPFHPDRMADRILGMGD 297


>gi|298674678|ref|YP_003726428.1| signal recognition particle-docking protein FtsY [Methanohalobium
           evestigatum Z-7303]
 gi|298287666|gb|ADI73632.1| signal recognition particle-docking protein FtsY [Methanohalobium
           evestigatum Z-7303]
          Length = 359

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 151/273 (55%), Gaps = 22/273 (8%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSELIHK 94
           +D +++ L DL   L+ +DI ++V++ IVE    EL+  R        +++ D    + K
Sbjct: 85  EDDIQDTLWDLEMGLLENDIALSVSEAIVESVKNELVGTRRRIGSDTGKIVEDA---LKK 141

Query: 95  MLMPLSKPFNWDF------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            L  +     +DF      + +P  I+ VGVNG GKTT I K++  + +     ++AAGD
Sbjct: 142 SLYNIMSANTFDFDEYLKNAEKPVHIVFVGVNGTGKTTTIAKMANLLQNDNYSTVIAAGD 201

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+ AIDQ++  A++ +   +  +   D AA+ Y+A + A+++ +DV++ DTAGR+H N
Sbjct: 202 TFRAGAIDQIESHANKINTKLIKHQEMGDPAAVVYDAVQYAKSRSIDVVLSDTAGRMHTN 261

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM+ + K+ RV       +P  ++ V +A  G +A+ + + F+      G I+TK D 
Sbjct: 262 VNLMSQLEKVCRV------SSPDLIIFVDEAVAGNDAVERAQQFNDNIPIDGSILTKADA 315

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            ++GG  I I      P+ +LG+G+G  DL+ F
Sbjct: 316 DSKGGAAISIAYITGKPILYLGIGQGYEDLKKF 348


>gi|150403620|ref|YP_001330914.1| signal recognition particle-docking protein FtsY [Methanococcus
           maripaludis C7]
 gi|150034650|gb|ABR66763.1| signal recognition particle-docking protein FtsY [Methanococcus
           maripaludis C7]
          Length = 383

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 142/256 (55%), Gaps = 16/256 (6%)

Query: 56  SDIGVAVAQKIVEELLT-----KRYAKD----VSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +D+   V +KI+E L       K  AKD    +++  +   + E++ +    + K  +  
Sbjct: 111 ADVAFEVVEKIIESLKNQLVGLKISAKDNPEEITINALKKSIKEILSQEQSDVFKLIDEK 170

Query: 107 FSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            +  +P V+L VG+NG GKTT I KL   + + G  V++AAGDTFR+ AI+QL+     T
Sbjct: 171 KAKGKPAVLLFVGINGTGKTTSISKLGYILKERGYSVVMAAGDTFRAGAIEQLEEHGKNT 230

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   +  + G+D+AA+ Y+A   A+AK +DV++ DTAGR   N  LM  I K++RV K  
Sbjct: 231 AIKVIKHQKGADSAAVIYDAISHAKAKGIDVVLADTAGRQTTNINLMDEIKKVVRVTK-- 288

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  ++ V D+  G +A+ Q E F+      G I+TK D  A+GG  + I  +   P
Sbjct: 289 ----PDLIIFVGDSLAGNDAISQAEEFNNAIDIDGAILTKTDADAKGGAALSIAYSIGKP 344

Query: 286 VYFLGVGEGINDLEPF 301
           + F+GVG+  +D++ F
Sbjct: 345 ILFMGVGQRYSDIQEF 360


>gi|116750418|ref|YP_847105.1| signal recognition particle protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116750460|ref|YP_847147.1| signal recognition particle protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699482|gb|ABK18670.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699524|gb|ABK18712.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Syntrophobacter fumaroxidans MPOB]
          Length = 454

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 148/282 (52%), Gaps = 15/282 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           ++ +RE L ++   L+ +D+   VA+  V  +  +   ++V       Q+V+  V+E + 
Sbjct: 24  EENIREALREVRMALLEADVHYKVAKDFVTGIAERAVGQEVMTSLTPGQQVIKIVNEALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            ++   S+P        P  +L+VG+ G GKTT   KL++K+     K  L   D +R A
Sbjct: 84  DLMGGQSEPLRL-IGKPPVCLLMVGLQGSGKTTTTAKLARKLVQEHRKPCLVPADVYRPA 142

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           AI+QL   A + +     S +      +A EA   A+    D LI+DTAGRLH ++ LM 
Sbjct: 143 AIEQLVTLAGQINLPVYPSTVRQKPEEIAREAQGYAREHNCDTLIVDTAGRLHIDTELMG 202

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            +G++  +L+      P  +L V DA TGQ+A++    FH   G +G+I+TK+DG ARGG
Sbjct: 203 ELGRLKEILQ------PAEILLVADAMTGQDAVQVASAFHETLGLSGVILTKLDGDARGG 256

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I    + P+ F+G+GE ++ LE F     S+ I G  D
Sbjct: 257 AALSIRAVTRCPIKFIGLGEKLDALEVFHPDRMSSRILGMGD 298


>gi|187917955|ref|YP_001883518.1| cell division protein FtsY [Borrelia hermsii DAH]
 gi|119860803|gb|AAX16598.1| cell division protein FtsY [Borrelia hermsii DAH]
          Length = 284

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 153/264 (57%), Gaps = 8/264 (3%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           + E LED+L+ +DI   +  +I+E +   +       +  L  + + +   +    +P N
Sbjct: 22  IFENLEDILLEADIKNDIVIEIIEYIKKVKVK---DEKETLLKLKDFLKSYINQ--QPLN 76

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
            + + R +++L++G+NGVGKT+ I KL+ K+ + G  V++AA DTFR+AAI Q+KI +++
Sbjct: 77  LE-NKRLNILLIIGINGVGKTSSIIKLANKLKNEGKNVLIAAADTFRAAAIQQIKIQSEK 135

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                +    GSDAAA+ +++   A++K  D+LIIDTAGRL N   L+  + KM  V+K+
Sbjct: 136 IGIKVISQNQGSDAAAVIFDSISSAKSKNYDILIIDTAGRLQNKENLIKELQKMDNVIKK 195

Query: 225 --LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             ++    +  + V+D+ +G+N   Q E+F+      G+I TK D ++R GG++ I    
Sbjct: 196 QIIETDINYKKILVIDSISGKNVNNQAEIFNKAIEIDGIIATKFDSSSRAGGILNISKLF 255

Query: 283 KIPVYFLGVGEGINDLEPFVAKDF 306
           K P+YF   GE +  ++ F   D+
Sbjct: 256 KKPIYFFTFGEQVEHIKEFNTDDY 279


>gi|319776724|ref|YP_004139212.1| Signal recognition particle protein [Haemophilus influenzae F3047]
 gi|317451315|emb|CBY87553.1| Signal recognition particle protein [Haemophilus influenzae F3047]
          Length = 462

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 159/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A EA   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFYPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|297156886|gb|ADI06598.1| putative signal recognition particle receptor [Streptomyces
           bingchenggensis BCW-1]
          Length = 405

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 112/291 (38%), Positives = 160/291 (54%), Gaps = 24/291 (8%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
           S   LDD   EE+ED L+ +D+GVA  Q++VE L   R    V   R   ++  L+   L
Sbjct: 123 SREHLDDETWEEIEDTLLTADVGVAPTQELVEGL---RERVRVLGTRTPEELRGLLRAEL 179

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGK--------------TTVIGKLSKKMSDAGLKV 142
           + L      +     H    VG NG  K              TT  GKL++ +   G  V
Sbjct: 180 LQL---IGTEADRAVHTESGVGANGEEKPGVVMVVGVNGTGKTTTTGKLARVLVADGKSV 236

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA +QL+ W +R  A  V    G D A++A++A K+  A+  DV+++DTA
Sbjct: 237 VLGAADTFRAAAAEQLQTWGERVGARTVRGPEGGDPASVAFDAVKEGIAEGADVVLVDTA 296

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           GRLH  + LM  +GK+ RV+++   H A   VL VLDATTGQN L Q  +F  V   TG+
Sbjct: 297 GRLHTKTGLMDELGKVKRVVEK---HGAVDEVLLVLDATTGQNGLVQARVFAEVVNITGI 353

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           ++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 354 VLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEPEAFVDALIG 404


>gi|119952879|ref|YP_945088.1| cell division protein FtsY [Borrelia turicatae 91E135]
 gi|119861650|gb|AAX17418.1| cell division protein FtsY [Borrelia turicatae 91E135]
          Length = 284

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 151/264 (57%), Gaps = 8/264 (3%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           + E+LED+L+ +DI   +  +I+E +  K   KD   +     + + +   +   S   N
Sbjct: 22  IFEKLEDILLEADIKNDIVIEIIENI-KKLKVKDE--EETFLKLKDFLKSYINQQS--LN 76

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
            + + R +++L++GVNGVGKT+ I KL+ K  + G  V++AA DTFR+AAI+Q+KI +++
Sbjct: 77  LE-NKRLNILLIIGVNGVGKTSSIIKLANKFKNEGKNVLIAAADTFRAAAIEQIKIQSEK 135

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                +    GSDAAA+ +++   A+ K  D+LIIDTAGRL N   L+  + KM  V+K+
Sbjct: 136 IGIKVISQNQGSDAAAVIFDSISSAKTKNYDILIIDTAGRLQNKENLIKELQKMDNVIKK 195

Query: 225 --LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             +     +  + V+D+  G+N   Q E+F+      G+I TK D ++R GG+I I    
Sbjct: 196 QMIKTDVNYKKILVIDSIAGKNINNQTEIFNKAIEIDGIIATKFDSSSRAGGIINISKLF 255

Query: 283 KIPVYFLGVGEGINDLEPFVAKDF 306
           K P+YF   GE +  ++ F   D+
Sbjct: 256 KKPIYFFTFGEQVEHIKEFNTDDY 279


>gi|134299902|ref|YP_001113398.1| signal recognition particle protein [Desulfotomaculum reducens
           MI-1]
 gi|134052602|gb|ABO50573.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfotomaculum reducens MI-1]
          Length = 446

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 146/276 (52%), Gaps = 19/276 (6%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102
           E++  L+ +D+   V ++ V ++  +   +DV       Q+V+  V + + ++L      
Sbjct: 33  EVKMALLEADVNFKVVKEFVAQVKGRAVGQDVLESLSPAQQVIKIVRDELTELLGGTQAK 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            N      P +I++VG+ G GKTT  GKL+K +S  G + ++ AGD +R AAI QL++  
Sbjct: 93  INLS-PKPPTIIMLVGLQGAGKTTTAGKLAKLLSKQGRRPLMVAGDIYRPAAIKQLQVLG 151

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM---AGIGKMI 219
           D+ +   V S    +   +A  A +QA +   D++IIDTAGRLH N  LM   A I   +
Sbjct: 152 DQLNIP-VFSMGQENPVKIAQSAVEQANSTGRDLVIIDTAGRLHINEELMDELANIKSTV 210

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           R         PH +L V+DA TGQ A+   + F+   G  G++MTK+DG ARGG  + + 
Sbjct: 211 R---------PHEILLVVDAMTGQEAVNVADTFNQKLGLDGIVMTKLDGDARGGAALSVR 261

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                P+ F G+GE ++ LEPF     +  I G  D
Sbjct: 262 KVTGTPIKFAGMGEKLDALEPFYPDRMADRILGMGD 297


>gi|327399601|ref|YP_004340470.1| signal recognition particle protein [Hippea maritima DSM 10411]
 gi|327182230|gb|AEA34411.1| signal recognition particle protein [Hippea maritima DSM 10411]
          Length = 441

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/289 (34%), Positives = 157/289 (54%), Gaps = 21/289 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           +I+ + LD+ +RE ++  L+ +D+   V     +++ EEL  K   K ++  ++   V E
Sbjct: 21  VITEKDLDNALRE-IKFALLEADVNYKVVKDFTKELKEELKGKELEKSLTPGQI---VVE 76

Query: 91  LIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            +HK L  +    ++P     +  P +I++VG+ G GKTT   KL+K +   G + +L A
Sbjct: 77  EVHKKLTEILGGQAQPLT--ITKTPFIIMLVGLQGSGKTTTAAKLAKFLRSKGRQPLLVA 134

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AAI QL+I   + + D V S+  S    +A EA   A+    +V+IIDTAGRLH
Sbjct: 135 CDIYRPAAIKQLQILGKQINID-VFSKENSKPEDIAKEALNYAKQNGKNVIIIDTAGRLH 193

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  LM    ++ R+ ++++P     +L V DA  GQ A+   ++F    G TG I TK+
Sbjct: 194 IDDELME---ELERIKQKIEPD---EILFVADAMIGQEAVNVAKVFDERVGITGAIFTKL 247

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG ARGG  + I+     P+ F GVGE I+D EPF     ++ I G  D
Sbjct: 248 DGDARGGAALSIMKVVGKPIKFAGVGEKISDFEPFYPDRVASRILGMGD 296


>gi|289643132|ref|ZP_06475261.1| signal recognition particle-docking protein FtsY [Frankia symbiont
           of Datisca glomerata]
 gi|289507024|gb|EFD27994.1| signal recognition particle-docking protein FtsY [Frankia symbiont
           of Datisca glomerata]
          Length = 369

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/237 (41%), Positives = 140/237 (59%), Gaps = 12/237 (5%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK------RYAKDVSVQRVLYDVSELIHK 94
           LD+ V E++E  L+ +D+GV   +++V  L TK      R   DV V  +L D  EL+ +
Sbjct: 138 LDEEVWEDVETTLLVADVGVTPTEELVASLRTKVKVLGARRPADVHV--LLRD--ELLAQ 193

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           +     +        RP  ILVVGVNG GKTT  GK+++ +   G +V+L A DTFR+AA
Sbjct: 194 IGTSTDRTVQAFAQGRPANILVVGVNGTGKTTTCGKIARLLVADGRRVVLGAADTFRAAA 253

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            DQL+ W  R  A  V    G D A++A+EA K+  +  VD ++IDTAGRLH  + LM  
Sbjct: 254 ADQLETWGSRVGAYTVRGSEGGDPASVAFEAAKRGISDGVDTVVIDTAGRLHTKTGLMDE 313

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           + K+ +V+ +L P     VL VLDATTGQNA+ Q  +F      TG+++TK+DGT R
Sbjct: 314 LSKIKKVVAKLGPV--DEVLLVLDATTGQNAVEQARVFTQAVDITGVVLTKLDGTPR 368


>gi|295696070|ref|YP_003589308.1| signal recognition particle protein [Bacillus tusciae DSM 2912]
 gi|295411672|gb|ADG06164.1| signal recognition particle protein [Bacillus tusciae DSM 2912]
          Length = 445

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 154/306 (50%), Gaps = 21/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + +L+E    + S  +L     D   +E+   L+ +D+   V +  V  +  +   
Sbjct: 4   FEGLAGRLQEAFARLKSKGKLSEADVDEAMKEVRRALLAADVNFTVVRDFVARVRERAVG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           ++V       Q+V+    +++H  L  L   KP   + S RP V+++VG+ G GKTT  G
Sbjct: 64  QEVMKSLTPAQQVI----KIVHDELTALLGGKPSTLNLSGRPAVVMLVGLQGAGKTTTAG 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++ +   G + +L A D +R AA+ QL+   +         +  +D   ++  + ++A
Sbjct: 120 KLAQWVRKQGRRPLLVAADVYRPAAVRQLQTLGEALKVPVFSVDGDADPVEISKSSLERA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  DV+++DTAGRLH +  LM  + +M   +       P  +L V+DA TGQ+A+   
Sbjct: 180 SQEGCDVVLVDTAGRLHVDDALMEELERMKAAV------VPGEILLVVDAMTGQSAVEVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E FH   G TG I TK+DG  +GG  + I+     P+ F GVGE ++ LEPF     ++ 
Sbjct: 234 EAFHGRLGLTGAIFTKLDGDTKGGAALSILSVAGCPIKFAGVGEKLDALEPFYPDRMASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|329123887|ref|ZP_08252441.1| signal recognition particle protein [Haemophilus aegyptius ATCC
           11116]
 gi|327468494|gb|EGF13975.1| signal recognition particle protein [Haemophilus aegyptius ATCC
           11116]
          Length = 462

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 159/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQSELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A EA   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFYPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|56708058|ref|YP_169954.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670529|ref|YP_667086.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. tularensis FSC198]
 gi|224457145|ref|ZP_03665618.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370544|ref|ZP_04986549.1| signal recognition particle protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874860|ref|ZP_05247570.1| signal recognition particle protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604550|emb|CAG45597.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320862|emb|CAL08980.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151568787|gb|EDN34441.1| signal recognition particle protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840859|gb|EET19295.1| signal recognition particle protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159253|gb|ADA78644.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 458

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L ++ ++  L D+   L+ +D+ + V +K +  +  K   
Sbjct: 2   FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I K L   + P N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +   A K A+
Sbjct: 121 AKYLKEQHNKKVMVVSADVYRPAAIDQLRTLANSLNVEFFKSDASQQPEDIVTAAIKTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH ++ +M  I ++ ++ K      P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|30249431|ref|NP_841501.1| Signal recognition particle GTPase ffh protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138794|emb|CAD85371.1| Signal recognition particle GTPase ffh protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 448

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 159/305 (52%), Gaps = 28/305 (9%)

Query: 28  LKEGITDIISSRR---------LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           L E ++D+I + R         + D +RE +   LI +D+ + V +  +E++  +    +
Sbjct: 5   LTERLSDVIKTLRGEARLTESNIQDALRE-VRMALIEADVALPVIKIFIEQVKQRAIGHE 63

Query: 79  V----SVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           V    S  + L  V   +H+ L+ +        N + +  P VIL+ G+ G GKTT  GK
Sbjct: 64  VLDKLSPGQALIGV---VHEELVAIMGGDKAELNLNVAP-PAVILMAGLQGAGKTTSSGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K + D   KV+L + D +R AAIDQL + A++T ADF   + G   A +   A   A+
Sbjct: 120 LAKWLMDQKKKVLLVSCDVYRPAAIDQLALLAEQTGADFFPVQTGRQPAEICTAALDFAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRL  +  +M  I ++ ++LK      P   L V+DA  GQ+A+   +
Sbjct: 180 KHHHDVVIVDTAGRLGIDEAMMREISQLEQLLK------PAETLFVVDAMQGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F  V   TG+I+TK+DG ARGG  + +      P+ F GV E +N LEPF     ++ I
Sbjct: 234 AFAEVLPLTGVILTKLDGDARGGAALSVRHITGKPIKFAGVAEKLNGLEPFYPDRMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|28493523|ref|NP_787684.1| cell division protein FtsY [Tropheryma whipplei str. Twist]
 gi|28572365|ref|NP_789145.1| SRP54-type protein [Tropheryma whipplei TW08/27]
 gi|28410496|emb|CAD66882.1| putative SRP54-type protein [Tropheryma whipplei TW08/27]
 gi|28476565|gb|AAO44653.1| cell division protein FtsY [Tropheryma whipplei str. Twist]
          Length = 222

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 126/207 (60%), Gaps = 3/207 (1%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            ++ P VIL+VGVNGVGKT   GKL+  +   G KV+LAA DTFR+AA++QL IWA R  
Sbjct: 18  LTNHPSVILIVGVNGVGKTATAGKLANLLHLRGKKVLLAAADTFRAAAVEQLSIWAQRAG 77

Query: 167 ADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
            + +       D A++AY + K+A     DV++IDTAGRLHN + LMA + ++ RV ++L
Sbjct: 78  VEIITPPKPRIDPASVAYSSVKKAIDDNYDVVVIDTAGRLHNKANLMAELERIARVTEKL 137

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              +   VL VLDATTGQN L Q   F      TG++++K D +A+ G +  +  +  +P
Sbjct: 138 --VSIDEVLLVLDATTGQNGLTQARSFLEAVSVTGIVLSKTDSSAKAGFIFQVQESTGVP 195

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITG 312
           V  +G GE I+D+  F    F A I G
Sbjct: 196 VKLIGTGEAIDDIAGFAPYAFVAQIFG 222


>gi|68248720|ref|YP_247832.1| Signal recognition particle protein [Haemophilus influenzae
           86-028NP]
 gi|319896550|ref|YP_004134743.1| signal recognition particle protein [Haemophilus influenzae F3031]
 gi|68056919|gb|AAX87172.1| Signal recognition particle protein [Haemophilus influenzae
           86-028NP]
 gi|317432052|emb|CBY80401.1| Signal recognition particle protein [Haemophilus influenzae F3031]
          Length = 459

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 159/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A EA   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|145635508|ref|ZP_01791208.1| Signal recognition particle protein [Haemophilus influenzae PittAA]
 gi|229845502|ref|ZP_04465631.1| Signal recognition particle protein [Haemophilus influenzae 6P18H1]
 gi|145267273|gb|EDK07277.1| Signal recognition particle protein [Haemophilus influenzae PittAA]
 gi|229811605|gb|EEP47305.1| Signal recognition particle protein [Haemophilus influenzae 6P18H1]
          Length = 462

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 159/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A EA   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|145633682|ref|ZP_01789408.1| Signal recognition particle protein [Haemophilus influenzae 3655]
 gi|144985442|gb|EDJ92263.1| Signal recognition particle protein [Haemophilus influenzae 3655]
          Length = 459

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 159/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A EA   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|184200702|ref|YP_001854909.1| cell division protein FtsY [Kocuria rhizophila DC2201]
 gi|183580932|dbj|BAG29403.1| signal recognition particle receptor [Kocuria rhizophila DC2201]
          Length = 372

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/281 (40%), Positives = 166/281 (59%), Gaps = 20/281 (7%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY----AKDVSV------QRVLY 86
           S  R+D    +E+ED L+ +D+G   + ++VE L  KR      KD S       + +L 
Sbjct: 95  SRERIDQDTWDEIEDTLLMADLGTDASLELVENL-KKRVRVDGTKDPSQLKAMLREEMLA 153

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            V   + + L   S P       +P V+LVVGVNGVGKTT +GKL++ +      VML A
Sbjct: 154 LVDPTLDRSLRTESAP------GKPAVVLVVGVNGVGKTTTVGKLARVLVAEDKDVMLGA 207

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
            DTFR+AA DQL+ W  R     V SE  G+D A++AY+A +    ++ DV+++DTAGRL
Sbjct: 208 ADTFRAAAADQLETWGARVGVPTVRSEQEGADPASVAYDAVRAGIEQESDVVLVDTAGRL 267

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N + LM  +GK+ RV+++    A   VL V+DATTGQN + Q  +F      TG+++TK
Sbjct: 268 QNKAGLMDQLGKVKRVIEKA--AAVDEVLLVIDATTGQNGMTQARVFAEAVDITGIVLTK 325

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +DGTA+GG ++ I     +PV  +G+GEG +DL PF A+ F
Sbjct: 326 LDGTAKGGIVVAIQRGLGVPVKLIGLGEGPDDLAPFNAEQF 366


>gi|302761974|ref|XP_002964409.1| hypothetical protein SELMODRAFT_81276 [Selaginella moellendorffii]
 gi|300168138|gb|EFJ34742.1| hypothetical protein SELMODRAFT_81276 [Selaginella moellendorffii]
          Length = 494

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 147/285 (51%), Gaps = 23/285 (8%)

Query: 43  DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA--------KDVSVQRVLYDVSEL 91
           + ++E L+D+   L+ +D+ + V +K+V  +  K            D  + +V+YD  EL
Sbjct: 31  ENMKEPLQDIRRALLEADVSLPVVRKLVGSIAEKAVGTGVIRGVRPDQQLVKVVYD--EL 88

Query: 92  IHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           I  M     +  + +FS  P  VIL+ G+ GVGKTT  GKL+  M   G   ML A D +
Sbjct: 89  ISLMG---GQAAHIEFSGTPPTVILMAGLQGVGKTTACGKLALYMKKKGKSCMLVATDIY 145

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI+QL     +       +        +A    K+A+ K  DVLI+DTAGRL  ++ 
Sbjct: 146 RPAAIEQLITLGKQVEVPVFEAGTELSPVEIAKRGLKEAKEKGTDVLIVDTAGRLQVDAT 205

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M  + +M +VL       P+ VL V+DA TGQ A   V  F+   G TG IMTK+DG +
Sbjct: 206 MMDELKQMKKVLN------PNEVLLVVDAMTGQEAAALVSAFNLEVGITGAIMTKVDGDS 259

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + +      P+ F+G GEG+N LE F     ++ I G  D
Sbjct: 260 RGGAALSVREVSGKPIKFVGEGEGMNALELFYPDRMASRILGMGD 304


>gi|302522143|ref|ZP_07274485.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           SPB78]
 gi|302431038|gb|EFL02854.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           SPB78]
          Length = 408

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/326 (34%), Positives = 174/326 (53%), Gaps = 34/326 (10%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 98  EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQ 157

Query: 65  KIVEELLTK-------------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           ++VE L  +                ++  +  V  D    +H    P           +P
Sbjct: 158 ELVERLRERVRVLGTRTTDELRTLLREELLTLVGADTDRTVHTEAAP----------DKP 207

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            +++VVGVNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V 
Sbjct: 208 GIVMVVGVNGTGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVR 267

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP- 230
              G D A++A++A K+  A+K D ++IDTAGRLH  + LM  +GK+ RV+++    AP 
Sbjct: 268 GPEGGDPASIAFDAVKEGIAEKADAVLIDTAGRLHTKTGLMDELGKVKRVVEK---QAPV 324

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             VL VLDATTGQN L     F A +     +   ++T +DGTA+GG +I +     +PV
Sbjct: 325 DEVLLVLDATTGQNGLVS---FSASSTRSCRSPAFVLTNLDGTAKGGIVIAVQRELGVPV 381

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITG 312
             +G+GEG +DL PF    F   + G
Sbjct: 382 KLIGLGEGADDLAPFEPGAFVDALIG 407


>gi|134301872|ref|YP_001121841.1| signal recognition particle protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|254372796|ref|ZP_04988285.1| hypothetical protein FTCG_00366 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374256|ref|ZP_04989738.1| signal recognition particle protein [Francisella novicida
           GA99-3548]
 gi|134049649|gb|ABO46720.1| signal recognition particle protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151570523|gb|EDN36177.1| hypothetical protein FTCG_00366 [Francisella novicida GA99-3549]
 gi|151571976|gb|EDN37630.1| signal recognition particle protein [Francisella novicida
           GA99-3548]
 gi|328676930|gb|AEB27800.1| Signal recognition particle, subunit Ffh SRP54 [Francisella cf.
           novicida Fx1]
          Length = 458

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L ++ ++  L D+   L+ +D+ + V +K +  +  K   
Sbjct: 2   FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I K L   + P N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +   A K A+
Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPEDIVTAAIKTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH ++ +M  I ++ ++ K      P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|302768411|ref|XP_002967625.1| hypothetical protein SELMODRAFT_169303 [Selaginella moellendorffii]
 gi|300164363|gb|EFJ30972.1| hypothetical protein SELMODRAFT_169303 [Selaginella moellendorffii]
          Length = 462

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/283 (35%), Positives = 146/283 (51%), Gaps = 23/283 (8%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA--------KDVSVQRVLYDVSELIH 93
           ++E L+D+   L+ +D+ + V +K+V  +  K            D  + +V+YD  ELI 
Sbjct: 1   MKEPLQDIRRALLEADVSLPVVRKLVGSIAEKAVGTGVIRGVRPDQQLVKVVYD--ELIS 58

Query: 94  KMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            M     +  + +FS  P  VIL+ G+ GVGKTT  GKL+  M   G   ML A D +R 
Sbjct: 59  LMG---GQAAHIEFSGTPPTVILMAGLQGVGKTTACGKLALYMKKKGKSCMLVATDIYRP 115

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL     +       +        +A    K+A+ K  DVLI+DTAGRL  ++ +M
Sbjct: 116 AAIEQLITLGKQVEVPVFEAGTELSPVEIAKRGLKEAKEKGTDVLIVDTAGRLQVDATMM 175

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + +M +VL       P+ VL V+DA TGQ A   V  F+   G TG IMTK+DG +RG
Sbjct: 176 DELKQMKKVLN------PNEVLLVVDAMTGQEAAALVSAFNLEVGITGAIMTKVDGDSRG 229

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F+G GEG+N LE F     ++ I G  D
Sbjct: 230 GAALSVQEVSGKPIKFVGEGEGMNALELFYPDRMASRILGMGD 272


>gi|118497435|ref|YP_898485.1| signal recognition particle GTPase [Francisella tularensis subsp.
           novicida U112]
 gi|195536126|ref|ZP_03079133.1| signal recognition particle protein [Francisella tularensis subsp.
           novicida FTE]
 gi|118423341|gb|ABK89731.1| signal recognition particle GTPase [Francisella novicida U112]
 gi|194372603|gb|EDX27314.1| signal recognition particle protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 458

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L ++ ++  L D+   L+ +D+ + V +K +  +  K   
Sbjct: 2   FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I K L   + P N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +   A K A+
Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPEDIVTAAIKTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH ++ +M  I ++ ++ K      P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|208779229|ref|ZP_03246575.1| signal recognition particle protein [Francisella novicida FTG]
 gi|208745029|gb|EDZ91327.1| signal recognition particle protein [Francisella novicida FTG]
          Length = 458

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L ++ ++  L D+   L+ +D+ + V +K +  +  K   
Sbjct: 2   FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I K L   + P N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +   A K A+
Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPEDIVTAAIKTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH ++ +M  I ++ ++ K      P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|256379939|ref|YP_003103599.1| signal recognition particle-docking protein FtsY [Actinosynnema
           mirum DSM 43827]
 gi|255924242|gb|ACU39753.1| signal recognition particle-docking protein FtsY [Actinosynnema
           mirum DSM 43827]
          Length = 490

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 157/271 (57%), Gaps = 11/271 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           ++ED L+ +D+G AV  ++VE L  +  A+ V   R       L+ ++L+    P     
Sbjct: 223 DVEDTLLMADLGAAVTMQVVEALRQQIAARGV---RTPEQARTLLREVLVDALHPSMDRS 279

Query: 108 SH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
            H      +P V+LVVGVNGVGKTT  GKL++ +   G  V+L A DTFR+AA DQL  W
Sbjct: 280 LHALPHDGKPAVLLVVGVNGVGKTTTTGKLARVLIADGRTVLLGAADTFRAAAADQLATW 339

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             R  A  V    G D A++A++A KQ   + VD +++DTAGRLH  + LM  +GK+ RV
Sbjct: 340 GSRVGARTVRGPEGGDPASVAFDAVKQGVGEGVDTVLVDTAGRLHTKTGLMDELGKVKRV 399

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +++        VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG +  +   
Sbjct: 400 VEKQ--TKVDEVLLVLDATTGQNGLTQARVFSEVVDVTGIVLTKLDGTAKGGIVFQVQRE 457

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             +PV  +G+GEG +DL PF    F   + G
Sbjct: 458 LGVPVKLVGLGEGADDLAPFEPAAFVDALLG 488


>gi|118575528|ref|YP_875271.1| signal recognition particle GTPase [Cenarchaeum symbiosum A]
 gi|118194049|gb|ABK76967.1| signal recognition particle GTPase [Cenarchaeum symbiosum A]
          Length = 422

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 143/278 (51%), Gaps = 20/278 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW- 105
           +ELE  L+ SD+   VA  I E+L  +     V    +   V E +  ++  L   F+  
Sbjct: 3   DELEISLLESDVAAEVADSIKEDLKGRLVGTSVDKHVIGEHVRESLIGIISDL---FDGA 59

Query: 106 ---DFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              D   R       P++I+ VG+NG GKTT + K++  + D+ L V+LAA DTFR+ AI
Sbjct: 60  GAVDLLERIRAKKDDPYIIVFVGINGTGKTTSVAKIAHMLRDSKLSVVLAAADTFRAGAI 119

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+  A R +   V    GSD AA+A +A   A++  VD +++DTAGR+  +  LM  I
Sbjct: 120 EQLREHAKRLNLKIVAQNYGSDPAAVARDAVLYARSHGVDCVLVDTAGRMQTSKNLMEQI 179

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K+IRV++      P   + V D+  G + + Q   FH        I+TK D  ARGG  
Sbjct: 180 EKIIRVVQ------PDLKIFVGDSLAGNDTVNQAGEFHEHIKFDCSILTKNDADARGGAA 233

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           + IV T   PV ++G G+   D+ PF  + F   + G 
Sbjct: 234 LSIVKTTSTPVIYVGTGQEYGDIRPFSKETFIETVFGS 271


>gi|240947853|ref|ZP_04752293.1| signal recognition particle GTPase [Actinobacillus minor NM305]
 gi|240297815|gb|EER48251.1| signal recognition particle GTPase [Actinobacillus minor NM305]
          Length = 463

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 159/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLKNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQAELEKAMGEANEGLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVEIAEAALKHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|332183991|gb|AEE26245.1| Signal recognition particle, subunit Ffh SRP54 [Francisella cf.
           novicida 3523]
          Length = 458

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L ++ ++  L D+   L+ +D+ + V +K +  +  K   
Sbjct: 2   FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I K L   + P N   +  P +IL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAIILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +   A K A+
Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPQDIVTAAIKTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH ++ +M  I ++ ++ K      P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|322513256|ref|ZP_08066380.1| signal recognition particle protein [Actinobacillus ureae ATCC
           25976]
 gi|322120963|gb|EFX92810.1| signal recognition particle protein [Actinobacillus ureae ATCC
           25976]
          Length = 498

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 159/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 35  FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERAIG 94

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 95  EEVNKSLTPGQEFLKVVQSELEKAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 153

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 154 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVEIAELALKHAK 213

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    +
Sbjct: 214 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTGQDAANTAK 267

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 268 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 327

Query: 311 TGCLD 315
            G  D
Sbjct: 328 LGMGD 332


>gi|126460434|ref|YP_001056712.1| signal recognition particle-docking protein FtsY [Pyrobaculum
           calidifontis JCM 11548]
 gi|126250155|gb|ABO09246.1| signal recognition particle-docking protein FtsY [Pyrobaculum
           calidifontis JCM 11548]
          Length = 305

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 147/282 (52%), Gaps = 32/282 (11%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTK-------RYA-KDVSVQRVLYDVSELIH 93
           V E + DL   L+ SD+ V VA  +VEEL  +       R+  K+ +V+R + D      
Sbjct: 30  VEEFVTDLYLELVESDVAVEVADALVEELKRRLVGLKVPRFGDKEGAVKRAVVD------ 83

Query: 94  KMLMPLSKPFNWDFSH---------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
            +L  LS   + DF           RP V++ +G NG GKTT + KL+  + + G  V+ 
Sbjct: 84  SVLQILSDVPDVDFYEEGGKLLDRARPVVVMFLGPNGYGKTTTLAKLAYHLMERGYTVVG 143

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+ A +QL+    R     +    G+D A++A++A + A+++    ++IDTAGR
Sbjct: 144 AAADTFRAGAREQLEEHGRRVGFKVIGGPYGADPASVAFDAVQHARSRGHHFVLIDTAGR 203

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           +H ++ LM  + K+ RV +      PH  + V DA  G  AL     +       G+I T
Sbjct: 204 MHTDANLMEELRKIQRVAE------PHFSIFVFDAQLGNEALEIARYYSKYVRIDGMIAT 257

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           K+D   +GG ++  + T K PVYFLGVG+   DL  FV  D+
Sbjct: 258 KVDAYPKGGSILTFMYTLKRPVYFLGVGQSYKDLVKFVKLDY 299


>gi|167627998|ref|YP_001678498.1| signal recognition particle protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597999|gb|ABZ87997.1| signal recognition particle protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 458

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L ++ ++  L D+   L+ +D+ + V +K +E +  K   
Sbjct: 2   FTSLSDKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIENIKQKAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I + L   + P N   +  P +IL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIERALGEEAVPINLK-TQPPAIILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +  EA + A+
Sbjct: 121 AKYLKEQYKKKVMVVSADVYRPAAIDQLRTLANSLNIEFFESDTSQKPDYIVTEAIRAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH +S +M  I ++ ++        P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDSNMMDEIKQIHKIAN------PIETFFTVDSMTGQDAAITAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLG GE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGTGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|13541823|ref|NP_111511.1| signal recognition particle protein Srp54 [Thermoplasma volcanium
           GSS1]
 gi|21362960|sp|Q979Y8|SRP54_THEVO RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|14325260|dbj|BAB60164.1| signal recognition particle protein srp54 [Thermoplasma volcanium
           GSS1]
          Length = 455

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 22/304 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S S  L+E I  I  S  +D      + ++L+ +L+++D+ V     I +E+  +   
Sbjct: 3   LESLSSSLRETIRKITGSTYIDKNTVKEISKDLQRILLKADVNVQTVLNITKEMERRALE 62

Query: 77  KD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           +   V +    Y V  +  ++L  L +P N +   +P  I++VG+ G GKTT  GKLS+ 
Sbjct: 63  EKPPVGMAHQDYMVKIIYEELLKILGEPSNVEL--KPQTIMLVGLYGHGKTTSAGKLSRF 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL---AYEAFKQAQA 191
               GL   L A D  R AA +QL+  A+  +A F       D   +     E  K AQ 
Sbjct: 121 FMKKGLSAGLIAADVHRYAAYEQLQQIAESVNAKFYGDPKEKDPVKIIKNGLEVLKDAQV 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K     IIDT+GR   +S L+  I ++   +K      P  VL V+DAT GQ A  + + 
Sbjct: 181 K-----IIDTSGRDSLDSDLIEEIRRIKEAVK------PDQVLMVIDATMGQQAGPESKA 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            +   G TG+I+TKMDGTA+GGG +  V   ++P+YF+G GE ++D+E F  K F + + 
Sbjct: 230 INDAVGVTGIIITKMDGTAKGGGALSAVAKMRVPIYFIGTGEHMDDMEIFDPKKFLSRLL 289

Query: 312 GCLD 315
           G  D
Sbjct: 290 GLGD 293


>gi|219871638|ref|YP_002476013.1| signal recognition particle GTPase [Haemophilus parasuis SH0165]
 gi|219691842|gb|ACL33065.1| signal recognition particle GTPase [Haemophilus parasuis SH0165]
          Length = 460

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 159/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLKNITGKGRLTEDNIKDTLREVRIALLEADVALPVVREFINKVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQAELEKAMGEANEGLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAALKHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|161527904|ref|YP_001581730.1| signal recognition particle-docking protein FtsY [Nitrosopumilus
           maritimus SCM1]
 gi|160339205|gb|ABX12292.1| signal recognition particle-docking protein FtsY [Nitrosopumilus
           maritimus SCM1]
          Length = 513

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 115/206 (55%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P +IL +G+NG GKTT + K++  +      V++AA DTFR+ AI+QL+   +R +   
Sbjct: 104 QPFLILFLGINGTGKTTSLAKVAHMLQQEKYSVVVAAADTFRAGAIEQLREHTNRLNLKL 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     SD AA+A +A   A++ K DV++IDTAGR+  +  LM  I K+ +V+       
Sbjct: 164 VAQNYNSDPAAVARDAVLYAKSHKTDVVLIDTAGRMQTSENLMQQIEKITKVVN------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   + V D+  G + + Q   FHA     G I+TK D  ARGG  + IV     PV ++
Sbjct: 218 PDLKIFVGDSLAGNDTVNQAREFHAHTNFHGSILTKSDADARGGAALSIVKVTSTPVMYV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVG+   DL+PF  K F   + G LD
Sbjct: 278 GVGQEYPDLKPFDKKTFLETVFGNLD 303


>gi|52840645|ref|YP_094444.1| signal recognition particle protein Ffh [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52627756|gb|AAU26497.1| signal recognition particle protein Ffh [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 458

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 156/290 (53%), Gaps = 24/290 (8%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           R  +D ++  L ++   LI +D+ + V ++ +E++  K   ++V        +  ++++D
Sbjct: 21  RLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLGQEVLTSLNPDQAFIKIVHD 80

Query: 88  VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLA 145
             ELIH M    ++    D+ +  P V L+ G+ G GKTT   KL++ + +    KVM+A
Sbjct: 81  --ELIHVMG---NERVELDYKTQPPAVFLMAGLQGSGKTTSTAKLARYLKETENKKVMMA 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           + D +R AAI QLK+ A++    F  S+       +A +A + A+ + VDVLI+DTAGRL
Sbjct: 136 SVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESARKQYVDVLILDTAGRL 195

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H +  +M+ I  + + +       P   L V+D+ TGQ+A    + FH     TG+I+TK
Sbjct: 196 HVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAKAFHEALPLTGVILTK 249

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            DG ARGG  + +      P+ F+G GE I  LEPF  +  ++ I G  D
Sbjct: 250 TDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERIASRILGMGD 299


>gi|288574569|ref|ZP_06392926.1| signal recognition particle protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570310|gb|EFC91867.1| signal recognition particle protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 450

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/277 (35%), Positives = 153/277 (55%), Gaps = 20/277 (7%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-------QRVLYDVSELIHKMLMPLS 100
           E+   L+ +D+   V + +VE +  +R A + SV       Q+V+  V E +  ++    
Sbjct: 33  EVRRALLEADVNYKVVKGLVENI--RRRAMERSVLDSITPGQQVVAVVYEELMDLMGSEP 90

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           KP        P ++++VG+ G GKTT   KL+K++S  G K ++ A D  R AA+DQL++
Sbjct: 91  KPLTIS-PKPPTLMMMVGLQGGGKTTSTVKLAKRLS-KGHKPLVVACDLRRPAAVDQLRV 148

Query: 161 WADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM- 218
            A+     F   E G SD   +   A + A+ + +DV++ DTAGRL  +  +MA +  M 
Sbjct: 149 LAESAGVGFYGPEKGESDVLNVIDGALRYARDRLMDVILFDTAGRLTVDDEMMAELDAMK 208

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            R+       APH +L V+DA TGQ A+   E FH+    TG++++K+DG ARGG  + +
Sbjct: 209 ARI-------APHEILLVVDAMTGQEAVSVSEAFHSRMDLTGVVLSKVDGDARGGAALAV 261

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + T  +P+ F GVGEGI+ LE F AK  +  I G  D
Sbjct: 262 LATTGVPIKFAGVGEGIDALEVFDAKRMAERIMGMGD 298


>gi|113461570|ref|YP_719639.1| signal recognition particle subunit FFH/SRP54 (srp54) [Haemophilus
           somnus 129PT]
 gi|112823613|gb|ABI25702.1| signal recognition particle subunit FFH/SRP54 (srp54) [Haemophilus
           somnus 129PT]
          Length = 458

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFIHQVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQTELEKAMGVANEKLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    K+M+ + D +R AAI QL+  A     DF  S +      +A  A  +A+
Sbjct: 121 AKFLKENYKKKIMVVSVDVYRPAAIKQLETLAQSIGVDFYPSNVSQKPVEIARTALAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDDTMMEEIQQIHTVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGIILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|303253167|ref|ZP_07339316.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248810|ref|ZP_07530823.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307262237|ref|ZP_07543886.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|302647849|gb|EFL78056.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854737|gb|EFM86927.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306868000|gb|EFM99827.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 463

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  L  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVNKSLTPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++ RVL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  N LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTNALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|163839816|ref|YP_001624221.1| signal recognition particle receptor [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953292|gb|ABY22807.1| signal recognition particle receptor [Renibacterium salmoninarum
           ATCC 33209]
          Length = 395

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 118/278 (42%), Positives = 172/278 (61%), Gaps = 14/278 (5%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
           SS ++D+GV EELE+ L+ +DIG   + ++VE L   R    +   R   +V  ++ + L
Sbjct: 118 SSDKIDEGVWEELEETLLLADIGTQPSLELVEIL---RERVKIMGSRSPQEVQAMLREEL 174

Query: 97  MPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           + L  P   D S         P ++LVVGVNGVGKTT +GKL++ +      V+L A DT
Sbjct: 175 IKLVDP-GMDRSLAVSRQGELPAIVLVVGVNGVGKTTTVGKLARVLVAEDKDVLLGAADT 233

Query: 150 FRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           FR+AA +QL  W  R     V S++ G+D A++A+EA K    ++VDV++IDTAGRL N 
Sbjct: 234 FRAAAAEQLATWGARVGVPTVKSDVDGADPASVAFEAVKSGIEQEVDVVMIDTAGRLQNK 293

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  +GK+ RV+++L       VL VLDATTGQN L Q ++F  V   TG+++TK+DG
Sbjct: 294 VGLMDELGKVKRVIEKL--ANVGEVLLVLDATTGQNGLTQAKVFSEVVDITGIVLTKLDG 351

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TA+GG ++ I  +  +PV  +G+GEG +DL PF A+ F
Sbjct: 352 TAKGGIVVAIQKSLGVPVKLVGLGEGADDLAPFDAEQF 389


>gi|145591970|ref|YP_001153972.1| GTP-binding signal recognition particle [Pyrobaculum arsenaticum
           DSM 13514]
 gi|158514165|sp|A4WLQ3|SRP54_PYRAR RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|145283738|gb|ABP51320.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 433

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/232 (38%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           VLY+  EL+   LM   +P  +  + +P+++L++GV G GKTT   KL++ +   G KV 
Sbjct: 76  VLYE--ELVK--LMGGEQPAEFKPTKKPYIVLLLGVEGSGKTTTSAKLARYLMKRGYKVG 131

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           +   DT R AA DQL+  A++  A F     G DA  +A      A  K VDVLIIDTAG
Sbjct: 132 MVETDTIRPAAFDQLRQLAEKIGAPFYGERDGKDAVEIARRGV--ANLKGVDVLIIDTAG 189

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R  N   L+  +  +       D   P  V+ V+DAT G+ A  Q E F        +I+
Sbjct: 190 RHRNEEALLQEVKAI------YDAVNPDEVVLVVDATVGKLAAAQAEAFMKYLPIHTVII 243

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TKMD TARGGG +  V      V F+GVGE + +LEPF  + F A + G  D
Sbjct: 244 TKMDSTARGGGALAAVAKTGARVKFIGVGEDVEELEPFNPRKFVARLLGMGD 295


>gi|241668552|ref|ZP_04756130.1| signal recognition particle protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877087|ref|ZP_05249797.1| signal recognition particle protein ffh [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843108|gb|EET21522.1| signal recognition particle protein ffh [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 458

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L ++ ++  L D+   L+ +D+ + V +K +E +  K   
Sbjct: 2   FTSLSDKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIENIKQKAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I + L   + P N   +  P +IL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIERALGEEAVPINLK-TQPPAIILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +  EA + A+
Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNIEFFESDTSQKPDYIVTEAIRAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH +S +M  I ++ ++        P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDSNMMDEIKQIHKIAN------PIETFFTVDSMTGQDAAITAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLG GE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGTGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|255578951|ref|XP_002530328.1| signal recognition particle protein, putative [Ricinus communis]
 gi|223530132|gb|EEF32044.1| signal recognition particle protein, putative [Ricinus communis]
          Length = 572

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 157/308 (50%), Gaps = 21/308 (6%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----- 70
           +LT G  S   KLK   T  ++   + + +R+ +   L+ +D+ + V ++ V+ +     
Sbjct: 88  QLTTGLESAWSKLKGAET--LTKENIAEPMRD-MRRALLEADVSLPVVRRFVQSVTDEAI 144

Query: 71  ---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
              L +    D  + ++++D  EL+  M   +S+     +S  P VIL+ G+ GVGKTTV
Sbjct: 145 GVGLIRGVKPDQQLVKIVHD--ELVKLMGGEVSELVFAKYS--PTVILLAGLQGVGKTTV 200

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+  +   G   ML AGD +R AAIDQL I  ++              + +A    +
Sbjct: 201 CAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTEGTEVKPSEIAKRGLE 260

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+ K +DV+I+DTAGRL  +  +M  + ++ RVL       P  VL V+DA TGQ A  
Sbjct: 261 EAKKKNIDVVIVDTAGRLQIDKGMMDELKEVKRVLN------PTEVLLVVDAMTGQEAAA 314

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF     +
Sbjct: 315 LVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMA 374

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 375 GRILGMGD 382


>gi|167854879|ref|ZP_02477655.1| signal recognition particle protein (sigma-54 like protein)
           [Haemophilus parasuis 29755]
 gi|167853946|gb|EDS25184.1| signal recognition particle protein (sigma-54 like protein)
           [Haemophilus parasuis 29755]
          Length = 463

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 159/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLKNITGKGRLTEDNIKDTLREVRIALLEADVALPVVREFINKVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQTELEKAMGEANEGLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAALKHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|323302581|gb|EGA56388.1| Srp54p [Saccharomyces cerevisiae FostersB]
          Length = 452

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 143/282 (50%), Gaps = 33/282 (11%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS------------VQRVLYD-VSELI------H 93
           L+ SD+ +A+  K+   + ++  +++ S            +Q+ ++D + +L+       
Sbjct: 40  LLESDVNIALVSKLRNNIRSQLLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEE 99

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K  +P  +  N        +I+ VG+ G GKTT   KL+   S  G KV L   DTFR+ 
Sbjct: 100 KAFVPKKRKTN--------IIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFRAG 151

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQLK  A R    F  S   +D A +A E   + + +K D++I+DT+GR H    L  
Sbjct: 152 AFDQLKQNAIRARIPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQ 211

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++  V+K      P+  + VLDA+ GQ A +Q + F   +    +I+TKMDG ARGG
Sbjct: 212 EMIEISNVIK------PNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGG 265

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G I  V     P+ F+G GE I+DLE F  K F + + G  D
Sbjct: 266 GAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKLLGIGD 307


>gi|54026136|ref|YP_120378.1| putative signal recognition particle [Nocardia farcinica IFM 10152]
 gi|54017644|dbj|BAD59014.1| putative signal recognition particle [Nocardia farcinica IFM 10152]
          Length = 514

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/267 (42%), Positives = 161/267 (60%), Gaps = 13/267 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKP 102
           EE+ED L+ +D+G A    +VE L  +  A+ V      ++VL DV  L+  +   L + 
Sbjct: 248 EEIEDTLVLADLGTASTTAVVERLREEMAARSVRTPEQARQVLRDV--LVEALRPELDRS 305

Query: 103 FN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                    P ++LVVGVNG GKTT  GKL++ +   G +V+L A DTFR+AA DQL+ W
Sbjct: 306 IRALPHPDHPAILLVVGVNGTGKTTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQTW 365

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            +R  A+ V  + G+D AA+A++A      + VD ++IDTAGRLH  + LM  +GK+ RV
Sbjct: 366 GERVGAETVRGKEGADPAAVAFDAVAAGIERGVDAVLIDTAGRLHTKTGLMDELGKVKRV 425

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +++    A   VL VLDAT GQN L Q  +F  V   TG+++TK+DGTA+GG  I   V 
Sbjct: 426 VEKK--AAVDEVLLVLDATVGQNGLMQARVFAEVVDITGVVLTKLDGTAKGG--IVFQVQ 481

Query: 282 HK--IPVYFLGVGEGINDLEPFVAKDF 306
           H+  +PV  +G+GEG +DL PF A  F
Sbjct: 482 HELGVPVKLVGLGEGADDLAPFEAGAF 508


>gi|167045193|gb|ABZ09853.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine crenarchaeote HF4000_APKG8O8]
          Length = 494

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 146/274 (53%), Gaps = 23/274 (8%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS---ELIHKMLMPL 99
           D ++ +L+  LI    GV V +K +E+ + K   +++S    ++D +   +LI  + +  
Sbjct: 48  DNIKSDLKKKLI----GVKVNKKEIEDFVRKSLIENISS---MFDEAGSFDLISDIKLKT 100

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
                      P++IL VG+NG GKTT I K++  +    + +++AA DTFR+ AI+QL+
Sbjct: 101 D-------PQDPYLILFVGINGTGKTTTIAKIASLLQKNKISLVVAASDTFRAGAIEQLR 153

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
              D+ +   V    GSD AA+A++A   A++ KVD ++ID+AGR+  N  LM  I K+ 
Sbjct: 154 GHTDKLNLKLVAQNYGSDPAAVAHDALLYAKSHKVDCVLIDSAGRMQTNKNLMEQITKIS 213

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           +V+       P   + V D+  G + + Q   F+      G ++TK D  +RGG  + IV
Sbjct: 214 KVVN------PDLKIFVGDSLAGNDTVSQAREFYKHTNFDGAVLTKSDADSRGGAALSIV 267

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
              K PV ++G G+G +DLE F    F   + G 
Sbjct: 268 AVTKKPVVYIGTGQGYDDLELFNKDTFLEKVFGS 301


>gi|54296436|ref|YP_122805.1| hypothetical protein lpp0467 [Legionella pneumophila str. Paris]
 gi|53750221|emb|CAH11615.1| hypothetical protein lpp0467 [Legionella pneumophila str. Paris]
          Length = 458

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 163/309 (52%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L     ++    RL +D ++  L ++   LI +D+ + V ++ +E++  K   
Sbjct: 2   FENLTERLTRTFKNLRGQGRLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLG 61

Query: 77  KDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTV 127
           ++V        +  ++++D  ELIH M     +    D+ +  P V L+ G+ G GKTT 
Sbjct: 62  QEVLTSLNPDQAFIKIVHD--ELIHVMG---DERVELDYKTQPPAVFLMAGLQGSGKTTS 116

Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL++ + +    KVM+A+ D +R AAI QLK+ A++    F  S+       +A +A 
Sbjct: 117 TAKLARYLKETENKKVMMASVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKAL 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+ + VDVLI+DTAGRLH +  +M+ I  + + +       P   L V+D+ TGQ+A 
Sbjct: 177 ESARKQYVDVLILDTAGRLHVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + FH     TG+I+TK DG ARGG  + +      P+ F+G GE I  LEPF  +  
Sbjct: 231 NTAKAFHEALPLTGVILTKTDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERI 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|76800746|ref|YP_325754.1| signal recognition particle receptor SRalpha [Natronomonas
           pharaonis DSM 2160]
 gi|76556611|emb|CAI48182.1| signal recognition particle receptor SRalpha [Natronomonas
           pharaonis DSM 2160]
          Length = 368

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 137/255 (53%), Gaps = 19/255 (7%)

Query: 57  DIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-- 110
           D+ ++VAQ+I     EEL+ +   +  S ++V   V   I + L  +     +DF  R  
Sbjct: 111 DVEMSVAQEITDRIREELVGETRKQVESGEQV---VERAIAEALRDVISVGQFDFESRIA 167

Query: 111 ----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               P  I+  GVNGVGKTT I KL++   + G   +LA GDT+R+ A +Q++  AD   
Sbjct: 168 DAEKPVTIVFTGVNGVGKTTSIAKLARWFEERGHSSVLANGDTYRAGANEQIEEHADALD 227

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +  E G D AA+ Y+A + A+A  VDV++ DTAGRLH    LMA + K+ RV+    
Sbjct: 228 KKIITHEQGGDPAAVIYDAVEYAEANDVDVVLGDTAGRLHTADDLMAQLEKIDRVVD--- 284

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V +A  GQ+A  + + F+  A   G I+TK D  ++GG  I I      P+
Sbjct: 285 ---PDLTLFVDEAVAGQDATNRAKEFNDAAEIDGAILTKADADSQGGAAISIAHVTGKPI 341

Query: 287 YFLGVGEGINDLEPF 301
            FLG G+G +D+E F
Sbjct: 342 LFLGTGQGYDDIERF 356


>gi|307609209|emb|CBW98673.1| hypothetical protein LPW_04821 [Legionella pneumophila 130b]
          Length = 458

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 155/290 (53%), Gaps = 24/290 (8%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           R  +D ++  L ++   LI +D+ + V ++ +E++  K   ++V        +  ++++D
Sbjct: 21  RLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLGQEVLTSLNPDQAFIKIVHD 80

Query: 88  VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLA 145
             ELIH M     +    D+ +  P V L+ G+ G GKTT   KL++ + +    KVM+A
Sbjct: 81  --ELIHVMG---DERVELDYKTQPPAVFLMAGLQGSGKTTSTAKLARYLKETENKKVMMA 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           + D +R AAI QLK+ A++    F  S+       +A +A + A+ + VDVLI+DTAGRL
Sbjct: 136 SVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESARKQYVDVLILDTAGRL 195

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H +  +M+ I  + + +       P   L V+D+ TGQ+A    + FH     TG+I+TK
Sbjct: 196 HVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAKAFHEALPLTGVILTK 249

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            DG ARGG  + +      P+ F+G GE I  LEPF  +  ++ I G  D
Sbjct: 250 TDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERIASRILGMGD 299


>gi|254785308|ref|YP_003072737.1| signal recognition particle protein [Teredinibacter turnerae T7901]
 gi|237684927|gb|ACR12191.1| signal recognition particle protein [Teredinibacter turnerae T7901]
          Length = 523

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 167/323 (51%), Gaps = 18/323 (5%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDI 58
           +Q  A+E+L   R+    F + S +L   +  I    RL+ D +++ L D+   L+ +D+
Sbjct: 40  SQHRATENLHRNRQFAM-FDNLSDRLTRSLKKITGKSRLNHDNIQDALRDVRKALLEADV 98

Query: 59  GVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
            + V +  +  +  +   ++VS      Q+ L  V   + +++   ++  N   +  P V
Sbjct: 99  ALPVVKDFINHVRKRAQGQEVSRALNPGQQFLKIVESELTELMGAANESLNL-ATQPPAV 157

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +L+ G+ G GKTT + KL++ + +    KVM+ + D +R AAI QL+  A    A+F  S
Sbjct: 158 VLMAGLQGAGKTTTVAKLARFLQEKHKKKVMVVSADVYRPAAIKQLETLAAEVEAEFFPS 217

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                  A+A  A +QA+   +DVL++DTAGRLH +  LMA I  + + +       P  
Sbjct: 218 SSDQQPVAIAKAAIEQAKKSHMDVLLVDTAGRLHIDEQLMAEIQGLHKAVN------PVE 271

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L V+D+  GQ+A+   + F+     TG+++TK DG ARGG  + +      P+ F+GVG
Sbjct: 272 TLFVIDSMIGQDAVNTAKAFNDALPLTGVVLTKTDGDARGGAALSVRHITGKPIKFMGVG 331

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E    LEPF  +  ++ I G  D
Sbjct: 332 EKTEALEPFHPERVASRILGMGD 354


>gi|315230267|ref|YP_004070703.1| FtsY-like signal recognition particle receptor protein subunit
           alpha [Thermococcus barophilus MP]
 gi|315183295|gb|ADT83480.1| FtsY-like signal recognition particle receptor protein, alpha
           subunit [Thermococcus barophilus MP]
          Length = 300

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 116/196 (59%), Gaps = 10/196 (5%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
             +P VI+ VG NG GKTT I KL+  +   GL  ++AA DTFR+ AI+Q++  A R   
Sbjct: 101 KEKPFVIVFVGFNGSGKTTTIAKLAHWLKKHGLSSVIAASDTFRAGAIEQVEEHARRVGV 160

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +    G+D AA+AY+A + A+A+ VDV+++DTAGR   N  LM  + K++RV K    
Sbjct: 161 KVIKHRYGADPAAVAYDAIQHAKARGVDVVLVDTAGRNELNRNLMDEMKKIVRVTK---- 216

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI--P 285
             P  V+ V DA  G   + Q   F+      G+I+TK+D  ARGG  + I  +H I  P
Sbjct: 217 --PDLVIFVGDALAGNAIIEQARQFNEAVKIDGVILTKLDADARGGAALSI--SHAIGAP 272

Query: 286 VYFLGVGEGINDLEPF 301
           + F+G+G+G +DL+ F
Sbjct: 273 ILFVGIGQGYDDLKEF 288


>gi|332967949|gb|EGK07037.1| signal recognition particle protein [Kingella kingae ATCC 23330]
          Length = 455

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 156/287 (54%), Gaps = 23/287 (8%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD-VSELIH 93
           +D ++E L ++   L+ +D+ + + +  V    E  L K +A +++ ++  +  V+E + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPIVKDFVKQVKERALGKEFADNLTPEQAFFGIVNEALI 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK--VMLAAGDTFR 151
           +++   +   N   ++ P  +L+ G+ G GKTT +GKL+K + D   K  +++ + D +R
Sbjct: 84  ELMGKENSALNL-AANPPATVLMAGLQGAGKTTTVGKLAKLLKDQNKKKKILVVSADVYR 142

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            AAI+QLK+ A +   DF  S++  +   +A  A   A+ +  DVL++DTAGRL  ++ +
Sbjct: 143 PAAIEQLKLLAQQVQVDFFPSDVSQNPVEIAKAAQDFAKKQFYDVLMVDTAGRLAIDAEM 202

Query: 212 MAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           M  I  +         HA   P   L V+DA  GQ+A+   + F      TG+I+TKMDG
Sbjct: 203 MNEIQAI---------HATINPVETLFVVDAMLGQDAVNTAKAFDEALPLTGVILTKMDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +RGG  + +  T   P+ F+G+GE IN LEPF     ++ I G  D
Sbjct: 254 DSRGGAALSVRQTTGKPIKFIGIGEKINGLEPFHPDRIASRILGMGD 300


>gi|261402637|ref|YP_003246861.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369630|gb|ACX72379.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 450

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 155/287 (54%), Gaps = 22/287 (7%)

Query: 39  RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           R+L   V ++++  LI++D+ V         + ++ +EE   K  +K   + +++Y+  E
Sbjct: 24  RKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYE--E 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L+ K+L   +K    +   + +VIL++G+ G GKTT   KL++ +   GLK  L A DT+
Sbjct: 82  LV-KLLGEEAKKLELN-PKKQNVILLIGIQGSGKTTTAAKLARYVQKRGLKPALIAADTY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           R AA +QLK  A++        E  + D   +  E  ++   KK DVLIIDTAGR     
Sbjct: 140 RPAAYEQLKQLAEKIHVPLYGDETRTKDPVEIVKEGMQKF--KKADVLIIDTAGRHKEEK 197

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTKMDG 268
            L+  + ++  +        P  ++ V+D T GQ A  Q + F    G  G +I+TK+DG
Sbjct: 198 GLLEEMKQIKEITN------PDEIILVIDGTIGQQARIQAKAFKDAVGEIGSIIVTKLDG 251

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +A+GGG +  V   + P+ F+GVGEGI+DLEPF  K F + + G  D
Sbjct: 252 SAKGGGALSAVAETQAPIKFIGVGEGIDDLEPFDPKKFISRLLGMGD 298


>gi|302392419|ref|YP_003828239.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Acetohalobium arabaticum DSM 5501]
 gi|302204496|gb|ADL13174.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Acetohalobium arabaticum DSM 5501]
          Length = 453

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 137/268 (51%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  + ++  +   K+V       Q+V+  V+E +  ++       +   
Sbjct: 39  LLEADVNFKVVKNFISDIEERAVGKEVMDSLTPAQQVIKIVNEELTDLMGGTQSKLSI-A 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P VI++VG+ G GKTT +GKL+K +   G + +L AGD +R AAI QL++  +R   
Sbjct: 98  SDPPTVIMLVGLQGAGKTTTVGKLAKHLHKNGRRPLLVAGDVYRPAAIKQLQVLGERLDQ 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    D   +A      A++   DV+IIDTAGRLH +  LM  +  +   +     
Sbjct: 158 PVFSMGDKQDPVDIAKAGVSHAESNGRDVVIIDTAGRLHIDEELMGELKDIKAAVN---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+DA TGQ+A+   E F    G  G+ +TK+DG ARGG  + I      P+ 
Sbjct: 214 --PQEILLVVDAMTGQDAVNVAESFDDALGVDGITLTKLDGDARGGAALSIRKVTGRPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G GE ++DLEPF     ++ I G  D
Sbjct: 272 FVGTGEKLDDLEPFHPDRMASRILGMGD 299


>gi|54293394|ref|YP_125809.1| hypothetical protein lpl0443 [Legionella pneumophila str. Lens]
 gi|53753226|emb|CAH14673.1| hypothetical protein lpl0443 [Legionella pneumophila str. Lens]
          Length = 458

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 155/290 (53%), Gaps = 24/290 (8%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           R  +D ++  L ++   LI +D+ + V ++ +E++  K   ++V        +  ++++D
Sbjct: 21  RLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLGQEVLTSLNPDQAFIKIVHD 80

Query: 88  VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLA 145
             ELIH M     +    D+ +  P V L+ G+ G GKTT   KL++ + +    KVM+A
Sbjct: 81  --ELIHVMG---DERVELDYKTQPPAVFLMAGLQGSGKTTSTAKLARYLKETENKKVMMA 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           + D +R AAI QLK+ A++    F  S+       +A +A + A+ + VDVLI+DTAGRL
Sbjct: 136 SVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESARKQYVDVLILDTAGRL 195

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H +  +M+ I  + + +       P   L V+D+ TGQ+A    + FH     TG+I+TK
Sbjct: 196 HVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAKAFHEALPLTGVILTK 249

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            DG ARGG  + +      P+ F+G GE I  LEPF  +  ++ I G  D
Sbjct: 250 TDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERIASRILGMGD 299


>gi|261491854|ref|ZP_05988433.1| signal recognition particle protein [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494675|ref|ZP_05991155.1| signal recognition particle protein [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309640|gb|EEY10863.1| signal recognition particle protein [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261312509|gb|EEY13633.1| signal recognition particle protein [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 470

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 157/306 (51%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V +  + ++  K  A
Sbjct: 9   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKV--KERA 66

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFS---HRPHVILVVGVNGVGKTTVIGK 130
             V V + L    E +  +   L       N + +     P VIL+ G+ G GKTT +GK
Sbjct: 67  LGVEVNKSLTPGQEFLKIVQSELETAMGEANEELNLAAQPPAVILMAGLQGAGKTTSVGK 126

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K + +    KV++ + D +R AAI QL+  A+    DF  +E      A+A  A K A
Sbjct: 127 LAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAETLKVDFFPTETSQKPVAIAEAALKHA 186

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    
Sbjct: 187 KLNFFDVLIVDTAGRLHVDGEMMEEIQQIHAVLN------PIETLFTVDAMTGQDAANTA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ 
Sbjct: 241 KAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASR 300

Query: 310 ITGCLD 315
           I G  D
Sbjct: 301 ILGMGD 306


>gi|4538|emb|CAA34781.1| Srh1p [Saccharomyces cerevisiae]
          Length = 541

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 143/282 (50%), Gaps = 33/282 (11%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS------------VQRVLYD-VSELI------H 93
           L+ SD+ +A+  K+   + ++  +++ S            +Q+ ++D + +L+       
Sbjct: 40  LLESDVNIALVSKLRNNIRSQLLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEE 99

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K  +P  +  N        +I+ VG+ G GKTT   KL+   S  G KV L   DTFR+ 
Sbjct: 100 KAFVPKKRKTN--------IIMFVGLQGSGKTTSCTKLAVYYSKEGFKVGLVCADTFRAG 151

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQLK  A R    F  S   +D A +A E   + + +K D++I+DT+GR H    L  
Sbjct: 152 AFDQLKQNAIRARIPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQ 211

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++  V+K      P+  + VLDA+ GQ A +Q + F   +    +I+TKMDG ARGG
Sbjct: 212 EMIEISNVIK------PNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGG 265

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G I  V     P+ F+G GE I+DLE F  K F + + G  D
Sbjct: 266 GAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKLLGIGD 307


>gi|33861842|ref|NP_893403.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33640210|emb|CAE19745.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 498

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 152/286 (53%), Gaps = 14/286 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           IS   +DD +++ ++  L+ +D+ ++V ++ V ++  K   ++V       Q+ +  V++
Sbjct: 22  ISENNIDDALKQ-VKKALLDADVSLSVVKEFVSDVKDKAIGEEVVRGVNPGQKFIEVVNK 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  ++   + P N   +  P VIL+ G+ G GKTT  GKL   + +   KV+L A D +
Sbjct: 81  ELINIMGNENSPLNKKETT-PTVILMAGLQGAGKTTATGKLGLYLKEKEEKVLLVAADIY 139

Query: 151 RSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           R AA++QLK   ++   + F   E  S    +A +A   A A  +D LI+DTAGRL  + 
Sbjct: 140 RPAAVEQLKTIGNQYDLEVFSAKEKNSKPEEIARDALSYANANNIDTLIVDTAGRLQIDE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +M   G+M+R+ +      P  VL V+D+  GQ A    + FH   G TG I+TK+DG 
Sbjct: 200 SMM---GEMVRIKQ---VTKPDEVLLVVDSMIGQEAADLTKSFHEKVGITGAILTKLDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + I      P+ F+G GE I  L+PF  +  ++ I G  D
Sbjct: 254 SRGGAALSIRKISGKPIKFIGTGEKIEALQPFHPERMASRILGMGD 299


>gi|300709656|ref|YP_003735470.1| signal recognition particle-docking protein FtsY [Halalkalicoccus
           jeotgali B3]
 gi|299123339|gb|ADJ13678.1| signal recognition particle-docking protein FtsY [Halalkalicoccus
           jeotgali B3]
          Length = 397

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/266 (36%), Positives = 142/266 (53%), Gaps = 13/266 (4%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           +G  ++LE  L+ SD+   VAQ+IV  L  +   A     Q V   V + + + L+ +  
Sbjct: 126 EGPLDDLEFALLESDVEFTVAQEIVANLRDELENATRGMTQTVEERVDQALREALLEVIS 185

Query: 102 PFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              +DF  R      P  ++  GVNGVGKTT I KLS+ + + G   +LA GDT+R+ A 
Sbjct: 186 VGQFDFDERIAAAEKPVTLIFTGVNGVGKTTSIAKLSQYLEERGYSTVLANGDTYRAGAN 245

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +Q++  A       +  E G D AA+ Y+A + AQA  +DV++ DTAGRLH N  LM  +
Sbjct: 246 EQIREHARNLDTKLISHEQGGDPAAVIYDAVEYAQAHGIDVVLGDTAGRLHTNEGLMDQL 305

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K+ RV+       P   L   +A  GQ+A+++ + F+  A   G I+TK D  A GG  
Sbjct: 306 EKIDRVV------GPDMTLFTDEAVAGQDAVQRAKKFNDAAEIDGAILTKADADANGGAA 359

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPF 301
           I I      P+ FLG G+G +D+E F
Sbjct: 360 ISIAYVTGKPILFLGTGQGYDDIERF 385


>gi|332288625|ref|YP_004419477.1| signal recognition particle protein [Gallibacterium anatis UMN179]
 gi|330431521|gb|AEC16580.1| signal recognition particle protein [Gallibacterium anatis UMN179]
          Length = 458

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 156/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +D ++E L ++   L+ +D+ + V ++ + ++  K  A
Sbjct: 2   FENLSDRLSRTLRNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFINQV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDF---SHRPHVILVVGVNGVGKTTVIGK 130
             V V + L    E I  +   L K     N      +  P VIL+ G+ G GKTT + K
Sbjct: 60  LGVEVNKSLTPGQEFIKIVQAELEKAMGEANETLNLATQPPAVILMAGLQGAGKTTSVAK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K +      KVM+ + D +R AAI QL+  A   +A F  S+       +   A  +A
Sbjct: 120 LAKFLQQRHKKKVMVVSADVYRPAAIKQLETLAQSVNATFYPSDASQKPEEIVKAALSEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVLI+DTAGRLH +  +M  I ++ +VL       P   L  +DA TGQ+A    
Sbjct: 180 KLKFFDVLIVDTAGRLHVDEEMMNEIKQIHQVLN------PIETLFTVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG ARGG  + I      P+ FLG+GE  + LEPF  +  ++ 
Sbjct: 234 KAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGMGEKTDALEPFYPERIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|187931703|ref|YP_001891687.1| signal recognition particle GTPase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712612|gb|ACD30909.1| signal recognition particle GTPase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 458

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L ++ ++  L D+   L+ +D+ + V +K +  +  K   
Sbjct: 2   FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I K L   + P N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +   A K A+
Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPEDIVTAAIKTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH ++ +M  I ++ ++ K      P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + L+PF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALKPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|323306831|gb|EGA60116.1| Srp54p [Saccharomyces cerevisiae FostersO]
          Length = 547

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 143/282 (50%), Gaps = 33/282 (11%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS------------VQRVLYD-VSELI------H 93
           L+ SD+ +A+  K+   + ++  +++ S            +Q+ ++D + +L+       
Sbjct: 40  LLESDVNIALVSKLRNNIRSQLLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEE 99

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K  +P  +  N        +I+ VG+ G GKTT   KL+   S  G KV L   DTFR+ 
Sbjct: 100 KAFVPKKRKTN--------IIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFRAG 151

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQLK  A R    F  S   +D A +A E   + + +K D++I+DT+GR H    L  
Sbjct: 152 AFDQLKQNAIRARIPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQ 211

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++  V+K      P+  + VLDA+ GQ A +Q + F   +    +I+TKMDG ARGG
Sbjct: 212 EMIEISNVIK------PNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGG 265

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G I  V     P+ F+G GE I+DLE F  K F + + G  D
Sbjct: 266 GAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKLLGIGD 307


>gi|207340327|gb|EDZ68711.1| YPR088Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 541

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 143/282 (50%), Gaps = 33/282 (11%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS------------VQRVLYD-VSELI------H 93
           L+ SD+ +A+  K+   + ++  +++ S            +Q+ ++D + +L+       
Sbjct: 40  LLESDVNIALVSKLRNNIRSQLLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEE 99

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K  +P  +  N        +I+ VG+ G GKTT   KL+   S  G KV L   DTFR+ 
Sbjct: 100 KAFVPKKRKTN--------IIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFRAG 151

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQLK  A R    F  S   +D A +A E   + + +K D++I+DT+GR H    L  
Sbjct: 152 AFDQLKQNAIRARIPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQ 211

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++  V+K      P+  + VLDA+ GQ A +Q + F   +    +I+TKMDG ARGG
Sbjct: 212 EMIEISNVIK------PNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGG 265

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G I  V     P+ F+G GE I+DLE F  K F + + G  D
Sbjct: 266 GAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKLLGIGD 307


>gi|6325345|ref|NP_015413.1| Srp54p [Saccharomyces cerevisiae S288c]
 gi|1711516|sp|P20424|SRP54_YEAST RecName: Full=Signal recognition particle subunit SRP54; AltName:
           Full=Signal recognition particle 54 kDa protein homolog
 gi|4542|emb|CAA35952.1| signal recognition particle [Saccharomyces cerevisiae]
 gi|172705|gb|AAA35092.1| signal recognition particle 54 kDa subunit [Saccharomyces
           cerevisiae]
 gi|1230693|gb|AAB68136.1| Srp54p: Signal recognition particle 54 kd subunit (Swiss Prot.
           accession number P20424) [Saccharomyces cerevisiae]
 gi|151942868|gb|EDN61214.1| Signal recognition particle (SRP) subunit [Saccharomyces cerevisiae
           YJM789]
 gi|256272197|gb|EEU07192.1| Srp54p [Saccharomyces cerevisiae JAY291]
 gi|259150240|emb|CAY87043.1| Srp54p [Saccharomyces cerevisiae EC1118]
 gi|285815613|tpg|DAA11505.1| TPA: Srp54p [Saccharomyces cerevisiae S288c]
 gi|323331335|gb|EGA72753.1| Srp54p [Saccharomyces cerevisiae AWRI796]
 gi|323335166|gb|EGA76456.1| Srp54p [Saccharomyces cerevisiae Vin13]
 gi|323346316|gb|EGA80606.1| Srp54p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323350224|gb|EGA84371.1| Srp54p [Saccharomyces cerevisiae VL3]
 gi|226740|prf||1604366B signal recognition particle 54kD protein
          Length = 541

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 143/282 (50%), Gaps = 33/282 (11%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS------------VQRVLYD-VSELI------H 93
           L+ SD+ +A+  K+   + ++  +++ S            +Q+ ++D + +L+       
Sbjct: 40  LLESDVNIALVSKLRNNIRSQLLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEE 99

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K  +P  +  N        +I+ VG+ G GKTT   KL+   S  G KV L   DTFR+ 
Sbjct: 100 KAFVPKKRKTN--------IIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFRAG 151

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQLK  A R    F  S   +D A +A E   + + +K D++I+DT+GR H    L  
Sbjct: 152 AFDQLKQNAIRARIPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQ 211

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++  V+K      P+  + VLDA+ GQ A +Q + F   +    +I+TKMDG ARGG
Sbjct: 212 EMIEISNVIK------PNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGG 265

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G I  V     P+ F+G GE I+DLE F  K F + + G  D
Sbjct: 266 GAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKLLGIGD 307


>gi|90416161|ref|ZP_01224093.1| signal recognition particle GTPase [marine gamma proteobacterium
           HTCC2207]
 gi|90331886|gb|EAS47100.1| signal recognition particle GTPase [marine gamma proteobacterium
           HTCC2207]
          Length = 474

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 153/289 (52%), Gaps = 20/289 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSE 90
           +S   + D +RE +   L+ +D+ + V +  +E++  +   ++V+      Q+ L  V  
Sbjct: 24  LSEANIQDSLRE-VRMALLEADVALPVVKDFIEQVKQRALGQEVNRSLNPGQQFLKIVQA 82

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDT 149
            + K++   ++  N   +  P +IL+ G+ G GKTT   KLS+ + +    KVM+ + D 
Sbjct: 83  ELEKVMGEQNESLNL-AAQPPAIILMAGLQGAGKTTSAAKLSRYLGEREKKKVMVVSADV 141

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A    A+F  S+I     A+   A   A+ K VDVLI+DTAGRL  + 
Sbjct: 142 YRPAAIEQLKTLAGEVGAEFFPSDISQKPVAIVNAAIDSAKKKFVDVLIVDTAGRLAVDD 201

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +MA I ++         HA   P   L V+DA  GQ+A+   + F+     TG+I+TK+
Sbjct: 202 EMMAEIKQI---------HAAANPIETLFVIDAMIGQDAVNTAKAFNDALPLTGVILTKV 252

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG ARGG  + +      P+ FLGVGE  + LEPF  +  ++ I G  D
Sbjct: 253 DGDARGGAALSVRQITGKPIKFLGVGEKTDALEPFHPERIASRILGMGD 301


>gi|89256557|ref|YP_513919.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. holarctica LVS]
 gi|115314989|ref|YP_763712.1| type II general secretory pathway signal recognition particle
           protein Ffh [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502677|ref|YP_001428742.1| signal recognition particle protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010983|ref|ZP_02275914.1| signal recognition particle protein [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254369456|ref|ZP_04985468.1| signal recognition particle protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953088|ref|ZP_06557709.1| signal recognition particle protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313694|ref|ZP_06804276.1| signal recognition particle protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144388|emb|CAJ79678.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. holarctica LVS]
 gi|115129888|gb|ABI83075.1| Sec family Type II general secretory pathway signal recognition
           particle protein Ffh [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253280|gb|ABU61786.1| signal recognition particle protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122406|gb|EDO66546.1| signal recognition particle protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 458

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L ++ ++  L D+   L+ +D+ + V +K +  +  K   
Sbjct: 2   FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I K L   + P N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+   +  + +F  S+       +   A K A+
Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLVNSLNVEFFESDASQQPEDIVTAAIKTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH ++ +M  I ++ ++ K      P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|296105951|ref|YP_003617651.1| signal recognition particle, subunit SRP54 [Legionella pneumophila
           2300/99 Alcoy]
 gi|295647852|gb|ADG23699.1| signal recognition particle, subunit SRP54 [Legionella pneumophila
           2300/99 Alcoy]
          Length = 458

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 155/290 (53%), Gaps = 24/290 (8%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           R  +D ++  L ++   LI +D+ + V ++ +E++  K   ++V        +  ++++D
Sbjct: 21  RLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLGQEVLTSLNPDQAFIKIVHD 80

Query: 88  VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLA 145
             ELIH M     +    D+ +  P V L+ G+ G GKTT   KL++ + +    K+M+A
Sbjct: 81  --ELIHVMG---DERVELDYKTQPPAVFLMAGLQGSGKTTSTAKLARYLKETENKKIMMA 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           + D +R AAI QLK+ A++    F  S+       +A +A + A+ + VDVLI+DTAGRL
Sbjct: 136 SVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESARKQYVDVLILDTAGRL 195

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H +  +M+ I  + + +       P   L V+D+ TGQ+A    + FH     TG+I+TK
Sbjct: 196 HVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAKAFHEALPLTGVILTK 249

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            DG ARGG  + +      P+ F+G GE I  LEPF  +  ++ I G  D
Sbjct: 250 TDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERIASRILGMGD 299


>gi|290967715|ref|ZP_06559270.1| signal recognition particle protein [Megasphaera genomosp. type_1
           str. 28L]
 gi|290782231|gb|EFD94804.1| signal recognition particle protein [Megasphaera genomosp. type_1
           str. 28L]
          Length = 451

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 159/315 (50%), Gaps = 33/315 (10%)

Query: 20  GFASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
            F S S + +E    +    +L ++ VRE L+++   L+ +D+   VA+  ++ +  K  
Sbjct: 2   AFESLSERFQEAFKKLRGKGKLNEEDVREALKEIRRALLEADVNFTVAKDFIKRVQEKAV 61

Query: 76  AKDV--------SVQRVLYD-VSELI---HKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++V        +V +++ D ++EL+      L   SKP        P V+++ G+ G G
Sbjct: 62  GEEVFGSLNASQTVIKIVRDELTELLGGTQSRLTVSSKP--------PTVLMLAGLQGAG 113

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT   KL+K +   G   +L A D +R AAI QL+I  +  +      E   D   +  
Sbjct: 114 KTTTAAKLAKHLKQKGKNPLLVAADVYRPAAITQLEILGNELNIPVYKEENCQDPVGIVS 173

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A   A A   D +IIDTAGRLH N +LM    ++I + + +    PH +L V+DA TGQ
Sbjct: 174 RAVPYATAHLCDTVIIDTAGRLHINEVLM---DELIHIKETVH---PHEILLVVDAMTGQ 227

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A+     F A  G  GLIMTK+DG ARGG  + I      P+ F+GV E  + LE F  
Sbjct: 228 DAVTAASAFDAALGIDGLIMTKLDGDARGGAALSIKAVTGKPIKFIGVSEKTDGLEEFHP 287

Query: 304 KDFSAVITGCLDYGE 318
             +++ I   LD G+
Sbjct: 288 HRYASRI---LDLGD 299


>gi|16272080|ref|NP_438280.1| Signal recognition particle protein [Haemophilus influenzae Rd
           KW20]
 gi|260580590|ref|ZP_05848417.1| signal recognition particle protein [Haemophilus influenzae RdAW]
 gi|1174434|sp|P44518|SRP54_HAEIN RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|1573059|gb|AAC21784.1| signal recognition particle protein (ffh) [Haemophilus influenzae
           Rd KW20]
 gi|260092652|gb|EEW76588.1| signal recognition particle protein [Haemophilus influenzae RdAW]
          Length = 462

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|282856889|ref|ZP_06266145.1| signal recognition particle protein [Pyramidobacter piscolens
           W5455]
 gi|282585246|gb|EFB90558.1| signal recognition particle protein [Pyramidobacter piscolens
           W5455]
          Length = 436

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 165/303 (54%), Gaps = 24/303 (7%)

Query: 28  LKEGITDIISSRR-----LDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV 79
           LKE +  I S  R      ++ V++ L ++   L+ +D+   V + +VE++  +    DV
Sbjct: 5   LKERLERIFSGLRGRGKLTEEDVQQALREVRRALLEADVNYKVVKDLVEKIRVRAVGADV 64

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSK 133
                  Q+V   V E I +++   S+    D S +P  ++++VG+ G GKTT   KL+K
Sbjct: 65  LGSIMPAQQVSAVVYEEIARIMGEGSR--GIDISPQPPTLVMMVGLQGGGKTTSSAKLAK 122

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAK 192
           K+S +  K ML A D  R AA+DQL++ A +    F   E G SD  AL+  A   A + 
Sbjct: 123 KLSKSH-KPMLVACDLRRPAAVDQLRVLAGQAGVAFFGPEAGESDVVALSQRALAYAASH 181

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +DVLI DTAGRL  +  +MA + +M   L      APH +L V+DA +GQ AL   E F
Sbjct: 182 LIDVLIFDTAGRLAVDEEMMAELDRMKAAL------APHEILLVVDAMSGQEALNVAEAF 235

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +   G TG++++K+DG ARGG  + ++    +PV F GVGEG++ +E F  +  +  I G
Sbjct: 236 NNRLGVTGVVLSKLDGDARGGAALAVLAATGVPVKFAGVGEGLDAIEQFDPRRMAERIMG 295

Query: 313 CLD 315
             D
Sbjct: 296 MGD 298


>gi|289522289|ref|ZP_06439143.1| signal recognition particle protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289504125|gb|EFD25289.1| signal recognition particle protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 445

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 158/304 (51%), Gaps = 25/304 (8%)

Query: 28  LKEGITDIISSRR---------LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           LKE +  I S  R         ++D +RE +   L+ +D+   +A+ +VE +  +   ++
Sbjct: 5   LKERLEGIFSKLRGKGRLTEEDINDALRE-VRRALLEADVNYKIAKDLVERIKERCLGQE 63

Query: 79  V-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           V       Q+V   V E +  ++    +  N+     P V ++VG+ G GKTT   KL+ 
Sbjct: 64  VLSSITPAQQVYAVVYEELCNLMGGKKERLNF-APKPPSVFMLVGLQGSGKTTTAVKLAL 122

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGS-DAAALAYEAFKQAQA 191
           K+SD+  K M+ A D  R AA+ QLK+ AD+    F    E GS +   +  +A   A A
Sbjct: 123 KISDSH-KPMVVACDLRRPAAVKQLKVLADKARIPFFGPEEAGSGNVMDVTRKALSYADA 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +DV+I DTAGRLH +  LMA + +M ++L       P  VL V+D+ TGQ  +   E 
Sbjct: 182 HLIDVIIFDTAGRLHIDDDLMAELEQMHKLLD------PSEVLLVIDSMTGQEGVNVAEA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   AG TG+++TK+DG ARGG  + +     +P+  +GVGE + DLE F A   +  I 
Sbjct: 236 FKEKAGITGVVLTKLDGDARGGAALAVKAATGVPIKLVGVGEHLEDLEEFDATRMAQRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|150400248|ref|YP_001324015.1| signal recognition particle-docking protein FtsY [Methanococcus
           vannielii SB]
 gi|150012951|gb|ABR55403.1| signal recognition particle-docking protein FtsY [Methanococcus
           vannielii SB]
          Length = 400

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 141/256 (55%), Gaps = 16/256 (6%)

Query: 56  SDIGVAVAQKIVEELL---------TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +D+   V +KI+E L          +K   ++++ + +   + E++ +  + + K  +  
Sbjct: 128 ADVAYEVVEKIIESLKNQLVGIKISSKDNPEEITFKALKKSIKEILSQDKIDVFKIIDEK 187

Query: 107 FSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            + + P V+L VG+NG GKTT I KL   + + G   ++AAGDTFR+ AI+QL      T
Sbjct: 188 KAKKEPAVLLFVGINGTGKTTSISKLGYILKEKGYSAVMAAGDTFRAGAIEQLDEHGKNT 247

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +  + G+D+AA+ Y+A + A+A+ ++V++ DTAGR   N  LM  I K++RV K  
Sbjct: 248 GIRVIKHQKGADSAAVIYDAIEHAKARGINVVLADTAGRQTTNINLMDEIKKVVRVTK-- 305

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  V+ V D+  G +A+ Q   F+      G I+TK D  A+GG  + I  + K P
Sbjct: 306 ----PDLVIFVGDSLAGNDAISQAMEFNDAVNINGAILTKTDADAKGGAALSIAYSIKKP 361

Query: 286 VYFLGVGEGINDLEPF 301
           + F+GVG+  +DL+ F
Sbjct: 362 ILFMGVGQKYSDLQKF 377


>gi|188996577|ref|YP_001930828.1| signal recognition particle protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931644|gb|ACD66274.1| signal recognition particle protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 444

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 160/309 (51%), Gaps = 24/309 (7%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA--------QKIVE 68
           LT+ F+S   KL+ G+  I   + LD+ +++ +   L+ +D+ V V         QK++ 
Sbjct: 5   LTEKFSSVVEKLR-GVKKI-DEKTLDEALKD-IRTALLEADVNVNVVKEFISDIKQKVLG 61

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           + L K  +   +V +++YD  E I K+L     P      + P +I++VG+ G GKTT  
Sbjct: 62  QELIKGLSAGETVIKLIYD--ETI-KILGGEESPTLAKPDNPPAIIMLVGLQGTGKTTTA 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC--SEIGSDAAALAYEAF 186
           GKL+K +   G +V +A+ D  R AA  QL   A   S D  C   E   DA  L  +  
Sbjct: 119 GKLAKYLKSKGYRVGVASTDVRRPAAAKQLCTLAQ--SIDIPCFVDEEEKDALKLTEKVI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+ +    +I+DTAGRLH +  LM  + K+   +K      P  VL V DA  GQ+A+
Sbjct: 177 QDAKKQGFSYIILDTAGRLHIDQELMEELKKIKEKVK------PAEVLYVADAMQGQDAI 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              E FH   G TG+I+TK+DG A+GG  + +     +P+ F+G GE I +LEPF     
Sbjct: 231 TTAEEFHKAVGLTGVILTKLDGDAKGGIALSVRKVLGVPIKFIGTGEKIENLEPFYPDRI 290

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 291 AQRILGLGD 299


>gi|254362712|ref|ZP_04978796.1| signal recognition particle protein [Mannheimia haemolytica PHL213]
 gi|153094337|gb|EDN75192.1| signal recognition particle protein [Mannheimia haemolytica PHL213]
          Length = 463

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 157/306 (51%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V +  + ++  K  A
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFS---HRPHVILVVGVNGVGKTTVIGK 130
             V V + L    E +  +   L       N + +     P VIL+ G+ G GKTT +GK
Sbjct: 60  LGVEVNKSLTPGQEFLKIVQSELETAMGEANEELNLAAQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K + +    KV++ + D +R AAI QL+  A+    DF  +E      A+A  A K A
Sbjct: 120 LAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVAIAEAALKHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    
Sbjct: 180 KLNFFDVLIVDTAGRLHVDGEMMEEIQQIHAVLN------PIETLFTVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|145639610|ref|ZP_01795214.1| Signal recognition particle protein [Haemophilus influenzae PittII]
 gi|145271401|gb|EDK11314.1| Signal recognition particle protein [Haemophilus influenzae PittII]
 gi|309750474|gb|ADO80458.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Haemophilus
           influenzae R2866]
          Length = 462

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|331698517|ref|YP_004334756.1| signal recognition particle-docking protein FtsY [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953206|gb|AEA26903.1| signal recognition particle-docking protein FtsY [Pseudonocardia
           dioxanivorans CB1190]
          Length = 607

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/269 (40%), Positives = 159/269 (59%), Gaps = 17/269 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKP 102
           E++E  L+++D+G  +  ++VE L T+  ++ V      +R+L DV   + + L P    
Sbjct: 341 EDVEATLLQADLGPEMTAELVEILRTEIASRGVRTPDQARRLLRDV---LGQALEPGLDR 397

Query: 103 FNWDFSH--RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                 H  RP V+LVVGVNG GKTT  GKL++ +   G  V+L A DTFR+AA +QL  
Sbjct: 398 SVAALPHDGRPAVLLVVGVNGTGKTTTTGKLARVLVADGRHVVLGAADTFRAAAAEQLAT 457

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           W +R  A  V    G D A++A++A K+  A   D +++DTAGRLH  + LM  +GK+ R
Sbjct: 458 WGERAGAAVVRGPEGGDPASVAFDAVKRGTADGADAVLLDTAGRLHTKTGLMDELGKVKR 517

Query: 221 VLKR---LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           V+++   +D      VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG +  
Sbjct: 518 VVEKQAEVD-----EVLLVLDATTGQNGLTQARVFGDVVKVTGIVLTKLDGTAKGGIVFR 572

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +     +PV  +G+GEG +DL PF    F
Sbjct: 573 VQRELGVPVKLVGLGEGPDDLAPFEPAAF 601


>gi|260581975|ref|ZP_05849770.1| signal recognition particle protein [Haemophilus influenzae NT127]
 gi|260094865|gb|EEW78758.1| signal recognition particle protein [Haemophilus influenzae NT127]
          Length = 462

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|322695331|gb|EFY87141.1| signal recognition particle 54 kDa protein [Metarhizium acridum
           CQMa 102]
          Length = 522

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 151/304 (49%), Gaps = 28/304 (9%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80
           ++   +T++   + LD    D + +E+   L+ +D+ V +  ++ + + +    KD+   
Sbjct: 9   RINAAVTNLTRDQNLDEKAFDNMLKEICSALLEADVNVKLVMQLRKSIKSTVNFKDLPPA 68

Query: 81  ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                 +Q+ ++D  EL+ +++ P ++PF      +P+VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-QLVDPHAEPFKPK-KGKPNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +  L   DTFR+ A DQLK  A +    +  S   +D AA+A     Q + +K 
Sbjct: 125 YQTRGFRACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAAVARAGVDQFKKEKF 184

Query: 195 DVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           DV+I+DT+GR    S L   M  I   IR         P   + VLDA+ GQ A  Q + 
Sbjct: 185 DVIIVDTSGRHRQESALFQEMIDIQTAIR---------PDETIMVLDASIGQQAESQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK DG A GGG I  V     P+ F+G GE + DLE F  + F   + 
Sbjct: 236 FKEAADFGAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDLERFAPQQFVQKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|147920512|ref|YP_685694.1| putative signal recognition particle [uncultured methanogenic
           archaeon RC-I]
 gi|110621090|emb|CAJ36368.1| putative signal recognition particle [uncultured methanogenic
           archaeon RC-I]
          Length = 377

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 167/299 (55%), Gaps = 27/299 (9%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           K   G  + ++ L +G  +++ S +  +G   ELE  L+ SD+ + VA+ I+     KR 
Sbjct: 81  KPAGGILNKAIALTKG--EVVLSEKDLEGPLWELEMALLESDVALPVAESII-----KRV 133

Query: 76  AKDVSVQ-----RVLYDVSE-----LIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGV 122
            +D++ Q     R   D++E      I  +L   +  F+ DF   S+RP VI  +GVNG 
Sbjct: 134 KEDLTGQHKKFLRSTGDLAEDALRDSIASILNTNALDFD-DFVRKSNRPVVITFIGVNGA 192

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I KL +++ + G  V++AAGDTFR+ AI+QL+  ADR     +    G+D AA+ 
Sbjct: 193 GKTTTIAKLGERLKEQGYGVVIAAGDTFRAGAIEQLEKHADRLGIKMIKHAQGADPAAVI 252

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+  K D+++ DTAGRLH N  LM  + K+ RV+K      P  V+ V +A  G
Sbjct: 253 YDAVQFAKNNKKDIVLADTAGRLHTNINLMEQLRKINRVVK------PDLVIFVDEAIAG 306

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            +A+ + ++F+     +G I+TK D  A+GG  I I      P+ FLGVG+   DL+ F
Sbjct: 307 NDAVERAKLFNDAVPVSGTILTKADADAKGGAAISIAHITGKPILFLGVGQEYKDLKKF 365


>gi|15603048|ref|NP_246120.1| hypothetical protein PM1183 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721534|gb|AAK03267.1| Ffh [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 458

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 158/306 (51%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +  + ++  K  A
Sbjct: 2   FENLSDRLSKTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINKV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDF---SHRPHVILVVGVNGVGKTTVIGK 130
             V V + L    E +  +   L       N      +  P VIL+ G+ G GKTT +GK
Sbjct: 60  IGVEVNKSLTPGQEFVKIVQAELEAAMGEANESLHLSTQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K + +    KV++ + D +R AAI QL+  A    ADF  S++  +   +A  A  +A
Sbjct: 120 LAKFLKERHKKKVLVVSADVYRPAAIKQLETLAQAVGADFFPSDVSQNPVQIAQAALSEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVLI+DTAGRLH +  +M  I ++   L       P   L  +DA TGQ+A    
Sbjct: 180 KLKFYDVLIVDTAGRLHVDGEMMDEIKQIHAALN------PIETLFTVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF  +  ++ 
Sbjct: 234 KSFNEALPLTGVVLTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPERVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|145629006|ref|ZP_01784805.1| signal recognition particle protein [Haemophilus influenzae
           22.1-21]
 gi|144978509|gb|EDJ88232.1| signal recognition particle protein [Haemophilus influenzae
           22.1-21]
          Length = 346

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|303249995|ref|ZP_07336197.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307253425|ref|ZP_07535296.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651058|gb|EFL81212.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306859104|gb|EFM91146.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 463

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  L  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVNKSLTPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++ RVL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|158430970|pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
           Of M. Jannaschii
 gi|158430971|pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
           Of M. Jannaschii
          Length = 432

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 154/290 (53%), Gaps = 28/290 (9%)

Query: 39  RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           ++L   V ++++  LI++D+ V         + ++ +EE   K  +K   + +++Y+  E
Sbjct: 23  KKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYE--E 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L+ K+L   +K    +   + +VIL+VG+ G GKTT   KL++ +   GLK  L A DT+
Sbjct: 81  LV-KLLGEEAKKLELN-PKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGS----DAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
           R AA +QLK  A++        E  +    D      E FK+A     DVLIIDTAGR  
Sbjct: 139 RPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKKA-----DVLIIDTAGRHK 193

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTK 265
               L+  + ++  +        P  ++ V+D T GQ A  Q + F    G  G +I+TK
Sbjct: 194 EEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTK 247

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +DG+A+GGG +  V   K P+ F+G+GEGI+DLEPF  K F + + G  D
Sbjct: 248 LDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGD 297


>gi|20095049|ref|NP_614896.1| Signal recognition particle GTPase [Methanopyrus kandleri AV19]
 gi|19888325|gb|AAM02826.1| Signal recognition particle GTPase [Methanopyrus kandleri AV19]
          Length = 349

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/287 (36%), Positives = 157/287 (54%), Gaps = 27/287 (9%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           +ELE  LI +D+ V VA+ I EEL    + +R      + +V   V E   + L+ + +P
Sbjct: 75  DELELELISNDVAVEVAESIREELKKELVGRRVKGKSEIPKV---VEEGFREALLSVLEP 131

Query: 103 FNW-DFSH---------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
               D            RP +I+ VGVNG GKTT I K++K + D G  V++AA DTFR+
Sbjct: 132 KKEVDLMETVEKARQDGRPAIIMFVGVNGSGKTTTIAKVAKLLKDHGYSVVIAAADTFRA 191

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL+  A+R     +  E G D  A+A+ A + A+AK  DV+++DTAGR + +  LM
Sbjct: 192 AAIEQLEEHAERLGVTLIKGERGDDPTAVAFNAVQHAEAKGKDVVLVDTAGRAYTDVNLM 251

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + KM RVL+      P  V+ V DA  G +A+ Q + FH   G    I+TK+D  A+G
Sbjct: 252 EELKKMKRVLE------PDLVVFVGDALAGNDAIEQAKTFHEYVGIDCAILTKVDADAKG 305

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319
           G ++ I      P+ +LGVG+  +DL+ F  + F   + G    GEE
Sbjct: 306 GAVLSISKVTGAPILYLGVGQDYDDLKAFSPEWFVERVIG----GEE 348


>gi|323714481|pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
           Recognition Particle
          Length = 454

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 154/290 (53%), Gaps = 28/290 (9%)

Query: 39  RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           ++L   V ++++  LI++D+ V         + ++ +EE   K  +K   + +++Y+  E
Sbjct: 23  KKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYE--E 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L+ K+L   +K    +   + +VIL+VG+ G GKTT   KL++ +   GLK  L A DT+
Sbjct: 81  LV-KLLGEEAKKLELN-PKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGS----DAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
           R AA +QLK  A++        E  +    D      E FK+A     DVLIIDTAGR  
Sbjct: 139 RPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKKA-----DVLIIDTAGRHK 193

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTK 265
               L+  + ++  +        P  ++ V+D T GQ A  Q + F    G  G +I+TK
Sbjct: 194 EEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTK 247

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +DG+A+GGG +  V   K P+ F+G+GEGI+DLEPF  K F + + G  D
Sbjct: 248 LDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGD 297


>gi|242084798|ref|XP_002442824.1| hypothetical protein SORBIDRAFT_08g003410 [Sorghum bicolor]
 gi|241943517|gb|EES16662.1| hypothetical protein SORBIDRAFT_08g003410 [Sorghum bicolor]
          Length = 559

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 157/309 (50%), Gaps = 23/309 (7%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT G  S   KL+ G+ DI++   + + +R+ +   L+ +D+ + V ++ +E +  K  
Sbjct: 81  QLTTGLESAWNKLR-GV-DILTKENIAEPMRD-IRRALLEADVSLPVVRRFIESVSEKAV 137

Query: 76  AKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
             DV         + +V+ D  EL+  M   +S   +  F+   P +IL+ G+ GVGKTT
Sbjct: 138 GTDVIRGVRPDQQLVKVVND--ELVQLMGGEVS---DLVFAKSGPTIILLAGLQGVGKTT 192

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           V  KL+  +   G   ML A D +R AAIDQL I   +           +  + +A    
Sbjct: 193 VCAKLAFYLKKMGKSCMLVAADVYRPAAIDQLTILGKKVGVPVYSEGTEAKPSQIAKNGL 252

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K+A+  K DV+I+DTAGRL  +  +M  + ++ + +       P  VL V+DA TGQ A 
Sbjct: 253 KEAKVNKADVIIVDTAGRLQVDKSMMNELKEVKKAVN------PTEVLLVVDAMTGQEAA 306

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             V  F+   G TG I+TK+DG +RGG  + +      P+ F+G GE I DLEPF     
Sbjct: 307 GLVSSFNDEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGQGERIEDLEPFYPDRM 366

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 367 AQRILGMGD 375


>gi|119871975|ref|YP_929982.1| signal recognition particle-docking protein FtsY [Pyrobaculum
           islandicum DSM 4184]
 gi|119673383|gb|ABL87639.1| signal recognition particle-docking protein FtsY [Pyrobaculum
           islandicum DSM 4184]
          Length = 307

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 111/197 (56%), Gaps = 6/197 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP V++ +G NG GKTT + KL+  + + G +V+ AA DTFR+ A +QL+    R     
Sbjct: 109 RPFVVMFLGPNGYGKTTTLAKLAFHLQEMGFRVVAAAADTFRAGAREQLEEHGRRVGFRV 168

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V    GSD AA+AY+A + A+++    ++IDTAGR+H ++ LM  + K+ RV +      
Sbjct: 169 VGGAYGSDPAAVAYDAIQHAKSRGYHFVLIDTAGRMHTDTNLMDELRKIQRVAE------ 222

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH  + V DA  G  AL   + +       G+I TK+D   +GG ++  +   K PVYFL
Sbjct: 223 PHRSIFVFDAQLGNEALEIAKYYSKYVNIDGMIATKVDAYPKGGSILTFIYVLKRPVYFL 282

Query: 290 GVGEGINDLEPFVAKDF 306
           GVG+   DL  F   ++
Sbjct: 283 GVGQTYRDLVKFSKAEY 299


>gi|170718344|ref|YP_001783571.1| signal recognition particle protein [Haemophilus somnus 2336]
 gi|168826473|gb|ACA31844.1| signal recognition particle protein [Haemophilus somnus 2336]
          Length = 458

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFIHQVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQTELEKAMGVANEKLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    K+M+ + D +R AAI QL+  A     DF  S +      +A  A  +A+
Sbjct: 121 AKFLKENYKKKIMVVSVDVYRPAAIKQLETLAQSIGVDFYPSNVSQKPVEIARTALAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDDTMMEEIQQIHTALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGIILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|226501792|ref|NP_001142003.1| hypothetical protein LOC100274153 [Zea mays]
 gi|194706754|gb|ACF87461.1| unknown [Zea mays]
          Length = 556

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 158/307 (51%), Gaps = 19/307 (6%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT G  S   KL+ G+ D+++   + + +R+ +   L+ +D+ + V ++ +E +  K  
Sbjct: 78  QLTTGLESAWNKLR-GV-DVLTKENIAEPMRD-IRRALLEADVSLPVVRRFIESVSEKAV 134

Query: 76  AKDV-----SVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVI 128
             DV       Q+++  VS EL+  M   +S   +  F+   P +IL+ G+ GVGKTTV 
Sbjct: 135 GTDVIRGVRPDQQLVKVVSDELVQLMGGEVS---DLVFAKSGPTIILLAGLQGVGKTTVC 191

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+  +   G   ML A D +R AAIDQL I   +           +  + +A    K+
Sbjct: 192 AKLAFYLKKLGKSCMLVAADVYRPAAIDQLTILGKKVGVPVYSEGTEAKPSQIAKNGLKE 251

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+  K DV+I+DTAGRL  +  +M  + ++ + +       P  VL V+DA TGQ A   
Sbjct: 252 AKVNKADVIIVDTAGRLQVDKAMMNELKEVKKAVN------PTEVLLVVDAMTGQEAAGL 305

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V  F+   G TG I+TK+DG +RGG  + +      P+ F+G GE I DLEPF     + 
Sbjct: 306 VSSFNDEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGQGERIEDLEPFYPDRMAQ 365

Query: 309 VITGCLD 315
            I G  D
Sbjct: 366 RILGMGD 372


>gi|15606801|ref|NP_214181.1| signal recognition particle receptor protein [Aquifex aeolicus VF5]
 gi|6226155|sp|O67615|SRP54_AQUAE RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|2984037|gb|AAC07579.1| signal recognition particle receptor protein [Aquifex aeolicus VF5]
          Length = 454

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/202 (39%), Positives = 113/202 (55%), Gaps = 6/202 (2%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +L VG+ G GKTT IGK++  +   G KV +++ D  R AA+ QL+  A+R    +   E
Sbjct: 98  VLFVGLQGTGKTTTIGKIANLLKKGGHKVAVSSTDLRRPAAMLQLQRLAERVGVPYYEFE 157

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G  A  +A  A K+A+ + VD L++DTAGRLH +  LM  + ++  V        P  +
Sbjct: 158 EGLGAVEIARRAVKRAKEESVDYLLLDTAGRLHVDEELMKELQEIKEVTN------PSEI 211

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V DA  GQ AL   + FH   G TG+++TKMDG ARGG  + +     +P+ F+GVGE
Sbjct: 212 LYVADAMQGQTALETAKTFHERLGLTGVVITKMDGDARGGLALSVKEVLGVPIKFIGVGE 271

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
            I D+EPF     +  I G  D
Sbjct: 272 KIEDIEPFYPDRIAQRILGLGD 293


>gi|224584530|ref|YP_002638328.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469057|gb|ACN46887.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 453

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 162/306 (52%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V+      Q  +  V SEL+  M    ++  N   +  P V+L+ G+ G GKTT +GK
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  N LEPF     ++ 
Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTNALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|219669778|ref|YP_002460213.1| signal recognition particle protein [Desulfitobacterium hafniense
           DCB-2]
 gi|219540038|gb|ACL21777.1| signal recognition particle protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 453

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 159/304 (52%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+E    + S  +L +  V E + ++   L+ +D+   V +  V ++  +   
Sbjct: 2   FQGLSEKLQETFKRLKSKGKLTEADVNEAMREVRMALLEADVNFKVVKDFVAKVKERSIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V+E +  ++  +S   N   S  P VI++VG+ G GKTT   KL
Sbjct: 62  QEVLESLSPGQQVIKIVNEEMVALMGGVSSKINIS-SKPPTVIMLVGLQGAGKTTHGAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL++  ++     V S    +   +A  + + A +
Sbjct: 121 ANMLKKQGKHPLLVACDIYRPAAIKQLEVLGEQIKVP-VFSLGQENPVKIAAASLQHANS 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DV+IIDTAGRLH N  LM  + ++   +K      PH +L V+DA TGQ+A+   E 
Sbjct: 180 QGLDVVIIDTAGRLHINEELMGELREIKTAVK------PHEILLVVDAMTGQDAVNVAES 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G  G+I+TK+DG  RGG  + +      P+ F GVGE ++ +EPF  +  ++ I 
Sbjct: 234 FHNELGVDGIILTKLDGDTRGGAALSVKAVTGCPIKFAGVGEKMDAIEPFFPERMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|255658401|ref|ZP_05403810.1| signal recognition particle protein [Mitsuokella multacida DSM
           20544]
 gi|260849734|gb|EEX69741.1| signal recognition particle protein [Mitsuokella multacida DSM
           20544]
          Length = 457

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 146/282 (51%), Gaps = 15/282 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           +D V E + ++   L+ +D+   V ++ ++ +  +   +D+       Q V+  V E + 
Sbjct: 25  EDDVNEAMREVRMALLEADVNFKVVKQFIKTVKERAIGQDILETLTPAQVVIKIVDEELT 84

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K++       N      P +I++VG+ G GKTT  GKL   +   G + +L A D +R A
Sbjct: 85  KLMGDTQSRINMS-PKPPTIIMMVGLQGAGKTTSAGKLGLALKKQGKRPLLVAADIYRPA 143

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           AI QL++   +        E G+DA  +A  +   +Q+   DV+IIDTAGRL  +  LM 
Sbjct: 144 AITQLQVLGKQLDIPVFSMEQGTDAVTIAKNSIDYSQSHACDVVIIDTAGRLQIDEKLMK 203

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            +  +     + + H PH +L V+DA TGQ ++   + F+   G  G++MTK+DG ARGG
Sbjct: 204 ELCDI-----KSEVH-PHEILLVVDAMTGQESVNVAQSFNDALGLDGVVMTKLDGDARGG 257

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + +     +P+ F+G+GE +  LEPF     ++ I G  D
Sbjct: 258 AALSVKAVTGVPIKFIGLGEKLEPLEPFHPDRMASRILGMGD 299


>gi|57641421|ref|YP_183899.1| signal recognition particle protein Srp54 [Thermococcus
           kodakarensis KOD1]
 gi|73919452|sp|Q5JJC8|SRP54_PYRKO RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|57159745|dbj|BAD85675.1| signal recognition particle, SRP54 subunit [Thermococcus
           kodakarensis KOD1]
          Length = 448

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 155/320 (48%), Gaps = 27/320 (8%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M+ +K+     S ++KL +        +KE + DI              +  L+++D+ V
Sbjct: 1   MALEKLGQALNSALKKLARSSTVDEATIKEIVRDI--------------QRALLQADVNV 46

Query: 61  AVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
            +  ++ +++  +   ++        + ++  V E + K L   +KP   +  H+P VIL
Sbjct: 47  KLVLQLTKQIQKRALEEEPPAGVSKKEHIIKIVYEELTKFLGTEAKPL--EIKHKPTVIL 104

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VG+ G GKTT + KL++ +   G KV +   DT+R  A  QL+   D    +       
Sbjct: 105 TVGIQGSGKTTSVAKLARYLQKRGYKVGVVCSDTWRPGAYYQLRQLLDPFGIEVFGDPEE 164

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            DA  LA E  +  + K VDV+I+D+AGR      L+  + ++   +K      PH V+ 
Sbjct: 165 KDAVKLAREGVEHFREKGVDVIIVDSAGRHKEEKGLIEEMRQISEAIK------PHEVIL 218

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+D T GQ A  Q   F        +I+TK+DG+A+GGG +  V     P+ F+G GE I
Sbjct: 219 VIDGTIGQQAYNQAMAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGERI 278

Query: 296 NDLEPFVAKDFSAVITGCLD 315
           +DLEPF  K F + + G  D
Sbjct: 279 DDLEPFDPKRFVSRLLGLGD 298


>gi|15668272|ref|NP_247065.1| signal recognition particle protein Srp54 [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2500886|sp|Q57565|SRP54_METJA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|1590878|gb|AAB98081.1| signal recognition particle, subunit SRP54 [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 451

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 154/290 (53%), Gaps = 28/290 (9%)

Query: 39  RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           ++L   V ++++  LI++D+ V         + ++ +EE   K  +K   + +++Y+  E
Sbjct: 24  KKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYE--E 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L+ K+L   +K    +   + +VIL+VG+ G GKTT   KL++ +   GLK  L A DT+
Sbjct: 82  LV-KLLGEEAKKLELN-PKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGS----DAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
           R AA +QLK  A++        E  +    D      E FK+A     DVLIIDTAGR  
Sbjct: 140 RPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKKA-----DVLIIDTAGRHK 194

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTK 265
               L+  + ++  +        P  ++ V+D T GQ A  Q + F    G  G +I+TK
Sbjct: 195 EEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTK 248

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +DG+A+GGG +  V   K P+ F+G+GEGI+DLEPF  K F + + G  D
Sbjct: 249 LDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGD 298


>gi|310658884|ref|YP_003936605.1| signal recognition particle protein [Clostridium sticklandii DSM
           519]
 gi|308825662|emb|CBH21700.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Clostridium sticklandii]
          Length = 448

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 128/234 (54%), Gaps = 7/234 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           Q+V+  V+E + +++  +    N   S  P VI++VG+ G GKT+  GKL+  +   G +
Sbjct: 73  QQVIKIVNEELSELMGGVQSKINIS-SKPPTVIMLVGLQGAGKTSTAGKLALNLKKQGKQ 131

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            ML A D +R AAI QL+I A    A F   E  ++   +A + +++A+    D++IIDT
Sbjct: 132 PMLVACDVYRPAAIKQLEIVASGAGAIFYSEEGNTNPVEIATKGYEKAKTLGYDIVIIDT 191

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH +  LM  +  +   +K      PH ++ V+D+ TGQ+A+   E F    G  G+
Sbjct: 192 AGRLHIDENLMDELKNIKSSIK------PHEIMLVVDSMTGQDAVNIAESFDQTLGIDGV 245

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I+TK+DG  RGG  + I    K P+ +  VGE + DLE F     ++ I G  D
Sbjct: 246 ILTKLDGDTRGGAALSIKAITKKPIKYAAVGEKLEDLEQFYPDRMASRILGMGD 299


>gi|294815360|ref|ZP_06774003.1| Signal recognition particle [Streptomyces clavuligerus ATCC 27064]
 gi|326443713|ref|ZP_08218447.1| signal recognition particle-docking protein FtsY [Streptomyces
           clavuligerus ATCC 27064]
 gi|294327959|gb|EFG09602.1| Signal recognition particle [Streptomyces clavuligerus ATCC 27064]
          Length = 409

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 175/304 (57%), Gaps = 13/304 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----- 70
           +L    A +   L +G+  ++S   LD+   EE+E+ L+ +D+GVA  Q++VE L     
Sbjct: 111 RLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLTADVGVAPTQELVERLRERVK 170

Query: 71  -LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            L  R   ++        ++ +   +   +      D    P V++VVGVNG GKTT  G
Sbjct: 171 VLGTRTPDELRTLLREELLTLVGTDLDRAVKTESGLDT---PGVVMVVGVNGTGKTTTTG 227

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++A++A K+ 
Sbjct: 228 KLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEG 287

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQ 248
            A+  DV++IDTAGRLH  + LM  +GK+ RV+++   H P   +L VLDATTGQN L Q
Sbjct: 288 IAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK---HGPLDEILLVLDATTGQNGLVQ 344

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF  + F  
Sbjct: 345 ARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVD 404

Query: 309 VITG 312
            + G
Sbjct: 405 ALIG 408


>gi|90020849|ref|YP_526676.1| signal recognition particle subunit FFH/SRP54 (srp54) /
           transcription elongation factor GreB [Saccharophagus
           degradans 2-40]
 gi|89950449|gb|ABD80464.1| signal recognition particle subunit FFH/SRP54 (srp54) /
           transcription elongation factor GreB [Saccharophagus
           degradans 2-40]
          Length = 495

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      I    RL+ D +++ L D+   L+ +D+ + V ++   ++  +   
Sbjct: 28  FENLSDRLSRSFKKITGKARLNHDNIKDALSDVRKALLEADVALPVVKEFTGQVRKRAQG 87

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+ L  V   + +++   ++  N   +  P V+L+ G+ G GKTT + KL
Sbjct: 88  QEVSRALNPGQQFLKIVESELTQIMGEANEKLNL-AAQPPAVVLMAGLQGAGKTTSVAKL 146

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KVM+ + D +R AAI QL+  A    A+F  S+ G +   +A  A  QA+
Sbjct: 147 ARFLREREKKKVMVVSADVYRPAAIKQLETLATEVEAEFFPSDAGQNPVDIAKNALAQAK 206

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
              VDVL++DTAGRLH +  LM  I  +         HA   P   L V+DA  GQ+A+ 
Sbjct: 207 KLHVDVLLVDTAGRLHVDEALMEEIQAI---------HAAVNPIETLFVIDAMIGQDAVN 257

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+I+TK DG ARGG  + +      P+ FLGVGE    LEPF     +
Sbjct: 258 TAKAFNDALPLTGVILTKTDGDARGGAALSVRHVTGKPIKFLGVGEKTEALEPFHPDRLA 317

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 318 SRILGMGD 325


>gi|322712654|gb|EFZ04227.1| signal recognition particle 54 kDa protein [Metarhizium anisopliae
           ARSEF 23]
          Length = 522

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 151/304 (49%), Gaps = 28/304 (9%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80
           ++   +T++   + LD    D + +E+   L+ +D+ V +  ++ + + +    KD+   
Sbjct: 9   RINAAVTNLTRDQNLDEKAFDNMLKEICAALLEADVNVKLVMQLRKSIKSTVNFKDLPPA 68

Query: 81  ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                 +Q+ ++D  EL+ +++ P ++PF      +P+VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-QLVDPHAEPFKPK-KGKPNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +  L   DTFR+ A DQLK  A +    +  S   +D AA+A     Q + +K 
Sbjct: 125 YQTRGFRACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAAVARAGVDQFKKEKF 184

Query: 195 DVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           DV+I+DT+GR    S L   M  I   IR         P   + VLDA+ GQ A  Q + 
Sbjct: 185 DVIIVDTSGRHRQESALFQEMIDIQTAIR---------PDETIMVLDASIGQQAESQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK DG A GGG I  V     P+ F+G GE + DLE F  + F   + 
Sbjct: 236 FKEAADFGAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDLERFAPQQFVQKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|284998272|ref|YP_003420040.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus L.D.8.5]
 gi|284446168|gb|ADB87670.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus L.D.8.5]
          Length = 208

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 122/199 (61%), Gaps = 6/199 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S +P++I+  G+NGVGKTT I K +  +   GL  +++A DTFR+AA +QL+I A     
Sbjct: 10  STKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSCIISASDTFRAAAQEQLEIHARNLEI 69

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +  + G D A++AY+A + A+++ +DV++IDTAGR+H ++ L+  + +++ + +    
Sbjct: 70  PLIKGKYGGDPASVAYDAIRAAKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNITR---- 125

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+  + VLD+  G +AL Q + F    G   +I+TK+D   +GG ++ +      PV 
Sbjct: 126 --PNLKILVLDSLGGNDALEQAKYFENNVGFDLVILTKVDADVKGGVILSLAYELNKPVG 183

Query: 288 FLGVGEGINDLEPFVAKDF 306
           +LGVG+  +DL PF A+ F
Sbjct: 184 YLGVGQTYDDLIPFNAEWF 202


>gi|45358246|ref|NP_987803.1| signal recognition particle-docking protein FtsY [Methanococcus
           maripaludis S2]
 gi|44921003|emb|CAF30239.1| signal recognition particle receptor SRalpha [Methanococcus
           maripaludis S2]
          Length = 383

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 113/192 (58%), Gaps = 6/192 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            P V+L VG+NG GKTT I KL+  + + G   ++AAGDTFR+ AI+QL+     T    
Sbjct: 175 EPAVLLFVGINGTGKTTSISKLAYILKEKGYSAVMAAGDTFRAGAIEQLEEHGKNTGIKV 234

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +  + G+D+AA+ Y+A   A+AK ++V++ DTAGR   N  LM  I K++RV K      
Sbjct: 235 IKHQKGADSAAVIYDAISHAKAKGLNVVLADTAGRQTTNINLMDEIKKVVRVTK------ 288

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ V D+  G +A+ Q E F+      G I+TK D  A+GG  + I  +   P+ F+
Sbjct: 289 PDLIIFVGDSLAGNDAISQAEEFNNTININGAILTKTDADAKGGAALSIAYSIGKPILFM 348

Query: 290 GVGEGINDLEPF 301
           GVG+  +DL+ F
Sbjct: 349 GVGQRYSDLQEF 360


>gi|171186108|ref|YP_001795027.1| signal recognition particle-docking protein FtsY [Thermoproteus
           neutrophilus V24Sta]
 gi|170935320|gb|ACB40581.1| signal recognition particle-docking protein FtsY [Thermoproteus
           neutrophilus V24Sta]
          Length = 305

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 111/197 (56%), Gaps = 6/197 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+V++ +G NG GKTT + KL+  + + G +V+ AA DTFR+ A +QL+    R     
Sbjct: 109 RPYVVMFLGPNGYGKTTTLAKLAFNLQEMGFRVVAAAADTFRAGAREQLEEHGRRVGFRV 168

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V    GSD AA+AY+A + A+++    ++IDTAGR+H ++ LM  + K+ RV +      
Sbjct: 169 VGGPYGSDPAAVAYDAVQHARSRGYHFVLIDTAGRMHTDANLMEELRKIQRVAE------ 222

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH  + V DA  G  AL     +       G+I TK+D   +GG ++  +   K PVYFL
Sbjct: 223 PHLSIFVFDAQLGNEALEIARYYSKYVRIDGMIATKVDAYPKGGSILTFMYVLKRPVYFL 282

Query: 290 GVGEGINDLEPFVAKDF 306
           GVG+   DL  F   ++
Sbjct: 283 GVGQTYRDLVKFSKSEY 299


>gi|270158989|ref|ZP_06187645.1| signal recognition particle protein [Legionella longbeachae D-4968]
 gi|289166170|ref|YP_003456308.1| signal recognition particle protein Ffh [Legionella longbeachae
           NSW150]
 gi|269987328|gb|EEZ93583.1| signal recognition particle protein [Legionella longbeachae D-4968]
 gi|288859343|emb|CBJ13279.1| putative signal recognition particle protein Ffh [Legionella
           longbeachae NSW150]
          Length = 459

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 159/289 (55%), Gaps = 22/289 (7%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           R  ++ V+  L ++   L+ +D+ + V ++ +E++  K   ++V        +  ++++D
Sbjct: 21  RLTEENVQHALREVRLSLLEADVALPVIKEFIEQVKQKALGQEVLTHLNPDQAFVKIVHD 80

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAA 146
             ELIH M    ++  N+  +  P + L+ G+ G GKTT   KL++ + ++   KVM+ +
Sbjct: 81  --ELIHVMGDERAE-LNFK-TQPPAIFLMAGLQGSGKTTSTAKLARYLKESENKKVMVVS 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AAI QLK+ A++    F  +E+      +A +A   A+ + +DVLIIDTAGRLH
Sbjct: 137 VDVYRPAAIQQLKVLAEQIGVGFFPAEVSEQPLTIARKALDAAKKQYMDVLIIDTAGRLH 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            ++ +MA I ++ + +       P   L V+D+ TGQ+A    + FH     TG+I+TK 
Sbjct: 197 IDADMMAEIKELHQAVN------PIETLFVVDSMTGQDAANTAKAFHEALPLTGVILTKT 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG ARGG  + +      P+ F+G GE ++ LEPF  +  ++ I G  D
Sbjct: 251 DGDARGGAALSVKQITGQPIKFIGSGEKVDALEPFHPERVASRILGMGD 299


>gi|75910555|ref|YP_324851.1| signal recognition particle subunit FFH/SRP54 (srp54) [Anabaena
           variabilis ATCC 29413]
 gi|75704280|gb|ABA23956.1| signal recognition particle subunit FFH/SRP54 (srp54) [Anabaena
           variabilis ATCC 29413]
          Length = 490

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 150/295 (50%), Gaps = 29/295 (9%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D IS   + D +RE +   L+ +D+ + V +  + E+  K    +V           +++
Sbjct: 20  DKISESNIQDALRE-VRRALLEADVNLQVVKDFISEVEAKAQGAEVISGVRPDQQFIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL+     +   +P ++L+ G+ G GKTT   KL+  +       
Sbjct: 79  YD--ELVQVMGEENVPLA-----EVEQKPTIVLMAGLQGTGKTTATAKLALHLRKLERSC 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200
           +L A D +R AAIDQL     +   D    E+GSDA    +A +  ++A+A+ V+ +IID
Sbjct: 132 LLVATDVYRPAAIDQLLTLGKQI--DVPVFELGSDADPVEIARQGVERAKAEGVNTVIID 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  +MA + ++   ++      PH  L V+D+ TGQ A      FH   G TG
Sbjct: 190 TAGRLQIDEDMMAELARIKETVQ------PHETLLVVDSMTGQEAANLTRTFHEQIGITG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I+TKMDG +RGG  + +      P+ F+GVGE +  L+PF     ++ I G  D
Sbjct: 244 AILTKMDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298


>gi|126209206|ref|YP_001054431.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae L20]
 gi|190151079|ref|YP_001969604.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|307246672|ref|ZP_07528742.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307251039|ref|ZP_07532963.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307255656|ref|ZP_07537460.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257838|ref|ZP_07539595.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307260108|ref|ZP_07541818.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307264443|ref|ZP_07546029.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097998|gb|ABN74826.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|189916210|gb|ACE62462.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|306852372|gb|EFM84607.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306856869|gb|EFM89001.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861333|gb|EFM93323.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306863744|gb|EFM95670.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865754|gb|EFM97632.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306870259|gb|EFN02017.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 463

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  L  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVNKSLTPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++ RVL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|225874709|ref|YP_002756168.1| signal recognition particle protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225792689|gb|ACO32779.1| signal recognition particle protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 459

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 152/288 (52%), Gaps = 21/288 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           ++ ++E L ++   L+ +D+ + VA++++E +  +   + V       ++V+  V + + 
Sbjct: 24  EENIQEALREIRVALLEADVNLNVAKELIEHIRERAVGQQVMTALSPTEQVIKIVRDELV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            +L   +  F +  S  P VIL+ G+ G GKTT  GKL+  +   G + ML + D +R A
Sbjct: 84  DLLGKDTARFQF-ASRPPTVILMAGLQGSGKTTTSGKLAAWLKKGGHRPMLVSVDVYRPA 142

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAA------LAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           A +QLK+ A+  +A     +   +AA       LA EA ++A     D LI+DTAGRLH 
Sbjct: 143 AREQLKVVANSINAKIYEGDTKGEAAGTALVERLAKEARREAVITGCDTLIVDTAGRLHI 202

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  LM  + ++  +L      AP  +L V DA TGQ+A+R  + FH     TG+++TKMD
Sbjct: 203 DDNLMDEMTRLKALL------APQEILFVADAMTGQDAVRSAQEFHRKLALTGVVLTKMD 256

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G ARGG  + I      PV F+G GE  +  EPF      + I G  D
Sbjct: 257 GDARGGAALSIRHVTGQPVKFIGTGEKPDAFEPFHPDRIVSRILGMGD 304


>gi|148827249|ref|YP_001292002.1| Signal recognition particle protein [Haemophilus influenzae PittGG]
 gi|148718491|gb|ABQ99618.1| Signal recognition particle protein [Haemophilus influenzae PittGG]
          Length = 462

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQHELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|33240809|ref|NP_875751.1| signal recognition particle protein [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238338|gb|AAQ00404.1| Signal recognition particle GTPase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 485

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 139/271 (51%), Gaps = 18/271 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFN--- 104
           L+ +D+ ++V ++ V+E+  K    +V       Q+ +    E++H+ L+ +    N   
Sbjct: 38  LLEADVSLSVVKQFVQEVRDKAIGAEVVRGVNPGQKFI----EVVHQELVEVMGGANSPL 93

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
            D + +P VIL+ G+ G GKTT   KL   + D GLK ++ A D +R AAIDQL     +
Sbjct: 94  ADSTKKPSVILMAGLQGAGKTTAAAKLGLYLKDKGLKPLMVAADVYRPAAIDQLNTLGKQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            + +       S    +A    K+AQ +  D LI+DTAGRL  +  +M    +M+R+   
Sbjct: 154 INVEVFSLGKESKPEDIAASGLKKAQEEDFDTLIVDTAGRLQIDEEMM---NEMVRIRSA 210

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           +D   P  VL V+D+  GQ A      FH   G TG ++TK+DG +RGG  + I      
Sbjct: 211 VD---PDEVLLVVDSMIGQEAADLTRAFHEKVGITGAVLTKLDGDSRGGAALSIRKVSGQ 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +  L+PF  +  +  I G  D
Sbjct: 268 PIKFIGTGEKVEALQPFHPERMAGRILGMGD 298


>gi|18313822|ref|NP_560489.1| signal recognition particle protein [Pyrobaculum aerophilum str.
           IM2]
 gi|18161384|gb|AAL64671.1| signal recognition particle protein (docking protein), probable
           [Pyrobaculum aerophilum str. IM2]
          Length = 305

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 112/197 (56%), Gaps = 6/197 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP V++ +G NG GKTT + KL+  + + G +V+ AA DTFR+ A +QL+    R     
Sbjct: 109 RPVVVMFLGPNGYGKTTTLAKLAFNLQEMGFRVVAAAADTFRAGAREQLEEHGKRVGFKV 168

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G+D A++AY+A + A+A+    ++IDTAGR+H ++ LM  + K+ RV +      
Sbjct: 169 ISGPYGADPASVAYDALQHAKARGYHFVLIDTAGRMHTDANLMEELRKIQRVTE------ 222

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH  + V DA  G  AL   + +       G+I TK+D   +GG ++  +   K PVYFL
Sbjct: 223 PHYSIFVFDAQLGNEALEIAKYYSKYVKIDGMIATKVDAYPKGGSILTFIYVLKRPVYFL 282

Query: 290 GVGEGINDLEPFVAKDF 306
           GVG+   DL  F  +++
Sbjct: 283 GVGQTYRDLVKFSKQEY 299


>gi|227824776|ref|ZP_03989608.1| signal recognition particle protein [Acidaminococcus sp. D21]
 gi|226905275|gb|EEH91193.1| signal recognition particle protein [Acidaminococcus sp. D21]
          Length = 448

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 156/285 (54%), Gaps = 27/285 (9%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKM 95
           ++E L D+   L+ +D+      K+V+E  TK   + V  Q++  +++      +++H+ 
Sbjct: 28  LKETLRDVRLALLEADVNF----KVVKEFTTK-IKERVQGQKIDPNLTAGQYIVKVVHEE 82

Query: 96  LMPL--SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           L+ L   +     FS + P VI++ G+ G GKTT IGKL+  +   G K ++ AGD +R 
Sbjct: 83  LIALLGGEQSKLQFSSNPPTVIMLAGLQGAGKTTSIGKLANYLRKNGKKPLMVAGDVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAA--ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           AAI QL++       D     +GS+ +   +A EA K+A A   D ++IDTAGRLH +  
Sbjct: 143 AAITQLEVIG--KELDMPVFSMGSEVSPVTIAQEAIKRANALLCDTVLIDTAGRLHIDEK 200

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +  +   +       P  +L V+DA TGQ+A+   E F+   G TGLI+TK+DG A
Sbjct: 201 LMDELKNIKSAVH------PDEILLVVDAMTGQDAVTVAEAFNKALGITGLIVTKLDGDA 254

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG ++ +      PV F+G+GE ++ L+PF     ++ I G  D
Sbjct: 255 RGGAVLSVKSVADCPVKFVGMGEKLDALQPFYPDRMASRILGMGD 299


>gi|150021672|ref|YP_001307026.1| signal recognition particle protein [Thermosipho melanesiensis
           BI429]
 gi|149794193|gb|ABR31641.1| signal recognition particle protein [Thermosipho melanesiensis
           BI429]
          Length = 435

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 138/271 (50%), Gaps = 21/271 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAK--------DVSVQRVLYDVSELIHKMLMPLSKPFN 104
           L+ +D+   V ++ +E++  K   +        D    ++L D  ELI   LM   +P  
Sbjct: 38  LLEADVNYKVVKEFIEDVKKKALGEKVLRSLTPDQMFIKILRD--ELIK--LMGEKQPLK 93

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
               H P  I++VG+ G GKTT   KL+  +   G K  L A DT+R AAIDQL     +
Sbjct: 94  M--IHSPSYIMMVGLQGSGKTTSAAKLANLLKKKGRKPYLVAADTYRPAAIDQLITLGKK 151

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                 C +       +  EA K+ +    DV+I DTAGRLH ++ +M  + ++  +L  
Sbjct: 152 IDVPVYCGD-RKHPIKIVEEALKEVKDSGYDVVIFDTAGRLHIDNEMMNELVEIKEIL-- 208

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
               +P  +L V+DA TGQ+A+   + F+     TG ++TKMDG ARGG ++ I      
Sbjct: 209 ----SPDEILMVVDAMTGQDAVNSAKTFNEKLDVTGFVVTKMDGDARGGVILSIRYVTNK 264

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           PV F+GVGE I DLE F  +  ++ I G  D
Sbjct: 265 PVKFIGVGEKIEDLEEFYPERIASRILGLGD 295


>gi|17229444|ref|NP_485992.1| signal recognition particle protein [Nostoc sp. PCC 7120]
 gi|17131042|dbj|BAB73651.1| signal recognition particle protein [Nostoc sp. PCC 7120]
          Length = 490

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 150/295 (50%), Gaps = 29/295 (9%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D IS   + D +RE +   L+ +D+ + V +  + E+  K    +V           +++
Sbjct: 20  DKISESNIQDALRE-VRRALLEADVNLQVVKDFISEVEAKAQGAEVISGVRPDQQFIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL+     +   +P ++L+ G+ G GKTT   KL+  +       
Sbjct: 79  YD--ELVQVMGEENVPLA-----EVEQKPTIVLMAGLQGTGKTTATAKLALHLRKLERSC 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200
           +L A D +R AAIDQL     +   D    E+GSDA    +A +  ++A+A+ V+ +IID
Sbjct: 132 LLVATDVYRPAAIDQLLTLGKQI--DVPVFELGSDADPVEIARQGVERAKAEGVNTVIID 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  +MA + ++   ++      PH  L V+D+ TGQ A      FH   G TG
Sbjct: 190 TAGRLQIDEDMMAELARIKETVQ------PHETLLVVDSMTGQEAANLTRTFHEQIGITG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I+TKMDG +RGG  + +      P+ F+GVGE +  L+PF     ++ I G  D
Sbjct: 244 AILTKMDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298


>gi|319441354|ref|ZP_07990510.1| signal recognition particle-docking protein FtsY [Corynebacterium
           variabile DSM 44702]
          Length = 516

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 171/287 (59%), Gaps = 9/287 (3%)

Query: 31  GITDIISSRRLDDGVREELEDLLIRSDIG----VAVAQKIVEELLTKRYAKDVSVQRVLY 86
           G+  I+S+  LD+   EE+ED+LI +D+G    VAV +K+ + + T+    +   + +L 
Sbjct: 234 GVLGILSAGDLDEDAWEEIEDMLIMADLGTKTTVAVVEKLRDRIATEGVENEAQARAMLR 293

Query: 87  DVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           +   LI      L +  +   ++ +P VI+VVGVNG GKTT  GKLS+ +   G  V+L 
Sbjct: 294 EC--LIEAARPELDRSIHAMPYNGKPAVIMVVGVNGTGKTTTTGKLSRVLVGMGHSVLLG 351

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR+AA DQL+ W  R  A+ V  + G+D A++A++A  +   + VDV+++DTAGRL
Sbjct: 352 AADTFRAAAADQLETWGRRVGAETVRGKEGADPASVAFDAVAKGVEEGVDVVVVDTAGRL 411

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H +  LM  +GK+ RV+++        V+ VLDAT GQN L Q   F  V   +G+ +TK
Sbjct: 412 HTSVGLMDQLGKVKRVVEK--KAKVDEVILVLDATVGQNGLMQARTFRDVVDISGVALTK 469

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +DG+A+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 470 LDGSAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESFVDALLG 516


>gi|289192492|ref|YP_003458433.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938942|gb|ADC69697.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 451

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 22/287 (7%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIH 93
           ++L   V ++++  LI++D+ V +  K+ +E+    L ++  K +S  + ++  V E + 
Sbjct: 24  KKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K+L   +K    +   + ++IL+VG+ G GKTT   KL++ +   GLK  L A DT+R A
Sbjct: 84  KLLGEEAKKLELN-PKKQNIILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA 142

Query: 154 AIDQLKIWADRTSADFVCSEIGS----DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           A +QLK  A++        E  +    D      E FK+A     DVLIIDTAGR     
Sbjct: 143 AYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKKA-----DVLIIDTAGRHKEEK 197

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTKMDG 268
            L+  + ++  +        P  ++ V+D T GQ A  Q + F    G  G +I+TK+DG
Sbjct: 198 GLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDG 251

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +A+GGG +  V   K P+ F+G+GEGI+DLEPF  K F + + G  D
Sbjct: 252 SAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGD 298


>gi|189500233|ref|YP_001959703.1| signal recognition particle protein [Chlorobium phaeobacteroides
           BS1]
 gi|189495674|gb|ACE04222.1| signal recognition particle protein [Chlorobium phaeobacteroides
           BS1]
          Length = 449

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 143/268 (53%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   VA+K V+E+ ++   +DV       Q ++  VS+ + +++    KP N   
Sbjct: 38  LLSADVNYKVAKKFVDEVRSRALGQDVVKSVSPAQMIVKIVSDELTEIMGGEHKPLNLTT 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +  P V++V G+ G GKTT   KL+K++   G   +LAA D +R AA++QLK   ++   
Sbjct: 98  NKLPSVVMVAGLQGSGKTTFCAKLAKRLKKNGKHPLLAAADVYRPAAVEQLKTLGEQIEV 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                E+  DA  +A +A + A+    DV+I+DTAGRL  +  +MA    +   LK    
Sbjct: 158 PVFSLEV-KDALKVALDAVESARNNGNDVVIVDTAGRLQVDEGMMAEAEALKDQLK---- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+DA  GQ A+   ++F+      G+++TK+DG ARGG  + I      P+ 
Sbjct: 213 --PEELLFVVDAMIGQEAVNTAKVFNERLDFDGVVLTKLDGDARGGSALSIKQVVDKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+ VGE ++DL+ F     +  I G  D
Sbjct: 271 FMSVGEKVDDLDLFYPDRMAQRILGMGD 298


>gi|85058523|ref|YP_454225.1| signal recognition particle protein [Sodalis glossinidius str.
           'morsitans']
 gi|84779043|dbj|BAE73820.1| signal recognition particle protein [Sodalis glossinidius str.
           'morsitans']
          Length = 453

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 160/309 (51%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L   + +I    RL +D +++ L ++   L+ +D+ + V +    ++ E  L 
Sbjct: 2   FDNLSDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESALG 61

Query: 73  KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           +   K ++  +    +  SEL++ M    +   N   +H P V+L+ G+ G GKTT +GK
Sbjct: 62  QEVNKSLTPGQEFVKIVRSELVNAM-GDENNSLNL-AAHPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A+    DF  S+ G     +  +A  QA
Sbjct: 120 LGKYLREKQKKKVLVVSADVYRPAAIKQLETLAETVGVDFFPSDAGQKPIDIVNQALNQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K  DVL++DTAGRLH +  +MA I         +  HA   P   L V+DA TGQ+A 
Sbjct: 180 KLKFYDVLLVDTAGRLHVDETMMAEI---------IAIHASITPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+I+TK+DG ARGG  + I      P+ F+GVGE  + LEPF     
Sbjct: 231 NTAKAFNQALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGVGEKTDALEPFYPDRL 290

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 291 AGRILGMGD 299


>gi|145591809|ref|YP_001153811.1| signal recognition particle-docking protein FtsY [Pyrobaculum
           arsenaticum DSM 13514]
 gi|145283577|gb|ABP51159.1| signal recognition particle-docking protein FtsY [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 305

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 155/311 (49%), Gaps = 31/311 (9%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEE 69
             +L K F+    K  E +   +    L +  V E + +L   LI +D+ V VA  + EE
Sbjct: 2   FNRLKKAFS----KFVESVVSTVKEDTLSEKDVNEVISNLYFDLIENDVAVEVADAVTEE 57

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDF---------SHRPHVIL 115
           L  K+    V V R   D   ++ K ++      LS   + DF         + RP  ++
Sbjct: 58  L--KKRLIGVKVPR-FGDKEAVVKKAVLDALMGVLSDVPDVDFYQDSKNRLETSRPVTVM 114

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            +G NG GKTT + KL+  + + G +V+ AA DTFR+ A +QL+    R     +    G
Sbjct: 115 FLGPNGYGKTTTLAKLAYHLQERGFRVVAAAADTFRAGAREQLEEHGRRVGFRVIGGPYG 174

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++AY+A + A++K    ++IDTAGR+H ++ LM  + K+ RV++      P   + 
Sbjct: 175 ADPASVAYDAVQHARSKGFHYVLIDTAGRMHTDANLMEELRKIQRVVE------PQYSIF 228

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V DA  G  AL     +       G+I  K+D   +GG ++  + T K PVYFLGVG+  
Sbjct: 229 VFDAQLGNEALEIARYYSKYVKIDGMIAAKVDAYPKGGSILTFLYTLKRPVYFLGVGQSY 288

Query: 296 NDLEPFVAKDF 306
            DL  F  +++
Sbjct: 289 KDLVQFTKQEY 299


>gi|229579653|ref|YP_002838052.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus Y.G.57.14]
 gi|228010368|gb|ACP46130.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus Y.G.57.14]
          Length = 208

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 122/199 (61%), Gaps = 6/199 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S +P++I+  G+NGVGKTT I K +  +   GL  +++A DTFR+AA +QL+I A     
Sbjct: 10  STKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSCIISASDTFRAAAQEQLEIHARNLEI 69

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +  + G D A++AY+A + A+++ +DV++IDTAGR+H ++ L+  + +++ + +    
Sbjct: 70  PLIKGKYGGDPASVAYDAIRAAKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNITR---- 125

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+  + VLD+  G +AL Q + F    G   +I+TK+D   +GG ++ +      PV 
Sbjct: 126 --PNLKILVLDSLGGNDALEQAKYFKNNVGFDLVILTKVDADVKGGVILSLAYELNKPVG 183

Query: 288 FLGVGEGINDLEPFVAKDF 306
           +LGVG+  +DL PF A+ F
Sbjct: 184 YLGVGQTYDDLIPFNAEWF 202


>gi|298246119|ref|ZP_06969925.1| signal recognition particle protein [Ktedonobacter racemifer DSM
           44963]
 gi|297553600|gb|EFH87465.1| signal recognition particle protein [Ktedonobacter racemifer DSM
           44963]
          Length = 507

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 161/306 (52%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSR-RL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
           F S + +L EGI   +  R RL ++ V   L ++   LI +D+ + VA++ V+ +  K  
Sbjct: 4   FESLTKRL-EGIFQNLEGRGRLTEEDVNSALREVRIALIEADVNLKVARQFVDRVKEKAI 62

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+VL  V + + ++L    +    D +  P +I++VG+ G GKTT   K
Sbjct: 63  GADVMGSLSPAQQVLSIVHDELVEVLGGTGESNKLDTNGNPTIIMLVGLQGSGKTTSAAK 122

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +    G + +L A D +R AA++QLK    +         +GSD   +   +   A
Sbjct: 123 LANYLRKQNGSRPLLVAADMYRPAAVNQLKTLGKQIQVPVYSEPMGSDPVDICVHSLDYA 182

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  +V+I+DTAGRL+ +  +M    +++ + +R+    PH VL V DA TGQ A+R  
Sbjct: 183 REQACNVIILDTAGRLNIDERMMQ---EVVNIRERV---RPHEVLLVADAMTGQEAVRVA 236

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TKMDG ARGG  + I     +PV F+ +GE ++ ++PF     +  
Sbjct: 237 KDFNDAVSLTGMVLTKMDGDARGGAALSIRTVTSVPVKFMALGEKLDAIQPFYPDRLAQR 296

Query: 310 ITGCLD 315
           I G  D
Sbjct: 297 ILGMGD 302


>gi|148360983|ref|YP_001252190.1| signal recognition particle protein Ffh [Legionella pneumophila
           str. Corby]
 gi|148282756|gb|ABQ56844.1| signal recognition particle protein Ffh [Legionella pneumophila
           str. Corby]
          Length = 458

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 155/290 (53%), Gaps = 24/290 (8%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           R  +D ++  L ++   LI +D+ + V ++ +E++  K   ++V        +  ++++D
Sbjct: 21  RLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLGQEVLTSLNPDQAFIKIVHD 80

Query: 88  VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLA 145
             ELIH M     +    D+ +  P V L+ G+ G GKTT   KL++ + +    K+M+A
Sbjct: 81  --ELIHVMG---DERVELDYKTQPPAVFLMAGLQGSGKTTSTAKLARYLKETENKKIMMA 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           + D +R AAI QLK+ A++    F  S+       +A +A + A+ + VDVLI+DTAGRL
Sbjct: 136 SVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESARKQYVDVLILDTAGRL 195

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H +  +M+ I  + + +       P   L V+D+ TGQ+A    + FH     TG+I+TK
Sbjct: 196 HVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAKAFHEALPLTGVILTK 249

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            DG ARGG  + +      P+ F+G GE I  +EPF  +  ++ I G  D
Sbjct: 250 TDGDARGGAALSVKQITGKPIKFIGSGEKIEAVEPFHPERIASRILGMGD 299


>gi|124028446|ref|YP_001013766.1| Signal recognition particle GTPase [Hyperthermus butylicus DSM
           5456]
 gi|123979140|gb|ABM81421.1| Signal recognition particle GTPase [Hyperthermus butylicus DSM
           5456]
          Length = 312

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 158/307 (51%), Gaps = 29/307 (9%)

Query: 27  KLKEGITDIISSRRLDDGVREE-----LEDLLIR---SDIGVAVAQKIV----EELLTKR 74
           K  + + ++  +R L    REE     L++L+I    SD+ + VA++I     EEL+ ++
Sbjct: 12  KFVDSVVEVAVTREL----REEDIAPLLDELVIELAESDVALEVAEEIANRLREELIGRK 67

Query: 75  YAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTV 127
             +   V+  V+  + + I  +L    +P +     R      P  IL  GVNGVGKTT 
Sbjct: 68  IPRFSDVRSLVVESLEKAIVDVLSRGYQPLDLIAEARSRSPGNPLRILFFGVNGVGKTTT 127

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I K +      G+  ++AA DT+R+ A +QL+  A++ S  F+    G+D A++ Y+A +
Sbjct: 128 IAKFAYMFKQNGITPVIAAADTYRAGAQEQLRRHAEKLSVPFIGGRYGADPASVVYDAIE 187

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+   V++ DTAGR+H +  LM  + K+ RV K      P     V+DA TG +A+ 
Sbjct: 188 YARARGYRVILADTAGRMHTDRDLMEELRKITRVAK------PDYRALVVDALTGNDAVE 241

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F    G   +I+TK+D   +GG  + +      P+ F+G G+   DLE F  K ++
Sbjct: 242 QARFFDEAVGIDFIILTKVDADVKGGTALSVAAVTGKPILFVGTGQKYEDLELFDPKRYT 301

Query: 308 AVITGCL 314
             I G L
Sbjct: 302 EKIIGEL 308


>gi|330831191|ref|YP_004394143.1| GTP-binding export factor [Aeromonas veronii B565]
 gi|328806327|gb|AEB51526.1| GTP-binding export factor [Aeromonas veronii B565]
          Length = 458

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 159/307 (51%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72
           F + + +L   + ++    RL +D ++E L ++   L+ +D+ + V +  V    E  + 
Sbjct: 2   FENLTERLSRTLRNVSGRGRLTEDNIKETLREVRMALLEADVALPVVRDFVARVKERAVG 61

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIG 129
           +  AK +S  +      +++H  L+ +    N   +     P +IL+ G+ G GKTT +G
Sbjct: 62  QEVAKSLSPGQAFI---KIVHGELVTVMGEANEQLNLAAQPPAIILMAGLQGAGKTTTVG 118

Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + + +  KV++ + D +R AAI QL+  A     DF  S+       +A  A  Q
Sbjct: 119 KLAKLLKERSKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSDASQKPVDIATAAIDQ 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+I+DTAGRLH +S +MA I  +   +K      P   L V+DA TGQ+A   
Sbjct: 179 ARKKFYDVVIVDTAGRLHVDSEMMAEIQDLHATIK------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+I+TK DG ARGG  + +      PV F+G+GE  + LEPF     ++
Sbjct: 233 AKAFNEALPLTGVILTKADGDARGGAALSVRHITGKPVKFIGMGEKTDALEPFHPDRLAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|291278684|ref|YP_003495519.1| signal recognition particle protein [Deferribacter desulfuricans
           SSM1]
 gi|290753386|dbj|BAI79763.1| signal recognition particle protein [Deferribacter desulfuricans
           SSM1]
          Length = 447

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 112/205 (54%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P  I++VG+ G GKTT  GKL+K     G  V+L A D +R AAIDQL+I   +   D  
Sbjct: 102 PTKIMLVGLQGSGKTTTAGKLAKYFQKNGKDVLLVADDIYRPAAIDQLEILGKQLKVDVF 161

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  +A EA + A++   DV+IIDTAGRLH +  LM  +  +   +       P
Sbjct: 162 SKRDEQDAVKIAKEAVQHAKSAAKDVVIIDTAGRLHIDETLMEELKNIKEAIN------P 215

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V DA TGQ+A+   + F+ +   TG+I+TK+DG ARGG  + I      P+ F+G
Sbjct: 216 DEILFVADAMTGQDAVNVAKTFNEMLDITGVILTKLDGDARGGAALSIREVTGKPLKFVG 275

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE ++  EPF     ++ I G  D
Sbjct: 276 TGEKLDAFEPFYPDRMASRILGMGD 300


>gi|89895345|ref|YP_518832.1| hypothetical protein DSY2599 [Desulfitobacterium hafniense Y51]
 gi|89334793|dbj|BAE84388.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 457

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 159/304 (52%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+E    + S  +L +  V E + ++   L+ +D+   V +  V ++  +   
Sbjct: 6   FQGLSEKLQETFKRLKSKGKLTEADVNEAMREVRMALLEADVNFKVVKDFVAKVKERSIG 65

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V+E +  ++  +S   N   S  P VI++VG+ G GKTT   KL
Sbjct: 66  QEVLESLSPGQQVIKIVNEEMVALMGGVSSKINIS-SKPPTVIMLVGLQGAGKTTHGAKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL++  ++     V S    +   +A  + + A +
Sbjct: 125 ANMLKKQGKHPLLVACDIYRPAAIKQLEVLGEQIKVP-VFSLGQENPVKIAAASLQHANS 183

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DV+IIDTAGRLH N  LM  + ++   +K      PH +L V+DA TGQ+A+   E 
Sbjct: 184 QGLDVVIIDTAGRLHINEELMGELREIKVSVK------PHEILLVVDAMTGQDAVNVAES 237

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G  G+I+TK+DG  RGG  + +      P+ F GVGE ++ +EPF  +  ++ I 
Sbjct: 238 FHNELGVDGIILTKLDGDTRGGAALSVKAVTGCPIKFAGVGEKMDAIEPFFPERMASRIL 297

Query: 312 GCLD 315
           G  D
Sbjct: 298 GMGD 301


>gi|159904596|ref|YP_001548258.1| signal recognition particle-docking protein FtsY [Methanococcus
           maripaludis C6]
 gi|159886089|gb|ABX01026.1| signal recognition particle-docking protein FtsY [Methanococcus
           maripaludis C6]
          Length = 379

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/192 (38%), Positives = 113/192 (58%), Gaps = 6/192 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            P ++L VG+NG GKTT I KL+  + + G  V++AAGDTFR+ AI+QL+     T    
Sbjct: 171 EPAILLFVGINGTGKTTSISKLAYILKERGYSVVMAAGDTFRAGAIEQLEEHGKNTDIKV 230

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +  + G+D+AA+ Y+A   ++AK ++V++ DTAGR   N  LM  I K++RV K      
Sbjct: 231 IKHQKGADSAAVIYDAINHSKAKGINVVLADTAGRQTTNINLMDEIKKVVRVTK------ 284

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ V D+  G +A+ Q E F+      G I+TK D  A+GG  + I      P+ F+
Sbjct: 285 PDLIIFVGDSLAGNDAISQAEEFNNAINIHGAILTKTDADAKGGAALSIAYAIGKPILFM 344

Query: 290 GVGEGINDLEPF 301
           GVG+  +DL+ F
Sbjct: 345 GVGQRYSDLQEF 356


>gi|219851207|ref|YP_002465639.1| signal recognition particle-docking protein FtsY [Methanosphaerula
           palustris E1-9c]
 gi|219545466|gb|ACL15916.1| signal recognition particle-docking protein FtsY [Methanosphaerula
           palustris E1-9c]
          Length = 409

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 140/265 (52%), Gaps = 16/265 (6%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAK-----DVSVQRVLYDVSELIHKML 96
           V +ELE +L+ +D+ + V ++I+  +   L   + K     D+ V   L D   L+  + 
Sbjct: 139 VLDELEMVLLENDVALPVTEEILRHIRHDLIGSHRKIGTSPDLIVMETLKDA--LLDVLG 196

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
                P       RP  IL  GVNG GKTT + K+   +   G  V++ AGDTFR+ AI+
Sbjct: 197 EGFDLPAYIRTHDRPVKILFTGVNGTGKTTTVAKVGAFLLKNGFSVVIGAGDTFRAGAIE 256

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           Q+ I A+R     +  + G D +A+ ++  + A + ++DV++ DTAGR HN + LM  + 
Sbjct: 257 QIDIHAERLGIKVIQHQQGGDPSAVLFDTVQYAISHQIDVVLADTAGRFHNRANLMNQLA 316

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+ RV+K      P  V+ V +A  G +A+ + E F    G   +++TK D   +GG  I
Sbjct: 317 KVKRVMK------PDLVVYVDEAVAGNDAVIRAEEFEKTVGADAVVLTKADMDPKGGAAI 370

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I  T   P+ FLGVG+G  DL PF
Sbjct: 371 SIAHTIGKPLMFLGVGQGYEDLIPF 395


>gi|164658964|ref|XP_001730607.1| hypothetical protein MGL_2403 [Malassezia globosa CBS 7966]
 gi|159104503|gb|EDP43393.1| hypothetical protein MGL_2403 [Malassezia globosa CBS 7966]
          Length = 617

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 144/297 (48%), Gaps = 23/297 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEE--------LLTKR 74
           +L +  +D+     LD    D + +++   L+ SD+ V + QK+ ++        L  K 
Sbjct: 9   RLNQAFSDLQRQPTLDAASVDQLLKDVCSALLASDVNVRLVQKLRQDVKDEVSSLLNDKG 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-----PHVILVVGVNGVGKTTVIG 129
            A+  +  +  + V  ++   L+ L  P +    HR      HVI+ VG+ G GKTT   
Sbjct: 69  KAESYTDAQRKHQVQRIVFDYLVKLVDPGDGSTKHRLDKGQQHVIMFVGLQGSGKTTSCT 128

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+      G +  L   DTFR+ A DQLK  A +    F  S   +D  A+A       
Sbjct: 129 KLALWYQKRGYRTGLVCADTFRAGAFDQLKQNAAKARIPFYGSYTETDPVAIASAGVTSF 188

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + DV+I+DT+GR      L A +  + R +K      P   + VLDA+ GQ A  Q 
Sbjct: 189 KKNRFDVIIVDTSGRHKQEKDLFAEMVDISRAVK------PSQTIMVLDASIGQAAEAQC 242

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             F   A    + +TK+DG A+GGG I  V + + P+ F+G GE ++DLEPF A+ F
Sbjct: 243 RAFKEAADFGAMFVTKLDGHAKGGGAISAVASTQTPIIFIGTGEHVHDLEPFRARPF 299


>gi|257052404|ref|YP_003130237.1| signal recognition particle-docking protein FtsY [Halorhabdus
           utahensis DSM 12940]
 gi|256691167|gb|ACV11504.1| signal recognition particle-docking protein FtsY [Halorhabdus
           utahensis DSM 12940]
          Length = 394

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 135/259 (52%), Gaps = 19/259 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH----KMLMPLSKPFNWDFS 108
           L+ SD+ ++VA +I++ +      +    +R L     L+     + L  +     +DF 
Sbjct: 132 LLSSDVEMSVAGEILDGVEANLVGE---TRRRLQSTGNLVQDSLREALYDVISVGQFDFE 188

Query: 109 HR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            R      P VI+  GVNGVGKTT I KL++ + D G   +LA GDT+R+ A  QL   A
Sbjct: 189 ERIAAAEKPVVIVFTGVNGVGKTTTIAKLAQYLEDRGHSSVLANGDTYRAGANQQLGEHA 248

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           +     ++  E G D  A+ Y+A + A+A  VDV++ DTAGRLH +  LM  + K+ R++
Sbjct: 249 EALDVPYISHEQGGDPTAVIYDAVEYAEANDVDVVLGDTAGRLHTSEGLMDQLSKIERII 308

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           +      P   L V +A  GQ+A+ +   F A A   G I+TK D   +GG  I I    
Sbjct: 309 E------PDMTLFVDEAVAGQDAVTRATEFDAAAEIDGTILTKADADPQGGAAISIAHVT 362

Query: 283 KIPVYFLGVGEGINDLEPF 301
             P+ FLG G+G + LE F
Sbjct: 363 GKPILFLGTGQGYDHLERF 381


>gi|301168764|emb|CBW28355.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Haemophilus influenzae 10810]
          Length = 462

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V  + + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVCEFIAKVKASALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EDVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDIEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|119719346|ref|YP_919841.1| signal recognition particle-docking protein FtsY [Thermofilum
           pendens Hrk 5]
 gi|119524466|gb|ABL77838.1| signal recognition particle-docking protein FtsY [Thermofilum
           pendens Hrk 5]
          Length = 302

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/193 (38%), Positives = 111/193 (57%), Gaps = 6/193 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL +G NG GKTT + KL+ +    G +V +AA DTFR+ +I+Q+  WA R  A+ V   
Sbjct: 110 ILFLGPNGHGKTTTVAKLAYRFRKQGYRVAIAAADTFRAGSIEQVSQWASRAGAEVVSLG 169

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +D AA+AYEA K+ +     V++IDTAGR+H    LM  + K+ RV       +P   
Sbjct: 170 YNADPAAVAYEAVKKGEKGDFQVVLIDTAGRMHTKKNLMDEMKKIARV------ASPDFK 223

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + V DA  G +A+ Q + F +  G  G I+TK D   RGG  + +V   K P+ ++G G+
Sbjct: 224 VFVGDALVGNDAVEQAKTFFSEVGFDGSILTKFDADIRGGAALSVVYVTKKPLLYVGTGQ 283

Query: 294 GINDLEPFVAKDF 306
           GI DL+ F  +++
Sbjct: 284 GIEDLKEFNVEEY 296


>gi|254421926|ref|ZP_05035644.1| signal recognition particle protein [Synechococcus sp. PCC 7335]
 gi|196189415|gb|EDX84379.1| signal recognition particle protein [Synechococcus sp. PCC 7335]
          Length = 491

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 158/312 (50%), Gaps = 31/312 (9%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L++ F S   KL+    D IS   + + +RE +   L+ +D  + V +  V ++  K   
Sbjct: 5   LSEQFESAWKKLRG--QDKISDANITEALRE-VRRALLEADANLDVVKGFVADVKEKAQG 61

Query: 77  KDV--------SVQRVLYDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            DV           +++YD  EL+  M    +PL+     D  ++P V+L+ G+ G GKT
Sbjct: 62  ADVVSGVRPDQQFIKIVYD--ELVETMGDTNVPLA-----DSENKPTVVLMAGLQGTGKT 114

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAY 183
           T   KL+  +       +L A D +R AAIDQL     +   D    EIG+DA    +A 
Sbjct: 115 TASAKLALHLRKQERSALLVATDVYRPAAIDQLLTLGKQI--DVPVFEIGADANPVEIAR 172

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  K+A+A  +D +IIDTAGRL  ++ +MA + ++  V +      P  VL V+DA TGQ
Sbjct: 173 QGLKKAKADGIDTVIIDTAGRLQIDTDMMAELAQVKEVAQ------PDEVLLVVDAMTGQ 226

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            A      FH   G TG I+TKMDG +RGG  + +      P+ F+GVGE +  L+PF  
Sbjct: 227 EAATLTRTFHDEIGITGAILTKMDGDSRGGAALSVRRISGQPIKFIGVGEKVEALQPFYP 286

Query: 304 KDFSAVITGCLD 315
              ++ I G  D
Sbjct: 287 DRMASRILGMGD 298


>gi|70607206|ref|YP_256076.1| signal recognition particle [Sulfolobus acidocaldarius DSM 639]
 gi|68567854|gb|AAY80783.1| signal recognition particle [Sulfolobus acidocaldarius DSM 639]
          Length = 208

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 115/192 (59%), Gaps = 6/192 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P VI+  GVNGVGKTT I K+   +    L  ++AA DTFR+AA +QL   A +     
Sbjct: 11  KPFVIIFFGVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTFRAAAQEQLAYHASKLEVQL 70

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +  + G+D A++A++A   A+++ +DV++IDTAGR+H +S L+  + +++R+ K      
Sbjct: 71  IRGKYGADPASVAFDAISFAKSRNIDVVLIDTAGRMHIDSDLVEELKRVLRIAK------ 124

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   + +LD+  G +AL Q   F    G   +I+TK+D  A+GG  + +    K PV ++
Sbjct: 125 PDFRILILDSLAGSDALEQARHFENNVGYDAVILTKVDADAKGGIALSLAYELKKPVVYM 184

Query: 290 GVGEGINDLEPF 301
           GVG+  +DL PF
Sbjct: 185 GVGQNYDDLIPF 196


>gi|303241509|ref|ZP_07328010.1| signal recognition particle protein [Acetivibrio cellulolyticus
           CD2]
 gi|302590927|gb|EFL60674.1| signal recognition particle protein [Acetivibrio cellulolyticus
           CD2]
          Length = 450

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 163/307 (53%), Gaps = 22/307 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+E I  +    R+++  V+E + ++   L+ +D+   V +  + ++  +   
Sbjct: 3   FEGLSNKLQETIKKLKGKGRVNEKDVKEMMREIKLALLEADVNFKVVKDFIAKVSERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPH-VILVVGVNGVGKTTVI 128
           +DV       Q+++    +++H+ L+ L  P      F+ +P  V ++VG+ G GKTT  
Sbjct: 63  QDVLESLTPGQQII----KIVHEELINLMGPGQSKVVFAPKPPTVYMMVGLQGSGKTTTS 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  +   G   +L A D +R AAI QL++   +   D       ++   +A  A + 
Sbjct: 119 GKLANLLRKQGKNPLLVACDVYRPAAIKQLQVVGGQLGVDVFSMGDQTNPVDIAKAAVEH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+ D++IIDTAGRLH +  LM  + K I+     D   PH +L V+D+ TGQ+A+  
Sbjct: 179 AKIKQYDLVIIDTAGRLHIDEKLMDEL-KNIK-----DTVRPHEILLVVDSMTGQDAVNV 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F+   G  G+I+TK+DG  RGG  + +      P+ F+G+GE ++DLEPF     ++
Sbjct: 233 SETFNEKLGVDGVILTKLDGDTRGGAALSVKTVTGKPIKFIGMGEKLSDLEPFFPDRMAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|315230023|ref|YP_004070459.1| signal recognition particle [Thermococcus barophilus MP]
 gi|315183051|gb|ADT83236.1| signal recognition particle [Thermococcus barophilus MP]
          Length = 448

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/274 (33%), Positives = 140/274 (51%), Gaps = 15/274 (5%)

Query: 48  ELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKP 102
           +++  LI SD+ V +     +KI +  L ++    VS  + ++  V E +   L   +KP
Sbjct: 34  DIQRALIMSDVNVKLVLDLTKKIQKRALEEKPPAGVSRREHIIKIVYEELTNFLGKEAKP 93

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
              +   +P ++L VG+ G GKTT + KL++     G KV L   DT+R  A  QLK   
Sbjct: 94  I--EIKEKPTILLTVGIQGSGKTTTVAKLARYFQKRGYKVGLVCSDTWRPGAYHQLKQLV 151

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           +  S +        DA  LA E  +  + K VD++I+D+AGR      L       I  +
Sbjct: 152 EPYSIEVFGDPNEKDAVRLAKEGVEYFKHKGVDIIIVDSAGRHKEEKSL-------IEEM 204

Query: 223 KRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           K++ D   PH V+ V+D T GQ A  Q   F        +I+TK+DG+A+GGG +  VV 
Sbjct: 205 KQISDAINPHEVILVIDGTIGQQAYSQALAFKEATPIGSIIVTKLDGSAKGGGALSAVVA 264

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ F+GVGE I+DLEPF  K F + + G  D
Sbjct: 265 TGAPIKFIGVGERIDDLEPFDPKRFVSRLLGLGD 298


>gi|3746903|gb|AAC64109.1| signal recognition particle 54 kDa subunit precursor [Pisum
           sativum]
          Length = 525

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 159/310 (51%), Gaps = 27/310 (8%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLL-IRSDIGVAVAQKIVEEL---- 70
           +LT G  S   KLK    ++++     + + E + D+   R+D+ + V ++ V+ +    
Sbjct: 41  QLTSGLESAWNKLKR--EEVLTK----ENIVEPMRDIRRARADVSLPVVRRFVQSVTDKA 94

Query: 71  ----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKT 125
               +T+    D  + ++++D  EL+  M   +S+     F++  P VIL+ G+ GVGKT
Sbjct: 95  VGVGVTRGVKPDQQLVKIVHD--ELVQLMGGEVSE---LTFANSGPTVILLAGLQGVGKT 149

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           TV  KL+      G   ML AGD +R AAID L I   +       +      + +A + 
Sbjct: 150 TVCAKLATYFKKQGKSCMLVAGDVYRPAAIDXLTILGKQVDVPVYAAGTDVKPSVIAKQG 209

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           F++A+ KK+DV+I+DTAG L  +  +M  + ++ +VL       P  VL V+DA TGQ A
Sbjct: 210 FEEAKKKKIDVVIVDTAGSLQIDKAMMDELKEVKQVLN------PTEVLLVVDAMTGQEA 263

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
              V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF    
Sbjct: 264 AALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDR 323

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 324 MAGRILGMGD 333


>gi|223995257|ref|XP_002287312.1| signal recognition particle 54 kDA subunit [Thalassiosira
           pseudonana CCMP1335]
 gi|220976428|gb|EED94755.1| signal recognition particle 54 kDA subunit [Thalassiosira
           pseudonana CCMP1335]
          Length = 486

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 144/281 (51%), Gaps = 18/281 (6%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ----RVLYDVSELIHKM----- 95
           VR  L D  +  D+  A+   +    L K   K V+ +    + +YD  EL+  M     
Sbjct: 34  VRRALLDADVNLDVATALIDGVKRRSLGKEVTKGVTAEQQFIKAMYD--ELLDMMGGEAN 91

Query: 96  -LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
               ++   +   ++ P VIL+ G+ G GKTT  GKL+ ++     KV+L A D +R AA
Sbjct: 92  ESNTMATLAHSSVANEPAVILLAGLQGAGKTTAAGKLAFRLPKRNRKVLLVAADVYRPAA 151

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           I+QL+I   +   +     + +D A +A EA ++A+ +  D +++DTAGR   +  LM  
Sbjct: 152 IEQLQILGKQIGVEVFSMGVDADPADIAKEAVEKAKREGFDTVVVDTAGRQVVDEELME- 210

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
             ++ RV K ++   P   L V+DA TGQ A      F A  G +G I+TK+DG +RGG 
Sbjct: 211 --ELRRVKKTVE---PDETLLVVDAMTGQAAASLTASFDAAVGISGAILTKLDGDSRGGA 265

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + I      P+ F+GVGE  NDLEPF     ++ I G  D
Sbjct: 266 AVSIRGVSGKPIKFVGVGEKTNDLEPFYPDRMASRILGMGD 306


>gi|125973288|ref|YP_001037198.1| signal recognition particle subunit FFH/SRP54 (srp54) [Clostridium
           thermocellum ATCC 27405]
 gi|256003768|ref|ZP_05428756.1| signal recognition particle protein [Clostridium thermocellum DSM
           2360]
 gi|281417492|ref|ZP_06248512.1| signal recognition particle protein [Clostridium thermocellum JW20]
 gi|125713513|gb|ABN52005.1| signal recognition particle subunit FFH/SRP54 (srp54) [Clostridium
           thermocellum ATCC 27405]
 gi|255992329|gb|EEU02423.1| signal recognition particle protein [Clostridium thermocellum DSM
           2360]
 gi|281408894|gb|EFB39152.1| signal recognition particle protein [Clostridium thermocellum JW20]
 gi|316940480|gb|ADU74514.1| signal recognition particle protein [Clostridium thermocellum DSM
           1313]
          Length = 446

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 163/308 (52%), Gaps = 24/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+E +  +    R+ +  V+E + ++   L+ +D+      K+V++ + K   
Sbjct: 3   FEGLSGKLQEAMKKLRGKGRVTEKDVKEMMREIKLALLEADVNF----KVVKDFIGKVSE 58

Query: 77  KDVSVQRVLYDVS------ELIHKMLMPLSKPFNWD--FSHRPHVI-LVVGVNGVGKTTV 127
           + V  Q VL  ++      +++H+ L+ L    N    FS +P  I ++VG+ G GKTT 
Sbjct: 59  RAVG-QEVLESLTPGQQVIKIVHEELINLMGSANSKVTFSSKPPTIYMMVGLQGSGKTTT 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+  +   G K +L A D +R AAI QL++   +   +       ++   +A  A +
Sbjct: 118 SGKLANLLRKQGKKPLLVACDVYRPAAIKQLQVVGSQLGIEVFSMGDKTNPVDIAKAAVE 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A++++ D++IIDTAGRLH N  LM  +  +   ++      P  +L V+D+ TGQ+A+ 
Sbjct: 178 YAKSRQYDLVIIDTAGRLHINEELMEELQNIKEAVR------PQEILLVVDSMTGQDAVN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             E F+   G  G+I+TK+DG  RGG  + +      P+ F+G+GE +ND+EPF     +
Sbjct: 232 VAESFNEKLGVDGIILTKLDGDTRGGAALSVKAVTGKPIKFIGMGEKLNDIEPFFPDRMA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|238909520|ref|ZP_04653357.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 453

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 162/306 (52%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V+      Q  +  V SEL+  M    ++  N   +  P V+L+ G+ G GKTT +GK
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFNEALSLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|254495801|ref|ZP_05108713.1| signal recognition particle protein Ffh [Legionella drancourtii
           LLAP12]
 gi|254354958|gb|EET13581.1| signal recognition particle protein Ffh [Legionella drancourtii
           LLAP12]
          Length = 459

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 156/291 (53%), Gaps = 24/291 (8%)

Query: 38  SRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS----- 89
           +R  ++ V+  L ++   LI +D+ + V +  ++ +  K        Q VL D++     
Sbjct: 20  ARLTEENVQSALREVRFSLIEADVALPVIKDFIDRVKQKALG-----QEVLNDLNPDQAF 74

Query: 90  -ELIHKMLMPL--SKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVML 144
            +++H  L+ +   +    DF +  P V L+ G+ G GKTT   KL++ + +    KVM+
Sbjct: 75  VKIVHDELILVMGGERAELDFKTQPPAVFLMAGLQGSGKTTSTAKLARYLKETENKKVMV 134

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           A+ D +R AAI QLK+ A++    F  +E      A+A +A   A+ + +DVLI+DTAGR
Sbjct: 135 ASVDVYRPAAIQQLKVLAEQIGVTFFPAEAHEQPLAIAQKALDSAKKQYMDVLILDTAGR 194

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LH ++ +MA I  + + +K      P   L V+D+ TGQ+A    + FH     TG+I+T
Sbjct: 195 LHVDAEMMAEIKALHQAIK------PIETLFVVDSMTGQDAANTAKAFHEALPLTGVILT 248

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           K DG ARGG  + +      P+ F+G GE ++ LEPF  +  ++ I G  D
Sbjct: 249 KTDGDARGGAALSVKQITGQPIKFIGSGEKVDALEPFHPERIASRILGMGD 299


>gi|242398400|ref|YP_002993824.1| Signal recognition particle GTPase [Thermococcus sibiricus MM 739]
 gi|242264793|gb|ACS89475.1| Signal recognition particle GTPase [Thermococcus sibiricus MM 739]
          Length = 300

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 115/196 (58%), Gaps = 10/196 (5%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
             +P VI+ VG NG GKTT I KL+  +   GL V++AA DTFR+ AI+Q++  A R   
Sbjct: 101 EEKPFVIVFVGFNGGGKTTTIAKLANWLKKNGLSVVIAASDTFRAGAIEQVEEHAKRVGV 160

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +     SD AA+AY++ + A+A+ +DV+++DTAGR   N  LM  + K+ RV K    
Sbjct: 161 KVIKHGYKSDPAAVAYDSIEHAKARGIDVVLVDTAGRNELNRNLMDEMKKIARVTK---- 216

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI--P 285
             P  V+ V D+  G   L Q   F+      G+I+TK+D  ARGG    + V+H I  P
Sbjct: 217 --PDLVIFVGDSLAGNAILEQARQFNEAVKIDGVILTKLDADARGG--TALSVSHAIGAP 272

Query: 286 VYFLGVGEGINDLEPF 301
           + F+G+G+G +DL PF
Sbjct: 273 ILFVGIGQGYDDLIPF 288


>gi|284047845|ref|YP_003398184.1| signal recognition particle protein [Acidaminococcus fermentans DSM
           20731]
 gi|283952066|gb|ADB46869.1| signal recognition particle protein [Acidaminococcus fermentans DSM
           20731]
          Length = 448

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 120/210 (57%), Gaps = 10/210 (4%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P VI++VG+ G GKTT +GKL+  +   G K ++ AGD +R AAI QL++   +   
Sbjct: 98  ANPPTVIMLVGLQGAGKTTTVGKLANYLRKNGKKPLMVAGDVYRPAAITQLEVIGKQL-- 155

Query: 168 DFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           D     +G   +   +A E+ K+A A   D ++IDTAGRLH +  LM  +  M   +   
Sbjct: 156 DMPVFSMGDQVSPVEIARESLKRANALLCDTVLIDTAGRLHVDETLMNELKDMKTAVN-- 213

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  +L V+DA TGQ+A+   + F+   G TGLI+TK+DG ARGG ++ +      P
Sbjct: 214 ----PDEILLVVDAMTGQDAVTVADSFNKALGITGLIVTKLDGDARGGAVLSVKAVTNCP 269

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           V F+G+GE ++ L+PF     ++ I G  D
Sbjct: 270 VKFVGMGEKLDALQPFYPDRMASRILGMGD 299


>gi|330836478|ref|YP_004411119.1| signal recognition particle subunit FFH/SRP54 (srp54) [Spirochaeta
           coccoides DSM 17374]
 gi|329748381|gb|AEC01737.1| signal recognition particle subunit FFH/SRP54 (srp54) [Spirochaeta
           coccoides DSM 17374]
          Length = 444

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 148/292 (50%), Gaps = 25/292 (8%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           IS + + D V EE++  L+ +D+ + V ++ V   L +   + V           +++YD
Sbjct: 22  ISEKNVRDAV-EEIKLALLDADVNLRVVRRFVNGTLDEALGEKVLSAVDPGQQFVKIVYD 80

Query: 88  VSELIHKMLMPLSKPFNWDFSHR-PHV---ILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
                 +M+  L  P     S R P V   IL++G+ G GKTT   KL+ ++   G + +
Sbjct: 81  ------RMVALLGDPEGQKLSLRGPDVVTVILMMGLQGSGKTTTSAKLALRLKKEGRRPL 134

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           LAA D  R AAIDQL++   +           SD   +A +A  +A+ ++ DVLIIDTAG
Sbjct: 135 LAAADLVRPAAIDQLQVLGSKVDVPVHVLPGASDPVKVAVDALARAKREQRDVLIIDTAG 194

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R+H +  LM  I K+   +K      P   L V DA TGQNA+   E F    G +G+I+
Sbjct: 195 RMHLDDTLMTEIKKVRDAVK------PDETLFVADAMTGQNAVSIAEEFEKRIGISGVIL 248

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +K D  ARGG  + +      P+ F+GVGE   D EPF  +  ++ I G  D
Sbjct: 249 SKFDSDARGGAALSLRSVVGKPIKFIGVGEKPEDFEPFYPERMASRILGMGD 300


>gi|255318633|ref|ZP_05359864.1| signal recognition particle protein [Acinetobacter radioresistens
           SK82]
 gi|262379142|ref|ZP_06072298.1| signal recognition particle protein [Acinetobacter radioresistens
           SH164]
 gi|255304315|gb|EET83501.1| signal recognition particle protein [Acinetobacter radioresistens
           SK82]
 gi|262298599|gb|EEY86512.1| signal recognition particle protein [Acinetobacter radioresistens
           SH164]
          Length = 471

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 166/309 (53%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEQALG 61

Query: 77  KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127
           ++V  Q        +++YD    + KM+   ++  + D + +P VI L+ G+ G GKTT 
Sbjct: 62  QEVMSQLSPGQAFVKIVYDE---LTKMMGEANE--SLDLAAKPPVIVLLAGLQGAGKTTT 116

Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL++ + +    KV + + D +R AAI QL+  A+   A+F+ S    D   +A  A 
Sbjct: 117 AAKLARFLKERQKKKVAMVSADIYRPAAIKQLQTVANEVGAEFIESSADEDPIVIANRAI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+ K  DVLI+DTAGRLH +  +M  I  +   ++      P   L V+DA TGQ+A 
Sbjct: 177 EQAKIKFADVLIVDTAGRLHIDDDMMGEIKALHAAIQ------PTETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF  +  
Sbjct: 231 NTAKAFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPERV 290

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 291 AQRILGMGD 299


>gi|212223269|ref|YP_002306505.1| signal recognition particle protein Srp54 [Thermococcus onnurineus
           NA1]
 gi|229558607|sp|B6YSS1|SRP54_THEON RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|212008226|gb|ACJ15608.1| signal recognition particle, SRP54 subunit [Thermococcus onnurineus
           NA1]
          Length = 448

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 154/323 (47%), Gaps = 33/323 (10%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M+ +K+     + +RKL +        +KE + DI              +  LI++D+ V
Sbjct: 1   MALEKLGKALNNALRKLARSSTVDEATIKEVVRDI--------------QRALIQADVNV 46

Query: 61  A--------VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
                    + ++ +EE      +K   + +++Y   E + K L   +KP   +   +P 
Sbjct: 47  RLVLDLTKRIEKRALEEEPPTGVSKKEHIIKIVY---EELTKFLGTEAKPI--EIKEKPT 101

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V+L VG+ G GKTT I KL++     G KV L   DT+R  A  QLK   +    +    
Sbjct: 102 VLLTVGIQGSGKTTSIAKLARYFQKRGYKVGLVCSDTWRPGAYQQLKQLVEPFGIEVFGD 161

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               DA  LA E  +  + K VD++I+D+AGR      L+  + ++   +K      PH 
Sbjct: 162 PEEKDAIKLAKEGVEHFREKGVDIIIVDSAGRHKEEKSLIEEMKQISAAIK------PHE 215

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V+ V+D T GQ A  Q   F        +I+TK+DG+A+GGG +  V     P+ F+GVG
Sbjct: 216 VILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVG 275

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E I+DLEPF  K F + + G  D
Sbjct: 276 ERIDDLEPFDPKRFVSRLLGLGD 298


>gi|288559662|ref|YP_003423148.1| signal recognition particle receptor FtsY [Methanobrevibacter
           ruminantium M1]
 gi|288542372|gb|ADC46256.1| signal recognition particle receptor FtsY [Methanobrevibacter
           ruminantium M1]
          Length = 576

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/192 (38%), Positives = 115/192 (59%), Gaps = 6/192 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            P V+++VG+NG GKTT IGKL+      G   ++AA DTFR+ AI+Q+   AD+     
Sbjct: 380 EPLVVMLVGINGTGKTTTIGKLANFYIKKGYTPVIAASDTFRAGAIEQVAYHADKLGVKL 439

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +  E GSD AA+A++A + A+AK  ++++IDTAGR+  N+ LM  + K+ RV K      
Sbjct: 440 IKHEKGSDPAAVAFDAVQHAKAKGKELVLIDTAGRMQTNTNLMDEMKKIRRVSK------ 493

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  V+ V DA TG +A  Q   F+      G+I+TK D  ++GG  + +    + P+ FL
Sbjct: 494 PDLVVFVGDALTGNDATEQARKFNEAIDIDGVILTKADADSKGGAALSVGYIIQKPILFL 553

Query: 290 GVGEGINDLEPF 301
           G+G+  +D++ +
Sbjct: 554 GMGQSYDDIKEY 565


>gi|126696809|ref|YP_001091695.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543852|gb|ABO18094.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9301]
          Length = 492

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 152/286 (53%), Gaps = 14/286 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           IS   ++D ++E ++  L+ +D+ ++V ++ + ++  K   ++V       Q+ +  V++
Sbjct: 22  ISENNINDALKE-VKRALLDADVSLSVVKEFITDVKDKAIGEEVVRGVNPGQKFIEVVNK 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + K++   + P N +  + P VIL+ G+ G GKTT  GKL   + +   KV+L A D +
Sbjct: 81  ELIKIMGNENSPLNEN-ENSPTVILMAGLQGAGKTTATGKLGLYLKEKDKKVLLVAADIY 139

Query: 151 RSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           R AA++QLK    +   + F   E  S    +A EA   A     + +IIDTAGRL  + 
Sbjct: 140 RPAAVEQLKTLGSQYELEVFSAKEKNSKPEEIAKEALNFANENDFNSIIIDTAGRLQIDD 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +M+   +M+R+    +   P  VL V+D+  GQ A    + FH   G TG I+TK+DG 
Sbjct: 200 SMMS---EMVRIK---EVSNPDEVLLVVDSMIGQEAADLTKSFHEKVGITGAILTKLDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + I      P+ F+GVGE I  L+PF  +  ++ I G  D
Sbjct: 254 SRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRILGMGD 299


>gi|149173194|ref|ZP_01851825.1| signal recognition particle protein [Planctomyces maris DSM 8797]
 gi|148848000|gb|EDL62332.1| signal recognition particle protein [Planctomyces maris DSM 8797]
          Length = 492

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 163/319 (51%), Gaps = 30/319 (9%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           SN K A   L+   KLT+G       +++G+ +          VR+ L +  +  +I  +
Sbjct: 7   SNLKTALSGLARGGKLTEG------NIRDGLRE----------VRQALLEADVNYEIATS 50

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVG 118
             +++ E+ + ++  K V   R    +  ++H+ L+ L  P    F++RP    VI++ G
Sbjct: 51  FIERVTEQSVGEKVLKSV---RPDEQIVGIVHQELINLMGPVEPGFAYRPSGITVIMMCG 107

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSD 177
           + G GKTT  GKL++ + + G K ML A D  R AAI+QLK+ A +        +  G++
Sbjct: 108 LQGSGKTTTCGKLARLLKEQGRKPMLVAADLQRPAAIEQLKVIAGQVDVPVHAEAPDGNN 167

Query: 178 AAALAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           A  +      QA+    VD +I+DTAGRLH ++ LM  + ++ R L+      P  V+  
Sbjct: 168 AVKVCQNGLNQAKKLGNVDTVILDTAGRLHVDADLMKELEQIERKLQ------PDQVIFA 221

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
            DA TGQ+A+   + F+      G+I+TK+DG  RGG  + +     +P+ F+GVGE ++
Sbjct: 222 CDAMTGQDAVNSAKAFNDALELDGVILTKLDGDTRGGAALSVKEVTGVPIKFIGVGEALD 281

Query: 297 DLEPFVAKDFSAVITGCLD 315
            LE F     +  I G  D
Sbjct: 282 RLEQFHPDRMAGRILGMGD 300


>gi|159041443|ref|YP_001540695.1| signal recognition particle-docking protein FtsY [Caldivirga
           maquilingensis IC-167]
 gi|157920278|gb|ABW01705.1| signal recognition particle-docking protein FtsY [Caldivirga
           maquilingensis IC-167]
          Length = 302

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 161/307 (52%), Gaps = 26/307 (8%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEE 69
             +L   F+S    L + I D ++ R L +D V +   E E+ LI  D+ +  A+ ++ E
Sbjct: 2   FNRLKSAFSS----LVKAIGDAVTQRELTEDDVNKLLGEFEERLIEYDVALDTAEALISE 57

Query: 70  LLTKRYAKDVSVQRVLYD--VSELIHKMLMPL-SKPFNWDFSH-------RPHVILVVGV 119
           L  K     V V R   +  V  L+   LM L S   + DF         RP V+L +G 
Sbjct: 58  LKAKLIG--VKVPRFSDNDYVKALVRDTLMNLLSSIPDVDFDEFIKGVKKRPIVLLFLGP 115

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT I KL+  +   G+ V+ AA DT+R+ A++QL+  A +     +    GSD A
Sbjct: 116 NGYGKTTTIAKLTNMLLKRGMSVVWAAADTYRAGAVEQLEGHAAKLGVRVIKHPYGSDPA 175

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++AY+A + A+A+ + V++IDTAGR+H +  LM  + K+ RV       +P + + ++DA
Sbjct: 176 SVAYDAIEHAKARGISVVMIDTAGRMHTDRNLMEELRKVHRV------SSPDASIFIVDA 229

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             G +A+     +        +++TK+D   +GG ++ ++   K P+ FLG G+G +DL 
Sbjct: 230 LMGNDAVDVARTYSKYIPIDFVVVTKVDAYVKGGVILTLLYELKKPIIFLGTGQGYDDLI 289

Query: 300 PFVAKDF 306
            F   DF
Sbjct: 290 KFNKLDF 296


>gi|134045929|ref|YP_001097415.1| signal recognition particle-docking protein FtsY [Methanococcus
           maripaludis C5]
 gi|132663554|gb|ABO35200.1| signal recognition particle-docking protein FtsY [Methanococcus
           maripaludis C5]
          Length = 383

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 113/195 (57%), Gaps = 6/195 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            P V+L VG+NG GKTT I KL+  + + G   ++AAGDTFR+ AI+QL+     T    
Sbjct: 175 EPAVLLFVGINGTGKTTSISKLAYILKERGYSAVMAAGDTFRAGAIEQLEEHGKNTDIKV 234

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +  + G+D+AA+ Y+A   A+AK ++V++ DTAGR   N  LM  I K++RV K      
Sbjct: 235 IKHQKGADSAAVIYDAINHAKAKGLNVVLADTAGRQTTNINLMDEIKKVVRVTK------ 288

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ V D+  G +A+ Q E F+      G I+TK D  A+GG  + I      P+ F+
Sbjct: 289 PDLIIFVGDSLAGNDAISQAEEFNNAINIDGAILTKTDADAKGGAALSIAYAIGKPILFM 348

Query: 290 GVGEGINDLEPFVAK 304
           G+G+  +DL+ F  K
Sbjct: 349 GIGQRYSDLQEFDVK 363


>gi|302344587|ref|YP_003809116.1| signal recognition particle protein [Desulfarculus baarsii DSM
           2075]
 gi|301641200|gb|ADK86522.1| signal recognition particle protein [Desulfarculus baarsii DSM
           2075]
          Length = 445

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 147/285 (51%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           +S   + D +RE +   L+ +D+   VA+  V  +  +   ++V       Q+V+  V E
Sbjct: 22  LSEANIADALRE-VRLALLEADVNYKVAKDFVAGVRERAVGQEVMKSLTPAQQVIKIVRE 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  ++   ++  N      P V+++VG+ G GKTT  GKL++ ++  G K +L   D  
Sbjct: 81  ELSSLMGGQAEGLNL-IGRPPQVLMMVGLQGAGKTTTAGKLARMLAGMGKKPLLVPADVQ 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI+QLK    +       S+ G D   +   A   A     D LI+DTAGRLH +  
Sbjct: 140 RPAAIEQLKKLGAQLGVPVHDSDPGGDPVDICVRALGTASRLGCDALILDTAGRLHIDEP 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LMA   ++ R+ ++L    P  +L V DA TGQ+A+   E FH   G +G+++TK++G A
Sbjct: 200 LMA---QLERIKQKLQ---PGEILLVADAMTGQDAVNVAEAFHQRLGLSGVVLTKVEGDA 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I     +P+  +GVGE ++ LEPF     +  I G  D
Sbjct: 254 RGGAALSIRAVTGVPIKLVGVGEKLDALEPFHPDRMAGRILGMGD 298


>gi|289423976|ref|ZP_06425768.1| signal recognition particle protein [Peptostreptococcus anaerobius
           653-L]
 gi|289155612|gb|EFD04285.1| signal recognition particle protein [Peptostreptococcus anaerobius
           653-L]
          Length = 452

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 145/273 (53%), Gaps = 12/273 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102
           E++  L+ +D+   V +  ++ +  +   +DV       Q V+  V+E +  ++  +   
Sbjct: 34  EVKMALLEADVNFKVVKDFIKVVQERCIGEDVMKSLTPGQMVVKIVNEELTALMGDVQSK 93

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            ++  S  P VI++VG+ G GKTT  GKL+  +   G   +L AGD +R AAI QL++  
Sbjct: 94  ISFS-SKSPTVIMMVGLQGAGKTTTSGKLAGYLKGQGKNPLLVAGDVYRPAAIKQLQVVG 152

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           ++   +            +A  A + A   K D++IIDTAGRLH + +LM  + K I+ +
Sbjct: 153 EKLDIEVFTLGDKVSPVDIAKAALEHANKNKNDLVIIDTAGRLHVDEVLMQEL-KDIKSV 211

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            R     P  +L V+DA TGQ+A+   E F    G  G+++TKMDG  RGG  + I    
Sbjct: 212 AR-----PQEILLVVDAMTGQDAVNVAESFDTALGIDGVVLTKMDGDTRGGAALSIRAVT 266

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           K P+ F+G+GE ++++EPF     ++ I G  D
Sbjct: 267 KKPIKFVGMGEKLDNIEPFYPDRMASRILGMGD 299


>gi|261247869|emb|CBG25698.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
          Length = 453

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 162/306 (52%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V+      Q  +  V SEL+  M    ++  N   +  P V+L+ G+ G GKTT +GK
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|56414642|ref|YP_151717.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363569|ref|YP_002143206.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128899|gb|AAV78405.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095046|emb|CAR60592.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 453

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 162/306 (52%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKKKAVG 61

Query: 77  KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V+      Q  +  V SEL+  M    ++  N   +  P V+L+ G+ G GKTT +GK
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|186683137|ref|YP_001866333.1| signal recognition particle protein [Nostoc punctiforme PCC 73102]
 gi|186465589|gb|ACC81390.1| signal recognition particle protein [Nostoc punctiforme PCC 73102]
          Length = 488

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 149/288 (51%), Gaps = 15/288 (5%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELI 92
           D IS   + D +RE +   L+ +D+ + V +  + E+  K + A+ V+  R      +++
Sbjct: 20  DKISQSNIQDALRE-VRRALLEADVNLQVVKDFISEVEAKAQGAEVVTGVRPDQQFIKIV 78

Query: 93  HKMLMPLSKPFN---WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           H  L+ +    N    +   +P ++L+ G+ G GKTT   KL+  +       +L A D 
Sbjct: 79  HDELVEVMGEENVPIAEAQEKPTIVLMAGLQGTGKTTATAKLALHLRKLDRSCLLVATDV 138

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           +R AAIDQL     +   D    E+GSDA    +A +  ++A+A+ V+ +IIDTAGRL  
Sbjct: 139 YRPAAIDQLLTLGKQI--DVPVFELGSDADPVEIARQGVERARAEGVNTVIIDTAGRLQI 196

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  +MA + ++   ++      PH  L V+DA TGQ A      FH   G TG I+TKMD
Sbjct: 197 DEDMMAELARIKATVQ------PHETLLVVDAMTGQEAANLTRTFHEQIGITGAILTKMD 250

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +RGG  + +      P+ F+GVGE +  L+PF     ++ I G  D
Sbjct: 251 GDSRGGAALSVRKISGAPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298


>gi|205353714|ref|YP_002227515.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273495|emb|CAR38472.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326628820|gb|EGE35163.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 453

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 162/306 (52%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V+      Q  +  V SEL+  M    ++  N   +  P V+L+ G+ G GKTT +GK
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|16761530|ref|NP_457147.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765992|ref|NP_461607.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143001|ref|NP_806343.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62181248|ref|YP_217665.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161615610|ref|YP_001589575.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553522|ref|ZP_02347271.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167992457|ref|ZP_02573555.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234200|ref|ZP_02659258.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168239447|ref|ZP_02664505.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244700|ref|ZP_02669632.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262150|ref|ZP_02684123.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168464150|ref|ZP_02698067.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823045|ref|ZP_02835045.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443897|ref|YP_002041940.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194447619|ref|YP_002046682.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470549|ref|ZP_03076533.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736625|ref|YP_002115688.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197247718|ref|YP_002147614.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263594|ref|ZP_03163668.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198243111|ref|YP_002216687.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200388229|ref|ZP_03214841.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929456|ref|ZP_03220530.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207858025|ref|YP_002244676.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213161442|ref|ZP_03347152.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213424862|ref|ZP_03357612.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213622617|ref|ZP_03375400.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213647495|ref|ZP_03377548.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289824175|ref|ZP_06543770.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25294415|pir||AI0833 signal recognition particle protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421223|gb|AAL21566.1| 4.5S-RNP protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16503831|emb|CAD05856.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138634|gb|AAO70203.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62128881|gb|AAX66584.1| 45S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161364974|gb|ABX68742.1| hypothetical protein SPAB_03391 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402560|gb|ACF62782.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194405923|gb|ACF66142.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456913|gb|EDX45752.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712127|gb|ACF91348.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633364|gb|EDX51778.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197211421|gb|ACH48818.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241849|gb|EDY24469.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197287864|gb|EDY27252.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937627|gb|ACH74960.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605327|gb|EDZ03872.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321175|gb|EDZ06375.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205322062|gb|EDZ09901.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329303|gb|EDZ16067.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331826|gb|EDZ18590.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336482|gb|EDZ23246.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340654|gb|EDZ27418.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349192|gb|EDZ35823.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709828|emb|CAR34180.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|267994820|gb|ACY89705.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159237|emb|CBW18752.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913700|dbj|BAJ37674.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087155|emb|CBY96922.1| Signal recognition 54 kDa protein SRP54 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223469|gb|EFX48534.1| Signal recognition particle, subunit Ffh SRP54 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614475|gb|EFY11406.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621460|gb|EFY18313.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624321|gb|EFY21154.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629380|gb|EFY26158.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633620|gb|EFY30362.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638337|gb|EFY35035.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639775|gb|EFY36458.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647363|gb|EFY43859.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650467|gb|EFY46877.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656040|gb|EFY52340.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661434|gb|EFY57659.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662634|gb|EFY58842.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667007|gb|EFY63182.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671376|gb|EFY67499.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677617|gb|EFY73680.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681557|gb|EFY77587.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683957|gb|EFY79967.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715734|gb|EFZ07305.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323131021|gb|ADX18451.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323195526|gb|EFZ80704.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197899|gb|EFZ83022.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203077|gb|EFZ88109.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205318|gb|EFZ90293.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210532|gb|EFZ95416.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323218187|gb|EGA02899.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221547|gb|EGA05960.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223767|gb|EGA08072.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230950|gb|EGA15068.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234698|gb|EGA18784.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238737|gb|EGA22787.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241437|gb|EGA25468.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246866|gb|EGA30833.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253265|gb|EGA37095.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257061|gb|EGA40770.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260466|gb|EGA44077.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264477|gb|EGA47983.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269612|gb|EGA53065.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624443|gb|EGE30788.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332989601|gb|AEF08584.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 453

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 162/306 (52%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V+      Q  +  V SEL+  M    ++  N   +  P V+L+ G+ G GKTT +GK
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|18314019|ref|NP_560686.1| signal recognition particle [Pyrobaculum aerophilum str. IM2]
 gi|28380154|sp|Q8ZT95|SRP54_PYRAE RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|18161596|gb|AAL64868.1| signal recognition particle (srp54 family), putative [Pyrobaculum
           aerophilum str. IM2]
          Length = 433

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 125/232 (53%), Gaps = 12/232 (5%)

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           VLY+  EL+   L+   +P  +  + +P+++L++GV G GKTT   KL+K ++  G KV 
Sbjct: 76  VLYE--ELVK--LLGGEQPAEFKPTKKPYIVLLLGVEGSGKTTTAAKLAKYLAKRGYKVG 131

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L   DT R AA DQL+  A++    F     G DA  +A    +    K +DV+I+DTAG
Sbjct: 132 LVETDTIRPAAFDQLRQLAEKIGVPFYGERDGKDAVEIAKRGVQNF--KNMDVIIVDTAG 189

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R  N   L+    K +R +   D  +P  V+ V+DAT G+ A  Q E F        +I+
Sbjct: 190 RHRNEEALL----KEVRAI--YDAVSPDEVVLVIDATVGKMAAAQAEAFMKYLPIHSVII 243

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TKMD TARGGG +  V      V F+GVGE +++ E F  + F A + G  D
Sbjct: 244 TKMDSTARGGGALAAVAKTGAKVKFIGVGEDVDEFEQFSPRKFVARVLGMGD 295


>gi|18978103|ref|NP_579460.1| signal recognition particle protein Srp54 [Pyrococcus furiosus DSM
           3638]
 gi|23822176|sp|Q8U070|SRP54_PYRFU RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|211939182|pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
           The Ribonucleic Core Of The Signal Recognition Particle
           From The Archaeon Pyrococcus Furiosus.
 gi|211939183|pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
           The Ribonucleic Core Of The Signal Recognition Particle
           From The Archaeon Pyrococcus Furiosus.
 gi|18893898|gb|AAL81855.1| signal recognition particle protein srp54 [Pyrococcus furiosus DSM
           3638]
          Length = 443

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 142/273 (52%), Gaps = 13/273 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKP 102
           +++  LI++D+ V +  ++  E+    L ++    +S  + ++  V E + K L   +KP
Sbjct: 34  DIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP 93

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
              +   +P ++L+VG+ G GKTT + KL++     G KV +   DT+R  A  QL+   
Sbjct: 94  I--EIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLL 151

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           DR   +   +    DA  LA E     ++K VD++I+DTAGR   +  L+  + ++  V+
Sbjct: 152 DRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVI 211

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                  PH V+ V+D T GQ A  Q   F        +I+TK+DG+A+GGG +  V   
Sbjct: 212 H------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAAT 265

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+G GE I+D+EPF    F + + G  D
Sbjct: 266 GAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGD 298


>gi|298710297|emb|CBJ31918.1| PFtsY, plastid signal recognition particle receptor [Ectocarpus
           siliculosus]
          Length = 522

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 128/213 (60%), Gaps = 9/213 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+  +G NG+GKTT +GK++ ++  D G KV+LAA DTFR+AA++QL  WA+R+ AD 
Sbjct: 249 PSVLFFMGANGMGKTTTVGKVASRLREDGGQKVLLAAADTFRAAAVEQLNEWAERSGADI 308

Query: 170 VCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           V   +      ++   A ++A ++  DVLI+DT+GRL NN  L   +  M + L    P 
Sbjct: 309 VVPLDKDERPPSVVARAAEKAVSEGYDVLIVDTSGRLSNNYSLNEELKDMKKALSDRIPG 368

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH  L V+DA+ G+NA+ Q   +    G + L++TK+DGTARGG ++ IV    +PV  
Sbjct: 369 APHDTLLVVDASVGRNAVDQARTWKQEVGISALVVTKLDGTARGGFVVSIVSDLGVPVKL 428

Query: 289 LGVGEGINDLEPFVAKDFSAV--ITGCLDYGEE 319
           +GVGE + DL     +DF  V  +   L Y  E
Sbjct: 429 IGVGESLYDL-----RDFEPVLFVDSLLGYSPE 456


>gi|213416644|ref|ZP_03349788.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 341

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/206 (38%), Positives = 124/206 (60%), Gaps = 2/206 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 123 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 182

Query: 73  KRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY +  + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 183 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKL 241

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 242 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 301

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGK 217
           + VDVLI DTAGRL N S LM  + K
Sbjct: 302 RNVDVLIADTAGRLQNKSHLMEELKK 327


>gi|302558152|ref|ZP_07310494.1| signal recognition particle FtsY [Streptomyces griseoflavus Tu4000]
 gi|302475770|gb|EFL38863.1| signal recognition particle FtsY [Streptomyces griseoflavus Tu4000]
          Length = 407

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 172/303 (56%), Gaps = 11/303 (3%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q++V+ L   R 
Sbjct: 109 RLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVDRL---RE 165

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV------ILVVGVNGVGKTTVIG 129
              V   R   ++  L+ + L+ L  P      H  +       ++VVGVNG GKTT  G
Sbjct: 166 RVKVLGTRTPAELRVLLREELITLVGPEMDRTVHTENAAGGPGVVMVVGVNGTGKTTTTG 225

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V      D A++A++A K+ 
Sbjct: 226 KLARVLVADGNTVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEAGDPASVAFDAVKEG 285

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATTGQN L Q 
Sbjct: 286 KEMAADAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAPL--DEVLLVLDATTGQNGLVQA 343

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF  + F   
Sbjct: 344 RVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVDA 403

Query: 310 ITG 312
           + G
Sbjct: 404 LIG 406


>gi|37522208|ref|NP_925585.1| signal recognition particle protein SRP54 [Gloeobacter violaceus
           PCC 7421]
 gi|35213208|dbj|BAC90580.1| signal recognition particle protein SRP54 [Gloeobacter violaceus
           PCC 7421]
          Length = 497

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 148/289 (51%), Gaps = 15/289 (5%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--EL 91
           D I+   +D+ +RE +   L+ +D+   VA++ V ++       +V V  V  D    ++
Sbjct: 20  DRITEGNIDEALRE-VRRALLEADVNFQVAKEFVADVRDDALGAEV-VSGVTPDQQFIKI 77

Query: 92  IHKMLMPLSKPFNWDFSH-----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           +H  L+ L    N   +      RP V+L+ G+ G GKTT   KL+  +   G K +LAA
Sbjct: 78  VHDQLVALMGEQNVPLAEPRAKGRPAVVLMAGLQGTGKTTASAKLALYLQKNGQKPLLAA 137

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AAIDQL+    +           +D   +A  + ++A A + DVLI+DTAGRL 
Sbjct: 138 ADVYRPAAIDQLQTLGGQIQVPVFTLGKEADPVDIARASLERAIADRHDVLIVDTAGRLS 197

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  +MA   ++ R+   +DP     +L V+DA TGQ A      FH   G TG I+TK+
Sbjct: 198 IDDAMMA---ELERIKAAIDPE---EILLVVDAMTGQEAANLTRAFHDRLGITGAILTKL 251

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + +      P+ F+GVGE +  L+PF  +  ++ I G  D
Sbjct: 252 DGDTRGGAALSVRKISGQPIKFVGVGEKVEALQPFYPERMASRILGMGD 300


>gi|255026959|ref|ZP_05298945.1| SRP receptor alpha-subunit [Listeria monocytogenes FSL J2-003]
          Length = 156

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 95/143 (66%)

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           RT  D +    GSD AA+ ++A + A+A+K DVL+ DTAGRL N   LM  + K+ RV+ 
Sbjct: 1   RTGVDVIKQAEGSDPAAVMFDAVQAAKARKADVLLCDTAGRLQNKVNLMNELEKVKRVIT 60

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           R  P+APH VL VLDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     
Sbjct: 61  REIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELD 120

Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306
           IPV F+G+GE ++DL+ F A ++
Sbjct: 121 IPVKFVGLGEQMDDLQAFDANEY 143


>gi|269101890|ref|ZP_06154587.1| signal recognition particle subunit Ffh SRP54 [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161788|gb|EEZ40284.1| signal recognition particle subunit Ffh SRP54 [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 455

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL DD +++ L ++   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVNRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   S  P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVSKSLTPGQEFIKIVQAELEAVMGEQNEELNL-ASQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +   K V++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKVLKERNKKKVLVVSADVYRPAAIKQLETLATDLGVDFFPSTPDQKPVDIAKAAVAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +S +M  I  + +VL       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDSEMMDEIKDVHQVLN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|161502225|ref|YP_001569337.1| signal recognition particle protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863572|gb|ABX20195.1| hypothetical protein SARI_00249 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 453

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 162/309 (52%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V+      Q  +  V SEL+  M    ++  N   +  P V+L+ G+ G GKTT +GK
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFSSDVGQKPVDIVNAALKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A 
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     
Sbjct: 231 NTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRI 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|296420065|ref|XP_002839601.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635784|emb|CAZ83792.1| unnamed protein product [Tuber melanosporum]
          Length = 546

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 153/301 (50%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   ++D+  S  +D    DG+ +E+   LI +D+ V +   + + +        L   
Sbjct: 9   RITSAVSDLARSNVVDEKVFDGMLKEICSALIEADVNVKLVSNLRKSIKHTVNFKELNPN 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  EL+ K++ P S+PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-KLVDPHSEPFKPK-KGRSNVIMFVGLQGSGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D   ++ E  ++ + ++ 
Sbjct: 125 YQARGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSYTETDPVKVSREGVEKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR      L A   +M+++ + +    P   + VLDA+ GQ A  Q + F  
Sbjct: 185 DIIIVDTSGRHQQEKELFA---EMVQIQQAV---TPDQTIMVLDASIGQAAEAQSKAFKE 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V   + P+ F+G GE + DLE F  + F + + G  
Sbjct: 239 SANFGAIIITKTDGHAAGGGAISAVAATRTPIMFIGTGEHMLDLERFAPQAFVSKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|260886927|ref|ZP_05898190.1| signal recognition particle protein [Selenomonas sputigena ATCC
           35185]
 gi|330839284|ref|YP_004413864.1| signal recognition particle protein [Selenomonas sputigena ATCC
           35185]
 gi|260862989|gb|EEX77489.1| signal recognition particle protein [Selenomonas sputigena ATCC
           35185]
 gi|329747048|gb|AEC00405.1| signal recognition particle protein [Selenomonas sputigena ATCC
           35185]
          Length = 456

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 156/304 (51%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L++    +    +L +D V E + ++   L+ +D+   V +  ++++  +   
Sbjct: 3   FESLADRLQQTFKKLRGHGKLTEDDVNEAMREVRMALLEADVNFKVVKDFIKKVKERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V E + +++       N   S  P VI++ G+ G GKTT  GKL
Sbjct: 63  QDVLDTLTPAQVVIKIVDEELTELMGGTQSRLNIS-SVPPTVIMMAGLQGAGKTTSAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              +   G K +L A D +R AA+ QL++  ++          G+DA  +A  +   A++
Sbjct: 122 GLSLKKQGKKPLLVAADIYRPAAVKQLQVLGEQLGIPVFSMPQGTDAVTIARSSIDHARS 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRLH +  LM  +  +   +K      PH +L V+DA TGQ+A+   E 
Sbjct: 182 HINDVVIIDTAGRLHIDEKLMQELKDIKADVK------PHEILLVVDAMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DG ARGG  + +      P+ F+G+GE +  LEPF     ++ I 
Sbjct: 236 FNEGLGIDGVVLTKLDGDARGGAALSVKAVTGCPIKFVGMGEKLEALEPFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|330980008|gb|EGH78274.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 369

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 113/182 (62%), Gaps = 2/182 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  +L +G + TS  + EG+  + +  + +DD + EE+E  L+ +D+GV     I++ L 
Sbjct: 188 FFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIKSLT 247

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   K ++  + LY  +   +  ML P+ +P      HRP VILVVGVNG GKTT IGK
Sbjct: 248 QKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHRPFVILVVGVNGAGKTTTIGK 307

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A+
Sbjct: 308 LAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQAAK 367

Query: 191 AK 192
           A+
Sbjct: 368 AR 369


>gi|165977179|ref|YP_001652772.1| signal recognition particle GTPase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165877280|gb|ABY70328.1| signal recognition particle GTPase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 463

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  L  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVNKSLTPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++ RVL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+ K+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILAKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|312134783|ref|YP_004002121.1| signal recognition particle protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774834|gb|ADQ04321.1| signal recognition particle protein [Caldicellulosiruptor
           owensensis OL]
          Length = 443

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 22/307 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F+S S KL++    +    +L +  ++E ++++   L+ +D+   V +  +  +  K   
Sbjct: 2   FSSLSEKLQDVFKKLRGKGKLTEKDIKEAMKEVKLALLEADVNYKVVKDFINNVTQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVI 128
           ++V       Q+V+    ++++  ++ L    +   +  P    + ++VG+ G GKTT  
Sbjct: 62  EEVLESLTPAQQVI----KIVYDEMVNLLGGSDAKLTFSPSGFSIYMMVGLQGSGKTTTA 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  +   G   +L A D +R AAI QL++ A +            DA  +A +  + 
Sbjct: 118 GKLAGLLKKQGKNPLLVACDIYRPAAIKQLEVVAQKVGVKCYADYTSQDAVKIAKDGIEF 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A++ + DV+IIDTAGRLH N  LM  +  +   +K      P  +L V+DA TGQ+A+  
Sbjct: 178 AKSNRSDVVIIDTAGRLHINQELMDELKNIKNAVK------PTEILLVVDAMTGQDAVNV 231

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F+A  G  G+IMTK+DG  RGG  + +      P+ F GVGE + DLEPF     ++
Sbjct: 232 AEAFNAQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVGEKMEDLEPFYPDRMAS 291

Query: 309 VITGCLD 315
            I G  D
Sbjct: 292 RILGMGD 298


>gi|254492590|ref|ZP_05105761.1| signal recognition particle protein [Methylophaga thiooxidans
           DMS010]
 gi|224462111|gb|EEF78389.1| signal recognition particle protein [Methylophaga thiooxydans
           DMS010]
          Length = 455

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 148/275 (53%), Gaps = 22/275 (8%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  +D V+E L ++   L+ +D+ + V +  V+ +  +   +DV       Q ++  V++
Sbjct: 21  RITEDNVKETLREVRMALLEADVALPVVKAFVDRVKERAMGQDVLRSLTPGQALVKVVND 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   ++  N +    P VIL+ G+ G GKTT + KLS+ + +   K VM+A+ D 
Sbjct: 81  ELVAVMGEANEGLNLNM-QPPAVILMAGLQGAGKTTSVAKLSRWLKERDRKSVMVASTDV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAIDQL+  AD   A F  S+   +   +A  A +QA+   VDV+IIDTAGRLH + 
Sbjct: 140 YRPAAIDQLQTLADEVDAKFFPSQSDQNPVDIAKAAIEQAKRDYVDVVIIDTAGRLHIDD 199

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +M+ I ++         HA   P   L  +D+ TGQ+A    + F+     TG+I+TK 
Sbjct: 200 DMMSEIKQI---------HAAINPIETLFTVDSMTGQDAANTAKAFNEALPLTGVILTKT 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           DG ARGG  + I      P+ F+GVGE    LEPF
Sbjct: 251 DGDARGGAALSIRHITGKPIKFMGVGEKTEALEPF 285


>gi|121997247|ref|YP_001002034.1| signal recognition particle protein [Halorhodospira halophila SL1]
 gi|121588652|gb|ABM61232.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Halorhodospira halophila SL1]
          Length = 468

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 152/288 (52%), Gaps = 18/288 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-------V 88
           I+   + + VRE +   L+ +D+ + V +   EE+  K+ A+   V + L         V
Sbjct: 22  ITDENIQETVRE-VRKALLEADVALPVVRSFTEEV--KKRAEGAEVAKSLTPGQAFIKIV 78

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAG 147
            + + +++   ++P N +    P V+LV G+ G GKTT IGKL++ + +    KV++ + 
Sbjct: 79  QDELVRVMGAEAEPLNLNVQP-PAVVLVAGLQGSGKTTSIGKLARYLREREKKKVLVVSC 137

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D +R AAIDQL+  A +   DF  S+ G     +A +A   A+    DVL++DTAGRL  
Sbjct: 138 DVYRPAAIDQLETLAGQVEVDFFPSKSGDKPERIAKDAVDHAKRHYYDVLLVDTAGRLTI 197

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  +M  + ++ + +       P   L V+DA TGQ+A +  + F      TG+++TK D
Sbjct: 198 DEAMMDEVKRLHKTV------TPAETLFVVDAMTGQDAAKTAQAFGEALPLTGVVLTKTD 251

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G ARGG  + +      P+ FLG+GE  + LEPF  +  ++ I G  D
Sbjct: 252 GDARGGAALSVRHVTGAPIKFLGIGEKTDALEPFHPERVASRILGKGD 299


>gi|320583360|gb|EFW97575.1| Signal recognition particle protein [Pichia angusta DL-1]
          Length = 530

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 144/281 (51%), Gaps = 18/281 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVA-------QKIVEELLTKRYAKDVSVQRVLYD-VSELIHK 94
           DG+ +E+ + LI +D+ V +        +  +E+       K   +Q+ ++D + +L+  
Sbjct: 29  DGLLKEISNALIEADVNVKLVLNLRKKLKSTIEQEEKPGVNKKKLIQKAVFDELCDLVDC 88

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
               L KP       + +VI+ VG+ G GKTT   KL+      G KV +   DTFR+ A
Sbjct: 89  KETELYKPK----KKKTNVIMFVGLQGAGKTTTCTKLAVYYQRRGFKVGMVCADTFRAGA 144

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            DQLK  A +    +  S   +D   +A +  ++ + +K +++I+DT+GR    S L A 
Sbjct: 145 FDQLKQNATKAKIPYYGSYTEADPVKVASDGVEKFKKEKFEIIIVDTSGRHRQESELFA- 203

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
             +MI++ + + P+     + VLDA+ GQ A  Q   F   +    +I+TKMDG A+GGG
Sbjct: 204 --EMIQIGEAVQPN---QTIMVLDASIGQAAESQSRAFKESSNFGAIILTKMDGHAKGGG 258

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I  V     P+ F+G GE INDLE F  + F + + G  D
Sbjct: 259 AISAVAATHTPIAFIGTGEHINDLESFTPRQFVSKLLGIGD 299


>gi|320167917|gb|EFW44816.1| signal recognition particle containing protein [Capsaspora
           owczarzaki ATCC 30864]
          Length = 512

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 145/285 (50%), Gaps = 22/285 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKI---------VEELLTKRYAKDVSVQRVLYD-VSELI 92
           D + +E+   L+ +D+ V +  K+          +E+      K V +Q+ +YD +  L+
Sbjct: 29  DAMLKEICTALLEADVNVKLVMKLRTSVKAAVNFDEMAAGLNKKRV-IQKAVYDELCRLV 87

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
              + P  KP       +P+VI+ VG+ G GKTT   KL+      G K  L   DTFR+
Sbjct: 88  DPGIAPY-KPVKG----KPNVIMFVGLQGSGKTTTCTKLAYYYHKKGWKTCLVCADTFRA 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A DQLK  A +    F  S   +D   +A E  ++ + +  +++I+DT+GR    + L 
Sbjct: 143 GAFDQLKQNATKARIPFYGSYTEADPVLIAEEGVERFKKEGFEIIIVDTSGRHKQEASLF 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
               +M+++ K +DP    +V+ VLDAT GQ AL Q + F A      +IMTK+DG A+G
Sbjct: 203 E---EMLQISKAVDPQ---NVIFVLDATIGQAALGQAQAFKATVDVGSVIMTKLDGHAKG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           GG +  V   + P+ F+G GE + D E F  K F   + G  D G
Sbjct: 257 GGALSAVAATQSPIIFIGTGEHMEDFERFETKAFIGKLLGMGDIG 301


>gi|50292271|ref|XP_448568.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527880|emb|CAG61531.1| unnamed protein product [Candida glabrata]
          Length = 532

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 143/290 (49%), Gaps = 31/290 (10%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKI--------VEELLTKRYAKDVS----VQRVLYD--- 87
           DG+ + +   L+ +D+ + +  K+        ++   T R   +V     VQ+ ++D   
Sbjct: 30  DGMLKGISTALLEADVNIMLVSKVRNNIRSVLLDNKTTNRSMNNVQTKKLVQKTVFDELC 89

Query: 88  --VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
             V    HK+  P  K  N        +I+ VG+ G GKTT   KL+   S  G KV L 
Sbjct: 90  GLVDCTDHKVFQPKKKATN--------IIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLV 141

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             DTFR+ A DQLK  A +    F  S   +D   +A +   + + +K DV+I+DT+GR 
Sbjct: 142 CADTFRAGAFDQLKQNAVKARIPFYGSYTETDPVKVAGDGIAKFKKEKFDVIIVDTSGRH 201

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H    L   + ++  V+K      P+  + VLDA+ GQ A +Q + F   +    +I+TK
Sbjct: 202 HQEEELFHEMVQISNVIK------PNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTK 255

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           MDG A+GGG I  V     P+ F+G GE I+DLE F  K F + + G  D
Sbjct: 256 MDGHAKGGGAISAVAATNTPIAFIGTGEHIHDLEKFSPKSFISKLLGIGD 305


>gi|229581681|ref|YP_002840080.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus Y.N.15.51]
 gi|228012397|gb|ACP48158.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus Y.N.15.51]
          Length = 208

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 121/199 (60%), Gaps = 6/199 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S +P++I+  G+NGVGKTT I K +  +   GL  +++A DTFR+AA +QL+I A     
Sbjct: 10  STKPYIIIFFGINGVGKTTTIAKFAYILKKNGLSCIISASDTFRAAAQEQLEIHARNLEI 69

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +  + G D A++AY+  + A+++ +DV++IDTAGR+H ++ L+  + +++ + +    
Sbjct: 70  PLIKGKYGGDPASVAYDTIRAAKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNITR---- 125

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+  + VLD+  G +AL Q + F    G   +I+TK+D   +GG ++ +      PV 
Sbjct: 126 --PNLKILVLDSLGGNDALEQAKYFENNVGFDLVILTKVDADVKGGVILSLAYELNKPVG 183

Query: 288 FLGVGEGINDLEPFVAKDF 306
           +LGVG+  +DL PF A+ F
Sbjct: 184 YLGVGQTYDDLIPFNAEWF 202


>gi|218754674|ref|ZP_03533470.1| cell division protein ftsY [Mycobacterium tuberculosis GM 1503]
 gi|289763097|ref|ZP_06522475.1| signal recognition particle FtsY [Mycobacterium tuberculosis GM
           1503]
 gi|289710603|gb|EFD74619.1| signal recognition particle FtsY [Mycobacterium tuberculosis GM
           1503]
          Length = 395

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/232 (40%), Positives = 140/232 (60%), Gaps = 9/232 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMPLSKP 102
           +++ED L+ +D+G A    +V +L ++  + +V  +     VL DV  LI+++   + + 
Sbjct: 156 QDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDV--LINELQPGMDRS 213

Query: 103 FN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                 +  P V+LVVGVNG GKTT +GKL++ +   G +V+L A DTFR+AA DQL+ W
Sbjct: 214 IRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTW 273

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A R  A  V    G+D A++A++A  +  A   DV++IDTAGRLH    LM  + K+ RV
Sbjct: 274 AARVGAAVVRGPEGADPASVAFDAVDKGIAAGADVVLIDTAGRLHTKVGLMDELDKVKRV 333

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
           + R    +   VL VLDAT GQN L Q  +F  V   +G ++TK+DGTA+GG
Sbjct: 334 VTRR--ASVDEVLLVLDATIGQNGLAQARVFAEVVDISGAVLTKLDGTAKGG 383


>gi|329766354|ref|ZP_08257900.1| signal recognition particle-docking protein FtsY [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137123|gb|EGG41413.1| signal recognition particle-docking protein FtsY [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 464

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 114/205 (55%), Gaps = 6/205 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P +IL VG+NG GKTT + K++  +  A   +++AA DTFR+ AI+QL+   +R +   
Sbjct: 104 QPFLILFVGINGTGKTTSLAKVAHMLQQAKYSLVVAAADTFRAGAIEQLREHTNRLNLKL 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     SD AA+A +A   A++ K+D ++IDTAGR+  +  LM  I K+ +V+       
Sbjct: 164 VAQNYNSDPAAVARDAVLYAKSHKMDCVLIDTAGRMQTSKNLMEQIAKITKVVN------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   + V D+  G + + Q   F       G I+TK D  ARGG  + IV     PV +L
Sbjct: 218 PDFKIFVGDSLAGNDTVNQAREFFEHVKFNGSILTKSDADARGGAALSIVKITSTPVLYL 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCL 314
           GVG+  +DL+PF  + F   + G L
Sbjct: 278 GVGQEYSDLKPFDKQTFLETVFGSL 302


>gi|225075354|ref|ZP_03718553.1| hypothetical protein NEIFLAOT_00359 [Neisseria flavescens
           NRL30031/H210]
 gi|224953314|gb|EEG34523.1| hypothetical protein NEIFLAOT_00359 [Neisseria flavescens
           NRL30031/H210]
          Length = 456

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 155/286 (54%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVLI+DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLIVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
                 I+VL     HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 ----NEIKVL-----HAAVNPIETLFVIDAMLGQDAVNTAQAFNEALPLTGIVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTSKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|258544952|ref|ZP_05705186.1| signal recognition particle protein [Cardiobacterium hominis ATCC
           15826]
 gi|258519872|gb|EEV88731.1| signal recognition particle protein [Cardiobacterium hominis ATCC
           15826]
          Length = 453

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 149/287 (51%), Gaps = 15/287 (5%)

Query: 37  SSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDV 88
            +R  ++ + + L D+   LI +D+ + V ++++E +      ++VS+     Q  +  V
Sbjct: 19  QARITEENITQALRDVRMALIEADVALPVVKEVIETIKNAAIGQEVSLKLSPDQAFIKTV 78

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
              + +++   +   N   +  P VIL+ G+ G GKTT   KL++K+ +   KV L + D
Sbjct: 79  KNELVRIMGEENSALNL-ATQPPAVILMAGLQGSGKTTSSAKLARKLINEKKKVALVSAD 137

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +R AAI+QLK  A +  A F+ S+     A +   A+  A+ +  DVLI+DTAGRLH +
Sbjct: 138 VYRPAAIEQLKTLAGQVGATFIPSDASEKPADITARAYDFAKRQYFDVLIVDTAGRLHID 197

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  I  +   LK      P   L V+D  TGQ+A    + F+ V   TG+++TK+DG
Sbjct: 198 DALMDEIRTLHAQLK------PIETLFVVDGMTGQDAANTAKAFNDVLPLTGVVLTKIDG 251

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            ARGG  + I      P+ FLGVGE    LE F     ++ I G  D
Sbjct: 252 DARGGAALSIRHITGKPIKFLGVGEKTEALEAFHPDRIASRILGMGD 298


>gi|223939677|ref|ZP_03631550.1| signal recognition particle protein [bacterium Ellin514]
 gi|223891634|gb|EEF58122.1| signal recognition particle protein [bacterium Ellin514]
          Length = 449

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 155/304 (50%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + S KL+    ++     IS   + D +RE +   L+ +D+   VA+  +E + TK  
Sbjct: 2   FDTISNKLQNAFKNLRGLGKISESNVSDSLRE-VRLALLEADVNFKVARDFIERVKTKSL 60

Query: 76  AKDVSVQRVL--YDVSELIHKMLMPLSKPFN--WDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++V ++ V     + ++IH  L+ L    N   + S  P  I++VG++G GKTT   KL
Sbjct: 61  GQEV-IESVHPGQQIIKIIHDELVELLGSTNAGLNLSGNPASIMMVGLHGSGKTTSSAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K ++  G + +L A D +R AA+DQL+    +        +  +D  A+A EAF  A+A
Sbjct: 120 AKLLTKQGRQPVLVAADVYRPAAMDQLETLGKQLGIPVFLKKGETDVLAIAREAFDFARA 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              + LI DTAGRL  +  L+  + ++  ++K      P  +L VLDA TGQ A+     
Sbjct: 180 NNRNTLIFDTAGRLQIDEPLVQELVRLRDLVK------PQEILLVLDAATGQEAVNVATH 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG I+TK+DG ARGG  + +      P+   G GE + D EPF  +  ++ I 
Sbjct: 234 FDQALNITGSILTKLDGDARGGAALSMKAVTGKPIKLAGTGEKLEDFEPFHPERMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|300718048|ref|YP_003742851.1| Signal recognition particle protein (Fifty-four homolog) [Erwinia
           billingiae Eb661]
 gi|299063884|emb|CAX61004.1| Signal recognition particle protein (Fifty-four homolog) [Erwinia
           billingiae Eb661]
          Length = 453

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 162/309 (52%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDNLTDRLSQSLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           +DV+      Q  +  V SEL+  M    +   N   +  P V+L+ G+ G GKTT +GK
Sbjct: 62  QDVNKSLTPGQEFVKIVQSELVAAMGAE-NNTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A++   DF  S++      +   A +QA
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFCPSDLSQKPVDIVKNALQQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A 
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HAAINPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+I+TK+DG ARGG  + I      P+ F+GVGE  + LEPF  +  
Sbjct: 231 NTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFMGVGEKTDALEPFYPERI 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|268325095|emb|CBH38683.1| putative signal recognition particle protein [uncultured archaeon]
          Length = 350

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/259 (35%), Positives = 138/259 (53%), Gaps = 20/259 (7%)

Query: 56  SDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFS-- 108
           SD+  +VA++I      EL+ KR       +R+   V E +   L+   S     DF   
Sbjct: 82  SDVAFSVAEEIKVSVKRELVGKRRKWGADTERL---VEEAVRNALLNVFSADSELDFDAF 138

Query: 109 ----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
                +P +I+ VGVNG GKTT I K++KK+   G  V++AA DT+R+ A +Q++  A  
Sbjct: 139 VDEGKKPIIIVFVGVNGTGKTTSIAKVAKKLLGTGHSVVIAAADTYRAGAAEQIETHASN 198

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                +  + GSD AA+ Y+A K A A  +DV++ DTAGR+H +  LM  + K+ RV K 
Sbjct: 199 LGLKVIKHQYGSDPAAVVYDANKYASANGIDVVLADTAGRMHTSINLMEQLKKICRVTK- 257

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  VL V +A  G +A+ + + F+   G    I+TK+D  A+GG  I I  +   
Sbjct: 258 -----PDMVLFVDEAVAGNDAVERAKKFNEDIGIDAAILTKVDVDAKGGTAISIAHSTSK 312

Query: 285 PVYFLGVGEGINDLEPFVA 303
           P+ FLG G+  +DL  F A
Sbjct: 313 PILFLGKGQDYDDLVEFDA 331


>gi|332297636|ref|YP_004439558.1| signal recognition particle-docking protein FtsY [Treponema
           brennaborense DSM 12168]
 gi|332180739|gb|AEE16427.1| signal recognition particle-docking protein FtsY [Treponema
           brennaborense DSM 12168]
          Length = 292

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/263 (38%), Positives = 146/263 (55%), Gaps = 7/263 (2%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           D+   +EL D+LI  D+G      IVE+L  +++ +D+ +      ++EL   +L  + K
Sbjct: 21  DESFFDELADILIEGDLGAKNVFDIVEKL--QKHCRDLHISEEREIIAELKRMLLEFVKK 78

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKI 160
                 + + +V L++GVNGVGKTT   KL+      G   V+LAA DTFR+AAIDQL I
Sbjct: 79  VELAPDAEKVNVYLLLGVNGVGKTTSAAKLASFYDGMGKYNVVLAAADTFRAAAIDQLLI 138

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
             +R     V  + GSD +A+ ++A     +K   ++I DTAGRLHN   L+  + K+ R
Sbjct: 139 HGERLGIRVVAHQHGSDPSAVVFDAADAVASKGGGLVIADTAGRLHNKENLVRELQKIDR 198

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           +         +  + V+D TTGQNA RQ E+FH   G   +I+TK D TA+GG  I   +
Sbjct: 199 IASSKADAGCYKKILVVDGTTGQNAFRQAEVFHEAVGLDAVILTKYDSTAKGG--IAAAI 256

Query: 281 THK--IPVYFLGVGEGINDLEPF 301
            H   IPV F+  GE  ND+ PF
Sbjct: 257 GHDLGIPVAFVCFGESYNDIRPF 279


>gi|15594157|dbj|BAB64926.1| signal recognition particle protein 54 [Pyrococcus furiosus]
          Length = 443

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 142/273 (52%), Gaps = 13/273 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKP 102
           +++  LI++D+ V +  ++  E+    L ++    +S  + ++  V E + K L   +KP
Sbjct: 34  DIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP 93

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
              +   +P ++L+VG+ G GKTT + KL++     G KV +   DT+R  A  QL+   
Sbjct: 94  I--EIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQVL 151

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           DR   +   +    DA  LA E     ++K VD++I+DTAGR   +  L+  + ++  V+
Sbjct: 152 DRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVI 211

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                  PH V+ V+D T GQ A  Q   F        +I+TK+DG+A+GGG +  V   
Sbjct: 212 H------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAAT 265

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+G GE I+D+EPF    F + + G  D
Sbjct: 266 GAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGD 298


>gi|296133550|ref|YP_003640797.1| signal recognition particle protein [Thermincola sp. JR]
 gi|296032128|gb|ADG82896.1| signal recognition particle protein [Thermincola potens JR]
          Length = 450

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 117/208 (56%), Gaps = 6/208 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V+++VG+ G GKTT +GKL  ++   G + +L A D +R AAI QLK+  ++ + 
Sbjct: 98  SKPPTVVMLVGLQGAGKTTTVGKLGNQLRKQGRRPLLVAADVYRPAAIKQLKVLGEQLNI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                   ++   +A  A + A++   D+++IDTAGRLH N  LM  +  +   +K    
Sbjct: 158 PVFSLGDKTNPVDIAKAAVEHAKSYGNDMVLIDTAGRLHINEELMEELKNIKESVK---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             PH +L V+DATTGQ+A+   + F    G  G+I+TK+DG  RGG  + +      P+ 
Sbjct: 214 --PHEILFVMDATTGQDAVNVAKTFDEQLGIDGVIITKLDGDTRGGAALSVKAVTGKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G+GE ++ LEPF     ++ I G  D
Sbjct: 272 FVGMGEKLDALEPFFPDRMASRILGMGD 299


>gi|227486503|ref|ZP_03916819.1| signal recognition particle protein Ffh [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227235506|gb|EEI85521.1| signal recognition particle protein Ffh [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 446

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 155/305 (50%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+E +  +    +L+    D    E+   L+ +D+   V +  V+ +  K  +
Sbjct: 3   FESLSDRLQEALGKLTGKGKLNEKDIDNAMREIRLSLLEADVNYKVVKDFVKTI--KERS 60

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V   L     V +++++ L  L    N   + R   PH++++VG+ G GKTT  GK
Sbjct: 61  LGTEVMNSLSPGQMVVKIVNEELTSLMGKENSKLALRGGTPHMVMMVGLQGSGKTTHSGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L K +       MLAA D +R AAI+QLK+   + +  FV  +   D   +A EA   A+
Sbjct: 121 LVKMLQKENRNPMLAALDIYRPAAIEQLKVVGKQANT-FVFEKGKEDPVKIAKEAKDYAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D +I+DTAGRL  ++ LM  +  +  V+K      P  +L V+DA TGQ A+   +
Sbjct: 180 INNYDTVILDTAGRLQIDTDLMDELKAIKEVVK------PDEILLVVDAMTGQEAVNVAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + I      P+ F+GVGE ++DLEPF     ++ I
Sbjct: 234 SFDDYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGVGEKLDDLEPFYPDRMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|237729526|ref|ZP_04560007.1| signal recognition particle protein [Citrobacter sp. 30_2]
 gi|226908132|gb|EEH94050.1| signal recognition particle protein [Citrobacter sp. 30_2]
          Length = 453

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|289806535|ref|ZP_06537164.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 447

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 153/287 (53%), Gaps = 18/287 (6%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDV-S 89
           R  +D V+E L ++   L+ +D+ + V ++ +  +  K    +V+      Q  +  V S
Sbjct: 15  RLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRS 74

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGD 148
           EL+  M    ++  N   +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D
Sbjct: 75  ELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 132

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +R AAI QL+  A++   DF  S++G     +   A K+A+ K  DVL++DTAGRLH +
Sbjct: 133 VYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVD 192

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M  I ++   +K      P   L V+DA TGQ+A    + F+     TG+++TK+DG
Sbjct: 193 EAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDG 246

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            ARGG  + I      P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 247 DARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGD 293


>gi|123966680|ref|YP_001011761.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9515]
 gi|123201046|gb|ABM72654.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9515]
          Length = 492

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 153/287 (53%), Gaps = 16/287 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS- 89
           IS   +DD +++ ++  L+ +D+ ++V ++ V ++  K   +DV       Q+ +  V+ 
Sbjct: 22  ISENNIDDALKQ-VKKALLDADVSLSVVKEFVSDVKDKAIGEDVVRGVNPGQKFIEVVNK 80

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           ELI+ M    S  F  +    P VIL+ G+ G GKTT  GKL   + +   KV+L A D 
Sbjct: 81  ELINVMGNENSPLFEKETP--PTVILMAGLQGAGKTTATGKLGLYLKEKEKKVLLVAADI 138

Query: 150 FRSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           +R AA++QLK   ++   + F   E  S    +A +A   A    VD LI+DTAGRL  +
Sbjct: 139 YRPAAVEQLKTIGNQYDLEVFSAKEKDSKPEEIAKDALIYANENNVDTLIVDTAGRLQID 198

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
            ++M+   +M+R+ +  +P     VL V+D+  GQ A    + FH   G +G I+TK+DG
Sbjct: 199 ELMMS---EMVRIKEVTNPD---EVLLVVDSMIGQEAADLTKSFHEKVGISGAILTKLDG 252

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +RGG  + I      P+ F+G GE I  L+PF  +  ++ I G  D
Sbjct: 253 DSRGGAALSIRKISGKPIKFIGTGEKIEALQPFHPERMASRILGMGD 299


>gi|154151418|ref|YP_001405036.1| signal recognition particle-docking protein FtsY [Candidatus
           Methanoregula boonei 6A8]
 gi|153999970|gb|ABS56393.1| signal recognition particle-docking protein FtsY [Methanoregula
           boonei 6A8]
          Length = 344

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 146/275 (53%), Gaps = 17/275 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE----LLTKRYAKDVSVQRVLYDVSE 90
           ++S + + D +  ELE  L+ SD+ + V   ++ +    L+ K      SV  ++  V  
Sbjct: 65  VVSEKDIADAL-SELEMTLLESDVALPVTDALIADIRAGLVGKHRKIGESVDSLV--VRS 121

Query: 91  LIHKMLMPLSKPFN---WDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           L   +L  L + F+   +  SH RP  IL  GVNG GKTT + K+   +   G  V++ A
Sbjct: 122 LKSALLKVLGQGFDLPAYIRSHERPVKILFTGVNGTGKTTTVAKIGAYLKKEGFSVVIGA 181

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
           GDTFR+ AI+Q+ + A+R     +  + G+D +A+ ++  + A A K DV++ DTAGR H
Sbjct: 182 GDTFRAGAIEQIGVHAERLGIKVIEHQTGADPSAVLFDTVQYAIAHKTDVVLADTAGRFH 241

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
             + LM+ + K+ RV+K      P  ++ V +A  G +A+ +   F    G   +++TK 
Sbjct: 242 TKANLMSQLEKIRRVMK------PDLIVYVDEAVAGNDAVVRAAEFDKTVGADAIVLTKA 295

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           D  +RGG  I I  T   P+ FLG G+   D+ PF
Sbjct: 296 DMDSRGGAAISIAHTIGKPLLFLGTGQAYEDIMPF 330


>gi|326204801|ref|ZP_08194655.1| signal recognition particle protein [Clostridium papyrosolvens DSM
           2782]
 gi|325985013|gb|EGD45855.1| signal recognition particle protein [Clostridium papyrosolvens DSM
           2782]
          Length = 436

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 157/304 (51%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F   S KL+E I  I     +S + + D +RE ++  L+ +D+   V ++ + ++  +  
Sbjct: 4   FEGLSGKLQETIKKIRGQGRVSEKDVKDMMRE-IKLALLEADVNFKVVKEFISKVSERAV 62

Query: 76  AKDVSVQRVL-YDVSELIHKMLMPL--SKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKL 131
             DV         V +++H+ L+ L   +     F+ +P  I ++ G+ G GKTT  GKL
Sbjct: 63  GSDVLESLTPGQQVVKIVHEELIELLGREQSKVTFASKPPTIFMMAGLQGAGKTTTAGKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL++  ++ +      E   +   +A EA   A+ 
Sbjct: 123 ANLLRKQGKNPLLVACDVYRPAAIKQLQVLGNQLNIPVFTLEDNQNPVQIAKEAVSFAEK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K+ D++IIDTAGRLH +  LM  +  +   +K      PH +L V+D+ TGQ+A+   E 
Sbjct: 183 KQHDLVIIDTAGRLHIDEKLMDELLNIKNSVK------PHEILLVVDSMTGQDAVNVSET 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DG  RGG  + +      P+ F  +GE +ND+EPF     ++ I 
Sbjct: 237 FNKKLGIDGVVLTKLDGDTRGGAALSVKSVTGKPIKFAAMGEKLNDIEPFFPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|312898910|ref|ZP_07758298.1| signal recognition particle protein [Megasphaera micronuciformis
           F0359]
 gi|310620072|gb|EFQ03644.1| signal recognition particle protein [Megasphaera micronuciformis
           F0359]
          Length = 449

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/277 (32%), Positives = 144/277 (51%), Gaps = 15/277 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101
           +E+   L+ +D+  AV +  ++ +  K   ++V     + Q V+  V + +  +L     
Sbjct: 33  KEMRRALLEADVNFAVTKDFIKRVREKAVGEEVFSTLNAAQTVIKIVRDELTDLLGGTQS 92

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                 S  P V+++ G+ G GKTT   KL+K+    G   +L A D +R AAI+QL++ 
Sbjct: 93  RITIS-SRPPTVVMLAGLQGAGKTTTAAKLAKRFVRQGKHPLLVACDVYRPAAIEQLRVL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
               +      +   D  A+A  A   A +   DV+I+DTAGRLH +  LM   G+++R+
Sbjct: 152 GKELNIPVYSEDDSKDPVAIAERAVPYATSHLCDVVIVDTAGRLHIDEDLM---GELVRI 208

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
             + D H PH +L V+DA TGQ+A+   E F    G  G+IMTK+DG ARGG  + +   
Sbjct: 209 --KEDIH-PHEILLVVDAMTGQDAVTAAEAFDKALGIDGVIMTKLDGDARGGAALSVKAV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
              P+ F+GV E  + LE F    +++ I   LD G+
Sbjct: 266 TGKPIKFIGVSEKTDGLEEFHPDRYASRI---LDLGD 299


>gi|83589815|ref|YP_429824.1| signal recognition particle subunit FFH/SRP54 (srp54) [Moorella
           thermoacetica ATCC 39073]
 gi|83572729|gb|ABC19281.1| signal recognition particle subunit FFH/SRP54 (srp54) [Moorella
           thermoacetica ATCC 39073]
          Length = 447

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FAS + KL+E    +    +L +        E+   L+ +D+   V +  V  +  +   
Sbjct: 4   FASLADKLQETFKKLRGKGKLTEADVTAAMREIRLALLEADVNFKVVKDFVNRVKERAVG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V E +  ++       NW  S  P VI++ G+ G GKTT   KL
Sbjct: 64  QEVMQSLTPGQQVVKIVHEELTALMGGGESKINWA-SQPPTVIMLAGLQGAGKTTTAAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++   + G + +L A D +R AAI QL++  ++          GS    +A  A + A+ 
Sbjct: 123 ARLAQNQGRRPLLVAADVYRPAAIKQLQVLGEQLKVPVFSMGEGSSPVDIARAAVEHART 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              + +I+DTAGRLH N  +MA +  +   ++      P  +L V+DA TGQ+A++    
Sbjct: 183 HGSNPVILDTAGRLHINETMMAELAAIKEAVR------PQEILLVVDAMTGQDAVQVAST 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG+I+TK+DG  RGG  + I      P+ F+G+GE    LE F     ++ I 
Sbjct: 237 FHQQLGLTGVILTKLDGDTRGGAALSIRAVTGCPIKFIGMGEKTEALETFHPDRLASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|253689573|ref|YP_003018763.1| signal recognition particle protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756151|gb|ACT14227.1| signal recognition particle protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 453

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 157/306 (51%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D ++E L ++   L+ +D+ + V +  +  +  K  A
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINRV--KERA 59

Query: 77  KDVSVQRVLYDVSE---LIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGK 130
               V + L    E   ++   L+      N + +     P V+L+ G+ G GKTT +GK
Sbjct: 60  VGHEVNKSLTPGQEFVKIVKNELVSAMGEINAELNLAAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A++   DF  S++     A+   A + A
Sbjct: 120 LGKFLREKQKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVQEKPLAIVERALQHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF  +  ++ 
Sbjct: 234 KAFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPERVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|15791234|ref|NP_281058.1| signal recognition particle receptor [Halobacterium sp. NRC-1]
 gi|169236990|ref|YP_001690190.1| signal recognition particle receptor SRalpha [Halobacterium
           salinarum R1]
 gi|10581862|gb|AAG20538.1| signal recognition particle receptor [Halobacterium sp. NRC-1]
 gi|167728056|emb|CAP14844.1| signal recognition particle receptor SRalpha [Halobacterium
           salinarum R1]
          Length = 373

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 149/295 (50%), Gaps = 23/295 (7%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           + GF S +  +  G   +I    L+  +RE LE  L+ SD+ ++V    VEE+L +    
Sbjct: 76  SAGFVSRAASMARGRV-VIDEADLEAPLRE-LEFALLESDVEMSV----VEEILDQIRGD 129

Query: 78  DVSVQRVLYD-----VSELIHKMLMPLSKPFNWDF------SHRPHVILVVGVNGVGKTT 126
            V  +R   +     + + + + L+ +     +D       + +P  I+  GVNGVGKTT
Sbjct: 130 LVGEERKFTESTDTLIEDALREALLSVIDVGQFDLVDEIESTSKPVTIVFTGVNGVGKTT 189

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            I KL++ +   G   +LA GDT+R+ A  Q++  A+      +  E G D  A+ Y+A 
Sbjct: 190 TIAKLARYLESEGFSSVLANGDTYRAGANQQIEEHAEALGVKCITHEQGGDPTAVVYDAV 249

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A A  VDV++ DTAGRLH +  LM+ + K+ RV+       P   + V +A  GQ+A+
Sbjct: 250 EYADANDVDVVLGDTAGRLHTSDDLMSQLEKLDRVVD------PDVTVFVDEAVAGQDAV 303

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            +   F   +   G I+T  D  ++GG  I +      P+ FLG G+   DLEPF
Sbjct: 304 NRAREFDEASAVDGTILTMADADSQGGAAISVSHVTGKPILFLGTGQAYEDLEPF 358


>gi|165924213|ref|ZP_02220045.1| putative Signal recognition particle protein (Fifty-four homolog)
           [Coxiella burnetii RSA 334]
 gi|165916338|gb|EDR34942.1| putative Signal recognition particle protein (Fifty-four homolog)
           [Coxiella burnetii RSA 334]
          Length = 311

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 159/289 (55%), Gaps = 22/289 (7%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           R  ++ ++  L D+   LI +D+ + V +  +E +  K   ++V        ++ +V+ D
Sbjct: 21  RLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALGQEVIGNVRPGEALVKVVQD 80

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146
             EL H +   L +  N + +  P VI++ G+ G GKTT + KL++ + +   K VM+A+
Sbjct: 81  --ELTHLLGDELVE-INLN-AQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVAS 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AAI QL+  A + +A F  ++       +A  A KQA+ + +DVLI+DTAGRLH
Sbjct: 137 ADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLH 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +++LM  + K I      D   P  +L V+D+  GQ+A    + F+     TG+I+TK+
Sbjct: 197 IDNVLMEEM-KAIS-----DAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKL 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + + +  + P+ F+GVGE I+ LEPF     ++ I G  D
Sbjct: 251 DGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRILGMGD 299


>gi|227115236|ref|ZP_03828892.1| signal recognition particle protein [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 453

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 157/306 (51%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D ++E L ++   L+ +D+ + V +  +  +  K  A
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINRV--KERA 59

Query: 77  KDVSVQRVLYDVSE---LIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGK 130
               V + L    E   ++   L+      N + +     P V+L+ G+ G GKTT +GK
Sbjct: 60  VGHEVNKSLTPGQEFVKIVKNELVSAMGEINAELNLAAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A++   DF  S++     A+   A + A
Sbjct: 120 LGKFLREKQKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVQEKPLAIVERALQHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF  +  ++ 
Sbjct: 234 KAFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPERVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|153006211|ref|YP_001380536.1| signal recognition particle protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029784|gb|ABS27552.1| signal recognition particle protein [Anaeromyxobacter sp. Fw109-5]
          Length = 550

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 161/317 (50%), Gaps = 24/317 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            +  ++KGF +   KLK G T+I +   +DD +R+ +   L+ +D+   V ++ V  +  
Sbjct: 1   MLETVSKGFKAARNKLK-GRTEI-TPEVVDDALRD-IRVSLLEADVSFDVVKRFVARVRE 57

Query: 73  KRYAK----DVSVQRVLYDVS------ELIHKMLMPLSKPFNWDFSH----RPHVILVVG 118
           K   +     V  ++ +  V+      ++ H  L  L  P +    H    RP  I++VG
Sbjct: 58  KAIGEVVDTKVKTEKGVVRVTPQDHFVKICHDELEALMGPVDTSLRHGERGRPTGIMMVG 117

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT  GK++ K+   G + +L A D +R AA+DQLK+  +R     V  E G   
Sbjct: 118 LQGSGKTTTAGKIASKLLKEGKRPLLVAADVYRPAAVDQLKVLGERLGVP-VFHEPGVSP 176

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +   AF+ A  +K +V+I DTAGRL  +  LM  + ++ R +      AP ++L V D
Sbjct: 177 PEMCRHAFEAAPREKANVVIYDTAGRLAVDEELMVELEEIKRHV------APENILLVAD 230

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A++    F       G I+TK+DG ARGG  + I      P+ FLG+GE ++ L
Sbjct: 231 AMIGQDAVKTAAEFDRRLALDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGESLDRL 290

Query: 299 EPFVAKDFSAVITGCLD 315
           E F  +  ++ I G  D
Sbjct: 291 EEFRPEGLASRILGFGD 307


>gi|302542219|ref|ZP_07294561.1| signal recognition particle FtsY [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459837|gb|EFL22930.1| signal recognition particle FtsY [Streptomyces himastatinicus ATCC
           53653]
          Length = 405

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 153/291 (52%), Gaps = 24/291 (8%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
           S   LDD   EE+ED L+ +D+GVA  Q++VE L  +           L  +       L
Sbjct: 123 SREHLDDDTWEEIEDTLLTADVGVAPTQELVERLRERVKVLGTRTPDELRGLLREELLHL 182

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGK--------------TTVIGKLSKKMSDAGLKV 142
           +        +     H    VG NG  K              TT  GKL++ +   G  V
Sbjct: 183 V------GTEADRTVHTEGGVGTNGEEKPGVVMVVGVNGTGKTTTTGKLARVLVADGKSV 236

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA DQL+ W +R  A  V    G D A++ ++A K+  A+  DV++IDTA
Sbjct: 237 VLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASVGFDAVKEGIAESADVVLIDTA 296

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           GRLH  + LM  +GK+ RV+++   H     VL VLDATTGQN L Q  +F  V   TG+
Sbjct: 297 GRLHTKTGLMDELGKVKRVVEK---HGTVDEVLLVLDATTGQNGLVQARVFREVVDITGI 353

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           ++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 354 VLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADDLAPFEPEAFVDALIG 404


>gi|296127634|ref|YP_003634886.1| signal recognition particle-docking protein FtsY [Brachyspira
           murdochii DSM 12563]
 gi|296019450|gb|ADG72687.1| signal recognition particle-docking protein FtsY [Brachyspira
           murdochii DSM 12563]
          Length = 319

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 157/287 (54%), Gaps = 13/287 (4%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVS 80
           TS K K  ++ + ++  ++D     LE+ LI +D GV   + I+ +L   + K   K+ S
Sbjct: 36  TSAKSKFSLSSLFNTSSINDEFFASLENTLITADAGVETTKDIISKLREAIEKENIKEPS 95

Query: 81  -VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             ++ L ++  LI K +   SK          +++ +VGVNGVGKTT I KL+  +    
Sbjct: 96  EAKKYLREI--LISKFI---SKKIEL---KDKNILFIVGVNGVGKTTSIAKLANILKKDH 147

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+LAA DTFR+AAI+QL+ WA+R S   V  +   D A++ + A  +A+A   D++I+
Sbjct: 148 -KVILAAADTFRAAAIEQLEEWANRLSVTIVKGQQAGDPASVLFSALDKAKAANADIVIV 206

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGR HN   L+  + KM ++            + VLDA  G N + Q ++F       
Sbjct: 207 DTAGRFHNQENLVRQLEKMKKIATERFSEFNFIPILVLDANVGHNGIEQAKVFTNALNIQ 266

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G I++K+D TA+GG  I I     +P+Y+ G GE ++D + F A+ F
Sbjct: 267 GAIVSKLDSTAKGGVAISIAHYLSLPIYYGGFGEKVDDFKEFDAESF 313


>gi|320587877|gb|EFX00352.1| signal recognition particle protein srp54 [Grosmannia clavigera
           kw1407]
          Length = 530

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 154/301 (51%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80
           ++   ++D+  +  +D    D + +E+ + L+ +D+ V +  ++ + +      KD+   
Sbjct: 9   RINAAVSDLTRAPNIDEKAFDSMLKEIGNALVEADVNVKLVAQLRKSIKGTVNFKDLPPA 68

Query: 81  ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                 +Q+ ++D  EL+  ++ P S+PF      + +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELVQ-LVDPHSEPFKPK-KGKTNVIMFVGLQGAGKTTSCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +  L   DTFR+ A DQLK  A +    +  S   +D A +A +  ++ + ++ 
Sbjct: 125 YQSRGFQACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVARDGVEKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR    S L     +MI + + +    P   + VLDAT GQ A  Q + F  
Sbjct: 185 DIIIVDTSGRHRQESALFQ---EMIDIQEAV---KPDETIMVLDATIGQQAEAQAKAFKE 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A+GGG I  V   + P+ FLG GE + DLE F  + F   + G  
Sbjct: 239 AADFGAIIITKTDGHAKGGGAISAVAATRTPIVFLGTGEHMLDLERFAPQQFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|283835680|ref|ZP_06355421.1| signal recognition particle protein [Citrobacter youngae ATCC
           29220]
 gi|291068895|gb|EFE07004.1| signal recognition particle protein [Citrobacter youngae ATCC
           29220]
          Length = 453

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|283786230|ref|YP_003366095.1| signal recognition particle protein [Citrobacter rodentium ICC168]
 gi|282949684|emb|CBG89303.1| signal recognition particle protein [Citrobacter rodentium ICC168]
          Length = 453

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 159/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQSLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|290889936|ref|ZP_06553022.1| hypothetical protein AWRIB429_0412 [Oenococcus oeni AWRIB429]
 gi|290480378|gb|EFD89016.1| hypothetical protein AWRIB429_0412 [Oenococcus oeni AWRIB429]
          Length = 156

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 95/146 (65%)

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           WA R   D V  +  SD A++ ++  K++     D+L +DTAGRL NN  LM  + KM +
Sbjct: 2   WAHRDQVDVVTGKEKSDPASVVFDGVKKSIDGHYDILFVDTAGRLQNNDNLMRELEKMKK 61

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           ++ R  P+AP  VL VLDATTGQNAL+Q  +F      TGL++TK+DGTA+GG ++ I  
Sbjct: 62  IITRQLPNAPQEVLLVLDATTGQNALQQARLFKDSTDVTGLVLTKLDGTAKGGIVLAIRQ 121

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDF 306
              +PV ++G+GE ++DLEPF A +F
Sbjct: 122 ELHLPVKWVGLGEKVDDLEPFNADEF 147


>gi|209364128|ref|YP_001424962.2| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii
           Dugway 5J108-111]
 gi|207082061|gb|ABS77866.2| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii
           Dugway 5J108-111]
          Length = 467

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 159/289 (55%), Gaps = 22/289 (7%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           R  ++ ++  L D+   LI +D+ + V +  +E +  K   ++V        ++ +V+ D
Sbjct: 27  RLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALGQEVIGNVRPGEALVKVVQD 86

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146
             EL H +   L +  N + +  P VI++ G+ G GKTT + KL++ + +   K VM+A+
Sbjct: 87  --ELTHLLGDELVE-INLN-AQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVAS 142

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AAI QL+  A + +A F  ++       +A  A KQA+ + +DVLI+DTAGRLH
Sbjct: 143 ADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLH 202

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +++LM  + K I      D   P  +L V+D+  GQ+A    + F+     TG+I+TK+
Sbjct: 203 IDNVLMEEM-KAIS-----DAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKL 256

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + + +  + P+ F+GVGE I+ LEPF     ++ I G  D
Sbjct: 257 DGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRILGMGD 305


>gi|224088549|ref|XP_002308469.1| predicted protein [Populus trichocarpa]
 gi|222854445|gb|EEE91992.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 155/309 (50%), Gaps = 23/309 (7%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----- 70
           +LT G  S   KLK    ++++   + + +R+ +   L+ +D+ + V ++ V+ +     
Sbjct: 92  QLTSGLESAWNKLKG--EEVLTKENIAEPMRD-IRRALLEADVSLPVVRRFVQSVGDQAV 148

Query: 71  ---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
              L +    D    +++ D  EL+  M   +S+     F+   P VIL+ G+ GVGKTT
Sbjct: 149 GVGLIRGVKPDQQFVKIVRD--ELVKLMGGEVSELV---FAKSGPTVILLAGLQGVGKTT 203

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           +  KL+  +   G   ML AGD +R AAIDQL I  ++              + +A +  
Sbjct: 204 ICAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVSVYTEGTDVKPSEIARKGL 263

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+ K +DV+I+DTAGRL  +  +M  +  + RVL       P  VL V+DA TGQ A 
Sbjct: 264 AEAKKKNIDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQEAA 317

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF     
Sbjct: 318 ALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEISGKPIKLVGRGERMEDLEPFYPDRM 377

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 378 AGRILGMGD 386


>gi|213408098|ref|XP_002174820.1| signal recognition particle protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212002867|gb|EEB08527.1| signal recognition particle protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 537

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 143/282 (50%), Gaps = 20/282 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKI---------VEELLTKRYAKDVSVQRVLYDVSELIH 93
           DGV + +   L+ SD+ V + Q++         V+ L      K V VQ+ ++D  EL  
Sbjct: 29  DGVLKSICKALLESDVNVRLVQELRGNIKKRINVKSLPAGPNGKRV-VQKAVFD--ELCD 85

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            +L P ++ F      RP+VI+ VG+ G GKTT   KL+      G K  L A DTFR+ 
Sbjct: 86  -LLDPKTQAFTPK-KGRPNVIMFVGLQGSGKTTTCTKLALYYQRRGFKSCLVAADTFRAG 143

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQLK  A +    F  S   +D   +A     + + ++ D++I+DT+GR      L  
Sbjct: 144 AFDQLKQNALKARIPFYGSYTEADPVVVAQTGVDKFKKERFDIIIVDTSGRHQQEKEL-- 201

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              +MI + + +    P+  + VLDA+ GQ A  Q   F   A    +I+TK+DG A+GG
Sbjct: 202 -FNEMIEISEAV---RPNQTIMVLDASIGQAAESQSRAFKESANFGAVIVTKLDGHAKGG 257

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +  V   K P+ F+G GE INDLE F  + F + + G  D
Sbjct: 258 GALSAVAATKTPIIFIGTGEHINDLERFSPRSFISKLLGMGD 299


>gi|212213064|ref|YP_002304000.1| signal recognition particle, subunit ffh/srp54 [Coxiella burnetii
           CbuG_Q212]
 gi|212011474|gb|ACJ18855.1| signal recognition particle, subunit ffh/srp54 [Coxiella burnetii
           CbuG_Q212]
          Length = 461

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 159/289 (55%), Gaps = 22/289 (7%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           R  ++ ++  L D+   LI +D+ + V +  +E +  K   ++V        ++ +V+ D
Sbjct: 21  RLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALGQEVIGNVRPGEALVKVVQD 80

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146
             EL H +   L +  N + +  P VI++ G+ G GKTT + KL++ + +   K VM+A+
Sbjct: 81  --ELTHLLGDELVE-INLN-AQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVAS 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AAI QL+  A + +A F  ++       +A  A KQA+ + +DVLI+DTAGRLH
Sbjct: 137 ADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLH 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +++LM  + K I      D   P  +L V+D+  GQ+A    + F+     TG+I+TK+
Sbjct: 197 IDNVLMEEM-KAIS-----DAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKL 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + + +  + P+ F+GVGE I+ LEPF     ++ I G  D
Sbjct: 251 DGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRILGMGD 299


>gi|153209914|ref|ZP_01947538.1| signal recognition particle protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218940|ref|YP_002305727.1| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii
           CbuK_Q154]
 gi|120575215|gb|EAX31839.1| signal recognition particle protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212013202|gb|ACJ20582.1| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii
           CbuK_Q154]
          Length = 460

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 159/289 (55%), Gaps = 22/289 (7%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           R  ++ ++  L D+   LI +D+ + V +  +E +  K   ++V        ++ +V+ D
Sbjct: 21  RLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALGQEVIGNVRPGEALVKVVQD 80

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146
             EL H +   L +  N + +  P VI++ G+ G GKTT + KL++ + +   K VM+A+
Sbjct: 81  --ELTHLLGDELVE-INLN-AQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVAS 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AAI QL+  A + +A F  ++       +A  A KQA+ + +DVLI+DTAGRLH
Sbjct: 137 ADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLH 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +++LM  + K I      D   P  +L V+D+  GQ+A    + F+     TG+I+TK+
Sbjct: 197 IDNVLMEEM-KAIS-----DAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKL 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + + +  + P+ F+GVGE I+ LEPF     ++ I G  D
Sbjct: 251 DGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRILGMGD 299


>gi|297617092|ref|YP_003702251.1| signal recognition particle protein [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144929|gb|ADI01686.1| signal recognition particle protein [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 447

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 114/205 (55%), Gaps = 7/205 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+++VG+ G GKTT   KL++ +   G + +L A D +R AAI QL++  ++ +   V
Sbjct: 101 PTVVMMVGLQGTGKTTTCAKLARSLLAQGRRPLLVAADIYRPAAIKQLQVLGEKCNCP-V 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S    +   +A  A + A++   D++I+DTAGRLH N  LM  +  +   L       P
Sbjct: 160 FSMGQENPVNIARAALEYARSNGRDIVILDTAGRLHINEELMNELKDLKSSLN------P 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H +L V+DA TGQ+A+     F+   G TG+++TK+DG  RGG  + +      P+ F G
Sbjct: 214 HEILLVVDAMTGQDAVNVASSFNEQLGLTGVVLTKLDGDTRGGAALSVKAVAGCPIKFAG 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           VGE + DLEPF     ++ I G  D
Sbjct: 274 VGEKLEDLEPFYPNRMASRILGMGD 298


>gi|161830238|ref|YP_001596381.1| signal recognition particle protein [Coxiella burnetii RSA 331]
 gi|161762105|gb|ABX77747.1| signal recognition particle protein [Coxiella burnetii RSA 331]
          Length = 461

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 159/289 (55%), Gaps = 22/289 (7%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           R  ++ ++  L D+   LI +D+ + V +  +E +  K   ++V        ++ +V+ D
Sbjct: 21  RLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALGQEVIGNVRPGEALVKVVQD 80

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146
             EL H +   L +  N + +  P VI++ G+ G GKTT + KL++ + +   K VM+A+
Sbjct: 81  --ELTHLLGDELVE-INLN-AQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVAS 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AAI QL+  A + +A F  ++       +A  A KQA+ + +DVLI+DTAGRLH
Sbjct: 137 ADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLH 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +++LM  + K I      D   P  +L V+D+  GQ+A    + F+     TG+I+TK+
Sbjct: 197 IDNVLMEEM-KAIS-----DAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKL 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + + +  + P+ F+GVGE I+ LEPF     ++ I G  D
Sbjct: 251 DGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRILGMGD 299


>gi|15679603|ref|NP_276720.1| signal recognition particle protein (docking protein)
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622733|gb|AAB86081.1| signal recognition particle protein (docking protein)
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 358

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/272 (34%), Positives = 150/272 (55%), Gaps = 13/272 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS-ELIHK 94
           I+ + +DD V  +LE  L+ SD+ + VA+KI  EL  +   + V     + + + E + K
Sbjct: 83  ITEKDVDD-VLWDLEMALLESDVALEVAEKITTELKEELVGRKVKRSTEISEYTMEALKK 141

Query: 95  MLMPLSKPFNWDFSH-----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            +  +      D        +P VI+ VG+NG GKTT I K+++     GL+ ++AA DT
Sbjct: 142 AVKDVLSVDGVDLPQLVEKKKPLVIMFVGINGTGKTTTIAKVARYFMKKGLEPVIAAADT 201

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ AI+Q+   AD+     +    G+D AA+A++A   A+A+  DV++IDTAGR+  N 
Sbjct: 202 FRAGAIEQIGQHADKLGVKLISHRKGADPAAVAFDAVSHAKAQGKDVVLIDTAGRMQTNV 261

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + K+ RV++      P  ++ V DA TG +A+ Q   F    G   +I+TK D  
Sbjct: 262 NLMDEMAKIKRVVR------PDLIVFVGDALTGNDAIEQAARFDEAVGIDAVILTKADAD 315

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           ARGG  + I    K P+ F+G+G+G +D+  F
Sbjct: 316 ARGGAALSIGYMIKRPIIFMGIGQGYDDIMEF 347


>gi|46143422|ref|ZP_00135299.2| COG0541: Signal recognition particle GTPase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 462

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 154/298 (51%), Gaps = 17/298 (5%)

Query: 28  LKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-- 81
           L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++  +    +V+   
Sbjct: 8   LSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALGTEVNKSL 67

Query: 82  ---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
              Q  L  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL+K + + 
Sbjct: 68  TPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKLAKFLKER 126

Query: 139 -GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+    DVL
Sbjct: 127 HKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKYAKLNFFDVL 186

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           I+DTAGRLH +  +M  I ++ RVL       P   L  +DA TGQ+A    + F+    
Sbjct: 187 IVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAKAFNEALP 240

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 241 LTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRILGMGD 298


>gi|307330024|ref|ZP_07609175.1| signal recognition particle-docking protein FtsY [Streptomyces
           violaceusniger Tu 4113]
 gi|306884285|gb|EFN15320.1| signal recognition particle-docking protein FtsY [Streptomyces
           violaceusniger Tu 4113]
          Length = 419

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/293 (37%), Positives = 158/293 (53%), Gaps = 28/293 (9%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE--LIHK 94
           S   LDD   EE+ED L+ +D+GVA  +++VE L  +         +VL   S   L   
Sbjct: 137 SREHLDDDTWEEIEDTLLTADVGVAPTEELVERLRER--------VKVLGTRSPDELRGL 188

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKT--------------TVIGKLSKKMSDAGL 140
           +   L +    +     H    VG NG  K               T  GKL++ +   G 
Sbjct: 189 LREELLRLIGTEADRSVHTESGVGANGEEKPGVVMVVGVNGTGKTTTTGKLARVLVADGK 248

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            V+L A DTFR+AA DQL+ W +R  A  V      D A++A++A K+  A+  DV++ID
Sbjct: 249 SVVLGAADTFRAAAADQLQTWGERVGARTVRGPEAGDPASVAFDAVKEGIAESADVVLID 308

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           TAGRLH  + LM  +GK+ RV+++   H A   VL VLDATTGQN L Q  +F  V   T
Sbjct: 309 TAGRLHTKTGLMDELGKVKRVVEK---HGAVDEVLLVLDATTGQNGLVQARVFAEVVDIT 365

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G+++TK+DGTA+GG ++ +    K+PV  +G+GEG +DL PF  + F   + G
Sbjct: 366 GIVLTKLDGTAKGGIVVAVQRELKVPVKLVGLGEGADDLAPFEPEAFVDALIG 418


>gi|238021560|ref|ZP_04601986.1| hypothetical protein GCWU000324_01460 [Kingella oralis ATCC 51147]
 gi|237866174|gb|EEP67216.1| hypothetical protein GCWU000324_01460 [Kingella oralis ATCC 51147]
          Length = 454

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 144/286 (50%), Gaps = 21/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHK 94
           +D ++E L ++   L+ +D+ + + +  V    E  L   +A D++  +  + +      
Sbjct: 24  EDNIKEALREVRLALLEADVALPIVKDFVNQVKERALGHEFAHDLTPDQAFFGIVNEALT 83

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRS 152
            LM          +  P  +L+ G+ G GKTT +GKLS+  K  D   K++L + D +R 
Sbjct: 84  ELMGKENSALNLAAAPPATVLMAGLQGAGKTTTVGKLSRLLKEQDKKKKILLVSADVYRP 143

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QLK+ A++   DF  S++      +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 144 AAIEQLKLLAEQVGVDFFPSDVSQKPVDIALAAQDYAKKHFYDVLMVDTAGRLAIDEEMM 203

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+I+TKMDG 
Sbjct: 204 NEIKAI---------HAAVNPVETLFVVDAMLGQDAVNTAQAFNEALPLTGVILTKMDGD 254

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ FLG+GE IN LEPF     +  I G  D
Sbjct: 255 SRGGAALSVRQVTGKPIKFLGIGEKINGLEPFYPDRVAGRILGMGD 300


>gi|296314847|ref|ZP_06864788.1| signal recognition particle protein [Neisseria polysaccharea ATCC
           43768]
 gi|296838348|gb|EFH22286.1| signal recognition particle protein [Neisseria polysaccharea ATCC
           43768]
          Length = 456

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 153/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVLI+DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLIVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I          D HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIK---------DLHAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|320100244|ref|YP_004175836.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfurococcus mucosus DSM 2162]
 gi|319752596|gb|ADV64354.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfurococcus mucosus DSM 2162]
          Length = 450

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 145/284 (51%), Gaps = 21/284 (7%)

Query: 41  LDDGVREELEDLLIRSDIGVAVA----QKIVEELLTKRYAKDVSVQR----VLYD-VSEL 91
           +D+ +RE L+  L+R+D+ + +A     +I E  L       +S +     V+Y+ ++ L
Sbjct: 23  VDEFIRE-LQKELVRADVNLKLAMELTSRIKERALKAEPPPGISRKEWFITVVYEELTRL 81

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +     P  KP     + +P VI++VG+ G GKTT   KL+      GL+V L A DTFR
Sbjct: 82  LGGERKPSVKP-----AKKPWVIMLVGLQGSGKTTTTAKLAYFYKLEGLRVGLVAADTFR 136

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            AA  QLK   ++           SDA A+A +  +  + +K+DV+IIDTAGR H    L
Sbjct: 137 PAAYMQLKQLGEQVGVPVYGEPGNSDAVAIAVKGVEFFRERKMDVIIIDTAGRHHREEDL 196

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           +  + KM   +K      P  V+ V+DA  GQ A      FH       +I+TK+DGTA+
Sbjct: 197 LEEMKKMSEHVK------PDEVMLVIDAAIGQQAFNIARRFHEATPIGSIIVTKLDGTAK 250

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GGG +  V      + F+G GE I++LE F    F + I G  D
Sbjct: 251 GGGALSAVAATGASIKFIGTGEKIDELEVFNPPRFVSRILGLGD 294


>gi|292491046|ref|YP_003526485.1| signal recognition particle protein [Nitrosococcus halophilus Nc4]
 gi|291579641|gb|ADE14098.1| signal recognition particle protein [Nitrosococcus halophilus Nc4]
          Length = 452

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 153/291 (52%), Gaps = 22/291 (7%)

Query: 37  SSRRLDDGVREELEDL---LIRSDIGVAVAQ----KIVEELLTKRYAKDVSVQRVLYDVS 89
            +R  +D +++ L ++   L+ +D+ + V +    K+ E  + +   + ++  +V     
Sbjct: 19  QARLTEDNIKDTLREVRVALLEADVALPVVRDFVAKVRERAIGQEVLRSLTPGQVFI--- 75

Query: 90  ELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VML 144
           +++H+ LM +    ++    D    P VIL+ G+ G GKTT + KL++ + +   K V++
Sbjct: 76  KIVHEELMAVMGEAAEGLKLDVRP-PAVILMAGLQGSGKTTTVAKLARWLKERQKKSVLV 134

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            + D +R AAI QL+  A     DF  SE   D   +A  AF+QA+ +  DVLIIDTAGR
Sbjct: 135 TSADVYRPAAIQQLETLAQEVEVDFYPSEASQDPVVIAQGAFQQARTRLFDVLIIDTAGR 194

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LH +  +MA I ++   ++      P   L V+D+ TGQ+A      F+     TG+I+T
Sbjct: 195 LHVDDQMMAEIKRLHGAVE------PAETLFVVDSMTGQDAANTARAFNDSLALTGVILT 248

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           K+DG ARGG  + I      P+ FLGVGE    LE F     ++ I G  D
Sbjct: 249 KVDGDARGGAALSIRQITGKPIKFLGVGEKTAALELFHPDRLASRILGMGD 299


>gi|152978431|ref|YP_001344060.1| signal recognition particle protein [Actinobacillus succinogenes
           130Z]
 gi|150840154|gb|ABR74125.1| signal recognition particle protein [Actinobacillus succinogenes
           130Z]
          Length = 463

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKVVRTELEAAMGESNESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  SE+  +   +   A  +A+
Sbjct: 121 AKFLHERHKKKVLVVSADVYRPAAIKQLETLAQAVHVDFFPSEVNQNPVDIVKAAVAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   L+      P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDGEMMDEIKQIHAALE------PVETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|237809533|ref|YP_002893973.1| signal recognition particle protein [Tolumonas auensis DSM 9187]
 gi|237501794|gb|ACQ94387.1| signal recognition particle protein [Tolumonas auensis DSM 9187]
          Length = 457

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 158/307 (51%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72
           F + + +L   + +I    RL DD +++ L ++   L+ +D+ + V ++ V    E  + 
Sbjct: 2   FETLTERLSATLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVKEFVNRVKERAVG 61

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIG 129
           +   K +S  +      +++H  L+ +    N D    +  P ++L+ G+ G GKTT + 
Sbjct: 62  QEVNKSLSPGQAFI---KIVHGELISVMGEANQDLNLATQPPAILLMAGLQGAGKTTSVA 118

Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K +++    KVM+ + D +R AAI QL+  A+    +F  S      A +A  A   
Sbjct: 119 KLAKFLTERQKKKVMVVSADVYRPAAIKQLETLANDIGIEFFPSSTSQTPAEIAAAALDS 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ +  DVLI+DTAGRLH +S +M  I ++ + L       P   L V+DA TGQ+A   
Sbjct: 179 ARKRYFDVLIVDTAGRLHVDSEMMEEIQQLHKQLN------PIETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK DG ARGG  + +      P+ F+G+GE  + LEPF     ++
Sbjct: 233 AKAFSEALPLTGVILTKADGDARGGAALSVRHITGKPIKFIGMGEKTDALEPFYPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|229829004|ref|ZP_04455073.1| hypothetical protein GCWU000342_01089 [Shuttleworthia satelles DSM
           14600]
 gi|229792167|gb|EEP28281.1| hypothetical protein GCWU000342_01089 [Shuttleworthia satelles DSM
           14600]
          Length = 451

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++    RL +D V+  L+++   L+ +D+   V +     +  +   
Sbjct: 3   FESLSEKLQNAFRNLRGKGRLSEDDVKLALKEIRIALLEADVNYRVVKDFTRAVQERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            D+       Q+V+  V E + +M+   ++   +       VI+++G+ G GKTT   KL
Sbjct: 63  TDILNGLNPAQQVVKLVDEELTRMMGSETREIAYRPGQEITVIMMIGLQGAGKTTTAAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + KM   G + +L A D +R AAIDQL+I A++    F      +  + +A  A++ A+ 
Sbjct: 123 AGKMKQKGKRPLLVACDIYRPAAIDQLRINAEKQQVAFFSMGDKNRPSDIARAAYEHARK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +VLI+DTAGRLH +  +MA + ++     +       ++L V+DA TGQ+A+   + 
Sbjct: 183 NNNNVLILDTAGRLHIDEDMMAELEEI-----KSGVDVAQTIL-VVDAMTGQDAVNVAQT 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+I+TK+DG +RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FDQKVGVDGVILTKLDGDSRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|254428353|ref|ZP_05042060.1| signal recognition particle protein [Alcanivorax sp. DG881]
 gi|196194522|gb|EDX89481.1| signal recognition particle protein [Alcanivorax sp. DG881]
          Length = 503

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 155/292 (53%), Gaps = 34/292 (11%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSE 90
           +D +R+ L ++   L+ +D+ + V ++ VE++  K   ++V        +  +++ D  E
Sbjct: 24  EDNIRDTLREVRKALLEADVALPVVKEFVEQVKEKALGQEVLQSLNPGQAFVKIVND--E 81

Query: 91  LIHKM------LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVM 143
           L+H M      L   +KP        P +IL+ G+ G GKTT + KL++ + +    KVM
Sbjct: 82  LVHTMGDANDALDLATKP--------PAIILMAGLQGAGKTTSVAKLARFLQEREKKKVM 133

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           + + D +R AAI+QLK  A     +F  S    D   +A  A ++A+ + +DVLI+DTAG
Sbjct: 134 VVSADVYRPAAIEQLKTLAGEVETNFFPSTGDQDPVDIANAALEEARRRYMDVLIVDTAG 193

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RLH +  +M+ I ++   +      +P   L V+DA TGQ+A    + F+     TG+I+
Sbjct: 194 RLHVDEDMMSEIKRLHGAI------SPVETLFVVDAMTGQDAANTAQAFNEALPLTGVIL 247

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TK DG +RGG  + +      P+ F+G+GE  + LEPF     ++ I G  D
Sbjct: 248 TKADGDSRGGAALSVRQLTGKPIKFIGMGEKTDALEPFHPDRIASRILGMGD 299


>gi|189346909|ref|YP_001943438.1| signal recognition particle protein [Chlorobium limicola DSM 245]
 gi|189341056|gb|ACD90459.1| signal recognition particle protein [Chlorobium limicola DSM 245]
          Length = 449

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 139/268 (51%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   VA+K+VE++  K   ++V       Q ++  V++ + +++   +KP N   
Sbjct: 38  LLSADVNYKVAKKLVEDIREKSLGEEVIKSVSPAQMIVKIVNDELTELMGGENKPLNLSP 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
              P +I+V G+ G GKTT   KL++++   G   +L A D +R AAIDQLK   ++   
Sbjct: 98  KKLPAIIMVAGLQGSGKTTFCAKLARRLKKNGKNPLLVAADVYRPAAIDQLKTLGEQVEV 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                E   DA     +  + A+A   DVLI+DTAGRL  +  +MA    +   LK    
Sbjct: 158 PVFSIE-EPDAMKAVMQGLEAARAGAKDVLIVDTAGRLQIDEKMMAEAEAIKNALK---- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+  GQ A+     F+      G+++TK+DG ARGG  + I    + P+ 
Sbjct: 213 --PDELLFVVDSMMGQEAVNTAREFNERLDFDGVVLTKLDGDARGGAALSIRQVVEKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+ +GE ++DL+ F  +  +  I G  D
Sbjct: 271 FISIGEKVDDLDLFYPERMAQRILGMGD 298


>gi|302389629|ref|YP_003825450.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermosediminibacter oceani DSM 16646]
 gi|302200257|gb|ADL07827.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermosediminibacter oceani DSM 16646]
          Length = 446

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 144/269 (53%), Gaps = 15/269 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  ++++  +   ++V       Q+V+  V++ + K++ P     N   
Sbjct: 39  LLEADVNYKVVKDFIQKVTERAVGQEVLESLTPAQQVIKIVNDELTKLMGPKEARLNISP 98

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S + +V+++VG+ G GKTT  GKL   +S  G + +L A D +R AAI QL++  ++   
Sbjct: 99  S-KVNVVMMVGLQGSGKTTTSGKLGLYLSKKGKRPLLVAADIYRPAAIKQLQVVGEKIGL 157

Query: 168 D-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             F   E   +   ++  A + A     DV+IIDTAGRLH +  LM    ++I +    D
Sbjct: 158 PVFTMGE--QNPVNISKAAVEYASRHNNDVVIIDTAGRLHVDDELMQ---ELINIK---D 209

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  +L V+D+ TGQ+A+   E FH     TGLI+TK+DG  RGG  + I      P+
Sbjct: 210 AVNPDEILLVVDSMTGQDAVNVAETFHNKLQLTGLILTKLDGDTRGGAALSIKAVTGCPI 269

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE + DLEPF  +  ++ I G  D
Sbjct: 270 KFVGMGEKLTDLEPFYPERMASRILGMGD 298


>gi|307353992|ref|YP_003895043.1| signal recognition particle-docking protein FtsY [Methanoplanus
           petrolearius DSM 11571]
 gi|307157225|gb|ADN36605.1| signal recognition particle-docking protein FtsY [Methanoplanus
           petrolearius DSM 11571]
          Length = 361

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 111/196 (56%), Gaps = 6/196 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           D   +P  +L  GVNG GKTT I K++  +   G  V++ +GDTFR+ A  Q+K  ADR 
Sbjct: 159 DSHEKPVKVLFTGVNGAGKTTTIAKVAFYLKSKGYSVVIGSGDTFRAGANQQMKTHADRI 218

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +  + G+D +A+ ++    A+A  +DV++ DTAGR HN   LM  + K+ RV+   
Sbjct: 219 GVKVISHQEGADPSAVLFDTVNYAKAHNIDVVLADTAGRFHNKGNLMKQLEKIRRVMN-- 276

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  V  V +A  G +A+ + E F++  GT  +++TK D   +GG  I I  T   P
Sbjct: 277 ----PDIVAYVDEAVAGNDAVIRAEEFNSAVGTDVVVLTKADMDTKGGAAISIAHTIGKP 332

Query: 286 VYFLGVGEGINDLEPF 301
           + FLG+G+G +D+ PF
Sbjct: 333 LMFLGMGQGYDDIVPF 348


>gi|296241780|ref|YP_003649267.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermosphaera aggregans DSM 11486]
 gi|296094364|gb|ADG90315.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermosphaera aggregans DSM 11486]
          Length = 448

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/299 (33%), Positives = 150/299 (50%), Gaps = 18/299 (6%)

Query: 28  LKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVA----QKIVEELLTKRYAKDVS 80
           LKE I     S + ++ V E ++DL   L++SD+ + +A    +KI E  LT+     VS
Sbjct: 8   LKESIAKFFRSEKYEEAVNEFIKDLQKELVKSDVNLNLAFEITKKIKERALTQEPPVGVS 67

Query: 81  VQR-VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
            +   L  V E + K+L   SKP +   + +P +I++VG+ G GKTT   KL+      G
Sbjct: 68  RKEWFLSIVYEELVKLLGGDSKP-SIKPARKPWIIMLVGLQGSGKTTTAAKLAYFYKLEG 126

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV L A DTFR AA DQL+   ++            DA  +A    K    K  +V+II
Sbjct: 127 YKVGLVAADTFRPAAYDQLRQLGEQIGVPVYGDPSIEDAVEIASRGVKYFVEKGFEVVII 186

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGR H    L+  +  +   +K      P  ++ V+D + GQ A    + FH      
Sbjct: 187 DTAGRHHKEEDLLEEMRLISSSVK------PDEIILVIDGSIGQQAYNIAKKFHETTPIG 240

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            +I+TK+DGTA+GGG +  V     P+ F+G+GE + D E F     S ++   L YG+
Sbjct: 241 SIIVTKLDGTAKGGGALSAVAATGAPIKFVGLGEKVEDFEVFKP---SKLVGRVLGYGD 296


>gi|117621132|ref|YP_855207.1| signal recognition particle protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562539|gb|ABK39487.1| signal recognition particle protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 458

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 159/307 (51%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72
           F + + +L   + ++    RL ++ ++E L ++   L+ +D+ + V +  V    E  + 
Sbjct: 2   FENLTERLSRTLRNVSGRGRLTEENIKETLREVRMALLEADVALPVVRDFVARVKERAVG 61

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIG 129
           +  AK +S  +      +++H  L+ +    N   +     P +IL+ G+ G GKTT +G
Sbjct: 62  QEVAKSLSPGQAFI---KIVHGELVSVMGEANEQLNLAAQPPAIILMAGLQGAGKTTTVG 118

Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + + +  KV++ + D +R AAI QL+  A+    DF  S+       +A  A  Q
Sbjct: 119 KLAKLLKERSKKKVLVVSADVYRPAAIKQLETLANDIGVDFFPSDASQKPVDIANAAIDQ 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+I+DTAGRLH +S +M  I  +   +K      P   L V+DA TGQ+A   
Sbjct: 179 ARKKFYDVVIVDTAGRLHVDSDMMDEIKHLHATIK------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+I+TK DG ARGG  + +      PV F+G+GE  + LEPF     ++
Sbjct: 233 AKAFNEALPLTGVILTKADGDARGGAALSVRHITGKPVKFIGMGEKTDALEPFHPDRLAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|71279264|ref|YP_270728.1| signal recognition particle protein [Colwellia psychrerythraea 34H]
 gi|71145004|gb|AAZ25477.1| signal recognition particle protein [Colwellia psychrerythraea 34H]
          Length = 463

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 156/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V ++ + ++  K   
Sbjct: 2   FDNLSERLSKTLKNISGRGRLTEDNIKETLREVRMALLEADVALPVIREFIAKVKEKAVG 61

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLS 132
            DVS       +  +++ K L       N     R   P V+L+ G+ G GKTT + KL+
Sbjct: 62  TDVSKSLTPGQIFVKIVQKELESAMGEVNEGLDLRAAPPAVVLMAGLQGAGKTTSVAKLA 121

Query: 133 KKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K +++    KV++ + D +R AAI QL+  A+  S  F  S+I      +A  A   A+ 
Sbjct: 122 KFLTEREKKKVLVVSADVYRPAAIKQLETLAEEISVGFFPSDIKQKPIDIANAAIDHAKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQ 248
              DVLI+DTAGRLH +  +MA I ++         HA   P   L  +DA TGQ+A   
Sbjct: 182 NFYDVLIVDTAGRLHIDENMMAEIQQL---------HAAINPIETLFTVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+I+TK DG ARGG  + I      P+ F+GVGE I  LEPF     ++
Sbjct: 233 AKAFNDALPLTGIILTKTDGDARGGAALSIRHITGKPIKFMGVGEKIEALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|313901971|ref|ZP_07835387.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467760|gb|EFR63258.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermaerobacter subterraneus DSM 13965]
          Length = 445

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 114/205 (55%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+++VG+ G GKTT   KL++ ++  G + +L A D +R AA++QL     +      
Sbjct: 101 PAVVMLVGLQGSGKTTTAAKLARLLTRQGRQPLLVAADVYRPAAVEQLVTLGQQVQVPVY 160

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 D   +A E   +A+ +  DV++IDTAGRLH +  LM  + ++ + +      AP
Sbjct: 161 APGTDRDPVDIAREGVAEARRRGRDVVLIDTAGRLHIDDALMEELERIRQAV------AP 214

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+DA TGQ+A+   E FH   G  G+I+TK+DG ARGG  + +      P+ F G
Sbjct: 215 REILLVVDAMTGQDAVNVAETFHRRLGIDGVILTKLDGDARGGAALSVRAVTGRPIKFAG 274

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           +GE ++ LEPF  +  ++ I G  D
Sbjct: 275 LGERVDQLEPFHPERMASRILGMGD 299


>gi|5912310|emb|CAB56107.1| cell division protein [Rickettsia typhi]
          Length = 136

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 95/136 (69%), Gaps = 2/136 (1%)

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++AY A +++  + +D+L IDTAGRLHNN  LM  + K+++V+K+LD +AP HS+L ++
Sbjct: 2   ASVAYRAIQESIKQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSIL-II 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   Q+E F+ V   TGLI+TK+DG+A+ G L+  V    +P+YF+G+GE I D
Sbjct: 61  DAVTGQNTYNQIEYFNDVTNLTGLIITKLDGSAKAGVLVGAVQKFNLPIYFIGIGEQIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DFS  + G 
Sbjct: 121 LKIFNRHDFSRSLVGL 136


>gi|5912301|emb|CAB56084.1| cell division protein [Rickettsia prowazekii]
 gi|5912305|emb|CAB56088.1| cell division protein [Rickettsia prowazekii]
          Length = 136

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 95/136 (69%), Gaps = 2/136 (1%)

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++AY A +++  + +D+L IDTAGRLHNN  LM  + K+++V+K+LD +AP HS+L ++
Sbjct: 2   ASVAYRAIEESIKQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSIL-II 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   Q+E F+ V   TGLI+TK+DG+A+ G L+  V    +PVYF+G+GE I D
Sbjct: 61  DAITGQNTYNQIEYFNDVTNLTGLIVTKLDGSAKAGVLVGAVQKFNLPVYFIGIGEKIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DFS  + G 
Sbjct: 121 LKIFNRHDFSRSLVGL 136


>gi|251793274|ref|YP_003008002.1| signal recognition particle protein [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534669|gb|ACS97915.1| signal recognition particle protein [Aggregatibacter aphrophilus
           NJ8700]
          Length = 459

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 163/310 (52%), Gaps = 27/310 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V +  + ++  K  A
Sbjct: 2   FENLSDRLAKTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  IGVEVNKSLTPGQEFIKIVQAELEAAMGEANESLNL-ATQPPAVILLAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + +    KV++ + D +R AAI QL+  A   + DF  S++  +   +A  A  +
Sbjct: 119 KLAKFLRERHKKKVLVVSADVYRPAAIKQLETLAQAVNVDFFPSDVKQNPVDIAKTALAE 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245
           A+ K  DVLI+DTAGRLH +       G+M+  +K++  HA   P   L  +DA TGQ+A
Sbjct: 179 AKLKFYDVLIVDTAGRLHVD-------GEMMNEIKQI--HAALNPIETLFTVDAMTGQDA 229

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
               + F+     +G+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF    
Sbjct: 230 ANTAKAFNEALPLSGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDR 289

Query: 306 FSAVITGCLD 315
            ++ I G  D
Sbjct: 290 VASRILGMGD 299


>gi|171185970|ref|YP_001794889.1| GTP-binding signal recognition particle [Thermoproteus neutrophilus
           V24Sta]
 gi|226734219|sp|B1Y9L4|SRP54_THENV RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|170935182|gb|ACB40443.1| GTP-binding signal recognition particle SRP54 G- domain
           [Thermoproteus neutrophilus V24Sta]
          Length = 433

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/232 (36%), Positives = 124/232 (53%), Gaps = 12/232 (5%)

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           VLY+  EL+   L+   +P  +  + +P+V+L++GV G GKTT   KL+K +   G KV 
Sbjct: 76  VLYE--ELVK--LLGGEQPPEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKLLVKRGYKVG 131

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L   DT R AA DQL+  A++    F     G DA  +A    +    K +DV+I+DTAG
Sbjct: 132 LVETDTVRPAAFDQLRQLAEKIGVPFYGERDGKDAVEIARRGVQNL--KNLDVVIVDTAG 189

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R  N   L+  +  +   +      +P  V+ V+DAT G+ A  Q E F        +I+
Sbjct: 190 RHRNEEALLQEVKAIYEAV------SPDEVVLVIDATVGKLAAAQAEAFMRYLPIHSVII 243

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TKMD TARGGG +  V      V F+GVGE +++LE F+ + F A + G  D
Sbjct: 244 TKMDSTARGGGALAAVAKTGAKVKFIGVGEDVDELEMFIPRKFVARVLGMGD 295


>gi|116490535|ref|YP_810079.1| signal recognition particle subunit FFH/SRP54 (srp54) [Oenococcus
           oeni PSU-1]
 gi|290889938|ref|ZP_06553024.1| hypothetical protein AWRIB429_0414 [Oenococcus oeni AWRIB429]
 gi|116091260|gb|ABJ56414.1| signal recognition particle subunit FFH/SRP54 (srp54) [Oenococcus
           oeni PSU-1]
 gi|290480380|gb|EFD89018.1| hypothetical protein AWRIB429_0414 [Oenococcus oeni AWRIB429]
          Length = 507

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 148/287 (51%), Gaps = 16/287 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           +S   LD+ +RE +   L+ +D+ +  A+  ++++  K     V       ++V+  V++
Sbjct: 23  VSETDLDETLRE-IRLALLEADVNLKTARNFIKQVRDKALGAKVLEGLNPSEQVVKIVND 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDT 149
            +  M+   + P N   S  P VI++ G+ G GKTT + KL+ ++ D    + +L A D 
Sbjct: 82  QLTAMMGEKAVPLNKS-SKIPTVIMMAGLQGAGKTTTVAKLANRLKDENHARPLLIAADV 140

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK   D+ S       +G +   +  +  KQA+  K D + IDTAGRL  + 
Sbjct: 141 YRPAAIEQLKSLGDQLSIPVFDEGVGENPRKIVEDGLKQARENKNDYVFIDTAGRLQIDQ 200

Query: 210 ILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           +LM       + LK ++  A P  +L  +DA TGQNA      F+   G TG+++TK+DG
Sbjct: 201 VLM-------QELKDIEKMAEPDEILLTVDAMTGQNATETARGFNDALGITGVVLTKLDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             RGG  + I      P+ F+G GE + DL+ F     ++ I G  D
Sbjct: 254 DTRGGAALSIREVTGKPIKFVGEGEKVTDLDVFYPDRMASRILGMGD 300


>gi|123969017|ref|YP_001009875.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. AS9601]
 gi|123199127|gb|ABM70768.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. AS9601]
          Length = 498

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 150/286 (52%), Gaps = 14/286 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           IS   ++D ++E ++  L+ +D+ ++V ++ + ++  K   ++V       Q+ +  V++
Sbjct: 22  ISENNINDALKE-VKRALLDADVSLSVVKEFISDVKDKAIGEEVVRGVNPGQKFIEVVNK 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  ++   + P N +    P VIL+ G+ G GKTT  GKL   + +   KV+L A D +
Sbjct: 81  ELINIMGNENSPLNEN-EKSPTVILMAGLQGAGKTTATGKLGLYLKEKDKKVLLVAADIY 139

Query: 151 RSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           R AA++QLK    +   + F   E  S    +A EA   A     + +IIDTAGRL  + 
Sbjct: 140 RPAAVEQLKTLGSQYELEVFSAKEKNSKPEEIAKEALNFANENDFNSIIIDTAGRLQIDD 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +M+   +M+R+    +   P  +L V+D+  GQ A    + FH   G TG I+TK+DG 
Sbjct: 200 SMMS---EMVRIK---EVSNPDEILLVVDSMIGQEAADLTKSFHEKVGITGAILTKLDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + I      P+ F+GVGE I  L+PF  +  ++ I G  D
Sbjct: 254 SRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRILGMGD 299


>gi|311693648|gb|ADP96521.1| signal recognition particle protein [marine bacterium HP15]
          Length = 463

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 151/290 (52%), Gaps = 20/290 (6%)

Query: 37  SSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD------ 87
            +R  DD +++ L ++   L+ +D+ + V +  VE +  ++ A    VQR L        
Sbjct: 19  QARLTDDNIKDTLREVRMALLEADVALPVVKDFVEGV--RKRAIGQEVQRSLTPGQVFVK 76

Query: 88  -VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLA 145
            V + + +++   ++  N +    P V+++ G+ G GKTT + KLS+ + +   K V++ 
Sbjct: 77  VVQQELERVMGEGNESLNLNVQP-PAVVMMAGLQGAGKTTTVAKLSRFLKERQKKSVLVV 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           + D +R AAI QL+  A     +F  S    D   +A  A   A+ K +DV+I+DTAGRL
Sbjct: 136 SADVYRPAAIRQLETLAGEVGVEFFPSTADQDPVDIAEGAIAAARKKHIDVVILDTAGRL 195

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H +  +M  IG++ + +       P   L V+DA TGQ+A    + F+     TG+++TK
Sbjct: 196 HVDEQMMGEIGRLHKAVN------PVETLFVVDAMTGQDAANTAKAFNDALPLTGVVLTK 249

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 250 TDGDARGGAALSVRHITGKPIKFLGVGEKSDALEPFYPDRVASRILGMGD 299


>gi|257454123|ref|ZP_05619396.1| signal recognition particle protein [Enhydrobacter aerosaccus SK60]
 gi|257448451|gb|EEV23421.1| signal recognition particle protein [Enhydrobacter aerosaccus SK60]
          Length = 488

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 157/303 (51%), Gaps = 23/303 (7%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--- 79
           STSL+   G T  ++   + D +RE +   L+ +D+ + V +  V  +  K   ++V   
Sbjct: 10  STSLRSISG-TGQLTEDNIKDTLRE-VRMALLEADVALPVTRDFVSRVKDKALGQEVLKE 67

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSK 133
                +  +++YD  EL   M    S   + + + +P V+ L+ G+ G GKTT  GKL+K
Sbjct: 68  LAPGQAFVKIVYD--ELTEMMG---SANQSLEMTGKPPVVYLLAGLQGAGKTTTAGKLAK 122

Query: 134 KMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            + +    KVML + D +R AAI QL+  A++  A FV S    +   +A  A +QA+ +
Sbjct: 123 YLQERQKKKVMLVSADVYRPAAIKQLEQVAEQVKASFVPSSADQNPIDIAKRAIEQAKVQ 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D+LIIDTAGRLH +  +M  I  +   +       P   L V+D+ TGQ+A    + F
Sbjct: 183 FQDILIIDTAGRLHIDEAMMDEIKALTAAV------TPSETLFVVDSMTGQDAANTAKAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     TG+I+TK DG ARGG  + +      P+ FLG GE ++ LEPF  +  +  I G
Sbjct: 237 NDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLDALEPFHPERVAQRILG 296

Query: 313 CLD 315
             D
Sbjct: 297 MGD 299


>gi|29653794|ref|NP_819486.1| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii
           RSA 493]
 gi|29541057|gb|AAO90000.1| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii
           RSA 493]
          Length = 461

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 159/289 (55%), Gaps = 22/289 (7%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           R  ++ ++  L D+   LI +D+ + V +  +E +  K   ++V        ++ +V+ D
Sbjct: 21  RLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALGQEVIGNVRPGEALVKVVQD 80

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146
             EL H +   L +  N + +  P VI++ G+ G GKTT + KL++ + +   K VM+A+
Sbjct: 81  --ELTHLLGDELVE-INLN-AQPPIVIVMAGLQGSGKTTTVAKLARWLLEIQKKSVMVAS 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AAI QL+  A + +A F  ++       +A  A KQA+ + +DVLI+DTAGRLH
Sbjct: 137 ADVYRPAAIQQLETLASQINAIFFPTQADQKPVEIAKAALKQAEKQFMDVLILDTAGRLH 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +++LM  + K I      D   P  +L V+D+  GQ+A    + F+     TG+I+TK+
Sbjct: 197 IDNVLMEEM-KAIS-----DAVTPTEILLVVDSMMGQDAANVAKSFNDTLPLTGVILTKL 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + + +  + P+ F+GVGE I+ LEPF     ++ I G  D
Sbjct: 251 DGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRILGMGD 299


>gi|225440855|ref|XP_002276439.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 517

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 158/309 (51%), Gaps = 23/309 (7%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----- 70
           +LT G  +   KLK    ++++   + + +R+ +   L+ +D+ + V ++ V+ +     
Sbjct: 33  QLTSGLEAAWTKLKG--EEVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVQAVSEQAV 89

Query: 71  ---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
              L +    D  + ++++D  EL+  M   +S+     F+   P VIL+ G+ GVGKTT
Sbjct: 90  GVGLIRGVKPDQQLVKIVHD--ELVKLMGGEVSE---LVFAKSGPTVILLAGLQGVGKTT 144

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           V  KL+  +   G   ML AGD +R AAIDQL I  ++       +      + +A +  
Sbjct: 145 VCAKLAFYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVDVPVYTAGTEVKPSQIAKQGL 204

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ K +DV+I+DTAGRL  +  +M  +  + R +       P  VL V+DA TGQ A 
Sbjct: 205 EEARKKNIDVVIVDTAGRLQIDKAMMDELKDVKRAIN------PTEVLLVVDAMTGQEAA 258

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF     
Sbjct: 259 ALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRM 318

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 319 AGRILGMGD 327


>gi|120555223|ref|YP_959574.1| signal recognition particle protein [Marinobacter aquaeolei VT8]
 gi|120325072|gb|ABM19387.1| signal recognition particle subunit FFH/SRP54 (srp54) [Marinobacter
           aquaeolei VT8]
          Length = 485

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 164/322 (50%), Gaps = 22/322 (6%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVA 61
           +     S +RK +  F +   +L   +  I    RL DD +++ L ++   L+ +D+ + 
Sbjct: 17  ICVNKFSGVRK-SNMFENLQDRLSGSLRKISGQARLTDDNIKDTLREVRMALLEADVALP 75

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVI 114
           V +  +E +  +   ++V  QR L         V + + +++   ++  N   +  P VI
Sbjct: 76  VVKAFIEGVRERAIGQEV--QRSLTPGQVFVKVVQQELERVMGEGNESLNL-ATRPPAVI 132

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ++ G+ G GKTT + KLS+ + +   K V++ + D +R AAI QL+  A     +F  S 
Sbjct: 133 MMAGLQGAGKTTTVAKLSRFLKEREKKSVLVVSADIYRPAAIRQLETLAGEVGVEFFPST 192

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D   +A  A + A+ K +DV+I+DTAGRLH +  +M  IG++ + +       P   
Sbjct: 193 TEQDPVDIANGAIEAARRKHIDVVILDTAGRLHVDEQMMGEIGRLHKAVN------PVET 246

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+DA TGQ+A    + F+     TG+++TK DG ARGG  + +      P+ FLG+GE
Sbjct: 247 LFVVDAMTGQDAANTAKAFNDALPLTGVVLTKTDGDARGGAALSVRHITGKPIKFLGIGE 306

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
             + LEPF     ++ I G  D
Sbjct: 307 KSDALEPFYPDRVASRILGMGD 328


>gi|160947510|ref|ZP_02094677.1| hypothetical protein PEPMIC_01444 [Parvimonas micra ATCC 33270]
 gi|158446644|gb|EDP23639.1| hypothetical protein PEPMIC_01444 [Parvimonas micra ATCC 33270]
          Length = 450

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 158/305 (51%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + S KL+  +  +     +S + +D  +RE ++  L+ SD+   V ++ +  +  +  
Sbjct: 6   FENLSEKLQGALNKLRGKGKLSEKDVDLAMRE-VKLALLESDVNFKVVKQFISNVKERAI 64

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+V+  V+E +  ++    +    D S+ P VI++ G+ G GKTT  GK
Sbjct: 65  GKEVMESLTPAQQVIKIVNEELTALMGKKEEKIQID-SNPPTVIMLCGLQGAGKTTHAGK 123

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++       + +L A D +R AAI QL++            +   D   +A E+ K A 
Sbjct: 124 LARYFLKQNKRPLLVACDIYRPAAIKQLQVVGKSVDVPVFTIDDCKDVTKIANESIKFAN 183

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   D++I+DTAGRLH + +LM  + K I+        +P  +L V+D+ TGQ+A+   E
Sbjct: 184 SNSKDIVILDTAGRLHIDDVLMEEL-KSIK-----SSVSPIEILLVVDSMTGQDAVNVAE 237

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+IMTK+DG ARGG  + I      P+ F+GVGE ++DLE F     ++ I
Sbjct: 238 SFNNELDITGVIMTKLDGDARGGAALSIKAITGKPIKFIGVGEKLDDLEQFYPDRMASRI 297

Query: 311 TGCLD 315
            G  D
Sbjct: 298 LGMGD 302


>gi|87311715|ref|ZP_01093831.1| signal recognition particle protein [Blastopirellula marina DSM
           3645]
 gi|87285609|gb|EAQ77527.1| signal recognition particle protein [Blastopirellula marina DSM
           3645]
          Length = 481

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 152/300 (50%), Gaps = 20/300 (6%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELLTKRYAK 77
           A  SL+ K  +TD      + DG+R  +E+ +I +D+   V Q    ++ EE + ++  K
Sbjct: 12  ALKSLRGKGKLTDA----NMRDGLRM-VEEAMIEADVAYPVVQDFMARVSEEAMGQKVLK 66

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV--ILVVGVNGVGKTTVIGKLSKKM 135
            ++  + L  V   +H+ L+ L  P +        V  +++ G+ G GKTT  GKL++ +
Sbjct: 67  SLNPDQQLVGV---VHEQLIQLLGPVDPSLHLEKDVTVLMMCGLQGAGKTTTCGKLARLI 123

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G K +L A D  R AA+ QL +  +   A     E  SD  A+   A K A+   ++
Sbjct: 124 GTEGKKALLVAADLQRPAAVQQLHVVGESVGAKVYSEENASDPIAVCQNAVKFARENGIN 183

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+I+DTAGRL  +  LM  +  + R +       P     V+D  TGQ+A+   + F+  
Sbjct: 184 VVILDTAGRLAIDEELMEQLKTIDRKI------GPDQCFLVVDGMTGQDAVNSAKAFNDA 237

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               G+IMTK+DG ARGG L+ +     +P+ F+G+ E ++ LEPF A   +  I G  D
Sbjct: 238 LELDGVIMTKLDGDARGGALLSVKHVTGVPIKFIGISEHMDGLEPFYADRMAGRILGMGD 297


>gi|256810320|ref|YP_003127689.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793520|gb|ACV24189.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus fervens AG86]
          Length = 451

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 152/285 (53%), Gaps = 18/285 (6%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIH 93
           ++L   V ++++  LI++D+ V +  K+ +E+    L +   K +S  + ++  V E + 
Sbjct: 24  KKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALKEETPKGLSKKEHIIKIVYEELV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K+L   +K        + +VIL+VG+ G GKTT   KL++ +   GLK  L A DT+R A
Sbjct: 84  KLLGEEAKKLELS-PKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA 142

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSIL 211
           A +QLK  A++        E  + +     E  K+   + KK DVLIIDTAGR      L
Sbjct: 143 AYEQLKQLAEKIHVPLYGDETKTKSPV---EIVKEGMEKFKKADVLIIDTAGRHKEERGL 199

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTKMDGTA 270
           +  + ++  V        P  ++ V+D T GQ A  Q + F    G  G +I+TK+DG+A
Sbjct: 200 LEEMKQIKEVTN------PDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSA 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GGG +  V     P+ F+G+GEGI+DLEPF  K F + + G  D
Sbjct: 254 KGGGALSAVAETGAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGD 298


>gi|227329617|ref|ZP_03833641.1| signal recognition particle protein [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 453

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 117/209 (55%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A++  
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++     A+   A + A+ K  DVL++DTAGRLH +  +M  I ++   +K   
Sbjct: 157 VDFFPSDVQEKPLAIVQRALQHAKLKFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA TGQ+A    + F+     TG+I+TK+DG ARGG  + I      P+
Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVILTKIDGDARGGAALSIRHITGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLGVGE    LEPF  +  ++ I G  D
Sbjct: 271 KFLGVGEKTEALEPFYPERVASRILGMGD 299


>gi|268593126|ref|ZP_06127347.1| signal recognition particle protein [Providencia rettgeri DSM 1131]
 gi|291311398|gb|EFE51851.1| signal recognition particle protein [Providencia rettgeri DSM 1131]
          Length = 453

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 164/307 (53%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL D+ ++E L ++   L+ +D+ + V ++ ++++      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTDENIKETLREVRMALLEADVALPVVREFIQKVKENAVG 61

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIG 129
           +DV+  + L    E I  +   L++    D +H+       P V+L+ G+ G GKTT + 
Sbjct: 62  QDVN--KSLTPGQEFIKIVQNELTRAM-GDENHQLNLSAQPPAVVLMAGLQGAGKTTSVA 118

Query: 130 KLSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL K + +   K +L  + D +R AAI QL+  A+    DF  SE+    A +  +A K 
Sbjct: 119 KLGKLLKEKQKKKVLVVSADVYRPAAIKQLETLAESVGIDFFPSEVQEKPAVIVQKALKH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           AQ +  DVL++DTAGRLH +  +M  I ++ R++K      P   L V+DA TGQ+A   
Sbjct: 179 AQLQFYDVLLVDTAGRLHVDEAMMEEIQEVHRIIK------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF  +  ++
Sbjct: 233 AKAFNEALPLTGVVLTKVDGDARGGAALSIRAITGKPIKFLGVGEKTDALEPFHPERVAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|157148123|ref|YP_001455442.1| signal recognition particle protein [Citrobacter koseri ATCC
           BAA-895]
 gi|157085328|gb|ABV15006.1| hypothetical protein CKO_03933 [Citrobacter koseri ATCC BAA-895]
          Length = 453

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A +   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVDVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|254805664|ref|YP_003083885.1| signal recognition particle protein [Neisseria meningitidis
           alpha14]
 gi|254669206|emb|CBA07997.1| signal recognition particle protein [Neisseria meningitidis
           alpha14]
          Length = 456

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   S  P ++L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVSP-PAIVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGIVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|297740127|emb|CBI30309.3| unnamed protein product [Vitis vinifera]
          Length = 567

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 158/309 (51%), Gaps = 23/309 (7%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----- 70
           +LT G  +   KLK    ++++   + + +R+ +   L+ +D+ + V ++ V+ +     
Sbjct: 83  QLTSGLEAAWTKLKG--EEVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVQAVSEQAV 139

Query: 71  ---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
              L +    D  + ++++D  EL+  M   +S+     F+   P VIL+ G+ GVGKTT
Sbjct: 140 GVGLIRGVKPDQQLVKIVHD--ELVKLMGGEVSE---LVFAKSGPTVILLAGLQGVGKTT 194

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           V  KL+  +   G   ML AGD +R AAIDQL I  ++       +      + +A +  
Sbjct: 195 VCAKLAFYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVDVPVYTAGTEVKPSQIAKQGL 254

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ K +DV+I+DTAGRL  +  +M  +  + R +       P  VL V+DA TGQ A 
Sbjct: 255 EEARKKNIDVVIVDTAGRLQIDKAMMDELKDVKRAIN------PTEVLLVVDAMTGQEAA 308

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF     
Sbjct: 309 ALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRM 368

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 369 AGRILGMGD 377


>gi|332976619|gb|EGK13460.1| signal recognition particle protein [Desmospora sp. 8437]
          Length = 449

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 140/268 (52%), Gaps = 13/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  V ++  +   ++V       Q+V+  V+E +  ++    +  N   
Sbjct: 39  LLEADVNYKVVKDFVSKVRERAVGQEVLKSLTPGQQVIKVVNEELSSLMGGTQEKLN--L 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           + +P VIL+VG+ G GKTT  GKL + +       +L AGD +R AAI QL++  D+   
Sbjct: 97  TSKPSVILMVGLQGAGKTTTTGKLGRFLKKQNRHPLLVAGDVYRPAAIRQLEVLGDQVEL 156

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                        +A +   +A+ +  D ++IDTAGRLH +  +M  + K IR     + 
Sbjct: 157 PVFSMGDQESPVRIAVDGVAKAKEEGHDTVLIDTAGRLHIDETMMGEL-KAIR-----EK 210

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+DA TGQ+A+   E F+   G TG+I+TK+DG  RGG  + +      PV 
Sbjct: 211 VQPDEILLVVDAMTGQDAVNVAESFNRELGLTGVILTKLDGDTRGGAALSVKSVTDCPVK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G+GE ++ LEPF  +  ++ I G  D
Sbjct: 271 FVGMGEKVDALEPFHPERMASRILGMGD 298


>gi|229822802|ref|ZP_04448872.1| hypothetical protein GCWU000282_00091 [Catonella morbi ATCC 51271]
 gi|229787615|gb|EEP23729.1| hypothetical protein GCWU000282_00091 [Catonella morbi ATCC 51271]
          Length = 491

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F   S +L+  I+ I     IS   L   +RE +   L+ +D+   V +  V+ +  +  
Sbjct: 3   FEGLSERLQNAISGIGAGGTISEADLRQMMRE-IRLALLEADVNFQVVKSFVKTVNERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++     P N+  +  P +I++ G+ G GKTT +GK
Sbjct: 62  GSDVLASLSPAQQVVKIVDEELTALMGGEQVPLNF-ATQPPTIIMMAGLQGAGKTTTVGK 120

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187
           L+K +   G K  +L AGD +R AAI QL+    +   D     +GSD +   +A +A  
Sbjct: 121 LAKYVQAQGKKRPLLVAGDIYRPAAIAQLQTIGQQLGFDVFS--LGSDVSPVEIARQAVA 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+ +  DV++IDTAGRLH +  LM  + ++   +       PH +L  +DA TGQ+A+ 
Sbjct: 179 QARIQGNDVVLIDTAGRLHVDETLMEELRQIKAAVN------PHEILLTVDAMTGQDAVN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+I+TK+DG  RGG  + I      P+ F G GE ++ LEPF     S
Sbjct: 233 VAKAFNDSLDITGVIITKLDGDTRGGAALSIRSIIDRPIKFTGQGEKLDALEPFYPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|156932848|ref|YP_001436764.1| signal recognition particle protein [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531102|gb|ABU75928.1| hypothetical protein ESA_00645 [Cronobacter sakazakii ATCC BAA-894]
          Length = 453

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D ++E L ++   L+ +D+ + V +  +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQSLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A +   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|210622533|ref|ZP_03293226.1| hypothetical protein CLOHIR_01174 [Clostridium hiranonis DSM 13275]
 gi|210154168|gb|EEA85174.1| hypothetical protein CLOHIR_01174 [Clostridium hiranonis DSM 13275]
          Length = 453

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 111/208 (53%), Gaps = 6/208 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P VI++VG+ G GKTT  GKL       G K +L A D +R AAI QL++  ++   
Sbjct: 98  SKPPTVIMMVGLQGAGKTTTAGKLGGYFKKQGKKPLLVACDVYRPAAIKQLQVVGEKLDI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    +   +A      AQ    D++IIDTAGRLH + +LM  + K I+   R   
Sbjct: 158 PVFAMGDKENPVNIAKAGLSHAQKNGNDMVIIDTAGRLHVDEVLMEEL-KNIKSEVR--- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             PH +L  +DA TGQ+A+   E F+   G  G+++TK+DG  RGG  + I    K P+ 
Sbjct: 214 --PHEILLTVDAMTGQDAVNVAESFNDALGIDGVVLTKLDGDTRGGAALSIRAVTKKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G+GE + DLEPF     ++ I G  D
Sbjct: 272 FIGMGEKLEDLEPFHPDRMASRILGMGD 299


>gi|149377073|ref|ZP_01894823.1| signal recognition particle protein [Marinobacter algicola DG893]
 gi|149358609|gb|EDM47081.1| signal recognition particle protein [Marinobacter algicola DG893]
          Length = 462

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 150/299 (50%), Gaps = 38/299 (12%)

Query: 37  SSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS------------- 80
            +R  DD ++E L ++   L+ +D+ + V +  +E +  +   ++V              
Sbjct: 19  QARLTDDNIKETLREVRMALLEADVALPVVKAFIEGVRQRAVGQEVQRSLSPGQVFVKVV 78

Query: 81  ---VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
              ++RV+ D +E ++  + P            P VI++ G+ G GKTT + KLS+ + +
Sbjct: 79  QQELERVMGDGNESLNLAVQP------------PAVIMMAGLQGAGKTTTVAKLSRFLKE 126

Query: 138 AGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
              K V++ + D +R AAI QL+  A     +F  S    D   +A  A   A+ K +DV
Sbjct: 127 RQKKSVLVVSADVYRPAAIRQLETLAGEVGVEFFPSSEDQDPVDIANGAMDAARKKHIDV 186

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +I+DTAGRLH +  +M  IG++ + +       P   L V+DA TGQ+A    + F+   
Sbjct: 187 VILDTAGRLHVDEQMMGEIGRLHKAVN------PVETLFVVDAMTGQDAANTAKAFNDAL 240

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             TG+++TK DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 241 PLTGVVLTKTDGDARGGAALSVRHITGKPIKFLGVGEKSDALEPFHPDRVASRILGMGD 299


>gi|218555190|ref|YP_002388103.1| signal recognition particle protein [Escherichia coli IAI1]
 gi|218361958|emb|CAQ99559.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli IAI1]
          Length = 453

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTCVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|325203414|gb|ADY98867.1| signal recognition particle protein [Neisseria meningitidis
           M01-240355]
          Length = 456

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   S  P ++L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGRENKTLDLSVSP-PAIVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|220928159|ref|YP_002505068.1| signal recognition particle protein [Clostridium cellulolyticum
           H10]
 gi|219998487|gb|ACL75088.1| signal recognition particle protein [Clostridium cellulolyticum
           H10]
          Length = 448

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F   S KL++ I  I     +S + + D +RE ++  L+ +D+   V ++ + ++  +  
Sbjct: 4   FEGLSGKLQDTIKKIRGQGRVSEKDVKDMMRE-IKLALLEADVNFKVVKEFISKISERAV 62

Query: 76  AKDVSVQRVL-YDVSELIHKMLMPL--SKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKL 131
             DV         V +++H+ L+ L   +     F+ +P  V ++ G+ G GKTT  GKL
Sbjct: 63  GADVLESLTPGQQVVKIVHEELIELLGREQSKVTFAPKPPTVFMMAGLQGAGKTTTAGKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL++  ++ +      E   +   +A EA K A+ 
Sbjct: 123 ANLLRKQGKNPLLVACDVYRPAAIKQLQVLGNQLNIPVFTLENNQNPVQIAKEAVKFAEM 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K+ D++I+DTAGRLH +  LM  +  +   +K      PH +L V+D+ TGQ+A+   + 
Sbjct: 183 KQNDLVILDTAGRLHIDEKLMDELLNIKNTVK------PHEILLVVDSMTGQDAVNVSKT 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DG  RGG  + +      P+ F  +GE +ND+EPF     ++ I 
Sbjct: 237 FNEKLGIDGVVLTKLDGDTRGGAALSVKSVTGKPIKFAAMGEKLNDIEPFFPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|313888484|ref|ZP_07822151.1| signal recognition particle protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845513|gb|EFR32907.1| signal recognition particle protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 445

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 162/307 (52%), Gaps = 23/307 (7%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F S S KL+  + ++     +S + +D  +RE ++  L+ +D+   V +  V+ +  +  
Sbjct: 3   FESLSDKLQNTLQNLRGKGKLSEKDIDAAMRE-VKLALLEADVNFRVVKDFVKTVKERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+V+  V+E +  ++   +     DFS +P VI++ G+ G GKTT  GK
Sbjct: 62  GKEVLESLTPGQQVIKIVNEELTSLMG--TSEVKIDFSKKPTVIMMCGLQGAGKTTTSGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQ 188
           L+ K+   G + +L A D +R AAI QL++  +  S D     +G   +   ++  A + 
Sbjct: 120 LANKLKKDGKRPLLVACDVYRPAAIKQLQVVGE--SVDTPVFTMGDKISPVDISKAALEH 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+IIDTAGRLH +  LM  +  +   L+      P  VL VLDA TGQ+A+  
Sbjct: 178 AKKNGNDVVIIDTAGRLHIDEALMKELQDIHEALE------PSEVLLVLDAMTGQDAVNV 231

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F  +   TG+I+TK+DG ARGG  + I     +P+ F+  GE ++++E F     ++
Sbjct: 232 ADTFDDMLKLTGVILTKLDGDARGGAALSIRSVTDVPIKFIASGEKMDNIEVFHPDRMAS 291

Query: 309 VITGCLD 315
            I G  D
Sbjct: 292 RILGMGD 298


>gi|170684039|ref|YP_001744793.1| signal recognition particle protein [Escherichia coli SMS-3-5]
 gi|170521757|gb|ACB19935.1| signal recognition particle protein [Escherichia coli SMS-3-5]
          Length = 453

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALSLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|325973669|ref|YP_004250733.1| signal recognition particle-docking protein FtsY [Mycoplasma suis
           str. Illinois]
 gi|325990112|ref|YP_004249811.1| cell division protein FtsY [Mycoplasma suis KI3806]
 gi|323575197|emb|CBZ40862.1| Cell division protein FtsY [Mycoplasma suis]
 gi|323652271|gb|ADX98353.1| signal recognition particle-docking protein FtsY [Mycoplasma suis
           str. Illinois]
          Length = 317

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 146/272 (53%), Gaps = 15/272 (5%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELI------ 92
           ++ ++  + ++LI+ D  + +A+++  E    L K  + D+SV +    +S LI      
Sbjct: 33  EEKIKSSILEMLIKLDFQLELAKEVTNETIEKLKKLNSIDISVIKENL-ISSLIECYNSK 91

Query: 93  HKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDT 149
           ++    +   FN +  S + +V  +VG NGVGKT+ I KL    K  +   K++L AGDT
Sbjct: 92  NESSKNVEDNFNLNIVSDKTNVFFIVGSNGVGKTSSIAKLVYFLKKENYNKKILLVAGDT 151

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A++QL I A+R + + V         +L Y   K+    + D++I D++GR +NN 
Sbjct: 152 FRAGAVEQLSILAERLNVEIVTPREKETVNSLIYRVLKEMS--RYDLIIFDSSGRQYNNQ 209

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L++ I K  +++ ++    P   L VLD+T G+ +  +V+    +   TG+I+TKMD T
Sbjct: 210 KLISEIQKNFKLVHKMLNRDPEETLLVLDSTLGKFSFEEVKKIFNILPITGIILTKMDHT 269

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            RGG +  +      P+ F+  GE   D++PF
Sbjct: 270 VRGGVIYNLKTEFPTPIKFICYGEKEQDIQPF 301


>gi|293398062|ref|ZP_06642267.1| signal recognition particle protein [Neisseria gonorrhoeae F62]
 gi|291611325|gb|EFF40395.1| signal recognition particle protein [Neisseria gonorrhoeae F62]
          Length = 456

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 152/283 (53%), Gaps = 16/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVSLPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   S  P +IL+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVSP-PAIILMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             I  +  V+       P   L V+DA  GQ+A+   + F+      G+++TKMDG +RG
Sbjct: 203 NEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLNGVVLTKMDGDSRG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 257 GAALSVRHVTGKPIKFIGVGEKINSLEPFHPDRLASRILGMGD 299


>gi|319779087|ref|YP_004130000.1| Signal recognition particle, subunit Ffh SRP54 [Taylorella
           equigenitalis MCE9]
 gi|317109111|gb|ADU91857.1| Signal recognition particle, subunit Ffh SRP54 [Taylorella
           equigenitalis MCE9]
          Length = 471

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 144/287 (50%), Gaps = 25/287 (8%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPL------S 100
           E+   LI +D+ + V +  +EE+ +K   +DV+        +  ++HK L  L       
Sbjct: 33  EIRMALIEADVALPVVKAFIEEVKSKAMGQDVATSLNPGQALVGIVHKELTALMGGDLGE 92

Query: 101 KPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL-----------KVMLAAGD 148
           +     F S  P VIL+ G+ G GKTT  GKLS+ +S   L           KV++ + D
Sbjct: 93  QASQLSFASQPPAVILMAGLQGAGKTTTTGKLSRLISKGLLPSGNLKKHPPKKVLVVSAD 152

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +R AAIDQLK  A + S DF  S        +A  A   A+ +  DVLI+DTAGRL  +
Sbjct: 153 VYRPAAIDQLKSVAQQASVDFFASSPDQKPIEIARAALDHAKRQFYDVLIVDTAGRLGID 212

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           + +M  I ++ + L       P   L V+DA  GQ+A+   + F      TG+++TKMDG
Sbjct: 213 TAMMNEIRELHQFLN------PVETLFVVDAMQGQDAVNVAKAFAEALPLTGVVLTKMDG 266

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            ARGG  + +      P+ F+GV E ++ LEPF  +  +  I G  D
Sbjct: 267 DARGGAALSVRHVTGKPLKFIGVSEKLDGLEPFHPERMAQRILGMGD 313


>gi|320535248|ref|ZP_08035372.1| signal recognition particle-docking protein FtsY [Treponema
           phagedenis F0421]
 gi|320147901|gb|EFW39393.1| signal recognition particle-docking protein FtsY [Treponema
           phagedenis F0421]
          Length = 292

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/286 (34%), Positives = 151/286 (52%), Gaps = 6/286 (2%)

Query: 24  TSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           T  +  EG+  +      LDD   E L D L+  D+G   A  I E LL +   K  +  
Sbjct: 2   TKRRFSEGLKRLFGMHINLDDSFFENLTDSLVEGDVGAKTAFDI-ETLLRQECKKQKAET 60

Query: 83  RVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GL 140
           +   D+  ++  +L PL K   +     +  V L++GVNGVGKTT I K++   +    +
Sbjct: 61  K--DDIIRILTGILTPLIKTVTFMPEEKKTSVYLILGVNGVGKTTSIAKIANYYNKILTM 118

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            ++LAA DTFR+AAI+QL+          V  + G D  A+ ++A +  +A+   +++ D
Sbjct: 119 PIVLAAADTFRAAAIEQLQYHGKALGLRVVAHQHGGDPGAVVFDAAEAIKAQGGGLVLAD 178

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRLH    L+  +GK+ ++ +       +  + VLDATTGQNA RQ E FH       
Sbjct: 179 TAGRLHTKENLIRELGKIDKIAESKADTGCYKKILVLDATTGQNAFRQAEAFHEAISIDA 238

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +++TK D TA+GG  I I     IP+ F+G GE  +D+ PF  K+F
Sbjct: 239 IMLTKYDSTAKGGNAITISKELNIPMLFIGTGEQYSDIAPFDTKEF 284


>gi|255529983|ref|YP_003090355.1| signal recognition particle protein [Pedobacter heparinus DSM 2366]
 gi|255342967|gb|ACU02293.1| signal recognition particle protein [Pedobacter heparinus DSM 2366]
          Length = 446

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 114/211 (54%), Gaps = 6/211 (2%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
            D    P +IL+ G+NG GKTT  GKL+  + + G K +L AGD +R AA+DQL+I  ++
Sbjct: 93  LDLKTNPTIILIAGLNGAGKTTFTGKLANFLKNKGKKPLLVAGDVYRPAAVDQLQILGEQ 152

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                  +    D   +A E   + + ++ +V+IIDTAGRL  +  +M  I  +    K 
Sbjct: 153 IGVPVYANTASKDPVGIALEGIAEGKKQQNNVIIIDTAGRLAIDEQMMDEIAAVKESTK- 211

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                PH +L V+DA TGQ+A+   + F+     TG+++TK+DG  RGG  + I      
Sbjct: 212 -----PHEILFVVDAMTGQDAVNTAKAFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVNK 266

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +  L+ F  +  ++ I G  D
Sbjct: 267 PIKFIGTGEKMEALDVFYPERMASRILGMGD 297


>gi|152991247|ref|YP_001356969.1| signal recognition particle protein [Nitratiruptor sp. SB155-2]
 gi|151423108|dbj|BAF70612.1| signal recognition particle protein [Nitratiruptor sp. SB155-2]
          Length = 452

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/279 (35%), Positives = 148/279 (53%), Gaps = 27/279 (9%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTK--------RYAKDVSVQRVLYDVSELIHKMLMPL 99
           EL+  L++SD    V  K+V+ELL K           +D  +Q +  +++E+   +  P 
Sbjct: 31  ELKKSLLKSD----VHHKVVKELLQKVELDTKAAGIGRDTFLQALQKNLTEI---LTAPG 83

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           +K      S  P V+L+ G+ G GKTT  GKL+  +   G KV+L A D  R AA++QL+
Sbjct: 84  AKQGFVYASKPPTVVLMTGLQGSGKTTTSGKLANYLKLRGKKVLLVAADLQRLAAVEQLR 143

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A +   DF   +   D   +  +A K A+ K  DV+IIDTAGRL  +  LM       
Sbjct: 144 QIASQIEVDFFGEDDQKDPVKVVNDALKLAREKLYDVVIIDTAGRLAIDEALM------- 196

Query: 220 RVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
             LK++   A P  V  V D+ TGQ+A+R    F+   G TG+I+TK DG A+GG  + +
Sbjct: 197 EELKKVKEAAHPDEVFYVADSLTGQDAVRSAAKFNEDVGITGVILTKYDGDAKGG--VAL 254

Query: 279 VVTHKI--PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + H+I  P+ F+G GE + DLE F+ +  +  + G  D
Sbjct: 255 SLAHQIGVPLRFIGTGEKMPDLEVFIPERITNRLMGAGD 293


>gi|110833658|ref|YP_692517.1| signal recognition particle protein Ffh [Alcanivorax borkumensis
           SK2]
 gi|110646769|emb|CAL16245.1| signal recognition particle protein Ffh [Alcanivorax borkumensis
           SK2]
          Length = 473

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 34/292 (11%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSE 90
           +D +R+ L ++   L+ +D+ + V ++ VE++  K   ++V        +  +++ D  E
Sbjct: 24  EDNIRDTLREVRKALLEADVALPVVKEFVEQVKEKALGQEVLQSLNPGQAFVKIVND--E 81

Query: 91  LIHKM------LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVM 143
           L+H M      L   +KP        P +IL+ G+ G GKTT + KL++ + +    KVM
Sbjct: 82  LVHTMGDANDGLDLATKP--------PAIILMAGLQGAGKTTSVAKLARFLQEREKKKVM 133

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           + + D +R AAI+QLK  A      F  S    D   +A  A  +A+ + +DVLI+DTAG
Sbjct: 134 VVSADIYRPAAIEQLKTLAGEVETHFFPSSSDQDPVDIANAALDEARRRYMDVLIVDTAG 193

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RLH +  +M+ I ++   +      +P   L V+DA TGQ+A    + F+     TG+I+
Sbjct: 194 RLHVDEDMMSEIKRLHGAI------SPVETLFVVDAMTGQDAANTAQAFNEALPLTGVIL 247

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TK DG +RGG  + +      P+ F+G+GE  + LEPF     ++ I G  D
Sbjct: 248 TKADGDSRGGAALSVRQLTGKPIKFIGMGEKTDALEPFHPDRIASRILGMGD 299


>gi|119510257|ref|ZP_01629394.1| signal recognition particle protein [Nodularia spumigena CCY9414]
 gi|119465106|gb|EAW46006.1| signal recognition particle protein [Nodularia spumigena CCY9414]
          Length = 490

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 147/289 (50%), Gaps = 17/289 (5%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--EL 91
           D IS   + D +RE +   L+ +D+ + V +  + E+ TK    DV V  V  D    ++
Sbjct: 20  DKISQSNIQDALRE-VRRALLEADVNLQVVKDFISEVETKAQGADV-VAGVRPDQQFIKI 77

Query: 92  IHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +H  L+ +    N   +    +P ++L+ G+ G GKTT   KL+  +       +L A D
Sbjct: 78  VHDELVRVMGAENVPLAETEEKPTIVLMAGLQGTGKTTATAKLALHLRKLERSCLLVATD 137

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            +R AAIDQL     +   D    E+GSDA    +A +  ++A+A+  + +IIDTAGRL 
Sbjct: 138 VYRPAAIDQLVTLGKQI--DVPVFELGSDADPVEIARQGVERAKAEGFNTVIIDTAGRLQ 195

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  +M  + ++   ++      PH  L V+D+ TGQ A      FH   G TG I+TK+
Sbjct: 196 IDEDMMGELARIKATVQ------PHETLLVVDSMTGQEAANLTRTFHDKIGITGAILTKL 249

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + +      P+ F+GVGE +  L+PF  +  ++ I G  D
Sbjct: 250 DGDTRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPERMASRILGMGD 298


>gi|316975692|gb|EFV59096.1| signal recognition protein [Trichinella spiralis]
          Length = 492

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 141/272 (51%), Gaps = 20/272 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSELIHKMLMPLSKPFN 104
           L+ +D+ + + +++ E + ++   ++++        +QRV++   EL+ K++ P  K   
Sbjct: 39  LLEADVNIRLVKQLRESVKSQINLEEMAAGMNKRRLIQRVVF--QELV-KLVDPGVK--Q 93

Query: 105 WDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           W  +  RP+VI+ VG+ G GKTT   KL+      G+K  L   DTFR+ A DQLK  A 
Sbjct: 94  WQPTKGRPNVIMFVGLQGCGKTTTCTKLAYYYQKRGMKTCLICADTFRAGAFDQLKQNAT 153

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +    F  S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V  
Sbjct: 154 KARIPFYGSYTEMDPVVIAAEGVEKFKQENFEIIIVDTSGRHKQEESLFE---EMLQVAN 210

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            + P    +V+ V+DA+ GQ    Q   FH       +I+TK+DG ARGGG +  V    
Sbjct: 211 TVQPD---NVIYVMDASIGQACEAQARAFHEKVDVASVIVTKLDGHARGGGALSAVAATG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+G GE I+D EPF  K F   + G  D
Sbjct: 268 SPIIFIGTGEHIDDFEPFKVKPFVQKLLGMGD 299


>gi|154290868|ref|XP_001546023.1| hypothetical protein BC1G_15366 [Botryotinia fuckeliana B05.10]
 gi|150847185|gb|EDN22378.1| hypothetical protein BC1G_15366 [Botryotinia fuckeliana B05.10]
          Length = 311

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 149/301 (49%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80
           ++   +TD+  S  LD    DG+ +E+   L+ +D+ V +   + + +      K+++  
Sbjct: 9   RINAAVTDLTRSSNLDEKAFDGMIKEICSALLEADVNVKLVGNLRKSIKASVNFKELAPA 68

Query: 81  ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                 +Q+ +YD  EL+ K++ P ++PF      + ++I+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKKVIQKAVYD--ELV-KLVDPHAEPFKPK-KGKANIIMFVGLQGAGKTTTCTKLARW 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + +K 
Sbjct: 125 YQSRGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAKEGVDKFKKEKF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +++I+DT+GR      L   +  +   +K      P   + V+DA+ GQ A  Q + F  
Sbjct: 185 EIIIVDTSGRHRQEDALFQEMVDIQTAVK------PDQTVMVMDASIGQQAEAQSKAFKE 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ F+G GE + DLE F    F + + G  
Sbjct: 239 TADFGAIIITKTDGHASGGGAISAVAATHTPIIFIGTGEHMLDLEKFAPTQFVSKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|331006945|ref|ZP_08330190.1| Signal recognition particle, subunit Ffh SRP54 [gamma
           proteobacterium IMCC1989]
 gi|330419265|gb|EGG93686.1| Signal recognition particle, subunit Ffh SRP54 [gamma
           proteobacterium IMCC1989]
          Length = 469

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 160/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  I    RL    +++ L+D+   L+ +D+ + V +  VE++  +   
Sbjct: 2   FQNLTDRLSKSLKKISGKGRLSHANIQDALKDVRKALLEADVALPVVKGFVEKVRKRAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q+ +  V   + +M+   ++  N   +  P VIL+ G+ G GKTT + KL
Sbjct: 62  QEVARSLNPSQQFIKVVQSELTEMMGEANETLNL-AAQPPAVILMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAI QL+  A +  A F  S        +A EA   A+
Sbjct: 121 AKYLKEREKKKVMVVSADVYRPAAIQQLETLAGQVEAVFHPSSTDQKPIDIAQEAISAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DV+I+DTAGRL  +  LMA I  + + +       P   L V+DA  GQ+A+   +
Sbjct: 181 KQHLDVVIVDTAGRLAIDDALMAEIQGLQKAIN------PIETLFVIDAMIGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +  T   P+ FLG+GE ++ LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRATTGKPIKFLGMGEKVDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|14520695|ref|NP_126170.1| signal recognition particle protein Srp54 [Pyrococcus abyssi GE5]
 gi|12230641|sp|Q9V1E8|SRP54_PYRAB RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|5457911|emb|CAB49401.1| srp54 signal recognition particle, subunit SRP54 [Pyrococcus abyssi
           GE5]
          Length = 443

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 142/279 (50%), Gaps = 16/279 (5%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIHKML 96
           V+E + D+   LI++D+ V +  K+ +E+    L ++    +S  + ++  V E + K L
Sbjct: 28  VKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 87

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              +KP   +   +P ++L+VGV G GKTT + KL++     G KV +   DT+R  A  
Sbjct: 88  GTEAKPI--EIKEKPTILLMVGVQGSGKTTTVAKLARHFQKRGYKVGVVCSDTWRPGAYH 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK   D    +        DA  LA E  +  +AK VD++I+DTAGR      L+  + 
Sbjct: 146 QLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKAKGVDLIIVDTAGRHKEEKDLIEEMR 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +   +K      PH V+ V+D T GQ A  Q   F        +I+TK+D +A+GGG +
Sbjct: 206 MISNEIK------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             V     P+ F+G GE I+DLEPF    F + + G  D
Sbjct: 260 SAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGD 298


>gi|260893271|ref|YP_003239368.1| signal recognition particle protein [Ammonifex degensii KC4]
 gi|260865412|gb|ACX52518.1| signal recognition particle protein [Ammonifex degensii KC4]
          Length = 445

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 114/205 (55%), Gaps = 8/205 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+++VG+ G GKTT   KL+  +   G + +L A D +R AA+ QL++  ++     V
Sbjct: 102 PTVVMLVGLQGSGKTTTAAKLALSLKKQGRRPLLVAADVYRPAAVKQLQVLGEQIQVP-V 160

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S  G +   +A  A  +A  K  DV+IIDTAGRLH N  LM  + ++   +K      P
Sbjct: 161 WSRPG-NPVEIAASAMHEANHKGYDVVIIDTAGRLHINEELMQELEEIKARVK------P 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H VL V+DA TGQ+A+   E FH   G  G+++TK+DG  RGG  + I      P+ F+G
Sbjct: 214 HEVLLVVDAMTGQDAVTVAETFHQRLGLDGVVLTKLDGDTRGGAALSIRAVTGCPIKFVG 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           VGE ++ LEPF     +  I G  D
Sbjct: 274 VGEKLDMLEPFHPDRMADRILGMGD 298


>gi|212712913|ref|ZP_03321041.1| hypothetical protein PROVALCAL_04010 [Providencia alcalifaciens DSM
           30120]
 gi|212684458|gb|EEB43986.1| hypothetical protein PROVALCAL_04010 [Providencia alcalifaciens DSM
           30120]
          Length = 453

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 162/306 (52%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL DD +++ L ++   L+ +D+ + V ++ ++++      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVREFIQKVKESAVG 61

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVILVVGVNGVGKTTVIGK 130
           +DV+  + L    E I  +   L++    +       +  P V+L+ G+ G GKTT + K
Sbjct: 62  QDVN--KSLTPGQEFIKIVQNELTRAMGEENHQLNLSAQPPAVVLMAGLQGAGKTTSVAK 119

Query: 131 LSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +   K +L  + D +R AAI QL+  A+    DF  SE+    AA+  +A K A
Sbjct: 120 LGKLLKEKQKKKVLVVSADVYRPAAIKQLETLAEAVGVDFFPSEVQEKPAAIVQKALKHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q +  DVL++DTAGRLH +  +M  I ++ R++       P   L V+DA TGQ+A    
Sbjct: 180 QLQFYDVLLVDTAGRLHVDEAMMEEIQEVHRIIN------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF  +  ++ 
Sbjct: 234 KAFNEALPLTGIVLTKVDGDARGGAALSIRAITGKPIKFLGVGEKTDALEPFHPERVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|59802021|ref|YP_208733.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           FA 1090]
 gi|59718916|gb|AAW90321.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           FA 1090]
          Length = 456

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 152/283 (53%), Gaps = 16/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   S  P +IL+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVSP-PAIILMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             I  +  V+       P   L V+DA  GQ+A+   + F+      G+++TKMDG +RG
Sbjct: 203 NEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLNGVVLTKMDGDSRG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 257 GAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|323454201|gb|EGB10071.1| hypothetical protein AURANDRAFT_36724 [Aureococcus anophagefferens]
          Length = 497

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 141/286 (49%), Gaps = 13/286 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVS 89
           +IS   LD  +++ +   L+ +D+ V V  ++ + + T+   ++ S      + +   V 
Sbjct: 22  VISEEVLDKMLKD-IAAALLEADVNVRVVMELRKAIKTRANLEEESAGTNRRKMIQKAVV 80

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           E +  ML P  K         P+VI+ VG+ G GKTT I K +      G K  +   DT
Sbjct: 81  EELAGMLDPGVKAHEMK-KGSPNVIMFVGLQGAGKTTTIAKFANHYLRKGFKCCMVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQL+  A +    F  S   +D   +A E   Q +A+K +V+I+DT+GR    +
Sbjct: 140 FRAGAYDQLRQNATKLRCPFYGSYTEADPVRIAQEGVDQFKAEKYEVIIVDTSGRHKQET 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L   + ++   ++      P +V+ VLDAT GQ    Q   FH       +++TK+DG 
Sbjct: 200 ALFEEMQEIRAAIE------PQNVIFVLDATQGQAVHEQASSFHEAIDIGSVVITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V     P+ FLG GE  +D EPF A  F + + G  D
Sbjct: 254 AKGGGALSAVAATGAPILFLGSGEHFDDFEPFNAHSFVSRLLGMGD 299


>gi|240017397|ref|ZP_04723937.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           FA6140]
          Length = 456

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 152/283 (53%), Gaps = 16/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   S  P +IL+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVSP-PAIILMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             I  +  V+       P   L V+DA  GQ+A+   + F+      G+++TKMDG +RG
Sbjct: 203 NEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLNGVVLTKMDGDSRG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 257 GAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|309378177|emb|CBX23185.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 456

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+   +   +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQIGVDFFPSDTNQNPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVSPVETLFVIDAMLGQDAVNTAQAFNEALPLTGIVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     +  I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRIAGRILGMGD 299


>gi|313669229|ref|YP_004049513.1| signal recognition particle protein [Neisseria lactamica ST-640]
 gi|313006691|emb|CBN88159.1| signal recognition particle protein [Neisseria lactamica 020-06]
          Length = 456

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+   +   +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQNPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVSPVETLFVIDAMLGQDAVNTAQAFNEALPLTGIVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     +  I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRIAGRILGMGD 299


>gi|239999793|ref|ZP_04719717.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae 35/02]
 gi|268595603|ref|ZP_06129770.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae 35/02]
 gi|268548992|gb|EEZ44410.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae 35/02]
 gi|317165080|gb|ADV08621.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 456

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 152/283 (53%), Gaps = 16/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVSLPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   S  P +IL+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVSP-PAIILMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             I  +  V+       P   L V+DA  GQ+A+   + F+      G+++TKMDG +RG
Sbjct: 203 NEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLNGVVLTKMDGDSRG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 257 GAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|194099592|ref|YP_002002723.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae NCCP11945]
 gi|240014949|ref|ZP_04721862.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           DGI18]
 gi|240113818|ref|ZP_04728308.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           MS11]
 gi|240116552|ref|ZP_04730614.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           PID18]
 gi|240122018|ref|ZP_04734980.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           PID24-1]
 gi|240124316|ref|ZP_04737272.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           PID332]
 gi|240126527|ref|ZP_04739413.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|254494575|ref|ZP_05107746.1| signal recognition particle protein [Neisseria gonorrhoeae 1291]
 gi|268599887|ref|ZP_06134054.1| signal recognition particle protein [Neisseria gonorrhoeae MS11]
 gi|268602222|ref|ZP_06136389.1| signal recognition particle protein [Neisseria gonorrhoeae PID18]
 gi|268682943|ref|ZP_06149805.1| signal recognition particle protein [Neisseria gonorrhoeae PID332]
 gi|268685108|ref|ZP_06151970.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|19568856|gb|AAL91941.1|AF482013_1 signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae]
 gi|193934882|gb|ACF30706.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae NCCP11945]
 gi|226513615|gb|EEH62960.1| signal recognition particle protein [Neisseria gonorrhoeae 1291]
 gi|268584018|gb|EEZ48694.1| signal recognition particle protein [Neisseria gonorrhoeae MS11]
 gi|268586353|gb|EEZ51029.1| signal recognition particle protein [Neisseria gonorrhoeae PID18]
 gi|268623227|gb|EEZ55627.1| signal recognition particle protein [Neisseria gonorrhoeae PID332]
 gi|268625392|gb|EEZ57792.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-92-679]
          Length = 456

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 152/283 (53%), Gaps = 16/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   S  P +IL+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVSP-PAIILMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             I  +  V+       P   L V+DA  GQ+A+   + F+      G+++TKMDG +RG
Sbjct: 203 NEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLNGVVLTKMDGDSRG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 257 GAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|256545499|ref|ZP_05472861.1| signal recognition particle protein [Anaerococcus vaginalis ATCC
           51170]
 gi|256398895|gb|EEU12510.1| signal recognition particle protein [Anaerococcus vaginalis ATCC
           51170]
          Length = 445

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 156/304 (51%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F++ S KL+E +  +    +L     D V  E++  L+ +D+   V ++ V+++  +   
Sbjct: 3   FSNLSEKLQESLGKLTGKGKLSEKDIDNVAREIKLSLLEADVNYKVVKEFVKKIKERAMG 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E +  ++   +       S  PHV+L+VG+ G GKTT  GKL
Sbjct: 63  QDVMESLTPGQTVIKIVNEELTNLMGKENSKLELKGST-PHVVLMVGLQGSGKTTHSGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            +K+   G   +L A D +R AAI+QLK+   +   + V  +   D    A EA + A+ 
Sbjct: 122 VRKLKKEGRNPLLVALDVYRPAAIEQLKVVGKQAEVE-VFEKGKQDPVQTANEAKEYARR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  +  LM  +  + + +K      P  +L V+DA  GQ ++   + 
Sbjct: 181 NNNDVVIMDTAGRLQIDEDLMDELKNIKKAVK------PDEILLVVDAMVGQESVNVAKT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG ARGG  + I      P+ F+G GE ++DLE F     ++ I 
Sbjct: 235 FDEYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGTGEKLDDLEAFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|225025490|ref|ZP_03714682.1| hypothetical protein EIKCOROL_02390 [Eikenella corrodens ATCC
           23834]
 gi|224941774|gb|EEG22983.1| hypothetical protein EIKCOROL_02390 [Eikenella corrodens ATCC
           23834]
          Length = 453

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 115/206 (55%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+L+ G+ G GKTT  GKL++ + +   K V+L + D +R AAI+QL++ A++  ADF
Sbjct: 100 PAVVLMTGLQGAGKTTTAGKLARLLKEEQRKKVLLVSADVYRPAAIEQLRLLAEQVGADF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S++     A+A  A   A+    DVL++DTAGRL  + ++MA I  +   +       
Sbjct: 160 FPSDVSQQPVAIAQAALDYAKKHFYDVLMVDTAGRLAVDEVMMAEIKALHEAVN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+I+TKMDG ARGG  + +      P+ F+
Sbjct: 214 PVETLFVVDAMLGQDAVNTAQAFNEALPLTGVILTKMDGDARGGAALSVRHVTGKPIKFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I  LEPF     +  I G  D
Sbjct: 274 GTGEKIGGLEPFHPDRIAGRILGMGD 299


>gi|170765626|ref|ZP_02900437.1| signal recognition particle protein [Escherichia albertii TW07627]
 gi|170124772|gb|EDS93703.1| signal recognition particle protein [Escherichia albertii TW07627]
          Length = 453

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|3746964|gb|AAC64139.1| signal recognition particle 54 kDa subunit precursor [Arabidopsis
           thaliana]
          Length = 564

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 145/285 (50%), Gaps = 23/285 (8%)

Query: 43  DGVREELEDL---LIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSEL 91
           D + E + D+   L+ +D+ + V ++ V+ +        + +    D  + ++++D  EL
Sbjct: 101 DNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHD--EL 158

Query: 92  IHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +  M   +S+     F+   P VIL+ G+ GVGKTTV  KL+  +   G   ML AGD +
Sbjct: 159 VKLMGGEVSE---LQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVY 215

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAIDQL I  ++       +      A +A +  K+A+   VDV+I+DTAGRL  +  
Sbjct: 216 RPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKG 275

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M  +  + + L       P  VL V+DA TGQ A   V  F+   G TG I+TK+DG +
Sbjct: 276 MMDELKDVKKFLN------PTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDS 329

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + +      P+  +G GE + DLEPF     +  I G  D
Sbjct: 330 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 374


>gi|260439687|ref|ZP_05793503.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae DGI2]
 gi|291042929|ref|ZP_06568670.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae DGI2]
 gi|291013363|gb|EFE05329.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae DGI2]
          Length = 456

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 152/283 (53%), Gaps = 16/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKAIGQEVAGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   S  P +IL+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVSP-PAIILMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             I  +  V+       P   L V+DA  GQ+A+   + F+      G+++TKMDG +RG
Sbjct: 203 NEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLNGVVLTKMDGDSRG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 257 GAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|325053853|pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
           (Srp) In Complex With Its Receptor(Sr)
 gi|325053855|pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
           (Srp) In Complex With Its Receptor(Sr)
          Length = 433

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|77165724|ref|YP_344249.1| Signal recognition particle protein [Nitrosococcus oceani ATCC
           19707]
 gi|254434970|ref|ZP_05048478.1| signal recognition particle protein [Nitrosococcus oceani AFC27]
 gi|76884038|gb|ABA58719.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Nitrosococcus oceani ATCC 19707]
 gi|207091303|gb|EDZ68574.1| signal recognition particle protein [Nitrosococcus oceani AFC27]
          Length = 452

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 118/207 (57%), Gaps = 9/207 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT + KL++ + +   K V++ + D +R AAI QL+  A+    +F
Sbjct: 100 PAVILMAGLQGSGKTTTVAKLARWLKEQQKKSVLVTSADVYRPAAIQQLETLANEVGVEF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL-DPH 228
             S+   D  A+A  A +QA+ + +DVLIIDTAGRLH + ++MA I       KRL D  
Sbjct: 160 YPSKPTEDPVAIAQGAIQQARTQVLDVLIIDTAGRLHVDDLMMAEI-------KRLHDAV 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L V+D+ TGQ+A    + F+     TG+I+TK+DG ARGG  + I      P+ F
Sbjct: 213 KPVETLFVVDSMTGQDAANTAQAFNDSLALTGVILTKVDGDARGGAALSIRQITGKPIKF 272

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           LGVGE    LE F     ++ I G  D
Sbjct: 273 LGVGEKTAALELFHPDRLASRILGMGD 299


>gi|260856699|ref|YP_003230590.1| signal recognition particle ffs [Escherichia coli O26:H11 str.
           11368]
 gi|260869291|ref|YP_003235693.1| signal recognition particle ffs [Escherichia coli O111:H- str.
           11128]
 gi|257755348|dbj|BAI26850.1| signal recognition particle ffs [Escherichia coli O26:H11 str.
           11368]
 gi|257765647|dbj|BAI37142.1| signal recognition particle ffs [Escherichia coli O111:H- str.
           11128]
 gi|323156264|gb|EFZ42423.1| signal recognition particle protein [Escherichia coli EPECa14]
 gi|323177264|gb|EFZ62852.1| signal recognition particle protein [Escherichia coli 1180]
          Length = 453

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|240081539|ref|ZP_04726082.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae FA19]
 gi|240118776|ref|ZP_04732838.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae PID1]
 gi|240128989|ref|ZP_04741650.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268597635|ref|ZP_06131802.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae FA19]
 gi|268604488|ref|ZP_06138655.1| signal recognition particle protein [Neisseria gonorrhoeae PID1]
 gi|268687370|ref|ZP_06154232.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268551423|gb|EEZ46442.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae FA19]
 gi|268588619|gb|EEZ53295.1| signal recognition particle protein [Neisseria gonorrhoeae PID1]
 gi|268627654|gb|EEZ60054.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 456

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 152/283 (53%), Gaps = 16/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVSLPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   S  P +IL+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVSP-PAIILMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             I  +  V+       P   L V+DA  GQ+A+   + F+      G+++TKMDG +RG
Sbjct: 203 NEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLNGVVLTKMDGDSRG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 257 GAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|256851291|ref|ZP_05556680.1| signal recognition particle protein [Lactobacillus jensenii
           27-2-CHN]
 gi|260660715|ref|ZP_05861630.1| signal recognition particle protein [Lactobacillus jensenii
           115-3-CHN]
 gi|282933265|ref|ZP_06338652.1| signal recognition particle protein [Lactobacillus jensenii 208-1]
 gi|297206159|ref|ZP_06923554.1| signal recognition particle protein [Lactobacillus jensenii JV-V16]
 gi|256616353|gb|EEU21541.1| signal recognition particle protein [Lactobacillus jensenii
           27-2-CHN]
 gi|260548437|gb|EEX24412.1| signal recognition particle protein [Lactobacillus jensenii
           115-3-CHN]
 gi|281302769|gb|EFA94984.1| signal recognition particle protein [Lactobacillus jensenii 208-1]
 gi|297149285|gb|EFH29583.1| signal recognition particle protein [Lactobacillus jensenii JV-V16]
          Length = 475

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 163/316 (51%), Gaps = 23/316 (7%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E+LS   ++ K   + + K K    DI ++ R       E+   L+ +D+   V + 
Sbjct: 1   MAFENLS--ERIQKALKNLTGKGKVSEADINAASR-------EIRLALLEADVNFKVVKD 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++++  +   ++V       Q+++  V++ + KM+   +   N    H P +I++VG+ 
Sbjct: 52  FIKKIKERALGQEVQGSLTPGQQIIKIVNDELTKMMGEEAAKLNK-APHIPTIIMMVGLQ 110

Query: 121 GVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT +GKL+K + D    + +L AGD +R AAIDQLK   D+ S   V SE   D A
Sbjct: 111 GTGKTTTVGKLAKYLMDTEKARPLLIAGDIYRPAAIDQLKQIGDQLSVP-VFSEDEKDVA 169

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +  +   QA+  K D ++IDTAGRL  +  LM  + ++  V K      P +++ V+DA
Sbjct: 170 KIVADGLAQAKEAKNDYVLIDTAGRLEIDEALMEELERVKEVAK------PDNIVLVVDA 223

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ   +  E F      TG+I+TK+DG  RGG  + I      P+ F G GE +++LE
Sbjct: 224 MTGQVGAQVAETFDKRLDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSELE 283

Query: 300 PFVAKDFSAVITGCLD 315
            F     ++ I G  D
Sbjct: 284 GFYPDRMASRILGMGD 299


>gi|119390344|pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
          Length = 430

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 1   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 60

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 61  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 120 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 180 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 231 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 290

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 291 SRILGMGD 298


>gi|15803132|ref|NP_289163.1| signal recognition particle protein [Escherichia coli O157:H7
           EDL933]
 gi|15832727|ref|NP_311500.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130531|ref|NP_417101.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26248973|ref|NP_755013.1| signal recognition particle protein [Escherichia coli CFT073]
 gi|74313200|ref|YP_311619.1| signal recognition particle protein [Shigella sonnei Ss046]
 gi|82545154|ref|YP_409101.1| signal recognition particle protein [Shigella boydii Sb227]
 gi|89109411|ref|AP_003191.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli str. K-12 substr. W3110]
 gi|91211944|ref|YP_541930.1| signal recognition particle protein [Escherichia coli UTI89]
 gi|110642771|ref|YP_670501.1| signal recognition particle protein [Escherichia coli 536]
 gi|117624832|ref|YP_853745.1| signal recognition particle protein [Escherichia coli APEC O1]
 gi|157159233|ref|YP_001463929.1| signal recognition particle protein [Escherichia coli E24377A]
 gi|157162086|ref|YP_001459404.1| signal recognition particle protein [Escherichia coli HS]
 gi|168762402|ref|ZP_02787409.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768698|ref|ZP_02793705.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773463|ref|ZP_02798470.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778588|ref|ZP_02803595.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789512|ref|ZP_02814519.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC869]
 gi|168801727|ref|ZP_02826734.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC508]
 gi|170019113|ref|YP_001724067.1| signal recognition particle protein [Escherichia coli ATCC 8739]
 gi|170082214|ref|YP_001731534.1| Signal recognition particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|187730941|ref|YP_001881400.1| signal recognition particle protein [Shigella boydii CDC 3083-94]
 gi|188494435|ref|ZP_03001705.1| signal recognition particle protein [Escherichia coli 53638]
 gi|191169064|ref|ZP_03030827.1| signal recognition particle protein [Escherichia coli B7A]
 gi|193064057|ref|ZP_03045142.1| signal recognition particle protein [Escherichia coli E22]
 gi|194430165|ref|ZP_03062666.1| signal recognition particle protein [Escherichia coli B171]
 gi|194439372|ref|ZP_03071450.1| signal recognition particle protein [Escherichia coli 101-1]
 gi|208806160|ref|ZP_03248497.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813814|ref|ZP_03255143.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819384|ref|ZP_03259704.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398002|ref|YP_002272081.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920085|ref|YP_002294169.1| signal recognition particle protein [Escherichia coli SE11]
 gi|215487960|ref|YP_002330391.1| signal recognition particle protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327115|ref|ZP_03443198.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547871|ref|YP_002381662.1| signal recognition particle protein [Escherichia fergusonii ATCC
           35469]
 gi|218559530|ref|YP_002392443.1| signal recognition particle protein [Escherichia coli S88]
 gi|218690728|ref|YP_002398940.1| signal recognition particle protein [Escherichia coli ED1a]
 gi|218696234|ref|YP_002403901.1| signal recognition particle protein [Escherichia coli 55989]
 gi|218706111|ref|YP_002413630.1| signal recognition particle protein [Escherichia coli UMN026]
 gi|227888176|ref|ZP_04005981.1| signal recognition particle protein [Escherichia coli 83972]
 gi|237706802|ref|ZP_04537283.1| signal recognition particle protein [Escherichia sp. 3_2_53FAA]
 gi|238901770|ref|YP_002927566.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli BW2952]
 gi|253772496|ref|YP_003035327.1| signal recognition particle protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037686|ref|ZP_04871744.1| signal recognition particle protein [Escherichia sp. 1_1_43]
 gi|254162580|ref|YP_003045688.1| signal recognition particle protein [Escherichia coli B str.
           REL606]
 gi|254794556|ref|YP_003079393.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019571|ref|ZP_05433436.1| signal recognition particle protein [Shigella sp. D9]
 gi|256024863|ref|ZP_05438728.1| signal recognition particle protein [Escherichia sp. 4_1_40B]
 gi|260845291|ref|YP_003223069.1| signal recognition particle ffs [Escherichia coli O103:H2 str.
           12009]
 gi|261227493|ref|ZP_05941774.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255687|ref|ZP_05948220.1| signal recognition particle ffs [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283882|ref|YP_003500700.1| Signal recognition particle protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|293406117|ref|ZP_06650043.1| signal recognition particle protein [Escherichia coli FVEC1412]
 gi|293412000|ref|ZP_06654723.1| signal recognition particle protein [Escherichia coli B354]
 gi|293415881|ref|ZP_06658521.1| signal recognition particle protein [Escherichia coli B185]
 gi|293448960|ref|ZP_06663381.1| signal recognition particle protein [Escherichia coli B088]
 gi|298381850|ref|ZP_06991447.1| signal recognition particle protein [Escherichia coli FVEC1302]
 gi|300900204|ref|ZP_07118392.1| signal recognition particle protein [Escherichia coli MS 198-1]
 gi|300905070|ref|ZP_07122879.1| signal recognition particle protein [Escherichia coli MS 84-1]
 gi|300921154|ref|ZP_07137533.1| signal recognition particle protein [Escherichia coli MS 115-1]
 gi|300925602|ref|ZP_07141472.1| signal recognition particle protein [Escherichia coli MS 182-1]
 gi|300930665|ref|ZP_07146051.1| signal recognition particle protein [Escherichia coli MS 187-1]
 gi|300940948|ref|ZP_07155472.1| signal recognition particle protein [Escherichia coli MS 21-1]
 gi|300949005|ref|ZP_07163058.1| signal recognition particle protein [Escherichia coli MS 116-1]
 gi|300957395|ref|ZP_07169609.1| signal recognition particle protein [Escherichia coli MS 175-1]
 gi|300986820|ref|ZP_07177809.1| signal recognition particle protein [Escherichia coli MS 45-1]
 gi|300990720|ref|ZP_07179305.1| signal recognition particle protein [Escherichia coli MS 200-1]
 gi|301026378|ref|ZP_07189824.1| signal recognition particle protein [Escherichia coli MS 69-1]
 gi|301026818|ref|ZP_07190220.1| signal recognition particle protein [Escherichia coli MS 196-1]
 gi|301050480|ref|ZP_07197359.1| signal recognition particle protein [Escherichia coli MS 185-1]
 gi|301305745|ref|ZP_07211832.1| signal recognition particle protein [Escherichia coli MS 124-1]
 gi|301326730|ref|ZP_07220044.1| signal recognition particle protein [Escherichia coli MS 78-1]
 gi|301644052|ref|ZP_07244068.1| signal recognition particle protein [Escherichia coli MS 146-1]
 gi|306812472|ref|ZP_07446670.1| signal recognition particle protein [Escherichia coli NC101]
 gi|307139331|ref|ZP_07498687.1| signal recognition particle protein [Escherichia coli H736]
 gi|307315078|ref|ZP_07594662.1| signal recognition particle protein [Escherichia coli W]
 gi|309794121|ref|ZP_07688545.1| signal recognition particle protein [Escherichia coli MS 145-7]
 gi|312965541|ref|ZP_07779772.1| signal recognition particle protein [Escherichia coli 2362-75]
 gi|312973148|ref|ZP_07787321.1| signal recognition particle protein [Escherichia coli 1827-70]
 gi|331643326|ref|ZP_08344457.1| signal recognition particle protein [Escherichia coli H736]
 gi|331648352|ref|ZP_08349440.1| signal recognition particle protein [Escherichia coli M605]
 gi|331654067|ref|ZP_08355067.1| signal recognition particle protein [Escherichia coli M718]
 gi|331658758|ref|ZP_08359700.1| signal recognition particle protein [Escherichia coli TA206]
 gi|331664175|ref|ZP_08365084.1| signal recognition particle protein [Escherichia coli TA143]
 gi|331669360|ref|ZP_08370206.1| signal recognition particle protein [Escherichia coli TA271]
 gi|331674050|ref|ZP_08374812.1| signal recognition particle protein [Escherichia coli TA280]
 gi|331678601|ref|ZP_08379275.1| signal recognition particle protein [Escherichia coli H591]
 gi|331684266|ref|ZP_08384858.1| signal recognition particle protein [Escherichia coli H299]
 gi|332280695|ref|ZP_08393108.1| signal recognition particle protein Ffh [Shigella sp. D9]
 gi|84028787|sp|P0AGD9|SRP54_ECO57 RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|84028788|sp|P0AGD8|SRP54_ECOL6 RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|84028789|sp|P0AGD7|SRP54_ECOLI RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog; AltName: Full=p48
 gi|12517035|gb|AAG57721.1|AE005491_1 GTP-binding export factor binds to signal sequence, GTP and RNA
           [Escherichia coli O157:H7 str. EDL933]
 gi|26109379|gb|AAN81581.1|AE016764_263 Signal recognition particle protein [Escherichia coli CFT073]
 gi|1788963|gb|AAC75659.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|13362944|dbj|BAB36896.1| signal recognition particle protein Ffh [Escherichia coli O157:H7
           str. Sakai]
 gi|73856677|gb|AAZ89384.1| GTP-binding export factor binds to signal sequence, GTP and RNA
           [Shigella sonnei Ss046]
 gi|81246565|gb|ABB67273.1| GTP-binding export factor [Shigella boydii Sb227]
 gi|85675481|dbj|BAA16495.2| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli str. K12 substr. W3110]
 gi|91073518|gb|ABE08399.1| signal recognition particle protein [Escherichia coli UTI89]
 gi|110344363|gb|ABG70600.1| signal recognition particle protein [Escherichia coli 536]
 gi|115513956|gb|ABJ02031.1| signal recognition particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli APEC O1]
 gi|157067766|gb|ABV07021.1| signal recognition particle protein [Escherichia coli HS]
 gi|157081263|gb|ABV20971.1| signal recognition particle protein [Escherichia coli E24377A]
 gi|169754041|gb|ACA76740.1| signal recognition particle protein [Escherichia coli ATCC 8739]
 gi|169890049|gb|ACB03756.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|187427933|gb|ACD07207.1| signal recognition particle protein [Shigella boydii CDC 3083-94]
 gi|187770557|gb|EDU34401.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188489634|gb|EDU64737.1| signal recognition particle protein [Escherichia coli 53638]
 gi|189003543|gb|EDU72529.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189362137|gb|EDU80556.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367273|gb|EDU85689.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370881|gb|EDU89297.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189376173|gb|EDU94589.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC508]
 gi|190900905|gb|EDV60691.1| signal recognition particle protein [Escherichia coli B7A]
 gi|192929292|gb|EDV82901.1| signal recognition particle protein [Escherichia coli E22]
 gi|194411790|gb|EDX28111.1| signal recognition particle protein [Escherichia coli B171]
 gi|194421734|gb|EDX37743.1| signal recognition particle protein [Escherichia coli 101-1]
 gi|208725961|gb|EDZ75562.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735091|gb|EDZ83778.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739507|gb|EDZ87189.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159402|gb|ACI36835.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209762528|gb|ACI79576.1| signal recognition particle protein Ffh [Escherichia coli]
 gi|209762530|gb|ACI79577.1| signal recognition particle protein Ffh [Escherichia coli]
 gi|209762532|gb|ACI79578.1| signal recognition particle protein Ffh [Escherichia coli]
 gi|209762534|gb|ACI79579.1| signal recognition particle protein Ffh [Escherichia coli]
 gi|209762536|gb|ACI79580.1| signal recognition particle protein Ffh [Escherichia coli]
 gi|209913344|dbj|BAG78418.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|215266032|emb|CAS10447.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli O127:H6 str. E2348/69]
 gi|217319482|gb|EEC27907.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352966|emb|CAU98766.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli 55989]
 gi|218355412|emb|CAQ88021.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia fergusonii ATCC 35469]
 gi|218366299|emb|CAR04050.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli S88]
 gi|218428292|emb|CAR09216.2| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli ED1a]
 gi|218433208|emb|CAR14106.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli UMN026]
 gi|222034312|emb|CAP77053.1| Signal recognition particle protein [Escherichia coli LF82]
 gi|226839310|gb|EEH71331.1| signal recognition particle protein [Escherichia sp. 1_1_43]
 gi|226899842|gb|EEH86101.1| signal recognition particle protein [Escherichia sp. 3_2_53FAA]
 gi|227834816|gb|EEJ45282.1| signal recognition particle protein [Escherichia coli 83972]
 gi|238863555|gb|ACR65553.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli BW2952]
 gi|242378205|emb|CAQ32980.1| protein component of the signal recognition particle (SRP), subunit
           of Signal Recognition Particle Protein Translocation
           System [Escherichia coli BL21(DE3)]
 gi|253323540|gb|ACT28142.1| signal recognition particle protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974481|gb|ACT40152.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli B str. REL606]
 gi|253978648|gb|ACT44318.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli BL21(DE3)]
 gi|254593956|gb|ACT73317.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli O157:H7 str. TW14359]
 gi|257760438|dbj|BAI31935.1| signal recognition particle ffs [Escherichia coli O103:H2 str.
           12009]
 gi|260448316|gb|ACX38738.1| signal recognition particle protein [Escherichia coli DH1]
 gi|281179656|dbj|BAI55986.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|284922556|emb|CBG35643.1| signal recognition particle protein [Escherichia coli 042]
 gi|290763755|gb|ADD57716.1| Signal recognition particle protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|291322050|gb|EFE61479.1| signal recognition particle protein [Escherichia coli B088]
 gi|291426123|gb|EFE99155.1| signal recognition particle protein [Escherichia coli FVEC1412]
 gi|291432070|gb|EFF05052.1| signal recognition particle protein [Escherichia coli B185]
 gi|291468771|gb|EFF11262.1| signal recognition particle protein [Escherichia coli B354]
 gi|294492947|gb|ADE91703.1| signal recognition particle protein [Escherichia coli IHE3034]
 gi|298276990|gb|EFI18506.1| signal recognition particle protein [Escherichia coli FVEC1302]
 gi|299879564|gb|EFI87775.1| signal recognition particle protein [Escherichia coli MS 196-1]
 gi|300297827|gb|EFJ54212.1| signal recognition particle protein [Escherichia coli MS 185-1]
 gi|300305688|gb|EFJ60208.1| signal recognition particle protein [Escherichia coli MS 200-1]
 gi|300315830|gb|EFJ65614.1| signal recognition particle protein [Escherichia coli MS 175-1]
 gi|300356261|gb|EFJ72131.1| signal recognition particle protein [Escherichia coli MS 198-1]
 gi|300395564|gb|EFJ79102.1| signal recognition particle protein [Escherichia coli MS 69-1]
 gi|300403021|gb|EFJ86559.1| signal recognition particle protein [Escherichia coli MS 84-1]
 gi|300407872|gb|EFJ91410.1| signal recognition particle protein [Escherichia coli MS 45-1]
 gi|300411904|gb|EFJ95214.1| signal recognition particle protein [Escherichia coli MS 115-1]
 gi|300418297|gb|EFK01608.1| signal recognition particle protein [Escherichia coli MS 182-1]
 gi|300451532|gb|EFK15152.1| signal recognition particle protein [Escherichia coli MS 116-1]
 gi|300454272|gb|EFK17765.1| signal recognition particle protein [Escherichia coli MS 21-1]
 gi|300461462|gb|EFK24955.1| signal recognition particle protein [Escherichia coli MS 187-1]
 gi|300838999|gb|EFK66759.1| signal recognition particle protein [Escherichia coli MS 124-1]
 gi|300846590|gb|EFK74350.1| signal recognition particle protein [Escherichia coli MS 78-1]
 gi|301077597|gb|EFK92403.1| signal recognition particle protein [Escherichia coli MS 146-1]
 gi|305854510|gb|EFM54948.1| signal recognition particle protein [Escherichia coli NC101]
 gi|306905507|gb|EFN36041.1| signal recognition particle protein [Escherichia coli W]
 gi|307554623|gb|ADN47398.1| GTP-binding export factor binds to signal sequence, GTP and RNA
           [Escherichia coli ABU 83972]
 gi|307625840|gb|ADN70144.1| signal recognition particle protein [Escherichia coli UM146]
 gi|308122026|gb|EFO59288.1| signal recognition particle protein [Escherichia coli MS 145-7]
 gi|309702990|emb|CBJ02321.1| signal recognition particle protein [Escherichia coli ETEC H10407]
 gi|310333090|gb|EFQ00304.1| signal recognition particle protein [Escherichia coli 1827-70]
 gi|312289789|gb|EFR17678.1| signal recognition particle protein [Escherichia coli 2362-75]
 gi|312947182|gb|ADR28009.1| signal recognition particle protein [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315061924|gb|ADT76251.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli W]
 gi|315137228|dbj|BAJ44387.1| signal recognition particle protein [Escherichia coli DH1]
 gi|315253137|gb|EFU33105.1| signal recognition particle protein [Escherichia coli MS 85-1]
 gi|315284814|gb|EFU44259.1| signal recognition particle protein [Escherichia coli MS 110-3]
 gi|315290949|gb|EFU50314.1| signal recognition particle protein [Escherichia coli MS 153-1]
 gi|315298671|gb|EFU57925.1| signal recognition particle protein [Escherichia coli MS 16-3]
 gi|315615309|gb|EFU95944.1| signal recognition particle protein [Escherichia coli 3431]
 gi|320177027|gb|EFW52048.1| Signal recognition particle, subunit Ffh SRP54 [Shigella
           dysenteriae CDC 74-1112]
 gi|320182476|gb|EFW57370.1| Signal recognition particle, subunit Ffh SRP54 [Shigella boydii
           ATCC 9905]
 gi|320183091|gb|EFW57953.1| Signal recognition particle, subunit Ffh SRP54 [Shigella flexneri
           CDC 796-83]
 gi|320188945|gb|EFW63604.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli
           O157:H7 str. EC1212]
 gi|320194774|gb|EFW69403.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli
           WV_060327]
 gi|320198383|gb|EFW72985.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli
           EC4100B]
 gi|320640792|gb|EFX10290.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           G5101]
 gi|320646137|gb|EFX15082.1| signal recognition particle protein [Escherichia coli O157:H- str.
           493-89]
 gi|320651434|gb|EFX19835.1| signal recognition particle protein [Escherichia coli O157:H- str.
           H 2687]
 gi|320657039|gb|EFX24862.1| signal recognition particle protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662703|gb|EFX30047.1| signal recognition particle protein [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667520|gb|EFX34444.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323159129|gb|EFZ45122.1| signal recognition particle protein [Escherichia coli E128010]
 gi|323167733|gb|EFZ53428.1| signal recognition particle protein [Shigella sonnei 53G]
 gi|323173073|gb|EFZ58704.1| signal recognition particle protein [Escherichia coli LT-68]
 gi|323184515|gb|EFZ69889.1| signal recognition particle protein [Escherichia coli 1357]
 gi|323188398|gb|EFZ73687.1| signal recognition particle protein [Escherichia coli RN587/1]
 gi|323377496|gb|ADX49764.1| signal recognition particle protein [Escherichia coli KO11]
 gi|323935676|gb|EGB31993.1| signal recognition particle protein [Escherichia coli E1520]
 gi|323941372|gb|EGB37556.1| signal recognition particle protein [Escherichia coli E482]
 gi|323946263|gb|EGB42296.1| signal recognition particle protein [Escherichia coli H120]
 gi|323951191|gb|EGB47067.1| signal recognition particle protein [Escherichia coli H252]
 gi|323957023|gb|EGB52749.1| signal recognition particle protein [Escherichia coli H263]
 gi|323960532|gb|EGB56161.1| signal recognition particle protein [Escherichia coli H489]
 gi|323963919|gb|EGB59412.1| signal recognition particle protein [Escherichia coli M863]
 gi|323971447|gb|EGB66683.1| signal recognition particle protein [Escherichia coli TA007]
 gi|323978481|gb|EGB73564.1| signal recognition particle protein [Escherichia coli TW10509]
 gi|324012448|gb|EGB81667.1| signal recognition particle protein [Escherichia coli MS 60-1]
 gi|324016586|gb|EGB85805.1| signal recognition particle protein [Escherichia coli MS 117-3]
 gi|324111246|gb|EGC05228.1| signal recognition particle protein [Escherichia fergusonii B253]
 gi|324120067|gb|EGC13943.1| signal recognition particle protein [Escherichia coli E1167]
 gi|325496322|gb|EGC94181.1| signal recognition particle protein [Escherichia fergusonii ECD227]
 gi|326344362|gb|EGD68120.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli
           O157:H7 str. 1125]
 gi|326347731|gb|EGD71448.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli
           O157:H7 str. 1044]
 gi|327252315|gb|EGE63987.1| signal recognition particle protein [Escherichia coli STEC_7v]
 gi|330912373|gb|EGH40883.1| signal recognition particle, subunit Ffh SRP54 [Escherichia coli
           AA86]
 gi|331036797|gb|EGI09021.1| signal recognition particle protein [Escherichia coli H736]
 gi|331042099|gb|EGI14241.1| signal recognition particle protein [Escherichia coli M605]
 gi|331047449|gb|EGI19526.1| signal recognition particle protein [Escherichia coli M718]
 gi|331053340|gb|EGI25369.1| signal recognition particle protein [Escherichia coli TA206]
 gi|331058632|gb|EGI30610.1| signal recognition particle protein [Escherichia coli TA143]
 gi|331063028|gb|EGI34941.1| signal recognition particle protein [Escherichia coli TA271]
 gi|331068789|gb|EGI40182.1| signal recognition particle protein [Escherichia coli TA280]
 gi|331073431|gb|EGI44752.1| signal recognition particle protein [Escherichia coli H591]
 gi|331077881|gb|EGI49087.1| signal recognition particle protein [Escherichia coli H299]
 gi|332088118|gb|EGI93243.1| signal recognition particle protein [Shigella boydii 5216-82]
 gi|332089181|gb|EGI94288.1| signal recognition particle protein [Shigella dysenteriae 155-74]
 gi|332092111|gb|EGI97189.1| signal recognition particle protein [Shigella boydii 3594-74]
 gi|332103047|gb|EGJ06393.1| signal recognition particle protein Ffh [Shigella sp. D9]
 gi|332344479|gb|AEE57813.1| signal recognition particle protein [Escherichia coli UMNK88]
          Length = 453

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|126665078|ref|ZP_01736061.1| signal recognition particle protein [Marinobacter sp. ELB17]
 gi|126630448|gb|EBA01063.1| signal recognition particle protein [Marinobacter sp. ELB17]
          Length = 461

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 157/307 (51%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  I    RL +D +++ L ++   L+ +D+ + V +  VE +  +   
Sbjct: 2   FENLQDRLSGSLRKITGQARLTEDNIKDTLREVRMALLEADVALPVVKDFVESVRQRAIG 61

Query: 77  KDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           ++V  QR L         V + + +++   +   N   +  P VI++ G+ G GKTT + 
Sbjct: 62  QEV--QRSLTPGQVFVKVVQQELERVMGEANTGLNLSVTP-PAVIMMAGLQGAGKTTTVA 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL++ + +   K VM+ + D +R AAI QL+  A+    +F  S    D  A+A  A   
Sbjct: 119 KLARFLKERQKKSVMVVSADIYRPAAIKQLETLANEVGVEFFPSSADQDPVAIAEGAISA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K +DV+I+DTAGRL  + ++M  I ++   +K      P   L V+DA TGQ+A   
Sbjct: 179 ARKKHIDVVILDTAGRLAIDEMMMGEISRLHAAVK------PIETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+++TK DG ARGG  + +      P+ FLGVGE  + LEPF     ++
Sbjct: 233 AKAFNEALPLTGVVLTKTDGDARGGAALSVRHITGKPIKFLGVGEKSDALEPFHPDRVAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|119719417|ref|YP_919912.1| GTP-binding signal recognition particle [Thermofilum pendens Hrk 5]
 gi|119524537|gb|ABL77909.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermofilum
           pendens Hrk 5]
          Length = 431

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 145/289 (50%), Gaps = 19/289 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVA--------VAQKIVEELLTKRYAKDVSVQRVLY 86
           ++ SR +D  +RE L+  L+++D+ V         + ++  EE     ++K   + ++LY
Sbjct: 20  LLDSREVDLVIRE-LQRALLKADVDVGLVLSVSERIKKRFFEEEQPPGFSKKEVLVKILY 78

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           +  EL++  L+   +      S  P  ++ VG+ G GKTT + K++      G +V + A
Sbjct: 79  E--ELVN--LLGGEETPELKVSSTPFKVMFVGLEGSGKTTTVAKVANYYKRKGYRVGVVA 134

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DT+R  A +QL+  A++    F       DA +LA    K    K + +++IDTAGR  
Sbjct: 135 ADTYRPGAYEQLRSLAEKVGVPFYGDPQERDAVSLALRGVKVLSDKGIQMILIDTAGRHK 194

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
           +   LM  +  + R +K      P +V+ V+DAT G    RQ   F        +I+ KM
Sbjct: 195 DEEALMEEVKTLYREVK------PDAVVLVVDATQGSAVARQARAFQEAMPFGYVIVAKM 248

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG+A+GGG +  V + K  V F+G GE I DLE F  K F A + G  D
Sbjct: 249 DGSAKGGGALSAVASSKARVIFIGTGEKIEDLEEFNPKKFVARLLGMPD 297


>gi|281412663|ref|YP_003346742.1| signal recognition particle protein [Thermotoga naphthophila
           RKU-10]
 gi|281373766|gb|ADA67328.1| signal recognition particle protein [Thermotoga naphthophila
           RKU-10]
          Length = 433

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 149/285 (52%), Gaps = 15/285 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           I+ + + D +RE ++  L+ +D+   V ++ V+ +L K   ++V       Q+ +  V +
Sbjct: 22  ITEKNVKDAIRE-VKLSLLEADVNYKVVKEFVDHVLQKALGEEVLRSLTPDQQFIKIVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + +++   ++P      HRP  I++VG+ G GKTT   KL+K +   G   +L A D +
Sbjct: 81  ELVRIMGEKNEPLR--LVHRPAPIMMVGLQGSGKTTTCAKLAKLLKKEGRNPLLVAADLY 138

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AA+DQL    ++   + V  +       +  EA   A++   D+LI+DTAGRLH +  
Sbjct: 139 RPAAVDQLVKLGNQIGVN-VVHDYNKTPVEIVKEAVDVAESTGKDILIVDTAGRLHIDEE 197

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M  + ++ ++L       P  +L V+DA  GQ+A+   ++F      TG ++TKMDG A
Sbjct: 198 MMKELEEIKKILN------PDEILLVVDAMMGQDAVNTAKVFDERLDLTGFVVTKMDGDA 251

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG ++ I      PV F+G  E I+ LEPF     +  I G  D
Sbjct: 252 RGGVILSIKYVTGKPVKFIGTSEKIDGLEPFHPDRIANRILGMGD 296


>gi|195939662|ref|ZP_03085044.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4024]
          Length = 453

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|297517102|ref|ZP_06935488.1| signal recognition particle protein [Escherichia coli OP50]
          Length = 453

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMVLLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|183597522|ref|ZP_02959015.1| hypothetical protein PROSTU_00796 [Providencia stuartii ATCC 25827]
 gi|188023168|gb|EDU61208.1| hypothetical protein PROSTU_00796 [Providencia stuartii ATCC 25827]
          Length = 453

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 163/306 (53%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL DD +++ L ++   L+ +D+ + V ++ ++++      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVREFIQKVKESAVG 61

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVILVVGVNGVGKTTVIGK 130
           +DV+  + L    E I  +   L++    +       +  P V+L+ G+ G GKTT + K
Sbjct: 62  QDVN--KSLTPGQEFIKIVQNELTRAMGEENHQLNLSAQPPAVVLMAGLQGAGKTTSVAK 119

Query: 131 LSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +   K +L  + D +R AAI QL+  A+    DF  S++    AA+  +A K A
Sbjct: 120 LGKLLKEKQKKKVLVVSADVYRPAAIKQLETLAETVGIDFFPSDVKEKPAAIVQKALKHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q +  DVL++DTAGRLH +  +M  I ++ R++K      P   L V+DA TGQ+A    
Sbjct: 180 QLQFYDVLLVDTAGRLHVDEAMMEEIQEVHRIIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF  +  ++ 
Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRAITGKPIKFLGVGEKTDALEPFHPERVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|150866311|ref|XP_001385860.2| Signal recognition particle 54 kDa protein [Scheffersomyces
           stipitis CBS 6054]
 gi|149387567|gb|ABN67831.2| Signal recognition particle 54 kDa protein [Scheffersomyces
           stipitis CBS 6054]
          Length = 561

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 109/207 (52%), Gaps = 12/207 (5%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           H+I+ VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A + S  +  
Sbjct: 118 HIIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKASIPYYG 177

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPH 228
           S +  D   +AYE   + +++K D++I+DT+GR      L   M  IG+MI+        
Sbjct: 178 SYLEQDPVKIAYEGVTKFRSEKFDIIIVDTSGRHRQEHQLFQEMVQIGEMIQ-------- 229

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   + V+D + GQ A  Q + F   +    +I+TKMDG A+GGG I  V   K P+ F
Sbjct: 230 -PTQTIMVMDGSIGQAAESQAKAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVF 288

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE I DLE F    F + + G  D
Sbjct: 289 IGTGEHIGDLEIFKPTTFISKLLGIGD 315


>gi|293609099|ref|ZP_06691402.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829672|gb|EFF88034.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325121126|gb|ADY80649.1| 4.5S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 470

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 160/295 (54%), Gaps = 25/295 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127
           ++V  Q        +++YD    + KM+   ++    D S +P V+ L+ G+ G GKTT 
Sbjct: 62  QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116

Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL++ + +    KVM  + D +R AAI QL+  ++   A F+ S+       +   A 
Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSNEVGAGFIPSDPSEKPIDIVNRAI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+ +  DVLI+DTAGRLH ++ +M  I ++   +K      P   L V+DA TGQ+A 
Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDADMMDEIKELHAAVK------PTETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
              + F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF
Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPF 285


>gi|280987222|gb|ADA00385.1| signal recognition particle protein SRP [Anabaena sp. 90]
          Length = 482

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 147/293 (50%), Gaps = 25/293 (8%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D IS   + D +RE +   L+ +D+ + V +  + E+ TK    +V           +++
Sbjct: 20  DKISQSNIQDALRE-VRRALLEADVNLQVVKDFISEVETKAQGAEVIAGVRPDQQFIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL+     + + +  V+L+ G+ G GKTT   KL+  +       
Sbjct: 79  YD--ELVQVMGEENVPLA-----EVAGKTTVVLMAGLQGTGKTTATAKLALHLRKQDRSC 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A D +R AAIDQL     +         I +D   +A +  ++A+A+ ++ +IIDTA
Sbjct: 132 LLVATDIYRPAAIDQLITLGKQIDVPVFELGIAADPVEIARQGVERARAEGINTVIIDTA 191

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL  +  +MA + ++  V++      P   L V+DA TGQ A      FH   G TG I
Sbjct: 192 GRLQIDEDMMAELARIKEVVQ------PDETLLVVDAMTGQEAANLTRTFHNQIGITGAI 245

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +TKMDG +RGG  + +      P+ F+GVGE +  L+PF     ++ I G  D
Sbjct: 246 LTKMDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298


>gi|15237580|ref|NP_196014.1| CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT);
           7S RNA binding / GTP binding / mRNA binding / signal
           sequence binding [Arabidopsis thaliana]
 gi|586038|sp|P37107|SR54C_ARATH RecName: Full=Signal recognition particle 54 kDa protein,
           chloroplastic; Short=54 chloroplast protein; Short=54CP;
           Short=SRP54; AltName: Full=FFC; Flags: Precursor
 gi|396701|emb|CAA79981.1| 54CP [Arabidopsis thaliana]
 gi|7406404|emb|CAB85514.1| signal recognition particle 54CP protein precursor [Arabidopsis
           thaliana]
 gi|15293131|gb|AAK93676.1| putative signal recognition particle 54CP protein precursor
           [Arabidopsis thaliana]
 gi|24030445|gb|AAN41376.1| putative signal recognition particle 54CP protein precursor
           [Arabidopsis thaliana]
 gi|332003291|gb|AED90674.1| signal recognition particle subunit [Arabidopsis thaliana]
          Length = 564

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 145/285 (50%), Gaps = 23/285 (8%)

Query: 43  DGVREELEDL---LIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSEL 91
           D + E + D+   L+ +D+ + V ++ V+ +        + +    D  + ++++D  EL
Sbjct: 101 DNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVKIVHD--EL 158

Query: 92  IHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +  M   +S+     F+   P VIL+ G+ GVGKTTV  KL+  +   G   ML AGD +
Sbjct: 159 VKLMGGEVSE---LQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVY 215

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAIDQL I  ++       +      A +A +  K+A+   VDV+I+DTAGRL  +  
Sbjct: 216 RPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKG 275

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M  +  + + L       P  VL V+DA TGQ A   V  F+   G TG I+TK+DG +
Sbjct: 276 MMDELKDVKKFLN------PTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDS 329

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + +      P+  +G GE + DLEPF     +  I G  D
Sbjct: 330 RGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 374


>gi|325131021|gb|EGC53748.1| signal recognition particle protein [Neisseria meningitidis
           OX99.30304]
          Length = 456

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|329847289|ref|ZP_08262317.1| signal recognition particle protein [Asticcacaulis biprosthecum
           C19]
 gi|328842352|gb|EGF91921.1| signal recognition particle protein [Asticcacaulis biprosthecum
           C19]
          Length = 521

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 155/291 (53%), Gaps = 21/291 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---------EELLTKRYAKDVSVQRVL 85
           ++S + +D+ +RE +   L+ +D+ + V ++ +         EE++      D  V +++
Sbjct: 21  VLSEKDVDEALRE-VRVALLEADVALPVVRQFMTKAKELATGEEIIKAVKPAD-QVVKIV 78

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VML 144
           YD   LI  +     +P N + +  P VI++ G+ G GKTT   KL+ ++S    K VM+
Sbjct: 79  YD--GLIDMLGGEEPEPLNLN-AVPPAVIMMAGLQGSGKTTTSAKLALRLSKFDRKKVMM 135

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           A+ DT R AA++QLK+ A++   DF+    G  A  +A  A + A+ +  DVLI+DTAGR
Sbjct: 136 ASLDTRRPAAMEQLKLLAEQVGVDFLPIVAGQSATDIARRALQAAKIQGFDVLILDTAGR 195

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
              +  LM+   ++ R+        P     V D+ TGQ+A+R    FH     TGLI+T
Sbjct: 196 TTLDEALMSEAAEIARIAN------PIETFLVADSLTGQDAVRTATAFHERLPLTGLILT 249

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + DG ARGG ++ +     +P+ FLG GE +  L+ F A+  +  I G  D
Sbjct: 250 RADGDARGGAMLSMRAVTGLPIKFLGAGEKVEALDVFDARRVAGRILGQGD 300


>gi|261202392|ref|XP_002628410.1| signal recognition particle protein SRP54 [Ajellomyces dermatitidis
           SLH14081]
 gi|239590507|gb|EEQ73088.1| signal recognition particle protein SRP54 [Ajellomyces dermatitidis
           SLH14081]
          Length = 530

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 146/301 (48%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVNDLTRSNNLDEQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPFSSLPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P ++PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKTVFD--QLV-ALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ 
Sbjct: 125 YQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR      L   + ++   +K      P   + VLD T GQ A  Q   F A
Sbjct: 185 DIIIVDTSGRHKQEEDLFTEMTQIQTAIK------PDQTILVLDGTIGQAAESQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG+A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGSAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|82777969|ref|YP_404318.1| signal recognition particle protein [Shigella dysenteriae Sd197]
 gi|309784646|ref|ZP_07679281.1| signal recognition particle protein [Shigella dysenteriae 1617]
 gi|81242117|gb|ABB62827.1| GTP-binding export factor [Shigella dysenteriae Sd197]
 gi|308927543|gb|EFP73015.1| signal recognition particle protein [Shigella dysenteriae 1617]
          Length = 453

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQRPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|52424574|ref|YP_087711.1| Ffh protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306626|gb|AAU37126.1| Ffh protein [Mannheimia succiniciproducens MBEL55E]
          Length = 463

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 160/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V + +   +   ++  N   S  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQKELESAMGESNESLNL-ASQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A    ADF  S++  +   +A  A   A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLETLAQSVDADFFPSDVKKNPVDIAKAALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDGEMMDEIKRIHEVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|121635570|ref|YP_975815.1| signal recognition particle protein [Neisseria meningitidis FAM18]
 gi|120867276|emb|CAM11047.1| signal recognition particle protein [Neisseria meningitidis FAM18]
 gi|325137122|gb|EGC59718.1| signal recognition particle protein [Neisseria meningitidis M0579]
          Length = 456

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|300825114|ref|ZP_07105207.1| signal recognition particle protein [Escherichia coli MS 119-7]
 gi|300522386|gb|EFK43455.1| signal recognition particle protein [Escherichia coli MS 119-7]
          Length = 440

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/212 (37%), Positives = 117/212 (55%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A++  
Sbjct: 84  AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 143

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++G     +   A K+A+ K  DVL++DTAGRLH +  +M  I ++        
Sbjct: 144 VDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 195

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 196 -HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 254

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE    LEPF     ++ I G  D
Sbjct: 255 KPIKFLGVGEKTEALEPFHPDRIASRILGMGD 286


>gi|126460331|ref|YP_001056609.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pyrobaculum
           calidifontis JCM 11548]
 gi|171855105|sp|A3MWX6|SRP54_PYRCJ RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|126250052|gb|ABO09143.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pyrobaculum
           calidifontis JCM 11548]
          Length = 431

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           VLY+  EL+   L+   +P  +  + +P+V+L++GV G GKTT   KL+K ++  G KV 
Sbjct: 75  VLYE--ELVK--LLGGEQPAEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKYLAKRGYKVG 130

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L   DT R AA DQLK  A++    F     G +A  +A    +    K +DV+IIDTAG
Sbjct: 131 LVETDTIRPAAFDQLKQLAEKIGVPFYGERDGKNAVEIAVRGVQNF--KNMDVVIIDTAG 188

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R  N   L+  +  +   +K      P  V  V+DAT G+ A  Q E F        +I+
Sbjct: 189 RHRNEEELLKEVKAIYDAVK------PDEVFLVIDATVGKLAAAQAEAFMKYLPIHSVII 242

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TKMD TARGGG +  V      V F+GVGE +++ E F  + F A + G  D
Sbjct: 243 TKMDSTARGGGALAAVAKTGARVKFIGVGEDVDEFELFNPRKFVARVLGMGD 294


>gi|58267554|ref|XP_570933.1| Signal recognition particle 54 kDa protein [Cryptococcus neoformans
           var. neoformans JEC21]
 gi|134112227|ref|XP_775089.1| hypothetical protein CNBE3630 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257741|gb|EAL20442.1| hypothetical protein CNBE3630 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227167|gb|AAW43626.1| Signal recognition particle 54 kDa protein, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 591

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 142/290 (48%), Gaps = 30/290 (10%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKI--------------VEELLTKRYAKDVSVQRVLYDV 88
           DGV +EL   L+ SD+ V +   +               E+   +   K   VQ+ ++D 
Sbjct: 29  DGVLKELCAALLESDVNVKLVASLRTKVKTKVKKSLEESEKAGGREANKKNVVQKAVFD- 87

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            EL+  ++ P ++P+      + +V++ VG+ G GKTT   KL+      G +  L   D
Sbjct: 88  -ELVA-LVDPGTEPYK-PVKGKTNVLMAVGIQGAGKTTTCTKLAVHYQRRGFRTCLVCAD 144

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+ A DQLK  A +    F  S   +D  A+A    ++ + ++ DV+I+DT+GR    
Sbjct: 145 TFRAGAFDQLKQNATKAKIPFYGSYTETDPVAIASLGVEKFRKERFDVIIVDTSGRHKQE 204

Query: 209 SIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           S L   M  IG  ++         P   L VLDA+ GQ A  Q   F   A    +I+TK
Sbjct: 205 SELFEEMVAIGAAVK---------PDMTLMVLDASIGQAAEGQSRAFKDSADFGAIIVTK 255

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +DG A+GGG I  V   K P+ FLG GE +NDLE F  + F + + G  D
Sbjct: 256 LDGHAKGGGAISAVAATKTPIIFLGTGEHLNDLERFAPQPFISKLLGMGD 305


>gi|325479005|gb|EGC82106.1| signal recognition particle protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 445

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 157/305 (51%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F   S +L+E +  +     +S + +D  +RE +   L+ +D+   V +  V+ +  +  
Sbjct: 3   FEGLSERLQETLGKLTGKGKLSEKDIDAAMRE-IRLSLLEADVNYKVVKDFVKTIKERSL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +   ++  S  PH++++VG+ G GKTT  GK
Sbjct: 62  GQDVMTSLSPGQMVVKIVNEELTALMGKENSKLDFKGST-PHIVMMVGLQGSGKTTHSGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+ +     ML A D +R AAI+QLK+   +T+   V  +   D    A EA   A+
Sbjct: 121 LALKLKNENRNPMLTALDIYRPAAIEQLKVVG-KTAGVEVFDKDKQDPVKTAKEAKDYAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   DV+I+DTAGRL  ++ LM  +  +   +       P  +L V+DA TGQ A+   +
Sbjct: 180 SNNHDVIILDTAGRLQIDTDLMDELKNIKEAVN------PDEILLVVDAMTGQEAVNVAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + I      P+ F+GVGE + DLEPF     +  I
Sbjct: 234 TFDEYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGVGEKLEDLEPFHPDRMANRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|158337260|ref|YP_001518435.1| signal recognition particle protein [Acaryochloris marina
           MBIC11017]
 gi|158307501|gb|ABW29118.1| signal recognition particle protein [Acaryochloris marina
           MBIC11017]
          Length = 476

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 144/289 (49%), Gaps = 17/289 (5%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--EL 91
           D IS   + D +RE +   L+ +D+ + V +  +EE+       +V +  V  D    ++
Sbjct: 20  DKISESNIQDALRE-VRRALLEADVNLQVVKDFIEEVRESALGAEV-ITGVQPDQQFIKI 77

Query: 92  IHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +H  L+ +    N   +     P VIL+ G+ G GKTT   KL+  +       +L A D
Sbjct: 78  VHDQLVEIMGATNEPLAESNKPPTVILMAGLQGTGKTTATAKLALHLRKQEQTSLLVATD 137

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            +R AAIDQL    ++   D    ++G+DA    +A +    A+ + VD +I+DTAGRL 
Sbjct: 138 IYRPAAIDQLVTLGEQI--DVPVFQLGTDANPVEIARQGLAAAREQNVDTVIVDTAGRLQ 195

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  +M+ +  + + +K      P   L V+DA TGQ A    + FH   G TG I+TKM
Sbjct: 196 IDPEMMSELADIKKAIK------PDETLLVVDAMTGQEAANLTQTFHDQIGITGAILTKM 249

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + I      P+ F+GVGE +  L+PF     ++ I G  D
Sbjct: 250 DGDTRGGAALSIRQISGKPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298


>gi|145219743|ref|YP_001130452.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205907|gb|ABP36950.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium
           phaeovibrioides DSM 265]
          Length = 449

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 138/268 (51%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +K+VE++  K   + V       Q ++  VS+ + +++    KP     
Sbjct: 38  LLGADVNYKVVKKLVEDVRQKSLGEGVIKSVSPAQMIVKIVSDELTELMGGEQKPLALSS 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V++V G+ G GKTT   KL+K++  +G   +L A D +R AA+DQLK      S 
Sbjct: 98  SRLPAVVMVAGLQGSGKTTFAAKLAKRLKKSGRNPLLVAADVYRPAAVDQLKTLGAEVSV 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                E   DA  +A +  + A+A   DVLI+DTAGRL  +  +MA    +   LK    
Sbjct: 158 PVFSIE-EKDAMKVAMQGLEAAKAGAHDVLIVDTAGRLQIDDAMMAEAEALKNALK---- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+  GQ A+   + F+      G+++TK+DG +RGG  + I    + P+ 
Sbjct: 213 --PDELLFVVDSMMGQEAVNTAKAFNDRLDFDGVVLTKLDGDSRGGAALSIRHVVEKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+ VGE ++DL+ F     +  I G  D
Sbjct: 271 FMSVGEKVDDLDQFYPDRMAQRILGMGD 298


>gi|321259271|ref|XP_003194356.1| signal recognition particle 54 kDa protein [Cryptococcus gattii
           WM276]
 gi|317460827|gb|ADV22569.1| Signal recognition particle 54 kDa protein, putative [Cryptococcus
           gattii WM276]
          Length = 590

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 143/294 (48%), Gaps = 38/294 (12%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK------------------DVSVQRV 84
           D V +EL   L+ SD+ V    K+V  L TK  AK                     VQ+ 
Sbjct: 29  DSVLKELCAALLESDVNV----KLVASLRTKVKAKVKKSLEESEKAGGREANKKNVVQKA 84

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           ++D  EL+  ++ P ++P+      + +V++ VG+ G GKTT   KL+      G +  L
Sbjct: 85  VFD--ELVA-LVDPGTEPYK-PVKGKTNVLMAVGIQGAGKTTTCTKLAVHYQRRGFRTCL 140

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
              DTFR+ A DQLK  A +    F  S   +D  A+A    ++ + ++ DV+I+DT+GR
Sbjct: 141 VCADTFRAGAFDQLKQNATKAKIPFYGSYTETDPVAIASLGVEKFRKERFDVIIVDTSGR 200

Query: 205 LHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
               S L   M  IG  ++         P   L VLDA+ GQ A  Q   F   A    +
Sbjct: 201 HKQESELFEEMVAIGAAVK---------PDMTLMVLDASIGQAAEGQSRAFKDSADFGAI 251

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I+TK+DG A+GGG I  V   K P+ FLG GE +NDLE F  + F + + G  D
Sbjct: 252 IVTKLDGHAKGGGAISAVAATKTPIIFLGTGEHLNDLERFAPQPFISKLLGMGD 305


>gi|20807909|ref|NP_623080.1| Signal recognition particle GTPase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516476|gb|AAM24684.1| Signal recognition particle GTPase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 447

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 139/268 (51%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  +  +  K   ++V       Q+V+  V E + K++  +    N   
Sbjct: 40  LLEADVNFKVVKDFINSVTEKALGQEVMESLTPAQQVIKIVHEELIKLMGSVESRLNLG- 98

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P VI++VG+ G GKTT  GKL+  +   G   +L A DT R AAI QL++     + 
Sbjct: 99  SKVPAVIMMVGLQGSGKTTACGKLANLLKKQGKNPLLVACDTVRPAAIKQLQVLGANINV 158

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    D A +A  +   A++  VDV+IIDTAGRLH +  LM    +++R+ + + P
Sbjct: 159 PVFTMGDKVDTADIAKASIDYAKSHNVDVVIIDTAGRLHIDDELME---ELVRIKEAVHP 215

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
                +L V DA TGQ+A+     F+     TG+I+TK+DG  RGG  + I    + P+ 
Sbjct: 216 D---EILLVADAMTGQDAVNVASSFNERLDITGVILTKLDGDTRGGAALSIKAVTQKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++G+GE + D+EPF     ++ I G  D
Sbjct: 273 YVGIGEKLGDIEPFYPDRMASRILGMGD 300


>gi|217967920|ref|YP_002353426.1| signal recognition particle protein [Dictyoglomus turgidum DSM
           6724]
 gi|217337019|gb|ACK42812.1| signal recognition particle protein [Dictyoglomus turgidum DSM
           6724]
          Length = 436

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 150/288 (52%), Gaps = 21/288 (7%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           ++ + +++ +RE +   L+ +D    V ++++  + TK   +DV         + R+LY 
Sbjct: 22  LTEKDIEEALRE-VRQALLEADAHYKVVKELLNNVKTKALQEDVLKSVTPAEQIIRILY- 79

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             EL++ +L       N     +P +ILVVG+ G GKTT   KL+ ++S    +V+L   
Sbjct: 80  -YELLN-ILGGEKVDLNLG-DKKPGIILVVGLQGSGKTTTCAKLAYRLSQEQRRVLLVGA 136

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR AA  QL+I  ++          GS+   +   A K A+ K  DV+I+DT GRLH 
Sbjct: 137 DTFRPAAGKQLQILGEKIKVPVYID--GSNPFEIIDGALKVAREKFSDVMIVDTTGRLHI 194

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  +M  + ++ +       + P  +L V+D  TGQ+A+   E F+     TG+I+TKMD
Sbjct: 195 DEEMMNELSELNK------RYHPSEILLVVDGMTGQDAVNIAEKFNEKLPLTGVILTKMD 248

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G ARGG  + +      P+ F+GVGE I DLE F     ++ I G  D
Sbjct: 249 GDARGGAALSVKAITGKPIKFIGVGEKIEDLEYFYPDRLASRILGMGD 296


>gi|19075709|ref|NP_588209.1| signal recognition particle subunit Srp54 [Schizosaccharomyces
           pombe 972h-]
 gi|134887|sp|P21565|SRP54_SCHPO RecName: Full=Signal recognition particle 54 kDa protein homolog;
           Short=SRP54
 gi|5096|emb|CAA35951.1| signal recognition particle [Schizosaccharomyces pombe]
 gi|173491|gb|AAA35344.1| signal recognition particle 54 kDa subunit [Schizosaccharomyces
           pombe]
 gi|4678686|emb|CAB41226.1| signal recognition particle subunit Srp54 [Schizosaccharomyces
           pombe]
          Length = 522

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 138/277 (49%), Gaps = 24/277 (8%)

Query: 45  VREELEDLLIR--------SDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDVSELI 92
           V EEL D L++        +D+ V + Q++   +  K       + ++ +R+   V + +
Sbjct: 23  VNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRI---VQKAV 79

Query: 93  HKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
              L  L  P    F+    RP VI++VG+ G GKTT   KL+      GLK  L A DT
Sbjct: 80  FDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQLK  A +    +  S   +D   +A E   + +  + DV+I+DT+GR     
Sbjct: 140 FRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQ 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L A   +M+ +    D   P   + +LDA+ GQ A  Q + F   A    +I+TK+DG 
Sbjct: 200 ELFA---EMVEI---SDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A+GGG +  V   K P+ F+G GE INDLE F  + F
Sbjct: 254 AKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSF 290


>gi|239612234|gb|EEQ89221.1| signal recognition particle protein SRP54 [Ajellomyces dermatitidis
           ER-3]
 gi|327353181|gb|EGE82038.1| signal recognition particle protein [Ajellomyces dermatitidis ATCC
           18188]
          Length = 533

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 146/301 (48%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVNDLTRSNNLDEQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPFSSLPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P ++PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKTVFD--QLV-ALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ 
Sbjct: 125 YQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR      L   + ++   +K      P   + VLD T GQ A  Q   F A
Sbjct: 185 DIIIVDTSGRHKQEEDLFTEMTQIQTAIK------PDQTILVLDGTIGQAAESQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG+A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGSAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|222100122|ref|YP_002534690.1| Signal recognition particle protein [Thermotoga neapolitana DSM
           4359]
 gi|221572512|gb|ACM23324.1| Signal recognition particle protein [Thermotoga neapolitana DSM
           4359]
          Length = 433

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 148/285 (51%), Gaps = 15/285 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           I+ + + D VRE ++  L+ +D+   V ++ V+ +L K   ++V       Q+ +  V +
Sbjct: 22  ITEKNVKDAVRE-VKLSLLEADVNYKVVKEFVDHVLQKALGEEVLKSLTPDQQFIKIVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + K++   ++P      HRP  I++VG+ G GKTT   KL+K +   G   +L A D +
Sbjct: 81  ELIKIMGEKNEPLR--LIHRPAPIMMVGLQGSGKTTTCAKLAKLLKKEGRNPLLVAADLY 138

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AA+DQL    ++   + V  +       +  E  ++A+    DVLI+DTAGRLH +  
Sbjct: 139 RPAAVDQLVKLGNQIGVN-VVHDYNKSPVEIVKEGIQEAERTGKDVLIVDTAGRLHIDED 197

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M  + ++  +L       P  +L V+DA  GQ+A+   ++F      TG ++TKMDG A
Sbjct: 198 MMRELEEIKAILN------PDEILLVVDAMMGQDAVNTAKVFDERLDLTGFVVTKMDGDA 251

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG ++ I      PV F+G  E ++ LEPF     +  I G  D
Sbjct: 252 RGGVILSIKYVTGKPVKFIGTSEKLDGLEPFHPDRIANRILGMGD 296


>gi|148270357|ref|YP_001244817.1| signal recognition particle protein [Thermotoga petrophila RKU-1]
 gi|147735901|gb|ABQ47241.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermotoga
           petrophila RKU-1]
          Length = 433

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 149/285 (52%), Gaps = 15/285 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           I+ + + D +RE ++  L+ +D+   V ++ V+ +L K   ++V       Q+ +  V +
Sbjct: 22  ITEKNVKDAIRE-VKLSLLEADVNYKVVKEFVDHVLQKALGEEVLRSLTPDQQFIKIVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + +++   ++P      HRP  I++VG+ G GKTT   KL+K +   G   +L A D +
Sbjct: 81  ELVRIMGEKNEPLR--LVHRPAPIMMVGLQGSGKTTTCAKLAKLLKKEGRNPLLVAADLY 138

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AA+DQL    ++   + V  +       +  EA   A++   D+LI+DTAGRLH +  
Sbjct: 139 RPAAVDQLVKLGNQIGIN-VVHDYNKTPVEIVKEAVDVAESTGKDILIVDTAGRLHIDEE 197

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M  + ++ ++L       P  +L V+DA  GQ+A+   ++F      TG ++TKMDG A
Sbjct: 198 MMKELEEIKKILN------PDEILLVVDAMMGQDAVNTAKVFDERLDLTGFVVTKMDGDA 251

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG ++ I      PV F+G  E I+ LEPF     +  I G  D
Sbjct: 252 RGGVILSIKYVTGKPVKFIGTSEKIDGLEPFHPDRIANRILGMGD 296


>gi|224138482|ref|XP_002322825.1| predicted protein [Populus trichocarpa]
 gi|222867455|gb|EEF04586.1| predicted protein [Populus trichocarpa]
          Length = 576

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 156/309 (50%), Gaps = 23/309 (7%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----- 70
           +LT G  S   KLK    ++++   + + +R+ +   L+ +D+ + V ++ V+ +     
Sbjct: 92  QLTSGLESAWNKLKG--EEVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVQSVSDQAV 148

Query: 71  ---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
              L +    D  + ++++D  EL+  M   +S+     F+   P VIL+ G+ GVGKTT
Sbjct: 149 GVGLVRGVKPDQQLVKIVHD--ELVKLMGGEVSELV---FAKSAPTVILLAGLQGVGKTT 203

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           V  KL+  +   G   ML AGD +R AAIDQL I  ++              + +A +  
Sbjct: 204 VCAKLANYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTEGTDVKPSEIARKGL 263

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+ K +DV+I+DTAGRL  +  +M  +  +  +L       P  VL V+DA TGQ A 
Sbjct: 264 SEAKKKNIDVVIVDTAGRLQIDKGMMDELKDVKLILN------PTEVLLVVDAMTGQEAA 317

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF     
Sbjct: 318 ALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPNRM 377

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 378 AGRILGMGD 386


>gi|223042041|ref|ZP_03612218.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus minor 202]
 gi|223017158|gb|EEF15593.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus minor 202]
          Length = 362

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/206 (39%), Positives = 113/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV++ + D +R AAI QL+  A+    DF
Sbjct: 2   PAVILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDF 61

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             +E       +A  A K A+    DVLI+DTAGRLH +  +M  I ++  VL       
Sbjct: 62  FPTETSQKPVEIAEVALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------ 115

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L  +DA TGQ+A    + F+     TG+I+TK+DG ARGG  + I      P+ FL
Sbjct: 116 PIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFL 175

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE  + LEPF     ++ I G  D
Sbjct: 176 GVGEKTDALEPFHPDRIASRILGMGD 201


>gi|297810481|ref|XP_002873124.1| hypothetical protein ARALYDRAFT_487173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318961|gb|EFH49383.1| hypothetical protein ARALYDRAFT_487173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 562

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 161/318 (50%), Gaps = 28/318 (8%)

Query: 12  SWIR-----KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           S++R     +LT G  +   KLK    ++++   + + +R+ +   L+ +D+ + V ++ 
Sbjct: 69  SYVRAEMFGQLTGGLEAAWSKLKG--EEVLTKENIAEPMRD-IRRALLEADVSLPVVRRF 125

Query: 67  VEEL--------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVV 117
           V+ +        + +    D  + ++++D  EL+  M   +S+     F+   P VIL+ 
Sbjct: 126 VQSVSDQAVGMGVIRGVKPDQQLVKIVHD--ELVKLMGGEVSE---LQFAKSGPTVILLA 180

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G+ GVGKTTV  KL+  +   G   ML AGD +R AAIDQL I  ++       +     
Sbjct: 181 GLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVK 240

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A +A +  K+A+   VDV+I+DTAGRL  +  +M  +  + + L       P  VL V+
Sbjct: 241 PADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLN------PTEVLLVV 294

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQ A   V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + D
Sbjct: 295 DAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 354

Query: 298 LEPFVAKDFSAVITGCLD 315
           LEPF     +  I G  D
Sbjct: 355 LEPFYPDRMAGRILGMGD 372


>gi|238899329|ref|YP_002925012.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229467090|gb|ACQ68864.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 453

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 160/307 (52%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL ++ ++  L ++   L+ +D+ ++V +  ++ +  K+ A
Sbjct: 2   FNNLTERLSRTLRNISGRGRLTEENIKTSLREVRVALLDADVALSVVRDFIQRV--KKKA 59

Query: 77  KDVSVQRVLYDVSELI----HKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIG 129
               + + L    E I    ++M   + + FN +    +  P VIL+ G+ G GKTT + 
Sbjct: 60  MGHEINKSLTPGQEFIKIVKNEMTSAMGE-FNTELNLATQPPAVILMAGLQGAGKTTSVV 118

Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL K +++    KV+L + D +R AAI QL+  A   S +F  S    +   +  +A K 
Sbjct: 119 KLGKFITEKQKKKVLLVSVDVYRPAAIKQLETLAQSVSIEFFPSHFEENPVDIVTQALKH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRLH +  +M  I ++   L       P   L V+DA TGQ+A   
Sbjct: 179 AKLKFYDVLIVDTAGRLHVDENMMNEIKQLHLSLD------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+ V   TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF  +  ++
Sbjct: 233 AKAFNEVLPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPERIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|261346219|ref|ZP_05973863.1| signal recognition particle protein [Providencia rustigianii DSM
           4541]
 gi|282565525|gb|EFB71060.1| signal recognition particle protein [Providencia rustigianii DSM
           4541]
          Length = 453

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 163/306 (53%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL DD +++ L ++   L+ +D+ + V ++ ++++      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVREFIQKVKESAVG 61

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVILVVGVNGVGKTTVIGK 130
           +DV+  + L    E I  +   L++    +       +  P V+L+ G+ G GKTT + K
Sbjct: 62  QDVN--KSLTPGQEFIKIVQNELTRAMGEENHQLNLSAQPPAVVLMAGLQGAGKTTSVAK 119

Query: 131 LSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +   K +L  + D +R AAI QL+  A+  S DF  S+     A++  +A K A
Sbjct: 120 LGKLLKEKQKKKVLVVSADVYRPAAIKQLETLAEAVSIDFFPSDAQEKPASIVQKALKHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q +  DVL++DTAGRLH + ++M  I ++ R++       P   L V+DA TGQ+A    
Sbjct: 180 QLQFYDVLLVDTAGRLHVDEVMMEEIQEIHRIIN------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF  +  ++ 
Sbjct: 234 KAFNEALPLTGIVLTKVDGDARGGAALSIRAITGKPIKFLGVGEKTDALEPFHPERVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|15644313|ref|NP_229365.1| signal recognition particle protein [Thermotoga maritima MSB8]
 gi|170289017|ref|YP_001739255.1| signal recognition particle protein [Thermotoga sp. RQ2]
 gi|4982134|gb|AAD36632.1|AE001802_1 signal recognition particle protein [Thermotoga maritima MSB8]
 gi|170176520|gb|ACB09572.1| signal recognition particle protein [Thermotoga sp. RQ2]
          Length = 433

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 149/285 (52%), Gaps = 15/285 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           I+ + + D +RE ++  L+ +D+   V ++ V+ +L K   ++V       Q+ +  V +
Sbjct: 22  ITEKNVKDAIRE-VKLSLLEADVNYKVVKEFVDHVLQKALGEEVLRSLTPDQQFIKIVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + +++   ++P      HRP  I++VG+ G GKTT   KL+K +   G   +L A D +
Sbjct: 81  ELVRIMGEKNEPLR--LVHRPAPIMMVGLQGSGKTTTCAKLAKLLKKEGRNPLLVAADLY 138

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AA+DQL    ++   + V  +       +  EA   A++   DVLI+DTAGRLH +  
Sbjct: 139 RPAAVDQLVKLGNQIGVN-VVHDYNKTPVEIVKEAVDVAESTGKDVLIVDTAGRLHIDEE 197

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M  + ++ ++L       P  +L V+DA  GQ+A+   ++F      TG ++TKMDG A
Sbjct: 198 MMKELEEIKKILN------PDEILLVVDAMMGQDAVNTAKVFDERLDLTGFVVTKMDGDA 251

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG ++ I      PV F+G  E ++ LEPF     +  I G  D
Sbjct: 252 RGGVILSIKYVTGKPVKFIGTSEKLDGLEPFHPDRIANRILGMGD 296


>gi|284106929|ref|ZP_06386309.1| signal recognition particle-docking protein FtsY [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283830002|gb|EFC34279.1| signal recognition particle-docking protein FtsY [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 194

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 117/195 (60%), Gaps = 6/195 (3%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-LTKRYAKDVSVQRVLYDVSELIHKMLM 97
           R LD  V EE+E  L+ +D+GV  A +++E L  T       S+Q +   +++++  +  
Sbjct: 3   RGLDPEVLEEVEASLLGADVGVRTADRLLERLRATAGGDPRESIQELKRAMADILASVE- 61

Query: 98  PLSKPFNW--DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
             SKP +       +P VIL VGVNGVGKTT + KL+ ++   GL  +L A DTFR+AAI
Sbjct: 62  --SKPIDELVRTGPKPFVILAVGVNGVGKTTSMAKLAGRLRKQGLTPLLVAADTFRAAAI 119

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL++W  R  AD +    G+D +A+ ++    A+A+ VDV++IDTAGRLH    LM  +
Sbjct: 120 EQLEVWGKRIGADVIKHRQGADPSAVVFDGLAAAKARGVDVMLIDTAGRLHTKVNLMDEL 179

Query: 216 GKMIRVLKRLDPHAP 230
            KM RVL R  P AP
Sbjct: 180 KKMKRVLDREYPGAP 194


>gi|294657854|ref|XP_460149.2| DEHA2E19404p [Debaryomyces hansenii CBS767]
 gi|199432996|emb|CAG88422.2| DEHA2E19404p [Debaryomyces hansenii]
          Length = 541

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 110/204 (53%), Gaps = 6/204 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           HVI+ VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A ++S  +  
Sbjct: 94  HVIMFVGLQGAGKTTSCTKLAVYYKKRGYKVGLVCADTFRAGAFDQLKQNAIKSSIPYYG 153

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S I +D   +AYE   + + +K D++I+DT+GR      L     +MI++ + +    P 
Sbjct: 154 SYIETDPVKVAYEGVVKFKQEKFDIIIVDTSGRHKQEQSL---FNEMIQISEMI---VPT 207

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             + V+D + GQ A  Q + F   +    +I+TKMDG ARGGG I  V T K P+ F+G 
Sbjct: 208 QTIMVMDGSIGQAAESQAKAFKESSQFGSIILTKMDGHARGGGAISAVATTKTPIVFIGT 267

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE   DLE F    F + + G  D
Sbjct: 268 GEHATDLEIFKPTSFISKLLGIGD 291


>gi|261400534|ref|ZP_05986659.1| signal recognition particle protein [Neisseria lactamica ATCC
           23970]
 gi|269209797|gb|EEZ76252.1| signal recognition particle protein [Neisseria lactamica ATCC
           23970]
          Length = 456

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVADSLTPDQAFIGVVNKALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGIVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     +  I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRIAGRILGMGD 299


>gi|225848834|ref|YP_002728998.1| signal recognition particle protein [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643694|gb|ACN98744.1| signal recognition particle protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 442

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 155/309 (50%), Gaps = 24/309 (7%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           LT+ F+S   KL++     I  + LD+ +++ +   L+ +D+ V V +K + ++  K   
Sbjct: 5   LTEKFSSVIDKLRKAKK--IDEKTLDEALKD-IRTALLEADVNVDVVKKFIADIKQKVLG 61

Query: 77  KDV--------SVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++        +V +++YD +  I     P  L+KP        P +I++VG+ G GKTT
Sbjct: 62  QELIKGLSAGETVIKLIYDETINILGGEEPPTLAKP-----DKPPAIIMLVGLQGTGKTT 116

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL+K +   G +V +A+ D  R AA  QL   A          E   DA  L  +  
Sbjct: 117 TAGKLAKYLKSKGYRVGVASTDVRRPAAAKQLCTLAQSIDVPCFVDEQEKDALKLTEKVI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+ +    +I+DTAGRLH +  LM  + ++   +K      P  VL V DA  GQ A+
Sbjct: 177 EDAKKQGFSYIILDTAGRLHIDQELMEELKQIKEKVK------PAEVLYVADAMQGQEAI 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              E FH   G TG+I+TK+DG A+GG  + +     IP+ F+G GE I DL+ F     
Sbjct: 231 TTAEEFHKAVGLTGVILTKLDGDAKGGIALSVRQVLGIPIKFVGTGEKIEDLDLFYPDRI 290

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 291 AQRILGLGD 299


>gi|299137338|ref|ZP_07030520.1| signal recognition particle protein [Acidobacterium sp. MP5ACTX8]
 gi|298600743|gb|EFI56899.1| signal recognition particle protein [Acidobacterium sp. MP5ACTX8]
          Length = 460

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 149/277 (53%), Gaps = 19/277 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSE 90
           ++   ++D +RE +   L+ SD+ + VA+ ++E + TK     V+      ++++  V +
Sbjct: 22  LTDENINDALRE-IRLALLESDVNLNVAKDLIEHIRTKALGSQVATALSPAEQIVKIVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + ++L   +  F +  S  P VIL+ G+ G GKTT  GKL++ +   G + ML + D +
Sbjct: 81  ELVEVLGRDTARFKF-ASQPPTVILMAGLQGSGKTTTSGKLAQWLKKGGHRPMLVSVDVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAA------LAYEAFKQAQAKKVDVLIIDTAGR 204
           R AA +QLK+ A   +A     +   +AA       LA EA ++A     D+LI+DTAGR
Sbjct: 140 RPAAREQLKVVAQSINAQIYEGDTKGEAAGTPLVERLAREARREAANYGCDILIVDTAGR 199

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           L  +  LM    +M  + K+L+P     +L V DA TGQ+A+   + F+     TG I+T
Sbjct: 200 LGIDEALME---EMALLKKQLNPS---EILFVADAMTGQDAVNSAKAFNDKLTITGSILT 253

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           KMDG +RGG  + I      PV FLG GE  +  EPF
Sbjct: 254 KMDGDSRGGAALSIRQITGQPVKFLGTGEKSDAFEPF 290


>gi|226739|prf||1604366A signal recognition particle 54kD protein
          Length = 522

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 138/277 (49%), Gaps = 24/277 (8%)

Query: 45  VREELEDLLIR--------SDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDVSELI 92
           V EEL D L++        +D+ V + Q++   +  K       + ++ +R+   V + +
Sbjct: 23  VNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRI---VQKAV 79

Query: 93  HKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
              L  L  P    F+    RP VI++VG+ G GKTT   KL+      GLK  L A DT
Sbjct: 80  FDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQLK  A +    +  S   +D   +A E   + +  + DV+I+DT+GR     
Sbjct: 140 FRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQ 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L A   +M+ +    D   P   + +LDA+ GQ A  Q + F   A    +I+TK+DG 
Sbjct: 200 ELFA---EMVEI---SDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A+GGG +  V   K P+ F+G GE INDLE F  + F
Sbjct: 254 AKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSF 290


>gi|238854767|ref|ZP_04645097.1| signal recognition particle protein [Lactobacillus jensenii 269-3]
 gi|260663999|ref|ZP_05864852.1| signal recognition particle protein [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933845|ref|ZP_06339193.1| signal recognition particle protein [Lactobacillus jensenii 208-1]
 gi|313472284|ref|ZP_07812776.1| signal recognition particle protein [Lactobacillus jensenii 1153]
 gi|238832557|gb|EEQ24864.1| signal recognition particle protein [Lactobacillus jensenii 269-3]
 gi|239529871|gb|EEQ68872.1| signal recognition particle protein [Lactobacillus jensenii 1153]
 gi|260561885|gb|EEX27854.1| signal recognition particle protein [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301934|gb|EFA94188.1| signal recognition particle protein [Lactobacillus jensenii 208-1]
          Length = 475

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 163/316 (51%), Gaps = 23/316 (7%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E+LS   ++ K   + + K K    DI ++ R       E+   L+ +D+   V + 
Sbjct: 1   MAFENLS--ERIQKALKNLTGKGKVSEADINAASR-------EIRLALLEADVNFKVVKD 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++++  +   ++V       Q+++  V++ + KM+   +   N    H P +I++VG+ 
Sbjct: 52  FIKKIKERALGQEVQGSLTPGQQIIKIVNDELTKMMGEEAAKLNK-APHIPTIIMMVGLQ 110

Query: 121 GVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT +GKL+K + D    + +L AGD +R AAIDQLK   D+ S   V SE   D A
Sbjct: 111 GTGKTTTVGKLAKYLMDTEKARPLLIAGDIYRPAAIDQLKQIGDQLSVP-VFSEDEKDVA 169

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +  +   QA+  K D ++IDTAGRL  +  LM  + ++  V K      P +++ V+DA
Sbjct: 170 KIVADGLAQAKEAKNDYVLIDTAGRLEIDEALMEELERVKAVAK------PDNIVLVVDA 223

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ   +  E F      TG+I+TK+DG  RGG  + I      P+ F G GE +++LE
Sbjct: 224 MTGQVGAQVAETFDKRLDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSELE 283

Query: 300 PFVAKDFSAVITGCLD 315
            F     ++ I G  D
Sbjct: 284 GFYPDRMASRILGMGD 299


>gi|326791391|ref|YP_004309212.1| signal recognition particle protein [Clostridium lentocellum DSM
           5427]
 gi|326542155|gb|ADZ84014.1| signal recognition particle protein [Clostridium lentocellum DSM
           5427]
          Length = 446

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 143/270 (52%), Gaps = 16/270 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE-LIHKMLMPLSKPFNWD 106
           L+ +D+   V ++ ++ +  +    +V       Q+V+  V+E LI+ M    SK    +
Sbjct: 39  LLEADVNFKVVKQFIKTIEERAVGHEVMESLTPGQQVIKIVNEELINLMGSTQSK---IN 95

Query: 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           F+ R   VI++VG+ G GKTT   KLS  +   G + +L A D +R AAIDQL     + 
Sbjct: 96  FAPRGITVIMMVGLQGAGKTTTSAKLSSHIKSQGKRPLLVACDVYRPAAIDQLTKVGKQV 155

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +          +   +A      A+   +DV+IIDTAGRLH + +LM  + K I+ L + 
Sbjct: 156 NVPVFSMGSDKNPVDIAQAGVNYAKENNLDVVIIDTAGRLHIDEVLMDEL-KNIKALVK- 213

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  +L V+DA TGQ+A+   E F    G  G++MTK+DG +RGG  + +      P
Sbjct: 214 ----PQEILLVVDAMTGQDAVNVAESFDQTLGLDGVVMTKLDGDSRGGAALSVKAVTNKP 269

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G+GE +NDLEPF  +  ++ I G  D
Sbjct: 270 IKFVGMGEKLNDLEPFHPERIASRILGMGD 299


>gi|254580797|ref|XP_002496384.1| ZYRO0C17138p [Zygosaccharomyces rouxii]
 gi|238939275|emb|CAR27451.1| ZYRO0C17138p [Zygosaccharomyces rouxii]
          Length = 536

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 115/215 (53%), Gaps = 7/215 (3%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           +PF      + +VI+ VG+ G GKTT   KL+   S  G KV L   DTFR+ A DQLK 
Sbjct: 98  QPFQPK-KKKTNVIMFVGLQGSGKTTSCTKLAVYYSRRGFKVGLVCADTFRAGAFDQLKQ 156

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A +    F  S + +D   +A E   + + +K +V+I+DT+GR H    L   + ++  
Sbjct: 157 NAIKAHIPFYGSYVETDPVKVAAEGIAKFKKEKFEVIIVDTSGRHHQEEALFQEMVEIST 216

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V+       P+  + VLDA+ GQ A +Q + F   A    +++TKMDG A+GGG I  V 
Sbjct: 217 VVN------PNQTIMVLDASIGQAAEQQSKAFKETADFGAILLTKMDGHAKGGGAISAVA 270

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+ F+G GE I+DLE F  K F + + G  D
Sbjct: 271 ATNTPIIFIGTGEHIHDLERFSPKSFISKLLGIGD 305


>gi|124028501|ref|YP_001013821.1| Signal recognition particle GTPase [Hyperthermus butylicus DSM
           5456]
 gi|171769654|sp|A2BNB5|SRP54_HYPBU RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|123979195|gb|ABM81476.1| Signal recognition particle GTPase [Hyperthermus butylicus DSM
           5456]
          Length = 447

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 143/277 (51%), Gaps = 18/277 (6%)

Query: 48  ELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSVQ----RVLYD-VSELIHKMLMP 98
           +L+  LI +D+ V +     ++I E  L ++    +S +    ++ YD + +L      P
Sbjct: 31  DLQRALISADVNVRLVFNLTKRIRERALKEQPPPGLSRREWLVKLTYDELVKLFGGEYEP 90

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             KP      + P+VI++VGV G GKTT +GKL+K     G +V + A DT+R  A +QL
Sbjct: 91  EVKP-----PYTPYVIMMVGVQGSGKTTTVGKLAKFYRGMGYRVGVVAADTYRPGAYEQL 145

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K  ADR  A F       D   +A    ++ + +  D++I+DTAGR H      A + +M
Sbjct: 146 KQLADRAGAMFYGEPGSKDPVGIARRGVEELKQRGADIVIVDTAGR-HGYGEEEALLDEM 204

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            R+ + +    P  V+ V+DA  GQ +    + FH       +I+TKMDGTA+GGG +  
Sbjct: 205 KRIAEAIK---PDEVVLVIDAAMGQKSYDLAKRFHEATPVGSIIVTKMDGTAKGGGALSA 261

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           V      + F+G GE I+++E F  K F A + G  D
Sbjct: 262 VAATGARIKFIGTGEDIDEIEVFRPKRFVARLLGMGD 298


>gi|50122282|ref|YP_051449.1| signal recognition particle protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612808|emb|CAG76258.1| signal recognition particle protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 453

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 154/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL ++ ++E L ++   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLS 132
            DV+       +  +++   L+      N + +     P V+L+ G+ G GKTT +GKL 
Sbjct: 62  HDVNKSLTPGQEFVKIVKNELVSAMGEINAELNLAAQPPAVVLMAGLQGAGKTTSVGKLG 121

Query: 133 KKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +    KV++ + D +R AAI QL+  A +   DF  S+      A+   A + A+ 
Sbjct: 122 KFLREKQKKKVLVVSADVYRPAAIKQLETLAQQVGVDFFPSDAQEKPLAIVERALQHAKL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    + 
Sbjct: 182 KFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I 
Sbjct: 236 FNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|262373325|ref|ZP_06066604.1| signal recognition particle protein [Acinetobacter junii SH205]
 gi|262313350|gb|EEY94435.1| signal recognition particle protein [Acinetobacter junii SH205]
          Length = 469

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 158/295 (53%), Gaps = 25/295 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127
           ++V  Q        +++YD    + KM+   ++    D S +P V+ L+ G+ G GKTT 
Sbjct: 62  QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116

Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL++ + +    KVM  + D +R AAI QL+  ++     F+ S+       +   A 
Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSNEVGVGFIPSQASEKPIDIVNRAI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+ +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A 
Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PTETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
              + F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF
Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGIGEKLDALEPF 285


>gi|218768922|ref|YP_002343434.1| signal recognition particle protein [Neisseria meningitidis Z2491]
 gi|121052930|emb|CAM09284.1| signal recognition particle protein [Neisseria meningitidis Z2491]
 gi|319411220|emb|CBY91627.1| signal recognition particle protein (fifty-four homolog) [Neisseria
           meningitidis WUE 2594]
          Length = 456

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ +  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFINNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|242399400|ref|YP_002994824.1| Signal recognition 54 kDa protein [Thermococcus sibiricus MM 739]
 gi|242265793|gb|ACS90475.1| Signal recognition 54 kDa protein [Thermococcus sibiricus MM 739]
          Length = 453

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 142/279 (50%), Gaps = 16/279 (5%)

Query: 45  VREELEDL---LIRSDIGVAV----AQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKML 96
           VR+ + D+   LI SD+ V +     +KI +  L ++    VS  + ++  V E +   L
Sbjct: 33  VRDVVRDIQRALITSDVNVRLVLDLTKKIEKRALEEKPPAGVSKKEHIVKIVYEELTNFL 92

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              +KP   +   +P V+L VG+ G GKTT + KLS+     G KV +   DT+R  A  
Sbjct: 93  GKEAKPV--EIKAKPTVLLTVGIQGSGKTTSVAKLSRYFQKHGYKVGVVCSDTWRPGAYQ 150

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK   +    +   +    +A  LA E  +  + K VDV+I+D+AGR      L+  + 
Sbjct: 151 QLKQLIEPYGIEVFGNPEEKNAIKLAKEGVEYFKKKGVDVIIVDSAGRHKEEKGLIEEMR 210

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           ++   +       PH V+ ++D T GQ A  Q   F        +I+TK+DG+A+GGG +
Sbjct: 211 QISNTIN------PHEVILIIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGAL 264

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             VV    P+ F+GVGE I+DLEPF  K F + + G  D
Sbjct: 265 SAVVATGAPIKFIGVGEKIDDLEPFDPKRFVSRLLGLGD 303


>gi|325202877|gb|ADY98331.1| signal recognition particle protein [Neisseria meningitidis
           M01-240149]
 gi|325207324|gb|ADZ02776.1| signal recognition particle protein [Neisseria meningitidis
           NZ-05/33]
          Length = 456

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ +  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFINNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|299771374|ref|YP_003733400.1| signal recognition particle protein [Acinetobacter sp. DR1]
 gi|298701462|gb|ADI92027.1| signal recognition particle protein [Acinetobacter sp. DR1]
          Length = 471

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 158/295 (53%), Gaps = 25/295 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127
           ++V  Q        +++YD    + KM+   ++    D S +P V+ L+ G+ G GKTT 
Sbjct: 62  QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116

Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL++ + +    KVM  + D +R AAI QL+  +    A F+ S+       +   A 
Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSAEVGAGFIASDASEKPIDIVNRAI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+ +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A 
Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PTETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
              + F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF
Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPF 285


>gi|254671537|emb|CBA09153.1| signal recognition particle protein [Neisseria meningitidis
           alpha153]
          Length = 370

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ +  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFINNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|6900424|emb|CAB72034.1| signal recognition particle protein [Neisseria meningitidis]
          Length = 456

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 153/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ +  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFINNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|291288184|ref|YP_003505000.1| signal recognition particle protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885344|gb|ADD69044.1| signal recognition particle protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 450

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 113/208 (54%), Gaps = 6/208 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S+ P VI++ G+ G GKTT  GKL+         V+L AGD +R AAIDQL+    +   
Sbjct: 100 SNPPTVIMMAGLQGSGKTTSAGKLANFFMKQSKSVLLVAGDIYRPAAIDQLETLGRQLGC 159

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           D        DA  +A +A   A+    D+LIIDTAGRLH +  LM    +++R  + ++ 
Sbjct: 160 DVYSDRESKDAVKIAKDALAHAKKTAKDILIIDTAGRLHIDENLM---NEIVRTKEAVN- 215

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  VL V DA TGQ+A+   + F+ +   TG+I+TKMDG ARGG  + I      P+ 
Sbjct: 216 --PDEVLFVADAMTGQDAVNVAKSFNDMLDATGIILTKMDGDARGGAALSIKEVTGKPLK 273

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G GE + + E F     ++ I G  D
Sbjct: 274 FIGTGEKLTEFEQFYPDRMASRILGMGD 301


>gi|146312732|ref|YP_001177806.1| signal recognition particle protein [Enterobacter sp. 638]
 gi|145319608|gb|ABP61755.1| signal recognition particle subunit FFH/SRP54 (srp54) [Enterobacter
           sp. 638]
          Length = 453

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 155/309 (50%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRSLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVILVVGVNGVGKTTVIGK 130
            +V+  + L    E +  +   L      +       +  P V+L+ G+ G GKTT +GK
Sbjct: 62  HEVN--KSLTPGQEFVKIVRNELVAAMGEENQVLNLAAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A +   DF  S++      +   A K+A
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVEVDFFPSDVAQKPVDIVNAALKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A 
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HAAINPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     
Sbjct: 231 NTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRI 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|83644605|ref|YP_433040.1| signal recognition particle protein [Hahella chejuensis KCTC 2396]
 gi|83632648|gb|ABC28615.1| signal recognition particle protein [Hahella chejuensis KCTC 2396]
          Length = 460

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 159/309 (51%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L + +  I    +L +D +++ L ++   L+ +D+ + V ++ V+ +  K   
Sbjct: 2   FDSLTERLSDSLKKITGQAKLTEDNIKDTLREVRMALLEADVALPVVKEFVDSVKAKAVG 61

Query: 77  KDVSVQRVLYDVSELI---HKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGK 130
           ++V   R L    E I      L+ +    N D +     P VIL+ G+ G GKTT +GK
Sbjct: 62  QEV--MRSLTPGQEFIRVVQNELIAVMGRANEDLNLNCQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A     +F  S    D   +A  A  +A
Sbjct: 120 LARFLKERRKKSVMVVSADVYRPAAIKQLETLAGDVGVNFFPSTADQDPVDIASAAIAEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + +  DV+I+DTAGRLH ++ +M  I       KRL  HA   P   L V+DA TGQ+A 
Sbjct: 180 RLRFNDVVIVDTAGRLHIDADMMTEI-------KRL--HAAVSPIETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+I+TK DG ARGG  + +      P+ F+G+GE +  LEPF     
Sbjct: 231 NTAKAFNDALPLTGVILTKADGDARGGAALSVRSITGKPIKFMGMGEKVEALEPFHPDRV 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|88860520|ref|ZP_01135158.1| 4.5S-RNP protein, GTP-binding export factor [Pseudoalteromonas
           tunicata D2]
 gi|88817718|gb|EAR27535.1| 4.5S-RNP protein, GTP-binding export factor [Pseudoalteromonas
           tunicata D2]
          Length = 457

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 158/307 (51%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V+  + K  A
Sbjct: 2   FENLQERLGKTLKNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFVK--VVKERA 59

Query: 77  KDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L         V + + K +   ++  N + +  P VI++ G+ G GKTT + 
Sbjct: 60  VGVEVTKSLSPGQVFVKIVRQELEKAMGEANEELNLN-AQPPAVIMMAGLQGAGKTTSVA 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K +++   K V++ + D +R AAI QL+  A     +F  S+I      +A  A   
Sbjct: 119 KLAKFLTERKKKSVLVVSADVYRPAAIKQLETLATEVKVEFFPSDISQKPIDIANNAISH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K +DV+I+DTAGRLH +S +M  I  +   +K      P   L V+DA TGQ+A   
Sbjct: 179 AKRKFIDVVIVDTAGRLHVDSNMMDEIKALHSAVK------PIETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK DG ARGG  + I      P+ F+GVGE  + LEPF     ++
Sbjct: 233 AKAFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|255023711|ref|ZP_05295697.1| SRP receptor alpha-subunit [Listeria monocytogenes FSL J1-208]
          Length = 145

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 67/132 (50%), Positives = 91/132 (68%)

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD AA+ ++A + A+A+K DVL+ DTAGRL N   LM  + K+ RV+ R  P+APH VL
Sbjct: 1   GSDPAAVMFDAVQAAKARKADVLLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVL 60

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE 
Sbjct: 61  LVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQ 120

Query: 295 INDLEPFVAKDF 306
           ++DL+ F A ++
Sbjct: 121 MDDLQAFDANEY 132


>gi|325205379|gb|ADZ00832.1| signal recognition particle protein [Neisseria meningitidis
           M04-240196]
          Length = 456

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V       Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVVGSLTPDQAFIGVVNKALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|315144939|gb|EFT88955.1| signal recognition particle protein [Enterococcus faecalis TX2141]
 gi|315162383|gb|EFU06400.1| signal recognition particle protein [Enterococcus faecalis TX0645]
          Length = 472

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 161/308 (52%), Gaps = 21/308 (6%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +  V+E + ++   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E + K L   +   N   S  P VI++ G+ G GKTT  GK
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKS-SKIPTVIMMTGLQGAGKTTFTGK 120

Query: 131 LSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFK 187
           L+K  M     + +L AGD +R AAIDQLK+   +   +    ++G+DA    +  +   
Sbjct: 121 LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGLA 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ KK D ++IDTAGRLH +  LM  + K I+ L       P+ +L V+DA TGQ+A+ 
Sbjct: 179 LAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKELAN-----PNEILLVVDAMTGQDAVN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     S
Sbjct: 233 VADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|150399615|ref|YP_001323382.1| signal recognition particle protein Srp54 [Methanococcus vannielii
           SB]
 gi|166222337|sp|A6UQJ8|SRP54_METVS RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|150012318|gb|ABR54770.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanococcus vannielii SB]
          Length = 450

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 152/288 (52%), Gaps = 24/288 (8%)

Query: 39  RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           ++L   V ++++  LI+SD+ V         + +K +EE   K ++K   + +++YD  E
Sbjct: 24  KKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGFSKKEHIIKIVYD--E 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L+ K+L    +    D S +  VIL+VG+ G GKTT   KL++ +   G+K  L A D +
Sbjct: 82  LV-KLLGENPQKLELDPSKK-SVILLVGIQGSGKTTSSAKLARYIQKKGMKPALIAADIY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNN 208
           R AA  QLK  +++ +      E  +       E  K+   + KK DVLIIDTAGR    
Sbjct: 140 RPAAYQQLKQLSEKINVPLFGDETKTKTPV---EIVKEGIEKLKKSDVLIIDTAGRHKEE 196

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMD 267
             L+  + +M  +        P+ ++ V+D T GQ A  Q + F  AV+    +++TK+D
Sbjct: 197 ESLLEEMKQMKEITN------PNEIILVIDGTLGQQAKNQAKAFKDAVSEIGSILVTKLD 250

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G+A+GGG +  V     P+ F+G GEG+++LE F  K F + + G  D
Sbjct: 251 GSAKGGGALSAVAEINAPIKFIGTGEGVDNLETFDPKKFISRLLGMGD 298


>gi|308274695|emb|CBX31294.1| Signal recognition particle protein [uncultured Desulfobacterium
           sp.]
          Length = 449

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 147/284 (51%), Gaps = 11/284 (3%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHK 94
           ++ + +++G++E +   L+ +D+   V +K+V ++  +   ++V       + V ++++ 
Sbjct: 28  LTEKNIEEGLKE-VRMALLEADVHYKVVKKLVADIKERSLGQEVMASLTPGHQVIKIVND 86

Query: 95  MLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            L  L    + +       P  I++VG+ G GKTT  GK++  +   G K  L   D +R
Sbjct: 87  ELTRLMGSSHQEIVLSGSVPVSIMLVGLQGSGKTTTAGKIAIFLRQKGRKPFLVPADVYR 146

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            AAIDQL+  A++       S +  D   +  +A   AQ    D LI+DTAGRLH N  L
Sbjct: 147 PAAIDQLRKIAEQIGVPAFESSVDMDPVDICLKAKTTAQKLGCDTLILDTAGRLHINEEL 206

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           MA + ++   +K      P  +L V DA TGQ+A+   + F +     G+I+TKMDG AR
Sbjct: 207 MAELSRIKNAVK------PSDILLVADAMTGQDAVNISKSFDSSLDIGGVILTKMDGDAR 260

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG  + I      P+ F+GVGE ++ LEPF     S+ I G  D
Sbjct: 261 GGAALSIKAITNKPIKFIGVGEKLSALEPFYPDRMSSRILGMGD 304


>gi|12230630|sp|O59307|SRP54_PYRHO RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
          Length = 443

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 141/282 (50%), Gaps = 22/282 (7%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIHKML 96
           V+E + D+   L+++D+ V +  K+ +E+    L ++    +S  + ++  V E + K L
Sbjct: 28  VKEVVRDIQRALLQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 87

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              +KP   +   +P V+L VGV G GKTT + KL++     G KV +   DT+R  A  
Sbjct: 88  GTEAKPI--EIKEKPTVLLTVGVQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYH 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MA 213
           QLK   D    +        DA  LA E  +  + + VD++I+DTAGR      L   M 
Sbjct: 146 QLKQLLDPYHIEVFGDPNEKDAVKLAKEGVEYFKTRDVDLIIVDTAGRHKEEKDLIEEMR 205

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            I + IR         PH V+ V+D T GQ A  Q   F        +I+TK+D +A+GG
Sbjct: 206 MISEEIR---------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGG 256

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +  V     P+ F+GVGE I+DLEPF    F + + G  D
Sbjct: 257 GALSAVAATGAPIKFIGVGEKIDDLEPFDPARFVSRLLGLGD 298


>gi|324005826|gb|EGB75045.1| signal recognition particle protein [Escherichia coli MS 57-2]
          Length = 453

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 158/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+D+ TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDSMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|169824222|ref|YP_001691833.1| signal recognition particle [Finegoldia magna ATCC 29328]
 gi|302380887|ref|ZP_07269349.1| signal recognition particle protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303234951|ref|ZP_07321576.1| signal recognition particle protein [Finegoldia magna BVS033A4]
 gi|167831027|dbj|BAG07943.1| signal recognition particle [Finegoldia magna ATCC 29328]
 gi|302311265|gb|EFK93284.1| signal recognition particle protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302494069|gb|EFL53850.1| signal recognition particle protein [Finegoldia magna BVS033A4]
          Length = 446

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 161/307 (52%), Gaps = 23/307 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+  ++ + +  +L     D    E++  L+ +D+   V +  + ++  K  A
Sbjct: 3   FENLSDKLQNALSKLTNRGKLTEKDIDVAMREVKLALLEADVNYKVVKDFISQV--KERA 60

Query: 77  KDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            D SV       Q+V+  V+E + KM+    +  N     +P VI++ G+ G GKTT  G
Sbjct: 61  IDSSVLESLTPGQQVIKIVNEELTKMMGEKEEKLNVS-PMKPTVIMLCGLQGAGKTTHAG 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQ 188
           KL+  + +    V+L A D +R AAI QL++   +   +    E+G  +   ++ +A ++
Sbjct: 120 KLALNLKNKNKSVLLVACDIYRPAAIKQLQVVGGKVGVEVF--EMGQINPVEISKKAIEE 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K +D +IIDTAGRLH +  LM  +  + + +       P  +L V+DA TGQ+A+  
Sbjct: 178 AKRKNIDYVIIDTAGRLHIDDTLMDELKNIKQEVN------PSDILLVVDAMTGQDAVNV 231

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F+     TG+I+TK+DG ARGG  + I      P+ F+GVGE + DLEPF     ++
Sbjct: 232 AAKFNEDLDITGIILTKLDGDARGGAALSIRQVADKPIKFIGVGEKLGDLEPFHPDRMAS 291

Query: 309 VITGCLD 315
            I G  D
Sbjct: 292 RILGMGD 298


>gi|262280102|ref|ZP_06057887.1| signal recognition particle GTPase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260453|gb|EEY79186.1| signal recognition particle GTPase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 471

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 159/295 (53%), Gaps = 25/295 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127
           ++V  Q        +++YD    + KM+   ++    D S +P V+ L+ G+ G GKTT 
Sbjct: 62  QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116

Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL++ + +    KVM  + D +R AAI QL+  +    A F+ S+       +   A 
Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSAEVGAGFIPSDASEKPIDIVNRAI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+ +  DVLI+DTAGRLH ++ +M  I ++   +K      P   L V+DA TGQ+A 
Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDADMMDEIKELHAAVK------PTETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
              + F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF
Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPF 285


>gi|14591457|ref|NP_143537.1| signal recognition particle protein Srp54 [Pyrococcus horikoshii
           OT3]
 gi|3258124|dbj|BAA30807.1| 445aa long hypothetical signal recognition particle protein
           [Pyrococcus horikoshii OT3]
          Length = 445

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 141/282 (50%), Gaps = 22/282 (7%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIHKML 96
           V+E + D+   L+++D+ V +  K+ +E+    L ++    +S  + ++  V E + K L
Sbjct: 30  VKEVVRDIQRALLQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 89

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              +KP   +   +P V+L VGV G GKTT + KL++     G KV +   DT+R  A  
Sbjct: 90  GTEAKPI--EIKEKPTVLLTVGVQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYH 147

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MA 213
           QLK   D    +        DA  LA E  +  + + VD++I+DTAGR      L   M 
Sbjct: 148 QLKQLLDPYHIEVFGDPNEKDAVKLAKEGVEYFKTRDVDLIIVDTAGRHKEEKDLIEEMR 207

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            I + IR         PH V+ V+D T GQ A  Q   F        +I+TK+D +A+GG
Sbjct: 208 MISEEIR---------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGG 258

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +  V     P+ F+GVGE I+DLEPF    F + + G  D
Sbjct: 259 GALSAVAATGAPIKFIGVGEKIDDLEPFDPARFVSRLLGLGD 300


>gi|78779766|ref|YP_397878.1| signal recognition particle protein [Prochlorococcus marinus str.
           MIT 9312]
 gi|78713265|gb|ABB50442.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Prochlorococcus marinus str. MIT 9312]
          Length = 489

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 150/286 (52%), Gaps = 14/286 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           IS   ++D ++E ++  L+ +D+ ++V ++ + ++  K   ++V       Q+ +  V++
Sbjct: 22  ISENNINDALKE-VKRALLDADVSLSVVKEFISDVKDKAIGEEVVRGVNPGQKFIEVVNK 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  ++   + P N + S  P VIL+ G+ G GKTT  GKL   + +   KV+L A D +
Sbjct: 81  ELINIMGNENSPLNENQSS-PTVILMAGLQGAGKTTATGKLGLYLKEKDKKVLLVAADIY 139

Query: 151 RSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           R AA++QLK    +   + F   E  S    +  +A   A     + +IIDTAGRL  + 
Sbjct: 140 RPAAVEQLKTLGSQYDLEVFSAKEKNSKPEEITKDALNYANENNFNSIIIDTAGRLQIDD 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +M+   +M+R+    +   P  VL V+D+  GQ A    + FH   G +G I+TK+DG 
Sbjct: 200 SMMS---EMVRIK---EVSNPDEVLLVVDSMIGQEAADLTKSFHEKVGISGAILTKLDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + I      P+ F+GVGE I  L+PF  +  ++ I G  D
Sbjct: 254 SRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRILGMGD 299


>gi|43142|emb|CAA25957.1| unnamed protein product [Escherichia coli]
          Length = 368

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/212 (37%), Positives = 117/212 (55%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A++  
Sbjct: 12  AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 71

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++G     +   A K+A+ K  DVL++DTAGRLH +  +M  I ++        
Sbjct: 72  VDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 123

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 124 -HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 182

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE    LEPF     ++ I G  D
Sbjct: 183 KPIKFLGVGEKTEALEPFHPDRIASRILGMGD 214


>gi|188534781|ref|YP_001908578.1| signal recognition particle protein [Erwinia tasmaniensis Et1/99]
 gi|188029823|emb|CAO97704.1| Signal recognition particle protein (Fifty-four homolog) [Erwinia
           tasmaniensis Et1/99]
          Length = 453

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 116/212 (54%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A++  
Sbjct: 97  AQPPAVILMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A +QA+ K  DVL++DTAGRLH +  +M  I ++        
Sbjct: 157 VDFCPSDLSQQPVDIVKNALQQARLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+GVGE    LEPF     ++ I G  D
Sbjct: 268 KPIKFMGVGEKTEALEPFYPDRIASRILGMGD 299


>gi|78186827|ref|YP_374870.1| Signal recognition particle protein [Chlorobium luteolum DSM 273]
 gi|78166729|gb|ABB23827.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium
           luteolum DSM 273]
          Length = 449

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 139/268 (51%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +K+VE++  K   +DV       Q ++  VS+ + +++    KP N   
Sbjct: 38  LLGADVNYKVVKKLVEDIRLKSLGEDVVKSVSPAQMIVKIVSDELTELMGGEQKPLNLST 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            + P V++V G+ G GKTT   KL+K++   G   M+ A D +R AA++QLK        
Sbjct: 98  KNLPAVVMVAGLQGSGKTTFCAKLAKRLKKGGKNPMMVAADVYRPAAVEQLKTLGLEVGV 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V S    DA  +A E  + A+    DVLI+DTAGRL  +  +MA    +  ++K    
Sbjct: 158 P-VFSLDEQDAMKVAREGLEAARRGAHDVLILDTAGRLQIDDRMMAEAEALKNLMK---- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+  GQ A+   + F+      G+++TK+DG +RGG  + I    + P+ 
Sbjct: 213 --PEELLFVVDSMMGQEAVNTAKAFNDRLDFDGVVLTKLDGDSRGGAALSIRQVVEKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+ VGE ++DL+ F     +  I G  D
Sbjct: 271 FMSVGEKMDDLDQFYPDRMAQRILGMGD 298


>gi|148242807|ref|YP_001227964.1| Signal recognition particle protein [Synechococcus sp. RCC307]
 gi|147851117|emb|CAK28611.1| Signal recognition particle protein [Synechococcus sp. RCC307]
          Length = 493

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 140/270 (51%), Gaps = 16/270 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLSKPFNWDFS-- 108
           L+ +D+ + V +  + E+  K    DV V+ V  D    +L+H+ L+ +    N   +  
Sbjct: 42  LLDADVSLPVVKSFIAEVREKALGADV-VRGVSPDQQFIKLVHEELVEVMGGANAPLAKA 100

Query: 109 -HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
              P V+L+ G+ G GKTT   KL   + + G + +L A DT+R AAIDQL+    +   
Sbjct: 101 EQSPTVVLMAGLQGAGKTTATAKLGLHLKEQGRRALLVAADTYRPAAIDQLQTLGQQI-- 158

Query: 168 DFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           D     +G+DA   A+A     + + +  D +I+DTAGRL  ++ +M    +M+R+   +
Sbjct: 159 DVEVFSLGADAKPEAIAEAGLAKGREEGFDTVIVDTAGRLQIDTSMME---EMVRIRSAV 215

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP  VL V+D+  GQ A      FH   G TG ++TKMDG +RGG  + I      P
Sbjct: 216 ---APDEVLLVVDSMIGQEAADLTRSFHEQVGITGAVLTKMDGDSRGGAALSIRKVSGAP 272

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G GE +  L+PF  +  ++ I G  D
Sbjct: 273 IKFIGTGEKVEALQPFHPERMASRILGMGD 302


>gi|15676217|ref|NP_273349.1| signal recognition particle protein [Neisseria meningitidis MC58]
 gi|304389131|ref|ZP_07371173.1| signal recognition particle protein [Neisseria meningitidis ATCC
           13091]
 gi|7225519|gb|AAF40746.1| signal recognition particle protein [Neisseria meningitidis MC58]
 gi|304336930|gb|EFM03122.1| signal recognition particle protein [Neisseria meningitidis ATCC
           13091]
 gi|316985236|gb|EFV64188.1| signal recognition particle protein [Neisseria meningitidis H44/76]
 gi|325135098|gb|EGC57726.1| signal recognition particle protein [Neisseria meningitidis M13399]
 gi|325141130|gb|EGC63633.1| signal recognition particle protein [Neisseria meningitidis CU385]
 gi|325199497|gb|ADY94952.1| signal recognition particle protein [Neisseria meningitidis H44/76]
          Length = 456

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ +  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFINNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     +  I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLAGRILGMGD 299


>gi|327441079|dbj|BAK17444.1| signal recognition particle GTPase [Solibacillus silvestris
           StLB046]
          Length = 452

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/213 (38%), Positives = 125/213 (58%), Gaps = 12/213 (5%)

Query: 107 FSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADR 164
           FS+RP  VI++VG+ G GKTT  GKL+  +      K +L A D +R AA++QL+    +
Sbjct: 96  FSNRPPTVIMMVGLQGAGKTTTTGKLANVLRKKYNKKPLLVAADIYRPAAVEQLQTLGKQ 155

Query: 165 TSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            S       +G+D +   +A +A + A+ + +DV++IDTAGRLH +  LM  + K IR L
Sbjct: 156 LSLPVFS--LGTDVSPVEIARQAIEHAKEEHLDVVLIDTAGRLHIDEELMQEL-KDIRGL 212

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           K      P  V  V+DA TGQ+A+   + F+   G TG+++TK+DG  RGG  + I    
Sbjct: 213 KE-----PDEVFLVVDAMTGQDAVNVAQSFNETVGITGVVLTKLDGDTRGGAALSIRSVT 267

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + P+ F+G+GE ++ LEPF  +  ++ I G  D
Sbjct: 268 EKPIKFVGMGEKMDALEPFHPERMASRILGMGD 300


>gi|292487301|ref|YP_003530173.1| signal recognition 54 kDa protein (SRP54) [Erwinia amylovora
           CFBP1430]
 gi|291552720|emb|CBA19765.1| Signal recognition 54 kDa protein (SRP54) [Erwinia amylovora
           CFBP1430]
 gi|312171409|emb|CBX79668.1| Signal recognition 54 kDa protein (SRP54) [Erwinia amylovora ATCC
           BAA-2158]
          Length = 481

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 167/324 (51%), Gaps = 26/324 (8%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVA 61
           VA+ +  ++ + T  F + + +L + + +I    RL +D +++ L ++   L+ +D+ + 
Sbjct: 16  VATAASHYVERETM-FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALP 74

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELI----HKMLMPLSKPFNWD--FSHRPHVIL 115
           V +  +  +  K  A    V + L    E +    ++++  + +  N     +  P VIL
Sbjct: 75  VVRDFIGRV--KERAVGQEVNKSLTPGQEFVKIVKNELVAAMGEENNTLNLAAQPPAVIL 132

Query: 116 VVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A++   DF  S++
Sbjct: 133 MAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFCPSDL 192

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PH 231
                 +   A +QA+ K  DVL++DTAGRLH +  +M  I ++         HA   P 
Sbjct: 193 TQQPVDIVKNALQQAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HAAINPV 243

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I      P+ F+GV
Sbjct: 244 ETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFMGV 303

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE    LEPF     ++ I G  D
Sbjct: 304 GEKTEALEPFYPDRIASRILGMGD 327


>gi|218701122|ref|YP_002408751.1| signal recognition particle protein [Escherichia coli IAI39]
 gi|218371108|emb|CAR18936.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli IAI39]
          Length = 453

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL   A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLVTLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|149280108|ref|ZP_01886232.1| signal recognition particle protein [Pedobacter sp. BAL39]
 gi|149229122|gb|EDM34517.1| signal recognition particle protein [Pedobacter sp. BAL39]
          Length = 446

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 113/210 (53%), Gaps = 6/210 (2%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           D  + P +IL+ G+NG GKTT  GKL+  +   G K +L AGD +R AA+DQL+I  ++ 
Sbjct: 94  DLKNNPTIILIAGLNGAGKTTFTGKLANYLKSKGKKPLLVAGDVYRPAAVDQLQILGEQI 153

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                 +    D   +A E   + + +  +V+IIDTAGRL  +  +M  I  +    K  
Sbjct: 154 GVPVYANIESKDPVGIALEGIAEGKKQHNNVIIIDTAGRLAIDEQMMDEIAAVKENTK-- 211

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               PH +L V+DA TGQ+A+   + F+     TG+++TK+DG  RGG  + I      P
Sbjct: 212 ----PHEILFVVDAMTGQDAVNTAKAFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVNKP 267

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G GE +  L+ F  +  ++ I G  D
Sbjct: 268 IKFIGTGEKMEALDVFYPERMASRILGMGD 297


>gi|258571053|ref|XP_002544330.1| signal recognition particle 54 kDa protein [Uncinocarpus reesii
           1704]
 gi|237904600|gb|EEP79001.1| signal recognition particle 54 kDa protein [Uncinocarpus reesii
           1704]
          Length = 539

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 151/301 (50%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   ++D+  S  LD    D + +E+   L+ +D+ V + Q++ + +        +   
Sbjct: 9   RINAAVSDLTRSSNLDEKAFDSMLKEICAALLSADVNVRLVQELRKSIKSSVNFSSIPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P ++PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--QLV-TLVDPKTEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + +K 
Sbjct: 125 YQTRGFKSALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAAEGVAKFKKEKF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +++I+DT+GR    + L     +MI++   +    P   + VLD+T GQ A  Q   F +
Sbjct: 185 ELIIVDTSGRHKQEADLFT---EMIQIQNAVK---PDQTIMVLDSTIGQAAEAQSAAFKS 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V   K P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATKTPIIFLGTGEHMLDLERFAPKPFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|147678059|ref|YP_001212274.1| signal recognition particle GTPase [Pelotomaculum thermopropionicum
           SI]
 gi|146274156|dbj|BAF59905.1| signal recognition particle GTPase [Pelotomaculum thermopropionicum
           SI]
          Length = 450

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 148/303 (48%), Gaps = 14/303 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           FA  S +L+E    +    RL +  V E L ++   L+ +D+   V +  +  +  K   
Sbjct: 3   FAGLSERLQETFRKLRGKGRLTEADVNEALREVRMALLEADVNFKVVKDFIARIKEKAVG 62

Query: 77  KD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLS 132
           ++ +        V +++H  L+ L    N   +  P    VI++VG+NG GKTT   KL+
Sbjct: 63  QELIESLNPAQHVVKVVHGELVALMGGSNSKINMAPKPPTVIMMVGLNGAGKTTTSAKLA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             +   G + +L A D +R AA+ QL++  ++          G +  ++   A + A   
Sbjct: 123 NYLRKQGRRPLLVAADVYRPAAVKQLQVLGEQLGIPVFADGTGKEPVSIGLAAAESAVTG 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV+IIDTAGR   N  LMA +  M   ++      PH VL V+DA TGQ A+   E F
Sbjct: 183 GRDVVIIDTAGRQEVNEELMAELEAMKEAIR------PHEVLLVVDAMTGQAAVGVAETF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           ++  G  G+I+TK+DG  RGG  + +      P+ F G+GE ++ LEPF     +  I G
Sbjct: 237 NSRLGLDGVILTKLDGDTRGGAALSVRAVTGKPIKFAGLGEKLDALEPFHPDRMAERILG 296

Query: 313 CLD 315
             D
Sbjct: 297 MGD 299


>gi|332535262|ref|ZP_08411064.1| signal recognition particle, subunit Ffh SRP54 [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035293|gb|EGI71797.1| signal recognition particle, subunit Ffh SRP54 [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 459

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 158/307 (51%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L + + +I    RL +D +++ L ++    + +D+ + V ++ V+++  K  A
Sbjct: 2   FENLQERLGKTLKNISGRGRLTEDNIKDTLREVRMAFLEADVALPVVREFVKQV--KERA 59

Query: 77  KDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L         V E + K +   ++  + + +  P V++V G+ G GKTT + 
Sbjct: 60  VGVEVTKSLSPGQVFIKIVREELEKAMGEANEELSLN-AQPPAVVMVAGLQGAGKTTSVA 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + +   K V++ + D +R AAI QL+  A     DF  S+I      +A  A   
Sbjct: 119 KLAKFLKERKKKSVLVVSADVYRPAAIKQLETLATEVDVDFFPSDISQKPVDIANAAISH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K +DV+++DTAGRLH +S +M  I  + + +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFIDVVLVDTAGRLHVDSNMMDEIKDLHKAIN------PIETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK DG ARGG  + I      P+ F+GVGE  + LEPF     ++
Sbjct: 233 AKAFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|146328752|ref|YP_001209342.1| signal recognition particle protein [Dichelobacter nodosus
           VCS1703A]
 gi|146232222|gb|ABQ13200.1| signal recognition particle protein [Dichelobacter nodosus
           VCS1703A]
          Length = 452

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 147/285 (51%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSE 90
           IS   +++ +RE +   LI +D+ + V +++ E +      ++V       Q  L  V  
Sbjct: 22  ISEENIENALRE-VRMALIEADVALPVVKEVTETIKEAAIGQEVGQKLSPDQAFLKIVQA 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + +++   +   N   +  P VIL+ G+ G GKTT   KL++++ +   KV L + D +
Sbjct: 81  ELTRIMGEQNDALNL-ATQPPAVILLAGLQGSGKTTSAAKLARRLMNEKKKVALVSVDIY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI QL+  A++ +A F+ S        +A  A   AQ +  DVLI+DTAGR+H +  
Sbjct: 140 RPAAIKQLQTLAEQINATFILSHEQEAPQDIANRALDFAQKQFFDVLIVDTAGRMHVDEQ 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  I  + + L+      P   L V+DA TGQ+A    + FH     TG+I++K+DG A
Sbjct: 200 LMNEIKLLHQCLQ------PIETLFVVDAMTGQDAANTAKAFHDALPLTGIILSKVDGDA 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ FLG+GE  + LE F     ++ I G  D
Sbjct: 254 RGGAALSIRHITGKPIKFLGIGEKTDALEAFHPDRIASRILGMGD 298


>gi|318042117|ref|ZP_07974073.1| signal recognition particle protein [Synechococcus sp. CB0101]
          Length = 487

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 145/282 (51%), Gaps = 18/282 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100
           DG  +E+   L+ +D+ + V +  V+E+  K    +V V+ +  D    +++H+ L+   
Sbjct: 28  DGALKEVRRALLEADVSLPVVKDFVDEVRKKALGAEV-VRGISPDQKFIQVVHEQLVDTM 86

Query: 101 KPFNWDFSH-----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              N   +       P V+L+ G+ G GKTT   KL   + + G K +L   D +R AAI
Sbjct: 87  GGENAPLAAGGKPGEPSVVLMAGLQGAGKTTATAKLGLHLKEQGRKALLVGADVYRPAAI 146

Query: 156 DQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           DQLK    +   +     +G+DA   A+A    ++A+A+  D +++DTAGRL  +  +M 
Sbjct: 147 DQLKTLGGQIGVEVFS--LGTDAKPEAIAAAGIEKAKAEGFDTVLVDTAGRLQIDESMME 204

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              +M+R+    +  +P  VL V+D+  GQ A      FH   G TG ++TK+DG +RGG
Sbjct: 205 ---EMVRI---REACSPDEVLLVVDSMIGQEAAELTRAFHDQVGITGAVLTKLDGDSRGG 258

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 259 AALSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRILGMGD 300


>gi|296120454|ref|YP_003628232.1| signal recognition particle protein [Planctomyces limnophilus DSM
           3776]
 gi|296012794|gb|ADG66033.1| signal recognition particle protein [Planctomyces limnophilus DSM
           3776]
          Length = 491

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S +  L+  +T I  S +L +  +RE L+ +   L+ +D+   VA + +E++  +   
Sbjct: 2   FESITQGLQGALTGIFRSGKLTEANIREGLKQVRQALLEADVEYNVATQFIEKVTAEAVG 61

Query: 77  KDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLS 132
           + V    R    +  ++H+ L+ L  P +     R    + I++ G+ G GKTT  GKL+
Sbjct: 62  EKVLKSLRPDEQLIGIVHQQLIALMGPTDHSLHLRRDGINKIMMCGLQGAGKTTTCGKLA 121

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +K+   G K ++ A D  R AAI+QLK    +          G +  A+       A+  
Sbjct: 122 RKLKAEGWKPLMVAADMQRPAAIEQLKTLGQQLDVPVYAEAPGGNPVAVCKNGLAHAKTA 181

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNALRQVEM 251
             +V+I DTAGRLH +  LM         L+++D    P  V  V DA TGQ+A+R  + 
Sbjct: 182 GANVVIFDTAGRLHVDDRLMF-------ELEQIDSRVQPDQVYLVCDAMTGQDAVRSAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+I+TK+DG  RGG  I +     +P+ F+G+GE ++ LEPF     +  I 
Sbjct: 235 FNDALELDGVILTKLDGDTRGGAAISVKQVTGVPIKFVGMGEQLDRLEPFHPDRMAGRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|226953505|ref|ZP_03823969.1| GTP-binding signal recognition particle protein [Acinetobacter sp.
           ATCC 27244]
 gi|294649506|ref|ZP_06726927.1| signal recognition particle protein [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835746|gb|EEH68129.1| GTP-binding signal recognition particle protein [Acinetobacter sp.
           ATCC 27244]
 gi|292824567|gb|EFF83349.1| signal recognition particle protein [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 469

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 158/295 (53%), Gaps = 25/295 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127
           ++V  Q        +++YD    + KM+   ++    D S +P V+ L+ G+ G GKTT 
Sbjct: 62  QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116

Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL++ + +    KVM  + D +R AAI QL+  ++     F+ S+       +   A 
Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSNEVGVGFIPSQASERPIDIVNRAI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+ +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A 
Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDDDMMDEIKELHAAVK------PTETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
              + F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF
Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGIGEKLDALEPF 285


>gi|5912336|emb|CAB56066.1| cell division protein [Rickettsia felis]
          Length = 136

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 94/136 (69%), Gaps = 2/136 (1%)

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++AY A +++  + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HSVL V+
Sbjct: 2   ASVAYRAMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VI 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   QVE F+     TGLI+TK+DG+A+ G L+ +V    +PVYF+G+GE I D
Sbjct: 61  DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVLVGVVQKFNLPVYFIGIGEKIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DF+  + G 
Sbjct: 121 LKIFNRHDFAKSLVGL 136


>gi|300819917|ref|ZP_07100100.1| signal recognition particle protein [Escherichia coli MS 107-1]
 gi|300527505|gb|EFK48567.1| signal recognition particle protein [Escherichia coli MS 107-1]
          Length = 453

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL+ DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLADTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|87301099|ref|ZP_01083940.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH
           5701]
 gi|87284067|gb|EAQ76020.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH
           5701]
          Length = 492

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 146/280 (52%), Gaps = 16/280 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100
           +G  +++   L+ +D+ + V +  +EE+ T+    +V V+ V  D    +L+H+ L+ + 
Sbjct: 28  EGALKQVRRALLEADVSLEVVKGFIEEVRTQAVGAEV-VRGVSPDQQFIQLVHQALVEVM 86

Query: 101 KPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              N   +     P VIL+ G+ G GKTT   KL   + + G + ++ A D +R AAIDQ
Sbjct: 87  GGENAPLAVADQAPTVILMAGLQGAGKTTATAKLGLHLKEQGKRALMVAADVYRPAAIDQ 146

Query: 158 LKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           L+    +   +     +G+DA    +A     +A+ +  D +++DTAGRL  ++ +M   
Sbjct: 147 LQTLGQQIGVEVFS--LGADARPEDIAAAGIARAKEEGFDTVLVDTAGRLQIDTAMME-- 202

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +M+R+ +     AP  VL V+D+  GQ A      FH   G TG ++TK+DG +RGG  
Sbjct: 203 -EMVRIRQ---AAAPDEVLLVVDSMIGQEAAELTRAFHEQVGLTGAVLTKLDGDSRGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 259 LSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRILGMGD 298


>gi|89075050|ref|ZP_01161491.1| putative signal recognition particle protein [Photobacterium sp.
           SKA34]
 gi|89049137|gb|EAR54702.1| putative signal recognition particle protein [Photobacterium sp.
           SKA34]
          Length = 455

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 153/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL DD +++ L ++   L+ +D+ + V ++ V+ +  K  A
Sbjct: 2   FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130
               V + L    E I  +   L      +    D S   P VIL+ G+ G GKTT +GK
Sbjct: 60  VGTEVSKSLTPGQEFIKIVQAELEAVMGEESEGLDLSCQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A     DF  S +      +A  A +  
Sbjct: 120 LGKLLKERDSKKVLVVSADVYRPAAIKQLETLAGDVGIDFFPSNVEQKPVEIAKAALEHG 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DV+I+DTAGRLH +  +M  I  + + L       P   L V+DA TGQ+A    
Sbjct: 180 RLKFYDVVIVDTAGRLHVDEEMMGEIKDVHKTLN------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG ARGG  + +      P+ FLG+GE  + LEPF     ++ 
Sbjct: 234 KAFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGIGEKTDALEPFHPNRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|317055139|ref|YP_004103606.1| signal recognition particle protein [Ruminococcus albus 7]
 gi|315447408|gb|ADU20972.1| signal recognition particle protein [Ruminococcus albus 7]
          Length = 458

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 146/275 (53%), Gaps = 15/275 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101
           +E++  L+ +D+   V +  V  +  +   +DV       Q+V+  V+E + K++   + 
Sbjct: 33  KEVKMALLEADVSYKVVKDFVANVTERSVGEDVLKSLTPAQQVIKIVNEELVKLMGEANS 92

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
             N+  S  P VI++ G+ G GKTT   KL+K     G + +L A D +R AAIDQLKI 
Sbjct: 93  KINFP-SKPPCVIMMCGLQGSGKTTHAAKLAKMFKRQGSRPLLIAADVYRPAAIDQLKIV 151

Query: 162 ADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           A++  A     E+G  D   +  E  KQA+    D++IIDTAGRLH +  LM  +  + +
Sbjct: 152 AEK--AQVPVFEMGQIDPRKIVKEGLKQAKDYGNDMVIIDTAGRLHIDEELMDELKDIKK 209

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           + +      P  ++ V+DA  GQ+A++    F    G   +I+TK+D   RGG  + ++ 
Sbjct: 210 IAE------PSEIMLVVDAMIGQDAVKVASSFDEALGIDSVILTKLDSDTRGGAALSVLA 263

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+ F+G+GE +++ EPF  +  ++ I G  D
Sbjct: 264 VTGKPIKFVGMGEKLDEFEPFHPERMASRILGMGD 298


>gi|307546454|ref|YP_003898933.1| signal recognition particle subunit SRP54 [Halomonas elongata DSM
           2581]
 gi|307218478|emb|CBV43748.1| K03106 signal recognition particle, subunit SRP54 [Halomonas
           elongata DSM 2581]
          Length = 471

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 157/305 (51%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + +  I    RL +D V++ L ++   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FQNLSDRLSQTLKSIKGQARLTEDNVKDTLREVRRALLEADVALPVVKAFIDRVRERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+ +  V + +  ++   ++      S  P V+L+ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQQFVKIVQQELEAIMGEANEGLALKGS--PAVVLMAGLQGAGKTTSVAKL 119

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAIDQL+  A     DF  S        +A  A K A+
Sbjct: 120 ARYLREREKKKVLVVSADVYRPAAIDQLETLAKEVEVDFFPSSSDQQPVDIAEAAIKHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+++DTAGRL  +  +MA I  +   +      +P   L V+DA TGQ+A    +
Sbjct: 180 IQFHDVVLVDTAGRLAIDEAMMAEIQALNSAV------SPDETLFVVDAMTGQDAANTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK DG ARGG  + +      P+ F+GVGE ++ LEPF     ++ I
Sbjct: 234 AFHEALPLTGVILTKADGDARGGAALSVRHITGKPIKFMGVGEKVDALEPFHPDRVASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|269836377|ref|YP_003318605.1| signal recognition particle protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269785640|gb|ACZ37783.1| signal recognition particle protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 504

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 145/285 (50%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           ++ + +D+ +RE +   L+ +D+   V +  V  +  +   ++V       Q+V+  V +
Sbjct: 22  LTEQDVDEAMRE-VRRALLEADVNYKVVRDFVSAVRERAVGEEVLKALTPAQQVISIVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + K+L     P        P +++VVG+ G GKTT + K++  +   G + ++ A D +
Sbjct: 81  ELIKILGEERVPLQL-AQVPPTIVMVVGLQGSGKTTHVAKIANLLKKEGRRPLMVAADVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAIDQL+    +           ++   +A  A K A+ +   V++IDTAGRL  +  
Sbjct: 140 RPAAIDQLQTLGGQIDVPVYSEGTKANPVDIAKNAVKLARDRGYTVVLIDTAGRLQIDEP 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M  + ++   +K      PH +L V DA TGQ A+   + FH     TGL++TKMDG A
Sbjct: 200 MMQEVERIAEAVK------PHEILLVADAMTGQEAVNVAQEFHRRLALTGLVLTKMDGDA 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I     +P+ ++G GE I+ +EPF     ++ I G  D
Sbjct: 254 RGGAALSIRSVVGVPIKYIGTGERIDAVEPFYPDRLASRILGMGD 298


>gi|88797967|ref|ZP_01113554.1| signal recognition particle protein [Reinekea sp. MED297]
 gi|88779164|gb|EAR10352.1| signal recognition particle protein [Reinekea sp. MED297]
          Length = 473

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 161/310 (51%), Gaps = 24/310 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L + +  I    +L +D ++  L ++   L+ +D+ + V +  ++ + T+   
Sbjct: 2   FNSLSERLGQTLKQITGQAKLTEDNIKSSLREVRMALLEADVALPVVKAFIDAVKTRAVG 61

Query: 77  KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIG 129
           ++VS      Q+ L  V SEL+H M     +    D  +  P VIL+ G+ G GKTT   
Sbjct: 62  QEVSQALNPGQQFLKIVQSELVHVMG---EQNEALDLKTQPPAVILMAGLQGAGKTTTTA 118

Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLS+ +S+    KVM+ + D +R AAI QL+  A    A F  S++     A+   A   
Sbjct: 119 KLSRFLSEREKKKVMVVSADVYRPAAIKQLETLAGEVGALFHPSDVAQKPEAIVKGAIDA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ + VDVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A   
Sbjct: 179 ARKQAVDVLIVDTAGRLAVDEAMMAEIQTLHKAVN------PIETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG++++K DG +RGG  + +      P+ F+G+GE ++ LEPF     ++
Sbjct: 233 AKAFSDALPLTGVVLSKADGDSRGGAALSVRHITGKPIKFMGMGEKVDALEPFYPDRIAS 292

Query: 309 VITGCLDYGE 318
            I   LD G+
Sbjct: 293 RI---LDMGD 299


>gi|313673954|ref|YP_004052065.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940710|gb|ADR19902.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 448

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 141/270 (52%), Gaps = 16/270 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYA----KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L+ +D+   V +K ++ + +K       K ++  +V     +L+H  L+ +        +
Sbjct: 38  LLEADVNYKVVKKFIDNVQSKAIGEIVLKSLTPDQVFI---KLVHDELVSILGSHTSKIN 94

Query: 109 HRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            +P+   VI++VG+ G GKTT  GKL+K     G   +L A D +R AAIDQL +  ++ 
Sbjct: 95  LKPNPPTVIMLVGLQGSGKTTTAGKLAKYFQKDGRSTLLVADDIYRPAAIDQLIVLGNQL 154

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             D    +   +A  +A     QA+    D++IIDTAGRLH +  LM    K ++ +K  
Sbjct: 155 KTDVFYDKESKNATEIAVRGVDQAKKSAKDIVIIDTAGRLHIDEDLM----KELKSIK-- 208

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           +   P  +L V DA  GQ+A+   + F+   G TG+I TK+DG ARGG  + I+    +P
Sbjct: 209 NAVNPDEILFVADAMIGQDAVNVAKQFNEAIGITGVIFTKLDGDARGGAALSIMEVTGVP 268

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G+GE ++  E F     ++ I G  D
Sbjct: 269 IKFVGIGEKLDAFELFHPDRMASRILGMGD 298


>gi|24113948|ref|NP_708458.1| signal recognition particle protein [Shigella flexneri 2a str. 301]
 gi|30064009|ref|NP_838180.1| signal recognition particle protein [Shigella flexneri 2a str.
           2457T]
 gi|24053055|gb|AAN44165.1| GTP-binding export factor binds to signal sequence, GTP and RNA
           [Shigella flexneri 2a str. 301]
 gi|30042265|gb|AAP17990.1| GTP-binding export factor binds to signal sequence, GTP and RNA
           [Shigella flexneri 2a str. 2457T]
 gi|281602019|gb|ADA75003.1| GTP-binding export factor binds to signal sequence, GTP and RNA
           [Shigella flexneri 2002017]
 gi|313648288|gb|EFS12732.1| signal recognition particle protein [Shigella flexneri 2a str.
           2457T]
 gi|332753356|gb|EGJ83736.1| signal recognition particle protein [Shigella flexneri 4343-70]
 gi|332755593|gb|EGJ85956.1| signal recognition particle protein [Shigella flexneri 2747-71]
 gi|332765588|gb|EGJ95801.1| signal recognition particle protein [Shigella flexneri 2930-71]
 gi|332999385|gb|EGK18970.1| signal recognition particle protein [Shigella flexneri VA-6]
 gi|333000795|gb|EGK20369.1| signal recognition particle protein [Shigella flexneri K-218]
 gi|333000982|gb|EGK20552.1| signal recognition particle protein [Shigella flexneri K-272]
 gi|333015514|gb|EGK34853.1| signal recognition particle protein [Shigella flexneri K-227]
 gi|333015805|gb|EGK35141.1| signal recognition particle protein [Shigella flexneri K-304]
          Length = 453

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
              + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GNFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|294101553|ref|YP_003553411.1| signal recognition particle protein [Aminobacterium colombiense DSM
           12261]
 gi|293616533|gb|ADE56687.1| signal recognition particle protein [Aminobacterium colombiense DSM
           12261]
          Length = 449

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 8/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P + ++VG+ G GKTT   K++K++ +A    ++ A D  R AAI+QLK+ A ++  
Sbjct: 97  SKPPTLCMMVGLQGSGKTTSAVKIAKRIQNAH-NPLVVACDLRRPAAIEQLKVLAQQSKV 155

Query: 168 DFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            F     G+ D   +A EA   A+    DV+I DTAGRLH +  LM  + ++  ++    
Sbjct: 156 AFYGPSGGTQDVIKVAKEALAYAEDHLNDVIIFDTAGRLHVDEDLMEELSRLKDLVN--- 212

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              PH +L V+DA TGQ A++    FH     TG++++K+DG ARGG  + I  T ++P+
Sbjct: 213 ---PHEILLVVDAMTGQEAVKVATSFHEKLSLTGVVLSKLDGDARGGAALAIRATTQVPI 269

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GVGEGI+ +E F AK  +  I G  D
Sbjct: 270 KFAGVGEGIDAIELFDAKRMAQRIIGMGD 298


>gi|152971460|ref|YP_001336569.1| signal recognition particle protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206578967|ref|YP_002237051.1| signal recognition particle protein [Klebsiella pneumoniae 342]
 gi|238896056|ref|YP_002920792.1| signal recognition particle protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|288934014|ref|YP_003438073.1| signal recognition particle protein [Klebsiella variicola At-22]
 gi|290510926|ref|ZP_06550295.1| signal recognition particle protein [Klebsiella sp. 1_1_55]
 gi|150956309|gb|ABR78339.1| 4.5S-RNP protein, GTP-binding export factor [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206568025|gb|ACI09801.1| signal recognition particle protein [Klebsiella pneumoniae 342]
 gi|238548374|dbj|BAH64725.1| SRP component with 4.5S RNA [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|288888743|gb|ADC57061.1| signal recognition particle protein [Klebsiella variicola At-22]
 gi|289775919|gb|EFD83918.1| signal recognition particle protein [Klebsiella sp. 1_1_55]
          Length = 454

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/212 (37%), Positives = 116/212 (54%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A++  
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++G     +   A K+A+ K  DVL++DTAGRLH +  +M  I  +        
Sbjct: 157 VDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKHV-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE    LEPF     ++ I G  D
Sbjct: 268 KPIKFLGVGEKTEALEPFHPDRVASRILGMGD 299


>gi|92115132|ref|YP_575060.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Chromohalobacter salexigens DSM 3043]
 gi|91798222|gb|ABE60361.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Chromohalobacter salexigens DSM 3043]
          Length = 474

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 155/305 (50%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   +  I    +L +D +++ L ++   L+ +D+ + V +  VE +  +   
Sbjct: 2   FESLTERLSGTLKSITGQAKLTEDNIKDTLREVRRALLEADVALPVVKAFVERVRERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+ +  V + +  ++   ++  +   S  P VIL+ G+ G GKTT + KL
Sbjct: 62  QEVSRSLSPGQQFVKIVQQELEAIMGEANEALSLKSS--PSVILMAGLQGAGKTTSVAKL 119

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAIDQL+  A+    DF  S        +A  A K A+
Sbjct: 120 ARFLREREKKKVLVVSADVYRPAAIDQLETLANEVEVDFFPSTSAQRPVEIAQAAIKHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D++I+DTAGRL  +  +M  I  +           P   L V+DA TGQ+A    +
Sbjct: 180 IQFHDIVIVDTAGRLSVDQAMMEEIQALHGAT------TPDETLFVVDAMTGQDAANTAQ 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK DG ARGG  + +      P+ F+G+GE ++ LEPF     ++ I
Sbjct: 234 AFHEALPLTGVILTKADGDARGGAALSVRHVTGKPIKFMGMGEKVDALEPFHPDRVASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|46130818|ref|XP_389140.1| hypothetical protein FG08964.1 [Gibberella zeae PH-1]
          Length = 521

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 147/297 (49%), Gaps = 21/297 (7%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS------ 80
           ++   +T++   + LD+   +E+   L+ +D+ V +  ++ + + T    K++       
Sbjct: 9   RINAAVTNLTREQNLDE---KEICAALLEADVNVKLVGQLRKSIKTTVNFKELPPAVNKK 65

Query: 81  --VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
             +Q+ ++D  EL+ K++ P ++PF      + +VI+ VG+ G GKTT   KL++     
Sbjct: 66  RLIQKAVFD--ELV-KLVDPHAEPFRPK-KGKSNVIMFVGLQGAGKTTTCTKLARHYQSR 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G K  L   DTFR+ A DQLK  A +    +  S   +D A +A     Q + ++ +V+I
Sbjct: 122 GFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAEVARAGVDQFKKERFEVII 181

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DT+GR    S L   +  +   +K      P   + VLDA+ GQ A  Q + F   A  
Sbjct: 182 VDTSGRHRQESALFQEMVDIQEAIK------PDETIMVLDASIGQQAESQAKAFKEAADF 235

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             +I+TK DG A GGG I  V     P+ F+G GE + D E F  + F   + G  D
Sbjct: 236 GAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDFEKFAPQQFVQKLLGMGD 292


>gi|85860175|ref|YP_462377.1| signal recognition particle GTPase [Syntrophus aciditrophicus SB]
 gi|85723266|gb|ABC78209.1| signal recognition particle GTPase [Syntrophus aciditrophicus SB]
          Length = 444

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 165/305 (54%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSR-RLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
           F + + KL EG+   +  R RLD+  ++E L+++   L+ +D+   V +  +EE+ ++  
Sbjct: 2   FENLAEKL-EGVFKRLKGRGRLDEENIKEALKEIRMALLEADVNFKVVKDFIEEVRSRAV 60

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+++  V + + ++L   S    +  S  P  I++VG+ G GKTT   K
Sbjct: 61  GQEVLESITPGQQIVKIVHDRLVELLGGTSSQLRFG-SRFPAPIMLVGLQGCGKTTTAVK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K ++  G +  L + D +R AA++QL++ A +  A    ++   D   +  +A ++A+
Sbjct: 120 LAKVLAKGGKRAGLVSADVYRPAAMEQLRVMAQKIGAPAFNADSSQDPVKICVQAVEEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +VLI+DTAGRL  ++ +M  + ++   +       P  +L V DA TGQ+A+    
Sbjct: 180 RNGYEVLILDTAGRLAIDTQMMEELKQIKNAVN------PSEILFVADAMTGQDAVNVAA 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ + G  G+IMTKMDG ARGG  + +      P+ ++G+GE I+ LE F  +  ++ I
Sbjct: 234 KFNELLGIDGVIMTKMDGDARGGAALSLKAVMGKPIKYVGIGEKIDALEVFHPERMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|90580366|ref|ZP_01236173.1| putative signal recognition particle protein [Vibrio angustum S14]
 gi|90438668|gb|EAS63852.1| putative signal recognition particle protein [Vibrio angustum S14]
          Length = 455

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 153/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL DD +++ L ++   L+ +D+ + V ++ V+ +  K  A
Sbjct: 2   FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130
               V + L    E I  +   L      +    D S   P VIL+ G+ G GKTT +GK
Sbjct: 60  VGTEVSKSLTPGQEFIKIVQAELEAVMGEENEGLDLSCQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A     DF  S +      +A  A +  
Sbjct: 120 LGKLLKERDSKKVLVVSADVYRPAAIKQLETLAGDVGIDFFPSNVEQKPVEIAKAALEHG 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DV+I+DTAGRLH +  +M  I  + + L       P   L V+DA TGQ+A    
Sbjct: 180 KLKFYDVVIVDTAGRLHVDEEMMDEIKDVHKTLN------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPNRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|262043856|ref|ZP_06016945.1| fifty-four-like protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330013034|ref|ZP_08307556.1| signal recognition particle protein [Klebsiella sp. MS 92-3]
 gi|259038790|gb|EEW39972.1| fifty-four-like protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533620|gb|EGF60334.1| signal recognition particle protein [Klebsiella sp. MS 92-3]
          Length = 486

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/212 (37%), Positives = 116/212 (54%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A++  
Sbjct: 129 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 188

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++G     +   A K+A+ K  DVL++DTAGRLH +  +M  I  +        
Sbjct: 189 VDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKHV-------- 240

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 241 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 299

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE    LEPF     ++ I G  D
Sbjct: 300 KPIKFLGVGEKTEALEPFHPDRVASRILGMGD 331


>gi|310766680|gb|ADP11630.1| signal recognition particle protein [Erwinia sp. Ejp617]
          Length = 453

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 115/212 (54%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A++  
Sbjct: 97  AQPPAVILMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A +QA+ K  DVL++DTAGRLH +  +M  I ++        
Sbjct: 157 VDFCPSDLSQRPVDIVKNALQQAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A      F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTARAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+GVGE    LEPF     ++ I G  D
Sbjct: 268 KPIKFMGVGEKTEALEPFYPDRIASRILGMGD 299


>gi|260588673|ref|ZP_05854586.1| signal recognition particle protein [Blautia hansenii DSM 20583]
 gi|331081978|ref|ZP_08331106.1| signal recognition particle protein [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541148|gb|EEX21717.1| signal recognition particle protein [Blautia hansenii DSM 20583]
 gi|330405573|gb|EGG85103.1| signal recognition particle protein [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 448

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++    RL +  V+  L+++   L+ +D+   V ++ ++ +  +   
Sbjct: 3   FESLTDKLQNVFKNLRKKGRLTEADVKAALKEVKMALLEADVSFKVVKQFMKAVQERAIG 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +        +   V+++VG+ G GKTT   KL
Sbjct: 63  QDVMSGLNPGQMVIKIVNEELVKLMGSETTEIALKSGNEVTVLMMVGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G K +LAA D +R AAI QL++  ++   D       +    +A  A++ A+ 
Sbjct: 123 AGKLKSKGKKPLLAACDVYRPAAIKQLQVNGEKQGVDVFSMGDKNSPVDIAKAAYEHAKN 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K +VLI+DTAGRLH +  +M  + K+   +           L V+DA TGQ+A+   E 
Sbjct: 183 EKYNVLILDTAGRLHIDEDMMEELEKIKEAI------TVDQTLLVVDAMTGQDAVNVAET 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+I+TKMDG  RGG  + I      P+ ++G+GE ++DLE F  +  ++ I 
Sbjct: 237 FGEKVGIDGVILTKMDGDTRGGAALSIKAISGKPILYVGMGEKLSDLEQFYPERMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|110806722|ref|YP_690242.1| signal recognition particle protein [Shigella flexneri 5 str. 8401]
 gi|110616270|gb|ABF04937.1| Signal recognition particle protein [Shigella flexneri 5 str. 8401]
          Length = 453

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
              + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GNFLHEKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|317121794|ref|YP_004101797.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermaerobacter marianensis DSM 12885]
 gi|315591774|gb|ADU51070.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermaerobacter marianensis DSM 12885]
          Length = 445

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 135/258 (52%), Gaps = 21/258 (8%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHV-ILVV 117
           AV Q+++E L           Q+V+    +++H  L  L   +    D    P V +++V
Sbjct: 60  AVGQEVLESL--------TPAQQVI----KIVHDELTQLMGGQQARLDLGGAPPVPVMLV 107

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G+ G GKTT   KL++ ++  G + +L A D +R AA++QL     +            D
Sbjct: 108 GLQGSGKTTTAAKLARLLARQGRQPLLVAADVYRPAAVEQLVTLGQQIQLPVHAPGTDRD 167

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A E   +A+ +  DV+IIDTAGRLH +  LM  + ++ + +      AP  +L V+
Sbjct: 168 PVDIAREGVAEARRRGRDVVIIDTAGRLHIDDALMEELERIRQAV------APREILLVV 221

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQ+A+   E FH   G  G+++TK+DG ARGG  + +      P+ F+G+GE ++ 
Sbjct: 222 DAMTGQDAVNVAETFHRRLGIDGVVLTKLDGDARGGAALSVRAVTGRPIKFVGLGERVDQ 281

Query: 298 LEPFVAKDFSAVITGCLD 315
           LEPF  +  ++ I G  D
Sbjct: 282 LEPFHPERMASRILGMGD 299


>gi|239501248|ref|ZP_04660558.1| signal recognition particle protein [Acinetobacter baumannii AB900]
          Length = 469

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 158/295 (53%), Gaps = 25/295 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127
           ++V  Q        +++YD    + KM+   ++    D S +P V+ L+ G+ G GKTT 
Sbjct: 62  QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116

Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL++ + +    KVM  + D +R AAI QL+  +    A F+ S+       +   A 
Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSAEVGAGFIPSDPSEKPIDIVNRAI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+ +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A 
Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PTETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
              + F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF
Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPF 285


>gi|169634139|ref|YP_001707875.1| GTP-binding signal recognition particle protein [Acinetobacter
           baumannii SDF]
 gi|169797016|ref|YP_001714809.1| GTP-binding signal recognition particle protein [Acinetobacter
           baumannii AYE]
 gi|184157071|ref|YP_001845410.1| Signal recognition particle GTPase [Acinetobacter baumannii ACICU]
 gi|213156580|ref|YP_002318241.1| signal recognition particle protein [Acinetobacter baumannii
           AB0057]
 gi|215484476|ref|YP_002326711.1| signal recognition particle protein [Acinetobacter baumannii
           AB307-0294]
 gi|260555692|ref|ZP_05827912.1| signal recognition particle protein [Acinetobacter baumannii ATCC
           19606]
 gi|301347727|ref|ZP_07228468.1| signal recognition particle protein [Acinetobacter baumannii AB056]
 gi|301512475|ref|ZP_07237712.1| signal recognition particle protein [Acinetobacter baumannii AB058]
 gi|301594393|ref|ZP_07239401.1| signal recognition particle protein [Acinetobacter baumannii AB059]
 gi|332852104|ref|ZP_08433931.1| signal recognition particle protein [Acinetobacter baumannii
           6013150]
 gi|332867502|ref|ZP_08437655.1| signal recognition particle protein [Acinetobacter baumannii
           6013113]
 gi|332872647|ref|ZP_08440615.1| signal recognition particle protein [Acinetobacter baumannii
           6014059]
 gi|169149943|emb|CAM87837.1| 4.5S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Acinetobacter
           baumannii AYE]
 gi|169152931|emb|CAP01972.1| 4.5S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Acinetobacter
           baumannii]
 gi|183208665|gb|ACC56063.1| Signal recognition particle GTPase [Acinetobacter baumannii ACICU]
 gi|213055740|gb|ACJ40642.1| signal recognition particle protein [Acinetobacter baumannii
           AB0057]
 gi|213988852|gb|ACJ59151.1| signal recognition particle protein [Acinetobacter baumannii
           AB307-0294]
 gi|260410603|gb|EEX03901.1| signal recognition particle protein [Acinetobacter baumannii ATCC
           19606]
 gi|322506970|gb|ADX02424.1| Signal recognition particle GTPase [Acinetobacter baumannii 1656-2]
 gi|323516837|gb|ADX91218.1| Signal recognition particle GTPase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332729476|gb|EGJ60815.1| signal recognition particle protein [Acinetobacter baumannii
           6013150]
 gi|332733919|gb|EGJ65064.1| signal recognition particle protein [Acinetobacter baumannii
           6013113]
 gi|332739176|gb|EGJ70035.1| signal recognition particle protein [Acinetobacter baumannii
           6014059]
          Length = 469

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 158/295 (53%), Gaps = 25/295 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127
           ++V  Q        +++YD    + KM+   ++    D S +P V+ L+ G+ G GKTT 
Sbjct: 62  QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116

Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL++ + +    KVM  + D +R AAI QL+  +    A F+ S+       +   A 
Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSAEVGAGFIPSDPSEKPIDIVNRAI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+ +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A 
Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PTETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
              + F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF
Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPF 285


>gi|110597444|ref|ZP_01385731.1| signal recognition particle protein [Chlorobium ferrooxidans DSM
           13031]
 gi|110340988|gb|EAT59459.1| signal recognition particle protein [Chlorobium ferrooxidans DSM
           13031]
          Length = 449

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 137/268 (51%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   VA+K++E++  K   + V       Q ++  V + + +++    KP N   
Sbjct: 38  LLGADVNYKVAKKLIEDIREKSLGEQVIKSVSPAQMIVKIVYDELTELMGGEQKPLNLSP 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
              P VI+V G+ G GKTT   KL+ ++   G   ML A D +R AAIDQLK  A +   
Sbjct: 98  KKLPAVIMVAGLQGSGKTTFCAKLALRLKKNGKNPMLVAADVYRPAAIDQLKALALQVEV 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                E   DA   A +  + A++   DV+IIDTAGRL  + ++MA    +   LK    
Sbjct: 158 PVFAIE-EQDALKAALQGLEAARSGARDVVIIDTAGRLQIDDLMMAEAESLKHALK---- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+  GQ A+   + F+      G+++TK+DG ARGG  + I    + P+ 
Sbjct: 213 --PDELLFVVDSMMGQEAVNTAKAFNDRLDFDGVVLTKLDGDARGGAALSIRQVVEKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+ +GE ++DL+ F     +  I G  D
Sbjct: 271 FISIGEKVDDLDVFYPDRMAQRILGMGD 298


>gi|292900328|ref|YP_003539697.1| signal recognition particle protein [Erwinia amylovora ATCC 49946]
 gi|291200176|emb|CBJ47304.1| signal recognition particle protein [Erwinia amylovora ATCC 49946]
          Length = 453

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 116/212 (54%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A++  
Sbjct: 97  AQPPAVILMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A +QA+ K  DVL++DTAGRLH +  +M  I ++        
Sbjct: 157 VDFCPSDLTQQPVDIVKNALQQAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+GVGE    LEPF     ++ I G  D
Sbjct: 268 KPIKFMGVGEKTEALEPFYPDRIASRILGMGD 299


>gi|78356147|ref|YP_387596.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218552|gb|ABB37901.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 512

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 152/285 (53%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           ++   + +G+RE +   L+ +D+   V ++ ++ +  K   +DV       Q+V+  V++
Sbjct: 22  LTEENVQEGLRE-VRLALLEADVNFKVVKQFIDRVRDKCLGQDVLKGLNPAQQVIKIVND 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + ++L   +   +     +P+VI++VG+ G GKTT  GKL+  +  + ++  LA  D +
Sbjct: 81  EMIELLGGETTGLDLR-GQQPYVIMMVGLQGSGKTTSTGKLANHLRKSKMRPYLAPADVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAIDQLK  A +       S +  +   +A  A   A+ ++ +V+I+DTAGRLH +  
Sbjct: 140 RPAAIDQLKTLAAQLDLPVYDSTVQMNPVDIARNAVAAAREQQCNVVILDTAGRLHIDET 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +  +   +      AP  +L V DA TGQ+A+   + F+     TG+++TKMDG A
Sbjct: 200 LMQELVAIKEAV------APQEILFVADAMTGQDAVTVADAFNNALDITGVVLTKMDGDA 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I       V F+G+GE ++DLE F     ++ I G  D
Sbjct: 254 RGGAALSIKTVTGKSVKFVGMGEKLSDLEVFHPDRIASRILGMGD 298


>gi|20093371|ref|NP_619446.1| signal recognition particle protein Srp54 [Methanosarcina
           acetivorans C2A]
 gi|23822174|sp|Q8THD0|SRP54_METAC RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|19918737|gb|AAM07926.1| signal recognition particle, 54 kDa protein [Methanosarcina
           acetivorans C2A]
          Length = 440

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 153/301 (50%), Gaps = 30/301 (9%)

Query: 28  LKEGITDIISSRRLDD-GVREELEDL---LIRSDIGV----AVAQKIVEELLTKRYAKDV 79
           L+  +  +I + R+D+  V E ++D+   L+++D+ V     ++Q+I E  + +     +
Sbjct: 10  LQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEEPPAGM 69

Query: 80  S----VQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           +    V R++Y ++ E+I K           +   +P  I++VG+ G GKTT   KL++ 
Sbjct: 70  NPREHVIRIVYQELMEIIGK---------GAEIQLKPQTIMMVGLQGSGKTTSAAKLARY 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               GLK  + A DTFR  A  QLK  A++ +  F   E   DA  +     K  +  K 
Sbjct: 121 FQRKGLKAGVVAADTFRPGAYHQLKTLAEKLNVGFYGEEGNPDAVEITKNGLKALE--KY 178

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D+ I+DTAGR    + L+  + ++  V K      P     VLDA  GQ A +Q   F+ 
Sbjct: 179 DIRIVDTAGRHALEADLIEEMERIHAVAK------PDHKFMVLDAGIGQQASQQAHAFND 232

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
             G TG+I+TK+DGTA+GGG +  V   K P+ F+GVGE   D E F A  F + + G  
Sbjct: 233 SVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMG 292

Query: 315 D 315
           D
Sbjct: 293 D 293


>gi|317133004|ref|YP_004092318.1| signal recognition particle protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315470983|gb|ADU27587.1| signal recognition particle protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 443

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 153/304 (50%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL      + S  +L +  VR+ + ++   L+ +D+   +A++ V ++  +   
Sbjct: 3   FEGLSEKLSAAFKRLRSKGKLTEADVRQAMREVRLALLEADVNYKIAKQFVNDVTERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+V+  V+E +  ++        +  S  P VIL+ G+ G GKTT   KL
Sbjct: 63  SAVLESLTPAQQVIKIVNEELTALMGGEQSRIRY-ASKPPTVILLCGLQGSGKTTHAAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  M   G + +LAA D +R AAI QL++  ++     V  +   D   +A  A   A+ 
Sbjct: 122 ALSMKKQGKRPLLAACDVYRPAAIKQLQVVGEKAGVP-VFEQGQGDPVKIAKAALHHAKD 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLI+DTAGRLH +  LM  + ++   ++      P  +L V+DA TGQ+A+     
Sbjct: 181 HGSDVLILDTAGRLHVDEALMDELKRIKAAVE------PDEILLVVDAMTGQDAVNVASS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ V G  G+I+TK+DG  RGG  + +      P+ F G GE ++DLEPF  +  ++ I 
Sbjct: 235 FNEVLGIDGVILTKLDGDTRGGAALSVRAVTGKPIKFAGTGEKLDDLEPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|241759064|ref|ZP_04757175.1| signal recognition particle protein [Neisseria flavescens SK114]
 gi|241320666|gb|EER56919.1| signal recognition particle protein [Neisseria flavescens SK114]
          Length = 456

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  +   ++V       Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNTVKEQALGQEVVGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   S  P ++L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVSP-PAIVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|261342041|ref|ZP_05969899.1| signal recognition particle protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288315697|gb|EFC54635.1| signal recognition particle protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 453

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 117/212 (55%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A++  
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A K+A+ K  DVL++DTAGRLH +  +M  I ++        
Sbjct: 157 VDFFPSDVAQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 268 KPIKFLGVGEKTDALEPFHPDRIASRILGMGD 299


>gi|302349271|ref|YP_003816909.1| Signal recognition 54 kDa protein [Acidilobus saccharovorans
           345-15]
 gi|302329683|gb|ADL19878.1| Signal recognition 54 kDa protein [Acidilobus saccharovorans
           345-15]
          Length = 444

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 148/284 (52%), Gaps = 20/284 (7%)

Query: 43  DGVREELEDL---LIRSDIGVAVAQK----IVEELLTKRYAKDVSVQ----RVLYDVSEL 91
           D V E + DL   LIR+D+ VA+ ++    I +  L +     VS +    +++Y+  EL
Sbjct: 21  DSVEEFIRDLQRELIRADVNVALVKRLSDAIRQRALEQEPPPGVSRRDWFLKIVYE--EL 78

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +   +    +P + +    P VIL+VGV G GKTT  GKL++  S  G +V L   DT+R
Sbjct: 79  VK--VFGGEEPPSVEPRKVPWVILLVGVQGSGKTTTAGKLARFYSARGYRVGLVETDTYR 136

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
             A++QL+  A  + A F     G  A  +A    K+ +++   V+I+DTAGR H     
Sbjct: 137 PGALEQLRTLAQMSGALFYGEPAGR-AEEIASRGVKELESRGAQVIIVDTAGR-HGYGDE 194

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
            A + +M R+    D  +P  V  V+DA  GQ A      FH       +I+TK+DGTA+
Sbjct: 195 QALLDEMRRIA---DAVSPDEVALVVDAAIGQRAFDLARRFHEATPIGTIIVTKLDGTAK 251

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GGG++  V      V F+G GE +++LEPF  + F + I G  D
Sbjct: 252 GGGVLSAVAATGARVKFVGTGEKVDELEPFDPQGFVSRIMGLGD 295


>gi|325680130|ref|ZP_08159696.1| signal recognition particle protein [Ruminococcus albus 8]
 gi|324108205|gb|EGC02455.1| signal recognition particle protein [Ruminococcus albus 8]
          Length = 457

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 150/280 (53%), Gaps = 18/280 (6%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96
           VRE ++++   L+ +D+   V +  V  +  +   +DV       Q+V+  V++ + K++
Sbjct: 28  VREAMKEVKMALLEADVSYKVVKDFVANVTERSVGEDVLKSLTPGQQVIKIVNDELVKLM 87

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              +   N+  S  P VI++ G+ G GKTT   KL+K     G + +L A D +R AAID
Sbjct: 88  GEANSKINFP-SKPPCVIMMCGLQGSGKTTHAAKLAKMFKRQGNRPLLIAADVYRPAAID 146

Query: 157 QLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           QLKI A++  AD    E+G  D   +  +  KQA+    D++IIDTAGRLH +  LM  +
Sbjct: 147 QLKIVAEK--ADVPVFEMGQIDPRKIVKQGLKQAKDYGNDLVIIDTAGRLHIDEELMDEL 204

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             + ++ +      P  ++ V+DA  GQ+A++    F    G   +I+TK+D   RGG  
Sbjct: 205 KDIKKIAE------PSEIMLVVDAMIGQDAVKVASSFDEALGIDSVILTKLDSDTRGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + ++     P+ F+G+GE +++ EPF  +  ++ I G  D
Sbjct: 259 LSVLAVTGKPIKFVGMGEKLDEFEPFHPERMASRILGMGD 298


>gi|319639652|ref|ZP_07994399.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria mucosa C102]
 gi|317399223|gb|EFV79897.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria mucosa C102]
          Length = 456

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  +   ++V       Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNTVKEQALGQEVVGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   S  P ++L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVSP-PAIVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|304311868|ref|YP_003811466.1| Signal recognition particle protein [gamma proteobacterium HdN1]
 gi|301797601|emb|CBL45822.1| Signal recognition particle protein [gamma proteobacterium HdN1]
          Length = 464

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 146/286 (51%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           +D +++ L ++   L+ +D+ + V +  +E++  +   ++V       Q  +  V+E + 
Sbjct: 24  EDNIKDTLREVRMALLEADVALPVVKDFIEQVKERAIGQEVMKSLSPDQAFIKIVNEQLI 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
            ++   +   N      P VIL+ G+ G GKTT + KL+  +      KVM+A+ D +R 
Sbjct: 84  HVMGDANDELNL-ACQPPAVILMAGLQGAGKTTTVAKLAAFLIGRQKKKVMVASADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI QL+  AD   A F  S I  D   +A  A +QA+ K +D++IIDTAGRL  +  +M
Sbjct: 143 AAIKQLETLADAVGAQFFPSTIEQDPVDIASAAIEQARKKFMDIVIIDTAGRLAVDQEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I ++         HA   P   L V+DA TGQ+A      F      TG+++TK DG 
Sbjct: 203 DEIRRL---------HAAITPIETLFVVDAMTGQDAANTARAFGEALPLTGVVLTKTDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ARGG  + +      P+ F+GVGE  + LEPF     ++ I G  D
Sbjct: 254 ARGGAALSVRAITGKPIKFIGVGEKTDALEPFYPDRIASRILGMGD 299


>gi|261380661|ref|ZP_05985234.1| signal recognition particle protein [Neisseria subflava NJ9703]
 gi|284796646|gb|EFC51993.1| signal recognition particle protein [Neisseria subflava NJ9703]
          Length = 456

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  +   ++V       Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNTVKEQALGQEVVGSLTPDQAFIGVVNQALI 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   S  P ++L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVSP-PAIVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|161870769|ref|YP_001599942.1| signal recognition particle protein [Neisseria meningitidis 053442]
 gi|161596322|gb|ABX73982.1| signal recognition particle protein [Neisseria meningitidis 053442]
          Length = 456

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT  GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|332754035|gb|EGJ84407.1| signal recognition particle protein [Shigella flexneri K-671]
          Length = 340

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
              + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GNFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|28210935|ref|NP_781879.1| signal recognition particle, subunit ffh/srp54 [Clostridium tetani
           E88]
 gi|28203374|gb|AAO35816.1| signal recognition particle, subunit ffh/srp54 [Clostridium tetani
           E88]
          Length = 451

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 154/285 (54%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           +S + + + +RE +   L+ +D+   + +  V+ +  K   K+V       Q+V+  V++
Sbjct: 23  LSEKDIKEAMRE-VRLALLEADVNYKIVKDFVKSVSEKCNGKEVLESLTPGQQVVKIVND 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + +++       N++ +++P VI++VG+ G GKTT+ GKL+ ++     K +L A D +
Sbjct: 82  ELIELMGSKESEINFE-ANKPTVIMLVGLQGAGKTTMAGKLALQLRKKNKKPLLVACDIY 140

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI QL++   +           ++   ++  A K A+   ++ +IIDTAGRLH +  
Sbjct: 141 RPAAIKQLQVVGSQIDVPVFTLGDKTNPVDISKAAIKHAKENNLNTIIIDTAGRLHIDEN 200

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +  +   ++      P+ VL V+D+ TGQ+A+   E F+     +G+I+TK+DG  
Sbjct: 201 LMDELKSIKENIE------PNEVLLVVDSMTGQDAINVAESFNEKLNISGVILTKLDGDT 254

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+G+GE +NDLE F  +  ++ I G  D
Sbjct: 255 RGGAALSIKAMTGKPIKFIGIGEKMNDLEVFYPERMASRILGMGD 299


>gi|206900972|ref|YP_002251247.1| signal recognition particle protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740075|gb|ACI19133.1| signal recognition particle protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 436

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 113/208 (54%), Gaps = 8/208 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S +P +ILVVG+ G GKTT   KL+ K++    +V+L   DTFR AA  QL+I A++   
Sbjct: 97  SKKPGIILVVGLQGSGKTTTCAKLAYKLAQEQRRVLLVGADTFRPAAGKQLQILAEKIKV 156

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                  G     +   A + A+ K  DV+I+DT GRLH +  +M  + ++ +       
Sbjct: 157 PVYVD--GKGPFEIIDGALEVAKEKLSDVMIVDTTGRLHIDEEMMNELNELNK------R 208

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
           + P  +L V+D  TGQ+A+   E F+     TG+I+TKMDG ARGG  + +      P+ 
Sbjct: 209 YNPSEILLVVDGMTGQDAVNIAEKFNEKLPLTGVILTKMDGDARGGAALSVKAITGKPIK 268

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+GVGE I DLE F     ++ I G  D
Sbjct: 269 FIGVGEKIEDLEYFYPDRLASRILGMGD 296


>gi|257086986|ref|ZP_05581347.1| signal recognition particle protein [Enterococcus faecalis D6]
 gi|256995016|gb|EEU82318.1| signal recognition particle protein [Enterococcus faecalis D6]
 gi|315027856|gb|EFT39788.1| signal recognition particle protein [Enterococcus faecalis TX2137]
          Length = 472

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 23/309 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +  V+E + ++   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129
             +V       Q+++  V E + K L   S+    + S + P VI++ G+ G GKTT  G
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLG--SETVELNKSPKIPTVIMMTGLQGAGKTTFTG 119

Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAF 186
           KL+K  M     + +L AGD +R AAIDQLK+   +   +    ++G+DA    +  +  
Sbjct: 120 KLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGL 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+ KK D ++IDTAGRLH +  LM  + K I+ L       P+ +L V+DA TGQ+A+
Sbjct: 178 ALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKELAN-----PNEILLVVDAMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     
Sbjct: 232 NVADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTSAPIKFVGSGEKLTDLEIFHPDRM 291

Query: 307 SAVITGCLD 315
           S+ I G  D
Sbjct: 292 SSRILGMGD 300


>gi|325128967|gb|EGC51819.1| signal recognition particle protein [Neisseria meningitidis N1568]
 gi|325131638|gb|EGC54344.1| signal recognition particle protein [Neisseria meningitidis M6190]
 gi|325139014|gb|EGC61561.1| signal recognition particle protein [Neisseria meningitidis
           ES14902]
 gi|325145234|gb|EGC67514.1| signal recognition particle protein [Neisseria meningitidis
           M01-240013]
 gi|325199007|gb|ADY94463.1| signal recognition particle protein [Neisseria meningitidis G2136]
          Length = 456

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT  GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|109897991|ref|YP_661246.1| signal recognition particle protein [Pseudoalteromonas atlantica
           T6c]
 gi|109700272|gb|ABG40192.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Pseudoalteromonas atlantica T6c]
          Length = 458

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 159/312 (50%), Gaps = 31/312 (9%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + DI    RL DD +++ L ++   L+ +D+ + V +  +E++  +   
Sbjct: 2   FENLTERLGKTLKDISGRGRLTDDNIKDTLREVRMALLEADVALPVVKSFIEQVKERAVG 61

Query: 77  KDVS------------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            +VS            VQ  L  V    ++ L   ++P        P V+L+ G+ G GK
Sbjct: 62  TEVSKSLNPGQVFIKIVQAELESVMGQANEGLDLAAQP--------PAVVLMAGLQGAGK 113

Query: 125 TTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT +GKL++ ++D    KV++ + D +R AAI QL+  A     +   S I      +  
Sbjct: 114 TTSVGKLARYLTDREKKKVLVVSADVYRPAAIKQLETLAIEVGVECFPSTIEQKPIDIVN 173

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A   A+ K  DVL++DTAGRLH ++ +M  I  + + +K      P   L V+DA TGQ
Sbjct: 174 AAVDHAKKKFFDVLLVDTAGRLHIDAEMMGEIKDLHQAIK------PIETLFVVDAMTGQ 227

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A    + F+     TG+I+TK DG ARGG  + +      P+ FLG+GE I+ LEPF  
Sbjct: 228 DAANTAKAFNEALPLTGVILTKTDGDARGGAALSVRHITGKPIKFLGMGEKIDALEPFHP 287

Query: 304 KDFSAVITGCLD 315
           +  ++ I G  D
Sbjct: 288 ERVASRILGMGD 299


>gi|94676755|ref|YP_588656.1| signal recognition particle protein [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|94219905|gb|ABF14064.1| signal recognition particle protein [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 449

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 153/292 (52%), Gaps = 26/292 (8%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVS-- 89
           I+   + D +RE +   L+ +D+ + V Q+ +    E  L+++  K ++  +    +   
Sbjct: 22  ITEVNIKDTLRE-VRMALLEADVALPVIQEFISRVKESALSQKVNKSLTPGQEFIKIIRW 80

Query: 90  ELIHKM-----LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VM 143
           ELI+ M      + L+ P        P V+L+VG  GVGKTT + KL K + +   K ++
Sbjct: 81  ELINTMGGQNDTLNLAAP-------PPVVVLIVGQQGVGKTTSVVKLGKYLGERQRKKIL 133

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           + + D +R +AI+QL+      + DF  SEI      + + A   A+    DVL++DTAG
Sbjct: 134 VVSTDVYRPSAINQLETLTKNINIDFFPSEIVQKPLNIVHLALTYAKQHFYDVLLVDTAG 193

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RLH N+ +M  I  +   +K      P   + V+DA TGQ+A +  + F+++   TG+I+
Sbjct: 194 RLHTNNFMMNEIINIHIAIK------PVETIFVVDAMTGQDAAKVAKSFNSMLPLTGIIL 247

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TK+DGT+R G  + I      P+ FLGVGE I+ LEPF     +  I G  D
Sbjct: 248 TKVDGTSRCGAALSISYITGKPIKFLGVGEKIDALEPFYPDRLANRILGMGD 299


>gi|332307017|ref|YP_004434868.1| signal recognition particle protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174346|gb|AEE23600.1| signal recognition particle protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 458

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 161/312 (51%), Gaps = 31/312 (9%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + DI    RL DD +++ L ++   L+ +D+ + V +  +E++  +   
Sbjct: 2   FENLTERLGKTLKDISGRGRLTDDNIKDTLREVRMALLEADVALPVVKSFIEQVKVRAVG 61

Query: 77  KDVS------------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            +VS            VQ  L  V    ++ L   ++P        P V+L+ G+ G GK
Sbjct: 62  TEVSKSLNPGQVFIKIVQAELESVMGQANEGLDLAAQP--------PAVVLMAGLQGAGK 113

Query: 125 TTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT +GKL++ +++    KV++ + D +R AAI QL+  A     +   S I      +  
Sbjct: 114 TTSVGKLARYLTEREKKKVLVVSADIYRPAAIKQLETLATEIGVECFPSTIEQKPIDIVN 173

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+ K  DVL++DTAGRLH ++ +M  I  + + +K      P   L V+DA TGQ
Sbjct: 174 DAVEHAKKKFFDVLLVDTAGRLHIDAEMMGEIKDLHQAIK------PIETLFVVDAMTGQ 227

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A    + F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF  
Sbjct: 228 DAANTAKAFNEALPLTGVILTKTDGDARGGAALSVRHITGKPIKFLGMGEKVDALEPFHP 287

Query: 304 KDFSAVITGCLD 315
           +  ++ I G  D
Sbjct: 288 ERVASRILGMGD 299


>gi|261820438|ref|YP_003258544.1| signal recognition particle protein [Pectobacterium wasabiae
           WPP163]
 gi|261604451|gb|ACX86937.1| signal recognition particle protein [Pectobacterium wasabiae
           WPP163]
          Length = 453

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 114/209 (54%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A +  
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKQKKKVLVVSADVYRPAAIKQLETLAQQVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S+      A+   A + A+ K  DVL++DTAGRLH +  +M  I ++   +K   
Sbjct: 157 VDFFPSDAQEKPLAIVERALQHAKLKFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA TGQ+A    + F+     TG+I+TK+DG ARGG  + I      P+
Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVILTKIDGDARGGAALSIRHITGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLGVGE    LEPF     ++ I G  D
Sbjct: 271 KFLGVGEKTEALEPFYPDRVASRILGMGD 299


>gi|300361928|ref|ZP_07058105.1| signal recognition particle protein [Lactobacillus gasseri JV-V03]
 gi|300354547|gb|EFJ70418.1| signal recognition particle protein [Lactobacillus gasseri JV-V03]
          Length = 476

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 157/307 (51%), Gaps = 22/307 (7%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + S +L++ + ++     IS   ++D  RE +   L+ +D+   V +  ++++  +  
Sbjct: 3   FENLSERLQKALKNLTGKGKISEADINDASRE-IRLALLEADVNFKVVKDFIKKIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V + + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVDDELTKMMGEEAVSLNKS-QHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+   M +   + +L AGD +R AAIDQLK    + +   V SE   D A +     ++A
Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIDQLKQIGQQLNVP-VYSEDNQDVAEIVNHGLEEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQ 248
              K D ++IDTAGRL  +  LM         LKR+   A P + L V+DA TGQ A + 
Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLM-------NELKRVTAVAHPDNTLLVVDAMTGQAATQV 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F+     TG+I+TK+DG  RGG  + I     +P+ F G GE + DL  F     ++
Sbjct: 233 AEGFNNDLDLTGIILTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|295097178|emb|CBK86268.1| signal recognition particle subunit FFH/SRP54 (srp54) [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 453

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 116/212 (54%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A++  
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A K+A+ K  DVL++DTAGRLH +  +M  I ++        
Sbjct: 157 VDFFPSDVAQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE    LEPF     ++ I G  D
Sbjct: 268 KPIKFLGVGEKTEALEPFHPDRIASRILGMGD 299


>gi|325143074|gb|EGC65423.1| SRP54-type protein, GTPase domain protein [Neisseria meningitidis
           961-5945]
          Length = 303

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNKALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT  GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|260598989|ref|YP_003211560.1| signal recognition particle protein [Cronobacter turicensis z3032]
 gi|260218166|emb|CBA33004.1| Signal recognition particle protein [Cronobacter turicensis z3032]
          Length = 453

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 115/209 (55%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A +  
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A K+A+ K  DVL++DTAGRLH +  +M  I ++   +K   
Sbjct: 157 VDFFPSDVAQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I      P+
Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLGVGE    LEPF     ++ I G  D
Sbjct: 271 KFLGVGEKTEALEPFHPDRIASRILGMGD 299


>gi|134045071|ref|YP_001096557.1| signal recognition particle protein Srp54 [Methanococcus
           maripaludis C5]
 gi|166222335|sp|A4FVX4|SRP54_METM5 RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|132662696|gb|ABO34342.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanococcus maripaludis C5]
          Length = 450

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 150/278 (53%), Gaps = 22/278 (7%)

Query: 39  RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           ++L   V ++++  LI+SD+ V         + +K +EE   K  +K   + +++YD  E
Sbjct: 24  KKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYD--E 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L+ K+L   ++    D S +  VIL++G+ G GKTT   KL++ +   GL+  L A D +
Sbjct: 82  LV-KLLGETTQKLELDPSKK-SVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAA-LAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           R AA  QLK  +++ +      E  +     +  E  ++   KKVDV+IIDTAGR     
Sbjct: 140 RPAAYQQLKQLSEKINVPLFGDETRTKTPVDITKEGMEKL--KKVDVIIIDTAGRHKEEE 197

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDG 268
            L+A + +M       D   P+ ++ V+D T GQ A  Q + F  +V+    +++TK+DG
Sbjct: 198 SLLAEMKEM------KDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDG 251

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +A+GGG +  V     P+ F+G GEG+++LE F  K F
Sbjct: 252 SAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKF 289


>gi|301154660|emb|CBW14122.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Haemophilus parainfluenzae T3T1]
          Length = 463

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++      +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQKPVEIAKAALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +S +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDSEMMDEIKQVHATLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|116621691|ref|YP_823847.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224853|gb|ABJ83562.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 455

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/272 (33%), Positives = 144/272 (52%), Gaps = 14/272 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           +S+  ++  +RE +   L+ +D+   V ++++E +  K   ++V       Q+V+  V E
Sbjct: 22  LSAENMETALRE-IRMALLEADVNFKVVKQLIENIKQKAVGEEVLNALSPSQQVIKIVHE 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + K+L        +  +  P V ++VG+ G GKTT  GKL++ +S  G   M+ + D +
Sbjct: 81  ELIKILGSHESKLRY-ANDPPSVFMIVGLQGSGKTTSTGKLARWLSKNGHAPMVVSVDVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAA-LAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           R AA +QLK+ A            G  A   LA  A ++A     DVL++DTAGRLH + 
Sbjct: 140 RPAAREQLKVVARDVKQPIYEGAPGETAPLDLARSARREATNSGRDVLLVDTAGRLHIDD 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + ++   L       P  +L V DA TGQ+A++  + FH   G TG+I+TKMDG 
Sbjct: 200 DLMVELQQLKEQLN------PVEILFVADAMTGQDAVKSADEFHKRLGITGVILTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           ARGG  + I      P+ F+GVGE ++ LE F
Sbjct: 254 ARGGAALSIRSVTGQPLKFVGVGEKLDALEAF 285


>gi|332157931|ref|YP_004423210.1| signal recognition particle protein Srp54 [Pyrococcus sp. NA2]
 gi|331033394|gb|AEC51206.1| signal recognition particle protein Srp54 [Pyrococcus sp. NA2]
          Length = 443

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 140/279 (50%), Gaps = 16/279 (5%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVSELIHKML 96
           V+E + D+   LI++D+ V +   +  E+    L ++    +S  + ++  V E + K L
Sbjct: 28  VKEVVRDIQRALIQADVNVRLVLNLTREIQRRALEEKPPAGISRKEHIIKIVYEELTKFL 87

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              ++P   +   +P ++L+VGV G GKTT + KL++     G KV +   DT+R  A  
Sbjct: 88  GTEARPI--EIREKPTILLMVGVQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYH 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK   D    +        DA  LA E  K  + K VD++I+DTAGR      L+  + 
Sbjct: 146 QLKQLLDPYHIEVFGDPQEKDAIKLAREGVKHFKEKGVDLIIVDTAGRHKEEKNLIEEMR 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           ++   +       PH V+ V+D T GQ A  Q   F        +I+TK+D +A+GGG +
Sbjct: 206 QISEAIN------PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             V     P+ F+GVGE I+D+EPF    F + + G  D
Sbjct: 260 SAVAATGAPIKFIGVGEKIDDIEPFDPARFVSRLLGLGD 298


>gi|171676350|ref|XP_001903128.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936241|emb|CAP60900.1| unnamed protein product [Podospora anserina S mat+]
          Length = 516

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 151/302 (50%), Gaps = 24/302 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80
           ++   +TD+  +  LD    D + +++   L+ +D+ V +  ++ +++      KD+   
Sbjct: 9   RINAAVTDLTRAPNLDEKAFDSMLKQICSALLEADVNVRLVGRLRKDIKAAVNFKDLPPA 68

Query: 81  ------VQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
                 +Q+ ++D + +L+     P ++PF      + +VI+ VG+ G GKTT   KL++
Sbjct: 69  VNKKRLIQKAVFDHLVDLVD----PHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKLAR 123

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G +  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++
Sbjct: 124 HYQSRGFRACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVAKEGVDKFKKER 183

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            +V+I+DT+GR    S L   +  +   +K      P   + VLD++ GQ A  Q   F 
Sbjct: 184 FEVIIVDTSGRHRQESALFQEMMDIQNAIK------PDETIMVLDSSIGQQAEGQAMAFK 237

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             A    +I+TK DG A GGG I  V   + P+ F+G GE + DLE FV K+F + + G 
Sbjct: 238 EAADFGAIIITKTDGHAAGGGAISAVAATRTPIVFIGTGEHMLDLERFVPKNFISKLLGM 297

Query: 314 LD 315
            D
Sbjct: 298 GD 299


>gi|297569147|ref|YP_003690491.1| signal recognition particle protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925062|gb|ADH85872.1| signal recognition particle protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 455

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 156/304 (51%), Gaps = 22/304 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L++   ++     L ++ +RE + ++   L+ +D+   V +  +  +  K   
Sbjct: 2   FDSLSQRLQDVFKNLRGHGTLTEENIREAMREVRLALLEADVNFRVVKDFIASVTEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           ++V       Q+V+    +++H+ L+ L    + +      +P VI++VG+ G GKTT  
Sbjct: 62  REVLKSLAPGQQVI----KIVHQELVELLGGSSVELELGGRKPVVIMMVGLQGSGKTTTS 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++++   G K  L   D +R AAIDQL + A         S    D   +  +A  +
Sbjct: 118 GKLARRLQGEGKKPYLVPADVYRPAAIDQLTVLAGELEVPVHPSRTDQDPVDICRQAVAR 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A     D+L++DTAGRLH +  LM  + ++   L+      P  +L V DA TGQ+A+  
Sbjct: 178 AGELGCDILLVDTAGRLHVDQELMEELSRIKTALQ------PAEILLVADAMTGQDAVAV 231

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + FH     TG+++TK+DG ARGG  + I      P+ F+G+GEG++ LE F     ++
Sbjct: 232 ADKFHQDLSLTGVVLTKLDGDARGGAALSIKKATGRPIKFVGLGEGLDALEVFHPDRMAS 291

Query: 309 VITG 312
            I G
Sbjct: 292 RILG 295


>gi|50306973|ref|XP_453464.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642598|emb|CAH00560.1| KLLA0D09020p [Kluyveromyces lactis]
          Length = 530

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 150/307 (48%), Gaps = 28/307 (9%)

Query: 27  KLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEEL----------- 70
           ++   +T+ IS+ + D       + +E+   L+ +D+ + +  ++ E +           
Sbjct: 9   RINNAVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNTLLSNANVN 68

Query: 71  --LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              T    K + +Q+ ++D  EL + +   ++ PF      + +VI+ VG+ G GKTT  
Sbjct: 69  AKFTNAQTKKL-IQKTVFD--ELCNLVDCEVTSPFQPK-KRQSNVIMFVGLQGSGKTTSC 124

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+   S  G KV L   DTFR+ A DQLK  A +    F  S    +   +A +   +
Sbjct: 125 TKLAVYYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTEPNPVKVAKDGVDK 184

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +K +++I+DT+GR      L   + ++ + +K      P   + VLDA+ GQ A  Q
Sbjct: 185 FKKEKFEIIIVDTSGRHQQEDSLFQEMVEISQAVK------PKQTIMVLDASIGQAAEHQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F   A    +I+TKMDG ARGGG I  V +   P+ F+G GE I+D E F  K F +
Sbjct: 239 SKAFKESADFGSIILTKMDGHARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKSFVS 298

Query: 309 VITGCLD 315
            + G  D
Sbjct: 299 KLLGIGD 305


>gi|21227369|ref|NP_633291.1| signal recognition particle protein Srp54 [Methanosarcina mazei
           Go1]
 gi|23822172|sp|Q8PXF3|SRP54_METMA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|20905728|gb|AAM30963.1| signal recognition particle subunit FFH/SRP54 [Methanosarcina mazei
           Go1]
          Length = 443

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 153/301 (50%), Gaps = 30/301 (9%)

Query: 28  LKEGITDIISSRRLDD-GVREELEDL---LIRSDIGV----AVAQKIVEELLTKRYAKDV 79
           L+  +  +I + R+D+  V E ++D+   L+++D+ V     ++Q+I E  + +     +
Sbjct: 10  LQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEDPPAGM 69

Query: 80  S----VQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           +    V R++Y ++ E+I K           D   +P  I++VG+ G GKTT   KL++ 
Sbjct: 70  NPREHVIRIVYQELMEIIGK---------GADIQLKPQTIMMVGLQGSGKTTSAAKLARY 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               GLK  + A DTFR  A  QLK  +++ +  F   E   DA  +     K  +  K 
Sbjct: 121 FQRKGLKAGVVAADTFRPGAYHQLKTLSEKLNVGFYGEEGNPDAVEITIHGLKALE--KY 178

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D+ I+DTAGR    + L+  + ++  V K      P     VLDA  GQ A +Q   F+ 
Sbjct: 179 DIKIVDTAGRHALEADLIEEMERIHAVAK------PDHKFMVLDAGIGQQASQQAHAFND 232

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
             G TG+I+TK+DGTA+GGG +  V   K P+ F+GVGE   D E F A  F + + G  
Sbjct: 233 SVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMG 292

Query: 315 D 315
           D
Sbjct: 293 D 293


>gi|300114672|ref|YP_003761247.1| signal recognition particle protein [Nitrosococcus watsonii C-113]
 gi|299540609|gb|ADJ28926.1| signal recognition particle protein [Nitrosococcus watsonii C-113]
          Length = 452

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 116/207 (56%), Gaps = 9/207 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT + KL++ + +   K V++ + D +R AAI QL+  A      F
Sbjct: 100 PAVILMAGLQGSGKTTTVAKLARWLKEQQKKSVLVTSADVYRPAAIQQLETLASEVGVAF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+   D  A+A  A +QA+ + +DVLIIDTAGRLH + ++MA I       KRL   A
Sbjct: 160 YPSKPTQDPVAIARGAIQQARTQVLDVLIIDTAGRLHVDDLMMAEI-------KRLHEAA 212

Query: 230 -PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L V+D+ TGQ+A    + F+     TG+I+TK+DG ARGG  + I      P+ F
Sbjct: 213 EPVETLFVVDSMTGQDAANTAQAFNDSLALTGVILTKVDGDARGGAALSIRQITGKPIKF 272

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           LGVGE    LE F     ++ I G  D
Sbjct: 273 LGVGEKTAALELFHPDRLASRILGMGD 299


>gi|126654295|ref|ZP_01726072.1| signal recognition particle-like (SRP) component [Bacillus sp.
           B14905]
 gi|126589259|gb|EAZ83420.1| signal recognition particle-like (SRP) component [Bacillus sp.
           B14905]
          Length = 438

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 134/237 (56%), Gaps = 12/237 (5%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GL 140
           Q+V+  V + + +++     P  ++ +  P VI++VG+ G GKTT  GKL+  +      
Sbjct: 73  QQVIKIVQDELTELMGGEQSPIKFN-TKPPTVIMMVGLQGAGKTTTSGKLANVLRKKYNR 131

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLI 198
           K +L A D +R AA+ QL+    + S       +G+D +   +A +A ++A+ +  DV+I
Sbjct: 132 KPLLVAADVYRPAAVQQLETLGKQLSLPVFS--LGTDISPVEIARQAIEKAKEEHHDVVI 189

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDTAGRLH +  LM  + K IR LK      P  V  V+DA TGQ+A+   E F+   G 
Sbjct: 190 IDTAGRLHIDEDLMQEL-KDIRALKE-----PDEVFLVVDAMTGQDAVNVAESFNEAIGI 243

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG+++TK+DG  RGG  + I    + P+ F+G+GE ++ LEPF  +  ++ I G  D
Sbjct: 244 TGVVLTKLDGDTRGGAALSIRSVTQKPIKFVGMGEKMDALEPFHPERMASRILGMGD 300


>gi|73668456|ref|YP_304471.1| signal recognition particle protein Srp54 [Methanosarcina barkeri
           str. Fusaro]
 gi|121731303|sp|Q46E01|SRP54_METBF RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|72395618|gb|AAZ69891.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanosarcina barkeri str. Fusaro]
          Length = 443

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 153/301 (50%), Gaps = 30/301 (9%)

Query: 28  LKEGITDIISSRRLDD-GVREELEDL---LIRSDIGV----AVAQKIVEELLTKRYAKDV 79
           L+  +  +I + R+D+  V E ++D+   L+++D+ V     ++Q+I E  + +     +
Sbjct: 10  LQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEAPPAGM 69

Query: 80  S----VQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           +    V R++Y ++ E+I K           +   +P +I++VG+ G GKTT   KL++ 
Sbjct: 70  NPREHVIRIVYQELMEIIGK---------GAEIQLKPQIIMMVGLQGSGKTTSTAKLARY 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               GLK  + A DTFR  A  QLK   ++ +  F   E   DA  +     K  +  K 
Sbjct: 121 FQRKGLKAGVVAADTFRPGAYHQLKTLCEKLNVAFYGEENNPDAVEITRNGLKALE--KY 178

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV I+DTAGR    + L+  + ++  V K      P     VLDA  GQ A +Q   F+ 
Sbjct: 179 DVKIVDTAGRHALEADLIEEMEQINAVAK------PDHKFMVLDAGIGQQASQQAHAFND 232

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
             G TG+I+TK+DGTA+GGG +  V   K P+ F+GVGE   D E F A  F + + G  
Sbjct: 233 SVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMG 292

Query: 315 D 315
           D
Sbjct: 293 D 293


>gi|260550989|ref|ZP_05825194.1| signal recognition particle protein [Acinetobacter sp. RUH2624]
 gi|260405937|gb|EEW99424.1| signal recognition particle protein [Acinetobacter sp. RUH2624]
          Length = 469

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 158/295 (53%), Gaps = 25/295 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ--------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127
           ++V  Q        +++YD    + KM+   ++    D S +P V+ L+ G+ G GKTT 
Sbjct: 62  QEVMTQLSPGQAFVKIVYDE---LTKMMGEANE--TLDLSAKPPVVVLLAGLQGAGKTTT 116

Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL++ + +    KVM  + D +R AAI QL+  +    A F+ S+       +   A 
Sbjct: 117 AAKLARFLKERQKKKVMTVSADVYRPAAIKQLETVSTEVGAGFIPSDPSEKPIDIVNRAI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+ +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A 
Sbjct: 177 EQAKIQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PIETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
              + F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF
Sbjct: 231 NTAKAFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPF 285


>gi|145297735|ref|YP_001140576.1| signal recognition particle protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850507|gb|ABO88828.1| signal recognition particle protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 459

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 158/307 (51%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72
           F + + +L   + ++    RL ++ +++ L ++   L+ +D+ + V +  V    E  + 
Sbjct: 2   FENLTERLSRTLRNVSGRGRLTEENIKDTLREVRMALLEADVALPVVRDFVARVKERAVG 61

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIG 129
           +  AK +S  +      +++H  L+ +    N   +     P +IL+ G+ G GKTT +G
Sbjct: 62  QEVAKSLSPGQAFI---KIVHGELVSVMGEANEQLNLAAQPPVIILMAGLQGAGKTTTVG 118

Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + + +  KV++ + D +R AAI QL+  A     DF  S+       +A  A  Q
Sbjct: 119 KLAKLLKERSKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSDASQKPVDIATAAIDQ 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+I+DTAGRLH +S +M  I  +   +K      P   L V+DA TGQ+A   
Sbjct: 179 ARKKFYDVVIVDTAGRLHVDSDMMDEIIHLHATIK------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+I+TK DG ARGG  + +      PV F+G+GE  + LEPF     ++
Sbjct: 233 AKAFNEALPLTGVILTKADGDARGGAALSVRHITGKPVKFIGMGEKTDALEPFHPDRLAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|239826589|ref|YP_002949213.1| signal recognition particle protein [Geobacillus sp. WCH70]
 gi|239806882|gb|ACS23947.1| signal recognition particle protein [Geobacillus sp. WCH70]
          Length = 446

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 114/209 (54%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S  P VI++VG+ G GKTT  GKL+  +      K +LAA D +R AAI QL+    + +
Sbjct: 98  SRPPTVIMMVGLQGAGKTTTTGKLANLLRKRYNRKPLLAAADIYRPAAIKQLETLGKQLN 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +A +A ++A+ +  D ++IDTAGRLH +  LM  + +M  V K   
Sbjct: 158 MPVFSLGDQVSPVEIAKQAIEKAKEEHYDYVLIDTAGRLHIDETLMDELKQMKEVAK--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  +  V+DA TGQ+A+   + FH   G TG+I+TK+DG  RGG  + I      P+
Sbjct: 215 ---PDEIFLVVDAMTGQDAVNVAQSFHEQLGITGVILTKLDGDTRGGAALSIRAVTNTPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LEPF  +  ++ I G  D
Sbjct: 272 KFVGMGEKLDALEPFHPERMASRILGMGD 300


>gi|229549880|ref|ZP_04438605.1| signal recognition particle protein [Enterococcus faecalis ATCC
           29200]
 gi|255972664|ref|ZP_05423250.1| signal recognition particle protein [Enterococcus faecalis T1]
 gi|256959109|ref|ZP_05563280.1| signal recognition particle protein [Enterococcus faecalis DS5]
 gi|257079141|ref|ZP_05573502.1| signal recognition particle protein [Enterococcus faecalis JH1]
 gi|294781588|ref|ZP_06746924.1| signal recognition particle protein [Enterococcus faecalis PC1.1]
 gi|307269511|ref|ZP_07550850.1| signal recognition particle protein [Enterococcus faecalis TX4248]
 gi|312951630|ref|ZP_07770525.1| signal recognition particle protein [Enterococcus faecalis TX0102]
 gi|229304953|gb|EEN70949.1| signal recognition particle protein [Enterococcus faecalis ATCC
           29200]
 gi|255963682|gb|EET96158.1| signal recognition particle protein [Enterococcus faecalis T1]
 gi|256949605|gb|EEU66237.1| signal recognition particle protein [Enterococcus faecalis DS5]
 gi|256987171|gb|EEU74473.1| signal recognition particle protein [Enterococcus faecalis JH1]
 gi|294451284|gb|EFG19750.1| signal recognition particle protein [Enterococcus faecalis PC1.1]
 gi|306514131|gb|EFM82707.1| signal recognition particle protein [Enterococcus faecalis TX4248]
 gi|310630347|gb|EFQ13630.1| signal recognition particle protein [Enterococcus faecalis TX0102]
 gi|315037112|gb|EFT49044.1| signal recognition particle protein [Enterococcus faecalis TX0027]
 gi|315158208|gb|EFU02225.1| signal recognition particle protein [Enterococcus faecalis TX0312]
 gi|315168902|gb|EFU12919.1| signal recognition particle protein [Enterococcus faecalis TX1341]
 gi|323480859|gb|ADX80298.1| signal recognition particle protein [Enterococcus faecalis 62]
 gi|329571907|gb|EGG53585.1| signal recognition particle protein [Enterococcus faecalis TX1467]
          Length = 472

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 23/309 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +  V+E + ++   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129
             +V       Q+++  V E + K L   S+    + S + P VI++ G+ G GKTT  G
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLG--SETVELNKSPKIPTVIMMTGLQGAGKTTFTG 119

Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAF 186
           KL+K  M     + +L AGD +R AAIDQLK+   +   +    ++G+DA    +  +  
Sbjct: 120 KLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGL 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+ KK D ++IDTAGRLH +  LM  + K I+ L       P+ +L V+DA TGQ+A+
Sbjct: 178 ALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKELTN-----PNEILLVVDAMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     
Sbjct: 232 NVADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRM 291

Query: 307 SAVITGCLD 315
           S+ I G  D
Sbjct: 292 SSRILGMGD 300


>gi|88604250|ref|YP_504428.1| signal recognition particle-docking protein FtsY [Methanospirillum
           hungatei JF-1]
 gi|88189712|gb|ABD42709.1| signal recognition particle-docking protein FtsY [Methanospirillum
           hungatei JF-1]
          Length = 353

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 148/273 (54%), Gaps = 13/273 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELLTKRYAKDVSVQRVLYD-VS 89
           IIS + ++D + +ELE  L+ SD+  +V +    +I  +L   +     SV  ++ + +S
Sbjct: 75  IISEKDVND-ILDELEMGLLESDVAFSVTEAILARIKADLSGSKRKIGTSVDSIVRNALS 133

Query: 90  ELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + +  +L        +   H RP  IL  GVNG GKTT I K+++ +   G  V+L AGD
Sbjct: 134 DALLGVLGEGVDICAFIREHERPVKILFTGVNGTGKTTSIAKVTRFLQKNGFSVVLGAGD 193

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+ AI+Q+ +  +R     +  + GSD  A+ ++  + A+A K+DV++ DTAGR HN 
Sbjct: 194 TFRAGAIEQIDVHGERLGVKVIQHQEGSDPTAVLFDTVEYARAHKIDVVLGDTAGRFHNR 253

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           + LM  + K+ RV+       P  ++ V +A  G +A+ + E F    G   +++TK+D 
Sbjct: 254 ANLMNQLAKIRRVIN------PDLIVYVDEAVAGNDAVIRAEEFAKSVGMDAIMLTKVDM 307

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             +GG  I +      P+ F+G G+G +D+  F
Sbjct: 308 DPKGGAAISVAYAVGKPLLFIGTGQGYDDVMAF 340


>gi|148825617|ref|YP_001290370.1| Signal recognition particle protein [Haemophilus influenzae PittEE]
 gi|229847076|ref|ZP_04467182.1| Signal recognition particle protein [Haemophilus influenzae 7P49H1]
 gi|148715777|gb|ABQ97987.1| Signal recognition particle protein [Haemophilus influenzae PittEE]
 gi|229810160|gb|EEP45880.1| Signal recognition particle protein [Haemophilus influenzae 7P49H1]
 gi|309972762|gb|ADO95963.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Haemophilus
           influenzae R2846]
          Length = 459

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKAALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|312903448|ref|ZP_07762628.1| signal recognition particle protein [Enterococcus faecalis TX0635]
 gi|310633324|gb|EFQ16607.1| signal recognition particle protein [Enterococcus faecalis TX0635]
          Length = 472

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 23/309 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +  V+E + ++   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129
             +V       Q+++  V E + K L   S+    + S + P VI++ G+ G GKTT  G
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLG--SETVELNKSPKIPTVIMMTGLQGAGKTTFTG 119

Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAF 186
           KL+K  M     + +L AGD +R AAIDQLK+   +   +    ++G+DA    +  +  
Sbjct: 120 KLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGL 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+ KK D ++IDTAGRLH +  LM  + K I+ L       P+ +L V+DA TGQ+A+
Sbjct: 178 ALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKELAN-----PNEILLVVDAMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     
Sbjct: 232 NVADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRM 291

Query: 307 SAVITGCLD 315
           S+ I G  D
Sbjct: 292 SSRILGMGD 300


>gi|315126107|ref|YP_004068110.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Pseudoalteromonas sp.
           SM9913]
 gi|315014621|gb|ADT67959.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Pseudoalteromonas sp.
           SM9913]
          Length = 459

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 159/307 (51%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L + + +I    RL +D +++ L ++    + +D+ + V ++ V+++  K  A
Sbjct: 2   FENLQERLGKTLKNISGRGRLTEDNIKDTLREVRMAFLEADVALPVVREFVKQV--KERA 59

Query: 77  KDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L         V E + K +   ++  + + +  P V+++ G+ G GKTT +G
Sbjct: 60  VGVEVTKSLSPGQVFIKIVREELEKAMGEANEELSLN-AQPPAVVMMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + +   K V++ + D +R AAI QL+  A   + +F  S+I      +A  A   
Sbjct: 119 KLAKFLKERKKKSVLVVSADVYRPAAIKQLETLATEVNVEFFPSDISQKPVDIATAAISH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K +DV+++DTAGRLH +S +M  I  +   +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFIDVVLVDTAGRLHVDSDMMDEIKALHHAIN------PIETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK DG ARGG  + I      P+ F+GVGE  + LEPF     ++
Sbjct: 233 AKAFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|304399182|ref|ZP_07381049.1| signal recognition particle protein [Pantoea sp. aB]
 gi|304353236|gb|EFM17616.1| signal recognition particle protein [Pantoea sp. aB]
          Length = 453

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 159/306 (51%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL ++ ++E L ++   L+ +D+ + V +  +  +      
Sbjct: 2   FDNLTDRLSQTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVG 61

Query: 77  KDVSVQRVLYDVSELI----HKMLMPLSKPFN-WDFSHRPH-VILVVGVNGVGKTTVIGK 130
            DV+  + L    E I    ++++  +    N  D + +P  V+L+ G+ G GKTT + K
Sbjct: 62  HDVN--KSLTPGQEFIKIVRNELVAAMGAENNALDLAAQPPAVVLMAGLQGAGKTTSVAK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A +   DF  S++      +   A ++A
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSDLSQKPVDIVNNALREA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    
Sbjct: 180 RLKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG ARGG  + I      P+ F+GVGE    LEPF  +  ++ 
Sbjct: 234 KAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPERIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|81300580|ref|YP_400788.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Synechococcus elongatus PCC 7942]
 gi|2126515|pir||S68160 probable RNA binding protein ffh - Synechococcus sp. (strain PCC
           7942)
 gi|81169461|gb|ABB57801.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Synechococcus elongatus PCC 7942]
          Length = 496

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 151/295 (51%), Gaps = 29/295 (9%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA--------KDVSVQRVL 85
           D IS   + + ++E +   L+ +D+ + V ++ + ++  K            D    +V+
Sbjct: 31  DKISESNVQEALKE-VRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKVV 89

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL++      +  P VIL+ G+ G GKTT   KL+  +   G   
Sbjct: 90  YD--ELVQVMGETHVPLAQA-----AKAPTVILMAGLQGAGKTTATAKLALHLRKEGRST 142

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200
           +L A D +R AAIDQL     +   D    E+GSDA    +A +  ++A+ + +D +I+D
Sbjct: 143 LLVATDVYRPAAIDQLITLGKQI--DVPVFELGSDANPVEIARQGVEKARQEGIDTVIVD 200

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  ++ +M  + ++   +      APH VL V+D+  GQ A      FH   G TG
Sbjct: 201 TAGRLQIDTEMMEELAQVKEAI------APHEVLLVVDSMIGQEAASLTRSFHERIGITG 254

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I+TK+DG +RGG  + I      P+ F+G+GE +  L+PF  +  ++ I G  D
Sbjct: 255 AILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGD 309


>gi|229545688|ref|ZP_04434413.1| signal recognition particle protein [Enterococcus faecalis TX1322]
 gi|255975716|ref|ZP_05426302.1| signal recognition particle protein [Enterococcus faecalis T2]
 gi|256619193|ref|ZP_05476039.1| signal recognition particle protein [Enterococcus faecalis ATCC
           4200]
 gi|256853255|ref|ZP_05558625.1| signal recognition particle protein [Enterococcus faecalis T8]
 gi|257082423|ref|ZP_05576784.1| signal recognition particle protein [Enterococcus faecalis E1Sol]
 gi|257085055|ref|ZP_05579416.1| signal recognition particle protein [Enterococcus faecalis Fly1]
 gi|257090014|ref|ZP_05584375.1| signal recognition particle protein [Enterococcus faecalis CH188]
 gi|257416220|ref|ZP_05593214.1| signal recognition particle protein [Enterococcus faecalis AR01/DG]
 gi|257422483|ref|ZP_05599473.1| signal recognition particle protein [Enterococcus faecalis X98]
 gi|300860172|ref|ZP_07106259.1| signal recognition particle protein [Enterococcus faecalis TUSoD
           Ef11]
 gi|307275840|ref|ZP_07556979.1| signal recognition particle protein [Enterococcus faecalis TX2134]
 gi|307289238|ref|ZP_07569194.1| signal recognition particle protein [Enterococcus faecalis TX0109]
 gi|307291863|ref|ZP_07571734.1| signal recognition particle protein [Enterococcus faecalis TX0411]
 gi|312901896|ref|ZP_07761161.1| signal recognition particle protein [Enterococcus faecalis TX0470]
 gi|229309138|gb|EEN75125.1| signal recognition particle protein [Enterococcus faecalis TX1322]
 gi|255968588|gb|EET99210.1| signal recognition particle protein [Enterococcus faecalis T2]
 gi|256598720|gb|EEU17896.1| signal recognition particle protein [Enterococcus faecalis ATCC
           4200]
 gi|256711714|gb|EEU26752.1| signal recognition particle protein [Enterococcus faecalis T8]
 gi|256990453|gb|EEU77755.1| signal recognition particle protein [Enterococcus faecalis E1Sol]
 gi|256993085|gb|EEU80387.1| signal recognition particle protein [Enterococcus faecalis Fly1]
 gi|256998826|gb|EEU85346.1| signal recognition particle protein [Enterococcus faecalis CH188]
 gi|257158048|gb|EEU88008.1| signal recognition particle protein [Enterococcus faecalis ARO1/DG]
 gi|257164307|gb|EEU94267.1| signal recognition particle protein [Enterococcus faecalis X98]
 gi|295113085|emb|CBL31722.1| signal recognition particle subunit FFH/SRP54 (srp54) [Enterococcus
           sp. 7L76]
 gi|300849211|gb|EFK76961.1| signal recognition particle protein [Enterococcus faecalis TUSoD
           Ef11]
 gi|306497129|gb|EFM66675.1| signal recognition particle protein [Enterococcus faecalis TX0411]
 gi|306499947|gb|EFM69308.1| signal recognition particle protein [Enterococcus faecalis TX0109]
 gi|306507532|gb|EFM76663.1| signal recognition particle protein [Enterococcus faecalis TX2134]
 gi|311291089|gb|EFQ69645.1| signal recognition particle protein [Enterococcus faecalis TX0470]
 gi|315029568|gb|EFT41500.1| signal recognition particle protein [Enterococcus faecalis TX4000]
 gi|315032040|gb|EFT43972.1| signal recognition particle protein [Enterococcus faecalis TX0017]
 gi|315147394|gb|EFT91410.1| signal recognition particle protein [Enterococcus faecalis TX4244]
 gi|315150780|gb|EFT94796.1| signal recognition particle protein [Enterococcus faecalis TX0012]
 gi|315156150|gb|EFU00167.1| signal recognition particle protein [Enterococcus faecalis TX0043]
 gi|315163852|gb|EFU07869.1| signal recognition particle protein [Enterococcus faecalis TX1302]
 gi|315169591|gb|EFU13608.1| signal recognition particle protein [Enterococcus faecalis TX1342]
 gi|315172461|gb|EFU16478.1| signal recognition particle protein [Enterococcus faecalis TX1346]
 gi|315577856|gb|EFU90047.1| signal recognition particle protein [Enterococcus faecalis TX0630]
          Length = 472

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 23/309 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +  V+E + ++   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129
             +V       Q+++  V E + K L   S+    + S + P VI++ G+ G GKTT  G
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLG--SETVELNKSPKIPTVIMMTGLQGAGKTTFTG 119

Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAF 186
           KL+K  M     + +L AGD +R AAIDQLK+   +   +    ++G+DA    +  +  
Sbjct: 120 KLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGL 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+ KK D ++IDTAGRLH +  LM  + K I+ L       P+ +L V+DA TGQ+A+
Sbjct: 178 ALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKELAN-----PNEILLVVDAMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     
Sbjct: 232 NVADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRM 291

Query: 307 SAVITGCLD 315
           S+ I G  D
Sbjct: 292 SSRILGMGD 300


>gi|2500884|sp|Q55311|SRP54_SYNE7 RecName: Full=Signal sequence-binding protein
 gi|1279743|emb|CAA63054.1| signal sequence binding protein [Synechococcus elongatus PCC 7942]
          Length = 485

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 151/295 (51%), Gaps = 29/295 (9%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA--------KDVSVQRVL 85
           D IS   + + ++E +   L+ +D+ + V ++ + ++  K            D    +V+
Sbjct: 20  DKISESNVQEALKE-VRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKVV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL++      +  P VIL+ G+ G GKTT   KL+  +   G   
Sbjct: 79  YD--ELVQVMGETHVPLAQA-----AKAPTVILMAGLQGAGKTTATAKLALHLRKEGRST 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200
           +L A D +R AAIDQL     +   D    E+GSDA    +A +  ++A+ + +D +I+D
Sbjct: 132 LLVATDVYRPAAIDQLITLGKQI--DVPVFELGSDANPVEIARQGVEKARQEGIDTVIVD 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  ++ +M  + ++   +      APH VL V+D+  GQ A      FH   G TG
Sbjct: 190 TAGRLQIDTEMMEELAQVKEAI------APHEVLLVVDSMIGQEAASLTRSFHERIGITG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I+TK+DG +RGG  + I      P+ F+G+GE +  L+PF  +  ++ I G  D
Sbjct: 244 AILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGD 298


>gi|325267254|ref|ZP_08133917.1| signal recognition particle protein [Kingella denitrificans ATCC
           33394]
 gi|324981315|gb|EGC16964.1| signal recognition particle protein [Kingella denitrificans ATCC
           33394]
          Length = 455

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 155/292 (53%), Gaps = 23/292 (7%)

Query: 37  SSRRLDDGVREELEDL---LIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD-V 88
           +++  +D ++E L ++   L+ +D+ + + +  V    E  L + +A  ++  +  +  V
Sbjct: 19  NAKLTEDNIKEALREVRLALLEADVSLPIVKDFVNRVKERALGQEFADHLTPDQAFFGIV 78

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK--VMLAA 146
           +E + +++   +   N   S  P ++L+ G+ G GKTT +GKLSK + D   K  ++L +
Sbjct: 79  NEELTELMGSENSTLNLA-SAPPAIVLMAGLQGAGKTTTVGKLSKLLKDQDKKKKILLVS 137

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AAI+QL++ A++ + DF  S+       +A  A   A+    DVL++DTAGRL 
Sbjct: 138 ADVYRPAAIEQLRLLAEQVNVDFFPSDTSQKPVEIALAAQDYAKKHFYDVLMVDTAGRLA 197

Query: 207 NNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
            +  +M  I  +         HA   P   L V+DA  GQ+A+   + F+     TG+I+
Sbjct: 198 IDEEMMNEIKAI---------HAAVHPVETLFVVDAMLGQDAVNTAQAFNEALPLTGVIL 248

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TKMDG +RGG  + +      P+ F+G+GE IN LEPF     ++ I G  D
Sbjct: 249 TKMDGDSRGGAALSVRQVTGKPIKFMGIGEKINGLEPFYPDRIASRILGMGD 300


>gi|83592520|ref|YP_426272.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575434|gb|ABC21985.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Rhodospirillum rubrum ATCC 11170]
          Length = 504

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 153/289 (52%), Gaps = 23/289 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLM--- 97
           D    E+   L+ +D+ +AV ++ V ++  +   ++V ++ V     V +L+H  L+   
Sbjct: 28  DAAMREVRVALLEADVALAVVKQFVAQVKEQAIGQEV-IRSVTPGQMVVKLVHDALVDML 86

Query: 98  ---------PLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146
                    P       D +H P V IL+VG+ G GKTT   K++ +++    K V++A+
Sbjct: 87  SGEGGVEAEPDPMSLGIDIAHTPPVPILMVGLQGSGKTTTSAKIALRITKRERKKVLMAS 146

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AA  QL I  ++T  D +   +G     +A  A + A+    DV+I+DTAGRLH
Sbjct: 147 LDVYRPAAQRQLAILGEQTGVDTLEVVMGQKPVEIARRAMQAARVGGYDVVILDTAGRLH 206

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            + +LM  + + +R L       PH VL V DA TGQ+A+   + F+   G TG+++T++
Sbjct: 207 IDEVLMTEVAE-VRALVN-----PHEVLLVTDAMTGQDAVNVAQEFNEKVGVTGIVLTRV 260

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG +RGG  + +     +P+  +G+GE ++ LE F A+  +  I G  D
Sbjct: 261 DGDSRGGAALSMRAVTGVPIKLMGMGEKMDALEAFHAQRIAGRILGMGD 309


>gi|145637665|ref|ZP_01793319.1| Signal recognition particle protein [Haemophilus influenzae PittHH]
 gi|145269125|gb|EDK09074.1| Signal recognition particle protein [Haemophilus influenzae PittHH]
          Length = 462

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKAALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|330446979|ref|ZP_08310630.1| signal recognition particle protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491170|dbj|GAA05127.1| signal recognition particle protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 455

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 153/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL DD +++ L ++   L+ +D+ + V ++ V+ +  K  A
Sbjct: 2   FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130
               V + L    E I  +   L      +    D S   P VIL+ G+ G GKTT +GK
Sbjct: 60  VGTEVSKSLTPGQEFIKIVQAELELVMGEENEGLDLSCQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A     DF  S +      +A  A +  
Sbjct: 120 LGKLLKERDSKKVLVVSADVYRPAAIKQLETLAGDIGIDFFPSNVEQKPVEIAKAALEHG 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DV+I+DTAGRLH +  +M  I  + + L       P   L V+DA TGQ+A    
Sbjct: 180 KLKFYDVVIVDTAGRLHVDEEMMDEIKDVHQTLN------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPNRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|325577819|ref|ZP_08148094.1| signal recognition particle protein [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160564|gb|EGC72690.1| signal recognition particle protein [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 463

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTNVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++      +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQKPVEIAKAALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +S +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDSEMMDEIKQVHATLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|296104280|ref|YP_003614426.1| signal recognition particle protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058739|gb|ADF63477.1| signal recognition particle protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 453

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 154/309 (49%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D ++E L ++   L+ +D+ + V +  +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINRVKEKAVG 61

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVILVVGVNGVGKTTVIGK 130
            +V+  + L    E +  +   L      +       +  P V+L+ G+ G GKTT +GK
Sbjct: 62  HEVN--KSLTPGQEFVKIVRNELVSAMGEENQVLNLAAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A +   DF  S++      +   A K+A
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFFPSDVAQKPVDIVNAALKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A 
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HASINPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     
Sbjct: 231 NTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRI 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|1147795|gb|AAC49735.1| Srp54p [Yarrowia lipolytica]
          Length = 536

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 142/285 (49%), Gaps = 23/285 (8%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA------KDVSVQRVLYDVSELIHKML 96
           D + +E+   L+ SD+ + +  ++ +++     A      K   +Q+ L+D  EL++ + 
Sbjct: 28  DAMLKEVCSALLESDVNIKLVSQLRQKVKNSVKATPNGASKKKVIQKALFD--ELVNLVG 85

Query: 97  MPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           +  S      F     + +V++ VG+ G GKTT   KL+      G KV L   DTFR+ 
Sbjct: 86  VDESAASAAKFKPQKGKSNVVMFVGLQGSGKTTSCTKLAVYYQRRGFKVGLVCADTFRAG 145

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL-- 211
           A DQLK  A +    F  S   +D  A+A E   + + +K +++I+DT+GR    S L  
Sbjct: 146 AFDQLKQNATKAKIPFFGSYTETDPVAVAAEGVAKFKKEKFEIIIVDTSGRHRQESELFT 205

Query: 212 -MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
            M  IG  ++         P S + VLDA+ GQ A  Q   F   +    +I+TKMDG A
Sbjct: 206 EMVDIGAAVK---------PDSTIMVLDASIGQAAEPQSRAFKDASDFGSIILTKMDGHA 256

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GGG I  V     P+ F+G GE I+DLE F  K F + + G  D
Sbjct: 257 KGGGAISAVAATNTPIIFIGTGEHIHDLEAFSPKQFISKLLGIGD 301


>gi|326435414|gb|EGD80984.1| signal recognition particle protein [Salpingoeca sp. ATCC 50818]
          Length = 523

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 154/301 (51%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLDDGVREEL-EDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--- 79
           K+K  + ++ S+  +D+ V +EL +D+   LI SD+ V +  K+   +       D    
Sbjct: 9   KIKGALWNMTSATVIDEEVFDELVKDICRALIESDVQVGLVSKLRNNIKAAVQFDDSGAG 68

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                 +QR ++  +EL  K++ P   P+     ++P+VI+ VG+ G GKTT   KL+  
Sbjct: 69  VNRRRQIQRAVF--TELC-KLVDPGVTPWKPK-KNQPNVIMFVGLQGSGKTTTCTKLAYH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    F  S    D   +A +  ++ + +  
Sbjct: 125 YQRRGWKACLVCADTFRAGAFDQLKQNATKARIPFYGSYTEIDPVVIAADGVEKFKQQGF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +++I+DT+GR      L     +M++V   +DP    +++ V+DAT GQ    Q + F  
Sbjct: 185 EIIIVDTSGRHKQEDSLFE---EMLQVSNAVDPD---NIIFVMDATIGQACQGQAQAFKD 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
                 +I+TK+DG A+GGG +  V   K P+ ++G GE I+DLEPF  K F + + G  
Sbjct: 239 KVDVGAVIVTKLDGHAKGGGALSAVAATKSPIVYIGTGEHIDDLEPFQTKSFVSKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|320034158|gb|EFW16103.1| signal recognition particle protein SRP54 [Coccidioides posadasii
           str. Silveira]
          Length = 530

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 148/301 (49%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   ++D+  S  LD    D + +E+   L+ +D+ V + Q + + +        +   
Sbjct: 9   RINAAVSDLTRSNDLDEKVFDSMLKEICAALLSADVNVRLVQNLRKSIKSSVNFSSIPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P S+PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--QLV-ALVDPHSEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D A +A +   + + +K 
Sbjct: 125 YQTRGFKSALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAADGVAKFKKEKF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +V+I+DT+GR      L A + ++   +K      P   + VLD++ GQ A  Q   F A
Sbjct: 185 EVIIVDTSGRHKQEEDLFAEMTQIQNAVK------PDQTILVLDSSIGQAAEAQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|307277934|ref|ZP_07559018.1| signal recognition particle protein [Enterococcus faecalis TX0860]
 gi|306505331|gb|EFM74517.1| signal recognition particle protein [Enterococcus faecalis TX0860]
          Length = 472

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 23/309 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +  V+E + ++   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKPVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129
             +V       Q+++  V E + K L   S+    + S + P VI++ G+ G GKTT  G
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLG--SETVELNKSPKIPTVIMMTGLQGAGKTTFTG 119

Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAF 186
           KL+K  M     + +L AGD +R AAIDQLK+   +   +    ++G+DA    +  +  
Sbjct: 120 KLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGL 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+ KK D ++IDTAGRLH +  LM  + K I+ L       P+ +L V+DA TGQ+A+
Sbjct: 178 ALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKELAN-----PNEILLVVDAMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     
Sbjct: 232 NVADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRM 291

Query: 307 SAVITGCLD 315
           S+ I G  D
Sbjct: 292 SSRILGMGD 300


>gi|291000150|ref|XP_002682642.1| predicted protein [Naegleria gruberi]
 gi|284096270|gb|EFC49898.1| predicted protein [Naegleria gruberi]
          Length = 319

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 29/226 (12%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSA 167
           RP V+ + GVNG GKTT IGKL  K  ++G    +++AA DT R+AA DQL+ W +RTS 
Sbjct: 72  RPTVVQICGVNGSGKTTTIGKLLHKYRESGTVRNIVVAAADTVRAAAPDQLRTWVERTSG 131

Query: 168 ----DFVCSE----------------------IGSDAAALAYEAFKQAQAKK-VDVLIID 200
               D   SE                          A ++ YEA +QA  K+ VD++ +D
Sbjct: 132 CTLVDLTESEKLKKQHTTTPQQVKVKNIRQVSYKVPAESVVYEAIQQALRKEDVDLVFVD 191

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL N    M  +  +  +  +    AP     +LD T GQN+++Q ++F      +G
Sbjct: 192 TAGRLQNQEASMKELSLITEMCSKSRKGAPDHTWLILDGTIGQNSIQQAKLFQKYVRISG 251

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +I+TK+DG+A+GG ++ I    KIPV ++G+GE ++DL+PF  + F
Sbjct: 252 IIVTKLDGSAKGGVILAIANELKIPVLYIGLGESVSDLKPFYPEQF 297


>gi|261378491|ref|ZP_05983064.1| signal recognition particle protein [Neisseria cinerea ATCC 14685]
 gi|269145034|gb|EEZ71452.1| signal recognition particle protein [Neisseria cinerea ATCC 14685]
          Length = 456

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 151/286 (52%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  +   ++V       Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNTVKEQALGQEVVGSLTPDQAFIGVVNQALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   S  P ++L+ G+ G GKTT +GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVSP-PAIVLMAGLQGAGKTTTVGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+     F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTARAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|261391829|emb|CAX49286.1| signal recognition particle protein (fifty-four homolog) [Neisseria
           meningitidis 8013]
          Length = 456

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 151/286 (52%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V       Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVVGSLTPDQAFIGVVNKALT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT  GKL++ + +D   KV++ + D +R 
Sbjct: 84  ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 299


>gi|119470049|ref|ZP_01612854.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Alteromonadales
           bacterium TW-7]
 gi|119446759|gb|EAW28032.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Alteromonadales
           bacterium TW-7]
          Length = 459

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 157/307 (51%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L + + +I    RL +D +++ L ++    + +D+ + V +  V+++  K  A
Sbjct: 2   FENLQERLGKTLKNISGRGRLTEDNIKDTLREVRMAFLEADVALPVVRDFVKQV--KERA 59

Query: 77  KDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L         V E + K +   ++  + + +  P V+++ G+ G GKTT +G
Sbjct: 60  VGVEVTKSLTPGQVFVKIVREELEKAMGEANEELSLN-AQPPAVVMMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + +   K V++ + D +R AAI QL+  A     DF  S+I      +A  A   
Sbjct: 119 KLAKFLKERKKKSVLVVSADVYRPAAIKQLETLATEVDVDFFPSDISQKPVDIATAAITH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K +DV+++DTAGRLH +S +M  I  +   +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFIDVVLVDTAGRLHVDSDMMDEIKDLHSAIN------PIETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK DG ARGG  + I      P+ F+GVGE  + LEPF     ++
Sbjct: 233 AKAFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|307596389|ref|YP_003902706.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Vulcanisaeta distributa DSM 14429]
 gi|307551590|gb|ADN51655.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Vulcanisaeta distributa DSM 14429]
          Length = 446

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/276 (32%), Positives = 138/276 (50%), Gaps = 12/276 (4%)

Query: 45  VREELEDLLIRSDIGVAVA---QKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPL 99
           V  E++ +L+R+D+   V     K +EE   +        S + +LY + + + K L   
Sbjct: 31  VLREIQRILLRADVSADVVLSITKTIEERFRQEKPPQGITSKEFLLYLLYQELVKALGGE 90

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
             P N + S RP+ ++++GV G GKTT   KL++      L+V L   DT+R  A  QLK
Sbjct: 91  EAP-NVNVSKRPYKLMLIGVEGSGKTTSAAKLARFYIKRNLRVGLIETDTYRPGAYHQLK 149

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A+R +A F   E   D  A+     +  Q  +VD++IIDTAGR H N   +    K I
Sbjct: 150 QLAERVNALFYGEENSKDPIAILRHGLEYMQRNRVDLIIIDTAGR-HRNEEELLKEAKAI 208

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
                 D   P  V+ V+DAT G+ A  Q E F        + +TKMD TA+ GG +  V
Sbjct: 209 -----YDEAKPDEVMLVIDATVGRQAAAQTEAFMKYVPIHSVFLTKMDSTAKAGGALTSV 263

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +     + F+GVGE I+++E F A  + + + G  D
Sbjct: 264 IRSGARIKFIGVGEDIDEIEVFDANKYVSRLLGMGD 299


>gi|259909410|ref|YP_002649766.1| signal recognition particle protein [Erwinia pyrifoliae Ep1/96]
 gi|224965032|emb|CAX56563.1| Signal recognition particle protein (Fifty-four homolog) [Erwinia
           pyrifoliae Ep1/96]
 gi|283479488|emb|CAY75404.1| Signal recognition 54 kDa protein (SRP54) [Erwinia pyrifoliae DSM
           12163]
          Length = 453

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 115/212 (54%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A++  
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A +QA+ K  DVL++DTAGRLH +  +M  I ++        
Sbjct: 157 VDFCPSDLSQRPVDIVKNALQQAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A      F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTARAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+GVGE    LEPF     ++ I G  D
Sbjct: 268 KPIKFMGVGEKTEALEPFYPDRIASRILGMGD 299


>gi|307132203|ref|YP_003884219.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Dickeya dadantii 3937]
 gi|306529732|gb|ADM99662.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Dickeya dadantii 3937]
          Length = 453

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 155/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D +++ L ++   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKEQAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV+      Q  +  V   +   +  +++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HDVNKSLTPGQEFVKIVQNELVTAMGEVNQALNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A+    DF  SE       +   A + A+
Sbjct: 121 GKFLREKQKKKVLVVSADVYRPAAIKQLETLAETVGVDFFPSEAHEKPIDIVNRALQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDDAMMDEIKQV---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     +
Sbjct: 232 TAKAFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFYPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|261855005|ref|YP_003262288.1| signal recognition particle protein [Halothiobacillus neapolitanus
           c2]
 gi|261835474|gb|ACX95241.1| signal recognition particle protein [Halothiobacillus neapolitanus
           c2]
          Length = 451

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 149/288 (51%), Gaps = 16/288 (5%)

Query: 37  SSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDV 88
             R  +D +++ L ++   L+ +D+ + V +  V ++  +    +V       Q  +  V
Sbjct: 19  QGRLTEDNIKDALREVRMALLEADVALPVVRDFVNQVKERAVGAEVIKSLKPGQVFIKVV 78

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAG 147
           S+ +  ++   +   N   +  P V+L+ G+ G GKTT +GKL + + +    KV++ + 
Sbjct: 79  SDELTALMGAENSALNL-AAQPPAVVLMAGLQGAGKTTTVGKLGRLLRTREQKKVLVVSA 137

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D +R AAI QL+  A +   DF  S+ G     +   A KQA+    DVLI+DTAGRLH 
Sbjct: 138 DVYRPAAIKQLETVAKQVGVDFFPSDAGQKPLDIVQSALKQARVGFYDVLIVDTAGRLHV 197

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           ++ +M  + ++   L       P   L V+DA TGQ+A    + F+ V   TG+++TK D
Sbjct: 198 DAEMMDEVRQLHAALN------PVETLFVVDAMTGQDAANTAKAFNEVLPLTGVVLTKAD 251

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G ARGG  + +      P+ F+G+GE ++ LEPF     ++ I G  D
Sbjct: 252 GDARGGAALSVRAITGKPIKFIGMGEKLDALEPFHPDRIASRILGMGD 299


>gi|159905503|ref|YP_001549165.1| signal recognition particle protein Srp54 [Methanococcus
           maripaludis C6]
 gi|238686963|sp|A9A9B0|SRP54_METM6 RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|159886996|gb|ABX01933.1| GTP-binding signal recognition particle SRP54 G- domain
           [Methanococcus maripaludis C6]
          Length = 450

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 152/284 (53%), Gaps = 25/284 (8%)

Query: 45  VREELEDL---LIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93
           V+E ++D+   LI+SD+ V         + +K +EE   K  +K   + +++YD  EL+ 
Sbjct: 27  VKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYD--ELV- 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K+L    +    D S +  VIL++G+ G GKTT   KL++ +   GL+  L A D +R A
Sbjct: 84  KLLGETIQKLELDASKK-SVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPA 142

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAA-LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           A  QLK  +++ +      E  +     +  E  ++   KKVDV+IIDTAGR      L+
Sbjct: 143 AYQQLKQLSEKINVPLFGDETRTKTPVDITKEGMEKL--KKVDVIIIDTAGRHKEEEGLL 200

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMDGTAR 271
           A + +M       D   P+ ++ V+D T GQ A  Q + F  +V+    +++TK+DG+A+
Sbjct: 201 AEMKEM------KDLTNPNEIILVIDGTLGQQAKNQAKAFKDSVSEIGSILVTKLDGSAK 254

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GGG +  V     P+ F+G GEG+++LE F  K F + I G  D
Sbjct: 255 GGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGFGD 298


>gi|254672835|emb|CBA07016.1| signal recognition particle protein [Neisseria meningitidis
           alpha275]
          Length = 446

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 151/286 (52%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V       Q  +  V++ + 
Sbjct: 14  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVVGSLTPDQAFIGVVNKALT 73

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT  GKL++ + +D   KV++ + D +R 
Sbjct: 74  ELMGRENKTLDLSVAP-PAVVLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSADVYRP 132

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 133 AAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMM 192

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TKMDG 
Sbjct: 193 NEIKAL---------HAAVNPVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGD 243

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 244 SRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 289


>gi|225018488|ref|ZP_03707680.1| hypothetical protein CLOSTMETH_02435 [Clostridium methylpentosum
           DSM 5476]
 gi|224948689|gb|EEG29898.1| hypothetical protein CLOSTMETH_02435 [Clostridium methylpentosum
           DSM 5476]
          Length = 453

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/271 (33%), Positives = 144/271 (53%), Gaps = 19/271 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  V ++  +    DV       Q+V+  V+E +  ++   S+    +F
Sbjct: 39  LLEADVNYKVVKDFVAKVSERSVGSDVLESLTPAQQVIKIVNEELCSLMG--SEHTRIEF 96

Query: 108 -SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            S  P VI++ G+ G GKTT   KL+K     G + +L A D +R AAI QLK+  ++  
Sbjct: 97  PSKPPCVIMMCGLQGSGKTTHSAKLAKYFKSQGHRPLLVACDVYRPAAIQQLKVVGEKAG 156

Query: 167 ADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           A     E+G +D   +A EA K A+    D++I+DTAGRLH +  LM         LK +
Sbjct: 157 ASVF--EMGNTDPVEIAKEALKHAKDYGNDLVILDTAGRLHIDEQLM-------NELKNI 207

Query: 226 DPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P+ +L V+D+ TGQ+A+   + F+      G+I+TK+DG  RGG  + ++     
Sbjct: 208 KAEVNPNEILLVVDSMTGQDAVNVAKSFNETLEIDGVILTKLDGDTRGGAALSVLAVTGK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           PV F G+GE ++DLEPF  +  ++ I G  D
Sbjct: 268 PVKFAGIGEKLDDLEPFHPERMASRILGMGD 298


>gi|332705584|ref|ZP_08425660.1| signal recognition particle subunit FFH/SRP54 [Lyngbya majuscula
           3L]
 gi|332355376|gb|EGJ34840.1| signal recognition particle subunit FFH/SRP54 [Lyngbya majuscula
           3L]
          Length = 479

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 149/295 (50%), Gaps = 29/295 (9%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ--------RVL 85
           D ISS  + D ++E +   L+ +D+ + V +  V E+  K    +V+          +++
Sbjct: 20  DKISSSNIQDALKE-VRRALLSADVNLQVVKDFVAEVEAKAQGSEVTSGVRPDQQFIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL++         P V+L+ G+ G GKTT   KL+  +       
Sbjct: 79  YD--ELVQVMGETNVPLAQA-----DTPPTVVLMAGLQGTGKTTASAKLALHLRKQERSC 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200
           +L A D +R AAIDQL     +   D    E+G++A    +A +  ++A+A  +D +IID
Sbjct: 132 LLVATDVYRPAAIDQLVTLGQQI--DVPVFELGTEADPVEIARQGVERAKAMAIDTVIID 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  +M  + ++   ++      PH  L V+DA TGQ A      FH   G TG
Sbjct: 190 TAGRLQIDQEMMGELSRIKETVQ------PHDTLLVVDAMTGQEAATLTRTFHEQIGITG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I++K+DG +RGG  + +      P+ F+GVGE +  L+PF     ++ I G  D
Sbjct: 244 AILSKLDGDSRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298


>gi|329947898|ref|ZP_08294830.1| signal recognition particle protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328523522|gb|EGF50620.1| signal recognition particle protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 562

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 130/240 (54%), Gaps = 13/240 (5%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           Q+V+  V+E + ++L   ++  NW     P +I++ G+ G GKTT+ GKL + + D G +
Sbjct: 72  QQVVKIVNEELIEVLGGETREINW-ADRGPTIIMLAGLQGAGKTTLAGKLGRWLRDQGKR 130

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLI 198
           V+L A D  R  A+ QL + A+R        E G+   D  A+A    +QA+    DV++
Sbjct: 131 VLLVASDLQRPNAVTQLSVVAERAGVHVWAPEPGNGVGDPVAVARSGVEQARTNGYDVVV 190

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL  ++ +M    + IR+    D   PH +L VLDA  GQ+A+     F    G 
Sbjct: 191 VDTAGRLGVDAEMM---DQAIRIR---DAVVPHEILFVLDAMVGQDAVNTSVAFRDGVGF 244

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           TG++++K+DG ARGG  + +      PV F   GEG+ D E F A   ++ I   LD G+
Sbjct: 245 TGVVLSKLDGDARGGAALSVRGVTGAPVLFSSTGEGLTDFERFHADRMASRI---LDMGD 301


>gi|308048457|ref|YP_003912023.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ferrimonas
           balearica DSM 9799]
 gi|307630647|gb|ADN74949.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ferrimonas
           balearica DSM 9799]
          Length = 455

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FQNLSERLNQTLKNISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVRERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +   +   ++  N   +  P VI++ G+ G GKTT +GKL
Sbjct: 62  TEVSKSLTPGQAFIKIVRTEMEAAMGEANEALNL-AAQPPAVIMMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K V++ + D +R AAI QL+  A     +F  S +     A+A  A   A+
Sbjct: 121 AKFLKERHKKSVLVVSADVYRPAAIKQLETLASDIGVEFFPSTVEQKPVAIATAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DV+I+DTAGRLH +S +M  I  +         HA   P   L  +DA TGQ+A  
Sbjct: 181 RKFFDVVIVDTAGRLHVDSDMMEEIKAL---------HAAINPVETLFTVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     +
Sbjct: 232 TAKAFNDALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|302811179|ref|XP_002987279.1| hypothetical protein SELMODRAFT_158663 [Selaginella moellendorffii]
 gi|302815043|ref|XP_002989204.1| hypothetical protein SELMODRAFT_272046 [Selaginella moellendorffii]
 gi|300143104|gb|EFJ09798.1| hypothetical protein SELMODRAFT_272046 [Selaginella moellendorffii]
 gi|300144914|gb|EFJ11594.1| hypothetical protein SELMODRAFT_158663 [Selaginella moellendorffii]
          Length = 491

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 138/277 (49%), Gaps = 18/277 (6%)

Query: 48  ELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           E+   L ++D+ + + Q       KIV  E L   + K   +Q+ +++  EL   ML P 
Sbjct: 34  EISRALFQADVQLKMVQTMCTNIKKIVNLEDLAAGHNKRRIIQQAVFN--ELCS-MLDP- 89

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            KP       +P VI+ VG+ G GKTT   K +      G K  L   DTFR+ A DQLK
Sbjct: 90  GKPSFSPQKGKPSVIMFVGLQGSGKTTTCTKYAYHYQKKGFKPALICADTFRAGAFDQLK 149

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A + +  F  S   +D   +A E  +  +A+K D++I+DT+GR    + L   + ++ 
Sbjct: 150 QNATKANIPFYGSYTETDPVKIAQEGLETFRAEKCDLIIVDTSGRHKQEAALFEEMRQVA 209

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
                    +P  V+ V+D + GQ A  Q + F   A    +I+TKMDG A+GGG +  V
Sbjct: 210 AAT------SPDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIITKMDGHAKGGGALSAV 263

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
              K PV F+G GE I++ E F  K F + + G  D+
Sbjct: 264 AATKSPVIFIGTGEHIDEFETFETKPFVSRLLGMGDW 300


>gi|126724941|ref|ZP_01740784.1| signal recognition particle protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126706105|gb|EBA05195.1| signal recognition particle protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 499

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 150/286 (52%), Gaps = 20/286 (6%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVE--------ELLTKRYAKDVSVQRVLYDVSE 90
           D+ V+  L ++   L+ +D+ +AVA+  V+        + +TK       V ++++D  E
Sbjct: 24  DEDVKTALREVRVALLEADVSLAVARDFVKAVQDKASGQAVTKSVTPGQQVVKIVHD--E 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT 149
           L+H +    + P      + P  IL+VG+ G GKTT   KL+K++++  G +V++A+ D 
Sbjct: 82  LVHVLAGDNAVPGELKIDNAPAPILMVGLQGSGKTTTTAKLAKRLTEKNGKRVLMASLDV 141

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            R AA++QL I  ++   D +    G     +A  A +QA     DV ++DTAGRLH + 
Sbjct: 142 NRPAAMEQLAILGNQIGVDTLPIVAGQKPVDIAKRAKQQATLGGYDVYMLDTAGRLHIDE 201

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
           +LM  +  +  V K      P   L V+D  TGQ+A+   E F    G +G+++T+MDG 
Sbjct: 202 VLMEEVETVRDVTK------PRETLLVVDGLTGQDAVNVAEEFDGKIGVSGVVLTRMDGD 255

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            RGG  + +      P+ F+G+GE ++ LE F  +  +  I G  D
Sbjct: 256 GRGGAALSMRAVTGKPIKFVGLGEKMDALEEFHPERVAGRILGMGD 301


>gi|121533796|ref|ZP_01665623.1| signal recognition particle protein [Thermosinus carboxydivorans
           Nor1]
 gi|121307787|gb|EAX48702.1| signal recognition particle protein [Thermosinus carboxydivorans
           Nor1]
          Length = 444

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 113/208 (54%), Gaps = 6/208 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V+++VG+ G GKTT  GKL+  +     + +L A D +R AAI QL++  ++   
Sbjct: 96  SRPPTVVMLVGLQGAGKTTTAGKLAHLLKKQNKRPLLVAADVYRPAAIKQLQVLGEKLGL 155

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                        +A +A + A +   D++IIDTAGRLH N  LM  +  +   +K    
Sbjct: 156 PVFTLGDKESPVRIAQKAIEHALSHARDIVIIDTAGRLHINEQLMDELKAIKNTVK---- 211

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             PH +L V+DA TGQ+A+   E F+   G  G+I+TK+DG ARGG  + +      P+ 
Sbjct: 212 --PHEILLVVDAMTGQDAVTVAEAFNEQLGIDGVILTKLDGDARGGAALSVRAVTGRPIK 269

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++G+GE ++ LEPF     ++ I G  D
Sbjct: 270 YVGMGEKLDALEPFYPDRMASRILGMGD 297


>gi|51246651|ref|YP_066535.1| signal recognition particle protein (SRP54) [Desulfotalea
           psychrophila LSv54]
 gi|50877688|emb|CAG37528.1| probable signal recognition particle protein (SRP54) [Desulfotalea
           psychrophila LSv54]
          Length = 480

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 149/285 (52%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSE 90
           ++   + D +RE +   L+ +D+   VA++ V  +  K   ++V       Q+++  V E
Sbjct: 50  LTEDNIQDAMRE-VRIALLDADVSFKVAKQFVASVTEKAIGREVGKSLSPGQQIIKIVHE 108

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  +L   +     D   +P VI++ G+ G GKTT  GKL+K + D G +  L   D +
Sbjct: 109 ELVSLLGGDTAQIELD-GRQPVVIMMAGLQGSGKTTTSGKLAKMLKDKGRRPYLVPADVY 167

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI+QL++  DR       S   +    +  +A  +A+ K  D +IIDTAGRLH +++
Sbjct: 168 RPAAIEQLQVLGDRLDVPVHPSTTATKPVDICTQAIAEAKIKNYDTVIIDTAGRLHVDNV 227

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + ++   ++         +L V DA TGQ+A+   + F+     +G+I+TKM+G A
Sbjct: 228 LMGELQEIQAAVQL------SEILFVADAMTGQDAVTVADKFNTDLEISGIILTKMEGDA 281

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+GVGE ++ LE F  +  ++ I G  D
Sbjct: 282 RGGAALSIKTVTGKPIKFVGVGEALDALEVFHPERVASRILGMGD 326


>gi|303319737|ref|XP_003069868.1| signal recognition particle protein, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240109554|gb|EER27723.1| signal recognition particle protein, putative [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 530

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 148/301 (49%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   ++D+  S  LD    D + +E+   L+ +D+ V + Q + + +        +   
Sbjct: 9   RINAAVSDLTRSNDLDEKVFDSMLKEICAALLSADVNVRLVQNLRKSIKSSVNFSSIPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P S+PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--QLV-ALVDPHSEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D A +A +   + + +K 
Sbjct: 125 YQTRGFKSALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAADGVAKFKKEKF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +V+I+DT+GR      L A + ++   +K      P   + VLD++ GQ A  Q   F A
Sbjct: 185 EVIIVDTSGRHKQEEDLFAEMTQIQNAVK------PDQTILVLDSSIGQAAEAQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|315049435|ref|XP_003174092.1| signal recognition particle protein [Arthroderma gypseum CBS
           118893]
 gi|311342059|gb|EFR01262.1| signal recognition particle protein [Arthroderma gypseum CBS
           118893]
          Length = 543

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 150/301 (49%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   ++D+  S  +D    D + +E+   L+ +D+ V + Q++ + +        +   
Sbjct: 9   RINAAVSDLTRSNTVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQLPSIPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P ++PF      +P+VI++VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--QLV-ALVDPHAEPFKPK-KGKPNVIMMVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D   ++ E   + + ++ 
Sbjct: 125 YQTKGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR      L   + ++   +K      P   + VLD+T GQ A  Q   F +
Sbjct: 185 DIIIVDTSGRHRQEEDLFEEMTQIQAAIK------PDQTIMVLDSTIGQAAETQSAAFKS 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V   + P+ FLG GE + DLE F  + F   + G  
Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPQPFVQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|1711510|sp|P49966|SR542_ARATH RecName: Full=Signal recognition particle 54 kDa protein 2;
           Short=SRP54
 gi|515679|gb|AAA66199.1| signal recognition particle 54 kDa subunit [Arabidopsis thaliana]
          Length = 495

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 143/289 (49%), Gaps = 19/289 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86
           II  + L+D + E +   L++SD+   + +       KIV  E L   + K   +++ ++
Sbjct: 22  IIDEKALNDCLNE-ITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAIF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             SEL  KML P    F      +P V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  --SELC-KMLDPGKSAFAPK-KAKPRVVMFVGLQGSGKTTTCTKYAYYHQKKGYKPALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ A DQLK  A ++   +  S  GSD   +A E   + + +  D++I+DT+GR  
Sbjct: 137 ADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHK 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
             + L   + ++    K      P  V+ V+D++ GQ A  Q   F        +I+TKM
Sbjct: 197 QQASLFEEMRQISEATK------PDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKM 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG A+GGG +  V   K PV F+G GE +++ E F AK F + + G  D
Sbjct: 251 DGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNGD 299


>gi|150402723|ref|YP_001330017.1| signal recognition particle protein Srp54 [Methanococcus
           maripaludis C7]
 gi|166222336|sp|A6VHE0|SRP54_METM7 RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|150033753|gb|ABR65866.1| GTP-binding signal recognition particle SRP54 G- domain
           [Methanococcus maripaludis C7]
          Length = 450

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 152/284 (53%), Gaps = 25/284 (8%)

Query: 45  VREELEDL---LIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93
           V+E ++D+   LI+SD+ V         + +K +EE   K  +K   + +++YD  EL++
Sbjct: 27  VKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYD--ELVN 84

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            +L   ++    D S +  VIL++G+ G GKTT   KL++ +   GL+  L A D +R A
Sbjct: 85  -LLGETTQKLELDPSKK-SVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVYRPA 142

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAA-LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           A  QLK  +++ +      E  +     +  E  ++   KKVDV+IIDTAGR      L+
Sbjct: 143 AYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKL--KKVDVIIIDTAGRHKEEEGLL 200

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDGTAR 271
           A + +M       D   P  ++ V+D T GQ A  Q + F  +V+    +++TK+DG+A+
Sbjct: 201 AEMREM------KDLTNPTEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAK 254

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GGG +  V     P+ F+G GEG+++LE F  K F + I G  D
Sbjct: 255 GGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGMGD 298


>gi|223986417|ref|ZP_03636422.1| hypothetical protein HOLDEFILI_03734 [Holdemania filiformis DSM
           12042]
 gi|223961613|gb|EEF66120.1| hypothetical protein HOLDEFILI_03734 [Holdemania filiformis DSM
           12042]
          Length = 462

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 164/321 (51%), Gaps = 32/321 (9%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A ESL+   +L K F + S + K      ++ + +DD +RE +   L+ +D+      K
Sbjct: 1   MAFESLT--ERLNKAFKNISGQGK------LTEKNMDDMLRE-VRLALLEADVNY----K 47

Query: 66  IVEELLTKRYAKDVSVQRVLYD-------VSELIHKMLMPL--SKPFNWDFSHRPH-VIL 115
           IV++ L K   KD +V + +Y        V +++H  L+ L   K    +F      V++
Sbjct: 48  IVKDFLVK--VKDKAVGQEVYTSLNPSQMVVKIVHDELVALLGEKEATLNFKESGMTVVM 105

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +VG+ G GKTT +GK++  +     K  ML A D  R AAI+QL+       A+      
Sbjct: 106 MVGLQGTGKTTSVGKITSLLKRKYNKHPMLIAADVIRPAAIEQLQTLGKEVGAEVFSLGT 165

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            +DA     +    A+    D+++IDTAGRLH +  LM  + K+  + K      P  +L
Sbjct: 166 ETDAVETVRQGLAHAKEIGADIVLIDTAGRLHIDEALMEELAKIKEIAK------PDDIL 219

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
             +DA TGQ+ +   + FH     TGL++TK+DG +RGGG++ +    ++PV F+G+GE 
Sbjct: 220 LTVDAMTGQDIINVAQAFHEKLDVTGLVVTKLDGDSRGGGVLSVRSITQVPVKFIGLGEK 279

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           + DL+ F     +  I G  D
Sbjct: 280 MEDLDVFYPDRMADRILGMGD 300


>gi|240277685|gb|EER41193.1| signal recognition particle protein [Ajellomyces capsulatus H143]
 gi|325093770|gb|EGC47080.1| signal recognition particle protein SRP54 [Ajellomyces capsulatus
           H88]
          Length = 527

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 145/301 (48%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  +D    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVNDLTRSNNVDAQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPFSSLPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P ++PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKTVFD--QLV-ALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ 
Sbjct: 125 YQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR      L   + ++   +K      P   + VLD T GQ A  Q   F A
Sbjct: 185 DIIIVDTSGRHKQEEDLFVEMTQIQTAIK------PDQTILVLDGTIGQAAESQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 AADFGAIIITKTDGNAAGGGAISAVAATHTPIIFLGTGEHMLDLERFSPKPFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|217076198|ref|YP_002333914.1| ffh signal recognition particle protein [Thermosipho africanus
           TCF52B]
 gi|217036051|gb|ACJ74573.1| ffh signal recognition particle protein [Thermosipho africanus
           TCF52B]
          Length = 435

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 152/302 (50%), Gaps = 16/302 (5%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           KL+K F + S K K      I+ + + + ++  ++  L+ +D+   V ++ + E+  K  
Sbjct: 8   KLSKAFKTLSGKGK------ITEKNIKEAIKM-VKLSLLEADVNYKVVKEFIAEVTEKAT 60

Query: 76  AKDV--SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            ++V  S+      +  L  +++  + +       H P  I++VG+ G GKTT   KL+ 
Sbjct: 61  GEEVLKSLTPDQMFIKILRDELIRVMGEKSQLSLVHSPSYIMMVGLQGSGKTTSAAKLAN 120

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            +   G K  L A DT+R AAIDQL     +        +   D   +  EA K+ +   
Sbjct: 121 LLKKKGKKTFLVAADTYRPAAIDQLITLGKKIDVPVFYGD-RKDPVKIVREAIKEVKDSG 179

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            +V+I DTAGRLH +  +M  + ++  +L       P  +L V+DA  GQ+A+   ++F+
Sbjct: 180 YNVVIFDTAGRLHVDDEMMNELEEIKDILN------PDEILMVVDAMAGQDAVNSAKIFN 233

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                TG ++TKMDG ARGG ++ I      P+ F+GVGE I DLE F  +  ++ I G 
Sbjct: 234 ERLDVTGYVVTKMDGDARGGVILSIRYITNKPIKFIGVGEKIEDLEEFHPERIASRILGL 293

Query: 314 LD 315
            D
Sbjct: 294 GD 295


>gi|50555115|ref|XP_504966.1| YALI0F03839p [Yarrowia lipolytica]
 gi|54042305|sp|Q99150|SRP54_YARLI RecName: Full=Signal recognition particle 54 kDa protein homolog;
           Short=SRP54
 gi|49650836|emb|CAG77773.1| YALI0F03839p [Yarrowia lipolytica]
          Length = 536

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 142/285 (49%), Gaps = 23/285 (8%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA------KDVSVQRVLYDVSELIHKML 96
           D + +E+   L+ SD+ + +  ++ +++     A      K   +Q+ L+D  EL++ + 
Sbjct: 28  DAMLKEVCSALLESDVNIKLVSQLRQKVKNSVKATPNGASKKKVIQKALFD--ELVNLVG 85

Query: 97  MPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           +  S      F     + +V++ VG+ G GKTT   KL+      G KV L   DTFR+ 
Sbjct: 86  VDESAASAAKFKPQKGKSNVVMFVGLQGSGKTTSCTKLAVYYQRRGFKVGLVCADTFRAG 145

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL-- 211
           A DQLK  A +    F  S   +D  A+A E   + + +K +++I+DT+GR    S L  
Sbjct: 146 AFDQLKQNATKAKIPFFGSYTETDPVAVAAEGVAKFKKEKFEIIIVDTSGRHRQESELFT 205

Query: 212 -MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
            M  IG  ++         P S + VLDA+ GQ A  Q   F   +    +I+TKMDG A
Sbjct: 206 EMVDIGAAVK---------PDSTIMVLDASIGQAAEPQSRAFKDASDFGSIILTKMDGHA 256

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GGG I  V     P+ F+G GE I+DLE F  K F + + G  D
Sbjct: 257 KGGGAISAVAATNTPIIFIGTGEHIHDLEAFSPKQFISKLLGIGD 301


>gi|56752330|ref|YP_173031.1| signal recognition particle receptor [Synechococcus elongatus PCC
           6301]
 gi|56687289|dbj|BAD80511.1| signal recognition particle receptor [Synechococcus elongatus PCC
           6301]
          Length = 496

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 151/295 (51%), Gaps = 29/295 (9%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA--------KDVSVQRVL 85
           D IS   + + ++E +   L+ +D+ + V ++ + ++  K            D    +V+
Sbjct: 31  DKISESNVQEALKE-VRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKVV 89

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL++      +  P VIL+ G+ G GKTT   KL+  +   G   
Sbjct: 90  YD--ELVQVMGETHVPLAQ-----AAKAPTVILMAGLQGAGKTTATAKLALHLRKEGRST 142

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200
           +L A D +R AAIDQL     +   D    E+GSDA    +A +  ++A+ + +D +I+D
Sbjct: 143 LLVATDVYRPAAIDQLITLGKQI--DVPVFELGSDANPVEIARQGVEKARQEGIDTVIVD 200

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  ++ +M  + ++   +      APH VL V+D+  GQ A      FH   G TG
Sbjct: 201 TAGRLQIDTEMMEELAQVKEAI------APHEVLLVVDSMIGQEAPSLTRSFHERIGITG 254

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I+TK+DG +RGG  + I      P+ F+G+GE +  L+PF  +  ++ I G  D
Sbjct: 255 AILTKLDGDSRGGAALSIRRVSGHPIKFVGLGEKVEALQPFHPERMASRILGMGD 309


>gi|169827098|ref|YP_001697256.1| signal recognition particle-like (SRP) component [Lysinibacillus
           sphaericus C3-41]
 gi|168991586|gb|ACA39126.1| signal recognition particle-like (SRP) component [Lysinibacillus
           sphaericus C3-41]
          Length = 452

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 133/237 (56%), Gaps = 12/237 (5%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GL 140
           Q+V+  V + + +++     P  ++ +  P VI++VG+ G GKTT  GKL+  +      
Sbjct: 73  QQVIKIVQDELTELMGGEQSPIKFN-TKPPTVIMMVGLQGAGKTTTTGKLANVLRKKYNR 131

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLI 198
           K +L A D +R AA+ QL+    + S       +G+D +   +A +A ++A+    DV+I
Sbjct: 132 KPLLVAADVYRPAAVQQLETLGKQLSLPVFS--LGTDISPVKIARQAIEKAKEDHHDVVI 189

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDTAGRLH +  LM  + K IR LK      P  V  V+DA TGQ+A+   E F+   G 
Sbjct: 190 IDTAGRLHIDEDLMQEL-KDIRALKE-----PDEVFLVVDAMTGQDAVNVAESFNEAIGI 243

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG+++TK+DG  RGG  + I    + P+ F+G+GE ++ LEPF  +  ++ I G  D
Sbjct: 244 TGVVLTKLDGDTRGGAALSIRSVTQKPIKFVGMGEKMDALEPFHPERMASRILGMGD 300


>gi|225557139|gb|EEH05426.1| signal recognition particle protein SRP54 [Ajellomyces capsulatus
           G186AR]
          Length = 527

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 145/301 (48%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  +D    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVNDLTRSNNVDAQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPFSSLPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P ++PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKTVFD--QLV-ALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ 
Sbjct: 125 YQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR      L   + ++   +K      P   + VLD T GQ A  Q   F A
Sbjct: 185 DIIIVDTSGRHKQEEDLFVEMTQIQTAIK------PDQTILVLDGTIGQAAESQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 AADFGAIIITKTDGNAAGGGAISAVAATHTPIIFLGTGEHMLDLERFSPKPFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|225619739|ref|YP_002720996.1| signal recognition particle GTPase [Brachyspira hyodysenteriae WA1]
 gi|225214558|gb|ACN83292.1| Signal recognition particle GTPase [Brachyspira hyodysenteriae WA1]
          Length = 323

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/274 (34%), Positives = 151/274 (55%), Gaps = 13/274 (4%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVS-VQRVLYDVSELI 92
           ++  ++D     LE+ LI +D GV   + I+ +L   + K   KD S  ++ L ++  LI
Sbjct: 53  NTSSINDEFFASLENTLITADAGVETTKDIISKLRDVIEKENIKDPSEAKKYLREI--LI 110

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            K +   S+    +      ++ +VGVNGVGKTT I KL+  + +   KV+LAA DTFR+
Sbjct: 111 SKFI---SRKIELN---GKTILFIVGVNGVGKTTSIAKLANILKNDH-KVILAAADTFRA 163

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL+ WA+R S   V  +   D A++ + A  +A+A   D++I+DTAGR HN   L+
Sbjct: 164 AAIEQLEEWANRLSVTIVKGQQAGDPASVLFSALDKAKATDADIVIVDTAGRFHNQENLV 223

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + KM ++            + VLDA  G N + Q ++F       G I++K+D TA+G
Sbjct: 224 RQLEKMKKIATERFTEFKFVPILVLDANVGHNGIEQAKVFTNALDIQGAIVSKLDSTAKG 283

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G  I I     +P+Y+ G GE ++D + F A+ F
Sbjct: 284 GVAISIAHYLSLPIYYGGFGEKVDDFKEFDAESF 317


>gi|226313205|ref|YP_002773099.1| signal recognition particle protein fifty-four homolog
           [Brevibacillus brevis NBRC 100599]
 gi|226096153|dbj|BAH44595.1| signal recognition particle protein fifty-four homolog
           [Brevibacillus brevis NBRC 100599]
          Length = 470

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 116/210 (55%), Gaps = 7/210 (3%)

Query: 107 FSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            +HRP  VI++ G+ G GKTT  GKL+K +     K +L AGD +R AAI QL++  ++ 
Sbjct: 96  MAHRPPTVIMMAGLQGAGKTTTTGKLAKYLQKQNRKPLLVAGDIYRPAAIKQLQVLGEQL 155

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +              +A +A + A+   +DV++IDTAGRLH +  LM  + ++  V K  
Sbjct: 156 NVPVFTLGDQVSPVEIARQAIEHAKTNHLDVVLIDTAGRLHIDEALMDELKQIREVTK-- 213

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  +L V+DA TGQ+A+   E F++    TG+++TK+DG  RGG  + +      P
Sbjct: 214 ----PDEILLVVDAMTGQDAVNVAESFNSQLELTGVVLTKLDGDTRGGAALSVKAVTGKP 269

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F  +GE ++ LEPF     ++ I G  D
Sbjct: 270 IKFAAMGEKLDALEPFHPDRMASRILGMGD 299


>gi|7576789|gb|AAF63991.1| unknown in vivo-induced protein 134-21 [Pseudomonas aeruginosa]
          Length = 163

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 101/148 (68%), Gaps = 3/148 (2%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR 110
           L+ +D+GV     IV+ L TKR A K+++    LY  + E +  +L P+ +P   D +  
Sbjct: 17  LLTADVGVEATTLIVQNL-TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVARE 75

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+VILVVGVNGVGKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +
Sbjct: 76  PYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVI 135

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLI 198
               G+D+A++ ++A + A+A+ +DVLI
Sbjct: 136 AQHTGADSASVIFDAVQAAKARGIDVLI 163


>gi|194336566|ref|YP_002018360.1| signal recognition particle protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309043|gb|ACF43743.1| signal recognition particle protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 449

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 138/268 (51%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   VA+K+++++  K   + V       Q ++  V + + +++    KP N   
Sbjct: 38  LLGADVNYKVAKKLIDDIREKSLGEQVIKSVSPAQMIVKIVYDELTELMGGEQKPLNLSP 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
              P VI+V G+ G GKTT   KL+ ++  +G + ML A D +R AAIDQLK    +   
Sbjct: 98  KKLPAVIMVAGLQGSGKTTFCAKLALRLKKSGKQPMLVAADVYRPAAIDQLKALGQQVDV 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                E   DA   A +  + A++   DV+I+DTAGRL  + ++MA    +   LK    
Sbjct: 158 PVFAIE-EQDAMKAALQGLEAARSAAKDVVIVDTAGRLQIDQVMMAEAESLKHALK---- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+  GQ A+   + F+      G+++TK+DG +RGG  + I    + P+ 
Sbjct: 213 --PDELLFVVDSMMGQEAVNTAKAFNDRLDFDGVVLTKLDGDSRGGAALSIRQVVEKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+ +GE ++DL+ F     +  I G  D
Sbjct: 271 FISIGEKVDDLDLFYPDRMAQRILGMGD 298


>gi|94970062|ref|YP_592110.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552112|gb|ABF42036.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus
           Koribacter versatilis Ellin345]
          Length = 454

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/275 (32%), Positives = 147/275 (53%), Gaps = 17/275 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           ++   +++ +RE +   L+ +D+   V +++V+ +  K   +DV       ++V+  V +
Sbjct: 22  LTPENMEEALRE-IRLALLEADVNFKVVKEVVDRIQYKALGEDVMTALSPAEQVVKIVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  +L   +    +  S  P +IL+ G+ G GKTT  GKL+  + + G + ML + D +
Sbjct: 81  ELIAILGKDTAKVKF-ASQPPTIILMAGLQGSGKTTTSGKLAHWLKNGGHRPMLVSVDVY 139

Query: 151 RSAAIDQLKIWADRTSADFV---CSEIGSDAAA-LAYEAFKQAQAKKVDVLIIDTAGRLH 206
           R AA +QLK+ A   +A        E  +D    LA EA ++A +   ++LI+DTAGRLH
Sbjct: 140 RPAAREQLKVVAQAINAKLYEGKVEEANTDTVVRLAKEARREAISNGCNILIVDTAGRLH 199

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  LM  +  +  +L       P  +L V DA TGQ+A+   + FH     TG+++TKM
Sbjct: 200 IDDQLMDEMQHLKTLLN------PQEILFVADAMTGQDAVNSAKEFHDKLTLTGVVLTKM 253

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           DG ARGG  + I      P+ F+GVGE  + LEPF
Sbjct: 254 DGDARGGAALSIRQVTGQPIKFIGVGEKYDALEPF 288


>gi|218185264|gb|EEC67691.1| hypothetical protein OsI_35150 [Oryza sativa Indica Group]
          Length = 550

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 152/304 (50%), Gaps = 13/304 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT G  S   KL+ G+ D+++   + + +R+ +   L+ +D+ + V ++ V  +  K  
Sbjct: 74  QLTTGLESAWNKLR-GV-DVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVSSISEKAL 130

Query: 76  AKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKL 131
             D +   R    + +++H  L+ L      D       P VIL+ G+ GVGKTTV  KL
Sbjct: 131 GSDLIRGVRPEQQLVKIVHDELVQLMGGEVSDLVFAKSGPTVILLAGLQGVGKTTVCAKL 190

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   ML A D +R AAIDQL I  ++           +  A +   A ++A+ 
Sbjct: 191 AFYLKKLGKSCMLVAADVYRPAAIDQLTILGEQVGVPVYSERTEAKPAQITKNAVEEAKR 250

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D +++DTAGRL  +  +M  + ++ + +       P  VL V+DA TGQ A   V  
Sbjct: 251 KNIDAIVMDTAGRLQIDKSMMVELKEVKKAVN------PTEVLLVVDAMTGQEAAALVTT 304

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I+TK+DG +RGG  + +      P+ F+G GE + DLE F     +  + 
Sbjct: 305 FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERMEDLELFYPDRMAQRVL 364

Query: 312 GCLD 315
           G  D
Sbjct: 365 GMGD 368


>gi|116629442|ref|YP_814614.1| Signal recognition particle GTPase [Lactobacillus gasseri ATCC
           33323]
 gi|311110910|ref|ZP_07712307.1| signal recognition particle protein [Lactobacillus gasseri MV-22]
 gi|116095024|gb|ABJ60176.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Lactobacillus gasseri ATCC 33323]
 gi|311066064|gb|EFQ46404.1| signal recognition particle protein [Lactobacillus gasseri MV-22]
          Length = 476

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 156/306 (50%), Gaps = 20/306 (6%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + S +L++ + ++     IS   ++D  RE +   L+ +D+   V +  ++++  +  
Sbjct: 3   FENLSERLQKALKNLTGKGKISEADINDASRE-IRLALLEADVNFKVVKDFIKKIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V + + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVDDELTKMMGEEAVSLNKS-QHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+   M +   + +L AGD +R AAIDQLK    + +   V SE   D A +     ++A
Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIDQLKQIGQQLNVP-VYSEDNQDVAEIVKHGLEEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM  + ++  V        P + L V+DA TGQ A +  
Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDELKRVTAVAH------PDNTLLVVDAMTGQAATQVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+I+TK+DG  RGG  + I     +P+ F G GE + DL  F     ++ 
Sbjct: 234 EGFNNDLDLTGIILTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|282899599|ref|ZP_06307563.1| Signal recognition particle protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195478|gb|EFA70411.1| Signal recognition particle protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 480

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 149/295 (50%), Gaps = 29/295 (9%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D IS   + D +RE +   L+ +D+ + V +  + ++ TK    +V           +++
Sbjct: 20  DKISQSNIQDALRE-VRRALLEADVNLQVVKDFIADVETKAQGAEVISGVRPDQQFIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL++  N     +  V+L+ G+ G GKTT   KL+  +       
Sbjct: 79  YD--ELVQVMGEENVPLAEAQN-----QTTVVLMAGLQGTGKTTATAKLALHLRKTNRSC 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200
           +L A D +R AAIDQL     +   D    E+GSDA    +A +  ++A+ + ++ +I+D
Sbjct: 132 LLVATDIYRPAAIDQLVTLGKQI--DVPVFEMGSDADPVEIARQGVERARNEGINTVIVD 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  +MA + ++   ++      P   L V+DA TGQ A      FH   G TG
Sbjct: 190 TAGRLQIDQDMMAELSRIKSTIE------PDETLLVVDAMTGQEAANLTRTFHEQIGITG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I+TKMDG +RGG  + +      P+ F+GVGE +  L+PF     ++ I G  D
Sbjct: 244 AILTKMDGDSRGGAALSVRQISGAPIKFIGVGEKVEALQPFYPDRMASRILGMGD 298


>gi|258623026|ref|ZP_05718039.1| Signal recognition particle GTPase [Vibrio mimicus VM573]
 gi|258623816|ref|ZP_05718773.1| Signal recognition particle GTPase [Vibrio mimicus VM603]
 gi|258583939|gb|EEW08731.1| Signal recognition particle GTPase [Vibrio mimicus VM603]
 gi|258584639|gb|EEW09375.1| Signal recognition particle GTPase [Vibrio mimicus VM573]
          Length = 461

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 155/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A+    DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRL  +  +MA I  + + +      AP   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAI------APVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGIILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|242240277|ref|YP_002988458.1| signal recognition particle protein [Dickeya dadantii Ech703]
 gi|242132334|gb|ACS86636.1| signal recognition particle protein [Dickeya dadantii Ech703]
          Length = 453

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 156/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL DD +++ L ++   L+ +D+ + V ++ +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVREFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HDVNKSLTPGQEFVRIVQNELVAAMGEENQALNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A+    DF  S++      +  +A + A+
Sbjct: 121 GKFLREKQKKKVLVVSADVYRPAAIRQLETLAESVGVDFFPSDVSEKPVNIVGQALQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDDAMMDEIRQV---------HAAINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     +
Sbjct: 232 TAKAFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|311278432|ref|YP_003940663.1| signal recognition particle protein [Enterobacter cloacae SCF1]
 gi|308747627|gb|ADO47379.1| signal recognition particle protein [Enterobacter cloacae SCF1]
          Length = 453

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 116/212 (54%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A +  
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A K+A+ K  DVL++DTAGRLH +  +M  I ++        
Sbjct: 157 VDFFPSDVAQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQV-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 268 KPIKFLGVGEKTDALEPFHPDRIASRILGMGD 299


>gi|194476608|ref|YP_002048787.1| signal recognition particle protein (SRP54) [Paulinella
           chromatophora]
 gi|171191615|gb|ACB42577.1| signal recognition particle protein (SRP54) [Paulinella
           chromatophora]
          Length = 481

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 156/305 (51%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F   S + +E +  +     I+   +++ +++ +   LI +D+ + V ++ +EE+ +K  
Sbjct: 2   FDELSARFEEAVKSLKGLSAITENNVENALKQ-VRRALIEADVSLVVVKEFMEEVRSKSI 60

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+ +  V E + +++   + P +   SH   V+L+ G+ G GKTT   K
Sbjct: 61  GIEVVRGIKPDQKFIQVVYEQLIEIMGANNTPLHKQ-SHTVTVVLMAGLQGAGKTTAAAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  + + G KV++ A D +R AAIDQL +   +   +       S    +A    ++A 
Sbjct: 120 LALYLKNQGEKVLMVAADVYRPAAIDQLFVLGKQIDVEVFTLNPESIPEDIAAAGLQKAI 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D LI+DTAGRL  ++ +M    +M+R+   ++   P+ +L V+D+  GQ A     
Sbjct: 180 REGFDYLIVDTAGRLQIDTAMMQ---EMVRIRSAVN---PNEILLVVDSMIGQEAAELTR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G TG ++TK+DG ARGG  + I      P+ F+G GE +  L+PF  +  ++ I
Sbjct: 234 AFHEQIGITGAVLTKLDGDARGGAALSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|194333840|ref|YP_002015700.1| signal recognition particle protein [Prosthecochloris aestuarii DSM
           271]
 gi|194311658|gb|ACF46053.1| signal recognition particle protein [Prosthecochloris aestuarii DSM
           271]
          Length = 449

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/268 (33%), Positives = 141/268 (52%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEEL----LTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +K VE++    L ++  K VS  Q ++  VS+ + +++   +KP N   
Sbjct: 38  LLGADVNYKVTKKFVEDVREKALGEQVVKSVSPAQMIVKIVSDELTELMGGENKPLNLAT 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +  P VI+V G+ G GKTT   KL+K++   G   +L A D +R AAI QLK   D+   
Sbjct: 98  NKLPAVIMVAGLQGSGKTTFCAKLAKRLKKNGKHPLLVAADVYRPAAIAQLKTMGDQVDV 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V S    DA   A +   +A+    DV+I+DTAGRL  +  +MA    + + L     
Sbjct: 158 P-VFSIDAQDALKAALDGVDEARKIGCDVVIVDTAGRLQVDEGMMAEAESLKKQL----- 211

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            +P  +L V+DA  GQ A+   ++F+      G+++TK+DG ARGG  + I      P+ 
Sbjct: 212 -SPDEILFVVDAMIGQEAVNTAKVFNERLDFDGVVLTKLDGDARGGAALSIKHVVDKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+ VGE ++DL+ F     +  I G  D
Sbjct: 271 FMSVGEKVDDLDLFYPDRMAQRILGMGD 298


>gi|29376252|ref|NP_815406.1| signal recognition particle protein [Enterococcus faecalis V583]
 gi|227518889|ref|ZP_03948938.1| signal recognition particle protein [Enterococcus faecalis TX0104]
 gi|256762629|ref|ZP_05503209.1| signal recognition particle protein [Enterococcus faecalis T3]
 gi|256961798|ref|ZP_05565969.1| signal recognition particle protein [Enterococcus faecalis Merz96]
 gi|256964995|ref|ZP_05569166.1| signal recognition particle protein [Enterococcus faecalis
           HIP11704]
 gi|257419425|ref|ZP_05596419.1| signal recognition particle protein [Enterococcus faecalis T11]
 gi|293382861|ref|ZP_06628779.1| signal recognition particle protein [Enterococcus faecalis R712]
 gi|293389652|ref|ZP_06634107.1| signal recognition particle protein [Enterococcus faecalis S613]
 gi|307273091|ref|ZP_07554337.1| signal recognition particle protein [Enterococcus faecalis TX0855]
 gi|312907668|ref|ZP_07766659.1| signal recognition particle protein [Enterococcus faecalis DAPTO
           512]
 gi|312910285|ref|ZP_07769132.1| signal recognition particle protein [Enterococcus faecalis DAPTO
           516]
 gi|29343715|gb|AAO81476.1| signal recognition particle protein [Enterococcus faecalis V583]
 gi|227073680|gb|EEI11643.1| signal recognition particle protein [Enterococcus faecalis TX0104]
 gi|256683880|gb|EEU23575.1| signal recognition particle protein [Enterococcus faecalis T3]
 gi|256952294|gb|EEU68926.1| signal recognition particle protein [Enterococcus faecalis Merz96]
 gi|256955491|gb|EEU72123.1| signal recognition particle protein [Enterococcus faecalis
           HIP11704]
 gi|257161253|gb|EEU91213.1| signal recognition particle protein [Enterococcus faecalis T11]
 gi|291079526|gb|EFE16890.1| signal recognition particle protein [Enterococcus faecalis R712]
 gi|291081045|gb|EFE18008.1| signal recognition particle protein [Enterococcus faecalis S613]
 gi|306510076|gb|EFM79100.1| signal recognition particle protein [Enterococcus faecalis TX0855]
 gi|310626696|gb|EFQ09979.1| signal recognition particle protein [Enterococcus faecalis DAPTO
           512]
 gi|311289558|gb|EFQ68114.1| signal recognition particle protein [Enterococcus faecalis DAPTO
           516]
 gi|315576091|gb|EFU88282.1| signal recognition particle protein [Enterococcus faecalis TX0309B]
 gi|315580665|gb|EFU92856.1| signal recognition particle protein [Enterococcus faecalis TX0309A]
 gi|327535264|gb|AEA94098.1| signal recognition particle protein [Enterococcus faecalis OG1RF]
          Length = 472

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 23/309 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +  V+E + ++   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129
             +V       Q+++  V E + K L   S+    + S + P VI++ G+ G GKTT  G
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLG--SETVELNKSPKIPTVIMMTGLQGAGKTTFTG 119

Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAF 186
           KL+K  M     + +L AGD +R AAIDQLK+   +   +    ++G+DA    +  +  
Sbjct: 120 KLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGL 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+ KK D ++IDTAGRLH +  LM  + K I+ L       P+ +L V+DA TGQ+A+
Sbjct: 178 ALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKEL-----ADPNEILLVVDAMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     
Sbjct: 232 NVADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRM 291

Query: 307 SAVITGCLD 315
           S+ I G  D
Sbjct: 292 SSRILGMGD 300


>gi|77359889|ref|YP_339464.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874800|emb|CAI86021.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 459

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 158/307 (51%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L + + +I    RL ++ +++ L ++    + +D+ + V +  V+++  K  A
Sbjct: 2   FENLQERLGKTLKNISGRGRLTEENIKDTLREVRMAFLEADVALPVVRDFVKQV--KERA 59

Query: 77  KDVSVQRVLYD-------VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L         V E + K +   ++  + + +  P V+++ G+ G GKTT + 
Sbjct: 60  VGVEVTKSLSPGQVFVKIVREELEKAMGEANEELSLN-AQPPAVVMMAGLQGAGKTTSVA 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + +   K V++ + D +R AAI QL+  A     DF  S+I      +A  A   
Sbjct: 119 KLAKFLKERKKKSVLVVSADVYRPAAIKQLETLAAEVGVDFFPSDISQKPVDIATAAISH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K +DV+++DTAGRLH +S +M  I  + + +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFIDVVLVDTAGRLHVDSDMMDEIKNLHKAIN------PIETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK DG ARGG  + I      P+ F+GVGE I+ LEPF     ++
Sbjct: 233 AKAFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERIDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|323341682|ref|ZP_08081915.1| signal recognition particle protein [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464107|gb|EFY09300.1| signal recognition particle protein [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 431

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 152/296 (51%), Gaps = 29/296 (9%)

Query: 27  KLKE-GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSV 81
           KL E  ITD +S  R+           L+ +D+ + V  +++E    E L  +  +DV  
Sbjct: 22  KLSEKNITDALSEIRIS----------LLEADVSLDVINELLEHTRSEALGMKVTRDVEP 71

Query: 82  QRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
            ++     ++++  L+ +   +    DF+ +P ++++VG+ G GKTT I K++ K++  G
Sbjct: 72  SQMFV---KIVNDKLIEILGEEKSELDFNQKPGILMMVGLQGSGKTTTIAKIANKLNKEG 128

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AAI+QLKI   +   +    E  S    +   A   A  K  D+++I
Sbjct: 129 KKVLLVAADLARPAAIEQLKILGTQIGVEVFAQE-NSTPVEVVKNAL--AHGKDFDLILI 185

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL  +  LM  +  +  + K      P  +L  +DA +GQ+ +     F      T
Sbjct: 186 DTAGRLQIDDALMQQLVDIQALTK------PDEILLSVDAMSGQDVIHVANGFKEKLNIT 239

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GL+ TK DG +RGG ++ +    ++PV F+GVGEGI++L+ F     ++ I G  D
Sbjct: 240 GLVATKFDGDSRGGSILSVRYMTQVPVKFVGVGEGIDELDEFYPDRTASRILGMGD 295


>gi|225850967|ref|YP_002731201.1| signal recognition particle protein [Persephonella marina EX-H1]
 gi|225645352|gb|ACO03538.1| signal recognition particle protein [Persephonella marina EX-H1]
          Length = 442

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 156/311 (50%), Gaps = 30/311 (9%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLT 72
           LT+ F+    KLK         +RLD+  V E L+D+   LI +D+ + V +  +++L  
Sbjct: 5   LTERFSGIVEKLK-------RVKRLDEKTVEEALKDIRRALIEADVNIEVIKSFLDDLKQ 57

Query: 73  KRYAKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K   ++V        +V +++YD    I     PL +         P VI++VG+ G GK
Sbjct: 58  KLVGQEVIKGLNAGETVIKLIYDEVLNILGEEAPLQRS-----EKPPTVIMLVGLQGTGK 112

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL+K +   G KV L + D  R AA  QL   A          E   DA  L  +
Sbjct: 113 TTTAGKLAKWLKSKGYKVGLVSTDVRRPAAGKQLCTLAKTIDVPCFIDEEEKDAVRLTEK 172

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++A+   +  +I+DTAGRLH +  LM    +++ + ++++P     +L V DA  GQ+
Sbjct: 173 VIQKAKEAGLSHIILDTAGRLHIDQELM---DELVHIKEKVNPS---EILYVADAMQGQD 226

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   E FH   G TG+I+TK+DG A+GG  + +     +P+ F+GVGE I D + F   
Sbjct: 227 AISTAEEFHNRVGLTGVILTKLDGDAKGGIALSVRKVIGVPIKFIGVGEKIEDFQQFHPD 286

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 287 RIAQRILGLGD 297


>gi|94987017|ref|YP_594950.1| Signal renition particle GTPase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731266|emb|CAJ54629.1| Signal renition particle GTPase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 504

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 146/283 (51%), Gaps = 17/283 (6%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI---HKM 95
           +D +R+ L ++   L+ +D+   V +K +E +  K   +  ++++ L    + I   H+ 
Sbjct: 24  EDNIRDGLREVRLALLEADVNFNVVKKFIEHVKEKVVGQ--AIEKHLTPAQQFIKVFHEE 81

Query: 96  LMPL--SKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           L+ L   K    D +H P  VI++VG+ G GKTT  GKL+  +   GL+  L   D +R 
Sbjct: 82  LVNLLGGKSTKLDVTHFPLSVIMLVGLQGSGKTTSTGKLASLLQSQGLRPYLVPVDIYRP 141

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL+  A + +     S        +   A  +A+ K+  V+++DTAGRLH +  LM
Sbjct: 142 AAIEQLQTLATQLNIPCFASNAAMKPLDIINAALHEAKEKEYTVVLLDTAGRLHIDEPLM 201

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +  +     +L  H P  +L V DA TGQ+ +   E F+     TG I+TKMDG ARG
Sbjct: 202 QELTDI-----KLVAH-PQEILFVADAMTGQDVVTVAEEFNKKLSLTGAILTKMDGDARG 255

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + I  +  +PV ++G GE ++D E F     +  I G  D
Sbjct: 256 GAALSICSSTGVPVKYVGTGEKLSDFEVFHPDRIAGRILGMGD 298


>gi|113955128|ref|YP_729980.1| signal recognition particle protein [Synechococcus sp. CC9311]
 gi|113882479|gb|ABI47437.1| signal recognition particle protein [Synechococcus sp. CC9311]
          Length = 493

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 143/287 (49%), Gaps = 13/287 (4%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--EL 91
           D IS   ++ G  +E+   L+ +D+ + V +  V E+  K    +V V+ V  D    ++
Sbjct: 20  DTISDTNVE-GALKEVRRALLEADVSLPVVKDFVSEVREKAVGAEV-VRGVTPDQKFIQV 77

Query: 92  IHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +H+ L+ +    N   +     P V+L+ G+ G GKTT   KL   + D G K ++   D
Sbjct: 78  VHEQLVDVMGGGNAPLAQADQAPTVVLMAGLQGAGKTTATAKLGLHLKDQGRKALMVGAD 137

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +R AAI+QLK    +   D     I +    +A     +A+ +  D L++DTAGRL  +
Sbjct: 138 VYRPAAIEQLKTLGGQIGVDVFSLGIEAKPEDIAAAGLAKAKEEGYDTLLVDTAGRLQID 197

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           S +M    +M+R+   +    P  VL V+D+  GQ A      FH   G TG ++TK+DG
Sbjct: 198 SEMME---EMVRIRSAVQ---PDEVLLVVDSMIGQEAAELTRAFHDQVGITGAVLTKLDG 251

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +RGG  + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 252 DSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298


>gi|78485342|ref|YP_391267.1| signal recognition particle protein [Thiomicrospira crunogena
           XCL-2]
 gi|78363628|gb|ABB41593.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thiomicrospira crunogena XCL-2]
          Length = 459

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 159/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +    I    RL +  +++ L D+   L+ +D+ + V +  ++++  +   
Sbjct: 2   FDNLSDRLAKSFKTITGQGRLTESNIKDALRDVRRALLEADVALPVVKSFIDKVQERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V E + +++   ++P N++    P +I+V G+ G GKTT +GKL
Sbjct: 62  QEVSTSLNPGQAFIKIVREQLTEIMGQEAEPLNFNVEP-PAIIMVAGLQGAGKTTSVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KVM+ + D +R AAI QL+  A++    F  S    D   +A +A  +A+
Sbjct: 121 ARWLKEREKKKVMVVSADVYRPAAIKQLETLAEQVDVSFYPSTADEDPVDIAKKAHAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VDVLI+DTAGRLH +  +M  + ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 KQFVDVLILDTAGRLHVDEDMMQEVQRLHTAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ F+G GE    LE F     +  I
Sbjct: 235 AFNDALPLTGVILTKTDGDARGGAALSIREITGKPIKFIGAGEKTEALESFHPDRMAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|119386585|ref|YP_917640.1| signal recognition particle protein [Paracoccus denitrificans
           PD1222]
 gi|119377180|gb|ABL71944.1| signal recognition particle subunit FFH/SRP54 (srp54) [Paracoccus
           denitrificans PD1222]
          Length = 498

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/256 (34%), Positives = 136/256 (53%), Gaps = 10/256 (3%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           AV QK     +TK       V ++++D  ELI K+L     P      + P  IL+VG+ 
Sbjct: 54  AVTQKATGAAVTKSITPGQQVVKIVHD--ELI-KVLQGEGAPDALRIDNPPAPILMVGLQ 110

Query: 121 GVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT   KL+K++ D   K V++A+ DT R AA++QL I   +   D +    G +A 
Sbjct: 111 GSGKTTTTAKLAKRLKDREKKRVLMASLDTNRPAAMEQLAILGQQIGVDTLPIVPGENAV 170

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +A  A +QA     DV ++DTAGRLH + +LM  + + +R     D  +P   L V+D 
Sbjct: 171 QIAKRAKQQATLGGYDVYMLDTAGRLHIDEVLMDEV-QAVR-----DVASPRETLLVVDG 224

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ+A+     F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE
Sbjct: 225 LTGQDAVNVAAEFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALE 284

Query: 300 PFVAKDFSAVITGCLD 315
            F A+  +  I G  D
Sbjct: 285 AFDAQRIAGRILGMGD 300


>gi|308187876|ref|YP_003932007.1| Signal recognition 54 kDa protein (SRP54) [Pantoea vagans C9-1]
 gi|308058386|gb|ADO10558.1| Signal recognition 54 kDa protein (SRP54) [Pantoea vagans C9-1]
          Length = 453

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 158/306 (51%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL ++ ++E L ++   L+ +D+ + V +  +  +      
Sbjct: 2   FDNLTDRLSQTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVG 61

Query: 77  KDVSVQRVLYDVSELI----HKMLMPLSKPFN-WDFSHRPH-VILVVGVNGVGKTTVIGK 130
            DV+  + L    E I    ++++  +    N  D + +P  V+L+ G+ G GKTT + K
Sbjct: 62  HDVN--KSLTPGQEFIKIVRNELVAAMGAENNALDLAAQPPAVVLMAGLQGAGKTTSVAK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A +   DF  S++      +   A ++A
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSDLSQKPVDIVNNALREA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    
Sbjct: 180 RLKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG ARGG  + I      P+ F+GVGE    LEPF     ++ 
Sbjct: 234 KAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|284162145|ref|YP_003400768.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Archaeoglobus profundus DSM 5631]
 gi|284012142|gb|ADB58095.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Archaeoglobus profundus DSM 5631]
          Length = 435

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 149/305 (48%), Gaps = 38/305 (12%)

Query: 28  LKEGITDIISSRRLDDGVREEL----EDLLIRSDIGV-------------AVAQKIVEEL 70
           LKE +  I  S  +D  + EE+    +  LI++D+ V             A++++++E L
Sbjct: 6   LKEAVRKITRSATVDKALVEEIVKDIQRALIKADVNVRHVKEISDAIKKRALSEEVLEGL 65

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             + +   +  + +L  + E +    +PL K            I++VG+ G GKTT   K
Sbjct: 66  NPREHIIKIVYEELLKGIGEGLE---IPLKK----------SKIMLVGLQGSGKTTTTAK 112

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K   D GL+  +   DT+R AA DQLK  A+     F       DA  +   A K+  
Sbjct: 113 LAKYFKDKGLRTAVVCADTWRPAAYDQLKQLAENYGIAFYGERESKDAVKIVENALKKL- 171

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  D++IIDTAGR   +++    I +MI + K  +P      L VLDA  GQ A +Q +
Sbjct: 172 -KDYDMIIIDTAGR---HALEKELIDEMIEIAKVANPDYK---LLVLDAAIGQLASKQAK 224

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G  G+I+TK DGTA+GGG +       IP+ F+G GE + D E F    F + +
Sbjct: 225 AFHEAIGIDGIIITKFDGTAKGGGALSAAREIGIPIAFIGTGEKVEDFERFDPAGFVSRL 284

Query: 311 TGCLD 315
            G  D
Sbjct: 285 LGMGD 289


>gi|260767210|ref|ZP_05876152.1| signal recognition particle subunit Ffh SRP54 [Vibrio furnissii CIP
           102972]
 gi|260617818|gb|EEX42995.1| signal recognition particle subunit Ffh SRP54 [Vibrio furnissii CIP
           102972]
 gi|315181159|gb|ADT88073.1| signal recognition particle protein [Vibrio furnissii NCTC 11218]
          Length = 459

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 153/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D ++E L ++   L+ +D+ + V ++ V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVSRV--KEKA 59

Query: 77  KDVSVQRVLYDVSELIH------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             V V + L    E I       + +M  S       +  P VIL+ G+ G GKTT +GK
Sbjct: 60  VGVEVSKSLTPGQEFIKIVRGELEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK + +   K V++ + D +R AAI QL+  A+    DF  S        +A  A   A
Sbjct: 120 LSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLDVDFFPSSPDQKPIDIANAAIDHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVLI+DTAGRL  +  +M  I  + + +       P   L V+DA TGQ+A    
Sbjct: 180 KKKFFDVLIVDTAGRLAIDEQMMGEIQDLHKAIN------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRYITGKPIKFLGVGEKTDALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|299117528|emb|CBN75372.1| SRP54, GTPase subunit of the signal recognition particle (Partial)
           [Ectocarpus siliculosus]
          Length = 507

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 10/236 (4%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           S+Q+ + D  EL   ML P + P+      R +V++ VG+ G GKTT I K +      G
Sbjct: 84  SIQKAVVD--ELTG-MLDPKTAPYKMR-KGRSNVVMFVGLQGAGKTTTIAKFAHYWQRKG 139

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV +   DTFR+ A DQLK  A +    F  S   +D   +A E  +Q + +K +V+I+
Sbjct: 140 WKVAMVCADTFRAGAFDQLKQNATKLRCPFYGSYSEADPVRIADEGVQQFKQEKYEVIIV 199

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DT+GR      L   + ++   ++      P +   ++DAT GQ    Q + FH      
Sbjct: 200 DTSGRHKQEDALFDEMKEIQEAVQ------PDNTTLIMDATQGQAVFDQAKAFHEAVAVG 253

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +I+TK+DG A+GGG +  V     P+ FLG GE  +DLE F A+ F + + G  D
Sbjct: 254 SVIITKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEAFDAQSFVSRLLGFGD 309


>gi|255020743|ref|ZP_05292802.1| Signal recognition particle, subunit Ffh SRP54 [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969805|gb|EET27308.1| Signal recognition particle, subunit Ffh SRP54 [Acidithiobacillus
           caldus ATCC 51756]
          Length = 458

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 158/305 (51%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + KL +   ++    RL +D +R+ L D+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FDNLTQKLSQSFRNLRGQGRLSEDNIRDALRDVRMALLEADVALPVVKDFIQAVRERALG 61

Query: 77  KDVSVQRVLYDVS-ELIHKMLMPLSKPFN--WDFSHRPH-VILVVGVNGVGKTTVIGKLS 132
           ++V+       V  +++H  L+ L    N   D   RP  VIL+ G+ G GKTT   KL+
Sbjct: 62  EEVTRSLTPGQVFIKIVHDELVALMGATNDRLDLQVRPPAVILLAGLQGSGKTTTAAKLA 121

Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
             +++   K V+L + D +R AA+DQL+        +   S+       +A +A  +AQ 
Sbjct: 122 LWLTEREKKRVLLVSTDVYRPAAMDQLRNLGRDIGVEVFPSDPSQAPLTIARDALAEAQR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +DVLI+DTAGRLH +  +M     +  V++      P  +L V+DA TGQ+A+   + 
Sbjct: 182 KVMDVLIVDTAGRLHVDEEMMREAKDLAAVVQ------PAELLFVVDAMTGQDAVNTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDFSAVI 310
           F A    TG+I+TK DG ARGG  + I      P+ F+GVGE +   LEPF     ++ I
Sbjct: 236 FDAALPLTGVILTKADGDARGGAALSIRAVTGKPIKFIGVGEKVRKGLEPFHPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|121718228|ref|XP_001276141.1| signal recognition particle protein SRP54 [Aspergillus clavatus
           NRRL 1]
 gi|119404339|gb|EAW14715.1| signal recognition particle protein SRP54 [Aspergillus clavatus
           NRRL 1]
          Length = 524

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 145/301 (48%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVNDLTRSNNLDEKAFDDMIKEICAALLSADVNVRLVQTLRKSIKSSVNFSSLPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  EL+  ++ P ++PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-ALVNPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ 
Sbjct: 125 YQTRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   F A
Sbjct: 185 EIIIVDTSGRHKQEEDLFTEMTQIQNAV------TPDQTILVLDSTIGQAAEAQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHLMDLERFEPKAFVQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|323489558|ref|ZP_08094785.1| signal recognition particle-like (SRP) component [Planococcus
           donghaensis MPA1U2]
 gi|323396689|gb|EGA89508.1| signal recognition particle-like (SRP) component [Planococcus
           donghaensis MPA1U2]
          Length = 452

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 162/305 (53%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+  +T I    ++++  V+E + ++   LI +D+ + V ++ V+++  +   
Sbjct: 3   FEGLSERLQGTMTKIKGKGKVNEADVKEMMREVRFALIEADVNLKVVKEFVKKISERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V + + +++    +   +  + +P VI++VG+ G GKTT  GKL
Sbjct: 63  QDVMDSLTPGQQVVKIVKDELTELMGGEERKIEFS-TKQPTVIMMVGLQGAGKTTTSGKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAI QL+    + S              +A +A + A+
Sbjct: 122 ANLLRRKHNRKPLLVAADVYRPAAIQQLETIGKQLSLPVFSKGTDMSPVEIARQAIEHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D +IIDTAGRLH +  LM  + K IR LK      P  +  V+D+ TGQ+A+   +
Sbjct: 182 AEHLDTVIIDTAGRLHVDEALMQEL-KDIRALKE-----PDEIFLVVDSMTGQDAVNVAQ 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++TK+DG  RGG  + I    + P+ F+G+GE ++ LE F  +  ++ I
Sbjct: 236 NFDEAIGITGVVLTKLDGDTRGGAALSIRSVTQKPIKFVGMGEKMDALEAFHPERMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|332799152|ref|YP_004460651.1| signal recognition particle protein [Tepidanaerobacter sp. Re1]
 gi|332696887|gb|AEE91344.1| signal recognition particle protein [Tepidanaerobacter sp. Re1]
          Length = 445

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 145/269 (53%), Gaps = 16/269 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V + ++ ++  +   ++V       Q+V+  V+E +  ++   S     DF
Sbjct: 39  LLEADVNFKVVKDLISKITERAIGQEVMESLTPAQQVIKIVNEELTSLMG--STQSKVDF 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S    +I++VG+ G GKTT  GKL K +S  G K +L A D +R AAI QLKI  ++   
Sbjct: 97  SKEITIIMLVGLQGSGKTTTAGKLGKLLSKNGKKPLLVAADIYRPAAITQLKIVGEKVGL 156

Query: 168 D-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             F   +   D   ++  +   A+    DV+IIDTAGRLH +  LM    +++ +   +D
Sbjct: 157 PVFTMGQ--QDPVDISKASVDYAKKHNHDVVIIDTAGRLHVDDDLM---NELVNISHAVD 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P     +L V+D+ TGQ+A+   E F+     TGLI+TK+DG +RGG  + +      P+
Sbjct: 212 PS---EILLVVDSMTGQDAVNVAEEFNNRLQLTGLILTKLDGDSRGGAALSVKAVTGCPI 268

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            ++G+GE ++DLE F  +  ++ I G  D
Sbjct: 269 KYVGMGEKLDDLEIFHPERMASRILGMGD 297


>gi|260941516|ref|XP_002614924.1| hypothetical protein CLUG_04939 [Clavispora lusitaniae ATCC 42720]
 gi|238851347|gb|EEQ40811.1| hypothetical protein CLUG_04939 [Clavispora lusitaniae ATCC 42720]
          Length = 569

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 110/204 (53%), Gaps = 6/204 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           HVI+ VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A +++  F  
Sbjct: 140 HVIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKSNIPFYG 199

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S + +D   +AYE  K+ +  K D++I+DT+GR      L     +M+++ + +    P 
Sbjct: 200 SYLETDPVKVAYEGVKKFKEDKFDIIIVDTSGRHKQEQSL---FNEMVQISEAVQ---PT 253

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             + V+DA+ GQ A  Q + F   +    +I+TKMDG A+GGG I  V   + P+ F+G 
Sbjct: 254 QTIMVMDASIGQAAEGQAKAFKESSNFGSIILTKMDGHAKGGGAISAVAATETPIVFIGT 313

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE + D E F    F + + G  D
Sbjct: 314 GEHVGDFEVFKPSTFISKLLGIGD 337


>gi|154285458|ref|XP_001543524.1| hypothetical protein HCAG_00570 [Ajellomyces capsulatus NAm1]
 gi|150407165|gb|EDN02706.1| hypothetical protein HCAG_00570 [Ajellomyces capsulatus NAm1]
          Length = 353

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 142/292 (48%), Gaps = 22/292 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  +D    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVNDLTRSNNVDAQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPFSSLPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P ++PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKTVFD--QLV-ALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ 
Sbjct: 125 YQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR      L   + ++   ++      P   + VLD T GQ A  Q   F A
Sbjct: 185 DIIIVDTSGRHKQEEDLFVEMTQIQTAIQ------PDQTILVLDGTIGQAAESQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F
Sbjct: 239 AADFGAIIITKTDGNAAGGGAISAVAATHTPIIFLGTGEHMLDLERFSPKPF 290


>gi|310814616|ref|YP_003962580.1| signal recognition particle protein [Ketogulonicigenium vulgare
           Y25]
 gi|308753351|gb|ADO41280.1| signal recognition particle protein [Ketogulonicigenium vulgare
           Y25]
          Length = 501

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/256 (35%), Positives = 135/256 (52%), Gaps = 10/256 (3%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           AV++K   + +TK       V ++++D  ELI  ML   + P        P  IL+VG+ 
Sbjct: 54  AVSKKATGQAVTKSITPGQQVVKIVHD--ELIA-MLAGDTDPGVLKIDSPPAPILMVGLQ 110

Query: 121 GVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT   KL++++ D  G +V+LA+ DT R AA++QL I   +   D +    G D  
Sbjct: 111 GSGKTTTTAKLARRLKDREGKRVLLASLDTNRPAAMEQLAILGTQIGVDTLPIVKGEDPI 170

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A  A  QA     DV I+DTAGRLH ++ L+A    +  V+      +P   L V+D 
Sbjct: 171 AIAKRAKTQASLGGYDVYILDTAGRLHIDAELIAQAAAVRDVV------SPRETLLVVDG 224

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ+A+     F A  G TG+++T+MDG  RGG  + +      P+ F+G+GE  + LE
Sbjct: 225 LTGQDAVNVATEFDAKIGVTGVVLTRMDGDGRGGAALSMRAITGKPIRFIGLGEKTDALE 284

Query: 300 PFVAKDFSAVITGCLD 315
            F A   +  I G  D
Sbjct: 285 VFDANRIAGRILGMGD 300


>gi|283780035|ref|YP_003370790.1| signal recognition particle protein [Pirellula staleyi DSM 6068]
 gi|283438488|gb|ADB16930.1| signal recognition particle protein [Pirellula staleyi DSM 6068]
          Length = 491

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 148/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREEL---EDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S    LK  +  +    RL +  +RE L   E  L+ +D+G+ V +  +  +  K   
Sbjct: 2   FESLQNGLKSALKTLQGKARLTESNMREGLKLVEQSLLEADVGLDVVRDFMGRVTEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q+V+  V + +  +L   ++P         ++ ++ G+ G GKTT  GKL
Sbjct: 62  EKVLLALDPTQQVVGIVRDELITLLGGPAEP-TIKLKAGLNIFMLCGLQGSGKTTTCGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S  +  +   VML A D  R AAI+QL I   +            D   +  EA ++A+ 
Sbjct: 121 STLLMKSKQSVMLCAADLQRPAAIEQLHIIGKQLGVPVFSKPGEQDPVKVCQEAVEEAKK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVE 250
           K V VLI+DTAGRL  +  LMA        LKR+D    P  V  V+D  TGQ+A+R   
Sbjct: 181 KDVTVLILDTAGRLAIDEELMA-------QLKRIDNRVEPDQVFLVVDGMTGQDAVRSAG 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      GLIMTK+DG  RGG L+ +     +P+ F+G GE ++ LEPF  +  +  I
Sbjct: 234 AFNDALELDGLIMTKLDGDTRGGALLSVRQVTGVPIKFIGTGEHLDALEPFRPEGMAGRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGLGD 298


>gi|254974797|ref|ZP_05271269.1| signal recognition particle protein [Clostridium difficile
           QCD-66c26]
 gi|255092185|ref|ZP_05321663.1| signal recognition particle protein [Clostridium difficile CIP
           107932]
 gi|260682859|ref|YP_003214144.1| signal recognition particle protein [Clostridium difficile CD196]
 gi|260209022|emb|CBA62118.1| signal recognition particle protein [Clostridium difficile CD196]
          Length = 452

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P ++++VG+ G GKTT  GKL       G K +L A D +R AAI QL++  ++   
Sbjct: 98  SKPPTILMMVGLQGAGKTTTAGKLGGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    +   +A      A     D++IIDTAGRLH + +LMA +  +   +K    
Sbjct: 158 PVFNMGDKENPVNIAKAGLSHAIKNANDLVIIDTAGRLHIDEVLMAELKSIKSEVK---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             PH +L V+D+ TGQ+A+   E F+   G  G+++TK+DG  RGG  + I    + P+ 
Sbjct: 214 --PHEILLVVDSMTGQDAVNVAESFNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G+GE ++D+EPF     ++ I G  D
Sbjct: 272 FMGMGEKLDDIEPFHPDRMASRILGMGD 299


>gi|313896220|ref|ZP_07829773.1| signal recognition particle protein [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975019|gb|EFR40481.1| signal recognition particle protein [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 458

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 147/280 (52%), Gaps = 14/280 (5%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKM 95
           ++D +RE +   L+ +D+   V +  V+ +  +   ++V     + Q V+  V E + ++
Sbjct: 28  VNDAMRE-VRMALLEADVNFKVVKDFVKRVKERAVGQEVLDTLTAAQAVIKIVDEELTEL 86

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           +       N    + P VI++VG+ G GKTT  GKL+  +   G + +L A D +R AAI
Sbjct: 87  MGGTESRLNIS-PNPPTVIMLVGLQGSGKTTSAGKLALMLKKQGKRPLLVADDIYRPAAI 145

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            QL++  ++  A  V S+   DA A+A  +   + A   DV+IIDTAGRL  +  LM  +
Sbjct: 146 KQLEVIGEKVGAP-VFSQGQEDAVAIARASIAYSAAHANDVVIIDTAGRLQIDETLMQEL 204

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +   ++      PH +L V+DA TGQ A+     F A  G  G++MTK+DG ARGG  
Sbjct: 205 RDIKAAVQ------PHEILLVVDAMTGQEAVNVAAAFDASLGLDGIVMTKLDGDARGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      PV F+G+GE ++ LE F     ++ I G  D
Sbjct: 259 LSIKAVTGRPVKFVGMGEKLDPLEVFHPDRMASRILGMGD 298


>gi|255313924|ref|ZP_05355507.1| signal recognition particle protein [Clostridium difficile
           QCD-76w55]
 gi|255516603|ref|ZP_05384279.1| signal recognition particle protein [Clostridium difficile
           QCD-97b34]
 gi|255649703|ref|ZP_05396605.1| signal recognition particle protein [Clostridium difficile
           QCD-37x79]
 gi|260686457|ref|YP_003217590.1| signal recognition particle protein [Clostridium difficile R20291]
 gi|260212473|emb|CBE03380.1| signal recognition particle protein [Clostridium difficile R20291]
          Length = 450

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P ++++VG+ G GKTT  GKL       G K +L A D +R AAI QL++  ++   
Sbjct: 98  SKPPTILMMVGLQGAGKTTTAGKLGGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    +   +A      A     D++IIDTAGRLH + +LMA +  +   +K    
Sbjct: 158 PVFNMGDKENPVNIAKAGLSHAIKNANDLVIIDTAGRLHIDEVLMAELKSIKSEVK---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             PH +L V+D+ TGQ+A+   E F+   G  G+++TK+DG  RGG  + I    + P+ 
Sbjct: 214 --PHEILLVVDSMTGQDAVNVAESFNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G+GE ++D+EPF     ++ I G  D
Sbjct: 272 FMGMGEKLDDIEPFHPDRMASRILGMGD 299


>gi|70984902|ref|XP_747957.1| signal recognition particle protein SRP54 [Aspergillus fumigatus
           Af293]
 gi|66845585|gb|EAL85919.1| signal recognition particle protein SRP54 [Aspergillus fumigatus
           Af293]
 gi|159126118|gb|EDP51234.1| signal recognition particle protein SRP54 [Aspergillus fumigatus
           A1163]
          Length = 522

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 145/301 (48%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVNDLTRSSNLDEKAFDDMLKEICAALLSADVNVRLVQTLRKSIKSSVNFSSLPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  EL+  ++ P ++PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-ALVDPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ 
Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +V+I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   F A
Sbjct: 185 EVIIVDTSGRHKQEEELFTEMTQIQNAV------TPDQTILVLDSTIGQAAEAQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TANFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHLMDLERFEPKAFVQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|3334344|sp|O42816|SRP54_CANAL RecName: Full=Signal recognition particle 54 kDa protein homolog
 gi|2739331|emb|CAA10999.1| Srp54 protein [Candida albicans]
          Length = 556

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 41/305 (13%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS-----------VQRVLYD 87
           DD +++ ++D+   L+ SD+ V +  K+   +  K    +VS           +Q++++D
Sbjct: 22  DDEIQQMIKDICSALLESDVNVKLVAKLRGNIKNKIDESNVSKETSAMNKRKKLQKIIFD 81

Query: 88  -VSELIHKMLMPLSKPFNWDFSHR-------------PHVILVVGVNGVGKTTVIGKLSK 133
            +  L+   + P  KP     S +              HVI+ VG+ G GKTT   KL+ 
Sbjct: 82  ELCALVDSNVEP-PKPKKLSTSTKTINGKKVRLSKESSHVIMFVGLQGAGKTTSCTKLAV 140

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G KV L   DTFR+ A DQLK  A + +  +  S +  D   +A+E  ++ + +K
Sbjct: 141 YYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSYLEPDPVKIAFEGVQKFKQEK 200

Query: 194 VDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            D++I+DT+GR      L   M  IG+ ++         P   + V+D + GQ A  Q  
Sbjct: 201 FDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ---------PTQTIMVMDGSIGQAAESQAR 251

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F   +    +I+TKMDG A+GGG I  V   K P+ F+G GE + DLE F    F + +
Sbjct: 252 AFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHVGDLEIFKPTTFISKL 311

Query: 311 TGCLD 315
            G  D
Sbjct: 312 LGIGD 316


>gi|34556966|ref|NP_906781.1| signal recognition particle protein [Wolinella succinogenes DSM
           1740]
 gi|34482681|emb|CAE09681.1| SIGNAL RECOGNITION PARTICLE PROTEIN [Wolinella succinogenes]
          Length = 446

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 134/259 (51%), Gaps = 12/259 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           EEL+  L+++D+     + +++ +  +  AK +  +  L   S L   +L  L    +  
Sbjct: 30  EELKKALLKADVHYKAVKDLLKTVENETKAKGIGKESFL---SALRQGLLEILQTSGSQG 86

Query: 107 F---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           F   S  P V+L+ G+ G GKTT   KL+  +   G KV++AA D  R AA++QLK  + 
Sbjct: 87  FVFASKPPTVVLMAGLQGSGKTTTTAKLASFLKTKGKKVLMAACDLQRLAAVEQLKQLSA 146

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +   D    E  ++   +A  A  +A     DVL++DTAGRL  +  LM  +  +   + 
Sbjct: 147 QIEVDLYHEEESANPVQIAKNALHRANEGLYDVLLVDTAGRLAIDEALMQELKSVKEAIH 206

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 PH V  V D+ +GQ+ +R  E FH     +G+I++K DG ++GG  + I     
Sbjct: 207 ------PHEVFYVADSLSGQDGVRSAERFHQEMALSGVILSKFDGDSKGGVALSIAYQIG 260

Query: 284 IPVYFLGVGEGINDLEPFV 302
           IP+ F+G GE I DL+PF+
Sbjct: 261 IPLRFIGSGEKIPDLDPFL 279


>gi|60623872|ref|NP_377232.2| signal recognition particle protein [Sulfolobus tokodaii str. 7]
 gi|28380160|sp|Q971S9|SRP54_SULTO RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
          Length = 445

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 152/305 (49%), Gaps = 31/305 (10%)

Query: 28  LKEGITDIISSRRLDDGVRE---ELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVS 80
           LK+ +   + S   D  V +   EL+  LI+SD+ V +     QKI + L  ++     +
Sbjct: 5   LKDAVRKFLGSSNYDKAVNDFIKELQISLIKSDVNVKLVSNLTQKIKDRL--EKEKPPTA 62

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKK 134
           ++R  + +S +  +    LSK F  D +        P+VI++VGV G GKTT  GKL+  
Sbjct: 63  IERREWFISIVYDE----LSKLFGGDINPEVMPKKIPYVIMLVGVQGSGKTTTAGKLALF 118

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G KV L A D +R AA DQL     + +         +DA  +A    ++  ++K 
Sbjct: 119 YKKKGYKVGLVAADVYRPAAYDQLVQIGKQINVPVYGEPNNTDAVGIAKRGVEKFLSEKY 178

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH----APHSVLQVLDATTGQNALRQVE 250
           D++I+DTAGR         G G+ +++L+ +        P  V+ V+DA+ GQ A     
Sbjct: 179 DIIIVDTAGR--------HGYGEEVKLLEEMKNMYSEIKPDEVILVIDASIGQKAYDLAS 230

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH  +    +I+TKMDGTA+GGG +  V      + F+G GE +++LE F  + F + I
Sbjct: 231 RFHQASPIGSIIVTKMDGTAKGGGALSAVAATGAAIKFIGTGEKLDELEVFNPRRFVSRI 290

Query: 311 TGCLD 315
            G  D
Sbjct: 291 LGMGD 295


>gi|68475987|ref|XP_717934.1| hypothetical protein CaO19.3243 [Candida albicans SC5314]
 gi|68476118|ref|XP_717868.1| hypothetical protein CaO19.10753 [Candida albicans SC5314]
 gi|46439602|gb|EAK98918.1| hypothetical protein CaO19.10753 [Candida albicans SC5314]
 gi|46439670|gb|EAK98985.1| hypothetical protein CaO19.3243 [Candida albicans SC5314]
          Length = 556

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 41/305 (13%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS-----------VQRVLYD 87
           DD +++ ++D+   L+ SD+ V +  K+   +  K    +VS           +Q++++D
Sbjct: 22  DDEIQQMIKDICSALLESDVNVKLVAKLRGNIKNKIDESNVSKETSAMNKRKKLQKIIFD 81

Query: 88  -VSELIHKMLMPLSKPFNWDFSHR-------------PHVILVVGVNGVGKTTVIGKLSK 133
            +  L+   + P  KP     S +              HVI+ VG+ G GKTT   KL+ 
Sbjct: 82  ELCALVDSNVEP-PKPKKLSTSTKTINGKKVRLSKESSHVIMFVGLQGAGKTTSCTKLAV 140

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G KV L   DTFR+ A DQLK  A + +  +  S +  D   +A+E  ++ + +K
Sbjct: 141 YYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSYLEPDPVKIAFEGVQKFKQEK 200

Query: 194 VDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            D++I+DT+GR      L   M  IG+ ++         P   + V+D + GQ A  Q  
Sbjct: 201 FDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ---------PTQTIMVMDGSIGQAAESQAR 251

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F   +    +I+TKMDG A+GGG I  V   K P+ F+G GE + DLE F    F + +
Sbjct: 252 AFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHVGDLEIFKPTTFISKL 311

Query: 311 TGCLD 315
            G  D
Sbjct: 312 LGIGD 316


>gi|317049261|ref|YP_004116909.1| signal recognition particle protein [Pantoea sp. At-9b]
 gi|316950878|gb|ADU70353.1| signal recognition particle protein [Pantoea sp. At-9b]
          Length = 453

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 156/309 (50%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ +  +  +   
Sbjct: 2   FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFINRVKERAVG 61

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVILVVGVNGVGKTTVIGK 130
            DV+  + L    E I  +   L +    +       +  P V+L+ G+ G GKTT + K
Sbjct: 62  HDVN--KSLTPGQEFIKIVRNELVEAMGAENNALNLAAQPPAVVLMAGLQGAGKTTSVAK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A +   DF  S++      +   A K+A
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIRQLETLAQQVGVDFCPSDLSQKPVDIVNNALKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + +  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A 
Sbjct: 180 RLQFYDVLLVDTAGRLHVDEAMMDEIKQV---------HAAINPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+I+TK+DG ARGG  + I      P+ F+GVGE    LEPF     
Sbjct: 231 NTAKAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPDRI 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|212695490|ref|ZP_03303618.1| hypothetical protein ANHYDRO_00006 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325846141|ref|ZP_08169235.1| signal recognition particle protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|212677490|gb|EEB37097.1| hypothetical protein ANHYDRO_00006 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325481734|gb|EGC84769.1| signal recognition particle protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 445

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 158/305 (51%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F++ S KL++ +  +     +S + +D+  RE ++  L+ +D+   V +  ++++  +  
Sbjct: 3   FSNLSEKLQDTLGKLTGKGKLSEKDIDNAARE-IKLSLLEADVNYKVVKNFIKKVKERSM 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +       S  PHV+L+VG+ G GKTT  GK
Sbjct: 62  GQDVMESLTPGQTVIKIVNEELTNLMGKENSKLELKGST-PHVVLMVGLQGSGKTTHSGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L +K+   G   +L A D +R AAI+QLK+   +   + V  +   D    A EA + A+
Sbjct: 121 LVRKLKKEGRNPLLVALDVYRPAAIEQLKVVGGQAEVE-VFEKGKQDPVKTANEAKEYAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRL  +  LM  +  + + +K      P  +L V+DA  GQ ++   +
Sbjct: 180 RNNNDVVIMDTAGRLQIDEDLMDELKNIKKAVK------PDEILLVVDAMVGQESVNVAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + I      P+ F+G GE ++DLE F     ++ I
Sbjct: 234 TFDDYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGTGEKLDDLEAFHPDRMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|227497506|ref|ZP_03927735.1| signal recognition particle [Actinomyces urogenitalis DSM 15434]
 gi|226833034|gb|EEH65417.1| signal recognition particle [Actinomyces urogenitalis DSM 15434]
          Length = 498

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 145/281 (51%), Gaps = 22/281 (7%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-------VQRVLYDVSELIHKMLMPLS 100
           E+   L+ +D+ + V +     +  K  AK+ +        Q+V+  V++ + ++L   +
Sbjct: 33  EIRRALLEADVALPVVRSFTSAVREK--AKEAARSQALNPAQQVIKIVNDELIEVLGGAT 90

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           +  NW     P VI++ G+ G GKTT+ GKL   +   G +V+L A D  R  A+ QL +
Sbjct: 91  RELNW-ADRGPTVIMLAGLQGAGKTTLAGKLGHWLRGEGKRVLLVASDLQRPNAVTQLSV 149

Query: 161 WADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            A+R   D    E G+   D  A+A    +QA+    DV+++DTAGRL  ++ +M    +
Sbjct: 150 VAERAGVDVWAPEPGNGVGDPVAVAASGVEQARTHGYDVVVVDTAGRLGVDAEMM---DQ 206

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            IR+    D   PH +L VLDA  GQ+A+     F    G TG++++K+DG ARGG  + 
Sbjct: 207 AIRIR---DAVHPHEILFVLDAMVGQDAVNTSVAFRDGVGFTGVVLSKLDGDARGGAALS 263

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           +      PV F   GEG+ D E F A   ++ I   LD G+
Sbjct: 264 VRGVTGAPVLFSSTGEGLEDFERFHADRMASRI---LDMGD 301


>gi|241957976|ref|XP_002421707.1| signal recognition particle (SRP) subunit, piutative [Candida
           dubliniensis CD36]
 gi|223645052|emb|CAX39646.1| signal recognition particle (SRP) subunit, piutative [Candida
           dubliniensis CD36]
          Length = 567

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 145/305 (47%), Gaps = 41/305 (13%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS-----------VQRVLYD 87
           DD + + ++D+   L+ SD+ V +  K+   +  K    +VS           +Q++++D
Sbjct: 22  DDEISQMIKDICSALLESDVNVKLVAKLRGNIKNKIEEANVSKETSAMNKRKKLQKIIFD 81

Query: 88  -VSELIHKMLMPLSKPFNWDFSHR-------------PHVILVVGVNGVGKTTVIGKLSK 133
            +  L+   + P  KP     S +              HVI+ VG+ G GKTT   KL+ 
Sbjct: 82  ELCALVDSNVEP-PKPKKLSTSTKTINGKKVRVSKESSHVIMFVGLQGAGKTTSCTKLAV 140

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G KV L   DTFR+ A DQLK  A + +  +  S +  D   +A+E  ++ + +K
Sbjct: 141 YYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSYLEPDPVKIAFEGVQKFKQEK 200

Query: 194 VDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            D++I+DT+GR      L   M  IG+ ++         P   + V+D + GQ A  Q  
Sbjct: 201 FDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ---------PSQTVMVMDGSIGQAAESQAR 251

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F   +    +I+TKMDG A+GGG I  V   K P+ F+G GE + DLE F    F + +
Sbjct: 252 AFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHVGDLEIFKPTTFISKL 311

Query: 311 TGCLD 315
            G  D
Sbjct: 312 LGIGD 316


>gi|227499935|ref|ZP_03930028.1| signal recognition particle protein Ffh [Anaerococcus tetradius
           ATCC 35098]
 gi|227218044|gb|EEI83317.1| signal recognition particle protein Ffh [Anaerococcus tetradius
           ATCC 35098]
          Length = 445

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 154/305 (50%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F   S +L+E +  +     +S + +D  +RE +   L+ +D+   V +  V+ +  +  
Sbjct: 3   FEGLSERLQETLGKLTGKGKLSEKDIDAAMRE-IRLSLLEADVNYKVVKDFVKTIKERSL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +   +   S  PH++++VG+ G GKTT  GK
Sbjct: 62  GQDVMTSLSPGQMVVKIVNEELTCLMGKENSKLDLKGST-PHMVMMVGLQGSGKTTHSGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+       ML A D +R AAI+QLK+       + V  +   D    A EA   A+
Sbjct: 121 LALKLKKENRNPMLTALDIYRPAAIEQLKVVGKNAGVE-VFEKDKQDPVKTAKEAKDYAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A + DV+I+DTAGRL  ++ LM  +  +   +       P  +L V+DA TGQ A+   +
Sbjct: 180 ANRHDVVILDTAGRLQIDTDLMDELKNIKEAVN------PDEILLVVDAMTGQEAVNVAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + I      P+ F+GVGE + DLEPF     +  I
Sbjct: 234 TFDDYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGVGEKLEDLEPFHPDRMANRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|238879597|gb|EEQ43235.1| signal recognition particle 54 kDa protein [Candida albicans WO-1]
          Length = 556

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 41/305 (13%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS-----------VQRVLYD 87
           DD +++ ++D+   L+ SD+ V +  K+   +  K    +VS           +Q++++D
Sbjct: 22  DDEIQQMIKDICSALLESDVNVKLVAKLRGNIKNKIDESNVSKETSAMNKRKKLQKIIFD 81

Query: 88  -VSELIHKMLMPLSKPFNWDFSHR-------------PHVILVVGVNGVGKTTVIGKLSK 133
            +  L+   + P  KP     S +              HVI+ VG+ G GKTT   KL+ 
Sbjct: 82  ELCALVDSNVEP-PKPKKLSTSTKTINGKKVRLSKESSHVIMFVGLQGAGKTTSCTKLAV 140

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G KV L   DTFR+ A DQLK  A + +  +  S +  D   +A+E  ++ + +K
Sbjct: 141 YYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSYLEPDPVKIAFEGVQKFKQEK 200

Query: 194 VDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            D++I+DT+GR      L   M  IG+ ++         P   + V+D + GQ A  Q  
Sbjct: 201 FDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ---------PTQTIMVMDGSIGQAAESQAR 251

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F   +    +I+TKMDG A+GGG I  V   K P+ F+G GE + DLE F    F + +
Sbjct: 252 AFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHVGDLEIFKPTTFISKL 311

Query: 311 TGCLD 315
            G  D
Sbjct: 312 LGIGD 316


>gi|288942105|ref|YP_003444345.1| signal recognition particle protein [Allochromatium vinosum DSM
           180]
 gi|288897477|gb|ADC63313.1| signal recognition particle protein [Allochromatium vinosum DSM
           180]
          Length = 464

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 163/305 (53%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEEL----LT 72
           F +   + +  +T++    RL +D +++ L ++   L+ +D+ + V ++ +E++    L 
Sbjct: 2   FENLQDRFETVLTNLRGQGRLTEDNIKDTLREVRMALLEADVALPVVRQFIEDIREQALG 61

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  +VL   V++ + K++   ++  +   +  P VIL+ G+ G GKTT + KL
Sbjct: 62  EAVTKSLTPGQVLIKIVNDELVKIMGAANERLDL-AAQPPAVILMAGLQGSGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K VM+ + D +R AAI+QL+  A    A+F  S+   D   +A  A + A+
Sbjct: 121 ARWLQEKQKKSVMVVSCDVYRPAAIEQLRTVAGEVGAEFCPSQGDEDPVHIAQRALESAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH ++ +M  I  + + +K      P   L V+D+ TGQ+A    +
Sbjct: 181 KRFKDVLIVDTAGRLHVDAEMMDEIKLIHKAIK------PVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG ARGG  + I      P+ FLG GE    LEPF     ++ I
Sbjct: 235 AFDEALPLTGVILTKTDGDARGGAALSIRQITGKPIKFLGTGERTTALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|212535310|ref|XP_002147811.1| signal recognition particle protein SRP54 [Penicillium marneffei
           ATCC 18224]
 gi|210070210|gb|EEA24300.1| signal recognition particle protein SRP54 [Penicillium marneffei
           ATCC 18224]
          Length = 537

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 144/301 (47%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVNDLTRSNTLDEKAFDDMLKEICSALLSADVNVRLVQNLRKSIKHSVNFSSLPSA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  EL+  ++ P + PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-ALVNPHADPFKPK-KGRVNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D   +A E   Q + ++ 
Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNAIKAKIPYYGSLTQTDPVVVAAEGVAQFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR      L   + ++   ++      P   + VLD+T GQ A  Q   F A
Sbjct: 185 DIIIVDTSGRHKQEEDLFEEMTQIQNAVR------PDQTILVLDSTIGQAAEAQSSAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|242792738|ref|XP_002482016.1| signal recognition particle protein SRP54 [Talaromyces stipitatus
           ATCC 10500]
 gi|218718604|gb|EED18024.1| signal recognition particle protein SRP54 [Talaromyces stipitatus
           ATCC 10500]
          Length = 534

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 146/301 (48%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   ++D+  S  +D    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVSDLTRSNTVDEKAFDDMLKEICSALLSADVNVRLVQSLRKSIKHNVNFSSLPSA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  EL+  ++ P ++PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-ALVNPHAEPFKPK-KGRVNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D   +A E   Q + ++ 
Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNAIKAKIPYYGSLTQTDPVVVAAEGVAQFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR      L   + ++   ++      P   + VLD+T GQ A  Q   F A
Sbjct: 185 DIIIVDTSGRHKQEEDLFEEMTQIQNAVR------PDQTILVLDSTIGQAAEAQSSAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|310822873|ref|YP_003955231.1| signal recognition particle protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395945|gb|ADO73404.1| Signal recognition particle protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 544

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 155/323 (47%), Gaps = 35/323 (10%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEE 69
            +  +TKGF S   +L  G +++         V E L D+   L+ +D+   V +K V  
Sbjct: 1   MLETVTKGFRSAKNRLA-GKSELTPEL-----VDESLRDIRVSLLEADVSFDVVKKFVSR 54

Query: 70  LLTKRYAKDVSVQRVLYDVS-------------ELIHKMLMPLSKPFNWDFSHRPHV--- 113
           +  K   +   VQ  + D S             ++ H  L  L  P +     +P     
Sbjct: 55  VREKAVGE--VVQTTITDKSGQKRKVSPADYFVKVCHDELEALMGPVDTSLKLKPRGQLS 112

Query: 114 -ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            I++VG+ G GKTT  GKL+ ++   G K +L A D +R AA+DQLK+  +R     V  
Sbjct: 113 GIMMVGLQGSGKTTTTGKLANRLLQEGRKPLLVAADIYRPAAVDQLKVLGERLKVP-VYF 171

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E G     LA   +  A+ +K DV++IDTAGRL  +  LMA +  +     + + H P +
Sbjct: 172 EPGVAPPELAVRGYAAAREQKCDVVLIDTAGRLAIDESLMAELESI-----KGNVH-PDN 225

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V DA  GQ+A+R    F       G I+TK+DG ARGG  + I      P+ FLG+G
Sbjct: 226 ILLVCDAMIGQDAVRTAAEFDRRLTLDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMG 285

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E ++ LE F  +  +  I G  D
Sbjct: 286 ESMDKLEEFRPEGLAGRILGFGD 308


>gi|27262412|gb|AAN87487.1| signal recognition particle subunit Ffh/Srp54 [Heliobacillus
           mobilis]
          Length = 300

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 136/262 (51%), Gaps = 18/262 (6%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIHKMLMPL 99
           E+   L+ +D+ + V +  V  +  +   +DV         V +V++D  ELI  M    
Sbjct: 40  EVRMALLAADVNLKVVKDFVARVKERAIGQDVLESLTPGQQVVKVVHD--ELIQLMGGTT 97

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           SK  N   S  P V+++VG+ G GKTT + KL   +   G + +L A D +R AA+ QL+
Sbjct: 98  SK-LNMS-SKPPTVVMLVGLQGAGKTTTVAKLGLYLRKQGRRPLLVACDVYRPAAVKQLQ 155

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +  ++          G     +A  A + A A+  DV+++DTAGRLH N  LM  +  + 
Sbjct: 156 VLGNQLDLPVFSMGTGVSPVDIARGATEYAVAQGRDVILLDTAGRLHINEELMDELKSIK 215

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
             +K      PH ++ V+DA TGQ+A+   + FH   G  G+++TK+DG ARGG  + + 
Sbjct: 216 STVK------PHEIMLVVDAMTGQDAVNVADSFHKQLGLDGVVLTKLDGDARGGAALSVK 269

Query: 280 VTHKIPVYFLGVGEGINDLEPF 301
                P+ F G+GE  + LEPF
Sbjct: 270 AVTGCPIKFAGMGEKPDALEPF 291


>gi|220905067|ref|YP_002480379.1| signal recognition particle protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869366|gb|ACL49701.1| signal recognition particle protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 512

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 141/271 (52%), Gaps = 18/271 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL--SKPFNW 105
           L+ +D+   V +  VE +  K   ++V       Q+V+    +++H  L+ L   +    
Sbjct: 38  LLEADVNFKVVKDFVENVREKCLGQEVLKGVSPAQQVV----KIVHDELVGLLGGETAAL 93

Query: 106 DFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           D   R P VI++VG+ G GKTT  GK++  +    ++  L   D +R AAIDQL + A +
Sbjct: 94  DLQGREPAVIMLVGLQGSGKTTSAGKIANILRKQKMRPYLVPADVYRPAAIDQLTVLAKQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                  S +  D   +A  A ++A+ ++  VL++DTAGRLH +  LM  +  +   ++ 
Sbjct: 154 LDMPCYPSTVDMDPVDIAKAALEEARREQATVLLLDTAGRLHVDEPLMQELEAIKAAVQ- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  +L V DA TGQ+A+   E F+   G TG+++TKMDG ARGG  + I      
Sbjct: 213 -----PQEILFVADAMTGQDAVTVAESFNERLGVTGVVLTKMDGDARGGAALSIRAVTGA 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           PV F+G+GE ++++E F     +  I G  D
Sbjct: 268 PVKFVGMGEKLSEMEVFHPDRIAGRILGMGD 298


>gi|119774025|ref|YP_926765.1| signal recognition particle protein [Shewanella amazonensis SB2B]
 gi|119766525|gb|ABL99095.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           amazonensis SB2B]
          Length = 457

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 153/304 (50%), Gaps = 25/304 (8%)

Query: 30  EGITDIIS---------SRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77
           E +TD +S          R  +D +++ L ++   L+ +D+ + V ++ V  +  +   +
Sbjct: 3   ENLTDRLSRTLKTISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFVNAVKERAVGQ 62

Query: 78  DVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           DV+      Q  +  V   + K +   ++  N   +  P VI++ G+ G GKTT + KLS
Sbjct: 63  DVAKSLTPGQVFVKIVQSELEKAMGEANEALNL-AAQPPAVIMMAGLQGAGKTTSVAKLS 121

Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K +     K V++ + D +R AAI QL+  A     +F  S++      +A  A   A+ 
Sbjct: 122 KFLRTRQKKSVLVVSADVYRPAAIKQLETLAKEVEVEFFPSDVSQKPIDIANAAISHAKL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    + 
Sbjct: 182 KFIDVVILDTAGRLHVDEAMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I 
Sbjct: 236 FNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|159903874|ref|YP_001551218.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9211]
 gi|159889050|gb|ABX09264.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9211]
          Length = 485

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 24/274 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS---------VQRVLYDVSELIHKMLMPLSKPF 103
           L+ +D+ ++V ++ V E+  K    +V          V+ V  ++ E++     PL+   
Sbjct: 38  LLEADVSLSVVKEFVAEVGQKAIGAEVVRGVKPGQKFVEVVKQELVEVMGGENAPLA--- 94

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
             + S +P VIL+ G+ G GKTT   KL+  + D G K ++ A D +R AAI+QL     
Sbjct: 95  --NVSEKPTVILMAGLQGAGKTTATAKLALHLKDQGRKALMVAADVYRPAAIEQLTTLGS 152

Query: 164 RTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           +   D     +GS+     +A    ++A+ +  D L++DTAGRL  +S +M    +M+R+
Sbjct: 153 QIDIDVFS--LGSNLKPEQIAASGLEKARNEGFDTLLVDTAGRLQIDSEMM---DEMVRI 207

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
              ++   P  VL V+D+  GQ A      FH   G TG ++TK+DG +RGG  + I   
Sbjct: 208 RSAVN---PDEVLLVVDSMIGQEAAELTRAFHEKVGITGAVLTKLDGDSRGGAALSIKKI 264

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ F+G GE +  LEPF  +  ++ I G  D
Sbjct: 265 SGKPIKFIGTGEKVEALEPFHPERMASRILGMGD 298


>gi|282882960|ref|ZP_06291564.1| signal recognition particle protein [Peptoniphilus lacrimalis
           315-B]
 gi|281297167|gb|EFA89659.1| signal recognition particle protein [Peptoniphilus lacrimalis
           315-B]
          Length = 445

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 152/308 (49%), Gaps = 25/308 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+  +  +    +L     D    E++  L+ +D+   V +  ++   TK  A
Sbjct: 3   FESLSEKLQNTLNKLTGKGKLTEKDIDAAMREVKLALLEADVNFKVVKDFIKN--TKERA 60

Query: 77  KDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               V       Q+V+  V++ +  ++    +    D+S +P VIL+ G+ G GKTT  G
Sbjct: 61  LGSQVLESLTPGQQVIKIVNDELKNLMG--KEQVKIDYSKKPTVILMCGLQGAGKTTTAG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--DAAALAYEAFK 187
           KL+ KM   G + +L A D +R AAI QL++     S D     +G   D   ++  + +
Sbjct: 119 KLANKMKQEGKRPLLVACDVYRPAAIKQLQVVG--KSVDVPVFTMGDKIDPVDISKASLE 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLIIDTAGRL  +  LM  +  +   L+      P  VL VLD+ TGQ A+ 
Sbjct: 177 HAKKNGNDVLIIDTAGRLQIDEKLMQELKNIYDALE------PSEVLLVLDSMTGQEAVN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+I+TK+DG ARGG  + I     +P+ F+  GE ++++E F     +
Sbjct: 231 VADTFDDTLKLTGVILTKLDGDARGGAALSIRAVTDVPIKFIASGEKMDNIEVFHPDRMA 290

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 291 SRILGMGD 298


>gi|227553504|ref|ZP_03983553.1| signal recognition particle protein [Enterococcus faecalis HH22]
 gi|227177374|gb|EEI58346.1| signal recognition particle protein [Enterococcus faecalis HH22]
          Length = 442

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 117/208 (56%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++ G+ G GKTT  GKL+K  M     + +L AGD +R AAIDQLK+   +   + 
Sbjct: 71  PTVIMMTGLQGAGKTTFTGKLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EV 128

Query: 170 VCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              ++G+DA    +  +    A+ KK D ++IDTAGRLH +  LM  + K I+ L     
Sbjct: 129 PVFDMGTDANPVEIVRQGLALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKEL----- 182

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA TGQ+A+   + F+   G TG+++TKMDG  RGG  + I      P+ 
Sbjct: 183 ADPNEILLVVDAMTGQDAVNVADSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIK 242

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G GE + DLE F     S+ I G  D
Sbjct: 243 FVGSGEKLTDLEIFHPDRMSSRILGMGD 270


>gi|157413847|ref|YP_001484713.1| signal recognition particle protein [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388422|gb|ABV51127.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9215]
          Length = 492

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 149/286 (52%), Gaps = 14/286 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           IS   ++D + + ++  L+ +D+ ++V +  + E+  K   ++V       Q+ +  V++
Sbjct: 22  ISENNINDALNQ-VKRALLDADVSLSVVKDFISEVKEKAIGEEVVRGVNPGQKFIEVVNK 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  ++   + P N +  + P VIL+ G+ G GKTT  GKL   + +   KV+L A D +
Sbjct: 81  ELINIMGNENSPLNEN-KNSPTVILMAGLQGAGKTTATGKLGLYLKEKDKKVLLVAADIY 139

Query: 151 RSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           R AA++QLK    +   + F   E       +A +A   A+    + +IIDTAGRL  + 
Sbjct: 140 RPAAVEQLKTLGSQYDLEVFSAKEKNCKPEVIAKDALNFARENDFNSIIIDTAGRLQIDD 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +M+   +M+R+    +   P  VL V+D+  GQ A    + FH   G +G I+TK+DG 
Sbjct: 200 SMMS---EMVRIK---EVSNPDEVLLVVDSMIGQEAADLTKSFHEKVGISGAILTKLDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + I      P+ F+GVGE I  L+PF  +  ++ I G  D
Sbjct: 254 SRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRILGMGD 299


>gi|56460828|ref|YP_156109.1| Signal recognition particle GTPase [Idiomarina loihiensis L2TR]
 gi|56179838|gb|AAV82560.1| Signal recognition particle GTPase [Idiomarina loihiensis L2TR]
          Length = 454

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 157/306 (51%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + +  I    RL +D ++E L ++   L+ +D+ + V +    K+ E  + 
Sbjct: 2   FENLSERLSQTLHSIGGRGRLTEDNIKETLREVRMALLEADVALPVVKDFIAKVKERAVG 61

Query: 73  KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
               K ++  +V   +  SEL    +   + P   + +  P VIL+ G+ G GKTT +GK
Sbjct: 62  TEVNKSLTPGQVFVKIVQSEL-EAAMGEANAPLQLN-TQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K +++    KVM+ + D +R AAI QL+  A++   +F  S        +A  A  QA
Sbjct: 120 LAKYLTERQKKKVMVVSADVYRPAAIKQLETLAEQVGVEFFPSSTDQKPVDIANAAIAQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +DV+++DTAGRL  +  +M  I ++   +       P   L V+DA TGQ+A    
Sbjct: 180 RKQFIDVVLVDTAGRLAIDEDMMQEIQQLHSAIN------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFSEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFLGVGEKNDALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|116200506|ref|XP_001226065.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88175512|gb|EAQ82980.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 512

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 148/301 (49%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80
           ++   + D+  +  LD    D + + +   L+ +D+ V +  ++ + + +    KD+   
Sbjct: 9   RINAAVNDLTRAPNLDEKTFDSMLKTICSALLEADVNVRLVGQLRKSIRSTVNFKDLPPA 68

Query: 81  ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                 +Q+ +YD  EL+  ++ P ++PF      + +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVYD--ELVS-LVDPHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +  L   DTFR+ A DQLK  A +    +  S   +D   +A E  ++ + ++ 
Sbjct: 125 YQSRGFRACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPTVVAREGVEKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +++I+DT+GR    S L   +  +   +K      P   + VLDA+ GQ A  Q + F  
Sbjct: 185 EIIIVDTSGRHRQESALFQEMTDIQTAIK------PDETIMVLDASIGQQAEAQAKAFKE 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ F+G GE + D E FV + F + + G  
Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATHTPIVFIGTGEHMFDFERFVPRSFISKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|85098637|ref|XP_960643.1| signal recognition particle 54 kDa protein [Neurospora crassa
           OR74A]
 gi|28922154|gb|EAA31407.1| signal recognition particle 54 kDa protein [Neurospora crassa
           OR74A]
 gi|28949956|emb|CAD70717.1| probable signal recognition particle subunit SRP54 [Neurospora
           crassa]
          Length = 511

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 152/301 (50%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80
           ++   ++D+  +  LD    DG+ +E+   L+ +D+ V +  ++ + + +    K++   
Sbjct: 9   RINAAVSDLTRAPNLDEKAFDGMLKEICSALLEADVNVRLVGQLRKSIKSTVNFKELPPA 68

Query: 81  ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                 +Q+ ++D  EL+ +++ P ++PF      + +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-RLVDPHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +V L   DTFR+ A DQLK  A +    +  S   +D   +A +   + + +K 
Sbjct: 125 YQSRGFRVGLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPVVVARDGVDKFKKEKF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +++I+DT+GR      L   +  +   +K      P   + VLDA+ GQ A  Q + F  
Sbjct: 185 EIIIVDTSGRHRQEEALFQEMMDIQTAVK------PDETIMVLDASIGQQAEAQAKAFKE 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ F+G GE + DLE FV  +F + + G  
Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATHTPIVFIGTGEHMLDLERFVPNNFISKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|119183283|ref|XP_001242701.1| hypothetical protein CIMG_06597 [Coccidioides immitis RS]
          Length = 530

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 148/301 (49%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   ++D+  S  LD    D + +E+   L+ +D+ V + Q + + +        +   
Sbjct: 9   RINAAVSDLTRSNDLDEKVFDSMLKEICAALLSADVNVRLVQNLRKSIKSSVNFSSIPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P ++PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--QLV-ALVDPHTEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D A +A +   + + +K 
Sbjct: 125 YQTRGFKSALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAADGVAKFKKEKF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +V+I+DT+GR      L A + ++   +K      P   + VLD++ GQ A  Q   F A
Sbjct: 185 EVIIVDTSGRHKQEEDLFAEMTQIQNAVK------PDQTILVLDSSIGQAAEAQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|317969124|ref|ZP_07970514.1| signal recognition particle protein [Synechococcus sp. CB0205]
          Length = 488

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 147/282 (52%), Gaps = 18/282 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100
           DG  +++   L+ +D+ + V +  VEE+  K   ++V V+ +  D    +++H+ L+   
Sbjct: 28  DGALKDVRRALLEADVSLPVVKDFVEEVRKKALGEEV-VRGISPDQKFIQVVHEQLVETM 86

Query: 101 KPFNWDFSHR-----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              N   +       P V+L+ G+ G GKTT   KL   + + G + +L   D +R AAI
Sbjct: 87  GGENAPLAPAGKEGAPAVVLMAGLQGAGKTTATAKLGLHLKEKGRRALLVGADVYRPAAI 146

Query: 156 DQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           +QLK    +   +     +G+DA   A+A    ++A+A+  D +++DTAGRL  ++ +M 
Sbjct: 147 EQLKTLGGQIGVEVFS--LGTDAKPEAIAAAGIEKAKAEGFDTVLVDTAGRLQIDTSMME 204

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              +M+R+ + +    P  VL V+D+  GQ A      FH   G TG ++TK+DG +RGG
Sbjct: 205 ---EMVRIREAVQ---PDEVLLVVDSMIGQEAAELTRAFHDQVGITGAVLTKLDGDSRGG 258

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 259 AALSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRILGMGD 300


>gi|307244407|ref|ZP_07526518.1| signal recognition particle protein [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492226|gb|EFM64268.1| signal recognition particle protein [Peptostreptococcus stomatis
           DSM 17678]
          Length = 452

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 118/208 (56%), Gaps = 12/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VI++VG+ G GKTT  GKL   +   G   +L A D +R AAI QL++  ++   D  
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLGGYLKKDGKSPLLVACDVYRPAAIKQLQVVGEKL--DLP 158

Query: 171 CSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
              +G   +   +A +A + A++   DV+IIDTAGRLH + +LM       + LK +   
Sbjct: 159 VFAMGDQVSPVEIAKKALEHAKSHSNDVVIIDTAGRLHVDEVLM-------QELKDIKTQ 211

Query: 229 A-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   E F+ + G  G+++TK+DG  RGG  + I    + P+ 
Sbjct: 212 VNPQEILLVVDSMTGQDAVNVSESFNEILGIDGVVLTKLDGDTRGGAALSIRAVTQKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G+GE +++LEPF     ++ I G  D
Sbjct: 272 FIGMGEKLDNLEPFYPDRMASRILGMGD 299


>gi|255505348|ref|ZP_05345603.3| signal recognition particle protein [Bryantella formatexigens DSM
           14469]
 gi|255268496|gb|EET61701.1| signal recognition particle protein [Bryantella formatexigens DSM
           14469]
          Length = 451

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 167/308 (54%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++ S  RL +  V+  L+++   L+ +D+   V ++ ++ +  +   
Sbjct: 5   FESLSDKLQNVFKNLRSKGRLTEADVKAALKEVKMALLEADVSFKVVKQFMKSVQERAVG 64

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPH----VILVVGVNGVGKTTV 127
            DV       Q V+    +++++ L+ L      + + RP     VI++VG+ G GKTT 
Sbjct: 65  ADVMTGLNPGQMVI----KIVNEELVALMGSETTEIALRPAGEITVIMMVGLQGAGKTTT 120

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+ K+   G   +LAA D +R AAI QL+I  ++   +            +A  A +
Sbjct: 121 TAKLAGKLKSKGRVPLLAACDVYRPAAIQQLQINGEKQGIEVFSMGDKQSPVNIARAAVE 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+++ ++V+I+DTAGRLH +  +M    +++++ + +  H   ++L V+DA TGQ+A+ 
Sbjct: 181 HAKSRNMNVVILDTAGRLHVDEEMM---DELVQIKEAV--HVDQTIL-VVDAMTGQDAVN 234

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             EMF+   G  G+I+TK+DG +RGG  + I  T   P+ ++G+GE ++DLE F     +
Sbjct: 235 VSEMFNEKIGIDGVILTKLDGDSRGGAALSIRATCGKPILYVGMGEKLSDLEQFYPDRMA 294

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 295 SRILGMGD 302


>gi|148555568|ref|YP_001263150.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sphingomonas
           wittichii RW1]
 gi|148500758|gb|ABQ69012.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sphingomonas
           wittichii RW1]
          Length = 491

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 152/280 (54%), Gaps = 16/280 (5%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKML 96
           VRE + ++   L+ +D+ + V ++ VE++  +   + V  SV   Q+V+  V++ + +ML
Sbjct: 27  VREAMREVRVALLEADVALPVVRQFVEKVTEQAVGQQVLRSVTPGQQVVKIVNDALVEML 86

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAI 155
              +   N D +  P ++++VG+ G GKTT   K++K++S+ G K VM+A+ D  R AA 
Sbjct: 87  GSEASDLNLDVTP-PAIVMMVGLQGSGKTTTTAKIAKRLSEKGRKKVMMASLDVNRPAAQ 145

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL +   + S   +    G     +A  A + A+ +  DVL++DTAGRLH +  LM  +
Sbjct: 146 EQLAVLGTQASVATLPIVAGQQPVDIARRALQAAKLQGFDVLMLDTAGRLHVDQALMEEM 205

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +  V +      P  +L V+DA TGQ+A+   + F      TG+++T+MDG ARGG  
Sbjct: 206 KAVATVAE------PEEILLVVDALTGQDAVNVAKSFSEQVALTGVVLTRMDGDARGGAA 259

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + +      P+ F+G GE ++ +E F     +  I G  D
Sbjct: 260 LSMRAVTGKPIKFVGTGEKLDGIELFQPARVAGRILGMGD 299


>gi|154251871|ref|YP_001412695.1| signal recognition particle protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154155821|gb|ABS63038.1| signal recognition particle protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 504

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 154/288 (53%), Gaps = 16/288 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIH 93
           +S + +D+ +RE +   L+ +D+ + VA+  ++++  +    +V ++ V     V +++H
Sbjct: 22  LSEKDVDEAMRE-VRRALLEADVALPVAKSFIDKVRARAIGHEV-LKSVTPGQQVIKIVH 79

Query: 94  KMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAG 147
             L+ +      D S       P VI++VG+ G GKTT   K++K+M+     ++M+A+ 
Sbjct: 80  DELVEMLGGAEADTSISLRAAAPVVIMMVGLQGSGKTTSTAKIAKRMTTRDKRRIMMASL 139

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT R AA +QLKI  ++     +    G     +A  A + A+    DVL++DTAGR+H 
Sbjct: 140 DTRRPAAQEQLKILGEQAGVATLPIVAGQQPVQIAKRAVEAARLGGFDVLMLDTAGRIHI 199

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  LMA + ++       D   PH  L V D+ TGQ+A+   E F+A  G TG+++T++D
Sbjct: 200 DEDLMAEVAQV------RDAANPHETLLVADSLTGQDAVNVAEQFNARIGVTGIVLTRVD 253

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  RGG  + +     +P+  LG GE ++ LE F A   +  I G  D
Sbjct: 254 GDGRGGAALSMRAVTGVPIKLLGTGEKMDALEDFRADRVAGRILGMGD 301


>gi|224373532|ref|YP_002607904.1| signal recognition particle protein [Nautilia profundicola AmH]
 gi|223589622|gb|ACM93358.1| signal recognition particle protein [Nautilia profundicola AmH]
          Length = 449

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 157/301 (52%), Gaps = 23/301 (7%)

Query: 27  KLKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           K+ +G    I+  R+ D  +      +EL+  L+++D+   V + ++ E+  +     + 
Sbjct: 4   KISDGFKSAINKIRMKDDEKALKKALDELKKNLLKADVHFKVVKDLLREVEVETKKAGIG 63

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
               L  + + + K+L   + P N+ F   S  P V+L+ G+ G GKTT   KL+  + +
Sbjct: 64  KANFLKALDKTLTKIL---TAPGNYGFVYASKPPTVVLMTGLQGSGKTTTTAKLANYLKE 120

Query: 138 -AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV++ A D  R AA++QLK  A++   D    E   D   +A    ++A+ K  DV
Sbjct: 121 FKKKKVLMVAADLQRLAAVEQLKQLAEQNGLDIFYDENSKDPVDIAKRGVEEAKEKFYDV 180

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDTAGRL  +  LM    ++I++   ++PH    +  V D+ TG++AL   + F    
Sbjct: 181 VLIDTAGRLAIDDELM---NELIKIKNEVNPH---EIFYVADSLTGKDALNTAKQFDEKL 234

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKI--PVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
             TG+I+TK DG ++GG  + + + H++  P+ F+G GE + D+E FV +   + I G  
Sbjct: 235 DITGVILTKYDGDSKGG--VALSIAHQVGKPLRFIGTGEKVQDIEVFVPERIVSRIMGAG 292

Query: 315 D 315
           D
Sbjct: 293 D 293


>gi|289616337|emb|CBI56864.1| unnamed protein product [Sordaria macrospora]
          Length = 512

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 152/301 (50%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80
           ++   ++D+  +  LD    DG+ +E+   L+ +D+ V +  ++ + + +    K++   
Sbjct: 9   RINAAVSDLTRAPNLDEKAFDGMLKEICSALLEADVNVRLVGQLRKSIKSTVNFKELPPA 68

Query: 81  ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                 +Q+ ++D  EL+ +++ P ++PF      + +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-RLVDPHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +V L   DTFR+ A DQLK  A +    +  S   +D   +A +   + + +K 
Sbjct: 125 YQSRGFRVGLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPVVVARDGVDKFKKEKF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +++I+DT+GR      L   +  +   +K      P   + VLDA+ GQ A  Q + F  
Sbjct: 185 EIIIVDTSGRHRQEESLFQEMMDIQTAVK------PDETIMVLDASIGQQAEAQAKAFKE 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ F+G GE + DLE FV  +F + + G  
Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATHTPIVFIGTGEHMLDLERFVPNNFISKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|193212765|ref|YP_001998718.1| signal recognition particle protein [Chlorobaculum parvum NCIB
           8327]
 gi|193086242|gb|ACF11518.1| signal recognition particle protein [Chlorobaculum parvum NCIB
           8327]
          Length = 449

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 138/268 (51%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   VA+K+VE++  K   ++V       Q ++  V++ + +++   ++P N   
Sbjct: 38  LLSADVNYKVAKKLVEDIREKSLGEEVIKSVSPAQMIVKIVNDELAEIMGGENQPLNLPP 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
              P +++V G+ G GKTT   KL+K++   G   ML A D +R AAI+QLK   ++   
Sbjct: 98  KKMPAIVMVAGLQGSGKTTFCAKLAKRLKKNGKNPMLVAADVYRPAAIEQLKTLGEQIDV 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                E   DA   A    + A+    DVLI+DTAGRL  +  +MA    +   L     
Sbjct: 158 PVYSVE-EQDAMKAALGGLEAAKNGAKDVLIVDTAGRLQIDEAMMAEAEALKNKL----- 211

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            +P  +L V+D+  GQ A+   + F+      G+++TK+DG +RGG  + I    + P+ 
Sbjct: 212 -SPDELLFVVDSMMGQEAVNTAKAFNERLDFDGVVLTKLDGDSRGGAALSIRQVVEKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+ VGE ++DL+ F     +  I G  D
Sbjct: 271 FMSVGEKVDDLDLFYPDRMAQRILGMGD 298


>gi|220934024|ref|YP_002512923.1| signal recognition particle protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995334|gb|ACL71936.1| signal recognition particle protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 453

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 152/288 (52%), Gaps = 16/288 (5%)

Query: 37  SSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDV 88
            +R  +D ++E L ++   L+ +D+ + V ++ +  +  +   ++V       Q ++  V
Sbjct: 19  QARITEDNIQETLREVRMALLEADVALPVVREFISRVKERALGQEVLSSLTPGQALIKIV 78

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAG 147
           ++ +  ++   ++    +    P VIL+ G+ G GKTT   KL++ + +   K V + + 
Sbjct: 79  NDELISVMGQANESLQLNV-QPPAVILMAGLQGSGKTTTTAKLARLLKERHKKNVAVVSC 137

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D +R AAI QL+  A     +F+ S  G D  A+A  A  QA+ K  DVLI+DTAGRLH 
Sbjct: 138 DVYRPAAIKQLETLAGEIDVEFIPSSGGEDPVAIASRALDQARKKFFDVLIVDTAGRLHV 197

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           ++ +MA I ++   +      +P   L V+D+ TGQ+A    + F+     TG+++TK D
Sbjct: 198 DADMMAEIQRLHTAV------SPVETLFVVDSMTGQDAANTAKAFNDALPLTGVVLTKAD 251

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G ARGG  + +      P+ FLG+GE    LEPF  +  ++ I G  D
Sbjct: 252 GDARGGAALSVRQITGKPIKFLGMGEKTGALEPFHPERVASRILGMGD 299


>gi|261250232|ref|ZP_05942808.1| signal recognition particle subunit Ffh SRP54 [Vibrio orientalis
           CIP 102891]
 gi|260939348|gb|EEX95334.1| signal recognition particle subunit Ffh SRP54 [Vibrio orientalis
           CIP 102891]
          Length = 464

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 156/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  ++ +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFIKRI--KESA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQSELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK +++   K V++ + D +R AAI QL+  A     DF  S        +A  A   
Sbjct: 119 KLSKLLTERDKKKVLVVSADVYRPAAIKQLETLATDVGVDFFPSTADQKPLDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRL  +  +MA I ++   +      +P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLIVDTAGRLAVDEQMMAEIQQLHTAI------SPVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++
Sbjct: 233 AKAFGDTLPLTGVILTKVDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEPFHPDRVAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|222615533|gb|EEE51665.1| hypothetical protein OsJ_33001 [Oryza sativa Japonica Group]
          Length = 550

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 152/304 (50%), Gaps = 13/304 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT G  S   KL+ G+ D+++   + + +R+ +   L+ +D+ + V ++ V  +  K  
Sbjct: 74  QLTTGLESAWNKLR-GV-DVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVSSISEKAL 130

Query: 76  AKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKL 131
             D +   R    + +++H  L+ L      D       P VIL+ G+ GVGKTTV  KL
Sbjct: 131 GSDLIRGVRPEQQLVKIVHDELVKLMGGEVSDLVFAKSGPTVILLAGLQGVGKTTVCAKL 190

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   ML A D +R AAIDQL I  ++           +  A +   A ++A+ 
Sbjct: 191 AFYLKKLGKSCMLVAADVYRPAAIDQLTILGEQVGVPVYSEGTEAKPAQITKNAVEEAKR 250

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D +++DTAGRL  +  +M  + ++ + +       P  VL V+DA TGQ A   V  
Sbjct: 251 KNIDAIVMDTAGRLQIDKSMMVELKEVKKAVN------PTEVLLVVDAMTGQEAAALVTT 304

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I+TK+DG +RGG  + +      P+ F+G GE + DLE F     +  + 
Sbjct: 305 FNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERMEDLELFYPDRMAQRVL 364

Query: 312 GCLD 315
           G  D
Sbjct: 365 GMGD 368


>gi|119488999|ref|ZP_01621934.1| Signal recognition particle protein [Lyngbya sp. PCC 8106]
 gi|119454955|gb|EAW36098.1| Signal recognition particle protein [Lyngbya sp. PCC 8106]
          Length = 480

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 148/288 (51%), Gaps = 15/288 (5%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELI 92
           D I+   + D +++ +   L+ +D+ + V ++ V E+  +     V S  R      +++
Sbjct: 20  DKITESNIQDALKD-VRRALLEADVNLQVVKEFVAEVGEQAQGSQVFSGVRPGEQFVKIV 78

Query: 93  HKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           H  L+ +    N   +     P ++L+ G+ G GKTT   KL+  +       ++ A D 
Sbjct: 79  HDELVKVMGESNVPLATADSPPTIVLMAGLQGTGKTTATAKLALHLRKENRTALMVATDV 138

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           +R AAIDQLK    +   +    E+GSDA    +A +  + A+ + VD +IIDTAGRL  
Sbjct: 139 YRPAAIDQLKTLGQQI--EVPVFELGSDADPVEIARQGVEYAKTQGVDTVIIDTAGRLQI 196

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  +MA + ++  V++      PH  L V+DA TGQ A    + F+   G +G I+TK+D
Sbjct: 197 DQDMMAELARIKAVVQ------PHDTLLVVDAMTGQEAATLTQTFNEQIGISGAILTKLD 250

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +RGG  + I      P+ F+GVGE +  L+PF  +  ++ I G  D
Sbjct: 251 GDSRGGAALSIRRISGAPIKFVGVGEKVEALQPFYPERMASRILGMGD 298


>gi|325294335|ref|YP_004280849.1| signal recognition particle protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064783|gb|ADY72790.1| signal recognition particle protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 448

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 10/283 (3%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY-AKDVSVQRVLYDVSELIHK 94
           I    L+ G+RE ++  L+ +D+   V    ++++  K   AK +        + +++H 
Sbjct: 22  IDEETLEKGLRE-IKLALLEADVNYRVVSNFIKDIKEKALGAKVIKGVNPAQQLVKIVHD 80

Query: 95  MLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            L+     +    +   +P VIL++G+ G GKTT   KL+  +   G +V+L + D +R 
Sbjct: 81  ELVQTLGGEAEKLNLKGKPSVILLIGLQGSGKTTTAAKLANYLKKQGKRVLLTSVDVYRP 140

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA+ QLK   D+        E   DA  +A +A  +A+ +  DVL++DTAGRLH +  L+
Sbjct: 141 AAMLQLKKLGDQIGIPVFLEEKEKDAVKIAKDALLKAKDESYDVLVVDTAGRLHIDEELL 200

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
               K+       +   P   L V+D+ TGQ ++   + F    G TG+++TKMD  ARG
Sbjct: 201 EEARKI------KEEVVPDETLFVIDSMTGQESVNIAKAFDERVGMTGIVLTKMDSDARG 254

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F GVGE I+D EPF     ++ I G  D
Sbjct: 255 GVALSVKGVTGKPIKFAGVGEKIDDFEPFYPDRVASRILGMGD 297


>gi|156059506|ref|XP_001595676.1| hypothetical protein SS1G_03765 [Sclerotinia sclerotiorum 1980]
 gi|154701552|gb|EDO01291.1| hypothetical protein SS1G_03765 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 528

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 153/310 (49%), Gaps = 20/310 (6%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           ++ L       S+++ +G +++    +  DG+ +E+   L+ +D+ V +   + + +   
Sbjct: 3   LQDLESAHKCCSIRILQGSSNL--DEKAFDGMIKEICSALLEADVNVRLVGNLRKSIKAS 60

Query: 74  RYAKDVS--------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
              K+++        +Q+ +YD  EL+ K++ P ++PF      + +VI+ VG+ G GKT
Sbjct: 61  VNFKELAPAVNKKKVIQKAVYD--ELV-KLVDPHAEPFKPK-KGKANVIMFVGLQGAGKT 116

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T   KL++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E 
Sbjct: 117 TTCTKLARWYQSRGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAKEG 176

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             + + +K +++I+DT+GR      L   +  +   +K      P   + VLDA+ GQ A
Sbjct: 177 VDKFKKEKFEIIIVDTSGRHRQEDALFQEMVDIQTAVK------PDQTVMVLDASIGQQA 230

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
             Q + F   A    +I+TK DG A GGG I  V     P+ F+G GE + DLE F    
Sbjct: 231 EAQSKAFKETADFGAIIITKTDGHASGGGAISAVAATHTPIVFIGTGEHMLDLEKFAPTQ 290

Query: 306 FSAVITGCLD 315
           F + + G  D
Sbjct: 291 FVSKLLGMGD 300


>gi|325105803|ref|YP_004275457.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pedobacter
           saltans DSM 12145]
 gi|324974651|gb|ADY53635.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pedobacter
           saltans DSM 12145]
          Length = 448

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 139/274 (50%), Gaps = 12/274 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKP 102
           +E+   L+ +D+    A+   +E+  K   ++V    S  ++L  V      +LM  S  
Sbjct: 32  KEIRKALLDADVNYKTAKSFTDEVKQKALGQNVLTAISPGQLLTKVMNDELTLLMGGSVT 91

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIW 161
              D    P +IL+ G+NG GKTT  GKL+  + +    K +L AGD +R AAIDQL++ 
Sbjct: 92  -ELDLKQNPTIILIAGLNGAGKTTFTGKLANFLKTQKNKKPLLVAGDVYRPAAIDQLEVL 150

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A +  A+   +    D  A+A E     +    +V+IIDTAGRL  +  LM  I ++ + 
Sbjct: 151 AGQVGAEVYTNRESKDPVAIALEGIAHGKQNGNNVIIIDTAGRLTLDDALMDEIAEVKKA 210

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                   P  +L V+DA TGQ+A+   + F+     TG+++TK+DG  RGG  + I   
Sbjct: 211 TN------PQEILFVVDAMTGQDAVNTAKAFNDRLDFTGVVLTKLDGDTRGGAALSIKSV 264

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ F+G GE ++ L+ F     ++ I G  D
Sbjct: 265 VNKPIKFVGTGEKMDALDVFYPDRMASRILGMGD 298


>gi|327294833|ref|XP_003232112.1| signal recognition particle 54K protein [Trichophyton rubrum CBS
           118892]
 gi|326466057|gb|EGD91510.1| signal recognition particle 54K protein [Trichophyton rubrum CBS
           118892]
          Length = 534

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 150/301 (49%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   ++D+  S  +D    D + +E+   L+ +D+ V + Q++ + +        +   
Sbjct: 9   RINAAVSDLTRSNAVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQLPSIPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P ++PF      + +VI++VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--QLV-ALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D   ++ E   + + ++ 
Sbjct: 125 YQTKGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR      L A + ++   +K      P   + VLD+T GQ A  Q   F +
Sbjct: 185 DIIIVDTSGRHRQEEDLFAEMTQIQSAIK------PDQTIMVLDSTIGQAAETQSAAFKS 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V   + P+ FLG GE + DLE F  + F   + G  
Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPRPFVQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|256843368|ref|ZP_05548856.1| signal recognition particle protein [Lactobacillus crispatus
           125-2-CHN]
 gi|256849811|ref|ZP_05555242.1| signal recognition protein Ffh [Lactobacillus crispatus MV-1A-US]
 gi|262046944|ref|ZP_06019904.1| signal recognition particle protein [Lactobacillus crispatus
           MV-3A-US]
 gi|293381186|ref|ZP_06627194.1| signal recognition particle protein [Lactobacillus crispatus 214-1]
 gi|256614788|gb|EEU19989.1| signal recognition particle protein [Lactobacillus crispatus
           125-2-CHN]
 gi|256713300|gb|EEU28290.1| signal recognition protein Ffh [Lactobacillus crispatus MV-1A-US]
 gi|260572926|gb|EEX29486.1| signal recognition particle protein [Lactobacillus crispatus
           MV-3A-US]
 gi|290922226|gb|EFD99220.1| signal recognition particle protein [Lactobacillus crispatus 214-1]
          Length = 476

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  ++ +  +   K+V       Q+V+  V+E + KM+   + P N   
Sbjct: 39  LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            H P +I++VG+ G GKTT +GKL+  +      + +L AGD +R AA+DQLK   D+  
Sbjct: 98  KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGDQLK 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D A +  +   +A+  K D ++IDTAGRL  +  LM  + ++ +V     
Sbjct: 158 VPVYSEDGEKDVAKIVQDGLAEAEKNKNDYVLIDTAGRLEIDEPLMEELERVKKVTH--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P ++L V+DA TGQ A    + F      TG+I+TK+DG  RGG  + I      P+
Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G GE ++DL+ F     ++ I G  D
Sbjct: 272 LFTGQGEKLSDLDVFHPDRMASRILGMGD 300


>gi|320161007|ref|YP_004174231.1| signal recognition particle protein [Anaerolinea thermophila UNI-1]
 gi|319994860|dbj|BAJ63631.1| signal recognition particle protein [Anaerolinea thermophila UNI-1]
          Length = 440

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 152/304 (50%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++  T++    +L     D V  E+   L+ +D+  +V +  V  +  +   
Sbjct: 2   FETLTQRLEQIFTNLRRRGKLTEQDVDAVMREVRLALLEADVHYSVVKDFVSRVRERAVG 61

Query: 77  KDVSVQRVLYDVSELI----HKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKL 131
            +VS  R L    ++I     +++  L +P   + +  +P  +++VG+ G GKTT   KL
Sbjct: 62  AEVS--RALNPAQQVIKIVHEELIKTLGEPQWLNLTGPKPRALMLVGLQGSGKTTAAAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +   G +V+L A D +R AA+ QL+   ++     V  E       L  +A++ AQ 
Sbjct: 120 ARLLRSQGERVLLVAADPYRPAAVKQLQTLGEKVGVP-VYYEEKVAPPLLCAKAYEHAQK 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
               V+I+DTAGR   +  LMA +  +       D  +P  +L V+D+  GQ AL   + 
Sbjct: 179 GGYSVIIMDTAGRSQLDDALMAELKAIT------DKVSPADILLVVDSMIGQEALHVAQG 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TGLIMTKMDG +RGG  I I     +P+ FLG GEGI+ LE +     ++ I 
Sbjct: 233 FRQAVNLTGLIMTKMDGDSRGGAAISIRSVTGVPIKFLGTGEGIDALEVYDPSRLASRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|255722509|ref|XP_002546189.1| signal recognition particle 54 kDa protein [Candida tropicalis
           MYA-3404]
 gi|240136678|gb|EER36231.1| signal recognition particle 54 kDa protein [Candida tropicalis
           MYA-3404]
          Length = 555

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 146/307 (47%), Gaps = 45/307 (14%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQK-------------IVEELLTKRYAKDVSVQRVL 85
           DD +++ ++D+   L+ SD+ V +  K             IV+E  T    K   +Q+++
Sbjct: 22  DDEIQQMIKDICGALLESDVNVKLVAKLRGNIKTKIEEGNIVQE--TSAMNKRKKLQKII 79

Query: 86  YD-VSELIHKMLMPLSKPFNWDFSHR-------------PHVILVVGVNGVGKTTVIGKL 131
           +D +  L+   + P  KP     + +              HVI+ VG+ G GKTT   KL
Sbjct: 80  FDELCALVDSHVEP-PKPKKLSTTTKTINGKKIRLSKESSHVIMFVGLQGAGKTTSCTKL 138

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G KV L   DTFR+ A DQLK  A + +  +  S +  D   +A+E  ++ + 
Sbjct: 139 AVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSYLEPDPVKIAFEGVQKFKQ 198

Query: 192 KKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           +K D++I+DT+GR      L   M  IG+ ++         P   + V+D + GQ A  Q
Sbjct: 199 EKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ---------PTQTIMVMDGSIGQAAESQ 249

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F   +    +I+TKMDG A+GGG I  V   K P+ F+G GE I DLE F    F +
Sbjct: 250 ARAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHIGDLEIFKPTTFIS 309

Query: 309 VITGCLD 315
            + G  D
Sbjct: 310 KLLGIGD 316


>gi|300814481|ref|ZP_07094742.1| putative signal recognition particle protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|300511399|gb|EFK38638.1| putative signal recognition particle protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 321

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 152/308 (49%), Gaps = 25/308 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+  +  +    +L     D    E++  L+ +D+   V +  ++   TK  A
Sbjct: 3   FESLSEKLQNTLNKLTGKGKLTEKDIDAAMREVKLALLEADVNFKVVKDFIKN--TKERA 60

Query: 77  KDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               V       Q+V+  V++ +  ++    +    D+S +P VIL+ G+ G GKTT  G
Sbjct: 61  LGSQVLESLTPGQQVIKIVNDELKNLMG--KEQVKIDYSKKPTVILMCGLQGAGKTTTAG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--DAAALAYEAFK 187
           KL+ KM   G + +L A D +R AAI QL++     S D     +G   D   ++  + +
Sbjct: 119 KLANKMKQEGKRPLLVACDVYRPAAIKQLQVVG--KSVDVPVFTMGDKIDPVDISKASLE 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLIIDTAGRL  +  LM  +  +   L+      P  VL VLD+ TGQ A+ 
Sbjct: 177 HAKKNGNDVLIIDTAGRLQIDEKLMQELKNIYDALE------PSEVLLVLDSMTGQEAVN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+I+TK+DG ARGG  + I     +P+ F+  GE ++++E F     +
Sbjct: 231 VADTFDDTLKLTGVILTKLDGDARGGAALSIRAVTDVPIKFIASGEKMDNIEVFHPDRMA 290

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 291 SRILGMGD 298


>gi|149246331|ref|XP_001527635.1| signal recognition particle 54 kDa protein [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146447589|gb|EDK41977.1| signal recognition particle 54 kDa protein [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 563

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 107/207 (51%), Gaps = 12/207 (5%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           HVI+ VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A + +  +  
Sbjct: 119 HVIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYG 178

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPH 228
           S +  D   +AYE  ++ + +K D++I+DT+GR      L   M  IG+ ++        
Sbjct: 179 SYLEPDPVKIAYEGVQKFKHEKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ-------- 230

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   + V+D + GQ A  Q   F   A    +I+TKMDG A+GGG I  V   K P+ F
Sbjct: 231 -PTQTIMVMDGSIGQAAESQARAFKESADFGSIILTKMDGHAKGGGAISAVAATKTPIVF 289

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE + DLE F    F + + G  D
Sbjct: 290 IGTGEHVGDLEIFKPTTFVSKLLGIGD 316


>gi|295693164|ref|YP_003601774.1| signal recognition particle protein ffh [Lactobacillus crispatus
           ST1]
 gi|295031270|emb|CBL50749.1| Signal recognition particle protein Ffh [Lactobacillus crispatus
           ST1]
          Length = 476

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  ++ +  +   K+V       Q+V+  V+E + KM+   + P N   
Sbjct: 39  LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            H P +I++VG+ G GKTT +GKL+  +      + +L AGD +R AA+DQLK   D+  
Sbjct: 98  KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGDQLK 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D A +  +   +A+  K D ++IDTAGRL  +  LM  + ++ +V     
Sbjct: 158 VPVYSEDGEKDVAKIVQDGLAEAEKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAH--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P ++L V+DA TGQ A    + F      TG+I+TK+DG  RGG  + I      P+
Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G GE ++DL+ F     ++ I G  D
Sbjct: 272 LFTGQGEKLSDLDVFHPDRMASRILGMGD 300


>gi|224532274|ref|ZP_03672906.1| signal recognition particle protein [Borrelia valaisiana VS116]
 gi|224511739|gb|EEF82145.1| signal recognition particle protein [Borrelia valaisiana VS116]
          Length = 444

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 143/276 (51%), Gaps = 15/276 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103
           E +++ L+ +D+ + V ++ +  ++ +  ++ V V R +   S+ I  +   L K     
Sbjct: 32  EIIKNSLVDADVNLRVVRRFLNSIIEE--SRGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89

Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           N++ S  P      IL+VG+ G GKTT   KLS ++     KV+L A DTFR+AAI+QLK
Sbjct: 90  NYELSLNPINKQSYILMVGLQGSGKTTTCAKLSLRLKKENRKVLLVAADTFRAAAIEQLK 149

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I   +        E   D   +   + K A+++  D +I+DT GRL   S+L+  I K+ 
Sbjct: 150 ILGSQIGVPVFSLEGEKDPIKIVKASMKVAESEFFDSVIVDTRGRLEVESLLVEEIKKIK 209

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            +L+      P   + VLD+ TGQ A+   + F+   G TG I +K D   RGG ++   
Sbjct: 210 EILQ------PTETILVLDSMTGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +P+ F+GVGE I DL+ F  +  ++ I G  D
Sbjct: 264 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 299


>gi|114567018|ref|YP_754172.1| signal recognition particle protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337953|gb|ABI68801.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 448

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 117/205 (57%), Gaps = 7/205 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P + ++VG+ G GKTT + KL + +   G + +L AGD +R AAI QL++  ++     V
Sbjct: 101 PSIYMLVGLQGAGKTTTVAKLGRNLLRQGRRPVLVAGDIYRPAAIKQLQVLGEQVGIP-V 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S   S+   +A  + + A+++  D++I+DTAGRLH N  LM  + ++   +       P
Sbjct: 160 FSMGQSNPVDIARASLEYARSQNRDIVILDTAGRLHINEELMDELKQIKSAIN------P 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H +L V+DA TGQ+A+   E F+   G TG+I+TK+DG  RGG  + +      P+ ++G
Sbjct: 214 HEILLVVDAMTGQDAVNVAESFNRDLGLTGVILTKLDGDTRGGAALSVKAVTGCPIKYVG 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           +GE ++ LE F     ++ I G  D
Sbjct: 274 MGEKLDALETFFPDRMASRILGMGD 298


>gi|170078230|ref|YP_001734868.1| signal recognition particle protein [Synechococcus sp. PCC 7002]
 gi|169885899|gb|ACA99612.1| signal recognition particle protein [Synechococcus sp. PCC 7002]
          Length = 478

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 123/224 (54%), Gaps = 20/224 (8%)

Query: 83  RVLYDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           +++YD  EL+  M    +PL++  N     +P VIL+ G+ G GKTT   KLS  +    
Sbjct: 76  KIVYD--ELVKIMGESNVPLAEAEN-----KPSVILMAGLQGTGKTTATAKLSLYLRKQN 128

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVL 197
              ++ A D +R AAIDQLK   ++   D    ++GSDA    +A +  ++A+   VDV+
Sbjct: 129 KTALMVATDVYRPAAIDQLKTLGEQI--DVPVFDLGSDANPVDIAKQGVEKAKELGVDVV 186

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  ++ +MA + ++   +       P   L V+D+ TGQ A      FH   G
Sbjct: 187 LVDTAGRLQIDADMMAELKQIKESIN------PDDTLLVVDSMTGQEAASLTRTFHEEIG 240

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            TG I+TKMDG  RGG  + + +    P+ F+GVGE +  LEPF
Sbjct: 241 VTGAILTKMDGDTRGGAALSVRMISGQPIKFIGVGEKVEALEPF 284


>gi|319941756|ref|ZP_08016078.1| ffh protein [Sutterella wadsworthensis 3_1_45B]
 gi|319804689|gb|EFW01556.1| ffh protein [Sutterella wadsworthensis 3_1_45B]
          Length = 473

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 140/273 (51%), Gaps = 17/273 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS---------VQRVLYDVSELIHKMLMPLSKPF 103
           L+ +D+ + V ++++  +  K   ++V          V  V  +++ +I   L P  +  
Sbjct: 38  LLEADVALPVVKEVLSRIKEKAMGEEVVGNLNPGQALVGVVQRELTAIIGGDLPPEERSL 97

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           N+     P VIL+ G+ G GKTT  GKL++ +  D   KV+  + D +R AAIDQLK   
Sbjct: 98  NFRV-QPPAVILLAGLQGAGKTTTAGKLARWLVHDEKKKVLTVSCDVYRPAAIDQLKAVT 156

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           ++  AD+  S  G     +A  A  +A+ +  DVLI+DTAGRL  + ++M  +  +   L
Sbjct: 157 EQAGADWFPSHTGEKPLDIAAAAVSEARRRFYDVLIVDTAGRLAIDEVMMQEVADLNTFL 216

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           K      P   L V+DA  GQ+A+   + F+     TG+++TK DG +RGG  + +    
Sbjct: 217 K------PAETLFVIDAMLGQDAVNTAKAFNDRLPLTGIVLTKADGDSRGGASLSVRYVT 270

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+G GE +   EPF  +  ++ I G  D
Sbjct: 271 GKPIKFIGTGEKLGGFEPFDPEAMASRILGMGD 303


>gi|315152349|gb|EFT96365.1| signal recognition particle protein [Enterococcus faecalis TX0031]
          Length = 472

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 162/309 (52%), Gaps = 23/309 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +  V+E + ++   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129
             +V       Q+++  V E + K L   S+    + S + P VI++ G+ G GKTT  G
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLG--SETVELNKSPKIPTVIMMTGLQGAGKTTFTG 119

Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAF 186
           KL+K  M     + +L AGD +R AAIDQLK+   +   +    ++G+DA    +  +  
Sbjct: 120 KLAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQL--EVPVFDMGTDANPVEIVRQGL 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+ KK D ++IDTAGRLH +  LM  + K I+ L       P+ +L V+DA TGQ+A+
Sbjct: 178 ALAKEKKNDYVLIDTAGRLHIDEALMDEL-KQIKELTN-----PNEILLVVDAMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     
Sbjct: 232 NVAVSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRM 291

Query: 307 SAVITGCLD 315
           S+ I G  D
Sbjct: 292 SSRILGMGD 300


>gi|299536774|ref|ZP_07050082.1| signal recognition particle-like (SRP) component [Lysinibacillus
           fusiformis ZC1]
 gi|298727786|gb|EFI68353.1| signal recognition particle-like (SRP) component [Lysinibacillus
           fusiformis ZC1]
          Length = 452

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 8/235 (3%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GL 140
           Q+V+  V + + +++     P  ++ +  P VI++VG+ G GKTT  GKL+  +      
Sbjct: 73  QQVIKIVQDELTELMGGEQSPIKFN-TKPPTVIMMVGLQGAGKTTTTGKLANVLRKKYNR 131

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K +L A D +R AA+ QL+    + S              +A +A + A+ +  DV+IID
Sbjct: 132 KPLLVAADVYRPAAVQQLQTLGKQLSLPVFALGTEVSPVEIARQAIELAKEEHHDVVIID 191

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRLH +  LM  + K IR LK      P  V  V+DA TGQ+A+   E F+   G TG
Sbjct: 192 TAGRLHIDEDLMQEL-KDIRSLKE-----PDEVFLVVDAMTGQDAVNVAESFNEAIGITG 245

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +++TK+DG  RGG  + I    + P+ F+G+GE ++ LEPF  +  ++ I G  D
Sbjct: 246 VVLTKLDGDTRGGAALSIRSVTQKPIKFVGMGEKMDALEPFHPERMASRILGMGD 300


>gi|127511995|ref|YP_001093192.1| signal recognition particle protein [Shewanella loihica PV-4]
 gi|126637290|gb|ABO22933.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           loihica PV-4]
          Length = 457

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D ++E L ++   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEDNIKETLREVRMALLEADVALPVVRAFVNSVKDRAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   +   +   ++  N   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVTKSLSPGQAFIKIVQSELENAMGEANEALNLS-AQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +   K V++ + D +R AAI QL+  A+    +F  S++      +   A   A+
Sbjct: 121 SKFLRERQKKSVLVVSADVYRPAAIKQLETLANEVEVEFFPSDVSQKPIDIVDAAMAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDESMMDEIKALHAAVK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|197103583|ref|YP_002128960.1| signal recognition particle protein [Phenylobacterium zucineum
           HLK1]
 gi|196477003|gb|ACG76531.1| signal recognition particle protein [Phenylobacterium zucineum
           HLK1]
          Length = 508

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 151/289 (52%), Gaps = 17/289 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH- 93
           ++S + +D+ +RE +   L+ +D+ + V ++ +++   K  A   +V R +    ++I  
Sbjct: 23  VLSEKDIDEAMRE-VRVALLEADVALPVVRQFIDK--AKERATGEAVIRSVKPADQVIKI 79

Query: 94  ------KMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
                 +ML    +P     S + P VIL+ G+ G GKTT  GKL+ ++S    KV+LA+
Sbjct: 80  TYDGLVEMLGGDGEPEGLRLSANPPTVILMSGLQGSGKTTTAGKLALRLSKERKKVLLAS 139

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DT R AA++QL + A +   D +    G  A  +   A + A+ +  DVLI+DTAGR  
Sbjct: 140 LDTRRPAAMEQLAMLATQAGVDSLPIVPGQSAPDITRRALQAARLQGYDVLILDTAGRTT 199

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  +M+   ++ ++        P   L V DA TGQ+A+R  + FH     TGL++T+ 
Sbjct: 200 LDEAMMSEAAEIAKI------SNPSETLLVADALTGQDAVRTAKAFHERLPLTGLVLTRA 253

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + +     +P+ FLGV E I+ L+ F A   +  I G  D
Sbjct: 254 DGDGRGGAALSMRAVTGLPIKFLGVSEKIDGLDAFDAHRVAGRILGRGD 302


>gi|262369269|ref|ZP_06062597.1| GTP-binding signal recognition particle protein [Acinetobacter
           johnsonii SH046]
 gi|262315337|gb|EEY96376.1| GTP-binding signal recognition particle protein [Acinetobacter
           johnsonii SH046]
          Length = 468

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 158/307 (51%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + + +L + + ++  S +L +D +++ L ++   L+ +D+ + V +    K+ EE L 
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHRPHVI-LVVGVNGVGKTTVIG 129
           +     +S  +      +++H  L  +    N   D + +P V+ L+ G+ G GKTT   
Sbjct: 62  QEVMTQLSPGQAFV---KIVHDELTKMMGEANESLDLAAKPPVVVLLAGLQGAGKTTTAA 118

Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL++ + +    KV + + D +R AAI QL+  A    A F  S        +A  A +Q
Sbjct: 119 KLARFLQERQKKKVAMVSADVYRPAAIKQLQTVAGEVGAIFFESSADEKPITIATRAIEQ 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A   
Sbjct: 179 AKIQFADVLIVDTAGRLHVDDEMMDEIKELHAAIK------PTETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF  +  + 
Sbjct: 233 AKAFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPERVAQ 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|46198982|ref|YP_004649.1| signal recognition particle protein ffh [Thermus thermophilus HB27]
 gi|55981005|ref|YP_144302.1| signal recognition particle protein [Thermus thermophilus HB8]
 gi|46196606|gb|AAS81022.1| signal recognition particle protein ffh [Thermus thermophilus HB27]
 gi|55772418|dbj|BAD70859.1| signal recognition particle protein [Thermus thermophilus HB8]
          Length = 434

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 147/304 (48%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + +L+E I  +    R+ +    G   E+   LI +D+ + VA+  VEE+  +   
Sbjct: 2   FQQLAARLQEAIDRLRGRGRITEEDLKGTLREIRRALIEADVNLEVARAFVEEVRERALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       + VL  V E + + L    +P +     R +V  +VG+ G GKTT   KL
Sbjct: 62  RKVLESLTPAEVVLATVYEALKEALG--GEPKHPQLKDR-NVWFLVGLQGSGKTTTAAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL++  ++     +  + G    ++     ++A+ 
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRVLGEKVGVPVLEVQDGESPESIRRRVEERARL 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++++DTAGRL  +  LM  + ++   L+      P  VL VLDA TGQ AL   + 
Sbjct: 179 EVRDLVLVDTAGRLQIDERLMEELVRLKAALR------PDEVLLVLDAMTGQEALSVAQA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF     +  I 
Sbjct: 233 FDERVGVTGLVLTKLDGDARGGAALSARRVTGKPIYFAGVSERPEGLEPFYPDRLAGRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|115433004|ref|XP_001216639.1| signal recognition particle 54 kDa protein [Aspergillus terreus
           NIH2624]
 gi|114189491|gb|EAU31191.1| signal recognition particle 54 kDa protein [Aspergillus terreus
           NIH2624]
          Length = 526

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 145/301 (48%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVNDLTRSNNLDEKAFDDMLKEICAALLSADVNVRLVQSLRKSIKSSVNFASLPSA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  EL+  ++ P ++PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-ALVNPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ 
Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   F A
Sbjct: 185 EIIIVDTSGRHKQEEELFTEMTQIQTAV------TPDQTILVLDSTIGQAAEAQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|50084052|ref|YP_045562.1| GTP-binding signal recognition particle protein [Acinetobacter sp.
           ADP1]
 gi|49530028|emb|CAG67740.1| 4.5S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Acinetobacter sp.
           ADP1]
          Length = 470

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +D +++ L ++   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEQALG 61

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFN--WDFSHRPHVI-LVVGVNGVGKTTVIGKLS 132
           ++V  Q        +++H  L  +    N   D + +P V+ L+ G+ G GKTT   KL+
Sbjct: 62  QEVMTQLSPGQAFVKIVHDELTKMMGEANESLDLAAKPPVVVLLAGLQGAGKTTTAAKLA 121

Query: 133 KKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + + +    KV + + D +R AAI QL+  A    A F  S        +A  A +QA+ 
Sbjct: 122 RFLQERQKKKVAMVSADVYRPAAIKQLQTVAAEVGAMFFESNANEKPIDIANRAIEQAKI 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    + 
Sbjct: 182 QFADVLIVDTAGRLHVDEDMMGEIKELHASIK------PTETLFVVDAMTGQDAANTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF  +  +  I 
Sbjct: 236 FNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPERIAQRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|169350198|ref|ZP_02867136.1| hypothetical protein CLOSPI_00942 [Clostridium spiroforme DSM 1552]
 gi|169292981|gb|EDS75114.1| hypothetical protein CLOSPI_00942 [Clostridium spiroforme DSM 1552]
          Length = 465

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 152/303 (50%), Gaps = 14/303 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELED----LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+  +  +    RL +   EE+       L+ +D+   V ++ +     K   
Sbjct: 3   FDSLSERLQGTLKKVSGQGRLTEKNMEEMLSEIRLALLEADVNFQVVKEFIAATKEKALG 62

Query: 77  KDV-SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           +DV    +    V +++H  L+ L  +     D++ +P VI++VG+ G GKTT  GK++ 
Sbjct: 63  QDVLGSLKPGQVVVKIVHDELVELLGTTVATIDYNKKPTVIMMVGLQGSGKTTTAGKIAN 122

Query: 134 KMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +S   G K +L A D +R AA+DQLK   ++ +           A ++  EA + A+  
Sbjct: 123 LISKKNGKKPLLVAADIYRPAAVDQLKTLGEQLNIPVYEKGTSQSAESIVEEAMRFAREN 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV+IIDTAGRLH +  LM  +  +  +        PH +L V+DA TGQ+ +     F
Sbjct: 183 NNDVIIIDTAGRLHIDEPLMQELSNIKEIAH------PHEILLVVDALTGQDIVNVASSF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     TG ++TK+DG +RGGG + I     +P+ F+G GE ++ ++ F     +  I G
Sbjct: 237 NEQLSITGAVLTKLDGDSRGGGALSIRHITHVPIKFIGTGEKLDAIDLFYPDRMADRILG 296

Query: 313 CLD 315
             D
Sbjct: 297 MGD 299


>gi|218887972|ref|YP_002437293.1| signal recognition particle protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758926|gb|ACL09825.1| signal recognition particle protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 518

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 155/308 (50%), Gaps = 24/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F S S +L         + RLD     DG+RE +   L+ +D+   V +  +E +  +  
Sbjct: 2   FDSLSDRLTGVFRKFTGTGRLDEANIQDGLRE-VRLALLEADVNFKVVRDFIERVRERCL 60

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTV 127
            +DV       Q+V+    +++H  L+ L          R   P+VI++VG+ G GKTT 
Sbjct: 61  GQDVLKSLTPAQQVV----KIVHDELVELLGGGTTQLDLRGKQPYVIMMVGLQGSGKTTS 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             K++  +    ++  L   D +R AAIDQL   A +       S  G +   +A  A +
Sbjct: 117 SAKIANLLRKQKMRPYLVPADVYRPAAIDQLHTLAKQLDIPAYPSAPGMNPVDIAVAAVE 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K+ +V+I+DTAGRLH +  LM    +++ +  R++   P  +L V DA TGQ+A+ 
Sbjct: 177 DAREKQCNVVIVDTAGRLHIDETLMQ---ELVSIKGRVE---PQEILFVADAMTGQDAVT 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             E F+     +G+++TKMDG ARGG  + I      PV F+G+GE ++D+E F     +
Sbjct: 231 VAESFNTALDISGVVLTKMDGDARGGAALSIRSVTGKPVKFVGMGEKLSDIEVFHPDRVA 290

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 291 GRILGMGD 298


>gi|159901134|ref|YP_001547381.1| signal recognition particle protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894173|gb|ABX07253.1| signal recognition particle protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 449

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/262 (33%), Positives = 143/262 (54%), Gaps = 14/262 (5%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVIL 115
           D    V ++ + E +TK       V ++++D  EL+H +L   + P N   +  +P +++
Sbjct: 50  DFVARVREQAIGEEVTKSLTPGQQVIKIVHD--ELVH-LLGDANVPINESKNREQPTIVM 106

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VG+ G GKTT+  KL+  M   G   +L A D +R AAI QL+    + +   V SE G
Sbjct: 107 LVGLQGAGKTTMAAKLALYMRKKGKTPLLVAADIYRPAAIKQLETLGKQLNIP-VYSE-G 164

Query: 176 SDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           ++ A   +A  A +QA+    + +I+DTAGRL  +  LM    ++ +V++R+    P  +
Sbjct: 165 TEVAPPDIAEHALRQARINGNNFVIVDTAGRLQIDERLMT---ELQQVVERI---GPTEI 218

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + V+DA  GQ +++  E FHA    TGLIMTK+DG ARGG  + +     +P+ FLG GE
Sbjct: 219 MLVVDAMIGQESVKVAEAFHAKVPLTGLIMTKIDGDARGGAALSMREVTGVPIKFLGTGE 278

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
             + +EPF     +  I G  D
Sbjct: 279 KTDAIEPFHPDRLAQRILGMGD 300


>gi|45359114|ref|NP_988671.1| signal recognition particle protein Srp54 [Methanococcus
           maripaludis S2]
 gi|74579561|sp|Q6LX03|SRP54_METMP RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|45047989|emb|CAF31107.1| signal recognition particle protein SRP54 [Methanococcus
           maripaludis S2]
          Length = 450

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 150/278 (53%), Gaps = 22/278 (7%)

Query: 39  RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           ++L   V ++++  LI+SD+ V         + +K ++E   K  +K   + +++YD  E
Sbjct: 24  KKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIDEAPPKGLSKKEHIVKIVYD--E 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L+ K+L   ++    D S +  VIL++G+ G GKTT   KL++ +   GL+  L A D +
Sbjct: 82  LV-KLLGETTQKLELDPSKK-SVILLIGIQGSGKTTSAAKLARYIQKKGLRPGLIAADVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAA-LAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           R AA  QLK  +++ +      E  +     +  E  ++   KKVDV+IIDTAGR     
Sbjct: 140 RPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKL--KKVDVIIIDTAGRHKEEE 197

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDG 268
            L+A + +M       D   P+ ++ V+D T GQ A  Q + F  +V+    +++TK+DG
Sbjct: 198 GLLAEMKEM------KDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDG 251

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +A+GGG +  V     P+ F+G GEG+++LE F  K F
Sbjct: 252 SAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKF 289


>gi|39976193|ref|XP_369487.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145011749|gb|EDJ96405.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 510

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 150/297 (50%), Gaps = 20/297 (6%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS------ 80
           ++   ++D+  +  LD+  + ++   L+ +D+ V +  ++ + + +    K++       
Sbjct: 9   RINAAVSDLTRAPNLDE--KAKICAALLEADVNVRLVGQLRKSIKSTVNFKELPPAVNKK 66

Query: 81  --VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
             +Q+ ++D  EL+  ++ P ++PF      + +VI+ VG+ G GKTT   KL++     
Sbjct: 67  RLIQKAVFD--ELVS-LVDPHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKLARHYQSR 122

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ +V+I
Sbjct: 123 GFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVAREGVDKFKKERFEVII 182

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DT+GR    S L   +  + + +K      P   + VLDA+ GQ A  Q + F   A  
Sbjct: 183 VDTSGRHRQESALFQEMMDIQKAVK------PDETIMVLDASIGQQAEAQAKAFKEAADF 236

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             +I+TK DG A GGG I  V     P+ F+G GE + DLE F  + F + + G  D
Sbjct: 237 GAIIITKTDGHASGGGAISAVAATHTPIVFIGTGEHMLDLERFAPQQFISKLLGMGD 293


>gi|320106880|ref|YP_004182470.1| signal recognition particle protein [Terriglobus saanensis SP1PR4]
 gi|319925401|gb|ADV82476.1| signal recognition particle protein [Terriglobus saanensis SP1PR4]
          Length = 460

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 145/291 (49%), Gaps = 24/291 (8%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKP 102
           E+   L+ SD+ + V   ++E +  K     V+      ++V+  V + + ++L   +  
Sbjct: 33  EIRLALLESDVNLNVVGTLIEHVREKALGTQVATALSPTEQVIKIVHDELVEILGRDTAR 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           F +  S  P VIL+ G+ G GKTT  GKL+  +   G + ML + D +R AA  QL+I A
Sbjct: 93  FKF-ASQPPTVILMAGLQGSGKTTTSGKLAAWLKKGGHRPMLVSVDVYRPAARQQLEIVA 151

Query: 163 DRTSADFVCSEIGSDAAA------LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
              SA     ++  + A       LA EA ++A     DVLI+DTAGRL  +  LM  + 
Sbjct: 152 KSISAQIYLGDLKGEPAGTPLVERLAREAKREAANFGCDVLIVDTAGRLGIDQPLMDEMA 211

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            + ++L       P  +L V DA TGQ+A+   + FH   G TG+++TKMDG ARGG  +
Sbjct: 212 SLKKLLN------PSEILFVADAMTGQDAVNSADAFHKQLGITGVVLTKMDGDARGGAAL 265

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG------CLDYGEEKI 321
            I      PV F+G GE  +  E F      + I G       L+  EEK+
Sbjct: 266 SIRNVTGAPVKFIGTGEKPDAFEAFHPDRIVSRIMGMGDVATLLERAEEKL 316


>gi|288817542|ref|YP_003431889.1| signal recognition particle GTPase [Hydrogenobacter thermophilus
           TK-6]
 gi|288786941|dbj|BAI68688.1| signal recognition particle GTPase [Hydrogenobacter thermophilus
           TK-6]
 gi|308751145|gb|ADO44628.1| signal recognition particle protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 436

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 115/203 (56%), Gaps = 7/203 (3%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V++ VG+ G GKTT IGKL+  + +   KV +++ D  R AA+ QL+  A++    +   
Sbjct: 97  VVIFVGLQGTGKTTTIGKLANFLKNQSFKVAVSSTDVRRPAAMLQLQRLAEKVGVPYYSF 156

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +  S    +A +A ++A+ + VD L+IDTAGRLH +  LM  + ++   +K      P  
Sbjct: 157 DEAS-PVEIATKALERAKKEGVDYLLIDTAGRLHIDEELMEELKRIKEAVK------PSE 209

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V+ V DA  GQ ALR ++ FH     TG+I+TKMDG ARGG  + +     +P+ F+GVG
Sbjct: 210 VIYVADAMQGQEALRALKAFHESITLTGVILTKMDGDARGGVALSVKEAIGVPIKFVGVG 269

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E + D+E F     +  I G  D
Sbjct: 270 EKLEDIEIFYPDRIAQRILGLGD 292


>gi|260432705|ref|ZP_05786676.1| signal recognition particle protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416533|gb|EEX09792.1| signal recognition particle protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 502

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 140/269 (52%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+++  +   + V+      Q+V+  V + +   L     P     
Sbjct: 38  LLEADVSLPVARAFVKKVQEQATGQAVTKSITPGQQVVKIVHDALVDTLRGEEDPGKLKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT  GKL+K++ +  G KV++A+ D +R AA+DQL +   +  
Sbjct: 98  DNPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKKVLMASLDVYRPAAMDQLAVLGTQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G     +A  A +QA     DV ++DTAGRLH + +LM  + ++  V+    
Sbjct: 158 VDTLPIVPGQKPVDIAKRAKQQATLGGYDVYMLDTAGRLHIDEVLMDEVEQVRNVVD--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ A+   E F A  G +G+++T+MDG  RGG  + +      P+
Sbjct: 215 ---PRETLLVVDGLTGQVAVEVAEEFDAKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F     +  I G  D
Sbjct: 272 RFVGLGEKMDALETFEPDRIAGRILGMGD 300


>gi|332981635|ref|YP_004463076.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mahella
           australiensis 50-1 BON]
 gi|332699313|gb|AEE96254.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mahella
           australiensis 50-1 BON]
          Length = 438

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 149/279 (53%), Gaps = 16/279 (5%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96
           V+E + D+   L+ +D+  AV ++ V ++  K   + V       Q+V+  V+E + +++
Sbjct: 23  VKEAMRDVRMALLEADVNYAVVKEFVNKVTEKAIGQGVLESLTPGQQVIKIVNEQLIELM 82

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
                   W  S  P VI++VG+ G GKTT   KL+  ++  G   +L A D +R AA+ 
Sbjct: 83  GSSQSKIKW-ASAPPTVIMMVGLQGSGKTTTSAKLAGYLAKQGKNPLLVACDIYRPAAVK 141

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL+I   + +      E G++  A++ +A + A+    DV+I+DTAGRLH +  +M  + 
Sbjct: 142 QLQIVGQKVNIPVFSLE-GANPVAISQQALEYAKKHSNDVVILDTAGRLHIDDEMMQELE 200

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +     +   H P  +L V+DA TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 201 DI-----KSSVH-PDEILLVVDAMTGQDAVNVAKNFNERLAIDGVVLTKLDGDTRGGAAL 254

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +      P+ F+G+GE ++DLEPF     ++ I G  D
Sbjct: 255 SVKAVTGKPIKFVGMGEKLDDLEPFHPDRIASRILGMGD 293


>gi|84394289|ref|ZP_00993014.1| signal recognition particle protein [Vibrio splendidus 12B01]
 gi|86146312|ref|ZP_01064636.1| signal recognition particle protein [Vibrio sp. MED222]
 gi|84375092|gb|EAP92014.1| signal recognition particle protein [Vibrio splendidus 12B01]
 gi|85835791|gb|EAQ53925.1| signal recognition particle protein [Vibrio sp. MED222]
          Length = 464

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 154/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D ++E L ++   L+ +D+ + V +  V+ +  K  A
Sbjct: 2   FDNLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFVKRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPH-VILVVGVNGVGKTTVIGK 130
             V V + L    E I  +   L           D + +P  VIL+ G+ G GKTT +GK
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQAELEAVMGESNEALDLAAQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK +++   K V++ + D +R AAI QL+  A     DF  S        +A  A   A
Sbjct: 120 LSKLLTERDKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSSADQKPLDIANAAIDHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVLI+DTAGRL  +  +M  I ++   +K      P   L V+DA TGQ+A    
Sbjct: 180 KKKFYDVLIVDTAGRLAIDEEMMGEIKELHTAIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFGDTLPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|227878849|ref|ZP_03996756.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus crispatus
           JV-V01]
 gi|227861597|gb|EEJ69209.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus crispatus
           JV-V01]
          Length = 476

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  ++ +  +   K+V       Q+V+  V+E + KM+   + P N   
Sbjct: 39  LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            H P +I++VG+ G GKTT +GKL+  +      + +L AGD +R AA+DQLK   D+  
Sbjct: 98  KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGDQLK 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D A +  +   +A+  K D ++IDTAGRL  +  LM  + ++ +V     
Sbjct: 158 VPVYSEDGEKDVAKIVQDGLAEAEKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAH--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P ++L V+DA TGQ A    + F      TG+I+TK+DG  RGG  + I      P+
Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDITGVILTKLDGDTRGGAALSIRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G GE ++DL+ F     ++ I G  D
Sbjct: 272 LFTGQGEKLSDLDVFHPDRMASRILGMGD 300


>gi|7799381|emb|CAB90997.1| signal recognition particle 54Kd homolog [Buchnera aphidicola]
          Length = 451

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 166/306 (54%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  II+  RL ++ ++E   E+   L+ +D+ ++V +K +E +  K   
Sbjct: 2   FNNLTQRLSDSLKKIINKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSIG 61

Query: 77  KDVSVQRVLYDVSELI----HKMLMPL-SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130
            +++  + L    E I    H+++  +  K  + +FS   P VILVVG+ G GKTT + K
Sbjct: 62  HEIN--KSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIEPPAVILVVGLQGSGKTTSLAK 119

Query: 131 L-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L     +    K+++ + DT+R+AAI+QLKI +D+   DF  S+  +    +   A K A
Sbjct: 120 LGKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFESDKHNTPIEITKNAIKYA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL+IDTAGRLH +  +M  I ++  + K ++       L ++D+  GQ+A+   
Sbjct: 180 KLKLYDVLLIDTAGRLHIDKKMMNEIQQIQVISKAIE------TLLIVDSMMGQDAINMA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F+     +G+I+TK DG +R G  + +      P+ F+G GE I  LEPF  +  +  
Sbjct: 234 KIFNNDLLISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMND 299


>gi|114564085|ref|YP_751599.1| signal recognition particle protein [Shewanella frigidimarina NCIMB
           400]
 gi|114335378|gb|ABI72760.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           frigidimarina NCIMB 400]
          Length = 457

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 155/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +D ++E L ++   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLSDRLSRTLKNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFVNSVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + K +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQNELEKAMGEANEALDL-AAIPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +     K V++ + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 GKFLRTRHKKSVLVVSADVYRPAAIKQLETLATEVEVEFFPSDVSQKPVDIAKAAINYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K +DV+I+DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFIDVVIVDTAGRLHVDEAMMDEIKQL---------HATVNPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     +
Sbjct: 232 TAKAFNEALPLTGVILTKVDGDARGGAALSIRSITGKPIKFLGVGEKTDALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|18394225|ref|NP_563970.1| ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA
           SUBUNIT); 7S RNA binding / GTP binding / mRNA binding /
           nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|586036|sp|P37106|SR541_ARATH RecName: Full=Signal recognition particle 54 kDa protein 1;
           Short=SRP54
 gi|5103829|gb|AAD39659.1|AC007591_24 Identical to gb|L19997 signal recognition particle 54 kDa subunit
           (Srp54-1) from Arabidopsis thaliana. ESTs gb|T88590 and
           gb|T20603 come from this gene
 gi|12745001|gb|AAK06880.1|AF344329_1 unknown protein [Arabidopsis thaliana]
 gi|304111|gb|AAA19728.1| signal recognition particle 54 kDa subunit [Arabidopsis thaliana]
 gi|21592315|gb|AAM64266.1| signal recognition particle 54 kDa protein 2 (SRP54), putative
           [Arabidopsis thaliana]
 gi|62320715|dbj|BAD95382.1| putative signal recognition particle 54 kDa subunit [Arabidopsis
           thaliana]
 gi|332191180|gb|AEE29301.1| Signal recognition particle protein 1 [Arabidopsis thaliana]
          Length = 479

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 145/290 (50%), Gaps = 19/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLY 86
           II  + L+D + E +   L++SD+   + +K+   +        L   + K + +++ ++
Sbjct: 22  IIDEKVLNDFLNE-ITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
              EL  +ML P  KP       +P V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  --KELC-RMLDP-GKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ A DQLK  A +    F  S   SD   +A E   + + +K D++I+DT+GR  
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHK 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
             + L     +M +V +  +P     V+ V+D++ GQ A  Q E F        +I+TKM
Sbjct: 197 QAASLFE---EMRQVAEATEPDL---VIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKM 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           DG A+GGG +  V   K PV F+G GE +++ E F  K F + + G  D+
Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDW 300


>gi|218710520|ref|YP_002418141.1| Signal recognition particle protein [Vibrio splendidus LGP32]
 gi|218323539|emb|CAV19739.1| Signal recognition particle protein [Vibrio splendidus LGP32]
          Length = 470

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 154/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D ++E L ++   L+ +D+ + V +  V+ +  K  A
Sbjct: 8   FDNLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFVKRV--KEGA 65

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPH-VILVVGVNGVGKTTVIGK 130
             V V + L    E I  +   L           D + +P  VIL+ G+ G GKTT +GK
Sbjct: 66  VGVEVSKSLTPGQEFIKIVQAELEAVMGESNEALDLAAQPPAVILMAGLQGAGKTTSVGK 125

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK +++   K V++ + D +R AAI QL+  A     DF  S        +A  A   A
Sbjct: 126 LSKLLTERDKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSSADQKPLDIANAAIDHA 185

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVLI+DTAGRL  +  +M  I ++   +K      P   L V+DA TGQ+A    
Sbjct: 186 KKKFYDVLIVDTAGRLAIDEEMMGEIKELHTAIK------PVETLFVVDAMTGQDAANTA 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ 
Sbjct: 240 KAFGDTLPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASR 299

Query: 310 ITGCLD 315
           I G  D
Sbjct: 300 ILGMGD 305


>gi|86159726|ref|YP_466511.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776237|gb|ABC83074.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 550

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 156/317 (49%), Gaps = 24/317 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            +  ++KGF +   KLK G T+I +   +DD +R+ +   L+ +D+   V ++ V  +  
Sbjct: 1   MLETVSKGFKAARNKLK-GRTEI-TPEVVDDALRD-IRVSLLEADVSFDVVKRFVARVRE 57

Query: 73  KRYAKDVSVQ--------RVLYD--VSELIHKMLMPLSKPFNWDFSH----RPHVILVVG 118
           K   + V  +        RV       ++ H  L  L  P +         RP  I++VG
Sbjct: 58  KAIGEVVETKIKTEKGQLRVTPQDHFVKICHDELEALMGPVDTSLRQGERGRPTGIMMVG 117

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT  GK++ ++   G +VML A D +R AA+DQLK+  +R     V  E G   
Sbjct: 118 LQGSGKTTTAGKIANRLLKDGKQVMLVAADVYRPAAVDQLKVLGERLGVP-VFHEPGVSP 176

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +   AF+ AQ +  + +I DTAGRL  +  LM  +  +   +      AP ++L V D
Sbjct: 177 PDMCRHAFEAAQREHRNAVIYDTAGRLAIDDELMTELENIKANV------APENILLVAD 230

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A++    F       G I+TK+DG ARGG  + I      P+ FLG+GE ++ L
Sbjct: 231 AMIGQDAVKTASEFDRRLAIDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGEALDRL 290

Query: 299 EPFVAKDFSAVITGCLD 315
           E F  +  ++ I G  D
Sbjct: 291 EEFRPEGLASRILGFGD 307


>gi|170725614|ref|YP_001759640.1| signal recognition particle protein [Shewanella woodyi ATCC 51908]
 gi|169810961|gb|ACA85545.1| signal recognition particle protein [Shewanella woodyi ATCC 51908]
          Length = 457

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 154/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSRSLKNISGRGRLTEDNVKETLREVRMALLEADVALPVVRDFVNSVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   +   +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELENAMGEANEALDLS-AQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +   K V++ + D +R AAI QL+  A     +F  S++      +   A   A+
Sbjct: 121 SKFLREREKKSVLVVSADVYRPAAIKQLETLATEVEVEFFPSDVSQKPIDIVNAAMAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K +DV+I+DTAGRLH +  +M  I  +         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFIDVVIVDTAGRLHVDESMMDEIKAL---------HAAVNPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFYPDRVA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|197123778|ref|YP_002135729.1| signal recognition particle protein [Anaeromyxobacter sp. K]
 gi|196173627|gb|ACG74600.1| signal recognition particle protein [Anaeromyxobacter sp. K]
          Length = 550

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 156/317 (49%), Gaps = 24/317 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            +  ++KGF +   KLK G T+I +   +DD +R+ +   L+ +D+   V ++ V  +  
Sbjct: 1   MLETVSKGFKAARNKLK-GRTEI-TPEVVDDALRD-IRVSLLEADVSFDVVKRFVARVRE 57

Query: 73  KRYAKDVSVQ--------RVLYD--VSELIHKMLMPLSKPFNWDFSH----RPHVILVVG 118
           K   + V  +        RV       ++ H  L  L  P +         RP  I++VG
Sbjct: 58  KAIGEVVETKVKTEKGQLRVTPQDHFVKICHDELEALMGPVDTSLRQGERGRPTGIMMVG 117

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT  GK++ ++   G +VML A D +R AA+DQLK+  +R     V  E G   
Sbjct: 118 LQGSGKTTTAGKIANRLLKDGKQVMLVAADVYRPAAVDQLKVLGERLGVP-VFHEPGVSP 176

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +   AF+ AQ +  + +I DTAGRL  +  LM  +  +   +      AP ++L V D
Sbjct: 177 PDMCRHAFEAAQREHRNAVIYDTAGRLAIDDELMTELENIKANV------APENILLVAD 230

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A++    F       G I+TK+DG ARGG  + I      P+ FLG+GE ++ L
Sbjct: 231 AMIGQDAVKTATEFDRRLAIDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGEALDRL 290

Query: 299 EPFVAKDFSAVITGCLD 315
           E F  +  ++ I G  D
Sbjct: 291 EEFRPEGLASRILGFGD 307


>gi|296113557|ref|YP_003627495.1| signal recognition particle subunit FFH/SRP54 [Moraxella
           catarrhalis RH4]
 gi|295921251|gb|ADG61602.1| signal recognition particle subunit FFH/SRP54 [Moraxella
           catarrhalis RH4]
 gi|326568604|gb|EGE18675.1| signal recognition particle protein [Moraxella catarrhalis BC7]
 gi|326568729|gb|EGE18799.1| signal recognition particle protein [Moraxella catarrhalis BC8]
 gi|326572598|gb|EGE22587.1| signal recognition particle protein [Moraxella catarrhalis CO72]
 gi|326574194|gb|EGE24142.1| signal recognition particle protein [Moraxella catarrhalis
           101P30B1]
 gi|326574979|gb|EGE24908.1| signal recognition particle protein [Moraxella catarrhalis O35E]
          Length = 514

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 152/291 (52%), Gaps = 32/291 (10%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIV---------EELLTKRYAKDVSVQRVLYD-V 88
           +D +++ L ++   L+ +D+ + VA+  V         +E+L K  A   +  +++YD +
Sbjct: 24  EDNIKDTLREVRMALLEADVALPVARNFVARVKEQALGQEVL-KELAPGQAFVKIVYDEL 82

Query: 89  SELI---HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVML 144
           +E++   ++ L    KP        P V L+ G+ G GKTT  GKL+K + D    KVML
Sbjct: 83  TEMMGSANQTLEMTGKP--------PLVYLLAGLQGAGKTTTAGKLAKFLQDKQNKKVML 134

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            + D +R AAI QL+  A +  A FV S    +   +A  A  +A+ +  D+LIIDTAGR
Sbjct: 135 VSADIYRPAAIKQLEQVAAQVGASFVPSTTDENPIDIARRAIDEAKLQYQDILIIDTAGR 194

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LH +  +M+ I ++ + +       P   L V+D+ TGQ+A    + F+     TG+I+T
Sbjct: 195 LHIDDEMMSEIKELTKAVN------PVETLFVVDSMTGQDAANTAKAFNDALPLTGVILT 248

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           K DG ARGG  + +      P+ FLG GE +  LE F  +  +  I G  D
Sbjct: 249 KTDGDARGGAALSVRAITGKPIKFLGRGEKLEALELFHPERIAQRILGMGD 299


>gi|300867755|ref|ZP_07112400.1| signal recognition particle subunit FFH/SRP54 (srp54) [Oscillatoria
           sp. PCC 6506]
 gi|300334338|emb|CBN57572.1| signal recognition particle subunit FFH/SRP54 (srp54) [Oscillatoria
           sp. PCC 6506]
          Length = 483

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 146/292 (50%), Gaps = 23/292 (7%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D IS   + + +RE +   L+ +D+ + V +  + E+  K    +V           +++
Sbjct: 20  DKISDANIQEALRE-VRRALLEADVNLQVVKDFIAEVAVKAQGAEVISGVRPDQQFIKIV 78

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           YD  EL+ +++   + P     S  P ++L+ G+ G GKTT   KL+ ++       +L 
Sbjct: 79  YD--ELV-RVMGETNSPLAIADSA-PTIVLMAGLQGTGKTTASAKLALQLRKQNRSTLLV 134

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIG--SDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           A D +R AAIDQL     +   D    E+G  +D   +A +   +A+   VD +I+DTAG
Sbjct: 135 ATDIYRPAAIDQLITLGKQI--DVPVFELGKDTDPVEIARQGIDRARELGVDTVIVDTAG 192

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RL  +  +MA + ++   ++      PH  L V+DA TGQ A      FH   G TG I+
Sbjct: 193 RLQIDQDMMAELARIKETIQ------PHETLLVVDAMTGQEAANLTRTFHDQIGITGAIL 246

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TKMDG +RGG  + +      P+ F+GVGE +  L+PF     ++ I G  D
Sbjct: 247 TKMDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298


>gi|5912315|emb|CAB56097.1| cell division protein [Rickettsia rickettsii]
          Length = 136

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 93/136 (68%), Gaps = 2/136 (1%)

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++AY   +++  + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HSVL V+
Sbjct: 2   ASVAYRGMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VI 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   QVE F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I D
Sbjct: 61  DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DF+  I G 
Sbjct: 121 LKIFNQHDFARNIVGL 136


>gi|326559559|gb|EGE09973.1| signal recognition particle protein [Moraxella catarrhalis 7169]
 gi|326567759|gb|EGE17865.1| signal recognition particle protein [Moraxella catarrhalis BC1]
          Length = 514

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 152/291 (52%), Gaps = 32/291 (10%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIV---------EELLTKRYAKDVSVQRVLYD-V 88
           +D +++ L ++   L+ +D+ + VA+  V         +E+L K  A   +  +++YD +
Sbjct: 24  EDNIKDTLREVRMALLEADVALPVARNFVARVKEQALGQEVL-KELAPGQAFVKIVYDEL 82

Query: 89  SELI---HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVML 144
           +E++   ++ L    KP        P V L+ G+ G GKTT  GKL+K + D    KVML
Sbjct: 83  TEMMGSANQTLEMTGKP--------PLVYLLAGLQGAGKTTTAGKLAKFLQDKQNKKVML 134

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            + D +R AAI QL+  A +  A FV S    +   +A  A  +A+ +  D+LIIDTAGR
Sbjct: 135 VSADIYRPAAIKQLEQVAAQVGASFVPSTTDENPIDIARRAIDEAKLQYQDILIIDTAGR 194

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LH +  +M+ I ++ + +       P   L V+D+ TGQ+A    + F+     TG+I+T
Sbjct: 195 LHIDDEMMSEIKELTKAVN------PVETLFVVDSMTGQDAANTAKAFNDALPLTGVILT 248

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           K DG ARGG  + +      P+ FLG GE +  LE F  +  +  I G  D
Sbjct: 249 KTDGDARGGAALSVRAITGKPIKFLGRGEKLEALELFHPERIAQRILGMGD 299


>gi|237753415|ref|ZP_04583895.1| signal recognition particle protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375682|gb|EEO25773.1| signal recognition particle protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 446

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 153/297 (51%), Gaps = 23/297 (7%)

Query: 30  EGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           E   + IS  R  D  +      +EL+  L++SD+   V ++++ E+  K     +    
Sbjct: 7   ESFQNAISKIRFQDDEKALKRALDELKKALLKSDVHYKVLKELLAEVEKKTKLAGIGKDS 66

Query: 84  VLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            L  + E ++ +L   + P N+ F      P ++L+ G+ G GKTT   KL+  +     
Sbjct: 67  FLNALKESLNTIL---TAPGNYGFIFAPKPPTIVLMAGLQGSGKTTTTAKLANYLKGKQK 123

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           KV+LAA D  R AA++QL+  A +   +F   E G  A  +A EA K+A     DVL++D
Sbjct: 124 KVLLAACDLQRLAAVEQLRQLAAQVEVEFFHLE-GKSAVEIATEAKKKAIDGLYDVLLVD 182

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  LM  +  +   +       P+ VL V+D+ +GQ+ ++    FH     +G
Sbjct: 183 TAGRLAIDEALMRELQSIKSAIN------PNEVLYVVDSLSGQDGVKSAATFHEKMDLSG 236

Query: 261 LIMTKMDGTARGGGLIPIVVTHK--IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++++K DG ++GG  I + + H+  IP+ F+GVGE I DLE F+ +     + G  D
Sbjct: 237 VVLSKFDGDSKGG--IALSIAHQLGIPLRFIGVGEKIADLEVFIPERIVGRLMGAGD 291


>gi|304404220|ref|ZP_07385882.1| signal recognition particle protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304347198|gb|EFM13030.1| signal recognition particle protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 449

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 146/285 (51%), Gaps = 21/285 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD---VSELIHKM 95
           +D V E + ++   L+ +D+   V +  V ++  K  A  + VQ+       V +++HK 
Sbjct: 13  EDDVNEAMREVRLALLEADVNFKVVKDFVAKV--KEQAVGIEVQKSFTPGMVVVDIVHKE 70

Query: 96  LMPL---SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           L+ L   S       S  P VIL+ G+ G GKTT   KL+K +     K +L AGD +R 
Sbjct: 71  LIELMGGSATQIAKASKPPTVILMAGLQGAGKTTTTAKLAKMLMKNNHKPLLIAGDIYRP 130

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           AAI QL++  ++  A      +G+D +   +A +  + A+A   D +I+DTAGRL  +  
Sbjct: 131 AAIKQLQVLGEQIGAQVFT--LGNDVSPVEIARQGLQHAKANSFDYVIVDTAGRLQIDEA 188

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  I ++  V++      P  VL V+DA TGQ A+   + FH     TG+++TK+DG  
Sbjct: 189 LMDEIKQIHAVVE------PDEVLLVVDAMTGQEAVNVAQSFHEQLELTGVVLTKLDGDT 242

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + +      P+ F+  GE I  LE F  +  ++ I G  D
Sbjct: 243 RGGAALSVKAVTGCPIKFVATGEKIEPLEAFHPERMASRILGMGD 287


>gi|269925893|ref|YP_003322516.1| signal recognition particle protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789553|gb|ACZ41694.1| signal recognition particle protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 441

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 137/272 (50%), Gaps = 20/272 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPLSKPFNWD 106
           L+ +D+ + VA++ + ++  K     +S QR L  ++      +++H+ L+ L       
Sbjct: 38  LMEADVNLKVAKQFINQIKEK-----ISEQRALESLTPAQQIIQVVHQELVSLLGSDQCK 92

Query: 107 F---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
               S  P + ++VG+ G GKTT   KL+  +   G + +L A D +R AAI QL+    
Sbjct: 93  LETASTPPTIYMLVGLQGSGKTTTAAKLALYLRKQGARPLLVAADIYRPAAIKQLQTLGG 152

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
             +              +A  A   A+   +  +I+DTAGRLH +  +MA   +++RV  
Sbjct: 153 SLNIPVYSEGTSVPPENIATNAIDFAKQSSLTHVILDTAGRLHIDEAMMA---ELVRVR- 208

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             D  +P  +L V+DA TGQ A++  E FH   G TG+IMTK+DG ARGG  + I     
Sbjct: 209 --DKVSPTEILLVVDAMTGQEAVKVAEQFHNTLGVTGVIMTKLDGDARGGAALSIRAVTG 266

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +P+  +G GE  +  EP +    ++ I G  D
Sbjct: 267 VPIKMIGTGERPDAFEPLIPDRLASRILGLGD 298


>gi|55274300|gb|AAV49042.1| signal recognition particle GTPase [Azospirillum lipoferum]
          Length = 276

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 102/148 (68%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W  KL +G + +S KL +GIT I + R+LDD   EELE+LLI +D+G A A K+  EL  
Sbjct: 106 WFAKLKEGLSKSSSKLTDGITSIFTKRKLDDEALEELEELLITADLGPATAAKVTAELAR 165

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            R+ K+VS + V   ++  + K++ P+++P   D + +PHVILVVGVNG GKTT IGKL+
Sbjct: 166 TRFGKEVSPEEVKSTLAAEVAKIVTPVARPLVLDPALKPHVILVVGVNGTGKTTTIGKLA 225

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           ++    G  VMLAAGDTFR+AA+ QLKI
Sbjct: 226 RQFKAEGKSVMLAAGDTFRAAAVSQLKI 253


>gi|298370390|ref|ZP_06981706.1| signal recognition particle protein [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281850|gb|EFI23339.1| signal recognition particle protein [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 456

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 152/286 (53%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D ++E L ++   L+ +D+ ++V ++ V  +  K   ++V+      Q  +  V++ + 
Sbjct: 24  EDNIKEALREVRLALLEADVALSVVKEFVNNVKEKALGQEVAGSLTPDQAFIGVVNQALI 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           +++   +K  +   +  P V+L+ G+ G GKTT +GKL++ + ++   KV++ + D +R 
Sbjct: 84  ELMGKENKTLDLSVAP-PAVVLMAGLQGAGKTTTVGKLARLLKNEQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S        +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGIDFFPSNSNQKPVEIATAAIDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+I+TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVVDAMLGQDAVNTAQAFNEALPLTGVILTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GVGE I  LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRQITGKPIKFIGVGEKITGLEPFHPDRIASRILGMGD 299


>gi|325968148|ref|YP_004244340.1| GTP-binding signal recognition particle SRP54 G- domain
           [Vulcanisaeta moutnovskia 768-28]
 gi|323707351|gb|ADY00838.1| GTP-binding signal recognition particle SRP54 G- domain
           [Vulcanisaeta moutnovskia 768-28]
          Length = 446

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 140/274 (51%), Gaps = 14/274 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKD------VSVQRVLYDVSELIHKMLMPLSK 101
           E++ +L+R+D+   V   I +  + +R+ ++       S + +LY + + + K L     
Sbjct: 34  EIQRILLRADVSADVVSSITK-TIEERFRQEKPPQGITSKEFLLYLLYQELVKALGGEEV 92

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           P + + S RP+ ++++G+ G GKTT   KL++      LKV L   DT+R  A  QLK  
Sbjct: 93  P-SVNISKRPYKLMLIGIEGSGKTTTAAKLARFYIKRNLKVGLIETDTYRPGAYYQLKQL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A++ +A F   E   D  A+     +  Q  KVD++IIDTAGR H N   +    K I  
Sbjct: 152 AEKVNALFYGEEDSKDPIAILRHGLEYMQRNKVDLIIIDTAGR-HRNEEELLKEAKAI-- 208

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
               D   P  V+ V+DAT G+ A  Q E F        + +TKMD TA+ GG +  V+ 
Sbjct: 209 ---YDEAKPDEVMLVIDATIGRQAAAQTEAFMKYVPIHSVFLTKMDSTAKAGGALTSVIR 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               + F+G+GE I+++E F A  F + + G  D
Sbjct: 266 SGARIKFIGIGEDIDEVEIFDANKFVSRLLGMGD 299


>gi|269468630|gb|EEZ80274.1| signal recognition particle, subunit SRP54 [uncultured SUP05
           cluster bacterium]
          Length = 474

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 112/195 (57%), Gaps = 7/195 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V++V G+ G GKTT I KL++ + +    KV++ + D +R AAI QL++ A +  
Sbjct: 97  TQPPAVVMVAGLQGAGKTTSIAKLARYLKERENKKVLVVSADVYRPAAIKQLEVLAGQVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S I      +   A K AQ +  DVL++DTAGRLH +  +M   G++  + K+++
Sbjct: 157 VDFYPSTINDKPEKIVASAKKHAQKQFFDVLLVDTAGRLHVDEAMM---GEIKALQKKVN 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P      L V+D+ TGQ+A    + F      TG+I+TK DG ARGG  + +      P+
Sbjct: 214 PI---ETLFVVDSMTGQDAAHTAKAFADALPLTGVILTKTDGDARGGAALSVRHITGKPI 270

Query: 287 YFLGVGEGINDLEPF 301
            FLGVGE I+ LEPF
Sbjct: 271 KFLGVGEKIDALEPF 285


>gi|89091990|ref|ZP_01164945.1| signal recognition particle GTPase [Oceanospirillum sp. MED92]
 gi|89083725|gb|EAR62942.1| signal recognition particle GTPase [Oceanospirillum sp. MED92]
          Length = 470

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + +  +    +L +D ++  L ++   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLSERLTQTLRSVTGQAKLTEDNIKGTLREVRMALLEADVALPVVKEFVNSVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V+E + K++   ++  N   +  P V+++ G+ G GKTT + KL
Sbjct: 62  TEVTKSLTPGQVFVKIVNEEMIKVMGEANEKLNLAATP-PAVVMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            + + +    KV++ + D +R AAI QL+  A     DF  S    D   +A  A   A+
Sbjct: 121 GRHLREREKKKVLVVSADVYRPAAIKQLETLAGEVEVDFFPSTADQDPVDIANAAIAHAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 IQHHDVVLVDTAGRLHVDEDMMGEIKRLHEAVN------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V   TG+++TK DG ARGG  + +      P+ FLGVGE ++ LEPF     ++ I
Sbjct: 235 AFNEVLPLTGVVLTKTDGDARGGAALSVRQITGKPIKFLGVGEKVDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|146297160|ref|YP_001180931.1| signal recognition particle protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410736|gb|ABP67740.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 443

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 155/308 (50%), Gaps = 24/308 (7%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F+S S KL++    +     ++ + + D ++E ++  L+ +D+   V +  +  +  K  
Sbjct: 2   FSSLSEKLQDVFKKLRGKGKLTEKDIKDAMKE-VKLALLEADVNYKVVKDFINTVTQKAV 60

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTV 127
            ++V       Q+V+    ++++  ++ L    +   +  P    + ++VG+ G GKTT 
Sbjct: 61  GEEVLESLTPAQQVI----KIVYDEMVNLLGGNDTKLTFSPSGFSIYMMVGLQGSGKTTT 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+  +   G K +L A D +R AAI QL++ A++            DA  +A E   
Sbjct: 117 AGKLAALLKKQGKKPLLIACDIYRPAAIKQLEVVAEKVGVSCYADYDKKDAVKIAVEGVN 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A++ + D+ I+DTAGRLH N  LM  +  +   +K      P  +L VLDA TGQ+A+ 
Sbjct: 177 FAKSNRFDIAIVDTAGRLHINEELMNELVAIKSAIK------PTEILLVLDAMTGQDAVN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             E F+   G  G+IMTK+DG  RGG  + +      P+ F G+GE + DLE F     +
Sbjct: 231 VAEAFNNQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGMGEKMEDLEVFYPDRMA 290

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 291 SRILGMGD 298


>gi|260912750|ref|ZP_05919236.1| signal recognition particle protein [Pasteurella dagmatis ATCC
           43325]
 gi|260633128|gb|EEX51293.1| signal recognition particle protein [Pasteurella dagmatis ATCC
           43325]
          Length = 458

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 160/307 (52%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +  + ++  K  A
Sbjct: 2   FENLSDRLSKTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINKV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E +  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  IGVEVNKSLTPGQEFVKIVQAELEVAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + +    KV++ + D +R AAI QL+  A    A F  S++  +  A+A  A  +
Sbjct: 119 KLAKFLKERHKKKVLVVSADVYRPAAIKQLETLAQAVGASFFPSDVSQNPVAIAQAALAE 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRLH +  +M  I ++   L       P   L  +DA TGQ+A   
Sbjct: 179 AKLKFYDVLIVDTAGRLHVDGEMMDEIKQIHAALN------PIETLFTVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF  +  ++
Sbjct: 233 AKAFNEALPLTGVVLTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPERVAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|238852592|ref|ZP_04643002.1| signal recognition particle protein [Lactobacillus gasseri 202-4]
 gi|238834738|gb|EEQ26965.1| signal recognition particle protein [Lactobacillus gasseri 202-4]
          Length = 476

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 156/306 (50%), Gaps = 20/306 (6%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + S +L++ + ++     IS   ++D  RE +   L+ +D+   V +  ++++  +  
Sbjct: 3   FENLSERLQKALKNLTGKGKISEADINDASRE-IRLALLEADVNFKVVKDFIKKIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V + + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVDDELTKMMGEEAVSLNKS-QHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+   M +   + +L AGD +R AAIDQLK    + +   V SE   + A +     ++A
Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIDQLKQIGQQLNVP-VYSEDNQNVAEIVKHGLEEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM  + ++  V        P + L V+DA TGQ A +  
Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDELKRVTAVAH------PDNTLLVVDAMTGQAATQVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+I+TK+DG  RGG  + I     +P+ F G GE + DL  F     ++ 
Sbjct: 234 EGFNNDLDLTGIILTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|320323179|gb|EFW79268.1| signal recognition particle protein [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 458

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 153/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +I   +L+ D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVIGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH +  +M  I  +    K      P   L V+DA TGQ+A    
Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|296817061|ref|XP_002848867.1| signal recognition particle protein [Arthroderma otae CBS 113480]
 gi|238839320|gb|EEQ28982.1| signal recognition particle protein [Arthroderma otae CBS 113480]
          Length = 535

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 150/301 (49%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   ++D+  S  +D    D + +E+   L+ +D+ V + Q++ + +        +   
Sbjct: 9   RINAAVSDLTRSNTVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQLPSIPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P ++PF      + +VI++VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--QLV-ALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D   ++ E   + + ++ 
Sbjct: 125 YQTKGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVIVSSEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR      L A + ++   +K      P   + VLD+T GQ A  Q   F +
Sbjct: 185 DIIIVDTSGRHRQEEDLFAEMTQIQAAIK------PDQTIMVLDSTIGQAAESQSAAFKS 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V   + P+ FLG GE + DLE F  + F   + G  
Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPQPFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|20095048|ref|NP_614895.1| Signal recognition particle GTPase [Methanopyrus kandleri AV19]
 gi|23822175|sp|Q8TUY9|SRP54_METKA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|19888324|gb|AAM02825.1| Signal recognition particle GTPase [Methanopyrus kandleri AV19]
          Length = 447

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 127/236 (53%), Gaps = 10/236 (4%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           R++Y+  EL+  +    ++  + D S   +VI++VG+ G+GKTT   KL++ +   G +V
Sbjct: 75  RIVYE--ELVELLGGEKTEGLDIDLSRDVNVIMLVGLYGMGKTTTAAKLARYLQRKGYRV 132

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
            L   D +R AA +QL+  A+         ++  DA  +A +   +A   + DV+I+DTA
Sbjct: 133 GLVGADPYRPAAGEQLRQLAEEVDVPVHVEDV-DDAVEMAVKGV-EALKDECDVVIVDTA 190

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GR   +  L+  + +M   ++      PH VL VLDAT GQ A    E FH     TG++
Sbjct: 191 GRDRLSEDLIDELREMAERIE------PHEVLLVLDATVGQKAGDHAEAFHEAVQLTGVV 244

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           +TK+D  A+GGG +  V     P+ F+G GE ++DLE F  + F A + G  D  E
Sbjct: 245 ITKLDTAAKGGGALSAVARTGAPIKFVGTGERVDDLEEFNPRSFVARLLGIGDIDE 300


>gi|5912331|emb|CAB56072.1| cell division protein [Rickettsia helvetica]
          Length = 136

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 2/136 (1%)

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++AY A +++  + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HSVL ++
Sbjct: 2   ASVAYRAMEESIKQNIDILFIDTAGRLHNKKNLMDELAKIVKVIKKLDENAPTHSVL-II 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   QVE F+     TGLI+TK+DG+A+ G ++ +V    +PVYF+ +GE I D
Sbjct: 61  DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPVYFISIGEKIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DF+  + G 
Sbjct: 121 LKIFNRHDFAKSLVGL 136


>gi|302306335|ref|NP_982582.2| AAR041Wp [Ashbya gossypii ATCC 10895]
 gi|299788468|gb|AAS50406.2| AAR041Wp [Ashbya gossypii ATCC 10895]
          Length = 514

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +V++ VG+ G GKTT   KL+   S  G KV L   DTFR+ A DQLK  A +    F
Sbjct: 104 KSNVVMFVGLQGAGKTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIKAKIPF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S   ++   +A +   + + ++ +++I+DT+GR H    L     +M+ + + + P+ 
Sbjct: 164 YGSYTETNPVRVAADGVAKFKKERFEIIIVDTSGRHHQEDALFQ---EMVEIAQEVKPN- 219

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
               + VLDA+ GQ A +Q   F   A    +I+TKMDG A+GGG I  V   K PV F+
Sbjct: 220 --QTIMVLDASIGQAAEQQSRAFKEAADFGAIILTKMDGHAKGGGAISAVAATKTPVIFI 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE ++D E F  K F + + G  D
Sbjct: 278 GTGEHVHDFEKFSPKSFVSKLLGIGD 303


>gi|121729492|ref|ZP_01682099.1| signal recognition particle protein [Vibrio cholerae V52]
 gi|121628611|gb|EAX61088.1| signal recognition particle protein [Vibrio cholerae V52]
          Length = 404

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A+    DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFXPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|323493645|ref|ZP_08098766.1| signal recognition particle protein [Vibrio brasiliensis LMG 20546]
 gi|323312168|gb|EGA65311.1| signal recognition particle protein [Vibrio brasiliensis LMG 20546]
          Length = 462

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D ++E L ++   L+ +D+ + V +  ++ +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFIKRV--KEAA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQNELEGVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK +++   K V++ + D +R AAI QL+  A     DF  S        +A  A   
Sbjct: 119 KLSKLLTERDKKKVLVVSADVYRPAAIKQLETLATDVGVDFFPSSADQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVL++DTAGRL  +  +MA I  +   +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLVVDTAGRLAVDEQMMAEIQDLHSAIN------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|294783942|ref|ZP_06749264.1| signal recognition particle protein [Fusobacterium sp. 1_1_41FAA]
 gi|294479754|gb|EFG27533.1| signal recognition particle protein [Fusobacterium sp. 1_1_41FAA]
          Length = 444

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 6/207 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P +I++ G+ G GKTT   KL+K +     K++L   D +R AAI QL++   +   D
Sbjct: 98  RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E   D   +A  A ++A+      +I+DTAGRLH +  LM  + ++ R +K     
Sbjct: 158 VYSEEDNKDVVGIATRAIEKAKEINATYMIVDTAGRLHVDETLMNELKELKRAIK----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +L V+DA  GQ+A+   E F+      G+I+TK+DG  RGG  + I      P+ F
Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE +ND+E F      + I G  D
Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298


>gi|302896050|ref|XP_003046905.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256727833|gb|EEU41192.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 518

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 144/297 (48%), Gaps = 18/297 (6%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS------ 80
           ++   + ++   + LD+    E+   L+ +D+ V +  ++ + + T    K++       
Sbjct: 9   RINAAVNNLTREQNLDEKAGPEICAALLEADVNVRLVGQLRKSIRTTVNFKELPPAVNKK 68

Query: 81  --VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
             +Q+ ++D  EL+ K++ P +  F      +  VI+ VG+ G GKTT   KL++     
Sbjct: 69  RLIQKAVFD--ELV-KLVDPHADSFRPK-KGKSSVIMFVGLQGAGKTTTCTKLARHYQSR 124

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G K  L   DTFR+ A DQLK  A +    +  S   +D A +A    +Q +  + +V+I
Sbjct: 125 GFKSCLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVARAGVEQFKKDRFEVII 184

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DT+GR    S L     +MI +   +    P   + VLDA+ GQ A  Q + F   A  
Sbjct: 185 VDTSGRHRQESALFQ---EMIDIQNAIQ---PDETIMVLDASIGQQAESQAKAFKEAADF 238

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             +I+TK DG A GGG I  V     P+ F+G GE + DLE F  + F   + G  D
Sbjct: 239 GAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDLEKFAPQQFVQKLLGMGD 295


>gi|254510575|ref|ZP_05122642.1| signal recognition particle protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221534286|gb|EEE37274.1| signal recognition particle protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 500

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 140/269 (52%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA++ V+++  +   + V+      Q+V+  V + +   L     P     
Sbjct: 38  LLEADVSLPVAREFVKKVQEQATGQAVTKSITPGQQVVKIVHDALVDTLRGEEDPGALKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT  GKL+K++ +  G KV++A+ D +R AA+DQL +   +  
Sbjct: 98  DNPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKKVLMASLDVYRPAAMDQLAVLGTQVG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G     +A  A +QA     DV ++DTAGRLH + +LM  + ++   +    
Sbjct: 158 VDTLPIVPGQSPVDIAKRAKQQATLGGYDVYMLDTAGRLHIDEVLMDEVEQVRNAVD--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ A+   E F A  G +G+++T+MDG  RGG  + +      P+
Sbjct: 215 ---PRETLLVVDGLTGQVAVEVAEEFDAKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F     +  I G  D
Sbjct: 272 RFVGLGEKMDALETFEPDRIAGRILGMGD 300


>gi|119357327|ref|YP_911971.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354676|gb|ABL65547.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium
           phaeobacteroides DSM 266]
          Length = 449

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 137/268 (51%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   VA+K+V+++  K   + V       Q ++  V++ +  ++    +P N   
Sbjct: 38  LLNADVNYKVAKKLVDDIREKSLGEQVLKSVSPAQMIVKIVNDELTDLMGGEHQPLNLSP 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
              P +I+V G+ G GKTT   KL+K++   G   ML A D +R AA+DQL+   ++   
Sbjct: 98  KKLPAIIMVAGLQGSGKTTFCAKLAKRLKKNGKNPMLVAADVYRPAAVDQLRTLGEQVDV 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V S    DA   A +  + A+    DV+IIDTAGRL  +  +MA    +   LK    
Sbjct: 158 P-VFSIDEQDAMKAAVKGLEAARLAAKDVVIIDTAGRLQIDEKMMAEAEALKHALK---- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+  GQ A+   + F+      G+++TK+DG ARGG  + I    + P+ 
Sbjct: 213 --PDELLFVVDSMMGQEAVNTAKAFNDRLDFDGVVLTKLDGDARGGAALSIRQVVEKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+ VGE ++DL+ F     +  I G  D
Sbjct: 271 FISVGEKVDDLDLFYPDRMAQRILGMGD 298


>gi|312883945|ref|ZP_07743662.1| signal recognition particle protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368403|gb|EFP95938.1| signal recognition particle protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 459

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 157/316 (49%), Gaps = 39/316 (12%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL ++ ++E L ++   L+ +D+ + V +  ++ +  K   
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEENIKETLREVRMALLEADVALPVVRDFIKRIKEKAVG 61

Query: 77  KDVS----------------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +VS                ++ V+ D +E+++    P            P VIL+ G+ 
Sbjct: 62  VEVSKSLTPGQEFIKIVQSELESVMGDTNEVLNLAAQP------------PAVILMAGLQ 109

Query: 121 GVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT +GKLSK +S+    KV++ + D +R AAI QL+  A     DF  S       
Sbjct: 110 GAGKTTSVGKLSKLLSEREKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTAEQKPI 169

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +A  A   A+ K  DVL++DTAGRL  +  +MA I ++   +       P   L V+DA
Sbjct: 170 DIANAAIDHAKRKFYDVLLVDTAGRLAIDEQMMAEIQELHTAIN------PVETLFVVDA 223

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ+A    + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LE
Sbjct: 224 MTGQDAANTAKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALE 283

Query: 300 PFVAKDFSAVITGCLD 315
           PF  +  ++ I G  D
Sbjct: 284 PFHPERVASRILGMGD 299


>gi|262172355|ref|ZP_06040033.1| signal recognition particle subunit Ffh SRP54 [Vibrio mimicus
           MB-451]
 gi|261893431|gb|EEY39417.1| signal recognition particle subunit Ffh SRP54 [Vibrio mimicus
           MB-451]
          Length = 461

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVRQQLETVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A+    DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAI------TPVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|255994441|ref|ZP_05427576.1| signal recognition particle protein [Eubacterium saphenum ATCC
           49989]
 gi|255993154|gb|EEU03243.1| signal recognition particle protein [Eubacterium saphenum ATCC
           49989]
          Length = 442

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 160/302 (52%), Gaps = 23/302 (7%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A ESLS   K+ + F+    KLK   T  +S + +D  +RE ++  L+ +D+   + ++
Sbjct: 1   MAFESLS--EKMQRAFS----KLKGKGT--LSEKDIDVAMRE-IKLALLEADVSYKIVKE 51

Query: 66  IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGV 119
            V ++  K    +V       Q+V+  V+  + +++  +S      FS +   I ++VG+
Sbjct: 52  FVNDVKEKSLGSEVMKSLTPDQQVIKFVNTELRELMGDVSSKLT--FSPKGFTIYMMVGL 109

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
            G GKTT   KL+K + + G K MLAA D +R AAIDQL++       +       S   
Sbjct: 110 QGTGKTTTCAKLAKYLKEQGKKPMLAACDVYRPAAIDQLEVVGKDVGVEVYADREESSPV 169

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +A  A ++A+   ++VLI+DTAGRL  +  LM  +  +     + + H PH +L V+DA
Sbjct: 170 KIAKAAIEKAERLGMNVLILDTAGRLQIDEELMDELADI-----KSEVH-PHEILLVVDA 223

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ+A+     FH   G  G+IMTK+DG ARGG  + +       + F+G+GE  ++ E
Sbjct: 224 LTGQDAVNTASGFHDKLGVDGVIMTKLDGDARGGAALSVKKVTGTAIKFVGLGEKFDEFE 283

Query: 300 PF 301
            F
Sbjct: 284 VF 285


>gi|320354484|ref|YP_004195823.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfobulbus propionicus DSM 2032]
 gi|320122986|gb|ADW18532.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfobulbus propionicus DSM 2032]
          Length = 449

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 153/303 (50%), Gaps = 24/303 (7%)

Query: 30  EGITDIISS---------RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           E +TD + S         R  ++ ++E   E+   L+ +D+   V ++ +  +  K   +
Sbjct: 3   ENLTDRLESTFKKLRGHGRLTEENIQEAMGEVRTALLEADVNFGVVKEFIASVTEKAIGR 62

Query: 78  DVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q+V+  V + + ++L   ++P   D   +P VI++ G+ G GKTT   KL+
Sbjct: 63  EVLTSLSPGQQVVKVVHDELVELLGSQAEPLKLD-GRQPVVIMLAGLQGSGKTTTAAKLA 121

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K++ + G    L   D +R AAI+QL +  ++       S        +A +A  +A+  
Sbjct: 122 KQLKEKGRAPFLVPADVYRPAAIEQLHVLGEQVGVPVYASTTEQKPVDIARQAVAEARTG 181

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D +IIDTAGRLH +  LMA + ++ R +    P A   VL V DA TGQ+A+   + F
Sbjct: 182 HYDTVIIDTAGRLHVDEALMAELQEISRTV----PLA--EVLFVADAMTGQDAVTVADKF 235

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     TG+++TKM+G ARGG  + +      P+ F+GVGE +  LE F     ++ I G
Sbjct: 236 NTDLEITGVVLTKMEGDARGGAALSVKKVTGKPIKFVGVGESVEALEVFHPDRAASRILG 295

Query: 313 CLD 315
             D
Sbjct: 296 MGD 298


>gi|255716822|ref|XP_002554692.1| KLTH0F11374p [Lachancea thermotolerans]
 gi|238936075|emb|CAR24255.1| KLTH0F11374p [Lachancea thermotolerans]
          Length = 534

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 127/235 (54%), Gaps = 10/235 (4%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           +Q+ ++D  EL + ++   ++PF      + +VI+ VG+ G GKTT   KL+   S  G 
Sbjct: 78  IQKTVFD--ELCN-LVDGETEPFQPK-KRKQNVIMFVGLQGSGKTTSCTKLAVYYSKRGF 133

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           KV L   DTFR+ A DQLK  A +    F  S   ++   +A E   + + +K +V+I+D
Sbjct: 134 KVGLVCADTFRAGAFDQLKQNAIKARIPFYGSYTETNPVKVAAEGVAKFKKEKFEVIIVD 193

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           T+GR      L   + ++ +V+K      P+  + VLDA+ GQ A +Q + F   +    
Sbjct: 194 TSGRHRQEEELFQEMVEISQVVK------PNQTIMVLDASIGQAAEQQSKAFKDSSDFGA 247

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TKMDG A+GGG I  V   K P+ F+G GE ++D E F  K F + + G  D
Sbjct: 248 IILTKMDGHAKGGGAISAVAATKTPIIFIGTGEHVHDFEKFSPKSFISKLLGIGD 302


>gi|182414651|ref|YP_001819717.1| signal recognition particle protein [Opitutus terrae PB90-1]
 gi|177841865|gb|ACB76117.1| signal recognition particle protein [Opitutus terrae PB90-1]
          Length = 447

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 150/310 (48%), Gaps = 30/310 (9%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL---- 71
           F S + KL + + ++     +S   + + ++E +   L+ +D+   VA++ VE +     
Sbjct: 2   FESLTEKLGQALRNLRGVGTLSEENMAEALKE-VRSALLSADVHFKVAREFVERVQQQAV 60

Query: 72  ----TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
               TK  A    V ++++D +  L+ +    LS         RP  +L+VG++G GKTT
Sbjct: 61  GQQVTKGIAPGQQVIKIIHDELVRLLGEGTTALS-------GERPLKVLMVGLHGSGKTT 113

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL K +   G +  + A D +R AAIDQL+I A +    F    +  D  A+   A 
Sbjct: 114 STAKLGKLLKKRGYRPFVVACDVYRPAAIDQLEILAKQEELGFYADRVSKDVPAIGSAAL 173

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNA 245
            +AQA   D +I DTAGRL  +  L       I  +KRL     P  VL V D   GQ A
Sbjct: 174 AEAQAATADCIIFDTAGRLQIDQDL-------IEEVKRLRARVQPDEVLLVADGALGQEA 226

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +   + FH     TGL++TKMDG ARGG  + I     +P+ F+G GE   D EPF    
Sbjct: 227 VNVAKAFHDALQLTGLVLTKMDGDARGGAALSIKTITGVPIKFVGTGEKTADFEPFHPDR 286

Query: 306 FSAVITGCLD 315
            ++ I G  D
Sbjct: 287 LASRILGMGD 296


>gi|5912323|emb|CAB56078.1| cell division protein [Rickettsia montanensis]
          Length = 136

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 2/136 (1%)

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++AY   +++  + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HSVL V+
Sbjct: 2   ASVAYRGMEESMKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VI 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   QVE F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I D
Sbjct: 61  DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DF+  + G 
Sbjct: 121 LKIFNRHDFARNLVGL 136


>gi|294786046|ref|ZP_06751331.1| signal recognition particle protein [Fusobacterium sp. 3_1_27]
 gi|294486268|gb|EFG33633.1| signal recognition particle protein [Fusobacterium sp. 3_1_27]
          Length = 444

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 144/285 (50%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELLTKRYAKDVS-VQRVLYDVSE 90
           +S   + D +RE ++  L+ +D+   V +    KI E+ +     K V+  Q+ +  V++
Sbjct: 22  LSESNIKDALRE-VKMSLLEADVNYKVVKDFTNKISEKAIGTEVIKGVNPAQQFIKLVND 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + ++L   S        + P +I++ G+ G GKTT   KL+K +     K++L   D +
Sbjct: 81  ELVELLGGTSSKLTKGLRN-PTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI QL++   +   D    E   D   +A  A ++A+      +I+DTAGRLH +  
Sbjct: 140 RPAAIKQLQVLGQQIGVDVYSEEDTKDVVGIATRAIEKAKEINATYMIVDTAGRLHIDET 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + ++ R +K      P  +L V+DA  GQ+A+   E F+      G+I+TK+DG  
Sbjct: 200 LMEELKELKRAIK------PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDT 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+GVGE +ND+E F      + I G  D
Sbjct: 254 RGGAALSIKAVVGKPIKFIGVGEKLNDIEIFHPDRLVSRILGMGD 298


>gi|78042676|ref|YP_360266.1| signal recognition particle protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77994791|gb|ABB13690.1| signal recognition particle protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 446

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 155/305 (50%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+E    +    RL ++ V   L ++   L+ +D+   V +  + ++  K   
Sbjct: 3   FENLSNKLQEVFKKLKGKGRLTEEDVNLALREVRIALLEADVNFQVVKDFIAKVKEKAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V E +  ++   +   N D    P +I++VG+ G GKTT   KL
Sbjct: 63  HEVLESLTPGQQVIKIVHEELINLMGKTNAKLN-DAGSPPTIIMLVGLQGAGKTTTAAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA-LAYEAFKQAQ 190
           +  +   G K +L A D +R AAI QL++  D  + D     +G  +   +A  +   A+
Sbjct: 122 AYLLKKQGKKPLLVAADVYRPAAIKQLQVLGD--TIDVPVFTMGEQSPVDIAKASINFAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   + +IIDTAGRLH N  LM  + K+  V+       PH +L V+DA TGQ+A+   +
Sbjct: 180 SNLKNYVIIDTAGRLHINEELMDELKKIKDVVH------PHEILLVVDAMTGQDAVNVAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+I+TK+DG  +GG  + +      P+ F G+GE I +LEPF     ++ I
Sbjct: 234 SFNDELGLTGVILTKLDGDTKGGAALSVKAVTGCPIKFAGMGEKIENLEPFYPDRMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|193084148|gb|ACF09814.1| signal recognition particle subunit Ffh SRP54 [uncultured marine
           group III euryarchaeote SAT1000-53-B3]
          Length = 444

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 111/205 (54%), Gaps = 8/205 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P  I++VG+ G GKTT  GKL K     GL + L A D  R AA DQL    ++      
Sbjct: 97  PQKIMLVGLYGQGKTTTTGKLGKHFKKKGLNLGLIAADVHRPAAFDQLSQIGEQVQVPVF 156

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S    DA  +  E  ++   K++DV+I+DTAGR   +  L++ +  + +++K      P
Sbjct: 157 GSSDNKDAGKVVKEGLEEF--KELDVVIVDTAGRHALDEELISEMKSISKIVK------P 208

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+DAT GQ A  Q + FH   G +G+I+TK+DG+A+GGG +  V   K P+ F+G
Sbjct: 209 DEILLVMDATVGQQAGPQAQAFHDAVGVSGVILTKLDGSAKGGGALSAVAVTKAPIVFVG 268

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE ++ LE      F + + G  D
Sbjct: 269 TGESLDSLETLDPDRFISRLLGMGD 293


>gi|315038606|ref|YP_004032174.1| signal recognition particle protein [Lactobacillus amylovorus GRL
           1112]
 gi|312276739|gb|ADQ59379.1| signal recognition particle protein [Lactobacillus amylovorus GRL
           1112]
 gi|327183810|gb|AEA32257.1| signal recognition particle protein [Lactobacillus amylovorus GRL
           1118]
          Length = 476

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  ++ +  +   K+V       Q+V+  V+E + KM+   + P N   
Sbjct: 39  LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            H P +I++VG+ G GKTT +GKL+  +      + +L AGD +R AA+DQLK   ++  
Sbjct: 98  KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGEQLK 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D A +  +   +A+  K D ++IDTAGRL  +  LM  + ++ +V     
Sbjct: 158 VPVYSEDGEKDVAKIVQDGLAEAEKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAN--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P ++L V+DA TGQ A    + F      TG+I+TK+DG  RGG  + I      P+
Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G GE ++DL+ F     ++ I G  D
Sbjct: 272 LFTGQGEKLSDLDVFHPDRMASRILGMGD 300


>gi|310800676|gb|EFQ35569.1| signal recognition particle protein SRP54 [Glomerella graminicola
           M1.001]
          Length = 526

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 149/304 (49%), Gaps = 28/304 (9%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-- 80
           ++   ++++     LD    DG+ +E+   L+ +D+ V +  ++ + + +    K++   
Sbjct: 9   RINTAVSNLTREPNLDEKAFDGMLKEICAALLEADVNVRLVGQLRKSIKSTVNFKELPPA 68

Query: 81  ------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                 +Q+ ++D  EL+ K++ P ++PF      + ++++ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-KLVDPHAEPFKPK-KGKSNIVMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + +K 
Sbjct: 125 YQARGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVAKEGVDKFKKEKF 184

Query: 195 DVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +++I+DT+GR      L   M  I   IR         P   + VLDA+ GQ A  Q + 
Sbjct: 185 EIIIVDTSGRHRQEEALFQEMVDIQTAIR---------PDETIMVLDASIGQQAESQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK DG A GGG I  V     P+ F+G GE + D E F  + F + + 
Sbjct: 236 FKEAADFGAIIITKTDGHASGGGAISAVAATHTPIVFIGTGEHMLDFERFAPQQFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|238503263|ref|XP_002382865.1| signal recognition particle protein SRP54 [Aspergillus flavus
           NRRL3357]
 gi|220691675|gb|EED48023.1| signal recognition particle protein SRP54 [Aspergillus flavus
           NRRL3357]
          Length = 527

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 144/301 (47%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVNDLTRSNNLDEKAFDDMLKEICAALLSADVNVRLVQSLRKSIKSSVNFASLPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  EL+  ++ P + PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-ALVNPHADPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ 
Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   F A
Sbjct: 185 EIIIVDTSGRHKQEEELFTEMTQIQTAV------TPDQTILVLDSTIGQAAEAQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|327401116|ref|YP_004341955.1| Signal recognition 54 kDa protein [Archaeoglobus veneficus SNP6]
 gi|327316624|gb|AEA47240.1| Signal recognition 54 kDa protein [Archaeoglobus veneficus SNP6]
          Length = 436

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 148/300 (49%), Gaps = 28/300 (9%)

Query: 28  LKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV---- 79
           LK+ +  I  S  +D  + EE    ++  L+++D+ V   ++I + +  +  ++DV    
Sbjct: 6   LKDIVKKIARSTTVDKALVEEVVRDIQRALLKADVNVRQVKEISDAIKKRALSEDVLPTF 65

Query: 80  ----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                + R++Y+  EL+  +   L  P       +   I++VG+ G GKTT   KL+K  
Sbjct: 66  NVREHIIRIVYE--ELMRGIGEGLEIPL------KKAKIMLVGLQGSGKTTTAAKLAKYF 117

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
            D G+K  + A DT+R AA +QLK  A+     F   +   DA  +A    K    K  D
Sbjct: 118 KDKGMKTGVIAADTWRPAAYEQLKQLAESYGIGFYGEKENKDAVEIARNGLKAL--KDYD 175

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++IIDTAGR      L   I +MI + K   P      L VLDA  GQ A RQ + FH  
Sbjct: 176 MIIIDTAGRHALEEEL---IDEMIEIAKATQPDYK---LLVLDAAIGQLASRQAKAFHDA 229

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+I+TK DGTA+GGG +       IP+ F+G GE + D E F    F + + G  D
Sbjct: 230 IGINGIIITKFDGTAKGGGALSAAREIGIPIAFIGTGEKVEDFERFDPAGFVSRLLGMGD 289


>gi|254525556|ref|ZP_05137608.1| signal recognition particle protein [Prochlorococcus marinus str.
           MIT 9202]
 gi|221536980|gb|EEE39433.1| signal recognition particle protein [Prochlorococcus marinus str.
           MIT 9202]
          Length = 486

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 148/286 (51%), Gaps = 14/286 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           IS   ++D + + ++  L+ +D+ ++V +  + E+  K   ++V       Q+ +  V++
Sbjct: 22  ISENNINDALNQ-VKRALLDADVSLSVVKDFISEVKEKAIGEEVVRGVNPGQKFIEVVNK 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  ++   + P N +  + P VIL+ G+ G GKTT  GKL   +     KV+L A D +
Sbjct: 81  ELINIMGNENSPLNEN-ENSPTVILMAGLQGAGKTTATGKLGLYLKAKDKKVLLVAADIY 139

Query: 151 RSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           R AA++QLK    +   + F   E       +A +A   A+    + +IIDTAGRL  + 
Sbjct: 140 RPAAVEQLKTLGSQYDLEVFSAKEKNCKPEVIAKDALNFARENDFNSIIIDTAGRLQIDD 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +M+   +M+R+    +   P  VL V+D+  GQ A    + FH   G +G I+TK+DG 
Sbjct: 200 SMMS---EMVRIK---EVSNPDEVLLVVDSMIGQEAADLTKSFHEKVGISGAILTKLDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + I      P+ F+GVGE I  L+PF  +  ++ I G  D
Sbjct: 254 SRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRILGMGD 299


>gi|325957087|ref|YP_004292499.1| signal recognition particle protein [Lactobacillus acidophilus
           30SC]
 gi|325333652|gb|ADZ07560.1| signal recognition particle protein [Lactobacillus acidophilus
           30SC]
          Length = 476

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  ++ +  +   K+V       Q+V+  V+E + KM+   + P N   
Sbjct: 39  LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            H P +I++VG+ G GKTT +GKL+  +      + +L AGD +R AA+DQLK   ++  
Sbjct: 98  KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGEQLK 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D A +  +   +A+  K D ++IDTAGRL  +  LM  + ++ +V     
Sbjct: 158 VPVYSEDGEKDVAKIVQDGLAEAEKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAN--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P ++L V+DA TGQ A    + F      TG+I+TK+DG  RGG  + I      P+
Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G GE ++DL+ F     ++ I G  D
Sbjct: 272 LFTGQGEKLSDLDVFHPDRMASRILGMGD 300


>gi|312143704|ref|YP_003995150.1| signal recognition particle protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904355|gb|ADQ14796.1| signal recognition particle protein [Halanaerobium sp.
           'sapolanicus']
          Length = 445

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 138/274 (50%), Gaps = 12/274 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101
           +E++  L+ +D+   V ++ V ++  +   K+V       Q+V+  V+E +  ++    +
Sbjct: 33  KEVKMALLEADVNYKVVKRFVNKIEERAVGKEVMDSLTPAQQVIKIVNEEMQNLMGGSQE 92

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
             N      P +I++VG+ G GKTT  GKL++ +S+ G   +L A D +R AAI QL++ 
Sbjct: 93  EINIS-PDPPTIIMMVGLQGSGKTTSAGKLARMLSNKGKNPLLVAADVYRPAAIRQLQVL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            +R           SD   +A  +   A     D +I+DTAGRLH +  +M  +  +   
Sbjct: 152 GERLDLPVFSMGEDSDPVDIAKGSINFASTHNCDTIILDTAGRLHIDQEMMEELEGIKGA 211

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +       P  +L V+DA TGQ+A+   + F       G+++TKMDG ARGG  + I   
Sbjct: 212 VD------PDEILLVVDAMTGQDAVNVAQNFDKRLDIDGILLTKMDGDARGGAALSIKEI 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ F G GE + DLEPF     ++ I G  D
Sbjct: 266 TGKPIKFAGTGEKLADLEPFHPDRMASRILGMGD 299


>gi|119498779|ref|XP_001266147.1| signal recognition particle protein SRP54 [Neosartorya fischeri
           NRRL 181]
 gi|119414311|gb|EAW24250.1| signal recognition particle protein SRP54 [Neosartorya fischeri
           NRRL 181]
          Length = 522

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 145/301 (48%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVNDLTRSSNLDEKAFDDMLKEICAALLSADVNVRLVQTLRKSIKSSVSFSSLPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  EL+  ++ P ++PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-ALVDPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ 
Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +V+I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   F A
Sbjct: 185 EVIIVDTSGRHKQEEELFTEMTQIQNAV------TPDQTILVLDSTIGQAAEAQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHLMDLERFEPKAFVQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|119872111|ref|YP_930118.1| GTP-binding signal recognition particle [Pyrobaculum islandicum DSM
           4184]
 gi|158512993|sp|A1RS43|SRP54_PYRIL RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|119673519|gb|ABL87775.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pyrobaculum
           islandicum DSM 4184]
          Length = 433

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/232 (36%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           +LYD  EL+   L+   +P  +    +P+++L++GV G GKTT   KL++ +   G +V 
Sbjct: 76  ILYD--ELVK--LLGGEQPAEFKPVKKPYLVLLLGVEGSGKTTTAAKLARYLVKRGYRVG 131

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L   DT R AA DQLK  A++    F       DA  +A    +    K +DV+IIDTAG
Sbjct: 132 LVETDTIRPAAFDQLKQLAEKIGVPFYGERDSKDAVEIARRGVQNF--KNMDVVIIDTAG 189

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R  N   L+  + KMI      +   P  V+ V+DAT G+ A  Q E F        +I+
Sbjct: 190 RHKNEEALLQEV-KMI-----YEAVNPDEVILVIDATVGKLAAAQAEAFMKYLPIHSVII 243

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TKMD TARGGG +  V+     V F+GVGE +++ + F  + F A + G  D
Sbjct: 244 TKMDSTARGGGALAAVIKTGARVKFIGVGEDVDEFDLFNPRKFVARVLGMGD 295


>gi|251788621|ref|YP_003003342.1| signal recognition particle protein [Dickeya zeae Ech1591]
 gi|247537242|gb|ACT05863.1| signal recognition particle protein [Dickeya zeae Ech1591]
          Length = 453

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/212 (37%), Positives = 113/212 (53%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D +R AAI QL+  A    
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKQKKKVLVVSADVYRPAAIKQLETLAQTVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  SE       +   A + A+ K  DVL++DTAGRLH +  +M  I ++        
Sbjct: 157 VDFFPSEAHEKPIDIVNRALQHAKLKFYDVLLVDTAGRLHVDDAMMDEIKQV-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+I+TK+DG ARGG  + I     
Sbjct: 209 -HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVILTKIDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 268 KPIKFLGVGEKTDALEPFYPDRIASRILGMGD 299


>gi|169776553|ref|XP_001822743.1| signal recognition particle protein [Aspergillus oryzae RIB40]
 gi|83771478|dbj|BAE61610.1| unnamed protein product [Aspergillus oryzae]
          Length = 527

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 144/301 (47%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVNDLTRSNNLDEKAFDDMLKEICAALLSADVNVRLVQSLRKSIKSSVNFASLPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  EL+  ++ P + PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-ALVNPHADPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ 
Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   F A
Sbjct: 185 EIIIVDTSGRHKQEEELFTEMTQIQTAV------TPDQTILVLDSTIGQAAEAQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|221633791|ref|YP_002523017.1| signal recognition particle protein [Thermomicrobium roseum DSM
           5159]
 gi|221156000|gb|ACM05127.1| signal recognition particle protein [Thermomicrobium roseum DSM
           5159]
          Length = 488

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 138/280 (49%), Gaps = 13/280 (4%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKM 95
           +D+ +RE +   L+ +D+   V +  +  +  +   ++V       Q+V+  V + + ++
Sbjct: 27  VDEALRE-VRRALLEADVHYTVVRDFIAAVRERAIGEEVLRSLTPAQQVIAIVHQELVRV 85

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L     P  W  S  P +I++VG+ G GKTT + KL   +   G + +L A D +R AA+
Sbjct: 86  LGSERVPLLW-ASQPPTIIMLVGLQGSGKTTQVAKLGYHLRKEGRRPLLVAADIYRPAAV 144

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+    +            D       A K A+ +  + +IIDTAGRL  +  +M  +
Sbjct: 145 EQLRTLGKQHDLPVYDEGTKVDPVETVKHAVKVARDQGYNPVIIDTAGRLQIDEPMMQEL 204

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +M   ++      P  +L V DA TGQ A+   + FH     TGLI+TK+DG ARGG  
Sbjct: 205 ERMAEAVR------PTEILLVADAMTGQEAVNVAKEFHRRLSLTGLILTKLDGDARGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I     +P+ F+G GE ++ LEPF     +  I G  D
Sbjct: 259 LSIRAVVGVPIKFIGTGERVDALEPFYPDRLATRILGMGD 298


>gi|301063509|ref|ZP_07204041.1| signal recognition particle protein [delta proteobacterium NaphS2]
 gi|300442448|gb|EFK06681.1| signal recognition particle protein [delta proteobacterium NaphS2]
          Length = 441

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 142/268 (52%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +K++E++  +   +DV       Q+++  V++ + +++    K      
Sbjct: 38  LLEADVNYKVVKKLIEDIRERAVGQDVLDSLTPGQQIIKIVNDELARLMGESHKGLELT- 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
              PH +++VG+ G GKTT   KL+  +   G + +L   D +R AA+DQLK    +   
Sbjct: 97  GEMPHSLMLVGLQGSGKTTTAAKLAAHLRKRGRQPLLVPADVYRPAAVDQLKKLGLQIDV 156

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +E G    A+  +A   A A+  D++I DTAGRLH +  LM    +++ + ++++ 
Sbjct: 157 PVYPTEKGQTPDAICMDAMTGAAAQGADIVIFDTAGRLHVDEALM---DELVVIKEKVN- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V DA TGQ+A+   + F+     TG++++KM+G ARGG  + I      P+ 
Sbjct: 213 --PTEILLVADAMTGQDAVNVAKSFNETLDITGVVLSKMEGDARGGAALSIKAVTGKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+GVGE I+ LE F     ++ I G  D
Sbjct: 271 FVGVGEKISALELFHPDRMASQILGMGD 298


>gi|330721223|gb|EGG99327.1| Signal recognition particle2C subunit Ffh SRP54 [gamma
           proteobacterium IMCC2047]
          Length = 455

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 146/289 (50%), Gaps = 25/289 (8%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           DD ++  L ++   L+ +D+ + V +  +E++  +   ++V       Q ++  V   + 
Sbjct: 24  DDNIKSTLREVRKALLEADVALPVVKAFIEQVRKRAVGQEVKRSLSPGQALIKVVQNELE 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRS 152
            ++   S+  N   +  P VILV G+ G GKTT +GKL++ + +    KV + + D +R 
Sbjct: 84  NVMGEKSEDLNL-ATQPPAVILVAGLQGAGKTTSVGKLARFLKERHNKKVTVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI QL+  A    ADF  S        +A  A + A+ K  DVLI+DTAGRLH +  +M
Sbjct: 143 AAIKQLETLAAEVEADFFPSSADQKPIDIANAAIEHARLKYSDVLILDTAGRLHVDEGMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA TGQ+A    + F+     TG+++TK DG 
Sbjct: 203 DEIKAL---------HAAVEPIETLFVVDAMTGQDAANTAKAFNDALPLTGVVLTKADGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           +RGG  + +      P+ F+G+GE  + LEPF       V +  LD G+
Sbjct: 254 SRGGAALSVRHITGKPIKFMGMGEKTDALEPFYP---DRVASRILDMGD 299


>gi|329667089|gb|AEB93037.1| signal recognition particle protein [Lactobacillus johnsonii DPC
           6026]
          Length = 476

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 155/306 (50%), Gaps = 20/306 (6%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + S +L++ + ++     IS   ++D  RE +   L+ +D+   V +  ++++  +  
Sbjct: 3   FENLSERLQKALKNLTGKGKISEADINDASRE-IRLALLEADVNFKVVKDFIKKIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V + + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQDSLNPGQQIIKIVDDELTKMMGEETVSLNKS-PHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+   M +   + +L AGD +R AAI+QLK    +     V SE   D A +     ++A
Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIEQLKQIGQQLDVS-VYSEDNQDVAEIVKHGLEEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM  + ++  V        P + L V+DA TGQ A +  
Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDELKRVTEVAH------PDNTLLVVDAMTGQAATQVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I     +P+ F G GE + DL  F     ++ 
Sbjct: 234 EGFNNDLDLTGIVLTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|326798855|ref|YP_004316674.1| signal recognition particle protein [Sphingobacterium sp. 21]
 gi|326549619|gb|ADZ78004.1| signal recognition particle protein [Sphingobacterium sp. 21]
          Length = 446

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 7/213 (3%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWA 162
           + +    P VIL+ G+NG GKTT  GKL+K + +  G K +L AGD +R AAIDQL++ A
Sbjct: 92  DLELGKNPTVILIAGLNGAGKTTFTGKLAKYLKEKRGKKPLLVAGDVYRPAAIDQLEVLA 151

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +       +    D  A+A E    A+    +V+I+DTAGRL  +  LM  I  +    
Sbjct: 152 QQVDVPVYTNRESKDPIAIAEEGVAAAKRNGQNVVIVDTAGRLAIDEALMNEISAVKEAT 211

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                  PH +L V+D+ TGQ+A+   ++F+     TG+++TK+DG  RGG  + I    
Sbjct: 212 N------PHEILFVVDSMTGQDAVNTAKVFNDRLDFTGVVLTKLDGDTRGGAALSIKSVV 265

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+G GE ++ L+ F     ++ I G  D
Sbjct: 266 NKPIKFIGTGEKMDALDVFHPDRMASRILGMGD 298


>gi|114331694|ref|YP_747916.1| signal recognition particle protein [Nitrosomonas eutropha C91]
 gi|114308708|gb|ABI59951.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nitrosomonas
           eutropha C91]
          Length = 449

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 147/290 (50%), Gaps = 20/290 (6%)

Query: 37  SSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVS 89
            +R  +  ++E L ++   LI +D+ +   +  +E++  +    +V    S  +    V 
Sbjct: 19  EARLTESNIQEALREVRIALIEADVALPAIKVFIEQVKQRAIGHEVLGKLSPGQAFIGV- 77

Query: 90  ELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLA 145
             +H+ LM +      D +     P VIL+ G+ G GKTT  GKL+K  M     KV+L 
Sbjct: 78  --VHEELMAIMGGDKADINLNVAPPAVILMAGLQGAGKTTSSGKLAKWLMEQKKKKVLLV 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           + D +R AAI+QL + A++T ADF   + G   A ++  A   A+    DV+I+DTAGRL
Sbjct: 136 SCDIYRPAAIEQLALLAEQTGADFFPVKTGQQPAEISTAALDFARKHHHDVVIVDTAGRL 195

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             +  +M  I ++ ++L       P   L V+DA  GQ+A+     F  V   TG+I+TK
Sbjct: 196 GIDEAMMQEISQLEQLLN------PVETLFVVDAMQGQDAVNTARAFAEVLPLTGVILTK 249

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +DG ARGG  + +      P+ F GV E +  LEPF     ++ I G  D
Sbjct: 250 LDGDARGGAALSVRHITGKPIKFAGVAEKLTGLEPFYPDRMASRILGMGD 299


>gi|219681749|ref|YP_002468135.1| signal recognition particle protein [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682304|ref|YP_002468688.1| signal recognition particle protein [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471450|ref|ZP_05635449.1| signal recognition particle protein [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219622037|gb|ACL30193.1| signal recognition particle protein [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624592|gb|ACL30747.1| signal recognition particle protein [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086703|gb|ADP66784.1| signal recognition particle protein [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 451

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 165/306 (53%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  II+  RL ++ ++E   E+   L+ +D+ ++V +K +E +  K   
Sbjct: 2   FNNLTQRLSDSLKKIINKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSIG 61

Query: 77  KDVSVQRVLYDVSELI----HKMLMPL-SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130
            +++  + L    E I    H+++  +  K  + +FS   P VILVVG+ G GKTT + K
Sbjct: 62  HEIN--KSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIEPPAVILVVGLQGSGKTTSLAK 119

Query: 131 L-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L     +    K+++ + DT+R+AAI+QLKI +D+   DF  S+       +   A K A
Sbjct: 120 LGKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFESDKHHTPIEITKNAIKYA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL+IDTAGRLH +  +M  I ++  + K ++       L ++D+  GQ+A+   
Sbjct: 180 KLKLYDVLLIDTAGRLHIDKKMMNEIQQIQVISKAIE------TLLIVDSMMGQDAINMA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F+     +G+I+TK DG +R G  + +      P+ F+G GE I  LEPF  +  +  
Sbjct: 234 KIFNNDLLISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMND 299


>gi|78188776|ref|YP_379114.1| Signal recognition particle protein [Chlorobium chlorochromatii
           CaD3]
 gi|78170975|gb|ABB28071.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium
           chlorochromatii CaD3]
          Length = 451

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 138/268 (51%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   VA+K++E++  K   ++V       Q ++  V + + +++    KP N   
Sbjct: 40  LLAADVNYKVAKKLIEDIREKSLGEEVIKSVSPAQMIVKIVYDELTELMGGEQKPLNLSP 99

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
              P +I+V G+ G GKTT   KL+ ++   G   ML A D +R AA+DQLK   ++   
Sbjct: 100 KKLPAIIMVAGLQGSGKTTFCAKLALRLRKNGKNPMLIAADVYRPAAVDQLKALGEQVEV 159

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V S    DA   A +  + A+A   DV+I+DTAGRL  +  +MA    +   LK    
Sbjct: 160 P-VFSVDEKDAMKAALQGLEAAKAAAKDVVIVDTAGRLQIDQAMMAEAEALKNALK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+  GQ A+   + F+      G+++TK+DG ARGG  + I    + P+ 
Sbjct: 215 --PDELLFVVDSMMGQEAVNTAKAFNDRLDFDGVVLTKLDGDARGGAALSIRQVVEKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+ +GE ++DL+ F     +  I G  D
Sbjct: 273 FISIGEKVDDLDIFYPDRMAQRILGMGD 300


>gi|312622773|ref|YP_004024386.1| signal recognition particle protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203240|gb|ADQ46567.1| signal recognition particle protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 443

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 153/307 (49%), Gaps = 22/307 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F+S S KL++    +    +L +  ++E ++++   L+ +D+   V +  +  +  K   
Sbjct: 2   FSSLSEKLQDVFKKLRGKGKLTEKDIKEAMKEVKLALLEADVNYKVVKDFINTVTQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVI 128
           ++V       Q+V+    ++++  ++ L    +   +  P    + ++VG+ G GKTT  
Sbjct: 62  EEVLESLTPAQQVI----KIVYDEMVNLLGGSDTKLAFSPSGFSIYMLVGLQGSGKTTTA 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  +   G   +L A D +R AAI QL+I A +            DA  +A E  + 
Sbjct: 118 GKLAGLLKRQGKNPLLVACDIYRPAAIKQLEIVAQKVGVKCFADYNSKDAVKIAKEGIEF 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A + DV I+DTAGRLH N  LM  +  +   +K      P  +L VLDA TGQ+A+  
Sbjct: 178 AKASRCDVAIVDTAGRLHINQELMDELVAIKNAIK------PTEILLVLDAMTGQDAVNV 231

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F+   G  G+IMTK+DG  RGG  + +      P+ F GVGE + DLE F     ++
Sbjct: 232 AAAFNEQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVGEKMEDLEAFHPDRMAS 291

Query: 309 VITGCLD 315
            I G  D
Sbjct: 292 RILGMGD 298


>gi|302408571|ref|XP_003002120.1| signal recognition particle 54 kDa protein [Verticillium albo-atrum
           VaMs.102]
 gi|261359041|gb|EEY21469.1| signal recognition particle 54 kDa protein [Verticillium albo-atrum
           VaMs.102]
          Length = 518

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 145/297 (48%), Gaps = 22/297 (7%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS------ 80
           ++   ++D+  +  LD    E+      RSD+ V +  ++ + + +    KD+       
Sbjct: 9   RINTAVSDLTRAPNLD----EKRSAPPPRSDVNVRLVGQLRKSIKSTVNFKDLPPAVNKK 64

Query: 81  --VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
             +Q+ ++D  EL+ K++ P ++PF      + +VI+ VG+ G GKTT   KL++     
Sbjct: 65  RLIQKTVFD--ELV-KLVDPHAEPFKPK-KGKANVIMFVGLQGAGKTTTCTKLARHYQAR 120

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           GLK  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ +V+I
Sbjct: 121 GLKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVAREGVDKFKKERFEVII 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DT+GR      L   +  +   +K      P   + VLDA+ GQ A  Q + F   A  
Sbjct: 181 VDTSGRHRQEENLFQEMVDIQAAIK------PDETIMVLDASIGQQAESQAKAFKEAADF 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             +I+TK DG A GGG I  V     P+ F+G GE + D E F  + F   + G  D
Sbjct: 235 GAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDFERFAPQQFVQKLLGMGD 291


>gi|330895929|gb|EGH28213.1| signal recognition particle protein [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330975468|gb|EGH75534.1| signal recognition particle protein [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 458

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 154/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    
Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVK------PAETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE  + LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSDALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|327483374|gb|AEA77781.1| Signal recognition particle, subunit Ffh SRP54 [Vibrio cholerae
           LMA3894-4]
          Length = 475

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A+    DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSSPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|229592399|ref|YP_002874518.1| signal recognition particle protein [Pseudomonas fluorescens SBW25]
 gi|229364265|emb|CAY51982.1| signal recognition particle protein [Pseudomonas fluorescens SBW25]
          Length = 458

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 156/309 (50%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D +     P V+L+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVVLMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL++ A      F  S++      +A  A K+A
Sbjct: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLEMLAGEVGVTFFPSDLSQKPVDIANAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K +DV+I+DTAGRLH +  +M  I  +         HA   P   L V+DA TGQ+A 
Sbjct: 180 KLKFIDVVIVDTAGRLHIDEEMMGEIKAL---------HAAINPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE  + LEPF  +  
Sbjct: 231 NTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSDALEPFHPERI 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|312793157|ref|YP_004026080.1| signal recognition particle protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312878372|ref|ZP_07738282.1| signal recognition particle protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311794857|gb|EFR11276.1| signal recognition particle protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312180297|gb|ADQ40467.1| signal recognition particle protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 443

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 107/203 (52%), Gaps = 6/203 (2%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           + ++VG+ G GKTT  GKL+  +   G   +L A D +R AAI QL++ A +        
Sbjct: 102 IYMMVGLQGSGKTTTAGKLAGLLKKQGKNPLLVACDIYRPAAIKQLEVVAQKVGVKCFAD 161

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               DA  +A E  + A+A + DV I+DTAGRLH N  LM  +  +   +K      P  
Sbjct: 162 YNSKDAVKIAKEGIEFAKANRCDVAIVDTAGRLHINQELMDELVSIKNAIK------PTE 215

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L VLDA TGQ+A+     F+   G  G+IMTK+DG  RGG  + +      P+ F GVG
Sbjct: 216 ILLVLDAMTGQDAVNVATAFNEQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVG 275

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E + DLE F     ++ I G  D
Sbjct: 276 EKMEDLEAFHPDRMASRILGMGD 298


>gi|260574838|ref|ZP_05842840.1| signal recognition particle protein [Rhodobacter sp. SW2]
 gi|259022843|gb|EEW26137.1| signal recognition particle protein [Rhodobacter sp. SW2]
          Length = 497

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 139/269 (51%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V  +  K   + V+      Q+V+  V + + ++L           
Sbjct: 38  LLEADVSLPVARDFVAAVQAKATGQSVTKSVTPGQQVVKIVHDELIRVLAGDGPADALKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  +L+VG+ G GKTT   KL+K++ D  G +V+LA+ DT R AA++QL+I A +  
Sbjct: 98  DNPPACVLMVGLQGSGKTTTTAKLAKRLHDKQGKRVLLASLDTNRPAAMEQLQILAAQVG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G  A  +A  A  QA     DVL +DTAGRLH +  LMA + + +R     D
Sbjct: 158 VDSLPIVKGESATQIAKRAKAQATMGGYDVLFLDTAGRLHIDEALMAEV-QAVR-----D 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ+A+     F    G TG+++T+MDG  RGG  + +      P+
Sbjct: 212 IAQPRETLLVVDGLTGQDAVNVATEFDGKVGITGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F     +  I G  D
Sbjct: 272 RFVGMGEKMDALETFEPDRVAGRILGMGD 300


>gi|237741085|ref|ZP_04571566.1| signal recognition particle protein [Fusobacterium sp. 4_1_13]
 gi|256846224|ref|ZP_05551681.1| signal recognition particle protein [Fusobacterium sp. 3_1_36A2]
 gi|229430617|gb|EEO40829.1| signal recognition particle protein [Fusobacterium sp. 4_1_13]
 gi|256717993|gb|EEU31549.1| signal recognition particle protein [Fusobacterium sp. 3_1_36A2]
          Length = 444

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 6/207 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P +I++ G+ G GKTT   KL+K +     K++L   D +R AAI QL++   +   D
Sbjct: 98  RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E   D   +A  A ++A+      +I+DTAGRLH +  LM  + ++ R +K     
Sbjct: 158 VYSEEDTKDVVGIATRAIEKAKEINATYMIVDTAGRLHIDETLMEELKELKRAIK----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +L V+DA  GQ+A+   E F+      G+I+TK+DG  RGG  + I      P+ F
Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE +ND+E F      + I G  D
Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298


>gi|220918542|ref|YP_002493846.1| signal recognition particle protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956396|gb|ACL66780.1| signal recognition particle protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 550

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 155/317 (48%), Gaps = 24/317 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            +  ++KGF +   KLK G T+I +   +DD +R+ +   L+ +D+   V ++ V  +  
Sbjct: 1   MLETVSKGFKAARNKLK-GRTEI-TPEVVDDALRD-IRVSLLEADVSFDVVKRFVARVRE 57

Query: 73  KRYAKDVSVQ--------RVLYD--VSELIHKMLMPLSKPFNWDFSH----RPHVILVVG 118
           K   + V  +        RV       ++ H  L  L  P +         RP  I++VG
Sbjct: 58  KAIGEVVETKVKTEKGQLRVTPQDHFVKICHDELEALMGPVDTSLRQGERGRPTGIMMVG 117

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT  GK++ ++   G +VML A D +R AA+DQLK+  +R     V  E G   
Sbjct: 118 LQGSGKTTTAGKIANRLLKDGKQVMLVAADVYRPAAVDQLKVLGERLGVP-VFHEPGVSP 176

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +   AF+ AQ    + +I DTAGRL  +  LM  +  +   +      AP ++L V D
Sbjct: 177 PDMCRHAFEAAQRDHRNAVIYDTAGRLAIDDELMTELENIKANV------APENILLVAD 230

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A++    F       G I+TK+DG ARGG  + I      P+ FLG+GE ++ L
Sbjct: 231 AMIGQDAVKTATEFDRRLAIDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGEALDRL 290

Query: 299 EPFVAKDFSAVITGCLD 315
           E F  +  ++ I G  D
Sbjct: 291 EEFRPEGLASRILGFGD 307


>gi|124023656|ref|YP_001017963.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9303]
 gi|123963942|gb|ABM78698.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9303]
          Length = 494

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 149/287 (51%), Gaps = 17/287 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIH 93
           IS   ++D +++ +   L+ +D+ + V ++ V+E+  K    +V V+ V  D    +++H
Sbjct: 22  ISDTNVEDALKQ-VRRALLGADVSLEVVREFVDEVRQKAVGAEV-VRGVTPDQKFVQVVH 79

Query: 94  KMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           + L+ +    N   +     P V+L+ G+ G GKTT   KL   + D G + ++ A D +
Sbjct: 80  QQLVEVMGGDNAPMAEAKDSPTVVLMAGLQGAGKTTATAKLGLHLKDQGQRPLMVAADVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           R AAIDQL+   ++   D     +G D     +A     +A+ +  D L++DTAGRL  +
Sbjct: 140 RPAAIDQLRTLGEQIGVDVFS--LGDDVKPEEIAAAGLAKAREEGFDTLLVDTAGRLQID 197

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           + +M    +M+R+   ++P     VL V+D+  GQ A      FH   G TG ++TK+DG
Sbjct: 198 TEMME---EMVRIRSAVEPD---EVLLVVDSMIGQEAAELTRAFHDKVGITGSVLTKLDG 251

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +RGG  + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 252 DSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298


>gi|295399784|ref|ZP_06809765.1| signal recognition particle protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111704|ref|YP_003990020.1| signal recognition particle protein [Geobacillus sp. Y4.1MC1]
 gi|294978187|gb|EFG53784.1| signal recognition particle protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216805|gb|ADP75409.1| signal recognition particle protein [Geobacillus sp. Y4.1MC1]
          Length = 446

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 112/209 (53%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S  P VI++VG+ G GKTT  GKL+  +        ML A D +R AAI QL+    + +
Sbjct: 98  SRPPTVIMMVGLQGAGKTTTTGKLANLLRKRYNRNPMLVAADIYRPAAIKQLETLGKQLN 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +A +A ++A+ +  D ++IDTAGRLH +  LM  + +M  + K   
Sbjct: 158 MPVFSLGDQVSPVEIAKQAIEKAKEEHYDYVLIDTAGRLHIDETLMDELKQMKEIAK--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  +  V+DA TGQ+A+   + FH   G TG+I+TK+DG  RGG  + I      P+
Sbjct: 215 ---PDEIFLVVDAMTGQDAVNVAQSFHEQLGITGVILTKLDGDTRGGAALSIRAVTNTPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LEPF  +  ++ I G  D
Sbjct: 272 KFVGMGEKLDALEPFHPERMASRILGMGD 300


>gi|320530761|ref|ZP_08031805.1| signal recognition particle protein [Selenomonas artemidis F0399]
 gi|320137048|gb|EFW28986.1| signal recognition particle protein [Selenomonas artemidis F0399]
          Length = 458

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 146/280 (52%), Gaps = 14/280 (5%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKM 95
           ++D +RE +   L+ +D+   V +  V+ +  +   ++V     + Q V+  V E + ++
Sbjct: 28  VNDAMRE-VRMALLEADVNFKVVKDFVKRVKERAVGQEVLDTLTAAQAVIKIVDEELTEL 86

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           +       N    + P VI++VG+ G GKTT  GKL+  +   G + +L A D +R AAI
Sbjct: 87  MGGTESRLNIS-PNPPTVIMLVGLQGSGKTTSAGKLALMLKKQGKRPLLVADDIYRPAAI 145

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            QL++  ++     V S+   DA A+A  +   + A   DV+IIDTAGRL  +  LM  +
Sbjct: 146 KQLEVIGEKVGVP-VFSQGQEDAVAIARASIAYSAAHANDVVIIDTAGRLQIDETLMQEL 204

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +   ++      PH +L V+DA TGQ A+     F A  G  G++MTK+DG ARGG  
Sbjct: 205 RDIKAAVQ------PHEILLVVDAMTGQEAVNVAAAFDASLGLDGIVMTKLDGDARGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      PV F+G+GE ++ LE F     ++ I G  D
Sbjct: 259 LSIKAVTGRPVKFVGMGEKLDPLEVFHPDRMASRILGMGD 298


>gi|261867191|ref|YP_003255113.1| signal recognition particle protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412523|gb|ACX81894.1| signal recognition particle protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 459

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 160/307 (52%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V +  + ++  K  A
Sbjct: 2   FENLSDRLSKTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E +  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  IGVEVNKSLTPGQEFVKIVQAELEAAMGEANESLNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + +    KV++ + D +R AAI QL+  A   +ADF  S++  +   +A  A  +
Sbjct: 119 KLAKFLRERHKKKVLVVSADVYRPAAIKQLETLAQAVNADFFPSDVKQNPVEIAKAALAE 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRLH +  +M  I ++   L       P   L  +DA TGQ+A   
Sbjct: 179 AKLKFYDVLIVDTAGRLHVDGEMMDEIKQVHAALN------PVETLFTVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++
Sbjct: 233 AKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|16330898|ref|NP_441626.1| signal recognition particle protein [Synechocystis sp. PCC 6803]
 gi|2500885|sp|P74214|SRP54_SYNY3 RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|1653392|dbj|BAA18306.1| signal recognition particle protein [Synechocystis sp. PCC 6803]
          Length = 482

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 145/281 (51%), Gaps = 29/281 (10%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D IS   + + + +E+   L+ +D+ + V +  ++++  K    DV           +++
Sbjct: 20  DKISESNIKEAL-QEVRRALLAADVNLQVVKGFIKDVEQKALGADVISGVNPGQQFIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL++ M    +PL++         P VIL+ G+ G GKTT   KL+  +       
Sbjct: 79  YD--ELVNLMGESNVPLAQA-----EQAPTVILMAGLQGTGKTTATAKLALYLRKQKRSA 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200
           ++ A D +R AAIDQLK    +   D    ++GSDA    +A +  ++A+   VD ++ID
Sbjct: 132 LMVATDVYRPAAIDQLKTLGQQI--DVPVFDLGSDANPVEIARQGVEKAKELGVDTVLID 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  +MA + ++ +V+K      P   L V+DA TGQ A      FH   G TG
Sbjct: 190 TAGRLQIDPQMMAELAEIKQVVK------PDDTLLVVDAMTGQEAANLTHTFHEQIGITG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            I+TK+DG  RGG  + +      P+ F+GVGE +  L+PF
Sbjct: 244 AILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPF 284


>gi|315633590|ref|ZP_07888880.1| signal recognition particle protein [Aggregatibacter segnis ATCC
           33393]
 gi|315477632|gb|EFU68374.1| signal recognition particle protein [Aggregatibacter segnis ATCC
           33393]
          Length = 459

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 157/307 (51%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +  +  +  K  A
Sbjct: 2   FENLSDRLSKTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINNV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E +  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  IGVEVNKSLTPGQEFVKIVQAELEAAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + +    KV++ + D +R AAI QL+  A   + DF  S++      +A  A   
Sbjct: 119 KLAKFLRERHKKKVLVVSADVYRPAAIKQLETLAQAVNVDFFPSDVKQKPVDIAKAALAD 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRLH +S +M  I ++   L       P   L  +DA TGQ+A   
Sbjct: 179 AKLKFYDVLIVDTAGRLHVDSEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++
Sbjct: 233 AKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|254466450|ref|ZP_05079861.1| signal recognition particle protein [Rhodobacterales bacterium Y4I]
 gi|206687358|gb|EDZ47840.1| signal recognition particle protein [Rhodobacterales bacterium Y4I]
          Length = 505

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 141/269 (52%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVA----QKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA    +K+ E+   +   K V+  Q+V+  V + +  +L     P     
Sbjct: 38  LLEADVSLPVARDFVKKVQEQATGQAVTKSVTPGQQVVKIVHDALVDVLRGDEDPGKLKV 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  +L+VG+ G GKTT  GKL+K++ +  G KV++A+ D +R AA+DQL +   +  
Sbjct: 98  DNPPAPVLMVGLQGSGKTTTTGKLAKRLKEKEGKKVLMASLDVYRPAAMDQLAVLGMQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G     +A  A +QA     DV ++DTAGRLH +  LM  +  +  V+    
Sbjct: 158 VDTLPIVPGQKPVDIAKRAKQQATLGGYDVYMLDTAGRLHIDETLMQEVEDVRNVV---- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             +P   L V+D  TGQ A+   E F A  G +G+++T+MDG  RGG  + +      P+
Sbjct: 214 --SPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F A   +  I G  D
Sbjct: 272 RFVGLGEKMDALETFEADRIAGRILGMGD 300


>gi|298490416|ref|YP_003720593.1| signal recognition particle protein ['Nostoc azollae' 0708]
 gi|298232334|gb|ADI63470.1| signal recognition particle protein ['Nostoc azollae' 0708]
          Length = 485

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 149/295 (50%), Gaps = 29/295 (9%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D IS   + D +RE +   L+ +D+ + V +  + E+ TK    +V           +++
Sbjct: 20  DKISQSNIQDALRE-VRRALLEADVNLQVVKDFISEVETKAQGAEVITGVRPDQQFIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL+     +   +  ++L+ G+ G GKTT   KL+  +       
Sbjct: 79  YD--ELVQVMGEENIPLA-----EVEGKTTIVLMAGLQGTGKTTATAKLALHLRKLNRSC 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200
           +L A D +R AAI+QL     +   D    E+GSDA    +A +  + A+A+ ++ +I+D
Sbjct: 132 LLVATDVYRPAAIEQLLTLGKQI--DVPVFELGSDADPVEIARQGVEHARAEGINTVIVD 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  +MA + ++   ++      P   L V+D+ TGQ A      FH   G TG
Sbjct: 190 TAGRLQIDQDMMAELSRIKSTIE------PDETLLVVDSMTGQEAANLTRTFHDQIGITG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I+TK+DG +RGG  + +      P+ F+GVGE +  L+PF  +  ++ I G  D
Sbjct: 244 AILTKLDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPERMASRILGMGD 298


>gi|34763935|ref|ZP_00144833.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54 [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886292|gb|EAA23570.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54 [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 444

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 111/210 (52%), Gaps = 9/210 (4%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P +I++ G+ G GKTT   KL+K +     K++L   D +R AAI QL++   +   D
Sbjct: 98  RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E   D   +A  A ++A+      +I+DTAGRLH +  LM  + ++ R +K     
Sbjct: 158 VYSEEDTKDVVGIATRAIEKAKEINATYMIVDTAGRLHIDETLMEELKELKRAIK----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +L V+DA  GQ+A+   E F+      G+I+TK+DG  RGG  + I      P+ F
Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           +GVGE +ND+E F       +++G L  G+
Sbjct: 272 IGVGEKLNDIEIFHP---DRLVSGILGMGD 298


>gi|293391030|ref|ZP_06635364.1| signal recognition particle protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951564|gb|EFE01683.1| signal recognition particle protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 459

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 160/307 (52%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +D +++ L ++   L+ +D+ + V +  + ++  K  A
Sbjct: 2   FENLSDRLSKTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E +  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  IGVEVNKSLTPGQEFVKIVQAELETAMGEANESLNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + +    KV++ + D +R AAI QL+  A   +ADF  S++  +   +A  A  +
Sbjct: 119 KLAKFLRERHKKKVLVVSADVYRPAAIKQLETLAQAVNADFFPSDVKQNPVEIAKAALAE 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRLH +  +M  I ++   L       P   L  +DA TGQ+A   
Sbjct: 179 AKLKFYDVLIVDTAGRLHVDGEMMDEIKQVHAALN------PVETLFTVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++
Sbjct: 233 AKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|42519388|ref|NP_965318.1| signal recognition particle protein [Lactobacillus johnsonii NCC
           533]
 gi|41583676|gb|AAS09284.1| signal recognition particle protein [Lactobacillus johnsonii NCC
           533]
          Length = 476

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 155/306 (50%), Gaps = 20/306 (6%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + S +L++ + ++     IS   ++D  RE +   L+ +D+   V +  ++++  +  
Sbjct: 3   FENLSERLQKALKNLTGKGKISEADINDASRE-IRLALLEADVNFKVVKDFIKKIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V + + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQDSLNPGQQIIKIVDDELTKMMGEEAVSLNKS-PHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+   M +   + +L AGD +R AAI+QLK    +     V SE   D A +     ++A
Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIEQLKQIGQQLDVP-VYSEDNQDVAEIVKHGLEEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM  + ++  V        P + L V+DA TGQ A +  
Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDELKRVTEVAH------PDNTLLVVDAMTGQAATQVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I     +P+ F G GE + DL  F     ++ 
Sbjct: 234 EGFNNDLDLTGIVLTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|312127973|ref|YP_003992847.1| signal recognition particle protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777992|gb|ADQ07478.1| signal recognition particle protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 443

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 107/203 (52%), Gaps = 6/203 (2%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           + ++VG+ G GKTT  GKL+  +   G   +L A D +R AAI QL++ A +        
Sbjct: 102 IYMMVGLQGSGKTTTAGKLAGLLKKQGKNPLLVACDIYRPAAIKQLEVVAQKVGVKCFAD 161

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               DA  +A E  + A+A + DV I+DTAGRLH N  LM  +  +   +K      P  
Sbjct: 162 YNSKDAVKIAKEGIEFAKASRCDVAIVDTAGRLHINQELMDELVSIKNAIK------PTE 215

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L VLDA TGQ+A+     F+   G  G+IMTK+DG  RGG  + +      P+ F GVG
Sbjct: 216 ILLVLDAMTGQDAVNVATAFNEQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVG 275

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E + DLE F     ++ I G  D
Sbjct: 276 EKMEDLEAFHPDRMASRILGMGD 298


>gi|212703525|ref|ZP_03311653.1| hypothetical protein DESPIG_01570 [Desulfovibrio piger ATCC 29098]
 gi|212673025|gb|EEB33508.1| hypothetical protein DESPIG_01570 [Desulfovibrio piger ATCC 29098]
          Length = 502

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 145/285 (50%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           ++   +  G+RE +   L+ +D+   V +  VE +  K   +++       Q+V+  V E
Sbjct: 22  LTEENIQAGLRE-VRLALLEADVNFKVVKDFVENVRQKCLGQELIKGVSPAQQVVKIVHE 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  +L   +   N      P VI++VG+ G GKTT  GK++  +    ++  L   D +
Sbjct: 81  ELVGLLGGETAGLNLQ-GQEPAVIMLVGLQGSGKTTSAGKIANLLRKQKMRPYLVPADVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAIDQL + A +       S +  +   +A +A + A+ ++  V+++DTAGRLH +  
Sbjct: 140 RPAAIDQLTVLAKQLDMPCFPSTVDMNPVDIARQAMEAAREQQATVVLLDTAGRLHVDEP 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +  +   +       P  +L V DA TGQ+A+   E F+   G TG+++TKMDG A
Sbjct: 200 LMQELAAIKAAVN------PQEILFVADAMTGQDAVTVAESFNERLGLTGVVLTKMDGDA 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      PV F+G+GE ++++E F     +  I G  D
Sbjct: 254 RGGAALSIRAVTGAPVKFVGMGEKLSEMEIFHPDRIAGRILGMGD 298


>gi|116753684|ref|YP_842802.1| signal recognition particle protein Srp54 [Methanosaeta thermophila
           PT]
 gi|121693787|sp|A0B638|SRP54_METTP RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|116665135|gb|ABK14162.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methanosaeta
           thermophila PT]
          Length = 444

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 145/279 (51%), Gaps = 17/279 (6%)

Query: 41  LDDGVREELEDLLIRSDIGV----AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
           +DD VR+ ++  L+++D+ V    +++ +I E  L ++    ++ +     V  ++++ L
Sbjct: 28  VDDAVRD-IQRALLQADVNVKLVMSLSNRIRERALNEKPPAGMNPRE---HVINIVYQEL 83

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           + L      D   +   I++VG+ G GKTT   KL+      GL+  +   DTFR+ A D
Sbjct: 84  INLIGR-GTDIPLKKQTIMLVGLQGSGKTTTAAKLATYFQRRGLRTAVICADTFRAGAYD 142

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK   DR    F   +   +A  +A    +    KK DV I+DTAGR    S L+  + 
Sbjct: 143 QLKALCDRQGIFFYGEKGNENAPEVAKNGLEAT--KKYDVRIVDTAGRHALESDLIQEMK 200

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +  V+     +A H +L V+DA  GQ A  Q   F+   G TG+I+TK+DGTA+GGG +
Sbjct: 201 DIHAVV-----NADHKLL-VMDAAIGQQASEQARAFNEAVGITGVIITKLDGTAKGGGAL 254

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             V   K  V F+GVGE  +DLE F A  F + + G  D
Sbjct: 255 SAVAETKTSVAFIGVGETASDLEKFEADRFISRLLGMGD 293


>gi|126698849|ref|YP_001087746.1| signal recognition particle protein [Clostridium difficile 630]
 gi|115250286|emb|CAJ68108.1| Signal recognition particle protein [Clostridium difficile]
          Length = 450

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 6/208 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P ++++VG+ G GKTT  GKL       G K +L A D +R AAI QL++  ++   
Sbjct: 98  SKPPTILMMVGLQGAGKTTTAGKLGGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    +   +A      A     D++IIDTAGRLH + +LM  +  +   +K    
Sbjct: 158 PVFNMGDKENPVNIAKAGLNHAIKNANDLVIIDTAGRLHIDEVLMDELKSIKSEVK---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             PH +L V+D+ TGQ+A+   E F+   G  G+++TK+DG  RGG  + I    + P+ 
Sbjct: 214 --PHEILLVVDSMTGQDAVNVAESFNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G+GE ++D+EPF     ++ I G  D
Sbjct: 272 FMGMGEKLDDIEPFHPDRMASRILGMGD 299


>gi|261210129|ref|ZP_05924427.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. RC341]
 gi|260840894|gb|EEX67436.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. RC341]
          Length = 462

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A+    DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSSPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|227872399|ref|ZP_03990746.1| signal recognition particle protein Ffh [Oribacterium sinus F0268]
 gi|227841759|gb|EEJ52042.1| signal recognition particle protein Ffh [Oribacterium sinus F0268]
          Length = 459

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 116/218 (53%), Gaps = 14/218 (6%)

Query: 104 NWDFSHRPH----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           N +   RP     V+++VG+ G GKTT   KL+ K      K +L A D +R AAI+QL+
Sbjct: 91  NTELKLRPQSEITVLMMVGLQGAGKTTTAAKLAGKFQKQHRKPLLVACDIYRPAAIEQLR 150

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           + A++ S  F           +A +A+++A+AK  ++LI+DTAGRL  +  LM       
Sbjct: 151 VNAEKLSIPFFSLGNQVKPEEIAKKAYEEAKAKGYNLLILDTAGRLQIDDALM------- 203

Query: 220 RVLKRLDPHAP--HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
             LKR+    P   ++L V DA TGQ A+   E F    G  G+I++K DG  RGG  + 
Sbjct: 204 EELKRMKSAVPVDWTILTV-DAMTGQEAVNVAESFSKEVGVNGVILSKCDGDTRGGAALS 262

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I      P+ +LG+GE ++DLEPF     +  I G  D
Sbjct: 263 IKAMTGQPILYLGMGEKLSDLEPFYPDRMAGRILGMGD 300


>gi|156844088|ref|XP_001645108.1| hypothetical protein Kpol_538p10 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115765|gb|EDO17250.1| hypothetical protein Kpol_538p10 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 577

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 109/207 (52%), Gaps = 6/207 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            + ++I+ VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A +    
Sbjct: 109 RKTNIIMFVGLQGSGKTTSCTKLAVYYQKRGFKVGLVCADTFRAGAFDQLKQNAIKAHIP 168

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F  S   +D   +A E   + + +K D++I+DT+GR      L     +MI +   +   
Sbjct: 169 FYGSYTEADPVRVASEGIAKFKKEKFDIIIVDTSGRHRQEEQLFQ---EMIEISNEI--- 222

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P+  + VLDA+ GQ A +Q + F   +    +I+TKMDG A+GGG I  V     P+ F
Sbjct: 223 KPNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHAKGGGAISAVAATNTPIIF 282

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE I+DLE F  K F + + G  D
Sbjct: 283 IGTGEHIHDLEKFSPKSFVSKLLGIGD 309


>gi|326480631|gb|EGE04641.1| signal recognition particle protein [Trichophyton equinum CBS
           127.97]
          Length = 534

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 149/301 (49%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   ++D+  S  +D    D + +E+   L+ +D+ V + Q++ + +        +   
Sbjct: 9   RINAAVSDLTRSNAVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQLPSIPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P ++PF      + +VI++VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--QLV-ALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D   ++ E   + + ++ 
Sbjct: 125 YQTQGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR      L   + ++   +K      P   + VLD+T GQ A  Q   F +
Sbjct: 185 DIIIVDTSGRHRQEEDLFTEMTQIQSAIK------PDQTIMVLDSTIGQAAETQSAAFKS 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V   + P+ FLG GE + DLE F  + F   + G  
Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPRPFVQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|257066792|ref|YP_003153048.1| signal recognition particle protein [Anaerococcus prevotii DSM
           20548]
 gi|256798672|gb|ACV29327.1| signal recognition particle protein [Anaerococcus prevotii DSM
           20548]
          Length = 445

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 154/305 (50%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F   S +L+E +  +     +S + +D  +RE +   L+ +D+   V +  V+ +  +  
Sbjct: 3   FEGLSERLQETLGKLTGKGKLSEKDIDAAMRE-IRLSLLEADVNYKVVKDFVKTIKERSL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +   +   S  PH++++VG+ G GKTT  GK
Sbjct: 62  GQDVMTSLSPGQMVVKIVNEELTALMGKENSKLDLKGST-PHMVMMVGLQGSGKTTHSGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+       ML A D +R AAI+QLK+   +T+   V  +   D    A EA   A+
Sbjct: 121 LALKLKKENRNPMLTALDIYRPAAIEQLKVVG-KTAGVEVFDKDKQDPVKTAREAKDYAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRL  ++ LM  +  +   +       P  +L V+DA TGQ A+   +
Sbjct: 180 LNNHDVVILDTAGRLQIDTDLMDELKNIKEAVN------PDEILLVVDAMTGQEAVNVAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + I      P+ F+GVGE + DLEPF     +  I
Sbjct: 234 TFDDYLDITGVVLTKLDGDARGGAALSIRQVVGKPIKFIGVGEKLEDLEPFHPDRMANRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|108763420|ref|YP_633013.1| signal recognition particle protein [Myxococcus xanthus DK 1622]
 gi|108467300|gb|ABF92485.1| signal recognition particle protein [Myxococcus xanthus DK 1622]
          Length = 548

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 153/323 (47%), Gaps = 35/323 (10%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEE 69
            +  +TKGF +   +L  G +++         V E L D+   L+ +D+   V +K V  
Sbjct: 1   MLETVTKGFRAAKNRLA-GKSELTPEL-----VDESLRDIRVSLLEADVAFDVVKKFVAR 54

Query: 70  LLTKRYAKDVSVQRVLYDVS-------------ELIHKMLMPLSKPFNWDFSHRPHV--- 113
           +  K   +   VQ  + D +             ++ H  L  L  P +     +P     
Sbjct: 55  VREKSVGE--LVQTTITDTAGQKRKVSPMDHFIKICHDELEALMGPVDTSLKLKPKGQLS 112

Query: 114 -ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            I++VG+ G GKTT  GKL+ ++   G K +L A D +R AA+DQLK+  +R     V  
Sbjct: 113 GIMMVGLQGSGKTTTTGKLASRLLQEGRKPLLVAADIYRPAAVDQLKVLGERLKVP-VYH 171

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E G     LA   +  A+ +K DV++IDTAGRL  +  LMA +  +   ++      P +
Sbjct: 172 EPGIQPPELAKRGYAAAREQKCDVVLIDTAGRLAIDESLMAELESIKGNVQ------PDN 225

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V DA  GQ+A+R    F       G I+TK+DG ARGG  + I      P+ FLG+G
Sbjct: 226 ILLVCDAMIGQDAVRTAAEFDRRLTLDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMG 285

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E ++ LE F     +  I G  D
Sbjct: 286 ESMDKLEEFRPAGLAGRILGFGD 308


>gi|5912327|emb|CAB56092.1| cell division protein [Rickettsia rhipicephali]
          Length = 136

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 2/136 (1%)

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++AY   +++  + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HSVL V+
Sbjct: 2   ASVAYRGMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDKNAPTHSVL-VI 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   QVE F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I D
Sbjct: 61  DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DF+  + G 
Sbjct: 121 LKIFNRHDFAKNLVGL 136


>gi|255655263|ref|ZP_05400672.1| signal recognition particle protein [Clostridium difficile
           QCD-23m63]
          Length = 452

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 6/208 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P ++++VG+ G GKTT  GKL       G K +L A D +R AAI QL++  ++   
Sbjct: 98  SKPPTILMMVGLQGAGKTTTAGKLGGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    +   +A      A     D++IIDTAGRLH + +LM  +  +   +K    
Sbjct: 158 PVFNMGDKENPVNIAKAGLSHAIKNANDLVIIDTAGRLHIDEVLMDELKSIKSEVK---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             PH +L V+D+ TGQ+A+   E F+   G  G+++TK+DG  RGG  + I    + P+ 
Sbjct: 214 --PHEILLVVDSMTGQDAVNVAESFNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G+GE ++D+EPF     ++ I G  D
Sbjct: 272 FMGMGEKLDDIEPFHPDRMASRILGMGD 299


>gi|153827348|ref|ZP_01980015.1| signal recognition particle protein [Vibrio cholerae MZO-2]
 gi|153830759|ref|ZP_01983426.1| signal recognition particle protein [Vibrio cholerae 623-39]
 gi|183179684|ref|ZP_02957895.1| signal recognition particle protein [Vibrio cholerae MZO-3]
 gi|229512829|ref|ZP_04402296.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae TMA
           21]
 gi|229520856|ref|ZP_04410278.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae TM
           11079-80]
 gi|229525220|ref|ZP_04414625.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae bv.
           albensis VL426]
 gi|229530373|ref|ZP_04419761.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           12129(1)]
 gi|254292068|ref|ZP_04962844.1| signal recognition particle protein [Vibrio cholerae AM-19226]
 gi|297580693|ref|ZP_06942619.1| signal recognition particle protein [Vibrio cholerae RC385]
 gi|148873768|gb|EDL71903.1| signal recognition particle protein [Vibrio cholerae 623-39]
 gi|149738743|gb|EDM53085.1| signal recognition particle protein [Vibrio cholerae MZO-2]
 gi|150422016|gb|EDN13987.1| signal recognition particle protein [Vibrio cholerae AM-19226]
 gi|183013095|gb|EDT88395.1| signal recognition particle protein [Vibrio cholerae MZO-3]
 gi|229332146|gb|EEN97634.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           12129(1)]
 gi|229338801|gb|EEO03818.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae bv.
           albensis VL426]
 gi|229342089|gb|EEO07085.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae TM
           11079-80]
 gi|229350078|gb|EEO15031.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae TMA
           21]
 gi|297535109|gb|EFH73944.1| signal recognition particle protein [Vibrio cholerae RC385]
          Length = 461

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A+    DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSSPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|5912319|emb|CAB56102.1| cell division protein [Rickettsia sibirica]
          Length = 136

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 2/136 (1%)

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVL 237
           A++AY   +++  + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP HSVL V+
Sbjct: 2   ASVAYHGMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVL-VI 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   QVE F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I D
Sbjct: 61  DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DF+  + G 
Sbjct: 121 LKIFNQHDFARNLVGL 136


>gi|56698078|ref|YP_168449.1| signal recognition particle protein [Ruegeria pomeroyi DSS-3]
 gi|56679815|gb|AAV96481.1| signal recognition particle protein [Ruegeria pomeroyi DSS-3]
          Length = 510

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 139/269 (51%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+ +  K   + V+      Q+V+  V + +  +L     P     
Sbjct: 38  LLEADVSLPVARDFVKAVQDKATGQAVTKSVTPGQQVVKIVHDTLVDVLRGAEDPGKLKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT   KL+K++ +  G KV++A+ D +R AA+DQL +   +  
Sbjct: 98  DNPPAPILMVGLQGGGKTTTTAKLAKRLKEREGKKVLMASLDVYRPAAMDQLAVLGAQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G     +A  A +QA     DV ++DTAGRLH + +LM  +  +  V+    
Sbjct: 158 VDTLPIVPGQKPVDIAKRAKQQAMMGGYDVYMLDTAGRLHIDQVLMQEVEDVRNVV---- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ A+   E F A  G +G+++T+MDG  RGG  + +      P+
Sbjct: 214 --TPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F  +  +  I G  D
Sbjct: 272 RFVGLGEKMDALETFEPERIAGRILGMGD 300


>gi|148906612|gb|ABR16458.1| unknown [Picea sitchensis]
          Length = 573

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 164/347 (47%), Gaps = 54/347 (15%)

Query: 17  LTKGFASTSLKLKEGITDIIS--------SRRLDDG---VREEL---------------- 49
           L+ GF+S+SL  KE   ++I         +RR+  G   VR E+                
Sbjct: 43  LSVGFSSSSLFQKEKCLELIHCQTKWGLVNRRIRHGSDLVRAEMFGQLTTSLEAAWSKLS 102

Query: 50  -EDLLIRS-------DIGVAVAQKIVEELLTKRYAKDVSVQ----------RVLYDVSEL 91
            +D+L R        DI  A+ +  V   + +R+ K V+ Q          R    + ++
Sbjct: 103 KQDVLTRENMAEPMRDIRRALLEADVSLPVVRRFVKVVTEQAIGVGVVPGVRSDQQLVKV 162

Query: 92  IHKMLMPL--SKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++  L+ L   +    DF+   P VIL+ G+ GVGKTT   KL+  +   G   ML A D
Sbjct: 163 VNDELVKLMGGEVAELDFAKTGPTVILMAGLQGVGKTTACAKLALYLKKKGKNCMLVAAD 222

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +R AAIDQL I   +       +        +A +  ++A+ K +DV+I+DTAGRL  +
Sbjct: 223 VYRPAAIDQLVILGKQVEVPVYEAGTKVTPMEIAKQGLEEAKKKDMDVVIVDTAGRLQVD 282

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M  + ++ + +       P  VL V+DA TGQ A   V  F+   G TG I+TK+DG
Sbjct: 283 KSMMDELKQVKQAMN------PTEVLLVVDAMTGQEAAALVAAFNLEIGITGAILTKLDG 336

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +RGG  + +      P+ F+G GE + DLEPF     ++ I G  D
Sbjct: 337 DSRGGAALSVREVSGKPIKFVGQGERMEDLEPFYPDRMASRILGMGD 383


>gi|118370390|ref|XP_001018396.1| signal recognition particle 54 kDa protein 1, SRP54 [Tetrahymena
           thermophila]
 gi|89300163|gb|EAR98151.1| signal recognition particle 54 kDa protein 1, SRP54 [Tetrahymena
           thermophila SB210]
          Length = 518

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 139/275 (50%), Gaps = 11/275 (4%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD---VSVQRVLYD-VSELIHKMLMPLS 100
           V +E++  L++SD+ V    K+   ++ K   +D   V++++++   V + + +ML    
Sbjct: 31  VLKEIQLALLQSDVNVKYVAKLKSNIIMKFKMEDSQGVNLKKMIQQAVVQELTQMLDSNK 90

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           KPF      +P+V++ VG+ G GKTT   K +      G +  L   DTFR+ A DQLK 
Sbjct: 91  KPF-VPKRGKPNVVMFVGLQGAGKTTTCTKYAYHWQKKGWRTALICADTFRAGAFDQLKQ 149

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A +    F  S   +D  A+A E  K  + +  +++I+DT+GR    S L     +M +
Sbjct: 150 NATKVRVPFYGSYSETDPVAIAEEGVKHFKKENYEMIIVDTSGRHKQESEL---FDEMKQ 206

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V   ++   P   + V+D + GQ    Q + F        +I+TK+DG A+GGG +  V 
Sbjct: 207 VQAAVN---PDECIFVMDGSIGQACYDQAQAFRNAVNVGSVIITKLDGHAKGGGALSAVA 263

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + P+ F+G GE   DLEPF  + F   + G  D
Sbjct: 264 ATESPIIFIGTGEHFEDLEPFNPESFVKRLLGLGD 298


>gi|326469041|gb|EGD93050.1| signal recognition particle 54K protein [Trichophyton tonsurans CBS
           112818]
          Length = 534

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 149/301 (49%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   ++D+  S  +D    D + +E+   L+ +D+ V + Q++ + +        +   
Sbjct: 9   RINAAVSDLTRSNAVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQLPSIPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P ++PF      + +VI++VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--QLV-ALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D   ++ E   + + ++ 
Sbjct: 125 YQTKGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR      L   + ++   +K      P   + VLD+T GQ A  Q   F +
Sbjct: 185 DIIIVDTSGRHRQEEDLFTEMTQIQSAIK------PDQTIMVLDSTIGQAAETQSAAFKS 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V   + P+ FLG GE + DLE F  + F   + G  
Sbjct: 239 AADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPRPFVQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|296451248|ref|ZP_06892988.1| signal recognition particle protein [Clostridium difficile NAP08]
 gi|296880400|ref|ZP_06904363.1| signal recognition particle protein [Clostridium difficile NAP07]
 gi|296259854|gb|EFH06709.1| signal recognition particle protein [Clostridium difficile NAP08]
 gi|296428641|gb|EFH14525.1| signal recognition particle protein [Clostridium difficile NAP07]
          Length = 450

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 6/208 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P ++++VG+ G GKTT  GKL       G K +L A D +R AAI QL++  ++   
Sbjct: 98  SKPPTILMMVGLQGAGKTTTAGKLGGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    +   +A      A     D++IIDTAGRLH + +LM  +  +   +K    
Sbjct: 158 PVFNMGDKENPVNIAKAGLSHAIKNANDLVIIDTAGRLHIDEVLMDELKSIKSEVK---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             PH +L V+D+ TGQ+A+   E F+   G  G+++TK+DG  RGG  + I    + P+ 
Sbjct: 214 --PHEILLVVDSMTGQDAVNVAESFNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G+GE ++D+EPF     ++ I G  D
Sbjct: 272 FMGMGEKLDDIEPFHPDRMASRILGMGD 299


>gi|22299516|ref|NP_682763.1| signal recognition particle protein [Thermosynechococcus elongatus
           BP-1]
 gi|22295699|dbj|BAC09525.1| signal recognition particle protein [Thermosynechococcus elongatus
           BP-1]
          Length = 469

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 145/293 (49%), Gaps = 25/293 (8%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D I+   + + +RE +   L+ +D+ + VA+  +E +  +    +V           +++
Sbjct: 20  DKITENNIQEALRE-VRRALLEADVNLQVAKDFIENVRQRAIGAEVIAGVRPDQQFIKIV 78

Query: 86  YD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           YD + E++ +   PL+          P +IL+ G+ G GKTT   KL+  +   G   +L
Sbjct: 79  YDALVEVMGESHSPLAH-----VEPPPTIILMAGLQGTGKTTATAKLALHLRKEGRSTLL 133

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTA 202
            A D +R AAIDQL     +        E+G++ +   +A +   +A+   VD +IIDTA
Sbjct: 134 VATDVYRPAAIDQLMTLGKQIGVPVF--EMGTEVSPVEIARQGVAKAKELGVDTVIIDTA 191

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL  ++ +MA +  +   ++      PH  L V+DA TGQ A      FH   G TG I
Sbjct: 192 GRLQIDAEMMAELAAIKEGVQ------PHETLLVVDAMTGQEAANLTRAFHEQVGITGAI 245

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +TK+DG  RGG  + +      P+ F+GVGE +  L+PF     ++ I G  D
Sbjct: 246 LTKLDGDTRGGAALSVRQVSGQPIKFIGVGEKVEALQPFYPDRLASRILGMGD 298


>gi|218961871|ref|YP_001741646.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730528|emb|CAO81440.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Candidatus Cloacamonas acidaminovorans]
          Length = 446

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 147/279 (52%), Gaps = 18/279 (6%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL---YDVSELIHKMLMPL- 99
           G+RE +   L+ +D+   + +  + E+  ++ A  V V + L     V +++++ L+ L 
Sbjct: 30  GLRE-VRMALLEADVNFRIVKNFIAEV--EKRALGVEVMKSLTPGQQVVKIVYEQLVNLM 86

Query: 100 -SKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            ++ F +  F++R   +++VG+ G GKTT   KL+      G+K ML A D +R AA+DQ
Sbjct: 87  DTEGFQFKVFNNRLTKVMLVGLQGSGKTTACAKLAAFYRKKGIKPMLVACDVYRPAAVDQ 146

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LKI   +     V SE   +   +A  A   A  + V++LI DTAGRLH +  +M  +  
Sbjct: 147 LKILGKQIGIP-VVSEDTKNVLKIADSALSMADKEMVNLLIFDTAGRLHIDEPMMEEVA- 204

Query: 218 MIRVLKRLDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
                 RL  H  P  +  V DATTGQ+A+   + F+       +I+TK+DG ARGG  +
Sbjct: 205 ------RLKTHIKPDYIFFVADATTGQDAVTIAKEFYDKLAFDAVILTKLDGDARGGAAL 258

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I      PV F+G+GE I+DLE F     ++ I G  D
Sbjct: 259 SIKAVTGKPVAFVGIGEKISDLEIFYPDRMASRILGMGD 297


>gi|254227080|ref|ZP_04920636.1| signal recognition particle protein [Vibrio cholerae V51]
 gi|125620406|gb|EAZ48784.1| signal recognition particle protein [Vibrio cholerae V51]
          Length = 372

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A+    DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|113476149|ref|YP_722210.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Trichodesmium erythraeum IMS101]
 gi|110167197|gb|ABG51737.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Trichodesmium erythraeum IMS101]
          Length = 483

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 142/279 (50%), Gaps = 24/279 (8%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD-VSELIHKMLMP 98
           E+   L+ +D+ + V +  + E+ +K    DV           ++++D +++++ +   P
Sbjct: 33  EVRRALLEADVNLQVVKGFIAEVSSKAKGADVLTGVRPDQQFIKIVHDELAQIMGESNAP 92

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           L+K         P ++L+ G+ G GKTT   KL+  +       +L A D +R AAIDQL
Sbjct: 93  LAKA-----DQPPTIVLMAGLQGTGKTTASAKLALHLRKENRSALLVATDVYRPAAIDQL 147

Query: 159 KIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
                +   D    E+G+D     +A +  ++A+A  +D++IIDTAGRL  +  +MA + 
Sbjct: 148 VTLGKQI--DVPVFELGTDIDPVEIAQKGLEKAKADGIDIVIIDTAGRLQIDQDMMAELA 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           ++   +K      P   L V+DA TGQ A      F+   G TG I+TKMDG  RGG  +
Sbjct: 206 RIKAAVK------PQETLLVVDAMTGQEAATLTRTFNDQIGITGAILTKMDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +      P+ F+GVGE +  L+PF  +  ++ I G  D
Sbjct: 260 SVRRISGQPIKFIGVGEKVEALQPFYPERMASRILGMGD 298


>gi|255100269|ref|ZP_05329246.1| signal recognition particle protein [Clostridium difficile
           QCD-63q42]
 gi|255306209|ref|ZP_05350381.1| signal recognition particle protein [Clostridium difficile ATCC
           43255]
          Length = 450

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 6/208 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P ++++VG+ G GKTT  GKL       G K +L A D +R AAI QL++  ++   
Sbjct: 98  SKPPTILMMVGLQGAGKTTTAGKLGGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    +   +A      A     D++IIDTAGRLH + +LM  +  +   +K    
Sbjct: 158 PVFNMGDKENPVNIAKAGLSHAIKNANDLVIIDTAGRLHIDEVLMDELKSIKSEVK---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             PH +L V+D+ TGQ+A+   E F+   G  G+++TK+DG  RGG  + I    + P+ 
Sbjct: 214 --PHEILLVVDSMTGQDAVNVAESFNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G+GE ++D+EPF     ++ I G  D
Sbjct: 272 FMGMGEKLDDIEPFHPDRMASRILGMGD 299


>gi|146304520|ref|YP_001191836.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Metallosphaera sedula DSM 5348]
 gi|172046932|sp|A4YHL0|SRP54_METS5 RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|145702770|gb|ABP95912.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Metallosphaera sedula DSM 5348]
          Length = 446

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 157/316 (49%), Gaps = 42/316 (13%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV----AVAQKIVEE 69
           +RK   G  S  + ++E I DI              +  LI SD+ V    ++  KI E 
Sbjct: 9   VRKFLGGNTSYEVAVEEFIKDI--------------QKALISSDVQVKLVFSLTNKIKER 54

Query: 70  LLTKRYAKDVSVQ----RVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           L  +    ++  +    +++YD +S L      P   P        P VI++VGV G GK
Sbjct: 55  LKKETPPSNLERREWFIKIVYDELSALFGGDKEPEVNP-----KSIPWVIMLVGVQGTGK 109

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAY 183
           TT  GKL+      G KV L   D +R AA++QL+    + +   V  E GS DA  +A 
Sbjct: 110 TTTAGKLAYFYKKRGYKVALVGADVYRPAALEQLQQIGKQINVP-VYGEPGSQDAVGIAK 168

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL----DPHAPHSVLQVLDA 239
              ++  +++ +++I+DTAGR         G G+ +++L+ +    +   P+ V+ V+DA
Sbjct: 169 RGVEKFLSERYELVIVDTAGR--------HGYGEEVKLLEEMKDIYEKIKPNEVILVIDA 220

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQ A    + FH  +    +I+TKMDGTA+GGG +  V     P+ F+GVGE I++LE
Sbjct: 221 SLGQKAYDLAKRFHEASNVGSIIITKMDGTAKGGGALSAVAATGAPIKFIGVGEKIDELE 280

Query: 300 PFVAKDFSAVITGCLD 315
            F  + F A I G  D
Sbjct: 281 VFNPRRFVARILGMGD 296


>gi|255262300|ref|ZP_05341642.1| signal recognition particle protein [Thalassiobium sp. R2A62]
 gi|255104635|gb|EET47309.1| signal recognition particle protein [Thalassiobium sp. R2A62]
          Length = 499

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 159/309 (51%), Gaps = 24/309 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL--DDGVREELEDL---LIRSDIGVAVAQKIVE------- 68
           F S S +L  G+ D ++ +    +D V+  L ++   L+ +D+ + VA+  V+       
Sbjct: 2   FGSLSDRL-SGVFDKLTKQGALSEDDVKTALREVRVALLEADVSLPVARDFVKAVQDKAT 60

Query: 69  -ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            + +TK       V ++++D  ELIH +L  +  P        P  IL+VG+ G GKTT 
Sbjct: 61  GQAVTKSVTPGQQVVKIVHD--ELIH-VLTGVGDPSALKIDSPPAPILMVGLQGSGKTTT 117

Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL+K++ D  G +V++A+ D  R AA++QL+I   +   D +    G D  A+A  A 
Sbjct: 118 TAKLAKRLKDREGKRVLMASLDVNRPAAMEQLQILGAQIGVDTLPIVKGEDPVAIAKRAK 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            QA     DV ++DTAGRLH +  L+A     +R     D   P   L V+D  TGQ+A+
Sbjct: 178 TQASLGGYDVYMLDTAGRLHIDQELIAQ-ASAVR-----DVANPRETLLVVDGLTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              E F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F  +  
Sbjct: 232 NVAEEFDNNIGVSGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGLGEKMDAIEEFHPERI 291

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 292 AGRILGMGD 300


>gi|239994644|ref|ZP_04715168.1| signal recognition particle protein [Alteromonas macleodii ATCC
           27126]
          Length = 479

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 160/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + ++    RL +D ++E L ++   L+ +D+ + V +  V ++  +   
Sbjct: 2   FENLSERLGQTLRNVSGKGRLTEDNIKETLREVRMALLEADVALPVVKAFVAQVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +  ++   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  TEVTKSLKPGQVFIKIVQSELESVMGEANEKLNL-ATQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +++    KVM+ + D +R AAI QL+  A   +  F  S I      +  +A  +A+
Sbjct: 121 AKYLTEREKKKVMVVSADVYRPAAIKQLETLAGEVNVAFHPSTILQKPIDIVNDAIVEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRLH ++ +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 KNFFDVLLVDTAGRLHVDNDMMDEIKELHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ F+G+GE ++ LEPF  +  ++ I
Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRHITGKPIKFIGMGEKVDALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|193084084|gb|ACF09754.1| signal recognition particle subunit Ffh SRP54 [uncultured marine
           group III euryarchaeote AD1000-40-D7]
          Length = 444

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 111/205 (54%), Gaps = 8/205 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P  I++VG+ G GKTT  GKL K     GL + L A D  R AA DQL    ++      
Sbjct: 97  PQKIMLVGLYGQGKTTTTGKLGKHFKKKGLNLGLIAADVHRPAAFDQLSQIGEQIQVPVF 156

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S    DAA +  E  K+    ++DV+I+DTAGR   +  L++ +  + ++++      P
Sbjct: 157 GSSDNKDAAKVVKEGLKEF--TELDVVIVDTAGRHALDEELISEMKSISKIVQ------P 208

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+DAT GQ A  Q + FH   G +G+I+TK+DG+A+GGG +  V   K P+ F+G
Sbjct: 209 DEILLVMDATVGQQAGPQAQAFHDAVGVSGVILTKLDGSAKGGGALSAVAVTKAPIVFVG 268

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE ++ LE      F + + G  D
Sbjct: 269 TGESLDSLETLDPDRFISRLLGMGD 293


>gi|302185524|ref|ZP_07262197.1| Signal recognition particle protein [Pseudomonas syringae pv.
           syringae 642]
          Length = 458

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 153/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVK------PAETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|261365904|ref|ZP_05978787.1| signal recognition particle protein [Neisseria mucosa ATCC 25996]
 gi|288565515|gb|EFC87075.1| signal recognition particle protein [Neisseria mucosa ATCC 25996]
          Length = 456

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 151/283 (53%), Gaps = 16/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKML 96
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V+   +  D +   ++++ L
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVT-GSLTPDQAFIGVVNQAL 82

Query: 97  MPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           + L    N      +  P V+L+ G+ G GKTT +GKL++ + ++   KV++ + D +R 
Sbjct: 83  IELMGKENSSLDLAAVPPAVVLMAGLQGAGKTTTVGKLARLLKNEQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGIDFFPSDANQKPVEIATAAIDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             I  +   +K      P   L V+DA  GQ+A+   + F+     TG+I+TKMDG +RG
Sbjct: 203 NEIKALHAAVK------PVETLFVVDAMLGQDAVNTAQAFNEALPLTGVILTKMDGDSRG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F+G+GE I  LEPF     ++ I G  D
Sbjct: 257 GAALSVRHVTGKPIKFIGIGEKITGLEPFYPDRIASRILGMGD 299


>gi|294507645|ref|YP_003571703.1| signal recognition particle protein [Salinibacter ruber M8]
 gi|294343973|emb|CBH24751.1| signal recognition particle protein [Salinibacter ruber M8]
          Length = 461

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 110/209 (52%), Gaps = 10/209 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VILV G+ G GKTT   KL++     G   +LAA D +R AA+DQLK  AD+ +A   
Sbjct: 100 PTVILVAGLQGSGKTTFCAKLARHFRKEGHAPLLAASDVYRPAAVDQLKTLADQVNAPVY 159

Query: 171 C----SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 EI  DA  +A EA  +AQ    D++IIDTAGR+H +  +M  +  +   +    
Sbjct: 160 SIEDDGEIVEDAVRVANEAVAEAQNTARDIVIIDTAGRMHIDEAMMQEVEDIKTTV---- 215

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             AP+  L V+D+ TGQ+A+   + F+      G++++K+DG  RGG  + I      P+
Sbjct: 216 --APNETLFVVDSMTGQDAVNTAKEFNERIDYDGVVLSKLDGDTRGGAALSIRTVVNKPI 273

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F   GE ++ L PF     +  I G  D
Sbjct: 274 KFASTGEKLDALTPFYPDRMAQRILGMGD 302


>gi|195952674|ref|YP_002120964.1| signal recognition particle protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932286|gb|ACG56986.1| signal recognition particle protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 435

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 146/281 (51%), Gaps = 10/281 (3%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           ++ + ++D +R+ +   L+ +D+   VA+  ++ L  + +++++       D+  +I  +
Sbjct: 22  LNEKLVNDTLRD-IRAALLEADVDYDVAKDFIKRLRERIFSEEIKTHLSPTDM--IIMSV 78

Query: 96  LMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
              L K    + S     V++ VG+ G GKTT IGKL+  M   G  VM  + D  R AA
Sbjct: 79  YDELVKTLGGNASPLEEGVVMFVGLQGTGKTTTIGKLANLMKKNGRSVMTVSTDVRRPAA 138

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           + QLK  ++    +++      +   +A EAF+  ++KK D L +DTAGRLH ++ LM  
Sbjct: 139 MLQLKRVSELAGVEYLEFSPDKNPVDIAKEAFEAFKSKKYDYLFLDTAGRLHIDNELMEE 198

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           +  +   +K      P  V+ V D+  GQ AL   + F+ V G TG I+TKMDG  RGG 
Sbjct: 199 LRAIKEAVK------PSEVIYVADSMQGQEALSVAKTFNEVVGLTGAILTKMDGDTRGGV 252

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + I     IP+ ++GVGE + D++ F     +  I G  D
Sbjct: 253 ALSIKDAIGIPIKYIGVGEKLEDIDQFYPDRIAQRILGLGD 293


>gi|313885163|ref|ZP_07818915.1| signal recognition particle protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619854|gb|EFR31291.1| signal recognition particle protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 489

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 122/236 (51%), Gaps = 9/236 (3%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD--AG 139
           Q+V+  V E +  ++    +P N   S  P V+++VG+ G GKTT +GKL+K +++    
Sbjct: 73  QQVVKIVDEELTDLMGGEREPLNM-ASQPPTVMMMVGLQGAGKTTTVGKLAKYITEELGK 131

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            K +L AGD +R AA+DQLK    +   +            +A  A  QA+     V+II
Sbjct: 132 KKPLLVAGDVYRPAAVDQLKTIGQQLGFEVYDEGTQVSPVEIAKRALDQAKLNGNQVVII 191

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH N  LM  +  +   +       P  +L  +DA TGQ+A+   + F+     T
Sbjct: 192 DTAGRLHVNEELMDELRNIKAAVN------PDEILLTVDAMTGQDAVNVADAFNEALDIT 245

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G+++TK+DG  RGG  + I      P+ F G GE ++ LEPF     S+ I G  D
Sbjct: 246 GVVITKLDGDTRGGAALSIRSIIDKPIKFTGQGEKLDALEPFYPDRMSSRILGMGD 301


>gi|312962854|ref|ZP_07777341.1| signal recognition particle protein [Pseudomonas fluorescens WH6]
 gi|311282881|gb|EFQ61475.1| signal recognition particle protein [Pseudomonas fluorescens WH6]
          Length = 458

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 155/309 (50%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D +     P V+L+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVVLMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL++ A      F  S++      +A  A K+A
Sbjct: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLEMLAGEVGVTFFPSDLSQKPVDIANAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K +DV+I+DTAGRLH +  +M  I  +         HA   P   L V+DA TGQ+A 
Sbjct: 180 RLKFIDVVIVDTAGRLHIDEEMMGEIKAL---------HAAINPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF  +  
Sbjct: 231 NTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPERI 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|121591120|ref|ZP_01678429.1| signal recognition particle protein [Vibrio cholerae 2740-80]
 gi|147674906|ref|YP_001216059.1| signal recognition particle protein [Vibrio cholerae O395]
 gi|153820246|ref|ZP_01972913.1| signal recognition particle protein [Vibrio cholerae NCTC 8457]
 gi|227080743|ref|YP_002809294.1| signal recognition particle protein [Vibrio cholerae M66-2]
 gi|229507171|ref|ZP_04396677.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae BX
           330286]
 gi|262169869|ref|ZP_06037559.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           RC27]
 gi|262401736|ref|ZP_06078302.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. RC586]
 gi|121547038|gb|EAX57179.1| signal recognition particle protein [Vibrio cholerae 2740-80]
 gi|126509208|gb|EAZ71802.1| signal recognition particle protein [Vibrio cholerae NCTC 8457]
 gi|146316789|gb|ABQ21328.1| signal recognition particle protein [Vibrio cholerae O395]
 gi|227008631|gb|ACP04843.1| signal recognition particle protein [Vibrio cholerae M66-2]
 gi|227012386|gb|ACP08596.1| signal recognition particle protein [Vibrio cholerae O395]
 gi|229355916|gb|EEO20836.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae BX
           330286]
 gi|262021603|gb|EEY40314.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           RC27]
 gi|262352153|gb|EEZ01283.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. RC586]
          Length = 461

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A+    DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|260495487|ref|ZP_05815613.1| signal recognition particle protein [Fusobacterium sp. 3_1_33]
 gi|260197024|gb|EEW94545.1| signal recognition particle protein [Fusobacterium sp. 3_1_33]
          Length = 443

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P +I++ G+ G GKTT   KL+K +     K++L   D +R AAI QL++   +   D
Sbjct: 98  RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E   D   +A  A ++A+      +I+DTAGRLH +  LM  + ++ + +K     
Sbjct: 158 VYSEENSKDVVGIATRAIEKAKEINATYMIVDTAGRLHVDETLMEELKELKKAIK----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +L V+DA  GQ+A+   E F+      G+I+TK+DG  RGG  + I      P+ F
Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE +ND+E F      + I G  D
Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298


>gi|83814688|ref|YP_445750.1| signal recognition particle protein [Salinibacter ruber DSM 13855]
 gi|83756082|gb|ABC44195.1| signal recognition particle protein [Salinibacter ruber DSM 13855]
          Length = 461

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 110/209 (52%), Gaps = 10/209 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VILV G+ G GKTT   KL++     G   +LAA D +R AA+DQLK  AD+ +A   
Sbjct: 100 PTVILVAGLQGSGKTTFCAKLARHFRKEGHAPLLAASDVYRPAAVDQLKTLADQVNAPVY 159

Query: 171 C----SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 EI  DA  +A EA  +AQ    D++IIDTAGR+H +  +M  +  +   +    
Sbjct: 160 SIEDDGEIVEDAVRVANEAVTEAQNTARDIVIIDTAGRMHIDEAMMQEVEDIKTTV---- 215

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             AP+  L V+D+ TGQ+A+   + F+      G++++K+DG  RGG  + I      P+
Sbjct: 216 --APNETLFVVDSMTGQDAVNTAKEFNERIDYDGVVLSKLDGDTRGGAALSIRTVVNKPI 273

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F   GE ++ L PF     +  I G  D
Sbjct: 274 KFASTGEKLDALTPFYPDRMAQRILGMGD 302


>gi|66044529|ref|YP_234370.1| Signal recognition particle protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255236|gb|AAY36332.1| Signal recognition particle protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|330969028|gb|EGH69094.1| signal recognition particle protein [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 458

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 153/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    
Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVK------PAETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|303244260|ref|ZP_07330597.1| GTP-binding signal recognition particle SRP54 G- domain
           [Methanothermococcus okinawensis IH1]
 gi|302485387|gb|EFL48314.1| GTP-binding signal recognition particle SRP54 G- domain
           [Methanothermococcus okinawensis IH1]
          Length = 456

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 147/284 (51%), Gaps = 16/284 (5%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           ++L   V ++++  LI++D+ V +  K+ +E+  +   +D+       + ++  V E + 
Sbjct: 30  KKLIKEVIKDIQKALIQADVNVKLVFKMSKEIEKRAINEDIPKGLSKKEHIIKIVYEELV 89

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K+L    +    +   + ++IL+VG+ G GKTT   KL++ +   GLK  L A D +R A
Sbjct: 90  KLLGEEGQKLELN-PKKQNIILLVGIQGSGKTTSAAKLARYIQKRGLKPGLIAADIYRPA 148

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAA-ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           A  QLK  A++        E  +     +A E  K    KK+DVLIIDTAGR    + L+
Sbjct: 149 AYQQLKQLAEKIHVPLYGDETKTKTPMEIAKEGIKNL--KKMDVLIIDTAGRHKEETGLL 206

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM-TKMDGTAR 271
             + ++  V+       P  ++ V+D T GQ A  Q + F    G  G I+ TK+DG+A+
Sbjct: 207 EEMKQIKDVVN------PDEIILVIDGTLGQQAKNQAKAFKDAVGEIGSILVTKLDGSAK 260

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GGG +  V     P+ F+G GE ++DLEPF    F + + G  D
Sbjct: 261 GGGALSAVAEINAPIKFIGTGENVDDLEPFDPNKFISRLLGMGD 304


>gi|227892628|ref|ZP_04010433.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus ultunensis
           DSM 16047]
 gi|227865560|gb|EEJ72981.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus ultunensis
           DSM 16047]
          Length = 476

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 137/269 (50%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  ++ +  +   K+V       Q+V+  V+E + KM+   + P N   
Sbjct: 39  LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            H P +I++VG+ G GKTT +GKL+  +      + +L AGD +R AA+DQLK   ++  
Sbjct: 98  KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGEQLK 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D A +  +   +A   K D ++IDTAGRL  +  LM  + ++ +V +   
Sbjct: 158 VPVFSEDGEKDVAKIVKDGLAEADKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAQ--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P ++L V+DA TGQ A    + F      TG+I+TK+DG  RGG  + I      P+
Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G GE + DL+ F     ++ I G  D
Sbjct: 272 LFTGQGEKLTDLDVFHPDRMASRILGMGD 300


>gi|282898237|ref|ZP_06306228.1| Signal recognition particle protein [Raphidiopsis brookii D9]
 gi|281196768|gb|EFA71673.1| Signal recognition particle protein [Raphidiopsis brookii D9]
          Length = 480

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 147/295 (49%), Gaps = 29/295 (9%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D IS   + D +RE +   L+ +D+ + V +  + ++  K    +V           +++
Sbjct: 20  DKISQTNIQDALRE-VRRALLEADVNLQVVKDFIVDVENKAQGAEVISGVRPDQQFIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL++        +  VIL+ G+ G GKTT   KL+  +       
Sbjct: 79  YD--ELVQVMGEENVPLAQA-----QDKTTVILMAGLQGTGKTTATAKLALHLRKTNRSC 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200
           +L A D +R AAIDQL     +   D    E+GSDA    +A +  ++A+ + ++ +I+D
Sbjct: 132 LLVATDVYRPAAIDQLVTLGKQV--DVPVFEMGSDADPVEIARQGVERARNEGINTVIVD 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  +MA + ++   ++      P   L V+DA TGQ A      FH   G TG
Sbjct: 190 TAGRLQIDQDMMAELSRIKSTIE------PDETLLVVDAMTGQEAANLTRTFHEQIGITG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I+TKMDG +RGG  + +      P+ F+GVGE +  L+PF     ++ I G  D
Sbjct: 244 AILTKMDGDSRGGAALSVRQISGAPIKFIGVGEKVEALQPFYPDRMASRILGMGD 298


>gi|326771786|ref|ZP_08231071.1| signal recognition particle protein [Actinomyces viscosus C505]
 gi|326637919|gb|EGE38820.1| signal recognition particle protein [Actinomyces viscosus C505]
          Length = 561

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 130/240 (54%), Gaps = 13/240 (5%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           Q+V+  V+E + ++L   ++  +W     P +I++ G+ G GKTT+ GKL + + D G +
Sbjct: 72  QQVVKIVNEELIEVLGGQTREIHW-ADRGPTIIMLAGLQGAGKTTLAGKLGRWLRDQGKR 130

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLI 198
           V+L A D  R  A+ QL + A+R        E G+   D  A+A    + A+    DV++
Sbjct: 131 VLLVASDLQRPNAVTQLSVVAERAGVHVWAPEPGNGVGDPVAVARSGVEHARTNGYDVVV 190

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL  ++ +M    + IR+    D  +PH +L VLDA  GQ+A+     F    G 
Sbjct: 191 VDTAGRLGVDAEMM---DQAIRIR---DAVSPHEILFVLDAMVGQDAVNTSVAFRDGVGF 244

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           TG++++K+DG ARGG  + +      PV F   GEG+ D E F A   ++ I   LD G+
Sbjct: 245 TGVVLSKLDGDARGGAALSVRGVTGAPVLFSSTGEGLTDFERFHADRMASRI---LDMGD 301


>gi|291542195|emb|CBL15305.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ruminococcus
           bromii L2-63]
          Length = 469

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 155/287 (54%), Gaps = 18/287 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           +S + + + +RE +   L+ +D+   VA+    ++  +   +DV       Q V+  V E
Sbjct: 23  LSEKDVKEAMRE-VRLALLEADVNYKVAKDFTNKVTERAVGQDVMQSLTPAQMVVKIVDE 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            +  ++    +    +F+ +P  VI++ G+ G GKTT   KL+K +   G   +LAA D 
Sbjct: 82  ELTSLMG--GEDARIEFASKPPTVIMMCGLQGSGKTTHTAKLAKMLKKQGRNPLLAACDV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           +R AAIDQLK+  ++  A     E+G ++   +A EA K+A+    DV+I+DTAGRLH +
Sbjct: 140 YRPAAIDQLKVVGEK--AGVPVFEMGKANPVKIAKEAIKRAKDYGNDVVILDTAGRLHID 197

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  +  + + ++      P+ +L V+D+ TGQ+A+   + F+ +   TG+I+TK+DG
Sbjct: 198 EALMDELKNIKKEVE------PNEILLVIDSMTGQDAVNVAKSFNELLDITGVILTKLDG 251

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             RGG  + +      P+ F G GE ++D+E F     ++ I G  D
Sbjct: 252 DTRGGAALSVKAVTGRPIKFAGTGEKLDDIEVFHPDRMASRILGMGD 298


>gi|219121088|ref|XP_002185775.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582624|gb|ACI65245.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 510

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 107/209 (51%), Gaps = 12/209 (5%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+V+L VG+ G GKTT I K +      G K  +   DTFR+ A DQLK  A +    F
Sbjct: 113 KPNVVLFVGLQGAGKTTSIAKFAHYYQRRGWKTAMVCADTFRAGAFDQLKQNATKLRVPF 172

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLD 226
             S   +D   +A +  +Q    + +V+I+DT+GR    S L   M  I + +R      
Sbjct: 173 YGSYTEADPVVIAEDGVRQFVKDRYEVIIVDTSGRHKQESALFDEMQEISEAVR------ 226

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P + + V+DAT GQ    Q   FH       +I+TK+DG A+GGG +  V     P+
Sbjct: 227 ---PDNTVLVMDATQGQAVYDQALAFHNAVDVGAVIVTKLDGHAKGGGALSAVAATSSPI 283

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLG GE  +DL+PF A+ F + + G  D
Sbjct: 284 LFLGSGEHFDDLDPFNAQSFVSKLLGFGD 312


>gi|2772967|gb|AAC08878.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772969|gb|AAC08879.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772971|gb|AAC08880.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772973|gb|AAC08881.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772975|gb|AAC08882.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772977|gb|AAC08883.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772979|gb|AAC08884.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772981|gb|AAC08885.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772983|gb|AAC08886.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772985|gb|AAC08887.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772987|gb|AAC08888.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772989|gb|AAC08889.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772991|gb|AAC08890.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772993|gb|AAC08891.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772995|gb|AAC08892.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772997|gb|AAC08893.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772999|gb|AAC08894.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773001|gb|AAC08895.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773003|gb|AAC08896.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773005|gb|AAC08897.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773007|gb|AAC08898.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773009|gb|AAC08899.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773011|gb|AAC08900.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773013|gb|AAC08901.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773015|gb|AAC08902.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773017|gb|AAC08903.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773019|gb|AAC08904.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773021|gb|AAC08905.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773025|gb|AAC08907.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773027|gb|AAC08908.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773029|gb|AAC08909.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773031|gb|AAC08910.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773033|gb|AAC08911.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773035|gb|AAC08912.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773037|gb|AAC08913.1| regulatory protein PilA [Neisseria meningitidis]
          Length = 144

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/143 (45%), Positives = 93/143 (65%), Gaps = 1/143 (0%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           PL KP     +  P VI++ G+NG GKTT IGKL+K     G  V+LAAGDTFR+AA +Q
Sbjct: 2   PLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQ 61

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+ W +R +   V S+   D+AA+ ++A + A+A+ +D+++ DTAGRL     LM  I K
Sbjct: 62  LQAWGERNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKK 120

Query: 218 MIRVLKRLDPHAPHSVLQVLDAT 240
           + RVL++  P APH ++ VLDA 
Sbjct: 121 VKRVLQKAMPDAPHEIIVVLDAN 143


>gi|262196637|ref|YP_003267846.1| signal recognition particle protein [Haliangium ochraceum DSM
           14365]
 gi|262079984|gb|ACY15953.1| signal recognition particle protein [Haliangium ochraceum DSM
           14365]
          Length = 568

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 157/318 (49%), Gaps = 33/318 (10%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLT- 72
           L KGF S   +L  G+ ++      DD + E L D+   L+ +D+  +V ++ +E +   
Sbjct: 5   LAKGFRSAKQRL-SGVAELD-----DDIIEEALRDVRMSLLEADVEFSVTKRFLERVREA 58

Query: 73  --------KRYAKDVSVQRVLYD------VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
                   K  +++  V+ +  D        + +  M+ P+     W     P  I++VG
Sbjct: 59  ARGERVQLKAKSQEYGVKTITPDQAFVKICQDELSNMMGPVDTSMRW-AKKGPTGIMMVG 117

Query: 119 VNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           + G GKTT  GKL++ +S+  G K +L A D +R AA+DQL+   +R       +E G  
Sbjct: 118 LQGSGKTTTTGKLARLLSERDGKKPLLVAADVYRPAAVDQLRTLGERLGMPVFHAE-GES 176

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +   A  +A     DV++ DTAGRL  +  LM  +  + R  K      P ++  VL
Sbjct: 177 PVVICKRAEARALEAGCDVILYDTAGRLTIDDQLMQELEDIDREAK------PANIFLVL 230

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQ+A+   + F+      G+I+TK+DG ARGG  + +      P+ +LG+GEG++ 
Sbjct: 231 DAMTGQDAVNTADNFNKRLDLDGVILTKLDGDARGGAALSVKEVTGKPIKYLGMGEGMDK 290

Query: 298 LEPFVAKDFSAVITGCLD 315
           LE F  +  ++ I G  D
Sbjct: 291 LEEFRPEGLASRILGMGD 308


>gi|163803443|ref|ZP_02197316.1| signal recognition particle protein [Vibrio sp. AND4]
 gi|159172744|gb|EDP57592.1| signal recognition particle protein [Vibrio sp. AND4]
          Length = 457

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 152/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D ++E L ++   L+ +D+ + V ++ V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRV--KEKA 59

Query: 77  KDVSVQRVLYDVSELIH------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             V V + L    E I       +++M  S       +  P VIL+ G+ G GKTT +GK
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQAELEVVMGESNEALDLAAQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK + +   K V++ + D +R AAI QL+  A     DF  S        +A  A   A
Sbjct: 120 LSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSSPDQKPLDIANAAIDHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A    
Sbjct: 180 KKKFFDVLIVDTAGRLAIDEEMMGEIKDLHSAIN------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFGDSLPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|302879899|ref|YP_003848463.1| signal recognition particle protein [Gallionella capsiferriformans
           ES-2]
 gi|302582688|gb|ADL56699.1| signal recognition particle protein [Gallionella capsiferriformans
           ES-2]
          Length = 450

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/206 (38%), Positives = 112/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+K + D    K++L + D +R AAI+QL+  A +   DF
Sbjct: 100 PAVILMAGLQGAGKTTTCGKLAKLLHDQHKKKILLVSCDIYRPAAIEQLRTLATQLGIDF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+I      +A  A   A+    DVLI+DTAGRL  +  +MA I ++   LK      
Sbjct: 160 FASDISQKPQDIALAALDFARKHHHDVLIVDTAGRLAIDEAMMAEIQQLHATLK------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA TGQ+A+     F      TG+++TKMDG +RGG  + +      P+ F+
Sbjct: 214 PIETLFVVDAMTGQDAVNTARAFGEALPLTGIVLTKMDGDSRGGAALSVRHVTGRPIKFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E  N LE F  +  ++ I G  D
Sbjct: 274 GVSEKPNGLEAFHPERMASRILGMGD 299


>gi|256026652|ref|ZP_05440486.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp.
           D11]
 gi|289764649|ref|ZP_06524027.1| signal recognition particle [Fusobacterium sp. D11]
 gi|289716204|gb|EFD80216.1| signal recognition particle [Fusobacterium sp. D11]
          Length = 444

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P +I++ G+ G GKTT   KL+K +     K++L   D +R AAI QL++   +   D
Sbjct: 98  RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E   D   +A  A ++A+      +I+DTAGRLH +  LM  + ++ + +K     
Sbjct: 158 VYSEENSKDVVGIATRAIEKAKEINATYMIVDTAGRLHVDETLMEELKELKKAIK----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +L V+DA  GQ+A+   E F+      G+I+TK+DG  RGG  + I      P+ F
Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE +ND+E F      + I G  D
Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298


>gi|308080100|ref|NP_001183903.1| hypothetical protein LOC100502496 [Zea mays]
 gi|238015356|gb|ACR38713.1| unknown [Zea mays]
          Length = 494

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +EL + ML P  KP       +P V++ VG+ G GKTT   K +      G K  L   D
Sbjct: 81  TELCN-MLDP-GKPSFTPKKGKPSVVMFVGLQGSGKTTTCSKYAYYHQKKGFKPALVCAD 138

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+ A DQLK  A +    F  S + SD   +A E  ++ + +  D++I+DT+GR    
Sbjct: 139 TFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQE 198

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           + L   + ++    K      P  V+ V+D++ GQ A  Q + F        +I+TKMDG
Sbjct: 199 AALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIITKMDG 252

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
            A+GGG +  V   K PV F+G GE I+D E F  K F + + G  D+
Sbjct: 253 HAKGGGALSAVAATKSPVIFIGTGEHIDDFEVFDVKPFVSRLLGMGDW 300


>gi|254304380|ref|ZP_04971738.1| IISP Type II signal recognition particle GTPase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324572|gb|EDK89822.1| IISP Type II signal recognition particle GTPase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 444

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P +I++ G+ G GKTT   KL+K +     K++L   D +R AAI QL++   +   D
Sbjct: 98  RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLEVLGQQIGVD 157

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E   D   +A  A ++A+      +I+DTAGRLH +  LM  + ++ + +K     
Sbjct: 158 VYSEEDNKDVVGIATRAIEKAKEINATYMIVDTAGRLHVDETLMEELKELKKAIK----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +L V+DA  GQ+A+   E F+      G+I+TK+DG  RGG  + I      P+ F
Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE +ND+E F      + I G  D
Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298


>gi|320333784|ref|YP_004170495.1| signal recognition particle protein [Deinococcus maricopensis DSM
           21211]
 gi|319755073|gb|ADV66830.1| signal recognition particle protein [Deinococcus maricopensis DSM
           21211]
          Length = 449

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 134/274 (48%), Gaps = 15/274 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS-ELIHKMLMPLSK 101
           E+   L+ +D+  +VA+  V  +  K   ++V     + Q V+  V+ ELI  +     +
Sbjct: 35  EIRMALLEADVNFSVAKDFVARVTEKAVGQEVMGSLNAGQMVVKIVNDELIETLGGQAKQ 94

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           P      +  ++  +VG+ G GKTT  GKL++     G +V+L A DT R AA DQLKI 
Sbjct: 95  P---TLKNEGNIFFMVGLQGAGKTTSTGKLAQYYKSKGRRVLLVAADTQRPAARDQLKIL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +     +    G   A    +     Q+   D++I+DTAGRL  +  LM  +  +   
Sbjct: 152 GQQVGVPVLEVANGETPAETKRKLEAHLQSDYRDLIIVDTAGRLQIDEALMDQLADLKGA 211

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           L      +P   L V+DA TGQ AL   E F +  G +GLI+TKMDG ARGG  +     
Sbjct: 212 L------SPTETLLVVDAMTGQEALNVAETFESRIGLSGLIITKMDGDARGGAALSARFV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+YF GV E ++ LEPF     +  I G  D
Sbjct: 266 TGKPIYFAGVSEKLSGLEPFYPDRVAGRILGMGD 299


>gi|320532006|ref|ZP_08032899.1| signal recognition particle protein [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320135770|gb|EFW27825.1| signal recognition particle protein [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 561

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 130/240 (54%), Gaps = 13/240 (5%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           Q+V+  V+E + ++L   ++  +W     P +I++ G+ G GKTT+ GKL + + D G +
Sbjct: 72  QQVVKIVNEELIEVLGGQTREIHW-ADRGPTIIMLAGLQGAGKTTLAGKLGRWLRDQGKR 130

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLI 198
           V+L A D  R  A+ QL + A+R        E G+   D  A+A    + A+    DV++
Sbjct: 131 VLLVASDLQRPNAVTQLSVVAERAGVHVWAPEPGNGVGDPVAVARSGVEHARTNGYDVVV 190

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL  ++ +M    + IR+    D  +PH +L VLDA  GQ+A+     F    G 
Sbjct: 191 VDTAGRLGVDAEMM---DQAIRIR---DAVSPHEILFVLDAMVGQDAVNTSVAFRDGVGF 244

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           TG++++K+DG ARGG  + +      PV F   GEG+ D E F A   ++ I   LD G+
Sbjct: 245 TGVVLSKLDGDARGGAALSVRGVTGAPVLFSSTGEGLTDFERFHADRMASRI---LDMGD 301


>gi|323466313|gb|ADX70000.1| Signal recognition protein Ffh [Lactobacillus helveticus H10]
          Length = 476

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  ++ +  +   K+V       Q+V+  V+E + KM+   + P N   
Sbjct: 39  LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEELTKMMGEEAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            H P +I++VG+ G GKTT +GKL+  +      + +L AGD +R AA+DQLK   ++  
Sbjct: 98  KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTQKARPLLIAGDIYRPAAVDQLKQIGEQLK 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D A +  +   +A   K D ++IDTAGRL  +  LM  + ++ +V +   
Sbjct: 158 VPVFSKDGEKDVAKIVQDGLAEADKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAQ--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P ++L V+DA TGQ A    + F      TG+I+TK+DG  RGG  + I      P+
Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G GE ++DL+ F     ++ I G  D
Sbjct: 272 LFTGQGEKLSDLDIFHPDRMASRILGMGD 300


>gi|282850847|ref|ZP_06260221.1| signal recognition particle protein [Lactobacillus gasseri 224-1]
 gi|282557799|gb|EFB63387.1| signal recognition particle protein [Lactobacillus gasseri 224-1]
          Length = 440

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 138/269 (51%), Gaps = 14/269 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  ++++  +   K+V       Q+++  V + + KM+   +   N   
Sbjct: 3   LLEADVNFKVVKDFIKKIKKEALGKEVQESLNPGQQIIKIVDDELTKMMGEEAVSLNKS- 61

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            H P +I++VG+ G GKTT +GKL+   M +   + +L AGD +R AAIDQLK    + +
Sbjct: 62  QHIPTIIMMVGLQGTGKTTTVGKLANYLMKNEKARPLLIAGDIYRPAAIDQLKQIGQQLN 121

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              V SE   D A +     ++A   K D ++IDTAGRL  +  LM  + ++  V     
Sbjct: 122 VP-VYSEDNQDVAEIVKHGLEEADKNKNDYVLIDTAGRLEIDEQLMDELKRVTAVAH--- 177

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P + L V+DA TGQ A +  E F+     TG+I+TK+DG  RGG  + I     +P+
Sbjct: 178 ---PDNTLLVVDAMTGQAATQVAEGFNNDLDLTGIILTKLDGDTRGGAALSIRAVTGLPI 234

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G GE + DL  F     ++ I G  D
Sbjct: 235 IFTGQGEKLTDLSTFHPDRMASRILGMGD 263


>gi|161507707|ref|YP_001577663.1| Signal recognition protein Ffh [Lactobacillus helveticus DPC 4571]
 gi|260101393|ref|ZP_05751630.1| signal recognition particle protein [Lactobacillus helveticus DSM
           20075]
 gi|160348696|gb|ABX27370.1| Signal recognition protein Ffh [Lactobacillus helveticus DPC 4571]
 gi|260084804|gb|EEW68924.1| signal recognition particle protein [Lactobacillus helveticus DSM
           20075]
 gi|328465660|gb|EGF36877.1| signal recognition particle protein [Lactobacillus helveticus MTCC
           5463]
          Length = 476

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  ++ +  +   K+V       Q+V+  V+E + KM+   + P N   
Sbjct: 39  LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEELTKMMGEEAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            H P +I++VG+ G GKTT +GKL+  +      + +L AGD +R AA+DQLK   ++  
Sbjct: 98  KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTQKARPLLIAGDIYRPAAVDQLKQIGEQLK 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D A +  +   +A   K D ++IDTAGRL  +  LM  + ++ +V +   
Sbjct: 158 VPVFSEDGEKDVAKIVQDGLAEADKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAQ--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P ++L V+DA TGQ A    + F      TG+I+TK+DG  RGG  + I      P+
Sbjct: 215 ---PDNILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G GE ++DL+ F     ++ I G  D
Sbjct: 272 LFTGQGEKLSDLDIFHPDRMASRILGMGD 300


>gi|317031653|ref|XP_001393946.2| signal recognition particle protein [Aspergillus niger CBS 513.88]
          Length = 533

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 145/301 (48%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVNDLTRSNNLDEKAFDDMIKEICAALLSADVNVRLVQSLRKSIKSSVNFASLPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  EL+  ++ P ++PF      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-SLVDPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ 
Sbjct: 125 YQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAAEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   F A
Sbjct: 185 EIIIVDTSGRHKQEEELFTEMTQIQTAV------TPDQTILVLDSTIGQAAEAQSSAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ +LG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIYLGTGEHLMDLERFEPKAFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|37680973|ref|NP_935582.1| signal recognition particle GTPase [Vibrio vulnificus YJ016]
 gi|37199723|dbj|BAC95553.1| signal recognition particle GTPase [Vibrio vulnificus YJ016]
          Length = 476

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 152/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ V  +  K  A
Sbjct: 20  FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVREFVARV--KEKA 77

Query: 77  KDVSVQRVLYDVSELIH------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             V V + L    E I       + +M  S       +  P VIL+ G+ G GKTT +GK
Sbjct: 78  VGVEVSKSLTPGQEFIKIVQGELEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGK 137

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK + +   K V++ + D +R AAI QL+  A     DF  S        +A  A   A
Sbjct: 138 LSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSADQKPIDIANAAIDHA 197

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVLI+DTAGRL  +  +M  I ++   +       P   L V+DA TGQ+A    
Sbjct: 198 KKKFFDVLIVDTAGRLAIDEAMMGEIQQLHSAIN------PVETLFVVDAMTGQDAANTA 251

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ 
Sbjct: 252 KAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASR 311

Query: 310 ITGCLD 315
           I G  D
Sbjct: 312 ILGMGD 317


>gi|158320496|ref|YP_001513003.1| signal recognition particle protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158140695|gb|ABW19007.1| signal recognition particle protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 448

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 7/234 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           Q+V+  V+E + +++       N+  S  P +I++VG+ G GKTT  GKL+  +   G +
Sbjct: 73  QQVIKIVNEELTELMGTSQSKINFS-SKPPTIIMLVGLQGAGKTTTTGKLAGMLKKQGKR 131

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            +L A D +R AAI QL++  ++                ++        +   DV++IDT
Sbjct: 132 PLLIACDIYRPAAIKQLQVVGEKVGVPVFTMGDKQSPVDISKAGIDHGMSHGNDVILIDT 191

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH +  LM  +  +   +K      PH +L V+D+ TGQ+A+   E F+   G  G+
Sbjct: 192 AGRLHVDEELMDELKDIKNDVK------PHEILLVVDSMTGQDAVNVAEHFNEKLGIDGV 245

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I+TK+DG  RGG  + +      P+ F G+GE ++DLEPF     ++ I G  D
Sbjct: 246 ILTKLDGDTRGGAALSVRAVTNKPIKFTGLGEKLDDLEPFYPDRMASRILGMGD 299


>gi|71738105|ref|YP_273611.1| signal recognition particle protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558658|gb|AAZ37869.1| signal recognition particle protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 501

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 155/311 (49%), Gaps = 19/311 (6%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELL 71
           K ++ F + + +L + +  +    +L+ D +++ L ++   L+ +D+ + V +  V  + 
Sbjct: 40  KGSRMFENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV- 98

Query: 72  TKRYAKDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKT 125
            K  A    V R L       +++   L  L    N D       P VIL+ G+ G GKT
Sbjct: 99  -KERAVGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLMLNVTPPAVILMAGLQGAGKT 157

Query: 126 TVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T  GKL++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  
Sbjct: 158 TTAGKLARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALA 217

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K+A+ K +DV+I+DTAGRLH +  +M  I  +    K      P   L V+DA TGQ+
Sbjct: 218 AIKEARLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQD 271

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A    + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF   
Sbjct: 272 AANTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPD 331

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 332 RIASRILGMGD 342


>gi|295425198|ref|ZP_06817901.1| signal recognition particle protein [Lactobacillus amylolyticus DSM
           11664]
 gi|295064974|gb|EFG55879.1| signal recognition particle protein [Lactobacillus amylolyticus DSM
           11664]
          Length = 476

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 19/307 (6%)

Query: 20  GFASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            F + S ++++ + ++     IS   ++   RE +   L+ +D+   V +  ++++  + 
Sbjct: 2   AFENLSERIQKALKNLTGKGKISEEDINKASRE-IRLALLEADVNFKVVKDFIKKIKKEA 60

Query: 75  YAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K+V       Q+V+  V+E + KM+   +   N    H P +I++VG+ G GKTT +G
Sbjct: 61  LGKEVQESLNPGQQVIKIVNEELTKMMGETAVGLNKS-KHIPTIIMMVGLQGTGKTTTVG 119

Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+  +      + +L AGD +R AA+DQLK   D+            D A +  +   +
Sbjct: 120 KLAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGDQLKVPVYSEADEKDVAKIVQDGLAE 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A   K D +IIDTAGRL  +  LM  + ++ +V +      P ++L V+DA TGQ A   
Sbjct: 180 ADKNKNDYVIIDTAGRLEIDEPLMEELERIKKVAQ------PDNILLVVDAMTGQAATDV 233

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG  RGG  + I      P+ + G GE + DLE F     ++
Sbjct: 234 AKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPIIYTGQGEKLTDLEDFHPDRMAS 293

Query: 309 VITGCLD 315
            I G  D
Sbjct: 294 RILGMGD 300


>gi|237739056|ref|ZP_04569537.1| signal recognition particle protein [Fusobacterium sp. 2_1_31]
 gi|229423656|gb|EEO38703.1| signal recognition particle protein [Fusobacterium sp. 2_1_31]
          Length = 444

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P +I++ G+ G GKTT   KL+K +     K++L   D +R AAI QL++   +   D
Sbjct: 98  RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E   D   +A  A ++A+      +I+DTAGRLH +  LM  + ++ + +K     
Sbjct: 158 VYSEEDNKDVVGIATRAIEKAKEINATYMIVDTAGRLHVDETLMNELKELKKAIK----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +L V+DA  GQ+A+   E F+      G+I+TK+DG  RGG  + I      P+ F
Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE +ND+E F      + I G  D
Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298


>gi|227536075|ref|ZP_03966124.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227243972|gb|EEI93987.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 445

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/212 (35%), Positives = 113/212 (53%), Gaps = 7/212 (3%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD 163
            D S  P VIL+ G+NG GKTT  GKL+  + D  G K +L AGD +R AAIDQL++   
Sbjct: 93  LDISKNPTVILIAGLNGAGKTTFSGKLANYLKDKKGKKPLLVAGDVYRPAAIDQLEVLGG 152

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +       +   +D  A+A    ++A+    +V+IIDTAGRL  +  LM  I  +    K
Sbjct: 153 QVGVPVFVNRESNDPIAIAQAGVEEAKRNGHNVVIIDTAGRLAIDEALMVEITAVKEATK 212

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I     
Sbjct: 213 ------PQEILFVVDSMTGQDAVNTAKAFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVN 266

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+G GE +  L+ F     ++ I G  D
Sbjct: 267 KPIKFIGTGEKMEALDVFYPDRMASRILGMGD 298


>gi|261419395|ref|YP_003253077.1| signal recognition particle protein [Geobacillus sp. Y412MC61]
 gi|261375852|gb|ACX78595.1| signal recognition particle protein [Geobacillus sp. Y412MC61]
          Length = 469

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 112/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTTGKLANLLRKRHNRKPLLVAADVYRPAAIKQLETLGKQLDMPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 ++   +A +A ++A+ +  D ++IDTAGRLH +  LM  + +M   +K      
Sbjct: 161 FSLGEHANPVEIAKQALERAKEEHYDYVLIDTAGRLHIDEALMDELKQMKEAVK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +  V+DA TGQ+A+   + FH   G TG+I+TK+DG  RGG  + I      P+ F 
Sbjct: 215 PDEIFLVVDAMTGQDAVNVAQSFHEQLGITGVILTKLDGDTRGGAALSIRAVTGAPIKFA 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+GE ++ LEPF  +  ++ I G  D
Sbjct: 275 GMGEKLDALEPFHPERMASRILGMGD 300


>gi|212636513|ref|YP_002313038.1| signal recognition particle protein [Shewanella piezotolerans WP3]
 gi|212557997|gb|ACJ30451.1| Signal recognition particle protein [Shewanella piezotolerans WP3]
          Length = 453

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 158/317 (49%), Gaps = 28/317 (8%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV 67
           +WI      F + + +L   + +I    RL ++ V+E L ++   L+ +D+ + V ++ V
Sbjct: 23  NWIM-----FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFV 77

Query: 68  EELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             +  +   ++VS      Q  +  V   +   +   ++  +   +  P VI++ G+ G 
Sbjct: 78  NSVKERAVGQEVSKSLSPGQAFIKIVQSELENAMGEANEALDLS-AQPPAVIMMAGLQGA 136

Query: 123 GKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           GKTT + KLSK + +   K V++ + D +R AAI QL+  A     +F  S++      +
Sbjct: 137 GKTTSVAKLSKFLREREKKSVLVVSADVYRPAAIKQLETLATEVEVEFFPSDVSQKPVDI 196

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLD 238
           A  A   A+ K +DV+I+DTAGRLH +  +M  I          D HA   P   L V+D
Sbjct: 197 ANAAIAHAKLKFIDVVIVDTAGRLHVDEAMMDEIK---------DLHATVNPVETLFVVD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQ+A    + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + L
Sbjct: 248 AMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRNITGKPIKFLGVGEKTDAL 307

Query: 299 EPFVAKDFSAVITGCLD 315
           E F     ++ I G  D
Sbjct: 308 EAFHPDRIASRILGMGD 324


>gi|262393308|ref|YP_003285162.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. Ex25]
 gi|269966295|ref|ZP_06180383.1| Signal recognition particle GTPase [Vibrio alginolyticus 40B]
 gi|262336902|gb|ACY50697.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. Ex25]
 gi|269829092|gb|EEZ83338.1| Signal recognition particle GTPase [Vibrio alginolyticus 40B]
          Length = 460

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 153/310 (49%), Gaps = 27/310 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D ++E L ++   L+ +D+ + V ++ V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRV--KEKA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P V+L+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQTELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A     DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245
           A+ K  DVLI+DTAGRL  +  +M  I          D HA   P   L V+DA TGQ+A
Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEEMMGEIK---------DLHAAINPVETLFVVDAMTGQDA 229

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
               + F      TG+++TK+DG ARGG  + +      P+ FLGVGE  + LEPF    
Sbjct: 230 ANTAKAFGDALPLTGVVLTKVDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEPFHPDR 289

Query: 306 FSAVITGCLD 315
            ++ I G  D
Sbjct: 290 VASRILGMGD 299


>gi|262164016|ref|ZP_06031755.1| signal recognition particle subunit Ffh SRP54 [Vibrio mimicus
           VM223]
 gi|262027544|gb|EEY46210.1| signal recognition particle subunit Ffh SRP54 [Vibrio mimicus
           VM223]
          Length = 453

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 144/288 (50%), Gaps = 20/288 (6%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           R  +D +++ L ++   L+ +D+ + V +  V  +  K  A  V V + L    E I  +
Sbjct: 13  RLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGAVGVEVSKSLTPGQEFIKIV 70

Query: 96  LMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAG 147
              L       ++  N   +  P VIL+ G+ G GKTT +GKLSK + +   K V++ + 
Sbjct: 71  RQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKLSKLLKERDKKKVLVVSA 129

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D +R AAI QL+  A+    DF  S        +A  A   A+ K  DVLI+DTAGRL  
Sbjct: 130 DVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAKKKFYDVLIVDTAGRLAI 189

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  +MA I  + + +       P   L V+DA TGQ+A    + F      TG+I+TK+D
Sbjct: 190 DEQMMAEIQALHKAI------TPVETLFVVDAMTGQDAANTAKAFGDALPLTGVILTKVD 243

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G ARGG  + +      P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 244 GDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGD 291


>gi|19704725|ref|NP_604287.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|296328503|ref|ZP_06871023.1| signal recognition particle protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|19715045|gb|AAL95586.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|296154409|gb|EFG95207.1| signal recognition particle protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 444

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P +I++ G+ G GKTT   KL+K +     K++L   D +R AAI QL++   +   D
Sbjct: 98  RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E   D   +A  A ++A+      +I+DTAGRLH +  LM  + ++ + +K     
Sbjct: 158 VYSEEDNKDVVGIATRAIEKAKEINATYMIVDTAGRLHVDETLMDELKELKKAIK----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +L V+DA  GQ+A+   E F+      G+I+TK+DG  RGG  + I      P+ F
Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE +ND+E F      + I G  D
Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298


>gi|15616997|ref|NP_240210.1| signal recognition particle protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11387174|sp|P57473|SRP54_BUCAI RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|25294407|pir||H84975 signal recognition particle protein [imported] - Buchnera sp.
           (strain APS)
 gi|10039062|dbj|BAB13096.1| signal recognition particle protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 451

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 165/306 (53%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  I++  RL ++ ++E   E+   L+ +D+ ++V +K +E +  K   
Sbjct: 2   FNNLTQRLSDSLKKILNKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSIG 61

Query: 77  KDVSVQRVLYDVSELI----HKMLMPL-SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130
            +++  + L    E I    H+++  +  K  + +FS   P VILVVG+ G GKTT + K
Sbjct: 62  HEIN--KSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIEPPAVILVVGLQGSGKTTSLAK 119

Query: 131 L-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L     +    K+++ + DT+R+AAI+QLKI +D+   DF  S+       +   A K A
Sbjct: 120 LGKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFESDKHHTPIEITKNAIKYA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL+IDTAGRLH +  +M  I ++  + K ++       L ++D+  GQ+A+   
Sbjct: 180 KLKLYDVLLIDTAGRLHIDKKMMNEIQQIQVISKAIE------TLLIVDSMMGQDAINMA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F+     +G+I+TK DG +R G  + +      P+ F+G GE I  LEPF  +  +  
Sbjct: 234 KIFNNDLLISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMND 299


>gi|150390508|ref|YP_001320557.1| signal recognition particle protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149950370|gb|ABR48898.1| signal recognition particle protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 447

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 140/270 (51%), Gaps = 16/270 (5%)

Query: 53  LIRSDIGVAVAQ---KIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +   KIV+E  T  + +      Q+V+  V+E + +++        +  
Sbjct: 39  LLEADVNFKVVKDFVKIVKERATGSEVFESLTPGQQVIKIVNEELTELMGTTQSKITFS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P VI++VG+ G GKTT  GKL+  +   G + +L AGD +R AAI QL++    +  
Sbjct: 98  SKPPTVIMLVGLQGAGKTTTSGKLAGYLKKQGKRPLLVAGDIYRPAAIKQLEVVG--SQV 155

Query: 168 DFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           D     +G   +   +A    +       DV++IDTAGRLH +  LM  +  +   +K  
Sbjct: 156 DVPVFTLGDQISPVDIAKAGVEHGIKHGNDVVLIDTAGRLHIDDTLMDELKDIKTTVK-- 213

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  +L V+D+ TGQ+A+   E F    G  G+I+TK+DG  RGG  + +    + P
Sbjct: 214 ----PQEILLVVDSMTGQDAVNVAEHFDTKLGVDGIILTKLDGDTRGGAALSVRAVTRKP 269

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G+GE +NDLEPF     ++ I G  D
Sbjct: 270 IKFVGLGEKLNDLEPFHPDRMASRILGMGD 299


>gi|262065932|ref|ZP_06025544.1| signal recognition particle protein [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380412|gb|EFE87930.1| signal recognition particle protein [Fusobacterium periodonticum
           ATCC 33693]
          Length = 444

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P +I++ G+ G GKTT   KL+K +     K++L   D +R AAI QL++   +   D
Sbjct: 98  RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E   D   +A  A ++A+      +I+DTAGRLH +  LM  + ++ + +K     
Sbjct: 158 VYSEEDNKDVVGIATRAIEKAKEINATYMIVDTAGRLHIDETLMNELKELKKAIK----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +L V+DA  GQ+A+   E F+      G+I+TK+DG  RGG  + I      P+ F
Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE +ND+E F      + I G  D
Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298


>gi|198284558|ref|YP_002220879.1| signal recognition particle protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665204|ref|YP_002427226.1| signal recognition particle protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|7769071|gb|AAF69242.1|AF173880_5 signal recognition particle protein-like protein [Acidithiobacillus
           ferrooxidans]
 gi|198249079|gb|ACH84672.1| signal recognition particle protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517417|gb|ACK78003.1| signal recognition particle protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 458

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 156/308 (50%), Gaps = 22/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72
           F + + KL +   ++    RL +D +R+ L D+   L+ +D+ + V +  +    E  + 
Sbjct: 2   FDNLTQKLTQTFKNLRGQGRLSEDNIRDALRDVRLALLEADVALPVVKDFINNVRESAMG 61

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHRPH-VILVVGVNGVGKTTVIG 129
           +   K ++  +V     +++H  L+ L    N   D S RP  VIL+ G+ G GKTT   
Sbjct: 62  EAVVKSLTPGQVFV---KIVHDELVQLMGAHNDSLDLSARPPAVILLAGLQGSGKTTTSA 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+  + D   K V++ + D +R AA++QL         D   S  G     +A +A + 
Sbjct: 119 KLALWLKDKEKKRVLMVSTDVYRPAAMEQLVHLGKDIEVDVFPSSPGQQPVRIAQDAVEA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           AQ    DVLI+DTAGRLH +  +MA    +   +K      P  +L V+DA TGQ+A+  
Sbjct: 179 AQRGVYDVLIVDTAGRLHVDGEMMAEAQALTAAVK------PVELLFVVDAMTGQDAVNT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDFS 307
            + F+     TG+I+TK DG ARGG  + +      P+ F+G+GE I   LEPF  +  +
Sbjct: 233 AKAFNDALPLTGVILTKADGDARGGAALSVRAITGKPIKFIGIGEKIRKGLEPFYPERMA 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|331009220|gb|EGH89276.1| signal recognition particle protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 458

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L+ D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH +  +M  I  +    K      P   L V+DA TGQ+A    
Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|320155362|ref|YP_004187741.1| signal recognition particle, subunit Ffh SRP54 [Vibrio vulnificus
           MO6-24/O]
 gi|326423856|ref|NP_760505.2| signal recognition particle protein [Vibrio vulnificus CMCP6]
 gi|319930674|gb|ADV85538.1| signal recognition particle, subunit Ffh SRP54 [Vibrio vulnificus
           MO6-24/O]
 gi|319999228|gb|AAO10032.2| signal recognition particle protein [Vibrio vulnificus CMCP6]
          Length = 458

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 152/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V ++ V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVREFVARV--KEKA 59

Query: 77  KDVSVQRVLYDVSELIH------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             V V + L    E I       + +M  S       +  P VIL+ G+ G GKTT +GK
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQGELEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK + +   K V++ + D +R AAI QL+  A     DF  S        +A  A   A
Sbjct: 120 LSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSADQKPIDIANAAIDHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVLI+DTAGRL  +  +M  I ++   +       P   L V+DA TGQ+A    
Sbjct: 180 KKKFFDVLIVDTAGRLAIDEAMMGEIQQLHSAIN------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|302872185|ref|YP_003840821.1| signal recognition particle protein [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575044|gb|ADL42835.1| signal recognition particle protein [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 443

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 154/307 (50%), Gaps = 22/307 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F+S S KL++    +    +L +  ++E ++++   L+ +D+   V +  +  +  K   
Sbjct: 2   FSSLSEKLQDVFKKLRGKGKLTEKDIKEAMKEVKLALLEADVNYKVVKDFINTVTQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVI 128
           ++V       Q+V+    ++++  ++ L    +   +  P    + ++VG+ G GKTT  
Sbjct: 62  EEVLESLTPAQQVI----KIVYDEMVNLLGGSDTKLTFSPSGFSIYMMVGLQGSGKTTTA 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  +   G    L A D +R AAI QL++ A +            DA  +A +  + 
Sbjct: 118 GKLAGLLKKQGKNPSLVACDIYRPAAIKQLEVVAQKVGVKCYADYTSQDAVKIAKDGIEF 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A++ + DV+IIDTAGRLH N  LM  +  +   +K      P  +L V+DA TGQ+A+  
Sbjct: 178 AKSNRSDVVIIDTAGRLHINQELMDELKNIKNAVK------PTEILLVVDAMTGQDAVNV 231

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F+   G  G+IMTK+DG  RGG  + +      P+ F GVGE + DLE F     ++
Sbjct: 232 AEAFNDQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVGEKMEDLEVFHPDRMAS 291

Query: 309 VITGCLD 315
            I G  D
Sbjct: 292 RILGMGD 298


>gi|298488273|ref|ZP_07006306.1| signal recognition particle [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298157212|gb|EFH98299.1| signal recognition particle [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330985047|gb|EGH83150.1| signal recognition particle protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 458

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH +  +M  I  +    K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|323141933|ref|ZP_08076793.1| signal recognition particle protein [Phascolarctobacterium sp. YIT
           12067]
 gi|322413600|gb|EFY04459.1| signal recognition particle protein [Phascolarctobacterium sp. YIT
           12067]
          Length = 448

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 113/205 (55%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VI++VG+ G GKTT  GKL+  +     K +L AGD +R AAI QL++  ++ +    
Sbjct: 101 PTVIMLVGLQGAGKTTTAGKLANYLKRKHKKPLLVAGDVYRPAAITQLQVLGEQLNVPVF 160

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                     +A +A ++A +   D +IIDTAGRLH N  LM    + +R +K      P
Sbjct: 161 TLGDKVSPVEIAQKAMEKAHSLACDTVIIDTAGRLHINEELM----EELRNIK--GAVHP 214

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+DA TGQ+A+   E F    G  GLI+TK+DG ARGG ++ +      PV  +G
Sbjct: 215 QEILLVVDAMTGQDAVTVAESFDKELGIDGLIVTKLDGDARGGAVLSVKAVTGKPVKLIG 274

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           +GE ++ LEPF     ++ I G  D
Sbjct: 275 LGEKLDALEPFHPDRMASRILGMGD 299


>gi|154249332|ref|YP_001410157.1| signal recognition particle protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153268|gb|ABS60500.1| signal recognition particle protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 434

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 155/308 (50%), Gaps = 28/308 (9%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE------- 68
           KL+  F   S K K      I+ R +++ + + ++  L+ +D+   V ++ VE       
Sbjct: 8   KLSNAFKVLSGKGK------ITERNIEEAI-QIVKTALLAADVNYKVVKEFVENVKKRAL 60

Query: 69  -ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            E + K    D    +++ D  ELI   L+   +PF     HRP  I++VG+ G GKTT 
Sbjct: 61  GEEVLKSLTPDQMFVKIIRD--ELIK--LLGEREPFK--LIHRPAYIMMVGLQGTGKTTS 114

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             K++  +   G   +L A DT+R AAIDQL+    +     +  +   +A  +  EA K
Sbjct: 115 AAKIANYLKKQGKNPILVAADTYRPAAIDQLETLGKKIGVPVITGD-RKNALKIVEEAKK 173

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           Q +    DV+I+DTAGRLH +  +M  + ++  ++       P  +L  +DA  GQ+A+ 
Sbjct: 174 QVKDSGHDVVILDTAGRLHIDDEMMQELEQIKEMVN------PDEILLTVDAMAGQDAVN 227

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG ++TK+DG +RGG ++ I      PV F+GVGE I+D + F     +
Sbjct: 228 SGKTFNDRLNVTGFVITKLDGDSRGGVILTIRYITGKPVKFVGVGEKIDDFDEFYPDRIA 287

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 288 SRILGLGD 295


>gi|21672654|ref|NP_660721.1| signal recognition particle protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091302|sp|Q8K9F7|SRP54_BUCAP RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|21623290|gb|AAM67932.1| signal recognition particle protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 450

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 158/294 (53%), Gaps = 23/294 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-----DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + + +L + +  II+  RL      D +RE +   L+ +D+ ++V +K ++ +  K  
Sbjct: 2   FNNLTERLSQSLRKIINKGRLTEENIKDTIRE-VRKALLEADVTLSVIKKFIQNVSKKAI 60

Query: 76  AKDVSVQRVLYDVSELI----HKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
             +++  + L    E I    +++++ + +  N D +     P +ILVVG+ GVGKTT +
Sbjct: 61  GHEIN--KSLTPGQEFIKIVKNELILSMGEK-NHDLNLSIQPPAIILVVGLQGVGKTTTL 117

Query: 129 GKLSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            KL+K + +   K +L  + D +R+AAI QL+I +D+   DF  S+       +  EA +
Sbjct: 118 VKLAKWIKEKYKKKILTVSTDIYRAAAIKQLQILSDQVKIDFYLSDTTQTPINITKEAIE 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K  D+L+IDTAGRLH N+ +M  I  +  + K      P   L ++D+  GQ+A+ 
Sbjct: 178 HAKLKLYDLLLIDTAGRLHINTEMMNEINTIQNISK------PIETLLIVDSMMGQDAIN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             + F A    +G+++TK D  AR G  + I      P+ F+G GE ++ LEPF
Sbjct: 232 IAKKFSASLSISGIVITKTDSDARSGVALSIRHITGKPIKFIGTGEKLHQLEPF 285


>gi|255067740|ref|ZP_05319595.1| signal recognition particle protein [Neisseria sicca ATCC 29256]
 gi|255047951|gb|EET43415.1| signal recognition particle protein [Neisseria sicca ATCC 29256]
          Length = 456

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 151/286 (52%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKML 96
           +D ++E L ++   L+ +D+ + V ++ V  +  K   ++V V  +  D +   ++++ L
Sbjct: 24  EDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEV-VGSLTPDQAFIGVVNQAL 82

Query: 97  MPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
           + L    N      +  P V+L+ G+ G GKTT +GKL++ + ++   KV++ + D +R 
Sbjct: 83  IELMGKENSSLDLAAVPPAVVLMAGLQGAGKTTTVGKLARLLKNEQKKKVLVVSADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +  +M
Sbjct: 143 AAIEQLRLLAEQVGIDFFPSDSNQKPVEIATAAIDYAKKHFYDVLMVDTAGRLAIDEEMM 202

Query: 213 AGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             I  +         HA   P   L V+DA  GQ+A+   + F+     TG+I+TKMDG 
Sbjct: 203 NEIKAL---------HAAVNPVETLFVVDAMLGQDAVNTAQAFNEALPLTGVILTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+G+GE I  LEPF     ++ I G  D
Sbjct: 254 SRGGAALSVRHVTGKPIKFIGIGEKITGLEPFYPDRIASRILGMGD 299


>gi|330807704|ref|YP_004352166.1| Signal recognition particle protein (From sprot) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375812|gb|AEA67162.1| Signal recognition particle protein (From sprot) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 458

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 155/309 (50%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D +     P V+L+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVVLMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S++      +A  A K+A
Sbjct: 120 LARFLKERKKKSVMVVSADIYRPAAIKQLETLANDIGVTFFPSDLSQKPVDIAQAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K +DV+I+DTAGRLH +  +M  I  +         HA   P   L V+DA TGQ+A 
Sbjct: 180 KLKFIDVVIVDTAGRLHIDEEMMGEIKAL---------HAAINPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF  +  
Sbjct: 231 NTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPERI 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|289625897|ref|ZP_06458851.1| signal recognition particle protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646205|ref|ZP_06477548.1| signal recognition particle protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867523|gb|EGH02232.1| signal recognition particle protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 458

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L+ D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH +  +M  I  +    K      P   L V+DA TGQ+A    
Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|91228772|ref|ZP_01262682.1| signal recognition particle protein [Vibrio alginolyticus 12G01]
 gi|91187679|gb|EAS74001.1| signal recognition particle protein [Vibrio alginolyticus 12G01]
          Length = 460

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 153/310 (49%), Gaps = 27/310 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D ++E L ++   L+ +D+ + V ++ V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRV--KEKA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P V+L+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQTELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A     DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245
           A+ K  DVLI+DTAGRL  +  +M  I          D HA   P   L V+DA TGQ+A
Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEEMMGEIK---------DLHAAINPVETLFVVDAMTGQDA 229

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
               + F      TG+++TK+DG ARGG  + +      P+ FLGVGE  + LEPF    
Sbjct: 230 ANTAKAFGDALPLTGVVLTKVDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEPFHPDR 289

Query: 306 FSAVITGCLD 315
            ++ I G  D
Sbjct: 290 VASRILGMGD 299


>gi|291618577|ref|YP_003521319.1| Ffh [Pantoea ananatis LMG 20103]
 gi|291153607|gb|ADD78191.1| Ffh [Pantoea ananatis LMG 20103]
 gi|327394957|dbj|BAK12379.1| signal recognition particle protein Ffh [Pantoea ananatis AJ13355]
          Length = 453

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 159/309 (51%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  +  +      
Sbjct: 2   FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKESAVG 61

Query: 77  KDVSVQRVLYDVSELI----HKMLMPLSKPFN-WDFSHRPH-VILVVGVNGVGKTTVIGK 130
            DV+  + L    E I    ++++  +    N  D + +P  V+L+ G+ G GKTT +GK
Sbjct: 62  HDVN--KSLTPGQEFIKIVRNELVTAMGAENNALDLAAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A +   DF  S++      +   A ++A
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSDLSQKPVDIVNNALREA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A 
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQV---------HAAINPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+I+TK+DG ARGG  + I      P+ F+G+GE  + LE F     
Sbjct: 231 NTAKAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGMGEKTDALEAFYPDRI 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|295698285|ref|YP_003602940.1| Ffh protein [Candidatus Riesia pediculicola USDA]
 gi|291157088|gb|ADD79533.1| Ffh protein [Candidatus Riesia pediculicola USDA]
          Length = 444

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 150/280 (53%), Gaps = 24/280 (8%)

Query: 47  EELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--S 100
           ++++ LLI SD+ V V +KI++    E+L  +  +         D  E++ K L+ +   
Sbjct: 32  DKIKTLLIDSDVSVMVVKKILQKIEKEILKSKIEESFDPSG---DFIEIVRKTLLQIIGE 88

Query: 101 KPFN-WDFSHRPH-VILVVGVNGVGKTTV---IGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           K FN +DFS R H +IL+VG  G GKTT    IG++ +K  +   KV+LA+ DT R AA 
Sbjct: 89  KEFNLFDFSKRNHLIILLVGSKGSGKTTTASKIGRVLRKKYNK--KVLLASTDTGRPAAF 146

Query: 156 DQLKIWADRTSADF--VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           DQLK  ++ +  DF  V S+    +  LA  +  + ++++ D LI+DT G +H +   + 
Sbjct: 147 DQLKQLSEYSKVDFFEVNSKKSRSSFDLAKFSIARFKSERYDTLIVDTEGCMHTDLEKLD 206

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            I K+ +++       P     V+D+  GQ+A+     F+      G+I+TKMDG +RGG
Sbjct: 207 EIQKIHKIV------NPSDTFFVIDSMVGQDAIHSSRTFNKKFPLDGIILTKMDGDSRGG 260

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             + +      P+ FLG GE I+ +EPF  K   + I G 
Sbjct: 261 CALSVKEVTGKPIAFLGTGEHISLIEPFHPKKIISKILGT 300


>gi|262375650|ref|ZP_06068882.1| signal recognition particle protein [Acinetobacter lwoffii SH145]
 gi|262309253|gb|EEY90384.1| signal recognition particle protein [Acinetobacter lwoffii SH145]
          Length = 468

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 158/310 (50%), Gaps = 27/310 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + + +L + + ++  S +L +D +++ L ++   L+ +D+ + V +    K+ EE L 
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHRPHVI-LVVGVNGVGKTTVIG 129
           +     +S  +      +++H  L  +    N   D + +P V+ L+ G+ G GKTT   
Sbjct: 62  QEVMTQLSPGQAFV---KIVHDELTKMMGEANESLDLAAKPPVVVLLAGLQGAGKTTTAA 118

Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL++ + +    KV + + D +R AAI QL+  A    A F+ S        +   A +Q
Sbjct: 119 KLARFLQERQKKKVAMVSADVYRPAAIKQLQTVAGEVGAIFLESSADEKPITIVNRAIEQ 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245
           A+ +  DVLI+DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A
Sbjct: 179 AKIQFADVLIVDTAGRLHIDDDMMGEIKEL---------HAAINPTETLFVVDAMTGQDA 229

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
               + F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF  + 
Sbjct: 230 ANTAKAFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPER 289

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 290 VAQRILGMGD 299


>gi|257457830|ref|ZP_05622989.1| signal recognition particle-docking protein FtsY [Treponema
           vincentii ATCC 35580]
 gi|257444543|gb|EEV19627.1| signal recognition particle-docking protein FtsY [Treponema
           vincentii ATCC 35580]
          Length = 293

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 143/269 (53%), Gaps = 5/269 (1%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           +LDD   E + D L+  DIG   A +I ++L ++   + +  Q     V ++++ +L+P 
Sbjct: 19  KLDDSFFESVTDTLVEGDIGAQFAFEIEDQLRSECKKRKIEQQE---QVLQVLYDILLPF 75

Query: 100 SKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQ 157
               ++     +  V L++GVNGVGKTT   KL++   S     ++LAA DTFR+AAI+Q
Sbjct: 76  LPVASFMPEKDKTSVYLLLGVNGVGKTTTAAKLAQYFKSRFEAPIILAAADTFRAAAIEQ 135

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+    +     +  + G D  A+ ++A +  + +   ++I DTAGRLHN   L+  + K
Sbjct: 136 LEYHGKQLDVRVIAHQYGGDPGAVIFDAAQAVRVQGGGLVIADTAGRLHNKENLVRELQK 195

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + R+ +       +  + VLD T GQ+  RQ E+FH   G   +I+TK D TA+GG  + 
Sbjct: 196 INRIAESKTDEGCYKKILVLDVTAGQSGFRQAEVFHEAVGVDAVILTKYDSTAKGGIALS 255

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +     +PV F G GE   D  PF A  +
Sbjct: 256 VGRQLNLPVIFTGTGEKYGDFAPFNADTY 284


>gi|28868679|ref|NP_791298.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213969055|ref|ZP_03397194.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tomato T1]
 gi|301384050|ref|ZP_07232468.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058756|ref|ZP_07250297.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tomato K40]
 gi|302131717|ref|ZP_07257707.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28851918|gb|AAO54993.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213926053|gb|EEB59609.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tomato T1]
          Length = 458

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH +  +M  I  +    K      P   L V+DA TGQ+A    
Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|289207611|ref|YP_003459677.1| signal recognition particle protein [Thioalkalivibrio sp. K90mix]
 gi|288943242|gb|ADC70941.1| signal recognition particle protein [Thioalkalivibrio sp. K90mix]
          Length = 462

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 158/307 (51%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E +  +    RL +D +++ L ++   L+ +D+ + V ++ V+++  K   
Sbjct: 2   FDGLSSRLQETMKRLKGQARLTEDNIQDALREVRMALLEADVALPVVREFVKDVKEKALG 61

Query: 77  KDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIG 129
           ++V    +  + L  V   +H  L+      N   +     P V+LV G+ G GKTT IG
Sbjct: 62  QEVIGSLTPGQALIKV---VHDELVATMGGENAALNLAVQPPAVVLVAGLQGAGKTTSIG 118

Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL++ + +    KV + + D +R AAI QL+  A +    F  S+      A+A EA  +
Sbjct: 119 KLARLLREREKKKVAVVSCDVYRPAAIQQLETLAGQVEVTFYPSDTSQKPEAIASEAVAR 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    +VL++DTAGRLH +  +MA +  + + +       P   L V+D+ TGQ+A   
Sbjct: 179 ARRDGTEVLLVDTAGRLHVDEDMMAEVKALHQAID------PIETLFVVDSMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F      TG+++TK DG ARGG  + +     +P+ F+G+GE  + LEPF  +  ++
Sbjct: 233 ARAFGEALPLTGVVLTKADGDARGGAALSVRQITGVPIKFIGMGERPDALEPFHPERIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGKGD 299


>gi|153823565|ref|ZP_01976232.1| signal recognition particle protein [Vibrio cholerae B33]
 gi|126518919|gb|EAZ76142.1| signal recognition particle protein [Vibrio cholerae B33]
          Length = 434

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A+    DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAADT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|21673993|ref|NP_662058.1| signal recognition particle protein [Chlorobium tepidum TLS]
 gi|21647139|gb|AAM72400.1| signal recognition particle protein [Chlorobium tepidum TLS]
          Length = 449

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 138/268 (51%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   VA+K+VE++  K   + V       Q ++  V++ + +++   ++P N   
Sbjct: 38  LLSADVNYKVAKKLVEDIREKSLGESVIKSVSPAQMIVKIVNDELTEIMGGQNQPLNLPP 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
              P +++V G+ G GKTT   KL+K++   G   +L A D +R AA++QLK   ++   
Sbjct: 98  KKIPAIVMVAGLQGSGKTTFCAKLAKRLKKNGKNPILVAADVYRPAAVEQLKTLGEQIDV 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                E   DA   A    + A+A   DV+I+DTAGRL  +  +MA    +   L     
Sbjct: 158 PVFSIE-EQDAMKAALGGLEAAKAGAKDVVIVDTAGRLQIDEAMMAEAEALKNRL----- 211

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            +P  +L V+D+  GQ A+   + F+      G+++TK+DG ARGG  + I    + P+ 
Sbjct: 212 -SPDELLFVVDSMMGQEAVNTAKAFNDRLDFDGVVLTKLDGDARGGAALSIRQVVEKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+ VGE ++DL+ F     +  I G  D
Sbjct: 271 FMSVGEKVDDLDVFYPDRMAQRILGMGD 298


>gi|116073373|ref|ZP_01470635.1| signal recognition particle protein [Synechococcus sp. RS9916]
 gi|116068678|gb|EAU74430.1| signal recognition particle protein [Synechococcus sp. RS9916]
          Length = 499

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 143/280 (51%), Gaps = 16/280 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100
           DG  +E+   L+ +D+ + V +  V E+  K    +V V+ V  D    +++H+ L+ + 
Sbjct: 28  DGALKEVRRALLEADVSLPVVKDFVAEVREKAVGAEV-VRGVSPDQKFIQVVHEQLVEVM 86

Query: 101 KPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              N   +     P V+L+ G+ G GKTT   KL   + D G + ++   D +R AAI+Q
Sbjct: 87  GGGNAPLAKADQAPTVVLMAGLQGAGKTTATAKLGLHLKDQGRRALMVGADVYRPAAIEQ 146

Query: 158 LKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           L+   ++   D     +G++A    +A     +A+ +  D L++DTAGRL  ++ +M   
Sbjct: 147 LRTLGEQI--DVEVFSLGAEAKPEDIAAAGLAKAKEEGFDTLLVDTAGRLQIDTSMME-- 202

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +M+R+   + P     VL V+D+  GQ A      FH   G TG ++TK+DG +RGG  
Sbjct: 203 -EMVRIRTAVQPD---EVLLVVDSMIGQEAAELTRAFHEQVGITGAVLTKLDGDSRGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 259 LSIRKVSGQPIKFMGTGEKVEALQPFHPERMASRILGMGD 298


>gi|227890253|ref|ZP_04008058.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus johnsonii
           ATCC 33200]
 gi|268319235|ref|YP_003292891.1| signal recognition particle protein [Lactobacillus johnsonii
           FI9785]
 gi|227849067|gb|EEJ59153.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus johnsonii
           ATCC 33200]
 gi|262397610|emb|CAX66624.1| signal recognition particle protein [Lactobacillus johnsonii
           FI9785]
          Length = 476

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 20/306 (6%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + S +L++ + ++     IS   ++D  RE +   L+ +D+   V +  ++++  +  
Sbjct: 3   FENLSERLQKALKNLTGKGKISEADINDASRE-IRLALLEADVNFKVVKDFIKKIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V + + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQDSLNPGQQIIKIVDDELTKMMGEEAVSLNKS-PHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+   M +   + +L AGD +R AA++QLK    +     V SE   D A +     ++A
Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAMEQLKQIGQQLDVP-VYSEDNQDVAEIVKHGLEEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM  + ++  V        P + L V+DA TGQ A +  
Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDELKRVTEVAH------PDNTLLVVDAMTGQAATQVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I     +P+ F G GE + DL  F     ++ 
Sbjct: 234 EGFNNDLDLTGIVLTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|319938302|ref|ZP_08012699.1| signal recognition particle GTPase [Coprobacillus sp. 29_1]
 gi|319806595|gb|EFW03253.1| signal recognition particle GTPase [Coprobacillus sp. 29_1]
          Length = 457

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 161/312 (51%), Gaps = 30/312 (9%)

Query: 20  GFASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            F S S +L++ +  I     ++   +D+ +RE +   L+ +D+   V ++ +     K 
Sbjct: 2   AFESLSERLQDSLKKIKGQATLTEANMDEMLRE-IRLALLEADVNFQVVKEFIANTKEKA 60

Query: 75  YAKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
             +DV         V +V++D  EL+  +   +S+    DFS +P VI++VG+ G GKTT
Sbjct: 61  LGQDVLGSLKPGQVVVKVVHD--ELVELLGTSVSE---LDFSRKPTVIMMVGLQGSGKTT 115

Query: 127 VIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183
             GK++K ++     K +L A D +R AA+DQLK    + +      E G+D +A  +  
Sbjct: 116 TSGKIAKLITKKYAKKPLLVAADIYRPAAVDQLKTLGQQLNVPVF--EKGTDISAEDIVK 173

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A    Q  + DV+I+DTAGRLH +  LM  +  +  +        P  +L V+DA TGQ
Sbjct: 174 QAMAYGQENQHDVIIVDTAGRLHIDEPLMQELQNIKEITN------PSEILLVVDALTGQ 227

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           + +   + F+     TG ++TK+DG +RGGG + +     +P+ F+G GE ++ ++ F  
Sbjct: 228 DIVNVAQSFNEHLSITGAVLTKLDGDSRGGGALSVRHITHVPIKFVGTGEKLDAIDLFYP 287

Query: 304 KDFSAVITGCLD 315
              +  I G  D
Sbjct: 288 DRMADRILGMGD 299


>gi|303327980|ref|ZP_07358419.1| signal recognition particle protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861806|gb|EFL84741.1| signal recognition particle protein [Desulfovibrio sp. 3_1_syn3]
          Length = 506

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 136/268 (50%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEEL----LTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  VE +    L +   K VS  Q+V+  V + +  +L   +   N   
Sbjct: 38  LLEADVNFKVVKDFVESVREKCLGQETLKGVSPAQQVVKIVHDELVSLLGGETTGLNLQ- 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
              P VI++VG+ G GKTT  GK++  +    ++  L   D +R AAIDQL + A +   
Sbjct: 97  GREPAVIMLVGLQGSGKTTSAGKIANLLRRQKMRPYLVPADVYRPAAIDQLTVLAKQLDM 156

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               S        +A  A  QA+ ++  VL++DTAGRLH +  LM  +  +   ++    
Sbjct: 157 PCFPSTTEMKPVDIATAALAQAREEQATVLLLDTAGRLHVDEPLMEELSAIKAAVQ---- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V DA TGQ+A+   E F+   G TG+++TKMDG ARGG  + I      PV 
Sbjct: 213 --PQEILFVADAMTGQDAVTVAEAFNERLGLTGVVLTKMDGDARGGAALSIRSVTGAPVK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+GVGE ++++E F     +  I G  D
Sbjct: 271 FVGVGEKLSEMEVFHPDRIAGRILGMGD 298


>gi|3334345|sp|Q00179|SRP54_ASPNG RecName: Full=Signal recognition particle 54 kDa protein homolog
 gi|598061|gb|AAB04946.1| srpA [Aspergillus niger]
 gi|134078502|emb|CAK40424.1| signal recognition particle 54K protein homolog srpA-Aspergillus
           niger
 gi|1586559|prf||2204256A srpA gene
          Length = 534

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 145/302 (48%), Gaps = 23/302 (7%)

Query: 27  KLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTK 73
           ++   + D+  S  LD     D + +E+   L+ +D+ V + Q + + +        L  
Sbjct: 9   RINAAVNDLTRSNNLDEKQAFDDMIKEICAALLSADVNVRLVQSLRKSIKSSVNFASLPP 68

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              K   +Q+ ++D  EL+  ++ P ++PF      R +VI+ VG+ G GKTT   KL++
Sbjct: 69  AVNKKRLIQKAVFD--ELV-SLVDPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKLAR 124

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++
Sbjct: 125 HYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAAEGVAKFKKER 184

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            +++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   F 
Sbjct: 185 FEIIIVDTSGRHKQEEELFTEMTQIQTAV------TPDQTILVLDSTIGQAAEAQSSAFK 238

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           A A    +I+TK DG A GGG I  V     P+ +LG GE + DLE F  K F   + G 
Sbjct: 239 ATADFGAIIITKTDGHAAGGGAISAVAATHTPIIYLGTGEHLMDLERFEPKAFIQKLLGM 298

Query: 314 LD 315
            D
Sbjct: 299 GD 300


>gi|237745294|ref|ZP_04575775.1| signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp.
           7_1]
 gi|229432523|gb|EEO42735.1| signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp.
           7_1]
          Length = 444

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P +I++ G+ G GKTT   KL+K +     K++L   D +R AAI QL++   +   D
Sbjct: 98  RNPTIIMLAGLQGAGKTTFAAKLAKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVD 157

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E   D   +A  A ++A+      +I+DTAGRLH + ILM  + ++ + +K     
Sbjct: 158 VYSEENSKDVVGIATRAIEKAKEINATYMIVDTAGRLHVDEILMEELKELKKAIK----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +L V+DA  GQ+A+   E F+      G+I+TK+DG   GG  + I      P+ F
Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNALSVDGVILTKLDGDTHGGAALSIKAVVGKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE +ND+E F      + I G  D
Sbjct: 272 IGVGEKLNDIEIFHPDRLVSRILGMGD 298


>gi|15640582|ref|NP_230211.1| signal recognition particle protein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|229509156|ref|ZP_04398641.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae B33]
 gi|229519634|ref|ZP_04409077.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae RC9]
 gi|229606151|ref|YP_002876799.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           MJ-1236]
 gi|254850797|ref|ZP_05240147.1| signal recognition particle protein [Vibrio cholerae MO10]
 gi|255744215|ref|ZP_05418168.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholera CIRS
           101]
 gi|262147229|ref|ZP_06028031.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           INDRE 91/1]
 gi|9654990|gb|AAF93728.1| signal recognition particle protein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|229344323|gb|EEO09298.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae RC9]
 gi|229353728|gb|EEO18664.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae B33]
 gi|229368806|gb|ACQ59229.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           MJ-1236]
 gi|254846502|gb|EET24916.1| signal recognition particle protein [Vibrio cholerae MO10]
 gi|255738155|gb|EET93547.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholera CIRS
           101]
 gi|262031326|gb|EEY49938.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           INDRE 91/1]
          Length = 461

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A+    DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAADT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|28899308|ref|NP_798913.1| signal recognition particle protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838719|ref|ZP_01991386.1| signal recognition particle protein [Vibrio parahaemolyticus
           AQ3810]
 gi|156975746|ref|YP_001446653.1| hypothetical protein VIBHAR_03481 [Vibrio harveyi ATCC BAA-1116]
 gi|260879000|ref|ZP_05891355.1| signal recognition particle protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260897214|ref|ZP_05905710.1| signal recognition particle protein [Vibrio parahaemolyticus
           Peru-466]
 gi|260900219|ref|ZP_05908614.1| signal recognition particle protein [Vibrio parahaemolyticus
           AQ4037]
 gi|28807532|dbj|BAC60797.1| signal recognition particle protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747879|gb|EDM58757.1| signal recognition particle protein [Vibrio parahaemolyticus
           AQ3810]
 gi|156527340|gb|ABU72426.1| hypothetical protein VIBHAR_03481 [Vibrio harveyi ATCC BAA-1116]
 gi|308088451|gb|EFO38146.1| signal recognition particle protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308089612|gb|EFO39307.1| signal recognition particle protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308110287|gb|EFO47827.1| signal recognition particle protein [Vibrio parahaemolyticus
           AQ4037]
 gi|328474159|gb|EGF44964.1| signal recognition particle protein [Vibrio parahaemolyticus 10329]
          Length = 460

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 152/307 (49%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D ++E L ++   L+ +D+ + V ++ V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRV--KEKA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P V+L+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQAELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A     DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPLDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEEMMGEIKDLHSAIN------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|2773023|gb|AAC08906.1| regulatory protein PilA [Neisseria meningitidis]
          Length = 144

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/143 (45%), Positives = 93/143 (65%), Gaps = 1/143 (0%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           PL KP     +  P VI++ G+NG GKTT IGKL+K     G  V+LAAGDTFR+AA +Q
Sbjct: 2   PLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAHGKSVLLAAGDTFRAAAREQ 61

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+ W +R +   V S+   D+AA+ ++A + A+A+ +D+++ DTAGRL     LM  I K
Sbjct: 62  LQAWGERNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKK 120

Query: 218 MIRVLKRLDPHAPHSVLQVLDAT 240
           + RVL++  P APH ++ VLDA 
Sbjct: 121 VKRVLQKAMPDAPHEIIVVLDAN 143


>gi|36939157|gb|AAQ86949.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 311

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 117/196 (59%), Gaps = 2/196 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVT-VISQTAGDSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRL 205
           +A+ +D+++ DTAGRL
Sbjct: 295 KARGIDIVLADTAGRL 310


>gi|320102219|ref|YP_004177810.1| signal recognition particle subunit FFH/SRP54 (srp54) [Isosphaera
           pallida ATCC 43644]
 gi|319749501|gb|ADV61261.1| signal recognition particle subunit FFH/SRP54 (srp54) [Isosphaera
           pallida ATCC 43644]
          Length = 495

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 147/286 (51%), Gaps = 14/286 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELI 92
           +++ + + DG+RE +   L+ +D+ + V Q  + ++  +R   +  ++ +  D  + +++
Sbjct: 21  VLTEQNIQDGLRE-VRTALLEADVNLNVVQDFIAKV-KQRAVGEQIIKSIRPDQQIVKIV 78

Query: 93  HKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           H  L+ L    +         P ++++ G+ G GKTT  GKL++ ++  G K ML A D 
Sbjct: 79  HDELVALMGETDATIRFEKTGPTILMLCGLQGSGKTTTCGKLARMLALQGRKPMLVAADL 138

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            R AA++QLK    + +   V +E G     +       A     D +I+DTAGRLH + 
Sbjct: 139 QRPAAVEQLKTLGQQLAIP-VHAETGVGPVQVCQNGVAAAAKAGCDTVILDTAGRLHIDD 197

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  +  + + +K      PH V  V DA TGQ+A+   + F+      G+I+TK+DG 
Sbjct: 198 ELMEELKTIEKKVK------PHHVFFVCDAMTGQDAVASAKAFNEALELDGVILTKLDGD 251

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ARGG  + I     +P+ F+G+GE ++ L PF  +  +  I G  D
Sbjct: 252 ARGGAALSIRQVTGVPIKFMGIGEKLDKLSPFDPRRIAGSILGMGD 297


>gi|269961270|ref|ZP_06175637.1| Signal recognition particle GTPase [Vibrio harveyi 1DA3]
 gi|269834031|gb|EEZ88123.1| Signal recognition particle GTPase [Vibrio harveyi 1DA3]
          Length = 462

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D ++E L ++   L+ +D+ + V ++ V  +  K   
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQAELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +   K V++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEEMMGEIKDLHSAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|293374741|ref|ZP_06621049.1| signal recognition particle protein [Turicibacter sanguinis PC909]
 gi|325837601|ref|ZP_08166448.1| signal recognition particle protein [Turicibacter sp. HGF1]
 gi|292646655|gb|EFF64657.1| signal recognition particle protein [Turicibacter sanguinis PC909]
 gi|325490903|gb|EGC93202.1| signal recognition particle protein [Turicibacter sp. HGF1]
          Length = 475

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 155/307 (50%), Gaps = 19/307 (6%)

Query: 20  GFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L+  +  +    +L     D +  E+   L+ +D+ + V ++ + E+  K  
Sbjct: 2   AFETLSERLQSALKSVTRKGKLTEKDVDVMMREVRLALLEADVNIKVVREFINEVKEKAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIG 129
            + V       Q+V+  V+E + K++   +   N  F H +P V ++VG+ G GKTT  G
Sbjct: 62  GEAVLKSLTPGQQVIKIVNEELTKLMGDSAAELN--FGHAKPAVFMMVGLQGAGKTTHTG 119

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           K+S  +     K  +L A D +R AA+DQLK    + +          +   +A EA   
Sbjct: 120 KISSYLRKKEKKNPLLVACDVYRPAAVDQLKTIGKQLNIPVYEKGTSMNPVDIAKEAMTY 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    D++IIDTAGRLH +  LM  +  +  ++       P  +L V+DA TGQ+A+  
Sbjct: 180 ARENGHDLVIIDTAGRLHIDEQLMDELKNIKELVN------PQEILLVVDAMTGQDAVNV 233

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + FH     TG+++TK+DG  RGG  + I     +P+ F+G+GE ++ LE F  +  ++
Sbjct: 234 AQSFHDQLDLTGVVLTKLDGDTRGGAALSIRKITNVPIKFIGLGEKLDTLEVFHPERMAS 293

Query: 309 VITGCLD 315
            I G  D
Sbjct: 294 RILGMGD 300


>gi|260773522|ref|ZP_05882438.1| signal recognition particle subunit Ffh SRP54 [Vibrio metschnikovii
           CIP 69.14]
 gi|260612661|gb|EEX37864.1| signal recognition particle subunit Ffh SRP54 [Vibrio metschnikovii
           CIP 69.14]
          Length = 456

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 154/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVSRV--KESA 59

Query: 77  KDVSVQRVLYDVSELI----HKM--LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             V V + L    E I    H++  +M  +       +  P +IL+ G+ G GKTT +GK
Sbjct: 60  VGVEVSKSLTPGQEFIKIVRHELETVMGAANEALNLAAQPPAIILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK + +   K V++ + D +R AAI QL+  A+    DF  S        +A  A   A
Sbjct: 120 LSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSSADQKPIDIANAAVDHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVLI+DTAGRL  + ++MA I  +   +       P   L V+DA TGQ+A    
Sbjct: 180 KKKFYDVLIVDTAGRLAVDEVMMAEIKALHSAIN------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LE F     ++ 
Sbjct: 234 KAFGDTLPLTGVILTKVDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEAFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|304315442|ref|YP_003850589.1| signal recognition particle protein Srp54 [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588901|gb|ADL59276.1| signal recognition particle protein Srp54 [Methanothermobacter
           marburgensis str. Marburg]
          Length = 442

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 143/279 (51%), Gaps = 18/279 (6%)

Query: 45  VREELEDL---LIRSDIGVAV----AQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKML 96
           V+E ++D+   LI+SD+ + +    ++ I E  L +   K ++  + ++  V E + K+L
Sbjct: 27  VKEVIKDIQRALIQSDVNIKLVFNLSKSIEERALNEEPPKGITPKEHIISIVYEEMVKLL 86

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              S     +   +P+ IL +G+ G GKTT IGKL++ +   G  V +   DT+R AA +
Sbjct: 87  GERSHELKIE--EKPYRILFLGLQGSGKTTTIGKLARYLRKKGFTVGVVCTDTWRPAAFE 144

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK + +             DA  LA +  ++ Q K  DV+I DTAGR      L+  + 
Sbjct: 145 QLKQYTEGQDISVYGDPENKDALDLAEKGLERFQKK--DVIIFDTAGRHKEEKDLLREME 202

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           ++  V+K      PH  + V+D T GQ A  Q   F        +I+TK+DG+A+GGG +
Sbjct: 203 ELSAVIK------PHEAILVIDGTIGQQAREQALAFREATDIGSIIVTKLDGSAKGGGAL 256

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             V     P+ F+G GE I+DLE F  + F + + G  D
Sbjct: 257 SAVAEIGAPIRFIGTGERIDDLEVFDPERFISRLLGMGD 295


>gi|307151061|ref|YP_003886445.1| signal recognition particle protein [Cyanothece sp. PCC 7822]
 gi|306981289|gb|ADN13170.1| signal recognition particle protein [Cyanothece sp. PCC 7822]
          Length = 487

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 143/279 (51%), Gaps = 25/279 (8%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D IS   + D ++E +   LI +D+ + V +  + E+  +    +V           +++
Sbjct: 20  DKISQSNIQDALKE-VRRALISADVNLQVVKNFIAEVEKQALGAEVISGVNPGQQFIKIV 78

Query: 86  YD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           YD + +++ +  +PL++      S  P VIL+ G+ G GKTT   KL+  +       ++
Sbjct: 79  YDQLVKVMGESNVPLAQA-----STPPTVILMAGLQGTGKTTATAKLALFLRKENRSCLM 133

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTA 202
            A D +R AAIDQL     +   D    E+G++A    +A +  ++A+   VD +IIDTA
Sbjct: 134 VATDVYRPAAIDQLITLGQQI--DVPVFELGTEADPVEIARQGVQKAKELGVDTVIIDTA 191

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL  +  +MA + ++   +K      PH  L V+D+ TGQ A      FH   G TG I
Sbjct: 192 GRLQIDEDMMAELARIKATVK------PHDTLLVVDSMTGQEAATLTHTFHEQIGITGAI 245

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +TK+DG  RGG  + +      P+ F+GVGE +  L+PF
Sbjct: 246 LTKLDGDTRGGAALSVRQVSGQPIKFVGVGEKVEALQPF 284


>gi|196247664|ref|ZP_03146366.1| signal recognition particle protein [Geobacillus sp. G11MC16]
 gi|196212448|gb|EDY07205.1| signal recognition particle protein [Geobacillus sp. G11MC16]
          Length = 433

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    + +   
Sbjct: 88  PTVVMMVGLQGAGKTTTTGKLANLLRKRHNRKPLLVAADVYRPAAIKQLETLGKQLNMPV 147

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 ++   +A +A ++A+ +  D ++IDTAGRLH +  LM  + +M   +K      
Sbjct: 148 FSLGEHANPVEIAKQALERAKEEHHDYVLIDTAGRLHVDEALMDELKQMREAVK------ 201

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +  V+DA TGQ+A+   + FH   G TG+I+TK+DG  RGG  + I      P+ F+
Sbjct: 202 PDEIFLVVDAMTGQDAVNVAQSFHEQLGITGVILTKLDGDTRGGAALSIRAVTGAPIKFV 261

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+GE ++ LEPF  +  ++ I G  D
Sbjct: 262 GMGEKLDALEPFHPERMASRILGMGD 287


>gi|153216299|ref|ZP_01950389.1| signal recognition particle protein [Vibrio cholerae 1587]
 gi|124114341|gb|EAY33161.1| signal recognition particle protein [Vibrio cholerae 1587]
          Length = 459

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 153/307 (49%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K  ++ + D +R AAI QL+  A+    DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKALVVSADVYRPAAIKQLETLANDLGVDFFPSSPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|138894717|ref|YP_001125170.1| Signal recognition particle subunit Ffh/SRP54 [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266230|gb|ABO66425.1| Signal recognition particle, subunit Ffh/SRP54 [Geobacillus
           thermodenitrificans NG80-2]
          Length = 455

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    + +   
Sbjct: 110 PTVVMMVGLQGAGKTTTTGKLANLLRKRHNRKPLLVAADVYRPAAIKQLETLGKQLNMPV 169

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 ++   +A +A ++A+ +  D ++IDTAGRLH +  LM  + +M   +K      
Sbjct: 170 FSLGEHANPVEIAKQALERAKEEHHDYVLIDTAGRLHVDEALMDELKQMREAVK------ 223

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +  V+DA TGQ+A+   + FH   G TG+I+TK+DG  RGG  + I      P+ F+
Sbjct: 224 PDEIFLVVDAMTGQDAVNVAQSFHEQLGITGVILTKLDGDTRGGAALSIRAVTGAPIKFV 283

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+GE ++ LEPF  +  ++ I G  D
Sbjct: 284 GMGEKLDALEPFHPERMASRILGMGD 309


>gi|158522321|ref|YP_001530191.1| signal recognition particle protein [Desulfococcus oleovorans Hxd3]
 gi|158511147|gb|ABW68114.1| signal recognition particle protein [Desulfococcus oleovorans Hxd3]
          Length = 443

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 143/288 (49%), Gaps = 19/288 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           ++ + +DDG++E +   L+ +D+   + ++ + ++  +    DV       Q+V+  V E
Sbjct: 22  LTEKNIDDGLKE-VRFALLEADVHYRIVKQFIADIRERAVGADVLESLTPGQQVIKIVYE 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + +++    +  N      P  +++VG+ G GKTT   KL+  +   G K  L   D +
Sbjct: 81  ELTRLMGETRQDLNLT-GQAPVSVMLVGLQGSGKTTTAAKLAVYLKKQGRKPFLVPADVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAIDQLK    +       S+ G +   +  +A   AQ +  + L++DTAGRLH +  
Sbjct: 140 RPAAIDQLKKLGSQVQVPVFASDPGMNPVDICRQARVAAQQQGCNTLLLDTAGRLHIDEA 199

Query: 211 LM---AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           LM    GI + +         +P  +L V DA TGQ+A+   + F+      G+I++KMD
Sbjct: 200 LMEELVGIKQAV---------SPSDILLVADAMTGQDAVNIAQSFNERLDIGGVILSKMD 250

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G ARGG  + I      P+ F+GVGE  N LE F     ++ I G  D
Sbjct: 251 GDARGGAALSIKAVTGRPIKFVGVGEKTNALEAFHPDRMASSILGMGD 298


>gi|163847609|ref|YP_001635653.1| signal recognition particle protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525465|ref|YP_002569936.1| signal recognition particle protein [Chloroflexus sp. Y-400-fl]
 gi|163668898|gb|ABY35264.1| signal recognition particle protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449344|gb|ACM53610.1| signal recognition particle protein [Chloroflexus sp. Y-400-fl]
          Length = 450

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 156/305 (51%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+     + S  RL +D VRE ++ +   L+ +D+   V ++ V ++  +   
Sbjct: 2   FESLSDRLQAVFQKLGSKGRLTEDDVREAMKQVRLALLEADVNFRVVKEFVAKVTEQAIG 61

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLS 132
           ++V+     +  V +++H+ L+ L    N         P VI++VG+ G GKTT+  KL+
Sbjct: 62  EEVTKSLTPHQQVIKIVHQELINLLGTENVPLQEARPGPTVIMLVGLQGTGKTTLAAKLA 121

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             +   G +V+L A D +R AAI QL+    + +         +    +A  A + A+ +
Sbjct: 122 LHLRKKGKRVLLVAADVYRPAAITQLQALGRQLNIPVYSEGTQASPPDIAEHALEHARKE 181

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             +V+IIDTAGRL  +  LM    ++ ++  R+ P      L V+DA TGQ A+R  E F
Sbjct: 182 LFNVVIIDTAGRLQIDEPLMQ---ELEQIENRVHPI---ERLLVVDAMTGQEAVRVAETF 235

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI--NDLEPFVAKDFSAVI 310
           +     TG++MTKMDG ARGG  + +     +P+ FL  GE +  N LE F     ++ I
Sbjct: 236 NQRVKLTGVVMTKMDGDARGGAALSVRAVTGVPIKFLSTGEKVDGNTLEVFHPDRLASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|58337566|ref|YP_194151.1| signal recognition protein Ffh [Lactobacillus acidophilus NCFM]
 gi|227904208|ref|ZP_04022013.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus acidophilus
           ATCC 4796]
 gi|58254883|gb|AAV43120.1| signal recognition protein Ffh [Lactobacillus acidophilus NCFM]
 gi|227868227|gb|EEJ75648.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus acidophilus
           ATCC 4796]
          Length = 476

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 137/269 (50%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  ++ +  +   K+V       Q+V+  V+E + KM+   + P N   
Sbjct: 39  LLEADVNFKVVKDFIKTIKKEALGKEVQESLNPGQQVIKIVNEELTKMMGEEAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            H P +I++VG+ G GKTT +GKL+  +      + +L AGD +R AA+DQLK   ++  
Sbjct: 98  KHIPTIIMMVGLQGTGKTTTVGKLAYHLQKTQKARPLLIAGDIYRPAAVDQLKQIGEQLK 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                     D A +  +   +A   K D ++IDTAGRL  +  LM    ++ RV K  D
Sbjct: 158 VPVFSENGEKDVAKIVQDGLAEADKNKNDYVLIDTAGRLEIDEPLME---ELERVKKVAD 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P    ++L V+DA TGQ A    + F      TG+I+TK+DG  RGG  + I      P+
Sbjct: 215 PD---NILLVVDAMTGQAATDVAKGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G GE ++DL+ F     ++ I G  D
Sbjct: 272 LFTGQGEKLSDLDVFHPDRMASRILGMGD 300


>gi|238752941|ref|ZP_04614403.1| Signal recognition particle protein [Yersinia rohdei ATCC 43380]
 gi|238708849|gb|EEQ01105.1| Signal recognition particle protein [Yersinia rohdei ATCC 43380]
          Length = 453

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL+K + +   K V++ + D +R AAI QL+  A +  
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLAKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQQVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           ADF  S+       +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++   +K   
Sbjct: 157 ADFFPSDAQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I      P+
Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLGVGE    LEPF     ++ I G  D
Sbjct: 271 KFLGVGEKTEALEPFHPDRIASRILGMGD 299


>gi|115377135|ref|ZP_01464349.1| signal recognition particle [Stigmatella aurantiaca DW4/3-1]
 gi|115365844|gb|EAU64865.1| signal recognition particle [Stigmatella aurantiaca DW4/3-1]
          Length = 481

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV----ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           ++ H  L  L  P +     +P      I++VG+ G GKTT  GKL+ ++   G K +L 
Sbjct: 23  KVCHDELEALMGPVDTSLKLKPRGQLSGIMMVGLQGSGKTTTTGKLANRLLQEGRKPLLV 82

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A D +R AA+DQLK+  +R     V  E G     LA   +  A+ +K DV++IDTAGRL
Sbjct: 83  AADIYRPAAVDQLKVLGERLKVP-VYFEPGVAPPELAVRGYAAAREQKCDVVLIDTAGRL 141

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             +  LMA +  +     + + H P ++L V DA  GQ+A+R    F       G I+TK
Sbjct: 142 AIDESLMAELESI-----KGNVH-PDNILLVCDAMIGQDAVRTAAEFDRRLTLDGFILTK 195

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +DG ARGG  + I      P+ FLG+GE ++ LE F  +  +  I G  D
Sbjct: 196 LDGDARGGAALSIKEVTGKPIKFLGMGESMDKLEEFRPEGLAGRILGFGD 245


>gi|284053369|ref|ZP_06383579.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrospira
           platensis str. Paraca]
          Length = 441

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 148/288 (51%), Gaps = 15/288 (5%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-LTKRYAKDVSVQRVLYDVSELI 92
           D I+   + + ++E +   L+ +D+ + V +  ++E+ +  + ++ VS  +      +++
Sbjct: 20  DKITESNIQEALKE-VRRALLEADVNLMVVKDFIKEVGVQAQGSQVVSGVKPGQQFIKIV 78

Query: 93  HKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           H  L+ +    N   +     P ++L+ G+ G GKTT   KL+  +       +L A D 
Sbjct: 79  HDELVKVMGESNVPLAEAQQPPTIVLMAGLQGTGKTTASAKLALHLQKENRSSLLVATDV 138

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           +R AAIDQL     + +      E+G DA    +A +  +  +A+ +D +IIDTAGRL  
Sbjct: 139 YRPAAIDQLMTLGKQINVPVF--ELGKDADPVEIARQGIEYGKAQGIDTIIIDTAGRLQI 196

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  +MA + ++   ++      PH  L V+DA TGQ A    + F+   G TG I+TKMD
Sbjct: 197 DQNMMAELAQIKETVQ------PHETLLVVDAMTGQEAATLTQTFNDRIGITGAILTKMD 250

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +RGG  + I      P+ F+GVGE +  L+PF  +  ++ I G  D
Sbjct: 251 GDSRGGAALSIRRVSGAPIKFVGVGEKVEALQPFYPERMASRILGMGD 298


>gi|94501301|ref|ZP_01307822.1| Signal recognition particle protein [Oceanobacter sp. RED65]
 gi|94426572|gb|EAT11559.1| Signal recognition particle protein [Oceanobacter sp. RED65]
          Length = 471

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/192 (38%), Positives = 107/192 (55%), Gaps = 7/192 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL++ + +    KVM+ + D +R AAI QL+  A    A F
Sbjct: 100 PAVILMAGLQGAGKTTTVGKLARYLKEREKKKVMVVSADVYRPAAIKQLETLASEVGAQF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+       +A  A K+A+ +  DVLI+DTAGRL  +  +MA I  + + +       
Sbjct: 160 FPSDEKQKPVDIANNAIKEAKTQFADVLIVDTAGRLAVDEDMMAEIQSLHKAID------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA TGQ+A    + F      TG+++TK DG ARGG  + +      P+ F+
Sbjct: 214 PVETLFVVDAMTGQDAANTAKAFSEALPLTGVVLTKADGDARGGAALSVRHVTGKPIKFM 273

Query: 290 GVGEGINDLEPF 301
           G+GE  + LEPF
Sbjct: 274 GMGEKTDALEPF 285


>gi|1711514|sp|P49970|SR543_HORVU RecName: Full=Signal recognition particle 54 kDa protein 3;
           Short=SRP54
 gi|1020004|gb|AAA79356.1| signal recognition particle 54 kDa subunit [Hordeum vulgare]
          Length = 493

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 11/200 (5%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+V++ VG+ G GKTT   K +      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 99  KPNVVMFVGLQGSGKTTTCTKYAHYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPF 158

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S + SD   +A E  ++ + +K D++IIDT+GR    + L   + ++    K      
Sbjct: 159 YGSYMESDPVKIAVEGLEKFRQEKSDLIIIDTSGRHMQEAALFEEMRQVAEATK------ 212

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  V+ V+D + GQ A  Q + F   A    +I+TK+DG A+GGG +  V   K PV F+
Sbjct: 213 PDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIVTKLDGHAKGGGALSAVAATKSPVIFI 272

Query: 290 GVGEGINDL-----EPFVAK 304
           G GE I+D      EPFVA+
Sbjct: 273 GTGEHIDDFDVFNVEPFVAR 292


>gi|254284240|ref|ZP_04959208.1| signal recognition particle protein [gamma proteobacterium NOR51-B]
 gi|219680443|gb|EED36792.1| signal recognition particle protein [gamma proteobacterium NOR51-B]
          Length = 462

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 148/302 (49%), Gaps = 21/302 (6%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV 79
           S SLK   G      SR  +D +R+ L ++   L+ +D+ ++V ++  E +  +    +V
Sbjct: 10  SASLKAMAG-----KSRLTEDNIRDTLREVRMALLEADVALSVVKEFTEAVKQRAVGAEV 64

Query: 80  SV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           +      Q  L  V   +   +   ++  N + +  P V++V G+ G GKTT + KL++ 
Sbjct: 65  AQSLTPGQAFLKVVQSELEATMGSTNESLNLN-TQPPAVVMVAGLQGAGKTTSVAKLARH 123

Query: 135 MSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           + +    KV + + D +R AAI QL+  A+   A F  SE      A+   A  QA+ + 
Sbjct: 124 LIEREKKKVTVVSADVYRPAAIKQLETLANEVGARFEPSEEHEQPVAIVQRALAQAKIQF 183

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DVL++DTAGRL  +  +M+ I  +   +       P   L V+DA TGQ+A      F 
Sbjct: 184 SDVLLVDTAGRLAIDEAMMSEIKALHSAIN------PIETLFVVDAMTGQDAANTANAFG 237

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           A    TG+I+TK+D   RGG  + +      P+ FLGVGE    L+PF     ++ I G 
Sbjct: 238 AALPLTGVILTKVDADTRGGAALSVRAITGKPIKFLGVGEKTEALDPFHPDRLASRILGM 297

Query: 314 LD 315
            D
Sbjct: 298 GD 299


>gi|87125498|ref|ZP_01081343.1| Signal recognition particle protein [Synechococcus sp. RS9917]
 gi|86166798|gb|EAQ68060.1| Signal recognition particle protein [Synechococcus sp. RS9917]
          Length = 492

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 141/280 (50%), Gaps = 16/280 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100
           +G  +E+   L+ +D+ + V +  V E+  K    DV V+ +  D    +++H  L+ + 
Sbjct: 28  EGALKEVRRALLEADVSLPVVKDFVAEVRQKAVGADV-VRGISPDQKFIQVVHDQLVEVM 86

Query: 101 KPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              N   +     P V+L+ G+ G GKTT   KL   + D G + ++   D +R AAIDQ
Sbjct: 87  GGGNAPLARAEQAPTVVLMAGLQGAGKTTATAKLGLYLKDQGRRALMVGADVYRPAAIDQ 146

Query: 158 LKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           L+   ++   +     +G++A    +A     +A+ +  D L++DTAGRL  +  +M   
Sbjct: 147 LRTLGEQIGVEVFS--LGAEAKPEDIASAGLAKARQEGFDTLLVDTAGRLQIDQSMM--- 201

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +M+R+   +    P  VL V+D+  GQ A      FH   G TG ++TK+DG +RGG  
Sbjct: 202 DEMVRIRSAVQ---PDEVLLVVDSMIGQEAAELTRAFHEQVGITGAVLTKLDGDSRGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 259 LSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298


>gi|84490317|ref|YP_448549.1| signal recognition particle protein Srp54 [Methanosphaera
           stadtmanae DSM 3091]
 gi|121731822|sp|Q2NE47|SRP54_METST RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|84373636|gb|ABC57906.1| signal recognition particle, 54 kDa protein [Methanosphaera
           stadtmanae DSM 3091]
          Length = 444

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 145/289 (50%), Gaps = 21/289 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVA--------QKIVEELLTKRYAKDVSVQRVLY 86
           II  + L D V ++++  LI+SD+ V V         ++ +EE L K  +    V R++Y
Sbjct: 21  IIDKKTLKD-VTKDIQRALIQSDVNVKVVFGLTKKIEKRALEEELPKGLSPKEHVMRIVY 79

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
              EL++   +   KP     + +P+ I+++G+ G GKTT   KL K +   G    +  
Sbjct: 80  --QELVN---LIGEKPEELKINRKPYKIMMLGLQGSGKTTTTAKLVKHLKKKGHTSAIVC 134

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DT+R AA +QL+   +             DA  LA +  ++    K DV+++DTAGR  
Sbjct: 135 TDTWRPAAYEQLRQLTEPLDVPVFGDPENKDAIDLAKKGLEKC-GSKYDVILVDTAGRHK 193

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
               L+  + ++ ++++      P  V+ V+D T GQ A  Q E F        +I++K+
Sbjct: 194 EEKDLLDEMAELSQIVQ------PDEVILVIDGTIGQQARSQAETFKKTTDIGSIIVSKL 247

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG+A+GGG +  V   + P+ F+G GE ++D E F  + F + + G  D
Sbjct: 248 DGSAKGGGALSAVAEIRAPIKFIGTGERVDDFEAFDPERFISRLLGMGD 296


>gi|332993927|gb|AEF03982.1| signal recognition particle protein [Alteromonas sp. SN2]
          Length = 476

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + ++    RL +D ++E L ++   L+ +D+ + V +  V ++  +   
Sbjct: 2   FENLSERLGQTLRNVSGKGRLTEDNIKETLREVRMALLEADVALPVIKSFVAQVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +  ++   ++  N   +  P VIL+ G+ G GKTT + KL
Sbjct: 62  TEVTKSLKPGQIFIKIVQSELEAVMGEANEKLNL-ATQPPAVILMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +++    KVM+ + D +R AAI QL+  A   +  F  S I      +   A  +A+
Sbjct: 121 AKYLTEREKKKVMVVSADVYRPAAIKQLETLASEVNVAFHPSTILQTPIHIVEGAIDEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRLH +S +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 KNFFDVLLVDTAGRLHVDSDMMTEIKDLHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ F+G+GE ++ LEPF  +  ++ I
Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRHITGKPIKFIGMGEKVDALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|322435167|ref|YP_004217379.1| signal recognition particle protein [Acidobacterium sp. MP5ACTX9]
 gi|321162894|gb|ADW68599.1| signal recognition particle protein [Acidobacterium sp. MP5ACTX9]
          Length = 465

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 141/277 (50%), Gaps = 18/277 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHK 94
           I+   + D +RE +   L+ SD+ + V + +VE +  K     V+      + + +++H 
Sbjct: 22  ITEENISDAMRE-IRLALLESDVNLEVVKDLVEHIRVKAMGTQVTTALSPSEQIVKIVHD 80

Query: 95  MLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            L+ L       F   S  P V+L+ G+ G GKTT   KL++ +   G + ML + D +R
Sbjct: 81  ELVTLLGKDIAKFRTASQPPSVVLMAGLQGSGKTTTSAKLAQWLKKGGHRPMLVSVDVYR 140

Query: 152 SAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            AA  QL + A  T  +    ++         +   LA EA K+A     D+LI+DTAGR
Sbjct: 141 PAARAQLAVVAKSTGVNLYEGKLDESVQNGTPEVLRLAKEAKKEAANFGCDILIVDTAGR 200

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           L  +++LM  + ++ ++L       P  +L V DA TGQ+A+   + F+ +   TG I+T
Sbjct: 201 LGIDAVLMDEMAELKKLLN------PSEILFVADAMTGQDAVNSAKAFNDLLTITGAILT 254

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           KMDG ARGG  + I      P+ FLG GE  +  EPF
Sbjct: 255 KMDGDARGGAALSIRQVTGAPIKFLGTGEKPDAFEPF 291


>gi|302506196|ref|XP_003015055.1| hypothetical protein ARB_06815 [Arthroderma benhamiae CBS 112371]
 gi|291178626|gb|EFE34415.1| hypothetical protein ARB_06815 [Arthroderma benhamiae CBS 112371]
          Length = 504

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 122/235 (51%), Gaps = 10/235 (4%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           +Q+ ++D  +L+  ++ P ++PF      + +VI++VG+ G GKTT   KL++     G 
Sbjct: 45  IQKAVFD--QLV-ALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKLARHYQTKGF 100

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K  L   DTFR+ A DQLK  A +    +  S   +D   ++ E   + + ++ D++I+D
Sbjct: 101 KAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKKERFDIIIVD 160

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           T+GR      L A + ++   +K      P   + VLD+T GQ A  Q   F + A    
Sbjct: 161 TSGRHRQEEDLFAEMTQIQSAIK------PDQTIMVLDSTIGQAAETQSAAFKSAADFGA 214

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK DG A GGG I  V   + P+ FLG GE + DLE F  + F   + G  D
Sbjct: 215 IIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPRPFVQKLLGMGD 269


>gi|291567513|dbj|BAI89785.1| signal recognition particle protein [Arthrospira platensis NIES-39]
          Length = 470

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 148/288 (51%), Gaps = 15/288 (5%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-LTKRYAKDVSVQRVLYDVSELI 92
           D I+   + + ++E +   L+ +D+ + V +  ++E+ +  + ++ VS  +      +++
Sbjct: 20  DKITESNIQEALKE-VRRALLEADVNLMVVKDFIKEVGVQAQGSQVVSGVKPGQQFIKIV 78

Query: 93  HKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           H  L+ +    N   +     P ++L+ G+ G GKTT   KL+  +       +L A D 
Sbjct: 79  HDELVKVMGESNVPLAEAQQPPTIVLMAGLQGTGKTTASAKLALHLQKENRSSLLVATDV 138

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           +R AAIDQL     + +      E+G DA    +A +  +  +A+ +D +IIDTAGRL  
Sbjct: 139 YRPAAIDQLMTLGKQINVPVF--ELGKDADPVEIARQGIEYGKAQGIDTIIIDTAGRLQI 196

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  +MA + ++   ++      PH  L V+DA TGQ A    + F+   G TG I+TKMD
Sbjct: 197 DQNMMAELAQIKETVQ------PHETLLVVDAMTGQEAATLTQTFNDRIGITGAILTKMD 250

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +RGG  + I      P+ F+GVGE +  L+PF  +  ++ I G  D
Sbjct: 251 GDSRGGAALSIRRVSGAPIKFVGVGEKVEALQPFYPERMASRILGMGD 298


>gi|169830839|ref|YP_001716821.1| signal recognition particle protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637683|gb|ACA59189.1| signal recognition particle protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 452

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 112/205 (54%), Gaps = 7/205 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+++VG+ G GKTT + KL+  +   G + +L A D +R AAI QL++   +     V
Sbjct: 101 PTVVMLVGLQGSGKTTTVAKLANLLKKQGRRPLLVAADVYRPAAIKQLQVLGGQIDVP-V 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S    D  ++A  A +  +    DV+IIDTAGRLH N  LM  + ++   ++      P
Sbjct: 160 FSMGEQDPVSIAGAALESTRKGGQDVVIIDTAGRLHINEELMVELERIKAGVQ------P 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H +L V+DA TGQ+A+   E FH      G+I+TK+DG  RGG  + +      P+ F+G
Sbjct: 214 HEILLVVDAMTGQDAVTVAESFHQRLVLDGVILTKLDGDTRGGAALSVRAVTGCPIKFVG 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           +GE ++ LEPF     +  I G  D
Sbjct: 274 IGEKLDALEPFHPNRMADRILGMGD 298


>gi|190347110|gb|EDK39324.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 560

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 109/204 (53%), Gaps = 6/204 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           H+I+ VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A ++S  +  
Sbjct: 134 HIIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNATKSSIPYYG 193

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S + +D   +A+E   + + +K D++I+DT+GR      L     +M+++ + +    P 
Sbjct: 194 SYLETDPVKVAHEGVVKFRKEKFDIIIVDTSGRHKQEQSL---FDEMVQISEAVQ---PT 247

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             + V+D + GQ A  Q   F   +    +I+TKMDG A+GGG I  V   + P+ F+G 
Sbjct: 248 QTIMVMDGSIGQAAESQARAFKETSDFGSIILTKMDGHAKGGGAISAVAATQTPIVFIGT 307

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE + DLE F    F + + G  D
Sbjct: 308 GEHVGDLETFRPSAFISKLLGIGD 331


>gi|254414856|ref|ZP_05028620.1| signal recognition particle protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196178345|gb|EDX73345.1| signal recognition particle protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 486

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 148/295 (50%), Gaps = 29/295 (9%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D IS   + D ++E +   L+ +D+ + V +K V ++ T     DV           +++
Sbjct: 20  DKISQANIQDALKE-VRRALLSADVNLQVVKKFVADVETTAMGADVIAGVRPDQQFIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL+K    D S  P ++L+ G+ G GKTT   KL+  +       
Sbjct: 79  YD--ELVQVMGESNVPLAKA---DTS--PTIVLMAGLQGTGKTTATAKLALHLGKENRSC 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200
           ++ A D +R AAIDQL    ++   +    E+G+D     +A +    A+   VD +IID
Sbjct: 132 LMVATDVYRPAAIDQLVTLGEQI--NIPVFEMGTDTNPVEIACQGVAHAKETGVDTVIID 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  ++ +MA + ++   +K      P  VL V+DA TGQ A      F+   G TG
Sbjct: 190 TAGRLQIDAEMMAELAQIKDNVK------PDEVLLVVDAMTGQEAATLTHTFNQQIGITG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I+TK+DG  RGG  + +      P+ F+GVGE +  L+PF     ++ I G  D
Sbjct: 244 AILTKLDGDTRGGAALSVRQVSGQPIKFVGVGEKVEALQPFYPDRMASRILGMGD 298


>gi|145341290|ref|XP_001415746.1| IISP family transporter: signal recognition particle protein
           (SRP54) [Ostreococcus lucimarinus CCE9901]
 gi|144575969|gb|ABO94038.1| IISP family transporter: signal recognition particle protein
           (SRP54) [Ostreococcus lucimarinus CCE9901]
          Length = 498

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72
           FA  S KL +    +   + L+ D V+  L+D+   L+ +D+ + V ++ +    E+ + 
Sbjct: 7   FAGMSDKLDKAWARLQGEKDLNADNVKAPLKDVRRALLEADVSLPVVRRFIARCEEKAVG 66

Query: 73  KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +  K V   ++L      EL   M    ++   +     P V+L+ G+ GVGKTT  GK
Sbjct: 67  MKVTKGVEPGQMLVKCVADELCELMGGVGAEGIKFRDDGEPTVVLMAGLQGVGKTTACGK 126

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS  +   G  V+L A D +R AAIDQLK    +         +  +   +A    ++A+
Sbjct: 127 LSLALRKQGKSVLLVATDVYRPAAIDQLKTLGKQIGVPVFDMGVDGNPPEIAARGVRKAK 186

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DV+I+DTAGRL+ +  LM      ++  K  +  +    L V+DA TGQ A     
Sbjct: 187 DEDIDVVIVDTAGRLNIDEKLMG----ELKATK--EATSADETLLVVDAMTGQEAATLTA 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG I+TKMDG  RGG  + +      P+ F GVGE ++ LEPF  +  ++ I
Sbjct: 241 SFNEAVEITGAILTKMDGDTRGGAALSVREVSGKPIKFTGVGEKMDALEPFYPERMTSRI 300

Query: 311 TGCLD 315
            G  D
Sbjct: 301 LGMGD 305


>gi|157960876|ref|YP_001500910.1| signal recognition particle protein [Shewanella pealeana ATCC
           700345]
 gi|157845876|gb|ABV86375.1| signal recognition particle protein [Shewanella pealeana ATCC
           700345]
          Length = 457

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL ++ V+E L ++   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNSVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   +   +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELENAMGEANEALDLS-AQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +   K V++ + D +R AAI QL+  A      F  S++      +A  A   A+
Sbjct: 121 SKFLREREKKSVLVVSADVYRPAAIKQLETLAAEVDVQFFPSDVSQKPVDIANAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDEAMMDEIKELHAAVK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LE F     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEAFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|226325149|ref|ZP_03800667.1| hypothetical protein COPCOM_02941 [Coprococcus comes ATCC 27758]
 gi|225206497|gb|EEG88851.1| hypothetical protein COPCOM_02941 [Coprococcus comes ATCC 27758]
          Length = 454

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 154/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++ S  RL +D V+  L ++   L+ +D+   V +  V+ +  +   
Sbjct: 3   FDSLTEKLQNVFKNLRSKGRLTEDDVKAALREVKMALLEADVNFKVVKNFVKSVQERAVG 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V++ +  ++   +    +    +  VI+++G+ G GKTT   KL
Sbjct: 63  QDVMSGLNPGQMVIKIVNDELVNLMGSETTEIKFQPGSQKTVIMMMGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G K +L A D +R AAI QL+I  ++   +          A +A  A + A+ 
Sbjct: 123 AGKFKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSMGDNQKPANIAKAALEHAEK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +V+I+DTAGRLH +  +M  + ++   ++       H  + V+DA TGQ+A+   E 
Sbjct: 183 NGNNVIILDTAGRLHIDEEMMEELQEIKNTVE------VHQSILVVDAMTGQDAVNVAEN 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FNEKIGIDGVIVTKLDGDTRGGAALSIKAVTGCPILYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|56419731|ref|YP_147049.1| signal recognition particle GTPase [Geobacillus kaustophilus
           HTA426]
 gi|297530628|ref|YP_003671903.1| signal recognition particle protein [Geobacillus sp. C56-T3]
 gi|319766210|ref|YP_004131711.1| signal recognition particle protein [Geobacillus sp. Y412MC52]
 gi|56379573|dbj|BAD75481.1| signal recognition particle GTPase [Geobacillus kaustophilus
           HTA426]
 gi|297253880|gb|ADI27326.1| signal recognition particle protein [Geobacillus sp. C56-T3]
 gi|317111076|gb|ADU93568.1| signal recognition particle protein [Geobacillus sp. Y412MC52]
          Length = 446

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 112/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTTGKLANLLRKRHNRKPLLVAADVYRPAAIKQLETLGKQLDMPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 ++   +A +A ++A+ +  D ++IDTAGRLH +  LM  + +M   +K      
Sbjct: 161 FSLGEHANPVEIAKQALERAKEEHYDYVLIDTAGRLHIDEALMDELKQMKEAVK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +  V+DA TGQ+A+   + FH   G TG+I+TK+DG  RGG  + I      P+ F 
Sbjct: 215 PDEIFLVVDAMTGQDAVNVAQSFHEQLGITGVILTKLDGDTRGGAALSIRAVTGAPIKFA 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+GE ++ LEPF  +  ++ I G  D
Sbjct: 275 GMGEKLDALEPFHPERMASRILGMGD 300


>gi|326487934|dbj|BAJ89806.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326495310|dbj|BAJ85751.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 554

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 156/309 (50%), Gaps = 23/309 (7%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT G  S   KL+ G+ D+++   + + +R+ +   L+ +D+ + V ++ V  +  K  
Sbjct: 74  QLTTGLESAWNKLR-GV-DVLTKETIVEPMRD-IRRALLEADVSLPVVRRFVSSVSEKAL 130

Query: 76  AKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
             DV         + ++++D  EL+  M   +S   +  F+   P VIL+ G+ GVGKTT
Sbjct: 131 GSDVIRGIRPEQQLVKIVHD--ELVQLMGGEVS---DLVFAKTGPTVILLAGLQGVGKTT 185

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           V  KL+  +   G   ML A D +R AAIDQL +  ++           +  A +   A 
Sbjct: 186 VCAKLAFYLKKLGKSCMLVAADVYRPAAIDQLTVLGEQVGVPVYSEGTTAKPAEITKNAM 245

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+   +D +++DTAGRL  +  +M  + ++ + +       P  +L V+DA TGQ A 
Sbjct: 246 EEAKRNNIDAIVVDTAGRLQIDKTMMVELKEVKKSVN------PTEILLVVDAMTGQEAA 299

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             V  F+   G +G I+TK+DG +RGG  + +      P+ F+G GE + DLE F     
Sbjct: 300 ALVTTFNIEIGISGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERMEDLELFYPDRM 359

Query: 307 SAVITGCLD 315
           +  + G  D
Sbjct: 360 AQRVLGMGD 368


>gi|289596592|ref|YP_003483288.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Aciduliprofundum boonei T469]
 gi|289534379|gb|ADD08726.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Aciduliprofundum boonei T469]
          Length = 449

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 158/313 (50%), Gaps = 33/313 (10%)

Query: 9   ESL-SWIRKLTK-GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           ESL + IRK++K G+   SL +KE + DI              +  L+R+D+ V +A K+
Sbjct: 7   ESLRNTIRKISKAGYVDESL-IKEVVRDI--------------QRALLRADVEVHLALKL 51

Query: 67  VEEL----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            + +    L ++    +S +  L  +  +  +++  L K    + + +P  +++VG+ G 
Sbjct: 52  SKNVERRALEEKPPSGMSHRDFLIKI--IYEELVAILGK--EKEVALKPQKLMLVGLYGQ 107

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GKL++     GL V L A D  R AA +QLK   ++ +          DA  +A
Sbjct: 108 GKTTTAGKLARYFHKKGLSVALIACDVHRPAAYEQLKQIGEQLNVPVFGIPGEKDARKIA 167

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            EA K+   K   V I DT+GR      L+  I  +  +++      P  +  VLDAT G
Sbjct: 168 REAVKKM--KDYQVQIFDTSGRHALEDDLIEEIKDLKEIIQ------PDEIFLVLDATIG 219

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q A +Q + FH   G TG+I+TKMDG+A+GGG +  V     PV F+G GE + DLE F 
Sbjct: 220 QQAGKQAKAFHDAVGVTGVIITKMDGSAKGGGALSAVAATGAPVVFIGTGEHLEDLEHFN 279

Query: 303 AKDFSAVITGCLD 315
              F + + G  D
Sbjct: 280 PTRFISRLLGMGD 292


>gi|114321087|ref|YP_742770.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227481|gb|ABI57280.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 456

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+L+ G+ G GKTT   KL++ +++    KV++ + D +R AAI+QL+  AD    ++
Sbjct: 100 PAVVLLAGLQGSGKTTSTAKLARYLTEREKKKVLVVSCDIYRPAAIEQLRTLADEVGVEW 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A  A   A+ +  DVL++DTAGRLH +  LM  + ++ + +       
Sbjct: 160 FPSAADQDPERIARAALDHARKQFFDVLLVDTAGRLHIDQDLMDEVQRLHKAV------T 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+D+ TGQ+A      FH     TG+I+TK DG ARGG  + I      P+ FL
Sbjct: 214 PVETLFVVDSMTGQDAANTARAFHDALPLTGVILTKTDGDARGGAALSIRHITGKPIKFL 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE    LEPF     ++ I G  D
Sbjct: 274 GVGEKTTALEPFHPDRVASRILGMGD 299


>gi|27573183|gb|AAO19991.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 311

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 116/196 (59%), Gaps = 2/196 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W +R +   +    G D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTG-DSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRL 205
           +A+ +D+++ DTAGRL
Sbjct: 295 KARGIDIVLADTAGRL 310


>gi|307823514|ref|ZP_07653743.1| signal recognition particle protein [Methylobacter tundripaludum
           SV96]
 gi|307735499|gb|EFO06347.1| signal recognition particle protein [Methylobacter tundripaludum
           SV96]
          Length = 464

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 115/209 (55%), Gaps = 13/209 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT + KL + +  +   KV + + D +R AAI QL++ A+  S DF
Sbjct: 111 PAIILMAGLQGAGKTTTVAKLGRWLKENQKKKVGVVSADVYRPAAIKQLQMLANELSLDF 170

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+I      +A  A + A+ K +DV+IIDTAGRLH +  +M  I ++         HA
Sbjct: 171 FESDISQKPVDIAKNAIEAAKKKFLDVIIIDTAGRLHIDDEMMGEIKEL---------HA 221

Query: 230 ---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D+ TGQ+A    + F+     TG+I+TK DG ARGG  + I      P+
Sbjct: 222 AINPVETLFVVDSMTGQDAAITAKAFNDALPLTGIILTKADGDARGGAALSIRHITGKPI 281

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE  + LEPF     ++ I G  D
Sbjct: 282 KFIGMGEKTDALEPFYPDRIASRILGMGD 310


>gi|167756882|ref|ZP_02429009.1| hypothetical protein CLORAM_02431 [Clostridium ramosum DSM 1402]
 gi|237734592|ref|ZP_04565073.1| signal recognition particle GTPase [Mollicutes bacterium D7]
 gi|167703057|gb|EDS17636.1| hypothetical protein CLORAM_02431 [Clostridium ramosum DSM 1402]
 gi|229382412|gb|EEO32503.1| signal recognition particle GTPase [Coprobacillus sp. D7]
          Length = 464

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 151/303 (49%), Gaps = 14/303 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELED----LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+  +  +    RL +   EE+       L+ +D+   V ++ +     K   
Sbjct: 3   FDSLSERLQGTLKKVSGQGRLTEKNMEEMLSEIRLALLEADVNFQVVKEFIAATKEKALG 62

Query: 77  KDV-SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           +DV    +    V +++H  L+ L  +     DF  +P VI++VG+ G GKTT  GK++K
Sbjct: 63  QDVLGSLKPGQVVVKIVHDELVSLLGTSVAEVDFDKKPTVIMMVGLQGSGKTTTSGKIAK 122

Query: 134 KMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            ++   G K +L A D +R AA+DQLK   ++ +           A ++  EA   A+  
Sbjct: 123 LITKKYGKKPLLVAADIYRPAAVDQLKTLGEQLNVPVYEKGTSQSAESIVEEAMTFARDH 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV+IIDTAGRLH +  LM  +  + ++        P  +L V+DA TGQ+ +     F
Sbjct: 183 NNDVIIIDTAGRLHIDEPLMNELANIKKI------AHPSEILLVVDALTGQDIVNVASSF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     TG ++TK+DG +RGGG + I     +P+ F+G GE ++ ++ F     +  I G
Sbjct: 237 NEQLSITGAVLTKLDGDSRGGGALSIRHITNVPIKFIGTGEKLDAIDLFYPDRMADRILG 296

Query: 313 CLD 315
             D
Sbjct: 297 MGD 299


>gi|260663573|ref|ZP_05864463.1| signal recognition particle protein [Lactobacillus fermentum
           28-3-CHN]
 gi|260552114|gb|EEX25167.1| signal recognition particle protein [Lactobacillus fermentum
           28-3-CHN]
          Length = 484

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 148/282 (52%), Gaps = 20/282 (7%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96
           +RE + ++   L+ +D+   V +  V+ +  K    +V       Q+++  V++ + +M+
Sbjct: 36  LRETMREIRLALLEADVNFKVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVNDELTEMM 95

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAI 155
              + P N   +H P VI++VG+ G GKTT  GKL+K++  +   + +  A D +R AAI
Sbjct: 96  GETATPLNKS-AHIPTVIMMVGLQGAGKTTTAGKLAKRLKKEENARPLFIAADVYRPAAI 154

Query: 156 DQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
            QL+  A   S D    E+G+D     +  +  + A+ K  D +IIDTAGRL  +  LM 
Sbjct: 155 TQLQQVA--ASIDVPVFEMGTDVDPVEIVRQGMEVAKEKHNDYVIIDTAGRLQIDEQLME 212

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+  + K      P  +L V+DA TGQNA+   + F      TG+++TK+DG  RGG
Sbjct: 213 ELAKIKELAK------PDEILLVVDAMTGQNAVNTAQGFDDQLDITGVVLTKLDGDTRGG 266

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F+G GE +++L+ F     ++ I G  D
Sbjct: 267 AAMSIRAVTGKPIKFVGEGEKMDNLDVFHPDRMASRILGMGD 308


>gi|271501692|ref|YP_003334718.1| signal recognition particle protein [Dickeya dadantii Ech586]
 gi|270345247|gb|ACZ78012.1| signal recognition particle protein [Dickeya dadantii Ech586]
          Length = 453

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 112/212 (52%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +    KV++ + D +R AAI QL+  A    
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLGKFLREKQKKKVLVVSADVYRPAAIKQLETLAQTVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S+       +   A + A+ K  DVL++DTAGRLH +  +M  I ++        
Sbjct: 157 VDFFPSDANEKPVDIVNRALQHAKLKFYDVLLVDTAGRLHVDDAMMDEIKQV-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+I+TK+DG ARGG  + I     
Sbjct: 209 -HASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVILTKIDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 268 KPIKFLGVGEKTDALEPFYPDRIASRILGMGD 299


>gi|163743789|ref|ZP_02151162.1| signal recognition particle protein [Phaeobacter gallaeciensis
           2.10]
 gi|161382938|gb|EDQ07334.1| signal recognition particle protein [Phaeobacter gallaeciensis
           2.10]
          Length = 507

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 139/269 (51%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+ +  +   + V+      Q+V+  V + +  +L     P     
Sbjct: 38  LLEADVSLPVARDFVKRVQEQATGQAVTKSVTPGQQVVKIVHDALVDVLRGAEDPGQLKV 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT  GKL+K++ D  G +V++A+ D +R AA+DQL +   +  
Sbjct: 98  DNPPAPILMVGLQGSGKTTTTGKLAKRLKDKDGKRVLMASLDVYRPAAMDQLAVLGTQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G     +A  A +QA     DV ++DTAGRL  + +LM  +  +  V+    
Sbjct: 158 VDTLPIVPGQKPVDIAKRAKQQAALGGYDVYMLDTAGRLQIDEVLMQEVEDVRDVV---- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             +P   L V+D  TGQ A+   E F A  G +G+++T+MDG  RGG  + +      P+
Sbjct: 214 --SPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ +E F     +  I G  D
Sbjct: 272 RFVGLGEKMDAIETFEPDRIAGRILGMGD 300


>gi|82703253|ref|YP_412819.1| signal recognition particle protein [Nitrosospira multiformis ATCC
           25196]
 gi|82411318|gb|ABB75427.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nitrosospira
           multiformis ATCC 25196]
          Length = 449

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 113/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+K  M     KV+L + D +R AAI QL++ A +T A+F
Sbjct: 100 PAVILMAGLQGAGKTTSSGKLAKWLMEQKKKKVLLVSCDIYRPAAIQQLELLARQTGAEF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
              + G     +A  A   A+    DV+I+DTAGRL  +  +MA I ++  +LK      
Sbjct: 160 FPVQAGQQPKEIAAAALNFARRHFHDVMIVDTAGRLAIDEAMMAEISELEALLK------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F      TG+++TK+DG ARGG  + ++     P+ F 
Sbjct: 214 PIETLFVVDAMQGQDAVNTAKAFSEALPLTGVVLTKLDGDARGGAALSVLHVTGKPIKFA 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E +  LEPF     ++ I G  D
Sbjct: 274 GVAEKLTGLEPFHPDRMASRILGMGD 299


>gi|163738195|ref|ZP_02145611.1| chorismate mutase [Phaeobacter gallaeciensis BS107]
 gi|161388811|gb|EDQ13164.1| chorismate mutase [Phaeobacter gallaeciensis BS107]
          Length = 507

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 139/269 (51%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+ +  +   + V+      Q+V+  V + +  +L     P     
Sbjct: 38  LLEADVSLPVARDFVKRVQEQATGQAVTKSVTPGQQVVKIVHDALVDVLRGAEDPGQLKV 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT  GKL+K++ D  G +V++A+ D +R AA+DQL +   +  
Sbjct: 98  DNPPAPILMVGLQGSGKTTTTGKLAKRLKDKEGKRVLMASLDVYRPAAMDQLAVLGTQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G     +A  A +QA     DV ++DTAGRL  + +LM  +  +  V+    
Sbjct: 158 VDTLPIVPGQKPVDIAKRAKQQAALGGYDVYMLDTAGRLQIDEVLMQEVEDVRDVV---- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             +P   L V+D  TGQ A+   E F A  G +G+++T+MDG  RGG  + +      P+
Sbjct: 214 --SPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ +E F     +  I G  D
Sbjct: 272 RFVGLGEKMDAIETFEPDRIAGRILGMGD 300


>gi|257870294|ref|ZP_05649947.1| signal recognition particle protein [Enterococcus gallinarum EG2]
 gi|257804458|gb|EEV33280.1| signal recognition particle protein [Enterococcus gallinarum EG2]
          Length = 472

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 163/309 (52%), Gaps = 23/309 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ +    ++ +  V+E + ++   L+ +D+ + V ++  + +  +  
Sbjct: 2   AFESLTERLQQAMSKLRKKGKVSEADVKEMMREIRLALLEADVNLQVVKEFTKNVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129
             +V       Q+++  V E + K L   S+    + S + P VI++ G+ G GKTT  G
Sbjct: 62  GAEVLDSLSPAQQIVKIVDEELTKTLG--SETVGIEKSPKIPTVIMMAGLQGAGKTTFAG 119

Query: 130 KLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAF 186
           KL+  +      + ++ AGD +R AAIDQLK+   +   D    ++G+D +   +  +  
Sbjct: 120 KLANHLIKTENARPLMIAGDVYRPAAIDQLKVLGQQL--DVPVFDMGTDVSPVEIVRQGM 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+ KK D ++IDTAGRLH +  LM  + K I+ L +     P+ +L V+DA TGQ+A+
Sbjct: 178 ALAREKKNDYVLIDTAGRLHIDETLMDEL-KQIKELAQ-----PNEILLVVDAMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+   G TG+++TK+DG  RGG  + I      P+ F G GE + DLE F     
Sbjct: 232 NVADSFNQQLGITGVVITKLDGDTRGGAALSIRQVTGAPIKFTGTGEKLTDLEVFHPDRM 291

Query: 307 SAVITGCLD 315
           S+ I G  D
Sbjct: 292 SSRILGMGD 300


>gi|67902518|ref|XP_681515.1| SR54_ASPNG SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN HOMOLOG
           [Aspergillus nidulans FGSC A4]
 gi|40739794|gb|EAA58984.1| SR54_ASPNG SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN HOMOLOG
           [Aspergillus nidulans FGSC A4]
 gi|259481033|tpe|CBF74199.1| TPA: hypothetical protein similar to srpA gene product (Broad)
           [Aspergillus nidulans FGSC A4]
          Length = 542

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 146/308 (47%), Gaps = 29/308 (9%)

Query: 27  KLKEGITDIISSRRLDD-----GVR------EELEDLLIRSDIGVAVAQKIVEEL----- 70
           ++   + D+  S  LD+     GV+      +E+   L+ +D+ V + Q + + +     
Sbjct: 9   RINAAVNDLTRSPNLDEKMLILGVKAFEEMLKEICAALLSADVNVRLVQSLRKSIKASVN 68

Query: 71  ---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
              L     K   +Q+ ++D  EL+  ++ P ++PF      R +VI+ VG+ G GKTT 
Sbjct: 69  FASLPAAVNKKRVIQKAVFD--ELV-ALVNPHAEPFRPK-KGRSNVIMFVGLQGAGKTTT 124

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   
Sbjct: 125 CTKLARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVA 184

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           + + ++ +++I+DT+GR      L   + ++   +       P   + VLD T GQ A  
Sbjct: 185 KFKKERFEIIIVDTSGRHKQEEQLFTEMTQIQTAV------TPDQTILVLDGTIGQAAEV 238

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F 
Sbjct: 239 QSSAFKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFI 298

Query: 308 AVITGCLD 315
             + G  D
Sbjct: 299 QKLLGMGD 306


>gi|332977903|gb|EGK14651.1| signal recognition particle protein Ffh [Psychrobacter sp.
           1501(2011)]
          Length = 516

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 158/309 (51%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  I  S +L +D +++ L ++   L+ +D+ + + +  V+ +  +   
Sbjct: 2   FDTLTERLSGSLRKISGSGQLNEDNIKDTLREVRMALLEADVALPITRDFVKRVKEQALG 61

Query: 77  KDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTV 127
           ++V        +  +++YD  EL   M    S     + + +P VI L+ G+ G GKTT 
Sbjct: 62  QEVLKELAPGQAFVKIVYD--ELTEMMG---SANQQLEMTGKPPVIYLLAGLQGAGKTTT 116

Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL+K + +    KVML + D +R AAI QL+  A + +A FV S    +   +A  A 
Sbjct: 117 ASKLAKYLQERHKKKVMLVSADVYRPAAIKQLEQVAGQVNAKFVNSSTDENPIDIAKRAI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D+LIIDTAGRLH +  +M  I  +   +       P   L V+DA TGQ+A 
Sbjct: 177 EEAKLQYQDILIIDTAGRLHIDEAMMDEIKALTAAVN------PSETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+I+TK DG ARGG  + +      P+ FLG GE ++ LE F  +  
Sbjct: 231 NTAKAFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLDALEAFHPERI 290

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 291 AQRILGMGD 299


>gi|227515698|ref|ZP_03945747.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus fermentum
           ATCC 14931]
 gi|227085946|gb|EEI21258.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus fermentum
           ATCC 14931]
          Length = 476

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 148/282 (52%), Gaps = 20/282 (7%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96
           +RE + ++   L+ +D+   V +  V+ +  K    +V       Q+++  V++ + +M+
Sbjct: 28  LRETMREIRLALLEADVNFKVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVNDELTEMM 87

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAI 155
              + P N   +H P VI++VG+ G GKTT  GKL+K++  +   + +  A D +R AAI
Sbjct: 88  GETATPLNKS-AHIPTVIMMVGLQGAGKTTTAGKLAKRLKKEENARPLFIAADVYRPAAI 146

Query: 156 DQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
            QL+  A   S D    E+G+D     +  +  + A+ K  D +IIDTAGRL  +  LM 
Sbjct: 147 TQLQQVA--ASIDVPVFEMGTDVDPVEIVRQGMEVAKEKHNDYVIIDTAGRLQIDEQLME 204

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+  + K      P  +L V+DA TGQNA+   + F      TG+++TK+DG  RGG
Sbjct: 205 ELAKIKELAK------PDEILLVVDAMTGQNAVNTAQGFDDQLDITGVVLTKLDGDTRGG 258

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F+G GE +++L+ F     ++ I G  D
Sbjct: 259 AAMSIRAVTGKPIKFVGEGEKMDNLDVFHPDRMASRILGMGD 300


>gi|294622904|ref|ZP_06701817.1| signal recognition particle protein [Enterococcus faecium U0317]
 gi|291597676|gb|EFF28829.1| signal recognition particle protein [Enterococcus faecium U0317]
          Length = 472

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 119/208 (57%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++ G+ G GKTT  GKL+  +  +   + +L AGD +R AAIDQLK+   +   D 
Sbjct: 101 PTVIMMAGLQGAGKTTFTGKLANYLKKNENARPLLIAGDVYRPAAIDQLKVLGQQL--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              ++G++ +   +  +  + A+ KK D ++IDTAGRLH +  LM  + K I+ L +   
Sbjct: 159 PVFDMGTEVSPVEIVRQGMELAKEKKNDYVLIDTAGRLHIDETLMDEL-KQIKELTQ--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA TGQ+A+   + F+   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PNEILLVVDAMTGQDAVNVADSFNQQLGITGVVITKLDGDTRGGAALSIRSVTGAPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G GE + DLE F     ++ I G  D
Sbjct: 273 FIGSGEKLTDLEVFHPDRMASRILGMGD 300


>gi|119946973|ref|YP_944653.1| signal recognition particle protein [Psychromonas ingrahamii 37]
 gi|119865577|gb|ABM05054.1| signal recognition particle subunit FFH/SRP54 (srp54) [Psychromonas
           ingrahamii 37]
          Length = 457

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++    RL +D +++ L ++   L+ +D+ + V +  +E + T+   
Sbjct: 2   FENLTERLSKTLKNVSGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFIEAIKTRSVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV+      Q  +  V   +   +  +++  +   +  P ++L+ G+ G GKTT + KL
Sbjct: 62  QDVAKSLSPGQAFIKIVQNELELAMGEVNESLDL-ATQPPAILLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            + +     K V++ + D +R AAI QL+  A     +F  S+I      +A  A   A+
Sbjct: 121 GRLLKTRDKKSVLVVSADIYRPAAIKQLETLAAEVGVEFFPSDITQKPIDIANAAIAYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  + R +K      P   L V+DA TGQ+A    +
Sbjct: 181 KKFIDVVIVDTAGRLHVDGEMMDEIKDLHRAIK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ F+G+GE ++ LE F     ++ I
Sbjct: 235 SFNETLPLTGIILTKADGDARGGAALSIRHITGKPIKFIGMGEKVDALEAFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|257867539|ref|ZP_05647192.1| signal recognition particle protein [Enterococcus casseliflavus
           EC30]
 gi|257873868|ref|ZP_05653521.1| signal recognition particle protein [Enterococcus casseliflavus
           EC10]
 gi|257877619|ref|ZP_05657272.1| signal recognition particle protein [Enterococcus casseliflavus
           EC20]
 gi|325571330|ref|ZP_08146830.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Enterococcus casseliflavus
           ATCC 12755]
 gi|257801595|gb|EEV30525.1| signal recognition particle protein [Enterococcus casseliflavus
           EC30]
 gi|257808032|gb|EEV36854.1| signal recognition particle protein [Enterococcus casseliflavus
           EC10]
 gi|257811785|gb|EEV40605.1| signal recognition particle protein [Enterococcus casseliflavus
           EC20]
 gi|325155806|gb|EGC68002.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Enterococcus casseliflavus
           ATCC 12755]
          Length = 472

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 115/208 (55%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++ G+ G GKTT  GKL+  +      + ++ AGD +R AAIDQLK+   +   D 
Sbjct: 101 PTIIMMAGLQGAGKTTFAGKLANHLIKTENARPLMIAGDVYRPAAIDQLKVLGQQL--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              ++G+D +   +  +    A+ KK D ++IDTAGRLH +  LM  + K I+     D 
Sbjct: 159 PVFDMGTDVSPVEIVRQGLALAREKKNDYVLIDTAGRLHIDENLMEEL-KQIK-----DL 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA TGQ+A+   E F+   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 213 AQPNEILLVVDAMTGQDAVNVAESFNQQLGITGVVITKLDGDTRGGAALSIRQVTGAPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE + DLE F     S+ I G  D
Sbjct: 273 FTGTGEKLTDLEVFHPDRMSSRILGMGD 300


>gi|116072341|ref|ZP_01469608.1| Signal recognition particle protein [Synechococcus sp. BL107]
 gi|116064863|gb|EAU70622.1| Signal recognition particle protein [Synechococcus sp. BL107]
          Length = 486

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 143/280 (51%), Gaps = 16/280 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100
           DG  +E+   L+ +D+ + V +  V E+  K    +V V+ V  D    +++H  L+ + 
Sbjct: 28  DGALKEVRRALLEADVSLPVVKDFVSEVRGKAVGAEV-VRGVSPDQKFIQVVHDQLVDVM 86

Query: 101 KPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              N      S  P V+L+ G+ G GKTT   KL   + D G + ++   D +R AAI+Q
Sbjct: 87  GGDNAPLARASETPTVVLMAGLQGAGKTTATAKLGLHLKDQGRRSLMVGADVYRPAAIEQ 146

Query: 158 LKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           LK    +   D     +G+DA    +A     +A+A+  D L++DTAGRL  ++ +M   
Sbjct: 147 LKTLGGQIGVDVFS--LGTDAKPEEIAAAGLAKAKAEGYDTLLVDTAGRLQIDTEMM--- 201

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
           G+M+R+   +    P  VL V+D+  GQ A      FH   G TG ++TK+DG +RGG  
Sbjct: 202 GEMVRIRSAVQ---PDEVLLVVDSMIGQEAAELTRAFHEQVGITGAVLTKLDGDSRGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 259 LSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298


>gi|227551902|ref|ZP_03981951.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Enterococcus faecium
           TX1330]
 gi|257884147|ref|ZP_05663800.1| signal recognition particle protein [Enterococcus faecium
           1,231,501]
 gi|257886935|ref|ZP_05666588.1| signal recognition particle protein [Enterococcus faecium
           1,141,733]
 gi|257895507|ref|ZP_05675160.1| signal recognition particle protein [Enterococcus faecium Com12]
 gi|257898122|ref|ZP_05677775.1| signal recognition particle protein [Enterococcus faecium Com15]
 gi|293378372|ref|ZP_06624541.1| signal recognition particle protein [Enterococcus faecium PC4.1]
 gi|293571524|ref|ZP_06682547.1| signal recognition particle protein [Enterococcus faecium E980]
 gi|227178974|gb|EEI59946.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Enterococcus faecium
           TX1330]
 gi|257819985|gb|EEV47133.1| signal recognition particle protein [Enterococcus faecium
           1,231,501]
 gi|257822989|gb|EEV49921.1| signal recognition particle protein [Enterococcus faecium
           1,141,733]
 gi|257832072|gb|EEV58493.1| signal recognition particle protein [Enterococcus faecium Com12]
 gi|257836034|gb|EEV61108.1| signal recognition particle protein [Enterococcus faecium Com15]
 gi|291608390|gb|EFF37689.1| signal recognition particle protein [Enterococcus faecium E980]
 gi|292643236|gb|EFF61377.1| signal recognition particle protein [Enterococcus faecium PC4.1]
          Length = 472

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 119/208 (57%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++ G+ G GKTT  GKL+  +  +   + +L AGD +R AAIDQLK+   +   D 
Sbjct: 101 PTVIMMAGLQGAGKTTFTGKLANYLKKNENARPLLIAGDVYRPAAIDQLKVLGQQL--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              ++G++ +   +  +  + A+ KK D ++IDTAGRLH +  LM  + K I+ L +   
Sbjct: 159 PVFDMGTEVSPVEIVRQGMELAREKKNDYVLIDTAGRLHIDETLMDEL-KQIKELTQ--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA TGQ+A+   + F+   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PNEILLVVDAMTGQDAVNVADSFNQQLGITGVVITKLDGDTRGGAALSIRSVTGAPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G GE + DLE F     ++ I G  D
Sbjct: 273 FIGSGEKLTDLEVFHPDRMASRILGMGD 300


>gi|77457245|ref|YP_346750.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pseudomonas
           fluorescens Pf0-1]
 gi|77381248|gb|ABA72761.1| signal recognition particle protein [Pseudomonas fluorescens Pf0-1]
          Length = 458

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 155/309 (50%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D +     P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S++      +A  A K+A
Sbjct: 120 LARFLKERKKKSVMVVSADIYRPAAIKQLETLANDIGVTFFPSDLSQKPVDIANAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K +DV+I+DTAGRLH +  +M  I  +         HA   P   L V+DA TGQ+A 
Sbjct: 180 KLKFIDVVIVDTAGRLHIDEEMMGEIKAL---------HAAINPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    L+PF  +  
Sbjct: 231 NTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALDPFHPERI 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|262273655|ref|ZP_06051468.1| signal recognition particle subunit Ffh SRP54 [Grimontia hollisae
           CIP 101886]
 gi|262222070|gb|EEY73382.1| signal recognition particle subunit Ffh SRP54 [Grimontia hollisae
           CIP 101886]
          Length = 454

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D ++E L ++   L+ +D+ + V +  V+++  K  A
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFVKKV--KESA 59

Query: 77  KDVSVQRVLYDVSELI---HKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGK 130
             + V + L    E I      L  +    N +    +  P V+L+ G+ G GKTT +GK
Sbjct: 60  VGLEVSKSLTPGQEFIKIVQSELEAVMGASNAELNLATQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A     DF  S        +A  A    
Sbjct: 120 LGKMLKERHKKKVLVVSADVYRPAAIKQLETLAGDVGIDFFPSTPDQKPVEIAKAALDHG 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFYDVVIVDTAGRLHIDEEMMDEIKDIHAAIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFNDALPLTGVVLTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|220909384|ref|YP_002484695.1| signal recognition particle protein [Cyanothece sp. PCC 7425]
 gi|219865995|gb|ACL46334.1| signal recognition particle protein [Cyanothece sp. PCC 7425]
          Length = 489

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 143/295 (48%), Gaps = 29/295 (9%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D IS   + + +RE +   L+ +D+ + V +  +EE+  K    +V           +++
Sbjct: 20  DKISETNIQEALRE-VRRALLEADVNLQVVKDFIEEVRVKALGAEVIAGIRPDQQFIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M     PL+     +    P ++L+ G+ G GKTT   KL+  +       
Sbjct: 79  YD--ELVQVMGETNAPLA-----EAETAPTIVLMAGLQGTGKTTAAAKLALHLRKQNRSA 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIID 200
           +L A D +R AAIDQL     +   D    ++G++     +A +  +  ++  VD +I+D
Sbjct: 132 LLVATDIYRPAAIDQLVTLGKQI--DVPVFQLGTEVNPVEIARQGVEHGRSLNVDTVIVD 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  +MA + ++   +      AP   L V+DA TGQ A      FH   G TG
Sbjct: 190 TAGRLQIDPEMMAELAQIKTTI------APQETLLVVDAMTGQEAANLTRTFHEQIGITG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I+TKMDG  RGG  + +      P+ F+GVGE +  L+PF     ++ + G  D
Sbjct: 244 AILTKMDGDTRGGAALSVRQISGQPIKFIGVGEKVEALQPFYPDRLASRVLGMGD 298


>gi|69248474|ref|ZP_00604748.1| Signal recognition particle protein [Enterococcus faecium DO]
 gi|257878620|ref|ZP_05658273.1| signal recognition particle protein [Enterococcus faecium
           1,230,933]
 gi|257883120|ref|ZP_05662773.1| signal recognition particle protein [Enterococcus faecium
           1,231,502]
 gi|257891867|ref|ZP_05671520.1| signal recognition particle protein [Enterococcus faecium
           1,231,410]
 gi|257894437|ref|ZP_05674090.1| signal recognition particle protein [Enterococcus faecium
           1,231,408]
 gi|258616855|ref|ZP_05714625.1| signal recognition particle protein [Enterococcus faecium DO]
 gi|260559333|ref|ZP_05831515.1| signal recognition particle protein [Enterococcus faecium C68]
 gi|261208009|ref|ZP_05922687.1| signal recognition particle protein [Enterococcus faecium TC 6]
 gi|289566895|ref|ZP_06447302.1| signal recognition particle protein [Enterococcus faecium D344SRF]
 gi|293556478|ref|ZP_06675052.1| signal recognition particle protein [Enterococcus faecium E1039]
 gi|293563841|ref|ZP_06678274.1| signal recognition particle protein [Enterococcus faecium E1162]
 gi|293567270|ref|ZP_06678624.1| signal recognition particle protein [Enterococcus faecium E1071]
 gi|294615586|ref|ZP_06695442.1| signal recognition particle protein [Enterococcus faecium E1636]
 gi|294619810|ref|ZP_06699200.1| signal recognition particle protein [Enterococcus faecium E1679]
 gi|314938080|ref|ZP_07845388.1| signal recognition particle protein [Enterococcus faecium
           TX0133a04]
 gi|314943602|ref|ZP_07850359.1| signal recognition particle protein [Enterococcus faecium TX0133C]
 gi|314949239|ref|ZP_07852588.1| signal recognition particle protein [Enterococcus faecium TX0082]
 gi|314952611|ref|ZP_07855603.1| signal recognition particle protein [Enterococcus faecium TX0133A]
 gi|314992459|ref|ZP_07857881.1| signal recognition particle protein [Enterococcus faecium TX0133B]
 gi|314997379|ref|ZP_07862334.1| signal recognition particle protein [Enterococcus faecium
           TX0133a01]
 gi|68194411|gb|EAN08916.1| Signal recognition particle protein [Enterococcus faecium DO]
 gi|257812848|gb|EEV41606.1| signal recognition particle protein [Enterococcus faecium
           1,230,933]
 gi|257818778|gb|EEV46106.1| signal recognition particle protein [Enterococcus faecium
           1,231,502]
 gi|257828227|gb|EEV54853.1| signal recognition particle protein [Enterococcus faecium
           1,231,410]
 gi|257830816|gb|EEV57423.1| signal recognition particle protein [Enterococcus faecium
           1,231,408]
 gi|260074693|gb|EEW63013.1| signal recognition particle protein [Enterococcus faecium C68]
 gi|260077767|gb|EEW65480.1| signal recognition particle protein [Enterococcus faecium TC 6]
 gi|289161301|gb|EFD09194.1| signal recognition particle protein [Enterococcus faecium D344SRF]
 gi|291590019|gb|EFF21813.1| signal recognition particle protein [Enterococcus faecium E1071]
 gi|291591529|gb|EFF23182.1| signal recognition particle protein [Enterococcus faecium E1636]
 gi|291593943|gb|EFF25427.1| signal recognition particle protein [Enterococcus faecium E1679]
 gi|291601357|gb|EFF31635.1| signal recognition particle protein [Enterococcus faecium E1039]
 gi|291604211|gb|EFF33712.1| signal recognition particle protein [Enterococcus faecium E1162]
 gi|313588547|gb|EFR67392.1| signal recognition particle protein [Enterococcus faecium
           TX0133a01]
 gi|313593001|gb|EFR71846.1| signal recognition particle protein [Enterococcus faecium TX0133B]
 gi|313595279|gb|EFR74124.1| signal recognition particle protein [Enterococcus faecium TX0133A]
 gi|313597720|gb|EFR76565.1| signal recognition particle protein [Enterococcus faecium TX0133C]
 gi|313642569|gb|EFS07149.1| signal recognition particle protein [Enterococcus faecium
           TX0133a04]
 gi|313644380|gb|EFS08960.1| signal recognition particle protein [Enterococcus faecium TX0082]
          Length = 472

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 119/208 (57%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++ G+ G GKTT  GKL+  +  +   + +L AGD +R AAIDQLK+   +   D 
Sbjct: 101 PTVIMMAGLQGAGKTTFTGKLANYLKKNENARPLLIAGDVYRPAAIDQLKVLGQQL--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              ++G++ +   +  +  + A+ KK D ++IDTAGRLH +  LM  + K I+ L +   
Sbjct: 159 PVFDMGTEVSPVEIVRQGMELAKEKKNDYVLIDTAGRLHIDETLMDEL-KQIKELTQ--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA TGQ+A+   + F+   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PNEILLVVDAMTGQDAVNVADSFNQQLGITGVVITKLDGDTRGGAALSIRSVTGAPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G GE + DLE F     ++ I G  D
Sbjct: 273 FIGSGEKLTDLEVFHPDRMASRILGMGD 300


>gi|331016301|gb|EGH96357.1| signal recognition particle protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 458

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGGGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH +  +M  I  +    K      P   L V+DA TGQ+A    
Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|254573270|ref|XP_002493744.1| Signal recognition particle (SRP) subunit (homolog of mammalian
           SRP54) [Pichia pastoris GS115]
 gi|238033543|emb|CAY71565.1| Signal recognition particle (SRP) subunit (homolog of mammalian
           SRP54) [Pichia pastoris GS115]
 gi|328354432|emb|CCA40829.1| Signal recognition particle subunit SRP54 [Pichia pastoris CBS
           7435]
          Length = 518

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 143/280 (51%), Gaps = 24/280 (8%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-------VQRVLYD-VSELIHKMLMP 98
           +E+ + L+ SD+ + +  ++ E++  +  A+D         +Q+V++D + +L+      
Sbjct: 33  KEICNALLESDVNIKLVAQLREKIRKQIDAEDKPGINKKKLIQKVVFDELVKLVDCNEAE 92

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           L KP       + +VI++VG+ G GKTT   KL+      G KV +  GDTFR+ A DQL
Sbjct: 93  LFKPK----KKQTNVIMMVGLQGAGKTTTCTKLAVYYQRRGFKVGMVCGDTFRAGAFDQL 148

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGI 215
           K  A +    +  S   +D   + ++  ++ + +K +++I+DT+GR      L   M  I
Sbjct: 149 KQNATKAKIPYYGSYTETDPVKVTFDGVEEFRKEKFEIIIVDTSGRHRQEEDLFEEMVQI 208

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
           GK I+         P+  + VLDA+ GQ+A  Q + F   +    +I+TKMD  ++GGG 
Sbjct: 209 GKAIK---------PNQTIMVLDASIGQSAESQSKAFKESSDFGAIIITKMDSNSKGGGA 259

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +  +     PV F+  GE I + E F  + F + + G  D
Sbjct: 260 LSAIAATNTPVAFIATGEHIQNFEKFSGRGFISKLLGIGD 299


>gi|53804558|ref|YP_113800.1| signal recognition particle protein [Methylococcus capsulatus str.
           Bath]
 gi|53758319|gb|AAU92610.1| signal recognition particle protein [Methylococcus capsulatus str.
           Bath]
          Length = 452

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 14/286 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSE 90
           ++   + D +RE +   L+ +D+ + V +  +E++  +   ++V       Q ++  V+E
Sbjct: 22  LTEANVQDALRE-VRQALLEADVALPVVKDFIEQVKERALGQEVQKSLTPGQAMIKIVNE 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   ++  N   +  P VIL+ G+ G GKTT + KL++ + +   K V++A+ D 
Sbjct: 81  ELVTIMGKANEKLNL-ATQPPAVILMAGLQGAGKTTTVAKLARWIKENLRKSVLVASADV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI QL+  A    A+F  S+       +A  A +  + + +DV+IIDTAGRLH + 
Sbjct: 140 YRPAAIQQLETLASEVKAEFFPSDASERPVDIARRAVEHGRKRYMDVVIIDTAGRLHIDE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +M  I  +   +K      P   L V+D+ TGQ+A    + FH     TG+I+TK DG 
Sbjct: 200 DMMDEIKAVHAAIK------PIETLFVVDSMTGQDAANTAKAFHDALPLTGVILTKTDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ARGG  + I      P+ F+GVGE    LE F     ++ I G  D
Sbjct: 254 ARGGAALSIRHITGKPIKFMGVGEKTAALEVFHPDRVASRILGMGD 299


>gi|299144003|ref|ZP_07037083.1| signal recognition particle protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518488|gb|EFI42227.1| signal recognition particle protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 445

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 159/307 (51%), Gaps = 23/307 (7%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F S S KL++ ++ +     +S + +D  +RE ++  L+ +D+   V +  ++ +  +  
Sbjct: 3   FESLSDKLQDTLSRLRGKGKLSEKDIDAAMRE-VKLALLEADVNFKVVKDFIKSVKERSL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E +  ++         D+S +P VI++ G+ G GKTT   K
Sbjct: 62  GSEVLESLTPGQQVIKIVNEELTSLMG--KGEAKIDYSKKPTVIMMCGLQGAGKTTTSAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--DAAALAYEAFKQ 188
           L+  M   G + +L A D +R AAI QL+I    +S D     +G   +   +A  A + 
Sbjct: 120 LANLMKKNGKRPLLVACDVYRPAAIKQLQIVG--SSVDVPVFSMGDKINPVDIAKAALEH 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGRLH +  LM        +L+  +   P  VL VLD+ TGQ+A+  
Sbjct: 178 AKKNGNDVVLLDTAGRLHIDESLME------ELLRMNEQTNPSEVLLVLDSMTGQDAVNV 231

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F  +   +G+I+TK+DG ARGG  + I     +P+ F+ +GE ++ +E F     ++
Sbjct: 232 ADSFDKLLKLSGVILTKLDGDARGGAALSIRAVTDVPIKFIAMGEKLDQIEVFHPDRMAS 291

Query: 309 VITGCLD 315
            I G  D
Sbjct: 292 RILGMGD 298


>gi|124026411|ref|YP_001015526.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. NATL1A]
 gi|123961479|gb|ABM76262.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. NATL1A]
          Length = 487

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 146/285 (51%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           IS   +D+ +++ +   L+ +D+ ++V ++ ++E+  K    +V       Q+ +  V E
Sbjct: 22  ISEENVDEALKQ-VRRALLDADVSLSVVKEFIDEVRVKAVGTEVVRGIDPGQKFIQVVHE 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  ++   + P   +   +P VIL+ G+ G GKTT   KL   + +   K +L A DT+
Sbjct: 81  ELVNVMGGENDPL-ANSEEQPTVILMAGLQGAGKTTATAKLGLLLKEKNKKPLLVAADTY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAIDQL     +   +            +A +  ++A+ +  D +++DTAGRL  ++ 
Sbjct: 140 RPAAIDQLVTLGKQIDVEVFNLSSNLKPEEIAKKGLEKAKKEGFDTVLVDTAGRLQIDTD 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M   G+M+R+ + + P     VL V+D+  GQ A      FH   G TG ++TK+DG +
Sbjct: 200 MM---GEMVRIKEAVQPD---EVLLVVDSMIGQEAADITRSFHEKVGITGAVLTKLDGDS 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 254 RGGAALSIRKISGKPIKFIGTGEKVEALQPFYPERMASRILGMGD 298


>gi|238921089|ref|YP_002934604.1| signal recognition particle protein [Edwardsiella ictaluri 93-146]
 gi|238870658|gb|ACR70369.1| signal recognition particle protein, putative [Edwardsiella
           ictaluri 93-146]
          Length = 453

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 154/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +D +++ L ++   L+ +D+ + V ++ +  +  K  A
Sbjct: 2   FENLSDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFISRV--KESA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFS---HRPHVILVVGVNGVGKTTVIGK 130
               V + L    E +  +   L++     N + +     P V+L+ G+ G GKTT +GK
Sbjct: 60  LGQEVNKSLTPGQEFVKIVQDELTRAMGEANTELNLAAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +   K V++ + D +R AAI QL+  A+    DF  S++      +   A   A
Sbjct: 120 LGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVQERPLDIVQRALTHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVLI+DTAGRLH +  +M  I ++   +      +P   L V+DA TGQ+A    
Sbjct: 180 KQKFYDVLIVDTAGRLHVDEAMMDEIKQIHAAI------SPVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ 
Sbjct: 234 SAFNQALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|148978164|ref|ZP_01814694.1| signal recognition particle GTPase [Vibrionales bacterium SWAT-3]
 gi|145962586|gb|EDK27862.1| signal recognition particle GTPase [Vibrionales bacterium SWAT-3]
          Length = 405

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V+ +  K  A
Sbjct: 2   FDNLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVKRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQAELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK +++   K V++ + D +R AAI QL+  A     DF  S        +A  A   
Sbjct: 119 KLSKLLTERDKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSSADQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVL++DTAGRL  +  +M  I ++   +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLLVDTAGRLAIDEEMMGEIQELHTAIN------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|11498230|ref|NP_069456.1| signal recognition particle protein Srp54 [Archaeoglobus fulgidus
           DSM 4304]
 gi|3334342|sp|O29633|SRP54_ARCFU RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|2650007|gb|AAB90619.1| signal recognition particle, subunit SRP54 (srp54) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 433

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 149/300 (49%), Gaps = 28/300 (9%)

Query: 28  LKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYAKDV---- 79
           LKE    I  S  +D    EE+    +  LI++D+ V   ++I + +  +  ++DV    
Sbjct: 6   LKEVARKIAGSSSIDKKFVEEMVKEIQRALIKADVNVRQVKEISDAIKKRALSEDVLPAL 65

Query: 80  ----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                + +++Y+  EL+  +   L  P       +   I++VG+ G GKTT   K++K  
Sbjct: 66  NAKEQILKIVYE--ELLRGVGEGLEIPL------KKAKIMLVGLQGSGKTTTTAKMAKYF 117

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
            D G+KV + A DT+R AA +QL+  A+     F   +   DA  +   A ++   K  D
Sbjct: 118 KDRGMKVAVVAADTWRPAAYEQLRQLAEEYGITFYGEKGEKDAVKIVKNALEKL--KDHD 175

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++IIDTAGR      L   I +MI++    +   P   L VLDA  GQ A +Q + FH  
Sbjct: 176 MIIIDTAGRHALEDEL---IDEMIKIA---EVARPDYKLLVLDAAIGQLASKQAQAFHEA 229

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+I+TK DGTA+GGG +       IP+ F+G GE + D E F    F + + G  D
Sbjct: 230 IGINGIIITKFDGTAKGGGALSAARQIGIPIAFIGTGEKVEDFERFDPAGFVSRLLGMGD 289


>gi|27573157|gb|AAO19978.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|36939131|gb|AAQ86944.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|36939151|gb|AAQ86948.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|37623910|gb|AAQ95587.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 311

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 116/196 (59%), Gaps = 2/196 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTAGDSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRL 205
           +A+ +D+++ DTAGRL
Sbjct: 295 KARGIDIVLADTAGRL 310


>gi|317011348|gb|ADU85095.1| signal recognition particle protein [Helicobacter pylori
           SouthAfrica7]
          Length = 448

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ T+  A  +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVETQTKANGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS      F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAQGGSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVLI
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVQEIANNALKRAKEAQFDVLI 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMKELKEVKAILN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|36939139|gb|AAQ86946.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 311

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 116/196 (59%), Gaps = 2/196 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMETTEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTAGDSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRL 205
           +A+ +D+++ DTAGRL
Sbjct: 295 KARGIDIVLADTAGRL 310


>gi|254796898|ref|YP_003081735.1| signal recognition particle protein [Neorickettsia risticii str.
           Illinois]
 gi|254590134|gb|ACT69496.1| signal recognition particle protein [Neorickettsia risticii str.
           Illinois]
          Length = 449

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 152/292 (52%), Gaps = 22/292 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDV-S 89
           +I+ +  DD VR+ L    + +D+ + V ++ +    E ++ K   K +S   V+  V  
Sbjct: 21  VITEKEFDDFVRK-LRLTFLEADVSLPVTKQFIANVKESVIGKSRVKGISTPAVIGSVVK 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLA 145
           E + K+L   S+ F +       + + VG+ GVGKTT   KL+    KK       ++L+
Sbjct: 80  EELVKILGGESQKFEFP-KFGKQIFMFVGLQGVGKTTTAAKLALLIRKKFKK---NILLS 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK--QAQAKKVDVLIIDTAG 203
           + D +R AA  QL+I A +   D V    G D  A+  +         +  DVLI+DTAG
Sbjct: 136 SVDIYRPAARKQLEILAKQIDVDSVPIVEGEDVDAIVKKTLDLFNNSNENYDVLIVDTAG 195

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R   +S+LM    + +RV+K  +   P  + QVLDA  GQ++L   + FH+  GTTG+I+
Sbjct: 196 RSQIDSVLM----EELRVIK--NCLQPSEIFQVLDAMMGQDSLNVAKTFHSEIGTTGVIV 249

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +++D  AR G ++ +  +  +P+ F G GE +NDLE F  +  +  I G  D
Sbjct: 250 SRLDSDARVGSVLSVRQSVGLPIRFCGAGERVNDLEEFHPERMAGRIMGAGD 301


>gi|255949096|ref|XP_002565315.1| Pc22g13910 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592332|emb|CAP98679.1| Pc22g13910 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 522

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 143/301 (47%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  LD    D + +E+   L+ +D+ V +   + + +        L   
Sbjct: 9   RINSAVNDLTRSNNLDEKAFDDMLKEICAALLSADVNVRLVGTLRKSIKASVNFASLPAA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  EL+ K++ P +  F      R +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKTVFD--ELV-KLVDPHADSFRPK-KGRSNVIMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ 
Sbjct: 125 YQTRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   F A
Sbjct: 185 DIIIVDTSGRHRQEEELFTEMTQIQTAV------TPDQTILVLDSTIGQAAEAQSAAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  + F   + G  
Sbjct: 239 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPRAFVQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|254169167|ref|ZP_04876003.1| SRP54-type protein, GTPase domain [Aciduliprofundum boonei T469]
 gi|197621902|gb|EDY34481.1| SRP54-type protein, GTPase domain [Aciduliprofundum boonei T469]
          Length = 366

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 158/313 (50%), Gaps = 33/313 (10%)

Query: 9   ESL-SWIRKLTK-GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           ESL + IRK++K G+   SL +KE + DI  +              L+R+D+ V +A K+
Sbjct: 7   ESLRNTIRKISKAGYVDESL-IKEVVRDIQRA--------------LLRADVEVHLALKL 51

Query: 67  VEEL----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            + +    L ++    +S +  L  +  +  +++  L K    + + +P  +++VG+ G 
Sbjct: 52  SKNVERRALEEKPPSGMSHRDFLIKI--IYEELVAILGK--EKEVALKPQKLMLVGLYGQ 107

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GKL++     GL V L A D  R AA +QLK   ++ +          DA  +A
Sbjct: 108 GKTTTAGKLARYFHKKGLSVALIACDVHRPAAYEQLKQIGEQLNVPVFGIPGEKDARKIA 167

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            EA K+   K   V I DT+GR      L+  I  +  +++      P  +  VLDAT G
Sbjct: 168 REAVKKM--KDYQVQIFDTSGRHALEDDLIEEIKDLKEIIQ------PDEIFLVLDATIG 219

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q A +Q + FH   G TG+I+TKMDG+A+GGG +  V     PV F+G GE + DLE F 
Sbjct: 220 QQAGKQAKAFHDAVGVTGVIITKMDGSAKGGGALSAVAATGAPVVFIGTGEHLEDLEHFN 279

Query: 303 AKDFSAVITGCLD 315
              F + + G  D
Sbjct: 280 PTRFISRLLGMGD 292


>gi|330964074|gb|EGH64334.1| signal recognition particle protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 458

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 151/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A      F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLATDIGVTFFASDISQKPVDIALAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH +  +M  I  +    K      P   L V+DA TGQ+A    
Sbjct: 180 RLKFIDVVIVDTAGRLHIDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|320329550|gb|EFW85539.1| signal recognition particle protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 458

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L+ D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +D++I+DTAGRLH +  +M  I  +    K      P   L V+DA TGQ+A    
Sbjct: 180 RLKFIDMVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|268316589|ref|YP_003290308.1| signal recognition particle protein [Rhodothermus marinus DSM 4252]
 gi|262334123|gb|ACY47920.1| signal recognition particle protein [Rhodothermus marinus DSM 4252]
          Length = 450

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 151/312 (48%), Gaps = 28/312 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+  +  +    R+ +    G   E+   L+ +D+   VA++  E +  K   
Sbjct: 2   FESLTEKLEAALKSVSGQGRITELNIAGTMREIRRALLEADVNYQVAREFTERVKEKALG 61

Query: 77  KDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTV 127
             V         + +++YD  EL+  +    S+  + + S  P  VILV G+ G GKTT 
Sbjct: 62  TKVLSSVSPGQQLVKIVYD--ELVRLLG---SEQVDINLSPTPPTVILVAGLQGSGKTTF 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE----IGSDAAALAY 183
             KL+      G   +LAA D +R AA++QLK  A   +      E    +  DA  +A 
Sbjct: 117 CAKLALYFKKKGRAPLLAAADVYRPAAVEQLKTLAASINVPVYSIEENGQVVQDAVRVAR 176

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA ++A+    D++IIDTAGRLH +  +M  + ++   ++      PH +L V+D+ TGQ
Sbjct: 177 EAVQEARRTARDIVIIDTAGRLHIDEAMMQEVEQIKEAVR------PHEILFVVDSMTGQ 230

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A+   + F+      G+++TK+DG  RGG  + I      P+ F   GE ++ L PF  
Sbjct: 231 DAVNTAKAFNERLDFDGVVLTKLDGDTRGGAALSIRSVVNKPIKFASTGEKLDALTPFYP 290

Query: 304 KDFSAVITGCLD 315
              +  I G  D
Sbjct: 291 DRMAQRILGMGD 302


>gi|150401682|ref|YP_001325448.1| signal recognition particle protein Srp54 [Methanococcus aeolicus
           Nankai-3]
 gi|166222333|sp|A6UWG4|SRP54_META3 RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|150014385|gb|ABR56836.1| GTP-binding signal recognition particle SRP54 G- domain
           [Methanococcus aeolicus Nankai-3]
          Length = 450

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 147/287 (51%), Gaps = 22/287 (7%)

Query: 39  RRLDDGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           ++L   V ++++  LI++D+ V         + +K + E   K  +K   + +++YD  E
Sbjct: 24  KKLVKEVIKDIQKALIQADVNVKLVFAMSKEIERKAIYESAPKGLSKKDHIIKIVYD--E 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L+ K+L    +    D  ++ ++IL+VG+ G GKTT   KL++ +   G K  L A D +
Sbjct: 82  LV-KLLGEEGQKLELDPKNK-NIILLVGIQGSGKTTSAAKLARTLQKRGFKPALIAADVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAA-ALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           R AA  QLK  +++           +     +  E  KQ   KK DV+IIDTAGR    S
Sbjct: 140 RPAAYQQLKQLSEKIHIPLHGDPTKTKTPMEITEEGLKQF--KKNDVIIIDTAGRHKEES 197

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMDG 268
            L+  + +M       +   P  ++ V+D T GQ A  Q + F  AV     +++TKMDG
Sbjct: 198 GLLEEMKEM------KEKFNPEEIILVIDGTLGQQAKNQAKAFKDAVENIGSILITKMDG 251

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +A+GGG +  V     P+ F+G GE ++DLEPF  K F + + G  D
Sbjct: 252 SAKGGGALSAVAEIGAPIKFIGTGEKVDDLEPFDPKKFISRLLGMGD 298


>gi|330872812|gb|EGH06961.1| signal recognition particle protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 458

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 151/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A      F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLATDIGVTFFASDISQKPVDIALAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH +  +M  I  +    K      P   L V+DA TGQ+A    
Sbjct: 180 RLKFIDVVIVDTAGRLHIDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|284007749|emb|CBA73571.1| signal recognition particle protein [Arsenophonus nasoniae]
          Length = 453

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D ++E L ++   L+ +D+ + V ++ ++ +      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVREFIQSVKESAVG 61

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS------HRPHVILVVGVNGVGKTTVIGK 130
           +DV+  + L    E +  +   L+K    + S        P VIL+ G+ G GKTT + K
Sbjct: 62  QDVN--KSLTPGQEFVKIVQNELTKAMGEENSALNLAIQPPAVILMAGLQGAGKTTTVAK 119

Query: 131 LSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +   K +L  + D +R AAI QL+        DF  S        +A  A + A
Sbjct: 120 LGKLLKEKQKKKVLVVSADIYRPAAIKQLETLTQTVGIDFFPSTSSEKPVEIATNALQHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVLIIDTAGRLH +  +M  I  + R +       P   L ++DA TGQ+A    
Sbjct: 180 KLKFYDVLIIDTAGRLHVDEAMMEEIQAIHRAIN------PIETLFIVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG ARGG  + I      P+ FLG+GE I  LEPF     ++ 
Sbjct: 234 KSFNETLPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGIGEKIEGLEPFYPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|298735845|ref|YP_003728370.1| signal recognition particle, subunit SRP54 [Helicobacter pylori B8]
 gi|298355034|emb|CBI65906.1| signal recognition particle, subunit SRP54 [Helicobacter pylori B8]
          Length = 448

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 154/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++  A  +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKASGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSTKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVLI
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLI 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|209879780|ref|XP_002141330.1| signal recognition particle protein SRP54 [Cryptosporidium muris
           RN66]
 gi|209556936|gb|EEA06981.1| signal recognition particle protein SRP54, putative
           [Cryptosporidium muris RN66]
          Length = 497

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 144/286 (50%), Gaps = 13/286 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDVSVQRVLYDVS-- 89
           I+    +D+ +RE +   L+++D+ V +  ++   +++ ++ +    V+ +R L   S  
Sbjct: 22  IVDEATIDNCLRE-IATALLQADVNVKLVAQLRNNIKKAISSQGNLQVASKRRLIQASVV 80

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           E + K+L P  KP+      + ++++ VG+ G GKTT   K +      G K  L   DT
Sbjct: 81  EELVKILTPQRKPY-VPTKDKCNIVVFVGLQGSGKTTTCTKYAHYYQRKGWKTALVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQLK  A +    F  S   +D   +A +  K+ +    D++I+DT+GR    S
Sbjct: 140 FRAGAFDQLKQNATKAKIPFYGSYTETDPVKIASDGVKEFRDDNYDLIIVDTSGRHKQES 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L   + +++   K      P +V+ V+D+  GQ    Q   F +V     +I+TK+DG 
Sbjct: 200 SLFVEMQQIVLSTK------PDNVVFVMDSHIGQACYDQALAFCSVIDVGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V     P+ F+G GE  +D EPF  + F + + G  D
Sbjct: 254 AKGGGALSAVAATSAPIIFIGTGEHFDDFEPFETRGFVSRLLGLGD 299


>gi|36939135|gb|AAQ86945.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|36939145|gb|AAQ86947.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 311

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 116/196 (59%), Gaps = 2/196 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTAGDSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRL 205
           +A+ +D+++ DTAGRL
Sbjct: 295 KARGIDIVLADTAGRL 310


>gi|237737651|ref|ZP_04568132.1| signal recognition particle protein [Fusobacterium mortiferum ATCC
           9817]
 gi|229419531|gb|EEO34578.1| signal recognition particle protein [Fusobacterium mortiferum ATCC
           9817]
          Length = 449

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 109/207 (52%), Gaps = 6/207 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P V+++ G+ G GKTT   KL   +   G KV++   D +R AAI QL++  ++T  +
Sbjct: 98  RNPTVLMLAGLQGAGKTTFAAKLGNYLKKQGEKVLMVGADVYRPAAIKQLQVLGEQTGIE 157

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E   DA  +      +A+      +IIDTAGRLH +  LM  + K I+ L R    
Sbjct: 158 VYSEENHQDAVGICERGLAKAKELGSTYMIIDTAGRLHIDEKLMDEL-KEIKRLTR---- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +L V+DA  GQ+A+   E F+ V    G+++TK+DG  RGG  + I      P+ F
Sbjct: 213 -PQEILLVVDAMIGQDAVNLAESFNNVLNIDGVVLTKLDGDTRGGAALSIKAVVGKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE I+D+E F  +   + I G  D
Sbjct: 272 VGVGEKIDDIELFHPERLVSRILGMGD 298


>gi|78185084|ref|YP_377519.1| Signal recognition particle protein [Synechococcus sp. CC9902]
 gi|78169378|gb|ABB26475.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Synechococcus sp. CC9902]
          Length = 492

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 143/280 (51%), Gaps = 16/280 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100
           DG  +E+   L+ +D+ + V +  V E+  K    +V V+ V  D    +++H  L+ + 
Sbjct: 28  DGALKEVRRALLEADVSLPVVKDFVSEVRGKAVGAEV-VRGVSPDQKFIQVVHDQLVDVM 86

Query: 101 KPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              N      S  P V+L+ G+ G GKTT   KL   + D G + ++   D +R AAI+Q
Sbjct: 87  GGDNAPLARASEAPTVVLMAGLQGAGKTTATAKLGLHLKDQGRRSLMVGADVYRPAAIEQ 146

Query: 158 LKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           LK    +   D     +G+DA    +A     +A+A+  D L++DTAGRL  ++ +M   
Sbjct: 147 LKTLGGQIGVDVFS--LGTDAKPEEIAAAGLAKAKAEGYDTLLVDTAGRLQIDTEMM--- 201

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
           G+M+R+   +    P  VL V+D+  GQ A      FH   G TG ++TK+DG +RGG  
Sbjct: 202 GEMVRIRSAVQ---PDEVLLVVDSMIGQEAAELTRAFHEQVGITGAVLTKLDGDSRGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 259 LSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298


>gi|88855269|ref|ZP_01129934.1| signal recognition particle, subunit SRP54 [marine actinobacterium
           PHSC20C1]
 gi|88815797|gb|EAR25654.1| signal recognition particle, subunit SRP54 [marine actinobacterium
           PHSC20C1]
          Length = 524

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 149/284 (52%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           DG   E+   L+ +D+ + V ++    +  +    +VS      Q+V+  V++ +  +L 
Sbjct: 32  DGTVREIRRALLDADVALEVVKEFTGRVRERALGHEVSQALNPAQQVVQIVNDELVTILG 91

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +   + P VI++ G+ G GKTT+ GKLSK ++  G   +L A D  R  A+ Q
Sbjct: 92  GEARRIEF-AKNPPTVIMLAGLQGAGKTTLAGKLSKWLAADGHTPLLVAADLQRPNAVTQ 150

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++ A++        E G+   D   +A +A K A+ K+ DV+IIDTAGRL  ++ LM  
Sbjct: 151 LQVVAEQAGVAVFAPEPGNGKGDPVKVAKQALKFAKDKQHDVVIIDTAGRLGVDAELMK- 209

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
             +   + K +DP     VL V+DA  GQ+A++    F      TG++++K+DG ARGG 
Sbjct: 210 --QAANIRKAVDPD---EVLFVIDAMIGQDAVKTARAFQEGVDFTGVVLSKLDGDARGGA 264

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + +      P+ F   GEG++D EPF     ++ I   LD G+
Sbjct: 265 ALSVASITGRPIMFASTGEGLDDFEPFHPDRMASRI---LDLGD 305


>gi|325119667|emb|CBZ55220.1| Signal recognition particle GTPase, related [Neospora caninum
           Liverpool]
          Length = 583

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 127/250 (50%), Gaps = 10/250 (4%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           GV   +   +E+ T+  A  V+ ++++    +SE++  ML P  +P+        +VI+ 
Sbjct: 122 GVGANKDTFQEINTRAAAVGVNSRKIIQKCVISEIV-AMLTPARQPY-VPRKGATNVIMF 179

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VG+ G GKTT   K +      G +V L   DTFR+ A DQLK  A +    F  S   +
Sbjct: 180 VGLQGSGKTTTCTKFAHYYQRKGWRVALVCADTFRAGAFDQLKQNATKVRIPFYGSYTEA 239

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D   +A E  +Q + +K D++I+DT+GR    + L     +M +V + +D   P  V+ V
Sbjct: 240 DPVKIAEEGVEQFRKEKYDMIIVDTSGRHKQEAAL---FDEMKQVAEAVD---PDDVVFV 293

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +D+  GQ    Q + F        +I+TK+DG A+GGG +  V     P+ FLG GE  +
Sbjct: 294 MDSHIGQACFEQAQAFSESVDVGSVIITKLDGHAKGGGALSAVAATGAPIIFLGSGEHFD 353

Query: 297 DLEPFVAKDF 306
           D E F A  F
Sbjct: 354 DFEAFEANSF 363


>gi|317052717|ref|YP_004113833.1| signal recognition particle protein [Desulfurispirillum indicum S5]
 gi|316947801|gb|ADU67277.1| signal recognition particle protein [Desulfurispirillum indicum S5]
          Length = 462

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 6/208 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V+++ G+ G GKTT  GKL+      G KVMLA  D +R AA++Q++  A++   
Sbjct: 97  STPPTVVMMCGLQGSGKTTTAGKLAASFKKQGRKVMLAGADIYRPAAVEQIRALAEQVGV 156

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           D            +  +A K A  K++D+LI+DTAGRLH +  LM  + + I+   R   
Sbjct: 157 DVYAPGTDISPVEICAQARKLAMGKQIDLLILDTAGRLHIDDALMEELVQ-IKASAR--- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V DA TGQ A+   + F      +G+I+TKMD  ARGG  + I      P+ 
Sbjct: 213 --PDEILFVADAMTGQEAVNVAQSFDERLDLSGVILTKMDSDARGGAALSIRALLGKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++G GE ++ LEPF     ++ I G  D
Sbjct: 271 YIGGGEKMDALEPFHPDRVASRILGMGD 298


>gi|237801083|ref|ZP_04589544.1| signal recognition particle protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023940|gb|EGI03997.1| signal recognition particle protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 361

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 112/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL++ + +   K VM+ + D +R AAI QL+  A+     F
Sbjct: 3   PAVILMAGLQGAGKTTTAGKLARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTF 62

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+I      +A  A K+A+ K +DV+I+DTAGRLH +  +M  I  +    K      
Sbjct: 63  FASDISQKPVEIAQAAIKEAKLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------ 116

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA TGQ+A    + F      TG+I+TK+DG ARGG  + +      P+ F+
Sbjct: 117 PAETLFVVDAMTGQDAANTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFI 176

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+GE    LEPF     ++ I G  D
Sbjct: 177 GMGEKSEALEPFHPDRIASRILGMGD 202


>gi|72382692|ref|YP_292047.1| signal recognition particle protein [Prochlorococcus marinus str.
           NATL2A]
 gi|72002542|gb|AAZ58344.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Prochlorococcus marinus str. NATL2A]
          Length = 487

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 146/285 (51%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           IS   +D+ +++ +   L+ +D+ ++V ++ ++E+  K    +V       Q+ +  V E
Sbjct: 22  ISEENVDEALKQ-VRRALLDADVSLSVVKEFIDEVRVKAVGTEVVRGIDPGQKFIQVVHE 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  ++   + P   +   +P VIL+ G+ G GKTT   KL   + +   K +L A DT+
Sbjct: 81  ELVNVMGGENDPL-ANSEEQPTVILMAGLQGAGKTTATAKLGLLLKEKNKKPLLVAADTY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAIDQL     +   +            +A +  ++A+ +  D +++DTAGRL  ++ 
Sbjct: 140 RPAAIDQLVTLGKQIDVEVFNLSSNLKPEEIAKKGLEKAKNEGFDTVLVDTAGRLQIDTD 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M   G+M+R+ + + P     VL V+D+  GQ A      FH   G TG ++TK+DG +
Sbjct: 200 MM---GEMVRIKEAVQPD---EVLLVVDSMIGQEAADITRSFHEKVGITGAVLTKLDGDS 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 254 RGGAALSIRKISGKPIKFIGTGEKVEALQPFYPERMASRILGMGD 298


>gi|85712459|ref|ZP_01043508.1| Signal recognition particle GTPase [Idiomarina baltica OS145]
 gi|85693737|gb|EAQ31686.1| Signal recognition particle GTPase [Idiomarina baltica OS145]
          Length = 454

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 155/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + +  I    RL +D ++  L ++   L+ +D+ + V +    K+ E  + 
Sbjct: 2   FENLSERLTQTLRSIGGKGRLTEDNIKSTLREVRMALLEADVALPVVKEFIGKVKERAVG 61

Query: 73  KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
               K ++  +V   +  SEL    +   + P +   +  P VIL+ G+ G GKTT +GK
Sbjct: 62  TEVNKSLTPGQVFVKIVQSEL-EAAMGEANVPLDLS-TQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K + +    KVM+ + D +R AAI QL+  A++    F  S        +A  A  +A
Sbjct: 120 LAKYLKERQKKKVMVVSADIYRPAAIKQLETLAEQVDVSFFPSTTAQSPVEIAQGAIAEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + VDV+++DTAGRL  +  +M  I  +   +K      P   L V+D+ TGQ+A    
Sbjct: 180 KKQFVDVVLVDTAGRLTIDEDMMQEIQHLHTEIK------PVETLFVVDSMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFNEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|269140194|ref|YP_003296895.1| signal recognition particle protein [Edwardsiella tarda EIB202]
 gi|267985855|gb|ACY85684.1| signal recognition particle protein [Edwardsiella tarda EIB202]
 gi|304560025|gb|ADM42689.1| Signal recognition particle, subunit Ffh SRP54 [Edwardsiella tarda
           FL6-60]
          Length = 453

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 153/309 (49%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +D +++ L ++   L+ +D+ + V ++ +  +  K  A
Sbjct: 2   FENLSDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFISRV--KESA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFS---HRPHVILVVGVNGVGKTTVIGK 130
               V + L    E +  +   L++     N + +     P V+L+ G+ G GKTT +GK
Sbjct: 60  LGQEVNKSLTPGQEFVKIVQDELTRAMGEANTELNLAAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +   K V++ + D +R AAI QL+  A     DF  S++      +   A   A
Sbjct: 120 LGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVGVDFFPSDVQERPLDIVQRALTHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K  DVLI+DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A 
Sbjct: 180 KQKFYDVLIVDTAGRLHVDEAMMDEIKQI---------HAAINPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     
Sbjct: 231 NTASAFNQALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRV 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|149915436|ref|ZP_01903963.1| signal recognition particle protein [Roseobacter sp. AzwK-3b]
 gi|149810725|gb|EDM70566.1| signal recognition particle protein [Roseobacter sp. AzwK-3b]
          Length = 507

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 147/283 (51%), Gaps = 15/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           DD V+  L ++   L+ +D+ + VA+  ++++  +   + V+      Q+V+  V + + 
Sbjct: 24  DDDVKTALREVRVALLEADVSLPVARDFIKKVQDQATGQAVTRSVTPGQQVVKIVHDALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRS 152
           + L    +P      + P  IL+VG+ G GKTT   KL+K++ D  G +V++A+ D  R 
Sbjct: 84  ETLTGEGEPGALKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKDRDGKRVLMASLDVNRP 143

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA++QL+I   +   D +    G D   +A  A  QA     DV ++DTAGRLH ++ L+
Sbjct: 144 AAMEQLEILGRQIGVDTLPIVKGEDPVTIAKRAKTQASLGGYDVYLLDTAGRLHIDADLI 203

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
           A    +       D   P   L V+D  TGQ+A+   E F    G +G+++T+MDG  RG
Sbjct: 204 AQAAAV------RDVANPRETLLVVDGLTGQDAVNVAEEFDDKIGVSGVVLTRMDGDGRG 257

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F+G+GE ++ LE F  +  +  I G  D
Sbjct: 258 GAALSMRAVTGKPIKFVGLGEKMDALETFEPERIAGRILGMGD 300


>gi|300772045|ref|ZP_07081915.1| signal recognition particle protein [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760348|gb|EFK57174.1| signal recognition particle protein [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 445

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 113/212 (53%), Gaps = 7/212 (3%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD 163
            D S  P VIL+ G+NG GKTT  GKL+  + D  G K +L AGD +R AAIDQL++   
Sbjct: 93  LDTSKNPTVILIAGLNGAGKTTFSGKLANYLKDKKGKKPLLVAGDVYRPAAIDQLEVLGG 152

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +       +   +D  A++    ++A+    +V+IIDTAGRL  +  LM  I  +    K
Sbjct: 153 QVGVPVFVNRESNDPIAISQAGVEEAKRNGHNVVIIDTAGRLAIDEALMVEITAVKEATK 212

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I     
Sbjct: 213 ------PQEILFVVDSMTGQDAVNTAKAFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVN 266

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+G GE +  L+ F     ++ I G  D
Sbjct: 267 KPIKFIGTGEKMEALDVFYPDRMASRILGMGD 298


>gi|86607761|ref|YP_476523.1| signal recognition particle protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556303|gb|ABD01260.1| signal recognition particle protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 487

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 146/288 (50%), Gaps = 16/288 (5%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDV 88
           D I+   + + +RE +   L+ +D+ + V ++ +E++       +V +     Q+ +  V
Sbjct: 20  DKITETNIQEALRE-VRRALLDADVNLQVVKQFIEDVREAALGSEVILGVTPDQQFIKIV 78

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            + + K++   + P        P ++L+ G+ G GKTT   KL+  +   G K ++ AGD
Sbjct: 79  HDELVKVMGEANVPIA-QAEQPPTIVLMAGLQGSGKTTTCAKLALYLRKQGKKSLMVAGD 137

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
            +R AAIDQLK    +        ++G +D   +A +  + A+ +  D +I+DTAGRL  
Sbjct: 138 IYRPAAIDQLKTLGQQIQ--IPVFDLGKADPVEIARQGVETARQQGYDYVILDTAGRLQI 195

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  +MA + ++   ++      PH +L V+DA  GQ A      FH   G TG I+TK+D
Sbjct: 196 DLEMMAELERIKAAVQ------PHEILLVVDAMIGQEAASLTRAFHERLGITGAILTKLD 249

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  RGG  + I      P+ F+GVGE +  L+PF     ++ I G  D
Sbjct: 250 GDTRGGAALSIRQVSGQPIKFIGVGEKVEALDPFYPDRMASRILGMGD 297


>gi|71015804|ref|XP_758844.1| hypothetical protein UM02697.1 [Ustilago maydis 521]
 gi|46098350|gb|EAK83583.1| hypothetical protein UM02697.1 [Ustilago maydis 521]
          Length = 638

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 110/217 (50%), Gaps = 14/217 (6%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A + +  F
Sbjct: 127 KPNVIMFVGLQGSGKTTSCTKLALYYQKRGFKTGLVCADTFRAGAFDQLKQNASKINVPF 186

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH- 228
             S   +D  A++       +  + +V+I+DT+GR            ++   ++ +D   
Sbjct: 187 YGSYTETDPVAISAAGVASFKQNRFEVIIVDTSGRHKQEQ-------ELFDEMREIDTAV 239

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   + VLDA  GQ A  Q   F   AG   +I+TK+DG A+GGG I  V   K P+ F
Sbjct: 240 TPDLTIMVLDANIGQAAEAQSRAFKQAAGYGAIIVTKLDGHAKGGGAISAVAATKTPIMF 299

Query: 289 LGVGEGINDLEPFVAKDFSAV------ITGCLDYGEE 319
           +G GE   DLEPF A+ F +       I+G +D  EE
Sbjct: 300 IGTGEHAADLEPFRAQPFISKLLGMGDISGLMDKMEE 336


>gi|126738051|ref|ZP_01753772.1| signal recognition particle protein [Roseobacter sp. SK209-2-6]
 gi|126720548|gb|EBA17253.1| signal recognition particle protein [Roseobacter sp. SK209-2-6]
          Length = 509

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 142/269 (52%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVA----QKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA    +K+ E+   +   K V+  Q+V+  V + + ++L           
Sbjct: 38  LLEADVSLPVARDFVKKVQEQATGQAVTKSVTPGQQVVKIVHDALVEVLRGDEDLGTLKV 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT  GKL+K++ +  G +V++A+ D +R AA+DQLK+   +  
Sbjct: 98  DNPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKRVLMASLDVYRPAAMDQLKVLGTQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G     +A  A +QA     DV ++DTAGRLH +  LM  +  +  V+    
Sbjct: 158 VDTLPIVPGQKPVDIAKRAKQQATLGGYDVYMLDTAGRLHIDETLMQEVEDVRNVV---- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             +P   L V+D  TGQ A+   E F A  G +G+++T+MDG  RGG  + +      P+
Sbjct: 214 --SPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ +E F  +  +  I G  D
Sbjct: 272 RFVGLGEKMDAIETFEPERIAGRILGMGD 300


>gi|86605764|ref|YP_474527.1| signal recognition particle protein [Synechococcus sp. JA-3-3Ab]
 gi|86554306|gb|ABC99264.1| signal recognition particle protein [Synechococcus sp. JA-3-3Ab]
          Length = 483

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 148/288 (51%), Gaps = 16/288 (5%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDV 88
           D I+   + + +RE +   L+ +D+ + V ++ +E++       +V +     Q+ +  V
Sbjct: 20  DKITETNIQEALRE-VRRALLDADVNLQVVKQFIEDVRQAALGAEVILGVTPDQQFIKIV 78

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            + + K++   + P        P ++++VG+ G GKTT   KL+  +   G + +L AGD
Sbjct: 79  HDELVKVMGEANVPIA-QAEQPPTIVVMVGLQGSGKTTTCAKLALYLRKQGKRPLLVAGD 137

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
            +R AAIDQLK    +        ++G +D   +A +    A+ +  D +I+DTAGRL  
Sbjct: 138 IYRPAAIDQLKTLGQQIQ--IPVFDLGKTDPVEIARQGVAAAREQGYDYVILDTAGRLQI 195

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  +MA + ++   ++      PH +L V+DA  GQ A    + FH   G TG I+TK+D
Sbjct: 196 DLEMMAELERIKAAVQ------PHEILLVVDAMIGQEAANLTQAFHERLGLTGTILTKLD 249

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +RGG  + I      P+ F+GVGE +  L+PF     ++ I G  D
Sbjct: 250 GDSRGGAALSIRQVSGQPIKFVGVGEKVEALDPFYPDRMASRILGMGD 297


>gi|225374445|ref|ZP_03751666.1| hypothetical protein ROSEINA2194_00060 [Roseburia inulinivorans DSM
           16841]
 gi|225213683|gb|EEG96037.1| hypothetical protein ROSEINA2194_00060 [Roseburia inulinivorans DSM
           16841]
          Length = 450

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 155/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++ S  RL +D V+  L+++   L+ +D+   V ++ V+++  +   
Sbjct: 3   FDSLSEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKQFVKDVQERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +            VI++ G+ G GKTT   KL
Sbjct: 63  QDVMNGLNPGQMVIKIVNEEMVKLMGSETTEIKLQPGKALTVIMMEGLQGAGKTTTAAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G KV+L A D +R  AI+QL+I  ++   +            +A  A + A  
Sbjct: 123 AGKFKLKGKKVLLTACDIYRPGAIEQLQINGEKQGVEVFSMGDKIKPVNIAKAAIEHAAK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            + +++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+   +M
Sbjct: 183 NEFNIVILDTAGRLHIDDDMMAELQEIKENV------TVHQTVLVVDAMTGQDAVNVAKM 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FDEKVGIDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|295111654|emb|CBL28404.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Synergistetes bacterium SGP1]
          Length = 447

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 140/282 (49%), Gaps = 21/282 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIHK 94
           D    E+   L+ +D+   VA+ +V  +  +    DV         +  V+Y+  EL+  
Sbjct: 28  DAALREIRKSLLEADVDFKVARSLVARIRERALQLDVIESISAAQHIATVVYE--ELVSL 85

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           M  P   P     S  P VIL+VG+ G GKTT   KL++++  +    ++ A D  R AA
Sbjct: 86  MGDP--APLAI-ASMPPTVILMVGLQGSGKTTTTVKLARRLQGSH-NPLVVACDLRRPAA 141

Query: 155 IDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           +DQL++ A+     F   + G +D   +   A ++A  +  DV+++DTAGRLH +  LM 
Sbjct: 142 VDQLRVLAEEARVAFYGPDAGGTDVLEVVRGARQRAADRMNDVILLDTAGRLHLDQELME 201

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            +  +   L       PH  L VLDA  GQ A+     FH     TGLI+TK+DG ARGG
Sbjct: 202 ELSAIASALP------PHEKLLVLDAMMGQEAVNVARAFHERLALTGLILTKLDGDARGG 255

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + +     +PV F GVGE  + LE F ++  +  I G  D
Sbjct: 256 SALAVRAVTDVPVKFAGVGERTDALEVFDSRRMAGRIMGMGD 297


>gi|254443810|ref|ZP_05057286.1| signal recognition particle protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198258118|gb|EDY82426.1| signal recognition particle protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 471

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 154/304 (50%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL   + ++  + +L ++ + E L+++   L+ +D+   VA+  +E +  K   
Sbjct: 2   FESLTDKLTNAMRNLRGTAKLSEENMAEALKEVRAALLSADVHFKVAKTFIERVKEKCVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+++  +++ +  +L   S   +     +P  I++VG+ G GKTT   KL
Sbjct: 62  QDVLKTVTPGQQIIKIINDELTALLGEGSTELS---KKKPLKIMMVGLQGGGKTTTTAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G K  L A D +R AAIDQL+  A +            D  A+  E  ++A A
Sbjct: 119 AKSLKKDGYKPRLVACDVYRPAAIDQLETVARQIDVPCFAKRGTPDVPAIGEEGLREALA 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I DTAGRL  +  L+  I ++ R ++      P  VL V+D   GQ A+   + 
Sbjct: 179 VGDDLIIFDTAGRLQIDDALIEEIKELKRRVQ------PDEVLLVVDGAIGQEAVNVAKT 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG++MTK+DG ARGG  + +    ++P+ F G GE ++D + F     ++ I 
Sbjct: 233 FNEAVQLTGIVMTKLDGDARGGAALSMKEITEVPIKFAGTGEKLDDFDVFYPDRMASRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|261408023|ref|YP_003244264.1| signal recognition particle protein [Paenibacillus sp. Y412MC10]
 gi|261284486|gb|ACX66457.1| signal recognition particle protein [Paenibacillus sp. Y412MC10]
          Length = 460

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 135/267 (50%), Gaps = 10/267 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L+ +D+   V +  V ++  K   K+V    +   V+ D+       LM  S+      +
Sbjct: 39  LLEADVNFKVVKDFVSKVKEKAIGKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKSN 98

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P VI++ G+ G GKTT  GKL+K +     K +L AGD +R AAI QL++  ++ +  
Sbjct: 99  KPPTVIMMAGLQGAGKTTTSGKLAKLLQKQNSKPLLVAGDIYRPAAIKQLEVLGNQINVP 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                  +    +A +  + A+    D +IIDTAGRLH +  LM  + ++  V+      
Sbjct: 159 VFSLGDKTSPVEIAKQGLQHAKDNGHDYVIIDTAGRLHVDEELMEELKQIHSVVN----- 213

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  VL V+DA TGQ+A+   E F+     TG+++TK+DG  RGG  + +      P+ F
Sbjct: 214 -PDEVLLVVDAMTGQDAVNVAESFNQQLTLTGVVLTKLDGDTRGGAALSVKAVTGCPIKF 272

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
             +GE I+ LEPF  +  ++ I G  D
Sbjct: 273 AALGEKIDALEPFHPERMASRILGMGD 299


>gi|167769126|ref|ZP_02441179.1| hypothetical protein ANACOL_00449 [Anaerotruncus colihominis DSM
           17241]
 gi|167668766|gb|EDS12896.1| hypothetical protein ANACOL_00449 [Anaerotruncus colihominis DSM
           17241]
          Length = 459

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 148/295 (50%), Gaps = 24/295 (8%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SV 81
           KLKE  +DI  + R       E+   L+ +D+   VA+  V  +  K    +V       
Sbjct: 22  KLKE--SDIKEAMR-------EVRLALLEADVNYKVAKDFVAAVTEKAVGDEVLESLTPA 72

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           Q V+  V++ +  ++       N+  S  P ++++ G+ G GKTT   KL+    + G +
Sbjct: 73  QMVVKIVNDELTNLMGETGARLNFS-SRPPTIVMMCGLQGSGKTTHSAKLALHFREQGKR 131

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIID 200
            +L A D +R AAI+QLK+  ++  A     ++G  D   +A  A   A+    D++I+D
Sbjct: 132 PLLVACDVYRPAAIEQLKVVGEK--AGVPVFDMGQGDPVEIARRAVMHAKDHGNDLVILD 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRLH +  LM  + K IR     D  +P  +L V+DA  GQ+A+     F    G +G
Sbjct: 190 TAGRLHIDEALMDEL-KRIR-----DEVSPQEILLVVDAMVGQDAVNVASAFDEALGISG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG  RGG  + +      PV F+G GE + DLEPF     ++ I G  D
Sbjct: 244 VILTKLDGDTRGGAALSVRAVTGKPVKFVGTGEKLGDLEPFYPDRMASRILGMGD 298


>gi|221134436|ref|ZP_03560741.1| signal recognition particle protein [Glaciecola sp. HTCC2999]
          Length = 404

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 119/212 (56%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+++ G+ G GKTT +GKL+K +S+    KV++ + D +R AAI+QLK  A+   
Sbjct: 10  AQPPAVVMMAGLQGAGKTTSVGKLAKLLSEREKKKVLVVSADVYRPAAIEQLKTLANDVG 69

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            +F  S I      +  +A   A+ + VDVL++DTAGRL       A  G+M+  +K L 
Sbjct: 70  VEFFPSNIMQKPIDIVNDAIAHAKKQFVDVLLVDTAGRL-------AIDGEMMNEIKAL- 121

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F      TG+I+TK DG ARGG  + +     
Sbjct: 122 -HAAVKPVETLFVVDAMTGQDAANTAKAFDETLPLTGVILTKADGDARGGAALSVRHITG 180

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+G+GE ++ LEPF  +  ++ I G  D
Sbjct: 181 KPIKFIGMGEKLDALEPFHPERMASRILGMGD 212


>gi|90414888|ref|ZP_01222853.1| putative signal recognition particle protein [Photobacterium
           profundum 3TCK]
 gi|90324002|gb|EAS40596.1| putative signal recognition particle protein [Photobacterium
           profundum 3TCK]
          Length = 455

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL DD +++ L ++   L+ +D+ + V ++ V+ +  +   
Sbjct: 2   FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  +      P VIL+ G+ G GKTT +GKL
Sbjct: 62  SEVSKSLTPGQEFIKIVQAELESVMGESNEALDL-ACQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K V++ + D +R AAI QL+  A+    DF  S        +   A    +
Sbjct: 121 GKVLKEREKKNVLVVSADVYRPAAIKQLETLANDIGIDFFPSSAEQKPVDIVSAAVAHGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRLH + ++M  I  + +         P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVVIVDTAGRLHVDDVMMDEIKDIHKAAN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPNRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|329919858|ref|ZP_08276796.1| signal recognition particle protein [Lactobacillus iners SPIN
           1401G]
 gi|328936948|gb|EGG33378.1| signal recognition particle protein [Lactobacillus iners SPIN
           1401G]
          Length = 475

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 157/317 (49%), Gaps = 25/317 (7%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E+LS   KL K     + K K    DI  + R       E+   L+ +D+   V +K
Sbjct: 1   MAFENLS--EKLQKALRKLTGKGKISENDINQASR-------EIRLALLEADVNFKVVKK 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++ +  +   K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ 
Sbjct: 52  FIKTIKAEALGKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQ 110

Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDA 178
           G GKTT +GKL+  +  +   + +L AGD +R AAIDQLK      S D  V SE  +D 
Sbjct: 111 GTGKTTTVGKLANYLIKNKKARPLLIAGDIYRPAAIDQLKTIG--ASLDVPVYSENNTDV 168

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            A+      QA     D +IIDTAGRL  +  LM  +  ++      D   P +++ V D
Sbjct: 169 VAIVKNGLMQADRNHNDYVIIDTAGRLEIDDQLMDELKNIV------DVAHPENIILVAD 222

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQ A    E F++    TGLI+TK+DG  RGG  + I     +P+ F G GE + +L
Sbjct: 223 AMTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTEL 282

Query: 299 EPFVAKDFSAVITGCLD 315
           + F     ++ I G  D
Sbjct: 283 DTFHPDRMASRILGMGD 299


>gi|45360609|ref|NP_988977.1| signal recognition particle 54kDa [Xenopus (Silurana) tropicalis]
 gi|38174419|gb|AAH61368.1| signal recognition particle 54 [Xenopus (Silurana) tropicalis]
          Length = 504

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KPNVIMFVGLQGSGKTTTCTKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +AYE  ++ + +  +++I+DT+GR      L     +M++V   +    
Sbjct: 160 YGSYTEMDPVNIAYEGVEKFKNENFEIVIVDTSGRHKQEDSLFE---EMLQVSNAVQ--- 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 214 PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|164688563|ref|ZP_02212591.1| hypothetical protein CLOBAR_02208 [Clostridium bartlettii DSM
           16795]
 gi|164602976|gb|EDQ96441.1| hypothetical protein CLOBAR_02208 [Clostridium bartlettii DSM
           16795]
          Length = 450

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 112/210 (53%), Gaps = 10/210 (4%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P +I++VG+ G GKTT  GKL       G K +L A D +R AAI QL++     S 
Sbjct: 98  SKPPTIIMMVGLQGAGKTTTSGKLGGYFKKQGKKPLLVACDVYRPAAIKQLEVVG--KSL 155

Query: 168 DFVCSEIG--SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           D     +G   +   +A      A     D++IIDTAGRLH +  LM  + K I+   R 
Sbjct: 156 DIEVFNMGDKENPVNIAKAGLSHAIKNNNDLVIIDTAGRLHIDEELMDEL-KSIKSEVR- 213

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               PH +L V+D+ TGQ+A+   E F    G  G+++TK+DG  RGG  + I    + P
Sbjct: 214 ----PHEILLVVDSMTGQDAVNVAESFDNALGIDGVVLTKLDGDTRGGAALSIRAVTQKP 269

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G+GE ++DLEPF     ++ I G  D
Sbjct: 270 IKFIGMGEKLDDLEPFHPDRMASRILGMGD 299


>gi|315653407|ref|ZP_07906329.1| exopolyphosphatase [Lactobacillus iners ATCC 55195]
 gi|325913497|ref|ZP_08175863.1| signal recognition particle protein [Lactobacillus iners UPII 60-B]
 gi|315489332|gb|EFU78972.1| exopolyphosphatase [Lactobacillus iners ATCC 55195]
 gi|325477266|gb|EGC80412.1| signal recognition particle protein [Lactobacillus iners UPII 60-B]
          Length = 475

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 157/317 (49%), Gaps = 25/317 (7%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E+LS   KL K     + K K    DI  + R       E+   L+ +D+   V +K
Sbjct: 1   MAFENLS--EKLQKALRKLTGKGKISENDINQASR-------EIRLALLEADVNFKVVKK 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++ +  +   K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ 
Sbjct: 52  FIKTIKAEALGKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQ 110

Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDA 178
           G GKTT +GKL+  +  +   + +L AGD +R AAIDQLK      S D  V SE  +D 
Sbjct: 111 GTGKTTTVGKLANYLIKNKKARPLLIAGDIYRPAAIDQLKTIG--ASLDVPVYSENNTDV 168

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            A+      QA     D +IIDTAGRL  +  LM  +  ++      D   P +++ V D
Sbjct: 169 VAIVKNGLMQADRNHNDYVIIDTAGRLEIDDQLMDELKNIV------DVAHPENIILVAD 222

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQ A    E F++    TGLI+TK+DG  RGG  + I     +P+ F G GE + +L
Sbjct: 223 AMTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTEL 282

Query: 299 EPFVAKDFSAVITGCLD 315
           + F     ++ I G  D
Sbjct: 283 DTFHPDRMASRILGMGD 299


>gi|309809516|ref|ZP_07703374.1| signal recognition particle protein [Lactobacillus iners SPIN
           2503V10-D]
 gi|312874520|ref|ZP_07734545.1| signal recognition particle protein [Lactobacillus iners LEAF
           2053A-b]
 gi|308170188|gb|EFO72223.1| signal recognition particle protein [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089911|gb|EFQ48330.1| signal recognition particle protein [Lactobacillus iners LEAF
           2053A-b]
          Length = 475

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 157/317 (49%), Gaps = 25/317 (7%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E+LS   KL K     + K K    DI  + R       E+   L+ +D+   V +K
Sbjct: 1   MAFENLS--EKLQKALRKLTGKGKISENDINQASR-------EIRLALLEADVNFKVVKK 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++ +  +   K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ 
Sbjct: 52  FIKTIKAEALGKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQ 110

Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDA 178
           G GKTT +GKL+  +  +   + +L AGD +R AAIDQLK      S D  V SE  +D 
Sbjct: 111 GTGKTTTVGKLANYLIKNKKARPLLIAGDIYRPAAIDQLKTIG--ASLDVPVYSENNTDV 168

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            A+      QA     D +IIDTAGRL  +  LM  +  ++      D   P +++ V D
Sbjct: 169 VAIVKNGLMQADRNHNDYVIIDTAGRLEIDDQLMDELKNIV------DVAHPENIILVAD 222

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQ A    E F++    TGLI+TK+DG  RGG  + I     +P+ F G GE + +L
Sbjct: 223 AMTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTEL 282

Query: 299 EPFVAKDFSAVITGCLD 315
           + F     ++ I G  D
Sbjct: 283 DTFHPDRMASRILGMGD 299


>gi|238798966|ref|ZP_04642429.1| Signal recognition particle protein [Yersinia mollaretii ATCC
           43969]
 gi|238717195|gb|EEQ09048.1| Signal recognition particle protein [Yersinia mollaretii ATCC
           43969]
          Length = 453

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/212 (37%), Positives = 115/212 (54%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +   K V++ + D +R AAI QL+  A + S
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQQVS 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++        
Sbjct: 157 IDFFPSDVQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQI-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE    LEPF     ++ I G  D
Sbjct: 268 KPIKFLGVGEKTEALEPFHPDRVASRILGMGD 299


>gi|226496107|ref|NP_001142208.1| hypothetical protein LOC100274376 [Zea mays]
 gi|194702286|gb|ACF85227.1| unknown [Zea mays]
 gi|194707600|gb|ACF87884.1| unknown [Zea mays]
          Length = 496

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 112/222 (50%), Gaps = 7/222 (3%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           ML P  KP       +P V++ VG+ G GKTT   K +      G K  L   DTFR+ A
Sbjct: 86  MLDP-GKPSFTPKKGKPSVVMFVGLQGSGKTTTCTKYAYYHQKKGFKPALVCADTFRAGA 144

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            DQLK  A +    F  S + SD   +A E  ++ + +  D++I+DT+GR    + L   
Sbjct: 145 FDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEE 204

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + ++    K      P  V+ V+D++ GQ A  Q + F        +I+TKMDG A+GGG
Sbjct: 205 MRQVSEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIITKMDGHAKGGG 258

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
            +  V   K PV F+G GE I++ E F  K F + + G  D+
Sbjct: 259 ALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLLGMGDW 300


>gi|149911445|ref|ZP_01900062.1| signal recognition particle protein [Moritella sp. PE36]
 gi|149805476|gb|EDM65483.1| signal recognition particle protein [Moritella sp. PE36]
          Length = 464

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 153/307 (49%), Gaps = 31/307 (10%)

Query: 30  EGITDIISS---------RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77
           E +TD +S+         R  +D V++ L ++   L+ +D+ + V ++ ++ +      +
Sbjct: 3   ENLTDRLSATLKNVSGRGRLTEDNVKDTLREVRMALLEADVALPVVREFIKNVKENALGQ 62

Query: 78  DVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           DVS      Q  +  V   +   +   ++  N   +  P V+++ G+ G GKTT + KLS
Sbjct: 63  DVSKSLNPGQAFIKIVQAELESAMGNANETLNL-AAQPPAVLMMAGLQGAGKTTTVAKLS 121

Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
             + +   K V++ + D +R AAI QL+  A     +F  S I      +A  A + A+ 
Sbjct: 122 LFLKEREKKSVLVVSTDVYRPAAIKQLETLAAEVDVEFFPSNIEQKPVDIANAAIEYARK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQ 248
             +DV+I+DTAGRLH ++ +M  I          D HA   P   L V+DA TGQ+A   
Sbjct: 182 SFIDVVIVDTAGRLHVDTDMMQEIQ---------DLHAAINPVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F+     TG+I+TK DG ARGG  + I      P+ F+G+GE I+ LEPF  +  ++
Sbjct: 233 AAAFNETLPLTGIILTKADGDARGGAALSIRHITGKPIKFIGMGEKIDALEPFHPERIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|115440231|ref|NP_001044395.1| Os01g0772800 [Oryza sativa Japonica Group]
 gi|20160917|dbj|BAB89854.1| putative signal recognition particle 54kD protein [Oryza sativa
           Japonica Group]
 gi|21743252|dbj|BAC03250.1| putative signal recognition particle 54kD protein [Oryza sativa
           Japonica Group]
 gi|32879776|dbj|BAC79360.1| signal recognition particle 54kDa subunit [Oryza sativa Japonica
           Group]
 gi|113533926|dbj|BAF06309.1| Os01g0772800 [Oryza sativa Japonica Group]
 gi|215767979|dbj|BAH00208.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222619331|gb|EEE55463.1| hypothetical protein OsJ_03626 [Oryza sativa Japonica Group]
          Length = 496

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 143/290 (49%), Gaps = 19/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86
           +I  + L D +  E+   L++SD+   +        ++IV  E L     K   +Q+ ++
Sbjct: 22  VIDEKVLSDCL-NEISRALLQSDVQFKMVRDMQSNIKRIVNLETLAAGTNKRRIIQQAVF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             +EL + ML P  KP       +P V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  --TELCN-MLDP-GKPSFTPKKGKPCVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + +  D++I+DT+GR  
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHK 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
             + L   + ++    K      P  V+ V+D++ GQ A  Q + F        +I+TKM
Sbjct: 197 QEAALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKM 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           DG A+GGG +  V   K PV F+G GE I++ E F  K F + + G  D+
Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLLGMGDW 300


>gi|242308897|ref|ZP_04808052.1| signal recognition particle protein [Helicobacter pullorum MIT
           98-5489]
 gi|239524561|gb|EEQ64427.1| signal recognition particle protein [Helicobacter pullorum MIT
           98-5489]
          Length = 446

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 149/274 (54%), Gaps = 17/274 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +EL+  L++SD+   V + ++EE+  K     +  +  L  + E +  +L   + P N+ 
Sbjct: 30  DELKKTLLKSDVHYKVLKSLLEEIEQKTKLAGIGKENFLNALKESLTHIL---TAPGNYG 86

Query: 107 F---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           F      P ++L+ G+ G GKTT   KL+  + +   KV+LAA D  R AA++QL+  + 
Sbjct: 87  FIFAPKPPTIVLMAGLQGSGKTTTTAKLANYLKNKQKKVLLAACDLQRLAAVEQLRQLSL 146

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +   DF   E  S    +A  A ++A +   DVLI+D+AGRL  +  LM    + ++ +K
Sbjct: 147 QVEVDFFYEENKS-PIEIAIAAKEKAISGLYDVLIVDSAGRLAIDEDLM----QELQGIK 201

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             D   P+ +  V+D+ +GQ+ ++   +FH     +G+I++K DG ++GG  I + + H+
Sbjct: 202 --DSIQPNEIFYVVDSLSGQDGVKSAAIFHEKMDLSGVILSKFDGDSKGG--IALSIAHQ 257

Query: 284 --IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             IP+ F+GVGE I DLE F+ +     + G  D
Sbjct: 258 LGIPLRFIGVGEKIPDLEVFIPQRIVGRLMGAGD 291


>gi|330894530|gb|EGH27191.1| signal recognition particle protein [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 458

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 151/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L+ D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+   D +R AAI QL+  A+     F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVWVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH +  +M  I  +    K      P   L V+DA TGQ+A    
Sbjct: 180 RLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|117923817|ref|YP_864434.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Magnetococcus sp. MC-1]
 gi|117607573|gb|ABK43028.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Magnetococcus sp. MC-1]
          Length = 462

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 149/287 (51%), Gaps = 16/287 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL---YDVSELI 92
           +S + + D +RE +   L+ +D+ + V +  +  +  K  A  V V + L     V +++
Sbjct: 22  LSEQNIKDALRE-VRIALLEADVNLNVTKAFIRRVQEK--AIGVEVLKSLTPGQQVIKIV 78

Query: 93  HKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGD 148
           H  L+ +    N   +     P V+++ G+ G GKTT   KL+K++ D   K  +LA+ D
Sbjct: 79  HDELVAVMGAANESLNLANQPPVVVMMAGLQGSGKTTSTAKLAKRLIDKERKKCLLASLD 138

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +R AA+ QL+   ++  A  + +E   +   +A  A ++A+    DVL +DTAGRLH +
Sbjct: 139 VYRPAAMKQLQTVGEQVGATVLPTEPTENPREIAKRALEEAKKGGFDVLFLDTAGRLHID 198

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM+ +  +  ++       PH +L V DA TGQ+A+   + F      TG++++K DG
Sbjct: 199 EALMSELADVAALVN------PHEILFVADAMTGQDAVSVAKNFDDRLNITGVLLSKTDG 252

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            ARGG  + I      P+ FLG GE ++ LEPF     ++ I G  D
Sbjct: 253 DARGGAALSIREVTGKPIKFLGTGEKLDGLEPFHPDRVASRILGMGD 299


>gi|118594463|ref|ZP_01551810.1| Signal recognition particle protein [Methylophilales bacterium
           HTCC2181]
 gi|118440241|gb|EAV46868.1| Signal recognition particle protein [Methylophilales bacterium
           HTCC2181]
          Length = 450

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 145/286 (50%), Gaps = 15/286 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
            +   + D +RE +   LI +D+ + V +  ++++  K    +V       Q ++  V +
Sbjct: 22  FTEENISDAMRE-VRMALIEADVAIPVVKYFIDKVKQKALGAEVLSSISPGQAIIKIVQD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            +  ++   S+  + D + RP V IL+ G+ G GKTT  GKL+K +++   K++L + D 
Sbjct: 81  ELTDLMG--SERSSLDLAARPPVVILMAGLQGSGKTTTAGKLAKILTEEKKKILLVSADV 138

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAIDQLK  A     D   S        +A +A K A     DV+I DTAGRL  + 
Sbjct: 139 YRPAAIDQLKTLASDLKVDCFNSSAKDKPNDIAKDALKFASKNFHDVIIFDTAGRLGIDE 198

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +M  I  + + L      +P   L V+DA  GQ+A+   + F      TG+++TK+DG 
Sbjct: 199 AMMTEIKLLHKTL------SPVETLFVVDAMQGQDAVNTAKAFGDALPLTGIVLTKLDGD 252

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+G+ E  N LEPF  +  ++ I G  D
Sbjct: 253 SRGGAALSVKHVTGKPIKFVGISEKPNGLEPFYPERMASRILGMGD 298


>gi|312130725|ref|YP_003998065.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Leadbetterella byssophila DSM 17132]
 gi|311907271|gb|ADQ17712.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Leadbetterella byssophila DSM 17132]
          Length = 438

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 146/294 (49%), Gaps = 8/294 (2%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           A  +LK K  ITDI  +  + + +R  L D  +   +   V  K+ +E + ++    V  
Sbjct: 12  AFKTLKGKGKITDINIASTVKE-IRRALMDADVNYKVAKEVTDKVKQEAIDRKVMIAVEP 70

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
            ++   + +     LM   K    +    P V+L+ G+ G GKTT  GK +  +   G +
Sbjct: 71  GQLFVKIVQEELTALMG-GKAETVNLKGSPAVVLIAGLQGSGKTTFSGKFANYLKKQGKQ 129

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           VML A D +R AAI QL++  ++   D        DA  +A  A  +A++K   ++I+DT
Sbjct: 130 VMLVAADVYRPAAITQLQVLGEQIGVDVYAEPENKDAVNIARNAVAEAKSKGKSIVIVDT 189

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL  + ++M  +  + + +      +P  +L V+D+ TGQ+A+   + F+      G+
Sbjct: 190 AGRLAVDEVMMTEVENIKKAI------SPSEILFVVDSMTGQDAVNTAKAFNDRLDFDGV 243

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++TK+DG +RGG  + I      PV F+  GE + DL+ F     ++ I G  D
Sbjct: 244 VLTKLDGDSRGGAALSIRAVVDKPVKFMSTGEKMEDLDIFHPDRMASRILGMGD 297


>gi|315648170|ref|ZP_07901271.1| signal recognition particle protein [Paenibacillus vortex V453]
 gi|315276816|gb|EFU40159.1| signal recognition particle protein [Paenibacillus vortex V453]
          Length = 460

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 135/267 (50%), Gaps = 10/267 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L+ +D+   V +  V ++  K   K+V    +   V+ D+       LM  S+      +
Sbjct: 39  LLEADVNFKVVKDFVSKVKEKAIGKEVMDSFTPGMVIIDIVNKEMTELMGGSQAKLVKSN 98

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P VI++ G+ G GKTT  GKL+K +     + +L AGD +R AAI QL++  ++ +  
Sbjct: 99  KPPTVIMMAGLQGAGKTTTSGKLAKLLQKQNSRPLLVAGDIYRPAAIKQLEVLGEQINVP 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                  +    +A +  + A+    D +IIDTAGRLH +  LM  + ++  V+      
Sbjct: 159 VFSLGDKTSPVEIAKQGLQHAKDNGHDYVIIDTAGRLHVDEELMEELKQIHSVVN----- 213

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  VL V+DA TGQ+A+   E F+     TG+++TK+DG  RGG  + +      P+ F
Sbjct: 214 -PDEVLLVVDAMTGQDAVNVAESFNQQLTLTGVVLTKLDGDTRGGAALSVKAVTGCPIKF 272

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
             +GE I+ LEPF  +  ++ I G  D
Sbjct: 273 AALGEKIDALEPFHPERMASRILGMGD 299


>gi|304440220|ref|ZP_07400110.1| signal recognition particle protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371269|gb|EFM24885.1| signal recognition particle protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 445

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 112/211 (53%), Gaps = 6/211 (2%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
            D S  P V ++ G+ G GKTT  GKL+ +M   G + +L A D +R AAI QL++  + 
Sbjct: 94  LDLSKNPSVFVMAGLQGAGKTTTSGKLALQMKKRGKRPLLVACDVYRPAAIKQLQVVGEG 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                       +   +A  + + A+    DV+IIDTAGRLH +  LM    +++ ++K 
Sbjct: 154 IDVPVFTMGDKINPVDIAKASIEHAKRNGNDVVIIDTAGRLHVDENLM---DELLNIVKS 210

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           +DP      L VLDA TGQ+A+   E F      TG+I+TK+DG ARGG  + +     +
Sbjct: 211 VDPQEK---LLVLDAMTGQDAVNVTESFAEKLDLTGVILTKLDGDARGGAALSLRAVTDV 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+ +GE ++ LE F     S  I G  D
Sbjct: 268 PIKFISLGEKMDSLEVFYPDRMSNRILGMGD 298


>gi|259501562|ref|ZP_05744464.1| signal recognition particle protein [Lactobacillus iners DSM 13335]
 gi|302191464|ref|ZP_07267718.1| signal recognition particle protein [Lactobacillus iners AB-1]
 gi|325911788|ref|ZP_08174192.1| signal recognition particle protein [Lactobacillus iners UPII
           143-D]
 gi|259167080|gb|EEW51575.1| signal recognition particle protein [Lactobacillus iners DSM 13335]
 gi|325476294|gb|EGC79456.1| signal recognition particle protein [Lactobacillus iners UPII
           143-D]
          Length = 475

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 157/317 (49%), Gaps = 25/317 (7%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E+LS   KL K     + K K    DI  + R       E+   L+ +D+   V +K
Sbjct: 1   MAFENLS--EKLQKALRKLTGKGKISENDINQASR-------EIRLALLEADVNFKVVKK 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++ +  +   K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ 
Sbjct: 52  FIKTIKAEALGKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQ 110

Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDA 178
           G GKTT +GKL+  +  +   + +L AGD +R AAIDQLK      S D  V SE  +D 
Sbjct: 111 GTGKTTTVGKLANYLIKNKKARPLLIAGDIYRPAAIDQLKTIG--ASLDVPVYSENNTDV 168

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            A+      QA     D +IIDTAGRL  +  LM  +  ++      D   P +++ V D
Sbjct: 169 VAIVENGLMQADRNHNDYVIIDTAGRLEIDDQLMDELKNIV------DVAHPENIILVAD 222

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQ A    E F++    TGLI+TK+DG  RGG  + I     +P+ F G GE + +L
Sbjct: 223 AMTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTEL 282

Query: 299 EPFVAKDFSAVITGCLD 315
           + F     ++ I G  D
Sbjct: 283 DTFHPDRMASRILGMGD 299


>gi|218189132|gb|EEC71559.1| hypothetical protein OsI_03915 [Oryza sativa Indica Group]
          Length = 496

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 143/290 (49%), Gaps = 19/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86
           +I  + L D +  E+   L++SD+   +        ++IV  E L     K   +Q+ ++
Sbjct: 22  VIDEKVLSDCL-NEISRALLQSDVQFKMVRDMQSNIKRIVNLETLAAGTNKRRIIQQAVF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             +EL + ML P  KP       +P V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  --TELCN-MLDP-GKPSFTPKKGKPCVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + +  D++I+DT+GR  
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHK 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
             + L   + ++    K      P  V+ V+D++ GQ A  Q + F        +I+TKM
Sbjct: 197 QEAALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKM 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           DG A+GGG +  V   K PV F+G GE I++ E F  K F + + G  D+
Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGERIDEFEVFDVKPFVSRLLGMGDW 300


>gi|330874827|gb|EGH08976.1| signal recognition particle protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 501

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L+ D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +D++I+DTAGRLH +  +M  I  +    K      P   L V+DA TGQ+A    
Sbjct: 180 RLKFIDMVIVDTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTP 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|313674513|ref|YP_004052509.1| signal recognition particle subunit ffh/srp54 (srp54) [Marivirga
           tractuosa DSM 4126]
 gi|312941211|gb|ADR20401.1| signal recognition particle subunit FFH/SRP54 (srp54) [Marivirga
           tractuosa DSM 4126]
          Length = 443

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 137/274 (50%), Gaps = 13/274 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSK 101
           +E+   L+ +D+   VA+ + + +  +   +DV +     Q ++    E + KM+    K
Sbjct: 32  KEIRRALVDADVNFKVAKDVTDRIKEEALGRDVLISVSPGQLLVKITQEELAKMMG--EK 89

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
             +      P  IL+ G+ G GKTT  GKL+ ++   G +V+LAA D +R AAIDQLK+ 
Sbjct: 90  QVDISTEGSPSTILISGLQGSGKTTFSGKLANRLKKQGKQVLLAACDIYRPAAIDQLKVL 149

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            ++   +        DA  +A  A K A+     ++I+DTAGRL  + ++M  I  + + 
Sbjct: 150 GEQIGVEVYAEPENKDAVKIAKNAIKFAKDNGKSIVIVDTAGRLAVDEVMMKEISSLKKE 209

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           L       P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I   
Sbjct: 210 LN------PSETLFVVDSMTGQDAVNTAKTFNEQLDFDGVVLTKLDGDTRGGAALSIRTV 263

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + P+ F+  GE +  ++ F     +  I G  D
Sbjct: 264 VEKPIKFISSGEKMEAIDLFYPDRMAQRILGMGD 297


>gi|108563516|ref|YP_627832.1| signal recognition particle protein [Helicobacter pylori HPAG1]
 gi|107837289|gb|ABF85158.1| signal recognition particle protein [Helicobacter pylori HPAG1]
          Length = 448

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 154/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++  A  +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKASGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|291530123|emb|CBK95708.1| signal recognition particle subunit FFH/SRP54 (srp54) [Eubacterium
           siraeum 70/3]
          Length = 455

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 146/278 (52%), Gaps = 23/278 (8%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL--S 100
           E++  L+ +D+   V +  V ++  +    +V       Q+V+    +++H  L+ L  +
Sbjct: 34  EVKMALLEADVSFPVVKDFVAKVSERAVGSEVMNSLTPAQQVI----DIVHDELIKLMGT 89

Query: 101 KPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
                DF  +P  VI++ G+ G GKTT   KL+K +     + +L A D +R AAIDQLK
Sbjct: 90  DTARIDFPSKPPCVIMMCGLQGAGKTTHTAKLAKYLKKQNRRPLLVACDIYRPAAIDQLK 149

Query: 160 IWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +     S D    E+G ++   +A E+ K A+    DV+I+DTAGRLH +  LM      
Sbjct: 150 VVG--ASVDAHVFEMGQTNPVKIAKESIKYAKDNGFDVVILDTAGRLHIDEDLM------ 201

Query: 219 IRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            + LK +     P+ +L V+D+ TGQ+A+   + F+ +   TG+I+TK+DG  RGG  + 
Sbjct: 202 -KELKDIKAEVQPNEILLVVDSMTGQDAVNVAKSFNDMLDITGVILTKLDGDTRGGAALS 260

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++     P+ F GVGE  +DLE F     +  I G  D
Sbjct: 261 VLSVTGKPIKFAGVGEKTDDLEQFHPNRMADRILGMGD 298


>gi|1711511|sp|P49969|SR542_HORVU RecName: Full=Signal recognition particle 54 kDa protein 2;
           Short=SRP54
 gi|1020002|gb|AAA79355.1| signal recognition particle 54 kDa subunit [Hordeum vulgare]
 gi|326510077|dbj|BAJ87255.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 497

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 136/276 (49%), Gaps = 18/276 (6%)

Query: 48  ELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           E+   L++SD+   + +       KIV  E L     K   +Q+ ++  +EL + ML P 
Sbjct: 34  EISRALLQSDVQFKMVRDMQTNIRKIVNLETLAAGTNKRRIIQQAVF--TELCN-MLDP- 89

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            KP       +P V++ VG+ G GKTT   K +      G K  L   DTFR+ A DQLK
Sbjct: 90  GKPAFTPKKGKPSVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLK 149

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A +    F  S + SD   +A E  ++ + +  D++IIDT+GR    + L   + ++ 
Sbjct: 150 QNATKAKIPFYGSYMESDPVKIAVEGLERFRKENSDLIIIDTSGRHKQEAALFEEMRQVA 209

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
              K      P  V+ V+D + GQ A  Q + F   A    +I+TK+DG A+GGG +  V
Sbjct: 210 EATK------PDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIITKLDGHAKGGGALSAV 263

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              K PV F+G GE I++ E F  K F + + G  D
Sbjct: 264 AATKSPVIFIGTGEHIDEFEIFDVKPFVSRLLGMGD 299


>gi|253573492|ref|ZP_04850835.1| signal recognition particle protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847020|gb|EES75025.1| signal recognition particle protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 458

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 142/281 (50%), Gaps = 13/281 (4%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHK 94
           +D V E + ++   L+ +D+   V ++ + ++  K   K+V    +   V+ D+      
Sbjct: 25  EDDVNEAMREVRLALLEADVNFKVVKEFIAKVKEKAVGKEVMDSFTPGMVIIDIVNKELT 84

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            LM  S+      +  P V+++ G+ G GKTT   KL+K +     + +L AGD +R AA
Sbjct: 85  ELMGGSQAKLARSNRPPTVVMMAGLQGAGKTTTSAKLAKLLLKENHRPLLVAGDIYRPAA 144

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           I QL++  ++          G+    +A +A + A+    D ++IDTAGRLH +  LM  
Sbjct: 145 IKQLQVLGEQIKVPVFTLPEGNSPVEIARQALQHAKDNGNDYVLIDTAGRLHVDEELMEE 204

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + ++  V        P  VL V+DA TGQ+A+   E F+     TG+++TK+DG  RGG 
Sbjct: 205 LRQIHEVTN------PDEVLLVVDAMTGQDAVNVAESFNQQLTLTGVVLTKLDGDTRGGA 258

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F  +GE I+ LEPF  +  ++ I G  D
Sbjct: 259 ALSVKAVTGCPIKFAALGEKIDALEPFHPERMASRILGMGD 299


>gi|209694239|ref|YP_002262167.1| signal recognition particle protein [Aliivibrio salmonicida
           LFI1238]
 gi|208008190|emb|CAQ78333.1| signal recognition particle protein [Aliivibrio salmonicida
           LFI1238]
          Length = 461

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 156/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL ++ ++E L ++   L+ +D+ + V +  V+ +  K  A
Sbjct: 2   FDNLTDRLSKTLKNISGKGRLTEENIKETLREVRMALLEADVALPVVRDFVKRI--KENA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N      P VIL+ G+ G GKTT  G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQSELEAIMGDSNEALNL-ACQPPAVILMAGLQGAGKTTSTG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + +   K V++ + D +R AAI QL++ A     DF  S        +   A   
Sbjct: 119 KLAKLLKERDKKKVLVVSADVYRPAAIKQLEMLASEVDVDFFPSSADQKPIDIVDGAISH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALR 247
           A+ K  DV+I+DTAGRL  ++       +M+  +K+L  H  P   L V+DA TGQ+A  
Sbjct: 179 AKLKFFDVVIVDTAGRLAVDT-------EMMEEIKQLHAHVNPIETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F  +   TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF  +  +
Sbjct: 232 TAKAFGDILPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPERIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|167751041|ref|ZP_02423168.1| hypothetical protein EUBSIR_02026 [Eubacterium siraeum DSM 15702]
 gi|167655959|gb|EDS00089.1| hypothetical protein EUBSIR_02026 [Eubacterium siraeum DSM 15702]
          Length = 455

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/278 (32%), Positives = 146/278 (52%), Gaps = 23/278 (8%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL--S 100
           E++  L+ +D+   V +  V ++  +    +V       Q+V+    +++H  L+ L  +
Sbjct: 34  EVKMALLEADVSFPVVKDFVAKVSERAVGSEVMNSLTPAQQVI----DIVHDELIQLMGT 89

Query: 101 KPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
                DF S  P VI++ G+ G GKTT   KL+K +     + +L A D +R AAIDQLK
Sbjct: 90  DTARIDFPSKPPCVIMMCGLQGAGKTTHTAKLAKYLKKQNRRPLLVACDIYRPAAIDQLK 149

Query: 160 IWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +     S D    E+G ++   +A E+ K A+    DV+I+DTAGRLH +  LM      
Sbjct: 150 VVG--ASVDAHVFEMGQTNPVKIAKESIKYAKDNGFDVVILDTAGRLHIDEDLM------ 201

Query: 219 IRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            + LK +     P+ +L V+D+ TGQ+A+   + F+ +   TG+I+TK+DG  RGG  + 
Sbjct: 202 -KELKDIKAEVQPNEILLVVDSMTGQDAVNVAKSFNDMLDITGVILTKLDGDTRGGAALS 260

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++     P+ F GVGE  +DLE F     +  I G  D
Sbjct: 261 VLSVTGKPIKFAGVGEKTDDLEQFHPNRMADRILGMGD 298


>gi|27573161|gb|AAO19980.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573163|gb|AAO19981.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573169|gb|AAO19984.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573173|gb|AAO19986.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|36939127|gb|AAQ86943.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|36939164|gb|AAQ86950.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|37623912|gb|AAQ95588.1| regulatory protein [Neisseria gonorrhoeae]
 gi|37623914|gb|AAQ95589.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 311

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 115/196 (58%), Gaps = 2/196 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   +    G D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQTTG-DSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRL 205
           +A+ +D+++ DTAGRL
Sbjct: 295 KARGIDIVLADTAGRL 310


>gi|254509217|ref|ZP_05121314.1| signal recognition particle protein [Vibrio parahaemolyticus 16]
 gi|219547875|gb|EED24903.1| signal recognition particle protein [Vibrio parahaemolyticus 16]
          Length = 462

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 152/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  ++ +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFIKRV--KEAA 59

Query: 77  KDVSVQRVLYDVSELIH------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             V V + L    E I       + +M  S       +  P VIL+ G+ G GKTT +GK
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQGELEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK + +   K V++ + D +R AAI QL+  A     DF  S        +A  A   A
Sbjct: 120 LSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSADQKPIDIANAAIDHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL++DTAGRL  +  +M  I ++   +       P   L V+DA TGQ+A    
Sbjct: 180 KKKFYDVLVVDTAGRLAIDEQMMGEIKELHSAID------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFGDTLPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|157369096|ref|YP_001477085.1| signal recognition particle protein [Serratia proteamaculans 568]
 gi|157320860|gb|ABV39957.1| signal recognition particle protein [Serratia proteamaculans 568]
          Length = 453

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 114/209 (54%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +   K V++ + D +R AAI QL+  A+   
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAESVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++   +K   
Sbjct: 157 IDFFPSDVKEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I      P+
Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLGVGE    LEPF     ++ I G  D
Sbjct: 271 KFLGVGEKTEALEPFHPDRVASRILGMGD 299


>gi|330959140|gb|EGH59400.1| signal recognition particle protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 458

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 153/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVEIAQAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH +  +M  I  +   +K  +       L V+DA TGQ+A    
Sbjct: 180 KLKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVKSAE------TLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|254481747|ref|ZP_05094990.1| signal recognition particle protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037876|gb|EEB78540.1| signal recognition particle protein [marine gamma proteobacterium
           HTCC2148]
          Length = 468

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 149/308 (48%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  I     L +D ++E L ++   L+ +D+ + V ++ VE +  +   
Sbjct: 2   FQSLSDRLSNSLRSISGKATLTEDNIQETLREVRMALLEADVALPVVKQFVESVKQRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  L  V   +  ++   ++  N   +  P VIL+ G+ G GKTT + KL
Sbjct: 62  QEVMKSLSPGQVFLKIVQSELESVMGSANEGLNL-ATQPPAVILMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K V + + D +R AAI QL+  A     DF  SE       +A  A   A+
Sbjct: 121 AKLLKERDKKKVTVVSADVYRPAAIKQLETLAAEVGVDFFPSESSEKPVDIATAALSHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
               DVLI+DTAGRL  +  +MA I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 KSFSDVLIVDTAGRLAVDEDMMAEIAQL---------HASVNPIETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+I+TK+D   RGG  + +      P+ FLGVGE I  L+PF     +
Sbjct: 232 TAKAFGETLPLTGVILTKVDADTRGGAALSVRSITGKPIKFLGVGEKIAALDPFHPDRLA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|188585994|ref|YP_001917539.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350681|gb|ACB84951.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 447

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 116/211 (54%), Gaps = 7/211 (3%)

Query: 106 DFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           +FS +P  VI++ G+ G GKTT   KL+KK    G   ++ A DT R AAI QL++  ++
Sbjct: 94  NFSDQPPTVIMLSGLQGTGKTTASAKLAKKFKKDGKNPLMVACDTQRPAAIKQLQVLGEQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
           T             A +A  A + A+  ++DV+I+DTAGRLH +  LM  + ++   ++ 
Sbjct: 154 TDIPVFSMGDKQHPADIAKGAVEHAKKNQMDVVILDTAGRLHIDEDLMTELREVESSVE- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                PH +L V+DA TGQ+A+   E F      +G++MTK+DG  RGG  + +      
Sbjct: 213 -----PHEILLVVDAMTGQDAVNVAERFDQDLDLSGIVMTKLDGDTRGGAALSVKKVTGK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +++LE F     ++ I G  D
Sbjct: 268 PIKFIGTGEKVDELEVFHPDRLASRILGMGD 298


>gi|148223543|ref|NP_001080564.1| signal recognition particle 54kDa [Xenopus laevis]
 gi|27924197|gb|AAH44991.1| Srp54 protein [Xenopus laevis]
          Length = 504

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KPNVIMFVGLQGSGKTTTCTKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +AYE  ++ + +  +++I+DT+GR      L     +M++V   +    
Sbjct: 160 YGSYTEMDPVNIAYEGVEKFKNENFEIVIVDTSGRHKQEDSLFE---EMLQVSNAVQ--- 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 214 PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|27573185|gb|AAO19992.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 311

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 116/196 (59%), Gaps = 2/196 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRL 205
           +A+ +D+++ DTAGRL
Sbjct: 295 KARGIDIVLADTAGRL 310


>gi|222528961|ref|YP_002572843.1| signal recognition particle protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455808|gb|ACM60070.1| signal recognition particle protein [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 443

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 105/201 (52%), Gaps = 6/201 (2%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           ++VG+ G GKTT  GKL+  +   G   +L A D +R AAI QL++ A +          
Sbjct: 104 MMVGLQGSGKTTTAGKLAGLLKRQGKNPLLVACDIYRPAAIKQLEVVAQKVGVKCFADYN 163

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             DA  +A E  + A+  + DV I+DTAGRLH N  LM  +  +   +K      P  +L
Sbjct: 164 SKDAVKIAKEGIEFAKVSRCDVAIVDTAGRLHINQELMDELVAIKNAIK------PTEIL 217

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDA TGQ+A+     F+   G  G+IMTK+DG  RGG  + +      P+ F GVGE 
Sbjct: 218 LVLDAMTGQDAVNVAAAFNEQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVGEK 277

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           + DLE F     ++ I G  D
Sbjct: 278 MEDLEAFHPDRMASRILGMGD 298


>gi|159042909|ref|YP_001531703.1| signal recognition particle protein [Dinoroseobacter shibae DFL 12]
 gi|157910669|gb|ABV92102.1| signal recognition particle protein [Dinoroseobacter shibae DFL 12]
          Length = 504

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 133/256 (51%), Gaps = 10/256 (3%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           AV +K   + +TK       V ++++D  EL+H +L     P      + P  IL+VG+ 
Sbjct: 54  AVQEKATGQAVTKSVTPGQQVVKIVHD--ELVH-VLQGDEDPGALKIDNPPAPILMVGLQ 110

Query: 121 GVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT   K++K++ +  G K+++A+ D  R AA++QL I   +   D +    G D  
Sbjct: 111 GGGKTTTTAKIAKRLKERDGKKILMASLDVNRPAAMEQLAILGAQIGVDTLPIVKGEDPV 170

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A  A  QA     DV ++DTAGRL  +  LMA + + +R     D   P   L V+D 
Sbjct: 171 AIARRAKTQASLGGYDVYMLDTAGRLSIDEELMAQV-EAVR-----DVANPRETLLVVDG 224

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ+A+   E F    G TG+++T+MDG  RGG  + +      P+ F+G+GE ++ LE
Sbjct: 225 LTGQDAVTTAENFDDRIGITGVVLTRMDGDGRGGAALSMRAVTGRPIRFVGLGEKMDALE 284

Query: 300 PFVAKDFSAVITGCLD 315
            F     +  I G  D
Sbjct: 285 TFEPDRVAGRILGMGD 300


>gi|254449728|ref|ZP_05063165.1| signal recognition particle protein [Octadecabacter antarcticus
           238]
 gi|198264134|gb|EDY88404.1| signal recognition particle protein [Octadecabacter antarcticus
           238]
          Length = 502

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 149/286 (52%), Gaps = 21/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSE 90
           +D V+  L ++   L+ +D+ + VA+ +++ +  K   + V+        V ++++D  E
Sbjct: 24  EDDVKTALREVRIALLEADVSLPVARDLIKAVQEKASGQSVTKSVTPGQQVVKIVHD--E 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDT 149
           L+H +L     P      + P  IL+VG+ G GKTT   KL+K++ D  G KV++A+ D 
Sbjct: 82  LVH-VLQGDGDPGALKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKDREGKKVLMASLDV 140

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            R AA++QL+I   +   D +    G D   +A  A   A     DV I+DTAGRLH ++
Sbjct: 141 NRPAAMEQLQILGAQIGVDTLPIVKGEDPVQIAKRAKTAAAMGGYDVYILDTAGRLHIDA 200

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L+A    +  V +      P   L V+D  TGQ+A+     F    G TG+++T+MDG 
Sbjct: 201 ELIAQAAAVRDVAQ------PRETLLVVDGLTGQDAVNVATEFDDKIGVTGVVLTRMDGD 254

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            RGG  + +      P+ F+G+GE ++ +E F A+  +  I G  D
Sbjct: 255 GRGGAALSMRAVTGKPIRFVGLGEKLDAIEEFHAERVAGRILGMGD 300


>gi|77919819|ref|YP_357634.1| signal recognition particle protein [Pelobacter carbinolicus DSM
           2380]
 gi|77545902|gb|ABA89464.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pelobacter
           carbinolicus DSM 2380]
          Length = 451

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 145/286 (50%), Gaps = 16/286 (5%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  +D +++ + ++   L+ +D+   V +  V  +  +   ++V       Q+V+  V +
Sbjct: 23  RLTEDNIKQSMREVRLVLLEADVNFRVVKNFVATVRERAVGQEVLKSLNPAQQVIKVVRD 82

Query: 91  LIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            + + LM   +  + D + RP V I++ G+ G GKTT  GKL+ ++       +L   D 
Sbjct: 83  ELGR-LMGEGEDNSLDLAARPPVPIMLCGLQGAGKTTSCGKLALQLRRQKRNPLLVPADV 141

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK    + +     S    D   L  +A + A+    D LI+DTAGRLH + 
Sbjct: 142 YRPAAIEQLKTLGKQLNIPVFDSNPDVDPVKLCTDAREFAELNGYDTLILDTAGRLHVDQ 201

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LMA + ++ + L+      P  +L V DA TGQ+A+   E F      TG+I+TK+DG 
Sbjct: 202 ELMAELQRIKQALQ------PREILFVADAMTGQDAVNVAESFDQQLDVTGVILTKLDGD 255

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ARGG  + I      P+ F+G+GE ++ LE F     +  I G  D
Sbjct: 256 ARGGAALSIRAVTGKPIKFVGLGEKLDALEVFHGDRMAQRILGMGD 301


>gi|224541338|ref|ZP_03681877.1| hypothetical protein CATMIT_00498 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525775|gb|EEF94880.1| hypothetical protein CATMIT_00498 [Catenibacterium mitsuokai DSM
           15897]
          Length = 463

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 22/307 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE-LEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+E +  +     L +   EE L ++   L+ +D+   V ++ +     K   
Sbjct: 3   FESLSDRLQETLKKVTGQATLTESNMEEMLREIRLALLEADVNYQVVKEFIANTKEKAIG 62

Query: 77  KDV----SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           ++V       +VL    +++H  L+ L  ++    D+S  P +I++VG+ G GKTT  GK
Sbjct: 63  QNVIGSLKPGQVLV---KIVHDELVSLLGTEMVTVDYSKDPTIIMMVGLQGSGKTTTAGK 119

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++K +++  G K +L AGD +R AAIDQLK    + +         +    +  EA  +A
Sbjct: 120 IAKLITEKQGKKPLLVAGDIYRPAAIDQLKTLGAQLNIPVFSKGTDTPVETIVTEALAKA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DV+IIDTAGRL  +  LM  +  +  +        P  +L V+D+  GQ  +   
Sbjct: 180 RDDHNDVVIIDTAGRLQIDEKLMQELANVKEIAH------PDEILLVVDSLAGQEIVNVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIV-VTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             F+   G TG ++TK+DG ARGGG + I  VTH +P+ ++G GE +++++ F     + 
Sbjct: 234 STFNERLGITGAVLTKLDGDARGGGALSIRHVTH-VPIKYIGTGEKLDEIDYFYPDRMAD 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|254467983|ref|ZP_05081389.1| signal recognition particle protein [beta proteobacterium KB13]
 gi|207086793|gb|EDZ64076.1| signal recognition particle protein [beta proteobacterium KB13]
          Length = 451

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 146/289 (50%), Gaps = 23/289 (7%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDV 88
           +   + D +RE +   LI +D+ + V +  ++++  K    +V        ++ +++ D 
Sbjct: 23  TEENISDAMRE-VRIALIEADVAIPVVKFFIDQVKEKAIGTEVLKTVSPGDAIVKIVQD- 80

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            EL + ++ P + P N +    P VIL+ G+ G GKTT   KL+K + +   KVML + D
Sbjct: 81  -ELTN-LMGPENVPLNLE-KKPPSVILMAGLQGSGKTTTSAKLAKLLKEQKKKVMLVSAD 137

Query: 149 TFRSAAIDQLKIWADRTSADFVC--SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            +R AAIDQLK  A   S D  C  S        +A ++   A+    DV+I DTAGR  
Sbjct: 138 VYRPAAIDQLKTLA--ASIDVECYDSTEKDKPIKIAEKSIDYAKKHFFDVVIFDTAGRTA 195

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  +M  I  + +VLK      P   L V+D+  GQ+A+     F+     TG+++TK+
Sbjct: 196 IDEKMMKEIQALHKVLK------PAETLFVVDSMQGQDAINTASAFNDALELTGIVLTKI 249

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG +RGG  +        P+ F+GV E IN +EPF     +A I G  D
Sbjct: 250 DGDSRGGAALSAKHIIGKPIKFVGVNEKINGIEPFYPDRLAARILGMGD 298


>gi|149192337|ref|ZP_01870543.1| signal recognition particle protein [Vibrio shilonii AK1]
 gi|148833832|gb|EDL50863.1| signal recognition particle protein [Vibrio shilonii AK1]
          Length = 459

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 151/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL DD +++ L ++   L+ +D+ + V +  ++ +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTDDNIKDTLREVRMALLEADVALPVVRDFIKGV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPH-VILVVGVNGVGKTTVIGK 130
             V V + L    E I  +   L           D + +P  VIL+ G+ G GKTT +GK
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQAELESVMGESNEALDLAAQPPAVILMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK + +   K V++ + D +R AAI QL+  A     DF  S        +A  A   A
Sbjct: 120 LSKLLHERDKKKVLVVSADVYRPAAIKQLETLATDIGVDFFPSSADQKPIDIANAAIDHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A    
Sbjct: 180 KKKFYDVLIVDTAGRLAVDHEMMDEIKDLHSAIN------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      PV FLGVGE  + LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPVKFLGVGEKTDALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|124359738|gb|ABN06080.1| GTP-binding signal recognition particle SRP54, G-domain [Medicago
           truncatula]
          Length = 341

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 144/275 (52%), Gaps = 29/275 (10%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEEL-- 70
           +LT G  S   KLK    ++++     D + E + D+   L+ +D+ + V ++ V+ +  
Sbjct: 70  QLTTGLESAWNKLKG--EEVLTK----DNIVEPMRDIRRALLEADVSLPVVRRFVQSVTD 123

Query: 71  ------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVG 123
                 +T+    D  + ++++D  EL+  M   +S+     F+   P VIL+ G+ GVG
Sbjct: 124 QAVGVGVTRGVKPDQQLVKIVHD--ELVQLMGGEVSE---LTFAKTGPTVILLAGLQGVG 178

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTTV  KL+      G   ML AGD +R AAIDQL I   +       +      + +A 
Sbjct: 179 KTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAK 238

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           + F++A+ KK+DV+I+DTAGRL  +  +M  +  + RVL       P  VL V+DA TGQ
Sbjct: 239 QGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQ 292

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            A   V  F+   G TG I+TK+DG +RGG  + +
Sbjct: 293 EAAALVTTFNLEIGITGAILTKLDGDSRGGAALSV 327


>gi|27573165|gb|AAO19982.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573171|gb|AAO19985.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573179|gb|AAO19989.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573181|gb|AAO19990.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573187|gb|AAO19993.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573189|gb|AAO19994.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|37623916|gb|AAQ95590.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 311

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 115/196 (58%), Gaps = 2/196 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   +    G D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQTTG-DSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRL 205
           +A+ +D+++ DTAGRL
Sbjct: 295 KARGIDIVLADTAGRL 310


>gi|242054557|ref|XP_002456424.1| hypothetical protein SORBIDRAFT_03g036030 [Sorghum bicolor]
 gi|241928399|gb|EES01544.1| hypothetical protein SORBIDRAFT_03g036030 [Sorghum bicolor]
          Length = 496

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +EL + ML P  KP       +P V++ VG+ G GKTT   K +      G K  L   D
Sbjct: 81  TELCN-MLDP-GKPSFTPKKGKPSVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPALVCAD 138

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+ A DQLK  A +    F  S + SD   +A E  ++ + +  D++I+DT+GR    
Sbjct: 139 TFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQE 198

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           + L   + ++    K      P  V+ V+D++ GQ A  Q + F        +I+TKMDG
Sbjct: 199 AALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIITKMDG 252

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
            A+GGG +  V   K PV F+G GE I++ E F  K F + + G  D+
Sbjct: 253 HAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLLGMGDW 300


>gi|1711508|sp|P49968|SR541_HORVU RecName: Full=Signal recognition particle 54 kDa protein 1;
           Short=SRP54
 gi|1020000|gb|AAA79354.1| signal recognition particle 54 kDa subunit [Hordeum vulgare]
          Length = 497

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 136/276 (49%), Gaps = 18/276 (6%)

Query: 48  ELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           E+   L++SD+   + +       KIV  E L     K   +Q+ ++  +EL + ML P 
Sbjct: 34  EISRALLQSDVQFKMVRDMQTNIRKIVNLETLAAGTNKRRIIQQAVF--TELCN-MLDP- 89

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            KP       +P V++ VG+ G GKTT   K +      G K  L   DTFR+ A DQLK
Sbjct: 90  GKPAFTTKKGKPSVVMFVGLQGSGKTTTCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLK 149

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A +    F  S + SD   +A E  ++ + +  D++IIDT+GR    + L   + ++ 
Sbjct: 150 QNATKAKIPFYGSYMESDPVKIAVEGLERFRKENSDLIIIDTSGRHKQEAALFEEMRQVA 209

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
              K      P  V+ V+D + GQ A  Q + F   A    +I+TK+DG A+GGG +  V
Sbjct: 210 EATK------PDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIITKLDGHAKGGGALSAV 263

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              K PV F+G GE I++ E F  K F + + G  D
Sbjct: 264 AATKSPVIFIGTGEHIDEFEIFDVKPFVSRLLGMGD 299


>gi|206890926|ref|YP_002249714.1| signal recognition particle protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742864|gb|ACI21921.1| signal recognition particle protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 440

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 132/264 (50%), Gaps = 12/264 (4%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLM 97
           D   +E+   L+ +D+   V +  +E +  K   K++       Q+V+  V E + ++L 
Sbjct: 28  DAALKEIRIALLEADVNFKVVKAFIERVRQKAVGKEILESLSPAQQVIKIVYEELCELLG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             +        + P +I++VG++G GKTT   KL++     G + ML A D  R AAI+Q
Sbjct: 88  GSTSKIKLS-PNPPTIIMMVGLHGSGKTTTSAKLARLFKKQGRRPMLVAADLQRPAAIEQ 146

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L     +       S    D   L  +A K+A   + D +I+DTAGR+H +  LM  +  
Sbjct: 147 LVTLGKQIDVPVFHSYEIKDPRELCKDALKKAVIDRADPVIVDTAGRMHVDEELMRELQD 206

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +  VL       PH +L V DA TGQ+A+   + FH   G  G+I+TKMDG ARGG  + 
Sbjct: 207 VKNVLN------PHEILFVADAMTGQDAVNIAKSFHEKIGIDGVILTKMDGDARGGAALS 260

Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301
           I      P+  +G GE I+ ++ F
Sbjct: 261 IKEVTGKPIKLIGTGEKIDAIDEF 284


>gi|74318391|ref|YP_316131.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057886|gb|AAZ98326.1| Signal recognition particle protein [Thiobacillus denitrificans
           ATCC 25259]
          Length = 447

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 137/275 (49%), Gaps = 26/275 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE------LIHKMLMPLSKPFNWD 106
           L+ +D+ + V +  ++ +  +        Q VL  +S       ++H+ L  L    N D
Sbjct: 38  LLEADVALPVVKSFIDAVKARALG-----QEVLTSLSPGQALIGIVHEELTRLMGGENAD 92

Query: 107 F---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
               +  P VIL+ G+ G GKTT  GKL+  + +   KV+LA+ D +R AAIDQL+  A 
Sbjct: 93  LNLAATPPAVILMAGLQGSGKTTTSGKLALLLKNRKKKVLLASADVYRPAAIDQLRQLAK 152

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +    F  ++   D   +A  A   A+ +  DVLI+DTAGRL  +  +M  I  +     
Sbjct: 153 QLDVSFFDADSERDPLKIARAAQDHARKQFYDVLIVDTAGRLAIDEAMMNEIKAL----- 207

Query: 224 RLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
               HA   P   L V+DA  GQ+A+     F+     TG+++TK+DG ARGG  + +  
Sbjct: 208 ----HAAITPVETLFVVDAMQGQDAVNVARAFNEALPLTGVVLTKLDGDARGGAALSVRQ 263

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+ F+GVGE  N LEPF  +  +  I G  D
Sbjct: 264 ITGKPLKFIGVGEKPNGLEPFHPERMAQRILGMGD 298


>gi|315185661|gb|EFU19429.1| signal recognition particle subunit FFH/SRP54 (srp54) [Spirochaeta
           thermophila DSM 6578]
          Length = 443

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 103/203 (50%), Gaps = 6/203 (2%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +IL+ G+ G GKTT   KL+  +   G + +L A D  R AAIDQL+             
Sbjct: 103 IILLAGLQGSGKTTTAAKLALHLKKKGRRPLLVAADLARPAAIDQLETLGASIDVPVYTD 162

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               D  A+   A   A+ + VD LI+DTAGR   +  LM  + +++R L      +P  
Sbjct: 163 RSQKDPRAVVKRALSHAKRQAVDTLIVDTAGRHQVDRELMDELSRLVRDL------SPDE 216

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L V DA TGQ A+   + F+   G TG+++TK D   RGG  + I      P+ F+GVG
Sbjct: 217 ALLVADAMTGQTAVDVAKAFNEAVGITGVVLTKFDSDTRGGAALSIRTITGAPIKFIGVG 276

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E ++DLEPF     ++ I G  D
Sbjct: 277 EKVDDLEPFYPDRIASRILGMGD 299


>gi|309805506|ref|ZP_07699551.1| signal recognition particle protein [Lactobacillus iners LactinV
           09V1-c]
 gi|312874462|ref|ZP_07734492.1| signal recognition particle protein [Lactobacillus iners LEAF
           2052A-d]
 gi|308165157|gb|EFO67395.1| signal recognition particle protein [Lactobacillus iners LactinV
           09V1-c]
 gi|311090074|gb|EFQ48488.1| signal recognition particle protein [Lactobacillus iners LEAF
           2052A-d]
          Length = 475

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 156/316 (49%), Gaps = 23/316 (7%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E+LS   KL K     + K K    DI  + R       E+   L+ +D+   V +K
Sbjct: 1   MAFENLS--EKLQKALRKLTGKGKISENDINQASR-------EIRLALLEADVNFKVVKK 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++ +  +   K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ 
Sbjct: 52  FIKTIKAEALGKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQ 110

Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT +GKL+  +  +   + +L AGD +R AAIDQLK      +   V SE  +D  
Sbjct: 111 GTGKTTTVGKLANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLNVP-VYSENNTDVV 169

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+      QA     D +IIDTAGRL  +  LM  +  ++      D   P +++ V DA
Sbjct: 170 AIVENGLMQADRNHNDYVIIDTAGRLEIDDQLMDELKNIV------DVAHPENIILVADA 223

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ A    E F++    TGLI+TK+DG  RGG  + I     +P+ F G GE + +L+
Sbjct: 224 MTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELD 283

Query: 300 PFVAKDFSAVITGCLD 315
            F     ++ I G  D
Sbjct: 284 TFHPDRMASRILGMGD 299


>gi|27573159|gb|AAO19979.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 311

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 115/196 (58%), Gaps = 2/196 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   +    G D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQATG-DSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRL 205
           +A+ +D+++ DTAGRL
Sbjct: 295 KARGIDIVLADTAGRL 310


>gi|312871860|ref|ZP_07731944.1| signal recognition particle protein [Lactobacillus iners LEAF
           3008A-a]
 gi|312872406|ref|ZP_07732475.1| signal recognition particle protein [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091988|gb|EFQ50363.1| signal recognition particle protein [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092582|gb|EFQ50942.1| signal recognition particle protein [Lactobacillus iners LEAF
           3008A-a]
          Length = 475

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 156/316 (49%), Gaps = 23/316 (7%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E+LS   KL K     + K K    DI  + R       E+   L+ +D+   V +K
Sbjct: 1   MAFENLS--EKLQKALRKLTGKGKISENDINQASR-------EIRLALLEADVNFKVVKK 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++ +  +   K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ 
Sbjct: 52  FIKTIKAEALGKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQ 110

Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT +GKL+  +  +   + +L AGD +R AAIDQLK      +   V SE  +D  
Sbjct: 111 GTGKTTTVGKLANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLNVP-VYSENNTDVV 169

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+      QA     D +IIDTAGRL  +  LM  +  ++      D   P +++ V DA
Sbjct: 170 AIVENGLMQADRNHNDYVIIDTAGRLEIDDQLMDELKNIV------DVAHPENIILVADA 223

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ A    E F++    TGLI+TK+DG  RGG  + I     +P+ F G GE + +L+
Sbjct: 224 MTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELD 283

Query: 300 PFVAKDFSAVITGCLD 315
            F     ++ I G  D
Sbjct: 284 TFHPDRMASRILGMGD 299


>gi|309389191|gb|ADO77071.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Halanaerobium praevalens DSM 2228]
          Length = 446

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 152/306 (49%), Gaps = 20/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + KL++    +    +L +       +E++  L+ +D+   V +  ++++  +   
Sbjct: 3   FSSLAEKLQDTFNKLKGKGKLSEKDVKAALKEVKMALLEADVNYKVVKDFIKKIEERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V+E +   LM  SK      S  P +I++VG+ G GKTT  GKL
Sbjct: 63  NEVMESLTPGQHVIKIVNEEMQ-ALMGGSKEDIAISSEPPTIIMMVGLQGSGKTTSAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQA 189
           ++K+   G   +L AGD +R AAI QL++  +R   D     +G D+    +A  +   A
Sbjct: 122 ARKLDKDGKNPLLVAGDVYRPAAIRQLQVLGERL--DLPVFSMGDDSNPVDIAKGSINYA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            +   D +I+DTAGRLH +  +M  +  +   +       P  +L V+DA TGQ+A+   
Sbjct: 180 SSHNCDTIILDTAGRLHIDQEMMEELESIKAAVD------PDEILLVVDAMTGQDAVNVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F       G+++TKMDG ARGG  + I      P+ F G GE + DLE F     S+ 
Sbjct: 234 KNFDQRLDVDGIVLTKMDGDARGGAALSIKAITGKPIKFAGTGEKLADLETFHPDRMSSR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|313680228|ref|YP_004057967.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Oceanithermus profundus DSM 14977]
 gi|313152943|gb|ADR36794.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Oceanithermus profundus DSM 14977]
          Length = 434

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQ----KIVEELLT 72
           F + S +L++ +  +    R+ +     V  E+   L+ +D+   VA+    ++ E+ L 
Sbjct: 2   FENLSRRLQQTLDGLRGRGRIGEADLKKVMREIRMSLLEADVNFEVAKAFTKRVQEKALG 61

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           ++  + ++    +Y +   ++  L  L  S+P   +  H  +V  +VG+ G GKTT  GK
Sbjct: 62  QKVYESLTPAEQIYTI---VYDELKELLGSEPKQPELKHEGNVWFLVGLQGTGKTTAAGK 118

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++     G + +L A DT R AA DQL+I A++     +  + G   A  A    +   
Sbjct: 119 LARLYKSKGRRPLLVAADTQRPAARDQLRILAEQVGVPVLEVQNGEKPAETARRLREHLA 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGRL  +  LM  + ++       D   P   L V+DA  GQ AL    
Sbjct: 179 KDYRDLVIVDTAGRLQIDEALMDELAQLK------DELEPTETLLVVDAMMGQEALGVSR 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +GLI+TK+DG ARGG  +        P+YF G  E ++ LEPF     +  I
Sbjct: 233 TFDERIGVSGLILTKLDGDARGGAALSARYVTGKPIYFGGTSEKLDGLEPFYPDRLAQRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|294675927|ref|YP_003576542.1| signal recognition particle protein [Rhodobacter capsulatus SB
           1003]
 gi|294474747|gb|ADE84135.1| signal recognition particle protein [Rhodobacter capsulatus SB
           1003]
          Length = 502

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 141/274 (51%), Gaps = 12/274 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V +  V+++ TK     V+      Q+V+  V + I  ML      
Sbjct: 33  EVRTALLEADVSLPVVRDFVKKVETKATGAQVTKSITPGQQVVKIVHDEIVAMLSGEDAA 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIW 161
                 + P  IL+VG+ G GKTT   KL++++ +   K V++A+ D +R AA++QL I 
Sbjct: 93  DALKIDNPPAPILMVGLQGGGKTTTTAKLARRLKEREKKRVLMASLDIYRPAAMEQLAIL 152

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +   D +    G  A  +A  A  QA     DV ++DTAGRLH + +LM  + + +R 
Sbjct: 153 GTQIGVDTLPIVPGETAVQIAKRAKTQAAMGGYDVYLLDTAGRLHIDEVLMGEV-QQVR- 210

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
               D  +P   L V+D  TGQ A+   + F    G TG+++T+MDG  RGG  + +  T
Sbjct: 211 ----DAVSPRETLLVVDGLTGQVAVEVAQEFDDKIGITGVVLTRMDGDGRGGAALSMRAT 266

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ F+G+GE ++ LE F A   +  I G  D
Sbjct: 267 TGKPIRFVGLGEKMDALETFEASRIAGRILGMGD 300


>gi|303273580|ref|XP_003056150.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
 gi|226462234|gb|EEH59526.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
          Length = 559

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 139/275 (50%), Gaps = 23/275 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-- 106
           L+ +D+ + V ++ ++ +  K    +  K VS  + L  V   +   L  L   F  D  
Sbjct: 113 LLEADVSLPVVRRFIKSVEEKSIGVKVTKGVSASQQLTKV---VADELCELMGGFGGDKL 169

Query: 107 -FSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            F      P VIL+ G+ GVGKTT  GKL+  +   G + +L A D +R AAIDQLK   
Sbjct: 170 IFRKEGEGPTVILMAGLQGVGKTTACGKLALFLKAQGKQSLLVATDVYRPAAIDQLKKLG 229

Query: 163 DRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           ++   D    E+G+D +   +A    ++A+ +  DV+I+DTAGRL  + +LMA +    +
Sbjct: 230 EQI--DVPVFELGTDFSPPDIARSGVEKAKLENFDVVIVDTAGRLQVDEMLMAEL-LATK 286

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
              R D       L V+DA TGQ A      F+   G TG ++TKMDG  RGG  + +  
Sbjct: 287 AATRAD-----ETLLVVDAMTGQEAASLTAAFNDAVGITGAVLTKMDGDTRGGAALSVRE 341

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+ F+G GE ++ LEPF  +  +  I G  D
Sbjct: 342 VSGKPIKFIGSGEKLDALEPFFPERMTTRILGMGD 376


>gi|218782478|ref|YP_002433796.1| signal recognition particle protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763862|gb|ACL06328.1| signal recognition particle protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 442

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 142/285 (49%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           +S + + DG++E +   L+ +D+   V + ++  +  +   ++V       Q+V+  V+E
Sbjct: 22  LSEKNIQDGLKE-VRLALLEADVHYKVVKTLIAAIKERAVGQEVLESLTPGQQVVKIVNE 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  ++   ++  N    H P  I++VG+ G GKTT  GKL+  +   G K  L   D +
Sbjct: 81  ELTNLMGGANEEINLGGGH-PASIMLVGLQGSGKTTTAGKLAVYLRGQGRKPYLVPADVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI+QL       S     S+  S    +A  A  +   +  D +I+DTAGRLH +  
Sbjct: 140 RPAAIEQLTKIGKELSIPVYPSDTDSKPEKIAELARIKCAQEGCDTMILDTAGRLHIDDE 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LMA +G+    +K   P  P  +L V DA TGQ+A+   + F+      G+I+TKMDG A
Sbjct: 200 LMAELGR----IKATTP--PSDILLVADAMTGQDAVNMAKAFNDAMDVGGVILTKMDGDA 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+G GE  N  E F     ++ I G  D
Sbjct: 254 RGGAALSIRSITGKPIKFIGTGEKSNAFEAFHPNRMASRILGMGD 298


>gi|297584012|ref|YP_003699792.1| signal recognition particle protein [Bacillus selenitireducens
           MLS10]
 gi|297142469|gb|ADH99226.1| signal recognition particle protein [Bacillus selenitireducens
           MLS10]
          Length = 449

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 143/271 (52%), Gaps = 17/271 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +K V ++  +   +DV       Q+V+  V+E + +++       N   
Sbjct: 39  LLEADVNFKVVKKFVADVKERAVGQDVMESLTPGQQVIKVVNEELTRLMGGEQSKINT-A 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S  P V+++VG+ G GKTT  GKL+  +  +   K +L A D +R AAI QL+    +  
Sbjct: 98  SKPPTVVMMVGLQGAGKTTTTGKLANYLRKNHNRKPLLVAADIYRPAAIKQLETLGKQL- 156

Query: 167 ADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            D     +G   +   +A +A + A+ +  D ++IDTAGRLH ++ LM  + ++   +K 
Sbjct: 157 -DMPVFSLGDQVSPVEIARKAVEHAKEEHHDYVLIDTAGRLHIDNELMDELQQVKAEVK- 214

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  VL V+DA TGQ+A+   E F+     +G+++TK+DG  RGG  I +      
Sbjct: 215 -----PDEVLLVVDAMTGQDAVNVAESFNEQLELSGVVLTKLDGDTRGGAAISVKAVTDT 269

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F G+GE I+ LEPF  +  ++ I G  D
Sbjct: 270 PIKFAGMGEKIDQLEPFHPERMASRILGMGD 300


>gi|14601593|ref|NP_148133.1| signal recognition 54 kDa protein [Aeropyrum pernix K1]
 gi|12230645|sp|Q9YB62|SRP54_AERPE RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|5105423|dbj|BAA80736.1| signal recognition 54 kDa protein [Aeropyrum pernix K1]
          Length = 441

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 142/285 (49%), Gaps = 25/285 (8%)

Query: 43  DGVREELEDLLIRSDIGVA----VAQKIVEELLTKRYAKDVSVQ----RVLYDVSELIHK 94
           D   ++L+  LI++D+ V     V ++I E  L +     V+ +    +++Y+  EL+ K
Sbjct: 24  DAFVKDLQRELIKADVNVKLVLNVTRRIKERALKEEPPPGVTRRDWMIKIVYE--ELV-K 80

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           +     +P   D    P ++L+VGV G GKTT  GKL+      G KV L + DT R  A
Sbjct: 81  LFGGDQEP-QVDPPKTPWIVLLVGVQGSGKTTTAGKLAYYYVRRGYKVGLVSSDTHRPGA 139

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +QLK  A+   A F     G D A +A    +   ++  +++I+DTAGR         G
Sbjct: 140 YEQLKRLAEEAGAMFYGEREG-DPAEIARRGLEDLLSRGAEIVIVDTAGR--------HG 190

Query: 215 IGKMIRVLKRLDPHA----PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
            G+  R+L  +   A    P  V  V+DA+ GQ A+   E FH       +I+TKMDGTA
Sbjct: 191 HGEEARLLDEMKAIASKVRPDEVALVIDASIGQKAMGLAERFHKSTPIGSIIVTKMDGTA 250

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGGG +         + F+G GE + +LEPF  + F A I G  D
Sbjct: 251 RGGGALTAAAVTGARIKFIGTGETLGELEPFAPRRFVARILGMGD 295


>gi|302670925|ref|YP_003830885.1| signal recognition particle protein Ffh [Butyrivibrio
           proteoclasticus B316]
 gi|302395398|gb|ADL34303.1| signal recognition particle protein Ffh [Butyrivibrio
           proteoclasticus B316]
          Length = 457

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 141/274 (51%), Gaps = 11/274 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101
           +E++  L+ +D+   V ++ +  +  +   +DV       Q V+  V+E +  ++   + 
Sbjct: 33  KEVKMALLEADVSFKVVKQFISAVQERAVGEDVLNGLNPGQMVIKIVNEEMISLMGSETT 92

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                 ++   V+++ G+ G GKTT   K++ K+   G K +L A D +R AAIDQL+I 
Sbjct: 93  EIKLQPTNEITVLMMCGLQGAGKTTTAAKIAGKLKLKGRKPLLVACDIYRPAAIDQLQIN 152

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A +   DF      +D   +A  + ++A+ K  +V+IIDTAGRL  + I+M  +  +   
Sbjct: 153 ASKQEVDFFTLGSHADPVDIAKASIEEARKKGNNVVIIDTAGRLQIDDIMMQELVDIKNA 212

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +        H  L V+DA TGQ A+     F+   G  G+I++KMDG +RGG  +     
Sbjct: 213 V------GVHQTLLVVDAMTGQEAVNVASEFNEKVGVDGIILSKMDGDSRGGAALSTKAV 266

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ ++G+GE ++DLE F     ++ I G  D
Sbjct: 267 TGKPILYVGMGEKLSDLEQFYPDRMASRILGMGD 300


>gi|192361389|ref|YP_001982164.1| signal recognition particle protein [Cellvibrio japonicus Ueda107]
 gi|190687554|gb|ACE85232.1| signal recognition particle protein [Cellvibrio japonicus Ueda107]
          Length = 457

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  +    RL +D +++ L D+   L+ +D+ + V +  ++++ ++   
Sbjct: 2   FENLTDRLSHTLRSLTGKARLSEDNIKDALRDVRKALLEADVALPVVKAFIDQVRSRALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + +S      Q+ L  V   +   +   ++  N      P V+L+ G+ G GKTT + KL
Sbjct: 62  QQISKALNPGQQFLKIVEAELVATMGQANESLNL-AQQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 ARFLKEREKKKVLVVSADVYRPAAIRQLETLAADIGVDFFPSSGEQKPLDIARNAHDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH +  LM  I ++   LK      P   L V+DA  GQ+A+   +
Sbjct: 181 KQFFDVLIVDTAGRLHVDEELMVEIKELHASLK------PIETLFVIDAMIGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRHITGKPIKFLGMGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|109947829|ref|YP_665057.1| signal recognition particle protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109715050|emb|CAK00058.1| signal recognition particle protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 448

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 152/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+    A+++++++ T+  A  +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKAARELLKKVETQTKASGIGR 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS      F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAQGGSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVLI
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVQEIANNALKRAKEAQFDVLI 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMKELKEVKEIL------TPHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|115871973|ref|XP_780650.2| PREDICTED: similar to Signal recognition particle 54
           [Strongylocentrotus purpuratus]
 gi|115951374|ref|XP_001185704.1| PREDICTED: similar to Signal recognition particle 54
           [Strongylocentrotus purpuratus]
          Length = 510

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P++I+ VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A +    F
Sbjct: 100 KPNIIMFVGLQGSGKTTTCTKLAYYYQKKGWKVALICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A +  ++ + +  +++I+DT+GR      L         +L+  +  +
Sbjct: 160 YGSYTEVDPVIIAADGVEKFKKENFEIIIVDTSGRHKQEDSLFE------EMLQVANVTS 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K PV F+
Sbjct: 214 PDNIIFVMDASIGQACESQAKAFKEKVDVASVIITKLDGHAKGGGALSAVAATKSPVIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  K F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTKPFISKLLGMGD 299


>gi|329297075|ref|ZP_08254411.1| signal recognition particle protein [Plautia stali symbiont]
          Length = 453

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 160/322 (49%), Gaps = 33/322 (10%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  +  +      
Sbjct: 2   FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKEAAVG 61

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +DV+  R L    E I  +   L       +   N + +  P V+L+ G+ G GKTT +G
Sbjct: 62  QDVN--RSLTPGQEFIKIVRNELVAAMGAENNALNLN-AQPPAVVLMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL K + +    KV++ + D +R AAI QL+  A +   DF  S+       +   A K+
Sbjct: 119 KLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSDPSQKPVDIVNHALKE 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245
           A+ +  DVL++DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A
Sbjct: 179 ARLQFYDVLLVDTAGRLHVDEAMMDEIKQV---------HAAINPVETLFVVDAMTGQDA 229

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
               + F+     TG+I+TK+DG ARGG  + I      P+ F+G+ E  + LE F    
Sbjct: 230 ANTAKAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGMSEKTDALEAFYPDR 289

Query: 306 FSAVITG------CLDYGEEKI 321
            ++ I G       ++Y E K+
Sbjct: 290 IASRILGMGDVLSLIEYIESKV 311


>gi|294634744|ref|ZP_06713274.1| signal recognition particle protein [Edwardsiella tarda ATCC 23685]
 gi|291091843|gb|EFE24404.1| signal recognition particle protein [Edwardsiella tarda ATCC 23685]
          Length = 453

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 153/309 (49%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +D +++ L ++   L+ +D+ + V +  +  +  K  A
Sbjct: 2   FENLSDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRV--KESA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFS---HRPHVILVVGVNGVGKTTVIGK 130
               V + L    E +  +   L++     N + +     P V+L+ G+ G GKTT +GK
Sbjct: 60  LGQEVNKSLTPGQEFVKIVQDELTRAMGEANTELNLAAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +   K V++ + D +R AAI QL+  A     DF  S++      +   A   A
Sbjct: 120 LGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVGVDFFPSDVQERPLDIVQRALTHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K  DVLI+DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A 
Sbjct: 180 KQKFYDVLIVDTAGRLHVDEAMMEEIKQI---------HAAITPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     
Sbjct: 231 NTASAFNQALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRV 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|118602610|ref|YP_903825.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567549|gb|ABL02354.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 464

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 110/192 (57%), Gaps = 7/192 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++ G+ G GKTT I KL+  +      KV++ + D +R AAI+QL++ A +   +F
Sbjct: 100 PAVIMLAGLQGAGKTTSIAKLALYLKQRENKKVLVVSADVYRPAAIEQLEVLAKQVEVNF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S I    + +   A K AQ +  DVL++DTAGRLH +  +M      I+VL++     
Sbjct: 160 FPSTIDDKPSDIVASAKKYAQKQFFDVLLVDTAGRLHIDEQMM----DEIKVLQK--KVN 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+D+ TGQ+A    + F      TG+I+TK+DG ARGG  + +      P+ FL
Sbjct: 214 PIETLFVVDSMTGQDAAHTAKAFADALPLTGVILTKIDGDARGGAALSVRHITGKPIKFL 273

Query: 290 GVGEGINDLEPF 301
           GVGE I+ LEPF
Sbjct: 274 GVGEKIDTLEPF 285


>gi|255070283|ref|XP_002507223.1| type II secretory pathway family [Micromonas sp. RCC299]
 gi|226522498|gb|ACO68481.1| type II secretory pathway family [Micromonas sp. RCC299]
          Length = 568

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 134/273 (49%), Gaps = 19/273 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF- 107
           L+ +D+ + V ++ ++ +  K    R  K V+  + L  V   +   L  L   F  D  
Sbjct: 121 LLEADVSLPVVRRFIKNIEQKAIGTRVTKGVNAGQQLTKV---VADELCELMGGFGGDSL 177

Query: 108 -----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                S  P VIL+ G+ GVGKTT  GKL+  +   G   +L A D +R AAI+QLK   
Sbjct: 178 AFKDPSMGPTVILMAGLQGVGKTTACGKLALYLKKQGKDSLLVATDVYRPAAIEQLKRLG 237

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           ++         +  D   +A    ++A+A+ +DV+IIDTAGRL  +  LM    + +R  
Sbjct: 238 EQVKTPVFDMGVRVDPPEVARLGLEKARAEGIDVVIIDTAGRLQVDVHLM----EELRAT 293

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           K     A   +L V+DA TGQ A      F    G TG ++TKMDG  RGG  + +    
Sbjct: 294 K--IATAADEILLVVDAMTGQEAAALTAAFDEAVGITGAVLTKMDGDTRGGAALSVREVS 351

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F GVGE +  LEPF  +  ++ I G  D
Sbjct: 352 GKPIKFTGVGEKMEALEPFYPERMASRILGMGD 384


>gi|170088384|ref|XP_001875415.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650615|gb|EDR14856.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 543

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 143/290 (49%), Gaps = 30/290 (10%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTK------RYAKDVS--------VQRVLYDV 88
           D   +E+   L+ SD+ V     + +++  K        A D S        +Q+ ++D 
Sbjct: 29  DATLKEITAALLESDVNVKFVASLRQKVKAKVKATIESAAADKSKETNRKNLIQKAVFD- 87

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            EL+  ++ P  +P+      +P+VI+ VG+ G GKTT   KL+      G K  +   D
Sbjct: 88  -ELVA-LVDPGVEPYKPK-KGQPNVIMAVGLQGNGKTTTCTKLAVHYQKRGFKSAIVCAD 144

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+ A DQ +  A +    +  S   +D  ++A +   + + ++ DV+I+DT+GR    
Sbjct: 145 TFRAGAFDQTRQSATKAKVAYFGSYTETDPVSIAAQGVAKFKKERFDVIIVDTSGRHKQE 204

Query: 209 SIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           S L   M  IG+ ++         P   + +LDA+ GQ A  Q   F   A    +I+TK
Sbjct: 205 SELFEEMVQIGEAVK---------PDMTVLILDASIGQAAEAQSRAFKESANFGAIIVTK 255

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           MDG A+GGG I  V   K P+ FLGVGE ++DL+ F  + F + + G  D
Sbjct: 256 MDGHAKGGGAISAVAATKTPIIFLGVGEHLHDLDRFSPQPFISKLLGLGD 305


>gi|312885342|ref|ZP_07745004.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mucilaginibacter paludis DSM 18603]
 gi|311302178|gb|EFQ79185.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mucilaginibacter paludis DSM 18603]
          Length = 442

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 115/212 (54%), Gaps = 7/212 (3%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
            +F   P +IL+ G+NG GKTT  GKL+  + +  G K +L AGD +R AAI+QLK+  +
Sbjct: 93  LNFPATPTIILIAGLNGAGKTTFTGKLANFLKTQKGKKPLLVAGDVYRPAAIEQLKVLGE 152

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +       +    D  A+A E    A+    +V+I+DTAGRL  +  +M  I ++   L 
Sbjct: 153 QIGVPVYANLESKDPIAIAREGVALAKQNGNNVVIVDTAGRLSIDEAMMVEIEQVKAALN 212

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 PH +L V+D+ TGQ+A+   ++F+     TG+++TK+DG  RGG  + I     
Sbjct: 213 ------PHEILFVVDSMTGQDAVNTAKVFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVN 266

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+G GE +  L+ F     ++ I G  D
Sbjct: 267 KPIKFIGTGEKMEALDVFHPDRMASRILGMGD 298


>gi|260775500|ref|ZP_05884397.1| signal recognition particle subunit Ffh SRP54 [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608681|gb|EEX34846.1| signal recognition particle subunit Ffh SRP54 [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 463

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 153/307 (49%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V+ +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVKRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQSELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A     DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVL++DTAGRL  +  +M  I ++   +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLLVDTAGRLAIDEQMMGEIQELHSAID------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|184155710|ref|YP_001844050.1| signal recognition particle protein [Lactobacillus fermentum IFO
           3956]
 gi|183227054|dbj|BAG27570.1| signal recognition particle protein [Lactobacillus fermentum IFO
           3956]
          Length = 484

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 147/282 (52%), Gaps = 20/282 (7%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96
           +RE + ++   L+ +D+   V +  V+ +  K    +V       Q+++  V++ + +M+
Sbjct: 36  LRETMREIRLALLEADVNFKVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVNDELTEMM 95

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAI 155
              + P N   +H P VI++VG+ G GKTT  GKL+K +  +   + +  A D +R AAI
Sbjct: 96  GETATPLNKS-AHIPTVIMMVGLQGAGKTTTAGKLAKHLKKEENARPLFIAADVYRPAAI 154

Query: 156 DQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
            QL+  A   S D    E+G+D     +  +  + A+ K  D +IIDTAGRL  +  LM 
Sbjct: 155 TQLQQVA--ASIDVPVFEMGTDVDPVEIVRQGMEVAKEKHNDYVIIDTAGRLQIDEQLME 212

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+  + K      P  +L V+DA TGQNA+   + F      TG+++TK+DG  RGG
Sbjct: 213 ELAKIKELAK------PDEILLVVDAMTGQNAVNTAQGFDDQLDITGVVLTKLDGDTRGG 266

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F+G GE +++L+ F     ++ I G  D
Sbjct: 267 AAMSIRAVTGKPIKFVGEGEKMDNLDVFHPDRMASRILGMGD 308


>gi|27573177|gb|AAO19988.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 296

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 116/196 (59%), Gaps = 2/196 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 101 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 160

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 161 RDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 220

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A
Sbjct: 221 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAA 279

Query: 190 QAKKVDVLIIDTAGRL 205
           +A+ +D+++ DTAGRL
Sbjct: 280 KARGIDIVLADTAGRL 295


>gi|168001070|ref|XP_001753238.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695524|gb|EDQ81867.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 617

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 146/281 (51%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLM 97
           D ++E ++D+   L+ +D+ + V ++ V+ +  K     V V+ V  D  + ++++  L+
Sbjct: 150 DNIKEPMKDIRRALLEADVSLPVVRRFVKSVSEKAIGMGV-VRGVRPDQQLVKVVNDELV 208

Query: 98  PL--SKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            L   +    +F+   P VIL+ G+ GVGKTT  GKL+      G  VM+ A D +R AA
Sbjct: 209 GLMGGEMVGIEFAKSGPTVILMAGLQGVGKTTACGKLALFCKKKGKSVMMVATDVYRPAA 268

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           IDQL     +       +      A +A     + + + +DV+I+DTAGRL  +  +M  
Sbjct: 269 IDQLVTLGKQVEVPVFEAGNQLRPAEIAKRGLAEGKKQGIDVIIVDTAGRLQVDRGMMDE 328

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + ++ +V+       P  VL V+DA TGQ A   V  F+   G TG I+TK+DG +RGG 
Sbjct: 329 LKQIKQVVN------PTEVLLVVDAMTGQEAAGLVASFNLEIGITGAILTKLDGDSRGGA 382

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F+G GEG+  LEPF     ++ I G  D
Sbjct: 383 ALSVKEVSNKPIKFVGEGEGMTALEPFYPDRMASRILGMGD 423


>gi|148652404|ref|YP_001279497.1| signal recognition particle protein [Psychrobacter sp. PRwf-1]
 gi|148571488|gb|ABQ93547.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Psychrobacter sp. PRwf-1]
          Length = 515

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 160/312 (51%), Gaps = 31/312 (9%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  I  S +L +D +++ L ++   L+ +D+ + + +  V+ +  +   
Sbjct: 2   FDTLTERLSGSLRKISGSGQLTEDNIKDTLREVRMALLEADVALPITRDFVKRVKEQALG 61

Query: 77  KDV--------SVQRVLYD-VSELI---HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++V        +  +++YD ++E++   ++ L    KP        P V L+ G+ G GK
Sbjct: 62  QEVLKELAPGQAFVKIVYDELTEMMGSANQQLEMTGKP--------PVVYLLAGLQGAGK 113

Query: 125 TTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT  GKL+K + +    KVML + D +R AAI QL+  A + +A FV S    +   +A 
Sbjct: 114 TTTAGKLAKYLQERHKKKVMLVSADVYRPAAIKQLEQVAAQVNAKFVNSSSDENPIDIAK 173

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A ++A+ +  D+LIIDTAGRLH +  +M  I  +           P   L V+D+ TGQ
Sbjct: 174 RAIEEAKLQYQDILIIDTAGRLHIDEDMMDEIKALTAAAN------PSETLFVVDSMTGQ 227

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A    + F+     TG+I+TK DG ARGG  + +      P+ FLG GE ++ LE F  
Sbjct: 228 DAANTAKAFNDALPLTGVILTKTDGDARGGAALSVRAITDKPIKFLGRGEKLDALEAFHP 287

Query: 304 KDFSAVITGCLD 315
           +  +  I G  D
Sbjct: 288 ERIAQRILGMGD 299


>gi|54310152|ref|YP_131172.1| putative signal recognition particle protein [Photobacterium
           profundum SS9]
 gi|46914593|emb|CAG21370.1| putative signal recognition particle protein [Photobacterium
           profundum SS9]
          Length = 455

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL DD +++ L ++   L+ +D+ + V ++ V+ +  +   
Sbjct: 2   FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  +      P VIL+ G+ G GKTT + KL
Sbjct: 62  SEVSKSLTPGQEFIKIVQAELESVMGESNEALDL-ACQPPAVILMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K V++ + D +R AAI QL+  A     DF  S +      +   A    +
Sbjct: 121 GKVLKEREKKNVLVVSADVYRPAAIKQLETLASDVGIDFFPSSVEQKPVDIVSAAVAHGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRLH + ++M  I  + +         P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVVIVDTAGRLHVDDVMMDEIKDIHKAAN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKVDGDARGGAALSVRYITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|157362996|ref|YP_001469763.1| signal recognition particle protein [Thermotoga lettingae TMO]
 gi|157313600|gb|ABV32699.1| signal recognition particle protein [Thermotoga lettingae TMO]
          Length = 433

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 147/288 (51%), Gaps = 21/288 (7%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE--------ELLTKRYAKDVSVQRVLYD 87
           ++ + +++ VR+ ++  L+ +D+   V ++ ++        E + K +  D    +++ D
Sbjct: 22  LTEKNINEAVRQ-VKLSLLEADVNFKVVKEFIDSVKAKALGEEVLKSFTPDQQFVKIVRD 80

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             ELI+ M    +     +  H P VI++VG+ G GKTT   KL+  +  +G  V+L A 
Sbjct: 81  --ELINIMGKSAA---TLNLRHHPSVIMLVGLQGSGKTTTAAKLANYLRKSGRTVLLVAA 135

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT+R AAIDQL+          +  +   +   +  +A + ++  + + LI DTAGRLH 
Sbjct: 136 DTYRPAAIDQLEKLGKSIQIPVLTGD-RKNPLIIVQQALEYSKNSQYNTLIFDTAGRLHI 194

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  +M  + +    +K+L    P  +L V+DA  GQ+A+     F      TG I+TKMD
Sbjct: 195 DEEMMEELQQ----IKQLS--NPDEILMVVDAMIGQDAVNSALEFDKRLNVTGFIVTKMD 248

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G ARGG ++ I      PV F+GVGE I+  E F     +A I G  D
Sbjct: 249 GDARGGVILSITHITGKPVKFIGVGEKIDAFEQFHPDRVAARILGMGD 296


>gi|317014538|gb|ADU81974.1| signal recognition particle protein [Helicobacter pylori
           Gambia94/24]
          Length = 448

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 154/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++  A  +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKASGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVLI
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLI 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKGIL------TPHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDMFVPERIVGRLMGAGD 291


>gi|238785845|ref|ZP_04629814.1| Signal recognition particle protein [Yersinia bercovieri ATCC
           43970]
 gi|238713258|gb|EEQ05301.1| Signal recognition particle protein [Yersinia bercovieri ATCC
           43970]
          Length = 453

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 114/209 (54%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +   K V++ + D +R AAI QL+  A + S
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQQVS 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++   +    
Sbjct: 157 IDFFPSDVQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQIHGAIN--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I      P+
Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLGVGE    LEPF     ++ I G  D
Sbjct: 271 KFLGVGEKTEALEPFHPDRVASRILGMGD 299


>gi|296109473|ref|YP_003616422.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus infernus ME]
 gi|295434287|gb|ADG13458.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus infernus ME]
          Length = 448

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 148/277 (53%), Gaps = 22/277 (7%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKI--------VEELLTKRYAKDVSVQRVLYDVSE 90
           ++L   V ++++  LI++D+ V +  KI        +EE   K ++K   + +++Y+  E
Sbjct: 24  KKLIKEVVKDIQRALIQADVNVKLVLKITKEIERRALEEEPPKGFSKKEHIIKIVYE--E 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L+ K+L   +KP   +   R +VI++VG+ G GKTT   KL+K +   G +V L A DT+
Sbjct: 82  LV-KLLGEEAKPLKIEPGRR-NVIMLVGIQGSGKTTTAAKLAKYLKKKGYRVGLIAADTY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AA +QLK  A++     +  ++      +  E   +   K VDV+IIDTAGR      
Sbjct: 140 RPAAYEQLKQLAEKIDVP-IYGDLSKKPEDIVKEGLNKF--KNVDVVIIDTAGRHKEEKG 196

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTKMDGT 269
           L+  + ++  +        P  ++ V+D T GQ A  Q + F    G  G +I+TK+DG+
Sbjct: 197 LLEEMKRIKEI------SNPDEIMLVIDGTIGQQARVQAKAFKDAVGEIGSIIVTKLDGS 250

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A+GGG +  V   K P+ F+G GE I+D E F  K F
Sbjct: 251 AKGGGALSAVAETKAPIKFIGTGEKIDDFEEFDPKKF 287


>gi|294495522|ref|YP_003542015.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanohalophilus mahii DSM 5219]
 gi|292666521|gb|ADE36370.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanohalophilus mahii DSM 5219]
          Length = 439

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 148/299 (49%), Gaps = 20/299 (6%)

Query: 25  SLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           S  L++ +  ++ + R+D+     V ++++  L++SD+ V +  ++ + +  +   +DV 
Sbjct: 7   SNSLQDALKKLVGAGRIDERTVNDVVKDIQRALLQSDVNVKMVMQLSKSIKERALDEDVP 66

Query: 81  V-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
                   V  ++++ LM +      D   +P  I+++G+ G GKTT   KL++     G
Sbjct: 67  QGMNPREHVIRIVYEELMKIVGE-GTDIPLKPQKIMMIGLQGSGKTTTTAKLARYFQRKG 125

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
           LK  +   DTFR  A  QLK   +  +  F   E   DA  +       A+  K DV II
Sbjct: 126 LKPAVVCADTFRPGAYQQLKTLCESLNVAFYGEEGNPDAVGIVERGL--AEIDKYDVKII 183

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVA 256
           DTAGR    S L   I +M R+      HA   P   L VLDA  GQ A  Q + F+   
Sbjct: 184 DTAGRHSLESDL---IDEMERI------HAISSPDYKLLVLDAGIGQQASEQAKAFNDSV 234

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +G++++K+DGTA+GGG +  V      + F+GVGE   DLE F A  F + + G  D
Sbjct: 235 GISGVVISKLDGTAKGGGAMSAVAATDSSIAFIGVGETPQDLEKFEADRFISRLLGMGD 293


>gi|329121418|ref|ZP_08250043.1| signal recognition particle protein [Dialister micraerophilus DSM
           19965]
 gi|327469708|gb|EGF15175.1| signal recognition particle protein [Dialister micraerophilus DSM
           19965]
          Length = 452

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 143/294 (48%), Gaps = 23/294 (7%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           KL K F     K K   +DI       DG   E+   L+ +D+   VA+  + ++  K  
Sbjct: 9   KLQKAFKDLRGKGKLSESDI-------DGALREVRKALLEADVNFKVAKDFIAQVREKAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V + + ++L           S     I++VG+ G GKTT +GK
Sbjct: 62  GEEVFGSLKPDQTVIKIVRDELTQLLGGTQSKITMS-SKGLTTIMLVGLQGAGKTTTVGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G   +LAA D +R AAI QL++ A +        E   +  A+A EA + A+
Sbjct: 121 LALMLKKKGKNPLLAACDVYRPAAIKQLQVLASQVGVSAFTIEGSKEPVAIAKEAVEYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV++IDTAGRL  +++LM  + K I+         PH +L VLD+ TGQ+A+   +
Sbjct: 181 KHNNDVILIDTAGRLTIDTVLMEEL-KNIKA-----AVMPHEILLVLDSMTGQDAVTTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE----GINDLEP 300
            F    G  G ++TKMDG ARGG  + I      P+  +GV E    G+ D  P
Sbjct: 235 AFDESLGIDGTVLTKMDGDARGGAALSIKAVTGKPIKLIGVSEKLDGGLEDFYP 288


>gi|297619646|ref|YP_003707751.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Methanococcus voltae A3]
 gi|297378623|gb|ADI36778.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanococcus voltae A3]
          Length = 450

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 147/288 (51%), Gaps = 24/288 (8%)

Query: 39  RRLDDGVREELEDLLIRSDIGVA--------VAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           ++L   V ++++  LI+SD+ V         + +K +EE   K   K   + +++Y+  E
Sbjct: 24  KKLIKEVIKDIQKALIQSDVNVKLVLKMSKDIEKKAIEENPPKGLTKKEHIIQIVYN--E 81

Query: 91  LIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           L+    +  ++P   D    +  +IL+VG+ G GKTT   KL++ +   GLK  L A D 
Sbjct: 82  LVQ---LIGNEPQKLDLDPSKKSIILLVGIQGSGKTTSSAKLARLIQKRGLKPALIAADV 138

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAA-ALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           +R AA  QL+  A++ +      E  +     +A +   +   KK DV IIDTAGR    
Sbjct: 139 YRPAAYKQLQQLAEKINVPLYGDETRTKTPIEIAKDGLNKL--KKADVFIIDTAGRHKEE 196

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMD 267
           S L+  + ++       D   P  ++ V+D T GQ A  Q + F  AV     +++TK+D
Sbjct: 197 SGLLTEMKEL------KDELNPKEIVLVIDGTLGQQAKNQAKAFKDAVEDIGSILVTKLD 250

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G+A+GGG +  V     P+ F+G GEG++DLE F  K F + + G  D
Sbjct: 251 GSAKGGGALSAVAEINAPIKFIGTGEGVDDLETFEPKKFISRLLGMGD 298


>gi|294670244|ref|ZP_06735137.1| signal recognition particle protein [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307981|gb|EFE49224.1| signal recognition particle protein [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 455

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 114/210 (54%), Gaps = 14/210 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           P V+L+ G+ G GKTT +GKL+K  K  D   K+++ + D +R AAI+QL++ A++   D
Sbjct: 100 PAVVLMAGLQGAGKTTTVGKLAKLLKTVDKKKKILVVSADVYRPAAIEQLRLLAEQVQVD 159

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F  S+       +A  A   A+    DVL++DTAGRL  +  +M  I  +         H
Sbjct: 160 FFPSDTTQKPVDIALAALNHAKRGFYDVLMVDTAGRLAIDQEMMDEIKAL---------H 210

Query: 229 A---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           A   P   L V+DA  GQ+A+   + F+     TG+++TKMDG +RGG  + +      P
Sbjct: 211 AAVNPVETLFVVDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGDSRGGAALSVRQVTGKP 270

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+GVGE I+ LE F     ++ I G  D
Sbjct: 271 IKFIGVGEKIDGLEAFHPDRIASRILGMGD 300


>gi|223993863|ref|XP_002286615.1| SRP54, signal recognition particle 54 kDa protein 2-like protein
           [Thalassiosira pseudonana CCMP1335]
 gi|220977930|gb|EED96256.1| SRP54, signal recognition particle 54 kDa protein 2-like protein
           [Thalassiosira pseudonana CCMP1335]
          Length = 451

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 145/307 (47%), Gaps = 28/307 (9%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVEELLTKRYAKDV 79
           KL+    D I++  L+ G+  E+   LI SD+ V +        QK V  L++   A   
Sbjct: 16  KLQSPSGDAITAETLN-GILSEISRALIESDVNVKLVMTLRSNIQKKVGALVSSDNANSA 74

Query: 80  S--------VQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVI 128
           +        VQR + D  EL   ML P  +     +     +P++IL VG+ G GKTT I
Sbjct: 75  ANNANIARLVQRAVVD--ELT-SMLTPNGENATKAYVMKRGKPNIILFVGLQGAGKTTSI 131

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            K +      G K  +   DTFR+ A DQLK  A +    F  S   +D   +A E  ++
Sbjct: 132 AKYAHYYQRKGWKTAMVCADTFRAGAFDQLKQNATKLRIPFYGSYTEADPVLIAEEGVER 191

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
             +   +++I+DT+GR      L   + ++   ++      P + + V+DAT GQ    Q
Sbjct: 192 FISDGYEIIIVDTSGRHRQEETLFEEMQEISAAVR------PDNTIFVMDATQGQAVYDQ 245

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              FH       +I+TK+DG A+GGG +  V     P+ FLG GE   DL+PF AK F +
Sbjct: 246 ALAFHGAVNVGSVIVTKLDGHAKGGGALSAVSATGSPIVFLGSGERFEDLDPFNAKSFVS 305

Query: 309 VITGCLD 315
            + G  D
Sbjct: 306 KLLGFGD 312


>gi|312381041|gb|EFR26883.1| hypothetical protein AND_06742 [Anopheles darlingi]
          Length = 560

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 150/307 (48%), Gaps = 21/307 (6%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-- 72
           RK+T    S S         II+   LD  ++E +   L+ +D+ + + +K+ E + +  
Sbjct: 8   RKITNALHSLSK------ATIINEEVLDSMLKE-ICTALLEADVNIRLVKKLRENVRSVI 60

Query: 73  --KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                A  ++ +R++      EL+ K++ P  KP+      RP+VI+ VG+ G GKTT  
Sbjct: 61  DFDEMAGGLNKRRMIQSAVFKELV-KLVDPGVKPYQ-PIKGRPNVIMFVGLQGSGKTTTC 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +  + 
Sbjct: 119 TKLAYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVVIAQDGVEM 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +  + +I+DT+GR      L     +M+ V   +DP    +++ V+DAT GQ    Q
Sbjct: 179 FKKEGFEFIIVDTSGRHKQEESLFE---EMLAVANAVDPD---NIIFVMDATIGQACEAQ 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F +
Sbjct: 233 AKAFKEKVDIGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKTKPFIS 292

Query: 309 VITGCLD 315
            + G  D
Sbjct: 293 KLLGMGD 299


>gi|260435394|ref|ZP_05789364.1| signal recognition particle protein [Synechococcus sp. WH 8109]
 gi|260413268|gb|EEX06564.1| signal recognition particle protein [Synechococcus sp. WH 8109]
          Length = 486

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 144/285 (50%), Gaps = 26/285 (9%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLM--- 97
           DG  +++   L+ +D+ + V ++ V E+  K    +V V+ V  D    +++H+ L+   
Sbjct: 28  DGALKDVRRALLEADVSLPVVKEFVAEVRDKAVGAEV-VRGVSPDQKFIQVVHEQLVEVM 86

Query: 98  -----PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                PL+K      +  P V+L+ G+ G GKTT   KL   + D G + ++   D +R 
Sbjct: 87  GGDNAPLAKA-----AEAPTVVLMAGLQGAGKTTATAKLGLHLKDQGRRALMVGADVYRP 141

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           AAI+QLK        D     +G++A    +A     +A+ +  D L++DTAGRL  ++ 
Sbjct: 142 AAIEQLKTLG--AQIDVEVFSLGAEAKPEDIAAAGLAKAKEEGFDTLLVDTAGRLQIDTE 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M    +M+R+   + P     VL V+D+  GQ A      FH   G TG ++TK+DG +
Sbjct: 200 MME---EMVRIRTAVQPD---EVLLVVDSMIGQEAAELTRAFHDQVGITGAVLTKLDGDS 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 254 RGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298


>gi|325111176|ref|YP_004272244.1| signal recognition particle subunit FFH/SRP54 (srp54) [Planctomyces
           brasiliensis DSM 5305]
 gi|324971444|gb|ADY62222.1| signal recognition particle subunit FFH/SRP54 (srp54) [Planctomyces
           brasiliensis DSM 5305]
          Length = 495

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 153/302 (50%), Gaps = 10/302 (3%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           ++KG       L+ G  +  + R     V++ L +  +  DI  +  + + E+ L ++  
Sbjct: 5   ISKGLGDALGNLQRGRINETNIRESMQTVKQSLLEADVSYDIVDSFVKTVTEQSLGEKVL 64

Query: 77  KDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           K +   ++++  V++ +  ++ P+    ++  S    VI++ G+ G GKTT  GKL++ +
Sbjct: 65  KSLKPGEQIVGIVNQELINLMGPIDHSLHFKQSG-ISVIMMCGLQGSGKTTTCGKLARML 123

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQA-QAKK 193
              G K ML A D  R AAI+QLK    +        +  G++  A+     K+A Q   
Sbjct: 124 QSEGRKPMLVAADLQRPAAIEQLKTVGAQVGVPVHAEDPKGTNPVAVCQNGLKKAKQQGD 183

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +D +I+DTAGRLH +  LM  +  + R L+      P  VL V DA TGQ+A+R  + F+
Sbjct: 184 IDTVILDTAGRLHIDDELMKELASIDRKLQ------PDQVLLVTDAMTGQDAVRSAKAFN 237

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                 G I+TK+DG  RGG  + +     +P+ F+GVGE ++ LE F     ++ I G 
Sbjct: 238 ESLELDGAILTKLDGDTRGGAALSVKQVTGVPIKFIGVGEQLDKLEAFHPDRMASRILGM 297

Query: 314 LD 315
            D
Sbjct: 298 GD 299


>gi|329929595|ref|ZP_08283302.1| signal recognition particle protein [Paenibacillus sp. HGF5]
 gi|328936240|gb|EGG32692.1| signal recognition particle protein [Paenibacillus sp. HGF5]
          Length = 460

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 135/267 (50%), Gaps = 10/267 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L+ +D+   V +  V ++  K   K+V    +   V+ D+       LM  S+      +
Sbjct: 39  LLEADVNFKVVKDFVSKVKEKAIGKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKSN 98

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P VI++ G+ G GKTT  GKL+K +     + +L AGD +R AAI QL++  ++ +  
Sbjct: 99  KPPTVIMMAGLQGAGKTTTSGKLAKLLQKQNSRPLLVAGDIYRPAAIKQLEVLGNQINVP 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                  +    +A +  + A+    D +IIDTAGRLH +  LM  + ++  V+      
Sbjct: 159 VFSLGDKTSPVEIAKQGLQHAKDNGHDYVIIDTAGRLHVDEELMEELKQIHSVVN----- 213

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  VL V+DA TGQ+A+   E F+     TG+++TK+DG  RGG  + +      P+ F
Sbjct: 214 -PDEVLLVVDAMTGQDAVNVAESFNQQLTLTGVVLTKLDGDTRGGAALSVKAVTGCPIKF 272

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
             +GE I+ LEPF  +  ++ I G  D
Sbjct: 273 AALGEKIDALEPFHPERMASRILGMGD 299


>gi|167630250|ref|YP_001680749.1| signal recognition particle protein [Heliobacterium modesticaldum
           Ice1]
 gi|167592990|gb|ABZ84738.1| signal recognition particle protein [Heliobacterium modesticaldum
           Ice1]
          Length = 454

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+++VG+ G GKTT + KL   +   G + +L A D +R AA+ QL++  ++      
Sbjct: 100 PTVVMLVGLQGAGKTTTVSKLGLFLRKQGRRPLLVACDVYRPAAVKQLQVLGNQLDLPVF 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G     +A  A + A A   D++++DTAGRLH N  LM  + K I+   R     P
Sbjct: 160 SMGTGVSPVDIAKGAVEHAVAHGRDMVLLDTAGRLHINEELMEEL-KSIKSAVR-----P 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H +L V+DA TGQ+A+   E FH   G  G+I+TK+DG ARGG  + +      P+ F G
Sbjct: 214 HEILLVVDAMTGQDAVNVAESFHGQLGLDGVILTKLDGDARGGAALSVKAVTGCPIKFAG 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           +GE  + LE F     ++ I G  D
Sbjct: 274 MGEKPDALEQFHPDRMASRILGMGD 298


>gi|294950295|ref|XP_002786558.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
 gi|239900850|gb|EER18354.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
          Length = 533

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 147/296 (49%), Gaps = 20/296 (6%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---------VEELLTKRYAKDV 79
           K G   +I    LD+ ++E +   L+++D+ V    ++         +EEL      K  
Sbjct: 16  KLGKATVIDEAVLDECLKE-ISTALLQADVNVRYVAELRKNIKRTVDLEELAAPGSNKQR 74

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
            +Q+ +  V++L+ +ML P  +P+      +P+VI+ VG+ G GKTT   K +      G
Sbjct: 75  VIQKAV--VNQLV-EMLSPDKEPYKPK-KGQPNVIMFVGLQGSGKTTSCTKYAHYYQRKG 130

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            +V L   DTFR+ A DQLK  A +    F  S + SD   +A E     +  K D++I+
Sbjct: 131 WRVALVCADTFRAGAFDQLKQNATKVKIPFYGSYVESDPVKIAKEGVDLFKMDKYDIIIV 190

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DT+GR    + L     +M +V K ++   P  ++ V+D+  GQ    Q + F       
Sbjct: 191 DTSGRHRQEAAL---FDEMTQVAKAVN---PDEIVFVMDSHIGQACFEQAKAFKDTVSVG 244

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +++TK+DG A+GGG +  V     P+ F+G GE  ++ EPF A+ F   + G  D
Sbjct: 245 SVVVTKLDGHAKGGGALSAVAATDSPIIFIGTGEHFDEFEPFDAQSFVQRLLGLGD 300


>gi|159040882|ref|YP_001540134.1| GTP-binding signal recognition particle [Caldivirga maquilingensis
           IC-167]
 gi|157919717|gb|ABW01144.1| GTP-binding signal recognition particle SRP54 G- domain [Caldivirga
           maquilingensis IC-167]
          Length = 449

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 142/287 (49%), Gaps = 24/287 (8%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--------YDVSE 90
           ++ +R  L DL   LIR+D+ V    K+V EL TK   ++    + L        Y V  
Sbjct: 23  EETLRSILRDLQRALIRADVDV----KLVYEL-TKSIEEEFKEAKELPPGLTAKDYLVYL 77

Query: 91  LIHKM--LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           L  K+  L+   K  + +   +P+++++VG  G GKTT  GKL+      GLKV L   D
Sbjct: 78  LYRKLTDLLGGDKEPDVEVKTKPYILMLVGTEGSGKTTTAGKLANFYIKRGLKVGLIETD 137

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T R  A DQL+  A+R  A F       +A  +A     +  + K D++IIDTAGR  N 
Sbjct: 138 TIRPGAFDQLRQLAERVKAMFFGDPSLGNAVNIAKAGLSRMISSKADLIIIDTAGRHRNE 197

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             L++ + ++   +K      P+ V+ V+DAT G+    Q E F        + +TK+D 
Sbjct: 198 EELLSEVKEIYEAVK------PNEVMLVVDATNGKQVGAQAEAFSKYVPVNSIFITKLDS 251

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TA+GGG +   V     + F+G GE I D+E F  + F A + G  D
Sbjct: 252 TAKGGGALVSAVKTGARIKFIGNGEDIEDIEVFNPRRFVARLMGMGD 298


>gi|114799508|ref|YP_758770.1| signal recognition particle protein [Hyphomonas neptunium ATCC
           15444]
 gi|114739682|gb|ABI77807.1| signal recognition particle protein [Hyphomonas neptunium ATCC
           15444]
          Length = 491

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 148/285 (51%), Gaps = 17/285 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIH 93
           D  V E L ++   L+ +D+ + V +  VE++  +   ++V  SV   Q+V+  V + + 
Sbjct: 24  DKDVSEALREIRVALLEADVALPVVKDFVEKVRERAVGEEVIRSVKPGQQVIKIVYDALV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRS 152
            ML    +  +      P V+++ G+ G GKTT  GK++K+++D G K V+LA+ D  R 
Sbjct: 84  DMLGSDEEENHLRVDTPPAVVMMAGLQGSGKTTTTGKIAKRLADRGKKKVLLASLDVRRP 143

Query: 153 AAIDQLKIWADRTSADFVCSEI--GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           AA++QL I A +         I  G   A +A  A + A+    DVL +DTAGR   +  
Sbjct: 144 AAMEQLAILAKQAGETVSSLPIIPGQLPADIARRALQAAKIGGYDVLFLDTAGRTSIDEQ 203

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M+   ++  +        P  VL V DA TGQ+A+     FH     TGL++T+MDG  
Sbjct: 204 MMSEAAEIAAIAN------PSEVLLVADALTGQDAVETARRFHERLPLTGLVLTRMDGDG 257

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + +     +P+ FLGVGE ++ L+ F AK  +  I G  D
Sbjct: 258 RGGAALSMRAVTGLPIKFLGVGEKLDGLDAFDAKRVAGRILGQGD 302


>gi|27573167|gb|AAO19983.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573175|gb|AAO19987.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 311

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 115/196 (58%), Gaps = 2/196 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMDATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   +    G D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQTTG-DSAAVCFDAVQAA 294

Query: 190 QAKKVDVLIIDTAGRL 205
           +A+ +D+++ DTAGRL
Sbjct: 295 KARGIDIVLADTAGRL 310


>gi|15612144|ref|NP_223796.1| putative signal recognition particle protein [Helicobacter pylori
           J99]
 gi|11387213|sp|Q9ZK62|SRP54_HELPJ RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|4155673|gb|AAD06659.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
           J99]
          Length = 448

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 154/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++  A  +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKAGGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVLI
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFHEENKSVKEIANNALKRAKEAQFDVLI 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ F+ +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFMPERIVGRLMGAGD 291


>gi|297544730|ref|YP_003677032.1| signal recognition particle protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842505|gb|ADH61021.1| signal recognition particle protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 446

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VI++VG+ G GKTT  GKL+  +   G   +L A D  R AAI QL++     +    
Sbjct: 101 PAVIMMVGLQGSGKTTACGKLANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVF 160

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                ++   +A  +   A++   DV+IIDTAGRLH +  LM  +  + R ++      P
Sbjct: 161 TMGDKANPVDIAKASIDYARSHNSDVIIIDTAGRLHIDEELMEELVNIKRAVQ------P 214

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+DA TGQ+A+     F+     TG+I+TK+DG  RGG  + I    + P+ ++G
Sbjct: 215 DEILLVVDAMTGQDAVNVASSFNERLDITGVILTKLDGDTRGGAALSIKAVTQKPIKYVG 274

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE + DLEPF     ++ I G  D
Sbjct: 275 TGEKLTDLEPFYPNRMASRILGMGD 299


>gi|89069747|ref|ZP_01157083.1| signal recognition particle protein [Oceanicola granulosus
           HTCC2516]
 gi|89044693|gb|EAR50804.1| signal recognition particle protein [Oceanicola granulosus
           HTCC2516]
          Length = 498

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 140/272 (51%), Gaps = 18/272 (6%)

Query: 53  LIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           L+ +D+ + VA++ ++ +        +TK       V ++++D  ELI  +L     P  
Sbjct: 38  LLEADVSLPVAREFIKAVEKQATGAAVTKSVTPGQQVIKIVHD--ELIG-VLQGEGDPGK 94

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWAD 163
               + P  IL+VG+ G GKTT   KL+K++ D  G +V++A+ D  R AA++QL I   
Sbjct: 95  LKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKDREGKRVLMASLDVNRPAAMEQLAILGQ 154

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +   D +    G D  A+A  A  QA     DV ++DTAGRLH +  L+A    +     
Sbjct: 155 QIGVDTLPIVKGEDPVAIARRAKTQASLGGYDVYMLDTAGRLHIDHELIAQAAAV----- 209

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             D   P   L V+D  TGQ+A+   E F    G +G+++T+MDG  RGG  + +     
Sbjct: 210 -RDVANPRETLLVVDGLTGQDAVNVAEEFDDKIGVSGVVLTRMDGDGRGGAALSMRAVTG 268

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+G+GE ++ +E F A+  +  I G  D
Sbjct: 269 KPIRFVGLGERMDAIEEFHAERIAGRILGMGD 300


>gi|167461706|ref|ZP_02326795.1| signal recognition particle [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 432

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P ++++VG+ G GKTT  GKL+K ++    K +L A D +R AAI QL++  ++      
Sbjct: 101 PSIVMMVGLQGAGKTTTTGKLAKLLTKQNHKPLLVACDIYRPAAIKQLQVLGEQLQVPVF 160

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 +   +A    + A+    D +IIDTAGRLH +  LM  + K +R     +   P
Sbjct: 161 SMGDQVNPVDIAKAGIQHAKDNHYDYVIIDTAGRLHIDESLMEEL-KQVR-----EAVEP 214

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+DA TGQ+A+   E FH     TG+++TK+DG  RGG  I +      P+ F  
Sbjct: 215 DEILLVVDAMTGQDAVNVAESFHKQMELTGVVLTKLDGDTRGGAAISVKAVTGCPIKFAA 274

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           +GE ++ LEPF  +  ++ I G  D
Sbjct: 275 MGEKMDALEPFHPERMASRILGMGD 299


>gi|270264054|ref|ZP_06192322.1| hypothetical protein SOD_f02720 [Serratia odorifera 4Rx13]
 gi|270042247|gb|EFA15343.1| hypothetical protein SOD_f02720 [Serratia odorifera 4Rx13]
          Length = 474

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 115/209 (55%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +   K V++ + D +R AAI QL+  A+   
Sbjct: 118 AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIRQLETLAEGVG 177

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++   +K   
Sbjct: 178 IDFFPSDVKEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK--- 234

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I      P+
Sbjct: 235 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 291

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLGVGE  + LEPF     ++ I G  D
Sbjct: 292 KFLGVGEKTDALEPFHPDRVASRILGMGD 320


>gi|126179907|ref|YP_001047872.1| signal recognition particle protein Srp54 [Methanoculleus
           marisnigri JR1]
 gi|125862701|gb|ABN57890.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanoculleus marisnigri JR1]
          Length = 443

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 143/300 (47%), Gaps = 27/300 (9%)

Query: 28  LKEGITDIISSRRLDDGVREEL-EDL---LIRSDIGVAV----AQKIVEELLTKRYAKDV 79
           LK+ +  +     +D    EEL  DL   L+ +D+ V +    +Q I +  L +   K +
Sbjct: 9   LKDAVKKLAGKTVIDRAAVEELVRDLQRALLSADVNVKLVMHLSQTIKQRALDEEPPKGM 68

Query: 80  SVQ----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            V+    R++Y   EL+  M  P       + +  P  IL+ G+ G GKTT   KL++  
Sbjct: 69  GVREHVLRIVY--QELVRMMGSP------GEVALEPQTILMAGLQGSGKTTTTAKLARYF 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              GL+V +   DTFR  A DQLK   DR S          DA  +  E   + + K  +
Sbjct: 121 QRKGLRVGVICADTFRPGAYDQLKTLCDRISVPCFGDPKEPDALKIVREGLPKYR-KLYE 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+IIDT GR      L+  I  +  +      HA H  L V+DA  GQ A  Q   FH  
Sbjct: 180 VIIIDTQGRHALEENLIEEIVNINEI-----SHAEHRWL-VIDAALGQQASEQARRFHEA 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+++TKMDGTA+GGG +  V   +  + F+G GE I+DLE F    F + + G  D
Sbjct: 234 IGIDGVLVTKMDGTAKGGGALSAVAETQSGIVFIGSGETIDDLERFDPDGFISRLLGMGD 293


>gi|284175659|ref|ZP_06389628.1| Signal recognition particle protein subunit SRP54 (srp54)
           [Sulfolobus solfataricus 98/2]
 gi|261602558|gb|ACX92161.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Sulfolobus solfataricus 98/2]
          Length = 447

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 152/313 (48%), Gaps = 26/313 (8%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67
           L  IR   + F + S   ++ + + I          ++L+  LI SD+ V +   +   +
Sbjct: 2   LENIRDAVRKFLTGSTPYEKAVDEFI----------KDLQKSLISSDVNVKLVFSLTAKI 51

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGK 124
           +E L K     V ++R  + +S +++  L  L    K  N + +  P +I++VGV G GK
Sbjct: 52  KERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGK 109

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL+      G KV L A D +R AA DQL    ++            +   +A +
Sbjct: 110 TTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKK 169

Query: 185 AFKQAQAKKVDVLIIDTAGR--LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                   K+D++I+DTAGR      + L+  + +M  VLK      P  V+ V+DA+ G
Sbjct: 170 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK------PDDVILVIDASIG 223

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q A      FH  +    +I+TKMDGTA+GGG +  VV     + F+G GE I++LE F 
Sbjct: 224 QKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFN 283

Query: 303 AKDFSAVITGCLD 315
           AK F + I G  D
Sbjct: 284 AKRFVSRILGMGD 296


>gi|15679321|ref|NP_276438.1| signal recognition particle protein Srp54 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|3334341|sp|O27376|SRP54_METTH RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|2622427|gb|AAB85799.1| signal recognition particle protein SRP54 [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 442

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 145/282 (51%), Gaps = 24/282 (8%)

Query: 45  VREELEDL---LIRSDIGVAV----AQKIVEELLTKRYAKDVSVQR----VLYDVSELIH 93
           VRE ++D+   LI+SD+ + +    ++ I E  L +   K ++ +     ++YD  E++ 
Sbjct: 27  VREVIKDIQRALIQSDVNIKLVFNLSKSIEERALNEEPPKGITPKEHIISIVYD--EMV- 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K+L   S     D   +P+ IL +G+ G GKTT IGKL++ +   G  V +   DT+R A
Sbjct: 84  KLLGEKSHELVID--DKPYRILFLGLQGSGKTTTIGKLARYLRKKGFTVGVVCTDTWRPA 141

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++QLK + +             DA  LA +   + Q K  DV+I DTAGR      L+ 
Sbjct: 142 ALEQLKQYTEGQDVSIYGDPQNRDALDLAEKGLARFQKK--DVIIFDTAGRHKEEKDLLR 199

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++  +++      PH  + V+D T GQ A  Q   F        +I+TK+DG+A+GG
Sbjct: 200 EMEELSAIVE------PHEAILVIDGTIGQQAREQALAFRKATDIGSIIVTKLDGSAKGG 253

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +  V     P+ F+G GE I+DLE F  + F + + G  D
Sbjct: 254 GALSAVAEIGAPIKFIGTGERIDDLEVFDPERFISRLLGMGD 295


>gi|124515662|gb|EAY57171.1| Signal recognition particle protein [Leptospirillum rubarum]
 gi|206602282|gb|EDZ38764.1| Signal recognition particle protein [Leptospirillum sp. Group II
           '5-way CG']
          Length = 444

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 151/292 (51%), Gaps = 24/292 (8%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDV- 88
           ++   ++D+ +RE +   L+ +D+ + V +   E+L T+    +V       Q VL +V 
Sbjct: 21  LLGEAQVDETLRE-IRVALLEADVNLDVVKSFTEQLRTRLKGAEVKEGLTPPQTVLKEVF 79

Query: 89  SELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
            E++H +     +  N   S +P  VI+++G+ G GKTT   KL+     +G +V+L A 
Sbjct: 80  DEVVHLLG---DQKANLQLSSKPPTVIMLMGLQGSGKTTTAAKLAYHFRQSGRRVLLVAS 136

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD----VLIIDTAG 203
           D  R AA++QLK+  ++ +   V  + G    +   + F + + K ++    V+I+DTAG
Sbjct: 137 DLARLAAVEQLKVLGEQINVPVVAPDEG---LSNPRDMFPKVRKKWIEGMHEVVILDTAG 193

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RL  +  LM  +  +  + K      P   L VLDA TGQ ++   + F    G  G+I 
Sbjct: 194 RLSIDQNLMKELSDLRELYK------PKEALLVLDAMTGQESVHVAKAFDETIGIDGVIF 247

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TK+DG ARGG ++ I      P+ F+GVGE I+ LEPF     ++ I G  D
Sbjct: 248 TKLDGDARGGAILSIRSVMGKPIKFVGVGEKIDKLEPFHPDRMASRIIGMGD 299


>gi|221640546|ref|YP_002526808.1| Signal recognition particle subunit FFH/SRP54 [Rhodobacter
           sphaeroides KD131]
 gi|221161327|gb|ACM02307.1| Signal recognition particle subunit FFH/SRP54 [Rhodobacter
           sphaeroides KD131]
          Length = 505

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 142/269 (52%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+++  K   + V+      Q+V+  V + +  +L    +      
Sbjct: 38  LLEADVSLPVARDFVKKVQEKATGQGVTKSVTPGQQVVKIVHDELVSVLRGEGEADALKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT   KL+K++++  G +V++A+ DT R AA++QL+I   +  
Sbjct: 98  DNPPATILMVGLQGSGKTTTTAKLAKRLAERQGKRVLMASLDTNRPAAMEQLQILGAQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G  A  +A  A  Q      DV+++DTAGRLH + +LM  + + +R     D
Sbjct: 158 VDTLPIVKGESAVQIAKRAKTQGAMGGYDVIMLDTAGRLHIDEVLMEEV-QAVR-----D 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ+A+     F    G +G+++T+MDG  RGG  + +      P+
Sbjct: 212 LAQPRETLLVVDGLTGQDAVNVAAEFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F  +  +  I G  D
Sbjct: 272 RFVGLGEKMDALETFEPERIAGRILGMGD 300


>gi|317484960|ref|ZP_07943844.1| signal recognition particle protein [Bilophila wadsworthia 3_1_6]
 gi|316923765|gb|EFV44967.1| signal recognition particle protein [Bilophila wadsworthia 3_1_6]
          Length = 512

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 157/313 (50%), Gaps = 23/313 (7%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           ESLS   +L+  F S S + +      ++   + DG+RE +   L+ +D+   V ++ VE
Sbjct: 3   ESLSD--RLSSAFRSLSGRAQ------LTEENIRDGLRE-VRLALLEADVNFKVVKEFVE 53

Query: 69  ELLTKRYAKDVSVQRVLYDVSELI---HKMLMPLSKPFNWDFSHR---PHVILVVGVNGV 122
            +  +   +   V++ L    +L+   H  L+ L      + + R   P VI++VG+ G 
Sbjct: 54  RVRERVLGQ--KVEKSLTPTQQLVKAVHDELVTLLGGETTELNLRGAQPGVIMMVGLQGS 111

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GKL+  +    ++  L   D +R AAIDQL+  A +       S        + 
Sbjct: 112 GKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKPVDIV 171

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             A + A+ K+  V+I+DTAGRLH ++ LM  +  +   ++      P  +L V DA TG
Sbjct: 172 RAALEDAKEKQCTVVILDTAGRLHIDAPLMQELVDIKSAVQ------PQEILFVADAMTG 225

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+   E F+     TG+++TKMDG ARGG  + I       V ++GVGE ++DLE F 
Sbjct: 226 QDAVTVAEAFNKDLALTGVVLTKMDGDARGGAALSIKSVTGASVKYVGVGEKLSDLEVFH 285

Query: 303 AKDFSAVITGCLD 315
            +  +  I G  D
Sbjct: 286 PERVAGRILGMGD 298


>gi|119390316|pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
           To A Translating Ribosome
          Length = 432

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 144/309 (46%), Gaps = 28/309 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + VA+  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           K V       + +L  V E + + L     +P+ K  N  F        +VG+ G GKTT
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+      G + +L A DT R AA +QL++  ++     +    G    ++     
Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  
Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 288 AGRILGMGD 296


>gi|218295520|ref|ZP_03496333.1| signal recognition particle protein [Thermus aquaticus Y51MC23]
 gi|3024639|sp|O07347|SRP54_THEAQ RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|2149137|gb|AAB58502.1| Ffh [Thermus aquaticus]
 gi|218244152|gb|EED10678.1| signal recognition particle protein [Thermus aquaticus Y51MC23]
          Length = 430

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 144/309 (46%), Gaps = 28/309 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + VA+  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           K V       + +L  V E + + L     +P+ K  N  F        +VG+ G GKTT
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+      G + +L A DT R AA +QL++  ++     +    G    ++     
Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  
Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 288 AGRILGMGD 296


>gi|238756459|ref|ZP_04617766.1| Signal recognition particle protein [Yersinia ruckeri ATCC 29473]
 gi|238705308|gb|EEP97718.1| Signal recognition particle protein [Yersinia ruckeri ATCC 29473]
          Length = 453

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +   K V++ + D +R AAI QL+  A +  
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQQVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++        
Sbjct: 157 VDFFPSDVQEKPIDIVSRALQQAKLKFFDVLIVDTAGRLHVDEAMMDEIKQI-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE    LEPF     ++ I G  D
Sbjct: 268 KPIKFLGVGEKTEALEPFHPDRIASRILGMGD 299


>gi|238759638|ref|ZP_04620799.1| Cell division protein ftsY [Yersinia aldovae ATCC 35236]
 gi|238702181|gb|EEP94737.1| Cell division protein ftsY [Yersinia aldovae ATCC 35236]
          Length = 120

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 79/111 (71%)

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           +L+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++F+  
Sbjct: 1   MLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKLFNEA 60

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF
Sbjct: 61  VGLTGITLTKLDGTAKGGVIFAIANQFGIPIRYIGVGEGIEDLRPFKADDF 111


>gi|315497247|ref|YP_004086051.1| signal recognition particle protein [Asticcacaulis excentricus CB
           48]
 gi|315415259|gb|ADU11900.1| signal recognition particle protein [Asticcacaulis excentricus CB
           48]
          Length = 520

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 152/291 (52%), Gaps = 21/291 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE--------ELLTKRYAKDVSVQRVLY 86
           ++S + +D+ +RE +   L+ +D+ + V ++ +         E + K       V +++Y
Sbjct: 21  VLSEKDVDEALRE-VRVALLDADVALPVVRQFMTKARELAAGEAIIKAVKPADQVVKIVY 79

Query: 87  DVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVML 144
           D   LI   ++   +P   D +   P VIL+ G+ G GKTT   KL+ ++S     KVM+
Sbjct: 80  D--GLID--MLGGEEPTPIDLAAVPPAVILMAGLQGSGKTTTSAKLALRLSKFERKKVMM 135

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           A+ DT R AA++QLK+  ++   D +    G  A  +   A + A+ +  DVLI+DTAGR
Sbjct: 136 ASLDTRRPAAMEQLKLLGEQVGVDVLPIIAGQSAVEITRRALQSAKLQGYDVLILDTAGR 195

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
              +  LMA   ++  + K      P     V D+ TGQ+A+R  E FHA    TGLI+T
Sbjct: 196 TTLDEALMAEAAEIASLSK------PVETFLVADSLTGQDAVRTAEAFHARLPLTGLILT 249

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++DG  RGG ++ +     +P+ F G GE ++ L+ F A+  +  I G  D
Sbjct: 250 RVDGDGRGGAMLSMRAVTGLPIKFTGSGEKVDALDVFDARRIAGRILGQGD 300


>gi|317493964|ref|ZP_07952381.1| signal recognition particle protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918291|gb|EFV39633.1| signal recognition particle protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 453

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 153/309 (49%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL ++ +++ L ++   L+ +D+ + V +  +  +  K  A
Sbjct: 2   FENLSDRLSRSLRNISGRGRLTEENIKDTLREVRMALLEADVALPVVRDFINRV--KESA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFS---HRPHVILVVGVNGVGKTTVIGK 130
               V + L    E +  +   L+      N + +     P V+L+ G+ G GKTT +GK
Sbjct: 60  VGHEVNKSLTPGQEFVKIVKNELTNAMGEVNTELNLAAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +   K V++ + D +R AAI QL+  A     DF  S++      +   A + A
Sbjct: 120 LGKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQGVGIDFFPSDVKEKPIEIVSRALQHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K  DVLI+DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A 
Sbjct: 180 KQKFYDVLIVDTAGRLHVDEAMMDEIKQV---------HAAINPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     
Sbjct: 231 NTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRV 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|207092729|ref|ZP_03240516.1| signal recognition particle protein (ffh) [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 448

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVLI
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLI 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|254169193|ref|ZP_04876028.1| SRP54-type protein, GTPase domain [Aciduliprofundum boonei T469]
 gi|197621851|gb|EDY34431.1| SRP54-type protein, GTPase domain [Aciduliprofundum boonei T469]
          Length = 348

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 158/313 (50%), Gaps = 33/313 (10%)

Query: 9   ESL-SWIRKLTK-GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           ESL + IRK++K G+   SL +KE + DI  +              L+R+D+ V +A K+
Sbjct: 7   ESLRNTIRKISKAGYVDESL-IKEVVRDIQRA--------------LLRADVEVHLALKL 51

Query: 67  VEEL----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            + +    L ++    +S +  L  +  +  +++  L K    + + +P  +++VG+ G 
Sbjct: 52  SKNVERRALEEKPPSGMSHRDFLIKI--IYEELVAILGK--EKEVALKPQKLMLVGLYGQ 107

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GKL++     GL V L A D  R AA +QLK   ++ +          DA  +A
Sbjct: 108 GKTTTAGKLARYFHKKGLSVALIACDVHRPAAYEQLKQIGEQLNVPVFGIPGEKDARKIA 167

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +A K+   K   V I DT+GR      L+  I  +  +++      P  +  VLDAT G
Sbjct: 168 RDAVKKM--KDYQVQIFDTSGRHALEDDLIEEIKDLKEIIQ------PDEIFLVLDATIG 219

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q A +Q + FH   G TG+I+TKMDG+A+GGG +  V     PV F+G GE + DLE F 
Sbjct: 220 QQAGKQAKAFHDAVGVTGVIITKMDGSAKGGGALSAVAATGAPVVFIGTGEHLEDLEHFN 279

Query: 303 AKDFSAVITGCLD 315
              F + + G  D
Sbjct: 280 PTRFISRLLGMGD 292


>gi|308184893|ref|YP_003929026.1| signal recognition particle protein [Helicobacter pylori SJM180]
 gi|308060813|gb|ADO02709.1| signal recognition particle protein [Helicobacter pylori SJM180]
          Length = 448

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 155/297 (52%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L   + L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---NALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I+    +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGIIYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|322382560|ref|ZP_08056440.1| signal recognition particle-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153476|gb|EFX45881.1| signal recognition particle-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 455

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P ++++VG+ G GKTT  GKL+K ++    K +L A D +R AAI QL++  ++      
Sbjct: 101 PSIVMMVGLQGAGKTTTTGKLAKLLTKQNHKPLLVACDIYRPAAIKQLQVLGEQLQVPVF 160

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 +   +A    + A+    D +IIDTAGRLH +  LM  + K +R     +   P
Sbjct: 161 SMGDQVNPVDIAKAGIQHAKDNHYDYVIIDTAGRLHIDESLMEEL-KQVR-----EAVEP 214

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+DA TGQ+A+   E FH     TG+++TK+DG  RGG  I +      P+ F  
Sbjct: 215 DEILLVVDAMTGQDAVNVAESFHKQMELTGVVLTKLDGDTRGGAAISVKAVTGCPIKFAA 274

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           +GE ++ LEPF  +  ++ I G  D
Sbjct: 275 MGEKMDALEPFHPERMASRILGMGD 299


>gi|332559527|ref|ZP_08413849.1| signal recognition particle protein [Rhodobacter sphaeroides WS8N]
 gi|332277239|gb|EGJ22554.1| signal recognition particle protein [Rhodobacter sphaeroides WS8N]
          Length = 505

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 142/269 (52%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+++  K   + V+      Q+V+  V + +  +L    +      
Sbjct: 38  LLEADVSLPVARDFVKKVQEKATGQGVTKSVTPGQQVVKIVHDELVSVLRGEGEADALKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT   KL+K++++  G +V++A+ DT R AA++QL+I   +  
Sbjct: 98  DNPPATILMVGLQGSGKTTTTAKLAKRLAERQGKRVLMASLDTNRPAAMEQLQILGAQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G  A  +A  A  Q      DV+++DTAGRLH + +LM  + + +R     D
Sbjct: 158 VDTLPIVKGESAVQIAKRAKTQGSMGGYDVIMLDTAGRLHIDEVLMDEV-QAVR-----D 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ+A+     F    G +G+++T+MDG  RGG  + +      P+
Sbjct: 212 LAQPRETLLVVDGLTGQDAVNVAAEFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F  +  +  I G  D
Sbjct: 272 RFVGLGEKMDALETFEPERIAGRILGMGD 300


>gi|317012929|gb|ADU83537.1| signal recognition particle protein [Helicobacter pylori
           Lithuania75]
          Length = 448

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVLI
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLI 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|18655505|pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
 gi|18655506|pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
 gi|18655507|pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
 gi|48425476|pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
           With The Elongation-Arrested Ribosome
          Length = 296

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 144/309 (46%), Gaps = 28/309 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + VA+  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           K V       + +L  V E + + L     +P+ K  N  F        +VG+ G GKTT
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+      G + +L A DT R AA +QL++  ++     +    G    ++     
Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  
Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 288 AGRILGMGD 296


>gi|313618322|gb|EFR90367.1| signal recognition particle-docking protein FtsY [Listeria innocua
           FSL S4-378]
          Length = 139

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 85/124 (68%)

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL VLDATTG
Sbjct: 3   FDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLVLDATTG 62

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE ++DL+ F 
Sbjct: 63  QNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMDDLQAFD 122

Query: 303 AKDF 306
           A ++
Sbjct: 123 ANEY 126


>gi|116515177|ref|YP_802806.1| hypothetical protein BCc_245 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257031|gb|ABJ90713.1| protein component of signal recognition particle (SRP) [Buchnera
           aphidicola str. Cc (Cinara cedri)]
          Length = 448

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 121/215 (56%), Gaps = 10/215 (4%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIW 161
           FN+ F ++ ++  V+G  GVGKTT   KL+  ++    K +L  + D +R AAI QLK  
Sbjct: 93  FNFLF-NQLNICTVIGQQGVGKTTSTAKLAYLLTKKYKKKVLVVSTDIYRPAAIVQLKRL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            ++T A+F  S +      +   A K+A+ KK DVL+IDTAGRLHNNS       K I+ 
Sbjct: 152 IEKTKANFFPSVVTQKIMTIIKSAIKEAKRKKYDVLLIDTAGRLHNNS-------KKIQE 204

Query: 222 LKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           LK++  +  P+  L ++D+  GQ+++  +  F+     +G+I+TK+D   RGG  + I  
Sbjct: 205 LKKIQEYTQPNETLLIIDSMIGQDSINLINKFNKEFNLSGIILTKLDSDTRGGVALSIRT 264

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             K P+ ++G GE I DL+ F  +  +  I G  D
Sbjct: 265 LTKKPIKYIGTGEKIYDLQIFHPERIAKRILGMGD 299


>gi|114763706|ref|ZP_01443100.1| signal recognition particle protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114543707|gb|EAU46720.1| signal recognition particle protein [Roseovarius sp. HTCC2601]
          Length = 502

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 148/286 (51%), Gaps = 21/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSE 90
           +D VR  L ++   L+ +D+ + VA++ ++ +        +TK       V ++++D  E
Sbjct: 24  EDDVRTALREVRVALLEADVSLPVARQFIKAVEKKATGAAVTKSVTPGQQVVKIVHD--E 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT 149
           LI  +L    +P +      P  IL+VG+ G GKTT   KL++++ +  G KV++A+ D 
Sbjct: 82  LIA-VLAGEGEPGSLRVDSPPAPILMVGLQGGGKTTTTAKLARRLKERDGKKVLMASLDV 140

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            R AA++QL I   +   D +    G D  A+A  A  QA     DV ++DTAGRL  + 
Sbjct: 141 NRPAAMEQLAILGTQIGVDTLPIVKGEDPVAIAKRAKTQAGLGGYDVYMLDTAGRLSIDE 200

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LMA + + +R     D   P   L V+D  TGQ+A+   E F    G TG+++T+MDG 
Sbjct: 201 ELMAQV-EAVR-----DVANPRETLLVVDGLTGQDAVHTAENFDTRIGITGVVLTRMDGD 254

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            RGG  + +      P+ F+G+GE ++ LE F     +  I G  D
Sbjct: 255 GRGGAALSMRAVTGKPIKFVGLGEKMDALETFEPDRVAGRILGMGD 300


>gi|256831064|ref|YP_003159792.1| signal recognition particle protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256580240|gb|ACU91376.1| signal recognition particle protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 492

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 150/308 (48%), Gaps = 24/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F S S +L+     +    RLD     DG+RE +   L+ +D+   V +  VE++  +  
Sbjct: 2   FDSLSDRLESVFKKLRGHGRLDESNIQDGLRE-VRLALLEADVNFKVVKDFVEKVKARAL 60

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + ++L   +   N      P+VI++ G+ G GKTT   K
Sbjct: 61  GQDVLGSLTPGQQVIKIVHEELIELLGGENCALNLS-GKPPYVIMMSGLQGSGKTTSAAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +        L   D +R AAIDQL             S +  +   +  +A + A+
Sbjct: 120 LALFLRRQKYAPYLVPADVYRPAAIDQLTKLGAELGVPVYPSTVDMNPVDICVDAMRDAE 179

Query: 191 AKKVDVLIIDTAGRLHNNSILM---AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            K   V++IDTAGRLH + +LM    GI +  R         P  +L V DA TGQ+A+ 
Sbjct: 180 LKGCSVILIDTAGRLHIDELLMQELVGIKEKCR---------PQEILFVADAMTGQDAVT 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             E F+ V   TG+++TKMDG ARGG  + I      P+ F+G+GE +++LE F     +
Sbjct: 231 VAEKFNEVLDITGVVLTKMDGDARGGAALSIKSITGKPLKFVGMGERLSELEVFHPDRIA 290

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 291 SRILGMGD 298


>gi|40889162|pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
 gi|40889163|pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
 gi|157881432|pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
           Resolution
 gi|157881433|pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
           Resolution
 gi|157883947|pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
           Resolution
 gi|157883948|pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
           Resolution
 gi|157883949|pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
           Resolution
 gi|157883950|pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
           Resolution
          Length = 297

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 144/309 (46%), Gaps = 28/309 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + VA+  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           K V       + +L  V E + + L     +P+ K  N  F        +VG+ G GKTT
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+      G + +L A DT R AA +QL++  ++     +    G    ++     
Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  
Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 288 AGRILGMGD 296


>gi|325283006|ref|YP_004255547.1| signal recognition particle protein [Deinococcus proteolyticus MRP]
 gi|324314815|gb|ADY25930.1| signal recognition particle protein [Deinococcus proteolyticus MRP]
          Length = 459

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 104/204 (50%), Gaps = 6/204 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +V  +VG+ G GKTT  GKL++     G +++L A DT R AA DQL++ A +     + 
Sbjct: 103 NVWFMVGLQGAGKTTSTGKLAQLYKKQGKRILLVAADTQRPAARDQLEVLARQVGVPVLK 162

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            E G   A        Q   K  D++I+DTAGRL  ++ LM  +  + + L+      P 
Sbjct: 163 VEDGESPATTKARMEAQLAEKPADLVIVDTAGRLQVDAALMNELAALKQELQ------PT 216

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             + V+DA TGQ AL   + F      TGLIMTK+DG ARGG  +        P+YF GV
Sbjct: 217 ETMLVVDAMTGQEALNVAQNFDERVAVTGLIMTKLDGDARGGAALSARSVTGRPIYFAGV 276

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
            E +  LEPF     +  I G  D
Sbjct: 277 SEKLTGLEPFYPDRIAGRILGMGD 300


>gi|297587488|ref|ZP_06946132.1| signal recognition particle protein [Finegoldia magna ATCC 53516]
 gi|297574177|gb|EFH92897.1| signal recognition particle protein [Finegoldia magna ATCC 53516]
          Length = 449

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 162/307 (52%), Gaps = 23/307 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+  ++ + +  +L     D    E++  L+ +D+   V +  + ++  K  A
Sbjct: 6   FENLSDKLQNALSKLTNRGKLTEKDIDVAMREVKLALLEADVNYKVVKDFISQV--KERA 63

Query: 77  KDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            D SV       Q+V+  V+E + KM+    +  N     +P VI++ G+ G GKTT  G
Sbjct: 64  IDSSVLESLTPGQQVIKIVNEELTKMMGEKEEKLNVS-PMKPTVIMLCGLQGAGKTTHAG 122

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQ 188
           KL+  + +    V+L A D +R AAI QL++   +   +    E+G ++   ++ +A ++
Sbjct: 123 KLALNLKNKNKSVLLVACDIYRPAAIKQLQVVGGKVGVEVF--EMGQTNPVEISKKAIEE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K +D +IIDTAGRLH +  LM  +  + + +       P  +L V+DA TGQ+A+  
Sbjct: 181 AKKKNIDYVIIDTAGRLHIDDTLMDELKNIKQEVN------PSDILLVVDAMTGQDAVNV 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F+     TG+I+TK+DG ARGG  + I      P+ F+GVGE + DLEPF     ++
Sbjct: 235 AAKFNEDLDITGIILTKLDGDARGGAALSIRQVADKPIKFIGVGEKLGDLEPFHPDRMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|291550677|emb|CBL26939.1| signal recognition particle protein [Ruminococcus torques L2-14]
          Length = 451

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 155/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++ S  RL +D V+  L+++   L+ +D+   V +  ++++  +   
Sbjct: 3   FDSLSEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKGFIKDVQERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +            VI++ G+ G GKTT   KL
Sbjct: 63  QDVMNGLNPGQMVIKIVNEELVKLMGSETTEIKLQPGSAITVIMMAGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G K +L A D +R AAI QL+I A++   +       +  A +A  A + A  
Sbjct: 123 AGKFKLKGKKPLLVACDVYRPAAIKQLEINAEKQGVEMFSMGDKNKPADIAKAAVEHAAK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DTAGRLH +  +MA + ++   ++       H  + V+DA TGQ+A+     
Sbjct: 183 NGNNIVILDTAGRLHVDEDMMAELQEIKEAVE------VHQTILVVDAMTGQDAVNVASS 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FNDKIGIDGVIVTKLDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|15897850|ref|NP_342455.1| Signal recognition particle protein subunit SRP54 (srp54)
           [Sulfolobus solfataricus P2]
 gi|21362961|sp|Q97ZE7|SRP54_SULSO RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|13814155|gb|AAK41245.1| Signal recognition particle protein subunit SRP54 (srp54)
           [Sulfolobus solfataricus P2]
          Length = 447

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 152/313 (48%), Gaps = 26/313 (8%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67
           L  IR   + F + S   ++ + + I          ++L+  LI SD+ V +   +   +
Sbjct: 2   LENIRDAVRKFLTGSTPYEKAVDEFI----------KDLQKSLISSDVNVKLVFSLTAKI 51

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGK 124
           +E L K     V ++R  + +S +++  L  L    K  N + +  P +I++VGV G GK
Sbjct: 52  KERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGK 109

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL+      G KV L A D +R AA DQL    ++            +   +A +
Sbjct: 110 TTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKK 169

Query: 185 AFKQAQAKKVDVLIIDTAGR--LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                   K+D++I+DTAGR      + L+  + +M  VLK      P  V+ V+DA+ G
Sbjct: 170 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK------PDDVILVIDASIG 223

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q A      FH  +    +I+TKMDGTA+GGG +  VV     + F+G GE I++LE F 
Sbjct: 224 QKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFN 283

Query: 303 AKDFSAVITGCLD 315
           AK F + I G  D
Sbjct: 284 AKRFVSRILGMGD 296


>gi|253990679|ref|YP_003042035.1| signal recognition particle protein [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782129|emb|CAQ85293.1| signal recognition particle protein (fifty-four homolog)
           [Photorhabdus asymbiotica]
          Length = 453

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 150/307 (48%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D ++E L ++   L+ +D+ + V +  +     K  A
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFIS--CVKESA 59

Query: 77  KDVSVQRVLYDVSELIH-------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               V + L    E +        K +  ++   N   +  P V+L+ G+ G GKTT + 
Sbjct: 60  VGHEVNKSLTPGQEFVKIVQNELVKAMGEVNSELNLS-TQTPAVVLMAGLQGAGKTTSVA 118

Query: 130 KLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL   +      KV++ + D +R AAI QL+  A     DF  S+       +  +A + 
Sbjct: 119 KLGNFLKGRQKKKVLVVSADVYRPAAIKQLETLAQTVGIDFFPSDAQEKPVDIVMKAVQH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVL++DTAGRLH +  +M  I ++  ++       P   L V+DA TGQ+A   
Sbjct: 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHEIIN------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++
Sbjct: 233 AKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|145351050|ref|XP_001419900.1| IISP family transporter: Signal recognition particle 54 kDa protein
           (SRP54) [Ostreococcus lucimarinus CCE9901]
 gi|144580133|gb|ABO98193.1| IISP family transporter: Signal recognition particle 54 kDa protein
           (SRP54) [Ostreococcus lucimarinus CCE9901]
          Length = 513

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 107/204 (52%), Gaps = 6/204 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +V++ VG+ G GKTT   K +   +  G K  L   DTFR+ A DQLK  A +    F  
Sbjct: 115 NVVMFVGLQGAGKTTTCTKFAHYYAKKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYG 174

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S   SD A +A    K+ + +K D++I+DT+GR      L   + ++  V +      P 
Sbjct: 175 SYTESDPATIAAAGVKRFEEEKSDLIIVDTSGRHKQEEALFEEMREIASVTE------PT 228

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             + V+D++ GQ+A  Q + F +     G+IMTK+DG A+GGG I  V   K P+ F+G 
Sbjct: 229 MTIFVMDSSIGQSASDQAKAFASTVDVGGVIMTKLDGHAKGGGAISAVSETKAPILFIGT 288

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE I +LE F    F + + G  D
Sbjct: 289 GEHIGELEAFETTSFVSKLLGMGD 312


>gi|291556910|emb|CBL34027.1| signal recognition particle subunit FFH/SRP54 (srp54) [Eubacterium
           siraeum V10Sc8a]
          Length = 455

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 145/277 (52%), Gaps = 21/277 (7%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL--S 100
           E++  L+ +D+   V +  V ++  +    +V       Q+V+    +++H  L+ L  +
Sbjct: 34  EVKMALLEADVSFPVVKDFVAKVSERAVGSEVMNSLTPAQQVI----DIVHDELIQLMGT 89

Query: 101 KPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
                DF S  P VI++ G+ G GKTT   KL+K       + +L A D +R AAIDQLK
Sbjct: 90  DTARIDFPSKPPCVIMMCGLQGAGKTTHTAKLAKYFKKQNRRPLLVACDIYRPAAIDQLK 149

Query: 160 IWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +     S D    E+G ++   +A E+ K A+    DV+I+DTAGRLH +  LM  +  +
Sbjct: 150 VVG--ASVDAHVFEMGQTNPVKIAKESIKYAKDNGFDVVILDTAGRLHIDEDLMNELKDI 207

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
              ++      P+ +L V+D+ TGQ+A+   + F+ +   TG+I+TK+DG  RGG  + +
Sbjct: 208 KAEVQ------PNEILLVVDSMTGQDAVNVAKSFNDMLDITGVILTKLDGDTRGGAALSV 261

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +     P+ F GVGE  +DLE F     +  I G  D
Sbjct: 262 LSVTGKPIKFAGVGEKTDDLEQFHPNRMADRILGMGD 298


>gi|225180938|ref|ZP_03734386.1| signal recognition particle protein [Dethiobacter alkaliphilus AHT
           1]
 gi|225168419|gb|EEG77222.1| signal recognition particle protein [Dethiobacter alkaliphilus AHT
           1]
          Length = 448

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 158/306 (51%), Gaps = 21/306 (6%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + S KL++ +  +     ++ + +D  +RE +   L+ +D+   V +  V+ +  +  
Sbjct: 3   FENLSTKLQDTLKRLRGKGKLTEKDVDVALRE-VRLALLEADVNFKVVKDFVKTVKERCL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V++ + K++       N   S  P VI++VG+ G GKTT   K
Sbjct: 62  GAEVLESLTPGQQVIKIVNDELTKLMGESVAKLNQS-SAPPTVIMMVGLQGSGKTTSAAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQA 189
           LS  +       +L A D +R AAI QL++  ++   +    ++G  D    A  A +QA
Sbjct: 121 LSNLLKKKQHSPLLVAADIYRPAAIKQLQVLGEQL--EVPVYQMGQQDPVQTAKAALEQA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D +IIDTAGRLH +  LMA   ++ R+ K ++P     +L V+DA TGQ+A+   
Sbjct: 179 KRNRNDYVIIDTAGRLHIDEELMA---ELTRIEKAVNPD---EILLVVDAMTGQDAVNVA 232

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F    G +G+++TK+DG  RGG  + +      PV F G+GE  +  EPF  +  ++ 
Sbjct: 233 QSFKEKLGLSGVVLTKLDGDTRGGAALSVRAVTGCPVKFAGLGEKTDAFEPFYPERMASR 292

Query: 310 ITGCLD 315
           I G  D
Sbjct: 293 ILGMGD 298


>gi|322418203|ref|YP_004197426.1| signal recognition particle protein [Geobacter sp. M18]
 gi|320124590|gb|ADW12150.1| signal recognition particle protein [Geobacter sp. M18]
          Length = 454

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 151/290 (52%), Gaps = 20/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLY 86
           +++   + D +RE +   L+ +D+   V +  VE++ T+    +V         V ++++
Sbjct: 21  VMTEENVKDALRE-VRLALLEADVNFKVVKDFVEKVRTRAVGTEVLQSLAPGQQVIKIVH 79

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           D  EL+  +LM  S+  + D + +P V I++VG+ G GKTT  GKL++ +     K +L 
Sbjct: 80  D--ELV--LLMGGSEDNSLDLAAKPPVAIMLVGLQGAGKTTSCGKLARYLKGQRKKPLLV 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             D +R AAI+QLK+   +   +   S+       +  +A + A     DV+I DTAGR 
Sbjct: 136 PADVYRPAAIEQLKVLGRQLGIETFDSQSNQKPLDICRDAHRYATLNGFDVIIYDTAGRH 195

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             +  LM  + + IR     D  AP  +L V DA TGQ A+   + F+   G TG+I+TK
Sbjct: 196 QIDDYLMEEL-EGIR-----DELAPREILFVADAMTGQEAVNVAQGFNDRLGITGVILTK 249

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +DG A+GG  + I      PV F+G+GE ++ L+ F A    + I G  D
Sbjct: 250 LDGDAKGGAALSIKAVTGKPVKFVGLGEKLDALDVFHADRLVSRILGMGD 299


>gi|298675575|ref|YP_003727325.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Methanohalobium evestigatum Z-7303]
 gi|298288563|gb|ADI74529.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanohalobium evestigatum Z-7303]
          Length = 440

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 148/300 (49%), Gaps = 28/300 (9%)

Query: 28  LKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--- 80
           L++ +  +++S R+D+     V ++++  L+++D+ V +   + +++  +   ++V    
Sbjct: 10  LQDALKKLVNSGRIDEKSVNDVVKDIQRALLQADVNVQLVMNMSKQIKERALKEEVPSGM 69

Query: 81  -----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                V R++Y   ELI+  ++      N +    P  I+++G+ G GKTT   KL++  
Sbjct: 70  NPREHVIRIVY--QELIN--IIGEGTEINLE----PQTIMMIGLQGSGKTTTTSKLARYF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              GLK  +   DTFR  A  QLK   D+ S  F   E   D+  +      +    K D
Sbjct: 122 QKKGLKPAVICADTFRPGAYHQLKSLCDKNSIPFYGEEGNEDSLGIVERGMDKL--GKYD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           VLIIDTAGR      L+  + ++  + K      P   L VLDA  GQ A  Q   F+  
Sbjct: 180 VLIIDTAGRHSLEQDLIEEMEQINSIAK------PDKKLLVLDAAIGQQASEQARAFNES 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G +G+++TK+DGTA+GGG +  V      + F+GVGE   DLE F    F + + G  D
Sbjct: 234 IGISGVVITKLDGTAKGGGALSAVSETNSSIAFIGVGETSGDLEKFEPDRFISRLLGMGD 293


>gi|319786598|ref|YP_004146073.1| signal recognition particle protein [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465110|gb|ADV26842.1| signal recognition particle protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 456

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 148/292 (50%), Gaps = 23/292 (7%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           ++   + + VRE +   L+ +D+ + V Q +++ +  +   ++V       Q ++  V +
Sbjct: 22  LTESNISEAVRE-VRIALLEADVALPVVQALIQRIKVRAVGQEVLKSLTPGQALIKVVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT 149
            +  ++   +   N +    P V L+ G+ G GKTT +GKL++ + +    KVM+ + D 
Sbjct: 81  ELTAVMGSSATDLNLNVPA-PAVFLMAGLQGAGKTTTVGKLARHLKEKRKKKVMVVSADV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A++T   F  S+ G     +   A   A+   VDVLI+DTAGRL  + 
Sbjct: 140 YRPAAIEQLKTLAEQTGVLFFPSDAGQKPEDIVRAAIADARKSFVDVLIVDTAGRLAIDE 199

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +MA I  +         HA   P   L V+DA TGQ+A    + F      TG+++TK 
Sbjct: 200 AMMAEIKAL---------HAAVNPAETLFVVDAMTGQDAANTAKAFSEALPLTGVVLTKT 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           DG ARGG  + +      P+ F+G GE ++ L+ F     +A I   LD G+
Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKVDGLDVFHPDRVAARI---LDMGD 299


>gi|289578454|ref|YP_003477081.1| signal recognition particle protein [Thermoanaerobacter italicus
           Ab9]
 gi|289528167|gb|ADD02519.1| signal recognition particle protein [Thermoanaerobacter italicus
           Ab9]
          Length = 446

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VI++VG+ G GKTT  GKL+  +   G   +L A D  R AAI QL++     +    
Sbjct: 101 PAVIMMVGLQGSGKTTACGKLANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVF 160

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                ++   +A  +   A++   DV+IIDTAGRLH +  LM  +  + R ++      P
Sbjct: 161 TMGDKANPVDIAKASIDYARSHNSDVIIIDTAGRLHIDEELMEELVNIKRAVQ------P 214

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+DA TGQ+A+     F+     TG+++TK+DG  RGG  + I    + P+ ++G
Sbjct: 215 DEILLVVDAMTGQDAVNVASSFNERLDITGVVLTKLDGDTRGGAALSIKAVTQKPIKYVG 274

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE + DLEPF     ++ I G  D
Sbjct: 275 TGEKLTDLEPFYPNRMASRILGMGD 299


>gi|331223009|ref|XP_003324178.1| signal recognition particle protein [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309303168|gb|EFP79759.1| signal recognition particle protein [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 635

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 8/210 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 118 KPNVIMFVGLQGSGKTTSCTKLAVYYRRKGFKTALVCADTFRAGAFDQLKQNATKAKIPF 177

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH- 228
             S   +D  A++     + + ++ +V+I+DT+GR    +       ++   +K++    
Sbjct: 178 YGSHTETDPIAISTAGVTRFKRERFEVIIVDTSGRHRQET-------ELFEEMKQISAGV 230

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P+  + VLD   GQ A  Q   F   A    +I+TKMDG A+GGG I  V   + P+ F
Sbjct: 231 TPNLTIMVLDGAIGQAAEAQTRAFKEAADFGAIIVTKMDGHAKGGGAISAVAAAQTPIMF 290

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           +G GE ++DLE F  + F + + G  D GE
Sbjct: 291 IGTGEHLHDLERFAPEPFISKLLGMGDIGE 320


>gi|90961606|ref|YP_535522.1| Signal recognition particle protein [Lactobacillus salivarius
           UCC118]
 gi|90820800|gb|ABD99439.1| Signal recognition particle protein [Lactobacillus salivarius
           UCC118]
          Length = 482

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 139/277 (50%), Gaps = 13/277 (4%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL 99
           V  E+   L+ +D+   V +  V+ + ++    +V       Q+++  V+E + K++   
Sbjct: 34  VMREIRLALLEADVNFKVVKDFVKTVRSRAIGAEVLESLTPAQQIVKIVNEELVKVMGEE 93

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158
           + P N   +  P +I++VG+ G GKTT   KL+ K+  +   +  + A D +R AAIDQL
Sbjct: 94  AAPLNKS-AKIPTIIMMVGLQGAGKTTTASKLANKLKKEKNARPFMIAADVYRPAAIDQL 152

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           KI             +  D   +  +  ++A+ KK D +IIDTAGRL  +  LM  +   
Sbjct: 153 KILGKDIDVPVFSLGVDVDPVEIVRQGLEEAKDKKNDYVIIDTAGRLQIDEKLMQELSS- 211

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
              +K L    P  +L  +DA TGQNA+   + F+     TG+++TK+DG  RGG  + I
Sbjct: 212 ---IKEL--AQPDEILLTVDAMTGQNAVEVAKGFNDQLDVTGVVLTKLDGDTRGGAALSI 266

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                 P+ F+G GE + DL+ F     ++ I G  D
Sbjct: 267 RAVTGKPIKFIGQGEKMTDLDVFYPDRMASRILGMGD 303


>gi|292659708|pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
           Pa
          Length = 433

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 152/313 (48%), Gaps = 26/313 (8%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67
           L  IR   + F + S   ++ + + I          ++L+  LI SD+ V +   +   +
Sbjct: 3   LENIRDAVRKFLTGSTPYEKAVDEFI----------KDLQKSLISSDVNVKLVFSLTAKI 52

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGK 124
           +E L K     V ++R  + +S +++  L  L    K  N + +  P +I++VGV G GK
Sbjct: 53  KERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGK 110

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL+      G KV L A D +R AA DQL    ++            +   +A +
Sbjct: 111 TTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKK 170

Query: 185 AFKQAQAKKVDVLIIDTAGR--LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                   K+D++I+DTAGR      + L+  + +M  VLK      P  V+ V+DA+ G
Sbjct: 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK------PDDVILVIDASIG 224

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q A      FH  +    +I+TKMDGTA+GGG +  VV     + F+G GE I++LE F 
Sbjct: 225 QKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFN 284

Query: 303 AKDFSAVITGCLD 315
           AK F + I G  D
Sbjct: 285 AKRFVSRILGMGD 297


>gi|237750758|ref|ZP_04581238.1| signal recognition particle protein [Helicobacter bilis ATCC 43879]
 gi|229373848|gb|EEO24239.1| signal recognition particle protein [Helicobacter bilis ATCC 43879]
          Length = 443

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 143/274 (52%), Gaps = 9/274 (3%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           D   +EL+  L+++D+     ++I+++   K  A  +     L  +S+ + ++L  +S  
Sbjct: 26  DKALDELKKALLKNDVYHKTTKEILQKTKDKTKANGIGRDSFLNALSQSLLEIL-EVSGV 84

Query: 103 FNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           + + ++ +P   IL+ G+ G GKTT   KL+  +     KV+L   D  R AA+ QLK  
Sbjct: 85  YGFTYAQKPPTNILMSGLQGSGKTTTCAKLANYLKARNKKVLLVPCDLQRLAAVTQLKTL 144

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            ++   +   SE  S   ++A EA K AQ    DV+I DTAGRL  +  LM+ + ++ + 
Sbjct: 145 GEQIETEVFHSESNS-PVSVAKEAMKYAQDGLFDVVIYDTAGRLAIDESLMSELAEIKKA 203

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +       PH    V D+ +GQ+ +R  + FH   G +G+I++K D  ++GG  + I   
Sbjct: 204 IN------PHDTFYVADSLSGQDGVRTAQTFHEKIGISGVILSKFDSDSKGGIALSIAYQ 257

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             IP+ F+G+GE I DL+ F+     + + G  D
Sbjct: 258 IGIPLRFMGMGEKIADLDLFMPDRIVSRLMGAGD 291


>gi|171912491|ref|ZP_02927961.1| signal recognition particle protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 479

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 139/283 (49%), Gaps = 10/283 (3%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHK 94
           IS   + D +RE +   L+ +D+   VA+ +VE + TK   ++V         + ++ H 
Sbjct: 22  ISESNISDSMRE-IRMGLLEADVDFKVAKDLVENVKTKALGEEVLRTVSPSQQIVKIFHD 80

Query: 95  MLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            L+ L          + P  +L+ G+NG GKTT  GKL+  +   G K +L A D FR A
Sbjct: 81  ELVVLLGEGTATLDLNPPQRLLIAGLNGAGKTTTSGKLAALLKKQGKKPLLVACDVFRPA 140

Query: 154 AIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           A+ QL +  +         E G  DA   A +  +  + +   + I DTAGR   +  L+
Sbjct: 141 AVKQLVVLGESIGVPVFQPEEGEKDAVRAAKQGLEWVEKQGGGIAIFDTAGRQEVDEGLL 200

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+  V++      P  VL V DA TGQ A+   + F+   G TGL+MTK+DG ARG
Sbjct: 201 EELIKIKNVVQ------PREVLLVADAATGQQAVSVAKTFNDAIGITGLVMTKLDGDARG 254

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G L+ +      PV F+G+GE I+ LE F     +  I G  D
Sbjct: 255 GALLSMKQVTGCPVKFVGMGEKIDQLEVFHPDRMAQRILGMGD 297


>gi|77464634|ref|YP_354138.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodobacter
           sphaeroides 2.4.1]
 gi|77389052|gb|ABA80237.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodobacter
           sphaeroides 2.4.1]
          Length = 505

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 142/269 (52%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+++  K   + V+      Q+V+  V + +  +L    +      
Sbjct: 38  LLEADVSLPVARDFVKKVQEKATGQGVTKSVTPGQQVVKIVHDELVSVLRGEGEADALKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT   KL+K++++  G +V++A+ DT R AA++QL+I   +  
Sbjct: 98  DNPPATILMVGLQGSGKTTTTAKLAKRLAERQGKRVLMASLDTNRPAAMEQLQILGAQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G  A  +A  A  Q      DV+++DTAGRLH + +LM  + + +R     D
Sbjct: 158 VDTLPIVKGESAVQIAKRAKTQGAMGGYDVIMLDTAGRLHIDEVLMDEV-QAVR-----D 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ+A+     F    G +G+++T+MDG  RGG  + +      P+
Sbjct: 212 LAQPRETLLVVDGLTGQDAVNVAAEFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F  +  +  I G  D
Sbjct: 272 RFVGLGEKMDALETFEPERIAGRILGMGD 300


>gi|332638237|ref|ZP_08417100.1| signal recognition particle protein [Weissella cibaria KACC 11862]
          Length = 488

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 142/285 (49%), Gaps = 20/285 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           D  +RE + ++   L+ +D+   V +  V  +  K     V       Q+++  V++ + 
Sbjct: 25  DADLRETMREIRLALLEADVNFTVVKDFVRNVREKAAGAKVLEGLNPAQQIVSIVNDELT 84

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRS 152
            M+     P N      P VI++VG+ G GKTT  GKL+ K+ S+   + ++ A D +R 
Sbjct: 85  AMMGESEVPLNVS-DKIPTVIMMVGLQGAGKTTTAGKLALKLKSEQNARPLMIAADVYRP 143

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           AAIDQLK   ++   D    E+G+DA    +  +   +A   K D + ID AGRL  +  
Sbjct: 144 AAIDQLKTLGEQI--DVPVFEMGTDADPRDIVRQGLAKAAELKSDYVFIDAAGRLQIDEA 201

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +  +  + +      P  +L V+DA TGQNA+   E F+     TG+++TK+DG  
Sbjct: 202 LMQELADVKEIAQ------PDEILLVVDAMTGQNAVETAEGFNERLDVTGVVLTKLDGDT 255

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+G GE + DL+ F     ++ I G  D
Sbjct: 256 RGGAALSIRAVTGKPIKFVGQGEKMTDLDIFYPDRMASRILGMGD 300


>gi|254519213|ref|ZP_05131269.1| signal recognition particle protein [Clostridium sp. 7_2_43FAA]
 gi|226912962|gb|EEH98163.1| signal recognition particle protein [Clostridium sp. 7_2_43FAA]
          Length = 450

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 141/270 (52%), Gaps = 16/270 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +K +  +  K    +V       Q+V+  V+E +  ++       N++ 
Sbjct: 39  LLEADVNFKVVKKFISSVSEKCVGNEVLESLTPAQQVIKIVNEELTNLMGGSESKLNFN- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P VI++VG+ G GKTT+ GKL+ ++     K +L A D +R AAI QL++   +   
Sbjct: 98  SVGPTVIMMVGLQGAGKTTMSGKLALQLRKQNKKPLLVACDIYRPAAIKQLEVVGKQI-- 155

Query: 168 DFVCSEIGS--DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           D    ++G   +   +A      A+    +V+IIDTAGRLH +  LM  + K I+     
Sbjct: 156 DIPVFQMGDKVNPVDIAKAGIAHARENGNNVIIIDTAGRLHIDENLMEEL-KSIK----- 209

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           +   P  +L V+D+ TGQ+A+   E F+     +G+I+TK+DG  RGG  + I    + P
Sbjct: 210 EEVNPQEILLVVDSMTGQDAVNVAESFNNSLDVSGVILTKLDGDTRGGAALSIRSVTEKP 269

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+GVGE ++D E F     S+ I G  D
Sbjct: 270 IKFIGVGEKMSDFEVFYPDRMSSRILGMGD 299


>gi|126463474|ref|YP_001044588.1| signal recognition particle protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105138|gb|ABN77816.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 505

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 142/269 (52%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+++  K   + V+      Q+V+  V + +  +L    +      
Sbjct: 38  LLEADVSLPVARDFVKKVQEKATGQGVTKSVTPGQQVVKIVHDELVSVLRGEGEADALKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT   KL+K++++  G +V++A+ DT R AA++QL+I   +  
Sbjct: 98  DNPPATILMVGLQGSGKTTTTAKLAKRLAERQGKRVLMASLDTNRPAAMEQLQILGAQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G  A  +A  A  Q      DV+++DTAGRLH + +LM  + + +R     D
Sbjct: 158 VDTLPIVKGESAVQIAKRAKTQGAMGGYDVIMLDTAGRLHIDEVLMDEV-QAVR-----D 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ+A+     F    G +G+++T+MDG  RGG  + +      P+
Sbjct: 212 LAQPRETLLVVDGLTGQDAVNVAAEFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F  +  +  I G  D
Sbjct: 272 RFVGLGEKMDALETFEPERIAGRILGMGD 300


>gi|302654843|ref|XP_003019220.1| hypothetical protein TRV_06769 [Trichophyton verrucosum HKI 0517]
 gi|291182928|gb|EFE38575.1| hypothetical protein TRV_06769 [Trichophyton verrucosum HKI 0517]
          Length = 504

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 121/235 (51%), Gaps = 10/235 (4%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           +Q+ ++D  +L+  ++ P ++PF      + +VI++VG+ G GKTT   KL++     G 
Sbjct: 45  IQKAVFD--QLV-ALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKLARHYQTKGF 100

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K  L   DT R+ A DQLK  A +    +  S   +D   ++ E   + + ++ D++I+D
Sbjct: 101 KAALVCADTLRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKKERFDIIIVD 160

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           T+GR      L A + ++   +K      P   + VLD+T GQ A  Q   F + A    
Sbjct: 161 TSGRHRQEEDLFAEMTQIQSAIK------PDQTIMVLDSTIGQAAETQSAAFKSAADFGA 214

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK DG A GGG I  V   + P+ FLG GE + DLE F  + F   + G  D
Sbjct: 215 IIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPRPFVQKLLGMGD 269


>gi|37525223|ref|NP_928567.1| signal recognition particle protein [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784650|emb|CAE13550.1| Signal recognition particle protein (P48) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 453

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 150/307 (48%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D ++E L ++   L+ +D+ + V +  +     K  A
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFIS--CVKESA 59

Query: 77  KDVSVQRVLYDVSELIH-------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               V + L    E +        K +  ++   N   +  P V+L+ G+ G GKTT + 
Sbjct: 60  VGHEVNKSLTPGQEFVKIVQNELVKAMGEVNSELNLS-TQPPAVVLMAGLQGAGKTTSVA 118

Query: 130 KLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL   +      KV++ + D +R AAI QL+  A     DF  S+       +  +A + 
Sbjct: 119 KLGSFLKGKQKKKVLVVSADVYRPAAIKQLETLAQAVGIDFYPSDAQEKPVDIVTQAVQH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVL++DTAGRLH +  +M  I ++ + +       P   L V+DA TGQ+A   
Sbjct: 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHKAIN------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++
Sbjct: 233 AKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|310641514|ref|YP_003946272.1| signal recognition (srp) component [Paenibacillus polymyxa SC2]
 gi|309246464|gb|ADO56031.1| Signal recognition (SRP) component [Paenibacillus polymyxa SC2]
          Length = 458

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 137/267 (51%), Gaps = 10/267 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L+ +D+   V +  + ++  K   K+V    +   V+ D+       LM  S+      +
Sbjct: 39  LLEADVNFKVVKDFIAKVKEKSVGKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKAN 98

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P VI++VG+ G GKTT  GKL+K +     + +L AGD +R AAI QL+I  ++ +A 
Sbjct: 99  KPPTVIMMVGLQGAGKTTTSGKLAKLLQKQNHRPLLVAGDIYRPAAIKQLQILGEQINAP 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                  +    +A +  + A+    D +IIDTAGRLH +  LM  + ++   +K     
Sbjct: 159 VFTLGDQTSPVEIAKQGLQHAKDNGNDYVIIDTAGRLHVDEELMEELRQIHTNVK----- 213

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  VL V+D+ TGQ+A+   E F+     TG+++TK+DG  RGG  + +      P+ F
Sbjct: 214 -PDEVLLVVDSMTGQDAVNVAEHFNNSLELTGVVLTKLDGDTRGGAALSVKAVTGCPIKF 272

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
             +GE ++ +EPF  +  ++ I G  D
Sbjct: 273 ATLGEKLDAMEPFHPERMASRILGMGD 299


>gi|149916818|ref|ZP_01905320.1| signal recognition particle protein [Plesiocystis pacifica SIR-1]
 gi|149822535|gb|EDM81924.1| signal recognition particle protein [Plesiocystis pacifica SIR-1]
          Length = 591

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 10/228 (4%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHV---ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + H+ L+ L  P +   +        I++VG+ G GKTT  GKL++K+   G KVML A 
Sbjct: 86  ICHEALVELMGPVDTSLARANKGVTGIMMVGLQGSGKTTTTGKLARKLQKEGHKVMLVAA 145

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D +R AAI QL++  +R     V +  G++   +  +A +QA  + +D ++ DTAGRL  
Sbjct: 146 DVYRPAAIHQLQVLGERLGVP-VFARPGANPVDICRDATEQAAMEGMDFVLYDTAGRLTV 204

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  LM  + K+   +       P ++  V+DA  GQ+A++  + F      TG+++TK+D
Sbjct: 205 DDALMEELEKIESSVH------PANIFLVIDAMIGQDAVQTAKAFDERLELTGVVLTKLD 258

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G ARGG  + I      P+ FLG+GE ++ LE F  +  +  I G  D
Sbjct: 259 GDARGGAALSIKAATGKPIKFLGMGESLDKLEDFRPEGLAGRILGMGD 306


>gi|115386444|ref|XP_001209763.1| hypothetical protein ATEG_07077 [Aspergillus terreus NIH2624]
 gi|114190761|gb|EAU32461.1| hypothetical protein ATEG_07077 [Aspergillus terreus NIH2624]
          Length = 645

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 141/283 (49%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSE-LIHKMLMP----- 98
           +ED L++ ++    A ++ +    EL+ K+ A   SV   L    E  + K+L P     
Sbjct: 356 MEDHLLKKNVAREAAVRLCDGVKRELVGKKTANFQSVDAALQLAMESALRKILTPTSSLD 415

Query: 99  -------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                  +S P     S RP+VI +VGVNGVGK+T +GK+   +     +V++AA DTFR
Sbjct: 416 LLREIDAVSSPTTKQQSPRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRVLIAACDTFR 475

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A +   A K DV++ID
Sbjct: 476 SGAVEQLRVHA-RNLKELSARENVGEVELYEKGYGKDAANVAKDAVEYGAANKFDVVLID 534

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +  K      P  +  V +A  G +++ Q   F+   GT  
Sbjct: 535 TAGRRHNDQRLMSSLEKFAKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 588

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 589 NLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 631


>gi|328861050|gb|EGG10154.1| hypothetical protein MELLADRAFT_115576 [Melampsora larici-populina
           98AG31]
          Length = 617

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 106/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+VI+ VG+ G GKTT   KL+      G +  L   DTFR+ A DQLK  A R    F
Sbjct: 115 KPNVIMFVGLQGSGKTTSCTKLAVYYQRKGFRTALVCADTFRAGAFDQLKQNAARAKVPF 174

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S   +D   ++     + + ++ +V+I+DT+GR    + L   + ++   ++      
Sbjct: 175 FGSHTETDPIRISAAGVTKFKRERFEVIIVDTSGRHRQETELFEEMKQISSAVQ------ 228

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+  + VLD   GQ A  Q   F   AG   +I+TKMDG A+GGG I  V   + P+ F+
Sbjct: 229 PNLTIMVLDGAIGQAAEAQTRAFKEAAGFGAIIVTKMDGHAKGGGAISAVAATQTPIMFI 288

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+DLE F    F + + G  D
Sbjct: 289 GTGEHIHDLERFSPGPFISKVLGMAD 314


>gi|149927162|ref|ZP_01915419.1| signal recognition particle protein [Limnobacter sp. MED105]
 gi|149824101|gb|EDM83322.1| signal recognition particle protein [Limnobacter sp. MED105]
          Length = 465

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 154/310 (49%), Gaps = 27/310 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIV----EELLT 72
           F + S +L   + +I    R+ +   +E L ++   L+ +D+ + V ++ +    E+ L 
Sbjct: 2   FENLSDRLTRVVKNIKGEARITEANTQEMLREVRLALLEADVALPVVKEFINQVKEQALG 61

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHV-ILVVGVNGVGKTTVIG 129
           +     ++  + L  +   +HK L+ L   K    + + +P V IL+ G+ G GKTT  G
Sbjct: 62  EEVLNSLTPGQALVGI---VHKQLIKLIGEKTEEINLAAQPPVVILMAGLQGAGKTTTTG 118

Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + D    KV+  + D +R AAI+QLK  + +  A+F  S+I      +A  A   
Sbjct: 119 KLAKYLKDNLKKKVLTVSADVYRPAAIEQLKTVSGQAGAEFFPSDITQKPVDIALAALNH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245
           A+ +  DVLI+DTAGRL  +  +M  I  +         HA   P   L V+DA  GQ+A
Sbjct: 179 AKRQFFDVLILDTAGRLGIDEAMMNEIKAL---------HAAVNPTETLFVIDAMLGQDA 229

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
               + F+     TG+++TKMDG ARGG  + +      P+ F+GVGE +   E F    
Sbjct: 230 ANTAKAFNEALPLTGVVLTKMDGDARGGAALSVRQITGKPIKFMGVGEKLTGFEKFHPDR 289

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 290 VAGRILGMGD 299


>gi|39654777|pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
           Implications For Inter-Domain Communication
 gi|39654779|pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
           Implications For Inter-Domain Communication
 gi|39654781|pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
           Implications For Inter-Domain Communication
 gi|39654783|pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
           Implications For Inter-Domain Communication
 gi|39654785|pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
           Implications For Inter-Domain Communication
 gi|39654786|pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
           Implications For Inter-Domain Communication
          Length = 440

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 152/313 (48%), Gaps = 26/313 (8%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67
           L  IR   + F + S   ++ + + I          ++L+  LI SD+ V +   +   +
Sbjct: 10  LENIRDAVRKFLTGSTPYEKAVDEFI----------KDLQKSLISSDVNVKLVFSLTAKI 59

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGK 124
           +E L K     V ++R  + +S +++  L  L    K  N + +  P +I++VGV G GK
Sbjct: 60  KERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGK 117

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL+      G KV L A D +R AA DQL    ++            +   +A +
Sbjct: 118 TTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKK 177

Query: 185 AFKQAQAKKVDVLIIDTAGR--LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                   K+D++I+DTAGR      + L+  + +M  VLK      P  V+ V+DA+ G
Sbjct: 178 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK------PDDVILVIDASIG 231

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q A      FH  +    +I+TKMDGTA+GGG +  VV     + F+G GE I++LE F 
Sbjct: 232 QKAYDLASRFHQASPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFN 291

Query: 303 AKDFSAVITGCLD 315
           AK F + I G  D
Sbjct: 292 AKRFVSRILGMGD 304


>gi|125552939|gb|EAY98648.1| hypothetical protein OsI_20572 [Oryza sativa Indica Group]
          Length = 483

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 133/267 (49%), Gaps = 12/267 (4%)

Query: 51  DLLIR--SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           D+ IR  SD+   + + +  + L     K   +Q+ ++  +EL + ML P  KP      
Sbjct: 43  DVQIRMVSDMRANIRRAVNLDALPAGTNKRRIIQQAVF--AELCN-MLDP-GKPSFTPTK 98

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P V++ VG+ G GKTT   K +      G K  L   DTFR+ A DQLK  A +    
Sbjct: 99  GKPSVVMFVGLQGSGKTTTCTKYAHYHQLKGFKPSLVCADTFRAGAFDQLKQNATKAKIP 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  S + SD   +A E  ++ + +K D++I+DT+GR    + L   + ++    K     
Sbjct: 159 YYGSYMESDPVKIAVEGVERFRKEKSDLIIVDTSGRHKQEAALFEEMRQVAEATK----- 213

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  V+ V+D + GQ A  Q + F   A    +I+TK+DG A+GGG +  V   K PV F
Sbjct: 214 -PDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIVTKLDGHAKGGGALSAVAATKSPVVF 272

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE + D E F  K F + + G  D
Sbjct: 273 IGTGEHMQDFEVFDVKPFVSRLLGMGD 299


>gi|167040350|ref|YP_001663335.1| signal recognition particle protein [Thermoanaerobacter sp. X514]
 gi|256750717|ref|ZP_05491602.1| signal recognition particle protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914434|ref|ZP_07131750.1| signal recognition particle protein [Thermoanaerobacter sp. X561]
 gi|307724330|ref|YP_003904081.1| signal recognition particle protein [Thermoanaerobacter sp. X513]
 gi|166854590|gb|ABY92999.1| signal recognition particle protein [Thermoanaerobacter sp. X514]
 gi|256750300|gb|EEU63319.1| signal recognition particle protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889369|gb|EFK84515.1| signal recognition particle protein [Thermoanaerobacter sp. X561]
 gi|307581391|gb|ADN54790.1| signal recognition particle protein [Thermoanaerobacter sp. X513]
          Length = 446

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VI++VG+ G GKTT  GKL+  +   G   +L A D  R AAI QL++     +    
Sbjct: 101 PAVIMMVGLQGSGKTTACGKLANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVF 160

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 +   +A  +   A++   DV+IIDTAGRLH +  LM  +  + + ++      P
Sbjct: 161 TMGDKVNPVDIAKASIDYAKSHNSDVIIIDTAGRLHVDEELMEELVNIKKAVQ------P 214

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+DA TGQ+A+     F+A    TG+I+TK+DG  RGG  + I    + P+ ++G
Sbjct: 215 DEILLVVDAMTGQDAVNVASSFNARLDITGVILTKLDGDTRGGAALSIKAVTQKPIKYIG 274

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE + DLEPF     ++ I G  D
Sbjct: 275 TGEKLTDLEPFYPDRMASRILGMGD 299


>gi|325263003|ref|ZP_08129739.1| signal recognition particle protein [Clostridium sp. D5]
 gi|324032097|gb|EGB93376.1| signal recognition particle protein [Clostridium sp. D5]
          Length = 451

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 154/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++ S  RL +D V+  L+++   L+ +D+   V +  V+++  +   
Sbjct: 3   FDSLTEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKGFVKDVQERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + +++   +            VI++ G+ G GKTT   KL
Sbjct: 63  QDVMNGLNPGQMVIKIVNEEMVRLMGSETTEIQLQPGSAITVIMMAGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G K +L A D +R AAI QL+I  ++   +       +  A +A  A++ A  
Sbjct: 123 AGKYKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSMGDKNKPADIAKAAYEHAVK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+     
Sbjct: 183 NGNNIVILDTAGRLHIDEDMMAELQEIKEAV------TVHQTILVVDAMTGQDAVNVAGS 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FHEKIGIDGVIVTKLDGDTRGGAALSIKAVTGRPILYIGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|115464807|ref|NP_001056003.1| Os05g0509500 [Oryza sativa Japonica Group]
 gi|33235565|dbj|BAC80140.1| signal recognition particle 54kDa subunit [Oryza sativa Japonica
           Group]
 gi|48475202|gb|AAT44271.1| putative signal recognition particle 54 KD protein (SRP54) [Oryza
           sativa Japonica Group]
 gi|113579554|dbj|BAF17917.1| Os05g0509500 [Oryza sativa Japonica Group]
 gi|215697189|dbj|BAG91183.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222632180|gb|EEE64312.1| hypothetical protein OsJ_19149 [Oryza sativa Japonica Group]
          Length = 483

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 133/267 (49%), Gaps = 12/267 (4%)

Query: 51  DLLIR--SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           D+ IR  SD+   + + +  + L     K   +Q+ ++  +EL + ML P  KP      
Sbjct: 43  DVQIRMVSDMRANIRRAVNLDALPAGTNKRRIIQQAVF--AELCN-MLDP-GKPSFTPTK 98

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P V++ VG+ G GKTT   K +      G K  L   DTFR+ A DQLK  A +    
Sbjct: 99  GKPSVVMFVGLQGSGKTTTCTKYAHYHQLKGFKPSLVCADTFRAGAFDQLKQNATKAKIP 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  S + SD   +A E  ++ + +K D++I+DT+GR    + L   + ++    K     
Sbjct: 159 YYGSYMESDPVKIAVEGVERFRKEKSDLIIVDTSGRHKQEAALFEEMRQVAEATK----- 213

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  V+ V+D + GQ A  Q + F   A    +I+TK+DG A+GGG +  V   K PV F
Sbjct: 214 -PDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIVTKLDGHAKGGGALSAVAATKSPVVF 272

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE + D E F  K F + + G  D
Sbjct: 273 IGTGEHMQDFEVFDVKPFVSRLLGMGD 299


>gi|218884721|ref|YP_002429103.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Desulfurococcus kamchatkensis 1221n]
 gi|218766337|gb|ACL11736.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Desulfurococcus kamchatkensis 1221n]
          Length = 449

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 134/277 (48%), Gaps = 20/277 (7%)

Query: 48  ELEDLLIRSDI----GVAVAQKIVEELLTKRYAKDVSVQR-----VLYDVSELIHKMLMP 98
           EL+  L+R+D+     V +  +I E  L       +S +      V  +++ L+     P
Sbjct: 29  ELQKELVRADVNLKLAVEITNRIKERALKSEPPPGISRREWFITIVYEELTRLLGGDKKP 88

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             KP       +P VI++VG+ G GKTT   KL+      G KV L A DTFR AA  QL
Sbjct: 89  SIKPLK-----KPWVIMLVGLQGSGKTTTAAKLAYFYKLEGYKVGLVAADTFRPAAYTQL 143

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K   ++           ++A ++A +       ++ D++IIDTAGR H    L+  + K+
Sbjct: 144 KQLGEQIGVPVYGEPDNNNAVSIAVKGVSFFIERRTDIIIIDTAGRHHKEEDLLDEMRKI 203

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
              +K      P  V+ V+DA+ GQ A    + FH       +I+TK+DGTA+GGG +  
Sbjct: 204 SEQVK------PDEVILVIDASIGQQAHNIAKKFHETTPIGSIIVTKLDGTAKGGGALSA 257

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           V      V F+G GE I++LE F    F + I G  D
Sbjct: 258 VAATGAMVKFIGTGEKIDELEVFNPPRFVSRILGLGD 294


>gi|225568167|ref|ZP_03777192.1| hypothetical protein CLOHYLEM_04241 [Clostridium hylemonae DSM
           15053]
 gi|225162886|gb|EEG75505.1| hypothetical protein CLOHYLEM_04241 [Clostridium hylemonae DSM
           15053]
          Length = 448

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 152/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++ S  RL +D V+E L+++   L+ +D+   V +  ++ +  +   
Sbjct: 3   FDSLTEKLQNIFKNLRSKGRLTEDDVKEALKEIKRALLAADVNFKVVKGFIKNVQERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +            VI++ G+ G GKTT   KL
Sbjct: 63  QDVMNGLNPGQMVIKIVNEELVKLMGSETTEIKLQPGSAVTVIMMAGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G K +LAA D +R AAI QL++  ++   D          + +A  A   AQ 
Sbjct: 123 AGKYKLKGKKPLLAACDVYRPAAIKQLQVNGEKQGVDVFSMGDSHKPSDIAKAALLHAQK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+     
Sbjct: 183 NGNNIVILDTAGRLHIDEDMMAELQEIKEAVD------VHQTILVIDAMTGQDAVNVASD 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + +      P+ + G+GE ++DLE F     ++ I 
Sbjct: 237 FNEKIGIDGVIITKLDGDTRGGAALSVKAVTGKPILYAGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|216264790|ref|ZP_03436782.1| signal recognition particle protein [Borrelia burgdorferi 156a]
 gi|221217919|ref|ZP_03589386.1| signal recognition particle protein [Borrelia burgdorferi 72a]
 gi|223889344|ref|ZP_03623930.1| signal recognition particle protein [Borrelia burgdorferi 64b]
 gi|224533336|ref|ZP_03673930.1| signal recognition particle protein [Borrelia burgdorferi CA-11.2a]
 gi|226320468|ref|ZP_03796034.1| signal recognition particle protein [Borrelia burgdorferi 29805]
 gi|215981263|gb|EEC22070.1| signal recognition particle protein [Borrelia burgdorferi 156a]
 gi|221192225|gb|EEE18445.1| signal recognition particle protein [Borrelia burgdorferi 72a]
 gi|223885030|gb|EEF56134.1| signal recognition particle protein [Borrelia burgdorferi 64b]
 gi|224513501|gb|EEF83858.1| signal recognition particle protein [Borrelia burgdorferi CA-11.2a]
 gi|226234110|gb|EEH32825.1| signal recognition particle protein [Borrelia burgdorferi 29805]
 gi|312148436|gb|ADQ31095.1| signal recognition particle protein [Borrelia burgdorferi JD1]
 gi|312149665|gb|ADQ29736.1| signal recognition particle protein [Borrelia burgdorferi N40]
          Length = 444

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 15/276 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103
           E +++ L+ +D+ + V ++ +  ++ +  +K V V R +   S+ I  +   L K     
Sbjct: 32  EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89

Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           N++ S  P      IL++G+ G GKTT   KLS K+     KV+L A DTFR+AA++QLK
Sbjct: 90  NYELSLHPANKQSYILMLGLQGSGKTTTCAKLSLKLKKENRKVLLVAADTFRAAAVEQLK 149

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I   +        E   D   +   + K A++   D +I+DT GRL   S+L+  I K+ 
Sbjct: 150 ILGGQVGVPVFSIEGEKDPIKIVKASMKFAESNFFDSVIVDTRGRLEIESLLVEEIKKIK 209

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            +L+      P   + V+D+  GQ A+   + F+   G TG I +K D   RGG ++   
Sbjct: 210 GILR------PAETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +P+ F+GVGE I DL+ F  +  ++ I G  D
Sbjct: 264 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 299


>gi|218249508|ref|YP_002375194.1| signal recognition particle protein [Borrelia burgdorferi ZS7]
 gi|226321392|ref|ZP_03796919.1| signal recognition particle protein [Borrelia burgdorferi Bol26]
 gi|218164696|gb|ACK74757.1| signal recognition particle protein [Borrelia burgdorferi ZS7]
 gi|226233188|gb|EEH31940.1| signal recognition particle protein [Borrelia burgdorferi Bol26]
          Length = 444

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 15/276 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103
           E +++ L+ +D+ + V ++ +  ++ +  +K V V R +   S+ I  +   L K     
Sbjct: 32  EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89

Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           N++ S  P      IL++G+ G GKTT   KLS K+     KV+L A DTFR+AA++QLK
Sbjct: 90  NYELSLHPANKQSYILMLGLQGSGKTTTCAKLSLKLKKENRKVLLVAADTFRAAAVEQLK 149

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I   +        E   D   +   + K A++   D +I+DT GRL   S+L+  I K+ 
Sbjct: 150 ILGGQVGVPVFSIEGEKDPIKIVKASMKFAESNFFDSVIVDTRGRLEIESLLVEEIKKIK 209

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            +L+      P   + V+D+  GQ A+   + F+   G TG I +K D   RGG ++   
Sbjct: 210 GILR------PAETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +P+ F+GVGE I DL+ F  +  ++ I G  D
Sbjct: 264 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 299


>gi|300214422|gb|ADJ78838.1| Signal recognition particle protein [Lactobacillus salivarius CECT
           5713]
          Length = 479

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 139/277 (50%), Gaps = 13/277 (4%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL 99
           V  E+   L+ +D+   V +  V+ + ++    +V       Q+++  V+E + K++   
Sbjct: 31  VMREIRLALLEADVNFKVVKDFVKTVRSRAIGAEVLESLTPAQQIVKIVNEELVKVMGEE 90

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158
           + P N   +  P +I++VG+ G GKTT   KL+ K+  +   +  + A D +R AAIDQL
Sbjct: 91  AAPLNKS-AKIPTIIMMVGLQGAGKTTTASKLANKLKKEKNARPFMIAADVYRPAAIDQL 149

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           KI             +  D   +  +  ++A+ KK D +IIDTAGRL  +  LM  +  +
Sbjct: 150 KILGKDIDVPVFSLGVDVDPVEIVRQGLEEAKDKKNDYVIIDTAGRLQIDEKLMQELSSI 209

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
             + +      P  +L  +DA TGQNA+   + F+     TG+++TK+DG  RGG  + I
Sbjct: 210 KELAQ------PDEILLTVDAMTGQNAVEVAKGFNDQLDVTGVVLTKLDGDTRGGAALSI 263

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                 P+ F+G GE + DL+ F     ++ I G  D
Sbjct: 264 RAVTGKPIKFIGQGEKMTDLDVFYPDRMASRILGMGD 300


>gi|298292734|ref|YP_003694673.1| signal recognition particle protein [Starkeya novella DSM 506]
 gi|296929245|gb|ADH90054.1| signal recognition particle protein [Starkeya novella DSM 506]
          Length = 517

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 146/274 (53%), Gaps = 13/274 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102
           E+   LI +D+ + V +   + + T+    +V  SV   Q V+  V++ +  ML   +KP
Sbjct: 33  EVRRALIEADVALDVVRSFTDRVRTRAVGAEVIKSVTPGQMVVKIVNDELVAMLGSDAKP 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIW 161
            + D +  P  +L+VG+ G GKTT   K++K+++D +  KV++A+ DT R AA++QL   
Sbjct: 93  IDLDAAP-PVPVLMVGLQGSGKTTSTAKIAKRLTDRSNRKVLMASLDTRRPAAMEQLATL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +   + +    G  A  +A  A + A+    DV+++DTAGR+  +  LMA + + ++ 
Sbjct: 152 GSQVGVETLPIVAGQSAVQIARRAMEAARLGGYDVVMLDTAGRVTLDEALMAEVAE-VKA 210

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
             R     PH VL V D+ TGQ+A+   + F    G TG+++T+ DG  RGG  + +   
Sbjct: 211 ATR-----PHEVLLVADSLTGQDAVNTAKAFDERVGLTGIVLTRADGDGRGGAALSMRAV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+  LG GE ++ LE F  +  +  I G  D
Sbjct: 266 TGKPIKLLGTGEKMDALEDFDPRRVAGRILGMGD 299


>gi|227890693|ref|ZP_04008498.1| signal recognition particle protein [Lactobacillus salivarius ATCC
           11741]
 gi|227867631|gb|EEJ75052.1| signal recognition particle protein [Lactobacillus salivarius ATCC
           11741]
          Length = 482

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 139/277 (50%), Gaps = 13/277 (4%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL 99
           V  E+   L+ +D+   V +  V+ + ++    +V       Q+++  V+E + K++   
Sbjct: 34  VMREIRLALLEADVNFKVVKDFVKTVRSRAIGAEVLESLTPAQQIVKIVNEELVKVMGEE 93

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158
           + P N   +  P +I++VG+ G GKTT   KL+ K+  +   +  + A D +R AAIDQL
Sbjct: 94  AAPLNKS-AKIPTIIMMVGLQGAGKTTTASKLANKLKKEKNARPFMIAADVYRPAAIDQL 152

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           KI             +  D   +  +  ++A+ KK D +IIDTAGRL  +  LM  +   
Sbjct: 153 KILGKDIDVPVFSLGVDVDPVEIVRQGLEEAKDKKNDYVIIDTAGRLQIDEKLMQELSS- 211

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
              +K L    P  +L  +DA TGQNA+   + F+     TG+++TK+DG  RGG  + I
Sbjct: 212 ---IKEL--AQPDEILLTVDAMTGQNAVEVAKGFNDQLDVTGVVLTKLDGDTRGGAALSI 266

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                 P+ F+G GE + DL+ F     ++ I G  D
Sbjct: 267 RAVTGKPIKFIGQGEKMTDLDVFYPDRMASRILGMGD 303


>gi|261839880|gb|ACX99645.1| signal recognition particle protein [Helicobacter pylori 52]
          Length = 448

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGVALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|149194109|ref|ZP_01871207.1| Signal recognition particle protein [Caminibacter mediatlanticus
           TB-2]
 gi|149136062|gb|EDM24540.1| Signal recognition particle protein [Caminibacter mediatlanticus
           TB-2]
          Length = 449

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 158/303 (52%), Gaps = 27/303 (8%)

Query: 27  KLKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRY--AKD 78
           ++ +G    I+  R+ D  +      +EL+  L+++D+      K V+ELL K     K 
Sbjct: 4   RISDGFRSAINKIRMKDDEKSLKKALDELKKNLLKADVHF----KTVKELLRKVEIETKK 59

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             + R  + +  L   +   L+ P N+ F   S  P V+++ G+ G GKTT   KL+  +
Sbjct: 60  AGIGRANF-LKALEEALKEILTAPGNYGFVYASKPPTVVMMTGLQGSGKTTTTAKLAYYL 118

Query: 136 SD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
            +    KV++ A D  R AA++QL+  A++   D    E   +A  +A +  ++A+ K  
Sbjct: 119 KNFKKKKVLMVAADLQRLAAVEQLRQLAEQNELDIFYDENAKNAVEVAKKGVEEAKNKFY 178

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV++IDTAGRL  +  LM    ++I + K +DP+    +  V D+ TG++A+   + F  
Sbjct: 179 DVVLIDTAGRLAIDEALM---NELIEMKKEVDPN---EIFYVADSLTGKDAINTAKAFDE 232

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKI--PVYFLGVGEGINDLEPFVAKDFSAVITG 312
               TG+I+TK DG ++GG  + + + H++  P+ F+G GE I DLE FV     + I G
Sbjct: 233 KLDITGVILTKYDGDSKGG--VALSIAHQVGKPLRFIGTGEKIADLEVFVPDRIVSRIMG 290

Query: 313 CLD 315
             D
Sbjct: 291 AGD 293


>gi|157374297|ref|YP_001472897.1| signal recognition particle protein [Shewanella sediminis HAW-EB3]
 gi|157316671|gb|ABV35769.1| signal recognition particle protein [Shewanella sediminis HAW-EB3]
          Length = 457

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 152/309 (49%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEDNVKDTLREVRMALLEADVALPVVRAFVNGV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPH-VILVVGVNGVGKTTVIGK 130
             + V + L      I  +   L           D S +P  VI++ G+ G GKTT + K
Sbjct: 60  VGLEVSKSLSPGQAFIKIVQSELENAMGEANEGLDLSAQPPAVIMMAGLQGAGKTTSVAK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK + +   K V++ + D +R AAI QL+  A     +F  S++      +   A   A
Sbjct: 120 LSKFLRERDKKSVLVVSADVYRPAAIKQLETLAAEVEVEFFPSDVSQKPIDIVNAAMTHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K +DV+I+DTAGRLH +  +M  I  +         HA   P   L V+DA TGQ+A 
Sbjct: 180 KLKFIDVVIVDTAGRLHVDEGMMDEIKAL---------HAAVNPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     
Sbjct: 231 NTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRI 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|307718738|ref|YP_003874270.1| hypothetical protein STHERM_c10520 [Spirochaeta thermophila DSM
           6192]
 gi|306532463|gb|ADN01997.1| hypothetical protein STHERM_c10520 [Spirochaeta thermophila DSM
           6192]
          Length = 443

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 102/203 (50%), Gaps = 6/203 (2%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +IL+ G+ G GKTT   KL+  +   G + +L A D  R AAIDQL+             
Sbjct: 103 IILLAGLQGSGKTTTAAKLALHLKKKGRRPLLVAADLARPAAIDQLETLGATIDVPVYTD 162

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               D   L   A   A+ + VD LI+DTAGR   +  LM  + +++R L      +P  
Sbjct: 163 RSLKDPRTLVKRALSHAKRQAVDTLIVDTAGRHQVDRELMDELSRLVRDL------SPDE 216

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L V DA TGQ A+   + F+   G TG+++TK D   RGG  + I      P+ F+GVG
Sbjct: 217 TLLVADAMTGQTAVDVAKAFNEAVGITGVVLTKFDSDTRGGAALSIRTITGAPIKFIGVG 276

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E ++DLEPF     ++ I G  D
Sbjct: 277 EKVDDLEPFYPDRIASRILGMGD 299


>gi|291223336|ref|XP_002731666.1| PREDICTED: signal recognition particle 54kDa-like [Saccoglossus
           kowalevskii]
          Length = 492

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KPNVIMFVGLQGSGKTTTCTKLAYHYQKKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E   + + +  +++I+DT+GR      L         +L+  +  +
Sbjct: 160 YGSYTEMDPVVIAAEGVDKFKKENFEIIIVDTSGRHKQEDSLFE------EMLQVSNVTS 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P +V+ V+DAT GQ    Q   F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 214 PDNVIYVMDATIGQACESQARAFKEKVDVASVIITKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D E F  K F + + G  D
Sbjct: 274 GTGEHIDDFEQFKTKPFVSKLLGMGD 299


>gi|224370185|ref|YP_002604349.1| Ffh [Desulfobacterium autotrophicum HRM2]
 gi|223692902|gb|ACN16185.1| Ffh [Desulfobacterium autotrophicum HRM2]
          Length = 441

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 142/285 (49%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           +S + +D+G+++ +   L+ +D+   VA+K++ ++  +   ++V       Q+V+  V +
Sbjct: 22  LSEKAIDEGLKQ-VRMALLEADVNYRVAKKVISDIHRRALGQEVMESLTPGQQVIKIVYD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
               M+    +  N   +  P  +++VG+ G GKTT  GKL+  +   G +  L   D  
Sbjct: 81  EFSTMMGSAHEGLNLG-NRVPETVMLVGLQGAGKTTTAGKLALYLKKQGKRPFLVPVDLH 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAIDQLK    +       S        +   A K A  +  D L++DTAGRLH +  
Sbjct: 140 RPAAIDQLKKLGKQLGIPVFDSTQEMKLGDICRAAEKMAGQEGFDTLLVDTAGRLHVDDG 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LMA + ++ ++L       P   L V DA TGQ+A+     F      TG+I+TKMDG A
Sbjct: 200 LMAELVELKKMLN------PVETLLVADAMTGQDAVNIAGAFDKAVDLTGVILTKMDGDA 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+GVGE    LEPF  +  ++ I G  D
Sbjct: 254 RGGAALSIKAVTGKPLKFIGVGEKSTGLEPFHPERMASRILGMGD 298


>gi|124008224|ref|ZP_01692921.1| signal recognition particle protein [Microscilla marina ATCC 23134]
 gi|123986323|gb|EAY26145.1| signal recognition particle protein [Microscilla marina ATCC 23134]
          Length = 434

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 158/309 (51%), Gaps = 23/309 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVE----ELLT 72
           F S S +++E +  +    R+ +  V   ++D+   LI +D+   +A+++ +    E L 
Sbjct: 2   FESLSQRIEEAVHKLKGKGRITEVNVASTIKDIRRALIDADVNYKIAKQVTDDIKVEALG 61

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           ++  K ++  +VL    +++H+ L  L   KP   +    P ++L+ G+ G GKTT  GK
Sbjct: 62  RKVLKSLAPGQVLI---KIVHEKLTELMGGKPQEANLKGSPAIVLMAGLQGSGKTTFSGK 118

Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      KV+L A D +R AAI+QLK+  ++   +        +  A+A  A + A
Sbjct: 119 LANLIQQKQHKKVLLVACDVYRPAAIEQLKVVGEQIGVEVYAEPDNKNPVAIAQNAVEHA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +     V+++DTAGRL  + ++M  I ++   ++      P   L V+DA TGQ+A+   
Sbjct: 179 KTHHYKVVVVDTAGRLAIDEVMMLEIAQIKAAIQ------PSETLFVVDAMTGQDAVNTA 232

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+      G+++TKMDG  RGG  + I      P+ F+G GE +  L+ F  +  +  
Sbjct: 233 KAFNERIDFDGVVLTKMDGDTRGGAALSIRAVVDKPIKFIGTGEQMRALDTFRPEGMAGR 292

Query: 310 ITGCLDYGE 318
           I   LD G+
Sbjct: 293 I---LDMGD 298


>gi|146281574|ref|YP_001171727.1| signal recognition particle protein Ffh [Pseudomonas stutzeri
           A1501]
 gi|145569779|gb|ABP78885.1| signal recognition particle protein Ffh [Pseudomonas stutzeri
           A1501]
          Length = 482

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 160/319 (50%), Gaps = 20/319 (6%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVA 61
           +++ S+ W+      F + + +L + +  +    +L +D +++ L ++   L+ +D+ + 
Sbjct: 16  LSTSSVEWLM-----FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALP 70

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR---PHVILVV 117
           V +  V  +  +    +VS          +++   L  L    N D +     P V+L+ 
Sbjct: 71  VVKDFVNRVKERAVGTEVSKSLTPGQAFVKIVRAELEELMGAANEDLALNVTPPAVVLMA 130

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           G+ G GKTT +GKL++ + +   K V++ + D +R AAI QL+  A      F  S+   
Sbjct: 131 GLQGAGKTTTVGKLARFLKERKKKTVLVVSADVYRPAAIKQLETLAGEVGVTFFPSDTSQ 190

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
               +A  A ++A+ K +DV+++DTAGRL  ++ +MA I  +   +K      P   L V
Sbjct: 191 KPVDIAQAAIREAKLKFIDVVLVDTAGRLAIDAEMMAEIQAVHAAIK------PAETLFV 244

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DA TGQ+A      F      TG+++TK+DG ARGG  + +      P+ FLG+GE  +
Sbjct: 245 VDAMTGQDAANTARAFGDALPLTGVVLTKVDGDARGGAALSVRHVTGKPIKFLGMGEKSD 304

Query: 297 DLEPFVAKDFSAVITGCLD 315
            LEPF     ++ I G  D
Sbjct: 305 ALEPFHPDRIASRILGMGD 323


>gi|255553241|ref|XP_002517663.1| signal recognition particle 54 kD protein, putative [Ricinus
           communis]
 gi|223543295|gb|EEF44827.1| signal recognition particle 54 kD protein, putative [Ricinus
           communis]
          Length = 497

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 144/290 (49%), Gaps = 19/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86
           II  + L+D + E +   L++SD+   +        +KIV  + L   + K   +Q+ ++
Sbjct: 22  IIDEKALNDCLNE-ITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRKIIQQAIF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           +  EL  KML P  KP       +  V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  N--ELC-KMLDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + +  D++I+DT+GR  
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHK 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
             + L   + ++    K      P  V+ V+D++ GQ A  Q + F        +I+TKM
Sbjct: 197 QEAALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKM 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           DG A+GGG +  V   K PV F+G GE +++ E F  K F + + G  D+
Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300


>gi|315655725|ref|ZP_07908623.1| signal recognition particle protein [Mobiluncus curtisii ATCC
           51333]
 gi|315489789|gb|EFU79416.1| signal recognition particle protein [Mobiluncus curtisii ATCC
           51333]
          Length = 557

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 151/312 (48%), Gaps = 25/312 (8%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT+ F +   K K   +D+       D    ++   LI +D+ + V +     +  K Y
Sbjct: 8   RLTESFKNLRKKGKLKDSDV-------DATVSDIRRALIEADVALEVVKDFTATVKEKAY 60

Query: 76  AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129
               S      Q+++  V++ +  +L    +  ++    + P V ++ G+ G GKTT+ G
Sbjct: 61  GAARSEALNPAQQIVKIVNDELINILGGEDRELHFSKPGKGPTVFMLAGLQGAGKTTLAG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAF 186
           KL K ++    KV+L A D  R  A++QL+I  ++        E G+   D   +A  A 
Sbjct: 121 KLGKWLAKENRKVLLVAADLQRPNAVNQLQIVGEQAGVTVFAPEPGNGVGDPVDVARRAL 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A     DV+I+DTAGRL  +  LMA   + IR     D   P  VL VLDA  GQ+A+
Sbjct: 181 ALASGSGYDVMIVDTAGRLGVDEELMA-QARSIR-----DEVQPDEVLFVLDAMIGQDAV 234

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           R    F      TG+++TK+DG ARGG  + +     +PV F   GEG++D E F A   
Sbjct: 235 RTARAFQEGVDFTGVVLTKLDGDARGGAALSVRGVTGVPVLFASTGEGLDDFERFHADRM 294

Query: 307 SAVITGCLDYGE 318
           ++ I   LD G+
Sbjct: 295 ASRI---LDMGD 303


>gi|126732663|ref|ZP_01748459.1| signal recognition particle protein [Sagittula stellata E-37]
 gi|126706793|gb|EBA05863.1| signal recognition particle protein [Sagittula stellata E-37]
          Length = 503

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 140/272 (51%), Gaps = 18/272 (6%)

Query: 53  LIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           L+ +D+ + VA++ V+ +        +TK       V ++++D  ELI  +L    +P  
Sbjct: 38  LLEADVSLPVARQFVKAVEKKATGAAVTKSVTPGQQVVKIVHD--ELIA-VLSGEGEPGK 94

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD 163
               + P  IL+VG+ G GKTT   KL+K++ +  G KV++A+ D  R AA++QL I   
Sbjct: 95  LKIDNPPAPILMVGLQGGGKTTTTAKLAKRLKERDGKKVLMASLDVNRPAAMEQLAILGT 154

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +   D +    G D  A+A  A  QA     DV ++DTAGRL  +  LM    + +  ++
Sbjct: 155 QIGVDTLPIVKGEDPVAIAKRAKTQAGLGGYDVYLLDTAGRLSIDEELM----RQVEAVR 210

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             D   P   L V+D  TGQ+A+   E F    G TG+++T+MDG  RGG  + +     
Sbjct: 211 --DVANPRETLLVVDGLTGQDAVHTAENFDTRVGITGVVLTRMDGDGRGGAALSMRAITG 268

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+G+GE ++ LE F     +  I G  D
Sbjct: 269 KPIKFVGLGEKMDALETFEPDRIAGRILGMGD 300


>gi|15595039|ref|NP_212828.1| signal recognition particle protein (ffh) [Borrelia burgdorferi
           B31]
 gi|2688634|gb|AAC67049.1| signal recognition particle protein (ffh) [Borrelia burgdorferi
           B31]
          Length = 447

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 15/276 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103
           E +++ L+ +D+ + V ++ +  ++ +  +K V V R +   S+ I  +   L K     
Sbjct: 35  EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 92

Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           N++ S  P      IL++G+ G GKTT   KLS K+     KV+L A DTFR+AA++QLK
Sbjct: 93  NYELSLHPANKQSYILMLGLQGSGKTTTCAKLSLKLKKENRKVLLVAADTFRAAAVEQLK 152

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I   +        E   D   +   + K A++   D +I+DT GRL   S+L+  I K+ 
Sbjct: 153 ILGGQVGVPVFSIEGEKDPIKIVKASMKFAESNFFDSVIVDTRGRLEIESLLVEEIKKIK 212

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            +L+      P   + V+D+  GQ A+   + F+   G TG I +K D   RGG ++   
Sbjct: 213 GILR------PAETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 266

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +P+ F+GVGE I DL+ F  +  ++ I G  D
Sbjct: 267 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 302


>gi|258514481|ref|YP_003190703.1| signal recognition particle protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778186|gb|ACV62080.1| signal recognition particle protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 449

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 148/292 (50%), Gaps = 20/292 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L+E    + +   L +  V E L ++   L+ +D+   V +  V ++  K   
Sbjct: 3   FSSLAERLQETFKKLRNKGSLKEADVSEALREVRVALLEADVNFKVVKDFVNKVKEKAIG 62

Query: 77  KDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIG 129
           +D+ S       V +++H+ LM L      ++S        P VI++VG++G GKTT   
Sbjct: 63  QDILSSLTPAQQVIKIVHQELMDL---MGGEYSKINLAPKPPTVIMMVGLHGAGKTTTSA 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+  +   G + +L AGD  R AAI QL++  ++              A +A  A + A
Sbjct: 120 KLANFLRKQGRRPLLVAGDIHRPAAIKQLQVLGEQLDIPVFTMGDKQAPAVIARAAIENA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D++IIDTAGRLH +  LM  +  +   +K      P+ +L V+DA TGQ+A+   
Sbjct: 180 SNSGRDLVIIDTAGRLHIDEELMDELEAVKSEVK------PNEILLVVDAMTGQDAVNVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           E+F+      G+IMTK+DG  RGG  + +      P+ F G+GE ++ LE F
Sbjct: 234 EVFNRRMQLNGVIMTKLDGDTRGGAALSVKAVTGCPIKFAGIGEKLDALETF 285


>gi|330834334|ref|YP_004409062.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Metallosphaera cuprina Ar-4]
 gi|329566473|gb|AEB94578.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Metallosphaera cuprina Ar-4]
          Length = 446

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 141/282 (50%), Gaps = 26/282 (9%)

Query: 47  EELEDLLIRSDIGV----AVAQKIVEELLTKRYAKDVSVQ----RVLYD-VSELIHKMLM 97
           +EL+  LI SD+ V    ++  KI E L  +    ++  +    +V+YD +S L      
Sbjct: 28  KELQKSLISSDVQVKLVLSLTNKIKERLKKETPPSNLERREWFIKVVYDELSALFGGDKE 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P   P        P VI++VGV G GKTT  GKL+      G KV L   D +R AA++Q
Sbjct: 88  PEVNP-----KSNPWVIMLVGVQGTGKTTTAGKLAYFYKRRGYKVALVGADVYRPAALEQ 142

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+    + +         SDA  ++     +  +++ +++IIDTAGR         G G+
Sbjct: 143 LRQIGKQINVPVYGEPDSSDAVGISERGVAKFLSERYELIIIDTAGR--------HGYGE 194

Query: 218 MIRVLKRL----DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
             ++L  +    +   P+ V+ V+DA+ GQ A    + FH  +    +I+TKMDGTA+GG
Sbjct: 195 ESKLLDEMKEIYEKVKPNEVVLVIDASLGQKAFDLAKKFHEASNVGSIIITKMDGTAKGG 254

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +  V      + F+G+GE I++LE F  + F A I G  D
Sbjct: 255 GALSAVAATGARIKFIGLGEKIDELEVFNPRRFVARILGMGD 296


>gi|157879167|pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
          Length = 295

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 143/307 (46%), Gaps = 28/307 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + VA+  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           K V       + +L  V E + + L     +P+ K  N  F        +VG+ G GKTT
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+      G + +L A DT R AA +QL++  ++     +    G    ++     
Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  
Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287

Query: 307 SAVITGC 313
           +  I G 
Sbjct: 288 AGRILGM 294


>gi|5822519|pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
           Protein Ffh From Thermus Aquaticus
 gi|5822520|pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
           Protein Ffh From Thermus Aquaticus
 gi|42543232|pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
 gi|118137447|pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
 gi|118137448|pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
 gi|118137449|pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
 gi|122920833|pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
           And Ftsy
 gi|122920834|pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
           And Ftsy
 gi|157832108|pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
           Protein Ffh From Thermus Aquaticus
 gi|315113199|pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
          Length = 294

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 143/307 (46%), Gaps = 28/307 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + VA+  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           K V       + +L  V E + + L     +P+ K  N  F        +VG+ G GKTT
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+      G + +L A DT R AA +QL++  ++     +    G    ++     
Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  
Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287

Query: 307 SAVITGC 313
           +  I G 
Sbjct: 288 AGRILGM 294


>gi|166368109|ref|YP_001660382.1| signal recognition particle protein [Microcystis aeruginosa
           NIES-843]
 gi|166090482|dbj|BAG05190.1| signal recognition particle protein [Microcystis aeruginosa
           NIES-843]
          Length = 478

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 145/290 (50%), Gaps = 29/290 (10%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D ISS  + D ++E +   L+ +D+ + V +  + E+  +    +V           +++
Sbjct: 20  DKISSANIQDTLKE-VRRALLEADVNLQVVKGFIAEVEKQALGAEVISGVNPGQQFIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL++         P VIL+ G+ G GKTT   KL+  +       
Sbjct: 79  YD--ELVKIMGESNVPLAQA-----DKPPTVILMAGLQGTGKTTATAKLALYLRKQSKSC 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIID 200
           ++ A D +R AAIDQL     + +      E+GS A    +A +  ++A+   VD +IID
Sbjct: 132 LMVATDVYRPAAIDQLITLGKQINVPVF--EMGSQANPVDIARQGVEKAKELGVDTVIID 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  ++ +M  + ++ +++K      P   L V+DA TGQ A      FH   G TG
Sbjct: 190 TAGRLQIDTQMMGELAQIKKIVK------PDDTLLVVDAMTGQEAASLTNTFHQQIGITG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            I+TK+DG  RGG  + +      P+ F+GVGE +  LEPF     ++ I
Sbjct: 244 AILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALEPFYPDRLASRI 293


>gi|58386979|ref|XP_315212.2| AGAP004610-PA [Anopheles gambiae str. PEST]
 gi|55239546|gb|EAA10561.2| AGAP004610-PA [Anopheles gambiae str. PEST]
          Length = 504

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 150/307 (48%), Gaps = 21/307 (6%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-- 72
           RK+T    S S         II+   LD  ++E +   L+ +D+ + + +K+ E + +  
Sbjct: 8   RKITNALHSLSK------ATIINEEVLDSMLKE-ICTALLEADVNIRLVKKLRENVRSVI 60

Query: 73  --KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                A  ++ +R++      EL+ K++ P  KP+      RP+VI+ VG+ G GKTT  
Sbjct: 61  DFDEMAGGLNKRRMIQSAVFKELV-KLVDPGVKPYQ-PIKGRPNVIMFVGLQGSGKTTTC 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +  + 
Sbjct: 119 TKLAYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVTIAQDGVEM 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +  + +I+DT+GR      L     +M+ V   ++P    +++ V+DAT GQ    Q
Sbjct: 179 FKKEGFEFIIVDTSGRHKQEESLFE---EMLAVANAVNPD---NIIFVMDATIGQACEAQ 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F +
Sbjct: 233 AKAFKEKVDIGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKTKPFIS 292

Query: 309 VITGCLD 315
            + G  D
Sbjct: 293 KLLGMGD 299


>gi|308235881|ref|ZP_07666618.1| signal recognition particle protein [Gardnerella vaginalis ATCC
           14018]
 gi|311115023|ref|YP_003986244.1| signal recognition particle protein [Gardnerella vaginalis ATCC
           14019]
 gi|310946517|gb|ADP39221.1| signal recognition particle protein [Gardnerella vaginalis ATCC
           14019]
          Length = 566

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 140/281 (49%), Gaps = 29/281 (10%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVS-ELIHKML 96
           DG   E+   L+ +D+ + V +    ++  +   ++VS      Q+V+  V+ EL + + 
Sbjct: 30  DGTIREIRRALLDADVALDVVRSFTAKIRERALGEEVSSALNPAQQVVRIVNDELTNVLG 89

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             + +P N+   + P VI++ G+ G GKTT+ GKL   + D+G   +L A D  R  A+ 
Sbjct: 90  SGVDRPLNF-AKYPPTVIMLAGLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVT 148

Query: 157 QLKIWADRTSADFVCSEIG----------------SDAAALAYEAFKQAQAKKVDVLIID 200
           QL++ A+R        E G                 D   +A ++   A+AK  D +IID
Sbjct: 149 QLEVVAERAGVAIFAPERGVQSDGGSEVVSAGLATGDPVKVARDSIDYARAKMYDTVIID 208

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  LM    +  R ++  D   P  +L V+DA  GQ+A+R  + F+     TG
Sbjct: 209 TAGRLGVDDALM----QQAREIR--DAVNPQEILFVIDAMIGQDAVRTAQAFNEGVDFTG 262

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           ++++K+DG ARGG  + +      P+ F   GEG+ D E F
Sbjct: 263 VVLSKLDGDARGGAALSVASVTGKPILFASTGEGLKDFEIF 303


>gi|221487598|gb|EEE25830.1| signal recognition particle 54 kda protein, putative [Toxoplasma
           gondii GT1]
          Length = 714

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 127/250 (50%), Gaps = 10/250 (4%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           G   ++   +E+ T+  A  V+ ++++    +SE++  ML P  +P+        +VI+ 
Sbjct: 121 GTGASKDSFQEINTRAAAVGVNSRKIIQKCVISEIV-AMLTPARQPY-VPRKGATNVIMF 178

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VG+ G GKTT   K +      G +V L   DTFR+ A DQLK  A +    F  S   +
Sbjct: 179 VGLQGSGKTTTCTKYAHYYQRKGWRVALVCADTFRAGAFDQLKQNATKVRIPFYGSYTEA 238

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D   +A E  +Q + +K D++I+DT+GR    + L     +M +V + +D   P  V+ V
Sbjct: 239 DPVKIAEEGVEQFRREKYDMIIVDTSGRHKQEAAL---FDEMKQVAEAVD---PDDVVFV 292

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +D+  GQ    Q + F        +I+TK+DG A+GGG +  V     P+ FLG GE  +
Sbjct: 293 MDSHIGQACFDQAQAFSESVDVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFD 352

Query: 297 DLEPFVAKDF 306
           D E F A  F
Sbjct: 353 DFEAFEANSF 362


>gi|26354843|dbj|BAC41048.1| unnamed protein product [Mus musculus]
          Length = 502

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KPNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATQARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ Q +  +++I+DT+GR      L     +M++V   +    
Sbjct: 160 YGSYTEMDPVIIASEGVEKFQNENFEIIIVDTSGRHQQEDSLFE---EMLQVSNAIQ--- 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 214 PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I++ EPF  + F + + G  D
Sbjct: 274 GTGEHIDNFEPFKTQPFISKLLGMGD 299


>gi|197335050|ref|YP_002155306.1| signal recognition particle protein [Vibrio fischeri MJ11]
 gi|197316540|gb|ACH65987.1| signal recognition particle protein [Vibrio fischeri MJ11]
          Length = 457

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 152/308 (49%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D ++E L ++   L+ +D+ + V +  V+ +  K  A
Sbjct: 2   FDNLTDRLSRTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFVKRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N      P VIL+ G+ G GKTT  G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQAELEAVMGDSNEALNL-ACQPPAVILMAGLQGAGKTTSTG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + +   K V++ + D +R AAI QL+  A     DF  S        +   A   
Sbjct: 119 KLAKLLKERDKKKVLVVSADVYRPAAIKQLETLATDVDVDFFPSSADQKPIDIVDAAISH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALR 247
           A+ K  DV+I+DTAGRL  ++ +M  I       K+L  H  P   L V+DA TGQ+A  
Sbjct: 179 AKLKFFDVVIVDTAGRLAVDTEMMDEI-------KQLHAHVNPIETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+I+TK+DG ARGG  + +      PV FLGVGE  + LEPF  +  +
Sbjct: 232 TAKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPVKFLGVGEKTDALEPFHPERIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|93006809|ref|YP_581246.1| signal recognition particle protein [Psychrobacter cryohalolentis
           K5]
 gi|92394487|gb|ABE75762.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Psychrobacter cryohalolentis K5]
          Length = 515

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 158/309 (51%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I  + +L +D +++ L ++   L+ +D+ + V +  V     KR  
Sbjct: 2   FDTLTERLSSSLRNIAGTGQLTEDNIKDTLREVRMALLEADVALPVTRDFV-----KRVK 56

Query: 77  KDVSVQRVLYDVS------ELIHKMLMPLSKPFNW--DFSHRPHVI-LVVGVNGVGKTTV 127
           +      VL +++      +++H  L  +    N   + + +P VI L+ G+ G GKTT 
Sbjct: 57  EQALGAEVLKELAPGQAFVKIVHDELTEMMGSANQQLEMTGKPPVIYLLAGLQGAGKTTT 116

Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GKL+K + +    KVML + D +R AAI QL+  A + +A FV S    +   +A  A 
Sbjct: 117 AGKLAKFLQERHKKKVMLVSADVYRPAAIAQLEQVAGQVNAKFVNSSSDENPIDIALRAI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D+LIIDTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A 
Sbjct: 177 EEAKIQYQDILIIDTAGRLAIDETMMDEIKALTAAVN------PSETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+I+TK DG ARGG  + +      P+ FLG GE ++ LE F  +  
Sbjct: 231 NTAKAFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLDALELFHPERI 290

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 291 AQRILGMGD 299


>gi|195941513|ref|ZP_03086895.1| signal recognition particle protein (ffh) [Borrelia burgdorferi
           80a]
          Length = 444

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 15/276 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103
           E +++ L+ +D+ + V ++ +  ++ +  +K V V R +   S+ I  +   L K     
Sbjct: 32  EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89

Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           N++ S  P      IL++G+ G GKTT   KLS K+     KV+L A DTFR+AA++QLK
Sbjct: 90  NYELSLHPTNKQSYILMLGLQGSGKTTTCAKLSLKLKKENRKVLLVAADTFRAAAVEQLK 149

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I   +        E   D   +   + K A++   D +I+DT GRL   S+L+  I K+ 
Sbjct: 150 ILGGQVGVPVFSIEGEKDPIKIVKASMKFAESNFFDSVIVDTRGRLEIESLLVEEIKKIK 209

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            +L+      P   + V+D+  GQ A+   + F+   G TG I +K D   RGG ++   
Sbjct: 210 GILQ------PAETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +P+ F+GVGE I DL+ F  +  ++ I G  D
Sbjct: 264 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 299


>gi|199597126|ref|ZP_03210558.1| Signal recognition particle GTPase [Lactobacillus rhamnosus HN001]
 gi|258508639|ref|YP_003171390.1| signal recognition particle protein [Lactobacillus rhamnosus GG]
 gi|199591930|gb|EDZ00005.1| Signal recognition particle GTPase [Lactobacillus rhamnosus HN001]
 gi|257148566|emb|CAR87539.1| Signal recognition particle protein [Lactobacillus rhamnosus GG]
 gi|259649945|dbj|BAI42107.1| signal recognition particle protein [Lactobacillus rhamnosus GG]
          Length = 478

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 155/316 (49%), Gaps = 22/316 (6%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E LS   +L K F+    K K   +D+  + R       E+   L+ +D+   V + 
Sbjct: 1   MAFEGLS--ERLQKAFSGLRRKGKVSESDVRDAMR-------EIRLALLEADVNFDVVKT 51

Query: 66  IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++ + TK    +V       Q+++  V++ + K +   + P N    H P VI++ G+ 
Sbjct: 52  FIKNVRTKAVGSEVLESLTPAQQIIKIVNDELVKTMGEAAVPLNK-APHIPTVIMMAGLQ 110

Query: 121 GVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT +GKLSK  M +   + +L A D +R AAIDQL+    + +         +D  
Sbjct: 111 GAGKTTTVGKLSKYLMENEKARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDTDPV 170

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +  +    A+  K D ++IDTAGRL  +  LM  + K I+ L       P+ +L V+DA
Sbjct: 171 EIVRQGLATAKENKNDYVLIDTAGRLQIDEKLMTEL-KNIKELAH-----PNDILLVVDA 224

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ A+   + F+     TG+++TK+DG  RGG  + I      P+ F+G GE ++ L+
Sbjct: 225 MTGQAAVDVAKGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALD 284

Query: 300 PFVAKDFSAVITGCLD 315
            F     +  I G  D
Sbjct: 285 VFYPDRMANRILGMGD 300


>gi|146276232|ref|YP_001166391.1| signal recognition particle protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554473|gb|ABP69086.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 501

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 139/269 (51%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+ +  K   + V+      Q+V+  V + +  +L           
Sbjct: 38  LLEADVSLPVARDFVKRVQEKATGQGVTKSVTPGQQVVKIVHDELVTVLRGEGPADALKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT   KL+K++S+  G +V++A+ DT R AA++QL+I   +  
Sbjct: 98  DNPPATILMVGLQGSGKTTTTAKLAKRLSEKQGKRVLMASLDTNRPAAMEQLQILGAQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G  A  +A  A  Q      DV+++DTAGRLH + +LM  + + +R     D
Sbjct: 158 VDTLPIVKGETAVQIAKRAKTQGSMGGYDVIMLDTAGRLHIDEVLMDEV-QAVR-----D 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ+A+     F    G +G+++T+MDG  RGG  + +      P+
Sbjct: 212 LAQPRETLLVVDGLTGQDAVNVAAEFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F     +  I G  D
Sbjct: 272 RFVGLGEKMDALETFEPDRIAGRILGMGD 300


>gi|284045135|ref|YP_003395475.1| signal recognition particle protein [Conexibacter woesei DSM 14684]
 gi|283949356|gb|ADB52100.1| signal recognition particle protein [Conexibacter woesei DSM 14684]
          Length = 444

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+  ++D+ S   L +D V   + ++   L+ +D+   V ++    +  +   
Sbjct: 2   FDSLAEKLQATLSDVRSRGTLTEDDVNAAMREIRLALLEADVNFKVVKRFTNAVKERALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+V+  V++ + +++   S    +  S  P VIL+ G+ G GKTT   KL
Sbjct: 62  SDVIGQLNPGQQVVKIVNDELAELMGGESAELRFS-SSPPTVILMAGLQGSGKTTATAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +     V +AA D +R AA++QL     R  AD       +D   +A  A ++A+
Sbjct: 121 ARLLREQNRSSVAVAACDVYRPAAVEQLITVGARAGADVYERGTDADPVEIAKWARERAE 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH +  LM  + ++ RV        P +VL V+DA TGQ+A+   E
Sbjct: 181 REGKDVLIVDTAGRLHVDENLMKELAEIKRVTN------PTNVLLVVDAMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F  V    G++M+K+DG ARGG  + +      P+ F   GE ++  E F     +  I
Sbjct: 235 QFAEVVQFDGVVMSKLDGDARGGAALSVKSVTGKPILFASTGEKLDQFERFHPDRMAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|297852530|ref|XP_002894146.1| signal recognition particle 54 kDa protein 3 [Arabidopsis lyrata
           subsp. lyrata]
 gi|297852532|ref|XP_002894147.1| signal recognition particle 54 kDa protein 3 [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339988|gb|EFH70405.1| signal recognition particle 54 kDa protein 3 [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339989|gb|EFH70406.1| signal recognition particle 54 kDa protein 3 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 496

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 141/290 (48%), Gaps = 19/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86
           II  + L++ + E +   L++SD+   + +       KIV  E L   + K   +++ ++
Sbjct: 22  IIDEKALNECLNE-ITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             SEL  KML P  KP       +  V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  --SELC-KMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ A DQLK  A +    F  S   SD   +A E     + +  D++I+DT+GR  
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHK 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
             + L   + ++    K      P  V+ V+D++ GQ A  Q + F        +I+TKM
Sbjct: 197 QEATLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKM 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           DG A+GGG +  V   K PV F+G GE +++ E F  K F + + G  D+
Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300


>gi|238765364|ref|ZP_04626288.1| Signal recognition particle protein [Yersinia kristensenii ATCC
           33638]
 gi|238696406|gb|EEP89199.1| Signal recognition particle protein [Yersinia kristensenii ATCC
           33638]
          Length = 453

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 116/212 (54%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +   K V++ + D +R AAI QL+  A+   
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +  +A +QA+ K  DVLI+DTAGRLH +  +M  I ++        
Sbjct: 157 IDFFPSDVQEKPIDIVNQALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQV-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 268 KPIKFLGVGEKSDALEPFHPDRVASRILGMGD 299


>gi|269797639|ref|YP_003311539.1| signal recognition particle protein [Veillonella parvula DSM 2008]
 gi|269094268|gb|ACZ24259.1| signal recognition particle protein [Veillonella parvula DSM 2008]
          Length = 450

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 157/317 (49%), Gaps = 34/317 (10%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+E    +    ++ +D V   L  +   L+ +D+   VA+  V+ +  K   
Sbjct: 3   FDSLSEKLQEAFQSLKGKGKITEDDVNLALRQVRTALLEADVNFMVAKDFVKSIKEKALG 62

Query: 77  KDV-----SVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++V       Q V+  V++ +  +L       M  SKP        P +I++VG+ G GK
Sbjct: 63  EEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMISSKP--------PTIIMLVGLQGAGK 114

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183
           TT  GKL+  +   G + ML A D +R AAI QL++   +        E  G++   +A 
Sbjct: 115 TTTAGKLAVYLRKQGKRPMLVAADVYRPAAITQLQVVGKQIDIPVFSDETPGANPVDIAR 174

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A +Q+     DV+IIDTAGRL  + +LM  +  +   ++      PH +L V+D+  GQ
Sbjct: 175 RAVEQSTHMLKDVVIIDTAGRLAIDEVLMDELSNIKAAVR------PHEILLVVDSMIGQ 228

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A+   + F+   G  G+I+TK+DG ARGG  + I     +P+ F GV E ++  + F  
Sbjct: 229 DAVTTAQTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFYP 288

Query: 304 KDFSAVITGCLDYGEEK 320
              ++ I   LD G+ K
Sbjct: 289 DRMASRI---LDLGDFK 302


>gi|317177900|dbj|BAJ55689.1| signal recognition particle protein [Helicobacter pylori F16]
          Length = 448

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|219849542|ref|YP_002463975.1| signal recognition particle protein [Chloroflexus aggregans DSM
           9485]
 gi|219543801|gb|ACL25539.1| signal recognition particle protein [Chloroflexus aggregans DSM
           9485]
          Length = 450

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 144/284 (50%), Gaps = 17/284 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM 97
           +D VRE ++ +   L+ +D+   V +  V ++  K   ++V+     +  V +++H+ L+
Sbjct: 24  EDDVREAMKQVRLALLEADVNFRVVKDFVAKVTEKAIGEEVTKSLTPHQQVIKIVHQELI 83

Query: 98  PLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            L    +         P VI++VG+ G GKTT+  KL+  +   G +V+L A D +R AA
Sbjct: 84  NLLGTEHVPLQEARPGPTVIMLVGLQGTGKTTLAAKLALHLRKKGKRVLLVAADVYRPAA 143

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           I QL+    + +         +    +A  A + A+ +  +V+IIDTAGRL  +  LM  
Sbjct: 144 ITQLQALGRQLNIPVYSEGTQASPPDIAEHALEHARKELFNVVIIDTAGRLQIDEPLMQE 203

Query: 215 IGKM-IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
           + ++  RV        P   L V+DA TGQ A+R  E F+     TG++MTKMDG ARGG
Sbjct: 204 LEQIEARV-------HPTERLLVVDAMTGQEAVRVAETFNQRVKLTGVVMTKMDGDARGG 256

Query: 274 GLIPIVVTHKIPVYFLGVGEGI--NDLEPFVAKDFSAVITGCLD 315
             + +     +P+ FL  GE +  N LE F     ++ I G  D
Sbjct: 257 AALSVRAVTGVPIKFLSTGEKVDGNTLEIFHPDRLASRILGMGD 300


>gi|217034229|ref|ZP_03439647.1| hypothetical protein HP9810_2g8 [Helicobacter pylori 98-10]
 gi|216943289|gb|EEC22751.1| hypothetical protein HP9810_2g8 [Helicobacter pylori 98-10]
          Length = 448

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGIAYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|315587040|gb|ADU41421.1| signal recognition particle protein [Helicobacter pylori 35A]
 gi|332673948|gb|AEE70765.1| signal recognition particle protein [Helicobacter pylori 83]
          Length = 448

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|298500684|ref|ZP_07010487.1| signal recognition particle protein [Vibrio cholerae MAK 757]
 gi|297540465|gb|EFH76523.1| signal recognition particle protein [Vibrio cholerae MAK 757]
          Length = 461

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 152/307 (49%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A+    DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  D  ++DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDAQLVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|257457465|ref|ZP_05622633.1| signal recognition particle protein [Treponema vincentii ATCC
           35580]
 gi|257445088|gb|EEV20163.1| signal recognition particle protein [Treponema vincentii ATCC
           35580]
          Length = 442

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 146/308 (47%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----E 68
            + K+T  F+    K+    T  I+ + +++ V EE++  L+ +D+ + V ++ +    E
Sbjct: 1   MLEKITNTFSGIVRKISGKAT--ITEKNIEEAV-EEIKIALLEADVNLRVVRRFINATIE 57

Query: 69  ELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E   +   K V+  Q+ +  V + I   L    K           VIL +G+ G GKTT 
Sbjct: 58  EAKGEAVLKSVNPGQQFVKIVHDKILSFLGDEKKSLQLKGPDTQSVILFLGLQGSGKTTS 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+ ++   G K +L A D  R AA++QL    +R     V  E   DA  +A  A  
Sbjct: 118 AAKLAARLKKEGRKPLLVACDLVRPAAVEQLFSLGERIDVP-VYKEDTKDAVRVAQNAVT 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    D +I+DTAGRL  +  +M  I  + + +       P   L V DA TGQNA  
Sbjct: 177 FARKNGFDTVIVDTAGRLQIDEAMMKEIAAVKKAVN------PVETLLVADAMTGQNAAE 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F   AG TG+I+TK D  ARGG  + +      P+ ++GVGE I D EPF     +
Sbjct: 231 VAKAFDEQAGLTGVILTKFDSDARGGAALSLKTVTGKPILYVGVGEKIEDFEPFYPDRIA 290

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 291 GRILGMGD 298


>gi|34499288|ref|NP_903503.1| signal recognition particle protein [Chromobacterium violaceum ATCC
           12472]
 gi|34105139|gb|AAQ61495.1| signal recognition particle protein [Chromobacterium violaceum ATCC
           12472]
          Length = 451

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 150/289 (51%), Gaps = 20/289 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           ++   + D +RE +   L+ +D+ + V +  + ++  +   +DV       Q ++  V+E
Sbjct: 22  LTESNIQDAMRE-VRMALLEADVALPVVKTFIAQVKERALGQDVMGSLTPGQALVGVVNE 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT 149
            + K++   +   N   +  P ++L+ G+ G GKTT +GKL+K++ +    KV++ + D 
Sbjct: 81  ELVKLMGDKNDELNL-AAVPPAIVLMAGLQGAGKTTTVGKLAKRLKETQKKKVLVVSADV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK+ A +   ++  S+       +A  A   A+    DVL++DTAGRL  + 
Sbjct: 140 YRPAAIEQLKLLASQVGVEWFPSDEKQKPVDIARAAIDHARRHFFDVLLVDTAGRLAIDE 199

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +M  I  +         HA   P   L V+DA  GQ+A+   + F+     TG+I+TKM
Sbjct: 200 AMMEEIKAL---------HAAINPVETLFVVDAMQGQDAVNTAKAFNEALPLTGVILTKM 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG +RGG  + +      P+ F+GVGE +  +EPF     ++ I G  D
Sbjct: 251 DGDSRGGAALSVRHVTGKPIKFIGVGEKVAAIEPFHPDRIASRILGMGD 299


>gi|315452863|ref|YP_004073133.1| signal recognition particle protein [Helicobacter felis ATCC 49179]
 gi|315131915|emb|CBY82543.1| signal recognition particle protein [Helicobacter felis ATCC 49179]
          Length = 443

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 144/270 (53%), Gaps = 9/270 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +EL+  L+R+D+   VA+++V+ +  K  AK +  Q+ L  + E + ++L        + 
Sbjct: 30  DELKKALLRNDVHHKVAKELVKNIEAKTKAKGIGKQQFLDSLQESLLEILSVPGASSGFV 89

Query: 107 FSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           ++  P  ++L+ G+ G GKTT   KL+  +     KV+L A D  R AAI+QL++  ++ 
Sbjct: 90  YAPTPPTIVLMCGLQGGGKTTTCAKLANYLKTRHKKVLLVACDLERLAAIEQLQVLGEQI 149

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             +    E       +A  A K+AQ  + DV+I+D+AGRL  +  LM    + ++ LK L
Sbjct: 150 GIEVYHQE--GSVLDIAKGALKRAQEGQFDVVIVDSAGRLAIDKPLM----EELKALKNL 203

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P     V DA +GQ+ +R  + FH   G +G++++K D  ++GG  + I    +IP
Sbjct: 204 --LNPLETFYVADALSGQDGVRSAQTFHTEIGLSGVVLSKFDSDSKGGVALGIAHQLQIP 261

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G GE I DL+ FV    +  + G  D
Sbjct: 262 LRFIGHGEKIPDLDVFVPDRIAQRLMGAGD 291


>gi|324502545|gb|ADY41120.1| Signal recognition particle 54 kDa protein [Ascaris suum]
          Length = 503

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 10/235 (4%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           +QR ++  +EL+ K++ P  KP+      +P+V + VG+ G GKTT   KL+      G 
Sbjct: 75  IQRCVF--TELM-KLVDPGVKPYQPT-KGKPNVFMFVGLQGSGKTTTCTKLAYYYQKKGW 130

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K  L   DTFR+ A DQLK  A +    +  S I  D   +A     + + +  +++I+D
Sbjct: 131 KTCLICADTFRAGAFDQLKQNATKARIPYYGSYIEMDPVVIATNGVDKFKGEGFEIIIVD 190

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           T+GR    + L     +M++V   +   +P++V+ V+DA+ GQ    Q   F        
Sbjct: 191 TSGRHKQEASLFE---EMLQVSNAI---SPNNVVFVMDASIGQACEAQARAFSTTVDVGS 244

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+D  A+GGG +  V   + P+ F+G GE I+D EPF  K F   + G  D
Sbjct: 245 VIITKLDSHAKGGGALSAVAATRSPIIFIGTGEHIDDFEPFEVKPFVQKLLGMGD 299


>gi|308183255|ref|YP_003927382.1| signal recognition particle protein [Helicobacter pylori PeCan4]
 gi|308065440|gb|ADO07332.1| signal recognition particle protein [Helicobacter pylori PeCan4]
          Length = 448

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFHEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|515681|gb|AAA66200.1| signal recognition particle 54 kDa subunit [Arabidopsis thaliana]
          Length = 495

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 141/290 (48%), Gaps = 19/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86
           II  + L++ + E +   L++SD+   + +       KIV  E L   + K   +++ ++
Sbjct: 22  IIDEKALNECLNE-ITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             SEL  KML P  KP       +  V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  --SELC-KMLDP-GKPAFAPKKRKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ A DQLK  A +    F  S   SD   +A E     + +  D++I+DT+GR  
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHK 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
             + L   + ++    K      P  V+ V+D++ GQ A  Q + F        +I+TKM
Sbjct: 197 QEASLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKM 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           DG A+GGG +  V   K PV F+G GE +++ E F  K F + + G  D+
Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300


>gi|261838478|gb|ACX98244.1| signal recognition particle protein [Helicobacter pylori 51]
          Length = 448

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSTKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|126734928|ref|ZP_01750674.1| signal recognition particle protein [Roseobacter sp. CCS2]
 gi|126715483|gb|EBA12348.1| signal recognition particle protein [Roseobacter sp. CCS2]
          Length = 501

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 144/283 (50%), Gaps = 15/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           DD V+  L ++   L+ +D+ + VA+  ++ +  K   + V+      Q+V+  V + + 
Sbjct: 24  DDDVKTALREVRVALLEADVSLPVARDFIKAVQEKATGQAVTKSITPGQQVVKIVHDELQ 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRS 152
            +L     P      + P  IL+VG+ G GKTT   KL+K++ +  G +V++A+ DT R 
Sbjct: 84  HVLTGDEDPGALKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKEKEGKRVLMASLDTNRP 143

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA++QL I   +   D +    G D   +A  A  QA     DV ++DTAGRLH +  L+
Sbjct: 144 AAMEQLAILGGQIGVDTLPIVQGEDPVKIAKRAKTQASLGGYDVYMLDTAGRLHIDQELI 203

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
           A    +       D   P   L V+D  TGQ+A+   + F    G +G+++T+MDG  RG
Sbjct: 204 AQAAAV------RDVANPRETLLVVDGLTGQDAVNVAQEFDDKIGVSGVVLTRMDGDGRG 257

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F+G+GE ++ +E F  +  +  I G  D
Sbjct: 258 GAALSMRAITGKPIRFVGLGEKMDAIETFEPERIAGRILGMGD 300


>gi|288931995|ref|YP_003436055.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Ferroglobus placidus DSM 10642]
 gi|288894243|gb|ADC65780.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Ferroglobus placidus DSM 10642]
          Length = 431

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 108/211 (51%), Gaps = 8/211 (3%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           +D   +   I++VG+ G GKTT   K++K   D G+K  + AGDT R AA +QLK  A++
Sbjct: 86  FDIPLKKSKIMLVGLQGSGKTTTAAKIAKYFKDKGMKAAVIAGDTHRPAAYEQLKQLAEQ 145

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
               F   +   DA  +  E  +    K  DV++IDTAGR      L+  + ++  V K 
Sbjct: 146 AGLGFFGKKEEKDAVKIVKEGLEAL--KDYDVIVIDTAGRHALEEELIEEMKRIAEVSK- 202

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P     VLDA+ GQ A +Q E F+   G   +++TK DGTA+GGG +       I
Sbjct: 203 -----PDYKFLVLDASIGQLASKQAEAFNEAVGIDAIVITKFDGTAKGGGALSAARLIGI 257

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE I D E F    F + + G  D
Sbjct: 258 PIAFIGTGEKIEDFEKFDPAGFVSRLLGMGD 288


>gi|85708915|ref|ZP_01039981.1| signal recognition particle GTPase [Erythrobacter sp. NAP1]
 gi|85690449|gb|EAQ30452.1| signal recognition particle GTPase [Erythrobacter sp. NAP1]
          Length = 493

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 152/291 (52%), Gaps = 19/291 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           +S + + D +RE +   L+ +D+ + VA++ ++ +  K   ++V         V ++++D
Sbjct: 22  LSEQDVRDAMRE-VRVALLEADVALPVAKRFIDSVTEKAIGQEVLKAVKPGQQVVKIVHD 80

Query: 88  --VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVML 144
             V+ L  +     ++  N D +  P VI++VG+ G GKTT   KL K + +  G K M+
Sbjct: 81  ELVAMLSGEEGEGATEGLNLD-AKPPVVIMMVGLQGSGKTTTTAKLGKLIRERHGKKAMM 139

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           A+ D  R AA +QL +  ++T    +    G     +A  A + A+ +  DVL++DTAGR
Sbjct: 140 ASLDVNRPAAQEQLAVLGEQTQVATLPVIAGQQPVDIARRAMESARLQNFDVLLLDTAGR 199

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LH +  LMA +  + +V       AP  VL V+D+ TGQ+A+   + F      TG+++T
Sbjct: 200 LHVDEALMAEMKAVSQV------SAPTEVLLVVDSLTGQDAVNVAQSFSGEVPLTGVVLT 253

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +MDG ARGG  + +      P+ F G GE ++ +E F     +  I G  D
Sbjct: 254 RMDGDARGGAALSMRAVTGKPIKFAGTGEKLDAIETFRPGSVADRILGMGD 304


>gi|78212426|ref|YP_381205.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Synechococcus sp. CC9605]
 gi|78196885|gb|ABB34650.1| signal recognition particle protein [Synechococcus sp. CC9605]
          Length = 492

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 144/285 (50%), Gaps = 26/285 (9%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLM--- 97
           DG  +++   L+ +D+ + V ++ V ++  K    +V V+ V  D    +++H+ L+   
Sbjct: 28  DGALKDVRRALLEADVSLPVVKEFVADVRDKAVGAEV-VRGVSPDQKFIQVVHEQLVEVM 86

Query: 98  -----PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                PL+K  +      P V+L+ G+ G GKTT   KL   + D G + ++   D +R 
Sbjct: 87  GGDNAPLAKAADA-----PTVVLMAGLQGAGKTTATAKLGLHLKDQGRRALMVGADVYRP 141

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           AAI+QLK        D     +G++A    +A     +A+ +  D L++DTAGRL  ++ 
Sbjct: 142 AAIEQLKTLG--AQIDVEVFSLGAEAKPEDIAAAGLAKAKEEGFDTLLVDTAGRLQIDTE 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M    +M+R+   + P     VL V+D+  GQ A      FH   G TG ++TK+DG +
Sbjct: 200 MME---EMVRIRTAVQPD---EVLLVVDSMIGQEAAELTRAFHDQVGITGAVLTKLDGDS 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 254 RGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298


>gi|86137223|ref|ZP_01055801.1| signal recognition particle protein [Roseobacter sp. MED193]
 gi|85826547|gb|EAQ46744.1| signal recognition particle protein [Roseobacter sp. MED193]
          Length = 509

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 141/269 (52%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVA----QKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA    +K+ E+   +   K V+  Q+V+  V + + ++L           
Sbjct: 38  LLEADVSLPVARDFVKKVQEQATGQSVTKSVTPGQQVVKIVHDALVEVLRGNEDLGTLKV 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT  GKL+K++ D  G +V++A+ D +R AA+DQL +   +  
Sbjct: 98  DNPPAPILMVGLQGSGKTTTTGKLAKRLKDKEGKRVLMASLDVYRPAAMDQLAVLGAQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G     +A  A +QA     DV ++DTAGRL  + +LM  +  +  V+    
Sbjct: 158 VDTLPIVAGQKPVDIAKRAKQQAALGGYDVYMLDTAGRLQIDEVLMQEVEDVRDVV---- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             +P   L V+D  TGQ A+   E F A  G +G+++T+MDG  RGG  + +      P+
Sbjct: 214 --SPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ +E F  +  +  I G  D
Sbjct: 272 RFVGLGEKMDAIETFEPERVAGRILGMGD 300


>gi|307637821|gb|ADN80271.1| Signal recognition particle [Helicobacter pylori 908]
          Length = 448

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLSGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFHEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|125996652|gb|ABN60727.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           baltica OS155]
          Length = 478

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL ++ V+E L ++   L+ +D+ + V ++ V  +  +   
Sbjct: 23  FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 82

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + K +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 83  QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVIMMAGLQGAGKTTSVAKL 141

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K V++ + D +R AAI QL+  A   + +F  S++      +A  A   A+
Sbjct: 142 GKFLRERHKKSVLVVSADVYRPAAIKQLETLAQEVAVEFFPSDVSQKPIDIAKAAIAHAK 201

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 202 LKFIDVVILDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 255

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 256 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 315

Query: 311 TGCLD 315
            G  D
Sbjct: 316 LGMGD 320


>gi|242091039|ref|XP_002441352.1| hypothetical protein SORBIDRAFT_09g025050 [Sorghum bicolor]
 gi|241946637|gb|EES19782.1| hypothetical protein SORBIDRAFT_09g025050 [Sorghum bicolor]
          Length = 482

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 111/228 (48%), Gaps = 7/228 (3%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           V + I +ML P  KP       +P++++ VG+ G GKTT   K +      G    L   
Sbjct: 79  VVDEIRRMLDP-GKPSFTPSKGKPNLVMFVGLQGSGKTTTCTKYADYHRRKGFNPALVCA 137

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+ A DQLK  A +    F  S   SD   +A E     + +K D++I+DT+GR   
Sbjct: 138 DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDMFRKEKCDLIIVDTSGRHKQ 197

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + L   + ++    K      P  V+ V+D + GQ A  Q + F   A    +I+TKMD
Sbjct: 198 EAALFEEMRQVSEATK------PDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIVTKMD 251

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G A+GGG +  V   K PV F+G GE I D E F    F + + G  D
Sbjct: 252 GHAKGGGALSAVAATKSPVIFIGTGEHILDFEVFEVNPFVSRLLGMGD 299


>gi|317180883|dbj|BAJ58669.1| signal recognition particle protein [Helicobacter pylori F32]
          Length = 448

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|259046590|ref|ZP_05736991.1| signal recognition particle protein [Granulicatella adiacens ATCC
           49175]
 gi|259036755|gb|EEW38010.1| signal recognition particle protein [Granulicatella adiacens ATCC
           49175]
          Length = 478

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 142/271 (52%), Gaps = 17/271 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  V ++  +    +V       Q+V+  V+E + +++     PF ++ 
Sbjct: 39  LLEADVNFKVVKDFVRKVNERALGANVLEALSPAQQVVKIVNEELTELMGGEQAPFRFE- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+++VG+ G GKTT  GKL+  M+    K  +L A D +R AAIDQL+    +  
Sbjct: 98  AKPPTVVMMVGLQGAGKTTTAGKLASFMAKHEKKRPLLVAADVYRPAAIDQLQTLGKQL- 156

Query: 167 ADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            +F    +G+  +   +A +A ++A+    D++IIDTAGRLH +  LM  +  +  V   
Sbjct: 157 -NFPVFSLGNQVSPVEIAKQAIEKAKIDGRDLVIIDTAGRLHIDETLMEELQNIKAVAN- 214

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  +L V+D+ TGQ+A+   + F+     TG+I+TK+DG  RGG  + I      
Sbjct: 215 -----PSEILLVVDSMTGQDAVNVAQTFNERLDITGVILTKLDGDTRGGAALSIRSVTGK 269

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F G GE + D E F  +  ++ I G  D
Sbjct: 270 PIKFTGRGEKLEDFEIFYPERMASRILGMGD 300


>gi|145324887|ref|NP_001077690.1| signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)
           [Arabidopsis thaliana]
 gi|332194243|gb|AEE32364.1| signal recognition particle subunit SRP54 [Arabidopsis thaliana]
          Length = 431

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 141/290 (48%), Gaps = 19/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86
           II  + L++ + E +   L++SD+   + +       KIV  E L   + K   +++ ++
Sbjct: 22  IIDEKALNECLNE-ITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             SEL  KML P  KP       +  V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  --SELC-KMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ A DQLK  A +    F  S   SD   +A E     + +  D++I+DT+GR  
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHK 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
             + L   + ++    K      P  V+ V+D++ GQ A  Q + F        +I+TKM
Sbjct: 197 QEASLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKM 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           DG A+GGG +  V   K PV F+G GE +++ E F  K F + + G  D+
Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300


>gi|317009762|gb|ADU80342.1| signal recognition particle protein [Helicobacter pylori India7]
          Length = 448

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 155/295 (52%), Gaps = 15/295 (5%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           Q+ L  + + + ++L  +     + F+  P  V+L+ G+ G GKTT   KL+  +     
Sbjct: 65  QQFLDALEKSLLEIL-SVKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNK 123

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL++D
Sbjct: 124 KVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIASNALKRAKEAQFDVLLVD 182

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           +AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +G
Sbjct: 183 SAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVSG 236

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 237 VVLSKFDSDSKGGIALGIAYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|282850086|ref|ZP_06259468.1| signal recognition particle protein [Veillonella parvula ATCC
           17745]
 gi|294795144|ref|ZP_06760278.1| signal recognition particle protein [Veillonella sp. 3_1_44]
 gi|282580275|gb|EFB85676.1| signal recognition particle protein [Veillonella parvula ATCC
           17745]
 gi|294453936|gb|EFG22311.1| signal recognition particle protein [Veillonella sp. 3_1_44]
          Length = 450

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 157/317 (49%), Gaps = 34/317 (10%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+E    +    ++ +D V   L  +   L+ +D+   VA+  V+ +  K   
Sbjct: 3   FDSLSEKLQEAFQSLKGKGKITEDDVNLALRQVRTALLEADVNFMVAKDFVKSIKEKALG 62

Query: 77  KDV-----SVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++V       Q V+  V++ +  +L       M  SKP        P +I++VG+ G GK
Sbjct: 63  EEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMISSKP--------PTIIMLVGLQGAGK 114

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183
           TT  GKL+  +   G + ML A D +R AAI QL++   +        E  G++   +A 
Sbjct: 115 TTTAGKLAVYLRKQGKRPMLVAADVYRPAAITQLQVVGKQIDIPVFSDETPGANPVDIAR 174

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A +Q+     DV+IIDTAGRL  + +LM  +  +   ++      PH +L V+D+  GQ
Sbjct: 175 RAVEQSTHMLKDVVIIDTAGRLAIDEVLMDELSNIKAAVR------PHEILLVVDSMIGQ 228

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A+   + F+   G  G+I+TK+DG ARGG  + I     +P+ F GV E ++  + F  
Sbjct: 229 DAVTTAQTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFYP 288

Query: 304 KDFSAVITGCLDYGEEK 320
              ++ I   LD G+ K
Sbjct: 289 DRMASRI---LDLGDFK 302


>gi|229552446|ref|ZP_04441171.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539816|ref|YP_003174315.1| signal recognition particle protein [Lactobacillus rhamnosus Lc
           705]
 gi|229314183|gb|EEN80156.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151492|emb|CAR90464.1| Signal recognition particle protein [Lactobacillus rhamnosus Lc
           705]
          Length = 478

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 155/316 (49%), Gaps = 22/316 (6%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E LS   +L K F+    K K   +D+  + R       E+   L+ +D+   V + 
Sbjct: 1   MAFEGLS--ERLQKAFSGLRRKGKVSESDVRDAMR-------EIRLALLEADVNFDVVKT 51

Query: 66  IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++ + TK    +V       Q+++  V++ + K +   + P N    H P VI++ G+ 
Sbjct: 52  FIKNVRTKAVGSEVLESLTPAQQIIKIVNDELVKTMGEAAVPLNK-APHIPTVIMMAGLQ 110

Query: 121 GVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT +GKLSK  M +   + +L A D +R AAIDQL+    + +         +D  
Sbjct: 111 GAGKTTTVGKLSKYLMENEKARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDTDPV 170

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +  +    A+  K D ++IDTAGRL  +  LM  + K I+ L       P+ +L V+DA
Sbjct: 171 EIVRQGLATAKENKNDYVLIDTAGRLQIDEKLMTEL-KNIKELAH-----PNDILLVVDA 224

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ A+   + F+     TG+++TK+DG  RGG  + I      P+ F+G GE ++ L+
Sbjct: 225 MTGQAAVDVAKGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALD 284

Query: 300 PFVAKDFSAVITGCLD 315
            F     +  I G  D
Sbjct: 285 VFYPDRMANRILGMGD 300


>gi|126283547|ref|XP_001363021.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 504

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KPNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|33862622|ref|NP_894182.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9313]
 gi|33634538|emb|CAE20524.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9313]
          Length = 497

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 13/231 (5%)

Query: 90  ELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           +++H+ L+ +    N   +     P V+L+ G+ G GKTT   KL   + D G + ++ A
Sbjct: 76  QVVHQQLVEVMGGDNAPMAEAEDSPTVVLMAGLQGAGKTTATAKLGLHLKDQGQRPLMVA 135

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGR 204
            D +R AAIDQL+   ++   D     +G D     +A     +A+ +  D L++DTAGR
Sbjct: 136 ADVYRPAAIDQLRTLGEQIGVDVFS--LGDDVKPEEIAAAGLAKAREEGFDTLLVDTAGR 193

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           L  ++ +M    +M+R+   ++P     VL V+D+  GQ A      FH   G TG ++T
Sbjct: 194 LQIDTEMME---EMVRIRSAVEPD---EVLLVVDSMIGQEAAELTRAFHDKVGITGSVLT 247

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           K+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 248 KLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298


>gi|15604048|ref|NP_220563.1| signal recognition particle protein [Rickettsia prowazekii str.
           Madrid E]
 gi|6226156|sp|Q9ZDZ0|SRP54_RICPR RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|3860739|emb|CAA14640.1| SIGNAL RECOGNITION PARTICLE PROTEIN (ffh) [Rickettsia prowazekii]
 gi|292571768|gb|ADE29683.1| Signal recognition particle protein [Rickettsia prowazekii Rp22]
          Length = 449

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 154/290 (53%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89
           I++  ++D  +R+ +   L+ SD+ + V +  +EE+  K   ++V  SV   Q ++  + 
Sbjct: 21  ILTENQIDTAMRD-VRVALLESDVALPVIKGFIEEVKQKALGQEVIKSVSPGQMIIKIIH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P V +L+VG+ G GKTT  GKL+ ++ +   KV+L + D
Sbjct: 80  EEMINLLASTESTTKLNLNAKPPVNLLIVGLQGGGKTTASGKLALRLKNQNKKVLLVSLD 139

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL I A+  + D +    G     +   A  +AQ    DV+I DTAGR+  +
Sbjct: 140 TYRPAAQEQLAIIANSVNIDSLPIVKGEKPLDIVKRAIGEAQISAYDVVIYDTAGRIQID 199

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           +++M     + ++L       P   L V+D+ TGQ+A+   + F      +GLI++++DG
Sbjct: 200 NVMMEEALAIKKILN------PTETLLVIDSMTGQDAVITAKTFSEKLEISGLILSRIDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
             +GG  + +    + P+ FL  GE + DLE F A+  ++ I   LD G+
Sbjct: 254 DTKGGAALSVKYFTQKPIKFLSSGEKLTDLEEFNAERLASRI---LDMGD 300


>gi|330504640|ref|YP_004381509.1| signal recognition particle subunit FFH/SRP54 (SRP54) [Pseudomonas
           mendocina NK-01]
 gi|328918926|gb|AEB59757.1| signal recognition particle subunit FFH/SRP54 (SRP54) [Pseudomonas
           mendocina NK-01]
          Length = 459

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 156/304 (51%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++    +L +D +++ L ++   L+ +D+ + V +  V ++  +   
Sbjct: 2   FENLTDRLSQTLRNVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVGKVKERAVG 61

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLS 132
            +VS          +++   L  L    N D +     P V+L+ G+ G GKTT  GKL+
Sbjct: 62  TEVSKSLTPGQAFVKIVRAELEELMGAANEDLALNAAPPAVVLMAGLQGAGKTTTAGKLA 121

Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +   K V+L + D +R AAI QL+  A      F  S++      +A  A ++A+ 
Sbjct: 122 KFLKERKKKSVLLVSADVYRPAAIKQLETLAGDLGVTFFPSDVSQKPVDIANAAIREAKL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +DV+I+DTAGRL  ++ +MA I  +   +K      P   L V+DA TGQ+A    + 
Sbjct: 182 KFIDVVILDTAGRLAVDTEMMAEIQALHAAVK------PVETLFVVDAMTGQDAANTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG ARGG  + +      P+ F+G+GE  + LEPF     ++ I 
Sbjct: 236 FSDALPLTGVVLTKVDGDARGGAALSVRHITGKPIKFIGMGEKSDALEPFHPDRIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|313904181|ref|ZP_07837560.1| signal recognition particle protein [Eubacterium cellulosolvens 6]
 gi|313470983|gb|EFR66306.1| signal recognition particle protein [Eubacterium cellulosolvens 6]
          Length = 452

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 162/312 (51%), Gaps = 31/312 (9%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++ S  +L +D V+  L+++   L+ +D+   V ++  + +  K   
Sbjct: 3   FESLTDKLQNVFKNLRSKGKLTEDDVKAALKEVKMALLEADVNFKVVKQFTKTVQEKAIG 62

Query: 77  KDVS--------VQRVLYDVSELIHKM-----LMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +DV         V ++++D  EL++ M      +PL KP N D +    VI+++G+ G G
Sbjct: 63  QDVMNGLNPGQMVIKIVHD--ELVNLMGESTTELPL-KPSN-DLT----VIMMIGLQGSG 114

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT + KL+ +M   G K +LAA D +R  AI+QL+I  D+   +          A +A 
Sbjct: 115 KTTTVSKLAGQMKQKGRKPLLAALDVYRPGAIEQLQINGDKVGVEVFSMGNQVKPADIAR 174

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A+  A++   +VL +DTAGRL  +  +M  +   IR   ++D       L V+DA TGQ
Sbjct: 175 AAYDHAKSTGANVLFLDTAGRLQIDESMMEEL-VAIRETIKVDVS-----LLVVDAMTGQ 228

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            A+     F+   G  G+++TKMDG  RGG  + I      P+ ++G+GE ++DLE F  
Sbjct: 229 EAVNVARTFNEKVGIDGVVLTKMDGDTRGGAALSIRAICGKPIMYVGMGEKMSDLEQFYP 288

Query: 304 KDFSAVITGCLD 315
              ++ I G  D
Sbjct: 289 DRMASRILGMGD 300


>gi|302691416|ref|XP_003035387.1| hypothetical protein SCHCODRAFT_74858 [Schizophyllum commune H4-8]
 gi|300109083|gb|EFJ00485.1| hypothetical protein SCHCODRAFT_74858 [Schizophyllum commune H4-8]
          Length = 573

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 144/288 (50%), Gaps = 28/288 (9%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA--------KDVS----VQRVLYDVSE 90
           D   +E+   L+ SD+ V +   +  ++ TK  A        KDV+    +Q+ ++D  E
Sbjct: 29  DATLKEITAALLESDVNVKLVASLRSKVKTKVKAIFEGGDKTKDVNRKNVIQKAVFD--E 86

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L+  ++ P  +P+     H  +VI+ VG+ G GKTT   KL+      G K  +   DTF
Sbjct: 87  LV-ALVDPGVEPYKPKKGHT-NVIMAVGLQGNGKTTTCTKLAVHYQKRGFKSAIVCADTF 144

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+ A DQ +  A +    +  S   +D  ++A +   + + ++ +V+I+DT+GR      
Sbjct: 145 RAGAFDQTRQSATKAKVAYFGSYTETDPVSIAAQGVAKFKKERFEVIIVDTSGRHKQEQE 204

Query: 211 L---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           L   M  IG+ ++         P   + VLDA+ GQ A  Q   F   A    +I+TKMD
Sbjct: 205 LFEEMILIGQAVK---------PDMTILVLDASIGQAAEAQARAFKDSADFGAIIVTKMD 255

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G A+GGG I  V   + P+ FLGVGE ++DL+ F  + F + + G  D
Sbjct: 256 GHAKGGGAISAVAATQTPIIFLGVGEHLHDLDRFAPQPFISKLLGLGD 303


>gi|298345305|ref|YP_003717992.1| signal recognition particle subunit SRP54 [Mobiluncus curtisii ATCC
           43063]
 gi|304390862|ref|ZP_07372814.1| signal recognition particle protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298235366|gb|ADI66498.1| signal recognition particle subunit SRP54 [Mobiluncus curtisii ATCC
           43063]
 gi|304325745|gb|EFL92991.1| signal recognition particle protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 557

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 151/312 (48%), Gaps = 25/312 (8%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT+ F +   K K   +D+       D    ++   LI +D+ + V +     +  K Y
Sbjct: 8   RLTESFKNLRKKGKLKDSDV-------DATVSDIRRALIEADVALEVVKDFTATVKEKAY 60

Query: 76  AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129
               S      Q+++  V++ +  +L    +  ++    + P V ++ G+ G GKTT+ G
Sbjct: 61  GAARSEALNPAQQIVKIVNDELINILGGEDRELHFSKPGKGPTVFMLAGLQGAGKTTLAG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAF 186
           KL K ++    KV+L A D  R  A++QL+I  ++        E G+   D   +A  A 
Sbjct: 121 KLGKWLAKENRKVLLVAADLQRPNAVNQLQIVGEQAGVTVFAPEPGNGVGDPVDVARRAL 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A     DV+I+DTAGRL  +  LMA   + IR     D   P  VL VLDA  GQ+A+
Sbjct: 181 ALASGSGYDVMIVDTAGRLGVDEELMA-QARSIR-----DEVQPDEVLFVLDAMIGQDAV 234

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           R    F      TG+++TK+DG ARGG  + +     +PV F   GEG++D E F A   
Sbjct: 235 RTARAFQEGVDFTGVVLTKLDGDARGGAALSVRGVTGVPVLFASTGEGLDDFERFHADRM 294

Query: 307 SAVITGCLDYGE 318
           ++ I   LD G+
Sbjct: 295 ASRI---LDMGD 303


>gi|146416143|ref|XP_001484041.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 560

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 6/204 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           H+I+ VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A ++   +  
Sbjct: 134 HIIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNATKSLIPYYG 193

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S + +D   +A+E   + + +K D++I+DT+GR      L     +M+++ + +    P 
Sbjct: 194 SYLETDPVKVAHEGVVKFRKEKFDIIIVDTSGRHKQEQSL---FDEMVQISEAVQ---PT 247

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             + V+D + GQ A  Q   F   +    +I+TKMDG A+GGG I  V   + P+ F+G 
Sbjct: 248 QTIMVMDGSIGQAAELQARAFKETSDFGSIILTKMDGHAKGGGAISAVAATQTPIVFIGT 307

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE + DLE F    F + + G  D
Sbjct: 308 GEHVGDLETFRPSAFISKLLGIGD 331


>gi|253702085|ref|YP_003023274.1| signal recognition particle protein [Geobacter sp. M21]
 gi|251776935|gb|ACT19516.1| signal recognition particle protein [Geobacter sp. M21]
          Length = 453

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 148/290 (51%), Gaps = 20/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLY 86
           +++   + D +RE +   L+ +D+   V ++ VE++  +    +V         V ++++
Sbjct: 21  VMTEENVKDALRE-VRLALLEADVNFKVVKEFVEKVRGRAVGTEVLQSLAPGQQVIKIVH 79

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           D  EL+  +LM   +  + D + +P V I++VG+ G GKTT  GKL+K +     K +L 
Sbjct: 80  D--ELV--LLMGGEEDNSLDLAAKPPVAIMLVGLQGAGKTTSCGKLAKFLKAQRKKALLV 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             D +R AAI+QLK+   +   +   SE       +   A + A     DV+I DTAGR 
Sbjct: 136 PADVYRPAAIEQLKVLGRQLDIEVFGSEATQKPLEICRAAHRYATLNGFDVVIFDTAGRH 195

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             +  LM  + + IR     D  AP  +L V DA TGQ A+     F+   G TG+I+TK
Sbjct: 196 QIDDYLMEEL-EAIR-----DELAPREILFVADAMTGQEAVNVASGFNDRLGITGVILTK 249

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +DG A+GG  + I      PV F+G+GE ++ L+ F A    + I G  D
Sbjct: 250 LDGDAKGGAALSIKAVTGKPVKFVGLGEKLDALDVFHADRLVSRILGMGD 299


>gi|210135311|ref|YP_002301750.1| signal recognition particle protein [Helicobacter pylori P12]
 gi|210133279|gb|ACJ08270.1| signal recognition particle protein [Helicobacter pylori P12]
          Length = 448

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|307297779|ref|ZP_07577585.1| signal recognition particle protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306917039|gb|EFN47421.1| signal recognition particle protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 438

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 147/289 (50%), Gaps = 23/289 (7%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV---------EELLTKRYAKDVSVQRVLY 86
           IS + ++D V++ ++  L+ +D+   V ++ +         EE+L K +  D    +++ 
Sbjct: 22  ISEKNIEDAVKQ-VKLSLLEADVNYKVVKEFIGGITEKALGEEVL-KSFTPDQQFIKIVR 79

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           D  ELI KML   S P     S +P  I++VG+ G GKTT   KL   +   G K +L A
Sbjct: 80  D--ELI-KMLGEKSVPLK--LSSQPSKIMMVGLQGSGKTTTTAKLGTLLRKEGRKPLLVA 134

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AAIDQL     +        +   +   +  EA +QA     DV+I+DTAGRLH
Sbjct: 135 ADVYRPAAIDQLMQLGKQIDMPVFTGD-RKNPVKIVQEAMQQAVRNINDVVILDTAGRLH 193

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  +M  + +++  +K      P  +L V+DA TGQ+A+   + F+     +G ++TK+
Sbjct: 194 IDDAMMRELKEIVSAVK------PDEILMVVDAMTGQDAVNSAKAFNEALELSGFVVTKL 247

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG ARGG ++ I      PV F+G+ E  + +E F     +  I G  D
Sbjct: 248 DGDARGGVILSIRHVTGKPVKFIGISEKPDGIEAFHPDRVAGRILGMGD 296


>gi|294944803|ref|XP_002784438.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
 gi|239897472|gb|EER16234.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
          Length = 528

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 147/296 (49%), Gaps = 20/296 (6%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---------VEELLTKRYAKDV 79
           K G   +I    LD+ ++E +   L+++D+ V    ++         +EEL      K  
Sbjct: 16  KLGKATVIDEAVLDECLKE-ISTALLQADVNVRYVAELRKNIKRTVDLEELAAPGSNKQR 74

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
            +Q+ +  V++L+ +ML P  +P+      +P+VI+ VG+ G GKTT   K +      G
Sbjct: 75  VIQKAV--VNQLV-EMLSPDKEPYKPT-KGQPNVIMFVGLQGSGKTTSCTKYAHYYQRKG 130

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            +V L   DTFR+ A DQLK  A +    F  S + SD   +A E     +  K D++I+
Sbjct: 131 WRVALVCADTFRAGAFDQLKQNATKVKIPFYGSYVESDPVKIAKEGVDLFKKDKYDIIIV 190

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DT+GR    + L     +M +V   ++   P+ ++ V+D+  GQ    Q + F       
Sbjct: 191 DTSGRHRQEAAL---FDEMTQVAHAVN---PNDIVFVMDSHIGQACFEQAKAFKDTVSVG 244

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +++TK+DG A+GGG +  V     P+ F+G GE  ++ EPF A+ F   + G  D
Sbjct: 245 SVVVTKLDGHAKGGGALSAVAATDSPIIFIGTGEHFDEFEPFDAQSFVQRLLGLGD 300


>gi|307721676|ref|YP_003892816.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979769|gb|ADN09804.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sulfurimonas
           autotrophica DSM 16294]
          Length = 451

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 140/256 (54%), Gaps = 8/256 (3%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWD 106
           EL+  L+++D+   V +++++++  +   K +   + L  + E ++++L +  +K F + 
Sbjct: 31  ELKKNLLKADVNHKVVKELIQKVQIRTKEKGIGKDQFLEALRETLNELLEVGGNKGFVF- 89

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
             + P VIL+ G+ G GKTT  GKL+  + + G KV++ A D  R AA++QL+       
Sbjct: 90  APNPPTVILMTGLQGSGKTTTTGKLATYLKNKGKKVLIVAADLQRLAAVEQLRQITSAIE 149

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            +    E   +   +   A K A +K  DV++IDTAGRL  +  LM  + K ++     D
Sbjct: 150 VELYEDEATKNPVEVVKAALKYADSKIFDVVLIDTAGRLAIDDELMDEL-KAVK-----D 203

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  +  V D+ TGQ+A+R    F    G  G+I++K DG A+GG  + +    ++P+
Sbjct: 204 AAKPDEIFYVADSLTGQDAVRTATTFKEKIGIDGVILSKYDGDAKGGVALGLSSQVQVPL 263

Query: 287 YFLGVGEGINDLEPFV 302
            F+G+GE + DLE F+
Sbjct: 264 RFIGMGEKMEDLEVFL 279


>gi|254476642|ref|ZP_05090028.1| signal recognition particle protein [Ruegeria sp. R11]
 gi|214030885|gb|EEB71720.1| signal recognition particle protein [Ruegeria sp. R11]
          Length = 507

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 138/269 (51%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  ++++  +   + V+      Q+V+  V + +   L     P     
Sbjct: 38  LLEADVSLPVARDFIKKVQDQATGQAVTKSVTPGQQVVKIVHDALVDTLRGEGDPGQLKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P  IL+VG+ G GKTT  GKL+K++ +  G KV++A+ D +R AA+DQL +   +  
Sbjct: 98  DSPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKKVLMASLDVYRPAAMDQLAVLGTQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G     +A  A +QA     DV ++DTAGRL  + +LM  +  +  V+    
Sbjct: 158 VDTLPIVPGQKPVDIAKRAKQQAVLGGYDVYMLDTAGRLQIDEVLMQEVEDVRDVV---- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             +P   L V+D  TGQ A+   E F A  G +G+++T+MDG  RGG  + +      P+
Sbjct: 214 --SPRETLLVVDGLTGQVAVEVAEEFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ +E F     +  I G  D
Sbjct: 272 RFVGLGEKMDAIETFEPDRIAGRILGMGD 300


>gi|251797472|ref|YP_003012203.1| signal recognition particle protein [Paenibacillus sp. JDR-2]
 gi|247545098|gb|ACT02117.1| signal recognition particle protein [Paenibacillus sp. JDR-2]
          Length = 462

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 21/289 (7%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS---------VQRVLY 86
           ++   L++ +RE +   L+ +D+   V +  + ++  K    DVS         +  V  
Sbjct: 24  VTEEDLNEAMRE-VRLALLEADVNFKVVKDFIAKVKEKALGLDVSKSFTPGMVVIDIVNK 82

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           +++EL+      L+K      +  P VI++VG+ G GKTT   KL+K +     K +L A
Sbjct: 83  ELTELMGGTQSKLAKA-----NKPPTVIMMVGLQGAGKTTTTAKLAKLLQKGNSKPLLVA 137

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AAI QL++  ++ +A        +    +A      A+    D +I DTAGRLH
Sbjct: 138 CDIYRPAAIKQLQVLGEQINAPVFSLGDQTSPVEIAKAGLAHARENHNDYVIFDTAGRLH 197

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  LM  + ++ + +K      P  VL V+DA TGQ+A+   + FH     TG+++TK+
Sbjct: 198 IDEALMEELKQIHQNVK------PDEVLLVVDAMTGQDAVNVAQSFHEQLELTGVVLTKL 251

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + +      P+ F  +GE I+ LEPF     ++ I G  D
Sbjct: 252 DGDTRGGAALSVKAVTGKPIKFAAMGEKIDALEPFHPDRMASRILGMGD 300


>gi|119899521|ref|YP_934734.1| signal recognition particle protein [Azoarcus sp. BH72]
 gi|119671934|emb|CAL95848.1| signal recognition particle protein [Azoarcus sp. BH72]
          Length = 452

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 115/209 (55%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT  GKL+K + ++   KV++ + D +R AAI+QLK  A +  
Sbjct: 97  TQPPAVILMAGLQGAGKTTTTGKLAKHLKESQKKKVLVVSTDVYRPAAIEQLKAVAAQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            +F  S++      +A  A   A+   VDVL++DTAGRL  +  +MA I  +   +K   
Sbjct: 157 VEFFPSQVDQRPVDIALGAVDFARKHHVDVLLVDTAGRLAIDEAMMAEIQALHAAVK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+     F+     TG+++TK+DG ARGG  + +      P+
Sbjct: 214 ---PIETLFVVDAMLGQDAVNTARAFNDALPLTGVVLTKLDGDARGGAALSVRHVTGKPL 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GVGE ++ LEPF     ++ I G  D
Sbjct: 271 KFAGVGEKLSGLEPFHPDRMASRILGMGD 299


>gi|5822474|pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
           Aquaticus
 gi|5822475|pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
           Aquaticus
 gi|5822476|pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
           Aquaticus
          Length = 425

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 143/309 (46%), Gaps = 28/309 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + V +  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           K V       + +L  V E + + L     +P+ K  N  F        +VG+ G GKTT
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+      G + +L A DT R AA +QL++  ++     +    G    ++     
Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  
Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 288 AGRILGMGD 296


>gi|187918549|ref|YP_001884112.1| signal recognition particle, subunit FFH/SRP54 [Borrelia hermsii
           DAH]
 gi|119861397|gb|AAX17192.1| signal recognition particle, subunit FFH/SRP54 [Borrelia hermsii
           DAH]
          Length = 449

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 146/291 (50%), Gaps = 22/291 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           +I+ + ++D + + ++D LI +D+ + V ++ V  +     A++    +VL DV      
Sbjct: 21  VINEKNIEDAI-DTIKDALIEADVNLRVVRRFVNSV-----AEEAKGIKVLRDVDPKSQF 74

Query: 95  MLMPLSKPFNW----------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           + +   K  N+          +  ++   IL++G+ G GKTT   KL+ ++     KV+L
Sbjct: 75  VKIVNDKLVNFLGDKHSELILNPVNKLSCILMLGLQGSGKTTTCAKLAMRLKSENRKVLL 134

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            A DTFR+AA+DQL++  ++        E  +D   +  ++ + A+ +  D +I+DT GR
Sbjct: 135 VAADTFRAAAVDQLRVLGEQIGISVFAIESENDPIKVVKKSIEYAKVELFDTVIVDTRGR 194

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           L    +L+  I K+       D   P   + V DA TGQ A+   + F+   G TG+I T
Sbjct: 195 LEVEDLLLKEIKKI------KDIVTPTETILVADAMTGQVAVNIAKEFNESVGITGVIFT 248

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           K D  ARGG ++ +      P+ F+GVGE   DL+ F     ++ I G  D
Sbjct: 249 KFDSDARGGAILSLKTICGAPIKFVGVGERPEDLDIFYPDRVASRILGMGD 299


>gi|226945998|ref|YP_002801071.1| signal recognition particle protein [Azotobacter vinelandii DJ]
 gi|226720925|gb|ACO80096.1| signal recognition particle protein [Azotobacter vinelandii DJ]
          Length = 458

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 157/304 (51%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKEFVNRIKERAVG 61

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLS 132
            +VS          +++   L  L    N D +     P V+L+ G+ G GKTT +GKL+
Sbjct: 62  TEVSKSLTPGQAFVKIVRVELETLMGAANEDLALNAAPPAVVLMAGLQGAGKTTTVGKLA 121

Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + + +   K V++ + D +R AAI QL+  A+     F  S+       +A  A ++A+ 
Sbjct: 122 RFLKERRKKSVLVVSADIYRPAAIKQLETLAEEVGVTFFPSDAAQKPVDIAQAAIREARL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +DV+++DTAGRLH ++ +M  I K++    +     P   L V+DA TGQ+A    + 
Sbjct: 182 KFIDVVLLDTAGRLHVDADMMEEI-KLLHAAAK-----PVETLFVVDAMTGQDAANTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG ARGG  + +      P+ F+G+GE  + LEPF     ++ I 
Sbjct: 236 FGDALPLTGVVLTKVDGDARGGAALSVRYITGKPIKFIGMGEKSDALEPFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|313891433|ref|ZP_07825049.1| signal recognition particle protein [Dialister microaerophilus UPII
           345-E]
 gi|313120208|gb|EFR43384.1| signal recognition particle protein [Dialister microaerophilus UPII
           345-E]
          Length = 452

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 142/294 (48%), Gaps = 23/294 (7%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           KL K F     K K   +DI       DG   E+   L+ +D+   VA+  + ++  K  
Sbjct: 9   KLQKAFKDLRGKGKLSESDI-------DGALREVRKALLEADVNFKVAKDFIAQVREKAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V + + ++L           S     I++VG+ G GKTT +GK
Sbjct: 62  GEEVFGSLKPDQTVIKIVRDELTQLLGGTQSKITMS-SKGLTTIMLVGLQGAGKTTTVGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G   +L A D +R AAI QL++ A +        E   +  A+A EA + A+
Sbjct: 121 LALMLKKKGKNPLLVACDVYRPAAIKQLQVLASQVGVSAFTIEGSKEPVAIAKEAVEYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV++IDTAGRL  +++LM  + K I+         PH +L VLD+ TGQ+A+   +
Sbjct: 181 KHNNDVILIDTAGRLTIDTVLMEEL-KNIKA-----AVMPHEILLVLDSMTGQDAVTTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE----GINDLEP 300
            F    G  G ++TKMDG ARGG  + I      P+  +GV E    G+ D  P
Sbjct: 235 AFDESLGIDGTVLTKMDGDARGGAALSIKAVTGKPIKLIGVSEKLDGGLEDFYP 288


>gi|315639588|ref|ZP_07894728.1| signal recognition particle protein [Enterococcus italicus DSM
           15952]
 gi|315484549|gb|EFU75005.1| signal recognition particle protein [Enterococcus italicus DSM
           15952]
          Length = 472

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 116/208 (55%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ ++      + ++ AGD +R AAIDQLK+   +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANRLKKTENARPLMIAGDVYRPAAIDQLKVLGQQL--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              ++G+  +   +  +    A  KK D ++IDTAGRLH +  LM  + K I+ L +   
Sbjct: 159 PVFDMGTTVSPVEIVRQGLAVAAEKKNDYVLIDTAGRLHVDEALMEEL-KQIKELAQ--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA TGQ+A+   + F+   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PNEILLVVDAMTGQDAVTVADSFNQQLGITGVVITKLDGDTRGGAALSIRSVTGAPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE + DLE F     ++ I G  D
Sbjct: 273 FTGTGEKLTDLEIFHPDRMASRILGMGD 300


>gi|325996419|gb|ADZ51824.1| Signal recognition particle, subunit Ffh SRP54 [Helicobacter pylori
           2018]
          Length = 448

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLSGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLRGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFHEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|209360587|gb|ACI42964.1| signal recognition particle protein [Lactobacillus casei]
          Length = 478

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 155/316 (49%), Gaps = 22/316 (6%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E LS   +L K F+    K K   +DI  + R       E+   L+ +D+   V + 
Sbjct: 1   MAFEGLS--ERLQKAFSGLRRKGKVSESDIRDAMR-------EIRLALLEADVNFDVVKT 51

Query: 66  IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++ + TK    +V       Q+++  V++ + K +   + P N    H P VI++ G+ 
Sbjct: 52  FIKNVRTKALGAEVLESLTPSQQIIKIVNDELVKTMGEAAVPLNK-APHIPTVIMMAGLQ 110

Query: 121 GVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           GVGKTT +GKLSK  M +   + +L A D +R AAIDQL+    + +          D  
Sbjct: 111 GVGKTTTVGKLSKYLMDNDSARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDVDPV 170

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +  +    A+  K D ++IDTAGRL  +  LM  + K I+ L       P+ +L V+DA
Sbjct: 171 EIVRQGLATAKENKNDYVLIDTAGRLQIDEKLMNEL-KNIKELAH-----PNDILLVVDA 224

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ A+   + F+     TG+++TK+DG  RGG  + I      P+ F+G GE ++ L+
Sbjct: 225 MTGQAAVDVAKGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALD 284

Query: 300 PFVAKDFSAVITGCLD 315
            F     +  I G  D
Sbjct: 285 VFYPDRMANRILGMGD 300


>gi|188527936|ref|YP_001910623.1| signal recognition particle protein [Helicobacter pylori Shi470]
 gi|188144176|gb|ACD48593.1| signal recognition particle protein [Helicobacter pylori Shi470]
 gi|308062429|gb|ADO04317.1| signal recognition particle protein [Helicobacter pylori Cuz20]
 gi|308063935|gb|ADO05822.1| signal recognition particle protein [Helicobacter pylori Sat464]
          Length = 448

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 154/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRL-DDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  DDG       +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDGKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSASAFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|217974261|ref|YP_002359012.1| signal recognition particle protein [Shewanella baltica OS223]
 gi|229220585|ref|YP_001049596.2| signal recognition particle protein [Shewanella baltica OS155]
 gi|304409370|ref|ZP_07390990.1| signal recognition particle protein [Shewanella baltica OS183]
 gi|307303728|ref|ZP_07583481.1| signal recognition particle protein [Shewanella baltica BA175]
 gi|217499396|gb|ACK47589.1| signal recognition particle protein [Shewanella baltica OS223]
 gi|304351888|gb|EFM16286.1| signal recognition particle protein [Shewanella baltica OS183]
 gi|306912626|gb|EFN43049.1| signal recognition particle protein [Shewanella baltica BA175]
          Length = 457

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL ++ V+E L ++   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + K +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K V++ + D +R AAI QL+  A   + +F  S++      +A  A   A+
Sbjct: 121 GKFLRERHKKSVLVVSADVYRPAAIKQLETLAQEVAVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|224139052|ref|XP_002322968.1| predicted protein [Populus trichocarpa]
 gi|222867598|gb|EEF04729.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 143/290 (49%), Gaps = 19/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86
           II  + L+D +  E+   L++SD+   +        +KIV  + L   + K   +Q+ ++
Sbjct: 22  IIDEKALNDCL-NEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRKIIQQAIF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           +  EL  KML P  KP       +  V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  N--ELC-KMLDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + +  D++I+DT+GR  
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHK 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
               L   + ++    K      P  V+ V+D++ GQ A  Q + F        +I+TKM
Sbjct: 197 QEVALFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKM 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           DG A+GGG +  V   K PV F+G GE +++ E F  K F + + G  D+
Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300


>gi|153808568|ref|ZP_01961236.1| hypothetical protein BACCAC_02864 [Bacteroides caccae ATCC 43185]
 gi|149128890|gb|EDM20107.1| hypothetical protein BACCAC_02864 [Bacteroides caccae ATCC 43185]
          Length = 440

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 140/265 (52%), Gaps = 13/265 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
              +    D   RP VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AAI+
Sbjct: 86  MGGETVEVDIDARPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++ A++      C     +   +A  A ++A+AK  D++I+DTAGRL  +  +M  I 
Sbjct: 146 QLRVLAEQIDVPMYCELESKNPVEIAQHAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIA 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +   +       P+ +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 206 AIKEAIN------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I      P+ F+G GE ++ ++ F
Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQF 284


>gi|319956456|ref|YP_004167719.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Nitratifractor salsuginis DSM 16511]
 gi|319418860|gb|ADV45970.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Nitratifractor salsuginis DSM 16511]
          Length = 451

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 147/274 (53%), Gaps = 18/274 (6%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           EL+  L++SD    V  K+V+EL+   ++  K   + +  + +  L  +++  L+   N 
Sbjct: 31  ELKKALLKSD----VHHKVVKELIVTVEKETKAAGIGKESF-MKALQDELVRILTAKGNQ 85

Query: 106 DF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIW 161
            F   S  P V+L+ G+ G GKTT  GKL+  + +   K V++AA D  R AA++QL+  
Sbjct: 86  GFVFASRPPTVVLMTGLQGSGKTTTTGKLAYMLKEQKKKKVLIAAADLQRLAAVEQLRQI 145

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A++   D V  E  +    +   A K+A+ +  DV++IDTAGRL  +  LM  + + IR 
Sbjct: 146 AEQIGVDLVADE-NATPDEVVKRALKKAEDELYDVVLIDTAGRLAIDEELMEELAR-IR- 202

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
               D   P  +  V DA TG +A+R  + F    G TG+I++K D  ++GG  + I   
Sbjct: 203 ----DLAQPDEIFYVADAMTGMDAVRTAQTFKDKIGITGVILSKFDADSKGGVALGIAHQ 258

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             +P+ F+G GE + DLEPF+ +  ++ + G  D
Sbjct: 259 VGVPLRFIGSGEKMPDLEPFIPERITSRLMGAGD 292


>gi|317182404|dbj|BAJ60188.1| signal recognition particle protein [Helicobacter pylori F57]
          Length = 448

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|294085383|ref|YP_003552143.1| signal recognition particle protein [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664958|gb|ADE40059.1| signal recognition particle protein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 531

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 119/212 (56%), Gaps = 10/212 (4%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           ++ P VIL+ G+ G GKTT  GKL++++ +   K VM+A+ D  R AA +QL++  ++  
Sbjct: 127 TNPPSVILMAGLQGSGKTTTAGKLARRLRERDRKKVMVASLDVTRPAAREQLRLLGEQAE 186

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A  +    G     +A  A + A+ +  DVLI+DTAGR+  +  LMA + + +R      
Sbjct: 187 AGILPELDGESPVQIAKRALQSAKLQAYDVLILDTAGRISVDEALMAEL-RDVRA----- 240

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              PH VL V DA TGQ+A+     F+   G TG+++T++DG ARGG  + +      P+
Sbjct: 241 ATNPHEVLLVADAMTGQDAVTTASAFNDAVGVTGIVLTRLDGDARGGAALSMRQITGCPI 300

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            F+G+GE  + LE F   D + +    LD G+
Sbjct: 301 KFVGIGEKQDALEEF---DPARLAGRILDMGD 329


>gi|59711155|ref|YP_203931.1| Signal recognition particle (SRP) component with 4.5S RNA (ffs)
           [Vibrio fischeri ES114]
 gi|59479256|gb|AAW85043.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Vibrio fischeri ES114]
          Length = 457

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 152/308 (49%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D ++E L ++   L+ +D+ + V +  V+ +  K  A
Sbjct: 2   FDNLTDRLSRTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFVKRV--KEGA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N      P VIL+ G+ G GKTT  G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQAELEAVMGDSNEALNL-ACQPPAVILMAGLQGAGKTTSTG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + +   K V++ + D +R AAI QL+  A     DF  S        +   A   
Sbjct: 119 KLAKLLKERDKKKVLVVSADVYRPAAIKQLETLAADVDVDFFPSSADQKPIDIVDAAISH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALR 247
           A+ K  DV+I+DTAGRL  ++ +M  I       K+L  H  P   L V+DA TGQ+A  
Sbjct: 179 AKLKFFDVVIVDTAGRLAVDTEMMDEI-------KQLHAHVNPIETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+I+TK+DG ARGG  + +      PV FLGVGE  + LEPF  +  +
Sbjct: 232 TAKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPVKFLGVGEKTDALEPFHPERIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|303291107|ref|XP_003064840.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
 gi|226453866|gb|EEH51174.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
          Length = 513

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 6/206 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+V++ VG+ G GKTT   K +      G K  L   DTFR+ A DQLK  A +    F 
Sbjct: 110 PNVVMFVGLQGCGKTTTCTKYAHHYQKKGFKPALVCADTFRAGAFDQLKQNATKARIPFY 169

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S   +D A +A +  ++ +A+K D++I+DT+GR    S L     +M  V + ++P   
Sbjct: 170 GSYTETDPAKIASDGVERFKAEKNDLIIVDTSGRHKQESALFE---EMRAVAEAVNPDM- 225

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              + V+D++ GQ A  Q   F        +++TK+DG A+GGG I  V   + P+ F+G
Sbjct: 226 --TIFVMDSSIGQAASDQAAAFKNTVDVGSVVVTKLDGHAKGGGAISAVAATRAPIVFIG 283

Query: 291 VGEGINDLEPFVAKDFSAVITGCLDY 316
            GE I++ E F AK F + + G  D+
Sbjct: 284 TGEHIDEFEAFDAKPFVSRLLGLGDW 309


>gi|229582222|ref|YP_002840621.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus
           islandicus Y.N.15.51]
 gi|259511387|sp|C3NHT9|SRP54_SULIN RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|228012938|gb|ACP48699.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus
           islandicus Y.N.15.51]
          Length = 447

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 152/315 (48%), Gaps = 30/315 (9%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67
           L  IR   + F + S   ++ + + I          +EL+  LI SD+ V +   +   +
Sbjct: 2   LENIRDAVRKFLTRSTPYEKAVDEFI----------KELQKSLISSDVNVKLVFSLTAKI 51

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGK 124
           +E L K     V ++R  + +S +++  L  L    K  N + +  P +I++VGV G GK
Sbjct: 52  KERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGK 109

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL+      G KV L A D +R AA DQL    ++            +A  +A +
Sbjct: 110 TTTAGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKK 169

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL----DPHAPHSVLQVLDAT 240
                   K+D++I+DTAGR         G G+  ++L+ +    +   P  V+ V+DA+
Sbjct: 170 GVDTFVKNKMDIIIVDTAGR--------HGYGEETKLLEEMKEIYEALKPDDVILVIDAS 221

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ A      FH  +    +I+TKMDGTA+GGG +  V      + F+G GE I++LE 
Sbjct: 222 IGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEI 281

Query: 301 FVAKDFSAVITGCLD 315
           F AK + + I G  D
Sbjct: 282 FNAKRYVSRILGMGD 296


>gi|269793026|ref|YP_003317930.1| signal recognition particle protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100661|gb|ACZ19648.1| signal recognition particle protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 447

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 134/269 (49%), Gaps = 14/269 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  VE +  +   ++V       Q+V   V E +  ++    KP +   
Sbjct: 38  LLEADVNYKVVKDFVERVRQRATGQEVLSSITPAQQVYAIVFEELLDLMGREVKPLSIS- 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
              P V ++VG+ G GKTT   K++ KM  +  + ML A D  R AA++QL++ A     
Sbjct: 97  PKPPTVYMMVGLQGSGKTTTAAKIALKMKRSH-RPMLVACDLRRPAAVEQLRVLASTVGV 155

Query: 168 DFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            FV  E G +D   +A  A ++     VD++I+DTAGR   +  LM  +  +   +    
Sbjct: 156 PFVGPEEGETDPIRVARRALERCSETLVDLVIVDTAGRFQIDQELMQEVQDLKGAVN--- 212

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              PH VL V+D+ TGQ A+     F+   G TG+++TK+DG ARGG  + I      PV
Sbjct: 213 ---PHEVLLVVDSMTGQEAVSVASAFNDRLGLTGVVLTKLDGDARGGAALAIRAVTGTPV 269

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              G+GE ++DLE F     +  I G  D
Sbjct: 270 RLAGLGEKVDDLEVFDPNKMAQRILGMGD 298


>gi|227830212|ref|YP_002831992.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Sulfolobus islandicus L.S.2.15]
 gi|259511385|sp|C3MPN4|SRP54_SULIL RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|227456660|gb|ACP35347.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Sulfolobus islandicus L.S.2.15]
          Length = 447

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 152/315 (48%), Gaps = 30/315 (9%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67
           L  IR   + F + S   ++ + + I          +EL+  LI SD+ V +   +   +
Sbjct: 2   LENIRDAVRKFLTGSTPYEKAVDEFI----------KELQKSLISSDVNVKLVFSLTAKI 51

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGK 124
           +E L K     V ++R  + +S +++  L  L    K  N + +  P +I++VGV G GK
Sbjct: 52  KERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGDKEPNVNPTRLPFIIMLVGVQGSGK 109

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL+      G KV L A D +R AA DQL    ++            +A  +A +
Sbjct: 110 TTTAGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKK 169

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL----DPHAPHSVLQVLDAT 240
                   K+D++I+DTAGR         G G+  ++L+ +    +   P  V+ V+DA+
Sbjct: 170 GVDTFVKNKMDIIIVDTAGR--------HGYGEETKLLEEMKEIYEALKPDDVILVIDAS 221

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ A      FH  +    +I+TKMDGTA+GGG +  V      + F+G GE I++LE 
Sbjct: 222 IGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEI 281

Query: 301 FVAKDFSAVITGCLD 315
           F AK + + I G  D
Sbjct: 282 FNAKRYVSRILGMGD 296


>gi|154338231|ref|XP_001565340.1| signal recognition particle [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134062389|emb|CAM42250.1| putative signal recognition particle [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 566

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 142/284 (50%), Gaps = 15/284 (5%)

Query: 42  DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLTKRYAKDVSVQRVLYD-VSELIH 93
           +D V+E   E+   L+++D+ VA+ +K    I  EL        ++ +++L + V + + 
Sbjct: 69  EDDVKELMNEIARALLQADVNVAIVKKLQVSIKTELALAEEGVGLNKRKILQNAVFKGLQ 128

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           ++L P  KPF      + +V+L VG+ G GKTT   K +      G K  L   DTFR+ 
Sbjct: 129 RILDPGVKPF-MPVKGKQNVVLFVGLQGSGKTTSCTKYAAYFQRKGFKTALVCADTFRAG 187

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQL+  A +    F  S   +D  A+A E   + + +K D++I+DT+GR    + L  
Sbjct: 188 AYDQLRQNATKAKVRFYGSLTEADPVAIAREGVAELKKEKYDLIIVDTSGRHKQEAALFE 247

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++   +K      P+ ++ V+ AT GQ    Q   F A+     +I+TK+D   +GG
Sbjct: 248 EMKQVEEAVK------PNDIVFVMSATDGQAVEAQASHFKAMVPVGSVIVTKLDCQTKGG 301

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           G +  V   + P+ F+G GE  +D + F  + F   + G  D G
Sbjct: 302 GALSAVAATRSPIVFIGTGEHFDDFDLFRPERFVQKMLGMGDIG 345


>gi|153854837|ref|ZP_01996060.1| hypothetical protein DORLON_02065 [Dorea longicatena DSM 13814]
 gi|149752539|gb|EDM62470.1| hypothetical protein DORLON_02065 [Dorea longicatena DSM 13814]
          Length = 449

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 152/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++ S  RL +D V+E L+++   L+ +D+   V +  ++ +  +   
Sbjct: 3   FDSLTEKLQNVFKNLRSKGRLTEDDVKEALKEIKRALLAADVNFKVVKDFIKSVQERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E +  ++   +            VI++ G+ G GKTT   KL
Sbjct: 63  QDVMNGLNPGQMVIKIVNEELINLMGSETTEIKLQPGKAITVIMMAGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G K +L A D +R AAI QL++  ++   +          A +A  A + AQ 
Sbjct: 123 AGKFKLKGKKPLLVACDVYRPAAIKQLQVNGEKQGVEVFSMGENHKPANIAKAAIEHAQK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRLH +  +MA       + +  +    H  + V+DA TGQ+A+   + 
Sbjct: 183 NGNDLVILDTAGRLHIDEDMMA------ELEEIKEEVEVHQTILVIDAMTGQDAVNVAKE 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + +      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FNEKVGIDGVIVTKLDGDTRGGAALSVKAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|145588389|ref|YP_001154986.1| signal recognition particle protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046795|gb|ABP33422.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 460

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 155/306 (50%), Gaps = 26/306 (8%)

Query: 30  EGITDIIS---------SRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77
           E +TD +S         +R  +D   E L ++   L+ +D+ + V + ++E++  K   +
Sbjct: 3   ENLTDRLSRVVKTMRGQARLTEDNTAEMLREIRLALLEADVALPVVKSLLEQIKFKALGE 62

Query: 78  DV----SVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130
           +V    S  + L  V   EL   M+   ++    + + +P  VIL+ G+ G GKTT +GK
Sbjct: 63  EVVGSLSPGQALVGVVQRELAQVMMGDTNQSGELNLATQPPAVILMAGLQGAGKTTSVGK 122

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K + +   K V+  + D +R AAI+QL+    +  A+F  S +      +A  A   A
Sbjct: 123 LAKWLQEKKKKKVLTVSCDVYRPAAIEQLETVTKQVGAEFFPSNVNQKPNDIATAALDWA 182

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DV+I+DTAGRL  +  LM  I  +   L       P   L V+DA  GQ+A+   
Sbjct: 183 RRHYFDVVIVDTAGRLGIDEALMQEIKTLHASLN------PIETLFVVDAMLGQDAVNTA 236

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH     TG+I+TK+DG +RGG  + +     +P+ F+GV E ++ LE F A+  +  
Sbjct: 237 KAFHEALPLTGVILTKLDGDSRGGAALSVRQVTGVPLKFIGVAEKMDGLEAFDAERMANR 296

Query: 310 ITGCLD 315
           I G  D
Sbjct: 297 ILGMGD 302


>gi|71066262|ref|YP_264989.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Psychrobacter arcticus 273-4]
 gi|71039247|gb|AAZ19555.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Psychrobacter arcticus 273-4]
          Length = 511

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 158/309 (51%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I  + +L +D +++ L ++   L+ +D+ + V +  V     KR  
Sbjct: 2   FDTLTERLSSSLRNIAGTGQLTEDNIKDTLREVRMALLEADVALPVTRDFV-----KRVK 56

Query: 77  KDVSVQRVLYDVS------ELIHKMLMPLSKPFNW--DFSHRPHVI-LVVGVNGVGKTTV 127
           +      VL +++      +++H  L  +    N   + + +P V+ L+ G+ G GKTT 
Sbjct: 57  EQALGAEVLKELAPGQAFVKIVHDELTEMMGSANQQLEMTGKPPVVYLLAGLQGAGKTTT 116

Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GKL+K + +    KVML + D +R AAI QL+  A + +A FV S    +   +A  A 
Sbjct: 117 AGKLAKFLQERHKKKVMLVSADVYRPAAIAQLEQVAGQVNAKFVNSSSDENPIDIALRAI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D+LIIDTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A 
Sbjct: 177 EEAKIQYQDILIIDTAGRLAIDETMMDEIKALTAAVN------PSETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+I+TK DG ARGG  + +      P+ FLG GE ++ LE F  +  
Sbjct: 231 NTAKAFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLDALELFHPERI 290

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 291 AQRILGMGD 299


>gi|146308421|ref|YP_001188886.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pseudomonas
           mendocina ymp]
 gi|145576622|gb|ABP86154.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pseudomonas
           mendocina ymp]
          Length = 458

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 155/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++    +L +D +++ L ++   L+ +D+ + V +  V ++  +   
Sbjct: 2   FENLTDRLSQTLRNVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVGKVKERAVG 61

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLS 132
            +VS          +++   L  L    N D S     P V+L+ G+ G GKTT  GKL+
Sbjct: 62  TEVSKSLTPGQAFVKIVRAELEELMGAANEDLSLNAAPPAVVLMAGLQGAGKTTTAGKLA 121

Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +   K V+L + D +R AAI QL+  A      F  S+       +A  A ++A+ 
Sbjct: 122 KFLKERKKKSVLLVSADVYRPAAIKQLETLAGDLGVTFFPSDASQKPVDIANAAIREAKL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +DV+I+DTAGRL  ++ +MA I  +   +K      P   L V+DA TGQ+A    + 
Sbjct: 182 KFIDVVILDTAGRLAVDAEMMAEIQALHAAVK------PVETLFVVDAMTGQDAANTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG ARGG  + +      P+ F+G+GE  + LEPF     ++ I 
Sbjct: 236 FSDALPLTGVVLTKVDGDARGGAALSVRHITGKPIKFIGMGEKSDALEPFHPDRIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|323456635|gb|EGB12501.1| putative GTP binding signal recognition particle protein SRP54
           [Aureococcus anophagefferens]
          Length = 530

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 112/209 (53%), Gaps = 10/209 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+L+ G+ G GKTT   KL+ ++  + G   ML A D +R AA++QL+I  ++     
Sbjct: 150 PTVVLLCGLQGAGKTTAAAKLALRLKEEEGKTPMLVAADVYRPAAVEQLQILGEQVGVPV 209

Query: 170 VCS--EIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                E G+ DA A+A    + A+ +  DV+I+DTAGR      LMA + + +R   +  
Sbjct: 210 YAEAFEAGAGDAVAIATAGVRAAKERGADVVIVDTAGRQVIEESLMAEL-RSVRAATK-- 266

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L VLDA TGQ+A    + F      TG ++TK+DG ARGG  + +      P+
Sbjct: 267 ---PDETLLVLDAMTGQDAASLAKRFDDACPLTGSVLTKLDGDARGGAALSVRAVSGKPI 323

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+GVGE + DLEPF     ++ I G  D
Sbjct: 324 KFVGVGEKVGDLEPFFPARMASRILGMGD 352


>gi|309792455|ref|ZP_07686919.1| signal recognition particle protein [Oscillochloris trichoides DG6]
 gi|308225443|gb|EFO79207.1| signal recognition particle protein [Oscillochloris trichoides DG6]
          Length = 460

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 153/308 (49%), Gaps = 22/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F S S +L+     + S  +L +D VRE ++ +   L+ +D+   V +    K+ E+ + 
Sbjct: 2   FESLSDRLQTVFQKLGSKGKLTEDDVREAMKQVRLALLEADVNFKVVKDFVAKVTEQAIG 61

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIG 129
           +   K ++  +    V +++H+ L+ L    N         P VI++VG+ G GKTT+  
Sbjct: 62  EEVTKSLTPHQ---QVVKIVHQELINLLGTDNVPLQESRPGPTVIMLVGLQGTGKTTLSA 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+  +   G +V+LAA D +R AAI QL+    +                +A  A + A
Sbjct: 119 KLALHLRKKGRRVLLAACDIYRPAAITQLESLGKQLGITVYSEPNSKHPPEIATRAVELA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  +V+I+DTAGRL  +  LM  +  +   ++      P   L V+DA TGQ A+R  
Sbjct: 179 KKELYNVVIVDTAGRLQIDEPLMKELEDIDACVQ------PIERLLVVDAMTGQEAVRVA 232

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI--NDLEPFVAKDFS 307
           E F+     TGL+MTKMDG ARGG  + +     +P+ F+  GE I  N LE F     +
Sbjct: 233 ETFNQRVKVTGLVMTKMDGDARGGAALSVRSVTGVPIKFISSGEKIDLNTLEAFHPDRLA 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|291615196|ref|YP_003525353.1| signal recognition particle protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291585308|gb|ADE12966.1| signal recognition particle protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 450

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/206 (38%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+K + +   K V+L + D +R AAI+QL++ A +   DF
Sbjct: 100 PAVILMAGLQGAGKTTSSGKLAKLLREQNKKKVLLVSCDVYRPAAIEQLRMLAQQLDVDF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+       +A  A   A+    DVLI+DTAGRL  +  +MA I  +   LK      
Sbjct: 160 FPSDASQKPQDIALAAHDFAKKHHHDVLIVDTAGRLAVDEAMMAEIKDLHAALK------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA TGQ+A+   + F      TG+I+TK+DG ARGG  + +      P+ F+
Sbjct: 214 PIETLFVVDAMTGQDAVNTAKAFGDALPLTGVILTKLDGDARGGAALSVRQVTGKPIKFV 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E  N LE F  +  +  I G  D
Sbjct: 274 GVSEKPNGLEAFHPERMAQRILGMGD 299


>gi|163796732|ref|ZP_02190690.1| signal recognition particle protein [alpha proteobacterium BAL199]
 gi|159177986|gb|EDP62533.1| signal recognition particle protein [alpha proteobacterium BAL199]
          Length = 495

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 146/274 (53%), Gaps = 13/274 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V +  V+ +  +   ++V  SV   Q V+  V + +  ML   S+ 
Sbjct: 33  EVRVALLEADVALPVVKTFVDRVRERAIGREVLRSVTPGQMVVKIVHDELVDMLGSDSQA 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIW 161
            N +    P  IL+VG+ G GKTT   K++K++ +   K V++A+ D  R AA +QL+I 
Sbjct: 93  INLNAPA-PVPILMVGLQGGGKTTTTAKIAKRLRERDRKKVLMASLDVTRPAAREQLRIL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            ++     +    G   AA+A  A    + +  DV+I+DTAGR   +  LMA + + +R 
Sbjct: 152 GEQVGVATLPIINGETPAAIAKRAMTAGRLQGYDVVILDTAGRTSIDEGLMAEV-RAVR- 209

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
               D   PH VL V DA TGQ+A+     FH   G TG+++T++DG +RGG  + +   
Sbjct: 210 ----DAVNPHEVLLVADALTGQDAVTTATNFHERVGITGIVLTRVDGDSRGGAALSMRGV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             +P+  LGVGE ++D+E F  +  +  I G  D
Sbjct: 266 TGMPIKMLGVGEKVDDIEDFHPERLAGRILGMGD 299


>gi|157881430|pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
 gi|157881431|pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
          Length = 297

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 143/309 (46%), Gaps = 28/309 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + V +  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           K V       + +L  V E + + L     +P+ K  N  F        +VG+ G GKTT
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+      G + +L A DT R AA +QL++  ++     +    G    ++     
Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  
Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 288 AGRILGMGD 296


>gi|328772629|gb|EGF82667.1| hypothetical protein BATDEDRAFT_86146 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 565

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 136/277 (49%), Gaps = 26/277 (9%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSELIHK 94
           + + +E+   L+ SD+ V + Q + + +        L+    K   +Q+ ++D  EL  K
Sbjct: 29  EAILKEICGALLESDVNVRLVQSLRKNIKSIVNLQELSSGINKKRIIQKAIFD--ELC-K 85

Query: 95  MLMPLS-----KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           ++ P       KP       +P+VI+ VG+ G GKTT   K++      G +  L   DT
Sbjct: 86  LVDPGQGVVAFKPRKG----KPNVIMFVGLQGSGKTTTCTKMAYYYQRKGYRTCLVCTDT 141

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQLK  A +    +  S   SD   LA E   + + +  +V+I+DT+GR    +
Sbjct: 142 FRAGAFDQLKQNATKAKIPYYGSYTESDPVQLAMEGVDKFKVEGFEVIIVDTSGRHRQET 201

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L   + ++  V+K      P +V+ VLD T GQ A      F        +++TKMDG 
Sbjct: 202 ELFQEMQQISNVIK------PDNVVFVLDGTIGQAADAHARAFQETVDIGSIVITKMDGH 255

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A+GGG I  V     P+ F+G GE I+DLE F ++ F
Sbjct: 256 AKGGGAISAVAATGSPILFIGTGEHIHDLEIFKSQSF 292


>gi|238790728|ref|ZP_04634489.1| Signal recognition particle protein [Yersinia frederiksenii ATCC
           33641]
 gi|238721169|gb|EEQ12848.1| Signal recognition particle protein [Yersinia frederiksenii ATCC
           33641]
          Length = 453

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +   K V++ + D +R AAI QL+  A    
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQGVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++   +K   
Sbjct: 157 IDFFPSDVQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I      P+
Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLGVGE    LEPF     ++ I G  D
Sbjct: 271 KFLGVGEKSEALEPFHPDRVASRILGMGD 299


>gi|294789764|ref|ZP_06754994.1| signal recognition particle protein [Simonsiella muelleri ATCC
           29453]
 gi|294482270|gb|EFG29967.1| signal recognition particle protein [Simonsiella muelleri ATCC
           29453]
          Length = 454

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 145/291 (49%), Gaps = 21/291 (7%)

Query: 37  SSRRLDDGVREELEDL---LIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVS 89
            S+  +D ++E L ++   L+ +D+ + + +  V    E  L    A +++  +  + + 
Sbjct: 19  QSKLTEDNIKEALREVRLALLEADVALPIVKDFVNSVKERALGHEIADNLTPDQAFFGI- 77

Query: 90  ELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM--L 144
             +++ L+ L    N      +  P  IL+ G+ G GKTT +GKL+K + D   K    +
Sbjct: 78  --VNQALIDLMGKENTSLNLSTTPPATILMAGLQGAGKTTTVGKLAKLIKDQDKKKKILV 135

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            + D +R AAI+QLK+ A++   DF  S        +  +A   A+    DVL++DTAGR
Sbjct: 136 VSADVYRPAAIEQLKLLAEQVGVDFFPSNTTQQPVQIVRDAQNYAKKHFYDVLMVDTAGR 195

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           L  +      I  MI +        P   L V+DA  GQ+A+   + F+     TG+++T
Sbjct: 196 LAID------IEMMIEIRAIHSAINPIETLFVIDAMLGQDAVNTAQAFNETLPLTGVVLT 249

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           KMDG ARGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 250 KMDGDARGGAALSVRQITGKPIKFIGVGEKINGLEPFYPDRIASRILGMGD 300


>gi|18402407|ref|NP_564535.1| signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)
           [Arabidopsis thaliana]
 gi|21542461|sp|P49967|SR543_ARATH RecName: Full=Signal recognition particle 54 kDa protein 3;
           Short=SRP54
 gi|17386102|gb|AAL38597.1|AF446864_1 At1g48900/F27K7_8 [Arabidopsis thaliana]
 gi|15450461|gb|AAK96524.1| At1g48900/F27K7_8 [Arabidopsis thaliana]
 gi|15810010|gb|AAL06932.1| At1g48900/F27K7_8 [Arabidopsis thaliana]
 gi|332194242|gb|AEE32363.1| signal recognition particle subunit SRP54 [Arabidopsis thaliana]
          Length = 495

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 141/290 (48%), Gaps = 19/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86
           II  + L++ + E +   L++SD+   + +       KIV  E L   + K   +++ ++
Sbjct: 22  IIDEKALNECLNE-ITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             SEL  KML P  KP       +  V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  --SELC-KMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ A DQLK  A +    F  S   SD   +A E     + +  D++I+DT+GR  
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHK 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
             + L   + ++    K      P  V+ V+D++ GQ A  Q + F        +I+TKM
Sbjct: 197 QEASLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKM 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           DG A+GGG +  V   K PV F+G GE +++ E F  K F + + G  D+
Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300


>gi|308068626|ref|YP_003870231.1| signal recognition particle protein [Paenibacillus polymyxa E681]
 gi|305857905|gb|ADM69693.1| Signal recognition particle protein [Paenibacillus polymyxa E681]
          Length = 458

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 137/267 (51%), Gaps = 10/267 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L+ +D+   V +  + ++  K   K+V    +   V+ D+       LM  S+      +
Sbjct: 39  LLEADVNFKVVKDFIAKVKEKSVGKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKAN 98

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P VI++VG+ G GKTT  GKL+K +     + +L AGD +R AAI QL++  ++ +  
Sbjct: 99  KPPTVIMMVGLQGAGKTTTSGKLAKLLQKQNHRPLLVAGDIYRPAAIKQLQVLGEQINTP 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                  +    +A +  + A+    D +IIDTAGRLH +  LM  + ++   +K     
Sbjct: 159 VFTLGDQTSPVEIAKQGLQHAKDNGNDYVIIDTAGRLHVDEELMEELRQIHTNVK----- 213

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  VL V+D+ TGQ+A+   E F++    TG+++TK+DG  RGG  + +      P+ F
Sbjct: 214 -PDEVLLVVDSMTGQDAVNVAEHFNSSLELTGVVLTKLDGDTRGGAALSVKAVTGCPIKF 272

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
             +GE ++ +EPF  +  ++ I G  D
Sbjct: 273 ATLGEKLDAMEPFHPERMASRILGMGD 299


>gi|229579027|ref|YP_002837425.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Sulfolobus islandicus Y.G.57.14]
 gi|284997634|ref|YP_003419401.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Sulfolobus islandicus L.D.8.5]
 gi|259511388|sp|C3NDW4|SRP54_SULIY RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|228009741|gb|ACP45503.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Sulfolobus islandicus Y.G.57.14]
 gi|284445529|gb|ADB87031.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Sulfolobus islandicus L.D.8.5]
          Length = 447

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 152/315 (48%), Gaps = 30/315 (9%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---V 67
           L  IR   + F + S   ++ + + I          +EL+  LI SD+ V +   +   +
Sbjct: 2   LENIRDAVRKFLTGSTPYEKAVDEFI----------KELQKSLISSDVNVKLVFSLTAKI 51

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNGVGK 124
           +E L K     V ++R  + +S +++  L  L    K  N + +  P +I++VGV G GK
Sbjct: 52  KERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGK 109

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL+      G KV L A D +R AA DQL    ++            +A  +A +
Sbjct: 110 TTTAGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKK 169

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL----DPHAPHSVLQVLDAT 240
                   K+D++I+DTAGR         G G+  ++L+ +    +   P  V+ V+DA+
Sbjct: 170 GVDTFVKNKMDIIIVDTAGR--------HGYGEETKLLEEMKEIYEALKPDDVILVIDAS 221

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ A      FH  +    +I+TKMDGTA+GGG +  V      + F+G GE I++LE 
Sbjct: 222 IGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEI 281

Query: 301 FVAKDFSAVITGCLD 315
           F AK + + I G  D
Sbjct: 282 FNAKRYVSRILGMGD 296


>gi|220931573|ref|YP_002508481.1| signal recognition particle protein [Halothermothrix orenii H 168]
 gi|219992883|gb|ACL69486.1| signal recognition particle protein [Halothermothrix orenii H 168]
          Length = 444

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 114/209 (54%), Gaps = 8/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P +I++VG+ G GKTT   KL++ +   G K +L AGD +R AAI QL++  DR   
Sbjct: 98  SKPPTIIMLVGLQGAGKTTSAAKLARFLKKKGKKPLLVAGDIYRPAAIKQLQVLGDRLDI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                   +    ++     +A++   DV+IIDTAGRLH +        +M+  LK +  
Sbjct: 158 PVFSMGDKNSPVDISKAGISKAESNGNDVVIIDTAGRLHIDE-------EMMDELKSIKS 210

Query: 228 HA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           +  PH +L V+DA TGQ+A+   E F    G  G+I+TK+DG ARGG  + I      P+
Sbjct: 211 NVRPHEILLVVDAMTGQDAVNVAENFSESLGIDGIILTKLDGDARGGAALSIKAVTGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F     S+ I G  D
Sbjct: 271 KFVGMGEKLDALESFHPDRMSSRILGMGD 299


>gi|257452589|ref|ZP_05617888.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp.
           3_1_5R]
 gi|317059129|ref|ZP_07923614.1| signal recognition particle protein [Fusobacterium sp. 3_1_5R]
 gi|313684805|gb|EFS21640.1| signal recognition particle protein [Fusobacterium sp. 3_1_5R]
          Length = 449

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+++ G+ G GKTT  GKL+K +     KV+L A D +R AAI QL++   +      
Sbjct: 100 PTVLMLSGLQGAGKTTFAGKLAKFLKKQNEKVLLVAADVYRPAAIKQLQVLGQQVDVAVY 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E   D   +   A ++A+ +    +IIDTAGRLH +  LM    + +R +KRL    P
Sbjct: 160 AEEGHQDVLGICERALEKAKEEHATYMIIDTAGRLHIDEALM----EELRNIKRL--TRP 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+D+  GQ+A+   + F+      G+++TK+DG  RGG  + I      P+ F+G
Sbjct: 214 QEILLVVDSMIGQDAVNLAKSFNESLSIDGVVLTKLDGDTRGGAALSIKSVVGKPIKFIG 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           VGE ++D+E F      + I G  D
Sbjct: 274 VGEKLDDIELFHPDRLVSRILGMGD 298


>gi|99082443|ref|YP_614597.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ruegeria sp.
           TM1040]
 gi|99038723|gb|ABF65335.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ruegeria sp.
           TM1040]
          Length = 514

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 138/269 (51%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVA----QKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA    +K+ E+   +   K V+  Q+V+  V + + + L     P     
Sbjct: 38  LLEADVSLPVARDFVKKVQEQATGQAVTKSVTPGQQVVKIVHDALVETLRGDEDPGALKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT  GKL+K++ +  G KV+LA+ D +R AA+DQL +   +  
Sbjct: 98  DNPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKKVLLASLDVYRPAAMDQLAVLGTQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G     +A  A +QA     DV ++DTAGRL  +  LM  +  +  V+    
Sbjct: 158 VDTLPIVKGQSPVDIAKRAKQQAALGGYDVYMLDTAGRLQIDETLMKEVEDVRDVV---- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             +P   L V+D  TGQ A+   E F    G +G+++T+MDG  RGG  + +      P+
Sbjct: 214 --SPRETLLVVDGLTGQVAVEVAEEFDNKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ +E F     +  I G  D
Sbjct: 272 RFVGLGEKMDAIETFEPDRIAGRILGMGD 300


>gi|257466448|ref|ZP_05630759.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917604|ref|ZP_07913844.1| signal recognition particle protein [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691479|gb|EFS28314.1| signal recognition particle protein [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 449

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+++ G+ G GKTT  GKL+K +     KV+L A D +R AAI QL++   +      
Sbjct: 100 PTVLMLSGLQGAGKTTFAGKLAKFLKKQNEKVLLVAADVYRPAAIKQLQVLGQQVDVAVY 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E   D   +   A ++A+ +    +IIDTAGRLH +  LM    + +R +KRL    P
Sbjct: 160 AEEGHQDVLGICERALEKAKEEHATYMIIDTAGRLHIDEALM----EELRNIKRL--TRP 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+D+  GQ+A+   + F+      G+++TK+DG  RGG  + I      P+ F+G
Sbjct: 214 QEILLVVDSMIGQDAVNLAKSFNESLSIDGVVLTKLDGDTRGGAALSIKSVVGKPIKFIG 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           VGE ++D+E F      + I G  D
Sbjct: 274 VGEKLDDIELFHPDRLVSRILGMGD 298


>gi|15645766|ref|NP_207943.1| signal recognition particle protein (ffh) [Helicobacter pylori
           26695]
 gi|2500881|sp|P56005|SRP54_HELPY RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|2314305|gb|AAD08194.1| signal recognition particle protein (ffh) [Helicobacter pylori
           26695]
          Length = 448

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIASNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|312079906|ref|XP_003142374.1| signal recognition particle protein [Loa loa]
 gi|307762464|gb|EFO21698.1| signal recognition particle protein [Loa loa]
          Length = 530

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 120/235 (51%), Gaps = 10/235 (4%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           +QR ++  +EL+ K++ P  KPF      +P++ + VG+ G GKTT   KL+      G 
Sbjct: 104 IQRCVF--TELM-KLVDPGVKPFQPT-KGKPNIFMFVGLQGSGKTTTCSKLAYYYQKKGW 159

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K  L   DTFR+ A DQLK  A +    F  S I  D   +A     + +    +++++D
Sbjct: 160 KTCLICADTFRAGAFDQLKQNATKARIPFYGSYIEMDPVTIAASGVDKFKEDGFEIIVVD 219

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           T+GR    + L     +M++V   ++P+   +++ V+DA+ GQ    Q   F        
Sbjct: 220 TSGRHKQEASLFE---EMLQVSNAVNPN---NIVFVMDASIGQACEAQARAFSETVDVGS 273

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+D  A+GGG +  V     PV F+G GE I+D EPF  K F   + G  D
Sbjct: 274 VIITKLDSHAKGGGALSAVAATHSPVIFIGTGEHIDDFEPFEVKPFVQKLLGMGD 328


>gi|30580515|sp|Q8MZJ6|SRP54_GEOCY RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|20750404|gb|AAM23234.1| signal recognition particle 54 kD protein [Geodia cydonium]
          Length = 499

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 106/204 (51%), Gaps = 6/204 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F  
Sbjct: 101 NVIMFVGLQGSGKTTTCTKLAYHYQKKGWKTCLVCADTFRAGAFDQLKQNATKARVPFYG 160

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S    D   +A E  ++ +    +V+I+DT+GR      L     +M++V + +DP    
Sbjct: 161 SYTEMDPVVIAQEGVEKFKEDSFEVIIVDTSGRHKQEESLFE---EMLQVSQAIDPD--- 214

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
           +++ V+D T GQ    Q   F        +I+TK+DG A+GGG +  V   + P+ F+G 
Sbjct: 215 NIIFVMDGTIGQACESQARAFKEKVDVASVIVTKLDGHAKGGGALSAVAATRSPIIFIGT 274

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE I+++EPF  K F + + G  D
Sbjct: 275 GEHIDEMEPFKTKPFVSKLLGMGD 298


>gi|227202754|dbj|BAH56850.1| AT1G48900 [Arabidopsis thaliana]
          Length = 450

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 141/290 (48%), Gaps = 19/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86
           II  + L++ + E +   L++SD+   + +       KIV  E L   + K   +++ ++
Sbjct: 22  IIDEKALNECLNE-ITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             SEL  KML P  KP       +  V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  --SELC-KMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ A DQLK  A +    F  S   SD   +A E     + +  D++I+DT+GR  
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHK 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
             + L   + ++    K      P  V+ V+D++ GQ A  Q + F        +I+TKM
Sbjct: 197 QEASLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKM 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           DG A+GGG +  V   K PV F+G GE +++ E F  K F + + G  D+
Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300


>gi|332160294|ref|YP_004296871.1| signal recognition particle protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604475|emb|CBY25973.1| signal recognition particle, subunit Ffh SRP54 [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664524|gb|ADZ41168.1| signal recognition particle protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862670|emb|CBX72818.1| signal recognition particle protein [Yersinia enterocolitica
           W22703]
          Length = 453

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +   K V++ + D +R AAI QL+  A    
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQAVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++        
Sbjct: 157 VDFFPSDVQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQV-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 268 KPIKFLGVGEKSDALEPFHPDRVASRILGMGD 299


>gi|315656361|ref|ZP_07909250.1| signal recognition particle protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492920|gb|EFU82522.1| signal recognition particle protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 557

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 150/312 (48%), Gaps = 25/312 (8%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT+ F +   K K   +D+       D    ++   LI +D+ + V +     +  K Y
Sbjct: 8   RLTESFKNLRKKGKLKDSDV-------DATVSDIRRALIEADVALEVVKDFTATVKEKAY 60

Query: 76  AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129
               S      Q+++  V++ +  +L    +  ++    + P V ++ G+ G GKTT+ G
Sbjct: 61  GAARSEALNPAQQIVKIVNDELINILGGEDRELHFSKPGKGPTVFMLAGLQGAGKTTLAG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAF 186
           KL K ++    KV+L A D  R  A++QL+I  ++        E G+   D   +A  A 
Sbjct: 121 KLGKWLAKENRKVLLVAADLQRPNAVNQLQIVGEQAGVTVFAPEPGNGVGDPVDVARRAL 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A     DV+I+DTAGRL  +  LMA   + IR     D   P  VL VLDA  GQ+A+
Sbjct: 181 ALASGSGYDVMIVDTAGRLGVDEELMA-QARSIR-----DEVQPDEVLFVLDAMIGQDAV 234

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           R    F      TG ++TK+DG ARGG  + +     +PV F   GEG++D E F A   
Sbjct: 235 RTARAFQEGVDFTGAVLTKLDGDARGGAALSVRGVTGVPVLFASTGEGLDDFERFHADRM 294

Query: 307 SAVITGCLDYGE 318
           ++ I   LD G+
Sbjct: 295 ASRI---LDMGD 303


>gi|110635669|ref|YP_675877.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mesorhizobium sp. BNC1]
 gi|110286653|gb|ABG64712.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Chelativorans sp. BNC1]
          Length = 522

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 114/206 (55%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GK++K+MS+  G KV++A+ DT R AA +QL+   ++T    
Sbjct: 100 PVVVMMVGLQGSGKTTTSGKIAKRMSERQGKKVLMASLDTRRPAAQEQLRQLGEQTGIAT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LMA +  + R         
Sbjct: 160 LPIVAGQTPVDIARRAVQAAKLGGHDVVILDTAGRTHIDEPLMAEMSDIRRA------SN 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+   + F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADSLTGQDAVNLAKNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE ++ LE F  +  +  I G  D
Sbjct: 274 GTGEKMDALEEFHPRRIADRILGMGD 299


>gi|260583609|ref|ZP_05851357.1| signal recognition particle protein [Granulicatella elegans ATCC
           700633]
 gi|260158235|gb|EEW93303.1| signal recognition particle protein [Granulicatella elegans ATCC
           700633]
          Length = 478

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 140/271 (51%), Gaps = 17/271 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  V ++  +    +V       Q+V+  V+E + +++     PF +  
Sbjct: 39  LLEADVNFKVVKDFVRKVNERALGSNVLEALSPAQQVVKIVNEELTELMGGEQSPFQFS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P V++++G+ G GKTT  GKL+  ++     + +L A D +R AAIDQL+    +  
Sbjct: 98  PKPPTVVMMIGLQGAGKTTTAGKLASFLAKHENKRPLLVAADVYRPAAIDQLQTLGKQL- 156

Query: 167 ADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            ++    +G+D     +A +A ++A  +  D++IIDTAGRLH +  LM  +  +  V   
Sbjct: 157 -NYPVFSLGTDVNPVEIARQAIERATIEGRDLVIIDTAGRLHIDEALMEELQNIKAVAN- 214

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P+ +L V+D  TGQ+A+   E F+     TG+I+TK+DG  RGG  + I      
Sbjct: 215 -----PNEILLVVDVMTGQDAVNVAETFNERLDITGVILTKLDGDTRGGAALSIRSVTGK 269

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F G GE + D E F  +  ++ I G  D
Sbjct: 270 PIKFSGRGEKLEDFEIFYPERMASRILGMGD 300


>gi|170781182|ref|YP_001709514.1| signal recognition particle protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155750|emb|CAQ00871.1| signal recognition particle protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 523

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 153/311 (49%), Gaps = 24/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L E   ++    +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FGTLSDRLAETFKNLRGKGKLSAADVDGTVREIRRALLEADVALDVVKAFTASVRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L    +     F+ RP  VI++ G+ G GKTT+ GK
Sbjct: 64  GEVSQALNPAQQVVQIVNEELVAILGGQQR--RIQFAKRPPTVIMLAGLQGAGKTTLAGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L K ++  G   ML A D  R  A+ QL++  ++        E G+   +   +A +A K
Sbjct: 122 LGKWLAKDGHTPMLVAADLQRPNAVQQLQVVGEQAGVPVFAPEPGNGTGNPVRVAKDAMK 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A  K+  V+IIDTAGRL  ++ LM    +   + K  DP     VL V+DA  GQ+A+ 
Sbjct: 182 HAVGKQYSVVIIDTAGRLGVDAELMK---QAADIRKATDPD---EVLFVIDAMIGQDAVA 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG++++K+DG ARGG  + +      P+ F   GEG++D EPF     +
Sbjct: 236 TAKAFQDGVDFTGVVLSKLDGDARGGAALSVASVTGRPIMFASTGEGLDDFEPFHPDRMA 295

Query: 308 AVITGCLDYGE 318
           + I   LD G+
Sbjct: 296 SRI---LDLGD 303


>gi|152999786|ref|YP_001365467.1| signal recognition particle protein [Shewanella baltica OS185]
 gi|151364404|gb|ABS07404.1| signal recognition particle protein [Shewanella baltica OS185]
          Length = 457

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL ++ V+E L ++   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + K +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K V++ + D +R AAI QL+  A   + +F  S++      +A  A   A+
Sbjct: 121 GKFLRERHKKSVLVVSADVYRPAAIKQLETLAQEVAVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|149201382|ref|ZP_01878357.1| signal recognition particle protein [Roseovarius sp. TM1035]
 gi|149145715|gb|EDM33741.1| signal recognition particle protein [Roseovarius sp. TM1035]
          Length = 504

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 137/269 (50%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  ++ + ++   + V+      Q+V+  V + + + L     P     
Sbjct: 38  LLEADVSLPVARDFIKTVESRATGQAVTKSVTPGQQVVKIVHDALVETLRGEGDPGALKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT   KL+K++ D  G +V++A+ DT R AA++QL I   +  
Sbjct: 98  DNPPAPILMVGLQGSGKTTTTAKLAKRLKDREGKRVLMASLDTNRPAAMEQLAILGKQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G D   +A  A  QA     DV ++DTAGRLH ++ L+A    +       D
Sbjct: 158 VDTLPIVKGEDPVQIAKRAKTQAALGGYDVYMLDTAGRLHIDAELIAQAAAV------RD 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ+A+     F    G TG+++T+MDG  RGG  + +      P+
Sbjct: 212 VANPRETLLVVDGLTGQDAVNVATEFDDKIGVTGVVLTRMDGDGRGGAALSMRAITGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F     +  I G  D
Sbjct: 272 RFVGLGEKMDALETFEPDRIAGRILGMGD 300


>gi|88608106|ref|YP_506423.1| signal recognition particle protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600275|gb|ABD45743.1| signal recognition particle protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 449

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 152/292 (52%), Gaps = 22/292 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDV-S 89
           +I+ +  DD VR+ L    + +D+ + V ++ +    E ++ K   K +S   V+  V  
Sbjct: 21  VITEKEFDDFVRK-LRLTFLEADVSLPVTKQFIANVRESVIGKSRVKGISTPAVIGSVVK 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLA 145
           E + K+L   S+ F +       +++ VG+ GVGKTT   KL+    KK       ++L+
Sbjct: 80  EELVKILGGESQKFEFP-KFGKQILMFVGLQGVGKTTTAAKLALLIRKKFKK---NILLS 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK--QAQAKKVDVLIIDTAG 203
           + D +R AA  QL+I A +   D V    G D  A+  +         +  DVL++DTAG
Sbjct: 136 SVDIYRPAARKQLEILAKQIDVDTVPIVEGEDVDAIVKKTLDLFNNSHEGYDVLMVDTAG 195

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R   +S+LM    + ++V+K  +   P  + QVLDA  GQ++L     FH+  GTTG+I+
Sbjct: 196 RSQIDSVLM----EELKVIK--NRLQPSEIFQVLDAMMGQDSLNVARTFHSEIGTTGVIV 249

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +++D  AR G ++ +  +  +P+ F G GE +NDLE F  +  +  I G  D
Sbjct: 250 SRLDSDARVGSVLSVRQSVGLPIRFCGAGERVNDLEEFHPERMAGRIMGAGD 301


>gi|321462130|gb|EFX73155.1| hypothetical protein DAPPUDRAFT_325390 [Daphnia pulex]
          Length = 506

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 134/269 (49%), Gaps = 14/269 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWD 106
           L+ SD+ + + +++ E + +       A  ++ +R++      ELI K++ P  KP+   
Sbjct: 39  LLESDVNIRLVKQLRENVKSVIDFDDMAGGLNKRRMIQSAVFKELI-KLVDPGVKPYQ-P 96

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              RP+VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +  
Sbjct: 97  VKGRPNVIMFVGLQGSGKTTTCTKLAYHYMKKGWKSCLVCADTFRAGAYDQLKQNATKAR 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             F  S    D   +A E     +A+  + +++DT+GR      L   + ++   +K   
Sbjct: 157 IPFYGSYTEVDPVVIAQEGVDMFKAENFEFIVVDTSGRHKQEDSLFEEMLQVSNAVK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P +++ V+DA+ GQ    Q   F        +I+TK+DG A+GGG +  V   + PV
Sbjct: 214 ---PDNIIFVMDASIGQACEAQARAFKEKVDVGSVIITKLDGHAKGGGALSAVAATQSPV 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G GE I+DLE F  K F + + G  D
Sbjct: 271 IFIGTGEHIDDLESFKTKPFISKLLGLGD 299


>gi|71755401|ref|XP_828615.1| signal recognition particle 54 kDa [Trypanosoma brucei TREU927]
 gi|70834001|gb|EAN79503.1| signal recognition particle 54 kDa [Trypanosoma brucei]
 gi|261334497|emb|CBH17491.1| signal recognition particle 54 kDa, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 487

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 140/282 (49%), Gaps = 15/282 (5%)

Query: 42  DDGVREELEDL---LIRSDIGV----AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIH 93
           +D V+E L ++   L+++D+ V     + Q +  E+     A  ++ +++L   V   I 
Sbjct: 25  EDDVKEFLNEVARALLQADVNVKTVKELQQNVRAEVAITAEAAGLNKRKMLQTAVFNGIK 84

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           KML P  KPF      +  +++ VG+ G GKTT   K +      GLK  L   DTFR+ 
Sbjct: 85  KMLDPGVKPF-IPAKGKTSIVMFVGLQGSGKTTSCTKYAAYFQRKGLKTGLVCADTFRAG 143

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQL+  A +    F  S   +D   +A E   + + +K D++I+DT+GR    S L  
Sbjct: 144 AYDQLRQNATKAKVRFYGSLTEADPVIIAKEGVLELKKEKYDLIIVDTSGRHKQESALFE 203

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++ + +K      P+ ++ V+ AT GQ    Q   F        +I+TK+DG A+GG
Sbjct: 204 EMKQVQQAVK------PNDIVFVMSATDGQGIEEQARQFKEKVPIGSVIVTKLDGQAKGG 257

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +  V   K P+ F+G GE  +D E F  + F + + G  D
Sbjct: 258 GALAAVAMTKSPIVFIGTGEHFDDFELFQPESFVSRMLGMGD 299


>gi|297380328|gb|ADI35215.1| signal recognition particle protein [Helicobacter pylori v225d]
          Length = 448

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSASAFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|254439394|ref|ZP_05052888.1| signal recognition particle protein [Octadecabacter antarcticus
           307]
 gi|198254840|gb|EDY79154.1| signal recognition particle protein [Octadecabacter antarcticus
           307]
          Length = 502

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 141/272 (51%), Gaps = 18/272 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSELIHKMLMPLSKPFN 104
           L+ +D+ ++VA+  +  +  K   + V+        V ++++D  EL+H +L     P  
Sbjct: 38  LLEADVSLSVARDFINAVQEKASGQSVTKSVTPGQQVVKIVHD--ELVH-VLQGDGDPGA 94

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD 163
               + P  IL+VG+ G GKTT   KL+K++ +  G KV++A+ D  R AA++QL+I   
Sbjct: 95  LKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKERDGKKVLMASLDVNRPAAMEQLQILGA 154

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +   D +    G D   +A  A   A     DV I+DTAGRLH ++ L+A    +  V +
Sbjct: 155 QIGVDTLPIVKGEDPVKIAKRAKTAAAMGGYDVYILDTAGRLHIDAELIAQAAAVRDVAQ 214

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P   L V+D  TGQ+A+     F    G TG+++T+MDG  RGG  + +     
Sbjct: 215 ------PRETLLVVDGLTGQDAVNVATEFDDKIGVTGVVLTRMDGDGRGGAALSMRAVTG 268

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+G+GE ++ +E F A+  +  I G  D
Sbjct: 269 KPIRFVGLGEKMDAIEEFHAERVAGRILGMGD 300


>gi|148544379|ref|YP_001271749.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Lactobacillus reuteri DSM 20016]
 gi|184153743|ref|YP_001842084.1| signal recognition particle protein [Lactobacillus reuteri JCM
           1112]
 gi|227363196|ref|ZP_03847330.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus reuteri
           MM2-3]
 gi|325682699|ref|ZP_08162215.1| signal recognition particle protein [Lactobacillus reuteri MM4-1A]
 gi|148531413|gb|ABQ83412.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Lactobacillus reuteri DSM 20016]
 gi|183225087|dbj|BAG25604.1| signal recognition particle protein [Lactobacillus reuteri JCM
           1112]
 gi|227071802|gb|EEI10091.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus reuteri
           MM2-3]
 gi|324977049|gb|EGC14000.1| signal recognition particle protein [Lactobacillus reuteri MM4-1A]
          Length = 481

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 140/280 (50%), Gaps = 16/280 (5%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96
           +RE + ++   L+ +D+   V +  V+ +  K    +V       Q+++  V++ + K++
Sbjct: 28  LRETMREIRLALLEADVNFKVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVNDELTKLM 87

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAI 155
              + P N    H P VI++VG+ G GKTT  GKL+ ++ +    + M  A D +R AAI
Sbjct: 88  GEEAVPLNK-APHIPTVIMMVGLQGAGKTTTAGKLALRLKNENHARPMFIAADVYRPAAI 146

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            QL+  AD+            D   +  E  + AQ    D +IIDTAGRL  +  LM  +
Sbjct: 147 TQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVAQKNHNDYVIIDTAGRLQIDEQLMDEL 206

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +  ++       P+ +L V+D+ TGQNA+   + F      TG+I+TK+DG  RGG  
Sbjct: 207 ANIKELVN------PNEILLVIDSMTGQNAVNTAQGFDDKLDITGVILTKLDGDTRGGAA 260

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G GE + DL+ F     ++ I G  D
Sbjct: 261 MSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASRILGMGD 300


>gi|332372642|gb|AEE61463.1| unknown [Dendroctonus ponderosae]
          Length = 505

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 139/279 (49%), Gaps = 14/279 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYDV--SELIHKML 96
           +G+ +E+   L+ +D+ V + + + E +         A  ++ +R++      EL+ K++
Sbjct: 29  NGMLKEICAALLEADVNVKMVKALRENVRAVIDFDEMAGGLNKRRMIQSAVFKELV-KLV 87

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P  KPF      +P++I+ VG+ G GKTT   K++        K  L   DTFR+ A D
Sbjct: 88  DPSVKPFQ-PVKGKPNIIMFVGLQGSGKTTTCTKMAYYYQKKNWKSCLVCADTFRAGAYD 146

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           Q+K    +    F  S    D   +A +  +  + +  +++I+DT+GR      L   + 
Sbjct: 147 QVKQNCTKARIPFYGSYTEVDPVIIAQDGVEMFKKEHFEIIIVDTSGRHKQEDSLFEEML 206

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           ++   +K      P +++ V+DAT GQ    Q   F A      +I+TK+DG A+GGG +
Sbjct: 207 QVSNAVK------PDNIVFVMDATIGQACEEQARAFKAKVDVGSVIITKLDGHAKGGGAL 260

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             V     P+ F+GVGE I+DLEPF  K F + + G  D
Sbjct: 261 SAVAATSSPIIFIGVGEHIDDLEPFKTKPFISKLLGMGD 299


>gi|283798055|ref|ZP_06347208.1| signal recognition particle protein [Clostridium sp. M62/1]
 gi|291074194|gb|EFE11558.1| signal recognition particle protein [Clostridium sp. M62/1]
 gi|295091808|emb|CBK77915.1| signal recognition particle protein [Clostridium cf.
           saccharolyticum K10]
          Length = 452

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F S + KL+    ++    RL +     G+RE ++  L+ +D+   V ++ +  +  +  
Sbjct: 3   FESLADKLQNVFKNLTGKGRLSEADVKAGLRE-VKMALLEADVSFKVVKQFINSVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++           ++   VIL+ G+ G GKTT   K
Sbjct: 62  GQDVLNGLNPGQMVIKIVNEELVKLMGSEMTEIALRPANEITVILMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G   +LAA D +R AAI+QLKI  ++          G     +A  A + A 
Sbjct: 122 IAGKLKAKGRSPLLAACDIYRPAAIEQLKINGEKQGVPVFSMGTGHKPVNIAKAAIEHAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRLH +  +M    +++ + + +   +    L ++DA TGQ+A+    
Sbjct: 182 KNGNNVVILDTAGRLHIDEDMM---NELVEIKENV---SVDQTLLIVDAMTGQDAVNVAG 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           MF+   G  G+I+TKMDG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 MFNDKIGIDGVILTKMDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|84998408|ref|XP_953925.1| signal recognition particle 54kDa protein 2 [Theileria annulata]
 gi|65304923|emb|CAI73248.1| signal recognition particle 54kDa protein 2, putative [Theileria
           annulata]
          Length = 495

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 134/273 (49%), Gaps = 22/273 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS----------VQRVLYDVSELIHKMLMPLSKP 102
           L+ +D+ V +  K+ E +  KR  K+ S          +Q+++ D  EL++ ML    KP
Sbjct: 39  LLMADVNVKLVHKLKENV--KRLNKNNSDMIGANKRRYLQKIVVD--ELVN-MLTTEKKP 93

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           F      R +VI+ VG+ G GKTT   K +      G +  L   DTFR+ A DQLK  A
Sbjct: 94  FEPK-KGRCNVIMFVGLQGAGKTTSCTKFAYHYQRKGWRTALICADTFRAGAFDQLKQNA 152

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +    F  S   ++ A +A +   + + +K D++I+DT+GR      L   + K+I   
Sbjct: 153 AKVKISFYGSYSEANPAKVAADGVARFKEEKYDMIIVDTSGRHKQEDALFDEM-KLI--- 208

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
              D   P  V+ V+D+  GQ    Q   F+       +I+TK+DG A+GGG +  V   
Sbjct: 209 --YDAVQPDEVVFVMDSHIGQACYDQASAFNKAVDVGSVIITKLDGHAKGGGALSAVSAT 266

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+G GE  +D EPF  K F + + G  D
Sbjct: 267 NSPIIFIGTGEHFDDFEPFDPKSFISRLLGFGD 299


>gi|284928857|ref|YP_003421379.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [cyanobacterium UCYN-A]
 gi|284809316|gb|ADB95021.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [cyanobacterium UCYN-A]
          Length = 494

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 10/193 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VIL+VG+ G GKTT   KL+  +       ++ A D +R AAIDQLK    +   +  
Sbjct: 100 PTVILMVGLQGTGKTTATAKLAHYLKKQKQSCLMVAADIYRPAAIDQLKTLGQQI--EVP 157

Query: 171 CSEIGS--DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
             E+G+  +   +A +   +A+  + DV+IIDTAGRL  +       G M+ + +  +  
Sbjct: 158 VFELGNQENPVNIALQGVNKAKEIEADVVIIDTAGRLQIDQ------GMMLELTQIKESI 211

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            PH  L V+DA TGQ A    + FH     TG I+TKMDG  RGG  + +      P+ F
Sbjct: 212 NPHDTLLVVDAMTGQEAANLAQTFHEKIKITGTILTKMDGDTRGGAALSVRKVSGQPIKF 271

Query: 289 LGVGEGINDLEPF 301
           +GVGE I  L+PF
Sbjct: 272 VGVGEKIEALQPF 284


>gi|67924644|ref|ZP_00518055.1| Signal recognition particle protein [Crocosphaera watsonii WH 8501]
 gi|67853517|gb|EAM48865.1| Signal recognition particle protein [Crocosphaera watsonii WH 8501]
          Length = 488

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 141/281 (50%), Gaps = 29/281 (10%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D I+   + D ++E +   L+ +D+ + V +  + E+       +V         + +++
Sbjct: 20  DKITEANMQDALKE-VRRALLEADVNLQVVKTFIAEVEKAAIGAEVIAGVNPGQQLIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL++         P VIL+ G+ G GKTT   KLS  +       
Sbjct: 79  YD--ELVKVMGESNVPLAQA-----EKSPTVILMAGLQGTGKTTATAKLSLYLRKQERTC 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIID 200
           ++ A D +R AAIDQLK   ++   +    E+G+ A    +A +   +A+   +D +IID
Sbjct: 132 LMVATDIYRPAAIDQLKTLGEQI--EVPVFELGTQANPVDIATQGVAKAKEMGIDTVIID 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  +M    ++ RV K ++P      L V+DA TGQ A      FH   G TG
Sbjct: 190 TAGRLQIDEEMML---ELARVKKAVNPD---DTLLVVDAMTGQEAANLTRTFHEQIGVTG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            I+TKMDG  RGG  + +      P+ F+GVGE +  L+PF
Sbjct: 244 AILTKMDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPF 284


>gi|317152476|ref|YP_004120524.1| signal recognition particle protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942727|gb|ADU61778.1| signal recognition particle protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 501

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 151/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L          +RLD D +RE L ++   L+ +D+   V +  V+++  K  A
Sbjct: 2   FESLQERLGNAFQKFKGQKRLDEDNIREGLREVRLALLEADVNFKVVKGFVDQV--KERA 59

Query: 77  KDVSVQRVL---YDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               V + L     + ++++  L+ L   +    D   +P  +++VG+ G GKTT  GK+
Sbjct: 60  LGEEVMKGLDPGAQIIKIVNDELVELLGGEQQGLDLVAKPLKVMMVGLQGSGKTTSSGKI 119

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +  + G K  L   D +R AAIDQL   A +       S  G +   +  +A  +A 
Sbjct: 120 ALFLRKNHGRKPYLVPADVYRPAAIDQLNTLARQLDVPVYPSTTGMNPVDICRDAMAKAG 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D+++ DTAGRLH +  LM  +  + +        +P  +L V DA TGQ+A+   E
Sbjct: 180 ELGCDLILFDTAGRLHIDETLMDELENIKQAC------SPQEILFVADAMTGQDAVTVAE 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+++TKMDG ARGG  + I      PV F+G+GE +++LE F     ++ I
Sbjct: 234 AFNNKLGITGVVLTKMDGDARGGAALSIKSVTGRPVKFVGMGEKLSELELFHPDRIASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|170025580|ref|YP_001722085.1| signal recognition particle protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169752114|gb|ACA69632.1| signal recognition particle protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 453

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +   K V++ + D +R AAI QL+  A    
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLIVSADVYRPAAIKQLETLAQGVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S+       +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++   +K   
Sbjct: 157 IDFFPSDAQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I      P+
Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLGVGE  + LEPF     ++ I G  D
Sbjct: 271 KFLGVGEKSDALEPFHPDRIASRILGMGD 299


>gi|167385123|ref|XP_001737215.1| signal recognition particle 54 kDa protein [Entamoeba dispar
           SAW760]
 gi|165900054|gb|EDR26502.1| signal recognition particle 54 kDa protein [Entamoeba dispar
           SAW760]
          Length = 487

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 142/275 (51%), Gaps = 14/275 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYD--VSELIHKMLMPLS 100
           +E+E  L+  D+     +++V  +  K  ++D+      ++++ D    ELI+ ++ P +
Sbjct: 33  KEIETSLLGEDVNPIFIRQMVNNIKKKINSEDIPDGIDKRKLIKDSVFEELIN-LVDPKT 91

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           +PF      +  V+++VG+ G GKTT I KL+    + G K  +   DTFR+ A +QL++
Sbjct: 92  EPFKPK-KGKTCVLMMVGLQGAGKTTTITKLALYYKNRGYKPAVVGADTFRAGAYEQLQM 150

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A R    F   +  SD   +A E  +  + +K D++++DT+GR   +  L   +  +  
Sbjct: 151 NAKRAGVPFFGIKEESDPVKVASEGVRTFRKEKNDIILVDTSGRHKQDKELFKEMQSVRD 210

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
            +K      P S++ V+D   GQ A  Q + F        +I+TK+DG + GGG +  V 
Sbjct: 211 AIK------PDSIIFVMDGAIGQAAFGQAKAFKDAVEVGSVIITKLDGHSNGGGALSAVA 264

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             K P+ F+G GE +N++E F A+ F   + G  D
Sbjct: 265 ATKSPIIFIGTGEKVNEIEEFDAESFVRKLLGMGD 299


>gi|224532367|ref|ZP_03672997.1| signal recognition particle protein [Borrelia burgdorferi WI91-23]
 gi|225549895|ref|ZP_03770856.1| signal recognition particle protein [Borrelia burgdorferi 118a]
 gi|224512674|gb|EEF83045.1| signal recognition particle protein [Borrelia burgdorferi WI91-23]
 gi|225369354|gb|EEG98806.1| signal recognition particle protein [Borrelia burgdorferi 118a]
          Length = 444

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 15/276 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103
           E +++ L+ +D+ + V ++ +  ++ +  +K V V R +   S+ I  +   L K     
Sbjct: 32  EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89

Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           N++ S  P      IL++G+ G GKTT   KLS K+     KV+L A DTFR+AA++QLK
Sbjct: 90  NYELSLHPANKQSYILMLGLQGSGKTTTCVKLSLKLKKENRKVLLVAADTFRAAAVEQLK 149

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I   +        E   D   +   + K A++   D +I+DT GRL   S+L+  I K+ 
Sbjct: 150 ILGGQVGVPVFSIEGEKDPIKIVKASMKFAESNFFDSVIVDTRGRLEIESLLVEEIKKIK 209

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            +L+      P   + V+D+  GQ A+   + F+   G TG I +K D   RGG ++   
Sbjct: 210 GILR------PAETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +P+ F+GVGE I DL+ F  +  ++ I G  D
Sbjct: 264 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 299


>gi|91794106|ref|YP_563757.1| signal recognition particle protein [Shewanella denitrificans
           OS217]
 gi|91716108|gb|ABE56034.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           denitrificans OS217]
          Length = 457

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 156/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL DD ++E L ++   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTDDNIKETLREVRMALLEADVALPVVREFVNSVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + K +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELEKAMGESNEALDL-AAIPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +     K V++ + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLAAEVEVEFFPSDVSQKPLDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K +DV+I+DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFIDVVIVDTAGRLHVDEAMMDEIKQL---------HASINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     +
Sbjct: 232 TAKAFNEALPLTGVILTKVDGDARGGAALSIRNITGKPIKFLGVGEKTDALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|260429470|ref|ZP_05783447.1| signal recognition particle protein [Citreicella sp. SE45]
 gi|260420093|gb|EEX13346.1| signal recognition particle protein [Citreicella sp. SE45]
          Length = 507

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 148/286 (51%), Gaps = 21/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSE 90
           +D VR  L ++   L+ +D+ + VA++ ++ +        +TK       V ++++D  E
Sbjct: 24  EDDVRTALREVRVALLEADVSLPVARQFIKAVEKKATGAAVTKSVTPGQQVVKIVHD--E 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDT 149
           LI  +L    +P        P  IL+VG+ G GKTT   KL++++ +    KV++A+ D 
Sbjct: 82  LIA-VLAGEGEPGALRIDSPPAPILMVGLQGGGKTTTTAKLARRLKERDHKKVLMASLDV 140

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            R AA++QL+I   +   D +    G D  A+A  A  QA     DV ++DTAGRL  + 
Sbjct: 141 NRPAAMEQLEILGKQIGVDTLPIVKGEDPVAIAKRAKTQAALGGYDVYMLDTAGRLSIDE 200

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LMA + + +R     D   P   L V+D  TGQ+A+   E F +  G TG+++T+MDG 
Sbjct: 201 ELMAQV-EAVR-----DVANPRETLLVVDGLTGQDAVHTAENFDSRIGITGVVLTRMDGD 254

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            RGG  + +      P+ F+G+GE ++ LE F     +  I G  D
Sbjct: 255 GRGGAALSMRAVTGKPIKFVGLGEKMDALETFEPDRVAGRILGMGD 300


>gi|225548907|ref|ZP_03769884.1| signal recognition particle protein [Borrelia burgdorferi 94a]
 gi|225370510|gb|EEG99946.1| signal recognition particle protein [Borrelia burgdorferi 94a]
          Length = 444

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 141/276 (51%), Gaps = 15/276 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103
           E +++ L+ +D+ + V ++ +  ++ +  +K V V R +   S+ I  +   L K     
Sbjct: 32  EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89

Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           N++ S  P      I+++G+ G GKTT   KLS K+     KV+L A DTFR+AA++QLK
Sbjct: 90  NYELSLHPTNKQSYIIMLGLQGSGKTTTCAKLSLKLKKENRKVLLVAADTFRAAAVEQLK 149

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I   +        E   D   +   + K A++   D +I+DT GRL   S+L+  I K+ 
Sbjct: 150 ILGGQVGVPVFSIEGEKDPIKIVKASMKFAESNFFDSVIVDTRGRLEIESLLVEEIKKIK 209

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            +L+      P   + V+D+  GQ A+   + F+   G TG I +K D   RGG ++   
Sbjct: 210 GILQ------PAETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +P+ F+GVGE I DL+ F  +  ++ I G  D
Sbjct: 264 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 299


>gi|257462434|ref|ZP_05626847.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp.
           D12]
 gi|317060096|ref|ZP_07924581.1| signal recognition particle protein [Fusobacterium sp. D12]
 gi|313685772|gb|EFS22607.1| signal recognition particle protein [Fusobacterium sp. D12]
          Length = 449

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 6/208 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V+++ G+ G GKTT  GKL+K +     +V+L A D +R AAI QL++  ++   
Sbjct: 97  SKNPTVLMLSGLQGAGKTTFAGKLAKFLKKQNERVLLVAADVYRPAAIKQLQVLGEQVEV 156

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                E   D   +   A ++A+ +    +IIDTAGRLH +  LM  + K I+ L R   
Sbjct: 157 SVYAEEGHQDVLGICERALEKAKEEHDTYMIIDTAGRLHIDETLMEEL-KNIKRLTR--- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+  GQ+A+   + F+      G+++TK+DG  RGG  + I      P+ 
Sbjct: 213 --PQEILLVVDSMIGQDAVNLAKSFNENLSIDGVVLTKLDGDTRGGAALSIKSVVGKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+GVGE ++D+E F      + I G  D
Sbjct: 271 FIGVGEKLDDIELFHPDRLVSRILGMGD 298


>gi|259417053|ref|ZP_05740972.1| signal recognition particle protein [Silicibacter sp. TrichCH4B]
 gi|259345959|gb|EEW57773.1| signal recognition particle protein [Silicibacter sp. TrichCH4B]
          Length = 519

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 137/269 (50%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVA----QKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA    +K+ E+   +   K V+  Q+V+  V + +   L     P     
Sbjct: 43  LLEADVSLPVARDFVKKVQEQATGQAVTKSVTPGQQVVKIVHDALVDTLRGEDDPGALKI 102

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P  IL+VG+ G GKTT  GKL+K++ +  G KV+LA+ D +R AA+DQL +   +  
Sbjct: 103 DSPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKKVLLASLDVYRPAAMDQLAVLGTQIG 162

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G     +A  A +QA     DV ++DTAGRL  + +LM  +  +  V+    
Sbjct: 163 VDTLPIVKGQTPVDIAKRAKQQAALGGYDVYMLDTAGRLQIDEVLMKEVEDVRDVV---- 218

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             +P   L V+D  TGQ A+   E F    G +G+++T+MDG  RGG  + +      P+
Sbjct: 219 --SPRETLLVVDGLTGQVAVEVAEEFDNKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 276

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ +E F     +  I G  D
Sbjct: 277 RFVGLGEKMDAIETFEPDRIAGRILGMGD 305


>gi|308177268|ref|YP_003916674.1| signal recognition particle protein Ffh [Arthrobacter arilaitensis
           Re117]
 gi|307744731|emb|CBT75703.1| signal recognition particle protein Ffh [Arthrobacter arilaitensis
           Re117]
          Length = 521

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 151/316 (47%), Gaps = 28/316 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     DG   E+   L+ +D+ V V +  V ++  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLTEADIDGTAREIRRALLDADVAVPVVRGFVAQVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSESLNPGQQVVKIVNEELVGILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------SDAAALA 182
           +K +   G   ML A D  R  A+ QL+I  +R          G          D   +A
Sbjct: 121 AKHLKAEGHTPMLVACDLQRPNAVKQLQINGERAGVPVYAPHPGVSSEFDTPTGDPVTVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +   +A+AK  D++I+DTAGRL  ++ +MA    +   +       P  VL V+DA  G
Sbjct: 181 RDGVAEAKAKLHDIVIVDTAGRLGVDTEMMAQAANIRAAIN------PDEVLFVIDAMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+   + FH     TG++++K+DG ARGG  + +      PV F   GE ++D E F 
Sbjct: 235 QDAVNTAQAFHEGVDFTGVVLSKLDGDARGGAALSVASVTGKPVMFASTGENLDDFEIFH 294

Query: 303 AKDFSAVITGCLDYGE 318
               ++ I   LD G+
Sbjct: 295 PDRMASRI---LDMGD 307


>gi|222150100|ref|YP_002551057.1| signal recognition particle protein [Agrobacterium vitis S4]
 gi|221737082|gb|ACM38045.1| signal recognition particle protein [Agrobacterium vitis S4]
          Length = 526

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 114/206 (55%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GK++K+++D   K V++A+ DT R AA +QL+    +T  D 
Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTDRDRKKVLMASLDTRRPAAQEQLRQLGVQTGVDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +   +G     +A  A + A+    DV+I+DTAGR H +  LM  +  + +  K      
Sbjct: 160 LPIIVGQSPTDIASRAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKNAK------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V DA TGQ+A+     F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADALTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE + +L+ F  +  +  I G  D
Sbjct: 274 GVGEKMTELDEFHPRRIADRILGMGD 299


>gi|212639591|ref|YP_002316111.1| signal recognition particle GTPase [Anoxybacillus flavithermus WK1]
 gi|212561071|gb|ACJ34126.1| Signal recognition particle GTPase [Anoxybacillus flavithermus WK1]
          Length = 446

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 114/210 (54%), Gaps = 8/210 (3%)

Query: 108 SHRPH-VILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT 165
           S+RP  V+++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    + 
Sbjct: 97  SNRPPTVVMMVGLQGAGKTTTTGKLANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQL 156

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +              +A +A  +A+ +  D ++IDTAGRLH +  LM  + ++  V K  
Sbjct: 157 NIPVFSLGDQVSPVEIAKQAIAKAKEEHYDYVLIDTAGRLHIDEALMDELKQIKEVTK-- 214

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  +  V+DA TGQ+A+   + F+   G TG+I+TK+DG  RGG  + I      P
Sbjct: 215 ----PDEIFLVVDAMTGQDAVNVAQSFNEQLGLTGVILTKLDGDTRGGAALSIKAVTNTP 270

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G+GE ++ LEPF  +  ++ I G  D
Sbjct: 271 IKFVGMGEKLDALEPFHPERMASRILGMGD 300


>gi|255082746|ref|XP_002504359.1| type II secretory pathway family [Micromonas sp. RCC299]
 gi|226519627|gb|ACO65617.1| type II secretory pathway family [Micromonas sp. RCC299]
          Length = 512

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 43  DGVREELEDLLIRSDIGVA----VAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKML 96
           D   +E+   L+++D+ V     + + IV+++  +  A  ++ +++L     +EL++ ML
Sbjct: 29  DACLKEVTKALLQADVNVQYVVQMKKNIVKQVNIQELAAGLNARKLLEKAVFNELVN-ML 87

Query: 97  MPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                     F     +P+V++ VG+ G GKTT   K +      G K  L   DTFR+ 
Sbjct: 88  EGGGAEVKEKFVPKKGKPNVVMFVGLQGCGKTTTCTKYAYHFQKKGYKPALVCADTFRAG 147

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQLK  A +    F  S   +D A +A +  ++ + +K D++I+DT+GR      L  
Sbjct: 148 AFDQLKQNATKARIPFYGSYTETDPAKIAADGVERFKDEKNDLIIVDTSGRHKQEDSLFE 207

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++   ++      P   + V+D++ GQ A  Q   F A      +I+TK+DG A+GG
Sbjct: 208 EMRQVAAAVQ------PDMTIFVMDSSIGQAAQDQARAFKATVDVGSVIITKLDGHAKGG 261

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           G I  V   K P+ F+G GE I++ E F  K F + + G  D+
Sbjct: 262 GAISAVAATKSPIAFIGTGEHIDEFEAFDTKPFVSRLLGLGDW 304


>gi|42543564|pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
           Domains Signal Recognition Particle (Ffh) And Its
           Receptor (Ftsy)
          Length = 300

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 143/309 (46%), Gaps = 28/309 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + V +  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           K V       + +L  V E + + L     +P+ K  N  F        +VG+ G GKTT
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 113

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+      G + +L A DT R AA +QL++  ++     +    G    ++     
Sbjct: 114 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL
Sbjct: 174 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 227

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  
Sbjct: 228 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 287

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 288 AGRILGMGD 296


>gi|237746900|ref|ZP_04577380.1| signal recognition particle [Oxalobacter formigenes HOxBLS]
 gi|229378251|gb|EEO28342.1| signal recognition particle [Oxalobacter formigenes HOxBLS]
          Length = 455

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 137/258 (53%), Gaps = 15/258 (5%)

Query: 53  LIRSDIGVAVAQ----KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPL-SKPFNW 105
           L+ +D+ + V +    K+ E+ L K     +S  + L  V   EL + M   L  K    
Sbjct: 38  LLEADVALPVVKNFIGKVREKALGKEVMDSLSPGQALVGVVQQELANIMGADLGEKSSRL 97

Query: 106 DFSHRPH-VILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           +F+ +P  VIL+ G+ GVGKTT +GKL++ +  +   KV+  + D +R AAI QL+  + 
Sbjct: 98  NFATQPPAVILMAGLQGVGKTTTVGKLARYLRQEKKKKVLTVSTDVYRPAAIKQLETVSG 157

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           ++ ADF   +I     A+A  A   A+    DVLI+DTAGRL  +  +M  I  + + L 
Sbjct: 158 QSGADFFQPDISEQPVAIARAALDHARRHFYDVLIVDTAGRLGIDEQMMQEISGLHQAL- 216

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                +P   L V+DA  GQ+A+     F+     TG+++TK+DG ARGG  + +     
Sbjct: 217 -----SPIETLFVVDAMLGQDAINVARSFNEALPLTGIVLTKLDGDARGGAALSVRHITG 271

Query: 284 IPVYFLGVGEGINDLEPF 301
            PV F+GV E ++ LE F
Sbjct: 272 KPVKFVGVSEKLDGLEEF 289


>gi|269860608|ref|XP_002650024.1| signal recognition particle receptor alpha subunit [Enterocytozoon
           bieneusi H348]
 gi|220066575|gb|EED44052.1| signal recognition particle receptor alpha subunit [Enterocytozoon
           bieneusi H348]
          Length = 405

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 111/202 (54%), Gaps = 19/202 (9%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----- 164
           +P V   VGVNGVGK+T + K++K + +  L V +AA DTFR+ AI+QLK + D+     
Sbjct: 196 KPFVFCFVGVNGVGKSTSVAKMTKWLLEHKLSVFIAACDTFRAGAIEQLKTYVDQFITSG 255

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            +  F  S    D A +A  A  +A     DV++IDTAGR+HNN +LM+ + K+IR+   
Sbjct: 256 YNVGFYKSGYNKDDAIVAKTAIAKAHENNYDVVLIDTAGRMHNNGMLMSSLSKIIRM--- 312

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT-------GLIMTKMDGTARG-GGLI 276
              + P  ++ V +A TG ++L  VE F+              +I+TK+D   +  G + 
Sbjct: 313 ---NTPDHIVYVGEALTGNDSLNFVEEFNKYISNAQSGRIIDSIILTKIDTVDKKLGQIF 369

Query: 277 PIVVTHKIPVYFLGVGEGINDL 298
            +    + P+ FLG G+  +DL
Sbjct: 370 NLTFKAQAPILFLGCGQTNSDL 391


>gi|148244704|ref|YP_001219398.1| signal recognition particle, subunit SRP54 [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326531|dbj|BAF61674.1| signal recognition particle, subunit SRP54 [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 466

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 11/197 (5%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P +I+V G+ G GKTT + K++  +      KV++ + D +R AAI+QL++ + +  
Sbjct: 97  TQPPAIIMVAGLQGAGKTTSVAKIAFYLKQRENKKVLVVSADVYRPAAIEQLEVLSKQIE 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S I    + +   A + AQ +  DVL++DTAGRLH +  +M  I K+++  K++D
Sbjct: 157 VDFFPSTINDKPSDIVANAKRYAQKQFFDVLLVDTAGRLHIDEQMMNEI-KILQ--KKVD 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI-- 284
           P      L V+D+ TGQ+A+   ++F      TG+I+TK DG ARGG  +   V H I  
Sbjct: 214 PI---ETLFVIDSMTGQDAVHTAKVFSNALPLTGVILTKTDGDARGGAALS--VRHIIGK 268

Query: 285 PVYFLGVGEGINDLEPF 301
           P+ FLGVGE I+ LE F
Sbjct: 269 PIKFLGVGEKIDALELF 285


>gi|32490997|ref|NP_871251.1| hypothetical protein WGLp248 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166203|dbj|BAC24394.1| ffh [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 446

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 148/286 (51%), Gaps = 22/286 (7%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI--- 92
           ++S  ++D +R+ +   L+ +D+ + V QK ++E+  K+ + D  +   L    E I   
Sbjct: 23  LTSENINDTLRQ-VRIALLEADVALVVVQKFIQEI--KKISLDKKINNYLTPGQEFIKIV 79

Query: 93  HKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            K L+ +  SK  N +F     VI ++G+ G GKTT  GKL+K + +   K V+  + D 
Sbjct: 80  QKELIKIIGSKNNNLNFCSGRSVIFLIGLQGSGKTTTTGKLAKYLKEKNKKKVLTVSSDV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLIIDTAGRLHN 207
           +R AA  QL++ +   + D   SE   +     YE  K A  K    DVL+IDTAG  H 
Sbjct: 140 YRPAAQKQLELVSKSANVDCFLSE---NLYKTPYEIVKSAMNKSSLYDVLLIDTAGFSHT 196

Query: 208 NSILMAGIGKMIRVLKRLDP-HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
           N        KMI+ ++ L    +P   L ++D+  GQ+++  ++ F+     TG+I+TK+
Sbjct: 197 NK-------KMIKEIQLLQSISSPSETLFIVDSMMGQDSINSIKTFNEKFSLTGVILTKL 249

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           DG +RGG  + I      P+ F+G GE I+ LE F  +  S  I G
Sbjct: 250 DGDSRGGIALSIKYITGKPIKFIGTGEKIDTLEIFSPEKLSKKILG 295


>gi|296283450|ref|ZP_06861448.1| signal recognition particle protein [Citromicrobium bathyomarinum
           JL354]
          Length = 495

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 142/274 (51%), Gaps = 18/274 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSK-----P 102
           L+ +D+ + VA+  +E +  K   + V  SV   Q+V+  V++ +  ML          P
Sbjct: 38  LLEADVALPVARDFIERVTEKAVGEAVLKSVTPGQQVVKIVNDELVAMLGGSDSEDGHVP 97

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIW 161
              D +  P VI++VG+ G GKTT   KL K + +  G K M+A+ D  R AA +QL + 
Sbjct: 98  LTLD-AKPPVVIMMVGLQGSGKTTSTAKLGKLIREKHGKKAMMASLDVNRPAAQEQLAVL 156

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            ++   D +    G     +A  A + A+ + VDV+++DTAGRLH +  LMA +  +  V
Sbjct: 157 GEQAQVDTLPIVEGQQPVDIARRALESAKLRNVDVVLLDTAGRLHVDEALMAEMKAVASV 216

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                   P  VL V+D+ TGQ+A+   + F      TG+I+T+MDG ARGG  + +   
Sbjct: 217 ------ATPTEVLLVVDSLTGQDAVNVAQSFSDEVPLTGVILTRMDGDARGGAALSMRAV 270

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ F GVGE ++ LE F  +  +  I G  D
Sbjct: 271 TGKPIKFAGVGEKLDALEAFHPRRVAERILGMGD 304


>gi|224534518|ref|ZP_03675094.1| signal recognition particle protein [Borrelia spielmanii A14S]
 gi|224514195|gb|EEF84513.1| signal recognition particle protein [Borrelia spielmanii A14S]
          Length = 444

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 149/287 (51%), Gaps = 16/287 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           I+ + + + V E +++ L+ +D+ + V ++ +  ++ +  +K V V R +   S+ I  +
Sbjct: 22  INEKNITEAV-EIIKNSLVDADVNLRVVRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIV 78

Query: 96  LMPLSKPF---NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
              L K     N++ S  P      IL++G+ G GKTT   KLS ++     KV+L A D
Sbjct: 79  NDNLVKFLGGKNYELSLHPINKQSYILMLGLQGSGKTTTSVKLSLRLKKENRKVLLVAAD 138

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+AA++QLKI   +        E   D   +   + K A+++  D +I+DT GRL   
Sbjct: 139 TFRAAAVEQLKILGSQIGVPVFSLEGEKDPIKIVKASMKFAKSEFFDSVIVDTRGRLEVE 198

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           S+L+  I K+  +L+      P   + V+D+  GQ A+   + F+   G TG I +K D 
Sbjct: 199 SLLVEEIKKIKGILQ------PTETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDS 252

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             RGG ++      ++P+ F+GVGE I DL+ F  +  ++ I G  D
Sbjct: 253 DTRGGAILSFKSICEVPIKFVGVGEKIEDLDSFYPERIASRILGMGD 299


>gi|15622349|dbj|BAB66341.1| 356aa long hypothetical signal recognition particle protein
           [Sulfolobus tokodaii str. 7]
          Length = 356

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 12/209 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+VI++VGV G GKTT  GKL+      G KV L A D +R AA DQL     + +    
Sbjct: 6   PYVIMLVGVQGSGKTTTAGKLALFYKKKGYKVGLVAADVYRPAAYDQLVQIGKQINVPVY 65

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-- 228
                +DA  +A    ++  ++K D++I+DTAGR         G G+ +++L+ +     
Sbjct: 66  GEPNNTDAVGIAKRGVEKFLSEKYDIIIVDTAGR--------HGYGEEVKLLEEMKNMYS 117

Query: 229 --APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  V+ V+DA+ GQ A      FH  +    +I+TKMDGTA+GGG +  V      +
Sbjct: 118 EIKPDEVILVIDASIGQKAYDLASRFHQASPIGSIIVTKMDGTAKGGGALSAVAATGAAI 177

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G GE +++LE F  + F + I G  D
Sbjct: 178 KFIGTGEKLDELEVFNPRRFVSRILGMGD 206


>gi|254779702|ref|YP_003057808.1| Signal recognition particle protein (SRP) [Helicobacter pylori B38]
 gi|254001614|emb|CAX29714.1| Signal recognition particle protein (SRP) [Helicobacter pylori B38]
          Length = 448

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 152/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLSGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  +  +  VL       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKGVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGIAYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|71033463|ref|XP_766373.1| signal recognition particle 54 kDa protein [Theileria parva strain
           Muguga]
 gi|68353330|gb|EAN34090.1| signal recognition particle 54 kDa protein, putative [Theileria
           parva]
          Length = 495

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 130/269 (48%), Gaps = 14/269 (5%)

Query: 53  LIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVLY----DVSELIHKMLMPLSKPFNWD 106
           L+ +D+ V +  K+ E +  L K  A  +   +  Y     V EL++ ML    KPF   
Sbjct: 39  LLMADVNVKLVHKLKENVKRLNKNNADMIGANKRRYLQKIVVDELVN-MLTTEKKPFEPK 97

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              R +VI+ VG+ G GKTT   K +      G +  L   DTFR+ A DQLK  A +  
Sbjct: 98  -KGRCNVIMFVGLQGAGKTTSCTKFAYHYQRKGWRTALICADTFRAGAFDQLKQNAAKVK 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             F  S   ++ A +A +   + + +K D++I+DT+GR      L   + K+I      D
Sbjct: 157 ISFYGSYSEANPAKVAADGVARFKEEKYDMIIVDTSGRHKQEDALFDEM-KLI-----YD 210

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  V+ V+D+  GQ    Q   F+       +I+TK+DG A+GGG +  V     P+
Sbjct: 211 AVQPDEVVFVMDSHIGQACYDQAAAFNKAVDVGSVIITKLDGHAKGGGALSAVSATNSPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G GE  +D EPF  K F + + G  D
Sbjct: 271 IFIGTGEHFDDFEPFDPKSFISRLLGFGD 299


>gi|325958306|ref|YP_004289772.1| signal recognition particle-docking protein FtsY [Methanobacterium
           sp. AL-21]
 gi|325329738|gb|ADZ08800.1| signal recognition particle-docking protein FtsY [Methanobacterium
           sp. AL-21]
          Length = 427

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/278 (32%), Positives = 151/278 (54%), Gaps = 21/278 (7%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK------RYAKDVS------VQR 83
           IS + ++D +  ELE  L+  D+ + VA+ I+  + T       R   DV+      +++
Sbjct: 147 ISEKDIED-ILFELEMSLLEGDVAMEVAETIITSVKTDLVGQKIRRRSDVAEFTREALKK 205

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
            + ++ ++  K L  L +      S  P  I+ VG+NG GKTT I K+S    + G   +
Sbjct: 206 AISEILDIPGKDLTSLLEEAKK--SGEPLKIMFVGINGTGKTTTIAKISTYFINKGYTPV 263

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           +AA DTFR+ AI+QL   AD      +  + G+D AA+A++A   A+AK  +++++DTAG
Sbjct: 264 IAASDTFRAGAIEQLTHHADNLDVKIIKHKKGADPAAVAFDAVAHARAKGKELVLVDTAG 323

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R+  N  LM  + K+ RV+K      P  ++ V DA TG +++ Q + F+      G+I+
Sbjct: 324 RMQTNINLMDEMKKIKRVIK------PDLIIYVGDALTGNDSVEQAKKFNDAVTVDGIIL 377

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           TK D  A+GG  + I    + P+ FLGVG+  +D+  F
Sbjct: 378 TKADADAKGGAALSIGYVIQKPILFLGVGQSYSDIIEF 415


>gi|320539046|ref|ZP_08038720.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Serratia symbiotica str. Tucson]
 gi|320030886|gb|EFW12891.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Serratia symbiotica str. Tucson]
          Length = 453

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/212 (37%), Positives = 113/212 (53%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT   KL K + +   K V++ + D +R AAI QL+  A+   
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSAAKLGKFLKEKHKKKVLVVSADIYRPAAIKQLEALAEGVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  SE+      +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++        
Sbjct: 157 IDFFPSEVKEKPLDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIRQV-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE    LEPF     ++ I G  D
Sbjct: 268 KPIKFLGVGEKTEALEPFHPDRVASRILGMGD 299


>gi|304384767|ref|ZP_07367113.1| signal recognition particle protein [Pediococcus acidilactici DSM
           20284]
 gi|304328961|gb|EFL96181.1| signal recognition particle protein [Pediococcus acidilactici DSM
           20284]
          Length = 487

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 155/312 (49%), Gaps = 23/312 (7%)

Query: 17  LTKGFASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           L+  F   + +L++   ++     ++   L D +RE +   L+ +D+   V +K V+ + 
Sbjct: 9   LSMAFEGLTERLQKTFNNLRKKGKVTEADLRDTMRE-IRLALLEADVNFTVVKKFVKTVR 67

Query: 72  TKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +    D+       Q+++  V++ + KM+   + P N      P VI++ G+ G GKTT
Sbjct: 68  EQALGSDILEGLNPAQQIVKLVNDELVKMMGTEASPLNQ-APKIPTVIMMAGLQGAGKTT 126

Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183
             GKL+ K+ ++   + +L A D +R AAIDQL    ++   D    + G+D +   +  
Sbjct: 127 TTGKLALKLKNEKKARPLLIAADVYRPAAIDQLVQVGEQI--DVPVYQEGTDVSPVEIVR 184

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
              +QA   K D + IDTAGRL  +  LM  +  +       D   P  +L V+DA TGQ
Sbjct: 185 HGLEQAAENKNDYVFIDTAGRLQIDEKLMQELADI------KDLAHPDEILLVVDAMTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+   E F+     TG+I+TK+DG  RGG  + I      P+ F+G GE + DL+ F  
Sbjct: 239 NAVNTAEGFNDKLDVTGVILTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMEDLDVFHP 298

Query: 304 KDFSAVITGCLD 315
              ++ I G  D
Sbjct: 299 DRMASRILGMGD 310


>gi|148240067|ref|YP_001225454.1| Signal recognition particle protein [Synechococcus sp. WH 7803]
 gi|147848606|emb|CAK24157.1| Signal recognition particle protein [Synechococcus sp. WH 7803]
          Length = 523

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 143/280 (51%), Gaps = 16/280 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100
           +G  +++   L+ +D+ + V +  V ++  K    DV V+ V  D    +++H+ L+ + 
Sbjct: 57  EGALKDVRRALLEADVSLPVVKAFVADVREKAVGSDV-VRGVSPDQKFIQVVHEQLVEVM 115

Query: 101 KPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              N   +     P V+L+ G+ G GKTT   KL   + D G + ++   D +R AAI+Q
Sbjct: 116 GGGNAPLAQAETAPTVVLMAGLQGAGKTTATAKLGLHLKDQGRRALMVGADVYRPAAIEQ 175

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLIIDTAGRLHNNSILMAGI 215
           LK    +   +     +G+DA   A  A   A+AK+   D L++DTAGRL  +S +M   
Sbjct: 176 LKTLGGQIGVEVFS--LGADAKPEAIAAAGLAKAKEEGFDTLLVDTAGRLQIDSEMME-- 231

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +M+R+   +    P  VL V+D+  GQ A      FH   G TG ++TK+DG +RGG  
Sbjct: 232 -EMVRIRTAVQ---PDEVLLVVDSMIGQEAAELTRAFHEQVGITGAVLTKLDGDSRGGAA 287

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 288 LSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 327


>gi|51595183|ref|YP_069374.1| signal recognition particle protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186894198|ref|YP_001871310.1| signal recognition particle protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|51588465|emb|CAH20073.1| 4.5S-RNP protein (ffh), GTP binding export factor, part of signal
           recognition particle with 4.5S RNA [Yersinia
           pseudotuberculosis IP 32953]
 gi|186697224|gb|ACC87853.1| signal recognition particle protein [Yersinia pseudotuberculosis
           PB1/+]
          Length = 453

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +   K V++ + D +R AAI QL+  A    
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S+       +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++   +K   
Sbjct: 157 IDFFPSDAQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I      P+
Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLGVGE  + LEPF     ++ I G  D
Sbjct: 271 KFLGVGEKSDALEPFHPDRIASRILGMGD 299


>gi|302038373|ref|YP_003798695.1| signal recognition particle protein [Candidatus Nitrospira
           defluvii]
 gi|300606437|emb|CBK42770.1| Signal recognition particle protein [Candidatus Nitrospira
           defluvii]
          Length = 449

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 113/212 (53%), Gaps = 10/212 (4%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P +I++VG+ G GKTT  GKL++     G +V+L A D  R AA DQL         
Sbjct: 97  SRPPTIIMMVGLQGAGKTTTSGKLARLFKGQGKRVLLVAADPRRPAAGDQLASLGRDLGI 156

Query: 168 DF----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           D           +D   +     ++ Q +  D++++DT GRLH +  LMA   +++ V +
Sbjct: 157 DVHRFDQIDASRADVVRICQRGVERGQEQGYDLIVLDTGGRLHVDDELMA---ELVAVKQ 213

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            ++PH    VL V DA TGQ+A+     F    G TG+I+TK++G ARGG ++ I     
Sbjct: 214 AVNPH---EVLLVADAMTGQDAVNMAGQFDQQVGLTGVILTKVEGDARGGAVLSIRAVTG 270

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLG+GE ++ LEPF     ++ I G  D
Sbjct: 271 KPIKFLGMGEKLDALEPFHPDRMASRILGMGD 302


>gi|152976211|ref|YP_001375728.1| signal recognition particle protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024963|gb|ABS22733.1| signal recognition particle protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 449

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+ +  D ++IDTAGRLH +  LM  + K+  V      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHHDYVLIDTAGRLHIDEELMDELAKVKEVAN---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAKSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ +EPF  +  ++ I G  D
Sbjct: 273 FAGMGEKLDAIEPFHPERMASRILGMGD 300


>gi|238791382|ref|ZP_04635021.1| Signal recognition particle protein [Yersinia intermedia ATCC
           29909]
 gi|238729515|gb|EEQ21030.1| Signal recognition particle protein [Yersinia intermedia ATCC
           29909]
          Length = 453

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +   K V++ + D +R AAI QL+  A    
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVD 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++        
Sbjct: 157 IDFFPSDVQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQI-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 268 KPIKFLGVGEKSDALEPFHPDRVASRILGMGD 299


>gi|327479752|gb|AEA83062.1| signal recognition particle protein Ffh [Pseudomonas stutzeri DSM
           4166]
          Length = 458

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 153/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNRVKERAVG 61

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLS 132
            +VS          +++   L  L    N D +     P V+L+ G+ G GKTT +GKL+
Sbjct: 62  TEVSKSLTPGQAFVKIVRAELEELMGAANEDLALNVTPPAVVLMAGLQGAGKTTTVGKLA 121

Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + + +   K V++ + D +R AAI QL+  A      F  S+       +A  A ++A+ 
Sbjct: 122 RFLKERKKKTVLVVSADVYRPAAIKQLETLAGEVGVTFFPSDTSQKPVDIAQAAIREAKL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +DV+++DTAGRL  ++ +MA I  +   +K      P   L V+DA TGQ+A      
Sbjct: 182 KFIDVVLVDTAGRLAIDAEMMAEIQAVHAAIK------PAETLFVVDAMTGQDAANTARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG ARGG  + +      P+ FLG+GE  + LEPF     ++ I 
Sbjct: 236 FGDALPLTGVVLTKVDGDARGGAALSVRHVTGKPIKFLGMGEKSDALEPFHPDRIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|153813988|ref|ZP_01966656.1| hypothetical protein RUMTOR_00195 [Ruminococcus torques ATCC 27756]
 gi|317501511|ref|ZP_07959709.1| signal recognition particle protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088014|ref|ZP_08336936.1| signal recognition particle protein [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848384|gb|EDK25302.1| hypothetical protein RUMTOR_00195 [Ruminococcus torques ATCC 27756]
 gi|316897140|gb|EFV19213.1| signal recognition particle protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409162|gb|EGG88617.1| signal recognition particle protein [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 453

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 155/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++ S  RL +D V+  L ++   L+ +D+   V +K V+++  +   
Sbjct: 3   FDSLTEKLQNVFRNLRSKGRLTEDDVKAALREVKMALLEADVNFKVVKKFVKDVQERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +            VI++ G+ G GKTT   KL
Sbjct: 63  QDVMNGLNPGQMVIKIVNEELVKLMGSETTEIKLQPGSAITVIMMAGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G K +L A D +R AAI QL+I  ++   +       +  A +A  A   AQ 
Sbjct: 123 AGKYKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSMGDKNRPADIAKAALAHAQK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DTAGRLH +  +MA + ++   ++       H  + V+DA TGQ+A+   E 
Sbjct: 183 NGNNIVILDTAGRLHIDEDMMAELQQIKEAVE------VHQTILVVDAMTGQDAVNVAES 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FHNKIGIDGVIVTKLDGDTRGGAALSIKAVTGRPILYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|114771306|ref|ZP_01448726.1| Signal recognition particle protein ffh [alpha proteobacterium
           HTCC2255]
 gi|114548231|gb|EAU51118.1| Signal recognition particle protein ffh [alpha proteobacterium
           HTCC2255]
          Length = 500

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 158/309 (51%), Gaps = 23/309 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL--DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
           FA+ S +L  G+ D ++++    DD V   L ++   L+ +D+ + +A+  ++ +  K  
Sbjct: 2   FANLSDRL-SGVFDKLNNKATLSDDDVSIALREVRVALLEADVSLPIARDFIKAIQAKAS 60

Query: 76  AKDVS--------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            + V+        V ++++D  EL+H +             + P  IL+VG+ G GKTT 
Sbjct: 61  GQAVTKSVKPGQQVVKIVHD--ELVHFLAGEDKNASELKIDNPPAPILMVGLQGSGKTTT 118

Query: 128 IGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL+K++ +    KV++A+ DT R AA++QL I   +   D +    G  A  +A  A 
Sbjct: 119 TAKLAKRLKEKNNKKVLIASLDTNRPAAMEQLAILGTQIGVDSLPIVKGESAVKIAKRAK 178

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA     DV I+DTAGRL  +  LM+ +  +  + K      P   + V+D  TGQ+A+
Sbjct: 179 QQAMLGGYDVFILDTAGRLSIDEELMSEVEAVRNIAK------PRETMLVVDGLTGQDAV 232

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F    G +G+I+T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  
Sbjct: 233 HTAQNFDDRIGISGVILTRMDGDGRGGAALSMRAVTGRPIKFVGLGEKVDALEEFHPERV 292

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 293 AGRILGMGD 301


>gi|83771777|dbj|BAE61907.1| unnamed protein product [Aspergillus oryzae]
          Length = 607

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 140/283 (49%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +ED L++ ++    A ++ +    EL+ K+     SV   L    E  + K+L P S   
Sbjct: 318 MEDHLLKKNVAREAAVRLCDGVQRELVGKKTGNFQSVDAALRQAMESSLRKILTPTSSLD 377

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P +   S RP+VI +VGVNGVGK+T +GK+   +     +V++AA DTFR
Sbjct: 378 LLREIDTVTSPTSKQQSPRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRVLIAACDTFR 437

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A +   A K DV++ID
Sbjct: 438 SGAVEQLRVHA-RNLKELSARENVGQVELYEKGYGKDAANVAKDAVEYGAANKFDVVLID 496

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +  K      P  +  V +A  G +++ Q   F+   GT  
Sbjct: 497 TAGRRHNDQRLMSSLEKFGKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 550

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 551 NLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 593


>gi|95930754|ref|ZP_01313487.1| signal recognition particle protein [Desulfuromonas acetoxidans DSM
           684]
 gi|95133234|gb|EAT14900.1| signal recognition particle protein [Desulfuromonas acetoxidans DSM
           684]
          Length = 451

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 146/286 (51%), Gaps = 14/286 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           ++   +D+ +RE +  +L+ +D+   V +  V  +  +    DV       Q+V+  V +
Sbjct: 22  LTESHVDEAMRE-VRLVLLEADVNFKVVKDFVAAVRERAVGTDVLKSLTPAQQVIKIVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            + + LM        D + +P V I++ G+ G GKTT  GKL+ ++       +L   D 
Sbjct: 81  ELGR-LMGEGDNAALDLAAQPPVPIMLCGLQGAGKTTTCGKLALQLRRDKRDPLLVPADI 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK    +       ++ G D  ++  +A + A+    D LI+DTAGRLH +S
Sbjct: 140 YRPAAIEQLKTLGRQLGVAVFDTQPGDDPVSICEQAREFARLNGHDTLILDTAGRLHIDS 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  +G++   L+      P  +L V DA TGQ+A+  V+ F      TG+++TK+DG 
Sbjct: 200 ELMDELGRINDALQ------PREILFVADAMTGQDAVNVVKSFDEKLDITGVVLTKLDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ARGG  + +      P+ F+G+GE ++ LE F     +  I G  D
Sbjct: 254 ARGGAALSVRAVTGKPIKFVGMGEKMDALEVFHPDRMAQRILGMGD 299


>gi|317148977|ref|XP_001823040.2| signal sequence receptor alpha subunit [Aspergillus oryzae RIB40]
          Length = 646

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 140/283 (49%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +ED L++ ++    A ++ +    EL+ K+     SV   L    E  + K+L P S   
Sbjct: 357 MEDHLLKKNVAREAAVRLCDGVQRELVGKKTGNFQSVDAALRQAMESSLRKILTPTSSLD 416

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P +   S RP+VI +VGVNGVGK+T +GK+   +     +V++AA DTFR
Sbjct: 417 LLREIDTVTSPTSKQQSPRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRVLIAACDTFR 476

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A +   A K DV++ID
Sbjct: 477 SGAVEQLRVHA-RNLKELSARENVGQVELYEKGYGKDAANVAKDAVEYGAANKFDVVLID 535

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +  K      P  +  V +A  G +++ Q   F+   GT  
Sbjct: 536 TAGRRHNDQRLMSSLEKFGKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 589

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 590 NLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 632


>gi|288559422|ref|YP_003422908.1| signal recognition particle SRP54 protein [Methanobrevibacter
           ruminantium M1]
 gi|288542132|gb|ADC46016.1| signal recognition particle SRP54 protein [Methanobrevibacter
           ruminantium M1]
          Length = 444

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 13/275 (4%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIHKMLMPL--S 100
           V ++++  LI+SD+ + +  K+  + + KR  ++   + +     V  +I++ ++ L  S
Sbjct: 30  VVKDIQRALIQSDVNIQLVLKL-SKTIEKRALEEEPPKGITPREHVITIIYEEMVNLLGS 88

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           +      + +P  IL +G+ G GKTT IGKL + +   G    +   DT+R AA +QLK 
Sbjct: 89  EAQELKITEKPFKILFLGLQGSGKTTTIGKLCRYLQRKGFSPAVVCTDTWRPAAYEQLKQ 148

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
             +             DA  LA +  K  + +K+  +I DTAGR  N   L+  + K+ +
Sbjct: 149 LTEEMQIQLYGDPDNKDALDLAEKGLKHFKNQKI--IIFDTAGRHKNEEDLIEEMNKLDK 206

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           ++       P   + V+DAT GQ A  Q + F        +I++K+DGTA+GGG +  V 
Sbjct: 207 IIN------PSESMLVIDATIGQQAGEQAKAFSQATDIGSIIISKLDGTAKGGGALSAVA 260

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+ F+G GEGI+D E F  + F + + G  D
Sbjct: 261 ETGAPIKFIGTGEGIDDFEAFDPERFISRLLGMGD 295


>gi|22124802|ref|NP_668225.1| signal recognition particle protein [Yersinia pestis KIM 10]
 gi|45440246|ref|NP_991785.1| signal recognition particle protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808839|ref|YP_652755.1| signal recognition particle protein [Yersinia pestis Antiqua]
 gi|108810966|ref|YP_646733.1| signal recognition particle protein [Yersinia pestis Nepal516]
 gi|145600319|ref|YP_001164395.1| signal recognition particle protein [Yersinia pestis Pestoides F]
 gi|153949054|ref|YP_001402187.1| signal recognition particle protein [Yersinia pseudotuberculosis IP
           31758]
 gi|153997658|ref|ZP_02022758.1| signal recognition particle protein [Yersinia pestis CA88-4125]
 gi|162421754|ref|YP_001605456.1| signal recognition particle protein [Yersinia pestis Angola]
 gi|165925805|ref|ZP_02221637.1| signal recognition particle protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936674|ref|ZP_02225241.1| signal recognition particle protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010102|ref|ZP_02231000.1| signal recognition particle protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212941|ref|ZP_02238976.1| signal recognition particle protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399424|ref|ZP_02304948.1| signal recognition particle protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421480|ref|ZP_02313233.1| signal recognition particle protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423282|ref|ZP_02315035.1| signal recognition particle protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|218930317|ref|YP_002348192.1| signal recognition particle protein [Yersinia pestis CO92]
 gi|229838915|ref|ZP_04459074.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896398|ref|ZP_04511566.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis Pestoides A]
 gi|229899481|ref|ZP_04514623.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229901181|ref|ZP_04516304.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis Nepal516]
 gi|294505009|ref|YP_003569071.1| signal recognition particle protein [Yersinia pestis Z176003]
 gi|21957627|gb|AAM84476.1|AE013692_5 GTP-binding export factor [Yersinia pestis KIM 10]
 gi|45435102|gb|AAS60662.1| signal recognition particle protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774614|gb|ABG17133.1| signal recognition particle subunit FFH/SRP54 (srp54) [Yersinia
           pestis Nepal516]
 gi|108780752|gb|ABG14810.1| signal recognition particle subunit FFH/SRP54 (srp54) [Yersinia
           pestis Antiqua]
 gi|115348928|emb|CAL21887.1| signal recognition particle protein [Yersinia pestis CO92]
 gi|145212015|gb|ABP41422.1| signal recognition particle subunit FFH/SRP54 (srp54) [Yersinia
           pestis Pestoides F]
 gi|149289295|gb|EDM39375.1| signal recognition particle protein [Yersinia pestis CA88-4125]
 gi|152960549|gb|ABS48010.1| signal recognition particle protein [Yersinia pseudotuberculosis IP
           31758]
 gi|162354569|gb|ABX88517.1| signal recognition particle protein [Yersinia pestis Angola]
 gi|165915323|gb|EDR33933.1| signal recognition particle protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922417|gb|EDR39594.1| signal recognition particle protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991009|gb|EDR43310.1| signal recognition particle protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205728|gb|EDR50208.1| signal recognition particle protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960399|gb|EDR56420.1| signal recognition particle protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051928|gb|EDR63336.1| signal recognition particle protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057452|gb|EDR67198.1| signal recognition particle protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681906|gb|EEO77999.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis Nepal516]
 gi|229687478|gb|EEO79552.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695281|gb|EEO85328.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700472|gb|EEO88503.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis Pestoides A]
 gi|262363072|gb|ACY59793.1| signal recognition particle protein [Yersinia pestis D106004]
 gi|262366998|gb|ACY63555.1| signal recognition particle protein [Yersinia pestis D182038]
 gi|294355468|gb|ADE65809.1| signal recognition particle protein [Yersinia pestis Z176003]
 gi|320016490|gb|ADW00062.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 453

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +   K V++ + D +R AAI QL+  A    
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S+       +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++   +K   
Sbjct: 157 IDFFPSDAQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I      P+
Sbjct: 214 ---PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLGVGE  + LEPF     ++ I G  D
Sbjct: 271 KFLGVGEKSDALEPFHPDRIASRILGMGD 299


>gi|57239270|ref|YP_180406.1| Signal recognition particle protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579233|ref|YP_197445.1| Signal recognition particle protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161349|emb|CAH58272.1| signal recognition particle protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417859|emb|CAI27063.1| Signal recognition particle protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 450

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 149/272 (54%), Gaps = 13/272 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELI 92
           +ISS   D  V EE++  L+ +D+ ++V +  + ++   R   + +++ VL    V + I
Sbjct: 21  VISSEDFD-SVMEEVKVALLEADVALSVVKSFINDI-KDRIVGETTIKGVLPTQMVIKKI 78

Query: 93  HKMLMPL--SKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
              L+ +   +  + D S +P  VI++VG+ GVGKTT   KL+ ++ +   +V++A+ D 
Sbjct: 79  QDCLIEILGVEKRDLDLSAKPFAVIMMVGLQGVGKTTTTAKLALRLKNKKKEVLMASLDL 138

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AA  QL+I   +     +          +A  A   A+    +VLI DTAGRLH + 
Sbjct: 139 YRPAAQTQLEILGKQIDVKTLPIIEKQQPVDIAKRAITVAKESNCNVLIFDTAGRLHVDE 198

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
           I+M  + K I+ +      +P  V+ V DA  GQ+A+  V+ F +  G TG+I+T++DG 
Sbjct: 199 IMMEEL-KAIKAI-----TSPSEVILVADAMIGQDAVNVVKSFDSNIGITGIILTRIDGD 252

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +RGG  + + ++   P+ FL  GE ++DL+ F
Sbjct: 253 SRGGAALSMKMSTGTPIKFLATGEKLSDLDDF 284


>gi|157831065|pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
           Protein Ffh From Thermus Aquaticus
          Length = 294

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 142/307 (46%), Gaps = 28/307 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + V +  VE +  +   
Sbjct: 1   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 60

Query: 77  KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           K V       + +L  V E + + L     +P+ K  N  F        +VG+ G GKTT
Sbjct: 61  KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 112

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+      G + +L A DT R AA +QL++  ++     +    G    ++     
Sbjct: 113 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 172

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL
Sbjct: 173 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 226

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  
Sbjct: 227 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 286

Query: 307 SAVITGC 313
           +  I G 
Sbjct: 287 AGRILGM 293


>gi|225551839|ref|ZP_03772782.1| signal recognition particle protein [Borrelia sp. SV1]
 gi|225371634|gb|EEH01061.1| signal recognition particle protein [Borrelia sp. SV1]
          Length = 444

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 140/276 (50%), Gaps = 15/276 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-------KMLMPL 99
           E +++ L+ +D+ + V ++ +  ++ +  +K V V R +   S+ I        K L   
Sbjct: 32  EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           S   +   +++   IL++G+ G GKTT   KLS K+     KV+L A DTFR+AA++QLK
Sbjct: 90  SYGLSLHPANKQSYILMLGLQGSGKTTTCAKLSLKLKKENRKVLLVAADTFRAAAVEQLK 149

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I   +        E   D   +   + K A++   D +I+DT GRL   S+L+  I K+ 
Sbjct: 150 ILGGQVGVPVFSIEGEKDPIKIVKASMKFAESNFFDSVIVDTRGRLEIESLLVEEIKKIK 209

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            +L+      P   + V+D+  GQ A+   + F+   G TG I +K D   RGG ++   
Sbjct: 210 GILR------PAETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +P+ F+GVGE I DL+ F  +  ++ I G  D
Sbjct: 264 SICAVPIKFIGVGEKIEDLDSFYPERIASRILGMGD 299


>gi|152997772|ref|YP_001342607.1| signal recognition particle protein [Marinomonas sp. MWYL1]
 gi|150838696|gb|ABR72672.1| signal recognition particle protein [Marinomonas sp. MWYL1]
          Length = 460

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 150/308 (48%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  I    +L +D ++E L ++   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDNLSNRLTSSLDRIRGRAKLTEDNIQEVLREVRMALLEADVALPVVKDFIAAVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  L  V + +  ++   +   N   + RP VIL+ G+ G GKTT   KL
Sbjct: 62  TEVSKSLSPGQVFLKIVKQELENVMGQANDGLNLR-AARPAVILLAGLQGAGKTTSAAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K V + + D +R AAI QL+  A     DF+ S++      +   A   A+
Sbjct: 121 AKYLKEREKKSVSVVSADVYRPAAIKQLETLAGEVGVDFIPSDLSQKPIDIVNNAIDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
               DVLI+DTAGRL  +  +MA I  +         HA   P   L V+DA TGQ+A  
Sbjct: 181 KAHKDVLIVDTAGRLSIDEDMMAEIKAL---------HAAVNPIETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F  V   TG+I+TK DG ARGG  + +      P+ FLGVGE  + LEPF     +
Sbjct: 232 TAKAFGDVLPLTGVILTKTDGDARGGAALSVRHITGKPIKFLGVGEKTSALEPFHPDRLA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|119467570|ref|XP_001257591.1| signal sequence receptor alpha subunit, putative [Neosartorya
           fischeri NRRL 181]
 gi|119405743|gb|EAW15694.1| signal sequence receptor alpha subunit, putative [Neosartorya
           fischeri NRRL 181]
          Length = 649

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 141/282 (50%), Gaps = 38/282 (13%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +ED L++ ++    A ++ E    EL+ K+     SV   L    E  + K+L P S   
Sbjct: 360 MEDHLLKKNVAREAAVRLCEGVQRELVGKKTGNFQSVDAALRSAMESSLRKILTPTSSLD 419

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P +   + RP+VI +VGVNGVGK+T +GK+   +     +V++AA DTFR
Sbjct: 420 LLREIDAVRSPTSKGQAPRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRVLIAACDTFR 479

Query: 152 SAAIDQLKIWA---DRTSADFVCSEI-------GSDAAALAYEAFKQAQAKKVDVLIIDT 201
           S A++QL++ A      SA     E+       G DAA +A +A +   A + DV++IDT
Sbjct: 480 SGAVEQLRVHARNLKELSARENAGEVELYEKGYGKDAANVAKDAVEYGAANQFDVVLIDT 539

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT--- 258
           AGR HN+  LM+ + K  +  K      P  +  V +A  G +++ Q   F+   GT   
Sbjct: 540 AGRRHNDQRLMSSLEKFAKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRN 593

Query: 259 -TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
             G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 594 LDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 635


>gi|238494260|ref|XP_002378366.1| signal sequence receptor alpha subunit, putative [Aspergillus
           flavus NRRL3357]
 gi|220695016|gb|EED51359.1| signal sequence receptor alpha subunit, putative [Aspergillus
           flavus NRRL3357]
          Length = 646

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 140/283 (49%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +ED L++ ++    A ++ +    EL+ K+     SV   L    E  + K+L P S   
Sbjct: 357 MEDHLLKKNVAREAAVRLCDGVQRELVGKKTGNFQSVDAALRQAMESSLRKILTPTSSLD 416

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P +   S RP+VI +VGVNGVGK+T +GK+   +     +V++AA DTFR
Sbjct: 417 LLREIDTVTSPTSKQQSPRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRVLIAACDTFR 476

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A +   A K DV++ID
Sbjct: 477 SGAVEQLRVHA-RNLKELSARENVGQVELYEKGYGKDAANVAKDAVEYGAANKFDVVLID 535

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +  K      P  +  V +A  G +++ Q   F+   GT  
Sbjct: 536 TAGRRHNDQRLMSSLEKFGKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 589

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 590 NLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 632


>gi|157835378|pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
           Protein Ffh From Thermus Aquaticus
          Length = 293

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 142/307 (46%), Gaps = 28/307 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + V +  VE +  +   
Sbjct: 1   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 60

Query: 77  KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           K V       + +L  V E + + L     +P+ K  N  F        +VG+ G GKTT
Sbjct: 61  KQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWF--------LVGLQGSGKTT 112

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+      G + +L A DT R AA +QL++  ++     +    G    ++     
Sbjct: 113 TAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 172

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL
Sbjct: 173 EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEAL 226

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  
Sbjct: 227 SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERL 286

Query: 307 SAVITGC 313
           +  I G 
Sbjct: 287 AGRILGM 293


>gi|222054584|ref|YP_002536946.1| signal recognition particle protein [Geobacter sp. FRC-32]
 gi|221563873|gb|ACM19845.1| signal recognition particle protein [Geobacter sp. FRC-32]
          Length = 449

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 143/286 (50%), Gaps = 22/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEE--------LLTKRYAKDVSVQRVLYDVSE 90
           +D V+E L ++   L+ +D+   V +  +E         L+ +  +    V ++++D  E
Sbjct: 24  EDNVKEALREVRLALLEADVNFKVVKDFIERVREKAVGTLVLQSLSPGQQVVKIVHD--E 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           L+   LM   +  + D + +P V I++VG+ G GKTT  GKL+K +     K +L   D 
Sbjct: 82  LVA--LMGGGEDNSLDLAAKPPVSIMMVGLQGAGKTTSCGKLAKLLKSQRRKPLLVPADI 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLKI   + S +   S+       +  +A K AQ    D +I DTAGR   + 
Sbjct: 140 YRPAAIEQLKILGRQLSIEVFDSQADQKPVDICSKALKYAQLSGFDTVIFDTAGRHQIDD 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM        +++  +   P  +L V DA TGQ A+     F    G TG+++TK+DG 
Sbjct: 200 YLMD------ELVQIREAAEPREILFVADAMTGQEAVNVAAGFDERLGITGVVLTKLDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GG  + I      PV F+G+GE ++ LE F A    + I G  D
Sbjct: 254 AKGGAALSIKAVTGKPVKFVGLGEKLDALEVFHADRLVSRILGMGD 299


>gi|237830449|ref|XP_002364522.1| signal recognition particle 54 kda protein, putative [Toxoplasma
           gondii ME49]
 gi|211962186|gb|EEA97381.1| signal recognition particle 54 kda protein, putative [Toxoplasma
           gondii ME49]
 gi|221507395|gb|EEE32999.1| signal recognition particle 54 kda protein, putative [Toxoplasma
           gondii VEG]
          Length = 582

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 126/250 (50%), Gaps = 10/250 (4%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           G   ++    E+ T+  A  V+ ++++    +SE++  ML P  +P+        +VI+ 
Sbjct: 121 GTGASKDSFREINTRAAAVGVNSRKIIQKCVISEIV-AMLTPARQPY-VPRKGATNVIMF 178

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VG+ G GKTT   K +      G +V L   DTFR+ A DQLK  A +    F  S   +
Sbjct: 179 VGLQGSGKTTTCTKYAHYYQRKGWRVALVCADTFRAGAFDQLKQNATKVRIPFYGSYTEA 238

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D   +A E  +Q + +K D++I+DT+GR    + L     +M +V + +D   P  V+ V
Sbjct: 239 DPVKIAEEGVEQFRREKYDMIIVDTSGRHKQEAAL---FDEMKQVAEAVD---PDDVVFV 292

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +D+  GQ    Q + F        +I+TK+DG A+GGG +  V     P+ FLG GE  +
Sbjct: 293 MDSHIGQACFDQAQAFSDSVDVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFD 352

Query: 297 DLEPFVAKDF 306
           D E F A  F
Sbjct: 353 DFEAFEANSF 362


>gi|23295846|gb|AAN12396.1| signal recognition particle 54 kDa [Trypanosoma brucei]
          Length = 487

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 139/282 (49%), Gaps = 15/282 (5%)

Query: 42  DDGVRE---ELEDLLIRSDIGV----AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIH 93
           +D V+E   E+   L+++D+ V     + Q +  E+     A  ++ +++L   V   I 
Sbjct: 25  EDDVKEFXNEVARALLQADVNVKTVKELQQNVRAEVAITAEAAGLNKRKMLQTAVFNGIK 84

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           KML P  KPF      +  +++ VG+ G GKTT   K +      GLK  L   DTFR+ 
Sbjct: 85  KMLDPGVKPF-IPAKGKTSIVMFVGLQGSGKTTSCTKYAAYFQRKGLKTGLVCADTFRAG 143

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQL+  A +    F  S   +D   +A E   + + +K D++I+DT+GR    S L  
Sbjct: 144 AYDQLRQNATKAKVRFYGSLTEADPVIIAKEGVLELKKEKYDLIIVDTSGRHKQESALFE 203

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++ + +K      P+ ++ V+ AT GQ    Q   F        +I+TK+DG A+GG
Sbjct: 204 EMKQVQQAVK------PNDIVFVMSATDGQGIEEQARQFKEKVPIGSVIVTKLDGQAKGG 257

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +  V   K P+ F+G GE  +D E F  + F + + G  D
Sbjct: 258 GALAAVAMTKSPIVFIGTGEHFDDFELFQPESFVSRMLGMGD 299


>gi|227827525|ref|YP_002829305.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Sulfolobus islandicus M.14.25]
 gi|229584728|ref|YP_002843230.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus
           islandicus M.16.27]
 gi|238619682|ref|YP_002914508.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus
           islandicus M.16.4]
 gi|259511383|sp|C3N5B0|SRP54_SULIA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|259511384|sp|C4KGX6|SRP54_SULIK RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|259511386|sp|C3MYM8|SRP54_SULIM RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|227459321|gb|ACP38007.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Sulfolobus islandicus M.14.25]
 gi|228019778|gb|ACP55185.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus
           islandicus M.16.27]
 gi|238380752|gb|ACR41840.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus
           islandicus M.16.4]
 gi|323474576|gb|ADX85182.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Sulfolobus islandicus REY15A]
 gi|323477308|gb|ADX82546.1| GTP-binding signal recognition particle SRP54, G-domain [Sulfolobus
           islandicus HVE10/4]
          Length = 447

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 140/279 (50%), Gaps = 20/279 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---S 100
           +EL+  LI SD+ V +   +   ++E L K     V ++R  + +S +++  L  L    
Sbjct: 28  KELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSV-LERKEWFIS-IVYDELSKLFGGD 85

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           K  N + +  P +I++VGV G GKTT  GKL+      G KV L A D +R AA DQL  
Sbjct: 86  KEPNVNPTKLPFIIMLVGVQGSGKTTTSGKLAYFYKRRGYKVGLVAADVYRPAAYDQLLQ 145

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
             ++            +A  +A +        K+D++I+DTAGR         G G+  +
Sbjct: 146 LGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMDIIIVDTAGR--------HGYGEETK 197

Query: 221 VLKRL----DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           +L+ +    +   P  V+ V+DA+ GQ A      FH  +    +I+TKMDGTA+GGG +
Sbjct: 198 LLEEMKEIYEALKPDDVILVIDASIGQKAYDLASRFHQASPIGSIIITKMDGTAKGGGAL 257

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             V      + F+G GE I++LE F AK + + I G  D
Sbjct: 258 SAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGD 296


>gi|255037144|ref|YP_003087765.1| signal recognition particle protein [Dyadobacter fermentans DSM
           18053]
 gi|254949900|gb|ACT94600.1| signal recognition particle protein [Dyadobacter fermentans DSM
           18053]
          Length = 440

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 153/305 (50%), Gaps = 20/305 (6%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           KL   F   +LK K+ I+DI  +        +E+   L+ +D+   VA++I + +  K  
Sbjct: 8   KLNNAF--RTLKGKDRISDINVA-----ATTKEVRKALVDADVNFKVAKEITDRIREKAI 60

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + + +     Q  +  V E + +++   ++  N      P VIL+ G+ G GKTT  GK
Sbjct: 61  DRKILISVEPGQMFVKIVQEELTELMGGNAEGIN--IKGDPAVILIAGLQGSGKTTFSGK 118

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G +V+L A D +R AAIDQLK+  ++   +        +A ++A  A   A+
Sbjct: 119 LASLLKKQGRQVLLTACDVYRPAAIDQLKVLGEQIGVEVYSEPENKNAVSIAQNAVSHAK 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
                ++I+DTAGRL  + ++M  +  +   +K      P  +L V+D+ TGQ+A+   +
Sbjct: 179 KSGKKIVIVDTAGRLAVDEVMMKEVEDIKTSVK------PSEILFVVDSMTGQDAVNTAK 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG ARGG  + I    + P+ ++  GE +  L+ F     ++ I
Sbjct: 233 TFNERLDFDGVVLTKLDGDARGGAALSIRQVVEKPIKYISTGEKMEALDSFYPDRMASRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|84501330|ref|ZP_00999535.1| signal recognition particle protein [Oceanicola batsensis HTCC2597]
 gi|84390621|gb|EAQ03109.1| signal recognition particle protein [Oceanicola batsensis HTCC2597]
          Length = 504

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 147/287 (51%), Gaps = 21/287 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSE 90
           D+ V+  L ++   L+ +D+ + VA+  V+ +  K   + V+        V ++++D  E
Sbjct: 24  DEDVKTALREVRVALLEADVSLPVARDFVKAVQDKATGQAVTRSITPGQQVVKIVHD--E 81

Query: 91  LIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGD 148
           L+H +   P + P      + P  IL+VG+ G GKTT   KL+K++ +  G +V++A+ D
Sbjct: 82  LVHVLAGDPEADPGKLKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKEKEGKRVLMASLD 141

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             R AA++QL+I   +   D +    G D   +A  A  QA     DV ++DTAGRLH +
Sbjct: 142 VNRPAAMEQLQILGTQIGVDTLPIVKGEDPVQIAKRAKTQASMGGYDVYMLDTAGRLHID 201

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             L+A    +       D   P   L V+D  TGQ+A+     F    G +G+++T+MDG
Sbjct: 202 QELIAQAAAV------RDVANPRETLLVVDGLTGQDAVNVATEFDDKIGVSGVVLTRMDG 255

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             RGG  + +      P+ F+G+GE ++ +E F  +  +  I G  D
Sbjct: 256 DGRGGAALSMRAITGKPIKFVGLGEKMDAIETFEPERIAGRILGMGD 302


>gi|326793984|ref|YP_004311804.1| signal recognition particle protein [Marinomonas mediterranea
           MMB-1]
 gi|326544748|gb|ADZ89968.1| signal recognition particle protein [Marinomonas mediterranea
           MMB-1]
          Length = 466

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/206 (38%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+K + +   K V + + D +R AAI QL+  A     DF
Sbjct: 100 PAVILLAGLQGAGKTTSAGKLAKFLKERQKKSVAVVSADVYRPAAIKQLETLASDVGVDF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           + S+I      +A  A   A+    DVLI+DTAGRL  +  +MA I  +   +       
Sbjct: 160 IPSDISQKPIDIANNAIDVARKAHKDVLIVDTAGRLAIDEDMMAEIKALHGAIN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+D+ TGQ+A    + F  V   TG+I+TK DG ARGG  + +      P+ FL
Sbjct: 214 PVETLFVVDSMTGQDAANTAKAFGDVLPLTGVILTKTDGDARGGAALSVRHITGKPIKFL 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE  + LEPF     ++ I G  D
Sbjct: 274 GVGEKTDALEPFHPDRLASRILGMGD 299


>gi|238019717|ref|ZP_04600143.1| hypothetical protein VEIDISOL_01592 [Veillonella dispar ATCC 17748]
 gi|237863758|gb|EEP65048.1| hypothetical protein VEIDISOL_01592 [Veillonella dispar ATCC 17748]
          Length = 450

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 157/318 (49%), Gaps = 36/318 (11%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F S S KL+E    +     I+   ++  +R+ +   L+ +D+   VA+  V+ +  K  
Sbjct: 3   FDSLSEKLQEAFQSLKGKGKITEEDVNLALRQ-VRTALLEADVNFMVAKDFVKSIKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++V       Q V+  V++ +  +L       M  SKP        P +I++VG+ G G
Sbjct: 62  GEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMISSKP--------PTIIMLVGLQGAG 113

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182
           KTT  GKL+  +   G   ML A D +R AAI QL++   +        E  G++   +A
Sbjct: 114 KTTTAGKLAVYLRKQGKHPMLVAADVYRPAAITQLQVVGKQIDIPVFADETPGANPVDIA 173

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             A +Q+     DV+IIDTAGRL  + +LM  +  +   ++      PH +L V+D+  G
Sbjct: 174 RRAVEQSTHMLKDVVIIDTAGRLAIDEVLMDELSNIKAAVR------PHEILLVVDSMIG 227

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+   + F+   G  G+I+TK+DG ARGG  + I     +P+ F GV E ++  + F 
Sbjct: 228 QDAVTTAQTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFY 287

Query: 303 AKDFSAVITGCLDYGEEK 320
               ++ I   LD G+ K
Sbjct: 288 PDRMASRI---LDLGDFK 302


>gi|255692684|ref|ZP_05416359.1| signal recognition particle protein [Bacteroides finegoldii DSM
           17565]
 gi|260621568|gb|EEX44439.1| signal recognition particle protein [Bacteroides finegoldii DSM
           17565]
          Length = 440

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 140/265 (52%), Gaps = 13/265 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
              +    +   RP VIL+ G+ G GKTT  GKL++ + S    K +L A D +R AAI+
Sbjct: 86  MGGETAEINIDSRPAVILMSGLQGSGKTTFSGKLARMLKSKKNRKPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++ A++      C     +   +A  A ++A+AK  D++I+DTAGRL  +  +M  I 
Sbjct: 146 QLRVLAEQIEVPMYCELDSKNPVEIAQHAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIA 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +   +       P+ +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 206 AIKEAIN------PNEILFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I      P+ F+G GE ++ ++ F
Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQF 284


>gi|119505224|ref|ZP_01627299.1| Signal recognition particle protein [marine gamma proteobacterium
           HTCC2080]
 gi|119458915|gb|EAW40015.1| Signal recognition particle protein [marine gamma proteobacterium
           HTCC2080]
          Length = 460

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 149/307 (48%), Gaps = 31/307 (10%)

Query: 30  EGITDIIS---------SRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77
           EG++D +S         SR  +D +R+ L ++   L+ +D+ + V +   E + T+    
Sbjct: 3   EGLSDRLSASLKSMSGKSRLTEDNIRDTLREVRMALLEADVALEVVKSFTEAVKTRAVGA 62

Query: 78  DVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V+      Q  L  V   + + +   ++    + +  P V++V G+ G GKTT I KL+
Sbjct: 63  EVAQSLTPGQEFLKIVQAELTQTMGSANEALTLN-AQPPAVVMVAGLQGAGKTTSIAKLA 121

Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + + +   K V + + D +R AAI QL+  A    A F  S +     A+   A + A+ 
Sbjct: 122 RYLMEREKKSVAVVSADVYRPAAIKQLETLASEVGARFEPSSVEEKPVAIVNRALENARL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQ 248
              DVL++DTAGRL  +  +MA I ++         HA   P   L V+DA  GQ+A+  
Sbjct: 182 NFTDVLLVDTAGRLAVDDAMMAEIREL---------HAAVNPIETLFVVDAMMGQDAVMT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F      TG+I+TK+D   RGG  + +      P+ FLGVGE  + L+PF     ++
Sbjct: 233 ARAFGETLPLTGVILTKVDADTRGGAALSVRSVTGKPIKFLGVGEKTDALDPFHPDRLAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|270290355|ref|ZP_06196580.1| signal recognition particle protein [Pediococcus acidilactici 7_4]
 gi|270281136|gb|EFA26969.1| signal recognition particle protein [Pediococcus acidilactici 7_4]
          Length = 477

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 145/288 (50%), Gaps = 18/288 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           ++   L D +RE +   L+ +D+   V +K V+ +  +    D+       Q+++  V++
Sbjct: 23  VTEADLRDTMRE-IRLALLEADVNFTVVKKFVKTVREQALGSDILEGLNPAQQIVKLVND 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDT 149
            + KM+   + P N      P VI++ G+ G GKTT  GKL+ K+ ++   + +L A D 
Sbjct: 82  ELVKMMGTEASPLNQ-APKIPTVIMMAGLQGAGKTTTTGKLALKLKNEKKARPLLIAADV 140

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           +R AAIDQL    ++   D    + G+D +   +     +QA   K D + IDTAGRL  
Sbjct: 141 YRPAAIDQLVQVGEQI--DVPVYQEGTDVSPVEIVRHGLEQAAENKNDYVFIDTAGRLQI 198

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  LM  +  +       D   P  +L V+DA TGQNA+   E F+     TG+I+TK+D
Sbjct: 199 DEKLMQELADI------KDLAHPDEILLVVDAMTGQNAVNTAEGFNDKLDVTGVILTKLD 252

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  RGG  + I      P+ F+G GE + DL+ F     ++ I G  D
Sbjct: 253 GDTRGGAALSIRAVTGKPIKFVGQGEKMEDLDVFHPDRMASRILGMGD 300


>gi|167758974|ref|ZP_02431101.1| hypothetical protein CLOSCI_01320 [Clostridium scindens ATCC 35704]
 gi|167663381|gb|EDS07511.1| hypothetical protein CLOSCI_01320 [Clostridium scindens ATCC 35704]
          Length = 449

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 152/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++ S  RL +D V+E L+++   L+ +D+   V +  ++ +  +   
Sbjct: 3   FDSLTEKLQNIFKNLRSKGRLTEDDVKEALKEIKRALLAADVNFKVVKDFIKNVQERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +            VI++ G+ G GKTT   KL
Sbjct: 63  QDVMNGLNPGQMVIKIVNEELVKLMGSETTEIALQPGSAITVIMMAGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G   +L A D +R AAI QL++  ++   +          + +A  A + AQ 
Sbjct: 123 AGKYKVKGKNPLLVACDVYRPAAIKQLQVNGEKQGVEVFAMGESHKPSNIAKAAIEHAQK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
               ++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+   + 
Sbjct: 183 NGNRIVILDTAGRLHIDEDMMAELAEIKEAVN------VHQTILVIDAMTGQDAVNVAKE 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + +      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FNEKIGVDGVIVTKLDGDTRGGAALSVKAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|167037689|ref|YP_001665267.1| signal recognition particle protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116104|ref|YP_004186263.1| signal recognition particle protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|326389503|ref|ZP_08211070.1| signal recognition particle protein [Thermoanaerobacter ethanolicus
           JW 200]
 gi|166856523|gb|ABY94931.1| signal recognition particle protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929195|gb|ADV79880.1| signal recognition particle protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|325994508|gb|EGD52933.1| signal recognition particle protein [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 446

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VI++VG+ G GKTT  GKL+  +   G   +L A D  R AAI QL++     +    
Sbjct: 101 PAVIMMVGLQGSGKTTACGKLANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVF 160

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 +   +A  +   A++   DV+IIDTAGRLH +  LM  +  + + ++      P
Sbjct: 161 TMGDKVNPVDIAKASIDYARSHNSDVIIIDTAGRLHIDEELMEELVNIKKAVQ------P 214

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+DA TGQ+A+     F+     TG+I+TK+DG  RGG  + I    + P+ ++G
Sbjct: 215 DEILLVVDAMTGQDAVNVASSFNERLDITGVILTKLDGDTRGGAALSIKAVTQKPIKYVG 274

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE + DLEPF     ++ I G  D
Sbjct: 275 TGEKLTDLEPFYPDRMASRILGMGD 299


>gi|256822050|ref|YP_003146013.1| signal recognition particle protein [Kangiella koreensis DSM 16069]
 gi|256795589|gb|ACV26245.1| signal recognition particle protein [Kangiella koreensis DSM 16069]
          Length = 466

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 112/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+  +     K VM+A+ D +R AAI QL+  A    A F
Sbjct: 100 PVVILMAGLQGAGKTTSAGKLAHLLQTREKKSVMVASADVYRPAAIKQLETVAGEVGATF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A K+A+ + +DV+IIDTAGRL  +  +M  I  +   ++      
Sbjct: 160 FPSSTDQKPIDIANNAIKEAKKQFIDVVIIDTAGRLAIDEAMMDEIKALHAAIE------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+D+ TGQ+A    + F+     TG+I+TK DG ARGG  + I      P+ F+
Sbjct: 214 PTETLFVVDSMTGQDAANTAKAFNDALPLTGVILTKADGDARGGAALSIRHITGKPIKFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+GE I+ LEPF  +  ++ I G  D
Sbjct: 274 GMGEKIDQLEPFHPERVASRILGMGD 299


>gi|329118039|ref|ZP_08246752.1| signal recognition particle protein [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465927|gb|EGF12199.1| signal recognition particle protein [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 455

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 147/286 (51%), Gaps = 21/286 (7%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           +D ++  L ++   L+ +D+ + V +    K+ E+ L +  +++++ ++    V   +++
Sbjct: 24  EDNIKPALREVRLALLEADVALPVVRDFVAKVKEKALGREISENLTAEQAFITV---VNQ 80

Query: 95  MLMPLSKPFNWDFSHRPHVILVV---GVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDT 149
            L+ L    N   +       VV   G+ G GKTT +GKL++  K  D   K++L + D 
Sbjct: 81  ALVELMGGANSSLNLAAAAPAVVLMAGLQGAGKTTTVGKLARLLKTQDKKKKILLVSTDV 140

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QL++ A++  ADF  S +      +A  A  QA+    DVL++DTAGRL  + 
Sbjct: 141 YRPAAIEQLRLLAEQVQADFFPSNVSQKPVEIARAALAQAKRGFYDVLMVDTAGRLAIDQ 200

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +M  I ++   L       P   L V+DA  GQ+A+   + F+     TG+I+TKMDG 
Sbjct: 201 EMMDEIKELHAALD------PVETLFVVDAMLGQDAVNTAQAFNEALPLTGVILTKMDGD 254

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F G GE  + LE F     ++ I G  D
Sbjct: 255 SRGGAALSVRKITGKPIKFFGTGEKTDGLEAFHPDRIASRILGMGD 300


>gi|119478672|ref|ZP_01618562.1| signal recognition particle protein [marine gamma proteobacterium
           HTCC2143]
 gi|119448398|gb|EAW29650.1| signal recognition particle protein [marine gamma proteobacterium
           HTCC2143]
          Length = 456

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 153/309 (49%), Gaps = 23/309 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  I    RL +D +++ L ++   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FETLTERLSHSLKSITGQARLTEDNIKDTLREVRMALLEADVALPVVKDFIDTVKQRAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q  +  V++ +  M+   ++  N   +  P VIL+ G+ G GKTT + KL
Sbjct: 62  QDVGKSLNPGQMFVKIVNDELETMMGSANESLNLS-TQPPAVILMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K VM+ + D +R AAI QL+  A    A F  S        +   A  +A+
Sbjct: 121 ARFLKEKEKKKVMVVSADVYRPAAIKQLETLATEVEATFFPSSDDQKPIDIVNGAIAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            +  DVLI+DTAGRL  +  +MA I ++         HA   P   L V+DA TGQ+A  
Sbjct: 181 VQFADVLIVDTAGRLAIDEAMMAEIKQL---------HAAINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             ++F+     TG+I+TK D  +RGG  + +      P+ FLGVGE    L+PF     +
Sbjct: 232 TAKVFNDALPLTGVILTKADADSRGGAALSVRQITGKPIKFLGVGEKTTALDPFHPDRIA 291

Query: 308 AVITGCLDY 316
           + I G  D 
Sbjct: 292 SRILGMGDM 300


>gi|291522193|emb|CBK80486.1| signal recognition particle protein [Coprococcus catus GD/7]
          Length = 447

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++ S  RL +  V+  L+++   L+ +D+   V ++ +  +  +   
Sbjct: 3   FESLSDKLQNVFKNLRSKGRLTEADVKASLKEVKMALLEADVNFKVVKQFINSVTERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E +  ++   +     + S+   VI++ G+ G GKTT   K+
Sbjct: 63  QDVMNSLTPGQMVIKIVNEEMVALMGSETTEIKLNNSNELTVIMMAGLQGAGKTTTSAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G K +L A D +R AAI QL++  ++            +   +A  A + A+ 
Sbjct: 123 AGKLKAKGRKPLLVACDVYRPAAIKQLQVNGEKQGVPVFSMGDHQNPVDIAKAAIEHAKN 182

Query: 192 KKVDVLIIDTAGRLHNNSILM---AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
             ++V+I+DTAGRLH +  +M   A I K I+V            + V+DA TGQ+A+  
Sbjct: 183 NDLNVVILDTAGRLHVDETMMEELANIQKAIKV---------DQTIFVVDAMTGQDAVNV 233

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+      G+I+TKMDG  RGG  + I      P+ ++G+GE ++DLE F     ++
Sbjct: 234 AKSFNEQIELDGVILTKMDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMAS 293

Query: 309 VITGCLD 315
            I G  D
Sbjct: 294 RILGMGD 300


>gi|317178547|dbj|BAJ56335.1| signal recognition particle protein [Helicobacter pylori F30]
          Length = 448

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 152/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIANNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++   L       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKETLN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVISKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|169853092|ref|XP_001833227.1| signal recognition particle protein [Coprinopsis cinerea
           okayama7#130]
 gi|116505605|gb|EAU88500.1| signal recognition particle protein [Coprinopsis cinerea
           okayama7#130]
          Length = 574

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 147/286 (51%), Gaps = 23/286 (8%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA--------KDVS-----VQRVLYDVS 89
           D   +E+   L+ SD+ V +   + +++  K  A        K+ S     +Q+ ++D  
Sbjct: 29  DATLKEITAALLESDVNVKLVASLRQKVKAKVKAALDGQGEKKEPSNKKHLIQKAVFD-- 86

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+  ++ P  +P+      R +VI+ VG+ G GKTT   KL+      G K  +   DT
Sbjct: 87  ELVA-LVDPGVEPYK-PVKGRTNVIMAVGLQGNGKTTTCTKLAAYYQKRGFKSAIVCADT 144

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ +    +    +  S   ++  ++A +  ++ + ++ +V+I+DT+GR     
Sbjct: 145 FRAGAFDQTRQSCTKAKIAYFGSYTETNPVSIAQQGVQKFKKERFEVVIVDTSGRHKQER 204

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L    G+MI + + + P    +VL VLDA+ GQ A  Q + F   A    +I+TKMDG 
Sbjct: 205 EL---FGEMIEISEAVKPD--MTVL-VLDASIGQAAEGQAKAFKESADFGAIIVTKMDGH 258

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG I  V   K P+ FLGVGE ++DL+ F  + F + + G  D
Sbjct: 259 AKGGGAISAVAATKTPIIFLGVGEHLHDLDRFSPQPFISKLLGLGD 304


>gi|123441193|ref|YP_001005180.1| signal recognition particle protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088154|emb|CAL10942.1| signal recognition particle protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 453

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +   K V++ + D +R AAI QL+  A    
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S++      +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++        
Sbjct: 157 IDFFPSDVQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQV-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 268 KPIKFLGVGEKSDALEPFHPDRVASRILGMGD 299


>gi|197119794|ref|YP_002140221.1| signal recognition particle protein [Geobacter bemidjiensis Bem]
 gi|197089154|gb|ACH40425.1| signal recognition particle protein [Geobacter bemidjiensis Bem]
          Length = 453

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 148/290 (51%), Gaps = 20/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLY 86
           +++   + D +RE +   L+ +D+   V ++ VE++  +    +V         V ++++
Sbjct: 21  VMTEENVKDALRE-VRLALLEADVNFKVVKEFVEKVRGRAVGTEVLQSLAPGQQVIKIVH 79

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           D  EL+  +LM   +  + D + +P V I++VG+ G GKTT  GKL+K +     K +L 
Sbjct: 80  D--ELV--LLMGGEEDNSLDLAAKPPVAIMLVGLQGAGKTTSCGKLAKFLKAQRKKPLLV 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             D +R AAI+QLK+   +   +   SE       +   A + A     DV+I DTAGR 
Sbjct: 136 PADVYRPAAIEQLKVLGRQLDIEVFGSEATQKPLEICRAAHRYATLNGFDVVIFDTAGRH 195

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             +  LM  + + IR     D  AP  +L V DA TGQ A+     F+   G TG+I+TK
Sbjct: 196 QIDDYLMNEL-EGIR-----DELAPREILFVADAMTGQEAVNVASGFNDRLGITGVILTK 249

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +DG A+GG  + I      PV F+G+GE ++ L+ F A    + I G  D
Sbjct: 250 LDGDAKGGAALSIKAVTGKPVKFVGLGEKLDALDVFHADRLVSRILGMGD 299


>gi|157115970|ref|XP_001652739.1| signal recognition particle 54 kda protein [Aedes aegypti]
 gi|108876679|gb|EAT40904.1| signal recognition particle 54 kda protein [Aedes aegypti]
          Length = 357

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 147/307 (47%), Gaps = 21/307 (6%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-- 72
           RK+T    S S         II+   LD  ++E +   L+ +D+ + + +K+ E + +  
Sbjct: 8   RKITNALHSLSK------ATIINEEVLDSMLKE-ICTALLEADVNIRLVKKLRENVKSVI 60

Query: 73  --KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                A  ++ +R++      EL+ K++ P  KP+      RP+VI+ VG+ G GKTT  
Sbjct: 61  DFDEMAGGLNKRRMIQSAVFKELV-KLVDPGVKPYQ-PVKGRPNVIMFVGLQGSGKTTTC 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +    
Sbjct: 119 TKLAYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVVIAQDGVDM 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +  + +I+DT+GR      L   +  +   +K      P +++ V+DAT GQ    Q
Sbjct: 179 FKKEGFEFIIVDTSGRHKQEESLFEEMLAVATAVK------PDNIIFVMDATIGQACEAQ 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F +
Sbjct: 233 AKAFKEKVDIGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKTKPFIS 292

Query: 309 VITGCLD 315
            + G  D
Sbjct: 293 KLLGMGD 299


>gi|208435047|ref|YP_002266713.1| signal recognition particle protein [Helicobacter pylori G27]
 gi|208432976|gb|ACI27847.1| signal recognition particle protein [Helicobacter pylori G27]
          Length = 448

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 153/297 (51%), Gaps = 19/297 (6%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +G  + ++  R  D  +      +EL+  L+++D+   VA+++++++ ++     +  
Sbjct: 5   LSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLSGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           Q+ L     L   +L  LS   +  F+     P V+L+ G+ G GKTT   KL+  +   
Sbjct: 65  QQFL---DALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QLK+  ++   + V  E       +A  A K+A+  + DVL+
Sbjct: 122 NKKVLLCACDLQRLAAVEQLKVLGEQVGVE-VFYEENKSVKEIASNALKRAKEAQFDVLL 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G 
Sbjct: 181 VDSAGRLAIDKELMQELKEVKGILN------PHEVLYVADALSGQDGVKSANTFNEEIGV 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 235 SGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|32477733|ref|NP_870727.1| signal recognition particle protein [Rhodopirellula baltica SH 1]
 gi|32448287|emb|CAD77804.1| signal recognition particle protein [Rhodopirellula baltica SH 1]
 gi|327537880|gb|EGF24580.1| signal recognition particle protein [Rhodopirellula baltica WH47]
          Length = 491

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 149/312 (47%), Gaps = 38/312 (12%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK- 65
           A +SLS   KLT+G     LK+                    +E  L+ +D+  +V +  
Sbjct: 12  AFKSLSGKGKLTEGNMRDGLKI--------------------VEQSLLEADVSYSVVKDF 51

Query: 66  ---IVEELLTKRYAKDVSVQ----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
              + E+ L KR    +  Q    R++YD  EL+   L P+    N   +  P +I++ G
Sbjct: 52  MGHVSEKALGKRVLLSLRPQEELVRIVYD--ELVET-LGPVDSALNLK-ADGPTIIMLCG 107

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT  GKL+K + +  +  +L A D  R AAI+QLK+   +            D 
Sbjct: 108 LQGSGKTTTCGKLTKLLQEQNITPLLVAADLQRPAAIEQLKVIGSQLGVPVHAETDHKDP 167

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +     + A+     V+I+DTAGRL  ++ LMA + K+ R +       P  V  V+D
Sbjct: 168 VKVCQAGVEMARRDGNRVVILDTAGRLAIDAELMAELKKIDRKV------GPDQVYLVVD 221

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
             TGQ+A+     F+      G++MTK+DG ARGG L+ +     +P+ F+G GE  + L
Sbjct: 222 GMTGQDAVNSAGAFNDALELDGVVMTKLDGDARGGALLSVKQVTGVPIKFMGTGEHFDAL 281

Query: 299 EPFVAKDFSAVI 310
           EPF  +  ++ I
Sbjct: 282 EPFRPEGMASRI 293


>gi|170046875|ref|XP_001850971.1| signal recognition particle 54 kda protein [Culex quinquefasciatus]
 gi|167869479|gb|EDS32862.1| signal recognition particle 54 kda protein [Culex quinquefasciatus]
          Length = 515

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 149/307 (48%), Gaps = 21/307 (6%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-- 72
           RK+T    S S         II++  LD  + +E+   L+ +D+ + + +K+ E + +  
Sbjct: 19  RKITNALHSLSK------ATIINAEVLD-AMLKEICTALLEADVNIRLVKKLRENVKSVI 71

Query: 73  --KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                A  ++ +R++      EL+ K++ P  KP+      RP++I+ VG+ G GKTT  
Sbjct: 72  DFDEMAGGLNKRRMIQTAVFKELV-KLVDPGVKPYQ-PVKGRPNIIMFVGLQGSGKTTTC 129

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +  + 
Sbjct: 130 TKLAYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVVIAQDGVEM 189

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +  + +I+DT+GR      L   +  +   +K      P +++ V+DAT GQ    Q
Sbjct: 190 FKKEGFEFIIVDTSGRHKQEESLFEEMLAVATAIK------PDNIIFVMDATIGQACEAQ 243

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F +
Sbjct: 244 AKAFKEKVDIGSVIITKLDGHAKGGGALSAVAATSSPIIFIGTGEHIDDLEPFKTKPFIS 303

Query: 309 VITGCLD 315
            + G  D
Sbjct: 304 KLLGMGD 310


>gi|302338385|ref|YP_003803591.1| signal recognition particle protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301635570|gb|ADK80997.1| signal recognition particle protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 443

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 141/285 (49%), Gaps = 12/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSV-QRVLYDVSE 90
           IS + + D V EE++  L+ +D+ + V ++ V    EE   +   K V+  Q+ +  V++
Sbjct: 22  ISEKNIQDAV-EEIKVALLEADVNLRVVRRFVNRTIEEAKGEAVLKAVNPGQQFVKIVND 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            I ++L    +            IL++G+ G GKTT   KL  ++   G +V+L A D  
Sbjct: 81  KIVQLLGDEHQDLELKGPDALSSILMMGLQGSGKTTTSAKLGLRLKKEGRRVLLVAADLV 140

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AA+DQLK+   +   +    E   D   L  EA K A     + +I+DT+GRLH +  
Sbjct: 141 RPAAVDQLKVLGKQVDLEVFSLEKEKDPVKLVGEAKKYAIKSSFNTMIVDTSGRLHLDEE 200

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M  I  + RVL       P   L V D+ TGQ A+   + F    G +G+++TK D   
Sbjct: 201 MMKQIVDIKRVLD------PQEQLFVADSMTGQEAVTIAKSFDEQVGISGVVLTKFDSDT 254

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + +      P+ ++GVGE   DL+PF  +  ++ I G  D
Sbjct: 255 RGGAALSLKSVTGKPIKYVGVGEKPEDLDPFYPERIASRILGMGD 299


>gi|307264844|ref|ZP_07546406.1| signal recognition particle protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920102|gb|EFN50314.1| signal recognition particle protein [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 446

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VI++VG+ G GKTT  GKL+  +   G   +L A D  R AAI QL++     +    
Sbjct: 101 PAVIMMVGLQGSGKTTACGKLANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVF 160

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 +   +A  +   A++   DV+IIDTAGRLH +  LM  +  + + ++      P
Sbjct: 161 TMGDKVNPVDIAKASIDYARSHNSDVIIIDTAGRLHIDEELMEELVNIKKAVQ------P 214

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+DA TGQ+A+     F+     TG+I+TK+DG  RGG  + I    + P+ ++G
Sbjct: 215 DEILLVVDAMTGQDAVNVASSFNERLDITGVILTKLDGDTRGGAALSIKAVTQKPIKYVG 274

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE + DLEPF     ++ I G  D
Sbjct: 275 AGEKLTDLEPFYPDRMASRILGMGD 299


>gi|294793324|ref|ZP_06758469.1| signal recognition particle protein [Veillonella sp. 6_1_27]
 gi|294455755|gb|EFG24120.1| signal recognition particle protein [Veillonella sp. 6_1_27]
          Length = 450

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 156/317 (49%), Gaps = 34/317 (10%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+E    +    ++ +D V   L  +   L+ +D+   VA+  V+ +  K   
Sbjct: 3   FDSLSEKLQEAFQSLKGKGKITEDDVNLALRQVRTALLEADVNFMVAKDFVKSIKEKALG 62

Query: 77  KDV-----SVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++V       Q V+  V++ +  +L       M  SKP        P +I++VG+ G GK
Sbjct: 63  EEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMISSKP--------PTIIMLVGLQGAGK 114

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAY 183
           TT  GKL+  +   G + ML A D +R AAI QL++   +        E  G++   +  
Sbjct: 115 TTTAGKLAVYLRKQGKRPMLVAADVYRPAAITQLQVVGKQIDIPVFADETPGANPVDIVR 174

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A +Q+     DV+IIDTAGRL  + +LM  +  +   ++      PH +L V+D+  GQ
Sbjct: 175 RAVEQSTHMLKDVVIIDTAGRLAIDEVLMDELSNIKAAVR------PHEILLVVDSMIGQ 228

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A+   + F+   G  G+I+TK+DG ARGG  + I     +P+ F GV E ++  + F  
Sbjct: 229 DAVTTAQTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFYP 288

Query: 304 KDFSAVITGCLDYGEEK 320
              ++ I   LD G+ K
Sbjct: 289 DRMASRI---LDLGDFK 302


>gi|297743482|emb|CBI36349.3| unnamed protein product [Vitis vinifera]
          Length = 431

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 7/223 (3%)

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           KML P  KP       +  V++ VG+ G GKTT   K +      G K  L   DTFR+ 
Sbjct: 85  KMLDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQLK  A +    F  S + SD   +A E  ++ + +  D++I+DT+GR    + L  
Sbjct: 144 AFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFE 203

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++    +      P  V+ V+D++ GQ A  Q + F        +I+TKMDG A+GG
Sbjct: 204 EMRQVSEATR------PDLVIFVMDSSIGQAAFDQAQAFRQSVAVGAVIITKMDGHAKGG 257

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           G +  V   K PV F+G GE +++ E F  K F + + G  D+
Sbjct: 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300


>gi|291299748|ref|YP_003511026.1| signal recognition particle protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290568968|gb|ADD41933.1| signal recognition particle protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 519

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRMALLEADVALPVVKSFIHNVKERCRGAEVSKALNPGQQVIKIVNEELITILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++  ++   + P VI++ G+ G GKTT+ GKL+K + D   + ML A D  R  A+ Q
Sbjct: 88  GEARRLSF-AKNPPTVIMLAGLQGAGKTTLAGKLAKWLKDQNHQPMLVAADLQRPNAVQQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R   +    E GS   D   +A E+   A     D++IIDTAGRL  +  +MA 
Sbjct: 147 LQVLGERAGVEVYAPEPGSGVGDPVKVAKESLAHATRHARDIVIIDTAGRLGVDEEMMAQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D   P   L V+DA  GQ+A+   E F    G +G++++K+DG ARGG 
Sbjct: 207 -AAAIR-----DATNPDETLFVIDAMIGQDAVATAEAFRDGVGISGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F  +GE + D + F  +  ++ I G  D
Sbjct: 261 ALSVRQVTGQPIMFASIGEKLEDFDVFYPERMASRILGMGD 301


>gi|282165325|ref|YP_003357710.1| signal recognition 54 kDa protein [Methanocella paludicola SANAE]
 gi|282157639|dbj|BAI62727.1| signal recognition 54 kDa protein [Methanocella paludicola SANAE]
          Length = 442

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 153/302 (50%), Gaps = 32/302 (10%)

Query: 28  LKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDV 79
           LK  I  + ++ ++D    D V ++++  LI++D+ V +    + +I E  LT+     +
Sbjct: 10  LKSAIQKLANAGKIDKEIIDDVVKDIQRALIQADVNVKLVMKLSNRIKERALTEAPPAGM 69

Query: 80  S----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                V R++Y  +EL++  ++  + P   +    P  I++VG+ G GKTT   KL++  
Sbjct: 70  DSREHVLRIVY--TELVN--IIGKATPIALE----PQTIMMVGLQGSGKTTTTAKLARFF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  GLK  +   DT+R  A DQL    ++    F       DA A+     K+ Q  K D
Sbjct: 122 SRKGLKPAVICADTYRPGAYDQLSQLCEKLGVMFYGERDNKDAVAIVRNGLKETQ--KYD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRL--DPHAPHSVLQVLDATTGQNALRQVEMFH 253
           V I+DTAGR    +       ++I+ +K +    +  H  L VLDA  GQ A  Q + F+
Sbjct: 180 VRIVDTAGRHALET-------ELIKEMKDIWGLTNFTHRFL-VLDAAIGQQASEQAKAFN 231

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
              G TG+++TK+DGTA+GGG +  V      + F+GVGE  +DLE F    F + + G 
Sbjct: 232 DAVGITGVVITKLDGTAKGGGALSAVSDTNTSIAFIGVGETPDDLERFDPDGFISRLLGM 291

Query: 314 LD 315
            D
Sbjct: 292 GD 293


>gi|89053248|ref|YP_508699.1| signal recognition particle subunit FFH/SRP54 (srp54) [Jannaschia
           sp. CCS1]
 gi|88862797|gb|ABD53674.1| signal recognition particle subunit FFH/SRP54 (srp54) [Jannaschia
           sp. CCS1]
          Length = 501

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 142/283 (50%), Gaps = 15/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           +D VR  L ++   L+ +D+ + VA+  ++ +  K     V+      Q+V+  V + + 
Sbjct: 24  EDDVRTALREVRVALLEADVSLPVARTFIKNVEKKATGAAVTKSITPGQQVIKIVHDELI 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRS 152
             L     P      + P  IL+VG+ G GKTT   KL+K++ D  G KV++A+ DT R 
Sbjct: 84  ATLRGADDPGVLKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKDREGKKVLMASLDTNRP 143

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA++QL I   +   D +    G D   +A  A  QA     DV ++DTAGRLH ++ L+
Sbjct: 144 AAMEQLAILGTQIGVDTLPIVPGEDPVQIAKRAKTQASLAGYDVYMLDTAGRLHIDAELI 203

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
           A      +     D   P   L V+D  TGQ+A+     F    G +G+++T+MDG  RG
Sbjct: 204 A------QAAAVRDVANPRETLLVVDGLTGQDAVNVATEFDDKIGVSGVVLTRMDGDGRG 257

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F+G+GE ++ +E F  +  +  I G  D
Sbjct: 258 GAALSMREITGKPIRFVGLGEKMDAIETFEPERIAGRILGMGD 300


>gi|322825983|gb|EFZ30786.1| signal recognition particle, putative [Trypanosoma cruzi]
          Length = 565

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 145/295 (49%), Gaps = 17/295 (5%)

Query: 31  GITDIISSRRL--DDGVREELEDL---LIRSDIGVA----VAQKIVEELLTKRYAKDVSV 81
           G    +SS+ L  +D V+E L ++   L+++D+ V     + Q I  E+     A  ++ 
Sbjct: 90  GAISKMSSKPLLGEDDVKEFLNEVARALLQADVHVTTVKELQQTIRAEVAITSEAVGLNK 149

Query: 82  QRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           +++L   V   + K+L P  KPF      + ++++ VG+ G GKTT   K +      GL
Sbjct: 150 RKMLQSAVFSGLKKILDPGVKPF-IPAKGKNNIVMFVGLQGSGKTTSCTKYAAYFQRKGL 208

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K  L   DTFR+ A DQL+  A +    F  S   +D   +A E   + + +K D++IID
Sbjct: 209 KTALVCADTFRAGAYDQLRQNATKAKIRFYGSLTEADPVIIAKEGVAELEKEKYDLIIID 268

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           T+GR    S L   + ++   +K      P+ ++ V+ AT GQ    Q   F        
Sbjct: 269 TSGRHKQESALFEEMKQVQEAVK------PNDIVFVMSATDGQGIREQARQFKEKVPVGS 322

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   K P+ F+G GE   D E F  + F + + G  D
Sbjct: 323 VIVTKLDGHAKGGGALAAVAMTKSPIVFIGTGEHFEDFELFQPESFVSRMLGMGD 377


>gi|257469002|ref|ZP_05633096.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium
           ulcerans ATCC 49185]
          Length = 446

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 140/282 (49%), Gaps = 15/282 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           +  ++E L+++   L+ +D+   V +    ++L K    DV       Q+ +  V++ + 
Sbjct: 24  ESNIKEALKEVRMSLLEADVNYKVVKDFTNKILEKSVGTDVLKGINPGQQFIKVVNDELV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           ++L   +        + P V+++ G+ G GKTT   KL+  +   G  V++   D +R A
Sbjct: 84  ELLGGTNSRLTKGVRN-PTVLMLSGLQGAGKTTFAAKLANYLKKQGESVLMVGADVYRPA 142

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           AI QL++  ++        E   DA A+      +A+      +IIDTAGRLH +  LM 
Sbjct: 143 AIKQLQVLGEQVDVPVYAEEDNKDAVAICEHGLAKAKELNSTYMIIDTAGRLHIDEKLMD 202

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            +  + + ++      P  +L V+DA  GQ+A+   E F+ V    G+++TK+DG  RGG
Sbjct: 203 ELRNIKKAVR------PQEILLVVDAMIGQDAVNLAESFNNVLSIDGIVLTKLDGDTRGG 256

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F+GVGE I+D+E F  +   + I G  D
Sbjct: 257 AALSIKSVVGKPIKFVGVGERIDDIELFHPERLVSRILGMGD 298


>gi|218441087|ref|YP_002379416.1| signal recognition particle protein [Cyanothece sp. PCC 7424]
 gi|218173815|gb|ACK72548.1| signal recognition particle protein [Cyanothece sp. PCC 7424]
          Length = 488

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 143/290 (49%), Gaps = 29/290 (10%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D IS   + + ++E +   LI +D+ + V +  V E+  K    +V           +++
Sbjct: 20  DKISQSNIQEALKE-VRRALISADVNLQVVKGFVAEVEKKALGAEVISGVNPGQQFIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL+K      S  P VIL+ G+ G GKTT   KL+  +       
Sbjct: 79  YD--ELVKVMGESNIPLAKA-----STPPTVILMAGLQGTGKTTATAKLALFLRKEKRTC 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIID 200
           ++ A D +R AAIDQL     +   +    E+G+DA    +A    ++A+   VD +IID
Sbjct: 132 LMVATDVYRPAAIDQLITLGQQI--EVPVFEMGTDADPVEIARLGVEKAKELGVDTVIID 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  +M  + ++   +K      P   L V+DA TGQ A      FH   G TG
Sbjct: 190 TAGRLQIDQDMMGELARIKATVK------PDDTLLVVDAMTGQEAATLTHTFHEQIGITG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            I+TK+DG  RGG  + +      P+ F+GVGE +  L+PF  +  ++ I
Sbjct: 244 AILTKLDGDTRGGAALSVRQVSGQPIKFVGVGEKVEALQPFYPERMASRI 293


>gi|160874405|ref|YP_001553721.1| signal recognition particle protein [Shewanella baltica OS195]
 gi|160859927|gb|ABX48461.1| signal recognition particle protein [Shewanella baltica OS195]
 gi|315266640|gb|ADT93493.1| signal recognition particle protein [Shewanella baltica OS678]
          Length = 457

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL ++ V+E L ++   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + K +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K V++ + D +R AAI QL+  A   + +F  S++      +A  A   A+
Sbjct: 121 GKFLRERHKKSVLVVSVDVYRPAAIKQLETLAQEVAVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|24473790|gb|AAL55410.1| SRP54-like protein [Leishmania major]
          Length = 487

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 15/284 (5%)

Query: 42  DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLTKRYAKDVSVQRVLYD-VSELIH 93
           +D V+E   E+   L+++D+ V + +K    I  EL        ++ +++L + V   + 
Sbjct: 25  EDDVKELMNEIARALLQADVNVTIVKKLQVSIRTELALAEEGAGLNKRKILQNAVFNGLK 84

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           ++L P  KPF      R +V++ VG+ G GKTT   K +      G K  L   DTFR+ 
Sbjct: 85  RILDPGVKPF-LPVKGRHNVVMFVGLQGSGKTTSCTKYAAYFQRKGFKTALVCADTFRAG 143

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQL+  A +    F  S   +D  A+A E   + + +K D++I+DT+GR    S L  
Sbjct: 144 AYDQLRQNATKAKVRFYGSLTEADPVAIAKEGVAELKKEKYDLIIVDTSGRHKQESALFE 203

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++   +K      P+ ++ V+ AT GQ    Q   F  +     +I+TK+D   +GG
Sbjct: 204 EMKQVEEAVK------PNDIVFVMSATDGQAVEEQARNFKEMVAVGSVIVTKLDCQTKGG 257

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           G +  V   + P+ F+G GE   D + F  + F   + G  D G
Sbjct: 258 GALSAVAATRSPIVFIGTGEHFEDFDLFNPERFVQKMLGMGDIG 301


>gi|71651473|ref|XP_814414.1| signal recognition particle [Trypanosoma cruzi strain CL Brener]
 gi|70879383|gb|EAN92563.1| signal recognition particle, putative [Trypanosoma cruzi]
          Length = 487

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 145/295 (49%), Gaps = 17/295 (5%)

Query: 31  GITDIISSRRL--DDGVREELEDL---LIRSDIGVA----VAQKIVEELLTKRYAKDVSV 81
           G    +SS+ L  +D V+E L ++   L+++D+ V     + Q I  E+     A  ++ 
Sbjct: 12  GAISKMSSKPLLGEDDVKEFLNEVARALLQADVHVTTVKELQQTIRAEVAITSEAVGLNK 71

Query: 82  QRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           +++L   V   + K+L P  KPF      + ++++ VG+ G GKTT   K +      GL
Sbjct: 72  RKMLQTAVFSGLRKILDPGVKPF-IPAKGKTNIVMFVGLQGSGKTTSCTKYAAYFQRKGL 130

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K  L   DTFR+ A DQL+  A +    F  S   +D   +A E   + + +K D++IID
Sbjct: 131 KTALVCADTFRAGAYDQLRQNATKAKIRFYGSLTEADPVIIAKEGVAELEKEKYDLIIID 190

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           T+GR    S L   + ++   +K      P+ ++ V+ AT GQ    Q   F        
Sbjct: 191 TSGRHKQESALFEEMKQVQEAVK------PNDIVFVMSATDGQGIREQARQFKEKVPVGS 244

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   K P+ F+G GE   D E F  + F + + G  D
Sbjct: 245 VIITKLDGHAKGGGALAAVAMTKSPIVFIGTGEHFEDFELFQPESFVSRMLGMGD 299


>gi|331091002|ref|ZP_08339844.1| signal recognition particle protein [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405224|gb|EGG84760.1| signal recognition particle protein [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 449

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 151/304 (49%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++ S  RL +D V+  L ++   L+ +D+   V +  ++++  +   
Sbjct: 3   FDSLTEKLQNVFKNLRSKGRLTEDDVKTALREVKMALLEADVNFKVVKGFIKDVQERAVG 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +     +      VI++ G+ G GKTT   KL
Sbjct: 63  QDVMSGLNPGQMVIKIVNEELVKLMGSETTEIKLEPGQATTVIMMAGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G K +L A D +R AAI QL++  ++   +            +A  A + A  
Sbjct: 123 AGKFKLKGKKPLLVACDVYRPAAIKQLQVNGEKQGVEVFTMGENHKPVNIAKAALEHAAK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DTAGRLH +  +M  + ++   +        H  + V+DA TGQ+A+     
Sbjct: 183 NGNNIVILDTAGRLHVDEEMMEELQQIKEAV------TVHQTILVVDAMTGQDAVNVAGT 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + I      P++++G+GE ++DLE F     ++ I 
Sbjct: 237 FNDKIGIDGVIVTKLDGDTRGGAALSIRAVTGKPIFYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|317063249|ref|ZP_07927734.1| signal recognition particle protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313688925|gb|EFS25760.1| signal recognition particle protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 448

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 140/282 (49%), Gaps = 15/282 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           +  ++E L+++   L+ +D+   V +    ++L K    DV       Q+ +  V++ + 
Sbjct: 26  ESNIKEALKEVRMSLLEADVNYKVVKDFTNKILEKSVGTDVLKGINPGQQFIKVVNDELV 85

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           ++L   +        + P V+++ G+ G GKTT   KL+  +   G  V++   D +R A
Sbjct: 86  ELLGGTNSRLTKGVRN-PTVLMLSGLQGAGKTTFAAKLANYLKKQGESVLMVGADVYRPA 144

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           AI QL++  ++        E   DA A+      +A+      +IIDTAGRLH +  LM 
Sbjct: 145 AIKQLQVLGEQVDVPVYAEEDNKDAVAICEHGLAKAKELNSTYMIIDTAGRLHIDEKLMD 204

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            +  + + ++      P  +L V+DA  GQ+A+   E F+ V    G+++TK+DG  RGG
Sbjct: 205 ELRNIKKAVR------PQEILLVVDAMIGQDAVNLAESFNNVLSIDGIVLTKLDGDTRGG 258

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F+GVGE I+D+E F  +   + I G  D
Sbjct: 259 AALSIKSVVGKPIKFVGVGERIDDIELFHPERLVSRILGMGD 300


>gi|224823839|ref|ZP_03696948.1| signal recognition particle protein [Lutiella nitroferrum 2002]
 gi|224604294|gb|EEG10468.1| signal recognition particle protein [Lutiella nitroferrum 2002]
          Length = 452

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 147/286 (51%), Gaps = 14/286 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           ++   + D +RE +   L+ +D+ + V +  +  +  +   ++V       Q ++  V+E
Sbjct: 22  LTDANIQDAMRE-VRMALLEADVALPVVKTFISHVKERALGQEVMGSLTPGQALVGVVNE 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT 149
            + K++   +   N   +  P ++L+ G+ G GKTT +GKL+K + +    KV++ + D 
Sbjct: 81  ELTKLMGEKNDALNL-AAVPPAIVLMAGLQGAGKTTTVGKLAKLLKETQKKKVLVVSADV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A +   ++  S+       +A  A   A+    DVL++DTAGRL  + 
Sbjct: 140 YRPAAIEQLKTLAGQIGVEWFPSDGTQKPVEIARAAVDHAKRHFFDVLMVDTAGRLAIDD 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +M  I  +   L       P   L V+DA  GQ+A+   + F+     TG+I+TKMDG 
Sbjct: 200 AMMQEIKALHASLN------PIETLFVVDAMQGQDAVNTAQAFNEALPLTGVILTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ARGG  + +      P+ F+GVGE +  LEPF  +  ++ I G  D
Sbjct: 254 ARGGAALSVRHVTGKPIKFIGVGEKLTGLEPFHPERMASRILGMGD 299


>gi|16127883|ref|NP_422447.1| signal recognition particle protein [Caulobacter crescentus CB15]
 gi|221236704|ref|YP_002519141.1| signal recognition particle GTPase, SRP [Caulobacter crescentus
           NA1000]
 gi|13425409|gb|AAK25615.1| signal recognition particle protein [Caulobacter crescentus CB15]
 gi|220965877|gb|ACL97233.1| signal recognition particle GTPase, SRP [Caulobacter crescentus
           NA1000]
          Length = 508

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 157/297 (52%), Gaps = 33/297 (11%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-------------- 80
           ++S + +D+ +RE +   L+ +D    VA  +V++ ++K  AKD++              
Sbjct: 21  VLSEKDIDEALRE-VRVALLEAD----VALPVVKDFISK--AKDLAGGEAVIRSVKPADQ 73

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           V +++YD   L+   ++   +P   + + + P VIL+ G+ G GKTT  GKL+ ++S + 
Sbjct: 74  VVKIVYD--GLVD--MLGGEEPTGLNLALNPPSVILMAGLQGSGKTTTTGKLALRLSKSD 129

Query: 140 LK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
            K V++A+ DT R AA++QL   A +   D +    G  A  +A  A   A+    DVLI
Sbjct: 130 RKKVLVASLDTRRPAAMEQLATLARQVEVDSLPIVAGQSAPDIAKRALSAAKLGGYDVLI 189

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGR   +  +M+   ++ R+       +P   + V D+ TGQ+A+R  + FH     
Sbjct: 190 LDTAGRTTLDESMMSEAAEIARI------ASPSETILVADSLTGQDAVRTAKAFHERLPL 243

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TGLI+T+ DG  RGG  + +     +P+ FLG GE I+ L+ F A+  +  I G  D
Sbjct: 244 TGLILTRADGDGRGGAALSMRHVTGLPIKFLGAGEKIDQLDVFDARRVAGRILGQGD 300


>gi|296814538|ref|XP_002847606.1| signal recognition particle receptor subunit alpha [Arthroderma
           otae CBS 113480]
 gi|238840631|gb|EEQ30293.1| signal recognition particle receptor subunit alpha [Arthroderma
           otae CBS 113480]
          Length = 646

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 138/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSK-- 101
           +ED L++ ++    A ++ E    EL+ K+ A   S+   L   +   + K+L P S   
Sbjct: 357 MEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQSIDSALRAGMESSLRKILTPTSSLD 416

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P N     RP+VI VVGVNGVGK+T + KL   +     KV++AA DTFR
Sbjct: 417 LLREIEVVTSPTNKQQPRRPYVISVVGVNGVGKSTNLSKLCFFLLQNKYKVLIAACDTFR 476

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A   A A   DV++ID
Sbjct: 477 SGAVEQLRVHA-RNLKELSARENVGHVELYEKGYGKDAANVAKDAVSYAAANDFDVVLID 535

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH----AVA 256
           TAGR HN+  LM+ + K  +         P  +L V +A  G +++ Q   F+    A  
Sbjct: 536 TAGRRHNDQRLMSSLEKFAKFAN------PDKILMVGEALVGTDSVMQARNFNQAFGAGR 589

Query: 257 GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
           G  G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 590 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 632


>gi|191638588|ref|YP_001987754.1| Signal recognition particle protein Ffh [Lactobacillus casei BL23]
 gi|227534903|ref|ZP_03964952.1| signal recognition particle protein Ffh [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239631962|ref|ZP_04674993.1| signal recognition particle GTPase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066648|ref|YP_003788671.1| signal recognition particle GTPase [Lactobacillus casei str. Zhang]
 gi|190712890|emb|CAQ66896.1| Signal recognition particle protein Ffh [Lactobacillus casei BL23]
 gi|227187659|gb|EEI67726.1| signal recognition particle protein Ffh [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526427|gb|EEQ65428.1| signal recognition particle GTPase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300439055|gb|ADK18821.1| Signal recognition particle GTPase [Lactobacillus casei str. Zhang]
 gi|327382629|gb|AEA54105.1| Signal recognition particle protein [Lactobacillus casei LC2W]
 gi|327385824|gb|AEA57298.1| Signal recognition particle protein [Lactobacillus casei BD-II]
          Length = 478

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 154/316 (48%), Gaps = 22/316 (6%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E LS   +L K F+    K K   +DI  + R       E+   L+ +D+   V + 
Sbjct: 1   MAFEGLS--ERLQKAFSGLRRKGKVSESDIRDAMR-------EIRLALLEADVNFDVVKT 51

Query: 66  IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++ + TK    +V       Q+++  V++ + K +   + P N    H P VI++ G+ 
Sbjct: 52  FIKNVRTKALGAEVLESLTPSQQIIKIVNDELVKTMGEAAVPLNK-APHIPTVIMMAGLQ 110

Query: 121 GVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT +GKLSK  M +   + +L A D +R AAIDQL+    + +          D  
Sbjct: 111 GAGKTTTVGKLSKYLMDNDSARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDVDPV 170

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +  +    A+  K D ++IDTAGRL  +  LM  + K I+ L       P+ +L V+DA
Sbjct: 171 EIVRQGLATAKENKNDYVLIDTAGRLQIDEKLMNEL-KNIKELAH-----PNDILLVVDA 224

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ A+   + F+     TG+++TK+DG  RGG  + I      P+ F+G GE ++ L+
Sbjct: 225 MTGQAAVDVAKGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALD 284

Query: 300 PFVAKDFSAVITGCLD 315
            F     +  I G  D
Sbjct: 285 VFYPDRMANRILGMGD 300


>gi|194466489|ref|ZP_03072476.1| signal recognition particle protein [Lactobacillus reuteri 100-23]
 gi|194453525|gb|EDX42422.1| signal recognition particle protein [Lactobacillus reuteri 100-23]
          Length = 481

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 140/280 (50%), Gaps = 16/280 (5%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96
           +RE + ++   L+ +D+   V +  V+ +  K    +V       Q+++  V++ + K++
Sbjct: 28  LRETMREIRLALLEADVNFKVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVNDELTKLM 87

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAI 155
              + P N    H P VI++VG+ G GKTT  GKL+ ++ +    + M  A D +R AAI
Sbjct: 88  GEEAVPLNK-APHIPTVIMMVGLQGAGKTTTAGKLALRLKNENHARPMFIAADVYRPAAI 146

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            QL+  AD+            D   +  E  + A+    D +IIDTAGRL  +  LM  +
Sbjct: 147 TQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVAKKNHNDYVIIDTAGRLQIDEQLMDEL 206

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +  ++       P+ +L V+D+ TGQNA+   + F      TG+I+TK+DG  RGG  
Sbjct: 207 ANIKELVN------PNEILLVIDSMTGQNAVNTAQGFDDKLNITGVILTKLDGDTRGGAA 260

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G GE + DL+ F     ++ I G  D
Sbjct: 261 MSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASRILGMGD 300


>gi|24372934|ref|NP_716976.1| signal recognition particle protein [Shewanella oneidensis MR-1]
 gi|24347070|gb|AAN54421.1|AE015579_10 signal recognition particle protein Ffh [Shewanella oneidensis
           MR-1]
          Length = 457

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72
           F + + +L   + +I    RL ++ V+E L ++   L+ +D+ + V ++ V    E  + 
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  AK +S  Q  +  V   + K +   ++  +   +  P V+++ G+ G GKTT + KL
Sbjct: 62  QEVAKSLSPGQAFIKIVQSELEKSMGEANQALDL-ATQPPAVVMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +     K V++ + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   LK      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAALK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|256832215|ref|YP_003160942.1| signal recognition particle protein [Jonesia denitrificans DSM
           20603]
 gi|256685746|gb|ACV08639.1| signal recognition particle protein [Jonesia denitrificans DSM
           20603]
          Length = 525

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 28/302 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FAS S +L     ++ S  RL     D    E+   L+ +D+ V+V +     +  +  +
Sbjct: 2   FASLSDRLTSTFKNLRSKGRLSEADIDATIREIRRALLDADVAVSVVRDFTGAVRERALS 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V + +  +L   ++P     +  P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVHDELVTVLGGTARPLQRAKTG-PTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS------------DAA 179
           +  + + G   ML A D  R  A+ QLKI  +R          G+            D  
Sbjct: 121 AVHLREQGHTPMLIAADLQRPNAVQQLKIVGERAGVPVYAPHPGNQGEGATPGLSAGDPV 180

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A   ++ A+A++ D +I+DTAGRL  ++ LM      IR     D  +PH +L V+DA
Sbjct: 181 AIARAGYETAKARQHDTVIVDTAGRLGVDAELMEQAAD-IR-----DAVSPHEILFVIDA 234

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             GQ+A+     F    G TG++++K+DG ARGG  + +      P+ F   GE + D E
Sbjct: 235 MIGQDAVATARAFADGVGFTGVVLSKLDGDARGGAALSVAKVTGQPILFASTGENLTDFE 294

Query: 300 PF 301
            F
Sbjct: 295 VF 296


>gi|157870075|ref|XP_001683588.1| signal recognition particle [Leishmania major strain Friedlin]
 gi|68126654|emb|CAJ04436.1| putative signal recognition particle [Leishmania major strain
           Friedlin]
          Length = 519

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 15/284 (5%)

Query: 42  DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLTKRYAKDVSVQRVLYD-VSELIH 93
           +D V+E   E+   L+++D+ V + +K    I  EL        ++ +++L + V   + 
Sbjct: 25  EDDVKELMNEIARALLQADVNVTIVKKLQVSIRTELALAEEGAGLNKRKILQNAVFNGLK 84

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           ++L P  KPF      R +V++ VG+ G GKTT   K +      G K  L   DTFR+ 
Sbjct: 85  RILDPGVKPF-LPVKGRHNVVMFVGLQGSGKTTSCTKYAAYFQRKGFKTALVCADTFRAG 143

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQL+  A +    F  S   +D  A+A E   + + +K D++I+DT+GR    S L  
Sbjct: 144 AYDQLRQNATKAKVRFYGSLTEADPVAIAKEGVAELKKEKYDLIIVDTSGRHKQESALFE 203

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++   +K      P+ ++ V+ AT GQ    Q   F  +     +I+TK+D   +GG
Sbjct: 204 EMKQVEEAVK------PNDIVFVMSATDGQAVEEQARNFKEMVAVGSVIVTKLDCQTKGG 257

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           G +  V   + P+ F+G GE   D + F  + F   + G  D G
Sbjct: 258 GALSAVAATRSPIVFIGTGEHFEDFDLFNPERFVQKMLGMGDIG 301


>gi|332285431|ref|YP_004417342.1| signal recognition particle protein [Pusillimonas sp. T7-7]
 gi|330429384|gb|AEC20718.1| signal recognition particle protein [Pusillimonas sp. T7-7]
          Length = 471

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 113/218 (51%), Gaps = 16/218 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG----------LKVMLAAGDTFRSAAIDQ 157
           S  P VIL+ G+ G GKTT  GKL+K +S+ G           KV++ + D +R AAI+Q
Sbjct: 101 SQPPAVILMAGLQGAGKTTSTGKLAKWLSEGGHIQGGRKTGKKKVLVVSADVYRPAAIEQ 160

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LK  A +   DF+ +        +  +A   A+    DVLI+DTAGRL  +  +M     
Sbjct: 161 LKTVAAQVKVDFLPTNTLQKPEDIGRQALDHAKRHHYDVLIVDTAGRLGIDEAMMG---- 216

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            IR L   D   P   L V+DA  GQ+A+   + F      TG+++TKMDG ARGG  + 
Sbjct: 217 EIRALH--DLLTPIETLFVVDAMQGQDAVNVAQAFSQALPLTGVVLTKMDGDARGGAALS 274

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +      P+ F+G+ E ++ LEPF  +  +  I G  D
Sbjct: 275 VRHVTGKPLKFVGLSEKMDGLEPFHPERMAQRILGMGD 312


>gi|154509174|ref|ZP_02044816.1| hypothetical protein ACTODO_01695 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798808|gb|EDN81228.1| hypothetical protein ACTODO_01695 [Actinomyces odontolyticus ATCC
           17982]
          Length = 527

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 138/274 (50%), Gaps = 18/274 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           LI +D+ + V ++   ++  K Y    S      Q+V+  V E + ++L   ++  N+  
Sbjct: 38  LIDADVALPVVRQFTTQVREKAYGAARSKALNPGQQVVSIVHEELVEILGGATRELNFAE 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V ++ G+ G GKTT+ GKL K + + G  V+L A D  R  A+ QL++  +R   
Sbjct: 98  SG-PTVFMLAGLQGAGKTTLAGKLGKWLREEGKTVLLVASDLQRPNAVQQLQVVGERAGV 156

Query: 168 DFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                E G+   D   +A    + A+   ++V+I+DTAGRL  +  +M       + +  
Sbjct: 157 KVWAPEPGNGVGDPVEVARSGVEFARQSGINVVIVDTAGRLGVDQEMME------QAIAI 210

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            D   PH ++ VLDA  GQ+A+     F    G TG++++K+DG ARGG  + +      
Sbjct: 211 RDAVNPHEIMFVLDAMVGQDAVSTSTAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGA 270

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           P+ F   GEG++D E F A   +  I   LD G+
Sbjct: 271 PILFASTGEGLDDFERFHADRMAGRI---LDMGD 301


>gi|284039605|ref|YP_003389535.1| signal recognition particle protein [Spirosoma linguale DSM 74]
 gi|283818898|gb|ADB40736.1| signal recognition particle protein [Spirosoma linguale DSM 74]
          Length = 439

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 6/212 (2%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           N +    P +IL+ G+ G GKTT  GKL+  +   G  V+L A D +R AAIDQLK+  +
Sbjct: 92  NINIKGDPAIILIAGLQGSGKTTFSGKLASYLKKQGRNVLLVAADIYRPAAIDQLKVLGE 151

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +   +        +A  +A  A   A+     ++I+DTAGRL  +  +M  I  + R + 
Sbjct: 152 QVGVEVYAEPENKNAVQIAQNAIALARKTGKKIVIVDTAGRLAVDEAMMQEIEALKRAI- 210

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                AP   L V+D+ TGQ+A+   + F+      G+++TK+DG ARGG  + I     
Sbjct: 211 -----APSETLFVVDSMTGQDAVNTAKTFNERLNFDGVVLTKLDGDARGGAALSIKTVVN 265

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+  GE +  L+ F     ++ I G  D
Sbjct: 266 KPIKFISTGEKMEALDVFYPDRMASRILGMGD 297


>gi|167469821|ref|ZP_02334525.1| signal recognition particle protein [Yersinia pestis FV-1]
          Length = 302

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL ++ ++E L ++   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELISAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K V++ + D +R AAI QL+  A     DF  S+       +   A +QA+
Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVGIDFFPSDAQEKPIDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|58617285|ref|YP_196484.1| Signal recognition particle protein [Ehrlichia ruminantium str.
           Gardel]
 gi|58416897|emb|CAI28010.1| Signal recognition particle protein [Ehrlichia ruminantium str.
           Gardel]
          Length = 450

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 148/273 (54%), Gaps = 15/273 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-----VSVQRVLYDVS 89
           +ISS   D  V EE++  L+ +D+ ++V +  + ++  K   +      +  Q V+  + 
Sbjct: 21  VISSEDFD-SVMEEVKVALLEADVALSVVKSFINDIKDKIVGETTIKGVLPTQMVIKKIQ 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + + ++L    +  + D S +P  VI++VG+ GVGKTT   KL+ ++ +   +V++A+ D
Sbjct: 80  DCLIEILGVEKQ--DLDLSAKPFAVIMMVGLQGVGKTTTTAKLALRLKNKKKEVLMASLD 137

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +R AA  QL+I   +     +          +A  A   A+    +VLI DTAGRLH +
Sbjct: 138 LYRPAAQTQLEILGKQIDVKTLPIIEKQQPIDIAKRAITVAKESNCNVLIFDTAGRLHVD 197

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
            I+M  + K I+ +      +P  V+ V DA  GQ+A+  V+ F +  G TG+I+T++DG
Sbjct: 198 EIMMEEL-KAIKAI-----TSPSEVILVADAMIGQDAVNVVKSFDSNIGITGIILTRIDG 251

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            +RGG  + + ++   P+ FL  GE ++DL+ F
Sbjct: 252 DSRGGAALSMKMSTGTPIKFLATGEKLSDLDDF 284


>gi|159117703|ref|XP_001709071.1| SRP GTPase [Giardia lamblia ATCC 50803]
 gi|157437186|gb|EDO81397.1| SRP GTPase [Giardia lamblia ATCC 50803]
          Length = 530

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/239 (35%), Positives = 116/239 (48%), Gaps = 15/239 (6%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           VQR++  V EL+  ML P   PF     +R +VI+ VG+ G GKTT   K        G 
Sbjct: 77  VQRIV--VQELV-SMLSPERPPFR-PVRNRANVIMFVGLQGAGKTTTCVKFGAYYKRKGW 132

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           +V L   DTFR+ A DQLK         F  S    D   +A +  K   +   +++I+D
Sbjct: 133 RVGLVCCDTFRTGAFDQLKQNCTAVKLPFYGSYSEKDPVQIAQDGVKHFVSLNFELIILD 192

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           T+GR      L          +K +D    PH  + VLD++ GQ A  Q + F       
Sbjct: 193 TSGRHRQEEALFTE-------MKLIDSAVQPHDHVFVLDSSIGQAAYEQADAFSNAVEIG 245

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            +I+TK+DG +RGGG +  V   K P+ FLG GE I DLE F    F +V+ G   YG+
Sbjct: 246 SVILTKLDGHSRGGGALAAVSATKAPIVFLGTGEKIEDLEFFDPSRFVSVMLG---YGD 301


>gi|304437009|ref|ZP_07396972.1| signal recognition particle protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369960|gb|EFM23622.1| signal recognition particle protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 458

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 143/280 (51%), Gaps = 14/280 (5%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKM 95
           ++D +RE +   L+ +D+   V +  V  +  +   ++V     + Q V+  V E +  +
Sbjct: 28  VNDAMRE-VRMALLEADVNFKVVKDFVRRVKERAVGQEVLDTLTAAQAVVKIVDEELTAL 86

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           +       N    + P VI++VG+ G GKTT  GKL+  +   G + +L A D +R AAI
Sbjct: 87  MGGTESRLNIS-PNPPTVIMLVGLQGSGKTTSAGKLALMLKKQGKRPLLVADDIYRPAAI 145

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            QL++   +     V S+   DA A+A  A   + +   DV+IIDTAGRL  +  LM  +
Sbjct: 146 KQLEVIGGKVDVP-VFSQGQEDAVAIARAAIAHSSSHANDVVIIDTAGRLQIDETLMQEL 204

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +   +K      PH +L V+DA TGQ A+   E F A  G  G+IMTK+DG ARGG  
Sbjct: 205 RDIKAEVK------PHEILLVVDAMTGQEAVNVAEAFDASLGLDGVIMTKLDGDARGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G+GE +  LE F     ++ I G  D
Sbjct: 259 LSIKAVTGCPLKFVGMGEKLEPLEVFHPDRMASRILGMGD 298


>gi|238926150|ref|ZP_04657910.1| signal recognition particle protein Ffh [Selenomonas flueggei ATCC
           43531]
 gi|238886040|gb|EEQ49678.1| signal recognition particle protein Ffh [Selenomonas flueggei ATCC
           43531]
          Length = 458

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 143/280 (51%), Gaps = 14/280 (5%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKM 95
           ++D +RE +   L+ +D+   V +  V  +  +   ++V     + Q V+  V E +  +
Sbjct: 28  VNDAMRE-VRMALLEADVNFKVVKDFVRRVKERAVGQEVLDTLTAAQAVVKIVDEELTAL 86

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           +       N    + P VI++VG+ G GKTT  GKL+  +   G + +L A D +R AAI
Sbjct: 87  MGGTESRLNIS-PNPPTVIMLVGLQGSGKTTSAGKLALMLKKQGKRPLLVADDIYRPAAI 145

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            QL++   +     V S+   DA A+A  A   + +   DV+IIDTAGRL  +  LM  +
Sbjct: 146 KQLEVIGGKVDVP-VFSQGQEDAVAIARAAIAHSSSHANDVVIIDTAGRLQIDETLMQEL 204

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +   +K      PH +L V+DA TGQ A+   E F A  G  G+IMTK+DG ARGG  
Sbjct: 205 RDIKAEVK------PHEILLVVDAMTGQEAVNVAEAFDASLGLDGVIMTKLDGDARGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G+GE +  LE F     ++ I G  D
Sbjct: 259 LSIKAVTGCPLKFVGMGEKLEPLEVFHPDRMASRILGMGD 298


>gi|332297535|ref|YP_004439457.1| signal recognition particle protein [Treponema brennaborense DSM
           12168]
 gi|332180638|gb|AEE16326.1| signal recognition particle protein [Treponema brennaborense DSM
           12168]
          Length = 468

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 155/313 (49%), Gaps = 19/313 (6%)

Query: 10  SLSWIRKLTKGFASTSLKL--KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           ++  + K+T  F+    K+  K  IT+    + +++ V E+++  L+ +D+ + V ++ V
Sbjct: 23  TVRMLEKITNTFSDVVRKVSGKSSITE----KNIEETV-EQIKIALLEADVNLRVVRRFV 77

Query: 68  EELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              + +   + V  SV   Q+ +  + + I  +L    +           VIL++G+ G 
Sbjct: 78  NSTIEEAKGEKVLRSVDPGQQFVKIIYDKIVSLLGDAKQDLKLKGPDTQSVILLLGLQGA 137

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT   KL+ +++  G K +LAA D  R AAI QL +  ++     V  E   DA  +A
Sbjct: 138 GKTTAASKLAARLAKEGRKPLLAACDLVRPAAIQQLCVLGEKIGIP-VYKEDSKDAVRVA 196

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             A   A+    D LI+DTAGRL  +  +M  I  + + +      +P  VL V DA TG
Sbjct: 197 KNALAYAKKNGFDTLIVDTAGRLQIDESMMDEIAAVKKAV------SPDEVLLVADAMTG 250

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+   + F      TG+I+TK D  ARGG  + +      P+ F+G GE  +D EPF 
Sbjct: 251 QNAVDIAKSFDERLSLTGVILTKFDSDARGGAALSLKSVTGKPILFIGTGEKTSDFEPFH 310

Query: 303 AKDFSAVITGCLD 315
            +  ++ I G  D
Sbjct: 311 PERIASRILGMGD 323


>gi|47570278|ref|ZP_00240927.1| signal recognition particle protein [Bacillus cereus G9241]
 gi|47553042|gb|EAL11444.1| signal recognition particle protein [Bacillus cereus G9241]
          Length = 404

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAGRLH +  LM  + K+  V K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LE F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300


>gi|325957954|ref|YP_004289420.1| Signal recognition 54 kDa protein [Methanobacterium sp. AL-21]
 gi|325329386|gb|ADZ08448.1| Signal recognition 54 kDa protein [Methanobacterium sp. AL-21]
          Length = 447

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 24/282 (8%)

Query: 45  VREELEDL---LIRSDIGVAV----AQKIVEELLTKRYAKDVS----VQRVLYDVSELIH 93
           V+E ++D+   LI+SD+ + +    ++ I +  L +   K V+    V R++Y+  EL++
Sbjct: 31  VKEVIKDIQRALIQSDVNIKLVLNLSKTIEDRSLNEEPPKGVTPKEHVVRIVYE--ELVN 88

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            +    S     +   RP+ IL +G+ G GKTT IGKL+K +   G    + + DT+R A
Sbjct: 89  LLG---SSAQEVEIDKRPYKILFMGLQGSGKTTSIGKLTKYLQKKGFNPAIVSTDTWRPA 145

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A +QL    +  +          DA  LA    K A  KK DV+I+DTAGR    S L+A
Sbjct: 146 AYEQLLQLTEPMNVPVYGDHENKDALDLARTGLKAA--KKNDVIIVDTAGRHKEESDLLA 203

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            +  +  ++       P  V+ V+D T GQ A  Q   F+       +I+TK+DG+A+GG
Sbjct: 204 EMESLSTIVD------PDEVIMVIDGTIGQQAGEQALAFNNATKIGSIIITKLDGSAKGG 257

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +  V     P+ F+G GE + D E F    F + + G  D
Sbjct: 258 GALSAVAEIGAPIKFIGTGERVEDFEAFDPDRFISRLLGMGD 299


>gi|227530556|ref|ZP_03960605.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus vaginalis
           ATCC 49540]
 gi|227349562|gb|EEJ39853.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus vaginalis
           ATCC 49540]
          Length = 484

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 143/280 (51%), Gaps = 16/280 (5%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96
           +RE + ++   L+ +D+  AV +  V+++  K    +V       Q+++  V++ + +++
Sbjct: 28  LRETMREIRLALLEADVNFAVVKDFVKKVREKAAGAEVLKGLNPAQQIVKIVNDELTELM 87

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAI 155
              + P N   SH P VI++VG+ G GKTT  GKL+ ++ +    + +  A D +R AAI
Sbjct: 88  GEEAVPLNKS-SHIPTVIMMVGLQGAGKTTTAGKLALRLKNEDKARPLFIAADVYRPAAI 146

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            QLK  AD+            D   +  +  + A+    D +IIDTAGRL  +  LM  +
Sbjct: 147 TQLKQVADQIDVPVFEKGTDVDPVEIVRQGMEVAKQNHNDYVIIDTAGRLQIDEQLMDEL 206

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             + +++       P  +L V+D+ TGQNA+   + F      TG+++TK+DG  RGG  
Sbjct: 207 ANIKQLVN------PDEILLVIDSMTGQNAVNTAQGFDDKLDITGVVLTKLDGDTRGGAA 260

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G GE + DL+ F     ++ I G  D
Sbjct: 261 MSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASRILGMGD 300


>gi|325273825|ref|ZP_08140010.1| signal recognition particle protein [Pseudomonas sp. TJI-51]
 gi|324101031|gb|EGB98692.1| signal recognition particle protein [Pseudomonas sp. TJI-51]
          Length = 458

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 158/306 (51%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKDRAVG 61

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
            +VS  R L       +++   L  L    N D +     P V+L+ G+ G GKTT  GK
Sbjct: 62  TEVS--RSLTPGQAFVKIVQAELESLMGAANEDLALNAAPPAVVLMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I     A+A  A ++A
Sbjct: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH ++ +MA I  +   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFIDVVIVDTAGRLHIDADMMAEIKALHAAVK------PIETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|257068178|ref|YP_003154433.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Brachybacterium faecium DSM 4810]
 gi|256558996|gb|ACU84843.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Brachybacterium faecium DSM 4810]
          Length = 530

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 136/262 (51%), Gaps = 15/262 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ VAV ++    +  +   ++VS      Q+V+  V++ + ++L   +  
Sbjct: 33  EIRRALLDADVAVAVVREFTGRVRERALGEEVSKALNPAQQVVKIVNDELVEVLGGATGE 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            ++   + P VI++ G+ G GKTT+ GKL+K M   G   +L A D  R  A+ QL++  
Sbjct: 93  LHF-AKNPPTVIMLAGLQGAGKTTLAGKLAKWMKAEGHTPLLVAADLQRPNAVTQLQVVG 151

Query: 163 DRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +R        E G+   D   +A      AQ ++ DV+I+DTAGRL  +  +M    + I
Sbjct: 152 ERAGVPVFAPEPGNGVGDPVLVAMNGVSTAQFQQHDVVIVDTAGRLGIDEEMMEQ-ARNI 210

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           R     D   PH  L V+DA  GQ+A R  E F    G TG++++K+DG ARGG  + I 
Sbjct: 211 R-----DAVTPHETLFVVDAMIGQDAARVAEAFRDGVGFTGVVLSKLDGDARGGAALSIT 265

Query: 280 VTHKIPVYFLGVGEGINDLEPF 301
              + P+ F   GE +++ E F
Sbjct: 266 GVTQRPILFASTGESLDEFERF 287


>gi|311739736|ref|ZP_07713571.1| signal recognition particle protein [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305552|gb|EFQ81620.1| signal recognition particle protein [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 549

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 145/282 (51%), Gaps = 26/282 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  ++ +  +    +VS      Q+V+  V+E + ++L   ++  N   
Sbjct: 38  LLEADVSLTVVRGFIKRIKERARGAEVSEALNPAQQVVKIVNEELIEILGGETRRLNL-A 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
            + P VI++ G+ G GKTT+ GKL+K ++  G   ML A D  R  A+ QL+I  +R   
Sbjct: 97  KNPPTVIMLAGLQGAGKTTLAGKLAKHLAKQGHTPMLVACDLQRPGAVQQLQIVGERAEV 156

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   TS D    E+G+   D   +A +   +A+ K+ DV+IIDTAGRL  +  LM 
Sbjct: 157 PTFAPDPGTSLDSNEHEMGTSHGDPVDVAKQGIAEAKQKQHDVVIIDTAGRLGIDETLMT 216

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              + IR     D   P  VL V+D+  GQ+A++  E F      TG+++TK+DG ARGG
Sbjct: 217 Q-ARNIR-----DAVNPDEVLFVIDSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGG 270

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ +   GE ++D + F  +  S+ I G  D
Sbjct: 271 AALSIREVTGKPIMYASTGEKLDDFDVFHPERMSSRILGMGD 312


>gi|328951033|ref|YP_004368368.1| signal recognition particle protein [Marinithermus hydrothermalis
           DSM 14884]
 gi|328451357|gb|AEB12258.1| signal recognition particle protein [Marinithermus hydrothermalis
           DSM 14884]
          Length = 432

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 141/305 (46%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQ----KIVEELLT 72
           F + S +L+E +  +    R+ +     V  E+   L+ +D+   VA+    ++ E+ + 
Sbjct: 2   FENLSRRLRESLDKLRGRGRITEADLKQVMREIRMSLLEADVNFEVAKAFVARVQEKAIG 61

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           ++  + ++    +Y +   ++  L  L   K    +  H  ++  +VG+ G GKTT  GK
Sbjct: 62  QKVLESLTPAEQVYTI---VYNELTDLLGGKAVQPELRHEGNLWFLVGLQGSGKTTTAGK 118

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++     G + +L A DT R AA +QL+I  +R     +           A       +
Sbjct: 119 LARYYKSKGRRPLLVAADTQRPAAREQLRILGERVGVPVLEVADNEPPEVTAQRLKDHLK 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGRL  +  LM  + +   VL       P   L V+DA TGQ AL   +
Sbjct: 179 TDYRDLVIVDTAGRLQIDEPLMEALARQKAVLN------PTETLLVVDAMTGQEALGVSK 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++TK+DG ARGG  +        P+YF G  E +  LEPF     +  I
Sbjct: 233 TFDERIGVTGLVLTKLDGDARGGAALSARFVTGKPIYFAGTSEKLEGLEPFYPDRLAQRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|134082225|emb|CAL00980.1| unnamed protein product [Aspergillus niger]
          Length = 585

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 138/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +ED L+R ++    A ++ E    EL+ K+     SV   L    E  + K+L P S   
Sbjct: 296 MEDHLLRKNVAREAAVRLCEGVQRELVGKKTGNFQSVDAALRSAMESSLRKILTPTSSLD 355

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P +   S RP+VI +VGVNGVGK+T +GK+   +     +V++AA DTFR
Sbjct: 356 LLREIDAVTSPTSKQQSPRPYVISIVGVNGVGKSTNLGKICYFLLQNKYRVLIAACDTFR 415

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A +   A   DV++ID
Sbjct: 416 SGAVEQLRVHA-RNLRELSARENVGEVELYEKGYGKDAANVAKDAVEYGAANHFDVVLID 474

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +         P  +  V +A  G +++ Q   F+   GT  
Sbjct: 475 TAGRRHNDQRLMSSLEKFAKFAN------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 528

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 529 NLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 571


>gi|308162746|gb|EFO65124.1| SRP GTPase [Giardia lamblia P15]
          Length = 530

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/239 (35%), Positives = 116/239 (48%), Gaps = 15/239 (6%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           VQR++  V EL+  ML P   PF     +R +VI+ VG+ G GKTT   K        G 
Sbjct: 77  VQRIV--VQELV-SMLSPERPPFR-PVRNRANVIMFVGLQGAGKTTTCVKFGAYYKRKGW 132

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           +V L   DTFR+ A DQLK         F  S    D   +A +  K       +++I+D
Sbjct: 133 RVGLVCCDTFRTGAFDQLKQNCTAVRLPFYGSYSEKDPVQIAQDGVKHFIGLNFELIILD 192

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           T+GR      L          +K +D    PH  + VLD++ GQ A  Q + F       
Sbjct: 193 TSGRHRQEEALFT-------EMKLIDSAVQPHDHVFVLDSSIGQAAYEQADAFSNAVEIG 245

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            +I+TK+DG +RGGG +  V   K P+ FLG GE I DLE F +  F +V+ G   YG+
Sbjct: 246 SVILTKLDGHSRGGGALAAVSATKAPIVFLGTGEKIEDLEFFDSSRFVSVMLG---YGD 301


>gi|224419142|ref|ZP_03657148.1| signal recognition particle protein [Helicobacter canadensis MIT
           98-5491]
 gi|253828077|ref|ZP_04870962.1| signal recognition particle protein ffh [Helicobacter canadensis
           MIT 98-5491]
 gi|313142648|ref|ZP_07804841.1| signal recognition particle protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511483|gb|EES90142.1| signal recognition particle protein ffh [Helicobacter canadensis
           MIT 98-5491]
 gi|313131679|gb|EFR49296.1| signal recognition particle protein [Helicobacter canadensis MIT
           98-5491]
          Length = 446

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 145/295 (49%), Gaps = 19/295 (6%)

Query: 30  EGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           E   + I+  R  D  +      +EL+  L++SD+   V + ++EE+  K     +  + 
Sbjct: 7   ESFQNAINKIRFQDDEKALKRAIDELKKTLLKSDVHYKVLKHLLEEVEQKTKLAGIGKES 66

Query: 84  VLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            L  + E ++ +L   + P N+ F   S  P ++L+ G+ G GKTT   KL+  +     
Sbjct: 67  FLNALKESLNHIL---TAPGNYGFIFASKPPTIVLMAGLQGSGKTTTTAKLANYLKTRQK 123

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           KV+LAA D  R AA++QL+  + +   DF   E  +          K       DVL++D
Sbjct: 124 KVLLAACDLQRLAAVEQLRQLSHQVEVDFFYEENKTPVEIAKAAKEKAIAGL-YDVLLVD 182

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           +AGRL  +  LM  +  +   +       P+ +  V+D+ +GQ+ ++    FH     +G
Sbjct: 183 SAGRLAIDEALMQELQAIKEAIN------PNEIFYVVDSLSGQDGVKSAATFHEKMNLSG 236

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I++K DG ++GG  + I     IP+ F+GVGE I DLE F+ +   + + G  D
Sbjct: 237 VILSKFDGDSKGGIALSIAQLLGIPLRFIGVGEKIPDLEVFIPERIVSRLMGAGD 291


>gi|219117644|ref|XP_002179613.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408666|gb|EEC48599.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 448

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 138/288 (47%), Gaps = 29/288 (10%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIHKM---- 95
           E+   L+ +D+ V VA  ++E +  +   ++V           + +YD  EL+  M    
Sbjct: 12  EVRRALLDADVNVDVADTLIEGVRARSLGQEVLEGVTAEQQFVKAMYD--ELLDMMGGDS 69

Query: 96  LMPLSK-PFNWDFSH-------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
            +P+S  P N   +         P VIL+ G+ G GKTT  GKL+  + +   KV+L A 
Sbjct: 70  SVPMSDGPSNVPVATLASGTAADPAVILLAGLQGAGKTTAAGKLALFLKEQ-RKVLLVAA 128

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D +R AAI QL++  +    +        D   +     ++A+ +  D +I+DTAGR   
Sbjct: 129 DIYRPAAIKQLQVLGESIGVEVFTKGTDVDPVEIVNAGIQKARDEGYDTVIVDTAGRQVI 188

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           ++ LM  + +M R        +P   L ++DA TGQ A      F +  G TG I+TKMD
Sbjct: 189 DTDLMDELQRMKRA------ASPQETLLIVDAMTGQEAASLTAAFDSAIGLTGAILTKMD 242

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +RGG  + +      P+ F+G GE   DLEPF     ++ I G  D
Sbjct: 243 GDSRGGAAVSVRGVSGKPIKFVGTGEKTADLEPFYPDRMASRILGMGD 290


>gi|228928893|ref|ZP_04091925.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228830700|gb|EEM76305.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 449

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAGRLH +  LM  + K+  V K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LE F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300


>gi|317035358|ref|XP_001396706.2| signal sequence receptor alpha subunit [Aspergillus niger CBS
           513.88]
          Length = 646

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 138/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +ED L+R ++    A ++ E    EL+ K+     SV   L    E  + K+L P S   
Sbjct: 357 MEDHLLRKNVAREAAVRLCEGVQRELVGKKTGNFQSVDAALRSAMESSLRKILTPTSSLD 416

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P +   S RP+VI +VGVNGVGK+T +GK+   +     +V++AA DTFR
Sbjct: 417 LLREIDAVTSPTSKQQSPRPYVISIVGVNGVGKSTNLGKICYFLLQNKYRVLIAACDTFR 476

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A +   A   DV++ID
Sbjct: 477 SGAVEQLRVHA-RNLRELSARENVGEVELYEKGYGKDAANVAKDAVEYGAANHFDVVLID 535

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +         P  +  V +A  G +++ Q   F+   GT  
Sbjct: 536 TAGRRHNDQRLMSSLEKFAKFAN------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 589

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 590 NLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 632


>gi|315425933|dbj|BAJ47583.1| signal recognition particle receptor [Candidatus Caldiarchaeum
           subterraneum]
          Length = 302

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 136/260 (52%), Gaps = 23/260 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV----QRVLYDVSELIHKMLMPLSKPFNWDF- 107
           L+ +D+ V  A  IV  L       DV      + VL    E + K + PL K  + +  
Sbjct: 37  LVEADVAVETADAIVNSLRHTLLEMDVPRFGDREAVL---KEALKKAIEPLIKVADVNLV 93

Query: 108 ---------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
                      RP VIL VG NG GKTT + KL+  +   G  V+LA+ DTFR+ AI+QL
Sbjct: 94  LKRVDEARKQGRPAVILFVGPNGSGKTTTVVKLAHYLRKRGYSVILASADTFRAGAIEQL 153

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +    R     V    G+D AA+A +A  +A + +V+V++IDTAGR   +  L+  + K+
Sbjct: 154 ETLGQRAGFMVVSQSYGADPAAVAVDALNKASSMRVNVVLIDTAGRTELDRGLLEEMRKL 213

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RV+K      P  V+   DA  G  A++Q +MF  V G   +I++K+D  A+GG  I I
Sbjct: 214 KRVVK------PDFVIYTGDALAGNAAVQQAKMFDEVVGIDYVILSKVDADAKGGSAISI 267

Query: 279 VVTHKIPVYFLGVGEGINDL 298
             +   P+ FLGVG+ ++DL
Sbjct: 268 SHSTGKPLLFLGVGQELDDL 287


>gi|90408719|ref|ZP_01216867.1| signal recognition particle protein Ffh [Psychromonas sp. CNPT3]
 gi|90310170|gb|EAS38307.1| signal recognition particle protein Ffh [Psychromonas sp. CNPT3]
          Length = 469

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 13/209 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+L+ G+ G GKTT + KL+  + +   K V++ + D +R AAI QL+  A     +F
Sbjct: 100 PAVLLMAGLQGAGKTTSVAKLALLLKNKEKKSVLVVSADVYRPAAIKQLQTLASEVDVEF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+I      +A  A   A+ K +DV+I+DTAGRLH ++ +M  I          D HA
Sbjct: 160 FPSDISQKPIDIANAAIAHAKKKFIDVVIVDTAGRLHVDTDMMKEIQ---------DLHA 210

Query: 230 ---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA TGQ+A    + F+ +   TG+I+TK DG ARGG  + I      P+
Sbjct: 211 AISPIETLFVVDAMTGQDAANTAKAFNEMLPLTGIILTKADGDARGGAALSIRHITGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F     ++ I G  D
Sbjct: 271 KFIGMGEKVDALEAFHPDRIASRILGMGD 299


>gi|33866152|ref|NP_897711.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH
           8102]
 gi|33639127|emb|CAE08133.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH
           8102]
          Length = 487

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 135/273 (49%), Gaps = 22/273 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLM--------PLSKP 102
           L+ +D+ + V +  V ++  K    +V V+ V  D    +++H+ L+        PL+K 
Sbjct: 38  LLEADVSLPVVKDFVADVREKAVGAEV-VRGVSPDQKFIQVVHEQLVEVMGGDNAPLAKA 96

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                +  P V+L+ G+ G GKTT   KL   + D G + ++   D +R AAI+QLK   
Sbjct: 97  -----AEAPTVVLMAGLQGAGKTTATAKLGLHLKDQGRRALMVGADVYRPAAIEQLKTLG 151

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +   +       +    +A     +A+ +  D L++DTAGRL  ++ +M    +M+R+ 
Sbjct: 152 GQIGVEVFSLGTEAKPEEIAAAGLAKAKEEGFDTLLVDTAGRLQIDTEMME---EMVRIR 208

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             +    P  VL V+D+  GQ A      FH   G TG ++TK+DG +RGG  + I    
Sbjct: 209 TAVQ---PDEVLLVVDSMIGQEAAELTRAFHDQVGITGAVLTKLDGDSRGGAALSIRKVS 265

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 266 GQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298


>gi|42782937|ref|NP_980184.1| signal recognition particle protein [Bacillus cereus ATCC 10987]
 gi|49478411|ref|YP_037906.1| signal recognition particle protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141643|ref|YP_085186.1| signal recognition particle protein [Bacillus cereus E33L]
 gi|118479067|ref|YP_896218.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacillus
           thuringiensis str. Al Hakam]
 gi|217961265|ref|YP_002339833.1| signal recognition particle protein [Bacillus cereus AH187]
 gi|218904975|ref|YP_002452809.1| signal recognition particle protein [Bacillus cereus AH820]
 gi|225865826|ref|YP_002751204.1| signal recognition particle protein [Bacillus cereus 03BB102]
 gi|228916482|ref|ZP_04080048.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228935159|ref|ZP_04097986.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947564|ref|ZP_04109854.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228986988|ref|ZP_04147114.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229092887|ref|ZP_04224021.1| Signal recognition particle protein [Bacillus cereus Rock3-42]
 gi|229123359|ref|ZP_04252563.1| Signal recognition particle protein [Bacillus cereus 95/8201]
 gi|229157421|ref|ZP_04285499.1| Signal recognition particle protein [Bacillus cereus ATCC 4342]
 gi|229186085|ref|ZP_04313254.1| Signal recognition particle protein [Bacillus cereus BGSC 6E1]
 gi|229197955|ref|ZP_04324670.1| Signal recognition particle protein [Bacillus cereus m1293]
 gi|301055335|ref|YP_003793546.1| signal recognition particle protein [Bacillus anthracis CI]
 gi|42738864|gb|AAS42792.1| signal recognition particle protein [Bacillus cereus ATCC 10987]
 gi|49329967|gb|AAT60613.1| signal recognition particle protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975112|gb|AAU16662.1| signal recognition particle protein [Bacillus cereus E33L]
 gi|118418292|gb|ABK86711.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacillus
           thuringiensis str. Al Hakam]
 gi|217066657|gb|ACJ80907.1| signal recognition particle protein [Bacillus cereus AH187]
 gi|218538723|gb|ACK91121.1| signal recognition particle protein [Bacillus cereus AH820]
 gi|225787793|gb|ACO28010.1| signal recognition particle protein [Bacillus cereus 03BB102]
 gi|228585534|gb|EEK43637.1| Signal recognition particle protein [Bacillus cereus m1293]
 gi|228597261|gb|EEK54912.1| Signal recognition particle protein [Bacillus cereus BGSC 6E1]
 gi|228626148|gb|EEK82897.1| Signal recognition particle protein [Bacillus cereus ATCC 4342]
 gi|228660135|gb|EEL15771.1| Signal recognition particle protein [Bacillus cereus 95/8201]
 gi|228690509|gb|EEL44292.1| Signal recognition particle protein [Bacillus cereus Rock3-42]
 gi|228772766|gb|EEM21206.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812084|gb|EEM58415.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824524|gb|EEM70329.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228843061|gb|EEM88143.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300377504|gb|ADK06408.1| signal recognition particle protein [Bacillus cereus biovar
           anthracis str. CI]
 gi|324327742|gb|ADY23002.1| signal recognition particle protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 449

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAGRLH +  LM  + K+  V K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LE F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300


>gi|311108979|ref|YP_003981832.1| signal recognition particle protein [Achromobacter xylosoxidans A8]
 gi|310763668|gb|ADP19117.1| signal recognition particle protein [Achromobacter xylosoxidans A8]
          Length = 467

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 140/292 (47%), Gaps = 36/292 (12%)

Query: 48  ELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           E+   L+ +D+ + V ++ V    E+ L +  A  +S  + L  V   +HK L  L    
Sbjct: 33  EVRMALLEADVALPVVREFVARVKEKALGEEVASSLSPGQALVGV---VHKELTSL---M 86

Query: 104 NWDFS----------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAG----------LKVM 143
             D              P VIL+ G+ G GKTT  GKL++ +S+             KV+
Sbjct: 87  GGDLGADSGELSLAVQPPAVILMAGLQGAGKTTTTGKLARWLSEGQHTQHGRKTGKKKVL 146

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           + + D +R AAIDQLK  A +   DF+ S+       +A  A   A+    DVLI+DTAG
Sbjct: 147 VVSADVYRPAAIDQLKSVAAQVGVDFLPSDPSQKPEDIARNAVDHARRHHYDVLILDTAG 206

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RL  +  +M    + IR L   D   P   L V+DA  GQ+A+     F      TG+++
Sbjct: 207 RLGIDEAMM----REIRALH--DLVKPVETLFVVDAMQGQDAVNTARAFAEALPLTGVVL 260

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TK+DG ARGG  + +      P+ F+GV E ++ LEPF  +  +  + G  D
Sbjct: 261 TKLDGDARGGAALSVRHVTGKPLKFVGVSEKLDGLEPFYPERMAQRVLGMGD 312


>gi|254432051|ref|ZP_05045754.1| signal recognition particle protein [Cyanobium sp. PCC 7001]
 gi|197626504|gb|EDY39063.1| signal recognition particle protein [Cyanobium sp. PCC 7001]
          Length = 494

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 144/282 (51%), Gaps = 18/282 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100
           +G  +++   L+ +D+ + V +  V+E+  K    +V V+ +  D    +++H+ L+   
Sbjct: 28  EGALKDVRRALLEADVSLPVVKDFVDEVRRKAVGAEV-VRGISPDQKFIQVVHEQLVDTM 86

Query: 101 KPFNWDFSH-----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              N   +       P V+L+ G+ G GKTT   KL   + + G + +L   D +R AAI
Sbjct: 87  GGENAPLAAGGKPGEPSVVLMAGLQGAGKTTATAKLGLHLKEQGRRALLVGADVYRPAAI 146

Query: 156 DQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           +QL+    +   +     +G++A    +A    ++A+ +  D +++DTAGRL  ++ +M 
Sbjct: 147 EQLRTLGGQIGVEVFS--LGTEARPEDIAAAGVEKAREEGFDTVLVDTAGRLQIDTSMME 204

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              +M+R+ + + P     VL V+D+  GQ A      FH   G TG ++TK+DG +RGG
Sbjct: 205 ---EMVRIREAVQPD---EVLLVVDSMIGQEAAELTRAFHEQVGITGAVLTKLDGDSRGG 258

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 259 AALSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRILGMGD 300


>gi|300854474|ref|YP_003779458.1| putative signal recognition particle GTPase [Clostridium
           ljungdahlii DSM 13528]
 gi|300434589|gb|ADK14356.1| predicted signal recognition particle GTPase [Clostridium
           ljungdahlii DSM 13528]
          Length = 449

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 163/316 (51%), Gaps = 40/316 (12%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F   + KL+E +  +     +S + + D +RE ++  L+ +D+   V +  ++ +  K  
Sbjct: 3   FEGLASKLQETLKKLRGKGKLSEKDIKDAMRE-VKLALLEADVNYKVVKNFIKSVSEKCM 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E +  ++        ++ S+   VI++VG+ G GKTT+ GK
Sbjct: 62  GEEVLKSLTPAQQVIKIVNEELTLLMGKNESGIEYN-SNGLTVIMLVGLQGAGKTTMCGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKI-----------WADRTSADFVCSEIGSDAA 179
           L+ ++     K +LAA D +R AAI QL++             D+ +A  +C        
Sbjct: 121 LALQLRKKNKKPLLAACDIYRPAAIKQLQVVGKEIDVPVFSMGDKVTAVDICK------G 174

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           AL Y     A+   ++V+IIDTAGRL  +  LM   G++ ++ + ++P     ++ V+DA
Sbjct: 175 ALEY-----AKNNNLNVVIIDTAGRLQIDEELM---GELKQIKENINPD---EIMLVVDA 223

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ+A+     F+     +G+I+TK+DG  RGG  + I      P+ F+G+GE +NDL+
Sbjct: 224 MTGQDAVNVASSFNEQLNISGVILTKLDGDTRGGAALSIRAMTDKPIKFVGMGEKMNDLQ 283

Query: 300 PFVAKDFSAVITGCLD 315
            F     ++ I G  D
Sbjct: 284 VFYPDRMASRILGMGD 299


>gi|84515969|ref|ZP_01003330.1| Signal recognition particle protein ffh [Loktanella vestfoldensis
           SKA53]
 gi|84510411|gb|EAQ06867.1| Signal recognition particle protein ffh [Loktanella vestfoldensis
           SKA53]
          Length = 496

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 138/274 (50%), Gaps = 12/274 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + VA+  V  +  K   + V+      Q+V+  V + + ++L     P
Sbjct: 33  EVRTALLEADVSLPVARDFVAAVQAKATGQAVTKSITPGQQVVKIVHDELQRVLTGDEDP 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIW 161
                 + P  IL+VG+ G GKTT   KL+K++ +  G KV++A+ DT R AA++QL I 
Sbjct: 93  GALKIDNPPAPILMVGLQGSGKTTTTAKLAKRLKEREGKKVLMASLDTNRPAAMEQLAIL 152

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +   D +    G     +A  A  QA     DV ++DTAGRLH ++ L+A    +   
Sbjct: 153 GMQIGVDTLPIVKGETPVQIAKRAKVQASLGGYDVYMLDTAGRLHIDAELIAQAAAV--- 209

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
               D   P   L V+D  TGQ+A+   + F    G TG+++T+MDG  RGG  + +   
Sbjct: 210 ---RDVANPRETLLVVDGLTGQDAVNVAQEFDDKIGVTGVVLTRMDGDGRGGAALSMRAI 266

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ F+G+GE ++ +E F     +  I G  D
Sbjct: 267 TGKPIRFVGLGEKMDAIETFEPSRIAGRILGMGD 300


>gi|184200705|ref|YP_001854912.1| signal recognition particle protein [Kocuria rhizophila DC2201]
 gi|183580935|dbj|BAG29406.1| signal recognition particle protein [Kocuria rhizophila DC2201]
          Length = 521

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 145/299 (48%), Gaps = 25/299 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLSEADVDATVREIRRALLEADVAVPVVREFTAIVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++  N   +  P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPGQQVVKIVNEELQNVLGGETRRINLAKTG-PTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---------DAAALA 182
            K ++D G K +L A D  R  A+ QLK+  +R        E G+         D   +A
Sbjct: 121 GKWLTDQGHKPVLVASDLQRPNAVTQLKVVGERAGVSVFAPEPGATSESDDPTGDPVKVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +    A++K  DV+I+DTAGRL  +  LM    + IR     D   P  VL V+DA  G
Sbjct: 181 RDGVDFARSKLYDVVIVDTAGRLGIDQALM-NQARDIR-----DAVDPDEVLFVIDAMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           Q+A+   + F      TG++++K+DG ARGG  + +      P+ F   GEG++D E F
Sbjct: 235 QDAVNTAKAFDEGVDFTGVVLSKLDGDARGGAALSVRAVTGKPIMFASTGEGVSDFEQF 293


>gi|113869195|ref|YP_727684.1| signal recognition particle GTPase [Ralstonia eutropha H16]
 gi|113527971|emb|CAJ94316.1| signal recognition particle GTPase [Ralstonia eutropha H16]
          Length = 464

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +   K V+  + D +R AAI QLK  +++  ADF
Sbjct: 108 PAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 167

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+     A +A  A   A+    DVLI+DTAGRL  + ++M  I  +   LK      
Sbjct: 168 FPSQPDQKPADIARAAVDWARKHYHDVLIVDTAGRLGIDELMMQEIAALHAELK------ 221

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+
Sbjct: 222 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGRPIKFV 281

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE ++ LEPF     +  I G  D
Sbjct: 282 GVGEKLDGLEPFYPDRMAQRILGMGD 307


>gi|300811712|ref|ZP_07092186.1| signal recognition particle protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497288|gb|EFK32336.1| signal recognition particle protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 476

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 160/321 (49%), Gaps = 32/321 (9%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E+LS   +L K   + + K K    DI ++ R       E+   L+ +D+   V + 
Sbjct: 1   MAFENLS--ERLQKALRNLTGKGKISEEDINAASR-------EIRLALLEADVNFKVVKD 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILV 116
            ++ +  +   ++V       Q+V+  V+E + KM+    + L+K       H P VI++
Sbjct: 52  FIKTIKKRALGQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-----PHIPTVIMM 106

Query: 117 VGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLK-IWADRTSADFVCSEI 174
           VG+ G GKTT +GKL+ + M +   +  L AGD +R AAIDQLK I AD     +   E 
Sbjct: 107 VGLQGTGKTTTVGKLAYRLMKEEKARPFLIAGDIYRPAAIDQLKQIGADLKVPVYSDPEE 166

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            S  A +  +   +A   + D +IIDTAGRL  +  LM  + ++  V        P ++L
Sbjct: 167 KS-VAKIVEDGLAEAAVHRNDYVIIDTAGRLEIDEPLMKELEEVKAV------SQPDNIL 219

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA TGQ A    + F+     TG+I+TK+DG  RGG  + I      P+ F G GE 
Sbjct: 220 LVVDAMTGQAAADVAQTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEK 279

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           + DLE F     ++ I G  D
Sbjct: 280 LTDLEVFHPDRMASRILGMGD 300


>gi|238758266|ref|ZP_04619445.1| Signal recognition particle protein [Yersinia aldovae ATCC 35236]
 gi|238703596|gb|EEP96134.1| Signal recognition particle protein [Yersinia aldovae ATCC 35236]
          Length = 453

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT + KL K + +   K V++ + D +R AAI QL+  A+   
Sbjct: 97  AQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S+       +   A +QA+ K  DVLI+DTAGRLH +  +M  I ++        
Sbjct: 157 IDFFPSDAQEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQI-------- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + I     
Sbjct: 209 -HAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 268 KPIKFLGVGEKSDALEPFHPDRVASRILGMGD 299


>gi|258570483|ref|XP_002544045.1| hypothetical protein UREG_03562 [Uncinocarpus reesii 1704]
 gi|237904315|gb|EEP78716.1| hypothetical protein UREG_03562 [Uncinocarpus reesii 1704]
          Length = 579

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 38/282 (13%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTK------------RYAKDVSVQRVLYDVSEL- 91
           +ED L++ ++    A ++ E    EL+ K            R A + S+Q++L   S L 
Sbjct: 290 MEDHLLKKNVAREAAVRLCEGVEQELVGKKTGSFQSIDAALRSAMESSLQKILTPTSSLD 349

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           + + +  ++ P +   + RP+VI +VGVNGVGK+T + K+   +     KV++AA DTFR
Sbjct: 350 LLREIEAVTSPHDRQQARRPYVISIVGVNGVGKSTNLSKICFFLLQNNYKVLIAACDTFR 409

Query: 152 SAAIDQLKIWA-------DRTSA---DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           S A++QL++ A       +R +    +      G DAA +A +A   A +   DV++IDT
Sbjct: 410 SGAVEQLRVHARNLKELSERENVGHIELYEKGYGKDAANVAKDAVAYAASSNFDVVLIDT 469

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT--- 258
           AGR HN+  LM+ + K  +        AP  +  V +A  G +++ Q   F+   GT   
Sbjct: 470 AGRRHNDQRLMSSLEKFAKFA------APDKIFMVGEALVGTDSVMQARNFNQAFGTGRG 523

Query: 259 -TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
             G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 524 LDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 565


>gi|254485997|ref|ZP_05099202.1| signal recognition particle protein [Roseobacter sp. GAI101]
 gi|214042866|gb|EEB83504.1| signal recognition particle protein [Roseobacter sp. GAI101]
          Length = 501

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 140/269 (52%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+ +  K   + V+      Q+V+  V + +  +L    +P     
Sbjct: 38  LLEADVSLPVARDFVKAVQDKATGQAVTKSITPGQQVVKIVHDALIDVLRGEGEPGALKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT   KL+K++ D  G +V++A+ D  R AA++QL I   +  
Sbjct: 98  DNAPAPILMVGLQGSGKTTTTAKLAKRLKDRDGKRVLMASLDVNRPAAMEQLAILGVQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G +   +A  A  QA     DV ++DTAGRL  +  LM  + + +R     D
Sbjct: 158 VDTLPIVKGENPVQIAKRAKTQAAMGGYDVYMLDTAGRLSIDEELMQQV-EAVR-----D 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ+A++  E F+   G +G+++T+MDG  RGG  + +      P+
Sbjct: 212 VANPRETLLVVDGLTGQDAVQTAENFNDRIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F  +  +  I G  D
Sbjct: 272 KFVGLGEKMDALETFEPERIAGRILGMGD 300


>gi|281206952|gb|EFA81136.1| signal recognition particle 54 kDa subunit [Polysphondylium
           pallidum PN500]
          Length = 504

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 141/280 (50%), Gaps = 16/280 (5%)

Query: 43  DGVREELEDLLIRSDIG----VAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKML 96
           D + +E+ + L R+D+     + + + I E+L     A  ++ +R++  V   ELI K+L
Sbjct: 29  DTLLKEVGNALSRADVSLKLIIQMRKNIKEQLKLDAMAAGLNKRRIIKKVVFDELI-KLL 87

Query: 97  MPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
            P   P  W  +  + ++I+ VG+ G GKTT + KL+      G    +   DTFR+ A 
Sbjct: 88  DPGVAP--WKPTKGKSNIIMFVGLQGAGKTTSVTKLASFYKRKGWATAMVCADTFRAGAF 145

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           DQLK  A +    F  S+   D  A+A +     +    +++I+DT+GR      L   +
Sbjct: 146 DQLKHNATKAKIPFYGSDTDRDPVAVAKKGVDIFKKDGAEIIIVDTSGRHKQEEELFKEM 205

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            ++  V+K      P +V+ V+D++ GQ A  Q   F        +I+TKMDG ++GGG 
Sbjct: 206 KEIETVVK------PDNVIFVMDSSIGQAAFDQATAFKNSVSVGSVIITKMDGNSKGGGA 259

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I  V   K P+ F+G GE I DL+ F A  F + + G  D
Sbjct: 260 ISAVAATKSPIIFIGTGEHIPDLDLFDASSFVSKLLGMGD 299


>gi|307183983|gb|EFN70554.1| Signal recognition particle 54 kDa protein [Camponotus floridanus]
          Length = 506

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+VI+ VG+ G GKTT   KL+        K  L   DTFR+ A DQ+K  A +    F
Sbjct: 100 RPNVIMFVGLQGSGKTTSCTKLAYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D  A+A +     + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEVDPVAIAQDGVDMFKKEGYEIIIVDTSGRHKQEESLFE---EMLQVANAVQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DAT GQ    Q + F        +I+TK+DG A+GGG +  V   + PV F+
Sbjct: 216 --NIIFVMDATIGQACEAQAKAFKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFV 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+DLEPF  K F + + G  D
Sbjct: 274 GTGEHIDDLEPFKTKPFISKLLGMGD 299


>gi|323495854|ref|ZP_08100922.1| signal recognition particle protein [Vibrio sinaloensis DSM 21326]
 gi|323319070|gb|EGA72013.1| signal recognition particle protein [Vibrio sinaloensis DSM 21326]
          Length = 462

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 152/307 (49%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D +++ L ++   L+ +D+ + V +  ++ +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFIKRV--KEAA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P VIL+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQTELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A     DF  S        +A  A   
Sbjct: 119 KLSKLLKEREKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSADQKPIDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVL++DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A   
Sbjct: 179 AKKKFYDVLVVDTAGRLAIDEQMMGEIQDLHSAIN------PVETLFVVDAMTGQDAANT 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++
Sbjct: 233 AKAFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|70984356|ref|XP_747692.1| signal sequence receptor alpha subunit [Aspergillus fumigatus
           Af293]
 gi|66845319|gb|EAL85654.1| signal sequence receptor alpha subunit, putative [Aspergillus
           fumigatus Af293]
 gi|159122478|gb|EDP47599.1| signal sequence receptor alpha subunit, putative [Aspergillus
           fumigatus A1163]
          Length = 649

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 139/283 (49%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIG----VAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +ED L++ ++     V + Q +  EL+ K+     SV   L    E  + K+L P S   
Sbjct: 360 MEDHLLKKNVAREAAVRLCQGVQRELVGKKTGNFQSVDAALRSAMESSLRKILTPTSSLD 419

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P +   + RP+VI +VGVNGVGK+T +GK+   +     +V++AA DTFR
Sbjct: 420 LLREIDAVRSPTSKGQAPRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRVLIAACDTFR 479

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A +   A   DV++ID
Sbjct: 480 SGAVEQLRVHA-RNLKELSTRENAGEVELYEKGYGKDAANVAKDAVEYGAANHFDVVLID 538

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +  K      P  +  V +A  G +++ Q   F+   GT  
Sbjct: 539 TAGRRHNDQRLMSSLEKFAKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 592

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 593 NLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 635


>gi|163858644|ref|YP_001632942.1| hypothetical protein Bpet4326 [Bordetella petrii DSM 12804]
 gi|163262372|emb|CAP44675.1| ffh [Bordetella petrii]
          Length = 469

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 112/215 (52%), Gaps = 16/215 (7%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG----------LKVMLAAGDTFRSAAIDQLKI 160
           P +IL+ G+ G GKTT  GKL + ++  G           KV++ + D +R AAIDQLK 
Sbjct: 104 PAIILMAGLQGAGKTTTTGKLGRWLAQGGHTQNGRNTGKKKVLVVSADVYRPAAIDQLKT 163

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A++   DF+ S+       +A  A   A+    DVLI+DTAGRL  +  +M    + IR
Sbjct: 164 VAEQAGIDFLPSDPSQKPEDIARNAVDHARRHHYDVLILDTAGRLGIDEAMM----REIR 219

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           VL   D   P   L V+DA  GQ+A+     F      TG+++TK+DG ARGG  + +  
Sbjct: 220 VLH--DLVRPVETLFVVDAMQGQDAVNTARAFADALPLTGVVLTKLDGDARGGAALSVRH 277

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+ F+GV E ++ LEPF     +  + G  D
Sbjct: 278 VTGKPLKFVGVSEKLDGLEPFHPDRMAQRVLGMGD 312


>gi|225442910|ref|XP_002264159.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 495

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 7/223 (3%)

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           KML P  KP       +  V++ VG+ G GKTT   K +      G K  L   DTFR+ 
Sbjct: 85  KMLDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQLK  A +    F  S + SD   +A E  ++ + +  D++I+DT+GR    + L  
Sbjct: 144 AFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFE 203

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++    +      P  V+ V+D++ GQ A  Q + F        +I+TKMDG A+GG
Sbjct: 204 EMRQVSEATR------PDLVIFVMDSSIGQAAFDQAQAFRQSVAVGAVIITKMDGHAKGG 257

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           G +  V   K PV F+G GE +++ E F  K F + + G  D+
Sbjct: 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300


>gi|119953471|ref|YP_945680.1| signal recognition particle, subunit FFH/SRP54 [Borrelia turicatae
           91E135]
 gi|119862242|gb|AAX18010.1| signal recognition particle, subunit FFH/SRP54 [Borrelia turicatae
           91E135]
          Length = 449

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 150/293 (51%), Gaps = 26/293 (8%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH- 93
           +I+ + ++  + + +++ LI +D+ + V ++ +  ++ +  AK + V R +   S+ I  
Sbjct: 21  VINEKNIEAAI-DTIKNALIEADVNLRVVRRFINSVVEE--AKGIKVLRNIDPKSQFIKI 77

Query: 94  ---KMLMPLS--------KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
              K++  L          P N     +   IL++G+ G GKTT   KL+ ++     KV
Sbjct: 78  VNDKLINFLGDKHSELVLSPVN-----KLSCILMLGLQGSGKTTTCAKLAMRLKSENRKV 132

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA++QLKI   +        E  SD   +  ++ + A+ +  D +IIDT 
Sbjct: 133 LLVAADTFRAAAVNQLKILGMQVGVSVFSLEGESDPIKVVKKSIEYAKTELFDTVIIDTR 192

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL    +L+  I ++ +++      AP   + V DA TGQ+A+   + F+   G TG+I
Sbjct: 193 GRLEVEDLLLREIIEIKKIV------APTETILVADAMTGQSAVNIAKEFNDSVGITGVI 246

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            TK D  ARGG ++ +      P+ F+GVGE   DL+ F     ++ I G  D
Sbjct: 247 FTKFDSDARGGAILSLKTICGAPIKFVGVGEKPEDLDVFYPDRVASRILGMGD 299


>gi|15827854|ref|NP_302117.1| signal recognition particle protein [Mycobacterium leprae TN]
 gi|221230331|ref|YP_002503747.1| signal recognition particle protein [Mycobacterium leprae Br4923]
 gi|3334343|sp|O33013|SRP54_MYCLE RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|2251154|emb|CAB10614.1| Ffh protein [Mycobacterium leprae]
 gi|13093406|emb|CAC30573.1| signal recognition particle protein [Mycobacterium leprae]
 gi|219933438|emb|CAR71717.1| signal recognition particle protein [Mycobacterium leprae Br4923]
          Length = 521

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 150/311 (48%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   I  +    RL D        E+   L  +D+ + V +  V  +  +   
Sbjct: 2   FESLSNRLTGVIQGLRGKGRLTDADIEATTREIRLALFEADVSLPVVRAFVHRIKERARG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++   +  +  P V+++ G+ G GKTT+ GKL
Sbjct: 62  TEVSAALNPAQQIVKIVNEELIGILGGETRQLAFAKTP-PTVVMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184
           + ++   G   +L A D  R AA++QL++  +R          G+       D  A+A  
Sbjct: 121 AVRLRRQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPDSGPGDPVAVASA 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA  G +   +       P  VL VLDA  GQ+
Sbjct: 181 GLVEARAKHFDVVIVDTAGRLGIDDELMAQAGAIREAIN------PDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+     F A  G TG+++TK+DG ARGG  + +     +P+ F   GE ++D + F   
Sbjct: 235 AVTTAAAFGAGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFATTGEKLDDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|331701481|ref|YP_004398440.1| signal recognition particle protein [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128824|gb|AEB73377.1| signal recognition particle protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 479

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 121/235 (51%), Gaps = 8/235 (3%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGL 140
           Q+++  V E + K +   + P N      P +I++ G+ G GKTT  GKL+ K+ ++   
Sbjct: 73  QQIVKIVDEELTKTMGEEAVPLNK-AEKIPTIIMMSGLQGAGKTTTAGKLALKLKNEQNA 131

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           + +L A D +R AAIDQL+    +            D   +A    +QA+    D +IID
Sbjct: 132 RPLLIADDIYRPAAIDQLQTVGQQIDVPVFSLGTDVDPVEIAKRGVEQAKQDHNDYVIID 191

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  LM  +  +       D   P+ +L V+DA TGQNA+   E F+     TG
Sbjct: 192 TAGRLQIDEKLMDELSHI------KDAVEPNEILLVIDAMTGQNAVATAEGFNKTLDVTG 245

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +++TK+DG  RGG  + I    + P+ F+G GE ++DL+ F     ++ I G  D
Sbjct: 246 VVLTKLDGDTRGGAALSIRAVTQKPIKFVGQGEKMSDLDVFYPDRMASRILGMGD 300


>gi|153818942|ref|ZP_01971609.1| cell division protein FtsY [Vibrio cholerae NCTC 8457]
 gi|126510504|gb|EAZ73098.1| cell division protein FtsY [Vibrio cholerae NCTC 8457]
          Length = 120

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 79/111 (71%)

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q ++F  V
Sbjct: 1   MVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDV 60

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           A  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F
Sbjct: 61  APITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEF 111


>gi|303230196|ref|ZP_07316964.1| signal recognition particle protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515122|gb|EFL57096.1| signal recognition particle protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 450

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 30/281 (10%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML-------MPLS 100
           L+ +D+   VA+  V+ +  K   ++V       Q V+  V++ +  +L       M  S
Sbjct: 39  LLEADVNFMVAKDFVKSIKEKALGEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMISS 98

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           KP        P +I++VG+ G GKTT  GKL+  +   G   ML A D +R AAI QL++
Sbjct: 99  KP--------PTIIMLVGLQGAGKTTTAGKLAVYLRKQGKHPMLVAADVYRPAAIKQLQV 150

Query: 161 WADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
              +        E  G++   +A  A +Q+     DV+IIDTAGRL  + +LM  +  + 
Sbjct: 151 VGKQIDIPVFADETPGANPVDIARRAVEQSTHMLKDVVIIDTAGRLAIDEVLMDELSNIK 210

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
             ++      PH +L V+D+  GQ+A+   + F+   G  G+I+TK+DG ARGG  + I 
Sbjct: 211 AAVR------PHEILLVVDSMIGQDAVTTAQTFNEKLGVDGVILTKLDGDARGGAALSIK 264

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320
               +P+ F GV E ++  + F     ++ I   LD G+ K
Sbjct: 265 AVTGLPIKFTGVSEKMDGFDVFYPDRMASRI---LDLGDFK 302


>gi|254446931|ref|ZP_05060398.1| signal recognition particle protein [gamma proteobacterium
           HTCC5015]
 gi|198263070|gb|EDY87348.1| signal recognition particle protein [gamma proteobacterium
           HTCC5015]
          Length = 461

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 162/309 (52%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + ++    RL +D +++ L D+   L+ +D+ + V    V++ + +   
Sbjct: 2   FDNLSGRLGQVVKNMTGQGRLTEDNIKDALRDVRMALLEADVALPV----VKDFVARVKE 57

Query: 77  KDVSVQRVLYDVS------ELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTV 127
           + + V+ V+  V       ++++  L+ L    N      +  P  +L+ G+ G GKTT 
Sbjct: 58  RAIGVE-VIESVKPGQAFIKVVNDELVTLMGEANESLDLAAKPPATVLMAGLQGAGKTTS 116

Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           +GKL+K + +    KVM+ + D +R AAIDQL+  A++    F  S       A+A  A 
Sbjct: 117 VGKLAKHLKEREKKKVMVVSCDVYRPAAIDQLQTLAEQVDVAFFPSTTEQKPEAIAQAAL 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+ + +DVL+IDTAGRLH ++ +M  I  +   ++      P   L V+DA TGQ+A 
Sbjct: 177 AEARKQFIDVLLIDTAGRLHIDADMMGEIQSLHSAVE------PTETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+I+TK DG ARGG  + +      P+ F+G+GE I  L+PF     
Sbjct: 231 NTAKAFNDALPLTGVILTKADGDARGGAALSVRQITGKPIKFIGMGEKIQALDPFHPDRM 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|323340725|ref|ZP_08080977.1| signal recognition particle protein [Lactobacillus ruminis ATCC
           25644]
 gi|323091848|gb|EFZ34468.1| signal recognition particle protein [Lactobacillus ruminis ATCC
           25644]
          Length = 493

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 143/279 (51%), Gaps = 17/279 (6%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL 99
           V  E+   L+ +D+   V +  V+E+  +    +V       Q+++  V+E + K++   
Sbjct: 43  VMREIRLALLEADVNFKVVKDFVKEVKNRAVGAEVLESLTPAQQIVKIVNEELIKVMGES 102

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158
           +   N      P VI++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AA+DQL
Sbjct: 103 AVSLNKS-KKIPTVIMMVGLQGAGKTTTAGKLAYKLKKEENARPLMIAADVYRPAAVDQL 161

Query: 159 KIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           K      S D    E+G+D     +  +  K A+ +K D +IIDTAGRL  +  LM  + 
Sbjct: 162 KTVG--KSIDVPVFELGTDVDPVEIVRQGMKLAEEQKNDYVIIDTAGRLQIDEKLMNELA 219

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           +    +K L    P  +L  +D+ TGQNA+   + F+     TG+++TK+DG  RGG  +
Sbjct: 220 R----IKEL--THPDEILLTVDSMTGQNAVEVAQGFNDTLDVTGVVLTKLDGDTRGGAAL 273

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I      P+ F+G GE +  L+ F  +  ++ I G  D
Sbjct: 274 SIRAVTGKPIKFIGQGEKMTALDVFYPERMASRILGMGD 312


>gi|163941583|ref|YP_001646467.1| signal recognition particle protein [Bacillus weihenstephanensis
           KBAB4]
 gi|229013028|ref|ZP_04170193.1| Signal recognition particle protein [Bacillus mycoides DSM 2048]
 gi|229061448|ref|ZP_04198793.1| Signal recognition particle protein [Bacillus cereus AH603]
 gi|229134653|ref|ZP_04263462.1| Signal recognition particle protein [Bacillus cereus BDRD-ST196]
 gi|229168584|ref|ZP_04296307.1| Signal recognition particle protein [Bacillus cereus AH621]
 gi|163863780|gb|ABY44839.1| signal recognition particle protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228614990|gb|EEK72092.1| Signal recognition particle protein [Bacillus cereus AH621]
 gi|228648699|gb|EEL04725.1| Signal recognition particle protein [Bacillus cereus BDRD-ST196]
 gi|228717871|gb|EEL69519.1| Signal recognition particle protein [Bacillus cereus AH603]
 gi|228748282|gb|EEL98142.1| Signal recognition particle protein [Bacillus mycoides DSM 2048]
          Length = 449

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAGRLH +  LM  + K+  V K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMGELAKVKEVAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ +E F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300


>gi|297539516|ref|YP_003675285.1| signal recognition particle protein [Methylotenera sp. 301]
 gi|297258863|gb|ADI30708.1| signal recognition particle protein [Methylotenera sp. 301]
          Length = 454

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 145/286 (50%), Gaps = 15/286 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD---VSELI 92
           ++   + D +RE +   L+ +D+ + V ++ + ++  K+ A+   V + L     V +++
Sbjct: 22  LTEENISDAMRE-VRMALLEADVALPVVKEFIAQV--KQRAQGQEVLQSLTPGQAVIQVV 78

Query: 93  HKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           H  L  L    N   +     P +IL+ G+ G GKTT   KL+K + +   KV+LA+ D 
Sbjct: 79  HDELTELMGKANVGLNLAAVAPAIILMAGLQGSGKTTTSAKLAKLLKEQKKKVLLASADV 138

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A +   D   S        +A  A   A+    DV+I DTAGRL  + 
Sbjct: 139 YRPAAIEQLKTLAKQLDVDCFDSNATQKPLDIAAAALDFAKRGYYDVIIFDTAGRLGIDE 198

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +MA I  +  +L       P   L V+DA  GQ+A+   + F      TG+I+TK+DG 
Sbjct: 199 AMMAEIKALHTLLN------PIETLFVVDAMQGQDAVNTAKAFGDTLPLTGVILTKLDGD 252

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F+GV E ++ LEPF  +  ++ I G  D
Sbjct: 253 SRGGAALSVRHITGKPIKFVGVSEKVDGLEPFHPERMASRILGMGD 298


>gi|87122825|ref|ZP_01078696.1| signal recognition particle protein [Marinomonas sp. MED121]
 gi|86161877|gb|EAQ63171.1| signal recognition particle protein [Marinomonas sp. MED121]
          Length = 422

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 133/269 (49%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  ++ +  +    +VS      Q  L  V + + K++   +   N   
Sbjct: 3   LLEADVALPVVKAFIDSVKERAVGTEVSKSLSPGQVFLKIVKQELEKVMGEANDELNLK- 61

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL++ + +   K V + + D +R AAI QL+  A+   
Sbjct: 62  AKPPAVILLAGLQGAGKTTSAAKLARYLKERHKKSVAVVSADVYRPAAIKQLQTLANEIG 121

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF+ SE       +A  A   A+    DVLI+DTAGRL  +  +MA I  +   +    
Sbjct: 122 VDFIESEASQKPIDIANNAIDVARKSHKDVLILDTAGRLAIDDDMMAEIKALHTAID--- 178

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA TGQ+A    + F  V   TG+++TK DG ARGG  + +      P+
Sbjct: 179 ---PVETLFVVDAMTGQDAANTAKAFGDVLPLTGVVLTKTDGDARGGAALSVRHITGKPI 235

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLGVGE    LEPF     ++ I G  D
Sbjct: 236 KFLGVGEKTEALEPFHPDRLASRILGMGD 264


>gi|303231613|ref|ZP_07318337.1| signal recognition particle protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513730|gb|EFL55748.1| signal recognition particle protein [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 450

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 30/281 (10%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML-------MPLS 100
           L+ +D+   VA+  V+ +  K   ++V       Q V+  V++ +  +L       M  S
Sbjct: 39  LLEADVNFMVAKDFVKSIKEKALGEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMISS 98

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           KP        P +I++VG+ G GKTT  GKL+  +   G   ML A D +R AAI QL++
Sbjct: 99  KP--------PTIIMLVGLQGAGKTTTAGKLAVYLRKQGKHPMLVAADVYRPAAIKQLQV 150

Query: 161 WADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
              +        E  G++   +A  A +Q+     DV+IIDTAGRL  + +LM  +  + 
Sbjct: 151 VGKQIDIPVFADETPGANPVDIARRAVEQSTHMLKDVVIIDTAGRLAIDEVLMDELSNIK 210

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
             ++      PH +L V+D+  GQ+A+   + F+   G  G+I+TK+DG ARGG  + I 
Sbjct: 211 AAVR------PHEILLVVDSMIGQDAVTTAQTFNEKLGVDGVILTKLDGDARGGAALSIK 264

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320
               +P+ F GV E ++  + F     ++ I   LD G+ K
Sbjct: 265 AVTGLPIKFTGVSEKMDGFDVFYPDRMASRI---LDLGDFK 302


>gi|330507723|ref|YP_004384151.1| signal sequence recognition 54 kDa protein [Methanosaeta concilii
           GP-6]
 gi|328928531|gb|AEB68333.1| Signal sequence recognition 54 kDa protein [Methanosaeta concilii
           GP-6]
          Length = 445

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 146/296 (49%), Gaps = 20/296 (6%)

Query: 28  LKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY-AKDVSVQ 82
           L+  +  I S+ ++D    D    E++  L+++D+ V +  ++   + ++    K     
Sbjct: 10  LRNALKKIASANKIDKALVDEAVREIQRALLQADVNVKLVMQLSNTIKSRALDEKPAPGM 69

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
                V  ++++ L+ L      D   +   I++VG+ G GKTT   KL+      GL+ 
Sbjct: 70  NPREHVINIVYQELINLVGR-GADIPLKKQNIMLVGLQGSGKTTTAAKLATFFQRKGLRT 128

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
            +   DTFR+ A DQLK   ++    F   +  +DA A+A    +    KK D+ I+DTA
Sbjct: 129 AVICADTFRAGAYDQLKALCEKQGIFFYGEKGNTDAPAVARNGLEAT--KKYDIRIVDTA 186

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           GR H      A  G +I+ +K  D HA       L V+DA  GQ A  Q + F+     T
Sbjct: 187 GR-H------ALEGDLIQEMK--DIHAVVNADQKLLVMDAALGQQASEQAKAFNEAVNIT 237

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G+I+TK+DGTA+GGG +  V   K  V F+GVGE   DLE F A  F + + G  D
Sbjct: 238 GVIITKLDGTAKGGGALSAVAETKTSVAFIGVGETPADLERFEADRFISRMLGMGD 293


>gi|295099000|emb|CBK88089.1| signal recognition particle subunit FFH/SRP54 (srp54) [Eubacterium
           cylindroides T2-87]
          Length = 471

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 21/293 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L + I +I    +L +  + E L+++   L+ +D+   V ++ VE +  K   
Sbjct: 3   FESLSERLNKAIKNISGQGKLTEKNMNEMLKEVRLSLLEADVNYNVVKEFVENVKEKALG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V + I  +L       N+        +++VG+ G GKTT   K+
Sbjct: 63  QEVMDSLNPGQMVVKIVRDEIQTLLGEEDAKINFK-KQGITTLMMVGLQGTGKTTASAKI 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL--AYEAFKQ 188
           ++        +V+L A D  R AAI+QL+      S D     +G+   A+  A +A + 
Sbjct: 122 ARYCKQKLAKRVLLVACDVVRPAAIEQLQTLG--KSIDIEVFTLGAQTPAVETARQAMRY 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A  ++ D++I DTAGRLH +  LM  + +M  ++K      P  +L  +DA TGQ+ +  
Sbjct: 180 AADRQKDLVIFDTAGRLHIDDELMNELSEMKELVK------PDDILLTVDAMTGQDIVTV 233

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + F+     TGL++TKMDG ARGGGL+ +     +PV F+  GE + DLE F
Sbjct: 234 AKEFNERLSITGLVVTKMDGDARGGGLLSVRSITNVPVLFVSSGEKVEDLEEF 286


>gi|58584310|ref|YP_197883.1| Signal recognition particle GTPase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58418626|gb|AAW70641.1| Signal recognition particle GTPase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 447

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 153/293 (52%), Gaps = 13/293 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+   S   KLK     IIS    +  +RE +   LI +D+ + VA+K + ++  
Sbjct: 1   MFKSLTESLNSVFNKLKG--KSIISEDDFNLAIRE-IRIALIEADVSLEVAKKFINDIKD 57

Query: 73  K----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           K    +  K VS  +++  V +     ++ L K      ++ P VI++VG+ G GKTT  
Sbjct: 58  KVIGEKVIKSVSPAQMIIKVVQDNLITILGLEKSDLNLGANPPAVIMMVGLQGAGKTTTS 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ K+     KVMLA+ D +R AA  QL++   +     + +       A+   A   
Sbjct: 118 GKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDIQTLSTVTDEKPTAITKRALAA 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DVLI+DTAGRLH +  +M      ++ +K++   +P  V+ V DA  GQ+A+  
Sbjct: 178 AKNDNYDVLILDTAGRLHIDDNMM----NELKTVKKI--ASPAEVILVADAMIGQDAVNI 231

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + F+   G TG+I+T++DG ARGG  + + +    P+ F+  GE ++DL+ F
Sbjct: 232 AKSFNETIGVTGIILTRVDGDARGGAALSMKMVTNCPIKFIACGEKLSDLDDF 284


>gi|88809131|ref|ZP_01124640.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH
           7805]
 gi|88787073|gb|EAR18231.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH
           7805]
          Length = 489

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 143/280 (51%), Gaps = 16/280 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLS 100
           +G  +++   L+ +D+ + V +  V ++  K    DV V+ V  D    +++H+ L+ + 
Sbjct: 28  EGALKDVRRALLEADVSLPVVKDFVADVREKAVGSDV-VRGVSPDQKFIQVVHEQLVEVM 86

Query: 101 KPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              N   +     P V+L+ G+ G GKTT   KL   + D G + ++   D +R AAI+Q
Sbjct: 87  GGGNAPLAQAEEAPTVVLMAGLQGAGKTTATAKLGLHLKDQGRRALMVGADVYRPAAIEQ 146

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLIIDTAGRLHNNSILMAGI 215
           LK    +   +     +G+DA   A  A   A+AK+   D L++DTAGRL  ++ +M   
Sbjct: 147 LKTLGGQIGVEVFS--LGADAKPEAIAAAGLAKAKEEGFDTLLVDTAGRLQIDTEMME-- 202

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +M+R+   +    P  VL V+D+  GQ A      FH   G TG ++TK+DG +RGG  
Sbjct: 203 -EMVRIRTAVQ---PDEVLLVVDSMIGQEAAELTRAFHEQVGITGAVLTKLDGDSRGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G GE +  L+PF  +  ++ I G  D
Sbjct: 259 LSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGD 298


>gi|91774877|ref|YP_544633.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methylobacillus flagellatus KT]
 gi|91708864|gb|ABE48792.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methylobacillus flagellatus KT]
          Length = 450

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 153/313 (48%), Gaps = 25/313 (7%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           S  L  + K  +G A  +   +E ITD +   R+           L+ +D+ + V +  V
Sbjct: 6   SNRLQQVVKTLRGHARLT---EENITDAMREVRM----------ALLEADVALPVVKDFV 52

Query: 68  EELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            ++  +   ++V       Q V+  V E + +++   +   N   ++ P ++L+ G+ G 
Sbjct: 53  SQVKERAVGREVLQSLSPGQAVIQVVHEELTRLMGEQNVGLNL-ATNPPAIVLMAGLQGS 111

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT   KL++ +     KV+LA+ D +R AAI+QLK  A     D   S      A +A
Sbjct: 112 GKTTTSAKLARLLKADKKKVLLASADVYRPAAIEQLKTLAKSLEVDCFDSNATQKPADIA 171

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +A   A+    DVLI DTAGRL  +  +MA I ++  +L      +P   L V+DA  G
Sbjct: 172 AQALDFAKRHFYDVLIFDTAGRLGIDEAMMAEIKQLHEIL------SPIETLFVVDAMQG 225

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+     F      TG+++TK+DG ARGG  + +      P+ ++GV E ++ +E F 
Sbjct: 226 QDAVNTARAFGETLPLTGVVLTKLDGDARGGAALSVRHVTGKPIKYIGVSEKVDGIELFH 285

Query: 303 AKDFSAVITGCLD 315
            +  ++ + G  D
Sbjct: 286 PERMASRVLGMGD 298


>gi|110678638|ref|YP_681645.1| signal recognition particle protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109454754|gb|ABG30959.1| signal recognition particle protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 505

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 139/269 (51%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+ +  K   + V+      Q+V+  V + +  +L    +P     
Sbjct: 38  LLEADVSLPVARDFVKAVQEKATGQAVTKSITPGQQVVKIVHDALIDVLKGEGEPGTLKV 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  +L+VG+ G GKTT   KL+K++ +  G +V++A+ D  R AA++QL I   +  
Sbjct: 98  DNPPASVLMVGLQGSGKTTTTAKLAKRLKEKDGKRVLMASLDVNRPAAMEQLAILGAQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G D  A+A  A  QA     DV ++DTAGRL  +  LM  + + +R     D
Sbjct: 158 VDTLPIIAGQDPVAIAKRAKTQAGLGGYDVYMLDTAGRLSIDEELMQQV-EAVR-----D 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             +P   L V+D  TGQ+A+   + F    G +G+++T+MDG  RGG  + +      P+
Sbjct: 212 VASPRETLLVVDGLTGQDAVHTAQNFDERIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F     +  I G  D
Sbjct: 272 KFVGLGEKMDALETFEPDRVAGRILGMGD 300


>gi|159027605|emb|CAO86977.1| ffh [Microcystis aeruginosa PCC 7806]
          Length = 478

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 145/288 (50%), Gaps = 25/288 (8%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D ISS  + + ++E +   L+ +D+ + V +  + E+  +    +V           +++
Sbjct: 20  DKISSANIQETLKE-VRRALLEADVNLQVVKGFIAEVEKQALGAEVISGVNPGQQFIKIV 78

Query: 86  YD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           YD + +++ +  +PL++         P VIL+ G+ G GKTT   KL+  +       ++
Sbjct: 79  YDELVKIMGESNVPLAQA-----DKPPTVILMAGLQGTGKTTATAKLALYLRKQSKSCLM 133

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTA 202
            A D +R AAIDQL     + +      E+GS A    +A +  ++A+   VD +IIDTA
Sbjct: 134 VATDVYRPAAIDQLITLGQQINVPVF--EMGSQANPVDIARQGVEKAKELGVDTVIIDTA 191

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL  ++ +M  + ++ +++       P   L V+DA TGQ A      FH   G TG I
Sbjct: 192 GRLQIDTQMMGELAQIKKIVN------PDDTLLVVDAMTGQEAASLTNTFHQQIGITGAI 245

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +TK+DG  RGG  + +      P+ F+GVGE +  LEPF     ++ I
Sbjct: 246 LTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALEPFYPDRLASRI 293


>gi|325294068|ref|YP_004279932.1| signal recognition particle protein [Agrobacterium sp. H13-3]
 gi|325061921|gb|ADY65612.1| signal recognition particle protein [Agrobacterium sp. H13-3]
          Length = 523

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 116/206 (56%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GK++K+++D   K V++A+ DT R AA +QL+    +T  D 
Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM    +M  + K+ +PH 
Sbjct: 160 LPVIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLML---EMADIKKKSNPH- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              +L V D+ TGQ+A+     F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 216 --EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+GE +N+L+ F  +  +  I G  D
Sbjct: 274 GIGERMNELDEFHPRRIADRILGMGD 299


>gi|301120250|ref|XP_002907852.1| signal recognition particle, putative [Phytophthora infestans
           T30-4]
 gi|262102883|gb|EEY60935.1| signal recognition particle, putative [Phytophthora infestans
           T30-4]
          Length = 511

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 135/274 (49%), Gaps = 12/274 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--VQR---VLYDVSELIHKMLMPLSK 101
           +E+   L+ SD+ V + +++ + +      +D S  V R   +   V + I +ML P ++
Sbjct: 33  KEICGALLESDVQVKLVRQLRDNVKLAVNLEDASSGVNRRRLIQKSVVDQIVQMLEPEAQ 92

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           P+      + +VI+ VG+ G GKTT I K +      G K  +   DTFR+ A DQLK  
Sbjct: 93  PYKMK-KGQSNVIMFVGLQGSGKTTSIAKFAHFYQRKGWKTCMVCADTFRAGAFDQLKQN 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           + +    F  S   +D   +A E   Q +A+  +++++DT+GR    + L A + ++   
Sbjct: 152 STKLRIPFYGSYTEADPVRIAEEGVAQFRAENYELILVDTSGRHKQETDLFAEMREVSAA 211

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           ++      P  V+ V+D+T GQ    Q   F        +I+TK+DG A+GGG +  V  
Sbjct: 212 VQ------PDDVVFVMDSTIGQAVFDQASAFRETVDVGSVIITKLDGHAKGGGALSAVAA 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ F G GE   D E F A+ F + + G  D
Sbjct: 266 TGSPIIFYGTGEHFADFESFNAQSFVSRLMGMGD 299


>gi|260437024|ref|ZP_05790840.1| signal recognition particle protein [Butyrivibrio crossotus DSM
           2876]
 gi|292810333|gb|EFF69538.1| signal recognition particle protein [Butyrivibrio crossotus DSM
           2876]
          Length = 448

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 150/304 (49%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     +    RL  D V+  ++++   L+ +D+   V ++ V  +  +   
Sbjct: 3   FDSLSEKLQNIFKKLRGKGRLSADDVKTAMKEVKMALLEADVNFKVVKQFVNTVSERAVG 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E +  ++   +   ++     P VI++ G+ G GKTT   K+
Sbjct: 63  QDVMSSLTPGQMVIKIVNEEMVALMGSETTEISFVPGAAPTVIMMAGLQGAGKTTTTAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+ + G + +L A D +R AAI QL+I  ++           +    +A  A   AQ 
Sbjct: 123 AGKLKEKGKRPLLVACDVYRPAAIKQLQINGEKQGVPVFEMGDNNKPVDIAKAALAHAQK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +V+I+DTAGRLH +  +M  + ++   +        H  + V+DA TGQ+A+     
Sbjct: 183 NNNNVVILDTAGRLHVDEDMMNELKEIKEAVN------VHQTILVVDAMTGQDAVNVAST 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FNEQIGIDGVVLTKLDGDTRGGAALSIKAVTGKPILYIGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|198275694|ref|ZP_03208225.1| hypothetical protein BACPLE_01869 [Bacteroides plebeius DSM 17135]
 gi|198271323|gb|EDY95593.1| hypothetical protein BACPLE_01869 [Bacteroides plebeius DSM 17135]
          Length = 443

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 141/266 (53%), Gaps = 15/266 (5%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRRALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTTL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
                   +   RP VIL+ G+ G GKTT  GKL++ M S    K +L A D +R AAI+
Sbjct: 86  MGGDTAEIELKGRPAVILMSGLQGSGKTTFSGKLARMMKSKKNRKPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           QLK+   +     V SE+ S D   +A  A ++A+AK  D++I+DTAGRL  +  +M  I
Sbjct: 146 QLKVLGQQIEVP-VYSELDSKDPVQIALNAIQEAKAKGYDLVIVDTAGRLAIDEQMMNEI 204

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             + + +       P + L V+DA TGQ+A+     F+     TG+++TK+DG  RGG  
Sbjct: 205 EAIKKAIN------PDATLFVVDAMTGQDAVNTAREFNERLDFTGVVLTKLDGDTRGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPF 301
           + I      P+ F+G GE ++ ++ F
Sbjct: 259 LSIRTVVNKPIMFVGTGEKLDAVDQF 284


>gi|110763770|ref|XP_624497.2| PREDICTED: signal recognition particle 54 kDa protein-like [Apis
           mellifera]
          Length = 498

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP++I+ VG+ G GKTT   KL+        K  L   DTFR+ A DQ+K  A +    F
Sbjct: 100 RPNIIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A +  +  + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEVDPVTIAQDGVEMFKKEGYEIIIVDTSGRHKQEESLFE---EMLQVANAIQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DAT GQ    Q + F        +I+TK+DG A+GGG +  V   + PV F+
Sbjct: 216 --NIIFVMDATIGQACEAQAKAFKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFV 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+DLEPF  K F + + G  D
Sbjct: 274 GTGEHIDDLEPFKTKPFISKLLGMGD 299


>gi|217969599|ref|YP_002354833.1| signal recognition particle protein [Thauera sp. MZ1T]
 gi|217506926|gb|ACK53937.1| signal recognition particle protein [Thauera sp. MZ1T]
          Length = 456

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 112/209 (53%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT  GKL+K + +    KV++ + D +R AAI+QLK  A +  
Sbjct: 97  TQPPAVVLMAGLQGAGKTTTTGKLAKLLHEQHKKKVLVVSTDVYRPAAIEQLKTVAAQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             F  SE       +A  A   A+   +DVL++DTAGRL  +  +MA I  +   +K   
Sbjct: 157 VGFFPSETAQKPVDIALAALDYARKHHMDVLLVDTAGRLAVDEAMMAEIQVLHAAVK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+     F+     TG+++TK+DG +RGG  + +      P+
Sbjct: 214 ---PIETLFVVDAMLGQDAVNTARAFNEALPLTGIVLTKLDGDSRGGAALSVRHVTGKPL 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GVGE ++ LEPF     ++ I G  D
Sbjct: 271 KFAGVGEKLSGLEPFHPDRMASRILGMGD 299


>gi|156407984|ref|XP_001641637.1| predicted protein [Nematostella vectensis]
 gi|156228776|gb|EDO49574.1| predicted protein [Nematostella vectensis]
          Length = 498

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 138/269 (51%), Gaps = 14/269 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDF 107
           L+ SD+ V + +++ E +      +  A  ++ ++++ + V + + K++ P  K   W  
Sbjct: 39  LLESDVNVQLVKRLRENVKAAIDFEEMAAGLNKRKMIQHTVFQELCKLVDPGVKA--WTP 96

Query: 108 SH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S  + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +  
Sbjct: 97  SKGKKNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKAR 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             F  S   +D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + 
Sbjct: 157 IPFYGSYTETDPVIIAQEGVEKFKEENFEIIIVDTSGRHKQEESLFE---EMLQVSNAV- 212

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             +P +++ V+DAT GQ    Q   F        +I+TK+DG A+GGG +  V   K P+
Sbjct: 213 --SPDNIIFVMDATIGQACESQSRAFKEKVDVASVIVTKLDGHAKGGGALSAVAATKSPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G GE I+D E F  + F + + G  D
Sbjct: 271 IFIGTGEHIDDFEQFKTRPFISKLLGMGD 299


>gi|187476962|ref|YP_784986.1| signal recognition particle protein [Bordetella avium 197N]
 gi|115421548|emb|CAJ48057.1| signal recognition particle protein [Bordetella avium 197N]
          Length = 470

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 141/284 (49%), Gaps = 30/284 (10%)

Query: 53  LIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK----PFN 104
           L+ +D+ + V +  V    E+ L +  A  ++  + L     L+HK L  L      P +
Sbjct: 38  LLEADVALPVVRDFVARVKEKALGEEVASSLTPGQTLVG---LVHKELTSLMGGDLGPGS 94

Query: 105 WDFS---HRPHVILVVGVNGVGKTTVIGKLSKKMSDA----------GLKVMLAAGDTFR 151
            + S     P VIL+ G+ G GKTT  GKL++ +S+             KV++ + D +R
Sbjct: 95  GELSLAVQPPAVILMAGLQGAGKTTTTGKLARWLSEGEHIQNGRKSGKKKVLVVSADVYR 154

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            AAI+QLK  A +   DF+ S+       +A  A + A+    DVLI+DTAGRL  +  +
Sbjct: 155 PAAIEQLKTVAAQVGVDFLPSDPSQKPEDIARNAVEHARRHHYDVLIVDTAGRLGIDEAM 214

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  I  +  ++K      P   L V+DA  GQ+A+     F      TG+++TK+DG AR
Sbjct: 215 MREIAALHALVK------PVETLFVVDAMQGQDAVNTARAFAEALPLTGVVLTKLDGDAR 268

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG  + +      P+ F+GV E ++ L+PF  +  +  + G  D
Sbjct: 269 GGAALSVRHITGKPLKFVGVSEKLDGLQPFHPERMAQRVLGMGD 312


>gi|294139726|ref|YP_003555704.1| signal recognition particle protein Ffh [Shewanella violacea DSS12]
 gi|293326195|dbj|BAJ00926.1| signal recognition particle protein Ffh [Shewanella violacea DSS12]
          Length = 457

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 152/310 (49%), Gaps = 27/310 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V +  V    E  + 
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEDNVKETLREVRMALLEADVALPVVRAFVNNVKERAVG 61

Query: 73  KRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIG 129
           +  +K +S  +    +  SEL + M          D S   P VI+V G+ G GKTT + 
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELENAMG---EANEGLDLSALPPAVIMVAGLQGAGKTTSVA 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL K + +   K V++ + D +R AAI QL+  A      F  S++      +   A   
Sbjct: 119 KLGKFLREREKKSVLVVSADVYRPAAIKQLETLATEVDVQFFPSDVSQKPIDIVNAALAH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245
           A+ K +DV+I+DTAGRLH +  +M  I  +         HA   P   L V+DA TGQ+A
Sbjct: 179 AKLKFIDVVIVDTAGRLHVDESMMDEIKAL---------HAAVNPVETLFVVDAMTGQDA 229

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
               + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LE F    
Sbjct: 230 AITAKAFNEALPLTGIVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEAFHPDR 289

Query: 306 FSAVITGCLD 315
            ++ I G  D
Sbjct: 290 IASRILGMGD 299


>gi|237712935|ref|ZP_04543416.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|260173557|ref|ZP_05759969.1| putative signal recognition protein [Bacteroides sp. D2]
 gi|262409622|ref|ZP_06086162.1| signal recognition particle protein [Bacteroides sp. 2_1_22]
 gi|294643466|ref|ZP_06721279.1| signal recognition particle protein [Bacteroides ovatus SD CC 2a]
 gi|294807908|ref|ZP_06766689.1| signal recognition particle protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|298484340|ref|ZP_07002501.1| signal recognition particle protein [Bacteroides sp. D22]
 gi|315921825|ref|ZP_07918065.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|229447054|gb|EEO52845.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352475|gb|EEZ01575.1| signal recognition particle protein [Bacteroides sp. 2_1_22]
 gi|292641185|gb|EFF59390.1| signal recognition particle protein [Bacteroides ovatus SD CC 2a]
 gi|294444906|gb|EFG13592.1| signal recognition particle protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|295087957|emb|CBK69480.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacteroides
           xylanisolvens XB1A]
 gi|298269494|gb|EFI11094.1| signal recognition particle protein [Bacteroides sp. D22]
 gi|313695700|gb|EFS32535.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 440

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 139/265 (52%), Gaps = 13/265 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
              +    +   RP VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AAI+
Sbjct: 86  MGGETAEINIDARPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++ A++      C     +   +A  A ++A+AK  D++I+DTAGRL  +  +M  I 
Sbjct: 146 QLRVLAEQIEVPMYCELDSKNPVEIAQHAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIA 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +   +       P+ +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 206 AIKEAIN------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I      P+ F+G GE +  ++ F
Sbjct: 260 SIRSVVNKPIKFVGTGEKLEAIDQF 284


>gi|291276573|ref|YP_003516345.1| signal recognition particle protein [Helicobacter mustelae 12198]
 gi|290963767|emb|CBG39602.1| signal recognition particle protein [Helicobacter mustelae 12198]
          Length = 445

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 140/270 (51%), Gaps = 8/270 (2%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +EL+  L+++D+   V ++I++++ +K  A  +  Q  L  + E I  +L   SK + + 
Sbjct: 30  DELKKALLKNDVHHKVTKEIIQQVQSKTKALGIGKQNFLDSLQEAILSILQS-SKNYGFV 88

Query: 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           F+ +P  +IL+ G+ G GKTT   KL+  +     KV+LAA D  R AA+ QL+   ++ 
Sbjct: 89  FASKPPTIILMTGLQGSGKTTTSAKLANYLKTKNKKVLLAACDLQRLAAVKQLQSLGEKI 148

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             +    +       +A  A ++A   + DVLIIDTAGRL  +  LM  +  +   +   
Sbjct: 149 EVEVFHVQDAKSPIEVAKRAKEKAMGHQYDVLIIDTAGRLAIDDTLMQELTDIKAAIN-- 206

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  +  V D+ +GQ+ +R  ++F+     +G+I++K D  ++GG  + I     +P
Sbjct: 207 ----PDEIFYVADSLSGQDGVRTADLFNQKLDVSGVILSKFDSDSKGGIALSIAYQIGLP 262

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G GE I D + F+     + + G  D
Sbjct: 263 LRFIGTGEKIPDFDIFLPDRIVSRLMGAGD 292


>gi|329894268|ref|ZP_08270154.1| Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)
           [gamma proteobacterium IMCC3088]
 gi|328923199|gb|EGG30521.1| Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)
           [gamma proteobacterium IMCC3088]
          Length = 454

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 148/308 (48%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  I    +L +    G   E+   L+ +D+ + V +   E +  +   
Sbjct: 2   FQSLSDRLSATLKSISGKAKLSEDNIQGTLREVRMALLEADVALPVVKTFTEAVKQRALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   +   +   ++  N   +  P +IL+ G+ G GKTT + KL
Sbjct: 62  QEVAQALSPGQAFLKIVQSELESTMGSANESLNL-ATQPPAIILMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++ +   K V + + D +R AAI QL+  A    A F+ S++      +A  A + A+
Sbjct: 121 ARRLIEREKKSVSVVSADVYRPAAIKQLETLAQEVGARFIPSDMNESPVEIAKRAVQTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            +  DVL++DTAGRL  ++ +MA I          D HA   P   L V+DA TGQ+A  
Sbjct: 181 TQFSDVLLVDTAGRLAIDAEMMAEIK---------DLHAAIDPIETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+I+TK+D   RGG  + +      P+ FLGVGE    L+PF     +
Sbjct: 232 TAKAFGDALPLTGVILTKVDADVRGGAALSVRSITGKPIKFLGVGEKTQALDPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|319425569|gb|ADV53643.1| signal recognition particle protein [Shewanella putrefaciens 200]
          Length = 457

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL ++ V+E L ++   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + K +   ++  +   +  P V+++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVLMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +     K V++ + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLAAEVDVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+IIDTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIIDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|50365296|ref|YP_053721.1| signal recognition particle (signal binding protein) [Mesoplasma
           florum L1]
 gi|50363852|gb|AAT75837.1| signal recognition particle (signal binding protein) [Mesoplasma
           florum L1]
          Length = 450

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 148/291 (50%), Gaps = 18/291 (6%)

Query: 34  DIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTK---RYAKD--VSVQRVL 85
           +I  S   D+ ++E L ++   L+ +D+ V V ++++ ++  K    Y ++   S Q++L
Sbjct: 18  NIKKSTLTDENIQETLREIRLALLEADVNVEVVKELISKIKEKTVGEYIQEGVTSHQQML 77

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
             V E +  +L     P N   S +P V+++VG+ G GKTT   KL+  ++    K  L 
Sbjct: 78  KIVHEELIDILGTEKAPLN--LSKKPSVVMMVGLQGSGKTTSSSKLAHYLAKKEAKKPLL 135

Query: 146 AG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            G D +R  AIDQL    ++ +   V  +        A +A + A+    DV+I+DTAGR
Sbjct: 136 VGLDIYRPGAIDQLVELGNKNNIP-VFEQGKQSPLKTAKQALEFAEKNGHDVVILDTAGR 194

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           L  +  LM  +  + ++       +P+  L V+D   GQ  +     F+     TG+I+T
Sbjct: 195 LQIDKDLMNELNDLRKI------TSPNETLLVVDGMIGQEIINVTNEFNNQLKLTGVIVT 248

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           K+DG ARGG  + I    K+P+ F+G GEG++ L PF  K  +  I G  D
Sbjct: 249 KLDGDARGGATLSIRYMTKLPIKFIGEGEGVSALAPFYPKRMADRILGMGD 299


>gi|160886334|ref|ZP_02067337.1| hypothetical protein BACOVA_04343 [Bacteroides ovatus ATCC 8483]
 gi|299146818|ref|ZP_07039886.1| signal recognition particle protein [Bacteroides sp. 3_1_23]
 gi|156108219|gb|EDO09964.1| hypothetical protein BACOVA_04343 [Bacteroides ovatus ATCC 8483]
 gi|298517309|gb|EFI41190.1| signal recognition particle protein [Bacteroides sp. 3_1_23]
          Length = 440

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 139/265 (52%), Gaps = 13/265 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
              +    +   RP VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AAI+
Sbjct: 86  MGGETAEINIDARPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++ A++      C     +   +A  A ++A+AK  D++I+DTAGRL  +  +M  I 
Sbjct: 146 QLRVLAEQIEVPMYCELDSKNPVEIAQHAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIA 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            + + +       P  +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 206 AIKKAIN------PDEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I      P+ F+G GE +  ++ F
Sbjct: 260 SIRSVVNKPIKFVGTGEKLEAIDQF 284


>gi|154277597|ref|XP_001539638.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150413223|gb|EDN08606.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 651

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 138/278 (49%), Gaps = 37/278 (13%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVA--QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKML 96
           RL DGV +EL        IG      Q I   L   R A + S++++L   S L + + +
Sbjct: 378 RLCDGVEQEL--------IGKKTGSFQSIDAAL---RAAMESSLRKILTPTSSLDLLREI 426

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             ++ P N     RP+VI +VGVNGVGK+T + K+   +     +V++AA DTFRS A++
Sbjct: 427 EAVTSPSNSQKQRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVE 486

Query: 157 QLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           QL++ A R   +    E            G DAA +A +A   A     DV++IDTAGR 
Sbjct: 487 QLRVHA-RNLKELSARENVGQVELYEKGYGKDAANVAKDAVAYAAVNNFDVVLIDTAGRR 545

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGL 261
           HN+  LM+ + K  +  +      P  +  V +A  G +++ Q   F+   GT     G 
Sbjct: 546 HNDQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRKLDGF 599

Query: 262 IMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
           IM+K D      G L+ +V    IP+ FLG+G+   DL
Sbjct: 600 IMSKCDTVGDMVGALVSMVHATGIPIVFLGIGQHYGDL 637


>gi|255325261|ref|ZP_05366367.1| signal recognition particle protein [Corynebacterium
           tuberculostearicum SK141]
 gi|255297826|gb|EET77137.1| signal recognition particle protein [Corynebacterium
           tuberculostearicum SK141]
          Length = 549

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 26/282 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  ++ +  +    +VS      Q+V+  V+E + ++L   ++  N   
Sbjct: 38  LLEADVSLTVVRGFIKRIKERARGAEVSEALNPAQQVVKIVNEELIEILGGETRRLNL-A 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
            + P VI++ G+ G GKTT+ GKL+K ++  G   ML A D  R  A+ QL+I  +R   
Sbjct: 97  KNPPTVIMLAGLQGAGKTTLAGKLAKHLAKQGHTPMLVACDLQRPGAVQQLQIVGERAEV 156

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   TS D    E+G+   D   +A     +A+ K+ DV+IIDTAGRL  +  LM 
Sbjct: 157 PTFAPDPGTSLDSNEHEMGTSHGDPVDVAKRGIAEAKQKQHDVVIIDTAGRLGIDETLMT 216

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              + IR     D   P  VL V+D+  GQ+A++  E F      TG+++TK+DG ARGG
Sbjct: 217 Q-ARNIR-----DAVNPDEVLFVIDSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGG 270

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ +   GE ++D + F  +  S+ I G  D
Sbjct: 271 AALSIREVTGKPIMYASTGEKLDDFDVFHPERMSSRILGMGD 312


>gi|189425506|ref|YP_001952683.1| signal recognition particle protein [Geobacter lovleyi SZ]
 gi|189421765|gb|ACD96163.1| signal recognition particle protein [Geobacter lovleyi SZ]
          Length = 463

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 143/287 (49%), Gaps = 24/287 (8%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSE 90
           +D +++ L ++   L+ +D+   V +  VE +  K    +V         V R+++D  E
Sbjct: 24  EDNIKDALREVRLALLEADVNFKVVKDFVENVRLKAVGTEVMQSLAPGQQVVRIVHD--E 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           LI   LM   +  N D + +P V+L +VG+ G GKTT  GKL   +     + +L   D 
Sbjct: 82  LIT--LMGGDQDNNLDLAAKPPVVLMLVGLQGAGKTTTCGKLGSWLRKQKRRPLLVPADV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK    + + D   S+ G +   +   A + A+    D +++DTAGR   + 
Sbjct: 140 YRPAAIEQLKTVGRQLNIDVFDSQTGQEPVDICSAAVRFAELNGFDTVLLDTAGRHQIDD 199

Query: 210 ILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
            LM         L+R+   A P  +L V DA TGQ A+     F+   G TG+I++K+DG
Sbjct: 200 FLM-------NELERIKAAAQPREILFVADAMTGQEAVTVAGGFNDRLGITGVILSKLDG 252

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            A+GG  + I      PV F+G+GE ++ LE F      + I G  D
Sbjct: 253 DAKGGAALSIKAVTGAPVKFVGLGEKLDALEVFHPDRLVSRILGMGD 299


>gi|302504693|ref|XP_003014305.1| hypothetical protein ARB_07612 [Arthroderma benhamiae CBS 112371]
 gi|291177873|gb|EFE33665.1| hypothetical protein ARB_07612 [Arthroderma benhamiae CBS 112371]
          Length = 650

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLY-DVSELIHKMLMP----- 98
           +ED L++ ++    A ++ E    EL+ K+ A   S+   L   +   + K+L P     
Sbjct: 361 MEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQSIDSALRAGMESSLRKILTPTTSLD 420

Query: 99  -------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                  ++ P N     RP+VI VVGVNGVGK+T + KL   +     KV++AA DTFR
Sbjct: 421 LLREIEVVTSPTNQQHPRRPYVISVVGVNGVGKSTNLSKLCFFLLQNKYKVLIAACDTFR 480

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A   A +   DV++ID
Sbjct: 481 SGAVEQLRVHA-RNLKELSARENAGHVELYEKGYGKDAANVAKDAVAYAASNDFDVVLID 539

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +         P  +L V +A  G +++ Q   F+   G   
Sbjct: 540 TAGRRHNDQRLMSSLEKFAKFAN------PDKILMVGEALVGTDSVMQARNFNQAFGPGR 593

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 594 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 636


>gi|266624043|ref|ZP_06116978.1| signal recognition particle protein [Clostridium hathewayi DSM
           13479]
 gi|288864130|gb|EFC96428.1| signal recognition particle protein [Clostridium hathewayi DSM
           13479]
          Length = 327

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 157/304 (51%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++    RL +  V+  L+++   L+ +D+   V ++ +  +  +   
Sbjct: 3   FESLSDKLQNVFKNLRGKGRLTEADVKAALKEVKMALLEADVSFRVVKQFISAVQERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E +  ++   +   +   ++   +I++ G+ G GKTT   K+
Sbjct: 63  QDVMNSLTPGQMVIKIVNEELVNLMGSETTEIHLKPANEITIIMMAGLQGAGKTTTTAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G K +LAA D +R AAI QL+I  ++              A +A  A + A  
Sbjct: 123 AGKLKAKGRKPLLAACDVYRPAAIKQLQINGEKQGVPVFSMGENHKPADIAKAAVEHASK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +V+I+DTAGRLH +  +M    +++ + + ++ H   ++L V+DA TGQ+A+    M
Sbjct: 183 NDQNVVILDTAGRLHIDEDMM---NELVEIKEAVEVH--QTIL-VVDAMTGQDAVNVAGM 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FNDKIGIDGVILTKLDGDTRGGAALSIRSVTGKPILYIGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|167648842|ref|YP_001686505.1| signal recognition particle protein [Caulobacter sp. K31]
 gi|167351272|gb|ABZ74007.1| signal recognition particle protein [Caulobacter sp. K31]
          Length = 511

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 153/289 (52%), Gaps = 17/289 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY---DVSEL 91
           ++S + +D+ +RE +   L+ +D+ + V +  + +   K  A   +V R +     V ++
Sbjct: 21  VLSEKDIDEALRE-VRVALLEADVALPVVKDFISK--AKEAASGEAVIRSVKPADQVVKI 77

Query: 92  IHKMLMPL---SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146
           ++  L+ +     P   + + + P VIL+ G+ G GKTT  GKL+ +++    K V++A+
Sbjct: 78  VYDGLVDMLGGEVPTGLNLALNPPSVILMAGLQGSGKTTTTGKLALRLNKVERKKVLVAS 137

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DT R AA++QL + A +   + +    G  AA +A  A   A+    DVLI+DTAGR  
Sbjct: 138 LDTRRPAAMEQLAMLAKQVEVECLPIVPGQSAADIARRALTAAKLGGYDVLILDTAGRTT 197

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  +M+   ++ R+ +      P   L V D+ TGQ+A+R  + FH     TGLI+T+ 
Sbjct: 198 LDEAMMSEAAEIARIAQ------PSETLLVADSLTGQDAVRTAKAFHERLPLTGLILTRA 251

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + +     +P+ FLG GE I+ L+ F A+  +  I G  D
Sbjct: 252 DGDGRGGAALSMRHVTGLPIKFLGAGEKIDALDVFDARRVAGRILGQGD 300


>gi|154174570|ref|YP_001408556.1| signal recognition particle protein [Campylobacter curvus 525.92]
 gi|112803067|gb|EAU00411.1| signal recognition particle protein [Campylobacter curvus 525.92]
          Length = 446

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 9/217 (4%)

Query: 99  LSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L+ P N  F   S  P ++L+ G+ G GKTT   KL+  +     KV++AA D  R AA+
Sbjct: 79  LTAPGNQGFVYSSSAPTIVLMAGLQGSGKTTTTIKLANYLKLRKKKVLVAACDLQRLAAV 138

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+   +    D    E  +D   +A  A ++A++   DVL++DTAGRL  +  LM  I
Sbjct: 139 EQLRQLCEANEIDLFFIEGENDPIKVARAALQKAKSGLYDVLLVDTAGRLAIDETLMNEI 198

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +   +K      PH +  V DA +GQ+ ++    F+     TG+I++K D  ++GG  
Sbjct: 199 KLVKEAIK------PHEIFYVADAMSGQDGVKSAASFNEALNITGVILSKFDSDSKGGVA 252

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           I I    +IP+ F+G+GE  +DLE F+ +   + I G
Sbjct: 253 ISIAKQLEIPLRFVGIGEKASDLESFIPERIVSRIMG 289


>gi|150398289|ref|YP_001328756.1| signal recognition particle protein [Sinorhizobium medicae WSM419]
 gi|150029804|gb|ABR61921.1| signal recognition particle protein [Sinorhizobium medicae WSM419]
          Length = 514

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GK++K+++    K V++A+ DT R AA +QL+    +T  D 
Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTARDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    D++I+DTAGR H +  LM  + ++ R        +
Sbjct: 160 LPIIAGQSPTDIAARAVQAAKLGGHDIVILDTAGRTHIDEPLMMEMAEIKR------KSS 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V DA TGQ+A+     F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADALTGQDAVNLARSFDERVGITGLVLTRMDGDGRGGAALSMRAITGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE +++LE F  +  +  I G  D
Sbjct: 274 GVGEKMDELEEFHPRRVADRILGMGD 299


>gi|298253307|ref|ZP_06977099.1| signal recognition particle GTPase [Gardnerella vaginalis 5-1]
 gi|297532702|gb|EFH71588.1| signal recognition particle GTPase [Gardnerella vaginalis 5-1]
          Length = 556

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 152/323 (47%), Gaps = 35/323 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FSSLTDRLSNAFKHLRSKGKLSESDIDGTIREIRRALLDADVALEVVRSFTARIRERALG 63

Query: 77  KDVS-----VQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           ++VS      Q+V+  V+ EL   +   + +  N+   + P VI++ G+ G GKTT+ GK
Sbjct: 64  EEVSHALNPAQQVVKIVNDELTQVLGAGVDRQLNF-AKYPPTVIMLAGLQGAGKTTLAGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + DAG   +L A D  R  A+ QL++  +R        E G               
Sbjct: 123 LGYWLKDAGHTPLLVAADLQRPNAVTQLQVVGERAGVPVFAPEKGVQTGGSAISLPWFTK 182

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D   +A ++   A+ K  D +IIDTAGRL  +  LM    K  R ++  D   P  VL 
Sbjct: 183 GDPVKVARDSINYAREKMYDTVIIDTAGRLGVDEELM----KQARNIR--DAVQPQEVLF 236

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DA  GQ+A+R  + F+     TG++++K+DG ARGG  + +      P+ F   GEG+
Sbjct: 237 VIDAMIGQDAVRTAQAFNDGVNFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEGL 296

Query: 296 NDLEPFVAKDFSAVITGCLDYGE 318
            D E F     ++ I   LD G+
Sbjct: 297 KDFEIFHPDRMASRI---LDMGD 316


>gi|283782828|ref|YP_003373582.1| signal recognition particle protein [Gardnerella vaginalis 409-05]
 gi|297242896|ref|ZP_06926834.1| signal recognition particle GTPase [Gardnerella vaginalis AMD]
 gi|283441946|gb|ADB14412.1| signal recognition particle protein [Gardnerella vaginalis 409-05]
 gi|296889107|gb|EFH27841.1| signal recognition particle GTPase [Gardnerella vaginalis AMD]
          Length = 556

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 152/323 (47%), Gaps = 35/323 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FSSLTDRLSNAFKHLRSKGKLSESDIDGTIREIRRALLDADVALEVVRSFTARIRERALG 63

Query: 77  KDVS-----VQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           ++VS      Q+V+  V+ EL   +   + +  N+   + P VI++ G+ G GKTT+ GK
Sbjct: 64  EEVSHALNPAQQVVKIVNDELTQVLGAGVDRQLNF-AKYPPTVIMLAGLQGAGKTTLAGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + DAG   +L A D  R  A+ QL++  +R        E G               
Sbjct: 123 LGYWLKDAGHTPLLVAADLQRPNAVTQLQVVGERAGVPVFAPEKGVQTGGSAISLPWFTK 182

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D   +A ++   A+ K  D +IIDTAGRL  +  LM    K  R ++  D   P  VL 
Sbjct: 183 GDPVKVARDSINYAREKMYDTVIIDTAGRLGVDEELM----KQARNIR--DAVQPQEVLF 236

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DA  GQ+A+R  + F+     TG++++K+DG ARGG  + +      P+ F   GEG+
Sbjct: 237 VIDAMIGQDAVRTAQAFNDGVNFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEGL 296

Query: 296 NDLEPFVAKDFSAVITGCLDYGE 318
            D E F     ++ I   LD G+
Sbjct: 297 KDFEIFHPDRMASRI---LDMGD 316


>gi|319951000|ref|ZP_08024870.1| signal recognition particle protein [Dietzia cinnamea P4]
 gi|319435343|gb|EFV90593.1| signal recognition particle protein [Dietzia cinnamea P4]
          Length = 529

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 150/317 (47%), Gaps = 30/317 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL D        E+   L+ +D+ + V +  +  +  K  A
Sbjct: 2   FESLSDRLTGALKDLRGKGRLSDADIDATAREIRLALLEADVALPVVRAFISRV--KERA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130
           K   V   L    +++  +   L+     +    +F+ +P  VI++ G+ G GKTT+ GK
Sbjct: 60  KGAEVSEALNPAQQVVKIVDAELTAILGGEARRIEFAKQPPTVIMLAGLQGAGKTTLAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----TSADFVCSEIGSDAA------- 179
           L+  +   G   +L A D  R  A+DQL+I  +R    T A    + +G D A       
Sbjct: 120 LAYWLKGQGHTPLLVACDLQRPGAVDQLRIVGERAGVQTFAPHPGTSVGGDGAEIGVQEP 179

Query: 180 -ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            ++A      A+AK  DV+I+DTAGRL  +  +MA   + IR     D   PH    VLD
Sbjct: 180 VSVAQRGLAHARAKMHDVVIVDTAGRLGIDEEMMA-QARGIR-----DAVQPHETFFVLD 233

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+   E F    G TG+++TK+DG ARGG  + +      P+ F   GE + D 
Sbjct: 234 AMIGQDAVVTAEAFREGVGFTGVVLTKLDGDARGGAALSVRELTGTPIMFASDGEKLEDF 293

Query: 299 EPFVAKDFSAVITGCLD 315
           + F  +  S+ I G  D
Sbjct: 294 DVFHPERMSSRILGMGD 310


>gi|329962381|ref|ZP_08300385.1| signal recognition particle protein [Bacteroides fluxus YIT 12057]
 gi|328530104|gb|EGF56989.1| signal recognition particle protein [Bacteroides fluxus YIT 12057]
          Length = 440

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 140/265 (52%), Gaps = 13/265 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + + TK   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKNFTDTVKTKALGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
              +    +   +P VIL+ G+ G GKTT  GKL++ + S    K +L A D +R AAI+
Sbjct: 86  MGGETAEINIDSKPAVILMSGLQGSGKTTFSGKLARMLKSKKNRKPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++ A++            D   +A  A  +A+AK  D++I+DTAGRL  +  +M  I 
Sbjct: 146 QLRVLAEQIEVPMYSEPDSKDPVRIAQNAILEAKAKGYDLVIVDTAGRLAVDEEMMNEIA 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            + + +       P+ +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 206 AIKKAIN------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I      P+ F+G GE ++ ++ F
Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQF 284


>gi|171463017|ref|YP_001797130.1| signal recognition particle protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192555|gb|ACB43516.1| signal recognition particle protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 460

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 143/276 (51%), Gaps = 14/276 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDV--SELIHKMLMPLSK 101
           E+   L+ +D+ + V + ++E++  K   ++V    S  + L  V   EL   M    ++
Sbjct: 33  EIRLALLEADVALPVVKSLLEQIKFKALGEEVVGSLSPGQALVGVVQRELAQVMQSDTNQ 92

Query: 102 PFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLK 159
               + + +P  VIL+ G+ G GKTT +GKL+K + +   K V+  + D +R AAI+QL+
Sbjct: 93  SGELNLATQPPAVILMAGLQGAGKTTSVGKLAKWLQEKKKKKVLTVSCDVYRPAAIEQLE 152

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
               +  A+F  S+I      +A  A   A+    DV+++DTAGRL  +  LM  I  + 
Sbjct: 153 TVTKQVGAEFFPSDISQKPNDIALAALDWARHHYFDVVLVDTAGRLGIDEALMQEIKTLH 212

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
             L       P   L V+DA  GQ+A+   + FH     TG+I+TK+DG +RGG  + + 
Sbjct: 213 SSLN------PIETLFVVDAMLGQDAVNTAKAFHEALPLTGVILTKLDGDSRGGAALSVR 266

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +P+ F+GV E ++ LE F A+  +  I G  D
Sbjct: 267 QITGVPLKFIGVAEKMDGLEAFDAERMANRILGMGD 302


>gi|224539094|ref|ZP_03679633.1| hypothetical protein BACCELL_03995 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519284|gb|EEF88389.1| hypothetical protein BACCELL_03995 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 439

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 144/279 (51%), Gaps = 13/279 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKTFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
              +    D   +P VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AAI+
Sbjct: 86  MGGETAEIDLEGKPAVILMSGLQGSGKTTFSGKLARMLKTKKNKKPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++ A++            +   +A  A ++A+AK  DV+I+DTAGRL  +  +M  I 
Sbjct: 146 QLRVLAEQIGVPIYSEPDSKNPVKIAENAIQEAKAKGYDVVIVDTAGRLAVDEEMMNEIA 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            + + +       P+ +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 206 AIKKAIN------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I      P+ F+G GE ++ ++ F     S  I G  D
Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQFHPSRMSDRILGMGD 298


>gi|315053627|ref|XP_003176188.1| signal recognition particle receptor subunit alpha [Arthroderma
           gypseum CBS 118893]
 gi|311338034|gb|EFQ97236.1| signal recognition particle receptor subunit alpha [Arthroderma
           gypseum CBS 118893]
          Length = 650

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 137/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSK-- 101
           +ED L++ ++    A ++ E    EL+ K+ A   S+   L   +   + K+L P S   
Sbjct: 361 MEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQSIDSALRAGMESSLRKILTPTSSLD 420

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P N     RP+VI VVGVNGVGK+T + KL   +     KV++AA DTFR
Sbjct: 421 LLREIEVVTSPTNRQQPRRPYVISVVGVNGVGKSTNLSKLCFFLLQNKYKVLIAACDTFR 480

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A   A     DV++ID
Sbjct: 481 SGAVEQLRVHA-RNLKELSARENAGHVELYEKGYGKDAANVAKDAVSYAATNDFDVVLID 539

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +         P  +L V +A  G +++ Q   F+   G+  
Sbjct: 540 TAGRRHNDQRLMSSLEKFAKFAN------PDKILMVGEALVGTDSVMQARNFNQAFGSGR 593

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 594 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 636


>gi|307353993|ref|YP_003895044.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Methanoplanus petrolearius DSM 11571]
 gi|307157226|gb|ADN36606.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanoplanus petrolearius DSM 11571]
          Length = 441

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 135/277 (48%), Gaps = 24/277 (8%)

Query: 47  EELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           ++L+ +L+++D+ V        A+ Q+ +EE   K  +    V R++Y   EL++ M   
Sbjct: 32  KDLQRVLLQADVNVKLVMNLSKAIKQRSLEEEPPKGMSVREHVLRIVY--QELVNLMGEE 89

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +      + +  P  IL+ G+ G GKTT  GKLS+     GL+V +   D FR  A DQL
Sbjct: 90  I------EVTLGPQTILMAGLQGSGKTTTTGKLSRYFQKKGLRVGVICADVFRPGAYDQL 143

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K   D+ +          +A  +     KQ   K  +VLIIDT GR      L+  I K+
Sbjct: 144 KTLCDKVNVPCYGEPGEINAVKIVENGMKQL--KNAEVLIIDTQGRHALEDELIDEIIKI 201

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
             + K     A H  L VLDA  GQ A  Q   FH      G+I+TKMDGTA+GGG +  
Sbjct: 202 NDLSK-----ASHRWL-VLDAALGQQAREQAARFHDAINIDGVIITKMDGTAKGGGALSA 255

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           V      + F+G GE I+DLE F    F + + G  D
Sbjct: 256 VAETGSGIVFVGSGETIDDLERFDPDSFISRLLGMGD 292


>gi|51598948|ref|YP_073136.1| signal recognition particle protein [Borrelia garinii PBi]
 gi|51573519|gb|AAU07544.1| signal recognition particle protein [Borrelia garinii PBi]
          Length = 444

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 6/207 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           ++   IL++G+ G GKTT   KLS K+     KV+L A DTFR+AAI+QLKI   +    
Sbjct: 99  NKQSYILMLGLQGSGKTTTCAKLSLKLKKENRKVLLVAADTFRAAAIEQLKILGSQIGVP 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                   D   +   + K A+++  D +I+DT GRL   S+L+  I K+  +LK     
Sbjct: 159 VFSLTGEKDPIKIVKASIKFAESEFFDSVIVDTRGRLEVESLLVEEIKKIKDILK----- 213

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   + V+D+  GQ A+   + F+   G TG I +K D   RGG ++       +P+ F
Sbjct: 214 -PTETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKF 272

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE + DL+ F  +  ++ I G  D
Sbjct: 273 IGVGERVEDLDSFYPERIASRILGMGD 299


>gi|312278265|gb|ADQ62922.1| SRP54, signal recognition particle GTPase protein, putative
           [Streptococcus thermophilus ND03]
          Length = 520

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + M+ A D +R AAIDQLK    + +   
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEQEARPMMIAADIYRPAAIDQLKTLGQQINVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 + A  +     +QA+A K D ++IDTAGRL  +  LM    K +R +K  D   
Sbjct: 161 FDMGTETPAVEIVRNGLEQARANKNDYVLIDTAGRLQIDETLM----KELRDIK--DFAH 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ +L V+D+  GQ A    + F+     TG+++TK+DG  RGG  + I      P+ F 
Sbjct: 215 PNEILLVVDSMIGQEAANVAKEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I D+E F     S+ I G  D
Sbjct: 275 GTGEKITDIETFHPDRMSSRILGMGD 300


>gi|228992573|ref|ZP_04152500.1| Signal recognition particle protein [Bacillus pseudomycoides DSM
           12442]
 gi|228998621|ref|ZP_04158208.1| Signal recognition particle protein [Bacillus mycoides Rock3-17]
 gi|229006121|ref|ZP_04163809.1| Signal recognition particle protein [Bacillus mycoides Rock1-4]
 gi|228755197|gb|EEM04554.1| Signal recognition particle protein [Bacillus mycoides Rock1-4]
 gi|228761089|gb|EEM10048.1| Signal recognition particle protein [Bacillus mycoides Rock3-17]
 gi|228767207|gb|EEM15843.1| Signal recognition particle protein [Bacillus pseudomycoides DSM
           12442]
          Length = 449

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAGRLH +  LM  + K+  V K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ +E F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300


>gi|118466702|ref|YP_882942.1| signal recognition particle protein [Mycobacterium avium 104]
 gi|118167989|gb|ABK68886.1| signal recognition particle protein [Mycobacterium avium 104]
          Length = 517

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 150/311 (48%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTSALAGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P VI++ G+ G GKT++ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELIGILGGETRQLAFAKTP-PTVIMLAGLQGSGKTSLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184
           +  +   G   +L A D  R AA++QL++  +R          G+       D  A+A +
Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAQ 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA     IR     D   P  +L VLDA  GQ+
Sbjct: 181 GLAEARAKHHDVVIVDTAGRLGIDDELMA-QAAAIR-----DAIDPDEILFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   E F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             S+ I G  D
Sbjct: 295 RMSSRILGMGD 305


>gi|1711512|sp|P49972|SR542_SOLLC RecName: Full=Signal recognition particle 54 kDa protein 2;
           Short=SRP54
 gi|556902|emb|CAA84288.1| 54-kD signal recognition particle (SRP) specific protein [Solanum
           lycopersicum]
          Length = 499

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 6/207 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P +++ VG+ G GKTT   K +      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KPSIVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S   SD   +A +  +  + +  D++I+DT+GR    + L   + ++    K      
Sbjct: 160 YGSYTESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVAEATK------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  V+ V+D++ GQ A  Q + F        +I+TKMDG A+GGG +  V   K PV F+
Sbjct: 214 PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLDY 316
           G GE +++ E F  K F + + G  D+
Sbjct: 274 GTGEHMDEFEVFDVKPFVSRLLGMGDW 300


>gi|227544363|ref|ZP_03974412.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus reuteri
           CF48-3A]
 gi|300909776|ref|ZP_07127237.1| signal recognition particle protein [Lactobacillus reuteri SD2112]
 gi|227185626|gb|EEI65697.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus reuteri
           CF48-3A]
 gi|300893641|gb|EFK87000.1| signal recognition particle protein [Lactobacillus reuteri SD2112]
          Length = 481

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 149/304 (49%), Gaps = 25/304 (8%)

Query: 30  EGITDIISS-----RR----LDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77
           EG+TD +       RR     +  +RE + ++   L+ +D+   V +  V+ +  K    
Sbjct: 4   EGLTDRLQKAMEKLRRKPKVTEADLRETMREIRLALLEADVNFKVVKDFVKTVREKAAGA 63

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q+++  V++ + K++   + P N    H P VI++VG+ G GKTT  GKL+
Sbjct: 64  EVLKGLNPAQQIVKIVNDELTKLMGEEAVPLNK-APHIPTVIMMVGLQGAGKTTTAGKLA 122

Query: 133 KKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            ++ +    + M  A D +R AAI QL+  AD+            D   +  E  + A+ 
Sbjct: 123 LRLKNENHARPMFIAADVYRPAAITQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVAKK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +IIDTAGRL  +  LM  +  +  ++       P+ +L V+D+ TGQNA+   + 
Sbjct: 183 NHNDYVIIDTAGRLQIDEQLMDELANIKELVN------PNEILLVIDSMTGQNAVNTAQG 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ I 
Sbjct: 237 FDDKLDITGVVLTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|229025286|ref|ZP_04181706.1| Signal recognition particle protein [Bacillus cereus AH1272]
 gi|228736039|gb|EEL86614.1| Signal recognition particle protein [Bacillus cereus AH1272]
          Length = 449

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKYNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAGRLH +  LM  + K+  V K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ +E F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300


>gi|33591340|ref|NP_878984.1| signal recognition particle protein [Bordetella pertussis Tohama I]
 gi|33570982|emb|CAE40458.1| signal recognition particle protein [Bordetella pertussis Tohama I]
 gi|332380741|gb|AEE65588.1| signal recognition particle protein [Bordetella pertussis CS]
          Length = 469

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 114/218 (52%), Gaps = 16/218 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA----------GLKVMLAAGDTFRSAAIDQ 157
           +  P VIL+ G+ G GKTT  GKL++ +S+             KV++ + D +R AAI+Q
Sbjct: 101 TQPPAVILMAGLQGAGKTTTTGKLARWLSEGQHVQGGRKTGKKKVLVVSADVYRPAAIEQ 160

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LK  A +   DF+ S++      +A  A   A+    DVLI+DTAGRL  +  +M    +
Sbjct: 161 LKTVAAQVGVDFLPSDVSQKPEDIARNAIDHARRHHYDVLIVDTAGRLGIDEAMM----R 216

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            IR L   D   P   L V+DA  GQ+A+     F      TG+++TK+DG ARGG  + 
Sbjct: 217 EIRALH--DLVKPIETLFVVDAMQGQDAVNTARAFGDALPLTGVVLTKLDGDARGGAALS 274

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +      P+ F+GV E ++ LEPF  +  +  + G  D
Sbjct: 275 VRHVTGKPLKFVGVSEKLDGLEPFHPERMAQRVLGMGD 312


>gi|159185333|ref|NP_355632.2| signal recognition particle protein [Agrobacterium tumefaciens str.
           C58]
 gi|159140588|gb|AAK88417.2| signal recognition particle protein [Agrobacterium tumefaciens str.
           C58]
          Length = 523

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 116/206 (56%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GK++K+++D   K V++A+ DT R AA +QL+    +T  D 
Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM    +M  + K+ +PH 
Sbjct: 160 LPIIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLML---EMADIKKKSNPH- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              +L V D+ TGQ+A+     F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 216 --EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+GE +N+L+ F  +  +  I G  D
Sbjct: 274 GIGERMNELDEFHPRRIADRILGMGD 299


>gi|15615047|ref|NP_243350.1| signal recognition particle [Bacillus halodurans C-125]
 gi|10175104|dbj|BAB06203.1| signal recognition particle [Bacillus halodurans C-125]
          Length = 451

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S  P V+++VG+ G GKTT   KL+  +        +L A D +R AAI QL+    + +
Sbjct: 98  SKPPTVVMMVGLQGAGKTTTTAKLANHLRKKHNRNPILVAADIYRPAAIKQLETLGKQLN 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +A +A ++A+ +  D ++IDTAGRLH +  LM  + ++  V K   
Sbjct: 158 MPVFSLGDQVSPVEIAKQAIERAKEEHHDYVLIDTAGRLHIDEELMDELQQVKEVAK--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  +L V+DA TGQ+A+   E FH     +G+++TK+DG  RGG  + +      P+
Sbjct: 215 ---PDEILLVVDAMTGQDAVNVAESFHEQLDVSGVVLTKLDGDTRGGAALSVKAVTNTPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G+GE I+ LEPF  +  ++ I G  D
Sbjct: 272 KFAGMGEKIDQLEPFHPERMASRILGMGD 300


>gi|317405653|gb|EFV85951.1| ffh protein [Achromobacter xylosoxidans C54]
          Length = 468

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 112/215 (52%), Gaps = 16/215 (7%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG----------LKVMLAAGDTFRSAAIDQLKI 160
           P VIL+ G+ G GKTT  GKL++ +S+             KV++ + D +R AAIDQLK 
Sbjct: 104 PAVILMAGLQGAGKTTTTGKLARWLSEGQHTQHGRKTGKKKVLVVSADVYRPAAIDQLKS 163

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A +   DF+ S+       +A  A   A+    DVLI+DTAGRL  +  +M    + IR
Sbjct: 164 VAAQVGVDFLPSDPSQKPEDIARNAVDHARRHHYDVLILDTAGRLGIDEAMM----REIR 219

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
            L   D   P   L V+DA  GQ+A+     F      TG+++TK+DG ARGG  + +  
Sbjct: 220 ALH--DLVKPVETLFVVDAMQGQDAVNTARAFAEALPLTGVVLTKLDGDARGGAALSVRH 277

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+ F+GV E ++ LEPF  +  +  + G  D
Sbjct: 278 VTGKPLKFVGVSEKLDGLEPFYPERMAQRVLGMGD 312


>gi|85374323|ref|YP_458385.1| signal recognition particle GTPase [Erythrobacter litoralis
           HTCC2594]
 gi|84787406|gb|ABC63588.1| signal recognition particle GTPase [Erythrobacter litoralis
           HTCC2594]
          Length = 500

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 142/267 (53%), Gaps = 32/267 (11%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKML---------MP 98
           L+ +D+ + VA+  ++++  K   +DV  SV   Q+V+  V++ +  ML         +P
Sbjct: 38  LLEADVALPVAKSFIDKVTEKAVGEDVLKSVTPGQQVIKIVNDELVAMLGGDDGEQGHVP 97

Query: 99  LS---KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAA 154
           L+   KP        P VI++VG+ G GKTT   KLSK + +  G K M+A+ D  R AA
Sbjct: 98  LTLEAKP--------PVVIMMVGLQGSGKTTTTAKLSKYIREKHGKKPMMASLDVNRPAA 149

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +QL +  ++     +    G     +A  A + A+ + VDVL++DTAGRLH +  LMA 
Sbjct: 150 QEQLAVLGEQVDVATLPIVQGQQPVDIARRALEAARLQNVDVLLLDTAGRLHVDEALMAE 209

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           +  +  V       AP  VL V+D+ TGQ+A+   + F      TG+++T+MDG ARGG 
Sbjct: 210 MKAVAGV------SAPTEVLLVVDSLTGQDAVNVAQNFSDEVPLTGVVLTRMDGDARGGA 263

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + +      P+ F G GE ++ +E F
Sbjct: 264 ALSMRAVTGKPIKFAGTGEKLDAIEAF 290


>gi|322492125|emb|CBZ27399.1| putative signal recognition particle [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 519

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 15/284 (5%)

Query: 42  DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLTKRYAKDVSVQRVLYD-VSELIH 93
           +D V+E   E+   L+++D+ V + +K    I  EL        ++ +++L + V   + 
Sbjct: 25  EDDVKELMNEIARALLQADVNVTIVKKLQVSIKTELALAEEGAGLNKRKILQNAVFNGLK 84

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           ++L P  KPF      + +V++ VG+ G GKTT   K +      G K  L   DTFR+ 
Sbjct: 85  RILDPGVKPF-IPVKGKQNVVMFVGLQGSGKTTSCTKYAAYFQRKGFKAALVCADTFRAG 143

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQL+  A +    F  S   +D  A+A E   + + +K D++I+DT+GR    S L  
Sbjct: 144 AYDQLRQNATKAKVRFYGSLTEADPVAIAKEGVAELKKEKYDLIIVDTSGRHKQESALFE 203

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++   +K      P+ ++ V+ AT GQ    Q   F  +     +I+TK+D   +GG
Sbjct: 204 EMKQVEEAVK------PNDIVFVMSATDGQAVEEQARNFKEMVAVGSVIVTKLDCQTKGG 257

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           G +  V   + P+ F+G GE   D + F  + F   + G  D G
Sbjct: 258 GALSAVAATRSPIVFIGTGEHFEDFDLFNPERFVQKMLGMGDIG 301


>gi|225571995|ref|ZP_03780859.1| hypothetical protein RUMHYD_00289 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040528|gb|EEG50774.1| hypothetical protein RUMHYD_00289 [Blautia hydrogenotrophica DSM
           10507]
          Length = 449

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++ S  RL +  V+  L ++   L+ +D+   V ++ ++ +  +   
Sbjct: 3   FESLTEKLQNVFKNLRSKGRLTEADVKTALREVKMALLEADVNFKVVKQFIKSVQERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E +  ++   +            + ++ G+ G GKTT   KL
Sbjct: 63  QDVMNGLNPGQMVIKIVNEEMVNLMGSETTEIPSKQGKEITIWMMAGLQGAGKTTTAAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + KM   G K +L A D +R AAI QL++  ++   +       +    +A  A + A+ 
Sbjct: 123 AGKMKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKNHPVDIAKAAVEHAKN 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVE 250
            + +++IIDTAGRLH +         M+R L+ +       + + V+DA TGQ+A+    
Sbjct: 183 NQQNLVIIDTAGRLHIDE-------DMMRELEEIKAQVDVDATILVVDAMTGQDAVNVAS 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I+TKMDG  RGG  + I      P+YF+G+GE ++DLE F     ++ I
Sbjct: 236 AFAEKVGIDGVILTKMDGDTRGGAALSIKAVSGKPIYFVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|254513963|ref|ZP_05126024.1| signal recognition particle protein [gamma proteobacterium NOR5-3]
 gi|219676206|gb|EED32571.1| signal recognition particle protein [gamma proteobacterium NOR5-3]
          Length = 457

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + +  +    RL +    G   E+   L+ +D+ + V  + V+ +  +   
Sbjct: 2   FQNLSERLTQSLRAVTGKARLSEENIQGTLREVRMALLEADVALPVVVQFVKSVKQRALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  L  V   +  ++   ++  N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  QEVMSSLSPGQAFLKIVQAELESVMGSANEGLNL-ATQPPAVILLAGLQGAGKTTSAAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K V + + D +R AAI QL+  A     DF  S +      +A  A + A+
Sbjct: 121 AKLLKERDKKKVTVVSADVYRPAAIKQLETLAAEIGVDFFPSTVDQKPVDIALAAREHAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRL  +  +MA I ++ + +       P   L V+DA TGQ+A    +
Sbjct: 181 IQFSDVLIVDTAGRLAVDEAMMAEIAELEKAV------TPVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+D  +RGG  + +      P+ FLGVGE    L+PF     ++ I
Sbjct: 235 AFGEALPLTGVILTKVDADSRGGAALSVRQVTGKPIKFLGVGEKTEALDPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|55820929|ref|YP_139371.1| signal recognition particle [Streptococcus thermophilus LMG 18311]
 gi|55822851|ref|YP_141292.1| signal recognition particle [Streptococcus thermophilus CNRZ1066]
 gi|116627717|ref|YP_820336.1| signal recognition particle [Streptococcus thermophilus LMD-9]
 gi|55736914|gb|AAV60556.1| signal recognition particle [Streptococcus thermophilus LMG 18311]
 gi|55738836|gb|AAV62477.1| signal recognition particle [Streptococcus thermophilus CNRZ1066]
 gi|116100994|gb|ABJ66140.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Streptococcus thermophilus LMD-9]
          Length = 520

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + M+ A D +R AAIDQLK    + +   
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEQEARPMMIAADIYRPAAIDQLKTLGQQINVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 + A  +     +QA+A K D ++IDTAGRL  +  LM    K +R +K  D   
Sbjct: 161 FDMGTETPAVEIVRNGLEQARANKNDYVLIDTAGRLQIDETLM----KELRDIK--DFAH 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ +L V+D+  GQ A    + F+     TG+++TK+DG  RGG  + I      P+ F 
Sbjct: 215 PNEILLVVDSMIGQEAANVAKEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I D+E F     S+ I G  D
Sbjct: 275 GTGEKITDIETFHPDRMSSRILGMGD 300


>gi|229086398|ref|ZP_04218574.1| Signal recognition particle protein [Bacillus cereus Rock3-44]
 gi|228696914|gb|EEL49723.1| Signal recognition particle protein [Bacillus cereus Rock3-44]
          Length = 449

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAGRLH +  LM  + K+  V K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ +E F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300


>gi|42527592|ref|NP_972690.1| signal recognition particle protein [Treponema denticola ATCC
           35405]
 gi|41818420|gb|AAS12609.1| signal recognition particle protein [Treponema denticola ATCC
           35405]
 gi|325474449|gb|EGC77636.1| signal recognition particle protein [Treponema denticola F0402]
          Length = 443

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 140/288 (48%), Gaps = 19/288 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDV----SVQRVLYD 87
           I+ + ++D + EE++  L+ +D+ + V ++ +    EE   +R  K V       +++YD
Sbjct: 22  ITEKNIEDTI-EEIKTALLDADVNLRVVRRFINATAEEAKGERVLKSVDPGQQFTKIVYD 80

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
               +   L    K  +        VIL +G+ G GKTT   KL+ K+ + G K +L A 
Sbjct: 81  K---MTSFLGDEKKALDLRGPDTQSVILFLGLQGSGKTTSAAKLALKLKNEGRKPLLVAC 137

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D  R AA++QL +     S   V  E   DA  +A  A   A+    D +I+DTAGRL  
Sbjct: 138 DLIRPAAVEQLSVLGGNISVP-VYKEETKDAVKVAKNALAFAKKNFYDTVIVDTAGRLQI 196

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  +M  I  +   +K      P   + V D+ TGQ+A+   + F    G +GLI+TK D
Sbjct: 197 DEDMMKEIVNIKSAVK------PMETILVADSMTGQSAVDVAKEFDEQVGLSGLILTKFD 250

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              RGG  + +      P++++G GE + DLEPF     ++ I G  D
Sbjct: 251 SDTRGGAALSLKTITGKPIFYIGTGEKLEDLEPFYPDRIASRILGMGD 298


>gi|120599794|ref|YP_964368.1| signal recognition particle protein [Shewanella sp. W3-18-1]
 gi|146292270|ref|YP_001182694.1| signal recognition particle protein [Shewanella putrefaciens CN-32]
 gi|120559887|gb|ABM25814.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           sp. W3-18-1]
 gi|145563960|gb|ABP74895.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           putrefaciens CN-32]
          Length = 457

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72
           F + + +L   + +I    RL ++ V+E L ++   L+ +D+ + V ++ V    E  + 
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  AK +S  Q  +  V   + K +   ++  +   +  P V+++ G+ G GKTT + KL
Sbjct: 62  QEVAKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVLMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +     K V++ + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLAAEVDVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+IIDTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIIDTAGRLHVDEAMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|312795094|ref|YP_004028016.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54 [Burkholderia
           rhizoxinica HKI 454]
 gi|312166869|emb|CBW73872.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54 [Burkholderia
           rhizoxinica HKI 454]
          Length = 480

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK   ++  ADF
Sbjct: 129 PAVILMAGLQGAGKTTTVGKLAKLLREMQKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 188

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+       +A +A   A+    DVLI+DTAGRL  +  +M  I  +   LK      
Sbjct: 189 FPSQPDQKPLDIARDALDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHAQLK------ 242

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 243 PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGRPIKFV 302

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE ++ LE F  +  +  I G  D
Sbjct: 303 GVGEKLDGLETFYPERMANRILGMGD 328


>gi|293365278|ref|ZP_06611995.1| signal recognition particle protein [Streptococcus oralis ATCC
           35037]
 gi|307703819|ref|ZP_07640760.1| signal recognition particle protein [Streptococcus oralis ATCC
           35037]
 gi|291316728|gb|EFE57164.1| signal recognition particle protein [Streptococcus oralis ATCC
           35037]
 gi|307622654|gb|EFO01650.1| signal recognition particle protein [Streptococcus oralis ATCC
           35037]
          Length = 523

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQA   D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVIDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|33595209|ref|NP_882852.1| signal recognition particle protein [Bordetella parapertussis
           12822]
 gi|33599497|ref|NP_887057.1| signal recognition particle protein [Bordetella bronchiseptica
           RB50]
 gi|33565286|emb|CAE36085.1| signal recognition particle protein [Bordetella parapertussis]
 gi|33567093|emb|CAE31006.1| signal recognition particle protein [Bordetella bronchiseptica
           RB50]
          Length = 469

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 141/292 (48%), Gaps = 36/292 (12%)

Query: 48  ELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           E+   L+ +D+ + V +  V    E+ L +  A  +S  + L  V   +HK L  L    
Sbjct: 33  EVRMALLEADVALPVVRDFVARVKEKALGEEVAGSLSPGQALVGV---VHKELTSL---M 86

Query: 104 NWDF----------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA----------GLKVM 143
             D           +  P VIL+ G+ G GKTT  GKL++ +S+             KV+
Sbjct: 87  GGDLGEHAGELSLATQPPAVILMAGLQGAGKTTTTGKLARWLSEGQHVQGGRKTGKKKVL 146

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           + + D +R AAI+QLK  A +   DF+ S++      +A  A   A+    DVLI+DTAG
Sbjct: 147 VVSADVYRPAAIEQLKTVAAQVGVDFLPSDVSQKPEDIARNAIDHARRHHYDVLIVDTAG 206

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RL  +  +M    + IR L   D   P   L V+DA  GQ+A+     F      TG+++
Sbjct: 207 RLGIDEAMM----REIRALH--DLVKPIETLFVVDAMQGQDAVNTARAFGDALPLTGVVL 260

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TK+DG ARGG  + +      P+ F+GV E ++ LEPF  +  +  + G  D
Sbjct: 261 TKLDGDARGGAALSVRHVTGKPLKFVGVSEKLDGLEPFHPERMAQRVLGMGD 312


>gi|114652596|ref|XP_001135953.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]
          Length = 451

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|30021933|ref|NP_833564.1| signal recognition particle protein [Bacillus cereus ATCC 14579]
 gi|218235010|ref|YP_002368646.1| signal recognition particle protein [Bacillus cereus B4264]
 gi|218898998|ref|YP_002447409.1| signal recognition particle protein [Bacillus cereus G9842]
 gi|228902348|ref|ZP_04066505.1| Signal recognition particle protein [Bacillus thuringiensis IBL
           4222]
 gi|228909670|ref|ZP_04073493.1| Signal recognition particle protein [Bacillus thuringiensis IBL
           200]
 gi|228922599|ref|ZP_04085899.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228940933|ref|ZP_04103492.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228954121|ref|ZP_04116150.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228960061|ref|ZP_04121725.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228973862|ref|ZP_04134438.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980452|ref|ZP_04140762.1| Signal recognition particle protein [Bacillus thuringiensis Bt407]
 gi|229071343|ref|ZP_04204566.1| Signal recognition particle protein [Bacillus cereus F65185]
 gi|229111316|ref|ZP_04240869.1| Signal recognition particle protein [Bacillus cereus Rock1-15]
 gi|229129121|ref|ZP_04258094.1| Signal recognition particle protein [Bacillus cereus BDRD-Cer4]
 gi|229152044|ref|ZP_04280239.1| Signal recognition particle protein [Bacillus cereus m1550]
 gi|229162781|ref|ZP_04290738.1| Signal recognition particle protein [Bacillus cereus R309803]
 gi|229180121|ref|ZP_04307465.1| Signal recognition particle protein [Bacillus cereus 172560W]
 gi|29897489|gb|AAP10765.1| Signal recognition particle, subunit Ffh/SRP54 [Bacillus cereus
           ATCC 14579]
 gi|218162967|gb|ACK62959.1| signal recognition particle protein [Bacillus cereus B4264]
 gi|218540894|gb|ACK93288.1| signal recognition particle protein [Bacillus cereus G9842]
 gi|228603330|gb|EEK60807.1| Signal recognition particle protein [Bacillus cereus 172560W]
 gi|228620663|gb|EEK77532.1| Signal recognition particle protein [Bacillus cereus R309803]
 gi|228631393|gb|EEK88027.1| Signal recognition particle protein [Bacillus cereus m1550]
 gi|228654358|gb|EEL10223.1| Signal recognition particle protein [Bacillus cereus BDRD-Cer4]
 gi|228672092|gb|EEL27383.1| Signal recognition particle protein [Bacillus cereus Rock1-15]
 gi|228711797|gb|EEL63749.1| Signal recognition particle protein [Bacillus cereus F65185]
 gi|228779272|gb|EEM27529.1| Signal recognition particle protein [Bacillus thuringiensis Bt407]
 gi|228785887|gb|EEM33890.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228799577|gb|EEM46530.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805687|gb|EEM52277.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228818769|gb|EEM64835.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228837028|gb|EEM82369.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228849959|gb|EEM94790.1| Signal recognition particle protein [Bacillus thuringiensis IBL
           200]
 gi|228857317|gb|EEN01820.1| Signal recognition particle protein [Bacillus thuringiensis IBL
           4222]
 gi|326941614|gb|AEA17510.1| signal recognition particle protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 449

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAGRLH +  LM  + K+  V K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ +E F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300


>gi|329575670|gb|EGG57197.1| SRP54-type protein, GTPase domain protein [Enterococcus faecalis
           TX1467]
          Length = 120

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 76/109 (69%)

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q + F      
Sbjct: 1   MDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQAKQFKETTNF 60

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 61  TGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 109


>gi|229031475|ref|ZP_04187475.1| Signal recognition particle protein [Bacillus cereus AH1271]
 gi|229174511|ref|ZP_04302043.1| Signal recognition particle protein [Bacillus cereus MM3]
 gi|228609071|gb|EEK66361.1| Signal recognition particle protein [Bacillus cereus MM3]
 gi|228729764|gb|EEL80744.1| Signal recognition particle protein [Bacillus cereus AH1271]
          Length = 449

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAGRLH +  LM  + K+  V K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ +E F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300


>gi|327309164|ref|XP_003239273.1| signal sequence receptor alpha subunit [Trichophyton rubrum CBS
           118892]
 gi|326459529|gb|EGD84982.1| signal sequence receptor alpha subunit [Trichophyton rubrum CBS
           118892]
          Length = 650

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 138/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLY-DVSELIHKMLMP----- 98
           +ED L++ ++    A ++ E    EL+ K+ A   S+   L   +   + K+L P     
Sbjct: 361 MEDHLLKKNVACEAAVRLCEGVQKELVGKKTASFQSIDSALRAGMESSLRKILTPTTSLD 420

Query: 99  -------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                  ++ P N     RP+VI VVGVNGVGK+T + KL   +     KV++AA DTFR
Sbjct: 421 LLREIEVVTSPMNQQQPRRPYVISVVGVNGVGKSTNLSKLCFFLLQNKYKVLIAACDTFR 480

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A   A +   +V++ID
Sbjct: 481 SGAVEQLRVHA-RNLKELSARENAGHVELYEKGYGKDAANVAKDAVAYAASNDFEVVLID 539

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +         P  +L V +A  G +++ Q   F+   G   
Sbjct: 540 TAGRRHNDQRLMSSLEKFAKFAN------PDKILMVGEALVGTDSVMQARNFNQAFGPGR 593

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 594 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 636


>gi|163733910|ref|ZP_02141352.1| signal recognition particle protein, putative [Roseobacter
           litoralis Och 149]
 gi|161393021|gb|EDQ17348.1| signal recognition particle protein, putative [Roseobacter
           litoralis Och 149]
          Length = 503

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 138/269 (51%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+ +  K   + V+      Q+V+  V + +  +L    +P     
Sbjct: 38  LLEADVSLPVARDFVKAVQEKATGQAVTKSITPGQQVVKIVHDALIDVLKGEGEPGTLKV 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  +L+VG+ G GKTT   KL+K++ +  G +V++A+ D  R AA++QL I   +  
Sbjct: 98  DNPPAPVLMVGLQGSGKTTTTAKLAKRLKEKDGKRVLMASLDVNRPAAMEQLAILGAQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G D  A+A  A  QA     DV ++DTAGRL  +  LM  + + +R     D
Sbjct: 158 VDTLPIIAGQDPVAIAKRAKTQAGLGGYDVYMLDTAGRLSIDEELMQQV-EAVR-----D 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ+A+   + F    G +G+++T+MDG  RGG  + +      P+
Sbjct: 212 VANPRETLLVVDGLTGQDAVHTAQNFDERIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F     +  I G  D
Sbjct: 272 KFVGLGEKMDALETFEPDRVAGRILGMGD 300


>gi|70728475|ref|YP_258224.1| signal recognition particle protein [Pseudomonas fluorescens Pf-5]
 gi|68342774|gb|AAY90380.1| signal recognition particle protein [Pseudomonas fluorescens Pf-5]
          Length = 458

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 157/306 (51%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D +     P V+L+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVVLMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S++     A+A  A K+A
Sbjct: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDLSQKPVAIAEAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH +S +M  I  +   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFIDVVIVDTAGRLHIDSEMMDEIQALHAAIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF  +  ++ 
Sbjct: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPERIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|313894639|ref|ZP_07828202.1| signal recognition particle protein [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313440829|gb|EFR59258.1| signal recognition particle protein [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 450

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 156/318 (49%), Gaps = 36/318 (11%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F S S KL+E    +     I+   ++  +R+ +   L+ +D+   VA+  V+ +  K  
Sbjct: 3   FDSLSEKLQEAFQSLKGKGKITEEDVNLALRQ-VRTALLEADVNFMVAKDFVKSIKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++V       Q V+  V++ +  +L       M  SKP        P +I++VG+ G G
Sbjct: 62  GEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMISSKP--------PTIIMLVGLQGAG 113

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALA 182
           KTT  GKL+  +   G   ML A D +R AAI QL++   +        E  G++   + 
Sbjct: 114 KTTTAGKLAVYLRKQGKHPMLVAADVYRPAAITQLQVVGKQIDIPVFADETPGANPVDIV 173

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             A +Q+     DV+IIDTAGRL  + +LM  +  +   ++      PH +L V+D+  G
Sbjct: 174 RRAVEQSTHMLKDVVIIDTAGRLAIDEVLMDELSNIKAAVR------PHEILLVVDSMIG 227

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+   + F+   G  G+I+TK+DG ARGG  + I     +P+ F GV E ++  + F 
Sbjct: 228 QDAVTTAQTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFY 287

Query: 303 AKDFSAVITGCLDYGEEK 320
               ++ I   LD G+ K
Sbjct: 288 PDRMASRI---LDLGDFK 302


>gi|229047532|ref|ZP_04193122.1| Signal recognition particle protein [Bacillus cereus AH676]
 gi|229081100|ref|ZP_04213610.1| Signal recognition particle protein [Bacillus cereus Rock4-2]
 gi|229146416|ref|ZP_04274787.1| Signal recognition particle protein [Bacillus cereus BDRD-ST24]
 gi|229192014|ref|ZP_04318984.1| Signal recognition particle protein [Bacillus cereus ATCC 10876]
 gi|228591565|gb|EEK49414.1| Signal recognition particle protein [Bacillus cereus ATCC 10876]
 gi|228637049|gb|EEK93508.1| Signal recognition particle protein [Bacillus cereus BDRD-ST24]
 gi|228702144|gb|EEL54620.1| Signal recognition particle protein [Bacillus cereus Rock4-2]
 gi|228723779|gb|EEL75134.1| Signal recognition particle protein [Bacillus cereus AH676]
          Length = 436

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 88  PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 145

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAGRLH +  LM  + K+  V K    
Sbjct: 146 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 201

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 202 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 259

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ +E F  +  ++ I G  D
Sbjct: 260 FAGMGEKLDAIEAFHPERMASRILGMGD 287


>gi|311746104|ref|ZP_07719889.1| signal recognition particle protein [Algoriphagus sp. PR1]
 gi|126576323|gb|EAZ80601.1| signal recognition particle protein [Algoriphagus sp. PR1]
          Length = 444

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 136/273 (49%), Gaps = 11/273 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSELIHKMLMPLSKP 102
           +E+   LI +D+   VA+++ +++  +   +DV    S  ++L  +++     LM  +K 
Sbjct: 32  KEIRRALIDADVNYKVAKEVTDKIKQEALGRDVLISVSPGQLLVKITQEELTKLMGGTK- 90

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
              + S  P V+L+ G+ G GKTT  GKL+  +   G +V+L A D +R AAIDQLK+  
Sbjct: 91  VEINLSGDPSVVLISGLQGSGKTTFSGKLASLLKKQGRQVLLVACDIYRPAAIDQLKVLG 150

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           ++   +        +A  +A  A   A+      +I+DTAGRL  +  +M  I  + + L
Sbjct: 151 EQVGVEVYAEPENKNALEIANNAIAYAKKSGKKTVIVDTAGRLAVDEQMMQEIEALKKAL 210

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                  P   L V+D+ TGQ+A+   + F       G+++TK+DG  RGG  I I    
Sbjct: 211 N------PSETLFVVDSMTGQDAVNTAKTFDERLDFNGVVLTKLDGDTRGGAAISIRHVV 264

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+  GE + +++ F     S  I G  D
Sbjct: 265 NKPIKFISTGEKMENIDVFHPDRMSQRILGMGD 297


>gi|114048412|ref|YP_738962.1| signal recognition particle protein [Shewanella sp. MR-7]
 gi|113889854|gb|ABI43905.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           sp. MR-7]
          Length = 457

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72
           F + + +L   + +I    RL ++ V+E L ++   L+ +D+ + V ++ V    E  + 
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  AK +S  Q  +  V   + K +   ++  +   +  P V+++ G+ G GKTT + KL
Sbjct: 62  QEVAKSLSPGQAFIKIVQSELEKSMGEANQALDL-ATQPPAVVMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +     K V++ + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|113971174|ref|YP_734967.1| signal recognition particle protein [Shewanella sp. MR-4]
 gi|117921457|ref|YP_870649.1| signal recognition particle protein [Shewanella sp. ANA-3]
 gi|113885858|gb|ABI39910.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           sp. MR-4]
 gi|117613789|gb|ABK49243.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           sp. ANA-3]
          Length = 457

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIV----EELLT 72
           F + + +L   + +I    RL ++ V+E L ++   L+ +D+ + V ++ V    E  + 
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  AK +S  Q  +  V   + K +   ++  +   +  P V+++ G+ G GKTT + KL
Sbjct: 62  QEVAKSLSPGQAFIKIVQSELEKSMGEANQALDL-ATQPPAVVMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +     K V++ + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|306829387|ref|ZP_07462577.1| signal recognition particle protein [Streptococcus mitis ATCC 6249]
 gi|304428473|gb|EFM31563.1| signal recognition particle protein [Streptococcus mitis ATCC 6249]
          Length = 523

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQA   D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVIDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|166031990|ref|ZP_02234819.1| hypothetical protein DORFOR_01692 [Dorea formicigenerans ATCC
           27755]
 gi|166028443|gb|EDR47200.1| hypothetical protein DORFOR_01692 [Dorea formicigenerans ATCC
           27755]
          Length = 452

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 150/304 (49%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++ S  RL +  V+E L+++   L+ +D+   V +  ++ +  +   
Sbjct: 3   FDSLTEKLQNVFKNLRSKGRLTEADVQEALKEIKRALLAADVNFKVVKDFIKTVQERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E +  ++   +            VI++ G+ G GKTT   KL
Sbjct: 63  QDVMNGLNPGQMVIKIVNEELCNLMGSETTEIKLQPGSAITVIMMAGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G K +L A D +R AAI QL+I  ++   +          A +A  A + AQ 
Sbjct: 123 AGKFKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFTMGDNHKPANIAKAAIEHAQK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+   + 
Sbjct: 183 NGNNLVILDTAGRLHIDEDMMAELEEIKNTV------TVHQTILVIDAMTGQDAVNVAKE 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+I+TK+DG  RGG  + +      P+ ++G+GE ++DLE F     +  I 
Sbjct: 237 FDEKIGVDGVIVTKLDGDTRGGAALSVKAVTGKPILYVGMGEKLSDLEQFYPDRMANRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|83951198|ref|ZP_00959931.1| signal recognition particle protein [Roseovarius nubinhibens ISM]
 gi|83839097|gb|EAP78393.1| signal recognition particle protein [Roseovarius nubinhibens ISM]
          Length = 503

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 135/269 (50%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  +  +  +   + V+      Q+V+  V + + + L     P     
Sbjct: 38  LLEADVSLPVARDFIARVQDQATGQSVTKSVTPGQQVVKIVHDALVETLRGEGDPGALKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT   KL+K++ +  G +V++A+ D  R AA++QL+I   +  
Sbjct: 98  DNPPAPILMVGLQGSGKTTTTAKLAKRLKERDGKRVLMASLDVNRPAAMEQLQILGQQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G D  A+A  A  QA     DV ++DTAGRLH ++ L+     +       D
Sbjct: 158 VDTLPIVKGEDPVAIAKRAKTQASLGGYDVYMLDTAGRLHIDAELIQQAADV------RD 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ+A+     F    G TG+++T+MDG  RGG  + +      P+
Sbjct: 212 VANPRETLLVVDGLTGQDAVNVATEFDDKIGVTGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F     +  I G  D
Sbjct: 272 RFVGLGEKMDALETFEPDRIAGRILGMGD 300


>gi|323484786|ref|ZP_08090143.1| hypothetical protein HMPREF9474_01894 [Clostridium symbiosum
           WAL-14163]
 gi|323691859|ref|ZP_08106113.1| signal recognition particle protein [Clostridium symbiosum
           WAL-14673]
 gi|323401892|gb|EGA94233.1| hypothetical protein HMPREF9474_01894 [Clostridium symbiosum
           WAL-14163]
 gi|323504066|gb|EGB19874.1| signal recognition particle protein [Clostridium symbiosum
           WAL-14673]
          Length = 454

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 152/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++    RL +  V+  L+++   L+ +D+   V ++ +  +  +   
Sbjct: 3   FESLADKLQNVFKNLTGKGRLSEADVKAGLKEVKMALLEADVSFKVVKQFINSVQEQAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q V+  V++ + K++           S+   VI++ G+ G GKTT   K+
Sbjct: 63  TDVLNGLHPGQMVIKIVNDELVKLMGSEMTEIALKPSNEITVIMMAGLQGAGKTTTTAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G   +LAA D +R AA++QL+   ++          G     +A  A + A  
Sbjct: 123 AGKLKAKGRNPLLAACDVYRPAAVEQLQKNGEKQGVPVFSMGTGHKPVNIAKAAIEHASK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +V+IIDTAGRLH +  +M    +++ + + +D +     L V+DA TGQ+A+    M
Sbjct: 183 NGHNVVIIDTAGRLHIDEDMM---NELVEIKENVDVY---QTLLVVDAMTGQDAVNVAGM 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TKMDG  RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FNDKIGIDGVILTKMDGDTRGGAALSIKAVTGKPIIYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|291403728|ref|XP_002718183.1| PREDICTED: signal recognition particle 54kDa isoform 1 [Oryctolagus
           cuniculus]
          Length = 504

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|291515775|emb|CBK64985.1| signal recognition particle subunit FFH/SRP54 (srp54) [Alistipes
           shahii WAL 8301]
          Length = 443

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 135/273 (49%), Gaps = 10/273 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNW 105
           +E+   LI +D+   VA+   +E+  K   +DV    +    +++++   L  L      
Sbjct: 32  KEIRRALIDADVNYKVAKTFTDEVKQKALGQDVLKAVKPGQMMTKIVRDELAELMGGTAT 91

Query: 106 D--FSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           D      P VIL+ G+ G GKTT  GKL+  + S  G +V+L AGD +R AAIDQLK+  
Sbjct: 92  DIRLEGTPAVILIAGLQGSGKTTFSGKLASLLKSKKGRQVLLVAGDVYRPAAIDQLKVLG 151

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +   +    E   +   +A    K A+ K  +V+I+DTAGRL  +  +M  I  +   +
Sbjct: 152 GQIGVEVYTEEGNRNPVEIAENGIKYARQKNYNVVIVDTAGRLAVDEAMMQEITAIKAAV 211

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           K      P   L V+DA TGQ+A+     F+      G+++TK+DG  RGG  I I    
Sbjct: 212 K------PSETLFVVDAMTGQDAVNTAREFNERLDFDGVVLTKLDGDTRGGAAISIRSVV 265

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+  GE ++ L+ F  +  +  I G  D
Sbjct: 266 NKPLKFISSGEKMDALQVFHPERMADRILGMGD 298


>gi|228966791|ref|ZP_04127835.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228792890|gb|EEM40448.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 360

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAGRLH +  LM  + K+  V K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ +E F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300


>gi|152991963|ref|YP_001357684.1| signal recognition particle protein [Sulfurovum sp. NBC37-1]
 gi|151423824|dbj|BAF71327.1| signal recognition particle protein [Sulfurovum sp. NBC37-1]
          Length = 452

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 142/272 (52%), Gaps = 13/272 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVE--ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           EL+  L+++D+   V + ++   EL TK+    V     L  + + +  +L     P  +
Sbjct: 31  ELKKSLLKADVHHKVVKDLISSVELETKKNG--VGKDNFLKALQDKLTDILTIEGAPKGF 88

Query: 106 DFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWAD 163
            F+ +P  V+L++G+ G GKTT  GKL+  + +   K V++ A D  R AA++QL+    
Sbjct: 89  TFASKPPTVVLMIGLQGSGKTTTTGKLAYFLKEQKKKKVLVVAADLQRLAAVEQLRQITS 148

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +   D V  E  +    +   A K+A+ +  DV++IDTAGRL  +  LM  + ++ +V  
Sbjct: 149 QIDVDLVADE-NATPTEIVKRALKKAEDELYDVVLIDTAGRLAIDDELMDELAEVKKVAN 207

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P  +  V DA TGQ+A+R  + F    G TG+I+TK DG ++GG  + +     
Sbjct: 208 ------PDELFYVADAMTGQDAVRTAQTFKDKIGITGVILTKFDGDSKGGVALGLTQQVG 261

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +P+ F+G GE + DLE F+     + + G  D
Sbjct: 262 VPLRFIGAGEKMPDLEQFIPDRIVSRLMGAGD 293


>gi|104774249|ref|YP_619229.1| Signal recognition particle protein Ffh [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514339|ref|YP_813245.1| Signal recognition particle GTPase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|103423330|emb|CAI98173.1| Signal recognition particle protein Ffh [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093654|gb|ABJ58807.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 476

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 160/321 (49%), Gaps = 32/321 (9%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E+LS   +L K   + + K K    DI ++ R       E+   L+ +D+   V + 
Sbjct: 1   MAFENLS--ERLQKALRNLTGKGKISEEDINAASR-------EIRLALLEADVNFKVVKD 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILV 116
            ++ +  +   ++V       Q+V+  V+E + KM+    + L+K       H P VI++
Sbjct: 52  FIKTIKKRALGQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-----PHIPTVIMM 106

Query: 117 VGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLK-IWADRTSADFVCSEI 174
           VG+ G GKTT +GKL+ + M +   +  L AGD +R AAIDQLK I AD     +   E 
Sbjct: 107 VGLQGTGKTTTVGKLAYRLMKEEKARPFLIAGDIYRPAAIDQLKQIGADLKVPVYSDPEE 166

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            S  A +  +   +A   + D +IIDTAGRL  +  LM  + ++  V        P ++L
Sbjct: 167 KS-VAKIVEDGLAEAAVHRNDYVIIDTAGRLEIDEPLMKELEEVKAV------SQPDNIL 219

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA TGQ A    + F+     TG+I+TK+DG  RGG  + I      P+ F G GE 
Sbjct: 220 LVVDAMTGQVAADVAKTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEK 279

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           + DLE F     ++ I G  D
Sbjct: 280 LTDLEVFHPDRMASRILGMGD 300


>gi|294339024|emb|CAZ87371.1| Signal recognition particle protein (Fifty-four homolog) (p48)
           [Thiomonas sp. 3As]
          Length = 449

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 151/321 (47%), Gaps = 40/321 (12%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           ++ LS + K  KG A  +   +  I D++   RL           L+ +D+ + V ++  
Sbjct: 6   TQRLSRVVKTLKGEARIT---ESNIQDMLREVRL----------ALLEADVALPVVREFT 52

Query: 68  EELLTKRYAKDVS------------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
             +  K   +DV             VQR L D       ++   + P N   +  P ++L
Sbjct: 53  ARVKEKALGQDVVGSLTPGQALVGVVQRELAD-------LMGGDAVPINL-ATQPPAIVL 104

Query: 116 VVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + G+ G GKTT   KL++ +++    KV+  + D +R AAI QL+    +  A+F  S  
Sbjct: 105 MAGLQGAGKTTTTAKLARLLTERQKKKVLTVSCDVYRPAAIAQLQTVTAQAGAEFFPSSP 164

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
                 +A  A + A++   DVL++DTAGRL  +  +M  I ++   LK      P   L
Sbjct: 165 DDKPLDIARRAVEFARSHHFDVLLVDTAGRLSVDEAMMREIKELHGALK------PIETL 218

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A+     FH     TG+++TK+DG ARGG  + +      P+ F GV E 
Sbjct: 219 FVVDAMQGQDAVNTARAFHDTLPLTGIVLTKLDGDARGGAALSVRQVTGAPIKFAGVSEK 278

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           I+ LEPF  +  +  I G  D
Sbjct: 279 IDGLEPFDPRRMADRILGMGD 299


>gi|315613041|ref|ZP_07887952.1| signal recognition particle protein [Streptococcus sanguinis ATCC
           49296]
 gi|315315151|gb|EFU63192.1| signal recognition particle protein [Streptococcus sanguinis ATCC
           49296]
          Length = 523

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +     
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                   A  +  +  +QAQA   D ++IDTAGRL  + +LM      +R +K L    
Sbjct: 161 FALGTKVPAVEIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL--AQ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ F 
Sbjct: 215 PNEILLVIDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I D+E F     S+ I G  D
Sbjct: 275 GTGEKITDIETFHPDRMSSRILGMGD 300


>gi|291059955|gb|ADD72690.1| signal recognition particle-docking protein FtsY [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 293

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 145/272 (53%), Gaps = 13/272 (4%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ---RVLY-DVSELIHKML 96
           LD+     LE+LLI  D+ ++ A+    +L      + V  +   R L+ ++ E   ++ 
Sbjct: 20  LDETFFSALEELLIEGDLSLSTAESFCTQLRNAARTRSVHTEDALRTLFAEIMESCVRVT 79

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAI 155
                P      ++  + L++GVNG GKTT   KL+       +  ++ AA DTFR+AA 
Sbjct: 80  HLAPNP------NQCSLYLLLGVNGSGKTTSAAKLAAYYQTQKVHPILFAAADTFRAAAA 133

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL     +     +    G D AA+ ++A +  +A+K  +L++DTAGRLHN + L+A +
Sbjct: 134 EQLAHHGAQLGVRVIAHPGGKDPAAVVFDAGEALRAQKRGLLLVDTAGRLHNKTHLIAEL 193

Query: 216 GKMIRVLK-RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
            K+ R+ + ++   A   +L VLDATTGQNA RQ + FH   G   L++ K D  ARGG 
Sbjct: 194 QKIDRIAQTKVSADAYRKIL-VLDATTGQNAFRQAQTFHEAIGVDALLLAKCDTRARGGA 252

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +  I+    IP+ FLG GE   DL    A++F
Sbjct: 253 VFSIMQELGIPLAFLGWGERYTDLVEANAREF 284


>gi|258406146|ref|YP_003198888.1| signal recognition particle protein [Desulfohalobium retbaense DSM
           5692]
 gi|257798373|gb|ACV69310.1| signal recognition particle protein [Desulfohalobium retbaense DSM
           5692]
          Length = 493

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VI++VG+ G GKTT   KL+ ++       +L   D +R AAIDQL   A        
Sbjct: 100 PRVIMLVGLQGSGKTTSSAKLALQLRRDNHAPLLVPADVYRPAAIDQLHRLASEIDIPAY 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S    +   +  +A ++A+    D +++DTAGRLH +  LM  + ++  V       AP
Sbjct: 160 PSTSEMNPVDICRDALEKARENGQDTVLLDTAGRLHVDEKLMDELARIKEVC------AP 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V DA TGQ+A+   E F  +   TG+++TKM+G ARGG  + I      P+ ++G
Sbjct: 214 SEILLVADAMTGQDAVNVAERFDELLDLTGVVLTKMEGDARGGAALSIKSITGKPIKYMG 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           VGE + D+E F     ++ I G  D
Sbjct: 274 VGEKLKDIEAFYPDRVASRILGMGD 298


>gi|255534965|ref|YP_003095336.1| Signal recognition particle, subunit Ffh SRP54 [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341161|gb|ACU07274.1| Signal recognition particle, subunit Ffh SRP54 [Flavobacteriaceae
           bacterium 3519-10]
          Length = 455

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 140/278 (50%), Gaps = 20/278 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPLS 100
           +E+   L+ +D+   VA+      LTKR       Q VL  +S      +++H  L+ L 
Sbjct: 32  KEIRRALVDADVNYKVAKD-----LTKRVQDKALGQNVLTSLSPGQLMTKIVHDELVDLM 86

Query: 101 KPFNW--DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQ 157
              +   + S +P VIL+ G+ G GKTT  GKL+  + +    K +L A D +R AAI+Q
Sbjct: 87  GKTHEGINLSGKPSVILIAGLQGSGKTTFSGKLANYLKEKRNKKPLLVACDVYRPAAIEQ 146

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LKI   +T       E   + +++A  A K A+    DV+I+DTAGRL  +  +M  I  
Sbjct: 147 LKILGQQTGIPVYTEEGALNPSSIAENAVKFAKENNHDVVIVDTAGRLAIDEQMMNEIKS 206

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +   +K      P+  L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + 
Sbjct: 207 VHYFIK------PNETLFVVDSMTGQDAVNTAKAFNEALNFDGVVLTKLDGDTRGGAALT 260

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I    + P+ F+  GE +  L+ F  +  +  I G  D
Sbjct: 261 IRSVVEKPIKFISTGEKMEALDVFYPERMADRILGMGD 298


>gi|83855061|ref|ZP_00948591.1| signal recognition particle protein [Sulfitobacter sp. NAS-14.1]
 gi|83842904|gb|EAP82071.1| signal recognition particle protein [Sulfitobacter sp. NAS-14.1]
          Length = 502

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+ +  K   + V+      Q+V+  V + +   L    +P     
Sbjct: 38  LLEADVSLPVARDFVKAVQDKATGQAVTKSITPGQQVVKIVHDALIDTLKGEGEPGALKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P  IL+VG+ G GKTT   KL+K++ D  G +V++A+ D  R AA++QL I   +  
Sbjct: 98  DSPPAPILMVGLQGSGKTTTTAKLAKRLKDRDGKRVLMASLDVNRPAAMEQLAILGVQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G +   +A  A  QA     DV ++DTAGRL  +  LM  + + +R     D
Sbjct: 158 VDTLPIVKGENPVQIAKRAKTQASMGGYDVYMLDTAGRLSIDEELMRQV-EAVR-----D 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ+A++  E F+   G +G+++T+MDG  RGG  + +      P+
Sbjct: 212 VANPRETLLVVDGLTGQDAVQTAENFNDRIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F  +  +  I G  D
Sbjct: 272 KFVGLGEKMDALETFEPERIAGRILGMGD 300


>gi|307199091|gb|EFN79801.1| Signal recognition particle 54 kDa protein [Harpegnathos saltator]
          Length = 506

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 106/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+VI+ VG+ G GKTT   KL+        K  L   DTFR+ A DQ+K  A +    F
Sbjct: 100 RPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A +     + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEVDPVTIAQDGVDMFKKEGYEIIIVDTSGRHKQEESLFE---EMLQVANAVQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DAT GQ    Q + F        +I+TK+DG A+GGG +  V   + PV F+
Sbjct: 216 --NIIFVMDATIGQACEAQAKAFKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFV 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+DLEPF  K F + + G  D
Sbjct: 274 GTGEHIDDLEPFKTKPFISKLLGMGD 299


>gi|322374427|ref|ZP_08048941.1| signal recognition particle protein [Streptococcus sp. C300]
 gi|331266505|ref|YP_004326135.1| signal recognition particle protein [Streptococcus oralis Uo5]
 gi|321279927|gb|EFX56966.1| signal recognition particle protein [Streptococcus sp. C300]
 gi|326683177|emb|CBZ00795.1| signal recognition particle protein [Streptococcus oralis Uo5]
          Length = 523

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQA   D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVIDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|227503356|ref|ZP_03933405.1| signal recognition particle protein [Corynebacterium accolens ATCC
           49725]
 gi|306836401|ref|ZP_07469379.1| signal recognition particle protein [Corynebacterium accolens ATCC
           49726]
 gi|227075859|gb|EEI13822.1| signal recognition particle protein [Corynebacterium accolens ATCC
           49725]
 gi|304567761|gb|EFM43348.1| signal recognition particle protein [Corynebacterium accolens ATCC
           49726]
          Length = 546

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 26/282 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  ++ +  +    +VS      Q+V+  V+E + ++L   ++  N   
Sbjct: 38  LLEADVSLTVVRGFIKRIKERARGAEVSEALNPAQQVVKIVNEELIEILGGETRRLNL-A 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
            + P VI++ G+ G GKTT+ GKL+K ++  G   ML A D  R  A+ QL+I  +R   
Sbjct: 97  KNPPTVIMLAGLQGAGKTTLAGKLAKHLTKQGHTPMLVACDLQRPGAVQQLQIVGERAEV 156

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   TS D    E+G+   D   +A     +A+ K+ DV+IIDTAGRL  +  LM 
Sbjct: 157 PTFAPDPGTSLDSNDHEMGTSHGDPVDVAKRGIAEAKQKQHDVVIIDTAGRLGIDETLMT 216

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              + IR     D   P  VL V+D+  GQ+A++  E F      TG+++TK+DG ARGG
Sbjct: 217 Q-ARNIR-----DAVNPDEVLFVIDSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGG 270

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ +   GE ++D + F  +  S+ I G  D
Sbjct: 271 AALSIREVTGKPILYASTGEKLDDFDVFHPERMSSRILGMGD 312


>gi|313205775|ref|YP_004044952.1| signal recognition particle subunit ffh/srp54 (srp54) [Riemerella
           anatipestifer DSM 15868]
 gi|312445091|gb|ADQ81446.1| signal recognition particle subunit FFH/SRP54 (srp54) [Riemerella
           anatipestifer DSM 15868]
 gi|315022827|gb|EFT35851.1| signal recognition particle protein [Riemerella anatipestifer
           RA-YM]
 gi|325336784|gb|ADZ13058.1| Ffh [Riemerella anatipestifer RA-GD]
          Length = 454

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 137/278 (49%), Gaps = 20/278 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL- 99
           +E+   L+ +D+   VA+      LTKR  +    Q VL  ++      +++H  L+ L 
Sbjct: 32  KEIRRALVDADVNYKVAKD-----LTKRVQEKALGQNVLTSLTPGQLMTKIVHDELVELM 86

Query: 100 -SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQ 157
                  + S +P VIL+ G+ G GKTT  GKL+  +     K  +L A D +R AAIDQ
Sbjct: 87  GGSQEGINLSGKPTVILIAGLQGSGKTTFSGKLANYLKKKRAKNPLLVACDVYRPAAIDQ 146

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LK+   +T       E   + + +A  A   A+A K DV+I+DTAGRL  +  +M  I  
Sbjct: 147 LKVLGSQTGIPVYTEEENKNPSTIAENAVNFAKANKHDVVIVDTAGRLAIDEQMMNEIKS 206

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +   +K      P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + 
Sbjct: 207 VHYFIK------PTETLFVVDSMTGQDAVNTAKAFNDALNFDGVVLTKLDGDTRGGAALT 260

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I      P+ F+  GE +  L+ F  +  +  I G  D
Sbjct: 261 IRSVVNKPIKFISTGEKMEALDLFYPERMADRILGMGD 298


>gi|227513457|ref|ZP_03943506.1| signal recognition particle protein Ffh [Lactobacillus buchneri
           ATCC 11577]
 gi|227524600|ref|ZP_03954649.1| signal recognition particle protein Ffh [Lactobacillus hilgardii
           ATCC 8290]
 gi|227083330|gb|EEI18642.1| signal recognition particle protein Ffh [Lactobacillus buchneri
           ATCC 11577]
 gi|227088275|gb|EEI23587.1| signal recognition particle protein Ffh [Lactobacillus hilgardii
           ATCC 8290]
          Length = 478

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 12/237 (5%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGL 140
           Q+++  V E + K +   + P N      P VI++ G+ G GKTT +GKL+ K+ ++   
Sbjct: 73  QQIVKIVDEELTKTMGQEAVPLNKS-EKIPTVIMMSGLQGAGKTTTVGKLALKLKNEQNA 131

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLI 198
           + +L A D +R AAI+QL+    +   D    ++G+D     +A    ++A+    D +I
Sbjct: 132 RPLLIADDVYRPAAIEQLQTVGQQ--VDVPVFQLGTDVDPVEIAKRGLEKAKEDHNDYVI 189

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDTAGRL  +  LM  +G + + +       P  +L V+DA TGQNA+   E F      
Sbjct: 190 IDTAGRLQIDEKLMDELGNIKKAVN------PDEILLVIDAMTGQNAVATAEGFDKTLDV 243

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ I G  D
Sbjct: 244 TGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMEDLDVFHPDRMASRILGMGD 300


>gi|317129234|ref|YP_004095516.1| signal recognition particle protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315474182|gb|ADU30785.1| signal recognition particle protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 449

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 115/211 (54%), Gaps = 11/211 (5%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S  P V+++VG+ G GKTT  GKL+  +      K ++ A D +R AAI QL+    +  
Sbjct: 98  SKPPTVVMMVGLQGAGKTTTTGKLANHLRKKHNRKPLMVAADIYRPAAIKQLETLGKQL- 156

Query: 167 ADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            D     +G   +   +A  A ++A+ +  D ++IDTAGRLH +  LM  + + I+ L  
Sbjct: 157 -DMPVFSMGDQVSPVEIAKNAMEKAKEEHHDYVLIDTAGRLHVDEELMGELEE-IKALT- 213

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
               +P  +L V+DA TGQ+A+   E F+   G TG+++TK+DG  RGG  + I      
Sbjct: 214 ----SPDEILLVVDAMTGQDAVNVAESFNERLGITGVVLTKLDGDTRGGAALSIRSVTDT 269

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F G+GE ++ LEPF     ++ I G  D
Sbjct: 270 PIKFAGMGEKVDALEPFHPDRMASRILGMGD 300


>gi|291403730|ref|XP_002718184.1| PREDICTED: signal recognition particle 54kDa isoform 2 [Oryctolagus
           cuniculus]
          Length = 455

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 51  KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 110

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 111 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 166

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 167 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 224

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 225 GTGEHIDDFEPFKTQPFISKLLGMGD 250


>gi|197631999|gb|ACH70723.1| signal recognition particle 54 [Salmo salar]
 gi|209154348|gb|ACI33406.1| Signal recognition particle 54 kDa protein [Salmo salar]
          Length = 504

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KNNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVVIAAEGVEKFKNESFEIIIVDTSGRHKQEDSLFE---EMLQVSNAVQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVEVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+DLEPF  + F + + G  D
Sbjct: 274 GTGEHIDDLEPFKTQPFISKLLGMGD 299


>gi|41055859|ref|NP_957282.1| signal recognition particle 54 kDa protein [Danio rerio]
 gi|28277732|gb|AAH45474.1| Signal recognition particle 54 [Danio rerio]
 gi|45709065|gb|AAH67588.1| Signal recognition particle 54 [Danio rerio]
 gi|182891276|gb|AAI64217.1| Srp54 protein [Danio rerio]
          Length = 504

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KNNVIMFVGLQGSGKTTTCSKLAYYFQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ +++  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVIIAAEGVEKFKSENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAVQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|222097290|ref|YP_002531347.1| signal recognition particle protein [Bacillus cereus Q1]
 gi|221241348|gb|ACM14058.1| signal recognition particle protein [Bacillus cereus Q1]
          Length = 449

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAGRLH +  LM  + ++  V K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAQVKEVAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LE F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300


>gi|255946073|ref|XP_002563804.1| Pc20g13240 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588539|emb|CAP86653.1| Pc20g13240 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 646

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 137/282 (48%), Gaps = 38/282 (13%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +ED L++ ++    A ++ E    E++ K+     S    L+   E  + K+L P S   
Sbjct: 357 MEDHLLKKNVAREAAVRLCEGVKREMIGKKTGNFQSTDAALHVAMESSLRKILTPTSSLD 416

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P     + RP+V+ +VGVNGVGK+T + K+   +     +V++AA DTFR
Sbjct: 417 LLREINAVVAPTTKQQAPRPYVMSIVGVNGVGKSTNLSKICYFLLQNKYRVLIAACDTFR 476

Query: 152 SAAIDQLKIWADRTS----------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           S A++QL++ ADR             +      G DAA +A +A   A A K DV++IDT
Sbjct: 477 SGAVEQLRVHADRLKELSVRENAGDVEIYQKGYGKDAANVAKDAVDYAAANKFDVVLIDT 536

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT--- 258
           AGR HN+  LM+ + K  +         P  +  V +A  G +++ Q   F+   GT   
Sbjct: 537 AGRRHNDQRLMSSLEKFAKFAN------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRN 590

Query: 259 -TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
             G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 591 LDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 632


>gi|313124065|ref|YP_004034324.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280628|gb|ADQ61347.1| Signal recognition particle subunit FFH/SRP54 (Srp54)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 476

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 161/321 (50%), Gaps = 32/321 (9%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E+LS   +L K   + + K K    DI ++ R       E+   L+ +D+   V + 
Sbjct: 1   MAFENLS--ERLQKALRNLTGKGKISEEDINAASR-------EIRLALLEADVNFKVVKD 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILV 116
            ++ +  +   ++V       Q+V+  V+E + KM+    + L+K       H P VI++
Sbjct: 52  FIKTIKKRALGQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-----PHIPTVIMM 106

Query: 117 VGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQL-KIWADRTSADFVCSEI 174
           VG+ G GKTT +GKL+ + M +   +  L AGD +R AAIDQL +I AD     +   E 
Sbjct: 107 VGLQGTGKTTTVGKLAYRLMKEEKARPFLIAGDIYRPAAIDQLEQIGADLKVPVYSDPEE 166

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            S  A +  +   +A   + D +IIDTAGRL  +  LM  + ++  V +      P ++L
Sbjct: 167 KS-VAKIVEDGLAEAAVHRNDYVIIDTAGRLEIDEPLMKELEEVKAVTQ------PDNIL 219

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA TGQ A    + F+     TG+I+TK+DG  RGG  + I      P+ F G GE 
Sbjct: 220 LVVDAMTGQAAADVAKTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEK 279

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           + DLE F     ++ I G  D
Sbjct: 280 LTDLEVFHPDRMASRILGMGD 300


>gi|312869933|ref|ZP_07730072.1| signal recognition particle protein [Lactobacillus oris PB013-T2-3]
 gi|311094518|gb|EFQ52823.1| signal recognition particle protein [Lactobacillus oris PB013-T2-3]
          Length = 480

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 140/280 (50%), Gaps = 16/280 (5%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96
           +RE + ++   L+ +D+   V +  V+ +  K    +V       Q+++  V++ + K++
Sbjct: 28  LRETMREIRLALLEADVNFTVVKDFVKTVREKAVGAEVLKGLNPAQQIVKIVNDELTKLM 87

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAI 155
              + P N   +H P VI++VG+ G GKTT  GKL+ ++ +    + M  A D +R AAI
Sbjct: 88  GEEAVPLNK-AAHIPTVIMMVGLQGAGKTTTAGKLALRLKNEDHARPMFIAADVYRPAAI 146

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            QL+  AD+            D   +  E  + A+    D +IIDTAGRL  +  LM  +
Sbjct: 147 TQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVAKQNHNDYVIIDTAGRLQIDEQLMDEL 206

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +  ++       P  +L V+D+ TGQNA+   + F      TG+I+TK+DG  RGG  
Sbjct: 207 ANIKELVN------PDEILLVIDSMTGQNAVNTAQGFDDKLDITGVILTKLDGDTRGGAA 260

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G GE + DL+ F     ++ I G  D
Sbjct: 261 MSIRAVTGKPIKFVGEGEKMADLDVFHPDRMASRILGMGD 300


>gi|227543207|ref|ZP_03973256.1| signal recognition particle protein [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181016|gb|EEI61988.1| signal recognition particle protein [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 538

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 146/282 (51%), Gaps = 26/282 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  ++ +  +   +DVS      Q+V+  V+E + ++L   ++      
Sbjct: 30  LLEADVSLPVVRGFIKRIKERAGGQDVSQALNPAQQVVKIVNEELIEILGGETRHLQM-A 88

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
            + P VI++ G+ G GKTT+ GKL+K ++  G   ML A D  R  A+ QL+I  +R   
Sbjct: 89  KNSPTVIMLAGLQGAGKTTLAGKLAKHLASQGHTPMLVACDLQRPGAVQQLQIVGERAGV 148

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   T+ D    E+G+   D   +A +  ++A+ ++ DV+I+DTAGRL  +  LM 
Sbjct: 149 PTFAPDPGTTLDTTEHEMGTSHGDPVLVAKQGIEEAKRQQRDVVIVDTAGRLGIDEELMR 208

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
                IR     D   P  VL V+DA  GQ+A++  + F    G TG+++TK+DG ARGG
Sbjct: 209 QASN-IR-----DAVNPDEVLFVIDAMIGQDAVQTAQAFRDGVGFTGVVLTKLDGDARGG 262

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F   GE ++D + F  +  ++ I G  D
Sbjct: 263 AALSIREVTGKPIMFASTGEKLDDFDVFHPERMASRILGMGD 304


>gi|297202642|ref|ZP_06920039.1| signal recognition particle protein [Streptomyces sviceus ATCC
           29083]
 gi|197713217|gb|EDY57251.1| signal recognition particle protein [Streptomyces sviceus ATCC
           29083]
          Length = 537

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 143/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++ +  +    +VS      QRVL  V+E +  +L 
Sbjct: 50  DATAREIRIALLEADVALPVVRAFIKNVKERALGPEVSGSQYPAQRVLDIVNEELVTILG 109

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL++ + + G   +L A D  R  A+ Q
Sbjct: 110 GQTRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLARHLKEEGHSPLLVAADLQRPNAVTQ 168

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+AK  D++I+DTAGRL  +  LM  
Sbjct: 169 LSVVAERAGVAVFAPEPGNGVGDPVKVAQDSVQHARAKLHDIVIVDTAGRLGIDQELMQQ 228

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 229 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 282

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GE ++D + F     ++ I   LD G+
Sbjct: 283 ALSIASVTGKPIMFASNGEKLDDFDVFHPDRMASRI---LDMGD 323


>gi|116495084|ref|YP_806818.1| Signal recognition particle GTPase [Lactobacillus casei ATCC 334]
 gi|116105234|gb|ABJ70376.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Lactobacillus casei ATCC 334]
          Length = 478

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 153/316 (48%), Gaps = 22/316 (6%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E LS   +L K F+    K K   +DI  + R       E+   L+ +D+   V + 
Sbjct: 1   MAFEGLS--ERLQKAFSGLRRKGKVSESDIRDAMR-------EIRLALLEADVNFDVVKT 51

Query: 66  IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++ + TK    +V       Q+++  V++ + K +   + P N    H P VI++ G+ 
Sbjct: 52  FIKNVRTKALGAEVLESLTPSQQIIKIVNDELVKTMGEAAVPLNK-APHIPTVIMMAGLQ 110

Query: 121 GVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT +GKLSK  M +   + +L A D +R AAIDQL+    + +          D  
Sbjct: 111 GAGKTTTVGKLSKYLMDNDSARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDVDPV 170

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +  +    A+  K D ++IDTAGRL  +  LM  + K I+ L       P+ +L V DA
Sbjct: 171 EIVRQGLATAKENKNDYVLIDTAGRLQIDEKLMNEL-KNIKELAH-----PNDILLVDDA 224

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ A+   + F+     TG+++TK+DG  RGG  + I      P+ F+G GE ++ L+
Sbjct: 225 MTGQAAVDVAKGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALD 284

Query: 300 PFVAKDFSAVITGCLD 315
            F     +  I G  D
Sbjct: 285 VFYPDRMANRILGMGD 300


>gi|83941584|ref|ZP_00954046.1| signal recognition particle protein [Sulfitobacter sp. EE-36]
 gi|83847404|gb|EAP85279.1| signal recognition particle protein [Sulfitobacter sp. EE-36]
          Length = 502

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+ +  K   + V+      Q+V+  V + +   L    +P     
Sbjct: 38  LLEADVSLPVARDFVKAVQDKATGQAVTKSITPGQQVVKIVHDALIDTLKGEGEPGALKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P  IL+VG+ G GKTT   KL+K++ D  G +V++A+ D  R AA++QL I   +  
Sbjct: 98  DSPPAPILMVGLQGSGKTTTTAKLAKRLKDRDGKRVLMASLDVNRPAAMEQLAILGVQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G +   +A  A  QA     DV ++DTAGRL  +  LM  + + +R     D
Sbjct: 158 VDTLPIVKGENPVQIAKRAKTQASMGGYDVYMLDTAGRLSIDEELMRQV-EAVR-----D 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ+A++  E F+   G +G+++T+MDG  RGG  + +      P+
Sbjct: 212 VANPRETLLVVDGLTGQDAVQTAENFNDRIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F  +  +  I G  D
Sbjct: 272 KFVGLGEKMDALETFEPERIAGRILGMGD 300


>gi|322831429|ref|YP_004211456.1| signal recognition particle protein [Rahnella sp. Y9602]
 gi|321166630|gb|ADW72329.1| signal recognition particle protein [Rahnella sp. Y9602]
          Length = 453

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 155/309 (50%), Gaps = 25/309 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL ++ ++E L ++   L+ +D+ + V +  +  +  K  A
Sbjct: 2   FENLSDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFISRV--KESA 59

Query: 77  KDVSVQRVLYDVSE---LIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGK 130
               V + L    E   ++ K L       N + +     P V+L+ G+ G GKTT +GK
Sbjct: 60  VGHEVNKSLTPGQEFVKIVQKELETAMGEANTELNLAAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K + +   K +L  + D +R AAI QL+  A +   DF  S+       +   A +QA
Sbjct: 120 LAKFLKEKKKKKVLVVSADVYRPAAIKQLETLAQQVEVDFFPSDAQEKPVDIVSRALQQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNAL 246
           + K  DVLI+DTAGRLH +  +M  I ++         HA   P   L V+DA TGQ+A 
Sbjct: 180 KLKFYDVLIVDTAGRLHVDEAMMDEIKQV---------HAAINPVETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     TG+I+TK+DG ARGG  + I      P+ FLG+GE  + LEPF     
Sbjct: 231 NTAKAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGMGEKTDALEPFHPDRI 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|209153928|gb|ACI33196.1| Signal recognition particle 54 kDa protein [Salmo salar]
          Length = 504

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KNNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVVIAAEGVEKFKNESFEIIIVDTSGRHKQEDSLFE---EMLQVSNAVQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVEVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+DLEPF  + F + + G  D
Sbjct: 274 GTGEHIDDLEPFKTQPFISKLLGMGD 299


>gi|170579858|ref|XP_001895013.1| signal recognition particle 54 kDa protein (SRP54) [Brugia malayi]
 gi|158598201|gb|EDP36148.1| signal recognition particle 54 kDa protein (SRP54), putative
           [Brugia malayi]
          Length = 501

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 118/235 (50%), Gaps = 10/235 (4%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           +QR ++  +EL+ K++ P  KPF      +P++ + VG+ G GKTT   KL+      G 
Sbjct: 75  IQRCVF--TELM-KLVDPGVKPFQPT-KGKPNIFMFVGLQGSGKTTTCTKLAYYYQKKGW 130

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K  L   DTFR+ A DQLK  A +    F  S    D   +A     + +    +++I+D
Sbjct: 131 KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVTIAANGVDKFKDDGFEIIIVD 190

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           T+GR    + L     +M++V   ++P    +++ V+DA+ GQ    Q   F        
Sbjct: 191 TSGRHKQEASLFE---EMLQVSNAVNPS---NIVFVMDASIGQACEAQARAFSETVDVGS 244

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+D  A+GGG +  V     PV F+G GE I+D EPF  K F   + G  D
Sbjct: 245 VIITKLDSHAKGGGALSAVAATHSPVIFIGTGEHIDDFEPFEVKPFVQKLLGMGD 299


>gi|167032079|ref|YP_001667310.1| signal recognition particle protein [Pseudomonas putida GB-1]
 gi|166858567|gb|ABY96974.1| signal recognition particle protein [Pseudomonas putida GB-1]
          Length = 458

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 156/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D +     P V+L+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLALNAAPPAVVLMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I     A+A  A ++A
Sbjct: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH ++ +M  I  +   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFIDVVIVDTAGRLHIDADMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|28895953|ref|NP_802303.1| signal recognition particle [Streptococcus pyogenes SSI-1]
 gi|28811203|dbj|BAC64136.1| putative signal recognition particle [Streptococcus pyogenes SSI-1]
          Length = 522

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 161/312 (51%), Gaps = 23/312 (7%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72
           +T  F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  
Sbjct: 1   MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +    ++       Q++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT
Sbjct: 61  RAIGHEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGTGKTT 118

Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183
             GKL+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  
Sbjct: 119 FAGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVR 176

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  +QA+  + D ++IDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ
Sbjct: 177 KGLEQARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQ 230

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            A      F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F  
Sbjct: 231 EAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHP 290

Query: 304 KDFSAVITGCLD 315
              S+ I G  D
Sbjct: 291 DRMSSRILGMGD 302


>gi|297849956|ref|XP_002892859.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338701|gb|EFH69118.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 444

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 6/204 (2%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V++ VG+ G GKTT   K +      G K  L   DTFR+   DQLK  A +    F  S
Sbjct: 66  VVMFVGLQGAGKTTTCTKYAYYHQKKGYKTALVCADTFRAGVFDQLKQNATKAKIPFYGS 125

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              SD   +A E   + + +K D++I+DT+GR    + L         +L+  +   P  
Sbjct: 126 YTESDPVKIAAEGVDRFKKEKCDLIIVDTSGRHKQEASLCE------EILQVAEATEPDL 179

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V+ V+D++ GQ A  Q + F        +I+TKMDG A+GGG +  V   K PV F+G G
Sbjct: 180 VIFVMDSSIGQAAFDQAQAFKQTVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTG 239

Query: 293 EGINDLEPFVAKDFSAVITGCLDY 316
           E +++ E F  K F + + G  D+
Sbjct: 240 EHMDEFEVFDVKPFVSRLLGKGDW 263


>gi|149692833|ref|XP_001491096.1| PREDICTED: signal recognition particle 54kDa isoform 2 [Equus
           caballus]
          Length = 513

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|325126035|gb|ADY85365.1| Signal recognition protein Ffh [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 467

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 160/321 (49%), Gaps = 32/321 (9%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E+LS   +L K   + + K K    DI ++ R       E+   L+ +D+   V + 
Sbjct: 1   MAFENLS--ERLQKALRNLTGKGKISEEDINAASR-------EIRLALLEADVNFKVVKD 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILV 116
            ++ +  +   ++V       Q+V+  V+E + KM+    + L+K       H P VI++
Sbjct: 52  FIKTIKKRALGQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-----PHIPTVIMM 106

Query: 117 VGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLK-IWADRTSADFVCSEI 174
           VG+ G GKTT +GKL+ + M +   +  L AGD +R AAIDQLK I AD     +   E 
Sbjct: 107 VGLQGTGKTTTVGKLAYRLMKEEKARPFLIAGDIYRPAAIDQLKQIGADLKVPVYSDPEE 166

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            S  A +  +   +A   + D +IIDTAGRL  +  LM  + ++  V        P ++L
Sbjct: 167 KS-VAKIVEDGLAEAAVHRNDYVIIDTAGRLEIDEPLMKELEEVKAV------SQPDNIL 219

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA TGQ A    + F+     TG+I+TK+DG  RGG  + I      P+ F G GE 
Sbjct: 220 LVVDAMTGQVAADVAKTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEK 279

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           + DLE F     ++ I G  D
Sbjct: 280 LTDLEVFHPDRMASRILGMGD 300


>gi|281342878|gb|EFB18462.1| hypothetical protein PANDA_011888 [Ailuropoda melanoleuca]
          Length = 488

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 84  KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 143

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 144 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 199

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 200 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 257

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 258 GTGEHIDDFEPFKTQPFISKLLGMGD 283


>gi|15966993|ref|NP_387346.1| signal recognition particle protein [Sinorhizobium meliloti 1021]
 gi|307302461|ref|ZP_07582218.1| signal recognition particle protein [Sinorhizobium meliloti BL225C]
 gi|307316209|ref|ZP_07595653.1| signal recognition particle protein [Sinorhizobium meliloti AK83]
 gi|15076266|emb|CAC47819.1| Probable signal recognition particle protein (fifty-four homolog)
           [Sinorhizobium meliloti 1021]
 gi|306898049|gb|EFN28791.1| signal recognition particle protein [Sinorhizobium meliloti AK83]
 gi|306903131|gb|EFN33721.1| signal recognition particle protein [Sinorhizobium meliloti BL225C]
          Length = 513

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 143/273 (52%), Gaps = 11/273 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRY-AKDVSVQRVLYDVSELIHKMLMPL--SKPFN 104
           E+   L+ +D+ + V +   E++  K   A+ V   +    V +++H  L+ +  S+   
Sbjct: 33  EVRRALLEADVALDVVRSFTEKVREKAVGAEIVKSIKPGQMVVKIVHDELIAMLGSEGVT 92

Query: 105 WDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWA 162
            D  +  P VI++VG+ G GKTT  GK++K+++    K V++A+ DT R AA +QL+   
Sbjct: 93  IDLNAAAPVVIMMVGLQGSGKTTTTGKIAKRLTARDKKKVLMASLDTRRPAAQEQLRQLG 152

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +T  D +    G     +A  A + A+    D++I+DTAGR H +  LM  + ++ R  
Sbjct: 153 VQTGVDTLPVIAGQSPTDIAARAVQAAKLGGHDIVILDTAGRTHIDEPLMIEMAEIKR-- 210

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                  PH +L V DA TGQ+A+     F    G TGL++T+MDG  RGG  + +    
Sbjct: 211 ----KSNPHEILLVADALTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVT 266

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+  +GVGE +++LE F  +  +  I G  D
Sbjct: 267 GKPIKLIGVGEKMDELEEFHPRRVADRILGMGD 299


>gi|189467237|ref|ZP_03016022.1| hypothetical protein BACINT_03622 [Bacteroides intestinalis DSM
           17393]
 gi|189435501|gb|EDV04486.1| hypothetical protein BACINT_03622 [Bacteroides intestinalis DSM
           17393]
          Length = 439

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 144/279 (51%), Gaps = 13/279 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKTFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
              +    D   +P VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AA++
Sbjct: 86  MGGETAEIDLEGKPAVILMSGLQGSGKTTFSGKLARMLKTKKNKKPLLVACDVYRPAAVE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++ A++            +   +A  A ++A+AK  DV+I+DTAGRL  +  +M  I 
Sbjct: 146 QLRVLAEQIGVPMYSEPDSKNPVKIAENAIQEAKAKGYDVVIVDTAGRLAVDEEMMNEIA 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            + + +       P+ +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 206 AIKKAIN------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I      P+ F+G GE ++ ++ F     S  I G  D
Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQFHPSRMSDRILGMGD 298


>gi|226371618|ref|NP_001139754.1| signal recognition particle 54 kDa protein isoform 2 [Homo sapiens]
 gi|114652598|ref|XP_001135361.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
 gi|332229143|ref|XP_003263751.1| PREDICTED: signal recognition particle 54 kDa protein isoform 2
           [Nomascus leucogenys]
 gi|194374727|dbj|BAG62478.1| unnamed protein product [Homo sapiens]
          Length = 455

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 51  KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 110

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 111 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 166

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 167 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 224

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 225 GTGEHIDDFEPFKTQPFISKLLGMGD 250


>gi|67540914|ref|XP_664231.1| hypothetical protein AN6627.2 [Aspergillus nidulans FGSC A4]
 gi|40738966|gb|EAA58156.1| hypothetical protein AN6627.2 [Aspergillus nidulans FGSC A4]
 gi|259480207|tpe|CBF71127.1| TPA: signal sequence receptor alpha subunit, putative
           (AFU_orthologue; AFUA_6G03850) [Aspergillus nidulans
           FGSC A4]
          Length = 636

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 139/282 (49%), Gaps = 39/282 (13%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +ED L++ ++    A ++ E    EL+ K+     SV   L    E  + K+L P S   
Sbjct: 348 MEDHLLKKNVAREAAVRLCEGVKQELVGKKTGNFQSVDAALKSAMESSLRKILTPTSSLD 407

Query: 102 ---------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                      N   + RP+VI +VGVNGVGK+T +GK+   +     ++++AA DTFRS
Sbjct: 408 LLHEIDTVTKANKQGTSRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRILIAACDTFRS 467

Query: 153 AAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            A++QL++ A R   +    E            G DAA +A +A +   A   DV++IDT
Sbjct: 468 GAVEQLRVHA-RNLKELSARENVGAVELYEKGYGKDAANVAKDAVEYGAANNFDVVLIDT 526

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT--- 258
           AGR HN+  LM+ + K  +  +      P+ +  V +A  G +++ Q   F+   GT   
Sbjct: 527 AGRRHNDQRLMSSLEKFAKFAQ------PNKIFMVGEALVGTDSVMQARNFNQAFGTGRN 580

Query: 259 -TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
             G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 581 LDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 622


>gi|170723319|ref|YP_001751007.1| signal recognition particle protein [Pseudomonas putida W619]
 gi|169761322|gb|ACA74638.1| signal recognition particle protein [Pseudomonas putida W619]
          Length = 458

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 156/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D +     P V+L+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLALNAAPPAVVLMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I     A+A  A ++A
Sbjct: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH ++ +M  I  +   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFIDVVIVDTAGRLHIDADMMDEIKALHAAVK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|71903552|ref|YP_280355.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS6180]
 gi|71802647|gb|AAX72000.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS6180]
          Length = 522

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 161/312 (51%), Gaps = 23/312 (7%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72
           +T  F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  
Sbjct: 1   MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +    ++       Q++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT
Sbjct: 61  RAIGHEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTT 118

Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183
             GKL+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  
Sbjct: 119 FAGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVR 176

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  +QA+  + D ++IDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ
Sbjct: 177 KGLEQARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQ 230

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            A      F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F  
Sbjct: 231 EAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHP 290

Query: 304 KDFSAVITGCLD 315
              S+ I G  D
Sbjct: 291 DRMSSRILGMGD 302


>gi|15639566|ref|NP_219016.1| cell division protein (ftsY) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025805|ref|YP_001933577.1| cell division protein [Treponema pallidum subsp. pallidum SS14]
 gi|3322872|gb|AAC65553.1| cell division protein (ftsY) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018380|gb|ACD70998.1| cell division protein [Treponema pallidum subsp. pallidum SS14]
          Length = 295

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 145/272 (53%), Gaps = 13/272 (4%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ---RVLY-DVSELIHKML 96
           LD+     LE+LLI  D+ ++ A+    +L      + V  +   R L+ ++ E   ++ 
Sbjct: 22  LDETFFSALEELLIEGDLSLSTAESFCTQLRNAARTRSVHTEDALRTLFAEIMESCVRVT 81

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAI 155
                P      ++  + L++GVNG GKTT   KL+       +  ++ AA DTFR+AA 
Sbjct: 82  HLAPNP------NQCSLYLLLGVNGSGKTTSAAKLAAYYQTQKVHPILFAAADTFRAAAA 135

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL     +     +    G D AA+ ++A +  +A+K  +L++DTAGRLHN + L+A +
Sbjct: 136 EQLAHHGAQLGVRVIAHPGGKDPAAVVFDAGEALRAQKRGLLLVDTAGRLHNKTHLIAEL 195

Query: 216 GKMIRVLK-RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
            K+ R+ + ++   A   +L VLDATTGQNA RQ + FH   G   L++ K D  ARGG 
Sbjct: 196 QKIDRIAQTKVSADAYRKIL-VLDATTGQNAFRQAQTFHEAIGVDALLLAKCDTRARGGA 254

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +  I+    IP+ FLG GE   DL    A++F
Sbjct: 255 VFSIMQELGIPLAFLGWGERYTDLVEANAREF 286


>gi|4507215|ref|NP_003127.1| signal recognition particle 54 kDa protein isoform 1 [Homo sapiens]
 gi|50979080|ref|NP_001003272.1| signal recognition particle 54 kDa protein [Canis lupus familiaris]
 gi|84000369|ref|NP_001033290.1| signal recognition particle 54 kDa protein [Bos taurus]
 gi|197103004|ref|NP_001126912.1| signal recognition particle 54 kDa protein [Pongo abelii]
 gi|55640599|ref|XP_509903.1| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes]
 gi|109083294|ref|XP_001082531.1| PREDICTED: signal recognition particle 54 kDa protein isoform 1
           [Macaca mulatta]
 gi|114652587|ref|XP_001135626.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
 gi|114652590|ref|XP_001135796.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
 gi|114652592|ref|XP_001136048.1| PREDICTED: signal recognition particle 54 kDa protein isoform 5
           [Pan troglodytes]
 gi|149410337|ref|XP_001511597.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
 gi|149692831|ref|XP_001491075.1| PREDICTED: signal recognition particle 54kDa isoform 1 [Equus
           caballus]
 gi|296214799|ref|XP_002753859.1| PREDICTED: signal recognition particle 54 kDa protein isoform 1
           [Callithrix jacchus]
 gi|301774887|ref|XP_002922872.1| PREDICTED: signal recognition particle 54 kDa protein-like
           [Ailuropoda melanoleuca]
 gi|332229141|ref|XP_003263750.1| PREDICTED: signal recognition particle 54 kDa protein isoform 1
           [Nomascus leucogenys]
 gi|46577649|sp|P61010|SRP54_CANFA RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|46577650|sp|P61011|SRP54_HUMAN RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|68731680|sp|Q5R4R6|SRP54_PONAB RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|73621949|sp|Q4R965|SRP54_MACFA RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|122142857|sp|Q2T9U1|SRP54_BOVIN RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|119390387|pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
 gi|930|emb|CAA34385.1| unnamed protein product [Canis lupus familiaris]
 gi|784999|emb|CAA60132.1| SRP 54 [Homo sapiens]
 gi|1256820|gb|AAC50994.1| signal recognition particle [Homo sapiens]
 gi|12653733|gb|AAH00652.1| Signal recognition particle 54kDa [Homo sapiens]
 gi|13097267|gb|AAH03389.1| Signal recognition particle 54kDa [Homo sapiens]
 gi|55733132|emb|CAH93250.1| hypothetical protein [Pongo abelii]
 gi|67967747|dbj|BAE00356.1| unnamed protein product [Macaca fascicularis]
 gi|83405301|gb|AAI11271.1| Signal recognition particle 54kDa [Bos taurus]
 gi|90076082|dbj|BAE87721.1| unnamed protein product [Macaca fascicularis]
 gi|90076300|dbj|BAE87830.1| unnamed protein product [Macaca fascicularis]
 gi|177771971|gb|ACB73260.1| signal recognition particle (predicted) [Rhinolophus ferrumequinum]
 gi|189053540|dbj|BAG35706.1| unnamed protein product [Homo sapiens]
 gi|296475353|gb|DAA17468.1| signal recognition particle 54 kDa protein [Bos taurus]
 gi|325464281|gb|ADZ15911.1| signal recognition particle 54kDa [synthetic construct]
 gi|226429|prf||1512310A SRP protein 54kD
          Length = 504

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|224059270|ref|XP_002299799.1| predicted protein [Populus trichocarpa]
 gi|222847057|gb|EEE84604.1| predicted protein [Populus trichocarpa]
          Length = 493

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 19/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86
           II  + L+D + E +   L++SD+   +        +KIV  + L   + K   +Q+ ++
Sbjct: 22  IIDEKALNDCLNE-ITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           +  EL  K+L P    F      +  V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  N--ELC-KILDPGKSSFTPK-KGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ A DQLK  A +    F  S   SD   +A E  +  + +  D++I+DT+GR  
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAEEGVETFKKENCDLIIVDTSGRHK 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
             + L   + ++    K      P  ++ V+D++ GQ A  Q + F  +     +I+TKM
Sbjct: 197 QEAALFEEMRQVSEATK------PDLIIFVMDSSIGQAAFDQAQAFKQMVAVGAVIITKM 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           DG A+GGG +  V   K PV F+G GE +++ E F  K F + + G  D+
Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300


>gi|296214803|ref|XP_002753861.1| PREDICTED: signal recognition particle 54 kDa protein isoform 3
           [Callithrix jacchus]
          Length = 455

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 51  KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 110

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 111 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 166

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 167 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 224

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 225 GTGEHIDDFEPFKTQPFISKLLGMGD 250


>gi|237723193|ref|ZP_04553674.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293372708|ref|ZP_06619090.1| signal recognition particle protein [Bacteroides ovatus SD CMC 3f]
 gi|229447715|gb|EEO53506.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292632517|gb|EFF51113.1| signal recognition particle protein [Bacteroides ovatus SD CMC 3f]
          Length = 440

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 108/193 (55%), Gaps = 7/193 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           RP VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AAI+QL++ A++    
Sbjct: 98  RPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVP 157

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
             C     +   +A  A ++A+AK  D++I+DTAGRL  +  +M  I  + + +      
Sbjct: 158 MYCELDSKNPVEIAQHAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIAAIKKAIN----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I      P+ F
Sbjct: 213 -PDEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKF 271

Query: 289 LGVGEGINDLEPF 301
           +G GE +  ++ F
Sbjct: 272 VGTGEKLEAIDQF 284


>gi|94990538|ref|YP_598638.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS10270]
 gi|94544046|gb|ABF34094.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS10270]
          Length = 522

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 161/312 (51%), Gaps = 23/312 (7%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72
           +T  F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  
Sbjct: 1   MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +    ++       Q++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT
Sbjct: 61  RAIGHEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTT 118

Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183
             GKL+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  
Sbjct: 119 FAGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVR 176

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  +QA+  + D ++IDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ
Sbjct: 177 KGLEQARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQ 230

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            A      F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F  
Sbjct: 231 EAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHP 290

Query: 304 KDFSAVITGCLD 315
              S+ I G  D
Sbjct: 291 DRMSSRILGMGD 302


>gi|121703808|ref|XP_001270168.1| signal sequence receptor alpha subunit, putative [Aspergillus
           clavatus NRRL 1]
 gi|119398312|gb|EAW08742.1| signal sequence receptor alpha subunit, putative [Aspergillus
           clavatus NRRL 1]
          Length = 654

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 139/282 (49%), Gaps = 38/282 (13%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +ED L++ ++    A ++ E    EL+ K+     SV   L    E  + K+L P S   
Sbjct: 365 MEDHLLKKNVAREAAVRLCEGVQRELVGKKTGNFQSVDAALRSAMESSLRKILTPTSSLD 424

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P +   + RP+VI +VGVNGVGK+T + K+   +     +V++AA DTFR
Sbjct: 425 LLREIETVRSPSSKGQAPRPYVISIVGVNGVGKSTNLSKICYFLLQNNYRVLIAACDTFR 484

Query: 152 SAAIDQLKIWA---DRTSADFVCSEI-------GSDAAALAYEAFKQAQAKKVDVLIIDT 201
           S A++QL++ A      SA     E+       G DAA +A +A +   A   DV++IDT
Sbjct: 485 SGAVEQLRVHARNLKELSARETAGEVELYEKGYGKDAANVAKDAVEYGAANDFDVVLIDT 544

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT--- 258
           AGR HN+  LM+ + K  +  K      P  +  V +A  G +++ Q   F+   GT   
Sbjct: 545 AGRRHNDQRLMSSLEKFAKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRN 598

Query: 259 -TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
             G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 599 LDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 640


>gi|81428329|ref|YP_395329.1| Signal recognition particle protein Ffh [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78609971|emb|CAI55018.1| Signal recognition particle protein Ffh [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 478

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 136/271 (50%), Gaps = 17/271 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  ++ +  K    +V       Q+++  V E + KM+   + P N   
Sbjct: 39  LLEADVNFKVVKDFIKVVKEKAIGTEVLESLSPAQQIVKIVDEELTKMMGETAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P +I++VG+ G GKTT  GKL+  +  +   + ++ A D +R AAIDQLK   ++  
Sbjct: 98  PKIPTIIMMVGLQGAGKTTTAGKLATYLIKNEKARPLMIAADIYRPAAIDQLKTVGEQVG 157

Query: 167 ADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
           A     E+G+D     +  +   QA  +K D ++IDTAGRL  +  LM  +   I  L R
Sbjct: 158 APVF--EMGTDVNPVEIVRQGLAQAALQKNDYVLIDTAGRLQIDEALMQELAD-INDLAR 214

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P+  L  +DA TGQ A+   E F++    TG+++TK+DG  RGG  + I      
Sbjct: 215 -----PNETLLTVDAMTGQAAVDVAEGFNSRLDITGVVLTKLDGDTRGGAALSIRAVTGK 269

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F G GE +N L+ F     S+ I G  D
Sbjct: 270 PIKFTGQGEKLNQLDVFYPDRMSSRILGMGD 300


>gi|325685920|gb|EGD27985.1| signal recognition particle protein Ffh [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 476

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 161/321 (50%), Gaps = 32/321 (9%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E+LS   +L K   + + K K    DI ++ R       E+   L+ +D+   V + 
Sbjct: 1   MAFENLS--ERLQKALRNLTGKGKISEEDINAASR-------EIRLALLEADVNFKVVKD 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILV 116
            ++ +  +   ++V       Q+V+  V+E + KM+    + L+K       H P VI++
Sbjct: 52  FIKTIKKRALGQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-----PHIPTVIMM 106

Query: 117 VGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQL-KIWADRTSADFVCSEI 174
           VG+ G GKTT +GKL+ + M +   +  L AGD +R AAIDQL +I AD     +   E 
Sbjct: 107 VGLQGTGKTTTVGKLAYRLMKEEKARPFLIAGDIYRPAAIDQLEQIGADLKVPVYSDPEE 166

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            S  A +  +   +A   + D +IIDTAGRL  +  LM  + ++  V +      P ++L
Sbjct: 167 KS-VAKIVEDGLAEAAVHRNDYVIIDTAGRLEIDEPLMKELEEVKAVAQ------PDNIL 219

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA TGQ A    + F+     TG+I+TK+DG  RGG  + I      P+ F G GE 
Sbjct: 220 LVVDAMTGQAAADVAKTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEK 279

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           + DLE F     ++ I G  D
Sbjct: 280 LTDLEVFHPDRMASRILGMGD 300


>gi|307704985|ref|ZP_07641872.1| signal recognition particle protein [Streptococcus mitis SK597]
 gi|307621436|gb|EFO00486.1| signal recognition particle protein [Streptococcus mitis SK597]
          Length = 523

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQA   D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|212550936|ref|YP_002309253.1| signal recognition particle protein [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549174|dbj|BAG83842.1| signal recognition particle protein [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 439

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 152/298 (51%), Gaps = 18/298 (6%)

Query: 25  SLKLKEG---ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           SLKL +G   IT+I  +  L D +R+ L D  +   I  +    + E+ L +     +  
Sbjct: 12  SLKLLKGEGKITEINVAETLKD-IRKSLLDADVNYKIAKSFTNTVKEKALGQNVLGSIKP 70

Query: 82  QRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             ++    +++H  L  L  S     + S++  +IL+ G+ G GKTT   KL+K + D  
Sbjct: 71  GELMV---KIVHDELSNLMGSNASELNLSNKLSIILISGLQGSGKTTFCSKLAKMLKDKK 127

Query: 140 LK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA-ALAYEAFKQAQAKKVDVL 197
            K  +L A D +R AAIDQLKI   +     V SE+ + ++  +A  A KQA+  K DV+
Sbjct: 128 NKNPLLVADDIYRPAAIDQLKILGKQIDVT-VYSELNNKSSIQIAQSAIKQAKQDKNDVV 186

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           IIDTAGRL  +  +M  I  + + +       P  +L V+D+ TGQ+A+   + F+    
Sbjct: 187 IIDTAGRLAVDQRMMEEIASIKKAIN------PDEILFVVDSMTGQDAVNTAKEFNNRLD 240

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +G+++TK+DG  RGG  + I      P+ F+  GE +  ++ F  K  +  I G  D
Sbjct: 241 FSGIVLTKLDGDTRGGAALSIRAVVNKPIKFVSRGEKMESIDIFHPKRMADRILGMGD 298


>gi|311260885|ref|XP_001927834.2| PREDICTED: signal recognition particle 54 kDa protein isoform 1
           [Sus scrofa]
          Length = 506

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|303324207|ref|XP_003072091.1| signal recognition particle protein, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240111801|gb|EER29946.1| signal recognition particle protein, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320037086|gb|EFW19024.1| signal sequence receptor alpha subunit [Coccidioides posadasii str.
           Silveira]
          Length = 647

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +ED L++ ++    A ++ E    EL+ K+     S+   L    E  + K+L P S   
Sbjct: 358 MEDHLLKKNVAREAALRLCEGVEHELVGKKTGSFQSIDSALRSAMESSLRKILTPTSSLD 417

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P N   + RP+VI +VGVNGVGK+T + K+   +     KV++AA DTFR
Sbjct: 418 LLREIDAVTSPRNNQQARRPYVISIVGVNGVGKSTNLSKICFFLLQNNYKVLIAACDTFR 477

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A   A +   DV++ID
Sbjct: 478 SGAVEQLRVHA-RNLKELSEREQVGQIELYEKGYGKDAANVAKDAVAYAASNDFDVVLID 536

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +        AP  +  V +A  G +++ Q   F+   GT  
Sbjct: 537 TAGRRHNDQRLMSSLEKFAKFA------APDKIFMVGEALVGTDSVMQARNFNQAFGTGR 590

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 591 SLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 633


>gi|114705073|ref|ZP_01437981.1| signal recognition particle protein [Fulvimarina pelagi HTCC2506]
 gi|114539858|gb|EAU42978.1| signal recognition particle protein [Fulvimarina pelagi HTCC2506]
          Length = 527

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 144/278 (51%), Gaps = 21/278 (7%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIHKMLMPL 99
           E+   L+ +D+ + V ++  E +  K    +V         V ++++D  ELI  +    
Sbjct: 33  EVRRALLEADVALEVVREFTERVRAKAVGAEVLKSIKPGQMVVKIVHD--ELIETLG--- 87

Query: 100 SKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQ 157
           S+  + D  +  P  +++VG+ G GKTT  GK++K++ D   K V++A+ DT R AA +Q
Sbjct: 88  SEGVSIDLNAPAPVTLMMVGLQGSGKTTTTGKIAKRLKDKQRKKVLMASLDTRRPAAQEQ 147

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LK+  ++T  D +    G     +A  A + A+    DV+I+DTAGR H +  LM  +  
Sbjct: 148 LKVLGEQTQVDTLPIIAGQGPVEIAVRAEQAARLGGYDVVILDTAGRTHIDEPLMVEMAN 207

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            I+V  +     PH +L V D+ TGQ+A+     F    G TG+++T++DG  RGG  + 
Sbjct: 208 -IKVRTK-----PHEILLVADSLTGQDAVNLARSFDERVGVTGIVLTRVDGDGRGGAALS 261

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +      P+  +GVGE ++ LE F     +  I G  D
Sbjct: 262 MRAVTGKPIKLIGVGEKMDALEDFHPSRIADRILGMGD 299


>gi|94994460|ref|YP_602558.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS10750]
 gi|94547968|gb|ABF38014.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS10750]
          Length = 522

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 161/312 (51%), Gaps = 23/312 (7%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72
           +T  F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  
Sbjct: 1   MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +    ++       Q++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT
Sbjct: 61  RAIGHEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTT 118

Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183
             GKL+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  
Sbjct: 119 FAGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVR 176

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  +QA+  + D ++IDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ
Sbjct: 177 KGLEQARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQ 230

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            A      F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F  
Sbjct: 231 EAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHP 290

Query: 304 KDFSAVITGCLD 315
              S+ I G  D
Sbjct: 291 DRMSSRILGMGD 302


>gi|42523591|ref|NP_968971.1| signal recognition particle protein [Bdellovibrio bacteriovorus
           HD100]
 gi|39575797|emb|CAE79964.1| signal recognition particle protein [Bdellovibrio bacteriovorus
           HD100]
          Length = 450

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 131/258 (50%), Gaps = 20/258 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL--SKPFN 104
           L+ +D+   V +  ++++  K   +DV     L +V+      +++H  L+ +      +
Sbjct: 45  LLEADVNFKVVKTFIDKVKEKALGQDV-----LTNVNPGQMFVKIVHDELVNVLGGGAVD 99

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD 163
            +    P VI +VG+ G GKTT   KLS  +      K  L   D +R AAIDQL++   
Sbjct: 100 INVRENPSVIFLVGLQGAGKTTSAAKLSLYIRQKLNKKPGLVPADIYRPAAIDQLQVLGK 159

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           + +     +++G     +  +A + A+   V+V+I+DTAGRL  +  LM  +G++  +  
Sbjct: 160 QNNIPTFPTQVGMKPEEILEKAKQWARDNMVEVVIVDTAGRLQIDEDLMGELGRLKEIW- 218

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P  +L V DA  GQ ++   E FH     TGL++TK+DG ARGG  + I     
Sbjct: 219 -----TPQEILLVADAMLGQQSVNVAEGFHKRLNLTGLVLTKVDGDARGGAALSIREVTG 273

Query: 284 IPVYFLGVGEGINDLEPF 301
           IP+ FLG+GE +  LE F
Sbjct: 274 IPIKFLGIGEKVTALEVF 291


>gi|124486290|ref|YP_001030906.1| signal recognition particle protein Srp54 [Methanocorpusculum
           labreanum Z]
 gi|166222334|sp|A2STI3|SRP54_METLZ RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|124363831|gb|ABN07639.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanocorpusculum labreanum Z]
          Length = 446

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 143/290 (49%), Gaps = 27/290 (9%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLY 86
           +I    +D+ VR+ L+  L+ SD+ V +  ++ +++  +   +D+         V R++Y
Sbjct: 22  VIDRAAVDELVRD-LQRALLSSDVNVKLVMELSKQIKARSLDEDLPKGINAREHVLRIVY 80

Query: 87  -DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
            ++  L+ K           +FS +P  IL+ G+ G GKTT  GKL +     GLKV   
Sbjct: 81  QELVNLVGK---------EAEFSLKPQKILMAGLQGSGKTTTTGKLCRYFQRKGLKVGAI 131

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             D FR  A  QL+    + +          DA  +  +    A  K VDV+I+DTAGR 
Sbjct: 132 GADNFRPGAYAQLETLCKKINVPSYGDPKEKDAVKIVKDGL--AALKDVDVIIVDTAGRH 189

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
                L   I ++ +V   L+P   H  L V+DA  GQ A  Q + FH   G  G+I+TK
Sbjct: 190 ALEDDL---IDEITQVNAYLNPD--HRWL-VIDAALGQAARDQAKRFHEAIGIDGVIVTK 243

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           MDGTA+GGG +  V   +  + F+G GE I+DLE F    F + + G  D
Sbjct: 244 MDGTAKGGGAMSAVAETQSGIVFIGNGETIDDLERFDPNGFISRLLGMGD 293


>gi|153791464|ref|NP_001093580.1| signal recognition particle 54C [Mus musculus]
          Length = 504

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAIQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|326469321|gb|EGD93330.1| signal sequence receptor alpha subunit [Trichophyton tonsurans CBS
           112818]
          Length = 650

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLY-DVSELIHKMLMP----- 98
           +ED L++ ++    A ++ E    EL+ K+ A   S+   L   +   + K+L P     
Sbjct: 361 MEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQSIDSALRAGMESSLRKILTPTTSLD 420

Query: 99  -------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                  ++ P N     RP+VI VVGVNGVGK+T + KL   +     KV++AA DTFR
Sbjct: 421 LLREIEVVTSPTNQQQPRRPYVISVVGVNGVGKSTNLSKLCFFLLQNKYKVLIAACDTFR 480

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A   A +   DV++ID
Sbjct: 481 SGAVEQLRVHA-RNLKELSARENAGHVELYEKGYGKDAANVAKDAVAYAASNDFDVVLID 539

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +         P  +L V +A  G +++ Q   F+   G   
Sbjct: 540 TAGRRHNDQRLMSSLEKFAKFAN------PDKILMVGEALVGTDSVMQARNFNQAFGPGR 593

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 594 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 636


>gi|15834914|ref|NP_296673.1| signal recognition particle [Chlamydia muridarum Nigg]
 gi|270285084|ref|ZP_06194478.1| signal recognition particle [Chlamydia muridarum Nigg]
 gi|270289107|ref|ZP_06195409.1| signal recognition particle [Chlamydia muridarum Weiss]
 gi|301336480|ref|ZP_07224682.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia muridarum
           MopnTet14]
 gi|7190336|gb|AAF39161.1| signal recognition particle [Chlamydia muridarum Nigg]
          Length = 448

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 112/208 (53%), Gaps = 9/208 (4%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           RP V+L  G+ G GKTT   KL+  +       KV++A+ D  R +A+DQL+    +T A
Sbjct: 98  RPAVVLFCGLQGAGKTTTCAKLADYVLREKKAKKVLVASCDLKRFSAVDQLEGLIKQTGA 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           DF   + G +  ++A EA + A+ +  D+LI+DTAGRLH +  LM  +  + RV      
Sbjct: 158 DFF-RKKGENPVSMASEAVRYAKDQGYDLLIVDTAGRLHVDDALMDELVAIARVTN---- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V++   GQ+A+   + F    G TG++++  DG AR G ++ +      P+ 
Sbjct: 213 --PSEILFVMNLAMGQDAVTTAKAFDERLGLTGIVVSMADGDARAGAVLSVKSLLGRPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I DL PF A+  +  I G  D
Sbjct: 271 FEGCGEKIKDLRPFNAQSMAERILGMGD 298


>gi|326483433|gb|EGE07443.1| signal recognition particle receptor subunit alpha [Trichophyton
           equinum CBS 127.97]
          Length = 650

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLY-DVSELIHKMLMP----- 98
           +ED L++ ++    A ++ E    EL+ K+ A   S+   L   +   + K+L P     
Sbjct: 361 MEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQSIDSALRAGMESSLRKILTPTTSLD 420

Query: 99  -------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                  ++ P N     RP+VI VVGVNGVGK+T + KL   +     KV++AA DTFR
Sbjct: 421 LLREIEVVTSPTNQQQPRRPYVISVVGVNGVGKSTNLSKLCFFLLQNKYKVLIAACDTFR 480

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A   A +   DV++ID
Sbjct: 481 SGAVEQLRVHA-RNLKELSARENAGHVELYEKGYGKDAANVAKDAVAYAASNDFDVVLID 539

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +         P  +L V +A  G +++ Q   F+   G   
Sbjct: 540 TAGRRHNDQRLMSSLEKFAKFAN------PDKILMVGEALVGTDSVMQARNFNQAFGPGR 593

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 594 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 636


>gi|219682754|ref|YP_002469137.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|219620404|gb|ACL28561.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|289178052|gb|ADC85298.1| signal recognition particle, subunit Ffh/Srp54 [Bifidobacterium
           animalis subsp. lactis BB-12]
          Length = 590

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 36/324 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L D    G   E+   L+ +D+ + V +     +  +  +
Sbjct: 47  FSSLTDRLSNAFKHLKSKGKLSDADIDGTIREIRRALLDADVSLDVVRSFTARVRDRALS 106

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V++ +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 107 TEVSEALNPAQQVVRIVNDELTDILGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 165

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D+G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 166 LGYWLKDSGHTPLLVAADLQRPNAVTQLEVVGERAGVPVYAPEKGVQSAGGDAVSAPGET 225

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A ++ + A+ K  D +IIDTAGRL  +  LM    +  R ++  D   P+ VL
Sbjct: 226 TGDPVKVARDSIEYARQKMYDTVIIDTAGRLGVDETLM----QQARDIR--DAVQPNEVL 279

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA TGQ+A+R  + F      TG++++K+DG  RGG  + +      P+ F   GEG
Sbjct: 280 FVIDAMTGQDAVRTAQAFDEGVNFTGVVLSKLDGDTRGGAALSVASVTGKPILFASNGEG 339

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           + D E F     ++ I   LD G+
Sbjct: 340 LKDFEVFHPDRMASRI---LDMGD 360


>gi|307709396|ref|ZP_07645854.1| signal recognition particle protein [Streptococcus mitis SK564]
 gi|307619979|gb|EFN99097.1| signal recognition particle protein [Streptococcus mitis SK564]
          Length = 523

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQA   D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVDIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|294631640|ref|ZP_06710200.1| signal recognition particle protein [Streptomyces sp. e14]
 gi|292834973|gb|EFF93322.1| signal recognition particle protein [Streptomyces sp. e14]
          Length = 516

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++ +  +    DVS      Q+VL  V+E + ++L 
Sbjct: 28  DATAREIRIALLEADVALPVVRTFIKNVKERALGADVSKALNPAQQVLKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL K + + G   +L A D  R  A++Q
Sbjct: 88  GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGKWLKEQGHSPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + ADR        E G+   D   +A ++ + A+AK  D++I+DTAGRL  +  +M  
Sbjct: 147 LSVVADRAGVAVYAPEPGNGVGDPVKVAKDSIEFAKAKVHDIVIVDTAGRLGIDQEMMRQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I      P+ F   GE ++D + F
Sbjct: 261 ALSIRQITGKPIMFASNGEKLDDFDAF 287


>gi|47214799|emb|CAF89626.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 514

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KNNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E   + +A+  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVVIATEGVDKFKAENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAVQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   + P+ F+
Sbjct: 216 --NIVYVMDASIGQACESQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATRSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|253581989|ref|ZP_04859213.1| IISP Type II signal recognition particle GTPase [Fusobacterium
           varium ATCC 27725]
 gi|251836338|gb|EES64875.1| IISP Type II signal recognition particle GTPase [Fusobacterium
           varium ATCC 27725]
          Length = 446

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 140/282 (49%), Gaps = 15/282 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           +  ++E L+++   L+ +D+   V +    ++L K    DV       Q+ +  V++ + 
Sbjct: 24  ESNIKEALKEVRMSLLEADVNYKVVKDFTNKILEKSVGTDVLKGINPGQQFIKVVNDELV 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           ++L   +        + P V+++ G+ G GKTT   KL+  +   G  V++   D +R A
Sbjct: 84  ELLGGTNSRLTKGVRN-PTVLMLSGLQGAGKTTFAVKLANYLKKQGESVLMVGADVYRPA 142

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           AI QL++  ++ +      E   D  A+      +A+      +IIDTAGRLH +  LM 
Sbjct: 143 AIKQLQVLGEQINVPVYAEEDNKDTVAICEHGLAKAKELNSTYMIIDTAGRLHIDEKLME 202

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            +  + + ++      P  +L V+DA  GQ+A+   E F+ V    G+++TK+DG  RGG
Sbjct: 203 ELRSIKKAVR------PQEILLVVDAMIGQDAVNLAEAFNNVLSIDGIVLTKLDGDTRGG 256

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F+GVGE I+D+E F  +   + I G  D
Sbjct: 257 AALSIKSVVGKPIKFVGVGERIDDIELFHPERLVSRILGMGD 298


>gi|306825356|ref|ZP_07458696.1| signal recognition particle protein [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304432294|gb|EFM35270.1| signal recognition particle protein [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 523

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQA   D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|288553090|ref|YP_003425025.1| signal recognition particle protein [Bacillus pseudofirmus OF4]
 gi|288544250|gb|ADC48133.1| signal recognition particle [Bacillus pseudofirmus OF4]
          Length = 452

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT   KL+  +     +  ML A D +R AAI QL+    + +   
Sbjct: 101 PTVVMMVGLQGAGKTTTTAKLANHLRKKQNRTPMLVAADIYRPAAIKQLETLGKQLNMPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +A +A  +A+    D ++IDTAGRLH +  LM  + ++  + K      
Sbjct: 161 FSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMGELQEVKEIAK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +L V+DA TGQ+A+   E F+     TG+++TK+DG  RGG  I +      P+ F 
Sbjct: 215 PDEILLVVDAMTGQDAVNVAESFNEQLDVTGVVLTKLDGDTRGGAAISVKAVTNTPIKFA 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+GE I+ LEPF     ++ I G  D
Sbjct: 275 GMGEKIDQLEPFYPDRMASRILGMGD 300


>gi|319939112|ref|ZP_08013476.1| signal recognition particle GTPase [Streptococcus anginosus
           1_2_62CV]
 gi|319812162|gb|EFW08428.1| signal recognition particle GTPase [Streptococcus anginosus
           1_2_62CV]
          Length = 516

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  + G + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEEGARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM      +R +K L  
Sbjct: 159 PVFSLGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|296214801|ref|XP_002753860.1| PREDICTED: signal recognition particle 54 kDa protein isoform 2
           [Callithrix jacchus]
 gi|297297688|ref|XP_001083050.2| PREDICTED: signal recognition particle 54 kDa protein isoform 3
           [Macaca mulatta]
 gi|332229145|ref|XP_003263752.1| PREDICTED: signal recognition particle 54 kDa protein isoform 3
           [Nomascus leucogenys]
 gi|332842112|ref|XP_001136118.2| PREDICTED: signal recognition particle 54 kDa protein isoform 6
           [Pan troglodytes]
 gi|194373485|dbj|BAG56838.1| unnamed protein product [Homo sapiens]
          Length = 466

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 62  KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 121

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 122 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 177

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 178 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 235

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 236 GTGEHIDDFEPFKTQPFISKLLGMGD 261


>gi|139473726|ref|YP_001128442.1| signal recognition particle protein [Streptococcus pyogenes str.
           Manfredo]
 gi|134271973|emb|CAM30211.1| signal recognition particle protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 520

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 160/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT +GK
Sbjct: 63  HEIINTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187
           L+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  +  +
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+  + D ++IDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     S
Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|216263608|ref|ZP_03435603.1| signal recognition particle protein [Borrelia afzelii ACA-1]
 gi|215980452|gb|EEC21273.1| signal recognition particle protein [Borrelia afzelii ACA-1]
          Length = 444

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 141/276 (51%), Gaps = 15/276 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103
           E +++ L+ +D+ + V ++ +  ++ +  +K V V R +   S+ I  +   L K     
Sbjct: 32  EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89

Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           N++ S  P      IL++G+ G GKTT   KLS ++     KV+L A DTFR+AA++QLK
Sbjct: 90  NYELSLHPVNKQSYILMLGLQGSGKTTTSAKLSLRLKKENRKVLLVAADTFRAAAVEQLK 149

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I   +        E   D   +   + K A+++  D +I+DT GRL   S+L+  I K+ 
Sbjct: 150 ILGSQIGVPVFSLEGEKDPIKIVKASMKFAESEFFDSVIVDTRGRLEVESLLVEEIKKIK 209

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            +L+      P   + V+D+  GQ A+   + F+   G TG I +K D   RGG ++   
Sbjct: 210 GILQ------PTETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +P+ F+GVGE   DL+ F  +  ++ I G  D
Sbjct: 264 SICAVPIKFVGVGEKPEDLDSFYPERIASRILGMGD 299


>gi|183601839|ref|ZP_02963208.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|241190330|ref|YP_002967724.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241195736|ref|YP_002969291.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218724|gb|EDT89366.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|240248722|gb|ACS45662.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240250290|gb|ACS47229.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|295793317|gb|ADG32852.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 547

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 36/324 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L D    G   E+   L+ +D+ + V +     +  +  +
Sbjct: 4   FSSLTDRLSNAFKHLKSKGKLSDADIDGTIREIRRALLDADVSLDVVRSFTARVRDRALS 63

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V++ +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 64  TEVSEALNPAQQVVRIVNDELTDILGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D+G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLEVVGERAGVPVYAPEKGVQSAGGDAVSAPGET 182

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A ++ + A+ K  D +IIDTAGRL  +  LM    +  R ++  D   P+ VL
Sbjct: 183 TGDPVKVARDSIEYARQKMYDTVIIDTAGRLGVDETLM----QQARDIR--DAVQPNEVL 236

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA TGQ+A+R  + F      TG++++K+DG  RGG  + +      P+ F   GEG
Sbjct: 237 FVIDAMTGQDAVRTAQAFDEGVNFTGVVLSKLDGDTRGGAALSVASVTGKPILFASNGEG 296

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           + D E F     ++ I   LD G+
Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317


>gi|332024403|gb|EGI64601.1| Signal recognition particle 54 kDa protein [Acromyrmex echinatior]
          Length = 506

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 106/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP++I+ VG+ G GKTT   KL+        K  L   DTFR+ A DQ+K  A +    F
Sbjct: 100 RPNIIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A +     + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEVDPVTIAQDGVDMFKKEGYEIIIVDTSGRHKQEESLFE---EMLQVANAVQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DAT GQ    Q + F        +I+TK+DG A+GGG +  V   + PV F+
Sbjct: 216 --NIIFVMDATIGQACEAQAKAFKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFV 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+DLEPF  K F + + G  D
Sbjct: 274 GTGEHIDDLEPFKTKPFISKLLGMGD 299


>gi|111115526|ref|YP_710144.1| signal recognition particle protein [Borrelia afzelii PKo]
 gi|110890800|gb|ABH01968.1| signal recognition particle protein [Borrelia afzelii PKo]
          Length = 444

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 141/276 (51%), Gaps = 15/276 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF--- 103
           E +++ L+ +D+ + V ++ +  ++ +  +K V V R +   S+ I  +   L K     
Sbjct: 32  EIIKNSLVDADVNLRVIRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDNLVKFLGGK 89

Query: 104 NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           N++ S  P      IL++G+ G GKTT   KLS ++     KV+L A DTFR+AA++QLK
Sbjct: 90  NYELSLHPVNKQSYILMLGLQGSGKTTTSAKLSLRLKKENRKVLLVAADTFRAAAVEQLK 149

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I   +        E   D   +   + K A+++  D +I+DT GRL   S+L+  I K+ 
Sbjct: 150 ILGSQIGVPVFSLEGEKDPIKIVKASMKFAESEFFDSVIVDTRGRLEVESLLVEEIKKIK 209

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            +L+      P   + V+D+  GQ A+   + F+   G TG I +K D   RGG ++   
Sbjct: 210 GILQ------PTETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTRGGAVLSFK 263

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +P+ F+GVGE   DL+ F  +  ++ I G  D
Sbjct: 264 SICAVPIKFVGVGEKPEDLDSFYPERIASRILGMGD 299


>gi|320096199|ref|ZP_08027787.1| signal recognition particle protein [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319976864|gb|EFW08619.1| signal recognition particle protein [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 536

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 16/278 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRY-AKDVSVQRVLYDVSELIHKMLMPL--SKPFN 104
           E+   LI +D+ + V ++    +  K Y A           V  ++H  L+ +   +   
Sbjct: 33  EIRRALIDADVALPVVRQFTTRVREKAYGAARSKALNPGQQVVSIVHSELVEILGGQTRE 92

Query: 105 WDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
             F+ R P V ++ G+ G GKTT+ GKL K + + G  VML A D  R  A+ QL++  +
Sbjct: 93  LVFAERGPTVFMLAGLQGAGKTTLAGKLGKWLREEGKTVMLVASDLQRPNAVQQLQVVGE 152

Query: 164 RTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           R        E G+   D   +A    + A+   ++V+I+DTAGRL  +  +M       +
Sbjct: 153 RAGVKVWAPEPGNGVGDPVEVARSGVEFARQSGINVVIVDTAGRLGVDQEMMD------Q 206

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
            +   D  +PH ++ VLDA  GQ+A+     F    G TG++++K+DG ARGG  + +  
Sbjct: 207 AIAIRDAVSPHEIMFVLDAMVGQDAVSTSTAFRDGVGFTGVVLSKLDGDARGGAALSVRG 266

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
               P+ F   GEG++D E F A   +  I   LD G+
Sbjct: 267 VTGAPILFASTGEGLDDFERFHADRMAGRI---LDMGD 301


>gi|292670609|ref|ZP_06604035.1| signal recognition particle protein [Selenomonas noxia ATCC 43541]
 gi|292647775|gb|EFF65747.1| signal recognition particle protein [Selenomonas noxia ATCC 43541]
          Length = 458

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 145/285 (50%), Gaps = 14/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           ++   ++D +RE +   L+ +D+   V +  V+ +  +   +DV     + Q V+  V E
Sbjct: 23  LTEEDVNDAMRE-VRMALLEADVNFKVVKDFVKRVKERAVGQDVLDTLTAAQAVIKIVDE 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  ++       N    + P VI++ G+ G GKTT  GKL+  +   G + +L A D +
Sbjct: 82  ELTALMGGTESRLNIS-PNPPTVIMLAGLQGSGKTTSAGKLALMLKKQGKRPLLVADDIY 140

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI QL++   +     V S+   DA A+A  A   + A   DV+IIDTAGRL  +  
Sbjct: 141 RPAAIKQLEVIGAQVDVP-VFSQGQEDAVAIARAAIAYSAAHANDVVIIDTAGRLQIDET 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +  +   +K      PH +L V+DA TGQ A+   + F A  G  G+IMTK+DG A
Sbjct: 200 LMQELRDIKAAVK------PHEILLVVDAMTGQEAVNVAQSFDASLGLDGVIMTKLDGDA 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+G+GE +  LE F     ++ I G  D
Sbjct: 254 RGGAALSIKAVTGCPLKFVGMGEKLEPLEVFHPDRMASRILGMGD 298


>gi|110004366|emb|CAK98704.1| probable gtp-binding signal recognition particle srp54-homolog
           protein [Spiroplasma citri]
          Length = 452

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 10/211 (4%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT 165
           F+ +P +I++VG+ G GKTT  GK++K +      K +L A D +R AAI+QLK      
Sbjct: 96  FASKPTIIMMVGLQGSGKTTTTGKIAKLVEKKYHKKPLLVACDIYRPAAIEQLKTIGKNL 155

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           + + V      +    A +A   A+  K DV++IDTAGRLH ++ LM       + LK +
Sbjct: 156 NIE-VFERGMQNPITTAQQAITYAKDNKNDVILIDTAGRLHIDAELM-------QELKEI 207

Query: 226 DPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
             +  P  +L V+D  TGQ+ +     F+ +   TG+++TK+DG ARGG  + I    K+
Sbjct: 208 KNNITPDEILLVVDGMTGQDIINVATEFNQLLKLTGVVVTKLDGDARGGAALSITHLTKL 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GEG+++L+ F     +  I G  D
Sbjct: 268 PITFIGTGEGMSNLQIFYPDRMADRILGMGD 298


>gi|223932139|ref|ZP_03624143.1| signal recognition particle protein [Streptococcus suis 89/1591]
 gi|302023761|ref|ZP_07248972.1| signal recognition particle protein [Streptococcus suis 05HAS68]
 gi|330832793|ref|YP_004401618.1| signal recognition particle protein [Streptococcus suis ST3]
 gi|223899120|gb|EEF65477.1| signal recognition particle protein [Streptococcus suis 89/1591]
 gi|329307016|gb|AEB81432.1| signal recognition particle protein [Streptococcus suis ST3]
          Length = 524

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++ G+ G GKTT  GKL+ K+  +   + +L A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMAGLQGAGKTTFTGKLANKLKQEENARPLLIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAAL--AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              E+G+   AL    +  +QA+A   D ++IDTAGRL  +  LMA +    R +K    
Sbjct: 159 PVFELGNQVPALEIVRQGLEQAKANHNDYVLIDTAGRLQIDQALMAEL----REIKEF-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+     TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNDQLAITGVILTKIDGDTRGGAALSVRHITGQPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|320450462|ref|YP_004202558.1| signal recognition particle protein [Thermus scotoductus SA-01]
 gi|320150631|gb|ADW22009.1| signal recognition particle protein [Thermus scotoductus SA-01]
          Length = 434

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 144/309 (46%), Gaps = 28/309 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA  + +L+E I  +    R+ +        E+   L+ +D+ + VA+  VE +  K   
Sbjct: 2   FAKLAGRLQEAIDRLRGRGRITEEDLKATLREIRRALMDADVNLEVARAFVESVREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           + V       + VL  V E + + L      P  K  N  F        +VG+ G GKTT
Sbjct: 62  QKVLESLTPAEVVLATVYEALKEALGGEPRFPTLKNQNLWF--------LVGLQGSGKTT 113

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+      G + +L A DT R AA +QL+I  ++     +  + G    ++     
Sbjct: 114 TAAKLALFYKGKGRRPLLVAADTQRPAAREQLRILGEKIGVPVLEVQDGESPESIRRRVE 173

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ +  D++++DTAGRL  +  LMA + ++   +       P  VL VLDA TGQ AL
Sbjct: 174 ERARQEVRDLILVDTAGRLQIDEPLMAELARLKEAMN------PDEVLLVLDAMTGQEAL 227

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F    G TGLI+TK+DG ARGG  +        P+YF GV E    LE F     
Sbjct: 228 SVAKAFDERVGVTGLILTKLDGDARGGAALSARHVTGKPIYFAGVSERPEGLELFYPDRL 287

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 288 ASRILGMGD 296


>gi|254776215|ref|ZP_05217731.1| signal recognition particle protein [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 517

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 150/311 (48%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALAGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P VI++ G+ G GKT++ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELIGILGGETRQLAFAKTP-PTVIMLAGLQGSGKTSLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184
           +  +   G   +L A D  R AA++QL++  +R          G+       D  A+A +
Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAQ 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA     IR     D   P  +L VLDA  GQ+
Sbjct: 181 GLAEARAKHHDVVIVDTAGRLGIDDELMA-QAAAIR-----DAIDPDEILFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   E F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             S+ I G  D
Sbjct: 295 RMSSRILGMGD 305


>gi|31981338|ref|NP_036029.2| signal recognition particle 54 kDa protein [Mus musculus]
 gi|153791789|ref|NP_001093579.1| signal recognition particle 54 kDa protein [Mus musculus]
 gi|73622264|sp|P14576|SRP54_MOUSE RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|12848354|dbj|BAB27921.1| unnamed protein product [Mus musculus]
 gi|18043829|gb|AAH19683.1| Signal recognition particle 54a [Mus musculus]
 gi|74193669|dbj|BAE22786.1| unnamed protein product [Mus musculus]
          Length = 504

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAIQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|325998007|gb|ADZ50215.1| Signal recognition particle protein [Helicobacter pylori 2017]
          Length = 417

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 142/270 (52%), Gaps = 13/270 (4%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           ++  L+++D+   VA+++++++ ++     +  Q+ L     L   +L  LS   +  F+
Sbjct: 1   MKKTLLKNDVHHKVARELLKKVESQTKLSGIGKQQFL---DALEKSLLEILSAKGSSGFT 57

Query: 109 HR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
                P V+L+ G+ G GKTT   KL+  +     KV+L A D  R AA++QLK+  ++ 
Sbjct: 58  FAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQV 117

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             + V  E       +A  A K+A+  + DVL++D+AGRL  +  LM  + ++  VL   
Sbjct: 118 GVE-VFHEENKSVKEIANNALKRAKEAQFDVLLVDSAGRLAIDKELMQELKEVKEVLN-- 174

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               PH VL V DA +GQ+ ++    F+   G +G++++K D  ++GG  + I     +P
Sbjct: 175 ----PHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGITYQLGLP 230

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G GE I DL+ FV +     + G  D
Sbjct: 231 LRFIGSGEKIPDLDVFVPERIVGRLMGAGD 260


>gi|268611752|ref|ZP_06145479.1| signal recognition particle protein [Ruminococcus flavefaciens
           FD-1]
          Length = 460

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 129/235 (54%), Gaps = 10/235 (4%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           Q+V+  V+E +  ++   +   N+  S  P VI++ G+ G GKTT   KL+K +   G +
Sbjct: 73  QQVIKIVNEELVTLMGDSNARINF-ASKPPTVIMMCGLQGSGKTTHAAKLAKLLKKEGHR 131

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIID 200
            +LAA D +R AAIDQL++   +  AD    E+G  D   +A +A   A+    DVLIID
Sbjct: 132 PLLAACDVYRPAAIDQLQVVGQK--ADVKVFEMGQIDPVVIAKQALAHAKDYGHDVLIID 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRLH +  LM        ++K  +   P  ++ V+DA TGQ+A+   + F    G T 
Sbjct: 190 TAGRLHIDEALMD------ELVKIKEETQPTEIMLVVDAMTGQDAVNVAKAFDDAVGITS 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++M+K+D   RGG  + ++     P+ F+G+GE ++D E F  +  ++ I G  D
Sbjct: 244 VLMSKLDSDTRGGAALSVLAVTGKPIKFVGMGEKLDDFEQFHPERMASRILGMGD 298


>gi|255513535|gb|EET89801.1| signal recognition particle-docking protein FtsY [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 370

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 110/196 (56%), Gaps = 7/196 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P  IL +G NG GKTT I K++ K+    +  +++A DTFR+AAI+Q +  A    A+ +
Sbjct: 174 PVKILFLGPNGTGKTTTIAKVAYKLKKMNIPTVISASDTFRAAAIEQTEYHAKAVGAEVI 233

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S  G+D A++A++A   A++  +  ++IDTAGR   N  L++ + K++RV++      P
Sbjct: 234 KSGYGADPASVAFDAINYARSHGMPAVLIDTAGRQETNKNLLSEMQKIVRVVQ------P 287

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L V ++T G     Q++         G+I+TK+D  A+GG +I I  T  IPV  LG
Sbjct: 288 DITLFVGESTAGSIIAEQIKELSKAIKIDGIILTKIDCDAKGGSVISIADTTGIPVLLLG 347

Query: 291 VGEGINDLEPFVAKDF 306
            GE    L  + + DF
Sbjct: 348 SGESYEALSKY-SNDF 362


>gi|193580274|ref|XP_001951515.1| PREDICTED: signal recognition particle 54 kDa protein-like isoform
           1 [Acyrthosiphon pisum]
 gi|328716940|ref|XP_003246080.1| PREDICTED: signal recognition particle 54 kDa protein-like isoform
           2 [Acyrthosiphon pisum]
          Length = 504

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 137/287 (47%), Gaps = 26/287 (9%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL------------- 91
           + EE+ + +++ DI  A+ +  V  +L K+  ++V   R + D  E+             
Sbjct: 23  INEEVLNSMLK-DICAALLEANVNVMLVKKLRENV---RNVIDFDEMAGGLNKRRMIQSA 78

Query: 92  IHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + K L+ L  P    +     RP++I+ VG+ G GKTT   KL+        K  L   D
Sbjct: 79  VFKELVKLVDPGVKSYQPVKGRPNIIMFVGLQGSGKTTTCTKLAYYYLKKNWKTCLVCAD 138

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+ A DQLK  A +    F  S    D   +A +     + +  +++++DT+GR    
Sbjct: 139 TFRAGAYDQLKQNATKAQIPFYGSYTEVDPVVIAQDGVDMFKKEGFEIIVVDTSGRHKQE 198

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           + L   + ++   +K      P +++ V+DAT GQ    Q   F        +++TK+DG
Sbjct: 199 ASLFEEMLQVSNTIK------PDNIVFVMDATIGQACEGQARAFKDKVNIGSVVITKLDG 252

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            A+GGG +  V   K P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 253 HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTKPFVSKLLGMGD 299


>gi|41409081|ref|NP_961917.1| hypothetical protein MAP2983c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397440|gb|AAS05300.1| Ffh [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 517

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 150/311 (48%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALAGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P VI++ G+ G GKT++ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELIGILGGETRQLAFAKTP-PTVIMLAGLQGSGKTSLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184
           +  +   G   +L A D  R AA++QL++  +R          G+       D  A+A +
Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAQ 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA     IR     D   P  +L VLDA  GQ+
Sbjct: 181 GLAEARAKHHDVVIVDTAGRLGIDDELMA-QAAAIR-----DAIDPDEILFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   E F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             S+ I G  D
Sbjct: 295 RMSSRILGMGD 305


>gi|167761983|ref|ZP_02434110.1| hypothetical protein BACSTE_00328 [Bacteroides stercoris ATCC
           43183]
 gi|167700215|gb|EDS16794.1| hypothetical protein BACSTE_00328 [Bacteroides stercoris ATCC
           43183]
          Length = 440

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 140/265 (52%), Gaps = 13/265 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKSFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
              +    +   +P VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AAI+
Sbjct: 86  MGGETAEINIDSKPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++ A++            D  ++A  A ++A+AK  D++I+DTAGRL  +  +M  I 
Sbjct: 146 QLRVLAEQIEVPMYSEPDSKDPVSIAQNAIQEAKAKGYDLVIVDTAGRLAVDEEMMNEIA 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +   +       P+ +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 206 AIKSAIN------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I      P+ F+G GE ++ ++ F
Sbjct: 260 SIRTVVNKPIKFVGTGEKLDAIDQF 284


>gi|29829190|ref|NP_823824.1| signal recognition particle [Streptomyces avermitilis MA-4680]
 gi|29606296|dbj|BAC70359.1| putative signal recognition particle, subunit SRP54 [Streptomyces
           avermitilis MA-4680]
          Length = 516

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 136/267 (50%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++ +  +    +VS      Q+VL  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRTFIKNVKERALGSEVSKALNPAQQVLKIVNEELVTILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +   + P VI++ G+ G GKTT+ GKL K + D G   +L A D  R  A++Q
Sbjct: 88  GETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKLGKHLKDQGHSPILVAADLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+ K  D++I+DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFAKTKVHDIVIVDTAGRLGIDQELMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I      P+ F   GE ++D + F
Sbjct: 261 ALSIASVTGKPIMFASNGEKLDDFDAF 287


>gi|15806836|ref|NP_295559.1| signal recognition particle protein [Deinococcus radiodurans R1]
 gi|6459616|gb|AAF11391.1|AE002024_2 signal recognition particle protein [Deinococcus radiodurans R1]
          Length = 452

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 146/307 (47%), Gaps = 23/307 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S   KL++ +  +   R+L +  V+  + ++   L+ +D+   VA+  V  +  +   
Sbjct: 2   FESLGNKLQDILEKLGRERQLTEAQVKASMREIRMALLEADVNFGVAKDFVARVSEQAVG 61

Query: 77  KDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           + V        +V ++++D  EL+  +    ++P       + +V  +VG+ G GKTT  
Sbjct: 62  QQVLGSLNAGQTVIKLVHD--ELVQTLGGESAQP---SLDKKNNVWFMVGLQGAGKTTSS 116

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G KV+L A DT R AA DQL++ + +     +    G   A       + 
Sbjct: 117 GKLAAHYKKLGRKVLLVAADTQRPAARDQLEVLSKQVGVPVLKVNDGESPAETKARIEEH 176

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
                 D++I+DTAGRL  +  LM  +  +   L+      P   L V+DA TGQ AL  
Sbjct: 177 LARDPRDLVIVDTAGRLQIDEGLMNQLAALKAELQ------PTETLLVVDAMTGQEALNV 230

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G +GLIMTKMDG ARGG  +        P+YF GV E ++ LEPF     + 
Sbjct: 231 AQAFDERIGVSGLIMTKMDGDARGGAALSARSVTGKPIYFAGVSEKLSGLEPFYPDRVAG 290

Query: 309 VITGCLD 315
            I G  D
Sbjct: 291 RILGMGD 297


>gi|227833413|ref|YP_002835120.1| signal recognition particle protein [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184401|ref|ZP_06043822.1| signal recognition particle protein [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454429|gb|ACP33182.1| signal recognition particle protein [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 531

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 154/318 (48%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+  ++ +    +L +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FESLSDRLQSALSGLRGKGKLTEADINATAREIRLALLEADVSLNVVRGFIKRIKERAAG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPAQQVVKIVNEELIEILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177
           SK ++  G   ML A D  R  A+ QL+I  +R   D    + G+              D
Sbjct: 121 SKHLAAKGHTPMLVACDLQRPGAVQQLQIVGERAGVDVYAPDPGTSLDSHEHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A+  + D++IIDTAGRL  +  LM    + IR     D   P  VL V+
Sbjct: 181 PVDVAKRGIEEAKRTQHDIVIIDTAGRLGIDETLMT-QARNIR-----DAVNPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+A++  E F      TG+++TK+DG ARGG  + I      P+ F   GE + D
Sbjct: 235 DSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F  +  S+ I G  D
Sbjct: 295 FDVFHPERMSSRILGMGD 312


>gi|329955639|ref|ZP_08296547.1| signal recognition particle protein [Bacteroides clarus YIT 12056]
 gi|328526042|gb|EGF53066.1| signal recognition particle protein [Bacteroides clarus YIT 12056]
          Length = 440

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 140/265 (52%), Gaps = 13/265 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKSFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
              +    +   +P VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AAI+
Sbjct: 86  MGGETAEINIDSKPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++ A++            D  A+A  A ++A+AK  D++I+DTAGRL  +  +M  I 
Sbjct: 146 QLRVLAEQIEVPMYSEPDSKDPVAIAQNAIQEAKAKGYDLVIVDTAGRLAVDEEMMNEIA 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +   +       P+ +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 206 AIKAAIN------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I      P+ F+G GE ++ ++ F
Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQF 284


>gi|126658775|ref|ZP_01729919.1| signal recognition particle protein [Cyanothece sp. CCY0110]
 gi|126619873|gb|EAZ90598.1| signal recognition particle protein [Cyanothece sp. CCY0110]
          Length = 488

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 142/281 (50%), Gaps = 29/281 (10%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D I+   + D ++E +   L+ +D+ + V +  + ++       +V         + +++
Sbjct: 20  DKITEANMQDALKE-VRRALLEADVNLQVVKTFIADVEKAAIGAEVIAGVNPGQQLIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL++  N      P VIL+ G+ G GKTT   KL+  +       
Sbjct: 79  YD--ELVKVMGESNVPLAQAENA-----PTVILMAGLQGTGKTTATAKLALYLRKQQRSA 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIID 200
           ++ A D +R AAIDQL    ++   D    E+G+ A    +A +  ++A+   +D +IID
Sbjct: 132 LMVATDIYRPAAIDQLITLGEQI--DVPVFELGNQANPVDIATQGVEKAKEMGIDTVIID 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  +M    ++ RV K ++P      L V+DA TGQ A      FH   G TG
Sbjct: 190 TAGRLQIDEEMML---ELSRVKKAVNPD---DTLLVVDAMTGQEAANLTRTFHDQIGVTG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            I+TKMDG  RGG  + +      P+ F+GVGE +  L+PF
Sbjct: 244 AILTKMDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPF 284


>gi|300728157|ref|ZP_07061528.1| signal recognition particle protein [Prevotella bryantii B14]
 gi|299774583|gb|EFI71204.1| signal recognition particle protein [Prevotella bryantii B14]
          Length = 449

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 136/285 (47%), Gaps = 25/285 (8%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHK 94
            V E ++D+   L+ +D+   VA+       T R  +    Q VL  VS      +L+H 
Sbjct: 26  NVAETMKDIRRALLDADVNFKVAKD-----FTNRVKEKALGQNVLTAVSPGQMLVKLVHD 80

Query: 95  MLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFR 151
            L  L   +        RP +IL+ G+ G GKTT  GKL+  +     K  +L A D +R
Sbjct: 81  ELAELMGGESVPMKLEGRPAIILMSGLQGSGKTTFSGKLANLLKAKQHKNPLLVACDVYR 140

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            AAIDQLK+  +       C     D  ++A  A ++A+AK  DV+IIDTAGRL  +  +
Sbjct: 141 PAAIDQLKVVGESVGVPVYCEPENKDVLSIADHALQEAKAKSHDVVIIDTAGRLAIDEQM 200

Query: 212 MAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           M  I         L  H  P   L V+D+ TGQ+A+   + F+      G+++TK+DG  
Sbjct: 201 MTEIS-------NLKNHVHPDETLFVVDSMTGQDAVNTAKEFNERLDFDGVVLTKLDGDT 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+G GE +  L+ F     +  I G  D
Sbjct: 254 RGGAALSIRTVVDKPIKFIGTGEKMEALDVFHPSRMADRILGMGD 298


>gi|104783234|ref|YP_609732.1| GTP-binding signal recognition particle protein [Pseudomonas
           entomophila L48]
 gi|95112221|emb|CAK16948.1| 4.5S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Pseudomonas
           entomophila L48]
          Length = 458

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 156/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSI--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N + +     P V+L+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEELTLNAAPPAVVLMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I     A+A  A ++A
Sbjct: 120 LARHLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH ++ +M  I  +   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFIDVVIVDTAGRLHVDADMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGDALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|160892009|ref|ZP_02073012.1| hypothetical protein BACUNI_04468 [Bacteroides uniformis ATCC 8492]
 gi|270296343|ref|ZP_06202543.1| signal recognition particle protein [Bacteroides sp. D20]
 gi|317480461|ref|ZP_07939556.1| signal recognition particle protein [Bacteroides sp. 4_1_36]
 gi|156858487|gb|EDO51918.1| hypothetical protein BACUNI_04468 [Bacteroides uniformis ATCC 8492]
 gi|270273747|gb|EFA19609.1| signal recognition particle protein [Bacteroides sp. D20]
 gi|316903376|gb|EFV25235.1| signal recognition particle protein [Bacteroides sp. 4_1_36]
          Length = 440

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 141/267 (52%), Gaps = 17/267 (6%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKM 95
            V E L+D+   L+ +D+   VA+   + +  K   ++V       Q ++  V + + ++
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAA 154
           +   +   N D   +P +IL+ G+ G GKTT  GKL++ + S    K +L A D +R AA
Sbjct: 86  MGGETSEINLD--SKPAIILMSGLQGSGKTTFSGKLARMLKSKKNKKPLLVACDVYRPAA 143

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           I+QL++ A++            +  A+A  A ++A+AK  D++I+DTAGRL  +  +M  
Sbjct: 144 IEQLRVLAEQIDVPMYSEPDSKNPVAIAQNAIQEAKAKGYDLVIVDTAGRLAVDEEMMNE 203

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           I  + + +       P  +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG 
Sbjct: 204 IAAIKKAIN------PDEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGA 257

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I      P+ F+G GE ++ ++ F
Sbjct: 258 ALSIRSVVNKPIKFVGTGEKLDAIDQF 284


>gi|110639137|ref|YP_679346.1| signal recognition particle subunit FFH/SRP54 [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110281818|gb|ABG60004.1| signal recognition particle subunit FFH/SRP54 (srp54) [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 443

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 141/278 (50%), Gaps = 21/278 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR-VLYDVS------ELIHKMLMPL 99
           +E+   LI +D+   VA+ + +++      K++++ R VL  VS      ++ H+ L  L
Sbjct: 32  KEIRKALIDADVNYKVAKSVTDDI------KEIALGREVLISVSPGQLLVKITHEELTKL 85

Query: 100 SKPFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                 + S +  P VIL+ G+ G GKTT  GKL+  +      V+L A D +R AAIDQ
Sbjct: 86  MGGEKQEISLKGDPSVILIAGLQGSGKTTFSGKLAAYIKKQNRNVLLVACDVYRPAAIDQ 145

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LK+  ++   +            ++  A + A+     V+IIDTAGRL  +  +M  I +
Sbjct: 146 LKVLGEQVGVEVYTEPDNKKPVEISKNAIEYAKKNNKKVVIIDTAGRLAIDEQMMNEIAE 205

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + + ++      P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  I 
Sbjct: 206 VKKAIQ------PSETLFVVDSMTGQDAVNTAKAFNDRINFDGVVLTKLDGDTRGGAAIS 259

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I    + P+ F+  GE ++ L+ F  +  ++ I G  D
Sbjct: 260 IRAVVEKPIKFISTGEKMDALDVFYPERMASRILGMGD 297


>gi|296139328|ref|YP_003646571.1| signal recognition particle protein [Tsukamurella paurometabola DSM
           20162]
 gi|296027462|gb|ADG78232.1| signal recognition particle protein [Tsukamurella paurometabola DSM
           20162]
          Length = 522

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 154/317 (48%), Gaps = 29/317 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ +    RL D        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLGGALSGLRGKGRLTDADIDATAREIRLALLEADVALPVVRAFVSRIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++  N   +  P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQIVKIVNEELVGILGGETRRINLAKTP-PTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----TSADFVCSEIG---------SDA 178
           +  +   G   ML A D  R  A+DQLKI  +R    T A    + +G         +D 
Sbjct: 121 AHHLKKQGHTPMLVACDLQRPGAVDQLKIVGERAGVPTYAPHPGTSVGGEGTLGVSAADP 180

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A    ++A+AK+ DV+I+DTAGRL  +  LM G  + IR     D   P  VL VLD
Sbjct: 181 VEVARGGIEEAKAKQHDVVIVDTAGRLGIDEELM-GQARAIR-----DAVDPDEVLFVLD 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+   + F      TG+++TK+DG ARGG  + +      P+ F   GE ++D 
Sbjct: 235 AMIGQDAVTTAQAFAEGVDFTGVVLTKLDGDARGGAALSVREITGKPILFASTGEKLDDF 294

Query: 299 EPFVAKDFSAVITGCLD 315
           + F     S+ I G  D
Sbjct: 295 DVFHPDRMSSRILGMGD 311


>gi|160880541|ref|YP_001559509.1| signal recognition particle protein [Clostridium phytofermentans
           ISDg]
 gi|160429207|gb|ABX42770.1| signal recognition particle protein [Clostridium phytofermentans
           ISDg]
          Length = 454

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 149/304 (49%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++    +L +        E++  L+ +D+   V +  V  +  +   
Sbjct: 3   FESLSEKLQNVFKNLRGKGKLSEADVKLALREVKMALLEADVNFKVVKNFVNSVQERAIG 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V+E + K++   +            VI++ G+ G GKTT I KL
Sbjct: 63  QEVMTSLTPGQMVVKIVNEEMVKLMGDETTELTLKPGSEITVIMMCGLQGAGKTTTIAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G K +L A D +R AA+DQL+I  ++                +A  A + A  
Sbjct: 123 AGKFKAKGKKPLLVACDIYRPAAVDQLQINGEKQGVPVFAMGTNHKPVNIAKAAMEHAAK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++IIDTAGRLH +  +M    ++I + + +  H  H +L V DA TGQ+A+   E 
Sbjct: 183 NGNNIVIIDTAGRLHIDEDMM---DELIEIKENI--HIDHVILTV-DAMTGQDAVNVAET 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FNEKIGITGVILTKLDGDTRGGAALSIRAVTGKPILYIGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|76788737|ref|YP_327823.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis A/HAR-13]
 gi|237804374|ref|YP_002888528.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|76167267|gb|AAX50275.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis A/HAR-13]
 gi|231272674|emb|CAX09577.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis B/TZ1A828/OT]
          Length = 448

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 112/204 (54%), Gaps = 9/204 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           P VIL+ G+ G GKTT   KL+          KV++A+ D  R +A++QL+    +T AD
Sbjct: 99  PAVILLCGLQGAGKTTTCAKLADYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGAD 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F   E G+D   +A EA + A+++  D++++DTAGRLH +  LM  +  + RV       
Sbjct: 159 FFRRE-GNDPVDMAAEAVQHAKSQGYDLVLVDTAGRLHVDDALMDELVAIARV------T 211

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           +P+  L V++   GQ+A+   + F    G TG++++  DG AR G ++ +      P+ F
Sbjct: 212 SPYETLFVMNLAMGQDAVVTAKAFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312
            G GE I DL PF A+  +  I G
Sbjct: 272 EGCGEKIKDLRPFNAQSMAERILG 295


>gi|197284282|ref|YP_002150154.1| signal recognition particle protein [Proteus mirabilis HI4320]
 gi|227357814|ref|ZP_03842162.1| signal recognition particle protein [Proteus mirabilis ATCC 29906]
 gi|194681769|emb|CAR40980.1| signal recognition particle protein [Proteus mirabilis HI4320]
 gi|227161924|gb|EEI46942.1| signal recognition particle protein [Proteus mirabilis ATCC 29906]
          Length = 453

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 153/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL ++ +++ L ++   L+ +D+ + V ++ +  +  K  A
Sbjct: 2   FENLSDRLSRTLRNISGRGRLTEENIKDTLREVRMALLEADVALPVVREFIARV--KESA 59

Query: 77  KDVSVQRVLYDVSE---LIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGK 130
               V + L    E   ++   L+      N D    +  P V+L+ G+ G GKTT + K
Sbjct: 60  VGHEVNKSLTPGQEFVKIVQNELVNAMGEVNNDLDLSAQPPAVVLMAGLQGAGKTTSVAK 119

Query: 131 LSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +   K +L  + D +R AAI QL+  A+    DF  S +  +   +A  A K A
Sbjct: 120 LGKFLKEKKKKKVLVVSADVYRPAAIKQLETLAETVGVDFFPSTVQENPVTIASNALKHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q +  DVL++DTAGRLH +  +M  I  + + +       P   L V+DA TGQ+A    
Sbjct: 180 QLQFYDVLLVDTAGRLHVDEGMMEEIQLLHKAIN------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ 
Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|257216394|emb|CAX82402.1| Signal recognition particle 54 kDa protein [Schistosoma japonicum]
          Length = 461

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 6/196 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+VI++VG+ G GKTT   KL+      G K  +   DTFR+ A DQLK  A +    F 
Sbjct: 101 PNVIMLVGLQGCGKTTTATKLAYFYQRKGWKTCMICADTFRAGAFDQLKQNATKARIPFY 160

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S   +D   +A +  ++   +K +++I+DT+GR      L     +M++V   ++   P
Sbjct: 161 GSYTETDPVVIARDGVQKFVEEKFEIIIVDTSGRHRQEDSLFE---EMLQVSNAIE---P 214

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V+ VLDA+ GQ    Q   F A    + +I+TK+DG A+GGG +  V     P+ F+G
Sbjct: 215 DHVIYVLDASIGQACEAQASAFKAKVDVSSVIVTKLDGHAKGGGALSAVAATHSPITFIG 274

Query: 291 VGEGINDLEPFVAKDF 306
            GE + D E F  + F
Sbjct: 275 TGEHVEDFEQFRVQPF 290


>gi|253578963|ref|ZP_04856234.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849906|gb|EES77865.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 451

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 152/313 (48%), Gaps = 33/313 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEELLTKRYAKDV 79
           F S + KL+     + S  RL +      ED+ L   ++ +A+ +  V   + K++ K V
Sbjct: 3   FESLTDKLQNVFKKLRSKGRLTE------EDVKLALKEVKMALLEADVNFKVVKQFTKSV 56

Query: 80  SVQRVLYDVS----------ELIHKMLMPLSKPFNWDFSHRP----HVILVVGVNGVGKT 125
             Q +  DV           ++++  L+ L      D   RP     V ++ G+ G GKT
Sbjct: 57  QEQAIGQDVMSGLNPGQMVIKIVNDELVKLMGSETTDLPLRPGNEITVFMMAGLQGAGKT 116

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T + KL+ K+   G K +L A D +R AAI QL++  ++   +            +A  A
Sbjct: 117 TTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQKPVDIAKAA 176

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILM---AGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            + A+A + +V++IDTAGRLH +  +M   A I   I+V          + + ++DA TG
Sbjct: 177 IEHAKANQQNVVLIDTAGRLHVDEDMMQELADIKANIQV---------DATILIVDAMTG 227

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+     F    G  G+I+TKMDG  RGG  + I      P+ ++G+GE ++DLE F 
Sbjct: 228 QDAVNVASTFADKVGIDGVILTKMDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFY 287

Query: 303 AKDFSAVITGCLD 315
            +  ++ I G  D
Sbjct: 288 PERMASRILGMGD 300


>gi|193222405|emb|CAL62893.2| Signal recognition particle protein (Fifty-four homolog)
           [Herminiimonas arsenicoxydans]
          Length = 455

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 110/207 (53%), Gaps = 8/207 (3%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAA 154
           L P +   N+  +  P +IL+ G+ G GKTT +GKL+K + +   K V+  + D +R AA
Sbjct: 90  LGPEASQLNF-ATQPPAIILMAGLQGAGKTTTVGKLAKYLREQKKKKVLTVSADVYRPAA 148

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           I QLK   ++  ADF  SEI      +A  A   A+    DVLIIDTAGRL  +  +M  
Sbjct: 149 IGQLKTVTEQVGADFFPSEITDKPVDIALAALDYAKRHYHDVLIIDTAGRLGIDEAMMQE 208

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           I  +   +K      P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG 
Sbjct: 209 ISAIHAAVK------PIETLFVVDAMLGQDAINTAKAFSDALPLTGIVLTKLDGDSRGGA 262

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + +      P+ F GV E ++ LE F
Sbjct: 263 ALSVRHITGKPIKFAGVAEKLDGLEAF 289


>gi|255010648|ref|ZP_05282774.1| signal recognition particle protein [Bacteroides fragilis 3_1_12]
 gi|313148460|ref|ZP_07810653.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137227|gb|EFR54587.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 439

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 146/266 (54%), Gaps = 15/266 (5%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKGFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
              +    D   +P VIL+ G+ G GKTT  GKL++ + +    + +L A D +R AAI+
Sbjct: 86  MGGETVEIDTKGQPAVILMSGLQGSGKTTFSGKLARMLKTKKNKRPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           QL++ A++     + SEI S D  A+A  A K+A+AK  D++I+DTAGRL  +  +M  I
Sbjct: 146 QLRVLAEQIDVP-MYSEIDSKDPVAIAQNAIKEARAKGYDLVIVDTAGRLAVDEQMMNEI 204

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +   ++      P+ +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  
Sbjct: 205 AAIKEAIQ------PNEILFVVDSMTGQDAVNTAKEFNERLDFDGVVLTKLDGDTRGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPF 301
           + I      P+ F+G GE ++ ++ F
Sbjct: 259 LSIRSVVNKPIKFVGTGEKLDAIDQF 284


>gi|296135007|ref|YP_003642249.1| signal recognition particle protein [Thiomonas intermedia K12]
 gi|295795129|gb|ADG29919.1| signal recognition particle protein [Thiomonas intermedia K12]
          Length = 449

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 112/215 (52%), Gaps = 8/215 (3%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKI 160
           P N   +  P ++L+ G+ G GKTT   KL++ +++    KV+  + D +R AAI QL+ 
Sbjct: 92  PINL-ATQPPAIVLMAGLQGAGKTTTTAKLARLLTERQKKKVLTVSCDVYRPAAIAQLQT 150

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
              +  A+F  S        +A  A + A++   DVL++DTAGRL  +  +M  I ++  
Sbjct: 151 VTAQAGAEFFPSSPDDKPLDIARRAVEFARSHHFDVLLVDTAGRLSVDEAMMREIKELHA 210

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
            LK      P   L V+DA  GQ+A+     FH     TG+++TK+DG ARGG  + +  
Sbjct: 211 ALK------PIETLFVVDAMQGQDAVNTARAFHDTLPLTGIVLTKLDGDARGGAALSVRQ 264

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+ F GV E I+ LEPF  +  +  I G  D
Sbjct: 265 VTGAPIKFAGVSEKIDGLEPFDPRRMADRILGMGD 299


>gi|288924926|ref|ZP_06418862.1| signal recognition particle protein [Prevotella buccae D17]
 gi|288338116|gb|EFC76466.1| signal recognition particle protein [Prevotella buccae D17]
          Length = 447

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 106/196 (54%), Gaps = 7/196 (3%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRT 165
             +RP +IL+ G+ G GKTT  GKL+  +     K  +L A D +R AAIDQLK+  ++ 
Sbjct: 95  LKNRPAIILMSGLQGSGKTTFSGKLANMLKTKEHKNPLLVACDVYRPAAIDQLKVVGEQV 154

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                      D  A+A  A K+A+AK  DV+IIDTAGRL  +  +M  I  + + +   
Sbjct: 155 GVPVYAEPDNKDVIAIAANALKEAKAKNYDVVIIDTAGRLAVDEQMMTEISNLKQAV--- 211

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              +P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I      P
Sbjct: 212 ---SPDETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKP 268

Query: 286 VYFLGVGEGINDLEPF 301
           + F+G GE +  ++ F
Sbjct: 269 IKFIGTGEKMEAIDVF 284


>gi|227504770|ref|ZP_03934819.1| signal recognition particle protein [Corynebacterium striatum ATCC
           6940]
 gi|227198620|gb|EEI78668.1| signal recognition particle protein [Corynebacterium striatum ATCC
           6940]
          Length = 541

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 26/282 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  ++ +  +    +VS      Q+V+  V+E +  +L   ++   +  
Sbjct: 38  LLEADVSLTVVRAFIKRIKERAAGAEVSEALNPAQQVIKIVNEELVDILGGETRRLQF-A 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
            + P VI++ G+ G GKTT+ GKL+K +S  G   ML A D  R  A+ QL+I  +R   
Sbjct: 97  KNPPTVIMLAGLQGAGKTTLAGKLAKHLSKQGHTPMLVACDLQRPGAVQQLQIVGERAEV 156

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   TS D    E+G+   D  A+A    ++A+  + D++IIDTAGRL  +  LM 
Sbjct: 157 AVFAPDPGTSIDSHEHEMGTSHGDPVAVAQAGIEEAKRSQHDIVIIDTAGRLGIDETLMT 216

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              + IR     D   P  VL V+D+  GQ+A++  E F      TG+++TK+DG ARGG
Sbjct: 217 Q-ARNIR-----DAVNPDEVLFVIDSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGG 270

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F   GE + D + F  +  ++ I G  D
Sbjct: 271 AALSIREVTGKPIMFASTGEKLQDFDVFHPERMASRILGMGD 312


>gi|148549466|ref|YP_001269568.1| signal recognition particle protein [Pseudomonas putida F1]
 gi|148513524|gb|ABQ80384.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pseudomonas
           putida F1]
 gi|313500314|gb|ADR61680.1| Ffh [Pseudomonas putida BIRD-1]
          Length = 458

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 156/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KDRA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D +     P V+L+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLALNAAPPAVVLMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I     A+A  A ++A
Sbjct: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH ++ +M  I  +   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFIDVVIVDTAGRLHIDADMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 234 KAFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|308799976|ref|XP_003074769.1| SrrA undefined product (IC) [Ostreococcus tauri]
 gi|116061309|emb|CAL52027.1| SrrA undefined product (IC) [Ostreococcus tauri]
          Length = 502

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 149/324 (45%), Gaps = 50/324 (15%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVRE---ELEDLLIRSDIGVAVA 63
           A E   W R+L   F+  +L + E            D VR      +  L++ ++   V+
Sbjct: 194 AGEFAGWCRRL---FSMGTLTIHE------------DSVRSIMFSFKKKLMKRNVTSEVS 238

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSH--------R 110
             +V+E+  K   K+++       V  +IH+ L       LS     D  H        R
Sbjct: 239 DMLVDEVSRKLIGKEITT---FESVMTIIHRSLEEAVIRVLSSARKVDILHDINRVGKSR 295

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+VI  VGVNGVGK+T + KL   ++     VM+AA DTFR+ A++QL+    R      
Sbjct: 296 PYVITFVGVNGVGKSTSLSKLVYWLTQQNFSVMVAACDTFRAGAVEQLRTHCHRLGCALY 355

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 D + +A +A +QA  + +DV++IDTAGR+ +N  LM  + K++ V K      P
Sbjct: 356 ERGYERDPSTIAQQAIQQATRQNIDVVMIDTAGRMQDNEPLMRSLAKLLNVNK------P 409

Query: 231 HSVLQVLDATTGQNALRQVEMFH-------AVAG--TTGLIMTKMDGT-ARGGGLIPIVV 280
                V DA  G + + Q+  F         ++G    G+ +TK D    + G  + +V 
Sbjct: 410 DFTFFVGDALVGNDGVSQILQFERRLQELTELSGGVIDGIFLTKFDTIDEKVGAALSLVH 469

Query: 281 THKIPVYFLGVGEGINDLEPFVAK 304
              IPV F+G G+   DL  F A+
Sbjct: 470 ASAIPVLFVGTGQTYGDLRRFQAE 493


>gi|71275946|ref|ZP_00652229.1| Signal recognition particle protein [Xylella fastidiosa Dixon]
 gi|71902277|ref|ZP_00684273.1| Signal recognition particle protein [Xylella fastidiosa Ann-1]
 gi|170729299|ref|YP_001774732.1| signal recognition particle protein [Xylella fastidiosa M12]
 gi|71163323|gb|EAO13042.1| Signal recognition particle protein [Xylella fastidiosa Dixon]
 gi|71727973|gb|EAO30192.1| Signal recognition particle protein [Xylella fastidiosa Ann-1]
 gi|167964092|gb|ACA11102.1| signal recognition particle protein [Xylella fastidiosa M12]
          Length = 455

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 153/291 (52%), Gaps = 17/291 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   I  +    RL ++ +RE   E+   L+ +D+ ++V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALSVVQALIERIKIRALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P VIL+ G+ G GKT+++GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELAAVMGDSASELNLNVPA-PAVILLAGLQGAGKTSMVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K V++ + D +R AAI+QL+I +++ +     S +G +   +   A   A+
Sbjct: 121 AKYLKEKRKKKVLVVSADVYRPAAIEQLRILSEQVNVLCFPSSVGQNPVDIVRAAIADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  +  +M  I  +       D   P   L V+D+ TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDQGMMDEIKAL------HDTLVPVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            F      TG+I+TK DG ARGGG + +      P+ F+G GE ++DL+ F
Sbjct: 235 AFSEALPLTGVILTKTDGDARGGGALSVRYITGRPIKFVGTGEKVDDLDVF 285


>gi|167753500|ref|ZP_02425627.1| hypothetical protein ALIPUT_01774 [Alistipes putredinis DSM 17216]
 gi|167658125|gb|EDS02255.1| hypothetical protein ALIPUT_01774 [Alistipes putredinis DSM 17216]
          Length = 443

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 138/274 (50%), Gaps = 12/274 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPLSKPFN 104
           +E+   LI +D+   VA+   +E+  K   +DV  SV+     +++++   L  L     
Sbjct: 32  KEIRRALIDADVNYKVAKSFTDEVKQKALGQDVLKSVKPGQM-ITKIVRDELAQLMGGTA 90

Query: 105 WD--FSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIW 161
            D      P VIL+ G+ G GKTT  GKL+  + S  G +V+L AGD +R AAIDQLK+ 
Sbjct: 91  TDIKLEGTPAVILIAGLQGSGKTTFSGKLAAMLKSKKGRQVLLVAGDVYRPAAIDQLKVL 150

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +   +    E   +   +A  A K A+    +V+I+DTAGRL  +  +M  I  + + 
Sbjct: 151 GGQIGVEVYTEEGNKNPVQIAENAIKYARQHGFNVVIVDTAGRLAVDEAMMQEITAIKQA 210

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +K      P   L V+D+ TGQ+A+     F+      G+++TK+DG  RGG  I I   
Sbjct: 211 VK------PGETLFVVDSMTGQDAVNTAREFNQRLDFDGVVLTKLDGDTRGGAAISIRAV 264

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ F+  GE ++ ++ F  +  +  I G  D
Sbjct: 265 VNKPLKFISSGEKMDAIQVFHPERMADRILGMGD 298


>gi|312140440|ref|YP_004007776.1| signal recognition particle protein [Rhodococcus equi 103S]
 gi|311889779|emb|CBH49096.1| signal recognition particle protein [Rhodococcus equi 103S]
          Length = 526

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 151/318 (47%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL     D    E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FESLSDRLTGALKDLRGKGRLSGADIDATCREIRLALLEADVALPVVRTFIAKIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKIVNEELVGILGGETRRLQFAKTP-PTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177
           +K + D G   +L A D  R  A+ QL+I  +R  A       G+              D
Sbjct: 121 AKWLKDQGHTPLLVACDLQRPGAVSQLQIVGERAGAAVFAPHPGTSIGGGENPLGISAAD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A+ K+ DV+I+DTAGRL  +  LMA     IR     D   P   + VL
Sbjct: 181 PVEVARAGVEEARNKQYDVVIVDTAGRLGIDEELMAQAAG-IR-----DAVQPDETIFVL 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F +  G TG+++TK+DG ARGG  + +      P+ F   GE + D
Sbjct: 235 DAMIGQDAVHTAEAFKSGVGFTGVVLTKLDGDARGGAALSVREVTGEPILFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     ++ I G  D
Sbjct: 295 FDVFHPDRMASRILGMGD 312


>gi|294155954|ref|YP_003560338.1| signal recognition particle protein [Mycoplasma crocodyli MP145]
 gi|291600518|gb|ADE20014.1| signal recognition particle protein [Mycoplasma crocodyli MP145]
          Length = 448

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 119/231 (51%), Gaps = 12/231 (5%)

Query: 90  ELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVML 144
           +++H+ L+ +   K        +P++I++ G+ G GKTT + KLS   KK  +   K ++
Sbjct: 76  KIVHEELIKVLGGKVVELKIEKKPYIIMMCGLQGSGKTTAVAKLSYYFKKKHNIE-KPLV 134

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            A D +R AA+DQL   A     D+      + A  +   A  +A   K D++IIDTAGR
Sbjct: 135 VAADIYRPAAVDQLVTLAKSIQVDYYQEGTNNTAENIVKNALDEAYKNKNDLIIIDTAGR 194

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           L  +  LM  +  + ++ K      P  +L V DA +GQ+ +   E FH+    TG I+T
Sbjct: 195 LSIDEKLMQELQNIKKIAK------PDEILFVSDALSGQDIINVAETFHSNLKLTGSIIT 248

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           K+D  ARGG  + I     +P+ F+G GE +++L+ F     +  I G  D
Sbjct: 249 KLDSDARGGAALSIRQVLNLPIRFIGTGEKVSNLDLFYPDRMADRILGMGD 299


>gi|302654315|ref|XP_003018965.1| hypothetical protein TRV_06976 [Trichophyton verrucosum HKI 0517]
 gi|291182655|gb|EFE38320.1| hypothetical protein TRV_06976 [Trichophyton verrucosum HKI 0517]
          Length = 650

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLY-DVSELIHKMLMP----- 98
           +ED L++ ++    A ++ E    EL+ K+ A   S+   L   +   + K+L P     
Sbjct: 361 MEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQSIDSALRAGMESSLRKILTPTTSLD 420

Query: 99  -------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                  ++ P N     RP+VI VVGVNGVGK+T + KL   +     KV++AA DTFR
Sbjct: 421 LLREIEVVTSPTNQQQPRRPYVISVVGVNGVGKSTNLSKLCFFLLQNKYKVLIAACDTFR 480

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A   A     DV++ID
Sbjct: 481 SGAVEQLRVHA-RNLKELSARENAGHVELYEKGYGKDAANVAKDAVAYAATNDFDVVLID 539

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +         P  +L V +A  G +++ Q   F+   G   
Sbjct: 540 TAGRRHNDQRLMSSLEKFAKFAN------PDKILMVGEALVGTDSVMQARNFNQAFGPGR 593

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 594 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 636


>gi|229918605|ref|YP_002887251.1| signal recognition particle protein [Exiguobacterium sp. AT1b]
 gi|229470034|gb|ACQ71806.1| signal recognition particle protein [Exiguobacterium sp. AT1b]
          Length = 446

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 144/279 (51%), Gaps = 33/279 (11%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS---------VQRVLYDVSELIHKMLMPLSKPF 103
           L+ +D+   V ++ V ++  +   +DV          V+ V  ++S L+   ++P++   
Sbjct: 39  LLEADVNFKVVKQFVNDVKERAVGQDVMKSLTPGQQVVKIVHEELSNLMGSDVVPIT--- 95

Query: 104 NWDFSHRPH-VILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAIDQL 158
              FS +P  V+++VG+ G GKTT  GKL+    KK + + L   L A D +R AAI QL
Sbjct: 96  ---FSQKPPTVVMMVGLQGAGKTTTTGKLANLIRKKHNRSPL---LVAADIYRPAAIKQL 149

Query: 159 KIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           +    +   D     +G       +  +A + A+    D ++IDTAGRLH +  LM  + 
Sbjct: 150 ETLGKQL--DLPVFSLGDQVKPEEIVTKALEYAKTNHHDFVLIDTAGRLHIDETLMGELE 207

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +  + K      P+ +  V+D+ TGQ+A+   + F+   G TG+++TK+DG  RGG  +
Sbjct: 208 NVKTIAK------PNEIFLVVDSMTGQDAVNVADSFNEKLGITGVVLTKLDGDTRGGAAL 261

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I      P+ F+G+GE ++ LEPF  +  ++ I G  D
Sbjct: 262 SIKAVTGAPIKFVGLGEKLDALEPFHPERMASRILGMGD 300


>gi|163750612|ref|ZP_02157849.1| signal recognition particle protein Ffh [Shewanella benthica KT99]
 gi|161329607|gb|EDQ00598.1| signal recognition particle protein Ffh [Shewanella benthica KT99]
          Length = 457

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 151/308 (49%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V++ L ++   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEDNVKDTLREVRMALLEADVALPVVRAFVNSVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +   +  +++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  HEVSKSLSPGQAFIKIVQSELENAMGEVNEGLDLS-AQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K V++ + D +R AAI QL+  A      F  S++      +   A   A+
Sbjct: 121 GKFLREREKKSVLVVSADVYRPAAIKQLETLAIEVDVQFFPSDVSQKPIDIVKAALAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K +DV+I+DTAGRLH +  +M  I  +         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFIDVVIVDTAGRLHVDEGMMDEIKAL---------HAAVNPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LE F     +
Sbjct: 232 TAKAFNEALPLTGIILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEAFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|333031351|ref|ZP_08459412.1| signal recognition particle protein [Bacteroides coprosuis DSM
           18011]
 gi|332741948|gb|EGJ72430.1| signal recognition particle protein [Bacteroides coprosuis DSM
           18011]
          Length = 441

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 151/298 (50%), Gaps = 23/298 (7%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE L    KL KG  +        IT+I  +  L D VR  L D    +D+   VA+K  
Sbjct: 6   SERLERSFKLLKGEGT--------ITEINVAETLKD-VRRALLD----ADVNYKVAKKFT 52

Query: 68  EELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGK 124
           + +  K   +DV +  +    + +++H  L  L   +  ++D   +P VIL+ G+ G GK
Sbjct: 53  DTVKEKALGQDVLTAVKPSQLMVKIVHDELTQLMGGETADFDVQGKPAVILMSGLQGSGK 112

Query: 125 TTVIGKLSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT  GKL+K +        +L A D +R AAIDQLK+  ++ +          D   +A 
Sbjct: 113 TTFSGKLAKLLKTKKHKSPLLVACDVYRPAAIDQLKVLGEQINVPVYAEPDSKDPVKIAQ 172

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A ++A+AK  D++IIDTAGRL  +  +M  I  + + +       P+ VL V+D+ TGQ
Sbjct: 173 NAIQEAKAKGNDIVIIDTAGRLAIDEQMMNEIESIKKAIN------PNEVLFVVDSMTGQ 226

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +A+   + F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F
Sbjct: 227 DAVNTAKEFNERLNFDGVVLTKLDGDTRGGAALSIRTVVNKPIKFVGTGEKLEAIDQF 284


>gi|54287932|gb|AAV31413.1| putative signal recognition particle protein [Toxoptera citricida]
          Length = 449

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 160/304 (52%), Gaps = 19/304 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L + + +II+  RL +D +++   E+   L+ +D+ ++V +K +  +  K+ A
Sbjct: 2   FSSLAERLSKSLRNIINKGRLTEDNIKDTIREVRKALLEADVTLSVVKKFI--INVKKKA 59

Query: 77  KDVSVQRVLYDVSELI----HKMLMPLSKPFN-WDFSHRP-HVILVVGVNGVGKTTVIGK 130
               + +      E I    +++++ +    N  + S +P  +IL++G+ G GKTT + K
Sbjct: 60  IGHEINKSFTPGQEFIKIVRNELILSMGDQDNDLNLSTQPPAIILIIGLQGAGKTTTVAK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++K + +    K+++ + D +R+AAI QL+I + + + +F  S I      +  EA + A
Sbjct: 120 IAKWIQNKYKKKILITSTDVYRAAAIKQLEILSSQININFYLSNINQKPINITKEAIQHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  D+L+IDTAGRLH +  +M  I ++       +   P   L V+D+  GQ+A+   
Sbjct: 180 KLKFYDILLIDTAGRLHIDEKMMNEIQEI------QNFSNPIETLLVVDSMMGQDAINMA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     +G+I+TK D  +R G  + +       + F+G GE I +LE F  +  +  
Sbjct: 234 TNFNKYLSISGIILTKTDSDSRSGIALSMRYITGKSIKFIGTGEKITNLEIFHPERMADK 293

Query: 310 ITGC 313
           I G 
Sbjct: 294 ILGM 297


>gi|322693736|gb|EFY85586.1| signal sequence receptor alpha subunit [Metarhizium acridum CQMa
           102]
          Length = 654

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 140/289 (48%), Gaps = 40/289 (13%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSK-- 101
           +E+ L+R ++    A ++ E    EL+  R     S+  ++   +   + KML P S   
Sbjct: 363 MEEHLLRKNVAREAAVRLCEGVEKELVGVRTGNFESINTKIQTAMESSLTKMLTPTSSLD 422

Query: 102 -----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
                      P       RP+VI +VGVNGVGK+T + K+   +     KV++AAGDTF
Sbjct: 423 LLREIDSITAPPATSLRKARPYVISIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTF 482

Query: 151 RSAAIDQLKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           RS A++QL +   R   +    E           G DAA +A +A   A  +  DV++ID
Sbjct: 483 RSGAVEQLAVHV-RNLKELTAREGGRVELYQKGYGKDAATVAKDAVSHAAQEGFDVVLID 541

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT- 259
           TAGR HN+  LM+ + K  +  +      P  +L V +A  G +++ Q   F+A  G+  
Sbjct: 542 TAGRRHNDQRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGSVR 595

Query: 260 ---GLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
              G I++K D      G L+ +V    +PV F+GVG+  +DL  F  K
Sbjct: 596 TLDGFIISKCDTVGDMVGTLVSLVHATNVPVLFVGVGQHYSDLRNFSVK 644


>gi|146087779|ref|XP_001465902.1| signal recognition particle [Leishmania infantum JPCM5]
 gi|134070003|emb|CAM68333.1| putative signal recognition particle [Leishmania infantum JPCM5]
 gi|322499389|emb|CBZ34462.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 519

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 15/284 (5%)

Query: 42  DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLTKRYAKDVSVQRVLYD-VSELIH 93
           +D V+E   E+   L+++D+ V + +K    I  EL        ++ +++L + V   + 
Sbjct: 25  EDDVKELMNEIARALLQADVNVTIVKKLQVSIKTELALAEEGAGLNKRKILQNAVFNGLK 84

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           ++L P  KPF      + +V++ VG+ G GKTT   K +      G K  L   DTFR+ 
Sbjct: 85  RILDPGVKPF-IPVKGKQNVVMFVGLQGSGKTTSCTKYAVYFQRKGFKTALVCADTFRAG 143

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQL+  A +    F  S   +D  A+A E   + + +K D++I+DT+GR    S L  
Sbjct: 144 AYDQLRQNATKAKVRFYGSLTEADPVAIAKEGVAELKKEKYDLIIVDTSGRHKQESALFE 203

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++   +K      P+ ++ V+ AT GQ    Q   F  +     +I+TK+D   +GG
Sbjct: 204 EMKQVEEAVK------PNDIVFVMSATDGQAVEEQARNFKEMVAVGSVIVTKLDCQTKGG 257

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           G +  V   + P+ F+G GE   D + F  + F   + G  D G
Sbjct: 258 GALSAVAATRSPIVFIGTGEHFEDFDLFNPERFVQKMLGMGDIG 301


>gi|62899020|ref|NP_446323.1| signal recognition particle 54 kDa protein [Rattus norvegicus]
 gi|73621950|sp|Q6AYB5|SRP54_RAT RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|50925703|gb|AAH79117.1| Signal recognition particle 54a [Rattus norvegicus]
          Length = 504

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAIQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|91079686|ref|XP_967889.1| PREDICTED: similar to AGAP004610-PA [Tribolium castaneum]
 gi|270003347|gb|EEZ99794.1| hypothetical protein TcasGA2_TC002574 [Tribolium castaneum]
          Length = 508

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 138/279 (49%), Gaps = 14/279 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYDV--SELIHKML 96
           +G+ +E+   L+ +D+ + + +K+ E +         A  ++ +R++      EL+ K++
Sbjct: 29  NGMLKEICAALLEADVNIRLVKKLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELV-KLV 87

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P  KP+      +P+VI+ VG+ G GKTT   KL+        K  L   DTFR+ A D
Sbjct: 88  DPGVKPYQ-PVKGKPNVIMFVGLQGSGKTTTCTKLAYHYQKKNWKSCLVCADTFRAGAYD 146

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           Q+K    +    F  S    D   +A +     + +  +++I+DT+GR      L     
Sbjct: 147 QVKQNCTKARIPFYGSYTEVDPVVIAQDGVDMFKKEGFEIIIVDTSGRHKQEESLFE--- 203

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           +M+ V   + P    +++ V+DAT GQ    Q + F        +I+TK+DG A+GGG +
Sbjct: 204 EMLAVSNAIQPD---NIIFVMDATIGQACEAQAKAFKEKVDVGSVIITKLDGHAKGGGAL 260

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             V     P+ ++G GE I+DLEPF  K F + + G  D
Sbjct: 261 SAVAATNSPIIYIGTGEHIDDLEPFKTKPFVSKLLGMGD 299


>gi|330996193|ref|ZP_08320083.1| signal recognition particle protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329573697|gb|EGG55288.1| signal recognition particle protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 451

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 140/279 (50%), Gaps = 13/279 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRRALLDADVNYKVAKTFTDTVKQKALGQNVLTAVKPSQLMVKIVHDELATL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAID 156
              +    +    P VIL+ G+NG GKTT+ GKL+  +     K  +LAA D +R AAI+
Sbjct: 86  MGGETAELNLQGHPSVILMAGLNGAGKTTLSGKLALMLKSKKRKNPLLAACDIYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK+  ++            DA  +A  A K+A+AK  DV+I+DTAGRL  +  +M  I 
Sbjct: 146 QLKVLGEQIGIPVYSEPDNKDAVQIAQNAVKEAKAKGYDVVIVDTAGRLAVDEQMMQEIA 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +   +       P   L V+DA TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 206 AIKHGIN------PDETLFVVDAMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I      P+ F+G GE +  ++ F     +  I G  D
Sbjct: 260 SIRTVVNKPIKFVGTGEKMEAIDQFHPSRMADRILGMGD 298


>gi|325675945|ref|ZP_08155628.1| signal recognition particle protein [Rhodococcus equi ATCC 33707]
 gi|325553183|gb|EGD22862.1| signal recognition particle protein [Rhodococcus equi ATCC 33707]
          Length = 526

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 151/318 (47%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL     D    E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FESLSDRLTGALKDLRGKGRLSGADIDATCREIRLALLEADVALPVVRTFIAKIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKIVNEELVGILGGETRRLQFAKTP-PTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177
           +K + D G   +L A D  R  A+ QL+I  +R  A       G+              D
Sbjct: 121 AKWLKDQGHTPLLVACDLQRPGAVSQLQIVGERAGAAVFAPHPGTSIGGGENPLGISAAD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A+ K+ DV+I+DTAGRL  +  LMA     IR     D   P   + VL
Sbjct: 181 PVEVARAGVEEARNKQYDVVIVDTAGRLGIDEELMAQAAG-IR-----DAVQPDETIFVL 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F +  G TG+++TK+DG ARGG  + +      P+ F   GE + D
Sbjct: 235 DAMIGQDAVHTAEAFKSGVGFTGVVLTKLDGDARGGAALSVREVTGEPILFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     ++ I G  D
Sbjct: 295 FDVFHPDRMASRILGMGD 312


>gi|65321173|ref|ZP_00394132.1| COG0541: Signal recognition particle GTPase [Bacillus anthracis
           str. A2012]
          Length = 464

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAG LH +  LM  + K+  V K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGHLHIDEELMDELAKVKEVAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LE F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300


>gi|118487996|gb|ABK95819.1| unknown [Populus trichocarpa]
          Length = 495

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 142/290 (48%), Gaps = 19/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86
           II  + L+D + E +   L++SD+   +        +KIV  + L   + K   +Q+ ++
Sbjct: 22  IIDEKALNDCLNE-ITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           +  EL  K+L P    F      +  V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  N--ELC-KILDPGKSSFTPK-KGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ A DQLK  A +    F  S   SD   +A E  +  + +  D++I+DT+GR  
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAEEGVETFKKENCDLIIVDTSGRHK 196

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
             + L+  + ++    K      P  ++ V+D++ GQ    Q + F  +     +I+TKM
Sbjct: 197 QEAALLEEMRQVSEATK------PDLIIFVMDSSIGQAPFDQAQAFKQMVAVGAVIITKM 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           DG A+GGG +  V   K PV F+G GE +++ E F  K F + + G  D+
Sbjct: 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 300


>gi|26988194|ref|NP_743619.1| signal recognition particle protein [Pseudomonas putida KT2440]
 gi|24982931|gb|AAN67083.1|AE016337_6 signal recognition particle protein Ffh [Pseudomonas putida KT2440]
          Length = 538

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 156/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 82  FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSV--KDRA 139

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D +     P V+L+ G+ G GKTT  GK
Sbjct: 140 VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLALNAAPPAVVLMAGLQGAGKTTTAGK 199

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I     A+A  A ++A
Sbjct: 200 LARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREA 259

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K +DV+I+DTAGRLH ++ +M  I  +   +K      P   L V+DA TGQ+A    
Sbjct: 260 KLKFIDVVIVDTAGRLHIDADMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTA 313

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ 
Sbjct: 314 KAFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASR 373

Query: 310 ITGCLD 315
           I G  D
Sbjct: 374 ILGMGD 379


>gi|227823738|ref|YP_002827711.1| signal recognition particle protein [Sinorhizobium fredii NGR234]
 gi|227342740|gb|ACP26958.1| signal recognition particle protein [Sinorhizobium fredii NGR234]
          Length = 518

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 144/274 (52%), Gaps = 13/274 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPL--SKPF 103
           E+   L+ +D+ + V +   E++  K    ++  S++     V +++H  L+ +  S+  
Sbjct: 33  EVRRALLEADVALDVVRSFTEKVREKAVGAEILKSIKPGQM-VVKIVHDELIAMLGSEGV 91

Query: 104 NWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIW 161
             D  +  P V+++VG+ G GKTT  GK++K+++    K V++A+ DT R AA +QL+  
Sbjct: 92  TIDLNAPAPVVVMMVGLQGSGKTTTTGKIAKRLTTRDKKKVLMASLDTRRPAAQEQLRQL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +T  D +    G     +A  A + A+    D++I+DTAGR H +  LM  + ++ R 
Sbjct: 152 GVQTGVDTLPVIAGQSPTDIAARAVQAAKLGGHDIVILDTAGRTHIDEPLMIEMAEIKR- 210

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                   PH +L V DA TGQ+A+     F    G TGL++T+MDG  RGG  + +   
Sbjct: 211 -----KSNPHEILLVADALTGQDAVNLARNFDDRVGITGLVLTRMDGDGRGGAALSMRAV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+  +GVGE +++LE F  +  +  I G  D
Sbjct: 266 TGKPIKLIGVGEKMDELEEFHPRRVADRILGMGD 299


>gi|94988647|ref|YP_596748.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS9429]
 gi|94992471|ref|YP_600570.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS2096]
 gi|94542155|gb|ABF32204.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS9429]
 gi|94545979|gb|ABF36026.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS2096]
          Length = 522

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 160/312 (51%), Gaps = 23/312 (7%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72
           +T  F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  
Sbjct: 1   MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +    ++       Q++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT
Sbjct: 61  RAIGHEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTT 118

Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183
             GKL+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  
Sbjct: 119 FAGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVR 176

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  +QA+  + D ++IDTAGRL  +  LM    + +R +K L    P  +L V+D+  GQ
Sbjct: 177 KGLEQARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPDEILLVVDSMIGQ 230

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            A      F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F  
Sbjct: 231 EAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHP 290

Query: 304 KDFSAVITGCLD 315
              S+ I G  D
Sbjct: 291 DRMSSRILGMGD 302


>gi|291546242|emb|CBL19350.1| signal recognition particle protein [Ruminococcus sp. SR1/5]
          Length = 450

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 116/203 (57%), Gaps = 6/203 (2%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V+++VG+ G GKTT + KL+ K+   G + +L A D +R AAI QL++  ++   +    
Sbjct: 104 VLMMVGLQGAGKTTTVAKLAGKLKSKGKRPLLVACDVYRPAAITQLQVNGEKQGVEVFSM 163

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               +   +A  A + A++ + +V++IDTAGRLH +  +M  +  +     + + +   +
Sbjct: 164 GDKQNPVDIAKAAIEHAKSNQQNVVLIDTAGRLHIDEDMMQELEDI-----KANVNVDAT 218

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL V+DA TGQ+A+   + F    G  G+I+TKMDG  RGG  + I      P++++G+G
Sbjct: 219 VL-VVDAMTGQDAVNVAQNFSDKVGIDGVILTKMDGDTRGGAALSIKAVTGKPIFYVGMG 277

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E ++DLE F  +  ++ I G  D
Sbjct: 278 EKLSDLEQFYPERMASRILGMGD 300


>gi|293189830|ref|ZP_06608544.1| signal recognition particle protein [Actinomyces odontolyticus
           F0309]
 gi|292821245|gb|EFF80190.1| signal recognition particle protein [Actinomyces odontolyticus
           F0309]
          Length = 527

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 137/274 (50%), Gaps = 18/274 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           LI +D+ + V ++   ++  K Y    S      Q+V+  V E + ++L   ++   +  
Sbjct: 38  LIDADVALPVVRQFTTQVREKAYGAARSKALNPGQQVVSIVHEELVEILGGATRELTFAE 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V ++ G+ G GKTT+ GKL K + + G  V+L A D  R  A+ QL++  +R   
Sbjct: 98  SG-PTVFMLAGLQGAGKTTLAGKLGKWLREEGKTVLLVASDLQRPNAVQQLQVVGERAGV 156

Query: 168 DFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                E G+   D   +A    + A+   ++V+I+DTAGRL  +  +M       + +  
Sbjct: 157 KVWAPEPGNGVGDPVEVARSGVEFARQSGINVVIVDTAGRLGVDQEMME------QAIAI 210

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            D   PH ++ VLDA  GQ+A+     F    G TG++++K+DG ARGG  + +      
Sbjct: 211 RDAVNPHEIMFVLDAMVGQDAVSTSTAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGA 270

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           P+ F   GEG++D E F A   +  I   LD G+
Sbjct: 271 PILFASTGEGLDDFERFHADRMAGRI---LDMGD 301


>gi|323359703|ref|YP_004226099.1| signal recognition particle GTPase [Microbacterium testaceum
           StLB037]
 gi|323276074|dbj|BAJ76219.1| signal recognition particle GTPase [Microbacterium testaceum
           StLB037]
          Length = 514

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 154/310 (49%), Gaps = 22/310 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L E   ++    +L     DG   E+   L+ +D+ + V ++    +  +   
Sbjct: 4   FGTLSDRLTETFRNLRKKGQLTPADVDGTVREIRRALLDADVALPVVKEFTAAVRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q+V+  V++ +  +L    +   +   + P VI++ G+ G GKTT  GKL
Sbjct: 64  DEVNRALNPAQQVVQIVNDELIGILGGKQRRLQF-AKNPPTVIMLAGLQGSGKTTFAGKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +K +   G   +L A D  R  A++QL++ A+R  A     E G+   D   +A +    
Sbjct: 123 AKMLEKDGHTPLLVACDLQRPNAVNQLQVVAERAGAAIYAPEPGNGVGDPVKVARDGVAY 182

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A  ++ D++IIDTAGRL  ++ LM      IR   +     P  VL V+DA  GQ+A+  
Sbjct: 183 ATRQQHDIVIIDTAGRLGVDAELMKQAAD-IRTATQ-----PDEVLFVIDAMIGQDAVNT 236

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG++++K+DG ARGG  + +      P+ F   GEG++D+EPF     ++
Sbjct: 237 AKAFQDGVDFTGVVLSKLDGDARGGAALSVASVTGRPIIFASTGEGLDDVEPFHPDRMAS 296

Query: 309 VITGCLDYGE 318
            I   LD G+
Sbjct: 297 RI---LDLGD 303


>gi|46128914|ref|XP_388961.1| hypothetical protein FG08785.1 [Gibberella zeae PH-1]
          Length = 659

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 140/281 (49%), Gaps = 31/281 (11%)

Query: 40  RLDDGVREELEDLLIRSDIGV-AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           RL +GV +EL  +   S   + A  Q  +E  LTK      S+  +L ++  +    +  
Sbjct: 384 RLCEGVEKELVGVKTGSFESINARIQAAMEASLTKMLTPTSSLD-LLREIDAITAPSVTS 442

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           L KP       RP+V+ +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++QL
Sbjct: 443 LRKP-------RPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQL 495

Query: 159 KIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +   R   +    E           G DAA +A +A   A  +  DV++IDTAGR HN+
Sbjct: 496 AVHV-RNLKELTAREGGRVELYQKGYGKDAATVAKDAVSHAAQEGYDVVLIDTAGRRHND 554

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT----GLIMT 264
             LM+ + K  +  +      P  +L V +A  G +++ Q   F+A  G      G I++
Sbjct: 555 QRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGAVRTLDGFIIS 608

Query: 265 KMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           K D      G L+ +V    +PV F+GVG+  +DL  F  K
Sbjct: 609 KCDTVGDMVGTLVSLVHATNVPVLFVGVGQHYSDLRNFSVK 649


>gi|325297211|ref|YP_004257128.1| signal recognition particle protein [Bacteroides salanitronis DSM
           18170]
 gi|324316764|gb|ADY34655.1| signal recognition particle protein [Bacteroides salanitronis DSM
           18170]
          Length = 441

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 134/265 (50%), Gaps = 13/265 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRRALLDADVNYKVAKNFTDTVKEKAMGQNVLTAVKPSQLMVKIVHDELAKL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
                   D   RP VIL+ G+ G GKTT  GKL++   +    K +L A D +R AAI+
Sbjct: 86  MGGDTIELDLKGRPAVILMSGLQGSGKTTFSGKLARMFKTKKNRKPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK+   +            D   +A  A ++A+AK  D++I+DTAGRL  +  +M  I 
Sbjct: 146 QLKVLGTQVEVPVYSEPESKDPVQIAKNAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIE 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +   +       P + L V+DA TGQ+A+     F+     TG+++TK+DG  RGG  +
Sbjct: 206 TIKNAI------TPDATLFVVDAMTGQDAVNTAREFNERLDFTGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I      P+ F+G GE ++ ++ F
Sbjct: 260 SIRTVVNKPILFVGTGEKLDAVDLF 284


>gi|111023492|ref|YP_706464.1| signal recognition particle protein [Rhodococcus jostii RHA1]
 gi|110823022|gb|ABG98306.1| signal recognition particle protein [Rhodococcus jostii RHA1]
          Length = 528

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 153/320 (47%), Gaps = 34/320 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL     D    E+   L+ +D+ + V +  + ++  K  A
Sbjct: 2   FESLSDRLTGALKDLRGKGRLSGADIDATCREIRLALLEADVALPVVRSFIAKI--KERA 59

Query: 77  KDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           K V V       Q+V+  V+E + ++L   ++   +  +  P VI++ G+ G GKTT+ G
Sbjct: 60  KGVEVSAALNPAQQVVKIVNEELVEILGGETRRLAFAKTP-PTVIMLAGLQGSGKTTLAG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS------------- 176
           KL+K + D G   +L A D  R  A+ QL+I  +R  A       G+             
Sbjct: 119 KLAKWLRDQGHTPLLVACDLQRPGAVTQLQIVGERAGATVFAPHPGTSIGGGDNELGVTA 178

Query: 177 -DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D   +A    ++A+ K+ DV+I+DTAGRL  ++ LMA     IR     D   P   + 
Sbjct: 179 ADPVEVARAGVEEARNKQFDVVIVDTAGRLGIDADLMAQAAG-IR-----DAVNPDETIF 232

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDA  GQ+A+   E F    G TG+++TK+DG ARGG  + +      P+ F   GE +
Sbjct: 233 VLDAMIGQDAVSTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFASTGEKL 292

Query: 296 NDLEPFVAKDFSAVITGCLD 315
            D + F     ++ I G  D
Sbjct: 293 EDFDVFHPDRMASRILGMGD 312


>gi|257075577|ref|ZP_05569938.1| signal recognition particle protein Srp54 [Ferroplasma acidarmanus
           fer1]
          Length = 457

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 144/279 (51%), Gaps = 24/279 (8%)

Query: 45  VREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQ----RVLYDVSELIHKML 96
           V +E++  L+++D+ V +  K+     E  L ++    ++ Q    RV+Y+      ++L
Sbjct: 31  VTKEIQRALLKADVNVKLVLKLTNTVQERALNEKPPAGMTAQDYIIRVIYE------ELL 84

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             L    N+D   +P  I++VG+ G GKTT  GKL++     GL   L A D  R  A +
Sbjct: 85  KILGTDSNFDL--KPQTIMLVGLYGNGKTTTAGKLARLFMKKGLSTGLIAADVHRPGAFE 142

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL+  +   +  F   +   +A  +     K+ +  K+   IIDT+GR   +S+    I 
Sbjct: 143 QLQQISGDVNCGFYGEKEEKNALKIVRNGIKELEDFKIK--IIDTSGR---DSLDQELID 197

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           ++  + ++++P    +VL V+DAT GQ A  Q +  H      G+I+TKMDGT + GG +
Sbjct: 198 EVHEIKEKINPD---TVLFVIDATLGQQAGPQAKTLHDAVNIDGVIITKMDGTGKAGGAL 254

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             V   + PVYF+G GE ++D++ F  K F + + G  D
Sbjct: 255 SAVADIQSPVYFIGTGEHMDDIQIFNPKKFLSRLLGMGD 293


>gi|311030155|ref|ZP_07708245.1| signal recognition particle protein [Bacillus sp. m3-13]
          Length = 448

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 112/209 (53%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S  P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    + S
Sbjct: 98  SRPPTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQLS 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +A +A ++A+ +  D ++IDTAGRLH +  LM  + ++  +     
Sbjct: 158 MPVFSLGDQVSPVEIAKQAIQKAKDEHHDYVLIDTAGRLHVDENLMDELKQVKEI----- 212

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  +  V+DA TGQ+A+   + F+   G TG+++TK+DG  RGG  + +      P+
Sbjct: 213 -SNPDEIFLVVDAMTGQDAVNVAQSFNEQLGLTGVVLTKLDGDTRGGAALSVKAVTNTPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            ++G+GE ++ +EPF  +  ++ I G  D
Sbjct: 272 KYIGMGEKLDAIEPFHPERMASRILGMGD 300


>gi|308159913|gb|EFO62429.1| Signal recognition particle receptor [Giardia lamblia P15]
          Length = 571

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 104/197 (52%), Gaps = 14/197 (7%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+VI + GVNGVGKTT I KL     + GL+ ++ A D+FRS A++QL+   +R  A  
Sbjct: 366 RPYVICMTGVNGVGKTTSIAKLLYIFKNNGLRSLVCACDSFRSGAVEQLQEHCNRLGATL 425

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                G +A+A+A    K+A++   D+ +IDT GR +NN  LM  +G ++        + 
Sbjct: 426 YSQGYGKNASAIAKYGIKEAESLNYDICLIDTTGRQYNNGPLMQALGALVL------ENT 479

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAV-------AGTTGLIMTKMDGTA-RGGGLIPIVVT 281
           P  VL V +A TG   + Q++ F           G  G+I+TK D    + G  + +   
Sbjct: 480 PDVVLFVGEALTGNEGIEQLKQFDCALKSYTNSRGIDGIILTKFDTCGDKVGAALNLCFV 539

Query: 282 HKIPVYFLGVGEGINDL 298
             +P+ ++G+G+   D 
Sbjct: 540 CDLPILYVGIGQSYPDF 556


>gi|298504758|gb|ADI83481.1| signal recognition particle protein [Geobacter sulfurreducens
           KN400]
          Length = 452

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 143/287 (49%), Gaps = 14/287 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS 89
           ++S   + + +RE +  +L+ +D+   V +  VE +  +     V       Q+V+  V 
Sbjct: 21  VMSEENIKEALRE-VRLVLLEADVNFKVVKDFVERVRVRAVGTQVLQSLTPGQQVIKIVQ 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +   LM   +  + D + +P V I++VG+ G GKTT  GKL++ +     + +L   D
Sbjct: 80  EELVA-LMGGGEDNSLDLAAKPPVSIMMVGLQGAGKTTSCGKLARLLKGQRRRPLLVPAD 138

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +R AAI+QLK    + S +   S    D   +  EA + A     DV+I+DTAGR   +
Sbjct: 139 VYRPAAIEQLKTLGRQLSVEVFDSRADQDPVDICREALRYATLNGFDVVILDTAGRHQID 198

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM    +++R+    +   P  +L V DA TGQ A+     F+     TG+++TK+DG
Sbjct: 199 EYLM---NELVRI---KEAAEPREILFVADAMTGQEAVNVASGFNDRLDITGVVLTKLDG 252

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            A+GG  + I      PV  +GVGE ++ LE F A    + I G  D
Sbjct: 253 DAKGGAALSIRAVTGKPVKLVGVGEKLDALEVFHADRLVSRILGMGD 299


>gi|197303265|ref|ZP_03168306.1| hypothetical protein RUMLAC_01988 [Ruminococcus lactaris ATCC
           29176]
 gi|197297691|gb|EDY32250.1| hypothetical protein RUMLAC_01988 [Ruminococcus lactaris ATCC
           29176]
          Length = 451

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 151/304 (49%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++ S  RL +  V+  L ++   L+ +D+   V +  ++++  +   
Sbjct: 3   FDSLSEKLQNVFKNLRSKGRLTEADVKAALREVKMALLEADVNFKVVKGFIKDVQERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + +++   +            VI++ G+ G GKTT   KL
Sbjct: 63  QDVMNGLNPGQMVIKIVNEELIRLMGSETTEIKLQPGSAITVIMMAGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G K +L A D +R AAI QL+I  ++   +       +  A +A  A + A  
Sbjct: 123 AGKFKLKGKKPLLVACDVYRPAAIKQLEINGEKQGVEVFSMGNKNKPADIAKAAMEHAAK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+     
Sbjct: 183 NGNNIVILDTAGRLHIDEDMMAELQEIKEAV------TVHQTILVVDAMTGQDAVNVASS 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FNDKIGIDGVIVTKLDGDTRGGAALSIKAVTGRPILYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|67469473|ref|XP_650715.1| signal recognition particle protein SRP54 [Entamoeba histolytica
           HM-1:IMSS]
 gi|56467365|gb|EAL45328.1| signal recognition particle protein SRP54, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 487

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 141/275 (51%), Gaps = 14/275 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYD--VSELIHKMLMPLS 100
           +E+E  L+  D+     +++V  +  K  ++D+      ++++ D    ELI+ ++ P +
Sbjct: 33  KEIETSLLGEDVNPIFIRQMVNNIKKKINSEDIPDGIDKRKLIKDSVFEELIN-LVDPKT 91

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           + F      +  V+++VG+ G GKTT I KL+    + G K  +   DTFR+ A +QL++
Sbjct: 92  EAFKPK-KGKTCVLMMVGLQGAGKTTTITKLALYYKNRGYKPAVVGADTFRAGAYEQLQM 150

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A R    F   +  SD   +A E  +  + +K D++++DT+GR   +  L   +  +  
Sbjct: 151 NAKRAGVPFFGIKEESDPVKVASEGVRTFRKEKNDIILVDTSGRHKQDKELFKEMQSVRD 210

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
            +K      P S++ V+D   GQ A  Q + F        +I+TK+DG + GGG +  V 
Sbjct: 211 AIK------PDSIIFVMDGAIGQAAFGQAKAFKDAVEVGSVIITKLDGHSNGGGALSAVA 264

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             K P+ F+G GE +N++E F A+ F   + G  D
Sbjct: 265 ATKSPIIFIGTGEKVNEIEEFDAESFVRKLLGMGD 299


>gi|229140489|ref|ZP_04269044.1| Signal recognition particle protein [Bacillus cereus BDRD-ST26]
 gi|228643050|gb|EEK99326.1| Signal recognition particle protein [Bacillus cereus BDRD-ST26]
          Length = 305

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 105/194 (54%), Gaps = 11/194 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAGRLH +  LM  + K+  V K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPF 301
           F G+GE ++ LE F
Sbjct: 273 FAGMGEKLDALEAF 286


>gi|225714310|gb|ACO13001.1| Signal recognition particle 54 kDa protein [Lepeophtheirus
           salmonis]
          Length = 508

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 138/278 (49%), Gaps = 12/278 (4%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYDVSEL-IHKMLM 97
           +G+ +EL   L+ +D+ + +  K+ E +      +  A+ ++ ++++ +   L + K++ 
Sbjct: 29  NGMLKELCAALLEADVNIRLVAKLRENVRGVINFEEMAQGLNKRQIIKEAVYLELVKLVD 88

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P  +P+      + +V++ VG+ G GKTT   KL+      G K  L   DTFR+ A DQ
Sbjct: 89  PGVEPYTPK-KGKSNVVMFVGLQGSGKTTTCTKLAWYYQKKGWKACLVCADTFRAGAYDQ 147

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LK  A +    F  S    D   +A E     + +  +++I+DT+GR +    L     +
Sbjct: 148 LKQNATKARIPFYGSYTEPDPVVIANEGVNMFKEEGFEIIIVDTSGRHYQEDALFE---E 204

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           M+ V   ++P    +++ V+DA+ GQ    Q   F        +I +K+D  A+GGG + 
Sbjct: 205 MLAVSNAVNPD---NIIFVMDASIGQACEAQARAFKEKVDVGSVITSKLDSHAKGGGALS 261

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            V   K PV F+G GE I+D EPF  K F   + G  D
Sbjct: 262 AVAATKSPVVFIGTGEHIDDFEPFKTKPFVQKLLGMGD 299


>gi|30263848|ref|NP_846225.1| signal recognition particle protein [Bacillus anthracis str. Ames]
 gi|47529273|ref|YP_020622.1| signal recognition particle protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186695|ref|YP_029947.1| signal recognition particle protein [Bacillus anthracis str.
           Sterne]
 gi|227813247|ref|YP_002813256.1| signal recognition particle protein [Bacillus anthracis str. CDC
           684]
 gi|229602210|ref|YP_002868082.1| signal recognition particle protein [Bacillus anthracis str. A0248]
 gi|254683447|ref|ZP_05147307.1| signal recognition particle protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721376|ref|ZP_05183165.1| signal recognition particle protein [Bacillus anthracis str. A1055]
 gi|254735883|ref|ZP_05193589.1| signal recognition particle protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739516|ref|ZP_05197213.1| signal recognition particle protein [Bacillus anthracis str. Kruger
           B]
 gi|254751176|ref|ZP_05203215.1| signal recognition particle protein [Bacillus anthracis str.
           Vollum]
 gi|254756724|ref|ZP_05208753.1| signal recognition particle protein [Bacillus anthracis str.
           Australia 94]
 gi|30258492|gb|AAP27711.1| signal recognition particle protein [Bacillus anthracis str. Ames]
 gi|47504421|gb|AAT33097.1| signal recognition particle protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180622|gb|AAT55998.1| signal recognition particle protein [Bacillus anthracis str.
           Sterne]
 gi|227003495|gb|ACP13238.1| signal recognition particle protein [Bacillus anthracis str. CDC
           684]
 gi|229266618|gb|ACQ48255.1| signal recognition particle protein [Bacillus anthracis str. A0248]
          Length = 449

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAG LH +  LM  + K+  V K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGHLHIDEELMDELAKVKEVAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LE F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300


>gi|86149828|ref|ZP_01068057.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597147|ref|ZP_01100383.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562348|ref|YP_002344127.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839646|gb|EAQ56906.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190836|gb|EAQ94809.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360054|emb|CAL34846.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315926824|gb|EFV06198.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929637|gb|EFV08818.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 445

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 142/271 (52%), Gaps = 15/271 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLT--KRYAKD--VSVQRVLYDVSELIHKMLMPLSKP 102
           E L+  L+++D    V  K+ +ELLT  +  AK   +  ++ L  +   +  +L    K 
Sbjct: 30  ETLKKALLKAD----VHHKVTKELLTLIEEDAKQNGIGQKQFLNAIKINLENILSVNGKN 85

Query: 103 FNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
             + F+ +P  V+L+ G+ G GKTT   KL+  +     KV++AA D  R AA++QL+  
Sbjct: 86  QGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQL 145

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            +    +    E   D   +A EA K+A++  VDVL++DTAGRL  +  LM      +R 
Sbjct: 146 CEANEIELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALM----DELRA 201

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +K  D   P  +  V DA +GQ+ ++    F+ V G +G+I++K D   +GG  + I   
Sbjct: 202 VK--DVLNPDEIFYVADAMSGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQ 259

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             IP+ F+GVGE + DLE F+     + I G
Sbjct: 260 IGIPLRFIGVGEKVADLEVFIPDRIVSRIMG 290


>gi|148985187|ref|ZP_01818426.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922632|gb|EDK73750.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800200|emb|CBW32808.1| signal recognition particle protein [Streptococcus pneumoniae
           OXC141]
          Length = 523

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 113/208 (54%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM  + + ++VL +   
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLMNEL-RDVKVLAQ--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|28197993|ref|NP_778307.1| signal recognition particle protein [Xylella fastidiosa Temecula1]
 gi|182680619|ref|YP_001828779.1| signal recognition particle protein [Xylella fastidiosa M23]
 gi|28056053|gb|AAO27956.1| signal recognition particle protein [Xylella fastidiosa Temecula1]
 gi|182630729|gb|ACB91505.1| signal recognition particle protein [Xylella fastidiosa M23]
 gi|307579077|gb|ADN63046.1| signal recognition particle protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 455

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 152/291 (52%), Gaps = 17/291 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   I  +    RL ++ +RE   E+   L+ +D+ ++V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALSVVQALIERIKIRALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P VIL+ G+ G GKT+++GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELAAVMGDSASELNLNVPA-PAVILLAGLQGAGKTSMVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QL+I +++ +     S +  +   +   A   A+
Sbjct: 121 AKYLKEKRKKKVMVVSADVYRPAAIEQLRILSEQVNVLCFPSSVEQNPVDIVRAAIADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  +  +M  I  +       D   P   L V+D+ TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDQGMMDEIKAL------HDTLVPVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            F      TGLI+TK DG ARGGG + +      P+ F+G GE ++DL+ F
Sbjct: 235 AFSEALPLTGLILTKTDGDARGGGALSVRYITGRPIKFVGTGEKVDDLDVF 285


>gi|226305929|ref|YP_002765889.1| signal recognition particle protein [Rhodococcus erythropolis PR4]
 gi|229491376|ref|ZP_04385200.1| signal recognition particle protein [Rhodococcus erythropolis
           SK121]
 gi|226185046|dbj|BAH33150.1| signal recognition particle protein [Rhodococcus erythropolis PR4]
 gi|229321661|gb|EEN87458.1| signal recognition particle protein [Rhodococcus erythropolis
           SK121]
          Length = 525

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 151/318 (47%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL     D    E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FESLSDRLTGSLKDLRGKGRLSGADIDATAREIRLALLEADVALPVVRSFIAKIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++   +  +  P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELVEVLGGETRRLQFAKTP-PTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177
           +K + D G   +L A D  R  A+ QL+I  +R  A       G+              D
Sbjct: 121 AKWLKDQGHTPLLVACDLQRPGAVTQLQIVGERAGAAVFAPHPGTSIGGGENALGVSAAD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A+ K  DV+I+DTAGRL  +S LMA     IR     D   P   + VL
Sbjct: 181 PVEVARAGVEEARNKHYDVVIVDTAGRLGIDSELMAQAAG-IR-----DAVNPDETIFVL 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   + F    G TG+++TK+DG ARGG  + +      P+ F   GE + D
Sbjct: 235 DAMIGQDAVSTADAFREGVGITGVVLTKLDGDARGGAALSVREVTGQPILFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     ++ I G  D
Sbjct: 295 FDVFHPDRMASRILGMGD 312


>gi|172057910|ref|YP_001814370.1| signal recognition particle protein [Exiguobacterium sibiricum
           255-15]
 gi|171990431|gb|ACB61353.1| signal recognition particle protein [Exiguobacterium sibiricum
           255-15]
          Length = 450

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 135/270 (50%), Gaps = 15/270 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V ++ V ++  +   +DV       Q+V+  V + + K++     P     
Sbjct: 39  LLEADVNFKVVKQFVNDVKERAVGQDVMTSLTPGQQVVKIVHDELTKLMGSEVSPLT--L 96

Query: 108 SHRPH-VILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           S+RP  VI++ G+ G GKTT +GKL+  +        +L A D +R AAI QL+    + 
Sbjct: 97  SNRPPTVIMMTGLQGAGKTTTVGKLANHLRKKQNRSPLLVAADIYRPAAIKQLETLGKQL 156

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                          +   A   A+    D+++IDTAGRLH +  LM  +  +  + K  
Sbjct: 157 ELPVFSMGDQVSPQEIVTNALDYAKEHHHDIVLIDTAGRLHIDEDLMQELVDVKEIAK-- 214

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P+ +  V+D+ TGQ+A+   + F+   G TG+++TK+DG  RGG  + I      P
Sbjct: 215 ----PNEIFLVVDSMTGQDAVNVAQSFNEKLGVTGVVLTKLDGDTRGGAALSIKAVTGAP 270

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G+GE ++ +EPF  +  ++ I G  D
Sbjct: 271 IKFVGLGEKLDAIEPFYPERMASRILGMGD 300


>gi|148994098|ref|ZP_01823438.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489114|ref|ZP_02713313.1| signal recognition particle protein [Streptococcus pneumoniae
           SP195]
 gi|147927451|gb|EDK78480.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572579|gb|EDT93107.1| signal recognition particle protein [Streptococcus pneumoniae
           SP195]
          Length = 523

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVCHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|3334340|sp|O15821|SRP54_ENTHI RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|17980209|gb|AAL50553.1| signal recognition particle 54 kDa subunit SRP54 [Entamoeba
           histolytica]
          Length = 487

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 141/275 (51%), Gaps = 14/275 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYD--VSELIHKMLMPLS 100
           +E+E  L+  D+     +++V  +  K  ++D+      ++++ D    ELI+ ++ P +
Sbjct: 33  KEIETSLLGEDVNPIFIRQMVNNIKKKINSEDIPDGIDKRKLIKDSVFEELIN-LVDPKT 91

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           + F      +  V+++VG+ G GKTT I KL+    + G K  +   DTFR+ A +QL++
Sbjct: 92  EAFKPK-KGKTCVLMMVGLQGAGKTTTITKLALYYKNRGYKPAVVGADTFRAGAYEQLQM 150

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A R    F   +  SD   +A E  +  + +K D++++DT+GR   +  L   +  +  
Sbjct: 151 NAKRAGVPFFGIKEESDPVKVASEGVRTFRKEKNDIILVDTSGRHKQDKELFKEMQSVRD 210

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
            +K      P S++ V+D   GQ A  Q + F        +I+TK+DG + GGG +  V 
Sbjct: 211 AIK------PDSIIFVMDGAIGQAAFGQAKAFKDAVEVGSVIITKLDGHSNGGGALSAVA 264

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             K P+ F+G GE +N++E F A+ F   + G  D
Sbjct: 265 ATKSPIIFIGTGEKVNEIEEFDAESFVRQLLGMGD 299


>gi|256384407|gb|ACU78977.1| signal recognition particle protein [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|256385239|gb|ACU79808.1| signal recognition particle protein [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|296455407|gb|ADH21642.1| signal recognition particle protein [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 447

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 148/283 (52%), Gaps = 18/283 (6%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           ++ ++E L+++   L+ +D+ +  A++I+  +  K     +S      Q+++  V E + 
Sbjct: 26  EENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELV 85

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRS 152
            +L   + P   D + +P V+++VG+ G GKTT   KL+  ++    K +L  G D +R 
Sbjct: 86  NILGKENAPL--DINKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRP 143

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI+QL     +T+   V  +   D    A +A + A+    DV+I+DTAGRL  +  LM
Sbjct: 144 GAIEQLVQLGQKTNTQ-VFEKGKQDPVKTAEQALQYAKENNFDVVILDTAGRLQVDQFLM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
               K +  LK+    +P+ +L V+D  +GQ  +     F++    +G+++TK+DG ARG
Sbjct: 203 ----KELDNLKK--KTSPNEILLVVDGMSGQEIINVTNEFNSKLKLSGVVVTKLDGDARG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + I    K+P+ F+G GEG N L  F  K  +  + G  D
Sbjct: 257 GATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGD 299


>gi|134095939|ref|YP_001101014.1| GTP-binding signal recognition particle protein [Herminiimonas
           arsenicoxydans]
          Length = 396

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 118/222 (53%), Gaps = 11/222 (4%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           VQR   +++ ++   L P +   N+  +  P +IL+ G+ G GKTT +GKL+K + +   
Sbjct: 19  VQR---ELAAIMGADLGPEASQLNF-ATQPPAIILMAGLQGAGKTTTVGKLAKYLREQKK 74

Query: 141 K-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
           K V+  + D +R AAI QLK   ++  ADF  SEI      +A  A   A+    DVLII
Sbjct: 75  KKVLTVSADVYRPAAIGQLKTVTEQVGADFFPSEITDKPVDIALAALDYAKRHYHDVLII 134

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL  +  +M  I  +   +K      P   L V+DA  GQ+A+   + F      T
Sbjct: 135 DTAGRLGIDEAMMQEISAIHAAVK------PIETLFVVDAMLGQDAINTAKAFSDALPLT 188

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G+++TK+DG +RGG  + +      P+ F GV E ++ LE F
Sbjct: 189 GIVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAF 230


>gi|54020010|ref|YP_115574.1| signal recognition particle protein [Mycoplasma hyopneumoniae 232]
 gi|53987183|gb|AAV27384.1| signal recognition particle protein [Mycoplasma hyopneumoniae 232]
          Length = 440

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 155/322 (48%), Gaps = 34/322 (10%)

Query: 17  LTKGFASTSLKLKEGIT----DIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           LT    S+  KL++ +T    D++  +R +   + E   +LL+  D    V  +++++ L
Sbjct: 5   LTNRIQSSLKKLQKSLTINESDLVEITREIRLALLEADVNLLVVKDFISKVKTQVLKQGL 64

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           T +        ++L       H+ L+ +    SK  N  F+  P +I++VG+ G GKTT 
Sbjct: 65  TSKLNPQQEFLKIL-------HQNLVEILGINSKSIN--FNKTPTIIMLVGLQGSGKTTT 115

Query: 128 IGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
             KL+   +      K++L A DT+R AAIDQLK    +   +    E       +A EA
Sbjct: 116 AAKLAVFARQKKLAKKILLVACDTYRPAAIDQLKQLGKQVLIEVFYVE--KSPVQIAKEA 173

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              ++    D++I DTAGRL  N  LM  + ++   +K      P  +L +LDA +GQ+ 
Sbjct: 174 LIYSKNNDFDLVIFDTAGRLSINEELMNELSEIKENIK------PDQILFILDALSGQDI 227

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +   ++F+     TG I+TK+D  AR G  + I    KIPV  LG GE I+ LE F    
Sbjct: 228 INVAQIFNQKINLTGAIITKLDSNARAGAALSITHLLKIPVLLLGTGEKISALELFHPNR 287

Query: 306 FSAVITG------CLDYGEEKI 321
            +  I G       L+  EE I
Sbjct: 288 MADRILGMGDVRSLLEQAEENI 309


>gi|159118036|ref|XP_001709237.1| Signal recognition particle receptor [Giardia lamblia ATCC 50803]
 gi|157437353|gb|EDO81563.1| Signal recognition particle receptor [Giardia lamblia ATCC 50803]
          Length = 571

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 14/197 (7%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+VI + GVNGVGKTT I KL     + GL+ ++ A D+FRS A++QL+   +R  A  
Sbjct: 366 RPYVICMTGVNGVGKTTSIAKLLYIFKNNGLRSLVCACDSFRSGAVEQLQEHCNRLGATL 425

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                G +A+A+A    K+A++   D+ +IDT GR +NN  LM  +G ++        +A
Sbjct: 426 YSQGYGKNASAIAKYGIKEAESLNYDICLIDTTGRQYNNGPLMQALGALVL------ENA 479

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAV-------AGTTGLIMTKMDGTA-RGGGLIPIVVT 281
           P  VL V +A TG   + Q++ F           G  G+I+TK D    + G  + +   
Sbjct: 480 PDVVLFVGEALTGNEGVEQLKQFDCALKSYTNSRGIDGIILTKFDTCGDKVGAALNLCFV 539

Query: 282 HKIPVYFLGVGEGINDL 298
             +P+ ++G G+   D 
Sbjct: 540 CDLPILYVGTGQSYPDF 556


>gi|257205636|emb|CAX82469.1| Signal recognition particle 54 kDa protein [Schistosoma japonicum]
          Length = 532

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 113/218 (51%), Gaps = 10/218 (4%)

Query: 90  ELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           EL+H ++ P  K   W  +   P+VI++VG+ G GKTT   KL+      G K  +   D
Sbjct: 82  ELVH-LVDPQVKA--WQPARGSPNVIMLVGLQGCGKTTTATKLAYFYQRKGWKTCMICAD 138

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+ A DQLK  A +    F  S   +D   +A +  ++   +K +++I+DT+GR    
Sbjct: 139 TFRAGAFDQLKQNATKARIPFYGSYTETDPVVIARDGVQKFVEEKFEIIIVDTSGRHRQE 198

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             L     +M++V   ++   P  V+ VLDA+ GQ    Q   F A    + +I+TK+DG
Sbjct: 199 DSLFE---EMLQVSNAIE---PDHVIYVLDASIGQACEAQASAFKAKVDVSSVIVTKLDG 252

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            A+GGG +  V     P+ F+G GE + D E F  + F
Sbjct: 253 HAKGGGALSAVAATHSPITFIGTGEHVEDFEQFRVQPF 290


>gi|315607956|ref|ZP_07882949.1| signal recognition particle protein [Prevotella buccae ATCC 33574]
 gi|315250425|gb|EFU30421.1| signal recognition particle protein [Prevotella buccae ATCC 33574]
          Length = 447

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 7/196 (3%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRT 165
             +RP +IL+ G+ G GKTT  GKL+  +     K  +L A D +R AAIDQLK+  ++ 
Sbjct: 95  LKNRPAIILMSGLQGSGKTTFSGKLANMLKTKEHKNPLLVACDVYRPAAIDQLKVVGEQV 154

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                      D  A+A  A K+A+AK  DV+IIDTAGRL  +  +M  I  + + +   
Sbjct: 155 GVPVYAEPDNKDVIAIAANALKEAKAKNYDVVIIDTAGRLAVDEQMMTEISNLKQAVN-- 212

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I      P
Sbjct: 213 ----PDETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKP 268

Query: 286 VYFLGVGEGINDLEPF 301
           + F+G GE +  ++ F
Sbjct: 269 IKFIGTGEKMEAIDVF 284


>gi|156554455|ref|XP_001604233.1| PREDICTED: similar to Srp54 protein [Nasonia vitripennis]
          Length = 444

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+VI+ VG+ G GKTT   KL+        K  L   DTFR+ A DQ+K  A +    F
Sbjct: 100 RPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E       +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEVDPVVIAQEGVDMFIKEGYEIIIVDTSGRHKQEESLFE---EMLQVSNAVQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DAT GQ    Q + F        +I+TK+DG A+GGG +  V   + PV F+
Sbjct: 216 --NIIFVMDATIGQACEAQAKAFKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFV 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+DLEPF  K F + + G  D
Sbjct: 274 GTGEHIDDLEPFKTKPFISKLLGMGD 299


>gi|39995748|ref|NP_951699.1| signal recognition particle protein [Geobacter sulfurreducens PCA]
 gi|39982512|gb|AAR33972.1| signal recognition particle protein [Geobacter sulfurreducens PCA]
          Length = 452

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 143/287 (49%), Gaps = 14/287 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS 89
           ++S   + + +RE +  +L+ +D+   V +  VE +  +     V       Q+V+  V 
Sbjct: 21  VMSEENIKEALRE-VRLVLLEADVNFKVVKDFVERVRVRAVGTQVLQSLTPGQQVIKIVQ 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +   LM   +  + D + +P V I++VG+ G GKTT  GKL++ +     + +L   D
Sbjct: 80  EELVA-LMGGGEDNSLDLAAKPPVPIMMVGLQGAGKTTSCGKLARLLKGQRRRPLLVPAD 138

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +R AAI+QLK    + S +   S    D   +  EA + A     DV+I+DTAGR   +
Sbjct: 139 VYRPAAIEQLKTLGRQLSVEVFDSRADQDPVDICREALRYATLNGFDVVILDTAGRHQID 198

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM    +++R+    +   P  +L V DA TGQ A+     F+     TG+++TK+DG
Sbjct: 199 EYLM---NELVRI---KEAAEPREILFVADAMTGQEAVNVASGFNDRLDITGVVLTKLDG 252

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            A+GG  + I      PV  +GVGE ++ LE F A    + I G  D
Sbjct: 253 DAKGGAALSIRAVTGKPVKLVGVGEKLDALEVFHADRLVSRILGMGD 299


>gi|332797104|ref|YP_004458604.1| GTP-binding signal recognition particle SRP54 G-domain-containing
           protein [Acidianus hospitalis W1]
 gi|332694839|gb|AEE94306.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Acidianus hospitalis W1]
          Length = 449

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 138/283 (48%), Gaps = 28/283 (9%)

Query: 47  EELEDLLIRSDIGV----AVAQKIVEELLTKRYAKDVSVQ----RVLYDVSELIHKMLMP 98
           +EL+  LI +D+ V    ++  KI E L  ++    +  +    +++YD           
Sbjct: 28  KELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYD----------E 77

Query: 99  LSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           LS  F  D   +      P+VI++VGV G GKTT  GKL+      G KV L   D +R 
Sbjct: 78  LSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 137

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA++QL+   ++            DA  +A    ++   +K++++I+DTAGR H      
Sbjct: 138 AALEQLQQLGEQIGVPVYGEPGEKDAVGIAKRGVEKFLNEKMEIIIVDTAGR-HGYGEEA 196

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
           A + +M  + + +    P  V  V+DA+ GQ A      F+  +    +I+TKMDGTA+G
Sbjct: 197 ALLEEMKNIYEAI---KPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKG 253

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG +  V      + F+G GE I++LE F  + F A I G  D
Sbjct: 254 GGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARILGMGD 296


>gi|257058483|ref|YP_003136371.1| signal recognition particle protein [Cyanothece sp. PCC 8802]
 gi|256588649|gb|ACU99535.1| signal recognition particle protein [Cyanothece sp. PCC 8802]
          Length = 492

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 102/193 (52%), Gaps = 10/193 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VIL+ G+ G GKTT   KL+  +       ++ A D +R AAIDQL     +   +  
Sbjct: 100 PTVILMAGLQGTGKTTATAKLALYLRKQKRSCLMVATDIYRPAAIDQLITLGQQI--EVP 157

Query: 171 CSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
             E+GS+A    +A +  ++A+   VD ++IDTAGRL  +  +M  + ++   +K     
Sbjct: 158 VFELGSEANPVDIARQGVEKAKELGVDTVLIDTAGRLQIDESMMVELARIKEAVK----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L V+DA TGQ A      FH   G TG I+TKMDG  RGG  + +      P+ F
Sbjct: 213 -PDDTLLVVDAMTGQEAANLTRTFHEQIGITGAILTKMDGDTRGGAALSVRQISGQPIKF 271

Query: 289 LGVGEGINDLEPF 301
           +GVGE +  L+PF
Sbjct: 272 IGVGEKVEALQPF 284


>gi|309775679|ref|ZP_07670678.1| signal recognition particle protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916585|gb|EFP62326.1| signal recognition particle protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 471

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 151/302 (50%), Gaps = 22/302 (7%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A ESLS   +L K F + + K K      +S + ++D +RE +   L+ +D+   V + 
Sbjct: 1   MAFESLS--ERLGKAFKNITGKGK------LSEKNMNDMLRE-VRMSLLEADVNYGVVKD 51

Query: 66  IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +  +  +    +V       Q V+  V + I  +L     P N+  S+    +++VG+ 
Sbjct: 52  FIARVKEQALGTEVMNSLNPGQMVVKIVHDEIVALLGSEDAPVNYK-SNGITTVMMVGLQ 110

Query: 121 GVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT   K++  M      K +L A D  R AAI+QLK   +    +     + + A 
Sbjct: 111 GTGKTTASAKIANVMKKKQNRKPLLVACDVIRPAAIEQLKTLGESIGVEVFSLGVETKAL 170

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
             A +A + A+    D ++ DTAGRLH +  LM  +  +   +       P  +L  +DA
Sbjct: 171 ETAKQAMEYAKENGYDTVLFDTAGRLHIDEELMQELSDIKAYVH------PDDILLTVDA 224

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ+ +     FH     TGL++TK+DG +RGGG++ +    ++PV F+G+GE I+DL+
Sbjct: 225 MTGQDIVNVASSFHEQLDVTGLVLTKLDGDSRGGGILSVRSITQVPVKFVGLGEKIDDLD 284

Query: 300 PF 301
            F
Sbjct: 285 VF 286


>gi|148265784|ref|YP_001232490.1| signal recognition particle protein [Geobacter uraniireducens Rf4]
 gi|146399284|gb|ABQ27917.1| signal recognition particle subunit FFH/SRP54 (srp54) [Geobacter
           uraniireducens Rf4]
          Length = 449

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 143/290 (49%), Gaps = 20/290 (6%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLY 86
           +++   + D +RE +   L+ +D+   V +  VE +  K     V         V ++++
Sbjct: 21  VMTEENIKDALRE-VRLALLEADVNFKVVKDFVERVREKAVGTQVLQSLSPGQQVVKIVH 79

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           D  EL+   LM   +  + D + +P V I++VG+ G GKTT  GKL++ +     K ++ 
Sbjct: 80  D--ELVS--LMGGGEDNSLDLAAKPPVAIMMVGLQGAGKTTTCGKLARYLKAQRRKPLMV 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             D +R AAI+QLK    + S +   S+       +   A K A+    D +I DTAGR 
Sbjct: 136 PADVYRPAAIEQLKTLGRQLSIEVYDSQADQKPLDICRNALKYAELSGFDTVIFDTAGRH 195

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             +  LM    +++ +   +D   P  +L V DA TGQ A+     F    G TG+++TK
Sbjct: 196 QIDEYLM---DELVHIRDAVD---PREILFVADAMTGQEAVNVAAGFDERLGITGVVLTK 249

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +DG A+GG  + I      PV F+G+GE ++ LE F A    + I G  D
Sbjct: 250 LDGDAKGGAALSIKAVSGKPVKFVGLGEKLDALEVFHADRLVSRILGMGD 299


>gi|332295825|ref|YP_004437748.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332178928|gb|AEE14617.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 437

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 130/258 (50%), Gaps = 22/258 (8%)

Query: 52  LLIRSDIGVAVAQKIVEE----LLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNW 105
           L + SDI ++  +KIVEE    L T  +  + S   ++ ++   ELI+     L KP N 
Sbjct: 37  LFLESDIALSATKKIVEEIKNRLSTLEFTTETSPGTLVSNIVREELINL----LGKPGNI 92

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           DFS +P ++++VG+ G GKTT   K++    +    K +L   D  R AA  QL+  + +
Sbjct: 93  DFSEKPTLVMMVGIQGSGKTTTSAKIANYFATKENKKPLLVGADVRRPAAQLQLEKLSQQ 152

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
               F   +   D       A   A++K  D++I+DTAGR H +        +++  LK 
Sbjct: 153 IKIPFFTDK---DPFLACEGALNLARSKGYDLIIVDTAGRTHVDE-------ELLDELKT 202

Query: 225 LDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           L+    P + + V+D+  GQ A +  + F      TG I+TK DG ARGG    +     
Sbjct: 203 LNERFQPKNNILVIDSMMGQEATKVAKAFFNTIPLTGAILTKFDGDARGGAAFSLREVTG 262

Query: 284 IPVYFLGVGEGINDLEPF 301
           +P+ FLGVGE I +LE F
Sbjct: 263 VPLIFLGVGEKIQNLEKF 280


>gi|148643420|ref|YP_001273933.1| signal recognition particle protein Srp54 [Methanobrevibacter
           smithii ATCC 35061]
 gi|222445662|ref|ZP_03608177.1| hypothetical protein METSMIALI_01303 [Methanobrevibacter smithii
           DSM 2375]
 gi|288869608|ref|ZP_05975207.2| signal recognition particle protein [Methanobrevibacter smithii DSM
           2374]
 gi|148552437|gb|ABQ87565.1| signal recognition particle GTPase SRP54 [Methanobrevibacter
           smithii ATCC 35061]
 gi|222435227|gb|EEE42392.1| hypothetical protein METSMIALI_01303 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860574|gb|EFC92872.1| signal recognition particle protein [Methanobrevibacter smithii DSM
           2374]
          Length = 447

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 22/289 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSVQR----VLY 86
           +I  + +++ V+E ++  LI+SD+ +A+    ++KI +  L +   K ++ +     ++Y
Sbjct: 23  VIDKKTIEEVVKE-IQRALIQSDVNIALVLDLSKKIKKRALEEEPPKGITPREHVITIIY 81

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           +  E+++  L+    P   D   +P+ IL +G+ G GKTT IGKL + +   G    +  
Sbjct: 82  E--EMVN--LLGGEAP-GLDIDVKPYKILFLGLQGSGKTTTIGKLCRYLQKKGFNPAVVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DT+R AA +QL+   +             DA  LA +  K+ + +KV  +I DTAGR  
Sbjct: 137 TDTWRPAAYEQLRQLTEEMQVPLYGDPDNKDALDLAQKGLKEFKNRKV--IIFDTAGRHK 194

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
               L+A +  +  +++      P   + V+D T GQ A  Q + F        +I+TK+
Sbjct: 195 QEEDLIAEMDTLDDIIQ------PTESILVIDGTIGQQAGEQAKAFSQATDVGSIIITKL 248

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG+A+GGG +  V     P+ F+G GE I+D E F    F + + G  D
Sbjct: 249 DGSAKGGGAMSAVAETGAPIKFIGTGERIDDFELFDPARFISRLLGMGD 297


>gi|293601987|ref|ZP_06684443.1| signal recognition particle protein [Achromobacter piechaudii ATCC
           43553]
 gi|292819610|gb|EFF78635.1| signal recognition particle protein [Achromobacter piechaudii ATCC
           43553]
          Length = 468

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 140/289 (48%), Gaps = 30/289 (10%)

Query: 48  ELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-SKP 102
           E+   L+ +D+ + V ++ V    E+ L +  A  +S  + L  V   +HK L  L    
Sbjct: 33  EVRMALLEADVALPVVREFVARVKEKALGEEVAASLSPGQALVGV---VHKELTALMGGD 89

Query: 103 FNWDFS------HRPHVILVVGVNGVGKTTVIGKLSKKMSDA----------GLKVMLAA 146
              D +        P VIL+ G+ G GKTT  GKL++ +S+             KV++ +
Sbjct: 90  LGADSNELSLAVQPPAVILMAGLQGAGKTTTTGKLARWLSEGQHTQHGRKTGKKKVLVVS 149

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AAIDQLK  A +   DF+ S+       +A  A   A+    DVLI+DTAGRL 
Sbjct: 150 ADVYRPAAIDQLKSVAAQVGVDFLQSDPSQKPEDIARGAVDHARRHHYDVLILDTAGRLG 209

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  +M    + IR L   D   P   L V+DA  GQ+A+     F      TG+++TK+
Sbjct: 210 IDEAMM----REIRALH--DLVKPVETLFVVDAMQGQDAVNTARAFADALPLTGVVLTKL 263

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG ARGG  + +      P+ F+GV E ++ LEPF     +  + G  D
Sbjct: 264 DGDARGGAALSVRHVTGKPLKFVGVSEKLDGLEPFYPDRMAQRVLGMGD 312


>gi|218245446|ref|YP_002370817.1| signal recognition particle protein [Cyanothece sp. PCC 8801]
 gi|218165924|gb|ACK64661.1| signal recognition particle protein [Cyanothece sp. PCC 8801]
          Length = 492

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 102/193 (52%), Gaps = 10/193 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VIL+ G+ G GKTT   KL+  +       ++ A D +R AAIDQL     +   +  
Sbjct: 100 PTVILMAGLQGTGKTTATAKLALYLRKQKRSCLMVATDIYRPAAIDQLITLGQQI--EVP 157

Query: 171 CSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
             E+GS+A    +A +  ++A+   VD ++IDTAGRL  +  +M  + ++   +K     
Sbjct: 158 VFELGSEANPVDIARQGVEKAKELGVDTVLIDTAGRLQIDESMMVELARIKEAVK----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L V+DA TGQ A      FH   G TG I+TKMDG  RGG  + +      P+ F
Sbjct: 213 -PDDTLLVVDAMTGQEAANLTRTFHEQIGITGAILTKMDGDTRGGAALSVRQISGQPIKF 271

Query: 289 LGVGEGINDLEPF 301
           +GVGE +  L+PF
Sbjct: 272 IGVGEKVEALQPF 284


>gi|153810630|ref|ZP_01963298.1| hypothetical protein RUMOBE_01014 [Ruminococcus obeum ATCC 29174]
 gi|149833026|gb|EDM88108.1| hypothetical protein RUMOBE_01014 [Ruminococcus obeum ATCC 29174]
          Length = 448

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 148/280 (52%), Gaps = 23/280 (8%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML----- 96
           +E++  L+ +D+   V ++  + +  +   +DV       Q V+  V+E +  ++     
Sbjct: 33  KEVKMALLEADVNFRVVKQFTKSVQERAVGQDVMNGLNPGQMVIKIVNEELVNLMGSETT 92

Query: 97  -MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
            +PL KP N D +    V+++ G+ G GKTT + KL+ K+   G + +L A D +R AAI
Sbjct: 93  DLPL-KPGN-DIT----VLMMAGLQGAGKTTTVAKLAGKLKSKGKRPLLVACDVYRPAAI 146

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            QL++  ++   +        +   +A  A + A+A + +V++IDTAGRLH +  +M  +
Sbjct: 147 TQLQVNGEKQGVEVFSMGDKQNPVDIAKAAIEHAKANQQNVVLIDTAGRLHVDEDMMQEL 206

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +     + + +   ++L V DA TGQ+A+   + F    G  G+I+TKMDG  RGG  
Sbjct: 207 ADI-----KANVNVDCTILTV-DAMTGQDAVNVAKTFAEKVGIDGVILTKMDGDTRGGAA 260

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G+GE ++DLE F  +  ++ I G  D
Sbjct: 261 LSIKAVTGKPILFVGMGEKLSDLEQFYPERMASRILGMGD 300


>gi|15903209|ref|NP_358759.1| signal recognition particle protein [Streptococcus pneumoniae R6]
 gi|116515651|ref|YP_816611.1| signal recognition particle protein [Streptococcus pneumoniae D39]
 gi|15458797|gb|AAK99969.1| Signal recognition particle (Fifty four homolog) [Streptococcus
           pneumoniae R6]
 gi|116076227|gb|ABJ53947.1| signal recognition particle protein [Streptococcus pneumoniae D39]
          Length = 523

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMVAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|313158014|gb|EFR57420.1| signal recognition particle protein [Alistipes sp. HGB5]
          Length = 441

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 135/273 (49%), Gaps = 10/273 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNW 105
           +E+   LI +D+   VA+   +E+  K   +DV    +    +++++   L  L      
Sbjct: 32  KEIRRALIDADVNYKVAKSFTDEVKQKALGQDVLKAVKPGQMMTKIVRDELALLMGGTAT 91

Query: 106 D--FSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           D      P VIL+ G+ G GKTT  GKL+  + S  G +V+L AGD +R AAIDQLK+  
Sbjct: 92  DIRLEGNPAVILIAGLQGSGKTTFSGKLALFIKSKKGRQVLLVAGDVYRPAAIDQLKVLG 151

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +   +    E   D   +A  A K A+    +V+I+DTAGRL  +  +M  I  +   +
Sbjct: 152 GQIGVEVYTEEGSKDPVQIAENAIKYARQHAFNVVIVDTAGRLAVDEAMMQEITAIKTAV 211

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           K      P   L V+DA TGQ+A+     F+      G+++TK+DG  RGG  I I    
Sbjct: 212 K------PSETLFVVDAMTGQDAVNTAREFNDRLDFDGVVLTKLDGDTRGGAAISIRSVV 265

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+  GE ++ L+ F  +  +  I G  D
Sbjct: 266 NKPLKFISSGEKMDALQVFHPERMADRILGMGD 298


>gi|332880672|ref|ZP_08448345.1| signal recognition particle protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681306|gb|EGJ54230.1| signal recognition particle protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 450

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 140/279 (50%), Gaps = 13/279 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRRALLDADVNYKVAKTFTDTVKQKALGQNVLTAVKPSQLMVKIVHDELATL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAID 156
              +    +    P VIL+ G+NG GKTT+ GKL+  +     K  +LAA D +R AAI+
Sbjct: 86  MGGETAELNLQGHPSVILMAGLNGAGKTTLSGKLALMLKTKKRKNPLLAACDIYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK+  ++            DA  +A  A K+A+AK  DV+I+DTAGRL  +  +M  I 
Sbjct: 146 QLKVLGEQIGIPVYSEPDNKDAVQIAQNAVKEAKAKGYDVVIVDTAGRLAVDEQMMQEIA 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +   +       P   L V+DA TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 206 AIKHGIN------PDETLFVVDAMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I      P+ F+G GE +  ++ F     +  I G  D
Sbjct: 260 SIRTVVNKPIKFVGTGEKMEAIDQFHPSRMADRILGMGD 298


>gi|84489410|ref|YP_447642.1| hypothetical protein Msp_0601 [Methanosphaera stadtmanae DSM 3091]
 gi|84372729|gb|ABC56999.1| partially conserved hypothetical protein, predicted GTPase
           [Methanosphaera stadtmanae DSM 3091]
          Length = 550

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 141/263 (53%), Gaps = 24/263 (9%)

Query: 53  LIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-----VSELI----HKMLMPL 99
           LI  D+   VA++IVE    +L+ K+  +   ++    +     ++E+I    + +L  +
Sbjct: 282 LIEGDVAFDVAERIVESVKEDLIGKKIKRRGDMELFTTNALKKAITEIIDNGYYDLLGDI 341

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            K         P+ I+ VG+NG GKTT I K++  +   G   +  A DTFR+ AI+QL+
Sbjct: 342 EKSKE---KGEPYKIMFVGINGTGKTTTIAKIATYLEKHGYSSVFGASDTFRAGAIEQLE 398

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A+  +   +  E  SD AA+A++A + A+A   DV++IDT+GR+  N+ LM  + K+ 
Sbjct: 399 HHANNLNLKIIKHERNSDPAAVAFDAVEHAKASGKDVVLIDTSGRMQTNANLMDEMKKIK 458

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI- 278
           RV +      P  V+ V DA  G +A  Q   F+ V    G+I+TK D  A+GG  I I 
Sbjct: 459 RVSQ------PDIVIYVGDALMGNDATEQASKFNEVIDIDGIILTKADADAKGGAAISIG 512

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
            V HK P+ F+G G+  +DL  F
Sbjct: 513 HVIHK-PILFIGTGQSYDDLMEF 534


>gi|91772216|ref|YP_564908.1| signal recognition particle protein Srp54 [Methanococcoides
           burtonii DSM 6242]
 gi|121686981|sp|Q12ZG8|SRP54_METBU RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|91711231|gb|ABE51158.1| signal recognition particle SRP54 [Methanococcoides burtonii DSM
           6242]
          Length = 439

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 109/211 (51%), Gaps = 10/211 (4%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           D   +P  I+++G+ G GKTT   KLS+     GLK  +   DTFR  A  QLK   D+ 
Sbjct: 92  DIPLKPQTIMMIGLQGSGKTTTTSKLSRYFQRKGLKPAVICADTFRPGAYQQLKTLCDKL 151

Query: 166 SADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
           +  F   E+G+ DA  +       A+  K DVLI+DTAGR    + L+  + ++  + + 
Sbjct: 152 NVPFY-GEVGNPDAVGIVERGL--AELGKNDVLIVDTAGRHSLEADLIDEMEQIHEIAQ- 207

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L VLD   GQ A  Q   F+   G +G++++K+DGTA+GGG +  V     
Sbjct: 208 -----PDYKLLVLDGAIGQQASEQARAFNDSVGISGVVISKLDGTAKGGGALSAVSETNS 262

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + F+GVGE  +DLE F    F + + G  D
Sbjct: 263 AIAFIGVGETPDDLEKFEPDRFISRLLGMGD 293


>gi|295109860|emb|CBL23813.1| signal recognition particle protein [Ruminococcus obeum A2-162]
          Length = 448

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 140/274 (51%), Gaps = 11/274 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101
           +E++  L+ +D+   V ++  + +  +   +DV       Q V+  V+E +  ++   + 
Sbjct: 33  KEVKMALLEADVNFKVVKQFTKAVQERAVGQDVMNGLNPGQMVIKIVNEELVSLMGSETT 92

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                  +   VI++ G+ G GKTT + KL+ K+   G + +L A D +R AAI QL++ 
Sbjct: 93  ELPLKQGNEITVIMMAGLQGAGKTTTVAKLAGKLKSKGKRPLLVACDVYRPAAITQLQVN 152

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            ++   +        +   +A  A + A+A + +V++IDTAGRLH +  +M  +   I+ 
Sbjct: 153 GEKQGVEVFSMGDKQNPVDIAKAAIEHAKANQQNVVLIDTAGRLHVDENMMQELAD-IKA 211

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
              +D       L  +DA TGQ+A+   + F    G  G+I+TKMDG  RGG  + I   
Sbjct: 212 NVNVD-----CTLLTVDAMTGQDAVNVAKTFAEKVGIDGVILTKMDGDTRGGAALSIKAV 266

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ ++G+GE ++DLE F  +  ++ I G  D
Sbjct: 267 TGKPILYVGMGEKLSDLEQFYPERMASRILGMGD 300


>gi|219684207|ref|ZP_03539151.1| signal recognition particle protein [Borrelia garinii PBr]
 gi|219672196|gb|EED29249.1| signal recognition particle protein [Borrelia garinii PBr]
          Length = 444

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 143/284 (50%), Gaps = 18/284 (6%)

Query: 42  DDGVREELE---DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           D  + E +E   + L+ +D+ + V ++ +  ++ +  +K V V R +   S+ I  +   
Sbjct: 24  DKNISEAIEIIKNSLVDADVNLRVVRRFLNSIIEE--SKGVKVLRGIDPKSQFIKIVNDN 81

Query: 99  LSKPF---NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           L K     +++ S  P      IL++G+ G GKTT   KLS ++     KV+L A DTFR
Sbjct: 82  LVKFLGGKSYELSLHPVNKQSYILMLGLQGSGKTTTCAKLSLRLKKENRKVLLVAADTFR 141

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           +AA++QLKI   +            D   +   + + A+++  D +I+DT GRL   S+L
Sbjct: 142 AAAVEQLKILGSQIGVPVFSIAGEKDPIKIVKASMEFAESEFFDSVIVDTRGRLEVESLL 201

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           +  I K+  +LK      P   + V+D+  GQ A+   + F+   G TG I +K D   R
Sbjct: 202 VEEIKKIKDILK------PTETILVVDSMMGQVAVNIAKEFNENVGLTGAIFSKFDSDTR 255

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG ++       +P+ F+GVGE + DL+ F  +  ++ I G  D
Sbjct: 256 GGAVLSFKSICAVPIKFIGVGERVEDLDSFYPERIASRILGMGD 299


>gi|13542673|gb|AAH05543.1| Srp54c protein [Mus musculus]
          Length = 500

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAIQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I++ EPF  + F + + G  D
Sbjct: 274 GTGEHIDNFEPFKTQPFISKLLGMGD 299


>gi|172048109|sp|A5UMY7|SRP54_METS3 RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
          Length = 445

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 22/289 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSVQR----VLY 86
           +I  + +++ V+E ++  LI+SD+ +A+    ++KI +  L +   K ++ +     ++Y
Sbjct: 21  VIDKKTIEEVVKE-IQRALIQSDVNIALVLDLSKKIKKRALEEEPPKGITPREHVITIIY 79

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           +  E+++  L+    P   D   +P+ IL +G+ G GKTT IGKL + +   G    +  
Sbjct: 80  E--EMVN--LLGGEAP-GLDIDVKPYKILFLGLQGSGKTTTIGKLCRYLQKKGFNPAVVC 134

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DT+R AA +QL+   +             DA  LA +  K+ + +KV  +I DTAGR  
Sbjct: 135 TDTWRPAAYEQLRQLTEEMQVPLYGDPDNKDALDLAQKGLKEFKNRKV--IIFDTAGRHK 192

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
               L+A +  +  +++      P   + V+D T GQ A  Q + F        +I+TK+
Sbjct: 193 QEEDLIAEMDTLDDIIQ------PTESILVIDGTIGQQAGEQAKAFSQATDVGSIIITKL 246

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG+A+GGG +  V     P+ F+G GE I+D E F    F + + G  D
Sbjct: 247 DGSAKGGGAMSAVAETGAPIKFIGTGERIDDFELFDPARFISRLLGMGD 295


>gi|293400506|ref|ZP_06644651.1| signal recognition particle protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305532|gb|EFE46776.1| signal recognition particle protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 467

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 149/302 (49%), Gaps = 22/302 (7%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A ESLS   +L K F + + K K      +S + ++D +RE +   L+ +D+   V + 
Sbjct: 1   MAFESLS--ERLGKAFKNITGKGK------LSEKNMNDMLRE-VRMSLLEADVNYGVVKD 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +  +  K    +V       Q V+  V + I  +L     P N+  +    V++V G+ 
Sbjct: 52  FIARVKDKALGTEVMTSLNPGQMVVKIVHDEIVALLGNEEAPINYKKTGITTVMMV-GLQ 110

Query: 121 GVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT   K++  M      K +L A D  R AAI+QLK   +    +     + + A 
Sbjct: 111 GTGKTTAAAKIANVMKKKQSRKPLLVACDVIRPAAIEQLKTLGESIDVEVFSLGVETKAL 170

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
             A +A   A+ +  D ++ DTAGRLH +  LM  +  +   +       P  +L  +DA
Sbjct: 171 ETAQKAMDYAKEQGYDTVVFDTAGRLHIDEELMQELSDIKAFVH------PDDILLTVDA 224

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ+ +     FH     TGL++TK+DG +RGGG++ +    ++PV F+G+GE I DL+
Sbjct: 225 MTGQDIVNVASSFHEQLSVTGLVLTKLDGDSRGGGILSVRSITQVPVKFVGLGEKIEDLD 284

Query: 300 PF 301
            F
Sbjct: 285 VF 286


>gi|172038385|ref|YP_001804886.1| signal recognition particle protein [Cyanothece sp. ATCC 51142]
 gi|171699839|gb|ACB52820.1| signal recognition particle protein [Cyanothece sp. ATCC 51142]
          Length = 489

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 142/281 (50%), Gaps = 29/281 (10%)

Query: 34  DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVL 85
           D I+   + D ++E +   L+ +D+ + V +  + ++       +V         + +++
Sbjct: 20  DKITEANMQDALKE-VRRALLEADVNLQVVKTFIADVEKAAIGAEVIAGVNPGQQLIKIV 78

Query: 86  YDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           YD  EL+  M    +PL++  N      P VIL+ G+ G GKTT   KL+  +       
Sbjct: 79  YD--ELVKVMGESNVPLAQAENA-----PTVILMAGLQGTGKTTATAKLALYLRKQQRTA 131

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIID 200
           ++ A D +R AAIDQL    ++   +    E+G+ A    +A +  ++A+   +D +IID
Sbjct: 132 LMVATDIYRPAAIDQLVTLGEQI--EVPVFELGNQANPVDIATQGVEKAKEMGIDTVIID 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  +M    ++ RV K ++P      L V+DA TGQ A      FH   G TG
Sbjct: 190 TAGRLQIDEEMML---ELARVKKAVNPD---DTLLVVDAMTGQEAANLTRTFHDQIGVTG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            I+TKMDG  RGG  + +      P+ F+GVGE +  L+PF
Sbjct: 244 AILTKMDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPF 284


>gi|203284591|ref|YP_002222331.1| signal recognition particle protein [Borrelia duttonii Ly]
 gi|201084034|gb|ACH93625.1| signal recognition particle protein [Borrelia duttonii Ly]
          Length = 449

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 6/207 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           ++   IL++G+ G GKTT   KL+ ++     KV+L A DTFR+AAI+QLK+   + +  
Sbjct: 99  NKLSCILMLGLQGSGKTTTCAKLAMRLKSENRKVLLVAADTFRAAAIEQLKVLGSQINIS 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E       +  ++ + A+A+  D +IIDT GRL    +L+  I  +  ++      
Sbjct: 159 VFALENEDSPIKVVKKSIEYARAELFDTVIIDTRGRLEVEDLLLREIIDIKNIV------ 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   + V DA TGQ A+   + F+   G TG+I TK D  ARGG ++ +     +P+ F
Sbjct: 213 VPTETILVADAMTGQVAVNIAKKFNESVGITGVIFTKFDSDARGGAILSLKTICGVPIKF 272

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE   DL+ F     S+ I G  D
Sbjct: 273 VGVGEKPEDLDVFYPDRVSSRILGMGD 299


>gi|295691479|ref|YP_003595172.1| signal recognition particle protein [Caulobacter segnis ATCC 21756]
 gi|295433382|gb|ADG12554.1| signal recognition particle protein [Caulobacter segnis ATCC 21756]
          Length = 508

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 146/289 (50%), Gaps = 17/289 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           ++S + +D+ +RE +   L+ +D+ + V +  + +   K  A   +V R +    +++  
Sbjct: 21  VLSEKDIDEALRE-VRVALLEADVALPVVKDFISK--AKELAGGEAVIRSVKPADQVVKI 77

Query: 95  MLMPLSKPFNWDFS-------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAA 146
           +   L      D         + P +IL+ G+ G GKTT  GKL+ ++S    K V++A+
Sbjct: 78  VYDGLVDMLGGDVPTGLNLALNPPSIILMAGLQGSGKTTTTGKLALRLSKTDRKKVLVAS 137

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DT R AA++QL + A +   + +    G  A  +A  A   A+    DVLI+DTAGR  
Sbjct: 138 LDTRRPAAMEQLALLATQVGVESLPIVAGQSAVDIAKRAVSAAKLGGYDVLILDTAGRTT 197

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  +M+   ++ R+        P   + V D+ TGQ+A+R  + FH     TGLI+T+ 
Sbjct: 198 LDEAMMSEAAEVARIAN------PSETILVADSLTGQDAVRTAKAFHERLPLTGLILTRA 251

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + +     +P+ FLG GE I+ L+ F A+  +  I G  D
Sbjct: 252 DGDGRGGAALSMRHVTGLPIKFLGAGEKIDQLDVFDARRVAGRILGQGD 300


>gi|251782371|ref|YP_002996673.1| signal recognition particle subunit [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391000|dbj|BAH81459.1| signal recognition particle subunit [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 522

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 159/312 (50%), Gaps = 23/312 (7%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72
           +T  F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  
Sbjct: 1   MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +    ++       Q++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT
Sbjct: 61  RAIGHEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTT 118

Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAY 183
             GKL+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D  A  +  
Sbjct: 119 FAGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHLAVDIVR 176

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  +QA+  + D ++IDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ
Sbjct: 177 KGLEQARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQ 230

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            A      F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F  
Sbjct: 231 EAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHP 290

Query: 304 KDFSAVITGCLD 315
              S+ I G  D
Sbjct: 291 DRMSSRILGMGD 302


>gi|217032545|ref|ZP_03438035.1| hypothetical protein HPB128_172g8 [Helicobacter pylori B128]
 gi|216945750|gb|EEC24374.1| hypothetical protein HPB128_172g8 [Helicobacter pylori B128]
          Length = 291

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 7/205 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+L+ G+ G GKTT   KL+  +     KV+L A D  R AA++QLK+  ++   + V
Sbjct: 50  PTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVE-V 108

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E       +A  A K+A+  + DVLI+D+AGRL  +  LM  + ++  +L       P
Sbjct: 109 FYEENKSVKEIANNALKRAKEAQFDVLIVDSAGRLAIDKELMQELKEVKEILN------P 162

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H VL V DA +GQ+ ++    F+   G +G++++K D  ++GG  + I     +P+ F+G
Sbjct: 163 HEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIG 222

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE I DL+ FV +     + G  D
Sbjct: 223 SGEKIPDLDVFVPERIVGRLMGAGD 247


>gi|118591424|ref|ZP_01548822.1| signal recognition particle protein [Stappia aggregata IAM 12614]
 gi|118436096|gb|EAV42739.1| signal recognition particle protein [Stappia aggregata IAM 12614]
          Length = 513

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 157/306 (51%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL--DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
           F S S +L  GI D ++ R    ++ V E L ++   LI +D+ + + +   +++  +  
Sbjct: 2   FESLSDRL-SGIFDKLTGRGALSENDVNEALREIRRALIEADVALPIVRSFTDKVRNRAV 60

Query: 76  AKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V  SV   Q V+  V + + +ML   + P + + +  P  I++VG+ G GKTT   K
Sbjct: 61  GAEVVKSVTPGQMVVKIVHDQLVEMLGEEAHPIDLN-APAPVAIMMVGLQGSGKTTTTAK 119

Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++++M+     KV++A+ DT R AA +QLK+  ++   D +    G     +A  A   A
Sbjct: 120 IARRMTQRDKRKVLMASLDTRRPAAQEQLKVLGEQNDIDTLPIVAGQGPVEIAKRAMSAA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DV+++DTAGR+H +  LM  + ++    +      PH +L V D+ TGQ+A+   
Sbjct: 180 KLGGYDVVMLDTAGRIHIDEPLMVEMAEVKAAAQ------PHEILLVADSLTGQDAVNLA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F    G TG+ +T+MDG  RGG  + +      PV  +G GE  + LE F  +  +  
Sbjct: 234 QSFDERVGITGIALTRMDGDGRGGAALSMQAVTGKPVKLIGTGEKSDALEDFHPRRIADR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|182684220|ref|YP_001835967.1| signal recognition particle protein [Streptococcus pneumoniae
           CGSP14]
 gi|182629554|gb|ACB90502.1| signal recognition particle protein [Streptococcus pneumoniae
           CGSP14]
          Length = 523

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLQKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|16078661|ref|NP_389480.1| signal recognition particle-like (SRP) GTPase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309473|ref|ZP_03591320.1| signal recognition particle-like (SRP) component [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313798|ref|ZP_03595603.1| signal recognition particle-like (SRP) component [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318722|ref|ZP_03600016.1| signal recognition particle-like (SRP) component [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221322993|ref|ZP_03604287.1| signal recognition particle-like (SRP) component [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|321315364|ref|YP_004207651.1| signal recognition particle protein [Bacillus subtilis BSn5]
 gi|586037|sp|P37105|SRP54_BACSU RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|2309080|dbj|BAA21691.1| Ffh [Bacillus subtilis]
 gi|2633970|emb|CAB13471.1| signal recognition particle-like (SRP) GTPase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|320021638|gb|ADV96624.1| signal recognition particle protein [Bacillus subtilis BSn5]
          Length = 446

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+ +  D +I+DTAGRLH +  LM  +  +  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDELTNVKEIAN---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+D+ TGQ+A+   + F+   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LEPF  +  ++ I G  D
Sbjct: 273 FAGLGEKLDALEPFHPERMASRILGMGD 300


>gi|291484149|dbj|BAI85224.1| signal recognition particle-like (SRP) component [Bacillus subtilis
           subsp. natto BEST195]
          Length = 446

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+ +  D +I+DTAGRLH +  LM  +  +  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDELTNVKEIAN---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+D+ TGQ+A+   + F+   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LEPF  +  ++ I G  D
Sbjct: 273 FAGLGEKLDALEPFHPERMASRILGMGD 300


>gi|160938805|ref|ZP_02086156.1| hypothetical protein CLOBOL_03699 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437768|gb|EDP15528.1| hypothetical protein CLOBOL_03699 [Clostridium bolteae ATCC
           BAA-613]
          Length = 458

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++    RL +  V+  L+++   L+ +D+   V ++ +  +  +   
Sbjct: 3   FESLSDKLQNVFKNLRGKGRLSEADVKAALKEVKMALLEADVSFRVVKQFIGSVQERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +   +   S+   +I++ G+ G GKTT   K+
Sbjct: 63  EDVFGSLTPGQTVIKIVTEELVKLMGSETTEISLKPSNEISIIMMAGLQGAGKTTTTAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + KM   G K +LAA D +R AAI+QL+I  DR           +    +A  A + A  
Sbjct: 123 AAKMKAKGRKPLLAACDIYRPAAIEQLQINGDRVGIPVFSMGNKNKPVDIAKAALEHASK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             ++V+I+DTAGRLH +  +M    +++ +   LD     ++L V+DA TGQ+A+     
Sbjct: 183 NGLNVVILDTAGRLHIDETMM---DELVEIKDNLD--VCQTIL-VVDAMTGQDAVNVAGT 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FNDKIGIDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|72080399|ref|YP_287457.1| signal recognition particle protein [Mycoplasma hyopneumoniae 7448]
 gi|71913523|gb|AAZ53434.1| signal recognition particle protein [Mycoplasma hyopneumoniae 7448]
          Length = 440

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 155/322 (48%), Gaps = 34/322 (10%)

Query: 17  LTKGFASTSLKLKEGIT----DIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           LT    S+  KL++ IT    D++  +R +   + E   +LL+  D    V  +++++ L
Sbjct: 5   LTNRIQSSLKKLQKSITINESDLVEITREIRLALLEADVNLLVVKDFISKVKTQVLKQGL 64

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           T +        ++L       H+ L+ +    SK  N  F+  P +I++VG+ G GKTT 
Sbjct: 65  TSKLNPQQEFLKIL-------HQNLVEILGINSKSIN--FNKTPTIIMLVGLQGSGKTTT 115

Query: 128 IGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
             KL+   +      K++L A DT+R AAIDQLK    +   +    E       +A EA
Sbjct: 116 AAKLAVFARQKKLAKKILLVACDTYRPAAIDQLKQLGKQVLIEVFYVE--KSPVQIAKEA 173

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              ++    D++I DTAGRL  N  LM  + ++   +K      P  +L +LDA +GQ+ 
Sbjct: 174 LIYSKNNDFDLVIFDTAGRLSINEELMNELSEIKENIK------PDQILFILDALSGQDI 227

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +   ++F+     TG I+TK+D  AR G  + I    KIPV  +G GE I+ LE F    
Sbjct: 228 INVAQIFNQKINLTGAIITKLDSNARAGAALSITHLLKIPVLLVGTGEKISALELFHPNR 287

Query: 306 FSAVITG------CLDYGEEKI 321
            +  I G       L+  EE I
Sbjct: 288 MADRILGMGDVRSLLEQAEENI 309


>gi|319901661|ref|YP_004161389.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacteroides
           helcogenes P 36-108]
 gi|319416692|gb|ADV43803.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacteroides
           helcogenes P 36-108]
          Length = 440

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 139/265 (52%), Gaps = 13/265 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
              +    +   +P VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AAI+
Sbjct: 86  MGGETAEINIDSKPSVILMSGLQGSGKTTFSGKLARMLKAKKNRKPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++ A++            D   +A  A ++A+ K  D++I+DTAGRL  +  +M  I 
Sbjct: 146 QLRVLAEQIEVPMYSEPDSKDPVTIAQNAIQEAKEKGYDLVIVDTAGRLAVDEEMMNEIA 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            + + +       P+ +L V+D+ TGQ+A+   + F+      G+I+TK+DG  RGG  +
Sbjct: 206 AIKKAID------PNEILFVVDSMTGQDAVNTAKEFNERLDFNGVILTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I      P+ F+G GE ++ ++ F
Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQF 284


>gi|312601025|gb|ADQ90280.1| Signal recognition particle protein [Mycoplasma hyopneumoniae 168]
          Length = 440

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 158/325 (48%), Gaps = 40/325 (12%)

Query: 17  LTKGFASTSLKLKEGIT----DIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           LT    S+  KL++ IT    D++  +R +   + E   +LL+  D    V  +++++ L
Sbjct: 5   LTNRIQSSLKKLQKSITINESDLVEITREIRLALLEADVNLLVVKDFISKVKTQVLKQGL 64

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           T +        ++L       H+ L+ +    SK  N  F+  P +I++VG+ G GKTT 
Sbjct: 65  TSKLNPQQEFLKIL-------HQNLVEILGINSKSIN--FNKTPTIIMLVGLQGSGKTTT 115

Query: 128 IGKLS-----KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
             KL+     KK++    K++L A DT+R AAIDQLK    +   +    E       +A
Sbjct: 116 AAKLAVFARQKKLTK---KILLVACDTYRPAAIDQLKQLGKQVLIEVFYVE--KSPVQIA 170

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            EA   ++    D++I DTAGRL  N  LM  + ++   +K      P  +L +LDA +G
Sbjct: 171 KEALIYSKNNDFDLVIFDTAGRLSINEELMNELSEIKENIK------PDQILFILDALSG 224

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+ +   ++F+     TG I+TK+D  AR G  + I    KIPV  +G GE I+ LE F 
Sbjct: 225 QDIINVAQIFNQKINLTGAIITKLDSNARAGAALSITHLLKIPVLLVGTGEKISALELFH 284

Query: 303 AKDFSAVITG------CLDYGEEKI 321
               +  I G       L+  EE I
Sbjct: 285 PNRMADRILGMGDVRSLLEQAEENI 309


>gi|313201905|ref|YP_004040563.1| signal recognition particle protein [Methylovorus sp. MP688]
 gi|312441221|gb|ADQ85327.1| signal recognition particle protein [Methylovorus sp. MP688]
          Length = 450

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 143/285 (50%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIH 93
           +S   + D +RE +   L+ +D+ + V ++ + ++  +   +DV +Q +     V +++H
Sbjct: 22  LSEENISDAMRE-VRMALLEADVALPVVKEFIAQVKERAVGRDV-LQSLTPGQAVIQVVH 79

Query: 94  KMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           + L  L    N   +     P +IL+ G+ G GKTT   KL++ + +   KV+LA+ D +
Sbjct: 80  EELTRLMGEQNVGLNLAAVPPAIILMAGLQGSGKTTTSAKLARLLKEQKKKVLLASADVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI+QLK  A     D   S        +A      A+    DV+I DTAGRL  +  
Sbjct: 140 RPAAIEQLKTMAKSLEVDCFDSNASQKPQDIAANVLDFAKRHFYDVVIFDTAGRLGIDEA 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +MA I ++  +L       P   L V+DA  GQ+A+     F      TG+I+TK+DG A
Sbjct: 200 MMAEIQQLHALLN------PVETLFVVDAMQGQDAVNTARAFGETLPLTGVILTKLDGDA 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + +      P+ F+GV E ++ LE F  +  ++ + G  D
Sbjct: 254 RGGAALSVRHITGKPIKFVGVSEKVDGLEVFHPERMASRVLGMGD 298


>gi|296330813|ref|ZP_06873288.1| signal recognition particle protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674331|ref|YP_003866003.1| signal recognition particle protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151818|gb|EFG92692.1| signal recognition particle protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412575|gb|ADM37694.1| signal recognition particle protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 446

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+ +  D +I+DTAGRLH +  LM  +  +  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDELTNVKEIAN---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+D+ TGQ+A+   + F+   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LEPF  +  ++ I G  D
Sbjct: 273 FAGLGEKLDALEPFHPERMASRILGMGD 300


>gi|213586204|ref|ZP_03368030.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 269

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 144/269 (53%), Gaps = 19/269 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V+      Q  +  V SEL+  M    ++  N   +  P V+L+ G+ G GKTT +GK
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           + F+     TG+++TK+DG ARGG  + I
Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSI 262


>gi|86151630|ref|ZP_01069844.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86153420|ref|ZP_01071624.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613116|ref|YP_001000405.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005347|ref|ZP_02271105.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85841259|gb|EAQ58507.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85843146|gb|EAQ60357.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249374|gb|EAQ72334.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 445

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 112/205 (54%), Gaps = 6/205 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V+L+ G+ G GKTT   KL+  +     KV++AA D  R AA++QL+   +    
Sbjct: 92  SKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEI 151

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           +    E   D   +A EA K+A++  VDVL++DTAGRL  +  LM      ++V+K  D 
Sbjct: 152 ELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALM----NELKVVK--DV 205

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V DA +GQ+ ++    F+ V G +G+I++K D   +GG  + I     IP+ 
Sbjct: 206 LNPDEIFYVADAMSGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLR 265

Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312
           F+GVGE + DLE F+     + I G
Sbjct: 266 FIGVGEKVADLEVFIPDRIVSRIMG 290


>gi|324507951|gb|ADY43362.1| Signal recognition particle receptor subunit alpha [Ascaris suum]
          Length = 657

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 145/299 (48%), Gaps = 38/299 (12%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP- 102
           V +++ D LI  ++    A K+ + +  K   K V S  RV   V E I + L+ L  P 
Sbjct: 367 VLDKMRDTLIAKNVAAEPADKLCQSVAAKLEGKVVGSFSRVAGIVKESIREALVQLLTPK 426

Query: 103 ---------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                          HRP+VI+  GVNGVGK+T + K++  +++ G +V++AAGDTFR+ 
Sbjct: 427 RRVDILRDVLEAKREHRPYVIVFCGVNGVGKSTNLAKITFWLNENGHRVLIAAGDTFRAG 486

Query: 154 AIDQLKIWADR------TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           A++QL+            S        G D A LA  A   A  + +DV+++DTAGR+ +
Sbjct: 487 AVEQLRTHTKHLNSLHPNSVQLYEQGYGKDPAGLAAAAIAIASERNIDVVLVDTAGRMQD 546

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGT--- 258
           N  LM  + K+IR+      + P  VL V +A  G +A+ Q+  F      HA  G    
Sbjct: 547 NEPLMRSLAKLIRI------NEPDLVLFVGEALVGNDAVDQLVKFNQALADHAALGADAR 600

Query: 259 --TGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
              G+++TK D    + G  I +      P+ F+G G+   DL+     + SAV+   L
Sbjct: 601 LIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYKDLKNL---NISAVVHSLL 656


>gi|283956118|ref|ZP_06373605.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792438|gb|EFC31220.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 445

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 140/272 (51%), Gaps = 17/272 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSK 101
           E L+  L+++D    V  K+ +ELLT    +DV       ++ L  +   +  +L    K
Sbjct: 30  ETLKKALLKAD----VHHKVTKELLTS-IEEDVKQNGIGQKQFLNAIKVNLENILSVNGK 84

Query: 102 PFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
              + F+ +P  V+L+ G+ G GKTT   KL+  +     KV++AA D  R AA++QL+ 
Sbjct: 85  NQGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQ 144

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
             +    +    E   D   +A EA K+A++  VDVL++DTAGRL  +  LM  +  +  
Sbjct: 145 LCEANEIELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDETLMNELKAVKD 204

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           VL       P  +  V DA +GQ+ ++    F+ V G +G+I++K D   +GG  + I  
Sbjct: 205 VLN------PDEIFYVADAMSGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAK 258

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              IP+ F+GVGE + DLE F+     + I G
Sbjct: 259 QIGIPLRFIGVGEKVADLEVFIPDRIVSRIMG 290


>gi|148272543|ref|YP_001222104.1| signal recognition particle protein [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830473|emb|CAN01408.1| signal recognition particle protein [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 523

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 150/310 (48%), Gaps = 22/310 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L E   ++    +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FGTLSDRLAETFKNLRGKGKLSAADVDGTVREIRRALLEADVALDVVKAFTASVRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L    +   +     P VI++ G+ G GKTT+ GKL
Sbjct: 64  GEVSQALNPAQQVVQIVNEELVGILGGQQRRIQF-AKKPPTVIMLAGLQGAGKTTLAGKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            K ++  G   ML A D  R  A+ QL++  ++        E G+   +   +  +A K 
Sbjct: 123 GKWLAKDGHTPMLVAADLQRPNAVQQLQVVGEQAGVPVFAPEPGNGKGNPVRVTKDAMKH 182

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A  K+  V+IIDTAGRL  ++ LM    +   + K  DP     VL V+DA  GQ+A+  
Sbjct: 183 AIDKQYSVVIIDTAGRLGVDAELMK---QAADIRKATDPD---EVLFVIDAMIGQDAVAT 236

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG++++K+DG ARGG  + +      P+ F   GEG++D EPF     ++
Sbjct: 237 AKAFQDGVDFTGVVLSKLDGDARGGAALSVASVTGRPIMFASTGEGLDDFEPFHPDRMAS 296

Query: 309 VITGCLDYGE 318
            I   LD G+
Sbjct: 297 RI---LDLGD 303


>gi|114571433|ref|YP_758113.1| signal recognition particle subunit FFH/SRP54 (srp54) [Maricaulis
           maris MCS10]
 gi|114341895|gb|ABI67175.1| signal recognition particle subunit FFH/SRP54 (srp54) [Maricaulis
           maris MCS10]
          Length = 521

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 14/288 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS 89
           ++S + +D  +RE +   L+ +D+ + V +   +++  +   +DV       Q+V+  V 
Sbjct: 21  VLSEKDVDAALRE-IRVALLEADVALDVVKAATKQIRERAVGEDVIRAVSPGQQVIKIVH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAG 147
           + +  +L    +P        P + IL+ G+ G GKTT   KL+K++ +    KV+LA+ 
Sbjct: 80  DALVDLLGGEGEPVGLSLEGEPPIAILMAGLQGSGKTTTSAKLAKRIQETQKKKVLLASL 139

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT R AA++QL+  A +    F+       A  +A  A    + +  DV+I+DTAGR   
Sbjct: 140 DTRRPAAMEQLQQLAGQIDVAFLPIVPNQRAVDIAKRAMNAGRLQGFDVVILDTAGRTSI 199

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  +MA    + RV        P   L V DA TGQ+A+     FH     TGL++T+MD
Sbjct: 200 DEEMMAEAHDIARVTN------PRETLLVADALTGQDAVETARRFHDRLPLTGLVLTRMD 253

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  RGG  + +     +P+ FLGV E  + L+ F AK  +  I G  D
Sbjct: 254 GDGRGGAALSMRHVTGLPIKFLGVSEKPDGLDAFDAKRVAGRILGRGD 301


>gi|323700095|ref|ZP_08112007.1| signal recognition particle protein [Desulfovibrio sp. ND132]
 gi|323460027|gb|EGB15892.1| signal recognition particle protein [Desulfovibrio desulfuricans
           ND132]
          Length = 509

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 143/286 (50%), Gaps = 15/286 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           +    + +G+RE +   L+ +D+   V ++ V+++  +    +V       Q  +  V+E
Sbjct: 22  LDENNIKEGLRE-VRLALLEADVNFKVVKRFVDQVKERALGDEVLKGLEPGQHFIKIVNE 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT 149
            + ++L    +  + D   RP  +++VG+ G GKTT  GK++  +    G K  L   D 
Sbjct: 81  ELIELLG--GEQQDLDLKARPLKLMMVGLQGSGKTTSSGKIALFLRKQHGKKPYLVPADV 138

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAIDQL   A +       S    +   +  +A  +A+    D+++ DTAGRLH + 
Sbjct: 139 YRPAAIDQLNTLARQLDVPVYPSTTDMNPVDICKDALVKAEELGCDLILFDTAGRLHIDE 198

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  +  + R  +      P  +L V DA TGQ+A+   E F+   G TG+++TKMDG 
Sbjct: 199 KLMDELANIKRECQ------PQEILFVADAMTGQDAVTVAESFNDKLGITGVVLTKMDGD 252

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ARGG  + I       V F+GVGE +++LE F     ++ I G  D
Sbjct: 253 ARGGAALSIKTVTGRSVKFVGVGEKLSELELFHPDRIASRILGMGD 298


>gi|149007045|ref|ZP_01830714.1| signal recognition particle protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|168484497|ref|ZP_02709449.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC1873-00]
 gi|307127122|ref|YP_003879153.1| signal recognition particle protein [Streptococcus pneumoniae
           670-6B]
 gi|147761349|gb|EDK68315.1| signal recognition particle protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|172042260|gb|EDT50306.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC1873-00]
 gi|306484184|gb|ADM91053.1| signal recognition particle protein [Streptococcus pneumoniae
           670-6B]
 gi|332074621|gb|EGI85095.1| signal recognition particle protein [Streptococcus pneumoniae
           GA17545]
 gi|332201751|gb|EGJ15821.1| signal recognition particle protein [Streptococcus pneumoniae
           GA47368]
          Length = 523

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKTL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|15836678|ref|NP_297366.1| signal recognition particle protein [Xylella fastidiosa 9a5c]
 gi|9104846|gb|AAF82886.1|AE003861_3 signal recognition particle protein [Xylella fastidiosa 9a5c]
          Length = 434

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 143/269 (53%), Gaps = 16/269 (5%)

Query: 42  DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           ++ +RE   E+   L+ +D+ ++V Q ++E +  +   ++V       Q ++  V + + 
Sbjct: 3   EENIREATREVRIALLEADVALSVVQALIERIKIRALGQEVFKSLTPGQALIKVVRDELA 62

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRS 152
            ++   +   N +    P VIL+ G+ G GKT+++GKL+K + +   K VM+ + D +R 
Sbjct: 63  AVMGDSASELNLNVPA-PAVILLAGLQGAGKTSMVGKLAKYLKEKRKKKVMVVSADVYRP 121

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL+I +++ +     S +  +   + + A   A+   VDVL++DTAGRL  +    
Sbjct: 122 AAIEQLRILSEQVNVLCFPSSVEQNPVDIVHAAIADAKKSFVDVLLVDTAGRLAIDQ--- 178

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
              G M  +    D   P   L V+D+ TGQ+A    + F      TG+I+TK DG ARG
Sbjct: 179 ---GMMDEIKALHDTLVPVETLFVVDSMTGQDAANTAKAFSEALPLTGVILTKTDGDARG 235

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GG + +      P+ F+G GE ++DL+ F
Sbjct: 236 GGALSVRYITGCPIKFVGTGEKVDDLDVF 264


>gi|331703417|ref|YP_004400104.1| signal recognition particle M54 protein [Mycoplasma mycoides subsp.
           capri LC str. 95010]
 gi|328801972|emb|CBW54126.1| Signal recognition particle M54 protein [Mycoplasma mycoides subsp.
           capri LC str. 95010]
          Length = 447

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 148/283 (52%), Gaps = 18/283 (6%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           ++ ++E L+++   L+ +D+ +  A++I+  +  K     +S      Q+++  V E + 
Sbjct: 26  EENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELV 85

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRS 152
            +L   + P   D + +P V+++VG+ G GKTT   KL+  ++    K +L  G D +R 
Sbjct: 86  NILGKENAPL--DINKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRP 143

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI+QL     +T+   V  +   D    A +A + A+    DV+I+DTAGRL  + +LM
Sbjct: 144 GAIEQLVQLGQKTNTQ-VFEKGKQDPVKTAEQALEYAKENNFDVVILDTAGRLQVDQVLM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
               K +  LK+    +P+ +L V+D  +GQ  +     F+     +G+++TK+DG ARG
Sbjct: 203 ----KELDNLKK--KTSPNEILLVVDGMSGQEIINVTNEFNDKLKLSGVVVTKLDGDARG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + I    K+P+ F+G GEG N L  F  K  +  + G  D
Sbjct: 257 GATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGD 299


>gi|270292853|ref|ZP_06199064.1| signal recognition particle protein [Streptococcus sp. M143]
 gi|270278832|gb|EFA24678.1| signal recognition particle protein [Streptococcus sp. M143]
          Length = 523

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKTL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|401118|sp|Q01442|SRP54_MYCMY RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|150210|gb|AAA25441.1| SRPM54 [Mycoplasma mycoides]
          Length = 447

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 148/283 (52%), Gaps = 18/283 (6%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIH 93
           ++ ++E L+++   L+ +D+ +  A++I+  +  K     +S      Q+++  V E + 
Sbjct: 26  EENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELV 85

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRS 152
            +L   + P   D + +P V+++VG+ G GKTT   KL+  ++    K +L  G D +R 
Sbjct: 86  NILGKENAPL--DINKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRP 143

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI+QL     +T+   V  +   D    A +A + A+    DV+I+DTAGRL  + +LM
Sbjct: 144 GAIEQLVQLGQKTNTQ-VFEKGKQDPVKTAEQALEYAKENNFDVVILDTAGRLQVDQVLM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
               K +  LK+    +P+ +L V+D  +GQ  +     F+     +G+++TK+DG ARG
Sbjct: 203 ----KELDNLKK--KTSPNEILLVVDGMSGQEIINVTNEFNDKLKLSGVVVTKLDGDARG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + I    K+P+ F+G GEG N L  F  K  +  + G  D
Sbjct: 257 GATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGD 299


>gi|313139569|ref|ZP_07801762.1| signal recognition particle protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132079|gb|EFR49696.1| signal recognition particle protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 569

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 154/330 (46%), Gaps = 40/330 (12%)

Query: 5   KVASESLSWIR-------KLTKGFASTSLKLKEGITDIISSRRLD----DGVREELEDLL 53
           + AS +  W         ++   F+S + +L      + S  +L     DG   E+   L
Sbjct: 2   RAASAAARWFSAATARLVRIMAAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRAL 61

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDF 107
           + +D+ + V +     +  +    +VS      Q+V+  V+E +  +L   + +P N+  
Sbjct: 62  LDADVALDVVRSFTARIRERALGTEVSEALNPAQQVVKIVNEELTDVLGQGVDRPLNF-A 120

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            + P +I++ G+ G GKTT+ GKL   + D+G   +L A D  R  A+ QL++  +R   
Sbjct: 121 KNPPTIIMLAGLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGV 180

Query: 168 DFVCSEIG----------------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
                E G                 D   +A ++   A+ K  D +IIDTAGRL  + +L
Sbjct: 181 PVYAPEKGVQSDGGDSVSAPGETSGDPVKVARDSIALAKQKLYDTVIIDTAGRLGVDEVL 240

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M    +  R ++  D   P+ +L V+DA  GQ+A++  + F      TG++++K+DG AR
Sbjct: 241 M----QQARDIR--DAVNPNEILFVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDAR 294

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GG  + +      P+ F   GEG+ D E F
Sbjct: 295 GGAALSVASVTGKPILFASTGEGLKDFEVF 324


>gi|332200732|gb|EGJ14804.1| signal recognition particle protein [Streptococcus pneumoniae
           GA41317]
          Length = 523

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|225856949|ref|YP_002738460.1| signal recognition particle protein [Streptococcus pneumoniae
           P1031]
 gi|225725114|gb|ACO20966.1| signal recognition particle protein [Streptococcus pneumoniae
           P1031]
          Length = 523

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|53714504|ref|YP_100496.1| putative signal recognition protein [Bacteroides fragilis YCH46]
 gi|60682525|ref|YP_212669.1| signal recognition particle protein [Bacteroides fragilis NCTC
           9343]
 gi|253565005|ref|ZP_04842461.1| signal recognition particle protein [Bacteroides sp. 3_2_5]
 gi|265766036|ref|ZP_06094077.1| signal recognition particle protein [Bacteroides sp. 2_1_16]
 gi|52217369|dbj|BAD49962.1| putative signal recognition protein [Bacteroides fragilis YCH46]
 gi|60493959|emb|CAH08751.1| signal recognition particle protein [Bacteroides fragilis NCTC
           9343]
 gi|251946470|gb|EES86847.1| signal recognition particle protein [Bacteroides sp. 3_2_5]
 gi|263253704|gb|EEZ25169.1| signal recognition particle protein [Bacteroides sp. 2_1_16]
 gi|301164001|emb|CBW23557.1| signal recognition particle protein [Bacteroides fragilis 638R]
          Length = 439

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 146/266 (54%), Gaps = 15/266 (5%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKGFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
              +    D   +P VIL+ G+ G GKTT  GKL++ + +    + +L A D +R AAI+
Sbjct: 86  MGGETVEIDTKGQPAVILMSGLQGSGKTTFSGKLARMLKTKKNKRPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           QL++ A++     + SEI S D  ++A  A K+A+AK  D++I+DTAGRL  +  +M  I
Sbjct: 146 QLRVLAEQIDVP-MYSEIDSKDPVSIAQNAIKEARAKGYDLVIVDTAGRLAVDEQMMNEI 204

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +   ++      P+ +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  
Sbjct: 205 AAIKEAIQ------PNEILFVVDSMTGQDAVNTAKEFNERLDFDGVVLTKLDGDTRGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPF 301
           + I      P+ F+G GE ++ ++ F
Sbjct: 259 LSIRSVVNKPIKFVGTGEKLDAIDQF 284


>gi|239908107|ref|YP_002954848.1| signal recognition particle protein [Desulfovibrio magneticus RS-1]
 gi|239797973|dbj|BAH76962.1| signal recognition particle protein [Desulfovibrio magneticus RS-1]
          Length = 505

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 149/303 (49%), Gaps = 14/303 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L++    I    RL ++ V+  L ++   L+ +D+   V +  VE +  +   
Sbjct: 2   FDSLTDRLEDVFRKIRGQARLTEENVQTALREVRLALLEADVNFKVVKDFVERVRERAVG 61

Query: 77  KDV-SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           +DV         V +++H+ L+ +   +  + D S  P VI+VVG+ G GKTT   KL+ 
Sbjct: 62  QDVLKSLNPGQQVVKIVHEELIEILGGQATDLDLSGSPAVIMVVGLQGSGKTTTCAKLAL 121

Query: 134 KMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K+  +   K  L   D +R AAIDQL   A +   +   S    +   +   A  +A+  
Sbjct: 122 KLRREFKRKPYLVPADVYRPAAIDQLHKLASQLDIEAYPSTPDQNPVDICAAALAEAKRT 181

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV+++DTAGRLH +  LM  +  +          AP  +L V DA TGQ+A+     F
Sbjct: 182 GHDVVLLDTAGRLHIDEALMDELAAIKAGC------APGEILFVADAMTGQDAVTVAAAF 235

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     TG+++TKMDG ARGG  + +      P+  +G GE ++DLE F     ++ I G
Sbjct: 236 NERLDITGVVLTKMDGDARGGAALSVRQVTGKPIKLVGTGEKVSDLELFYPDRAASRILG 295

Query: 313 CLD 315
             D
Sbjct: 296 MGD 298


>gi|225860882|ref|YP_002742391.1| signal recognition particle protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230784|ref|ZP_06964465.1| signal recognition particle protein [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254274|ref|ZP_06977860.1| signal recognition particle protein [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502715|ref|YP_003724655.1| signal recognition particle protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225728379|gb|ACO24230.1| signal recognition particle protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238310|gb|ADI69441.1| signal recognition particle protein [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 523

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|167623030|ref|YP_001673324.1| signal recognition particle protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167353052|gb|ABZ75665.1| signal recognition particle protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 457

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL ++ V+E L ++   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNSVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   +   +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELENAMGEANEALDLS-AQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K V++ + D +R AAI QL+  A      F  S++      +A  A   A+
Sbjct: 121 AKFLREREKKSVLVVSADVYRPAAIKQLETLAAEVEVQFFPSDVSQKPVDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I ++  V+       P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDEAMMDEIKELHAVIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LE F     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEAFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|15598941|ref|NP_252435.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           PAO1]
 gi|107103261|ref|ZP_01367179.1| hypothetical protein PaerPA_01004330 [Pseudomonas aeruginosa PACS2]
 gi|116051744|ref|YP_789417.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889976|ref|YP_002438840.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           LESB58]
 gi|254236655|ref|ZP_04929978.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           C3719]
 gi|254242437|ref|ZP_04935759.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           2192]
 gi|296387745|ref|ZP_06877220.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           PAb1]
 gi|313109153|ref|ZP_07795124.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           39016]
 gi|9949914|gb|AAG07133.1|AE004793_10 signal recognition particle protein Ffh [Pseudomonas aeruginosa
           PAO1]
 gi|115586965|gb|ABJ12980.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168586|gb|EAZ54097.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           C3719]
 gi|126195815|gb|EAZ59878.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           2192]
 gi|218770199|emb|CAW25961.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           LESB58]
 gi|310881626|gb|EFQ40220.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           39016]
          Length = 457

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V ++  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNKVKERAVG 61

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLS 132
            +VS          +++   L  L    N D +     P VIL+ G+ G GKTT  GKL+
Sbjct: 62  TEVSKSLTPGQAFVKIVRAELEELMGAANEDLALSVAPPAVILMAGLQGAGKTTTAGKLA 121

Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + + +   K VM+ + D +R AAI QL+  A      F  S++     A+A  A ++A+ 
Sbjct: 122 RFLKERKKKSVMVVSADVYRPAAIKQLETLAGEVGVTFFPSDVSQKPVAIAEAAIREARL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +DV+I+DTAGRLH ++ +M  I ++   +K      P   L V+DA TGQ+A    + 
Sbjct: 182 KFIDVVIVDTAGRLHIDADMMDEIKQVHAAIK------PAETLFVVDAMTGQDAANTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TK+DG ARGG  + +      P+ FLG+GE    L+PF     ++ I 
Sbjct: 236 FNDALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFLGMGEKSEALDPFHPDRVASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|149012344|ref|ZP_01833413.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP19-BS75]
 gi|169832782|ref|YP_001694736.1| signal recognition particle protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225854751|ref|YP_002736263.1| signal recognition particle protein [Streptococcus pneumoniae JJA]
 gi|303261607|ref|ZP_07347554.1| signal recognition particle protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|303267279|ref|ZP_07353142.1| signal recognition particle protein [Streptococcus pneumoniae
           BS457]
 gi|303268434|ref|ZP_07354229.1| signal recognition particle protein [Streptococcus pneumoniae
           BS458]
 gi|147763670|gb|EDK70605.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP19-BS75]
 gi|168995284|gb|ACA35896.1| signal recognition particle protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225723340|gb|ACO19193.1| signal recognition particle protein [Streptococcus pneumoniae JJA]
 gi|301802076|emb|CBW34809.1| signal recognition particle protein [Streptococcus pneumoniae
           INV200]
 gi|302637187|gb|EFL67675.1| signal recognition particle protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|302642040|gb|EFL72392.1| signal recognition particle protein [Streptococcus pneumoniae
           BS458]
 gi|302643206|gb|EFL73490.1| signal recognition particle protein [Streptococcus pneumoniae
           BS457]
          Length = 523

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|327389521|gb|EGE87866.1| signal recognition particle protein [Streptococcus pneumoniae
           GA04375]
          Length = 523

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|226227753|ref|YP_002761859.1| signal recognition particle protein [Gemmatimonas aurantiaca T-27]
 gi|226090944|dbj|BAH39389.1| signal recognition particle protein [Gemmatimonas aurantiaca T-27]
          Length = 452

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 144/281 (51%), Gaps = 31/281 (11%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-----RYAKDVSVQRVLYDVS 89
           +++   + DG+RE +  +L+ +D+  A+ ++ +E +  +     +  +    Q+++  V 
Sbjct: 21  VLTESDIKDGMRE-VRRVLLEADVNFALTREFLERVEKQAIGVLQLKQVQPAQQLVKIVH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           + +  ML    +      S  P V+++VG+ G GKTT  GKL++K+        L A D 
Sbjct: 80  DELTAMLGERREGLKMS-SVPPTVVMMVGLQGSGKTTTAGKLARKLKLEAKTTRLVAADV 138

Query: 150 FRSAAIDQLK---------IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           +R AAIDQL+         ++ADRT+ D V          +A     Q    +  V+I+D
Sbjct: 139 YRPAAIDQLETLGKALDVPVYADRTTQDVV---------KIAKAGIDQGVRNRDRVVIVD 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  ++ +M  + ++   +K      P  +L V D  TGQ A++  + F+     TG
Sbjct: 190 TAGRLQIDADMMDELKRLKAAIK------PDEILFVADGMTGQEAVKIAQGFNEALDITG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +I+TK+DG ARGG  + I    K P+ ++GVGE  + LE F
Sbjct: 244 VILTKLDGDARGGAALSIYGVLKKPIKYIGVGEKPDALEEF 284


>gi|148655435|ref|YP_001275640.1| signal recognition particle protein [Roseiflexus sp. RS-1]
 gi|148567545|gb|ABQ89690.1| signal recognition particle subunit FFH/SRP54 (srp54) [Roseiflexus
           sp. RS-1]
          Length = 444

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 145/287 (50%), Gaps = 23/287 (8%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIH 93
           +D VRE ++ +   L+ +D+ + V +  V  +  K   ++V+     VQ+V+    +++H
Sbjct: 24  EDDVREAMKQVRIALLEADVNLKVVRDFVARVTEKAIGEEVAKSLTPVQQVI----KIVH 79

Query: 94  KMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           + L+ L    N   +     P VI+++G+ G GKTT   KL+  +   G + +L A D +
Sbjct: 80  QELIDLLGQANVPLAEARPGPTVIMLIGLQGSGKTTTAAKLALWLRKKGKRPLLVAADIY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI QL+    +                +A  A ++A+ + +  +IIDTAGRL  +  
Sbjct: 140 RPAAITQLESLGRQLGIPVHAEGTQVSPPEIARHALRRARDENLTHVIIDTAGRLQIDEP 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LMA + ++   +       P   L V+DA  GQ A+R  E F+   G TG+I TK+DG A
Sbjct: 200 LMAELEQINAAVD------PVERLLVVDAMIGQEAVRVAEEFNRRVGLTGVIFTKVDGDA 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGI--NDLEPFVAKDFSAVITGCLD 315
           RGG  + +     +P+ FLG GE +  + +EPF     ++ I G  D
Sbjct: 254 RGGAALSVRAVTGVPIKFLGSGEKVEASTIEPFHPDRLASRILGMGD 300


>gi|21910377|ref|NP_664645.1| putative signal recognition particle -inhibited division protein
           [Streptococcus pyogenes MGAS315]
 gi|21904574|gb|AAM79448.1| putative signal recognition particle -inhibited division protein
           [Streptococcus pyogenes MGAS315]
          Length = 520

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 159/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGTGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187
           L+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  +  +
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+  + D ++IDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     S
Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|253755628|ref|YP_003028768.1| signal recognition particle protein [Streptococcus suis BM407]
 gi|251818092|emb|CAZ55886.1| signal recognition particle protein [Streptococcus suis BM407]
          Length = 512

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++ G+ G GKTT  GKL+ K+  +   + +L A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMAGLQGAGKTTFTGKLANKLKQEENARPLLIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAAL--AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              E+G+   AL    +  +QA+A   D ++IDTAGRL  +  LM  +    R +K    
Sbjct: 159 PVFELGNQVPALEIVRQGLEQAKANHNDYVLIDTAGRLQIDQALMTEL----REIKEF-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+     TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNDQLAITGVILTKIDGDTRGGAALSVRHITGQPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|227488603|ref|ZP_03918919.1| signal recognition particle protein [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091497|gb|EEI26809.1| signal recognition particle protein [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 538

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 145/282 (51%), Gaps = 26/282 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  ++ +  +   +DVS      Q+V+  V+E + ++L   ++      
Sbjct: 30  LLEADVSLPVVRGFIKRIKERAGGQDVSQALNPAQQVVKIVNEELIEILGGETRHLQM-A 88

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
            + P VI++ G+ G GKTT+ GKL+K ++  G   ML A D  R  A+ QL+I  +R   
Sbjct: 89  KNPPTVIMLAGLQGAGKTTLAGKLAKHLASQGHTPMLVACDLQRPGAVQQLQIVGERAGV 148

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   T+ D    E+G+   D   +A +  ++A+ ++ DV+I+DTAGRL  +  LM 
Sbjct: 149 PTFAPDPGTTLDTTEHEMGTSHGDPVLVAKQGIEEAKRQQRDVVIVDTAGRLGIDEELMR 208

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
                IR     D   P  VL V+DA  GQ+A++  + F    G TG+ +TK+DG ARGG
Sbjct: 209 QASN-IR-----DAVNPDEVLFVIDAMIGQDAVQTAQAFRDGVGFTGVALTKLDGDARGG 262

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F   GE ++D + F  +  ++ I G  D
Sbjct: 263 AALSIREVTGKPIMFASTGEKLDDFDVFHPERMASRILGMGD 304


>gi|193216162|ref|YP_001997361.1| signal recognition particle protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193089639|gb|ACF14914.1| signal recognition particle protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 449

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 130/268 (48%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  VE++  +   ++V       Q ++  V + + K +    K  N   
Sbjct: 38  LLDADVNYKVTKNFVEQVRKQALGEEVIKSVSPAQMIVKIVHDELVKAMGGEQKDINLKT 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P VI+V G+ G GKTT   KL+  +   G   +L A D +R AAI+QLK    +   
Sbjct: 98  SRMPAVIMVAGLQGSGKTTFTAKLANLLKKKGRAPLLIAADVYRPAAIEQLKTLGAQIGV 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                E   DA   A +  + A+    +V I+DTAGRL  +  +MA   ++ R L     
Sbjct: 158 PVFSIE-EKDALKAAKQGIEFAKQNSKNVAIVDTAGRLQIDEEMMAEAERLKREL----- 211

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            +P  +L V+D+  GQ A+   ++F+      G+++TKMDG  RGG  + I      P+ 
Sbjct: 212 -SPEEILFVVDSMIGQEAVNTAKVFNDRLDFDGVVLTKMDGDTRGGAALSIKTVVDKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           FL  GE ++DL+ F  +  +  I G  D
Sbjct: 271 FLSQGEKVDDLDIFYPERMAQRILGMGD 298


>gi|83746816|ref|ZP_00943864.1| signal recognition particle, subunit ffh/srp54 [Ralstonia
           solanacearum UW551]
 gi|207721472|ref|YP_002251912.1| gtp-binding signal recognition particle srp54, g-domain protein
           [Ralstonia solanacearum MolK2]
 gi|207744368|ref|YP_002260760.1| gtp-binding signal recognition particle srp54, g-domain protein
           [Ralstonia solanacearum IPO1609]
 gi|83726585|gb|EAP73715.1| signal recognition particle, subunit ffh/srp54 [Ralstonia
           solanacearum UW551]
 gi|206586632|emb|CAQ17218.1| gtp-binding signal recognition particle srp54, g-domain protein
           [Ralstonia solanacearum MolK2]
 gi|206595773|emb|CAQ62700.1| gtp-binding signal recognition particle srp54, g-domain protein
           [Ralstonia solanacearum IPO1609]
          Length = 478

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 8/221 (3%)

Query: 97  MPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAA 154
           +P+ +    + +   P +IL+ G+ G GKTT +GKL+K + +   K V+  + D +R AA
Sbjct: 105 LPMGRAAELNLNVQPPAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAA 164

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           I QLK  +++  ADF  S+       +A  A   A+    DVLI+DTAGRL  +  +M  
Sbjct: 165 IAQLKTVSEQVGADFFPSQPDQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQE 224

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           I  +   LK      P   L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG 
Sbjct: 225 IAALHATLK------PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGA 278

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F+GV E ++ LEPF     +  I G  D
Sbjct: 279 ALSVRHITGKPIKFVGVAEKLDGLEPFYPDRMAQRILGMGD 319


>gi|302525168|ref|ZP_07277510.1| signal recognition particle protein [Streptomyces sp. AA4]
 gi|302434063|gb|EFL05879.1| signal recognition particle protein [Streptomyces sp. AA4]
          Length = 512

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 150/308 (48%), Gaps = 22/308 (7%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT    S S K +    DI ++ R       E+   L+ +D+ + V +  + ++  +  
Sbjct: 8   RLTSALQSLSRKGRLSDADIDATAR-------EIRIALLEADVALPVVKAFIAKIKDRAK 60

Query: 76  AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +VS      Q+V+  V+E +  +L   ++  N    + P VI++ G+ G GKTT+ GK
Sbjct: 61  GAEVSQALNPAQQVVKIVNEELVGILGGETRRLNL-AKNPPSVIMLAGLQGAGKTTLAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L+  +   G   ML A D  R  A++QL+I  +R        E G+   D   +A  A +
Sbjct: 120 LAMWLKKQGHAPMLVACDLQRPNAVNQLQIVGERAGVTTFAPEPGNGVGDPVDVARRAIE 179

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+  + D++++DTAGRL  +  LM     +   ++      P  VL V+DA  GQ+A+ 
Sbjct: 180 EAKHAQYDIVVVDTAGRLGVDEELMKQAADIREAVQ------PDEVLFVVDAMIGQDAVT 233

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             E F    G TG+++TK+DG ARGG  + +      P+ F   GE + D + F     +
Sbjct: 234 TAEAFRDGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFASNGEKLEDFDTFHPDRMA 293

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 294 SRILGMGD 301


>gi|194398377|ref|YP_002037890.1| signal recognition particle protein [Streptococcus pneumoniae G54]
 gi|194358044|gb|ACF56492.1| signal recognition particle protein [Streptococcus pneumoniae G54]
          Length = 523

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|146318530|ref|YP_001198242.1| Signal recognition particle GTPase [Streptococcus suis 05ZYH33]
 gi|146320726|ref|YP_001200437.1| Signal recognition particle GTPase [Streptococcus suis 98HAH33]
 gi|253751657|ref|YP_003024798.1| signal recognition particle protein [Streptococcus suis SC84]
 gi|253753559|ref|YP_003026700.1| signal recognition particle protein [Streptococcus suis P1/7]
 gi|145689336|gb|ABP89842.1| Signal recognition particle GTPase [Streptococcus suis 05ZYH33]
 gi|145691532|gb|ABP92037.1| Signal recognition particle GTPase [Streptococcus suis 98HAH33]
 gi|251815946|emb|CAZ51560.1| signal recognition particle protein [Streptococcus suis SC84]
 gi|251819805|emb|CAR45741.1| signal recognition particle protein [Streptococcus suis P1/7]
 gi|292558300|gb|ADE31301.1| Signal recognition particle protein [Streptococcus suis GZ1]
 gi|319758083|gb|ADV70025.1| Signal recognition particle GTPase [Streptococcus suis JS14]
          Length = 512

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++ G+ G GKTT  GKL+ K+  +   + +L A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMAGLQGAGKTTFTGKLANKLKQEENARPLLIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAAL--AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              E+G+   AL    +  +QA+A   D ++IDTAGRL  +  LM  +    R +K    
Sbjct: 159 PVFELGNQVPALEIVRQGLEQAKANHNDYVLIDTAGRLQIDQALMTEL----REIKEF-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+     TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNDQLAITGVILTKIDGDTRGGAALSVRHITGQPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|261749270|ref|YP_003256955.1| signal recognition particle protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497362|gb|ACX83812.1| signal recognition particle protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 450

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 151/304 (49%), Gaps = 15/304 (4%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +KL K F    LK    IT+I  +  + + +R  L D  +   I     QK+ E+ + K+
Sbjct: 7   KKLNKAFHI--LKGNSKITEINIAETMKE-IRRALIDADVNYKIAKTFVQKVKEKSIGKK 63

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
               ++ ++++    +L++  L+ L   K    + S+ P +IL+ G+ G GKT+   KL+
Sbjct: 64  VLTSLNPKQLII---KLVYDELVTLMGKKNREINISNNPSIILICGLQGSGKTSFSSKLA 120

Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
             +     K  +L A D +R AAIDQLKI AD+        +   +   +  ++   A  
Sbjct: 121 FFLCRKKNKNPLLVAADIYRPAAIDQLKIIADKVHLPVFFLKENKNVIEIIEKSLIYASK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           KK +V+IIDTAGRL  +  +M  I K+ +         P   L V+D+ TGQ+A+   ++
Sbjct: 181 KKYNVVIIDTAGRLAIDKKMMDEIQKISQY------SNPDETLFVVDSMTGQDAINTAQI 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G++MTK+DG +RGG  I +      P+ F+  GE I D+E F  +  +  I 
Sbjct: 235 FSHTLNFDGIVMTKLDGDSRGGAAITMSSVIGKPIKFISNGEKIEDIEIFYPERIANRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|157964240|ref|YP_001499064.1| Signal recognition particle protein [Rickettsia massiliae MTU5]
 gi|157844016|gb|ABV84517.1| Signal recognition particle protein [Rickettsia massiliae MTU5]
          Length = 452

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 151/290 (52%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89
           I++  ++D  +R+ +   L+ SD+ + V +  + E+  K   ++V  SV   Q ++  + 
Sbjct: 24  ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKILH 82

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P V  L+VG+ G GKTT   KL+ ++ +   KV+L + D
Sbjct: 83  EEMINLLASSESETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLRNQNKKVLLVSLD 142

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL I A+    + +    G +   +   A  +A+    DV+I DTAGR H +
Sbjct: 143 TYRPAAQEQLAILANSVQINSLPIVQGEEPLDIVKRAIAEAKISAYDVVIYDTAGRTHID 202

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M     + ++++      P   L V+D+ TGQ+A+     F+     +GLI++++DG
Sbjct: 203 KAMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLEISGLILSRIDG 256

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            ++GG  + +    K P+ FL  GE + DLE F AK  ++ I   LD G+
Sbjct: 257 DSKGGAALSVKYITKKPIKFLSSGENLTDLEEFDAKRLASRI---LDMGD 303


>gi|68161017|gb|AAY86940.1| lr0017 [Lactobacillus reuteri]
          Length = 260

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 8/235 (3%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-L 140
           Q+++  V++ + K++   + P N    H P VI++VG+ G GKTT  GKL+ ++ +    
Sbjct: 13  QQIVKIVNDELTKLMGEEAVPLNK-APHIPTVIMMVGLQGAGKTTTAGKLALRLKNENHA 71

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           + M  A D +R AAI QL+  AD+            D   +  E  + A+    D +IID
Sbjct: 72  RPMFIAADVYRPAAITQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVAKKNHNDYVIID 131

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  LM  +  +  ++       P+ +L V+D+ TGQNA+   + F      TG
Sbjct: 132 TAGRLQIDEQLMDELANIKELVN------PNEILLVIDSMTGQNAVNTAQGFDDKLDITG 185

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ I G  D
Sbjct: 186 VVLTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASRILGMGD 240


>gi|15901147|ref|NP_345751.1| signal recognition particle protein [Streptococcus pneumoniae
           TIGR4]
 gi|111658514|ref|ZP_01409180.1| hypothetical protein SpneT_02000341 [Streptococcus pneumoniae
           TIGR4]
 gi|148989312|ref|ZP_01820692.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP6-BS73]
 gi|148998927|ref|ZP_01826362.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP11-BS70]
 gi|149002661|ref|ZP_01827593.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP14-BS69]
 gi|168487456|ref|ZP_02711964.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|168491206|ref|ZP_02715349.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC0288-04]
 gi|168493207|ref|ZP_02717350.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|168575742|ref|ZP_02721657.1| signal recognition particle protein [Streptococcus pneumoniae
           MLV-016]
 gi|221231975|ref|YP_002511127.1| signal recognition particle protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225859083|ref|YP_002740593.1| signal recognition particle protein [Streptococcus pneumoniae
           70585]
 gi|237649986|ref|ZP_04524238.1| signal recognition particle protein [Streptococcus pneumoniae CCRI
           1974]
 gi|237821108|ref|ZP_04596953.1| signal recognition particle protein [Streptococcus pneumoniae CCRI
           1974M2]
 gi|307067936|ref|YP_003876902.1| signal recognition particle GTPase [Streptococcus pneumoniae AP200]
 gi|14972772|gb|AAK75391.1| signal recognition particle protein [Streptococcus pneumoniae
           TIGR4]
 gi|147755237|gb|EDK62289.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP11-BS70]
 gi|147759272|gb|EDK66265.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP14-BS69]
 gi|147925290|gb|EDK76369.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP6-BS73]
 gi|183569731|gb|EDT90259.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|183574503|gb|EDT95031.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC0288-04]
 gi|183576649|gb|EDT97177.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|183578377|gb|EDT98905.1| signal recognition particle protein [Streptococcus pneumoniae
           MLV-016]
 gi|220674435|emb|CAR68988.1| signal recognition particle protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225720844|gb|ACO16698.1| signal recognition particle protein [Streptococcus pneumoniae
           70585]
 gi|301794362|emb|CBW36790.1| signal recognition particle protein [Streptococcus pneumoniae
           INV104]
 gi|306409473|gb|ADM84900.1| Signal recognition particle GTPase [Streptococcus pneumoniae AP200]
 gi|332073626|gb|EGI84105.1| signal recognition particle protein [Streptococcus pneumoniae
           GA17570]
 gi|332203136|gb|EGJ17204.1| signal recognition particle protein [Streptococcus pneumoniae
           GA47901]
          Length = 523

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|229098314|ref|ZP_04229261.1| Signal recognition particle protein [Bacillus cereus Rock3-29]
 gi|229104407|ref|ZP_04235076.1| Signal recognition particle protein [Bacillus cereus Rock3-28]
 gi|229117331|ref|ZP_04246709.1| Signal recognition particle protein [Bacillus cereus Rock1-3]
 gi|228666231|gb|EEL21695.1| Signal recognition particle protein [Bacillus cereus Rock1-3]
 gi|228679105|gb|EEL33313.1| Signal recognition particle protein [Bacillus cereus Rock3-28]
 gi|228685212|gb|EEL39143.1| Signal recognition particle protein [Bacillus cereus Rock3-29]
          Length = 449

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K ML A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+    D ++IDTAGRLH +  LM  + K+  V      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAN---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ+A+   + FH   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDAMTGQDAVNVAQSFHDQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ +E F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDAIEAFHPERMASRILGMGD 300


>gi|226365994|ref|YP_002783777.1| signal recognition particle protein [Rhodococcus opacus B4]
 gi|226244484|dbj|BAH54832.1| signal recognition particle protein [Rhodococcus opacus B4]
          Length = 535

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 152/320 (47%), Gaps = 34/320 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL     D    E+   L+ +D+ + V +  + ++  K  A
Sbjct: 9   FESLSDRLTGALKDLRGKGRLSGADIDATCREIRLALLEADVALPVVRSFIAKI--KERA 66

Query: 77  KDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           K V V       Q+V+  V+E +  +L   ++   +  +  P VI++ G+ G GKTT+ G
Sbjct: 67  KGVEVSAALNPAQQVVKIVNEELVGILGGETRRLAFAKTP-PTVIMLAGLQGSGKTTLAG 125

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS------------- 176
           KL+K + D G   +L A D  R  A+ QL+I  +R  A       G+             
Sbjct: 126 KLAKWLRDQGHTPLLVACDLQRPGAVTQLQIVGERAGATVFAPHPGTSIGGGDNELGITA 185

Query: 177 -DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D   +A    ++A+ K+ DV+I+DTAGRL  ++ LMA     IR     D   P   + 
Sbjct: 186 ADPVEVARAGVEEARNKQFDVVIVDTAGRLGIDADLMAQAAG-IR-----DAVNPDETIF 239

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDA  GQ+A+   E F    G TG+++TK+DG ARGG  + +      P+ F   GE +
Sbjct: 240 VLDAMIGQDAVSTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFASTGEKL 299

Query: 296 NDLEPFVAKDFSAVITGCLD 315
            D + F     ++ I G  D
Sbjct: 300 EDFDVFHPDRMASRILGMGD 319


>gi|157165369|ref|YP_001466989.1| signal recognition particle protein [Campylobacter concisus 13826]
 gi|112800915|gb|EAT98259.1| signal recognition particle protein [Campylobacter concisus 13826]
          Length = 446

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 115/217 (52%), Gaps = 9/217 (4%)

Query: 99  LSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L+ P N  F + P    ++L+ G+ G GKTT   KL+  +     KV++AA D  R AA+
Sbjct: 79  LTAPGNQGFVYAPVAPTIVLMAGLQGSGKTTTTIKLANYLKLRKKKVLVAACDLQRLAAV 138

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+        D    E  ++   +A EA ++A++   DVL++DTAGRL  +  LM  I
Sbjct: 139 EQLRQLCVANEIDLFYIENENNPIKVAKEALEKAKSGLYDVLLVDTAGRLAIDEKLMQEI 198

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +   +       PH +  V DA +GQ+A++    F+ + G +G+I++K D  ++GG  
Sbjct: 199 KDVKNAIN------PHEIFYVADAMSGQDAVKTATSFNEILGISGVILSKFDSDSKGGVA 252

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           I I     IP+ F+G GE + D+E F+     + I G
Sbjct: 253 ISIAKQLNIPLRFVGTGEKVADIESFIPDRIVSRIMG 289


>gi|307706752|ref|ZP_07643557.1| signal recognition particle protein [Streptococcus mitis SK321]
 gi|307617837|gb|EFN96999.1| signal recognition particle protein [Streptococcus mitis SK321]
          Length = 523

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|170750017|ref|YP_001756277.1| signal recognition particle protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656539|gb|ACB25594.1| signal recognition particle protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 521

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 107/192 (55%), Gaps = 7/192 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  IL+VG+ G GKTT   K+++++SD    KV+LA+ DT R AA++QL + A +   + 
Sbjct: 100 PVPILMVGLQGSGKTTTTAKIARRLSDREKRKVLLASLDTRRPAAMEQLAVLAKQVGVES 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G  A  +A  A   A+    DV+++DTAGR   +  LMA   ++    K      
Sbjct: 160 LPIVAGQSAVQIAKRAMDAARLGGFDVVMLDTAGRTTVDEGLMAEAAEVKAATK------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V DA TGQ+A+     F    G TG+++T+MDG +RGG  + +      P+  +
Sbjct: 214 PHEVLLVADALTGQDAVNTARAFDQRLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLV 273

Query: 290 GVGEGINDLEPF 301
           GVGE ++ LE F
Sbjct: 274 GVGEKVDALEEF 285


>gi|219685536|ref|ZP_03540353.1| signal recognition particle protein [Borrelia garinii Far04]
 gi|219672935|gb|EED29957.1| signal recognition particle protein [Borrelia garinii Far04]
          Length = 444

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 143/284 (50%), Gaps = 18/284 (6%)

Query: 42  DDGVREELE---DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           D  + E +E   + L+ +D+ + V ++ +  ++ +  +K + V R +   S+ I  +   
Sbjct: 24  DKNISEAIEIIKNSLVDADVNLRVVRRFLNSIIEE--SKGIKVLRGIDPKSQFIKIVNDN 81

Query: 99  LSKPF---NWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           L K     +++ S  P      IL++G+ G GKTT   KLS ++     KV+L A DTFR
Sbjct: 82  LVKFLGGKSYELSLHPVNKQSYILMLGLQGSGKTTTCAKLSLRLKKENRKVLLVAADTFR 141

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           +AA++QLKI  ++            D   +   + K A+++  D +I+DT GRL   S+L
Sbjct: 142 AAAVEQLKILGNQIGVPVFSLAGEKDPIKIVKASMKFAESEFFDSVIVDTRGRLEVESLL 201

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           +  I K+  +LK      P   + V+D+  GQ A+   + F+   G T  I +K D   R
Sbjct: 202 VEEIKKIKDILK------PTETILVVDSMMGQVAVNIAKEFNENVGLTSAIFSKFDSDTR 255

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG ++       +P+ F+GVGE + DL+ F  +  ++ I G  D
Sbjct: 256 GGAVLSFKSICAVPIKFIGVGERVEDLDSFYPERIASRILGMGD 299


>gi|227549002|ref|ZP_03979051.1| signal recognition particle protein [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078912|gb|EEI16875.1| signal recognition particle protein [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 546

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 139/282 (49%), Gaps = 26/282 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  ++ +  +    DVS      Q+V+  V E +  +L   ++  N   
Sbjct: 38  LLEADVSLTVVRAFIKRVKERSLGADVSEALNPAQQVIKIVDEELTNILGGETRRLNLAK 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
           +  P VI++ G+ G GKTT+ GKL+  ++  G   ML A D  R  A+ QL+I  +R   
Sbjct: 98  TP-PTVIMLAGLQGAGKTTLAGKLANHLTKQGHTPMLVACDLQRPGAVQQLQIVGERAGV 156

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   TS D +  E+G+   D  A+A    + A   K DV+IIDTAGRL  +  LM 
Sbjct: 157 PTFAPDPGTSLDSLDHEMGTSHGDPVAVATAGIEHAVRAKNDVVIIDTAGRLGIDETLMT 216

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              + IR     D   P  VL V+DA  GQ+A+   + F      TG+++TK+DG ARGG
Sbjct: 217 Q-ARNIR-----DAVNPDEVLFVIDAMIGQDAVATAQAFADGVDFTGVVLTKLDGDARGG 270

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F   GE ++D + F     S+ I G  D
Sbjct: 271 AALSIREVTGKPILFASTGEKLDDFDIFHPDRMSSRILGMGD 312


>gi|307708829|ref|ZP_07645291.1| signal recognition particle protein [Streptococcus mitis NCTC
           12261]
 gi|307615195|gb|EFN94406.1| signal recognition particle protein [Streptococcus mitis NCTC
           12261]
          Length = 523

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQA   D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVDIVRQGLEQAQANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+     TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNTQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|285017743|ref|YP_003375454.1| signal recognition particle (srp) component with 45s rna (ffs)
           protein [Xanthomonas albilineans GPE PC73]
 gi|283472961|emb|CBA15466.1| probable signal recognition particle (srp) component with 4.5s rna
           (ffs) protein [Xanthomonas albilineans]
          Length = 458

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 147/292 (50%), Gaps = 25/292 (8%)

Query: 39  RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q ++  V +
Sbjct: 21  RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   +   N +    P ++L+ G+ G GKTT +GKL+K + +   K VM+ + D 
Sbjct: 81  ELTAVMGSAASDLNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A++    F  SE       +   A   A+   VDVL++DTAGRL  + 
Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFPSESSQQPVDIVRAAIADARKSFVDVLLVDTAGRLAIDE 199

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +MA I  +         HA   P   L V+DA TGQ+A    + F      TG+++TK 
Sbjct: 200 AMMAEIKAL---------HAAITPAETLFVVDAMTGQDAANTAKAFSDALPLTGVVLTKT 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           DG ARGG  + +      P+ F+GVGE  + L+ F     ++ I   LD G+
Sbjct: 251 DGDARGGAALSVRYITGRPIKFIGVGEKPDGLDVFHPDRLASRI---LDMGD 299


>gi|222832532|gb|EEE71009.1| predicted protein [Populus trichocarpa]
          Length = 425

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+K + +   K V+  + D +R AAI QLK  +++   DF
Sbjct: 92  PAVILMAGLQGAGKTTTSGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGVDF 151

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+       +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK      
Sbjct: 152 FPSQPDQKPVEIARAALDWARKHYHDVLIVDTAGRLGIDEAMMQEIAALHAELK------ 205

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+
Sbjct: 206 PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGAALSVRHITGRPIKFV 265

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE ++ LEPF A   +  I G  D
Sbjct: 266 GVGEKLDGLEPFYADRMAQRILGMGD 291


>gi|153954026|ref|YP_001394791.1| hypothetical protein CKL_1401 [Clostridium kluyveri DSM 555]
 gi|219854640|ref|YP_002471762.1| hypothetical protein CKR_1297 [Clostridium kluyveri NBRC 12016]
 gi|146346907|gb|EDK33443.1| Hypothetical protein CKL_1401 [Clostridium kluyveri DSM 555]
 gi|219568364|dbj|BAH06348.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 449

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 154/309 (49%), Gaps = 26/309 (8%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F   + KL+E +  +     +S + + D +RE ++  L+ +D+   V +  V+ +  K  
Sbjct: 3   FEGLASKLQETLKKLRGKGKLSEKDIKDAMRE-VKLALLEADVNYKVVRNFVKSVSEKCL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTV 127
            ++V       Q+V+    +++++ L  L         + P    +I++VG+ G GKTT+
Sbjct: 62  GEEVLKSLTPAQQVI----KIVNEELTSLMGNSESSIEYSPDGLTIIMLVGLQGSGKTTM 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+ ++     K +L A D +R AAI QL+I   +            +A  +   A  
Sbjct: 118 CGKLALQLRKKNKKPLLVACDIYRPAAIKQLQIVGKQIDIPVFSMGDKVEAVDICKGAVT 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNAL 246
            A+  K++V+IIDTAGRL  +  LM         LK++  +  P  +L V+D+ TGQ+A+
Sbjct: 178 YAKDNKLNVIIIDTAGRLQIDEELMDE-------LKQIKENINPQEILLVVDSMTGQDAV 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+      G+++TK+DG  RGG  + I      P+ F+G+GE +NDLE F     
Sbjct: 231 NVASSFNEQLNINGVVLTKLDGDTRGGAALSIRAITGKPIKFVGMGEKMNDLEVFYPDRM 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGMGD 299


>gi|225010553|ref|ZP_03701024.1| signal recognition particle protein [Flavobacteria bacterium
           MS024-3C]
 gi|225005382|gb|EEG43333.1| signal recognition particle protein [Flavobacteria bacterium
           MS024-3C]
          Length = 445

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 111/212 (52%), Gaps = 7/212 (3%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
            + +  P +IL+ G+ G GKTT  GKL+  + S      +L A D +R AAIDQL++  D
Sbjct: 93  LNLADNPSIILMAGLQGSGKTTFSGKLALYLKSKKSKNPLLVACDVYRPAAIDQLQVVGD 152

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +       ++  S+  A+A      A+A   +++IIDTAGRL  +  +MA I  + + + 
Sbjct: 153 QIGVAVYSNKEESNPVAIAQAGIAHAKANGHNLVIIDTAGRLAVDEAMMAEIANIHKAI- 211

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P   L V+DA TGQ+A+   + FH V    G+I+TK+DG  RGG  I I     
Sbjct: 212 -----TPSETLFVVDAMTGQDAVNTAKAFHDVLNFDGVILTKLDGDTRGGAAISIKSVVT 266

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+G GE +  L+ F  +  +  I G  D
Sbjct: 267 KPIKFIGTGEKMEALDVFYPERMADRILGMGD 298


>gi|300690374|ref|YP_003751369.1| signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Ralstonia solanacearum PSI07]
 gi|299077434|emb|CBJ50060.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Ralstonia solanacearum PSI07]
          Length = 479

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 8/221 (3%)

Query: 97  MPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAA 154
           +P+ +    + +   P +IL+ G+ G GKTT +GKL+K + +   K V+  + D +R AA
Sbjct: 106 LPMGRAAELNLNVQPPAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAA 165

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           I QLK  +++  ADF  S+       +A  A   A+    DVLI+DTAGRL  +  +M  
Sbjct: 166 IAQLKTVSEQVGADFFPSQPEQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQE 225

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           I  +   LK      P   L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG 
Sbjct: 226 IAALHAALK------PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGA 279

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F+GV E ++ LEPF     +  I G  D
Sbjct: 280 ALSVRHITGKPIKFVGVAEKLDGLEPFYPDRMAQRILGMGD 320


>gi|270284295|ref|ZP_05965878.2| signal recognition particle protein [Bifidobacterium gallicum DSM
           20093]
 gi|270277497|gb|EFA23351.1| signal recognition particle protein [Bifidobacterium gallicum DSM
           20093]
          Length = 542

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 153/329 (46%), Gaps = 39/329 (11%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S   +L+  F     K K   TDI       DG   E+   L+ +D+ + V +     + 
Sbjct: 6   SLTDRLSNAFKHLKSKGKLSETDI-------DGTIREIRRALLDADVSLEVVRSFTGRVR 58

Query: 72  TKRYAKDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            +    +VS      Q+V+  V++ +  +L   + +P N+     P +I++ G+ G GKT
Sbjct: 59  ERALGAEVSEALNPAQQVVKIVNDELTDILGQGVDRPINF-AKQPPTIIMLAGLQGAGKT 117

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------- 175
           T+ GKL   + D+G   +L A D  R  A+ QL++  +R        E G          
Sbjct: 118 TLAGKLGYWLKDSGHTPLLVAADLQRPNAVTQLEVVGERAGVPVYAPERGVQSDGGEAVA 177

Query: 176 ------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D   +A ++ + A+ K  D +IIDTAGRL  +  LM    +  R ++  D   
Sbjct: 178 APGQTSGDPVKVARDSIEYARRKLYDTVIIDTAGRLGVDEELM----QQARDIR--DAVQ 231

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  VL V+DA  GQ+A+R  + F+     TG++++K+DG ARGG  + +      P+ F 
Sbjct: 232 PQEVLFVIDAMIGQDAVRTAQAFNEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFA 291

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLDYGE 318
             GEG+ D E F     ++ I   LD G+
Sbjct: 292 SNGEGLKDFEVFHPDRMASRI---LDMGD 317


>gi|294661294|ref|YP_003573170.1| hypothetical protein Aasi_1773 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336445|gb|ACP21042.1| hypothetical protein Aasi_1773 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 442

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 133/274 (48%), Gaps = 13/274 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSK 101
           +E+   LI++D+   VA++I +++ T    KDV       Q     VS+ + K++   S+
Sbjct: 32  KEIRRALIQADVNYKVAKQITDDIKTNALGKDVLAAVSPGQLFTKVVSDELTKLMG--SE 89

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
             + + + +P +IL+ G+ G GKTT   KL+  +      V+L A D +R AA +QL + 
Sbjct: 90  KASINLNGKPAIILMAGLQGSGKTTFSAKLANYLKRQNKSVLLVACDIYRPAAAEQLHVL 149

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +   +        DA  +A E  + A+     V+IIDTAGR          +G M  +
Sbjct: 150 GQQIDVEVFSKVDHKDAIQIAQEGIEYAKNTHKQVVIIDTAGR------QTVDVGMMQEI 203

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            K  D   P   L V+DA  GQ+A+   + F+      G+++TK+DG  RGG  + I   
Sbjct: 204 KKLQDTVKPAETLFVVDAMVGQDAVTTAQGFYEQLHFDGIVLTKLDGDTRGGAALSIRAV 263

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ F+G GE + DL+ F     +  I G  D
Sbjct: 264 VSKPIKFIGTGEKLTDLDLFYPDRMAQRILGMGD 297


>gi|145342437|ref|XP_001416189.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576414|gb|ABO94482.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 525

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 158/318 (49%), Gaps = 32/318 (10%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW R L   F  T +  +E +  + +S      ++ +L    + SDI   +  ++ ++L
Sbjct: 218 LSWCRDLV-SFRETHIS-EESLLPLTAS------IKHKLTQKNVTSDIADLLVTEVAQKL 269

Query: 71  LTKRYAKDVSVQRVLY-DVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVG 123
           + K+ +   S+  ++Y  + E I ++L        L++  +   S RP VI  VGVNGVG
Sbjct: 270 VGKKVSTFQSLASIVYRSLEESIIRILSSAKKIDLLTEVGSARKSRRPFVIAFVGVNGVG 329

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           K+T + K+   +S     VM+AA DTFR+ A++QL+    R            D + +A 
Sbjct: 330 KSTSLSKVVHWLSQQNFSVMVAACDTFRAGAVEQLRTHCQRLDCALFERGYERDPSVIAQ 389

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A +QA  + +DV++IDTAGR+ +N  LM  + K++ V      + P   L V +A  G 
Sbjct: 390 QAIQQATRQGIDVVMIDTAGRMQDNEPLMRALAKLLSV------NLPDLTLFVGEALVGN 443

Query: 244 NALRQVEMF----HAVAGTT------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVG 292
           + + Q+  F     A+  T       G+ ++K D    + G  + +V    IP+ F+G G
Sbjct: 444 DGVSQILQFEHRLQALMQTEKKCVIDGIFLSKFDTIDNKVGTALSLVYASSIPIMFVGTG 503

Query: 293 EGINDLEPFVAKDFSAVI 310
           +   D+  F A++ + V+
Sbjct: 504 QMYKDVRTFQAENIATVL 521


>gi|119025229|ref|YP_909074.1| signal recognition particle protein [Bifidobacterium adolescentis
           ATCC 15703]
 gi|118764813|dbj|BAF38992.1| signal recognition particle protein [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 549

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 154/324 (47%), Gaps = 36/324 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTSRIRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 64  TEVSEALNPAQQVVKIVNEELTAVLGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D+G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVVSPGQT 182

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A +A + A+ K  D +IIDTAGRL  +  LM    K  R ++  D   P+ +L
Sbjct: 183 TGDPVKVARDAVELAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DAVQPNEIL 236

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG
Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           + D E F     ++ I   LD G+
Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317


>gi|289168093|ref|YP_003446362.1| signal recognition particle protein Ffh [Streptococcus mitis B6]
 gi|288907660|emb|CBJ22497.1| signal recognition particle protein Ffh [Streptococcus mitis B6]
          Length = 523

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FAGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|289740969|gb|ADD19232.1| signal recognition particle subunit srp54 [Glossina morsitans
           morsitans]
          Length = 508

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 8/226 (3%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           ELI K++ P  KP+      + +VI+ VG+ G GKTT   KL+        K  L   DT
Sbjct: 82  ELI-KLVDPGVKPYQ-PVKGKANVIMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ+K  A +    F  S    D   +A E  +  + +  +++I+DT+GR     
Sbjct: 140 FRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVEMFKREGFEMIIVDTSGRHKQEE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L     +M+ V   ++P    +++ V+DAT GQ    Q + F        +I+TK+DG 
Sbjct: 200 SLFE---EMLAVANAINPD---NIIFVMDATIGQACEAQAKAFKGKVDIGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V   + P+ F+G GE I+D+EPF  K F + + G  D
Sbjct: 254 AKGGGALSAVAATRSPIIFIGTGEHIDDMEPFKIKPFVSKLLGMGD 299


>gi|119173320|ref|XP_001239133.1| hypothetical protein CIMG_10155 [Coccidioides immitis RS]
          Length = 647

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 137/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +ED L++ ++    A ++ E    EL+ K+     S+   L    E  + K+L P S   
Sbjct: 358 MEDHLLKKNVAREAALRLCEGVEHELVGKKTGSFQSIDSALRSAMESSLRKILTPTSSLD 417

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P N   + RP+VI +VGVNGVGK+T + K+   +     KV++AA DTFR
Sbjct: 418 LLREIDAVTSPRNNQQARRPYVISIVGVNGVGKSTNLSKICFFLLQNNYKVLIAACDTFR 477

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A   A +   DV++ID
Sbjct: 478 SGAVEQLRVHA-RNLKELSEREQVGQIELYEKGYGKDAANVAKDAVAYAASNDFDVVLID 536

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +        AP  +  V +A  G +++ Q   F+   G   
Sbjct: 537 TAGRRHNDQRLMSSLEKFAKFA------APDKIFMVGEALVGTDSVMQARNFNQAFGAGR 590

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 591 SLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 633


>gi|17547530|ref|NP_520932.1| signal recognition particle protein [Ralstonia solanacearum
           GMI1000]
 gi|17429834|emb|CAD16518.1| probable gtp-binding signal recognition particle srp54, g-domain
           protein [Ralstonia solanacearum GMI1000]
          Length = 476

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 8/221 (3%)

Query: 97  MPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAA 154
           +P+ +    + +   P VIL+ G+ G GKTT +GKL+K + +   K V+  + D +R AA
Sbjct: 103 LPIGRAAELNLNVQPPAVILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAA 162

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           I QLK  +++  ADF  S+       +A  A   A+    DVLI+DTAGRL  +  +M  
Sbjct: 163 IAQLKTVSEQVGADFFPSQPEQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQE 222

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           I  +   LK      P   L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG 
Sbjct: 223 IAALHATLK------PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGA 276

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F+GV E ++ LEPF     +  I G  D
Sbjct: 277 ALSVRHITGKPIKFVGVAEKLDGLEPFYPDRMAQRILGMGD 317


>gi|299065641|emb|CBJ36813.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Ralstonia solanacearum CMR15]
          Length = 478

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 8/221 (3%)

Query: 97  MPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAA 154
           +P+ +    + +   P +IL+ G+ G GKTT +GKL+K + +   K V+  + D +R AA
Sbjct: 105 LPMGRAAELNLNVQPPAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAA 164

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           I QLK  +++  ADF  S+       +A  A   A+    DVLI+DTAGRL  +  +M  
Sbjct: 165 IAQLKTVSEQVGADFFPSQPEQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQE 224

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           I  +   LK      P   L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG 
Sbjct: 225 IAALHATLK------PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGA 278

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F+GV E ++ LEPF     +  I G  D
Sbjct: 279 ALSVRHITGKPIKFVGVAEKLDGLEPFYPDRMAQRILGMGD 319


>gi|189459673|ref|ZP_03008458.1| hypothetical protein BACCOP_00301 [Bacteroides coprocola DSM 17136]
 gi|189433632|gb|EDV02617.1| hypothetical protein BACCOP_00301 [Bacteroides coprocola DSM 17136]
          Length = 441

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 7/197 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           +   RP VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AAI+QLK+   +
Sbjct: 94  ELKGRPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIEQLKVLGQQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                 C     D   +A  A ++A+AK  D++I+DTAGRL  +  +M  I  +   +  
Sbjct: 154 IEVPVYCELDSKDPVQIALNAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIEAIKNAIN- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+D+ TGQ+A+     F+      G+++TK+DG  RGG  + I      
Sbjct: 213 -----PDETLFVVDSMTGQDAVNTAREFNERLDFNGVVLTKLDGDTRGGAALSIRTVVNK 267

Query: 285 PVYFLGVGEGINDLEPF 301
           P+ F+G GE ++ ++ F
Sbjct: 268 PIKFVGTGEKLDAIDQF 284


>gi|152989330|ref|YP_001346757.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           PA7]
 gi|150964488|gb|ABR86513.1| signal recognition particle protein [Pseudomonas aeruginosa PA7]
          Length = 457

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V ++  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNKVKERAVG 61

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLS 132
            +VS          +++   L  L    N D +     P VIL+ G+ G GKTT  GKL+
Sbjct: 62  TEVSKSLTPGQAFVKIVRAELEELMGAANEDLALSVAPPAVILMAGLQGAGKTTTAGKLA 121

Query: 133 KKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + + +   K VM+ + D +R AAI QL+  A      F  S++     A+A  A ++A+ 
Sbjct: 122 RFLKERKKKSVMVVSADVYRPAAIKQLETLASEVGVTFFPSDVSQKPVAIAEAAIREARL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +DV+I+DTAGRLH ++ +M  I ++   +K      P   L V+DA TGQ+A    + 
Sbjct: 182 KFIDVVIVDTAGRLHIDADMMDEIRQVHAAIK------PVETLFVVDAMTGQDAANTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TK+DG ARGG  + +      P+ FLG+GE    L+PF     ++ I 
Sbjct: 236 FNDALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFLGMGEKSEALDPFHPDRVASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|73662841|ref|YP_301622.1| signal recognition particle [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495356|dbj|BAE18677.1| signal recognition particle [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 455

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  M      K ML A D +R AAIDQL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAIDQLQTVGKQIDIPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +   A K A+ + +D +IIDTAGRLH +  LM  +  +  + K      
Sbjct: 161 YSEGDQVKPQQIVENAIKHAKEEHLDFVIIDTAGRLHVDEALMQELSDVKEITK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ V+DA TGQ+A+   + F      +G+ +TK+DG  RGG  + I    + P+ F+
Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDEQLEVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+ E ++ LEPF  +  ++ I G  D
Sbjct: 275 GMSEKLDGLEPFHPERMASRILGMGD 300


>gi|218283558|ref|ZP_03489548.1| hypothetical protein EUBIFOR_02138 [Eubacterium biforme DSM 3989]
 gi|218215826|gb|EEC89364.1| hypothetical protein EUBIFOR_02138 [Eubacterium biforme DSM 3989]
          Length = 472

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 155/303 (51%), Gaps = 24/303 (7%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A ESLS   +L K F + S + K      ++ + ++D ++E +   L+ +D+   V + 
Sbjct: 1   MAFESLS--ERLNKAFKNISGQGK------LTEKNMNDMLKE-VRMSLLEADVNYDVVKS 51

Query: 66  IVEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVN 120
            VE +  K   ++V  S+      V +++H  L  L    +     +     ++++VG+ 
Sbjct: 52  FVENVKEKALGQEVLDSLNPGQM-VVKIVHDELQVLLGEEDARIHFKKQGMTMVMMVGLQ 110

Query: 121 GVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEIGSDA 178
           G GKTT   K++    +    +V+L A D  R AAI+QL+        + F C    S A
Sbjct: 111 GTGKTTASAKIANYCKNKLARRVLLVACDVVRPAAIEQLQTLGKSIDVEVFTCGPETS-A 169

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
              A +A   A+ ++ D++I DTAGRLH +  LM  + +M  ++       P  +L  +D
Sbjct: 170 VETAKQALTYAKDRQKDLVIFDTAGRLHIDEALMHELQQMKELV------VPDEILLTVD 223

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQ+ +   + F+     TGLI+TKMDG ARGGGL+ +     +PV F+  GE ++DL
Sbjct: 224 AMTGQDIVTVAKEFNEQLSVTGLIVTKMDGDARGGGLLSVRSITNVPVLFVSNGEKVDDL 283

Query: 299 EPF 301
           E F
Sbjct: 284 EEF 286


>gi|219123108|ref|XP_002181873.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406474|gb|EEC46413.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 308

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 130/262 (49%), Gaps = 22/262 (8%)

Query: 44  GVREELEDLLIRSDIGVAVA-QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           G+R +LE   + S   V  A ++ +E  LTK     V + R    +S+     L  +SK 
Sbjct: 49  GIRGKLEGKKLNSLYRVQTAVRQALESTLTKMLKMHVDLLR--NTMSKRGDNSLFKMSK- 105

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                   P+VI VVG+NGVGK+T + KL+      G   +L AGDTFRS A++QLK+ A
Sbjct: 106 ------RAPYVIAVVGINGVGKSTSLAKLAYYFKQNGCSPLLVAGDTFRSGAVEQLKVHA 159

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                         D + +A  A + A  +  DV++IDTAGR+ NN  LM  +GK++   
Sbjct: 160 SCLDIPMYSQGYSKDPSIVAKAAIQHATEENHDVVLIDTAGRMQNNVPLMKALGKLV--- 216

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTTGLIMTKMDGTARGGGLIPIV 279
                + P  V+ V +A  G + L Q  MF     + G  GLI+TK D  +   G   + 
Sbjct: 217 ---TENKPDFVILVCEALVGHDGLSQFTMFKQALGIRGIDGLILTKFDTVSDKVG-AALT 272

Query: 280 VTHKI--PVYFLGVGEGINDLE 299
           +TH+   P+ F G G+  + L+
Sbjct: 273 LTHQTGAPIIFCGTGQKYHHLK 294


>gi|147919502|ref|YP_686758.1| signal recognition particle protein Srp54 [uncultured methanogenic
           archaeon RC-I]
 gi|121687852|sp|Q0W2G1|SRP54_UNCMA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|110622154|emb|CAJ37432.1| signal recognition particle [uncultured methanogenic archaeon RC-I]
          Length = 444

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 153/300 (51%), Gaps = 28/300 (9%)

Query: 28  LKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQK----IVEELLTKRYAKDV 79
           LK+ +  I +S ++D    D V ++++  +I++D+ V +  K    I    LT+     +
Sbjct: 10  LKDALRKIANSGKIDKEVIDEVVKDIQRAMIQADVNVKLVMKLSSTIKNRALTEAPPAGM 69

Query: 80  S----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +    V R++Y  +EL++  ++  + P     + +   I++VG+ G GKTT   K+++  
Sbjct: 70  NSKEHVLRIVY--TELVN--IVGKATPV----ALQSQTIMMVGLQGSGKTTTSAKIARYF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           +  GLK  +   DT+R  A DQLK   D+    F       DA A+     K+    K D
Sbjct: 122 ARKGLKPAVICADTYRPGAYDQLKQLCDKLGVGFYGEAGNKDAVAIVRNGLKEMA--KYD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I+DTAGR    + L+  + K I  L + D    H +L VLDA  GQ A  Q   F+  
Sbjct: 180 VKIVDTAGRHALETDLIQEM-KDIYGLTKFD----HKLL-VLDAAIGQQASEQARAFNDA 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G TG+++TK+DGTA+GGG +  V      + F+GVGE  +D+E F    F + + G  D
Sbjct: 234 IGITGVVITKLDGTAKGGGALSAVSDTNTSIAFIGVGETPDDMERFDPDGFISRLLGMGD 293


>gi|54194|emb|CAA34386.1| unnamed protein product [Mus musculus]
          Length = 504

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L          L+  +   
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE------ERLQVSNAIQ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 214 PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|257094573|ref|YP_003168214.1| signal recognition particle protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047097|gb|ACV36285.1| signal recognition particle protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 451

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 111/209 (53%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P +IL+ G+ G GKTT +GKL+K + +    KV++ + D +R AAI+QLK  A +  
Sbjct: 97  TQPPAIILMAGLQGSGKTTTVGKLAKMLRETQKKKVLVVSCDIYRPAAIEQLKTVAGQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           ADF  S        +A  A   A+    DVL++DTAGRL  +  +M  I ++   +K   
Sbjct: 157 ADFFPSTPTDKPVDIARNAVDWAKRHYHDVLLVDTAGRLAIDEAMMREIAELHTAIK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+     F      TG+I+TK+DG ARGG  + +      P+
Sbjct: 214 ---PIETLFVVDAMQGQDAITTARAFSETLPLTGVILTKLDGDARGGAALSVRHVTGRPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + G+GE +  LE F  +  ++ I G  D
Sbjct: 271 KYAGIGEKLTGLEAFHPERMASRILGMGD 299


>gi|301167379|emb|CBW26961.1| signal recognition particle protein [Bacteriovorax marinus SJ]
          Length = 479

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 104/189 (55%), Gaps = 5/189 (2%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCS 172
           ILVVG+NG GKTT  GKLS  +     K +L    DTFR AA DQL   A     D+  S
Sbjct: 103 ILVVGLNGQGKTTFSGKLSLHLKKKKNKKVLLVPVDTFRPAAKDQLITLAKSMDMDWFDS 162

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           ++ +    +A  A   A+  K DV+IIDTAGRLH +  LM  I ++   L + DP     
Sbjct: 163 DLSTHPKLIAESAMNFAKENKYDVVIIDTAGRLHVDVELMGQIKEVRDSLAKFDPE---- 218

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL V DA TGQ A+   + FH     TG++++KMD  ARGG  + I     +P+ ++  G
Sbjct: 219 VLMVADAMTGQEAVNVAKSFHETVNLTGVVLSKMDSDARGGAALSIRHVTGVPIKYISTG 278

Query: 293 EGINDLEPF 301
           E + DLE F
Sbjct: 279 EKMKDLELF 287


>gi|237802459|ref|YP_002887653.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis B/Jali20/OT]
 gi|255310826|ref|ZP_05353396.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis 6276]
 gi|255317126|ref|ZP_05358372.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis 6276s]
 gi|231273693|emb|CAX10471.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis B/Jali20/OT]
 gi|296435541|gb|ADH17715.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis G/9768]
 gi|296436465|gb|ADH18635.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis G/11222]
 gi|296437401|gb|ADH19562.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis G/11074]
 gi|297139900|gb|ADH96658.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis G/9301]
 gi|297748156|gb|ADI50702.1| signal recognition particle subunit Ffh/Srp54 [Chlamydia
           trachomatis D-EC]
 gi|297749036|gb|ADI51714.1| signal recognition particle subunit Ffh/Srp54 [Chlamydia
           trachomatis D-LC]
          Length = 448

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 9/204 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           P VIL+ G+ G GKTT   KL+          KV++A+ D  R +A++QL+    +T AD
Sbjct: 99  PAVILLCGLQGAGKTTTCAKLADYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGAD 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F   E G+D   +A EA + A+++  D++++DTAGRLH +  LM  +  + RV       
Sbjct: 159 FFRRE-GNDPVDMAAEAVQHAKSQGYDLVLVDTAGRLHVDDALMDELVAIARV------T 211

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           +P   L V++   GQ+A+   + F    G TG++++  DG AR G ++ +      P+ F
Sbjct: 212 SPCETLFVMNLAMGQDAVVTAKAFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312
            G GE I DL PF A+  +  I G
Sbjct: 272 EGCGEKIKDLRPFNAQSMAERILG 295


>gi|332074900|gb|EGI85372.1| signal recognition particle protein [Streptococcus pneumoniae
           GA41301]
          Length = 487

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 65  PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 122

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 123 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 176

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 177 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 236

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 237 FTGTGEKITDIETFHPDRMSSRILGMGD 264


>gi|15239909|ref|NP_199761.1| signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B)
           [Arabidopsis thaliana]
 gi|10177616|dbj|BAB10763.1| SRP54 (signal recognition particle 54 KDa) protein [Arabidopsis
           thaliana]
 gi|332008438|gb|AED95821.1| Signal recognition particle SRP54 subunit protein [Arabidopsis
           thaliana]
          Length = 497

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 143/291 (49%), Gaps = 21/291 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86
           II  + L+D + E +   L++SD+   + +       KIV  E L   + K   +++ ++
Sbjct: 22  IIDEKALNDCLNE-ITRALLQSDVSFPLVKEMQTNIKKIVNLEDLAAGHNKRRIIEQAIF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG--VGKTTVIGKLSKKMSDAGLKVML 144
             SEL  KML P    F      +P V++ VG+ G  + K  ++  +   +   G K  L
Sbjct: 81  --SELC-KMLDPGKSAFAPK-KAKPSVVMFVGLQGEVLEKPQLVPSMLIIIRRKGYKPAL 136

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
              DTFR+ A DQLK  A ++   +  S  GSD   +A E   + + +  D++I+DT+GR
Sbjct: 137 VCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGR 196

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
               + L   + ++    K      P  V+ V+D++ GQ A  Q   F        +I+T
Sbjct: 197 HKQQASLFEEMRQISEATK------PDLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIIT 250

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           KMDG A+GGG +  V   K PV F+G GE +++ E F AK F + + G  D
Sbjct: 251 KMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGNGD 301


>gi|227510448|ref|ZP_03940497.1| signal recognition particle protein Ffh [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227190100|gb|EEI70167.1| signal recognition particle protein Ffh [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 478

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 12/237 (5%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGL 140
           Q+++  V E + K +   + P N      P VI++ G+ G GKTT +GKL+ K+ ++   
Sbjct: 73  QQIVKIVDEELTKTMGQEAVPLNKS-EKIPTVIMMSGLQGAGKTTTVGKLALKLKNEQNA 131

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLI 198
           + +L A D +R AAI+QL+    +   D    ++G+D     +A    ++A+    D +I
Sbjct: 132 RPLLIADDVYRPAAIEQLQTVGQQ--VDVPVFQLGTDVDPVEIAKRGLEKAKEDHNDYVI 189

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDTAGRL  +  LM  +  + + +       P  +L V+DA TGQNA+   E F      
Sbjct: 190 IDTAGRLQIDEKLMDELSNIKKAVN------PDEILLVIDAMTGQNAVATAEGFDKTLDV 243

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ I G  D
Sbjct: 244 TGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMEDLDVFHPDRMASRILGMGD 300


>gi|163744758|ref|ZP_02152118.1| signal recognition particle protein, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161381576|gb|EDQ05985.1| signal recognition particle protein, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 499

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 135/269 (50%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+ +  K   + V+      Q+V+  V + +   L    +P     
Sbjct: 38  LLEADVSLPVARDFVKAVQDKATGQAVTKSVTPGQQVVKIVHDALIDTLKGEGEPGALKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P  IL+VG+ G GKTT   KL+K++ +  G +V++A+ D  R AA++QL I   +  
Sbjct: 98  DSPPAPILMVGLQGGGKTTTTAKLAKRLKERDGKRVLMASLDVNRPAAMEQLAILGVQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G     +A  A  QA     DV ++DTAGRL  +  LM  + K +R     D
Sbjct: 158 VDTLPIVKGESPVQIAKRAKTQAGLGGYDVYMLDTAGRLSIDEELMQQV-KAVR-----D 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ+A+   E F    G TG+++T+MDG  RGG  + +      P+
Sbjct: 212 VANPRETLLVVDGLTGQDAVHTAENFDERIGITGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F  +  +  I G  D
Sbjct: 272 KFVGLGEKMDALETFEPERIAGRILGMGD 300


>gi|281202878|gb|EFA77080.1| signal recognition particle receptor alpha subunit [Polysphondylium
           pallidum PN500]
          Length = 669

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 112/203 (55%), Gaps = 19/203 (9%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+ I+  GVNGVGK+T + K+   ++  G KVM+AA DTFRS AI+QLK  A+R + + 
Sbjct: 460 RPYTIVFSGVNGVGKSTNLAKICYWLTAHGYKVMMAACDTFRSGAIEQLKTHAERLNVEV 519

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                G DAA++A EA   A+A   DV++IDT GR+ NN  LM  + K++      + + 
Sbjct: 520 FERGYGKDAASIAGEAIDYARATNHDVVLIDTTGRMQNNEPLMRALSKLV------NQNT 573

Query: 230 PHSVLQVLDATTGQNALRQVEMFHA----VAGTT--------GLIMTKMDG-TARGGGLI 276
              VL V +A  G + + Q+  F      +A +T        G+I+TK D    + G  I
Sbjct: 574 IDLVLFVGEALVGNDGVDQLVKFDKSLSLLADSTQTKVRTIDGIILTKFDTIDDKVGAAI 633

Query: 277 PIVVTHKIPVYFLGVGEGINDLE 299
            +V +   P+ FLG G+   DL+
Sbjct: 634 SMVYSTGHPIIFLGTGQNYTDLK 656


>gi|326920725|ref|XP_003206619.1| PREDICTED: signal recognition particle 54 kDa protein-like
           [Meleagris gallopavo]
          Length = 474

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 129/259 (49%), Gaps = 13/259 (5%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILV 116
           I   V   +++E+ T     DV+++ V     +L   ++ P  K   W  +  + ++I+ 
Sbjct: 23  INEEVLNAMLKEVCTALLEADVNIKLV----KQLRENLVDPGVKA--WTPTKGKQNIIMF 76

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VG+ G GKTT   KL+      G K  L   DT+R+ A DQLK  A +    F  S    
Sbjct: 77  VGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTYRAGAFDQLKQNATKARIPFYGSYTEM 136

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P    +++ V
Sbjct: 137 DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD---NIVYV 190

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+
Sbjct: 191 MDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHID 250

Query: 297 DLEPFVAKDFSAVITGCLD 315
           D EPF  + F + + G  D
Sbjct: 251 DFEPFKTQPFISKLLGMGD 269


>gi|256847356|ref|ZP_05552802.1| signal recognition particle protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716020|gb|EEU30995.1| signal recognition particle protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 480

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 145/282 (51%), Gaps = 20/282 (7%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96
           +RE + ++   L+ +D+   V +  V+++ TK    +V       Q+++  V++ + +++
Sbjct: 28  LRETMREIRLALLEADVNFTVVKDFVKKVRTKATGAEVLKGLNPAQQIVKIVNDELTELM 87

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAI 155
              +   N    H P VI++VG+ G GKTT  GKL+ ++ +    + +  A D +R AAI
Sbjct: 88  GSEAVALNK-APHIPTVIMMVGLQGAGKTTTAGKLAYRLKNEDHARPLFIAADVYRPAAI 146

Query: 156 DQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
            QL+  AD  S D    E G+D     +  E    A+A   D +IIDTAGRL  +  LM 
Sbjct: 147 TQLQQVAD--SIDVPVFEKGTDVDPVEIVREGLAAAKANHNDYVIIDTAGRLQIDEQLMD 204

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            +  +  + +      P+ +L V+DA TGQNA+   + F      TG+++TK+DG  RGG
Sbjct: 205 ELANIKELAQ------PNEILLVVDAMTGQNAVATAQGFDDKLDVTGVVLTKLDGDTRGG 258

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F+G GE + +L+ F     ++ I G  D
Sbjct: 259 AAMSIRAVTGKPIKFVGEGEKMENLDVFHPDRMASRILGMGD 300


>gi|325971130|ref|YP_004247321.1| signal recognition particle protein [Spirochaeta sp. Buddy]
 gi|324026368|gb|ADY13127.1| signal recognition particle protein [Spirochaeta sp. Buddy]
          Length = 444

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 147/292 (50%), Gaps = 25/292 (8%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDV----SVQRVLYD 87
           I+ + + D V EE++  L+ +D+ + V ++ +    EE L ++  K V       +++YD
Sbjct: 22  ITEKNIQDAV-EEIKVALLDADVNLRVVRRFINGTMEEALGEKVLKAVDPGQQFVKIVYD 80

Query: 88  VSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
                 +M+  L    N            VIL++G+ G GKTT   KL+ ++   G + M
Sbjct: 81  ------RMVALLGDEENQKLLLKGPDTTSVILMMGLQGSGKTTTSAKLAARLKREGRRPM 134

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L A D  R AAI QL++  +         +   D + +A  A  QA+  + D+LI+DT+G
Sbjct: 135 LVAADLVRPAAILQLQVLGESVGVPVFSIQGEKDPSKVAKAALAQAKKDQRDILIVDTSG 194

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R+H +  LM  I ++   +K      P   L V D+ TGQNA+   + F    G +G+++
Sbjct: 195 RMHLDQTLMDEIQRVRDAIK------PDETLFVADSMTGQNAVAIAQEFEQKVGISGVVL 248

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +K D   RGG  + +      P+ F+GVGE ++DLEPF  +  ++ I G  D
Sbjct: 249 SKFDSDTRGGAALSLRSVVGKPIKFIGVGEKMDDLEPFYPERIASRILGMGD 300


>gi|57167721|ref|ZP_00366861.1| signal recognition particle protein [Campylobacter coli RM2228]
 gi|305433226|ref|ZP_07402382.1| signal recognition particle protein [Campylobacter coli JV20]
 gi|57020843|gb|EAL57507.1| signal recognition particle protein [Campylobacter coli RM2228]
 gi|304443927|gb|EFM36584.1| signal recognition particle protein [Campylobacter coli JV20]
          Length = 445

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 108/202 (53%), Gaps = 6/202 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+L+VG+ G GKTT   KL+  +     KV++AA D  R AA++QLK   +    D  
Sbjct: 95  PTVVLMVGLQGGGKTTSTVKLANYLKLRNKKVLIAACDLQRLAAVEQLKQLCEANELDLF 154

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E   D   +A +A ++A+    DVL++DTAGRL  +  LM  +  +  VL       P
Sbjct: 155 YIENEKDPIKVAQQALEKAKNSMADVLLVDTAGRLAIDEALMNELKAVKNVLN------P 208

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +  V DA +GQ+ ++    F+ + G TG+I++K D   +GG  + I     IP+ F+G
Sbjct: 209 DEIFYVADAMSGQDGVKTASSFNELLGITGVILSKFDADTKGGIALGITKQIGIPLRFVG 268

Query: 291 VGEGINDLEPFVAKDFSAVITG 312
           VGE I DLE F+ +     I G
Sbjct: 269 VGEKIADLEIFIPERIVNRIIG 290


>gi|229541116|ref|ZP_04430176.1| signal recognition particle protein [Bacillus coagulans 36D1]
 gi|229325536|gb|EEN91211.1| signal recognition particle protein [Bacillus coagulans 36D1]
          Length = 447

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 113/209 (54%), Gaps = 13/209 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           P VI++VG+ G GKTT  GKL+    KK +   L   L A D +R AAI QL+    +  
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRTPL---LVAADIYRPAAIKQLETLGKQLG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +A +A ++A+ +  D +IIDTAGRLH +S LM  + K I+ L    
Sbjct: 158 MPVFSLGDKISPVEIARQAIEKAKEEHHDTVIIDTAGRLHIDSELMNEL-KEIKELAH-- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  +  V+DA TGQ+A+   + F+   G TG+I+TK+DG  RGG  + I    + P+
Sbjct: 215 ---PDEIFLVVDAMTGQDAVNVAQSFNDQLGITGVILTKLDGDTRGGAALSIRAVTEKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G+GE ++ LEPF  +  ++ I G  D
Sbjct: 272 KFAGMGEKMDALEPFHPERMASRILGMGD 300


>gi|166154246|ref|YP_001654364.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis 434/Bu]
 gi|166155121|ref|YP_001653376.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|301335495|ref|ZP_07223739.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis L2tet1]
 gi|165930234|emb|CAP03719.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis 434/Bu]
 gi|165931109|emb|CAP06673.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 448

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 9/204 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           P VIL+ G+ G GKTT   KL+          KV++A+ D  R +A++QL+    +T AD
Sbjct: 99  PAVILLCGLQGAGKTTTCAKLADYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGAD 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F   E G+D   +A EA + A+++  D++++DTAGRLH +  LM  +  + RV       
Sbjct: 159 FFRRE-GNDPVDMAAEAVQHAKSQGYDLVLVDTAGRLHVDDALMDELVAIARV------T 211

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           +P   L V++   GQ+A+   + F    G TG++++  DG AR G ++ +      P+ F
Sbjct: 212 SPCETLFVMNLAMGQDAVVTAKAFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312
            G GE I DL PF A+  +  I G
Sbjct: 272 EGCGEKIKDLRPFNAQSMAERILG 295


>gi|195127379|ref|XP_002008146.1| GI13333 [Drosophila mojavensis]
 gi|193919755|gb|EDW18622.1| GI13333 [Drosophila mojavensis]
          Length = 508

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 115/226 (50%), Gaps = 8/226 (3%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           ELI K++ P  KP+      + +VI+ VG+ G GKTT   KL+        K  L   DT
Sbjct: 82  ELI-KLVDPGVKPYQ-PVKGKANVIMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ+K  A +    F  S    D   +A E     + +  +++I+DT+GR     
Sbjct: 140 FRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L     +M+ V   ++P    +++ V+DAT GQ    Q + F        +I+TK+DG 
Sbjct: 200 SLFE---EMLAVANAVNPD---NIIFVMDATIGQACEAQAKAFKEKVDIGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299


>gi|312115616|ref|YP_004013212.1| signal recognition particle protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220745|gb|ADP72113.1| signal recognition particle protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 504

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 157/306 (51%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRR--LDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
           F S S +L  GI D ++ R    D  V E + ++   LI +D+ + V +   + +  K  
Sbjct: 2   FDSLSDRL-SGIFDKLTRRGALTDSDVSEAMREVRRALIEADVALDVVKSFTDRVKEKAV 60

Query: 76  AKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V  SV   Q V+  V + + + L   ++P +   S  P  I++VG+ G GKTT   K
Sbjct: 61  GQEVVRSVTPGQMVVKIVHDELVRTLGAEAEPIDLQ-SVPPVPIMMVGLQGSGKTTTTAK 119

Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++K++++    KV++A+ DT R AA +QL++   +T  D +    G     +A  A + A
Sbjct: 120 IAKRLTERDKRKVLMASLDTRRPAAQEQLEVLGKQTGVDTLPIIKGQTPQQIATRAIQAA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DV+I+DTAGRLH +  LM    + +R     D   PH  L V D+ TGQ+A+   
Sbjct: 180 KLGGYDVVILDTAGRLHIDDELMRET-EQVR-----DIAQPHETLLVADSLTGQDAVNLA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F    G TG+++T++DG  RGG  + +      P+  LG GE ++ LE F  +  +  
Sbjct: 234 RTFDQRIGITGIVLTRIDGDGRGGAALSMRAVTGKPIKLLGTGEKLDGLEDFHPERVAGR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|91215952|ref|ZP_01252921.1| signal recognition particle protein [Psychroflexus torquis ATCC
           700755]
 gi|91185929|gb|EAS72303.1| signal recognition particle protein [Psychroflexus torquis ATCC
           700755]
          Length = 442

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 111/211 (52%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           D S  P VIL+ G+ G GKTT  GKL+  + S    + +L A D +R AAIDQL +  D+
Sbjct: 94  DLSGNPSVILMSGLQGSGKTTFSGKLANYLKSKKSKQPLLVACDVYRPAAIDQLHVVGDQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +   ++   +   +A  A   A+    +V+I+DTAGRL  + ++M  I  + + +K 
Sbjct: 154 IGVEVFSNKEEKNPVLIAEAAIAHAKQNGHNVVILDTAGRLAVDQVMMNEISDIYKAVK- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+DA TGQ+A+   + F+ V    G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDAMTGQDAVNTAKTFNDVLDFDGVILTKLDGDTRGGAAISIKSVVNK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE ++ ++ F     +  I G  D
Sbjct: 268 PIKFIGTGEKMDAIDVFYPSRMADRILGMGD 298


>gi|116492613|ref|YP_804348.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pediococcus
           pentosaceus ATCC 25745]
 gi|116102763|gb|ABJ67906.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pediococcus
           pentosaceus ATCC 25745]
          Length = 476

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 158/318 (49%), Gaps = 26/318 (8%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E L+   +L K F  T+L+ K  +T+      L D +RE +   L+ +D+   V ++
Sbjct: 1   MAFEGLT--ERLQKTF--TNLRKKGKVTEA----DLRDTMRE-IRLALLEADVNFKVVKQ 51

Query: 66  IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            V+ +  +    D+       Q+++  V++ + KM+     P N      P +I++ G+ 
Sbjct: 52  FVKTVRDQAIGSDILDGLNPAQQIVKLVNDELIKMMGTEDAPLNKS-PKIPTIIMMSGLQ 110

Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT  GKL+ K+ ++   + +L A D +R AAIDQL     +   D    + G+D  
Sbjct: 111 GAGKTTTTGKLALKLKNEQKARPLLIAADVYRPAAIDQLVQVGQQI--DVPVYQEGTDVN 168

Query: 180 A--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +     +QA   K D + IDTAGRL  +  LM  +   I+ L       P  +L V+
Sbjct: 169 PVDIVRHGLEQAAENKNDYVFIDTAGRLQIDEKLMQELAD-IKALAH-----PDEILLVV 222

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQNA+   E F+     TG+I+TK+DG  RGG  + I      P+ F+G GE + D
Sbjct: 223 DAMTGQNAVNTAEGFNEKLDITGVILTKLDGDTRGGAALSIRSVTGKPIKFVGQGEKMED 282

Query: 298 LEPFVAKDFSAVITGCLD 315
           L+ F     ++ I G  D
Sbjct: 283 LDVFHPDRMASRILGMGD 300


>gi|306827321|ref|ZP_07460608.1| signal recognition particle protein [Streptococcus pyogenes ATCC
           10782]
 gi|304430468|gb|EFM33490.1| signal recognition particle protein [Streptococcus pyogenes ATCC
           10782]
          Length = 520

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 159/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187
           L+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  +  +
Sbjct: 121 LANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+  + D ++IDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     S
Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|255348387|ref|ZP_05380394.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis 70]
 gi|255502928|ref|ZP_05381318.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis 70s]
          Length = 448

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 9/204 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           P VIL+ G+ G GKTT   KL+          KV++A+ D  R +A++QL+    +T AD
Sbjct: 99  PAVILLCGLQGAGKTTTCAKLTDYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGAD 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F   E G+D   +A EA + A+++  D++++DTAGRLH +  LM  +  + RV       
Sbjct: 159 FFRRE-GNDPVDMAAEAVQHAKSQGYDLVLVDTAGRLHVDDALMDELVAVARVT------ 211

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           +P   L V++   GQ+A+   + F    G TG++++  DG AR G ++ +      P+ F
Sbjct: 212 SPCETLFVMNLAMGQDAVVTAKAFDERLGLTGVVVSMADGDARAGAVLSVRSLLNKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312
            G GE I DL PF A+  +  I G
Sbjct: 272 EGCGEKIKDLRPFNAQSMAERILG 295


>gi|163752849|ref|ZP_02159973.1| signal recognition particle protein [Kordia algicida OT-1]
 gi|161326581|gb|EDP97906.1| signal recognition particle protein [Kordia algicida OT-1]
          Length = 443

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADR 164
           + S +P +IL+ G+ G GKTT  GKL+  + +   K  +L A D +R AAIDQL +  D+
Sbjct: 94  NLSGKPSIILMSGLQGSGKTTFSGKLANYLKNKKTKKPLLVACDVYRPAAIDQLHVVGDQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              D    +  +D  A+A      A+    +V+IIDTAGRL  +  +M  I  + + ++ 
Sbjct: 154 IKVDVYSDKGNNDPVAIAQAGIAHAKQNGHNVVIIDTAGRLAVDEAMMTEIANIHKAIE- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+D+ TGQ+A+   + F+ +    G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDILNFDGVILTKLDGDTRGGAAISIKSVVNK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +  ++ F     +  I G  D
Sbjct: 268 PIKFIGTGEKMEAIDVFYPSRMADRILGMGD 298


>gi|114777431|ref|ZP_01452428.1| Signal recognition particle GTPase [Mariprofundus ferrooxydans
           PV-1]
 gi|114552213|gb|EAU54715.1| Signal recognition particle GTPase [Mariprofundus ferrooxydans
           PV-1]
          Length = 451

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 145/288 (50%), Gaps = 21/288 (7%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD---VSELI 92
           IS   LDD +RE +   L+ +D+ + V + ++ E+  +  A    V R L     + +++
Sbjct: 22  ISESDLDDTLRE-MRLALLEADVALPVVRHLMSEV--REQALGAEVARSLQPGQVIIKIL 78

Query: 93  HKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           H +L  +   +  + D S  P V+L+ G+ G GKTT  GKL+K ++  G KV L + D  
Sbjct: 79  HDVLADVLGGQRRDLDLSKIPSVVLLCGLQGAGKTTTAGKLAKLLASQGKKVALTSVDAT 138

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AA +QL++ A +    ++     + AAA+A  A  +A      VLI+DTAGR   +  
Sbjct: 139 RPAAREQLQVLASQVDVPYIEGAG-ATAAAMAASAVNEAGRSGYHVLILDTAGRQVVDDA 197

Query: 211 LMAGI---GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           LM  I    + +R  +RL          VLDA TGQ AL   E FHA    TG I+TK D
Sbjct: 198 LMEEIREVAEQVRASERL---------LVLDAMTGQTALSIAEQFHAAVTMTGCILTKTD 248

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              RGG  + +  +  +PV ++G GE I+  E F     +  I G  D
Sbjct: 249 ADVRGGAALSVARSTGVPVRYIGTGEKIDAFEAFDPDRMAGRILGQGD 296


>gi|209521094|ref|ZP_03269824.1| signal recognition particle protein [Burkholderia sp. H160]
 gi|209498477|gb|EDZ98602.1| signal recognition particle protein [Burkholderia sp. H160]
          Length = 455

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK   ++  ADF
Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             SE       +A  A   A+    DVL++DTAGRL  + ++M  I  +   LK      
Sbjct: 164 FPSEPNQKPVDIARAAVDWAKRHYHDVLLVDTAGRLGIDEVMMQEIAALHAELK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      PV F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPVKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     ++ I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMASRILGMGD 303


>gi|300933894|ref|ZP_07149150.1| signal recognition particle protein [Corynebacterium resistens DSM
           45100]
          Length = 527

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 138/282 (48%), Gaps = 26/282 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  +  +  +     VS      Q+V+  V+E + ++L   ++  N   
Sbjct: 38  LLEADVSLPVVRGFINRVKERARGAAVSEALNPAQQVIKIVNEELQQILGGETRRLNL-A 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
            H P +I++ G+ G GKTT+ GKLSK +   G   ML A D  R  A+ QL+I  +R   
Sbjct: 97  KHPPTIIMLAGLQGAGKTTLAGKLSKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERAGV 156

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   TS D    E+G+   D   +A    ++A   + D++IIDTAGRL  + +LM 
Sbjct: 157 PVFAPEPGTSLDSHDHEMGTSKGDPIEVAQRGVEEAYRTQHDIVIIDTAGRLGIDEVLM- 215

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              K  R ++  D   P  VL V+DA  GQ+A+   E F      TG+++TK+DG ARGG
Sbjct: 216 ---KQARDIR--DAVEPDEVLFVIDAMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGG 270

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ +   GE + D + F     +  I G  D
Sbjct: 271 AALSIREVTGKPILYASTGEKLEDFDIFHPDRMANRILGMGD 312


>gi|294011041|ref|YP_003544501.1| signal recognition particle subunit SRP54 [Sphingobium japonicum
           UT26S]
 gi|292674371|dbj|BAI95889.1| signal recognition particle subunit SRP54 [Sphingobium japonicum
           UT26S]
          Length = 483

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 146/283 (51%), Gaps = 16/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIH 93
           +D VR  + ++   L+ +D+ + V ++ VE+   +    DV  SV   Q V+  VS+ + 
Sbjct: 25  EDDVRAAMREVRIALLEADVALPVVRQFVEQATERAVGSDVLRSVTPGQMVVKIVSDTLT 84

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRS 152
           + L   +     D +  P VI++VG+ G GKTT   K+++++ +   K V++A+ D  R 
Sbjct: 85  ETLGAETSDLLIDVTP-PAVIMMVGLQGSGKTTSTAKIARRLKEKERKKVLMASLDVQRP 143

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA +QL +   +T    +    G     +A  A + A+ +  DV+++DTAGRLH +  LM
Sbjct: 144 AAQEQLAVLGTQTDVATLPIVPGQQPVDIARRALQAAKLQGFDVVMLDTAGRLHVDQALM 203

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +  +  V        P  +L V+D+ TGQ+A+     F A    TG+++T+MDG ARG
Sbjct: 204 DEMKAVAEV------SNPAEILLVVDSLTGQDAVNVATSFTAQVPLTGVVLTRMDGDARG 257

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F G GE ++ +EPF     +  I G  D
Sbjct: 258 GAALSMRAVTGRPIKFAGTGEKLDAIEPFHPARVAQRILGMGD 300


>gi|167748890|ref|ZP_02421017.1| hypothetical protein ANACAC_03664 [Anaerostipes caccae DSM 14662]
 gi|317470268|ref|ZP_07929662.1| signal recognition particle protein [Anaerostipes sp. 3_2_56FAA]
 gi|167651860|gb|EDR95989.1| hypothetical protein ANACAC_03664 [Anaerostipes caccae DSM 14662]
 gi|316902241|gb|EFV24161.1| signal recognition particle protein [Anaerostipes sp. 3_2_56FAA]
          Length = 446

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 151/304 (49%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++ S  RL +       +E++  L+ +D+   V +  ++ +  +   
Sbjct: 3   FESLSEKLQNVFKNLRSKGRLTESDVKAAMKEVKRALLEADVNFKVVKTFIKAVQDRAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V E +  ++   +        +   VIL+ G+ G GKTT   K+
Sbjct: 63  QDVLNGLNPGQMVIKIVKEEMEALMGSTTTEIQLKPGNEITVILMAGLQGAGKTTTTAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G + +L A D +R AAI QL++  ++            +   +A  + + A  
Sbjct: 123 AGKYKQKGKRPLLVACDVYRPAAIKQLQVNGEKQGVPVFSMGDKMNPVDIAKASIEHAAK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DTAGRLH +  +M    ++I + + +D H   ++L V+DA TGQ+A+   + 
Sbjct: 183 NGNNIVILDTAGRLHIDEDMMT---ELIAIKQAVDVH--QTIL-VVDAMTGQDAVNVAKD 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TKMDG  RGG  + I      P+ ++G+GE ++DL+ F     ++ I 
Sbjct: 237 FNEKVGVDGVIITKMDGDTRGGAALSIRSVTGKPILYIGMGEKLDDLQQFYPDRMTSRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|315222974|ref|ZP_07864853.1| signal recognition particle protein [Streptococcus anginosus F0211]
 gi|315187924|gb|EFU21660.1| signal recognition particle protein [Streptococcus anginosus F0211]
          Length = 516

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  + G + ++ A D +R AAIDQL     +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEEGARPLMIAADIYRPAAIDQLTTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM      +R +K L  
Sbjct: 159 PVFSLGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|19074175|ref|NP_584781.1| SIGNAL RECOGNITION PARTICLE 54kDa SUBUNIT (SRP54) [Encephalitozoon
           cuniculi GB-M1]
 gi|19068817|emb|CAD25285.1| SIGNAL RECOGNITION PARTICLE 54kDa SUBUNIT (SRP54) [Encephalitozoon
           cuniculi GB-M1]
          Length = 466

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 149/292 (51%), Gaps = 16/292 (5%)

Query: 32  ITDIISSRRLDDGVR---EELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRV 84
           +++++SS   D  +     E+ + LI S++       + +EL  K    + A   +  R+
Sbjct: 13  LSNLLSSPATDQHIETAIREICNSLILSNVNPRYVSDLRDELRAKLDPGKMAPGFNKARM 72

Query: 85  LYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           + + V E +  +L P ++ +  +   R  V++ VG+ G GKTT I K +      G KV 
Sbjct: 73  VQNAVYERLVDLLDPRTESYKIE-KGRTSVVVFVGLQGSGKTTSICKYANFYKKKGYKVG 131

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           +   DTFR+ A DQ++  A +    F  S   +D   +A    ++ + ++ +++++DT+G
Sbjct: 132 IVCADTFRAGAFDQVRQNALKIKVPFFGSS-EADPVKVASAGVERFRKERFELILVDTSG 190

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R    + L   +  +IR +      +P S++ V+DA  GQ+A  Q   F        +I+
Sbjct: 191 RHTQETELFTEMKDIIREI------SPSSIVFVMDAGIGQSAEDQAMGFKRAVDVGSIIL 244

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TK+DGT + GG I  V   K P+ F+G GEG++DLE F A+ F + + G  D
Sbjct: 245 TKIDGTTKAGGAISSVAATKCPIEFVGTGEGMDDLEAFDARRFVSRMLGMGD 296


>gi|297571146|ref|YP_003696920.1| signal recognition particle protein [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931493|gb|ADH92301.1| signal recognition particle protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 513

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 12/240 (5%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           Q+V+  V++ +  +L   ++  NW     P VI++ G+ G GKTT+ GKL + + + G +
Sbjct: 72  QQVVKIVNDELISVLGGEARDINWAADGEPTVIMLAGLQGAGKTTLAGKLGRWLRENGKR 131

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLI 198
            +L A D  R  A+ QL + A +   D    E G+   D   +A    + A++   DV++
Sbjct: 132 PLLVASDLQRPNAVQQLTVVAGQAGVDVWAPEPGNGIGDPVQVAKSGVEHARSAGFDVVV 191

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL  +  LM    +  R ++  +   PH VL VLDA  GQ+A+     F    G 
Sbjct: 192 VDTAGRLGIDEELM----EQARNIR--NAVNPHEVLFVLDAMIGQDAVNTSLAFRDGVGF 245

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           TG++++K+DG ARGG  + +      PV F   GE ++  E F A   ++ I   LD G+
Sbjct: 246 TGVVLSKLDGDARGGAALSVRGVTGQPVLFASTGEKLDAFERFHADRMASRI---LDMGD 302


>gi|257461314|ref|ZP_05626411.1| signal recognition particle protein [Campylobacter gracilis RM3268]
 gi|257441342|gb|EEV16488.1| signal recognition particle protein [Campylobacter gracilis RM3268]
          Length = 446

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V L+ G+ G GK+T   KL+  +     KV++AA D  R AA++QL+   +    
Sbjct: 93  STPPTVALMTGLQGSGKSTSTIKLANYLKLRKKKVLVAACDLQRLAAVEQLRQLCEANEI 152

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           +    E  SD   +A +A  +A++   DVL++DTAGRL  +  LMA + +M + L     
Sbjct: 153 ELFFIEGESDPLKVAQKALSKAKSGLYDVLLVDTAGRLAIDEALMAQLAEMKKALN---- 208

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             PH +  V DA +GQ+ ++    F  + G TG+I++K D   +GG  + I     IP+ 
Sbjct: 209 --PHEIFYVADAMSGQDGIKTAAKFDEILGLTGVILSKFDADTKGGVALGIAQQLGIPLR 266

Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312
           F+G GE + DLE F+    +  I G
Sbjct: 267 FIGTGEKVADLEGFIPDRITGRIMG 291


>gi|86129464|ref|NP_001034366.1| signal recognition particle receptor subunit alpha [Gallus gallus]
 gi|60099127|emb|CAH65394.1| hypothetical protein RCJMB04_28a6 [Gallus gallus]
          Length = 644

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 148/302 (49%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           +R+  D V E+++D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 340 TRQNMDPVLEKMKDHLIAKNVAAEIAVQLCESVAKKLEGKVMGTFTTVTSTVKQALQEAL 399

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 400 VQILQPQRRVDVLRDVMDAQRHRRPYVVTFCGVNGVGKSTNLAKISFWLIENGFSVLIAA 459

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R +A                    G DAA +A EA   A+ + 
Sbjct: 460 CDTFRAGAVEQLRTHTRRLNALHPPESHGGRTMVQLYEKGYGKDAAGIAMEAISYARNQG 519

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      +AP  VL V +A  G  A+ Q+  F 
Sbjct: 520 FDVVLVDTAGRMQDNAPLMTALAKLIAV------NAPDLVLFVGEALVGNEAVDQLVKFN 573

Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 574 KALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 633

Query: 303 AK 304
           AK
Sbjct: 634 AK 635


>gi|94312025|ref|YP_585235.1| signal recognition particle subunit FFH/SRP54 (srp54) [Cupriavidus
           metallidurans CH34]
 gi|93355877|gb|ABF09966.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Cupriavidus metallidurans CH34]
          Length = 463

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+K + +   K V+  + D +R AAI QLK  +++   DF
Sbjct: 107 PAVILMAGLQGAGKTTTSGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGVDF 166

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+       +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK      
Sbjct: 167 FPSQPDQKPVEIARAALDWARKHYHDVLIVDTAGRLGIDEAMMQEIAALHAELK------ 220

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+
Sbjct: 221 PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGAALSVRHITGRPIKFV 280

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE ++ LEPF A   +  I G  D
Sbjct: 281 GVGEKLDGLEPFYADRMAQRILGMGD 306


>gi|332886339|gb|EGK06583.1| signal recognition particle protein [Dysgonomonas mossii DSM 22836]
          Length = 439

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 155/311 (49%), Gaps = 19/311 (6%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           ESLS   +L + F    LK +  IT+I  +  L D VR  L D    +D+    A++  E
Sbjct: 3   ESLS--NRLERSF--KILKGEGKITEINVAETLKD-VRRALLD----ADVNYKTAKQFTE 53

Query: 69  ELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKT 125
            +  K   ++V +  +    + +++H  L  L      D      P VIL+ G+ G GKT
Sbjct: 54  TVKEKAMGQNVLTAVKPEQLMVKIVHDELAALMGGTATDVHLKGNPAVILMSGLQGSGKT 113

Query: 126 TVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T  GKL+K + S  G   +L AGD +R AAI+QLKI  ++        E   +   +A  
Sbjct: 114 TFSGKLAKMLKSKKGKNPLLVAGDVYRPAAIEQLKILGEQIEVPVYWEEGSKNPVQIAQN 173

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K A+    D++I+DTAGRL  +  +M    K I  +K  D   P  +L V+D+ TGQ+
Sbjct: 174 AIKHAKQNGNDLVIVDTAGRLAIDEEMM----KEITAIK--DAVKPDEILFVVDSMTGQD 227

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   + F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F  +
Sbjct: 228 AVNTAKEFNDRLNFDGVVLTKLDGDTRGGAALSIRSVVDKPIKFVGTGEKMDALDVFHPE 287

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 288 RMADRILGMGD 298


>gi|319944603|ref|ZP_08018871.1| signal recognition particle protein [Lautropia mirabilis ATCC
           51599]
 gi|319742140|gb|EFV94559.1| signal recognition particle protein [Lautropia mirabilis ATCC
           51599]
          Length = 578

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/206 (36%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GK+SK +  +   KV+  + D +R AAIDQLK  A +   DF
Sbjct: 215 PAIILMAGLQGAGKTTTVGKISKWLRENRKKKVLTVSCDVYRPAAIDQLKTVAQQAGVDF 274

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+     A +A  A   A+    DVLI+DTAGRL  +  +M      IR+L   D   
Sbjct: 275 FPSQPDQKPADIARAAVDWAKNHYHDVLIVDTAGRLGIDQAMM----DEIRLLH--DTLH 328

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 329 PIETLFVVDAMQGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVKAITGKPIKFV 388

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE +  L+ F     +  I G  D
Sbjct: 389 GVGEKLTGLDVFHPDRMANRILGMGD 414


>gi|50748422|ref|XP_421238.1| PREDICTED: similar to Signal recognition particle 54 [Gallus
           gallus]
 gi|224051427|ref|XP_002200552.1| PREDICTED: signal recognition particle 54kDa [Taeniopygia guttata]
          Length = 504

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + ++I+ VG+ G GKTT   KL+      G K  L   DT+R+ A DQLK  A +    F
Sbjct: 100 KQNIIMFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTYRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 216 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|258593820|emb|CBE70161.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA, ffh family (fifty
           four homolog) [NC10 bacterium 'Dutch sediment']
          Length = 447

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 151/313 (48%), Gaps = 27/313 (8%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +E LS + K  +G    +   +E IT+ +   RL           L+ +D+   V +  +
Sbjct: 6   TERLSGVLKKLRGHGRLT---EENITEALREVRL----------ALLEADVNFKVVKGFI 52

Query: 68  EELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           E +  +   +DV       Q+V+  V E + ++L     P  +  S  P  I++VG++G 
Sbjct: 53  ERVRERAVGRDVLESLTPGQQVVKVVYEELVEVLGKTRAPLTYA-SDSPTTIMLVGLHGS 111

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT   KL++     G   +L A DT R AA +QL+    R     V +  GS A  + 
Sbjct: 112 GKTTTSAKLARWFVSEGRSPLLVAADTVRPAAREQLQTLG-RALGVPVYAGPGS-ALQVC 169

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            EA K A+ +  + +I+DT+GRLH +  LM  +  +           P   L V DA TG
Sbjct: 170 QEARKLAKERGQNPVILDTSGRLHIDEPLMQELVAIAAA------TGPTERLMVADAMTG 223

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+     F+A    TG I+TK+DG +RGG  + I      P+ F+GVGE  + LEPF 
Sbjct: 224 QDAVNSAVRFNADLDLTGFILTKLDGDSRGGAALSIRSVTGKPIKFIGVGEKPDALEPFH 283

Query: 303 AKDFSAVITGCLD 315
            +  ++ I G  D
Sbjct: 284 PERLASRILGMGD 296


>gi|253681736|ref|ZP_04862533.1| signal recognition particle protein [Clostridium botulinum D str.
           1873]
 gi|253561448|gb|EES90900.1| signal recognition particle protein [Clostridium botulinum D str.
           1873]
          Length = 451

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 112/203 (55%), Gaps = 6/203 (2%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VI++VG+ G GKTT+ GKL+ ++     K +L A D +R AAI QL++   +        
Sbjct: 103 VIMLVGLQGAGKTTMAGKLALQLRKNNKKPLLVACDIYRPAAIKQLQVVGSQIDIPVFSM 162

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               +   +A  + + A+  K +V+IIDTAGRLH +  LM  +  +   +K      P+ 
Sbjct: 163 GDKVNPVDIAKASIEHAKNNKNNVVIIDTAGRLHIDEALMDELENIKTSVK------PNE 216

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+D+ TGQ+A+   E F+     +G+I+TK+DG  RGG  + I      P+ ++G+G
Sbjct: 217 ILLVVDSMTGQDAVNVSETFNDKLDISGVILTKLDGDTRGGAALSIKAVTGKPIKYVGLG 276

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E +NDLE F     ++ I G  D
Sbjct: 277 EKMNDLEVFHPDRMASRILGMGD 299


>gi|218130040|ref|ZP_03458844.1| hypothetical protein BACEGG_01625 [Bacteroides eggerthii DSM 20697]
 gi|317476534|ref|ZP_07935781.1| signal recognition particle protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217987760|gb|EEC54087.1| hypothetical protein BACEGG_01625 [Bacteroides eggerthii DSM 20697]
 gi|316907277|gb|EFV28984.1| signal recognition particle protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 440

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 153/299 (51%), Gaps = 25/299 (8%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEG-ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           SE L    K+ KG         EG IT+I  +  L D VR+ L D    +D+   VA+  
Sbjct: 6   SERLERSFKILKG---------EGKITEINVAETLKD-VRKALLD----ADVNYKVAKNF 51

Query: 67  VEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVG 123
            + +  K   ++V +  +    + +++H  L  L   +    +   +P VIL+ G+ G G
Sbjct: 52  TDTVKEKALGQNVLTAVKPSQLMVKIVHDELTQLMGGETAEINIDSKPAVILMSGLQGSG 111

Query: 124 KTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT  GKL++ + +    K +L A D +R AAI+QL++ A++            +  A+A
Sbjct: 112 KTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYSEPDSKNPVAIA 171

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             A ++A+AK  D++I+DTAGRL  +  +M  I  +   +       P+ +L V+D+ TG
Sbjct: 172 QNAIQEAKAKGYDLVIVDTAGRLAVDEEMMNEIAAIKAAIN------PNEILFVVDSMTG 225

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           Q+A+   + F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F
Sbjct: 226 QDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQF 284


>gi|225710178|gb|ACO10935.1| Signal recognition particle 54 kDa protein [Caligus rogercresseyi]
          Length = 509

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 138/278 (49%), Gaps = 12/278 (4%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYDVSEL-IHKMLM 97
           +G+ +EL   L+ +D+ + +  K+ E +      +  A+ ++ ++++ +   L + K++ 
Sbjct: 29  NGMLKELCAALLEADVNIRLVAKLRENVRGVINFEEMAQGLNKRQIIKEAVYLELVKLVD 88

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P  +PF      R +VI+ VG+   GKTT   KL+      G K  L   DTFR+ A DQ
Sbjct: 89  PGVEPF-VPKKGRANVIMFVGLQDSGKTTTCTKLAWYYQKKGWKACLVCADTFRAGAYDQ 147

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LK  A +    F  S    D   +A E     + +  +++I+DT+GR +    L     +
Sbjct: 148 LKQNATKARIPFYGSYTEPDPVVIANEGVNTFKEEGFEIIIVDTSGRHYQEDALFE---E 204

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           M+ V   ++P    +++ V+DA+ GQ    Q   F        +I++K+D  A+GGG + 
Sbjct: 205 MLAVSNAVNPD---NIIFVMDASIGQACEAQSRAFKEKVDVGSVIISKLDSHAKGGGALS 261

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            V   K PV F+G GE I+D EPF  K F   + G  D
Sbjct: 262 AVAATKSPVVFIGTGEHIDDFEPFKTKPFVQKLLGMGD 299


>gi|327291942|ref|XP_003230679.1| PREDICTED: signal recognition particle 54 kDa protein-like, partial
           [Anolis carolinensis]
          Length = 425

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + ++I+ VG+ G GKTT   KL+      G K  L   DT+R+ A DQLK  A +    F
Sbjct: 21  KQNIIMFVGLQGSGKTTSCSKLAYYYQRKGWKTCLICADTYRAGAFDQLKQNATKARIPF 80

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P  
Sbjct: 81  YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAIQPD- 136

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 137 --NIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 194

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 195 GTGEHIDDFEPFKTQPFISKLLGMGD 220


>gi|306819255|ref|ZP_07452966.1| signal recognition particle protein [Mobiluncus mulieris ATCC
           35239]
 gi|307700138|ref|ZP_07637184.1| signal recognition particle protein [Mobiluncus mulieris FB024-16]
 gi|304648037|gb|EFM45351.1| signal recognition particle protein [Mobiluncus mulieris ATCC
           35239]
 gi|307614687|gb|EFN93910.1| signal recognition particle protein [Mobiluncus mulieris FB024-16]
          Length = 564

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 137/280 (48%), Gaps = 18/280 (6%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V +    ++  K Y    S      Q+++  +++ + ++L   ++ 
Sbjct: 33  EIRRALLEADVALEVVKDFTAQVKEKAYGAARSEALNPAQQIVKIINDELVEILGGEARE 92

Query: 103 FNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
            ++      P V ++VG+ G GKTT+ GKL K +     K +L A D  R  A+ QL+I 
Sbjct: 93  LHFVKPGKGPTVFMLVGLQGAGKTTLAGKLGKWLGKQDKKTLLVAADLQRPNAVTQLQIV 152

Query: 162 ADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
            ++        E G+   D   +A      A     DV+I+DTAGRL  +  LMA     
Sbjct: 153 GEQAGVSVFAPEPGNGVGDPVDVARRGLALATGSGYDVMIVDTAGRLGVDEKLMA----Q 208

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            R ++  D   P  VL VLDA  GQ+A+R    F      TG++++K+DG ARGG  + +
Sbjct: 209 ARAIR--DEVQPEEVLFVLDAMIGQDAVRTARAFQEGVDFTGVVLSKLDGDARGGAALSV 266

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
                 PV F   GEG++D E F A   ++ I   LD G+
Sbjct: 267 RGVTGKPVLFASTGEGLDDFERFHADRMASRI---LDMGD 303


>gi|300702995|ref|YP_003744597.1| signal recognition particle (srp) component with 4.5S RNA (ffs)
           [Ralstonia solanacearum CFBP2957]
 gi|299070658|emb|CBJ41953.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Ralstonia solanacearum CFBP2957]
          Length = 478

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +   K V+  + D +R AAI QLK  +++  ADF
Sbjct: 120 PAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 179

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+       +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK      
Sbjct: 180 FPSQPDQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHAALK------ 233

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+
Sbjct: 234 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGKPIKFV 293

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LEPF     +  I G  D
Sbjct: 294 GVAEKLDGLEPFYPDRMAQRILGMGD 319


>gi|269977120|ref|ZP_06184094.1| signal recognition particle protein [Mobiluncus mulieris 28-1]
 gi|269934951|gb|EEZ91511.1| signal recognition particle protein [Mobiluncus mulieris 28-1]
          Length = 524

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 137/280 (48%), Gaps = 18/280 (6%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V +    ++  K Y    S      Q+++  +++ + ++L   ++ 
Sbjct: 33  EIRRALLEADVALEVVKDFTAQVKEKAYGAARSEALNPAQQIVKIINDELVEILGGEARE 92

Query: 103 FNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
            ++      P V ++VG+ G GKTT+ GKL K +     K +L A D  R  A+ QL+I 
Sbjct: 93  LHFVKPGKGPTVFMLVGLQGAGKTTLAGKLGKWLGKQDKKTLLVAADLQRPNAVTQLQIV 152

Query: 162 ADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
            ++        E G+   D   +A      A     DV+I+DTAGRL  +  LMA     
Sbjct: 153 GEQAGVSVFAPEPGNGVGDPVDVARRGLALATGSGYDVMIVDTAGRLGVDEKLMA----Q 208

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            R ++  D   P  VL VLDA  GQ+A+R    F      TG++++K+DG ARGG  + +
Sbjct: 209 ARAIR--DEVQPEEVLFVLDAMIGQDAVRTARAFQEGVDFTGVVLSKLDGDARGGAALSV 266

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
                 PV F   GEG++D E F A   ++ I   LD G+
Sbjct: 267 RGVTGKPVLFASTGEGLDDFERFHADRMASRI---LDMGD 303


>gi|88607548|ref|YP_504956.1| signal recognition particle protein [Anaplasma phagocytophilum HZ]
 gi|88598611|gb|ABD44081.1| signal recognition particle protein [Anaplasma phagocytophilum HZ]
          Length = 449

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 19/292 (6%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           LTKGF S++L+   G  +I SS+  D  V E++   L+ +D+ + V  + +E + +K   
Sbjct: 5   LTKGF-SSALQRLSGKREI-SSKDFD-LVIEDITQALLDADVNLGVVDEFIENVKSKIVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            DV       Q V+  + E + ++L   ++    D   + P VI++VG+ GVGKTT   K
Sbjct: 62  GDVVKGVLPEQMVIKRIEECLIEVLG--NEKSALDLKGKIPAVIMMVGLQGVGKTTNTVK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ ++       ++A+ D +R AA +QLK+ AD    D +          +A  A ++A+
Sbjct: 120 VALRLKKDSKNPLVASLDVYRPAAREQLKVLADGVGIDSLPIVEEQKPLDIAKRAMREAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNALRQV 249
            K  DV+++DTAGRLH N         MI  LK +    +P  ++ V+D+  GQ+A+  V
Sbjct: 180 LKGHDVVLLDTAGRLHINQ-------DMIDELKCVKKEVSPAEIVLVVDSLMGQDAVTMV 232

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             F+   G TG I T+ DG  RGG ++ + +    P+ F+  GE   DL+ F
Sbjct: 233 RKFNEELGITGTIFTRADGDPRGGAILSMKLVAGCPIKFMSTGEKPEDLDDF 284


>gi|322712148|gb|EFZ03721.1| signal sequence receptor alpha subunit [Metarhizium anisopliae
           ARSEF 23]
          Length = 655

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 142/283 (50%), Gaps = 35/283 (12%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVS--ELIHKML 96
           RL +GV +EL          V V     E + +K + A + S+ ++L   S  +L+ ++ 
Sbjct: 379 RLCEGVEKEL----------VGVKTGNFESISSKIQTAMESSLTKMLTPTSSLDLLREID 428

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              + P       RP+VI +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++
Sbjct: 429 SITAPPATSLRKARPYVISIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVE 488

Query: 157 QLKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
           QL +   R   +    E           G DAA +A +A   A  +  DV++IDTAGR H
Sbjct: 489 QLAVHV-RNLKELTAREGGQVELYQKGYGKDAATVAKDAVSHAAQEGFDVVLIDTAGRRH 547

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT----GLI 262
           N+  LM+ + K  +  +      P  +L V +A  G +++ Q   F+A  G+     G I
Sbjct: 548 NDQRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGSVRTLDGFI 601

Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           ++K D      G L+ +V    +PV F+GVG+  +DL  F  K
Sbjct: 602 ISKCDTVGDMVGTLVSLVHATNVPVLFVGVGQHYSDLRNFSVK 644


>gi|253741984|gb|EES98841.1| SRP GTPase [Giardia intestinalis ATCC 50581]
          Length = 530

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 108/224 (48%), Gaps = 10/224 (4%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           ML P   PF     +R +VI+ VG+ G GKTT   K        G +V L   DTFR+ A
Sbjct: 88  MLSPDRPPFR-PVRNRANVIMFVGLQGAGKTTTCVKFGAYYKRKGWRVGLVCCDTFRTGA 146

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            DQLK         F  S    D   +A +  K   +   +++I+DT+GR      L   
Sbjct: 147 FDQLKQNCTAVKLPFYGSYSEKDPVQIAQDGVKHFLSLNFELIILDTSGRHRQEEALFTE 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+I      +   PH  + VLD++ GQ A  Q + F        +I+TK+DG +RGGG
Sbjct: 207 M-KLID-----NAVQPHDHVFVLDSSIGQAAYEQADAFSNAVEIGSVILTKLDGHSRGGG 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            +  V   K P+ FLG GE I DLE F    F +V+ G   YG+
Sbjct: 261 ALAAVSATKAPIVFLGTGEKIEDLEFFDPSRFVSVMLG---YGD 301


>gi|298530728|ref|ZP_07018130.1| signal recognition particle protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510102|gb|EFI34006.1| signal recognition particle protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 465

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VI++VG+ G GKTT  GKL+  +        L   D +R AAIDQL   A   +    
Sbjct: 100 PVVIMMVGLQGSGKTTSAGKLALHLKGLKYSPYLVPADVYRPAAIDQLHKLAGDLNMPAY 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S    +   +   A ++A+ K    +I DTAGRLH +  LM    +++ + ++    +P
Sbjct: 160 PSTSSDNPVDICMRALEEARQKAYTAVIFDTAGRLHIDETLMQ---ELVSIKEKC---SP 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H +L V DA TGQ+A+   + F+ +   TG+++TKM+G ARGG  + I      P+ F+G
Sbjct: 214 HEILFVADAMTGQDAVTVAQRFNDLLDITGVVLTKMEGDARGGAALSIKSITNKPIKFVG 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE + DLE F     ++ I G  D
Sbjct: 274 TGEKLTDLEVFHPDRVASRILGMGD 298


>gi|167766678|ref|ZP_02438731.1| hypothetical protein CLOSS21_01184 [Clostridium sp. SS2/1]
 gi|317497507|ref|ZP_07955826.1| signal recognition particle protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167711615|gb|EDS22194.1| hypothetical protein CLOSS21_01184 [Clostridium sp. SS2/1]
 gi|291558377|emb|CBL37177.1| signal recognition particle protein [butyrate-producing bacterium
           SSC/2]
 gi|316895190|gb|EFV17353.1| signal recognition particle protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 446

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 151/304 (49%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVR---EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++ S  RL +D V+    E++  L+ +D+   V +  ++ +  +   
Sbjct: 3   FESLSEKLQGVFKNLRSKGRLTEDDVKAAMREVKRALLEADVNFKVVKTFIKSVQERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V E +  ++            +   +IL+ G+ G GKTT   KL
Sbjct: 63  QDVLNGLNPGQMVIKIVKEEMEALMGSTMTEIQLRPGNEITIILMAGLQGAGKTTTCAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G + +L A D +R AAI QL++  ++            +   +A  + + AQ 
Sbjct: 123 AGQYKKKGKRPLLVACDVYRPAAIKQLQVNGEKVGVPVFTMGDKQNPVDIAKASVEHAQK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DTAGRLH +  +M    +++ + + +D     S+L V+DA TGQ+A+   + 
Sbjct: 183 NGNNIVILDTAGRLHIDENMMT---ELVEIKENVDVF--QSIL-VVDAMTGQDAVNVAKE 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TKMDG  RGG  + I      P+ ++G+GE + DL+ F     ++ I 
Sbjct: 237 FNEKVGVDGIIITKMDGDTRGGAALSIRSVTGKPILYVGMGEKLEDLQQFYPDRMTSRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|88706921|ref|ZP_01104620.1| signal recognition particle protein [Congregibacter litoralis KT71]
 gi|88698843|gb|EAQ95963.1| signal recognition particle protein [Congregibacter litoralis KT71]
          Length = 457

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + +  +    RL +    G   E+   L+ +D+ + V  + V  +  +   
Sbjct: 2   FQNLSERLTQSLRSVTGKARLSEDNIQGTLREVRMALLEADVALPVVTQFVNSVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  L  V   +  ++   ++  +   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  QEVMSSLSPGQAFLKIVQAELESVMGAANEGLDLS-TQPPAVILLAGLQGAGKTTSAAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K V + + D +R AAI QL+  A     DF  S +      +A  A + A+
Sbjct: 121 ARLLKERDKKKVTVVSADVYRPAAIKQLETLAAEVGVDFFPSSVDQKPVDIALAAREHAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRL  ++ +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 IQFSDVLIVDTAGRLAVDADMMAEIAALEKAV------TPVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+D  +RGG  + +      P+ FLGVGE    L+PF     ++ I
Sbjct: 235 AFGEALPLTGVVLTKVDADSRGGAALSVRQITGKPIKFLGVGEKTEALDPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|256420373|ref|YP_003121026.1| signal recognition particle protein [Chitinophaga pinensis DSM
           2588]
 gi|256035281|gb|ACU58825.1| signal recognition particle protein [Chitinophaga pinensis DSM
           2588]
          Length = 441

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 115/212 (54%), Gaps = 7/212 (3%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
            D    P +IL+ G+ G GKTT  GKL+  + +  G K +L A D +R AAIDQLK+  +
Sbjct: 93  LDVKSNPSIILIAGLQGSGKTTFSGKLANFLKTKKGKKPLLVAADIYRPAAIDQLKVLGE 152

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +   +        DA  +A  A   A+    +++IIDTAGRL  + ++M  +  +   +K
Sbjct: 153 QIGVEVYSEPENKDAVKIAQNAIAHAKQNNNNIIIIDTAGRLAVDEVMMTEVANVKAAVK 212

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P+ +L V+D+ TGQ+A+   + F+     +G+++TK+DG  RGG  + I  T +
Sbjct: 213 ------PNEILFVVDSMTGQDAVNTAKAFNERLDFSGVVLTKLDGDTRGGAALTIKYTVE 266

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+ +GE ++ L+ F  +  +  I G  D
Sbjct: 267 KPIKFVSMGEKLDTLDVFYPERMAQRILGMGD 298


>gi|331269654|ref|YP_004396146.1| signal recognition particle protein [Clostridium botulinum
           BKT015925]
 gi|329126204|gb|AEB76149.1| signal recognition particle protein [Clostridium botulinum
           BKT015925]
          Length = 451

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 113/203 (55%), Gaps = 6/203 (2%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VI++VG+ G GKTT+ GKL+ ++     K +L A D +R AAI QL++  ++        
Sbjct: 103 VIMLVGLQGAGKTTMAGKLALQLRKNNKKPLLVACDIYRPAAIKQLQVVGNQIDIPVFSM 162

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               +   +A  + + A+  K +V+IIDTAGRLH +  LM  +  +   ++      P+ 
Sbjct: 163 GDKVNPVDIAKASIEHAKNNKNNVVIIDTAGRLHIDEALMDELENIKTSVE------PNE 216

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+D+ TGQ+A+   E F+     +G+I+TK+DG  RGG  + I      P+ ++G+G
Sbjct: 217 ILLVVDSMTGQDAVNVSETFNNKLDISGVILTKLDGDTRGGAALSIKAVTGKPIKYVGLG 276

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E +NDLE F     ++ I G  D
Sbjct: 277 EKMNDLEVFHPDRMASRILGMGD 299


>gi|327190186|gb|EGE57291.1| signal recognition particle GTP-binding protein [Rhizobium etli
           CNPAF512]
          Length = 571

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT   KL+ ++S     KV++A+ DT R AA +QL+    + S D 
Sbjct: 146 PVVVMMVGLQGSGKTTTTAKLAHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQASIDT 205

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM    +M  + KR +PH 
Sbjct: 206 LPVISGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMV---EMADIKKRSNPH- 261

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              +L V D+ TGQ+A+     F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 262 --EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 319

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE +++LE F  +  +  I G  D
Sbjct: 320 GVGEKMSELEEFHPRRIADRILGMGD 345


>gi|294791388|ref|ZP_06756545.1| signal recognition particle protein [Scardovia inopinata F0304]
 gi|294457859|gb|EFG26213.1| signal recognition particle protein [Scardovia inopinata F0304]
          Length = 554

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 155/323 (47%), Gaps = 35/323 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L E   ++ S  +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FSSLTDRLTEAFKNLRSKGKLSESDIDGTIREIRRALLDADVSLTVVKSFTARVRQRALG 63

Query: 77  KDVS-----VQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           ++VS      Q+V+  V+ EL   +   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 64  EEVSQALNPAQQVVSIVNDELTDILGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 123 LGYWLKDLGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEPGVQSATSDVVSPGLTA 182

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D   +A ++ + A++K  D +IIDTAGRL  +  LM    +  R ++  D   P+ +L 
Sbjct: 183 GDPVKVARDSIEVAKSKLYDTVIIDTAGRLGVDQELM----QQARNIR--DAVHPNEILF 236

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DA  GQ+A+   + F      TG++++K+DG ARGG  + +      P+ F   GEG+
Sbjct: 237 VIDAMIGQDAVATAKAFDQGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFSSTGEGL 296

Query: 296 NDLEPFVAKDFSAVITGCLDYGE 318
            D E F     ++ I   LD G+
Sbjct: 297 KDFEVFHPDRMASRI---LDMGD 316


>gi|260654905|ref|ZP_05860393.1| signal recognition particle protein [Jonquetella anthropi E3_33 E1]
 gi|260630407|gb|EEX48601.1| signal recognition particle protein [Jonquetella anthropi E3_33 E1]
          Length = 453

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 156/300 (52%), Gaps = 25/300 (8%)

Query: 30  EGITDIISSR------RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV---- 79
           EGI D + +R       + D +RE +   L+ +D+   V + +VE +  +   ++V    
Sbjct: 10  EGIFDSLRNRGKLSENDVADSLRE-VRRALLEADVNYKVVRDLVERIRVRAVGRNVLESI 68

Query: 80  -SVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMS 136
              Q+V+  V  EL+   LM   K  N   S +P   +L+VG+ G GKTT   KL++++ 
Sbjct: 69  TPAQQVISVVFEELVA--LMGGGKS-NLKISPKPPTTVLMVGLQGSGKTTSSAKLARRIR 125

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVD 195
            +  K +L A D  R AA+ QL+I A      F+  E   +D   L  ++ K A     D
Sbjct: 126 PSH-KPLLVACDLRRPAAVKQLEILAKSAEVGFLGPENDKTDLFDLVRQSRKYAADHLQD 184

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++I DTAGRL  +  LM  + ++   ++      P  +L V+D+ +GQ AL   E FHA 
Sbjct: 185 LIIYDTAGRLAIDEELMTELDRLKSTVQ------PDEILLVVDSMSGQEALNVAETFHAR 238

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G TG+++TK+DG ARGG  + ++    +PV F GVGEGI+  E F A+  +  I G  D
Sbjct: 239 LGLTGIVLTKLDGDARGGAALAVLAATGVPVKFAGVGEGIDAFEEFDARRMAERIMGMGD 298


>gi|38234110|ref|NP_939877.1| signal recognition particle protein [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200372|emb|CAE50059.1| signal recognition particle protein [Corynebacterium diphtheriae]
          Length = 538

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 154/319 (48%), Gaps = 30/319 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ + S  ++ +     V  E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLGNALSGLRSKGKVTEADINTVAREIRLALLEADVSLPVVRGFISRIKDRALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      ++V+  V E +  +L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSKALNPAEQVIKIVDEELTGILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-----------TSADFVCSEIGS---D 177
           +K + + G   ML A D  R  A+ QL I  +R           TS D    E+G+   D
Sbjct: 121 AKHLVEQGHTPMLVACDLQRPGAVQQLTIVGERAGVPTFAPDPGTSIDSSDHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+A +   +A+  + D++I+DTAGRL  +  LM    + IR     D   P  VL V+
Sbjct: 181 PVAVAQQGIAEAKRTQHDIVIVDTAGRLGIDEALMT-QARNIR-----DAINPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F      TG+++TK+DG ARGG  + I      P+ F   GE + D
Sbjct: 235 DAMIGQDAVNTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLDY 316
            + F  +  S+ I G  D 
Sbjct: 295 FDIFHPERMSSRILGMGDM 313


>gi|13473694|ref|NP_105262.1| signal recognition particle protein [Mesorhizobium loti MAFF303099]
 gi|14024445|dbj|BAB51048.1| signal recognition particle protein [Mesorhizobium loti MAFF303099]
          Length = 532

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 114/206 (55%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT   K++K++++    KV++A+ DT R AA +QL+   ++T    
Sbjct: 100 PVVIMMVGLQGSGKTTTSAKIAKRLTERQNKKVLMASLDTRRPAAQEQLRQLGEQTKVAT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G +   +A  A + A+    DV+I+DTAGR H +  LM  +  + +V       +
Sbjct: 160 LPIIAGQNPVDIARRAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKV------SS 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+   + F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADSLTGQDAVNLAKSFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE ++ LE F  K  +  I G  D
Sbjct: 274 GTGEKMDGLEEFHPKRIADRILGMGD 299


>gi|229818302|ref|ZP_04448583.1| hypothetical protein BIFANG_03602 [Bifidobacterium angulatum DSM
           20098]
 gi|229784172|gb|EEP20286.1| hypothetical protein BIFANG_03602 [Bifidobacterium angulatum DSM
           20098]
          Length = 549

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 29/281 (10%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKML- 96
           DG   E+   L+ +D+ + V +     +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 30  DGTIREIRRALLDADVALDVVRSFTASIRERALGTEVSQSLNPAQQVVKIVNEELTSVLG 89

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             + +P N+   + P +I++ G+ G GKTT+ GKL   + D+G   +L A D  R  A+ 
Sbjct: 90  AGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVT 148

Query: 157 QLKIWADRTSADFVCSEIG----------------SDAAALAYEAFKQAQAKKVDVLIID 200
           QL++  +R        E G                 D   +A +A + A+ K  D +IID
Sbjct: 149 QLQVVGERADVPVYAPEKGVQADGGEAVMAPGQTTGDPVKVARDAVELAKQKLYDTVIID 208

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  LM    K  R ++  D   P+ +L V+DA  GQ+A++  + F      TG
Sbjct: 209 TAGRLGVDEELM----KQARDIR--DAVQPNEILFVIDAMIGQDAVQTAKAFDEGVDFTG 262

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           ++++K+DG ARGG  + +      P+ F   GEG+ D E F
Sbjct: 263 VVLSKLDGDARGGAALSVASVTGKPILFASTGEGLKDFEVF 303


>gi|157692277|ref|YP_001486739.1| signal recognition particle protein Ffh [Bacillus pumilus SAFR-032]
 gi|157681035|gb|ABV62179.1| signal recognition particle protein Ffh [Bacillus pumilus SAFR-032]
          Length = 446

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K M+ A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPMMVAADIYRPAAIQQLQTLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+ +  D +I+DTAGRLH +  LM  + K+  V      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEEHHDYVILDTAGRLHIDEELMDELQKVKEVAN---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+D+ TGQ+A+   + F+   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F  +GE ++ +EPF  +  ++ I G  D
Sbjct: 273 FAALGEKLDAIEPFHPERMASRILGMGD 300


>gi|154486611|ref|ZP_02028018.1| hypothetical protein BIFADO_00428 [Bifidobacterium adolescentis
           L2-32]
 gi|154084474|gb|EDN83519.1| hypothetical protein BIFADO_00428 [Bifidobacterium adolescentis
           L2-32]
          Length = 549

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 154/324 (47%), Gaps = 36/324 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 64  TEVSEALNPAQQVVKIVNEELTAVLGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D+G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVVSPGQT 182

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A +A + A+ K  D +IIDTAGRL  +  LM    K  R ++  D   P+ +L
Sbjct: 183 TGDPVKVARDAVEVAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DAVQPNEIL 236

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG
Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           + D E F     ++ I   LD G+
Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317


>gi|71901947|ref|ZP_00684000.1| Signal recognition particle protein [Xylella fastidiosa Ann-1]
 gi|71728288|gb|EAO30466.1| Signal recognition particle protein [Xylella fastidiosa Ann-1]
          Length = 455

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 152/291 (52%), Gaps = 17/291 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   I  +    RL ++ +RE   E+   L+ +D+ ++V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALSVVQALIERIKIRALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P VIL+ G+ G GKT+++GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELAAVMGDSASELNLNVPA-PAVILLAGLQGAGKTSMVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QL+I +++ +     S +  +   +   A   A+
Sbjct: 121 AKYLKEKRKKKVMVVSADVYRPAAIEQLRILSEQVNVLCFPSSVEQNPVDIVRAAIADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  +  +M  I  +       D   P   L V+D+ TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDQGMMDEIKAL------HDTLVPVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            F      TG+I+TK DG ARGGG + +      P+ F+G GE ++DL+ F
Sbjct: 235 AFSEALPLTGVILTKTDGDARGGGALSVRYITGRPIKFVGTGEKVDDLDVF 285


>gi|149019283|ref|ZP_01834645.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931153|gb|EDK82132.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP23-BS72]
          Length = 523

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRLAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|154498106|ref|ZP_02036484.1| hypothetical protein BACCAP_02087 [Bacteroides capillosus ATCC
           29799]
 gi|150273096|gb|EDN00253.1| hypothetical protein BACCAP_02087 [Bacteroides capillosus ATCC
           29799]
          Length = 456

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 151/304 (49%), Gaps = 26/304 (8%)

Query: 30  EGITDIISS---------RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77
           EG+T+ +S+         R  +  V+E ++++   L+ +D+   V +  V ++  +    
Sbjct: 4   EGLTEKLSNAFKKLRGKGRLTEADVKEAMKEIRMALLEADVNYKVVKDFVAKVTERAVGS 63

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           DV       Q ++  V+E +  ++   S          P V+++VG+NG GKTT   KL+
Sbjct: 64  DVLESLTPAQMIVKIVNEELTALMGGESAKLTIS-PKPPTVVMLVGLNGAGKTTNGAKLA 122

Query: 133 KKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
             M    G + +L A DTFR AAI QL++   +         +G D   +A    + A+ 
Sbjct: 123 GFMKKQNGKRPLLVACDTFRPAAIQQLEVVGGQLGVPVFQQGLG-DPVEIAKAGIEHART 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++ +DTAGRLH +  LMA + +M   +      +P  +L ++DA  GQ+A+   ++
Sbjct: 182 HGNDIVFLDTAGRLHVDDQLMAELSRMKEAV------SPTEILLIVDAMIGQDAVNAAKV 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG ARGG  + I      P+ F+G GE ++ +E F     ++ I 
Sbjct: 236 FDQTLDLTGVMLTKLDGDARGGAALSIKAVTGKPIKFIGTGEKLDQIEVFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|291166848|gb|EFE28894.1| signal recognition particle protein [Filifactor alocis ATCC 35896]
          Length = 451

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 109/209 (52%), Gaps = 8/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V+++VG+ G GKTT + K+       G   M  A D +R AAI QL++  ++   
Sbjct: 98  SKPPTVVMMVGLQGAGKTTTVAKIGHLFKKQGKVPMAIACDVYRPAAIKQLQVVGEQAGI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                E   +  ++A    ++A+    D+++IDTAGRLH +       G+++  LK++  
Sbjct: 158 TVYTEEGNKNPVSIAKNGVERAKVLGHDLVLIDTAGRLHID-------GELMDELKQIKE 210

Query: 228 HA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  +L V+D+ TGQ+A+   + F    G  G+++TK+DG  RGG  + I      P+
Sbjct: 211 QVRPTEILLVVDSMTGQDAVNVSQSFDEALGVDGIVLTKLDGDTRGGAALSIKAVTGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F  +GE + DLEPF     ++ I G  D
Sbjct: 271 KFSAIGEKLGDLEPFYPDRMASRILGMGD 299


>gi|15604743|ref|NP_219527.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis D/UW-3/CX]
 gi|3328415|gb|AAC67615.1| Signal Recognition Particle GTPase [Chlamydia trachomatis
           D/UW-3/CX]
          Length = 448

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 110/204 (53%), Gaps = 9/204 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           P VIL+ G+ G GKTT   KL+          KV++A+ D  R +A++QL+    +T AD
Sbjct: 99  PAVILLCGLQGAGKTTTCAKLADYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGAD 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F   E G+D   +A EA + A+++  D++++DTAGRLH +  LM  +  + RV       
Sbjct: 159 FFRRE-GNDPVDMAAEAVQHAKSQGYDLVLVDTAGRLHVDDALMDELVAIARV------T 211

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L V++   GQ+A+   + F    G TG++++  DG AR G ++ +      P+ F
Sbjct: 212 TPCETLFVMNLAMGQDAVVTAKAFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312
            G GE I DL PF A+  +  I G
Sbjct: 272 EGCGEKIKDLRPFNAQSMAERILG 295


>gi|322387559|ref|ZP_08061168.1| signal recognition particle protein [Streptococcus infantis ATCC
           700779]
 gi|321141426|gb|EFX36922.1| signal recognition particle protein [Streptococcus infantis ATCC
           700779]
          Length = 521

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEEDARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDELLM----NELRDVKTL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVIDAMIGQEAANVAREFNAQLEVTGIILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     ++ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMASRILGMGD 300


>gi|304316926|ref|YP_003852071.1| signal recognition particle protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778428|gb|ADL68987.1| signal recognition particle protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 446

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 16/276 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101
           +E++  L+ +D+   V ++ +  +  K   ++V       Q V+  V++ +  ++   SK
Sbjct: 33  KEVKIALLEADVNFKVVKEFINTVTEKSLGQEVMESLTPAQHVIKIVNDELTALMG--SK 90

Query: 102 PFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
               +FS +P  +I++VG+ G GKTT  GKL+  +   G   +L A D +R AAI QL++
Sbjct: 91  ESKINFSDKPPTIIMMVGLQGSGKTTTSGKLANYLKSKGKNPVLVACDIYRPAAIKQLQV 150

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                +         +    +A  A   A+    +V+IIDTAGRLH +  LM  + K I+
Sbjct: 151 VGSSINVPVFSMGDKTTPVDIAKGAVDFAKNNNYNVVIIDTAGRLHIDEELMDEL-KNIK 209

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI-V 279
                D   P+ +L V+DA TGQ+ +   E F+      G+I+TK+DG  RGG  + +  
Sbjct: 210 -----DAVNPNEILLVVDAMTGQDVVNVAESFNEKLDIDGVILTKLDGDTRGGAALSVKA 264

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           VTHK P+ F+  GE + D+E F     ++ I G  D
Sbjct: 265 VTHK-PIKFIASGEKLTDIEVFHPDRMASRILGMGD 299


>gi|300858747|ref|YP_003783730.1| signal recognition particle protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686201|gb|ADK29123.1| signal recognition particle protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206454|gb|ADL10796.1| Signal recognition particle protein (Fifty-four-like protein)
           [Corynebacterium pseudotuberculosis C231]
 gi|302331010|gb|ADL21204.1| signal recognition particle protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276696|gb|ADO26595.1| Signal recognition particle protein (Fifty-four-like protein)
           [Corynebacterium pseudotuberculosis I19]
          Length = 535

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 155/318 (48%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ + S  ++ +     V  E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLGNALSGLRSKGKVTEADINAVAREIRLALLEADVSLPVVRGFIARIKDRALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      ++V+  V+E +  +L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSKALNPAEQVIKIVNEELTTILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-----------TSADFVCSEIGS---D 177
           +K +   G   ML A D  R  A+ QL+I  +R           TS D    E+G+   D
Sbjct: 121 AKHLQSQGHTPMLVACDLQRPGAVQQLQIVGERAGVPTFAPDPGTSIDSNDHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A +  ++A+  + DV+I+DTAGRL  +  LM    + IR     D   P  VL V+
Sbjct: 181 PVGVARQGIEEAKRAQHDVVIVDTAGRLGIDETLMTQ-ARNIR-----DAIRPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+A+   E F      TG+++TK+DG ARGG  + I      P+ F   GE + D
Sbjct: 235 DSMIGQDAVNTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F  +  S+ I G  D
Sbjct: 295 FDVFHPERMSSRILGMGD 312


>gi|311063767|ref|YP_003970492.1| signal recognition particle subunit FFH/SRP54 [Bifidobacterium
           bifidum PRL2010]
 gi|310866086|gb|ADP35455.1| Ffh Signal recognition particle, subunit FFH/SRP54 [Bifidobacterium
           bifidum PRL2010]
          Length = 548

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 154/324 (47%), Gaps = 36/324 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTARIRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 64  TEVSEALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D+G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGDSVSAPGET 182

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A ++   A+ K  D +IIDTAGRL  + +LM    +  R ++  D   P+ +L
Sbjct: 183 SGDPVKVARDSIALAKQKLYDTVIIDTAGRLGVDEVLM----QQARDIR--DAVNPNEIL 236

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG
Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           + D E F     ++ I   LD G+
Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317


>gi|227875974|ref|ZP_03994097.1| signal recognition particle protein [Mobiluncus mulieris ATCC
           35243]
 gi|227843506|gb|EEJ53692.1| signal recognition particle protein [Mobiluncus mulieris ATCC
           35243]
          Length = 564

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 137/280 (48%), Gaps = 18/280 (6%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V +    ++  K Y    S      Q+++  +++ + ++L   ++ 
Sbjct: 33  EIRRALLEADVALEVVKDFTAQVKEKAYGAARSEALNPAQQIVKIINDELVEILGGEARE 92

Query: 103 FNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
            ++      P V ++VG+ G GKTT+ GKL K +     K +L A D  R  A+ QL+I 
Sbjct: 93  LHFVKPGKGPTVFMLVGLQGAGKTTLAGKLGKWLGKQDKKTLLVAADLQRPNAVTQLQIV 152

Query: 162 ADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
            ++        E G+   D   +A      A     DV+I+DTAGRL  +  LMA     
Sbjct: 153 GEQAGVSVFAPEPGNGVGDPVDVARRGLALATGSGYDVMIVDTAGRLGVDEKLMA----Q 208

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            R ++  D   P  VL VLDA  GQ+A+R    F      TG++++K+DG ARGG  + +
Sbjct: 209 ARAIR--DEVQPEEVLFVLDAMIGQDAVRTARAFQEGVDFTGVVLSKLDGDARGGAALSV 266

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
                 PV F   GEG++D E F A   ++ I   LD G+
Sbjct: 267 RGVTGKPVLFASTGEGLDDFERFHADRMASRI---LDMGD 303


>gi|194750277|ref|XP_001957554.1| GF23972 [Drosophila ananassae]
 gi|190624836|gb|EDV40360.1| GF23972 [Drosophila ananassae]
          Length = 508

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 115/226 (50%), Gaps = 8/226 (3%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           ELI K++ P  KP+      + +VI+ VG+ G GKTT   KL+        K  L   DT
Sbjct: 82  ELI-KLVDPGVKPYQ-PIKGKANVIMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ+K  A +    F  S    D   +A E     + +  +++I+DT+GR     
Sbjct: 140 FRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L     +M+ V   ++P    +++ V+DAT GQ    Q + F        +I+TK+DG 
Sbjct: 200 SLFE---EMLAVANAVNPD---NIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299


>gi|325978265|ref|YP_004287981.1| signal recognition particle subunit FFH/SRP54 protein
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325178193|emb|CBZ48237.1| Signal recognition particle subunit FFH/SRP54 protein
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 521

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 158/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q+++  V+E + ++L   S+    + S + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQIVKIVNEELTEILG--SETAELEKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187
           L+ K+  D   + ++ A D +R AAIDQLK   ++ +      ++G+D +A  +      
Sbjct: 121 LANKLIKDENARPLMIAADIYRPAAIDQLKTLGNQINVPVF--DMGTDHSAVEIVTNGLA 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+    D +IIDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QAKENHNDYVIIDTAGRLQIDEKLM----EELRDVKAL--ANPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S
Sbjct: 233 VADEFNKQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|225351180|ref|ZP_03742203.1| hypothetical protein BIFPSEUDO_02770 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158636|gb|EEG71878.1| hypothetical protein BIFPSEUDO_02770 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 549

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 146/307 (47%), Gaps = 33/307 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L   + +P N+   + P VI++ G+ G GKTT+ GK
Sbjct: 64  TEVSQALNPAQQVVKIVNEELTAVLGAGVDRPLNF-AKNPPTVIMLAGLQGAGKTTLAGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D+G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVASPGLT 182

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A +A   A+ K  D +IIDTAGRL  +  LM    K  R ++  D   P+ +L
Sbjct: 183 TGDPVKVARDAVALAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DAVQPNEIL 236

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG
Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296

Query: 295 INDLEPF 301
           + D E F
Sbjct: 297 LKDFEVF 303


>gi|297620933|ref|YP_003709070.1| Signal recognition 54 kDa protein Ffh [Waddlia chondrophila WSU
           86-1044]
 gi|297376234|gb|ADI38064.1| Signal recognition 54 kDa protein Ffh [Waddlia chondrophila WSU
           86-1044]
          Length = 442

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 141/297 (47%), Gaps = 31/297 (10%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
           +E I + +S  RL           L+ +D+  +VA+ +V+ L  K          VL  +
Sbjct: 24  EENIAEAVSEVRL----------ALLEADVNYSVAKVLVKRLKEKSLG-----DAVLKSI 68

Query: 89  S------ELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDA 138
           S      +++H  L+ L   +    D   +P V+++ G+ G GKTT   KL+   K    
Sbjct: 69  SPGQQFIKIVHDELIELMGGEEAPLDLKSKPAVVMMCGLQGSGKTTQCAKLANYLKKQKK 128

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             + +LAA D  R AAI+QLK    +           +    +A  A ++A+ +  D+LI
Sbjct: 129 CRQPLLAACDLQRPAAIEQLKTLGGKIGVPVFSIPNENSPVKVAKAALERARQEGFDLLI 188

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRLH +  LM  + ++ +  K      PH +L V +A TGQ+A+     F+     
Sbjct: 189 LDTAGRLHIDDELMDQLQQIKQATK------PHEILFVANAATGQDAVTVASEFNQKVEV 242

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG I+T +D   RGG  I I      P+ F GVGE I+D++PF     +  I G  D
Sbjct: 243 TGTILTMLDSNTRGGAAISIREVTGKPLKFEGVGEKIDDIQPFNPNSMADRILGMGD 299


>gi|288905279|ref|YP_003430501.1| signal recognition particle protein [Streptococcus gallolyticus
           UCN34]
 gi|288732005|emb|CBI13570.1| signal recognition particle protein [Streptococcus gallolyticus
           UCN34]
          Length = 521

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 158/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q+++  V+E + ++L   S+    + S + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQIVKIVNEELTEILG--SETAELEKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187
           L+ K+  D   + ++ A D +R AAIDQLK   ++ +      ++G+D +A  +      
Sbjct: 121 LANKLIKDENARPLMIAADIYRPAAIDQLKTLGNQINVPVF--DMGTDHSAVEIVTNGLA 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+    D +IIDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QAKENHNDYVIIDTAGRLQIDEKLM----EELRDVKAL--ANPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S
Sbjct: 233 VADEFNKQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|108804225|ref|YP_644162.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765468|gb|ABG04350.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rubrobacter
           xylanophilus DSM 9941]
          Length = 443

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 12/276 (4%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPL 99
           V  E+   L+ +D+   V ++ V  +  +    +VS      Q+V+  V+E +  ++   
Sbjct: 30  VTREIRLALLEADVNYNVVKEFVGRVRERATGAEVSRALSPGQQVVKIVNEELANLMGGS 89

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           +   ++  S  P V+++ G+NG GKTT  GKL+  +   G    L A DT+R AA+DQL+
Sbjct: 90  AHKLSY-ASRPPTVVMLAGLNGHGKTTAAGKLALFVRKQGKNPFLVACDTYRPAAVDQLR 148

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
                           +    +A    + A+    D +I+DTAGR   ++ +M  +G++ 
Sbjct: 149 QIGRELGVPVYDEGTEAPPEEIAERGVRAARDGGYDFVIVDTAGRQVVDTEMMEELGRVR 208

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           R  +      PHSVL VLD  TGQ A+   + F   A   G+I+TK+DG ARGG  + +V
Sbjct: 209 RACR------PHSVLLVLDVVTGQTAVEVAQAFQEYADFDGMILTKLDGDARGGAALSVV 262

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                P+ F   GE +++ + F     +  I G  D
Sbjct: 263 SVTGRPIKFASEGEKMSEFDYFYPDRMAGRILGMGD 298


>gi|154151417|ref|YP_001405035.1| signal recognition particle protein Srp54 [Candidatus Methanoregula
           boonei 6A8]
 gi|153999969|gb|ABS56392.1| GTP-binding signal recognition particle SRP54, G- domain
           [Methanoregula boonei 6A8]
          Length = 441

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 124/259 (47%), Gaps = 16/259 (6%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           D+  A+  + ++E L K       V R++Y   EL+  +        + D    P VIL+
Sbjct: 50  DLSKAIRTRSLDEELPKNTNVREHVLRIVY--QELVRLVYA------SADLKLEPQVILM 101

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
            G+ G GKTT   K+++     G+KV +   DTFR  A DQL     + +     +   +
Sbjct: 102 AGLQGSGKTTTTAKIARYFQKKGMKVGVICADTFRPGAYDQLSTLCAKINVPCFGNPKVT 161

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           DA  +  E       K  +V+I+DT GR      L+  I  +  + K     A H  L V
Sbjct: 162 DARQIVREGL--VAVKDQEVIIVDTQGRHALEPDLIQEIIDLNALTK-----ASHRWL-V 213

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DA  GQ A  Q + FH   G  G+I+TKMDGTA+GGG +  V   K  + F+G GE I 
Sbjct: 214 IDAALGQQASEQAKRFHEAIGIDGVIITKMDGTAKGGGALSAVAETKSGIVFIGAGETIE 273

Query: 297 DLEPFVAKDFSAVITGCLD 315
           DLE F A  F + + G  D
Sbjct: 274 DLERFDANGFISRLLGMGD 292


>gi|291459095|ref|ZP_06598485.1| signal recognition particle protein [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291418349|gb|EFE92068.1| signal recognition particle protein [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 458

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 144/306 (47%), Gaps = 29/306 (9%)

Query: 30  EGITDIISS---------RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77
           E +TD +S+         R  +D V   L ++   L+ +D+   + +    ++  K   +
Sbjct: 4   ENLTDRLSNIFSGLSGKGRLTEDDVNAALREIRMALLEADVNFKLVKDFTAKVKEKAVGE 63

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           DV       Q V+  V+E + +M+   +            VI++VG+ G GKTT   KL+
Sbjct: 64  DVMHSLTPAQMVVKIVNEELTEMMGSETTEIRLRPQSEISVIMMVGLQGAGKTTSAAKLA 123

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            K      K +L A D +R AAIDQL++ A++    F           +A  + + A+ +
Sbjct: 124 GKFKKQHRKPLLVACDVYRPAAIDQLRVNAEKQEVPFFSLGDKLSPVEIARRSLEYAKEQ 183

Query: 193 KVDVLIIDTAGRLHNNSILM---AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +++IIDTAGRL  +  LM     I K +RV          S+L V DA TGQ A+   
Sbjct: 184 GQNLVIIDTAGRLQIDERLMKELQDIKKAVRV--------DWSILTV-DAMTGQEAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F    G  G+I+TK DG  RGG  + I      P+ +LG+GE ++DLE F     +  
Sbjct: 235 ESFSEKVGIDGVILTKCDGDTRGGAALSIRAMCGKPILYLGMGEKLSDLEQFYPDRMAGR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|120403173|ref|YP_953002.1| signal recognition particle protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955991|gb|ABM12996.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium vanbaalenii PYR-1]
          Length = 522

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 150/317 (47%), Gaps = 29/317 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ +    RL D        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTGALSGLRGKGRLTDADIDATAREIRLALLEADVSLPVVRAFISRIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKIVNEELIGILGGETRQLAF-ARNPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-------------SDA 178
           +K +   G   +L A D  R  A++QL+I  +R          G              D 
Sbjct: 121 AKWLKGQGHTPLLVACDLQRPGAVNQLQIVGERAGVSVFAPHPGVSPDGATIEQMTSGDP 180

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            ++A     +A++K  DV+I+DTAGRL  ++ LMA     IR     D   P  VL VLD
Sbjct: 181 VSVAAAGLAEARSKHYDVVIVDTAGRLGIDAELMA-QAAAIR-----DAVNPDEVLFVLD 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+   + F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D 
Sbjct: 235 AMIGQDAVTTADAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASAGEKLEDF 294

Query: 299 EPFVAKDFSAVITGCLD 315
           + F     ++ I G  D
Sbjct: 295 DVFHPDRMASRILGMGD 311


>gi|88811739|ref|ZP_01126993.1| 45S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Nitrococcus mobilis
           Nb-231]
 gi|88791130|gb|EAR22243.1| 45S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Nitrococcus mobilis
           Nb-231]
          Length = 458

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 107/209 (51%), Gaps = 13/209 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V++V G+ G GKTT + KL +  +     KV+  + D +R AAI+QL+  A      F
Sbjct: 100 PAVVMVAGLQGSGKTTSLAKLGRWLLQHQKKKVLTVSLDVYRPAAIEQLQRLARDVEIGF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             ++   D    A  A + A+    DVL++DTAGRLH +  +M  + ++         HA
Sbjct: 160 FPTQASDDPVRAASAALEYARNHYYDVLLLDTAGRLHVDQAMMDEVRRI---------HA 210

Query: 230 ---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D+ TGQ+A    + F      TG+I+TK DG ARGG  + I      P+
Sbjct: 211 AAQPVETLFVVDSMTGQDAANTAKAFDEALPLTGIILTKTDGDARGGAALSIRYVTGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+GVGE  + LEPF     ++ I G  D
Sbjct: 271 KFIGVGEKTDALEPFYPDRIASRILGMGD 299


>gi|294948604|ref|XP_002785803.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
 gi|239899911|gb|EER17599.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
          Length = 506

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 152/317 (47%), Gaps = 27/317 (8%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           ++S+  S +R L K  +S + +  E + + +          +E+   L+++D+ V    K
Sbjct: 6   LSSQLTSALRSLQKAASSLNEEDDEPLEECL----------KEIAKALLQADVNVKYVSK 55

Query: 66  IVEELLT--KRYA-----KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           + + + T  K Y      +  +V+++++D  EL+ K+L P   P       R +V++ VG
Sbjct: 56  LRQSIRTQMKLYEGAAINRHKTVRKLVFD--ELV-KLLTPSRAPRTLT-KGRSNVVMFVG 111

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT   K +      G KV L   DTFR+ A DQL+  A +    F  S   +D 
Sbjct: 112 LQGSGKTTSCTKYALYYQRRGWKVALVCADTFRAGAFDQLRQNATKALIPFYGSHTITDP 171

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A E  +  + ++ D++I+DT+GR      L   + ++   +K      P  V+ V+D
Sbjct: 172 VQVASEGVELFKEERYDLIIVDTSGRHKQELALFDEMKQVSEAVK------PDDVIFVMD 225

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +  GQ    Q   F        +I+TK+DG A+GGG +  V     P+ F+G GE ++D 
Sbjct: 226 SHIGQACSAQAAAFSNAVDVGSVIITKLDGHAKGGGALSAVAATDSPIIFIGTGEHLDDF 285

Query: 299 EPFVAKDFSAVITGCLD 315
           E F  K F   + G  D
Sbjct: 286 ERFEVKGFVGRLLGIGD 302


>gi|195376317|ref|XP_002046943.1| GJ13160 [Drosophila virilis]
 gi|194154101|gb|EDW69285.1| GJ13160 [Drosophila virilis]
          Length = 508

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 8/226 (3%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           ELI K++ P  KP+      + +VI+ VG+ G GKTT   KL+        K  L   DT
Sbjct: 82  ELI-KLVDPGVKPYQ-PVKGKANVIMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ+K  A +    F  S    D   +A E     + +  +++I+DT+GR     
Sbjct: 140 FRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L         +L   +  +P +++ V+DAT GQ    Q + F        +I+TK+DG 
Sbjct: 200 SLFE------EMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKEKVDIGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299


>gi|313236259|emb|CBY11581.1| unnamed protein product [Oikopleura dioica]
          Length = 520

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 138/291 (47%), Gaps = 29/291 (9%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L K        L E   +I   ++L DGV++++ DL    +IG           L KR  
Sbjct: 28  LKKCLKDVQSALLEADVNIKLVKQLTDGVKKQI-DL---DNIGTG---------LNKRRV 74

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKM 135
              +V + L  + +       P  KP  W  +  R  VI+ VG+ G GKTT   KL+   
Sbjct: 75  IQTAVYKELCRICD-------PGVKP--WKPTKGRSSVIMFVGLQGSGKTTSCIKLAYHY 125

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G K  +   DTFR+ A DQ+K    +    F  S    D A +AY+  +  + +K D
Sbjct: 126 QKKGWKCAVVCADTFRAGAYDQVKQNCTKARIPFYGSLTEPDPAVIAYDGVETFKKEKFD 185

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++I+DT+GR      L     +M++V   ++   P +++ V+DA+ GQ    Q + F   
Sbjct: 186 IIIVDTSGRHKQEDSLFE---EMLQVNNAVE---PDNIIFVMDASIGQACESQAKAFKDQ 239

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                +I+TK+D  A+GGG +  +   + P+ F+G GE I++LEPF    F
Sbjct: 240 VDVGSVIITKLDSHAKGGGALSAIAATQSPIVFIGTGEHIDELEPFETTKF 290


>gi|289644822|ref|ZP_06476875.1| signal recognition particle protein [Frankia symbiont of Datisca
           glomerata]
 gi|289505378|gb|EFD26424.1| signal recognition particle protein [Frankia symbiont of Datisca
           glomerata]
          Length = 530

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 155/308 (50%), Gaps = 22/308 (7%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L K F+S   K +    DI ++ R       E+   L+ +D+ + V +  V  +  +  
Sbjct: 8   RLDKAFSSLRGKGRLSEADISATAR-------EIRVALLEADVALPVVRAFVGAVRERAR 60

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++VS      Q+V+  V++ +  +L   +    +  +  P VIL+ G+ G GKTT+ GK
Sbjct: 61  GEEVSTSLNPAQQVIKIVNQELVTILGGGTTTLRFARTP-PTVILLAGLQGTGKTTLAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L + + + G   +L A D  R  A+ QL++ A +   D    E G+   D  A+A  A +
Sbjct: 120 LGRWLKEQGHTPLLVAADLQRPNAVTQLQVVAGQAGVDVYAPEPGNGVGDPVAVARAAVE 179

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ +  DV+++DTAGRL  ++ +M      IR     D  +P  +L V+DA  GQ+A+ 
Sbjct: 180 HARRRLHDVVVVDTAGRLGVDADMMRQAAD-IR-----DVTSPDEILFVVDAMIGQDAVT 233

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F    G TG+++TK+DG ARGG  + +      P+ F   GE ++D + F  +  +
Sbjct: 234 TAQAFADGVGFTGVVLTKLDGDARGGAALSVAHLTGRPIMFASTGEALDDFDVFHPERMA 293

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 294 SRILGMGD 301


>gi|254292886|ref|YP_003058909.1| signal recognition particle protein [Hirschia baltica ATCC 49814]
 gi|254041417|gb|ACT58212.1| signal recognition particle protein [Hirschia baltica ATCC 49814]
          Length = 501

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 146/274 (53%), Gaps = 12/274 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V ++ + ++  K   +DV  SV   Q+V+  V++ + +ML    + 
Sbjct: 33  EIRVALLEADVALDVVKQFIADIKPKAVGEDVIRSVKPGQQVIKIVNDGLVEMLGGNEEA 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIW 161
                 + P VI++ G+ G GKTT  GKL++++ +   K V++A+ D +R AA+ QLK+ 
Sbjct: 93  QGLRIDNIPAVIMMAGLQGSGKTTTTGKLARRLKNHDRKKVLMASLDVYRPAAMHQLKVL 152

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            ++   D +    G     +A  A   A+    DV+I+DTAGR   +  +M   G+  +V
Sbjct: 153 GEQIEVDTLPITDGQMPVDIAKRAVNAAKLGGYDVVILDTAGRTTLDEQMM---GEAAQV 209

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            +  +P    ++L V DA TGQ+A+     F+     TGLI+T+MDG  RGG  + +   
Sbjct: 210 AEFANP--AETIL-VADALTGQDAVETARRFNDRLKLTGLILTRMDGDGRGGAALSMRAV 266

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             +P+ FLG GE  + LE F A+  +  I G  D
Sbjct: 267 TGLPIKFLGTGEKSDGLEVFDARRIAGRILGQGD 300


>gi|83944830|ref|ZP_00957196.1| signal recognition particle protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851612|gb|EAP89467.1| signal recognition particle protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 515

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 150/289 (51%), Gaps = 18/289 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELLTKRYAKDVSV-QRVLYDVSE 90
           +S + +D  +RE +   L+ +D+ +   +    K+ E+ + +   + VS  Q+V+  V +
Sbjct: 22  LSEKDVDAALRE-IRVALLEADVALPAVKDFTAKVREKAIGEEVIRSVSPGQQVIKIVHD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGD 148
            + ++L    +P     +  P V IL+ G+ G GKTT   KL+K++S+    KV++A+ D
Sbjct: 81  GLVELLGGEGEPEGLTLTGEPPVAILMAGLQGSGKTTTTAKLAKRISEREKKKVLVASLD 140

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEI--GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
           T R AA++QL   A++  A   C  I  G  A  +A  A    + +  DV+I+DTAGR  
Sbjct: 141 TRRPAAMEQLAQMAEK--AGVACLPIVAGQSAVEIAKRAMSAGRLQGYDVVILDTAGRTS 198

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  +M    K+  V +      P   L V D+ TGQ+A+   + F      TGL++T+M
Sbjct: 199 IDEEMMGEAAKIAEVAR------PRETLLVADSLTGQDAVETAKRFDERLKLTGLVLTRM 252

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + +     +P+ FLGV E ++ L+ F AK  +  I G  D
Sbjct: 253 DGDGRGGAALSMRWVTGLPIKFLGVSEKVDGLDAFDAKRLAGRILGRGD 301


>gi|298373234|ref|ZP_06983223.1| signal recognition particle protein [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274286|gb|EFI15838.1| signal recognition particle protein [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 440

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 147/294 (50%), Gaps = 15/294 (5%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRV 84
           LK +  IT+I  +  L D VR+ L D    +D+    A+   +E+  K    +V +  + 
Sbjct: 16  LKGQGKITEINVAETLKD-VRKALLD----ADVNYKTAKTFTDEVKNKALGMNVLTAIKP 70

Query: 85  LYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLK 141
              + +++H  L  L  ++    +    P V+L+ G+ G GKTT  GKL+  + S  G  
Sbjct: 71  NELMVKIVHDELAALMGNEHTELNLKGSPAVVLMSGLQGSGKTTFSGKLANMLKSKRGRH 130

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            +L A D +R AAI+QLK    + +      E  ++   +A  A K A+    D++IIDT
Sbjct: 131 PLLVACDVYRPAAIEQLKTLGSQINVPVYTEEGNNNPVGIAENAIKHAKKNGNDIVIIDT 190

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL  +  +M  I  +   +      +P  +L V+DA TGQ+A+   + F+      G+
Sbjct: 191 AGRLAVDEQMMTEIANIKAAV------SPQEILFVVDAMTGQDAVNTAKAFNDRLNFDGV 244

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++TK+DG  RGG  I I      P+ F+G+GE ++ ++ F  K  +  I G  D
Sbjct: 245 VLTKLDGDTRGGAAISIRSVVDKPIKFVGIGEKLDAIDVFYPKRMADRILGMGD 298


>gi|253997293|ref|YP_003049357.1| signal recognition particle protein [Methylotenera mobilis JLW8]
 gi|253983972|gb|ACT48830.1| signal recognition particle protein [Methylotenera mobilis JLW8]
          Length = 454

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 141/285 (49%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIH 93
           ++   + D +RE +   L+ +D+ + V +  +  +  +   KDV +Q +     V E+++
Sbjct: 22  LTEENIADAMRE-VRMALLEADVALPVVKDFIAAVKARAQGKDV-LQSLTPGQAVIEVVN 79

Query: 94  KMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
             L+ L    N   +     P +IL+ G+ G GKTT   KL+K + +   KV+LA+ D +
Sbjct: 80  DELIALMGKANEGLNLAAVPPAIILMAGLQGSGKTTTSAKLAKLLKEQKKKVLLASADVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI+QLK  A +   +   S        +A      A+    DV+I DTAGRL  +  
Sbjct: 140 RPAAIEQLKTLAQQLEIECFDSNASQAPLDIATATLDYAKRGYYDVVIFDTAGRLGIDEA 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +MA I  +   L       P   L V+DA  GQ+A+   + F      TG+I+TK+DG +
Sbjct: 200 MMAEIKALHAYLN------PIETLFVVDAMQGQDAINTAKAFGDTLPLTGVILTKLDGDS 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + +      P+ ++GV E ++ LEPF     ++ I G  D
Sbjct: 254 RGGAALSVRHVTGKPIKYIGVSEKVDGLEPFYPDRMASRILGMGD 298


>gi|225630810|ref|YP_002727601.1| Signal recognition particle GTPase [Wolbachia sp. wRi]
 gi|225592791|gb|ACN95810.1| Signal recognition particle GTPase [Wolbachia sp. wRi]
          Length = 447

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 151/294 (51%), Gaps = 15/294 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+   S   KL+     IIS    +  +RE +   LI +D+ + VA+K + ++  
Sbjct: 1   MFKSLTESLNSVFSKLRG--KSIISEDDFNLAMRE-IRIALIEADVSLEVAKKFINDIKD 57

Query: 73  K----RYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K    +  K VS  Q ++  V + +  +L       N      P VI++VG+ G GKTT 
Sbjct: 58  KVIGEKVIKSVSPAQMIIKIVQDNLVAVLGSEKSDLNLAVKP-PAVIMMVGLQGAGKTTT 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+ K+     KVMLA+ D +R AA  QL++   +     +   I      +   A  
Sbjct: 117 SGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDVQTLPVVIDEKPITITKRALA 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRLH ++ +M      ++ +K +   +P  V+ V DA  GQ+A+ 
Sbjct: 177 AAKNDNYDVLILDTAGRLHIDNNMM----NELKAVKEI--ASPAEVILVADAMIGQDAVN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             + F+ V G TG+I+T++DG ARGG  + + +    P+ F+  GE ++DL+ F
Sbjct: 231 IAKSFNEVIGVTGIILTRVDGDARGGAALSMKMIADCPIKFIACGEKLSDLDDF 284


>gi|205373346|ref|ZP_03226150.1| signal recognition particle protein [Bacillus coahuilensis m4-4]
          Length = 382

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKLS  +      K +L A D +R AAI QL+    + +   
Sbjct: 36  PTVVMMVGLQGAGKTTTTGKLSNLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLNLPV 95

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +A +  ++A+    D ++IDTAGRLH +  LM  + K I+ L +     
Sbjct: 96  FSMGDQVSPVEIAKKGIEKAKEDHQDYVLIDTAGRLHVDENLMDEL-KQIKELSK----- 149

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +  V+DA TGQ+A+   + F    G TG+++TK+DG  RGG  + I    + P+ F+
Sbjct: 150 PDEIFLVVDAMTGQDAVNVAKSFDDALGITGVVLTKLDGDTRGGAALSIRSVTEKPIKFV 209

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+GE ++ LEPF  +  +  I G  D
Sbjct: 210 GLGEKMDALEPFHPERMAQRILGMGD 235


>gi|194014310|ref|ZP_03052927.1| signal recognition particle protein [Bacillus pumilus ATCC 7061]
 gi|194013336|gb|EDW22901.1| signal recognition particle protein [Bacillus pumilus ATCC 7061]
          Length = 446

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 113/208 (54%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      + M+ A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRQPMMVAADIYRPAAIQQLQTLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+ +  D +I+DTAGRLH +  LM  + K+  V      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEEHHDYVILDTAGRLHIDEELMDELQKVKEV------ 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            +P  +  V+D+ TGQ+A+   + F+   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 213 ASPEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F  +GE ++ +EPF  +  ++ I G  D
Sbjct: 273 FAALGEKLDAIEPFHPERMASRILGMGD 300


>gi|296446373|ref|ZP_06888318.1| signal recognition particle protein [Methylosinus trichosporium
           OB3b]
 gi|296256146|gb|EFH03228.1| signal recognition particle protein [Methylosinus trichosporium
           OB3b]
          Length = 514

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 144/274 (52%), Gaps = 13/274 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V +   +++  K    +V  SV   Q V+  V++++ + L   ++P
Sbjct: 33  EVRRALLEADVALDVVRSFTDKVQQKAVGANVVKSVSPGQMVVKIVNDVMVETLGSTAQP 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIW 161
            + D +  P  I++VG+ G GKTT   K++K++ +  G +V++A+ D  R AA +QL I 
Sbjct: 93  IDLD-APAPVPIMLVGLQGAGKTTTTAKIAKRLKERHGKRVLMASLDVKRPAAQEQLAIL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +   D +    G D   +   A + A+ +  DVL++DTAGR H +  LM  + ++  V
Sbjct: 152 GRQVEVDTLPIVQGQDPVKITKRAEETARREGYDVLLLDTAGRTHIDEPLMEEMAQIKAV 211

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            K      PH +L V+DA TGQ+A+   + F    G TG+++T++DG  RGG  + +   
Sbjct: 212 SK------PHEILLVVDALTGQDAVNLAKNFDDRVGLTGIVLTRVDGDGRGGAALSMRAV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+  +  GE ++ L+ F     +  I G  D
Sbjct: 266 TGKPIKLIATGEKMDALDEFSPSRIANRILGMGD 299


>gi|145503400|ref|XP_001437676.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404829|emb|CAK70279.1| unnamed protein product [Paramecium tetraurelia]
          Length = 507

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 127/275 (46%), Gaps = 20/275 (7%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-------------KMLMPLS 100
           I  +I +A+ +  V     K+  +DV ++  L +   + H             +ML    
Sbjct: 31  ILGEIAMALLKADVNAKFIKKLREDVKMEFKLCEEENINHQKLIQKAVVDGLTRMLESDR 90

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           KPF      + +VI+ VG+ G GKTT   K +      G KV L   DTFR+ A DQLK 
Sbjct: 91  KPFQPK-KGKQNVIMFVGLQGSGKTTTCTKYAYYYQKKGWKVALVCADTFRAGAFDQLKQ 149

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A +    F  S   +D   +A E     + +  +++I+DT+GR    + L   + ++  
Sbjct: 150 NATKVRVPFYGSYTEADPVQIAQEGVNVFKKEAFEIIIVDTSGRHKQENDLFEEMKQVEA 209

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
            +K      P  ++ V+D++ GQ    Q   F        +I+TK+DG A+GGG +  V 
Sbjct: 210 AVK------PDDIVFVMDSSIGQACFDQALAFKKAVNVGSVIITKLDGHAKGGGALSAVA 263

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + P+ F+G GE  +DLE F A  F   + G  D
Sbjct: 264 ATESPIVFIGEGEHFDDLESFEASSFVRRLLGLGD 298


>gi|71906282|ref|YP_283869.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Dechloromonas aromatica RCB]
 gi|71845903|gb|AAZ45399.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Dechloromonas aromatica RCB]
          Length = 455

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 153/289 (52%), Gaps = 20/289 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           ++   + D +RE +   L+ +D+ + V +  +  +  K   ++V       Q ++  V  
Sbjct: 22  LTETNIGDALRE-VRMALLEADVALPVVKDFIAAVKEKAVGEEVIGSLSPGQALIGVVHA 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT 149
            + K++    +  N++ +  P ++L+ G+ G GKTT +GKL+K + +    KV++ + D 
Sbjct: 81  ELTKIMGDAHEGINFN-TQPPAIVLMAGLQGAGKTTTVGKLAKFLKENHKKKVLVVSCDV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A +   DF  S +G    A+A +A   A+    DVL++DTAGRL  + 
Sbjct: 140 YRPAAIEQLKSVAGQAGVDFFPSAVGEKPEAIAADAIDWAKRHYHDVLLVDTAGRLAIDE 199

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +MA I       KRL  HA   P   L V+DA  GQ+A+   + F+     TG+++TK+
Sbjct: 200 EMMAEI-------KRL--HAAIDPIETLFVVDAMLGQDAVNTAKAFNEALPLTGVVLTKL 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG ARGG  + +      P+ F GVGE ++ LE F  +  ++ I G  D
Sbjct: 251 DGDARGGAALSVRHITGKPIKFAGVGEKLSGLEAFHPERMASRILGMGD 299


>gi|325290414|ref|YP_004266595.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965815|gb|ADY56594.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 461

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 7/208 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V+++VG+ G GKTT   KL+  +   G   +L A D +R AAI QL++  ++   
Sbjct: 99  SKPPTVVMLVGLQGAGKTTHGAKLANMLKKQGKHPLLVACDIYRPAAIKQLQVLGEQIKV 158

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V S    +   +A E+   A     D +IIDTAGRLH N  LM  +  +  V++    
Sbjct: 159 P-VFSLGQENPVKIAGESLDYAGKNGHDTVIIDTAGRLHINEELMGELEDIKAVVQ---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             PH +L V+DA TGQ+A+   E F++    +G+I++K+DG  RGG  I +      P+ 
Sbjct: 214 --PHEILLVVDAMTGQDAVNVAETFNSKLALSGVILSKLDGDTRGGAAISVRSVTGCPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + GVGE ++ LE F      + I G  D
Sbjct: 272 YAGVGEKMDALEVFYPDRMVSRILGMGD 299


>gi|195014137|ref|XP_001983965.1| GH16182 [Drosophila grimshawi]
 gi|193897447|gb|EDV96313.1| GH16182 [Drosophila grimshawi]
          Length = 508

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 8/226 (3%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           ELI K++ P  KP+      + +VI+ VG+ G GKTT   KL+        K  L   DT
Sbjct: 82  ELI-KLVDPGVKPYQ-PIKGKANVIMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ+K  A +    F  S    D   +A E     + +  +++I+DT+GR     
Sbjct: 140 FRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L         +L   +  +P +++ V+DAT GQ    Q + F        +I+TK+DG 
Sbjct: 200 SLFE------EMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKEKVDIGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299


>gi|190571419|ref|YP_001975777.1| signal recognition particle protein [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213018818|ref|ZP_03334626.1| signal recognition particle protein [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357691|emb|CAQ55140.1| signal recognition particle protein [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995769|gb|EEB56409.1| signal recognition particle protein [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 447

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 158/296 (53%), Gaps = 19/296 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+   S   KL+     IIS    +  +RE +   LI +D+ + VA+K + ++  
Sbjct: 1   MFKSLTESLNSVFSKLRG--KSIISEDDFNLAMRE-IRIALIEADVSLEVAKKFINDIKD 57

Query: 73  K----RYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPH-VILVVGVNGVGKT 125
           K    +  K VS  +++    +++   L+ +  S+  + + + +P  VI++VG+ G GKT
Sbjct: 58  KVIGEKVIKSVSPSQMII---KIVQDNLVAVLGSEKSDLNLAAKPPAVIMMVGLQGAGKT 114

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T  GKL+ K+     KVMLA+ D +R AA  QL++   +     +   I      +   A
Sbjct: 115 TTSGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDVQTLPVVIDEKPVTITKRA 174

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+ +  DVLI+DTAGRLH ++ +M      ++ +K +   +P  V+ V DA  GQ++
Sbjct: 175 LAAAKNENYDVLILDTAGRLHIDNNMM----NELKAVKEI--ASPAEVILVADAMIGQDS 228

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +   + F+ + G TG+I+T++DG ARGG  + + +    P+ F+  GE ++DL+ F
Sbjct: 229 VNIAKSFNEIIGVTGIILTRVDGDARGGAALSMKMITDCPIKFIACGEKLSDLDDF 284


>gi|160915188|ref|ZP_02077401.1| hypothetical protein EUBDOL_01196 [Eubacterium dolichum DSM 3991]
 gi|158432987|gb|EDP11276.1| hypothetical protein EUBDOL_01196 [Eubacterium dolichum DSM 3991]
          Length = 470

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 155/316 (49%), Gaps = 22/316 (6%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A ESLS   +LTK F + + K K      ++ + ++D +RE +   L+ +D+   V + 
Sbjct: 1   MAFESLS--DRLTKAFKNITGKGK------LTEKNMNDMLRE-VRMSLLEADVNYGVVKD 51

Query: 66  IVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +  +  K   ++V       Q V+  V + I  +L     P N+  ++    I++VG+ 
Sbjct: 52  FIARIKEKALGEEVLGSLNPGQMVVKIVHDEIVDLLGSEDAPINYK-ANGITTIMMVGLQ 110

Query: 121 GVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT   K++  M      K +L A D  R AAI+QLK        +     I + A 
Sbjct: 111 GTGKTTASAKIANVMQKKQARKPLLVACDVVRPAAIEQLKTLGKSIGVEVFSLGIETKAL 170

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
             A  A + A+    D +++DTAGRLH +  LM  +  +   ++      P  +L  +DA
Sbjct: 171 DTAKAAMEYAREHGYDTVLLDTAGRLHIDDALMQELADIKSFVQ------PDDILLTVDA 224

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ+ +     FH     +GL++TK+DG +RGGG++ +     +PV F+G+GE I DL+
Sbjct: 225 MTGQDIVNVASSFHEQLQVSGLVVTKLDGDSRGGGVLSVRSITGVPVKFVGLGEKIEDLD 284

Query: 300 PFVAKDFSAVITGCLD 315
            F     +  I G  D
Sbjct: 285 VFHPSRMADRILGMGD 300


>gi|306833449|ref|ZP_07466576.1| signal recognition particle protein [Streptococcus bovis ATCC
           700338]
 gi|304424219|gb|EFM27358.1| signal recognition particle protein [Streptococcus bovis ATCC
           700338]
          Length = 521

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q+++  V+E + ++L   S+    + S + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQIVKIVNEELTEILG--SETAELEKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187
           L+ K+  D   + ++ A D +R AAIDQLK     +  +    ++G+D +A  +      
Sbjct: 121 LANKLIKDENARPLMIAADIYRPAAIDQLKTLG--SQINVPVFDMGTDHSAVEIVTNGLA 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+    D +IIDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QAKENHNDYVIIDTAGRLQIDEKLM----EELRDVKAL--ANPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S
Sbjct: 233 VADEFNKQLDITGVVLTKIDGDTRGGAALSIREITSKPIKFTGTGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|242780873|ref|XP_002479687.1| signal sequence receptor alpha subunit, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218719834|gb|EED19253.1| signal sequence receptor alpha subunit, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 644

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 136/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +ED L++ ++    A ++ E    EL+ K+ A   SV   L    E  + K+L P S   
Sbjct: 355 MEDHLMKKNVAREAALRLCEGVKQELVGKKTANFQSVDAALRSAMEASLRKILTPTSSLD 414

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P   + + RP+VI +VGVNGVGK+T + K+   +     +V++AA DTFR
Sbjct: 415 LLHEIQAVTAPTAKEQAPRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLVAACDTFR 474

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++   R   +    E            G DAA +A +A     A K DV++ID
Sbjct: 475 SGAVEQLRVHV-RNLTELSARENIGEVELYEKGYGKDAANVAKDAVAYGAANKFDVVLID 533

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +         P  +  V +A  G +++ Q   F+   G   
Sbjct: 534 TAGRRHNDQRLMSSLEKFAKFAN------PDKIFMVGEALVGTDSVMQARNFNQAFGPGR 587

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 588 NLDGFIISKCDTVGDMVGTLVSMVHATSIPIVFLGVGQHYGDL 630


>gi|149184776|ref|ZP_01863094.1| signal recognition particle GTPase [Erythrobacter sp. SD-21]
 gi|148832096|gb|EDL50529.1| signal recognition particle GTPase [Erythrobacter sp. SD-21]
          Length = 499

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 150/284 (52%), Gaps = 19/284 (6%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKML 96
           VRE + ++   L+ +D+ + V ++ ++ +  K    +V  SV   Q+V+  V++ + +ML
Sbjct: 27  VREAMREVRIALLEADVALPVVRRFIDAVTEKAIGSEVLKSVTPGQQVVKIVNDELVEML 86

Query: 97  M---PLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFR 151
                 ++P + + + +P V I++VG+ G GKTT   KL K + +  G K M+A+ D  R
Sbjct: 87  GGDGEDAEPRDLNLNAKPPVVIMMVGLQGSGKTTTTAKLGKLLREKHGKKSMMASLDVNR 146

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            AA +QLKI  ++     +    G     +A  A + A+    DVL++DTAGRLH +  L
Sbjct: 147 PAAQEQLKILGEQVDVATLPIMPGQQPVDIARRAMEAAKLAAADVLLLDTAGRLHVDEAL 206

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           MA +  +  V       AP  VL V+D+ TGQ+A+   + F      TG+++T+MDG AR
Sbjct: 207 MAEMKAISNV------SAPTEVLLVVDSLTGQDAVNVAQSFTGEVPLTGVVLTRMDGDAR 260

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG  + +      PV F G GE ++ +E F     +  I G  D
Sbjct: 261 GGAALSMRYVTGKPVKFAGTGEKLDAIEAFDPSRVAGRILGMGD 304


>gi|32266439|ref|NP_860471.1| signal recognition particle protein [Helicobacter hepaticus ATCC
           51449]
 gi|32262490|gb|AAP77537.1| signal recognition particle protein [Helicobacter hepaticus ATCC
           51449]
          Length = 447

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 135/260 (51%), Gaps = 11/260 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +EL+  L+++D+     ++I++E+  +     +  Q  +  + + + K+L   SK +   
Sbjct: 30  DELKKTLLKNDVYHKAVKQIIQEVQQRTKEAGIGKQNFINALQDALSKILQS-SKSYGIS 88

Query: 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           FS  P  VI+++G+ G GKTT   KL+      G KV+L A D  R AAI+QL   A   
Sbjct: 89  FSPTPPSVIIMMGLQGSGKTTSSAKLALYFKQKGKKVLLVACDLHRLAAIEQLTQLAQSI 148

Query: 166 SADFVC---SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
             D      S   ++A  +A EA ++A     D++IID+AGRL  + +LM+ + ++ R +
Sbjct: 149 EVDIFTPSHSSQPNNAVYVAKEAKQKAIEAHYDIVIIDSAGRLAIDEVLMSELEEIKRAV 208

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                 +    L V D+ +GQ+ +R  + F    G  G+I++K D   +GG  + I    
Sbjct: 209 ------SASECLYVADSLSGQDGIRSAQHFDDKIGIDGVILSKFDSDTKGGIALSIAYQI 262

Query: 283 KIPVYFLGVGEGINDLEPFV 302
            IP+ F+G GE I D + F+
Sbjct: 263 GIPLKFIGSGEKIADFDIFI 282


>gi|171779410|ref|ZP_02920374.1| hypothetical protein STRINF_01255 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282027|gb|EDT47458.1| hypothetical protein STRINF_01255 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 519

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q+++  V+E + ++L   S+    + S + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQIVKIVNEELTEILG--SETAELEKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187
           L+ K+  +   + M+ A D +R AAIDQLK     +  +    ++G+D +A  +      
Sbjct: 121 LANKLIKEENARPMMIAADIYRPAAIDQLKTLG--SQINVPVFDMGTDHSAVEIVTNGLA 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+    D +IIDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QAKENHNDYVIIDTAGRLQIDEALM----QELRDVKAL--AKPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S
Sbjct: 233 VADEFNKQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|70607071|ref|YP_255941.1| signal recognition 54 kDa protein [Sulfolobus acidocaldarius DSM
           639]
 gi|73920792|sp|O07853|SRP54_SULAC RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|68567719|gb|AAY80648.1| signal recognition 54 kDa protein [Sulfolobus acidocaldarius DSM
           639]
          Length = 444

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 147/304 (48%), Gaps = 29/304 (9%)

Query: 28  LKEGITDIISSRRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
           L++ +   + S   +  V E   EL+ +LI++D+ V + +      LT R  K ++ ++ 
Sbjct: 5   LRDAVRKFLGSSDYEKAVNEFIKELQIILIKADVNVRLVKD-----LTDRIKKRITEEKP 59

Query: 85  LYDVSE---LIHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKM 135
              + +    I  +   LS+ F  D          P++I++VGV G GKTT  GKL+   
Sbjct: 60  PSAIEKREWFISIVYDELSRLFGGDKEPEVMPKKLPYIIMLVGVQGSGKTTTSGKLALFY 119

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV L A D +R AA +QL     + +          +   +A    ++   +K++
Sbjct: 120 KKKGYKVGLVAADIYRPAAYEQLIQIGQQINIPVYGEPGNKNPIEIATNGLEKFLKEKMN 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRL----DPHAPHSVLQVLDATTGQNALRQVEM 251
           ++IIDTAGR         G G+   +L+ +    D   P  V+ V+DA+ GQ A      
Sbjct: 180 IVIIDTAGR--------HGYGEEASLLEEMKSMYDKIHPDEVILVIDASIGQKAYDLASR 231

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH  +    LI++KMDGTA+GGG +  V+     + F+G GE +++LE F  + F + + 
Sbjct: 232 FHQASPIGSLIVSKMDGTAKGGGALSAVIATGAQIKFIGTGEKLDELEVFNPRRFVSRLL 291

Query: 312 GCLD 315
           G  D
Sbjct: 292 GLGD 295


>gi|228476757|ref|ZP_04061423.1| signal recognition particle protein [Streptococcus salivarius
           SK126]
 gi|228251628|gb|EEK10729.1| signal recognition particle protein [Streptococcus salivarius
           SK126]
          Length = 520

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 106/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + M+ A D +R AAIDQLK    + +   
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEQEARPMMIAADIYRPAAIDQLKTLGQQINVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 + A  +     +QA+A K D ++IDTAGRL  +  LM  +  +       D   
Sbjct: 161 FDMGTETPAVEIVKNGLEQARANKNDYVLIDTAGRLQIDETLMQELHDI------KDFAH 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ +L V+D+  GQ A    + F+     TG+++TK+DG  RGG  + I      P+ F 
Sbjct: 215 PNEILLVVDSMIGQEAANVAKEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I D+E F     S+ I G  D
Sbjct: 275 GTGEKITDIETFHPDRMSSRILGMGD 300


>gi|91201020|emb|CAJ74078.1| strongly similar to signal recognition particle protein [Candidatus
           Kuenenia stuttgartiensis]
          Length = 450

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 137/271 (50%), Gaps = 19/271 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIHKMLMPL------SKPFN 104
           L+ +D+   V +  ++++ T+R   +  ++ V     V +++H  L+ L      S PF 
Sbjct: 38  LLEADVNYKVVKNFIKQV-TERSVGEEVIKSVAPGQQVVKIVHDELIKLMGESDTSIPFK 96

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
                   V+++VG+ G GKTT  GKL++ M   G K +LAA D  R AA++QLK    +
Sbjct: 97  EGGQT---VVMLVGLQGSGKTTTAGKLARLMLSKGKKPLLAAADIQRPAAVEQLKTLGRQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                V  E       +  EA K A+    DV+I+DTAGRLH ++ LM      +R +K 
Sbjct: 154 LDIQ-VYFEKDLPPIKICSEAIKYAKENGHDVVILDTAGRLHIDNELML----ELREIK- 207

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            D   P  +  V DA TGQ+A+     F    G  G+I++K+DG  RGG  + I      
Sbjct: 208 -DTLTPDQIYFVCDAMTGQDAVNSAREFDEQLGFDGVILSKLDGDTRGGAALSIRAVTGK 266

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G+GE ++ LE F     ++ I G  D
Sbjct: 267 PIKFVGIGEKLDRLEEFHPDRMASRILGMGD 297


>gi|153008411|ref|YP_001369626.1| signal recognition particle protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151560299|gb|ABS13797.1| signal recognition particle protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 523

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GK++K++++   K V++A+ DT R AA +QL+    +TS D 
Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKKVLMASLDTRRPAAQEQLRQLGIQTSVDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM  +  + +         
Sbjct: 160 LPIIAGQSPVEIAKRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+     F    G TG+++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
             GE ++ LE F  K  +  I G  D
Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299


>gi|1850607|gb|AAB48050.1|AAB48050 Ffh [Streptococcus mutans]
          Length = 516

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L+    ++   R+L +     V +E+   L+ +D+ + V ++ ++ +  +   
Sbjct: 3   FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+++  V+E +  +L   +       S  P +I++VG+ G GKTT  GKL
Sbjct: 63  HEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIMMVGLQGAGKTTFAGKL 121

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + K+  +   + ++ A D +R AAIDQLKI   + +           A  +  +   QA+
Sbjct: 122 ANKLVKEENARPLMIAADIYRPAAIDQLKILGQQINVPVFDMGTEHSAVEIVSQGLAQAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             + D ++IDTAGRL  +  LM      +R +K L    P+ +L V+D+  GQ A     
Sbjct: 182 ENRNDYVLIDTAGRLQIDEKLMT----ELRDIKAL--ANPNEILLVVDSMIGQEAANVAR 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ I
Sbjct: 236 EFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|124268404|ref|YP_001022408.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methylibium
           petroleiphilum PM1]
 gi|124261179|gb|ABM96173.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methylibium
           petroleiphilum PM1]
          Length = 457

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 6/208 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +  P VIL+ G+ G GKTT   KL++ +     KV+  +GD +R AAI+QLK    +  A
Sbjct: 98  TQPPAVILMAGLQGAGKTTTTAKLARHLIGRKKKVLTVSGDVYRPAAIEQLKTVTQQAGA 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           ++  S+       +A  A   A+    DVL++DTAGRL  +  +MA I  +   L     
Sbjct: 158 EWFPSQASDQPVDIALAAVDYAKKHYFDVLLVDTAGRLAIDEAMMAEIRALHAALN---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+ 
Sbjct: 214 --PIETLFVVDAMQGQDAINVAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F GV E I+ LE F A+  +  + G  D
Sbjct: 272 FAGVSEKIDGLELFDAERHAGRVLGMGD 299


>gi|168701266|ref|ZP_02733543.1| signal recognition particle protein [Gemmata obscuriglobus UQM
           2246]
          Length = 481

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 19/284 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI--- 92
           +++  + DG+RE +    + +D+   VA   +  +  K   +DV + RV  D SE I   
Sbjct: 22  LTAENVKDGLRE-VRRAFLEADVNFTVATDFIARVEAKSLGQDV-LARV--DPSEQIVKN 77

Query: 93  -HKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            ++ L+ L  P +     R   P V+++ G+ G GKTT   KL+  +     K MLAA D
Sbjct: 78  VYEELVALMGPVDHKIPQRADRPVVLMLCGLQGAGKTTTAAKLALTLKGQNRKPMLAAAD 137

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             R  A++QL+   ++     V SE  ++   +   A  QA+    D +I+DTAGRL  +
Sbjct: 138 LQRPGAVEQLRTLGEQIGVP-VYSE-ATNPVDVCRNAVAQAKKTLCDCVILDTAGRLQID 195

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  + ++ +++K      P     V+DA  GQ A    + F+        I+TK+DG
Sbjct: 196 DALMDELKRIDKLVK------PDECYLVVDAMIGQEAANVAKTFNDALELNACILTKLDG 249

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            ARGG  + I     +P+ F+G+GE ++ LE FV +  +  I G
Sbjct: 250 DARGGAALSIKGVTGVPIKFVGMGEKVDKLEDFVPERMAGRILG 293


>gi|160933328|ref|ZP_02080716.1| hypothetical protein CLOLEP_02173 [Clostridium leptum DSM 753]
 gi|156867205|gb|EDO60577.1| hypothetical protein CLOLEP_02173 [Clostridium leptum DSM 753]
          Length = 456

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 155/306 (50%), Gaps = 19/306 (6%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
            F   S KL      + S  +L +  V+E + ++   L+ +D+   VA+   +++  +  
Sbjct: 2   AFDGLSEKLSAAFKRLRSKGKLSESDVKEAMREVRLALLEADVNYKVAKDFTQKVTERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q V+  V+E + +++   +   N+  S  P V+++ G+ G GKTT   K
Sbjct: 62  GSEVMESLTPAQMVIKIVNEELTELMGGTNARLNFP-SKPPLVLMMCGLQGSGKTTHSAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQA 189
           L + +   G + +L A D +R AAI QL++  ++  A     ++G++    +A  A   A
Sbjct: 121 LGRLLKSQGHRPLLVACDIYRPAAIQQLEVVGNK--AGVPVFQMGTENPVKIAQAAVAHA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DV+I+DTAGRLH +  LM  +  +   ++      P  +L V+DA TGQ+A+   
Sbjct: 179 KDHGNDVVILDTAGRLHIDEDLMTELKNIKNKVE------PQEILLVVDAMTGQDAVNVA 232

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+ +   +G+I+TK+DG  RGG  + +      P+ F G+GE + DLE F     ++ 
Sbjct: 233 KSFNDLLEISGVILTKLDGDTRGGAALSVRAVTGKPIKFSGIGEKLEDLEAFHPDRMASR 292

Query: 310 ITGCLD 315
           I G  D
Sbjct: 293 ILGMGD 298


>gi|2231060|emb|CAA73234.1| fifty-four homologue of SRP54 [Sulfolobus acidocaldarius]
          Length = 446

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 147/304 (48%), Gaps = 29/304 (9%)

Query: 28  LKEGITDIISSRRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
           L++ +   + S   +  V E   EL+ +LI++D+ V + +      LT R  K ++ ++ 
Sbjct: 7   LRDAVRKFLGSSDYEKAVNEFIKELQIILIKADVNVRLVKD-----LTDRIKKRITEEKP 61

Query: 85  LYDVSE---LIHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKM 135
              + +    I  +   LS+ F  D          P++I++VGV G GKTT  GKL+   
Sbjct: 62  PSAIEKREWFISIVYDELSRLFGGDKEPEVMPKKLPYIIMLVGVQGSGKTTTSGKLALFY 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV L A D +R AA +QL     + +          +   +A    ++   +K++
Sbjct: 122 KKKGYKVGLVAADIYRPAAYEQLIQIGQQINIPVYGEPGNKNPIEIATNGLEKFLKEKMN 181

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRL----DPHAPHSVLQVLDATTGQNALRQVEM 251
           ++IIDTAGR         G G+   +L+ +    D   P  V+ V+DA+ GQ A      
Sbjct: 182 IVIIDTAGR--------HGYGEEASLLEEMKSMYDKIHPDEVILVIDASIGQKAYDLASR 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH  +    LI++KMDGTA+GGG +  V+     + F+G GE +++LE F  + F + + 
Sbjct: 234 FHQASPIGSLIVSKMDGTAKGGGALSAVIATGAQIKFIGTGEKLDELEVFNPRRFVSRLL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GLGD 297


>gi|15675165|ref|NP_269339.1| putative signal recognition particle [Streptococcus pyogenes M1
           GAS]
 gi|13622328|gb|AAK34060.1| putative signal recognition particle [Streptococcus pyogenes M1
           GAS]
          Length = 519

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187
           L+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  +  +
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+    D ++IDTAGRL  +  LM  +    R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QARENHNDYVLIDTAGRLQIDEKLMGEL----RDVKAL--AQPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     S
Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|169342711|ref|ZP_02863752.1| signal recognition particle protein [Clostridium perfringens C str.
           JGS1495]
 gi|169299217|gb|EDS81287.1| signal recognition particle protein [Clostridium perfringens C str.
           JGS1495]
          Length = 452

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 137/270 (50%), Gaps = 16/270 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +K +  +  K   ++V       Q+V+  V++ +  ++        +  
Sbjct: 39  LLEADVNFKVVKKFISNVKDKCVGEEVLNSLTPGQQVIKIVNDELTTLMGETESKLKYS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            + P V ++VG+ G GKTT+ GKL+  +     K +L A D +R AAI QL++   +   
Sbjct: 98  DNGPTVFMLVGLQGAGKTTMAGKLALHLRKKNKKPLLVACDIYRPAAIKQLQVVGKQI-- 155

Query: 168 DFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           D     +G    A  +A  A + A+    +V+IIDTAGRLH +  LM  +  +  V    
Sbjct: 156 DIPVFSMGDKVKAVDIAKAAIEHAKDNGNNVVIIDTAGRLHIDEDLMQELKDVKEV---- 211

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  +L V+DA TGQ+A+   E F+     +G+I+TK+DG  RGG  + I      P
Sbjct: 212 --SNPSEILLVVDAMTGQDAVNVAETFNNSLDLSGIILTKLDGDTRGGAALSIRDITGKP 269

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+GVGE ++D+E F     ++ I G  D
Sbjct: 270 IKFVGVGEKMSDIEVFHPDRMASRILGMGD 299


>gi|126465672|ref|YP_001040781.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Staphylothermus marinus F1]
 gi|171769996|sp|A3DML3|SRP54_STAMF RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|126014495|gb|ABN69873.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Staphylothermus marinus F1]
          Length = 441

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 6/203 (2%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V+L+VG+ G GKTT   KL+      G +V L A DT+R AA DQLK   ++        
Sbjct: 99  VMLLVGLQGSGKTTTAAKLAYYYKLEGYRVGLVAADTYRPAAYDQLKQLGEQIGVPVYGE 158

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               DA  +A    +   ++  D++I+DTAGR H    L+  + ++   +K      P  
Sbjct: 159 PDNKDAVEIARRGVEYFVSRGFDIVIVDTAGRHHREEDLLREMREIAENIK------PDE 212

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V+ V+DA  GQ A    + FH       +I+TK+DGTA+GGG +  V      + F+G G
Sbjct: 213 VVLVIDAAIGQQAHDLAKKFHEATPIGSIIVTKLDGTAKGGGALSAVAVTGATIKFIGTG 272

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E I++LE F    F A I G  D
Sbjct: 273 EKIDELEVFRPPRFVARILGIGD 295


>gi|313218053|emb|CBY41387.1| unnamed protein product [Oikopleura dioica]
          Length = 502

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 138/291 (47%), Gaps = 29/291 (9%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L K        L E   +I   ++L DGV++++ DL    +IG           L KR  
Sbjct: 28  LKKCLKDVQSALLEADVNIKLVKQLTDGVKKQI-DL---DNIGTG---------LNKRRV 74

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKM 135
              +V + L  + +       P  KP  W  +  R  VI+ VG+ G GKTT   KL+   
Sbjct: 75  IQTAVYKELCRICD-------PGVKP--WKPTKGRSSVIMFVGLQGSGKTTSCIKLAYHY 125

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G K  +   DTFR+ A DQ+K    +    F  S    D A +AY+  +  + +K D
Sbjct: 126 QKKGWKCAVVCADTFRAGAYDQVKQNCTKARIPFYGSLTEPDPAVIAYDGVETFKKEKFD 185

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++I+DT+GR      L     +M++V   ++   P +++ V+DA+ GQ    Q + F   
Sbjct: 186 IIIVDTSGRHKQEDSLFE---EMLQVNNAVE---PDNIIFVMDASIGQACESQAKAFKDQ 239

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                +I+TK+D  A+GGG +  +   + P+ F+G GE I++LEPF    F
Sbjct: 240 VDVGSVIITKLDSHAKGGGALSAIAATQSPIVFIGTGEHIDELEPFETTKF 290


>gi|310791224|gb|EFQ26753.1| SRP54-type protein [Glomerella graminicola M1.001]
          Length = 663

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 143/282 (50%), Gaps = 33/282 (11%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLM 97
           RL +GV +EL  L +++    ++  KI       + A + S+ ++L   S  +L+ ++  
Sbjct: 388 RLCEGVEKEL--LGVKTGSFESINAKI-------QAAMEASLTKMLTPTSSLDLLREIDA 438

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             + P       RP+VI +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++Q
Sbjct: 439 ITAPPATSLRRARPYVISIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQ 498

Query: 158 LKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           L +   R   +    E           G DAA +A +A   A  +  DV++IDTAGR HN
Sbjct: 499 LAVHV-RNLKELTVREGGHVELYQKGYGKDAATVARDAVSHAAQEGFDVVLIDTAGRRHN 557

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT----GLIM 263
           +  LM+ + K  +  +      P  +L V +A  G +++ Q   F+A  G      G I+
Sbjct: 558 DQRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGAVRTLDGFII 611

Query: 264 TKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           +K D      G L+ +V    +PV F+GVG+  +DL  F  K
Sbjct: 612 SKCDTVGNMVGTLVSLVHATNVPVLFVGVGQHYSDLRNFSVK 653


>gi|293363907|ref|ZP_06610643.1| signal recognition particle protein [Mycoplasma alligatoris A21JP2]
 gi|292552397|gb|EFF41171.1| signal recognition particle protein [Mycoplasma alligatoris A21JP2]
          Length = 448

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 10/230 (4%)

Query: 90  ELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLA 145
           +++H+ L+ +  +K        +P+VI+++G+ G GKTT   KLS   +   A  K ++ 
Sbjct: 76  KIVHEELIRVLGNKVVELKIEKKPYVIMMIGLQGSGKTTATTKLSYYFRKKHAIEKPLVV 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A D +R AA+DQL   A     D+    + + A  +     K+A   K D++IIDTAGRL
Sbjct: 136 AADIYRPAAVDQLVTLAKSIQVDYYEEGVKNSAENIVTNGLKKAHENKNDLVIIDTAGRL 195

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             +  L+  +  + ++ K      P  +L V DA +GQ+ +   + FH     TG I+TK
Sbjct: 196 AIDENLVVELENIKKIAK------PDEILFVADALSGQDIINVAQTFHDRLKLTGSIITK 249

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +D  ARGG  + I     +P+ F+G GE +++L+ F     +  I G  D
Sbjct: 250 LDSDARGGAALSIRQVLNLPIRFIGTGEKVSNLDLFYPDRMADRILGMGD 299


>gi|289550983|ref|YP_003471887.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658478|ref|ZP_07911350.1| signal recognition particle protein [Staphylococcus lugdunensis
           M23590]
 gi|289180515|gb|ADC87760.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496807|gb|EFU85130.1| signal recognition particle protein [Staphylococcus lugdunensis
           M23590]
          Length = 455

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  M      K ML AGD +R AAIDQL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQLDVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K      
Sbjct: 161 YSEGDQVKPQQIVENALKHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKAISK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  V+ V+DA TGQ+A+   + F      TG+ +TK+DG  RGG  + I    + P+ F+
Sbjct: 215 PDEVMLVVDAMTGQDAVNVAQSFDEQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+ E ++ LE F  +  ++ I G  D
Sbjct: 275 GMSEKMDGLELFHPERMASRILGMGD 300


>gi|195441672|ref|XP_002068627.1| GK20323 [Drosophila willistoni]
 gi|194164712|gb|EDW79613.1| GK20323 [Drosophila willistoni]
          Length = 508

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 8/226 (3%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           ELI K++ P  KP+      + +VI+ VG+ G GKTT   KL+        K  L   DT
Sbjct: 82  ELI-KLVDPGVKPYQ-PVKGKANVIMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ+K  A +    F  S    D   +A E     + +  +++I+DT+GR     
Sbjct: 140 FRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L         +L   +  +P +++ V+DAT GQ    Q + F        +I+TK+DG 
Sbjct: 200 SLFE------EMLAVANAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299


>gi|85057345|ref|YP_456261.1| signal recognition particle, subunit FFH/SRP54 [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|84789450|gb|ABC65182.1| signal recognition particle, subunit FFH/SRP54 [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 456

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 137/264 (51%), Gaps = 31/264 (11%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPLSKPFNWD 106
           L+ SD+ + V  K   E++ K+  K    Q VL  ++      ++++K L+ +      D
Sbjct: 37  LVESDVHLQVIDKF-NEIIEKKTLK----QEVLKGLNNKEHIIKIVNKTLIQILGSTRVD 91

Query: 107 FSHRPHV----ILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAIDQL 158
            + +P+     ++++G+ G GKTT  GKL+    KK S    KV+L A D +R  AI+QL
Sbjct: 92  LTFKPNCNLNTLMLIGLQGSGKTTTAGKLALWLRKKNSK---KVLLVACDIYRPGAIEQL 148

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K+   + + D V S++ +D   +     K A  +  D +IIDTAGRL  +  +M      
Sbjct: 149 KVIGKQINID-VFSKLDADVLDIVDAGLKHASQEGYDAVIIDTAGRLDTDETMM------ 201

Query: 219 IRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            + L+++   A P  +L V+D  +GQ +    + FH   G TG+I+TKMD   +GG  + 
Sbjct: 202 -QELQQIKAKADPSEILLVVDCLSGQQSANTAQSFHNQLGATGVILTKMDADTKGGAALS 260

Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301
           +     +P+ F+   E I+ LEPF
Sbjct: 261 VRAMTDLPLKFVSSSEKIDSLEPF 284


>gi|322391775|ref|ZP_08065240.1| signal recognition particle protein [Streptococcus peroris ATCC
           700780]
 gi|321145255|gb|EFX40651.1| signal recognition particle protein [Streptococcus peroris ATCC
           700780]
          Length = 521

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEEDARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVIDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     ++ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMASRILGMGD 300


>gi|152965364|ref|YP_001361148.1| signal recognition particle protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359881|gb|ABS02884.1| signal recognition particle protein [Kineococcus radiotolerans
           SRS30216]
          Length = 521

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 150/313 (47%), Gaps = 28/313 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L      +    RL     D    E+   L+ +D+ + V ++    +  +   
Sbjct: 2   FATLSDRLTATFKSLRGKGRLTEADVDATVREIRRALLDADVALPVVREFTSRIRERATG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVQQNLNPAQQVVKIVNEELVAILGGETRRLRFS-KNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G + +L A D  R  A++QL+I  +R   D    E G+   D  ++A +  + 
Sbjct: 121 GRHLKQNGNRPLLVACDLQRPNAVNQLQITGERAGVDVFAPEPGNGVGDPVSVARQGLEH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNA 245
           A+    DV+++DTAGR   ++ +M          + +D  A   P  VL VLDA  GQ+A
Sbjct: 181 ARHHHYDVVVVDTAGRTGVDAEMMQ---------QAIDIRAAVTPDEVLFVLDAMVGQDA 231

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +   E F    G  G+++TK+DG ARGG  + +      PV F   GE ++D E F    
Sbjct: 232 VATAEAFRDGVGFDGVVLTKLDGDARGGAALSVRQVTGQPVMFASTGEKLDDFELFHPDR 291

Query: 306 FSAVITGCLDYGE 318
            ++ I   LD G+
Sbjct: 292 MASRI---LDMGD 301


>gi|198432537|ref|XP_002131641.1| PREDICTED: similar to signal recognition particle 54 [Ciona
           intestinalis]
          Length = 497

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 6/197 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+VI+ VG+ G GKTT   KL+        K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KPNVIMFVGLQGSGKTTTCTKLAYYYQRKNWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S   +D   +A E  +  + +  +++I+DT+GR      L     +M++V   +   A
Sbjct: 160 YGSYTEADPVVIASEGVETFKEENFEIIIVDTSGRHKQEDSLFE---EMLQVYNAV---A 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P +V+ V+DA+ GQ    Q   F        +I+TK+DG A+GGG +  V   + P+ F+
Sbjct: 214 PDNVIFVMDASIGQACEGQARAFKEKVDVASVIVTKLDGHAKGGGALSAVAATQSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDF 306
           G GE I+D E F  + F
Sbjct: 274 GTGEHIDDFEMFKTQPF 290


>gi|125980516|ref|XP_001354282.1| GA18336 [Drosophila pseudoobscura pseudoobscura]
 gi|195167799|ref|XP_002024720.1| GL22620 [Drosophila persimilis]
 gi|54642588|gb|EAL31335.1| GA18336 [Drosophila pseudoobscura pseudoobscura]
 gi|194108125|gb|EDW30168.1| GL22620 [Drosophila persimilis]
          Length = 508

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 8/226 (3%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           ELI K++ P  KP+      + ++I+ VG+ G GKTT   KL+        K  L   DT
Sbjct: 82  ELI-KLVDPGVKPYQ-PIKGKANIIMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ+K  A +    F  S    D   +A E     + +  +++I+DT+GR     
Sbjct: 140 FRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L     +M+ V   ++P    +++ V+DAT GQ    Q + F        +I+TK+DG 
Sbjct: 200 SLFE---EMLAVANAVNPD---NIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299


>gi|320546729|ref|ZP_08041040.1| signal recognition particle protein [Streptococcus equinus ATCC
           9812]
 gi|320448608|gb|EFW89340.1| signal recognition particle protein [Streptococcus equinus ATCC
           9812]
          Length = 521

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 159/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q+++  V+E + ++L   S+    + S + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQIVKIVNEELTEILG--SETAELEKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + M+ A D +R AAIDQLK     +  +    ++G+D +A+       A
Sbjct: 121 LANKLIKEEKARPMMIAADIYRPAAIDQLKTLG--SQINVPVFDMGTDHSAVEIVTHGLA 178

Query: 190 QAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QAK+   D +IIDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QAKENHNDYVIIDTAGRLQIDEALM----QELRDVKAL--AKPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S
Sbjct: 233 VADEFNKQLDITGIVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|294787392|ref|ZP_06752645.1| signal recognition particle protein [Parascardovia denticolens
           F0305]
 gi|315227040|ref|ZP_07868827.1| signal recognition particle protein [Parascardovia denticolens DSM
           10105]
 gi|294484748|gb|EFG32383.1| signal recognition particle protein [Parascardovia denticolens
           F0305]
 gi|315119490|gb|EFT82623.1| signal recognition particle protein [Parascardovia denticolens DSM
           10105]
          Length = 544

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 156/328 (47%), Gaps = 38/328 (11%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S   +LT  F +   K K   +DI       DG   E+   L+ +D+ + V +     + 
Sbjct: 6   SLTDRLTGAFKNLRSKGKLTESDI-------DGTIREIRRALLDADVSLDVVKSFTARVR 58

Query: 72  TKRYAKDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            +   ++V+      Q+V+  V++ + ++L   + +P N+   + P +I++ G+ G GKT
Sbjct: 59  ERALGEEVNKALNPAQQVVSIVNDELTQILGAGVDRPLNF-AKNPPTIIMLAGLQGAGKT 117

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------- 175
           T+ GKL   + D G   +L A D  R  A+ QL++  +R        E+G          
Sbjct: 118 TLAGKLGYWLKDLGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPELGVQSSSSDVVS 177

Query: 176 -----SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 D   +A  + + A+ K  D +IIDTAGRL  +  LM    K  R ++  D   P
Sbjct: 178 PGQATGDPVKVARGSIEVAKQKLYDAVIIDTAGRLGVDEELM----KQARDIR--DAVHP 231

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           + +L V+DA  GQ+A+R  + F      TG++++K+DG ARGG  + +      P+ F  
Sbjct: 232 NEILFVIDAMIGQDAVRTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFSS 291

Query: 291 VGEGINDLEPFVAKDFSAVITGCLDYGE 318
            GEG+ D E F     ++ I   LD G+
Sbjct: 292 TGEGLKDFEVFHPDRMASRI---LDMGD 316


>gi|329891279|ref|ZP_08269622.1| signal recognition particle protein [Brevundimonas diminuta ATCC
           11568]
 gi|328846580|gb|EGF96144.1| signal recognition particle protein [Brevundimonas diminuta ATCC
           11568]
          Length = 507

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 19/289 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYD 87
           +S + +++ +RE +   L+ +D+ + V +  +    T    ++V         V +++YD
Sbjct: 22  LSEKDVEEALRE-VRVALLEADVALPVVKDFIARAKTAATGEEVIRAVKPADQVVKIVYD 80

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAA 146
              L+  +      P N + +  P V+L+ G+ G GKTT   KL+ ++S     KVM+A+
Sbjct: 81  --GLVEMLGGEEPVPLNTNATP-PAVVLMAGLQGSGKTTTSAKLALRLSKFDKKKVMMAS 137

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DT R AA++QL     +     +    G  A  +   A + A+ +  DVLI+DTAGR+ 
Sbjct: 138 LDTRRPAAMEQLATLGQQIEVATLPIVAGESAVQITRRALQSAKLQGFDVLILDTAGRIT 197

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  LM  + ++  + K      P   L V D+ TGQ+A+R    FH     TGL++T+ 
Sbjct: 198 LDEGLMNEVAEVAEIAK------PVETLLVADSLTGQDAVRTAAAFHERLPLTGLVLTRA 251

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG ++ +     +P+ +LG GE ++ L+ F A+  +  I G  D
Sbjct: 252 DGDGRGGAMLSMRAVTGLPIKYLGAGEKVDALDVFDARRVAGRILGQGD 300


>gi|187736626|ref|YP_001878738.1| signal recognition particle protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426678|gb|ACD05957.1| signal recognition particle protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 479

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P  I+VVG+NG GKTT   KL+ ++ + G + +L A D  R AA+DQL   A++      
Sbjct: 98  PARIMVVGLNGAGKTTTSAKLALRLKNEGRRPLLVACDLVRPAAVDQLATLAEQIGVPVY 157

Query: 171 CSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
               GS D  A+A EA + A+ +   V+I DTAGR   +  L+  + ++   L      +
Sbjct: 158 KPAPGSRDVVAVAREALEWARTQNGTVMIFDTAGRQEVDEALIDELRQLHAFL------S 211

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V DA TGQ A+   + F      TG+++TK+DG ARGG  + +      P+ F 
Sbjct: 212 PRETLLVADAATGQQAVNVAQTFDRAVNVTGIVLTKLDGDARGGAALSMRSVTGKPIKFS 271

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE ++   PFV    +  I G  D
Sbjct: 272 GEGEKLDQFGPFVPGRMADRILGMGD 297


>gi|18310695|ref|NP_562629.1| signal recognition particle protein [Clostridium perfringens str.
           13]
 gi|110800465|ref|YP_696400.1| signal recognition particle protein [Clostridium perfringens ATCC
           13124]
 gi|110802935|ref|YP_699000.1| signal recognition particle protein [Clostridium perfringens SM101]
 gi|168207936|ref|ZP_02633941.1| signal recognition particle protein [Clostridium perfringens E str.
           JGS1987]
 gi|168210654|ref|ZP_02636279.1| signal recognition particle protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214190|ref|ZP_02639815.1| signal recognition particle protein [Clostridium perfringens CPE
           str. F4969]
 gi|182625861|ref|ZP_02953627.1| signal recognition particle protein [Clostridium perfringens D str.
           JGS1721]
 gi|18145376|dbj|BAB81419.1| signal recognition particle protein [Clostridium perfringens str.
           13]
 gi|110675112|gb|ABG84099.1| signal recognition particle protein [Clostridium perfringens ATCC
           13124]
 gi|110683436|gb|ABG86806.1| signal recognition particle protein [Clostridium perfringens SM101]
 gi|170660749|gb|EDT13432.1| signal recognition particle protein [Clostridium perfringens E str.
           JGS1987]
 gi|170711297|gb|EDT23479.1| signal recognition particle protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714291|gb|EDT26473.1| signal recognition particle protein [Clostridium perfringens CPE
           str. F4969]
 gi|177908895|gb|EDT71387.1| signal recognition particle protein [Clostridium perfringens D str.
           JGS1721]
          Length = 452

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 137/270 (50%), Gaps = 16/270 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +K +  +  K   ++V       Q+V+  V++ +  ++        +  
Sbjct: 39  LLEADVNFKVVKKFISNVKDKCVGEEVLNSLTPGQQVIKIVNDELTTLMGETESKLKYS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            + P V ++VG+ G GKTT+ GKL+  +     K +L A D +R AAI QL++   +   
Sbjct: 98  DNGPTVFMLVGLQGAGKTTMAGKLALHLRKKNKKPLLVACDIYRPAAIKQLQVVGKQI-- 155

Query: 168 DFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           D     +G    A  +A  A + A+    +V+IIDTAGRLH +  LM  +  +  V    
Sbjct: 156 DIPVFSMGDKVKAVDIAKAAIEHAKDNGNNVVIIDTAGRLHIDEDLMQELKDVKEV---- 211

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  +L V+DA TGQ+A+   E F+     +G+I+TK+DG  RGG  + I      P
Sbjct: 212 --SNPSEILLVVDAMTGQDAVNVAETFNNSLDLSGIILTKLDGDTRGGAALSIRDITGKP 269

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+GVGE ++D+E F     ++ I G  D
Sbjct: 270 IKFVGVGEKMSDIEVFHPDRMASRILGMGD 299


>gi|71910728|ref|YP_282278.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS5005]
 gi|71853510|gb|AAZ51533.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS5005]
          Length = 520

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187
           L+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  +  +
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+    D ++IDTAGRL  +  LM  +    R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QARENHNDYVLIDTAGRLQIDEKLMGEL----RDVKAL--AQPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     S
Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|308234553|ref|ZP_07665290.1| signal recognition particle protein [Atopobium vaginae DSM 15829]
 gi|328944151|ref|ZP_08241616.1| signal recognition particle protein [Atopobium vaginae DSM 15829]
 gi|327492120|gb|EGF23894.1| signal recognition particle protein [Atopobium vaginae DSM 15829]
          Length = 493

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 148/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELL 71
           F++ S +L+E    +     +S R ++D +RE +   L+ +D+   V +  V    E+ L
Sbjct: 2   FSNLSDRLQETFAHLRGKGKLSERDINDAMRE-IRMALLEADVNYRVVKDFVATCKEKCL 60

Query: 72  TKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           T    + +S  Q V+  V E +  +L        +     PH+I++ G+ G GKTT   K
Sbjct: 61  TADILQSLSAAQNVVAVVLEELTALLGTTESKLTFSPHRTPHIIMLCGLQGSGKTTAAAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G   +LAA DT R AA DQL+   +         + G++A  +A EA + A 
Sbjct: 121 LAYLLKSQGHAPLLAACDTHRPAAADQLQTLGEEIGVRVYRGD-GANAIRVAQEAVQDAI 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRL  +  +M     +   +K      P  +L V+DA  GQ+ +  V+
Sbjct: 180 DNLKDVVIVDTAGRLQIDEEMMQEAIDIKHAVK------PEQILMVVDAMAGQDIVNVVQ 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F       G+IM+K+DG ARGGG + +      P+ F+ +GE  + LE F     +  I
Sbjct: 234 EFSKRLDFDGVIMSKLDGDARGGGALSVREVTGKPIKFVSMGEKPSSLEVFHPDRMAKRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|315427553|dbj|BAJ49153.1| signal recognition particle subunit SRP54 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 466

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 146/308 (47%), Gaps = 24/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S    LKE     ++S   D    EEL    +  L+ +D+ V + QKI E +  + + 
Sbjct: 27  FSSMGRSLKEVFRKFLASPSADKSSVEELVRGIQRSLLMADVRVELVQKISERIRARAFE 86

Query: 77  KDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTV 127
           + +        SV +++Y+  ELI+ +     KP  +     +P+V++++G+ G GKTT 
Sbjct: 87  EKLPPGVSRKDSVAKIVYE--ELINLLG---GKPAQFSTGGKKPYVVMLLGIQGTGKTTT 141

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+  +   G KV +   DT+R AA  QLK   +            ++   +A +  +
Sbjct: 142 AAKLANYLKVGGYKVGVVCADTYRPAAYQQLKHLLEPRQIPVYGEPENNNPVEIARKGLE 201

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +   VDV+IIDTAGR      LM  +  + + LK      P   + V+D T GQ A  
Sbjct: 202 HFKQMGVDVVIIDTAGRHRQQESLMDEMKMLEKELK------PDENILVIDGTIGQQAGA 255

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               FH       +I+TK+D + RGGG +  V     P+ F+GVGE + D +PF    + 
Sbjct: 256 HAAAFHKATPVGSIIITKLDTSGRGGGALAAVAETGAPIKFVGVGESVEDFQPFNPSSYI 315

Query: 308 AVITGCLD 315
           A + G  D
Sbjct: 316 ASLLGMPD 323


>gi|315425555|dbj|BAJ47216.1| signal recognition particle subunit SRP54 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 466

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 146/308 (47%), Gaps = 24/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S    LKE     ++S   D    EEL    +  L+ +D+ V + QKI E +  + + 
Sbjct: 27  FSSMGRSLKEVFRKFLASPSADKSSVEELVRGIQRSLLMADVKVELVQKISERIRARAFE 86

Query: 77  KDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTV 127
           + +        SV +++Y+  ELI+ +     KP  +     +P+V++++G+ G GKTT 
Sbjct: 87  EKLPPGVSRKDSVAKIVYE--ELINLLG---GKPAQFSTGGKKPYVVMLLGIQGTGKTTT 141

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+  +   G KV +   DT+R AA  QLK   +            ++   +A +  +
Sbjct: 142 AAKLANYLKVGGYKVGVVCADTYRPAAYQQLKHLLEPRQIPVYGEPENNNPVEIARKGLE 201

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +   VDV+IIDTAGR      LM  +  + + LK      P   + V+D T GQ A  
Sbjct: 202 HFKQMGVDVVIIDTAGRHRQQESLMDEMKMLEKELK------PDENILVIDGTIGQQAGA 255

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               FH       +I+TK+D + RGGG +  V     P+ F+GVGE + D +PF    + 
Sbjct: 256 HAAAFHKATPVGSIIITKLDTSGRGGGALAAVAETGAPIKFVGVGESVEDFQPFNPSSYI 315

Query: 308 AVITGCLD 315
           A + G  D
Sbjct: 316 ASLLGMPD 323


>gi|150016059|ref|YP_001308313.1| signal recognition particle protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149902524|gb|ABR33357.1| signal recognition particle protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 450

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 132/268 (49%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V ++ +  + +K    +V       Q V+  V+E +  ++       N+  
Sbjct: 39  LLEADVNYKVVKQFISSVSSKCVGSEVLESLTPGQHVIKIVNEELTNLMGGTESKLNYSS 98

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S    VI++VG+ G GKTT+ GKL+  +     K +L A D +R AAI QL++   +   
Sbjct: 99  SGLT-VIMLVGLQGAGKTTMCGKLALNLRKNNKKPLLVACDIYRPAAIKQLEVVGKQIEI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                        +A  A   A+    +V+IIDTAGRLH +  LM  + K I+     D 
Sbjct: 158 PVFSMGDKVSPVEIAKNAITHAKDNGNNVVIIDTAGRLHIDEELMQEL-KNIK-----DN 211

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+DA TGQ+A+   E F+     +G+I+TK+DG  RGG  + I      P+ 
Sbjct: 212 VNPSEILLVVDAMTGQDAVNVAENFNNDLDLSGVILTKLDGDTRGGAALSIKTIIDKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + GVGE +ND E F     ++ I G  D
Sbjct: 272 YAGVGEKMNDFEVFHPDRMASRILGMGD 299


>gi|307731042|ref|YP_003908266.1| signal recognition particle protein [Burkholderia sp. CCGE1003]
 gi|307585577|gb|ADN58975.1| signal recognition particle protein [Burkholderia sp. CCGE1003]
          Length = 455

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK   ++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             SE       +A  A   A+    DVL++DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSEPDQKPVDIARAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHSTLK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFYPDRMANRILGMGD 303


>gi|326933220|ref|XP_003212705.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           [Meleagris gallopavo]
          Length = 661

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 148/302 (49%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           +R+  D V E+++D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 357 TRQDMDPVLEKMKDHLIAKNVAAEIAVQLCESVAKKLEGKVMGTFTTVTSTVKQALQEAL 416

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 417 VQILQPQRRVDVLRDVMDAQRHRRPYVVTFCGVNGVGKSTNLAKISFWLIENGFSVLIAA 476

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R +A                    G DAA +A EA   A+ + 
Sbjct: 477 CDTFRAGAVEQLRTHTRRLNALHPPESHGGRSMVQLYEKGYGKDAAGIAMEAISYARNQG 536

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      +AP  VL V +A  G  A+ Q+  F 
Sbjct: 537 FDVVLVDTAGRMQDNAPLMTALAKLIAV------NAPDLVLFVGEALVGNEAVDQLVKFN 590

Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 591 KALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 650

Query: 303 AK 304
           AK
Sbjct: 651 AK 652


>gi|323527400|ref|YP_004229553.1| signal recognition particle protein [Burkholderia sp. CCGE1001]
 gi|323384402|gb|ADX56493.1| signal recognition particle protein [Burkholderia sp. CCGE1001]
          Length = 455

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK   ++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             SE       +A  A   A+    DVL++DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSEPDQKPVDIARAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHSTLK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFYPDRMANRILGMGD 303


>gi|224282424|ref|ZP_03645746.1| signal recognition particle protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 542

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 144/298 (48%), Gaps = 32/298 (10%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKML- 96
           DG   E+   L+ +D+ + V +     +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 24  DGTIREIRRALLDADVALDVVRSFTARIRERALGTEVSEALNPAQQVVKIVNEELTDVLG 83

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             + +P N+   + P +I++ G+ G GKTT+ GKL   + D+G   +L A D  R  A+ 
Sbjct: 84  QGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVT 142

Query: 157 QLKIWADRTSADFVCSEIG----------------SDAAALAYEAFKQAQAKKVDVLIID 200
           QL++  +R        E G                 D   +A ++   A+ K  D +IID
Sbjct: 143 QLQVVGERAGVPVYAPEKGVQSDGGDSVSAPGETSGDPVKVARDSIALAKQKLYDTVIID 202

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  + +LM    +  R ++  D   P+ +L V+DA  GQ+A++  + F      TG
Sbjct: 203 TAGRLGVDEVLM----QQARDIR--DAVNPNEILFVIDAMIGQDAVQTAKAFDEGVDFTG 256

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           ++++K+DG ARGG  + +      P+ F   GEG+ D E F     ++ I   LD G+
Sbjct: 257 VVLSKLDGDARGGAALSVASVTGKPILFASTGEGLKDFEVFHPDRMASRI---LDMGD 311


>gi|86359537|ref|YP_471429.1| signal recognition particle GTP-binding protein [Rhizobium etli CFN
           42]
 gi|86283639|gb|ABC92702.1| signal recognition particle GTP-binding protein [Rhizobium etli CFN
           42]
          Length = 525

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT   K++ ++S     KV++A+ DT R AA +QL+    + S D 
Sbjct: 100 PVVVMMVGLQGSGKTTTTAKIAHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQASIDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM    +M  + KR +PH 
Sbjct: 160 LPVITGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMV---EMADIKKRSNPH- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              +L V D+ TGQ+A+     F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 216 --EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE +++LE F  +  +  I G  D
Sbjct: 274 GVGEKMSELEEFHPRRIADRILGMGD 299


>gi|212716744|ref|ZP_03324872.1| hypothetical protein BIFCAT_01681 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660448|gb|EEB21023.1| hypothetical protein BIFCAT_01681 [Bifidobacterium catenulatum DSM
           16992]
          Length = 548

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 153/324 (47%), Gaps = 36/324 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 64  TEVSQALNPAQQVVKIVNEELTAVLGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D+G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVASPGLT 182

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A +A   A+ K  D +IIDTAGRL  +  LM    K  R ++  D   P+ +L
Sbjct: 183 TGDPVKVARDAVALAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DAVQPNEIL 236

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG
Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           + D E F     ++ I   LD G+
Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317


>gi|284925965|gb|ADC28317.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 445

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 141/271 (52%), Gaps = 15/271 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLT--KRYAKD--VSVQRVLYDVSELIHKMLMPLSKP 102
           E L+  L+++D    V  K+ +ELLT  +  AK   +  ++ L  +   +  +L    K 
Sbjct: 30  ETLKKALLKAD----VHHKVTKELLTLIEEDAKQNGIGQKQFLNAIKINLENILSVNGKN 85

Query: 103 FNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
             + F+ +P  V+L+ G+ G GKTT   KL+  +     KV++AA D  R AA++QL   
Sbjct: 86  QGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLIQL 145

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            +    +    E   D   +A EA K+A++  VDVL++DTAGRL  +  LM      +R 
Sbjct: 146 CEANEIELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALM----DELRA 201

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +K  D   P  +  V DA +GQ+ ++    F+ V G +G+I++K D   +GG  + I   
Sbjct: 202 VK--DVLNPDEIFYVADAMSGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQ 259

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             IP+ F+GVGE + DLE F+     + I G
Sbjct: 260 IGIPLRFIGVGEKVADLEVFIPDRIVSRIMG 290


>gi|62185241|ref|YP_220026.1| signal recognition particle protein [Chlamydophila abortus S26/3]
 gi|62148308|emb|CAH64075.1| signal recognition particle protein [Chlamydophila abortus S26/3]
          Length = 447

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 23/306 (7%)

Query: 22  ASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLTK 73
           +S S KL    + +++SRR+ ++ + E + ++   L+ +D+   V +    K+ E++L +
Sbjct: 3   SSLSQKLSSIFSSLVASRRITEENISEAIREVRLALLDADVNYHVVKSFIAKVKEKVLGE 62

Query: 74  RYAKDVS--VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              K VS   Q + Y   EL       L    + + S  P VIL+ G+ G GKTT   KL
Sbjct: 63  EVWKHVSPGQQFIRYLHEELTE----LLGDKTDLNTSGNPGVILLCGLQGTGKTTTCAKL 118

Query: 132 SKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +  + +     KV++   D  R AA++QL+    +T A+   SE G D   +  +A   A
Sbjct: 119 AAYVLEERKAKKVLVVPCDLKRFAAVEQLRNLISKTKAELYNSE-GQDPVKVVSQALDYA 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + ++ D+++IDTAGRLH + +LM  +  + +V      HA   +  V++   GQ+A+   
Sbjct: 178 KQERHDLVLIDTAGRLHVDEVLMEELASIQKV-----SHASERLF-VMNLAMGQDAVSTA 231

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I++  DG AR G ++ +      P+ F G GE I DL PF A+  +  
Sbjct: 232 KAFDNYLDLTGVIISMTDGDARAGAVLSMKSLLGKPIKFEGCGEKIQDLRPFNAESMADR 291

Query: 310 ITGCLD 315
           I G  D
Sbjct: 292 ILGMGD 297


>gi|255326590|ref|ZP_05367667.1| signal recognition particle protein [Rothia mucilaginosa ATCC
           25296]
 gi|283457889|ref|YP_003362490.1| signal recognition particle GTPase [Rothia mucilaginosa DY-18]
 gi|255296330|gb|EET75670.1| signal recognition particle protein [Rothia mucilaginosa ATCC
           25296]
 gi|283133905|dbj|BAI64670.1| signal recognition particle GTPase [Rothia mucilaginosa DY-18]
          Length = 525

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 148/316 (46%), Gaps = 28/316 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLSEADIDATVREIRRALLDADVAVPVVREFTAHVKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++  N   S  P +I++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPSQQIVKIVNEELVSILGGSTRRINMAKSG-PTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------SDAAALA 182
           +  +   G   ML A D  R  A+ QLK+  +R          G          D   +A
Sbjct: 121 AHWLKGQGHTPMLIASDLQRPNAVTQLKVVGERAGVPVYAPHPGVTSEFDVPTGDPVQVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +   +A+AK  DV+I+DTAGRL  ++ LM    + IR     D   PH VL V+DA  G
Sbjct: 181 RDGVAEARAKLHDVVIVDTAGRLGVDAELMQQ-ARNIR-----DAIEPHEVLFVIDAMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+     F+     TG++++K+DG ARGG  + +      P+ F   GE + D E F 
Sbjct: 235 QDAVNTANAFNEGVDFTGVVLSKLDGDARGGAALSVASVTGKPIMFASTGENVTDFEQFH 294

Query: 303 AKDFSAVITGCLDYGE 318
               ++ I   LD G+
Sbjct: 295 PDRMASRI---LDMGD 307


>gi|224438372|ref|ZP_03659299.1| signal recognition particle protein [Helicobacter cinaedi CCUG
           18818]
 gi|313144814|ref|ZP_07807007.1| signal recognition particle protein [Helicobacter cinaedi CCUG
           18818]
 gi|313129845|gb|EFR47462.1| signal recognition particle protein [Helicobacter cinaedi CCUG
           18818]
          Length = 447

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 139/273 (50%), Gaps = 11/273 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           ++L+  L+++D+     ++I++E+  +  +  +  Q  +  + E ++++L    K +   
Sbjct: 30  DDLKKTLLKNDVYHKATKQIIQEVSQRTKSNGIGKQSFMNALQESLNEILKS-KKSYGIS 88

Query: 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           FS  P  VIL++G+ G GKTT   KL+  +   G KV+L A D  R AAI+QL   A   
Sbjct: 89  FSPTPPSVILMMGLQGSGKTTSSAKLALYLKQKGKKVLLVACDLHRLAAIEQLSQLAASI 148

Query: 166 SADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
             D       S   +A  +A EA ++A     DV+IID+AGRL  +  LM        +L
Sbjct: 149 EVDIFTPNQSSKPENAVQVAKEAKQKATNTHYDVVIIDSAGRLSIDEALMQ------ELL 202

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           +  D       L V D+ +GQ+ +R  + F+   G  G+I++K D  ++GG  + I    
Sbjct: 203 EIKDSINATECLYVADSLSGQDGIRSAQNFNEKIGIDGVILSKFDSDSKGGIALSIAYQI 262

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +P+ F+G GE + D + FV +   + + G  D
Sbjct: 263 GVPLKFIGSGEKVADFDVFVPERIISRLMGAGD 295


>gi|259503527|ref|ZP_05746429.1| signal recognition particle protein [Lactobacillus antri DSM 16041]
 gi|259168605|gb|EEW53100.1| signal recognition particle protein [Lactobacillus antri DSM 16041]
          Length = 480

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 143/282 (50%), Gaps = 20/282 (7%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96
           +RE + ++   L+ +D+   V +  V+ +  K    +V       Q+++  V++ + K++
Sbjct: 28  LRETMREIRLALLEADVNFTVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVNDELTKLM 87

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAI 155
              + P N   +H P VI++VG+ G GKTT  GKL+ ++ +    + M  A D +R AAI
Sbjct: 88  GEEAVPLNK-AAHIPTVIMMVGLQGAGKTTTAGKLALRLKNEDHARPMFIAADVYRPAAI 146

Query: 156 DQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
            QL+  A     D    E G+D     +  E  + A+    D +IIDTAGRL  +  LM 
Sbjct: 147 TQLQQVA--AQIDVPVFEKGTDVDPVEIVREGMEVAKQNHNDYVIIDTAGRLQIDEQLMD 204

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            +  +  ++       P  +L V+D+ TGQNA+   + F      TG+++TK+DG  RGG
Sbjct: 205 ELANIKELVH------PDEILLVIDSMTGQNAVNTAQGFDDKLDITGVVLTKLDGDTRGG 258

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F+G GE ++DL+ F     ++ I G  D
Sbjct: 259 AAMSIRAVTGKPIKFVGEGEKMSDLDVFHPDRMASRILGMGD 300


>gi|50955120|ref|YP_062408.1| signal recognition particle, subunit SRP54 [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951602|gb|AAT89303.1| signal recognition particle, subunit SRP54 [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 523

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 148/294 (50%), Gaps = 21/294 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +   ++ +  +L     DG   E+   L+ +D+ + V ++    +  +   
Sbjct: 4   FGTLSDRLADTFKNLRTKGKLSPSDVDGTVREIRRALLDADVALDVVKEFTGRVRERALN 63

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130
            DV+      Q+V+  V+E +  +L    +     F+ +P  VI++ G+ G GKTT+ GK
Sbjct: 64  DDVNKALNPAQQVVQIVNEELIGILGGEQR--RLQFAKKPPTVIMLAGLQGAGKTTLAGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L K +   G   +L A D  R  A++QL+I  ++        E G+   +   +A +A  
Sbjct: 122 LGKWLVKDGHTPILVAADLQRPNAVNQLQIVGEQAGVPVYAPEPGNGVGNPVKVAKDALT 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K+ D ++IDTAGRL  ++ LM    +   + K  DP     VL V+DA  GQ+A+ 
Sbjct: 182 FAETKQYDTVVIDTAGRLGVDAELMK---QAADIRKATDPD---EVLFVIDAMIGQDAVA 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             + F      TG++++K+DG ARGG  + +      P+ F   GEG++D EPF
Sbjct: 236 TAKAFQDGVDFTGVVLSKLDGDARGGAALSVASITGRPIIFASTGEGLDDFEPF 289


>gi|291456068|ref|ZP_06595458.1| signal recognition particle protein [Bifidobacterium breve DSM
           20213]
 gi|291382477|gb|EFE89995.1| signal recognition particle protein [Bifidobacterium breve DSM
           20213]
          Length = 551

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 148/307 (48%), Gaps = 33/307 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +    ++  +   
Sbjct: 4   FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 64  TEVSEALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D+G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQT 182

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A ++ + A+ K  D +IIDTAGRL  +  LM    K  R ++  D   P+ +L
Sbjct: 183 SGDPVKVARDSIELAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DVVQPNEIL 236

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG
Sbjct: 237 FVIDAMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296

Query: 295 INDLEPF 301
           + D E F
Sbjct: 297 LKDFEVF 303


>gi|67473872|ref|XP_652685.1| Signal recognition particle receptor alpha subunit [Entamoeba
           histolytica HM-1:IMSS]
 gi|56469558|gb|EAL47298.1| Signal recognition particle receptor alpha subunit, putative
           [Entamoeba histolytica HM-1:IMSS]
          Length = 488

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 140/277 (50%), Gaps = 33/277 (11%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV----QRVLYDVSELIHKMLMPLSKP 102
           E++E +LI  ++   +A +I   + T    K V        V+  V+E++ +++ P S P
Sbjct: 208 EKIEKMLIEKNVNSEIAAQIKNNIQTLLNGKKVDTFTLSGTVIQGVTEVLTRIMTPTS-P 266

Query: 103 FN--WDFSHRP-----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
            +   + S +      + ++ +GVNGVGK+T + K++  ++    KVM+AA DTFR+ A+
Sbjct: 267 IDVAKEISEKKANGEVYTMVFLGVNGVGKSTSLSKMACWLTSLNYKVMIAACDTFRAGAV 326

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           DQL + A +           +D +A+A  A K+A+    DVL++DTAGR+  N  LM  I
Sbjct: 327 DQLAVHAQKLGITLYEKGYDTDPSAIARNALKRAKEDGYDVLLVDTAGRMQGNDALMKAI 386

Query: 216 GKMIRVLKRLDPHAPHS--VLQVLDATTGQNALRQVEMFHAV----------AGTTGLIM 263
            K++        H+  +  VL V +A  G +A+ Q+  F+             G  G+I+
Sbjct: 387 AKLV--------HSAQTDLVLFVAEALVGNDAVNQLTTFNRYIIDYAPNKQSKGVNGIIL 438

Query: 264 TKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TK D    + G  I +     IP+ F+G G+   DL+
Sbjct: 439 TKFDTIDDKVGAAISLTYCTGIPILFVGSGQHYTDLK 475


>gi|295666231|ref|XP_002793666.1| signal sequence receptor alpha subunit [Paracoccidioides
           brasiliensis Pb01]
 gi|226277960|gb|EEH33526.1| signal sequence receptor alpha subunit [Paracoccidioides
           brasiliensis Pb01]
          Length = 651

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 137/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +E+ L++ ++    A ++ E    EL+ K+ A   S+   L    E  + K+L P S   
Sbjct: 362 MEEHLLKKNVAREAAVRLCEGVEHELVGKKTASFQSIDSALRSAMESSLRKILTPTSSLD 421

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P +     RP+VI +VGVNGVGK+T + K+   +     +V++ A DTFR
Sbjct: 422 LLREIEAVTSPSSSQRQRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLITACDTFR 481

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A   A A   DV++ID
Sbjct: 482 SGAVEQLRVHA-RNLQELSSRENVGHVGLYEKGYGKDAANVAKDAVAYATANNFDVVLID 540

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +  +      P  +  V +A  G +++ Q   F+   GT  
Sbjct: 541 TAGRRHNDQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGTGR 594

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLG+G+   DL
Sbjct: 595 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGIGQHYGDL 637


>gi|212526426|ref|XP_002143370.1| signal sequence receptor alpha subunit, putative [Penicillium
           marneffei ATCC 18224]
 gi|210072768|gb|EEA26855.1| signal sequence receptor alpha subunit, putative [Penicillium
           marneffei ATCC 18224]
          Length = 645

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 136/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +ED L++ ++    A ++ E    EL+ K+ A   SV   L    E  + K+L P S   
Sbjct: 356 MEDHLMKKNVAREAALRLCEGVKQELVGKKTANFQSVDAALRTAMEASLRKILTPTSSLD 415

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P     + RP+VI +VGVNGVGK+T + K+   +     +V++AA DTFR
Sbjct: 416 LLHEIQAVTAPIAKGQAPRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLVAACDTFR 475

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++   R   +    E            G DAA +A +A     A K DV++ID
Sbjct: 476 SGAVEQLRVHV-RNLTELSARENIGEVELYEKGYGKDAANVAKDAVAYGAANKFDVVLID 534

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +         P  +  V +A  G +++ Q   F+   G+  
Sbjct: 535 TAGRRHNDQRLMSSLEKFAKFAN------PDKIFMVGEALVGTDSVMQARNFNQAFGSGR 588

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 589 NLDGFIISKCDTVGDMVGTLVSMVHATSIPIVFLGVGQHYGDL 631


>gi|330717910|ref|ZP_08312510.1| signal recognition particle protein [Leuconostoc fallax KCTC 3537]
          Length = 492

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+     ++ V  +  K    D+     + Q+V+  V+E + KM+   + P N   
Sbjct: 39  LLEADVNYGTVKRFVANVRGKASGADILEGLDAPQQVVKIVNEELTKMMGDEAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P +I++ G+ G GKTT + KL+ K+  +   + +L A D +R AAIDQL+I      
Sbjct: 98  PQIPTIIMMAGLQGAGKTTTVAKLAYKLKQENKARPLLIAADIYRPAAIDQLEILGKDLD 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                    +D   +     ++A+  + D + IDTAGRL  + +LM  +  +  +     
Sbjct: 158 IPVFSLGTDTDPRDIVRAGLEEAKQHRNDYVFIDTAGRLQIDEVLMQELKDIAEIAH--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  +L  +DA TGQNA    + F      TG+++TK+DG  RGG  + I      P+
Sbjct: 215 ---PDEILLTVDAMTGQNATETAKGFSESLDLTGVVLTKLDGDTRGGAALSIRDVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G GE   DL+ F     ++ I G  D
Sbjct: 272 KFVGQGEKPTDLDVFYPDRMASRILGMGD 300


>gi|322376834|ref|ZP_08051327.1| signal recognition particle protein [Streptococcus sp. M334]
 gi|321282641|gb|EFX59648.1| signal recognition particle protein [Streptococcus sp. M334]
          Length = 523

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  + +LM      +R +K L  
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDELLM----NELRDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F+     TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDAMIGQEAANVAREFNTQLEVTGVILTKIDGDTRGGAALSVRHITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|319764321|ref|YP_004128258.1| signal recognition particle protein [Alicycliphilus denitrificans
           BC]
 gi|317118882|gb|ADV01371.1| signal recognition particle protein [Alicycliphilus denitrificans
           BC]
          Length = 459

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QLK    +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S        +A  A   A+    DVL++DTAGRL  + +LM  I  +  VL    
Sbjct: 157 AEWFPSSPDQKPRDIALAALDYARKHYFDVLLVDTAGRLAIDELLMQEIKDLHAVLN--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+
Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRAITGAPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GV E I+ LE F A+  +  + G  D
Sbjct: 271 KFAGVSEKIDGLEVFDAQRHAGRVLGMGD 299


>gi|323127254|gb|ADX24551.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 520

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFK 187
           L+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D  A  +  +  +
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHLAVDIVRKGLE 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+  + D ++IDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F     S
Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|148380407|ref|YP_001254948.1| signal recognition particle protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933476|ref|YP_001384624.1| signal recognition particle protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935337|ref|YP_001388141.1| signal recognition particle protein [Clostridium botulinum A str.
           Hall]
 gi|168180670|ref|ZP_02615334.1| signal recognition particle protein [Clostridium botulinum NCTC
           2916]
 gi|168184655|ref|ZP_02619319.1| signal recognition particle protein [Clostridium botulinum Bf]
 gi|226949802|ref|YP_002804893.1| signal recognition particle protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|237795885|ref|YP_002863437.1| signal recognition particle protein [Clostridium botulinum Ba4 str.
           657]
 gi|148289891|emb|CAL83999.1| signal recognition particle protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929520|gb|ABS35020.1| signal recognition particle protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931251|gb|ABS36750.1| signal recognition particle protein [Clostridium botulinum A str.
           Hall]
 gi|182668381|gb|EDT80360.1| signal recognition particle protein [Clostridium botulinum NCTC
           2916]
 gi|182672287|gb|EDT84248.1| signal recognition particle protein [Clostridium botulinum Bf]
 gi|226841461|gb|ACO84127.1| signal recognition particle protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|229263878|gb|ACQ54911.1| signal recognition particle protein [Clostridium botulinum Ba4 str.
           657]
          Length = 449

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 144/285 (50%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           +S + + + +RE ++  L+ +D+   V +  ++ +  K    +V       Q+V+  V+E
Sbjct: 23  LSEKDIKEAMRE-VKLALLEADVNYKVVKNFIKSVTEKCMGNEVLESLTPGQQVIKIVNE 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + +++       N   S    VI++VG+ G GKTT+ GKL+  +     + +L A D +
Sbjct: 82  ELTELMGSTESTLNSSTSGLT-VIMLVGLQGAGKTTMAGKLALHLRKRNKRPLLVACDVY 140

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI QL++   +            +   ++  A + A+  K +V+IIDTAGRLH +  
Sbjct: 141 RPAAIKQLQVVGKQIDIPVFTMGDKLNPVDISKAAIEHAKNNKNNVVIIDTAGRLHIDEE 200

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +  +   +       P  +L V+DA TGQ+A+     F+     +G+I+TK+DG  
Sbjct: 201 LMDELHNIKEEVN------PSEILLVVDAMTGQDAVNVANNFNDKLDISGVILTKLDGDT 254

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+G+GE +NDLE F     ++ I G  D
Sbjct: 255 RGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRILGMGD 299


>gi|23098986|ref|NP_692452.1| signal recognition particle [Oceanobacillus iheyensis HTE831]
 gi|22777214|dbj|BAC13487.1| signal recognition particle [Oceanobacillus iheyensis HTE831]
          Length = 448

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +        +L A D +R AAI QL+     T  D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANHLRKKHNRNPLLVACDVYRPAAIKQLETLG--TQLDM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++A    +A++A + A+ +  D +IIDTAGRLH +  LM  +  +   +K    
Sbjct: 159 PVFSMGTEANPVDIAHQAIEHAKEEHRDYVIIDTAGRLHVDENLMDELQSIKNDVK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+D+ TGQ+A+   E F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PDEIFLVVDSMTGQDAVNVAESFNEQLDITGVVLTKLDGDTRGGAALSIKSVTDKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LE F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDQLEAFHPERMASRILGMGD 300


>gi|156088505|ref|XP_001611659.1| SRP54-type protein, GTPase domain containing protein [Babesia
           bovis]
 gi|154798913|gb|EDO08091.1| SRP54-type protein, GTPase domain containing protein [Babesia
           bovis]
          Length = 566

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 135/280 (48%), Gaps = 29/280 (10%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNW-----DF 107
           + +DI   +   I   L+ K+ A   SV   + + + + + ++L P  +P N      + 
Sbjct: 293 VANDISTMICDSISAGLVGKKTASLKSVSATVREALEDAVRRILTP-KEPINLLRNVSEA 351

Query: 108 SHRPHV--ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             R  V  +L +GVNGVGK+T + K++  +   G KVML A DTFRS A++QLKI AD+ 
Sbjct: 352 KARGEVYSVLFLGVNGVGKSTSLAKVTYLLKCNGFKVMLIACDTFRSGAVEQLKIHADKL 411

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             +      G D +A+  E  K A+A   D ++IDTAGR+ +N  LM  + K+I V    
Sbjct: 412 GVELFERGYGKDPSAICREGLKHARANSYDAVLIDTAGRMQDNEPLMTALAKLIHV---- 467

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT-------------GLIMTKMDGT-AR 271
             + PH +L V +A  G +A+ Q+  F+                   G+++TK D    +
Sbjct: 468 --NNPHLLLFVGEALVGNDAVDQLRKFNQAIQKMGDSSDELRGRKIDGIVLTKFDTVDDK 525

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            G  + +      PV F+G G+   +L      D    +T
Sbjct: 526 VGAALSMCYITGQPVVFVGTGQTYTNLAKLEIDDVVRALT 565


>gi|73542631|ref|YP_297151.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ralstonia
           eutropha JMP134]
 gi|72120044|gb|AAZ62307.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ralstonia
           eutropha JMP134]
          Length = 462

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +   K V+  + D +R AAI QLK  +++  A+F
Sbjct: 106 PAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGAEF 165

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+       +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK      
Sbjct: 166 FPSQPDQKPVDIARAAVDWARKHYHDVLIVDTAGRLGIDEAMMQEIAALHAELK------ 219

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+
Sbjct: 220 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHVTGRPIKFV 279

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE ++ LEPF     +  I G  D
Sbjct: 280 GVGEKLDGLEPFYPDRMAQRILGMGD 305


>gi|167376693|ref|XP_001734103.1| signal recognition particle receptor alpha subunit [Entamoeba
           dispar SAW760]
 gi|165904558|gb|EDR29773.1| signal recognition particle receptor alpha subunit, putative
           [Entamoeba dispar SAW760]
          Length = 488

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 158/326 (48%), Gaps = 49/326 (15%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M  Q+    + S + K+  GF  T +        I  +  L+    E++E +LI  ++  
Sbjct: 172 MKKQEKPKSNGSTLSKIFAGFNGTRI--------IDEAESLEQA--EKIEKMLIEKNVNS 221

Query: 61  AVAQKI---VEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLS----------KPFNWD 106
            +A +I   ++ LL  +     +++  V+  V+E++ +++ P S          K  N D
Sbjct: 222 EIAAQIKSNIQTLLNGKKVDTFTLRGTVIQGVTEVLTRIMTPTSPIDVAKEISEKKANGD 281

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
                + ++ +GVNGVGK+T + K++  ++    KVM+AA DTFR+ A+DQL + A +  
Sbjct: 282 V----YTMVFLGVNGVGKSTSLSKMACWLTSLNYKVMIAACDTFRAGAVDQLAVHAQKLG 337

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                    +D +A+A  A K+A+    DVL++DTAGR+  N  LM  I K++       
Sbjct: 338 ITLYEKGYDTDPSAIARNALKRAKEDGYDVLLVDTAGRMQGNDALMKAIAKLV------- 390

Query: 227 PHAPHS--VLQVLDATTGQNALRQVEMFHAV----------AGTTGLIMTKMDGT-ARGG 273
            H+  +  VL V +A  G +A+ Q+  F+             G  G+I+TK D    + G
Sbjct: 391 -HSAQTDLVLFVAEALVGNDAVNQLTTFNRYIIDYAPNKQSKGVNGIILTKFDTIDDKVG 449

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLE 299
             I +     IP+ F+G G+   DL+
Sbjct: 450 AAISLTYCTGIPILFVGSGQHYTDLK 475


>gi|330826381|ref|YP_004389684.1| signal recognition particle protein [Alicycliphilus denitrificans
           K601]
 gi|329311753|gb|AEB86168.1| signal recognition particle protein [Alicycliphilus denitrificans
           K601]
          Length = 459

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QLK    +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S        +A  A   A+    DVL++DTAGRL  + +LM  I  +  VL    
Sbjct: 157 AEWFPSSPDQKPRDIALAALDYARKHYFDVLLVDTAGRLAIDELLMQEIKDLHAVLN--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+
Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRAITGAPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GV E I+ LE F A+  +  + G  D
Sbjct: 271 KFAGVSEKIDGLEVFDAQRHAGRVLGMGD 299


>gi|322806714|emb|CBZ04283.1| signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)
           [Clostridium botulinum H04402 065]
          Length = 449

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 144/285 (50%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           +S + + + +RE ++  L+ +D+   V +  ++ +  K    +V       Q+V+  V+E
Sbjct: 23  LSEKDIKEAMRE-VKLALLEADVNYKVVKNFIKSVTEKCMGNEVLQSLTPGQQVIKIVNE 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + +++       N   S    VI++VG+ G GKTT+ GKL+  +     + +L A D +
Sbjct: 82  ELTELMGSTESTLNSSTSGLT-VIMLVGLQGAGKTTMAGKLALHLRKRNKRPLLVACDVY 140

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI QL++   +            +   ++  A + A+  K +V+IIDTAGRLH +  
Sbjct: 141 RPAAIKQLQVVGKQIDIPVFTMGDKLNPVDISKAAIEHAKNNKNNVVIIDTAGRLHIDEE 200

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +  +   +       P  +L V+DA TGQ+A+     F+     +G+I+TK+DG  
Sbjct: 201 LMDELHNIKEEVN------PSEILLVVDAMTGQDAVNVANNFNDKLDISGVILTKLDGDT 254

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+G+GE +NDLE F     ++ I G  D
Sbjct: 255 RGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRILGMGD 299


>gi|4140392|gb|AAD11975.1| signal receptor alpha subunit [Giardia intestinalis]
          Length = 571

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 14/197 (7%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+VI + GVNGVGKTT I KL     + G + ++ A D+FRS A++QL+   +R  A  
Sbjct: 366 RPYVICMTGVNGVGKTTSIAKLLYIFKNNGSRSLVCACDSFRSGAVEQLQEHCNRLGATL 425

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                G +A+A+A    K+A++   D+ +IDT GR +NN  LM  +G ++        +A
Sbjct: 426 YSQGYGKNASAIAKYGIKEAESLNYDICLIDTTGRQYNNGPLMQALGALVL------ENA 479

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAV-------AGTTGLIMTKMDGTA-RGGGLIPIVVT 281
           P  VL V +A TG   + Q++ F           G  G+I+TK D    + G  + +   
Sbjct: 480 PDVVLFVGEALTGNEGVEQLKQFDCALKSYTNSRGIDGIILTKFDTCGDKVGAALNLCFV 539

Query: 282 HKIPVYFLGVGEGINDL 298
             +P+ ++G G+   D 
Sbjct: 540 CDLPILYVGTGQSYPDF 556


>gi|156741648|ref|YP_001431777.1| signal recognition particle protein [Roseiflexus castenholzii DSM
           13941]
 gi|156232976|gb|ABU57759.1| signal recognition particle protein [Roseiflexus castenholzii DSM
           13941]
          Length = 444

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 143/283 (50%), Gaps = 15/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV-LYDVSELIHKMLM 97
           ++ VRE ++ +   L+ +D+ + V ++ V  +  K   ++V+        V +++H+ L+
Sbjct: 24  EEDVREAMKQVRIALLEADVNLKVVREFVARVTEKAVGEEVTKSLTPAQQVIKIVHQELI 83

Query: 98  PLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            L    N   +     P +I+++G+ G GKTT   KL+  +   G + +L A D +R AA
Sbjct: 84  DLLGQANVPLAEARPGPTIIMLIGLQGSGKTTTAAKLALWLRKKGKRPLLVAADIYRPAA 143

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           I QL+    +           S    +A  A ++A+ + +  +IIDTAGRL  +  LM  
Sbjct: 144 ITQLESLGRQLGIPVHSEGAQSRPPDIARNAVRRARDESITHVIIDTAGRLQIDEPLMVE 203

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + ++   ++      P   L V+DA  GQ A+R  E F+   G TG+I TK+DG ARGG 
Sbjct: 204 LEQINAAVE------PVERLLVVDAMIGQEAVRVAEEFNRRVGLTGIIFTKIDGDARGGA 257

Query: 275 LIPIVVTHKIPVYFLGVGEGI--NDLEPFVAKDFSAVITGCLD 315
            + +     +P+ FLG GE +  + +EPF     ++ I G  D
Sbjct: 258 ALSVRAVTGVPIKFLGSGEKVEASTIEPFHPDRLASRILGMGD 300


>gi|1711509|sp|P49971|SR541_SOLLC RecName: Full=Signal recognition particle 54 kDa protein 1;
           Short=SRP54
 gi|556900|emb|CAA84275.1| 54-kD signal recognition particle (SRP) specific protein [Solanum
           lycopersicum]
          Length = 496

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 129/264 (48%), Gaps = 12/264 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L+R D+   + + +  E L   + K   +Q+ +Y+  EL  K+L P    F      +P 
Sbjct: 48  LVR-DMSTNIKKIVNLEDLAAGHNKRRIIQQAVYN--ELC-KILDPGKPAFTLK-KGKPS 102

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-C 171
           V++ VG+ G GKTT   K +      G K  L   DTFR+ A DQLK  A +    F   
Sbjct: 103 VVMFVGLQGSGKTTTCTKYAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S   SD   +A +  +  + +  D++I+DT+GR    + L   + ++    K      P 
Sbjct: 163 SYTESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAQK------PD 216

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V+ V+D++ GQ A  Q + F        +I+TKMDG A+GGG +  V   K PV F+G 
Sbjct: 217 LVIFVMDSSIGQAAFDQAQAFRQSVAVGAVIVTKMDGHAKGGGALSRVAATKSPVIFIGT 276

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE +++ E F  K F + + G  D
Sbjct: 277 GEHMDEFEVFDVKPFVSRLLGMGD 300


>gi|332185681|ref|ZP_08387428.1| signal recognition particle protein [Sphingomonas sp. S17]
 gi|332014039|gb|EGI56097.1| signal recognition particle protein [Sphingomonas sp. S17]
          Length = 506

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 139/273 (50%), Gaps = 17/273 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+++  +   ++V       Q+V+  V + +  ML   +     D 
Sbjct: 38  LLEADVALPVARDFVDKVTEQAIGQNVLRSITPGQQVVKIVHDALVDMLGADASELLLDV 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWA 162
           +  P V+++VG+ G GKTT   K++K++S   +     KV++A+ D  R AA +QL    
Sbjct: 98  TP-PAVVMMVGLQGSGKTTTTAKIAKRLSSGAMGRERKKVLMASLDVNRPAAQEQLATLG 156

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +     +    G     +A  A + A+ +  DVL++DTAGRLH +  LM  +  +  + 
Sbjct: 157 TQVEVSTLPIIAGQQPVEIARRALQAAKLQGYDVLMLDTAGRLHVDQALMDEMKAVAEIA 216

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           +      P  +L V+D+ TGQ+A+     F      TG+++T+MDG ARGG  + +    
Sbjct: 217 Q------PQEILLVVDSLTGQDAVNVATSFSEQVPLTGVVLTRMDGDARGGAALSMRAVT 270

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F GVGE ++ LE F  +  +  I G  D
Sbjct: 271 GKPIKFAGVGEKMDALEAFHPERVAGRILGMGD 303


>gi|260890999|ref|ZP_05902262.1| signal recognition particle protein [Leptotrichia hofstadii F0254]
 gi|260859026|gb|EEX73526.1| signal recognition particle protein [Leptotrichia hofstadii F0254]
          Length = 445

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+++ G+ G GKTT  GKL+K +   G K  L   D +R AA  QLK+  ++      
Sbjct: 100 PTVVMLSGLQGAGKTTFSGKLAKHLKSKGEKPFLIGADVYRPAAKKQLKVLGEQVKVPVF 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +  +DA  +  +  + ++ +    +IIDTAGRLH +  LM+ +  +       D   P
Sbjct: 160 TIDESTDALEIVKQGIEASKTEHATYVIIDTAGRLHIDEQLMSELQDI------KDSFNP 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           + +L V+D  TGQ+A+   + F+     TG+++TK+DG  RGG  + +      P+ F+ 
Sbjct: 214 NEILLVVDGMTGQDAVNVAKEFNEQLDITGVVLTKLDGDTRGGAALSVKEVAGKPIKFIS 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE ++D+ PF     ++ I G  D
Sbjct: 274 EGEKLDDIAPFHPDRLASRILGMGD 298


>gi|222112106|ref|YP_002554370.1| signal recognition particle protein [Acidovorax ebreus TPSY]
 gi|221731550|gb|ACM34370.1| signal recognition particle protein [Acidovorax ebreus TPSY]
          Length = 459

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QLK    +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S      + +A  A   A+    DVL++DTAGRL  + +LM  I  +  VL    
Sbjct: 157 AEWFPSTPDQKPSDIALGALDYAKKHFFDVLLVDTAGRLAIDEVLMQEIKDLHAVLN--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+
Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GV E I+ LE F A+  +  I G  D
Sbjct: 271 KFAGVSEKIDGLEVFDAERHAGRILGMGD 299


>gi|306831354|ref|ZP_07464514.1| signal recognition particle protein [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304426590|gb|EFM29702.1| signal recognition particle protein [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 521

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q+++  V+E + ++L   S+    + S + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQIVKIVNEELTEILG--SETAELEKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187
           L+ K+  D   + ++ A D +R AAIDQLK     +  +    ++G+D +A  +      
Sbjct: 121 LANKLIKDENARPLMIAADIYRPAAIDQLKTLG--SQINVPVFDMGTDHSAVEIVTNGLA 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+    D +IIDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QAKENHNDYVIIDTAGRLQIDEKLM----EELRDVKAL--ANPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S
Sbjct: 233 VADEFNKQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|313665439|ref|YP_004047310.1| signal recognition particle protein [Mycoplasma leachii PG50]
 gi|312949459|gb|ADR24055.1| signal recognition particle protein [Mycoplasma leachii PG50]
          Length = 447

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 145/283 (51%), Gaps = 18/283 (6%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           ++ ++E L+++   L+ +D+ +   ++I+  +  K     +     + Q+++  V E + 
Sbjct: 26  EENIKETLKEIRLSLLEADVNIEATKEIINNVKQKALGGYIFEGANAHQQMIKIVHEELV 85

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRS 152
            +L   + P   + + +P V+++VG+ G GKTT   KL+  ++    K +L  G D +R 
Sbjct: 86  NILGKENAPL--ELNKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRP 143

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI+QL     +T+   V  +   D    A EA + AQ    DV+I+DTAGRL  + +LM
Sbjct: 144 GAIEQLIQLGQKTNTQ-VFEKGKQDPILTAQEALEYAQENNFDVVILDTAGRLQVDQVLM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +  + +        +P  +L V+D  +GQ  +     F++    +G+++TK+DG ARG
Sbjct: 203 TELDNLKK------KTSPSEILLVVDGMSGQEIINVTNEFNSKLKLSGVVVTKLDGDARG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + I    K+P+ F+G GEG N L  F  K  +  + G  D
Sbjct: 257 GATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGD 299


>gi|170695319|ref|ZP_02886465.1| signal recognition particle protein [Burkholderia graminis C4D1M]
 gi|170139719|gb|EDT07901.1| signal recognition particle protein [Burkholderia graminis C4D1M]
          Length = 455

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK   ++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             SE       +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSEPDQKPVDIARAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEITALHTTLK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGRPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFYPDRMANRILGMGD 303


>gi|153940237|ref|YP_001391747.1| signal recognition particle protein [Clostridium botulinum F str.
           Langeland]
 gi|170754416|ref|YP_001781992.1| signal recognition particle protein [Clostridium botulinum B1 str.
           Okra]
 gi|152936133|gb|ABS41631.1| signal recognition particle protein [Clostridium botulinum F str.
           Langeland]
 gi|169119628|gb|ACA43464.1| signal recognition particle protein [Clostridium botulinum B1 str.
           Okra]
 gi|295319772|gb|ADG00150.1| signal recognition particle protein [Clostridium botulinum F str.
           230613]
          Length = 449

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 144/285 (50%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           +S + + + +RE ++  L+ +D+   V +  ++ +  K    +V       Q+V+  V+E
Sbjct: 23  LSEKDIKEAMRE-VKLALLEADVNYKVVKNFIKSVTEKCMGNEVLESLTPGQQVIKIVNE 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + +++       N   S    VI++VG+ G GKTT+ GKL+  +     + +L A D +
Sbjct: 82  ELTELMGSTESTLNSSTSGL-TVIMLVGLQGAGKTTMAGKLALHLRKRNKRPLLVACDVY 140

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI QL++   +            +   ++  A + A+  K +V+IIDTAGRLH +  
Sbjct: 141 RPAAIKQLQVVGKQIDIPVFTMGDKLNPVDISKAAIEHAKNNKNNVVIIDTAGRLHIDEE 200

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +  +   +       P  +L V+DA TGQ+A+     F+     +G+I+TK+DG  
Sbjct: 201 LMDELHNIKEEVN------PSEILLVVDAMTGQDAVNVANNFNDKLDISGVILTKLDGDT 254

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+G+GE +NDLE F     ++ I G  D
Sbjct: 255 RGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRILGMGD 299


>gi|302554422|ref|ZP_07306764.1| signal recognition particle protein [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472040|gb|EFL35133.1| signal recognition particle protein [Streptomyces viridochromogenes
           DSM 40736]
          Length = 545

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 142/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++ L  +    +VS      Q+VL  V+E +  +L 
Sbjct: 57  DATAREIRIALLEADVALPVVRTFIKNLKERALGAEVSRALNPAQQVLKIVNEELVTILG 116

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL + + + G   +L A D  R  A++Q
Sbjct: 117 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKEQGHSPLLVAADLQRPNAVNQ 175

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+ K  D++I+DTAGRL  +  +M  
Sbjct: 176 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEHARTKVHDIVIVDTAGRLGIDQEMMQQ 235

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 236 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 289

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GE ++D + F     ++ I   LD G+
Sbjct: 290 ALSIRQITGKPIMFASNGEKLDDFDAFHPDRMASRI---LDMGD 330


>gi|255506597|ref|ZP_05382236.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis D(s)2923]
 gi|289525070|emb|CBJ14540.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis Sweden2]
 gi|296434610|gb|ADH16788.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis E/150]
 gi|296438328|gb|ADH20481.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis E/11023]
          Length = 448

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 9/204 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           P VIL+ G+ G GKTT   KL+          KV++A+ D  R +A++QL+    +T AD
Sbjct: 99  PAVILLCGLQGAGKTTTCAKLADYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGAD 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F     G+D   +A EA + A+++  D++++DTAGRLH +  LM  +  + RV       
Sbjct: 159 FF-RRKGNDPVDMAAEAVQHAKSQGYDLVLVDTAGRLHVDDALMDELVAIARV------T 211

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           +P   L V++   GQ+A+   + F    G TG++++  DG AR G ++ +      P+ F
Sbjct: 212 SPCETLFVMNLAMGQDAVVTAKAFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312
            G GE I DL PF A+  +  I G
Sbjct: 272 EGCGEKIKDLRPFNAQSMAERILG 295


>gi|324994452|gb|EGC26365.1| signal recognition particle protein [Streptococcus sanguinis SK678]
          Length = 524

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G+D  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTDVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|303248436|ref|ZP_07334695.1| signal recognition particle protein [Desulfovibrio fructosovorans
           JJ]
 gi|302490147|gb|EFL50066.1| signal recognition particle protein [Desulfovibrio fructosovorans
           JJ]
          Length = 505

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 130/267 (48%), Gaps = 10/267 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPL--SKPFNWDFSH 109
           L+ +D+   V +  V+ +  +   +DV         V +++H  ++ L   +    D   
Sbjct: 38  LLEADVNFKVVKDFVDRVRERAMGQDVLKSLTPGQQVVKIVHDEMVELLGGEARELDLKA 97

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            P VI+VVG+ G GKTT   KL+ K+  +   K  L   D +R AAIDQL   A +   +
Sbjct: 98  SPAVIMVVGLQGSGKTTTCAKLALKLRRELKRKPYLVPADVYRPAAIDQLHKLASQLDIE 157

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
              S    +   +   A ++A+    DV+++DTAGRLH +  LM  +  +          
Sbjct: 158 AFPSTTDQNPVDICTAALEEAKRTGHDVVLLDTAGRLHVDEALMEELSAIKA------KT 211

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +L V DA TGQ+A+     F+   G TG+++TKMDG ARGG  + +       + F
Sbjct: 212 GPGEILFVADAMTGQDAVTVASSFNDRLGVTGVVLTKMDGDARGGAALSVRQVTGKSIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE ++DLE F     ++ I G  D
Sbjct: 272 VGTGEKVSDLEVFHPDRVASRILGMGD 298


>gi|291535144|emb|CBL08256.1| signal recognition particle protein [Roseburia intestinalis M50/1]
 gi|291539673|emb|CBL12784.1| signal recognition particle protein [Roseburia intestinalis XB6B4]
          Length = 360

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 159/304 (52%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++ S  RL +D V+  L+++   L+ +D+   V ++ V+++  +   
Sbjct: 3   FDSLSEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKQFVKDVQERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + +++   +            +I++ G+ G GKTT   K+
Sbjct: 63  QDVMNGLNPGQMVIKIVNEEMVRLMGSETTEIALRPGKELTIIMMAGLQGAGKTTTTAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G KV+LAA D +R AAI+QL+I  ++   +       +    +A  A + A  
Sbjct: 123 AGKLKAKGKKVLLAACDVYRPAAIEQLQINGEKQGVEVFSMGDKNTPVNIAKAAVEHATK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +VLIIDTAGRLH +  +MA   ++I++ + +   A    + V+DA TGQ+A+   + 
Sbjct: 183 NDFNVLIIDTAGRLHVDEDMMA---ELIQIKENV---AVSQTILVVDAMTGQDAVNVAKT 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+++TK+DG  RGG  + I      P+ + G+GE ++DLE F     ++ I 
Sbjct: 237 FDEKIGIDGVVLTKLDGDTRGGAALSIRAVTGKPILYAGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|261367302|ref|ZP_05980185.1| signal recognition particle protein [Subdoligranulum variabile DSM
           15176]
 gi|282570905|gb|EFB76440.1| signal recognition particle protein [Subdoligranulum variabile DSM
           15176]
          Length = 451

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 138/270 (51%), Gaps = 16/270 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   VA+    ++  +   ++V       Q+V+  V+E + K LM   +P     
Sbjct: 39  LLEADVNYKVAKDFCAQVSERAMGQEVMESLTPAQQVVKIVNEELTK-LMGGDEPQYLHI 97

Query: 108 SHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            ++   V+++ G+ G GKTT   KL K     G + +L A D +R AAI QL+I  ++  
Sbjct: 98  KNKGQTVLMMCGLQGNGKTTHAAKLGKYYRSQGRRPLLVACDVYRPAAIQQLQIVGEQAG 157

Query: 167 ADFVCSEIGSDAAA-LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                  +G++    +A +A   A+    D++I+DTAGRL  +  LM    +++R+ + +
Sbjct: 158 VPVFT--MGTEKPEHIAQQAMAHARDHGNDIVILDTAGRLQIDDALM---DELVRIKEAV 212

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           +       L V+DA  GQ A+   + F+   G TG+++TK DG  RGG  + ++     P
Sbjct: 213 EVD---ETLLVVDAMAGQEAVNVAKTFNEKIGITGVVLTKTDGDTRGGAALSVLAVTGKP 269

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +YF G GE + DLEPF     ++ I G  D
Sbjct: 270 IYFQGTGEKLEDLEPFYPSRMASRILGMGD 299


>gi|225683852|gb|EEH22136.1| signal recognition particle receptor subunit alpha
           [Paracoccidioides brasiliensis Pb03]
          Length = 554

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 138/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIG----VAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +E+ L++ ++     V + + +V EL+ K+ A   S+   L    E  + K+L P S   
Sbjct: 265 MEEHLLKKNVAREAAVRLCEGVVHELVGKKTASFQSIDSALRSAMESSLRKILTPTSSLD 324

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P +     RP+VI +VGVNGVGK+T + K+   +     +V++ A DTFR
Sbjct: 325 LLREIEAVTSPSSSQRQRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLITACDTFR 384

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A   A A   DV++ID
Sbjct: 385 SGAVEQLRVHA-RNLQELSSRENVGHVGLYQKGYGKDAANVAKDAVAYATANSFDVVLID 443

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH----AVA 256
           TAGR HN+  LM+ + K  +  +      P  +  V +A  G +++ Q   F+    A  
Sbjct: 444 TAGRRHNDQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGAGR 497

Query: 257 GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
           G  G I++K D      G L+ +V    IP+ FLG+G+   DL
Sbjct: 498 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGIGQHYGDL 540


>gi|209559470|ref|YP_002285942.1| Signal recognition particle, subunit Ffh SRP54 [Streptococcus
           pyogenes NZ131]
 gi|209540671|gb|ACI61247.1| Signal recognition particle, subunit Ffh SRP54 [Streptococcus
           pyogenes NZ131]
          Length = 520

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 159/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FENLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187
           L+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  +  +
Sbjct: 121 LANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+  + D ++IDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     S
Sbjct: 233 IAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|190893804|ref|YP_001980346.1| signal recognition particle GTP-binding protein [Rhizobium etli
           CIAT 652]
 gi|190699083|gb|ACE93168.1| signal recognition particle GTP-binding protein [Rhizobium etli
           CIAT 652]
          Length = 525

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT   K++ ++S     KV++A+ DT R AA +QL+    + S D 
Sbjct: 100 PVVVMMVGLQGSGKTTTTAKIAHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQASIDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM    +M  + KR +PH 
Sbjct: 160 LPIIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMV---EMADIKKRSNPH- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              +L V D+ TGQ+A+     F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 216 --EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE +++LE F  +  +  I G  D
Sbjct: 274 GVGEKMSELEEFHPRRIADRILGMGD 299


>gi|159478459|ref|XP_001697320.1| chloroplast SRP54 subunit of signal recognition particle
           [Chlamydomonas reinhardtii]
 gi|158274478|gb|EDP00260.1| chloroplast SRP54 subunit of signal recognition particle
           [Chlamydomonas reinhardtii]
          Length = 549

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 113/213 (53%), Gaps = 14/213 (6%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL-KIWADR 164
           +  HR     V G  GVGKTT  GKL+  +  A    +L A D +R AAIDQL K+ A  
Sbjct: 162 EVGHR--AACVHGARGVGKTTAAGKLALYLKKAKKSCLLVATDVYRPAAIDQLVKLGA-- 217

Query: 165 TSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            + D    E+G+D +   +A +  ++A+   VD +IIDTAGRL  +  +MA +  +   +
Sbjct: 218 -AIDVPVFEMGTDVSPVEIAKKGVEEARRLGVDAVIIDTAGRLQVDEGMMAELRDVKSAV 276

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           +      P   L V+DA TGQ A   V  F+     +G I+TKMDG +RGG  + +    
Sbjct: 277 R------PSDTLLVVDAMTGQEAANLVRSFNEAVDISGAILTKMDGDSRGGAALSVREVS 330

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+GVGE +  LEPF  +  ++ I G  D
Sbjct: 331 GKPIKFVGVGEKMEALEPFYPERMASRILGMGD 363


>gi|330933421|ref|XP_003304165.1| hypothetical protein PTT_16633 [Pyrenophora teres f. teres 0-1]
 gi|311319393|gb|EFQ87728.1| hypothetical protein PTT_16633 [Pyrenophora teres f. teres 0-1]
          Length = 541

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 149/301 (49%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVA----QKIVEELLTKRYAKD 78
           ++   +TD+  S  LD    D + +E+ + L+ +D+ V +     Q I   +  K  A  
Sbjct: 9   RINAAVTDLTRSPNLDEKAFDAMVKEISNALVEADVNVKLVMNLRQSIKRTVDFKHLAPG 68

Query: 79  VS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           V+    +Q+ ++D  EL+ KM+ P ++PF      + +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVFD--ELV-KMVDPHAEPFKPR-KGKSNVIMFVGLQGAGKTTTCTKLARW 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D   +A E  ++ + ++ 
Sbjct: 125 YQARGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSHTQTDPVVVAGEGVEKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +++I+DT+GR      L   + ++  V+       P   + VLD T GQ A  Q   F  
Sbjct: 185 EIIIVDTSGRHRQEKDLFDEMVQIQNVV------TPDQTIMVLDGTIGQAAESQARAFKE 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  + F + + G  
Sbjct: 239 AADFGAIIITKTDGAAAGGGAISAVAATHTPIVFLGNGEHMLDLERFAPQAFVSKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|268680269|ref|YP_003304700.1| signal recognition particle protein [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268618300|gb|ACZ12665.1| signal recognition particle protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 446

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 137/266 (51%), Gaps = 6/266 (2%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E L+  L+++D+   + + ++ E+  +  AK +     L  +   + ++L    +     
Sbjct: 30  ENLKKALLKADVHHKIVRDLLREVEIETKAKGIGQANFLRALKTNLTQILTVSGRQGFVF 89

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            S  P  +L+VG+ G GKTT   KL+  +     KV++ A D  R AA++QLK       
Sbjct: 90  ASKPPTTVLMVGLQGSGKTTTTVKLANYLKLKQKKVLVVACDLQRLAAVEQLKQLCGANE 149

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D    +  ++  A+A  A ++A+A   DV+++DTAGRL  ++ LM    + +  +K+  
Sbjct: 150 IDLYFEDESANPIAIAKNAMQKARAGLYDVVLVDTAGRLAIDTELM----EQLEAIKK-- 203

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  +  V D+ TGQ+A+R    FH     +G+I++K DG  +GG  + I     +P+
Sbjct: 204 EVLPDEIFYVADSMTGQDAVRSAVTFHEKITLSGVILSKFDGDGKGGVALGIAEQTNVPL 263

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITG 312
            F+GVGE + DLE F+ +   + + G
Sbjct: 264 RFIGVGEKVADLEHFIPERIVSRLMG 289


>gi|227495312|ref|ZP_03925628.1| signal recognition particle [Actinomyces coleocanis DSM 15436]
 gi|226831182|gb|EEH63565.1| signal recognition particle [Actinomyces coleocanis DSM 15436]
          Length = 524

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 142/288 (49%), Gaps = 26/288 (9%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSELIHK 94
           D    E+   L+ +D+ + V ++ V  +  K     V+        V RV++D  EL+ +
Sbjct: 28  DATASEIRRALLDADVALPVVRQFVSAVKEKALGATVTQGLKPGQQVVRVVHD--ELV-E 84

Query: 95  MLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           +L   ++  +  F+ R P + ++ G+ G GKTT+ GKL+K M     +V+L A D  R  
Sbjct: 85  ILGGETRELH--FAQRGPTIFMLAGLQGAGKTTLAGKLAKWMRSENKRVLLVAADLQRPN 142

Query: 154 AIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           A++QL++   R   +    E G+   D   +A      A     D++I+DTAGRL  +  
Sbjct: 143 AVNQLQVMGQRAGVEVWAPEPGNGVGDPVQVARTGVNHAIENGFDLVIVDTAGRLGIDEE 202

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M     +   +       PH VL VLDA  GQ+A++    F    G TG++++K+DG A
Sbjct: 203 MMQQARNIREAIN------PHEVLFVLDAMVGQDAVQTSVAFRDGVGFTGVVLSKLDGDA 256

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           RGG  + +      P+ F   GEG++D E F     ++ I   LD G+
Sbjct: 257 RGGAALSVRGVTGQPILFASTGEGLDDFERFHPDRMASRI---LDMGD 301


>gi|262037316|ref|ZP_06010787.1| signal recognition particle protein [Leptotrichia goodfellowii
           F0264]
 gi|261748664|gb|EEY36032.1| signal recognition particle protein [Leptotrichia goodfellowii
           F0264]
          Length = 445

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P ++++ G+ G GKTT  GKLSK +   G    L   D +R AA  QLK+ A++      
Sbjct: 100 PTIVMLSGLQGAGKTTFAGKLSKHLKSKGESPFLIGADVYRPAAKKQLKVLAEQVKVPSF 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +  +D   +  +  ++A+      +IIDTAGRLH +  LM  +  +           P
Sbjct: 160 TIDESTDVIEICKKGIEEAKNAHATYVIIDTAGRLHVDEQLMEELQNIKSTFN------P 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H +L V+D  TGQ+A+   + F+     TG+++TK+DG  RGG  + +      P+ F+ 
Sbjct: 214 HEILLVVDGMTGQDAVNVAKTFNDRLDITGVVLTKLDGDTRGGAALSVKEVAGKPIKFIS 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE ++D+ PF     ++ I G  D
Sbjct: 274 EGEKLDDIAPFHPDRLASRILGMGD 298


>gi|121606268|ref|YP_983597.1| signal recognition particle protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120595237|gb|ABM38676.1| signal recognition particle subunit FFH/SRP54 (srp54) [Polaromonas
           naphthalenivorans CJ2]
          Length = 452

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QLK+   +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKVVTKQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S      A +A  A   A+    DVL++DTAGRL  +  LM  I ++  +LK   
Sbjct: 157 AEWFPSTPDQKPADIARAALDYAKRHFFDVLLVDTAGRLAIDEALMNEIKELHAILK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+I+TK DG +RGG  + +      P+
Sbjct: 214 ---PIETLFVVDAMQGQDAVNTAKAFKEALPLTGIILTKTDGDSRGGAALSVRQITGAPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G  E ++ LE F A+  +  I G  D
Sbjct: 271 KFSGTSEKLDGLEVFDAERHAGRILGMGD 299


>gi|309358215|emb|CAP34405.2| hypothetical protein CBG_16436 [Caenorhabditis briggsae AF16]
          Length = 496

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 145/300 (48%), Gaps = 29/300 (9%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---------VEELL----TKRY 75
           K G   +I+   LD  ++E +   LI SD+ + + +++          EE++     +RY
Sbjct: 16  KLGQNTVINEEELDLMLKE-VCTALIESDVHIRLVKQLKDNVKNAINFEEIVGGANKRRY 74

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +Q+ +++  EL+ K++ P   PF      R +V + VG+ G GKTT   K++   
Sbjct: 75  -----IQKTVFN--ELL-KLVDPGVTPFTPTKGKR-NVFMFVGLQGSGKTTTCSKMAYYY 125

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++   +  +
Sbjct: 126 QRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFTKEGFE 185

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++I+DT+GR    + L     +M++V   +    P +V+ V+DA+ GQ    Q   F   
Sbjct: 186 IIIVDTSGRHKQEASLFE---EMLQVSNAV---TPDNVVFVMDASIGQACEAQARAFSQT 239

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +I+TK+D  A+GGG +  V   K PV F+G GE I+D E F  K F   + G  D
Sbjct: 240 VDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLLGMGD 299


>gi|210615865|ref|ZP_03290827.1| hypothetical protein CLONEX_03046 [Clostridium nexile DSM 1787]
 gi|210150068|gb|EEA81077.1| hypothetical protein CLONEX_03046 [Clostridium nexile DSM 1787]
          Length = 449

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 154/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++ S  RL ++ V+  L+++   L+ +D+   V +  V+++  +   
Sbjct: 3   FDSLSEKLQNVFKNLRSKGRLTENDVKAALKEVKMALLEADVNFKVVKGFVKDVQERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +     +      VI++ G+ G GKTT   K+
Sbjct: 63  QDVMNGLNPGQMVIKIVNEELIKLMGSETTEIKLEPGQATTVIMMAGLQGAGKTTTTAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G K +L A D +R AAI QL+I  ++   +          A +A  A + A  
Sbjct: 123 AGKLKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSMGENHKPANIAKAALEHAAK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+     
Sbjct: 183 NGNNIVILDTAGRLHIDEDMMAELQEIKETV------TVHQTILVVDAMTGQDAVNVASS 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FNEKIGIDGVIVTKLDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|296111749|ref|YP_003622131.1| signal recognition particle protein Ffh [Leuconostoc kimchii IMSNU
           11154]
 gi|295833281|gb|ADG41162.1| signal recognition particle protein Ffh [Leuconostoc kimchii IMSNU
           11154]
          Length = 491

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 132/271 (48%), Gaps = 17/271 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+     +K V  +  K    D+       Q+++  V++ +   +   + P N   
Sbjct: 39  LLEADVNYDTVKKFVANVREKASGADILEGLNPAQQIVKIVNDELTATMGEEAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P +I++ G+ G GKTT + KL+ K+  ++  + +L A D +R AAIDQL+I      
Sbjct: 98  PKIPTIIMMAGLQGAGKTTTVAKLAYKLKKESQARPLLIAADVYRPAAIDQLEILG--RD 155

Query: 167 ADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            D    ++G++     +  +   QA   K D + IDTAGRL  + +LM  +  +  + K 
Sbjct: 156 LDIPVFQLGTEVNPRDIVRQGLAQAAENKNDYVFIDTAGRLQIDDVLMQELKDVAEIAK- 214

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  +L  +DA TGQNA    + F A    TG+++TK+DG  RGG  + I      
Sbjct: 215 -----PDEILLTVDAMTGQNAAETAKGFSASLDLTGVVLTKLDGDTRGGAALSIRDVTGK 269

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE   DL+ F     ++ I G  D
Sbjct: 270 PIKFVGQGEKPTDLDVFYPDRMASRILGMGD 300


>gi|297526052|ref|YP_003668076.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Staphylothermus hellenicus DSM 12710]
 gi|297254968|gb|ADI31177.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Staphylothermus hellenicus DSM 12710]
          Length = 444

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 102/203 (50%), Gaps = 6/203 (2%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V+L+VG+ G GKTT   KL+      G +V L   DT+R AA DQLK   ++        
Sbjct: 102 VMLLVGLQGSGKTTTAAKLAYYYKLEGYRVGLVTADTYRPAAYDQLKQLGEQIGVPVYGE 161

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               DA  +A    +   ++  D++I+DTAGR H    L+  + ++   +K      P  
Sbjct: 162 PNNKDAVEIARRGVEYFVSRGFDIVIVDTAGRHHREEDLLKEMREIAENIK------PDE 215

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V+ V+DA  GQ A    + FH       +I+TK+DGTA+GGG +  V      + F+G G
Sbjct: 216 VVLVIDAAIGQQAHNLAKKFHTATPIGSIIVTKLDGTAKGGGALSAVAVTGATIKFIGTG 275

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E I++LE F    F A I G  D
Sbjct: 276 EKIDELEVFRPPRFVARILGIGD 298


>gi|203288125|ref|YP_002223140.1| signal recognition particle protein [Borrelia recurrentis A1]
 gi|201085345|gb|ACH94919.1| signal recognition particle protein [Borrelia recurrentis A1]
          Length = 449

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 6/207 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           ++   IL++G+ G GKTT   KL+ ++     KV+L A DTFR+AAI+QLK+   + +  
Sbjct: 99  NKLSCILMLGLQGSGKTTTCAKLAMRLKSENRKVLLVAADTFRAAAIEQLKVLGAQINIS 158

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E       +  ++ + A+ +  D +IIDT GRL    +L+  I  +  ++      
Sbjct: 159 VFALENEDSPIKVVKKSIEYARVELFDTVIIDTRGRLEVEDLLLREIIDIKNIV------ 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   + V DA TGQ A+   + F+   G TG+I TK D  ARGG ++ +     +P+ F
Sbjct: 213 VPTETILVADAMTGQVAVNIAKKFNESVGITGVIFTKFDSDARGGAILSLKTICGVPIKF 272

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GVGE   DL+ F     S+ I G  D
Sbjct: 273 VGVGEKPEDLDVFYPDRVSSRILGMGD 299


>gi|254420786|ref|ZP_05034510.1| signal recognition particle protein [Brevundimonas sp. BAL3]
 gi|196186963|gb|EDX81939.1| signal recognition particle protein [Brevundimonas sp. BAL3]
          Length = 520

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 115/215 (53%), Gaps = 8/215 (3%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKI 160
           P N + +  P V+L+ G+ G GKTT   KL+ +++    K VM+A+ DT R AA++QL  
Sbjct: 93  PLNTNATP-PAVVLMAGLQGSGKTTTSAKLALRLTKFDRKKVMMASLDTRRPAAMEQLAQ 151

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
              +     +    G  A  +   A + A+ +  DVLI+DTAGR+  +  LM  + ++  
Sbjct: 152 LGKQIDVAVLPIVAGESAVQITRRALQSAKLQGFDVLILDTAGRITLDEGLMNEVAEVAE 211

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           + K      P   L V D+ TGQ+A+R    FHA    TGL++T+ DG  RGG ++ +  
Sbjct: 212 IAK------PVETLLVADSLTGQDAVRTAAAFHARLPLTGLVLTRADGDGRGGAMLSMRA 265

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              +P+ +LG GE ++ L+ F A+  +  I G  D
Sbjct: 266 VTGLPIKYLGAGEKVDALDVFDARRVAGRILGQGD 300


>gi|226430|prf||1512311A SRP protein 54kD
          Length = 504

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A E  ++ + +  +++I+DT+GR      L          L+  +   
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE------ERLQVSNAIQ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P +++ V+D+  GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 214 PDNIVYVMDSDIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 274 GTGEHIDDFEPFKTQPFISKLLGMGD 299


>gi|332670012|ref|YP_004453020.1| signal recognition particle protein [Cellulomonas fimi ATCC 484]
 gi|332339050|gb|AEE45633.1| signal recognition particle protein [Cellulomonas fimi ATCC 484]
          Length = 535

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 151/318 (47%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L     ++ +  RL     D    E+   L+ +D+ V V +     +  +  +
Sbjct: 2   FATLSDRLTSTFKNLRTKGRLSEADIDATVREIRRALLDADVAVPVVRSFTGAVRERALS 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V++ +  +L   ++P        P VIL+ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVVKIVNDELVAILGGQNRPLAM-AKRPPTVILLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-----------IGSDAAA 180
           +  + + G   +L A D  R  A+ QL++  +R                     G+D  A
Sbjct: 121 ALHLKNQGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPHPGNQGADDYLPAGADPVA 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A +  + A+ ++ DVLI+DTAGRL  ++ LM      IR     D   P  VL V+DA 
Sbjct: 181 VARQGLETARTRQHDVLIVDTAGRLGVDAELMQQASD-IR-----DAVEPDEVLFVIDAM 234

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ+A+   + F    G TG++++K+DG ARGG  + +      P+ F   GE + D E 
Sbjct: 235 IGQDAVATAQAFADGVGFTGVVLSKLDGDARGGAALSVASVTGRPILFASTGEKLTDFEV 294

Query: 301 FVAKDFSAVITGCLDYGE 318
           F     ++ I   LD G+
Sbjct: 295 FHPDRMASRI---LDMGD 309


>gi|187930124|ref|YP_001900611.1| signal recognition particle protein [Ralstonia pickettii 12J]
 gi|187727014|gb|ACD28179.1| signal recognition particle protein [Ralstonia pickettii 12J]
          Length = 471

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +   K V+  + D +R AAI QLK  +++  ADF
Sbjct: 114 PAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 173

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+       +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK      
Sbjct: 174 FPSQPDQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHAKLK------ 227

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+
Sbjct: 228 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGKPIKFV 287

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LEPF     +  I G  D
Sbjct: 288 GVAEKLDGLEPFYPDRMAQRILGMGD 313


>gi|29347011|ref|NP_810514.1| putative signal recognition protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572648|ref|ZP_04850049.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29338909|gb|AAO76708.1| putative signal recognition protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251837780|gb|EES65870.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 440

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 138/265 (52%), Gaps = 13/265 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKTFTDTVKEKAIGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
              +    +   RP VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AAI+
Sbjct: 86  MGGETVEINLESRPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++ A++            +   +A  A ++A+AK  D++I+DTAGRL  +  +M  I 
Sbjct: 146 QLRVLAEQIEVPMYSELDSKNPVEIAQHAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIT 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +   +       P  +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 206 AIKEAIN------PDEILFVVDSMTGQDAVNTAKEFNERLDFNGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I      P+ F+G GE ++ ++ F
Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQF 284


>gi|304415130|ref|ZP_07395856.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Candidatus Regiella insecticola LSR1]
 gi|304283012|gb|EFL91449.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Candidatus Regiella insecticola LSR1]
          Length = 453

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 140/287 (48%), Gaps = 18/287 (6%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           R  +D ++  L ++   L+ +D+ + V    +   L K  A    V + L    EL+  +
Sbjct: 21  RLTEDNIKNTLREIRIALLEADVALPVVNDFIN--LIKERAVGREVNKSLTPGQELVKIV 78

Query: 96  LMPLSKPF---NWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGD 148
              L+      N +    +  P VIL+ G+ GVGKTT + KL K + +   K V++ + D
Sbjct: 79  KDELTSAMGKVNSELNLATQPPAVILMAGLQGVGKTTSVAKLGKFLKEKQKKKVLVVSAD 138

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +R AAI QL+  A     DF  S +      +   A + A+ K  DVLI+DTAGRLH +
Sbjct: 139 VYRPAAIKQLETLAQGVGIDFFASNLHQKPIDIVNLALETAKLKFYDVLIVDTAGRLHVD 198

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M  I ++   +       P   L V+DA TGQ+A    + F+     TG+I+TK+DG
Sbjct: 199 ETMMDEIKQLHSAIN------PVETLFVVDAMTGQDAANIAKSFNDALPLTGVILTKVDG 252

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            ARGG  + I      P+ FLGVGE    LE F     ++ I G  D
Sbjct: 253 DARGGAALSIRHITGKPIKFLGVGEKSEALEAFHPDRVASRILGMGD 299


>gi|254689978|ref|ZP_05153232.1| Ffh, signal recognition particle protein [Brucella abortus bv. 6
           str. 870]
 gi|260755514|ref|ZP_05867862.1| signal recognition particle protein [Brucella abortus bv. 6 str.
           870]
 gi|260675622|gb|EEX62443.1| signal recognition particle protein [Brucella abortus bv. 6 str.
           870]
          Length = 523

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GK++K++++   K V++A+ DT R AA +QL+    +T  D 
Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTECQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM  +  + +         
Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+     F    G TG+++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
             GE ++ LE F  K  +  I G  D
Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299


>gi|158312999|ref|YP_001505507.1| signal recognition particle protein [Frankia sp. EAN1pec]
 gi|158108404|gb|ABW10601.1| signal recognition particle protein [Frankia sp. EAN1pec]
          Length = 521

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 148/307 (48%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +  T +    RL D        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FDTLSSRLDKVFTSLRGRGRLTDADIDATAREIRVALLEADVALPVVRGFVAAIRERARG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   +    +  +  P VIL+ G+ G GKTT+ GKL
Sbjct: 62  AEVSTSLNPAQQVIKIVNEELVAILGGGTTTLRFAKTP-PTVILLAGLQGTGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G   +L A D  R  A++QL++   R   +    E G+   D   +A +A   
Sbjct: 121 GRWLRAQGHTPLLVAADLQRPNAVNQLQVVGQRAGVEVFAPEPGNGVGDPVRVARDALAH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGRL  +  LM      IR     D  +P  +L VLDA  GQ+A+  
Sbjct: 181 ARRHVFDVVVVDTAGRLGVDEELMRQAAD-IR-----DAVSPDEILFVLDAMIGQDAVST 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G TG+++TK+DG ARGG  + +      P+ F   GE ++D + F  +  ++
Sbjct: 235 AQAFADGVGFTGVVLTKLDGDARGGAALSVARVTGAPIMFASTGETLDDFDVFHPERMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|327462217|gb|EGF08544.1| signal recognition particle protein [Streptococcus sanguinis SK1]
          Length = 524

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G+D  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTDVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|322411711|gb|EFY02619.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 520

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 158/308 (51%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187
           L+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  +  +
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+  + D ++IDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QARENRNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F+     TG+++TK+DG  RGG  + +      P+ + G GE I D+E F     S
Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKYTGTGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|71894046|ref|YP_278154.1| signal recognition particle [Mycoplasma synoviae 53]
 gi|71850834|gb|AAZ43443.1| signal recognition particle [Mycoplasma synoviae 53]
          Length = 455

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 142/283 (50%), Gaps = 25/283 (8%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV-----LYDVSELIHKMLMPL 99
           +  E++  L+ +D+ +    K+V+E ++K   K +S + +        ++++ H  L+ +
Sbjct: 30  ITREIKLALLEADVNL----KVVKEFISKVKEKALSSEIIGKLNPSQQMTKIFHDELVSI 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-----KKMSDAGLKVMLAAGDTFRS 152
              K        +P VI++ G+ G GKTT   KL+     KKM+ + L   L A D +R 
Sbjct: 86  LGGKIKEIKLDKKPTVIMMCGLQGSGKTTTAAKLAFYLRKKKMAASPL---LVAADIYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAIDQL   A     D+    I + A  +   A +QA+  K D++IIDTAGRL  +  LM
Sbjct: 143 AAIDQLVSLAKSAQMDYFQMGINTPAEDIVKAALEQARDNKNDLIIIDTAGRLSIDEKLM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +  + ++       +P  +L V DA +GQ+ +     FH     +G I+TK+D  ARG
Sbjct: 203 QELWNIKQI------ASPEEILFVADALSGQDIINVASAFHDKLKLSGSIITKLDSDARG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + I     +P+ F+G GE I++++ F     +  I G  D
Sbjct: 257 GAALSIRFILNLPIKFIGTGEKISNIDLFYPDRMADRILGMGD 299


>gi|300706383|ref|XP_002995462.1| hypothetical protein NCER_101628 [Nosema ceranae BRL01]
 gi|239604578|gb|EEQ81791.1| hypothetical protein NCER_101628 [Nosema ceranae BRL01]
          Length = 466

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 146/292 (50%), Gaps = 17/292 (5%)

Query: 32  ITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV---SVQRVL 85
           ++ + SS   DD ++  ++D+   LI S++   + +KI   L  K  ++++   + Q+V+
Sbjct: 13  LSRLFSSNITDDSIKYIIDDICTSLINSNVNPMLVEKIRNNLNEKILSENIQGFNKQKVI 72

Query: 86  YDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
                +EL+  ++ P  K    +   + +V++ VG+ G GKTT I K +      GLKV 
Sbjct: 73  ETAVFNELVS-LVDPKIKSKELE-KGKSNVVVFVGLQGAGKTTSICKYANYYKKKGLKVA 130

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L   DTFR+ A +Q+K  A +    F  SE  +D   +A E   + + +  D++ +DT+G
Sbjct: 131 LVCADTFRAGAFEQIKQNAMKIKVPFYGSE-EADPVVVALEGVSRFKKEDFDLICVDTSG 189

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R      L   +  +I  +       P +++ V+DA  GQ+A  Q   F        +I+
Sbjct: 190 RHTQEKDLFTEMTDIINAV------TPDNIIFVMDAGIGQSAEDQALGFKNAVNVGSIII 243

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +K+DGT + GG I  V + + P+ F+G GE + D E F  K F   + G  D
Sbjct: 244 SKIDGTVKAGGAISSVASIQCPILFVGTGENMEDFEVFEPKGFVGRMLGMGD 295


>gi|268564306|ref|XP_002647138.1| Hypothetical protein CBG16436 [Caenorhabditis briggsae]
          Length = 496

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 145/300 (48%), Gaps = 29/300 (9%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---------VEELL----TKRY 75
           K G   +I+   LD  ++E +   LI SD+ + + +++          EE++     +RY
Sbjct: 16  KLGQNTVINEEELDLMLKE-VCTALIESDVHIRLVKQLKDNVKNAINFEEIVGGANKRRY 74

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +Q+ +++  EL+ K++ P   PF      R +V + VG+ G GKTT   K++   
Sbjct: 75  -----IQKTVFN--ELL-KLVDPGVTPFTPTKGKR-NVFMFVGLQGSGKTTTCSKMAYYY 125

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++   +  +
Sbjct: 126 QRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFTKEGFE 185

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++I+DT+GR    + L     +M++V   +    P +V+ V+DA+ GQ    Q   F   
Sbjct: 186 IIIVDTSGRHKQEASLFE---EMLQVSNAV---TPDNVVFVMDASIGQACEAQARAFSQT 239

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +I+TK+D  A+GGG +  V   K PV F+G GE I+D E F  K F   + G  D
Sbjct: 240 VDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLLGMGD 299


>gi|315604551|ref|ZP_07879614.1| signal recognition particle protein [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313563|gb|EFU61617.1| signal recognition particle protein [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 527

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 131/257 (50%), Gaps = 15/257 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           LI +D+ + V ++   ++  K Y    S      Q+V+  V + + ++L   ++  N+  
Sbjct: 38  LIDADVALPVVRQFTTQVRDKAYGAARSKALNPGQQVVSIVHDELVEILGGATRELNFAE 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V ++ G+ G GKTT+ GKL K + + G  V+L A D  R  A+ QL++  +R   
Sbjct: 98  SG-PTVFMLAGLQGAGKTTLAGKLGKWLREEGKTVLLVASDLQRPNAVQQLQVVGERAGV 156

Query: 168 DFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                E G+   +   +A      A+   ++V+I+DTAGRL  +  +M       + +  
Sbjct: 157 KVWAPEPGNGVGNPVEVARSGVDFARKSGINVVIVDTAGRLGVDQEMMD------QAIAI 210

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            D  +PH ++ VLDA  GQ+A+     F    G TG++++K+DG ARGG  + +      
Sbjct: 211 RDAVSPHEIMFVLDAMVGQDAVSTSTAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGA 270

Query: 285 PVYFLGVGEGINDLEPF 301
           P+ F   GEG++D E F
Sbjct: 271 PILFASTGEGLDDFERF 287


>gi|196016017|ref|XP_002117863.1| signal recognition particle 54 [Trichoplax adhaerens]
 gi|190579532|gb|EDV19625.1| signal recognition particle 54 [Trichoplax adhaerens]
          Length = 505

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 132/269 (49%), Gaps = 14/269 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF 107
           L+ SD+ V + +++ E +      +  A  ++ +R+L   V   + K++ P  K   W  
Sbjct: 39  LLESDVNVQLVKRLRENVRAAIDFEEMAAGLNKRRILQRAVFNELCKLVDPGVKA--WQP 96

Query: 108 SH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  + +VI+ VG+ G GKTT   K++      G K  L   DTFR+ A DQLK  + +  
Sbjct: 97  TKGKNNVIMFVGLQGSGKTTTCTKMAHYYQRKGWKTCLICADTFRAGAFDQLKQNSTKAR 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             F  S    D   +A++  ++ + +  +++I+DT+GR      L         +L+  +
Sbjct: 157 IPFYGSYTEMDPVVIAHDGVEKFKKENFEIIIVDTSGRHKQEDSLFE------EMLQLSN 210

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P +++ V+DAT GQ    Q   F        +I+TK+DG A+GGG +  V   + P+
Sbjct: 211 TITPDNIIFVMDATIGQACEAQARAFKEKVDVASVIITKLDGHAKGGGSLSAVAATRSPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G GE I D E F  + F + + G  D
Sbjct: 271 IFIGTGEHIEDFEQFKTRPFISKLLGMGD 299


>gi|169630318|ref|YP_001703967.1| Signal recognition particle protein Ffh [Mycobacterium abscessus
           ATCC 19977]
 gi|169242285|emb|CAM63313.1| Signal recognition particle protein Ffh [Mycobacterium abscessus]
          Length = 523

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 152/316 (48%), Gaps = 28/316 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L + +  +    RL D         +   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTDALAGLRGKGRLSDADIDATCRTIRLALLEADVALPVVRTFITRIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P V+++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELIGILGGETRQLAFAKTP-PTVVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS---------EIGS---DAA 179
           +K +   G   +L A D  R  A++QL++  +R                 E+GS   D  
Sbjct: 121 AKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAPHPGTADGGLEVGSLVGDPV 180

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A +    A+A+  DV+++DTAGRL  ++ LM    +  R+   +DP     VL VLDA
Sbjct: 181 AVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMD---QAARIRDAVDPD---EVLFVLDA 234

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             GQ+A+   E F    G TG+++TK+DG ARGG  + +      P+ F   GE + D +
Sbjct: 235 MIGQDAVSTAEAFREGVGFTGVVLTKLDGDARGGAALSVREITGTPILFASTGEKLEDFD 294

Query: 300 PFVAKDFSAVITGCLD 315
            F     ++ I G  D
Sbjct: 295 VFHPDRMASRILGMGD 310


>gi|241664229|ref|YP_002982589.1| signal recognition particle protein [Ralstonia pickettii 12D]
 gi|240866256|gb|ACS63917.1| signal recognition particle protein [Ralstonia pickettii 12D]
          Length = 471

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +   K V+  + D +R AAI QLK  +++  ADF
Sbjct: 114 PAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 173

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+       +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK      
Sbjct: 174 FPSQPDQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHARLK------ 227

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+
Sbjct: 228 PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGAALSVRHITGKPIKFV 287

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LEPF     +  I G  D
Sbjct: 288 GVAEKLDGLEPFYPDRMAQRILGMGD 313


>gi|37362777|gb|AAQ91346.1| signal recognition particle [Lactobacillus casei]
          Length = 221

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 107/203 (52%), Gaps = 8/203 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I++VG+ G GKTT +GKL+   M +   + +L AGD +R AAI+QLK    +     V S
Sbjct: 1   IMMVGLQGTGKTTTVGKLANYLMKNEKARPLLIAGDIYRPAAIEQLKQIGQQLDVP-VYS 59

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E   D A +     ++A   K D ++IDTAGRL  +  LM  + ++  V        P +
Sbjct: 60  EDNQDVAEIVKHGLEEADKNKNDYVLIDTAGRLEIDEQLMDELKRVTEVAH------PDN 113

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L V+DA TGQ A +  E F+     TG+++TK+DG  RGG  + I     +P+ F G G
Sbjct: 114 TLLVVDAMTGQAATQVAEGFNNDLDLTGIVLTKLDGDTRGGAALSIRAVTGLPIIFTGQG 173

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E + DL  F     ++ I G  D
Sbjct: 174 EKLTDLSTFHPDRMASRILGMGD 196


>gi|226293236|gb|EEH48656.1| signal recognition particle protein [Paracoccidioides brasiliensis
           Pb18]
          Length = 651

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 138/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIG----VAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK-- 101
           +E+ L++ ++     V + + +V EL+ K+ A   S+   L    E  + K+L P S   
Sbjct: 362 MEEHLLKKNVAREAAVRLCEGVVHELVGKKTASFQSIDSALRSAMESSLRKILTPTSSLD 421

Query: 102 ----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     P +     RP+VI +VGVNGVGK+T + K+   +     +V++ A DTFR
Sbjct: 422 LLREIEAVTSPSSSQRQRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLITACDTFR 481

Query: 152 SAAIDQLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           S A++QL++ A R   +    E            G DAA +A +A   A A   DV++ID
Sbjct: 482 SGAVEQLRVHA-RNLQELSSRENVGHVGLYQKGYGKDAANVAKDAVAYATANSFDVVLID 540

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH----AVA 256
           TAGR HN+  LM+ + K  +  +      P  +  V +A  G +++ Q   F+    A  
Sbjct: 541 TAGRRHNDQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGAGR 594

Query: 257 GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
           G  G I++K D      G L+ +V    IP+ FLG+G+   DL
Sbjct: 595 GLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGIGQHYGDL 637


>gi|309783054|ref|ZP_07677773.1| signal recognition particle protein [Ralstonia sp. 5_7_47FAA]
 gi|308918162|gb|EFP63840.1| signal recognition particle protein [Ralstonia sp. 5_7_47FAA]
          Length = 471

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +   K V+  + D +R AAI QLK  +++  ADF
Sbjct: 114 PAIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 173

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+       +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK      
Sbjct: 174 FPSQPDQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHAKLK------ 227

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+
Sbjct: 228 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGKPIKFV 287

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LEPF     +  I G  D
Sbjct: 288 GVAEKLDGLEPFYPDRMAQRILGMGD 313


>gi|290580502|ref|YP_003484894.1| signal recognition particle protein subunit [Streptococcus mutans
           NN2025]
 gi|254997401|dbj|BAH88002.1| signal recognition particle protein subunit [Streptococcus mutans
           NN2025]
          Length = 516

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L+    ++   R+L +     V +E+   L+ +D+ + V ++ ++ +  +   
Sbjct: 3   FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+++  V+E +  +L   +       S  P +I++VG+ G GKTT  GKL
Sbjct: 63  HEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIMMVGLQGAGKTTFAGKL 121

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQ 188
           + K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  +   Q
Sbjct: 122 ANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVEIVSQGLAQ 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+  + D ++IDTAGRL  +  LM  +    R +K L    P+ +L V+D+  GQ A   
Sbjct: 180 AKENRNDYVLIDTAGRLQIDEKLMTEL----RDIKAL--ANPNEILLVVDSMIGQEAANV 233

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+
Sbjct: 234 AREFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSS 293

Query: 309 VITGCLD 315
            I G  D
Sbjct: 294 RILGMGD 300


>gi|253999931|ref|YP_003051994.1| signal recognition particle protein [Methylovorus sp. SIP3-4]
 gi|253986610|gb|ACT51467.1| signal recognition particle protein [Methylovorus sp. SIP3-4]
          Length = 450

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 142/285 (49%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIH 93
           +S   + D +RE +   L+ +D+ + V ++ + ++  +   +DV +Q +     V +++H
Sbjct: 22  LSEENISDAMRE-VRMALLEADVALPVVKEFIAQVKERAVGRDV-LQSLTPGQAVIQVVH 79

Query: 94  KMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           + L  L    N   +     P +IL+ G+ G GKTT   KL++ + +   KV+LA+ D +
Sbjct: 80  EELTRLMGEQNVGLNLAAVPPAIILMAGLQGSGKTTTSAKLARLLKEQKKKVLLASADVY 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI+QLK  A     D   S        +A      A+    DV+I DTAGRL  +  
Sbjct: 140 RPAAIEQLKTLAKSLDVDCFDSNATQKPQDIAANVLDFAKRHFYDVVIFDTAGRLGIDEA 199

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M  I ++  +L       P   L V+DA  GQ+A+     F      TG+I+TK+DG A
Sbjct: 200 MMGEIQQLHALLN------PVETLFVVDAMQGQDAVNTARAFGETLPLTGVILTKLDGDA 253

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + +      P+ F+GV E ++ LE F  +  ++ + G  D
Sbjct: 254 RGGAALSVRHITGKPIKFVGVSEKVDGLEVFHPERMASRVLGMGD 298


>gi|118474225|ref|YP_892203.1| signal recognition particle protein [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261885666|ref|ZP_06009705.1| signal recognition particle protein [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118413451|gb|ABK81871.1| signal recognition particle protein [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 448

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 6/195 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S+ P V+L+ G+ G GKTT   KL+  +     KV++AA D  R AA++QL+        
Sbjct: 95  SNPPTVVLMAGLQGGGKTTTTVKLANYLKVRKKKVLIAACDLQRLAAVEQLRQLCTANEL 154

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           +    E  +D   +A  A ++A+ +  DVL++DTAGRL  +  LM+ I  +   +     
Sbjct: 155 ELFYMENENDPIKVAKNALQKAKNELYDVLLVDTAGRLAIDETLMSQIKDIKSTIN---- 210

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             PH +  V DA +GQ+ ++    F+   G TG+I++K D   +GG  I I     IP+ 
Sbjct: 211 --PHEIFYVADAMSGQDGVKTAASFNEALGITGVILSKFDADTKGGVAIGIAKQINIPLR 268

Query: 288 FLGVGEGINDLEPFV 302
           F+GVGE   DLE F+
Sbjct: 269 FVGVGEKPADLESFI 283


>gi|319892235|ref|YP_004149110.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161931|gb|ADV05474.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 455

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  M      K +L AGD +R AAI+QL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAINQLQTVGKQIDIPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +   A + A+A+ +D +IIDTAGRLH +  LM  + ++  + K      
Sbjct: 161 YSEGDQVPPQQIVQNALQHAKAEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ V+DA TGQ+A+   E F      TG+ +TK+DG  RGG  + I    + P+ F+
Sbjct: 215 PDEIMLVVDAMTGQDAVNVAESFDQQLDVTGVTLTKLDGDTRGGAALSIRAVTEKPIKFV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+ E ++ LE F  +  ++ I G  D
Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300


>gi|300741688|ref|ZP_07071709.1| signal recognition particle protein [Rothia dentocariosa M567]
 gi|300380873|gb|EFJ77435.1| signal recognition particle protein [Rothia dentocariosa M567]
          Length = 528

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 150/316 (47%), Gaps = 28/316 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V +K    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLSEADIDATVREIRRALLDADVAVPVVRKFAAHIKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++  N   +  P +I++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPSQQIVKIVNEELITILGGQTRRINMAKTG-PTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------SDAAALA 182
           +K +   G   +L A D  R  A+ QLK+  +R          G          D   +A
Sbjct: 121 AKWLKGQGHTPILVASDLQRPNAVTQLKVVGERAGVPVFAPHPGVTSEFDTPTGDPVQVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +   +A+AK  DV+I+DTAGRL  ++ LM    +  R ++  D   P  VL V+DA  G
Sbjct: 181 RDGVAEARAKLHDVVIVDTAGRLGVDAELM----QQARNIR--DAIEPQEVLFVIDAMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+     F+     TG++++K+DG ARGG  + +      P+ F   GE ++D E F 
Sbjct: 235 QDAVNTANAFNEGVDFTGVVLSKLDGDARGGAALSVASVTGKPIMFASTGENVDDFEQFH 294

Query: 303 AKDFSAVITGCLDYGE 318
               ++ I   LD G+
Sbjct: 295 PDRMASRI---LDMGD 307


>gi|298386283|ref|ZP_06995839.1| signal recognition particle protein [Bacteroides sp. 1_1_14]
 gi|298260660|gb|EFI03528.1| signal recognition particle protein [Bacteroides sp. 1_1_14]
          Length = 440

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 138/265 (52%), Gaps = 13/265 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNYKVAKTFTDTVKEKAIGQNVLTAVKPSQLMVKIVHDELTQL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
              +    +   RP VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AAI+
Sbjct: 86  MGGETVEINLESRPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL++ A++            +   +A  A ++A+AK  D++I+DTAGRL  +  +M  I 
Sbjct: 146 QLRVLAEQIEVPMYSELDSKNPVEIAQHAIQEAKAKGYDLVIVDTAGRLAVDEQMMNEIT 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +   +       P  +L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 206 AIKEAIN------PDEILFVVDSMTGQDAVNTAKEFNVRLDFNGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I      P+ F+G GE ++ ++ F
Sbjct: 260 SIRSVVNKPIKFVGTGEKLDAIDQF 284


>gi|221059453|ref|XP_002260372.1| signal recognition particle [Plasmodium knowlesi strain H]
 gi|193810445|emb|CAQ41639.1| signal recognition particle, putative [Plasmodium knowlesi strain
           H]
          Length = 500

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 19/284 (6%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVL--YDVSEL 91
           D  + E L+++   LI +DI ++  + I   +  K+  K++ +     +R++  Y V EL
Sbjct: 25  DSAIEECLKEVIRALILADINISYLKDIKSNI-KKKIEKNIDLYGNNKKRLVQQYVVEEL 83

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           I+  L+   K          +VIL VG+ G GKTT   K +      G K  L   DTFR
Sbjct: 84  IN--LLEGKKESYVPKKGSRNVILFVGLQGSGKTTTCTKFAHYYQKKGFKTALVCADTFR 141

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           + A DQLK  A +    F  S    D   +A +       +K D++I+D++GR    S L
Sbjct: 142 AGAFDQLKQNAAKVKIPFYGSYSEVDPVKIASDGVNAFLKEKYDLIIVDSSGRHKQESEL 201

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
                +M +V   ++P     ++ V+D+  GQ+   Q   F        +I+TK+DG A+
Sbjct: 202 FE---EMKQVESSINPE---EIVFVIDSHIGQSCHDQAMAFKNSVTLGSIIITKIDGHAK 255

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GGG +  V +   P+ F+G GE IND E F AK F + + G  D
Sbjct: 256 GGGALSAVASTGCPITFIGTGEHINDFEKFEAKSFVSRLLGLGD 299


>gi|322373056|ref|ZP_08047592.1| signal recognition particle protein [Streptococcus sp. C150]
 gi|321278098|gb|EFX55167.1| signal recognition particle protein [Streptococcus sp. C150]
          Length = 520

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 105/206 (50%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + M+ A D +R AAIDQLK    + +   
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEQEARPMMIAADIYRPAAIDQLKTLGQQINVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 + A  +     +QA+A K D ++IDTAGRL  +  LM  +  +           
Sbjct: 161 FDMGTETPAVEIVKNGLEQARANKNDYVLIDTAGRLQIDETLMQELHDIKNFAH------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ +L V+D+  GQ A    + F+     TG+++TK+DG  RGG  + I      P+ F 
Sbjct: 215 PNEILLVVDSMIGQEAANVAKEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I D+E F     S+ I G  D
Sbjct: 275 GTGEKITDIETFHPDRMSSRILGMGD 300


>gi|281492192|ref|YP_003354172.1| signal recognition particle subunit Ffh [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375863|gb|ADA65357.1| Signal recognition particle, subunit Ffh [Lactococcus lactis subsp.
           lactis KF147]
          Length = 518

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+KK+  +   + ++ A D +R AAIDQLK   ++     
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLAKKLKEEQNARPLMIAADVYRPAAIDQLKTLGEQLEIPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +      +AQ ++ D ++IDTAGRL  +  LM  + + I+ L       
Sbjct: 161 YDEGTAEKPVNIVRNGLLKAQEERKDYVLIDTAGRLEIDDTLMNEL-QEIKTLAE----- 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +L V+DA TGQ A +  + F      TG+I+TK+DG  RGG  + I      P+ F 
Sbjct: 215 PTEILLVVDAMTGQVAAQVAKTFDEKLDITGVIITKLDGDTRGGAALSIREITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE + DLE F     S+ I G  D
Sbjct: 275 GTGEKLTDLEVFYPDRMSSRILGMGD 300


>gi|326803882|ref|YP_004321700.1| signal recognition particle protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650579|gb|AEA00762.1| signal recognition particle protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 491

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 149/307 (48%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+  +  +    ++ +G +RE + ++   L+ +D+   V +  V ++  K   
Sbjct: 3   FESLSDRLQGAVEKVGKKGKISEGDLREMMREVRLALLEADVNFKVVKNFVRKVQDKALN 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+++  V E + ++L       N++ +  P +I++ G+ G GKTT +GKL
Sbjct: 63  SDVLESLSPTQQIVKIVDEELTELLGGEQVGINYNEAG-PTIIMMAGLQGAGKTTTVGKL 121

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQ 188
           +  + +    K +L A D +R AAIDQL+    +   D    ++G+  +   +A +A   
Sbjct: 122 ANHLREEDHRKPLLVAADVYRPAAIDQLETIGRQL--DLPVFQLGNQVSPVDIAQKAVAY 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    D + IDTAGRL  +  LM  +  +   +       P  +L  +DA +GQ A   
Sbjct: 180 AKENNYDTIFIDTAGRLQIDQTLMDELKNIQAAVH------PDEILLTVDAMSGQEAANV 233

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+++TK+DG  RGG  + I      P+ F GVGE + D+E F     S 
Sbjct: 234 AKTFDEELELTGVVLTKLDGDTRGGAALSIASITGKPIKFTGVGEKLEDIETFYPDRMSN 293

Query: 309 VITGCLD 315
            I G  D
Sbjct: 294 RILGMGD 300


>gi|323464668|gb|ADX76821.1| signal recognition particle protein [Staphylococcus
           pseudintermedius ED99]
          Length = 455

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  M      K +L AGD +R AAI+QL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAINQLQTVGKQIDIPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +   A + A+A+ +D +IIDTAGRLH +  LM  + ++  + K      
Sbjct: 161 YSEGDQVPPQQIVQNALQHAKAEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ V+DA TGQ+A+   E F      TG+ +TK+DG  RGG  + I    + P+ F+
Sbjct: 215 PDEIMLVVDAMTGQDAVNVAESFDQQLDVTGVTLTKLDGDTRGGAALSIRAVTEKPIKFV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+ E ++ LE F  +  ++ I G  D
Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300


>gi|312137225|ref|YP_004004562.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Methanothermus fervidus DSM 2088]
 gi|311224944|gb|ADP77800.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanothermus fervidus DSM 2088]
          Length = 449

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 20/280 (7%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKD------VSVQRVLYDVSELIHKM 95
           V+E ++DL   LI++D+ V +  K+ + +  KR  K+         + V+  V E + K+
Sbjct: 33  VKEVIKDLQRALIQADVNVKLVFKLSKSI-EKRALKEEPPKGITPKEHVIKIVYEELTKL 91

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L    K +      +P+ IL VG+ G GKTT + KL+  +   G    +   DT+R+AA 
Sbjct: 92  LG--KKSYKLKIDKKPYKILFVGLQGSGKTTTVAKLAHYLRLKGYNSAVVCTDTWRTAAY 149

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           DQLK   +  +          +   LA E   +   K  DV++ DTAGR  N   L+   
Sbjct: 150 DQLKQLTEEINVPMYGDPNEDNPIRLAKEGLNKF--KNYDVILFDTAGRHKNEKELL--- 204

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +M  + K ++P     ++ V+D T GQ A  Q + F        +I+TK+DG+A+GGG 
Sbjct: 205 DEMEMLSKEINPD---EIILVIDGTIGQQAKSQAKAFSERVKIGSIIVTKLDGSAKGGGA 261

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +  V     P+ F+G GE I+DLE F    F + + G  D
Sbjct: 262 LSAVSEVGAPIKFIGTGEKIDDLEEFDPARFMSRLLGMGD 301


>gi|226356240|ref|YP_002785980.1| signal recognition particle protein [Deinococcus deserti VCD115]
 gi|226318230|gb|ACO46226.1| putative Signal recognition particle protein (Fifty-four protein)
           [Deinococcus deserti VCD115]
          Length = 446

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 129/276 (46%), Gaps = 19/276 (6%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIHKMLMPL 99
           E+   L+ +D+   VA+  V  +  K   ++V        +V ++++D  ELI  +    
Sbjct: 33  EIRMALLEADVNFGVAKDFVARVSEKAVGQEVLGSLNAGQTVVKLVHD--ELIETLGGKA 90

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           ++P   +     +V  +VG+ G GKTT  GKL+      G +V+L A DT R AA DQL+
Sbjct: 91  AQP---ELKSEGNVWFMVGLQGAGKTTSTGKLAAHYKSKGRRVLLVAADTQRPAARDQLE 147

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           + A +     +    G           +  +    D++I+DTAGRL  +  LM  +  + 
Sbjct: 148 VLAKQVGVPVLKVNDGETPQETRRRLDEHLKTDFRDLVIVDTAGRLQIDEALMDQLANLQ 207

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
             L+      P   L V+DA TGQ AL   + F      +GL++TKMDG ARGG  +   
Sbjct: 208 SELQ------PTETLLVVDAMTGQEALNVAQTFDQRVNLSGLVVTKMDGDARGGASLSAR 261

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                P+YF G  E +  LEPF     +  I G  D
Sbjct: 262 SVTGKPIYFAGTSEKLTGLEPFYPDRVAGRILGMGD 297


>gi|187925412|ref|YP_001897054.1| signal recognition particle protein [Burkholderia phytofirmans
           PsJN]
 gi|187716606|gb|ACD17830.1| signal recognition particle protein [Burkholderia phytofirmans
           PsJN]
          Length = 455

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK   ++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             SE       +A  A   A+    DVL++DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSEPDQKPVDIARAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEITALHNTLK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFYPDRMANRILGMGD 303


>gi|300780916|ref|ZP_07090770.1| signal recognition particle protein [Corynebacterium genitalium
           ATCC 33030]
 gi|300532623|gb|EFK53684.1| signal recognition particle protein [Corynebacterium genitalium
           ATCC 33030]
          Length = 580

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 137/283 (48%), Gaps = 26/283 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  ++ +  +    DVS      Q+V+  V E +  +L   ++  N   
Sbjct: 38  LLEADVSLTVVRAFIKRVKERALGADVSEALNPAQQVIKIVDEELTNILGGETRRLNL-A 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
            + P VI++ G+ G GKTT+ GKL+  +   G   ML A D  R  A+ QL+I  +R   
Sbjct: 97  KNPPTVIMLAGLQGAGKTTLAGKLALHLKKQGHAPMLVACDLQRPGAVQQLQIVGERAGV 156

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   TS D    E+G+   D  ++A  +  +A+    DV+IIDTAGRL  +  LM 
Sbjct: 157 RTFAPDPGTSLDSAEHEMGTSHGDPVSVAQASIDEARRTNADVVIIDTAGRLGIDETLMT 216

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              + IR     +   P  VL V+DA  GQ+A+   + F      TG+++TK+DG ARGG
Sbjct: 217 Q-ARNIR-----NAVNPDEVLFVIDAMIGQDAVTTAQAFADGVDFTGVVLTKLDGDARGG 270

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
             + I      P+ F   GE + D + F     S+ I G  D 
Sbjct: 271 AALSIREVTGKPILFASTGEKLEDFDVFHPDRMSSRILGMGDL 313


>gi|240146499|ref|ZP_04745100.1| signal recognition particle protein [Roseburia intestinalis L1-82]
 gi|257201355|gb|EEU99639.1| signal recognition particle protein [Roseburia intestinalis L1-82]
          Length = 448

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 159/304 (52%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++ S  RL +D V+  L+++   L+ +D+   V ++ V+++  +   
Sbjct: 3   FDSLSEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKQFVKDVQERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + +++   +            +I++ G+ G GKTT   K+
Sbjct: 63  QDVMNGLNPGQMVIKIVNEEMVRLMGSETTEIALRPGKELTIIMMAGLQGAGKTTTTAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G KV+LAA D +R AAI+QL+I  ++   +       +    +A  A + A  
Sbjct: 123 AGKLKAKGKKVLLAACDVYRPAAIEQLQINGEKQGVEVFSMGDKNTPVNIAKAAVEHATK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +VLIIDTAGRLH +  +MA   ++I++ + +   A    + V+DA TGQ+A+   + 
Sbjct: 183 NDFNVLIIDTAGRLHVDEDMMA---ELIQIKENV---AVSQTILVVDAMTGQDAVNVAKT 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+++TK+DG  RGG  + I      P+ + G+GE ++DLE F     ++ I 
Sbjct: 237 FDEKIGIDGVVLTKLDGDTRGGAALSIRAVTGKPILYAGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|296268962|ref|YP_003651594.1| signal recognition particle protein [Thermobispora bispora DSM
           43833]
 gi|296091749|gb|ADG87701.1| signal recognition particle protein [Thermobispora bispora DSM
           43833]
          Length = 508

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 24/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L    + + S  RL     D    E+   L+ +D+ + V +  +  +  K  A
Sbjct: 2   FETLSDRLTSVFSSLRSRGRLSEADIDATCREIRIALLEADVALPVVKAFIARV--KERA 59

Query: 77  KDVSVQRVL---YDVSELIHKMLMPL--SKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130
           +   V + L     V +++H  L+ +   +     F+  P  VI++ G+ G GKTT+ GK
Sbjct: 60  RGAEVSQALNPAQQVVKIVHDELIEVLGGETRRIRFAKTPPTVIMLAGLQGAGKTTLAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L+K + D G   +L A D  R  A+ QL + A+R        E G+   D  A+A ++  
Sbjct: 120 LAKWLRDQGHAPLLVACDLQRPNAVQQLTVLAERAGVAIFAPEPGNGVGDPVAVARQSID 179

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K+ DV+I+DTAGRL  +  +M     +       D   P  VL VLDA  GQ+A+ 
Sbjct: 180 HAKRKQYDVVIVDTAGRLGIDEEMMRQAADI------RDAINPDEVLFVLDAMIGQDAVN 233

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F    G  G+++TK+DG ARGG  + +      P+ F   GE + D + F     +
Sbjct: 234 TARAFMEGVGFDGVVLTKLDGDARGGAALSVRQITGRPIMFASTGEKLEDFDVFHPDRMA 293

Query: 308 AVITGCLDYGE 318
           + I   LD G+
Sbjct: 294 SRI---LDMGD 301


>gi|312862888|ref|ZP_07723128.1| signal recognition particle protein [Streptococcus vestibularis
           F0396]
 gi|322516902|ref|ZP_08069799.1| signal recognition particle protein [Streptococcus vestibularis
           ATCC 49124]
 gi|311101748|gb|EFQ59951.1| signal recognition particle protein [Streptococcus vestibularis
           F0396]
 gi|322124525|gb|EFX96007.1| signal recognition particle protein [Streptococcus vestibularis
           ATCC 49124]
          Length = 520

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + M+   D +R AAIDQLK    + +   
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEQEARPMMIGADIYRPAAIDQLKTLGQQINVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 + A  +     +QA+A K D ++IDTAGRL  +  LM    + +R +K      
Sbjct: 161 FDMGTETPAVEIVRNGLEQARANKNDYVLIDTAGRLQIDETLM----QELRDIKGF--AH 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ +L V+D+  GQ A    + F+     TG+++TK+DG  RGG  + I      P+ F 
Sbjct: 215 PNEILLVVDSMIGQEAANVAKEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I D+E F     S+ I G  D
Sbjct: 275 GTGEKITDIETFHPDRMSSRILGMGD 300


>gi|225868530|ref|YP_002744478.1| signal recognition particle protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701806|emb|CAW99232.1| signal recognition particle protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 523

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 150/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L++    I   + L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTQRLQDVFKHIRGKKTLSEADVQEVTKEIRLALLEADVALPVVKTFIKRIRERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q++L  V+E +  +L   S+    D S + P VI++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQILKIVNEELTGILG--SETAELDKSPKIPTVIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +      QA
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTNHSAVDIVANGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM+ + + ++ L +     P+ +L V+D+  GQ A    
Sbjct: 181 KENRHDYVLIDTAGRLQIDEKLMSEL-REVKALAK-----PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 YEFNNQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|300777801|ref|ZP_07087659.1| signal recognition particle protein [Chryseobacterium gleum ATCC
           35910]
 gi|300503311|gb|EFK34451.1| signal recognition particle protein [Chryseobacterium gleum ATCC
           35910]
          Length = 453

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 137/278 (49%), Gaps = 20/278 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL- 99
           +E+   L+ +D+   VA+      LTKR       Q VL  ++      +++H  L+ L 
Sbjct: 32  KEIRRALVDADVNYKVAKD-----LTKRVQDKALGQNVLTSLTPGQLMTKIVHDELVDLM 86

Query: 100 -SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQ 157
                  + S +P VIL+ G+ G GKTT  GKL+  + +    K +L A D +R AAIDQ
Sbjct: 87  GGSQEGINLSGKPTVILIAGLQGSGKTTFSGKLANYLQTKRNKKPLLVACDVYRPAAIDQ 146

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LK+   +        E  ++ + +A  A   A++   DV+I+DTAGRL  +  +M  I  
Sbjct: 147 LKVLGGQIKVPVYTEEGSTNPSTIAENAINFAKSNGHDVVIVDTAGRLAIDEQMMNEIKS 206

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +   +K      P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + 
Sbjct: 207 VHYFIK------PQETLFVVDSMTGQDAVNTAKAFNDALNFDGVVLTKLDGDTRGGAALT 260

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I    + P+ F+  GE +  L+ F  +  +  I G  D
Sbjct: 261 IRSVVEKPIKFISTGEKMEALDLFYPERMADRILGMGD 298


>gi|289581472|ref|YP_003479938.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Natrialba magadii ATCC 43099]
 gi|289531025|gb|ADD05376.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Natrialba magadii ATCC 43099]
          Length = 464

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 104/207 (50%), Gaps = 8/207 (3%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
             IL+ G+ G GKTT   K++   S  GL+  +   DTFR  A DQ K  A R   DF  
Sbjct: 98  QTILLAGLQGSGKTTSSAKMAWWFSTKGLRPAIIQTDTFRPGAYDQAKEMAGRAEVDFYG 157

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +    D   +A +  +     + DV I+DTAGR      L+A I ++  V++      P 
Sbjct: 158 NPDNDDPVEIARKGLEAT--SEADVHIVDTAGRHALEDDLIAEIEQIEGVVE------PD 209

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
           + L VLDA  GQ A  Q + F    G  G+++TK+DGTA+GGG +  V      + FLG 
Sbjct: 210 TSLLVLDAAIGQGAKEQAQQFDESIGIDGVVITKLDGTAKGGGALTAVDQTDSSIAFLGT 269

Query: 292 GEGINDLEPFVAKDFSAVITGCLDYGE 318
           GE + D+E F    F + + G  D G+
Sbjct: 270 GEEVQDVERFEPDSFISRLLGMGDLGQ 296


>gi|23464904|ref|NP_695507.1| signal recognition particle protein [Bifidobacterium longum
           NCC2705]
 gi|23325496|gb|AAN24143.1| signal recognition particle protein [Bifidobacterium longum
           NCC2705]
          Length = 582

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 36/324 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +    ++  +   
Sbjct: 36  FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALG 95

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 96  TEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 154

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D+G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 155 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQT 214

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A ++ + A+ K  D +IIDTAGRL  +  LM    K  R ++  D   P+ +L
Sbjct: 215 SGDPVKVARDSIELAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DAVRPNEIL 268

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG
Sbjct: 269 FVIDAMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNGEG 328

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           + D E F     ++ I   LD G+
Sbjct: 329 LKDFEVFHPDRMASRI---LDMGD 349


>gi|118579532|ref|YP_900782.1| signal recognition particle protein [Pelobacter propionicus DSM
           2379]
 gi|118502242|gb|ABK98724.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pelobacter
           propionicus DSM 2379]
          Length = 453

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 141/284 (49%), Gaps = 18/284 (6%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS-ELI 92
           +D ++E L ++   L+ +D+   V +  VE +  K    +V       Q+V+  V+ EL+
Sbjct: 24  EDNIKEALREVRLALLEADVNFKVVKDFVESVRAKAVGTEVLQSLSPGQQVVKIVNDELV 83

Query: 93  HKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
              +M   +  + + + +P V +++VG+ G GKTT  GKL+  +     + +L   D +R
Sbjct: 84  A--IMGGHEDNSINLAAKPPVSLMMVGLQGAGKTTTCGKLALHLRGRKRRPLLVPADVYR 141

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            AAIDQLKI   +       S        +   A K A+    D +I+DTAGR   +  L
Sbjct: 142 PAAIDQLKIVGKQLGVAVFDSSADQKPVDICSAAMKFAELNGFDTVILDTAGRHQIDDFL 201

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + ++   ++      P  +L V DA TGQ A+     F+   G TG+I+TKMDG A+
Sbjct: 202 MGELAEINETIR------PAEILFVADAMTGQEAVNVAAGFNDRLGITGVILTKMDGDAK 255

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG  + I      PV F+G+GE ++ LE F A    + I G  D
Sbjct: 256 GGAALSIKAVTGKPVKFVGMGEKLDALEVFHADRLVSRILGMGD 299


>gi|295677731|ref|YP_003606255.1| signal recognition particle protein [Burkholderia sp. CCGE1002]
 gi|295437574|gb|ADG16744.1| signal recognition particle protein [Burkholderia sp. CCGE1002]
          Length = 455

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK   ++  ADF
Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             SE       +A  A   A+    DVL++DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSEPNQKPVDIARAAVDWAKRHYHDVLLVDTAGRLGIDEAMMNEIAALHAELK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      PV F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPVKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     ++ I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMASRILGMGD 303


>gi|58696771|ref|ZP_00372307.1| signal recognition particle protein [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58537035|gb|EAL60173.1| signal recognition particle protein [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 417

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 137/259 (52%), Gaps = 12/259 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVS-VQRVLYDVSELIHKMLMPLSKP 102
           E+   LI +D+ + VA+K + ++  K    +  K VS  Q ++  V + +  +L      
Sbjct: 3   EIRIALIEADVSLEVAKKFINDIKDKVIGEKVIKSVSPAQMIIKIVQDNLVAVLGSEKSD 62

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            N      P VI++VG+ G GKTT  GKL+ K+     KVMLA+ D +R AA  QL++  
Sbjct: 63  LNLAVKP-PAVIMMVGLQGAGKTTTSGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLG 121

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +     +   I      +   A   A+    DVLI+DTAGRLH ++ +M      ++ +
Sbjct: 122 KQIDVQTLPVVIDEKPITITKRALAAAKNDNYDVLILDTAGRLHIDNNMM----NELKAV 177

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           K +   +P  V+ V DA  GQ+A+   + F+ V G TG+I+T++DG ARGG  + + +  
Sbjct: 178 KEI--ASPAEVILVADAMIGQDAVNIAKSFNEVIGVTGIILTRVDGDARGGAALSMKMIA 235

Query: 283 KIPVYFLGVGEGINDLEPF 301
             P+ F+  GE ++DL+ F
Sbjct: 236 DCPIKFIACGEKLSDLDDF 254


>gi|319791708|ref|YP_004153348.1| signal recognition particle protein [Variovorax paradoxus EPS]
 gi|315594171|gb|ADU35237.1| signal recognition particle protein [Variovorax paradoxus EPS]
          Length = 462

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 108/209 (51%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QLK    +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S        +A  A   A+    DVL++DTAGRL  + +LM  I ++   L    
Sbjct: 157 AEWFPSTPDQKPLDIARAALDHAKRHYFDVLLVDTAGRLAIDEVLMTEIKQLHAALD--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+I+TK DG +RGG  + +     +P+
Sbjct: 214 ---PVETLFVVDAMQGQDAINTAKAFKEALPLTGIILTKTDGDSRGGAALSVRQVTGVPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G  E I+ LE F A+  +  I G  D
Sbjct: 271 KFAGTSEKIDGLEVFDAERHAGRILGMGD 299


>gi|51473373|ref|YP_067130.1| signal recognition particle protein [Rickettsia typhi str.
           Wilmington]
 gi|81826334|sp|Q68XJ4|SRP54_RICTY RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|51459685|gb|AAU03648.1| signal recognition particle protein [Rickettsia typhi str.
           Wilmington]
          Length = 449

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 151/290 (52%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89
           I++  ++D  +R+ +   L+ SD+ + V +  + E+  K   ++V  SV   Q ++  + 
Sbjct: 21  ILTENQIDTAMRD-VRVALLESDVALPVIKGFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P V +L+VG+ G GKTT  GKL+  + +   KV+L + D
Sbjct: 80  EEMINLLASSESTTKLNLNSKPPVNLLMVGLQGGGKTTASGKLALLLKNQNKKVLLVSLD 139

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL I A+  + D +    G     +   A  +A+    DV+I DTAGR+  +
Sbjct: 140 TYRPAAQEQLAIIANSVNIDSLPIVQGEQPLDIVKRAISEAKIFAYDVVIYDTAGRIQID 199

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           +++M     + ++L       P   L V+D+ TGQ+A+     F      +GLI++++DG
Sbjct: 200 NVMMEEALAIKKILN------PTETLLVIDSMTGQDAVVTARSFSDKLEISGLILSRIDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
             +GG  + +    + P+ FL  GE + DLE F A+  ++ I   LD G+
Sbjct: 254 DTKGGAALSVKYLTQKPIKFLSCGEKLTDLEEFDAERLASRI---LDMGD 300


>gi|332877610|ref|ZP_08445354.1| signal recognition particle protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332684459|gb|EGJ57312.1| signal recognition particle protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 442

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 111/211 (52%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           + S  P VIL+ G+ G GKTT  GKL+  + +    K +L A D +R AAIDQL I  ++
Sbjct: 94  NLSGNPTVILMSGLQGSGKTTFSGKLANYLKTKKNKKPLLVACDVYRPAAIDQLHIVGEQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                   +  ++   +A +    A+   ++V+I+DTAGRL  +  +M  I  + + +K 
Sbjct: 154 VGVPVFSDKGNNNPVDIALKGLAYAKENHLNVVIVDTAGRLAVDEQMMNEISNIHQAIK- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                PH  L V+DA TGQ+A+   + F+ V    G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PHETLFVVDAMTGQDAVNTAKAFNDVLNFDGVILTKLDGDTRGGAAITIKSVVNK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE ++ ++ F     +  I G  D
Sbjct: 268 PIKFVGTGEKMDAIDVFYPDRMADRILGMGD 298


>gi|124809679|ref|XP_001348651.1| signal recognition particle SRP54, putative [Plasmodium falciparum
           3D7]
 gi|23497549|gb|AAN37090.1| signal recognition particle SRP54, putative [Plasmodium falciparum
           3D7]
 gi|326787503|gb|AEA07718.1| signal recognition particle 54 [Plasmodium falciparum]
          Length = 500

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 149/311 (47%), Gaps = 16/311 (5%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++ ++  +  RKL     +  + ++E + +II +  L D     L+D  I+S+I   + +
Sbjct: 5   ELGTQITNAFRKLQTSTLADDVVIEECLKEIIRALILSDINVSYLKD--IKSNIKNNIEK 62

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            I  ++      K   VQ+  Y V ELI K+L    + +N     R +VIL VG+ G GK
Sbjct: 63  NI--DIYGNNKKK--LVQK--YVVEELI-KLLEGKKEGYNPVKGKR-NVILFVGLQGSGK 114

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT   K +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A +
Sbjct: 115 TTTCTKYAHYYQKKGFKTALVCADTFRAGAFDQLKQNAAKVKIPFYGSYSEVDPVKIATD 174

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                   K D++I+D++GR    + L     +MI+V   +    P  ++ V+D+  GQ+
Sbjct: 175 GVNAFLKDKYDLIIVDSSGRHKQENELFE---EMIQVENSI---QPEEIIFVIDSHIGQS 228

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
              Q   F        +I+TK+DG A+GGG +  V     P+ F+G GE +ND E F AK
Sbjct: 229 CHDQAMAFKNSVSLGSIIITKIDGHAKGGGALSAVAATGCPITFIGTGEHVNDFEKFEAK 288

Query: 305 DFSAVITGCLD 315
            F + + G  D
Sbjct: 289 SFVSRLLGLGD 299


>gi|291527949|emb|CBK93535.1| signal recognition particle protein [Eubacterium rectale M104/1]
          Length = 458

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 159/304 (52%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++ S  +L +D V+  L+++   L+ +D+   V ++  + +  +   
Sbjct: 3   FDSLSEKLQNVFKNLRSKGKLTEDDVKAALKEVKMALLEADVNFKVVKQFTKSVQERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +    +       VI++VG+ G GKTT   K+
Sbjct: 63  QDVMNGLNPGQMVIKIVNEEMIKLMGSETTEIAFRPGKELTVIMMVGLQGAGKTTTTAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G K +L A D +R AAI+QLKI  ++   +       +  A +A  A + A+ 
Sbjct: 123 AGKLKSKGKKSLLVACDVYRPAAIEQLKINGEKQGVEVFSMGDKNKPADIAKAAVEHAKK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +V+IIDTAGRLH +  +MA   ++I + +  D     ++L V+DA TGQ+A+     
Sbjct: 183 NDFNVVIIDTAGRLHIDEDMMA---ELIEIKEATDVF--QTIL-VVDAMTGQDAVNVAGT 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+++TK+DG  RGG  + I      P+ + G+GE ++DLE F  +  ++ I 
Sbjct: 237 FDEKIGIDGVVITKLDGDTRGGAALSIRAVTGKPILYAGMGEKLSDLEQFYPERMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|223043736|ref|ZP_03613779.1| signal recognition particle protein [Staphylococcus capitis SK14]
 gi|222442833|gb|EEE48935.1| signal recognition particle protein [Staphylococcus capitis SK14]
          Length = 455

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  M      K ML AGD +R AAIDQL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQIDIPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K      
Sbjct: 161 YSEGDQVQPQQIVENALKHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ V+DA TGQ+A+   + F      +G+ +TK+DG  RGG  + I    + P+ F+
Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDDQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+ E ++ LE F  +  ++ I G  D
Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300


>gi|125623722|ref|YP_001032205.1| signal recognition particle protein [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124492530|emb|CAL97473.1| signal recognition particle protein [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300070491|gb|ADJ59891.1| signal recognition particle protein [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 518

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+KK+  +   + ++ A D +R AAIDQLK   ++     
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLAKKLKEEQNARPLMIAADVYRPAAIDQLKTLGEQLDIPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +      +AQ ++ D ++IDTAGRL  +  LM  + + I+ L +     
Sbjct: 161 YDEGTSEKPVNIVRNGLLKAQEERKDYVLIDTAGRLEIDDTLMNEL-QEIKALAQ----- 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +L V+DA TGQ A +  + F      TG+I+TK+DG  RGG  + I      P+ F 
Sbjct: 215 PTEILLVVDAMTGQVAAQVAKTFDEKLDITGVIITKLDGDTRGGAALSIREITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE + DLE F     S+ I G  D
Sbjct: 275 GTGEKLTDLEVFYPDRMSSRILGMGD 300


>gi|325982102|ref|YP_004294504.1| signal recognition particle protein [Nitrosomonas sp. AL212]
 gi|325531621|gb|ADZ26342.1| signal recognition particle protein [Nitrosomonas sp. AL212]
          Length = 449

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+K  M +   KV+L + D +R AAI QL++ A++  ADF
Sbjct: 100 PAVILMAGLQGAGKTTSSGKLAKWLMENKKKKVLLVSCDIYRPAAIHQLELLANQVGADF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
              + G     +   A   A+    +V+I+DTAGRL  +  +M  I ++  +L+      
Sbjct: 160 FPVQEGQKPGEIGAAALDYARRHHHEVMIVDTAGRLGIDEAMMQEIRELETLLR------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F      TG+I+TK+DG ARGG  + +      P+ F 
Sbjct: 214 PIETLFVVDAMQGQDAVNTAKAFSDALPLTGVILTKLDGDARGGAALSVKHITGKPIKFA 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G  E +  LE F     ++ I G  D
Sbjct: 274 GTAEKLTGLEAFHPDRMASRILGMGD 299


>gi|84995142|ref|XP_952293.1| signal recognition particle receptor alpha subunit [Theileria
           annulata strain Ankara]
 gi|65302454|emb|CAI74561.1| signal recognition particle receptor alpha subunit, putative
           [Theileria annulata]
          Length = 547

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 109/198 (55%), Gaps = 15/198 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           + I+ +GVNGVGK+T + K++  +  +G KV++ A DTFRS A++QLK            
Sbjct: 346 YSIVFLGVNGVGKSTSLAKVAYLLKSSGFKVLVIACDTFRSGAVEQLKTHTRNLGLQLFE 405

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G D + +A E  K A A + DV++IDTAGR+ +N  LMA + K+I V      + P+
Sbjct: 406 RGYGKDPSQIAKEGLKYATANQFDVVLIDTAGRMQDNEPLMAALTKLITV------NNPN 459

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGT------TGLIMTKMDGTAR--GGGLIPIVVTHK 283
            +L V +A  G +A+ Q++ F+   G         L++TK D      G  L  + +T K
Sbjct: 460 LILFVGEALVGNDAVDQLKKFNTAIGKGTDRSIDALLLTKFDTVDDKVGAALSMVYITGK 519

Query: 284 IPVYFLGVGEGINDLEPF 301
            P+ F+G G+  +DL+P 
Sbjct: 520 -PILFVGNGQTYSDLQPL 536


>gi|269114992|ref|YP_003302755.1| signal recognition particle protein [Mycoplasma hominis]
 gi|268322617|emb|CAX37352.1| Signal recognition particle protein (fifty fourhomolog) [Mycoplasma
           hominis ATCC 23114]
          Length = 442

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 131/257 (50%), Gaps = 18/257 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +   +E+  K  +  +       Q VL    + + ++L   SK  +   
Sbjct: 38  LLEADVNLEVVKNFTKEVKAKALSSQIIGKLNQQQTVLKIFKDELTRILG--SKSIDIKT 95

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV--MLAAGDTFRSAAIDQLKIWADRT 165
           ++ P  I++VG+ G GKTT   KLS       L V  +L   D +R AA +QL+  A +T
Sbjct: 96  NNNPTKIMMVGLQGSGKTTTAAKLSVYFKKKNLAVNPLLVGDDIYRPAAREQLQQLAKQT 155

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             DF   E  ++A  +A +A + A+  K D++IIDTAGRL  +  LM       + LK +
Sbjct: 156 QTDFFTME-ENNAINIAQKAIELAKENKNDLVIIDTAGRLAIDENLM-------QELKDI 207

Query: 226 DPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
             +  P  +  V+DA +GQ+ +   ++FH      G I+TK+D  ARGG  + I     +
Sbjct: 208 KKYTHPDYIFLVVDAMSGQDVINTAKIFHQELNLDGTIITKLDSDARGGAALSITHLLNV 267

Query: 285 PVYFLGVGEGINDLEPF 301
           P+ F+G GE +  LE F
Sbjct: 268 PIIFIGTGEKLTGLELF 284


>gi|238923877|ref|YP_002937393.1| signal recognition particle protein [Eubacterium rectale ATCC
           33656]
 gi|238875552|gb|ACR75259.1| signal recognition particle protein [Eubacterium rectale ATCC
           33656]
 gi|291524523|emb|CBK90110.1| signal recognition particle protein [Eubacterium rectale DSM 17629]
          Length = 458

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 159/304 (52%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++ S  +L +D V+  L+++   L+ +D+   V ++  + +  +   
Sbjct: 3   FDSLSEKLQNVFKNLRSKGKLTEDDVKAALKEVKMALLEADVNFKVVKQFTKSVQERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +    +       VI++VG+ G GKTT   K+
Sbjct: 63  QDVMNGLNPGQMVIKIVNEEMIKLMGSETTEIAFRPGKELTVIMMVGLQGAGKTTTTAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G K +L A D +R AAI+QLKI  ++   +       +  A +A  A + A+ 
Sbjct: 123 AGKLKSKGKKSLLVACDVYRPAAIEQLKINGEKQGVEVFSMGDKNKPADIAKAAVEHAKK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +V+IIDTAGRLH +  +MA   ++I + +  D     ++L V+DA TGQ+A+     
Sbjct: 183 NDFNVVIIDTAGRLHIDEDMMA---ELIEIKEATDVF--QTIL-VVDAMTGQDAVNVAGT 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+++TK+DG  RGG  + I      P+ + G+GE ++DLE F  +  ++ I 
Sbjct: 237 FDEKIGIDGVVITKLDGDTRGGAALSIRAVTGKPILYAGMGEKLSDLEQFYPERMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|42520886|ref|NP_966801.1| signal recognition particle protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410626|gb|AAS14735.1| signal recognition particle protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 447

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 153/294 (52%), Gaps = 15/294 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----E 68
             + LT+   S   KL+     IIS    +  +RE +   LI +D+ + VA+K +    +
Sbjct: 1   MFKSLTESLNSVFSKLRG--KSIISEDDFNLAMRE-IRIALIEADVSLEVAKKFINNIKD 57

Query: 69  ELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +++ ++  K VS  Q ++  V + +  +L       N      P VI++VG+ G GKTT 
Sbjct: 58  KVIGEKVIKSVSPAQMIIKIVQDNLVAVLGSEKSDLNLAVKP-PAVIMMVGLQGAGKTTT 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+ K+     KVMLA+ D +R AA  QL++   +     +   I      +   A  
Sbjct: 117 SGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDVQTLPVVIDEKPITITKRAIA 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRLH ++ +M      ++ +K +   +P  V+ V DA  GQ+A+ 
Sbjct: 177 IAKNDNYDVLILDTAGRLHIDNNMM----NELKAVKEI--ASPAEVILVADAMIGQDAVN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             + F+ V G TG+I+T++DG ARGG  + + +    P+ F+  GE ++DL+ F
Sbjct: 231 IAKSFNEVIGVTGIILTRVDGDARGGAALSMKMIADCPIKFIACGEKLSDLDDF 284


>gi|308189776|ref|YP_003922707.1| signal recognition particle protein [Mycoplasma fermentans JER]
 gi|319776994|ref|YP_004136645.1| signal recognition particle protein [Mycoplasma fermentans M64]
 gi|307624518|gb|ADN68823.1| signal recognition particle protein [Mycoplasma fermentans JER]
 gi|318038069|gb|ADV34268.1| Signal recognition particle protein [Mycoplasma fermentans M64]
          Length = 453

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 8/211 (3%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADR 164
            + RP++I++ G+ G GKTT   KL+  +       K ++ A D +R AA+ QL   A  
Sbjct: 95  ITARPYIIMMAGLQGSGKTTACAKLAYYLRKKNFVTKPLVVAADIYRPAAVQQLVTLAKS 154

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              D+        A  +  EA K A A+K D++IIDTAGRL  +  LM  +  + ++   
Sbjct: 155 IQIDYFEKGTNVSAQDIVKEALKVADAQKNDLIIIDTAGRLSIDEPLMQELWDLKKI--- 211

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  +  V DA +GQ+ L   E F+     TG I+TK+D  ARGG  + +    K+
Sbjct: 212 ---ANPSEIFFVADALSGQDILNVAETFNNKLKLTGTIITKLDSDARGGAALSLTKMLKL 268

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +++L+ F     +  I G  D
Sbjct: 269 PIRFIGTGEKVSNLDLFYPDRMADRILGMGD 299


>gi|307105722|gb|EFN53970.1| hypothetical protein CHLNCDRAFT_31879 [Chlorella variabilis]
          Length = 490

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 137/284 (48%), Gaps = 19/284 (6%)

Query: 43  DGVREELEDLLIRSDIGV--------AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           D   +E+   L+++D+ V         V +++  E L     K   +++ ++D  EL   
Sbjct: 29  DACLKEIATALLQADVNVRLVANLRNNVKKRVNMEQLASGLNKQKVIEKAVFD--ELCS- 85

Query: 95  MLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            ++    P   +    + ++++ VG+ G GKTT   K +      G K  +   DTFR+ 
Sbjct: 86  -MLDGGDPKKTELKKGKTNIVMFVGLQGAGKTTTCTKYAFLWKKKGFKPAMVCADTFRAG 144

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A DQLK  A +    F  S   +D A +A +   + + +  D++I+DT+GR      L  
Sbjct: 145 AFDQLKQNATKAQIPFYGSYTETDPAIIAQQGVDRFKKEGRDLIIVDTSGRHKQEEALFE 204

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              +M +V   ++P     V+ V+D + GQ A  Q + FH       +I+TK+DG A+GG
Sbjct: 205 ---EMRQVAAAVNPQ---HVIFVMDGSIGQAAFDQAKAFHESVDVGQVIITKLDGHAKGG 258

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           G +  V   + P+ F+G GE +++ E F  + F   + G  D+G
Sbjct: 259 GALSAVAATRSPITFIGTGEHMHEFESFETQKFVGRLLGRGDWG 302


>gi|227545808|ref|ZP_03975857.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227213924|gb|EEI81763.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 582

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 36/324 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +    ++  +   
Sbjct: 36  FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALG 95

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 96  TEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 154

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D+G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 155 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQT 214

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A ++ + A+ K  D +IIDTAGRL  +  LM    K  R ++  D   P+ +L
Sbjct: 215 SGDPVKVARDSIELAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DAVRPNEIL 268

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG
Sbjct: 269 FVIDAMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNGEG 328

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           + D E F     ++ I   LD G+
Sbjct: 329 LKDFEVFHPDRMASRI---LDMGD 349


>gi|83319981|ref|YP_424520.1| signal recognition particle protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283867|gb|ABC01799.1| signal recognition particle protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 447

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 144/283 (50%), Gaps = 18/283 (6%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           ++ ++E L+++   L+ +D+ +   ++I+  +  K     +     + Q+++  V E + 
Sbjct: 26  EENIKETLKEIRLSLLEADVNIEATKEIISNVKQKALGGYIFEGANAHQQMIKIVHEELV 85

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRS 152
            +L   + P   + + +P V+++VG+ G GKTT   KL+  ++    K +L  G D +R 
Sbjct: 86  NILGKENAPL--ELNKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRP 143

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI+QL     +T+   V  +   D    A EA + AQ    DV+I+DTAGRL  + +LM
Sbjct: 144 GAIEQLIQLGQKTNTQ-VFEKGKQDPVLTAQEALEYAQENNFDVVILDTAGRLQVDQVLM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +  + +        +P  +L V+D  +GQ  +     F+     +G+++TK+DG ARG
Sbjct: 203 TELDNLKK------KTSPSEILLVVDGMSGQEIINVTNEFNNKLKLSGVVVTKLDGDARG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + I    K+P+ F+G GEG N L  F  K  +  + G  D
Sbjct: 257 GATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGD 299


>gi|300767270|ref|ZP_07077182.1| signal recognition particle protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180484|ref|YP_003924612.1| signal recognition particle protein [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|300495089|gb|EFK30245.1| signal recognition particle protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045975|gb|ADN98518.1| signal recognition particle protein [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 484

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 150/309 (48%), Gaps = 23/309 (7%)

Query: 20  GFASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            F   + +L++ +T++     IS   L   +RE +   L+ +D+   V +  V+ +  + 
Sbjct: 2   AFEGLTERLQKAMTNLRRKGKISESDLRATMRE-IRLALLEADVNFTVVKDFVKTVRERA 60

Query: 75  YAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               V       Q+++  V E + K +   + P N      P VI++ G+ G GKTT +G
Sbjct: 61  LGAKVLEGLNPAQQIVKIVDEELTKTMGEKAVPLNKS-PKIPTVIMMAGLQGAGKTTTVG 119

Query: 130 KLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAF 186
           KL+ K+ ++   + ++ A D +R AAI+QL+        D    ++G+D     +  +  
Sbjct: 120 KLALKLKNEQDARPLMIAADVYRPAAIEQLQQVG--RQIDVPVFQLGTDVDPVEIVRQGM 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            QAQ    D + IDTAGRL  +  LM  +  +  ++       P  +L V+DA TGQNA+
Sbjct: 178 AQAQENHNDYVFIDTAGRLQIDEQLMNELANIKDLVH------PDEILLVIDAMTGQNAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              E F+     TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     
Sbjct: 232 NTAEGFNDKLDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMTDLDVFHPDRM 291

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 292 ADRILGMGD 300


>gi|116512427|ref|YP_809643.1| signal recognition particle protein [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116108081|gb|ABJ73221.1| signal recognition particle subunit FFH/SRP54 (srp54) [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 518

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+KK+  +   + ++ A D +R AAIDQLK   ++     
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLAKKLKEEQNARPLMIAADVYRPAAIDQLKTLGEQLDIPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +      +AQ ++ D ++IDTAGRL  +  LM  + + I+ L +     
Sbjct: 161 YDEGTSEKPVNIVRNGLLKAQEERKDYVLIDTAGRLEIDDTLMNEL-QEIKALAQ----- 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +L V+DA TGQ A +  + F      TG+I+TK+DG  RGG  + I      P+ F 
Sbjct: 215 PTEILLVVDAMTGQVAAQVAKTFDEKLDITGVIITKLDGDTRGGAALSIREITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE + DLE F     S+ I G  D
Sbjct: 275 GTGEKLTDLEVFYPDRMSSRILGMGD 300


>gi|23502679|ref|NP_698806.1| signal recognition particle protein [Brucella suis 1330]
 gi|23348690|gb|AAN30721.1| signal recognition particle protein [Brucella suis 1330]
          Length = 523

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GK++K++++   K V++A+ DT R AA +QL+    +T  D 
Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM  +  + +         
Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+     F    G TG+++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
             GE ++ LE F  K  +  I G  D
Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299


>gi|329115921|ref|ZP_08244638.1| signal recognition particle protein [Streptococcus parauberis NCFD
           2020]
 gi|326906326|gb|EGE53240.1| signal recognition particle protein [Streptococcus parauberis NCFD
           2020]
          Length = 524

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 154/307 (50%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L+    +I   ++L D     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTERLQGVFKNIRGKKKLSDKDVQEVTKEIRLALLEADVALPVVKTFIKRIRERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q++L  V+E +  +L   +          P +I++VG+ G GKTT  GKL
Sbjct: 63  HEIIDTLDPTQQILKIVNEELTAILGSETSEI-VKSPKIPTIIMMVGLQGAGKTTFAGKL 121

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQ 188
           + K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  +  +Q
Sbjct: 122 ANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVEIVTKGLEQ 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+  + D ++IDTAGRL  +  LM  +    R +K L    P+ +L V+D+  GQ A   
Sbjct: 180 ARENRNDYVLIDTAGRLQIDEKLMGEL----RDVKAL--AQPNEILLVIDSMIGQEAANV 233

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F     S+
Sbjct: 234 ADEFNKQLEITGVVLTKIDGDTRGGAALSVREITGRPIKFTGTGEKITDIETFHPDRMSS 293

Query: 309 VITGCLD 315
            I G  D
Sbjct: 294 RILGMGD 300


>gi|42560958|ref|NP_975409.1| Signal recognition particle M54 protein [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492455|emb|CAE77051.1| Signal recognition particle M54 protein [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301320640|gb|ADK69283.1| signal recognition particle protein [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 447

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 145/283 (51%), Gaps = 18/283 (6%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           ++ ++E L+++   L+ +D+ +   ++I+  +  K     +     + Q+++  V E + 
Sbjct: 26  EENIKETLKEIRLSLLEADVNIEATKEIINNVKQKALGGYIFEGANAHQQMIKIVHEELV 85

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRS 152
            +L   + P   + + +P V+++VG+ G GKTT   KL+  ++    K +L  G D +R 
Sbjct: 86  NILGKENAPL--ELNKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKVLLVGLDIYRP 143

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI+QL     +T+   V  +   D    A EA + AQ    DV+I+DTAGRL  + +LM
Sbjct: 144 GAIEQLIQLGQKTNIQ-VFEKGKQDPILTAQEALEYAQENNFDVVILDTAGRLQVDQVLM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +  + +        +P  +L V+D  +GQ  +     F++    +G+++TK+DG ARG
Sbjct: 203 TELDNLKK------KTSPSEILLVVDGMSGQEIINVTNEFNSKLKLSGVVVTKLDGDARG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + I    K+P+ F+G GEG N L  F  K  +  + G  D
Sbjct: 257 GATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGD 299


>gi|17986509|ref|NP_539143.1| signal recognition particle, subunit FFH/SRP54 [Brucella melitensis
           bv. 1 str. 16M]
 gi|225853269|ref|YP_002733502.1| signal recognition particle protein [Brucella melitensis ATCC
           23457]
 gi|256045424|ref|ZP_05448316.1| signal recognition particle protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256114399|ref|ZP_05455124.1| signal recognition particle protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263243|ref|ZP_05465775.1| signal recognition particle protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260565686|ref|ZP_05836169.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991853|ref|ZP_06104410.1| signal recognition particle protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265995692|ref|ZP_06108249.1| signal recognition particle protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|17982112|gb|AAL51407.1| signal recognition particle, subunit ffh/srp54 [Brucella melitensis
           bv. 1 str. 16M]
 gi|225641634|gb|ACO01548.1| signal recognition particle protein [Brucella melitensis ATCC
           23457]
 gi|260151059|gb|EEW86154.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|262766976|gb|EEZ12594.1| signal recognition particle protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263002809|gb|EEZ15212.1| signal recognition particle protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263093205|gb|EEZ17302.1| signal recognition particle protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326409830|gb|ADZ66895.1| signal recognition particle protein [Brucella melitensis M28]
 gi|326539546|gb|ADZ87761.1| signal recognition particle protein [Brucella melitensis M5-90]
          Length = 523

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GK++K++++   K V++A+ DT R AA +QL+    +T  D 
Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM  +  + +         
Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+     F    G TG+++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
             GE ++ LE F  K  +  I G  D
Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299


>gi|195978137|ref|YP_002123381.1| signal recognition particle protein Ffh [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225870534|ref|YP_002746481.1| signal recognition particle protein [Streptococcus equi subsp. equi
           4047]
 gi|195974842|gb|ACG62368.1| signal recognition particle protein Ffh [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225699938|emb|CAW93879.1| signal recognition particle protein [Streptococcus equi subsp. equi
           4047]
          Length = 523

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 149/306 (48%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L++    I   + L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTQRLQDVFKHIRGKKTLSEADVQEVTKEIRLALLEADVALPVVKTFIKRIRERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q++L  V+E +  +L   S+    D S + P VI++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQILKIVNEELTGILG--SETAELDKSPKIPTVIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +      QA
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTNHSAVDIVANGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  + + ++ L +     P+ +L V+D+  GQ A    
Sbjct: 181 KENRHDYVLIDTAGRLQIDEKLMGEL-REVKALAK-----PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 YEFNNQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|15673598|ref|NP_267772.1| signal recognition particle protein [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12724623|gb|AAK05714.1|AE006391_13 signal recognition particle protein Ffh [Lactococcus lactis subsp.
           lactis Il1403]
 gi|326407081|gb|ADZ64152.1| signal recognition particle subunit [Lactococcus lactis subsp.
           lactis CV56]
          Length = 518

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+KK+  +   + ++ A D +R AAIDQLK   ++     
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLAKKLKEEQNARPLMIAADVYRPAAIDQLKTLGEQLEIPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +      +AQ ++ D ++IDTAGRL  +  LM  + + I+ L       
Sbjct: 161 YDEGTAEKPVNIVRNGLLKAQEERKDYVLIDTAGRLEIDDTLMNEL-QEIKALAE----- 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +L V+DA TGQ A +  + F      TG+I+TK+DG  RGG  + I      P+ F 
Sbjct: 215 PTEILLVVDAMTGQVAAQVAKTFDEKLDITGVIITKLDGDTRGGAALSIREITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE + DLE F     S+ I G  D
Sbjct: 275 GTGEKLTDLEVFYPDRMSSRILGMGD 300


>gi|25028521|ref|NP_738575.1| putative signal recognition particle protein [Corynebacterium
           efficiens YS-314]
 gi|259507575|ref|ZP_05750475.1| signal recognition particle protein [Corynebacterium efficiens
           YS-314]
 gi|23493806|dbj|BAC18775.1| putative signal recognition particle protein [Corynebacterium
           efficiens YS-314]
 gi|259164849|gb|EEW49403.1| signal recognition particle protein [Corynebacterium efficiens
           YS-314]
          Length = 540

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 143/287 (49%), Gaps = 26/287 (9%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E + ++L   ++ 
Sbjct: 33  EIRLALLEADVSLTVVRSFISRIKERAAGAEVSQALNPAQQVIKIVNEELVQILGGETRR 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                +  P VI++ G+ G GKTT+ GKLSK ++  G   ML A D  R  A+ QL+I  
Sbjct: 93  LQLAKTP-PTVIMLAGLQGAGKTTLAGKLSKHLAAQGHTPMLVACDLQRPGAVQQLQIVG 151

Query: 163 DR-----------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           +R           TS D    E+G+   D  A+A    ++A+  + D++I+DTAGRL  +
Sbjct: 152 ERAGVTTFAPDPGTSIDSYEHEMGTSHGDPVAVAQAGIEEAKRTQHDIVIVDTAGRLGID 211

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM    + IR     D   P  VL V+D+  GQ+A+   E F      TG+++TK+DG
Sbjct: 212 ETLMT-QARNIR-----DAINPDEVLFVIDSMIGQDAVDTAEAFRDGVDFTGVVLTKLDG 265

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            ARGG  + I      P+ F   GE + D + F  +  ++ I G  D
Sbjct: 266 DARGGAALSIREVTGKPIMFASTGEKLEDFDVFHPERMASRILGMGD 312


>gi|330815473|ref|YP_004359178.1| Signal recognition particle protein [Burkholderia gladioli BSR3]
 gi|327367866|gb|AEA59222.1| Signal recognition particle protein [Burkholderia gladioli BSR3]
          Length = 455

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 110/209 (52%), Gaps = 13/209 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + D    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLRDKQKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVLI+DTAGRL  +  +M  I ++         HA
Sbjct: 164 FASTPDQKPVEIARAALDWAKRHYHDVLIVDTAGRLGIDEAMMKEIAEL---------HA 214

Query: 230 ---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+
Sbjct: 215 AINPAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHITGKPI 274

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+GV E ++ LE F     +  I G  D
Sbjct: 275 KFVGVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|322688491|ref|YP_004208225.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320459827|dbj|BAJ70447.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 544

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 145/298 (48%), Gaps = 32/298 (10%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKML- 96
           DG   E+   L+ +D+ + V +    ++  +    +VS      Q+V+  V+E +  +L 
Sbjct: 24  DGTIREIRRALLDADVALDVVRSFTGKVRERALGTEVSDALNPAQQVVKIVNEELTDVLG 83

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             + +P N+   + P +I++ G+ G GKTT+ GKL   + D+G   +L A D  R  A+ 
Sbjct: 84  QGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVT 142

Query: 157 QLKIWADRTSADFVCSEIG----------------SDAAALAYEAFKQAQAKKVDVLIID 200
           QL++  +R        E G                 D   +A ++ + A+ K  D +IID
Sbjct: 143 QLQVVGERAGVPVYAPEKGIQSDGGEAVAAPGQTSGDPVKVARDSIELAKQKLYDTVIID 202

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  LM    K  R ++  D   P+ +L V+DA  GQ+A++  + F      TG
Sbjct: 203 TAGRLGVDEELM----KQARDIR--DAVRPNEILFVIDAMIGQDAVKTAKAFDEGVDFTG 256

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           ++++K+DG ARGG  + +      P+ F   GEG+ D E F     ++ I   LD G+
Sbjct: 257 VVLSKLDGDARGGAALSVASVTGKPILFASNGEGLKDFEVFHPDRMASRI---LDMGD 311


>gi|302815721|ref|XP_002989541.1| hypothetical protein SELMODRAFT_129975 [Selaginella moellendorffii]
 gi|300142719|gb|EFJ09417.1| hypothetical protein SELMODRAFT_129975 [Selaginella moellendorffii]
          Length = 467

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 129/276 (46%), Gaps = 18/276 (6%)

Query: 47  EELEDLLIRSDIGVAVAQ-------KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
            E+   L+++D+   + Q       K VE+L      + +  + V ++    +H ML   
Sbjct: 33  NEITHALLQADVQFKLVQALSSNVRKSVEKLAAGHDKRHIIQKAVFHE----LHAML-DA 87

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            KP       R + +++VG+ G GKTT   K +      G    L   DTFR+ A DQLK
Sbjct: 88  GKPSFTPTKGRTNAVMLVGLQGCGKTTTCTKYALHYRKKGFNPALVCADTFRAGAFDQLK 147

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A +    F  S   +D   +A E  ++    K D++I+DT+GR    + L   + ++ 
Sbjct: 148 QNATKVKIPFYGSYTETDPVVIAQEGVRKFADTKHDLIILDTSGRHKQENALFEEMRQLA 207

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
                     P  ++ V+D++ GQ A  Q   F   A    +I+TK+DG A+GGG +  V
Sbjct: 208 AATN------PDLIIFVMDSSIGQAANDQALAFRESAKVGAVIITKIDGHAKGGGALSAV 261

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              K P+ FLG GE  +D E F +K F + + G  D
Sbjct: 262 AATKSPIIFLGTGEKADDFETFESKAFVSRLLGMGD 297


>gi|284992394|ref|YP_003410948.1| signal recognition particle protein [Geodermatophilus obscurus DSM
           43160]
 gi|284065639|gb|ADB76577.1| signal recognition particle protein [Geodermatophilus obscurus DSM
           43160]
          Length = 528

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 140/281 (49%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E + ++L 
Sbjct: 28  DATAREIRIALLEADVALPVVRTFIAAVKERARGAEVSQALNPAQQVIKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL + +   G   +L A D  R  A++Q
Sbjct: 88  GETRRLRY-AKQSPTVIMLAGLQGAGKTTLAGKLGRWLKAQGHTPLLVAADLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L I A +   D    E G+   D   +A ++ + A+    DV+++DTAGRL  ++ LMA 
Sbjct: 147 LSIVAGQAGVDVYAPEPGNGVGDPIRVAADSIEHARRTMHDVVVVDTAGRLGIDAELMAQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +  V++      P   L V+DA  GQ+A+   E F    G +G+++TK+DG ARGG 
Sbjct: 207 AAGIRDVVQ------PDETLFVVDAMIGQDAVTTAEAFRDGVGFSGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F   GE + D + F  +  ++ I G  D
Sbjct: 261 ALSVRYVTGQPIMFASTGEKLTDFDVFHPERMASRILGMGD 301


>gi|319649591|ref|ZP_08003747.1| signal recognition particle [Bacillus sp. 2_A_57_CT2]
 gi|317398753|gb|EFV79435.1| signal recognition particle [Bacillus sp. 2_A_57_CT2]
          Length = 450

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 112/210 (53%), Gaps = 8/210 (3%)

Query: 108 SHRPH-VILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT 165
           S+RP  VI++VG+ G GKTT  GKL+  +        ML A D +R AAI QL+    + 
Sbjct: 97  SNRPPTVIMMVGLQGAGKTTTTGKLANLLRKKYNRNPMLVAADIYRPAAIKQLETLGKQL 156

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +              +A +A  +A+    D ++IDTAGRLH +  LM  + K I+ L   
Sbjct: 157 NMPVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTAGRLHVDEALMDEL-KQIKELSN- 214

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  +  V+DA TGQ+A+   + F+ + G TG+++TK+DG  RGG  + I      P
Sbjct: 215 ----PDEIFLVVDAMTGQDAVNVAQSFNDLLGLTGVVLTKLDGDTRGGAALSIRSVTNTP 270

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G+GE ++ LE F  +  ++ I G  D
Sbjct: 271 IKFVGLGEKLDALEAFHPERMASRILGMGD 300


>gi|313901233|ref|ZP_07834721.1| signal recognition particle protein [Clostridium sp. HGF2]
 gi|312954191|gb|EFR35871.1| signal recognition particle protein [Clostridium sp. HGF2]
          Length = 470

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 149/302 (49%), Gaps = 22/302 (7%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A ESLS   +L K F + + K K      +S + ++D +RE +   L+ +D+   V + 
Sbjct: 1   MAFESLS--ERLGKAFKNITGKGK------LSEKNMNDMLRE-VRMSLLEADVNYGVVKD 51

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +  +  +    +V       Q V+  V + I  +L     P N+  S     +++VG+ 
Sbjct: 52  FIARVKEQALGTEVMTSLNPGQMVVKIVHDEIVALLGSEDAPVNYK-SSGITTVMMVGLQ 110

Query: 121 GVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT   K++  M      K +L A D  R AAI+QLK   +    +     + + A 
Sbjct: 111 GTGKTTASAKIANVMKKKQSRKPLLVACDVIRPAAIEQLKTLGESIGVEVFSLGVETKAL 170

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
             A ++   A+    D ++ DTAGRLH +  LM  +  +   +       P  +L  +DA
Sbjct: 171 ETAKQSMDYAKENGYDTVLFDTAGRLHIDEELMQELSDIKAFVH------PDDILLTVDA 224

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ+ +     FH     TGL++TK+DG +RGGG++ +    ++PV F+G+GE I+DL+
Sbjct: 225 MTGQDIVNVAGSFHEQLEVTGLVLTKLDGDSRGGGILSVRSITQVPVKFVGLGEKIDDLD 284

Query: 300 PF 301
            F
Sbjct: 285 VF 286


>gi|239617834|ref|YP_002941156.1| signal recognition particle protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506665|gb|ACR80152.1| signal recognition particle protein [Kosmotoga olearia TBF 19.5.1]
          Length = 438

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 12/255 (4%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +V +K + E + K +  D    +++ D  ELI K+L    K    + S  P  I++VG+ 
Sbjct: 54  SVQEKALGEEVLKSFTPDQQFIKIVRD--ELI-KVLG--EKKVGLNLSGSPAKIMLVGLQ 108

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT   KL+  +   G   +L A D +R AA+DQL I   +     V +    D   
Sbjct: 109 GSGKTTTSAKLALMLKKEGKHPLLVAADVYRPAAVDQL-IQLGKQIEVPVYTGDRKDPLK 167

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  EA  +A     DV+I DTAGRLH +  +M  + ++  ++K      P  +L V+DA 
Sbjct: 168 IVQEALDEAVKNVHDVIIFDTAGRLHVDEKMMEEVRRIAEIVK------PDEILMVIDAM 221

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQ+A+   + F+     TG ++TK+DG ARGG ++ +      PV F+G+ E ++ LE 
Sbjct: 222 TGQDAVNSAKKFNDELELTGFVVTKIDGDARGGVILSVRHVTGKPVKFVGISEKMDGLEY 281

Query: 301 FVAKDFSAVITGCLD 315
           F     +  I G  D
Sbjct: 282 FYPDRIAGRILGMGD 296


>gi|62290689|ref|YP_222482.1| Ffh, signal recognition particle protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82700604|ref|YP_415178.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
           biovar Abortus 2308]
 gi|189024903|ref|YP_001935671.1| Ffh, signal recognition particle protein [Brucella abortus S19]
 gi|237816190|ref|ZP_04595185.1| signal recognition particle protein [Brucella abortus str. 2308 A]
 gi|254694470|ref|ZP_05156298.1| Ffh, signal recognition particle protein [Brucella abortus bv. 3
           str. Tulya]
 gi|254698130|ref|ZP_05159958.1| Ffh, signal recognition particle protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254731014|ref|ZP_05189592.1| Ffh, signal recognition particle protein [Brucella abortus bv. 4
           str. 292]
 gi|256258233|ref|ZP_05463769.1| Ffh, signal recognition particle protein [Brucella abortus bv. 9
           str. C68]
 gi|260547073|ref|ZP_05822811.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260758737|ref|ZP_05871085.1| signal recognition particle protein [Brucella abortus bv. 4 str.
           292]
 gi|260762571|ref|ZP_05874908.1| signal recognition particle protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884536|ref|ZP_05896150.1| signal recognition particle protein [Brucella abortus bv. 9 str.
           C68]
 gi|261214786|ref|ZP_05929067.1| signal recognition particle protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|297249082|ref|ZP_06932790.1| signal recognition particle protein [Brucella abortus bv. 5 str.
           B3196]
 gi|62196821|gb|AAX75121.1| Ffh, signal recognition particle protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82616705|emb|CAJ11790.1| Disease resistance protein:GTP-binding signal recognition particle
           (SRP54) G-domain:ATP/GTP-binding site motif A
           (P-loop):AAA [Brucella melitensis biovar Abortus 2308]
 gi|189020475|gb|ACD73197.1| Ffh, signal recognition particle protein [Brucella abortus S19]
 gi|237788652|gb|EEP62865.1| signal recognition particle protein [Brucella abortus str. 2308 A]
 gi|260095438|gb|EEW79316.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260669055|gb|EEX55995.1| signal recognition particle protein [Brucella abortus bv. 4 str.
           292]
 gi|260672997|gb|EEX59818.1| signal recognition particle protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260874064|gb|EEX81133.1| signal recognition particle protein [Brucella abortus bv. 9 str.
           C68]
 gi|260916393|gb|EEX83254.1| signal recognition particle protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|297174215|gb|EFH33572.1| signal recognition particle protein [Brucella abortus bv. 5 str.
           B3196]
          Length = 523

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GK++K++++   K V++A+ DT R AA +QL+    +T  D 
Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM  +  + +         
Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+     F    G TG+++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
             GE ++ LE F  K  +  I G  D
Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299


>gi|134294678|ref|YP_001118413.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           vietnamiensis G4]
 gi|134137835|gb|ABO53578.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           vietnamiensis G4]
          Length = 455

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVLI+DTAGRL  +  +M  I  +  VLK      
Sbjct: 164 FPSTPDQKPVDIALAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGVLK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|222478931|ref|YP_002565168.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halorubrum lacusprofundi ATCC 49239]
 gi|254772972|sp|B9LT33|SRP54_HALLT RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|222451833|gb|ACM56098.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halorubrum lacusprofundi ATCC 49239]
          Length = 464

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 129/278 (46%), Gaps = 28/278 (10%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTK---------RYAKDVSVQRVLYDVSELI-HKMLM 97
           E++  L+ +D+ V++  ++ + + T+           AKD  ++ V  ++ EL+     +
Sbjct: 34  EIQRSLLSADVDVSLVMELSDSIKTRALEEEPPGGTTAKDHVLKIVYEEMVELVGDSTEL 93

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           PL              IL+ G+ G GKTT   K++   S  GL+  +   DTFR  A DQ
Sbjct: 94  PLEN----------QTILLAGLQGSGKTTSAAKMAWWFSKKGLRPAVIQTDTFRPGAYDQ 143

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            K   +R   DF       D  A+A E  +       DV I+DTAGR      L+A I +
Sbjct: 144 AKQMCERAEVDFYGDPDNDDPVAIAREGLEAT--ADADVHIVDTAGRHALEDDLIAEIEE 201

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + R +       P   L VLDA  GQ A  Q   F    G  G+++TK+DGTA+GGG + 
Sbjct: 202 IERAVD------PDRSLLVLDAAIGQGAKEQARQFEKSIGIEGVMITKLDGTAKGGGALT 255

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            V      + FLG GE + D+E F    F + + G  D
Sbjct: 256 AVNETDSSIAFLGTGETVQDIERFEPSGFISRLLGMGD 293


>gi|153952174|ref|YP_001398346.1| signal recognition particle protein [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939620|gb|ABS44361.1| signal recognition particle protein [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 445

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 140/271 (51%), Gaps = 15/271 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLT--KRYAKD--VSVQRVLYDVSELIHKMLMPLSKP 102
           E L+  L+++D    V  K+ +ELLT  +  AK   +  ++ L  +   +  +L    K 
Sbjct: 30  ETLKKALLKAD----VHHKVTKELLTLIEEDAKQNGIGQKQFLNAIKINLENILSVNGKN 85

Query: 103 FNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
            ++ F+ +P  V+L+ G+ G GKTT   KL+  +     KV++AA D  R AA++QL+  
Sbjct: 86  QSFVFASKPPTVVLMTGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQL 145

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            +    +    E   D   +A EA K+A++  VDVL++DTAGRL  +  LM  +  +  V
Sbjct: 146 CEANEIELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKAVKDV 205

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           L       P  +  V DA +GQ+ ++    F+     +G+I++K D   +GG  + I   
Sbjct: 206 LN------PDEIFYVADAMSGQDGVKTAASFNEALNISGVILSKFDADTKGGVALGIAKQ 259

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             IP+ F+GVGE + DLE F+     + I G
Sbjct: 260 IGIPLRFIGVGEKVADLEVFIPDRIVSRIMG 290


>gi|46190760|ref|ZP_00206561.1| COG0541: Signal recognition particle GTPase [Bifidobacterium longum
           DJO10A]
 gi|189439913|ref|YP_001954994.1| signal recognition particle GTPase [Bifidobacterium longum DJO10A]
 gi|239622495|ref|ZP_04665526.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312133329|ref|YP_004000668.1| ffh [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482005|ref|ZP_07941030.1| signal recognition particle protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322690501|ref|YP_004220071.1| signal recognition particle protein [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189428348|gb|ACD98496.1| Signal recognition particle GTPase [Bifidobacterium longum DJO10A]
 gi|239514492|gb|EEQ54359.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311772547|gb|ADQ02035.1| FFh [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916572|gb|EFV37969.1| signal recognition particle protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320455357|dbj|BAJ65979.1| signal recognition particle protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 544

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 145/298 (48%), Gaps = 32/298 (10%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKML- 96
           DG   E+   L+ +D+ + V +    ++  +    +VS      Q+V+  V+E +  +L 
Sbjct: 24  DGTIREIRRALLDADVALDVVRSFTGKVRERALGTEVSDALNPAQQVVKIVNEELTDVLG 83

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             + +P N+   + P +I++ G+ G GKTT+ GKL   + D+G   +L A D  R  A+ 
Sbjct: 84  QGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVT 142

Query: 157 QLKIWADRTSADFVCSEIG----------------SDAAALAYEAFKQAQAKKVDVLIID 200
           QL++  +R        E G                 D   +A ++ + A+ K  D +IID
Sbjct: 143 QLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQTSGDPVKVARDSIELAKQKLYDTVIID 202

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  LM    K  R ++  D   P+ +L V+DA  GQ+A++  + F      TG
Sbjct: 203 TAGRLGVDEELM----KQARDIR--DAVRPNEILFVIDAMIGQDAVKTAKAFDEGVDFTG 256

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           ++++K+DG ARGG  + +      P+ F   GEG+ D E F     ++ I   LD G+
Sbjct: 257 VVLSKLDGDARGGAALSVASVTGKPILFASNGEGLKDFEVFHPDRMASRI---LDMGD 311


>gi|256160521|ref|ZP_05458210.1| signal recognition particle protein [Brucella ceti M490/95/1]
 gi|256255727|ref|ZP_05461263.1| signal recognition particle protein [Brucella ceti B1/94]
 gi|261222941|ref|ZP_05937222.1| signal recognition particle protein [Brucella ceti B1/94]
 gi|265998900|ref|ZP_06111457.1| signal recognition particle protein [Brucella ceti M490/95/1]
 gi|260921525|gb|EEX88178.1| signal recognition particle protein [Brucella ceti B1/94]
 gi|262553589|gb|EEZ09358.1| signal recognition particle protein [Brucella ceti M490/95/1]
          Length = 523

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GK++K++++   K V++A+ DT R AA +QL+    +T  D 
Sbjct: 100 PVVIMMVGLQGSGKTTATGKIAKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM  +  + +         
Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+     F    G TG+++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
             GE ++ LE F  K  +  I G  D
Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299


>gi|254719813|ref|ZP_05181624.1| signal recognition particle protein [Brucella sp. 83/13]
 gi|265984832|ref|ZP_06097567.1| signal recognition particle protein [Brucella sp. 83/13]
 gi|306839510|ref|ZP_07472318.1| signal recognition particle protein [Brucella sp. NF 2653]
 gi|306841605|ref|ZP_07474302.1| signal recognition particle protein [Brucella sp. BO2]
 gi|306844807|ref|ZP_07477392.1| signal recognition particle protein [Brucella sp. BO1]
 gi|264663424|gb|EEZ33685.1| signal recognition particle protein [Brucella sp. 83/13]
 gi|306274979|gb|EFM56749.1| signal recognition particle protein [Brucella sp. BO1]
 gi|306288351|gb|EFM59714.1| signal recognition particle protein [Brucella sp. BO2]
 gi|306405455|gb|EFM61726.1| signal recognition particle protein [Brucella sp. NF 2653]
          Length = 523

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GK++K++++   K V++A+ DT R AA +QL+    +T  D 
Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM  +  + +         
Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+     F    G TG+++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
             GE ++ LE F  K  +  I G  D
Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299


>gi|148560502|ref|YP_001259663.1| signal recognition particle protein [Brucella ovis ATCC 25840]
 gi|161619746|ref|YP_001593633.1| signal recognition particle protein [Brucella canis ATCC 23365]
 gi|163845404|ref|YP_001623059.1| signal recognition particle protein [Brucella suis ATCC 23445]
 gi|225628377|ref|ZP_03786411.1| signal recognition particle protein [Brucella ceti str. Cudo]
 gi|254703590|ref|ZP_05165418.1| signal recognition particle protein [Brucella suis bv. 3 str. 686]
 gi|254708323|ref|ZP_05170151.1| signal recognition particle protein [Brucella pinnipedialis
           M163/99/10]
 gi|254708825|ref|ZP_05170636.1| signal recognition particle protein [Brucella pinnipedialis B2/94]
 gi|254714665|ref|ZP_05176476.1| signal recognition particle protein [Brucella ceti M644/93/1]
 gi|254717563|ref|ZP_05179374.1| signal recognition particle protein [Brucella ceti M13/05/1]
 gi|256030351|ref|ZP_05443965.1| signal recognition particle protein [Brucella pinnipedialis
           M292/94/1]
 gi|256061847|ref|ZP_05451982.1| signal recognition particle protein [Brucella neotomae 5K33]
 gi|256370230|ref|YP_003107741.1| signal recognition particle protein [Brucella microti CCM 4915]
 gi|260168024|ref|ZP_05754835.1| signal recognition particle protein [Brucella sp. F5/99]
 gi|260568896|ref|ZP_05839364.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261219397|ref|ZP_05933678.1| signal recognition particle protein [Brucella ceti M13/05/1]
 gi|261315822|ref|ZP_05955019.1| signal recognition particle protein [Brucella pinnipedialis
           M163/99/10]
 gi|261316318|ref|ZP_05955515.1| signal recognition particle protein [Brucella pinnipedialis B2/94]
 gi|261322459|ref|ZP_05961656.1| signal recognition particle protein [Brucella ceti M644/93/1]
 gi|261325854|ref|ZP_05965051.1| signal recognition particle protein [Brucella neotomae 5K33]
 gi|261754225|ref|ZP_05997934.1| signal recognition particle protein [Brucella suis bv. 3 str. 686]
 gi|261757471|ref|ZP_06001180.1| signal recognition particle protein [Brucella sp. F5/99]
 gi|265987387|ref|ZP_06099944.1| signal recognition particle protein [Brucella pinnipedialis
           M292/94/1]
 gi|294851065|ref|ZP_06791741.1| signal recognition particle protein [Brucella sp. NVSL 07-0026]
 gi|148371759|gb|ABQ61738.1| signal recognition particle protein [Brucella ovis ATCC 25840]
 gi|161336557|gb|ABX62862.1| signal recognition particle protein [Brucella canis ATCC 23365]
 gi|163676127|gb|ABY40237.1| signal recognition particle protein [Brucella suis ATCC 23445]
 gi|225616223|gb|EEH13271.1| signal recognition particle protein [Brucella ceti str. Cudo]
 gi|256000393|gb|ACU48792.1| signal recognition particle protein [Brucella microti CCM 4915]
 gi|260154280|gb|EEW89362.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|260924486|gb|EEX91054.1| signal recognition particle protein [Brucella ceti M13/05/1]
 gi|261295149|gb|EEX98645.1| signal recognition particle protein [Brucella ceti M644/93/1]
 gi|261295541|gb|EEX99037.1| signal recognition particle protein [Brucella pinnipedialis B2/94]
 gi|261301834|gb|EEY05331.1| signal recognition particle protein [Brucella neotomae 5K33]
 gi|261304848|gb|EEY08345.1| signal recognition particle protein [Brucella pinnipedialis
           M163/99/10]
 gi|261737455|gb|EEY25451.1| signal recognition particle protein [Brucella sp. F5/99]
 gi|261743978|gb|EEY31904.1| signal recognition particle protein [Brucella suis bv. 3 str. 686]
 gi|264659584|gb|EEZ29845.1| signal recognition particle protein [Brucella pinnipedialis
           M292/94/1]
 gi|294821708|gb|EFG38704.1| signal recognition particle protein [Brucella sp. NVSL 07-0026]
          Length = 523

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GK++K++++   K V++A+ DT R AA +QL+    +T  D 
Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM  +  + +         
Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+     F    G TG+++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
             GE ++ LE F  K  +  I G  D
Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299


>gi|150025532|ref|YP_001296358.1| Signal recognition particle protein [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772073|emb|CAL43549.1| Signal recognition particle protein [Flavobacterium psychrophilum
           JIP02/86]
          Length = 449

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 112/211 (53%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           + S  P VIL+ G+ G GKTT  GKL+  + +    K +L A D +R AAI+QL +   +
Sbjct: 94  NLSGTPTVILMSGLQGSGKTTFSGKLANFLKTKKNKKPLLVACDIYRPAAINQLHVVGGQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +        +   +A  A K A+A   +V+I+DTAGRL  +  +MA I ++ + ++ 
Sbjct: 154 IGVEVYSEPENKNPVEIAQNAIKHAKANGFNVVIVDTAGRLAVDEEMMAEISRVHKAIQ- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+DA TGQ+A+   + F+ +    G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDAMTGQDAVNTAKAFNDILNFDGVILTKLDGDTRGGAAISIKSVVNK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE ++ ++ F  +  +  I G  D
Sbjct: 268 PIKFVGTGEKMDAIDVFYPERMAERILGMGD 298


>gi|296453537|ref|YP_003660680.1| signal recognition particle protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296182968|gb|ADG99849.1| signal recognition particle protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 603

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 36/324 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +    ++  +   
Sbjct: 57  FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALG 116

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 117 TEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 175

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D+G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 176 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQT 235

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A ++ + A+ K  D +IIDTAGRL  +  LM    K  R ++  D   P+ +L
Sbjct: 236 SGDPVKVARDSIELAKQKLYDTVIIDTAGRLGVDEELM----KQARDIR--DAVHPNEIL 289

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG
Sbjct: 290 FVIDAMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNGEG 349

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           + D E F     ++ I   LD G+
Sbjct: 350 LKDFEVFHPDRMASRI---LDMGD 370


>gi|163786134|ref|ZP_02180582.1| signal recognition particle protein [Flavobacteriales bacterium
           ALC-1]
 gi|159877994|gb|EDP72050.1| signal recognition particle protein [Flavobacteriales bacterium
           ALC-1]
          Length = 443

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 109/211 (51%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           + S  P +IL+ G+ G GKTT  GKL+  + S    K +L A D +R AAIDQL +  D+
Sbjct: 94  NLSGNPSIILMSGLQGSGKTTFSGKLANYLKSKKTKKPLLVACDVYRPAAIDQLHVVGDQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +       +D  A++      A+A   +V+IIDTAGRL  +  +M  I  + + ++ 
Sbjct: 154 IGVEVFSDRGNNDPVAISQAGIAHAKANGHNVVIIDTAGRLAVDEAMMTEISNIHKAIQ- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+D+ TGQ+A+   + F+ +    G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDILNFDGVILTKLDGDTRGGAAISIKSVVNK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +  ++ F     +  I G  D
Sbjct: 268 PIKFIGTGEKMEAIDVFYPSRMADRILGMGD 298


>gi|239636284|ref|ZP_04677286.1| signal recognition particle protein [Staphylococcus warneri L37603]
 gi|239597639|gb|EEQ80134.1| signal recognition particle protein [Staphylococcus warneri L37603]
 gi|330685685|gb|EGG97326.1| signal recognition particle protein [Staphylococcus epidermidis
           VCU121]
          Length = 455

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  M      K ML AGD +R AAIDQL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQLDVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +   A   A+ + +D +IIDTAGRLH +  LM  + ++  + K      
Sbjct: 161 YSEGDQVKPQQIVQNALAHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEIAK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ V+DA TGQ+A+   + F      TG+ +TK+DG  RGG  + I    + P+ F+
Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDEQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+ E ++ LE F  +  ++ I G  D
Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300


>gi|239624000|ref|ZP_04667031.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522031|gb|EEQ61897.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 458

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++ S  RL +  V+  L+++   L+ +D+   V ++ + +L  +   
Sbjct: 3   FESLSDKLQNVFKNLRSKGRLTEADVKAALKEVKMALLEADVSFRVVKQFISDLQKRAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +        +   +I++ G+ G GKTT   K+
Sbjct: 63  EDVFGSLTPGQTVVKIVTEELVKLMGSETTEIALKPGNEITIIMMAGLQGAGKTTTTAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G K +LAA D +R AAI QL++  ++           +    +A  A + A  
Sbjct: 123 AAKLKAKGRKPLLAACDVYRPAAIKQLQVNGEKVGIPVFSMGDKNKPVDIAKAAVEHAAK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             ++V+I+DTAGRLH +  +M    ++I +   +D H   ++L V+DA TGQ+A+     
Sbjct: 183 NGMNVVILDTAGRLHIDEDMME---ELIEIKSNVDVH--QTIL-VVDAMTGQDAVNVSGS 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FNDKVGIDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|56416940|ref|YP_154014.1| signal recognition particle protein [Anaplasma marginale str. St.
           Maries]
 gi|222475306|ref|YP_002563723.1| signal recognition particle protein (ffh) [Anaplasma marginale str.
           Florida]
 gi|254995122|ref|ZP_05277312.1| signal recognition particle protein (ffh) [Anaplasma marginale str.
           Mississippi]
 gi|255004414|ref|ZP_05279215.1| signal recognition particle protein (ffh) [Anaplasma marginale str.
           Virginia]
 gi|56388172|gb|AAV86759.1| signal recognition particle protein [Anaplasma marginale str. St.
           Maries]
 gi|222419444|gb|ACM49467.1| signal recognition particle protein (ffh) [Anaplasma marginale str.
           Florida]
          Length = 451

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 156/290 (53%), Gaps = 15/290 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L KG AS   KL  G    IS +  D  V E++   L+ +D+ + V ++ + ++ +K   
Sbjct: 5   LAKGIASAVQKL--GGRREISDKDFD-LVLEDVTQALLDADVNLMVVEQFIGDVKSKIVG 61

Query: 77  KDVSVQRVLYD--VSELIHKMLMPL--SKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKL 131
            +V V+ VL +  + +L+ + L+ +  ++    D S + P  I++VG+ GVGKTT   K+
Sbjct: 62  GEV-VKGVLPEQMIIKLMEECLIEVLGNEKSELDLSGKAPVAIMMVGLQGVGKTTNTVKV 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+  +  KV++A+ D +R AA +QL + A     D +    G     +A  A K+A+ 
Sbjct: 121 AFKLKKSEKKVLVASLDVYRPAAQEQLGVLAQGVGVDSLPIVEGELPLDIAKRAMKEAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRLH +  +   IG++  V K +   +P+  + V+D   GQ+A+  V  
Sbjct: 181 GGYDVVIVDTAGRLHIDQEM---IGELQLVKKEV---SPNETILVVDCMMGQDAVEVVRG 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           FH     TG I T+ DG +RGG ++ + +    P+ F+  GE   DL+ F
Sbjct: 235 FHDKLNLTGTIFTRADGDSRGGAILSMKMVSGCPIKFMSTGEKPEDLDDF 284


>gi|78224068|ref|YP_385815.1| signal recognition particle subunit FFH/SRP54 (srp54) [Geobacter
           metallireducens GS-15]
 gi|78195323|gb|ABB33090.1| signal recognition particle subunit FFH/SRP54 (srp54) [Geobacter
           metallireducens GS-15]
          Length = 452

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           ++ ++E L ++   L+ +D+   V +  VE++  +     V       Q+V+  V E + 
Sbjct: 24  EENIKEALREVRLVLLEADVNFKVVKDFVEKVRERAVGTQVLQSLSPGQQVIKIVQEELV 83

Query: 94  KMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
             LM   +  + D + +P V +++VG+ G GKTT  GKL++ +     + +L   D +R 
Sbjct: 84  A-LMGGGEDNSLDLAAKPPVALMMVGLQGSGKTTTCGKLARLLKGQRRRPLLVPADVYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL+    + S +   S    D   +  EA + A     D +I+DTAGRL  +  LM
Sbjct: 143 AAIEQLRTLGRQLSVETFDSRADQDPVDICREALRYATLNGFDTVILDTAGRLQIDEYLM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
               +++R+ + +    P  +L V DA TGQ A+     F+     TG+++TK+DG A+G
Sbjct: 203 ---NELVRIKEAVQ---PREILFVADAMTGQEAVNVATGFNERLDITGVVLTKLDGDAKG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + I      PV  +G+GE ++ LE F      + I G  D
Sbjct: 257 GAALSIRAVTGKPVKLVGLGEKLDALEVFYPDRLVSRILGMGD 299


>gi|325281983|ref|YP_004254525.1| signal recognition particle protein [Odoribacter splanchnicus DSM
           20712]
 gi|324313792|gb|ADY34345.1| signal recognition particle protein [Odoribacter splanchnicus DSM
           20712]
          Length = 441

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 115/229 (50%), Gaps = 9/229 (3%)

Query: 90  ELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-A 146
           +++H  L  L   K    D    P +IL+ G+ G GKTT  GK +  + +   K  L  A
Sbjct: 76  KIVHDELAELMGGKNVEVDIKGNPAIILMSGLQGSGKTTFSGKFANLLKNKKGKKPLLVA 135

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AAI+QLK+  ++        E   D   +A +A KQA+AK  DV+I+DTAGRL 
Sbjct: 136 CDVYRPAAIEQLKVLGEQIQVPVYSDETTKDPVRIALDAIKQAKAKGYDVVIVDTAGRLA 195

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  +M  I  +   +       P+  L V+DA TGQ+A+     F+      G+I+TK+
Sbjct: 196 IDEQMMNEIAAIKEAIH------PNETLFVVDAMTGQDAVNTAREFNERLDFNGVILTKL 249

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + I      P+ ++G GE +  L+ F  +  +  I G  D
Sbjct: 250 DGDTRGGAALSIRTVVNKPIKYVGTGEKLEALDAFHPERMADRILGMGD 298


>gi|238809775|dbj|BAH69565.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 459

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 8/211 (3%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADR 164
            + RP++I++ G+ G GKTT   KL+  +       K ++ A D +R AA+ QL   A  
Sbjct: 101 ITARPYIIMMAGLQGSGKTTACAKLAYYLRKKNFVTKPLVVAADIYRPAAVQQLVTLAKS 160

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              D+        A  +  EA K A A+K D++IIDTAGRL  +  LM  +  + ++   
Sbjct: 161 IQIDYFEKGTNVSAQDIVKEALKVADAQKNDLIIIDTAGRLSIDEPLMQELWDLKKI--- 217

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  +  V DA +GQ+ L   E F+     TG I+TK+D  ARGG  + +    K+
Sbjct: 218 ---ANPSEIFFVADALSGQDILNVAETFNNKLKLTGTIITKLDSDARGGAALSLTKMLKL 274

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +++L+ F     +  I G  D
Sbjct: 275 PIRFIGTGEKVSNLDLFYPDRMADRILGMGD 305


>gi|66362756|ref|XP_628344.1| SRP54. signal recognition 54.  GTpase. [Cryptosporidium parvum Iowa
           II]
 gi|46229785|gb|EAK90603.1| SRP54. signal recognition 54.  GTpase. [Cryptosporidium parvum Iowa
           II]
          Length = 515

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           V EL++ +L P   P+      + +VI+ VG+ G GKTT   K +      G K  L   
Sbjct: 95  VEELVN-ILTPSRTPYVPQ-RDKSNVIVFVGLQGSGKTTTCTKFANYYQRRGWKTALVCA 152

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+ A DQLK  A +    F  S   +D   +A +  ++ + +  D++I+DT+GR   
Sbjct: 153 DTFRAGAFDQLKQNATKVKIPFYGSYTETDPVKIARDGVREFRKEGYDLIIVDTSGRHKQ 212

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            S L     +M +V+   +   P  V+ V+D+  GQ    Q   F        +I+TK+D
Sbjct: 213 ESSLFV---EMEQVVMETN---PDDVVFVMDSHIGQACYDQAMAFCNAVDVGSVIITKLD 266

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G A+GGG +  V     P+ F+G GE  ++ EPF  K F + + G  D
Sbjct: 267 GHAKGGGALSAVAATGAPIIFIGTGEHFDEFEPFETKGFVSRLLGLGD 314


>gi|312221554|emb|CBY01494.1| similar to signal recognition particle 54 kda protein
           [Leptosphaeria maculans]
          Length = 533

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 150/301 (49%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVA----QKIVEELLTKRYAKD 78
           ++   +TD+  S  LD    D + +E+ + L+ +D+ V +     Q I   +  K  A  
Sbjct: 9   RINAAVTDLTRSPNLDEKAFDAMVKEISNALVEADVNVKLVMNLRQSIKRTVDFKHLAPG 68

Query: 79  VS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           V+    +Q+ +YD  EL+ K++ P ++PF      + +VI+ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKAVYD--ELV-KLVDPHAEPFKPR-KGKSNVIMFVGLQGAGKTTTCTKLARW 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G K  L   DTFR+ A DQLK  A +    +  S   +D   +A E  ++ + ++ 
Sbjct: 125 YQARGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSHTQTDPVVVAGEGVEKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +++I+DT+GR      L     +M+++   +    P   + VLD T GQ A  Q   F  
Sbjct: 185 EIIIVDTSGRHRQEKDL---FDEMVQIQNAVQ---PDQTIMVLDGTIGQAAESQARAFKE 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +++TK DG A GGG I  V     P+ F+G GE + DLE F  + F + + G  
Sbjct: 239 AADFGAIVITKTDGAAAGGGAISAVAATHTPIVFIGNGEHLLDLERFAPQAFVSKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|21242042|ref|NP_641624.1| signal recognition particle protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107444|gb|AAM36160.1| signal recognition particle protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 458

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 140/275 (50%), Gaps = 22/275 (8%)

Query: 39  RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q ++  V +
Sbjct: 21  RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   +   N +    P ++L+ G+ G GKTT +GKL+K + +   K VM+ + D 
Sbjct: 81  ELTAVMGAAATDLNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A++    F  S+       +   A   A+   VDVL++DTAGRL  ++
Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDA 199

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +M  I  +         HA   P   L V+DA TGQ+A    + F      TG+++TK 
Sbjct: 200 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           DG ARGG  + +      P+ F+G GE I+ L+ F
Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKIDGLDVF 285


>gi|319441356|ref|ZP_07990512.1| signal recognition particle protein [Corynebacterium variabile DSM
           44702]
          Length = 532

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 140/284 (49%), Gaps = 30/284 (10%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-------QRVLYDVSELIHKMLMPLSKPFNW 105
           L+ +D+ + V +  ++ +  K  A  V V       Q+V+  V E + ++L   ++  N 
Sbjct: 38  LLEADVSLTVVRGFIKRV--KERANGVVVSEALNPAQQVIKIVDEELKEILGGETRRLNL 95

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR- 164
              + P VI++ G+ G GKTT+ GKL+K +   G   ML A D  R  A+ QL+I  +R 
Sbjct: 96  -AKNPPTVIMLAGLQGAGKTTLAGKLAKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERA 154

Query: 165 ----------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
                     TS D +  E+G+   D  A+A    ++A+  K DV+IIDTAGRL  +  L
Sbjct: 155 DVTTFAPDPGTSLDSLDHEMGTSHGDPVAVAQAGIEEARRTKHDVVIIDTAGRLGIDEEL 214

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M    + IR     D   P  VL V+DA  GQ+A+   E F      TG+++TK+DG AR
Sbjct: 215 MTQ-ARNIR-----DAVNPDEVLFVIDAMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDAR 268

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG  + I      P+ +   GE + D + F     +  I G  D
Sbjct: 269 GGAALSIREVTGKPILYASTGEKLEDFDIFHPDRMANRILGMGD 312


>gi|322389552|ref|ZP_08063102.1| signal recognition particle protein [Streptococcus parasanguinis
           ATCC 903]
 gi|321143746|gb|EFX39174.1| signal recognition particle protein [Streptococcus parasanguinis
           ATCC 903]
          Length = 523

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    + +   
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                   A  +  +  +QA+A   D ++IDTAGRL  +  LM  +    R +K L    
Sbjct: 161 FSLGTEVPAVEIVRQGLEQARANHNDYVLIDTAGRLQIDEKLMGEL----RDVKAL--AE 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ +L V+DA  GQ A      F+     TG+I+TK+DG  RGG  + +      P+ F 
Sbjct: 215 PNEILLVVDAMIGQEAANVAREFNEQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I D+E F     S  I G  D
Sbjct: 275 GTGEKITDIETFHPDRMSGRILGMGD 300


>gi|254700468|ref|ZP_05162296.1| signal recognition particle protein [Brucella suis bv. 5 str. 513]
 gi|261750971|ref|ZP_05994680.1| signal recognition particle protein [Brucella suis bv. 5 str. 513]
 gi|261740724|gb|EEY28650.1| signal recognition particle protein [Brucella suis bv. 5 str. 513]
          Length = 523

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GK++K++++   K V++A+ DT R AA +QL+    +T  D 
Sbjct: 100 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM  +  + +         
Sbjct: 160 LPIIAGQSPVEIARRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+     F    G TG+++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHKILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
             GE ++ LE F  K  +  I G  D
Sbjct: 274 ATGEKMDALEEFYPKRIADRILGMGD 299


>gi|195491937|ref|XP_002093779.1| GE21487 [Drosophila yakuba]
 gi|194179880|gb|EDW93491.1| GE21487 [Drosophila yakuba]
          Length = 508

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 8/226 (3%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+ K++ P  KP+      + +V++ VG+ G GKTT   KL+        K  L   DT
Sbjct: 82  ELV-KLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ+K  A +    F  S    D   +A E     + +  +++I+DT+GR     
Sbjct: 140 FRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L         +L   +  +P +++ V+DAT GQ    Q + F        +I+TK+DG 
Sbjct: 200 SLFE------EMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299


>gi|319947050|ref|ZP_08021284.1| signal recognition particle protein [Streptococcus australis ATCC
           700641]
 gi|319747098|gb|EFV99357.1| signal recognition particle protein [Streptococcus australis ATCC
           700641]
          Length = 523

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    + +   
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                   A  +  +  +QA+A   D ++IDTAGRL  +  LM  +    R +K L    
Sbjct: 161 FSLGTEVPAVEIVRQGLEQARANHNDYVLIDTAGRLQIDEKLMGEL----RDVKAL--AE 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ +L V+DA  GQ A      F+     TG+I+TK+DG  RGG  + +      P+ F 
Sbjct: 215 PNEILLVVDAMIGQEAANVAREFNEQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I D+E F     S  I G  D
Sbjct: 275 GTGEKITDIETFHPDRMSGRILGMGD 300


>gi|312866548|ref|ZP_07726763.1| signal recognition particle protein [Streptococcus parasanguinis
           F0405]
 gi|311097847|gb|EFQ56076.1| signal recognition particle protein [Streptococcus parasanguinis
           F0405]
          Length = 518

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    + +   
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                   A  +  +  +QA+A   D ++IDTAGRL  +  LM  +    R +K L    
Sbjct: 161 FSLGTEVPAVEIVRQGLEQARANHNDYVLIDTAGRLQIDEKLMGEL----RDVKAL--AE 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ +L V+DA  GQ A      F+     TG+I+TK+DG  RGG  + +      P+ F 
Sbjct: 215 PNEILLVVDAMIGQEAANVAREFNEQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I D+E F     S  I G  D
Sbjct: 275 GTGEKITDIETFHPDRMSGRILGMGD 300


>gi|239832906|ref|ZP_04681235.1| signal recognition particle protein [Ochrobactrum intermedium LMG
           3301]
 gi|239825173|gb|EEQ96741.1| signal recognition particle protein [Ochrobactrum intermedium LMG
           3301]
          Length = 710

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GK++K++++   K V++A+ DT R AA +QL+    +T  D 
Sbjct: 287 PVVIMMVGLQGSGKTTTTGKIAKRLTERQRKKVLMASLDTRRPAAQEQLRQLGIQTGVDT 346

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM  +  + +         
Sbjct: 347 LPIIAGQSPVEIAKRAVQAAKLGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------ 400

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+     F    G TG+++T+MDG  RGG  + +      P+  +
Sbjct: 401 PHEILLVADSLTGQDAVNLARNFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLI 460

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
             GE ++ LE F  K  +  I G  D
Sbjct: 461 ATGEKMDALEEFYPKRIADRILGMGD 486


>gi|303258186|ref|ZP_07344193.1| signal recognition particle protein [Burkholderiales bacterium
           1_1_47]
 gi|302858939|gb|EFL82023.1| signal recognition particle protein [Burkholderiales bacterium
           1_1_47]
          Length = 464

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P +IL+ G+ G GKTT  GKL K + +   K V+  + D +R AAIDQL+  + + +
Sbjct: 101 TQPPAIILLAGLQGAGKTTTAGKLGKWLKEEKKKKVLTVSADVYRPAAIDQLQTVSQQAN 160

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S        +A +A + A+    DVLI+DTAGRL  +  +M  +  + + L    
Sbjct: 161 IDFFPSTPNEKPLDIARKALEYAKLHYYDVLIVDTAGRLAIDEQMMNEVSDLEKFLN--- 217

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P     V+DA  GQ+A+   + F      TG+I+TK+DG +RGG  + + +    P+
Sbjct: 218 ---PIETFFVVDAMVGQDAVNTAKAFGEKLPLTGVILTKVDGDSRGGAALSVRMVTGKPI 274

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+GVGE +N  + F  +  +  I G  D
Sbjct: 275 KFMGVGEKLNGFQRFDPQAMAGRILGMGD 303


>gi|325528039|gb|EGD05259.1| signal recognition particle protein [Burkholderia sp. TJI49]
          Length = 455

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVLI+DTAGRL  +  +M  I  +  VLK      
Sbjct: 164 FPSTPEQKPVDIALAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGVLK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|145514351|ref|XP_001443086.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410447|emb|CAK75689.1| unnamed protein product [Paramecium tetraurelia]
          Length = 507

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 127/275 (46%), Gaps = 20/275 (7%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-------------KMLMPLS 100
           I  +I +A+ +  V     K+  +DV ++  L +   + H             +ML    
Sbjct: 31  ILGEIAMALLKADVNAKFIKKLREDVKMEFKLCEEENINHQKLIQKAVVDGLTRMLESDR 90

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           KPF      + +VI+ VG+ G GKTT   K +      G KV L   DTFR+ A DQLK 
Sbjct: 91  KPFQPK-KGKQNVIMFVGLQGSGKTTTCTKYAYYYQKKGWKVALVCADTFRAGAFDQLKQ 149

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A +    F  S   +D   ++ E     + +  +++I+DT+GR    + L   + ++  
Sbjct: 150 NATKVRVPFYGSYTEADPVQISQEGVNVFKKEAFEIIIVDTSGRHKQENDLFEEMKQVEA 209

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
            +K      P  ++ V+D++ GQ    Q   F        +I+TK+DG A+GGG +  V 
Sbjct: 210 AVK------PDDIVFVMDSSIGQACYDQALAFKKAVNVGSVIITKLDGHAKGGGALSAVA 263

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + P+ F+G GE  +DLE F A  F   + G  D
Sbjct: 264 ATESPIVFIGEGEHFDDLESFEASSFVRRLLGLGD 298


>gi|239813969|ref|YP_002942879.1| signal recognition particle protein [Variovorax paradoxus S110]
 gi|239800546|gb|ACS17613.1| signal recognition particle protein [Variovorax paradoxus S110]
          Length = 462

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QLK+   +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKMVTKQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S        +A  A   A+    DVL++DTAGRL  + +LM  I ++   L    
Sbjct: 157 AEWFPSTPDQKPLDIARAALDHAKRHFFDVLLVDTAGRLAIDEVLMTEIKQLHGALD--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+I+TK DG +RGG  + +     +P+
Sbjct: 214 ---PVETLFVVDAMQGQDAINTAKAFKEALPLTGIILTKTDGDSRGGAALSVRQVTGVPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G  E I+ LE F A+  +  I G  D
Sbjct: 271 KFAGTSEKIDGLEVFDAERHAGRILGMGD 299


>gi|256082003|ref|XP_002577253.1| signal recognition particle 54 kD protein [Schistosoma mansoni]
 gi|238662557|emb|CAZ33490.1| signal recognition particle 54 kD protein, putative [Schistosoma
           mansoni]
          Length = 538

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 6/195 (3%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +VI++VG+ G GKTT   KL+      G K  +   DTFR+ A DQLK  A +    F  
Sbjct: 102 NVIMLVGLQGCGKTTTATKLAYFYQRKGWKTCMICADTFRAGAFDQLKQNATKARIPFYG 161

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S   +D   +A +  ++   +K +++I+DT+GR      L     +M++V   ++P    
Sbjct: 162 SYTETDPVVIARDGVQKFVEEKFEIIIVDTSGRHRQEDSLFE---EMLQVSNAIEPD--- 215

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V+ VLDA+ GQ    Q   F A    + +I+TK+DG A+GGG +  V     P+ F+G 
Sbjct: 216 HVIYVLDASIGQACEAQASAFKAKVDVSSVIVTKLDGHAKGGGALSAVAATHSPITFIGT 275

Query: 292 GEGINDLEPFVAKDF 306
           GE + D E F  + F
Sbjct: 276 GEHVEDFEQFRVQPF 290


>gi|331000256|ref|ZP_08323940.1| signal recognition particle protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329572422|gb|EGG54075.1| signal recognition particle protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 464

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P +IL+ G+ G GKTT  GKL K + +   K V+  + D +R AAIDQL+  + + +
Sbjct: 101 TQPPAIILLAGLQGAGKTTTAGKLGKWLKEEKKKKVLTVSADVYRPAAIDQLQTVSQQAN 160

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S        +A +A + A+    DVLI+DTAGRL  +  +M  +  + + L    
Sbjct: 161 IDFFPSTPNEKPLDIARKALEYAKLHYYDVLIVDTAGRLAIDEQMMNEVSDLEKFLN--- 217

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P     V+DA  GQ+A+   + F      TG+I+TK+DG +RGG  + + +    P+
Sbjct: 218 ---PIETFFVVDAMVGQDAVNTAKAFGEKLPLTGVILTKVDGDSRGGAALSVRMVTGKPI 274

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+GVGE +N  + F  +  +  I G  D
Sbjct: 275 KFMGVGEKLNGFQRFDPQAMAGRILGMGD 303


>gi|160896956|ref|YP_001562538.1| signal recognition particle protein [Delftia acidovorans SPH-1]
 gi|160362540|gb|ABX34153.1| signal recognition particle protein [Delftia acidovorans SPH-1]
          Length = 464

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QLK    +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIERRKKKVLTVSGDVYRPAAIEQLKTVTAQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S        +A  A   A+    DVL++DTAGRL  + +LMA I  +   LK   
Sbjct: 157 AEWFPSTPDQKPHDIAVAALDYAKRHFFDVLLVDTAGRLAIDELLMAEIKDLHATLK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+
Sbjct: 214 ---PVETLFVVDAMQGQDAINTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQITGAPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GV E I+ LE F A   +  + G  D
Sbjct: 271 KFAGVSEKIDGLEVFDADRHAQRVLGMGD 299


>gi|24379497|ref|NP_721452.1| signal recognition particle protein subunit, Ffh [Streptococcus
           mutans UA159]
 gi|26007034|sp|Q54431|SRP54_STRMU RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|24377436|gb|AAN58758.1|AE014944_8 signal recognition particle protein subunit, Ffh [Streptococcus
           mutans UA159]
          Length = 516

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L+    ++   R+L +     V +E+   L+ +D+ + V ++ ++ +  +   
Sbjct: 3   FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+++  V+E +  +L   +       S  P +I++VG+ G GKTT  GKL
Sbjct: 63  HEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIMMVGLQGAGKTTFAGKL 121

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + K+  +   + ++ A D +R AAIDQLK    + +           A  +  +   QA+
Sbjct: 122 ANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             + D ++IDTAGRL  +  LM  +    R +K L    P+ +L V+D+  GQ A     
Sbjct: 182 ENRNDYVLIDTAGRLQIDEKLMTEL----RDIKAL--ANPNEILLVVDSMIGQEAANVAR 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ I
Sbjct: 236 EFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|305665094|ref|YP_003861381.1| signal recognition particle protein [Maribacter sp. HTCC2170]
 gi|88709846|gb|EAR02078.1| signal recognition particle protein [Maribacter sp. HTCC2170]
          Length = 446

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 108/211 (51%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           D S  P VIL+ G+ G GKTT  GKL+  + +    K +L A D +R AAIDQL +  D+
Sbjct: 94  DLSGTPSVILMSGLQGSGKTTFSGKLANFLKTKKSKKPLLVACDVYRPAAIDQLHVVGDQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +       +D  +LA      A+A   +V+IIDTAGRL  +  +M  I  +   +K 
Sbjct: 154 IGIEVYSDRENNDPVSLAQAGVAHAKANGHNVVIIDTAGRLAVDEKMMTEISNIHGAVK- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+D+ TGQ+A+   + F+ V    G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDVLNFDGVILTKLDGDTRGGAAISIKSVVDK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +  ++ F     +  I G  D
Sbjct: 268 PIKFIGTGEKMEAIDVFHPSRMAERILGMGD 298


>gi|264680208|ref|YP_003280118.1| signal recognition particle protein [Comamonas testosteroni CNB-2]
 gi|299533984|ref|ZP_07047336.1| signal recognition particle protein [Comamonas testosteroni S44]
 gi|262210724|gb|ACY34822.1| signal recognition particle protein [Comamonas testosteroni CNB-2]
 gi|298717893|gb|EFI58898.1| signal recognition particle protein [Comamonas testosteroni S44]
          Length = 463

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QLK    +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S        +A  A   A+    DVL++DTAGRL  + +LMA I  +   LK   
Sbjct: 157 AEWFPSTPDQKPHDIAVAAIDYAKKHFFDVLLVDTAGRLAIDELLMAEIKDLHATLK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+
Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQITGAPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GV E I+ LE F A   +  + G  D
Sbjct: 271 KFAGVSEKIDGLEVFDADRHAQRVLGMGD 299


>gi|320457371|dbj|BAJ67992.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 553

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 155/324 (47%), Gaps = 36/324 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +    ++  +   
Sbjct: 7   FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALG 66

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 67  TEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 125

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + ++G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 126 LGYWLKESGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQT 185

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A ++ + A+ K  D +IIDTAGRL  +  LM    +  R ++  D   P+ +L
Sbjct: 186 SGDPVKVARDSIELARQKLYDTVIIDTAGRLGVDEELM----RQARDIR--DAVQPNEIL 239

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A+R  + F      TG++++K+DG ARGG  + +      P+ F   GEG
Sbjct: 240 FVIDAMIGQDAVRTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNGEG 299

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           + D E F     ++ I   LD G+
Sbjct: 300 LKDFEVFHPDRMASRI---LDMGD 320


>gi|262341219|ref|YP_003284074.1| signal recognition particle protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272556|gb|ACY40464.1| signal recognition particle protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 452

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 131/263 (49%), Gaps = 19/263 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSELIHKMLMP 98
           +E+   LI +D+   +A+  +  +  K   K V         + +++YD  EL+   L+ 
Sbjct: 32  KEIVRALIDADVNYKIAKDFIRRVKEKSIGKKVLTSLNPKQLITKIVYD--ELV---LLM 86

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             K    + S  P +IL+ G+ G GKT+   KL+  +       +L A D  R AAIDQL
Sbjct: 87  GGKSIEMNLSKDPSIILICGLQGSGKTSFSSKLAFFLRKKNKNPLLVAADIHRPAAIDQL 146

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K  A++ +      +   +   +  ++   +   K +V+IIDTAGRL  + I+M  I K+
Sbjct: 147 KFIAEKVNIPIFYLKNSKNIIEILDKSVIYSFKNKNNVIIIDTAGRLAIDQIMMEEIVKI 206

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            +  K      P  +L V+DA TGQ+A+   + F  +    G++MTK+DG +RGG  I +
Sbjct: 207 HQHSK------PDEILFVVDAMTGQDAINTAQSFSKILNFDGIVMTKLDGDSRGGAAITM 260

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
                 P+ F+  GE I DLE F
Sbjct: 261 SSAVGKPIKFISNGEKIEDLEIF 283


>gi|313836655|gb|EFS74369.1| signal recognition particle protein [Propionibacterium acnes
           HL037PA2]
 gi|314928163|gb|EFS91994.1| signal recognition particle protein [Propionibacterium acnes
           HL044PA1]
 gi|314972161|gb|EFT16258.1| signal recognition particle protein [Propionibacterium acnes
           HL037PA3]
 gi|328907975|gb|EGG27735.1| signal recognition particle protein [Propionibacterium sp. P08]
          Length = 528

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    ++   L+ +D+ ++V ++ V  +  + + +++S      Q+++  V+E + ++L 
Sbjct: 28  DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +   + P V+++ G+ G GKTT+ GKL++   + G   +LAA D  R  A+ Q
Sbjct: 88  GQTRTVRF-AKNPPTVVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        E G+   D   +A +A  +A+ K  DV+IIDTAGRL  ++ +MA 
Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPIQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +           P   L V+DA  GQ+A+     F    G  G+++TK+DG ARGG 
Sbjct: 207 AADIKAATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFNGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GEG+ D + F     ++ I   LD G+
Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301


>gi|291295393|ref|YP_003506791.1| signal recognition particle protein [Meiothermus ruber DSM 1279]
 gi|290470352|gb|ADD27771.1| signal recognition particle protein [Meiothermus ruber DSM 1279]
          Length = 434

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK-PFNWD 106
           L+ +D+   VA+  V ++  K   + V       +++L  V E + +ML   +K P    
Sbjct: 38  LLEADVNFEVAKNFVNKVQEKTLGQAVLESLTPAEQILSVVYEELVEMLGGEAKQPL--- 94

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
             +  ++  +VG+ G GKTT  GKL+      G + +L A DT R AA +QL+I  ++  
Sbjct: 95  LKNEGNLWFMVGLQGSGKTTTSGKLAHFYKSKGRRPLLVAADTQRPAAREQLRILGEKIG 154

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +    G           +       D++I+DTAGRL  +  LM  + ++ +V+    
Sbjct: 155 VPVLEVADGERPETTRARLQQHLTFDYRDLVIVDTAGRLQIDQALMDELAQLKQVM---- 210

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D+ TGQ AL   + F    G TGLI+TK+DG ARGG  +        P+
Sbjct: 211 --GPSETLLVVDSMTGQEALNVSKAFDERIGVTGLILTKLDGDARGGAALSARYVTGKPI 268

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           YF GV E +  LEPF     +  I G  D
Sbjct: 269 YFAGVSEKVEGLEPFYPDRLAQRILGMGD 297


>gi|213691304|ref|YP_002321890.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522765|gb|ACJ51512.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 550

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 155/324 (47%), Gaps = 36/324 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +    ++  +   
Sbjct: 4   FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 64  TEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + ++G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 123 LGYWLKESGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQT 182

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A ++ + A+ K  D +IIDTAGRL  +  LM    +  R ++  D   P+ +L
Sbjct: 183 SGDPVKVARDSIELARQKLYDTVIIDTAGRLGVDEELM----RQARDIR--DAVQPNEIL 236

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A+R  + F      TG++++K+DG ARGG  + +      P+ F   GEG
Sbjct: 237 FVIDAMIGQDAVRTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNGEG 296

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           + D E F     ++ I   LD G+
Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317


>gi|121595918|ref|YP_987814.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidovorax
           sp. JS42]
 gi|120607998|gb|ABM43738.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidovorax
           sp. JS42]
          Length = 459

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QLK    +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S        +A  A   A+    DVL++DTAGRL  + +LM  I  +  VL    
Sbjct: 157 AEWFPSTPDQKPRDIALGALDYAKKHFFDVLLVDTAGRLAIDEVLMQEIKDLHAVLN--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+
Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GV E I+ LE F A+  +  I G  D
Sbjct: 271 KFAGVSEKIDGLEVFDAERHAGRILGMGD 299


>gi|21223941|ref|NP_629720.1| signal recognition particle protein [Streptomyces coelicolor A3(2)]
 gi|3191979|emb|CAA19378.1| signal recognition particle protein [Streptomyces coelicolor A3(2)]
          Length = 550

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 143/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++++  +    +VS      Q+VL  V+E +  +L 
Sbjct: 62  DATAREIRIALLEADVALPVVRAFIKKVKERSLGAEVSKALNPAQQVLKIVNEELVGILG 121

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL   + + G   +L A D  R  A++Q
Sbjct: 122 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGHWLKEQGHSPLLVACDLQRPNAVNQ 180

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+AK  D++I+DTAGRL  +  LM  
Sbjct: 181 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFAKAKVHDLVIVDTAGRLGIDQELMQQ 240

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 241 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 294

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GE ++D + F     ++ I   LD G+
Sbjct: 295 ALSIASVTGKPIMFASNGEKLDDFDAFHPDRMASRI---LDMGD 335


>gi|302920457|ref|XP_003053074.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734014|gb|EEU47361.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 658

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 111/210 (52%), Gaps = 22/210 (10%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+V+ +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++QL +   R   + 
Sbjct: 446 RPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQLAVHV-RNLKEL 504

Query: 170 VCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
              E           G DAA +A +A   A  +  DV++IDTAGR HN+  LM+ + K  
Sbjct: 505 TAREGGRVELYQKGYGKDAATVAKDAVTHAAQEGFDVVLIDTAGRRHNDQRLMSSLEKFA 564

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT----GLIMTKMDGTARG-GG 274
           +  +      P  +L V +A  G +++ Q   F+A  G      G I++K D      G 
Sbjct: 565 KFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGAVRTLDGFIISKCDTVGDMVGT 618

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           L+ +V    +PV F+GVG+  +DL  F  K
Sbjct: 619 LVSLVHATNVPVLFVGVGQHYSDLRNFSVK 648


>gi|242373529|ref|ZP_04819103.1| signal recognition particle protein Ffh [Staphylococcus epidermidis
           M23864:W1]
 gi|242348892|gb|EES40494.1| signal recognition particle protein Ffh [Staphylococcus epidermidis
           M23864:W1]
          Length = 455

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  M      K ML AGD +R AAIDQL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQIDIPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K      
Sbjct: 161 YSEGDQVPPQQIVENALKHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ V+DA TGQ+A+   + F      +G+ +TK+DG  RGG  + I    + P+ F+
Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDDQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+ E ++ LE F  +  ++ I G  D
Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300


>gi|221065175|ref|ZP_03541280.1| signal recognition particle protein [Comamonas testosteroni KF-1]
 gi|220710198|gb|EED65566.1| signal recognition particle protein [Comamonas testosteroni KF-1]
          Length = 462

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QLK    +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S        +A  A   A+    DVL++DTAGRL  + +LMA I  +   LK   
Sbjct: 157 AEWFPSTPDQKPHDIAVAAIDYAKKHFFDVLLVDTAGRLAIDELLMAEIKDLHATLK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+
Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQITGAPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GV E I+ LE F A   +  + G  D
Sbjct: 271 KFAGVSEKIDGLEVFDADRHAQRVLGMGD 299


>gi|312865260|ref|ZP_07725488.1| signal recognition particle protein [Streptococcus downei F0415]
 gi|311099371|gb|EFQ57587.1| signal recognition particle protein [Streptococcus downei F0415]
          Length = 524

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I+++G+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    + S   
Sbjct: 101 PTIIMMIGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQISVPV 160

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              ++G+D  A  +      QA+  + D ++IDTAGRL  +  LM    + +R +K L  
Sbjct: 161 F--DMGTDVPATEIVKNGLAQARENRNDYVLIDTAGRLQIDETLM----QELRDVKEL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+D+  GQ A      F+     TG+++TK+DG  RGG  + +      P+ 
Sbjct: 213 AQPNEILLVVDSMIGQEAANVAREFNQQLDITGVVLTKIDGDTRGGAALSVRQITGRPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|327460366|gb|EGF06703.1| signal recognition particle protein [Streptococcus sanguinis
           SK1057]
          Length = 524

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   ++++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARLLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEIPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|269958646|ref|YP_003328433.1| signal recognition particle protein [Anaplasma centrale str.
           Israel]
 gi|269848475|gb|ACZ49119.1| signal recognition particle protein [Anaplasma centrale str.
           Israel]
          Length = 451

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 156/290 (53%), Gaps = 15/290 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L KG AS   KL  G    IS +  D  V E++   L+ +D+ + V ++ + ++ +K   
Sbjct: 5   LAKGIASAVQKL--GGRREISDKDFD-LVLEDVTQALLDADVNLMVVEQFIGDVKSKIVG 61

Query: 77  KDVSVQRVLYD--VSELIHKMLMPL--SKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKL 131
            +V V+ VL +  + +L+ + L+ +  ++    D S + P  I++VG+ GVGKTT   K+
Sbjct: 62  GEV-VKGVLPEQMIIKLMEECLIEVLGNEKSGLDLSGKAPVAIMMVGLQGVGKTTNTVKV 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+  +  KV++A+ D +R AA +QL + A     D +    G     +A  A K+A+ 
Sbjct: 121 AFKLKKSEKKVLVASLDVYRPAAQEQLGVLAQGVGVDSLPIVEGELPLDIAKRAMKEAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRLH +  +   IG++  V K +   +P+  + V+D   GQ+A+  V  
Sbjct: 181 GGYDVVIVDTAGRLHIDQEM---IGELQLVKKEV---SPNETILVVDCMMGQDAVEVVRG 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           FH     TG I T+ DG +RGG ++ + +    P+ F+  GE   DL+ F
Sbjct: 235 FHDKLNLTGTIFTRADGDSRGGAILSMKMVSGCPIKFMSTGEKPEDLDDF 284


>gi|260907261|ref|ZP_05915583.1| signal recognition particle protein [Brevibacterium linens BL2]
          Length = 535

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 146/293 (49%), Gaps = 19/293 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     DG   E+   L+ +D+ + V +     +  +  +
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLSEADVDGTIREIRRALLDADVALPVVRAFTGRIRERALS 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+V+  V++ +  +L   ++  N+     P VI++ G+ G GKTT+ GKL
Sbjct: 62  EEVSGALNPGQQVVKVVNDELVGILGGETRRLNY-AKRPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +  +   G + ML A D  R  A++QL+I  +R  A     E G+   +   +A ++ + 
Sbjct: 121 AYWLKSEGHRPMLVAADLQRPNAVNQLEIVGERAGAFVYAPEPGNGVGNPVQVATDSLEV 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  DV+I+DTAGRL  +  LM     +   +       P  VL V+DA  GQ+A++ 
Sbjct: 181 AKAKLHDVVIVDTAGRLGIDEELMQQAADIRSAVN------PDEVLFVIDAMIGQDAVKT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            E F      TG++++K+DG +RGG  + +      P+ F   GE + + E F
Sbjct: 235 AEAFLEGVDFTGVVLSKLDGDSRGGAALSVAEVTGKPIMFASTGESMKEFEQF 287


>gi|261196279|ref|XP_002624543.1| signal sequence receptor alpha subunit [Ajellomyces dermatitidis
           SLH14081]
 gi|239587676|gb|EEQ70319.1| signal sequence receptor alpha subunit [Ajellomyces dermatitidis
           SLH14081]
 gi|239614635|gb|EEQ91622.1| signal sequence receptor alpha subunit [Ajellomyces dermatitidis
           ER-3]
 gi|327356628|gb|EGE85485.1| signal sequence receptor alpha subunit [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 650

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 137/276 (49%), Gaps = 33/276 (11%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMP 98
           RL DGV +EL      +       Q I   L   R A + S++++L   S L + + +  
Sbjct: 377 RLCDGVEKEL------TGKKTGNFQSIDSAL---RTAMESSLRKILTPTSSLDLLREIEA 427

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++ P +     RP+VI +VGVNGVGK+T + K+   +     +V++AA DTFRS A++QL
Sbjct: 428 VTSPSSTQKQRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVEQL 487

Query: 159 KIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           ++ A R   +    E            G DAA +A +A     A   DV++IDTAGR HN
Sbjct: 488 RVHA-RNLKELSARENVGHVELYEKGYGKDAANVAKDAVSYGAANNFDVILIDTAGRRHN 546

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH----AVAGTTGLIM 263
           +  LM+ + K  +  +      P  +  V +A  G +++ Q   F+    A  G  G I+
Sbjct: 547 DQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGAGRGLDGFII 600

Query: 264 TKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
           +K D      G L+ +V    IP+ FLGVG+   DL
Sbjct: 601 SKCDTVGDMVGTLVSMVHATGIPIVFLGVGQHYGDL 636


>gi|258647132|ref|ZP_05734601.1| signal recognition particle protein [Prevotella tannerae ATCC
           51259]
 gi|260853095|gb|EEX72964.1| signal recognition particle protein [Prevotella tannerae ATCC
           51259]
          Length = 452

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 23/284 (8%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHK 94
            V E L+D+   L+ +D+   VA+   +++  K        Q VL  V       +++H 
Sbjct: 26  NVAETLKDVRRALLDADVNYKVAKSFTDDVKEKALG-----QHVLTAVKPGQLLVKIVHD 80

Query: 95  MLMPLSKPFNWDFS--HRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFR 151
            L  L      DF+    P V+L+ G+ G GKTT+ GKL+  M +    + +L A D +R
Sbjct: 81  ELARLMGGTAADFNIEGHPAVVLMSGLQGSGKTTMSGKLALMMKTKKRRRPLLVACDVYR 140

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            AAIDQL    ++            D  ++A  A K+A+AK  D++I+DTAGRL  +  +
Sbjct: 141 PAAIDQLHTLGEQIDVPVYSERDNQDPVSIALNAIKEAKAKSYDLVIVDTAGRLAIDEKM 200

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  I  +   ++      P+  L V+D+ TGQ+A+   + F+      G+++TK+DG  R
Sbjct: 201 MTEIATIKEHIR------PNETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTR 254

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG  + I      P+ F+G GE +  L+ F  +  +  I G  D
Sbjct: 255 GGAALSIRTVVNKPIKFIGTGEKLEALDIFHPERMADRILGMGD 298


>gi|194866950|ref|XP_001971975.1| GG15264 [Drosophila erecta]
 gi|190653758|gb|EDV51001.1| GG15264 [Drosophila erecta]
          Length = 508

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 8/226 (3%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+ K++ P  KP+      + +V++ VG+ G GKTT   KL+        K  L   DT
Sbjct: 82  ELV-KLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ+K  A +    F  S    D   +A E     + +  +++I+DT+GR     
Sbjct: 140 FRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKREGFEMIIVDTSGRHKQEE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L         +L   +  +P +++ V+DAT GQ    Q + F        +I+TK+DG 
Sbjct: 200 SLFE------EMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299


>gi|209551321|ref|YP_002283238.1| signal recognition particle protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537077|gb|ACI57012.1| signal recognition particle protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 527

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT   K++ ++S    K V++A+ DT R AA +QL+    + S D 
Sbjct: 100 PVVVMMVGLQGSGKTTTSAKIAHRLSTRDKKKVLMASLDTRRPAAQEQLRQLGAQASIDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM    +M  + KR +PH 
Sbjct: 160 LPIISGQSPTDIAARAVQAARLGGHDVVILDTAGRTHIDEPLMV---EMADIKKRSNPH- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              +L V D+ TGQ+A+     F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 216 --EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE +++LE F  +  +  I G  D
Sbjct: 274 GVGEKMSELEEFHPRRIADRILGMGD 299


>gi|327282058|ref|XP_003225761.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           [Anolis carolinensis]
          Length = 649

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 144/297 (48%), Gaps = 41/297 (13%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSK 101
           D V E+++D LI  ++   +A ++ E +  K   K + +   V   V + + + L+ + +
Sbjct: 350 DPVLEKMKDHLIAKNVAAEIAVQLCESVAKKLEGKVMGTFTTVTSTVKQALQESLVQILQ 409

Query: 102 P----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           P           +     RP+VI   GVNGVGK+T + K+S  + + G  V++AA DTFR
Sbjct: 410 PQRRVDVLRDVMDAQRHRRPYVITFCGVNGVGKSTNLAKISFWLIENGFSVLIAACDTFR 469

Query: 152 SAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           + A++QL+    R +A                    G DAA +A EA   A+ +  DV++
Sbjct: 470 AGAVEQLRTHTRRLNALHPPENHSGRVMVQLYEKGYGKDAAGIAMEAILYARNQGFDVVL 529

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------ 252
           +DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F      
Sbjct: 530 VDTAGRMQDNAPLMTALAKLIAV------NTPDLVLFVGEALVGNEAVDQLVKFNKALAD 583

Query: 253 HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    AK
Sbjct: 584 HSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAK 640


>gi|187778958|ref|ZP_02995431.1| hypothetical protein CLOSPO_02553 [Clostridium sporogenes ATCC
           15579]
 gi|187772583|gb|EDU36385.1| hypothetical protein CLOSPO_02553 [Clostridium sporogenes ATCC
           15579]
          Length = 449

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 147/287 (51%), Gaps = 17/287 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           +S + + + +RE ++  L+ +D+   V +  ++ +  K    +V       Q+V+  V+E
Sbjct: 23  LSEKDIKEAMRE-VKLALLEADVNYKVVKNFIKSVTEKCMGNEVLGSLTPGQQVIKIVNE 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + +++       N   S    VI++VG+ G GKTT+ GKL+  +     + +L A D +
Sbjct: 82  ELTELMGSTESTLNSSTSGLT-VIMLVGLQGAGKTTMAGKLALHLRKRNKRPLLVACDVY 140

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           R AAI QL++   +   D     +G   +   ++  A + A+  K +V+IIDTAGRLH +
Sbjct: 141 RPAAIKQLQVVGKQI--DIPVFTMGDKLSPVDISKAAIEHAKNNKNNVVIIDTAGRLHID 198

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  +  +   +       P  +L V+DA TGQ+A+     F+     +G+I+TK+DG
Sbjct: 199 EELMDELHNIKEEVN------PTEILLVVDAMTGQDAVNVANNFNDKLDISGVILTKLDG 252

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             RGG  + I      P+ F+G+GE +NDLE F     ++ I G  D
Sbjct: 253 DTRGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRILGMGD 299


>gi|172040476|ref|YP_001800190.1| signal recognition particle protein [Corynebacterium urealyticum
           DSM 7109]
 gi|171851780|emb|CAQ04756.1| signal recognition particle protein [Corynebacterium urealyticum
           DSM 7109]
          Length = 531

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 139/282 (49%), Gaps = 26/282 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  ++ +  +     VS      Q+V+  V E + ++L   ++      
Sbjct: 38  LLEADVSLPVVRAFIKRIKERANGVIVSEALNPAQQVIKIVDEELKEILGGETRRLTL-A 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
            H P VI++ G+ G GKTT+ GKL++ +S  G   ML A D  R  A+ QL+I  +R   
Sbjct: 97  KHPPTVIMLAGLQGAGKTTLAGKLARYLSKQGHTPMLVACDLQRPGAVQQLQIVGERAGV 156

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   TS +    E+G+   D   +A +  ++A   + D++IIDTAGRL  +  LM 
Sbjct: 157 TTFAPDPGTSLESHDHEMGTSTGDPVEVAEKGIEEAYRTQHDIVIIDTAGRLGIDETLMT 216

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              + IR     D   P  VL V+DA TGQ+A+   E F      TG+++TK+DG ARGG
Sbjct: 217 Q-ARNIR-----DAVEPDEVLFVIDAMTGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGG 270

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F   GE + D + F     ++ I G  D
Sbjct: 271 AALSIREVTGKPILFASTGEKLEDFDVFHPDRMASRILGMGD 312


>gi|256784958|ref|ZP_05523389.1| signal recognition particle protein [Streptomyces lividans TK24]
          Length = 516

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 136/267 (50%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++++  +    +VS      Q+VL  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIKKVKERSLGAEVSKALNPAQQVLKIVNEELVGILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL   + + G   +L A D  R  A++Q
Sbjct: 88  GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGHWLKEQGHSPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+AK  D++I+DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFAKAKVHDLVIVDTAGRLGIDQELMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I      P+ F   GE ++D + F
Sbjct: 261 ALSIASVTGKPIMFASNGEKLDDFDAF 287


>gi|289768849|ref|ZP_06528227.1| signal recognition particle protein [Streptomyces lividans TK24]
 gi|289699048|gb|EFD66477.1| signal recognition particle protein [Streptomyces lividans TK24]
          Length = 537

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 143/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++++  +    +VS      Q+VL  V+E +  +L 
Sbjct: 49  DATAREIRIALLEADVALPVVRAFIKKVKERSLGAEVSKALNPAQQVLKIVNEELVGILG 108

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL   + + G   +L A D  R  A++Q
Sbjct: 109 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGHWLKEQGHSPLLVACDLQRPNAVNQ 167

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+AK  D++I+DTAGRL  +  LM  
Sbjct: 168 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFAKAKVHDLVIVDTAGRLGIDQELMQQ 227

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 228 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 281

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GE ++D + F     ++ I   LD G+
Sbjct: 282 ALSIASVTGKPIMFASNGEKLDDFDAFHPDRMASRI---LDMGD 322


>gi|194290777|ref|YP_002006684.1| signal recognition particle (srp) component with 4.5S RNA (ffs)
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224612|emb|CAQ70623.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Cupriavidus taiwanensis LMG 19424]
          Length = 464

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT  GKL+K + +   K V+  + D +R AAI QLK  +++  A+F
Sbjct: 108 PAIILMAGLQGAGKTTTAGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGAEF 167

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+       +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK      
Sbjct: 168 FPSQPDQKPVDIARAAVDWARKHYHDVLIVDTAGRLGIDEAMMQEIAALHAELK------ 221

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+
Sbjct: 222 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGRPIKFV 281

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE ++ LEPF     +  I G  D
Sbjct: 282 GVGEKLDGLEPFYPDRMAQRILGMGD 307


>gi|182680251|ref|YP_001834397.1| signal recognition particle protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636134|gb|ACB96908.1| signal recognition particle protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 551

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 145/274 (52%), Gaps = 13/274 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V +  V+++  +    +V  SV   Q V+  V++++ + L    +P
Sbjct: 33  EVRRALLEADVSLDVVRSFVDKVRNRALGSNVVRSVTPGQMVVKIVNDVMIETLGKTVEP 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIW 161
            + D +  P  I++VG+ G GKTT   K++K+++D    KV++A+ D  R AA +QL + 
Sbjct: 93  IDLDAAP-PVGIMMVGLQGAGKTTTTAKIAKRLTDRFKRKVLMASLDVKRPAAQEQLAVL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             + +   +    G     +A  A + A+ +  DV+++DTAGR H +  LMA + ++   
Sbjct: 152 GKQINVATLPIIAGQTPVQIAQRAEQAARLQGFDVVLLDTAGRTHIDEALMAEMAEIKAA 211

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                  +PH +L V+D+ TGQ+A+   + F    G TG+++T++DG  RGG  + +   
Sbjct: 212 ------SSPHEILLVVDSLTGQDAVNLAKNFDDRVGITGIVLTRIDGDGRGGAALSMRAV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+  +G GE I+ LE F     +  I G  D
Sbjct: 266 TGKPIKLIGTGEKIDALEDFYPDRIANRILGMGD 299


>gi|237785768|ref|YP_002906473.1| signal recognition particle protein [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758680|gb|ACR17930.1| signal recognition particle protein [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 538

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 140/287 (48%), Gaps = 26/287 (9%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V +  ++ +  +    +VS      Q+V+  V+E +  +L   ++ 
Sbjct: 33  EIRLALLEADVSLPVVRAFIKNIKARATGAEVSEALNPAQQVVKIVNEELIGILGGETRR 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                 + P VI++ G+ G GKTT+ GKL+  +   G   ML A D  R  A+ QL+I  
Sbjct: 93  LQL-AKNPPTVIMLAGLQGAGKTTLAGKLAHHLKKQGHTPMLVACDLQRPGAVQQLEIVG 151

Query: 163 DR-----------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            R           T  D V  E+G    D   +A    ++AQ  K DV+IIDTAGRL  +
Sbjct: 152 QRADVPTFAPDPGTRTDTVEHEMGQSHGDPVGVATAGIEEAQRTKHDVVIIDTAGRLGID 211

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
            +LM    K  R ++  D   P  VL V+D+  GQ+A+   + F      TG+++TK+DG
Sbjct: 212 EVLM----KQARDIR--DATNPDEVLFVIDSMIGQDAVHTADAFREGVDFTGVVLTKLDG 265

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            ARGG  + I      P+ ++  GE ++D + F     +  I G  D
Sbjct: 266 DARGGAALSIREVTGKPILYVSTGEKLDDFDVFHPDRMANRILGMGD 312


>gi|194364928|ref|YP_002027538.1| signal recognition particle protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194347732|gb|ACF50855.1| signal recognition particle protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 458

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 146/294 (49%), Gaps = 23/294 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   I  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELTAVMGAEASDLNLNVPA-PAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QLK  A++    F  S       A+   A   A+
Sbjct: 121 AKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
              VDVL++DTAGRL  +  +MA I  +         HA   P   L V+DA TGQ+A  
Sbjct: 181 KSFVDVLLVDTAGRLAIDEAMMAEIKAL---------HAAVNPAETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             + F      TG+++TK DG ARGG  + +      P+ F+GV E    L+ F
Sbjct: 232 TAKAFGDALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVF 285


>gi|315502425|ref|YP_004081312.1| signal recognition particle protein [Micromonospora sp. L5]
 gi|315409044|gb|ADU07161.1| signal recognition particle protein [Micromonospora sp. L5]
          Length = 517

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 138/281 (49%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+++  V+E +  +L 
Sbjct: 28  DATAREIRMALLEADVALPVVKGFIANVKERARGAEVSQALNPAQQIVKIVNEELINILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              +   +   H P VI++ G+ G GKTT+ GKL++ +   G + +L A D  R  A+ Q
Sbjct: 88  GEGRRLQF-AKHPPTVIMLAGLQGSGKTTLAGKLARWLKSQGHQPLLVAADLQRPNAVGQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++   R   +      G+   D   +A ++ + A+    D++I+DTAGRL  ++ +M  
Sbjct: 147 LQVLGGRAGVEVYAPAPGNGVGDPVQVARDSIEHARRAARDIVIVDTAGRLGIDTEMMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D   P  V+ V+DA  GQ+A+R  E F    G TG++++K+DG ARGG 
Sbjct: 207 AAN-IR-----DAVQPDEVIFVIDAMVGQDAVRTAEAFRDGVGITGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F   GE + D + F     ++ I G  D
Sbjct: 261 ALSVREVTGQPILFASTGEKLEDFDVFHPDRMASRILGMGD 301


>gi|225419757|ref|ZP_03762060.1| hypothetical protein CLOSTASPAR_06095 [Clostridium asparagiforme
           DSM 15981]
 gi|225041594|gb|EEG51840.1| hypothetical protein CLOSTASPAR_06095 [Clostridium asparagiforme
           DSM 15981]
          Length = 459

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 144/275 (52%), Gaps = 12/275 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101
           +E++  L+ +D+   V ++ +  +  +    +V     + Q V+  V+E + K++   + 
Sbjct: 33  KEVKMALLEADVSFKVVKQFINSIQDQAVGAEVFGKLDAGQTVIKIVNEELVKLMGSETT 92

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKI 160
             +    +   VI++ G+ G GKTT   KL+ ++ +  G K +L A D +R AAI QL+I
Sbjct: 93  EVDLKPGNEITVIMMTGLQGAGKTTTTAKLAAQLKAKKGRKPLLVACDVYRPAAIKQLQI 152

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
             ++                +A  A + A    ++++I+DTAGRLH +  +M    +++ 
Sbjct: 153 NGEKVGVPVFAMGDKHKPVDIAKAAMEHAAKNGMNLVILDTAGRLHIDEAMM---DELVE 209

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           +  +LD H   ++L V+DA TGQ+A+   E F+   G  G+++TK+DG  RGG  + I  
Sbjct: 210 IKDQLDVH--QTIL-VVDAMTGQDAVNVSETFNNKIGIDGVVLTKLDGDTRGGAALSIRA 266

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+ ++G+GE ++DLE F     ++ I G  D
Sbjct: 267 VTGKPILYVGMGEKLSDLEQFYPDRMASRILGMGD 301


>gi|283953925|ref|ZP_06371454.1| LOW QUALITY PROTEIN: signal recognition particle protein
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794530|gb|EFC33270.1| LOW QUALITY PROTEIN: signal recognition particle protein
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 445

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 136/271 (50%), Gaps = 15/271 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           E L+  L+++D    V  K+ +ELLT          +  Q+ L  +   +  +L    K 
Sbjct: 30  ETLKKTLLKAD----VHHKVTKELLTLIEEDVKQNGIGQQQFLNAIKVNLENILSINGKN 85

Query: 103 FNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
             + F+ +P  V+L+ G+ G GKTT   KL+  +     KV++AA D  R AA++QL+  
Sbjct: 86  QGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQL 145

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                 +    E   D   +A EA ++A++  VDVL++DTAGRL  +  LM  +  +  V
Sbjct: 146 CQANGIELFFIENEKDPIRVAKEALEKAKSSMVDVLLVDTAGRLAIDDTLMNELKAVKDV 205

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           L       P  +  V DA +GQ+ ++    F+   G +G+I++K D   +GG  + I   
Sbjct: 206 LN------PDEIFYVADAMSGQDGVKTAANFNEALGISGVILSKFDADTKGGVALGIAKQ 259

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             IP+ F+GVGE + DLE F+     + I G
Sbjct: 260 IGIPLRFIGVGEKVADLEVFIPDRIVSRIMG 290


>gi|50914250|ref|YP_060222.1| signal recognition particle subunit FFH [Streptococcus pyogenes
           MGAS10394]
 gi|50903324|gb|AAT87039.1| signal recognition particle subunit FFH [Streptococcus pyogenes
           MGAS10394]
          Length = 522

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 159/312 (50%), Gaps = 23/312 (7%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72
           +T  F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  
Sbjct: 1   MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTT 126
           +    ++       +++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT
Sbjct: 61  RAIGHEIIDTLDPTKQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTT 118

Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAY 183
             GKL+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  
Sbjct: 119 FAGKLANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVR 176

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  +QA+    D ++IDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ
Sbjct: 177 KGLEQARENHNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQ 230

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            A      F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F  
Sbjct: 231 EAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGERITDIETFHP 290

Query: 304 KDFSAVITGCLD 315
              S+ I G  D
Sbjct: 291 DRMSSRILGMGD 302


>gi|28493429|ref|NP_787590.1| signal recognition particle protein [Tropheryma whipplei str.
           Twist]
 gi|28476470|gb|AAO44559.1| signal recognition particle protein [Tropheryma whipplei str.
           Twist]
          Length = 448

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 139/272 (51%), Gaps = 31/272 (11%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELI-- 92
           D V  E+   L+ SD+   +AQ  V  +  +  +++          V +++++  EL+  
Sbjct: 30  DVVLSEVYKTLLDSDVSFEIAQAFVHRVRDRSMSQESLRAINPHKRVTQIVWE--ELVDL 87

Query: 93  ---HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
               K  +  S+ F       P +I++VG+ G GKT+  GKL+K + + G    L A D 
Sbjct: 88  LGHQKTALKFSRTF-------PTIIMLVGLQGSGKTSFAGKLAKWLMERGHTAALGACDL 140

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            R AA  QL+  A++  A  +  + G+   A+     K A+ K+  VLIIDTAGR++ +S
Sbjct: 141 QRPAAASQLQAVAEQAGASVLIPKSGNALDAVKT-VVKTAREKQFSVLIIDTAGRMNADS 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +M  + ++ R+ K      PH  L V+D+ TGQ AL    +F      TG++M+K+D  
Sbjct: 200 DMMDQLSEIDRLAK------PHQTLLVVDSATGQEALNITRVFCQHLSVTGVVMSKLDSD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + G  +   V+   P+ F  +GEG++DLE F
Sbjct: 254 VKAGAALS--VSSLRPIIFSCIGEGVDDLEQF 283


>gi|304320471|ref|YP_003854114.1| signal recognition particle protein [Parvularcula bermudensis
           HTCC2503]
 gi|303299373|gb|ADM08972.1| signal recognition particle protein [Parvularcula bermudensis
           HTCC2503]
          Length = 496

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 143/270 (52%), Gaps = 13/270 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V ++  +   ++V  SV   Q+V+  V +++   L         D 
Sbjct: 38  LLEADVALPVARDFVGKVKERAIGQEVLRSVTPGQQVVKIVHDVLVDTLGGGDNAHELDL 97

Query: 108 SHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRT 165
           +  P   IL+VG+ G GKTT   KL+K++ +   K V++A+ DT R AA++QLK+  ++ 
Sbjct: 98  TKAPPSAILMVGLQGSGKTTTSAKLAKRLKEKDRKRVLMASLDTRRPAAMEQLKVLGEQA 157

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +    G  A  +A  A + A+    D++I+DTAGRL  +  LMA + K I      
Sbjct: 158 DVPTLPIVPGQSAVQIAGRAMEAARLGGHDIVILDTAGRLSIDEELMAEV-KQIHT---- 212

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              +P   L VLD+ TGQ+A++  E F A    +G+++T++DG  RGG  + +      P
Sbjct: 213 -KTSPVETLLVLDSLTGQDAVQTAERFKARVPVSGVVLTRLDGDGRGGAALSMRSVTGAP 271

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F GVGE ++ L+ F  +  +  I G  D
Sbjct: 272 IKFAGVGEKLDALDVFDPERMAGRILGMGD 301


>gi|306823684|ref|ZP_07457059.1| signal recognition particle protein [Bifidobacterium dentium ATCC
           27679]
 gi|309803035|ref|ZP_07697136.1| signal recognition particle protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553391|gb|EFM41303.1| signal recognition particle protein [Bifidobacterium dentium ATCC
           27679]
 gi|308220502|gb|EFO76813.1| signal recognition particle protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 547

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 153/324 (47%), Gaps = 36/324 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 64  TEVSQALNPAQQVVKIVNEELTDVLGAGMDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D+G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSAGGEAVASPGLT 182

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A ++   A+ K  D +IIDTAGRL  +  LM    +  R ++  D   P+ +L
Sbjct: 183 TGDPVKVARDSVAFARQKLYDTVIIDTAGRLGVDEELM----RQARDIR--DAVQPNEIL 236

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG
Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           + D E F     ++ I   LD G+
Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317


>gi|302865880|ref|YP_003834517.1| signal recognition particle protein [Micromonospora aurantiaca ATCC
           27029]
 gi|302568739|gb|ADL44941.1| signal recognition particle protein [Micromonospora aurantiaca ATCC
           27029]
          Length = 517

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 138/281 (49%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+++  V+E +  +L 
Sbjct: 28  DATAREIRMALLEADVALPVVKGFIANVKERARGAEVSQALNPAQQIVKIVNEELINILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              +   +   H P VI++ G+ G GKTT+ GKL++ +   G + +L A D  R  A+ Q
Sbjct: 88  GEGRRLQF-AKHPPTVIMLAGLQGSGKTTLAGKLARWLKSQGHQPLLVAADLQRPNAVGQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++   R   +      G+   D   +A ++ + A+    D++I+DTAGRL  ++ +M  
Sbjct: 147 LQVLGGRAGVEVYAPAPGNGVGDPVQVARDSIEHARRAARDIVIVDTAGRLGIDTEMMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D   P  V+ V+DA  GQ+A+R  E F    G TG++++K+DG ARGG 
Sbjct: 207 AAN-IR-----DAVQPDEVIFVIDAMVGQDAVRTAEAFRDGVGITGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F   GE + D + F     ++ I G  D
Sbjct: 261 ALSVREVTGQPILFASTGEKLEDFDVFHPDRMASRILGMGD 301


>gi|224024147|ref|ZP_03642513.1| hypothetical protein BACCOPRO_00869 [Bacteroides coprophilus DSM
           18228]
 gi|224017369|gb|EEF75381.1| hypothetical protein BACCOPRO_00869 [Bacteroides coprophilus DSM
           18228]
          Length = 443

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 133/265 (50%), Gaps = 13/265 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRRALLDADVNYKVAKNFTDTVKEKALGQNVLTAVKPSQLMVKIVHDELTKL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAID 156
                   +  +RP VIL+ G+ G GKTT  GKL++ +      K +L A D +R AAI+
Sbjct: 86  MGGDTAEIELKNRPAVILMSGLQGSGKTTFSGKLARMLKMKKNRKPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK+   +            +   +A  A ++A+AK  D++I+DTAGRL  +  +M  I 
Sbjct: 146 QLKVLGQQVEVPVYSEPESKNPVQIALNAIQEAKAKGYDLVIVDTAGRLAIDEQMMNEIE 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +   +       P   L V+DA TGQ+A+     F+      G+++TK+DG  RGG  +
Sbjct: 206 AIKNAIN------PDETLFVVDAMTGQDAVNTAREFNERLDFNGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I      P+ F+G GE ++ ++ F
Sbjct: 260 SIRTVVNKPIKFVGTGEKLDAVDQF 284


>gi|170758261|ref|YP_001787761.1| signal recognition particle protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405250|gb|ACA53661.1| signal recognition particle protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 449

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 144/285 (50%), Gaps = 13/285 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           +S + + + +RE ++  L+ +D+   V +  ++ +  K    +V       Q+V+  V+E
Sbjct: 23  LSEKDIKEAMRE-VKLALLEADVNYKVVKNFIKSVTEKCMGNEVLGSLTPGQQVIKIVNE 81

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + +++       N   S    VI++VG+ G GKTT+ GKL+  +     + +L A D +
Sbjct: 82  ELTELMGSTESTLNSSTSGL-TVIMLVGLQGAGKTTMAGKLALHLRKRNKRPLLVACDVY 140

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI QL++   +            +   ++  A + A+  K +V+IIDTAGRLH +  
Sbjct: 141 RPAAIKQLQVVGKQIDIPVFTMGDKLNPVDISKAAIEHAKNNKNNVVIIDTAGRLHIDEE 200

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +  +   +       P  +L V+DA TGQ+A+     F+     +G+I+TK+DG  
Sbjct: 201 LMDELHNIKGEVN------PSEILLVVDAMTGQDAVNVANNFNDKLDISGVILTKLDGDT 254

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+G+GE +NDLE F     ++ I G  D
Sbjct: 255 RGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRILGMGD 299


>gi|332521595|ref|ZP_08398048.1| signal recognition particle protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042684|gb|EGI78884.1| signal recognition particle protein [Lacinutrix algicola 5H-3-7-4]
          Length = 442

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 108/211 (51%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           + S  P VIL+ G+ G GKTT  GKL+  + S    K +L A D +R AA+DQL +  D+
Sbjct: 94  NLSGTPTVILMSGLQGSGKTTFSGKLANFLKSKKTKKPLLVACDVYRPAAVDQLHVVGDQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              D    +  +D  A+A      A+    +V+IIDTAGRL  +  +M  I  +   +K 
Sbjct: 154 IKVDVYSDKGNNDPVAIAQAGIAHAKQNGHNVVIIDTAGRLAVDEAMMTEISNIHTAIK- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+D+ TGQ+A+   + F+ V    G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDVLNFDGVILTKLDGDTRGGAAISIKSVVNK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +  ++ F     +  I G  D
Sbjct: 268 PIKFIGTGEKMEAIDIFYPSRMADRILGMGD 298


>gi|271963361|ref|YP_003337557.1| signal recognition particle subunit FFH/SRP54 (SRP54)
           [Streptosporangium roseum DSM 43021]
 gi|270506536|gb|ACZ84814.1| signal recognition particle subunit FFH/SRP54 (SRP54)
           [Streptosporangium roseum DSM 43021]
          Length = 516

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 25/311 (8%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT  F+S   K +    DI       D    E+   L+ +D+ + V +  V ++  +  
Sbjct: 8   RLTSVFSSLRSKGRLSEADI-------DATCREIRIALLEADVALPVVKTFVAQVKERAR 60

Query: 76  AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +VS      Q+V+  V++ + ++L   ++   +   + P VI++ G+ G GKTT+ GK
Sbjct: 61  GVEVSQALNPAQQVVKIVNDELIEILGGETRRLRY-AKNPPTVIMLAGLQGAGKTTLAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L++ + D     ML A D  R  A+ QL++ A+R        E G+   D   +A ++  
Sbjct: 120 LARWLRDQNHAPMLVAADLQRPNAVQQLQVMAERAGVAVYAPEPGNGVGDPIEVARQSID 179

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ ++ D++IIDTAGRL  +  LM      IR     D  +P  VL V+DA  GQ+A+ 
Sbjct: 180 HARRQQHDIVIIDTAGRLGIDQELMKQAAD-IR-----DAVSPDEVLFVVDAMIGQDAVS 233

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F    G  G+++TK+DG ARGG  + +      P+ F   GE + D + F     +
Sbjct: 234 TAQAFMEGVGFDGVVLTKLDGDARGGAALSVRHITGKPIMFASTGEKLEDFDAFHPDRMA 293

Query: 308 AVITGCLDYGE 318
           + I   LD G+
Sbjct: 294 SRI---LDMGD 301


>gi|269219645|ref|ZP_06163499.1| signal recognition particle protein [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269210887|gb|EEZ77227.1| signal recognition particle protein [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 520

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 115/220 (52%), Gaps = 19/220 (8%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           D S RP VI++ G+ G GKTT+ GKL + + ++   KV+L A D  R  A++QL++   +
Sbjct: 94  DLSRRPAVIMLAGLQGAGKTTLAGKLGRWLRTERNRKVLLVASDLQRPNAVNQLQVVGGQ 153

Query: 165 TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
              D    E G+   D  A+A     +A+    DV+++DTAGRL  +  +M         
Sbjct: 154 AGVDVWAPEPGNGVGDPVAVARSGLARAEEYGYDVVVVDTAGRLGIDEEMMR-------- 205

Query: 222 LKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            + +D  A   P+ VL V+DA  GQ+A+     F    G TG++++K+DG  RGG  + +
Sbjct: 206 -QAIDIRAAVNPNEVLFVIDAMIGQDAVATANAFQDGVGFTGVVVSKLDGDTRGGAALSV 264

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
                +P+ F   GE + D E F A   ++ I   LD G+
Sbjct: 265 RGVTGVPIMFASTGEKLTDFEQFHADRMASRI---LDMGD 301


>gi|223039520|ref|ZP_03609808.1| signal recognition particle protein [Campylobacter rectus RM3267]
 gi|222879316|gb|EEF14409.1| signal recognition particle protein [Campylobacter rectus RM3267]
          Length = 446

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 114/217 (52%), Gaps = 9/217 (4%)

Query: 99  LSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L+ P N  F   P     +L+ G+ G GKTT   KL+  +     KV++AA D  R AA+
Sbjct: 79  LTAPGNQGFVFAPVAPTTVLMAGLQGSGKTTTTIKLANYLKLRKKKVLVAACDLQRLAAV 138

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+   +    +    E  +D   +A +A  +A++   DVL++DTAGRL  + +LM  I
Sbjct: 139 EQLRQLCEANEIELFSIENETDPLNVAKQALAKAKSGLYDVLLVDTAGRLAIDEVLMKQI 198

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +   L+      PH +  V DA +GQ+ ++    F+     +G++++K D  ++GG  
Sbjct: 199 KDIKSALQ------PHEIFYVADAMSGQDGVKTASAFNDALKISGVVLSKFDSDSKGGVA 252

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           I I     IP+ F+G+GE + D+E F+ +   + I G
Sbjct: 253 IGIAKQLNIPLRFVGIGEKVGDMESFIPERIVSRIMG 289


>gi|332366910|gb|EGJ44651.1| signal recognition particle protein [Streptococcus sanguinis
           SK1059]
          Length = 534

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 111 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 168

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 169 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 224

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 225 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGIILTKIDGDTRGGAALSVRQITGKPIK 282

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 283 FTGTGEKITDIETFHPDRMSSRILGMGD 310


>gi|57866688|ref|YP_188386.1| signal recognition particle protein [Staphylococcus epidermidis
           RP62A]
 gi|242242520|ref|ZP_04796965.1| signal recognition particle protein [Staphylococcus epidermidis
           W23144]
 gi|57637346|gb|AAW54134.1| signal recognition particle protein [Staphylococcus epidermidis
           RP62A]
 gi|242234028|gb|EES36340.1| signal recognition particle protein [Staphylococcus epidermidis
           W23144]
          Length = 455

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  M      K +L AGD +R AAIDQL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAIDQLQTVGKQIDIPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K      
Sbjct: 161 YSEGDQVSPQQIVENALKHAKEEHLDFVIIDTAGRLHIDETLMNELQEVKEISK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ V+DA TGQ+A+   + F      +G+ +TK+DG  RGG  + I    + P+ F+
Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDEQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+ E ++ LE F  +  ++ I G  D
Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300


>gi|288957356|ref|YP_003447697.1| signal recognition particle, subunit SRP54 [Azospirillum sp. B510]
 gi|288909664|dbj|BAI71153.1| signal recognition particle, subunit SRP54 [Azospirillum sp. B510]
          Length = 461

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 144/269 (53%), Gaps = 14/269 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V ++ V ++  +   ++V  SV   Q+V+  V + + +ML   S+  N + 
Sbjct: 38  LLEADVALPVVKQFVTQVKERAVGQEVLKSVTPGQQVIKIVHDNLVEMLGEGSE-INLNA 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P  +L+VG+ G GKTT   K++ ++ +    KV++A+ D  R AA +QLK+  ++T 
Sbjct: 97  AA-PVPVLMVGLQGSGKTTSTAKIALRLKTKERKKVLMASLDVRRPAAQEQLKVLGEQTG 155

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +    G D  A+A  A +  + +  DV+++DTAGRL  +  LMA +  +       D
Sbjct: 156 VATLPIVPGQDPVAIAKRAIETGRLEGYDVVMLDTAGRLAIDEELMAEVAAV------RD 209

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V DA TGQ+A+     F+   G TG+++T++DG ARGG  + +      P+
Sbjct: 210 ATKPVETLLVADAMTGQDAVTVATNFNDKVGITGIVLTRIDGDARGGAALSMRQITGKPI 269

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             LGVGE I+ LEPF     +  I G  D
Sbjct: 270 KLLGVGEKIDALEPFHPDRIAGRILGMGD 298


>gi|220912974|ref|YP_002488283.1| signal recognition particle protein [Arthrobacter chlorophenolicus
           A6]
 gi|219859852|gb|ACL40194.1| signal recognition particle protein [Arthrobacter chlorophenolicus
           A6]
          Length = 527

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 151/317 (47%), Gaps = 29/317 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLTEADVDATVREIRRALLDADVAVPVVREFTSRVRERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E + ++L   ++       + P +I++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPSQQIVKIVNEELKEILGGETRRIRL-AKNGPTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS----------DAAAL 181
           SK +   G   ML A D  R  A+ QL++   R +        G+          D  A+
Sbjct: 121 SKWLKSQGHSPMLVACDLQRPNAVTQLQVVGQRANVPVFAPHPGATSTELEHPAGDPVAV 180

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A    ++A+ K  DV+I+DTAGRL  ++ +M    ++ R +       P+ VL V+D+  
Sbjct: 181 ARAGVEEARQKLHDVVIVDTAGRLGVDADMMEQARQIRRAI------VPNEVLFVIDSMI 234

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+A+     F      TG++++K+DG ARGG  + +      PV F   GEG++D E F
Sbjct: 235 GQDAVNTALAFDEGVNFTGIVLSKLDGDARGGAALSVSSVTGKPVMFASTGEGLDDFELF 294

Query: 302 VAKDFSAVITGCLDYGE 318
                ++ I   LD G+
Sbjct: 295 HPDRMASRI---LDMGD 308


>gi|197294839|ref|YP_001799380.1| Signal recognition particle GTPase [Candidatus Phytoplasma
           australiense]
 gi|171854166|emb|CAM12160.1| Signal recognition particle GTPase [Candidatus Phytoplasma
           australiense]
          Length = 453

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 149/293 (50%), Gaps = 26/293 (8%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS----- 89
           II SR +++ + E++   LI +D+ + V      EL++K+  K    Q VL  +      
Sbjct: 20  IIESRDIEN-IMEDIRLSLIEADVNIKVID-TFHELISKKSLK----QEVLKGLKPKEHI 73

Query: 90  -ELIHKMLMPLSKPFNWDF--SHRPHV--ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVM 143
            ++I++ L  +      D     +PH+  ++++G+ G GKTT  GKL+  +      KV+
Sbjct: 74  IKIINETLTQILGSTRSDLVVQPKPHLNAMMLIGLQGSGKTTTAGKLALWLRKKNHQKVL 133

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L A D +R  A++QLK+   +   D V S+  +    +     + AQ    D ++IDTAG
Sbjct: 134 LIACDIYRPGAVEQLKVIGRQIKID-VFSQGNTPVIEIVELGLQYAQKNGYDAIVIDTAG 192

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHS-VLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           RL  +        KM++ LK +      S VL V+DA TGQ + +  + FH   G TG+I
Sbjct: 193 RLTIDE-------KMMQELKEIKSKCDFSEVLLVIDALTGQQSAKNTQTFHQQVGATGVI 245

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +TKMD   +GG  + + V  ++P+ F+   E I+ LEPF     ++ + G  D
Sbjct: 246 LTKMDADTKGGASLSVRVMTELPLKFISSSESIDLLEPFNPDRMASRLLGMGD 298


>gi|332526543|ref|ZP_08402655.1| signal recognition particle protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332110811|gb|EGJ10988.1| signal recognition particle protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 440

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT   KL+K + +    KV+  + D +R AAIDQLK    +  A++
Sbjct: 85  PAVILMAGLQGAGKTTTTAKLAKHLIERRKKKVLTVSADVYRPAAIDQLKTVTKQAGAEW 144

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVL++DTAGRL  +  LMA I ++   LK      
Sbjct: 145 FPSAPSDKPRDIALAALDHAKRHYFDVLLVDTAGRLAIDEALMAEIRELHATLK------ 198

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F      +G+++TK+DG +RGG  + +      P+ F 
Sbjct: 199 PVETLFVVDAMQGQDAINTAKAFKEALPLSGIVLTKLDGDSRGGAALSVRQVAGAPIKFA 258

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E I+ LE F A+  +  + G  D
Sbjct: 259 GVSEKIDGLEVFDAERHAGRVLGMGD 284


>gi|17539958|ref|NP_501507.1| hypothetical protein F21D5.7 [Caenorhabditis elegans]
 gi|3876111|emb|CAA91040.1| C. elegans protein F21D5.7, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|3876124|emb|CAA92301.1| C. elegans protein F21D5.7, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 496

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 146/300 (48%), Gaps = 29/300 (9%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---------VEELL----TKRY 75
           K G + +I+   LD  ++E +   LI SD+ + + +++          EE++     +RY
Sbjct: 16  KLGQSTVINEGELDLMLKE-VCTALIESDVHIRLVKQLKDNVKKAINFEEIVGGANKRRY 74

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +Q+ +++  EL+ K++ P   PF      R +V + VG+ G GKTT   K++   
Sbjct: 75  -----IQKTVFN--ELL-KLVDPGVTPFTPTKGRR-NVFMFVGLQGSGKTTTCTKMAYYY 125

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++   +  +
Sbjct: 126 QRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFTQEGFE 185

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++I+DT+GR    + L     +M++V   +    P +V+ V+DA+ GQ    Q   F   
Sbjct: 186 IIIVDTSGRHKQEASLFE---EMLQVSNAV---TPDNVVFVMDASIGQACEAQARAFSQT 239

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +I+TK+D  A+GGG +  V   K PV F+G GE I+D E F  K F   + G  D
Sbjct: 240 VDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLLGMGD 299


>gi|237749054|ref|ZP_04579534.1| signal recognition particle [Oxalobacter formigenes OXCC13]
 gi|229380416|gb|EEO30507.1| signal recognition particle [Oxalobacter formigenes OXCC13]
          Length = 454

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 137/259 (52%), Gaps = 18/259 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS---------VQRVLYDVSELIHKMLMPLSKPF 103
           L+ +D+ + V +  + ++  K   K+V          V  V  ++S+++   L   +   
Sbjct: 38  LLEADVALPVVKSFIGKVREKAVGKEVMDSLSPGQALVGVVQQELSQIMGADLGEKASQL 97

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           N+  +  P +IL+ G+ GVGKTT +GKL++ +  +   KV+  + D +R AAI QL+  +
Sbjct: 98  NF-ATQPPAIILMAGLQGVGKTTTVGKLARYLKQEKKKKVLTVSTDVYRPAAIKQLETVS 156

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            ++  DF  S+  S+   +A  A   A+    DVLI+DTAGRL  +  +M  I  + + L
Sbjct: 157 GQSGVDFYGSD-ASEPIQIAKAALDHAKRHFYDVLIVDTAGRLGIDEQMMQEISGLHKTL 215

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                 +P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +    
Sbjct: 216 ------SPIETLFVVDAMLGQDAINVAKSFNDALPLTGIVLTKLDGDSRGGAALSVRHIT 269

Query: 283 KIPVYFLGVGEGINDLEPF 301
             PV F+GV E ++ LE F
Sbjct: 270 GKPVKFVGVSEKLDGLEEF 288


>gi|190573381|ref|YP_001971226.1| putative signal recognition protein (signal recognition
           particle-like) [Stenotrophomonas maltophilia K279a]
 gi|254521454|ref|ZP_05133509.1| signal recognition particle protein [Stenotrophomonas sp. SKA14]
 gi|190011303|emb|CAQ44916.1| putative signal recognition protein (signal recognition
           particle-like) [Stenotrophomonas maltophilia K279a]
 gi|219719045|gb|EED37570.1| signal recognition particle protein [Stenotrophomonas sp. SKA14]
          Length = 458

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 146/294 (49%), Gaps = 23/294 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   I  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELTAVMGAEASDLNLNVPA-PAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QLK  A++    F  S       A+   A   A+
Sbjct: 121 AKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
              VDVL++DTAGRL  +  +MA I  +         HA   P   L V+DA TGQ+A  
Sbjct: 181 KSFVDVLLVDTAGRLAIDEAMMAEIKAL---------HAAVNPAETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             + F      TG+++TK DG ARGG  + +      P+ F+GV E    L+ F
Sbjct: 232 TAKAFGDALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVF 285


>gi|15924227|ref|NP_371761.1| signal recognition particle-like protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926820|ref|NP_374353.1| hypothetical protein SA1080 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267728|ref|YP_001246671.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393786|ref|YP_001316461.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979558|ref|YP_001441817.1| signal recognition particle-like protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253315595|ref|ZP_04838808.1| signal recognition particle-like protein [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255006024|ref|ZP_05144625.2| signal recognition particle-like protein [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795707|ref|ZP_05644686.1| signal recognition particle protein [Staphylococcus aureus A9781]
 gi|258415931|ref|ZP_05682201.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A9763]
 gi|258419678|ref|ZP_05682645.1| signal recognition particle protein [Staphylococcus aureus A9719]
 gi|258434849|ref|ZP_05688923.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A9299]
 gi|258444575|ref|ZP_05692904.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A8115]
 gi|258447592|ref|ZP_05695736.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A6300]
 gi|258449434|ref|ZP_05697537.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A6224]
 gi|258454813|ref|ZP_05702777.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A5937]
 gi|269202853|ref|YP_003282122.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892724|ref|ZP_06300959.1| signal recognition particle protein [Staphylococcus aureus A8117]
 gi|282927578|ref|ZP_06335194.1| signal recognition particle protein [Staphylococcus aureus A10102]
 gi|295407176|ref|ZP_06816977.1| signal recognition particle protein [Staphylococcus aureus A8819]
 gi|296274794|ref|ZP_06857301.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245937|ref|ZP_06929796.1| signal recognition particle protein [Staphylococcus aureus A8796]
 gi|13701037|dbj|BAB42332.1| ffh [Staphylococcus aureus subsp. aureus N315]
 gi|14247007|dbj|BAB57399.1| signal recognition particle homolog [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|147740797|gb|ABQ49095.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946238|gb|ABR52174.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721693|dbj|BAF78110.1| signal recognition particle homolog [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|257789679|gb|EEV28019.1| signal recognition particle protein [Staphylococcus aureus A9781]
 gi|257839267|gb|EEV63741.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A9763]
 gi|257844263|gb|EEV68645.1| signal recognition particle protein [Staphylococcus aureus A9719]
 gi|257849210|gb|EEV73192.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A9299]
 gi|257850068|gb|EEV74021.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A8115]
 gi|257853783|gb|EEV76742.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A6300]
 gi|257857422|gb|EEV80320.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A6224]
 gi|257863196|gb|EEV85960.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A5937]
 gi|262075143|gb|ACY11116.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282590581|gb|EFB95658.1| signal recognition particle protein [Staphylococcus aureus A10102]
 gi|282764721|gb|EFC04846.1| signal recognition particle protein [Staphylococcus aureus A8117]
 gi|285816919|gb|ADC37406.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus
           aureus 04-02981]
 gi|294968029|gb|EFG44057.1| signal recognition particle protein [Staphylococcus aureus A8819]
 gi|297177101|gb|EFH36355.1| signal recognition particle protein [Staphylococcus aureus A8796]
 gi|312829631|emb|CBX34473.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|329727576|gb|EGG64032.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 455

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 134/269 (49%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L  +D+   V ++ ++ +  +    DV       Q+V+  V + + K++   +   N   
Sbjct: 39  LFEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+++VG+ G GKTT  GKL+  M      K ML A D +R AAI+QL+    +  
Sbjct: 98  NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K   
Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKEIAK--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+ ++ V+D+ TGQ+A+   E F      TG+ +TK+DG  RGG  + I    + P+
Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+ E ++ LE F  +  ++ I G  D
Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300


>gi|124514042|ref|XP_001350377.1| signal recognition particle receptor alpha subunit, putative
           [Plasmodium falciparum 3D7]
 gi|23615794|emb|CAD52786.1| signal recognition particle receptor alpha subunit, putative
           [Plasmodium falciparum 3D7]
          Length = 576

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 150/283 (53%), Gaps = 39/283 (13%)

Query: 48  ELEDLLIRSDIGVAVAQKIV----EELLTKR---YAKDV--SVQRVLYDVSELIHKMLMP 98
           E+++ L+  ++ + +   ++    E L+ K+   +A +V  +V  VL   SE I  +L+P
Sbjct: 294 EIKNKLLSKNVAIGICDTLIDRMKENLIGKKKTLFALNVKKTVSNVL---SETIQSILIP 350

Query: 99  ------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFR 151
                 L          + + I+ +GVNGVGK+T + K+   + + G LK+M+AA DTFR
Sbjct: 351 KDSVDVLRSAIESKSMGKLYSIVFLGVNGVGKSTNLAKVCYYLKNKGNLKIMIAACDTFR 410

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           + A++QL+I A+  +        G DA+A+A EA   A+ +  DV++IDTAGR+ +N  L
Sbjct: 411 AGAVEQLRIHANCLNVFLYEKGYGKDASAIAKEAILYAKKENYDVILIDTAGRMQDNEPL 470

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-----AVAGTT------G 260
           M  +GK+I        + P  +L V +A  G +A+ Q++ F+     A   +T      G
Sbjct: 471 MRSLGKLILY------NNPDLILFVGEALVGNDAIDQLKKFNQALTDATCNSTNKRTIDG 524

Query: 261 LIMTKMDGTAR--GGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +I+TK D      G  L  + +T K P+ F+GVG+    L+ F
Sbjct: 525 IILTKFDTVDDKVGTALSMVYLTGK-PIVFVGVGQKYTHLKKF 566


>gi|319780681|ref|YP_004140157.1| signal recognition particle protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166569|gb|ADV10107.1| signal recognition particle protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 536

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 112/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT   K++K++S+    KV++A+ DT R AA +QL+   ++     
Sbjct: 100 PVVIMMVGLQGSGKTTTSAKIAKRLSERQNKKVLMASLDTRRPAAQEQLRQLGEQVKVAT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM  +  + +V       +
Sbjct: 160 LPIIDGQSPVDIARRAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKV------SS 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+   + F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADSLTGQDAVNLAKSFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE ++ LE F  K  +  I G  D
Sbjct: 274 GTGEKMDGLEEFHPKRIADRILGMGD 299


>gi|315131030|gb|EFT87014.1| hypothetical protein CGSSa03_05784 [Staphylococcus aureus subsp.
           aureus CGS03]
          Length = 455

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 134/269 (49%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L  +D+   V ++ ++ +  +    DV       Q+V+  V + + K++   +   N   
Sbjct: 39  LFEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+++VG+ G GKTT  GKL+  M      K ML A D +R AAI+QL+    +  
Sbjct: 98  NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K   
Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKEIAK--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+ ++ V+D+ TGQ+A+   E F      TG+ +TK+DG  RGG  + I    + P+
Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+ E ++ LE F  +  ++ I G  D
Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300


>gi|255003289|ref|ZP_05278253.1| signal recognition particle protein (ffh) [Anaplasma marginale str.
           Puerto Rico]
          Length = 451

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 156/290 (53%), Gaps = 15/290 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L KG AS   KL  G    IS +  D  V E++   L+ +D+ + V ++ + ++ +K   
Sbjct: 5   LAKGIASAVQKL--GGRREISDKDFD-LVLEDVTQALLDADVNLMVVEQFIGDVKSKIVG 61

Query: 77  KDVSVQRVLYD--VSELIHKMLMPL--SKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKL 131
            +V V+ VL +  + +L+ + L+ +  ++    D S + P  I++VG+ GVGKTT   K+
Sbjct: 62  GEV-VKGVLPEQMIIKLMEECLIEVLGNEKSELDLSGKAPVAIMMVGLQGVGKTTNTVKV 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+  +  KV++A+ D +R AA +QL + A     D +    G     +A  A K+A+ 
Sbjct: 121 AFKLKKSEKKVLVASLDVYRPAAQEQLGVLAQGVGVDSLPIVEGELPLDIAKRAMKEAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRLH +  +   IG++  + K +   +P+  + V+D   GQ+A+  V  
Sbjct: 181 GGYDVVIVDTAGRLHIDQEM---IGELQLIKKEV---SPNETILVVDCMMGQDAVEVVRG 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           FH     TG I T+ DG +RGG ++ + +    P+ F+  GE   DL+ F
Sbjct: 235 FHDKLNLTGTIFTRADGDSRGGAILSMKMVSGCPIKFMSTGEKPEDLDDF 284


>gi|156100321|ref|XP_001615888.1| signal recognition particle 54 kDa protein [Plasmodium vivax SaI-1]
 gi|148804762|gb|EDL46161.1| signal recognition particle 54 kDa protein, putative [Plasmodium
           vivax]
          Length = 500

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 136/284 (47%), Gaps = 19/284 (6%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVL--YDVSEL 91
           D  + E L+++   LI +DI ++  + I   +  K   K++ +     +R++  Y V EL
Sbjct: 25  DSAIEECLKEVMRALILADINISYLKDIKSNI-KKNIEKNIDLYGNNKKRLVQQYVVEEL 83

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           I+  L+   K          +VIL VG+ G GKTT   K +      G K  L   DTFR
Sbjct: 84  IN--LLEGKKESYVPKKGSRNVILFVGLQGSGKTTTCTKFAHYYQKKGFKTALVCADTFR 141

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           + A DQLK  A +    F  S    D   +A +       +K D++I+D++GR    S L
Sbjct: 142 AGAFDQLKQNAAKVKIPFYGSYSEVDPVKIASDGVNAFLKEKYDLIIVDSSGRHKQESEL 201

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
              + ++   ++      P  ++ V+D+  GQ+   Q   F        +I+TK+DG A+
Sbjct: 202 FEEMKQVESSIR------PEEIVFVIDSHIGQSCHDQAMAFKNSVTLGSIIITKIDGHAK 255

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GGG +  V +   P+ F+G GE IND E F AK F + + G  D
Sbjct: 256 GGGALSAVASTGCPITFIGTGEHINDFENFEAKSFVSRLLGLGD 299


>gi|307943452|ref|ZP_07658796.1| signal recognition particle protein [Roseibium sp. TrichSKD4]
 gi|307773082|gb|EFO32299.1| signal recognition particle protein [Roseibium sp. TrichSKD4]
          Length = 519

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 157/306 (51%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL--DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
           F S S +L  GI D ++ R    ++ V E L ++   LI +D+ + V +   +++  +  
Sbjct: 2   FESLSDRL-SGIFDKLTGRGALSENDVNEALREIRRALIEADVALPVVRSFTDKVKHRAV 60

Query: 76  AKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V  SV   Q V+  V + + +ML    +  + + +  P  I++VG+ G GKTT   K
Sbjct: 61  GAEVVKSVTPGQMVVKIVHDQLIEMLGVDGQAIDLN-APAPVAIMMVGLQGSGKTTTTSK 119

Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++++++     KV++A+ DT R AA +QLK+  ++   D +    G     +A  A   A
Sbjct: 120 IARRLTQRDKRKVLMASLDTRRPAAQEQLKVLGEQNEIDTLPIIEGQGPVEIANRAMSAA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DV+++DTAGR+H +  LM  + ++ +  +      PH +L V DA TGQ+A+   
Sbjct: 180 KLGGYDVVMLDTAGRIHIDEPLMVEMAEVKKAAQ------PHEILLVADALTGQDAVNLA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F    G TG+ +T+MDG  RGG  + +      PV  +G GE  + LE F  K  +  
Sbjct: 234 KSFDERVGITGIALTRMDGDGRGGAALSMQAVTGKPVKLIGTGEKSDALEDFYPKRIADR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|15828813|ref|NP_326173.1| signal recognition particle protein [Mycoplasma pulmonis UAB CTIP]
 gi|14089756|emb|CAC13515.1| SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
           [Mycoplasma pulmonis]
          Length = 449

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 137/279 (49%), Gaps = 32/279 (11%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM-------------LMPL--SK 101
           DI  A+ +  V  L+ K++ KDV  ++ L   SELI K+             L  L   K
Sbjct: 33  DIKFALLEADVNLLVVKKFIKDVK-EKALE--SELIGKLNPSQTMIKIVKDELTTLLGGK 89

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-----KKMSDAGLKVMLAAGDTFRSAAID 156
                   +PHVI+ VG+ G GKTT + K++     KK  +  L   L A D +R AAID
Sbjct: 90  AQEIKIVKKPHVIMFVGLQGGGKTTTVAKVAYYLRKKKFVENPL---LVACDVYRPAAID 146

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL+  A +       +++       A +A  QA  +K D++IIDTAGRL  +  LM  + 
Sbjct: 147 QLQTLAKQIQIPVYANDVSVSPIKTARQALDQAYKEKNDLVIIDTAGRLSIDEKLMEELL 206

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            + + +K      P  ++ V DA +GQ+ +   + FH     +  I+TK+D  ARGG  +
Sbjct: 207 LIKKEIK------PDEIIFVADAMSGQDIINVAKTFHEKLSLSSSIITKLDSDARGGAAL 260

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I     IP+ F+G GE I++++ F A   +  I G  D
Sbjct: 261 SIREILNIPIKFIGTGEKISNIDIFHADRMAERILGMGD 299


>gi|291437016|ref|ZP_06576406.1| signal recognition particle protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291339911|gb|EFE66867.1| signal recognition particle protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 537

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 142/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++ +  +    +VS      Q+VL  V+E +  +L 
Sbjct: 49  DATAREIRIALLEADVALPVVRTFIKNVKERALGAEVSKALNPAQQVLKIVNEELVTILG 108

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL + + + G   +L A D  R  A++Q
Sbjct: 109 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKEQGHSPVLVAADLQRPNAVNQ 167

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++   A+AK  D++I+DTAGRL  +  +M  
Sbjct: 168 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIDFARAKVHDIVIVDTAGRLGIDQEMMQQ 227

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 228 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 281

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GE ++D + F     ++ I   LD G+
Sbjct: 282 ALSIRQVTGKPIMFASNGEKLDDFDAFHPDRMASRI---LDMGD 322


>gi|319401472|gb|EFV89682.1| signal recognition particle protein [Staphylococcus epidermidis
           FRI909]
          Length = 455

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  M      K +L AGD +R AAIDQL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAIDQLQTVGKQIDIPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K      
Sbjct: 161 YSEGDQVPPQQIVENALKHAKEEHLDFVIIDTAGRLHIDETLMNELQEVKEISK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ V+DA TGQ+A+   + F      +G+ +TK+DG  RGG  + I    + P+ F+
Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDEQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+ E ++ LE F  +  ++ I G  D
Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300


>gi|260467296|ref|ZP_05813470.1| signal recognition particle protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259028900|gb|EEW30202.1| signal recognition particle protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 535

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 113/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT   K++K++++    KV++A+ DT R AA +QL+   ++     
Sbjct: 100 PVVVMMVGLQGSGKTTTSAKIAKRLTERQNKKVLMASLDTRRPAAQEQLRQLGEQVKVAT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G +   +A  A + A+    DV+I+DTAGR H +  LM  +  + +V       +
Sbjct: 160 LPVIAGQNPVDIAKRAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKV------SS 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+   + F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADSLTGQDAVNLAKSFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE ++ LE F  K  +  I G  D
Sbjct: 274 GTGEKMDGLEEFHPKRIADRILGMGD 299


>gi|46446288|ref|YP_007653.1| signal recognition particle chain ffh [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399929|emb|CAF23378.1| probable signal recognition particle chain ffh [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 454

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 144/297 (48%), Gaps = 31/297 (10%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
           +E I+D ++  RL           L+ +D+   V + +V     KR  +    ++V+  V
Sbjct: 36  EENISDAVNEVRL----------ALLEADVNYGVTKTLV-----KRLKEQSLGEQVIKSV 80

Query: 89  S------ELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           +      +++H  L+ L   +        +P VI++ G+ G GKTT   KL+K +   GL
Sbjct: 81  TPGQQFIKIVHDELVALMGGEEATLHLEGKPAVIMLCGLQGAGKTTHCAKLAKYLKKKGL 140

Query: 141 --KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
               +LAA D  R AA++QLK    +            D   +A +A K AQ  + D+LI
Sbjct: 141 CKNPLLAACDLQRPAAVEQLKTLGQQIHVPVFTIVGEKDPVRIAKDALKHAQEAQHDLLI 200

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRLH ++ LM  + K+  VL       P  +L V +ATTGQ+A+     F      
Sbjct: 201 VDTAGRLHVDNELMTQLEKIKEVLN------PGEILFVANATTGQDAVNVATEFSKRIEV 254

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G I+T +DG ARGG  I I      P+ F G+GE ++DL+ F     +  I G  D
Sbjct: 255 SGTILTMLDGNARGGAAISIREVTGKPLKFEGIGEKVDDLQLFNPNSMADRILGMGD 311


>gi|254472514|ref|ZP_05085914.1| signal recognition particle protein [Pseudovibrio sp. JE062]
 gi|211958797|gb|EEA93997.1| signal recognition particle protein [Pseudovibrio sp. JE062]
          Length = 518

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 139/274 (50%), Gaps = 13/274 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102
           E+   LI +D+ + + +   +++  +    +V       Q V+  V + + +ML   S P
Sbjct: 33  EVRRALIEADVALPIVRSFTDKVKHRAVGAEVVKSIKPGQMVVKIVHDQLVEMLGEESHP 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIW 161
            + + +  P  I++VG+ G GKTT  GK++++++     KV++A+ DT R AA +QLK+ 
Sbjct: 93  IDLN-APAPVCIMMVGLQGAGKTTATGKIARRLTQRDKRKVLMASLDTRRPAAQEQLKVL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            ++   D +    G     +A  A   A+    DV+++DTAGR H +  LM  + + I+ 
Sbjct: 152 GEQNEIDTLPIIEGQQPVDIAKRALNAAKLGGYDVVMLDTAGRGHIDEPLMVEM-EQIKA 210

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                   PH VL V DA TGQ+A+   + F      TG+++T+MDG  RGG  + +   
Sbjct: 211 ASN-----PHEVLLVADALTGQDAVNLAKSFDERCSITGIMLTRMDGDGRGGAALSMRAV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+  +G GE  + LE F  K  +  I G  D
Sbjct: 266 TGKPIKLIGTGEKSDALEDFHPKRIADRILGMGD 299


>gi|307565825|ref|ZP_07628286.1| signal recognition particle protein [Prevotella amnii CRIS 21A-A]
 gi|307345449|gb|EFN90825.1| signal recognition particle protein [Prevotella amnii CRIS 21A-A]
          Length = 456

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 145/281 (51%), Gaps = 17/281 (6%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + +  K    +V +  +    + +L+H  L  L
Sbjct: 26  NVAETLKDVRRALLDADVNYKVAKSFTDRVKAKALGMNVLTAVKPGQLMVKLVHDELALL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAID 156
              +       +RP +IL+ G+ G GKTT  GKL+K +     K  +L A D +R AAID
Sbjct: 86  MGGEAVGMSLENRPAIILMSGLQGSGKTTFAGKLAKMLKTKNHKQPLLVACDVYRPAAID 145

Query: 157 QLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           QLK+  ++     V SE G+ +   +A  A  +A++K  DV+IIDTAGRL  +  +M  I
Sbjct: 146 QLKVVGEQVDVP-VYSEAGNKNVNEIATHAIAEAKSKGNDVIIIDTAGRLAVDEDMMNEI 204

Query: 216 GKMIRVLKRLDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
                  + L  H  P   L V+D+ TGQ+A+   + F++     G+++TK+DG  RGG 
Sbjct: 205 -------ESLKNHITPDETLFVVDSMTGQDAVNTAKEFNSRLDFDGVVLTKLDGDTRGGA 257

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + I      P+ F+G GE ++ ++ F  +  +  I G  D
Sbjct: 258 ALSIRTVVTKPIKFIGTGEKMDAIDVFHPERMADRILGMGD 298


>gi|296117621|ref|ZP_06836205.1| signal recognition particle protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969352|gb|EFG82593.1| signal recognition particle protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 541

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 141/283 (49%), Gaps = 26/283 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  ++ +  +    +VS      Q+V+  V+E +  +L   ++   +  
Sbjct: 38  LLEADVSLTVVRGFIKRVKERAVGAEVSEALNPAQQVIKIVNEELVTILGGETRRLQF-A 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
            + P VI++ G+ G GKTT+ GKL+K +S  G   ML A D  R  A+ QL+I  +R   
Sbjct: 97  KNPPTVIMLAGLQGAGKTTLAGKLAKHLSGQGHTPMLVACDLQRPGAVQQLEIVGERAGV 156

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   TS D    E+G+   D   +A    ++A+  + DV+IIDTAGRL  +  LM 
Sbjct: 157 PTFAPDAGTSVDAHDHEMGTSTGDPVQVAQAGIEEAKRAQHDVVIIDTAGRLGIDETLMT 216

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              + IR     D   P  VL V+D+  GQ+A+   E F      TG+++TK+DG ARGG
Sbjct: 217 Q-ARNIR-----DAVNPDEVLFVIDSMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGG 270

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
             + I      P+ F   GE + + + F  +  ++ I G  D 
Sbjct: 271 AALSIREVTGKPIMFASTGEKLENFDVFHPERMASRILGMGDM 313


>gi|52080200|ref|YP_078991.1| signal recognition particle-like (SRP) component [Bacillus
           licheniformis ATCC 14580]
 gi|52785577|ref|YP_091406.1| hypothetical protein BLi01818 [Bacillus licheniformis ATCC 14580]
 gi|52003411|gb|AAU23353.1| signal recognition particle-like (SRP) component [Bacillus
           licheniformis ATCC 14580]
 gi|52348079|gb|AAU40713.1| Ffh [Bacillus licheniformis ATCC 14580]
          Length = 446

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +        +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTSTGKLANLLRKKHNRNPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+    D ++IDTAGRLH +  LM  + ++    +    
Sbjct: 159 PVFSLGDKVSPVEIAKQAIEKAKEDHHDYVLIDTAGRLHIDEELMDELEQVKETAQ---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+D+ TGQ+A+   + F+   G TG+I+TK+DG  RGG  + I      P+ 
Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNEQLGVTGVILTKLDGDTRGGAALSIRAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LEPF  +  ++ I G  D
Sbjct: 273 FAGMGEKLDALEPFHPERMASRILGMGD 300


>gi|332530704|ref|ZP_08406635.1| signal recognition particle protein [Hylemonella gracilis ATCC
           19624]
 gi|332039872|gb|EGI76267.1| signal recognition particle protein [Hylemonella gracilis ATCC
           19624]
          Length = 467

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 114/219 (52%), Gaps = 8/219 (3%)

Query: 99  LSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
           L  P + + + +P  VIL+ G+ G GKTT   KL++ + +    KV+  +GD +R AAI+
Sbjct: 95  LKGPADINLAAQPPAVILMAGLQGAGKTTTTAKLARHLITKRKKKVLTVSGDVYRPAAIE 154

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK    +  A++  S      + +A  A   A+    DVL++DTAGRL  +  LM  I 
Sbjct: 155 QLKTVTAQAGAEWFPSTPDQKPSDIARAALDYAKKHYFDVLLVDTAGRLAIDEALMKEIQ 214

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +  +L       P   L V+DA  GQ+A+   + F      TG+++TKMDG +RGG  +
Sbjct: 215 DLHAILD------PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKMDGDSRGGAAL 268

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +      P+ F GV E I+ LE F A+  +  + G  D
Sbjct: 269 SVRAVTGAPIKFAGVSEKIDGLEVFDAERHAGRVLGMGD 307


>gi|325687450|gb|EGD29471.1| signal recognition particle protein [Streptococcus sanguinis SK72]
          Length = 524

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLTNKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|251772981|gb|EES53538.1| signal recognition particle protein [Leptospirillum
           ferrodiazotrophum]
          Length = 444

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 27/282 (9%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-----VSVQRVLYDV-SELIHKM----- 95
           EE+   L+ +D+ + V +   E L  +   +         Q+V+ +V  E++H +     
Sbjct: 32  EEIRVALLEADVSLDVVKSFTEGLSARLVGQAQKSGLTGAQQVIAEVYQEMVHILGDHRA 91

Query: 96  -LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            +   SKP        P +I ++G+ G GKTT   KL+        +V+L A D  R AA
Sbjct: 92  TIALASKP--------PTIIFMMGLQGSGKTTTAAKLALHFKGQNRRVLLVASDLARLAA 143

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV-DVLIIDTAGRLHNNSILMA 213
           IDQLK+  ++     +    G+   +  Y   K+   + + +V+I+DTAGRL  +S LM 
Sbjct: 144 IDQLKVLGEQIGVPVLLPPDGTTRPSDLYPLVKRRVIEGMYEVVIVDTAGRLTVDSALMG 203

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
                ++ L+RL  ++P   L V+DA  GQ A+   + F A  G  G++ TK+DG  RGG
Sbjct: 204 ----ELKELRRL--YSPKECLLVVDAMQGQEAVGVAKTFDAEIGVDGVVFTKLDGDTRGG 257

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            ++ I    K P+ F+G+GE ++ LE F     ++ I G  D
Sbjct: 258 AVLSIRQVLKKPIKFVGMGEKLDRLEAFFPDRMASRIIGMGD 299


>gi|310286866|ref|YP_003938124.1| Signal recognition particle, subunit FFH/SRP54 [Bifidobacterium
           bifidum S17]
 gi|309250802|gb|ADO52550.1| Signal recognition particle, subunit FFH/SRP54 [Bifidobacterium
           bifidum S17]
          Length = 548

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 153/324 (47%), Gaps = 36/324 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTARIRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 64  TEVSEALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D+G   +L A D  R  A+ QL++  +         E G               
Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGEHAGVPVYAPEKGVQSDGGDSVSAPGET 182

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A ++   A+ K  D +IIDTAGRL  + +LM    +  R ++  D   P+ +L
Sbjct: 183 SGDPVKVARDSIALAKQKLYDTVIIDTAGRLGVDEVLM----QQARDIR--DAVNPNEIL 236

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG
Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           + D E F     ++ I   LD G+
Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317


>gi|49483400|ref|YP_040624.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|258423922|ref|ZP_05686807.1| signal recognition particle protein [Staphylococcus aureus A9635]
 gi|282903791|ref|ZP_06311679.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905555|ref|ZP_06313410.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908530|ref|ZP_06316360.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910809|ref|ZP_06318612.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282916487|ref|ZP_06324249.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus D139]
 gi|282918935|ref|ZP_06326670.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus C427]
 gi|283770299|ref|ZP_06343191.1| signal recognition particle subunit SRP54 [Staphylococcus aureus
           subsp. aureus H19]
 gi|283957979|ref|ZP_06375430.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295427723|ref|ZP_06820355.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591318|ref|ZP_06949956.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49241529|emb|CAG40215.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257845951|gb|EEV69980.1| signal recognition particle protein [Staphylococcus aureus A9635]
 gi|282316745|gb|EFB47119.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus C427]
 gi|282319927|gb|EFB50275.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus D139]
 gi|282325414|gb|EFB55723.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327592|gb|EFB57875.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330847|gb|EFB60361.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595409|gb|EFC00373.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|283460446|gb|EFC07536.1| signal recognition particle subunit SRP54 [Staphylococcus aureus
           subsp. aureus H19]
 gi|283470450|emb|CAQ49661.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283790128|gb|EFC28945.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295128081|gb|EFG57715.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576204|gb|EFH94920.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MN8]
 gi|298694530|gb|ADI97752.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ED133]
 gi|302332841|gb|ADL23034.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|312438385|gb|ADQ77456.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315194125|gb|EFU24518.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|323441012|gb|EGA98719.1| signal recognition particle protein [Staphylococcus aureus O11]
 gi|323442329|gb|EGA99959.1| signal recognition particle protein [Staphylococcus aureus O46]
          Length = 455

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 135/269 (50%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V ++ ++ +  +    DV       Q+V+  V + + K++   +   N   
Sbjct: 39  LLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+++VG+ G GKTT  GKL+  M      K ML A D +R AAI+QL+    +  
Sbjct: 98  NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K   
Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+ ++ V+D+ TGQ+A+   E F      TG+ +TK+DG  RGG  + I    + P+
Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+ E ++ LE F  +  ++ I G  D
Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300


>gi|322378714|ref|ZP_08053145.1| signal recognition particle protein [Helicobacter suis HS1]
 gi|321148857|gb|EFX43326.1| signal recognition particle protein [Helicobacter suis HS1]
          Length = 444

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 143/271 (52%), Gaps = 11/271 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMP-LSKPFN 104
           EEL+  L+R+D+   V +++V+ +  K  AK +  Q+    + E L+  + +P  S  F 
Sbjct: 30  EELKKALLRNDVHHKVVKELVKNIEAKTKAKGIGKQQFFDALQESLLEILSVPGCSSGFV 89

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           +  +  P ++L+ G+ G GKTT   KL+  +     KV+L A D  R AA++QL++   +
Sbjct: 90  YAPTP-PTIVLMCGLQGGGKTTTCAKLAHYLKTRHKKVLLVACDLERLAAVEQLQVLGTQ 148

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +    E GS    +A  A ++A+  + DV+I+D+AGRL  +  LM  +  +  ++K 
Sbjct: 149 IGVEVFYQE-GS-ILEIAKGALERAKEGQFDVVIVDSAGRLAIDQNLMQELKALKDLIK- 205

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P     V DA +GQ+ +R    FH   G +G++++K D  ++GG  + I    +I
Sbjct: 206 -----PSETFYVADALSGQDGVRSAGTFHTEIGLSGVVLSKFDSDSKGGVALGIAHQLQI 260

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE I DL+ F+    +  + G  D
Sbjct: 261 PLRFIGHGEKIPDLDIFMPDRIANRLMGAGD 291


>gi|146298009|ref|YP_001192600.1| signal recognition particle protein [Flavobacterium johnsoniae
           UW101]
 gi|146152427|gb|ABQ03281.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Flavobacterium johnsoniae UW101]
          Length = 450

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           + S  P VIL+ G+ G GKTT  GKL+  + +    K +L A D +R AAI+QL +  D+
Sbjct: 94  NLSGNPSVILMSGLQGSGKTTFSGKLANFLKTKKNKKPLLVACDIYRPAAINQLHVVGDQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +        +   +A  A K A+A   +V+I+DTAGRL  +  +M  I ++ + ++ 
Sbjct: 154 IGVEVYSEPENKNPVEIAQNAIKHAKANGFNVVIVDTAGRLAVDQEMMDEIARVHKAIQ- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+D+ TGQ+A+   + F+ +    G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDILNFDGVILTKLDGDTRGGAAISIKSVVNK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +  ++ F     +  I G  D
Sbjct: 268 PIKFVGTGEKMEAIDVFYPDRMAERILGMGD 298


>gi|311068118|ref|YP_003973041.1| signal recognition particle protein [Bacillus atrophaeus 1942]
 gi|310868635|gb|ADP32110.1| signal recognition particle protein [Bacillus atrophaeus 1942]
          Length = 446

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+ +  D +I+DTAGRLH +  LM  +  +  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDELANVKEIAN---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+D+ TGQ+A+   + F+   G TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LE F  +  ++ I G  D
Sbjct: 273 FAGLGEKLDALEAFHPERMASRILGMGD 300


>gi|332667956|ref|YP_004450744.1| signal recognition particle protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336770|gb|AEE53871.1| signal recognition particle protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 450

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 19/278 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPL----- 99
           +E+   L+ +D+   +A++  + +  K    D     VL  VS  +L+ K++M       
Sbjct: 32  KEIRRALVDADVSYKIAKEFTDRVKEKALGSD----NVLKAVSPGQLMIKIVMDELTDLM 87

Query: 100 -SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQ 157
             +    + + +P VIL+ G+ G GKTT  GKL+  +     K  +L A D +R AA+DQ
Sbjct: 88  GGQAAGLNLAGKPTVILIAGLQGSGKTTFSGKLAHWLKTQKKKSPLLVACDVYRPAAMDQ 147

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L + A++            +   +A +A + A   K DV+I+DTAGRL  +  +MA I  
Sbjct: 148 LTVLAEQVGVPVYKEPESKNPVQIALKAIQYAIEHKCDVVIVDTAGRLAIDEEMMAEIKN 207

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +   +       P   L V+DA TGQ+A+   ++F+      G+++TKMDG  RGG  + 
Sbjct: 208 IKEAI------LPQETLFVVDAMTGQDAVNTAQVFNETINFDGVVLTKMDGDTRGGAALS 261

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +  T   P+ F   GE ++ LE F     +  I G  D
Sbjct: 262 VKYTVGKPIKFASTGEKMDALELFYPDRMAQRILGMGD 299


>gi|144898174|emb|CAM75038.1| Signal recognition particle GTPase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 455

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VIL+VG+ G GKTT  GKL+ ++     KV+LA+ D +R AA  QL+I A +     +
Sbjct: 100 PAVILMVGLQGSGKTTTSGKLAVRLKKDKKKVLLASLDVYRPAAQQQLEILARQADVGSL 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
              +G    A+   A    + +  DV+I+DTAGRLH +  LMA +  +  V K      P
Sbjct: 160 PIIMGEMPVAITKRALDVGRKEGYDVVILDTAGRLHIDQELMAEVAAVRDVAK------P 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L V+DA  GQ+A+     F+   G TG+++T++DG +RGG  + +      P+ FLG
Sbjct: 214 VETLLVVDAMIGQDAVTLAHEFNEKVGVTGMVLTRVDGDSRGGAALSMRAVTGRPIKFLG 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           +GE +  LEPF     +  I G  D
Sbjct: 274 MGEKLEALEPFHPDRLAGRILGMGD 298


>gi|320535868|ref|ZP_08035944.1| signal recognition particle protein [Treponema phagedenis F0421]
 gi|320147281|gb|EFW38821.1| signal recognition particle protein [Treponema phagedenis F0421]
          Length = 446

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 150/308 (48%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----E 68
            + K+T  F+    K+  G    I+ + ++D V EE++  L+ +D+ + V ++ +    E
Sbjct: 1   MLEKITDTFSGIIRKI--GGKATITEKNIEDAV-EEIKTALLDADVNLRVVRRFINATIE 57

Query: 69  ELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E   +   K V+  Q+ +  V + I   L    +           VIL +G+ G GKTT 
Sbjct: 58  EAKGETVLKSVNPGQQFVKIVHDKILSFLGDDKQDLQLKGPDTQSVILFLGLQGSGKTTS 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+ ++   G K +L A D  R AAI+QL +   +     V  E   +A  +A     
Sbjct: 118 AAKLAARLKKEGRKPLLVACDLVRPAAIEQLSVLGTQIEVP-VYKEESKNAVQVAKNGLA 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    D +I+DTAGRL  ++ +M    ++I + K ++P      L V D+ TGQ+A+ 
Sbjct: 177 FAKKNFYDTVIVDTAGRLQIDAEMM---NEIIAIKKAINPV---ETLLVADSMTGQSAVD 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F    G +G+I+TK D   RGG  + +      P+ F+G GE I DLEPF  +  +
Sbjct: 231 IAKEFDGSVGLSGVILTKFDSDTRGGAALSLKTITGKPILFIGTGEKIEDLEPFYPERIA 290

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 291 SRILGMGD 298


>gi|27467830|ref|NP_764467.1| ffh protein [Staphylococcus epidermidis ATCC 12228]
 gi|251810667|ref|ZP_04825140.1| signal recognition particle protein Ffh [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876331|ref|ZP_06285198.1| signal recognition particle protein [Staphylococcus epidermidis
           SK135]
 gi|293366798|ref|ZP_06613474.1| signal recognition particle protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315375|gb|AAO04509.1|AE016747_6 ffh protein [Staphylococcus epidermidis ATCC 12228]
 gi|251805827|gb|EES58484.1| signal recognition particle protein Ffh [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295356|gb|EFA87883.1| signal recognition particle protein [Staphylococcus epidermidis
           SK135]
 gi|291319099|gb|EFE59469.1| signal recognition particle protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329724304|gb|EGG60816.1| signal recognition particle protein [Staphylococcus epidermidis
           VCU144]
 gi|329736314|gb|EGG72586.1| signal recognition particle protein [Staphylococcus epidermidis
           VCU028]
 gi|329736596|gb|EGG72862.1| signal recognition particle protein [Staphylococcus epidermidis
           VCU045]
          Length = 455

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  M      K +L AGD +R AAIDQL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAIDQLQTVGKQIDIPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K      
Sbjct: 161 YSEGDQVSPQQIVENALKHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ V+DA TGQ+A+   + F      +G+ +TK+DG  RGG  + I    + P+ F+
Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDEQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+ E ++ LE F  +  ++ I G  D
Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300


>gi|253748466|gb|EET02574.1| Signal recognition particle receptor [Giardia intestinalis ATCC
           50581]
          Length = 572

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 14/197 (7%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+VI + GVNGVGKTT I KL     +   + ++ A D+FRS A++QL+    R  A  
Sbjct: 367 RPYVICMTGVNGVGKTTSIAKLLYIFRNNDFRSLVCACDSFRSGAVEQLQEHCTRLGATL 426

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                G +A+A+A    K+A++   D+ +IDT GR +NN  LM  +G ++        +A
Sbjct: 427 YSQGYGKNASAIAKYGIKEAESLDYDICLIDTTGRQYNNGPLMQALGALVL------ENA 480

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAV-------AGTTGLIMTKMDGTA-RGGGLIPIVVT 281
           P  VL V +A TG   + Q++ F           G  G+I+TK D    + G  + +   
Sbjct: 481 PDVVLFVGEALTGNEGIEQLKQFDCALRSYTNSRGVDGIILTKFDTCGDKVGAALNLCFV 540

Query: 282 HKIPVYFLGVGEGINDL 298
             IP+ ++G G+   D 
Sbjct: 541 CNIPIIYVGTGQSYPDF 557


>gi|239928692|ref|ZP_04685645.1| signal recognition particle [Streptomyces ghanaensis ATCC 14672]
          Length = 516

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 135/267 (50%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++ +  +    +VS      Q+VL  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRTFIKNVKERALGAEVSKALNPAQQVLKIVNEELVTILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL + + + G   +L A D  R  A++Q
Sbjct: 88  GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKEQGHSPVLVAADLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++   A+AK  D++I+DTAGRL  +  +M  
Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIDFARAKVHDIVIVDTAGRLGIDQEMMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I      P+ F   GE ++D + F
Sbjct: 261 ALSIRQVTGKPIMFASNGEKLDDFDAF 287


>gi|71893412|ref|YP_278858.1| signal recognition particle protein [Mycoplasma hyopneumoniae J]
 gi|71851539|gb|AAZ44147.1| signal recognition particle protein [Mycoplasma hyopneumoniae J]
          Length = 440

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 154/322 (47%), Gaps = 34/322 (10%)

Query: 17  LTKGFASTSLKLKEGIT----DIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           LT    S+  KL++ IT    D++  +R +   + E   +LL+  D    V  +++++ L
Sbjct: 5   LTNRIQSSLKKLQKSITINESDLVEITREIRLALLEADVNLLVVKDFISKVKAQVLKQGL 64

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           T +        ++L       H+ L+ +    SK  N  F+    +I++VG+ G GKTT 
Sbjct: 65  TSKLNPQQEFLKIL-------HQNLLEILGINSKSIN--FNKTLTIIMLVGLQGSGKTTT 115

Query: 128 IGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
             KL+   +      K++L A DT+R AAIDQLK    +   +    E       +A EA
Sbjct: 116 AAKLAVFARQKKLAKKILLVACDTYRPAAIDQLKQLGKQVLIEVFYVE--KSPVQIAKEA 173

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              ++    D++I DTAGRL  N  LM  + ++   +K      P  +L +LDA +GQ+ 
Sbjct: 174 LIYSKNNDFDLVIFDTAGRLSINEELMNELSEIKENIK------PDQILFILDALSGQDI 227

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +   ++F+     TG I+TK+D  AR G  + I    KIPV  +G GE I+ LE F    
Sbjct: 228 INVAQIFNQKINLTGAIITKLDSNARAGAALSITHLLKIPVLLVGTGEKISALELFHPNR 287

Query: 306 FSAVITG------CLDYGEEKI 321
            +  I G       L+  EE I
Sbjct: 288 MADRILGMGDVRSLLEQAEENI 309


>gi|57242693|ref|ZP_00370630.1| signal recognition particle protein [Campylobacter upsaliensis
           RM3195]
 gi|57016622|gb|EAL53406.1| signal recognition particle protein [Campylobacter upsaliensis
           RM3195]
          Length = 445

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 137/257 (53%), Gaps = 7/257 (2%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E L+  L+++D+   V ++++  +        +  ++ L  + + + ++L    K   + 
Sbjct: 30  ESLKKSLLKADVHHKVTKELLSLIEDDVKKNGIGQKQFLEAIKKNLEEILSISGKNQGFI 89

Query: 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           FS +P  ++L+VG+ G GKTT   KL+  +     KV++AA D  R AA++QL+   +  
Sbjct: 90  FSSKPPTIVLMVGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEAN 149

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             +    E  ++   +A EA ++A++   DVL++DTAGRL  +  LM+ + ++   L   
Sbjct: 150 EIELFYIENETNPIKVAREALQKAKSGLFDVLLVDTAGRLAIDEALMSELKEVKTSLN-- 207

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  +  V DA +GQ+ ++    F+   G +G+I++K D   +GG  + I     IP
Sbjct: 208 ----PDEIFYVADAMSGQDGVKTASSFNEALGLSGVILSKFDADTKGGVALGIARQVNIP 263

Query: 286 VYFLGVGEGINDLEPFV 302
           + F+GVGE + DLE F+
Sbjct: 264 LRFIGVGEKVADLEIFI 280


>gi|269124183|ref|YP_003306760.1| signal recognition particle protein [Streptobacillus moniliformis
           DSM 12112]
 gi|268315509|gb|ACZ01883.1| signal recognition particle protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 443

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+E    +    ++ +  + E L ++   L+ +D+  +V +  V+ +  K   
Sbjct: 2   FKGLSDKLQETFKKLSGQSKITESNITEALREVRLALLEADVNYSVVKNFVKRIKEKAQG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  +++ + ++L   +   N   S +P +I++VG+ G GKTT  GKL
Sbjct: 62  QEVIKGVNPRQQFIKIINDELIEVLGGQNTSLNKSTS-KPTIIMLVGLQGAGKTTFAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K  L   D +R AA  QL + A++    F   E  ++   +      +A+ 
Sbjct: 121 AKFLKKEKSKAFLIGADVYRPAAKKQLMVLANQIGVPFFSIEDSNNVLEIVNNGLLEAKK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D ++IDTAGRLH +  LM  +  +   +       P  +L V+D  TGQ+A+   + 
Sbjct: 181 EDADYVLIDTAGRLHVDEALMQELQDVKSSVN------PTEILLVVDGMTGQDAVNVAKT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ V   TG+++TK+DG  RGG  + I      P+ ++  GE ++D+  F  +  ++ I 
Sbjct: 235 FNDVLDITGVVVTKLDGDTRGGAALSIKEISGKPIKYISEGEKLDDIAVFHPERLASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|86141178|ref|ZP_01059724.1| signal recognition particle protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85831737|gb|EAQ50192.1| signal recognition particle protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 442

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 134/273 (49%), Gaps = 10/273 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL--SKPF 103
           +E+   L+ +D+   +A+     +  K   +DV +  +    +++L+   L  L   +  
Sbjct: 32  KEIRRALVDADVNYKIAKDFTNTVKEKALGQDVLTALKPGQLMTKLVKDELTELMGGEAE 91

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWA 162
             + S  P VIL+ G+ G GKTT  GKL+  + +   K  +L A D +R AAIDQL +  
Sbjct: 92  GINLSGNPSVILMSGLQGSGKTTFSGKLANFLKNKKTKKPLLVACDVYRPAAIDQLHVVG 151

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D+   +   ++   D   ++  A   A+A   + +IIDTAGRL  +  +M  I  +   +
Sbjct: 152 DQIGVEVFSNKEEKDPVKISEAAIAHAKANGFNAVIIDTAGRLAVDQAMMNEIAAIHEAI 211

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           K      P   L V+D+ TGQ+A+   + F+ V    G+I+TK+DG  RGG  + I    
Sbjct: 212 K------PQETLFVVDSMTGQDAVNTAKAFNDVLNFDGVILTKLDGDTRGGAALSIKTVV 265

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+G GE +  ++ F     +  I G  D
Sbjct: 266 DKPIKFIGTGEKMEAIDVFYPSRMADRILGMGD 298


>gi|300708288|ref|XP_002996326.1| hypothetical protein NCER_100586 [Nosema ceranae BRL01]
 gi|239605619|gb|EEQ82655.1| hypothetical protein NCER_100586 [Nosema ceranae BRL01]
          Length = 415

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 168/325 (51%), Gaps = 35/325 (10%)

Query: 4   QKVASESLSWIRKLTKGFASTSLK--LKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +K+    +S IR+    F + + K   K+G + + S++   D ++ ++E  L++ ++   
Sbjct: 96  EKLNYSDVSVIRR---NFINITTKKAFKKGFS-LFSNKIHVDELKTKMELHLVKKNVDYN 151

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLS-KPFNWDFSHRPHV-- 113
             + + E ++ +   K+ +V+ V  D     VS ++ K++  +  K    D  ++     
Sbjct: 152 TTKILTECVINQ--LKEENVEYVSPDSFKKYVSTVLQKLIPSVDHKKLLKDIKNKKEAFS 209

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-----TSAD 168
           I  VGVNGVGK+T + K+   + +  LKV +AA DTFR+ A++QLK+  DR      S  
Sbjct: 210 ICFVGVNGVGKSTSLAKICYWLLENDLKVYIAACDTFRAGAVEQLKVHVDRFRQSGYSVG 269

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F     G D A++A  A + A ++K DV++IDTAGR+HN   LM  + K+I++      +
Sbjct: 270 FYEKGYGKDDASVARTAIQIATSEKYDVILIDTAGRMHNKLSLMESLSKLIKI------N 323

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGT-------TGLIMTKMDGT-ARGGGLIPIVV 280
            P  ++ V +A  G ++L  ++ F+              L++TK+D    + G ++ +  
Sbjct: 324 EPDFIVYVGEALVGVDSLDHIKEFNKFISKGSIHRKIDSLLLTKVDTVDDKIGQILNMTF 383

Query: 281 THKIPVYFLGVGEGINDLEPFVAKD 305
           T   PV+FLG G+  +DL    + D
Sbjct: 384 TSHAPVFFLGTGQANSDLSEITSGD 408


>gi|66818279|ref|XP_642799.1| signal recognition particle receptor alpha subunit [Dictyostelium
           discoideum AX4]
 gi|74856964|sp|Q54ZR7|SRPR_DICDI RecName: Full=Signal recognition particle receptor subunit alpha;
           Short=SR-alpha; Short=Signal recognition particle
           receptor; AltName: Full=Docking protein alpha;
           Short=DP-alpha
 gi|60470903|gb|EAL68875.1| signal recognition particle receptor alpha subunit [Dictyostelium
           discoideum AX4]
          Length = 615

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 108/203 (53%), Gaps = 19/203 (9%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+ I+  GVNGVGK+T + K+   ++  G K MLAA DTFRS AI+QLK  ADR +   
Sbjct: 406 RPYSIVFSGVNGVGKSTNLAKVCYWLTANGYKCMLAACDTFRSGAIEQLKTHADRLNVHL 465

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  DAA++A +A   A+    DV++IDT GR+ NN  LM  + K++      + + 
Sbjct: 466 FERGYSKDAASVAQDAIAFAKDTGYDVVLIDTTGRMQNNEPLMKALSKLV------NQNN 519

Query: 230 PHSVLQVLDATTGQNALRQVEMFHA----VAGTT--------GLIMTKMDGT-ARGGGLI 276
              VL V +A  G + + Q+  F      +A TT        G+I+TK D    + G  I
Sbjct: 520 VDLVLFVGEALVGNDGVDQLTKFDKSLSLLANTTQTHIRTIDGIILTKFDTIDDKVGAAI 579

Query: 277 PIVVTHKIPVYFLGVGEGINDLE 299
            +V +   P+ FLG G+   DL+
Sbjct: 580 SMVYSTGHPILFLGTGQNYTDLK 602


>gi|332360637|gb|EGJ38446.1| signal recognition particle protein [Streptococcus sanguinis SK49]
          Length = 524

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKTLAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|82750841|ref|YP_416582.1| signal recognition particle protein [Staphylococcus aureus RF122]
 gi|82656372|emb|CAI80790.1| signal recognition particle protein [Staphylococcus aureus RF122]
          Length = 455

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 135/269 (50%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V ++ ++ +  +    DV       Q+V+  V + + K++   +   N   
Sbjct: 39  LLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+++VG+ G GKTT  GKL+  M      K ML A D +R AAI+QL+    +  
Sbjct: 98  NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K   
Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+ ++ V+D+ TGQ+A+   E F      TG+ +TK+DG  RGG  + I    + P+
Sbjct: 215 ---PNEIILVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+ E ++ LE F  +  ++ I G  D
Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300


>gi|319646021|ref|ZP_08000251.1| signal recognition particle protein [Bacillus sp. BT1B_CT2]
 gi|317391771|gb|EFV72568.1| signal recognition particle protein [Bacillus sp. BT1B_CT2]
          Length = 451

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +        +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTSTGKLANLLRKKHNRNPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+    D ++IDTAGRLH +  LM  + ++    +    
Sbjct: 159 PVFSLGDKVSPVEIAKQAIEKAKEDHHDYVLIDTAGRLHIDEELMDELEQVKETAQ---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+D+ TGQ+A+   + F+   G TG+I+TK+DG  RGG  + I      P+ 
Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNEQLGVTGVILTKLDGDTRGGAALSIRAVTNTPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LEPF  +  ++ I G  D
Sbjct: 273 FAGMGEKLDALEPFHPERMASRILGMGD 300


>gi|238651027|ref|YP_002916884.1| signal recognition particle protein [Rickettsia peacockii str.
           Rustic]
 gi|238625125|gb|ACR47831.1| signal recognition particle protein [Rickettsia peacockii str.
           Rustic]
          Length = 449

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 150/290 (51%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89
           I++  ++D  +R+ +   L+ SD+ + V +  + E+  K   ++V  SV   Q ++  + 
Sbjct: 21  ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P V  L+VG+ G GKTT   KL+ ++S+   KV+L + D
Sbjct: 80  EEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLSNQNKKVLLVSLD 139

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL I A+    + +    G     +   A  +A+    DV+I DTAGR   +
Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQID 199

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M     + ++++      P   L V+D+ TGQ+A+     F+     +GLI++++DG
Sbjct: 200 KAMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            ++GG  + +    K P+ FL  GE + DLE F A+  ++ I   LD G+
Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRI---LDMGD 300


>gi|327474237|gb|EGF19644.1| signal recognition particle protein [Streptococcus sanguinis SK408]
          Length = 524

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|325689716|gb|EGD31720.1| signal recognition particle protein [Streptococcus sanguinis SK115]
          Length = 524

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|324991163|gb|EGC23097.1| signal recognition particle protein [Streptococcus sanguinis SK353]
          Length = 524

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|162447215|ref|YP_001620347.1| signal recognition particle GTPase [Acholeplasma laidlawii PG-8A]
 gi|161985322|gb|ABX80971.1| signal recognition particle GTPase [Acholeplasma laidlawii PG-8A]
          Length = 467

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 104/203 (51%), Gaps = 8/203 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            + +G+ G GKTT IGK+   +     K VML A D +R AAIDQL +   +     V  
Sbjct: 103 FMTIGLQGSGKTTAIGKMGLYIRKKDKKKVMLVAADVYRPAAIDQL-VTIGKGLGIHVYE 161

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E   DA  +     K A+    DV+I+DTAGRL  +  +M  +  +  +LK      P+ 
Sbjct: 162 EGIKDARVIVKNGLKYAKDNNYDVVIVDTAGRLTIDEDMMQELKDVKEILK------PNE 215

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL  +DA  GQ A    + FH   G TG+I+TKMDG  RGG  + I    +IP+ F   G
Sbjct: 216 VLLTVDAMMGQEAANVAKSFHDQIGATGVILTKMDGDTRGGAALSIREISQIPIKFASSG 275

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E ++ LE F  +  ++ I G  D
Sbjct: 276 EKMDSLEAFHPERMASRILGMGD 298


>gi|323351581|ref|ZP_08087235.1| signal recognition particle protein [Streptococcus sanguinis VMC66]
 gi|322122067|gb|EFX93793.1| signal recognition particle protein [Streptococcus sanguinis VMC66]
          Length = 524

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|323144365|ref|ZP_08078974.1| signal recognition particle protein [Succinatimonas hippei YIT
           12066]
 gi|322415867|gb|EFY06592.1| signal recognition particle protein [Succinatimonas hippei YIT
           12066]
          Length = 466

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 150/292 (51%), Gaps = 19/292 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    R+ +D +++ L ++   L+ +D+ + V +   +++  K   
Sbjct: 2   FDNLTERLNRTLKNISGKGRITEDNIKDTLREVRTALLEADVALPVVKSFTQKVKEKALG 61

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDF------SHRPHVILVVGVNGVGKTTVIGK 130
           ++VS+   L    E I  +   L +    +       +  P VIL+ G+ G GKTT   K
Sbjct: 62  QEVSLS--LTPGQEFIKTVYAQLVETMGGETAELNLATQPPAVILLAGLQGAGKTTSAAK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  + +    KV++ + DT+R AAIDQL   A   + D   S+  S   A+A  A  +A
Sbjct: 120 LALYIKERLKKKVLMVSVDTYRPAAIDQLLTLAKEINVDAFPSDPKSTPEAIAAAALAEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  DVLI+DTAGRL  +  +M  + K+  V+       P   L V+DA TGQ+A    
Sbjct: 180 KARFYDVLIVDTAGRLAVDEFMMDEVKKLHAVVN------PIETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           + F      TG+I+TK DG ARGG  + +      P+ F+G+GE +  LEPF
Sbjct: 234 KAFAEALPLTGVILTKADGDARGGAALSVREITGKPIKFIGMGEKVAALEPF 285


>gi|325922541|ref|ZP_08184301.1| signal recognition particle subunit FFH/SRP54 (srp54) [Xanthomonas
           gardneri ATCC 19865]
 gi|325546980|gb|EGD18074.1| signal recognition particle subunit FFH/SRP54 (srp54) [Xanthomonas
           gardneri ATCC 19865]
          Length = 458

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 139/275 (50%), Gaps = 22/275 (8%)

Query: 39  RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q ++  V +
Sbjct: 21  RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   +   N +    P +IL+ G+ G GKTT +GKL+K + +   K VM+ + D 
Sbjct: 81  ELTAVMGAAATDLNLNVPA-PAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A++    F  S+       +   A   A+   VDVL++DTAGRL  ++
Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDA 199

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +M  I  +         HA   P   L V+DA TGQ+A    + F      TG+++TK 
Sbjct: 200 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           DG ARGG  + +      P+ F+G GE  + L+ F
Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 285


>gi|254500337|ref|ZP_05112488.1| signal recognition particle protein [Labrenzia alexandrii DFL-11]
 gi|222436408|gb|EEE43087.1| signal recognition particle protein [Labrenzia alexandrii DFL-11]
          Length = 511

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 147/286 (51%), Gaps = 14/286 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSE 90
           +S   +++ +RE +   LI +D+ + + +   +++  +    +V  SV   Q V+  V +
Sbjct: 22  LSENDVNEAMRE-IRRALIEADVALPIVRSFTDKVRHRAVGAEVVKSVTPGQMVVKIVHD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDT 149
            + +ML   ++P + + +  P  I++VG+ G GKTT   K++++ +     KV++A+ DT
Sbjct: 81  QLIEMLGEDAQPIDLN-APAPVAIMMVGLQGSGKTTTTAKIARRFTQRDKRKVLMASLDT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            R AA +QLKI  ++   D +    G     +A  A   A+    DV+++DTAGR+H + 
Sbjct: 140 RRPAAQEQLKILGEQNDVDTLPIIEGQGPVEIASRAMSAAKLGGYDVVLLDTAGRIHIDE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + ++           PH ++ V D+ TGQ+A+   + F    G TG+ +T+MDG 
Sbjct: 200 PLMVEMAEVKAAAN------PHEIILVADSLTGQDAVNLAQSFDERVGITGIALTRMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            RGG  + +      PV  +G GE  + LE F  K  +  I G  D
Sbjct: 254 GRGGAALSMQAVTGKPVKLIGTGEKSDALEDFHPKRIADRILGMGD 299


>gi|325694512|gb|EGD36421.1| signal recognition particle protein [Streptococcus sanguinis SK150]
          Length = 524

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|323705465|ref|ZP_08117040.1| signal recognition particle protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535367|gb|EGB25143.1| signal recognition particle protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 446

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 137/275 (49%), Gaps = 14/275 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSK 101
           +E++  L+ +D+   V ++ +  +  K   ++V       Q V+  V++ +  ++   SK
Sbjct: 33  KEVKIALLEADVNFKVVKEFINTVTEKSLGQEVMESLTPAQHVIKIVNDELTALMG--SK 90

Query: 102 PFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
               +FS +P  VI++VG+ G GKTT  GKL+  +   G   +L A D +R AAI QL++
Sbjct: 91  ESKINFSDKPPTVIMMVGLQGSGKTTTSGKLANYLRSKGKSPVLVACDIYRPAAIKQLQV 150

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                +         +    +A  +   A+    +V+IIDTAGRLH +  LM  + K I+
Sbjct: 151 VGSSINVPVFSMGDKTSPVDIAKASIDFARNNNYNVVIIDTAGRLHVDEELMDEL-KNIK 209

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
                D   P  +L V+DA TGQ+ +   E F+      G+I+TK+DG  RGG  + +  
Sbjct: 210 -----DAVNPDEILLVVDAMTGQDVVNVAESFNEKLDIDGVILTKLDGDTRGGAALSVKA 264

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + P+ F+  GE   D+E F     ++ I G  D
Sbjct: 265 VTRKPIKFIASGEKFTDIEVFHPDRMASRILGMGD 299


>gi|171741396|ref|ZP_02917203.1| hypothetical protein BIFDEN_00479 [Bifidobacterium dentium ATCC
           27678]
 gi|171277010|gb|EDT44671.1| hypothetical protein BIFDEN_00479 [Bifidobacterium dentium ATCC
           27678]
          Length = 547

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 153/324 (47%), Gaps = 36/324 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GK
Sbjct: 64  TEVSQALNPAQQVVKIVNEELTDVLGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG--------------- 175
           L   + D+G   +L A D  R  A+ QL++  +R        E G               
Sbjct: 123 LGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSAGGEAVASPGLT 182

Query: 176 -SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A ++   A+ K  D +IIDTAGRL  +  LM    +  R ++  D   P+ +L
Sbjct: 183 TGDPVKVARDSVAFARQKLYDTVIIDTAGRLGVDEELM----RQARDIR--DAVQPNEIL 236

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG
Sbjct: 237 FVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEG 296

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           + D E F     ++ I   LD G+
Sbjct: 297 LKDFEVFHPDRMASRI---LDMGD 317


>gi|125717990|ref|YP_001035123.1| SRP54, signal recognition particle GTPase protein [Streptococcus
           sanguinis SK36]
 gi|125497907|gb|ABN44573.1| SRP54, signal recognition particle GTPase protein, putative
           [Streptococcus sanguinis SK36]
          Length = 524

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|56968646|gb|AAW32279.1| Ffh [Streptococcus mutans]
          Length = 516

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L+    ++   R+L +     V +E+   L+ +D+ + V ++ ++ +  +   
Sbjct: 3   FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+++  V+E +  +L   +       S  P +I++VG+ G GKTT  GKL
Sbjct: 63  HEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIVMVGLQGAGKTTFAGKL 121

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + K+  +   + ++ A D +R AAIDQLK    + +           A  +  +   QA+
Sbjct: 122 ANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             + D ++IDTAGRL  +  LM  +    R +K L    P+ +L V+D+  GQ A     
Sbjct: 182 ENRNDYVLIDTAGRLQIDEKLMTEL----RDIKAL--ANPNEILLVVDSMIGQEAANVAR 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ I
Sbjct: 236 EFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|332018340|gb|EGI58945.1| Signal recognition particle receptor subunit alpha-like protein
           [Acromyrmex echinatior]
          Length = 613

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 147/295 (49%), Gaps = 41/295 (13%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP- 98
           V E+L+D LI  ++   +AQK+ + + TK   K     D     V   +++ + ++L P 
Sbjct: 317 VLEKLKDHLITKNVAADIAQKLCDSVGTKLEGKILGTFDSVANTVKATLTDALVQILSPK 376

Query: 99  -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                L        S+RP+V+   GVNGVGK+T + K+   + +   +V++AA DTFR+ 
Sbjct: 377 RRIDILRDALEAKNSNRPYVMTFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAG 436

Query: 154 AIDQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           A++QL+                +++         G DAA +A EA + A+  ++DV+++D
Sbjct: 437 AVEQLRTHMRHLNALHPPEKHGNQSMVQLYEKGYGKDAAGIAMEAIRFAKDSRIDVVLVD 496

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259
           TAGR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ A+A  +
Sbjct: 497 TAGRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYS 550

Query: 260 ---------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                    G+++TK D    + G  I +      P+ F+G G+   DL+   AK
Sbjct: 551 QSANPHMIDGIVLTKFDTIDDKVGAAITMTYITGQPIVFVGTGQTYTDLKSLNAK 605


>gi|150006884|ref|YP_001301627.1| putative signal recognition protein [Parabacteroides distasonis
           ATCC 8503]
 gi|255016084|ref|ZP_05288210.1| putative signal recognition protein [Bacteroides sp. 2_1_7]
 gi|256842126|ref|ZP_05547631.1| signal recognition particle protein [Parabacteroides sp. D13]
 gi|262384367|ref|ZP_06077502.1| signal recognition particle protein [Bacteroides sp. 2_1_33B]
 gi|298377310|ref|ZP_06987263.1| signal recognition particle protein [Bacteroides sp. 3_1_19]
 gi|301308707|ref|ZP_07214659.1| signal recognition particle protein [Bacteroides sp. 20_3]
 gi|149935308|gb|ABR42005.1| putative signal recognition protein [Parabacteroides distasonis
           ATCC 8503]
 gi|256736442|gb|EEU49771.1| signal recognition particle protein [Parabacteroides sp. D13]
 gi|262294070|gb|EEY82003.1| signal recognition particle protein [Bacteroides sp. 2_1_33B]
 gi|298265724|gb|EFI07384.1| signal recognition particle protein [Bacteroides sp. 3_1_19]
 gi|300833231|gb|EFK63849.1| signal recognition particle protein [Bacteroides sp. 20_3]
          Length = 445

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 150/312 (48%), Gaps = 23/312 (7%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEG-ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           SE L    KL KG         EG IT+I  +  L D VR+ L D  +   +  +    +
Sbjct: 6   SERLDRSFKLLKG---------EGKITEINVAETLKD-VRKALLDADVNYKVAKSFTDTV 55

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGK 124
            E+ L +     V   +++    +++H  L  L      + +    P +IL+ G+ G GK
Sbjct: 56  KEKALGQNVLTSVKPSQLMV---KIVHDELASLMGGTAVDVNLQGNPAIILMSGLQGSGK 112

Query: 125 TTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT  GKL+  + +    K +LAA D +R AAI+QL++  ++            +   +A 
Sbjct: 113 TTFTGKLASLLKTKKNKKPLLAACDVYRPAAIEQLRVVGEQVGVPVYMELENKNPVEIAM 172

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A ++A+AK  DV+I+DTAGRL  +  +M  I  +   ++      P   L V+DA TGQ
Sbjct: 173 NAIREARAKGNDVVIVDTAGRLAIDEQMMNEIAAIKSAIQ------PDETLFVVDAMTGQ 226

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A+     F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F  
Sbjct: 227 DAVNTAREFNERLNFDGVVLTKLDGDTRGGAALSIRTVVDKPIKFVGTGEKMDALDIFHP 286

Query: 304 KDFSAVITGCLD 315
           +  +  I G  D
Sbjct: 287 ERMADRILGMGD 298


>gi|325696493|gb|EGD38383.1| signal recognition particle protein [Streptococcus sanguinis SK160]
          Length = 524

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 111/209 (53%), Gaps = 13/209 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           P +I++VG+ G GKTT  GKL+ K+   D    +M+AA D +R AAIDQLK    +   D
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEDNARPLMIAA-DIYRPAAIDQLKTLGQQI--D 157

Query: 169 FVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L    
Sbjct: 158 VPVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN-- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+
Sbjct: 215 ---PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G GE I D+E F     S+ I G  D
Sbjct: 272 KFTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|311113791|ref|YP_003985013.1| signal recognition particle protein [Rothia dentocariosa ATCC
           17931]
 gi|310945285|gb|ADP41579.1| signal recognition particle protein [Rothia dentocariosa ATCC
           17931]
          Length = 528

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 150/316 (47%), Gaps = 28/316 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLSEADIDATVREIRRALLDADVAVPVVREFAAHIKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++  N   +  P +I++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPSQQIVKIVNEELITILGGQTRRINMAKTG-PTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------SDAAALA 182
           +K +   G   +L A D  R  A+ QLK+  +R          G          D   +A
Sbjct: 121 AKWLKGQGHTPILVASDLQRPNAVTQLKVVGERAGVPVFAPHPGVTSEFDTPTGDPVQVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +   +A+AK  DV+I+DTAGRL  ++ LM    +  R ++  D   P  VL V+DA  G
Sbjct: 181 RDGVAEARAKLHDVVIVDTAGRLGVDAELM----QQARNIR--DAIEPQEVLFVIDAMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+     F+     TG++++K+DG ARGG  + +      P+ F   GE ++D E F 
Sbjct: 235 QDAVNTANAFNEGVDFTGVVLSKLDGDARGGAALSVASVTGKPIMFASTGENVDDFEQFH 294

Query: 303 AKDFSAVITGCLDYGE 318
               ++ I   LD G+
Sbjct: 295 PDRMASRI---LDMGD 307


>gi|258646849|ref|ZP_05734318.1| signal recognition particle protein [Dialister invisus DSM 15470]
 gi|260404288|gb|EEW97835.1| signal recognition particle protein [Dialister invisus DSM 15470]
          Length = 457

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 139/293 (47%), Gaps = 20/293 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL+    D+    RL     D    E+   L+ +D+   VA+  + ++  K   
Sbjct: 3   FENLGDKLQSAFKDLRGKGRLSESDIDSALREVRRALLEADVNFKVAKDFIAQVREKAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V + + ++L           S    VI++VG+ G GKTT  GKL
Sbjct: 63  EEVFGSLKPDQTVIKIVRDELTELLGGTQSKITMSSSGLT-VIMLVGLQGAGKTTTAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G K +LAA D +R AAI QL++   +            D   +A  A   A++
Sbjct: 122 ALMLKKRGKKPLLAACDVYRPAAIKQLEVLGQQVDVPVYRMPDNVDPVHIARYAVDAAKS 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  +  LMA     +R +K  + H PH +L VLD+ TGQ+A+     
Sbjct: 182 YGRDVVILDTAGRLTIDEKLMA----ELRNIKS-EVH-PHEILLVLDSMTGQDAVTTAGT 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE----GINDLEP 300
           F    G  G I+TKMDG ARGG  + I      P+  +GV E    G+ D  P
Sbjct: 236 FDENLGIDGTILTKMDGDARGGAALSIKAVTGKPIKMIGVSEKLDGGLEDFHP 288


>gi|328946321|gb|EGG40465.1| signal recognition particle protein [Streptococcus sanguinis
           SK1087]
          Length = 524

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|255321342|ref|ZP_05362502.1| signal recognition particle protein [Campylobacter showae RM3277]
 gi|255301495|gb|EET80752.1| signal recognition particle protein [Campylobacter showae RM3277]
          Length = 446

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 114/217 (52%), Gaps = 9/217 (4%)

Query: 99  LSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L+ P N  F   P    ++L+ G+ G GKTT   KL+  +     KV++AA D  R AA+
Sbjct: 79  LTTPGNQGFVFAPVAPTIVLMAGLQGSGKTTTTIKLANYLKLRKKKVLVAACDLQRLAAV 138

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+   +    +    E  +D   +A +A  +A++   DVL++DTAGRL  +  LM  I
Sbjct: 139 EQLRQLCEANEIELFSIENETDPLNVAKQALAKAKSGLYDVLLVDTAGRLAIDEALMKQI 198

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +   L+      PH +  V DA +GQ+ ++    F+     +G++++K D  ++GG  
Sbjct: 199 KDINSALE------PHEIFYVADAMSGQDGVKTASTFNDALKISGVVLSKFDSDSKGGVA 252

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           I I     IP+ F+G+GE + D+E F+ +   + I G
Sbjct: 253 IGIAKQLNIPLRFVGIGEKVGDMESFIPERIVSRIMG 289


>gi|324992911|gb|EGC24831.1| signal recognition particle protein [Streptococcus sanguinis SK405]
          Length = 524

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|225011681|ref|ZP_03702119.1| signal recognition particle protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004184|gb|EEG42156.1| signal recognition particle protein [Flavobacteria bacterium
           MS024-2A]
          Length = 442

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 112/220 (50%), Gaps = 13/220 (5%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL----SKKMSDAGLKVMLAAGDTFRSAAI 155
           S+    +   +P +IL+ G+ G GKTT  GKL    SKK S    K +L A D +R AAI
Sbjct: 88  SEAVELNLEEKPAIILMSGLQGSGKTTFTGKLALHLSKKHSK---KPLLVACDVYRPAAI 144

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           DQL + A++            D   +A  A + A+    DV++IDTAGRL  + +LM  I
Sbjct: 145 DQLGVVAEQVGVAIYEDREEKDPVKIALAALEIAKKDNHDVVLIDTAGRLAIDEVLMKEI 204

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +   +K      P   L V+DA TGQ+A+   + F+ +    G+I+TK+DG  RGG  
Sbjct: 205 KAIHSAVK------PSETLFVVDAMTGQDAVNTAKAFNDLLNFDGVILTKLDGDTRGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G GE +  ++ F  +  +  I G  D
Sbjct: 259 LTIKSVVNKPIKFIGTGEKMEAIDVFYPERMADRILGMGD 298


>gi|329943003|ref|ZP_08291777.1| signal recognition particle protein [Chlamydophila psittaci Cal10]
 gi|332287585|ref|YP_004422486.1| signal recognition particle protein [Chlamydophila psittaci 6BC]
 gi|313848159|emb|CBY17160.1| signal recognition particle protein [Chlamydophila psittaci RD1]
 gi|325507143|gb|ADZ18781.1| signal recognition particle protein [Chlamydophila psittaci 6BC]
 gi|328814550|gb|EGF84540.1| signal recognition particle protein [Chlamydophila psittaci Cal10]
 gi|328914836|gb|AEB55669.1| signal recognition particle protein [Chlamydophila psittaci 6BC]
          Length = 447

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 154/306 (50%), Gaps = 23/306 (7%)

Query: 22  ASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLTK 73
           +S S KL    + +++SRR+ ++ + E + ++   L+ +D+   V +    K+ E++L +
Sbjct: 3   SSLSQKLSSIFSSLVASRRITEENISEAIREVRLALLDADVNYHVVKSFIAKVKEKVLGE 62

Query: 74  RYAKDVS--VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              K VS   Q + Y   EL       L    + + S  P VIL+ G+ G GKTT   KL
Sbjct: 63  EVWKHVSPGQQFIRYLHEELTE----LLGDKTDLNTSGNPGVILLCGLQGTGKTTTCAKL 118

Query: 132 SKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +  + +     KV++   D  R AA++QL+    +T A+   SE G D   +  +A   A
Sbjct: 119 AAYVLEERKAKKVLVVPCDLKRFAAVEQLRNLISKTKAELYNSE-GQDPVKVVSQALDYA 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D+++IDTAGRLH + +LM  +  + +V      HA   +  V++   GQ+A+   
Sbjct: 178 KQEGHDLVLIDTAGRLHVDEVLMEELASIQKV-----SHACERLF-VMNLAMGQDAVSTA 231

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I++  DG AR G ++ +      P+ F G GE I DL PF A+  +  
Sbjct: 232 KAFDNYLDLTGVIISMTDGDARAGAVLSMKSLLGKPIKFEGCGERIQDLRPFNAESMADR 291

Query: 310 ITGCLD 315
           I G  D
Sbjct: 292 ILGMGD 297


>gi|297622324|ref|YP_003703758.1| signal recognition particle protein [Truepera radiovictrix DSM
           17093]
 gi|297163504|gb|ADI13215.1| signal recognition particle protein [Truepera radiovictrix DSM
           17093]
          Length = 439

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 143/298 (47%), Gaps = 22/298 (7%)

Query: 30  EGITDIISSR-RL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV--- 81
           +G+ D +  R RL +D VR  L ++   L+ +D+ + VA+   + +  K    +  +   
Sbjct: 10  QGVFDSLRGRGRLTEDEVRAALREVRVALLEADVSLEVARDFTKRVQEKAVGSETLMSLQ 69

Query: 82  --QRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
             QRV+     ++H  L+ L   K       +  +V L++G+ G GKTT  GKL+ K   
Sbjct: 70  PDQRVIA----IVHDELVELLGGKTAQPSLKNDANVWLLLGLQGAGKTTTAGKLAYKYKA 125

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            G + +L A DT R AA +QL++   +     +  E     A       +  +    D++
Sbjct: 126 QGRRPLLVAADTQRPAAREQLRVLGKQIGVPVLEVEDHETPARTRARLQEVLRTTYHDLV 185

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           I+DTAGRL  +  LM  + ++   L      +P   + V+DA TGQ +L   + F    G
Sbjct: 186 IVDTAGRLQIDEALMDAVAELKAEL------SPSETMLVIDAMTGQQSLPVAKTFDERVG 239

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            TGLIMTK+DG ARGG  +        P+YF G+ E I+ LE F     +  I G  D
Sbjct: 240 VTGLIMTKLDGDARGGAALSARHVTGKPIYFAGMSEKIDGLEAFHPDRIAGRILGMGD 297


>gi|197101205|ref|NP_001125759.1| signal recognition particle receptor subunit alpha [Pongo abelii]
 gi|55729093|emb|CAH91283.1| hypothetical protein [Pongo abelii]
          Length = 638

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R SA                    G DAA +A EA   A+ + 
Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPEKQGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 567

Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYVTSKPIVFVGTGQTYCDLRSLN 627

Query: 303 AK 304
           AK
Sbjct: 628 AK 629


>gi|253731855|ref|ZP_04866020.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253724407|gb|EES93136.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 455

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 135/269 (50%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V ++ ++ +  +    DV       Q+V+  V + + +++   +   N   
Sbjct: 39  LLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+++VG+ G GKTT  GKL+  M      K ML A D +R AAI+QL+    +  
Sbjct: 98  NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K   
Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKEIAK--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+ ++ V+D+ TGQ+A+   E F      TG+ +TK+DG  RGG  + I    + P+
Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+ E ++ LE F  +  ++ I G  D
Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300


>gi|194212972|ref|XP_001505146.2| PREDICTED: similar to Signal recognition particle receptor (docking
           protein) [Equus caballus]
          Length = 639

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 146/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 335 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 394

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 395 VQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 454

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSE-------------IGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+  A R SA                    G DAA +A EA   A+ + 
Sbjct: 455 CDTFRAGAVEQLRTHARRLSALHPPENHGGRTMVYLFEKGYGKDAAGIAMEAIAFARNQG 514

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 515 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 568

Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 569 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 628

Query: 303 AK 304
           AK
Sbjct: 629 AK 630


>gi|160872071|ref|ZP_02062203.1| signal recognition particle protein [Rickettsiella grylli]
 gi|159120870|gb|EDP46208.1| signal recognition particle protein [Rickettsiella grylli]
          Length = 451

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 29/311 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEEL------ 70
           F + + +LK    +I    RL++  ++E L ++    I +D+   V + I+E++      
Sbjct: 2   FDNLTARLKHSFKNIRGQGRLNEHNIKESLREVKKAFIEADVAYPVVKAIIEQVRQGAIG 61

Query: 71  --LTKRYAKDVSVQRVLYDVSELI---HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
             +T+  A   +  +++ D    I   H   + LS       +  P V+++ G+ G GKT
Sbjct: 62  QKVTESLAPGQAFIKIVNDTLTTIMGSHLSELNLS-------AQTPIVMMIAGLQGSGKT 114

Query: 126 TVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T + KL+  +     K V+L + D  R AAI QL+  A+ ++  F  S        +   
Sbjct: 115 TTVAKLAAWLKTQKNKSVLLTSTDIHRPAAILQLENLAENSNVLFHPSCASQTPTFIVQT 174

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+ K VDV+IIDTAGRLH +  +M  +  +  V        P   L VLD+  GQ+
Sbjct: 175 AIQTARNKGVDVVIIDTAGRLHIDDRMMEELRTIHTV------GNPIETLFVLDSMMGQD 228

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A++  + F+ V   +G+I++KMD  ARGG  + +      P+ F+G GE +  LEPF   
Sbjct: 229 AVKVAQGFNDVIPLSGIILSKMDADARGGAALSVKFMLGKPIKFIGSGEKVTALEPFYPD 288

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 289 RIASRILGMGD 299


>gi|49471597|gb|AAT66124.1| signal recognition particle [Mycoplasma arthritidis]
          Length = 401

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 109/204 (53%), Gaps = 9/204 (4%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAGDTFRSAAIDQ 157
           + P        P  I++VG+ G GKTT   KL+       L    +L   D +R AA +Q
Sbjct: 88  TNPIEISLKKIPTTIMMVGLQGSGKTTTAAKLATFFKKKKLCQNPLLVGDDIYRPAAREQ 147

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A +T  DF   E  +DA  +A EA K+A   + D++I+DTAGRL  +  LM    +
Sbjct: 148 LEQLAKQTQTDFFTKE-KNDAIFIAKEAIKRANDNRNDLVIVDTAGRLAIDENLM---DE 203

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +I + K + P     +L V+DA +GQ+ +   ++FH     +  I+TK+D  ARGG  + 
Sbjct: 204 LINIKKAIHPD---YILLVVDAMSGQDVINVAKIFHENLNLSATIITKLDSDARGGAALS 260

Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301
           I    ++P+ F+G GE ++ +E F
Sbjct: 261 ITHLLEVPIAFIGTGEKLSGIEIF 284


>gi|19553259|ref|NP_601261.1| signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
 gi|62390895|ref|YP_226297.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
 gi|21324828|dbj|BAB99451.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
 gi|41326234|emb|CAF20396.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
          Length = 547

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 140/282 (49%), Gaps = 26/282 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E + ++L   ++  +   
Sbjct: 38  LLEADVSLTVVRAFINRIKERAVGAEVSQALNPAQQVIKIVNEELVQILGGETRRLSL-A 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
            + P VI++ G+ G GKTT+ GKLSK +   G   ML A D  R  A+ QL+I  +R   
Sbjct: 97  KNPPTVIMLAGLQGAGKTTLAGKLSKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERAGV 156

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   TS D +  E+G+   D   +A    ++A+  + D++I+DTAGRL  +  LM 
Sbjct: 157 TTFAPDPGTSIDSLEHEMGTSHGDPVEVARAGIEEAKRTQHDIVIVDTAGRLGIDETLMT 216

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
               +   +       P  VL V+D+  GQ+A+   E F      TG+++TK+DG ARGG
Sbjct: 217 QARNIREAIN------PDEVLFVIDSMIGQDAVDTAEAFRDGVDFTGVVLTKLDGDARGG 270

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F   GE ++D + F  +  ++ I G  D
Sbjct: 271 AALSIREVTGKPIMFASTGEKLDDFDVFHPERMASRILGMGD 312


>gi|224009369|ref|XP_002293643.1| signal recognition particle-like protein [Thalassiosira pseudonana
           CCMP1335]
 gi|220971043|gb|EED89379.1| signal recognition particle-like protein [Thalassiosira pseudonana
           CCMP1335]
          Length = 368

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 144/301 (47%), Gaps = 30/301 (9%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE----ELLTKR 74
           +GF S  L     +T       LD  +++ ++ LL   ++  + AQ I E    +LL K+
Sbjct: 71  RGFFSNLLSTNRPLT----KSDLDPPLKQ-MQQLLTSKNVAPSTAQAICEVVERQLLGKK 125

Query: 75  YAKDVSVQR-VLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               V V+R V + + + + ++L P    +           P+ I+++G+NGVGK+T + 
Sbjct: 126 VGTLVGVKRAVRHALEDAVERILCPELGGIGGRAEIKRGKSPYTIVMIGINGVGKSTSLA 185

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++  +       +LAA DTFRS A++QL + A   S          D + +A  A  +A
Sbjct: 186 KIAYYLQSNQCNPLLAACDTFRSGAVEQLSVHASCLSLPLYHQGYAKDPSTVAKAAISKA 245

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV++IDTAGR+ NN  LM  + K++          P  VL V +A  G + + Q+
Sbjct: 246 TEDGNDVVLIDTAGRMQNNVPLMKALAKLVTETN------PDLVLFVCEALVGNDGMDQL 299

Query: 250 EMFHAV---AGTT----GLIMTKMDGTARGGGLIPIVVTH--KIPVYFLGVGEGINDLEP 300
            MF       G T    G+++TK D  +   G   + +TH   +P+ F G G+  N L+P
Sbjct: 300 TMFQKALTSGGHTRLIDGIVLTKFDTVSDKVG-AALTLTHLTGVPIAFCGTGQKYNHLKP 358

Query: 301 F 301
            
Sbjct: 359 L 359


>gi|296216603|ref|XP_002754616.1| PREDICTED: signal recognition particle receptor subunit alpha
           isoform 1 [Callithrix jacchus]
          Length = 637

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 333 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 392

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 393 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 452

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R SA                    G DAA +A EA   A+ + 
Sbjct: 453 CDTFRAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 512

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 513 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 566

Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 567 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 626

Query: 303 AK 304
           AK
Sbjct: 627 AK 628


>gi|294889453|ref|XP_002772820.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
 gi|239877370|gb|EER04636.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
          Length = 508

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 152/317 (47%), Gaps = 25/317 (7%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           ++S+  S +R L K  +S + +  E + + +          +E+   L+++D+ V    K
Sbjct: 6   LSSQLTSALRSLQKAASSLNEEDDEPLEECL----------KEIAKALLQADVNVKYVSK 55

Query: 66  IVEELLT--KRYA-----KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           + + + T  K Y      +  +V+++++D  EL+ K+L P   P       R +V++ VG
Sbjct: 56  LRQSIRTQMKLYEGAAINRHKTVRKLVFD--ELV-KLLTPSRAPRTLT-KGRSNVVMFVG 111

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT   K +      G KV L   DTFR+ A DQL+  A +    F  S   +D 
Sbjct: 112 LQGSGKTTSCTKYALYYQRRGWKVALVCADTFRAGAFDQLRQNATKALIPFYGSHTITDP 171

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A E  +  + ++ D++I+DT+GR H   + +    K +R   +        V+ V+D
Sbjct: 172 VQVASEGVELFKEERYDLIIVDTSGR-HKQELALFDEMKQVR---QWGSGEADDVIFVMD 227

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +  GQ    Q   F        +I+TK+DG A+GGG +  V     P+ F+G GE ++D 
Sbjct: 228 SHIGQACSAQAAAFSNAVDVGSVIITKLDGHAKGGGALSAVAATDSPIIFIGTGEHLDDF 287

Query: 299 EPFVAKDFSAVITGCLD 315
           E F  K F   + G  D
Sbjct: 288 ERFEVKGFVGRLLGMGD 304


>gi|289662764|ref|ZP_06484345.1| signal recognition particle protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 446

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 139/275 (50%), Gaps = 22/275 (8%)

Query: 39  RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q ++  V +
Sbjct: 9   RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 68

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   +   N +    P +IL+ G+ G GKTT +GKL+K + +   K VM+ + D 
Sbjct: 69  ELTAVMGAAAADLNLNVPA-PAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 127

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A++    F  S+       +   A   A+   VDVL++DTAGRL  ++
Sbjct: 128 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDA 187

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +M  I  +         HA   P   L V+DA TGQ+A    + F      TG+++TK 
Sbjct: 188 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 238

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           DG ARGG  + +      P+ F+G GE  + L+ F
Sbjct: 239 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 273


>gi|158425575|ref|YP_001526867.1| signal recognition particle protein [Azorhizobium caulinodans ORS
           571]
 gi|158332464|dbj|BAF89949.1| signal recognition particle protein [Azorhizobium caulinodans ORS
           571]
          Length = 511

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 143/274 (52%), Gaps = 13/274 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102
           E+   LI +D+ + V +   +++  +    +V  SV   Q V+  V +++ + L   + P
Sbjct: 33  EVRRALIEADVALDVVRSFTDKVRQRAVGVEVIKSVTPGQMVVKIVHDVLVETLGSDADP 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIW 161
            + + +  P  IL+VG+ G GKTT   K++K++++ G  +V++A+ DT R AA++QL   
Sbjct: 93  IDLN-APAPVPILMVGLQGSGKTTTTAKIAKRLTERGNRRVLMASLDTRRPAAMEQLATL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +   + +    G  A  +A  A   A+    DV+I+DTAGR+  +  LMA + ++  +
Sbjct: 152 GTQVEVNTLPIVPGQSAVQIAKRAMDAARFGNYDVVILDTAGRVTLDEALMAEVAEVKAI 211

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                   PH VL V D+ TGQ+A+   + F +    TG+++T+ DG  RGG  + +   
Sbjct: 212 TN------PHEVLLVADSLTGQDAVNTAKAFDSRVSITGIVLTRADGDGRGGAALSMRAV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+  LG GE ++ LE F  +  +  I G  D
Sbjct: 266 TGKPIKLLGTGEKMDGLEDFDPQRVAGRILGMGD 299


>gi|322385512|ref|ZP_08059156.1| signal recognition particle protein [Streptococcus cristatus ATCC
           51100]
 gi|321270250|gb|EFX53166.1| signal recognition particle protein [Streptococcus cristatus ATCC
           51100]
          Length = 522

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 104/206 (50%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +     
Sbjct: 101 PTVIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                   A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L +     
Sbjct: 161 FALGTEFPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELAD-VKALAQ----- 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ +L V+DA  GQ A      F+     TG+I+TK+DG  RGG  + +      P+ F 
Sbjct: 215 PNEILLVVDAMIGQEAANVAREFNNQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I D+E F     S  I G  D
Sbjct: 275 GTGEKITDIETFHPDRMSGRILGMGD 300


>gi|301782169|ref|XP_002926499.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           [Ailuropoda melanoleuca]
 gi|281338698|gb|EFB14282.1| hypothetical protein PANDA_016150 [Ailuropoda melanoleuca]
          Length = 638

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 394 VQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R SA                    G DAA +A EA   A+ + 
Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPENHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 567

Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 627

Query: 303 AK 304
           AK
Sbjct: 628 AK 629


>gi|30866|emb|CAA29608.1| unnamed protein product [Homo sapiens]
          Length = 638

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R SA                    G DAA +A EA   A+ + 
Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 567

Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 627

Query: 303 AK 304
           AK
Sbjct: 628 AK 629


>gi|58580944|ref|YP_199960.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425538|gb|AAW74575.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 494

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 22/275 (8%)

Query: 39  RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q ++  V +
Sbjct: 57  RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 116

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   +   N +    P ++L+ G+ G GKTT +GKL+K + +   K VM+ + D 
Sbjct: 117 ELTAVMGAAAADVNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 175

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A++    F  S+       +   A   A+   VDVL++DTAGRL  + 
Sbjct: 176 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDQ 235

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
           ++M  I  +         HA   P   L V+DA TGQ+A    + F      TG+++TK 
Sbjct: 236 VMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 286

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           DG ARGG  + +      P+ F+G GE  + L+ F
Sbjct: 287 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 321


>gi|311264318|ref|XP_003130105.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           isoform 2 [Sus scrofa]
          Length = 610

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 146/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E + +K   K + +   V   V + + + L
Sbjct: 306 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVASKLEGKVMGTFSTVTSTVKQALQESL 365

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 366 VQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 425

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R SA                    G DAA +A EA   A+ + 
Sbjct: 426 CDTFRAGAVEQLRTHTRRLSALHPPENHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 485

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 486 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 539

Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 540 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 599

Query: 303 AK 304
           AK
Sbjct: 600 AK 601


>gi|311264316|ref|XP_003130104.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           isoform 1 [Sus scrofa]
          Length = 638

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 146/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E + +K   K + +   V   V + + + L
Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVASKLEGKVMGTFSTVTSTVKQALQESL 393

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 394 VQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R SA                    G DAA +A EA   A+ + 
Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPENHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 567

Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 627

Query: 303 AK 304
           AK
Sbjct: 628 AK 629


>gi|260578971|ref|ZP_05846874.1| signal recognition particle protein [Corynebacterium jeikeium ATCC
           43734]
 gi|258602945|gb|EEW16219.1| signal recognition particle protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 515

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 138/282 (48%), Gaps = 26/282 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  ++ +  +    +VS      Q+V+  V+E + ++L   ++  N   
Sbjct: 26  LLEADVSLPVVRAFIKRIKERAAGAEVSEALNPAQQVIKIVNEELKEILGGETRRLNL-A 84

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
            H P VI++ G+ G GKTT+ GKL+  ++  G   ML A D  R  A+ QL+I  +R   
Sbjct: 85  KHPPTVIMLAGLQGAGKTTLAGKLALHLAKQGHTPMLVACDLQRPGAVQQLQIVGERAGV 144

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   TS D    E+G+   D   +A    ++A   + D++IIDTAGRL  +  LM 
Sbjct: 145 KTFAPDPGTSLDSHDHEMGTSHGDPVDVAQRGIEEAYRSQHDIVIIDTAGRLGIDEELM- 203

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              +  R ++  D   P  VL V+DA  GQ+A+   E F      TG+++TK+DG ARGG
Sbjct: 204 ---RQARNIR--DAVEPDEVLFVIDAMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGG 258

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F   GE   D + F     +  I G  D
Sbjct: 259 AALSIREVTGKPILFASTGEKQEDFDVFHPDRMANRILGMGD 300


>gi|194382530|dbj|BAG64435.1| unnamed protein product [Homo sapiens]
          Length = 610

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 306 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 365

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 366 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 425

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R SA                    G DAA +A EA   A+ + 
Sbjct: 426 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 485

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 486 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 539

Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 540 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 599

Query: 303 AK 304
           AK
Sbjct: 600 AK 601


>gi|154503296|ref|ZP_02040356.1| hypothetical protein RUMGNA_01120 [Ruminococcus gnavus ATCC 29149]
 gi|153795963|gb|EDN78383.1| hypothetical protein RUMGNA_01120 [Ruminococcus gnavus ATCC 29149]
          Length = 450

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 109/203 (53%), Gaps = 6/203 (2%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VI++ G+ G GKTT   KL+ K    G K +L A D +R AAI QL+I  ++   +    
Sbjct: 104 VIMMAGLQGAGKTTTTAKLAGKYKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSM 163

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              +  A +A  A + A+    +++I+DTAGRLH +  +MA + ++   +        H 
Sbjct: 164 GDKNKPADIAKAALEHARKNGNNIVILDTAGRLHIDEDMMAELQEIKGTVD------VHQ 217

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            + V+DA TGQ+A+     F+   G  G+I+TK+DG  RGG  + I      P+ ++G+G
Sbjct: 218 TILVVDAMTGQDAVNVAGSFNDKIGIDGVIVTKLDGDTRGGAALSIKAVTGCPILYVGMG 277

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E ++DLE F     ++ I G  D
Sbjct: 278 EKLSDLEQFYPDRMASRILGMGD 300


>gi|145296022|ref|YP_001138843.1| hypothetical protein cgR_1945 [Corynebacterium glutamicum R]
 gi|140845942|dbj|BAF54941.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 544

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 140/282 (49%), Gaps = 26/282 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E + ++L   ++  +   
Sbjct: 38  LLEADVSLTVVRAFINRIKERAVGAEVSQALNPAQQVIKIVNEELVQILGGETRRLSL-A 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
            + P VI++ G+ G GKTT+ GKLSK +   G   ML A D  R  A+ QL+I  +R   
Sbjct: 97  KNPPTVIMLAGLQGAGKTTLAGKLSKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERAGV 156

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   TS D +  E+G+   D   +A    ++A+  + D++I+DTAGRL  +  LM 
Sbjct: 157 TTFAPDPGTSIDSLEHEMGTSHGDPVEVARAGIEEAKRTQHDIVIVDTAGRLGIDETLMT 216

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
               +   +       P  VL V+D+  GQ+A+   E F      TG+++TK+DG ARGG
Sbjct: 217 QARNIREAIN------PDEVLFVIDSMIGQDAVDTAEAFRDGVDFTGVVLTKLDGDARGG 270

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F   GE ++D + F  +  ++ I G  D
Sbjct: 271 AALSIREVTGKPIMFASTGEKLDDFDVFHPERMASRILGMGD 312


>gi|109109214|ref|XP_001112588.1| PREDICTED: signal recognition particle receptor subunit alpha
           isoform 1 [Macaca mulatta]
          Length = 638

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 153/323 (47%), Gaps = 42/323 (13%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           TKG       + +G+    S  R D + V +++ D LI  ++   +A ++ E +  K   
Sbjct: 313 TKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 372

Query: 77  KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125
           K + +   V   V + + + L+ + +P           +     RP+V+   GVNGVGK+
Sbjct: 373 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKS 432

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172
           T + K+S  + + G  V++AA DTFR+ A++QL+    R SA                  
Sbjct: 433 TNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEK 492

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  
Sbjct: 493 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 546

Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMDG-TARGGGLIPIVVT 281
           VL V +A  G  A+ Q+  F      H++A T     G+++TK D    + G  I +   
Sbjct: 547 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYI 606

Query: 282 HKIPVYFLGVGEGINDLEPFVAK 304
              P+ F+G G+   DL    AK
Sbjct: 607 TSKPIVFVGTGQTYCDLRSLNAK 629


>gi|307108633|gb|EFN56873.1| hypothetical protein CHLNCDRAFT_21935 [Chlorella variabilis]
          Length = 629

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 133/274 (48%), Gaps = 29/274 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNW-- 105
           L+  L+  ++   +A K+ E + T    + + S  RV   V + + + L  +  P     
Sbjct: 349 LKKKLMERNVAEEIADKVTESVATSLEGRKLASFTRVSTAVQQAVEEALTRILTPKRSID 408

Query: 106 --------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                       +P+ I+ VGVNGVGK+T + K++  +   G+KVM+AA DTFRS A++Q
Sbjct: 409 VLREVKAVQAKGQPYTIVFVGVNGVGKSTNLAKVAYWLLQNGVKVMIAACDTFRSGAVEQ 468

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LK    R            D A +A+EA K AQ   +DVL++DTAGR+ +N  LM  +  
Sbjct: 469 LKTHCARLQVPLYERGYEKDPAKVAFEAAKAAQRSGIDVLLVDTAGRMQDNEPLMRALSN 528

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-----------TGLIMTKM 266
           +I +      + P  VL V +A  G +A+ Q+  F+                 G+++TK 
Sbjct: 529 LINL------NQPDLVLFVGEALVGNDAVDQLTKFNQRLADLCPDPTQRHLIDGIVLTKF 582

Query: 267 DG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           D    + G  + +V T   P+ F+G G+   DL+
Sbjct: 583 DTIDDKVGAALSMVYTSGAPIMFVGCGQTYVDLK 616


>gi|256827012|ref|YP_003150971.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Cryptobacterium curtum DSM 15641]
 gi|256583155|gb|ACU94289.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Cryptobacterium curtum DSM 15641]
          Length = 470

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 102/208 (49%), Gaps = 7/208 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P+VI++VG+ G GKTT   KL+  +       +L A D +R AA DQL+   D    
Sbjct: 97  SRIPNVIMLVGLQGSGKTTAAAKLAYLLKKRNRNPLLVACDVYRPAAADQLQTLGDEIDV 156

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                E G D  A+A E  + A     DV+I+DTAGRLH +  +MA    +       D 
Sbjct: 157 RVYRGE-GKDPVAIAREGVQDAIDHLRDVVIVDTAGRLHVDEDMMAEASAI------KDA 209

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+DA TGQ+ +     F       G+IM+KMDG ARGGG + +      P+ 
Sbjct: 210 VNPDQILMVVDAMTGQDVVNVAAAFAERVDFDGVIMSKMDGDARGGGALSVREVTGKPIK 269

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE  + LE F     +  I G  D
Sbjct: 270 FISAGEKPDSLEEFHPDRLAKRILGMGD 297


>gi|28572459|ref|NP_789239.1| signal recognition particle protein [Tropheryma whipplei TW08/27]
 gi|28410591|emb|CAD66977.1| signal recognition particle protein [Tropheryma whipplei TW08/27]
          Length = 446

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 139/272 (51%), Gaps = 31/272 (11%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELI-- 92
           D V  E+   L+ SD+   +AQ  V  +  +  +++          V +++++  EL+  
Sbjct: 28  DVVLSEVYKTLLDSDVSFEIAQAFVHRVRGRSMSQESLRAINPHKRVTQIVWE--ELVDL 85

Query: 93  ---HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
               K  +  S+ F       P +I++VG+ G GKT+  GKL+K + + G    L A D 
Sbjct: 86  LGHQKTALKFSRTF-------PTIIMLVGLQGSGKTSFAGKLAKWLMERGHTAALGACDL 138

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            R AA  QL+  A++  A  +  + G+   A+     K A+ K+  VLIIDTAGR++ +S
Sbjct: 139 QRPAAASQLQAVAEQAGASVLIPKSGNVLDAVKT-VVKTAREKQFSVLIIDTAGRMNADS 197

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +M  + ++ R+ K      PH  L V+D+ TGQ AL    +F      TG++M+K+D  
Sbjct: 198 DMMDQLSEIDRLAK------PHQTLLVVDSATGQEALNITRVFCQHLSVTGVVMSKLDSD 251

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + G  +   V+   P+ F  +GEG++DLE F
Sbjct: 252 VKAGAALS--VSSLRPIIFSCIGEGVDDLEQF 281


>gi|269795670|ref|YP_003315125.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sanguibacter
           keddieii DSM 10542]
 gi|269097855|gb|ACZ22291.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sanguibacter
           keddieii DSM 10542]
          Length = 527

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 152/319 (47%), Gaps = 31/319 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L     ++ +  RL     D    E+   L+ +D+ V V ++    +  +  +
Sbjct: 2   FATLSDRLTSTFKNLRTKGRLSEADIDATVREIRRALLDADVAVPVVREFTGTVRERALS 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   S+  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELVAILGGESRGLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS------------DAA 179
           +  +   G   +L A D  R  A+ QLK+  +R        + G+            D  
Sbjct: 121 ALNLRQQGHTPLLVAADLQRPNAVTQLKVVGERAGVPVYAPDAGNQGAEGQSGVSTGDPV 180

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +A    + A++++ DV+IIDTAGRL  ++ LM      IR     D  +P  +L V+DA
Sbjct: 181 TVARAGVETARSRQHDVVIIDTAGRLGVDAELMQQAAD-IR-----DATSPDEILFVIDA 234

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             GQ+A+   + F      TG++++K+DG ARGG  + +      P+ F   GE + D E
Sbjct: 235 MIGQDAVATAQAFAEGVSFTGVVLSKLDGDARGGAALSVARVTGQPILFASTGEKLTDFE 294

Query: 300 PFVAKDFSAVITGCLDYGE 318
            F     ++ I   LD G+
Sbjct: 295 VFHPDRMASRI---LDMGD 310


>gi|241764099|ref|ZP_04762136.1| signal recognition particle protein [Acidovorax delafieldii 2AN]
 gi|241366563|gb|EER61051.1| signal recognition particle protein [Acidovorax delafieldii 2AN]
          Length = 458

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +   K V+  +GD +R AAI+QLK    +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRRKKVLTVSGDVYRPAAIEQLKTVTSQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S        +A  A   A+    DVL++DTAGRL  + +LM  I  +   L    
Sbjct: 157 AEWFPSTPDQKPHDIAVAALDYARKHYFDVLLVDTAGRLAIDEVLMQEIKDLHATLN--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+
Sbjct: 214 ---PVETLFVVDAMQGQDAINTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQITGAPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GV E ++ LE F A+  +  I G  D
Sbjct: 271 KFAGVSEKLDGLEVFDAERHAGRILGMGD 299


>gi|291383611|ref|XP_002708642.1| PREDICTED: signal recognition particle receptor [Oryctolagus
           cuniculus]
          Length = 637

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 153/323 (47%), Gaps = 42/323 (13%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           TKG       + +G+    S  R D + V +++ D LI  ++   +A ++ E +  K   
Sbjct: 312 TKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 371

Query: 77  KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125
           K + +   V   V + + + L+ + +P           +     RP+V+   GVNGVGK+
Sbjct: 372 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKS 431

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172
           T + K+S  + + G  V++AA DTFR+ A++QL+    R SA                  
Sbjct: 432 TNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEK 491

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  
Sbjct: 492 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 545

Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVT 281
           VL V +A  G  A+ Q+  F      H++A T     G+++TK D    + G  I +   
Sbjct: 546 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYI 605

Query: 282 HKIPVYFLGVGEGINDLEPFVAK 304
              P+ F+G G+   DL    AK
Sbjct: 606 TSKPIVFVGTGQTYCDLRSLNAK 628


>gi|68536272|ref|YP_250977.1| signal recognition particle protein [Corynebacterium jeikeium K411]
 gi|68263871|emb|CAI37359.1| signal recognition particle protein [Corynebacterium jeikeium K411]
          Length = 532

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 138/282 (48%), Gaps = 26/282 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  ++ +  +    +VS      Q+V+  V+E + ++L   ++  N   
Sbjct: 38  LLEADVSLPVVRAFIKRIKERAAGAEVSEALNPAQQVIKIVNEELKEILGGETRRLNL-A 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR--- 164
            H P VI++ G+ G GKTT+ GKL+  ++  G   ML A D  R  A+ QL+I  +R   
Sbjct: 97  KHPPTVIMLAGLQGAGKTTLAGKLALHLAKQGHTPMLVACDLQRPGAVQQLQIVGERAGV 156

Query: 165 --------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                   TS D    E+G+   D   +A    ++A   + D++IIDTAGRL  +  LM 
Sbjct: 157 KTFAPDPGTSLDSHDHEMGTSHGDPVDVAQRGIEEAYRSQHDIVIIDTAGRLGIDEELM- 215

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              +  R ++  D   P  VL V+DA  GQ+A+   E F      TG+++TK+DG ARGG
Sbjct: 216 ---RQARNIR--DAVEPDEVLFVIDAMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGG 270

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F   GE   D + F     +  I G  D
Sbjct: 271 AALSIREVTGKPILFASTGEKQEDFDIFHPDRMANRILGMGD 312


>gi|332361212|gb|EGJ39016.1| signal recognition particle protein [Streptococcus sanguinis
           SK1056]
          Length = 524

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFSGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|328541720|ref|YP_004301829.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA, ffh family
           [polymorphum gilvum SL003B-26A1]
 gi|326411472|gb|ADZ68535.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA, ffh family
           [Polymorphum gilvum SL003B-26A1]
          Length = 520

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 155/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL--DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
           F S S +L  GI D ++ R    +  V E L ++   LI +D+ + V +   +++  +  
Sbjct: 2   FESLSDRL-SGILDKLTGRGALSESDVNEALREVRRALIEADVALPVVRSFTDKVRVRAV 60

Query: 76  AKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V  SV   Q V+  V + + +ML   ++P + + +  P  I++VG+ G GKTT   K
Sbjct: 61  GAEVVKSVTPGQMVVKIVHDQLVEMLGADAEPIDLN-APAPVAIMMVGLQGSGKTTTTAK 119

Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++++++     +V++A+ DT R AA +QLK+  ++   D +    G     +A  A + A
Sbjct: 120 IARRLATRDKRRVLMASLDTRRPAAQEQLKVLGEQNGIDTLPIVAGQGPVDIARRAIQAA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DV+++DTAGR+H +  LM  + ++           PH +L V DA TGQ+A+   
Sbjct: 180 RLGGYDVVMLDTAGRIHIDEALMHEMAEIKAATN------PHEILLVADALTGQDAVNLA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F    G TG+ +T+MDG  RGG  + +      PV  +G GE    LE F  +  +  
Sbjct: 234 TSFDERVGITGIALTRMDGDGRGGAALSMRAVTGKPVKIIGTGEKAEALEDFHPRRIADR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|119588088|gb|EAW67684.1| signal recognition particle receptor ('docking protein'), isoform
           CRA_a [Homo sapiens]
 gi|119588089|gb|EAW67685.1| signal recognition particle receptor ('docking protein'), isoform
           CRA_a [Homo sapiens]
          Length = 414

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 155/329 (47%), Gaps = 42/329 (12%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           TKG       + +G+    S  R D + V +++ D LI  ++   +A ++ E +  K   
Sbjct: 89  TKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 148

Query: 77  KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125
           K + +   V   V + + + L+ + +P           +     RP+V+   GVNGVGK+
Sbjct: 149 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKS 208

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172
           T + K+S  + + G  V++AA DTFR+ A++QL+    R SA                  
Sbjct: 209 TNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEK 268

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  
Sbjct: 269 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 322

Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVT 281
           VL V +A  G  A+ Q+  F      H++A T     G+++TK D    + G  I +   
Sbjct: 323 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYI 382

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
              P+ F+G G+   DL    AK   A +
Sbjct: 383 TSKPIVFVGTGQTYCDLRSLNAKAVVAAL 411


>gi|23308697|ref|NP_003130.2| signal recognition particle receptor subunit alpha isoform 1 [Homo
           sapiens]
 gi|20455516|sp|P08240|SRPR_HUMAN RecName: Full=Signal recognition particle receptor subunit alpha;
           Short=SR-alpha; AltName: Full=Docking protein alpha;
           Short=DP-alpha
 gi|12654649|gb|AAH01162.1| Signal recognition particle receptor (docking protein) [Homo
           sapiens]
 gi|14318624|gb|AAH09110.1| Signal recognition particle receptor (docking protein) [Homo
           sapiens]
 gi|15488908|gb|AAH13583.1| Signal recognition particle receptor (docking protein) [Homo
           sapiens]
 gi|119588090|gb|EAW67686.1| signal recognition particle receptor ('docking protein'), isoform
           CRA_b [Homo sapiens]
 gi|123981146|gb|ABM82402.1| signal recognition particle receptor ('docking protein') [synthetic
           construct]
 gi|123995977|gb|ABM85590.1| signal recognition particle receptor ('docking protein') [synthetic
           construct]
 gi|168277846|dbj|BAG10901.1| signal recognition particle receptor subunit alpha [synthetic
           construct]
 gi|189065456|dbj|BAG35295.1| unnamed protein product [Homo sapiens]
          Length = 638

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R SA                    G DAA +A EA   A+ + 
Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 567

Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 627

Query: 303 AK 304
           AK
Sbjct: 628 AK 629


>gi|188578077|ref|YP_001915006.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522529|gb|ACD60474.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 460

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 22/275 (8%)

Query: 39  RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q ++  V +
Sbjct: 23  RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 82

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   +   N +    P ++L+ G+ G GKTT +GKL+K + +   K VM+ + D 
Sbjct: 83  ELTAVMGAAAADVNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 141

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A++    F  S+       +   A   A+   VDVL++DTAGRL  + 
Sbjct: 142 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDQ 201

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
           ++M  I  +         HA   P   L V+DA TGQ+A    + F      TG+++TK 
Sbjct: 202 VMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 252

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           DG ARGG  + +      P+ F+G GE  + L+ F
Sbjct: 253 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 287


>gi|115476922|ref|NP_001062057.1| Os08g0480100 [Oryza sativa Japonica Group]
 gi|42408581|dbj|BAD09758.1| putative signal recognition particle receptor [Oryza sativa
           Japonica Group]
 gi|42409015|dbj|BAD10268.1| putative signal recognition particle receptor [Oryza sativa
           Japonica Group]
 gi|113624026|dbj|BAF23971.1| Os08g0480100 [Oryza sativa Japonica Group]
 gi|125561923|gb|EAZ07371.1| hypothetical protein OsI_29622 [Oryza sativa Indica Group]
 gi|215678702|dbj|BAG95139.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 137/278 (49%), Gaps = 28/278 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104
           L+D L+  ++   +A+K+ E +      K + S  R+   V   + + L+ +  P     
Sbjct: 345 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSID 404

Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                       +P+VI+ VGVNGVGK+T + K++  +    L V LAA DTFRS A++Q
Sbjct: 405 ILRDVHAAKERGKPYVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFRSGAVEQ 464

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A R            D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K
Sbjct: 465 LRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSK 524

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-------AVAGTT---GLIMTKMD 267
           +I +      ++P  VL V +A  G +A+ Q+  F+       AV  T    G+++TK D
Sbjct: 525 LINL------NSPDLVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFD 578

Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               + G  + +V     PV F+G G+   DL+    K
Sbjct: 579 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 616


>gi|23007753|ref|ZP_00049485.1| COG0541: Signal recognition particle GTPase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 358

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 7/203 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  IL+VG+ G GKTT   K+++++S     +V+LA+ DT R AA++QL + A +   + 
Sbjct: 95  PVAILMVGLQGSGKTTTTAKIARRLSSRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVES 154

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G  A  +A  A + A+    DV+++DTAGR   +  LM    ++    K      
Sbjct: 155 LPIVAGQSAVQIAKRAMEAARLGGFDVVMLDTAGRTTVDEGLMNEAAEVKAATK------ 208

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V DA TGQ+A+     F    G TG+++T+MDG +RGG  + +      P+  +
Sbjct: 209 PHEVLLVADALTGQDAVNTARAFDQRLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLV 268

Query: 290 GVGEGINDLEPFVAKDFSAVITG 312
           GVGE ++ LE F  +  +  I G
Sbjct: 269 GVGEKVDALEEFHPQRVANRILG 291


>gi|295424842|ref|NP_001171313.1| signal recognition particle receptor subunit alpha isoform 2 [Homo
           sapiens]
          Length = 610

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 306 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 365

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 366 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 425

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R SA                    G DAA +A EA   A+ + 
Sbjct: 426 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 485

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 486 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 539

Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 540 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 599

Query: 303 AK 304
           AK
Sbjct: 600 AK 601


>gi|116254274|ref|YP_770112.1| signal recognition particle protein (fifty-four homolog) [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258922|emb|CAK10031.1| putative signal recognition particle protein (fifty-four homolog)
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 528

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT   K++ ++S     KV++A+ DT R AA +QL+    + + D 
Sbjct: 100 PVVVMMVGLQGSGKTTTSAKIAHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM    +M  + KR +PH 
Sbjct: 160 LPIISGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMV---EMADIKKRSNPH- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              +L V D+ TGQ+A+     F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 216 --EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE +++LE F  +  +  I G  D
Sbjct: 274 GVGEKMSELEEFHPRRIADRILGMGD 299


>gi|222640745|gb|EEE68877.1| hypothetical protein OsJ_27689 [Oryza sativa Japonica Group]
          Length = 1103

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 150/324 (46%), Gaps = 38/324 (11%)

Query: 3    NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            N   + +   W   + K  A  ++  K  I   + +          L+D L+  ++   +
Sbjct: 788  NSGASQKKKGWFSSMFKSIAGNNVLEKSDIQPALKA----------LKDRLMTKNVAEEI 837

Query: 63   AQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRP 111
            A+K+ E +      K + S  R+   V   + + L+ +  P                 +P
Sbjct: 838  AEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVHAAKERGKP 897

Query: 112  HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            +VI+ VGVNGVGK+T + K++  +    L V LAA DTFRS A++QL+  A R       
Sbjct: 898  YVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFRSGAVEQLRTHARRLQIPIFE 957

Query: 172  SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                 D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K+I +      ++P 
Sbjct: 958  KGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINL------NSPD 1011

Query: 232  SVLQVLDATTGQNALRQVEMFH-------AVAGTT---GLIMTKMDG-TARGGGLIPIVV 280
             VL V +A  G +A+ Q+  F+       AV  T    G+++TK D    + G  + +V 
Sbjct: 1012 LVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFDTIDDKVGAALSMVY 1071

Query: 281  THKIPVYFLGVGEGINDLEPFVAK 304
                PV F+G G+   DL+    K
Sbjct: 1072 ISGAPVMFVGCGQSYTDLKKLNVK 1095


>gi|168029678|ref|XP_001767352.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681416|gb|EDQ67843.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 591

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 17/206 (8%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+ I+ VGVNGVGK+T + K++  +    +KVM+AA DTFRS A++QL+  A R     
Sbjct: 384 RPYTIVFVGVNGVGKSTNLAKVAYWLQQHDIKVMMAACDTFRSGAVEQLRTHARRLQIPI 443

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D A +A +A   ++  K DV++IDTAGR+ +N  LM  + K+I +      + 
Sbjct: 444 FQRGYERDPAVVARDAIYDSKRTKQDVVLIDTAGRMQDNEPLMRALSKLINM------NG 497

Query: 230 PHSVLQVLDATTGQNALRQVEMFH----------AVAGTTGLIMTKMD-GTARGGGLIPI 278
           P  VL V +A  G + + Q+  F+                G+++TK D    + G  + +
Sbjct: 498 PDLVLFVGEALVGNDGVHQLTQFNQKLADLSTSSQTQSIDGILLTKFDTNNDKVGAALSM 557

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAK 304
           V T   PV F+G G+   DL+    K
Sbjct: 558 VYTSGAPVMFVGCGQNYTDLKKLNVK 583


>gi|157828091|ref|YP_001494333.1| signal recognition particle protein [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165932791|ref|YP_001649580.1| signal recognition particle protein [Rickettsia rickettsii str.
           Iowa]
 gi|157800572|gb|ABV75825.1| signal recognition particle protein [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165907878|gb|ABY72174.1| signal recognition particle, subunit FFH/SRP54 [Rickettsia
           rickettsii str. Iowa]
          Length = 449

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 150/290 (51%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89
           I++  ++D  +R+ +   L+ SD+ + V +  + E+  K   ++V  SV   Q ++  + 
Sbjct: 21  ILTEAQIDVAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P V  L+VG+ G GKTT  GKL+ ++ +   KV+L + D
Sbjct: 80  EEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASGKLALRLRNQNKKVLLVSLD 139

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL I A+    + +    G     +   A  +A+    DV+I DTAGR   +
Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQID 199

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M     + ++++      P   L V+D+ TGQ+A+     F+     +GLI++++DG
Sbjct: 200 KAMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            ++GG  + +    K P+ FL  GE + DLE F A+  ++ I   LD G+
Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRI---LDMGD 300


>gi|294627001|ref|ZP_06705591.1| signal recognition particle protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598663|gb|EFF42810.1| signal recognition particle protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 458

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 140/275 (50%), Gaps = 22/275 (8%)

Query: 39  RRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  ++ +RE + ++   L+ +D+ + V Q ++E +  +   ++V       Q ++  V +
Sbjct: 21  RLTEENIREAIREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   +   N +    P ++L+ G+ G GKTT +GKL+K + +   K VM+ + D 
Sbjct: 81  ELTAVMGAAATDLNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADI 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A++    F  S+       +   A   A+   VDVL++DTAGRL  ++
Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDA 199

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +M  I  +         HA   P   L V+DA TGQ+A    + F      TG+++TK 
Sbjct: 200 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           DG ARGG  + +      P+ F+G GE  + L+ F
Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 285


>gi|157414996|ref|YP_001482252.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385960|gb|ABV52275.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747634|gb|ADN90904.1| Signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931910|gb|EFV10865.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 445

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V+L+ G+ G GKTT   KL+  +     KV++AA D  R AA++QL+   +    
Sbjct: 92  SKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEI 151

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           +    E   D   +A EA K+A++  VDVL++DTAGRL  +  LM  +  +  VL     
Sbjct: 152 ELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKAVKDVLN---- 207

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V DA +GQ+ ++    F+     +G+I++K D   +GG  + I     IP+ 
Sbjct: 208 --PDEIFYVADAMSGQDGVKTAASFNEALNISGVILSKFDADTKGGVALGIAKQIGIPLR 265

Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312
           F+GVGE + DLE F+     + I G
Sbjct: 266 FIGVGEKVADLEVFIPDRIVSRIMG 290


>gi|296536512|ref|ZP_06898602.1| signal recognition particle protein [Roseomonas cervicalis ATCC
           49957]
 gi|296263168|gb|EFH09703.1| signal recognition particle protein [Roseomonas cervicalis ATCC
           49957]
          Length = 461

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 158/311 (50%), Gaps = 24/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRR--LDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
           F + S KL  G+ D +  R    +D V E L ++   L+ +D+ + V + +V ++  +  
Sbjct: 2   FEALSGKLN-GVFDRLRRRGALTEDNVNEALREVRIALLEADVALPVVKDLVNKVRERAV 60

Query: 76  AKDV-----SVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            ++V       Q+V+  V++ + + L     +  +   N + +  P  IL++G+ G GKT
Sbjct: 61  GQEVIRSVSPAQQVIKIVNDCLVEALGGGEGVEQTPGLNLNAAA-PIAILMIGLQGSGKT 119

Query: 126 TVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T  GK++ ++ +    KV+LA+ D  R AA  QL+  A +     +    G     +A  
Sbjct: 120 TTSGKIALRLRARDKKKVLLASLDVHRPAAQLQLETLAKQAGVASLPIIQGQTPLQIAAR 179

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+ +  DV+I+DTAGRL  +  LMA + ++    K      PH  L V+DA TGQ+
Sbjct: 180 AMQVARGELYDVVILDTAGRLSIDEALMAEVAEVKAATK------PHESLLVVDAMTGQD 233

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+    +F+   G TG++MT++DG ARGG  + +      P+  LG GE ++ LE F   
Sbjct: 234 AVNTARIFNERVGLTGIVMTRVDGDARGGAALSMRAVTGAPIKLLGAGEKLDALEDFHPD 293

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 294 RIAGRILGMGD 304


>gi|84622872|ref|YP_450244.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84366812|dbj|BAE67970.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 458

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 22/275 (8%)

Query: 39  RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q ++  V +
Sbjct: 21  RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   +   N +    P ++L+ G+ G GKTT +GKL+K + +   K VM+ + D 
Sbjct: 81  ELTAVMGAAAADVNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A++    F  S+       +   A   A+   VDVL++DTAGRL  + 
Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDQ 199

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
           ++M  I  +         HA   P   L V+DA TGQ+A    + F      TG+++TK 
Sbjct: 200 VMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           DG ARGG  + +      P+ F+G GE  + L+ F
Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 285


>gi|296216605|ref|XP_002754617.1| PREDICTED: signal recognition particle receptor subunit alpha
           isoform 2 [Callithrix jacchus]
          Length = 609

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 305 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 364

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 365 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 424

Query: 147 GDTFRSAAIDQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+               A RT         G DAA +A EA   A+ + 
Sbjct: 425 CDTFRAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 484

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 485 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 538

Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 539 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 598

Query: 303 AK 304
           AK
Sbjct: 599 AK 600


>gi|242009196|ref|XP_002425377.1| Signal recognition particle 54 kDa protein, putative [Pediculus
           humanus corporis]
 gi|212509171|gb|EEB12639.1| Signal recognition particle 54 kDa protein, putative [Pediculus
           humanus corporis]
          Length = 501

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P++I+ VG+ G GKTT   KL+        K  L   DTFR+ A DQLK  A +    F
Sbjct: 95  KPNIIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQLKQNATKARIPF 154

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D   +A +  +  + +  +++I+DT+GR      L   + ++   +K      
Sbjct: 155 YGSYTEVDPVVIAQDGVEMFKKEGFEIIIVDTSGRHKQEESLFEEMLQVSNAIK------ 208

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P +++ V+DAT GQ    Q   F        +I+TK+DG A+GGG +  V     P+ F+
Sbjct: 209 PDNIIFVMDATIGQACESQARAFKEKVNVGSVIITKLDGHAKGGGALSAVAATNSPIIFI 268

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D E F  K F + + G  D
Sbjct: 269 GTGEHIDDFESFKTKPFISKLLGMGD 294


>gi|315638652|ref|ZP_07893826.1| signal recognition particle protein [Campylobacter upsaliensis
           JV21]
 gi|315481276|gb|EFU71906.1| signal recognition particle protein [Campylobacter upsaliensis
           JV21]
          Length = 445

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 138/257 (53%), Gaps = 7/257 (2%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E L+  L+++D+   V ++++  +        +  ++ L  + + + ++L    K   + 
Sbjct: 30  ETLKKSLLKADVHHKVTKELLSLIEDDVKKNGIGQKQFLEAIKKNLEEILSISGKNQGFI 89

Query: 107 FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           FS +P  ++L+VG+ G GKTT   KL+  +     KV++AA D  R AA++QL+   +  
Sbjct: 90  FSSKPPTIVLMVGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEAN 149

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             +    E  ++   +A EA ++A++   DVL++DTAGRL  +  LM   G++  V   L
Sbjct: 150 EIELFYIENETNPIKVAGEALQKAKSGLFDVLLVDTAGRLAIDEALM---GELKEVKASL 206

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           +   P  +  V DA +GQ+ ++    F+   G +G+I++K D   +GG  + I     IP
Sbjct: 207 N---PDEIFYVADAMSGQDGVKTASSFNEALGLSGVILSKFDADTKGGVALGIARQVNIP 263

Query: 286 VYFLGVGEGINDLEPFV 302
           + F+GVGE + DLE F+
Sbjct: 264 LRFIGVGEKVADLEIFI 280


>gi|328874643|gb|EGG23008.1| signal recognition particle 54 kDa subunit [Dictyostelium
           fasciculatum]
          Length = 502

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 141/276 (51%), Gaps = 16/276 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDV--SELIHKMLMPLS 100
           +E+ + L R+D+ +++  K+ + +  +    + A  ++ +R++  V   ELI K+L P  
Sbjct: 33  KEVGNALSRADVSMSLIIKMRKNIQAQIKLDQMAAGLNKRRIIRKVVFDELI-KLLDPGV 91

Query: 101 KPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            P  W  +  + ++I+ VG+ G GKTT + KL+      G    +   DTFR+ A  QL+
Sbjct: 92  TP--WKPTKGKSNIIMFVGLQGAGKTTSVTKLAHFYKRKGWNTAMVCADTFRAGAFAQLQ 149

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A +    F  SE   D  A A +  +  + +  +++I+DT+GR    S L   + ++ 
Sbjct: 150 HNATKAKIPFYGSESEKDPVAAAKKGVEIFRKEGAEIIIVDTSGRHKQESELFKEMSEIE 209

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            V++      P +V+ V+D++ GQ A  Q   F        +I+TKMDG ++GGG I  V
Sbjct: 210 TVIQ------PDNVIFVMDSSIGQAAYDQAMAFKTSVKVGSVIITKMDGNSKGGGAISAV 263

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              + P+ F+G GE I DLE F    F + + G  D
Sbjct: 264 AATQSPIIFIGSGEHIPDLEIFNPTSFVSKLLGLGD 299


>gi|296876507|ref|ZP_06900558.1| signal recognition particle protein [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432500|gb|EFH18296.1| signal recognition particle protein [Streptococcus parasanguinis
           ATCC 15912]
          Length = 523

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    + +   
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLVKEEKARPLMIAADIYRPAAIDQLKTLGQQINVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                   A  +  +  +QA+A   D ++IDTAGRL  +  LM  +    R +K L    
Sbjct: 161 FSLGTEVPAVEIVRQGLEQARANHNDYVLIDTAGRLQIDEKLMGEL----RDVKAL--VE 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ +L V+DA  GQ A      F+     TG+I+TK+DG  RGG  + +      P+ F 
Sbjct: 215 PNEILLVVDAMIGQEAANVAREFNEQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I D+E F     S  I G  D
Sbjct: 275 GTGEKITDIETFHPDRMSGRILGMGD 300


>gi|327470046|gb|EGF15510.1| signal recognition particle protein [Streptococcus sanguinis SK330]
          Length = 524

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +  +  +      
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSDVKSLAN---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|327334314|gb|EGE76028.1| signal recognition particle protein [Propionibacterium acnes
           HL097PA1]
          Length = 528

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    ++   L+ +D+ ++V ++ V  +  + + +++S      Q+++  V+E + ++L 
Sbjct: 28  DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P ++++ G+ G GKTT+ GKL++   + G   +LAA D  R  A+ Q
Sbjct: 88  GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        E G+   D   +A +A  +A+ K  DV+IIDTAGRL  ++ +MA 
Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +           P   L V+DA  GQ+A+     F    G  G+++TK+DG ARGG 
Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GEG+ D + F     ++ I   LD G+
Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301


>gi|314919228|gb|EFS83059.1| signal recognition particle protein [Propionibacterium acnes
           HL050PA1]
          Length = 528

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    ++   L+ +D+ ++V ++ V  +  + + +++S      Q+++  V+E + ++L 
Sbjct: 28  DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P ++++ G+ G GKTT+ GKL++   + G   +LAA D  R  A+ Q
Sbjct: 88  GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        E G+   D   +A +A  +A+ K  DV+IIDTAGRL  ++ +MA 
Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKVYDVVIIDTAGRLGVDAEMMAQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +           P   L V+DA  GQ+A+     F    G  G+++TK+DG ARGG 
Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GEG+ D + F     ++ I   LD G+
Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301


>gi|322380662|ref|ZP_08054814.1| signal recognition particle protein [Helicobacter suis HS5]
 gi|321146984|gb|EFX41732.1| signal recognition particle protein [Helicobacter suis HS5]
          Length = 444

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 141/271 (52%), Gaps = 11/271 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMP-LSKPFN 104
           EEL+  L+R+D+   V +++V+ +  K  AK +  Q+    + E L+  + +P  S  F 
Sbjct: 30  EELKKALLRNDVHHKVVKELVKNIEAKTKAKGIGKQQFFDALQESLLEILSVPGCSSGFV 89

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           +  +  P ++L+ G+ G GKTT   KL+  +     KV+L A D  R AA++QL++   +
Sbjct: 90  YAPTP-PTIVLMCGLQGGGKTTTCAKLAHYLKTRHKKVLLVACDLERLAAVEQLQVLGTQ 148

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +    E       +A  A ++A+  + DV+I+D+AGRL  +  LM  +  +  ++K 
Sbjct: 149 IGVEVFYQE--GQILEIAKGALERAKEGQFDVVIVDSAGRLAIDQNLMQELKALKDLIK- 205

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P     V DA +GQ+ +R    FH   G +G++++K D  ++GG  + I    +I
Sbjct: 206 -----PLETFYVADALSGQDGVRSAGTFHTEIGLSGVVLSKFDSDSKGGVALGIAHQLQI 260

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE I DL+ F+    +  + G  D
Sbjct: 261 PLRFIGHGEKIPDLDIFMPDRIANRLMGAGD 291


>gi|193216691|ref|YP_001999933.1| signal recognition particle [Mycoplasma arthritidis 158L3-1]
 gi|193002014|gb|ACF07229.1| signal recognition particle [Mycoplasma arthritidis 158L3-1]
          Length = 441

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 109/204 (53%), Gaps = 9/204 (4%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAGDTFRSAAIDQ 157
           + P        P  I++VG+ G GKTT   KL+       L    +L   D +R AA +Q
Sbjct: 88  TNPIEISLKKIPTTIMMVGLQGSGKTTTAAKLATFFKKKKLCQNPLLVGDDIYRPAAREQ 147

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A +T  DF   E  +DA  +A EA K+A   + D++I+DTAGRL  +  LM    +
Sbjct: 148 LEQLAKQTQTDFFTKE-KNDAIFIAKEAIKRANDNRNDLVIVDTAGRLAIDENLM---DE 203

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +I + K + P     +L V+DA +GQ+ +   ++FH     +  I+TK+D  ARGG  + 
Sbjct: 204 LINIKKAIHPD---YILLVVDAMSGQDVINVAKIFHENLNLSATIITKLDSDARGGAALS 260

Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301
           I    ++P+ F+G GE ++ +E F
Sbjct: 261 ITHLLEVPIAFIGTGEKLSGIEIF 284


>gi|241206757|ref|YP_002977853.1| signal recognition particle protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860647|gb|ACS58314.1| signal recognition particle protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 525

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT   K++ +++     KV++A+ DT R AA +QL+    + + D 
Sbjct: 100 PVVIMMVGLQGSGKTTTSAKIAHRLTTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM    +M  + KR +PH 
Sbjct: 160 LPVISGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMV---EMADIKKRSNPH- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              +L V D+ TGQ+A+     F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 216 --EILLVADSLTGQDAVNLARSFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE +++LE F  +  +  I G  D
Sbjct: 274 GVGEKMSELEEFHPRRIADRILGMGD 299


>gi|87199425|ref|YP_496682.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135106|gb|ABD25848.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 491

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 140/269 (52%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V ++ ++++  +   + V  SV   Q+V+  V++ +  ML   +   + + 
Sbjct: 38  LLEADVALPVVRRFIDQVSEQAVGQSVLKSVTPGQQVVKIVNDALVDMLGGGTAELDLNA 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VI++VG+ G GKTT   K+ K + +  G KV++A+ D  R AA +QL +  ++  
Sbjct: 98  AP-PVVIMMVGLQGSGKTTSTAKIGKLLKEKQGKKVLMASLDVNRPAAQEQLAVLGEQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +    G     +A  A   A+ + VDVL++DTAGRLH +  LM  +  +  V     
Sbjct: 157 VATLPIVAGQQPVDIATRAVNAAKLQAVDVLLLDTAGRLHVDQALMDEMKAVAAV----- 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D+ TGQ+A+   + F      TG+++T+MDG ARGG  + +      P+
Sbjct: 212 -SVPRETLLVVDSLTGQDAVNVAQSFSGEVDLTGVVLTRMDGDARGGAALSMRAVTGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F   GE ++ +EPF  +  +  I G  D
Sbjct: 271 KFAATGEKLDAIEPFHPERVAGRILGMGD 299


>gi|283455254|ref|YP_003359818.1| signal recognition particle, subunit FFH/SRP54 [Bifidobacterium
           dentium Bd1]
 gi|283101888|gb|ADB08994.1| ffh Signal recognition particle, subunit FFH/SRP54 [Bifidobacterium
           dentium Bd1]
          Length = 541

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 143/298 (47%), Gaps = 32/298 (10%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKML- 96
           DG   E+   L+ +D+ + V +     +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 24  DGTIREIRRALLDADVALDVVRSFTGRIRERALGTEVSQALNPAQQVVKIVNEELTDVLG 83

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             + +P N+   + P +I++ G+ G GKTT+ GKL   + D+G   +L A D  R  A+ 
Sbjct: 84  AGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVT 142

Query: 157 QLKIWADRTSADFVCSEIG----------------SDAAALAYEAFKQAQAKKVDVLIID 200
           QL++  +R        E G                 D   +A ++   A+ K  D +IID
Sbjct: 143 QLQVVGERAGVPVYAPEKGVQSAGGEAVASPGLTTGDPVKVARDSVAFARQKLYDTVIID 202

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  LM    +  R ++  D   P+ +L V+DA  GQ+A++  + F      TG
Sbjct: 203 TAGRLGVDEELM----RQARDIR--DAVQPNEILFVIDAMIGQDAVQTAKAFDEGVDFTG 256

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           ++++K+DG ARGG  + +      P+ F   GEG+ D E F     ++ I   LD G+
Sbjct: 257 VVLSKLDGDARGGAALSVASVTGKPILFASTGEGLKDFEVFHPDRMASRI---LDMGD 311


>gi|182417247|ref|ZP_02948600.1| signal recognition particle protein [Clostridium butyricum 5521]
 gi|237668219|ref|ZP_04528203.1| signal recognition particle protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378893|gb|EDT76406.1| signal recognition particle protein [Clostridium butyricum 5521]
 gi|237656567|gb|EEP54123.1| signal recognition particle protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 452

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 133/268 (49%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  V  + +K    +V       Q+V+  V+E +  ++       +++ 
Sbjct: 39  LLEADVNYKVVKTFVSNVSSKCVGSEVLESLTPGQQVIKIVNEELTNLMGGSESKLSYN- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P VI++VG+ G GKTT+ GKL+  +     K +L A D +R AAI QL++   +   
Sbjct: 98  SSGPTVIMLVGLQGAGKTTMCGKLALNLRKDNKKPLLVACDIYRPAAIKQLEVVGKQIEI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                        +A      A+    +++IIDTAGRLH +  LM  +  +   +K    
Sbjct: 158 PVFSMGDKVSPVDIAKAGIAHARDNGNNIVIIDTAGRLHIDEDLMQELKDIKENVK---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   E F+     +G+I+TK+DG  RGG  + I      P+ 
Sbjct: 214 --PSEILLVVDSMTGQDAVNVAENFNNDLDLSGVILTKLDGDTRGGAALSIKSIINKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++G+GE +ND E F     ++ I G  D
Sbjct: 272 YVGLGEKMNDFEVFHPDRMASRILGMGD 299


>gi|188579898|ref|YP_001923343.1| signal recognition particle protein [Methylobacterium populi BJ001]
 gi|179343396|gb|ACB78808.1| signal recognition particle protein [Methylobacterium populi BJ001]
          Length = 520

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  IL+VG+ G GKTT   K++++++     +V+LA+ DT R AA++QL + A +   + 
Sbjct: 100 PVAILMVGLQGSGKTTTTAKIARRLNQREKRRVLLASLDTRRPAAMEQLAVLAKQVEVES 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G  A  +A  A + A+    DV+++DTAGR   +  LMA   ++           
Sbjct: 160 LPIVAGQSAVQIARRAMEAARLGGFDVVMLDTAGRTTVDEGLMAEAAEVKAATN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V DA TGQ+A+     F    G TG+++T+MDG +RGG  + +      P+  +
Sbjct: 214 PHEVLLVADALTGQDAVNTARAFDQRLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLV 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE ++ LE F  +  +  I G  D
Sbjct: 274 GVGEKVDALEEFHPQRVANRILGMGD 299


>gi|149198633|ref|ZP_01875677.1| signal recognition particle [Lentisphaera araneosa HTCC2155]
 gi|149138348|gb|EDM26757.1| signal recognition particle [Lentisphaera araneosa HTCC2155]
          Length = 469

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 127/239 (53%), Gaps = 26/239 (10%)

Query: 88  VSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           V +++H+ L  L  ++    + S  P VI++VG++G GKTT   KL+    +   KV+LA
Sbjct: 74  VVKVVHEELTRLMGTEEAEVNTSGNPAVIMMVGLHGAGKTTTCAKLAHFYKNQKKKVLLA 133

Query: 146 AGDTFRSAAIDQLK---------IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           A D +R AAIDQL+         +++DR++ D V          +A  A   A+++  D+
Sbjct: 134 ACDVYRPAAIDQLEALGKDIQVPVFSDRSTPDVV---------QIAQNAMNTAKSEGHDL 184

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +I+D AGRL  +  +   + ++IRV +R +P     +L   D+  GQ A+     F    
Sbjct: 185 VILDMAGRLQIDEDM---VQELIRVKERFNPG---EILLTADSALGQEAVSVATHFDQAL 238

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             +G+++TK+DG ARGG  + +      P+ F+  GE ++DLE F  +  ++ I G  D
Sbjct: 239 NISGIVLTKLDGDARGGAALSMRKVTGKPIKFITSGEKVSDLEKFRPEGMASRILGMGD 297


>gi|261880314|ref|ZP_06006741.1| signal recognition particle protein [Prevotella bergensis DSM
           17361]
 gi|270333004|gb|EFA43790.1| signal recognition particle protein [Prevotella bergensis DSM
           17361]
          Length = 451

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 7/196 (3%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT 165
            S +P V+L+ G+ G GKTT  GKL+  + +  G   +L A D +R AAI+QLK+  ++ 
Sbjct: 95  LSGKPAVVLMSGLQGSGKTTFSGKLANLLKNKRGKNPLLVACDVYRPAAIEQLKVVGEQV 154

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                  E   +   +A  A ++A+AK  DV+I+DTAGRL  +  +M  I  +   +   
Sbjct: 155 GVPVYTEEGNKNVNEIALHAIQEAKAKGNDVVIVDTAGRLAVDEDMMNEIASLKEAI--- 211

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              +P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I      P
Sbjct: 212 ---SPDETLFVVDSMTGQDAVNTAKEFNDRIDFDGVVLTKLDGDTRGGAALSIRTVVTKP 268

Query: 286 VYFLGVGEGINDLEPF 301
           + F+G GE +  L+ F
Sbjct: 269 IKFIGTGEKMEALDVF 284


>gi|332360439|gb|EGJ38250.1| signal recognition particle protein [Streptococcus sanguinis SK355]
          Length = 524

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +   QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLDQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|157803379|ref|YP_001491928.1| coproporphyrinogen III oxidase [Rickettsia canadensis str. McKiel]
 gi|157784642|gb|ABV73143.1| coproporphyrinogen III oxidase [Rickettsia canadensis str. McKiel]
          Length = 449

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 150/290 (51%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89
           I++  ++D  +R+ +   L+ SD+ + V +  + E+  K   ++V  SV   Q ++  + 
Sbjct: 21  ILTEAQIDATMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P V  L+VG+ G GKTT  GKL+ ++ +   KV+L + D
Sbjct: 80  EEMINLLAASESETKLNLNSKPPVNFLMVGLQGSGKTTASGKLALRLKNHNKKVLLVSLD 139

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL I A+    + +    G     +   A  +A+    DV+I DTAGR   +
Sbjct: 140 TYRPAAQEQLAILANLVQINSLPIVQGEKPLDIVKRAIAEAKLSAYDVVIYDTAGRTQID 199

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M     + ++++      P   L V+D+ TGQ+A+     F+     +GLI++++DG
Sbjct: 200 KEMMEEALSIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLEISGLILSRIDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            ++GG  + +    K P+ FL  GE + DLE F AK  ++ I   LD G+
Sbjct: 254 DSKGGAALSVKYITKKPIKFLSNGEKLTDLEEFDAKRLASRI---LDMGD 300


>gi|160901803|ref|YP_001567384.1| signal recognition particle protein [Petrotoga mobilis SJ95]
 gi|160359447|gb|ABX31061.1| signal recognition particle protein [Petrotoga mobilis SJ95]
          Length = 439

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 154/310 (49%), Gaps = 28/310 (9%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---- 70
           +KLT  F + S K K      +S + + D VRE ++  L+ +D+   V +++++ +    
Sbjct: 7   KKLTGVFKNLSGKGK------LSEKNIKDAVRE-VKLSLLEADVHYKVVKELIDRVKEEA 59

Query: 71  ----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
               + +    D    R++ D  +LI   LM   +      S  P  I++ G+ G GKT+
Sbjct: 60  IGSKVLESLTPDQEFIRIVRD--DLIE--LMGGKENNKITISRNPGFIMLTGLQGSGKTS 115

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL-KIWADRTSADFVCSEIGSDAAALAYEA 185
              KL+      G   +L A DT+R AAIDQL ++  D     F    +  +A  +  E+
Sbjct: 116 TAAKLANFYKKKGKNPLLVAADTYRPAAIDQLVQLGEDIGIPVFTGDRV--NALKIIEES 173

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K A+    D++I+DTAGRLH +  +M  +  + +++       P  +L V+D+  GQ+A
Sbjct: 174 KKYAEKLLHDIVIVDTAGRLHIDEKMMEELENIKKLIN------PDEILMVVDSMVGQDA 227

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +   + F+     +G +++K+DG +RGG +I I      PV  +GVGE I+DLE F    
Sbjct: 228 VNSAKEFNDKLDLSGFVVSKLDGDSRGGVIISIRYITGKPVKLVGVGEKIDDLEEFYPDR 287

Query: 306 FSAVITGCLD 315
           +   I G  D
Sbjct: 288 YVGRILGMGD 297


>gi|13357648|ref|NP_077922.1| signal recognition particle [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762113|ref|YP_001752172.1| signal recognition particle protein [Ureaplasma parvum serovar 3
           str. ATCC 27815]
 gi|183508525|ref|ZP_02958049.1| signal recognition particle protein [Ureaplasma parvum serovar 14
           str. ATCC 33697]
 gi|11275264|pir||C82936 signal recognition particle UU091 [imported] - Ureaplasma
           urealyticum
 gi|6899044|gb|AAF30497.1|AE002108_10 signal recognition particle [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827690|gb|ACA32952.1| signal recognition particle protein [Ureaplasma parvum serovar 3
           str. ATCC 27815]
 gi|182675962|gb|EDT87867.1| signal recognition particle protein [Ureaplasma parvum serovar 14
           str. ATCC 33697]
          Length = 448

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 146/295 (49%), Gaps = 28/295 (9%)

Query: 38  SRRLDDG--VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR------------ 83
           S++L +   V E++++LL  S+I +A+    V  L+ K++ K++  +             
Sbjct: 15  SKKLKNATIVEEDIKELL--SEIRIALLDADVNLLVVKKFIKNIKEKTIGLYVEANQKPA 72

Query: 84  --VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GL 140
             VL  + + + ++L   +KP N   S     I++VG+ G GKTT  GKL+    +    
Sbjct: 73  DLVLKIIKDELVEILGKENKPVNTAKSQLK--IMMVGLQGSGKTTTTGKLANYFKNKYNK 130

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K +L A D +R AAIDQL+  A +   DF   E       +   A  +A   + +++I+D
Sbjct: 131 KPLLVAADIYRPAAIDQLRTLAKQVRVDF-WEEGTQRPDLIVKNALNKADENENNLIIVD 189

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  N  LM    +++ V K L+P     V  V+DA  GQ+ +     F+     TG
Sbjct: 190 TAGRLQTNEELMQ---ELVNVKKTLNPD---EVFLVVDAMAGQDIINVATEFNNWLKLTG 243

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+D  AR G ++ +     IP+ F G GE I  ++ F  +  +  I G  D
Sbjct: 244 IIVTKLDSDARAGAVLSLTSLLNIPIKFTGTGEKIGSIDSFYPERMADRILGLGD 298


>gi|42408582|dbj|BAD09759.1| putative signal recognition particle receptor [Oryza sativa
           Japonica Group]
 gi|42409016|dbj|BAD10269.1| putative signal recognition particle receptor [Oryza sativa
           Japonica Group]
          Length = 610

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 137/278 (49%), Gaps = 28/278 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104
           L+D L+  ++   +A+K+ E +      K + S  R+   V   + + L+ +  P     
Sbjct: 331 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSID 390

Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                       +P+VI+ VGVNGVGK+T + K++  +    L V LAA DTFRS A++Q
Sbjct: 391 ILRDVHAAKERGKPYVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFRSGAVEQ 450

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A R            D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K
Sbjct: 451 LRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSK 510

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-------AVAGTT---GLIMTKMD 267
           +I +      ++P  VL V +A  G +A+ Q+  F+       AV  T    G+++TK D
Sbjct: 511 LINL------NSPDLVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFD 564

Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               + G  + +V     PV F+G G+   DL+    K
Sbjct: 565 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 602


>gi|260948082|ref|XP_002618338.1| hypothetical protein CLUG_01797 [Clavispora lusitaniae ATCC 42720]
 gi|238848210|gb|EEQ37674.1| hypothetical protein CLUG_01797 [Clavispora lusitaniae ATCC 42720]
          Length = 529

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 138/282 (48%), Gaps = 31/282 (10%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-LSK 101
           D V ++  D LI  +I    A+ I E++ T+  +K V+V      ++E + K+L P +S 
Sbjct: 241 DEVSKKFNDQLISKNIAPPTAKAITEKIKTRLGSKTVTVNAFKQALTEELTKILTPNVST 300

Query: 102 PFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              ++         RP+VI VVGVNGVGK+T + KL+  +    L V++ A DTFRS A+
Sbjct: 301 DLLYEIKKSSAAKKRPYVISVVGVNGVGKSTNLAKLAYWLLQNNLNVLICACDTFRSGAV 360

Query: 156 DQLKIWAD-----RTSADFVCSEI--------GSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QLK+          S D  C           G      A  A + A  +  D+++IDTA
Sbjct: 361 EQLKVHVKNLKRLNASNDTECKIDLFEKGYGGGDHVVKTAKSAIQHATTEGYDIVLIDTA 420

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-- 260
           GR H+N+ LMA + K        D   P  ++ V +A  G +++ Q   F+   G     
Sbjct: 421 GRTHSNAKLMAPLKKF------GDAADPDKIIMVGEALVGTDSVEQAINFNNAFGNKRNL 474

Query: 261 --LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLE 299
              I++K+D      G +I +V+   +P+ F+G G+   D++
Sbjct: 475 DFFIISKVDTVGDLVGAMINMVMATNVPILFVGTGQTYTDIK 516


>gi|57237011|ref|YP_178813.1| signal recognition particle protein [Campylobacter jejuni RM1221]
 gi|148926674|ref|ZP_01810355.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|57165815|gb|AAW34594.1| signal recognition particle protein [Campylobacter jejuni RM1221]
 gi|145845193|gb|EDK22288.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|315058172|gb|ADT72501.1| Signal recognition particle, subunit Ffh SRP54 [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 445

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V+L+ G+ G GKTT   KL+  +     KV++AA D  R AA++QL+   +    
Sbjct: 92  SKPPTVVLMAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEI 151

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           +    E   D   +A EA K+A++  VDVL++DTAGRL  +  LM  +  +  VL     
Sbjct: 152 ELFFIENEKDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKAVKDVLN---- 207

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V DA +GQ+ ++    F+     +G+I++K D   +GG  + I     IP+ 
Sbjct: 208 --PDEIFYVADAMSGQDGVKTAASFNEALNISGVILSKFDADTKGGVALGIAKQIGIPLR 265

Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312
           F+GVGE + DLE F+     + I G
Sbjct: 266 FIGVGEKVADLEVFIPDRIVSRIMG 290


>gi|28378333|ref|NP_785225.1| signal recognition particle protein Ffh [Lactobacillus plantarum
           WCFS1]
 gi|254556541|ref|YP_003062958.1| signal recognition particle protein Ffh [Lactobacillus plantarum
           JDM1]
 gi|28271168|emb|CAD64073.1| signal recognition particle protein Ffh [Lactobacillus plantarum
           WCFS1]
 gi|254045468|gb|ACT62261.1| signal recognition particle protein Ffh [Lactobacillus plantarum
           JDM1]
          Length = 484

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 150/309 (48%), Gaps = 23/309 (7%)

Query: 20  GFASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            F   + +L++ +T++     IS   L   +RE +   L+ +D+   V +  V+ +  + 
Sbjct: 2   AFEGLTERLQKAMTNLRRKGKISESDLRATMRE-IRLALLEADVNFTVVKDFVKTVRERA 60

Query: 75  YAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               V       Q+++  V E + K +   + P N      P VI++ G+ G GKTT +G
Sbjct: 61  LGAKVLEGLNPAQQIVKIVDEELTKTMGEKAVPLNKS-PKIPTVIMMAGLQGAGKTTTVG 119

Query: 130 KLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAF 186
           KL+ K+ ++   + ++ A D +R AAI+QL+        D    ++G+D     +  +  
Sbjct: 120 KLALKLKNEQDARPLMIAADVYRPAAIEQLQQVG--RQIDVPVFQLGTDVDPVEIVRQGM 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            QA+    D + IDTAGRL  +  LM  +  +  ++       P  +L V+DA TGQNA+
Sbjct: 178 AQAKENHNDYVFIDTAGRLQIDEQLMNELANIKDLVH------PDEILLVIDAMTGQNAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              E F+     TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     
Sbjct: 232 NTAEGFNDKLDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMTDLDVFHPDRM 291

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 292 ADRILGMGD 300


>gi|313839842|gb|EFS77556.1| signal recognition particle protein [Propionibacterium acnes
           HL086PA1]
          Length = 528

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    ++   L+ +D+ ++V ++ V  +  + + +++S      Q+++  V+E + ++L 
Sbjct: 28  DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P ++++ G+ G GKTT+ GKL++   + G   +LAA D  R  A+ Q
Sbjct: 88  GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        E G+   D   +A +A  +A+ K  DV+IIDTAGRL  ++ +MA 
Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +           P   L V+DA  GQ+A+     F    G  G+++TK+DG ARGG 
Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GEG+ D + F     ++ I   LD G+
Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301


>gi|54026131|ref|YP_120373.1| putative signal recognition particle protein [Nocardia farcinica
           IFM 10152]
 gi|54017639|dbj|BAD59009.1| putative signal recognition particle protein [Nocardia farcinica
           IFM 10152]
          Length = 520

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 146/318 (45%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL     D    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTGALKDLRGKGRLSPADIDATCREIRLALLEADVALPVVRGFIARIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++  N   +  P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKIVNEELVGILGGETRRLNLAKTP-PTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177
           +K +   G + +L A D  R  A+ QL++  +R          G+              D
Sbjct: 121 AKYLKGQGHQPLLVACDLQRPGAVTQLQVVGERAGVPVFAPHPGTSVGGGENPLGITAAD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A     +A+ K+ D++I+DTAGRL  +  LM      IR     D   P   L VL
Sbjct: 181 PVEVARGGVAEARNKQYDIVIVDTAGRLGIDEELMRQAAS-IR-----DAVQPDETLFVL 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F    G TG+++TK+DG ARGG  + +      P+ F   GE + D
Sbjct: 235 DAMIGQDAVTTAEAFRDGVGFTGVVLTKLDGDARGGAALSVRNVTGAPIMFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     ++ I G  D
Sbjct: 295 FDVFHPDRMASRILGMGD 312


>gi|50842924|ref|YP_056151.1| signal recognition particle protein [Propionibacterium acnes
           KPA171202]
 gi|289426463|ref|ZP_06428206.1| signal recognition particle protein [Propionibacterium acnes SK187]
 gi|295130981|ref|YP_003581644.1| signal recognition particle protein [Propionibacterium acnes SK137]
 gi|50840526|gb|AAT83193.1| signal recognition particle protein [Propionibacterium acnes
           KPA171202]
 gi|289153191|gb|EFD01909.1| signal recognition particle protein [Propionibacterium acnes SK187]
 gi|291375525|gb|ADD99379.1| signal recognition particle protein [Propionibacterium acnes SK137]
 gi|313773595|gb|EFS39561.1| signal recognition particle protein [Propionibacterium acnes
           HL074PA1]
 gi|313794051|gb|EFS42075.1| signal recognition particle protein [Propionibacterium acnes
           HL110PA1]
 gi|313801438|gb|EFS42689.1| signal recognition particle protein [Propionibacterium acnes
           HL110PA2]
 gi|313807882|gb|EFS46363.1| signal recognition particle protein [Propionibacterium acnes
           HL087PA2]
 gi|313811647|gb|EFS49361.1| signal recognition particle protein [Propionibacterium acnes
           HL083PA1]
 gi|313813544|gb|EFS51258.1| signal recognition particle protein [Propionibacterium acnes
           HL025PA1]
 gi|313816834|gb|EFS54548.1| signal recognition particle protein [Propionibacterium acnes
           HL059PA1]
 gi|313819667|gb|EFS57381.1| signal recognition particle protein [Propionibacterium acnes
           HL046PA2]
 gi|313822227|gb|EFS59941.1| signal recognition particle protein [Propionibacterium acnes
           HL036PA1]
 gi|313823540|gb|EFS61254.1| signal recognition particle protein [Propionibacterium acnes
           HL036PA2]
 gi|313825867|gb|EFS63581.1| signal recognition particle protein [Propionibacterium acnes
           HL063PA1]
 gi|313829547|gb|EFS67261.1| signal recognition particle protein [Propionibacterium acnes
           HL063PA2]
 gi|313831388|gb|EFS69102.1| signal recognition particle protein [Propionibacterium acnes
           HL007PA1]
 gi|313835000|gb|EFS72714.1| signal recognition particle protein [Propionibacterium acnes
           HL056PA1]
 gi|314914659|gb|EFS78490.1| signal recognition particle protein [Propionibacterium acnes
           HL005PA4]
 gi|314920862|gb|EFS84693.1| signal recognition particle protein [Propionibacterium acnes
           HL050PA3]
 gi|314924621|gb|EFS88452.1| signal recognition particle protein [Propionibacterium acnes
           HL036PA3]
 gi|314930540|gb|EFS94371.1| signal recognition particle protein [Propionibacterium acnes
           HL067PA1]
 gi|314954300|gb|EFS98706.1| signal recognition particle protein [Propionibacterium acnes
           HL027PA1]
 gi|314957421|gb|EFT01524.1| signal recognition particle protein [Propionibacterium acnes
           HL002PA1]
 gi|314962015|gb|EFT06116.1| signal recognition particle protein [Propionibacterium acnes
           HL002PA2]
 gi|314963595|gb|EFT07695.1| signal recognition particle protein [Propionibacterium acnes
           HL082PA1]
 gi|314968573|gb|EFT12671.1| signal recognition particle protein [Propionibacterium acnes
           HL037PA1]
 gi|314974263|gb|EFT18359.1| signal recognition particle protein [Propionibacterium acnes
           HL053PA1]
 gi|314976732|gb|EFT20827.1| signal recognition particle protein [Propionibacterium acnes
           HL045PA1]
 gi|314978890|gb|EFT22984.1| signal recognition particle protein [Propionibacterium acnes
           HL072PA2]
 gi|314986450|gb|EFT30542.1| signal recognition particle protein [Propionibacterium acnes
           HL005PA2]
 gi|314990810|gb|EFT34901.1| signal recognition particle protein [Propionibacterium acnes
           HL005PA3]
 gi|315079449|gb|EFT51442.1| signal recognition particle protein [Propionibacterium acnes
           HL053PA2]
 gi|315081324|gb|EFT53300.1| signal recognition particle protein [Propionibacterium acnes
           HL078PA1]
 gi|315083525|gb|EFT55501.1| signal recognition particle protein [Propionibacterium acnes
           HL027PA2]
 gi|315087205|gb|EFT59181.1| signal recognition particle protein [Propionibacterium acnes
           HL002PA3]
 gi|315089379|gb|EFT61355.1| signal recognition particle protein [Propionibacterium acnes
           HL072PA1]
 gi|315095403|gb|EFT67379.1| signal recognition particle protein [Propionibacterium acnes
           HL038PA1]
 gi|315099284|gb|EFT71260.1| signal recognition particle protein [Propionibacterium acnes
           HL059PA2]
 gi|315100482|gb|EFT72458.1| signal recognition particle protein [Propionibacterium acnes
           HL046PA1]
 gi|315106740|gb|EFT78716.1| signal recognition particle protein [Propionibacterium acnes
           HL030PA1]
 gi|315109083|gb|EFT81059.1| signal recognition particle protein [Propionibacterium acnes
           HL030PA2]
 gi|327328336|gb|EGE70098.1| signal recognition particle protein [Propionibacterium acnes
           HL096PA2]
 gi|327329799|gb|EGE71555.1| signal recognition particle protein [Propionibacterium acnes
           HL096PA3]
 gi|327444120|gb|EGE90774.1| signal recognition particle protein [Propionibacterium acnes
           HL043PA2]
 gi|327445001|gb|EGE91655.1| signal recognition particle protein [Propionibacterium acnes
           HL043PA1]
 gi|327446484|gb|EGE93138.1| signal recognition particle protein [Propionibacterium acnes
           HL013PA2]
 gi|327451930|gb|EGE98584.1| signal recognition particle protein [Propionibacterium acnes
           HL092PA1]
 gi|327455035|gb|EGF01690.1| signal recognition particle protein [Propionibacterium acnes
           HL087PA3]
 gi|327457677|gb|EGF04332.1| signal recognition particle protein [Propionibacterium acnes
           HL083PA2]
 gi|328752240|gb|EGF65856.1| signal recognition particle protein [Propionibacterium acnes
           HL020PA1]
 gi|328755133|gb|EGF68749.1| signal recognition particle protein [Propionibacterium acnes
           HL087PA1]
 gi|328758089|gb|EGF71705.1| signal recognition particle protein [Propionibacterium acnes
           HL025PA2]
 gi|328760087|gb|EGF73666.1| signal recognition particle protein [Propionibacterium acnes
           HL099PA1]
 gi|332675861|gb|AEE72677.1| signal recognition particle protein [Propionibacterium acnes 266]
          Length = 528

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    ++   L+ +D+ ++V ++ V  +  + + +++S      Q+++  V+E + ++L 
Sbjct: 28  DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P ++++ G+ G GKTT+ GKL++   + G   +LAA D  R  A+ Q
Sbjct: 88  GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        E G+   D   +A +A  +A+ K  DV+IIDTAGRL  ++ +MA 
Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +           P   L V+DA  GQ+A+     F    G  G+++TK+DG ARGG 
Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GEG+ D + F     ++ I   LD G+
Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301


>gi|78065151|ref|YP_367920.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           sp. 383]
 gi|77965896|gb|ABB07276.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           sp. 383]
          Length = 455

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTAGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVLI+DTAGRL  + ++M  I  +   LK      
Sbjct: 164 FPSTPDQKPVDIAIAAVDWAKRHYHDVLIVDTAGRLGIDEVMMQEIAALHGTLK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|22537142|ref|NP_687993.1| signal recognition particle protein Ffh [Streptococcus agalactiae
           2603V/R]
 gi|25011071|ref|NP_735466.1| hypothetical protein gbs1017 [Streptococcus agalactiae NEM316]
 gi|76787075|ref|YP_329698.1| signal recognition particle protein [Streptococcus agalactiae A909]
 gi|76797794|ref|ZP_00780060.1| signal recognition particle protein [Streptococcus agalactiae
           18RS21]
 gi|77405715|ref|ZP_00782802.1| signal recognition particle protein [Streptococcus agalactiae H36B]
 gi|77412008|ref|ZP_00788337.1| signal recognition particle protein [Streptococcus agalactiae
           CJB111]
 gi|77413611|ref|ZP_00789797.1| signal recognition particle protein [Streptococcus agalactiae 515]
 gi|22534004|gb|AAM99865.1|AE014236_19 signal recognition particle protein Ffh [Streptococcus agalactiae
           2603V/R]
 gi|23095470|emb|CAD46676.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562132|gb|ABA44716.1| signal recognition particle protein [Streptococcus agalactiae A909]
 gi|76586870|gb|EAO63362.1| signal recognition particle protein [Streptococcus agalactiae
           18RS21]
 gi|77160320|gb|EAO71445.1| signal recognition particle protein [Streptococcus agalactiae 515]
 gi|77161964|gb|EAO72946.1| signal recognition particle protein [Streptococcus agalactiae
           CJB111]
 gi|77175711|gb|EAO78493.1| signal recognition particle protein [Streptococcus agalactiae H36B]
          Length = 521

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + M+ A D +R AAIDQLK    + +   
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEDNARPMMIAADIYRPAAIDQLKTLGSQINVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                   A  +  +  +QA+  + D ++IDTAGRL  ++ LM  +  +  + +      
Sbjct: 161 FDMGTNHSAVEIVTKGLEQARENRNDYVLIDTAGRLQIDATLMQELHDVKAIAQ------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ +L V+D+  GQ A    E F+     +G+++TK+DG  RGG  + +      P+ F 
Sbjct: 215 PNEILLVVDSMIGQEAANVAEEFNRQLSISGVVLTKIDGDTRGGAALSVREITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I D+E F     ++ I G  D
Sbjct: 275 GTGEKITDIETFHPDRMASRILGMGD 300


>gi|291519525|emb|CBK74746.1| signal recognition particle protein [Butyrivibrio fibrisolvens
           16/4]
          Length = 446

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 145/307 (47%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++ S  RL +  V+  L+++   L+ +D+   V ++    +  +   
Sbjct: 3   FDSLSEKLQGVFKNLRSKGRLSEADVKAALKEVKMALLEADVNFKVVKQFTNTVTERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q V+  V+E +  ++        +        I++VG+ G GKTT   KL
Sbjct: 63  SDVMNGLNPGQMVIKIVNEELVNLMGSEVTDITYGTGGAITTIMMVGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G K +L A D +R AAI+QL+I   +   +            +A EA   A+ 
Sbjct: 123 AGKVKQRGKKPLLVACDIYRPAAIEQLQINGKKQGVEVFSLGDKEKPVKIAKEAMDYAKK 182

Query: 192 KKVDVLIIDTAGRLHNNSILM---AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
              DV+I DTAGRLH +  +M   A I   I +L         + + V+DA TGQ+A+  
Sbjct: 183 NGFDVVIFDTAGRLHIDEDMMNELASIKSNIDIL---------NTILVVDAMTGQDAVNV 233

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+I+TK+DG  RGG  + I      P+ + G+GE ++DLE F     ++
Sbjct: 234 SSTFDEKIGIDGVIITKLDGDTRGGAALSIKAVTGKPILYAGMGEKLSDLEQFHPDRMAS 293

Query: 309 VITGCLD 315
            I G  D
Sbjct: 294 RILGMGD 300


>gi|326692469|ref|ZP_08229474.1| signal recognition particle protein [Leuconostoc argentinum KCTC
           3773]
          Length = 491

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 131/271 (48%), Gaps = 17/271 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+     +K V  +  K    D+       Q+V+  V++ +   +   + P N   
Sbjct: 39  LLEADVNYDTVKKFVANVREKASGADILEGLNPAQQVVKIVNDELTATMGEEAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P +I++ G+ G GKTT + KL+ K+ ++   + +L A D +R AAIDQL+I      
Sbjct: 98  QKIPTIIMMAGLQGAGKTTTVAKLAYKLKTEEKARPLLIAADVYRPAAIDQLEILG--RD 155

Query: 167 ADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            D    ++G+D     +  +   +A   K D + IDTAGRL  + +LM  +  +  + + 
Sbjct: 156 LDIPVFQLGTDVDPREIVRQGLAKAAENKNDYVFIDTAGRLQIDEVLMQELKDVAEIAQ- 214

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  +L  +DA TGQNA    + F      TG+++TK+DG  RGG  + I      
Sbjct: 215 -----PDEILLTVDAMTGQNAAETAKGFAEALDLTGVVLTKLDGDTRGGAALSIRDVTGK 269

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE   DL+ F     ++ I G  D
Sbjct: 270 PIKFVGQGEKPTDLDVFYPDRMASRILGMGD 300


>gi|319745019|gb|EFV97347.1| signal recognition particle protein [Streptococcus agalactiae ATCC
           13813]
          Length = 521

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + M+ A D +R AAIDQLK    + +   
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEDNARPMMIAADIYRPAAIDQLKTLGSQINVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                   A  +  +  +QA+  + D ++IDTAGRL  ++ LM  +  +  + +      
Sbjct: 161 FDMGTNHSAVEIVTKGLEQARENRNDYVLIDTAGRLQIDATLMQELHDVKAIAQ------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ +L V+D+  GQ A    E F+     +G+++TK+DG  RGG  + +      P+ F 
Sbjct: 215 PNEILLVVDSMIGQEAANVAEEFNRQLSISGVVLTKIDGDTRGGAALSVREITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I D+E F     ++ I G  D
Sbjct: 275 GTGEKITDIETFHPDRMASRILGMGD 300


>gi|3265154|gb|AAC24713.1| signal recognition particle [Streptomyces lividans]
          Length = 550

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 142/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++++  +    +VS      Q+VL  V+E +  +L 
Sbjct: 62  DATAREIRIALLEADVALPVVRAFMKKVKERSLGAEVSKALNPAQQVLKIVNEELVGILG 121

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL   + + G   +L A D  R  A++Q
Sbjct: 122 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGHWLKEQGHSPLLVACDLQRPNAVNQ 180

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+AK  D++I+DTAGRL  +  LM  
Sbjct: 181 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFAKAKVHDLVIVDTAGRLGIDQELMQQ 240

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ A+   E F    G  G++++K+DG ARGG 
Sbjct: 241 AAD-IR-----DAVSPDEILFVVDAMIGQEAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 294

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GE ++D + F     ++ I   LD G+
Sbjct: 295 ALSIASVTGKPIMFASNGEKLDDFDAFHPDRMASRI---LDMGD 335


>gi|314933415|ref|ZP_07840780.1| signal recognition particle protein [Staphylococcus caprae C87]
 gi|313653565|gb|EFS17322.1| signal recognition particle protein [Staphylococcus caprae C87]
          Length = 455

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  M      K ML AGD +R AAIDQL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQIDIPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +   A + A+ + +D +IIDTAGRLH +  LM  + ++  + K      
Sbjct: 161 YSEGDQVPPQQIVENALQHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ V+DA TGQ+A+   + F      +G+ +TK+DG  RGG  + I    + P+ F+
Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDDQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+ E ++ LE F  +  ++ I G  D
Sbjct: 275 GMSEKLDGLELFHPERMASRILGMGD 300


>gi|46579253|ref|YP_010061.1| signal recognition particle protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448667|gb|AAS95320.1| signal recognition particle protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233082|gb|ADP85936.1| signal recognition particle protein [Desulfovibrio vulgaris RCH1]
          Length = 508

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 147/307 (47%), Gaps = 22/307 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L +         +LD+  ++E L ++   L+ +D+   V +  ++ +  +   
Sbjct: 2   FDSLSDRLTQAFRKFSGQSQLDENNIQEGLREVRLALLEADVNFKVVKDFIDRVKERCLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVI 128
           +DV       Q+V+    +++H  L+ L      +   R   P VI++VG+ G GKTT  
Sbjct: 62  QDVLKSLTPAQQVV----KVVHDELVELLGGGTTELDLRGAQPGVIMMVGLQGSGKTTSS 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            K++  +    ++  L   D +R AAIDQL   A +    +  S        +   A   
Sbjct: 118 AKIANLLRKRKMRPYLVPVDVYRPAAIDQLVTLARQLDIPYYQSTPDMKPLDIVRAALAD 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+   +++DTAGRLH +  LM  +  +          AP  +L V DA TGQ+A+  
Sbjct: 178 AKEKQCTAVLLDTAGRLHVDEALMDELAALKATF------APQEILFVADAMTGQDAVTV 231

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+   G TG+++TKMDG ARGG  + I       V ++G+GE ++D+E F     + 
Sbjct: 232 ADAFNEKLGITGVVLTKMDGDARGGAALSIKSVTGASVKYVGIGEKLSDIEVFHPDRVAG 291

Query: 309 VITGCLD 315
            I G  D
Sbjct: 292 RILGMGD 298


>gi|161525962|ref|YP_001580974.1| signal recognition particle protein [Burkholderia multivorans ATCC
           17616]
 gi|189349319|ref|YP_001944947.1| signal recognition particle subunit SRP54 [Burkholderia multivorans
           ATCC 17616]
 gi|221202411|ref|ZP_03575443.1| signal recognition particle protein [Burkholderia multivorans
           CGD2M]
 gi|221208129|ref|ZP_03581134.1| signal recognition particle protein [Burkholderia multivorans CGD2]
 gi|221213245|ref|ZP_03586220.1| signal recognition particle protein [Burkholderia multivorans CGD1]
 gi|160343391|gb|ABX16477.1| signal recognition particle protein [Burkholderia multivorans ATCC
           17616]
 gi|189333341|dbj|BAG42411.1| signal recognition particle subunit SRP54 [Burkholderia multivorans
           ATCC 17616]
 gi|221166697|gb|EED99168.1| signal recognition particle protein [Burkholderia multivorans CGD1]
 gi|221172032|gb|EEE04474.1| signal recognition particle protein [Burkholderia multivorans CGD2]
 gi|221177688|gb|EEE10103.1| signal recognition particle protein [Burkholderia multivorans
           CGD2M]
          Length = 455

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTAGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVLI+DTAGRL  +  +M  I  +  VLK      
Sbjct: 164 FPSTPDQKPVDIAVAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGVLK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|90421127|ref|ZP_01229029.1| signal recognition particle protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334619|gb|EAS48399.1| signal recognition particle protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 517

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+K++++   K V++A+ DT R AA +QL++  ++T    
Sbjct: 100 PVVLMMVGLQGSGKTTTTGKLAKRLTERQRKKVLMASLDTRRPAAQEQLRVLGEQTGVAT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    D++I+DTAGR H +  LM  +  + R  +      
Sbjct: 160 LPIIAGQGPVEIAARAKQAAKLGGYDLVILDTAGRTHIDEPLMVEMADIKRTTE------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+     F    G TG+++T++DG  RGG  + +      P+  +
Sbjct: 214 PHEILLVADSLTGQDAVNLARSFDERVGITGIVLTRVDGDGRGGAALSMRAVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE ++ LE F     +  I G  D
Sbjct: 274 GTGEKMDALEDFHPSRIADRILGMGD 299


>gi|300722260|ref|YP_003711544.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628761|emb|CBJ89339.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Xenorhabdus
           nematophila ATCC 19061]
          Length = 453

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D +++ L ++   L+ +D+ + V +  +  +      
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   + K +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVQNELIKAMGEVNSELNLS-AQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K +L  + D +R AAI QL+  ++    DF  S+       +  +A + A+
Sbjct: 121 GKLLKEKNKKKVLVVSADVYRPAAIKQLETLSETVGIDFFPSDPQEKPIDIVNKAIQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL+IDTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLIDTAGRLHVDEAMMDEIKAVHAAVK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|186477391|ref|YP_001858861.1| signal recognition particle protein [Burkholderia phymatum STM815]
 gi|184193850|gb|ACC71815.1| signal recognition particle protein [Burkholderia phymatum STM815]
          Length = 455

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK   ++  ADF
Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+       +A  A   A+    DVL++DTAGRL  +  +M  I  + + L       
Sbjct: 164 FPSQPDQKPVDIARAAVDWAKRHYHDVLLVDTAGRLGIDEAMMNEIAALHKELN------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEIFYPDRMANRILGMGD 303


>gi|77409211|ref|ZP_00785921.1| signal recognition particle protein [Streptococcus agalactiae COH1]
 gi|77172187|gb|EAO75346.1| signal recognition particle protein [Streptococcus agalactiae COH1]
          Length = 521

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + M+ A D +R AAIDQLK    + +   
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEDNARPMMIAADIYRPAAIDQLKTLGSQINVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                   A  +  +  +QA+  + D ++IDTAGRL  ++ LM  +  +  + +      
Sbjct: 161 FDMGTNHSAVEIVTKGLEQARENRNDYVLIDTAGRLQIDATLMQELHDVKAIAQ------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ +L V+D+  GQ A    E F+     +G+++TK+DG  RGG  + +      P+ F 
Sbjct: 215 PNEILLVVDSMIGQEAANVAEEFNRQLSISGVVLTKIDGDTRGGAALSVREITGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I D+E F     ++ I G  D
Sbjct: 275 GTGEKITDIETFHPDRMASRILGMGD 300


>gi|327489572|gb|EGF21364.1| signal recognition particle protein [Streptococcus sanguinis
           SK1058]
          Length = 524

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEEKARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+A   D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|317508405|ref|ZP_07966075.1| signal recognition particle protein [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253252|gb|EFV12652.1| signal recognition particle protein [Segniliparus rugosus ATCC
           BAA-974]
          Length = 515

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 141/283 (49%), Gaps = 29/283 (10%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-------QRVLYDVSELIHKMLMPLSKPFNW 105
           L+ +D+ + V ++ +  +  K  AK V++       Q+V+  V E + ++L   S+   +
Sbjct: 38  LLEADVALPVVREFIGRV--KERAKGVALSGALNPAQQVVKIVDEELTEILGGESRRLQF 95

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             +  P VI++VG+ G GKTT+ GKL+K +   G   +L A D  R  A+ QL++  +R 
Sbjct: 96  AKTP-PTVIMLVGLQGAGKTTLAGKLAKWLKHQGHAPLLVACDLQRPGAVKQLQVVGERA 154

Query: 166 SADFVCSEIGS----------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
                  E G+          D  A+A    + A+ +  DV+++DTAGRL  +  LMA  
Sbjct: 155 GVGVFAPEPGASLDNDGITVGDPVAVARAGVEFARGQHHDVVVVDTAGRLGVDQELMAQ- 213

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
              IR     D  +P  VL  +DA  GQ+AL     F    G TG+++TK+DG ARGG  
Sbjct: 214 AAAIR-----DAVSPDEVLFTVDAMIGQDALHAATAFDQGVGFTGVVLTKLDGDARGGAA 268

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           + +      P+ F  VGE + D + F     S+ I   LD G+
Sbjct: 269 LSVRQVTGKPILFASVGEKLEDFDVFHPDRMSSRI---LDMGD 308


>gi|20151307|gb|AAM11013.1| AT23778p [Drosophila melanogaster]
          Length = 569

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 8/226 (3%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+ K++ P  KP+      + +V++ VG+ G GKTT   KL+        K  L   DT
Sbjct: 82  ELV-KLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ+K  A +    F  S    D   +A +     + +  +++I+DT+GR     
Sbjct: 140 FRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L     +M+ V   +   +P +++ V+DAT GQ    Q + F        +I+TK+DG 
Sbjct: 200 SLFE---EMLAVSNAV---SPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299


>gi|242277674|ref|YP_002989803.1| signal recognition particle protein [Desulfovibrio salexigens DSM
           2638]
 gi|242120568|gb|ACS78264.1| signal recognition particle protein [Desulfovibrio salexigens DSM
           2638]
          Length = 505

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 146/306 (47%), Gaps = 20/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F S S +L E   +     RLD+     G+RE +   L+ +D+   V +  VE++  +  
Sbjct: 2   FDSLSDRLSEAFKNFKGQGRLDEKNIQAGLRE-VRLALLEADVNYKVVKDFVEKVKERAL 60

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V++ + ++L    +        +   I++VG+ G GKTT   K
Sbjct: 61  GQEVQKSLSPGQQVIKVVNDELTELLGGEQEGLQLT-KGKLSKIMMVGLQGSGKTTSSAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++  +     K  L   D +R AAIDQL + A +       S    +   +  +A  +A+
Sbjct: 120 IALYLRRKKFKPYLVPADVYRPAAIDQLHVLAKQLDMPAYPSTTEMNPVDICRDAMVKAE 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNALRQV 249
               DVL+ DTAGRLH +  LM         L  +  H +P  +L V DA TGQ+A+   
Sbjct: 180 EAGCDVLLFDTAGRLHIDEPLM-------EELSSIKEHCSPDEILFVADAMTGQDAVNVA 232

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F      TG+++TKMDG ARGG  + I       V F+GVGE +++LE F     ++ 
Sbjct: 233 STFDDKLDVTGVVLTKMDGDARGGAALSIKSVTGKSVKFVGVGEKLSELELFYPDRAASR 292

Query: 310 ITGCLD 315
           I G  D
Sbjct: 293 ILGMGD 298


>gi|70726678|ref|YP_253592.1| hypothetical protein SH1677 [Staphylococcus haemolyticus JCSC1435]
 gi|68447402|dbj|BAE04986.1| ffh [Staphylococcus haemolyticus JCSC1435]
          Length = 456

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  M      K ML A D +R AAI+QL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQLDVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K      
Sbjct: 161 YSEGDQVKPQQIVENALKHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ ++ V+DA TGQ+A+   + F      TG+ +TK+DG  RGG  + I    + P+ F+
Sbjct: 215 PNEIMLVVDAMTGQDAVNVAQSFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+ E ++ LE F  +  ++ I G  D
Sbjct: 275 GMSEKMDGLELFHPERMASRILGMGD 300


>gi|313763657|gb|EFS35021.1| signal recognition particle protein [Propionibacterium acnes
           HL013PA1]
          Length = 528

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    ++   L+ +D+ ++V ++ V  +  + + +++S      Q+++  V+E + ++L 
Sbjct: 28  DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P ++++ G+ G GKTT+ GKL++   + G   +LAA D  R  A+ Q
Sbjct: 88  GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        E G+   D   +A +A  +A+ K  DV+IIDTAGRL  ++ +MA 
Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +           P   L V+DA  GQ+A+     F    G  G+++TK+DG ARGG 
Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GEG+ D + F     ++ I   LD G+
Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301


>gi|297566681|ref|YP_003685653.1| signal recognition particle protein [Meiothermus silvanus DSM 9946]
 gi|296851130|gb|ADH64145.1| signal recognition particle protein [Meiothermus silvanus DSM 9946]
          Length = 435

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 98/201 (48%), Gaps = 6/201 (2%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
            +VG+ G GKTT  GKL+      G + +L A DT R AA +QL+I  ++     +    
Sbjct: 103 FMVGLQGSGKTTTSGKLAAFYKAKGRRPLLVAADTQRPAAREQLRILGEKVGVPVLEVAD 162

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G      A    +       D++I+DTAGRL  +  LM  + K+  VL+      P    
Sbjct: 163 GERPEVTARRLREHLTFDYRDLVIVDTAGRLQIDEALMGELAKLKEVLR------PTETF 216

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA TGQ AL     F    G +GLI+TK+DG ARGG  +      + P+ F GV E 
Sbjct: 217 LVIDAMTGQEALGVSRTFDERVGISGLILTKLDGDARGGAALSARYVTQKPIVFAGVSEK 276

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           I  LEPF     ++ I G  D
Sbjct: 277 IEGLEPFYPDRLASRILGMGD 297


>gi|154686014|ref|YP_001421175.1| hypothetical protein RBAM_015810 [Bacillus amyloliquefaciens FZB42]
 gi|154351865|gb|ABS73944.1| Ffh [Bacillus amyloliquefaciens FZB42]
          Length = 446

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+ +  D +I+DTAGRLH +  LM  +  +  V      
Sbjct: 159 PVFSLGDQVSPVEIARQAIEKAKEEHHDYVILDTAGRLHIDHELMDELSGVKEVAN---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+D+ TGQ+A+   + F+   G TG+I+TK+DG  RGG  + I    + P+ 
Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNDQLGLTGVILTKLDGDTRGGAALSIRAVTETPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LE F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300


>gi|115497558|ref|NP_001068590.1| signal recognition particle receptor subunit alpha [Bos taurus]
 gi|122139924|sp|Q3MHE8|SRPR_BOVIN RecName: Full=Signal recognition particle receptor subunit alpha;
           Short=SR-alpha; AltName: Full=Docking protein alpha;
           Short=DP-alpha
 gi|75773717|gb|AAI05265.1| Signal recognition particle receptor (docking protein) [Bos taurus]
          Length = 639

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 153/323 (47%), Gaps = 42/323 (13%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           TKG       + +G+    S  R D + V +++ D LI  ++   +A ++ E +  K   
Sbjct: 314 TKGTLGGMFGMLKGLVGSKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 373

Query: 77  KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125
           K + +   V   V + + + L+ + +P           +     RP+V+   GVNGVGK+
Sbjct: 374 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKS 433

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172
           T + K+S  + + G  V++AA DTFR+ A++QL+    R SA                  
Sbjct: 434 TNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEK 493

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  
Sbjct: 494 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 547

Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVT 281
           VL V +A  G  A+ Q+  F      H++A T     G+++TK D    + G  I +   
Sbjct: 548 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYI 607

Query: 282 HKIPVYFLGVGEGINDLEPFVAK 304
              P+ F+G G+   DL    AK
Sbjct: 608 TSKPIVFVGTGQTYCDLRSLNAK 630


>gi|94985540|ref|YP_604904.1| signal recognition particle protein [Deinococcus geothermalis DSM
           11300]
 gi|94555821|gb|ABF45735.1| signal recognition particle GTPase [Deinococcus geothermalis DSM
           11300]
          Length = 450

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 131/276 (47%), Gaps = 19/276 (6%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIHKMLMPL 99
           E+   L+ +D+   VA+  V ++  K   ++V        +V ++++D  ELI  +    
Sbjct: 33  EIRMALLEADVNFNVAKDFVAKVSEKAVGQEVVGSLTAGQTVVKLVHD--ELIETLGGEA 90

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            +P      +  +V  +VG+ G GKTT  GKL+      G +V+L A DT R AA DQL+
Sbjct: 91  RQPT---LKNDGNVWFMVGLQGAGKTTSAGKLAAFYKSKGRRVLLVAADTQRPAARDQLE 147

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           + A +     +  + G           +  +    D++I+DTAGRL  +  LM  +  + 
Sbjct: 148 VLAKQVGVPVLKVKDGETPQETKRRLDEYLKTDYRDLVIVDTAGRLQIDEALMDQLAALQ 207

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
             L+      P   L V+DA TGQ AL    +F      +GLI+TKMDG ARGG  +   
Sbjct: 208 AELQ------PTETLLVVDAMTGQEALNVARVFDERVHLSGLIITKMDGDARGGAALSAR 261

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                P+YF GV E +  LEPF     +  I G  D
Sbjct: 262 SVTGKPIYFAGVSEKLTGLEPFYPDRVAGRILGMGD 297


>gi|332208934|ref|XP_003253565.1| PREDICTED: signal recognition particle receptor subunit alpha-like,
           partial [Nomascus leucogenys]
          Length = 608

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 304 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 363

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 364 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 423

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R SA                    G DAA +A EA   A+ + 
Sbjct: 424 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 483

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 484 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 537

Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 538 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 597

Query: 303 AK 304
           AK
Sbjct: 598 AK 599


>gi|238026162|ref|YP_002910393.1| Signal recognition particle protein [Burkholderia glumae BGR1]
 gi|237875356|gb|ACR27689.1| Signal recognition particle protein [Burkholderia glumae BGR1]
          Length = 455

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 13/209 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKQKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVLI+DTAGRL  +  +M  I ++         HA
Sbjct: 164 FPSTPEQKPVEIARAALDWARRHYHDVLIVDTAGRLGIDEAMMKEIAEL---------HA 214

Query: 230 ---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+
Sbjct: 215 AINPAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRSITGKPI 274

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+GV E ++ LE F     +  I G  D
Sbjct: 275 KFVGVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|332701670|ref|ZP_08421758.1| signal recognition particle protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551819|gb|EGJ48863.1| signal recognition particle protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 508

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 146/286 (51%), Gaps = 14/286 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSE 90
           ++   + +G+RE +   L+ +D+   V ++ V+ +  K   +DV       Q+V+  V +
Sbjct: 22  LTEENIQEGLRE-VRLALLEADVNFKVVKQFVDRVREKALGQDVQGSLTPGQQVVKVVHD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDT 149
            + ++L   +  F+   S +P  +++VG+ G GKTT  GKL+  +  +  +K  L   D 
Sbjct: 81  ELVELLGGKTSAFDVKGS-KPLTVMMVGLQGSGKTTSAGKLALYLRREHKMKPFLVPADV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAIDQL     +       S    +   +  +A + A+ K  D+++ DTAGRLH + 
Sbjct: 140 YRPAAIDQLTKLGAQIDVPVYPSSTDMNPVDICRDALQVAKDKGYDLVLFDTAGRLHIDE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  +  +   +      +P  +L V DA TGQ+A+   + F A    +G+++TKMDG 
Sbjct: 200 RLMEELANIKAAV------SPREILFVADAMTGQDAVNVAQSFDAKLEISGVVLTKMDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ARGG  + I       V F+G+GE ++++E F     ++ I G  D
Sbjct: 254 ARGGAALSIKSVTGKSVKFVGMGEKLSEMEVFHPDRIASRILGMGD 299


>gi|256820615|ref|YP_003141894.1| signal recognition particle protein [Capnocytophaga ochracea DSM
           7271]
 gi|315223725|ref|ZP_07865575.1| signal recognition particle protein [Capnocytophaga ochracea F0287]
 gi|256582198|gb|ACU93333.1| signal recognition particle protein [Capnocytophaga ochracea DSM
           7271]
 gi|314946300|gb|EFS98299.1| signal recognition particle protein [Capnocytophaga ochracea F0287]
          Length = 442

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADR 164
           + S  P VIL+ G+ G GKTT  GKL+  + +    K +L A D +R AAIDQL I  ++
Sbjct: 94  NLSGNPTVILMSGLQGSGKTTFSGKLANYLKNKRNKKPLLVACDVYRPAAIDQLHIVGEQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                   +  ++   +A +  + A+   ++V+I+DTAGRL  +  +M  I  + + L  
Sbjct: 154 VGVPVFSDKGNNNPVDIAKKGVQYAKENHLNVVIVDTAGRLAVDEQMMTEISNIHKALN- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+DA TGQ+A+   + F+ V    G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDAMTGQDAVNTAKAFNDVLNFDGVILTKLDGDTRGGAAITIKSVVNK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE ++ ++ F     +  I G  D
Sbjct: 268 PIKFVGTGEKMDAIDVFYPDRMADRILGMGD 298


>gi|254253308|ref|ZP_04946626.1| Signal recognition particle protein [Burkholderia dolosa AUO158]
 gi|124895917|gb|EAY69797.1| Signal recognition particle protein [Burkholderia dolosa AUO158]
          Length = 455

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSTPDQKPVDIAVAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGTLK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|302767828|ref|XP_002967334.1| hypothetical protein SELMODRAFT_439853 [Selaginella moellendorffii]
 gi|300165325|gb|EFJ31933.1| hypothetical protein SELMODRAFT_439853 [Selaginella moellendorffii]
          Length = 609

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 130/272 (47%), Gaps = 28/272 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPF---- 103
           L+D L+  ++   +A+KI E +      K + +  RV   V E +   L+ +  P     
Sbjct: 330 LKDRLMTKNVAEEIAEKICESVAASLLGKKLGTFTRVSSAVKEAMGDALLRILTPKRSID 389

Query: 104 ------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                 +     RP+VI+ VGVNGVGK+T + K++  +    L V++AA DTFRS A++Q
Sbjct: 390 ILRDVKSAKDEGRPYVIVFVGVNGVGKSTSLAKVAYWLKSHELSVLIAACDTFRSGAVEQ 449

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A R            D A +A EA   A   K DV+++DTAGR+ +N  LM  +  
Sbjct: 450 LRTHAKRLQTTLYEKGYEKDPANVAREAIATAAKTKHDVVLVDTAGRMQDNEPLMRALAN 509

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----------TGLIMTKMD 267
           +I V K      P  VL V +A  G  A+ Q+  F+                G+++TK D
Sbjct: 510 LINVNK------PDLVLFVGEALVGNEAVDQLSKFNQTLADLSATAKRKPIDGILLTKFD 563

Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
               + G  + +V     P+ FLG G+  +DL
Sbjct: 564 TIDDKVGAALSMVYVSGAPIMFLGCGQSYHDL 595


>gi|296394376|ref|YP_003659260.1| signal recognition particle protein [Segniliparus rotundus DSM
           44985]
 gi|296181523|gb|ADG98429.1| signal recognition particle protein [Segniliparus rotundus DSM
           44985]
          Length = 516

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 140/283 (49%), Gaps = 29/283 (10%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-------QRVLYDVSELIHKMLMPLSKPFNW 105
           L+ +D+ + V ++ V  +  K  AK V++       Q+V+  V E + ++L   S+   W
Sbjct: 38  LLEADVALPVVREFVARV--KERAKGVALSGALNPAQQVVKIVDEELTEILGGESRRL-W 94

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
                P VI++VG+ G GKTT+ GKL+K +   G   +L A D  R  A+ QL++ A+R 
Sbjct: 95  LAKTPPTVIMLVGLQGAGKTTLAGKLAKWLKSQGHAPLLVACDLQRPGAVKQLQVVAERA 154

Query: 166 SADFVCSEIGS----------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
                  + G+          D  A+A    + A+ +  DV+++DTAGRL  +  LMA  
Sbjct: 155 GVAVHAPQPGASLEHDGVTAGDPVAVARSGVQLAREQHHDVVVVDTAGRLGVDQELMAQA 214

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
              IR     D  +P  VL  +DA  GQ+AL     F    G TG+++TK+DG ARGG  
Sbjct: 215 AA-IR-----DAVSPDEVLFTVDAMIGQDALHAATAFDQGVGFTGVVLTKLDGDARGGAA 268

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           + +      P+ F   GE + D + F     S+ I   LD G+
Sbjct: 269 LSVRQVTGKPILFASSGEKLEDFDVFHPDRMSSRI---LDMGD 308


>gi|91205962|ref|YP_538317.1| Signal recognition particle protein [Rickettsia bellii RML369-C]
 gi|122990889|sp|Q1RHD6|SRP54_RICBR RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|91069506|gb|ABE05228.1| Signal recognition particle protein [Rickettsia bellii RML369-C]
          Length = 449

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 152/290 (52%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89
           +++  ++D  +R+ +   L+ SD+ + V +  V E+  K   ++V  SV   Q ++  + 
Sbjct: 21  LLTEEQIDAALRD-IRVALLESDVALPVIKNFVAEVKQKALGQEVIKSVSPGQMIIKIIH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P V +L+VG+ G GKTT  GKL+  + +   KV+L + D
Sbjct: 80  EEMINILSSSEDEIKLNLNAKPPVNLLMVGLQGSGKTTASGKLALCLKNQNKKVLLVSLD 139

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL+I A+    + +    G     +   A  +A+    D++I DTAGR   +
Sbjct: 140 TYRPAAQEQLEILANSVKINSLPIVKGEKPLDIVKRAMAEAKLSAYDIVIYDTAGRTQID 199

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M    + I + K ++   P   L V+D+ TGQ+A+     F+     +GLI++++DG
Sbjct: 200 QEMM---NEAIAIKKIVE---PTETLLVIDSMTGQDAVVTASSFNEQLEISGLILSRIDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            ++GG  + +    + P+ FL  GE + DLE F AK  ++ I   LD G+
Sbjct: 254 DSKGGAALSVKYITQRPIKFLSSGEKLTDLEEFDAKRIASRI---LDMGD 300


>gi|329936725|ref|ZP_08286432.1| signal recognition particle protein [Streptomyces griseoaurantiacus
           M045]
 gi|329303955|gb|EGG47838.1| signal recognition particle protein [Streptomyces griseoaurantiacus
           M045]
          Length = 521

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++ +  +    +VS      Q+VL  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRTFIKNVKERALGSEVSRALNPAQQVLKIVNEELVTILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL + + + G   +L A D  R  A++Q
Sbjct: 88  GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKEQGHSPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+ K  D++I+DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFAKTKVHDIVIVDTAGRLGIDQELMRQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I      P+ F   GE +++ + F
Sbjct: 261 ALSIASVTGKPIMFASNGEKLDEFDAF 287


>gi|195337623|ref|XP_002035428.1| GM14699 [Drosophila sechellia]
 gi|194128521|gb|EDW50564.1| GM14699 [Drosophila sechellia]
          Length = 508

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 8/226 (3%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+ K++ P  KP+      + +V++ VG+ G GKTT   KL+        K  L   DT
Sbjct: 82  ELV-KLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ+K  A +    F  S    D   +A +     + +  +++I+DT+GR     
Sbjct: 140 FRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L     +M+ V   +   +P +++ V+DAT GQ    Q + F        +I+TK+DG 
Sbjct: 200 SLFE---EMLAVSNAV---SPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299


>gi|299116639|emb|CBN76263.1| PFfh, plastid Ffh subunit of the signal recognition particle
           [Ectocarpus siliculosus]
          Length = 557

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 140/284 (49%), Gaps = 17/284 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDV--SELIHKML 96
           +G   E++  L+ +D+ + V   +V+ + +K    +    V+ ++   +V   EL+  M 
Sbjct: 122 EGALNEVKRALLDADLNLMVTNTLVDAVKSKAVGMKLVDGVTAKQQFVNVMNDELVEIMG 181

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAA 154
              + P       +P VIL+ G+ G GKTT   KL+K  +  +   KV+L AGD +R AA
Sbjct: 182 AEQA-PLARRTDGKPTVILLAGLQGTGKTTAAAKLAKYLQQEEEPKKVLLVAGDVYRPAA 240

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           IDQL     R   +      G D   +     ++A   + D +I+DTAGR   +  LM  
Sbjct: 241 IDQLISLGKRIDVEVFSMGQGVDPVEITKAGLERAVEGEFDTVIVDTAGRQVVDDTLMTE 300

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K I+V    D      VL V+DA TGQ A     +F+   G TG ++TKMDG  RGG 
Sbjct: 301 L-KDIQVASEAD-----EVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGA 354

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + +    + P+ F+G+GE +++ E   AK    +I    D+ +
Sbjct: 355 ALSVQGVSQKPIKFVGIGEKMSEEE--AAKLAKKMINAEFDFND 396


>gi|73954897|ref|XP_546411.2| PREDICTED: similar to Signal recognition particle receptor alpha
           subunit (SR-alpha) (Docking protein alpha) (DP-alpha)
           [Canis familiaris]
          Length = 612

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 308 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 367

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 368 VQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 427

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R SA                    G DAA +A EA   A+ + 
Sbjct: 428 CDTFRAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 487

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 488 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 541

Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 542 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 601

Query: 303 AK 304
           AK
Sbjct: 602 AK 603


>gi|289427776|ref|ZP_06429487.1| signal recognition particle protein [Propionibacterium acnes J165]
 gi|289159040|gb|EFD07233.1| signal recognition particle protein [Propionibacterium acnes J165]
          Length = 528

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    ++   L+ +D+ ++V ++ V  +  + + +++S      Q+++  V+E + ++L 
Sbjct: 28  DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P ++++ G+ G GKTT+ GKL++   + G   +LAA D  R  A+ Q
Sbjct: 88  GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        E G+   D   +A +A  +A+ K  DV+IIDTAGRL  ++ +MA 
Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAGMMAQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +           P   L V+DA  GQ+A+     F    G  G+++TK+DG ARGG 
Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GEG+ D + F     ++ I   LD G+
Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301


>gi|239982565|ref|ZP_04705089.1| signal recognition particle protein [Streptomyces albus J1074]
          Length = 516

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 133/267 (49%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++++  +   ++VS      Q+++  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIKQVKERALGEEVSKALNPAQQIIKIVNEELVGILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL K +   G   +L A D  R  A++Q
Sbjct: 88  GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGKWLQGQGHTPLLVAADLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++   A+ K+ DV+++DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVGIFAPEPGNGVGDPVQVAKDSIAHARTKQYDVVVVDTAGRLGIDQELMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D   P  VL V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVQPDEVLFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I       + F   GE + D + F
Sbjct: 261 ALSIAHVTGKQIMFASNGEKLEDFDAF 287


>gi|21282849|ref|NP_645937.1| hypothetical protein MW1120 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486076|ref|YP_043297.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57651806|ref|YP_186112.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161356|ref|YP_493827.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194944|ref|YP_499744.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221359|ref|YP_001332181.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|221142027|ref|ZP_03566520.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253733525|ref|ZP_04867690.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|258452535|ref|ZP_05700541.1| signal recognition particle protein [Staphylococcus aureus A5948]
 gi|262048135|ref|ZP_06021022.1| hypothetical protein SAD30_1911 [Staphylococcus aureus D30]
 gi|262051866|ref|ZP_06024082.1| hypothetical protein SA930_1416 [Staphylococcus aureus 930918-3]
 gi|284024161|ref|ZP_06378559.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848231|ref|ZP_06788978.1| signal recognition particle protein [Staphylococcus aureus A9754]
 gi|297208119|ref|ZP_06924550.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300912199|ref|ZP_07129642.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381199|ref|ZP_07363852.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|21204288|dbj|BAB94985.1| ffh [Staphylococcus aureus subsp. aureus MW2]
 gi|49244519|emb|CAG42948.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285992|gb|AAW38086.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127330|gb|ABD21844.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202502|gb|ABD30312.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374159|dbj|BAF67419.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|253728579|gb|EES97308.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257859753|gb|EEV82595.1| signal recognition particle protein [Staphylococcus aureus A5948]
 gi|259160267|gb|EEW45295.1| hypothetical protein SA930_1416 [Staphylococcus aureus 930918-3]
 gi|259163701|gb|EEW48256.1| hypothetical protein SAD30_1911 [Staphylococcus aureus D30]
 gi|269940729|emb|CBI49110.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|294825031|gb|EFG41453.1| signal recognition particle protein [Staphylococcus aureus A9754]
 gi|296887362|gb|EFH26264.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300886445|gb|EFK81647.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302751060|gb|ADL65237.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340182|gb|EFM06123.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315198476|gb|EFU28805.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140947|gb|EFW32794.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144338|gb|EFW36104.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329313906|gb|AEB88319.1| Signal recognition particle protein [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329724762|gb|EGG61267.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733573|gb|EGG69901.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 455

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 135/269 (50%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V ++ ++ +  +    DV       Q+V+  V + + +++   +   N   
Sbjct: 39  LLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+++VG+ G GKTT  GKL+  M      K ML A D +R AAI+QL+    +  
Sbjct: 98  NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K   
Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+ ++ V+D+ TGQ+A+   E F      TG+ +TK+DG  RGG  + I    + P+
Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+ E ++ LE F  +  ++ I G  D
Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300


>gi|296160511|ref|ZP_06843327.1| signal recognition particle protein [Burkholderia sp. Ch1-1]
 gi|295889260|gb|EFG69062.1| signal recognition particle protein [Burkholderia sp. Ch1-1]
          Length = 455

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK   ++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             SE       +A  A   A+    DVL++DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSEPDQKPVDIARAAVDWAKRHYHDVLLVDTAGRLGIDEAMMKEITALHTELK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|17647949|ref|NP_523931.1| signal recognition particle protein 54k [Drosophila melanogaster]
 gi|5679038|gb|AAD46831.1|AF160891_1 BcDNA.GM09489 [Drosophila melanogaster]
 gi|7295492|gb|AAF50806.1| signal recognition particle protein 54k [Drosophila melanogaster]
 gi|220952956|gb|ACL89021.1| Srp54k-PA [synthetic construct]
          Length = 508

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 8/226 (3%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+ K++ P  KP+      + +V++ VG+ G GKTT   KL+        K  L   DT
Sbjct: 82  ELV-KLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ+K  A +    F  S    D   +A +     + +  +++I+DT+GR     
Sbjct: 140 FRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L     +M+ V   +   +P +++ V+DAT GQ    Q + F        +I+TK+DG 
Sbjct: 200 SLFE---EMLAVSNAV---SPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299


>gi|157826674|ref|YP_001495738.1| Signal recognition particle protein [Rickettsia bellii OSU 85-389]
 gi|157801978|gb|ABV78701.1| Signal recognition particle protein [Rickettsia bellii OSU 85-389]
          Length = 449

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 152/290 (52%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89
           +++  ++D  +R+ +   L+ SD+ + V +  V E+  K   ++V  SV   Q ++  + 
Sbjct: 21  LLTEEQIDAALRD-IRVALLESDVALPVIKNFVAEVKQKALGQEVIKSVSPGQMIIKIIH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P V +L+VG+ G GKTT  GKL+  + +   KV+L + D
Sbjct: 80  EEMINILSSSEDEIKLNLNAKPPVNLLMVGLQGSGKTTASGKLALCLKNQNKKVLLVSLD 139

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL+I A+    + +    G     +   A  +A+    D++I DTAGR   +
Sbjct: 140 TYRPAAQEQLEILANSVKINSLPIVKGDKPLDIVKRAMAEAKLSAYDIVIYDTAGRTQID 199

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M    + I + K ++   P   L V+D+ TGQ+A+     F+     +GLI++++DG
Sbjct: 200 QEMM---NEAIAIKKIVE---PTETLLVIDSMTGQDAVVTASSFNEQLEISGLILSRIDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            ++GG  + +    + P+ FL  GE + DLE F AK  ++ I   LD G+
Sbjct: 254 DSKGGAALSVKYITQRPIKFLSSGEKLTDLEEFDAKRIASRI---LDMGD 300


>gi|115350547|ref|YP_772386.1| signal recognition particle protein [Burkholderia ambifaria AMMD]
 gi|170699971|ref|ZP_02890998.1| signal recognition particle protein [Burkholderia ambifaria
           IOP40-10]
 gi|172059579|ref|YP_001807231.1| signal recognition particle protein [Burkholderia ambifaria MC40-6]
 gi|115280535|gb|ABI86052.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           ambifaria AMMD]
 gi|170135119|gb|EDT03420.1| signal recognition particle protein [Burkholderia ambifaria
           IOP40-10]
 gi|171992096|gb|ACB63015.1| signal recognition particle protein [Burkholderia ambifaria MC40-6]
          Length = 455

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKHKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSTPDQKPVDIAVAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGTLK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|326315620|ref|YP_004233292.1| signal recognition particle protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372456|gb|ADX44725.1| signal recognition particle protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 459

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QLK    +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S        +A  A   A+    DVL++DTAGRL  +  LM  I ++   L    
Sbjct: 157 AEWFPSTPDQKPLDIARAAIDHARRHYFDVLLVDTAGRLAIDEALMNEIKELHAALN--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+
Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GV E I+ LE F A+  +  + G  D
Sbjct: 271 KFAGVSEKIDGLEVFDAERHAGRVLGMGD 299


>gi|111225152|ref|YP_715946.1| Signal recognition particle GTPase [Frankia alni ACN14a]
 gi|111152684|emb|CAJ64425.1| Signal recognition particle GTPase [Frankia alni ACN14a]
          Length = 517

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +  T +    RL D        E+   L+ +D+ + V +  V  + ++   
Sbjct: 2   FDTLSSRLDKVFTSLRGRGRLTDADIDATAREIRVALLEADVALPVVRSFVAAIKSRARG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V+E +  +L   +    +  +  P VIL+ G+ G GKTT+ GKL
Sbjct: 62  AEVGASLNPAQQVIKIVNEELVAILGGGTTTLRFAKTP-PTVILLAGLQGTGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G   +L A D  R  A++QL++   R   +    E G+   D   +A +A   
Sbjct: 121 GRWLKAQGHTPLLVAADLQRPNAVNQLQVVGARAGVEVFAPEPGNGVGDPVRVARDALAH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ +  DV+++DTAGRL  +  LM      IR     D  +P  +L VLDA  GQ+A+  
Sbjct: 181 ARRQVFDVVVVDTAGRLGVDEELMRQAAD-IR-----DAVSPDEILFVLDAMIGQDAVAT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G +G+++TK+DG ARGG  + +      P+ F   GE ++D + F  +  ++
Sbjct: 235 ANAFADGVGFSGVVLTKLDGDARGGAALSVAQVTGRPIMFASTGEALDDFDVFHPERMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|282920020|ref|ZP_06327749.1| signal recognition particle protein [Staphylococcus aureus A9765]
 gi|282594736|gb|EFB99720.1| signal recognition particle protein [Staphylococcus aureus A9765]
          Length = 455

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 135/269 (50%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V ++ ++ +  +    DV       Q+V+  V + + +++   +   N   
Sbjct: 39  LLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+++VG+ G GKTT  GKL+  M      K ML A D +R AAI+QL+    +  
Sbjct: 98  NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K   
Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+ ++ V+D+ TGQ+A+   E F      TG+ +TK+DG  RGG  + I    + P+
Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+ E ++ LE F  +  ++ I G  D
Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300


>gi|295666878|ref|XP_002793989.1| signal recognition particle 54 kDa protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226277642|gb|EEH33208.1| signal recognition particle 54 kDa protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 530

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 145/301 (48%), Gaps = 22/301 (7%)

Query: 27  KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL--------LTKR 74
           ++   + D+  S  +D    D + +E+   L+ +D+ V + Q + + +        L   
Sbjct: 9   RINAAVNDLTRSSNIDEQAFDAMIKEICAALLSADVNVRLVQSLRKSIKSSVQFSSLPPA 68

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K   +Q+ ++D  +L+  ++ P  +PF      R +V++ VG+ G GKTT   KL++ 
Sbjct: 69  VNKKRLIQKTVFD--QLV-ALVDPHCEPFKPK-KGRSNVVMFVGLQGAGKTTTCTKLARH 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +  L   DTFR+ A DQLK  A +    +  S   +D   +A E   + + ++ 
Sbjct: 125 YQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVAAEGVAKFKKERF 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I+DT+GR    + L A + ++   +K      P   + VLD T GQ A  Q   F A
Sbjct: 185 DIIIVDTSGRHKQEADLFAEMTQIQTAIK------PDQTILVLDGTIGQAAEIQSSAFKA 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  
Sbjct: 239 TADFGAIIITKTDGAAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMG 298

Query: 315 D 315
           D
Sbjct: 299 D 299


>gi|312879511|ref|ZP_07739311.1| signal recognition particle subunit FFH/SRP54 (srp54) [Aminomonas
           paucivorans DSM 12260]
 gi|310782802|gb|EFQ23200.1| signal recognition particle subunit FFH/SRP54 (srp54) [Aminomonas
           paucivorans DSM 12260]
          Length = 448

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 142/274 (51%), Gaps = 14/274 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+   V + + + +  +   +DV       Q+VL  V E +  ++    KP
Sbjct: 33  EVRRALLEADVHYKVVKDLTDRIRERATGQDVLASITPAQQVLTIVFEELVAVMGSEPKP 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                   P V L+ G+ G GKTT   K++ ++  +  K ++ A D  R AA++QL++ A
Sbjct: 93  LTIS-PKPPTVYLMAGLQGSGKTTSTVKIASRLKGSH-KPLVVACDLQRPAAVEQLRVLA 150

Query: 163 DRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           ++    F   + G +D   +A  + K A+    D++++DTAGRL  +  LM    +++R+
Sbjct: 151 EKAGVAFYGPQAGQTDPVQVARGSLKYAEDHLADLILLDTAGRLQIDEALME---ELVRI 207

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            + +    P  VL V+DA TGQ A+   E FHA  G TG+++TK+DG ARGG  + I   
Sbjct: 208 KEAV---PPQEVLLVVDAMTGQEAVTVAESFHAKLGLTGVVLTKLDGDARGGAALAIGAA 264

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              PV   G+GE I DLE F A+     I G  D
Sbjct: 265 TGAPVKLAGMGEKIEDLEVFDARRMGQRILGMGD 298


>gi|217979109|ref|YP_002363256.1| signal recognition particle protein [Methylocella silvestris BL2]
 gi|217504485|gb|ACK51894.1| signal recognition particle protein [Methylocella silvestris BL2]
          Length = 540

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 142/274 (51%), Gaps = 13/274 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V +  V+++  +    +V  SV   Q V+  V++++ + L   + P
Sbjct: 33  EVRRALLEADVALDVVRSFVDKVRARAIGANVVKSVTPGQMVVKIVNDVLIETLGSDADP 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIW 161
            N D +  P  I++VG+ G GKTT   K++K++ +  G KV++A+ D  R AA +QL + 
Sbjct: 93  INLDAAA-PVAIMMVGLQGAGKTTTAAKIAKRLKEQMGRKVLMASLDVKRPAAQEQLAVL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +   D +    G     +A  A +  + +  DV++ DTAGR H +  LM  + + I+ 
Sbjct: 152 GRQVGVDTLPIVAGQTPVQIAVRAEQAGRLQGYDVVLFDTAGRTHIDEALMQEMVE-IKA 210

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
             R     PH +L V D+ TGQ+A+   + F    G TG+++T++DG  RGG  + +   
Sbjct: 211 ASR-----PHEILLVADSLTGQDAVHLAKNFDDRVGITGIVLTRVDGDGRGGAALSMRAV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+  LG GE ++ LE F     +  I G  D
Sbjct: 266 TGKPIKLLGSGEKMDALEDFHPSRIANRILGMGD 299


>gi|156541190|ref|XP_001599499.1| PREDICTED: similar to signal recognition particle receptor alpha
           subunit [Nasonia vitripennis]
          Length = 617

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 143/295 (48%), Gaps = 41/295 (13%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP- 98
           V E+L+D LI  ++   +AQK+ + +  K   K     D     V   +++ + ++L P 
Sbjct: 321 VLEKLKDHLISKNVAAEIAQKLCDSICVKLEGKVLGTFDSVANTVKASLTDALVQILSPK 380

Query: 99  -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                L   F    + RP+V+   GVNGVGK+T + K+   + +   +V++AA DTFR+ 
Sbjct: 381 RRVDILRDAFEAKKNGRPYVMAFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAG 440

Query: 154 AIDQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           A++QL+                + T         G DAA +A EA + A   + DV+++D
Sbjct: 441 AVEQLRTHMKHLNALHPPEKHGNMTMVQLYEKGYGKDAAGIAMEAIRFATDSRFDVVLVD 500

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259
           TAGR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ A+A  +
Sbjct: 501 TAGRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYS 554

Query: 260 ---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                    G+++TK D    + G  I +      P+ F+G G+   DL+   AK
Sbjct: 555 NSTNPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAK 609


>gi|89902111|ref|YP_524582.1| signal recognition particle protein [Rhodoferax ferrireducens T118]
 gi|89346848|gb|ABD71051.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodoferax
           ferrireducens T118]
          Length = 454

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 108/209 (51%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QLK+   +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKMVTAQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S       A+A  A   A+    DVL++DTAGRL  +  LM  I  +   L    
Sbjct: 157 AEWFPSSPDQKPVAIALAALDYARKHFFDVLLVDTAGRLAIDEALMQEIKALHAALN--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+I+TK+DG +RGG  + +      P+
Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKDALPLTGIILTKLDGDSRGGAALSVRQVTGAPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G  E ++ LE F A+  +  I G  D
Sbjct: 271 KFAGTSEKLDGLEVFDAERHAGRILGMGD 299


>gi|195587932|ref|XP_002083715.1| GD13881 [Drosophila simulans]
 gi|194195724|gb|EDX09300.1| GD13881 [Drosophila simulans]
          Length = 508

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 8/226 (3%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+ K++ P  KP+      + +V++ VG+ G GKTT   KL+        K  L   DT
Sbjct: 82  ELV-KLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ+K  A +    F  S    D   +A +     + +  +++I+DT+GR     
Sbjct: 140 FRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L     +M+ V   +   +P +++ V+DAT GQ    Q + F        +I+TK+DG 
Sbjct: 200 SLFE---EMLAVSNAV---SPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 299


>gi|328947325|ref|YP_004364662.1| signal recognition particle protein [Treponema succinifaciens DSM
           2489]
 gi|328447649|gb|AEB13365.1| signal recognition particle protein [Treponema succinifaciens DSM
           2489]
          Length = 464

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 148/287 (51%), Gaps = 17/287 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL---YDVSELI 92
           I+ + +++ V E+++  L+ +D+ + V ++ V    T   AK   V R +       ++I
Sbjct: 22  ITEKNIEETV-EQIKMALLEADVNLRVVRRFVNS--TIEEAKGEKVLRAVDPGQQFVKII 78

Query: 93  HKMLMPLSKPFNWDFSHR----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +  L+ +      D + +      VIL++G+ G GKTT   KL+ ++   G + +L A D
Sbjct: 79  YDKLVAMLGDKKTDLALKGPDTQSVILLLGLQGAGKTTAAHKLAARLKKDGRRPLLVACD 138

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             R AA++QL +  ++     V  E   DA  +A  +   A+   +D +I+DTAGRL  +
Sbjct: 139 LIRPAAVEQLCVLGEKIGVP-VYKEDSKDAVKVAEHSVDFAKKNGLDTIIVDTAGRLQID 197

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +MA   +++ + K+L+P    +VL V D+ TGQNA+   + F    G TG+I+TK D 
Sbjct: 198 EEMMA---ELVSIKKKLNP--VETVL-VADSMTGQNAVDIAKSFDEQLGLTGVILTKFDS 251

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            ARGG  + +    + P+ F+G GE   D E F     ++ I G  D
Sbjct: 252 DARGGAALSLKSITQKPILFIGTGEKTEDFESFHPDRIASRILGMGD 298


>gi|171316239|ref|ZP_02905462.1| signal recognition particle protein [Burkholderia ambifaria MEX-5]
 gi|171098653|gb|EDT43450.1| signal recognition particle protein [Burkholderia ambifaria MEX-5]
          Length = 455

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKHKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSTPDQKPVDIAVAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGTLK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|148693439|gb|EDL25386.1| mCG7475 [Mus musculus]
          Length = 624

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 320 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 379

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 380 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 439

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R +A                    G DAA +A EA   A+ + 
Sbjct: 440 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 499

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 500 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 553

Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 554 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 613

Query: 303 AK 304
           AK
Sbjct: 614 AK 615


>gi|77627979|ref|NP_001029322.1| signal recognition particle receptor subunit alpha [Rattus
           norvegicus]
 gi|76779803|gb|AAI05783.1| Signal recognition particle receptor ('docking protein') [Rattus
           norvegicus]
          Length = 636

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 332 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 391

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 392 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 451

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R +A                    G DAA +A EA   A+ + 
Sbjct: 452 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 511

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 512 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 565

Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 566 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 625

Query: 303 AK 304
           AK
Sbjct: 626 AK 627


>gi|162456823|ref|YP_001619190.1| signal recognition particle protein [Sorangium cellulosum 'So ce
           56']
 gi|161167405|emb|CAN98710.1| signal recognition particle protein [Sorangium cellulosum 'So ce
           56']
          Length = 546

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P  I++VG+ G GKTT   KLS+ +   G K +L A D  R AA++QLK+  +      V
Sbjct: 109 PTGIMMVGLQGSGKTTSCAKLSRYLEKQGKKPLLVAADMQRPAAVEQLKVLGESLKIP-V 167

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +  G    A+   A  +A+    DV+I DTAGRL  +  LM  + ++       D   P
Sbjct: 168 FNIPGESPVAICAAARGEAKRLGRDVIIYDTAGRLAIDEPLMQELAQI------KDATKP 221

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            +V  V+DA  GQ+A++    F+      G+++TK+DG ARGG  + I      PV F G
Sbjct: 222 ENVFLVVDAMIGQDAVKTARGFNERLSIGGVVLTKLDGDARGGAALSIKEVTGAPVLFTG 281

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           +GE  +  EPF A   ++ I G  D
Sbjct: 282 IGETTDKFEPFRADGMASRILGMGD 306


>gi|91785263|ref|YP_560469.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           xenovorans LB400]
 gi|91689217|gb|ABE32417.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           xenovorans LB400]
          Length = 455

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK   ++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             SE       +A  A   A+    DVL++DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSEPDQKPVDIARAAVDWARRHYHDVLLVDTAGRLGIDEAMMKEITALHAELK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|148298873|ref|NP_001091776.1| putative signal recognition particle 54 kDa protein [Bombyx mori]
 gi|111608119|gb|ABH10803.1| putative signal recognition particle 54 kDa protein [Bombyx mori]
          Length = 501

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           EL+ K++ P  KP+      +P+VI+ VG+ G GKTT   KL+        K  L   DT
Sbjct: 82  ELV-KLVDPGVKPYQ-PVKGKPNVIMYVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCADT 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A DQ+K    +    F  S    D   +A       + + ++++I+DT+GR     
Sbjct: 140 FRAGAYDQVKQNCTKARIPFYGSYTEVDPVVIATTGVDMFKKQGLEMIIVDTSGRHKQEE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L   +  +   +K      P +++ V+DAT GQ    Q   F        +I+TK+DG 
Sbjct: 200 SLFEEMLAVATAIK------PDNIIFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGH 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A+GGG +  V   + P+ F+G GE I+DLEPF  K F   + G  D
Sbjct: 254 AKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFIKKLLGMGD 299


>gi|15214760|gb|AAH12512.1| Srpr protein [Mus musculus]
          Length = 359

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 153/323 (47%), Gaps = 42/323 (13%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           TKG       + +G+    S  R D + V +++ D LI  ++   +A ++ E +  K   
Sbjct: 34  TKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 93

Query: 77  KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125
           K + +   V   V + + + L+ + +P           +     RP+V+   GVNGVGK+
Sbjct: 94  KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKS 153

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172
           T + K+S  + + G  V++AA DTFR+ A++QL+    R +A                  
Sbjct: 154 TNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEK 213

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  
Sbjct: 214 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 267

Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVT 281
           VL V +A  G  A+ Q+  F      H++A T     G+++TK D    + G  I +   
Sbjct: 268 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYI 327

Query: 282 HKIPVYFLGVGEGINDLEPFVAK 304
              P+ F+G G+   DL    AK
Sbjct: 328 TSKPIVFVGTGQTYCDLRSLNAK 350


>gi|257425291|ref|ZP_05601716.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257430584|ref|ZP_05606966.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433345|ref|ZP_05609703.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436187|ref|ZP_05612234.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282914013|ref|ZP_06321800.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924058|ref|ZP_06331734.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus C101]
 gi|293510006|ref|ZP_06668714.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526593|ref|ZP_06671278.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257271748|gb|EEV03886.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257278712|gb|EEV09331.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281438|gb|EEV11575.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284469|gb|EEV14589.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314030|gb|EFB44422.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus C101]
 gi|282322081|gb|EFB52405.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|290920665|gb|EFD97728.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291466950|gb|EFF09468.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M809]
          Length = 455

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 135/269 (50%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V ++ ++ +  +    DV       Q+V+  V + + K++   +   N   
Sbjct: 39  LLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+++VG+ G GKTT  GKL+  M      K ML A D +R AAI+QL+    +  
Sbjct: 98  NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K   
Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+ ++ V+D+ TGQ+A+   E F      TG+ +TK+DG  RGG  + I    + P+
Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGVALSIRSVTQKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+ E ++ LE F  +  ++ I G  D
Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300


>gi|120609564|ref|YP_969242.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidovorax
           citrulli AAC00-1]
 gi|120588028|gb|ABM31468.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidovorax
           citrulli AAC00-1]
          Length = 459

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QLK    +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S        +A  A   A+    DVL++DTAGRL  +  LM  I ++   L    
Sbjct: 157 AEWFPSTPEQKPLDIARAAIDHARRHYFDVLLVDTAGRLAIDEALMNEIKELHAALN--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +      P+
Sbjct: 214 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GV E I+ LE F A+  +  + G  D
Sbjct: 271 KFAGVSEKIDGLEVFDAERHAGRVLGMGD 299


>gi|228474956|ref|ZP_04059684.1| signal recognition particle protein [Staphylococcus hominis SK119]
 gi|314936601|ref|ZP_07843948.1| signal recognition particle protein [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270941|gb|EEK12329.1| signal recognition particle protein [Staphylococcus hominis SK119]
 gi|313655220|gb|EFS18965.1| signal recognition particle protein [Staphylococcus hominis subsp.
           hominis C80]
          Length = 456

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 109/207 (52%), Gaps = 9/207 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  M      K ML A D +R AAI+QL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQLDVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +   A + A+ + +D +IIDTAGRLH +  LM  +  +  + K      
Sbjct: 161 YSEGDQVKPQQIVDNALRYAKEEHLDFVIIDTAGRLHIDETLMNELADVKEISK------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI-VVTHKIPVYF 288
           P  ++ V+DA TGQ+A+   + F      TG+ +TK+DG  RGG  + I  VTHK P+ F
Sbjct: 215 PDEIMLVVDAMTGQDAVNVAQSFDEQLDVTGVTLTKLDGDTRGGAALSIRAVTHK-PIKF 273

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G+ E ++ LE F  +  ++ I G  D
Sbjct: 274 VGMSEKMDGLELFHPERMASRILGMGD 300


>gi|257791128|ref|YP_003181734.1| signal recognition particle protein [Eggerthella lenta DSM 2243]
 gi|317488142|ref|ZP_07946717.1| signal recognition particle protein [Eggerthella sp. 1_3_56FAA]
 gi|325832949|ref|ZP_08165622.1| signal recognition particle protein [Eggerthella sp. HGA1]
 gi|257475025|gb|ACV55345.1| signal recognition particle protein [Eggerthella lenta DSM 2243]
 gi|316912770|gb|EFV34304.1| signal recognition particle protein [Eggerthella sp. 1_3_56FAA]
 gi|325485814|gb|EGC88278.1| signal recognition particle protein [Eggerthella sp. HGA1]
          Length = 472

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 130/281 (46%), Gaps = 16/281 (5%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           ++D +RE +   L+ +D+   V +  V    TK    D  V   L     +I  +L  L+
Sbjct: 27  INDAMRE-IRMALLEADVNFKVVKSFVAR--TKERCLDAEVLDSLTPAQNVIKIVLDELT 83

Query: 101 KPFNWD-----FSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           +           S R P+VI++VG+ G GKTT   KL+ ++       +L A D +R AA
Sbjct: 84  ELLGRTDSKLVLSSRIPNVIMLVGLQGSGKTTAAAKLAYRLKQENHSPLLVACDVYRPAA 143

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            DQL+             + G D   +A E  + A     DV+I+DTAGRLH +  +M  
Sbjct: 144 ADQLETLGGEIGVRVYRGD-GQDPVKIAQEGIQDAIDNLRDVVIVDTAGRLHVDDEMMDE 202

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              + R +K      P  +L V+DA TGQ+ +     F       G+IM+KMDG ARGGG
Sbjct: 203 AENIKRAVK------PDQILMVVDAMTGQDVVNVASAFSQRVDFDGVIMSKMDGDARGGG 256

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + I      P+ F+  GE  + LE F     +  I G  D
Sbjct: 257 ALSIKQVTGKPIKFISSGEKPDSLEEFHPDRMAKRILGMGD 297


>gi|116671035|ref|YP_831968.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrobacter
           sp. FB24]
 gi|116611144|gb|ABK03868.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrobacter
           sp. FB24]
          Length = 529

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 151/317 (47%), Gaps = 29/317 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLTEADVDATVREIRRALLDADVAVPVVREFTGRVRERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E + ++L   ++      +  P +I++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPSQQIVKIVNEELVEILGGETRRIRLAKTG-PTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS----------DAAAL 181
           SK +   G   ML A D  R  A++QL++   R          G+          D  A+
Sbjct: 121 SKWLKSQGHSPMLVACDLQRPNAVNQLQVVGQRAGVPVFAPHPGATSMELDHPAGDPVAV 180

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A    ++A+ K  DV+I+DTAGRL  ++ +M    ++ R +       P+ VL V+D+  
Sbjct: 181 ARAGVEEARQKLHDVVIVDTAGRLGVDAEMMEQARQIRRAI------VPNEVLFVIDSMI 234

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+A+     F      TG++++K+DG ARGG  + +      PV F   GEG++D E F
Sbjct: 235 GQDAVNTALAFDEGVNFTGIVLSKLDGDARGGAALSVASVTGKPVMFASTGEGVDDFELF 294

Query: 302 VAKDFSAVITGCLDYGE 318
                ++ I   LD G+
Sbjct: 295 HPDRMASRI---LDMGD 308


>gi|78046894|ref|YP_363069.1| Signal recognition particle protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325924833|ref|ZP_08186268.1| Signal recognition particle protein [Xanthomonas perforans 91-118]
 gi|78035324|emb|CAJ22969.1| Signal recognition particle protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544763|gb|EGD16111.1| Signal recognition particle protein [Xanthomonas perforans 91-118]
          Length = 458

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 138/275 (50%), Gaps = 22/275 (8%)

Query: 39  RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q ++  V +
Sbjct: 21  RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   +   N +    P ++L+ G+ G GKTT +GKL+K + +   K VM+ + D 
Sbjct: 81  ELTAVMGAAATDLNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A++    F  S+       +   A   A+   VDVL++DTAGRL  + 
Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDAKKSFVDVLLVDTAGRLAIDQ 199

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +M  I  +         HA   P   L V+DA TGQ+A    + F      TG+++TK 
Sbjct: 200 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           DG ARGG  + +      P+ F+G GE  + L+ F
Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 285


>gi|225155878|ref|ZP_03724364.1| signal recognition particle protein [Opitutaceae bacterium TAV2]
 gi|224803428|gb|EEG21665.1| signal recognition particle protein [Opitutaceae bacterium TAV2]
          Length = 452

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 112/230 (48%), Gaps = 8/230 (3%)

Query: 88  VSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLA 145
           + ++IH  L+ L      + S  RP  IL+VG++G GKTT   KL K +   G  K  + 
Sbjct: 74  IVKIIHDELVRLLGEGTTELSAARPLKILMVGLHGSGKTTSTAKLGKLLKKRGYNKPFVV 133

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             D +R AAIDQL+I A +    F    +  D  A+     + A+A   D +  DTAGRL
Sbjct: 134 GCDIYRPAAIDQLEILAKQEDLGFYSDRVSKDVPAIGAAGLEAARAAGADAIFFDTAGRL 193

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             +  L+  + K+   ++      P  V  V D   GQ A+   + FH     TGLI+TK
Sbjct: 194 QIDQDLIEEVKKLRARIQ------PDEVFLVADGALGQEAVNVAKAFHEAVQLTGLILTK 247

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +DG ARGG  + I     +P+ F+G GE   D E F     ++ I G  D
Sbjct: 248 LDGDARGGAALSIKSITGVPIKFVGTGEKTADFESFYPDRLASRILGMGD 297


>gi|19746132|ref|NP_607268.1| signal recognition particle -inhibited division protein
           [Streptococcus pyogenes MGAS8232]
 gi|19748308|gb|AAL97767.1| putative signal recognition particle -inhibited division protein
           [Streptococcus pyogenes MGAS8232]
          Length = 520

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 157/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +   
Sbjct: 3   FESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       +++L  V+E +  +L   S+    D S + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTKQILKIVNEELTSILG--SETAEIDKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFK 187
           L+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D +A  +  +  +
Sbjct: 121 LANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLE 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+    D ++IDTAGRL  +  LM    + +R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 QARENHNDYVLIDTAGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F     S
Sbjct: 233 VAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGERITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|303237098|ref|ZP_07323668.1| signal recognition particle protein [Prevotella disiens FB035-09AN]
 gi|302482485|gb|EFL45510.1| signal recognition particle protein [Prevotella disiens FB035-09AN]
          Length = 447

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 111/211 (52%), Gaps = 9/211 (4%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             ++P +IL+ G+ G GKTT  GKL+  + +    K +L A D +R AAI+QLK+  +  
Sbjct: 95  LENKPAIILMSGLQGSGKTTFTGKLANLLKTKEHKKPLLVACDVYRPAAIEQLKVVGESV 154

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                      D  A+A  A ++A+A   DV+IIDTAGRL  ++       +M+  ++ L
Sbjct: 155 GVPVYSEPESKDVNAIAEHAIREAKANGNDVVIIDTAGRLAVDT-------EMMNEIESL 207

Query: 226 DPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
             H  P  VL V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I      
Sbjct: 208 KNHVNPDEVLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +  L+ F     +  I G  D
Sbjct: 268 PIKFIGTGEKMEALDVFHPNRMADRILGMGD 298


>gi|315104272|gb|EFT76248.1| signal recognition particle protein [Propionibacterium acnes
           HL050PA2]
          Length = 528

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 144/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    ++   L+ +D+ ++V ++ V  +  + + +++S      Q+++  V+E + ++L 
Sbjct: 28  DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P ++++ G+ G GKTT+ GKL++   + G   +LAA D  R  A+ Q
Sbjct: 88  GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        E G+   D   +A +A  +A+ K  DV+IIDTAGRL  ++ +MA 
Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPIQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +           P   L V+DA  GQ+A+     F    G  G+++TK+DG ARGG 
Sbjct: 207 AADIKAATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GEG+ D + F     ++ I   LD G+
Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301


>gi|302761692|ref|XP_002964268.1| hypothetical protein SELMODRAFT_82182 [Selaginella moellendorffii]
 gi|300167997|gb|EFJ34601.1| hypothetical protein SELMODRAFT_82182 [Selaginella moellendorffii]
          Length = 467

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 129/276 (46%), Gaps = 18/276 (6%)

Query: 47  EELEDLLIRSDIGVAVAQ-------KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
            E+   L+++D+   + Q       K VE+L      + +  + V +++     + ++  
Sbjct: 33  NEITHALLQADVQFKLVQALSSNVRKSVEKLAAGHDKRHIIQKAVFHEL-----RAMLDA 87

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            KP       R +V+++VG+ G GKTT   K +      G    L   DTFR+ A DQLK
Sbjct: 88  GKPSFTPTKGRTNVVMLVGLQGCGKTTTCTKYALHYRKKGFNPALVCADTFRAGAFDQLK 147

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A +    F  S   +D   +A E  ++    K D++I+DT+GR    + L   + ++ 
Sbjct: 148 QNATKVKIPFYGSYTETDPVVIAQEGVRKFADAKHDLIILDTSGRHKQENALFEEMRQLA 207

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
                     P  ++ V+D++ GQ A  Q   F   A    +I+TK+DG A+GGG +  V
Sbjct: 208 AATN------PDLIIFVMDSSIGQAANDQALAFRESAKVGAVIITKIDGHAKGGGALSAV 261

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              K P+ FLG GE  +  E F +K F + + G  D
Sbjct: 262 AATKSPIIFLGTGEKADAFETFESKAFVSRLLGMGD 297


>gi|269860268|ref|XP_002649856.1| signal recognition particle subunit FFH/SRP54 [Enterocytozoon
           bieneusi H348]
 gi|220066696|gb|EED44169.1| signal recognition particle subunit FFH/SRP54 [Enterocytozoon
           bieneusi H348]
          Length = 475

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 134/263 (50%), Gaps = 21/263 (7%)

Query: 62  VAQKIVEELLTKRYAKDVSV-QRVLYD-VSELIHKMLMP--LSKPFNWDFSHRPHVILVV 117
           + QKI  ++  +     + + Q+ ++D +SELI   + P  +SK          HVI+ V
Sbjct: 61  LNQKINNQISNQTNKNKIKIIQQTVFDCLSELIDPQVSPYKISK-------GEQHVIVFV 113

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE---- 173
           G+ G GKTT I K ++     G KV +   DTFR+ A DQ+K  A++ +  +  ++    
Sbjct: 114 GLQGSGKTTSICKYARFYRSKGFKVGIVCADTFRAGAYDQIKQNANKINVAYWGNQDEDN 173

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D  ++A +     +    +++++DT+GR   +  L   I  ++  +       P+++
Sbjct: 174 TEVDPVSIARKGVSHFKRHDYELILVDTSGRHVQSEDLFLEIQNLVTSIN------PNNI 227

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + V+DA  GQ+A  QV+ F       G+I+TK+DG  + GG +  +   K PV F+G GE
Sbjct: 228 IFVIDAGIGQSAEDQVQGFKKAINIGGIILTKIDGAEKAGGALSSIAVTKCPVEFIGTGE 287

Query: 294 GINDLEPFVAKDFSAVITGCLDY 316
            + D E F +K F + + G  ++
Sbjct: 288 KMEDFERFNSKIFISKLLGIPNF 310


>gi|169624365|ref|XP_001805588.1| hypothetical protein SNOG_15441 [Phaeosphaeria nodorum SN15]
 gi|160705155|gb|EAT77106.2| hypothetical protein SNOG_15441 [Phaeosphaeria nodorum SN15]
          Length = 533

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 18/299 (6%)

Query: 27  KLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVA----QKIVEELLTKRYAKD 78
           ++   + D+  S  LD+   E    E+ + L+ +D+ V +     Q I   +  K  A +
Sbjct: 9   RINAAVNDLTRSPNLDEKAFEAMVKEISNALVEADVNVKLVMNLRQSIKRSVDFKHLAPN 68

Query: 79  VSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           V+ +RV+      EL+ K++ P ++PF      + +VI+ VG+ G GKTT   KL++   
Sbjct: 69  VNKKRVIQKAVFDELV-KLVDPHAEPFKPK-KGKSNVIMFVGLQGSGKTTTCTKLARWYQ 126

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             G K  L   DTFR+ A DQLK  A +    +  S   +D   +A E  ++ + ++ ++
Sbjct: 127 ARGFKACLVCADTFRAGAFDQLKQNATKAKIPYFGSHTQTDPVIVAAEGVEKFKKERFEI 186

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +I+DT+GR      L     +M+++   +    P   + VLDAT GQ A  Q   F   A
Sbjct: 187 IIVDTSGRHRQEKDL---FDEMVQIQNAVQ---PDQTIMVLDATIGQAAEGQARAFKDAA 240

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +++TK DG A GGG I  V     P+ F+G GE + DLE F  + F + + G  D
Sbjct: 241 DFGAIVITKTDGAAAGGGAISAVAATHTPIVFIGNGEHMLDLERFSPEPFVSKLLGMGD 299


>gi|152980389|ref|YP_001354675.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp.
           Marseille]
 gi|151280466|gb|ABR88876.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp.
           Marseille]
          Length = 455

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 129/259 (49%), Gaps = 17/259 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS---------VQRVLYDVSELIHKMLMPLSKPF 103
           L+ +D+ +   ++ +  +  K   +DV          V  V  +++ ++   L P +   
Sbjct: 38  LLEADVALPAVREFISRVKEKAMGEDVVGSLTPGQALVGVVQRELAAIMGADLGPEASQL 97

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWA 162
           N+  +  P +IL+ G+ G GKTT +GKL+K + +   K V+  + D +R AAI QL+   
Sbjct: 98  NF-ATQPPAIILMAGLQGAGKTTTVGKLAKYLREQKKKKVLTVSADVYRPAAIGQLETVT 156

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +  ADF  S+       +A  A   A+    DVLIIDTAGRL  +  +M  I  +   +
Sbjct: 157 AQVGADFFPSQATDKPVDIALAALDYAKRHYHDVLIIDTAGRLGIDEAMMHEIKALHAAV 216

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           K      P   L V+DA  GQ+A+   + F      TG+++TK+DG +RGG  + +    
Sbjct: 217 K------PIETLFVVDAMLGQDAINTAKAFSDALPLTGIVLTKLDGDSRGGAALSVRHIT 270

Query: 283 KIPVYFLGVGEGINDLEPF 301
             P+ F GV E ++ LE F
Sbjct: 271 GKPIKFAGVAEKLDGLEAF 289


>gi|323344206|ref|ZP_08084432.1| signal recognition particle protein [Prevotella oralis ATCC 33269]
 gi|323094935|gb|EFZ37510.1| signal recognition particle protein [Prevotella oralis ATCC 33269]
          Length = 449

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 108/210 (51%), Gaps = 7/210 (3%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            S RP ++L+ G+ G GKTT  GKL+  + S      +L A D +R AAIDQLK+  ++ 
Sbjct: 95  LSGRPAIVLMSGLQGSGKTTFSGKLANMLKSKQKRNPLLVACDVYRPAAIDQLKVVGEQV 154

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                      +   +A  A K+A+AK  DV+I+DTAGRL  +  +M  I ++   L   
Sbjct: 155 GVPVYSEPDSKNVIEIATHAVKEAKAKGNDVVIVDTAGRLAIDEEMMTEISELKNALN-- 212

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I      P
Sbjct: 213 ----PDETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKP 268

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G GE +  ++ F     +  I G  D
Sbjct: 269 IKFVGTGEKMEAIDVFHPSRMADRILGMGD 298


>gi|225022019|ref|ZP_03711211.1| hypothetical protein CORMATOL_02051 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681063|ref|ZP_07403870.1| signal recognition particle protein [Corynebacterium matruchotii
           ATCC 14266]
 gi|224945216|gb|EEG26425.1| hypothetical protein CORMATOL_02051 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659268|gb|EFM48768.1| signal recognition particle protein [Corynebacterium matruchotii
           ATCC 14266]
          Length = 538

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 152/318 (47%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ + S  ++ +     V  E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FESLSDRLSAALSGLRSKGKVTEADVNTVSREIRLALLEADVSLPVVRGFIKRIKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      ++V+  V+E +  +L   ++  N      P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSKALNPAEQVIKIVNEELTTILGGETRRMNVS-KKPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-----------TSADFVCSEIGS---D 177
           +  + + G   +L A D  R  A+ QL+I  +R           TS D +  E+G+   D
Sbjct: 121 AYSLKEQGHTPILVACDLQRPGAVQQLQIVGERAGVPTFAPDPGTSLDTLEHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+A     +A+ KK D +I+DTAGRL  +  LM    + IR     D   P  V  V+
Sbjct: 181 PVAVARAGVAEARQKKHDYVIVDTAGRLGIDETLMTQ-ARNIR-----DAIQPDEVFFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F      TG+++TK+DG ARGG  + I      P+ F   GE + D
Sbjct: 235 DAMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKMTD 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     +  I G  D
Sbjct: 295 FDVFHPDRMANRILGMGD 312


>gi|27229036|ref|NP_080406.1| signal recognition particle receptor subunit alpha [Mus musculus]
 gi|47117310|sp|Q9DBG7|SRPR_MOUSE RecName: Full=Signal recognition particle receptor subunit alpha;
           Short=SR-alpha; AltName: Full=Docking protein alpha;
           Short=DP-alpha
 gi|12836553|dbj|BAB23706.1| unnamed protein product [Mus musculus]
 gi|26332409|dbj|BAC29922.1| unnamed protein product [Mus musculus]
          Length = 636

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 332 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 391

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 392 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 451

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R +A                    G DAA +A EA   A+ + 
Sbjct: 452 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 511

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 512 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 565

Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 566 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 625

Query: 303 AK 304
           AK
Sbjct: 626 AK 627


>gi|257427951|ref|ZP_05604349.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|293501045|ref|ZP_06666896.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|257274792|gb|EEV06279.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|291096050|gb|EFE26311.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 58-424]
          Length = 455

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 135/269 (50%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V ++ ++ +  +    DV       Q+V+  V + + K++   +   N   
Sbjct: 39  LLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+++VG+ G GKTT  GKL+  M      K ML A D +R AAI+QL+    +  
Sbjct: 98  NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQID 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +   A K A+ + +D +IIDTAGRLH +  LM  + ++  + K   
Sbjct: 158 IPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+ ++ V+D+ TGQ+A+   E F      TG+ +TK+DG  RGG  + I    + P+
Sbjct: 215 ---PNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGVALSIRSVTQKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+ E ++ LE F  +  ++ I G  D
Sbjct: 272 KFVGMSEKLDGLELFHPERMASRILGMGD 300


>gi|149027816|gb|EDL83276.1| signal recognition particle receptor ('docking protein') [Rattus
           norvegicus]
          Length = 622

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 318 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 377

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 378 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 437

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R +A                    G DAA +A EA   A+ + 
Sbjct: 438 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 497

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 498 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 551

Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 552 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 611

Query: 303 AK 304
           AK
Sbjct: 612 AK 613


>gi|297626601|ref|YP_003688364.1| GTP binding signal recognition particle protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922366|emb|CBL56938.1| GTP binding signal recognition particle protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 523

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 138/281 (49%), Gaps = 14/281 (4%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V ++ V ++  + +  ++S      Q+++  V+E +  +L 
Sbjct: 28  DATTREIRIALLEADVALPVVKEFVAKVKERAHGLELSKALNPTQQIVKIVNEELIDILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL   + + G   +L A D  R  A+ Q
Sbjct: 88  GRTREIRFSKGTDPTVIMLAGLQGAGKTTLAGKLGHWLREQGHSPVLVAADLQRPNAVQQ 147

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        + G+   D   ++ E+  +A+ K  DV+I+DTAGRL  +  +MA 
Sbjct: 148 LQVIGERAGVPVFAPQPGNGVGDPVQVSRESLDEARHKLYDVIIVDTAGRLGVDEEMMAQ 207

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +   +       P+  L V+DA  GQ+A+   + F    G  G++++K+DG ARGG 
Sbjct: 208 AHDIKAAV------TPNETLFVVDAMIGQDAVNTAKAFEQGVGIDGVVLSKLDGDARGGA 261

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + I      P+ F   GE + D + F     ++ I G  D
Sbjct: 262 ALSIARVIGKPIMFASNGENLTDFDLFHPDRMASRILGMGD 302


>gi|282877590|ref|ZP_06286405.1| signal recognition particle protein [Prevotella buccalis ATCC
           35310]
 gi|281300162|gb|EFA92516.1| signal recognition particle protein [Prevotella buccalis ATCC
           35310]
          Length = 445

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 7/196 (3%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRT 165
              +P +IL+ G+ G GKTT  GKL+  +     K  +L A D +R AAI+QLK+   + 
Sbjct: 95  LESKPAIILMSGLQGSGKTTFSGKLANLLKSKQRKNPLLVACDVYRPAAIEQLKVVGGQV 154

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             +        D  A+A +A +QA+AK  DV+IIDTAGRL  +  +M  I ++       
Sbjct: 155 GVEVYSEPDNKDVVAIAKQAIQQAKAKGNDVVIIDTAGRLAVDEEMMDEIARL------K 208

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           D   P   L V+DA TGQ+A+   + F+      G+++TK+DG  RGG  + I      P
Sbjct: 209 DAVHPDETLFVVDAMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAALSIRTVVTKP 268

Query: 286 VYFLGVGEGINDLEPF 301
           + F+G GE +  ++ F
Sbjct: 269 IKFVGTGEKMEAIDVF 284


>gi|157825358|ref|YP_001493078.1| Signal recognition particle protein [Rickettsia akari str.
           Hartford]
 gi|157799316|gb|ABV74570.1| Signal recognition particle protein [Rickettsia akari str.
           Hartford]
          Length = 449

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 148/290 (51%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAKDVSV-QRVLYDVS 89
           I++  ++D+ +R+ +   L+ SD+ + V +  + E+    L     K VS  Q ++  + 
Sbjct: 21  ILTEAQIDNAMRD-IRVALLESDVALPVIKDFIAEVKKNALGHEVIKSVSPGQMIIKIIH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P +  L+VG+ G GKTT  GKL+ ++ +   KV+L + D
Sbjct: 80  EEMINLLASSESETKLNLNSKPPINFLMVGLQGSGKTTASGKLALRLKNQNKKVLLVSLD 139

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL I A+    + +    G     +   A  +A+    DV+I DTAGR   +
Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEQPLDIVTRAIAEAKISAYDVVIYDTAGRTQID 199

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M     +  +++      P   L V+D+ TGQ+A+     F+     +GLI++++DG
Sbjct: 200 QEMMEEALAIKNIVE------PTETLLVIDSMTGQDAVVTASNFNKKLEISGLILSRIDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            ++GG  + +    K P+ FL  GE + DLE F A+  ++ I   LD G+
Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGEKLTDLEEFNAERLASRI---LDMGD 300


>gi|295094758|emb|CBK83849.1| signal recognition particle protein [Coprococcus sp. ART55/1]
          Length = 448

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 150/304 (49%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     + S   L +D V+E ++++   L+ +D+   V +  V+ +  +   
Sbjct: 3   FDSLSDKLQNVFKKLRSKGVLTEDDVKEAMKEVKRALLEADVNFKVVKSFVKSVSDRAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V         V+  V E + K++           S+   +I++ G+ G GKTT   KL
Sbjct: 63  EEVLKGLNPGHMVIKIVKEEMDKLMGSEMTEIKLRPSNEITIIMMCGLQGAGKTTTAAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +  + G K +L A D +R AAI QL++  ++           +    +A  A + A  
Sbjct: 123 AYQFKNKGKKPLLVACDVYRPAAIKQLQVNGEKVGVPVFAMGDNNKPLDIAKAAVQHAAK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             ++++ +DTAGRLH +  +M    ++  + + LD    +++L V D+ TGQ+A+     
Sbjct: 183 NNINLVFLDTAGRLHVDEDMM---NELAEIKENLD--IAYTILTV-DSMTGQDAVNVATT 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + I      P+ + G+GE + DLEPF     ++ I 
Sbjct: 237 FNDKIGIDGVILTKLDGDTRGGAALSIKAVTGKPILYSGMGEKLTDLEPFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|303254469|ref|ZP_07340574.1| signal recognition particle protein [Streptococcus pneumoniae
           BS455]
 gi|303258923|ref|ZP_07344902.1| signal recognition particle protein [Streptococcus pneumoniae
           SP-BS293]
 gi|303264276|ref|ZP_07350196.1| signal recognition particle protein [Streptococcus pneumoniae
           BS397]
 gi|302598555|gb|EFL65596.1| signal recognition particle protein [Streptococcus pneumoniae
           BS455]
 gi|302639866|gb|EFL70322.1| signal recognition particle protein [Streptococcus pneumoniae
           SP-BS293]
 gi|302646088|gb|EFL76315.1| signal recognition particle protein [Streptococcus pneumoniae
           BS397]
          Length = 523

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 108/204 (52%), Gaps = 11/204 (5%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D     
Sbjct: 105 MMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DVPVFA 162

Query: 174 IGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +G++  A  +  +  +QAQ    D ++IDTAGRL  + +LM      +R +K L    P+
Sbjct: 163 LGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLM----NELRDVKAL--AQPN 216

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      P+ F G 
Sbjct: 217 EILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGT 276

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE I D+E F     S+ I G  D
Sbjct: 277 GEKITDIETFHPDRMSSRILGMGD 300


>gi|18256022|gb|AAH21839.1| Signal recognition particle receptor ('docking protein') [Mus
           musculus]
          Length = 636

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 332 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 391

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 392 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 451

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R +A                    G DAA +A EA   A+ + 
Sbjct: 452 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 511

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 512 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 565

Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 566 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 625

Query: 303 AK 304
           AK
Sbjct: 626 AK 627


>gi|157150208|ref|YP_001450412.1| signal recognition particle protein [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075002|gb|ABV09685.1| signal recognition particle protein [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 524

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+    D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKTNHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|166713052|ref|ZP_02244259.1| signal recognition particle protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 458

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 138/275 (50%), Gaps = 22/275 (8%)

Query: 39  RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q ++  V +
Sbjct: 21  RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   +   N +    P ++L+ G+ G GKTT +GKL+K + +   K VM+ + D 
Sbjct: 81  ELTAVMGAAAADLNLNVPA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A++    F  S+       +   A   A+   VDVL++DTAGRL  + 
Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDQ 199

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +M  I  +         HA   P   L V+DA TGQ+A    + F      TG+++TK 
Sbjct: 200 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           DG ARGG  + +      P+ F+G GE  + L+ F
Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 285


>gi|308173560|ref|YP_003920265.1| signal recognition particle-like (SRP) GTPase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606424|emb|CBI42795.1| signal recognition particle-like (SRP) GTPase [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553507|gb|AEB23999.1| signal recognition particle protein [Bacillus amyloliquefaciens
           TA208]
 gi|328911701|gb|AEB63297.1| signal recognition particle-like (SRP) GTPase [Bacillus
           amyloliquefaciens LL3]
          Length = 446

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+ +  D +I+DTAGRLH +  LM  +  +  V      
Sbjct: 159 PVFSLGDQVSPVEIARQAIEKAKEEHHDYVILDTAGRLHIDHELMDELSGVKEVAN---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+D+ TGQ+A+   + F+   G TG+++TK+DG  RGG  + I    + P+ 
Sbjct: 215 --PEEIFLVVDSMTGQDAVNVAKSFNDQLGLTGVVLTKLDGDTRGGAALSIRAVTETPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G+GE ++ LE F  +  ++ I G  D
Sbjct: 273 FAGMGEKLDALEAFHPERMASRILGMGD 300


>gi|291454407|ref|ZP_06593797.1| signal recognition particle protein [Streptomyces albus J1074]
 gi|291357356|gb|EFE84258.1| signal recognition particle protein [Streptomyces albus J1074]
          Length = 568

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 140/284 (49%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++++  +   ++VS      Q+++  V+E +  +L 
Sbjct: 80  DATAREIRIALLEADVALPVVRAFIKQVKERALGEEVSKALNPAQQIIKIVNEELVGILG 139

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL K +   G   +L A D  R  A++Q
Sbjct: 140 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGKWLQGQGHTPLLVAADLQRPNAVNQ 198

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++   A+ K+ DV+++DTAGRL  +  LM  
Sbjct: 199 LSVVAERAGVGIFAPEPGNGVGDPVQVAKDSIAHARTKQYDVVVVDTAGRLGIDQELMQQ 258

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D   P  VL V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 259 AAD-IR-----DAVQPDEVLFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 312

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I       + F   GE + D + F     ++ I   LD G+
Sbjct: 313 ALSIAHVTGKQIMFASNGEKLEDFDAFHPDRMASRI---LDMGD 353


>gi|262282312|ref|ZP_06060080.1| signal recognition particle protein [Streptococcus sp. 2_1_36FAA]
 gi|262261603|gb|EEY80301.1| signal recognition particle protein [Streptococcus sp. 2_1_36FAA]
          Length = 524

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    +   D 
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQI--DV 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G++  A  +  +  +QA+    D ++IDTAGRL  +  LM  +   ++ L     
Sbjct: 159 PVFALGTEVPAVEIVRQGLEQAKVNHNDYVLIDTAGRLQIDEKLMQELSD-VKALAN--- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+DA  GQ A      F++    TG+I+TK+DG  RGG  + +      P+ 
Sbjct: 215 --PNEILLVVDAMIGQEAANVAREFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|103488205|ref|YP_617766.1| signal recognition particle protein [Sphingopyxis alaskensis
           RB2256]
 gi|98978282|gb|ABF54433.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sphingopyxis
           alaskensis RB2256]
          Length = 484

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 140/269 (52%), Gaps = 13/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  V+++      ++V  SV   Q+V+  V++ + +ML   +   +   
Sbjct: 38  LLEADVALPVVRSFVDQVTELAIGQNVLRSVTPGQQVVKIVNDALTEMLGSETAELDLAV 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VI++VG+ G GKTT   K++K++ +   K V++A+ D  R AA +QL +   +  
Sbjct: 98  AP-PAVIMMVGLQGSGKTTTTAKIAKRLREKERKKVLMASLDVNRPAAQEQLAVLGQQID 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +   +G     +A  A + A+ +  DVL++DTAGRLH +  LM  +  + R      
Sbjct: 157 VATLPIIVGQQPVEIAQRALQAAKLQGYDVLMLDTAGRLHVDQQLMDEMQAVSRTAN--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D+ TGQ+A++  + F      TG+++T+MDG ARGG  + +      P+
Sbjct: 214 ---PAETLLVVDSLTGQDAVQVAQRFTDQVPLTGVVLTRMDGDARGGAALSMRAVTGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G GE ++ LE F     +  I G  D
Sbjct: 271 KFAGTGEKLDGLELFQPSRIAGRILGMGD 299


>gi|260831512|ref|XP_002610703.1| hypothetical protein BRAFLDRAFT_202369 [Branchiostoma floridae]
 gi|229296070|gb|EEN66713.1| hypothetical protein BRAFLDRAFT_202369 [Branchiostoma floridae]
          Length = 629

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 33/231 (14%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            +RP+ I   GVNGVGK+T + K+   + + G +V++AA DTFR+ A++QL+  A R +A
Sbjct: 407 QNRPYTITFCGVNGVGKSTNLAKICFWLVENGFRVLIAACDTFRAGAVEQLRTHARRMAA 466

Query: 168 -------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
                               G DAA +A EA   A+ +++DV+++DTAGR+ +N  LM  
Sbjct: 467 LHPPEHHSGVKMVQLYEKGYGKDAAGIAMEAINFAREQRIDVVLVDTAGRMQDNEPLMRA 526

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT---------GLIMT 264
           + K+I+V      + P  VL V +A  G +++ Q+  F+ A+A  +         G+++T
Sbjct: 527 LSKLIKV------NQPELVLFVGEALVGNDSVDQLTKFNQALADFSSMENPRLIDGILLT 580

Query: 265 KMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           K D    + G  I +  T   PV F+G G+   DL+   A +  AV+   L
Sbjct: 581 KFDTIDDKVGAAISMTYTTGQPVVFVGTGQTYTDLK---ALNVQAVVNALL 628


>gi|257784652|ref|YP_003179869.1| signal recognition particle protein [Atopobium parvulum DSM 20469]
 gi|257473159|gb|ACV51278.1| signal recognition particle protein [Atopobium parvulum DSM 20469]
          Length = 459

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 133/273 (48%), Gaps = 12/273 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+   V ++ V    E+ +T    + +S  Q V+  V + +  +L      
Sbjct: 33  EIRMALLEADVNYKVVKEFVGRCKEQCMTADVLESLSPAQNVVRIVLDELTALLGSTESK 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                +  P+VI++VG+ G GKTT   KL+  +   G   +LAA D  R AA DQL+   
Sbjct: 93  LTLAQNRIPNVIMLVGLQGSGKTTAAAKLAYLLKSQGKNPLLAACDVHRPAAADQLETLG 152

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                     + G DA A+A EA ++A     D++I+DTAGRL  +  +M     + R +
Sbjct: 153 SEIGVPVYRGD-GKDAVAIASEAIQEAVDHLNDLVIVDTAGRLQIDEEMMEEAVAIKRAV 211

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           K      P  +L V+DA TGQ+ +  V  F       G+IM+K+DG ARGGG + +    
Sbjct: 212 K------PDQILMVVDAMTGQDIVNVVSTFAERVDFDGVIMSKLDGDARGGGALSVREVT 265

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+ +GE  + LE F     +  I G  D
Sbjct: 266 GKPIKFVSMGEKPDSLEVFHPDRMAKRILGMGD 298


>gi|56964059|ref|YP_175790.1| signal recognition particle GTPase [Bacillus clausii KSM-K16]
 gi|56910302|dbj|BAD64829.1| signal recognition particle GTPase [Bacillus clausii KSM-K16]
          Length = 452

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT   KL+  +      K +L A D +R AAI QL+    + +   
Sbjct: 101 PTVVMMVGLQGAGKTTTTAKLANHLRKKHNRKPLLVACDVYRPAAIQQLETLGKQLNMPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 ++   +A EA   A+A+  D ++IDTAGRLH +  LMA +  M   +       
Sbjct: 161 FSKGTDANPVDIAKEAVAAAKAEHHDYVLIDTAGRLHVDETLMAELQDMKAAV------T 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +L V+D+ TGQ+A+   E F+     TG ++TK+DG  RGG  I I      P+ F 
Sbjct: 215 PDEILLVVDSMTGQDAVNVAESFNNQLDVTGAVLTKLDGDTRGGAAISIKAVTNTPIKFA 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+GE I+ LEPF     ++ I G  D
Sbjct: 275 GMGEKIDQLEPFHPDRMASRILGMGD 300


>gi|324999618|ref|ZP_08120730.1| signal recognition particle protein [Pseudonocardia sp. P1]
          Length = 522

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 144/315 (45%), Gaps = 27/315 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL D        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDSLSERLGSTLRDLRGKGRLSDADIDATAREIRIALLEADVALPVVRGFIARIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++  N      P VI++ G+ G GKTT+ GKL
Sbjct: 62  SEVSQALNPAQQVVKIVNEELVTILGGETRRLNL-AKEPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-----------DAAA 180
           ++ +   G   +L A D  R  A++QL+I  +R          G+           D   
Sbjct: 121 ARWLKGQGHTPLLVACDLQRPNAVNQLQIVGERAGVQTFAPHPGATGSGELPEGPGDPVG 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A      A+ K+ DV+++DTAGRL  +  LM     +   +       P  VL V+DA 
Sbjct: 181 VARGGIAHAREKQYDVVVVDTAGRLGVDEELMRQASDIRTAVD------PDEVLFVVDAM 234

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ+A+   E F    G TG+++TK+DG ARGG  + +      P+ F   GE + D + 
Sbjct: 235 IGQDAVATAEAFRDGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFASNGEKLEDFDV 294

Query: 301 FVAKDFSAVITGCLD 315
           F     S+ I G  D
Sbjct: 295 FHPDRMSSRILGMGD 309


>gi|328865257|gb|EGG13643.1| signal recognition particle receptor alpha subunit [Dictyostelium
           fasciculatum]
          Length = 607

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 36/284 (12%)

Query: 46  REELEDLLIR-------SDIGVAVAQKIVEELLTKRYAKDVSVQR-----VLYDVSELIH 93
           +E+LE +L +        ++ + +A+K+VE + +    K +S  +     V   + E + 
Sbjct: 317 KEDLEPVLQKFVGHLTSKNVALDIAEKLVESIGSSLEGKKLSTFQGVTTVVKTAMEESLT 376

Query: 94  KMLMP-----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++L P     + K        RP+ I+  GVNGVGK+T + K+   +   G +VMLAA D
Sbjct: 377 RILTPKKHIDILKDIQLLKGSRPYAIVFSGVNGVGKSTNLAKVCYWLKANGHRVMLAACD 436

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFRS AI+QL   A R   +      G DAA++A +A + A+  K DV++IDT GR+ NN
Sbjct: 437 TFRSGAIEQLGTHAARLDVELFERGYGKDAASIAGDAIEYARQTKHDVVLIDTTGRMQNN 496

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------------HAVA 256
             LM  + K++      + +    VL V +A  G + + Q+  F            + V 
Sbjct: 497 EPLMRALSKLV------NQNTIDLVLFVGEALVGNDGVDQLTKFDKSLSLLSDASKNNVR 550

Query: 257 GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
              G+I+TK D    + G  I +V +   P+ FLG G+   DL+
Sbjct: 551 TIDGIILTKFDTIDDKVGAAISMVYSTGHPIIFLGTGQNYTDLK 594


>gi|307330030|ref|ZP_07609181.1| signal recognition particle protein [Streptomyces violaceusniger Tu
           4113]
 gi|306884291|gb|EFN15326.1| signal recognition particle protein [Streptomyces violaceusniger Tu
           4113]
          Length = 514

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 140/284 (49%), Gaps = 21/284 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++++  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRSFIKQVKERSLGAEVSQALNPAQQVIKIVNEELVGILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL + +   G   +L A D  R  A++Q
Sbjct: 88  GEARRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKGQGHAPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM-- 212
           L + A+R        E G+   D   +A ++ + A+ K+ DV+I+DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVAVFAPEPGNGVGDPVKVAQDSIEFARTKQHDVVIVDTAGRLGIDEELMRQ 206

Query: 213 -AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
            A I   +R         P  VL V+DA  GQ+A+   E F    G  G++++K+DG AR
Sbjct: 207 AADIRDAVR---------PDEVLFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDAR 257

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG  + I       + F   GE ++D + F     ++ I G  D
Sbjct: 258 GGAALSIAHVTGRQIMFASNGEKLDDFDAFYPDRMASRILGMGD 301


>gi|290957104|ref|YP_003488286.1| signal recognition particle protein [Streptomyces scabiei 87.22]
 gi|260646630|emb|CBG69727.1| signal recognition particle protein [Streptomyces scabiei 87.22]
          Length = 516

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 143/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++ +  +    DVS      Q+VL  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIKNVKERALGSDVSKALNPAQQVLKIVNEELVGILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +   + P VI++ G+ G GKTT+ GKL   + + G   +L A D  R  A++Q
Sbjct: 88  GETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKLGHWLKEQGHSPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A++K  D++++DTAGRL  +  +M  
Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFAKSKVHDIVVVDTAGRLGIDQEMMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GE +++ + F     ++ I   LD G+
Sbjct: 261 ALSIASVTGKPIMFASNGEKLDEFDAFHPDRMASRI---LDMGD 301


>gi|242037271|ref|XP_002466030.1| hypothetical protein SORBIDRAFT_01g050330 [Sorghum bicolor]
 gi|241919884|gb|EER93028.1| hypothetical protein SORBIDRAFT_01g050330 [Sorghum bicolor]
          Length = 624

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 28/278 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104
           L+D L+  ++   +A+K+ E +      K + S  R+   V   +   L+ +  P     
Sbjct: 345 LKDRLMAKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQTAMEDALLRILTPRRSID 404

Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                       RP+VI+ VGVNGVGK+T + K++  +    L V LAA DTFRS A++Q
Sbjct: 405 ILRDVHAAKERGRPYVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVTLAACDTFRSGAVEQ 464

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A R            D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K
Sbjct: 465 LRTHARRLQIPIFEKGYEKDPAVVAREAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSK 524

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-------AVAGTT---GLIMTKMD 267
           +I +      ++P  VL V +A  G +A+ Q+  F+       AV       G+++TK D
Sbjct: 525 LINL------NSPDLVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTARLIDGILLTKFD 578

Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               + G  + +V     PV F+G G+   DL+    K
Sbjct: 579 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 616


>gi|314984434|gb|EFT28526.1| signal recognition particle protein [Propionibacterium acnes
           HL005PA1]
          Length = 528

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 144/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    ++   L+ +D+ ++V ++ V  +  + + +++S      Q+++  V+E + ++L 
Sbjct: 28  DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P ++++ G+ G GKTT+ GKL++   + G   +LAA D  R  A+ Q
Sbjct: 88  GQTRTVRFAKTP-PTIVMLAGLQGAGKTTLAGKLARWFKEEGHSPLLAACDLQRPNAVTQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        E G+   D   +A +A  +A+ K  DV+IIDTAGRL  ++ +MA 
Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +           P   L V+DA  GQ+A+     F    G  G+++TK+DG ARGG 
Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + +      P+ F   GEG+ D + F     ++ I   LD G+
Sbjct: 261 ALSLARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301


>gi|329764770|ref|ZP_08256364.1| GTP-binding signal recognition particle [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329138734|gb|EGG42976.1| GTP-binding signal recognition particle [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 441

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 150/301 (49%), Gaps = 25/301 (8%)

Query: 28  LKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRY-------- 75
           L++ I  I+ S  +D+ + +EL    +  L++SD+ V +  +I ++L  +          
Sbjct: 9   LRDAIKKIVKSSGIDEELIKELSKDVQRALLQSDVNVRLVLEITKQLEARSLNETPPPGL 68

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKK 134
           ++   + ++LYD      ++   L K  ++DF  ++ + I+++G+ G GKTTV  KL+K 
Sbjct: 69  SRKDHIVKILYD------ELAKLLGKETDFDFKPNKQNKIIMLGIQGSGKTTVTAKLAKF 122

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           ++  G  V +   DT+R  A+ QLK   ++++ +        D+  +     K  +   +
Sbjct: 123 LTKQGYSVGVIGADTYRPGALVQLKTMCEKSNVEVYGEPNNKDSPDIVKNGLKHYENLPL 182

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++IIDTAGR      L++ + ++ +V        P   + V+D T GQ    Q E FH 
Sbjct: 183 DIIIIDTAGRHKEEKDLLSEMEQINKV------SNPDLAILVIDGTIGQQCFNQAEAFHK 236

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
                G+I+TK+D +A+GGG I         + ++G GE I+DLE F    F   + G  
Sbjct: 237 TIPVGGIIITKLDSSAKGGGAIAASAATGAQIMYVGTGERIDDLEKFSPTRFVGRLLGMG 296

Query: 315 D 315
           D
Sbjct: 297 D 297


>gi|303389022|ref|XP_003072744.1| signal recognition particle protein Srp54 [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303301886|gb|ADM11384.1| signal recognition particle protein Srp54 [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 466

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 147/292 (50%), Gaps = 16/292 (5%)

Query: 32  ITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTK----RYAKDVSVQRV 84
           +++++ SR  D  +   ++++   LI S++       +  EL  +      A  ++  RV
Sbjct: 13  LSNLLRSRATDQDIEAAIKEICHSLILSNVNPRYVSNLRNELKARLDPSGMAPGLNKARV 72

Query: 85  LYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           + + V E +  +L P +K +  +   +  +I+ VG+ G GKTT I K +      G KV 
Sbjct: 73  VQNAVYEKLVDLLDPKAKGYKIE-KGKTSIIVFVGLQGSGKTTSICKYANFYKKKGFKVG 131

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           +   DTFR+ A DQ++  A +    F  S   +D   +A    ++ + ++ +V+++DT+G
Sbjct: 132 IVCADTFRAGAFDQVRQNALKIKVPFFGSS-EADPVKVAGAGVERFRRERFEVILVDTSG 190

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R    S L   +  ++R ++      P S++ V+DA  GQ+A  Q   F        +I+
Sbjct: 191 RHTQESELFVEMKDIMREVR------PDSIVFVMDAGIGQSAEDQAIGFKKAVNVGSIIL 244

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TK+DGT + GG I  V     P+ F+G GEG+ DLE F A+ F + + G  D
Sbjct: 245 TKIDGTNKAGGAISSVAATGCPIEFVGNGEGMEDLEVFDARRFVSRMLGMGD 296


>gi|295135662|ref|YP_003586338.1| signal recognition particle protein [Zunongwangia profunda SM-A87]
 gi|294983677|gb|ADF54142.1| signal recognition particle protein [Zunongwangia profunda SM-A87]
          Length = 442

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 109/211 (51%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADR 164
           + S  P VIL+ G+ G GKTT  GKL+  + +   K  +L A D +R AAI+QL +  ++
Sbjct: 94  NLSGDPSVILMSGLQGSGKTTFSGKLANYLKNKKTKKPLLVACDVYRPAAINQLHVVGEQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +    E   D  A++  A   A+    +V+IIDTAGRL  +  +M  I  +   ++ 
Sbjct: 154 LGVEVFSDEGNQDPVAISKAAIAHAKENGHNVVIIDTAGRLAVDEAMMTEISNIHTAIE- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                PH  L V+D+ TGQ+A+   + F+      G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PHETLFVVDSMTGQDAVNTAKAFNDRLDFDGVILTKLDGDTRGGAAISIKSVVNK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE ++ ++ F     +  I G  D
Sbjct: 268 PIKFIGTGEKMDAIDVFYPSRMADRILGMGD 298


>gi|89098672|ref|ZP_01171554.1| Signal recognition particle, subunit Ffh/SRP54 [Bacillus sp. NRRL
           B-14911]
 gi|89086634|gb|EAR65753.1| Signal recognition particle, subunit Ffh/SRP54 [Bacillus sp. NRRL
           B-14911]
          Length = 449

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +        +L A D +R AAI QL+    + +   
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKHNRNPLLVAADIYRPAAIKQLETLGKQINMPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +A +A  +A+    D ++IDTAGRLH +  LM  + K I+ L +     
Sbjct: 161 FSLGDQVSPVEIARQAIAKAKEDHHDYVLIDTAGRLHVDEALMDEL-KQIKELSK----- 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +  V+DA TGQ+A+   + F+   G TG+++TK+DG  RGG  + I      P+ F+
Sbjct: 215 PDEIFLVVDAMTGQDAVNVAQSFNEQLGLTGVVLTKLDGDTRGGAALSIRSVTSTPIKFV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+GE ++ +E F  +  ++ I G  D
Sbjct: 275 GLGEKMDAIEAFHPERMASRILGMGD 300


>gi|86742276|ref|YP_482676.1| signal recognition particle subunit FFH/SRP54 (srp54) [Frankia sp.
           CcI3]
 gi|86569138|gb|ABD12947.1| signal recognition particle subunit FFH/SRP54 (srp54) [Frankia sp.
           CcI3]
          Length = 517

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  V  +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRVALLEADVALPVVRGFVAAVKERARGAEVSASLNPAQQVIKIVNEELVAILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             +    +  +  P VIL+ G+ G GKTT+ GKL + +   G   +L A D  R  A++Q
Sbjct: 88  GGTTTLRYAKTP-PTVILLAGLQGTGKTTLAGKLGRWLKAQGHTPLLVAADLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++   R   +    E G+   D   +A +A   A  +  DV+++DTAGRL  +  +M  
Sbjct: 147 LQVVGARAGVEVFAPEPGNGVGDPVRVARDALAHAHRQVFDVVVVDTAGRLGVDEEMMRQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L VLDA  GQ+A+     F    G +G+++TK+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVLDAMIGQDAVATASAFADGVGFSGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F   GE ++D + F  +  ++ I G  D
Sbjct: 261 ALSVAQVTGRPIMFASTGEALDDFDVFHPERMASRILGMGD 301


>gi|48146167|emb|CAG33306.1| SRPR [Homo sapiens]
          Length = 638

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLWESVANKLEGKVMGTFSTVTSTVKQALQESL 393

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R SA                    G DAA +A EA   A+ + 
Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFN 567

Query: 253 -----HAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+   DL    
Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 627

Query: 303 AK 304
           AK
Sbjct: 628 AK 629


>gi|149238239|ref|XP_001524996.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451593|gb|EDK45849.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 562

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 142/285 (49%), Gaps = 29/285 (10%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP---- 98
           D V ++  + LI  +I    A+ I++++  +   K V++      +++ + K+L P    
Sbjct: 276 DEVSKKFYEQLISKNIAPGTAKAIIDKIKARLSGKKVTMTIFKQALTDELTKILTPNVST 335

Query: 99  -LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            L      + + RP+VI VVGVNGVGK+T + KL+       L V++ A DTFRS A++Q
Sbjct: 336 DLLYEIKRNNTGRPYVISVVGVNGVGKSTNLAKLAYWFLQNNLNVLICACDTFRSGAVEQ 395

Query: 158 LKIWADR----TSADFVCSEI---------GSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           LK+  +      S     S+I         G      A +A + A+A   DV++IDTAGR
Sbjct: 396 LKVHVNNLNQLNSGLSNKSQIDIYEKGYGGGDHVVTTAKQAIEYAKANAFDVVLIDTAGR 455

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG---- 260
            H+N+ LMA + K        D   P+ ++ V +A  G +++ Q   F+   G       
Sbjct: 456 THSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQATNFNQAFGNKRSLDF 509

Query: 261 LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            I++K+D      G +I +V+  K+P+ F+G G+   D++    K
Sbjct: 510 FIVSKVDTVGDLVGTMINMVMATKVPILFVGTGQTYTDIKRLSVK 554


>gi|282859593|ref|ZP_06268697.1| signal recognition particle protein [Prevotella bivia JCVIHMP010]
 gi|282587644|gb|EFB92845.1| signal recognition particle protein [Prevotella bivia JCVIHMP010]
          Length = 453

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 139/280 (49%), Gaps = 15/280 (5%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   + + TK    +V +  +    + +L+H  L  L
Sbjct: 26  NVAETLKDVRRALLDADVNYKVAKSFTDTVKTKALGMNVLTAVKPGQLMVKLVHDELADL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAID 156
              +      + RP +IL+ G+ G GKTT  GKL+  +     K  +L A D +R AAI+
Sbjct: 86  MGGEAVGLKLTSRPAIILMSGLQGSGKTTFTGKLANMLKAKEHKTPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK+  ++ +          +   +A  A  +A+AK  DV+IIDTAGRL  +  +M  I 
Sbjct: 146 QLKVVGEQVNVPVYSEPENKNVNEIATHAIAEAKAKGNDVVIIDTAGRLAIDEDMMNEI- 204

Query: 217 KMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
                 + L  H  P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  
Sbjct: 205 ------ESLKNHVNPDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + I      P+ F+G GE +  ++ F  +  +  I G  D
Sbjct: 259 LSIRTVVTKPIKFIGTGEKMEAIDVFHPERMADRILGMGD 298


>gi|154147877|ref|YP_001406144.1| signal recognition particle protein [Campylobacter hominis ATCC
           BAA-381]
 gi|153803886|gb|ABS50893.1| signal recognition particle protein [Campylobacter hominis ATCC
           BAA-381]
          Length = 444

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 9/217 (4%)

Query: 99  LSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L+ P N  F   S  P V+L+ G+ G GKTT   KL+  +     KV++AA D  R AA+
Sbjct: 79  LTAPGNQGFVFASQNPTVVLMAGLQGSGKTTTTVKLANYLKLRKKKVLIAACDLQRLAAV 138

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+   +    +    E   +   +A EA  +A+    DVL+IDTAGRL  +  LM  +
Sbjct: 139 EQLRQLCEANEIELFYIENEKNPKKVAKEAILKAKKGLYDVLLIDTAGRLAIDEELMDEL 198

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            ++ ++        P  +  V DA +GQ+ +R    F+   G +G+I++K D   +GG  
Sbjct: 199 KEIKKI------SNPDEIFYVADAMSGQDGVRSAANFNEKLGISGVILSKFDADTKGGVA 252

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           + I     IP+ F+G GE I D E F+ +   + I G
Sbjct: 253 LGIAKQLNIPLRFIGTGEKIADFEGFIPERIVSRIMG 289


>gi|295396043|ref|ZP_06806227.1| signal recognition particle protein [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971131|gb|EFG47022.1| signal recognition particle protein [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 552

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 145/294 (49%), Gaps = 21/294 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ + V +     +  +  +
Sbjct: 2   FNSLSDRLTSTFKNLRGKGRLSEADVDATIREIRRALLDADVALPVVRAFTGRVRERALS 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V++ + ++L    K     F+ +P  VI++ G+ G GKTT+ GK
Sbjct: 62  AEVSEALNPGQQVVKIVNDELVQILG--GKTRRIQFAKKPPTVIMLAGLQGAGKTTLAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L+  +   G + ML A D  R  A++QL++   R  A     E G+   D   +A ++ +
Sbjct: 120 LAHWLKSDGHRPMLVAADLQRPNAVNQLEVVGSRAGAYVYAPEPGNGVGDPVKVARDSME 179

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A++K  DV+I+DTAGRL  +  LM     +   +       P  VL V+DA  GQ+A+ 
Sbjct: 180 VAKSKLYDVVIVDTAGRLGIDEELMQQASDIRAAVN------PDEVLFVIDAMIGQDAVT 233

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             + F+     TG++++K+DG +RGG  + +      P+ F   GEG+ D E F
Sbjct: 234 TAQAFNEGVDFTGVVLSKLDGDSRGGAALSVAEVTGKPIMFASTGEGLKDFELF 287


>gi|48477967|ref|YP_023673.1| signal recognition particle protein Srp54 [Picrophilus torridus DSM
           9790]
 gi|48430615|gb|AAT43480.1| signal recognition particle protein Srp54 [Picrophilus torridus DSM
           9790]
          Length = 456

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 106/206 (51%), Gaps = 8/206 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P  I++VG+ G GKTT  GKL++     GL V L A D  R  A +QL+  + + ++ F
Sbjct: 96  KPQTIMLVGLYGNGKTTTAGKLARFFIKKGLSVGLIAADVHRPGAYEQLEQISKQVNSLF 155

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
              +   D   +      +    KV   IIDT+GR   +  L+  I ++   +K      
Sbjct: 156 YGEKNEKDPVKIIKNGLDRLGDAKVK--IIDTSGRDSLDDELIDEIKRIKNEIK------ 207

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  VL V+DAT GQ    Q ++ +     +G+I+TKMDGT +GGG +  V   K PVYF+
Sbjct: 208 PDEVLYVVDATLGQQVGPQAKVLNDAVSISGVIITKMDGTGKGGGALSAVAEIKSPVYFI 267

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE + D E F  + F + + G  D
Sbjct: 268 GTGEHMEDFEVFNPRKFLSRLLGMGD 293


>gi|66819967|ref|XP_643640.1| signal recognition particle 54 kDa subunit [Dictyostelium
           discoideum AX4]
 gi|75009097|sp|Q75K18|SRP54_DICDI RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|60471522|gb|EAL69478.1| signal recognition particle 54 kDa subunit [Dictyostelium
           discoideum AX4]
          Length = 542

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 123/243 (50%), Gaps = 19/243 (7%)

Query: 81  VQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +++V++D  ELI ++L   +PL KP       + ++++ VG+ G GKTT + KL+     
Sbjct: 75  IKQVVFD--ELI-RLLDPGVPLWKPTKG----KSNIVMFVGLQGAGKTTSVTKLAYFYKK 127

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            G    +   DTFR+ A DQ++  A +    +  SE   D   +A       +    +++
Sbjct: 128 KGFSTAIVCADTFRAGAFDQVRHNAAKAKIHYYGSETEKDPVVVARTGVDIFKKDGTEII 187

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           I+DT+GR   +S L   + ++   +K      P + + V+D++ GQ A  Q   F +   
Sbjct: 188 IVDTSGRHKQDSELFEEMKQIETAVK------PDNCIFVMDSSIGQAAYEQATAFRSSVK 241

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
              +I+TKMDG + GGG I  V     P+ F+G GE + DLE F   D S  ++  L YG
Sbjct: 242 VGSIIITKMDGNSMGGGAISAVAATNTPIIFIGTGEHLTDLELF---DPSTFVSKLLGYG 298

Query: 318 EEK 320
           + K
Sbjct: 299 DMK 301


>gi|107021668|ref|YP_619995.1| signal recognition particle protein [Burkholderia cenocepacia AU
           1054]
 gi|116688614|ref|YP_834237.1| signal recognition particle protein [Burkholderia cenocepacia
           HI2424]
 gi|206561770|ref|YP_002232535.1| signal recognition particle protein [Burkholderia cenocepacia
           J2315]
 gi|254246394|ref|ZP_04939715.1| Signal recognition particle protein [Burkholderia cenocepacia
           PC184]
 gi|105891857|gb|ABF75022.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           cenocepacia AU 1054]
 gi|116646703|gb|ABK07344.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           cenocepacia HI2424]
 gi|124871170|gb|EAY62886.1| Signal recognition particle protein [Burkholderia cenocepacia
           PC184]
 gi|198037812|emb|CAR53756.1| signal recognition particle protein [Burkholderia cenocepacia
           J2315]
          Length = 455

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK   ++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVTEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVL++DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSTPDQKPVDIALAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHGTLK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|229586415|ref|YP_002844916.1| Signal recognition particle protein [Rickettsia africae ESF-5]
 gi|228021465|gb|ACP53173.1| Signal recognition particle protein [Rickettsia africae ESF-5]
          Length = 449

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 149/290 (51%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89
           I++  ++D  +R+ +   L+ SD+ + V +  + E+  K   ++V  SV   Q ++  + 
Sbjct: 21  ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P V  L+VG+ G GKTT   KL+ ++ +   KV+L + D
Sbjct: 80  EEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLRNQNKKVLLVSLD 139

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL I A+    + +    G     +   A  +A+    DV+I DTAGR   +
Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQID 199

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M     + ++++      P   L V+D+ TGQ+A+     F+     +GLI++++DG
Sbjct: 200 KAMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            ++GG  + +    K P+ FL  GE + DLE F A+  ++ I   LD G+
Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRI---LDMGD 300


>gi|70951146|ref|XP_744837.1| signal recognition particle receptor alpha subunit, [Plasmodium
           chabaudi chabaudi]
 gi|56524952|emb|CAH76902.1| signal recognition particle receptor alpha subunit, putative
           [Plasmodium chabaudi chabaudi]
          Length = 532

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 113/204 (55%), Gaps = 18/204 (8%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           + + I  +GVNGVGK+T + K+   +   G LK+M+AA DTFR+ AI+QL+I A      
Sbjct: 325 KLYSICFLGVNGVGKSTNLAKVCYYLKSKGNLKIMIAACDTFRAGAIEQLRIHAKCLDVH 384

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                 G +AAA+A +A   A+ +K DV++IDTAGR+ +N  LM  +GK+I +      +
Sbjct: 385 LFEKGYGKNAAAIAKDAISYAKKEKYDVILIDTAGRMQDNEPLMRSLGKLILI------N 438

Query: 229 APHSVLQVLDATTGQNALRQVEMFH-----AVAGTT-----GLIMTKMDGT-ARGGGLIP 277
            P  +L V +A  G +A+ Q++ F+     A   T      G+I+TK D    + G  + 
Sbjct: 439 NPDLILFVGEALVGNDAIDQLKKFNQTLIDATCDTNKRTIDGIILTKFDTVDDKVGTALS 498

Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301
           +V     P+ F+GVG+    L+ F
Sbjct: 499 MVYLTGRPIVFVGVGQKYTHLKKF 522


>gi|120603184|ref|YP_967584.1| signal recognition particle protein [Desulfovibrio vulgaris DP4]
 gi|120563413|gb|ABM29157.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfovibrio vulgaris DP4]
          Length = 508

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 147/307 (47%), Gaps = 22/307 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L +         +LD+  ++E L ++   L+ +D+   V +  ++ +  +   
Sbjct: 2   FDSLSDRLTQAFRKFSGQSQLDENNIQEGLREVRLALLEADVNFKVVKDFIDRVKERCLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVI 128
           +DV       Q+V+    +++H  L+ L      +   R   P VI++VG+ G GKTT  
Sbjct: 62  QDVLKSLTPAQQVV----KVVHDELVELLGGGTTELDLRGAQPGVIMMVGLQGSGKTTSS 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            K++  +    ++  L   D +R AAIDQL   A +    +  S        +   A   
Sbjct: 118 AKIANLLRKRKMRPYLVPVDVYRPAAIDQLVTLARQLDIPYYQSTPDMKPLDIVRAALAD 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+   +++DTAGRLH +  LM  +  +          +P  +L V DA TGQ+A+  
Sbjct: 178 AKEKQCTAVLLDTAGRLHVDEALMDELAALKATF------SPQEILFVADAMTGQDAVTV 231

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+   G TG+++TKMDG ARGG  + I       V ++G+GE ++D+E F     + 
Sbjct: 232 ADAFNEKLGITGVVLTKMDGDARGGAALSIKSVTGASVKYVGIGEKLSDIEVFHPDRVAG 291

Query: 309 VITGCLD 315
            I G  D
Sbjct: 292 RILGMGD 298


>gi|322779356|gb|EFZ09612.1| hypothetical protein SINV_09353 [Solenopsis invicta]
          Length = 654

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 146/295 (49%), Gaps = 41/295 (13%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP- 98
           V E+L+D LI  ++   +AQK+ + + TK   K     D     V   +++ + ++L P 
Sbjct: 358 VLEKLKDHLITKNVAADIAQKLCDSVGTKLEGKILGTFDSVANTVKTTLTDALVQILSPK 417

Query: 99  -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                L        S +P+V+   GVNGVGK+T + K+   + +   +V++AA DTFR+ 
Sbjct: 418 RRIDILRDALEAKKSSKPYVMTFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAG 477

Query: 154 AIDQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           A++QL+                +++         G DAA +A EA + A+  ++DV+++D
Sbjct: 478 AVEQLRTHMRHLNALHPPEKHGNQSMVQLYEKGYGKDAAGIAMEAIRFAKDSRIDVVLVD 537

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259
           TAGR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ A+A  +
Sbjct: 538 TAGRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYS 591

Query: 260 ---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                    G+++TK D    + G  I +      P+ F+G G+   DL+   AK
Sbjct: 592 QSANPHIIDGIVLTKFDTIDDKVGAAITMTYITGQPIVFVGTGQTYTDLKSLNAK 646


>gi|51892603|ref|YP_075294.1| signal recognition particle [Symbiobacterium thermophilum IAM
           14863]
 gi|51856292|dbj|BAD40450.1| signal recognition particle [Symbiobacterium thermophilum IAM
           14863]
          Length = 454

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P +I++ G+ G GKTT   KL+ K+   G K +L A D +R AAI QL++  ++      
Sbjct: 100 PTIIMLCGLQGAGKTTHAAKLALKLKKEGKKPLLVAADVYRPAAIKQLEVLGEQVGVPVY 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                +    +A  A   A  ++ DV+I+DTAGRL  +  LM  + ++   ++      P
Sbjct: 160 SEGDQASPVDIAQHAVAYAAEERRDVIIVDTAGRLTIDEELMEELQQIKARIQ------P 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H  L VLDA  GQ+A+   E FH   G  G+I+TK+DG  RGG  + +      P+ F+G
Sbjct: 214 HDTLLVLDAMIGQDAVTTAEHFHTKLGIDGVILTKLDGDTRGGAALSVREVTGRPIKFVG 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           VGE ++ LEPF     ++ I G  D
Sbjct: 274 VGEKLDALEPFYPDRLASRILGMGD 298


>gi|34580832|ref|ZP_00142312.1| signal recognition particle protein [Rickettsia sibirica 246]
 gi|28262217|gb|EAA25721.1| signal recognition particle protein [Rickettsia sibirica 246]
          Length = 449

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 149/290 (51%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89
           I++  ++D  +R+ +   L+ SD+ + V +  + E+  K   ++V  SV   Q ++  + 
Sbjct: 21  ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P V  L+VG+ G GKTT   KL+ ++ +   KV+L + D
Sbjct: 80  EEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLRNQNKKVLLVSLD 139

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL I A+    + +    G     +   A  +A+    DV+I DTAGR   +
Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQID 199

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M     + ++++      P   L V+D+ TGQ+A+     F+     +GLI++++DG
Sbjct: 200 KAMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            ++GG  + +    K P+ FL  GE + DLE F A+  ++ I   LD G+
Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRI---LDMGD 300


>gi|126327281|ref|XP_001365549.1| PREDICTED: similar to Proteasome (prosome, macropain) 26S subunit,
           non-ATPase, 12 [Monodelphis domestica]
          Length = 634

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 41/302 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 330 SREDMESVLDKMRDHLIAKNVAADIALQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 389

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + +    V++AA
Sbjct: 390 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENNFSVLIAA 449

Query: 147 GDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFR+ A++QL+    R SA                    G DAA +A EA   A+ + 
Sbjct: 450 CDTFRAGAVEQLRTHTRRLSALHPPENHGGRTMVHLFEKGYGKDAAGIAMEAISFARNQA 509

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF- 252
            DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F 
Sbjct: 510 FDVVLVDTAGRMQDNAPLMTALAKLIAV------NTPDLVLFVGEALVGNEAVDQLVKFN 563

Query: 253 -----HAVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                H++A T     G+++TK D    + G  I +      P+ F+G G+  +DL    
Sbjct: 564 KALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYSDLRSLN 623

Query: 303 AK 304
           AK
Sbjct: 624 AK 625


>gi|265751175|ref|ZP_06087238.1| signal recognition particle protein [Bacteroides sp. 3_1_33FAA]
 gi|263238071|gb|EEZ23521.1| signal recognition particle protein [Bacteroides sp. 3_1_33FAA]
          Length = 440

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 109/197 (55%), Gaps = 9/197 (4%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
              RP VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AAI+QL++  ++ 
Sbjct: 95  LESRPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIEQLRVLGEQI 154

Query: 166 SADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
               V SE+ S +   +A  A  +A+AK  D++I+DTAGRL  +  +M  I  + + +  
Sbjct: 155 EVP-VYSELDSKNPVQIALNAIHEAKAKGYDLVIVDTAGRLAIDEQMMNEIEAIKKAIN- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+D+ TGQ+A+     F+      G+++TK+DG  RGG  + I      
Sbjct: 213 -----PDETLFVVDSMTGQDAVNTAREFNERLDFNGVVLTKLDGDTRGGAALSIRTVVNK 267

Query: 285 PVYFLGVGEGINDLEPF 301
           P+ F+G GE ++ ++ F
Sbjct: 268 PIKFVGTGEKLDAIDQF 284


>gi|302542213|ref|ZP_07294555.1| signal recognition particle protein [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459831|gb|EFL22924.1| signal recognition particle protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 521

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 140/281 (49%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++++  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRSFIKQVKERSLGAEVSQALNPAQQVIKIVNEELIGILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL + +   G   +L A D  R  A++Q
Sbjct: 88  GDARRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKGQGHAPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+ K+ DV+I+DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVAVFAPEPGNGVGDPVKVAQDSIEFAKTKQHDVVIVDTAGRLGIDEELMRQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  VL V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEVLFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + I       + F   GE ++D + F     ++ I G  D
Sbjct: 261 ALSIAHVTGRQIMFASNGEKLDDFDAFHPDRMASRILGMGD 301


>gi|15639407|ref|NP_218856.1| signal recognition particle protein (ffh) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025649|ref|YP_001933421.1| signal recognition particle protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|3322699|gb|AAC65403.1| signal recognition particle protein (ffh) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018224|gb|ACD70842.1| signal recognition particle protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059804|gb|ADD72539.1| signal recognition particle protein [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 452

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 103/207 (49%), Gaps = 10/207 (4%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +IL++G+ G GKTT   KL+  + DAG   +LAA D  R+AA  QL +            
Sbjct: 103 IILLLGLQGSGKTTSAAKLAAYLKDAGRSPLLAACDHVRAAASAQLAVLGTHIGVPVYQH 162

Query: 173 EIGSDAAALAYE----AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +  +    A +    A + A++   DVLIIDTAGRLH ++ LM  +  +   L      
Sbjct: 163 ALPHEQQPCALDTARGALQYARSHGNDVLIIDTAGRLHVDAALMQELILLKETL------ 216

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L V DA TGQ  +R  E FHA  G +G++++K D   RGG  + +      P+ F
Sbjct: 217 VPVETLLVADALTGQTVVRIAEEFHAAVGISGVVLSKFDSDTRGGAALSLKSITGQPLLF 276

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE   D EPF  +  +  I G  D
Sbjct: 277 VGTGERPQDFEPFHPERAAGRILGMGD 303


>gi|257055023|ref|YP_003132855.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Saccharomonospora viridis DSM 43017]
 gi|256584895|gb|ACU96028.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Saccharomonospora viridis DSM 43017]
          Length = 515

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 141/281 (50%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V ++ ++ +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 31  DATAREIRIALLEADVALPVVREFIKHVKERAKGAEVSQALNPAQQVIKIVNEELIAILG 90

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++  N   +  P VI++ G+ G GKTT+ GKL++ +   G   +L A D  R  A+ Q
Sbjct: 91  GETRRLNLAKTP-PSVIMLAGLQGSGKTTLAGKLARWLKKQGHTPLLVACDLQRPNAVTQ 149

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        E G+   D   +A+ + ++A+  + DV+I+DTAGRL  +  +M  
Sbjct: 150 LQVVGERAGVTTFAPEPGNGVGDPVDVAHRSIEEARRAQHDVVIVDTAGRLGVDEEMMRQ 209

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P   L V+DA  GQ+A+   E F    G TG+++TK+DG ARGG 
Sbjct: 210 AAD-IR-----DAISPDETLFVVDAMIGQDAVTTAEAFRDGVGFTGVVLTKLDGDARGGA 263

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F   GE + D + F     ++ I G  D
Sbjct: 264 ALSVRHVTGKPILFASNGEKLEDFDVFHPDRMASRILGMGD 304


>gi|219851208|ref|YP_002465640.1| signal recognition particle protein Srp54 [Methanosphaerula
           palustris E1-9c]
 gi|219545467|gb|ACL15917.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 440

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 131/270 (48%), Gaps = 10/270 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNW 105
           ++L+  LI+SD+ V +   + + + T+   ++ +    V   V  ++++ L+ L  P   
Sbjct: 32  KDLQRALIQSDVNVKLVMNLSQAIKTRSLEEEPLKGMGVREHVLRIVYQELVGLMGP-EV 90

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           + +     IL+ G+ G GKTT   KL++     GL+V +  GDTFR  A  Q+     + 
Sbjct: 91  EVTLGQQTILMAGLQGSGKTTTTAKLARYFQRKGLRVAVICGDTFRPGAYQQISTLCQKI 150

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +         +DA  +  +  K     + +VLIIDT GR      L  G+ + I  L  L
Sbjct: 151 NVPCFGDPNETDAVKIVTKGLKSV--GQAEVLIIDTQGR----HALEEGLIQEIVDLNTL 204

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              A H  L V+DA  GQ A  Q   FH      G+I+TKMDGTA+GGG +  V   K  
Sbjct: 205 S-KATHRWL-VIDAALGQQASEQARRFHQAIDIDGVIITKMDGTAKGGGALSAVAETKSG 262

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G GE I DLE F    F + + G  D
Sbjct: 263 IVFIGSGETIEDLERFDPDGFISRLLGMGD 292


>gi|187934489|ref|YP_001885443.1| signal recognition particle protein [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722642|gb|ACD23863.1| signal recognition particle protein [Clostridium botulinum B str.
           Eklund 17B]
          Length = 452

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 131/268 (48%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  +  + +K    +V       Q+V+  V+E +  ++       N+  
Sbjct: 39  LLEADVNYKVVKGFISTVSSKCVGNEVLESLTPGQQVIKIVNEELTNLMGGSESKINYS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S    VI++VG+ G GKTT+ GKL+ ++     K +L A D +R AAI QL+I   +   
Sbjct: 98  SSGTTVIMLVGLQGAGKTTMCGKLALELRKNNKKPLLVACDVYRPAAIKQLEIVGKQIEI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    +   +A       +    +++IIDTAGRLH +  LM  +  +   +     
Sbjct: 158 PVFSMGDKVNPVDIAKAGIAHGKDNGNNIIIIDTAGRLHIDEALMQELQDIKENVN---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   E F+     TG+I+TK+DG  RGG  + I    + P+ 
Sbjct: 214 --PSEILLVVDSMTGQDAVNVAESFNKDLDVTGVILTKLDGDTRGGAALSIRSITEKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++G GE ++D E F     S+ I G  D
Sbjct: 272 YIGTGEKLSDFEVFHPDRMSSRILGMGD 299


>gi|330466283|ref|YP_004404026.1| signal recognition particle protein [Verrucosispora maris
           AB-18-032]
 gi|328809254|gb|AEB43426.1| signal recognition particle protein [Verrucosispora maris
           AB-18-032]
          Length = 515

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+++  V+E +  +L 
Sbjct: 28  DATAREIRLALLEADVALPVVKGFIANVKERARGAEVSQALNPAQQIIKIVNEELVTVLG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              +   +     P VI++ G+ G GKTT+ GKL++ +   G + +L A D  R  A+ Q
Sbjct: 88  GEGRRLQF-AKQPPTVIMLAGLQGSGKTTLAGKLARWLKAQGHQPLLVAADLQRPNAVGQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++   R   +    E G+   D   +A  + + A+    DV+I+DTAGRL  ++ +M  
Sbjct: 147 LQVLGGRAGVEVYAPEPGNGVGDPVQVAKASLEHARRAARDVVIVDTAGRLGIDAEMMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D   P  V+ V+DA  GQ+A+R  E F    G TG++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVDPDEVIFVIDAMVGQDAVRTAEAFRDGVGITGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F   GE + D + F     ++ I G  D
Sbjct: 261 ALSVREVTGQPILFASTGEKLEDFDVFHPDRMASRILGMGD 301


>gi|154483576|ref|ZP_02026024.1| hypothetical protein EUBVEN_01280 [Eubacterium ventriosum ATCC
           27560]
 gi|149735486|gb|EDM51372.1| hypothetical protein EUBVEN_01280 [Eubacterium ventriosum ATCC
           27560]
          Length = 452

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 112/203 (55%), Gaps = 6/203 (2%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VI+++G+ G GKTT   K++ K+   G + +L A D +R AAI+QLKI  ++        
Sbjct: 106 VIMMMGLQGAGKTTTTAKIAGKLKAKGKRPLLVACDVYRPAAIEQLKINGEKQQVPVFSM 165

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                   +A  A + A+    +V+I+DTAGRLH +  +M    +++ +  R +     +
Sbjct: 166 GDKQKPLNIAKAAIEHAKKNNNNVVILDTAGRLHVDEDMM---NELVEI--RDNIELTQT 220

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL V+DA TGQ+A+   + F+   G  G+I+TK+DG  RGG  + I      P+ ++G+G
Sbjct: 221 VL-VVDAMTGQDAVNVAKEFNEKIGIDGIIVTKLDGDTRGGAALSIKAITGKPILYIGMG 279

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E ++DLE F     ++ I G  D
Sbjct: 280 EKLSDLEQFHPDRMASRILGMGD 302


>gi|15892137|ref|NP_359851.1| signal recognition particle protein [Rickettsia conorii str. Malish
           7]
 gi|28380155|sp|Q92J55|SRP54_RICCN RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|15619266|gb|AAL02752.1| signal recognition particle protein [Rickettsia conorii str. Malish
           7]
          Length = 449

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 149/290 (51%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89
           I++  ++D  +R+ +   L+ SD+ + V +  + E+  K   ++V  SV   Q ++  + 
Sbjct: 21  ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P V  L+VG+ G GKTT   KL+ ++ +   KV+L + D
Sbjct: 80  EEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLRNQNKKVLLVSLD 139

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL I A+    + +    G     +   A  +A+    DV+I DTAGR   +
Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQID 199

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M     + ++++      P   L V+D+ TGQ+A+     F+     +GLI++++DG
Sbjct: 200 KAMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            ++GG  + +    K P+ FL  GE + DLE F A+  ++ I   LD G+
Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRI---LDMGD 300


>gi|294664958|ref|ZP_06730270.1| signal recognition particle protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605265|gb|EFF48604.1| signal recognition particle protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 458

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 22/275 (8%)

Query: 39  RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q ++  V +
Sbjct: 21  RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   +   N +    P ++L+ G+ G GKTT +GKL+K + +   K VM+ + D 
Sbjct: 81  ELTAVMGAAATDLNLNVLA-PAIVLMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADI 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A++    F  S+       +   A   A+   VDVL++DTAGRL  ++
Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDA 199

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +M  I  +         HA   P   L V+DA TGQ+A    + F      TG+++TK 
Sbjct: 200 AMMDEIKTL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           DG ARGG  + +      P+ F+G GE  + L+ F
Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 285


>gi|171920360|ref|ZP_02931692.1| signal recognition particle protein [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|186701891|ref|ZP_02971545.1| signal recognition particle protein [Ureaplasma parvum serovar 6
           str. ATCC 27818]
 gi|171902787|gb|EDT49076.1| signal recognition particle protein [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|186701199|gb|EDU19481.1| signal recognition particle protein [Ureaplasma parvum serovar 6
           str. ATCC 27818]
          Length = 448

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 26/284 (9%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV--------------LYDVSELI 92
           E++++LL  S+I +A+    V  L+ K++ K++  + V              L  + + +
Sbjct: 26  EDIKELL--SEIRIALLDADVNLLVVKKFIKNIKEKTVGLYVEANQKPADLVLKIIKDEL 83

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFR 151
            ++L   +KP N   S     I++VG+ G GKTT  GKL+    +    K +L A D +R
Sbjct: 84  VEILGKENKPVNTAKSQLK--IMMVGLQGSGKTTTTGKLANYFKNKYNKKPLLVAADIYR 141

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            AAIDQL+  A +   DF   E       +   A  +A   + +++I+DTAGRL  N  L
Sbjct: 142 PAAIDQLRTLAKQVRVDF-WEEGTQRPDLIVKNALNKADENENNLIIVDTAGRLQTNEEL 200

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M    +++ V K L+P     V  V+DA  GQ+ +     F+     TG+I+TK+D  AR
Sbjct: 201 MQ---ELVNVKKTLNPD---EVFLVVDAMAGQDIINVATEFNNWLKLTGIIVTKLDSDAR 254

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G ++ +     IP+ F G GE I  ++ F  +  +  I G  D
Sbjct: 255 AGAVLSLTSLLNIPIKFTGTGEKIGSIDSFYPERMADRILGLGD 298


>gi|167586054|ref|ZP_02378442.1| signal recognition particle protein [Burkholderia ubonensis Bu]
          Length = 455

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTAGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSTPDQKPVDIALAAVDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHATLK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEIFHPDRMANRILGMGD 303


>gi|170731913|ref|YP_001763860.1| signal recognition particle protein [Burkholderia cenocepacia
           MC0-3]
 gi|169815155|gb|ACA89738.1| signal recognition particle protein [Burkholderia cenocepacia
           MC0-3]
          Length = 455

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK   ++  ADF
Sbjct: 104 PAVILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVTEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVL++DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSTPDQKPVDIALAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHGTLK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PAETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|160892788|ref|ZP_02073578.1| hypothetical protein CLOL250_00319 [Clostridium sp. L2-50]
 gi|156865829|gb|EDO59260.1| hypothetical protein CLOL250_00319 [Clostridium sp. L2-50]
          Length = 448

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 149/304 (49%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     + S   L +D V+E ++++   L+ +D+   V +  ++ +  +   
Sbjct: 3   FDSLSDKLQNVFKKLRSKGVLTEDDVKEAMKEVKRALLEADVNFKVVKSFIKAVSDRAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V         V+  V E + K++           S+   VI++ G+ G GKTT   KL
Sbjct: 63  EEVLKGLNPGHMVIKIVKEEMDKLMGSDVTELKLLPSNEITVIMMCGLQGAGKTTTAAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +  + G K +L A D +R AAI QL+I  ++                +A  A   A+ 
Sbjct: 123 AYQFKNKGKKPLLVACDVYRPAAIKQLQINGEKVGVPVFTMGDNHKPLDIAKAAILHAEK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             ++++ IDTAGRLH +  +M  + ++     + + +  ++VL V DA TGQ+A+     
Sbjct: 183 NHMNLVFIDTAGRLHVDEDMMDELAEI-----KENINVTYTVLTV-DAMTGQDAVNVATT 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + I      P+ + G+GE + DLEPF     ++ I 
Sbjct: 237 FNDKIGIDGVILTKLDGDTRGGAALSIKAVTGKPILYAGMGEKLTDLEPFYPSRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|255524258|ref|ZP_05391217.1| signal recognition particle protein [Clostridium carboxidivorans
           P7]
 gi|296185380|ref|ZP_06853790.1| signal recognition particle protein [Clostridium carboxidivorans
           P7]
 gi|255512083|gb|EET88364.1| signal recognition particle protein [Clostridium carboxidivorans
           P7]
 gi|296050214|gb|EFG89638.1| signal recognition particle protein [Clostridium carboxidivorans
           P7]
          Length = 454

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 153/305 (50%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F   + KL+E +  +     +S + + D +RE ++  L+ +D+   V +  ++++  K  
Sbjct: 3   FEGLASKLQETLKKLRGKGKLSEKDIKDAMRE-VKLALLEADVNYKVVKDFIKKVSEKCL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V++ +  ++        +  S    +I++VG+ G GKTT+ GK
Sbjct: 62  GEEVLKSLTPAQQVVKIVNDELSNLMGSTESGVQFS-SSGLTMIMLVGLQGAGKTTMAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +      K +LAA D +R AAI QL++   +                ++  A + A+
Sbjct: 121 LALQFRKKNKKPLLAACDIYRPAAIKQLQVVGKQIDVPVFAMGDKVSPVDISKGAIEYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++V+IIDTAGRLH +  LM  +  +   +K      P  +L V+DA TGQ+A+    
Sbjct: 181 NNGLNVVIIDTAGRLHIDEELMNELKDVKENVK------PDEILLVVDAMTGQDAVNVAN 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG  RGG  + I      P+ F+G+GE ++D E F     ++ I
Sbjct: 235 SFNDQLDISGVILTKLDGDTRGGAALSIKAMTDKPIKFVGLGEKMSDFEVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|163850093|ref|YP_001638136.1| signal recognition particle protein [Methylobacterium extorquens
           PA1]
 gi|163661698|gb|ABY29065.1| signal recognition particle protein [Methylobacterium extorquens
           PA1]
          Length = 520

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  IL+VG+ G GKTT   K++++++     +V+LA+ DT R AA++QL + A +   + 
Sbjct: 100 PVAILMVGLQGSGKTTTTAKIARRLNQRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVES 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G  A  +A  A + A+    DV+++DTAGR   +  LM    ++    K      
Sbjct: 160 LPIVAGQSAVQIAKRAMETARLGGFDVVMLDTAGRTTVDEGLMNEAAEVKAATK------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V DA TGQ+A+     F    G TG+++T+MDG +RGG  + +      P+  +
Sbjct: 214 PHEVLLVADALTGQDAVNTARAFDERLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLV 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE ++ LE F  +  +  I G  D
Sbjct: 274 GVGEKVDALEEFHPQRVANRILGMGD 299


>gi|163757330|ref|ZP_02164419.1| hypothetical protein HPDFL43_18007 [Hoeflea phototrophica DFL-43]
 gi|162284832|gb|EDQ35114.1| hypothetical protein HPDFL43_18007 [Hoeflea phototrophica DFL-43]
          Length = 542

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT   K++ ++     K V++A+ DT R AA +QL+   ++T    
Sbjct: 113 PVVIMMVGLQGSGKTTTSAKIAARLEKRDRKKVLMASLDTRRPAAQEQLRQLGEQTGVAT 172

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LMA   +M  + +R +PH 
Sbjct: 173 LPIIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMA---EMAEIKRRANPH- 228

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              +L V DA TGQ+A+     F    G +GL++T+MDG  RGG  + +      P+  +
Sbjct: 229 --EILLVADALTGQDAVNLARNFDERVGISGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 286

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE ++ LE F  +  +  I G  D
Sbjct: 287 GTGEKMDALEEFHPRRVADRILGMGD 312


>gi|213964418|ref|ZP_03392618.1| signal recognition particle protein [Corynebacterium amycolatum
           SK46]
 gi|213952611|gb|EEB63993.1| signal recognition particle protein [Corynebacterium amycolatum
           SK46]
          Length = 537

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 19/218 (8%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS---- 166
           P VI++ G+ G GKTT+ GKL++ ++D G   +L A D  R  A+ QL+I A+R      
Sbjct: 100 PTVIMLAGLQGAGKTTLAGKLARYLTDQGHTPVLVACDLQRPGAVQQLEIVAERAGVPCF 159

Query: 167 ADFVCSEIGS---------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           A F  + + S         +    A+     A+  + DV+IIDTAGRL  + +LM    K
Sbjct: 160 APFPGTSLDSTHEMGTSEDNPVDAAFRGLAYARQHRHDVVIIDTAGRLGIDEVLM----K 215

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
             R ++  D   PH VL V+D+  GQ+A+   + F      TG+++TK+DG ARGG  + 
Sbjct: 216 QARDIR--DAINPHEVLFVIDSMIGQDAVETAKAFRDGVDFTGVVLTKLDGDARGGAALS 273

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I      P+ F   GE + D + F     ++ I G  D
Sbjct: 274 IREVTGKPILFASTGEKLEDFDVFHPDRMASRILGMGD 311


>gi|326335869|ref|ZP_08202048.1| signal recognition particle protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692013|gb|EGD33973.1| signal recognition particle protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 448

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           + S  P VIL+ G+ G GKTT  GKL+  + +    K +L A D +R AAIDQL I  ++
Sbjct: 94  NLSGNPSVILMSGLQGSGKTTFSGKLANFLKTKKNKKPLLVACDVYRPAAIDQLHIVGEQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                      ++   +A +  + A++   +V+IIDTAGRL  +  +M  I ++ + +  
Sbjct: 154 IGVPVFSERGNNNPVDIAQKGLQYAKSNGFNVVIIDTAGRLAADEQMMKEIAEIHKAVN- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+DA TGQ+A+   + F+ V    G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDAMTGQDAVNTAKAFNDVLDFDGVILTKLDGDTRGGAAISIKSVVNK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE ++ ++ F     +  I G  D
Sbjct: 268 PIKFVGTGEKMDAIDVFYPDRMADRILGMGD 298


>gi|83719534|ref|YP_441696.1| signal recognition particle protein [Burkholderia thailandensis
           E264]
 gi|167580506|ref|ZP_02373380.1| signal recognition particle protein [Burkholderia thailandensis
           TXDOH]
 gi|167618615|ref|ZP_02387246.1| signal recognition particle protein [Burkholderia thailandensis
           Bt4]
 gi|257137865|ref|ZP_05586127.1| signal recognition particle protein [Burkholderia thailandensis
           E264]
 gi|83653359|gb|ABC37422.1| signal recognition particle protein [Burkholderia thailandensis
           E264]
          Length = 455

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVL++DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSTPDQKPVDIANAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHAALK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PVETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|296129315|ref|YP_003636565.1| signal recognition particle protein [Cellulomonas flavigena DSM
           20109]
 gi|296021130|gb|ADG74366.1| signal recognition particle protein [Cellulomonas flavigena DSM
           20109]
          Length = 536

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 155/319 (48%), Gaps = 32/319 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L     ++ +  RL     D    E+   L+ +D+ V V ++    +  +  +
Sbjct: 2   FATLSDRLTSTFKNLRTKGRLSEADIDATIREIRRALLDADVAVTVVRQFTGAVRERALS 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKVVNEELVAILGGQTRTLAF-AKQPPTVVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------------ADFVCSEIGSDAA 179
           +  + + G   +L A D  R  A+ QL++  +R              AD V    G+D  
Sbjct: 121 ALWLREQGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPHPGNQGADDVLP-AGADPV 179

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A    + A+ K+ DV+++DTAGRL  ++ LMA     IR     D   P  VL V+DA
Sbjct: 180 AVARAGVETARQKQHDVVVVDTAGRLGVDAELMAQASD-IR-----DAVQPDEVLFVVDA 233

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             GQ+A+   + F    G TG++++K+DG ARGG  + I      P+ +   GE + D E
Sbjct: 234 MIGQDAVTTAQAFADGVGFTGVVLSKLDGDARGGAALSIASVTGRPIMYASTGEKLTDFE 293

Query: 300 PFVAKDFSAVITGCLDYGE 318
            F     ++ I   LD G+
Sbjct: 294 VFHPDRMASRI---LDMGD 309


>gi|294500961|ref|YP_003564661.1| signal recognition particle protein [Bacillus megaterium QM B1551]
 gi|295706307|ref|YP_003599382.1| signal recognition particle protein [Bacillus megaterium DSM 319]
 gi|294350898|gb|ADE71227.1| signal recognition particle protein [Bacillus megaterium QM B1551]
 gi|294803966|gb|ADF41032.1| signal recognition particle protein [Bacillus megaterium DSM 319]
          Length = 447

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +        +L A D +R AAI QL+    + S   
Sbjct: 101 PTVIMMVGLQGAGKTTTTGKLANLLRKKYNRNPLLVAADIYRPAAIKQLETLGKQLSMSV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +A +A   A+ +  D ++IDTAGRLH +  LM  + + I+ L       
Sbjct: 161 FSLGDQVSPVEIAKQAIAHAKEEHHDYVLIDTAGRLHVDENLMEEL-EQIKELSN----- 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +  V+DA TGQ+A+   + F+   G TG+++TK+DG  RGG  + I      P+ F+
Sbjct: 215 PDEIFLVVDAMTGQDAVNVADSFNKQLGLTGVVLTKLDGDTRGGAALSIRAVTDTPIKFV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+GE ++ +E F  +  ++ I G  D
Sbjct: 275 GLGEKMDAIEAFHPERMASRILGMGD 300


>gi|302381703|ref|YP_003817526.1| signal recognition particle protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192331|gb|ADK99902.1| signal recognition particle protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 518

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 113/215 (52%), Gaps = 8/215 (3%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKI 160
           P N + +  P V+L+ G+ G GKTT   KL+ +++    K VM+A+ DT R AA++QL  
Sbjct: 93  PLNLNATP-PAVLLMAGLQGSGKTTTSAKLALRLTKFDRKKVMMASLDTRRPAAMEQLAQ 151

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
              +     +    G  A  +   A   A+ +  DVLI+DTAGR+  +  LM  + ++  
Sbjct: 152 LGKQIEVAVLPIVAGESAVQITRRALTSAKLQGFDVLILDTAGRITLDEGLMNEVAEVAA 211

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           +        P   + V D+ TGQ+A+R  + FH     TGLI+T+ DG  RGG ++ +  
Sbjct: 212 I------ATPVETILVADSLTGQDAVRTAKAFHERLPLTGLILTRADGDGRGGAMLSMRA 265

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              +P+ ++G GE ++ LE F A+  +  I G  D
Sbjct: 266 VTGLPIKYMGSGEKVDALEVFDARRVAGRILGQGD 300


>gi|218132452|ref|ZP_03461256.1| hypothetical protein BACPEC_00311 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992562|gb|EEC58564.1| hypothetical protein BACPEC_00311 [Bacteroides pectinophilus ATCC
           43243]
          Length = 452

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 150/304 (49%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++    RL +  V+  L ++   L+ +D+   V ++ V+ +  +   
Sbjct: 3   FDSLSDKLQNIFKNLRGKGRLSESDVKAALREVKMALLEADVNFKVVKQFVKSVEERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +            VI++ G+ G GKTT   KL
Sbjct: 63  QDVMESLTPGQMVIKIVNEEMIKLMGSETTEIALKSGSEITVIMMAGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G K +L A D +R AA++QLKI  ++            +   +A    + A++
Sbjct: 123 AGKFKAQGRKPLLVACDVYRPAAVEQLKINGEKQGVPVFAMGTNQNPVDIAKAGIEHAKS 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DTAGRLH +  +M  + + I+    +D     ++L V+D+ TGQ+A+     
Sbjct: 183 NGNNIVILDTAGRLHVDEDMMTEL-QNIKSSVGVD----QTIL-VVDSMTGQDAVNVASS 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+I+TK+DG  RGG  + I      P+ + G+GE ++DLE F     ++ I 
Sbjct: 237 FDEKIGIDGVILTKLDGDTRGGAALSIKAVTGKPILYAGMGEKLSDLEQFHPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|218528696|ref|YP_002419512.1| signal recognition particle protein [Methylobacterium
           chloromethanicum CM4]
 gi|218520999|gb|ACK81584.1| signal recognition particle protein [Methylobacterium
           chloromethanicum CM4]
          Length = 520

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  IL+VG+ G GKTT   K++++++     +V+LA+ DT R AA++QL + A +   + 
Sbjct: 100 PVAILMVGLQGSGKTTTTAKIARRLNQRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVES 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G  A  +A  A + A+    DV+++DTAGR   +  LM    ++    K      
Sbjct: 160 LPIVAGQSAVQIAKRAMEAARLGGFDVVMLDTAGRTTVDEGLMNEAAEVKAATK------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V DA TGQ+A+     F    G TG+++T+MDG +RGG  + +      P+  +
Sbjct: 214 PHEVLLVADALTGQDAVNTARAFDERLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLV 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE ++ LE F  +  +  I G  D
Sbjct: 274 GVGEKVDALEEFHPQRVANRILGMGD 299


>gi|76811591|ref|YP_334886.1| signal recognition particle protein [Burkholderia pseudomallei
           1710b]
 gi|134280471|ref|ZP_01767182.1| signal recognition particle protein [Burkholderia pseudomallei 305]
 gi|167740273|ref|ZP_02413047.1| signal recognition particle protein [Burkholderia pseudomallei 14]
 gi|167817493|ref|ZP_02449173.1| signal recognition particle protein [Burkholderia pseudomallei 91]
 gi|167825895|ref|ZP_02457366.1| signal recognition particle protein [Burkholderia pseudomallei 9]
 gi|167895968|ref|ZP_02483370.1| signal recognition particle protein [Burkholderia pseudomallei
           7894]
 gi|167912613|ref|ZP_02499704.1| signal recognition particle protein [Burkholderia pseudomallei 112]
 gi|167920560|ref|ZP_02507651.1| signal recognition particle protein [Burkholderia pseudomallei
           BCC215]
 gi|217421079|ref|ZP_03452584.1| signal recognition particle protein [Burkholderia pseudomallei 576]
 gi|226196827|ref|ZP_03792406.1| signal recognition particle protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|254180580|ref|ZP_04887178.1| signal recognition particle protein [Burkholderia pseudomallei
           1655]
 gi|254190983|ref|ZP_04897489.1| signal recognition particle protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199068|ref|ZP_04905483.1| signal recognition particle protein [Burkholderia pseudomallei S13]
 gi|254260222|ref|ZP_04951276.1| signal recognition particle protein [Burkholderia pseudomallei
           1710a]
 gi|254299333|ref|ZP_04966783.1| signal recognition particle protein [Burkholderia pseudomallei
           406e]
 gi|76581044|gb|ABA50519.1| signal recognition particle protein [Burkholderia pseudomallei
           1710b]
 gi|134248478|gb|EBA48561.1| signal recognition particle protein [Burkholderia pseudomallei 305]
 gi|157809273|gb|EDO86443.1| signal recognition particle protein [Burkholderia pseudomallei
           406e]
 gi|157938657|gb|EDO94327.1| signal recognition particle protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169656898|gb|EDS88295.1| signal recognition particle protein [Burkholderia pseudomallei S13]
 gi|184211119|gb|EDU08162.1| signal recognition particle protein [Burkholderia pseudomallei
           1655]
 gi|217396491|gb|EEC36508.1| signal recognition particle protein [Burkholderia pseudomallei 576]
 gi|225931087|gb|EEH27095.1| signal recognition particle protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|254218911|gb|EET08295.1| signal recognition particle protein [Burkholderia pseudomallei
           1710a]
          Length = 455

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVL++DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSTPDQKPVDIANAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHTALK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PVETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEIFHPDRMANRILGMGD 303


>gi|88658536|ref|YP_507291.1| signal recognition particle protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88599993|gb|ABD45462.1| signal recognition particle protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 448

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 147/272 (54%), Gaps = 14/272 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDV-SVQRVLYDVS 89
           +ISS   D    EE++  L+ +D+ +AV +  +    E+++     K V   Q ++  + 
Sbjct: 21  VISSEDFD-AAMEEVKVALLEADVSLAVVKDFISNVKEKIVGGTTVKGVLPTQMIIKKIQ 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           + + ++L   S+    D S    VI++VG+ GVGKTT   KL+ K+ +   +V++A+ D 
Sbjct: 80  DCLIEVLG--SEKCELDISKPLSVIMMVGLQGVGKTTTTAKLALKLKNKKKEVVMASLDV 137

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AA  QL+I   +     +          +   A   AQ    DVLI+DTAGRLH + 
Sbjct: 138 YRPAAQKQLEILGKQIDVQTLPIIENQAPIDIVKRAMDNAQQANCDVLILDTAGRLHVDQ 197

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
           ++M    + +R +K  D  +P  V+ V+D+  GQ+A+   + F+   G TG+I+T++DG 
Sbjct: 198 VMM----EELRAIK--DLTSPSEVILVVDSMIGQDAINVAKSFNDNIGITGIILTRIDGD 251

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +RGG  + + ++   P+ F+  GE ++DL+ F
Sbjct: 252 SRGGAALSMKMSVGSPIKFIANGEKLSDLDDF 283


>gi|288922435|ref|ZP_06416623.1| signal recognition particle protein [Frankia sp. EUN1f]
 gi|288346238|gb|EFC80579.1| signal recognition particle protein [Frankia sp. EUN1f]
          Length = 526

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 147/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +  T +    RL D        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FDTLSSRLDKVFTSLRGRGRLTDADIDATAREIRVALLEADVALPVVRGFVAAVKERARG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   +    +  +  P VIL+ G+ G GKTT+ GKL
Sbjct: 62  AEVSASLNPAQQVIKIVNEELVAILGGGTTTVRFAKTP-PTVILLAGLQGTGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G   +L A D  R  A++QL++   R   +    E G+   D   +A +A   
Sbjct: 121 GRWLKAQGHTPLLVAADLQRPNAVNQLQVVGGRAGVEVFAPEPGNGVGDPVRVARDALAH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGRL  +  +M      IR     D  +P  +L VLDA  GQ+A+  
Sbjct: 181 ARRHVFDVVVVDTAGRLGVDEEMMRQAAD-IR-----DAVSPDEILFVLDAMIGQDAVST 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G +G+++TK+DG ARGG  + +      P+ F   GE + D + F  +  ++
Sbjct: 235 AQAFADGVGFSGVVLTKLDGDARGGAALSVARVTGAPIMFASTGESLEDFDVFHPERMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|212275688|ref|NP_001130574.1| signal recognition particle receptor homolog1 [Zea mays]
 gi|194689526|gb|ACF78847.1| unknown [Zea mays]
 gi|194707804|gb|ACF87986.1| unknown [Zea mays]
          Length = 625

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 28/278 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104
           L+D L+  ++   +A+K+ E +      K + S  R+   V   +   L+ +  P     
Sbjct: 346 LKDRLMAKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQTAMEDALLRILTPRRSID 405

Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                       RP+VI+ VGVNGVGK+T + K++  +    L V LAA DTFRS A++Q
Sbjct: 406 ILRDVHAAKERGRPYVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVTLAACDTFRSGAVEQ 465

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A R            D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K
Sbjct: 466 LRTHARRLQIPIFEKGYEKDPAVVAREAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSK 525

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-------AVAGT---TGLIMTKMD 267
           +I +      ++P  VL V +A  G +A+ Q+  F+       AV       G+++TK D
Sbjct: 526 LINL------NSPDLVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTARLIDGILLTKFD 579

Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               + G  + +V     PV F+G G+   DL+    K
Sbjct: 580 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 617


>gi|188588867|ref|YP_001920590.1| signal recognition particle protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251780688|ref|ZP_04823608.1| signal recognition particle protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188499148|gb|ACD52284.1| signal recognition particle protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243085003|gb|EES50893.1| signal recognition particle protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 452

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 131/268 (48%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  +  + +K    +V       Q+V+  V+E +  ++       N+  
Sbjct: 39  LLEADVNYKVVKGFISTVSSKCVGNEVLESLTPGQQVIKIVNEELTNLMGGSESKINYS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S    VI++VG+ G GKTT+ GKL+ ++     K +L A D +R AAI QL+I   +   
Sbjct: 98  SSGTTVIMLVGLQGAGKTTMCGKLALELRKNNKKPLLVACDVYRPAAIKQLEIVGKQIEI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    +   +A       +    +++IIDTAGRLH +  LM  +  +   +     
Sbjct: 158 PVFSMGDKVNPVDIAKAGIAHGKDNGNNIIIIDTAGRLHIDEALMQELQDIKENVN---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   E F+     TG+I+TK+DG  RGG  + I    + P+ 
Sbjct: 214 --PSEILLVVDSMTGQDAVNVAESFNNDLDVTGVILTKLDGDTRGGAALSIRNITEKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++G GE ++D E F     S+ I G  D
Sbjct: 272 YIGTGEKLSDFEVFHPDRMSSRILGMGD 299


>gi|241895650|ref|ZP_04782946.1| signal recognition particle protein Ffh [Weissella
           paramesenteroides ATCC 33313]
 gi|241871228|gb|EER74979.1| signal recognition particle protein Ffh [Weissella
           paramesenteroides ATCC 33313]
          Length = 485

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 148/306 (48%), Gaps = 29/306 (9%)

Query: 30  EGITDIISS-----RR----LDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77
           EG+TD +       RR     D  +RE + ++   L+ +D+   V +  V  +  K    
Sbjct: 4   EGLTDRLQKALSGLRRKGKVTDADIRETMREIRLALLEADVNFKVVKDFVRNVREKASGA 63

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            V       Q+++  V++ +  M+   +   N      P VI++VG+ G GKTT  GKL+
Sbjct: 64  KVLEGLNPAQQIVSIVNDELTAMMGESAVALNKS-PKIPTVIMMVGLQGAGKTTTAGKLA 122

Query: 133 KKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQA 189
            K+ ++   + ++ A D +R AAI+QLK   ++   D    ++G+D     +     ++A
Sbjct: 123 LKLKNEQNARPLMIAADVYRPAAIEQLKTLGEQI--DVPVFDMGTDVNPREIVKAGMEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D + ID AGRL  +  LM  +  +       D   P  ++ V+DA TGQNA+   
Sbjct: 181 AELKSDYVFIDAAGRLQIDEELMQELADV------KDIAHPDEIMLVVDAMTGQNAVETA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 235 EGFNDRLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMTDLDIFYPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|53720604|ref|YP_109590.1| signal recognition particle protein [Burkholderia pseudomallei
           K96243]
 gi|53726090|ref|YP_104060.1| signal recognition particle protein [Burkholderia mallei ATCC
           23344]
 gi|67643598|ref|ZP_00442343.1| signal recognition particle protein [Burkholderia mallei GB8 horse
           4]
 gi|121599191|ref|YP_991786.1| signal recognition particle protein [Burkholderia mallei SAVP1]
 gi|124385462|ref|YP_001027279.1| signal recognition particle protein [Burkholderia mallei NCTC
           10229]
 gi|126441162|ref|YP_001060490.1| signal recognition particle protein [Burkholderia pseudomallei 668]
 gi|126448256|ref|YP_001082784.1| signal recognition particle protein [Burkholderia mallei NCTC
           10247]
 gi|126451954|ref|YP_001067754.1| signal recognition particle protein [Burkholderia pseudomallei
           1106a]
 gi|166998599|ref|ZP_02264457.1| signal recognition particle protein [Burkholderia mallei PRL-20]
 gi|167721305|ref|ZP_02404541.1| signal recognition particle protein [Burkholderia pseudomallei
           DM98]
 gi|167847381|ref|ZP_02472889.1| signal recognition particle protein [Burkholderia pseudomallei
           B7210]
 gi|167904353|ref|ZP_02491558.1| signal recognition particle protein [Burkholderia pseudomallei NCTC
           13177]
 gi|242317275|ref|ZP_04816291.1| signal recognition particle protein [Burkholderia pseudomallei
           1106b]
 gi|254178959|ref|ZP_04885613.1| signal recognition particle protein [Burkholderia mallei ATCC
           10399]
 gi|254202780|ref|ZP_04909143.1| signal recognition particle protein [Burkholderia mallei FMH]
 gi|254208122|ref|ZP_04914472.1| signal recognition particle protein [Burkholderia mallei JHU]
 gi|52211018|emb|CAH37006.1| signal recognition particle protein [Burkholderia pseudomallei
           K96243]
 gi|52429513|gb|AAU50106.1| signal recognition particle protein [Burkholderia mallei ATCC
           23344]
 gi|121228001|gb|ABM50519.1| signal recognition particle protein [Burkholderia mallei SAVP1]
 gi|124293482|gb|ABN02751.1| signal recognition particle protein [Burkholderia mallei NCTC
           10229]
 gi|126220655|gb|ABN84161.1| signal recognition particle protein [Burkholderia pseudomallei 668]
 gi|126225596|gb|ABN89136.1| signal recognition particle protein [Burkholderia pseudomallei
           1106a]
 gi|126241126|gb|ABO04219.1| signal recognition particle protein [Burkholderia mallei NCTC
           10247]
 gi|147747027|gb|EDK54104.1| signal recognition particle protein [Burkholderia mallei FMH]
 gi|147752016|gb|EDK59083.1| signal recognition particle protein [Burkholderia mallei JHU]
 gi|160694873|gb|EDP84881.1| signal recognition particle protein [Burkholderia mallei ATCC
           10399]
 gi|238524971|gb|EEP88401.1| signal recognition particle protein [Burkholderia mallei GB8 horse
           4]
 gi|242140514|gb|EES26916.1| signal recognition particle protein [Burkholderia pseudomallei
           1106b]
 gi|243065282|gb|EES47468.1| signal recognition particle protein [Burkholderia mallei PRL-20]
          Length = 455

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVL++DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSTPDQKPVDIANAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHAALK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PVETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEIFHPDRMANRILGMGD 303


>gi|212693973|ref|ZP_03302101.1| hypothetical protein BACDOR_03497 [Bacteroides dorei DSM 17855]
 gi|237710361|ref|ZP_04540842.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237723897|ref|ZP_04554378.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212663505|gb|EEB24079.1| hypothetical protein BACDOR_03497 [Bacteroides dorei DSM 17855]
 gi|229437723|gb|EEO47800.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229455823|gb|EEO61544.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 440

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 109/194 (56%), Gaps = 9/194 (4%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           RP VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AAI+QL++  ++    
Sbjct: 98  RPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIEQLRVLGEQIEVP 157

Query: 169 FVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
            V SE+ S +   +A  A  +A+AK  D++I+DTAGRL  +  +M  I  + + +     
Sbjct: 158 -VYSELDSKNPVQIALNAIHEAKAKGYDLVIVDTAGRLAIDEQMMNEIEAIKKAIN---- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P   L V+D+ TGQ+A+     F+      G+++TK+DG  RGG  + I      P+ 
Sbjct: 213 --PDETLFVVDSMTGQDAVNTAREFNERLDFNGVVLTKLDGDTRGGAALSIRTVVNKPIK 270

Query: 288 FLGVGEGINDLEPF 301
           F+G GE ++ ++ F
Sbjct: 271 FVGTGEKLDAIDQF 284


>gi|314923933|gb|EFS87764.1| signal recognition particle protein [Propionibacterium acnes
           HL001PA1]
          Length = 528

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 144/285 (50%), Gaps = 20/285 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    ++   L+ +D+ ++V ++ V  +  + + +++S      Q+++  V+E + ++L 
Sbjct: 28  DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             ++     F+  P  ++++ G+ G GKTT+ GKL++   + G   +LAA D  R  A+ 
Sbjct: 88  GQTRTVR--FAKTPSTIVMLAGLQGAGKTTLAGKLAQWFKEEGHSPLLAACDLQRPNAVT 145

Query: 157 QLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           QL++  +R        E G+   D   +A +A  +A+ K  DV+IIDTAGRL  ++ +MA
Sbjct: 146 QLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMA 205

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
               +           P   L V+DA  GQ+A+     F    G  G+++TK+DG ARGG
Sbjct: 206 QAADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGG 259

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
             + I      P+ F   GEG+ D + F     ++ I   LD G+
Sbjct: 260 AALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301


>gi|294055143|ref|YP_003548801.1| signal recognition particle protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614476|gb|ADE54631.1| signal recognition particle protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 453

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 138/276 (50%), Gaps = 17/276 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSK 101
           +E+   L+ +D+   VA++ V    E+ + +   K V+  Q+V+    ++IH  L+ L  
Sbjct: 32  KEVRKALLSADVHFKVAREFVSNVKEQCVGQEVLKSVTPGQQVI----KIIHDELVKLLG 87

Query: 102 PFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLK 159
               +    +P  I++VG++G GKTT  GKL+  ++     +  L A D +R AAIDQL+
Sbjct: 88  EGTTELEDKKPLRIMMVGLHGSGKTTSSGKLANYLAKKRDYRPALIACDVYRPAAIDQLE 147

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             +     +F       +   +     + A+A   +++I DTAGRL  +  L+  I  + 
Sbjct: 148 TLSQTVGCEFYGDREEKNVVTIGKRGLEAAKAADANLIIFDTAGRLQIDEDLIEEIKDLK 207

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
             ++      P  VL V DA  GQ A+   + FH     TG+I+TK+DG ARGG  + + 
Sbjct: 208 AAVQ------PDEVLLVADAALGQEAVNVAKHFHEAVDVTGIILTKLDGDARGGAALSMK 261

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                P+ F+G+GE +++ + F     ++ I G  D
Sbjct: 262 TITDTPIKFMGIGEKVDEFDVFHPDRMASRILGMGD 297


>gi|290476252|ref|YP_003469152.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Xenorhabdus bovienii
           SS-2004]
 gi|289175585|emb|CBJ82388.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Xenorhabdus bovienii
           SS-2004]
          Length = 453

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 149/308 (48%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D +++ L ++   L+ +D+ + V +  +  +      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRIKENAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT-VIGK 130
            +V+      Q  +  V   + K +  ++   N   +  P V+L+ G+ G GKTT V   
Sbjct: 62  HEVNKSLTPGQEFVKIVQNELVKAMGEVNSELNLS-AQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
                     KV++ + D +R AAI QL+  ++    DF  S+       +A +A + A+
Sbjct: 121 GKLLKEKNKKKVLVVSVDVYRPAAIKQLETLSEAVDIDFFPSDPQEKPVDIANKAIQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALR 247
            K  DVL++DTAGRLH +  +M  I  +         HA   P   L V+DA TGQ+A  
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKAV---------HAAINPVETLFVVDAMTGQDAAN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     +
Sbjct: 232 TAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|240137226|ref|YP_002961695.1| signal recognition particle protein, GTPase [Methylobacterium
           extorquens AM1]
 gi|240007192|gb|ACS38418.1| signal recognition particle protein, GTPase [Methylobacterium
           extorquens AM1]
          Length = 520

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  IL+VG+ G GKTT   K++++++     +V+LA+ DT R AA++QL + A +   + 
Sbjct: 100 PVAILMVGLQGSGKTTTTAKIARRLNQRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVES 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G  A  +A  A + A+    DV+++DTAGR   +  LM    ++    K      
Sbjct: 160 LPIVAGQSAVQIAKRAMEAARLGGFDVVMLDTAGRTTVDEGLMNEAAEVKAATK------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V DA TGQ+A+     F    G TG+++T+MDG +RGG  + +      P+  +
Sbjct: 214 PHEVLLVADALTGQDAVNTARAFDERLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLV 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE ++ LE F  +  +  I G  D
Sbjct: 274 GVGEKVDALEEFHPQRVANRILGMGD 299


>gi|226941400|ref|YP_002796474.1| Ffh [Laribacter hongkongensis HLHK9]
 gi|226716327|gb|ACO75465.1| Ffh [Laribacter hongkongensis HLHK9]
          Length = 450

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 149/290 (51%), Gaps = 22/290 (7%)

Query: 38  SRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS 89
           +R  +D +++ + ++   L+ +D+ + V +  V ++  +   ++V       Q V+  V 
Sbjct: 20  ARLTEDNIKDAMREVRMALLEADVALPVVKAFVNQVRERAMGQEVMGSLTPGQAVVGVVH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGD 148
           E + K++   +   N   +  P ++L+ G+ G GKTT  GKL+K + +   K +L  + D
Sbjct: 80  EELVKLMGEQNDSLNL-AAVPPAIVLMAGLQGAGKTTTTGKLAKLLKEKSKKKVLLVSTD 138

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +R AAI+QLK+ A +   ++  S +G     +A  A   A+    DVLI+DTAGRL  +
Sbjct: 139 VYRPAAIEQLKLLAGQVEVEWFPSSVGQLPVDIARAAVDHAKRHYFDVLIVDTAGRLAID 198

Query: 209 SILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             +M  I  +         HA   P   L V+DA  GQ+A+   + F+     TG+++TK
Sbjct: 199 EAMMNEIKAI---------HAAINPVETLFVVDAMQGQDAVNTAQAFNEALPLTGVVLTK 249

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +DG ARGG  + +      P+ F+GVGE +  LEPF     ++ I G  D
Sbjct: 250 LDGDARGGAALSVRNVTGKPIKFIGVGEKLTGLEPFHPDRMASRILGMGD 299


>gi|213962455|ref|ZP_03390717.1| signal recognition particle protein [Capnocytophaga sputigena
           Capno]
 gi|213954781|gb|EEB66101.1| signal recognition particle protein [Capnocytophaga sputigena
           Capno]
          Length = 442

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 111/211 (52%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADR 164
           + S  P +IL+ G+ G GKTT  GKL+  + +   K  +L A D +R AAIDQL I  ++
Sbjct: 94  NLSGNPTIILMSGLQGSGKTTFSGKLANYLKNKKNKKPLLVACDVYRPAAIDQLHIVGEQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                   +  S+   +A +  + A+   ++V+I+DTAGRL  +  +M  I  + + L  
Sbjct: 154 VGVPVFSDKGNSNPVDIAQKGVQYAKENHLNVVIVDTAGRLAVDEQMMTEISNIHKALN- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+DA TGQ+A+   + F+ V    G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDAMTGQDAVNTAKAFNDVLNFDGVILTKLDGDTRGGAAITIKSVVNK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE ++ ++ F  +  +  I G  D
Sbjct: 268 PIKFVGTGEKMDAIDVFYPERMADRILGMGD 298


>gi|300172914|ref|YP_003772079.1| signal recognition particle protein [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887292|emb|CBL91260.1| Signal recognition particle protein [Leuconostoc gasicomitatum LMG
           18811]
          Length = 489

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 130/271 (47%), Gaps = 17/271 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+     +K V  +  K    D+       Q+V+  V++ +   +   + P N   
Sbjct: 39  LLEADVNYDTVKKFVANVREKASGADILEGLNPAQQVVKIVNDELTTTMGEEAAPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P +I++ G+ G GKTT + KL+ K+  +   + +L A D +R AAIDQL+I      
Sbjct: 98  PKIPTIIMMAGLQGAGKTTTVAKLAYKLKKEENARPLLIAADVYRPAAIDQLEILG--RD 155

Query: 167 ADFVCSEIGS--DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            +    ++G+  +   +  +   +A   K D + IDTAGRL  + +LM  +  +  +   
Sbjct: 156 LEIPVFQLGTAVNPREIVRQGLAKAAENKNDYVFIDTAGRLQIDDVLMQELKDVAEIAH- 214

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  +L  +DA TGQNA    + F A    TG+++TK+DG  RGG  + I      
Sbjct: 215 -----PDEILLTVDAMTGQNAAETAKGFSAALDLTGVVLTKLDGDTRGGAALSIRDVTGK 269

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE   DL+ F     ++ I G  D
Sbjct: 270 PIKFVGQGEKPTDLDVFYPDRMASRILGMGD 300


>gi|326422437|gb|EGD71836.1| Putative signal recognition particle protein [Candidatus
           Parvarchaeum acidiphilum ARMAN-4_'5-way FS']
          Length = 437

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 146/296 (49%), Gaps = 26/296 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEEL---LTKR 74
           F   S +L+EGI  +++S   ++ + E L D+   L   D+  A  +K+++++   +   
Sbjct: 3   FEGLSNRLREGIKKLLNSTG-NEKIEEVLTDIQTALTEGDVDKATIEKLMKKIRDDIKSN 61

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
             K +  +  + DV   I+  L+ +  ++    +    P  IL+VG+ G GKTT   KL+
Sbjct: 62  KGKGLVTREKVIDV---IYNNLVEIVGNEETKINIDSVPFKILLVGLFGSGKTTTAAKLA 118

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA--Q 190
                 G +V+L   DTFR AA  QL+  + + +        G D      +A K A   
Sbjct: 119 NYYKKRGYRVLLLGLDTFRPAAYQQLEQLSKQINVKIAGG--GDDPV----KAIKNAIGS 172

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  D++I D+AGR     IL   + K I+++K  +   P++V  V+ A  GQNA  QV+
Sbjct: 173 FKNFDIVIADSAGR----DILDNALVKEIKLVK--ETLKPNNVTLVIPADLGQNASIQVK 226

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            FH +     +I+TK DGTA GGG +         V F+G GE IND E F  K F
Sbjct: 227 GFHELLDINNIILTKTDGTANGGGALTAAYISGAKVTFIGTGEKINDFEEFNPKKF 282


>gi|282854588|ref|ZP_06263923.1| signal recognition particle protein [Propionibacterium acnes J139]
 gi|282582170|gb|EFB87552.1| signal recognition particle protein [Propionibacterium acnes J139]
 gi|314981873|gb|EFT25966.1| signal recognition particle protein [Propionibacterium acnes
           HL110PA3]
 gi|315090705|gb|EFT62681.1| signal recognition particle protein [Propionibacterium acnes
           HL110PA4]
          Length = 528

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 144/285 (50%), Gaps = 20/285 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    ++   L+ +D+ ++V ++ V  +  + + +++S      Q+++  V+E + ++L 
Sbjct: 28  DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             ++     F+  P  ++++ G+ G GKTT+ GKL++   + G   +LAA D  R  A+ 
Sbjct: 88  GQTRTVR--FAKTPSTIVMLAGLQGAGKTTLAGKLAQWFKEEGHSPLLAACDLQRPNAVT 145

Query: 157 QLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           QL++  +R        E G+   D   +A +A  +A+ K  DV+IIDTAGRL  ++ +MA
Sbjct: 146 QLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMA 205

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
               +           P   L V+DA  GQ+A+     F    G  G+++TK+DG ARGG
Sbjct: 206 QAADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGG 259

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
             + I      P+ F   GEG+ D + F     ++ I   LD G+
Sbjct: 260 AALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301


>gi|298207766|ref|YP_003715945.1| signal recognition particle protein [Croceibacter atlanticus
           HTCC2559]
 gi|83850404|gb|EAP88272.1| signal recognition particle protein [Croceibacter atlanticus
           HTCC2559]
          Length = 442

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADR 164
           + S  P +IL+ G+ G GKTT  GKL+  + +   K  +L A D +R AAI+QL +  ++
Sbjct: 94  NLSGNPSIILMSGLQGSGKTTFSGKLANFLKNKKTKKPLLVACDIYRPAAINQLHVVGEQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +    E   D  A++  A   A+    +V+IIDTAGRL  +  +M  I  + + ++ 
Sbjct: 154 IGVEVFSDEGNQDPVAISKAAIAHAKQNGHNVVIIDTAGRLAVDEAMMTEISNIHKAIQ- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+D+ TGQ+A+   + F+      G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDTLNFDGVILTKLDGDTRGGAAISIKSVVDK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE ++ ++ F     +  I G  D
Sbjct: 268 PIKFIGTGEKMDAIDVFYPSRMADRILGMGD 298


>gi|161528039|ref|YP_001581865.1| GTP-binding signal recognition particle [Nitrosopumilus maritimus
           SCM1]
 gi|160339340|gb|ABX12427.1| GTP-binding signal recognition particle SRP54 G- domain
           [Nitrosopumilus maritimus SCM1]
          Length = 442

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 149/302 (49%), Gaps = 27/302 (8%)

Query: 28  LKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRY-------- 75
           L + I  I+ S  +D+ + +EL    +  L++SD+ V +  +I + L  +          
Sbjct: 9   LGDAIKKIVKSSGIDEELIKELSKDVQRALLQSDVNVRLVLEITKHLEERALNETPPPGL 68

Query: 76  AKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSK 133
           ++   + ++LYD +S L       L     +DF   + + I+++G+ G GKTTV  KL+K
Sbjct: 69  SRKNHIVKILYDELSNL-------LGNESEFDFKPGKQNKIILLGIQGSGKTTVASKLAK 121

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            ++  G KV +   DT+R  A+ QLK   ++++ +    E   D+ ++        + + 
Sbjct: 122 FLTGQGYKVGVVGADTYRPGALVQLKTMCEKSNVEVYGEESNKDSPSIVKNGLNYFKDQS 181

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV++IDTAGR      L+    +M R+ K  DP      L V+D T GQ    Q E FH
Sbjct: 182 LDVILIDTAGRHKEEQDLLE---EMDRINKVADPDL---ALLVIDGTIGQQCFNQAEAFH 235

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                 G+I+TK+D +A+GGG +         + ++G GE I+DLE F    F   + G 
Sbjct: 236 KTIPVGGVIITKLDSSAKGGGALAASAATGAQIMYIGTGERIDDLEKFSPTRFVGRLLGM 295

Query: 314 LD 315
            D
Sbjct: 296 GD 297


>gi|163814209|ref|ZP_02205601.1| hypothetical protein COPEUT_00363 [Coprococcus eutactus ATCC 27759]
 gi|158450658|gb|EDP27653.1| hypothetical protein COPEUT_00363 [Coprococcus eutactus ATCC 27759]
          Length = 448

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 149/304 (49%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     + S   L +D V+E ++++   L+ +D+   V +  V+ +  +   
Sbjct: 3   FDSLSDKLQNVFKKLRSKGVLTEDDVKEAMKEVKRALLEADVNFKVVKSFVKSVSDRAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V         V+  V E + K++           S+   +I++ G+ G GKTT   KL
Sbjct: 63  EEVLKGLNPGHMVIKIVKEEMDKLMGSEMTEIKLRPSNEITIIMMCGLQGAGKTTTAAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +  + G K +L A D +R AAI QL++  ++           +    +A  A + A  
Sbjct: 123 AYQFKNKGKKPLLVACDVYRPAAIKQLQVNGEKVGVPVFAMGDNNKPLDIAKAAIQHAAK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             ++++ +DTAGRLH +  +M    ++  +   LD    +++L V D+ TGQ+A+     
Sbjct: 183 NNINLVFLDTAGRLHVDEDMM---DELAEIKANLD--IAYTILTV-DSMTGQDAVNVATT 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + I      P+ + G+GE + DLEPF     ++ I 
Sbjct: 237 FNDKIGIDGVILTKLDGDTRGGAALSIKAVTGKPILYSGMGEKLTDLEPFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|318056560|ref|ZP_07975283.1| signal recognition particle protein [Streptomyces sp. SA3_actG]
 gi|318080610|ref|ZP_07987942.1| signal recognition particle protein [Streptomyces sp. SA3_actF]
 gi|333024175|ref|ZP_08452239.1| putative signal recognition particle protein [Streptomyces sp.
           Tu6071]
 gi|332744027|gb|EGJ74468.1| putative signal recognition particle protein [Streptomyces sp.
           Tu6071]
          Length = 513

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++++  +   ++VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIKKVKERALGEEVSKALNPAQQVIKIVNEELVGILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL + +   G   +L A D  R  A++Q
Sbjct: 88  GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLQGQGHSPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        + G+   D   +A ++ + A+ K+ DV+I+DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVGIYAPQPGNGVGDPVQVAKDSVEYARTKQFDVVIVDTAGRLGIDQELMRQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I       V F   GE + D + F
Sbjct: 261 ALSIAHVTGKQVMFASNGEKLEDFDAF 287


>gi|239946690|ref|ZP_04698443.1| signal recognition particle protein [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239920966|gb|EER20990.1| signal recognition particle protein [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 449

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 149/290 (51%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89
           I++  ++D  +R+ +   L+ SD+ + V +  + E+  K   ++V  SV   Q ++  + 
Sbjct: 21  ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P V  L+VG+ G GKTT   KL+ ++ +   KV+L + D
Sbjct: 80  EEMINLLASSGNETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLKNQNKKVLLVSLD 139

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL I A+    + +    G     +   A  +A+    DV+I DTAGR   +
Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYDVVIYDTAGRTQID 199

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M     + ++++      P   L V+D+ TGQ+A+     F+     +GLI++++DG
Sbjct: 200 KEMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTASSFNEKLEISGLILSRIDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            ++GG  + +    K P+ FL  GE + DLE F A+  ++ I   LD G+
Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGEKLTDLEEFDAERLASRI---LDMGD 300


>gi|238882842|gb|EEQ46480.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 535

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 145/289 (50%), Gaps = 33/289 (11%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMP-LS 100
           D V ++  + LI  +I   +A  I++++ TK  A K V++      +++ + K+L P +S
Sbjct: 245 DEVSKKFREQLITKNITPGIATTIIDKIKTKLSANKKVTMAVYKQALTDELTKILTPNVS 304

Query: 101 KPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
                    N + + RP+VI VVGVNGVGK+T + KL+       L V++ A DTFRS A
Sbjct: 305 TDLLHDIKRNAELNTRPYVISVVGVNGVGKSTNLAKLAFWFLQNNLNVLICACDTFRSGA 364

Query: 155 IDQLKIWAD-----RTSADFVCSEI---------GSDAAALAYEAFKQAQAKKVDVLIID 200
           ++QLK+  +       ++    S I         G      A +A + A+  K D+++ID
Sbjct: 365 VEQLKVHVNNLNRLNEASTNTKSRIGIFEKGYGSGDHVVQTAKQAVQYAEENKFDIVLID 424

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGR H+N+ LMA + K        D   P+ ++ V +A  G +++ Q   F+   G   
Sbjct: 425 TAGRTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQATNFNKAFGNKR 478

Query: 261 ----LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                I++K+D      G +I +V+   +P+ F+G G+   D++    K
Sbjct: 479 TLDFFIISKVDTVGDLVGTMINMVIATNVPILFVGTGQTYTDIKRLSVK 527


>gi|254458732|ref|ZP_05072156.1| signal recognition particle protein [Campylobacterales bacterium GD
           1]
 gi|207084498|gb|EDZ61786.1| signal recognition particle protein [Campylobacterales bacterium GD
           1]
          Length = 448

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 135/257 (52%), Gaps = 8/257 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNW 105
           +EL+  L+++D+   V ++++ E+  +     +   + L  +   ++K+L +  +K F +
Sbjct: 30  DELKKSLLKADVNHKVVKELIAEVQIETKKNGIGKDQFLDALRAALYKLLEIGGNKGFTF 89

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
              + P VIL+ G+ G GKTT  GKL+  + +   KV++ A D  R AA++QL+    + 
Sbjct: 90  -VPNPPTVILMTGLQGSGKTTTTGKLANYLKNKQKKVLIVAADLQRLAAVEQLRQITTQI 148

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             +   +E   +   +   A K+A     DV++IDTAGRL  +  LM      +  +K+ 
Sbjct: 149 GVELYENEATKNPVEVVAAALKKANDGIYDVVLIDTAGRLAIDDELM----NELEAVKK- 203

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  +  V D+ TGQ+A++    F    G  G+I++K DG ++GG  + +     +P
Sbjct: 204 -AANPSEIFYVADSMTGQDAVKTATSFKEKIGIDGVILSKYDGDSKGGVALGLASQVLVP 262

Query: 286 VYFLGVGEGINDLEPFV 302
           + F+G GE + DLE F+
Sbjct: 263 LRFIGSGEKMEDLEVFL 279


>gi|13507800|ref|NP_109749.1| signal recognition particle protein [Mycoplasma pneumoniae M129]
 gi|2500882|sp|P75054|SRP54_MYCPN RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|1673748|gb|AAB95741.1| signal recognition particle protein [Mycoplasma pneumoniae M129]
          Length = 450

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 136/280 (48%), Gaps = 20/280 (7%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPL 99
            V +E+   L+ +D+ + V +  ++ +  +   + V     +Q+ L  V  +  +++  L
Sbjct: 30  AVLKEIRIALLDADVNLLVVKNFIKAIREQTVGQTVEPGQDLQKWLLKV--IKQELINIL 87

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAAGDTFRSAAID 156
           S+P     S RP  ++VVG+ G GKTT  GKL+   KK      K ML A D +R AAID
Sbjct: 88  SQPNQEITSKRPLKVMVVGLQGSGKTTTCGKLAVWLKKQFQQ--KAMLVALDIYRPAAID 145

Query: 157 QLKIWADRTSADFVCSEIGSDAA-ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           QL   A++T + F     G+ A      EA K  +      +I DTAGRL  N  LM   
Sbjct: 146 QLATLAEQTESVFFAK--GTQAPDQTTKEAVKTFKESGCQAIICDTAGRLQTNQELM--- 200

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +++ +   L P     +L V+D  +GQ  +   + FH     TG I+TK+D  AR G  
Sbjct: 201 DELVAIKNELHPD---EILMVVDGLSGQEIINVAKEFHNRLKLTGFIITKLDSDARAGAA 257

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + +    ++P+  +G  E +  LE F  +  ++ I G  D
Sbjct: 258 LSLTSLLEVPIKLMGTSEKLTGLEQFHPERIASRILGLGD 297


>gi|289450230|ref|YP_003475458.1| signal recognition particle protein [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184777|gb|ADC91202.1| signal recognition particle protein [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 452

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FAS S KL+     I    R+ +     +  E+   L+ +D+   V + ++ E+     A
Sbjct: 4   FASLSDKLQAITAKIGRQSRITEADLKTMMREIRLALLEADVNYQVVKNLIAEI--SEAA 61

Query: 77  KDVSVQRVL---YDVSELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVIGK 130
           K  +V + L     + +++H+ L+ L           P    VI++ G+ G GKTT   K
Sbjct: 62  KGEAVMQSLTPGQQIVKIVHESLIELLSVGETKLKVNPSGFTVIMLYGLQGSGKTTTAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L K +   G K ++ + DT R AA +QL I  D+       +     AA +A EA ++A+
Sbjct: 122 LGKILKSRGKKPLVTSVDTHRPAAAEQLNILCDKIQVPCYINPPEKHAAKIAREAVERAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D LI+DTAGR+  +  LM  + ++   +K      P   L ++D+  GQ A+    
Sbjct: 182 YLLCDTLIVDTAGRMTIDEELMQELKELENTVK------PDERLLIVDSMIGQEAVNIAL 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G IMTK+DG ARGG  + I    + P+ F+  GE  + +E F     ++ I
Sbjct: 236 EFERQIGLDGFIMTKLDGDARGGAALSISKMTEKPIKFICTGEKTDAIEEFHPDRLASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|282889840|ref|ZP_06298379.1| hypothetical protein pah_c004o251 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500414|gb|EFB42694.1| hypothetical protein pah_c004o251 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 442

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 109/212 (51%), Gaps = 8/212 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           + +  P VI++ G+ G GKTT   KL+K  K  +     +L A D  R AAI+QL+    
Sbjct: 94  NLTGNPAVIMLCGLQGCGKTTHSAKLAKYLKRKNNCKNPLLVACDLQRPAAINQLQTLGA 153

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +            D   +A +A  QA+ +  DVLI+DTAGRLH +  LM      +++ K
Sbjct: 154 QIGVPVFTIPGEKDPVKVAQQALAQAKKENHDVLIVDTAGRLHVDEELM------LQLEK 207

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             D   P  +L V +A TGQ+A++    F+A    TG I+T +DG+ RGG  I I     
Sbjct: 208 VRDALQPGEILFVANAATGQDAVKVAAEFNARVAVTGTILTMLDGSTRGGAAISIKEVTG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F G+GE ++D++ F     +  I G  D
Sbjct: 268 KPLKFEGIGEKLDDIQVFNPMSMADRILGMGD 299


>gi|229821026|ref|YP_002882552.1| signal recognition particle protein [Beutenbergia cavernae DSM
           12333]
 gi|229566939|gb|ACQ80790.1| signal recognition particle protein [Beutenbergia cavernae DSM
           12333]
          Length = 528

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 24/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L    + +    RL +   E    E+   L+ +D+ + V +     +  +  +
Sbjct: 2   FATLSDRLSAAFSSLRGKGRLSEADIEATVTEIRRALLDADVALPVVRSFTATVRERASS 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130
            +VS      Q+++  V+E + ++L   ++     F+ RP  VIL+ G+ G GKTT+ GK
Sbjct: 62  AEVSRALNPSQQIVKIVNEELTQILGGSARELR--FAKRPPTVILLAGLQGAGKTTLAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L   +   G   +L A D  R  A+ QL+I  +         E G+   D  A+A     
Sbjct: 120 LGHWLRSEGHTPLLVAADLQRPNAVQQLQIVGENAGVPVWAPEPGNGTGDPVAVARTGVA 179

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ +  DV+++DTAGRL  ++ +M      IR     D  +P  +L V+DA  GQ+A+ 
Sbjct: 180 HAKDRYYDVVVVDTAGRLGVDAEMMRQAAD-IR-----DAVSPDEILFVVDAMIGQDAVT 233

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F    G TG++++K+DG ARGG  + +      PV F   GE + D E F     +
Sbjct: 234 TANAFAEGVGFTGVVLSKLDGDARGGAALSVAQVTGAPVLFASTGEKVTDFERFHPDRMA 293

Query: 308 AVITGCLDYGE 318
           + I   LD G+
Sbjct: 294 SRI---LDMGD 301


>gi|325963720|ref|YP_004241626.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469807|gb|ADX73492.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 527

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 150/317 (47%), Gaps = 29/317 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLTEADVDATVREIRRALLDADVAVPVVREFTGRVRERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E + ++L   ++       + P +I++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPSQQIVKIVNEELVEILGGETRRIRL-AKNGPTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS----------DAAAL 181
           SK +   G   ML A D  R  A+ QL++   R          G+          D  A+
Sbjct: 121 SKWLKAQGHSPMLVACDLQRPNAVTQLQVVGQRAKVPVFAPHPGATSTELDQPAGDPVAV 180

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A    ++A+ K  DV+I+DTAGRL  ++ +M    ++ R +       P+ VL V+D+  
Sbjct: 181 ARAGVEEARQKLHDVVIVDTAGRLGVDADMMEQARQIRRAI------VPNEVLFVIDSMI 234

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+A+     F      TG++++K+DG ARGG  + +      PV F   GEG++D E F
Sbjct: 235 GQDAVNTALAFDEGVNFTGIVLSKLDGDARGGAALSVASVTGKPVMFASTGEGLDDFELF 294

Query: 302 VAKDFSAVITGCLDYGE 318
                ++ I   LD G+
Sbjct: 295 HPDRMASRI---LDMGD 308


>gi|314966101|gb|EFT10200.1| signal recognition particle protein [Propionibacterium acnes
           HL082PA2]
 gi|315094952|gb|EFT66928.1| signal recognition particle protein [Propionibacterium acnes
           HL060PA1]
          Length = 528

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 144/285 (50%), Gaps = 20/285 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    ++   L+ +D+ ++V ++ V  +  + + +++S      Q+++  V+E + ++L 
Sbjct: 28  DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             ++     F+  P  ++++ G+ G GKTT+ GKL++   + G   +LAA D  R  A+ 
Sbjct: 88  GQTRTVR--FAKTPSTIVMLAGLQGAGKTTLAGKLAQWFKEEGHSPLLAACDLQRPNAVT 145

Query: 157 QLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           QL++  +R        E G+   D   +A +A  +A+ K  DV+IIDTAGRL  ++ +MA
Sbjct: 146 QLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMA 205

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
               +           P   L V+DA  GQ+A+     F    G  G+++TK+DG ARGG
Sbjct: 206 QAADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGG 259

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
             + I      P+ F   GEG+ D + F     ++ I   LD G+
Sbjct: 260 AALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301


>gi|302522152|ref|ZP_07274494.1| signal recognition particle protein [Streptomyces sp. SPB78]
 gi|302431047|gb|EFL02863.1| signal recognition particle protein [Streptomyces sp. SPB78]
          Length = 561

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 141/284 (49%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++++  +   ++VS      Q+V+  V+E +  +L 
Sbjct: 76  DATAREIRIALLEADVALPVVRAFIKKVKERALGEEVSKALNPAQQVIKIVNEELVGILG 135

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL + +   G   +L A D  R  A++Q
Sbjct: 136 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLQGQGHSPLLVACDLQRPNAVNQ 194

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        + G+   D   +A ++ + A+ K+ DV+I+DTAGRL  +  LM  
Sbjct: 195 LSVVAERAGVGIYAPQPGNGVGDPVQVAKDSVEYARTKQFDVVIVDTAGRLGIDQELMRQ 254

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +       D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 255 AADI------RDAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 308

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I       V F   GE + D + F     ++ I   LD G+
Sbjct: 309 ALSIAHVTGKQVMFASNGEKLEDFDAFHPDRMASRI---LDMGD 349


>gi|237813885|ref|YP_002898336.1| signal recognition particle protein [Burkholderia pseudomallei
           MSHR346]
 gi|237502771|gb|ACQ95089.1| signal recognition particle protein [Burkholderia pseudomallei
           MSHR346]
          Length = 455

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQIGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVL++DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSTPDQKPVDIANAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHTALK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PVETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEIFHPDRMANRILGMGD 303


>gi|123974885|ref|XP_001314049.1| SRP54-type protein [Trichomonas vaginalis G3]
 gi|121896072|gb|EAY01234.1| SRP54-type protein, putative [Trichomonas vaginalis G3]
          Length = 482

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 99/206 (48%), Gaps = 6/206 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+V + VG+ G GKTT   KL       G KV L   DTFR+ A +QL   A      +
Sbjct: 99  KPNVYMFVGLQGSGKTTTCTKLGLYYKKRGFKVGLVGADTFRAGAREQLMQNAQSVGLPY 158

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
               +  D  ++A    ++ + ++ D++I+DT+G+    + L   + +M       D   
Sbjct: 159 YVDLVNIDPISVAISGVEKFKRERYDMIIVDTSGKHAQENALFQEMQEM------QDAIN 212

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ VLDA  GQ+A  Q   F        +IMTK+D   +GGG I  V   K P+ F 
Sbjct: 213 PDEIIFVLDANIGQSAFDQATAFSKAVDIGSIIMTKLDSGTKGGGAISAVAATKCPIAFY 272

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE ++ LE F    F A I G  D
Sbjct: 273 GTGEEMDQLEIFDPNSFIANILGYAD 298


>gi|323135868|ref|ZP_08070951.1| signal recognition particle protein [Methylocystis sp. ATCC 49242]
 gi|322398959|gb|EFY01478.1| signal recognition particle protein [Methylocystis sp. ATCC 49242]
          Length = 512

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 141/275 (51%), Gaps = 15/275 (5%)

Query: 48  ELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V    A K+ +  +     K VS  Q V+  V++++ + L   ++P
Sbjct: 33  EIRRALLEADVALDVVRSFADKVRDRAVGAGVIKSVSPGQMVVKIVNDVLIETLGETAEP 92

Query: 103 FNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKI 160
              D + +P + I++VG+ G GKTT   K++K++ +  G + ++A+ D  R AA +QL +
Sbjct: 93  I--DLAAKPPIAIMMVGLQGAGKTTTTAKIAKRLKERHGKRSLMASLDVKRPAAQEQLAV 150

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
              +   D +    G     +A  A + A+ +  DV+++DTAGR H +  LM  +  +  
Sbjct: 151 LGRQVEVDTLPIVPGQTPLQIARRAMEAARLEGYDVVLLDTAGRTHIDEPLMQEMADIKS 210

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
                    PH +L V DA TGQ+A+   + F    G TG+++T+MDG  RGG  + +  
Sbjct: 211 YAN------PHEILLVADALTGQDAVNLAKNFDERVGLTGIVLTRMDGDGRGGAALSMRY 264

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+  +GVGE ++ L+ F     +  I G  D
Sbjct: 265 VTGKPIKLIGVGEKMDALDEFAPTRIANRILGMGD 299


>gi|26553705|ref|NP_757639.1| signal recognition particle GTPase [Mycoplasma penetrans HF-2]
 gi|26453712|dbj|BAC44043.1| signal recognition particle GTPase [Mycoplasma penetrans HF-2]
          Length = 445

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 101/199 (50%), Gaps = 12/199 (6%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           DF  +   I++VG+ G GKTT   K++   K   D   K +L A D +R AAIDQL+  +
Sbjct: 95  DFEKKKLKIMMVGLQGSGKTTTAAKIASFAKGKFDK--KPLLVACDIYRPAAIDQLRTLS 152

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           +    DF   +   D    + EA   A   K D+++IDTAGRLH N  LM  + K+ +  
Sbjct: 153 EEIKVDFYDKK-QQDPVKTSKEALDIADKNKNDLVVIDTAGRLHTNKELMEELQKIKKAT 211

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                  P  +L V+DA  GQ+     + FH     TG+++TK+D  AR G  + +    
Sbjct: 212 N------PDEILLVVDAMAGQDITNVAQEFHNNLNLTGIVITKLDSDARAGAALSLRSIL 265

Query: 283 KIPVYFLGVGEGINDLEPF 301
            +P+   GVGE +  L+ F
Sbjct: 266 DVPIKLTGVGEKVGSLDVF 284


>gi|21230651|ref|NP_636568.1| signal recognition particle protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769354|ref|YP_244116.1| signal recognition particle protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992540|ref|YP_001904550.1| signal recognition particle protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112236|gb|AAM40492.1| signal recognition particle protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574686|gb|AAY50096.1| signal recognition particle protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734300|emb|CAP52510.1| signal recognition particle protein [Xanthomonas campestris pv.
           campestris]
          Length = 458

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 138/275 (50%), Gaps = 22/275 (8%)

Query: 39  RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q ++  V +
Sbjct: 21  RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   +   N +    P +IL+ G+ G GKTT +GKL+K M +   K VM+ + D 
Sbjct: 81  ELTAVMGAAAADLNLNVPA-PAIILMAGLQGAGKTTTVGKLAKHMKEKRKKKVMVVSADV 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A++    F  S+       +   A   A+    DVL++DTAGRL  ++
Sbjct: 140 YRPAAIEQLKTLAEQVGVLFFPSDASQKPVDIVRAAISDARKSFADVLLVDTAGRLAIDA 199

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +M  I  +         HA   P   L V+DA TGQ+A    + F      TG+++TK 
Sbjct: 200 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 250

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           DG ARGG  + +      P+ F+G GE  + L+ F
Sbjct: 251 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 285


>gi|301633520|gb|ADK87074.1| signal recognition particle protein [Mycoplasma pneumoniae FH]
          Length = 450

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 136/280 (48%), Gaps = 20/280 (7%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPL 99
            V +E+   L+ +D+ + V +  ++ +  +   + V     +Q+ L  V  +  +++  L
Sbjct: 30  AVLKEIRIALLDADVNLLVVKNFIKAIREQTVGQTVEPGQDLQKWLLKV--IKQELINIL 87

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAAGDTFRSAAID 156
           S+P     S RP  ++VVG+ G GKTT  GKL+   KK      K ML A D +R AAID
Sbjct: 88  SQPNQEITSKRPLKVMVVGLQGSGKTTTCGKLAVWLKKQFQQ--KAMLVALDIYRPAAID 145

Query: 157 QLKIWADRTSADFVCSEIGSDAA-ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           QL   A++T + F     G+ A      EA K  +      +I DTAGRL  N  LM   
Sbjct: 146 QLATLAEQTESVFFAK--GTQAPDQTTKEAVKTFKESGCQAIICDTAGRLQTNQELM--- 200

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +++ +   L P     +L V+D  +GQ  +   + FH     TG I+TK+D  AR G  
Sbjct: 201 DELVAIKNELHPD---EILMVVDGLSGQEIINVAKEFHNRLKLTGFIITKLDSDARAGAA 257

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + +    ++P+  +G  E +  LE F  +  ++ I G  D
Sbjct: 258 LSLTSLLEVPIKLMGTSEKLTGLEQFHPERIASRILGLGD 297


>gi|238063297|ref|ZP_04608006.1| signal recognition particle protein [Micromonospora sp. ATCC 39149]
 gi|237885108|gb|EEP73936.1| signal recognition particle protein [Micromonospora sp. ATCC 39149]
          Length = 527

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+++  V+E +  +L 
Sbjct: 28  DATAREIRLALLEADVALPVVKGFIANVKERARGAEVSQALNPAQQIVKIVNEELINVLG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              +   +     P VI++ G+ G GKTT+ GKL++ +   G + +L A D  R  A+ Q
Sbjct: 88  GEGRRLQF-AKQPPTVIMLAGLQGSGKTTLAGKLARWLKAQGHQPLLVAADLQRPNAVGQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++   R   +    E G+   D   +A  + + A+    D++I+DTAGRL  ++ +M  
Sbjct: 147 LQVLGGRAGVEVYAPEPGNGTGDPVQVARASIEHAKRAARDIVIVDTAGRLGIDAEMMRQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +       D   P  V+ V+DA  GQ+A+R  E F    G TG++++K+DG ARGG 
Sbjct: 207 AADI------RDAVNPDEVIFVIDAMVGQDAVRTAEAFRDGVGITGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F   GE + D + F     ++ I G  D
Sbjct: 261 ALSVREVTGQPILFASTGEKLEDFDVFHPDRMASRILGMGD 301


>gi|150004753|ref|YP_001299497.1| putative signal recognition protein [Bacteroides vulgatus ATCC
           8482]
 gi|254883142|ref|ZP_05255852.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294775183|ref|ZP_06740709.1| signal recognition particle protein [Bacteroides vulgatus PC510]
 gi|319641812|ref|ZP_07996491.1| hypothetical protein HMPREF9011_02089 [Bacteroides sp. 3_1_40A]
 gi|149933177|gb|ABR39875.1| putative signal recognition protein [Bacteroides vulgatus ATCC
           8482]
 gi|254835935|gb|EET16244.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294450995|gb|EFG19469.1| signal recognition particle protein [Bacteroides vulgatus PC510]
 gi|317386568|gb|EFV67468.1| hypothetical protein HMPREF9011_02089 [Bacteroides sp. 3_1_40A]
          Length = 440

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 109/194 (56%), Gaps = 9/194 (4%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           RP VIL+ G+ G GKTT  GKL++ + +    K +L A D +R AAI+QL++  ++    
Sbjct: 98  RPAVILMSGLQGSGKTTFSGKLARMLKTKKNRKPLLVACDVYRPAAIEQLRVLGEQIEVP 157

Query: 169 FVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
            V SE+ S +   +A  A  +A+AK  D++I+DTAGRL  +  +M  I  + + +     
Sbjct: 158 -VYSELDSKNPVQIALNAIHEAKAKGYDLVIVDTAGRLAIDEQMMNEIEAIKKAVN---- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P   L V+D+ TGQ+A+     F+      G+++TK+DG  RGG  + I      P+ 
Sbjct: 213 --PDETLFVVDSMTGQDAVNTAREFNERLDFNGVVLTKLDGDTRGGAALSIRTVVNKPIK 270

Query: 288 FLGVGEGINDLEPF 301
           F+G GE ++ ++ F
Sbjct: 271 FVGTGEKLDAIDQF 284


>gi|308462623|ref|XP_003093593.1| hypothetical protein CRE_02627 [Caenorhabditis remanei]
 gi|308249610|gb|EFO93562.1| hypothetical protein CRE_02627 [Caenorhabditis remanei]
          Length = 496

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 144/300 (48%), Gaps = 29/300 (9%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---------VEELL----TKRY 75
           K G   +I+   LD  ++E +   LI SD+ + + +++          EE++     +RY
Sbjct: 16  KLGQNTVINEEELDLMLKE-VCTALIESDVHIRLVKQLKDNVKKAINFEEIVGGANKRRY 74

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +Q+ +++  EL+ K++ P    F      R +V + VG+ G GKTT   K++   
Sbjct: 75  -----IQKTVFN--ELL-KLVDPGVTAFQPTKGKR-NVFMFVGLQGSGKTTTCTKMAYYY 125

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++   +  +
Sbjct: 126 QRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFTKEGFE 185

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++I+DT+GR    + L     +M++V   +    P +V+ V+DA+ GQ    Q   F   
Sbjct: 186 IIIVDTSGRHKQEASLFE---EMLQVSNAV---TPDNVVFVMDASIGQACEAQARAFSQT 239

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +I+TK+D  A+GGG +  V   K PV F+G GE I+D E F  K F   + G  D
Sbjct: 240 VDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLLGMGD 299


>gi|300309714|ref|YP_003773806.1| signal recognition particle subunit SRP54 protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072499|gb|ADJ61898.1| signal recognition particle subunit SRP54 protein [Herbaspirillum
           seropedicae SmR1]
          Length = 456

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 11/236 (4%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-G 139
           VQR   +++ L+   L P +   N+  +  P +IL+ G+ G GKTT +GKL+K + +   
Sbjct: 78  VQR---ELASLMGADLGPEASQLNF-ATQPPAIILMAGLQGAGKTTTVGKLAKYLRETTK 133

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+  + D +R AAI QL+    +  ADF  S+       +A  A   A+    +VLI+
Sbjct: 134 KKVLTVSADVYRPAAIGQLETVTGQAGADFFPSQATDKPVDIALAALDYAKKHHHEVLIV 193

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL  +  +M  I  +   +K      P   L V+DA  GQ+A+   + F      T
Sbjct: 194 DTAGRLGIDQAMMDEIRAVHAAIK------PIETLFVVDAMLGQDAINTAKAFSDALPLT 247

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G+++TK+DG +RGG  + +      P+ F GV E ++ LE F     +  I G  D
Sbjct: 248 GVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILGMGD 303


>gi|325955366|ref|YP_004239026.1| signal recognition particle protein [Weeksella virosa DSM 16922]
 gi|323437984|gb|ADX68448.1| signal recognition particle protein [Weeksella virosa DSM 16922]
          Length = 458

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 109/212 (51%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S  P +IL+ G+ G GKTT  GKL+  + +    K +L AGD +R AAI+QLK+  ++  
Sbjct: 96  SANPTIILIAGLQGSGKTTFSGKLANYLKTKKNKKPLLVAGDVYRPAAINQLKVLGEQIG 155

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            +    E   +   +A +A   A+    +V+I+DTAGRL  +  +M  I ++        
Sbjct: 156 VEVYAEEENKNPVEIAEKAIAYAKQNGNNVIILDTAGRLAVDQEMMDEIRRV-------- 207

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+D+ TGQ+A+     F+ V   +G+++TK+DG  RGG  + I     
Sbjct: 208 -HAATNPTETLFVVDSMTGQDAVNTARAFNDVLDYSGVVLTKLDGDTRGGAALTIKTVVD 266

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+  GE +  L+ F     +  I G  D
Sbjct: 267 KPIKFISTGEKMEALDLFYPSRMADRILGMGD 298


>gi|170017639|ref|YP_001728558.1| Signal recognition particle protein [Leuconostoc citreum KM20]
 gi|169804496|gb|ACA83114.1| Signal recognition particle protein [Leuconostoc citreum KM20]
          Length = 491

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 129/271 (47%), Gaps = 17/271 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+     +K V  +  K    D+       Q+V+  V++ +   +   + P N   
Sbjct: 39  LLEADVNYETVKKFVANVREKASGADILEGLNPAQQVVKIVNDELTATMGEEAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P VI++ G+ G GKTT + KL+ K+ S+   + +L A D +R AAIDQL+I      
Sbjct: 98  PKIPTVIMMAGLQGAGKTTTVAKLAYKLKSEQHARPLLIAADVYRPAAIDQLEILG--RD 155

Query: 167 ADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                 ++G+D     +  +   +A   K D + IDTAGRL  +  LM  +  +      
Sbjct: 156 LGIPVFQLGTDINPRDIVRQGLAEAHKNKNDYVFIDTAGRLQIDETLMQELKDIA----- 210

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            D  +P  +L  +DA TGQNA    + F A    TG+++TK+D   RGG  + I      
Sbjct: 211 -DIASPDEILLTVDAMTGQNAAETAKGFSAALDLTGVVLTKLDADTRGGAALSIRDVTGK 269

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE   DL+ F     ++ I G  D
Sbjct: 270 PIKFIGQGEKPTDLDVFYPDRMASRILGMGD 300


>gi|291545208|emb|CBL18317.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ruminococcus
           sp. 18P13]
          Length = 460

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 115/209 (55%), Gaps = 9/209 (4%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P VI++ G+ G GKTT   KL+K +   G + +L A D +R AAI+QL +  ++   
Sbjct: 98  SKPPCVIMMCGLQGSGKTTHAAKLAKYLKREGHRPLLVACDIYRPAAINQLMVVGEKAGV 157

Query: 168 DFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                E+G  D   ++ +A + A+    DV+I+DTAGRLH +  LM  + ++   ++   
Sbjct: 158 KVF--EMGQIDPVVISTQAMRYAKDYGHDVVILDTAGRLHIDEKLMDELKQIKAKVE--- 212

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+ ++ V+DA TGQ+A+   + F    G   ++M+K+D   RGG  + ++     P+
Sbjct: 213 ---PNEIMLVVDAMTGQDAVNVAKAFDEALGIDSVLMSKLDSDTRGGAALSVLAVTGKPI 269

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE +++ E F  +  ++ I G  D
Sbjct: 270 KFVGMGEKLDEFERFHPERMASRILGMGD 298


>gi|315636325|ref|ZP_07891575.1| signal recognition particle protein [Arcobacter butzleri JV22]
 gi|315479414|gb|EFU70097.1| signal recognition particle protein [Arcobacter butzleri JV22]
          Length = 455

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 107/195 (54%), Gaps = 6/195 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P  IL+ G+ G GKTT  GKL+  +     KV++AA D  R AA++QLK  A +   
Sbjct: 96  STPPTTILMTGLQGSGKTTTTGKLANYLKIRKKKVLVAACDLQRLAAVEQLKQIAAQIEV 155

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           D    +  S+   +A +A ++A  +  DVL+IDTAGRL  +  LM  + K I+     D 
Sbjct: 156 DIYFDDTESNPVKIALKAKEKAIKEHYDVLLIDTAGRLAIDEELMLQL-KDIK-----DA 209

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +  V D+ TG +A +    F    G  G+I++K DG  +GG  + I    ++P+ 
Sbjct: 210 INPNEIFYVADSLTGHDATKTAITFKEKIGIDGVILSKYDGDTKGGVALSIANQVEVPLR 269

Query: 288 FLGVGEGINDLEPFV 302
           F+G+GE + DLE F+
Sbjct: 270 FIGIGEKMPDLEVFI 284


>gi|226328731|ref|ZP_03804249.1| hypothetical protein PROPEN_02626 [Proteus penneri ATCC 35198]
 gi|225201917|gb|EEG84271.1| hypothetical protein PROPEN_02626 [Proteus penneri ATCC 35198]
          Length = 281

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 143/284 (50%), Gaps = 19/284 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL ++ ++E L ++   L+ +D+ + V +  +  +  K  A
Sbjct: 2   FENLSDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFIARV--KESA 59

Query: 77  KDVSVQRVLYDVSE---LIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGK 130
               V + L    E   ++   L+      N D    +  P V+L+ G+ G GKTT + K
Sbjct: 60  VGHEVNKSLTPGQEFVKIVQNELVNAMGEVNTDLDLSAQPPAVVLMAGLQGAGKTTSVAK 119

Query: 131 LSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L K + +   K +L  + D +R AAI QL+  A+    DF  S +  +   +A  A K A
Sbjct: 120 LGKFLKEKKKKKVLVVSADVYRPAAIKQLETLAETVGIDFFPSTVQENPVTIASNALKHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q +  DVL++DTAGRLH +  +M  I  + + +       P   L V+DA TGQ+A    
Sbjct: 180 QLQFYDVLLVDTAGRLHVDEGMMEEIQLLHKAIN------PVETLFVVDAMTGQDAANTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE
Sbjct: 234 KAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGE 277


>gi|196230889|ref|ZP_03129750.1| signal recognition particle protein [Chthoniobacter flavus
           Ellin428]
 gi|196225230|gb|EDY19739.1| signal recognition particle protein [Chthoniobacter flavus
           Ellin428]
          Length = 444

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 127/269 (47%), Gaps = 15/269 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   VA+  +  +  K   ++V       Q+++    + +  +L   ++P N + 
Sbjct: 38  LLEADVEFNVAKGFIARVKEKALGEEVLRGVHPGQQIVKIFHDELTALLGGDNEPLNLE- 96

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
             +P  I++VG+NG GKTT   KL+  +   G   +L A D  R AAI+QL   A +   
Sbjct: 97  --KPARIMMVGLNGAGKTTSSAKLAMWLKKQGKAPLLIACDLHRPAAIEQLATLARQVGV 154

Query: 168 DFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                  G  D   +   A   A+ +  +V I DTAGR   +  L+  I  +   L+   
Sbjct: 155 PCFTPPPGEKDVLKVGRLAADWAKEQPGNVQIYDTAGRQEIDEPLIQEIKALREFLQ--- 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  VL V DA TGQ A+     FH     TGL++TK+DG ARGG  + +    + P+
Sbjct: 212 ---PQEVLLVADAATGQQAVSVATHFHQALNITGLVLTKLDGDARGGAALSMRQVTQRPI 268

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G+GE ++  EPF     +  I G  D
Sbjct: 269 KFAGIGEKLDQFEPFFPDRLAGRILGMGD 297


>gi|328885329|emb|CCA58568.1| Signal recognition particle, subunit Ffh SRP54 [Streptomyces
           venezuelae ATCC 10712]
          Length = 517

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 144/288 (50%), Gaps = 16/288 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSE 90
           +S + +D   RE +   L+ +D+ + V +  ++ +  +    +VS      Q+V+  V++
Sbjct: 22  LSEQDIDSAARE-IRIALLEADVALPVVRAFIKNVKERSLGAEVSKALNPSQQVIKIVND 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  +L   ++   +  +  P VI++ G+ G GKTT+ GKL   +   G   +L A D  
Sbjct: 81  ELISILGGETRRLRFAKTA-PTVIMLAGLQGAGKTTLAGKLGLWLKSQGHSPLLVACDLQ 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           R  A++QL + ADR    F   + G+   D   +A ++ + A+ K  DV+I+DTAGRL  
Sbjct: 140 RPNAVNQLSVVADRAGVAFYGPQPGNGVGDPVQVAKDSIEHARTKLYDVVIVDTAGRLGI 199

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  LM      IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+D
Sbjct: 200 DQELMQQAAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLD 253

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G ARGG  + I       + F   GE ++D + F     ++ I G  D
Sbjct: 254 GDARGGAALSIAHVTGKQIMFASNGEKLDDFDAFHPDRMASRILGMGD 301


>gi|171683961|ref|XP_001906922.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941941|emb|CAP67593.1| unnamed protein product [Podospora anserina S mat+]
          Length = 646

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 139/281 (49%), Gaps = 33/281 (11%)

Query: 40  RLDDGVREELEDLLIRSDIGV-AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           RL +GV +EL  +   S   + A  QK +E  LTK      S+  +L ++  +       
Sbjct: 373 RLCEGVEKELVGVKTGSFESINARIQKAMEASLTKMLTPTSSLD-LLREIDAITSPSATS 431

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           L K        RP+V+ +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++QL
Sbjct: 432 LRK-------ARPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQL 484

Query: 159 KIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +   R   +    E           G DAA +A +A   A  +  +V++IDTAGR HN+
Sbjct: 485 AVHV-RNLKELTAREGGQVELYQKGYGKDAATVAKDAVAYAAQEGFNVVLIDTAGRRHND 543

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMT 264
             LM+ + K  +  +      P  +L V  A  G +++ Q   F+A  G+     G I++
Sbjct: 544 QRLMSSLEKFAKFAQ------PDKILMV--ALVGTDSVAQARNFNAAFGSGRSLDGFIIS 595

Query: 265 KMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           K D      G L+ IV    +PV F+GVG+  +DL  F  K
Sbjct: 596 KCDTVGDMVGTLVSIVHATNVPVLFVGVGQHYSDLRNFSVK 636


>gi|68468044|ref|XP_721861.1| hypothetical protein CaO19.3952 [Candida albicans SC5314]
 gi|46443803|gb|EAL03082.1| hypothetical protein CaO19.3952 [Candida albicans SC5314]
          Length = 535

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 145/289 (50%), Gaps = 33/289 (11%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMP-LS 100
           D V ++  + LI  +I   +A  I++++ TK  A K V++      +++ + K+L P +S
Sbjct: 245 DEVSKKFREQLITKNITPGIATTIIDKIKTKLSANKKVTMAVYKQALTDELTKILTPNVS 304

Query: 101 KPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
                    N + + RP+VI VVGVNGVGK+T + KL+       L V++ A DTFRS A
Sbjct: 305 TDLLHDIKRNAELNTRPYVISVVGVNGVGKSTNLAKLAFWFLQNNLNVLICACDTFRSGA 364

Query: 155 IDQLKIWAD------------RTSADFVCSEIGS--DAAALAYEAFKQAQAKKVDVLIID 200
           ++QLK+  +            ++  D      GS       A +A + A+  K D+++ID
Sbjct: 365 VEQLKVHVNNLNRLNEASTNTKSRIDIFEKGYGSGDHVVQTAKQAVQYAEENKFDIVLID 424

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGR H+N+ LMA + K        D   P+ ++ V +A  G +++ Q   F+   G   
Sbjct: 425 TAGRTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQATNFNKAFGNKR 478

Query: 261 ----LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                I++K+D      G +I +V+   +P+ F+G G+   D++    K
Sbjct: 479 TLDFFIISKVDTVGDLVGTMINMVMATNVPILFVGTGQTYTDIKRLSVK 527


>gi|260912277|ref|ZP_05918828.1| signal recognition particle protein Ffh [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260633578|gb|EEX51717.1| signal recognition particle protein Ffh [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 450

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 109/210 (51%), Gaps = 7/210 (3%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRT 165
             +RP +IL+ G+ G GKTT  GKL+  +     K  +L A D +R AAI+QLK+ A + 
Sbjct: 95  LKNRPAIILMSGLQGSGKTTFSGKLANLLKSKQHKNPLLVACDVYRPAAIEQLKVVAQQV 154

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                      +   +A  A ++A++K  DV+I+DTAGRL  +  +M  I ++ + L   
Sbjct: 155 GVSVYSEPDNKNVVEIANNAIREAKSKGNDVVIVDTAGRLAVDEEMMDEIYRLKQALN-- 212

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P   L V+D+ TGQ+A+     F+      G+++TK+DG  RGG  + I      P
Sbjct: 213 ----PDETLFVVDSMTGQDAVNTAREFNDRLDIDGVVLTKLDGDTRGGAALSIRTVVTKP 268

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G GE +  ++ F  +  +  I G  D
Sbjct: 269 IKFVGTGEKMEAIDVFHPERMADRILGMGD 298


>gi|168057840|ref|XP_001780920.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667633|gb|EDQ54258.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 633

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 18/202 (8%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+ I+ VGVNGVGK+T + K++  +    +KVM+AA DTFRS A++QL+  A R     
Sbjct: 425 RPYTIVFVGVNGVGKSTNLAKVAYWLQQHDIKVMMAACDTFRSGAVEQLRTHARRLQIPI 484

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D A +A +A  +A+  K DV+++DTAGR+ +N  LM  + K+I +      + 
Sbjct: 485 FERGYEKDPAVVARDAIYEAKRTKQDVVLVDTAGRMQDNEPLMRALSKLINM------ND 538

Query: 230 PHSVLQVLDATTGQNALRQVEMFH-----------AVAGTTGLIMTKMDG-TARGGGLIP 277
           P  VL V +A  G + + Q+  F+                 G+++TK D    + G  + 
Sbjct: 539 PDLVLFVGEALVGNDGVHQLTQFNQKLADLSSTSSQTQSIDGILLTKFDTIDDKVGAALS 598

Query: 278 IVVTHKIPVYFLGVGEGINDLE 299
           +V T   PV F+G G+   DL+
Sbjct: 599 MVYTSGAPVMFVGCGQNYTDLK 620


>gi|328787996|ref|XP_395013.3| PREDICTED: signal recognition particle receptor subunit alpha
           homolog isoform 1 [Apis mellifera]
          Length = 614

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 146/295 (49%), Gaps = 41/295 (13%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP- 98
           V ++L+D LI  ++   +A+K+ + +  K   K     D     V   +++ + ++L P 
Sbjct: 318 VLDKLKDHLISKNVAADIAKKLCDSVGVKLEGKILGTFDSVASTVKATLTDALVQILSPK 377

Query: 99  -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                L        +HRP+V+   GVNGVGK+T + K+   + +   +V++AA DTFR+ 
Sbjct: 378 RRVDILRDAMEAKNNHRPYVMTFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAG 437

Query: 154 AIDQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           A++QL+                +++         G DAA +A EA + A+  K+D++++D
Sbjct: 438 AVEQLRTHMRHLNALHPPEKHGNQSMVQLYEKGYGKDAAGIAMEAIRFAKDSKIDIVLVD 497

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259
           TAGR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ A+A  +
Sbjct: 498 TAGRMQDNEPLMRALAKLIKV------NEPDVVLFVGEALVGNEAVDQLVKFNQALADHS 551

Query: 260 ---------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                    G+++TK D    + G  I +      P+ F+G G+   DL+   AK
Sbjct: 552 QSSNPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAK 606


>gi|295102421|emb|CBK99966.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Faecalibacterium prausnitzii L2-6]
          Length = 451

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 135/274 (49%), Gaps = 14/274 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+   VA+    ++  +   ++V       Q+V+  V+E +  ++     P
Sbjct: 34  EVRMALLEADVNYKVAKDFCAKVSERAMGQEVMESLTPAQQVVKIVNEELVALMGGEEAP 93

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                +    +I++ G+ G GKTT   KL+K     G + ML A D +R AAIDQL++  
Sbjct: 94  RLVIKNKGQTIIMLCGLQGNGKTTHAAKLAKYYIKQGRRPMLVACDIYRPAAIDQLQVVG 153

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +  A  V +  G    A+A +A   A+    D++I+DTAGRL  + +LM       + L
Sbjct: 154 RQAGAP-VFTLPGEKPPAIAKKALAHAKDYGNDIIILDTAGRLQIDEVLM-------QEL 205

Query: 223 KRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            ++    P    L V+DA  GQ+A+   + F+   G  G+I+TK DG  RGG  + ++  
Sbjct: 206 VQIKEAVPVDETLLVVDAMAGQDAVNVAKTFNETVGIDGIILTKTDGDTRGGAALSVLSV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ F G GE ++DLE F     +  I G  D
Sbjct: 266 TGKPIKFQGTGEKLDDLEVFHPSRMAGRILGMGD 299


>gi|288928375|ref|ZP_06422222.1| signal recognition particle protein [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288331209|gb|EFC69793.1| signal recognition particle protein [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 450

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 110/210 (52%), Gaps = 7/210 (3%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRT 165
            ++RP +IL+ G+ G GKTT  GKL+  +     K  +L A D +R AAI+QL++ A + 
Sbjct: 95  LTNRPAIILMSGLQGSGKTTFSGKLANLLKGKQHKNPLLVACDVYRPAAIEQLRVVAQQV 154

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                      +   +A  A ++A+AK  DV+I+DTAGRL  +  +M  I ++ + L   
Sbjct: 155 GVPVYSEPDNKNVVEIANNAIREAKAKGNDVVIVDTAGRLAVDEEMMDEIYRLKQALN-- 212

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P   L V+D+ TGQ+A+     F+      G+++TK+DG  RGG  + I      P
Sbjct: 213 ----PDETLFVVDSMTGQDAVNTAREFNDRLDIDGVVLTKLDGDTRGGAALSIRTVVTKP 268

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G GE +  ++ F  +  +  I G  D
Sbjct: 269 IKFVGTGEKMEAIDVFHPERMADRILGMGD 298


>gi|47459362|ref|YP_016224.1| signal recognition particle GTPase [Mycoplasma mobile 163K]
 gi|47458692|gb|AAT28013.1| signal recognition particle GTPase [Mycoplasma mobile 163K]
          Length = 447

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 15/264 (5%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           +  E++  L+ +D+ + V ++ ++ +      T+   K    Q+V+  V E + K+    
Sbjct: 30  ITREIKLALLEADVNLIVVKEFIQNIKDQTIGTELIGKLNPGQQVIKIVKEELVKIFGNK 89

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQ 157
           +K  N   S +P + ++ G+ G GKTT I K++   K      K+++ AGD +R AAIDQ
Sbjct: 90  TKEIN--ISKKPTIFMIAGLQGGGKTTTIAKIAHFYKNKKKIEKILIVAGDIYRPAAIDQ 147

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L   +     D   + +         EA  +A+ +  D+++IDTAGRL  +  LM  + +
Sbjct: 148 LDTLSKMVGVDIYKNSVDIKPQQTVKEAIDKAKNEYYDLVLIDTAGRLSIDEKLMNELIE 207

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +  + K      P  ++ V DA +GQ+     + F      TG I+TK+D  ARGG  + 
Sbjct: 208 IKEIAK------PQEIIFVSDALSGQDIFNVAKTFDEKLKLTGSIITKLDSDARGGAALS 261

Query: 278 IVVTHKIPVYFLGVGEGINDLEPF 301
           I     IP+ F+G GE + +L+ F
Sbjct: 262 ITKMLNIPILFIGTGEKVTNLDLF 285


>gi|325914818|ref|ZP_08177153.1| signal recognition particle subunit FFH/SRP54 (srp54) [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325538909|gb|EGD10570.1| signal recognition particle subunit FFH/SRP54 (srp54) [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 446

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 137/275 (49%), Gaps = 22/275 (8%)

Query: 39  RRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           R  ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q ++  V +
Sbjct: 9   RLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKIVRD 68

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDT 149
            +  ++   +   N +    P +IL+ G+ G GKTT +GKL+K + +   K VM+ + D 
Sbjct: 69  ELTAVMGAAAADLNLNVPA-PAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADV 127

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI+QLK  A++    F  S+       +   A   A+    DVL++DTAGRL  + 
Sbjct: 128 YRPAAIEQLKTLAEQVGVLFFPSDASQKPVDIVRAAISDARKSFADVLLVDTAGRLAIDQ 187

Query: 210 ILMAGIGKMIRVLKRLDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +M  I  +         HA   P   L V+DA TGQ+A    + F      TG+++TK 
Sbjct: 188 AMMDEIKAL---------HAAVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKT 238

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           DG ARGG  + +      P+ F+G GE  + L+ F
Sbjct: 239 DGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVF 273


>gi|315282799|ref|ZP_07871124.1| signal recognition particle protein [Listeria marthii FSL S4-120]
 gi|313613554|gb|EFR87373.1| signal recognition particle protein [Listeria marthii FSL S4-120]
          Length = 450

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+ + +D +IIDTAGRLH +  LM  + ++  + K    
Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEIAK---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  LE F     ++ I G  D
Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300


>gi|82705448|ref|XP_726974.1| signal recognition particle protein SRP54 [Plasmodium yoelii yoelii
           str. 17XNL]
 gi|23482603|gb|EAA18539.1| signal recognition particle protein SRP54 [Plasmodium yoelii
           yoelii]
          Length = 500

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 138/285 (48%), Gaps = 20/285 (7%)

Query: 42  DDGVREE-LEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVL--YDVSE 90
           DD V EE L+++   LI +DI V +  K ++  + K   K+ +      +R++  Y V E
Sbjct: 24  DDNVIEECLKEIVRALILADINV-IYLKDIKSNIKKNIEKNAAAYGNNKKRLVQKYVVEE 82

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           LI K+L    + +      R +VIL VG+ G GKTT   K +      G K  L   DTF
Sbjct: 83  LI-KLLEGKKESYVPKKGER-NVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALICADTF 140

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+ A DQLK  A +    F  S    D   +A +        K D++I+D++GR    + 
Sbjct: 141 RAGAFDQLKQNAAKVKIPFYGSYSEVDPVKIATDGVNTFLKDKYDLIIVDSSGRHKQEND 200

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           L   + ++   +K      P  ++ V+D+  GQ+   Q   F        +I+TK+DG A
Sbjct: 201 LFEEMKQVENSIK------PEEIVFVIDSHIGQSCHDQAMAFKNSVKVGSIIITKIDGHA 254

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GGG +  V     P+ F+G GE +ND E F AK F + + G  D
Sbjct: 255 KGGGALSAVSAIGCPITFIGTGEHVNDFEKFEAKSFVSRLLGLGD 299


>gi|294673857|ref|YP_003574473.1| signal recognition particle protein [Prevotella ruminicola 23]
 gi|294474161|gb|ADE83550.1| signal recognition particle protein [Prevotella ruminicola 23]
          Length = 453

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT  GKL+K + +    K +L A D +R AAI+QLK+  +      
Sbjct: 102 PAIILMSGLQGSGKTTFSGKLAKMLKERNHKKPLLVACDVYRPAAIEQLKVVGETVGVPV 161

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  +   +A  A ++A++K  DV+IIDTAGRL  +  +M  I  + + +       
Sbjct: 162 YSEPDNKNVVEIANHAIQEAKSKANDVVIIDTAGRLAVDEEMMQEIETLKKAVN------ 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+  L V+D+ TGQ+A+   + F+      G+I+TK+DG  RGG  + I      P+ F+
Sbjct: 216 PNETLFVVDSMTGQDAVNTAKEFNDRLDFDGVILTKLDGDTRGGAALSIRTVVTKPIKFV 275

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE +  ++ F  +  +  I G  D
Sbjct: 276 GTGEKMEAIDVFYPERMADRILGMGD 301


>gi|291563269|emb|CBL42085.1| signal recognition particle protein [butyrate-producing bacterium
           SS3/4]
          Length = 454

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 155/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++    RL +  V+  L+++   L+ +D+   V ++ +  +  +   
Sbjct: 3   FESLADKLQNVFKNLRGKGRLTEADVKAALKEVKMALLEADVSFKVVKQFISSVQERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +        +   VI+++G+ G GKTT   KL
Sbjct: 63  QDVLESLTPGQMVIKIVNEELVKLMGSETTEIALKPQNEITVIMMIGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G K +LAA D +R AAI QL++  ++            +   +A  A + A+ 
Sbjct: 123 AGKFKAKGRKPLLAACDVYRPAAIKQLQVNGEKVGVPVFTMGDNQNPVNIAKAAVEHARK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + ++++ +DTAGRL  +  +M    +++ + + ++     ++L V+DA TGQ+A+     
Sbjct: 183 EGMNLVFLDTAGRLQIDESMM---DELVNIKEAVE--IDQTIL-VVDAMTGQDAVNVAGS 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I 
Sbjct: 237 FNDKIGVDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|312194948|ref|YP_004015009.1| signal recognition particle protein [Frankia sp. EuI1c]
 gi|311226284|gb|ADP79139.1| signal recognition particle protein [Frankia sp. EuI1c]
          Length = 519

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 133/282 (47%), Gaps = 17/282 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--- 99
           D    E+   L+ +D+ + V +  V  +  K  A+ V V + L    ++I  +   L   
Sbjct: 28  DATAREIRVALLEADVALPVVRAFVAAI--KERARGVEVSQALNPAQQVIKIVNEELIGI 85

Query: 100 --SKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              +  N   +  P  VIL+ G+ G GKTT+ GKL   +   G   ML A D  R  A++
Sbjct: 86  LGGQTANIRLAKTPPTVILLAGLQGTGKTTLAGKLGMWLKKQGHTPMLVAADLQRPNAVN 145

Query: 157 QLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           QL++   R   +    E G+   D  A+A +A   A+    DV+++DTAGRL  +  LM 
Sbjct: 146 QLQVVGARAGVEVFAPEPGNGIGDPVAVARDAIAHARRNVFDVVVVDTAGRLGVDQELME 205

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
               +   +K      P  +L V+DA  GQ+A+     F    G +G+++TK+DG ARGG
Sbjct: 206 QAADIRDAVK------PDEILFVVDAMVGQDAVSTAMAFLDGVGFSGVVLTKLDGDARGG 259

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + +      P+ F   GE + D + F  +  ++ I G  D
Sbjct: 260 AALSVAHVTGRPIMFASTGEALGDFDVFHPERMASRILGMGD 301


>gi|242086847|ref|XP_002439256.1| hypothetical protein SORBIDRAFT_09g003220 [Sorghum bicolor]
 gi|241944541|gb|EES17686.1| hypothetical protein SORBIDRAFT_09g003220 [Sorghum bicolor]
          Length = 588

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 148/310 (47%), Gaps = 30/310 (9%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT----- 72
           TKG+ S+  +   G   +I    L   ++  L+D L+  ++   +A+K+ E +       
Sbjct: 278 TKGWFSSVFQSIAGGNSVIERSDLQPALKA-LKDRLMTKNVAEEIAEKLCESVAASLEGK 336

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           K+ +   +   V   +   + ++L P      L        S RP+VI+ VGVNGVGK+T
Sbjct: 337 KQGSFTSTASTVQAAMEAALVRILTPSRSIDVLRDVHAAKDSGRPYVIVFVGVNGVGKST 396

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            + K++  +    L V LAA DTFRS A++QL+  A R            D A +A +A 
Sbjct: 397 NLAKVAYWLLQHDLTVTLAACDTFRSGAVEQLRTHARRLQIPVFEKGYQRDPAVVAKQAI 456

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A   + DV+++DTAGR+ +N  LM  + K+I V      ++P  VL V +A  G +A+
Sbjct: 457 EEAARSRSDVVLVDTAGRMQDNEPLMRALSKLIAV------NSPDLVLFVGEALVGNDAV 510

Query: 247 RQVEMFHAVAGT-----------TGLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEG 294
            Q+  FH                 G++++K D    + G  + +V     PV F+G G+ 
Sbjct: 511 DQLTQFHQKLADLSPVHVEKRLIDGILLSKFDTVDDKVGAALSMVYVSGAPVMFVGCGQS 570

Query: 295 INDLEPFVAK 304
             DL+    K
Sbjct: 571 YTDLKKLNVK 580


>gi|167571288|ref|ZP_02364162.1| signal recognition particle protein [Burkholderia oklahomensis
           C6786]
          Length = 455

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVL++DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSTPDQKPVDIANAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEITALHAALK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PVETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEIFHPDRMANRILGMGD 303


>gi|153875262|ref|ZP_02003141.1| truncated signal recognition particle protein [Beggiatoa sp. PS]
 gi|152068274|gb|EDN66859.1| truncated signal recognition particle protein [Beggiatoa sp. PS]
          Length = 322

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 96/173 (55%), Gaps = 6/173 (3%)

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ML + D +R AAI QL+  A++  A F  S+       +A  A +QA+ + +DVL++DTA
Sbjct: 1   MLVSCDIYRPAAIKQLETLAEQVGAKFFPSDPTQKPVDIASAAIEQARNQFIDVLLVDTA 60

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH +  +M  I ++    +      P   L V+D+ TGQ+A +  + F+     TG+I
Sbjct: 61  GRLHIDDEMMDEIKELHGATQ------PTETLFVVDSMTGQDAAKTAKAFNDALPLTGVI 114

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +TK DG ARGG  + +      P+ FLG+GE IN LEPF     ++ I G  D
Sbjct: 115 LTKTDGDARGGAALSVRHLTGKPIKFLGIGEKINALEPFYPDRLASRIIGQGD 167


>gi|260591562|ref|ZP_05857020.1| signal recognition particle protein [Prevotella veroralis F0319]
 gi|260536593|gb|EEX19210.1| signal recognition particle protein [Prevotella veroralis F0319]
          Length = 451

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 135/265 (50%), Gaps = 15/265 (5%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL- 99
           V E L+D+   L+ +D+   VA+   + +  K    +V +  +    + +++H  L  L 
Sbjct: 27  VAETLKDVRRALLDADVNYKVAKSFTDTVKQKALGMNVLTAVKPGQLMVKIVHDELAELM 86

Query: 100 -SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQ 157
             +    + ++RP +IL+ G+ G GKTT  GKL+  +     K  +L A D +R AAIDQ
Sbjct: 87  GGEAVGLNLTNRPAIILMSGLQGSGKTTFSGKLANMLKTKEHKNPLLVACDVYRPAAIDQ 146

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LK+  ++            +   +A  A  +A+AK  DV+IIDTAGRL  +        +
Sbjct: 147 LKVVGEQVGVPVYSELENKNVNEIADHALAEAKAKGCDVVIIDTAGRLAVDE-------E 199

Query: 218 MIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           M+  ++ L  H  P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 200 MMNEIESLKNHVNPDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I      P+ F+G GE +  ++ F
Sbjct: 260 SIRTVVTKPIKFIGTGEKMEAIDVF 284


>gi|86133270|ref|ZP_01051852.1| signal recognition 54 kDa protein (SRP54) [Polaribacter sp. MED152]
 gi|85820133|gb|EAQ41280.1| signal recognition 54 kDa protein (SRP54) [Polaribacter sp. MED152]
          Length = 442

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 145/276 (52%), Gaps = 16/276 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSK 101
           +E+   L+ +D+   +A++  +++ T+   +DV       Q ++  V + + K++   + 
Sbjct: 32  KEVRRALLDADVNFKIAKEFTKKVQTEAIGQDVLTTLNPGQLMVKLVKDELTKLMGGETV 91

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKI 160
             N   S  P VIL+ G+ G GKTT  GKL+  + +    +V+L   D +R AAI+QL++
Sbjct: 92  GVNLGGS--PTVILMSGLQGSGKTTFSGKLANYLKTKKSKQVLLVGCDVYRPAAINQLQV 149

Query: 161 WADRTSADFVCSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             ++   + V +E+G++    ++  A K A+A   +V+IIDTAGRL  +  +M  I  + 
Sbjct: 150 VGEQIGVE-VYAEVGNNNPVEISQNAIKHAKANGKNVVIIDTAGRLAVDQEMMTEISNIH 208

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           + +       P   L V+D+ TGQ+A+   + F+ +    G+++TK+DG  RGG  + I 
Sbjct: 209 KAI------TPQETLFVVDSMTGQDAVNTAKAFNDILNFDGVVLTKLDGDTRGGAALSIK 262

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                P+ F+G GE +  ++ F     +  I G  D
Sbjct: 263 SVVNKPIKFIGTGEKMEAIDVFYPDRMADRILGMGD 298


>gi|153810624|ref|ZP_01963292.1| hypothetical protein RUMOBE_01008 [Ruminococcus obeum ATCC 29174]
 gi|149833020|gb|EDM88102.1| hypothetical protein RUMOBE_01008 [Ruminococcus obeum ATCC 29174]
          Length = 211

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 123/199 (61%), Gaps = 10/199 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL- 70
           + ++L  G   T   +  G   I S    +D+   EELE++LI  DIG+     I+E L 
Sbjct: 8   FFKRLVSGLTKTRDNIVAGFDSIFSGYSSIDEDFYEELEEILIMGDIGINATSAIIEHLK 67

Query: 71  --LTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             + +++ K+ +  +++L  ++ +  +M +  ++   ++F +R  VILV+GVNGVGKTT 
Sbjct: 68  EQVAEKHIKNPMECKQLL--INSIKEQMRVDSTE---YEFENRKSVILVIGVNGVGKTTS 122

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +GKL+ K+ D G KV+LAA DTFR+AA +QL  WA+R   D +  + G+D A++ Y+A  
Sbjct: 123 VGKLAGKLKDQGKKVILAAADTFRAAAGEQLAQWANRAGVDLIGGQEGADPASIVYDAVA 182

Query: 188 QAQAKKVDVLIIDTAGRLH 206
            A+A+  DVLI DTAGRLH
Sbjct: 183 AAKARNADVLICDTAGRLH 201


>gi|171057067|ref|YP_001789416.1| signal recognition particle protein [Leptothrix cholodnii SP-6]
 gi|170774512|gb|ACB32651.1| signal recognition particle protein [Leptothrix cholodnii SP-6]
          Length = 455

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 106/209 (50%), Gaps = 13/209 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT   KL+K + +    KV+  + D +R AAI+QLK    +  A++
Sbjct: 100 PAVILMAGLQGAGKTTTTAKLAKHLIERRKKKVLTVSADVYRPAAIEQLKTVTRQAGAEW 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S+       +A  A   A+    DVL++DTAGRL  +  LMA I          D HA
Sbjct: 160 FPSQGDQKPRDIALAAIDYARKHHFDVLLVDTAGRLAIDEALMAEIK---------DLHA 210

Query: 230 ---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+     F      TG+++TK+DG +RGG  + +      P+
Sbjct: 211 TLTPIETLFVVDAMQGQDAINTARAFKEALPLTGIVLTKLDGDSRGGAALSVRSITGAPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GV E I+ LE F A   +  + G  D
Sbjct: 271 KFAGVSEKIDGLEVFDADRHAGRVLGMGD 299


>gi|119960504|ref|YP_948184.1| signal recognition particle protein [Arthrobacter aurescens TC1]
 gi|119947363|gb|ABM06274.1| signal recognition particle protein [Arthrobacter aurescens TC1]
          Length = 526

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 151/316 (47%), Gaps = 28/316 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V+V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLTEADVDATVREIRRALLDADVAVSVVREFTGRIRERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E + ++L   ++      +  P +I++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPSQQIVKIVNEELKEILGGETRRIRLAKTG-PTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---------DAAALA 182
           SK +   G   ML A D  R  A+ QL++   R          G+         D  A+A
Sbjct: 121 SKWLKAQGHSPMLVACDLQRPNAVTQLQVVGQRAGVPVFAPHPGATSELEHPAGDPVAVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
               ++A+ K  DV+I+DTAGRL  ++ +M    ++ + +       P+ VL V+D+  G
Sbjct: 181 KAGVEEARQKLHDVVIVDTAGRLGVDAEMMDQARRIRQAI------IPNEVLFVIDSMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+     F      TG++++K+DG ARGG  + +      PV F   GEG++D E F 
Sbjct: 235 QDAVNTAMAFDEGVNFTGIVLSKLDGDARGGAALSVASVTGKPVMFASTGEGLDDFELFH 294

Query: 303 AKDFSAVITGCLDYGE 318
               ++ I   LD G+
Sbjct: 295 PDRMASRI---LDMGD 307


>gi|290974685|ref|XP_002670075.1| signal recognition particle receptor alpha subunit family protein
           [Naegleria gruberi]
 gi|284083630|gb|EFC37331.1| signal recognition particle receptor alpha subunit family protein
           [Naegleria gruberi]
          Length = 678

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 142/284 (50%), Gaps = 34/284 (11%)

Query: 43  DGVREELEDLLIR----SDIGVAVAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLM 97
           D V E+ +  L++     +I V++   + E L+ K+     S++  V   + E + ++L 
Sbjct: 387 DPVMEDFKQSLMKKNVAQEIAVSICDSVSENLVGKKLGTFSSIKSEVTKAMEEALTRILT 446

Query: 98  P------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           P      L +        RP+VI++ GVNGVGK+T + K+   +       ++AA DTFR
Sbjct: 447 PSRTINILKEASTVREQGRPYVIVMCGVNGVGKSTTLSKICYWLLQKEFSCLIAACDTFR 506

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           S A++QL++ A   +        G +AA+LA EA   A+    D++++DTAGR+ +N  L
Sbjct: 507 SGAVEQLQVHARCLNVPVFQKGYGKNAASLAKEAINHAKKNGFDIVLVDTAGRMQDNEPL 566

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV---------AGTT--- 259
           M  + ++I+V      + P  VL V +A  G + + Q++ F++          A T    
Sbjct: 567 MKSLIELIQV------NTPDLVLFVGEALVGNDGIDQLQKFNSSLKVLASSENAATKQTK 620

Query: 260 ----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
               G+++TK D    + G  + +V     P+ F+GVG+   DL
Sbjct: 621 DLIDGIVLTKFDTIDEKVGAAVSMVHKTGHPIVFVGVGQTYTDL 664


>gi|167564167|ref|ZP_02357083.1| signal recognition particle protein [Burkholderia oklahomensis
           EO147]
          Length = 455

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVL++DTAGRL  +  +M  I  +   LK      
Sbjct: 164 FPSTPEQKPVDIANAAVDWAKRHYHDVLLVDTAGRLGIDEAMMQEITALHAALK------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PVETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEIFHPDRMANRILGMGD 303


>gi|68072141|ref|XP_677984.1| signal recognition particle receptor alpha subunit, [Plasmodium
           berghei strain ANKA]
 gi|56498300|emb|CAH97107.1| signal recognition particle receptor alpha subunit, putative
           [Plasmodium berghei]
          Length = 546

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 150/292 (51%), Gaps = 35/292 (11%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-DVSVQRVLYDV 88
           E I   I ++ L   V  E+ D+LI         +++ E+L+ K+     ++V++ +  +
Sbjct: 260 EKILQEIKTKLLSKNVASEICDILI---------ERMKEKLIGKKKTMFSLNVKKTVSTI 310

Query: 89  -SELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-L 140
            S+ +  +L+P      L          + + I  +GVNGVGK+T + K+   +   G L
Sbjct: 311 FSDTLQSILIPKDSVDVLRSALEAKSLGKLYSICFLGVNGVGKSTNLAKVCYYLKTKGNL 370

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K+M+AA DTFR+ AI+QL+I A            G +AAA+A +A   A+ +K DV++ID
Sbjct: 371 KIMIAACDTFRAGAIEQLRIHAKCLDVYLFEKGYGKNAAAIAKDAISYAKKEKYDVILID 430

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-----AV 255
           TAGR+ +N  LM  +GK+I +      + P  +L V +A  G +A+ Q++ F+     A 
Sbjct: 431 TAGRMQDNEPLMRSLGKLILI------NNPDLILFVGEALVGNDAIDQLKKFNQTLIDAT 484

Query: 256 AGT-----TGLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             T      G+++TK D    + G  + +V     P+ F+GVG+    L+ F
Sbjct: 485 CDTHKRTIDGILLTKFDTVDDKVGTALSMVYLTGRPIVFVGVGQKYTHLKKF 536


>gi|304392576|ref|ZP_07374516.1| signal recognition particle protein [Ahrensia sp. R2A130]
 gi|303295206|gb|EFL89566.1| signal recognition particle protein [Ahrensia sp. R2A130]
          Length = 511

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 140/274 (51%), Gaps = 13/274 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPL--SKPF 103
           E+   LI +D+ + V ++  E++  K     V V+ V     V +++H  L+ +  ++  
Sbjct: 33  EIRRALIEADVALEVVREFTEKVREKAVGASV-VKSVTPGQMVVKIVHDELVAMLGTEDE 91

Query: 104 NWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIW 161
             D  +  P  I++VG+ G GKTT  GK++ ++     K V++A+ DT R AA +QL+  
Sbjct: 92  RIDLNAPSPVGIMMVGLQGSGKTTTSGKIALRLKTRDRKKVLMASLDTRRPAAQEQLRQL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +T  D +    G +  A+A  A +  +    DV+I+DTAGR   +  LMA +   IR 
Sbjct: 152 GVQTEVDTLPIVEGQEPVAIANRAMQAGKLGGYDVVILDTAGRTSIDEPLMAEMAD-IR- 209

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                   PH +L V D+ TGQ+A+   + F    G TGL++T++DG  RGG  + +   
Sbjct: 210 ----SAANPHEILLVADSLTGQDAVNLAQNFDTRVGITGLVLTRIDGDGRGGAALSMRAV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+  LG GE ++ LE F  K  +  I G  D
Sbjct: 266 TGKPIKLLGTGEKMDALEDFYPKRIADRILGMGD 299


>gi|297191798|ref|ZP_06909196.1| signal recognition particle [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151070|gb|EFH30942.1| signal recognition particle [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 517

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 141/281 (50%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           DG   E+   L+ +D+ + V ++ ++++  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DGAAREIRIALLEADVALPVVREFIKQVKARSLGSEVSKALNPSQQVIKIVNEELIGILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P VI++ G+ G GKTT+ GKL   +   G   +L A D  R  A++Q
Sbjct: 88  GETRRLRFAKTP-PTVIMLAGLQGAGKTTLAGKLGLWLKSQGHSPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+ K  D++I+DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEYARTKVHDIVIVDTAGRLGIDQELMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +       + F   GE ++D + F     ++ I G  D
Sbjct: 261 ALSVAHVTGKQIMFASNGEKLDDFDAFHPDRMASRILGMGD 301


>gi|328952468|ref|YP_004369802.1| signal recognition particle protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328452792|gb|AEB08621.1| signal recognition particle protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 445

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 111/205 (54%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P  +++VG+ G GKTT   KL+  +   G + +LA  DT R AAI+QL         D  
Sbjct: 100 PVALMLVGLQGSGKTTTAAKLALYLKKQGRQPLLAPVDTQRPAAIEQLHRLGAEIGVDVY 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S+   +  ALA EA   A AK  DVL++DTAGRLH ++ LMA +  +   +       P
Sbjct: 160 RSQPQQNPVALASEAMAAAVAKGHDVLLLDTAGRLHVDAPLMAELQAIKADV------GP 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V DA TGQ+A+   + FH     TG+I+TK++G ARGG  + +      P+ FLG
Sbjct: 214 AEILLVADAMTGQDAVAVAQNFHEALDLTGVILTKVEGDARGGAALSMRTVVNKPIKFLG 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           VGE ++ LE F     ++ I G  D
Sbjct: 274 VGEKLDALEVFHPDRLASRILGMGD 298


>gi|255723319|ref|XP_002546593.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240130724|gb|EER30287.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 539

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 145/285 (50%), Gaps = 31/285 (10%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMP-LSKP 102
           V ++  D L+  +I    +++I+E++  K    K V++      +++ + K+L P +S  
Sbjct: 253 VSKQFNDQLMSKNIAPGTSKQIIEKIKNKLSGNKKVTMSMYKQALTDELTKILTPNVSTD 312

Query: 103 F------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
                  N + + RP+VI VVGVNGVGK+T + KL+  +      V++ A DTFRS A++
Sbjct: 313 LLHDIKRNAETNTRPYVISVVGVNGVGKSTNLAKLAYWLLQNNFNVLICACDTFRSGAVE 372

Query: 157 QLKIWA---DRTSADFVCSEI---------GSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           QLK+     +R + +   S+I         G      A +A + A   K D+++IDTAGR
Sbjct: 373 QLKVHVNNLNRLNENSENSKIDLFEKGYGSGDHVVQTAKQAIQYATDHKFDIVLIDTAGR 432

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG---- 260
            H+N+ LMA + K        D   P+ ++ V +A  G +++ Q   F+   G       
Sbjct: 433 THSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQAINFNNAFGNKRSLDF 486

Query: 261 LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            I++K+D      G +I +V+  K+P+ F+G G+   D++    K
Sbjct: 487 FIISKVDTVGDLVGTMINMVMATKVPILFVGTGQTYTDIKRLSVK 531


>gi|327404872|ref|YP_004345710.1| signal recognition particle subunit FFH/SRP54 (srp54) [Fluviicola
           taffensis DSM 16823]
 gi|327320380|gb|AEA44872.1| signal recognition particle subunit FFH/SRP54 (srp54) [Fluviicola
           taffensis DSM 16823]
          Length = 449

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+  + +    K +L A D +R AAIDQL +  ++   + 
Sbjct: 99  PGVILMSGLQGSGKTTFSGKLANYLQTKKNKKPLLVACDVYRPAAIDQLHVLGEQLGIEV 158

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             ++   D   +A +A   A++K  +V+I+DTAGRL  +  +M  I ++ + +       
Sbjct: 159 YSNKEEKDPVKIATDAVIYARSKGFNVVIVDTAGRLAVDEAMMDEIARVKKAIN------ 212

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I      P+ F+
Sbjct: 213 PTETLFVVDSMTGQDAVNTAKAFNDRINFDGVVLTKLDGDTRGGAALSIKSIVDKPIKFV 272

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE ++ L+ F  K  +  I G  D
Sbjct: 273 GTGEKMDALDVFYPKRMADRILGMGD 298


>gi|185178783|ref|ZP_02964582.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           5 str. ATCC 27817]
 gi|188518703|ref|ZP_03004129.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|188524136|ref|ZP_03004209.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195867445|ref|ZP_03079449.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
 gi|198273576|ref|ZP_03206112.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|225550943|ref|ZP_03771892.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
 gi|225551584|ref|ZP_03772530.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|184209401|gb|EDU06444.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           5 str. ATCC 27817]
 gi|188997693|gb|EDU66790.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|195659739|gb|EDX53119.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195660921|gb|EDX54174.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
 gi|198250096|gb|EDY74876.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|225379399|gb|EEH01764.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|225380097|gb|EEH02459.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
          Length = 448

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 156/310 (50%), Gaps = 35/310 (11%)

Query: 28  LKEGITDIIS---SRRLDDGV--REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
            K  I +I+S   S++L +     E++++LL  S+I +A+    V  L+ K++ K++  +
Sbjct: 2   FKAMIGNIVSKQMSKKLKNATIAEEDIKELL--SEIRIALLDADVNLLVVKKFIKNIKEK 59

Query: 83  RV-LY--------DV------SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            + LY        DV       EL+  +L   +KP N   S     I++VG+ G GKTT 
Sbjct: 60  TIGLYVEQNQKPADVVLKVIKDELVE-ILGKENKPVNTAKSQLK--IMMVGLQGSGKTTT 116

Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE-A 185
            GKL+    +    K +L A D +R AAIDQL+  A +   DF   E G+    L  + A
Sbjct: 117 AGKLANYFRNKYNKKPLLVAADIYRPAAIDQLRTLAKQVRVDFW--EEGTQRPDLTVKNA 174

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +A   + +++I+DTAGRL  N  LM    +++ V K L+P     V  V+DA  GQ+ 
Sbjct: 175 LHKADENENNLVIVDTAGRLQTNEELMQ---ELVNVKKTLNPD---EVFLVVDAMAGQDI 228

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +     F+     TG+I+TK+D  AR G ++ +     +P+ F G GE I  ++ F  + 
Sbjct: 229 INVATEFNNWLKLTGIIVTKLDSDARAGAVLSLTSLLNVPIKFTGTGEKIGSIDSFYPER 288

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 289 MADRILGLGD 298


>gi|84498340|ref|ZP_00997137.1| signal recognition particle protein [Janibacter sp. HTCC2649]
 gi|84381840|gb|EAP97723.1| signal recognition particle protein [Janibacter sp. HTCC2649]
          Length = 536

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 154/325 (47%), Gaps = 37/325 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++ +  RL +  V + + D+   L+ +D+ + V ++    +  +   
Sbjct: 2   FTSLSDRLTATFKNLRTKGRLSESDVNKTVRDIRMALLDADVALPVVKEFTSAVRERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++   +  +  P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQSLNPAQQIVKIVNEELVDILGGQTRTIRFAKTG-PTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------- 176
           ++ + D G   +L A D  R  A+ QL++  +R        E G+               
Sbjct: 121 ARWLKDQGHTPILVAADLQRPNAVTQLQVVGERAGVPVFAPEQGNVGGHDAVGGTGEGTR 180

Query: 177 ---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D   ++ +  ++A  K  DV+I+DTAGRL  ++ LM   G +   +       P+ V
Sbjct: 181 SFGDPVTVSRDGIREAVNKHHDVVIVDTAGRLAVDADLMKQAGDIRAAIN------PNEV 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+DA  GQ A+   E F      TG++++K+DG ARGG  + +      P+ F   GE
Sbjct: 235 LFVIDAMIGQAAVETAEAFLEGVDFTGVVLSKLDGDARGGAALSVAKVTGRPIMFASTGE 294

Query: 294 GINDLEPFVAKDFSAVITGCLDYGE 318
           G+ D E F     ++ I   LD G+
Sbjct: 295 GVKDFEVFHPDRMASRI---LDMGD 316


>gi|78776651|ref|YP_392966.1| Signal recognition particle protein [Sulfurimonas denitrificans DSM
           1251]
 gi|78497191|gb|ABB43731.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sulfurimonas
           denitrificans DSM 1251]
          Length = 447

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 148/293 (50%), Gaps = 36/293 (12%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELL------TKRY 75
           L +  T+ I   R +D  +      +EL+  L+R+D    V  K+V++L+      TK+ 
Sbjct: 5   LTDSFTNAIKKIRFNDDDKALTKALDELKKSLLRAD----VNHKVVKDLIFKVQIETKKN 60

Query: 76  A--KDV---SVQRVLYDVSELI-HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              KD    +++  LY++ E+  ++  +  SKP        P VIL+ G+ G GKTT   
Sbjct: 61  GIGKDQFLEALRNALYELLEIGGNRGFVFASKP--------PTVILMTGLQGSGKTTTTA 112

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+  + +   KVM+ A D  R AA++QL+    +   +    E   +   +   A K+A
Sbjct: 113 KLANYLKNKQKKVMVVAADLQRLAAVEQLRQLTQQVGVELYEDESTKNPVEVVTAALKKA 172

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            +   DV++IDTAGRL  ++ LM      +  +K      P  +  V D+ TGQ+A++  
Sbjct: 173 NSGIYDVVLIDTAGRLAIDNELM----DELEAVKY--AANPSEIFYVADSMTGQDAIKTA 226

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
             F    G  G+I++K DG ++GG  + +    ++P+ F+G GE I DLE F+
Sbjct: 227 TAFKEKIGIDGVILSKYDGDSKGGIALGLSSQVQVPLRFIGSGEKIEDLEVFL 279


>gi|116618655|ref|YP_819026.1| signal recognition particle subunit FFH/SRP54 (srp54) [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097502|gb|ABJ62653.1| signal recognition particle subunit FFH/SRP54 (srp54) [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 491

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 147/307 (47%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + I ++    R+ ++ +R  + ++   L+ +D+     +K V  +  K   
Sbjct: 3   FENLTERLSKAIKNLTGHGRVSEEDLRATMREIRLALLEADVNYDTVKKFVANVREKASG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            D+       Q+++  V++ +   +   + P N      P +I++ G+ G GKTT + KL
Sbjct: 63  TDIMEGLNPAQQIVKIVNDELTATMGEEAVPLNKS-PKIPTIIMMAGLQGAGKTTTVAKL 121

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQ 188
           + K+ ++   + +L A D +R AAIDQL+I       D     +G+D     +     ++
Sbjct: 122 AYKLKNENNARPLLIAADIYRPAAIDQLEILG--RDLDIPVFSMGTDVNPRDIVRAGLEK 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A   K D + IDTAGRL  +  LM  +  +  +        P  +L  +DA TGQNA   
Sbjct: 180 AAENKNDYVFIDTAGRLQIDEELMQELKDIAEIAD------PDEILLTVDAMTGQNAAET 233

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F A    TG+++TK+DG  RGG  + I      P+ F+G GE   DL+ F     ++
Sbjct: 234 AKGFSASLDLTGVVLTKLDGDTRGGAALSIRDVTGKPIKFVGQGEKPTDLDVFYPDRMAS 293

Query: 309 VITGCLD 315
            I G  D
Sbjct: 294 RILGMGD 300


>gi|313889472|ref|ZP_07823120.1| signal recognition particle protein [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313122304|gb|EFR45395.1| signal recognition particle protein [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 517

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 156/308 (50%), Gaps = 23/308 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L+    +I   R+L +     V +E+   L+ +D+ + V +  ++++  +   
Sbjct: 3   FESLTERLQGVFKNIRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKQVRERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
            ++       Q+++  V+E +  +L   S+    + + + P +I++VG+ G GKTT  GK
Sbjct: 63  HEIIDTLDPTQQIVKIVNEELTDILG--SETATIEKAPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFK 187
           L+ K+  +   + ++ A D +R AAIDQLK    + +      ++G+D  A  +  +   
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDYPAVEIVRQGLT 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+  + D ++IDTAGRL  +  LM  +    R +K L    P+ +L V+D+  GQ A  
Sbjct: 179 LARENRNDYVLIDTAGRLQIDEKLMTEL----RDVKAL--ANPNEILLVVDSMIGQEAAN 232

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F     S
Sbjct: 233 VADEFNKQLEITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHPDRMS 292

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 293 SRILGMGD 300


>gi|254559237|ref|YP_003066332.1| signal recognition particle protein, GTPase [Methylobacterium
           extorquens DM4]
 gi|254266515|emb|CAX22279.1| signal recognition particle protein, GTPase [Methylobacterium
           extorquens DM4]
          Length = 520

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  IL+VG+ G GKTT   K++++++     +V+LA+ DT R AA++QL + A +   + 
Sbjct: 100 PVAILMVGLQGSGKTTTTAKIARRLNQRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVES 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G  A  +A  A + A+    DV+++DTAGR   +  LM    ++    K      
Sbjct: 160 LPIVAGQSAVQIAKRAMEAARLGGFDVVMLDTAGRTTVDEGLMNEAAEVKAATK------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V DA TGQ+A+     F    G TG+++T+MDG +RGG  + +      P+  +
Sbjct: 214 PHEVLLVADALTGQDAVNTARAFDERLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLV 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE ++ LE F     +  I G  D
Sbjct: 274 GVGEKVDALEEFHPHRVANRILGMGD 299


>gi|159036836|ref|YP_001536089.1| signal recognition particle protein [Salinispora arenicola CNS-205]
 gi|157915671|gb|ABV97098.1| signal recognition particle protein [Salinispora arenicola CNS-205]
          Length = 514

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+++  V+E +  +L 
Sbjct: 28  DATAREIRLALLEADVALPVVKGFIARVKERARGAEVSQALNPAQQIIKIVNEELINVLG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              +   +     P VI++ G+ G GKTT+ GKL+  +   G + +L A D  R  A+ Q
Sbjct: 88  GEGRRLQF-AKQPPTVIMLAGLQGSGKTTLAGKLASWLRGQGHQPLLVAADLQRPNAVGQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++   R   +    E G+   D   +A  + + A+    D++I+DTAGRL  ++ +M  
Sbjct: 147 LQVLGGRAGVEVYAPEPGNGVGDPVQVAQASIEHARRAARDIVIVDTAGRLGIDAEMMRQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D   P  V+ V+DA  GQ+A+R  E F    G TG++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVDPDEVIFVIDAMVGQDAVRTAEAFRDGVGITGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F   GE + D + F     ++ I G  D
Sbjct: 261 ALSVREVTGQPILFASTGEKLEDFDVFHPDRMASRILGMGD 301


>gi|118468367|ref|YP_886770.1| signal recognition particle protein [Mycobacterium smegmatis str.
           MC2 155]
 gi|118169654|gb|ABK70550.1| signal recognition particle protein [Mycobacterium smegmatis str.
           MC2 155]
          Length = 522

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 146/317 (46%), Gaps = 29/317 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFVARIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKIVNEELIGILGGETRQLAFAKTP-PTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA------ 185
           +K + D G   +L A D  R  A++QL+I  +R          G+   A   E       
Sbjct: 121 AKWLKDKGHSPLLVACDLQRPGAVNQLQIVGERAGVAVFAPHPGTAPGAHETEGAGPGDP 180

Query: 186 -------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                    +A+ K   V+I+DTAGRL  + +LMA     IR     D   P   L VLD
Sbjct: 181 VAVAAAGLAEAKTKLYGVVIVDTAGRLGIDDVLMAQAAG-IR-----DAVQPDETLFVLD 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+   E F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D 
Sbjct: 235 AMIGQDAVATAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASAGEKLEDF 294

Query: 299 EPFVAKDFSAVITGCLD 315
           + F     ++ I G  D
Sbjct: 295 DVFHPDRMASRILGMGD 311


>gi|325287087|ref|YP_004262877.1| signal recognition particle protein [Cellulophaga lytica DSM 7489]
 gi|324322541|gb|ADY30006.1| signal recognition particle protein [Cellulophaga lytica DSM 7489]
          Length = 446

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADR 164
           + S  P VIL+ G+ G GKTT  GKL+  +     K  +L A D +R AAIDQL +  D+
Sbjct: 94  NLSGTPSVILMSGLQGSGKTTFSGKLANYLKTKKTKKPLLVACDVYRPAAIDQLHVVGDQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +       ++  A+A      A+A   +V+IIDTAGRL  +  +M  I  + + +  
Sbjct: 154 IGVEVFSDRGNTNPVAIAEAGIAHAKANGHNVVIIDTAGRLAVDEEMMTEIANVHKAIN- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+D+ TGQ+A+   + F+ V    G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDVLNFDGVILTKLDGDTRGGAAISIKSVVTK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE ++ ++ F     +  I G  D
Sbjct: 268 PIKFIGTGEKMDAIDVFHPSRMAERILGMGD 298


>gi|283852121|ref|ZP_06369395.1| signal recognition particle protein [Desulfovibrio sp. FW1012B]
 gi|283572511|gb|EFC20497.1| signal recognition particle protein [Desulfovibrio sp. FW1012B]
          Length = 496

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 128/267 (47%), Gaps = 10/267 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPL--SKPFNWDFSH 109
           L+ +D+   V +  VE +  +   +DV         V +++H+ ++ L   +    D   
Sbjct: 38  LLEADVNFKVVKDFVERVRERAMGQDVLKSLTPGQQVVKIVHEEMIELLGGQAQELDLKA 97

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            P VI+VVG+ G GKTT   KL+ K+  +   K  L   D +R AAIDQL   A +    
Sbjct: 98  SPAVIMVVGLQGSGKTTTCAKLALKLRREFKRKPYLVPADVYRPAAIDQLHKLASQLDIP 157

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
              S    +   +   A ++A+    DV+++DTAGRLH +  LM  +  +          
Sbjct: 158 AFPSTPDQNPVDICLAALEEARRSGHDVVLLDTAGRLHIDQTLMDELAAIKAGTN----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +L V DA TGQ+A+     F+     +G+++TKMDG ARGG  + +       + F
Sbjct: 213 -PGEILFVADAMTGQDAVTVAAAFNERLDVSGIVLTKMDGDARGGAALSVRQVTGKAIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE + DLE F     ++ I G  D
Sbjct: 272 VGTGEKVADLEVFHPDRAASRILGMGD 298


>gi|76800703|ref|YP_325711.1| signal recognition particle 54K protein [Natronomonas pharaonis DSM
           2160]
 gi|121718419|sp|Q3IUP1|SRP54_NATPD RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|76556568|emb|CAI48139.1| signal recognition particle 54K protein [Natronomonas pharaonis DSM
           2160]
          Length = 466

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 101/204 (49%), Gaps = 8/204 (3%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
             I++ G+ G GKTT   K++   S  GL+  +   DTFR  A DQ K   +R   DF  
Sbjct: 98  QTIVLAGLQGSGKTTTAAKMAWWFSKKGLRPAVIQTDTFRPGAYDQAKEMCERAEVDFYG 157

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +    D   +A    ++      DV I+DTAGR   +++  A I ++  +   +DP    
Sbjct: 158 NPDSDDPVEIAERGLEET--ADADVHIVDTAGR---HALEEALIDELEAIESAVDPD--- 209

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L VLDA  GQ A  Q E FH   G  G+ +TK+DGTA+GGG +  V      + FLG 
Sbjct: 210 RNLLVLDAAIGQGAKDQAERFHDAVGIDGVAITKLDGTAKGGGALAAVDQTDSSIAFLGT 269

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE + D+E F    F + + G  D
Sbjct: 270 GEEVKDIERFEPSGFISRLLGMGD 293


>gi|188024387|ref|ZP_02997051.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           7 str. ATCC 27819]
 gi|188018655|gb|EDU56695.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           7 str. ATCC 27819]
          Length = 448

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 156/310 (50%), Gaps = 35/310 (11%)

Query: 28  LKEGITDIIS---SRRLDDGV--REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
            K  I +I+S   S++L +     E++++LL  S+I +A+    V  L+ K++ K++  +
Sbjct: 2   FKAMIGNIVSKQMSKKLKNATIAEEDIKELL--SEIRIALLDADVNLLVVKKFIKNIKEK 59

Query: 83  RV-LY--------DV------SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            + LY        DV       EL+  +L   +KP N   S     I++VG+ G GKTT 
Sbjct: 60  TIGLYVEQNQKPADVVLKVIKDELVE-ILGKENKPVNTAKSQLK--IMMVGLQGSGKTTT 116

Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE-A 185
            GKL+    +    K +L A D +R AAIDQL+  A +   DF   E G+    L  + A
Sbjct: 117 AGKLANYFRNKYNKKPLLVAADIYRPAAIDQLRTLAKQVRVDFW--EEGAQRPDLTVKNA 174

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +A   + +++I+DTAGRL  N  LM    +++ V K L+P     V  V+DA  GQ+ 
Sbjct: 175 LHKADENENNLVIVDTAGRLQTNEELMQ---ELVNVKKTLNPD---EVFLVVDAMAGQDI 228

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +     F+     TG+I+TK+D  AR G ++ +     +P+ F G GE I  ++ F  + 
Sbjct: 229 INVATEFNNWLKLTGIIVTKLDSDARAGAVLSLTSLLNVPIKFTGTGEKIGSIDSFYPER 288

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 289 MADRILGLGD 298


>gi|305663445|ref|YP_003859733.1| GTP-binding signal recognition particle SRP54 G- domain
           [Ignisphaera aggregans DSM 17230]
 gi|304378014|gb|ADM27853.1| GTP-binding signal recognition particle SRP54 G- domain
           [Ignisphaera aggregans DSM 17230]
          Length = 453

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 134/282 (47%), Gaps = 26/282 (9%)

Query: 47  EELEDLLIRSDIGV----AVAQKIVEELLTKRYAKDVSVQ----RVLYD-VSELIHKMLM 97
           +EL+  L+R+D+ V     + + I E  L +R    +S Q    +++YD +S L    + 
Sbjct: 30  KELQKTLLRADVNVKLVLELTKNIRERALKERPPPYISKQEWFIKIVYDELSSLFGGDIK 89

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P   P        P++I++VGV G GKTT   K++      G +  L   DT+R AA +Q
Sbjct: 90  PQVFPVK-----TPYIIMLVGVQGSGKTTTAAKIAYFYKRYGYRPCLICTDTYRPAAYEQ 144

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L   + +    F      SD   +A +          +++IIDTAGR         G G+
Sbjct: 145 LYQLSKQIDVPFCGDPKSSDPIDIAKKCLSYCINNNTNIIIIDTAGR--------HGYGE 196

Query: 218 MIRVLKRLDPHA----PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              +LK +   A    P  V+ ++DA+ GQ A      FH+      +++TK+DGTA+GG
Sbjct: 197 EEYLLKEMQDIAKAVNPDEVMLIIDASIGQKAYDLALRFHSATPIGSIVITKLDGTAKGG 256

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +  V   K  + F+G GE I +LE F  + F   I G  D
Sbjct: 257 GALSAVAATKAIIKFIGTGEKIPELEVFDPRRFVGRILGLGD 298


>gi|222151070|ref|YP_002560224.1| signal recognition particle protein [Macrococcus caseolyticus
           JCSC5402]
 gi|222120193|dbj|BAH17528.1| signal recognition particle protein [Macrococcus caseolyticus
           JCSC5402]
          Length = 450

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  M      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVACDIYRPAAIQQLQTVGKQI--DI 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +   A + A+ + +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 159 PVFTLGDQVSPKEITERALQHAKEEHLDFVIIDTAGRLHIDEALMNELVEVKEI------ 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  ++ V+D+ TGQ+A+   E F      TG+ +TK+DG  RGG  + I    + P+ 
Sbjct: 213 SQPDEIMLVVDSMTGQDAVNVAESFDNQLDITGVTLTKLDGDTRGGAALSIRSVTQKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G+ E ++ LEPF  +  ++ I G  D
Sbjct: 273 FVGMSEKLDGLEPFHPERMASRILGMGD 300


>gi|171920811|ref|ZP_02695409.2| signal recognition particle protein [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|171903576|gb|EDT49865.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
          Length = 448

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 156/310 (50%), Gaps = 35/310 (11%)

Query: 28  LKEGITDIIS---SRRLDDGV--REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
            K  I +I+S   S++L +     E++++LL  S+I +A+    V  L+ K++ K++  +
Sbjct: 2   FKAMIGNIVSKQMSKKLKNATIAEEDIKELL--SEIRIALLDADVNLLVVKKFIKNIKEK 59

Query: 83  RV-LY--------DV------SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            + LY        DV       EL+  +L   +KP N   S     I++VG+ G GKTT 
Sbjct: 60  TIGLYVEQNQKPADVVLKVIKDELVE-ILGKENKPVNTAKSQLK--IMMVGLQGSGKTTT 116

Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE-A 185
            GKL+    +    K +L A D +R AAIDQL+  A +   DF   E G+    L  + A
Sbjct: 117 AGKLANYFRNKYNKKPLLVAADIYRPAAIDQLRTLAKQVRVDFW--EEGTQRPDLTVKNA 174

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +A   + +++I+DTAGRL  N  LM    +++ V K L+P     V  V+DA  GQ+ 
Sbjct: 175 LHKADENENNLVIVDTAGRLQTNEELMQ---ELVNVKKTLNPD---EVFLVVDAMAGQDI 228

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +     F+     TG+I+TK+D  AR G ++ +     +P+ F G GE I  ++ F  + 
Sbjct: 229 INVATEFNNWLKLTGIIVTKLDSDARAGAVLSLTSLLNVPIKFTGTGEKIGSIDSFYPER 288

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 289 MADRILGLGD 298


>gi|11094805|gb|AAG29734.1|AC084414_2 signal recognition particle 54 kDa protein 2 (SRP54), putative
           [Arabidopsis thaliana]
          Length = 522

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 145/317 (45%), Gaps = 46/317 (14%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQ-------KIVE-ELLTKRYAKDVSVQRVLY 86
           II  + L++ + E +   L++SD+   + +       KIV  E L   + K   +++ ++
Sbjct: 22  IIDEKALNECLNE-ITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             SEL  KML P  KP       +  V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  --SELC-KMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVC 136

Query: 147 GDTFRSAAIDQLKIWA----------------------DRTSAD--FVCSEIG---SDAA 179
            DTFR+ A DQLK  A                       RTS    F+C  I    SD  
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGRFGLGQYLHISGLKRTSVTYMFLCPIIHYTESDPV 196

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +A E     + +  D++I+DT+GR    + L   + ++    K      P  V+ V+D+
Sbjct: 197 KIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATK------PDLVIFVMDS 250

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQ A  Q + F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E
Sbjct: 251 SIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFE 310

Query: 300 PFVAKDFSAVITGCLDY 316
            F  K F + + G  D+
Sbjct: 311 VFDVKPFVSRLLGMGDW 327


>gi|325661102|ref|ZP_08149729.1| signal recognition particle protein [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085169|ref|ZP_08334255.1| signal recognition particle protein [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472609|gb|EGC75820.1| signal recognition particle protein [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330407952|gb|EGG87442.1| signal recognition particle protein [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 449

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++ S  RL ++ V+  L ++   L+ +D+   V +  V+++  +   
Sbjct: 3   FDSLTEKLQNVFKNLRSKGRLTEEDVKLALREVKMALLEADVNFKVVKGFVKDVQERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + +++   +            VI++ G+ G GKTT   K+
Sbjct: 63  QDVMNGLNPGQMVIKIVNEELIRLMGSETTEIQLQPGQATTVIMMAGLQGAGKTTTTAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G K +L A D +R AAI QL++  ++   +            +A  A + A  
Sbjct: 123 AGKLKLKGKKPLLVACDVYRPAAIKQLQVNGEKQGVEVFSMGENHKPVNIAKAAMEHAAK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVE 250
              +V+I+DTAGRLH +        +M+  L+ +  H   H  + V+DA TGQ+A+    
Sbjct: 183 NGNNVVILDTAGRLHIDE-------EMMEELQEIKEHVEVHQTILVVDAMTGQDAVNVAN 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 DFNQKIGIDGVIVTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|238009706|gb|ACR35888.1| unknown [Zea mays]
          Length = 351

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 89/173 (51%), Gaps = 6/173 (3%)

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ML A D +R AAIDQL I   +           +  + +A    K+A+  K DV+I+DTA
Sbjct: 1   MLVAADVYRPAAIDQLTILGKKVGVPVYSEGTEAKPSQIAKNGLKEAKVNKADVIIVDTA 60

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL  +  +M  + ++ + +       P  VL V+DA TGQ A   V  F+   G TG I
Sbjct: 61  GRLQVDKAMMNELKEVKKAVN------PTEVLLVVDAMTGQEAAGLVSSFNDEIGITGAI 114

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +TK+DG +RGG  + +      P+ F+G GE I DLEPF     +  I G  D
Sbjct: 115 LTKLDGDSRGGAALSVKEVSGKPIKFVGQGERIEDLEPFYPDRMAQRILGMGD 167


>gi|260220058|emb|CBA27216.1| Signal recognition particle protein [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 395

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 107/209 (51%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT  GKL+K + +    KV+  +GD +R AAI+QLK    +  
Sbjct: 38  AQPPAVILMSGLQGAGKTTTTGKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAG 97

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S    +   +   A   A+    DVL++DTAGRL  +  LM+ I  +   L    
Sbjct: 98  AEWFPSTPDQNPVDIGRAALDYAKKHFFDVLLVDTAGRLAIDEALMSEIKNLHAALN--- 154

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+I+TK DG +RGG  + +      P+
Sbjct: 155 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIILTKTDGDSRGGAALSVRQITGAPI 211

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G  E ++ LE F A+  +  I G  D
Sbjct: 212 KFAGTSEKLDGLEVFDAERHAGRILGMGD 240


>gi|170741843|ref|YP_001770498.1| signal recognition particle protein [Methylobacterium sp. 4-46]
 gi|168196117|gb|ACA18064.1| signal recognition particle protein [Methylobacterium sp. 4-46]
          Length = 526

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 142/274 (51%), Gaps = 13/274 (4%)

Query: 48  ELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V     +K+ E+ +     K V+  Q V+  V++ +  ML   ++ 
Sbjct: 33  EVRRALLEADVALEVVRDFTEKVREQAVGATVLKSVTPGQMVVKIVNDQLVAMLGAEAEI 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIW 161
            + + +  P  IL+VG+ G GKTT   K++++++     +V++A+ DT R AA++QL + 
Sbjct: 93  IDLN-APSPVAILMVGLQGSGKTTTTAKIARRLNGREKRRVLMASLDTRRPAAMEQLAVL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +   + +    G  A  +A  A + A+    DV+++DTAGR+  +  LM    + ++ 
Sbjct: 152 GKQVGVETLPIVAGQSAVQIAKRAMEAARLGGFDVVMLDTAGRITLDEALMQEAAE-VKA 210

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
             R     PH VL V DA TGQ+A+     F    G TG+++T+MDG ARGG  + +   
Sbjct: 211 AAR-----PHEVLLVADALTGQDAVNTARAFDQRLGVTGIVLTRMDGDARGGAALSMRAV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+  +G GE ++ LE F     +  I G  D
Sbjct: 266 TGKPIKLVGTGEKVDALEEFHPARVANRILGMGD 299


>gi|317125420|ref|YP_004099532.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Intrasporangium calvum DSM 43043]
 gi|315589508|gb|ADU48805.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Intrasporangium calvum DSM 43043]
          Length = 540

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 149/308 (48%), Gaps = 34/308 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L     ++    RL +  V + + D+   L+ +D+ + V ++    +  +   
Sbjct: 2   FATLSDRLTATFKNLRGKGRLSESDVNKAVRDIRLALLDADVALPVVKRFTTAVRERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT  GKL
Sbjct: 62  EEVNQALNPAQQVVKIVNEELVTILGGETRQIRF-AKNPPTVIMLAGLQGSGKTTFAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------- 176
            + + D G   +L A D  R  A+ QL++  +R        E G+               
Sbjct: 121 GRWLKDRGHTPLLVAADLQRPNAVTQLEVVGERAGLKVFAPERGNVGGHDAVAGTGEGTR 180

Query: 177 ---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D  +++    + A+A++ DV+I+DTAGRL  ++ LM     +   ++      P  V
Sbjct: 181 SFGDPVSVSRAGVEHARAQQHDVVIVDTAGRLAVDTNLMQQAADIRSAIQ------PDEV 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+DA  GQ A+   + FH     TG++++K+DG ARGG  + I      P+ F  VGE
Sbjct: 235 LFVIDAMIGQAAVETAQAFHEGVAFTGVVLSKLDGDARGGAALSIREVTGEPIMFASVGE 294

Query: 294 GINDLEPF 301
            + D+E F
Sbjct: 295 KVTDIEVF 302


>gi|257063724|ref|YP_003143396.1| signal recognition particle subunit FFH/SRP54 (srp54) [Slackia
           heliotrinireducens DSM 20476]
 gi|256791377|gb|ACV22047.1| signal recognition particle subunit FFH/SRP54 (srp54) [Slackia
           heliotrinireducens DSM 20476]
          Length = 478

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 141/305 (46%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+   + +    RL +D +   + ++   L+ +D+   V ++   +  TK+  
Sbjct: 2   FESLSDRLQNIFSGLRGKGRLTEDDINSAMREIRMALLEADVNFKVVKQFTAD--TKQRC 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVILVVGVNGVGKTTVIGK 130
            +  V   L     ++  +L  L+K    +       S  P+VI++VG+ G GKTT   K
Sbjct: 60  LEAEVLESLTPAQNVVKIVLDELTKLLGENDAKLNTSSRIPNVIMLVGLQGSGKTTAAAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G   +L AGD +R AA DQL+             + G D   +A +  + A 
Sbjct: 120 LAYLLKGKGHVPLLVAGDVYRPAAADQLETLGGEIGVKVFRGD-GKDPVQIAKDGVRYAI 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRLH +  +M     +   +K      P  +L V+DA TGQ+ +    
Sbjct: 179 DNLRDVVIVDTAGRLHVDEQMMDEAAAIKEAVK------PEEILMVVDAMTGQDVVNVAS 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F       G+IM+KMDG ARGGG + +      P+ F+  GE  + LE F     +  I
Sbjct: 233 AFAEKVEFDGVIMSKMDGDARGGGALSLKQVTGKPIKFISAGEKPDSLEEFHPDRMAKRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|295836296|ref|ZP_06823229.1| signal recognition particle protein [Streptomyces sp. SPB74]
 gi|295825941|gb|EDY44271.2| signal recognition particle protein [Streptomyces sp. SPB74]
          Length = 513

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 136/267 (50%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++++  +   ++VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIKKIKERALGEEVSKALNPAQQVIKIVNEELVGILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL + +   G   +L A D  R  A++Q
Sbjct: 88  GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLQGQGHSPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        + G+   D   +A ++ + A+ K+ DV+I+DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVGIYAPQPGNGVGDPVQVAKDSVEYARTKQYDVVIVDTAGRLGIDQELMRQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I       + F   GE +++ + F
Sbjct: 261 ALSIAHVTGKQIMFASNGEKLDEFDAF 287


>gi|320527196|ref|ZP_08028382.1| signal recognition particle protein [Solobacterium moorei F0204]
 gi|320132387|gb|EFW24931.1| signal recognition particle protein [Solobacterium moorei F0204]
          Length = 471

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L + + ++     L D   E    E+   L+ +D+   + ++ ++E+ TK   
Sbjct: 3   FDSLSDRLNKALRNVAGKGTLTDNNMEDMLKEVRLALLEADVNYRIVKEFLDEIRTKSRG 62

Query: 77  KDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V  SV   Q+++  V + I ++L       N+        I++VG+ G GKTT + K+
Sbjct: 63  EEVLQSVEPGQQLVKIVHDQIIELLGTEETGLNF-VEDGITKIMLVGLQGTGKTTSVAKI 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++   +    KV+L A D  R AAIDQL+        +       + A     +  + A+
Sbjct: 122 ARICKEKFNKKVLLIAADVIRPAAIDQLQTLGKEIDTEVFTLGTETPAVETVRQGMEYAE 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D + IDTAGRLH +  LM  +  +  ++       P+ +L  +DA TGQ+ +   +
Sbjct: 182 KNGFDTVFIDTAGRLHIDEALMNELKDINELVH------PNDILLTVDAMTGQDIVNVAQ 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TGL++TK DG +RGGG++ +     +P+ F+G GE I D++ F     +  I
Sbjct: 236 AFKDALPLTGLVVTKFDGDSRGGGVLSVKKITGVPIKFVGEGEKIEDMDIFHPDRMADRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|55379689|ref|YP_137539.1| signal recognition 54 kDa protein [Haloarcula marismortui ATCC
           43049]
 gi|74552458|sp|Q5UY20|SRP54_HALMA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|55232414|gb|AAV47833.1| signal recognition 54 kDa protein [Haloarcula marismortui ATCC
           43049]
          Length = 469

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 11/281 (3%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHK 94
           +S   ++D V+E ++  L+++D+ V + Q +   + T+   ++        D V  ++++
Sbjct: 23  LSEEDIEDIVKE-IQRSLLQADVDVGLVQDLSNSIETRALDEEPPAGTTPRDWVLRIVYE 81

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            L+ L    + +       I++ G+ G GKTT   K++   S  GL+  +   DT R  A
Sbjct: 82  ELVDLVGE-STELPLEEQTIMLAGLYGSGKTTTAAKMAWWFSTKGLRPAIIQTDTDRPGA 140

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            DQ K  A+R   DF       D   +A +  +  +    DV I+DTAGR   N  L+  
Sbjct: 141 YDQSKEMAERAEVDFYGDPDEDDPVKIARDGLEATE--NADVRIVDTAGRDGLNEELIEQ 198

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           I ++ + ++      P   L VLDA  GQ+A  Q   F A  G  G+++TK+DGTA+GGG
Sbjct: 199 IERIEQEVQ------PDRDLLVLDAAMGQSAKSQAADFEAAIGIDGVVITKLDGTAKGGG 252

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +  V      + FLG GE + D+E F    F + + G  D
Sbjct: 253 ALAAVNETDSTIAFLGSGETVKDIERFEPSGFISRLLGMGD 293


>gi|154245411|ref|YP_001416369.1| signal recognition particle protein [Xanthobacter autotrophicus
           Py2]
 gi|154159496|gb|ABS66712.1| signal recognition particle protein [Xanthobacter autotrophicus
           Py2]
          Length = 513

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  IL+VG+ G GKTT   K++K++++ G  KV++A+ DT R AA++QL     +     
Sbjct: 100 PVPILMVGLQGSGKTTSTAKIAKRLTERGKRKVLMASLDTRRPAAMEQLATLGKQVEVAT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G  A  +A  A + A+    DV+++DTAGR+  +  LMA + ++           
Sbjct: 160 LPIVAGQSAVQIAKRAIEAAKLGGYDVVMLDTAGRVTLDEALMAEVAEVKAA------TG 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V D+ TGQ+A+   + F    G TG+++T+ DG  RGG  + +      P+  L
Sbjct: 214 PHEVLLVADSLTGQDAVNTAKAFDGRVGLTGIVLTRADGDGRGGAALSMRAVTGKPIKLL 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE ++ LE F     +  I G  D
Sbjct: 274 GTGEKMDALEDFDPHRVAGRILGMGD 299


>gi|148284448|ref|YP_001248538.1| signal recognition particle protein [Orientia tsutsugamushi str.
           Boryong]
 gi|146739887|emb|CAM79851.1| signal recognition particle protein [Orientia tsutsugamushi str.
           Boryong]
          Length = 450

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 135/268 (50%), Gaps = 15/268 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  +  ++ K   ++V  SV   Q V+  +S+ + K+L           
Sbjct: 38  LLEADVSLVVIKDFINNVVEKAKGQEVIRSVTPGQMVIKIISDEMIKVLSSSETEQALRI 97

Query: 108 SHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P V I+++G+ G GKTT   KL+ K++    KVM+ + D +R AA +QL+    R  
Sbjct: 98  EFEPPVNIMMIGLQGSGKTTTTAKLAMKLAKKNKKVMVVSLDIYRPAAREQLETLV-RNH 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +   I S+       A    +AK +  DV+I DTAGRLH +  ++  +  +  ++  
Sbjct: 157 ETILSLPIVSNENVFQIIARSTKEAKLLGCDVVIYDTAGRLHIDETMLQELSNIKEII-- 214

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  +L V+D+  GQ ++     F+     +G+++TK+DG +RGG  + I      
Sbjct: 215 ----TPKEILLVVDSLIGQESVNVANQFNQTLNISGVVLTKIDGDSRGGAALSIKYVTGK 270

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITG 312
           P+ FLG+GE  NDLE F  +  ++ I G
Sbjct: 271 PIKFLGIGEKTNDLEEFHPERIASRILG 298


>gi|257440277|ref|ZP_05616032.1| signal recognition particle protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257197311|gb|EEU95595.1| signal recognition particle protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 451

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 136/274 (49%), Gaps = 14/274 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+   VA+    ++  +   ++V       Q+V+  V+E +  ++     P
Sbjct: 34  EVRMALLEADVNYKVAKDFCAKVSERAMGQEVMESLTPAQQVVKIVNEELVALMGGEEAP 93

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                +    +I++ G+ G GKTT   KL+K     G + ML A D +R AAIDQL++  
Sbjct: 94  RLIVKNKGQTIIMLCGLQGNGKTTHAAKLAKYFIKQGRRPMLVACDIYRPAAIDQLQVVG 153

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +  A  V +  G+    +A +A   A+    D++I+DTAGRL  + +LM       + L
Sbjct: 154 GQAGAP-VFTLPGAKPPEIARKALAHARDYGNDIVILDTAGRLQIDEVLM-------QEL 205

Query: 223 KRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            ++    P    L V+DA  GQ+A+   + F+   G  G+I+TK DG  RGG  + ++  
Sbjct: 206 VQIKEAVPVDETLLVVDAMAGQDAVNVAKTFNETVGIDGIILTKTDGDTRGGAALSVLSV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ F G GE ++DLE F     ++ I G  D
Sbjct: 266 TGKPIKFQGTGEKLDDLEVFHPSRMASRILGMGD 299


>gi|227432057|ref|ZP_03914071.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227352174|gb|EEJ42386.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 491

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 129/271 (47%), Gaps = 17/271 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+     +K V  +  K    D+       Q+++  V++ +   +   + P N   
Sbjct: 39  LLEADVNYDTVKKFVANVREKASGTDIMEGLNPAQQIVKIVNDELTATMGEEAVPLNKS- 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P +I++ G+ G GKTT + KL+ K+ ++   + +L A D +R AAIDQL+I      
Sbjct: 98  PKIPTIIMMAGLQGAGKTTTVAKLAYKLKNENNARPLLIAADIYRPAAIDQLEILG--RD 155

Query: 167 ADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            D     +G+D     +     ++A   K D + IDTAGRL  +  LM  +  +  +   
Sbjct: 156 LDIPVFSMGTDVNPRDIVRAGLEKAAENKNDYVFIDTAGRLQIDEELMQELKDIAEIAD- 214

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  +L  +DA TGQNA    + F A    TG+++TK+DG  RGG  + I      
Sbjct: 215 -----PDEILLTVDAMTGQNAAETAKGFSASLDLTGVVLTKLDGDTRGGAALSIRDVTGK 269

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE   DL+ F     ++ I G  D
Sbjct: 270 PIKFVGQGEKPTDLDVFYPDRMASRILGMGD 300


>gi|134891|sp|P06625|SRPR_CANFA RecName: Full=Signal recognition particle receptor subunit alpha;
           Short=SR-alpha; AltName: Full=Docking protein alpha;
           Short=DP-alpha
 gi|997|emb|CAA26945.1| signal recognition particle receptor [Canis sp.]
 gi|224778|prf||1112224A signal recognition particle receptor
          Length = 638

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 152/323 (47%), Gaps = 42/323 (13%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           TKG       + +G+    S  R D + V +++ D LI  ++   +A ++ E +  K   
Sbjct: 313 TKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 372

Query: 77  KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125
           K + +   V   V + + + L+ + +P           +     RP+V+   GVNGVGK+
Sbjct: 373 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKS 432

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172
           T + K+S  + + G  V++AA DTFR+ A++ ++    R SA                  
Sbjct: 433 TNLAKISFWLLENGFSVLIAACDTFRAGAVEHVRTHTRRLSALHPPEKHAGPTMVQLFEK 492

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  
Sbjct: 493 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 546

Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMDG-TARGGGLIPIVVT 281
           VL V +A  G  A+ Q+  F      H++A T     G+++TK D    + G  I +   
Sbjct: 547 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYI 606

Query: 282 HKIPVYFLGVGEGINDLEPFVAK 304
              P+ F+G G+   DL    AK
Sbjct: 607 TSKPIVFVGTGQTYCDLRSLNAK 629


>gi|297156880|gb|ADI06592.1| signal recognition particle protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 518

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 140/284 (49%), Gaps = 21/284 (7%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++++  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIKQIKERATGAEVSQALNPAQQVIKIVNEELVGILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL + +   G   +L A D  R  A++Q
Sbjct: 88  GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKGQGHAPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM-- 212
           L + A+R        E G+   D   +A ++ + A+ K+ DV+I+DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVAVFAPEPGNGVGDPVKVAEDSIEFAKTKQHDVVIVDTAGRLGIDQELMQQ 206

Query: 213 -AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
            A I   +R         P  VL V+D+  GQ+A+   E F    G  G++++K+DG AR
Sbjct: 207 AADIRDAVR---------PDEVLFVVDSMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDAR 257

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG  + I       + F   GE ++D + F     ++ I G  D
Sbjct: 258 GGAALSIAHVTGRQIMFASNGEKLDDFDAFHPDRMASRILGMGD 301


>gi|229495294|ref|ZP_04389029.1| signal recognition particle protein [Porphyromonas endodontalis
           ATCC 35406]
 gi|229317737|gb|EEN83635.1| signal recognition particle protein [Porphyromonas endodontalis
           ATCC 35406]
          Length = 442

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 147/303 (48%), Gaps = 14/303 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+    ++    R+ +  V E L+D+   L+ +D+   VA+K  + +      
Sbjct: 2   FENLSERLERSFKNLKGEGRITEINVAETLKDVRRALLDADVNYNVAKKFTDTVKETALG 61

Query: 77  KDV-SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           ++V +  R    + +++H  L  L   +         P V+L+ G+ G GKTT  GKL+K
Sbjct: 62  RNVLTAVRPSEMMVKIVHDELARLMGGEAVELRLQGSPAVVLMSGLQGSGKTTFSGKLAK 121

Query: 134 KMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +     K  +L A D +R AAIDQLK+  ++ +      E       +A      A+  
Sbjct: 122 LLKTQRHKNPLLVACDVYRPAAIDQLKVLGEQLNIPVYAEEDNKKPVQIAERGITYAREH 181

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV+I+DTAGRL  +  +M  I  +   +       P  VL V+D+ TGQ+A+   + F
Sbjct: 182 GHDVVIVDTAGRLAVDEEMMQEIAAIKAAIN------PDEVLFVVDSMTGQDAVNTAKEF 235

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +      G+++TK+DG  RGG  + I      P+ F+G GEG++ L+ F  +  +  I G
Sbjct: 236 NDRLDFGGVVLTKLDGDTRGGAALSIRTVVTKPIKFVGTGEGMDALDVFHPERMADRILG 295

Query: 313 CLD 315
             D
Sbjct: 296 MGD 298


>gi|12230633|sp|P70722|SRP54_ACIAM RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|4165432|emb|CAA69991.1| fifty-four homologue of SRP54 [Acidianus ambivalens]
          Length = 451

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 151/322 (46%), Gaps = 38/322 (11%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV----AVA 63
           S+ L  +R   + F + S    + + D I          +EL+  LI +D+ V    ++ 
Sbjct: 1   SKLLDNLRDAVRKFLTGSSSYDKAVEDFI----------KELQKSLISADVNVKLVFSLT 50

Query: 64  QKIVEELLTKRYAKDVSVQ----RVLYDVSELIHKMLMPLSKPFNWDFSHR------PHV 113
            KI E L  ++    +  +    +++YD           LS  F  D   +      P+V
Sbjct: 51  NKIKERLKNEKPPTYIERREWFIKIVYD----------ELSNLFGGDKEPKVIPDKIPYV 100

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I++VGV G GKTT  GKL+      G KV L   D +R AA++QL+    +         
Sbjct: 101 IMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEP 160

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              DA  +A    ++  ++K++++I+DTAGR H      A + +M  + + +    P  V
Sbjct: 161 GEKDAVGIAKRGVEKFLSEKMEIIIVDTAGR-HGYGEEAALLEEMKNIYEAI---KPDEV 216

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             V+DA+ GQ A      F+  +    +I+TKMDGTA+GGG +  V      + F+G GE
Sbjct: 217 TLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGE 276

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
            I++LE F  + F A I G  D
Sbjct: 277 KIDELEVFNPRRFVARILGMGD 298


>gi|304383803|ref|ZP_07366261.1| signal recognition particle protein [Prevotella marshii DSM 16973]
 gi|304335059|gb|EFM01331.1| signal recognition particle protein [Prevotella marshii DSM 16973]
          Length = 452

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADR 164
           +  +RP +IL+ G+ G GKTT  GKL+  +     +  +L A D +R AAI+QL++   +
Sbjct: 94  NLKNRPAIILMSGLQGSGKTTFSGKLANLLKTKQHRHPLLVACDVYRPAAIEQLRVVGTQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +        D   +A  A + A+AK  D ++IDTAGRL  +  +M+ I  + + +  
Sbjct: 154 IGVEVYSEPDSKDVVEIAQHAIQHAKAKSYDTVVIDTAGRLAVDEEMMSEIATLKKAV-- 211

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+DA TGQ+A+   + F+      G+++TK+DG  RGG  + I      
Sbjct: 212 ----TPDETLFVVDAMTGQDAVNTAKEFNDRLNFDGVVLTKLDGDTRGGAALSIRTVVTK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +  ++ F     +  I G  D
Sbjct: 268 PIKFIGTGEKMEAIDVFHPDRMADRILGMGD 298


>gi|193662214|ref|XP_001947029.1| PREDICTED: signal recognition particle receptor subunit alpha
           homolog [Acyrthosiphon pisum]
          Length = 627

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 147/297 (49%), Gaps = 41/297 (13%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDV-SELIHKMLMPLS 100
           D V E+L++ L+  ++ + +A K+ + + +K   K + S + V   V + +I  ++  LS
Sbjct: 329 DPVLEKLKEHLVAKNVAIEIATKLCDSVSSKLEGKVLGSFESVASTVKNTMIESLVQILS 388

Query: 101 KPFNWDF---------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                D          + +P+V+   GVNGVGK+T + K+   + +  L+V++AA DTFR
Sbjct: 389 PKRRIDILRDAMMAKKNEKPYVMAFCGVNGVGKSTNLAKICFWLIENNLRVLIAACDTFR 448

Query: 152 SAAIDQLKIWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           + A++QL+                D+          G DAA +A EA   A+  K D+++
Sbjct: 449 AGAVEQLRTHTKHLNALHPAKKHNDQQMVQLYEKGYGKDAAGIAMEAINHAKEAKYDIVL 508

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAG 257
           +DTAGR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ A+A 
Sbjct: 509 VDTAGRMQDNEPLMRALTKLIKV------NEPDMVLFVGEALVGNEAVDQLVKFNQALAD 562

Query: 258 TT---------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            +         G+++TK D    + G  I +      P+ F+G G+   DL+   AK
Sbjct: 563 YSSSVTPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAK 619


>gi|126662097|ref|ZP_01733096.1| signal recognition particle protein [Flavobacteria bacterium BAL38]
 gi|126625476|gb|EAZ96165.1| signal recognition particle protein [Flavobacteria bacterium BAL38]
          Length = 448

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 108/211 (51%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           + S  P VIL+ G+ G GKTT  GKL+  + +    K +L A D +R AAI+QL +   +
Sbjct: 94  NLSGNPTVILMSGLQGSGKTTFSGKLANFLKTKKNKKPLLVACDIYRPAAINQLHVVGGQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +        +   +A  A K A+A   +V+I+DTAGRL  +  +M  I ++ + ++ 
Sbjct: 154 IGVEVYSEPENKNPVEIAQNAIKHAKANGFNVVIVDTAGRLAVDEQMMNEIAEVHKAIQ- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+DA TGQ+A+   + F+      G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PEETLFVVDAMTGQDAVNTAKAFNDRLNFDGVILTKLDGDTRGGAAISIKSVVNK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +  ++ F     +  I G  D
Sbjct: 268 PIKFIGTGEKMEAIDVFYPNRMADRILGMGD 298


>gi|302835417|ref|XP_002949270.1| hypothetical protein VOLCADRAFT_74111 [Volvox carteri f.
           nagariensis]
 gi|300265572|gb|EFJ49763.1| hypothetical protein VOLCADRAFT_74111 [Volvox carteri f.
           nagariensis]
          Length = 505

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 6/201 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           H ++ VG+ G GKTT   K +      G K  L   DT+R+ A DQLK  A +    F  
Sbjct: 106 HTVMFVGLQGSGKTTTCTKYAYFYKKKGWKPALVCADTYRAGAFDQLKQNATKAQIPFYG 165

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S   +D AA+A +   + +    D++I+DT+GR    + L   + ++   +      +P 
Sbjct: 166 SYKETDPAAIAQQGVLRFKEDGRDLIIVDTSGRHKQEAALFEEMKQVAAAV------SPD 219

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            ++ V+D + GQ A  Q + F        +I+TK+DG A+GGG +  V   K P+ FLG 
Sbjct: 220 LIIFVMDGSIGQAAFDQAKAFKEAVEVGAVIITKLDGHAKGGGALSAVAATKSPIIFLGT 279

Query: 292 GEGINDLEPFVAKDFSAVITG 312
           GE ++  E F  K F   + G
Sbjct: 280 GEHMDQFESFETKRFVQRLLG 300


>gi|163839822|ref|YP_001624227.1| signal recognition particle protein [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953298|gb|ABY22813.1| signal recognition particle protein [Renibacterium salmoninarum
           ATCC 33209]
          Length = 522

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 111/217 (51%), Gaps = 18/217 (8%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169
           P VI++ G+ G GKTT+ GKLSK +   G   +L A D  R  A+ QL++  +R      
Sbjct: 100 PTVIMLAGLQGAGKTTLAGKLSKWLKGQGHSPLLVAADLQRPNAVKQLQVNGERAGVRVF 159

Query: 170 -----VCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                V SE  S   D  A+A     +A++K  DV+I+DTAGRL  ++ LM     +   
Sbjct: 160 APHPGVSSEFESATGDPVAVAQAGLAEARSKLHDVVIVDTAGRLGVDAELMQQAADIRAA 219

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +      +P  VL V+DA  GQ+A+   + F      TG++++K+DG ARGG  + +   
Sbjct: 220 I------SPDEVLFVIDAMIGQDAVATAQAFDEGVNFTGIVLSKLDGDARGGAALSVATV 273

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
              PV F   GE ++D E F     ++ I   LD G+
Sbjct: 274 TGKPVMFASTGESLDDFEVFHPDRMASRI---LDMGD 307


>gi|313608187|gb|EFR84220.1| signal recognition particle protein [Listeria monocytogenes FSL
           F2-208]
          Length = 450

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+ + +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            AP  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 213 AAPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  LE F     ++ I G  D
Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300


>gi|315303701|ref|ZP_07874216.1| signal recognition particle protein [Listeria ivanovii FSL F6-596]
 gi|313627928|gb|EFR96546.1| signal recognition particle protein [Listeria ivanovii FSL F6-596]
          Length = 450

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+   +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEDHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   E F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAESFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  LE F     ++ I G  D
Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300


>gi|307172333|gb|EFN63821.1| Signal recognition particle receptor subunit alpha-like protein
           [Camponotus floridanus]
          Length = 611

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 146/295 (49%), Gaps = 41/295 (13%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP- 98
           V E+L+D LI  ++   +AQK+ + +  K   K     D     +   +++ + ++L P 
Sbjct: 315 VLEKLKDHLITKNVAADIAQKLCDSVGMKLEGKVLGTFDSVANTIKATLTDALVQILSPK 374

Query: 99  -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                L        S+RP+V+   GVNGVGK+T + K+   + +   +V++AA DTFR+ 
Sbjct: 375 RRIDILRDALEAKKSNRPYVMTFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAG 434

Query: 154 AIDQLKIWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           A++QL+                +++         G DAA +A EA + A+  ++D++++D
Sbjct: 435 AVEQLRTHTRHLNALHPPEKHRNQSMVQLYEKGYGKDAAGIAMEAIRFAKDSRIDIVLVD 494

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259
           TAGR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ A+A  +
Sbjct: 495 TAGRMQDNEPLMRALTKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYS 548

Query: 260 ---------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                    G+++TK D    + G  I +      P+ F+G G+   DL+   AK
Sbjct: 549 QSANPHIIDGIVLTKFDTIDDKVGAAITMTYITGQPIVFVGTGQTYTDLKSLNAK 603


>gi|167842001|ref|ZP_02468685.1| signal recognition particle protein [Burkholderia thailandensis
           MSMB43]
          Length = 455

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +    KV+  + D +R AAI QLK  +++  ADF
Sbjct: 104 PAIILMAGLQGAGKTTTVGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADF 163

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +A  A   A+    DVL++DTAGRL  +  +M  I  +   L+      
Sbjct: 164 FPSTPDQKPVDIANAAVDWARRHYHDVLLVDTAGRLGIDEAMMREIAALHAALE------ 217

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA  GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+
Sbjct: 218 PVETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFV 277

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F     +  I G  D
Sbjct: 278 GVAEKLDGLEVFHPDRMANRILGMGD 303


>gi|225683542|gb|EEH21826.1| signal recognition particle 54 kDa protein [Paracoccidioides
           brasiliensis Pb03]
          Length = 500

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 135/277 (48%), Gaps = 18/277 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           +E+   L+ +D+ V + Q + + +        L     K   +Q+ ++D  +L+  ++ P
Sbjct: 3   KEICAALLSADVNVRLVQSLRKSIKSSVQFSSLPPAVNKKRLIQKTVFD--QLV-ALVDP 59

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             +PF      R +VI+ VG+ G GKTT   KL++     G +  L   DTFR+ A DQL
Sbjct: 60  HCEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARHYQTRGFRAALVCADTFRAGAFDQL 118

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K  A +    +  S   +D   +A E   + + ++ D++I+DT+GR    + L A + ++
Sbjct: 119 KQNATKAKIPYYGSLTQTDPVVVAAEGVAKFKKERFDIIIVDTSGRHKQEADLFAEMTQI 178

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
              +K      P   + VLD T GQ A  Q   F A A    +I+TK DG A GGG I  
Sbjct: 179 QTAIK------PDQTILVLDGTIGQAAEIQSSAFKATADFGAIIITKTDGAAAGGGAISA 232

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           V     P+ FLG GE + DLE F  K F   + G  D
Sbjct: 233 VAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMGD 269


>gi|221124258|ref|XP_002159557.1| PREDICTED: similar to Signal recognition particle protein 54k
           CG4659-PA [Hydra magnipapillata]
          Length = 419

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 107/209 (51%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT  GKL+K + +    KV+  +GD +R AAI+QLK    +  
Sbjct: 62  AQPPAVILMSGLQGAGKTTTTGKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAG 121

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S    +   +   A   A+    DVL++DTAGRL  +  LM+ I  +   L    
Sbjct: 122 AEWFPSTPDQNPVDIGRAALDYAKKHFFDVLLVDTAGRLAIDEALMSEIKNLHAALN--- 178

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F      TG+I+TK DG +RGG  + +      P+
Sbjct: 179 ---PVETLFVVDAMQGQDAVNTAKAFKEALPLTGIILTKTDGDSRGGAALSVRQITGAPI 235

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G  E ++ LE F A+  +  I G  D
Sbjct: 236 KFAGTSEKLDGLEVFDAERHAGRILGMGD 264


>gi|257124951|ref|YP_003163065.1| signal recognition particle protein [Leptotrichia buccalis
           C-1013-b]
 gi|257048890|gb|ACV38074.1| signal recognition particle protein [Leptotrichia buccalis
           C-1013-b]
          Length = 446

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 141/289 (48%), Gaps = 21/289 (7%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           ++   + D +RE +   L+ +D+  +VA+  V ++  K   + V       Q+ +  V++
Sbjct: 22  LTENNMKDALRE-VRLALLEADVNYSVAKNFVAKIREKALGEQVISGVNPTQQFVKIVND 80

Query: 91  LIHKML----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            + ++L    + ++K         P ++++ G+ G GKTT  GKL+K +   G K  L  
Sbjct: 81  ELVEVLGGSNVSIAKA-----DKNPTIVMLSGLQGAGKTTFSGKLAKHLRSKGEKPFLIG 135

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D +R AA  QLK+  ++        +   D   +  +  + ++ +    +IIDTAGRLH
Sbjct: 136 ADVYRPAAKKQLKVLGEQVKVPVFTIDESIDPLEIVKQGIEASKTEHATYVIIDTAGRLH 195

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            +  LM  +  +       D   P+ +L V+D  TGQ+A+   + F+     TG+++TK+
Sbjct: 196 IDEQLMHELQDI------KDCFNPNEILLVVDGMTGQDAVNVAKEFNEQLDITGVVLTKL 249

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           DG  RGG  + +      P+ F+  GE ++D+ PF     ++ I G  D
Sbjct: 250 DGDTRGGAALSVKEVAGKPIKFISEGEKLDDIAPFHPDRLASRILGMGD 298


>gi|302558146|ref|ZP_07310488.1| signal recognition particle protein [Streptomyces griseoflavus
           Tu4000]
 gi|302475764|gb|EFL38857.1| signal recognition particle protein [Streptomyces griseoflavus
           Tu4000]
          Length = 545

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 142/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++ +  +    +VS      Q+V+  V++ +  +L 
Sbjct: 57  DATAREIRIALLEADVALPVVRTFIKNVKERALGAEVSKALNPAQQVIKVVNDELITILG 116

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL + + + G   +L A D  R  A++Q
Sbjct: 117 GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGRWLKEQGHSPVLVAADLQRPNAVNQ 175

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+ K  D++I+DTAGRL  +  +M  
Sbjct: 176 LSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEFARTKVHDIVIVDTAGRLGIDQEMMQQ 235

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 236 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 289

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GE ++D + F     ++ I   LD G+
Sbjct: 290 ALSIRQITGKPIMFASNGEKLDDFDAFHPDRMASRI---LDMGD 330


>gi|221194740|ref|ZP_03567797.1| signal recognition particle protein [Atopobium rimae ATCC 49626]
 gi|221185644|gb|EEE18034.1| signal recognition particle protein [Atopobium rimae ATCC 49626]
          Length = 459

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 129/273 (47%), Gaps = 12/273 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+   V +  V    E+ LT      +S  Q V+  V   +  +L      
Sbjct: 33  EIRMALLEADVNYRVVKNFVARCKEQCLTAEVLDSLSPAQNVVRIVLNELTSLLGSTESK 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                +  P+VI++VG+ G GKTT   KL+  +   G   +LAA D  R AA DQL+   
Sbjct: 93  LTLAQNRIPNVIMLVGLQGSGKTTAAAKLAYLLKSEGKHPLLAACDVHRPAAADQLETLG 152

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                     + G DA A+A  + +QA     D++I+DTAGRL  +  +M     + + +
Sbjct: 153 SEIEVPVYRGD-GRDAVAIASASIQQAVDNMNDIVIVDTAGRLQIDEEMMQEAVAIKQAV 211

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           K      P  +L V+DA TGQ+ +  V  F       G+IM+K+DG ARGGG + +    
Sbjct: 212 K------PDQILMVVDAMTGQDIVNVVTTFAERVDFDGVIMSKLDGDARGGGALSVREVT 265

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             PV F+ +GE  + LE F     +  I G  D
Sbjct: 266 GKPVKFVSMGEKPDSLEVFHPDRMAKRILGMGD 298


>gi|56477903|ref|YP_159492.1| signal recognition particle protein [Aromatoleum aromaticum EbN1]
 gi|56313946|emb|CAI08591.1| Signal recognition particle protein [Aromatoleum aromaticum EbN1]
          Length = 452

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTS 166
           +  P V+L+ G+ G GKTT  GKL K + +   K +LA + D +R AAI+QLK  + +  
Sbjct: 97  TQPPAVVLMAGLQGAGKTTTTGKLGKLLHERMKKKVLAVSADVYRPAAIEQLKAVSAQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            DF  S        +A  A   A+    DV+++DTAGRL  ++ +M  I  +    K   
Sbjct: 157 IDFFPSTPDQKPVDIALAAIDHARRHYYDVVLLDTAGRLAIDAAMMDEIKALHAAAK--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+     F+     TG+++TK+DG ARGG  + +      P+
Sbjct: 214 ---PIETLFVVDAMLGQDAVNTARAFNEALPLTGVVLTKLDGDARGGAALSVRHVTGKPL 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GVGE ++ LE F  +  ++ I G  D
Sbjct: 271 KFAGVGEKLSGLEEFHPERMASRILGMGD 299


>gi|71030694|ref|XP_764989.1| signal recognition particle receptor subunit alpha [Theileria parva
           strain Muguga]
 gi|68351945|gb|EAN32706.1| signal recognition particle receptor alpha subunit, putative
           [Theileria parva]
          Length = 579

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 107/198 (54%), Gaps = 15/198 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           + I+ +GVNGVGK+T + K++  +   G KV++ A DTFRS A++QLK            
Sbjct: 378 YSIVFLGVNGVGKSTSLAKVAYLLKSNGFKVLVVACDTFRSGAVEQLKTHTTNLGLHLFE 437

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G D A +A E  K A   + DV++IDTAGR+ +N  LMA + K+I V      + P+
Sbjct: 438 RGYGKDPAQIAKEGIKHAVNNQFDVVLIDTAGRMQDNEPLMAALTKLIVV------NNPN 491

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGT------TGLIMTKMDGT--ARGGGLIPIVVTHK 283
            ++ V +A  G +A+ Q++ F+   G         L++TK D      G  L  + +T K
Sbjct: 492 LIIFVGEALVGNDAVDQLKKFNLAIGKGTDRTIDALLLTKFDTVDDKVGAALSMVYITGK 551

Query: 284 IPVYFLGVGEGINDLEPF 301
            P+ F+G G+  +DL+P 
Sbjct: 552 -PILFVGNGQTYSDLQPL 568


>gi|283768302|ref|ZP_06341214.1| signal recognition particle protein [Bulleidia extructa W1219]
 gi|283104694|gb|EFC06066.1| signal recognition particle protein [Bulleidia extructa W1219]
          Length = 466

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 103/203 (50%), Gaps = 7/203 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I++VG+ G GKTT I K++ ++    G K +L A D  R AAIDQLK      + +    
Sbjct: 104 IMMVGLQGTGKTTSIAKIANQVQVKQGRKALLIAADVIRPAAIDQLKTLGQEINTEVFSM 163

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
            +   A     +    A+ K  D + IDTAGRLH +  LM  +  + +++       P  
Sbjct: 164 GLNVSALETVEKGMAYAKEKNYDTVFIDTAGRLHIDEQLMKELQDINQLVH------PDE 217

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L  +DA TGQ+ +     F      TGL++TK DG +RGGG++ +     +P+ F+G G
Sbjct: 218 ILLTVDAMTGQDIVNVANAFKEALPLTGLVVTKFDGDSRGGGVLSVRKITGVPIKFVGEG 277

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E + D++ F     +  I G  D
Sbjct: 278 EKVEDMDVFHPDRMADRILGMGD 300


>gi|91787012|ref|YP_547964.1| signal recognition particle subunit FFH/SRP54 (srp54) [Polaromonas
           sp. JS666]
 gi|91696237|gb|ABE43066.1| signal recognition particle subunit FFH/SRP54 (srp54) [Polaromonas
           sp. JS666]
          Length = 452

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 108/212 (50%), Gaps = 13/212 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QLK    +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A++  S        +A  A   A+    DVL++DTAGRL  +  LM    K IR L    
Sbjct: 157 AEWFPSTPDQKPVDIAKAAIDYARRHFFDVLLVDTAGRLAIDEALM----KEIREL---- 208

Query: 227 PHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HA   P   L V+DA  GQ+A+   + F      TG+I+TK DG +RGG  + +     
Sbjct: 209 -HAALNPVETLFVVDAMQGQDAVNTAKAFKEALPLTGIILTKTDGDSRGGAALSVRQITG 267

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F G  E I+ LE F A+  +  I G  D
Sbjct: 268 APIKFSGTSEKIDGLEVFDAERHAGRILGMGD 299


>gi|49476256|ref|YP_034297.1| Signal recognition particle protein [Bartonella henselae str.
           Houston-1]
 gi|49239064|emb|CAF28367.1| Signal recognition particle protein [Bartonella henselae str.
           Houston-1]
          Length = 523

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 139/282 (49%), Gaps = 29/282 (10%)

Query: 48  ELEDLLIRSDIGVAVA--------QKIVEELLTKRYAKDVSVQRVLYDVSELIHKM---- 95
           E+   L+ +D+ + VA        +K V   + K       V ++++D  EL+H +    
Sbjct: 33  EIRRALLEADVALDVARSFTDRVREKAVGSAIVKSIKPGQMVVKIVHD--ELVHVLGNEG 90

Query: 96  -LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSA 153
            L  L+ P        P VI+++G+ G GKTT   KL+K+++     KV++A+ DT R A
Sbjct: 91  VLSDLNAPA-------PVVIMMIGLQGSGKTTTTAKLAKRLTHKHNKKVLMASLDTRRPA 143

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A +QL+   ++     +    G     +A  A + A+    DVL++DTAGR H +  LM 
Sbjct: 144 AQEQLRQLGEQAKLASLPIIAGQSPVDIATRAVQAAKLSGYDVLLLDTAGRNHIDEALML 203

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++    +      PH ++ V D+ TGQ+A+     F    G TG+I+T+MD   RGG
Sbjct: 204 ELVEIKACCR------PHEIMLVADSLTGQDAVHLARSFDERVGITGIILTRMDSDGRGG 257

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + +      P+  +G+GE I+DLE F     +  I G  D
Sbjct: 258 AALSMRAVTGKPIKAIGIGEKIDDLEEFHPTRIADRILGMGD 299


>gi|222153046|ref|YP_002562223.1| signal recognition particle protein [Streptococcus uberis 0140J]
 gi|222113859|emb|CAR41999.1| signal recognition particle protein [Streptococcus uberis 0140J]
          Length = 521

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    + +   
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPV 160

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              ++G+D +A  +  +  + A+  + D ++IDTAGRL  +  LMA +    R +K L  
Sbjct: 161 F--DMGTDHSAVEIVTKGLELARDNRNDYVLIDTAGRLQIDDKLMAEL----RDIKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+D+  GQ A      F+     TG+++TK+DG  RGG  + +      P+ 
Sbjct: 213 ANPNEILLVVDSMIGQEAANVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|262202018|ref|YP_003273226.1| signal recognition particle protein [Gordonia bronchialis DSM
           43247]
 gi|262085365|gb|ACY21333.1| signal recognition particle protein [Gordonia bronchialis DSM
           43247]
          Length = 517

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 144/317 (45%), Gaps = 29/317 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL D        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDSLSDRLTGALKDLRGKGRLSDADIDRTCREIRLALLEADVSLPVVRAFIARIKDRAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKIVNEELVGILGGETRRVTYAKTP-PTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------------DA 178
              +   G   ML A D  R  A+ QL+I  +R          G+             D 
Sbjct: 121 GHWLQQQGHTPMLVACDLQRPGAVSQLQIVGERAGVPVFAPHPGTSVGGEGVLGVSSGDP 180

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            A+A     +A+ +  DV+IIDTAGRL  +  LM      IR   R     P  VL V+D
Sbjct: 181 VAVAQGGVDEARRQHYDVVIIDTAGRLGIDEELMRQAAD-IREATR-----PDEVLFVVD 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+   + F    G TG+++TK+DG ARGG  + +      P+ F   GE + D 
Sbjct: 235 AMIGQDAVTTAQAFQDGVGFTGVVLTKLDGDARGGAALSVREVTGRPIMFASSGEKLEDF 294

Query: 299 EPFVAKDFSAVITGCLD 315
           + F     ++ I G  D
Sbjct: 295 DVFHPDRMASRILGMGD 311


>gi|302345690|ref|YP_003814043.1| signal recognition particle protein [Prevotella melaninogenica ATCC
           25845]
 gi|302150218|gb|ADK96480.1| signal recognition particle protein [Prevotella melaninogenica ATCC
           25845]
          Length = 450

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 9/199 (4%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWAD 163
            + S RP +IL+ G+ G GKTT  GKL+  +     K  +L A D +R AAIDQLK+  +
Sbjct: 93  LNLSGRPSIILMSGLQGSGKTTFSGKLANMLKTKEHKNPLLVACDVYRPAAIDQLKVVGE 152

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +            +   +A  A  +A+AK  DV+IIDTAGRL  +        +M+  ++
Sbjct: 153 QVGVAVYSEPENKNVNEIADHALAEAKAKGHDVVIIDTAGRLAVDE-------EMMNEIE 205

Query: 224 RLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            L  H  P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I    
Sbjct: 206 SLKNHVHPDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAALSIRTVV 265

Query: 283 KIPVYFLGVGEGINDLEPF 301
             P+ F+G GE +  ++ F
Sbjct: 266 TKPIKFIGTGEKMEAIDVF 284


>gi|226287163|gb|EEH42676.1| signal recognition particle 54 kDa protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 530

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 116/226 (51%), Gaps = 10/226 (4%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           +Q+ ++D  +L+  ++ P  +PF      R +VI+ VG+ G GKTT   KL++     G 
Sbjct: 75  IQKTVFD--QLV-ALVDPHCEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARHYQTRGF 130

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           +  L   DTFR+ A DQLK  A +    +  S   +D   +A E   + + ++ D++I+D
Sbjct: 131 RAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVAAEGVAKFKKERFDIIIVD 190

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           T+GR    + L A + ++   +K      P   + VLD T GQ A  Q   F A A    
Sbjct: 191 TSGRHKQEADLFAEMTQIQTAIK------PDQTILVLDGTIGQAAEIQSSAFKATADFGA 244

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F
Sbjct: 245 IIITKTDGAAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPF 290


>gi|313231336|emb|CBY08451.1| unnamed protein product [Oikopleura dioica]
          Length = 587

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 141/290 (48%), Gaps = 34/290 (11%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV----SVQRVLYD-VSELIHKMLM 97
           D + ++ +D LI  ++   +A K++  +  K   + +    S+++ +++ + E + ++L 
Sbjct: 296 DPILQKYKDNLISKNVASEIATKLISAVKNKLVGQTIGTFSSIKKAVFNGLEESLVQILT 355

Query: 98  P------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           P      L    +     RP+ I   GVNGVGK+T + K+   + + G ++M+AA DTFR
Sbjct: 356 PRRRVDILRDVLHAKGEGRPYSITFCGVNGVGKSTNLAKICFWLVENGFRIMIAACDTFR 415

Query: 152 SAAIDQLKIWADR------TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           + A++QLK    R       S        G D A +A  A   A+ +  DV +IDTAGR+
Sbjct: 416 AGAVEQLKTHVHRINGVHADSVKLFEQGYGKDPATIAMHAISAARDQGYDVCLIDTAGRM 475

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGTT 259
            +N  LM  + K+I +      + P +VL V +A  G +A+ Q+  F      H+ +   
Sbjct: 476 QDNEPLMRALAKLIAI------NRPDAVLFVGEALVGNDAIDQLTKFNKSLANHSQSNNP 529

Query: 260 ----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               G++++K D    + G  I +  T   P+ F+G G+   DL     K
Sbjct: 530 RLIDGIVLSKFDTIDDKVGAAISMTYTTGQPIVFIGTGQTYKDLNSLNPK 579


>gi|319409414|emb|CBI83060.1| signal recognition particle protein [Bartonella schoenbuchensis R1]
          Length = 520

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI+++G+ G GKTT   KL+K+++D    KV++A+ DT R AA +QL+   ++     
Sbjct: 100 PVVIMLIGLQGSGKTTTTAKLAKRLTDKHNKKVLMASLDTRRPAAQEQLRQLGEQAQLAS 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G  A  +   A + A+    DVL++DTAGR H +  LM  + + I+ L       
Sbjct: 160 LPIISGQSAVDITARAVQAAKLGAYDVLLLDTAGRNHLDDALMIELAE-IKALS-----L 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH ++ V D+ TGQ+A+     F    G TG+I+T+MD   RGG  + +      P+  +
Sbjct: 214 PHEIMLVADSLTGQDAVHLARSFDERVGLTGIILTRMDSDGRGGAALSMRAVTGKPIKAI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE I+ LE F     +  I G  D
Sbjct: 274 GVGEKIDALEEFHPHRIANRILGMGD 299


>gi|145593852|ref|YP_001158149.1| signal recognition particle protein [Salinispora tropica CNB-440]
 gi|145303189|gb|ABP53771.1| signal recognition particle subunit FFH/SRP54 (srp54) [Salinispora
           tropica CNB-440]
          Length = 514

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+++  V+E +  +L 
Sbjct: 28  DATAREIRLALLEADVALPVVKGFIARVKERARGAEVSQALNPAQQIVKIVNEELVNVLG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++         P VI++ G+ G GKTT+ GKL+  +   G + +L A D  R  A+ Q
Sbjct: 88  GEARRLQL-AKQPPTVIMLAGLQGSGKTTLAGKLASWLRGQGHQPLLVAADLQRPNAVGQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++   R   +    E G+   D   +A  + + A+    D++I+DTAGRL  ++ +M  
Sbjct: 147 LQVLGGRAGVEVYSPEPGNGVGDPVQVARASIEHARRAARDIVIVDTAGRLGIDAEMMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D   P  V+ V+DA  GQ+A+R  E F    G TG++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVNPDEVIFVIDAMVGQDAVRTAEAFRDGVGITGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F   GE + D + F     ++ I G  D
Sbjct: 261 ALSVREVTGQPILFASTGEKLEDFDVFHPDRMASRILGMGD 301


>gi|68072789|ref|XP_678308.1| signal recognition particle 54 kDa protein [Plasmodium berghei
           strain ANKA]
 gi|56498733|emb|CAH96838.1| signal recognition particle 54 kDa protein, putative [Plasmodium
           berghei]
          Length = 500

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 135/285 (47%), Gaps = 20/285 (7%)

Query: 42  DDGVREELEDLLIRS----DIGVAVAQKIVEELLTKRYAKDVSV-----QRVL--YDVSE 90
           DD + EE    +IR+    DI V +  K ++  + K   K+ +      +R++  Y V E
Sbjct: 24  DDNIIEECLKEIIRALILADINV-IYLKDIKSNIKKNIEKNAAAYGNNKKRLVQKYVVEE 82

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           LI K+L    + +      R +VIL VG+ G GKTT   K +      G K  L   DTF
Sbjct: 83  LI-KLLEGKKESYVPKKGDR-NVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALICADTF 140

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+ A DQLK  A +    F  S    D   +A +        K D++I+D++GR    + 
Sbjct: 141 RAGAFDQLKQNAAKVKIPFYGSYSEVDPVKIATDGVNAFLKDKYDLIIVDSSGRHKQEND 200

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           L   + ++   +K      P  ++ V+D+  GQ+   Q   F        +I+TK+DG A
Sbjct: 201 LFEEMKQVESSIK------PEEIVFVIDSHIGQSCHDQAMAFKNSVKVGSIIITKIDGHA 254

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GGG +  V     P+ F+G GE +ND E F AK F + + G  D
Sbjct: 255 KGGGALSAVSAIGCPITFIGTGEHVNDFEKFEAKSFVSRLLGLGD 299


>gi|209965489|ref|YP_002298404.1| signal recognition particle protein [Rhodospirillum centenum SW]
 gi|209958955|gb|ACI99591.1| signal recognition particle protein [Rhodospirillum centenum SW]
          Length = 452

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 12/233 (5%)

Query: 88  VSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKV 142
           V +++H  L+ L    S+  N   +  P  +L++G+ G GKTT   K++ ++ +    KV
Sbjct: 74  VIKIVHDHLVELLGETSEEINLSATP-PVPVLMLGLQGSGKTTTSAKIALRLKTREKKKV 132

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +LA+ DT R AA +QLK+ AD+     +    G     +A  A +  + +  DV+++DTA
Sbjct: 133 LLASLDTRRPAAQEQLKVLADQVGVASLPIIPGQTPVQIARRAMETGRLEGFDVVMLDTA 192

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL  +  LMA       V++  D   P   L V+DA TGQ+A+     F+   G TG++
Sbjct: 193 GRLAIDDELMA------EVVEIRDATKPVESLLVVDAMTGQDAVTVATNFNERVGITGIV 246

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           MT++DG ARGG  + +      P+  LGVGE ++ LE F     +  I G  D
Sbjct: 247 MTRIDGDARGGAALSMRYVTGKPIKLLGVGEKVDALESFHPDRIAGRILGMGD 299


>gi|108798927|ref|YP_639124.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. MCS]
 gi|119868042|ref|YP_937994.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. KMS]
 gi|126434527|ref|YP_001070218.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. JLS]
 gi|108769346|gb|ABG08068.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. MCS]
 gi|119694131|gb|ABL91204.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. KMS]
 gi|126234327|gb|ABN97727.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. JLS]
          Length = 520

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 150/315 (47%), Gaps = 27/315 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  + +  RL D        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALQGLRNKGRLTDADIDATAREIRLALLEADVSLPVVRAFVARIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++P  +  +  P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKIVNEELIGILGGETRPLVFAKTP-PTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-----------DAAA 180
           +K +   G   +L A D  R  A++QL+I  +R          G+           D  A
Sbjct: 121 AKWLRGQGHTPLLVACDLQRPGAVNQLQIVGERAGVSVFAPHPGTAPGAPEVKGTADPVA 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A     +A+AK  DV+++DTAGRL  +  LM      IR     D   P  VL VLDA 
Sbjct: 181 VAAAGLAEAKAKHFDVVVVDTAGRLGIDEELM-NQAAAIR-----DAVDPDEVLFVLDAM 234

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ+A+   E F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D + 
Sbjct: 235 IGQDAVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASSGEKLEDFDV 294

Query: 301 FVAKDFSAVITGCLD 315
           F     ++ I G  D
Sbjct: 295 FHPDRMASRILGMGD 309


>gi|198433605|ref|XP_002122258.1| PREDICTED: similar to mCG7475 [Ciona intestinalis]
          Length = 639

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 157/339 (46%), Gaps = 57/339 (16%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q    +S   I  + +G   +    KE +  +++S R          D LI  ++   +A
Sbjct: 312 QANTKKSSGGIFSMFRGLVGSKALTKEALQPVLNSMR----------DHLIGKNVAADIA 361

Query: 64  QKIVEELLTKRYAKDV--------SVQRVLYDVSELIHKMLMP------LSKPFNWDFSH 109
           +K+ + +  K   K V        +V++ L D   LI   L P      L        + 
Sbjct: 362 EKMCDSVANKLEGKMVGTFSTIASTVKQSLNDSLVLI---LTPKRRVDILRDVLEAQRAG 418

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK---------- 159
           +P+VI   GVNGVGK+T + K+   + + G +VM+AA DTFR+ A++QL+          
Sbjct: 419 KPYVITFCGVNGVGKSTNLAKICFWLMENGFRVMIAACDTFRAGAVEQLRTHKTRLHTLH 478

Query: 160 ---IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
              +   R   +      G DAA +A +A   A+ ++ DV+++DTAGR+ +N  LM  + 
Sbjct: 479 PPSMHGGRDGVNLFEKGYGKDAAGIAMQAINAAREQRYDVVLVDTAGRMQDNEPLMRSLA 538

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT---------GLIMTKM 266
           K+I V      ++P  VL V +A  G  A+ Q+  F+ A+A  +         G+++TK 
Sbjct: 539 KLITV------NSPDLVLFVGEALVGNEAVDQLVKFNQALADYSNAENPRSIDGIVLTKF 592

Query: 267 DG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           D    + G  I +  T   P+ F+G G+   DL    AK
Sbjct: 593 DTIDDKVGAAISMTYTTGQPIVFVGTGQSYPDLRRLNAK 631


>gi|209554600|ref|YP_002284516.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|209542101|gb|ACI60330.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
          Length = 448

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 136/276 (49%), Gaps = 19/276 (6%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV------SELIHKMLMPLSK 101
           E+   L+ +D+ + V +K ++ +  K     V   +   DV       EL+  +L   +K
Sbjct: 34  EIRITLLDADVNLLVVKKFIKNIKEKTIGLYVEQNQKPADVVLKVIKDELVE-ILGKENK 92

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKI 160
           P N   S     I++VG+ G GKTT  GKL+    +    K +L A D +R AAIDQL+ 
Sbjct: 93  PVNTAKSQLK--IMMVGLQGSGKTTTAGKLANYFRNKYNKKPLLVAADIYRPAAIDQLRT 150

Query: 161 WADRTSADFVCSEIGSDAAALAYE-AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            A +   DF   E G+    L  + A  +A   + +++I+DTAGRL  N  LM    +++
Sbjct: 151 LAKQVRVDFW--EEGTQRPDLTVKNALHKADENENNLVIVDTAGRLQTNEELMQ---ELV 205

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            V K L+P     V  V+DA  GQ+ +     F+     TG+I+TK+D  AR G ++ + 
Sbjct: 206 NVKKTLNPD---EVFLVVDAMAGQDIINVATEFNNWLKLTGIIVTKLDSDARAGAVLSLT 262

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +P+ F G GE I  ++ F  +  +  I G  D
Sbjct: 263 SLLNVPIKFTGTGEKIGSIDSFYPERMADRILGLGD 298


>gi|295105977|emb|CBL03520.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 471

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 102/208 (49%), Gaps = 7/208 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P+VI++VG+ G GKTT   KL+ ++       +L A D +R AA DQL+        
Sbjct: 97  SRIPNVIMLVGLQGSGKTTAAAKLAYRLKQENHSPLLVACDVYRPAAADQLQTLGGEIGV 156

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                + G D   +A E  + A     DV+I+DTAGRLH +  +M     + R +K    
Sbjct: 157 RVYRGD-GQDPVRIATEGVQDAIDNLRDVVIVDTAGRLHVDDEMMDEAEAIKRAVK---- 211

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+DA TGQ+ +     F       G+IM+KMDG ARGGG + I      P+ 
Sbjct: 212 --PDQILMVVDAMTGQDVVNVSAAFAERVDFDGVIMSKMDGDARGGGALSIKQVTGKPIK 269

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE  + LE F     +  I G  D
Sbjct: 270 FISSGEKPDSLEEFHPDRMAKRILGMGD 297


>gi|317502602|ref|ZP_07960723.1| signal recognition particle protein [Prevotella salivae DSM 15606]
 gi|315666283|gb|EFV05829.1| signal recognition particle protein [Prevotella salivae DSM 15606]
          Length = 449

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 7/192 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT  GKL+  + +    K +L A D +R AAI QLK+  ++     
Sbjct: 99  PAIILMSGLQGSGKTTFSGKLANLLKNKRNKKPLLVACDVYRPAAIQQLKVVGEQIGVPV 158

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D   +A  A ++A+AK  DV+I+DTAGRL  +  +M  I  +   L       
Sbjct: 159 YSEPESKDVITIANNAVREAKAKGYDVVIVDTAGRLAVDEEMMNEIANLKNALH------ 212

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I      P+ F+
Sbjct: 213 PDETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFV 272

Query: 290 GVGEGINDLEPF 301
           G GE +  ++ F
Sbjct: 273 GTGEKMEAIDAF 284


>gi|49474776|ref|YP_032818.1| Signal recognition particle protein [Bartonella quintana str.
           Toulouse]
 gi|49240280|emb|CAF26753.1| Signal recognition particle protein [Bartonella quintana str.
           Toulouse]
          Length = 539

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 140/282 (49%), Gaps = 29/282 (10%)

Query: 48  ELEDLLIRSDIGVAVA--------QKIVEELLTKRYAKDVSVQRVLYDVSELIHKM---- 95
           E+   L+ +D+ + VA        +K V   + K       V ++++D  EL+H +    
Sbjct: 33  EIRRALLEADVALDVARSFTDRIREKAVGAAIVKSIKPGQMVVKIVHD--ELVHVLGSEG 90

Query: 96  -LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSA 153
            L  L+ P        P VI+++G+ G GKTT   KL++++++    KV++A+ DT R A
Sbjct: 91  VLSDLNAPA-------PVVIMMIGLQGSGKTTTTAKLARRLTNKHNKKVLMASLDTRRPA 143

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A +QL+   ++     +    G     +A  A + A+    DVL++DTAGR H +  LM 
Sbjct: 144 AQEQLRQLGEQAKLASLPIIAGQSPIDIATRAVQAAKLGGYDVLLLDTAGRNHIDEALML 203

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + ++       D   P+ ++ V D+ TGQ+A+     F    G TG+I+T+MD   RGG
Sbjct: 204 ELAQI------KDSSLPYEIMLVADSLTGQDAVHLARSFDERVGITGIILTRMDSDGRGG 257

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + +      P+  +G+GE I+DLE F     +  I G  D
Sbjct: 258 AALSMRAVTGKPIKAIGIGEKIDDLEEFHPSRIADRILGMGD 299


>gi|222087524|ref|YP_002546061.1| signal recognition particle GTP-binding protein [Agrobacterium
           radiobacter K84]
 gi|221724972|gb|ACM28128.1| signal recognition particle GTP-binding protein [Agrobacterium
           radiobacter K84]
          Length = 521

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT   K++ +++    K V++A+ DT R AA +QL+    +   D 
Sbjct: 100 PVVVMMVGLQGSGKTTTSAKIAHRLTSRDRKKVLMASLDTRRPAAQEQLRQLGVQAGIDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+I+DTAGR H +  LM    +M  + K+ +PH 
Sbjct: 160 LPVIAGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMV---EMADIKKKSNPH- 215

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              +L V D+ TGQ+A+     F    G TGL++T+MDG  RGG  + +      P+  +
Sbjct: 216 --EILLVADSLTGQDAVNLARNFDDRVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE + +LE F  +  +  I G  D
Sbjct: 274 GVGEKMGELEEFHPRRIADRILGMGD 299


>gi|16950584|gb|AAL32278.1| signal recognition particle protein subunit [Arcanobacterium
           pyogenes]
          Length = 513

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 127/240 (52%), Gaps = 13/240 (5%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           Q+V+  V++ + ++L   ++  NW  S  P VI++ G+ G GKTT+ GKL + + + G +
Sbjct: 72  QQVVKIVNDELIEVLGGQARELNW-ASAAPTVIMLAGLQGAGKTTLAGKLGRWLRENGHR 130

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLI 198
            +L A D  R  A++QL++  ++   +    E G+   +   +A ++   A+    DV++
Sbjct: 131 PLLVASDLQRPNAVNQLQVVGEQAGVEVFAPEPGNGVGNPVEVARDSILFAKENTFDVVV 190

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL  +  +MA   + IR     D   P  +L VLDA  GQ+A+     F    G 
Sbjct: 191 VDTAGRLGVDEEMMA-QARDIR-----DAVNPDEILFVLDAMVGQDAVNTSIAFRDGVGF 244

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           TG++++K+DG ARGG  + +      PV F   GE ++  E F     ++ I   LD G+
Sbjct: 245 TGVVLSKLDGDARGGAALSVRGVTGQPVLFASTGEKLDAFERFHPDRMASRI---LDMGD 301


>gi|292654301|ref|YP_003534198.1| signal recognition particle 54K protein [Haloferax volcanii DS2]
 gi|28380161|sp|Q977V2|SRP54_HALVO RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|15277690|gb|AAK93963.1|AF395887_1 signal recognition particle 54 kDa subunit-like protein [Haloferax
           volcanii]
 gi|291371443|gb|ADE03670.1| signal recognition particle 54K protein [Haloferax volcanii DS2]
          Length = 465

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 100/204 (49%), Gaps = 8/204 (3%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
             I++ G+ G GKTT   K++   S  GL+  +   DTFR  A DQ K   +R   DF  
Sbjct: 98  QTIMLAGLQGSGKTTTSAKMAWWFSKKGLRPAVIQTDTFRPGAYDQAKQMCERAEVDFYG 157

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                D   +A E  +  +    DV I+DTAGR      L+  I ++  V++      P 
Sbjct: 158 DPDCDDPVQIAREGLEATE--DADVHIVDTAGRHALEDDLIDEIEEIEGVVQ------PD 209

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L VLDA  GQ A  Q + F    G  G+++TK+DGTA+GGG +  V      + FLG+
Sbjct: 210 LNLLVLDAAIGQGAKEQAQQFDESIGIGGVVITKLDGTAKGGGALTAVNETDSSIAFLGM 269

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE + D+E F    F + + G  D
Sbjct: 270 GETVQDIERFEPNGFISRLLGMGD 293


>gi|312071485|ref|XP_003138630.1| srpr protein [Loa loa]
 gi|307766205|gb|EFO25439.1| srpr protein [Loa loa]
          Length = 662

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 141/299 (47%), Gaps = 38/299 (12%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP- 102
           V +++ + LI  ++    A+K+ + +  K   K V +  RV   V E + + L+ L  P 
Sbjct: 372 VLDKMRETLIAKNVAAEPAEKLCQSVEVKLEGKVVGTFSRVASIVKESVREALVQLLTPR 431

Query: 103 ---------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                    F      RP++I+  GVNGVGK+T + K++  +++ G KV++AA DTFR+ 
Sbjct: 432 RRVDILRDIFEAKREKRPYIIVFCGVNGVGKSTNLAKITFWLNENGHKVLIAAADTFRAG 491

Query: 154 AIDQLKIWA------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           A++QL+            S        G D A L   A   A  +  DV+++DTAGR+ +
Sbjct: 492 AVEQLRTHTMHLNALHPNSVQLYEQGYGKDPAGLTAAAISIAMERGTDVVMVDTAGRMQD 551

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGTT-- 259
           N  LM  + K+I++ K      P  VL V +A  G  A+ Q+  F      HA  G    
Sbjct: 552 NEPLMRSLAKLIQLNK------PDLVLFVGEALVGNEAVDQLVKFNQALADHAALGVEGR 605

Query: 260 ---GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
              G+++TK D    + G  I +      P+ F+G G+   DL+     D + V+   L
Sbjct: 606 LIDGIVLTKFDTVDDKVGAAISMTYITGQPIVFVGTGQTYKDLKSL---DINTVVHSLL 661


>gi|302386490|ref|YP_003822312.1| signal recognition particle protein [Clostridium saccharolyticum
           WM1]
 gi|302197118|gb|ADL04689.1| signal recognition particle protein [Clostridium saccharolyticum
           WM1]
          Length = 449

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 152/304 (50%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     +    RL +  V+  L+++   L+ +D+   V ++ +  +  +   
Sbjct: 3   FESLSDKLQNVFKSLRGKGRLSEADVKTALKEVKMALLEADVSFKVVKQFISAVQERAIG 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E + K++   +       +    +I++ G+ G GKTT   K+
Sbjct: 63  QDVQNSLTPGQMVIKIVNEELVKLMGSETTEIRLKPAGDMTIIMMAGLQGAGKTTTTAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G K +L A D +R AAI QL+I  ++              A +A  A   A  
Sbjct: 123 AGKLKAKGRKPLLVACDVYRPAAIKQLQINGEKQGVPVFSMGENHKPADIAKAAIAYAAK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +V+I+DTAGRLH +  +M    ++I +   ++ H   ++L V+DA TGQ+A+    M
Sbjct: 183 NDQNVVILDTAGRLHIDEDMM---NELIEIKGTVEVH--QTIL-VVDAMTGQDAVNVAGM 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + I      PV ++G+GE ++DLE F     ++ I 
Sbjct: 237 FNDKIGIDGVIITKLDGDTRGGAALSIRAVTGKPVLYVGMGEKLSDLEQFYPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|332524016|ref|ZP_08400268.1| signal recognition particle protein [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332315280|gb|EGJ28265.1| signal recognition particle protein [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 517

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    + +   
Sbjct: 101 PTIIMMVGLQGAGKTTFAGKLANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPV 160

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              ++G+D +A  +  +    A+  + D ++IDTAGRL  +  LM  +    R +K L  
Sbjct: 161 F--DMGTDHSAVEIVRQGLSLAKENRNDYVLIDTAGRLQIDEKLMTEL----RDVKAL-- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +L V+D+  GQ A    + F+     TG+++TK+DG  RGG  + +      P+ 
Sbjct: 213 ANPNEILLVVDSMIGQEAANVADEFNKQLEITGVVLTKIDGDTRGGAALSVREITGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F G GE I D+E F     S+ I G  D
Sbjct: 273 FTGTGEKITDIETFHPDRMSSRILGMGD 300


>gi|328957317|ref|YP_004374703.1| signal recognition particle-like (SRP) GTPase [Carnobacterium sp.
           17-4]
 gi|328673641|gb|AEB29687.1| signal recognition particle-like (SRP) GTPase [Carnobacterium sp.
           17-4]
          Length = 475

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  +  +   + +L A D +R AAI QL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLASYLRKNQNKRPLLIAADIYRPAAIQQLETIGKQLDVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +A +  ++A+A+ +D ++IDTAGRL  +  LM  +  +           
Sbjct: 161 FSMGDQVSPVEIARQGIEKAKAEHLDFVLIDTAGRLQIDETLMQELSDIKET------SQ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +  V+DA TGQ A      F+     TG+I+TK+DG  RGG  + I      P+ F 
Sbjct: 215 PTEIFLVVDAMTGQEAANVASSFNEQLDITGVILTKLDGDTRGGAALSIRAVTGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE ++ LEPF  +  +  I G  D
Sbjct: 275 GSGEKLDALEPFYPERMANRILGMGD 300


>gi|12044898|ref|NP_072708.1| signal recognition particle protein [Mycoplasma genitalium G37]
 gi|1351112|sp|P47294|SRP54_MYCGE RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|1045721|gb|AAC71264.1| signal recognition particle protein [Mycoplasma genitalium G37]
 gi|166078612|gb|ABY79230.1| signal recognition particle protein [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 446

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 138/280 (49%), Gaps = 22/280 (7%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDV--SELIHKMLMP 98
           V +E+   L+ +D+ + V +  ++ +  K   + +     +Q+ L     +ELI+     
Sbjct: 31  VLKEIRIALLDADVNLLVVKNFIKAIRDKTVGQTIEPGQDLQKSLLKTIKTELIN----I 86

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQ 157
           LS+P       RP  I++VG+ G GKTT  GKL+  +      K ML   D +R AAI+Q
Sbjct: 87  LSQPNQELNEKRPLKIMMVGLQGSGKTTTCGKLAYWLEKKYKQKTMLVGLDIYRPAAIEQ 146

Query: 158 LKIWADRTSADFVC--SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           L+  + +T++ F    ++  +     A  AFK A   K   +I DTAGRL  N  LM   
Sbjct: 147 LETLSQQTNSVFFAQGTQPVAKTTKAALSAFKTA---KCQTIICDTAGRLQTNETLM--- 200

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +++ V   L+P     ++ V+D  +GQ  +   + FH     TG I++K+D  AR G  
Sbjct: 201 DELVSVKNELNPD---EIIMVVDGLSGQEIINVAQTFHKRLKLTGFIISKLDSDARAGAA 257

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + +    ++P+  +GV E ++ LE F  +  +  I G  D
Sbjct: 258 LSLASLLQVPIKLIGVSEKLDGLEQFHPERIANRILGLGD 297


>gi|332290696|ref|YP_004429305.1| signal recognition particle protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332168782|gb|AEE18037.1| signal recognition particle protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 442

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 13/214 (6%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADR 164
           + S  P +IL+ G+ G GKTT  GKL+  +     K  +L A D +R AAIDQL +  D+
Sbjct: 94  NLSGTPSIILMSGLQGSGKTTFSGKLANFLKTKKTKKPLLVACDVYRPAAIDQLHVVGDQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              D        +   +A +    A+A   +V+IIDTAGRL  + ++M  I         
Sbjct: 154 IKVDVYSDRDEKNPVKIAQDGIAFAKANGHNVVIIDTAGRLAVDEVMMKEIA-------- 205

Query: 225 LDPHA---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            D HA   P   L V+D+ TGQ+A+   + F+ +    G+I+TK+DG  RGG  I I   
Sbjct: 206 -DVHAAIQPQETLFVVDSMTGQDAVNTAKAFNDILNFDGVILTKLDGDTRGGAAISIKSV 264

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ F+G GE +  ++ F     +  I G  D
Sbjct: 265 VNKPIKFIGTGEKMEAIDVFYPSRMADRILGMGD 298


>gi|205355551|ref|ZP_03222322.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346785|gb|EDZ33417.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 346

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 106/197 (53%), Gaps = 6/197 (3%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           + G+ G GKTT   KL+  +     KV++AA D  R AA++QL+   +    +    E  
Sbjct: 1   MAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENE 60

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D   +A EA K+A++  VDVL++DTAGRL  +  LM      +R +K  D   P  +  
Sbjct: 61  KDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALM----DELRAVK--DVLNPDEIFY 114

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V DA +GQ+ ++    F+ V G +G+I++K D   +GG  + I     IP+ F+GVGE +
Sbjct: 115 VADAMSGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKV 174

Query: 296 NDLEPFVAKDFSAVITG 312
            DLE F+     + I G
Sbjct: 175 ADLEVFIPDRIVSRIMG 191


>gi|220922839|ref|YP_002498141.1| signal recognition particle protein [Methylobacterium nodulans ORS
           2060]
 gi|219947446|gb|ACL57838.1| signal recognition particle protein [Methylobacterium nodulans ORS
           2060]
          Length = 522

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 135/260 (51%), Gaps = 13/260 (5%)

Query: 48  ELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V     +K+ E+ +     K V+  Q V+  V++ +  ML   ++ 
Sbjct: 33  EVRRALLEADVALEVVRTFTEKVREQAVGATVLKSVTPGQMVVKIVNDQLVAMLGAEAEV 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIW 161
            + + +  P  IL+VG+ G GKTT   K++K++ S    +V+LA+ DT R AA++QL + 
Sbjct: 93  IDLN-APSPVPILMVGLQGSGKTTTTAKIAKRLTSRDRRRVLLASLDTRRPAAMEQLAVL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +   + +    G  A  +A  A + A+    DV+++DTAGR+  +  LM     +   
Sbjct: 152 GRQVGVETLPIVAGQSAVQIAKRAMEAARLGGFDVVMLDTAGRITIDEGLMQEAADVKAA 211

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                   PH VL V DA TGQ+A+     F    G TG+++T+MDG ARGG  + +   
Sbjct: 212 TN------PHEVLLVADALTGQDAVNTARAFDQRLGVTGIVLTRMDGDARGGAALSMRAV 265

Query: 282 HKIPVYFLGVGEGINDLEPF 301
              P+  +G GE ++ LE F
Sbjct: 266 TGKPIKLVGTGEKVDALEEF 285


>gi|296274038|ref|YP_003656669.1| signal recognition particle protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296098212|gb|ADG94162.1| signal recognition particle protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 451

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 110/210 (52%), Gaps = 7/210 (3%)

Query: 107 FSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           FS+ P   IL+ G+ G GKTT  GKL+  +     KV++AA D  R AA++QLK    + 
Sbjct: 89  FSNTPPTTILMTGLQGSGKTTTTGKLANYLKQRKKKVLIAACDLQRLAAVEQLKQICAQI 148

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             D    +I  D   +A  A ++A+ +  DVL++DTAGRL  ++ LM  +GK+   L   
Sbjct: 149 EVDLYFDDIEKDPVKIAKAAQEKAKKELYDVLLVDTAGRLAIDTELMNQLGKVKDALN-- 206

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  +  V D+ TG +A +    F    G  G+I++K DG  +GG  I +     +P
Sbjct: 207 ----PDEIFYVADSLTGHDATKTASSFKEQIGIDGVILSKFDGDTKGGVAISLAEQVGVP 262

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G GE + DLE F+     + + G  D
Sbjct: 263 LRFVGTGEKMPDLEVFIPDRIVSRLMGAGD 292


>gi|213404072|ref|XP_002172808.1| signal recognition particle receptor subunit alpha
           [Schizosaccharomyces japonicus yFS275]
 gi|212000855|gb|EEB06515.1| signal recognition particle receptor subunit alpha
           [Schizosaccharomyces japonicus yFS275]
          Length = 527

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 107/199 (53%), Gaps = 16/199 (8%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----- 164
           RP+ I ++GVNGVGK+T + +L+  +    L++++AA DTFRS AI+QL +         
Sbjct: 321 RPYTISLIGVNGVGKSTTLSRLAYWLLSNKLRILVAACDTFRSGAIEQLNVHVTNLKKVH 380

Query: 165 -TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
             + +      G DA+ +   A + A     DV+++DTAGR HN+  LM  + K  +  K
Sbjct: 381 GDNIELFAQGYGKDASIVVKNAVQYASQNNFDVILVDTAGRRHNDQRLMGSLEKFTKATK 440

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAV---AGTTGLIMTKMDGTAR-GGGLIPIV 279
            LD      + QV +A  G ++L Q + F A        G I++K+D      G ++ +V
Sbjct: 441 -LDK-----IFQVAEALVGTDSLAQAKHFQASLYHRRLDGFIISKVDAVGELVGVMVGMV 494

Query: 280 VTHKIPVYFLGVGEGINDL 298
            T  +P+ F+GVG+  +DL
Sbjct: 495 YTTHVPIVFVGVGQTYSDL 513


>gi|190346780|gb|EDK38947.2| hypothetical protein PGUG_03045 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 529

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 140/286 (48%), Gaps = 30/286 (10%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-LSK 101
           D V +   D  I  +I  A A+ I ++L  +   K V+++     ++  + K+L P +S 
Sbjct: 242 DEVSKTFTDQFISKNIAPATAKTITDKLNHELKGKKVTLKDYKRALTVELTKILTPNVST 301

Query: 102 PFNWDF-------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
              +D        + RP+VI VVGVNGVGK+T + KL+       L V++ A DTFRS A
Sbjct: 302 DLLYDVKRNSSTSNSRPYVISVVGVNGVGKSTNLAKLAYWFLQNNLNVLICACDTFRSGA 361

Query: 155 IDQLKIWAD---------RTSADFVCSEI--GSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           ++QLK+  +          T  D        G    A A  A + A A+  D+++IDTAG
Sbjct: 362 VEQLKVHVNNLKRLNTTTNTKIDIFEKGYGGGDHVVATAKSAIEFAGAEGFDIVLIDTAG 421

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG--- 260
           R H+N+ LMA + K        D   P+ ++ V +A  G +++ Q   F+   G      
Sbjct: 422 RTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQAVNFNNAFGNRRSLD 475

Query: 261 -LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
             I++K+D      G +I +V+  K+P+ F+G G+   D++    K
Sbjct: 476 FFIISKVDTVGDLVGSMINMVMATKVPILFVGTGQVYTDIKRLSVK 521


>gi|327328022|gb|EGE69791.1| signal recognition particle protein [Propionibacterium acnes
           HL103PA1]
          Length = 528

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 143/284 (50%), Gaps = 18/284 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    ++   L+ +D+ ++V ++ V  +  + + +++S      Q+++  V+E + ++L 
Sbjct: 28  DATTRQIRIALLEADVNLSVVKEFVAAIKERCHGEELSKALNPTQQIVKIVNEELVEILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +    ++++ G+ G GKTT+ GKL++   + G   +LAA D  R  A+ Q
Sbjct: 88  GQTRTVRFAKTSS-TIVMLAGLQGAGKTTLAGKLAQWFKEEGHSPLLAACDLQRPNAVTQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        E G+   D   +A +A  +A+ K  DV+IIDTAGRL  ++ +MA 
Sbjct: 147 LQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAEAEHKLYDVVIIDTAGRLGVDAEMMAQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +           P   L V+DA  GQ+A+     F    G  G+++TK+DG ARGG 
Sbjct: 207 AADIKTATD------PDETLFVVDAMIGQDAVNTAVAFQEGVGFDGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            + I      P+ F   GEG+ D + F     ++ I   LD G+
Sbjct: 261 ALSIARVVGKPIMFASSGEGLKDFDVFHPDRMASRI---LDMGD 301


>gi|288802708|ref|ZP_06408146.1| signal recognition particle protein [Prevotella melaninogenica D18]
 gi|288334858|gb|EFC73295.1| signal recognition particle protein [Prevotella melaninogenica D18]
          Length = 450

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 9/199 (4%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWAD 163
            + S RP +IL+ G+ G GKTT  GKL+  +     K  +L A D +R AAIDQLK+  +
Sbjct: 93  LNLSGRPSIILMSGLQGSGKTTFSGKLANMLKTKEHKNPLLVACDVYRPAAIDQLKVVGE 152

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +            +   +A  A  +A+AK  D++IIDTAGRL  +        +M+  ++
Sbjct: 153 QVGVAVYSEPENKNVNEIADHALAEAKAKGHDIVIIDTAGRLAVDE-------EMMNEIE 205

Query: 224 RLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            L  H  P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I    
Sbjct: 206 SLKNHVHPDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAALSIRTVV 265

Query: 283 KIPVYFLGVGEGINDLEPF 301
             P+ F+G GE +  ++ F
Sbjct: 266 TKPIKFIGTGEKMEAIDVF 284


>gi|34540847|ref|NP_905326.1| signal recognition particle protein [Porphyromonas gingivalis W83]
 gi|34397161|gb|AAQ66225.1| signal recognition particle protein [Porphyromonas gingivalis W83]
          Length = 445

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 152/313 (48%), Gaps = 25/313 (7%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEG-ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           SE L    KL KG         EG IT+I  +  L D VR  L D    +D+   VA++ 
Sbjct: 6   SERLDRSFKLLKG---------EGRITEINVAETLKD-VRRALLD----ADVNYVVAKQF 51

Query: 67  VEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVG 123
            + +  K   ++V +  R    + +++H  L  L    + D + +  P VIL+ G+ G G
Sbjct: 52  TDLVKEKAIGQNVLTSVRPGELMVKIVHDELAALMGGHSVDINLKGSPAVILMSGLQGSG 111

Query: 124 KTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT  GKL+  + S  G + +L A D +R AAI QL I  ++                +A
Sbjct: 112 KTTFSGKLANMLKSKQGKRPLLVACDVYRPAAIQQLMILGEQLGVPVYSEPDSKKPVEIA 171

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             A  +A+ K  DV+IIDTAGRL  +  +M  I  +   ++      P+ VL V+D+ TG
Sbjct: 172 RHAIAEAKTKGNDVVIIDTAGRLAIDEEMMREIEAIKAAIQ------PNEVLFVVDSMTG 225

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+   + F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F 
Sbjct: 226 QDAVNTAKEFNTRLDFDGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKMEAIDAFH 285

Query: 303 AKDFSAVITGCLD 315
            +  +  I G  D
Sbjct: 286 PERMADRILGMGD 298


>gi|157169464|ref|XP_001651530.1| signal recognition particle receptor alpha subunit (sr-alpha)
           [Aedes aegypti]
 gi|108878422|gb|EAT42647.1| signal recognition particle receptor alpha subunit (sr-alpha)
           [Aedes aegypti]
          Length = 623

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 140/293 (47%), Gaps = 41/293 (13%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP--- 98
           ++L D LI  ++   ++ K+ E +  K   K     D     V   ++E + ++L P   
Sbjct: 329 DKLRDHLISKNVASDISHKLCESVAVKLEGKVLGTFDTIATTVKNTLTEALVQILSPKRR 388

Query: 99  ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              L        + RP+V+   GVNGVGK+T + K+   + +  L V++AA DTFR+ A+
Sbjct: 389 VDILRDCLEAKKNKRPYVMSFCGVNGVGKSTNLAKICFWLIENNLNVLIAACDTFRAGAV 448

Query: 156 DQLKIW-------------ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QL+               + R          G DAA +A EA + A+   VDV++IDTA
Sbjct: 449 EQLRTHMRHLNALHPPEKHSGRNMVQLYEKGYGKDAAGIAMEAIRHAKDSAVDVVLIDTA 508

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259
           GR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ A+A  +  
Sbjct: 509 GRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYSSN 562

Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                  G+++TK D    + G  I +      P+ F+G G+   DL+   AK
Sbjct: 563 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKKLNAK 615


>gi|218261279|ref|ZP_03476151.1| hypothetical protein PRABACTJOHN_01817 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224125|gb|EEC96775.1| hypothetical protein PRABACTJOHN_01817 [Parabacteroides johnsonii
           DSM 18315]
          Length = 441

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 154/314 (49%), Gaps = 27/314 (8%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEG-ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           SE L    KL KG         EG IT+I  +  L D VR+ L D    +D+   VA+  
Sbjct: 6   SERLDRSFKLLKG---------EGKITEINVAETLKD-VRKALLD----ADVNYKVAKSF 51

Query: 67  VEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGV 122
            + + TK   ++V  SV+     V +++H  L  L      + D    P +IL+ G+ G 
Sbjct: 52  TDTVKTKALGQNVLTSVKPSQLMV-KIVHDELADLMGGTATDLDLKGSPAIILMSGLQGS 110

Query: 123 GKTTVIGKLSKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           GKTT  GKL+  +     K  L AA D +R AAI+QL++  ++            +   +
Sbjct: 111 GKTTFSGKLANLLKTKKNKKPLLAACDVYRPAAIEQLRVVGEQVGVPVYMELENKNPVEI 170

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A  A ++A+AK  DV+I+DTAGRL  +  +M  I  +   ++      P   L V+D+ T
Sbjct: 171 AMNAIREARAKGNDVVIVDTAGRLAIDEQMMKEIAAIKSAIQ------PDETLFVVDSMT 224

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+A+   + F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F
Sbjct: 225 GQDAVNTAKEFNERLDFDGVVLTKLDGDTRGGAALSIRTVVDKPIKFVGTGEKMDALDIF 284

Query: 302 VAKDFSAVITGCLD 315
             +  +  I G  D
Sbjct: 285 HPERMADRILGMGD 298


>gi|170580372|ref|XP_001895235.1| signal recognition particle receptor alpha subunit  [Brugia malayi]
 gi|158597920|gb|EDP35937.1| signal recognition particle receptor alpha subunit , putative
           [Brugia malayi]
          Length = 669

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 141/299 (47%), Gaps = 38/299 (12%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP- 102
           V +++ + LI  ++    A+K+ + +  K   K V +  RV   V E +   L+ L  P 
Sbjct: 379 VLDKMRETLIAKNVAADPAEKLCQSVEVKLEGKVVGTFSRVASIVKESVRDALVQLLTPK 438

Query: 103 ---------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                           RP++I+  GVNGVGK+T + K++  +++ G KV++AA DTFR+ 
Sbjct: 439 RRVDILRDILEAKREKRPYIIVFCGVNGVGKSTNLAKITFWLNENGHKVLIAAADTFRAG 498

Query: 154 AIDQLKIWADR------TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           A++QL+            S        G D A LA  A   A  +  DV+++DTAGR+ +
Sbjct: 499 AVEQLRTHTKHLNALHPNSVQLYEQGYGKDPAGLAAAAISIAVERGTDVVLVDTAGRMQD 558

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGTT-- 259
           N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F      HA  G    
Sbjct: 559 NEPLMRSLAKLIQV------NQPDLVLFVGEALVGNEAVDQLVKFNQSLADHAALGDEGR 612

Query: 260 ---GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
              G+++TK D    + G  I +      P+ F+G G+   DL+   A   SAV+   L
Sbjct: 613 LIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYKDLKSLNA---SAVVHSLL 668


>gi|188995069|ref|YP_001929321.1| signal recognition particle protein [Porphyromonas gingivalis ATCC
           33277]
 gi|188594749|dbj|BAG33724.1| signal recognition particle protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 445

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 152/313 (48%), Gaps = 25/313 (7%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEG-ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           SE L    KL KG         EG IT+I  +  L D VR  L D    +D+   VA++ 
Sbjct: 6   SERLDRSFKLLKG---------EGRITEINVAETLKD-VRRALLD----ADVNYVVAKQF 51

Query: 67  VEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVG 123
            + +  K   ++V +  R    + +++H  L  L    + D + +  P VIL+ G+ G G
Sbjct: 52  TDLVKEKAIGQNVLTSVRPGELMVKIVHDELAALMGGHSVDINLKGSPAVILMSGLQGSG 111

Query: 124 KTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT  GKL+  + S  G + +L A D +R AAI QL I  ++                +A
Sbjct: 112 KTTFSGKLANMLKSKQGKRPLLVACDVYRPAAIQQLMILGEQLGVPVYSEPDSKKPVEIA 171

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             A  +A+ K  DV+IIDTAGRL  +  +M  I  +   ++      P+ VL V+D+ TG
Sbjct: 172 RHAIAEAKTKGNDVVIIDTAGRLAIDEEMMREIEAIKAAIQ------PNEVLFVVDSMTG 225

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+   + F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F 
Sbjct: 226 QDAVNTAKEFNTRLDFDGVVLTKLDGDTRGGAALSIRSIVNKPIKFVGTGEKMEAIDAFH 285

Query: 303 AKDFSAVITGCLD 315
            +  +  I G  D
Sbjct: 286 PERMADRILGMGD 298


>gi|29840416|ref|NP_829522.1| signal recognition particle [Chlamydophila caviae GPIC]
 gi|29834765|gb|AAP05400.1| signal recognition particle [Chlamydophila caviae GPIC]
          Length = 447

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 141/288 (48%), Gaps = 20/288 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELLTKRYAKDVSV--QRVLYDVS 89
           I+   + + +RE +   L+ +D+   V +    K+ E++L +   K VS   Q + Y   
Sbjct: 22  ITEENISEAIRE-VRLALLDADVNYHVVKSFIAKVKEKILGEEVWKHVSPGQQFIRYLHE 80

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAG 147
           EL       LS   +   S  P VIL+ G+ G GKTT   KL+    + G   KV++   
Sbjct: 81  ELTE----LLSGKADLITSGNPGVILLCGLQGTGKTTTCAKLAAYALEEGKAKKVLVVPC 136

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D  R AA+DQL+    +T A+    E G D   +A +A   A+    D+++IDTAGRLH 
Sbjct: 137 DLKRFAAVDQLRNLISKTRAELYNPE-GQDPVKVASQALDYAKQHGHDLVLIDTAGRLHV 195

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           + +LM  +  + ++ K  +       L V++   GQ+A+   + F      TG+I++  D
Sbjct: 196 DEVLMEELASIQKISKSCER------LFVMNLAMGQDAVTTAKAFDDYLDLTGVIISMTD 249

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G AR G ++ +      P+ F G GE I DL PF A+  +  I G  D
Sbjct: 250 GDARAGAVLSMKSLLGKPIKFEGCGEKIQDLRPFNAESMADRILGMGD 297


>gi|326382869|ref|ZP_08204559.1| signal recognition particle protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198459|gb|EGD55643.1| signal recognition particle protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 524

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 147/318 (46%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL D        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTGALKDLRGKGRLTDADVDATAREIRLALLEADVSLPVVRTFIARIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++       + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQIVKIVNEELIGILGGETRRVQL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177
           S  +   G   +L A D  R  A+ QL+I  +R          G+              D
Sbjct: 121 SAWLVKQGHTPLLVACDLQRPGAVQQLQIVGERAGVPVFAPHPGTSVGGEGALGVDGSAD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+A    ++A+ K+ DV+IIDTAGRL  ++ LM      IR     D  +P  VL VL
Sbjct: 181 PVAVAQAGVQEAKDKQHDVVIIDTAGRLGIDAELMRQASD-IR-----DATSPDEVLFVL 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   + F      TG+++TK+DG ARGG  + +      P+ F   GE + D
Sbjct: 235 DAMIGQDAVTTAQAFADGVDFTGVVLTKLDGDARGGAALSVREITGRPIMFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     ++ I G  D
Sbjct: 295 FDVFHPDRMASRILGMGD 312


>gi|312212847|emb|CBX92929.1| similar to signal recognition particle receptor subunit alpha
           [Leptosphaeria maculans]
          Length = 641

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 110/205 (53%), Gaps = 20/205 (9%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-- 165
           + RP+V+ +VGVNGVGK+T + K++  +     +V++AA DTFRS A++QL++  DR   
Sbjct: 429 TSRPYVLSIVGVNGVGKSTNLSKIAFFLLQNHHRVLIAAADTFRSGAVEQLRVHVDRLKE 488

Query: 166 -------SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
                    D      G DAA +A +A   A+    +V++IDTAGR HN+  LM+ + K 
Sbjct: 489 LSQREGGQVDLFEKGYGKDAANIAADAVIFAEKNNFNVVLIDTAGRRHNDQRLMSSLEKF 548

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARG-G 273
            ++        P  +L V +A  G +++ Q   F+A  G      G +++K D      G
Sbjct: 549 GKLAN------PDKILMVGEALVGTDSVAQARNFNASFGAGRSLDGFVISKCDTVGDMVG 602

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDL 298
            L+ +V    IPV FLG G+  +DL
Sbjct: 603 TLVSMVHATGIPVVFLGTGQHYSDL 627


>gi|319952152|ref|YP_004163419.1| signal recognition particle subunit ffh/srp54 (srp54) [Cellulophaga
           algicola DSM 14237]
 gi|319420812|gb|ADV47921.1| signal recognition particle subunit FFH/SRP54 (srp54) [Cellulophaga
           algicola DSM 14237]
          Length = 445

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADR 164
           + S  P VIL+ G+ G GKTT  GKL+  +     K  +L A D +R AA+DQL +  ++
Sbjct: 94  NLSGDPSVILMSGLQGSGKTTFSGKLASYLKTKKTKKPLLVACDVYRPAAVDQLLVVGEQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +       +D  A++      A+A   +V+IIDTAGRL  +  +M  I  + + ++ 
Sbjct: 154 IGVEVFSDRGNTDPVAISKAGIAYAKANGHNVVIIDTAGRLAVDEEMMNEIANIHKAIQ- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+DA TGQ+A+   + F+ +    G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDAMTGQDAVNTAKAFNDILNFDGVILTKLDGDTRGGAAISIKSVVNK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE ++ ++ F     +  I G  D
Sbjct: 268 PIKFIGTGEKMDAIDVFYPARMAERILGMGD 298


>gi|303390938|ref|XP_003073699.1| signal recognition particle GTPase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302847|gb|ADM12339.1| signal recognition particle GTPase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 425

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 112/205 (54%), Gaps = 19/205 (9%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-----TSAD 168
           I  VGVNGVGK+T + K+   +    LKV +AA DTFR+ AI+QLK   +R      S  
Sbjct: 219 ICFVGVNGVGKSTSLAKICYWLLKNKLKVYIAACDTFRAGAIEQLKTHVERFQLGGYSVG 278

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F     G D A++A  A ++AQ +  DV++IDTAGR+HN   LM  + K++++ K     
Sbjct: 279 FYQKGYGKDDASVARCAIQEAQHEGYDVILIDTAGRMHNKKNLMMSLTKLMKINK----- 333

Query: 229 APHSVLQVLDATTGQNALRQVEMFH-------AVAGTTGLIMTKMDGT-ARGGGLIPIVV 280
            P  ++ V +A  G ++L  ++ F+        +     +++TK+D    + G ++ +  
Sbjct: 334 -PDHIIYVGEALVGSDSLEHIKEFNRAIKDADQLRNIDSILLTKVDTVDNKIGQILNMAF 392

Query: 281 THKIPVYFLGVGEGINDLEPFVAKD 305
           +   P+ FLGVG+  +DL    ++D
Sbjct: 393 SSNAPILFLGVGQTNSDLSNIGSED 417


>gi|326388656|ref|ZP_08210249.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206907|gb|EGD57731.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 495

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 154/310 (49%), Gaps = 27/310 (8%)

Query: 21  FASTSLKLKEGITDIISSRR--LDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
           F S S +L  G+ D +  R    +D VR  + ++   L+ +D+ + V ++ ++ +  +  
Sbjct: 2   FDSLSDRL-SGVFDRLRGRGALTEDDVRAAMREVRIALLEADVALPVVRRFIDAVTEQAI 60

Query: 76  AKDVSVQRVLYDVS------ELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTT 126
                 Q+VL  V+      +++H  L+ +      D    +  P VI++VG+ G GKTT
Sbjct: 61  G-----QQVLRSVTPGQQVVKIVHDALVEMLGGGTSDLDLAATPPVVIMMVGLQGSGKTT 115

Query: 127 VIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
              K+ K + +  G KV++A+ D  R AA +QL +   +     +    G     +A  A
Sbjct: 116 STAKIGKLLKEKQGKKVLMASLDVNRPAAQEQLAVLGGQVGVATLPIVPGQQPVEIANRA 175

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+ + +DVL++DTAGRLH +  LM  +  +  V       +P   L V+D+ TGQ+A
Sbjct: 176 IQAAKLQAIDVLLLDTAGRLHVDQALMDEMKAVAAV------SSPRETLLVVDSLTGQDA 229

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +   + F      TG+++T+MDG ARGG  + +      P+ F   GE ++ +E F  + 
Sbjct: 230 VNVAQSFAGEVPLTGVVLTRMDGDARGGAALSMRAVTGKPIKFAATGEKLDAIEAFHPER 289

Query: 306 FSAVITGCLD 315
            ++ I G  D
Sbjct: 290 VASRILGMGD 299


>gi|269127630|ref|YP_003301000.1| signal recognition particle protein [Thermomonospora curvata DSM
           43183]
 gi|268312588|gb|ACY98962.1| signal recognition particle protein [Thermomonospora curvata DSM
           43183]
          Length = 524

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 22/294 (7%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT  F+S   K +    DI ++ R       E+   L+ +D+ + V +  +  +  +  
Sbjct: 8   RLTSVFSSLRSKGRLSEADINATAR-------EIRIALLEADVALPVVKDFIAHVKERAL 60

Query: 76  AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +VS      Q+V+  V+E + ++L   ++   +  +  P VI++ G+ G GKTT+ GK
Sbjct: 61  GAEVSQALNPAQQVVKIVNEELIEILGGETRRLRFAKTP-PTVIMLAGLQGAGKTTLAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L+  +   G   +L A D  R  A+ QL++  +R        E G+   D   +A  + +
Sbjct: 120 LAYWLKGQGHTPLLVAADLQRPNAVQQLQVMGERAGVPVFAPEPGNGVGDPVQVARRSVE 179

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+  + DV+IIDTAGRL  ++ +M       + +   D  +P  +L V+DA  GQ+A+ 
Sbjct: 180 EARRAQHDVVIIDTAGRLGVDAEMMQ------QAIDIRDAVSPDEILFVVDAMVGQDAVN 233

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             + F    G  G+++TK+DG ARGG  + +      P+ F   GE + D + F
Sbjct: 234 TAQAFMDGVGFDGVVLTKLDGDARGGAALSVRHITGRPIMFASTGEKLEDFDLF 287


>gi|156055398|ref|XP_001593623.1| hypothetical protein SS1G_05051 [Sclerotinia sclerotiorum 1980]
 gi|154702835|gb|EDO02574.1| hypothetical protein SS1G_05051 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 660

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 40/289 (13%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQ-RVLYDVSELIHKMLMP----- 98
           +ED L+R ++    A ++ E    EL+  +     SVQ R+   +   + K+L P     
Sbjct: 369 MEDHLLRKNVAREAAMRLCEGVERELIGVKTGSFESVQARIATAMESSLRKILTPTSSLD 428

Query: 99  --------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
                   +S P       RP+V+ +VGVNGVGK+T + K+   +     KV++ A DTF
Sbjct: 429 LLREIDAVVSPPALSLKKKRPYVMSIVGVNGVGKSTNLSKICYFLLQNKYKVLVVACDTF 488

Query: 151 RSAAIDQLKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           RS A++QL +   R   +    E           G DAA +A ++   A  +  DV++ID
Sbjct: 489 RSGAVEQLAVHV-RNLKELTAREGGQVELYQKGYGKDAANVAKDSVSFAAQEGYDVVLID 547

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +  +      P  +L V +A  G +++ Q   F+A  G   
Sbjct: 548 TAGRRHNDQRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGQGR 601

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
              G I++K D      G L+ +V    +PV F+GVG+  +DL     K
Sbjct: 602 SLDGFIISKCDTVGDMVGTLVSMVHATNVPVLFVGVGQHYSDLRNLSVK 650


>gi|313885966|ref|ZP_07819704.1| signal recognition particle protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924496|gb|EFR35267.1| signal recognition particle protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 446

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 143/313 (45%), Gaps = 25/313 (7%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE L    K+ KG  S        IT+I  +  L D VR  L D    +D+   VA+   
Sbjct: 6   SERLERSFKILKGQGS--------ITEINVAETLKD-VRRALLD----ADVNYNVARDFT 52

Query: 68  EELLTKRYAKDV--SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVG 123
            ++  K   +DV  SV      V +L+H  L  L  S+    +    P +IL+ G+ G G
Sbjct: 53  NQVKEKALGQDVLTSVNPGQMMV-KLVHDELATLMGSEAVAINLKGSPAIILMSGLQGSG 111

Query: 124 KTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT  GKL+  +      K +L A D +R AAI QL +  ++            D   +A
Sbjct: 112 KTTFSGKLANMLKKQEQRKPLLVACDVYRPAAIQQLHVLGEQIGVPVYSEPDSKDPVQIA 171

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             A   AQ + +D +IIDTAGRL  +  +M  I  +   ++      P   L V+D+ TG
Sbjct: 172 RNAIAHAQQEGLDTVIIDTAGRLAVDEEMMNEISSIKDAIR------PDETLFVVDSMTG 225

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+     F       G+I+TK+DG +RGG  + I      P+ F+G GE +  L+ F 
Sbjct: 226 QDAVNTAAEFDKRLDFDGVILTKLDGDSRGGAALSIRSVVNKPIKFVGTGEKMEALQVFH 285

Query: 303 AKDFSAVITGCLD 315
               +  I G  D
Sbjct: 286 PSRMADRILGMGD 298


>gi|297183607|gb|ADI19734.1| hypothetical protein [uncultured bacterium EB000_36F02]
          Length = 452

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 160/331 (48%), Gaps = 37/331 (11%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT  F      LK+  +  +  +++D+G+R  +   L+ +D+ + VA++ ++ +  
Sbjct: 1   MFENLTNKFEEIFSSLKKSPS--LDEKQVDEGLRN-IRQALLEADVSLTVAKEFIDNIKP 57

Query: 73  KRYAKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K   +++         V +++YD  EL+ K+L   +   N + +  P  +++VG+ G GK
Sbjct: 58  KALGQEIVRSTSPGQMVVKIVYD--ELV-KLLGENNSEINLN-AVPPVPMMLVGLQGSGK 113

Query: 125 TTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAAL 181
           TT   KL+K +  +   K+M+ + D +R AA +QLK   ++   + +   +  D   A +
Sbjct: 114 TTTTAKLAKYLEINKKKKIMMVSLDVYRPAAQEQLKSLGEQN--NILTLPVIEDQLPADI 171

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
              A   A     ++++ DTAGR   +  +M+ I ++  ++       P  +  V D+ T
Sbjct: 172 CRRAVSAANLNGAEIILFDTAGRTQIDLQMMSEIKQIESIIN------PTEIFLVADSLT 225

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ A    + F      TG+I+T+ DG ARGG  + +    ++P+ FLG+GE IN++E F
Sbjct: 226 GQVAAEVAKEFKNTVNLTGIILTRADGDARGGAAVSMKYVSQVPIKFLGIGEKINNIEVF 285

Query: 302 VAKDFSAVITG-----------CLDYGEEKI 321
                +  I G             D GEE I
Sbjct: 286 HPDRIANRILGMGDIVTLVEKAAQDLGEENI 316


>gi|254852709|ref|ZP_05242057.1| signal recognition particle protein [Listeria monocytogenes FSL
           R2-503]
 gi|258606030|gb|EEW18638.1| signal recognition particle protein [Listeria monocytogenes FSL
           R2-503]
          Length = 467

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+ + +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  LE F     ++ I G  D
Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300


>gi|332299387|ref|YP_004441308.1| signal recognition particle protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176450|gb|AEE12140.1| signal recognition particle protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 446

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 143/313 (45%), Gaps = 25/313 (7%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE L    K+ KG  S        IT+I  +  L D VR  L D    +D+   VA+   
Sbjct: 6   SERLERSFKILKGQGS--------ITEINVAETLKD-VRRALLD----ADVNYNVARDFT 52

Query: 68  EELLTKRYAKDV--SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVG 123
            ++  K   +DV  SV      V +L+H  L  L  S+    +    P +IL+ G+ G G
Sbjct: 53  NQVKEKALGQDVLTSVNPGQMMV-KLVHDELATLMGSEAVAINLKGSPAIILMSGLQGSG 111

Query: 124 KTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT  GKL+  +      K +L A D +R AAI QL +  ++            D   +A
Sbjct: 112 KTTFSGKLANMLKKQEQRKPLLVACDVYRPAAIQQLHVLGEQIGVPVYSEPDSKDPVQIA 171

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             A   AQ + +D +IIDTAGRL  +  +M  I  +   ++      P   L V+D+ TG
Sbjct: 172 RNAIAHAQQEGLDTVIIDTAGRLAVDEEMMNEISSIKDAIR------PDETLFVVDSMTG 225

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+     F       G+I+TK+DG +RGG  + I      P+ F+G GE +  L+ F 
Sbjct: 226 QDAVNTAAEFDKRLDFDGVILTKLDGDSRGGAALSIRSVVNKPIKFVGTGEKMEALQVFH 285

Query: 303 AKDFSAVITGCLD 315
               +  I G  D
Sbjct: 286 PSRMADRILGMGD 298


>gi|255660175|ref|ZP_05405584.1| signal recognition particle protein [Mycoplasma genitalium G37]
          Length = 416

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 111/220 (50%), Gaps = 12/220 (5%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQ 157
           LS+P       RP  I++VG+ G GKTT  GKL+  +      K ML   D +R AAI+Q
Sbjct: 49  LSQPNQELNEKRPLKIMMVGLQGSGKTTTCGKLAYWLEKKYKQKTMLVGLDIYRPAAIEQ 108

Query: 158 LKIWADRTSADFVC--SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           L+  + +T++ F    ++  +     A  AFK A   K   +I DTAGRL  N  LM   
Sbjct: 109 LETLSQQTNSVFFAQGTQPVAKTTKAALSAFKTA---KCQTIICDTAGRLQTNETLM--- 162

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +++ V   L+P     ++ V+D  +GQ  +   + FH     TG I++K+D  AR G  
Sbjct: 163 DELVSVKNELNPD---EIIMVVDGLSGQEIINVAQTFHKRLKLTGFIISKLDSDARAGAA 219

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + +    ++P+  +GV E ++ LE F  +  +  I G  D
Sbjct: 220 LSLASLLQVPIKLIGVSEKLDGLEQFHPERIANRILGLGD 259


>gi|149371680|ref|ZP_01891096.1| signal recognition particle protein [unidentified eubacterium
           SCB49]
 gi|149355307|gb|EDM43867.1| signal recognition particle protein [unidentified eubacterium
           SCB49]
          Length = 442

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+  + S    K +L A D +R AAI+QL +  ++   + 
Sbjct: 99  PSVILMSGLQGSGKTTFSGKLANFLKSKKTKKPLLVACDVYRPAAINQLHVVGEQIGVEV 158

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
              E   D  ++A  A   A+    +V+I+DTAGRL  +  +M  I  + + ++      
Sbjct: 159 YSEEGNMDPVSIATNAIAHAKQNGHNVVIVDTAGRLAVDEAMMVEIENVHKAIQ------ 212

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA TGQ+A+   + F+      G+++TK+DG  RGG  I I      P+ F+
Sbjct: 213 PQETLFVVDAMTGQDAVNTAKTFNERINFDGVVLTKLDGDTRGGAAISIKSVVNKPIKFI 272

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE ++ ++ F     +  I G  D
Sbjct: 273 GTGEKMDAIDIFYPSRMADRILGMGD 298


>gi|82594110|ref|XP_725288.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480234|gb|EAA16853.1| similar to RIKEN cDNA 1300011P19 gene [Plasmodium yoelii yoelii]
          Length = 524

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 113/205 (55%), Gaps = 20/205 (9%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           + + I  +GVNGVGK+T + K+   +   G LK+M+AA DTFR+ AI+QL+I A      
Sbjct: 317 KLYSICFLGVNGVGKSTNLAKVCYYLKTKGNLKIMIAACDTFRAGAIEQLRIHAKCLDVY 376

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                 G +AA +A +A   A+ +K DV++IDTAGR+ +N  LM  +GK+I +      +
Sbjct: 377 LFEKGYGKNAAGIAKDAISYAKKEKYDVILIDTAGRMQDNEPLMRSLGKLILI------N 430

Query: 229 APHSVLQVLDATTGQNALRQVEMFH-----AVAGT-----TGLIMTKMDGTAR--GGGLI 276
            P  +L V +A  G +A+ Q++ F+     A   T      G+++TK D      G  L 
Sbjct: 431 NPDLILFVGEALVGNDAIDQLKKFNQTLIDATCDTHKRTIDGIVLTKFDTVDDKVGTALS 490

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            + +T K P+ F+GVG+    L+ F
Sbjct: 491 MVYLTGK-PIVFVGVGQKYTHLKKF 514


>gi|169609444|ref|XP_001798141.1| hypothetical protein SNOG_07814 [Phaeosphaeria nodorum SN15]
 gi|160701846|gb|EAT85280.2| hypothetical protein SNOG_07814 [Phaeosphaeria nodorum SN15]
          Length = 567

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 20/205 (9%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA----- 162
           S RP+V+ +VGVNGVGK+T + K++  +     +V++AA DTFRS A++QL++       
Sbjct: 355 SPRPYVLSIVGVNGVGKSTNLSKIAFFLLQNHHRVLIAAADTFRSGAVEQLRVHVKNLQE 414

Query: 163 ----DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
               +    D      G DAA +A +A   AQ    +V++IDTAGR HN+  LM+ + K 
Sbjct: 415 LSKREGGEVDLFEKGYGKDAANIAADAVTHAQKNGFNVVLIDTAGRRHNDQRLMSSLEKF 474

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARG-G 273
            ++        P  +L V +A  G +++ Q   F+A  G      G +++K D      G
Sbjct: 475 AKLAN------PDKILMVGEALVGTDSVAQARNFNASFGAGRKLDGFVISKCDTVGDMVG 528

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDL 298
            L+ +V    IPV FLG G+  +DL
Sbjct: 529 TLVSMVHATGIPVVFLGTGQHYSDL 553


>gi|157738182|ref|YP_001490866.1| signal recognition particle protein [Arcobacter butzleri RM4018]
 gi|157700036|gb|ABV68196.1| signal recognition particle protein [Arcobacter butzleri RM4018]
          Length = 450

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 6/195 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P  IL+ G+ G GKTT  GKL+  +     KV++AA D  R AA++QLK  A +   
Sbjct: 91  STPPTTILMTGLQGSGKTTTTGKLANYLKIRKKKVLVAACDLQRLAAVEQLKQIAAQIEV 150

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           D    +   +   +A +A ++A  +  DV +IDTAGRL  +  LM    K ++ +K  D 
Sbjct: 151 DIYFDDNEKNPVKIALKAKEKAIKEHYDVFLIDTAGRLAIDEELM----KQLKDIK--DA 204

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ +  V D+ TG +A +    F    G  G+I++K DG  +GG  + I    ++P+ 
Sbjct: 205 INPNEIFYVADSLTGHDATKTAITFKEKIGIDGVILSKYDGDTKGGVALSIANQVEVPLR 264

Query: 288 FLGVGEGINDLEPFV 302
           F+G+GE + DLE F+
Sbjct: 265 FIGIGEKMPDLEVFI 279


>gi|295103451|emb|CBL00995.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Faecalibacterium prausnitzii SL3/3]
          Length = 451

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 138/275 (50%), Gaps = 16/275 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+   VA+    ++  +   ++V       Q+V+  V+E +   LM  S+ 
Sbjct: 34  EVRMALLEADVNYKVAKDFCAKVSERAMGQEVMESLTPAQQVVKIVNEELVA-LMGGSEA 92

Query: 103 FNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
              +  ++   VI++ G+ G GKTT   KL+K     G + ML A D +R AAIDQL++ 
Sbjct: 93  ARLNIKNKGQTVIMLCGLQGNGKTTHAAKLAKFYIKQGRRPMLVACDIYRPAAIDQLQVV 152

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +  A  V +  G+    +A +A   A+    D++I+DTAGRL  + +LM       + 
Sbjct: 153 GKQAGAP-VFTLPGAKPPEIARKALAHAKDYGNDIIILDTAGRLQIDEVLM-------QE 204

Query: 222 LKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           L  +    P    L V+DA  GQ+A+   + F+   G  G+I+TK DG  RGG  + ++ 
Sbjct: 205 LVDIKAAVPVDETLLVVDAMAGQDAVNVAKTFNETVGVDGIILTKTDGDTRGGAALSVLA 264

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+ F G GE ++DL+ F     ++ I G  D
Sbjct: 265 VTGKPIKFQGTGEKLDDLDVFHPDRMASRILGMGD 299


>gi|67459498|ref|YP_247122.1| Signal recognition particle protein [Rickettsia felis URRWXCal2]
 gi|67005031|gb|AAY61957.1| Signal recognition particle protein [Rickettsia felis URRWXCal2]
          Length = 487

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 148/290 (51%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89
           I++  ++D  +R+ +   L+ SD+ + V +  + E+  K   ++V  SV   Q ++  + 
Sbjct: 59  ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 117

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P V  L+VG+ G GKTT   KL+ ++ +   KV+L + D
Sbjct: 118 EEMINLLASSESETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLKNQNKKVLLVSLD 177

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL I A+    + +    G     +   A  +A+     V+I DTAGR   +
Sbjct: 178 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYGVVIYDTAGRTQID 237

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M     + ++++      P   L V+D+ TGQ+A+     F+     +GLI++++DG
Sbjct: 238 KEMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTANSFNEKLEISGLILSRIDG 291

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            ++GG  + +    K P+ FL  GE + DLE F A+  ++ I   LD G+
Sbjct: 292 DSKGGAALSVKYITKKPIKFLSSGEKLTDLEEFDAERLASRI---LDMGD 338


>gi|307294709|ref|ZP_07574551.1| signal recognition particle protein [Sphingobium chlorophenolicum
           L-1]
 gi|306879183|gb|EFN10401.1| signal recognition particle protein [Sphingobium chlorophenolicum
           L-1]
          Length = 482

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 146/283 (51%), Gaps = 16/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIH 93
           +D VR  + ++   L+ +D+ + V ++ V++   +    DV  SV   Q V+  VS+ + 
Sbjct: 24  EDDVRAAMREVRIALLEADVALPVVRQFVDQATERAVGSDVLRSVTPGQMVVKIVSDTLT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRS 152
           + L   +     D +  P VI++VG+ G GKTT   K++K++ +   K V++A+ D  R 
Sbjct: 84  ETLGAETSDLLIDVTP-PAVIMMVGLQGSGKTTSTAKIAKRLKEKERKKVLMASLDVQRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA +QL +   +T    +    G     +A  A + A+ +  DV+++DTAGRLH +  LM
Sbjct: 143 AAQEQLAVLGTQTDVATLPIVPGQQPVEIAKRALQAAKLQGFDVVMLDTAGRLHVDQALM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +  +  V        P  +L V+D+ TGQ+A+     F +    TG+++T+MDG ARG
Sbjct: 203 DEMKAVAEV------SNPAEILLVVDSLTGQDAVNVATSFTSQVPLTGVVLTRMDGDARG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F G GE ++ +EPF     +  I G  D
Sbjct: 257 GAALSMRAVTGRPIKFAGTGEKLDAIEPFHPARVAQRILGMGD 299


>gi|300120716|emb|CBK20270.2| unnamed protein product [Blastocystis hominis]
          Length = 565

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 106/203 (52%), Gaps = 17/203 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+  GVNGVGK+T + K++      GL+V+LAA DT+RS A++QL++  DR   D     
Sbjct: 362 IVFCGVNGVGKSTSLSKVAYYFKSKGLRVLLAACDTYRSGAVEQLRVHVDRLGLDLFERG 421

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D + +AY A + A  +  DV +IDTAGR+ NN  LM  + K++ V      + P  +
Sbjct: 422 YTKDPSDVAYYALRYANEQGFDVCLIDTAGRMQNNEGLMRSLVKLVNV------NHPDLI 475

Query: 234 LQVLDATTGQNALRQVEMF----HAVAG------TTGLIMTKMDGT-ARGGGLIPIVVTH 282
           L V +A  G + + Q+  F    H ++         G+++TK D    + G  + +V   
Sbjct: 476 LFVGEALVGNDGVDQLREFNRALHDLSDLAEPRLVDGIVLTKFDTIDDKVGAALSMVYCT 535

Query: 283 KIPVYFLGVGEGINDLEPFVAKD 305
             P+ F+G G+   +L+    KD
Sbjct: 536 GKPIVFVGTGQKYTNLKRLNVKD 558


>gi|281420783|ref|ZP_06251782.1| signal recognition particle protein [Prevotella copri DSM 18205]
 gi|281405075|gb|EFB35755.1| signal recognition particle protein [Prevotella copri DSM 18205]
          Length = 450

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 108/209 (51%), Gaps = 8/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           SH P VIL+ G+ G GKTT  GKL+  + +  G K +L A D +R AAI QL +  ++  
Sbjct: 97  SH-PAVILMSGLQGSGKTTFSGKLANMLKTKKGKKPLLVACDVYRPAAIQQLHVVGEQVG 155

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                     D  ++A  A +QA+    DV+I+DTAGRL  +  +M  I  +   L+   
Sbjct: 156 VPVYSEPENKDVLSIADHAIQQAKTNGNDVVIVDTAGRLAIDEQMMNEISNLKNHLR--- 212

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I      P+
Sbjct: 213 ---PDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAALSIRTVVTKPI 269

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G GE ++ ++ F     +  I G  D
Sbjct: 270 KFIGTGEKMDAIDVFHPARMADRILGMGD 298


>gi|145610183|ref|XP_366587.2| hypothetical protein MGG_02663 [Magnaporthe oryzae 70-15]
 gi|145017543|gb|EDK01906.1| hypothetical protein MGG_02663 [Magnaporthe oryzae 70-15]
          Length = 623

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 139/281 (49%), Gaps = 31/281 (11%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           RL +GV +EL  +   S   +    +   E    R     S   +L ++  +    +  L
Sbjct: 348 RLCEGVEKELVGVKTGSFESINTRVQAAMEASLTRMLTPTSSLDLLREIDSVTQPSVTSL 407

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            KP       RP+V+ +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++QL 
Sbjct: 408 RKP-------RPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQLA 460

Query: 160 IWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +   R   +    E           G DAAA+A +A   A  +  DV++IDTAGR HN+ 
Sbjct: 461 VHV-RNLKELTAREGGQVELYQKGYGKDAAAVAKDAVSHAAQEGFDVVLIDTAGRRHNDQ 519

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTK 265
            LM+ + K  +  +      P  +L V +A  G +++ Q   F+A  G+     G I++K
Sbjct: 520 RLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGSGRSLDGFIISK 573

Query: 266 MD--GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            D  GT   G L+ IV    +PV F+GVG+  +DL  F  K
Sbjct: 574 CDTVGTMV-GTLVSIVHATNVPVLFVGVGQHYSDLRNFSVK 613


>gi|134102494|ref|YP_001108155.1| signal recognition particle GTPase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291004115|ref|ZP_06562088.1| signal recognition particle protein [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915117|emb|CAM05230.1| signal recognition particle GTPase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 518

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 138/281 (49%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +  + +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRSFIAGVKERAKSAEVSQALNPAQQVIKIVNEELVGILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P VI++ G+ G GKTT+ GKL++ +   G   ML A D  R  A++Q
Sbjct: 88  GETRRLEYAKTP-PTVIMLAGLQGSGKTTLAGKLARWLQGQGHTPMLVAADLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        E G+   D   ++  +  +A+  + D++I+DTAGRL  +  +M  
Sbjct: 147 LQVVGERAGVAVFAPEPGNGVGDPVDVSRRSIDEARRAQHDIVIVDTAGRLGIDQEMMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +   +K      P   L V+DA  GQ+A+   E F    G +G+++TK+DG ARGG 
Sbjct: 207 AADIRDAVK------PDETLFVVDAMIGQDAVSTAEAFRDGVGFSGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F   GE + D + F     ++ I G  D
Sbjct: 261 ALSVRQVTGQPIMFASNGEKLEDFDVFHPDRMASRILGMGD 301


>gi|254461491|ref|ZP_05074907.1| signal recognition particle protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206678080|gb|EDZ42567.1| signal recognition particle protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 502

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 139/269 (51%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V+ +  K   + V+      Q+V+  V + +  +L    +P     
Sbjct: 38  LLEADVSLPVARDFVKAVQEKATGQAVTKSITPGQQVVKIVHDELQHVLRGEGEPGELKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT  GKL+K++S+  G +V++A+ D +R AA  QL I   +  
Sbjct: 98  DNAPAPILMVGLQGGGKTTTTGKLAKRLSEKNGKRVLMASLDIYRPAAQQQLAILGTQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G  A  +A  A +QA     DV ++DTAGRL  +  LM  + + +R     D
Sbjct: 158 VDTLPIVAGESAVQIAKRAKQQATLGGYDVYMLDTAGRLQIDETLMKEV-EDVR-----D 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ A+   E F    G +G+++T+MDG  RGG  + +      P+
Sbjct: 212 AVNPRETLLVVDGLTGQVAVEVAEEFDGKIGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+G+GE ++ LE F  +  +  I G  D
Sbjct: 272 KFVGMGEKMDALETFEPERVAGRILGMGD 300


>gi|238759639|ref|ZP_04620800.1| Cell division protein ftsY [Yersinia aldovae ATCC 35236]
 gi|238702182|gb|EEP94738.1| Cell division protein ftsY [Yersinia aldovae ATCC 35236]
          Length = 372

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 102/174 (58%), Gaps = 12/174 (6%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  L     
Sbjct: 205 RLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITSLTEHAS 264

Query: 76  AKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIG 129
            K +     LY     ++SE++ K+  PL      D S + P VIL+VGVNGVGKTT IG
Sbjct: 265 RKQLKDAEALYGKLKEEMSEILSKVDKPL------DVSGKNPFVILMVGVNGVGKTTTIG 318

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KL+++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A++ +
Sbjct: 319 KLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVYF 372


>gi|256379924|ref|YP_003103584.1| signal recognition particle protein [Actinosynnema mirum DSM 43827]
 gi|255924227|gb|ACU39738.1| signal recognition particle protein [Actinosynnema mirum DSM 43827]
          Length = 518

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  + ++  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRVALLEADVALPVVRAFIAKVKERAKGAEVSQALNPAQQVIKIVNEELVAILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++  N    + P VI++ G+ G GKTT+ GKL+K +   G   +L A D  R  A+ Q
Sbjct: 88  GETRRINL-AKNPPSVIMLAGLQGAGKTTLAGKLAKWLRGQGHTPLLVACDLQRPNAVTQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        E G+   D   +A    ++A+  + D++++DTAGRL  +  +M  
Sbjct: 147 LQVVGERAGVSVFAPEPGNGVGDPVDVAKRGVEEAKRAQHDIVVVDTAGRLGVDEEMMRQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +   +       P  VL V+DA  GQ+A+     F    G TG+++TK+DG ARGG 
Sbjct: 207 AADIRAAVN------PDEVLFVVDAMIGQDAVNTATAFSEGVGFTGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F   GE + D + F     ++ I G  D
Sbjct: 261 ALSVREVTGQPILFASNGEKLEDFDVFHPDRMASRILGMGD 301


>gi|16803841|ref|NP_465326.1| hypothetical protein lmo1801 [Listeria monocytogenes EGD-e]
 gi|47097384|ref|ZP_00234935.1| signal recognition particle protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|224500031|ref|ZP_03668380.1| hypothetical protein LmonF1_10289 [Listeria monocytogenes Finland
           1988]
 gi|224501398|ref|ZP_03669705.1| hypothetical protein LmonFR_02565 [Listeria monocytogenes FSL
           R2-561]
 gi|254831598|ref|ZP_05236253.1| hypothetical protein Lmon1_09603 [Listeria monocytogenes 10403S]
 gi|254899502|ref|ZP_05259426.1| hypothetical protein LmonJ_06799 [Listeria monocytogenes J0161]
 gi|254912359|ref|ZP_05262371.1| signal recognition particle protein [Listeria monocytogenes J2818]
 gi|254936686|ref|ZP_05268383.1| signal recognition particle protein [Listeria monocytogenes F6900]
 gi|284802247|ref|YP_003414112.1| hypothetical protein LM5578_2003 [Listeria monocytogenes 08-5578]
 gi|284995389|ref|YP_003417157.1| hypothetical protein LM5923_1954 [Listeria monocytogenes 08-5923]
 gi|16411255|emb|CAC99879.1| ffh [Listeria monocytogenes EGD-e]
 gi|47014232|gb|EAL05214.1| signal recognition particle protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|258609282|gb|EEW21890.1| signal recognition particle protein [Listeria monocytogenes F6900]
 gi|284057809|gb|ADB68750.1| hypothetical protein LM5578_2003 [Listeria monocytogenes 08-5578]
 gi|284060856|gb|ADB71795.1| hypothetical protein LM5923_1954 [Listeria monocytogenes 08-5923]
 gi|293590340|gb|EFF98674.1| signal recognition particle protein [Listeria monocytogenes J2818]
          Length = 450

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+ + +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  LE F     ++ I G  D
Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300


>gi|307108511|gb|EFN56751.1| hypothetical protein CHLNCDRAFT_48710 [Chlorella variabilis]
          Length = 415

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 145/290 (50%), Gaps = 35/290 (12%)

Query: 53  LIRSDIGVAVAQKIVEEL----LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L+ +D+ + V ++ V+++    L +R  K +S  + L  V     K LM   +       
Sbjct: 51  LLEADVSLPVVRRFVKKVEDAALGERVVKGLSPDQKLTKVVYEELKSLMGGEQAELVQPK 110

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           + P VIL+ G+ G GKTT  GKL+  +   GLKV+L A D +R AAIDQL     +    
Sbjct: 111 YGPSVILMAGLQGTGKTTAAGKLALYLKKKGLKVLLVATDVYRPAAIDQLVTLGGKIEVP 170

Query: 169 FVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
               E+G+  A   +A +  ++A+A++ D +I+DTAGRL  +  LMA + +   V++   
Sbjct: 171 VF--ELGTQVAPPEIARQGLEKAKAEEYDAVIVDTAGRLQIDDRLMAELRETKEVVQ--- 225

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI---VVTHK 283
              P   L V+DA TGQ A   V+ F+     TG ++TKMDG +RGG  + I   ++   
Sbjct: 226 ---PTDTLLVVDAMTGQEAAGLVKAFNEAVDITGAVLTKMDGDSRGGAALSIKEAILCFN 282

Query: 284 I------------------PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +                  P+ F+G GE +  LEPF  +  ++ I G  D
Sbjct: 283 VFGDDCSSPPWRCLQVSGRPIKFVGTGEKMEALEPFFPERMASRILGMGD 332


>gi|149209827|ref|XP_001522288.1| hypothetical protein MGCH7_ch7g395 [Magnaporthe oryzae 70-15]
 gi|86196350|gb|EAQ70988.1| hypothetical protein MGCH7_ch7g395 [Magnaporthe oryzae 70-15]
          Length = 640

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 139/281 (49%), Gaps = 31/281 (11%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           RL +GV +EL  +   S   +    +   E    R     S   +L ++  +    +  L
Sbjct: 365 RLCEGVEKELVGVKTGSFESINTRVQAAMEASLTRMLTPTSSLDLLREIDSVTQPSVTSL 424

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            KP       RP+V+ +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++QL 
Sbjct: 425 RKP-------RPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQLA 477

Query: 160 IWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +   R   +    E           G DAAA+A +A   A  +  DV++IDTAGR HN+ 
Sbjct: 478 VHV-RNLKELTAREGGQVELYQKGYGKDAAAVAKDAVSHAAQEGFDVVLIDTAGRRHNDQ 536

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTK 265
            LM+ + K  +  +      P  +L V +A  G +++ Q   F+A  G+     G I++K
Sbjct: 537 RLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGSGRSLDGFIISK 590

Query: 266 MD--GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            D  GT   G L+ IV    +PV F+GVG+  +DL  F  K
Sbjct: 591 CDTVGTMV-GTLVSIVHATNVPVLFVGVGQHYSDLRNFSVK 630


>gi|56551971|ref|YP_162810.1| signal recognition particle protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761945|ref|ZP_04760030.1| signal recognition particle protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752484|ref|YP_003225377.1| signal recognition particle protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56543545|gb|AAV89699.1| signal recognition particle protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373625|gb|EER63197.1| signal recognition particle protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258551847|gb|ACV74793.1| signal recognition particle protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 474

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 146/292 (50%), Gaps = 19/292 (6%)

Query: 21  FASTSLKLKEGITDIISSR--RLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRY 75
           F S S +L  G+ D +  R    +D VR+ + ++   L+ +D+ + V +  V ++  K  
Sbjct: 2   FGSLSERL-SGVFDRLRGRGALTEDDVRQAMREVRIALLEADVALPVVRDFVSKITEKAI 60

Query: 76  AKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V  SV   Q+V+  V + + +ML   +   N   +  P VIL+VG+ G GKTT   K
Sbjct: 61  GHNVLKSVTPGQQVVKIVYDALVEMLGSDTSDLNLAVNP-PAVILMVGLQGSGKTTTSAK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L KK+ +   K V++A+ D  R AA +QL     +     +    G     +A  A   A
Sbjct: 120 LGKKLKEKDHKKVLMASLDVHRPAAQEQLATLGQQADVPTLPIIAGQQPVEIAQRALTSA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV+I+DTAGRLH + +LM  +  +       D   P   L V+DA  GQ+A+   
Sbjct: 180 RLQGYDVVILDTAGRLHIDQLLMDEMKAVA------DSSQPAETLLVVDALAGQDAVNIA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             F      TG+I+T+MDG ARGG  + +      P+ F+G  E ++ L PF
Sbjct: 234 RSFSEQVDLTGVILTRMDGDARGGAALSMRAVTGKPIKFVGTSEKLDGLSPF 285


>gi|147733507|sp|Q4UKH4|SRP54_RICFE RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
          Length = 449

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 148/290 (51%), Gaps = 16/290 (5%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVS 89
           I++  ++D  +R+ +   L+ SD+ + V +  + E+  K   ++V  SV   Q ++  + 
Sbjct: 21  ILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIH 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +  +L         + + +P V  L+VG+ G GKTT   KL+ ++ +   KV+L + D
Sbjct: 80  EEMINLLASSESETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLKNQNKKVLLVSLD 139

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA +QL I A+    + +    G     +   A  +A+     V+I DTAGR   +
Sbjct: 140 TYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEAKISAYGVVIYDTAGRTQID 199

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M     + ++++      P   L V+D+ TGQ+A+     F+     +GLI++++DG
Sbjct: 200 KEMMEEALAIKKIVE------PTETLLVIDSMTGQDAVVTANSFNEKLEISGLILSRIDG 253

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            ++GG  + +    K P+ FL  GE + DLE F A+  ++ I   LD G+
Sbjct: 254 DSKGGAALSVKYITKKPIKFLSSGEKLTDLEEFDAERLASRI---LDMGD 300


>gi|222823997|ref|YP_002575571.1| signal recognition particle protein [Campylobacter lari RM2100]
 gi|222539219|gb|ACM64320.1| signal recognition particle protein [Campylobacter lari RM2100]
          Length = 445

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 105/195 (53%), Gaps = 6/195 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P V+L+ G+ G GKTT   K++  +     KV++AA D  R AA++QL+        
Sbjct: 92  SKPPTVVLMCGLQGGGKTTTTVKIANYLKLRNKKVLIAACDLQRLAAVEQLRQLTQANEL 151

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           D    E  ++   +A +A ++A+    DVL++DTAGRL  ++ LM  + ++  +L     
Sbjct: 152 DLFFIENENNPLNVAKQALEKAKNSMYDVLLVDTAGRLAIDTALMNELKEVKAILN---- 207

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  V  V DA +GQ+ ++    F+     TG+I++K D   +GG  + I     +P+ 
Sbjct: 208 --PDEVFYVADAMSGQDGVKTASSFNEALEITGVILSKFDADTKGGVALGIAKQIGVPLR 265

Query: 288 FLGVGEGINDLEPFV 302
           F+GVGE + DLE F+
Sbjct: 266 FIGVGEKVADLEVFI 280


>gi|171918534|gb|ACB58647.1| signal recognition particle protein [Veillonella dispar]
          Length = 222

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 103/203 (50%), Gaps = 7/203 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    + +      
Sbjct: 1   IMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDM 60

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A  +  +   QA+  + D ++IDTAGRL  +  LM      +R +K L    P+ 
Sbjct: 61  GTEHSAVEIVSQGLAQAKENRNDYVLIDTAGRLQIDEKLMT----ELRDIKAL--ANPNE 114

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+D+  GQ A      F+     TG+I+TK+DG  RGG  + +      P+ F G G
Sbjct: 115 ILLVVDSMIGQEAANVAREFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTG 174

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E I D+E F     S+ I G  D
Sbjct: 175 EKITDIETFHPDRMSSRILGMGD 197


>gi|154491073|ref|ZP_02031014.1| hypothetical protein PARMER_00992 [Parabacteroides merdae ATCC
           43184]
 gi|154088821|gb|EDN87865.1| hypothetical protein PARMER_00992 [Parabacteroides merdae ATCC
           43184]
          Length = 441

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 154/314 (49%), Gaps = 27/314 (8%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEG-ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           SE L    KL KG         EG IT+I  +  L D VR+ L D    +D+   VA+  
Sbjct: 6   SERLDRSFKLLKG---------EGKITEINVAETLKD-VRKALLD----ADVNYKVAKGF 51

Query: 67  VEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGV 122
            + +  K   ++V  SV+     V +++H  L  L      + D    P +IL+ G+ G 
Sbjct: 52  TDTVKAKALGQNVLTSVKPSQLMV-KIVHDELADLMGGTATDLDLKGSPAIILMSGLQGS 110

Query: 123 GKTTVIGKLSKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           GKTT  GKL+  +     K  L AA D +R AAI+QL++  ++            +  A+
Sbjct: 111 GKTTFSGKLANLLKTKKNKKPLLAACDVYRPAAIEQLRVVGEQVGVPVYMELENKNPVAI 170

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A  A ++A+AK  DV+I+DTAGRL  +  +M  I  +   ++      P   L V+D+ T
Sbjct: 171 AMNAIREARAKGNDVVIVDTAGRLAIDEQMMKEIAAIKSAIQ------PDETLFVVDSMT 224

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+A+   + F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F
Sbjct: 225 GQDAVNTAKEFNERLDFDGVVLTKLDGDTRGGAALSIRTVVDKPIKFVGTGEKMDALDIF 284

Query: 302 VAKDFSAVITGCLD 315
             +  +  I G  D
Sbjct: 285 HPERMADRILGMGD 298


>gi|145545839|ref|XP_001458603.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426424|emb|CAK91206.1| unnamed protein product [Paramecium tetraurelia]
          Length = 585

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 145/293 (49%), Gaps = 32/293 (10%)

Query: 27  KLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSV 81
           KL   I ++  +++L +     V ++ ++ L++ ++   +AQK+V+ + T   A K  + 
Sbjct: 280 KLTGKIQNLTGNKQLTEEDLLPVLDDFKNALMQKNVAEEIAQKLVDSIKTNLLATKTKAF 339

Query: 82  QRVLYDVSELIH----KMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           Q +   V E +     ++L P      +++        +P+VI+++GVNGVGK+T + KL
Sbjct: 340 QSIRTSVQEAMKSTLTRILTPNRHIDIIAEALRAKEKQKPYVIVIIGVNGVGKSTTLAKL 399

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
                  G  +M+AA D FR+ A++QLK                 D   +AY+A ++A  
Sbjct: 400 GYLFKSQGFSLMIAACDNFRAGAVEQLKTHGQCLGIPVYDRGYKDDPPEIAYQAIREATI 459

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           KK+DV+++DTAGR+ +N  LM  + +++ +      + P  VL V +A  G + + Q+  
Sbjct: 460 KKIDVVLVDTAGRMQHNEPLMRALSRIVTM------NNPDLVLFVGEALVGNDGVDQLVN 513

Query: 252 FHA----------VAGTTGLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGE 293
           F+           V     +I++K D    + G  + +      P+ F+GVG+
Sbjct: 514 FNKALIVNSPKDNVREIDAIILSKFDTVDEKVGAALSLTSATGKPILFVGVGQ 566


>gi|325187752|emb|CCA22298.1| signal recognition particle receptor subunit alpha [Albugo
           laibachii Nc14]
          Length = 589

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 104/203 (51%), Gaps = 17/203 (8%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S R + I+ VGVNGVGK+T + K+   +   G+KVM+AA DTFRS A++QL   A     
Sbjct: 380 SGRAYSIVFVGVNGVGKSTSLSKICYYLKSKGVKVMIAACDTFRSGAVEQLNQHAKVLDV 439

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    + AA+A EA + A     D ++IDTAGR+ NN  LM  + K++        
Sbjct: 440 PLFERGYAKNPAAVAQEAIQHATTNSFDCVLIDTAGRMQNNEPLMRALAKLV------SS 493

Query: 228 HAPHSVLQVLDATTGQNALRQVEMF-HAVA---------GTTGLIMTKMDG-TARGGGLI 276
           + P  +L V +A  G + + Q+ MF  A+A         G  G+++TK D    + G  +
Sbjct: 494 NNPDLILFVGEALVGNDGINQLSMFDRALADSSDRQDAHGIDGIVITKFDTIDDKVGAAV 553

Query: 277 PIVVTHKIPVYFLGVGEGINDLE 299
            +V     P+ F+G G+    L+
Sbjct: 554 SLVYKTGQPIMFVGTGQKYTHLK 576


>gi|118443987|ref|YP_878286.1| signal recognition particle protein [Clostridium novyi NT]
 gi|118134443|gb|ABK61487.1| signal recognition particle protein [Clostridium novyi NT]
          Length = 451

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 152/286 (53%), Gaps = 15/286 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSV-QRVLYDVSE 90
           +S + +   +RE ++  L+ +D+   + ++ V    E+ L +   K ++  Q+V+  V++
Sbjct: 23  LSEKDIKQAMRE-VKLALLEADVNYKIVRQFVKTTGEKCLGEEVMKSLTPGQQVVKIVND 81

Query: 91  LIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            + +++   S     +FS++   VI++VG+ G GKTT+ GKL+ ++     K +L A D 
Sbjct: 82  ELKELMG--STESKIEFSNKGLTVIMLVGLQGAGKTTMAGKLALQLRKNNKKPLLVACDI 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAI QL++   +                +A  + + A+    +V+IIDTAGRLH + 
Sbjct: 140 YRPAAIKQLQVVGKQIDVPVFSMGDKVSPVDIAKASIEHAKNNNNNVVIIDTAGRLHIDE 199

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  +  +   ++      P+ +L V+D+ TGQ+A+   E F+     TG+I+TK+DG 
Sbjct: 200 ALMEELENIKGSVE------PNEILLVVDSMTGQDAVNVSETFNNKLDITGVILTKLDGD 253

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            RGG  + I      P+ ++G+GE +NDLE F     ++ I G  D
Sbjct: 254 TRGGAALSIKAVTGKPIKYVGLGEKMNDLEVFHPDRMASRILGMGD 299


>gi|119717490|ref|YP_924455.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nocardioides
           sp. JS614]
 gi|119538151|gb|ABL82768.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nocardioides
           sp. JS614]
          Length = 523

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 145/293 (49%), Gaps = 19/293 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L +   ++    RL     D    E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FATLSDRLADTFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVKEFVGAVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+V+  V+E +  +L   ++   +  +  P VI++ G+ G GKTT+  KL
Sbjct: 62  EEVSQALNPAQQVVKIVNEELVAILGGEARRLRYAKTG-PTVIMLAGLQGAGKTTLAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +  + + G   +L A D  R  A++QL++  +R        E G+   D   +A  + ++
Sbjct: 121 ALWLKEQGKSPLLVAADLQRPNAVNQLQVNGERAGVPVFAPEPGNGVGDPVGVARASIEE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+I+DTAGRL  ++ +M      IR     D   P  VL V+DA  GQ+A+  
Sbjct: 181 AKRTLHDVVIVDTAGRLGVDAEMMQQAAD-IR-----DAVQPDEVLFVVDAMIGQDAVVT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + F    G  G+++TK+DG ARGG  + I      PV F   GE + D + F
Sbjct: 235 AQAFLDGVGYDGVVLTKLDGDARGGAALSIASITGKPVMFASAGEKLTDFDLF 287


>gi|254829203|ref|ZP_05233890.1| signal recognition particle protein [Listeria monocytogenes FSL
           N3-165]
 gi|290893069|ref|ZP_06556058.1| signal recognition particle protein [Listeria monocytogenes FSL
           J2-071]
 gi|258601615|gb|EEW14940.1| signal recognition particle protein [Listeria monocytogenes FSL
           N3-165]
 gi|290557429|gb|EFD90954.1| signal recognition particle protein [Listeria monocytogenes FSL
           J2-071]
          Length = 450

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+ + +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  LE F     ++ I G  D
Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300


>gi|300783873|ref|YP_003764164.1| signal recognition particle, subunit SRP54 [Amycolatopsis
           mediterranei U32]
 gi|299793387|gb|ADJ43762.1| signal recognition particle, subunit SRP54 [Amycolatopsis
           mediterranei U32]
          Length = 512

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  + ++  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALGVVKTFIAKIKERAKGAEVSQALNPAQQVIKIVNEELVGILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++  N   +  P VI++ G+ G GKTT+ GKL+  +   G   ML A D  R  A+ Q
Sbjct: 88  GETRRLNLAKTP-PTVIMLAGLQGAGKTTLAGKLALWLKKQGHTPMLVACDLQRPNAVTQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++  +R        E G+   D   +A  A  +A+  + DV+++DTAGRL  +  LM  
Sbjct: 147 LQVVGERAGVVTFAPEPGNGVGDPVDVARRAIAEAKHAQHDVVVVDTAGRLGVDEELMKQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D   P  VL V+DA  GQ+A+   + F    G +G+++TK+DG ARGG 
Sbjct: 207 AAD-IR-----DAVEPDEVLFVVDAMIGQDAVTTAQAFQDGVGFSGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F   GE + D + F     ++ I G  D
Sbjct: 261 ALSVREVTGQPILFASNGEKLEDFDTFHPDRMASRILGMGD 301


>gi|116582905|gb|ABK00075.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 140

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 79/118 (66%), Gaps = 1/118 (0%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + E ++ ++ PL KP     +  P VI++ G+NG GKTT IGKL+K     G  V+LAAG
Sbjct: 22  LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           DTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A+A+ +D+++ DTAGRL
Sbjct: 82  DTFRAAAREQLQAWGERNNVT-VISQTAGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138


>gi|206895825|ref|YP_002247046.1| signal recognition particle protein [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738442|gb|ACI17520.1| signal recognition particle protein [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 434

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 126/279 (45%), Gaps = 23/279 (8%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           D   ++L  LLI +D+ + V  ++VE L  K   +   V    Y +  +  ++   L   
Sbjct: 28  DQFLKDLRWLLIEADVSLPVVNELVERLREKLKPQTGIVSPQDYLLKTVYEELTALLG-- 85

Query: 103 FNWDFSHRP--------HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
                S+RP         + ++ G+ G GKTT   KL   +   G  V+L A D +R A 
Sbjct: 86  -----SYRPLKVNPRGISLYVLAGLQGSGKTTTAAKLGYFLKRNGKSVVLGAADPYRPAG 140

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +QL++ A      F              ++F +      DVLI+DTAGRLH  + ++  
Sbjct: 141 AEQLRVLASENGLYFESFVENGKVDIAKIQSFMKKSLH--DVLILDTAGRLHVETDMLQE 198

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           +  + + L       P  VL V+DA  GQ A    + F   A  +G+I+ K DG   GG 
Sbjct: 199 LSMINKQLN------PQEVLLVVDAMLGQEAANIAKSFKEAAPVSGVILAKADGDELGGA 252

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            + +     +P+ F+G GE I D EPF   + +A+I G 
Sbjct: 253 ALSVAYVSGVPILFMGTGEHIRDFEPFDPNETAAMILGI 291


>gi|313632786|gb|EFR99746.1| signal recognition particle protein [Listeria seeligeri FSL N1-067]
          Length = 427

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 78  PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 135

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+   +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 136 PVFSLGDQVSPVEIAKQAIEKAKEDHLDYVIIDTAGRLHIDETLMDELKQVKEIAN---- 191

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   E F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 192 --PTEILLVVDSMTGQDAVNVAESFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 249

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  +E F     ++ I G  D
Sbjct: 250 FVATGEKMEAIETFHPDRMASRILGMGD 277


>gi|19113452|ref|NP_596660.1| signal recognition particle receptor alpha subunit Srp101
           [Schizosaccharomyces pombe 972h-]
 gi|74644172|sp|O43032|SRPR_SCHPO RecName: Full=Signal recognition particle receptor subunit alpha
           homolog; Short=SR-alpha; AltName: Full=Docking protein
           alpha; Short=DP-alpha
 gi|2950469|emb|CAA17783.1| signal recognition particle receptor alpha subunit Srp101
           [Schizosaccharomyces pombe]
          Length = 547

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 110/200 (55%), Gaps = 16/200 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR---- 164
           +RP+ I ++GVNGVGK+T + K++  +     ++++AA DTFRS AI+QL +        
Sbjct: 340 NRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTFRSGAIEQLGVHVKNLQSL 399

Query: 165 --TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
             +S +      G D++ +   A + A+    DV++IDTAGR HN+  LM  + K  +  
Sbjct: 400 KGSSIELFAQGYGKDSSFVVKNAVEYAKQNSFDVILIDTAGRRHNDQRLMGSLEKFTKAT 459

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV---AGTTGLIMTKMDGTAR-GGGLIPI 278
           K LD      + QV +A  G ++L Q + F A        G I++K+D   +  G ++ +
Sbjct: 460 K-LDK-----IFQVAEALVGTDSLAQAKHFQASLYHRPLDGFIISKVDTVGQLVGVMVGM 513

Query: 279 VVTHKIPVYFLGVGEGINDL 298
           V   ++P+ F+G+G+  +DL
Sbjct: 514 VYAVRVPIIFVGIGQTYSDL 533


>gi|46908032|ref|YP_014421.1| signal recognition particle protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093840|ref|ZP_00231584.1| signal recognition particle protein [Listeria monocytogenes str. 4b
           H7858]
 gi|226224404|ref|YP_002758511.1| signal recognition particle protein Ffh [Listeria monocytogenes
           Clip81459]
 gi|254826157|ref|ZP_05231158.1| signal recognition particle protein [Listeria monocytogenes FSL
           J1-194]
 gi|254933273|ref|ZP_05266632.1| signal recognition particle protein [Listeria monocytogenes
           HPB2262]
 gi|254994058|ref|ZP_05276248.1| hypothetical protein LmonocytoFSL_14589 [Listeria monocytogenes FSL
           J2-064]
 gi|255521154|ref|ZP_05388391.1| hypothetical protein LmonocFSL_08006 [Listeria monocytogenes FSL
           J1-175]
 gi|300763886|ref|ZP_07073883.1| signal recognition particle protein [Listeria monocytogenes FSL
           N1-017]
 gi|46881302|gb|AAT04598.1| signal recognition particle protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47017781|gb|EAL08570.1| signal recognition particle protein [Listeria monocytogenes str. 4b
           H7858]
 gi|225876866|emb|CAS05575.1| Putative signal recognition particle protein Ffh [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|293584833|gb|EFF96865.1| signal recognition particle protein [Listeria monocytogenes
           HPB2262]
 gi|293595397|gb|EFG03158.1| signal recognition particle protein [Listeria monocytogenes FSL
           J1-194]
 gi|300515622|gb|EFK42672.1| signal recognition particle protein [Listeria monocytogenes FSL
           N1-017]
 gi|328466157|gb|EGF37314.1| signal recognition particle protein [Listeria monocytogenes 1816]
 gi|332312242|gb|EGJ25337.1| Signal recognition particle [Listeria monocytogenes str. Scott A]
          Length = 450

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+ + +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  LE F     ++ I G  D
Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300


>gi|189183745|ref|YP_001937530.1| signal recognition particle protein [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180516|dbj|BAG40296.1| signal recognition particle protein [Orientia tsutsugamushi str.
           Ikeda]
          Length = 450

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 15/268 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V +  +  ++ K   ++V  SV   Q V+  +S+ + K+L           
Sbjct: 38  LLEADVSLVVIKDFINNVVEKAKGQEVLRSVTPGQMVIKIISDEMIKVLSSSETEQALRI 97

Query: 108 SHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              P V I+++G+ G GKTT   KL+ K++    KVM+ + D +R AA +QL+    R  
Sbjct: 98  EFEPPVNIMMIGLQGSGKTTTTAKLAMKLAKKNKKVMVVSLDIYRPAAREQLETLV-RNH 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +   I S+       A    +AK +  DV+I DTAGRLH +  ++  +  +  ++  
Sbjct: 157 ETILSLPIVSNENVFQIIARSTKEAKLLGCDVVIYDTAGRLHIDEPMLQELSNIKEII-- 214

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  +L V+D+  GQ ++     F+     +G+++TK+DG +RGG  + I      
Sbjct: 215 ----TPKEILLVVDSLIGQESVNVANQFNQTLNISGVVLTKIDGDSRGGAALSIKYVTGK 270

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITG 312
           P+ FLG GE  NDLE F  +  ++ I G
Sbjct: 271 PIKFLGTGEKTNDLEEFHPERIASRILG 298


>gi|154302571|ref|XP_001551695.1| hypothetical protein BC1G_09862 [Botryotinia fuckeliana B05.10]
 gi|150855351|gb|EDN30543.1| hypothetical protein BC1G_09862 [Botryotinia fuckeliana B05.10]
          Length = 660

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 137/283 (48%), Gaps = 40/283 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQ-RVLYDVSELIHKMLMP----- 98
           +ED L+R ++    A ++ E    EL+  +     SVQ R+   +   + K+L P     
Sbjct: 369 MEDHLLRKNVAREAAMRLCEGVERELIGVKTGNFESVQTRIATAMEASLRKILTPTSSLD 428

Query: 99  --------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
                   +S P       RP+V+ +VGVNGVGK+T + K+   +     KV++ A DTF
Sbjct: 429 LLREIDSIVSPPALSLKKKRPYVMSIVGVNGVGKSTNLSKICYFLLQNKYKVLVVACDTF 488

Query: 151 RSAAIDQLKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIID 200
           RS A++QL +   R   +    E           G DAA +A ++   A  +  DV++ID
Sbjct: 489 RSGAVEQLAVHV-RNLKELTTREGGQVELYQKGYGKDAANVAKDSVSFAAQEGYDVVLID 547

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-- 258
           TAGR HN+  LM+ + K  +  +      P  +L V +A  G +++ Q   F+A  G   
Sbjct: 548 TAGRRHNDQRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGQGR 601

Query: 259 --TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
              G I++K D      G L+ +V    +PV F+GVG+  +DL
Sbjct: 602 SLDGFIISKCDTVGDMVGTLVSMVHATNVPVLFVGVGQHYSDL 644


>gi|255026961|ref|ZP_05298947.1| hypothetical protein LmonocytFSL_12638 [Listeria monocytogenes FSL
           J2-003]
          Length = 450

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+ + +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  LE F     ++ I G  D
Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300


>gi|289670362|ref|ZP_06491437.1| signal recognition particle protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 373

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 105/195 (53%), Gaps = 13/195 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +   K VM+ + D +R AAI+QLK  A++    F
Sbjct: 15  PAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLF 74

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           + S+       +   A   A+   VDVL++DTAGRL  ++ +M  I  +         HA
Sbjct: 75  LASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDAAMMDEIKAL---------HA 125

Query: 230 ---PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA TGQ+A    + F      TG+++TK DG ARGG  + +      P+
Sbjct: 126 AVNPTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKTDGDARGGAALSVRYITGKPI 185

Query: 287 YFLGVGEGINDLEPF 301
            F+G GE  + L+ F
Sbjct: 186 KFVGTGEKTDGLDVF 200


>gi|313681624|ref|YP_004059362.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154484|gb|ADR33162.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 448

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 137/282 (48%), Gaps = 13/282 (4%)

Query: 28  LKEGITDIISSRRLDDGVRE------ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L E  T  I   R  D  +       EL+  L+++D+   V +++++ +  +     V  
Sbjct: 5   LTESFTSAIRKIRFHDDEKALTKALGELKKALLKADVNHKVVKELIDSVEIQTKQNGVGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
            + L  + + ++ +L    K         P VIL+ G+ G GKTT  GKL+  +     K
Sbjct: 65  DQFLDALRKSLYALLDVKGKSGFVYAPVAPTVILMTGLQGSGKTTTTGKLANWLKTRQKK 124

Query: 142 -VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            V++ A D  R AA++QL+        +    +   +   +   A + A+   VDV++ID
Sbjct: 125 RVLVVAADLQRLAAVEQLRQVCGAIDVELYADDATKNPVEVVKAALEHAKKVLVDVVLID 184

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  LM  + ++  V        PH +  V D+ +GQ+A+R    F+   G  G
Sbjct: 185 TAGRLAIDDELMGELAEVKAVAN------PHEIFYVADSLSGQDAVRTAATFNEKIGIDG 238

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           +I+TK DG ++GG  + I    ++P+ F+G GE + DLE F+
Sbjct: 239 VILTKYDGDSKGGVALGIASQIQVPLRFIGAGEKMEDLEIFL 280


>gi|68467725|ref|XP_722021.1| hypothetical protein CaO19.11434 [Candida albicans SC5314]
 gi|46443968|gb|EAL03246.1| hypothetical protein CaO19.11434 [Candida albicans SC5314]
          Length = 535

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 144/289 (49%), Gaps = 33/289 (11%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMP-LS 100
           D V ++  + LI  +I   +A  I++++ TK  + K V++      +++ + K+L P +S
Sbjct: 245 DEVSKKFREQLITKNITPGIATTIIDKIKTKLSSNKKVTMAVYKQALTDELTKILTPNVS 304

Query: 101 KPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
                    N + + RP+VI VVGVNGVGK+T + KL+       L V++ A DTFRS A
Sbjct: 305 TDLLHDIKRNAELNTRPYVISVVGVNGVGKSTNLAKLAFWFLQHNLNVLICACDTFRSGA 364

Query: 155 IDQLKIWA------------DRTSADFVCSEIGS--DAAALAYEAFKQAQAKKVDVLIID 200
           ++QLK+               ++  D      GS       A +A + A+  K D+++ID
Sbjct: 365 VEQLKVHVTNLNRLNEASTNTKSRIDIFEKGYGSGDHVVQTAKQAVQYAEENKFDIVLID 424

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGR H+N+ LMA + K        D   P+ ++ V +A  G +++ Q   F+   G   
Sbjct: 425 TAGRTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQATNFNKAFGNKR 478

Query: 261 ----LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                I++K+D      G +I +V+   +P+ F+G G+   D++    K
Sbjct: 479 TLDFFIISKVDTVGDLVGTMINMVMATNVPILFVGTGQTYTDIKRLSVK 527


>gi|309811467|ref|ZP_07705249.1| signal recognition particle protein [Dermacoccus sp. Ellin185]
 gi|308434518|gb|EFP58368.1| signal recognition particle protein [Dermacoccus sp. Ellin185]
          Length = 538

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 146/309 (47%), Gaps = 37/309 (11%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT  FA+   K +   +DI ++ R       ++   L+ +D+ + V ++    +  +  
Sbjct: 8   RLTATFANLKGKGRLTESDINATIR-------DIRMALLDADVALPVVKQFTRGVRERAL 60

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +VS      Q+V+  V+E +  +L   ++   +  +  P VI++ G+ G GKTT  GK
Sbjct: 61  GAEVSQALNPGQQVVKIVNEELVAILGGQTRSIQYAKTG-PTVIMLAGLQGSGKTTFAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------------- 176
           L++++ D G   +L A D  R  A+ QL++  +R        E G+              
Sbjct: 120 LARRLRDEGHFPVLVAADLQRPNAVRQLEVVGERAGVPVFAPERGNEGGHDAVSETGEGT 179

Query: 177 ----DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               D   +A     QA+ ++ DV+I+DTAGRL  +  LM     +   ++      P+ 
Sbjct: 180 RSHGDPVWVAQAGVAQAKVRQYDVVIVDTAGRLAVDENLMQQAADIREAIQ------PNE 233

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL V+DA  GQ A+     F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 234 VLFVIDAMIGQAAIETAIAFQDGVDFTGVVLSKLDGDARGGAALSVASVTGRPIMFASTG 293

Query: 293 EGINDLEPF 301
           EG+ D+E F
Sbjct: 294 EGVKDIEVF 302


>gi|290977140|ref|XP_002671296.1| predicted protein [Naegleria gruberi]
 gi|284084864|gb|EFC38552.1| predicted protein [Naegleria gruberi]
          Length = 454

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 6/204 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            +   +G+ G GKTT   K ++     G +  L   DTFR+ A++QL+  A +    F  
Sbjct: 82  ELFFEIGLQGAGKTTTCTKYARYYQKKGFRSALVCADTFRAGALEQLRQNAAKVQIAFYG 141

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            E  ++   +A +  +Q + +K +V+I+DT+GR      L   + ++ + +       P 
Sbjct: 142 DEYETNPVKIAKDGVEQFKNEKYEVIIVDTSGRHMQEESLFEEMEQVSQAVN------PD 195

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V+ V+D++ GQ+   Q   F +      +I+TK+DG A+GGG +  V   K P+ F+G 
Sbjct: 196 EVIFVMDSSIGQSVKEQAAAFKSRVSVGSVIVTKLDGHAKGGGALSAVAATKSPITFIGT 255

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE  ++ + F A+ F + + G  D
Sbjct: 256 GEDFDNFQQFNAESFVSRLLGQGD 279


>gi|255082426|ref|XP_002504199.1| type II secretory pathway family [Micromonas sp. RCC299]
 gi|226519467|gb|ACO65457.1| type II secretory pathway family [Micromonas sp. RCC299]
          Length = 650

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 18/201 (8%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+ I+ VGVNGVGK+T + K++  +    +KVM+AA DTFR+ A++QL+    R     
Sbjct: 440 RPYTIVFVGVNGVGKSTNLSKVAYWLLQHDVKVMIAACDTFRAGAVEQLRTHCKRLGVPL 499

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D A +A EA K AQ +  D +++DTAGR+ +N  LM  + K+I +      + 
Sbjct: 500 FERGYEKDPANVASEAIKAAQRQGCDAVLVDTAGRMQDNEPLMRALSKLINM------ND 553

Query: 230 PHSVLQVLDATTGQNALRQVEMF-------HAVAGTT----GLIMTKMDG-TARGGGLIP 277
           P   L V +A  G +A+ Q+  F       +A A  T    G++++K D    + G  + 
Sbjct: 554 PDLTLFVGEALVGNDAVDQLSKFNERLADLNANARRTKLIDGIVLSKFDTIDDKVGAALS 613

Query: 278 IVVTHKIPVYFLGVGEGINDL 298
           +V T   PV F+G G+   DL
Sbjct: 614 MVYTSGAPVVFVGCGQTYTDL 634


>gi|160943022|ref|ZP_02090260.1| hypothetical protein FAEPRAM212_00499 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445716|gb|EDP22719.1| hypothetical protein FAEPRAM212_00499 [Faecalibacterium prausnitzii
           M21/2]
          Length = 451

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 138/275 (50%), Gaps = 16/275 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+   VA+    ++  +   ++V       Q+V+  V+E +   LM  S+ 
Sbjct: 34  EVRMALLEADVNYKVAKDFCAKVSERAMGQEVMESLTPAQQVVKIVNEELVA-LMGGSEA 92

Query: 103 FNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
              +  ++   VI++ G+ G GKTT   KL+K     G + ML A D +R AAIDQL++ 
Sbjct: 93  ARLNIKNKGQTVIMLCGLQGNGKTTHAAKLAKFYIKQGRRPMLVACDIYRPAAIDQLQVV 152

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +  A  V +  G+    +A +A   A+    D++I+DTAGRL  + +LM       + 
Sbjct: 153 GKQAGAP-VFTLPGAKPPEIARKALAHAKDYGNDIVILDTAGRLQIDEVLM-------QE 204

Query: 222 LKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           L  +    P    L V+DA  GQ+A+   + F+   G  G+I+TK DG  RGG  + ++ 
Sbjct: 205 LVDIKAAVPVDETLLVVDAMAGQDAVNVAKTFNETVGVDGIILTKTDGDTRGGAALSVLA 264

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+ F G GE ++DL+ F     ++ I G  D
Sbjct: 265 VTGKPIKFQGTGEKLDDLDVFHPDRMASRILGMGD 299


>gi|289435144|ref|YP_003465016.1| signal recognition particle protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171388|emb|CBH27932.1| signal recognition particle protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 450

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+   +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEDHLDYVIIDTAGRLHIDETLMDELKQVKEIAN---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   E F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PTEILLVVDSMTGQDAVNVAESFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  +E F     ++ I G  D
Sbjct: 273 FVATGEKMEAIETFHPDRMASRILGMGD 300


>gi|163869270|ref|YP_001610526.1| signal recognition particle protein [Bartonella tribocorum CIP
           105476]
 gi|161018973|emb|CAK02531.1| signal recognition particle protein [Bartonella tribocorum CIP
           105476]
          Length = 520

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 110/209 (52%), Gaps = 13/209 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT---S 166
           P VI+++G+ G GKTT   KL+K+ +D    KV++A+ DT R AA +QL+   ++    S
Sbjct: 100 PVVIMMIGLQGSGKTTTTAKLAKRFTDKHNKKVLMASLDTRRPAAQEQLRQLGEQAKLAS 159

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +  ++  D A+ A +A   A+    DVL++DTAGR H +  LM  + ++        
Sbjct: 160 LPIIAGQLPVDIASRAVQA---AKLGGYDVLLLDTAGRNHIDEALMLELAEIKAC----- 211

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              PH ++ V D+ TGQ+A+     F    G TG+I+T+MD   RGG  + +      P+
Sbjct: 212 -SLPHEIMLVADSLTGQDAVHLARSFDERVGITGIILTRMDSDGRGGAALSMRAVTGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             +G GE I DLE F     +  I G  D
Sbjct: 271 KAIGTGEKIEDLEEFHPSRIADRILGMGD 299


>gi|313637361|gb|EFS02841.1| signal recognition particle protein [Listeria seeligeri FSL S4-171]
          Length = 450

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A ++A+   +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIEKAKEDHLDYVIIDTAGRLHIDETLMDELKQVKEIAN---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   E F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 215 --PTEILLVVDSMTGQDAVNVAESFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  +E F     ++ I G  D
Sbjct: 273 FVATGEKMEAIETFHPDRMASRILGMGD 300


>gi|163790804|ref|ZP_02185229.1| signal recognition particle protein [Carnobacterium sp. AT7]
 gi|159873872|gb|EDP67951.1| signal recognition particle protein [Carnobacterium sp. AT7]
          Length = 437

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  +  +   + +L A D +R AAI QL+    +     
Sbjct: 101 PTVVMMVGLQGAGKTTTAGKLASYLRKNQNKRPLLVAADIYRPAAIQQLETIGKQLDVPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +A +  ++A+A+ +D ++IDTAGRL  +  LM  +  +    +      
Sbjct: 161 FSMGDQVSPVEIARQGIEKAKAEHLDFVLIDTAGRLQIDETLMQELSDIKETTQ------ 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +  V+DA TGQ A      F      TG+I+TK+DG  RGG  + I      P+ F 
Sbjct: 215 PTEIFLVVDAMTGQEAANVAASFDEQLDITGVILTKLDGDTRGGAALSIRAVTGKPIKFT 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE ++ LEPF     +  I G  D
Sbjct: 275 GSGEKLDALEPFYPDRMANRILGMGD 300


>gi|257387282|ref|YP_003177055.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halomicrobium mukohataei DSM 12286]
 gi|257169589|gb|ACV47348.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halomicrobium mukohataei DSM 12286]
          Length = 468

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 11/281 (3%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHK 94
           IS   ++D V+E ++  L+++D+ V + Q + + + ++   ++        D V  ++++
Sbjct: 23  ISEEDIEDIVKE-IQRSLLQADVDVGLVQDLSDGIKSRALDEEPPAGTTPRDWVLRIVYE 81

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            L+ L    + +       I++ G+ G GKTT   K++   S  GL+  +   DT R  A
Sbjct: 82  ELVDLVGE-STEIPLENQTIMLAGLYGSGKTTTAAKMAWWFSKKGLRPAVIQTDTDRPGA 140

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            DQ K  AD    +F   E  +D   +A E    A  +  DV I+DTAGR   N  L+  
Sbjct: 141 YDQSKQMADNAEVEFYGDEDSNDPVEIAREGL--AATEDADVRIVDTAGRDGLNEELIDQ 198

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           I ++   ++      P   L V+DA  GQ+A  Q + F    G  G+ +TK+DGTA+GGG
Sbjct: 199 IERIGAEVQ------PDRNLLVIDAAMGQSAKDQAQEFEDAIGIDGVAITKLDGTAKGGG 252

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +  V      + FLG GE + D+E F    F + + G  D
Sbjct: 253 ALAAVDQTDSTIAFLGTGETVKDIERFEPSGFISRLLGMGD 293


>gi|310779168|ref|YP_003967501.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ilyobacter
           polytropus DSM 2926]
 gi|309748491|gb|ADO83153.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ilyobacter
           polytropus DSM 2926]
          Length = 447

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 6/208 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +  P VI++ G+ G GKTT   KL+K +   G +  L   D +R AA+ QL++  ++   
Sbjct: 97  AKNPTVIMLAGLQGAGKTTFAAKLAKFLKKKGERPYLVGADVYRPAAMKQLQVLGEQIDV 156

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                E   DA  +  +    A+      +I+DTAGRLH +  LM  + K I+   R   
Sbjct: 157 PVHIQEGSKDARGICSDGLNVAKENNATYVILDTAGRLHVDESLMEEL-KDIKKATR--- 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+DA  GQ+A+   E F+      G+++TK+DG  RGG  + I      P+ 
Sbjct: 213 --PQEILLVVDAMIGQDAVNLAESFNNSLNIDGVVLTKLDGDTRGGAALSIKAVVGKPIK 270

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G+GE I+D+E F  +   + I G  D
Sbjct: 271 FIGIGEKIDDIELFHPERLVSRILGMGD 298


>gi|254821193|ref|ZP_05226194.1| signal recognition particle protein [Mycobacterium intracellulare
           ATCC 13950]
          Length = 518

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 147/311 (47%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALAGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKDRAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P V+++ G+ G GKT++ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELIGILGGQTRQLAFAKTP-PTVVMLAGLQGSGKTSLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184
           +  +   G   +L A D  R AA++QL++  +R          G        D  A+A  
Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGESPGSGPGDPVAVAAA 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A AK  DV+I+DTAGRL  +  LMA     IR     D   P  VL VLDA  GQ+
Sbjct: 181 GIAEANAKHFDVVIVDTAGRLGIDDELMA-QAAAIR-----DAIDPDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   E F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             S+ I G  D
Sbjct: 295 RMSSRILGMGD 305


>gi|146418701|ref|XP_001485316.1| hypothetical protein PGUG_03045 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 529

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 140/286 (48%), Gaps = 30/286 (10%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-LSK 101
           D V +   D  I  +I  A A+ I ++L  +   K V+++     ++  + K+L P +S 
Sbjct: 242 DEVSKTFTDQFISKNIAPATAKTITDKLNHELKGKKVTLKDYKRALTVELTKILTPNVST 301

Query: 102 PFNWDF-------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
              +D        + RP+VI VVGVNGVGK+T + KL+       L V++ A DTFRS A
Sbjct: 302 DLLYDVKRNSSTSNSRPYVISVVGVNGVGKSTNLAKLAYWFLQNNLNVLICACDTFRSGA 361

Query: 155 IDQLKIWAD---------RTSADFVCSEI--GSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           ++QLK+  +          T  D        G    A A  A + A A+  D+++IDTAG
Sbjct: 362 VEQLKVHVNNLKRLNTTTNTKIDIFEKGYGGGDHVVATAKLAIEFAGAEGFDIVLIDTAG 421

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG--- 260
           R H+N+ LMA + K        D   P+ ++ V +A  G +++ Q   F+   G      
Sbjct: 422 RTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQAVNFNNAFGNRRSLD 475

Query: 261 -LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
             I++K+D      G +I +V+  K+P+ F+G G+   D++    K
Sbjct: 476 FFIISKVDTVGDLVGSMINMVMATKVPILFVGTGQVYTDIKRLSVK 521


>gi|145224761|ref|YP_001135439.1| signal recognition particle protein [Mycobacterium gilvum PYR-GCK]
 gi|315445091|ref|YP_004077970.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. Spyr1]
 gi|145217247|gb|ABP46651.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium gilvum PYR-GCK]
 gi|315263394|gb|ADU00136.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. Spyr1]
          Length = 535

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 148/326 (45%), Gaps = 38/326 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ +    RL D        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTGALSGLRGKGRLTDADIDATAREIRLALLEADVSLPVVRAFISRIKDRAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSAALNPAQQVVKIVNEELVAILGGETRQLAF-ARNPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------------- 175
           +K +   G   +L A D  R  A++QL+I  +R          G                
Sbjct: 121 AKWLKAQGHTPLLVACDLQRPGAVNQLQIVGERAGVHVFAPHPGVSPAGETIEQMTAHAR 180

Query: 176 ------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D  ++A     +A++K  DV+I+DTAGRL  +  LMA     IR     D   
Sbjct: 181 SETAGAGDPVSVAAAGLAEARSKLYDVVIVDTAGRLGIDQELMA-QAAAIR-----DAVN 234

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +L VLDA  GQ+A+   + F    G TG+++TK+DG ARGG  + +      P+ F 
Sbjct: 235 PDEILFVLDAMIGQDAVTTADAFREGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFA 294

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
             GE + D + F     ++ I G  D
Sbjct: 295 SAGEKLEDFDVFHPDRMASRILGMGD 320


>gi|326422495|gb|EGD71892.1| putative signal recognition particle protein SRP54 [Candidatus
           Parvarchaeum acidophilus ARMAN-5_'5-way FS']
          Length = 437

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/198 (37%), Positives = 102/198 (51%), Gaps = 14/198 (7%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P  IL+VG+ G GKTT   KL+      G +V+L   DTFR AA  QL+  + + +   +
Sbjct: 97  PFKILLVGLFGSGKTTTAAKLANYYRKRGYRVLLLGLDTFRPAAYQQLEQLSKQINVKIM 156

Query: 171 CSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               GSD      +A K A    K  D++I D+AGR     IL   + K I+ ++  D  
Sbjct: 157 GG--GSDP----IKAIKSAMGSFKNFDIIIADSAGR----DILDKELIKEIKGIR--DTL 204

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P++V  V+ A  GQNA  QV+ FH +     +I+TK DGTA GGG +         V F
Sbjct: 205 KPNNVTLVIPADLGQNASVQVKGFHELLDINNIILTKTDGTANGGGALTAAYISGAKVTF 264

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE IND E F  K F
Sbjct: 265 IGTGEKINDFEEFNPKKF 282


>gi|209882278|ref|XP_002142576.1| signal recognition particle receptor subunit alpha [Cryptosporidium
           muris RN66]
 gi|209558182|gb|EEA08227.1| signal recognition particle receptor subunit alpha, putative
           [Cryptosporidium muris RN66]
          Length = 519

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 107/190 (56%), Gaps = 14/190 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           + I+ +GVNGVGK+T + K+   + + G LKVM+ A DTFR+ AI+QLK  A+       
Sbjct: 317 YSIVFLGVNGVGKSTNLAKVCYYLKNKGNLKVMIVACDTFRAGAIEQLKTHANCLDVYLY 376

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G DAA +A +A   A+  K D+++IDTAGR+ +N  LM  + K++ +      + P
Sbjct: 377 ERGYGKDAAFIAKDAILYAKENKYDIVLIDTAGRMQDNVPLMKSLAKLVMI------NNP 430

Query: 231 HSVLQVLDATTGQNALRQVEMF------HAVAGTTGLIMTKMDGT-ARGGGLIPIVVTHK 283
           + V+ V +A  G +A+ Q++ F      HA     G+++TK D    + G  + +V +  
Sbjct: 431 NLVIFVGEALVGNDAVNQLQTFNKFLIDHANRPIDGILLTKFDTVDDKIGAALSMVYSTG 490

Query: 284 IPVYFLGVGE 293
            P+ F+G G+
Sbjct: 491 QPIIFIGTGQ 500


>gi|115522355|ref|YP_779266.1| signal recognition particle protein [Rhodopseudomonas palustris
           BisA53]
 gi|115516302|gb|ABJ04286.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Rhodopseudomonas palustris BisA53]
          Length = 510

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  I++VG+ G GKTT   KL+++++     KV++A+ D +R AA++QL +       D 
Sbjct: 100 PVPIMMVGLQGSGKTTTTAKLARRLTQRDKRKVLMASLDVYRPAAMEQLAVLGRDLEIDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +   IG   + +A  A + A+    DVL++DTAGR   +  +MA   ++  V        
Sbjct: 160 LPIVIGQKPSQIASRALEAAKLGGYDVLLLDTAGRTTLDDEMMAEAAEIKAVAN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V D+ TGQ+A+     F    G TG+++T++DG  RGG  + +      P+  +
Sbjct: 214 PHEVLLVADSLTGQDAVNLARAFDTKVGLTGIVLTRIDGDGRGGAALSMRAVTGKPIKLM 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE  + LE F     ++ I G  D
Sbjct: 274 GTGEKTDALEDFHPSRIASRILGMGD 299


>gi|158287925|ref|XP_309798.4| AGAP010894-PA [Anopheles gambiae str. PEST]
 gi|157019422|gb|EAA05506.5| AGAP010894-PA [Anopheles gambiae str. PEST]
          Length = 655

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 140/293 (47%), Gaps = 41/293 (13%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP--- 98
           ++L D LI  ++   +AQK+ + +  K   +     D     V   ++E + ++L P   
Sbjct: 361 DKLRDHLIGKNVASDIAQKLCDSVAGKLEGRVIGTFDTIATTVRNTLTEALVQILSPKRR 420

Query: 99  ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              L        + RP V+   GVNGVGK+T + K+   + +  L V++AA DTFR+ A+
Sbjct: 421 VDILRDCLEAKRAGRPFVMSFCGVNGVGKSTNLAKICFWLIENNLSVLIAACDTFRAGAV 480

Query: 156 DQLKIW-------------ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QL+                 R+         G DAA +A EA + A   K+DV++IDTA
Sbjct: 481 EQLRTHMRHLNALHPAERHGGRSMVQLYEKGYGKDAAGIAMEAIRYANDSKIDVVLIDTA 540

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259
           GR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ A+A  +  
Sbjct: 541 GRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYSSS 594

Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                  G+++TK D    + G  I +      P+ F+G G+   DL+   AK
Sbjct: 595 ERPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNAK 647


>gi|254455437|ref|ZP_05068866.1| signal recognition particle protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082439|gb|EDZ59865.1| signal recognition particle protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 452

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 158/329 (48%), Gaps = 33/329 (10%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT  F      LK+  +  ++  ++D+G+R  +   L+ +D+ + VA++ +E +  
Sbjct: 1   MFENLTNKFEEIFSSLKKAPS--LNEAQVDEGLRS-IRQALLEADVTLEVAKEFIENVKP 57

Query: 73  KRYAKDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K   +++         V +++YD  EL++ +L   +   N + +  P  +++VG+ G GK
Sbjct: 58  KVLGQEIIRSTSPGDMVVKIVYD--ELVN-LLGETNNEINLN-AVPPVPMMLVGLQGSGK 113

Query: 125 TTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT   KL+K + ++   KVM+ + D +R AA +QL+   ++ +   +    G     +  
Sbjct: 114 TTTTAKLAKYLETNKKKKVMMVSLDIYRPAAQEQLRSLGEQNNILTLPIIEGQQPTDICQ 173

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A   A     ++++ DTAGR   +  +M+ I ++  V+K      P     V D+ TGQ
Sbjct: 174 RAISAANLNGAEIILFDTAGRTQIDLQMMSEIKQIESVIK------PTETFLVADSLTGQ 227

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            A    + F      +G+I+T+ DG ARGG  + +     +P+ FLG+GE I++LE F  
Sbjct: 228 VAAAVAKEFKNTVSLSGIILTRADGDARGGAAVSMKYVSNVPIKFLGIGEKIDNLEVFHP 287

Query: 304 KDFSAVITG-----------CLDYGEEKI 321
              +  I G             D GEE I
Sbjct: 288 DRIANRILGMGDIVSLVEKAAQDLGEENI 316


>gi|228469419|ref|ZP_04054433.1| signal recognition particle protein [Porphyromonas uenonis 60-3]
 gi|228309103|gb|EEK17733.1| signal recognition particle protein [Porphyromonas uenonis 60-3]
          Length = 446

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 133/283 (46%), Gaps = 23/283 (8%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKM 95
           V E L+D+   L+ +D+   VA+   +++  K        Q VL  V+      +++H  
Sbjct: 27  VAETLKDVRRALLDADVNYNVARDFTDQVKEKALG-----QNVLTAVNPGQMMVKIVHDE 81

Query: 96  LMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRS 152
           L  L  S+  + +    P +IL+ G+ G GKTT  GKL+  +      K +L A D +R 
Sbjct: 82  LATLMGSEAVSVNLKGSPAIILMSGLQGSGKTTFSGKLANMLQKQEQRKPLLVACDVYRP 141

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI QL +  ++            D   +A  A   AQ + +D +IIDTAGRL  +  +M
Sbjct: 142 AAIQQLHVLGEQIGVPVYSEPESKDPVQIARNAIAHAQQEGLDTVIIDTAGRLAVDEEMM 201

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             I  +   ++      P   L V+D+ TGQ+A+     F       G+I+TK+DG +RG
Sbjct: 202 NEISSIKEAIR------PDETLFVVDSMTGQDAVNTAAEFDKRLDFDGVILTKLDGDSRG 255

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + I      P+ F+G GE +  L+ F     +  I G  D
Sbjct: 256 GAALSIRSVVNKPIKFVGTGEKMEALQVFHPSRMADRILGMGD 298


>gi|193735096|gb|ACF20057.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 140

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 79/118 (66%), Gaps = 1/118 (0%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + E ++ ++ PL KP     +  P VI++ G+NG GKTT IGKL+K     G  V+LAAG
Sbjct: 22  LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           DTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A+A+ +D+++ DTAGRL
Sbjct: 82  DTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138


>gi|88803314|ref|ZP_01118840.1| signal recognition particle protein [Polaribacter irgensii 23-P]
 gi|88780880|gb|EAR12059.1| signal recognition particle protein [Polaribacter irgensii 23-P]
          Length = 442

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 136/262 (51%), Gaps = 16/262 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML------MPLS 100
           +E+   L+ +D+   +A++  +++ T+   +DV       +  +L+ K++      +   
Sbjct: 32  KEVRRALLDADVNFKIAKEFTKKVQTQALGQDV---LTTLNPGQLMIKLVKDELTVLMGG 88

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLK 159
           +    + +  P +IL+ G+ G GKTT  GKL+  +     K V+L   D +R AAI+QL+
Sbjct: 89  ETVGVNLAGSPTIILMSGLQGSGKTTFSGKLANFLKTKKSKEVLLVGCDVYRPAAINQLQ 148

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +   +   +       ++   ++  A K A+A   +V+IIDTAGRL  +  +M  I ++ 
Sbjct: 149 VVGAQIGVEVYAEVDNNNPVEISKNAVKYAKANGKNVVIIDTAGRLAVDEEMMKEISEIH 208

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           + ++      P   L V+DA TGQ+A+   + F+ +    G+++TK+DG  RGG  + I 
Sbjct: 209 KTIQ------PQETLFVVDAMTGQDAVNTAKAFNDILNFDGVVLTKLDGDTRGGAALSIK 262

Query: 280 VTHKIPVYFLGVGEGINDLEPF 301
                P+ F+G GE ++ L+ F
Sbjct: 263 SVVNKPIKFIGTGEKMDALDVF 284


>gi|4538523|emb|CAB39371.1| ftsY [Corynebacterium glutamicum]
          Length = 135

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 87/137 (63%), Gaps = 2/137 (1%)

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D A++A++A  +   ++ DV+++DTAGRLH ++ LM  +GK+ RV+++        VL 
Sbjct: 1   GDPASIAFDAVAKGVERQADVVLVDTAGRLHTSTGLMDQLGKVKRVVEK--KAVVDEVLL 58

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDAT GQN ++Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG 
Sbjct: 59  VLDATVGQNGMQQARIFREVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGA 118

Query: 296 NDLEPFVAKDFSAVITG 312
           +DL PF  + F   + G
Sbjct: 119 DDLAPFEVEGFVDALLG 135


>gi|116582914|gb|ABK00078.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 140

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 79/118 (66%), Gaps = 1/118 (0%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + E ++ ++ PL KP     +  P VI++ G+NG GKTT IGKL+K     G  V+LAAG
Sbjct: 22  LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           DTFR+AA +QL+ W +R +   V S+   D+AA+ ++A + A+A+ +D+++ DTAGRL
Sbjct: 82  DTFRAAAREQLQAWGERNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138


>gi|239917431|ref|YP_002956989.1| signal recognition particle subunit FFH/SRP54 (srp54) [Micrococcus
           luteus NCTC 2665]
 gi|281414079|ref|ZP_06245821.1| signal recognition particle protein [Micrococcus luteus NCTC 2665]
 gi|239838638|gb|ACS30435.1| signal recognition particle subunit FFH/SRP54 (srp54) [Micrococcus
           luteus NCTC 2665]
          Length = 528

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 148/317 (46%), Gaps = 31/317 (9%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT  F S   K +    DI       D    E+   L+ +D+ V V ++ + ++  +  
Sbjct: 8   RLTATFRSLKGKGRLSEADI-------DATAREIRRALLDADVAVPVVRQFIAQIKERAL 60

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           + +V+      Q+V+  V+E +  +L   ++      +    VI++VG+ G GKTT+ GK
Sbjct: 61  SAEVAQALNPGQQVVKIVNEELVGILGGETRRIQHAKTG-TTVIMLVGLQGAGKTTLAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------SDAAAL 181
           L+  +   G   +L A D  R  A+ QL++  +R          G          D   +
Sbjct: 120 LAHLLKSQGHTPLLVACDLQRPNAVKQLQVGGERAGVPVYAPHPGVSSEFEAATGDPVQV 179

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A +   +A  K  DV+IIDTAGRL  ++ LM     +   +       P  VL V+DA  
Sbjct: 180 ARDGVAEANTKYHDVVIIDTAGRLGVDAELMQQAADIRAAVD------PDEVLFVIDAMI 233

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+A+   + F+   G TG+++TK+DG ARGG  + +      P+ F   GEG+ D E F
Sbjct: 234 GQDAVATAQAFNEGVGFTGVVLTKLDGDARGGAALSVRHVTGKPIMFASTGEGLKDFEVF 293

Query: 302 VAKDFSAVITGCLDYGE 318
                ++ I   LD G+
Sbjct: 294 HPDRMASRI---LDMGD 307


>gi|167043737|gb|ABZ08429.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine crenarchaeote HF4000_APKG3B16]
          Length = 441

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 151/300 (50%), Gaps = 23/300 (7%)

Query: 28  LKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRY-------- 75
           L+  I  I++S  +D+ + +EL    +  L++SD+ V +  +I + + ++          
Sbjct: 9   LRAAIKKIVNSSGVDEELIKELSKDVQRSLLQSDVNVKLVFEITKNIESRSLNEKPPPGL 68

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++   + ++LYD  EL    L+     F++  S + + +L++G+ G GKTTV  KL++ +
Sbjct: 69  SRKDHIVKILYD--ELAK--LLGNDTEFHFK-SGKINKVLLLGIQGSGKTTVASKLARFL 123

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  G +V +   DTFR  A+ QL+   +++  +    E   D+  +     K  ++  +D
Sbjct: 124 SKQGYRVGVIGADTFRPGALVQLRTMCEKSDVEVYGDEKNKDSPQVVKNGLKHFESSNLD 183

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           +++IDTAGR      L+  + ++ +        +P   L V+D T GQ    Q E FH +
Sbjct: 184 IILIDTAGRHKEEKDLLDEMKQINKAA------SPDLALLVVDGTIGQQCHAQAEAFHKI 237

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               G+I+TK+D +A+GGG +         V ++G GE I+DLE F    F   + G  D
Sbjct: 238 VPVGGIIITKLDSSAKGGGALAASAATGAQVMYIGTGERIDDLETFSPTRFVGRLLGMGD 297


>gi|170038031|ref|XP_001846857.1| signal recognition particle receptor subunit alpha [Culex
           quinquefasciatus]
 gi|167881443|gb|EDS44826.1| signal recognition particle receptor subunit alpha [Culex
           quinquefasciatus]
          Length = 625

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 139/293 (47%), Gaps = 41/293 (13%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP--- 98
           ++L+D LI  ++   ++ K+ E +  K   K     D     V   ++E + ++L P   
Sbjct: 331 DKLKDHLISKNVATDISHKLCESVAVKLEGKVLGTFDTIAATVKNTLTEALVQILSPKRR 390

Query: 99  ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              L        + RP+V+   GVNGVGK+T + K+   + +    V++AA DTFR+ A+
Sbjct: 391 VDILRDCMEAKKNKRPYVMSFCGVNGVGKSTNLAKICFWLIENNFNVLIAACDTFRAGAV 450

Query: 156 DQLKIW-------------ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QL+                 R+         G DAA +A EA + A    VD+++IDTA
Sbjct: 451 EQLRTHMRHLNALHPPEKHGGRSMVQLYEKGYGKDAAGIAMEAIRHANDTGVDIVLIDTA 510

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259
           GR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ A+A  +  
Sbjct: 511 GRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYSSN 564

Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                  G+++TK D    + G  I +      P+ F+G G+   DL+   AK
Sbjct: 565 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKKLNAK 617


>gi|320008298|gb|ADW03148.1| signal recognition particle protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 515

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 133/267 (49%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIANIKERARGAEVSQALNPAQQVVKIVNEELVGILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +   + P VI++ G+ G GKTT+ GKL   +   G   +L A D  R  A++Q
Sbjct: 88  GETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKLGLWLKAQGHSPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D  A+A ++ + A+AK  D++I+DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVAVAKDSIEFAKAKVHDIVIVDTAGRLGIDEELMRQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I       + F   GE + D + F
Sbjct: 261 ALSIAHVTGKQIMFASNGEKLEDFDAF 287


>gi|217964047|ref|YP_002349725.1| signal recognition particle protein [Listeria monocytogenes HCC23]
 gi|217333317|gb|ACK39111.1| signal recognition particle protein [Listeria monocytogenes HCC23]
 gi|307571383|emb|CAR84562.1| signal recognition particle protein [Listeria monocytogenes L99]
          Length = 450

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSAD- 168
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +     
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPV 160

Query: 169 -FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
            F+  ++      +A +A  +A+ + +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 161 FFLGDQVSP--VEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  LE F     ++ I G  D
Sbjct: 273 FIATGEKMEALETFHPDRMASRILGMGD 300


>gi|315924205|ref|ZP_07920431.1| signal recognition particle protein [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622607|gb|EFV02562.1| signal recognition particle protein [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 449

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 147/302 (48%), Gaps = 21/302 (6%)

Query: 28  LKEGITDIISSRR----LDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           L E   DI +  R    LD+        E++  L+ +D+   V ++  + +  +   +++
Sbjct: 7   LSEKFQDIFAGMRRKGKLDEADIKAANREIKLALLEADVNFKVVKRFTKAVSERAQGEEI 66

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                  Q+ +  V++ + ++L    KP     S   ++ ++VG+ G GKTT  GK++  
Sbjct: 67  LKSLTPGQQYIKVVNDEMTRLLGGEIKPLELQKSDL-NIFMMVGLQGAGKTTTAGKIANL 125

Query: 135 M-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +  +  LK +L A D +R AAIDQLK+  ++            +   +A +A   AQ + 
Sbjct: 126 LRKENKLKPLLVACDVYRPAAIDQLKVLGEQLDIPVYTMPGMKEPRIIANQAISYAQKQG 185

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            +++I+DTAGRL  +  LM  +  +  ++       P   L V+D  TGQ ++   + F 
Sbjct: 186 YNLVILDTAGRLQIDERLMRELMDIKELVH------PTETLLVVDGMTGQESVNVAKSFD 239

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +G+++TK+DG  RGG  + +  T   P+ F+G GE ++DLE F     ++ I G 
Sbjct: 240 DQLDISGVVLTKLDGDTRGGAALSVTYTTGKPIVFIGSGEKLSDLERFHPDRMASRILGM 299

Query: 314 LD 315
            D
Sbjct: 300 GD 301


>gi|328955639|ref|YP_004372972.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Coriobacterium glomerans PW2]
 gi|328455963|gb|AEB07157.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Coriobacterium glomerans PW2]
          Length = 493

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 7/205 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+VI++VG+ G GKTT   KL+  +   G   +LAA D +R AA DQL            
Sbjct: 100 PNVIMLVGLQGSGKTTAAVKLAYLLKKQGRSPILAAADVYRPAAADQLSALGSEIEVPVF 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G+D   +A  + ++A     DV+I+DTAGRL  +  +M     + R +K      P
Sbjct: 160 RGD-GADPIEIARGSIREAVDTMRDVVIVDTAGRLQIDEQMMQEAVDIKRAVK------P 212

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+DA TGQ+ +  V  F       G+I++K+DG ARGGG + I      P+ F+ 
Sbjct: 213 DQILMVVDAMTGQDIVNVVSTFAERTDFDGVIISKLDGDARGGGALSIRAVTGKPIKFVS 272

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           +GE  + LE F     +  I G  D
Sbjct: 273 MGEKPDSLEVFYPDRMAKRILGMGD 297


>gi|313115226|ref|ZP_07800709.1| signal recognition particle protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622455|gb|EFQ05927.1| signal recognition particle protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 451

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 138/275 (50%), Gaps = 16/275 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+   VA+    ++  +   ++V       Q+V+  V+E +   LM  S+ 
Sbjct: 34  EVRMALLEADVNYKVAKDFCAKVSERAMGQEVMESLTPAQQVVKIVNEELVA-LMGGSEA 92

Query: 103 FNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
              +  ++   +I++ G+ G GKTT   KL+K     G + ML A D +R AAIDQL++ 
Sbjct: 93  ARLNIKNKGQTIIMLCGLQGNGKTTHAAKLAKYFIKQGRRPMLVACDIYRPAAIDQLQVV 152

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +  A  V +  G+    +A +A   A+    D++I+DTAGRL  + +LM       + 
Sbjct: 153 GKQAGAP-VFTLPGAKPPEIAKKALAHAKDYGNDIVILDTAGRLQIDDVLM-------QE 204

Query: 222 LKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           L  +    P    L V+DA  GQ+A+   + F+   G  G+I+TK DG  RGG  + ++ 
Sbjct: 205 LVDIKEAVPVDETLLVVDAMAGQDAVNVAKTFNEKVGIDGIILTKTDGDTRGGAALSVLA 264

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+ F G GE ++DL+ F     ++ I G  D
Sbjct: 265 VTGKPIKFQGTGEKLDDLDVFHPDRMASRILGMGD 299


>gi|121608473|ref|YP_996280.1| signal recognition particle protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121553113|gb|ABM57262.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Verminephrobacter eiseniae EF01-2]
          Length = 454

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT   KL+K + +    KV+  +GD +R AAI+QL+    +  
Sbjct: 97  AQPPAVILMAGLQGAGKTTTTAKLAKYLIEKRKKKVLTVSGDVYRPAAIEQLQTVTRQAG 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             F  S        +A  A   A+    DVL++DTAGRL  +  +M  I  +   L    
Sbjct: 157 GAFFPSLPEQKPLDIALAALDHARKHYFDVLLVDTAGRLAIDQAMMEEIKALHAALN--- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+     F      TG+++TK+DG +RGG  + +     +P+
Sbjct: 214 ---PVETLFVVDAMQGQDAINTARAFREALPLTGIVLTKLDGDSRGGAALSVRQITGVPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F GV E ++ L+ F A+  +  I G  D
Sbjct: 271 KFAGVSEKLDGLDVFDAERHAGRILGMGD 299


>gi|78042210|dbj|BAE46928.1| goadsporin biosynthetic protein [Streptomyces sp. TP-A0584]
          Length = 518

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 139/281 (49%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++++  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIKQVKERALGAEVSGALNPAQQVIKIVNEELISILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P VI++ G+ G GKTT+ GKL   +       +L A D  R  A++Q
Sbjct: 88  GETRRLKYAKTG-PTVIMLAGLQGAGKTTLAGKLGHWLKQQKHTPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + ADR    F   E G+   D   +A ++ + A+ ++ DV I+DTAGRL  ++ +M  
Sbjct: 147 LNVVADRAGVAFYGPEPGNGVGDPVKVARDSIEYAKQRQYDVFIVDTAGRLGIDAEMMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +   ++      P  VL V+DA  GQ+A+   + F      TG++++K+DG ARGG 
Sbjct: 207 ASDIRAAVQ------PDEVLFVVDAMVGQDAVTTAQAFLDGVDFTGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +       + F   GE ++D + F     ++ I G  D
Sbjct: 261 ALSVAHVTGRQIMFASNGEKVDDFDAFHPDRMASRILGMGD 301


>gi|326333682|ref|ZP_08199919.1| signal recognition particle protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325948588|gb|EGD40691.1| signal recognition particle protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 520

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 19/293 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L     +I    RL D        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FATLSDRLATTFKNIRGKGRLTDADIDATAREIRIALLEADVALPVVREFVARVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+++  V++ +  +L   ++   +  +  P VI++ G+ G GKTT+  KL
Sbjct: 62  EEVSQALNPAQQIVKIVNDELVTILGGETRRLRYAKTG-PTVIMLAGLQGAGKTTLAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +  + + G   +L A D  R  A++QL++  +R        + G+   +   +A +A ++
Sbjct: 121 ALWLKEQGKAPLLVAADLQRPNAVNQLQVNGERVGVPVYAPQPGNGVGNPVDVARDAVEE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+I+DTAGRL  +  LM     +   +       P  VL V+DA  GQ+A+  
Sbjct: 181 AKRKLHDVVIVDTAGRLGIDEELMKQAADIKAAVN------PDEVLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + F    G  G+++TK+DG ARGG  + IV     PV F   GE + D + F
Sbjct: 235 AQAFLDGVGYDGVVLTKLDGDARGGAALSIVQITGKPVMFASNGEKMTDFDLF 287


>gi|306836410|ref|ZP_07469388.1| cell division protein FtsY [Corynebacterium accolens ATCC 49726]
 gi|304567770|gb|EFM43357.1| cell division protein FtsY [Corynebacterium accolens ATCC 49726]
          Length = 136

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/136 (40%), Positives = 86/136 (63%), Gaps = 2/136 (1%)

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A++A      ++VDV+++DTAGRLH ++ LM  +GK+ RV+++        VL V
Sbjct: 1   DPASVAFDAVATGVEQQVDVVLVDTAGRLHTSTDLMDQLGKVKRVVEK--KTEVDEVLLV 58

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN L Q  +F  V   +G+++TK+DGTA+GG +  +     +PV  +G+GEG +
Sbjct: 59  LDATVGQNGLAQARIFREVVDISGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGAD 118

Query: 297 DLEPFVAKDFSAVITG 312
           DL PF  + F   + G
Sbjct: 119 DLAPFEVEGFVDALLG 134


>gi|289704592|ref|ZP_06501025.1| signal recognition particle protein [Micrococcus luteus SK58]
 gi|289558712|gb|EFD51970.1| signal recognition particle protein [Micrococcus luteus SK58]
          Length = 528

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 140/300 (46%), Gaps = 28/300 (9%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT  F S   K +    DI       D    E+   L+ +D+ V V ++ + ++  +  
Sbjct: 8   RLTATFRSLKGKGRLSEADI-------DATAREIRRALLDADVAVPVVRQFIAQIKERAL 60

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V+      Q+V+  V+E +  +L   ++      +    VI++VG+ G GKTT+ GK
Sbjct: 61  GAEVAQALNPGQQVVKIVNEELVGILGGETRRIQHAKTG-TTVIMLVGLQGAGKTTLAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------SDAAAL 181
           L+  +   G   +L A D  R  A+ QL++  +R          G          D   +
Sbjct: 120 LAHLLKSQGHTPLLVACDLQRPNAVKQLQVGGERAGVPVYAPHPGVSSEFEAATGDPVQV 179

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A +   +A  K  DV+IIDTAGRL  ++ LM     +   +       P  VL V+DA  
Sbjct: 180 ARDGVAEANTKYHDVVIIDTAGRLGVDAELMQQAADIRAAVD------PDEVLFVIDAMI 233

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+A+   + F+   G TG+++TK+DG ARGG  + +      P+ F   GEG+ D E F
Sbjct: 234 GQDAVATAQAFNEGVGFTGVVLTKLDGDARGGAALSVRHVTGKPIMFASTGEGLKDFEVF 293


>gi|329901026|ref|ZP_08272671.1| Signal recognition particle, subunit Ffh SRP54 [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549273|gb|EGF33849.1| Signal recognition particle, subunit Ffh SRP54 [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 457

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P VIL+ G+ G GKTT +GKL+K + +   K V+  + D +R AAI QL+    +  
Sbjct: 101 TQPPAVILMAGLQGAGKTTTVGKLAKFLKEKHKKKVLTVSADVYRPAAIGQLQTVTAQVG 160

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           ADF  S        +A  A   A+    DVLIIDTAGRL  ++ +MA I  +   +K   
Sbjct: 161 ADFFPSLTTDKPVDIALAALDFAKRHYHDVLIIDTAGRLGIDAEMMAEIAALHAAVK--- 217

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+
Sbjct: 218 ---PIETLFVVDAMLGQDAINTAKAFNDTLPLTGIVLTKLDGDARGGAALSVRHITGKPI 274

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G  E ++ LE F  +  +  I G  D
Sbjct: 275 KFAGTAEKLDGLEAFDPQRMANRILGMGD 303


>gi|308232280|ref|ZP_07415541.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu001]
 gi|308380512|ref|ZP_07490199.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu011]
 gi|308214486|gb|EFO73885.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu001]
 gi|308361235|gb|EFP50086.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu011]
          Length = 528

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D        E+   L+ +D+ + V +  +  +  +   
Sbjct: 5   FESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARG 64

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P V+++ G+ G GKTT+ GKL
Sbjct: 65  AEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTP-PTVVMLAGLQGSGKTTLAGKL 123

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184
           + ++   G   +L A D  R AA++QL++  +R          G+       D  A+A  
Sbjct: 124 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 183

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA     IR     D   P  VL VLDA  GQ+
Sbjct: 184 GLAEARAKHFDVVIVDTAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQD 237

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+     F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 238 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 297

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 298 RMASRILGMGD 308


>gi|260061940|ref|YP_003195020.1| signal recognition particle protein [Robiginitalea biformata
           HTCC2501]
 gi|88786074|gb|EAR17243.1| signal recognition particle protein [Robiginitalea biformata
           HTCC2501]
          Length = 431

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 105/211 (49%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADR 164
           D    P VIL+ G+ G GKTT  GKL+  +     K  +L A D +R AAIDQL +  D+
Sbjct: 82  DLQGSPAVILMSGLQGSGKTTFSGKLANFLKSKKTKNPLLVACDVYRPAAIDQLHVVGDQ 141

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                   +   D   LA      A+    +V+IIDTAGRL  +  +M  I   IR    
Sbjct: 142 IGVPVFSDKEVKDPVQLAKAGVAHAKQNGHNVVIIDTAGRLAVDEQMMTEISN-IR---- 196

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            D  +P  +L V+DA TGQ+A+   + F+ V    G+++TK+DG  RGG  I I      
Sbjct: 197 -DAVSPGEILFVVDAMTGQDAVNTAKAFNDVLDFDGVVLTKLDGDTRGGAAISIKSVVDK 255

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +  ++ F     +  I G  D
Sbjct: 256 PIKFIGTGEKMEAIDVFHPSRMADRILGMGD 286


>gi|306973321|ref|ZP_07485982.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu010]
 gi|308357351|gb|EFP46202.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu010]
          Length = 525

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P V+++ G+ G GKTT+ GKL
Sbjct: 62  AEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTP-PTVVMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184
           + ++   G   +L A D  R AA++QL++  +R          G+       D  A+A  
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA     IR     D   P  VL VLDA  GQ+
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+     F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|240170562|ref|ZP_04749221.1| signal recognition particle protein Ffh [Mycobacterium kansasii
           ATCC 12478]
          Length = 531

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 150/311 (48%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTSALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFVHRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V++ +  +L   ++   +  +  P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNDELIGILGGQTRELVFAKTP-PTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184
           + ++   G   +L A D  R AA++QL++   R          G+       D  A+A  
Sbjct: 121 AARLKSQGHTPLLVACDLQRPAAVNQLQVVGQRAGVTVFAPHPGASPESGPGDPVAVAAA 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA   +   +   +DP     VL VLDA  GQ+
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMA---QAAAIRDSIDPD---EVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   + F    G +G+++TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVATAQAFGEGVGFSGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|118617614|ref|YP_905946.1| signal recognition particle protein Ffh [Mycobacterium ulcerans
           Agy99]
 gi|118569724|gb|ABL04475.1| signal recognition particle protein Ffh [Mycobacterium ulcerans
           Agy99]
          Length = 523

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFVHRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             VS      Q+V+  V+E +  +L   ++   +  +  P V+++ G+ G GKTT+ GKL
Sbjct: 62  AVVSGALNPAQQVVKIVNEELVGILGGQTRELVFAKTP-PTVVMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184
           + ++   G   +L A D  R AA++QL++   R         +G+       D  A+A  
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGQRAGVPVFAPHLGASPESGPGDPVAVAAA 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +AQAK  DV+I+DTAGRL  +  LMA    + + +       P  VL VLDA  GQ+
Sbjct: 181 GLAEAQAKHFDVVIVDTAGRLGIDEELMAQASAIRKAIN------PDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   + F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVATAQAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|15610053|ref|NP_217432.1| signal recognition particle protein [Mycobacterium tuberculosis
           H37Rv]
 gi|15842459|ref|NP_337496.1| signal recognition particle protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31794092|ref|NP_856585.1| signal recognition particle protein [Mycobacterium bovis AF2122/97]
 gi|121638797|ref|YP_979021.1| putative signal recognition particle protein ffh [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148662760|ref|YP_001284283.1| signal recognition particle protein Ffh [Mycobacterium tuberculosis
           H37Ra]
 gi|148824105|ref|YP_001288859.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           F11]
 gi|167969545|ref|ZP_02551822.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           H37Ra]
 gi|215404890|ref|ZP_03417071.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           02_1987]
 gi|215428357|ref|ZP_03426276.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           T92]
 gi|218754669|ref|ZP_03533465.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           GM 1503]
 gi|224991289|ref|YP_002645978.1| putative signal recognition particle protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|254233006|ref|ZP_04926333.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           C]
 gi|254365555|ref|ZP_04981600.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254551987|ref|ZP_05142434.1| putative signal recognition particle protein [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187935|ref|ZP_05765409.1| putative signal recognition particle protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|260202051|ref|ZP_05769542.1| putative signal recognition particle protein [Mycobacterium
           tuberculosis T46]
 gi|260206234|ref|ZP_05773725.1| putative signal recognition particle protein [Mycobacterium
           tuberculosis K85]
 gi|289444471|ref|ZP_06434215.1| signal recognition particle protein [Mycobacterium tuberculosis
           T46]
 gi|289448581|ref|ZP_06438325.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           CPHL_A]
 gi|289575621|ref|ZP_06455848.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           K85]
 gi|289746715|ref|ZP_06506093.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           02_1987]
 gi|289751581|ref|ZP_06510959.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           T92]
 gi|289763092|ref|ZP_06522470.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           GM 1503]
 gi|294993988|ref|ZP_06799679.1| signal recognition particle protein [Mycobacterium tuberculosis
           210]
 gi|306968984|ref|ZP_07481645.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu009]
 gi|307085628|ref|ZP_07494741.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu012]
 gi|54039627|sp|P66845|SRP54_MYCBO RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|54042223|sp|P66844|SRP54_MYCTU RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|1405951|emb|CAA98978.1| PROBABLE SIGNAL RECOGNITION PARTICLE PROTEIN FFH (FIFTY-FOUR
           HOMOLOG) (SRP PROTEIN) [Mycobacterium tuberculosis
           H37Rv]
 gi|13882763|gb|AAK47310.1| signal recognition particle protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31619687|emb|CAD96627.1| PROBABLE SIGNAL RECOGNITION PARTICLE PROTEIN FFH (FIFTY-FOUR
           HOMOLOG) [Mycobacterium bovis AF2122/97]
 gi|121494445|emb|CAL72926.1| Probable signal recognition particle protein ffh [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|124602065|gb|EAY61075.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           C]
 gi|134151068|gb|EBA43113.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148506912|gb|ABQ74721.1| signal recognition particle protein Ffh [Mycobacterium tuberculosis
           H37Ra]
 gi|148722632|gb|ABR07257.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           F11]
 gi|224774404|dbj|BAH27210.1| putative signal recognition particle protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289417390|gb|EFD14630.1| signal recognition particle protein [Mycobacterium tuberculosis
           T46]
 gi|289421539|gb|EFD18740.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           CPHL_A]
 gi|289540052|gb|EFD44630.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           K85]
 gi|289687243|gb|EFD54731.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           02_1987]
 gi|289692168|gb|EFD59597.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           T92]
 gi|289710598|gb|EFD74614.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           GM 1503]
 gi|308353486|gb|EFP42337.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu009]
 gi|308364855|gb|EFP53706.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu012]
 gi|323718527|gb|EGB27698.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904530|gb|EGE51463.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           W-148]
          Length = 525

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P V+++ G+ G GKTT+ GKL
Sbjct: 62  AEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTP-PTVVMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184
           + ++   G   +L A D  R AA++QL++  +R          G+       D  A+A  
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA     IR     D   P  VL VLDA  GQ+
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+     F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|315121876|ref|YP_004062365.1| signal recognition particle protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495278|gb|ADR51877.1| signal recognition particle protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 461

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 129/261 (49%), Gaps = 15/261 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD---VSELIHKMLMPLSKPFN 104
           E+    + +D+ + V Q + E +  K  AK   + + +     V +++H  L+ +    N
Sbjct: 33  EIRRTFLEADVSLEVVQALNERIQEK--AKGAKILKSIQPGQMVVKIVHDELIEVLGTEN 90

Query: 105 WDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKI 160
                 +  P VI++VG+ G GKTT   K++  +     K ML A  D  R AA +QL+ 
Sbjct: 91  VGLDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKMLMASLDIHRPAAQEQLRY 150

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
             ++   D +        A +A  A + A+ +  DV+I+DTAGR H N  LM  I ++  
Sbjct: 151 LGEKIQVDTLEVVPKQLPAEIATRAIQNARDRGYDVVILDTAGRNHINESLMQEISEVKS 210

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           +        PH +L V DA TGQ+A+     F    G TG+I+T+MDG  RGG  + +  
Sbjct: 211 LTN------PHEILLVADALTGQDAVHLARNFDEKIGLTGIILTRMDGDGRGGAALSMRF 264

Query: 281 THKIPVYFLGVGEGINDLEPF 301
               P+  +G GE I+DLE F
Sbjct: 265 VTGKPIKAIGTGEKIDDLENF 285


>gi|116873236|ref|YP_850017.1| signal recognition particle protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742114|emb|CAK21238.1| signal recognition particle protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 450

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+ + +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  +E F     ++ I G  D
Sbjct: 273 FVATGEKMEAIETFHPDRMASRILGMGD 300


>gi|16800981|ref|NP_471249.1| hypothetical protein lin1915 [Listeria innocua Clip11262]
 gi|16414416|emb|CAC97145.1| ffh [Listeria innocua Clip11262]
          Length = 450

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 158

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+ + +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 159 PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 212

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 213 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 272

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  +E F     ++ I G  D
Sbjct: 273 FVATGEKMEAIETFHPDRMASRILGMGD 300


>gi|302335829|ref|YP_003801036.1| signal recognition particle subunit FFH/SRP54 (srp54) [Olsenella
           uli DSM 7084]
 gi|301319669|gb|ADK68156.1| signal recognition particle subunit FFH/SRP54 (srp54) [Olsenella
           uli DSM 7084]
          Length = 465

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 133/276 (48%), Gaps = 13/276 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+   V +  V    E+ +T      +S  Q V+  V + + ++L      
Sbjct: 33  EIRMALLEADVNYRVVKGFVASCKEKCMTAEVLDSLSPAQNVVRIVLDELTRLLGSTESK 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                +  P+VI++VG+ G GKTT   KL+  +   G   +LAA DT R AA DQL+   
Sbjct: 93  LVLAQNRTPNVIMMVGLQGSGKTTASAKLAYLLRREGHSPLLAACDTHRPAAADQLETLG 152

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                     + G DA  +A EA + A     D++I+DTAGRL  +  +M     +   +
Sbjct: 153 SEIGVGVYRGD-GKDAVRVATEAIRAAVDHLNDIVIVDTAGRLQIDEEMMQEAVDIKSAV 211

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           K      P  +L V+DA TGQ+ +  V  F +     G+IM+K+DG ARGGG + +    
Sbjct: 212 K------PDQILMVVDAMTGQDIVNVVREFASRVDFDGVIMSKLDGDARGGGALSVREVT 265

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD-YG 317
             P+ ++ +GE  + LE F     +  I G  D YG
Sbjct: 266 GKPIKYVSLGEKPDSLEVFHPDRMAKRILGMGDVYG 301


>gi|33519643|ref|NP_878475.1| GTP-binding signal recognition particle protein [Candidatus
           Blochmannia floridanus]
 gi|33517306|emb|CAD83691.1| 4.5S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Candidatus
           Blochmannia floridanus]
          Length = 457

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 146/298 (48%), Gaps = 28/298 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDL----LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S K+ + I +I+ S+R+      +  D+    L+ SD+ ++V Q  VE  L K   
Sbjct: 2   FTSLSKKMSQSIRNIMYSKRVTKYDVSKYLDIVQRSLLESDVALSVVQSFVE--LVKDNI 59

Query: 77  KDVSVQRVLYDVSELI----HKMLMPLSKPFN---WDFSHRPHV-ILVVGVNGVGKTTVI 128
             +++        E I    H ++  +    N    + + R    +L+VG  G GKTT  
Sbjct: 60  IKINIDSCCISGPEFIKILRHALIKAMKCEVNGQDLNLNDRSLTKLLIVGAQGSGKTTTT 119

Query: 129 GKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV---CSEIGSDAAALAYE 184
           GKL++ +      KV++ + D +RSAAI+QLK++A     D      S IG     +  +
Sbjct: 120 GKLARFLKVRKNKKVLVVSTDVYRSAAINQLKVFASSEKIDCFEDYTSNIG--PVQIVQK 177

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+    +V+++DTAG L  +      +  + +V+       P  VL V+D+  GQ 
Sbjct: 178 AIDYAKLNFYNVIVVDTAGCLKTDCNAFLELVDIYKVIN------PEEVLFVVDSMIGQG 231

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGG-GLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           ++  + MF      TG+++TK+DG A GG  L    +T K P+ F+G GE I+ LE F
Sbjct: 232 SIDIINMFDKNLSLTGIVVTKLDGNACGGIALSAKFLTGK-PIKFIGTGESIDTLEVF 288


>gi|308369898|ref|ZP_07419448.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu002]
 gi|308371174|ref|ZP_07424073.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu003]
 gi|308372291|ref|ZP_07428112.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu004]
 gi|308373572|ref|ZP_07432906.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu005]
 gi|308374725|ref|ZP_07437149.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu006]
 gi|308326097|gb|EFP14948.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu002]
 gi|308329661|gb|EFP18512.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu003]
 gi|308333800|gb|EFP22651.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu004]
 gi|308337194|gb|EFP26045.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu005]
 gi|308340925|gb|EFP29776.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu006]
          Length = 528

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D        E+   L+ +D+ + V +  +  +  +   
Sbjct: 5   FESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARG 64

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P V+++ G+ G GKTT+ GKL
Sbjct: 65  AEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTP-PTVVMLAGLQGSGKTTLAGKL 123

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184
           + ++   G   +L A D  R AA++QL++  +R          G+       D  A+A  
Sbjct: 124 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 183

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA     IR     D   P  VL VLDA  GQ+
Sbjct: 184 GLAEARAKHFDVVIVDTAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQD 237

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+     F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 238 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 297

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 298 RMASRILGMGD 308


>gi|293392761|ref|ZP_06637079.1| signal recognition particle protein [Serratia odorifera DSM 4582]
 gi|291424620|gb|EFE97831.1| signal recognition particle protein [Serratia odorifera DSM 4582]
          Length = 322

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 94/174 (54%), Gaps = 6/174 (3%)

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           +++ + D +R AAI QL+  A+    DF  S+       +   A +QA+ K  DVLI+DT
Sbjct: 1   MLVVSADVYRPAAIKQLETLAEGVGIDFFPSDAKDKPIDIVNRALQQAKLKFYDVLIVDT 60

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    + F+     TG+
Sbjct: 61  AGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAKAFNEALPLTGV 114

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 115 VLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRILGMGD 168


>gi|282861368|ref|ZP_06270433.1| signal recognition particle protein [Streptomyces sp. ACTE]
 gi|282564026|gb|EFB69563.1| signal recognition particle protein [Streptomyces sp. ACTE]
          Length = 515

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIANVKERARGVEVSQALNPAQQVVKIVNEELVGILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +   + P VI++ G+ G GKTT+ GKL   +   G   +L A D  R  A++Q
Sbjct: 88  GETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKLGLWLKGQGHSPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + ADR        E G+   D   +A ++ + A+AK  D++I+DTAGRL  +  LM  
Sbjct: 147 LSVVADRAGVAVYAPEPGNGVGDPVKVAQDSIEYAKAKVHDIVIVDTAGRLGIDEELMRQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I       + F   GE + D + F
Sbjct: 261 ALSIAHVTGKQIMFASNGEKLEDFDAF 287


>gi|159471143|ref|XP_001693716.1| subunit of the signal recognition particle [Chlamydomonas
           reinhardtii]
 gi|158283219|gb|EDP08970.1| subunit of the signal recognition particle [Chlamydomonas
           reinhardtii]
          Length = 503

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 6/201 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            V++ VG+ G GKTT   K +      G K  L   DT+R+ A DQLK  A +    F  
Sbjct: 106 QVVMFVGLQGSGKTTTCTKYAYYYKKKGWKPALVCADTYRAGAFDQLKQNATKAQIPFYG 165

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S   +D AA+A +   + + +  D++I+DT+GR    + L   + ++   +      +P 
Sbjct: 166 SYKETDPAAIAQQGVLRFREEGRDLIIVDTSGRHKQEAALFEEMKQVAAAV------SPD 219

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            ++ V+D + GQ A  Q + F        +I+TK+DG A+GGG +  V   K P+ FLG 
Sbjct: 220 VIIFVMDGSIGQAAFDQAKAFKEAVEVGAVIITKLDGHAKGGGALSAVSATKSPIIFLGT 279

Query: 292 GEGINDLEPFVAKDFSAVITG 312
           GE ++  E F  K F   + G
Sbjct: 280 GEHMDQFESFETKRFVQRLLG 300


>gi|124007453|ref|ZP_01692159.1| signal recognition particle protein [Microscilla marina ATCC 23134]
 gi|123987109|gb|EAY26858.1| signal recognition particle protein [Microscilla marina ATCC 23134]
          Length = 445

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 140/281 (49%), Gaps = 23/281 (8%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL- 99
           +E+   L+ +D+   VA+++ +E+  +   +     +VL +V       +++H+ L  L 
Sbjct: 32  KEIRRALVDADVNYKVAKQVTDEIKEEALGR-----KVLINVEPGQLLVKIVHEKLTALM 86

Query: 100 -SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQ 157
             +    +    P V+L+ G+ G GKTT  GKL+  ++     KV+L A D +R AAI+Q
Sbjct: 87  GGEEEEINIEGDPAVVLMSGLQGSGKTTFSGKLANFINKKRNKKVLLVACDVYRPAAINQ 146

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++  ++   +        +  +++  A K A+     V+I+DTAGRL  +  +M  I  
Sbjct: 147 LQVVGEQIGVEVYAEPENKNPVSISQNAIKYAKENNHKVVIVDTAGRLAVDEEMMKEIED 206

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +   +K      P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + 
Sbjct: 207 VKNAIK------PSETLFVVDSMTGQDAVNTAKTFNERINFDGVVLTKLDGDTRGGAALS 260

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           I      P+ F G GE ++ +  F  +  +  I   LD G+
Sbjct: 261 IRAVVNKPIKFTGTGEKMDAINVFRPEGMAGRI---LDMGD 298


>gi|19074626|ref|NP_586132.1| SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT [Encephalitozoon
           cuniculi GB-M1]
 gi|19069268|emb|CAD25736.1| SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT [Encephalitozoon
           cuniculi GB-M1]
          Length = 425

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 110/205 (53%), Gaps = 19/205 (9%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-----AD 168
           I  VGVNGVGK+T + K+   +    L+V +AA DTFR+ AI+QLK   +R         
Sbjct: 219 ICFVGVNGVGKSTSLAKICYWLLQNKLRVYIAACDTFRAGAIEQLKTHVERFKLGGHLVG 278

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F     G D A++A  A ++AQ +  DV++IDTAGR+HN   LMA + K++++      +
Sbjct: 279 FYEKGYGKDDASVARCAIQEAQHEGYDVILIDTAGRMHNKKNLMASLTKLMKI------N 332

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAV-------AGTTGLIMTKMDGT-ARGGGLIPIVV 280
            P  ++ V +A  G ++L  +  F+              +++TK+D    R G ++ +  
Sbjct: 333 RPDHIIYVGEALVGSDSLDHIREFNKAIRDADQSRKIDSILLTKVDTVDDRIGQILNMAF 392

Query: 281 THKIPVYFLGVGEGINDLEPFVAKD 305
           +   P+ FLGVG+  +DL    ++D
Sbjct: 393 SSHAPILFLGVGQSNSDLSKIGSED 417


>gi|58221327|gb|AAW68306.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|193735106|gb|ACF20062.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 140

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 78/118 (66%), Gaps = 1/118 (0%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + E ++ ++ PL KP     +  P VI++ G+NG GKTT IGKL+K     G  V+LAAG
Sbjct: 22  LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           DTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A+A+ +D+++ DTAGRL
Sbjct: 82  DTFRAAAREQLQAWGGRNNVT-VISQTAGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138


>gi|58221335|gb|AAW68310.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|193735094|gb|ACF20056.1| regulatory protein [Neisseria gonorrhoeae]
 gi|193735098|gb|ACF20058.1| regulatory protein [Neisseria gonorrhoeae]
 gi|193735102|gb|ACF20060.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 140

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 78/118 (66%), Gaps = 1/118 (0%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + E ++ ++ PL KP     +  P VI++ G+NG GKTT IGKL+K     G  V+LAAG
Sbjct: 22  LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           DTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A+A+ +D+++ DTAGRL
Sbjct: 82  DTFRAAAREQLQAWGGRNNVT-VISQTAGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138


>gi|168188032|ref|ZP_02622667.1| signal recognition particle protein [Clostridium botulinum C str.
           Eklund]
 gi|169294122|gb|EDS76255.1| signal recognition particle protein [Clostridium botulinum C str.
           Eklund]
          Length = 451

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 144/269 (53%), Gaps = 14/269 (5%)

Query: 53  LIRSDIGVAVAQKIV----EELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   + ++ V    E+ L +   K ++  Q+V+  V++ + +++   S     +F
Sbjct: 39  LLEADVNYKIVRQFVKTTGEKCLGEEVMKSLTPGQQVVKIVNDELKELMG--STESKIEF 96

Query: 108 SHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S++   VI++VG+ G GKTT+ GKL+ ++     K +L A D +R AAI QL++   +  
Sbjct: 97  SNKGLTVIMLVGLQGAGKTTMAGKLALQLRKNNKKPLLVACDIYRPAAIKQLQVVGKQID 156

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +A  + + A+    +V+IIDTAGRLH +  LM  + + I++     
Sbjct: 157 VPVFSMGDKVSPVDIAKASIEHAKNNNNNVVIIDTAGRLHIDEALMEEL-ENIKI----- 210

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+ +L V+D+ TGQ+A+   E F+     +G+I+TK+DG  RGG  + I      P+
Sbjct: 211 SVEPNEILLVVDSMTGQDAVNVSETFNNKLDISGVILTKLDGDTRGGAALSIKAVTGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            ++G+GE +NDLE F     ++ I G  D
Sbjct: 271 KYVGLGEKMNDLEVFHPDRMASRILGMGD 299


>gi|193206261|ref|NP_741303.2| hypothetical protein F38A1.8 [Caenorhabditis elegans]
          Length = 625

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 143/282 (50%), Gaps = 37/282 (13%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKP--- 102
           E++ + LI  ++    A+KI + +++K   K V+   RV  +V   + + L+ L  P   
Sbjct: 337 EKMRENLILKNVASEPAEKICQSVVSKLEGKVVNNFSRVAQEVKTAVRESLVQLLTPKHR 396

Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                         RP+VI+  GVNGVGK+T + K++  +++   +V++AAGDTFR+ A+
Sbjct: 397 VDILRDVIEAKRDGRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIAAGDTFRAGAV 456

Query: 156 DQLKIWADRTSADFVCSEI-------GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           +QL+  A R   D   + +       G D A LA  A K+A  +  DV+++DTAGR+ +N
Sbjct: 457 EQLRTHA-RYLNDLHKNSVLLHEQGYGKDPAGLAAAAIKKAAEQDFDVVLVDTAGRMQDN 515

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGTT--- 259
             LM  + K+IRV      + P  VL V +A  G  A+ Q+  F      HA  G     
Sbjct: 516 EPLMRELAKLIRV------NEPDLVLFVGEALVGNEAVDQLVKFNEALANHASPGQKPRL 569

Query: 260 --GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
             G+++TK D    + G  + +      P+ F+G G+  +DL
Sbjct: 570 IDGIVLTKFDTIDDKVGAAVSMTYITGQPIVFVGCGQTYSDL 611


>gi|150864210|ref|XP_001382942.2| GTP binding signal recognition particle receptor [Scheffersomyces
           stipitis CBS 6054]
 gi|149385466|gb|ABN64913.2| GTP binding signal recognition particle receptor [Scheffersomyces
           stipitis CBS 6054]
          Length = 545

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 32/286 (11%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKR-YAKDVSVQRVLYDVSELIHKMLMP-LSKP 102
           V ++  D LI  +I    A+ I++++  K    ++V++      ++E + K+L P +S  
Sbjct: 258 VSKKFNDQLISKNIAPNTAKIIIDKIRDKLGNQRNVTLALYKQTLTEELTKILTPNVSTD 317

Query: 103 FNWDFSH-----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             +D        RP+VI VVGVNGVGK+T + KL+       L V++ A DTFRS A++Q
Sbjct: 318 LLYDIKRNSTNPRPYVISVVGVNGVGKSTNLAKLAYWFLQNNLNVLICACDTFRSGAVEQ 377

Query: 158 LKIWAD---RTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           LK+  +   R ++     E            G      A  A + A ++K D+++IDTAG
Sbjct: 378 LKVHVNNLQRLNSQSSNGENKIDIFEKGYGSGDHVVTTAKMAIQHAASEKFDIVLIDTAG 437

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG--- 260
           R H+N+ LMA + K        D   P  ++ V +A  G +++ Q   F+   G      
Sbjct: 438 RTHSNTKLMAPLKKF------GDAANPDKIIMVGEALVGTDSVEQAINFNNAFGNKRSLD 491

Query: 261 -LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
             I++K+D      G +I +V+  K+P+ F+G G+   D++    K
Sbjct: 492 FFIISKVDTVGDLVGTMINMVMATKVPILFVGTGQTYTDIKRLSVK 537


>gi|325180969|emb|CCA15378.1| signal recognition particle putative [Albugo laibachii Nc14]
          Length = 509

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 6/204 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           + ++ VG+ G GKTT I K +      G K  +   DTFR+ A DQLK  A +    F  
Sbjct: 102 NTVMFVGLQGSGKTTSIAKYAHYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRIPFYG 161

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S   +D   +A +   Q +A   +++++DT+GR    + L A + ++   ++      P 
Sbjct: 162 SYTEADPVRIAEQGVAQFRADHYELILVDTSGRHKQETDLFAEMKQVAAAVR------PD 215

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V+ V+D+T GQ    Q   F        +I+TK+DG A+GGG +  V     P+ F G 
Sbjct: 216 DVVFVMDSTIGQAVYDQSSAFVQSVDVGSVIITKLDGHAKGGGALSAVAATGSPIIFYGT 275

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE  ++LE F A+ F + + G  D
Sbjct: 276 GEHFSELETFDAQRFVSRMMGMGD 299


>gi|62733121|gb|AAX95238.1| signal recognition particle protein, putative [Oryza sativa
           Japonica Group]
          Length = 1072

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 95/191 (49%), Gaps = 20/191 (10%)

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G   ML A D +R AAIDQL I   +           +  + +A    K+A++KK DV+I
Sbjct: 612 GKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKNGIKEAKSKKTDVII 671

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN---ALR-------- 247
           +DTAGRL  +  +M+ + ++ R +       P  VL V+DA TGQ    ALR        
Sbjct: 672 VDTAGRLQVDKAMMSELKEVKRAVN------PTEVLLVVDAMTGQEAAFALRLTRISFLI 725

Query: 248 ---QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               V  F+   G TG I+TK+DG +RGG  + I      P+ F+G GE + DLEPF   
Sbjct: 726 WPALVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPD 785

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 786 RMAQRILGMGD 796



 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 142/303 (46%), Gaps = 21/303 (6%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT G  S   KL+ G+ D+++   + + +R+ +   L+ +D+ + V ++ V  +  K  
Sbjct: 74  QLTTGLESAWNKLR-GV-DVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVSSISEKAL 130

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             D+   R +    +L+   L   S     +      H  LV  + G     V  K    
Sbjct: 131 GSDLI--RGVRPEQQLVKTNLCAFSTGQITYSVVQIVHDELVKLMGGEVSDLVFAK---- 184

Query: 135 MSDAGLKVMLAAG--DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
              +G  V+L AG  D +R AAIDQL I  ++           +  A +   A ++A+ K
Sbjct: 185 ---SGPTVILLAGLQDVYRPAAIDQLTILGEQVGVPVYSEGTEAKPAQITKNAVEEAKRK 241

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +D +++DTAGRL  +  +M  + ++ + +       P  VL V+DA TGQ A   V  F
Sbjct: 242 NIDAIVMDTAGRLQIDKSMMVELKEVKKAVN------PTEVLLVVDAMTGQEAAALVTTF 295

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +   G TG I+TK+DG +RGG  + +      P+ F+G GE + DLE F     +  + G
Sbjct: 296 NIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERMEDLELFYPDRMAQRVLG 355

Query: 313 CLD 315
             D
Sbjct: 356 MGD 358


>gi|330844238|ref|XP_003294039.1| hypothetical protein DICPUDRAFT_51281 [Dictyostelium purpureum]
 gi|325075556|gb|EGC29428.1| hypothetical protein DICPUDRAFT_51281 [Dictyostelium purpureum]
          Length = 572

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 131/273 (47%), Gaps = 35/273 (12%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDF 107
           L + ++   +A K+VE + T    K +S  +     V   + E I ++L P     N D 
Sbjct: 296 LTKKNVAADIADKLVESIGTGLEGKKLSTFQGVSGVVKQQMEETITRILTPKR---NIDI 352

Query: 108 --------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
                     RP+ I+  GVNGVGK+T + K+   ++  G + MLAA DTFRS AI+QLK
Sbjct: 353 LREVQAVKGKRPYTIVFSGVNGVGKSTNLAKICYWLTANGYRCMLAACDTFRSGAIEQLK 412

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             ADR            DAA +A +A  +A+   +DV++IDT GR+ NN  LM  + K++
Sbjct: 413 THADRLGVPLYERGYSKDAANVAADAIAEAKDMGIDVVLIDTTGRMQNNEPLMKALSKLV 472

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH------------AVAGTTGLIMTKMD 267
                 + +    VL V +A  G + + Q+  F              +    G+I+TK D
Sbjct: 473 ------NQNNADLVLFVGEALVGNDGVDQLTKFDKSLSLLSSTTSSKIRTIDGIILTKFD 526

Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
               + G  I +V +   P+ FLG G+   DL+
Sbjct: 527 TIDDKVGAAISMVYSTGHPILFLGTGQNYTDLK 559


>gi|120437132|ref|YP_862818.1| signal recognition particle protein [Gramella forsetii KT0803]
 gi|117579282|emb|CAL67751.1| signal recognition particle protein [Gramella forsetii KT0803]
          Length = 442

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADR 164
           + S  P VIL+ G+ G GKTT  GKL+  + +   K  +L A D +R AAI+QL +  ++
Sbjct: 94  NLSGDPSVILMSGLQGSGKTTFSGKLANFLKNKKTKKPLLVACDVYRPAAINQLHVVGEQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +    E   D  A++ +A   A+    +V+IIDTAGRL  +  +M  I  +   ++ 
Sbjct: 154 VGVEVYSDEGNQDPVAISKDAIAYAKENGHNVVIIDTAGRLAVDEAMMTEISNIHEAIQ- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+D+ TGQ+A+   + F+      G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKTFNERLNFDGVILTKLDGDTRGGAAISIKSVVNK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE ++ ++ F     +  I G  D
Sbjct: 268 PIKFIGTGEKMDAIDIFYPSRMADRILGMGD 298


>gi|145642024|ref|ZP_01797596.1| Signal recognition particle protein [Haemophilus influenzae R3021]
 gi|145273295|gb|EDK13169.1| Signal recognition particle protein [Haemophilus influenzae
           22.4-21]
          Length = 329

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 6/172 (3%)

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           + + D +R AAI QL+  A     DF  S++  +   +A  A   A+ K  DVLI+DTAG
Sbjct: 1   MVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAKLKFYDVLIVDTAG 60

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RLH ++ +M  I ++   L       P   L  +DA TGQ+A    + F+     TG+I+
Sbjct: 61  RLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAKAFNEALPLTGVIL 114

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I G  D
Sbjct: 115 TKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGD 166


>gi|88604251|ref|YP_504429.1| signal recognition particle protein Srp54 [Methanospirillum
           hungatei JF-1]
 gi|88189713|gb|ABD42710.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanospirillum hungatei JF-1]
          Length = 437

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 146/307 (47%), Gaps = 36/307 (11%)

Query: 28  LKEGITDIISSRRLDDGVREEL-EDL---LIRSDIGV----AVAQKIVEELLTKRYAKDV 79
           LK+ +  +     +D    EEL +DL   L+++D+ V     ++Q I +  L ++  K V
Sbjct: 9   LKDALRKLAGKTVIDRAAVEELVKDLQRALLQADVNVKQVMQLSQTIKKRALDEQPPKGV 68

Query: 80  S----VQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           +    V R++Y+  V+ +  K+ + L K           +IL+ G+ G GKTT   KL++
Sbjct: 69  TAREHVLRIVYEELVALVGQKVEVTLGK----------QIILMAGLQGSGKTTTTAKLAR 118

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G++V +   DTFR  A  Q+K   D+            DA  +  E   Q    K
Sbjct: 119 FFKRKGMRVAVICADTFRPGAYTQIKTLCDKVHVPCYGDPSEHDARKIVREGLAQL---K 175

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            +V+I+DT GR      L+  I  +  + K     A H  L VLDA  GQ A  Q   FH
Sbjct: 176 EEVIIVDTQGRHALEDDLITEIIDLNEITK-----ATHRWL-VLDAALGQQAREQARRFH 229

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                 G+I+TKMDGTA+GGG +  V      + F+G GE I DLE F   D ++ I+  
Sbjct: 230 EAVSIDGVIITKMDGTAKGGGAMSAVAETGSGIVFIGQGETIEDLEWF---DPNSYISRL 286

Query: 314 LDYGEEK 320
           L  G+ K
Sbjct: 287 LGMGDLK 293


>gi|169335863|ref|ZP_02863056.1| hypothetical protein ANASTE_02295 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258601|gb|EDS72567.1| hypothetical protein ANASTE_02295 [Anaerofustis stercorihominis DSM
           17244]
          Length = 440

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 143/286 (50%), Gaps = 15/286 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           ++ + +D  +RE +   L+ +D+   V +     L  K   ++V       Q+V+  V+ 
Sbjct: 22  LTEKDIDAALRE-IRMSLLEADVNYKVVKTFANNLKEKCMGEEVLKSLTPGQQVIKIVNN 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGDT 149
            +  +L   S+  N    + P +I+VVGV G GKTT IGK+     +   K ++  A D 
Sbjct: 81  ELVALLGGESRDINL-ADNGPTIIMVVGVQGSGKTTSIGKMGNFFKNKKNKKVVFVACDI 139

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            R+AA+DQLK+  +    + V +    DA  +A +  +  +    D++I+DTAGR H +S
Sbjct: 140 HRAAAVDQLKVLGEGLDIE-VFTLDKKDAGKIAKKGVEYGKKIGADIIIVDTAGRQHVDS 198

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +M    + ++V K ++P+     L V+D+  GQ A+   + F      TG I++K+D  
Sbjct: 199 EMME---EAVKVKKAINPN---ETLFVIDSLMGQQAVDAAKAFDESLEITGFILSKLDSD 252

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ARGG  + +    K P+ F   GE + D EPF     ++ I G  D
Sbjct: 253 ARGGAALSVTYITKKPIKFSAFGEKMEDFEPFHPDRVASRILGMGD 298


>gi|313203704|ref|YP_004042361.1| signal recognition particle subunit ffh/srp54 (srp54) [Paludibacter
           propionicigenes WB4]
 gi|312443020|gb|ADQ79376.1| signal recognition particle subunit FFH/SRP54 (srp54) [Paludibacter
           propionicigenes WB4]
          Length = 439

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 140/279 (50%), Gaps = 13/279 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   +A+   + +  K   ++V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRKALLDADVNFKIAKTFTDTVKEKAIGQNVLTSLKPNQLMVKIVHDELAQL 85

Query: 100 SKPFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAID 156
               + D + +  P VIL+ G+ G GKTT  GKL+  +     K  +L A D +R AAI+
Sbjct: 86  MGGASVDINLKGSPTVILMSGLQGSGKTTFSGKLANLLKTKRSKNPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK+  ++            +  ++A  A K A+    DV+I+DTAGRL  +  +M  I 
Sbjct: 146 QLKVLGEQLGVPVYSDLESKNPVSIAEAAIKHAKLHGNDVVIVDTAGRLAVDEAMMNEIA 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            + + +       P  +L V+D+ TGQ+A+   + F+      G+I+TK+DG  RGG  +
Sbjct: 206 AIKKAIN------PQEILFVVDSMTGQDAVNTAKEFNDRLDFDGVILTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I      P+ F+G GE ++ L+ F  +  +  I G  D
Sbjct: 260 SIRSVVNKPIKFVGTGEKMDALDVFYPERMADRILGMGD 298


>gi|313619619|gb|EFR91265.1| signal recognition particle protein [Listeria innocua FSL S4-378]
          Length = 363

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 109/208 (52%), Gaps = 11/208 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    +   D 
Sbjct: 14  PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL--DM 71

Query: 170 VCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +G   +   +A +A  +A+ + +D +IIDTAGRLH +  LM  + ++  +      
Sbjct: 72  PVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ 125

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I      P+ 
Sbjct: 126 ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIK 185

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE +  +E F     ++ I G  D
Sbjct: 186 FVATGEKMEAIETFHPDRMASRILGMGD 213


>gi|67624007|ref|XP_668286.1| signal recognition particle receptor alpha subunit [Cryptosporidium
           hominis TU502]
 gi|54659474|gb|EAL38049.1| signal recognition particle receptor alpha subunit [Cryptosporidium
           hominis]
          Length = 548

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 110/196 (56%), Gaps = 14/196 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           + I+ +GVNGVGK+T + K+   + + G L V++ A DTFR+ AI+QLK  A+       
Sbjct: 346 YSIVFLGVNGVGKSTNLAKVCYLLKNKGNLNVLIVACDTFRAGAIEQLKTHANCLGVQLY 405

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G DAA +A +A   A+ K  DV++IDTAGR+ +N  LM  + K+++V      + P
Sbjct: 406 EKGYGKDAAMVAKDAISYAKDKGFDVVLIDTAGRMQDNVPLMKSLAKLVQV------NNP 459

Query: 231 HSVLQVLDATTGQNALRQVEMFHAV------AGTTGLIMTKMDGT-ARGGGLIPIVVTHK 283
           + VL V +A  G +A+ Q+++F+            G+I+TK D    + G  + +V T  
Sbjct: 460 NLVLFVGEALVGNDAVHQLQVFNKYLVEFGDRPIDGIILTKFDTVDDKVGAALSMVYTTG 519

Query: 284 IPVYFLGVGEGINDLE 299
            PV F+G G+   +L+
Sbjct: 520 QPVVFVGTGQKYFNLK 535


>gi|331001995|ref|ZP_08325515.1| signal recognition particle protein [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330411791|gb|EGG91196.1| signal recognition particle protein [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 451

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 153/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++    RL +D VR  L+++   L+ +D+   V +  ++ +  K   
Sbjct: 3   FESLSEKLQNVFKNLRGKGRLTEDDVRAGLKEVRLALLEADVSFKVVKDFIKSIQEKAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+V+  V+E +  ++   +       S    VI++ G+ G GKTT   KL
Sbjct: 63  SDVLNSLTPAQQVIKIVNEEMVSLMGSETTELKIKPSGDITVIMMAGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--DAAALAYEAFKQA 189
           + K+   G   +L   D +R AAI+QLK   ++   D    E+G+    A +A  A + A
Sbjct: 123 AGKLKKKGNSPLLVGCDIYRPAAIEQLKRNGEKV--DVPVFEMGTAHKPAEIAKRALEFA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    +++ +DTAGRLH +  +M        +L+  D      ++ V+DA TGQ+A+   
Sbjct: 181 KENHHNIVFLDTAGRLHIDEDMMN------ELLEIKDNVNVDDIILVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+I+TK+DG  RGG  + +      P+ ++G+GE ++DLE F     ++ 
Sbjct: 235 ETFNEKLDITGVILTKLDGDTRGGAALSVRAVTGKPILYVGMGEKLSDLEQFYPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|86132319|ref|ZP_01050914.1| signal recognition 54 kDa protein [Dokdonia donghaensis MED134]
 gi|85817238|gb|EAQ38421.1| signal recognition 54 kDa protein [Dokdonia donghaensis MED134]
          Length = 442

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 106/211 (50%), Gaps = 7/211 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWADR 164
           + S  P +IL+ G+ G GKTT  GKL+  +     K  +L A D +R AAIDQL +  D+
Sbjct: 94  NLSATPSIILMSGLQGSGKTTFSGKLANFLKTKKTKKPLLVACDVYRPAAIDQLHVVGDQ 153

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              D        +   +A +    A+A   +V+IIDTAGRL  +  +M  I  +   ++ 
Sbjct: 154 IKVDVYSDRDEKNPVKIAQDGIAFAKANGHNVVIIDTAGRLAVDEAMMKEIADVHTAIQ- 212

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+D+ TGQ+A+   + F+ +    G+I+TK+DG  RGG  I I      
Sbjct: 213 -----PQETLFVVDSMTGQDAVNTAKAFNDILNFDGVILTKLDGDTRGGAAISIKSVVDK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE +  ++ F     +  I G  D
Sbjct: 268 PIKFIGTGEKMEAIDVFYPSRMADRILGMGD 298


>gi|241956007|ref|XP_002420724.1| signal recognition particle (SRP) receptor subunit alpha, putative
           [Candida dubliniensis CD36]
 gi|223644066|emb|CAX41809.1| signal recognition particle (SRP) receptor subunit alpha, putative
           [Candida dubliniensis CD36]
          Length = 535

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 142/289 (49%), Gaps = 33/289 (11%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP-LS 100
           D V ++  + LI  +I    A  I++++ TK    K V++      +++ + K+L P +S
Sbjct: 245 DEVSKKFREQLISKNITPGTATTIIDKIKTKLSTNKKVTMAVYKQALTDELTKILTPNVS 304

Query: 101 KPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
                    N + + RP+VI VVGVNGVGK+T + KL+       L V++ A DTFRS A
Sbjct: 305 TDLLHDIKRNAELNTRPYVISVVGVNGVGKSTNLAKLAFWFLQNNLNVLICACDTFRSGA 364

Query: 155 IDQLKIWAD------------RTSADFVCSEIGS--DAAALAYEAFKQAQAKKVDVLIID 200
           ++QLK+  +            ++  D      GS       A +A + A     D+++ID
Sbjct: 365 VEQLKVHVNNLNRLNEASTNTKSRIDIFEKGYGSGDHVVQTAKQAIQYAGENNFDIVLID 424

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGR H+N+ LMA + K        D  +P+ ++ V +A  G +++ Q   F+   G   
Sbjct: 425 TAGRTHSNAKLMAPLKKF------GDAASPNKIIMVGEALVGTDSVEQATNFNKAFGNKR 478

Query: 261 ----LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                I++K+D      G +I +V+   +P+ F+G G+   D++    K
Sbjct: 479 TLDFFIISKVDTVGDLVGTMINMVMATNVPILFVGTGQTYTDIKRLSVK 527


>gi|326524808|dbj|BAK04340.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 606

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 149/314 (47%), Gaps = 37/314 (11%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W   + +  A ++ +L+E  +D+  + +        L+D L+  ++   +A+K+ E +  
Sbjct: 300 WFSSMFRSIAGSNAELEE--SDLQPALK-------SLKDRLMTKNVAEEIAEKLCESVAA 350

Query: 73  KRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----------PHVILVVGVNG 121
               K + S  R+   V   + + L+ +  P       R          P+VI+ VGVNG
Sbjct: 351 SLLGKKLGSFTRISSSVQTAMEEALVRILTPRRSIDVLRDVHAAKDRGTPYVIVFVGVNG 410

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGK+T + K++  +    L V LAA DTFRS A++QL+  A R            D A +
Sbjct: 411 VGKSTNLAKVAYWLLQHDLSVTLAACDTFRSGAVEQLRTHARRLQIPIFEKGYERDPAVV 470

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A  A ++A   K DV+++DTAGR+ +N  LM  + K+I +      + P  VL V +A  
Sbjct: 471 AKGAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINL------NNPDLVLFVGEALV 524

Query: 242 GQNALRQVEMFH------AVAGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLG 290
           G +A+ Q+  F       + A T     G+++TK D    + G  + +V     PV F+G
Sbjct: 525 GNDAVDQLTKFSQKLADLSTAPTARSIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVG 584

Query: 291 VGEGINDLEPFVAK 304
            G+   DL+    K
Sbjct: 585 CGQSYTDLKKLNVK 598


>gi|228473709|ref|ZP_04058457.1| signal recognition particle protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274856|gb|EEK13673.1| signal recognition particle protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 444

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 134/273 (49%), Gaps = 10/273 (3%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL--SKPF 103
           +E+   L+ +D+  A+A++   ++  K    +V +  +    + +++H  L  L      
Sbjct: 32  KEVRRALLDADVNYAIAKEFTAKVKAKALGSNVLTTLQPGQLMVKIVHDELTELMGGDAT 91

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAIDQLKIWA 162
             + S  P VIL+ G+ G GKTT  GKL+  + +   K  +L A D +R AAIDQL I  
Sbjct: 92  GVNLSGNPSVILMSGLQGSGKTTFSGKLANFLKNKKNKKPLLVACDVYRPAAIDQLHIVG 151

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +   +    +   +   +A +    A++   +V+IIDTAGRL  +  +M  I  +   +
Sbjct: 152 QQIGVEVFSEKENRNPVDIAQKGLAYAKSNGYNVVIIDTAGRLAVDEQMMKEIADIHHAV 211

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                  P   L V+DA TGQ+A+   + F+ V    G+++TK+DG  RGG  I I    
Sbjct: 212 ------TPQETLFVVDAMTGQDAVNTAKAFNDVLNFDGVVLTKLDGDTRGGAAISIKSVV 265

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+G GE ++ ++ F     +  I G  D
Sbjct: 266 NKPIKFVGTGEKMDAIDIFYPSRMADRILGMGD 298


>gi|66361764|ref|XP_627404.1| Srp101p GTpase.  signal recognition particle receptor alpha subunit
           [Cryptosporidium parvum Iowa II]
 gi|46228777|gb|EAK89647.1| Srp101p GTpase, signal recognition particle receptor alpha subunit
           [Cryptosporidium parvum Iowa II]
          Length = 548

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 110/196 (56%), Gaps = 14/196 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           + I+ +GVNGVGK+T + K+   + + G L V++ A DTFR+ AI+QLK  A+       
Sbjct: 346 YSIVFLGVNGVGKSTNLAKVCYLLKNKGNLNVLIVACDTFRAGAIEQLKTHANCLGVQLY 405

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G DAA +A +A   A+ K  DV++IDTAGR+ +N  LM  + K+++V      + P
Sbjct: 406 EKGYGKDAAMVAKDAISYAKDKGFDVVLIDTAGRMQDNVPLMKSLAKLVQV------NNP 459

Query: 231 HSVLQVLDATTGQNALRQVEMFHAV------AGTTGLIMTKMDGT-ARGGGLIPIVVTHK 283
           + VL V +A  G +A+ Q+++F+            G+I+TK D    + G  + +V T  
Sbjct: 460 NLVLFVGEALVGNDAVHQLQVFNKYLVEFGDRPIDGIILTKFDTVDDKVGAALSMVYTTG 519

Query: 284 IPVYFLGVGEGINDLE 299
            PV F+G G+   +L+
Sbjct: 520 QPVVFVGTGQKYFNLK 535


>gi|170290943|ref|YP_001737759.1| GTP-binding signal recognition particle [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175023|gb|ACB08076.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 290

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 107/195 (54%), Gaps = 12/195 (6%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P  ++  G NGVGK+  I KL+K + D G +V++ + DT+R+AA +QL+ +       
Sbjct: 94  RKPFKVVFFGFNGVGKSLSIVKLAKYLQDMGGRVLVVSADTYRAAAGEQLEGYCRAAGIS 153

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               + GSD +A+ ++A   A A+    L+IDTAGR + N  L+  + K+ RV++     
Sbjct: 154 IFKGQRGSDPSAVCFDAMSMASARGYSHLLIDTAGRNYLNKNLIEELRKIFRVVE----- 208

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT--HKIPV 286
            P   + VLD   G + L Q + F+ V G   +I+TK+D    GG ++P+  +     PV
Sbjct: 209 -PDLRVLVLDGVAGNDVLSQCDSFNEV-GYDAIIVTKVDA---GGPIVPLFASIHSGKPV 263

Query: 287 YFLGVGEGINDLEPF 301
            F+G G+  +D+  F
Sbjct: 264 LFVGTGQSFSDIATF 278


>gi|58221321|gb|AAW68303.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221323|gb|AAW68304.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221329|gb|AAW68307.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221331|gb|AAW68308.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221337|gb|AAW68311.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221341|gb|AAW68313.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|108937136|gb|ABG23380.1| putative signal recognition particle protein [Neisseria
           gonorrhoeae]
 gi|116582907|gb|ABK00076.1| regulatory protein [Neisseria gonorrhoeae]
 gi|116582909|gb|ABK00077.1| regulatory protein [Neisseria gonorrhoeae]
 gi|193735092|gb|ACF20055.1| regulatory protein [Neisseria gonorrhoeae]
 gi|193735100|gb|ACF20059.1| regulatory protein [Neisseria gonorrhoeae]
 gi|193735110|gb|ACF20064.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 140

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 78/118 (66%), Gaps = 1/118 (0%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + E ++ ++ PL KP     +  P VI++ G+NG GKTT IGKL+K     G  V+LAAG
Sbjct: 22  LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           DTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A+A+ +D+++ DTAGRL
Sbjct: 82  DTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138


>gi|308375922|ref|ZP_07445553.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu007]
 gi|308377166|ref|ZP_07441361.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu008]
 gi|308344837|gb|EFP33688.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu007]
 gi|308348785|gb|EFP37636.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu008]
          Length = 517

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 139/285 (48%), Gaps = 19/285 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 20  DATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILG 79

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P V+++ G+ G GKTT+ GKL+ ++   G   +L A D  R AA++Q
Sbjct: 80  GETRELAFAKTP-PTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQ 138

Query: 158 LKIWADRTSADFVCSEIGS-------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           L++  +R          G+       D  A+A     +A+AK  DV+I+DTAGRL  +  
Sbjct: 139 LQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRLGIDEE 198

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LMA     IR     D   P  VL VLDA  GQ+A+     F    G TG+ +TK+DG A
Sbjct: 199 LMA-QAAAIR-----DAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDA 252

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + +     +P+ F   GE + D + F     ++ I G  D
Sbjct: 253 RGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGD 297


>gi|313124886|ref|YP_004035150.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Halogeometricum borinquense DSM 11551]
 gi|312291251|gb|ADQ65711.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Halogeometricum borinquense DSM 11551]
          Length = 464

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 96/210 (45%), Gaps = 8/210 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           D    P  IL+ G+ G GKTT   K++   S  GL+  +   DTFR  A DQ K   +R 
Sbjct: 92  DIPLEPQTILLAGLQGSGKTTTAAKMAWWFSTKGLRAAVIQTDTFRPGAYDQAKQMCERA 151

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             +F       D   +A +  +  +    D+ I+DTAGR      L+  I  +   +   
Sbjct: 152 EVEFYGDPDEEDPVKIARDGLEATE--DADIHIVDTAGRHALEDALIDEIEDIDSAVN-- 207

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P   L VLDA  GQ A  Q   F    G  G+ +TK+DGTA+GGG +  V      
Sbjct: 208 ----PDRSLLVLDAAIGQGAKDQARQFDDSIGIDGVAITKLDGTAKGGGALTAVNETDSS 263

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + FLG GE + D+E F    F + + G  D
Sbjct: 264 IGFLGTGETVQDIERFEPNGFISRLLGMGD 293


>gi|303281744|ref|XP_003060164.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
 gi|226458819|gb|EEH56116.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
          Length = 628

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 108/204 (52%), Gaps = 18/204 (8%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S RP+VI  VGVNGVGK+T + K++  +    ++VM+AA DTFR+ A++QL+    R   
Sbjct: 417 SGRPYVITFVGVNGVGKSTNLSKVAYWLLQHDVRVMIAACDTFRAGAVEQLRTHCKRLGV 476

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    D A++A EA K A+    +V+++DTAGR+ +N  LM  + K+I V      
Sbjct: 477 PLFERGYEKDPASVASEAVKAARRTGAEVVLVDTAGRMQDNEPLMRALAKLINV------ 530

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGT-----------TGLIMTKMDG-TARGGGL 275
           + P  VL V +A  G +A+ Q+  F+                 G++++K D    + G  
Sbjct: 531 NEPDLVLFVGEALVGNDAVDQLSKFNERLSDLATDAKKRRVIDGVVLSKFDTIDDKVGAA 590

Query: 276 IPIVVTHKIPVYFLGVGEGINDLE 299
           + +V T   PV F+G G+   DL+
Sbjct: 591 LSMVYTSGAPVMFVGCGQTYTDLK 614


>gi|289675158|ref|ZP_06496048.1| Signal recognition particle protein [Pseudomonas syringae pv.
           syringae FF5]
          Length = 281

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/188 (36%), Positives = 101/188 (53%), Gaps = 7/188 (3%)

Query: 129 GKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  A K
Sbjct: 3   GKLARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIK 62

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+ K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A  
Sbjct: 63  EARLKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVK------PAETLFVVDAMTGQDAAN 116

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     +
Sbjct: 117 TAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIA 176

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 177 SRILGMGD 184


>gi|139436969|ref|ZP_01771129.1| Hypothetical protein COLAER_00102 [Collinsella aerofaciens ATCC
           25986]
 gi|133776616|gb|EBA40436.1| Hypothetical protein COLAER_00102 [Collinsella aerofaciens ATCC
           25986]
          Length = 461

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 132/269 (49%), Gaps = 15/269 (5%)

Query: 53  LIRSDIGVAVAQKIV----EELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V ++ V    E  +T    + +S  Q V+  V + + +ML   S      F
Sbjct: 8   LLEADVNFKVVKEFVAKTKERCMTAEVMESLSPAQNVVKIVLDELTEMLG--STESKLVF 65

Query: 108 SHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S+R P+VI++VG+ G GKTT   KL+  +   G   +L A D +R AA DQL        
Sbjct: 66  SNRIPNVIMLVGLQGSGKTTAAVKLAYLLKKQGRSPLLVACDVYRPAAADQLATLGGEIG 125

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 + G+    +A  A ++A     DV+I+DTAGRL  +  +M     + + +K   
Sbjct: 126 VPVFRGD-GAHPVDIAKGAIQEAVDHLRDVVIVDTAGRLQIDEQMMQEAVYIKKAVK--- 181

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  VL V+DA TGQ+ +  V  F       G+I++K+DG ARGGG + +      P+
Sbjct: 182 ---PDQVLMVVDAMTGQDIVNVVSTFAERTDFDGVIISKLDGDARGGGALSVRQVTGKPI 238

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+ +GE  + LEPF     +  I G  D
Sbjct: 239 KFVSMGEKPDSLEPFYPDRMAKRILGMGD 267


>gi|304373199|ref|YP_003856408.1| Signal recognition particle protein [Mycoplasma hyorhinis HUB-1]
 gi|304309390|gb|ADM21870.1| Signal recognition particle protein [Mycoplasma hyorhinis HUB-1]
          Length = 445

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 153/309 (49%), Gaps = 25/309 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L+K F  +  K+    T  +    L++ +RE ++  L+ +D+ + + +  ++E+  K  A
Sbjct: 5   LSKRFQKSFAKMNAKTT--LKEEDLNEVIRE-IKLALLEADVNLLIVKDFIKEIKEKALA 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +++      Q+ +  V+E + ++L    KP    ++     I++VG+ G GKTT + KL
Sbjct: 62  TEITSTLNPQQQFIKIVNENLVQVLG--EKPKQIKYNRPIEKIVLVGLQGSGKTTTVAKL 119

Query: 132 S-----KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           +     KK      K +L A D +R AAI+QL I   +     V S+  S    +     
Sbjct: 120 AHFSLRKKHIQ---KPLLIAADIYRPAAIEQL-IQLGKQINIPVFSQKDSTPQEIVSAGL 175

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A +   D++IIDTAGRL  +  LM  +  + ++ K      PH +  V DA +GQ+ +
Sbjct: 176 DYASSNDFDLVIIDTAGRLSIDEKLMQELKDIEKIAK------PHEIFFVADALSGQDII 229

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     +G I+TK+D  ARGG  + ++   KIP+ F+G GE I + + F     
Sbjct: 230 NVAKTFNENITLSGSIITKLDSDARGGAALSLIKLLKIPIVFIGTGEKITNFDLFYPDRM 289

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 290 ASRILGMGD 298


>gi|299821777|ref|ZP_07053665.1| signal recognition particle protein [Listeria grayi DSM 20601]
 gi|299817442|gb|EFI84678.1| signal recognition particle protein [Listeria grayi DSM 20601]
          Length = 453

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V+++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    + S   
Sbjct: 101 PTVLMMVGLQGAGKTTTTGKLANLLRKKYNRKPLLVAADIYRPAAIQQLETLGKQLSMPV 160

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                      +A +A  +A+   +D +IIDTAGRLH +  LM  + ++  V       +
Sbjct: 161 FSLGDQVSPVEIAKQAIAKAKEDHLDYVIIDTAGRLHIDDALMDELKQVKEV------AS 214

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +  V+D+ TGQ+A+   E F+     +G+I+TK+DG  RGG  + I      P+  +
Sbjct: 215 PDEIFLVVDSMTGQDAVNVAESFNEQLEVSGVILTKLDGDTRGGAALSIRAVTGKPIKLV 274

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
             GE +  LE F     ++ I G  D
Sbjct: 275 ATGEKMEALETFHPDRMASRILGMGD 300


>gi|331698510|ref|YP_004334749.1| signal recognition particle protein [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953199|gb|AEA26896.1| signal recognition particle protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 509

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 134/281 (47%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIARIKERAKGAEVSQALNPAQQVVKIVNEELIAVLG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++         P VI++ G+ G GKTT+ GKL++ +   G   +L A D  R  A++Q
Sbjct: 88  GETRRIAL-AKEPPSVIMLAGLQGSGKTTLAGKLARWLKGQGHTPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L+I  +R        E G+   D   +A      A+ K  D++I+DTAGRL  ++ LM  
Sbjct: 147 LQIVGERAGVTTFAPEPGNGVGDPVDVARRGVAHARDKMYDIVIVDTAGRLGVDAELMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +   ++      P   L V+DA  GQ+A+   E F    G +G+++TK+DG ARGG 
Sbjct: 207 ASDIRDAVR------PDETLFVVDAMIGQDAVATAEAFRDGVGFSGVVLTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+ F   GE + D + F     ++ I G  D
Sbjct: 261 ALSVREVTGQPILFASNGEKLEDFDVFHPDRMASRILGMGD 301


>gi|125983470|ref|XP_001355500.1| GA15385 [Drosophila pseudoobscura pseudoobscura]
 gi|54643816|gb|EAL32559.1| GA15385 [Drosophila pseudoobscura pseudoobscura]
          Length = 621

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 138/288 (47%), Gaps = 41/288 (14%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102
           E++ D LI  ++   +A K+ + + T    K V +   V   V E + + L+ +  P   
Sbjct: 327 EKMRDHLISKNVASEIAVKLCDSVATSLEGKQVGTFDSVASLVKEALTQSLVRILSPKRR 386

Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                       + +P+ I+  GVNGVGK+T + K+   + +    V++AA DTFR+ A+
Sbjct: 387 IDIIRDALECKRNGKPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 446

Query: 156 DQLKIWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QL+                +RT         G DAA +A EA K A   KVDV+++DTA
Sbjct: 447 EQLRTHTRHLNALHPPANHNNRTMVQLYEKGYGKDAAGIAMEAIKFAHETKVDVVLVDTA 506

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259
           GR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ ++A  +  
Sbjct: 507 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 560

Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
                  G+++TK D    + G  I +      P+ F+G G+   DL+
Sbjct: 561 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK 608


>gi|58221325|gb|AAW68305.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221333|gb|AAW68309.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221339|gb|AAW68312.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221343|gb|AAW68314.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221345|gb|AAW68315.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221347|gb|AAW68316.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221349|gb|AAW68317.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221351|gb|AAW68318.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221353|gb|AAW68319.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221355|gb|AAW68320.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|193735104|gb|ACF20061.1| regulatory protein [Neisseria gonorrhoeae]
 gi|193735108|gb|ACF20063.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 140

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 78/118 (66%), Gaps = 1/118 (0%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + E ++ ++ PL KP     +  P VI++ G+NG GKTT IGKL+K     G  V+LAAG
Sbjct: 22  LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           DTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A+A+ +D+++ DTAGRL
Sbjct: 82  DTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138


>gi|15791232|ref|NP_281056.1| signal recognition particle [Halobacterium sp. NRC-1]
 gi|169236988|ref|YP_001690188.1| signal recognition particle 54K protein [Halobacterium salinarum
           R1]
 gi|12230636|sp|Q9HMN5|SRP54_HALSA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|229558602|sp|B0R7X3|SRP54_HALS3 RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|10581860|gb|AAG20536.1| signal recognition particle [Halobacterium sp. NRC-1]
 gi|167728054|emb|CAP14842.1| signal recognition particle 54K protein [Halobacterium salinarum
           R1]
          Length = 460

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 131/281 (46%), Gaps = 24/281 (8%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--------VQRVLYDVSELIHK 94
           D V +E++  L+++D+ V +   + E +  +   ++          V R++Y+  EL+  
Sbjct: 29  DKVVKEIQRSLLQADVDVDLVMDLSESITERSLEEEPPGGTSARDHVLRIVYE--ELVG- 85

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            L+  S P   +       I++ G+ G GKTT   K++   S  GL+  +   DTFR  A
Sbjct: 86  -LVGDSTPIPLE----EQTIMLAGLQGSGKTTTAAKMAWWFSKKGLRPAIVQTDTFRPGA 140

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +Q    ADR   DF       D   +A +    A     DV I+DTAGR      L+A 
Sbjct: 141 YEQAAEMADRAEVDFYGEPDSDDPVQIARDGL--AATADADVHIVDTAGRHALEDDLIAE 198

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           I ++  V        P   L VLDA  GQ A +Q   F A  G  G+ +TK+DGTA+GGG
Sbjct: 199 IEEIEGV------VEPDRSLLVLDAAIGQGAKQQARQFDASIGIDGVAITKLDGTAKGGG 252

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +  V      + FLG GE + D+E F    F + + G  D
Sbjct: 253 SLTAVNETDSTIAFLGSGETVQDIERFEPDSFISRLLGMGD 293


>gi|325269145|ref|ZP_08135765.1| signal recognition particle protein [Prevotella multiformis DSM
           16608]
 gi|324988532|gb|EGC20495.1| signal recognition particle protein [Prevotella multiformis DSM
           16608]
          Length = 453

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 138/266 (51%), Gaps = 17/266 (6%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL- 99
           V E L+D+   L+ +D+   VA+   + +  K    +V +  +    + +++H  L  L 
Sbjct: 27  VAETLKDVRRALLDADVNYKVAKSFTDTVKQKALGMNVLTAVKPGQLMVKIVHDELAELM 86

Query: 100 -SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQ 157
             +    + S RP VIL+ G+ G GKTT  GKL+  +     K  +L A D +R AA++Q
Sbjct: 87  GGEAVGLNLSGRPAVILMSGLQGSGKTTFSGKLANMLKTKEHKNPLLVACDVYRPAAVEQ 146

Query: 158 LKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           LK+   +  A  V SE G+ +   +A  A  +A+A+  DV+IIDTAGRL  +  +M  I 
Sbjct: 147 LKVVGGQVGAP-VYSEPGNKNVNEIADHAIAEAKARGNDVVIIDTAGRLAVDEEMMDEI- 204

Query: 217 KMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
                 + L  H  P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  
Sbjct: 205 ------ESLKNHVNPDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAA 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPF 301
           + I      P+ F+G GE +  ++ F
Sbjct: 259 LSIRTVVTKPIKFIGTGEKMEAVDVF 284


>gi|238916984|ref|YP_002930501.1| signal recognition particle, subunit SRP54 [Eubacterium eligens
           ATCC 27750]
 gi|238872344|gb|ACR72054.1| signal recognition particle, subunit SRP54 [Eubacterium eligens
           ATCC 27750]
          Length = 448

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 147/307 (47%), Gaps = 21/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++    RL +  V+  L+++   L+ +D+   V ++ ++ +  +   
Sbjct: 3   FDSLSEKLQNIFKNLRGKGRLSEADVKAALKEVKLALLEADVNFKVVKQFIKSVEERAIG 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E +  ++   +            VI++ G+ G GKTT   KL
Sbjct: 63  QDVMSSLTPGQMVIKIVNEEMVSLMGSETTEIALKPGSEITVIMMAGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G K +L A D +R AAI+QL I  ++   +            +A  A   A+ 
Sbjct: 123 AGKFKAKGRKPLLVACDVYRPAAIEQLTINGNKQGVEVFSMGTNQKPVDIAKAAIAHAKN 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ---VLDATTGQNALRQ 248
              + +I+DTAGRLH +  +M  +         +D  A  SV Q   V+D+ TGQ+A+  
Sbjct: 183 NDFNTVILDTAGRLHVDEDMMNEL---------IDIKANVSVDQTILVVDSMTGQDAVNV 233

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++
Sbjct: 234 ASSFNEKVGIDGVILTKLDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFYPDRMAS 293

Query: 309 VITGCLD 315
            I G  D
Sbjct: 294 RILGMGD 300


>gi|330444666|ref|YP_004377652.1| signal recognition particle protein [Chlamydophila pecorum E58]
 gi|328807776|gb|AEB41949.1| signal recognition particle protein [Chlamydophila pecorum E58]
          Length = 449

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 147/312 (47%), Gaps = 24/312 (7%)

Query: 12  SWIRKLTKGFAS--TSLKLKEGITDIISSRRLDDGVREELED----LLIRSDIGVAVAQK 65
           S  RKL+  F+S  TS ++ E   +I SS R    VR  L D      +  D    V QK
Sbjct: 4   SLARKLSSIFSSLATSQRITE--ENIASSIR---EVRLALLDADVYYPVVKDFIAKVKQK 58

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++ E + K  +      R L++  EL    L+  S          P V+L+ G+ G GKT
Sbjct: 59  VIGEKVWKHVSPGQQFIRCLHE--ELT--TLLGNSDKEELIIQGNPSVVLLCGLQGAGKT 114

Query: 126 TVIGKLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           T   KL+  + + G   KV++   D  R AA+DQLK    +T AD   SE G +   +  
Sbjct: 115 TTCAKLASYVIEEGKAKKVLVVPCDRKRFAAVDQLKTLIAQTQADLYQSE-GGNPVEITR 173

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA + A+A   D ++IDTAGRLH +  LM+ +  + +V            L V++   GQ
Sbjct: 174 EALEYAKAYNYDFVLIDTAGRLHLDDELMSELASIQKV------SQAKERLFVMNLAMGQ 227

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A+   + F  +   TG+I++  DG AR G ++ +      P+ F G GE I DL  F  
Sbjct: 228 DAVATAQAFDDLLDLTGVIISMTDGDARAGAILSMKSVLGKPIKFEGCGERIRDLRLFNP 287

Query: 304 KDFSAVITGCLD 315
              +  I G  D
Sbjct: 288 ASMADRILGMGD 299


>gi|315930434|gb|EFV09500.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 305]
          Length = 152

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 87/148 (58%), Gaps = 3/148 (2%)

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           D V +  G D +A+ ++   +A+AK  D +IIDTAGRL N   L   + K++R+  +   
Sbjct: 4   DIVLTAQGHDPSAVTFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALE 63

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            APH  + VLD T G   + Q + F+ +    G+I+TK+DGTA+GG L  I    ++P++
Sbjct: 64  GAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIF 123

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++GVGE + DL+ F A   SA +   LD
Sbjct: 124 YVGVGEQMTDLQEFNA---SAYLDTLLD 148


>gi|58221319|gb|AAW68302.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 140

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 77/118 (65%), Gaps = 1/118 (0%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + E ++ ++ PL KP     +  P VI++ G+NG GKTT IGKL+K     G  V+LAAG
Sbjct: 22  LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           DTFR+AA +QL+ W  R +   +    G D+AA+ ++A + A+A+ +D+++ DTAGRL
Sbjct: 82  DTFRAAAREQLQAWGGRNNVTVISQATG-DSAAVCFDAVQAAKARGIDIVLADTAGRL 138


>gi|242033617|ref|XP_002464203.1| hypothetical protein SORBIDRAFT_01g014055 [Sorghum bicolor]
 gi|241918057|gb|EER91201.1| hypothetical protein SORBIDRAFT_01g014055 [Sorghum bicolor]
          Length = 471

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 140/283 (49%), Gaps = 21/283 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYD--V 88
           ++  + LDD +  E+   L+++D+     +++   + +    +  A   + +RV++   V
Sbjct: 17  LVDQKVLDDCL-NEISRALLQADVRFETVRRVQASIKSTVNLQALADGTNKRRVIHRAVV 75

Query: 89  SELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAA 146
           +EL  + L P    F      +P  V++ VG+ G GKTT   K +       GL   L  
Sbjct: 76  AEL-RRTLDPGKPSFAPTKGRKPASVVMFVGLQGSGKTTTCVKYADYHRRHKGLSPALVC 134

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA---FKQAQAKKVDVLIIDTAG 203
            DTFR+ A DQLK  A +    F  S   SD   +A E    F+   A   D++++DT+G
Sbjct: 135 ADTFRAGAFDQLKQNATKAGIPFYGSHTESDPVKVAVEGVDRFRNEDA--CDLIVVDTSG 192

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R    + L+  + ++       D   P  V+ V+DA+ GQ A +Q + F   A    +I+
Sbjct: 193 RHRQEAALLEEMRQVA------DATRPDLVVFVMDASIGQAAFQQAQAFRQSAPVGAVIV 246

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TKMDG A+GGG +  V   K PV F+G GE I DLE F AK F
Sbjct: 247 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHIPDLEAFDAKSF 289


>gi|148261145|ref|YP_001235272.1| signal recognition particle protein [Acidiphilium cryptum JF-5]
 gi|146402826|gb|ABQ31353.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidiphilium
           cryptum JF-5]
          Length = 457

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 113/215 (52%), Gaps = 8/215 (3%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKI 160
           P N + +  P   L+VG+ G GKTT  GK++  + +   K V+LA+ DT R AA  QL  
Sbjct: 93  PLNLNAAS-PIPFLMVGLQGSGKTTTSGKIALLLKEKQRKKVLLASLDTQRPAAQLQLAQ 151

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A+R     +    G     +A  A +  + +  DV+I+DTAGRL  +  LM  + K IR
Sbjct: 152 LAERAGVASLPIVPGETPVQIARRAMETGRREVFDVVILDTAGRLAIDQALMDEV-KAIR 210

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
                D  AP   L V+DA TGQ+AL     F+     TG++MT++DG ARGG  + +  
Sbjct: 211 -----DVTAPAETLLVVDAMTGQDALATATAFNEAVSITGIVMTRLDGDARGGAALSMRA 265

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+  +G+GE ++ LEPF  +  +  I G  D
Sbjct: 266 VTGAPIKLMGMGEKLDALEPFHPERIAGRILGMGD 300


>gi|326404546|ref|YP_004284628.1| signal recognition particle protein [Acidiphilium multivorum
           AIU301]
 gi|325051408|dbj|BAJ81746.1| signal recognition particle protein [Acidiphilium multivorum
           AIU301]
          Length = 462

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 113/215 (52%), Gaps = 8/215 (3%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKI 160
           P N + +  P   L+VG+ G GKTT  GK++  + +   K V+LA+ DT R AA  QL  
Sbjct: 98  PLNLNAAS-PIPFLMVGLQGSGKTTTSGKIALLLKEKQRKKVLLASLDTQRPAAQLQLAQ 156

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A+R     +    G     +A  A +  + +  DV+I+DTAGRL  +  LM  + K IR
Sbjct: 157 LAERAGVASLPIVPGETPVQIARRAMETGRREVFDVVILDTAGRLAIDQALMDEV-KAIR 215

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
                D  AP   L V+DA TGQ+AL     F+     TG++MT++DG ARGG  + +  
Sbjct: 216 -----DVTAPAETLLVVDAMTGQDALATATAFNEAVSITGIVMTRLDGDARGGAALSMRA 270

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+  +G+GE ++ LEPF  +  +  I G  D
Sbjct: 271 VTGAPIKLMGMGEKLDALEPFHPERIAGRILGMGD 305


>gi|253797996|ref|YP_003030997.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           KZN 1435]
 gi|289553295|ref|ZP_06442505.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           KZN 605]
 gi|297635534|ref|ZP_06953314.1| signal recognition particle protein [Mycobacterium tuberculosis KZN
           4207]
 gi|297732533|ref|ZP_06961651.1| signal recognition particle protein [Mycobacterium tuberculosis KZN
           R506]
 gi|313659865|ref|ZP_07816745.1| signal recognition particle protein [Mycobacterium tuberculosis KZN
           V2475]
 gi|253319499|gb|ACT24102.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           KZN 1435]
 gi|289437927|gb|EFD20420.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           KZN 605]
 gi|328457770|gb|AEB03193.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           KZN 4207]
          Length = 525

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTAALQGLRGKGRLTDADIDATTCEIRLALLEADVSLPVVRAFIHRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P V+++ G+ G GKTT+ GKL
Sbjct: 62  AEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTP-PTVVMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184
           + ++   G   +L A D  R AA++QL++  +R          G+       D  A+A  
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA     IR     D   P  VL VLDA  GQ+
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+     F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|123420898|ref|XP_001305857.1| SRP54-type protein [Trichomonas vaginalis G3]
 gi|121887399|gb|EAX92927.1| SRP54-type protein, putative [Trichomonas vaginalis G3]
          Length = 490

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 139/302 (46%), Gaps = 24/302 (7%)

Query: 27  KLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIG----VAVAQKIVEELLTKRYAKD 78
           KL   I  +  S+++D+ V      E+   LI +D+      + ++++ E++        
Sbjct: 8   KLIGSIKKLSESKKIDETVYRNFMIEISKSLIAADVSKEIVFSFSKRLREKINFNEIPPG 67

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-----HVILVVGVNGVGKTTVIGKLSK 133
           +S +RV   + + +   L+ L  P     +++P     ++ ++VG+ G GKTT + KL+ 
Sbjct: 68  LSAKRV---IEKAVFNELVTLINP--GMTAYKPIKKKLNIFMMVGLQGAGKTTTVTKLAN 122

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                  K  + A DTFR+ A +QL   A      +      SD   +A +   + + +K
Sbjct: 123 YYKRRNWKTGVIAADTFRAGAREQLMQNAQTARIPYFVDFTESDPVQVALKGIDKFKKEK 182

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            ++ IIDT+GR      L A +  +   +       P  ++ V+D T GQ A  Q   F 
Sbjct: 183 FEIAIIDTSGRHMQEEALFAEMKSLAENV------VPDEIIFVMDGTIGQAAYDQALGFK 236

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
              G   +I+TK+D  A+GGG +  V   + P+ F+G GE   DLE F    F + + G 
Sbjct: 237 NAVGVGSIIITKLDSNAKGGGALSAVAATQSPISFIGSGENFTDLEWFDPSSFVSRLLGI 296

Query: 314 LD 315
            D
Sbjct: 297 AD 298


>gi|295397866|ref|ZP_06807929.1| signal recognition particle protein [Aerococcus viridans ATCC
           11563]
 gi|294973911|gb|EFG49675.1| signal recognition particle protein [Aerococcus viridans ATCC
           11563]
          Length = 484

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 108/209 (51%), Gaps = 13/209 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           P VI++ G+ G GKTT +GKL+   K +D   K +L AGD +R AAI+QL+    +   D
Sbjct: 101 PTVIMMAGLQGAGKTTTVGKLAAFLKKNDHK-KPLLVAGDIYRPAAINQLQTIGQQL--D 157

Query: 169 FVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                +G   +   +A +A + A+    D++ IDTAGRL  +  LM  +  +   ++   
Sbjct: 158 LPVFTLGDQVSPVEIATQAIEYAKMNGHDLVFIDTAGRLQIDERLMTELKDIKAAVE--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  +L  +D+ TGQ A    + F      TG+++TK+DG  RGG  + IV     P+
Sbjct: 215 ---PDEILLTVDSMTGQEAANVAKAFDEELDITGVVLTKLDGDTRGGAALSIVSVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F G GE +N++E F     +  I G  D
Sbjct: 272 KFTGTGEKLNEIERFYPDRMANRILGMGD 300


>gi|167043460|gb|ABZ08157.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine microorganism HF4000_APKG2H5]
          Length = 504

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 128/270 (47%), Gaps = 13/270 (4%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLSKPFNWD 106
           L   L+ +D  V  ++++ E +  +R  ++     +  D     LI+  L+ L  P    
Sbjct: 87  LRKALLEADFNVRHSKELTERI-ERRMLEEEPRPGIKLDTHAMNLIYAELVRLLGPAREI 145

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             H    IL+VG+ G GKTT   KL+       GLKV +   D  R  A +QL+   + T
Sbjct: 146 MPHN-QTILMVGLYGQGKTTTTAKLADWWRRRHGLKVAVIEADAHRPGAYEQLQQLLEGT 204

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           + D       SDA  +     +       DVLIIDTAGR   +  L   + ++  V    
Sbjct: 205 NVDVYGEPGESDATKIVRNGIRNVGT--ADVLIIDTAGRDGLDDELRDELVRIAEV---- 258

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
             +A    L V+DA  GQ A    + FH + G TG I+TK+DGTARGGG +  V T   P
Sbjct: 259 -ANATECFL-VIDAQVGQAAGPVAQSFHELVGVTGTIVTKLDGTARGGGALSAVATTGAP 316

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G GE I DLE F +  F + + G  D
Sbjct: 317 IVFVGEGERIQDLELFESDRFISRLLGLGD 346


>gi|121602489|ref|YP_988406.1| signal recognition particle protein [Bartonella bacilliformis
           KC583]
 gi|120614666|gb|ABM45267.1| signal recognition particle protein [Bartonella bacilliformis
           KC583]
          Length = 515

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P V++++G+ G GKTT   KL+K+++D    KV++A+ DT R AA +QL+   ++     
Sbjct: 100 PVVVMLIGLQGSGKTTTTAKLAKRLTDKHNKKVLMASLDTRRPAAQEQLRQLGEQGKLAS 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G  A  +A  A + A+    DV++ DTAGR H +  LM  + ++           
Sbjct: 160 LPIVPGQSAVDIAVRAVQAAKLGGYDVVLFDTAGRNHIDEALMLELAQIKA------SSL 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH +L V D+ TGQ+A+     F    G TG+I+T+MD   RGG  + +      P+  +
Sbjct: 214 PHEILLVADSLTGQDAVHLARSFDERVGLTGIILTRMDSDGRGGAALSMRAVTGKPIKAI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G+GE ++ LE F     +  I G  D
Sbjct: 274 GIGEKMDALEEFHPSRIADRILGMGD 299


>gi|310828469|ref|YP_003960826.1| signal recognition particle protein [Eubacterium limosum KIST612]
 gi|308740203|gb|ADO37863.1| signal recognition particle protein [Eubacterium limosum KIST612]
          Length = 448

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 7/205 (3%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           ++ ++VG+ G GKTT   K++  +  +   K +L A D +R AAIDQL+I          
Sbjct: 102 NIFMMVGLQGAGKTTTAAKIANLLRKEKKFKPLLVACDVYRPAAIDQLEILGKELDIPVY 161

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++   D   +A +A + A+ +  +++IIDTAGRL  +  LM  +  +  +L+      P
Sbjct: 162 LNKDEKDPRVIAKKALEFAETEGYNLMIIDTAGRLQIDETLMNELVDLKELLE------P 215

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+D  TGQ ++   + F+     TG+++TK+DG  RGG  + +  T    + ++G
Sbjct: 216 TEILLVVDGMTGQESVNVADEFNRQLEITGVVLTKLDGDTRGGAALSVTYTTGKTIKYIG 275

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE + D+E F     +  I G  D
Sbjct: 276 TGEKLTDIELFYPDRMANRILGMGD 300


>gi|325096521|gb|EGC49831.1| signal sequence receptor alpha subunit [Ajellomyces capsulatus H88]
          Length = 748

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 36/246 (14%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVA--QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKML 96
           RL DGV +EL        IG      Q I   L   R A + S++++L   S L + + +
Sbjct: 378 RLCDGVEQEL--------IGKKTGSFQSIDAAL---RAAMESSLRKILTPTSSLDLLREI 426

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             ++ P N     RP+VI +VGVNGVGK+T + K+   +     +V++AA DTFRS A++
Sbjct: 427 EAVTSPSNSQKRRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVE 486

Query: 157 QLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           QL++ A R   +    E            G DAA +A +A   A     DV++IDTAGR 
Sbjct: 487 QLRVHA-RNLKELSARENVGQVELYEKGYGKDAANVAKDAVAYAAMNNFDVVLIDTAGRR 545

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGL 261
           HN+  LM+ + K  +  +      P  +  V +A  G +++ Q   F+   GT     G 
Sbjct: 546 HNDQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRKLDGF 599

Query: 262 IMTKMD 267
           IM+K D
Sbjct: 600 IMSKCD 605


>gi|183981805|ref|YP_001850096.1| signal recognition particle protein Ffh [Mycobacterium marinum M]
 gi|183175131|gb|ACC40241.1| signal recognition particle protein Ffh [Mycobacterium marinum M]
          Length = 529

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 147/311 (47%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALQGLRGKGRLTDADIDATAREIRLALLEADVSLPVVRAFVHRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             VS      Q+V+  V+E +  +L   ++   +  +  P V+++ G+ G GKTT+ GKL
Sbjct: 62  AVVSGALNPAQQVVKIVNEELVGILGGQTRELVFAKTP-PTVVMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184
           + ++   G   +L A D  R AA++QL++   R          G+       D  A+A  
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGQRAGVPVFAPHPGASPESGPGDPVAVAAA 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +AQAK  DV+I+DTAGRL  +  LMA    + + +       P  VL VLDA  GQ+
Sbjct: 181 GLAEAQAKHFDVVIVDTAGRLGIDEELMAQASAIRKAIN------PDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   + F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVATAQAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|322368150|ref|ZP_08042719.1| signal recognition 54 kDa protein [Haladaptatus paucihalophilus
           DX253]
 gi|320552166|gb|EFW93811.1| signal recognition 54 kDa protein [Haladaptatus paucihalophilus
           DX253]
          Length = 464

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 97/204 (47%), Gaps = 8/204 (3%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
             IL+ G+ G GKTT   K++   S  GL+  +   DTFR  A DQ K    R   DF  
Sbjct: 98  QTILLAGLQGSGKTTTSAKMAWWFSKKGLRPAVIQTDTFRPGAYDQAKEMCSRAEVDFYG 157

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                D   +A +  ++      D+ I+DTAGR      L+  I ++  V+       P 
Sbjct: 158 DPDNEDPVDIARKGLEET--ADADIHIVDTAGRHALEDDLIDEIEEIESVVD------PD 209

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L VLDA  GQ A  Q + F    G  G+++TK+DGTA+GGG +  V      + FLG 
Sbjct: 210 RNLLVLDAAIGQGAKDQAQQFDESIGIDGVVITKLDGTAKGGGALTAVNETDSSIAFLGS 269

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE + D+E F    F + + G  D
Sbjct: 270 GETVQDVERFEPNGFISRLLGMGD 293


>gi|225561032|gb|EEH09313.1| signal sequence receptor alpha subunit [Ajellomyces capsulatus
           G186AR]
          Length = 914

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 36/246 (14%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVA--QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKML 96
           RL DGV +EL        IG      Q I   L   R A + S++++L   S L + + +
Sbjct: 378 RLCDGVEQEL--------IGKKTGSFQSIDAAL---RAAMESSLRKILTPTSSLDLLREI 426

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             ++ P N     RP+VI +VGVNGVGK+T + K+   +     +V++AA DTFRS A++
Sbjct: 427 EAVTSPSNSQKQRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVE 486

Query: 157 QLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           QL++ A R   +    E            G DAA +A +A   A     DV++IDTAGR 
Sbjct: 487 QLRVHA-RNLKELSARENVGQVELYEKGYGKDAANVAKDAVAYAAVNNFDVVLIDTAGRR 545

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGL 261
           HN+  LM+ + K  +  +      P  +  V +A  G +++ Q   F+   GT     G 
Sbjct: 546 HNDQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRKLDGF 599

Query: 262 IMTKMD 267
           IM+K D
Sbjct: 600 IMSKCD 605


>gi|84683446|ref|ZP_01011349.1| signal recognition particle protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84668189|gb|EAQ14656.1| signal recognition particle protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 501

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 136/269 (50%), Gaps = 12/269 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + VA+  V  +  K   + V+      Q+V+  V + +  +L     P     
Sbjct: 38  LLEADVSLPVARDFVRAVQDKATGQAVTKSVTPGQQVVKIVHDELVAVLTGAEDPGKLKI 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P  IL+VG+ G GKTT  GKL+K++ +    +V++A+ D +R AA+ QL++   +  
Sbjct: 98  DNAPAPILMVGLQGGGKTTTTGKLAKRLKERENKRVLMASLDVYRPAAMHQLEVLGGQIG 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D +    G     +A  A +QA     DV ++DTAGRL  + +LM  +  + + +    
Sbjct: 158 VDVLPIVEGQKPVDIAKRAKQQATMGGYDVYLLDTAGRLQIDEVLMQEVEDVSKAVN--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P   L V+D  TGQ A+   E F A  G +G+++T+MDG  RGG  + +      P+
Sbjct: 215 ---PRETLLVVDGLTGQVAVEVAEEFDAKVGISGVVLTRMDGDGRGGAALSMRAVTGKPI 271

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            F+GVGE ++ LE F     +  I G  D
Sbjct: 272 RFVGVGEKLDALETFEPDRIAGRILGMGD 300


>gi|195132635|ref|XP_002010748.1| GI21534 [Drosophila mojavensis]
 gi|193907536|gb|EDW06403.1| GI21534 [Drosophila mojavensis]
          Length = 636

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 144/303 (47%), Gaps = 44/303 (14%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102
           E++ D LI  ++   +A K+ + + T    K + +   +   V E + + L+ +  P   
Sbjct: 342 EKMRDHLISKNVASEIAAKLCDSVATSLEGKQMGTFDSIANMVKEALTQSLVRILSPKRR 401

Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                       + RP+ I+  GVNGVGK+T + K+   + +    V++AA DTFR+ A+
Sbjct: 402 IDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFSVLIAACDTFRAGAV 461

Query: 156 DQLKIWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QL+                 RT         G DAA +A EA K A   KVDV+++DTA
Sbjct: 462 EQLRTHTRHLNALHPAEKHKQRTMVQLYEKGYGKDAAGIAMEAIKYAHDTKVDVVLVDTA 521

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259
           GR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ ++A  +  
Sbjct: 522 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 575

Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                  G+++TK D    + G  I +      P+ F+G G+   DL+   A + +AV+ 
Sbjct: 576 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK---AINVNAVVN 632

Query: 312 GCL 314
             +
Sbjct: 633 SLM 635


>gi|294815366|ref|ZP_06774009.1| Signal recognition particle protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326443719|ref|ZP_08218453.1| signal recognition particle protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294327965|gb|EFG09608.1| Signal recognition particle protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 516

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  + ++  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIAKVKERARGAEVSKALNPAQQVIKIVNEELVAILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL   +   G   +L A D  R  A++Q
Sbjct: 88  GETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKLGHWLKSQGHSPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        + G+   D   +A ++ + A+ K  DV+++DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVAVYAPQPGNGVGDPVQVAKDSIEFARTKVHDVVVVDTAGRLGIDEELMRQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + I       + F   GE ++D + F     ++ I G  D
Sbjct: 261 ALSIAHVTGRQIMFASNGEKLDDFDAFHPDRMASRILGMGD 301


>gi|284163555|ref|YP_003401834.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Haloterrigena turkmenica DSM 5511]
 gi|284013210|gb|ADB59161.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Haloterrigena turkmenica DSM 5511]
          Length = 463

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 8/207 (3%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
             IL+ G+ G GKTT   K++   S  GL+  +   DTFR  A +Q K    R   DF  
Sbjct: 98  QTILLAGLQGSGKTTSAAKMAWWFSTKGLRPAVIQTDTFRPGAYEQAKEMTQRAEVDFYG 157

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +    D   +A +  ++    + DV I+DTAGR      L+  I ++  V        P 
Sbjct: 158 NPDNDDPVEIARKGLEKT--SEADVHIVDTAGRHALEDELIDEIEEIEDVAD------PD 209

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
           + L VLDA  GQ A  Q + F    G  G+++TK+DGTA+GGG +  V      + FLG 
Sbjct: 210 TSLLVLDAAIGQGAKDQAQQFDESIGIDGVVITKIDGTAKGGGALTAVDQTDSSIAFLGT 269

Query: 292 GEGINDLEPFVAKDFSAVITGCLDYGE 318
           GE + D+E F    F + + G  D G+
Sbjct: 270 GEEVQDIERFEPDGFISRLLGMGDLGQ 296


>gi|94495531|ref|ZP_01302111.1| signal recognition particle protein [Sphingomonas sp. SKA58]
 gi|94424919|gb|EAT09940.1| signal recognition particle protein [Sphingomonas sp. SKA58]
          Length = 491

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 146/283 (51%), Gaps = 16/283 (5%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIH 93
           +D VR  + ++   L+ +D+ + V ++ V++   +    DV  SV   Q V+  VS+ + 
Sbjct: 24  EDDVRAAMREVRIALLEADVALPVVRQFVDQATERAVGSDVLRSVTPGQMVVKIVSDTLT 83

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRS 152
           + L   +     D +  P VI++VG+ G GKTT   K++K++ +   K V++A+ D  R 
Sbjct: 84  ETLGSDTSDLMIDVTP-PAVIMMVGLQGSGKTTSTAKIAKRLKEKERKKVLMASLDVQRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA +QL +   +T    +    G     +A  A + A+ +  DV+++DTAGRLH +  LM
Sbjct: 143 AAQEQLAVLGTQTDVATLPIIAGQQPVDIARRALQAAKLQGFDVVMLDTAGRLHVDQALM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +  +       D   P  +L V+D+ TGQ+A+     F A    TG+++T+MDG ARG
Sbjct: 203 DEMKAVA------DVATPAEILLVVDSLTGQDAVNVATSFTAQVPLTGVVLTRMDGDARG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+ F G GE ++ +E F  +  +  I G  D
Sbjct: 257 GAALSMRAVTGRPIKFAGTGEKLDAIELFHPQRVAQRILGMGD 299


>gi|284097824|ref|ZP_06385807.1| signal recognition particle protein [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830666|gb|EFC34793.1| signal recognition particle protein [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 469

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 112/218 (51%), Gaps = 22/218 (10%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW------ 161
           S  P ++++VG+ G GKTT  GK+++  ++ G +V+L A D  R AA +QL         
Sbjct: 103 SQPPTIVMMVGLQGAGKTTTCGKVARVFTEQGKRVLLIAADPRRPAAAEQLAALGAGLDV 162

Query: 162 ----ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
               ADR  +  +      +      E  ++ +    DV+I+DT GRLH +  LM  + +
Sbjct: 163 PVHRADRALSTRL------EVVHFCSEGVRRGRDHGYDVVILDTGGRLHVDDDLMLELEQ 216

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +   +       P  VL V DA TGQ A+   E F    G TG+I+TK++G ARGG L+ 
Sbjct: 217 IKAAV------TPQEVLLVADAMTGQEAVNVAEQFDQRVGMTGVILTKIEGDARGGALLS 270

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +  T   PV +LGVGE  + LEPF     ++ I G  D
Sbjct: 271 MRATIGKPVKYLGVGEKSDALEPFHPDRMASRILGMGD 308


>gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040388|gb|ACT57184.1| signal recognition particle protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 461

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 132/278 (47%), Gaps = 21/278 (7%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL-- 99
           E+    + +D+ + V Q       +KR  +    +++L  +       +++H  L+ +  
Sbjct: 33  EIRRTFLEADVSLEVVQS-----FSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLG 87

Query: 100 SKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQ 157
            +    D +   P VI++VG+ G GKTT   K++    +    K+++A+ D  R AA +Q
Sbjct: 88  KESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQ 147

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+   ++   D +          +A  A + A+    D +I+DTAGR H N  LM  I +
Sbjct: 148 LRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISE 207

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +  +        PH +L V DA TGQ+A+     F  +   TG+I+T+MDG  RGG  + 
Sbjct: 208 IKSLTN------PHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALS 261

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +      P+  +G GE INDLE F     +  I G  D
Sbjct: 262 MRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGD 299


>gi|327313674|ref|YP_004329111.1| signal recognition particle protein [Prevotella denticola F0289]
 gi|326946347|gb|AEA22232.1| signal recognition particle protein [Prevotella denticola F0289]
          Length = 447

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 9/199 (4%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWAD 163
            +  +RP +IL+ G+ G GKTT  GKL+  +     K  +L A D +R AAI+QLK+  +
Sbjct: 93  LNLVNRPAIILMSGLQGSGKTTFSGKLANMLKTKEHKHPLLVACDVYRPAAIEQLKVVGE 152

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +                +A  A  +A+AK  DV+IIDTAGRL  +  +M  I       +
Sbjct: 153 QVGVPVYSEPDNKTVNEIADHAIAEAKAKGNDVVIIDTAGRLAVDEDMMNEI-------E 205

Query: 224 RLDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            L  H  P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I    
Sbjct: 206 SLKKHVTPDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAALSIRTVV 265

Query: 283 KIPVYFLGVGEGINDLEPF 301
             P+ F+G GE +  ++ F
Sbjct: 266 TKPIKFIGTGEKMEAVDVF 284


>gi|73667168|ref|YP_303184.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ehrlichia
           canis str. Jake]
 gi|72394309|gb|AAZ68586.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ehrlichia
           canis str. Jake]
          Length = 449

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 153/276 (55%), Gaps = 21/276 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDV-SVQRVLYDVS 89
           +ISS   D  + EE++  L+ +D+ ++V +  +    E+++ +   K V   Q ++  + 
Sbjct: 21  VISSEDFDSTM-EEVKIALLDADVALSVVKDFINNVKEKIVGETTVKGVLPTQMIIKKIQ 79

Query: 90  ELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + + ++L   S+  + + S +P  VI++VG+ GVGKTT   KL+ K+ +   +V++A+ D
Sbjct: 80  DCLIEILG--SEKQDLNISAKPFSVIMMVGLQGVGKTTTTAKLALKLKNKKKEVIMASLD 137

Query: 149 TFRSAAIDQLKIWA---DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
            +R AA  QL+I     D  +   + ++   D    A EA   AQ     VLI+DTAGRL
Sbjct: 138 LYRPAAQKQLEILGKQIDVKTLPIIENQAPVDIVKRAMEA---AQHGNYSVLILDTAGRL 194

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H + ++M  + K I+     D   P  ++ V D+  GQ+A+   + F+   G TG+I+T+
Sbjct: 195 HIDQVMMEEL-KAIK-----DLSCPSEIILVADSMIGQDAVNVAKSFNDSIGITGVILTR 248

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +DG +RGG  + + ++   P+ F+  GE ++DL+ F
Sbjct: 249 VDGDSRGGAALSMKMSIGSPIKFIATGEKLSDLDDF 284


>gi|298708560|emb|CBJ30645.1| SRP101, alpha subunit of the signal recognition particle receptor
           [Ectocarpus siliculosus]
          Length = 589

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 107/198 (54%), Gaps = 17/198 (8%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           + +  VG+NGVGK+T + K++  + + G+KV++AA DTFRS A++QL++           
Sbjct: 384 YSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVHCRCLDVPLFE 443

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                D++A+A EA K A  +  D ++IDTAGR+ NN  LM  + K+I      + + P 
Sbjct: 444 KGYARDSSAVAREAVKHAAEEGYDCVLIDTAGRMQNNEPLMRALSKLI------NENEPE 497

Query: 232 SVLQVLDATTGQNALRQVEMFH-AVAGTT---------GLIMTKMDG-TARGGGLIPIVV 280
            VL V +A  G + + Q++MF+ A+A  +         G+++TK D    + G  + +  
Sbjct: 498 LVLFVGEALVGNDGVNQLQMFNQALANNSPAGRYHQIDGVVLTKFDTIDTKVGAALSMCY 557

Query: 281 THKIPVYFLGVGEGINDL 298
               P+ F+G G+    L
Sbjct: 558 KTGQPILFVGTGQKYTHL 575


>gi|148298802|ref|NP_001091807.1| signal recognition particle receptor alpha subunit [Bombyx mori]
 gi|111608125|gb|ABH10806.1| signal recognition particle receptor alpha subunit [Bombyx mori]
          Length = 610

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 140/294 (47%), Gaps = 41/294 (13%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP- 98
           V ++L D LI  ++   +A K+ + +  K   K     D   + V   ++E + ++L P 
Sbjct: 314 VLDKLRDHLIGKNVAADIANKLCDSVAIKLEGKVLGTFDSVAKTVKATLTESLVRILSPK 373

Query: 99  -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                L    +     RP+V+   GVNGVGK+T + K+   + +  L V++AA DTFR+ 
Sbjct: 374 RRVDILRDCLHAKQEGRPYVMAFCGVNGVGKSTNLAKICFWLIENDLSVLIAACDTFRAG 433

Query: 154 AIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           A++QL+      +A                    G DAA +A EA + A   K DV++ID
Sbjct: 434 AVEQLRTHTRHLNALHPPARHHARHMVTLYEKGYGKDAAGIAMEAIRYASDTKTDVVLID 493

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259
           TAGR+ +N  LM  + K+I V      + P +VL V +A  G  A+ Q+  F+ A+A  +
Sbjct: 494 TAGRMQDNEPLMRALAKLIAV------NEPDTVLFVGEALVGNEAVDQLVKFNQALADYS 547

Query: 260 ---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
                    G+++TK D    + G  I +      P+ F+G G+   DL+   A
Sbjct: 548 SSSSPHVIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNA 601


>gi|123492715|ref|XP_001326126.1| SRP54-type protein [Trichomonas vaginalis G3]
 gi|121909036|gb|EAY13903.1| SRP54-type protein, putative [Trichomonas vaginalis G3]
          Length = 494

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 6/206 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           ++ ++VG+ G GKTT + KL+        +  + A DTFR+ A +QL   A      +  
Sbjct: 101 NIFMMVGLQGAGKTTTVTKLANFYKRRNWRTGVIAADTFRAGAREQLMQNAQTARIPYFV 160

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                D    A +  ++ +  K +++IIDT+GR      L A +  +   +       PH
Sbjct: 161 DFTEQDPVQAALKGIEKFRKDKYEIVIIDTSGRHMQEEALFAEMKALAAAVN------PH 214

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            ++ V+D T GQ A  Q   F    G   +I+TK+D  A+GGG +  V     P+ F+G 
Sbjct: 215 EIIFVMDGTIGQAAYDQALGFKNAVGVGSIIITKLDSNAKGGGALSAVAATNSPISFIGS 274

Query: 292 GEGINDLEPFVAKDFSAVITGCLDYG 317
           GE   DLE F    F + + G  D G
Sbjct: 275 GEQFTDLEWFDPNSFVSRLLGIQDPG 300


>gi|39939164|ref|NP_950930.1| signal recognition particle GTPase [Onion yellows phytoplasma OY-M]
 gi|39722273|dbj|BAD04763.1| signal recognition particle GTPase [Onion yellows phytoplasma OY-M]
          Length = 426

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 141/278 (50%), Gaps = 31/278 (11%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPLSKPFNWD 106
           L+ +D+ + V  K   E++ K+  K    Q VL  ++      +++++ L+ +      D
Sbjct: 8   LVEADVHLQVIDKF-NEIIEKKTLK----QEVLKGLNPKEHIIKIVNETLIQILGSTRAD 62

Query: 107 FSHRPHV----ILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAIDQL 158
            + +P+     ++++G+ G GKTT +GKL+    KK S    KV+L A D +R  A++QL
Sbjct: 63  LTFKPNCNLDTLMLIGLQGSGKTTTVGKLALWLRKKNSK---KVLLVACDIYRPGAVEQL 119

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K+   + + D V S+  +    +     K A  +  D +IIDTAGRL  +  +M      
Sbjct: 120 KVIGKQINID-VFSKPDTAVLDIVDAGLKHALQEGYDAVIIDTAGRLDIDETMM------ 172

Query: 219 IRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            + L+++   A P  +L V+D  +GQ +    + FH   G TG+I+TKMD   +GG  + 
Sbjct: 173 -QELQQIKAKANPSEILLVVDCLSGQQSANIAQSFHNQVGATGVILTKMDADTKGGAALS 231

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +     +P+ F+   E I+ L+PF     ++ + G  D
Sbjct: 232 VRAMTDLPLKFVSSSETIDSLDPFNPDRMASRLLGMGD 269


>gi|325860535|ref|ZP_08173639.1| signal recognition particle protein [Prevotella denticola CRIS
           18C-A]
 gi|325481920|gb|EGC84949.1| signal recognition particle protein [Prevotella denticola CRIS
           18C-A]
          Length = 456

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 9/199 (4%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWAD 163
            +  +RP +IL+ G+ G GKTT  GKL+  +     K  +L A D +R AAI+QLK+  +
Sbjct: 93  LNLVNRPTIILMSGLQGSGKTTFSGKLANMLKTKEHKHPLLVACDVYRPAAIEQLKVVGE 152

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +                +A  A  +A+AK  DV+IIDTAGRL  +  +M  I       +
Sbjct: 153 QVGVPVYSEPDNKTVNEIADHAIAEAKAKGNDVVIIDTAGRLAVDEDMMNEI-------E 205

Query: 224 RLDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            L  H  P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I    
Sbjct: 206 SLKKHVTPDETLFVVDSMTGQDAVNTAKEFNDRLDFNGVVLTKLDGDTRGGAALSIRTVV 265

Query: 283 KIPVYFLGVGEGINDLEPF 301
             P+ F+G GE +  ++ F
Sbjct: 266 TKPIKFIGTGEKMEAVDVF 284


>gi|219558941|ref|ZP_03538017.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           T17]
          Length = 341

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 138/280 (49%), Gaps = 19/280 (6%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E +  +L   ++ 
Sbjct: 14  EIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETRE 73

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
             +  +  P V+++ G+ G GKTT+ GKL+ ++   G   +L A D  R AA++QL++  
Sbjct: 74  LAFAKTP-PTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVG 132

Query: 163 DRTSADFVCSEIGS-------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +R          G+       D  A+A     +A+AK  DV+I+DTAGRL  +  LMA  
Sbjct: 133 ERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRLGIDEELMAQ- 191

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
              IR     D   P  VL VLDA  GQ+A+     F    G TG+ +TK+DG ARGG  
Sbjct: 192 AAAIR-----DAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAA 246

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + +     +P+ F   GE + D + F     ++ I G  D
Sbjct: 247 LSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGD 286


>gi|44836|emb|CAA32144.1| unnamed protein product [Neisseria gonorrhoeae]
          Length = 356

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 102/181 (56%), Gaps = 2/181 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +++++
Sbjct: 116 LGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYLMKDV 175

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IG
Sbjct: 176 RGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIG 235

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K     G  V+LAAGDTFR+AA +QL+ W  R +   +    G D+AA+ ++A + A
Sbjct: 236 KLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQTTG-DSAAVCFDAVQAA 294

Query: 190 Q 190
           +
Sbjct: 295 K 295


>gi|300024816|ref|YP_003757427.1| signal recognition particle protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526637|gb|ADJ25106.1| signal recognition particle protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 526

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 139/274 (50%), Gaps = 13/274 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V +   E++  K    +V  SV   Q V+  V++ +  ML   ++P
Sbjct: 33  EVRRALLEADVALDVVKDFTEKVKAKAVGAEVLRSVTPGQMVVKIVNDELVAMLGSDAQP 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIW 161
            +   +  P  IL+VG+ G GKTT   K++ ++++   K V++A+ DT R AA +QL++ 
Sbjct: 93  IDL-HAAPPVGILMVGLQGSGKTTTTAKIAYRLTNRDRKKVLMASLDTRRPAAQEQLRVL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            ++TS   +    G     +A  A   A+    DV+I DTAGR+  +  LM  +  +   
Sbjct: 152 GEQTSVATLPIVAGQTPLQIARRAEDAAKLGGFDVIIYDTAGRVTVDEELMDEVRDVKAA 211

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +       PH  L V D+ TGQ+A+   + F    G TG+++T+ DG  RGG  + +   
Sbjct: 212 IH------PHETLLVADSLTGQDAVNTAKAFDGRIGVTGIVLTRADGDGRGGAALSMRAV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+  +GVGE  + LE F     ++ I G  D
Sbjct: 266 TGKPIKLIGVGEKWDALEDFHPGRIASRILGMGD 299


>gi|296171453|ref|ZP_06852739.1| signal recognition particle protein [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295894139|gb|EFG73899.1| signal recognition particle protein [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 522

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALQGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKDRAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +  +  P V+++ G+ G GKT++ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELIGILGGETRQLAFAKTP-PTVVMLAGLQGSGKTSLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYE 184
           +  +   G   +L A D  R AA++QL++  +R          G        D  A+A  
Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGESPESGPGDPVAVAAA 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA     IR     D   P  VL VLDA  GQ+
Sbjct: 181 GLAEARAKHHDVVIVDTAGRLGIDDELMA-QAAAIR-----DAVDPDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   E F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|240280412|gb|EER43916.1| signal sequence receptor alpha subunit [Ajellomyces capsulatus
           H143]
          Length = 823

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 36/246 (14%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVA--QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKML 96
           RL DGV +EL        IG      Q I   L   R A + S++++L   S L + + +
Sbjct: 378 RLCDGVEQEL--------IGKKTGSFQSIDAAL---RAAMESSLRKILTPTSSLDLLREI 426

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             ++ P N     RP+VI +VGVNGVGK+T + K+   +     +V++AA DTFRS A++
Sbjct: 427 EAVTSPSNSQNRRRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVE 486

Query: 157 QLKIWADRTSADFVCSE-----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           QL++ A R   +    E            G DAA +A +A   A     DV++IDTAGR 
Sbjct: 487 QLRVHA-RNLKELSARENVGQVELYEKGYGKDAANVAKDAVAYAAMNNFDVVLIDTAGRR 545

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGL 261
           HN+  LM+ + K  +  +      P  +  V +A  G +++ Q   F+   GT     G 
Sbjct: 546 HNDQRLMSSLEKFAKFAQ------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRKLDGF 599

Query: 262 IMTKMD 267
           IM+K D
Sbjct: 600 IMSKCD 605


>gi|240851341|ref|YP_002972744.1| signal recognition particle protein [Bartonella grahamii as4aup]
 gi|240268464|gb|ACS52052.1| signal recognition particle protein [Bartonella grahamii as4aup]
          Length = 522

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 140/285 (49%), Gaps = 35/285 (12%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIH-----K 94
           E+   L+ +D+ + V +   + +  K    ++         V ++++D  EL+H      
Sbjct: 33  EIRRALLEADVALDVVRSFTDRVREKAVGAEIVKSIKPGQMVVKIVHD--ELVHILGNES 90

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSA 153
           +L  L+ P        P VI+++G+ G GKTT   KL+K+ +D    KV++A+ DT R A
Sbjct: 91  VLSDLNAPA-------PVVIMMIGLQGSGKTTTTAKLAKRFTDKHHKKVLMASLDTRRPA 143

Query: 154 AIDQLKIWADRT---SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           A +QL+   ++    S   +  ++  D A+ A +A   A+    DVL++DTAGR H +  
Sbjct: 144 AQEQLRQLGEQAKLASLPIIAGQLPVDIASRAVQA---AKLGGYDVLLLDTAGRNHIDEA 200

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + ++           PH ++ V D+ TGQ+A+     F    G TG+I+T+MD   
Sbjct: 201 LMLELAEIKAC------SLPHEIMLVADSLTGQDAVHLARSFDERVGITGIILTRMDSDG 254

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + +      P+  +G GE I+ LE F     +  I G  D
Sbjct: 255 RGGAALSMRAVTGKPIKAIGTGEKIDALEEFHPSRIADRILGMGD 299


>gi|194762610|ref|XP_001963427.1| GF20395 [Drosophila ananassae]
 gi|190629086|gb|EDV44503.1| GF20395 [Drosophila ananassae]
          Length = 628

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 144/303 (47%), Gaps = 44/303 (14%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102
           E++ D LI  ++   +A K+ + + +    K + +   V   V E + + L+ +  P   
Sbjct: 334 EKMRDHLISKNVAAEIAAKLCDSVASSLEGKQMGTFDSVAGQVKEALTQSLVRILSPKRR 393

Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                       + RP+ I+  GVNGVGK+T + K+   + +    V++AA DTFR+ A+
Sbjct: 394 IDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 453

Query: 156 DQLKIWAD-------------RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QL+                 RT         G DAA +A EA K A   KVDV+++DTA
Sbjct: 454 EQLRTHTRHLNALHPATKHNGRTMVQLYEKGYGKDAAGIAMEAIKFAHDTKVDVVLVDTA 513

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259
           GR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ ++A  +  
Sbjct: 514 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 567

Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                  G+++TK D    + G  I +      P+ F+G G+   DL+   A + +AV+ 
Sbjct: 568 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK---AINVTAVVN 624

Query: 312 GCL 314
             +
Sbjct: 625 SLM 627


>gi|257052337|ref|YP_003130170.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halorhabdus utahensis DSM 12940]
 gi|256691100|gb|ACV11437.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halorhabdus utahensis DSM 12940]
          Length = 469

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 8/205 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P  I++ G+ G GKTT   K++   S  GL+  +   DT+R  A +Q +  A+R   DF 
Sbjct: 97  PQTIVLAGLQGSGKTTSAAKIAWWFSKKGLRPAVIQTDTWRPGAYEQAEEMAERAEVDFY 156

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  +A +  +       DV I+DTAGR   +++    I ++  +    DP   
Sbjct: 157 GDPDEDDAVKIARDGLEAT--DDADVQIVDTAGR---HALEDGLIDELEDIESVADPD-- 209

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H++L VLDA  GQ A  Q   F    G  G+++TK+DGTA+GGG +  V      + FLG
Sbjct: 210 HNLL-VLDAAIGQEAKEQASRFEDAVGIDGVVITKLDGTAKGGGALVAVNETDSTIAFLG 268

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE + D+E F    F + + G  D
Sbjct: 269 TGETVKDVERFEPSGFISRLLGMGD 293


>gi|255513329|gb|EET89595.1| GTP-binding signal recognition particle SRP54 G- domain [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 431

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 143/295 (48%), Gaps = 24/295 (8%)

Query: 28  LKEGITDIISSRRLD-DGVRE---ELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDV 79
           L++ I  I  S  +D + +RE   EL+  L+ +D+ V +     + I E+ L  +    +
Sbjct: 7   LRQAIAKISRSTIIDVNTIREFSKELQKTLLMADVEVNLVAEFTKSIQEQALKSKPPPGL 66

Query: 80  SVQRVLYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
             +     ++ ++++ L  L  K +    S +   IL+ G+ G GKTT   KL+K   D 
Sbjct: 67  DPREY---ITNMVYEELTKLMGKTYEPQISKK--RILLAGLYGSGKTTTAAKLAKYYQDR 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           GL   +   D  R AA  QL+  A + +  F   +   D   +     +  + K   V+I
Sbjct: 122 GLSAGVICCDVTRPAAYQQLETLAKQANVAFFGIKDSKDPVKIVKSGLEAMKGK--GVVI 179

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRL-DPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
            DT+GR    S L A    ++  LKR+ D  AP   + V+ A  GQ A RQ   F     
Sbjct: 180 CDTSGR----SALDAN---LVEELKRVSDAFAPEEKVLVVSADIGQVAGRQAREFAKAIS 232

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            +G+I+TKMDG+A+GGG +        PV F+G GE I+++EPF ++ F   + G
Sbjct: 233 ISGVIVTKMDGSAKGGGALSAANAAHAPVMFIGTGEKISNIEPFDSEKFIGELLG 287


>gi|58221315|gb|AAW68300.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 140

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 77/118 (65%), Gaps = 1/118 (0%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + E ++ ++ PL KP     +  P VI++ G+NG GKTT IGK +K     G  V+LAAG
Sbjct: 22  LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKFAKYFQAQGKSVLLAAG 81

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           DTFR+AA +QL+ W  R +   V S+   D+AA+ ++A + A+A+ +D+++ DTAGRL
Sbjct: 82  DTFRAAAREQLQAWGGRNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138


>gi|329770523|ref|ZP_08261901.1| signal recognition particle protein [Gemella sanguinis M325]
 gi|328836272|gb|EGF85941.1| signal recognition particle protein [Gemella sanguinis M325]
          Length = 450

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 20/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+  I  +    ++ +  V+E + ++   L+ +D+   V ++ V+++  +   
Sbjct: 3   FENLSERLQNTIAKLTGKGKVSESDVKEMMREVRLALLEADVNFKVVKEFVKKISERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+++  V+E + ++L   +   N     +   +++VG+ G GKTT  GKL
Sbjct: 63  TEVMKSLTPAQQIVKIVNEELVELLGGTNVELNQ--GGKITTVMMVGLQGAGKTTTAGKL 120

Query: 132 S-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + K       K +L A D +R AA+ QLK    +   D     +  D A +  E  + A+
Sbjct: 121 ALKAKKTMKKKPLLIAADVYRPAAVQQLKTLGKQL--DIEVFFVDKDPADIVKEGLEFAK 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               + +IIDTAGRLH + +LM  +  +  V        P  +L V+DA  GQ A+    
Sbjct: 179 ENYYNYVIIDTAGRLHIDELLMDELKDIKSV------SNPDEILLVVDAMIGQEAVNIAT 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TGL++TK+DG  RGG  + I      P+  +G+GE +NDLE F  +  ++ I
Sbjct: 233 SFDEQLDITGLVLTKLDGDTRGGAALSIKSITGKPIKLVGMGEKMNDLELFHPERMASRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|195048490|ref|XP_001992537.1| GH24806 [Drosophila grimshawi]
 gi|193893378|gb|EDV92244.1| GH24806 [Drosophila grimshawi]
          Length = 628

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 145/303 (47%), Gaps = 44/303 (14%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102
           E++ D LI  ++   +A K+ + + T    K + +   +   V E + + L+ +  P   
Sbjct: 334 EKMRDHLISKNVASEIAGKLCDSVATSLEGKQMGTFDSIANMVKEALTQSLVRILSPKRR 393

Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                       + RP+ I+  GVNGVGK+T + K+   + +    V++AA DTFR+ A+
Sbjct: 394 IDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 453

Query: 156 DQLKIWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QL+                +RT         G DAA +A EA K A   K+DV+++DTA
Sbjct: 454 EQLRTHTRHLNALHPAVKHNNRTMVQLYEKGYGKDAAGIAMEAIKFANDTKIDVVLVDTA 513

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259
           GR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ ++A  +  
Sbjct: 514 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 567

Query: 260 -------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                  G+++TK D    + G  I +      P+ F+G G+   DL+   A + +AV+ 
Sbjct: 568 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK---AINVNAVVN 624

Query: 312 GCL 314
             +
Sbjct: 625 SLM 627


>gi|148508291|gb|ABQ76075.1| signal recognition particle 54K protein [uncultured haloarchaeon]
          Length = 465

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 8/210 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           D   +   IL+ G+ G GKTT   K++   S  GL+  +   DTFR  A DQ +   +R 
Sbjct: 92  DLPLKSQTILLAGLQGSGKTTSAAKMAWWFSTKGLRPAVIQTDTFRPGAYDQAEQMCERA 151

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
              F       D   +A E  +       D+ I+DTAGR    + L+  I  +   +   
Sbjct: 152 EVSFYGDPDCDDPVKIAREGIEAT--ADADIHIVDTAGRHALEADLIDEIEAIDSTV--- 206

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP   L VLDA  GQ A +Q   F+   G  G+++TK+DGTA+GGG +  V      
Sbjct: 207 ---APDRSLLVLDAAIGQGAKQQAREFNNAIGIDGVVVTKLDGTAKGGGALTAVNETDSS 263

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + FLG GE + D+E F    F + + G  D
Sbjct: 264 IAFLGTGETVQDVERFEPNGFISRLLGMGD 293


>gi|110669292|ref|YP_659103.1| signal recognition particle 54K protein [Haloquadratum walsbyi DSM
           16790]
 gi|121687082|sp|Q18EV2|SRP54_HALWD RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|109627039|emb|CAJ53515.1| signal recognition particle 54K protein [Haloquadratum walsbyi DSM
           16790]
          Length = 466

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 8/210 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           D   +   IL+ G+ G GKTT   K++   S  GL+  +   DTFR  A DQ +   +R 
Sbjct: 92  DLPLKSQTILLAGLQGSGKTTSAAKMAWWFSTKGLRPAVIQTDTFRPGAYDQAEQMCERA 151

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
              F       D   +A E  +       D+ I+DTAGR    + L+  I  +   +   
Sbjct: 152 EVSFYGDPDCDDPVKIAREGIEAT--ADADIHIVDTAGRHALEADLIDEIEAIDSTV--- 206

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP   L VLDA  GQ A +Q   F+   G  G+++TK+DGTA+GGG +  V      
Sbjct: 207 ---APDRSLLVLDAAIGQGAKQQAREFNNAIGIDGVVVTKLDGTAKGGGALTAVNETDSS 263

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + FLG GE + D+E F    F + + G  D
Sbjct: 264 IAFLGTGETVQDVERFEPNGFISRLLGMGD 293


>gi|302537184|ref|ZP_07289526.1| signal recognition particle protein [Streptomyces sp. C]
 gi|302446079|gb|EFL17895.1| signal recognition particle protein [Streptomyces sp. C]
          Length = 524

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 134/267 (50%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+VL  V++ +  +L 
Sbjct: 28  DAAAREIRIALLEADVALPVVRSFISNVKERARGAEVSKALNPGQQVLKIVNDELVAILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P VI++ G+ G GKTT+ GKL   +   G   +L A D  R  A++Q
Sbjct: 88  GETRRLRFAKTA-PTVIMLAGLQGAGKTTLAGKLGFWLKGQGHTPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        + G+   D   +A ++ + A+AK+ D++I+DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVAVYAPQPGNGVGDPVQVAKDSVEYARAKQHDIVIVDTAGRLGIDQELMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I       + F   GE ++D + F
Sbjct: 261 ALSIAHVTGKQIMFASNGEKLDDFDAF 287


>gi|90421745|ref|YP_530115.1| signal recognition particle protein [Rhodopseudomonas palustris
           BisB18]
 gi|90103759|gb|ABD85796.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Rhodopseudomonas palustris BisB18]
          Length = 514

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  I++VG+ G GKTT   KL+++++     +V++A+ D +R AA++QL I       D 
Sbjct: 100 PVPIMMVGLQGSGKTTTTAKLARRLTQRDKRRVLMASLDVYRPAAMEQLAILGRDLEIDT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G   A +A  A + A+    DV+++DTAGR   +  +MA   ++  V       +
Sbjct: 160 LPIVDGQKPAQIARRAIEAAKLGGYDVVLLDTAGRTTLDDEMMAEAAEIKAV------AS 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V D+ TGQ+A+     F    G TG+++T++DG  RGG  + +      P+  +
Sbjct: 214 PHEVLLVADSLTGQDAVNLARAFDTQVGLTGIVLTRVDGDGRGGAALSMRAVTGKPIKLM 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE  + LE F     +  I G  D
Sbjct: 274 GTGEKTDALEDFHPSRIAGRILGMGD 299


>gi|14719790|pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
           A. Ambivalens
          Length = 297

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 147/315 (46%), Gaps = 38/315 (12%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV----AVA 63
           S+ L  +R   + F + S    + + D I          +EL+  LI +D+ V    ++ 
Sbjct: 1   SKLLDNLRDTVRKFLTGSSSYDKAVEDFI----------KELQKSLISADVNVKLVFSLT 50

Query: 64  QKIVEELLTKRYAKDVSVQ----RVLYDVSELIHKMLMPLSKPFNWDFSHR------PHV 113
            KI E L  ++    +  +    +++YD           LS  F  D   +      P+V
Sbjct: 51  NKIKERLKNEKPPTYIERREWFIKIVYD----------ELSNLFGGDKEPKVIPDKIPYV 100

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I++VGV G GKTT  GKL+      G KV L   D +R AA++QL+    +         
Sbjct: 101 IMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEP 160

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D   +A    ++  ++K++++I+DTAGR H      A + +M  + + +    P  V
Sbjct: 161 GEKDVVGIAKRGVEKFLSEKMEIIIVDTAGR-HGYGEEAALLEEMKNIYEAI---KPDEV 216

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             V+DA+ GQ A      F+  +    +I+TKMDGTA+GGG +  V      + F+G GE
Sbjct: 217 TLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGE 276

Query: 294 GINDLEPFVAKDFSA 308
            I++LE F  + F A
Sbjct: 277 KIDELEVFNPRRFVA 291


>gi|320589543|gb|EFX02004.1| signal sequence receptor alpha [Grosmannia clavigera kw1407]
          Length = 669

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 143/291 (49%), Gaps = 42/291 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLT-----KRYAKDVSVQRVLYDVSELIHKMLMPLSK-- 101
           +ED L+R ++    A ++ E +       K    + +  RV   +   + KML P S   
Sbjct: 376 MEDHLLRKNVAREAAVRLCESVEADLVGVKTGNFESTNARVKTALEAALTKMLTPTSSLD 435

Query: 102 -----------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
                      P       RP+VI +VGVNGVGK+T + K+   +     +V++AAGDTF
Sbjct: 436 LLREIDAVTAPPVTSLRKPRPYVISIVGVNGVGKSTNLSKICFFLLQNRYRVLIAAGDTF 495

Query: 151 RSAAIDQLKI----WADRTSADFVCSEI-------GSDAAALAYEAFKQAQAKKVDVLII 199
           RS A++QL +      + TS D   S +       G DAAA+A +A   A  K  DV++I
Sbjct: 496 RSGAVEQLAVHVRNLQELTSRDQNGSAVELYQRGYGKDAAAVAKDAVAFAAQKGFDVVLI 555

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGR HN+  LM+ + K  +         P  +L V +A  G +++ Q   F++  G+ 
Sbjct: 556 DTAGRRHNDQRLMSSLEKFAKFAH------PDKILMVGEALVGTDSVAQARSFNSAFGSN 609

Query: 260 ----GLIMTKMDGTARG--GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               G I++K D T  G  G L+ +V    +P+ F+GVG+  +DL  F  K
Sbjct: 610 RSLDGFIISKCD-TVGGMVGTLVSLVHATNVPILFVGVGQHYSDLRNFSVK 659


>gi|189236353|ref|XP_001807129.1| PREDICTED: similar to signal recognition particle receptor alpha
           subunit (sr-alpha) [Tribolium castaneum]
 gi|270005877|gb|EFA02325.1| hypothetical protein TcasGA2_TC007993 [Tribolium castaneum]
          Length = 614

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 140/293 (47%), Gaps = 41/293 (13%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP--- 98
           ++++D LI  ++   +A K+ E +  K   K     +     V   ++E + ++L P   
Sbjct: 320 DKMKDHLIAKNVAADIAIKLCESVALKLEGKVLGTFESVASTVKSTLTESLVQILSPKRR 379

Query: 99  ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              L        S RP+V+   GVNGVGK+T + K+   + +  ++V++AA DTFR+ A+
Sbjct: 380 VDILRDCMEAQRSGRPYVMTFCGVNGVGKSTNLAKICFWLIENNMRVLIAACDTFRAGAV 439

Query: 156 DQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QL+                 R          G DAA +A EA K A   + DV++IDTA
Sbjct: 440 EQLRTHMRHLNALHPPERHGGRQMVQLYEKGYGKDAAGIAMEAIKYATDSRFDVVLIDTA 499

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259
           GR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ A+A  +  
Sbjct: 500 GRMQDNEPLMRALTKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYSSS 553

Query: 260 -------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                  G+++TK D    + G  I +      P+ F+G G+   DL+   AK
Sbjct: 554 SNPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNAK 606


>gi|195479500|ref|XP_002100909.1| Gtp-bp [Drosophila yakuba]
 gi|194188433|gb|EDX02017.1| Gtp-bp [Drosophila yakuba]
          Length = 617

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 137/288 (47%), Gaps = 41/288 (14%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102
           E++ D LI  ++   +A K+ + + T    K + +   +   V E + + L+ +  P   
Sbjct: 323 EKMRDHLISKNVATEIAAKLCDSVATSLDGKQMGTFDSIASQVKEALTQSLVRILSPKRR 382

Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                       + RP+ I+  GVNGVGK+T + K+   + +    V++AA DTFR+ A+
Sbjct: 383 IDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 442

Query: 156 DQLKIWAD-------------RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QL+                 RT         G DAA +A EA K A   +VDV+++DTA
Sbjct: 443 EQLRTHTRHLNALHPAAKHDGRTMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTA 502

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259
           GR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ ++A  +  
Sbjct: 503 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 556

Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
                  G+++TK D    + G  I +      P+ F+G G+   DL+
Sbjct: 557 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK 604


>gi|156398259|ref|XP_001638106.1| predicted protein [Nematostella vectensis]
 gi|156225224|gb|EDO46043.1| predicted protein [Nematostella vectensis]
          Length = 625

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 154/321 (47%), Gaps = 51/321 (15%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           KG A  S   KE I+ ++          E++++ L   ++   +++K+ + + TK   K 
Sbjct: 312 KGLAGQSTLAKEQISPVL----------EKMKEHLTSKNVAADISEKLCDSVATKLEGKV 361

Query: 79  VSV-----QRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +         V   + E + ++L P      L          +P+V+   GVNGVGK+T 
Sbjct: 362 IGTFSGIASTVKSSLEESLIQILSPKRRVDILRDAMENKRKGKPYVVTFCGVNGVGKSTN 421

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-------------I 174
           + K+   + +   +VM+AA DTFR+ A++QL+      +A    +               
Sbjct: 422 LAKVCFWLLENNFRVMIAACDTFRAGAVEQLRTHVRHLNALHPPAHANGPPSVLLYEKGY 481

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA++A +A   A+ ++VDV+++DTAGR+ +N  LM  + K+I++      + P  VL
Sbjct: 482 GKDAASIAMDAINFAREQRVDVVLVDTAGRMQDNEPLMRALSKLIKL------NDPDLVL 535

Query: 235 QVLDATTGQNALRQVEMFH-AVAGTT---------GLIMTKMDG-TARGGGLIPIVVTHK 283
            V +A  G  A+ Q++ F+ A+A  +         G+++TK D    + G  I +  T  
Sbjct: 536 FVGEALVGNEAVDQLKKFNQALADHSSQDRPRLIDGILLTKFDTIDDQVGAAISMTYTTG 595

Query: 284 IPVYFLGVGEGINDLEPFVAK 304
            P+ F+G G+   DL+    K
Sbjct: 596 QPIVFVGTGQTYKDLKSLNVK 616


>gi|256390708|ref|YP_003112272.1| signal recognition particle protein [Catenulispora acidiphila DSM
           44928]
 gi|256356934|gb|ACU70431.1| signal recognition particle protein [Catenulispora acidiphila DSM
           44928]
          Length = 515

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 145/291 (49%), Gaps = 19/291 (6%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSE 90
           +S + +DD +R  +   L+ +D+ +   +  +  +  +    +VS      Q+++  V+E
Sbjct: 22  LSPQDIDDTLRA-IRQALLEADVSLQAVRPFIAAVRERAEGAEVSKALNPAQQIIKIVNE 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  +L   ++   +   + P VI++ G+ G GKTT+ GKL++ +   G   +L A D  
Sbjct: 81  ELVAILGGETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKLARWLKSEGHTPILVAADLQ 139

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           R  A+ QL++  +R        E G+   +   +A ++   A+ K  DV+I+DTAGRL  
Sbjct: 140 RPNAVTQLQVVGERAGVPVFAPEPGNGVGNPVKVAKDSIDFAKTKLHDVVIVDTAGRLGI 199

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           ++ LM      IR     D  +P  VL V+DA  GQ+A+   + F    G  G+++TK+D
Sbjct: 200 DAELMKQAAD-IR-----DAVSPDEVLFVVDAMIGQDAVITAQAFMDGVGFDGVVLTKLD 253

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
           G ARGG  + +      PV F   GE + D + F  +  +  I   LD G+
Sbjct: 254 GDARGGAALSVRQVTGKPVMFASSGEKLEDFDVFHPERMAGRI---LDMGD 301


>gi|330723941|gb|AEC46311.1| signal recognition particle protein [Mycoplasma hyorhinis MCLD]
          Length = 445

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 152/309 (49%), Gaps = 25/309 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L+K F  +  K+    T  +    L++ +RE ++  L+ +D+ + + +  ++E+  K  A
Sbjct: 5   LSKRFQKSFAKMNAKTT--LKEEDLNEVIRE-IKLALLEADVNLLIVKDFIKEIKEKALA 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +++      Q+ +  V+E + ++L    KP    ++     I++VG+ G GKTT + KL
Sbjct: 62  TEITSTLNPQQQFIKIVNENLVQVLG--EKPKQIKYNRPIEKIVLVGLQGSGKTTTVAKL 119

Query: 132 S-----KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           +     KK      K +L   D +R AAI+QL I   +     V S+  S    +     
Sbjct: 120 AHFSLRKKHIQ---KPLLITADIYRPAAIEQL-IQLGKQINIPVFSQKDSTPQEIVSAGL 175

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A +   D++IIDTAGRL  +  LM  +  + ++ K      PH +  V DA +GQ+ +
Sbjct: 176 DYASSNDFDLVIIDTAGRLSIDEKLMQELKDIEKIAK------PHEIFFVADALSGQDII 229

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F+     +G I+TK+D  ARGG  + ++   KIP+ F+G GE I + + F     
Sbjct: 230 NVAKTFNENITLSGSIITKLDSDARGGAALSLIKLLKIPIVFIGTGEKITNFDLFYPDRM 289

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 290 ASRILGMGD 298


>gi|313678330|ref|YP_004056070.1| signal recognition particle protein [Mycoplasma bovis PG45]
 gi|312950595|gb|ADR25190.1| signal recognition particle protein [Mycoplasma bovis PG45]
          Length = 452

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 135/283 (47%), Gaps = 23/283 (8%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRY---------AKDVSVQRVLYDVSELIHK 94
           GV  +++  L+ +D+ + V +  V  +  K           A+   ++ V  ++ +++ K
Sbjct: 29  GVARDIKMALLEADVNLKVVKDFVANVKEKALSANLVGTLNAEQTMIKIVHNELVDILGK 88

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRS 152
            + P+      + + +P++I++ G+ G GKTT   K++   K  +   K +L A D +R 
Sbjct: 89  EVRPI------EITKKPYIIMMTGLQGSGKTTACAKIAHFLKKKNQIEKPLLVAADIYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA+ QL   A     D+        A  +  E+   A+  K D++IIDTAGRL  +  LM
Sbjct: 143 AAVQQLVTLAKGIQVDYFEKGTNVSAQQIVKESLTFAKENKNDLIIIDTAGRLSIDEPLM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + ++  + +      P  +  V DA +GQ+ +     F+     TG ++TK+D  ARG
Sbjct: 203 NELWELKNICE------PQEIFFVADALSGQDIINVANTFNNRLKLTGSVITKLDSDARG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +     +P+ F+G GE I +L+ F     +  I G  D
Sbjct: 257 GAALSLSKVLSLPIRFIGTGEKIGNLDLFYPDRMADRILGMGD 299


>gi|291448077|ref|ZP_06587467.1| signal recognition particle protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351024|gb|EFE77928.1| signal recognition particle protein [Streptomyces roseosporus NRRL
           15998]
          Length = 517

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIANVKERARGVEVSQALNPAQQVVKIVNEELVAILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P VI++ G+ G GKTT+ GKL   +   G   +L A D  R  A++Q
Sbjct: 88  GETRRLRFAKTA-PTVIMLAGLQGAGKTTLAGKLGLWLKGQGHSPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+AK  D++I+DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEFAKAKVHDIVIVDTAGRLGIDQELMQQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I       V F   GE + D + F
Sbjct: 261 ALSIAHVTGKQVMFASNGEKLEDFDAF 287


>gi|47214780|emb|CAG00952.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 648

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 112/220 (50%), Gaps = 30/220 (13%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA- 167
            RP VI   GVNGVGK+T + K+S  + + G  V++AA DTFR+ A++QL+    R ++ 
Sbjct: 426 RRPFVITFCGVNGVGKSTNLAKISFWLIENGFTVLIAACDTFRAGAVEQLRTHQRRLNSL 485

Query: 168 ------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
                              G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  +
Sbjct: 486 HPPERHGGRPMVQLYEKGYGKDAAGIAMEAIAYARNQAFDVVLVDTAGRMQDNAPLMTAL 545

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT---------GLIMTK 265
            K+I V      + P  VL V +A  G  A+ Q+  F+ A+A  +         G+++TK
Sbjct: 546 AKLIAV------NMPDLVLFVGEALVGNEAVDQLVKFNQALADHSMSDRPRLIDGIVLTK 599

Query: 266 MDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            D    + G  I +      P+ F+G G+  NDL    A+
Sbjct: 600 FDTIDDKVGAAISMTYITGQPIVFVGTGQTYNDLRNLNAR 639


>gi|239944613|ref|ZP_04696550.1| putative signal recognition particle protein [Streptomyces
           roseosporus NRRL 15998]
 gi|239991077|ref|ZP_04711741.1| putative signal recognition particle protein [Streptomyces
           roseosporus NRRL 11379]
          Length = 496

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 7   DATAREIRIALLEADVALPVVRAFIANVKERARGVEVSQALNPAQQVVKIVNEELVAILG 66

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P VI++ G+ G GKTT+ GKL   +   G   +L A D  R  A++Q
Sbjct: 67  GETRRLRFAKTA-PTVIMLAGLQGAGKTTLAGKLGLWLKGQGHSPLLVACDLQRPNAVNQ 125

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+AK  D++I+DTAGRL  +  LM  
Sbjct: 126 LSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEFAKAKVHDIVIVDTAGRLGIDQELMQQ 185

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 186 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 239

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I       V F   GE + D + F
Sbjct: 240 ALSIAHVTGKQVMFASNGEKLEDFDAF 266


>gi|321309532|ref|YP_004191861.1| signal recognition particle protein Ffh [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801376|emb|CBY92022.1| signal recognition particle protein Ffh [Mycoplasma haemofelis str.
           Langford 1]
          Length = 445

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 134/268 (50%), Gaps = 18/268 (6%)

Query: 53  LIRSDIGVAVAQKIVEE----LLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWD 106
           L+ SD+ + V +  ++E    LL K   KD  +  V++     I + L+ +  +K    +
Sbjct: 39  LLNSDVNLKVVKSFLDEVKSDLLGKPIDKDQELDVVVFST---IKRHLINILGTKHVPLN 95

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADR 164
            S + + ILV+G+NG GKTT + K+SK +S      KV   + D +R  A DQL+  ++ 
Sbjct: 96  LSSKLNKILVIGLNGSGKTTTVAKISKHLSSLKGSSKVRNISLDIYRPGAFDQLQHLSNS 155

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +   +E   + ++   E+  +A    +D L+ D+ G L +N  LM  +  + +++  
Sbjct: 156 FGVESYFAE-NKNFSSFIKESIFEADKDGIDFLVFDSYGLLSDNEDLMKELSSIRKLIN- 213

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  VL VLDA  GQ  L  +  F+   G TGL+++K D  +  G         K+
Sbjct: 214 -----PSEVLFVLDAMAGQEILDVLTKFNEEFGITGLVISKADSLSPMGAAFSASYLFKL 268

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITG 312
           P+ FLG GE +++L  F  +  +++I G
Sbjct: 269 PIKFLGDGETVDNLSTFHPERIASLILG 296


>gi|89898160|ref|YP_515270.1| signal recognition particle GTPase [Chlamydophila felis Fe/C-56]
 gi|89331532|dbj|BAE81125.1| signal recognition particle GTPase [Chlamydophila felis Fe/C-56]
          Length = 448

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 141/284 (49%), Gaps = 17/284 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELLTKRYAKDVSV-QRVLYDVSE 90
           I+   + + +RE +   L+ +D+   V +    K+ +++L +   K VS  Q+ +  + E
Sbjct: 22  ITEENISEAIRE-VRLALLDADVNYHVVKSFIAKVKQKILGEEVWKHVSPGQQFIRHLHE 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGD 148
            + ++L  +S   +   S  P V+L+ G+ G GKTT   KL+  + +     KV++   D
Sbjct: 81  ELTELL--ISSEADLTTSGNPGVVLLCGLQGTGKTTTCAKLAAYVLEKRKAKKVLVVPCD 138

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             R AA+DQL+    +T A+   SE   D   +  +A   A+    D+++IDTAGRLH +
Sbjct: 139 LKRYAAVDQLRNLISKTKAELYNSE-AQDPVKVVSQALDYAKQNGHDLVLIDTAGRLHVD 197

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M  +  + +  K  +       L V++   GQ+A+   + F      TG+I++  DG
Sbjct: 198 EAMMEELASIQKASKSCER------LFVMNLAMGQDAVTTAKAFDDCLDLTGVIISMTDG 251

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            AR G ++ +      P+ F G GE I DL PF A+  +  I G
Sbjct: 252 DARAGAVLSMKSLLGKPIKFEGCGEKIQDLRPFNAESMADRILG 295


>gi|269468029|gb|EEZ79750.1| signal recognition particle GTPase [uncultured SUP05 cluster
           bacterium]
          Length = 196

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 86/142 (60%), Gaps = 3/142 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPH 112
           I +DIG+    K++E +      K +     LY  + + + K+L+      N +  +   
Sbjct: 57  ITADIGINTTDKVLESVRKNASRKILKNSDSLYQFLKDELRKLLID-DNQLNINV-NSTF 114

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VILVVGVNG GKTT IGKL+K   + G  VMLAAGDTFR+AA++QLK+W +R     V  
Sbjct: 115 VILVVGVNGAGKTTTIGKLAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGERNEIPVVAQ 174

Query: 173 EIGSDAAALAYEAFKQAQAKKV 194
             G+DAA++ Y+A++ A+AK +
Sbjct: 175 ATGADAASVIYDAYESAKAKNI 196


>gi|300709660|ref|YP_003735474.1| signal recognition 54 kDa protein [Halalkalicoccus jeotgali B3]
 gi|299123343|gb|ADJ13682.1| signal recognition 54 kDa protein [Halalkalicoccus jeotgali B3]
          Length = 462

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 128/272 (47%), Gaps = 16/272 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWD 106
           E++  L+++D+ V++  ++ + + T+   ++        D V  ++++ L+ L    + +
Sbjct: 34  EIQRSLLQADVDVSLVMELSDSIKTRALEEEPPGGTTARDHVLRIVYEELVALVGD-STE 92

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
                  I++ G+ G GKTT   K++   S  GL+  +   DTFR  A DQ K   +R  
Sbjct: 93  LPLEEQTIMLAGLQGSGKTTTAAKMAWWFSKKGLRPAVIQTDTFRPGAYDQAKQMCERAE 152

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR--LHNNSIL-MAGIGKMIRVLK 223
            +F       D   +A    ++      DV I+DTAGR  L +  I  +  IG+ +    
Sbjct: 153 VEFYGDPDAEDPVEIARRGMEET--ADADVHIVDTAGRHALEDELIKEIEAIGEAVE--- 207

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P   L VLDA  GQ A  Q   F    G  G+ +TK+DGTA+GGG +  V    
Sbjct: 208 ------PDRSLLVLDAAIGQGAKEQARRFEESIGIQGVAITKLDGTAKGGGALTAVNETD 261

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + FLG GE ++D+E F    F + + G  D
Sbjct: 262 STIAFLGTGEEVDDIERFEPNGFISRLLGMGD 293


>gi|258653309|ref|YP_003202465.1| signal recognition particle protein [Nakamurella multipartita DSM
           44233]
 gi|258556534|gb|ACV79476.1| signal recognition particle protein [Nakamurella multipartita DSM
           44233]
          Length = 515

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L    T++    RL     D    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FETLSDRLSGVFTNLRGKGRLTPADVDRTCREIRVALLEADVALPVVRAFIARIKERANG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             VS      Q+++  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  VIVSAALNPAQQIIKIVNEELVAILGGETRRLTY-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +  +   G   +L A D  R  A+ QL+I  ++        E G+   D  A+A      
Sbjct: 121 ALWLKGQGHTPLLVASDLQRPNAVTQLQIVGEQAGVQVFAPEPGNGVGDPVAVARAGVAH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ +  D++I+DTAGRL  ++ +M       + +   D   P  +L VLDA  GQ+A+  
Sbjct: 181 AKVRLHDIVIVDTAGRLGVDADMMQ------QAVDIRDAVQPQEILFVLDAMVGQDAVTT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G+++TK+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGFNGVVLTKLDGDARGGAALSVRHVTGQPIMFASTGEKLADFDVFHPDRMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|288800175|ref|ZP_06405634.1| signal recognition particle protein [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288333423|gb|EFC71902.1| signal recognition particle protein [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 446

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 9/207 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT  GKL+  + +    K +L A D +R AAI+QL +  ++     
Sbjct: 99  PSIILMSGLQGSGKTTFTGKLANLLKTKQNKKPLLVACDVYRPAAIEQLMVVGEQIGVP- 157

Query: 170 VCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           V SEI   +   +A    ++A+AK  DV++IDTAGRL  +  +M  I K+   ++     
Sbjct: 158 VYSEIENKNVVEIAQHGIQEAKAKGYDVVLIDTAGRLAIDEEMMNEISKLKESVQ----- 212

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I      P+ F
Sbjct: 213 -PTETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKF 271

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE +  ++ F     +  I G  D
Sbjct: 272 VGTGEKMEAIDLFHPSRMADRILGMGD 298


>gi|308808356|ref|XP_003081488.1| signal recognition particle 54kDa subunit (ISS) [Ostreococcus
           tauri]
 gi|116059951|emb|CAL56010.1| signal recognition particle 54kDa subunit (ISS) [Ostreococcus
           tauri]
          Length = 559

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 22/220 (10%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +V++ VG+ G GKTT   K +   +  G K  L   DTFR+ A D            F  
Sbjct: 145 NVVMFVGLQGAGKTTTCTKFAHYYARKGFKAALVCADTFRAGAFDXXXXXXXVRPGPFGP 204

Query: 172 SEIGSD----------------AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            E   D                 A +A     + + +K+D++I+DT+GR      L   +
Sbjct: 205 VEPKRDQRPKIPVLRLVHPRAMPAKIARGWVARFEEEKMDLIIVDTSGRHRQEEALFEEM 264

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            ++  V        P   + V+D++ GQ+A  Q   F +     G+IMTK+DG A+GGG 
Sbjct: 265 REIANVTD------PTMTIFVMDSSIGQSAADQANAFASTVDVGGVIMTKLDGHAKGGGA 318

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I  V   K P+ F+G GE I ++EPF A  F + + G  D
Sbjct: 319 ISAVSETKAPILFIGTGEHIGEMEPFDANSFVSKLLGMGD 358


>gi|307214651|gb|EFN89594.1| Signal recognition particle receptor subunit alpha-like protein
           [Harpegnathos saltator]
          Length = 621

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 143/295 (48%), Gaps = 41/295 (13%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP- 98
           V ++L+D LI  ++   +AQK+ + + TK   K     D     V   +++ + ++L P 
Sbjct: 325 VLDKLKDHLITKNVAADIAQKLCDSVGTKLEGKVLGTFDNVANTVKATLTDALVQILSPK 384

Query: 99  -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                L        + RP+V+   GVNGVGK+T + K+   + +   +V++AA DTFR+ 
Sbjct: 385 RRIDILRDALEAKKTGRPYVMTFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAG 444

Query: 154 AIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           A++QL+      +A                    G DAA +A EA + A+    D++++D
Sbjct: 445 AVEQLRTHMRHLNALHPQEKHGNVPMVQLYEKGYGKDAAGIAMEAIRFAKDCLFDIVLVD 504

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259
           TAGR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ A+A  +
Sbjct: 505 TAGRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYS 558

Query: 260 ---------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                    G+++TK D    + G  I +      P+ F+G G+   DL+   AK
Sbjct: 559 QSVNPHIIDGIVLTKFDTIDDKVGAAITMTYITGQPIVFVGTGQTYTDLKSLNAK 613


>gi|242055585|ref|XP_002456938.1| hypothetical protein SORBIDRAFT_03g045950 [Sorghum bicolor]
 gi|241928913|gb|EES02058.1| hypothetical protein SORBIDRAFT_03g045950 [Sorghum bicolor]
          Length = 487

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 15/203 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V++ VG+ G GKTT   K +      G    L   DTFR+ A+DQL+  A +    F  S
Sbjct: 114 VVMFVGLQGSGKTTTCVKYADYHRRTGFSPALVCADTFRAGALDQLRQNAAKAGIPFYGS 173

Query: 173 EIGSDAAALAYE-------AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
              SD   +A E       A + A A+  D++++DT+GR    + L+  + ++    +  
Sbjct: 174 YTESDPVRVAVEGVDRFRNADQAAAAEGCDLIVVDTSGRHSQEAALLEEMRQLAEATR-- 231

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDGTAR-GGGLIPIVVTHK 283
               P  V+ V+DAT GQ A  Q   F  +V     +++TKMDG A+ GGG +  V   K
Sbjct: 232 ----PDLVVLVMDATIGQAAFDQALAFKQSVEVGAVIVVTKMDGHAKGGGGALSAVAATK 287

Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306
            PV F+G GE I DLE F A+ F
Sbjct: 288 SPVIFIGTGEHIADLEAFDARSF 310


>gi|94270962|ref|ZP_01291863.1| GTP-binding signal recognition particle SRP54, G-domain:Signal
           peptide binding (SRP54) M-domain [delta proteobacterium
           MLMS-1]
 gi|93450606|gb|EAT01727.1| GTP-binding signal recognition particle SRP54, G-domain:Signal
           peptide binding (SRP54) M-domain [delta proteobacterium
           MLMS-1]
          Length = 313

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 84/158 (53%), Gaps = 6/158 (3%)

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           IDQL + A+        S    D   +  +A  +A     D L+IDTAGRLH +  LM  
Sbjct: 1   IDQLTVLAESLQVPVYPSRSDQDPVTICRQALHRADEAGCDTLLIDTAGRLHVDETLMDE 60

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           +G++   L+      P  +L V DA TGQ+A+   E FH     +G+I+TK+DG ARGG 
Sbjct: 61  LGRLKEALQ------PAEILLVADAMTGQDAVTVAEKFHQDLDLSGVILTKLDGDARGGA 114

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            + I      P+ F+G+GEG++ LEPF     ++ I G
Sbjct: 115 ALSIRRATGRPLKFVGLGEGLDALEPFHPDRMASRILG 152


>gi|83313161|ref|YP_423425.1| Signal recognition particle GTPase [Magnetospirillum magneticum
           AMB-1]
 gi|82948002|dbj|BAE52866.1| Signal recognition particle GTPase [Magnetospirillum magneticum
           AMB-1]
          Length = 454

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 134/263 (50%), Gaps = 16/263 (6%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPL--SKPFNWDFSHRPHV 113
           VA  +V+E + +  A+ V  + V+  VS      +++H  L+    +K    + S  P V
Sbjct: 43  VALSVVKEFIGRVKARAVGAE-VIKSVSPGQMVVKIVHDELIATLGTKGTELNLSAVPPV 101

Query: 114 -ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            IL+VG+ G GKTT   K++ K+     KV+LA+ D +R AA  QL+I A +     +  
Sbjct: 102 VILMVGLQGSGKTTTSAKIALKLKKEKKKVLLASLDVYRPAAQQQLQILAGQAEVGSLPI 161

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
            +G    A++  A    + +  DV+I+DTAGRLH +  LMA +  +       D   P  
Sbjct: 162 VMGEMPVAISKRALDVGRKEGYDVVILDTAGRLHIDQELMAEVAAV------RDAAKPTE 215

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L V DA  GQ+A+     F+   G TG+++T++DG ARGG  + +      P+ FLG G
Sbjct: 216 TLLVTDAMVGQDAVTLAREFNEKVGVTGIVLTRIDGDARGGAALSMRAITGRPIKFLGAG 275

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E ++ LE F     +  I G  D
Sbjct: 276 EKLDALEVFHPDRIAGRILGMGD 298


>gi|256372274|ref|YP_003110098.1| signal recognition particle protein [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008858|gb|ACU54425.1| signal recognition particle protein [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 443

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 111/216 (51%), Gaps = 9/216 (4%)

Query: 101 KPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           +PF   + S  P VIL+ G+ GVGKTT   KL+      G   +L A D  R  AI+QL+
Sbjct: 89  EPFRLRYASTPPTVILLAGLQGVGKTTAAAKLALAQLREGRSPLLVAADLQRPGAIEQLR 148

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I  +R     V    G D   +A     +A+    DV+I+DTAGRL  +  LM  + +M 
Sbjct: 149 ILGERAGVAVVSD--GDDPVTVARHGVAEARRLGRDVVIVDTAGRLAIDEALMREV-QM- 204

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            V + +DPH  +  L V+DA  GQ ++R  + F      + +I+TK+DG ARGG  + + 
Sbjct: 205 -VSEAIDPH--YRFL-VVDAMVGQESVRVAQAFDERLSISAVILTKLDGDARGGAALSVR 260

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                P+ F  VGE + D EPF     ++ I G  D
Sbjct: 261 EVVGKPIAFASVGEKLEDFEPFYPDRMASRILGMGD 296


>gi|195174297|ref|XP_002027915.1| GL27063 [Drosophila persimilis]
 gi|194115604|gb|EDW37647.1| GL27063 [Drosophila persimilis]
          Length = 610

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 135/284 (47%), Gaps = 41/284 (14%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP------- 102
           D LI  ++   +A K+ + + T    K V +   V   V E + + L+ +  P       
Sbjct: 320 DHLISKNVASEIAVKLCDSVATSLEGKQVGTFDSVASLVKEALTQSLVRILSPKRRIDII 379

Query: 103 ---FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
                   S +P+ I+  GVNGVGK+T + K+   + +    V++AA DTFR+ A++QL+
Sbjct: 380 RDALESKRSGKPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLR 439

Query: 160 IWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
                           +RT         G DAA +A EA K A   KVDV+++DTAGR+ 
Sbjct: 440 THTRHLNALHPPANHNNRTMVQLYEKGYGKDAAGIAMEAIKFAHETKVDVVLVDTAGRMQ 499

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT------ 259
           +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ ++A  +      
Sbjct: 500 DNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPH 553

Query: 260 ---GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
              G+++TK D    + G  I +      P+ F+G G+   DL+
Sbjct: 554 IIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK 597


>gi|170094140|ref|XP_001878291.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646745|gb|EDR10990.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 664

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 140/297 (47%), Gaps = 49/297 (16%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVE---ELLTKR-------------YAKDVSVQRVLYD- 87
           V E ++  L++ ++ + +A K+ E   E L  R              A   S+ R+L   
Sbjct: 359 VLEGMKQHLMKKNVAMEIADKVCENVGENLVGRKVGGFQTTSAAVHLALSTSLTRILTPK 418

Query: 88  -VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             ++L+  +   LS P        P+ I  VGVNGVGK+T + K+   +   GL+V++AA
Sbjct: 419 TSTDLLLSIRNKLSSPLPSTQRRVPYSITFVGVNGVGKSTNLSKVCFWLIQNGLRVLIAA 478

Query: 147 GDTFRSAAIDQLKIWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            DTFRS A++QL++                ++  +      G DAA +A EA   AQ   
Sbjct: 479 CDTFRSGAVEQLRVHVRNLSMLGVDGATNSKSRVELFERGYGKDAAGIAREAIGYAQEND 538

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL------- 246
            DV++IDTAGR+ +N  LM  + K++ V      + P  ++ V +A  G  A+       
Sbjct: 539 FDVVLIDTAGRMQDNEPLMRALAKLVAV------NNPDKIIFVGEALVGNEAVDQLTKFD 592

Query: 247 RQVEMFHAVAGTT----GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           R +  F +V+G +    G+++TK D    + G  + +      P+ F+G G+   DL
Sbjct: 593 RALRDFSSVSGRSRGIDGMLVTKWDTVDDKVGAALSMTYVTGQPIIFVGCGQTYTDL 649


>gi|319899458|ref|YP_004159555.1| signal recognition particle protein [Bartonella clarridgeiae 73]
 gi|319403426|emb|CBI76994.1| signal recognition particle protein [Bartonella clarridgeiae 73]
          Length = 519

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 131/260 (50%), Gaps = 21/260 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM-----LMPLSKPFNWDFSHRPHVILV 116
           V +K V   + K       V ++++D  EL+H +     L  L+ P        P VI++
Sbjct: 55  VREKAVGAAIVKSIKPGQMVVKIVHD--ELVHMLGSESVLSDLNAPA-------PVVIML 105

Query: 117 VGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VG+ G GKTT   KL+K+++D    KV++A+ DT R AA +QL+    +   D +     
Sbjct: 106 VGLQGSGKTTTTAKLAKRLTDKHNKKVLMASLDTRRPAAQEQLRQLGKQVQIDSLPIIPD 165

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
             A  ++  A + A+    DV+++DTAGR H +  LM      + +++      P+ ++ 
Sbjct: 166 QSAVDISTRALQAARLGGYDVVLLDTAGRNHIDEALM------LELIEIKASSQPYEIML 219

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V D+ TGQ+A+     F+   G TG+I+T+M+   RGG  + +      P+  +G GE +
Sbjct: 220 VADSLTGQDAVNLARSFNERIGITGIILTRMESDGRGGAALSMRAVTGKPIKAIGTGEKM 279

Query: 296 NDLEPFVAKDFSAVITGCLD 315
           + LE F  +  +  I G  D
Sbjct: 280 DALEEFHPRRIADRILGMGD 299


>gi|290979105|ref|XP_002672275.1| predicted protein [Naegleria gruberi]
 gi|284085850|gb|EFC39531.1| predicted protein [Naegleria gruberi]
          Length = 484

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 137/277 (49%), Gaps = 17/277 (6%)

Query: 47  EELEDLLIRSDIG----VAVAQKIVEEL--LTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +E+   L+ +D+     V V   I EEL  +++   +  +++R+L    + + K+  P  
Sbjct: 33  KEISKALLEADVNCEQVVQVYNGIKEELDNMSQDVNRKKNIKRIL---KKELCKLFDPGV 89

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           K        + +VIL +G+ G GKTT   K +      G K  +   +TFR+ A D L+ 
Sbjct: 90  KAIK-PVKGKQNVILFIGLRGAGKTTTASKFAMFYKKKGFKCAIVNSNTFRTGAFDSLRH 148

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            + R +  F  +   +D   +A +  +  + +  D++I+DT+ R      L   + K+I 
Sbjct: 149 NSLRDTIPFYGNVFETDPIKIAKDGVETFKKENYDLIIVDTSARTIQEESLFEEM-KLIS 207

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTKMDGTARGGGLIPIV 279
                +   P+ ++ V+D+  GQ+   QV  F +   T G +I+TK+DG ++GGG +  +
Sbjct: 208 -----EAITPNDIILVMDSKIGQSIKEQVTTFKSRIPTLGSIILTKLDGHSKGGGALSAI 262

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
              K P+ F+G GE  + L+PF  + F + + G  +Y
Sbjct: 263 AATKTPISFIGTGEYYDSLQPFEVEGFVSRLLGEGNY 299


>gi|302874777|ref|YP_003843410.1| signal recognition particle protein [Clostridium cellulovorans
           743B]
 gi|307690607|ref|ZP_07633053.1| signal recognition particle protein [Clostridium cellulovorans
           743B]
 gi|302577634|gb|ADL51646.1| signal recognition particle protein [Clostridium cellulovorans
           743B]
          Length = 452

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 8/204 (3%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I++VG+ G GKTT+ GKL+  +     K +L A D +R AAI QL++   +        
Sbjct: 103 IIMLVGLQGAGKTTMAGKLALNLRKKNKKPLLVACDVYRPAAIKQLEVLGKQIDIPVFSM 162

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-APH 231
                   ++    K A+    +V+IIDTAGRL  +  LM         LK +     P 
Sbjct: 163 GDKISPVEISKAGIKHAKDNGNNVVIIDTAGRLQIDEELM-------EELKNIKADVTPD 215

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            +L V+D+ TGQ A+   + F       G+++TK+DG  +GG  + I      P+ F+G+
Sbjct: 216 EILLVVDSMTGQEAVNVAKTFDETLDIDGVVLTKLDGDTKGGAALSIKALTGKPIKFVGL 275

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE +NDLE F     ++ I G  D
Sbjct: 276 GEKVNDLEVFHPDRMASRILGMGD 299


>gi|326776310|ref|ZP_08235575.1| signal recognition particle protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656643|gb|EGE41489.1| signal recognition particle protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 516

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 132/267 (49%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIANVKERARGVEVSQALNPAQQVVKIVNEELVAILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P VI++ G+ G GKTT+ GKL   +   G   +L A D  R  A++Q
Sbjct: 88  GETRRLRFAKTA-PTVIMLAGLQGAGKTTLAGKLGLWLKGQGHSPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+AK  D++I+DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEFAKAKVHDIVIVDTAGRLGIDQELMRQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I       + F   GE + D + F
Sbjct: 261 ALSIAHVTGKQIMFASNGEKLEDFDAF 287


>gi|302419337|ref|XP_003007499.1| signal recognition particle receptor subunit alpha [Verticillium
           albo-atrum VaMs.102]
 gi|261353150|gb|EEY15578.1| signal recognition particle receptor subunit alpha [Verticillium
           albo-atrum VaMs.102]
          Length = 636

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 140/284 (49%), Gaps = 37/284 (13%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSEL-IHKMLM 97
           RL +GV +EL        +GV       E + T+ + A + S+ ++L   S L + + + 
Sbjct: 361 RLCEGVEKEL--------LGVKTGN--FESINTRIQSAMEASLTKMLTPTSSLDLLREID 410

Query: 98  PLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            +++P      S RP+V+ +VGVNGVGK+T + K+   +     +V++AAGDTFRS A++
Sbjct: 411 AITRPSAVSLRSARPYVMSIVGVNGVGKSTNLSKICFFLLQNKYRVLIAAGDTFRSGAVE 470

Query: 157 QLKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
           QL +   R   +    E           G DAA +A +A   A A+  DV++IDTAGR H
Sbjct: 471 QLAVHV-RNLTELTAREGGKVELYQKGYGKDAAQVARDAVAHAAAEGFDVVLIDTAGRRH 529

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQV----LDATTGQNALRQVEMFHAVAGTTGLI 262
           N+  LM+ + K     K      P  +L V    L  T           F A  G  G I
Sbjct: 530 NDQRLMSSLEKFANFAK------PDKILMVGEPSLAPTRSPRPATSTPPFGAARGLDGFI 583

Query: 263 MTKMD--GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           ++K D  GT   G L+ +V    +PV F+GVG+  +DL  F  K
Sbjct: 584 ISKCDTVGTMV-GTLVSLVHATNVPVLFVGVGQHYSDLRNFSVK 626


>gi|182435685|ref|YP_001823404.1| putative signal recognition particle protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178464201|dbj|BAG18721.1| putative signal recognition particle protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 516

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 132/267 (49%), Gaps = 15/267 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIANVKERARGVEVSQALNPAQQVVKIVNEELVAILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P VI++ G+ G GKTT+ GKL   +   G   +L A D  R  A++Q
Sbjct: 88  GETRRLRFAKTA-PTVIMLAGLQGAGKTTLAGKLGLWLKGQGHSPLLVACDLQRPNAVNQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+AK  D++I+DTAGRL  +  LM  
Sbjct: 147 LSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEFAKAKVHDIVIVDTAGRLGIDQELMRQ 206

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
               IR     D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 207 AAD-IR-----DAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + I       + F   GE + D + F
Sbjct: 261 ALSIAHVTGKQIMFASNGEKLEDFDAF 287


>gi|242038763|ref|XP_002466776.1| hypothetical protein SORBIDRAFT_01g014030 [Sorghum bicolor]
 gi|241920630|gb|EER93774.1| hypothetical protein SORBIDRAFT_01g014030 [Sorghum bicolor]
          Length = 476

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 139/283 (49%), Gaps = 21/283 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYD--V 88
           ++  + LDD +  E+   L+++D+     +++   + +    +  A   + +RV++   V
Sbjct: 22  LVDQKVLDDCL-NEISRALLQADVRFETVRRVQATIKSTVNLQALADGTNKRRVIHRAVV 80

Query: 89  SELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAA 146
           +EL  + L P    F      +P  V++ VG+ G GKTT   K +       GL   L  
Sbjct: 81  AEL-RRTLDPGKPSFAPTKGRKPASVVMFVGLQGSGKTTTCVKYADYHRRHKGLSPALVC 139

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA---FKQAQAKKVDVLIIDTAG 203
            DTFR+ A DQLK  A +    F  S   SD   +A E    F+   A   D++++DT+G
Sbjct: 140 ADTFRAGAFDQLKQNATKAGIPFYGSHTESDPVKVAVEGVDRFRDEDA--CDLIVVDTSG 197

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R    + L+  + ++       D   P  V+ V+DA+ GQ A +Q + F        +I+
Sbjct: 198 RHRQEAALLEEMRQVA------DATRPDLVVFVMDASIGQAAFQQAQAFRQSTPVGAVIV 251

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TKMDG A+GGG +  V   K PV F+G GE I DLE F AK F
Sbjct: 252 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHIPDLEAFDAKSF 294


>gi|221132103|ref|XP_002161830.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 644

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 146/291 (50%), Gaps = 48/291 (16%)

Query: 33  TDIISSRRLDDGVREELEDLLIRSDIGVAVA-QKIVEELLTKRYAKDVSVQRVLYDVSEL 91
           TDI  S +L + V  +LE  ++ +  GVA A +  +EE L +  +    +  +L DV E 
Sbjct: 364 TDI--SEKLCNSVAAKLEGKVLGTFTGVATAVRSSMEESLVQILSPKKRID-ILRDVMES 420

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             K L              P+VI+  GVNGVGK+T + K+   + +   +VM+AA DTFR
Sbjct: 421 KKKGL--------------PYVIVFCGVNGVGKSTNLAKICFWLLENNHRVMIAACDTFR 466

Query: 152 SAAIDQLKIWADRTSA------------DFVCSE-IGSDAAALAYEAFKQAQAKKVDVLI 198
           S A++QL+    R  A             F+  +  G DAAA++ EA   A+  K DV++
Sbjct: 467 SGAVEQLRTHTCRLKALHPKASPSAPEQVFLYDKGYGKDAAAVSMEAINLAKDLKCDVVL 526

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAG 257
           +DTAGR+ +N  LM  + K+I++      + P+ VL V +A  G + + Q+  F+ A+A 
Sbjct: 527 VDTAGRMQDNEPLMRSLAKLIKI------NEPNLVLFVGEALVGNDGVDQLRKFNQALAD 580

Query: 258 TT---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            +         G+++TK D    + G  I +      P+ F+G G+   DL
Sbjct: 581 HSDVNNPHLIDGIVLTKFDTIDDKVGASISMTYETGQPIVFVGTGQTYTDL 631


>gi|294659968|ref|XP_462420.2| DEHA2G20196p [Debaryomyces hansenii CBS767]
 gi|199434369|emb|CAG90930.2| DEHA2G20196p [Debaryomyces hansenii]
          Length = 545

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 140/287 (48%), Gaps = 31/287 (10%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP-LS 100
           D V ++  D LI  +I    A+ I++++  K   K  V++      + E + K+L P +S
Sbjct: 257 DEVSKKFLDQLITKNIAPPTAKIILDKIKNKLGNKQGVTIAMYKQTMVEELTKILTPNVS 316

Query: 101 KPFNWDFSHR-----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
               ++   R     P+VI VVGVNGVGK+T + KL+       L V++ A DTFRS A+
Sbjct: 317 TDLLYEIKDRSSSGKPYVISVVGVNGVGKSTNLAKLAYWFLQNNLNVLICACDTFRSGAV 376

Query: 156 DQLKIWADR----TSADFVCSEI---------GSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QLK+  +      ++    S+I         G    A A  A + A  +  D+++IDTA
Sbjct: 377 EQLKVHVNNLQKLNNSSSSESKIDIFEKGYGGGDHVVATAKSAIQHASTEHYDIVLIDTA 436

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-- 260
           GR H+N+ LM  + K        D   P  ++ V +A  G +++ Q   F+   G     
Sbjct: 437 GRTHSNAKLMTPLKKF------GDAANPDKIIMVGEALVGTDSVEQAINFNNAFGNRRNL 490

Query: 261 --LIMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
              I++K+D      G +I +V+  K+P+ F+G G+   D++    K
Sbjct: 491 DFFIISKIDTVGDLVGTMINMVMATKVPILFVGTGQTYTDIKRLSVK 537


>gi|303233299|ref|ZP_07319970.1| signal recognition particle protein [Atopobium vaginae PB189-T1-4]
 gi|302480599|gb|EFL43688.1| signal recognition particle protein [Atopobium vaginae PB189-T1-4]
          Length = 484

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S S +L++  + +     L +        E+   L+ +D+   V ++ V     K   
Sbjct: 2   FSSLSDRLQQTFSQLRGKATLTEQDIAAAMREIRMALLEADVNYRVVKEFVATCKEKCST 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + + ++L   S          P+VI++VG+ G GKTT   KL
Sbjct: 62  AEVLSSLTPAQNVVKVVLDELTRLLGSTSSGLVLSSGRTPNVIMLVGLQGSGKTTATAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   ++AA DT R AA DQL+  A      F  ++  + A  +A  A + A  
Sbjct: 122 AYLLKQQGRAPLVAACDTHRPAAADQLQTLAREIGVGFYRAD-NTPAQDVAAGAIQDAVD 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  D++IIDTAGR   +  +M     + + +K      P  +L V+DA  GQ+ +  V+ 
Sbjct: 181 KLKDIVIIDTAGRTQLDEEMMLEAIAIKQAVK------PDQILMVVDAMAGQDIVNVVKE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A     G+I++K+DG ARGGG + +      P+ F+ +GE  + LE F     +  I 
Sbjct: 235 FSARLDFDGVIISKLDGDARGGGALSVREVTGKPIKFVSMGEKPSSLEVFHPDRMAKRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|289622052|emb|CBI51230.1| unnamed protein product [Sordaria macrospora]
          Length = 676

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 152/300 (50%), Gaps = 41/300 (13%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVS--ELIHKML 96
           RL +GV +EL        IGV       E + T+ + A +VS+ ++L   S  +L+ ++ 
Sbjct: 382 RLCEGVEKEL--------IGVKTGS--FESINTRIQKAMEVSLTKMLTPTSSLDLLREID 431

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              S P       RP+V+ +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++
Sbjct: 432 SITSPPATSLRKARPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVE 491

Query: 157 QLKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
           QL +   R   +    E           G DAAA+A +A   A  +  DV++IDTAGR H
Sbjct: 492 QLAVHV-RNLKELTQREGGKVELYQKGYGKDAAAVAKDAVTFAAQEGFDVVLIDTAGRRH 550

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262
           N+  LM+ + K  +  +      P  +L V +A  G +++ Q + F+A  G      G I
Sbjct: 551 NDQRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQAKNFNASFGAGRSLDGFI 604

Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321
           ++K D      G ++ IV    +PV F+GVG+  +DL  F      +V  G  +  E++I
Sbjct: 605 ISKCDTVGDMVGTIVSIVHATNVPVLFVGVGQHYSDLRNF------SVPVGSREAAEQRI 658


>gi|254821185|ref|ZP_05226186.1| hypothetical protein MintA_14707 [Mycobacterium intracellulare ATCC
           13950]
          Length = 139

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 83/138 (60%), Gaps = 2/138 (1%)

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D A++A++A  +  A  VDV++IDTAGRLH    LM  + K+ RV+ R    A   VL
Sbjct: 4   GADPASVAFDAVDKGIAAGVDVVLIDTAGRLHTKVGLMDELDKVKRVVTRR--AAVDEVL 61

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDAT GQN L Q  +F  V   TG ++TK+DGTA+GG +  +     +PV  +G+GEG
Sbjct: 62  LVLDATIGQNGLAQARVFAEVVEITGAVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEG 121

Query: 295 INDLEPFVAKDFSAVITG 312
            +DL PF    F   + G
Sbjct: 122 PDDLAPFEPAAFVDALLG 139


>gi|196016166|ref|XP_002117937.1| hypothetical protein TRIADDRAFT_33282 [Trichoplax adhaerens]
 gi|190579510|gb|EDV19604.1| hypothetical protein TRIADDRAFT_33282 [Trichoplax adhaerens]
          Length = 614

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 154/323 (47%), Gaps = 54/323 (16%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LS+ + LT       +  KEG+  I+          E++++ LI  ++   +A ++   +
Sbjct: 298 LSFFKTLT----GQKIITKEGMVPIL----------EKMKEHLIAKNVAADIADQLCSSV 343

Query: 71  LTKRYAKDVSV-----QRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGV 119
            TK   K +         V   ++E + ++L P      L          +P+ I   GV
Sbjct: 344 STKLEGKVIGTFGGITSEVKKTLAESLTQLLSPRRQIDILRDCMEAKRRQKPYSITFCGV 403

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA------DFVCSE 173
           NGVGK+T + K+   + + G +V++AA DTFR+ A++QL+      +A      D   S 
Sbjct: 404 NGVGKSTNLAKICFWLMENGYRVLIAACDTFRAGAVEQLRTHVRHLNALHPAEGDEEPSV 463

Query: 174 I------GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           I      G DAA +A +A   AQ + +DV++IDTAGR+ +N  LM  + K++ +      
Sbjct: 464 ILFEKGYGKDAAGIAMDAINFAQDRIIDVVLIDTAGRMQDNEPLMRSLAKLVHI------ 517

Query: 228 HAPHSVLQVLDATTGQNALRQVEMF-HAVAGTT---------GLIMTKMDGT-ARGGGLI 276
           + P  VL V +A  G  A+ Q++ F HA+   +         G+++TK D    + G  I
Sbjct: 518 NEPDLVLFVGEALVGNEAVDQLKKFNHAMMDFSKSDNPRLIDGILLTKFDTIDDKVGAAI 577

Query: 277 PIVVTHKIPVYFLGVGEGINDLE 299
            +  T   P+ F+G G+   DL+
Sbjct: 578 SMTYTAGQPIVFVGTGQTYADLK 600


>gi|301117886|ref|XP_002906671.1| signal recognition particle receptor subunit alpha [Phytophthora
           infestans T30-4]
 gi|262108020|gb|EEY66072.1| signal recognition particle receptor subunit alpha [Phytophthora
           infestans T30-4]
          Length = 549

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 132/283 (46%), Gaps = 35/283 (12%)

Query: 46  REELE-------DLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLM 97
           RE+LE        +LI  ++   VA ++ E ++T    + + S  R+   V + +   L+
Sbjct: 260 REDLEPVITPMHQMLISKNVASEVADELCESVITTVVGQRLESFTRISTVVRKALEAALL 319

Query: 98  PLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
            +  P                 R + I+ VGVNGVGK+T + K+   +   G+ VM+AA 
Sbjct: 320 RILTPKKSTDVLREILQAKSEGRAYSIVFVGVNGVGKSTSLSKVCYYLKSKGVNVMIAAC 379

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFRS A++QL   A     +        D A++A EA K       D ++IDTAGR+ N
Sbjct: 380 DTFRSGAVEQLNQHAKVLDVELFQKGYAKDPASVAKEAIKYGTENGYDCVLIDTAGRMQN 439

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTT------- 259
           N  LM  + K++        + P  VL V +A  G + + Q+ MF  A+A  +       
Sbjct: 440 NEPLMRALAKLV------SNNEPDLVLFVGEALVGNDGIDQLSMFDRALADYSDRREPHR 493

Query: 260 --GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             G+++TK D    + G  + +V     P+ F+G G+    L+
Sbjct: 494 IDGIVVTKFDTIDDKVGAAVSMVYKTGQPIMFVGTGQKYTHLK 536


>gi|194889839|ref|XP_001977167.1| GG18880 [Drosophila erecta]
 gi|190648816|gb|EDV46094.1| GG18880 [Drosophila erecta]
          Length = 615

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 137/288 (47%), Gaps = 41/288 (14%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102
           +++ D LI  ++   +A K+ + + T    K + +   +   V E + + L+ +  P   
Sbjct: 321 DKMRDHLISKNVATEIAAKLCDSVATSLDGKQMGTFDSIASQVKEALTQSLVRILSPKRR 380

Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                       + RP+ I+  GVNGVGK+T + K+   + +    V++AA DTFR+ A+
Sbjct: 381 IDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 440

Query: 156 DQLKIWAD-------------RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QL+                 RT         G DAA +A EA K A   +VDV+++DTA
Sbjct: 441 EQLRTHTRHLNALHPAAKHDGRTMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTA 500

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259
           GR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ ++A  +  
Sbjct: 501 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 554

Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
                  G+++TK D    + G  I +      P+ F+G G+   DL+
Sbjct: 555 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK 602


>gi|311744098|ref|ZP_07717904.1| signal recognition particle protein [Aeromicrobium marinum DSM
           15272]
 gi|311313228|gb|EFQ83139.1| signal recognition particle protein [Aeromicrobium marinum DSM
           15272]
          Length = 511

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 19/293 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L+    ++    RL     D    E+   L+ +D+ V+V +  V  +  +   
Sbjct: 2   FDSLQDRLQSAFKNLRGKGRLTEADIDATAREIRLALLEADVSVSVVRDFVATVKERSAG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSRALNPGQQVVKIVNEELIGILGGETRRIRF-AKNGPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              + + G   ML A D  R  A+ QL++   +        E G+   D   +A  A ++
Sbjct: 121 GLWLKEQGKSPMLVAADLQRPNAVTQLQVVGQQAGVTVFAPEPGNGTGDPVQVARRAMEE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGRL  ++ LM     +   +       P  VL V+DA  GQ+A++ 
Sbjct: 181 ARRTLHDVVVVDTAGRLGIDAELMRQAADIRAAVD------PDEVLFVIDAMIGQDAVQT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            + F      TG+++TK+DG ARGG  + +      P+ F   GE + D + F
Sbjct: 235 AQAFADGVDFTGVVLTKLDGDARGGAALSVRQVTGRPIMFASTGEKLTDFDVF 287


>gi|117928770|ref|YP_873321.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidothermus
           cellulolyticus 11B]
 gi|117649233|gb|ABK53335.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidothermus
           cellulolyticus 11B]
          Length = 551

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 137/281 (48%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +  + ++S      Q+V+  V+E + ++L 
Sbjct: 28  DATLREIRLALLEADVALPVVRDFLSGVRERARSAELSRALNPAQQVISIVNEELIRILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +   + P VIL+ G+ G GKTTV  KL + ++  G   +L A D  R  A++Q
Sbjct: 88  GQARRLRF-AKNPPSVILLAGLQGSGKTTVAAKLGRWLAKQGHTPVLVAADLQRPNAVEQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L++   R        E GS   D   +A    + A+ +  D+++IDTAGRL  +  +M  
Sbjct: 147 LQVLGARAEVPVFAPEPGSGVGDPVDVARRGVEFARRRLHDIVVIDTAGRLGVDEDMMR- 205

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
                + ++  D   P  +L V+DA  GQ+A+     F    G  G+I+TK+DG ARGG 
Sbjct: 206 -----QAMEIRDATEPDEILFVVDAMVGQDAVTTARAFLDGVGFDGVILTKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +       + F   GE ++D + F  +  ++ I G  D
Sbjct: 261 ALSVASVTGKQILFASTGEKLDDFDVFHPERMASRILGMGD 301


>gi|91974990|ref|YP_567649.1| signal recognition particle protein [Rhodopseudomonas palustris
           BisB5]
 gi|91681446|gb|ABE37748.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Rhodopseudomonas palustris BisB5]
          Length = 517

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 136/279 (48%), Gaps = 13/279 (4%)

Query: 43  DGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V     +K+ E+ +     K V   Q V+  V++ +  ML 
Sbjct: 28  DAAMREIRRALLEADVALEVVRSFTEKVREQAVGATVVKSVKPGQMVVKIVNDELIAMLG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAID 156
             S+  + + +  P  I++VG+ G GKTT   KL+++M+     KV++A+ D +R AA++
Sbjct: 88  SDSQAIDLN-AVAPVPIMMVGLQGSGKTTTTAKLARRMTQRDKRKVLMASLDVYRPAAME 146

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL +       D +   +G     +A  A +  +    DV+++DTAGR   +  +M+   
Sbjct: 147 QLAVLGRDLEIDTLPIVVGQKPQDIARRAMEAGRLGGYDVVLLDTAGRTTLDEDMMSEAA 206

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           ++           PH VL V D+ TGQ+A+     F    G TG+++T++DG  RGG  +
Sbjct: 207 EIKAAAN------PHEVLLVADSLTGQDAVNLARAFDERVGLTGIVLTRIDGDGRGGAAL 260

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +      P+  +G GE  + LE F     +  I G  D
Sbjct: 261 SMRAVTGKPIKLMGTGEKTDALEDFHPSRIAGRILGMGD 299


>gi|330802872|ref|XP_003289436.1| signal recognition particle 54 kDa subunit [Dictyostelium
           purpureum]
 gi|325080478|gb|EGC34032.1| signal recognition particle 54 kDa subunit [Dictyostelium
           purpureum]
          Length = 516

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 138/277 (49%), Gaps = 18/277 (6%)

Query: 47  EELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKM--LMP 98
           +E+ + L +SD+ +++     + I E++   + A  ++ ++++  V   ELI  +   +P
Sbjct: 33  KEIGNALSKSDVSMSLIIQMRKNIKEKVKLDQIAAGLNKRKIIRKVVFEELIRLVDPGVP 92

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           L KP       + +V++ VG+ G GKTT + KL+      G    +   DTFR+ A DQ+
Sbjct: 93  LWKPV----KGKSNVVMFVGLQGAGKTTSVTKLAYYYKKKGWSTAIVCADTFRAGAFDQV 148

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +  A +    +  S+   D   +A       + +  +++I+DT+GR   +S L   + ++
Sbjct: 149 RHNAAKGKIQYYGSDTEKDPVVVAKAGVDIFKKEGTEIIIVDTSGRHKQDSELFEEMKQI 208

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
              +K      P +V+ V+D++ GQ A  Q   F        +I+TKMDG ++GGG +  
Sbjct: 209 ETAVK------PDNVIFVMDSSIGQAAYEQATAFKNSVKVGSIIITKMDGNSKGGGALSG 262

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +     P+ F+G GE + DL+ F  + F   + G  D
Sbjct: 263 IAATGSPIIFIGTGEHLTDLDLFDPETFVNKLLGNGD 299


>gi|164428471|ref|XP_001728457.1| hypothetical protein NCU11187 [Neurospora crassa OR74A]
 gi|157072159|gb|EDO65366.1| hypothetical protein NCU11187 [Neurospora crassa OR74A]
          Length = 659

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 35/283 (12%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVS--ELIHKML 96
           RL +GV +EL        IGV       E + T+ + A +VS+ ++L   S  +L+ ++ 
Sbjct: 384 RLCEGVEKEL--------IGVKTGS--FESINTRIQKAMEVSLTKMLTPTSSLDLLREID 433

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              S P       RP+V+ +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++
Sbjct: 434 SITSPPATSLRKARPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVE 493

Query: 157 QLKIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
           QL +   R   +    E           G DAAA+A +A   A  +  DV++IDTAGR H
Sbjct: 494 QLAVHV-RNLKELTQREGGKVELYQKGYGKDAAAVAKDAVAFAAQEGFDVVLIDTAGRRH 552

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262
           N+  LM+ + K  +  +      P  +L V +A  G +++ Q + F+A  G      G I
Sbjct: 553 NDQRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQAKNFNASFGAGRSLDGFI 606

Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           ++K D      G ++ IV    +PV F+GVG+  +DL  F  K
Sbjct: 607 ISKCDTVGDMVGTIVSIVHATNVPVLFVGVGQHYSDLRNFSVK 649


>gi|148377845|ref|YP_001256721.1| Signal recognition particle protein [Mycoplasma agalactiae PG2]
 gi|148291891|emb|CAL59282.1| Signal Recognition Particle Protein [Mycoplasma agalactiae PG2]
          Length = 452

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 134/283 (47%), Gaps = 23/283 (8%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRY---------AKDVSVQRVLYDVSELIHK 94
           GV  +++  L+ +D+ + V +  V  +  K           A+   ++ V  ++ +++ K
Sbjct: 29  GVTRDIKMALLEADVNLKVVKDFVANVKEKALSANLVGTLNAEQTMIKIVHNELVDILGK 88

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRS 152
            + P+      + + +P++I++ G+ G GKTT   K++   K  +   K +L A D +R 
Sbjct: 89  EVRPI------EITKKPYIIMMTGLQGSGKTTACAKIAYFLKKKNQIEKPLLVAADIYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA+ QL   A     D+        A  +  +A   A+  K D++IIDTAGRL  +  LM
Sbjct: 143 AAVQQLVTLAKGIQVDYFEKGTNFSAQEIVKDALVFAKENKNDLIIIDTAGRLSIDEPLM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + ++  +        P  V  V DA +GQ+ +     F+     TG ++TK+D  ARG
Sbjct: 203 NELWELKNI------SEPQEVFFVADALSGQDIINVASTFNDRLKLTGSVITKLDSDARG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  +       +P+ F+G GE I++L+ F     +  I G  D
Sbjct: 257 GAALSFSKVLSLPIRFIGTGEKISNLDLFYPDRMADRILGMGD 299


>gi|23014875|ref|ZP_00054671.1| COG0541: Signal recognition particle GTPase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 454

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VIL+VG+ G GKTT   K++ K+     KV+LA+ D +R AA  QL+I A +     +
Sbjct: 100 PVVILMVGLQGSGKTTTSAKIALKLKKEKKKVLLASLDVYRPAAQQQLQILAGQAEVGSL 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
              +G    A++  A    + +  DV+I+DTAGRLH +  LMA +  +       D   P
Sbjct: 160 PIVMGEMPVAISKRALDVGRKEGYDVVILDTAGRLHIDQELMAEVAAV------RDAAKP 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L V DA  GQ+A+     F+   G TG+++T++DG ARGG  + +      P+ FLG
Sbjct: 214 TETLLVTDAMVGQDAVTLAREFNEKVGVTGIVLTRIDGDARGGAALSMRAITGRPIKFLG 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE ++ LE F     +  I G  D
Sbjct: 274 AGEKLDALEVFHPDRIAGRILGMGD 298


>gi|296471767|gb|DAA13882.1| signal recognition particle receptor subunit alpha [Bos taurus]
          Length = 597

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 138/285 (48%), Gaps = 41/285 (14%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           TKG       + +G+    S  R D + V +++ D LI  ++   +A ++ E +  K   
Sbjct: 314 TKGTLGGMFGMLKGLVGSKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 373

Query: 77  KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125
           K + +   V   V + + + L+ + +P           +     RP+V+   GVNGVGK+
Sbjct: 374 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKS 433

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172
           T + K+S  + + G  V++AA DTFR+ A++QL+    R SA                  
Sbjct: 434 TNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEK 493

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  
Sbjct: 494 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 547

Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMD 267
           VL V +A  G  A+ Q+  F      H++A T     G+++TK D
Sbjct: 548 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFD 592


>gi|312382726|gb|EFR28083.1| hypothetical protein AND_04404 [Anopheles darlingi]
          Length = 668

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 134/289 (46%), Gaps = 37/289 (12%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP--- 98
           ++L D LI  ++   +AQ++ E +  K   +     D     V   ++E + ++L P   
Sbjct: 346 DKLRDHLIAKNVATDIAQQLCESVAVKLEGRVIGTFDTIAATVKTTLTEALVQILSPKRR 405

Query: 99  ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              L        + RP V+   GVNGVGK+T + K+   + +  L V++AA DTFR+ A+
Sbjct: 406 IDILRDCLEAKRAGRPFVMSFCGVNGVGKSTNLAKICFWLIENNLSVLIAACDTFRAGAV 465

Query: 156 DQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QL+                 R+         G DAA +A EA + A    +D+++IDTA
Sbjct: 466 EQLRTHMRHLNALHPPERHGGRSMVQLYEKGYGKDAAGIAMEAIRHAHDSGIDLVLIDTA 525

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT---- 258
           GR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+      +      
Sbjct: 526 GRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVNLADYSSRDRPH 579

Query: 259 --TGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
              G+++TK D    + G  I +      P+ F+G G+   DL+   AK
Sbjct: 580 IIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNAK 628


>gi|291320541|ref|YP_003515805.1| signal recognition particle protein [Mycoplasma agalactiae]
 gi|290752876|emb|CBH40851.1| Signal Recognition Particle Protein [Mycoplasma agalactiae]
          Length = 452

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 135/283 (47%), Gaps = 23/283 (8%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRY---------AKDVSVQRVLYDVSELIHK 94
           GV  +++  L+ +D+ + V +  V  +  K           A+   ++ V  ++ +++ K
Sbjct: 29  GVTRDIKMALLEADVNLKVVKDFVANVKEKALSANLVGTLNAEQTMIKIVHNELVDILGK 88

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRS 152
            + P+      + + +P++I++ G+ G GKTT   K++   K  +   K +L A D +R 
Sbjct: 89  EVRPI------EITKKPYIIMMTGLQGSGKTTACAKIAYFLKKKNQIEKPLLVAADIYRP 142

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA+ QL   A     D+        A  +  +A   A+  K D++IIDTAGRL  +  LM
Sbjct: 143 AAVQQLVTLAKGIQVDYFEKGTNFSAQEIVKDALVFAKENKNDLIIIDTAGRLSIDEPLM 202

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + ++  +        P  +  V DA +GQ+ +     F+     TG ++TK+D  ARG
Sbjct: 203 NELWELKNI------SEPQEIFFVADALSGQDIINVASAFNDRLKLTGSVITKLDSDARG 256

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +     +P+ F+G GE I++L+ F     +  I G  D
Sbjct: 257 GAALSLSKVLSLPIRFIGTGEKISNLDLFYPDRMADRILGMGD 299


>gi|195399363|ref|XP_002058290.1| GJ16008 [Drosophila virilis]
 gi|194150714|gb|EDW66398.1| GJ16008 [Drosophila virilis]
          Length = 633

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 145/303 (47%), Gaps = 44/303 (14%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102
           E++ D LI  ++   +A K+ + + T    K + +   +   V E + + L+ +  P   
Sbjct: 339 EKMRDHLISKNVASEIAAKLCDSVATSLEGKQMGTFDSIANMVKEALTQSLVRILSPKRR 398

Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                       + +P+ I+  GVNGVGK+T + K+   + +    V++AA DTFR+ A+
Sbjct: 399 IDIIRDALESKRNGKPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 458

Query: 156 DQLKIWAD-------------RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QL+                 RT         G DAA +A EA K A   +VDV+++DTA
Sbjct: 459 EQLRTHTRHLNALHPAAKHNGRTMVQLYEKGYGKDAAGIAMEAIKYAHDTRVDVVLVDTA 518

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259
           GR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ ++A  +  
Sbjct: 519 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 572

Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                  G+++TK D    + G  I +      P+ F+G G+   DL+   A + +AV++
Sbjct: 573 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK---AINVNAVVS 629

Query: 312 GCL 314
             +
Sbjct: 630 SLM 632


>gi|15618039|ref|NP_224323.1| Signal recognition particle GTPase [Chlamydophila pneumoniae
           CWL029]
 gi|4376378|gb|AAD18268.1| Signal Recognition Particle GTPase [Chlamydophila pneumoniae
           CWL029]
          Length = 448

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 149/309 (48%), Gaps = 30/309 (9%)

Query: 23  STSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLTKR 74
           S S KL    + ++SSRR+ ++ + E + ++   L+ +D+   V +    K+ E++L + 
Sbjct: 4   SLSQKLSSIFSFLVSSRRINEENISESIREVRLALLDADVNYHVVKDFISKVKEKILGEE 63

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS--HRPHVILVVGVNGVGKTTVIGKLS 132
             K VS  +        +H+ L+        +F+    P +IL+ G+ G GKTT   KL+
Sbjct: 64  IWKHVSPGQQFI---RCLHEELVAFLSDGREEFTIQKTPSIILLCGLQGAGKTTTAAKLA 120

Query: 133 KKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE----IGSDAAALAYEAF 186
             +  +    KV++   D  R AA+DQLKI   +T A+F  S+    I     ALAY   
Sbjct: 121 DYVIKNKKAKKVLVVPCDLKRFAAVDQLKILVAQTKAEFYQSQENKPINVVVKALAY--- 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+    D +I+DTAGRL+ ++ LM  +  + +V         +  L V++   GQ+ L
Sbjct: 178 --AKENGHDFVILDTAGRLNIDNELMEELTAIQKV------SQANERLFVMNVAMGQDVL 229

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             V+ F      TG+I++  DG AR G +  I      P+ F G GE I DL  F  +  
Sbjct: 230 ATVQAFDQSLDLTGVILSMTDGDARAGAVFSIKHVLGKPIKFEGCGERIQDLRSFDPQSM 289

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 290 AERILGMGD 298


>gi|297464866|ref|XP_002703534.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           [Bos taurus]
          Length = 618

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 138/285 (48%), Gaps = 41/285 (14%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           TKG       + +G+    S  R D + V +++ D LI  ++   +A ++ E +  K   
Sbjct: 314 TKGTLGGMFGMLKGLVGSKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG 373

Query: 77  KDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKT 125
           K + +   V   V + + + L+ + +P           +     RP+V+   GVNGVGK+
Sbjct: 374 KVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKS 433

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCS 172
           T + K+S  + + G  V++AA DTFR+ A++QL+    R SA                  
Sbjct: 434 TNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEK 493

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  
Sbjct: 494 GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDL 547

Query: 233 VLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTKMD 267
           VL V +A  G  A+ Q+  F      H++A T     G+++TK D
Sbjct: 548 VLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFD 592


>gi|302835766|ref|XP_002949444.1| hypothetical protein VOLCADRAFT_74239 [Volvox carteri f.
           nagariensis]
 gi|300265271|gb|EFJ49463.1| hypothetical protein VOLCADRAFT_74239 [Volvox carteri f.
           nagariensis]
          Length = 642

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 42/231 (18%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+VI+  GVNGVGK+T + K++  +   G+KVM+AA DTFR+ A++QLK    R     
Sbjct: 410 KPYVIVFCGVNGVGKSTNLAKIAYWLGGHGIKVMIAACDTFRAGAVEQLKTHCARLRVPL 469

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D A +AYEA +QA+     V+++DTAGR+ +N  LM  +  +I V      + 
Sbjct: 470 YERGYEKDPAKVAYEAIRQAERDGQHVVLVDTAGRMQDNQPLMRALSNLIAV------NN 523

Query: 230 PHSVLQVLDATTGQNALRQVEMFH-------------------AVAGT------------ 258
           P+ VL V +A  G +A+ Q+  F+                    V+G             
Sbjct: 524 PNLVLFVGEALVGNDAVDQLTKFNKALSDLAPTAAAAAASGATGVSGRGNDDGSALTRRH 583

Query: 259 ----TGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                G+++TK D    + G  + +V T   PV F+G G+   DL+    K
Sbjct: 584 GGVIDGIVLTKFDTIDDKVGAALSMVYTSGAPVMFVGCGQTYVDLKKLNVK 634


>gi|256824943|ref|YP_003148903.1| signal recognition particle subunit FFH/SRP54 (srp54) [Kytococcus
           sedentarius DSM 20547]
 gi|256688336|gb|ACV06138.1| signal recognition particle subunit FFH/SRP54 (srp54) [Kytococcus
           sedentarius DSM 20547]
          Length = 604

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 132/290 (45%), Gaps = 35/290 (12%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+ + V ++    +  +    +VS      Q+V+  V+E +  +L   ++     F
Sbjct: 38  LLDADVALPVVKQFTSVVRERATGAEVSQALNPAQQVVKIVNEELVDILGGETRTIR--F 95

Query: 108 SHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           + RP  VI++ G+ G GKTT+ GKL   +   G   +L A D  R  A++QL++  +R  
Sbjct: 96  AKRPPTVIMLAGLQGAGKTTLAGKLGHWLKQQGHTPLLVACDLQRPNAVNQLQVVGERAG 155

Query: 167 ADFVCSEIGS------------------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                 E G+                  D   +A     Q QA++ DV+IIDTAGRL  +
Sbjct: 156 VPVYAPEKGNVFGHDAALDTGEGTRSFGDPVEVARRGVAQGQARQHDVVIIDTAGRLAVD 215

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM     +   +       P  VL V+DA  GQ A+     F      TG++++K+DG
Sbjct: 216 ENLMQQAADIRAAVN------PEEVLFVIDAMIGQAAIDTAMAFDEGVNFTGVVLSKLDG 269

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGE 318
            ARGG  + +      PV F   GE + D E F     ++ I   LD G+
Sbjct: 270 DARGGAALSVASVTGKPVMFASTGEQVKDFEVFHPDRMASRI---LDMGD 316


>gi|58221317|gb|AAW68301.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 140

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 77/118 (65%), Gaps = 1/118 (0%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + E ++ ++ PL KP     +  P VI++ G+NG GKTT IGKL+K     G  V+LAAG
Sbjct: 22  LKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAG 81

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           DTFR+AA +QL+ W    +   V S+   D+AA+ ++A + A+A+ +D+++ DTAGRL
Sbjct: 82  DTFRAAAREQLQAWGGCNNVT-VISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRL 138


>gi|332372748|gb|AEE61516.1| unknown [Dendroctonus ponderosae]
          Length = 623

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 111/221 (50%), Gaps = 30/221 (13%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           + RP V+   GVNGVGK+T + K+   + +  L+V++AA DTFR+ A++QL+      +A
Sbjct: 401 NRRPFVMSFCGVNGVGKSTNLSKICFWLIENDLQVLIAACDTFRAGAVEQLRTHMRHLNA 460

Query: 168 -------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
                               G DAA +A EA K A+  KVDV++IDTAGR+ +N  LM  
Sbjct: 461 LHPPDRHGGKQMVQLYEKGYGKDAAGIAMEAIKFARDTKVDVVLIDTAGRMQDNEPLMRA 520

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----AGTT-----GLIMT 264
           + K+I+V      + P  VL V +A  G  A+ Q+  F+       A T      G+++T
Sbjct: 521 LTKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYSANTNPHLIDGIVLT 574

Query: 265 KMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           K D    + G  I +      P+ F+G G+   DL+    K
Sbjct: 575 KFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKALNVK 615


>gi|331241410|ref|XP_003333353.1| signal recognition particle receptor subunit alpha [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309312343|gb|EFP88934.1| signal recognition particle receptor subunit alpha [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 691

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 110/225 (48%), Gaps = 39/225 (17%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA----- 162
           S  P+V+  VGVNGVGK+T + K++  +    L+V++AA DTFRS A++QL+        
Sbjct: 460 STAPYVMTFVGVNGVGKSTNLSKVAFWLLQNRLRVLIAACDTFRSGAVEQLRTHVRNLGK 519

Query: 163 ---------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
                          +R   +      G DAA +A EA + A+    DV++IDTAGR+ +
Sbjct: 520 LDGAIEHQSPNSNHEERKMIELFEKGYGKDAAGIAKEAIQYAKNDGFDVVLIDTAGRMQD 579

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------------HAV 255
           N  LM  +GK++ V      + P  +L V +A  G  A+ Q+  F            H  
Sbjct: 580 NEPLMRALGKLVVV------NQPDKILFVGEALVGNEAVDQLGKFDKSLKTFSGLDSHLP 633

Query: 256 AGTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            G  G+I+TK D    + G  + +  T   P+ F+G G+   DL+
Sbjct: 634 RGIDGIILTKFDTIDDKVGAALSMTYTINQPILFVGTGQTYTDLK 678


>gi|224613354|gb|ACN60256.1| Signal recognition particle receptor subunit alpha [Salmo salar]
          Length = 521

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 111/220 (50%), Gaps = 30/220 (13%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA- 167
            RP VI   GVNGVGK+T + K+S  + + G  V++AA DTFR+ A++QL+    R ++ 
Sbjct: 299 RRPFVITFCGVNGVGKSTNLAKISFWLIENGFTVLIAACDTFRAGAVEQLRTHQRRLNSL 358

Query: 168 ------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
                              G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  +
Sbjct: 359 HPPQDHGGRPIVQLYEKGYGKDAAGIAMEAIAYARNQAFDVVLVDTAGRMQDNTPLMTAL 418

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGTT----GLIMTK 265
            K+I V      + P  VL V +A  G  A+ Q+  F      H+++       G+++TK
Sbjct: 419 AKLIAV------NMPDLVLFVGEALVGNEAVDQLVKFNQALADHSMSDKPRLIDGIVLTK 472

Query: 266 MDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            D    + G  I +      P+ F+G G+  NDL    A+
Sbjct: 473 FDTIDDKVGAAISMTYITGQPIVFVGTGQTYNDLRSLNAR 512


>gi|194246474|ref|YP_002004113.1| Signal recognition particle, subunit FFH/SRP54 [Candidatus
           Phytoplasma mali]
 gi|193806831|emb|CAP18260.1| Signal recognition particle, subunit FFH/SRP54 [Candidatus
           Phytoplasma mali]
          Length = 456

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 141/281 (50%), Gaps = 21/281 (7%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL 99
           + EE+   L+++D+   V ++   ++ +K   ++V       Q+V+  +++ + ++L   
Sbjct: 29  IMEEIRLSLLQADVNYEVVEEFNSKVKSKALGQEVLKSLNPSQQVIKILNDTLVEVLNSK 88

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAI 155
           +   N+  ++     +++G+ G GKTT  GKL+    KK      KV+L A D +R  AI
Sbjct: 89  NIHLNFANNNEITTFMLIGLQGSGKTTTAGKLAILAHKKFQK---KVLLIACDIYRPGAI 145

Query: 156 DQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           +QL+   +R + + F   ++      +  E  K A   + DV+IIDTAG L  N  ++  
Sbjct: 146 EQLQDIGNRININVFFKKDVT--VENIISEGLKYASLNQYDVVIIDTAGTLSINKAMIQE 203

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + KMI+ L       P  +  V+D   G+      + F+     TG+I+TKMD   +GG 
Sbjct: 204 L-KMIKNLSN-----PSEIFLVVDVLFGKEITNVAKTFNEKLQVTGVILTKMDADVKGGA 257

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++ +  T  +P+  +   E INDLE F AK  ++ + G  D
Sbjct: 258 VLSVKATTNLPIKLMSSSEKINDLEFFDAKRMASRLLGMGD 298


>gi|195438862|ref|XP_002067351.1| GK16226 [Drosophila willistoni]
 gi|194163436|gb|EDW78337.1| GK16226 [Drosophila willistoni]
          Length = 624

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 145/303 (47%), Gaps = 44/303 (14%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--- 102
           E++ D LI  ++   +A K+ + + T    K + +   +   V E + + L+ +  P   
Sbjct: 330 EKMRDHLISKNVASEIAIKLCDSVATSLEGKQMGTFDSIATLVKEALTQSLVRILSPKRR 389

Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                       + +P+ I+  GVNGVGK+T + K+   + +    V++AA DTFR+ A+
Sbjct: 390 IDIIRDALESKRNGKPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 449

Query: 156 DQLKIWA-------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QL+                +R+         G DAA +A EA K A   KVDV+++DTA
Sbjct: 450 EQLRTHTRHLNALHPPAKHNNRSMVQLYEKGYGKDAAGIAMEAIKYAHDTKVDVVLVDTA 509

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259
           GR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ ++A  +  
Sbjct: 510 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 563

Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                  G+++TK D    + G  I +      P+ F+G G+   DL+   A + +AV+ 
Sbjct: 564 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK---AINVNAVVN 620

Query: 312 GCL 314
             +
Sbjct: 621 SLM 623


>gi|86747479|ref|YP_483975.1| signal recognition particle protein [Rhodopseudomonas palustris
           HaA2]
 gi|86570507|gb|ABD05064.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Rhodopseudomonas palustris HaA2]
          Length = 514

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 135/279 (48%), Gaps = 13/279 (4%)

Query: 43  DGVREELEDLLIRSDIGVAVAQ----KIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +    K+ E+ +     K V   Q V+  V++ +  ML 
Sbjct: 28  DAAMREIRRALLEADVALEVVRSFTDKVREQAVGATVVKSVKPGQMVVKIVNDELIAMLG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
             S+  + + +  P  I++VG+ G GKTT   KL+++M S    KV++A+ D +R AA++
Sbjct: 88  SDSQAIDLN-AVAPVPIMMVGLQGSGKTTTTAKLARRMTSRDKRKVLMASLDVYRPAAME 146

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL +     S D +    G     +A  A +  +    DV+++DTAGR   +  +M    
Sbjct: 147 QLAVLGRDLSIDTLPIVAGQKPPDIARRAMEAGRLGGYDVVLLDTAGRTTLDEDMMTEAA 206

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           ++           PH VL V D+ TGQ+A+     F    G TG+++T++DG  RGG  +
Sbjct: 207 EIKAAAN------PHEVLLVADSLTGQDAVNLARAFDERVGLTGIVLTRIDGDGRGGAAL 260

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +      P+  +G GE  + LE F     +  I G  D
Sbjct: 261 SMRAVTGKPIKLMGTGEKTDALEDFHPSRIAGRILGMGD 299


>gi|14719791|pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
           A. Ambivalens T112a Mutant
          Length = 297

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 146/315 (46%), Gaps = 38/315 (12%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV----AVA 63
           S+ L  +R   + F + S    + + D I          +EL+  LI +D+ V    ++ 
Sbjct: 1   SKLLDNLRDTVRKFLTGSSSYDKAVEDFI----------KELQKSLISADVNVKLVFSLT 50

Query: 64  QKIVEELLTKRYAKDVSVQ----RVLYDVSELIHKMLMPLSKPFNWDFSHR------PHV 113
            KI E L  ++    +  +    +++YD           LS  F  D   +      P+V
Sbjct: 51  NKIKERLKNEKPPTYIERREWFIKIVYD----------ELSNLFGGDKEPKVIPDKIPYV 100

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I++VGV G GK T  GKL+      G KV L   D +R AA++QL+    +         
Sbjct: 101 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEP 160

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D   +A    ++  ++K++++I+DTAGR H      A + +M  + + + P     V
Sbjct: 161 GEKDVVGIAKRGVEKFLSEKMEIIIVDTAGR-HGYGEEAALLEEMKNIYEAIKPD---EV 216

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             V+DA+ GQ A      F+  +    +I+TKMDGTA+GGG +  V      + F+G GE
Sbjct: 217 TLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGE 276

Query: 294 GINDLEPFVAKDFSA 308
            I++LE F  + F A
Sbjct: 277 KIDELEVFNPRRFVA 291


>gi|15835651|ref|NP_300175.1| signal recognition particle GTPase [Chlamydophila pneumoniae J138]
 gi|16752929|ref|NP_445200.1| signal recognition particle protein FFH [Chlamydophila pneumoniae
           AR39]
 gi|33241451|ref|NP_876392.1| signal recognition particle chain [Chlamydophila pneumoniae TW-183]
 gi|7189572|gb|AAF38471.1| signal recognition particle protein FFH [Chlamydophila pneumoniae
           AR39]
 gi|8978489|dbj|BAA98326.1| signal recognition particle GTPase [Chlamydophila pneumoniae J138]
 gi|33235959|gb|AAP98049.1| signal recognition particle chain [Chlamydophila pneumoniae TW-183]
          Length = 448

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 149/309 (48%), Gaps = 30/309 (9%)

Query: 23  STSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLTKR 74
           S S KL    + ++SSRR+ ++ + E + ++   L+ +D+   V +    K+ E++L + 
Sbjct: 4   SLSQKLSSIFSFLVSSRRINEENISESIREVRLALLDADVNYHVVKDFISKVKEKILGEE 63

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS--HRPHVILVVGVNGVGKTTVIGKLS 132
             K VS  +        +H+ L+        +F+    P +IL+ G+ G GKTT   KL+
Sbjct: 64  IWKHVSPGQQFI---RCLHEELVAFLSDGREEFTIQKTPSIILLCGLQGAGKTTTAAKLA 120

Query: 133 KKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE----IGSDAAALAYEAF 186
             +  +    KV++   D  R AA+DQLKI   +T A+F  S+    I     ALAY   
Sbjct: 121 DYVIKNKKAKKVLVVPCDLKRFAAVDQLKILVAQTKAEFYQSQENKPIDVVVKALAY--- 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+    D +I+DTAGRL+ ++ LM  +  + +V         +  L V++   GQ+ L
Sbjct: 178 --AKENGHDFVILDTAGRLNIDNELMEELTAIQKV------SQANERLFVMNVAMGQDVL 229

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             V+ F      TG+I++  DG AR G +  I      P+ F G GE I DL  F  +  
Sbjct: 230 ATVQAFDQSLDLTGVILSMTDGDARAGAVFSIKHVLGKPIKFEGCGERIQDLRSFDPQSM 289

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 290 AERILGMGD 298


>gi|316931782|ref|YP_004106764.1| signal recognition particle protein [Rhodopseudomonas palustris
           DX-1]
 gi|315599496|gb|ADU42031.1| signal recognition particle protein [Rhodopseudomonas palustris
           DX-1]
          Length = 514

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 8/214 (3%)

Query: 104 NWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIW 161
           + D +  P V I++VG+ G GKTT   KL+++M++    KV++A+ D +R AA++QL + 
Sbjct: 92  SIDLNAVPPVPIMMVGLQGSGKTTTTAKLARRMTERDKRKVLMASLDVYRPAAMEQLAVL 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
               S D +    G     +A  A +  +    DV+++DTAGR   +  +M    ++   
Sbjct: 152 GRDLSIDTLPIVAGQQPPDIARRAMEAGKLGGYDVVLLDTAGRTTLDEEMMTEAAEIKAA 211

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                   PH VL V D+ TGQ+A+     F    G TG+++T++DG  RGG  + +   
Sbjct: 212 AN------PHEVLLVADSLTGQDAVNLARAFDQRVGLTGIVLTRIDGDGRGGAALSMRAV 265

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+  +G GE  + LE F     ++ I G  D
Sbjct: 266 TGKPIKLMGTGEKTDALEDFHPSRIASRILGMGD 299


>gi|311898552|dbj|BAJ30960.1| putative signal recognition particle protein [Kitasatospora setae
           KM-6054]
          Length = 519

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 140/281 (49%), Gaps = 15/281 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  ++++  +    +VS      Q+++  V+E +  +L 
Sbjct: 28  DATAREIRIALLEADVALPVVRAFIKQVKDRALGSEVSGALNPAQQIIKIVNEELISILG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +  +  P VI++ G+ G GKTT+ GKL   +       +L A D  R  A+ Q
Sbjct: 88  GETRRLRFAKTG-PTVIMLAGLQGAGKTTLAGKLGHWLKSQKHTPLLVACDLQRPNAVTQ 146

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R    F   + G+   D   +A ++ + A+ K+ DV+I+DTAGRL  ++ LM  
Sbjct: 147 LGVVAERAGVAFYGPQPGNGVGDPVQVARDSIEYAKQKQYDVVIVDTAGRLGIDAELMR- 205

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
             +   +   +DP     VL V+DA  GQ+A+   + F      TG++++K+DG ARGG 
Sbjct: 206 --QAADIRAAIDPD---EVLFVVDAMVGQDAVTTAQAFLEGVDFTGVVLSKLDGDARGGA 260

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +       + F   GE ++D + F     ++ I G  D
Sbjct: 261 ALSVAHVTGRQIMFASNGEKVDDFDAFHPDRMASRILGMGD 301


>gi|321473979|gb|EFX84945.1| hypothetical protein DAPPUDRAFT_300824 [Daphnia pulex]
          Length = 621

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 140/295 (47%), Gaps = 41/295 (13%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-----VSELIHKMLMP- 98
           V +++ D LI  ++   +A K+ + +  K   K +     L +     ++E + ++L P 
Sbjct: 325 VLDKMRDHLIAKNVASEIAGKLCDSVAAKLNGKVLGTFESLANTVKASLTESLVQILSPR 384

Query: 99  -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                L   F     +RP+V+   GVNGVGK+T + K+   + +   +V++AA DTFR+ 
Sbjct: 385 RRVDILRDVFESQRQNRPYVMSFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAG 444

Query: 154 AIDQLKI-------------WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           A++QL+                 R          G DAA +A EA   A+   +DV++ID
Sbjct: 445 AVEQLRTHMRHLNSIHPPEKHGGRQMVQLYEKGYGKDAAGIALEAINYARDGGIDVVMID 504

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259
           TAGR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ A+A  +
Sbjct: 505 TAGRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYS 558

Query: 260 ---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                    G+++TK D    + G  I +      P+ F+G G+   DL+    K
Sbjct: 559 NSENPHTIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFIGTGQTYADLKTLNVK 613


>gi|298526385|ref|ZP_07013794.1| signal peptide binding domain-containing protein [Mycobacterium
           tuberculosis 94_M4241A]
 gi|298496179|gb|EFI31473.1| signal peptide binding domain-containing protein [Mycobacterium
           tuberculosis 94_M4241A]
          Length = 462

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 108/212 (50%), Gaps = 13/212 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+++ G+ G GKTT+ GKL+ ++   G   +L A D  R AA++QL++  +R      
Sbjct: 37  PTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVF 96

Query: 171 CSEIGS-------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
               G+       D  A+A     +A+AK  DV+I+DTAGRL  +  LMA     IR   
Sbjct: 97  APHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRLGIDEELMA-QAAAIR--- 152

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             D   P  VL VLDA  GQ+A+     F    G TG+ +TK+DG ARGG  + +     
Sbjct: 153 --DAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTG 210

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +P+ F   GE + D + F     ++ I G  D
Sbjct: 211 VPILFASTGEKLEDFDVFHPDRMASRILGMGD 242


>gi|330993998|ref|ZP_08317928.1| Signal recognition particle protein [Gluconacetobacter sp. SXCC-1]
 gi|329758944|gb|EGG75458.1| Signal recognition particle protein [Gluconacetobacter sp. SXCC-1]
          Length = 453

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 112/215 (52%), Gaps = 8/215 (3%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKI 160
           P N + +  P  IL+VG+ G GKTT  GK++++++    K V+LA+ DT R AA  QL  
Sbjct: 82  PLNLNAAP-PVPILMVGLQGSGKTTTSGKIARRLAQRERKKVLLASLDTQRPAAQLQLAQ 140

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A+R     +    G     +A  A    + +  D++I+DTAGRL  +  LM  + + IR
Sbjct: 141 LAERAGVASLPIIAGQTPVQIAQRAMDTGRREGYDIVILDTAGRLSIDEALMDEV-RAIR 199

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
                    P   L V+DA TGQ+A+   + F+   G TG++MT+MDG ARGG  + +  
Sbjct: 200 A-----ETDPAETLLVVDAMTGQDAVNTAKAFNEAVGVTGVVMTRMDGDARGGAALSMRA 254

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+   G GE ++ LE F  +  +  I G  D
Sbjct: 255 ITGAPIKLTGSGEKLDALEEFHPERVAGRILGLGD 289


>gi|15895031|ref|NP_348380.1| Signal recognition particle GTPase Ffh [Clostridium acetobutylicum
           ATCC 824]
 gi|15024723|gb|AAK79720.1|AE007684_8 Signal recognition particle GTPase Ffh [Clostridium acetobutylicum
           ATCC 824]
 gi|325509168|gb|ADZ20804.1| Signal recognition particle GTPase Ffh [Clostridium acetobutylicum
           EA 2018]
          Length = 449

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 153/307 (49%), Gaps = 22/307 (7%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F   S KL+  +  +     +S + + D +RE ++  L+ +D+   + +  V+ +  K  
Sbjct: 3   FEGLSTKLQAAMKKLRGKGKLSEKDIKDAMRE-VKLALLEADVNYKIVKNFVKVVGEKCL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E +  ++        ++  +   VI+ VG+ G GKTT+ GK
Sbjct: 62  GNEVMESLTPGQQVIKIVNEELTNLMGKEESKIEFE-ENGITVIMAVGLQGAGKTTMCGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--DAAALAYEAFKQ 188
           LS  +     K +L A D +R AAI QL++     S D     +G   +   ++  A K 
Sbjct: 121 LSLSLKKKNKKPLLVACDIYRPAAIKQLEVVG--KSIDVPVFSMGDKVNPVDISKAAMKH 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+   ++V+IIDTAGRLH +  LM  +  +   +       P  +L V+D+ TGQ+A+  
Sbjct: 179 AKENGLNVVIIDTAGRLHIDDQLMNELENIKSEVN------PKEILLVVDSMTGQDAVNV 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F      TG+++TK+DG  RGG  + I      P+ ++G+GE +ND+E F     ++
Sbjct: 233 AESFDNKLELTGVVLTKLDGDTRGGAALSIREMTGKPIKYVGLGEKMNDIEIFHPDRMAS 292

Query: 309 VITGCLD 315
            I G  D
Sbjct: 293 RILGMGD 299


>gi|269955965|ref|YP_003325754.1| signal recognition particle protein [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304646|gb|ACZ30196.1| signal recognition particle protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 532

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 137/301 (45%), Gaps = 27/301 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGRGRLSEADIDATVREIRRALLDADVAVPVVREFTSAIRERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++         P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELVEILGGATRTLVL-AKVPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-----------DAAA 180
           +  +   G   +L A D  R  A+ QL + A+R          G+           D   
Sbjct: 121 AHALKAQGHTPVLVAADLQRPNAVTQLSVVAERAGVPVFAPHPGNQGAVDLDVVIGDPVG 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A +    A+ K+ DV+I+DTAGRL  +++LM     +   +       P  VL V+DA 
Sbjct: 181 VARDGVAFARDKQHDVVIVDTAGRLGVDAVLMQQAADIRAAIN------PDEVLFVIDAM 234

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ+A+     F      TG++++K+DG ARGG  + +      P+ F   GE + D E 
Sbjct: 235 IGQDAVATASAFLEGVDFTGVVLSKLDGDARGGAALSVAKVTGRPIMFASTGEKLTDFEV 294

Query: 301 F 301
           F
Sbjct: 295 F 295


>gi|297559205|ref|YP_003678179.1| signal recognition particle protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843653|gb|ADH65673.1| signal recognition particle protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 531

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 151/311 (48%), Gaps = 25/311 (8%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT  F+S   K +    DI ++ R       E+   L+ +D+ + V ++ +  +  +  
Sbjct: 8   RLTSVFSSLRGKGRLSEEDINATAR-------EIRLALLEADVALPVVREFIARIKERAR 60

Query: 76  AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++VS      Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GK
Sbjct: 61  GEEVSKALNPAQQVIKIVNEELVGILGGETRQIRF-AKNPPTVIMLAGLQGAGKTTLAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L++ ++      +L A D  R  A+ QL++  +R        E G+   D   +A ++ +
Sbjct: 120 LARWLAADRNTPLLVAADLQRPNAVTQLQVVGERAGTPVFAPEPGNGVGDPVQVARQSVE 179

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    +V+IIDTAGRL  +S +M      IR     D   P  +L V+DA  GQ+A+ 
Sbjct: 180 HARRNNHNVVIIDTAGRLGVDSEMMQQAAD-IR-----DAVNPDEILFVVDAMIGQDAVN 233

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F    G   + +TK+DG ARGG  + I      P+ F   GE + D + F     +
Sbjct: 234 TAQAFLDGVGYDAVALTKLDGDARGGAALSIRHITGRPIMFASTGEKLEDFDLFHPDRMA 293

Query: 308 AVITGCLDYGE 318
           + I   LD G+
Sbjct: 294 SRI---LDMGD 301


>gi|268323505|emb|CBH37093.1| signal recognition 54 kDa protein [uncultured archaeon]
          Length = 443

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 146/301 (48%), Gaps = 25/301 (8%)

Query: 25  SLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYAKDV- 79
           S  LKE I  I  ++R+D    +EL    +  L+++D+ +++ +++ + +  +   + + 
Sbjct: 6   SSSLKESIRKIAKAKRIDKRTVDELVRDIQRALLQADVKISLVKELSDHIRERSLKEKML 65

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                 V +V+Y+  ELI+ +   +  P       +P  I++VG++G GKT+   KL++ 
Sbjct: 66  LNPREHVIKVVYE--ELINIIGKGVEVPL------KPQKIMMVGLHGAGKTSSCAKLARY 117

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               GLK  +   D +R  A DQL+   D+    F   +   D   L        +  K 
Sbjct: 118 FQKKGLKPAVICADVYRPGASDQLRQLCDKIGVPFYDGQ-PEDRNVLRIVTSGVNEFDKY 176

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D+ IIDTAGR      ++  I  + +  K      P     VLDA+ GQ A  Q + F  
Sbjct: 177 DIKIIDTAGRHALEPEMIDEIMDIEKATK------PEQRFIVLDASIGQQASVQAKAFDD 230

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
             G TG+I+TKMDGTA+GGG +  V      V F+G GE ++D E F +  F + + G  
Sbjct: 231 AIGITGIIITKMDGTAKGGGALSAVAETDSGVAFIGTGETVDDFEKFESDGFISRLLGMG 290

Query: 315 D 315
           D
Sbjct: 291 D 291


>gi|332827673|gb|EGK00412.1| signal recognition particle protein [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 439

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 150/311 (48%), Gaps = 19/311 (6%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           ESLS   +L + F    LK +  IT+I  +  L D VR  L D    +D+    A++  E
Sbjct: 3   ESLS--NRLERSF--KILKGEGKITEINVAETLKD-VRRALLD----ADVNYKTAKQFTE 53

Query: 69  ELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKT 125
            +  K   ++V +  +    + +++H  L  L      D + +  P VIL+ G+ G GKT
Sbjct: 54  TVKEKALGQNVLTAVKPEQLMVKIVHDELAALMGGTATDINLKGSPAVILMSGLQGSGKT 113

Query: 126 TV-IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T          S  G   +L AGD +R AAI+QLKI   +        E   +   +A  
Sbjct: 114 TFSGKLAKLLKSKKGKNPLLVAGDVYRPAAIEQLKILGTQIEVPVYSEEDSKNPVQIAQN 173

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K A+    D++IIDTAGRL  +  +M    K I  +K  D   P  +L V+D+ TGQ+
Sbjct: 174 AIKFAKQNGNDLVIIDTAGRLAIDEEMM----KEITAVK--DAVKPDEILFVVDSMTGQD 227

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   + F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F  +
Sbjct: 228 AVNTAKEFNDRLNFDGVVLTKLDGDTRGGAALSIRSVVDKPIKFVGTGEKMDALDVFHPE 287

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 288 RMADRILGMGD 298


>gi|72161065|ref|YP_288722.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermobifida
           fusca YX]
 gi|71914797|gb|AAZ54699.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermobifida
           fusca YX]
          Length = 535

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 150/311 (48%), Gaps = 25/311 (8%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +LT  F+S   K +    DI ++ R       E+   L+ +D+ + V ++ +  +  +  
Sbjct: 8   RLTTVFSSLRGKGRLSEEDINTTAR-------EIRVALLEADVALPVVREFIARVKERAR 60

Query: 76  AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +VS      Q+V+  V E + ++L   ++   +  +  P VI++ G+ G GKTT+ GK
Sbjct: 61  GAEVSKALNPAQQVIKIVHEELIEVLGGETRTIRFAKTP-PTVIMLAGLQGAGKTTLAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L+K ++D     +L A D  R  A+ QL++  +R +      E G+   D   +A  +  
Sbjct: 120 LAKWLADQRNTPLLVAADLQRPNAVTQLQVLGERANVAVYAPEPGNGVGDPVEVARSSID 179

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    +V+IIDTAGRL  +  +M      IR     D  +P  +L V+DA  GQ+A+ 
Sbjct: 180 YARRNNYNVVIIDTAGRLGIDEEMMQQAAD-IR-----DAVSPDEILFVVDAMIGQDAVT 233

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F    G   + +TK+DG ARGG  + I      P+ F   GE + D + F     +
Sbjct: 234 TAQAFLEGVGYDAVALTKLDGDARGGAALSIRHLTGRPIMFASTGEKLEDFDLFHPDRMA 293

Query: 308 AVITGCLDYGE 318
           + I   LD G+
Sbjct: 294 SRI---LDMGD 301


>gi|210633180|ref|ZP_03297716.1| hypothetical protein COLSTE_01629 [Collinsella stercoris DSM 13279]
 gi|210159220|gb|EEA90191.1| hypothetical protein COLSTE_01629 [Collinsella stercoris DSM 13279]
          Length = 494

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 105/208 (50%), Gaps = 7/208 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P+VI++VG+ G GKTT   KL+  +   G   +LAA D +R AA DQL         
Sbjct: 104 SRIPNVIMLVGLQGSGKTTAAVKLAYMLKKQGKSPLLAACDVYRPAAADQLATLGGEIGV 163

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                + G+    +A  + ++A     DV+I+DTAGRL  +  +M     + + +K    
Sbjct: 164 PVFRGD-GAHPVEIARASIREAVDTMRDVVIVDTAGRLQIDEEMMQEAVDIKKAVK---- 218

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  VL V+DA TGQ+ +  V  F       G+I++K+DG ARGGG + +      P+ 
Sbjct: 219 --PDQVLMVVDAMTGQDIVNVVSTFAERTDFDGVIISKLDGDARGGGALSVREVTGKPIK 276

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+ +GE  + LE F  +  +  I G  D
Sbjct: 277 FVSMGEKPDSLEVFSPERMAKRILGMGD 304


>gi|229815430|ref|ZP_04445762.1| hypothetical protein COLINT_02478 [Collinsella intestinalis DSM
           13280]
 gi|229808963|gb|EEP44733.1| hypothetical protein COLINT_02478 [Collinsella intestinalis DSM
           13280]
          Length = 493

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 105/208 (50%), Gaps = 7/208 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P+VI++VG+ G GKTT   KL+  +   G   +LAA D +R AA DQL         
Sbjct: 99  SRIPNVIMLVGLQGSGKTTAAVKLAYMLKKQGKSPLLAACDVYRPAAADQLATLGGEIGV 158

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                + G+    +A  + ++A     DV+I+DTAGRL  +  +M     + + +K    
Sbjct: 159 PVFRGD-GAHPVDIARASIREAVDNMRDVVIVDTAGRLQIDEQMMQEAVDIKKAVK---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  VL V+DA TGQ+ +  V  F       G+I++K+DG ARGGG + +      P+ 
Sbjct: 214 --PDQVLMVVDAMTGQDIVNVVSTFAERTDFDGVIISKLDGDARGGGALSVREVTGKPIK 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+ +GE  + LE F  +  +  I G  D
Sbjct: 272 FVSMGEKPDSLEVFNPERMAKRILGMGD 299


>gi|258542793|ref|YP_003188226.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633871|dbj|BAH99846.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636930|dbj|BAI02899.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639983|dbj|BAI05945.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643039|dbj|BAI08994.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646094|dbj|BAI12042.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649147|dbj|BAI15088.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652134|dbj|BAI18068.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655191|dbj|BAI21118.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 467

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 113/215 (52%), Gaps = 8/215 (3%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKI 160
           P N + S  P  +L+VG+ G GKTT  GKL+ ++ +    KV+LA+ DT R AA  QL  
Sbjct: 93  PLNLN-STPPVPVLMVGLQGSGKTTTSGKLALRLKTRERKKVLLASLDTQRPAAQLQLAQ 151

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A++     +    G     +A  A    + +  DV+I+DTAGRL  +  LM  + + IR
Sbjct: 152 LAEQVGVTSLPIVAGQTPVEIAKRALDTGRREGYDVVILDTAGRLSIDEALMDEV-RQIR 210

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
                D   P   L V+DA TGQ+A+   + F+   G TG++MT+MDG +RGG  + +  
Sbjct: 211 -----DVTHPAETLLVVDAMTGQDAVNTAKAFNEAVGVTGVVMTRMDGDSRGGAALSMRA 265

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+  +G GE ++ L+ F  +  +  I G  D
Sbjct: 266 ITGAPIKLIGTGEKLDGLDEFYPERVAGRILGLGD 300


>gi|269215483|ref|ZP_06159337.1| signal recognition particle protein [Slackia exigua ATCC 700122]
 gi|269130970|gb|EEZ62045.1| signal recognition particle protein [Slackia exigua ATCC 700122]
          Length = 472

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 100/208 (48%), Gaps = 7/208 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P+VI++VG+ G GKTT   KL+  +   G   +L A DT+R AA DQL+        
Sbjct: 97  SRIPNVIMLVGLQGSGKTTAAAKLAYLLKSKGHSPLLVACDTYRPAAADQLETLGSEIGV 156

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                + G+    +A E  + A     DV+I+DTAGRL  +  +MA    +   ++    
Sbjct: 157 KVFRGD-GAHPVGIAQEGVRFAIDNLRDVVIVDTAGRLQVDEAMMAEAADIKAAVE---- 211

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  +  V+DA TGQ  +     F       G I++KMDG ARGGG + ++     P+ 
Sbjct: 212 --PDQIFMVVDAMTGQEIVNVASAFAERVDFDGAIVSKMDGDARGGGALSLMQVTGKPIK 269

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+  GE  + LE F     +  I G  D
Sbjct: 270 FISAGEKPDSLEEFHPDRMAKRILGMGD 297


>gi|294952735|ref|XP_002787438.1| signal recognition particle receptor alpha subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|239902410|gb|EER19234.1| signal recognition particle receptor alpha subunit, putative
           [Perkinsus marinus ATCC 50983]
          Length = 882

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 150/299 (50%), Gaps = 33/299 (11%)

Query: 21  FASTSLKLKEGIT--DIISSRRLDDGVREELEDLLIRS---DIGVAVAQKIVEELLTKRY 75
           FA+ + +LK  IT   ++++R L+  +    E L+ ++   D+  A+A  +   L+  R 
Sbjct: 296 FATLTRQLK-NITGNQVLTNRDLEPVLATFCEQLMSKNVAMDVANAIADGVSSSLVGTRT 354

Query: 76  AKDVSVQRVLYD-VSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +  SV   + D +++ I ++L P      L        + + + I+ +GVNGVGK+T +
Sbjct: 355 GQFTSVHTTVKDALTQSISRILTPKKSVDVLRAAMQAKANGQVYSIVFLGVNGVGKSTNL 414

Query: 129 GKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            K++  +    GL+V++ A DTFR+ A++QL+  A   + D      G DAA +A +   
Sbjct: 415 SKVAYYLRKKGGLRVLICACDTFRAGAVEQLRTHARCLNVDLFEKGYGKDAAEIAKQGLY 474

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DV++IDTAGR+ +N  LM  + +++ V      + P  +L V +A  G +A+ 
Sbjct: 475 YAKHNAYDVVLIDTAGRMQDNEPLMKSLARLVAV------NNPDLILFVGEALVGYDAID 528

Query: 248 QVEMF------------HAVAGTTGLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGE 293
           Q+  F             +  G  G+++TK D    + G  + +V     P+ F+G G+
Sbjct: 529 QLTKFDRALMDYSLSNKDSSNGIDGILLTKYDTVDDKVGAALSMVYITGEPIVFVGTGQ 587


>gi|189531921|ref|XP_697518.3| PREDICTED: signal recognition particle receptor subunit alpha
           isoform 2 [Danio rerio]
          Length = 650

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 141/295 (47%), Gaps = 41/295 (13%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP- 102
           V ++++D LI  ++   +A ++ + +  K   K + +   V   V + +   L+ + +P 
Sbjct: 353 VLDKMKDHLIAKNVAAEIASQLCDSVAKKLEGKVMGTFTTVASTVKQALQDSLVQILQPK 412

Query: 103 ---------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                           +P VI   GVNGVGK+T + K+S  + + G  V++AA DTFR+ 
Sbjct: 413 RRVDILRDVLEARSQRKPFVITFCGVNGVGKSTNLAKISYWLIENGFTVLIAACDTFRAG 472

Query: 154 AIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           A++QL+    R ++                    G DAA +A EA   A+ +  DV++ID
Sbjct: 473 AVEQLRTHQRRLNSLHPPEKHGGQPAVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLID 532

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259
           TAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F+ A+A  +
Sbjct: 533 TAGRMQDNAPLMTALAKLIAV------NTPDLVLFVGEALVGNEAVDQLVKFNRALADHS 586

Query: 260 ---------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                    G+++TK D    + G  I +      P+ F+G G+  +DL    A+
Sbjct: 587 KSDKPRLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYSDLRSLNAR 641


>gi|323453480|gb|EGB09351.1| hypothetical protein AURANDRAFT_36905 [Aureococcus anophagefferens]
          Length = 577

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 140/289 (48%), Gaps = 39/289 (13%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTK---RYAK---------DVSV 81
           +R L D   E+L   L+  ++ V VA  I     E L+ K   R+A+           +V
Sbjct: 287 TRELVDPAMEKLRTTLMEKNVAVEVADAITATVSESLVGKKVERFARAKTLVRDALKDAV 346

Query: 82  QRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
            RVL     ++++ ++L    +P        P+ I+ VG+NGVGK+T + K++  + + G
Sbjct: 347 ARVLTPKRSTDVLREVLAAKKRP------KGPYSIVFVGINGVGKSTSLSKVAYYLKEHG 400

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
           + VM+ A DTFRS A++QL+  A     +        D   +A  +   A+++  + ++I
Sbjct: 401 VDVMITACDTFRSGAVEQLRSHAKCLDVELYEKGYLKDPGDVAKASLDHAKSRGKECVLI 460

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT- 258
           DTAGR+ NN  LM  + K+I V      ++P  VL V +A  G + + Q+ MF+      
Sbjct: 461 DTAGRMQNNERLMRELAKLISV------NSPDLVLFVGEALVGNDGIDQLNMFNKSLAQF 514

Query: 259 -------TGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
                   GL++TK D    + G  + +      P+ F+GVG+    L+
Sbjct: 515 CPDGRQIDGLVLTKFDTIDDKVGATLSMTYKTGQPIMFIGVGQKYTHLK 563


>gi|116193091|ref|XP_001222358.1| hypothetical protein CHGG_06263 [Chaetomium globosum CBS 148.51]
 gi|88182176|gb|EAQ89644.1| hypothetical protein CHGG_06263 [Chaetomium globosum CBS 148.51]
          Length = 651

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 141/281 (50%), Gaps = 31/281 (11%)

Query: 40  RLDDGVREELEDLLIRSDIGV-AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           RL +GV +EL  +   +   + A  QK +E  LTK      S+  +L ++  +       
Sbjct: 376 RLCEGVEKELLGVKTGNFESINARIQKAMEASLTKMLTPTSSLD-LLREIDAITAPSATS 434

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           L K        RP+V+ +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++QL
Sbjct: 435 LRK-------ARPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQL 487

Query: 159 KIWADRTSADFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +   R   +    E           G DAAA+A +A   A  +  DV++IDTAGR HN+
Sbjct: 488 AVHV-RNLKELTAREGGQVELYQKGYGKDAAAVAKDAVAFAAQEGFDVVLIDTAGRRHND 546

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMT 264
             LM+ + K  +  +      P  +L V +A  G +++ Q   F+A  G+     G I++
Sbjct: 547 QRLMSSLEKFAKFAQ------PDKILMVGEALVGTDSVAQARNFNAAFGSGRSLDGFIIS 600

Query: 265 KMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           K D      G L+ IV    +PV F+GVG+  +DL  F  K
Sbjct: 601 KCDTVGDMVGTLVSIVHATNVPVLFVGVGQHYSDLRNFSVK 641


>gi|326676235|ref|XP_003200533.1| PREDICTED: signal recognition particle receptor subunit alpha
           isoform 1 [Danio rerio]
          Length = 622

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 141/295 (47%), Gaps = 41/295 (13%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP- 102
           V ++++D LI  ++   +A ++ + +  K   K + +   V   V + +   L+ + +P 
Sbjct: 325 VLDKMKDHLIAKNVAAEIASQLCDSVAKKLEGKVMGTFTTVASTVKQALQDSLVQILQPK 384

Query: 103 ---------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                           +P VI   GVNGVGK+T + K+S  + + G  V++AA DTFR+ 
Sbjct: 385 RRVDILRDVLEARSQRKPFVITFCGVNGVGKSTNLAKISYWLIENGFTVLIAACDTFRAG 444

Query: 154 AIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           A++QL+    R ++                    G DAA +A EA   A+ +  DV++ID
Sbjct: 445 AVEQLRTHQRRLNSLHPPEKHGGQPAVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLID 504

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT 259
           TAGR+ +N+ LM  + K+I V      + P  VL V +A  G  A+ Q+  F+ A+A  +
Sbjct: 505 TAGRMQDNAPLMTALAKLIAV------NTPDLVLFVGEALVGNEAVDQLVKFNRALADHS 558

Query: 260 ---------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                    G+++TK D    + G  I +      P+ F+G G+  +DL    A+
Sbjct: 559 KSDKPRLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYSDLRSLNAR 613


>gi|39933322|ref|NP_945598.1| signal recognition particle protein [Rhodopseudomonas palustris
           CGA009]
 gi|39652947|emb|CAE25689.1| signal recognition particle protein [Rhodopseudomonas palustris
           CGA009]
          Length = 516

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 17/281 (6%)

Query: 43  DGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKML 96
           D    E+   L+ +D+ + V     +++ E+ +     K V   +++  +   ELI  + 
Sbjct: 28  DAAMREIRRALLEADVALEVVRSFTERVREQAVGATVVKSVKPGQMVVKIVNDELIATLG 87

Query: 97  MPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAA 154
              S+  + D +  P V I++VG+ G GKTT   KL+++M++    KV++A+ D +R AA
Sbjct: 88  ---SEVQSIDLNAVPPVPIMMVGLQGSGKTTTTAKLARRMTERDKRKVLMASLDVYRPAA 144

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           ++QL +       D +    G     +A  A +  +    DV+++DTAGR   +  +M  
Sbjct: 145 MEQLAVLGRDLQIDTLPIVAGQQPPDIARRAMEAGKLGGYDVVLLDTAGRTTLDEDMMTE 204

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
             ++           PH VL V D+ TGQ+A+     F    G TG+++T++DG  RGG 
Sbjct: 205 AAEIKAAAN------PHEVLLVADSLTGQDAVNLARAFDQRVGLTGIVLTRIDGDGRGGA 258

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+  +G GE  + LE F     ++ I G  D
Sbjct: 259 ALSMRAVTGKPIKLMGTGEKTDALEDFHPSRIASRILGMGD 299


>gi|225028000|ref|ZP_03717192.1| hypothetical protein EUBHAL_02269 [Eubacterium hallii DSM 3353]
 gi|224954714|gb|EEG35923.1| hypothetical protein EUBHAL_02269 [Eubacterium hallii DSM 3353]
          Length = 451

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 147/304 (48%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+    ++ S  RL +  V+E ++++   L+ +D+   V +  V+ +  +   
Sbjct: 3   FESLTDKLQNVFKNLRSKGRLTEADVKEAMKEVKRALLEADVNFRVVKSFVKTVTDRAIG 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V E +  ++            +   V L+ G+ G GKTT   K+
Sbjct: 63  QDVLTGLNPGQMVIKIVKEEMESLMGSEMTELVIKQGNEITVFLMAGLQGAGKTTTCAKI 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++   G K +L A D +R AAI QL++   +            +   +A  + + A+ 
Sbjct: 123 AGQLKKKGKKPLLVACDVYRPAAIKQLEVNGAKQGVPVFTMGDKQNPVDIAKASIEHAKE 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DTAGRLH +  +M  +  +     + +     +VL V+DA TGQ+A+   + 
Sbjct: 183 NDNNIVILDTAGRLHVDESMMEELQNI-----KANVDVTQTVL-VVDAMTGQDAVNVAKT 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+I+TK+DG  RGG  + I      P+ ++G+GE + DL+ F     ++ I 
Sbjct: 237 FEEKVGIDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLEDLQQFYPDRMTSRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|329114608|ref|ZP_08243367.1| Signal recognition particle protein [Acetobacter pomorum DM001]
 gi|326696088|gb|EGE47770.1| Signal recognition particle protein [Acetobacter pomorum DM001]
          Length = 481

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 113/215 (52%), Gaps = 8/215 (3%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKI 160
           P N + S  P  +L+VG+ G GKTT  GKL+ ++ +    KV+LA+ DT R AA  QL  
Sbjct: 107 PLNLN-STPPVPVLMVGLQGSGKTTTSGKLALRLKTRERKKVLLASLDTQRPAAQLQLAQ 165

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A++     +    G     +A  A    + +  DV+I+DTAGRL  +  LM  + + IR
Sbjct: 166 LAEQVGVTSLPIIAGQTPVEIAKRALDTGRLEGYDVVILDTAGRLSIDEALMDEV-RQIR 224

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
                D   P   L V+DA TGQ+A+   + F+   G TG++MT+MDG +RGG  + +  
Sbjct: 225 -----DVTHPAETLLVVDAMTGQDAVNTAKAFNEAVGVTGVVMTRMDGDSRGGAALSMRA 279

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+  +G GE ++ L+ F  +  +  I G  D
Sbjct: 280 ITGAPIKLIGTGEKLDGLDEFYPERVAGRILGLGD 314


>gi|156186088|gb|ABU55362.1| cell division ABC transporter periplasmic substrate-binding protein
           FtsY [Callosobruchus chinensis]
 gi|156186090|gb|ABU55363.1| cell division ABC transporter periplasmic substrate-binding protein
           FtsY [Callosobruchus chinensis]
          Length = 102

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/102 (50%), Positives = 66/102 (64%)

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ K  + G  VML A DTFR+AA  QL IWA+ +    V  E GSD+ ++A
Sbjct: 1   GKTTTIGKLAYKYKEMGKSVMLVACDTFRAAASKQLNIWAENSDCLIVTGEHGSDSPSVA 60

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
           Y A  QA    VDV++IDTAGRL NN  LM  + K+ R +K+
Sbjct: 61  YRAVSQAIKDNVDVVLIDTAGRLQNNVNLMEKLSKIYRTIKK 102


>gi|118575617|ref|YP_875360.1| signal recognition particle GTPase [Cenarchaeum symbiosum A]
 gi|118194138|gb|ABK77056.1| signal recognition particle GTPase [Cenarchaeum symbiosum A]
          Length = 397

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 135/269 (50%), Gaps = 20/269 (7%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           D+ +  +I   + ++ V E+     ++   + ++LYD    + K+L   S     +FS +
Sbjct: 2   DVRLVKEIAGRLEERCVGEVPPPGLSRKDHIVKILYDE---LAKLLGGES-----EFSFK 53

Query: 111 P---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           P   + +L++G+ G GK+T+  KL+K ++  G K  +   DT+R  A+ QL+   +R++ 
Sbjct: 54  PGRTNKVLMLGIQGSGKSTITAKLAKLLTRQGYKTGVVGADTYRPGALVQLRTMCERSNV 113

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           +    E  SDA A+     +       DV+++DTAGR H         G+++  +KR+  
Sbjct: 114 EVYGEEGESDAPAVVRRGLRHF-GDSCDVILVDTAGR-HKEE------GELLDEMKRIGK 165

Query: 228 HA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            A P   L V+D T G     Q E FH      G+++TK+D +A+GGG I         V
Sbjct: 166 AAEPDLALLVIDGTIGNRCYAQAEAFHKTVPVGGIVVTKLDSSAKGGGAIAASAATGSSV 225

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            ++G GE I+D+E F +  F   + G  D
Sbjct: 226 MYIGTGERIDDIEQFSSTRFVGRLLGMGD 254


>gi|262277884|ref|ZP_06055677.1| signal recognition particle protein [alpha proteobacterium HIMB114]
 gi|262224987|gb|EEY75446.1| signal recognition particle protein [alpha proteobacterium HIMB114]
          Length = 453

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 146/291 (50%), Gaps = 24/291 (8%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV--SV---QRVLYDVSE 90
           +  ++ D+G+R+ +   L+ SD+ ++V +K +E++  K   ++V  S+   Q ++  V++
Sbjct: 22  LDEKQADEGLRK-IRQALLESDVALSVTKKFIEDVKPKIIGQEVLKSITPGQMIIKIVND 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLA 145
            +  +L   S+  + +  + P V ILVVG+ G GKTT   KL+    KK++    KV++ 
Sbjct: 81  ELINVLG--SEKSDLNLENVPPVKILVVGLQGSGKTTSTAKLAHFLQKKLTK---KVLMT 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           + D +R AA  QL++  +      +    G     ++  A         DV+I DTAGR 
Sbjct: 136 SLDIYRPAAQQQLQVLGNDNDIKTLPIIEGQLPVEISKRALNAVSLSGEDVVIFDTAGRT 195

Query: 206 HNNSILMAGIGKMIRVLKRLDPH-APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
             +        +M+  LK+L+    PH ++ V D+ TGQ+A+   + F      + +I+T
Sbjct: 196 QIDQ-------QMMMELKQLENEIRPHEIILVADSLTGQDAVNIAQEFQKTVNLSSIILT 248

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++DG  +GG  + +      P+ FL  GE I+ LE F     +  I G  D
Sbjct: 249 RIDGDGKGGAALSMKAVTGCPIKFLATGEKIDQLETFHPDRIANRILGMGD 299


>gi|328766891|gb|EGF76943.1| hypothetical protein BATDEDRAFT_14566 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 634

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 24/207 (11%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-- 167
           RP+  + VGVNGVGK+T + K+   +     +V++AA DTFRS A++QL++      A  
Sbjct: 420 RPYTFVFVGVNGVGKSTNLSKICFWLLQNKKRVLIAACDTFRSGAVEQLRVHVKNLKALE 479

Query: 168 -----DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                D      G D AA+A EA   A  ++ D+++IDTAGR+ +N  LM  + K+I   
Sbjct: 480 KGAVVDLFDRGYGKDPAAIAKEAIAYATLERYDIVLIDTAGRMQDNEPLMRALAKLIST- 538

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQV----EMFHAVAGT------TGLIMTKMDG-TAR 271
                + P  +L V +A  G  A+ Q+    + F   +G        G+I+TK D    +
Sbjct: 539 -----NNPDKILFVGEALVGNGAVDQLTKFNQAFRDFSGMREPRQIDGMILTKFDTIDDK 593

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDL 298
            G  + +      P+ F+G G+   DL
Sbjct: 594 VGAALSMTYATGKPILFVGTGQTYTDL 620


>gi|328857956|gb|EGG07070.1| hypothetical protein MELLADRAFT_35731 [Melampsora larici-populina
           98AG31]
          Length = 601

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 146/280 (52%), Gaps = 35/280 (12%)

Query: 47  EELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-VSELIHKMLMP--- 98
           ++++  L++ ++  +VA++I +    ELL K+     S++ ++ D +S  + ++L P   
Sbjct: 314 QQMQTQLLKKNVARSVAEEICDKLGVELLGKKR-DGTSLRELVRDALSTSLRQILTPRTS 372

Query: 99  --LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             L        S +P+VI  VGVNGVGK+T + K++  +    L+V++AA DTFRS A++
Sbjct: 373 VDLLMEVRRRQSGKPYVITFVGVNGVGKSTNLAKVAFWLLQNRLRVLIAACDTFRSGAVE 432

Query: 157 QLKIWADRTSA--------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           QL+      S+        +      G DAA +A  A   A+    DV++IDTAGR+ +N
Sbjct: 433 QLRTHVRNLSSIDQPNGMVELFEKGYGKDAAGIAKAAIAHAETNGFDVVLIDTAGRMQDN 492

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA----VAGTT----- 259
             LM  +GK+I V      + P  V+ V +A  G  A+ Q++ F+      +G       
Sbjct: 493 EPLMRALGKLISV------NEPDKVIFVGEALVGNEAVDQLQGFNTSIQKFSGPISRSLD 546

Query: 260 GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           G+I+TK D    + G  + +    + P++F+G G+   DL
Sbjct: 547 GMILTKFDTIDDQVGAAVSMTFVTRQPIWFVGTGQTYTDL 586


>gi|242070027|ref|XP_002450290.1| hypothetical protein SORBIDRAFT_05g003290 [Sorghum bicolor]
 gi|241936133|gb|EES09278.1| hypothetical protein SORBIDRAFT_05g003290 [Sorghum bicolor]
          Length = 539

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 6/177 (3%)

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G   ML A D +R AAIDQL I   +           +    +   A ++A++K +D ++
Sbjct: 188 GKSCMLVAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPTQITKNAMEEAKSKNIDAIV 247

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL  +  +M  + ++ + +       P  VL V+DA TGQ A   V  F+   G 
Sbjct: 248 VDTAGRLQIDKSMMDELKEVKKAVN------PTEVLLVVDAMTGQEAAALVTTFNIEIGI 301

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG I+TK+DG +RGG  + +      P+ F+G GE + DLE F     +  + G  D
Sbjct: 302 TGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERLEDLELFYPDRMAQRVLGMGD 358


>gi|157134401|ref|XP_001663285.1| signal recognition particle 54 kda protein [Aedes aegypti]
 gi|108870487|gb|EAT34712.1| signal recognition particle 54 kda protein [Aedes aegypti]
          Length = 401

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 6/195 (3%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT   KL+        K  L   DTFR+ A DQ+K  A +    F  S    D   
Sbjct: 8   GSGKTTTCTKLAYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVV 67

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A +     + +  + +I+DT+GR      L     +M+ V   +    P +++ V+DAT
Sbjct: 68  IAQDGVDMFKKEGFEFIIVDTSGRHKQEESLFE---EMLAVATAV---KPDNIIFVMDAT 121

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ    Q + F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEP
Sbjct: 122 IGQACEAQAKAFKEKVDIGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEP 181

Query: 301 FVAKDFSAVITGCLD 315
           F  K F + + G  D
Sbjct: 182 FKTKPFISKLLGMGD 196


>gi|329766980|ref|ZP_08258508.1| signal recognition particle protein [Gemella haemolysans M341]
 gi|328837705|gb|EGF87330.1| signal recognition particle protein [Gemella haemolysans M341]
          Length = 450

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 148/305 (48%), Gaps = 20/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+  I  +    ++ +  V+E + ++   L+ +D+   V ++ V+++  +   
Sbjct: 3   FENLSQRLQNTIAKLTGKGKVSEADVKEMMREVRLALLEADVNFKVVKEFVKKISERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+++  V+E + ++L   +   N     +   +++VG+ G GKTT  GKL
Sbjct: 63  TEVMKSLTPAQQIVKIVNEELVELLGGSNVELNQ--GGKITTVMMVGLQGAGKTTTAGKL 120

Query: 132 S-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + K       K +L A D +R AA+ QLK    +   D     +  D   +  +    A+
Sbjct: 121 ALKVKKTMKKKPLLIAADVYRPAAVQQLKTLGKQL--DIEVFYVDKDPVDIVKDGLAFAK 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               + +IIDTAGRLH + +LM  + K I+         P  +L V+DA  GQ A+    
Sbjct: 179 ENYFNYVIIDTAGRLHIDELLMDEL-KDIKA-----ATTPDEILLVIDAMIGQEAVNIAS 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TGL++TK+DG  RGG  + I      P+  +G+GE +NDLE F  +  ++ I
Sbjct: 233 SFDEQLDITGLVLTKLDGDTRGGAALSIKSITGKPIKLVGMGEKMNDLEIFHPERMASRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|240047246|ref|YP_002960634.1| Signal recognition particle protein [Mycoplasma conjunctivae
           HRC/581]
 gi|239984818|emb|CAT04805.1| Signal recognition particle protein [Mycoplasma conjunctivae]
          Length = 441

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 10/204 (4%)

Query: 114 ILVVGVNGVGKTTVIGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I++VG+ G GKTT   KLS   K      K +L A D +R AAI+QLK    +   +   
Sbjct: 102 IILVGLQGSGKTTTAAKLSLFAKNKKHSQKPLLVACDIYRPAAIEQLKQLGKQIGIEVFS 161

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            +  +    +A  A + AQ    D++I DTAGRL  +  LM  +  + +++       P 
Sbjct: 162 QD--ATPQEIAKNAIQYAQDNDFDLIIFDTAGRLAIDEPLMDELVDLKKIIH------PD 213

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            +L V DA +GQ+ +   ++F+      G I+TK+D  ARGG  + I    KIP+ F+G 
Sbjct: 214 QILFVTDALSGQDVINVAQVFNDRIKLNGAIITKLDSDARGGSALSITHLLKIPINFIGS 273

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE I+ LE F     +  I G  D
Sbjct: 274 GEKISSLEIFHPNRIADRILGMGD 297


>gi|261416795|ref|YP_003250478.1| signal recognition particle protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373251|gb|ACX75996.1| signal recognition particle protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302328200|gb|ADL27401.1| signal recognition particle protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 454

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 102/206 (49%), Gaps = 8/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  I++VG+ G GKTT  GK++  M S    K +L A D +R AAI QL++         
Sbjct: 100 PVGIMMVGLQGSGKTTFAGKIALWMRSKKKRKPLLVAADVYRPAAIKQLQVLGKSIGVP- 158

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V  E   +   +    ++ A+    D++I DTAGRL  +  LM        + K  D   
Sbjct: 159 VYDEGQGNPVEIIKHGYQYAKDNGFDLVIYDTAGRLQIDEELMQ------ELEKARDAVH 212

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +L V DA  GQ A+   E F      TG+ ++KMDG  RGG  + I     +P+ F+
Sbjct: 213 PDEILFVADAMIGQEAVNVAETFWNRLNFTGVCLSKMDGDTRGGAALSIKKMTGVPICFI 272

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GVGE +N+++ F     ++ I G  D
Sbjct: 273 GVGEKLNEIDLFHPDRMASRILGMGD 298


>gi|192288677|ref|YP_001989282.1| signal recognition particle protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192282426|gb|ACE98806.1| signal recognition particle protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 516

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 137/281 (48%), Gaps = 17/281 (6%)

Query: 43  DGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKML 96
           D    E+   L+ +D+ + V     +++ E+ +     K V   +++  +   ELI  + 
Sbjct: 28  DAAMREIRRALLEADVALEVVRSFTERVREQAVGATVVKSVKPGQMVVKIVNDELIATLG 87

Query: 97  MPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAA 154
              S+  + D +  P V I++VG+ G GKTT   KL+++M++    KV++A+ D +R AA
Sbjct: 88  ---SEVQSIDLNAVPPVPIMMVGLQGSGKTTTTAKLARRMTERDKRKVLMASLDVYRPAA 144

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           ++QL +       D +    G     +A  A +  +    DV+++DTAGR   +  +MA 
Sbjct: 145 MEQLAVLGRDLQIDTLPIVAGQQPPDIARRAMEAGKLGGYDVVLLDTAGRTTLDEDMMAE 204

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
             ++           PH VL V D+ TGQ+A+     F    G TG+++T++DG  RGG 
Sbjct: 205 AAEIKAAAN------PHEVLLVADSLTGQDAVNLARAFDQRVGLTGIVLTRIDGDGRGGA 258

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + +      P+  +G GE  + LE F     ++ I G  D
Sbjct: 259 ALSMRAVTGKPIKLMGTGEKTDALEDFHPSRIASRILGMGD 299


>gi|71891959|ref|YP_277689.1| 4.5S-RNP protein [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796065|gb|AAZ40816.1| 4.5S-RNP protein [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 453

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 148/310 (47%), Gaps = 26/310 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F   S K+ + I +I+ S RL ++ ++E L  +   L+  D+ + V    V  +      
Sbjct: 2   FKKLSNKISQSIRNIVGSGRLTENNIKETLNMVKIALLEGDVALPVVHGFVNTVKEGIIG 61

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            D++  + L    E I  M   L       S   N + +  P +IL+VG  G GKTT  G
Sbjct: 62  SDIN--KHLTPGQEFIKIMHASLVKIMGEGSNDLNLN-TQTPSIILIVGAQGSGKTTTTG 118

Query: 130 KLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSE---IGSDAAALAYEA 185
           KL+K +     K + +A+ D +R A + QLK      S D +  E   + +    +   A
Sbjct: 119 KLAKFLKIKKNKKILVASTDVYRPAGVQQLKSLIK--SEDIIFFEDCNVRNKPIDILKAA 176

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              +++   DVL+IDTAG L  +  L++ + +M   +       P   L ++D+  GQ A
Sbjct: 177 SIVSRSLSYDVLLIDTAGCLETDDSLLSELAEMHSCVN------PIETLFIVDSMIGQVA 230

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +  + +F+     TG+I+TK+DG +RGG  + I      P+ F+G GE I+ LEPF +  
Sbjct: 231 INSINVFNKTLPLTGIILTKLDGDSRGGVALSIKYLTGKPIKFIGTGEKIDALEPFNSYR 290

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 291 IAGRILGMGD 300


>gi|296126133|ref|YP_003633385.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Brachyspira murdochii DSM 12563]
 gi|296017949|gb|ADG71186.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Brachyspira murdochii DSM 12563]
          Length = 451

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 12/272 (4%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPF 103
           +++ L+ +D+ +  A K +EE   +   K+         + + DV + +  M+       
Sbjct: 34  IKEALLSADVSLEAANKFLEEATNRAIGKEKIEGVEPANQFIADVHDTLVNMIGEGESGL 93

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
             +   +  + L+ G+ G GKTT   KL+K   D   +VM+   D  R AA++QL + A 
Sbjct: 94  KLEPVEKTTITLLFGLQGSGKTTTTAKLAKYYKDK-RRVMMVGLDVHRPAAMEQLAVLAR 152

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                +        A  +  +A   A+ ++ +++++DTAGRL  +  +M    ++ RV+ 
Sbjct: 153 EVGVPYHIDTKEKKAYKILKKALAIAKKEQYNMILVDTAGRLEIDENMMM---ELRRVVN 209

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             D       L V+D+T GQ+     + F +  G  G+I+TK D   RGG  + +     
Sbjct: 210 SADVTEK---LLVVDSTAGQSVYDVAKSFQSNIGINGVILTKFDSGVRGGAALSLKYATG 266

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            PV F+GVGE I+D++ F AK  +  I G  D
Sbjct: 267 SPVKFVGVGEHIDDIDVFDAKRVAGQILGMGD 298


>gi|24641198|ref|NP_524887.2| GTP-binding protein [Drosophila melanogaster]
 gi|47117334|sp|Q9U5L1|SRPR_DROME RecName: Full=Signal recognition particle receptor subunit alpha
           homolog; Short=DP-alpha; Short=Docking protein alpha;
           Short=SR-alpha; AltName: Full=GTP-binding protein
 gi|22832080|gb|AAF48002.2| GTP-binding protein [Drosophila melanogaster]
 gi|201065707|gb|ACH92263.1| FI05231p [Drosophila melanogaster]
          Length = 614

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 41/288 (14%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP--- 98
           E++ D LI  ++   +A K+ + +      K     D    +V   ++E + ++L P   
Sbjct: 320 EKMRDHLISKNVASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRR 379

Query: 99  ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              +        + RP+ I+  GVNGVGK+T + K+   + +    V++AA DTFR+ A+
Sbjct: 380 IDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAV 439

Query: 156 DQLKIWADRTSADFVCSE-------------IGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +QL+      +A    ++              G DAA +A EA K A   +VDV+++DTA
Sbjct: 440 EQLRTHTRHLNALHPAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTA 499

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT-- 259
           GR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+ ++A  +  
Sbjct: 500 GRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSN 553

Query: 260 -------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
                  G+++TK D    + G  I +      P+ F+G G+   DL+
Sbjct: 554 ENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK 601


>gi|296116586|ref|ZP_06835196.1| signal recognition particle protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976798|gb|EFG83566.1| signal recognition particle protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 453

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 8/215 (3%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKI 160
           P N + +  P  IL+VG+ G GKTT  GK++ +++     KV+LA+ DT R AA  QL+ 
Sbjct: 82  PLNLNAAA-PVPILMVGLQGSGKTTTSGKIALRLATRERRKVLLASLDTQRPAAQLQLQQ 140

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A+R     +    G     +A  A +  + +  D++I+DTAGRL  +  LM  + + IR
Sbjct: 141 LAERAGVASLPIIAGQSPVEIARRAMEVGRREGYDIVILDTAGRLSIDEALMDEV-RAIR 199

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
              +     P   L V+DA TGQ+A+   + F+   G TG++MT+MDG ARGG  + +  
Sbjct: 200 AETQ-----PAETLLVVDAMTGQDAVNTAKAFNEAVGVTGVVMTRMDGDARGGAALSMRA 254

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+   G GE ++ LE F  +  +  I G  D
Sbjct: 255 ITGAPIKLTGSGEKLDALEEFHPERVAGRILGLGD 289


>gi|31544492|ref|NP_853070.1| signal recognition particle protein Ffh [Mycoplasma gallisepticum
           str. R(low)]
 gi|31541337|gb|AAP56638.1| signal recognition particle protein Ffh [Mycoplasma gallisepticum
           str. R(low)]
 gi|284930548|gb|ADC30487.1| signal recognition particle protein Ffh [Mycoplasma gallisepticum
           str. R(high)]
          Length = 451

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 8/203 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCS 172
           I++VG+ G GKTT + KL+K ++    K  L  G D +R AAIDQL   A++ +  F  +
Sbjct: 109 IMLVGLQGSGKTTTVAKLAKFLNKQKQKNSLLVGLDVYRPAAIDQLNTLAEQINMPF-YN 167

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E  SD    A  + + A+ K  D++I DTAGRL  N  LM    +++ +   +DP     
Sbjct: 168 EGLSDPVKTAKNSIEIAKEKNCDLIIYDTAGRLQTNVELM---NELVNIRNTVDPD---E 221

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           ++ V+D  +GQ  +     F+     +G+I+TK+D  AR G  + +     +P+ F   G
Sbjct: 222 IILVVDGLSGQEIINIATEFNNYLKLSGIIITKLDSDARAGAALSLRSILNVPIKFTTSG 281

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E ++ +E F  +  +  I G  D
Sbjct: 282 EKLDAIELFYPERIADRILGFGD 304


>gi|115951464|ref|XP_001188635.1| PREDICTED: similar to signal recognition particle receptor alpha
           subunit (sr-alpha), partial [Strongylocentrotus
           purpuratus]
          Length = 584

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 132/271 (48%), Gaps = 44/271 (16%)

Query: 35  IISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVS 89
           ++ S+ LD      V +++ D L   ++   +A+K+ E + TK   K + +  RV   V 
Sbjct: 315 LVGSKTLDKETMAPVLDKMRDHLTAKNVARDIAEKLCESVATKLEGKVLGTFGRVTSVVK 374

Query: 90  ELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           E + + L+ +  P                ++P  I   GVNGVGK+T + K+   + + G
Sbjct: 375 ETLQESLVQILSPRRRVDILRDALEAKARNKPFSITFCGVNGVGKSTNLAKICFWLIENG 434

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAF 186
            +V++AA DTFR+ A++QL+      +A                    G DAA +A EA 
Sbjct: 435 FRVLIAACDTFRAGAVEQLRTHERHLNALHPAEKHGGHAPVQLYEKGYGKDAAGIAMEAI 494

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K A+  + DV++IDTAGR+ +N  LM  + K+I+V      + P  VL V +A  G  A+
Sbjct: 495 KFARDYRFDVVLIDTAGRMQDNEPLMRALSKLIKV------NRPDLVLFVGEALVGNEAV 548

Query: 247 RQVEMF-HAVAGTT---------GLIMTKMD 267
            Q+  F HA+A  +         G+++TK D
Sbjct: 549 DQLTKFNHALADFSDSDDPRLIDGIVLTKFD 579


>gi|58038679|ref|YP_190643.1| Signal recognition particle protein [Gluconobacter oxydans 621H]
 gi|58001093|gb|AAW59987.1| Signal recognition particle protein [Gluconobacter oxydans 621H]
          Length = 475

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 140/277 (50%), Gaps = 23/277 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV--------SVQRVLYDVSELIHKMLMPLSKPFN 104
           ++ +D+ + V +  V ++  +   ++V        +V +++ D   LI  +    + P N
Sbjct: 38  MLEADVALPVVRDFVNKVRERSVGQEVLESVSPGQAVAKIVNDA--LIDALGGAGAVPLN 95

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWAD 163
              ++ P  +L+VG+ G GKTT  GK++ ++S     KV+LA+ D  R AA  QL+  A+
Sbjct: 96  LS-ANPPVPVLMVGLQGSGKTTTSGKIALRLSGRENKKVLLASLDVQRPAAQLQLQQLAE 154

Query: 164 RTSADFVCSEI-----GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           R +A     +      G     +A  A +  + +  DV+I+DTAGRL  +  LM  + + 
Sbjct: 155 RVNAKTGRVQALPIISGQSPVQIAKRALETGRLEGYDVVILDTAGRLSIDEALMDEV-RE 213

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           IR L +     P   L V+DA TGQ+A+   + F+   G TG++M++MDG ARGG  + +
Sbjct: 214 IRTLTK-----PAETLLVVDAMTGQDAVNTAKAFNEAVGITGVVMSRMDGDARGGAALSM 268

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                 P+   G GE +  LE F  +  +  I G  D
Sbjct: 269 KAITGAPIKLTGSGENLEALEEFHPERVAGRILGLGD 305


>gi|317495250|ref|ZP_07953620.1| signal recognition particle protein [Gemella moribillum M424]
 gi|316914672|gb|EFV36148.1| signal recognition particle protein [Gemella moribillum M424]
          Length = 450

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 20/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+  I  +    ++ +  V+E + ++   L+ +D+   V +  V+++  +   
Sbjct: 3   FENLSERLQNTIAKLTGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKKISERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+++  V+E + ++L   +   N     +    ++VG+ G GKTT  GKL
Sbjct: 63  TEVMKSLTPAQQIVKIVNEELVELLGGTNVELNQ--GGKITTTMMVGLQGAGKTTTAGKL 120

Query: 132 S-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + K       K +L A D +R AA+ QLK    +   D     +  D   +  E  + A+
Sbjct: 121 ALKVKKTMKKKPLLIAADVYRPAAVQQLKTLGKQL--DIEVFYVDKDPVDIVKEGLEFAR 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               + +IIDTAGRLH + +LM  +  +   +       P  +L V+DA  GQ A+    
Sbjct: 179 EHYYNYVIIDTAGRLHIDELLMDELKDIKSAVN------PDEILLVVDAMIGQEAVNIAT 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TGL++TK+DG  RGG  + I      P+  +G+GE +NDLE F  +  ++ I
Sbjct: 233 SFDEQLDITGLVLTKLDGDTRGGAALSIKSITGKPIKLVGMGEKMNDLELFHPERMASRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|313623288|gb|EFR93529.1| signal recognition particle protein [Listeria innocua FSL J1-023]
          Length = 415

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 108/211 (51%), Gaps = 17/211 (8%)

Query: 111 PHVILVVGVNGVGKTTV----IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           P VI++VG+ G GKTT        L KK +    K +L A D +R AAI QL+    +  
Sbjct: 66  PTVIMMVGLQGAGKTTTSXXXANLLRKKYNR---KPLLVAADIYRPAAIKQLETLGKQL- 121

Query: 167 ADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            D     +G   +   +A +A  +A+ + +D +IIDTAGRLH +  LM  + ++  +   
Sbjct: 122 -DMPVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI--- 177

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I      
Sbjct: 178 ---ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGK 234

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+  GE +  +E F     ++ I G  D
Sbjct: 235 PIKFVATGEKMEAIETFHPDRMASRILGMGD 265


>gi|159467803|ref|XP_001692081.1| alpha subunit of the SRP receptor [Chlamydomonas reinhardtii]
 gi|158278808|gb|EDP04571.1| alpha subunit of the SRP receptor [Chlamydomonas reinhardtii]
          Length = 687

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 113/232 (48%), Gaps = 43/232 (18%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+VI+  GVNGVGK+T + K++  +    +KVM+AA DTFR+ A++QLK    R     
Sbjct: 454 KPYVIVFCGVNGVGKSTNLAKIAYWLGSHNIKVMIAACDTFRAGAVEQLKTHCARLRVPL 513

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D A +AYEA +QA+   V V+++DTAGR+ +N  LM  +  +I +      + 
Sbjct: 514 YERGYEKDPAKVAYEAVRQAEKDGVHVVLVDTAGRMQDNQPLMRALSTLISL------NN 567

Query: 230 PHSVLQVLDATTGQNALRQVEMFHA----VAGTT-------------------------- 259
           P+ VL V +A  G +A+ Q+  F+     +A TT                          
Sbjct: 568 PNLVLFVGEALVGNDAVDQLTKFNKSLSDLAPTTAGAGGPGEGTGAVGRGQADGSALTRR 627

Query: 260 ------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                 G+++TK D    + G  + +V T   PV F+G G+   DL+    K
Sbjct: 628 HGGVIDGIVLTKFDTIDEKVGAALSMVYTSGAPVMFVGCGQTYVDLKKLNVK 679


>gi|302753916|ref|XP_002960382.1| hypothetical protein SELMODRAFT_75660 [Selaginella moellendorffii]
 gi|300171321|gb|EFJ37921.1| hypothetical protein SELMODRAFT_75660 [Selaginella moellendorffii]
          Length = 633

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 133/296 (44%), Gaps = 52/296 (17%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPF---- 103
           L+D L+  ++   +A+KI E +      K + +  RV   V E +   L+ +  P     
Sbjct: 330 LKDRLMTKNVAEEIAEKICESVAASLLGKKLGTFTRVSSAVKEAMGDALLRILTPKRSID 389

Query: 104 ------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                 +     RP+VI+ VGVNGVGK+T + K++  +    L V++AA DTFRS A++Q
Sbjct: 390 ILRDVKSAKDEGRPYVIVFVGVNGVGKSTSLAKVAYWLKSHELSVLIAACDTFRSGAVEQ 449

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL------------ 205
           L+  A R            D A +A EA   A   K DV+++DTAGR+            
Sbjct: 450 LRTHAKRLQTTLYEKGYEKDPANVAREAIATAAKTKHDVVLVDTAGRMQASFSKLCFSLF 509

Query: 206 ------------HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
                        +N  LM  +  +I V K      P  VL V +A  G  A+ Q+  F+
Sbjct: 510 SLRSYNTYVFFFQDNEPLMRALANLINVNK------PDLVLFVGEALVGNEAVDQLSKFN 563

Query: 254 A----VAGTT------GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
                ++ T       G+++TK D    + G  + +V     P+ FLG G+  +DL
Sbjct: 564 QTLADLSATAKRKPIDGILLTKFDTIDDKVGAALSMVYVSGAPIMFLGCGQSYHDL 619


>gi|229824955|ref|ZP_04451024.1| hypothetical protein GCWU000182_00304 [Abiotrophia defectiva ATCC
           49176]
 gi|229790958|gb|EEP27072.1| hypothetical protein GCWU000182_00304 [Abiotrophia defectiva ATCC
           49176]
          Length = 446

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 143/309 (46%), Gaps = 19/309 (6%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S   KLTK F +   K K    D+ ++ +       E++  L+ +D+   VA+  ++ + 
Sbjct: 5   SLTEKLTKVFKNLRGKGKLNENDVKAALK-------EVKIALLEADVNFKVAKNFIKTVE 57

Query: 72  TKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +   +DV       Q V+  V+E +  +L           +    VI++ G+ G GKTT
Sbjct: 58  ERAIGQDVMNSLTPGQMVIKIVNEEMTALLGSEKTELTLKPTQEITVIMMCGLQGAGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              K++ K      K +L A D +R AAI QL++  ++          G     +A  A 
Sbjct: 118 TTAKIAAKFK-GTRKPLLVACDVYRPAAIKQLQVNGEKVGVPVFTMGDGHKPPNIAKAAI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+    +++ +DTAGRL  +  +M    +++ + + +D       L V+DA TGQ A+
Sbjct: 177 EHAKNNDYNMIFLDTAGRLQIDEDMMQ---ELVDIKEAVDVT---QTLLVVDAMTGQEAV 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F +     G+++TK+DG  RGG  + I      P+ + G+GE ++DLE F     
Sbjct: 231 NVATTFDSKIELDGVVLTKLDGDTRGGAALSIRSVTGKPILYAGMGEKLSDLEQFYPDRM 290

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 291 ANRILGMGD 299


>gi|284931538|gb|ADC31476.1| signal recognition particle protein Ffh [Mycoplasma gallisepticum
           str. F]
          Length = 451

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 8/203 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCS 172
           I++VG+ G GKTT + KL+K ++    K  L  G D +R AAIDQL   A++ +  F  +
Sbjct: 109 IMLVGLQGSGKTTTVAKLAKFLNKQKQKNSLLVGLDVYRPAAIDQLNTLAEQINMPF-YN 167

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E  SD    A  + + A+ K  D++I DTAGRL  N  LM    +++ +   +DP     
Sbjct: 168 EGLSDPVKTAKNSIEIAKEKNCDLIIYDTAGRLQTNVELM---NELVNIRNTVDPD---E 221

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           ++ V+D  +GQ  +     F+     +G+I+TK+D  AR G  + +     +P+ F   G
Sbjct: 222 IILVVDGLSGQEIINIATEFNNYLKLSGIIITKLDSDARAGAALSLRSILNVPIKFTTSG 281

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E ++ +E F  +  +  I G  D
Sbjct: 282 EKLDAIELFYPERIADRILGFGD 304


>gi|284032661|ref|YP_003382592.1| signal recognition particle protein [Kribbella flavida DSM 17836]
 gi|283811954|gb|ADB33793.1| signal recognition particle protein [Kribbella flavida DSM 17836]
          Length = 537

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 134/282 (47%), Gaps = 16/282 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V ++ +  +  +    +V       Q+V+  V+E +  +L 
Sbjct: 40  DATAREIRIALLEADVALPVVKEFIAAVKERASGAEVRGGLNPAQQVIKIVNEELVTILG 99

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTFRSAAID 156
             ++         P VI++ G+ G GKTT+ GKL+K + +   +  ML A D  R  A+ 
Sbjct: 100 GATRELRM-AKKPPTVIMLAGLQGAGKTTLAGKLAKWLKETRHQTPMLVAADLQRPNAVT 158

Query: 157 QLKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           QL++   R        E G+   D   +A  A  +A+ K+  V+I+DTAGRL  +  LM 
Sbjct: 159 QLQVVGQRAGVPVFAPEPGNGVGDPVEVARRAMDEARTKQHSVVIVDTAGRLGVDEELMK 218

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
                IR     D  +P  +L V+DA  GQ+A+   + F    G  G++++K+DG ARGG
Sbjct: 219 QAAD-IR-----DAVSPDEILFVVDAMIGQDAVTTAQAFLDGVGFDGVVLSKLDGDARGG 272

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I       V F   GE + D + F     ++ I G  D
Sbjct: 273 AALSIAQVTGRQVMFASNGEKLEDFDVFHPDRMASRILGMGD 314


>gi|91762614|ref|ZP_01264579.1| signal recognition particle protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718416|gb|EAS85066.1| signal recognition particle protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 452

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 143/294 (48%), Gaps = 14/294 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT  F      LK+  +  +  +++D+G+R  +   L+ +D+ + VA+  + ++  
Sbjct: 1   MFENLTNKFEEIFSSLKKAPS--LDEKQVDEGLRA-IRQALLEADVSLDVAKDFITKVKP 57

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVI 128
           K   +++       D V ++++  L+ L    N D +     P  +++VG+ G GKTT  
Sbjct: 58  KVLGQEIIRSTSPGDMVVKIVYDELVSLLGESNTDINLNAVPPVPMMLVGLQGSGKTTTT 117

Query: 129 GKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            KL+K +     K +M+ + D +R AA +QL+   ++ +   +    G   A +   A  
Sbjct: 118 AKLAKYLEKNKKKKIMMVSLDVYRPAAQEQLRSLGEQNNILTLPIIEGQLPADICRRAVS 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A     ++++ DTAGR   +  +M+ I ++  ++       P     V D+ TGQ A  
Sbjct: 178 AASLNGAEIILFDTAGRTQIDLQMMSEIKQIENIIN------PTETFLVADSLTGQVAAE 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             + F      TG+++T+ DG ARGG  + +    ++P+ FLGVGE I +LE F
Sbjct: 232 VAKEFKNTVNLTGIVLTRADGDARGGAALSMKYVSQVPIKFLGVGEKIENLEVF 285


>gi|71082962|ref|YP_265681.1| signal recognition particle protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062075|gb|AAZ21078.1| signal recognition particle protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 452

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 143/294 (48%), Gaps = 14/294 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT  F      LK+  +  +  +++D+G+R  +   L+ +D+ + VA+  + ++  
Sbjct: 1   MFENLTNKFEEIFSSLKKAPS--LDEKQVDEGLRA-IRQALLEADVSLDVAKDFIAKVKP 57

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVI 128
           K   +++       D V ++++  L+ L    N D +     P  +++VG+ G GKTT  
Sbjct: 58  KVLGQEIIRSTSPGDMVVKIVYDELVSLLGESNTDINLNAVPPVPMMLVGLQGSGKTTTT 117

Query: 129 GKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            KL+K +     K +M+ + D +R AA +QL+   ++ +   +    G   A +   A  
Sbjct: 118 AKLAKYLEKNKKKKIMMVSLDVYRPAAQEQLRSLGEQNNILTLPIIEGQLPADICRRAVS 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A     ++++ DTAGR   +  +M+ I ++  ++       P     V D+ TGQ A  
Sbjct: 178 AASLNGAEIILFDTAGRTQIDLQMMSEIKQIENIIN------PTETFLVADSLTGQVAAE 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
             + F      TG+++T+ DG ARGG  + +    ++P+ FLGVGE I +LE F
Sbjct: 232 VAKEFKNTVNLTGIVLTRADGDARGGAALSMKYVSQVPIKFLGVGEKIENLEVF 285


>gi|319406337|emb|CBI79974.1| signal recognition particle protein [Bartonella sp. AR 15-3]
          Length = 519

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 13/209 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADR---TS 166
           P V+++VG+ G GKTT   KL+K+++D    KV++A+ DT R AA +QL+   ++    S
Sbjct: 100 PVVVMLVGLQGSGKTTTTAKLAKRLTDKHNKKVLMASLDTRRPAAQEQLRQLGEQVQIAS 159

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              V  +   D +A A +A   A+    DV+++DTAGR H +  LM  + K I+   +  
Sbjct: 160 LPVVPDQSAVDISARAVQA---AKLGGYDVVLLDTAGRNHIDEALMLEL-KEIKASSK-- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+ ++ V D+ TGQ+A+     F    G TG+I+T+M+   RGG  + +      P+
Sbjct: 214 ---PYEIMLVADSLTGQDAVNLARSFDERIGITGIILTRMESDGRGGAALSMRAVTGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             +G GE +  LE F  +  +  I G  D
Sbjct: 271 KAIGTGEKMEALEEFHPRRIADRILGMGD 299


>gi|123473765|ref|XP_001320069.1| SRP54-type protein [Trichomonas vaginalis G3]
 gi|121902866|gb|EAY07846.1| SRP54-type protein, putative [Trichomonas vaginalis G3]
          Length = 533

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 101/201 (50%), Gaps = 18/201 (8%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD- 168
           +P+V   +GVNGVGK+T + K++  M     KV++   DTFRS A+ QL   A+R   + 
Sbjct: 323 KPYVFSFIGVNGVGKSTTLAKVAYLMKSHDFKVLIVGCDTFRSGAVKQLAEHAERLGIEL 382

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F       D   +A +A + A  KK+DV+++DTAGR+ N+  LM  I ++I  +K     
Sbjct: 383 FQRGNDRRDPVPVAKDAIQYAIDKKIDVVLVDTAGRMQNSEGLMKQIARLINEVK----- 437

Query: 229 APHSVLQVLDATTGQNALRQVEMFHA----------VAGTTGLIMTKMDGT-ARGGGLIP 277
            P   L V +A  G N   Q+  F              G  G+++TK D    + G  + 
Sbjct: 438 -PDLSLFVAEALVGGNGSDQISSFDMNLKRYAGVKDAKGIDGIVLTKFDTIDDKVGAALT 496

Query: 278 IVVTHKIPVYFLGVGEGINDL 298
           +V     P+ +LGVG+   DL
Sbjct: 497 LVYETGHPIIYLGVGQTYRDL 517


>gi|156847719|ref|XP_001646743.1| hypothetical protein Kpol_1023p54 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117423|gb|EDO18885.1| hypothetical protein Kpol_1023p54 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 612

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 56/305 (18%)

Query: 48  ELEDLLIRSDIGVAVA----QKIVEELLTKRYAKDVSVQRVLYD-------------VS- 89
           +L+D LI  ++    A    Q++  +L+  + A   SV+   ++             VS 
Sbjct: 308 KLKDQLITKNVAPEAADFLTQQVSRDLVGSKTANWTSVENAAHESLTKAITQILTPGVSV 367

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           +L+H++    S+P   D    P+V  VVGVNGVGK+T + KL+  +    LKV++ A DT
Sbjct: 368 DLLHQIQKKTSQP-GPDGKKVPYVFSVVGVNGVGKSTNLSKLAFWLLQNNLKVLIVACDT 426

Query: 150 FRSAAIDQLKIWAD-------------------RTSADFV----CSEIGSD-AAALAYEA 185
           FRS A++QL++  +                   ++  D+V        GSD    +A +A
Sbjct: 427 FRSGAVEQLRVHVENLAQLTDESHVRGSKNKRGKSGNDYVELFEAGYGGSDLVTKIAKQA 486

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K A     D++++DTAGR HN++ LM+ +       K      P  ++ V +A  G ++
Sbjct: 487 IKYASDNDFDIVLMDTAGRRHNDATLMSPLKSFAEQAK------PDKIIMVGEALVGTDS 540

Query: 246 LRQVEMFHAVAGTTG----LIMTKMDGTARG--GGLIPIVVTHKIPVYFLGVGEGINDLE 299
           ++Q + F+   G        I++K D T  G  G ++ +V    IP+ F+GVG+   DL 
Sbjct: 541 VQQAKNFNNAFGKNRNLDFFIVSKCD-TVGGMLGTMVNMVYATGIPILFVGVGQTYTDLR 599

Query: 300 PFVAK 304
               K
Sbjct: 600 TLSVK 604


>gi|118351025|ref|XP_001008791.1| SRP54-type protein, GTPase domain containing protein [Tetrahymena
           thermophila]
 gi|89290558|gb|EAR88546.1| SRP54-type protein, GTPase domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 618

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 42/276 (15%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSV--QRVLYDVSELIHKMLMP--- 98
           ++ ++ L+  ++G  +AQ++ + +   L    AK +++  + V   + + I K+L P   
Sbjct: 337 DKFKEQLMNKNVGEQIAQQLCDSIKKNLINTQAKALTLLNKTVKESLQDAISKILTPKRN 396

Query: 99  ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              +++        +P++I  +GVNGVGK+T + K++      G  VM AA D FR+ A+
Sbjct: 397 IDIIAEAMRSREKGKPYIITFIGVNGVGKSTNLAKVAYLFKKEGFSVMFAACDNFRAGAV 456

Query: 156 DQLKIWADRTSADFVCSEI-------GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           +Q+K           C EI         + A +A++A ++AQAKKVDVL+IDTAGR+ +N
Sbjct: 457 EQIKTHG-------RCLEIPVFDRGYKDEPADIAFQAIREAQAKKVDVLLIDTAGRMQDN 509

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA----------VAGT 258
             LM  +  ++        + P  ++ + +A  G +   Q+  F+           +   
Sbjct: 510 EPLMKQLSTLVV------QNNPDLIVFIGEALVGNDGTDQLMKFNKALIDLSPKDRIREI 563

Query: 259 TGLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGE 293
             +I++K D    + G  + +      P+ F GVG+
Sbjct: 564 DAIILSKFDTVDDKVGAALSMTYNTGKPILFCGVGQ 599


>gi|115702556|ref|XP_797190.2| PREDICTED: similar to signal recognition particle receptor alpha
           subunit (sr-alpha), partial [Strongylocentrotus
           purpuratus]
          Length = 563

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 133/271 (49%), Gaps = 44/271 (16%)

Query: 35  IISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVS 89
           ++ S+ LD      V +++ D L   ++   +A+K+ E + TK   K + +  RV   V 
Sbjct: 294 LVGSKTLDKETMAPVLDKMRDHLTAKNVARDIAEKLCESVATKLEGKVLGTFGRVTSVVK 353

Query: 90  ELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           E + + L+ +  P                ++P  I   GVNGVGK+T + K+   + + G
Sbjct: 354 ETLQESLVQILSPRRRVDILRDALEAKARNKPFSITFCGVNGVGKSTNLAKICFWLIENG 413

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-------------IGSDAAALAYEAF 186
            +V++AA DTFR+ A++QL+      +A     +              G DAA +A EA 
Sbjct: 414 FRVLIAACDTFRAGAVEQLRTHERHLNALHPAEKHGGHAPVQLYEKGYGKDAAGIAMEAI 473

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K A+  + DV++IDTAGR+ +N  LM  + K+I+V      + P  VL V +A  G  A+
Sbjct: 474 KFARDYRFDVVLIDTAGRMQDNEPLMRALSKLIKV------NRPDLVLFVGEALVGNEAV 527

Query: 247 RQVEMF-HAVAGTT---------GLIMTKMD 267
            Q+  F HA+A  +         G+++TK D
Sbjct: 528 DQLTKFNHALADFSDSDDPRLIDGIVLTKFD 558


>gi|189219288|ref|YP_001939929.1| Signal recognition particle GTPase [Methylacidiphilum infernorum
           V4]
 gi|189186146|gb|ACD83331.1| Signal recognition particle GTPase [Methylacidiphilum infernorum
           V4]
          Length = 440

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 120/260 (46%), Gaps = 8/260 (3%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIH-KMLMPLSK 101
           G   E+   L+ SD+ V V ++I EE+  K   K V    R      ++ H +++  L  
Sbjct: 33  GAIREIRLALLASDVHVQVVKEICEEVKQKSLGKKVLETIRPGDQFIKIFHDELIQYLEA 92

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
             N   + RP  IL+ G+NG GKTT   KL+        +V L A D  R AAI QL   
Sbjct: 93  DKNGLSTDRPLRILLCGLNGSGKTTTAAKLALWCKKNRERVGLVAADLTRPAAIAQLSKL 152

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A +  A     +              ++   ++ V+I DTAGRL  +  L+  +  +  +
Sbjct: 153 ASQVGAPVYSPQEAEKLDDFLLRVATESVQDRLSVVIYDTAGRLDLDDELLEELHHIYEL 212

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +      +P  VL V+D+ TGQ  +  V  F      TGLI++K DG ARGG    +   
Sbjct: 213 V------SPQEVLIVIDSATGQKGVDVVAAFRQKIPLTGLILSKFDGDARGGAAFSVKKV 266

Query: 282 HKIPVYFLGVGEGINDLEPF 301
             +P+ F+G GE I  LE F
Sbjct: 267 TGVPILFMGTGEKIESLEVF 286


>gi|241890047|ref|ZP_04777345.1| signal recognition particle protein [Gemella haemolysans ATCC
           10379]
 gi|241863669|gb|EER68053.1| signal recognition particle protein [Gemella haemolysans ATCC
           10379]
          Length = 450

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 20/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+  I  +    ++ +  V+E + ++   L+ +D+   V ++ V+++  +   
Sbjct: 3   FENLSERLQNTIAKLTGKGKVSEADVKEMMREVRLALLEADVNFKVVKEFVKKISERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V+E +  +L   +   N     +   +++VG+ G GKTT  GKL
Sbjct: 63  TEVMKSLTPAQQVVKIVNEELVDLLGGSNVELNQ--GGKITTVMMVGLQGAGKTTTAGKL 120

Query: 132 S-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + K       K +L A D +R AA+ QLK    +   D     +  D   +  +    A+
Sbjct: 121 ALKVKKTMKKKPLLIAADVYRPAAVQQLKTLGKQL--DIEVFYVDKDPVDIVKDGLAFAK 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               + +IIDTAGRLH + +LM  + K I+         P  +L V+D+  GQ A+    
Sbjct: 179 ENYFNYVIIDTAGRLHIDELLMDEL-KNIKA-----ATTPDEILLVVDSMIGQEAVNIAT 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TGL++TK+DG  RGG  + I      P+  +G+GE +NDLE F  +  ++ I
Sbjct: 233 SFDEQLDITGLVLTKLDGDTRGGAALSIKSITGKPIKLVGMGEKMNDLELFHPERMASRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|71005446|ref|XP_757389.1| hypothetical protein UM01242.1 [Ustilago maydis 521]
 gi|46096616|gb|EAK81849.1| hypothetical protein UM01242.1 [Ustilago maydis 521]
          Length = 705

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 106/214 (49%), Gaps = 32/214 (14%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA---DRTSA 167
           P+ I  VGVNGVGK+T + K+   +    L+V++AA DTFR+ A++QL++      +   
Sbjct: 483 PYSICFVGVNGVGKSTNLAKVCFWLLQNRLRVLIAACDTFRAGAVEQLRVHVRNLGQLRV 542

Query: 168 DFVCSE------------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           D V  E             G DAA +A +A   A+A+  DV++IDTAGR+ +N  LM  +
Sbjct: 543 DGVALEEQKGHIELYERGYGKDAAGIAKDALSYAKAEGFDVVLIDTAGRMQDNEPLMRAL 602

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV----------AGTTGLIMTK 265
            K++ V      + P  ++ V +A  G  A+ Q+  F              G  G ++TK
Sbjct: 603 AKLVSV------NRPDKIIFVGEALVGNEAVDQITKFDGAMKDFSGVSNPRGLDGSLLTK 656

Query: 266 MDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            D    + G  +       +P+YFLG G+   DL
Sbjct: 657 WDTVDDKVGTALTTTSATGLPIYFLGTGQTYTDL 690


>gi|229019040|ref|ZP_04175881.1| Signal recognition particle protein [Bacillus cereus AH1273]
 gi|228742280|gb|EEL92439.1| Signal recognition particle protein [Bacillus cereus AH1273]
          Length = 316

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 10/175 (5%)

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIID 200
           ML A D +R AAI QL+    +   D     +G   +   +A +A  +A+    D ++ID
Sbjct: 1   MLVAADIYRPAAIKQLETLGKQL--DMPVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLID 58

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   + FH   G TG
Sbjct: 59  TAGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTG 112

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +++TK+DG  RGG  + I      P+ F G+GE ++ +E F  +  ++ I G  D
Sbjct: 113 VVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASRILGMGD 167


>gi|58699702|ref|ZP_00374368.1| signal recognition particle protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58533780|gb|EAL58113.1| signal recognition particle protein [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 230

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTK----RYAKDVS-VQRVLYDVSELIHKMLMPLSKP 102
           E+   LI +D+ + VA+K + ++  K    +  K VS  Q ++  V + +  +L      
Sbjct: 3   EIRIALIEADVSLEVAKKFINDIKDKVIGEKVIKSVSPAQMIIKIVQDNLVAVLGSEKSD 62

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            N      P VI++VG+ G GKTT  GKL+ K+     KVMLA+ D +R AA  QL++  
Sbjct: 63  LNLAVKP-PAVIMMVGLQGAGKTTTSGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLG 121

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +     +   I      +   A   A+    DVLI+DTAGRLH ++ +M      ++ +
Sbjct: 122 KQIDVQTLPVVIDEKPITITKRALAAAKNDNYDVLILDTAGRLHIDNNMM----NELKAV 177

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           K +   +P  V+ V DA  GQ+A+   + F+ V G TG+I+T++DG ARGG 
Sbjct: 178 KEI--ASPAEVILVADAMIGQDAVNIAKSFNEVIGVTGIILTRVDGDARGGA 227


>gi|296504340|ref|YP_003666040.1| signal recognition particle protein [Bacillus thuringiensis BMB171]
 gi|296325392|gb|ADH08320.1| signal recognition particle protein [Bacillus thuringiensis BMB171]
          Length = 316

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 10/175 (5%)

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIID 200
           ML A D +R AAI QL+    +   D     +G   +   +A +A  +A+    D ++ID
Sbjct: 1   MLVAADIYRPAAIKQLETLGKQL--DMPVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLID 58

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   + FH   G TG
Sbjct: 59  TAGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTG 112

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +++TK+DG  RGG  + I      P+ F G+GE ++ +E F  +  ++ I G  D
Sbjct: 113 VVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASRILGMGD 167


>gi|299142906|ref|ZP_07036033.1| signal recognition particle protein [Prevotella oris C735]
 gi|298575635|gb|EFI47514.1| signal recognition particle protein [Prevotella oris C735]
          Length = 449

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 101/192 (52%), Gaps = 7/192 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+  + +   K  L  A D +R AAI+QLK+  ++     
Sbjct: 99  PAVILMSGLQGSGKTTFSGKLANLLKNKKNKKPLLVACDVYRPAAIEQLKVVGEQIGVPV 158

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D   +A  A ++A+AK  DV+I+DTAGRL  +  +M  I  +   L       
Sbjct: 159 YSEPESKDVLTIANNAVREAKAKGNDVVIVDTAGRLAVDEEMMTEIANLKNALH------ 212

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I      P+ F+
Sbjct: 213 PDETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFV 272

Query: 290 GVGEGINDLEPF 301
           G GE +  ++ F
Sbjct: 273 GTGEKMEAIDAF 284


>gi|281424055|ref|ZP_06254968.1| signal recognition particle protein [Prevotella oris F0302]
 gi|281401838|gb|EFB32669.1| signal recognition particle protein [Prevotella oris F0302]
          Length = 449

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 101/192 (52%), Gaps = 7/192 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADF 169
           P VIL+ G+ G GKTT  GKL+  + +   K  L  A D +R AAI+QLK+  ++     
Sbjct: 99  PAVILMSGLQGSGKTTFSGKLANLLKNKKNKKPLLVACDVYRPAAIEQLKVVGEQIGVPV 158

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D   +A  A ++A+AK  DV+I+DTAGRL  +  +M  I  +   L       
Sbjct: 159 YSEPESKDVLTIANNAVREAKAKGNDVVIVDTAGRLAVDEEMMTEIANLKNALH------ 212

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  + I      P+ F+
Sbjct: 213 PDETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFV 272

Query: 290 GVGEGINDLEPF 301
           G GE +  ++ F
Sbjct: 273 GTGEKMEAIDAF 284


>gi|89891049|ref|ZP_01202557.1| Signal recognition protein [Flavobacteria bacterium BBFL7]
 gi|89516693|gb|EAS19352.1| Signal recognition protein [Flavobacteria bacterium BBFL7]
          Length = 442

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 7/212 (3%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
            + +  P VIL+ G+ G GKTT  GKL+  + +    + +L A D +R AAIDQL +  +
Sbjct: 93  LNLTGNPTVILMSGLQGSGKTTFSGKLANFLKTKKSKRPLLVACDIYRPAAIDQLHVVGE 152

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
               +   +    D   ++  A   A+    +V+IIDTAGRL  +  +M  I  +   +K
Sbjct: 153 SVGVEVFSNRDEKDPVKISEAAIAHAKQNGFNVVIIDTAGRLAVDEEMMTEIANVHAAVK 212

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P   L V+D+ TGQ+A+   + F+      G+I+TK+DG  RGG  + I     
Sbjct: 213 ------PQETLFVVDSMTGQDAVNTAKAFNERLNFDGVILTKLDGDTRGGAALSIKSVVD 266

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+G GE +  ++ F     +  I G  D
Sbjct: 267 KPIKFIGTGEKMEAIDVFYPSRMADRILGMGD 298


>gi|162148863|ref|YP_001603324.1| signal recognition particle protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545388|ref|YP_002277617.1| signal recognition particle protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787440|emb|CAP57035.1| putative signal recognition particle protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533065|gb|ACI53002.1| signal recognition particle protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 461

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 111/215 (51%), Gaps = 8/215 (3%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKI 160
           P N + +  P  IL+VG+ G GKTT  GK++ +++    K V+LA+ DT R AA  QL+ 
Sbjct: 93  PLNLN-AVPPVPILMVGLQGSGKTTTSGKIALRLATRERKRVLLASLDTQRPAAQLQLQQ 151

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A+R     +    G     +A  A    + +  DV+I+DTAGRL  +  LM  + + IR
Sbjct: 152 LAERAGVASLPIVPGQTPVEIARRAMDTGRREGYDVVILDTAGRLSIDEALMDEV-RAIR 210

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
                    P   L V+DA TGQ+A+     F+   G TG++MT+MDG ARGG  + +  
Sbjct: 211 T-----ETTPAETLLVVDAMTGQDAVNTARAFNEAVGVTGVVMTRMDGDARGGAALSMRA 265

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               P+   G GE ++ LE F  +  +  I G  D
Sbjct: 266 MTGAPIKLTGSGEKLDALEEFHPERVAGRILGLGD 300


>gi|27904844|ref|NP_777970.1| signal recognition particle protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|31340420|sp|Q89AE4|SRP54_BUCBP RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|27904242|gb|AAO27075.1| signal recognition particle protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 450

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL++G+ G GKTT   KL + + +    KV++ + D +R AAI QLK+ + +    F
Sbjct: 100 PAIILMIGLQGSGKTTTTAKLGQLIRTKYKKKVIVTSIDIYRLAAIKQLKMLSKQAKISF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S        +   A + A+ K  DVL+IDTAGRL  +  +M        +L   +   
Sbjct: 160 FPSNNTQSPKDIVQHAIQHAKLKFYDVLLIDTAGRLQIDKKMMN------ELLDVYNISH 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P     V DA  GQ+++  +  F+     +  I+TK D   R G ++ I    K P+ F+
Sbjct: 214 PIETFFVADAMFGQDSINVINEFNKYLPVSSFIITKTDSDTRAGIILSIKYLTKKPIKFI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE + +LE F     ++ I G  D
Sbjct: 274 GTGEKLEELELFYPDRIASRILGMGD 299


>gi|289740369|gb|ADD18932.1| signal recognition particle receptor alpha subunit [Glossina
           morsitans morsitans]
          Length = 618

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 33/231 (14%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW------ 161
           ++ P+ I+  GVNGVGK+T + K+   + +    V++AA DTFR+ A++QL+        
Sbjct: 396 NNTPYTIIFCGVNGVGKSTNLAKICFWLIENDFSVLIAACDTFRAGAVEQLRTHTRHLNA 455

Query: 162 ---ADR----TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              ADR    +         G DAA +A EA K A+  +VDV+++DTAGR+ +N  LM  
Sbjct: 456 LHPADRHDGRSMVQLYEKGYGKDAAGIAMEAIKFARDTRVDVVLVDTAGRMQDNEPLMRS 515

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT---------GLIMT 264
           + K+I+V      + P  VL V +A  G  A+ Q+  F+ ++A  +         G+++T
Sbjct: 516 LAKLIKV------NDPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSDGNPHIIDGIVLT 569

Query: 265 KMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           K D    + G  I +      P+ F+G G+   DL+   A + +AV+   +
Sbjct: 570 KFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK---AINVNAVVNSLM 617


>gi|312792668|ref|YP_004025591.1| flagellar biosynthetic protein flhf [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179808|gb|ADQ39978.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 372

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 152/322 (47%), Gaps = 43/322 (13%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGI----------TDIISSRRLDDGVREELEDLLIRSD 57
           S  ++ I++L K   S    LKE I          T  +S +   D +RE L        
Sbjct: 75  SLQMTQIKELEKKIDSLEKALKEVIKKEQEEGINQTKELSKKNFLDVMRENL-------- 126

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVI 114
           I   V  +IV+ LL+   A + S+  V+ ++ + I  ML    PLS  FN  F   P ++
Sbjct: 127 IKNGVENEIVDMLLSNLSA-EASINAVVNNMYKEIKNMLGAAAPLS--FNSKF---PKIV 180

Query: 115 LVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCS 172
             VG  GVGKTT I K++ K M + G KV     DT+R AA++QLK +A+  +    V  
Sbjct: 181 FFVGPTGVGKTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWY 240

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E+  D      E+F  +     DV+++DTAGR H N   M  +   +          P  
Sbjct: 241 EV--DEYDRIIESFADS-----DVVLVDTAGRSHKNQEHMDELKAFVA------KANPDE 287

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V  +L ATT  +  ++V   ++      +I+TK+D  +  G ++ I    + P+ ++  G
Sbjct: 288 VFLLLSATTQPSVFKEVVNTYSFLDDYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTG 347

Query: 293 EGI-NDLEPFVAKDFSAVITGC 313
           + + +D+E F  + F+ +I G 
Sbjct: 348 QNVPDDIEQFNPEQFAKLIIGS 369


>gi|146296300|ref|YP_001180071.1| GTP-binding signal recognition particle [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409876|gb|ABP66880.1| GTP-binding signal recognition particle SRP54, G- domain
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 370

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 153/321 (47%), Gaps = 43/321 (13%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDI--------ISSRRLDDGVREELEDLLIRSDIG 59
           S  LS I++L K   S    +KE I D         +S +   D +RE L+         
Sbjct: 75  SLQLSQIKELEKKIDSLEKTIKEVIKDTNIIPEVKEVSKKNFLDVMRENLK--------K 126

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVG 118
             V ++IVE LL K    D S+  ++ ++ + I  +L  P++   +   S +P V+  VG
Sbjct: 127 NGVEEEIVEGLLAK-VNWDGSINNMVNNMYKEIKNILGTPVTLSLD---SKQPQVVFFVG 182

Query: 119 VNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
             GVGKTT I K++ K M + G KV     DT+R AA++QLK +A          EI + 
Sbjct: 183 PTGVGKTTTIAKIAAKLMFEEGKKVGFITADTYRIAAVEQLKTYA----------EIMNI 232

Query: 178 AAALAYEAFKQAQAKK----VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              + YE  +  Q  K     DV+++DTAGR H N   M  +   +      +  +P  V
Sbjct: 233 KTKVWYEVDEYDQIIKSFDDSDVVLVDTAGRSHKNQEHMDELRAFV------EKASPDEV 286

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             +L ATT  +  +++   ++      +I+TK+D  +  G ++ I    + P+ ++  G+
Sbjct: 287 FLLLSATTQPSVFKEIVNTYSFIDNYKVIITKVDEVSTYGNILNIKHYTQKPIAYVTTGQ 346

Query: 294 GI-NDLEPFVAKDFSAVITGC 313
            + +D++ F  + F+ +I G 
Sbjct: 347 NVPDDIQQFNPEHFAKLIIGS 367


>gi|156086872|ref|XP_001610843.1| signal recognition particle SRP54 protein [Babesia bovis T2Bo]
 gi|154798096|gb|EDO07275.1| signal recognition particle SRP54 protein, putative [Babesia bovis]
          Length = 499

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 131/268 (48%), Gaps = 12/268 (4%)

Query: 53  LIRSDIGVAVAQKIVE--ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS---KPFNWDF 107
           L+ +D+ V + +++ E  +L  + +A  +   +  +    +I + +  LS   KP+    
Sbjct: 39  LLSADVNVKLVRQLRENVKLQVRLHADALGANKRKFIQKAVIEEFINMLSSDRKPYVPKK 98

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            H  ++I+ VG+ G GKTT   K +      G +  L   DTFR+ A DQLK  A +   
Sbjct: 99  GH-ANIIMFVGLQGAGKTTTCTKFAYHYQKKGWRTALICADTFRAGAFDQLKQNAAKVKI 157

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
            F  S   ++A  +A E   + + +K D++I+DT+GR      L   +  +   +K    
Sbjct: 158 PFFGSYSEANAVRVAAEGVAKFKEEKYDIIIVDTSGRHKQEESLFEEMRLIHEAVK---- 213

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  V+ V+D+  GQ    Q   F+ V     +I+TK+DG A+GGG +  V     P+ 
Sbjct: 214 --PDDVIFVMDSHIGQACYDQAAAFNKVVDVGSVIITKLDGHAKGGGALAAVAATNSPII 271

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G GE  ++ E F AK F + + G  D
Sbjct: 272 FIGTGEHFDNFEKFDAKSFVSRMLGMGD 299


>gi|254586281|ref|XP_002498708.1| ZYRO0G16720p [Zygosaccharomyces rouxii]
 gi|238941602|emb|CAR29775.1| ZYRO0G16720p [Zygosaccharomyces rouxii]
          Length = 605

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 35/218 (16%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA------- 162
           +P+V  VVGVNGVGK+T + KL+  +    L+V++ A DTFRS A++QL++         
Sbjct: 380 QPYVFSVVGVNGVGKSTNLSKLAFWLLQNNLRVLVVASDTFRSGAVEQLRVHVENLAELT 439

Query: 163 ------------DRTSAD----FVCSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRL 205
                       D+T  D    F     GSD    +A +A K A+ ++ D++++DTAGR 
Sbjct: 440 DESHIRGSKNRRDKTGNDHVELFEAGYGGSDLVTKIAKQAIKYAKEQEFDIVLMDTAGRR 499

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG----L 261
           HN+  LM+ +       K      P  ++ V +A  G ++++Q + F+   G        
Sbjct: 500 HNDPTLMSPLKSFAEQAK------PDKIIMVGEALVGTDSVQQAKNFNEAFGRVRNLDFF 553

Query: 262 IMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
           I++K D      G ++ +V    IP+ F+GVG+   DL
Sbjct: 554 IISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDL 591


>gi|328352201|emb|CCA38600.1| Signal recognition particle receptor subunit alpha [Pichia pastoris
           CBS 7435]
          Length = 558

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 113/206 (54%), Gaps = 21/206 (10%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD---R 164
           + +P+VI VVGVNGVGK+T + KL+  +     +V++ A DTFRS A++QL++  +   +
Sbjct: 345 ARKPYVISVVGVNGVGKSTNLSKLAFWLLSNKYRVLITACDTFRSGAVEQLRVHVNNLKK 404

Query: 165 TSADFVCSEI------GSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            + D    E+      G+D  + +A  A + A+  K D++++DTAGR HN++ LMA +  
Sbjct: 405 LTEDESHVELFQGGYGGADLVSKIAKGAIQYAEENKFDIVLLDTAGRRHNDAQLMAPLQG 464

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARG- 272
            ++  K      P  ++ V +A  G ++++Q + F+   G        I++K D      
Sbjct: 465 FVKAAK------PDKIIMVGEALVGTDSVQQAKNFNGAFGPGRTLDFFIISKCDTVGDLI 518

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDL 298
           G ++ +V    IP+ F+G G+   DL
Sbjct: 519 GSMVNMVYATGIPILFVGTGQTYTDL 544


>gi|254568342|ref|XP_002491281.1| Signal recognition particle (SRP) receptor-alpha subunit [Pichia
           pastoris GS115]
 gi|238031078|emb|CAY69001.1| Signal recognition particle (SRP) receptor-alpha subunit [Pichia
           pastoris GS115]
          Length = 558

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 113/206 (54%), Gaps = 21/206 (10%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD---R 164
           + +P+VI VVGVNGVGK+T + KL+  +     +V++ A DTFRS A++QL++  +   +
Sbjct: 345 ARKPYVISVVGVNGVGKSTNLSKLAFWLLSNKYRVLITACDTFRSGAVEQLRVHVNNLKK 404

Query: 165 TSADFVCSEI------GSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            + D    E+      G+D  + +A  A + A+  K D++++DTAGR HN++ LMA +  
Sbjct: 405 LTEDESHVELFQGGYGGADLVSKIAKGAIQYAEENKFDIVLLDTAGRRHNDAQLMAPLQG 464

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARG- 272
            ++  K      P  ++ V +A  G ++++Q + F+   G        I++K D      
Sbjct: 465 FVKAAK------PDKIIMVGEALVGTDSVQQAKNFNGAFGPGRTLDFFIISKCDTVGDLI 518

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDL 298
           G ++ +V    IP+ F+G G+   DL
Sbjct: 519 GSMVNMVYATGIPILFVGTGQTYTDL 544


>gi|320582191|gb|EFW96409.1| Signal recognition particle (SRP) receptor-alpha subunit [Pichia
           angusta DL-1]
          Length = 550

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 39/284 (13%)

Query: 45  VREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           V+  L   LI+ ++   VA  ++    +EL+    A   SVQ       + + K L+ L 
Sbjct: 262 VKSALSTHLIKKNVAPDVANSLISEIEKELVGSTTANFTSVQDT---AKKSLEKQLIKLL 318

Query: 101 KPFNW-DF----------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            P N  D           ++ P+VI VVGVNGVGK+T + KL+  +     +V++ A DT
Sbjct: 319 TPNNSIDLLKEIQAKKASNNLPYVISVVGVNGVGKSTNLSKLAYWLLQNNYRVLITACDT 378

Query: 150 FRSAAIDQLKIWAD---RTSADFVCSEI------GSD-AAALAYEAFKQAQAKKVDVLII 199
           FRS A++QL+   +   + S D    E+      G+D  A +A  A K A+    D++++
Sbjct: 379 FRSGAVEQLRTHVNNLTKLSPDQKQIELFEGGYGGADLVAKIATGAIKYAKQNNFDIVLL 438

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGR HN++ LMA +    +         P  ++ V +A  G +++ Q + F+   G+ 
Sbjct: 439 DTAGRRHNDTQLMAPLASFAKAAN------PDKIIMVGEALVGTDSVLQAQNFNKAFGSN 492

Query: 260 G----LIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
                 I++K D      G ++ +V    IP+ F+G G+   DL
Sbjct: 493 RHLDFFIVSKCDTVGDLIGSMVNLVYATGIPILFVGNGQTYTDL 536


>gi|301299298|ref|ZP_07205584.1| signal peptide binding domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853142|gb|EFK80740.1| signal peptide binding domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 345

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           + A D +R AAIDQLKI             +  D   +  +  ++A+ KK D +IIDTAG
Sbjct: 1   MIAADVYRPAAIDQLKILGKDIDVPVFSLGVDVDPVEIVRQGLEEAKDKKNDYVIIDTAG 60

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RL  +  LM  +  +  + +      P  +L  +DA TGQNA+   + F+     TG+++
Sbjct: 61  RLQIDEKLMQELSSIKELAQ------PDEILLTVDAMTGQNAVEVAKGFNDQLDVTGVVL 114

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ I G  D
Sbjct: 115 TKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMTDLDVFYPDRMASRILGMGD 166


>gi|213416645|ref|ZP_03349789.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 94

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 59/85 (69%)

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +K+LD  APH V+  +DA+TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +   
Sbjct: 1   MKKLDEEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQ 60

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDF 306
             IP+ ++GVGE I DL PF A DF
Sbjct: 61  FGIPIRYIGVGERIEDLRPFKADDF 85


>gi|49471607|gb|AAT66125.1| signal recognition particle [Mycoplasma arthritidis]
          Length = 265

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 100/188 (53%), Gaps = 17/188 (9%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-----KKMSDAGLKVMLAAGDTFRSAA 154
           + P        P  I++VG+ G GKTT   KL+     KK+    L   L   D +R AA
Sbjct: 88  TNPIEISLKKIPTTIMMVGLQGSGKTTTAAKLATFFKKKKLCQNPL---LVGDDIYRPAA 144

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +QL+  A +T  DF   E  +DA  +A EA K+A   + D++I+DTAGRL  +  LM  
Sbjct: 145 REQLEQLAKQTQTDFFTKE-KNDAIFIAKEAIKRANDNRNDLVIVDTAGRLAIDENLM-- 201

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
             ++I + K +  H P  +L V+DA +GQ+ +   ++FH     +  I+TK+D  ARGG 
Sbjct: 202 -DELINIKKAI--H-PDYILLVVDAMSGQDVINVAKIFHENLNLSATIITKLDSDARGGA 257

Query: 275 LIPIVVTH 282
            + I  TH
Sbjct: 258 ALSI--TH 263


>gi|332652596|ref|ZP_08418341.1| signal recognition particle protein [Ruminococcaceae bacterium D16]
 gi|332517742|gb|EGJ47345.1| signal recognition particle protein [Ruminococcaceae bacterium D16]
          Length = 459

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 152/305 (49%), Gaps = 28/305 (9%)

Query: 30  EGITDIISSR--------RLDDG-VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77
           EG+T+ +S+         RL +  V+E + ++   L+ +D+   V ++ + ++  K    
Sbjct: 4   EGLTEKLSAAFKKLRGKGRLSEADVKEAMREIRLALLEADVSYKVVKQFIAQVTEKAVGA 63

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           DV       Q ++  V++ +  ++   S       S  P ++++VG+ G GKTT   KL+
Sbjct: 64  DVLEALSPAQMIIKIVNQELTDLMGGTSAKLEI-ASKPPTIVMMVGLQGAGKTTNCAKLA 122

Query: 133 KKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQ 190
             M    G + +LAA D +R AAI QL++   +   D    ++G ++   +A  A   A+
Sbjct: 123 GLMKKQNGKRPLLAACDIYRPAAIKQLEVVGQQL--DLPVFQMGQANPVDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++ +DTAGRLH +  LM      +R +K      P  +L V+DA  GQ+A+   +
Sbjct: 181 EHGNDMVFLDTAGRLHVDEELM----DELRAIKA--AVEPTEILLVVDAMIGQDAVNAAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F       G+++TK+DG ARGG  + I      P+ F+GVGE ++ +E F     ++ I
Sbjct: 235 AFDDALDIDGVVLTKLDGDARGGAALSIKAVTGKPIKFVGVGEKLDQIEVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|302692290|ref|XP_003035824.1| hypothetical protein SCHCODRAFT_74228 [Schizophyllum commune H4-8]
 gi|300109520|gb|EFJ00922.1| hypothetical protein SCHCODRAFT_74228 [Schizophyllum commune H4-8]
          Length = 645

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 31/227 (13%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW--------- 161
           P+ I  VGVNGVGK+T + K+   +   GL+V++AA DTFRS A++QL++          
Sbjct: 424 PYTIAFVGVNGVGKSTNLSKVCFWLIQNGLRVLIAACDTFRSGAVEQLRVHVRNLGMLGV 483

Query: 162 ---AD-RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
              AD +   +      G DAAA+  EA + A+    DV++IDTAGR+ +N  LM  + K
Sbjct: 484 NGAADSKGRVELFERGYGKDAAAIGKEAIQYAKDNDFDVVLIDTAGRMQDNEPLMRALAK 543

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTKM 266
           ++ V      + P  ++ V +A  G  A+ Q+  F               G  G+++TK 
Sbjct: 544 LVAV------NNPDKIVFVGEALVGNEAVDQLTKFDRALRDFSSMSGVGRGIDGMLVTKW 597

Query: 267 DGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           D    + G  + +      P+ F+G G+   DL     ++    I G
Sbjct: 598 DTVDDKVGAALSMTYITGQPILFVGCGQTYTDLRQLRVQNVVQAILG 644


>gi|56758718|gb|AAW27499.1| SJCHGC06360 protein [Schistosoma japonicum]
          Length = 659

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 154/320 (48%), Gaps = 45/320 (14%)

Query: 17  LTKGFAST---SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           L  GFAS+    L++  G   +++   +   + E+L + L+  ++ +++A+++   +  +
Sbjct: 333 LNGGFASSLLRGLRIAGGTGRVLTQEDITPCL-EQLRERLVSKNVAMSIAERVCSSVSDR 391

Query: 74  RYAKDVSV-----QRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGV 122
                +        RV   + ++  ++L+       L    +     RP+ I+  GVNGV
Sbjct: 392 LVGTSLGTFERIYPRVKASLEDVCSRILVSGRRVDVLRDALDARTPGRPYSIVFCGVNGV 451

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----ADFVCSEI---- 174
           GK+T + K++  + +   +V++AA DTFRS A++QL+    + +    AD    +I    
Sbjct: 452 GKSTNLAKIAFWLIEKNFRVLIAACDTFRSGAVEQLRTHVRKLNYIHPADQHGGQIMVEL 511

Query: 175 -----GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                G DAA++A  A   A+ +  DV+++DTAGR+ +N  LM  +  +I+       + 
Sbjct: 512 YEQGYGRDAASIARSAINYARDRHFDVVLVDTAGRMQDNEPLMRALALLIQT------NQ 565

Query: 230 PHSVLQVLDATTGQNALRQVEMF------HAVAG----TTGLIMTKMDG-TARGGGLIPI 278
           P  VL V +A  G  A+ Q+  F      H+ +       G+++TK D    + G  I +
Sbjct: 566 PDLVLFVGEALVGNEAVDQLVKFNQSLADHSYSDHPRCIDGIVLTKFDTIDDKVGAAISM 625

Query: 279 VVTHKIPVYFLGVGEGINDL 298
                 P+ F+G G+  +DL
Sbjct: 626 ACISNQPIVFVGTGQTYSDL 645


>gi|50556754|ref|XP_505785.1| YALI0F23375p [Yarrowia lipolytica]
 gi|4838528|gb|AAD31027.1|AF132597_1 signal sequence receptor alpha subunit [Yarrowia lipolytica]
 gi|49651655|emb|CAG78596.1| YALI0F23375p [Yarrowia lipolytica]
          Length = 557

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 132/285 (46%), Gaps = 57/285 (20%)

Query: 62  VAQKIVEELLTKRYAKDVSV----------------------QRVLYDVSELIHKMLMPL 99
           V  K+ E+L+ K  AK+V+V                      Q V   +++ + K+L P 
Sbjct: 268 VTAKVEEQLMKKNVAKEVAVHLCDQVSRSLVGCTTNSWTTVEQTVQQAMADALRKILTPS 327

Query: 100 SKPFNWDFSH-----------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +   + D  H           RP+VI VVGVNGVGK+T + K+   +    +++++AA D
Sbjct: 328 A---SLDLLHEVQRHKKLGGGRPYVISVVGVNGVGKSTNLSKIGFWLLQNKMRLLVAACD 384

Query: 149 TFRSAAIDQLKIWADRTS----------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           TFRS A++QL +  +R S           +      G D A  A +A +  +    DV++
Sbjct: 385 TFRSGAVEQLGVHVNRLSELAGRQGTGEVELFAQGYGKDPAHTAEKAVEYGEKHGFDVVL 444

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDTAGR H++  LM  + K  +  +      P+ ++ V +A  G ++++Q   F+   G 
Sbjct: 445 IDTAGRRHSDKRLMGDLEKFAKRAR------PNKIIMVGEALVGTDSVQQARNFNDAFGK 498

Query: 259 TG----LIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
                  +++K D      G ++ +     IPV F+G G+   DL
Sbjct: 499 DRNLDFFLISKCDTVGDMIGSIVNMTYATNIPVLFVGTGQHYTDL 543


>gi|330813439|ref|YP_004357678.1| signal recognition particle, subunit Ffh SRP54 [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486534|gb|AEA80939.1| signal recognition particle, subunit Ffh SRP54 [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 381

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 9/207 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  ILVVG+ G GKTT   KL+K +      K ML + D +R AA  QL++  +  S   
Sbjct: 28  PIKILVVGLQGSGKTTTSAKLAKYLEKQYSKKSMLVSLDIYRPAAQRQLEVLGNSNSIKT 87

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH- 228
           +    G     ++  A   A     DV+I DTAGR   +        +M+  LK+L+   
Sbjct: 88  LPIMDGQFPLEISKRAINAASLSGEDVIIFDTAGRTQIDQ-------QMMMELKQLENDI 140

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  ++ V D+ TGQ+A+     F      + +I+T++DG  +GG  + +  T   P+ F
Sbjct: 141 QPSEIILVADSLTGQDAVNIASEFKKTVSLSSIILTRIDGDGKGGAALSMKSTTGCPIKF 200

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           LG GEGI+++E F     +  I G  D
Sbjct: 201 LGTGEGIDEMEVFHPDRIANRILGMGD 227


>gi|207108639|ref|ZP_03242801.1| signal recognition particle receptor [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 186

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 97/174 (55%), Gaps = 20/174 (11%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVL-----YDVSE 90
            ++ ++  +EELE++LI  DI   + + +++ L  L      +V++ R +     YD + 
Sbjct: 19  EKKRENIPKEELEEILIGFDIQYDLIESLLQHLGDLVTPKQLEVALLRFVRGESYYDKTR 78

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           L                + +P V L+VGVNG GKTT I KL+K       K +L AGDTF
Sbjct: 79  L-------------KTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTF 125

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           R+AA+ QL++W ++ +   + ++ GSD ++LAY   + A AK +D + IDTAGR
Sbjct: 126 RAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGR 179


>gi|85714453|ref|ZP_01045441.1| Signal recognition particle protein [Nitrobacter sp. Nb-311A]
 gi|85698900|gb|EAQ36769.1| Signal recognition particle protein [Nitrobacter sp. Nb-311A]
          Length = 511

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  I++VG+ G GKTT   KL++++++    KV++A+ D +R AA++QL +         
Sbjct: 100 PITIMMVGLQGSGKTTTTAKLARRLTERDKRKVLMASLDIYRPAAMEQLAVLGRDLDIKT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +   +G     +A  A +  +    DV+++DTAGR   +  +M+    +     +   H 
Sbjct: 160 LPIVVGQKPEQIARRALEAGKLGGYDVVLLDTAGRTTLDEEMMSEAANI-----KTAAH- 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V D+ TGQ+A+     F    G TG+++T++DG  RGG  + +      P+  +
Sbjct: 214 PHEVLLVADSLTGQDAVNLARSFDERVGLTGIVLTRVDGDGRGGAALSMRQVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE  + LE F     +  I G  D
Sbjct: 274 GTGEKTDALEDFHPSRIAGRILGMGD 299


>gi|309806528|ref|ZP_07700531.1| Signal peptide binding domain protein [Lactobacillus iners LactinV
           03V1-b]
 gi|308167071|gb|EFO69247.1| Signal peptide binding domain protein [Lactobacillus iners LactinV
           03V1-b]
          Length = 342

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 88/173 (50%), Gaps = 7/173 (4%)

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ML AGD +R AAIDQLK      +   V SE  +D  A+      QA     D +IIDTA
Sbjct: 1   MLIAGDIYRPAAIDQLKTIGASLNVP-VYSENNTDVVAIVENGLMQADRNHNDYVIIDTA 59

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL  +  LM  +  ++ V        P +++ V DA TGQ A    E F++    TGLI
Sbjct: 60  GRLEIDDQLMDELKNIVDVAH------PENIILVADAMTGQVAATVAEGFNSKLKLTGLI 113

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +TK+DG  RGG  + I     +P+ F G GE + +L+ F     ++ I G  D
Sbjct: 114 LTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDRMASRILGMGD 166


>gi|312135833|ref|YP_004003171.1| flagellar biosynthetic protein flhf [Caldicellulosiruptor
           owensensis OL]
 gi|311775884|gb|ADQ05371.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           owensensis OL]
          Length = 371

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 150/313 (47%), Gaps = 26/313 (8%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           S  ++ I++L K   S    LKE I  +   S++  +  R+   D++  + I   V  +I
Sbjct: 75  SLQMTQIKELEKKIDSLEKALKEVIKKEQEESQQTKEASRKNFLDVMRENLIKNGVENEI 134

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           V+ LL+   + D S+  ++  +   I  ML   + P ++D S  P ++  VG  GVGKTT
Sbjct: 135 VDILLS-NVSGDGSINTIVNSMYREIKNMLGS-AAPLSFD-SKFPRIVFFVGPTGVGKTT 191

Query: 127 VIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWAD----RTSADFVCSEIGSDAAAL 181
            I K++ K M + G KV     DT+R AA++QLK +A+    +T   +   E      +L
Sbjct: 192 TIAKIAAKLMFENGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEVDEYDGIIESL 251

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A            DV+++DTAGR H N   M  +   +          P  +  +L ATT
Sbjct: 252 A----------DSDVVLVDTAGRSHKNQEHMDELKAYVA------KANPDEIFLLLSATT 295

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEP 300
             +  ++V   ++      +I+TK+D  +  G ++ I    + P+ ++  G+ + +D+E 
Sbjct: 296 QPSVFKEVVNTYSFLDNYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTGQNVPDDIEQ 355

Query: 301 FVAKDFSAVITGC 313
           F  + ++ +I G 
Sbjct: 356 FNPEQYAKLIIGS 368


>gi|316972676|gb|EFV56341.1| signal recognition particle receptor subunit alpha [Trichinella
           spiralis]
          Length = 665

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 140/286 (48%), Gaps = 36/286 (12%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYDVSE--LIHKMLM 97
           G  E++++ LI  ++   VA K+ + + T      V     +  V+ D     L+  +L 
Sbjct: 373 GPLEKMKEQLIGKNVAAEVADKLCQSVRTSLRGSVVGQFSLIAGVVRDAFRQCLVQLLLK 432

Query: 98  P------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           P      L   F    S R + I+  GVNGVGK+T + K++  +++ G +V++AA DTFR
Sbjct: 433 PERNSCLLRDIFQARESARCYSIVFCGVNGVGKSTNLAKVAFWLNENGFRVLIAACDTFR 492

Query: 152 SAAIDQLKI---WADRTSADFVC---SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           + A++QL+    + D      V       G DAAA+A  A   A+A  +DV+++DTAGR+
Sbjct: 493 AGAVEQLRTHVRYLDELHPGLVQLYEQGYGKDAAAVAASAISYAEANNLDVVLVDTAGRM 552

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV---------- 255
            +N  LM  +GK+IRV      + P  VL V +A  G  A+ Q++ F             
Sbjct: 553 QDNEPLMRALGKLIRV------NEPDLVLFVGEALVGNEAVDQLQKFSRALIDCAAVDQQ 606

Query: 256 -AGTTGLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
                G+++TK D    + G  + +      P+ F+G G+   DL+
Sbjct: 607 DTPIDGIMLTKFDTIDDKVGAAVSMTYITGKPILFVGTGQTYKDLK 652


>gi|92119038|ref|YP_578767.1| signal recognition particle protein [Nitrobacter hamburgensis X14]
 gi|91801932|gb|ABE64307.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nitrobacter
           hamburgensis X14]
          Length = 511

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  I++VG+ G GKTT   KL++++++    KV++A+ D +R AA++QL +         
Sbjct: 100 PITIMMVGLQGSGKTTTTAKLARRLTERDKRKVLMASLDIYRPAAMEQLAVLGRDLDIQT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A +  +    DV+++DTAGR   ++ +M+     I+   R     
Sbjct: 160 LPILAGQKPEQIARRALEAGKLGGYDVVLLDTAGRTTLDNEMMSEAAN-IKAAAR----- 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V D+ TGQ+A+     F    G TG+++T++DG  RGG  + +      P+  +
Sbjct: 214 PHEVLLVADSLTGQDAVNLARSFDERVGLTGIVLTRVDGDGRGGAALSMRQVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE  + LE F     +  I G  D
Sbjct: 274 GTGEKTDALEDFHPSRIAGRILGMGD 299


>gi|222834682|gb|EEE73145.1| predicted protein [Populus trichocarpa]
          Length = 250

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 130/258 (50%), Gaps = 32/258 (12%)

Query: 28  LKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKI--------VEELLTKRY 75
           L+  I  I+SS+ +D+ +  EL    +  LIRSD+ V + ++I        V E+     
Sbjct: 9   LRSAIKKIVSSQGVDEKLIHELALDVQRALIRSDVDVRLVKEIAGRLEERCVGEVPPPGL 68

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLS 132
           ++   + ++LYD    + K+L   S     +FS +P   + +L++G+ G GK+T+  KL+
Sbjct: 69  SRKDHIVKILYDE---LAKLLGGES-----EFSFKPGRTNKVLMLGIQGSGKSTITAKLA 120

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K ++  G K  +   DT+R  A+ QL+   +R++ +    E  SDA A+     +     
Sbjct: 121 KLLTRQGYKTGVVGADTYRPGALVQLRTMCERSNVEVYGEEGESDAPAVVRRGLRHF-GD 179

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEM 251
             DV+++DTAGR H         G+++  +KR+   A P   L V+D T G     Q E 
Sbjct: 180 SCDVILVDTAGR-HKEE------GELLDEMKRIGKAAEPDLALLVIDGTIGNRCYAQAEA 232

Query: 252 FHAVAGTTGLIMTKMDGT 269
           FH      G+++TK+D +
Sbjct: 233 FHKTVPVGGIVVTKLDSS 250


>gi|154346124|ref|XP_001568999.1| signal recognition particle receptor like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134066341|emb|CAM44132.1| putative signal recognition particle receptor like protein
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 601

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 134/282 (47%), Gaps = 34/282 (12%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMPLSKP 102
           +L + LI  ++ V VA+++ + +      K +     LY   E      + ++L P  + 
Sbjct: 320 DLREKLIAKNVAVEVAEQVCKSVEVSLAGKRLGTFDSLYKTVEDAMTASLRRILQP-KRE 378

Query: 103 FNW-------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
            N          +H+P+ I++ GVNGVGK+T + K++  +      V+LAAGDTFR  A+
Sbjct: 379 VNLLRDVAVAKAAHKPYSIILCGVNGVGKSTSLAKIAYWLQQNDNSVLLAAGDTFRHGAV 438

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL++              G+D +A+A  A   A  +  DV+IIDTAGR+ ++   M  +
Sbjct: 439 EQLEVHGRCLGVPVFQLGYGTDPSAVAAAAIVHASKQHTDVVIIDTAGRMQDHESRMRAL 498

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMT 264
            K+I        + P  VL V +A  G N + Q+  F+              G  G+++T
Sbjct: 499 AKLIH------DNQPDLVLFVGEALVGNNGIDQLRKFNQCLVDFAPVGSRSRGIDGIVLT 552

Query: 265 KMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL---EPFV 302
           K D    + G  + +V     P+ F+GVG+   DL   EP V
Sbjct: 553 KFDTIDDKVGAALSMVYELGQPIVFVGVGQTYQDLKVIEPEV 594


>gi|299133089|ref|ZP_07026284.1| signal recognition particle protein [Afipia sp. 1NLS2]
 gi|298593226|gb|EFI53426.1| signal recognition particle protein [Afipia sp. 1NLS2]
          Length = 510

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 9/207 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  I++VG+ G GKTT   KL+++++    K V++A+ D +R AA +QL +     S + 
Sbjct: 100 PIAIMMVGLQGSGKTTTTAKLARRLTQRDKKKVLMASLDVYRPAAQEQLAVLGRDLSIET 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    D++++DTAGR   +        +M+R    +   A
Sbjct: 160 LPVVAGQMPPQIAQRALQAAKLGGYDIVLLDTAGRTTLDE-------EMMREAATVKTAA 212

Query: 230 -PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            PH VL V D+ TGQ+A+     F    G TG+++T++DG  RGG  + +      P+  
Sbjct: 213 NPHEVLLVADSLTGQDAVNLARAFDERVGLTGIVLTRVDGDGRGGAALSMRAVTGKPIKL 272

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE  + LE F     +  I G  D
Sbjct: 273 IGTGEKTDALEDFHPSRIAGRILGMGD 299


>gi|148251976|ref|YP_001236561.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Bradyrhizobium sp. BTAi1]
 gi|146404149|gb|ABQ32655.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Bradyrhizobium sp. BTAi1]
          Length = 515

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  I++VG+ G GKTT   KL+++M      KV++A+ D +R AA++QL +         
Sbjct: 100 PVPIMMVGLQGSGKTTTTAKLARRMVQRDKRKVLMASLDVYRPAAMEQLAVLGRDLDIPT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+++DTAGR   +  +M    ++  V        
Sbjct: 160 LPIVAGQMPPQIARRAIEAAKLGGYDVVLLDTAGRTTLDEDMMKEAAEIKAVAN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V D+ TGQ+A+     F    G TG+ +T++DG  RGG  + +      P+  L
Sbjct: 214 PHEVLLVADSLTGQDAVNLARAFDQRVGLTGIALTRIDGDGRGGAALSMRAVTGKPIKLL 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE  + LE F     +  I G  D
Sbjct: 274 GTGEKTDALEDFYPSRIAGRILGMGD 299


>gi|290994923|ref|XP_002680081.1| predicted protein [Naegleria gruberi]
 gi|284093700|gb|EFC47337.1| predicted protein [Naegleria gruberi]
          Length = 470

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 9/203 (4%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           VI+V G+ G GKTT   KL+ ++      +V+L + DT+R AA  QL+  A +   + + 
Sbjct: 96  VIMVTGIQGSGKTTSSAKLALQLKRKENRRVLLVSLDTYRPAAQMQLQTLAQQIQVESLP 155

Query: 172 SEIGSDAAALAYEAFKQ--AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                +   +A  A +      ++ D +I DTAGR+H +  LM  + ++  +++      
Sbjct: 156 IIPEQNPIEIAKRAMEYVGPNGEQFDTVIFDTAGRMHIDEQLMTELEELRAIVQ------ 209

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+  L V D+  G +A+     FH   G +G+++T+MDGT+ GG  I +     + V ++
Sbjct: 210 PNETLLVADSMLGNDAVNIATQFHDRVGLSGIVLTRMDGTSSGGCAISMKQVVGLSVKYI 269

Query: 290 GVGEGINDLEPFVAKDFSAVITG 312
           G+GE ++DLE F  +  +  I G
Sbjct: 270 GIGERMDDLETFDPQSLAKRILG 292


>gi|146337525|ref|YP_001202573.1| signal recognition particle protein [Bradyrhizobium sp. ORS278]
 gi|146190331|emb|CAL74327.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA, ffh family (fifty
           four homolog) [Bradyrhizobium sp. ORS278]
          Length = 515

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  I++VG+ G GKTT   KL+++M      KV++A+ D +R AA++QL +         
Sbjct: 100 PVPIMMVGLQGSGKTTTTAKLARRMVQRDKRKVLMASLDVYRPAAMEQLAVLGRDLDIPT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A + A+    DV+++DTAGR   +  +M    ++  V        
Sbjct: 160 LPIVAGQMPPQIARRAIEAAKLGGYDVVLLDTAGRTTLDEDMMKEAAEIKAVAN------ 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V D+ TGQ+A+     F    G TG+ +T++DG  RGG  + +      P+  L
Sbjct: 214 PHEVLLVADSLTGQDAVNLARSFDQRVGLTGIALTRIDGDGRGGAALSMRAVTGKPIKLL 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE  + LE F     +  I G  D
Sbjct: 274 GTGEKTDALEDFYPSRIAGRILGMGD 299


>gi|242010419|ref|XP_002425965.1| signal recognition particle receptor alpha subunit, putative
           [Pediculus humanus corporis]
 gi|212509956|gb|EEB13227.1| signal recognition particle receptor alpha subunit, putative
           [Pediculus humanus corporis]
          Length = 615

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 132/285 (46%), Gaps = 35/285 (12%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP- 102
           V ++L+D LI  ++   +A K+ + +  K   K + +  R+   V   +++ L+ +  P 
Sbjct: 333 VLDKLKDHLIAKNVAADIAGKLCDSVAVKLQGKILGTFDRIATTVEATLNESLVQILSPR 392

Query: 103 ---------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                    F      RP+V++  GVNGVGK+T + K+   + +   +V++AA DTFR+ 
Sbjct: 393 RRVDILRDAFEAKKQSRPYVMVFCGVNGVGKSTNLAKICFWLIENKFRVLIAACDTFRAG 452

Query: 154 AIDQLKIWADRTSA-------------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           A++QL+      +A                    G DAA +A EA   A+   +D++++D
Sbjct: 453 AVEQLRTHTRHLNALHPPEKNNNLQMVQLYEKGYGKDAAGIAMEAIGYARDSNIDIVLVD 512

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGR+ +N  LM  + K+I+V      ++P  V  V        AL             G
Sbjct: 513 TAGRMQDNEPLMKALAKLIKV------NSPDLVXXV----KFNQALADFSQSINPHLIDG 562

Query: 261 LIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           +++TK D    + G  I +      P+ F+G G+   DL+   AK
Sbjct: 563 IVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYTDLKSLNAK 607


>gi|269302996|gb|ACZ33096.1| signal recognition particle protein [Chlamydophila pneumoniae
           LPCoLN]
          Length = 448

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 104/211 (49%), Gaps = 17/211 (8%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           P +IL+ G+ G GKTT   KL+  +  +    KV++   D  R AA+DQLKI   +T A+
Sbjct: 99  PSIILLCGLQGAGKTTTAAKLADYVIKNKKAKKVLVVPCDLKRFAAVDQLKILVAQTKAE 158

Query: 169 FVCSE----IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
           F  S+    I     ALAY     A+    D +I+DTAGRL+ ++ LM  +  + +V   
Sbjct: 159 FYQSQENKPIDVVVKALAY-----AKENGHDFVILDTAGRLNIDNELMEELTAIQKV--- 210

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                 +  L V++   GQ+ L  V+ F      TG+I++  DG AR G +  I      
Sbjct: 211 ---SQANERLFVMNVAMGQDVLATVQAFDQSLDLTGVILSMTDGDARAGAVFSIKHVLGK 267

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F G GE I DL  F  +  +  I G  D
Sbjct: 268 PIKFEGCGERIQDLRSFDPQSMAERILGMGD 298


>gi|218679901|ref|ZP_03527798.1| signal recognition particle protein [Rhizobium etli CIAT 894]
          Length = 388

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 94/175 (53%), Gaps = 6/175 (3%)

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           KV++A+ DT R AA +QL+    + S D +    G     +A  A + A+    DV+I+D
Sbjct: 14  KVLMASLDTRRPAAQEQLRQLGAQASIDTLPVISGQSPTDIAARAVQAARLGGHDVVILD 73

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGR H +  LM    +M  + K+ +PH    +L V D+ TGQ+A+     F    G TG
Sbjct: 74  TAGRTHIDEPLMV---EMADIKKKSNPH---EILLVADSLTGQDAVNLARNFDERVGITG 127

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           L++T+MDG  RGG  + +      P+  +GVGE +++LE F  +  +  I G  D
Sbjct: 128 LVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILGMGD 182


>gi|209883424|ref|YP_002287281.1| signal recognition particle protein [Oligotropha carboxidovorans
           OM5]
 gi|209871620|gb|ACI91416.1| signal recognition particle protein [Oligotropha carboxidovorans
           OM5]
          Length = 515

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 9/207 (4%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  I++VG+ G GKTT   KL+++++    K +++A+ D +R AA +QL +     S + 
Sbjct: 100 PIAIMMVGLQGSGKTTTTAKLARRLTQRDKKKILMASLDVYRPAAQEQLAVLGRDLSVET 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A +  +    DV+++DTAGR   +        +M+R    +   A
Sbjct: 160 LPVVAGQMPQQIAQRALQAGKLGGYDVVLLDTAGRTTLDE-------EMMREAAAVKTAA 212

Query: 230 -PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            PH VL V DA TGQ+A+     F    G TG+++T++DG  RGG  + +      P+  
Sbjct: 213 NPHEVLLVADALTGQDAVNLARAFDERVGLTGIVLTRVDGDGRGGAALSMRAVTGKPIKL 272

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE  + LE F     ++ I G  D
Sbjct: 273 IGTGEKTDALEDFHPSRIASRILGMGD 299


>gi|224476349|ref|YP_002633955.1| hypothetical protein Sca_0860 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420956|emb|CAL27770.1| truncated signal recognition particle homolog (fragment 1)
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 271

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+ +D+   V +  ++ +  +    DV       Q+V+  V + + +++   +   N   
Sbjct: 39  LLEADVNFKVVKSFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTQLMGGENSTINM-A 97

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V+++VG+ G GKTT  GKL+  M      K +L A D +R AAIDQL+    + +
Sbjct: 98  NKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAADIYRPAAIDQLETVGKQLN 157

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +   A K A+ + +D +IIDTAGRLH +  LM+ + ++  + K   
Sbjct: 158 LPVYSEGDQVKPQQIVENALKYAKEEHLDFVIIDTAGRLHIDEALMSELTEVKEISK--- 214

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
              P  ++ V+DA TGQ+A+   + F      TG+ +TK+DG  RGG  + I
Sbjct: 215 ---PDEIMLVVDAMTGQDAVNVAQSFDDQLDVTGVTLTKLDGDTRGGAALSI 263


>gi|321253682|ref|XP_003192816.1| signal recognition particle binding protein [Cryptococcus gattii
           WM276]
 gi|317459285|gb|ADV21029.1| signal recognition particle binding protein, putative [Cryptococcus
           gattii WM276]
          Length = 671

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 120/264 (45%), Gaps = 36/264 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           Q ++   LT+      S   +L ++       L  L    + D    P+ +  VGVNGVG
Sbjct: 401 QSVLSTSLTRVLTPKTSTD-ILLEIQRKRSSHLATLGTTSSPDSGPDPYTLTFVGVNGVG 459

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------------DFV 170
           K+T + K+   +   GLKV++AA DTFRS A++QL++      A             +  
Sbjct: 460 KSTNLSKVCFWLLQNGLKVLIAACDTFRSGAVEQLRVHVRNLGALGEEMGQGKGKRIELF 519

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G DAA +A +A   A+    DV++IDTAGR+ +N  LM  + K++ V      + P
Sbjct: 520 ERGYGKDAAGIAKDAIAYAKEHAFDVVLIDTAGRMQDNEPLMRALAKLVTV------NNP 573

Query: 231 HSVLQVLDATTGQNALRQVEMFH------------AVA---GTTGLIMTKMDGT-ARGGG 274
             ++ V +A  G  A+ Q+  F              VA   G  G+I+TK D    + G 
Sbjct: 574 DKIVFVGEALVGNEAVDQLTKFDRALRDFSGAGVGGVARKRGIDGIILTKFDTIDDKVGA 633

Query: 275 LIPIVVTHKIPVYFLGVGEGINDL 298
            + +      P+ F+G G+   DL
Sbjct: 634 ALSMTYITGQPILFVGCGQTYTDL 657


>gi|315651824|ref|ZP_07904828.1| signal recognition particle protein [Eubacterium saburreum DSM
           3986]
 gi|315485954|gb|EFU76332.1| signal recognition particle protein [Eubacterium saburreum DSM
           3986]
          Length = 451

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 156/306 (50%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+    ++    RL +D VR  L+++   L+ +D+   V +  ++ +  K   
Sbjct: 3   FESLSEKLQNVFKNLRGKGRLSEDDVRIGLKEVRLALLEADVSFKVVKDFIKGIQEKATG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V+E +  ++   +       S    VI++ G+ G GKTT   KL
Sbjct: 63  SNVLNSLTPAQQVIKIVNEEMVSLMGSETTELKIKPSGDITVIMMAGLQGAGKTTTTAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD--AAALAYEAFKQA 189
           + K+   G   +L   D +R AAI+QLK   ++   D    ++G++     +A +A + A
Sbjct: 123 AAKLKKKGNSPVLVGCDIYRPAAIEQLKRNGEKV--DVPVFDMGTNHKPVEIAKKALEYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    +++ +DTAGRLH +  +M    ++I +   ++      ++ V+DA TGQ+A+   
Sbjct: 181 KENHHNIVFLDTAGRLHIDEDMM---NELIEIKDNVNVD---DIILVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+I+TK+DG  RGG  + +      P+ ++G+GE ++DLE F     ++ 
Sbjct: 235 ETFNEKLDITGVILTKLDGDTRGGAALSVRAVTGKPILYVGMGEKLSDLEQFYPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|75676963|ref|YP_319384.1| Signal recognition particle protein [Nitrobacter winogradskyi
           Nb-255]
 gi|74421833|gb|ABA06032.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nitrobacter
           winogradskyi Nb-255]
          Length = 516

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I++VG+ G GKTT   KL++++++    KV++A+ D +R AA++QL +         
Sbjct: 100 PVIIMMVGLQGSGKTTTTAKLARRLTERDKRKVLMASLDIYRPAAMEQLAVLGRDLDIKT 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G     +A  A +  +    DV+++DTAGR   +  +M+    +     +   H 
Sbjct: 160 LPIVAGQKPEQIARRALEAGKLGGYDVVLLDTAGRTTLDEDMMSEAASI-----KTAAH- 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V D+ TGQ+A+     F    G TG+++T++DG  RGG  + +      P+  +
Sbjct: 214 PHEVLLVADSLTGQDAVNLARSFDERVGLTGIVLTRVDGDGRGGAALSMRQVTGKPIKLI 273

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE  + LE F     +  I G  D
Sbjct: 274 GTGEKTDALEDFHPSRIAGRILGMGD 299


>gi|302872551|ref|YP_003841187.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575410|gb|ADL43201.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 371

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 149/313 (47%), Gaps = 26/313 (8%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           S  ++ I++L K   S    LKE I  +   S+   +  R+   D++  + I   V  +I
Sbjct: 75  SLQMTQIKELEKKIDSLEKALKEVIKKEQEESQHTKEASRKNFLDVMRENLIKNGVENEI 134

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           V+ LL+   + D S+  ++  +   I  ML   + P ++D S  P ++  VG  GVGKTT
Sbjct: 135 VDILLS-NVSGDGSINTIVNSMYREIKNMLGS-AAPLSFD-SKFPKIVFFVGPTGVGKTT 191

Query: 127 VIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWAD----RTSADFVCSEIGSDAAAL 181
            I K++ K M + G +V     DT+R AA++QLK +A+    +T   +   E      +L
Sbjct: 192 TIAKIAAKLMFEDGKRVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEVDEYDGIIESL 251

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A            DV+++DTAGR H N   M  +   +          P  V  +L ATT
Sbjct: 252 A----------DSDVVLVDTAGRSHKNQEHMDELKAYVA------KANPDEVFLLLSATT 295

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEP 300
             +  ++V   ++      +I+TK+D  +  G ++ I    + P+ ++  G+ + +D+E 
Sbjct: 296 QPSVFKEVVNTYSFLDNYKVIVTKVDEVSAYGNILNIRYFTQKPIAYITTGQNVPDDIEQ 355

Query: 301 FVAKDFSAVITGC 313
           F  + F+ +I G 
Sbjct: 356 FNPEQFAKLIIGS 368


>gi|146103857|ref|XP_001469660.1| signal recognition particle receptor like protein [Leishmania
           infantum]
 gi|134074030|emb|CAM72771.1| putative signal recognition particle receptor like protein
           [Leishmania infantum JPCM5]
          Length = 605

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 32/281 (11%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMP---- 98
           +L + LI  ++ V VA+ + + +      K +     LY   E      + ++L P    
Sbjct: 324 DLREKLIAKNVAVEVAEHVCKSVEASLAGKRLGTFDSLYKTVEDAMMASLRRILQPKCEV 383

Query: 99  --LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             L        + +P+ I++ GVNGVGK+T + K++  +   G  V+LAAGDTFR  A++
Sbjct: 384 NLLRDVAAAKAAGKPYSIVLCGVNGVGKSTSLAKITYWLQQNGNSVLLAAGDTFRHGAVE 443

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL +      A       G+D +A+A  A  QA  + +DV++IDTAGR+ ++   M  + 
Sbjct: 444 QLGVHGRCLGAPVFQLGYGTDPSAVAAAAMAQASKQHIDVVMIDTAGRMQDHESRMRALA 503

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTK 265
           K+I        + P  VL V +A  G N + Q+  F+              G  G+++TK
Sbjct: 504 KLIH------DNQPDLVLFVGEALVGNNGIDQLRKFNQCLVDFAPVGSRSRGIDGIVLTK 557

Query: 266 MDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL---EPFV 302
            D    + G  + +V     P+ F+GVG+   DL   EP V
Sbjct: 558 FDTIDDKVGAALSMVYELGQPIVFVGVGQTYQDLKVIEPEV 598


>gi|322503724|emb|CBZ38810.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 605

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 32/281 (11%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMP---- 98
           +L + LI  ++ V VA+ + + +      K +     LY   E      + ++L P    
Sbjct: 324 DLREKLIAKNVAVEVAEHVCKSVEASLAGKRLGTFDSLYKTVEDAMMASLRRILQPKCEV 383

Query: 99  --LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             L        + +P+ I++ GVNGVGK+T + K++  +   G  V+LAAGDTFR  A++
Sbjct: 384 NLLRDVAAAKAAGKPYSIVLCGVNGVGKSTSLAKITYWLQQNGNSVLLAAGDTFRHGAVE 443

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL +      A       G+D +A+A  A  QA  + +DV++IDTAGR+ ++   M  + 
Sbjct: 444 QLGVHGRCLGAPVFQLGYGTDPSAVAAAAMAQASKQHIDVVMIDTAGRMQDHESRMRALA 503

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTK 265
           K+I        + P  VL V +A  G N + Q+  F+              G  G+++TK
Sbjct: 504 KLIH------DNQPDLVLFVGEALVGNNGIDQLRKFNQCLVDFAPVGSRSRGIDGIVLTK 557

Query: 266 MDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL---EPFV 302
            D    + G  + +V     P+ F+GVG+   DL   EP V
Sbjct: 558 FDTIDDKVGAALSMVYELGQPIVFVGVGQTYQDLKVIEPEV 598


>gi|167045712|gb|ABZ10359.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine bacterium HF4000_APKG2098]
          Length = 448

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 140/291 (48%), Gaps = 16/291 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           LT  F      LK+  +  ++  ++D+G+R+ +   L+ +D+ + VA+++++ +  K   
Sbjct: 5   LTSKFEEIFSSLKKAPS--LNEAQVDEGLRK-IRQALLEADVALPVAKELIKNIKPKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++       Q ++  V + + K+L       N + S  P  +++VG+ G GKTT   KL
Sbjct: 62  QEIIKSTTPGQMIVKVVFDEVVKILGDTKSELNLN-SVPPICVMLVGLQGSGKTTTAAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +  +   K ++ + D +R AA +QL I  ++ S   +          +   A   A 
Sbjct: 121 AKYLEKNNKKKSLMVSLDVYRPAAQEQLNILGEKNSIQTLPIVKDQLPINIVKRALNAAS 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D +I DTAGR   +  +M  I K I+ L       P   + V D+ TGQ A+   +
Sbjct: 181 LSGADAIIFDTAGRTQIDLSMMNEI-KEIKSLAN-----PIETILVADSLTGQVAVNVAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            F      TG+I+T++DG  RGG  + +      P+ F+G GE I  L+ F
Sbjct: 235 EFKKAVDLTGIILTRVDGDGRGGAALSMKFATNTPIKFMGTGEKIEQLDVF 285


>gi|319407814|emb|CBI81465.1| signal recognition particle protein [Bartonella sp. 1-1C]
          Length = 515

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 13/209 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT---S 166
           P VI++VG+ G GKTT   KL+K++ D    KV++A+ DT R AA +QL+   ++    S
Sbjct: 100 PVVIMLVGLQGSGKTTTTAKLAKRLIDKHNKKVLVASLDTRRPAAQEQLRQLGEQVQVPS 159

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +  +   D +A A +A   A+    DV+++DTAGR H +  LM  + K I+   +  
Sbjct: 160 LPIIPDQSPVDISARAVQA---AKLGGYDVVLLDTAGRNHIDEALMLEL-KEIKAASQ-- 213

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+ ++ V D+ TGQ+A+     F    G TG+I+T+M+   RGG  + +      P+
Sbjct: 214 ---PYEIMLVADSLTGQDAVNLARSFDERIGITGIILTRMESDGRGGAALSMRAVTGKPI 270

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             +G GE ++ LE F     +  I G  D
Sbjct: 271 KAIGTGEKMDALEEFHPSRIADRILGMGD 299


>gi|27375592|ref|NP_767121.1| signal recognition particle protein [Bradyrhizobium japonicum USDA
           110]
 gi|27348729|dbj|BAC45746.1| signal recognition particle protein [Bradyrhizobium japonicum USDA
           110]
          Length = 630

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 136/283 (48%), Gaps = 21/283 (7%)

Query: 43  DGVREELEDLLIRSDIGVAV----AQKIVEELLTKRYAKDVS----VQRVLYDVSELIHK 94
           D    E+   L+ +D+ + V     +++ E+ +     K V+    V ++++D  ELI+ 
Sbjct: 143 DAAMREVRRALLEADVALEVVRSFTERVREQAIGATVVKSVTPGQMVVKIVHD--ELINT 200

Query: 95  MLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLAAGDTFRS 152
           +    ++    D +  P V I++VG+ G GKTT   KL+++M      KV++A+ D +R 
Sbjct: 201 LG---AEGQTIDINSVPPVPIMMVGLQGSGKTTTTAKLARRMVQRDRRKVLMASLDVYRP 257

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA++QL +         +    G   A +A  A +  +    DV+++DTAGR   +  +M
Sbjct: 258 AAMEQLAVLGRDLDIPTLPIVAGQQPAQIAKRALEAGKLGGYDVVLLDTAGRTTLDEDMM 317

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
           A    +           PH VL V D+ TGQ+A+     F    G TG+++T++DG  RG
Sbjct: 318 AEAAAIKAAAN------PHEVLLVADSLTGQDAVNLARAFDERVGLTGIVLTRVDGDGRG 371

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +      P+  +G GE  + LE F     +  I G  D
Sbjct: 372 GAALSMRAVTGKPIKLIGTGEKTDALEDFHPDRIAGRILGMGD 414


>gi|312126840|ref|YP_003991714.1| flagellar biosynthetic protein flhf [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776859|gb|ADQ06345.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 372

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 151/322 (46%), Gaps = 43/322 (13%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGI----------TDIISSRRLDDGVREELEDLLIRSD 57
           S  ++ I++L K   S    LKE I          T  +S +   + +RE L        
Sbjct: 75  SLQMTQIKELEKKIDSLEKALKEVIKKEQEEGISQTKELSKKNFLNVMRENL-------- 126

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVI 114
           I   V  +IV+ LL+   A + S+  V+ ++ + I  ML    PLS  FN   S  P ++
Sbjct: 127 IKNGVENEIVDMLLSNLSA-EASINSVVNNMYKEIKNMLGAAAPLS--FN---SKLPKIV 180

Query: 115 LVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCS 172
             VG  GVGKTT I K++ K M + G KV     DT+R AA++QLK +A+  +    V  
Sbjct: 181 FFVGPTGVGKTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWY 240

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E+  D      E F  +     DV+++DTAGR H N   M  +   +          P  
Sbjct: 241 EV--DEYDRIIENFSDS-----DVVLVDTAGRSHKNQEHMDELKAFVT------KANPDE 287

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V  +L ATT  +  ++V   ++      +I+TK+D  +  G ++ I    + P+ ++  G
Sbjct: 288 VFLLLSATTQPSVFKEVVNTYSFLDDYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTG 347

Query: 293 EGI-NDLEPFVAKDFSAVITGC 313
           + + +D+E F  + F+ +I G 
Sbjct: 348 QNVPDDIEQFNPEQFAKLIIGS 369


>gi|114328274|ref|YP_745431.1| signal recognition particle, subunit FFH/SRP54 [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316448|gb|ABI62508.1| signal recognition particle, subunit FFH/SRP54 [Granulibacter
           bethesdensis CGDNIH1]
          Length = 455

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 10/237 (4%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
            V ++++D   LI ++    + P N + +  P  +L+VG+ G GKTT  GKL+ +++   
Sbjct: 73  QVMKIVHDA--LIEQLGGAGAVPLNLN-AVAPVPVLMVGLQGSGKTTTSGKLALRLAKKE 129

Query: 140 LK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
            + V+LA+ DT R AA  QL+  A++     +    G     +A  A +  + +  D++I
Sbjct: 130 RRRVLLASLDTQRPAAQLQLQQLAEQAGVASLPIIQGQTPVEIARRAMETGRREVYDIVI 189

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL  +  LM  + K IR         P   L V+DA TGQ+A+     F+   G 
Sbjct: 190 LDTAGRLAIDEELMEEV-KAIRA-----ETNPSETLLVVDAMTGQDAVNTARAFNEAVGV 243

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG++MT+MDG ARGG  + +      P+   G GE ++ LE F  +  +  I G  D
Sbjct: 244 TGIVMTRMDGDARGGAALSMRAVTGAPIKLTGSGEKLDALEDFHPERVAGRILGLGD 300


>gi|319404853|emb|CBI78454.1| signal recognition particle protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 515

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 127/249 (51%), Gaps = 27/249 (10%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM-----LMPLSKPFNWDFSHRPHVILV 116
           V +K V   + K       V ++++D  EL+H +     L  L+ P        P VI++
Sbjct: 55  VREKAVGTTIVKSIKPGQMVVKIVHD--ELVHMLGGEGVLSDLNAPA-------PVVIML 105

Query: 117 VGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT---SADFVCS 172
           VG+ G GKTT   KL+K++ D    KV++A+ DT R AA +QL+   ++    S   +  
Sbjct: 106 VGLQGSGKTTTTAKLAKRLRDKHNKKVLIASLDTRRPAAQEQLRQLGEQVQVPSLPIIPD 165

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +   D +A A +A   A+    DV+++D AGR H +  LM  + K I+   +     P+ 
Sbjct: 166 QSPVDISARAVQA---AKLGGYDVVLLDAAGRNHIDEALMLEL-KEIKAASQ-----PYE 216

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           ++ V D+ TGQ+A+     F    G TG+I+T+M+   RGG  + +      P+  +G G
Sbjct: 217 IMLVADSLTGQDAVNLARSFDERIGITGIILTRMESDGRGGAALSMRAVTGKPIKAIGTG 276

Query: 293 EGINDLEPF 301
           E ++ LE F
Sbjct: 277 EKMDALEEF 285


>gi|54299348|ref|NP_982463.2| AAL079Cp [Ashbya gossypii ATCC 10895]
 gi|51890935|gb|AAS50287.2| AAL079Cp [Ashbya gossypii ATCC 10895]
          Length = 586

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 147/314 (46%), Gaps = 59/314 (18%)

Query: 36  ISSRRLDDG----VREELEDLLIRSDIGVAVA----QKIVEELLTKRYAKDVSVQRVLYD 87
           + ++ +D+G    + E+ +  LI  ++  A A     ++ E+L+  + A   SV++   D
Sbjct: 267 LGNKTIDEGDLHAILEKFKKHLIGKNVAPAAADYLTSRVSEQLVGLKTASWTSVEQTARD 326

Query: 88  VSE--------------LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             E              L+H++   +      D    P+V  +VGVNGVGK+T + KL+ 
Sbjct: 327 ALEQALISILTPGVSVDLLHEIQKKVGNKV--DAKCDPYVFSIVGVNGVGKSTNLSKLAF 384

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWAD-----------RTSAD------------FV 170
            +     KV++ A DTFRS A++QL++  +           R S +            F 
Sbjct: 385 WLLQNKFKVLIVACDTFRSGAVEQLRVHVENLAQLTDDNHVRGSKNKRGKSGNDAVELFE 444

Query: 171 CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
               GSD    +A +A K A+ ++ DV+++DTAGR HN++ LM+ +          D   
Sbjct: 445 AGYGGSDLVTKIAKQAIKYAREQQFDVVLMDTAGRRHNDATLMSPLKSFA------DQAK 498

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTG----LIMTKMDGTARG-GGLIPIVVTHKI 284
           P  ++ V +A  G ++++Q + F+   G        I++K D      G ++ +V    I
Sbjct: 499 PDKIIMVGEALVGTDSVQQAKNFNQAFGKDRNLDFFIISKCDTVGEMLGTMVNMVYATGI 558

Query: 285 PVYFLGVGEGINDL 298
           P+ F+GVG+   DL
Sbjct: 559 PILFIGVGQTYTDL 572


>gi|297180325|gb|ADI16543.1| signal recognition particle GTPase [uncultured bacterium
           HF4000_009C18]
          Length = 448

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 142/295 (48%), Gaps = 16/295 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT  F      LK+  +  ++  ++++G+R+ +   L+ +D+ + VA+++++ +  
Sbjct: 1   MFENLTSKFEEIFSSLKKAPS--LNEAQVEEGLRK-IRQALLEADVALPVAKELIKNIKP 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K   +++       Q ++  V + I K+L       N + +  P  +++VG+ G GKTT 
Sbjct: 58  KAIGQEIIRSTTPGQMIVKVVFDEIVKILGDTQSELNLN-AVPPVCLMLVGLQGSGKTTT 116

Query: 128 IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL+K +  +   K ++ + D +R AA +QL I  ++ S   + +        +   A 
Sbjct: 117 AAKLAKYLEQNNKKKSLMVSLDVYRPAAQEQLNILGEKNSIQTLPTVKDQLPLDIVKRAL 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A    VDV+I DTAGR   +  +M  I K I+ +       P   + V D+ TGQ A+
Sbjct: 177 NAASLSGVDVIIFDTAGRTQIDLSMMNEI-KEIKSMAN-----PTETILVADSLTGQVAV 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
              + F      T +I+T++DG  RGG  + +      P+ F+G GE I  L+ F
Sbjct: 231 NVAQEFKKTVDLTSIILTRVDGDGRGGAALSMKFATNTPIKFMGTGEKIEQLDVF 285


>gi|74024974|ref|XP_829053.1| signal recognition particle receptor subunit alpha [Trypanosoma
           brucei]
 gi|70834439|gb|EAN79941.1| signal recognition particle receptor alpha subunit, putative
           [Trypanosoma brucei]
          Length = 582

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 18/203 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           ++P+ I++ GVNGVGK+T + K++  +   G  VM+AAGDTFR  A++QL++       D
Sbjct: 373 NKPYSIVLCGVNGVGKSTTLAKITYWLQQNGHTVMIAAGDTFRHGAVEQLEVHGRCLGVD 432

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                 G+D +A+A  A  +A     DV++IDTAGR+ ++   M  + K+I        +
Sbjct: 433 VFQMGYGTDPSAVAAAAISRATRDGCDVVMIDTAGRMQDHESRMRALAKLIH------DN 486

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTKMDGT-ARGGGLI 276
            P  VL V +A  G   + Q+  F+              G  G+++TK D    + G  +
Sbjct: 487 QPDLVLFVGEALVGNTGVDQLRRFNQCLVDFVPVGSVPRGIDGIVLTKFDTIDDKVGAAV 546

Query: 277 PIVVTHKIPVYFLGVGEGINDLE 299
            +V     P+ F+G G+   DL+
Sbjct: 547 SMVYELGQPIVFVGAGQTYQDLK 569


>gi|58264896|ref|XP_569604.1| signal recognition particle binding protein [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|134109623|ref|XP_776926.1| hypothetical protein CNBC4160 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259606|gb|EAL22279.1| hypothetical protein CNBC4160 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57225836|gb|AAW42297.1| signal recognition particle binding protein, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 674

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 105/217 (48%), Gaps = 35/217 (16%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA--- 167
           P+ +  VGVNGVGK+T + K+   +   GL+V++AA DTFRS A++QL++      A   
Sbjct: 450 PYTLTFVGVNGVGKSTNLSKVCFWLLQNGLRVLIAACDTFRSGAVEQLRVHVRNLGALGE 509

Query: 168 ----------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
                     +      G DAA +A +A   A+    DV++IDTAGR+ +N  LM  + K
Sbjct: 510 EMGQGQGKRIELFERGYGKDAAGIAKDAIAYAKEHAFDVVLIDTAGRMQDNEPLMRALAK 569

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH------------AVA---GTTGLI 262
           ++ V      + P  ++ V +A  G  A+ Q+  F              VA   G  G+I
Sbjct: 570 LVTV------NNPDKIVFVGEALVGNEAVDQLTKFDRALRDFSGAGVGGVARKRGIDGII 623

Query: 263 MTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +TK D    + G  + +      P+ F+G G+   DL
Sbjct: 624 LTKFDTIDDKVGAALSMTYITGQPILFVGCGQTYTDL 660


>gi|261334999|emb|CBH17993.1| signal recognition particle receptor alpha subunit, putative
           [Trypanosoma brucei gambiense DAL972]
          Length = 582

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 18/203 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           ++P+ I++ GVNGVGK+T + K++  +   G  VM+AAGDTFR  A++QL++       D
Sbjct: 373 NKPYSIVLCGVNGVGKSTTLAKITYWLQQNGHTVMIAAGDTFRHGAVEQLEVHGRCLGVD 432

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                 G+D +A+A  A  +A     DV++IDTAGR+ ++   M  + K+I        +
Sbjct: 433 VFQMGYGTDPSAVAAAAISRATRDGCDVVMIDTAGRMQDHESRMRALAKLIH------DN 486

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTKMDGT-ARGGGLI 276
            P  VL V +A  G   + Q+  F+              G  G+++TK D    + G  +
Sbjct: 487 QPDLVLFVGEALVGNTGVDQLRRFNQCLVDFVPVGSVPRGIDGIVLTKFDTIDDKVGAAV 546

Query: 277 PIVVTHKIPVYFLGVGEGINDLE 299
            +V     P+ F+G G+   DL+
Sbjct: 547 SMVYELGQPIVFVGAGQTYQDLK 569


>gi|172707|gb|AAA35093.1| SRP receptor alpha-chain homologue [Saccharomyces cerevisiae]
          Length = 621

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 35/223 (15%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163
           P+V  +VGVNGVGK+T + KL+  +     KV++ A DTFRS A++QL++  +       
Sbjct: 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 456

Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
                       +T  D+V        GSD    +A +A K A+ +  D++++DTAGR H
Sbjct: 457 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYARDQNFDIVLMDTAGRRH 516

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262
           N+  LM+ +          D   P  ++ V +A  G ++++Q + F+   G        I
Sbjct: 517 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFI 570

Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           ++K D      G ++ +V    IP+ F+GVG+   DL     K
Sbjct: 571 ISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613


>gi|299753684|ref|XP_002911906.1| signal recognition particle binding protein [Coprinopsis cinerea
           okayama7#130]
 gi|298410414|gb|EFI28412.1| signal recognition particle binding protein [Coprinopsis cinerea
           okayama7#130]
          Length = 661

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 33/215 (15%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA-------- 162
           P+ I  VGVNGVGK+T + K+   +   GL+V++AA DTFRS A++QL++          
Sbjct: 438 PYSITFVGVNGVGKSTNLSKVCFWLIQNGLRVLIAACDTFRSGAVEQLRVHVRNLGMLGV 497

Query: 163 -----DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
                 +   +      G DAA +A EA   A+    DV++IDTAGR+ +N  LM  + K
Sbjct: 498 NGAGDSKGRVELFERGYGKDAAGIAKEAILYAKDNDFDVVLIDTAGRMQDNEPLMRALAK 557

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-------------AGTTGLIMT 264
           ++ V      + P  ++ V +A  G  A+ Q+  F                 G  G+++T
Sbjct: 558 LVAV------NNPDKIIFVGEALVGNEAVDQLTKFDRALRDFSSASGAGKGRGIDGMLVT 611

Query: 265 KMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           K D    + G  + +      P+ F+G G+   DL
Sbjct: 612 KWDTVDDKVGAALSMTYVTGQPIIFVGCGQTYTDL 646


>gi|312621589|ref|YP_004023202.1| flagellar biosynthetic protein flhf [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202056|gb|ADQ45383.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 372

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 152/317 (47%), Gaps = 33/317 (10%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGI-----TDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           S  L+ I++L +   S    LKE I      DI  ++ L    ++   D++  + I   V
Sbjct: 75  SLQLTQIKELERKIDSLEKILKEVIKKEQEEDISQTKELS---KKNFIDVMRENLIKNGV 131

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGV 119
             +I++ L +   + + S+  V+ ++ + I  ML    PLS  FN   S  P ++  VG 
Sbjct: 132 ESEIIDMLFS-NLSGEASINNVVNNIYKEIKNMLGVAAPLS--FN---SKIPKIVFFVGP 185

Query: 120 NGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSD 177
            GVGKTT I K++ K M + G KV     DT+R AA++QLK +A+  +    V  E+  D
Sbjct: 186 TGVGKTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEV--D 243

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 E F  +     DV+++DTAGR H N   M  +   +          P  V  +L
Sbjct: 244 EYDRIIENFSDS-----DVVLVDTAGRSHKNQEHMDELKAFVA------KANPDEVFLLL 292

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-N 296
            ATT  +  ++V   ++      +I+TK+D  +  G ++ I    + P+ ++  G+ + +
Sbjct: 293 SATTQPSVFKEVVNTYSFLNDYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTGQNVPD 352

Query: 297 DLEPFVAKDFSAVITGC 313
           D+E F  + F+ +I G 
Sbjct: 353 DIEQFNPEQFAKLIIGS 369


>gi|299541618|ref|ZP_07051967.1| signal recognition particle-docking protein FtsY [Lysinibacillus
           fusiformis ZC1]
 gi|298725853|gb|EFI66468.1| signal recognition particle-docking protein FtsY [Lysinibacillus
           fusiformis ZC1]
          Length = 124

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 80/127 (62%), Gaps = 9/127 (7%)

Query: 56  SDIGVAVAQKIVEEL---LTKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           +D+GV   QK++ +L     ++  KD ++   ++ +D++ L+  +  PL+ P N      
Sbjct: 2   ADVGVDTTQKLIRQLEQHADRKALKDSALLFDKLQHDMAALLQDVEQPLT-PVN---PAG 57

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VIL+VGVNGVGKTT IGK++++    G  VMLAAGDTFR+AA++QL++W +R     +
Sbjct: 58  PFVILMVGVNGVGKTTTIGKMAQQFKQQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVI 117

Query: 171 CSEIGSD 177
               G+D
Sbjct: 118 AQHTGAD 124


>gi|254230467|ref|ZP_04923844.1| SRP54-type protein, GTPase domain [Vibrio sp. Ex25]
 gi|151937016|gb|EDN55897.1| SRP54-type protein, GTPase domain [Vibrio sp. Ex25]
          Length = 326

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 84/170 (49%), Gaps = 6/170 (3%)

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           + D +R AAI QL+  A     DF  S        +A  A   A+ K  DVLI+DTAGRL
Sbjct: 2   SADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDHAKKKFYDVLIVDTAGRL 61

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             +  +M  I  +   +       P   L V+DA TGQ+A    + F      TG+++TK
Sbjct: 62  AIDEEMMGEIKDLHAAIN------PVETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTK 115

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 116 VDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEPFHPDRVASRILGMGD 165


>gi|255718069|ref|XP_002555315.1| KLTH0G06380p [Lachancea thermotolerans]
 gi|238936699|emb|CAR24878.1| KLTH0G06380p [Lachancea thermotolerans]
          Length = 586

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 35/217 (16%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163
           P++  VVGVNGVGK+T + KL+  +    L+V++ A DTFRS A++QL++  +       
Sbjct: 362 PYIFSVVGVNGVGKSTNLSKLAFWLLQNNLRVLVVACDTFRSGAVEQLRVHVENLAQLTD 421

Query: 164 ----RTSAD------------FVCSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
               R S +            F     GSD    +A +A K A  +  DV+++DTAGR H
Sbjct: 422 EAHIRGSKNRRGKSGNDHIELFEAGYGGSDLVTKIAKQAIKYASDQNFDVVLMDTAGRRH 481

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG----LI 262
           N+  LM+ +          D   P  ++ V +A  G ++++Q + F+A  G        I
Sbjct: 482 NDPTLMSPLKPFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNAAFGKERNLDFFI 535

Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
           ++K D      G ++ +V    IP+ F+GVG+   DL
Sbjct: 536 ISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDL 572


>gi|157877214|ref|XP_001686937.1| signal recognition particle receptor like protein [Leishmania major
           strain Friedlin]
 gi|68130012|emb|CAJ09320.1| putative signal recognition particle receptor like protein
           [Leishmania major strain Friedlin]
          Length = 605

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 133/281 (47%), Gaps = 32/281 (11%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMP---- 98
           +L + LI  ++ V VA+ + + +      K +     LY   E      + ++L P    
Sbjct: 324 DLREKLIVKNVAVEVAEHVCKSVEASLAGKRLGTFDSLYKTVEDAMMASLRRILQPKCEV 383

Query: 99  --LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             L        + +P+ I++ GVNGVGK+T + K++  +   G  V+LAAGDTFR  A++
Sbjct: 384 NLLRNVAAAKAAGKPYSIVLCGVNGVGKSTSLAKIAYWLQQNGNSVLLAAGDTFRHGAVE 443

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL +              G+D + +A  A  QA  + +DV+++DTAGR+ ++   M  + 
Sbjct: 444 QLGVHGRCLGVPIFQLGYGTDPSTVAAAAMAQASKQHIDVVMVDTAGRMQDHESRMRALA 503

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-----------AVAGTTGLIMTK 265
           K+I        + P  VL V +A  G N + Q+  F+            + G  G+++TK
Sbjct: 504 KLIH------DNQPDLVLFVGEALVGNNGIDQLRKFNQCLVDFAPVGSQLRGIDGIVLTK 557

Query: 266 MDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL---EPFV 302
            D    + G  + +V     P+ F+GVG+   DL   EP V
Sbjct: 558 FDTIDDKVGAALSMVYELGQPIVFVGVGQTYQDLKVIEPEV 598


>gi|312876519|ref|ZP_07736502.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796730|gb|EFR13076.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 372

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 151/322 (46%), Gaps = 43/322 (13%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGI----------TDIISSRRLDDGVREELEDLLIRSD 57
           S  ++ I++L K   S    LKE I          T  +S +   D +RE L        
Sbjct: 75  SLQMTQIKELEKKIDSLEKALKEVIKKEQEEGINQTKELSKKNFLDVMRENL-------- 126

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVI 114
           I   V  +IV+ LL+   + + S+  V+  + + I  ML    PLS  FN  F   P ++
Sbjct: 127 IKNGVENEIVDMLLS-NVSGEASINGVVNFMYKEIKNMLGAAAPLS--FNSKF---PKIV 180

Query: 115 LVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCS 172
             VG  GVGKTT I K++ K M + G KV     DT+R AA++QLK +A+  +    V  
Sbjct: 181 FFVGPTGVGKTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWY 240

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E+  D      E+F  +     DV+++DTAGR H N   M  +   +          P  
Sbjct: 241 EV--DEYDRIIESFADS-----DVVLVDTAGRSHKNQEHMDELKAFVA------KANPDE 287

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V  +L ATT  +  ++V   ++      +I+TK+D  +  G ++ I    + P+ ++  G
Sbjct: 288 VFLLLSATTQPSVFKEVVNTYSFLDDYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTG 347

Query: 293 EGI-NDLEPFVAKDFSAVITGC 313
           + + +D+E F  + F+ +I G 
Sbjct: 348 QNVPDDIEQFNPEQFAKLIIGS 369


>gi|50305435|ref|XP_452677.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641810|emb|CAH01528.1| KLLA0C10714p [Kluyveromyces lactis]
          Length = 600

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 110/218 (50%), Gaps = 37/218 (16%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163
           P+V  VVGVNGVGK+T + KL+  +    LKV++ A DTFRS A++QL++  +       
Sbjct: 376 PYVFSVVGVNGVGKSTNLSKLAFWLLKNNLKVLIVACDTFRSGAVEQLRVHVENLAQLTD 435

Query: 164 ------------RTSADFV-CSEIGSDAAAL----AYEAFKQAQAKKVDVLIIDTAGRLH 206
                       +T  ++V   E G   + L    A +A K A+ +  DV+++DTAGR H
Sbjct: 436 HNHVRGTKNRRGKTGNEYVELFEGGYGGSNLVTKIAKQAIKYAKTEHFDVVLMDTAGRRH 495

Query: 207 NNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTG----L 261
           N++ LM+        LK     A P  ++ V +A  G ++++Q   F+   G        
Sbjct: 496 NDATLMSP-------LKSFAEQANPDKIIMVGEALVGTDSVQQAHNFNQAFGKERNLDFF 548

Query: 262 IMTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDL 298
           I++K D      G ++ +V    IP+ F+GVG+   DL
Sbjct: 549 IISKCDTVGELLGTMVNMVYATSIPILFIGVGQTYTDL 586


>gi|151942264|gb|EDN60620.1| Signal recognition particle (SRP) subunit [Saccharomyces cerevisiae
           YJM789]
 gi|259145529|emb|CAY78793.1| Srp101p [Saccharomyces cerevisiae EC1118]
          Length = 621

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 35/223 (15%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163
           P+V  +VGVNGVGK+T + KL+  +     KV++ A DTFRS A++QL++  +       
Sbjct: 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 456

Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
                       +T  D+V        GSD    +A +A K ++ +  D++++DTAGR H
Sbjct: 457 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRH 516

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262
           N+  LM+ +          D   P  ++ V +A  G ++++Q + F+   G        I
Sbjct: 517 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFI 570

Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           ++K D      G ++ +V    IP+ F+GVG+   DL     K
Sbjct: 571 ISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613


>gi|256271803|gb|EEU06834.1| Srp101p [Saccharomyces cerevisiae JAY291]
          Length = 621

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 35/223 (15%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163
           P+V  +VGVNGVGK+T + KL+  +     KV++ A DTFRS A++QL++  +       
Sbjct: 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 456

Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
                       +T  D+V        GSD    +A +A K ++ +  D++++DTAGR H
Sbjct: 457 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRH 516

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262
           N+  LM+ +          D   P  ++ V +A  G ++++Q + F+   G        I
Sbjct: 517 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFI 570

Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           ++K D      G ++ +V    IP+ F+GVG+   DL     K
Sbjct: 571 ISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613


>gi|6320498|ref|NP_010578.1| Srp101p [Saccharomyces cerevisiae S288c]
 gi|2507410|sp|P32916|SRPR_YEAST RecName: Full=Signal recognition particle receptor subunit alpha
           homolog; Short=SR-alpha; AltName: Full=Docking protein
           alpha; Short=DP-alpha
 gi|1230656|gb|AAB64468.1| Srp101p: Signal recognition particle receptor alpha subunit homolog
           (Swiss Prot. accession number P32916) [Saccharomyces
           cerevisiae]
 gi|285811307|tpg|DAA12131.1| TPA: Srp101p [Saccharomyces cerevisiae S288c]
          Length = 621

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 35/223 (15%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163
           P+V  +VGVNGVGK+T + KL+  +     KV++ A DTFRS A++QL++  +       
Sbjct: 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 456

Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
                       +T  D+V        GSD    +A +A K ++ +  D++++DTAGR H
Sbjct: 457 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRH 516

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262
           N+  LM+ +          D   P  ++ V +A  G ++++Q + F+   G        I
Sbjct: 517 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFI 570

Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           ++K D      G ++ +V    IP+ F+GVG+   DL     K
Sbjct: 571 ISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613


>gi|190404765|gb|EDV08032.1| hypothetical protein SCRG_00238 [Saccharomyces cerevisiae RM11-1a]
 gi|323355613|gb|EGA87433.1| Srp101p [Saccharomyces cerevisiae VL3]
          Length = 621

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 35/223 (15%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163
           P+V  +VGVNGVGK+T + KL+  +     KV++ A DTFRS A++QL++  +       
Sbjct: 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 456

Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
                       +T  D+V        GSD    +A +A K ++ +  D++++DTAGR H
Sbjct: 457 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRH 516

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262
           N+  LM+ +          D   P  ++ V +A  G ++++Q + F+   G        I
Sbjct: 517 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFI 570

Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           ++K D      G ++ +V    IP+ F+GVG+   DL     K
Sbjct: 571 ISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613


>gi|323309627|gb|EGA62835.1| Srp101p [Saccharomyces cerevisiae FostersO]
          Length = 621

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 35/223 (15%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163
           P+V  +VGVNGVGK+T + KL+  +     KV++ A DTFRS A++QL++  +       
Sbjct: 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 456

Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
                       +T  D+V        GSD    +A +A K ++ +  D++++DTAGR H
Sbjct: 457 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRH 516

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262
           N+  LM+ +          D   P  ++ V +A  G ++++Q + F+   G        I
Sbjct: 517 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFI 570

Query: 263 MTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           ++K D      G ++ +V    IP+ F+GVG+   DL     K
Sbjct: 571 ISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVK 613


>gi|313608189|gb|EFR84222.1| putative cell division protein [Listeria monocytogenes FSL F2-208]
          Length = 107

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 62/90 (68%)

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+ RV+ R  P+APH VL VLDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I
Sbjct: 5   KVKRVITREIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVI 64

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            I     IPV F+G+GE ++DL+ F A ++
Sbjct: 65  AIRNELDIPVKFVGLGEQMDDLQAFDANEY 94


>gi|225375344|ref|ZP_03752565.1| hypothetical protein ROSEINA2194_00969 [Roseburia inulinivorans DSM
           16841]
 gi|225212833|gb|EEG95187.1| hypothetical protein ROSEINA2194_00969 [Roseburia inulinivorans DSM
           16841]
          Length = 420

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 134/296 (45%), Gaps = 37/296 (12%)

Query: 30  EGITDIISSRRLDDGVRE------------ELED-----LLIRSDIGVAVAQKIVEELLT 72
           E +++I+  +  +DG RE             LE+     +L R+ +   V +K V ++L 
Sbjct: 125 ENLSNILEKKLSEDGAREAEMPVTPKASPKNLENFKFMKMLYRTMLNNDVNEKYVNQILD 184

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKL 131
           +      S   V   +S +  KM++ L +P   D S  +PHVI  VG  GVGKTT I K+
Sbjct: 185 EAEKVTNSGSNVDIILSNVYQKMILKLGEPNCIDLSGKKPHVIFFVGPTGVGKTTTIAKI 244

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD----FVCSEIGSDAAALAYEAF 186
           + K   +   KV +   DT+R AA +QLKI+A+   A     +   E+      LA    
Sbjct: 245 AAKYKVEHDKKVAMLTADTYRIAAAEQLKIYANILDAPVKIIYSAEELNQSLETLA---- 300

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
                 + D++ +DTAG  H N      I K++     LD      V  VL ATT    L
Sbjct: 301 ------EYDLVFVDTAGFSHKNEEQREDIKKLVN---GLDLKYEKEVYLVLSATTKYKDL 351

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301
            ++   +       +I TK+D T   G ++ I +     + ++  G+ + +DLE F
Sbjct: 352 MEIVDIYREIAEYKIIFTKLDETTSFGNILNIRLYSGADLSYMTNGQSVPDDLEVF 407


>gi|330907618|ref|XP_003295869.1| hypothetical protein PTT_03573 [Pyrenophora teres f. teres 0-1]
 gi|311332427|gb|EFQ96034.1| hypothetical protein PTT_03573 [Pyrenophora teres f. teres 0-1]
          Length = 1411

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 21/189 (11%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---- 165
           RP+V+ +VGVNGVGK+T + K++  +     +V++AA DTFRS A++QL++  DR     
Sbjct: 430 RPYVLSIVGVNGVGKSTNLSKIAFFLLQNHHRVLIAAADTFRSGAVEQLRVHVDRLKELS 489

Query: 166 -----SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                  +      G DAA +A +A   A     ++++IDTAGR HN+  LM+ + K  +
Sbjct: 490 QREGGQVELFEKGYGKDAANIAADAVTFATKNNFNIVLIDTAGRRHNDQRLMSSLEKFGK 549

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLI 276
           +        P  +L V +A  G +++ Q   F+A  G      G I++K D    G  L+
Sbjct: 550 LAN------PDKILMVGEALVGTDSVAQARNFNASFGVGRTLDGFIISKCDTV--GDMLL 601

Query: 277 PIVVTHKIP 285
             V   K P
Sbjct: 602 TDVFREKTP 610


>gi|170291202|ref|YP_001738018.1| GTP-binding signal recognition particle [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175282|gb|ACB08335.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 437

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 139/284 (48%), Gaps = 37/284 (13%)

Query: 48  ELEDLLIRSDIGV----AVAQKIVEELLTKRYA-----KDVSVQRVLYDVSELIHKMLMP 98
           E++  LI +D+ V     ++++I E  L +        +D++V+ +  +++ L+ +   P
Sbjct: 34  EVQRSLIEADVDVKLVLEISRRIKERALKESPPPGFSRRDLAVKILYEELTNLLGRK--P 91

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA---I 155
              P     S + +VI++VG+ G GKTT + KL+  +S    KV + + D  R A+   I
Sbjct: 92  AEIPME---SKKTNVIMMVGIEGSGKTTTVAKLAFWLSKRFGKVGIISADVMRPASKLQI 148

Query: 156 DQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           +QL         D  V S+   D   +  E  +  + ++ + +IIDTAGR  + S LM+ 
Sbjct: 149 EQL------VGPDIPVFSKESKDPVEIMREGIEFFKRERYNFVIIDTAGRHKDESSLMS- 201

Query: 215 IGKMIRVLKRLDPH---APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
                     LD +    P  V+  +D T GQ A  Q   F       G+I+TK+DG A+
Sbjct: 202 ---------ELDAYREIGPDLVILTIDGTIGQAAYAQARAFAEKVPVGGVIVTKLDGAAK 252

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GGG +  V     P+ F+G GE ++DLE F  + F + + G  D
Sbjct: 253 GGGALSAVAASGAPILFIGTGERVDDLERFDPERFVSRLLGGGD 296


>gi|222530118|ref|YP_002574000.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222456965|gb|ACM61227.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 372

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 150/315 (47%), Gaps = 33/315 (10%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGI-----TDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            L+ I++L +   S    LKE I      DI  ++ L    ++   D++  + I   V  
Sbjct: 77  QLTQIKELERKIDSLEKVLKEVIKKEQEEDISQTKELS---KKNFIDVMRENLIKNGVES 133

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNG 121
           +I+  L +   + + S+  V+ ++ + I  ML    PLS  FN   S  P ++  VG  G
Sbjct: 134 EIINMLFS-NLSGEASINNVVNNIYKGIKNMLGVAAPLS--FN---SKIPKIVFFVGPTG 187

Query: 122 VGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAA 179
           VGKTT I K++ K M + G KV     DT+R AA++QLK +A+  +    V  E+  D  
Sbjct: 188 VGKTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEV--DEY 245

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
               E F  +     DV+++DTAGR H N   M  +   +          P  V  +L A
Sbjct: 246 DRIIENFSDS-----DVVLVDTAGRSHKNQEHMDELKAFVA------KANPDEVFLLLSA 294

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298
           TT  +  ++V   ++      +I+TK+D  +  G ++ I    + P+ ++  G+ + +D+
Sbjct: 295 TTQPSVFKEVVNTYSFLNDYKVIVTKVDEVSTYGNILNIRYFTQKPIAYITTGQNVPDDI 354

Query: 299 EPFVAKDFSAVITGC 313
           E F  + F+ +I G 
Sbjct: 355 EQFNPEQFAKLIIGS 369


>gi|322490946|emb|CBZ26210.1| putative signal recognition particle receptor like protein
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 605

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 133/281 (47%), Gaps = 32/281 (11%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMP---- 98
           +L + LI  ++ V VA+ + + +      K +     LY   E      + ++L P    
Sbjct: 324 DLREKLIAKNVAVEVAEHVCKSVEASLAGKRLGTFDSLYKTVEDAMMASLRRILQPKREV 383

Query: 99  --LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             L        + +P+ I++ GVNGVGK+T + K++  +   G  V+LAAGDTFR  A++
Sbjct: 384 NLLRDVAAAKAAGKPYSIVLCGVNGVGKSTSLAKITYWLQQNGNSVLLAAGDTFRHGAVE 443

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL +              G+D +A+A  A  QA  + +DV+++DTAGR+ ++   M  + 
Sbjct: 444 QLGVHGRCLGVPVFQLGYGTDPSAVAAAAMAQANKQHIDVVMVDTAGRMQDHESRMRALA 503

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTK 265
           K+I        + P  VL V +A  G N + Q+  F+              G  G+++TK
Sbjct: 504 KLIH------DNQPDLVLFVGEALVGNNGIDQLRKFNQCLVDFAPVGSRSRGIDGIVLTK 557

Query: 266 MDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL---EPFV 302
            D    + G  + +V     P+ F+GVG+   DL   EP V
Sbjct: 558 FDTIDDKVGAALSMVYELGQPIVFVGVGQTYQDLKVIEPEV 598


>gi|225620952|ref|YP_002722210.1| signal recognition particle GTPase [Brachyspira hyodysenteriae WA1]
 gi|225215772|gb|ACN84506.1| Signal recognition particle GTPase [Brachyspira hyodysenteriae WA1]
          Length = 451

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 12/272 (4%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPF 103
           +++ L+ +D+ +  A K +EE   +   K+         + + DV + +  M+       
Sbjct: 34  IKEALLSADVSLEAADKFLEEATNRAIGKEKLEGVEPANQFVADVHDTLVNMIGEGESGL 93

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
             +   +  + L+ G+ G GKTT   KL+K   D   +VML   D  R AA++QL + A 
Sbjct: 94  KLEPVEKTTITLLFGLQGSGKTTTSAKLAKYYKDK-RRVMLVGLDVHRPAAMEQLAVLAR 152

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                +        A  +  +A   A+ ++ +++++DTAGRL  +  +M  + +++    
Sbjct: 153 EVGVPYHIDTKEKKAYKILKKALSIAKKEQYNMILVDTAGRLEIDEEMMLELRRVVN--- 209

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
               +    +L V+D+T GQ+     + F    G  G+I+TK D   RGG  + +     
Sbjct: 210 --SANVTEKLL-VVDSTAGQSVYDVAKSFQNNIGINGVILTKFDSGVRGGAALSLKYATG 266

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             V F+GVGE ++D++ F AK  +  I G  D
Sbjct: 267 SSVKFVGVGEHLDDIDVFDAKRVAGQILGMGD 298


>gi|309800530|ref|ZP_07694681.1| signal recognition particle protein [Streptococcus infantis SK1302]
 gi|308115841|gb|EFO53366.1| signal recognition particle protein [Streptococcus infantis SK1302]
          Length = 223

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 6/176 (3%)

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
           L +++ A D +R AAIDQLK    +             A  +  +  +QA+A   D ++I
Sbjct: 2   LVLLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQAKANHNDYVLI 61

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL  + +LM      +R +K L    P+ +L V+DA  GQ A      F+A    T
Sbjct: 62  DTAGRLQIDELLM----NELRDVKAL--AQPNEILLVIDAMIGQEAANVAREFNAQLEVT 115

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G+I+TK+DG  RGG  + +      P+ F G GE I D+E F     ++ I G  D
Sbjct: 116 GVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMASRILGMGD 171


>gi|221057428|ref|XP_002261222.1| signal recognition particle receptor alpha subunit [Plasmodium
           knowlesi strain H]
 gi|194247227|emb|CAQ40627.1| signal recognition particle receptor alpha subunit, putative
           [Plasmodium knowlesi strain H]
          Length = 595

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 114/203 (56%), Gaps = 20/203 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           + I+ +GVNGVGK+T + K+   +   G LK+M+AA DTFR+ A++QL+  A+       
Sbjct: 390 YSIVFLGVNGVGKSTNLAKVCYYLKTKGNLKIMIAACDTFRAGAVEQLRTHANCLDVFLY 449

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G DAAA+A EA   A+ +  +V++IDTAGR+ +N  LM  +GK+I +      + P
Sbjct: 450 EKGYGKDAAAIAKEAIAYAKKENFNVILIDTAGRMQDNEPLMRSLGKLILI------NNP 503

Query: 231 HSVLQVLDATTGQNALRQVEMFH-AVAGTT---------GLIMTKMDGTAR--GGGLIPI 278
             +L V +A  G +A+ Q++ F+ A+   T         G+++TK D      G  L  +
Sbjct: 504 DFILFVGEALVGNDAIDQLKKFNQALTDATCNSNKRTIDGILLTKFDTVDDKVGTALSMV 563

Query: 279 VVTHKIPVYFLGVGEGINDLEPF 301
            +T K P+ F+G+G+    L+ F
Sbjct: 564 YLTGK-PIVFVGIGQKYTHLKKF 585


>gi|237844315|ref|XP_002371455.1| signal recognition particle protein, putative [Toxoplasma gondii
           ME49]
 gi|211969119|gb|EEB04315.1| signal recognition particle protein, putative [Toxoplasma gondii
           ME49]
          Length = 564

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 153/320 (47%), Gaps = 42/320 (13%)

Query: 7   ASESLSWIRKLT---KGFASTSLKLKEGITDIISSRRL---DDGVREELEDLLIRSDIGV 60
           A+ +  W R LT   + F    L     I +++ + R    +  V EE+ DLL+ S    
Sbjct: 247 AAAASGWFRSLTSKLQSFTGNKLLTNADIAEVLPAFRAHLAEKNVAEEVIDLLLHS---- 302

Query: 61  AVAQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHV 113
                +   L   R A   SV Q V   + + I K+L P      L          R   
Sbjct: 303 -----VQSRLKGTRTASFTSVHQTVRMAMRDAIVKILTPKKTVDVLRLALEAKAEGRVFS 357

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I+ +GVNGVGK+T + K++  +   G L V++AA DTFR+ A++QL+  +          
Sbjct: 358 IVFLGVNGVGKSTNLAKVAYYLKHKGNLDVLIAACDTFRAGAVEQLRTHSRCLQVPLFER 417

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAAA+A EA   A+ +  DV++IDTAGR+ +N  LM  + K++ +      ++P  
Sbjct: 418 GYGKDAAAIAREALATARQEGRDVVLIDTAGRMQDNEPLMRSLAKLVAM------NSPDM 471

Query: 233 VLQVLDATTGQNALRQVEMFH-------AVAG-----TTGLIMTKMDGT-ARGGGLIPIV 279
           +L V +A  G +A+ Q++ F+       A+ G       G+I+TK D    + G  + +V
Sbjct: 472 ILFVGEALVGNDAVDQLKKFNQALVDLTALGGRPPRTVDGIILTKFDTVDDKVGAALSMV 531

Query: 280 VTHKIPVYFLGVGEGINDLE 299
                PV F+G G+   +L+
Sbjct: 532 YITGQPVVFVGTGQKYPNLK 551


>gi|167519717|ref|XP_001744198.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777284|gb|EDQ90901.1| predicted protein [Monosiga brevicollis MX1]
          Length = 317

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 132/281 (46%), Gaps = 40/281 (14%)

Query: 53  LIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-VSELIHKMLMP------LSK 101
           LI  ++   +A+K+ E    +L+    +   S+  V+   +S+ + ++L P      L  
Sbjct: 30  LIEKNVAQNIAEKLCESVEEQLVGTEKSSFSSIATVVRQAISDALTRILTPKRQVNILRD 89

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK-- 159
                   RP+VI   GVNGVGK+T + K++  +    ++V++AA DTFRS A++QLK  
Sbjct: 90  VREAQRQQRPYVITFCGVNGVGKSTNLSKIAFWLLSNNMRVLIAACDTFRSGAVEQLKTH 149

Query: 160 -------IWADRTSADFVC---SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
                  +  D   A  V       G D A +A  A   A+ +  DV+++DTAGR+ +N 
Sbjct: 150 CTKLRNMLQQDDQQAPIVSIFDQGYGKDDAGVAALAISLAKTEGYDVVLVDTAGRMQDNE 209

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV----------AGTT 259
            LM  + K+I+       + P  VL V +A  G  A+ Q+  F+                
Sbjct: 210 PLMRSLTKLIK------HNKPDLVLFVGEALVGNEAVDQLTKFNKALQDFSESSQPRTLD 263

Query: 260 GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           G++++K D    + G  I +      P+ F+G G+   DL+
Sbjct: 264 GIVLSKFDTVDDKVGSAISMTYITGQPIVFVGTGQDYYDLK 304


>gi|148762461|dbj|BAF63932.1| signal recognition particle GTPase [Virgibacillus sp. Sa12-3XX]
          Length = 260

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 95/168 (56%), Gaps = 13/168 (7%)

Query: 111 PHVILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           P V+++VG+ G GKTT  GKL+    KK + + L   L A D +R AAI QL+   ++ +
Sbjct: 96  PTVVMMVGLQGAGKTTTTGKLANLLRKKHNRSPL---LVACDVYRPAAIKQLETLGEQLT 152

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                    ++   +A +A ++A+ +  D +IIDTAGRLH ++ LM  + ++   +K   
Sbjct: 153 MPVFSMGTEANPVDIATKAIEKAREEHHDYVIIDTAGRLHVDNELMDELQEIKANVK--- 209

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              P  +  V+D+ TGQ+A+   E F+     +G+++TK+DG  RGG 
Sbjct: 210 ---PDEIFLVVDSMTGQDAVNVAESFNEQLDLSGVVLTKLDGDTRGGA 254


>gi|221481269|gb|EEE19666.1| signal recognition particle protein, putative [Toxoplasma gondii
           GT1]
          Length = 588

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 153/320 (47%), Gaps = 42/320 (13%)

Query: 7   ASESLSWIRKLT---KGFASTSLKLKEGITDIISSRRL---DDGVREELEDLLIRSDIGV 60
           A+ +  W R LT   + F    L     I +++ + R    +  V EE+ DLL+ S    
Sbjct: 247 AAAASGWFRSLTSKLQSFTGNKLLTNADIAEVLPAFRAHLAEKNVAEEVIDLLLHS---- 302

Query: 61  AVAQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHV 113
                +   L   R A   SV Q V   + + I K+L P      L          R   
Sbjct: 303 -----VQSRLKGTRTASFTSVHQTVRMAMRDAIVKILTPKKTVDVLRLALEAKAEGRVFS 357

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I+ +GVNGVGK+T + K++  +   G L V++AA DTFR+ A++QL+  +          
Sbjct: 358 IVFLGVNGVGKSTNLAKVAYYLKHKGNLDVLIAACDTFRAGAVEQLRTHSRCLQVPLFER 417

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAAA+A EA   A+ +  DV++IDTAGR+ +N  LM  + K++ +      ++P  
Sbjct: 418 GYGKDAAAIAREALATARQEGRDVVLIDTAGRMQDNEPLMRSLAKLVAM------NSPDM 471

Query: 233 VLQVLDATTGQNALRQVEMFH-------AVAG-----TTGLIMTKMDGT-ARGGGLIPIV 279
           +L V +A  G +A+ Q++ F+       A+ G       G+I+TK D    + G  + +V
Sbjct: 472 ILFVGEALVGNDAVDQLKKFNQALVDLTALGGRPPRTVDGIILTKFDTVDDKVGAALSMV 531

Query: 280 VTHKIPVYFLGVGEGINDLE 299
                PV F+G G+   +L+
Sbjct: 532 YITGQPVVFVGTGQKYPNLK 551


>gi|299783402|gb|ADJ41400.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus fermentum
           CECT 5716]
          Length = 268

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 20/219 (9%)

Query: 45  VREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKML 96
           +RE + ++   L+ +D+   V +  V+ +  K    +V       Q+++  V++ + +M+
Sbjct: 28  LRETMREIRLALLEADVNFKVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVNDELTEMM 87

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAI 155
              + P N   +H P VI++VG+ G GKTT  GKL+K++  +   + +  A D +R AAI
Sbjct: 88  GETATPLN-KSAHIPTVIMMVGLQGAGKTTTAGKLAKRLKKEENARPLFIAADVYRPAAI 146

Query: 156 DQLKIWADRTSADFVCSEIGS--DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
            QL+  A   S D    E+G+  D   +  +  + A+ K  D +IIDTAGRL  +  LM 
Sbjct: 147 TQLQQVA--ASIDVPVFEMGTDVDPVEIVRQGMEVAKEKHNDYVIIDTAGRLQIDEQLME 204

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            + K+  + K      P  +L V+DA TGQNA+   + F
Sbjct: 205 ELAKIKELAK------PDEILLVVDAMTGQNAVNTAQGF 237


>gi|156101509|ref|XP_001616448.1| signal recognition particle receptor [Plasmodium vivax SaI-1]
 gi|148805322|gb|EDL46721.1| signal recognition particle receptor, putative [Plasmodium vivax]
          Length = 602

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 148/284 (52%), Gaps = 32/284 (11%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELL-----TKRYAKDVSVQRVLYDV-SELIHKML 96
           + V + +++ L+  ++ V +   ++E++       K+    ++V++ +  V SE I  +L
Sbjct: 316 ESVLQGVKNKLLSKNVAVGICDMLIEKMKGNLIGKKKTLFSMNVKKTVSTVLSETIQSIL 375

Query: 97  MP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDT 149
           +P      L          + + I+ +GVNGVGK+T + K+   +   G LK+M+AA DT
Sbjct: 376 IPKQSVDVLRAALEAKSIGKLYSIVFLGVNGVGKSTNLAKVCYYLKTKGNLKIMIAACDT 435

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+ A++QL+  A+           G DAAA+A EA   A+ +   V++IDTAGR+ +N 
Sbjct: 436 FRAGAVEQLRTHANCLDVFLYEKGYGKDAAAIAKEAIAYAKKENFHVILIDTAGRMQDNE 495

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTT--------- 259
            LM  +GK+I +      + P  +L V +A  G +A+ Q++ F+ A+   T         
Sbjct: 496 PLMRSLGKLILI------NNPDFILFVGEALVGNDAIDQLKKFNQALTDATCNGNKRTID 549

Query: 260 GLIMTKMDGTAR--GGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G+++TK D      G  L  + +T K P+ F+G+G+    L+ F
Sbjct: 550 GILLTKFDTVDDKVGTALSMVYLTGK-PIVFVGIGQKYTHLKKF 592


>gi|50288847|ref|XP_446853.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526162|emb|CAG59786.1| unnamed protein product [Candida glabrata]
          Length = 605

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 37/223 (16%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD-- 163
           D    P+V  VVGVNGVGK+T + KL+  +     ++++ A DTFRS A++QL++  +  
Sbjct: 376 DGKKNPYVFSVVGVNGVGKSTNLSKLAFWLLQNNFRILIVACDTFRSGAVEQLRVHVENL 435

Query: 164 -----------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDT 201
                            ++  D++        GSD    +A +A K A+ +  D++++DT
Sbjct: 436 AQLMDEKHIRGSKNSRGKSGNDYIELFEAGYGGSDLVTKIAKQAIKYAKEQDFDIVLMDT 495

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           AGR HN+  LM+        LK     A P  ++ V +A  G ++++Q   F+   G   
Sbjct: 496 AGRRHNDPTLMS-------PLKNFAEQANPDKIIMVGEALVGTDSVQQARNFNNAFGKNR 548

Query: 261 ----LIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
                I++K D      G ++ +V    IP+ F+GVG+   DL
Sbjct: 549 NLDFFIISKCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDL 591


>gi|269120474|ref|YP_003308651.1| signal recognition particle protein [Sebaldella termitidis ATCC
           33386]
 gi|268614352|gb|ACZ08720.1| signal recognition particle protein [Sebaldella termitidis ATCC
           33386]
          Length = 444

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+++ G+ G GKTT   KL K +   G K  L   D +R AA  Q+K+  ++T     
Sbjct: 100 PTVVMLTGLQGAGKTTFSAKLGKYLKKKGEKPFLIGADVYRPAAKKQIKVLGEQTGISAF 159

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +  ++   +     ++A+ +    +I DTAGRLH +  LM  + K I+     +   P
Sbjct: 160 TIDESTNVLEICKAGMEKAKEENATYVIFDTAGRLHIDEQLMNEL-KEIK-----ENFHP 213

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V+D  TGQ+A+   + F+     +G+++TK+DG  RGG  + I      P+ F+ 
Sbjct: 214 DEILLVVDGMTGQDAVNVAKTFNEDLDISGVVLTKLDGDTRGGAALSIKEVSGKPIKFIS 273

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE ++D+  F     ++ I G  D
Sbjct: 274 DGEKLDDVSAFHPDRLASRILGMGD 298


>gi|322802263|gb|EFZ22659.1| hypothetical protein SINV_03515 [Solenopsis invicta]
          Length = 275

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 6/165 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+VI+ VG+ G GKTT   KL+        K  L   DTFR+ A DQ+K  A +    F
Sbjct: 100 RPNVIMFVGLQGSGKTTTCTKLAYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPF 159

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             S    D  A+A +     + +  +++I+DT+GR      L     +M++V   +    
Sbjct: 160 YGSYTEVDPVAIAQDGVDMFKKEGYEIIIVDTSGRHKQEESLFE---EMLQVANAVQ--- 213

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           P +++ V+DAT GQ    Q + F        +I+TK+DG A+GGG
Sbjct: 214 PDNIIFVMDATIGQACEAQAKAFKERVNVGSIIITKLDGHAKGGG 258


>gi|300870909|ref|YP_003785780.1| signal recognition particle GTPase [Brachyspira pilosicoli 95/1000]
 gi|300688608|gb|ADK31279.1| signal recognition particle GTPase [Brachyspira pilosicoli 95/1000]
          Length = 451

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 141/307 (45%), Gaps = 21/307 (6%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD---GVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           LTK  ++   KL++    ++S + ++D   G++E L    + +D+ +  A K +EE   +
Sbjct: 5   LTKSISNVFSKLRD--KKVLSEKDIEDTLIGIKEAL----LSADVSLEAADKFLEEAKKR 58

Query: 74  RYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              K+         + + DV + +  M+         +   +  V L+ G+ G GKTT  
Sbjct: 59  AIGKERLENVDPANQFVADVHDTLVSMIGEGESGLKLEPVEKTTVTLLFGLQGSGKTTTS 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+K   D   +V L   D  R AA++QL + A                  +   A   
Sbjct: 119 AKLAKYYKDK-RRVFLVGLDVHRPAAMEQLAVLAKEVGVPCHIDTKEKKPYKILKRAMSI 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ ++ +++I+DTAGRL  +  +M    ++ RV+  +D       L V+D+T GQ+    
Sbjct: 178 AKKEQYNMIIVDTAGRLEIDEEMML---ELRRVVNSVDVTEK---LLVVDSTAGQSVFDV 231

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F +  G  G+I+TK D   RGG  + +       V F+G GE + D++ F AK  + 
Sbjct: 232 AKSFQSNIGINGVILTKFDSGVRGGAALSLRYATGSSVKFIGTGEHLEDIDVFDAKRVAG 291

Query: 309 VITGCLD 315
            I G  D
Sbjct: 292 QILGMGD 298


>gi|320163424|gb|EFW40323.1| GTP-binding protein-PA [Capsaspora owczarzaki ATCC 30864]
          Length = 631

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 128/267 (47%), Gaps = 42/267 (15%)

Query: 20  GFASTSLKLKEGIT--DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           GF S  L   +G++   ++++  L     E+ ++ LI  ++   +++K+ + + T    K
Sbjct: 341 GFGSGLLSFFQGLSGNKVLTAEDLA-ATLEKTKEHLINKNVAADISEKLCDSVRTNLVGK 399

Query: 78  DVS-----VQRVLYDVSELIHKMLMP----------LSKPFNWDFSHRPHVILVVGVNGV 122
            +         V   + E +  +L P          L+K    D S RP  I+  GVNGV
Sbjct: 400 TMPSFTTITSTVTKSLEEAVTSILSPNRRVDILRDVLAK--RQDPSGRPFTIVFCGVNGV 457

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA----------------DRTS 166
           GK+T + K+   +    + +++AA DTFR+ A++QL++                  D  S
Sbjct: 458 GKSTNLAKICYWLVQNDISILIAACDTFRAGAVEQLRVHTRCLNDLQRSNGKLGPNDPDS 517

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                   G DAAA+A++A    + ++ DV+++DTAGR+ +N  LM  + K+++      
Sbjct: 518 VMLYEKGYGKDAAAIAFDAVNYGRDQRRDVVLVDTAGRMQDNEPLMRSLAKLVKT----- 572

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFH 253
            + P  VL V +A  G  A+ Q++ F+
Sbjct: 573 -NEPDLVLFVGEALVGNEAVDQLKRFN 598


>gi|282881745|ref|ZP_06290408.1| signal recognition particle protein [Prevotella timonensis CRIS
           5C-B1]
 gi|281304504|gb|EFA96601.1| signal recognition particle protein [Prevotella timonensis CRIS
           5C-B1]
          Length = 444

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 137/265 (51%), Gaps = 13/265 (4%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPL 99
            V E L+D+   L+ +D+   VA+   +++  K    +V +  +    + +++H  L  L
Sbjct: 26  NVAETLKDVRRALLDADVNYKVAKNFTDKVKEKALGMNVLTAVKPGQLMVKIVHDELAEL 85

Query: 100 --SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAID 156
              +        +P +IL+ G+ G GKTT  GKL+  +     K  +L A D +R AAI+
Sbjct: 86  MGGEAVGLQLDSKPAIILMSGLQGSGKTTFTGKLANMLKTKQKKNPLLVACDVYRPAAIE 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK+  ++   +        D  A+A +A +QA+AK  DV+I+DTAGRL  +  +M  I 
Sbjct: 146 QLKVVGEQVGVEVYSELDNKDVVAIAQQAIQQAKAKGNDVVIVDTAGRLAVDEEMMNEIS 205

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           ++   +       P   L V+D+ TGQ+A+   + F+      G+++TK+DG  RGG  +
Sbjct: 206 QLKNAIH------PDETLFVVDSMTGQDAVNTAKEFNDRLDFDGVVLTKLDGDTRGGAAL 259

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPF 301
            I      P+ F+G GE ++ ++ F
Sbjct: 260 SIRTVVTKPIKFVGTGEKMDAIDVF 284


>gi|326436082|gb|EGD81652.1| hypothetical protein PTSG_02368 [Salpingoeca sp. ATCC 50818]
          Length = 668

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 29/218 (13%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD--RTSA 167
           RP  ++  GVNGVGK+T + K++  +    ++VM+AA DTFRS A++QL+      RT  
Sbjct: 445 RPFSMVFCGVNGVGKSTNLSKIAFWLLSNNMRVMIAACDTFRSGAVEQLRTHCRKLRTML 504

Query: 168 DFVCSE----------IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           D                G + A +A +A + A+++K DV++IDTAGR+ +N+ LM  + +
Sbjct: 505 DDTDDAHPRVVVYDRGYGRNDAEVAADAIRIAKSEKYDVVLIDTAGRMQDNAPLMRSLTQ 564

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----------TGLIMTKMD 267
           +IR  K      P  VL V +A  G  A+ Q+  F+                G+++TK D
Sbjct: 565 LIRTNK------PDLVLFVGEALVGNEAVDQLTKFNRALQDYSEERNPRVIDGILLTKFD 618

Query: 268 GT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               + G  I +      P+ F+G G+   DL     K
Sbjct: 619 TVDDKVGSSISMTYITGQPIVFVGTGQHYFDLRKLNVK 656


>gi|13123461|gb|AAK12834.1|AF238499_1 chloroplast SRP54 precursor [Chlamydomonas reinhardtii]
          Length = 549

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 137/277 (49%), Gaps = 25/277 (9%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV------SVQRVLYDVSELIHKMLMPLS 100
           +E+   L+ +D+ + V ++ ++++  +     V       VQ +    +ELI  ++   +
Sbjct: 97  KEVRRALLEADVSLPVVRRFIKKVEERALGTKVLEGVTPDVQFIKTVSNELID-LMGGGN 155

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           +   W  + R  +IL+ G+ GVG+    GKL+  +     + +L   D +  AA  QL  
Sbjct: 156 RGKTWSRASR-KIILMAGLQGVGRHCA-GKLALYLR---ARELLLLHDVY--AAHRQLSA 208

Query: 161 WADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
            A   + D    E G+D +   +A +  ++A+   VD +IIDTAGRL  +  +MA +  +
Sbjct: 209 GA---AIDVPVFEDGTDVSPVRIAKKGVEEARRLGVDAVIIDTAGRLQVDEGMMAELRDV 265

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
              ++      P   L V+DA TGQ A   V  F+     +G I+TKMDG +RGG  + +
Sbjct: 266 KSAVR------PSDTLLVVDAMTGQEAANLVRSFNEAVDISGAILTKMDGDSRGGAALSV 319

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                 P+ F+GVGE +  LEPF  +  ++ I G  D
Sbjct: 320 REVSGKPIKFVGVGEKMEALEPFYPERMASRILGMGD 356


>gi|270589333|ref|ZP_06221440.1| signal recognition particle protein [Haemophilus influenzae HK1212]
 gi|270318457|gb|EFA29565.1| signal recognition particle protein [Haemophilus influenzae HK1212]
          Length = 150

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 6/138 (4%)

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           KV++ + D +R AAI QL+  A     DF  S++  +   +A EA   A+ K  DVLI+D
Sbjct: 11  KVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALAGAKLKFYDVLIVD 70

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    + F+     TG
Sbjct: 71  TAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAKAFNEALPLTG 124

Query: 261 LIMTKMDGTARGGGLIPI 278
           +++TK+DG ARGG  + I
Sbjct: 125 VVLTKVDGDARGGAALSI 142


>gi|85706771|ref|ZP_01037863.1| signal recognition particle protein [Roseovarius sp. 217]
 gi|85668829|gb|EAQ23698.1| signal recognition particle protein [Roseovarius sp. 217]
          Length = 367

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           +A+ DT R AA++QL I   +   D +    G D   +A  A  QA     DV ++DTAG
Sbjct: 1   MASLDTNRPAAMEQLAILGKQIGVDTLPIVKGEDPVQIAKRAKTQAALGGYDVYMLDTAG 60

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RLH ++ L+A      +     D   P   L V+D  TGQ+A+     F    G TG+++
Sbjct: 61  RLHIDAELIA------QAAAVRDVANPRETLLVVDGLTGQDAVNVATEFDDKIGVTGVVL 114

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  I G  D
Sbjct: 115 TRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPERIAGRILGMGD 166


>gi|326504320|dbj|BAJ90992.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 632

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 134/278 (48%), Gaps = 28/278 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104
           L+D L+  ++   +A+K+ E +      K + S  R+   V   + + L+ +  P     
Sbjct: 353 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSID 412

Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                       +P+V++ VGVNGVGK+T + K++  +    L VM+AA DTFRS A++Q
Sbjct: 413 ILRDVQAAKERGKPYVVVFVGVNGVGKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQ 472

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A R            D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K
Sbjct: 473 LRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSK 532

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----------TGLIMTKMD 267
           +I + K      P  VL V +A  G +A+ Q+  F+                G+++TK D
Sbjct: 533 LINLNK------PDLVLFVGEALVGNDAVDQLNKFNQKLADLSTVPTARLIDGILLTKFD 586

Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               + G  + +V     PV F+G G+   DL+    K
Sbjct: 587 TIDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVK 624


>gi|326523427|dbj|BAJ88754.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 268

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 17/206 (8%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+V++ VGVNGVGK+T + K++  +    L VM+AA DTFRS A++QL+  A R     
Sbjct: 61  KPYVVVFVGVNGVGKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPI 120

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K+I + K      
Sbjct: 121 FEKGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINLNK------ 174

Query: 230 PHSVLQVLDATTGQNALRQVEMFH------AVAGTT----GLIMTKMDGT-ARGGGLIPI 278
           P  VL V +A  G +A+ Q+  F+      +   T     G+++TK D    + G  + +
Sbjct: 175 PDLVLFVGEALVGNDAVDQLNKFNQKLADLSTVPTARLIDGILLTKFDTIDDKVGAALSM 234

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAK 304
           V     PV F+G G+   DL+    K
Sbjct: 235 VYISGSPVMFVGCGQSYTDLKKLNVK 260


>gi|322829127|gb|EFZ32662.1| signal recognition particle receptor like protein, putative
           [Trypanosoma cruzi]
          Length = 576

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 130/274 (47%), Gaps = 29/274 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMP----- 98
           L + LI  ++ V VA+ + + + T      +     L+   E      +H++L P     
Sbjct: 296 LREKLIAKNVAVEVAEHVCKSVETSLEGMKLGTFDSLHQCIEKAMTSALHRILQPKHEVN 355

Query: 99  -LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            L    +     +P+ I++ GVNGVGK+T + K++  +      +M+AAGDTFR  A++Q
Sbjct: 356 ILRAVASAQSRKKPYSIVLCGVNGVGKSTTLAKIAYWLQQNDHSIMIAAGDTFRHGAVEQ 415

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++              G+D +A+A  A  QA  ++ DV++IDTAGR+ ++   M  + K
Sbjct: 416 LEVHGRCLGVPVFQMGYGTDPSAVAAAAIAQATRQQYDVVMIDTAGRMQDHESRMRALAK 475

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTKM 266
           +I        + P  VL V +A  G + + Q+  F+              G  G+++TK 
Sbjct: 476 LIH------DNQPDLVLFVGEALVGNSGVDQLRRFNQCLVDFSPVGTVPRGIDGIVLTKF 529

Query: 267 DGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           D    + G  + +V     P+ F+G G+   DL+
Sbjct: 530 DTIDDKVGAALSMVYELGQPIVFVGSGQTYQDLK 563


>gi|71652778|ref|XP_815039.1| signal recognition particle receptor like protein [Trypanosoma
           cruzi strain CL Brener]
 gi|70880063|gb|EAN93188.1| signal recognition particle receptor like protein, putative
           [Trypanosoma cruzi]
          Length = 574

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 130/274 (47%), Gaps = 29/274 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMP----- 98
           L + LI  ++ V VA+ + + + T      +     L+   E      +H++L P     
Sbjct: 294 LREKLIAKNVAVEVAEHVCKSVETSLEGMKLGTFDSLHQCIEKAMTSALHRILQPKHEVN 353

Query: 99  -LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            L    +     +P+ I++ GVNGVGK+T + K++  +      +M+AAGDTFR  A++Q
Sbjct: 354 ILRAVASAQSRKKPYSIVLCGVNGVGKSTTLAKIAYWLQQNDHSIMIAAGDTFRHGAVEQ 413

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++              G+D +A+A  A  QA  ++ DV++IDTAGR+ ++   M  + K
Sbjct: 414 LEVHGRCLGVPVFQMGYGTDPSAVAAAAIAQATRQQYDVVMIDTAGRMQDHESRMRALAK 473

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----------AGTTGLIMTKM 266
           +I        + P  VL V +A  G + + Q+  F+              G  G+++TK 
Sbjct: 474 LIH------DNQPDLVLFVGEALVGNSGVDQLRRFNQCLVDFSPVGTVPRGIDGIVLTKF 527

Query: 267 DGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           D    + G  + +V     P+ F+G G+   DL+
Sbjct: 528 DTIDDKVGAALSMVYELGQPIVFVGSGQTYQDLK 561


>gi|189206976|ref|XP_001939822.1| signal recognition particle 54 kDa protein [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187975915|gb|EDU42541.1| signal recognition particle 54 kDa protein [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 489

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 127/277 (45%), Gaps = 40/277 (14%)

Query: 47  EELEDLLIRSDIGVAVA----QKIVEELLTKRYAKDVS----VQRVLYDVSELIHKMLMP 98
           +E+ + L+ +D+ V +     Q I   +  K  A  V+    +Q+ ++D  EL+ KM+ P
Sbjct: 3   KEISNALVEADVNVKLVMNLRQSIKRTVDFKHLAPGVNKKRLIQKAVFD--ELV-KMVDP 59

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
            ++PF      + +VI+ VG+ G GKTT   KL++     G K  L   DTFR+ A DQL
Sbjct: 60  HAEPFKPR-KGKSNVIMFVGLQGAGKTTTCTKLARWYQARGFKACLVCADTFRAGAFDQL 118

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K  A +    +  S   +D   +A E  ++ + ++ +++I+DT+GR      L       
Sbjct: 119 KQNATKAKIPYYGSHTQTDPVVVAGEGVEKFKKERFEIIIVDTSGRHRQEKDL------- 171

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
                  D  A  S               Q   F   A    +I+TK DG A GGG I  
Sbjct: 172 ------FDEMAAES---------------QARAFKEAADFGAIIITKTDGAAAGGGAISA 210

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           V     P+ FLG GE + DLE F  + F + + G  D
Sbjct: 211 VAATHTPIVFLGNGEHMLDLERFAPQAFVSKLLGMGD 247


>gi|145494914|ref|XP_001433451.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400568|emb|CAK66054.1| unnamed protein product [Paramecium tetraurelia]
          Length = 436

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 134/281 (47%), Gaps = 19/281 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLY-----DVSELIHK 94
           D +  E+   L ++D+  ++ Q++ E +         + +++QR+L      ++++L+  
Sbjct: 29  DQILNEISIALQKTDVNESLIQELRENIRLEFKLHLLEFINLQRLLQKSIIEELTKLLQN 88

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            +M            +P+V++++G+ G GKT+   K +      G KV +    + +   
Sbjct: 89  DIMSFQPK-----KGQPNVMMLIGLKGSGKTSTCFKYAYYFQKRGWKVGIICAGSSQLQE 143

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           ID +K  A +    F  S   SD      +  +  + + +D+++IDT G+    + L   
Sbjct: 144 IDWVKQQAKKIKVLFYGSYFESDPVNATQDGVQIFKKEGIDIILIDTVGKYEKETDLCKE 203

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + +M  +++      P +++ V+D++ GQ    QV +F +      +I+TK+D  ++GGG
Sbjct: 204 MKQMEYMIQ------PDNIIFVMDSSIGQICQDQVFVFKSAFNQGSIIITKVDRHSKGGG 257

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I  VV    P+ F+  GEG  DL  F +  F + + G  D
Sbjct: 258 AISAVVATNTPIDFICNGEGHEDLLEFQSSQFISKLLGFED 298


>gi|326516596|dbj|BAJ92453.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 218

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 17/206 (8%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+V++ VGVNGVGK+T + K++  +    L VM+AA DTFRS A++QL+  A R     
Sbjct: 11  KPYVVVFVGVNGVGKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPI 70

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K+I + K      
Sbjct: 71  FEKGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINLNK------ 124

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDGT-ARGGGLIPI 278
           P  VL V +A  G +A+ Q+  F+                G+++TK D    + G  + +
Sbjct: 125 PDLVLFVGEALVGNDAVDQLNKFNQKLADLSTVPTARLIDGILLTKFDTIDDKVGAALSM 184

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAK 304
           V     PV F+G G+   DL+    K
Sbjct: 185 VYISGSPVMFVGCGQSYTDLKKLNVK 210


>gi|153810625|ref|ZP_01963293.1| hypothetical protein RUMOBE_01009 [Ruminococcus obeum ATCC 29174]
 gi|149833021|gb|EDM88103.1| hypothetical protein RUMOBE_01009 [Ruminococcus obeum ATCC 29174]
          Length = 111

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 65/110 (59%), Gaps = 3/110 (2%)

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + K+ R+L+R  P A    L VLD TTGQNAL Q + F  VA   G+I+TK+DGTA+
Sbjct: 1   MEELRKIYRILEREYPEAYLETLVVLDGTTGQNALAQAKQFAEVANVNGIILTKLDGTAK 60

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321
           GG  + I     IPV ++GVGE I+DL+ F   D  A +    D  E+ +
Sbjct: 61  GGIAVAIQSELDIPVKYIGVGETIDDLQKF---DADAFVNALFDIDEKDL 107


>gi|167945835|ref|ZP_02532909.1| signal recognition particle-docking protein FtsY [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 227

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 95/153 (62%), Gaps = 2/153 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L +  + T   L +G+ +++  R+ +DD + EELE LL+ +D+GV    +I+++L  + 
Sbjct: 28  RLKERLSRTRSNLSDGLANLLLGRKEIDDELLEELETLLLTADVGVDATSRIIDDLTGRV 87

Query: 75  YAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             K++S    L  +  + +  +L   + P       RP V+L+VG+NG GKTT IGKL++
Sbjct: 88  KRKELSDPEALSRILKQQLLAILESCATPPPPPPPGRPLVVLMVGINGAGKTTTIGKLTR 147

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           ++   G +VMLAAGDTFR+AA++QL+ W +R  
Sbjct: 148 RLKHEGQEVMLAAGDTFRAAAVEQLQSWGERNQ 180


>gi|56807691|ref|ZP_00365570.1| COG0541: Signal recognition particle GTPase [Streptococcus pyogenes
           M49 591]
          Length = 386

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 10/174 (5%)

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDT 201
           + A D +R AAIDQLK    + +      ++G+D +A  +  +  +QA+  + D ++IDT
Sbjct: 1   MIAADIYRPAAIDQLKTLGQQINVPVF--DMGTDHSAVDIVRKGLEQARENRNDYVLIDT 58

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL  +  LM    + +R +K L    P+ +L V+D+  GQ A      F+     TG+
Sbjct: 59  AGRLQIDEKLM----EELRDVKAL--AQPNEILLVVDSMIGQEAANIAYEFNHQLSITGV 112

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++TK+DG  RGG  + +      P+ F G+GE I D+E F     S+ I G  D
Sbjct: 113 VLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMSSRILGMGD 166


>gi|270489364|ref|ZP_06206438.1| signal peptide binding domain protein [Yersinia pestis KIM D27]
 gi|270337868|gb|EFA48645.1| signal peptide binding domain protein [Yersinia pestis KIM D27]
          Length = 282

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 74/131 (56%), Gaps = 6/131 (4%)

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A +QA+ K  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+
Sbjct: 4   ALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQD 57

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A    + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF   
Sbjct: 58  AANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSDALEPFHPD 117

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 118 RIASRILGMGD 128


>gi|34581773|gb|AAQ76042.1| signal recognition particle receptor protein [Cucumis sativus]
          Length = 313

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 137/278 (49%), Gaps = 28/278 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104
           L+D L+  ++   +A+K+ E +      K + S  R+   V   + + L+ +  P     
Sbjct: 34  LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEEALVRILTPRRSID 93

Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                       +P+V++ VGVNGVGK+T + K++  +    + VM+AA DTFRS A++Q
Sbjct: 94  ILRDVHAAKEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ 153

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A R            D A +A EA ++A     DV+++DTAGR+ +N  LM  + K
Sbjct: 154 LRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSK 213

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTT-------GLIMTKMD 267
           +I +      ++P  VL V +A  G +A+ Q+  F+   A   T+       G+++TK D
Sbjct: 214 LINL------NSPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPEPRLIDGILLTKFD 267

Query: 268 GT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               + G  + +V     PV F+G G+   DL+    K
Sbjct: 268 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 305


>gi|4538527|emb|CAB39375.1| signal recognition particle [Corynebacterium glutamicum]
          Length = 263

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 118/238 (49%), Gaps = 26/238 (10%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP 102
           E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E + ++L   ++ 
Sbjct: 33  EIRLALLEADVSLTVVRAFINRIKERAVGAEVSQALNPAQQVIKIVNEELVQILGGETRR 92

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            +    + P VI++ G+ G GKTT+ GKLSK +   G   ML A D  R  A+ QL+I  
Sbjct: 93  LSL-AKNPPTVIMLAGLQGAGKTTLAGKLSKHLVKQGHTPMLVACDLQRPGAVQQLQIVG 151

Query: 163 DR-----------TSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           +R           TS D +  E+G+   D   +A    ++A+  + D++I+DTAGRL  +
Sbjct: 152 ERAGVTTFAPDPGTSIDSLEHEMGTSHGDPVEVARAGIEEAKRTQHDIVIVDTAGRLGID 211

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
             LM     +   +       P  VL V+D+  GQ+A+   E F      TG+++TK+
Sbjct: 212 ETLMTQARNIREAIN------PDEVLFVIDSMIGQDAVDTAEAFRDGVDFTGVVLTKL 263


>gi|297798906|ref|XP_002867337.1| signal recognition particle receptor alpha subunit family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297313173|gb|EFH43596.1| signal recognition particle receptor alpha subunit family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 633

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 17/207 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P+V++ VGVNGVGK+T + K++  +    + VM+AA DTFRS A++QL+  A R    
Sbjct: 425 RKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIP 484

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                   D A +A EA ++A     DV+++DTAGR+ +N  LM  + K+I +      +
Sbjct: 485 IFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINL------N 538

Query: 229 APHSVLQVLDATTGQNALRQVEMFH------AVAGTT----GLIMTKMDG-TARGGGLIP 277
            P  VL V +A  G +A+ Q+  F+      + +G      G+++TK D    + G  + 
Sbjct: 539 QPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAALS 598

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAK 304
           +V     PV F+G G+   DL+    K
Sbjct: 599 MVYISGSPVMFVGCGQSYTDLKKLNVK 625


>gi|15234792|ref|NP_194789.1| signal recognition particle receptor alpha subunit family protein
           [Arabidopsis thaliana]
 gi|7269961|emb|CAB79778.1| signal recognition particle receptor-like protein [Arabidopsis
           thaliana]
 gi|18086492|gb|AAL57699.1| AT4g30600/F17I23_60 [Arabidopsis thaliana]
 gi|22137194|gb|AAM91442.1| AT4g30600/F17I23_60 [Arabidopsis thaliana]
 gi|332660385|gb|AEE85785.1| signal recognition particle receptor subunit alpha [Arabidopsis
           thaliana]
          Length = 634

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 17/207 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P+V++ VGVNGVGK+T + K++  +    + VM+AA DTFRS A++QL+  A R    
Sbjct: 426 RKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIP 485

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                   D A +A EA ++A     DV+++DTAGR+ +N  LM  + K+I +      +
Sbjct: 486 IFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINL------N 539

Query: 229 APHSVLQVLDATTGQNALRQVEMFH------AVAGTT----GLIMTKMDG-TARGGGLIP 277
            P  VL V +A  G +A+ Q+  F+      + +G      G+++TK D    + G  + 
Sbjct: 540 QPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAALS 599

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAK 304
           +V     PV F+G G+   DL+    K
Sbjct: 600 MVYISGSPVMFVGCGQSYTDLKKLNVK 626


>gi|225445848|ref|XP_002278056.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 616

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 136/278 (48%), Gaps = 28/278 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104
           L+D L+  ++   +A+K+ E +      K + S  RV   V   + + L+ +  P     
Sbjct: 337 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRVSSTVQAAMEEALVRILTPRRSID 396

Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                       +P+V++ VGVNGVGK+T + K++  +    + VM+AA DTFRS A++Q
Sbjct: 397 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQ 456

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A R            D A +A EA ++A     DV+++DTAGR+ +N  LM  + K
Sbjct: 457 LRTHARRLQIPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSK 516

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTT-------GLIMTKMD 267
           ++ +      + P  VL V +A  G +A+ Q+  F+   A   T+       G+++TK D
Sbjct: 517 LVNL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPKPQLIDGILLTKFD 570

Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               + G  + +V     PV F+G G+   DL+    K
Sbjct: 571 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 608


>gi|147768335|emb|CAN66971.1| hypothetical protein VITISV_013670 [Vitis vinifera]
 gi|297743653|emb|CBI36536.3| unnamed protein product [Vitis vinifera]
          Length = 313

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 136/278 (48%), Gaps = 28/278 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN--- 104
           L+D L+  ++   +A+K+ E +      K + S  RV   V   + + L+ +  P     
Sbjct: 34  LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRVSSTVQAAMEEALVRILTPRRSID 93

Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                       +P+V++ VGVNGVGK+T + K++  +    + VM+AA DTFRS A++Q
Sbjct: 94  ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQ 153

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A R            D A +A EA ++A     DV+++DTAGR+ +N  LM  + K
Sbjct: 154 LRTHARRLQIPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSK 213

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTT-------GLIMTKMD 267
           ++ +      + P  VL V +A  G +A+ Q+  F+   A   T+       G+++TK D
Sbjct: 214 LVNL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPKPQLIDGILLTKFD 267

Query: 268 GT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               + G  + +V     PV F+G G+   DL+    K
Sbjct: 268 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 305


>gi|224142381|ref|XP_002324537.1| predicted protein [Populus trichocarpa]
 gi|222865971|gb|EEF03102.1| predicted protein [Populus trichocarpa]
          Length = 312

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 138/278 (49%), Gaps = 28/278 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPF-NWD 106
           L+D L+  ++   +A+K+ E +      K + S  R+   V   + + L+ +  P  + D
Sbjct: 33  LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEEALVRILTPRRSID 92

Query: 107 F---------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                       +P+V++ VGVNGVGK+T + K++  +    + VM+AA DTFRS A++Q
Sbjct: 93  ILRDVHAAREQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ 152

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A R            D A +A EA ++A     DV+++DTAGR+ +N  LM  + K
Sbjct: 153 LRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSK 212

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTT-------GLIMTKMD 267
           +I +      + P  VL V +A  G +A+ Q+  F+   A   T+       G+++TK D
Sbjct: 213 LINL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFD 266

Query: 268 GT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               + G  + +V     PV F+G G+   DL+    K
Sbjct: 267 TIDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVK 304


>gi|189212014|ref|XP_001942334.1| signal recognition particle receptor subunit alpha [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187979533|gb|EDU46159.1| signal recognition particle receptor subunit alpha [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1338

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 99/182 (54%), Gaps = 16/182 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +E+ L+R ++    A ++ E +   LT + + + ++ ++L   S L   +L  +    + 
Sbjct: 357 MEEHLLRKNVAREAAVRLCESVERDLTLKTSMEKALTKILTPTSSL--DLLREIQHTNS- 413

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + RP+V+ +VGVNGVGK+T + K++  +     +V++AA DTFRS A++QL++  DR 
Sbjct: 414 -TTTRPYVLSIVGVNGVGKSTNLSKIAFFLLQNHHRVLIAAADTFRSGAVEQLRVHVDRL 472

Query: 166 S---------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
                      D      G DAA +A +A   A     ++++IDTAGR HN+  LM+ + 
Sbjct: 473 KELSQREGGHVDLFEKGYGKDAANIAADAVTFAAKNNFNIVLIDTAGRRHNDQRLMSSLE 532

Query: 217 KM 218
           K 
Sbjct: 533 KF 534


>gi|312600981|gb|ADQ90236.1| Cell division protein ftsY [Mycoplasma hyopneumoniae 168]
          Length = 116

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 62/97 (63%)

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           + NN  LM  + K+ +++ +  P+APH  L V+DATTGQN + Q   F  +   +G+I+T
Sbjct: 1   MQNNVNLMQELKKINKIISQKVPNAPHESLLVIDATTGQNGVSQAANFAKITPVSGIILT 60

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           KMDGT++GG +  I     I V  +G+GE ++DL+PF
Sbjct: 61  KMDGTSKGGIIFSIKDQLDISVKLVGLGEAMDDLQPF 97


>gi|218513601|ref|ZP_03510441.1| signal recognition particle GTP-binding protein [Rhizobium etli
           8C-3]
          Length = 250

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 6/160 (3%)

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+    + S D +    G     +A  A + A+    DV+I+DTAGR H +  LM   
Sbjct: 1   EQLRQLGAQASIDTLPVISGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMV-- 58

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +M  + KR +PH    +L V D+ TGQ+A+     F    G TGL++T+MDG  RGG  
Sbjct: 59  -EMADIKKRSNPH---EILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAA 114

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + +      P+  +GVGE +++LE F  +  +  I G  D
Sbjct: 115 LSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILGMGD 154


>gi|224091775|ref|XP_002309350.1| predicted protein [Populus trichocarpa]
 gi|222855326|gb|EEE92873.1| predicted protein [Populus trichocarpa]
          Length = 624

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 136/278 (48%), Gaps = 28/278 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFN--- 104
           L+D L+  ++   +A+K+ E +      K +S   R+   V   + + L+ +  P     
Sbjct: 345 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLSSFTRISSTVQAAMEEALVRILTPRRSID 404

Query: 105 -------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                       +P+V++ VGVNGVGK+T + K++  +    + VM+AA DTFRS A++Q
Sbjct: 405 ILRDVHAATEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ 464

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A R            D A +A EA ++A     DV+++DTAGR+ +N  LM  + K
Sbjct: 465 LRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSK 524

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTT-------GLIMTKMD 267
           +I +      + P  VL V +A  G +A+ Q+  F+   A   T+       G+++TK D
Sbjct: 525 LIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFD 578

Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               + G  + +V     PV F+G G+   DL+    K
Sbjct: 579 TIDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVK 616


>gi|240145482|ref|ZP_04744083.1| flagellar biosynthesis protein FlhF [Roseburia intestinalis L1-82]
 gi|257202456|gb|EEV00741.1| flagellar biosynthesis protein FlhF [Roseburia intestinalis L1-82]
          Length = 416

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 123/260 (47%), Gaps = 26/260 (10%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +L R+ +   V +K V ++L +  A+ V     SV  +L   S +  KM++ L +P    
Sbjct: 160 MLYRTLLENEVNEKYVNQILDE--AEKVMHSGSSVDAIL---SNVYQKMILKLGQPDTIC 214

Query: 107 FS-HRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164
            S  +P +I  VG  GVGKTT I K++ K   + G+K+     DT+R AA +QL+++A+ 
Sbjct: 215 VSGKKPRIIFFVGPTGVGKTTTIAKIASKYKLEMGMKIAFLTADTYRIAATEQLRVYANI 274

Query: 165 TSA--DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
             A    + S    +AA          +  + D++ +DTAG  H N         M ++L
Sbjct: 275 LDAPMSIIYSAEEMNAAI--------ERVSEYDLIFVDTAGFSHKND---EQCNDMKKML 323

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             LD      V  V+ ATT    L ++   +       LI TK+D T   G +  I +  
Sbjct: 324 AGLDAAYEREVYLVVSATTKYKDLLEIADRYKEIADYKLIFTKLDETEAYGNIYNIKMYS 383

Query: 283 KIPVYFLGVGEGI-NDLEPF 301
             P+ ++  G+ + +D+E F
Sbjct: 384 GAPLSYMTNGQNVPDDIEEF 403


>gi|291536023|emb|CBL09135.1| flagellar biosynthetic protein FlhF [Roseburia intestinalis M50/1]
          Length = 416

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 123/260 (47%), Gaps = 26/260 (10%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +L R+ +   V +K V ++L +  A+ V     SV  +L   S +  KM++ L +P    
Sbjct: 160 MLYRTLLENEVNEKYVNQILDE--AEKVMHSGSSVDAIL---SNVYQKMILKLGQPDTIC 214

Query: 107 FS-HRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164
            S  +P +I  VG  GVGKTT I K++ K   + G+K+     DT+R AA +QL+++A+ 
Sbjct: 215 VSGKKPRIIFFVGPTGVGKTTTIAKIASKYKLEMGMKIAFLTADTYRIAATEQLRVYANI 274

Query: 165 TSA--DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
             A    + S    +AA          +  + D++ +DTAG  H N         M ++L
Sbjct: 275 LDAPMSIIYSAEEMNAAI--------ERVSEYDLIFVDTAGFSHKND---EQCNDMKKML 323

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             LD      V  V+ ATT    L ++   +       LI TK+D T   G +  I +  
Sbjct: 324 AGLDAAYEREVYLVVSATTKYKDLLEIADRYKEIADYKLIFTKLDETEAYGNIYNIKMYS 383

Query: 283 KIPVYFLGVGEGI-NDLEPF 301
             P+ ++  G+ + +D+E F
Sbjct: 384 GAPLSYMTNGQNVPDDIEEF 403


>gi|317129188|ref|YP_004095470.1| flagellar biosynthetic protein FlhF [Bacillus cellulosilyticus DSM
           2522]
 gi|315474136|gb|ADU30739.1| flagellar biosynthetic protein FlhF [Bacillus cellulosilyticus DSM
           2522]
          Length = 371

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 136/262 (51%), Gaps = 27/262 (10%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK--DVSVQRVLYD-VSELIHKMLMPLS 100
           G  +E+ +LL   D+      +++++LL + Y++  D   +  +++   E+I+ +L  + 
Sbjct: 112 GHLKEINELLNSIDVEDVSRLQVMKQLLKRWYSENGDEKSKETIHEWTKEIINDLLSHID 171

Query: 101 -KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158
             PFN+    +   + VVG  GVGKTT + K++ K++   G KV     DT+R AAI+QL
Sbjct: 172 YSPFNY----KKRFLNVVGPTGVGKTTTLAKIAAKIAISDGRKVAFITTDTYRIAAIEQL 227

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSILMAGIG 216
           K +A   +   V  E+       + E FK A+ +  + DV+++D+AGR   N + +  +G
Sbjct: 228 KTYAKILN---VPVEV-----VYSIEDFKNAKDRLSEYDVILVDSAGRNFLNDLYVKQLG 279

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I   + ++ H       VL  T+  N +++ ++ F A+     +I TK D T   G +
Sbjct: 280 EVIDFNEEMETHL------VLSLTSKYNDMKKIIDQFQAI-NINKVIFTKADETQSHGAM 332

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + + + + I   ++  G+ + D
Sbjct: 333 LNVALNYGIGSSYITFGQNVPD 354


>gi|255577019|ref|XP_002529394.1| signal recognition particle receptor alpha subunit, putative
           [Ricinus communis]
 gi|223531142|gb|EEF32990.1| signal recognition particle receptor alpha subunit, putative
           [Ricinus communis]
          Length = 618

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 136/278 (48%), Gaps = 28/278 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP----- 102
           L+D L+  ++   +A+K+ E +      K + S  R+   V   + + L+ +  P     
Sbjct: 339 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEEALVRILTPKRSID 398

Query: 103 -----FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                       +P+V++ VGVNGVGK+T + K++  +    + VM+AA DTFRS A++Q
Sbjct: 399 ILRDVHAAKEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ 458

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A R            D A +A EA ++A     DV+++DTAGR+ +N  LM  + K
Sbjct: 459 LRTHARRLQIPIFEKGYEKDPAIVAKEAIQEAARYGSDVVLVDTAGRMQDNEPLMRALSK 518

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTT-------GLIMTKMD 267
           +I +      + P  VL V +A  G +A+ Q+  F+   A   T+       G+++TK D
Sbjct: 519 LIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFD 572

Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
               + G  + +V     PV F+G G+   DL+    K
Sbjct: 573 TIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 610


>gi|325116612|emb|CBZ52165.1| putative signal recognition particle protein [Neospora caninum
           Liverpool]
          Length = 520

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 134/276 (48%), Gaps = 36/276 (13%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMP----- 98
           V EE+ DLL+ S         +   L   R A   +V Q V     + I K+L P     
Sbjct: 247 VAEEVIDLLLHS---------VQSRLKGTRTASFTTVHQTVRMATRDAIVKILTPKKTVD 297

Query: 99  -LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAID 156
            L          R   I+ +GVNGVGK+T + K++  +   G L V++AA DTFR+ A++
Sbjct: 298 VLRLALEAKAEGRVFSIVFLGVNGVGKSTNLAKVAYYLKHKGNLDVLIAACDTFRAGAVE 357

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL+  +            G DAAA+A EA   A+ +  DV++IDTAGR+ +N  LM  + 
Sbjct: 358 QLRTHSRCLQVPLFERGYGKDAAAIAREALATARQEGRDVVLIDTAGRMQDNEPLMRSLA 417

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-------AVAG-----TTGLIMT 264
           K++ +      + P  +L V +A  G +A+ Q++ F+       A+ G       G+I+T
Sbjct: 418 KLVAI------NNPDMILFVGEALVGNDAVDQLKKFNQALVDLTALGGRPPRTVDGIILT 471

Query: 265 KMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           K D    + G  + +V     PV F+G G+   +L+
Sbjct: 472 KFDTVDDKVGAALSMVYITGQPVVFVGTGQKYPNLK 507


>gi|283781324|ref|YP_003372079.1| GTP-binding signal recognition particle SRP54 G-domain-containing
           protein [Pirellula staleyi DSM 6068]
 gi|283439777|gb|ADB18219.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Pirellula staleyi DSM 6068]
          Length = 417

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 98/207 (47%), Gaps = 17/207 (8%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAI 155
           +P+  P    +S    V+ +VG  GVGKTT I KL+ K   + G +V L   DT+R AA+
Sbjct: 207 IPIGGPIRL-YSRERRVVALVGPTGVGKTTTIAKLAAKFRLEQGARVGLITVDTYRIAAV 265

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           DQL+ +A              D  A A E F        D+++IDTAGR   +   +  +
Sbjct: 266 DQLQTYATIMQLPLEVVNQPRDMTA-ALERFA-----DFDLVLIDTAGRSPRDGARLQEL 319

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAGTTGLIMTKMDGTARGGG 274
             M      LD   P  V  VL +   + AL+   E F  V G T L++TK+D  A    
Sbjct: 320 RSM------LDIAQPDEVHLVLASVASREALQSAREAFERV-GATSLVITKLDEAASPAS 372

Query: 275 LIPIVVTHKIPVYFLGVGEGI-NDLEP 300
           L+P++    IP+ +   G+ +  D+ P
Sbjct: 373 LLPVLRDFAIPLSYTTSGQNVPEDIRP 399


>gi|308798719|ref|XP_003074139.1| SRP54_SYNY3 Signal recognition particle protein (ISS) [Ostreococcus
           tauri]
 gi|116000311|emb|CAL49991.1| SRP54_SYNY3 Signal recognition particle protein (ISS) [Ostreococcus
           tauri]
          Length = 426

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 80/145 (55%), Gaps = 10/145 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VIL+ G+ GVGKTT  GKLS  M   G  V+L A D +R AAIDQLK     T     
Sbjct: 41  PTVILMAGLQGVGKTTACGKLSLAMRKQGKTVLLVATDVYRPAAIDQLKTLG--TQIGVP 98

Query: 171 CSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
             ++G DA+   +A    ++A+ + +DV+I+DTAGRL+ +  LM+ +        +L   
Sbjct: 99  VFDMGVDASPPEVAARGVRKAKEEDIDVVIVDTAGRLNIDEKLMSELKDT-----KLATK 153

Query: 229 APHSVLQVLDATTGQNALRQVEMFH 253
           A  ++L V+DA TGQ A      F 
Sbjct: 154 ADETLL-VVDAMTGQEAANLTASFQ 177


>gi|323490159|ref|ZP_08095379.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Planococcus donghaensis MPA1U2]
 gi|323396207|gb|EGA89033.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Planococcus donghaensis MPA1U2]
          Length = 369

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 127/261 (48%), Gaps = 23/261 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L + ++   V +K++E+L+T+  ++        + V+    K++  + +      +  P 
Sbjct: 117 LTQQEVSADVQEKLIEKLMTRDESETAPATENTWQVAR--EKLISMIVENQTHSTAENPR 174

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +   +G  GVGKTT I K++   + ++  KV L   DT+R AA++QLK +    +     
Sbjct: 175 ITCFIGPTGVGKTTTIAKIAASHTLNSDKKVGLITADTYRIAAVEQLKTYGGILNIPVQV 234

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            E  +D    A E F+       D+++IDTAGR +  +       + +  LK L P   +
Sbjct: 235 IESSADLTK-AIEDFEDC-----DIILIDTAGRNYQQT-------EYVEELKNLLPADSN 281

Query: 232 SVLQVLDATTG--QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             + ++ + T   ++  R ++ F +++ T  L++TK D T   G ++ ++  + IP+ ++
Sbjct: 282 VQVHLVLSLTAKYEDMKRIIDNFQSIS-TNELLLTKKDETGSSGAILNLICHYDIPIRYI 340

Query: 290 GVGEGIND----LEPFVAKDF 306
             G+ + D    L P +  DF
Sbjct: 341 ANGQNVPDDLLALTPELVADF 361


>gi|55420633|gb|AAV52172.1| signal recognition particle receptor alpha subunit [Caenorhabditis
           remanei]
          Length = 183

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 23/175 (13%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP+VI+  GVNGVGK+T + K++  +++   +V++AAGDTFR+ A++QL+      +A  
Sbjct: 8   RPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIAAGDTFRAGAVEQLRTHTRHLNALH 67

Query: 170 VCS----EIG--SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
             S    E G   DAA LA  A K A  +  DV+++DTAGR+ +N  LM  + K+IRV  
Sbjct: 68  PQSVHLYEQGYGKDAAGLAAAAIKIAAERDFDVVLVDTAGRMQDNEPLMRELAKLIRV-- 125

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGTT-----GLIMTKMD 267
               + P  VL V +A  G  A+ Q+  F      HA  G       G+++TK D
Sbjct: 126 ----NEPDLVLFVGEALVGNEAVDQLVKFNEALANHAAPGAKPRLIDGIVLTKFD 176


>gi|51894122|ref|YP_076813.1| flagellar GTP-binding protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857811|dbj|BAD41969.1| flagellar GTP-binding protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 478

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 17/221 (7%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAA 154
           LM    P   +   R  V+ ++G  GVGKTT + KL+   + + GLKV L   DTFR AA
Sbjct: 272 LMGPGAPIQAEAGRR-RVVALIGPTGVGKTTTLAKLAAHFALERGLKVGLITADTFRIAA 330

Query: 155 IDQLKIWADRTSADFVCSEIGSDA-AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           +DQL+ +AD  +      E  +D   ALA+ A         D++++DT GR H +   MA
Sbjct: 331 VDQLRTYADILAIPLYTVERPTDVHQALAHNA-------DADLVLMDTGGRSHKDEERMA 383

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
              ++  +L    P   H V+ +   T  ++  R +E +  + G    I TK D T+  G
Sbjct: 384 ---ELQELLAEAQPDEVHLVVSL--NTNPRDVRRMLERYLPL-GVNRFIFTKADETSAPG 437

Query: 274 GLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGC 313
            ++ I     +P+ ++  G+ + +DL P  + D+S +  G 
Sbjct: 438 LMLNIRAQWDLPISYVTDGQSVPDDLRPADSVDYSKLFMGA 478


>gi|326204604|ref|ZP_08194460.1| GTP-binding signal recognition particle SRP54 G- domain
           [Clostridium papyrosolvens DSM 2782]
 gi|325985171|gb|EGD46011.1| GTP-binding signal recognition particle SRP54 G- domain
           [Clostridium papyrosolvens DSM 2782]
          Length = 343

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 28/252 (11%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV--LYDVSELIHKMLMPLSKPFNWDFSHR 110
           L+++++   +AQKI+E++  K  A++++   V  L  +S ++ K     ++P N+    +
Sbjct: 94  LLKNEVDQDIAQKIIEKVAEKSDARNINDASVAMLSVISSILGK-----AEPINFRQDGK 148

Query: 111 PHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWAD----RT 165
           P VIL VG  GVGKTT + KL+   M      V     DT+R AA+DQLK +A+      
Sbjct: 149 PTVILFVGPTGVGKTTTLAKLAASFMLTNNKNVGFITADTYRIAAVDQLKTYAEILGIPI 208

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           S  +   EI S     + +          DV++IDTAG  + +      + K+I V    
Sbjct: 209 SIAYSVEEISSQIENYSDK----------DVILIDTAGCSYRDKQKFEELQKIIEVCN-- 256

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                  V  VL AT      R +   +       LI TK+D T   G ++        P
Sbjct: 257 ----ADEVFLVLSATVSSKNCRDIIKNYGFIPNYRLIFTKLDETPVYGSILNTKCYSDKP 312

Query: 286 VYFLGVGEGIND 297
           + ++  G+ + D
Sbjct: 313 LAYITNGQNVPD 324


>gi|68171945|ref|ZP_00545258.1| GTP-binding signal recognition particle SRP54, G-domain:Signal
           peptide binding (SRP54) M-domain [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|67998635|gb|EAM85375.1| GTP-binding signal recognition particle SRP54, G-domain:Signal
           peptide binding (SRP54) M-domain [Ehrlichia chaffeensis
           str. Sapulpa]
          Length = 290

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 6/117 (5%)

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   AQ    DVLI+DTAGRLH + ++M    + +R +K  D  +P  V+ V+D+  GQ+
Sbjct: 15  AMDNAQQANCDVLILDTAGRLHVDQVMM----EELRAIK--DLTSPSEVILVVDSMIGQD 68

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           A+   + F+   G TG+I+T++DG +RGG  + + ++   P+ F+  GE ++DL+ F
Sbjct: 69  AINVAKSFNDNIGITGIILTRIDGDSRGGAALSMKMSVGSPIKFIANGEKLSDLDDF 125


>gi|158320534|ref|YP_001513041.1| GTP-binding signal recognition particle [Alkaliphilus oremlandii
           OhILAs]
 gi|158140733|gb|ABW19045.1| GTP-binding signal recognition particle SRP54 G- domain
           [Alkaliphilus oremlandii OhILAs]
          Length = 409

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 106/203 (52%), Gaps = 15/203 (7%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAA 154
           L+P S     DF  +  V+  VG  GVGKTT I K++   S + GLKV L + DT+R AA
Sbjct: 203 LVPESINNKADF--KSKVVFFVGSTGVGKTTTIAKIAANYSLEKGLKVGLISADTYRIAA 260

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           + QLKI++D  +   +  E+      + + A K+ + +  DV++IDTAGR H N+  +  
Sbjct: 261 VAQLKIYSDILN---IPLEVIYSPEEI-HGAIKRLENR--DVILIDTAGRSHKNNEHVEE 314

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+++ +   +      V  V+ ATT  + LR +   +       +I TK+D  +  G 
Sbjct: 315 LSKLLKEIHEKE------VCLVVSATTKNSDLRDILHTYNFIDDYKIIFTKLDEVSTYGS 368

Query: 275 LIPIVVTHKIPVYFLGVGEGIND 297
           ++ I + +   + ++  G+ + D
Sbjct: 369 ILNIAMKNPQSISYVTTGQSVPD 391


>gi|325972883|ref|YP_004249947.1| signal recognition particle protein [Mycoplasma suis str. Illinois]
 gi|323651485|gb|ADX97567.1| signal recognition particle protein [Mycoplasma suis str. Illinois]
          Length = 457

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 139/300 (46%), Gaps = 28/300 (9%)

Query: 32  ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT------KRYAKDVSVQRVL 85
           +  +IS + LD  + E+L++  ++SD+ + VA +   EL        K +     VQ+ L
Sbjct: 20  LAKMISEKDLD-LIFEDLKEEFVKSDVNLDVATQFFNELKVVIKEEKKIFLGKEEVQKEL 78

Query: 86  YD-VSELIHKMLMPLSKPFNWDFSHRPHV--ILVVGVNGVGKTTVIGKLS---KKMSDAG 139
           Y  + E + + L   S+P       R  V   L+VGVNGVGKTT   KLS   +K  D  
Sbjct: 79  YQRIKEKLIESLGQKSQPLKL---RRKGVNKYLLVGVNGVGKTTTAAKLSYYLQKKEDIK 135

Query: 140 LKVMLAAGDTFRSAAIDQLK--IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
             +   + D  R+AA  QL   +     ++ FV  E+ ++     +  F      K +V+
Sbjct: 136 T-IETVSLDYNRAAAFTQLHQLVTPLGINSSFV-DELTNEEQTNKFREF--LSGLKSEVV 191

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           I D+ G L N+   +  + K+  ++       P   + V+DA +GQ +L  V+ F+    
Sbjct: 192 IFDSGGILPNSPDSLVYLKKLAELIN------PTETIIVVDALSGQESLEIVKTFYNNIH 245

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
              +I+TK D  +  G  +      K+P+ FLG GE I DL PF      + I G  D+ 
Sbjct: 246 IDSIIVTKSDSLSPLGAALSSHYFLKLPIKFLGEGEHIQDLIPFYPDRIVSRIIGEGDFA 305


>gi|15643669|ref|NP_228715.1| flagellar biosynthesis regulator FlhF [Thermotoga maritima MSB8]
 gi|4981443|gb|AAD35988.1|AE001755_11 flagellar biosynthesis protein FlhF [Thermotoga maritima MSB8]
          Length = 378

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 17/187 (9%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +L VG  GVGKTT + KL+ +   D   +V +   DT+R AA +QLKI+AD         
Sbjct: 175 VLFVGTTGVGKTTSLAKLAARFKIDEKKRVAILTLDTYRIAAAEQLKIYAD-------IM 227

Query: 173 EIGSDAAALAYEA-FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +I    A    EA ++    K  D++++DTAGR H N + M+ +  +   +K      P+
Sbjct: 228 DIPMKIAYTPKEAEYEMMALKDYDIVLVDTAGRSHQNDLQMSELRALSEAVK------PN 281

Query: 232 SVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
               VL      + +++ VE F AV   T +I+TKMD T+  G  + I     +P+ F+ 
Sbjct: 282 ITFLVLSMNYKLDDMKRIVERFSAVK-PTHIILTKMDETSVYGTFVNISEITGLPIAFVT 340

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 341 NGQRVPD 347


>gi|207346488|gb|EDZ72970.1| YDR292Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 595

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 35/205 (17%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163
           P+V  +VGVNGVGK+T + KL+  +     KV++ A DTFRS A++QL++  +       
Sbjct: 397 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 456

Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
                       +T  D+V        GSD    +A +A K ++ +  D++++DTAGR H
Sbjct: 457 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRH 516

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLI 262
           N+  LM+ +          D   P  ++ V +A  G ++++Q + F+   G        I
Sbjct: 517 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFI 570

Query: 263 MTKMDGTARG-GGLIPIVVTHKIPV 286
           ++K D      G ++ +V    IP+
Sbjct: 571 ISKCDTVGEMLGTMVNMVYATGIPI 595


>gi|325067025|ref|ZP_08125698.1| signal recognition particle protein [Actinomyces oris K20]
          Length = 391

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 9/139 (6%)

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A    + A+    DV+++DTAGRL  ++ +M    + IR+    D  +PH +L VLDA
Sbjct: 2   AVARSGVEHARTNGYDVVVVDTAGRLGVDAEMMD---QAIRIR---DAVSPHEILFVLDA 55

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             GQ+A+     F    G TG++++K+DG ARGG  + +      PV F   GEG+ D E
Sbjct: 56  MVGQDAVNTSVAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGAPVLFSSTGEGLTDFE 115

Query: 300 PFVAKDFSAVITGCLDYGE 318
            F A   ++ I   LD G+
Sbjct: 116 RFHADRMASRI---LDMGD 131


>gi|124365569|gb|ABN09803.1| GTP-binding signal recognition particle SRP54, G-domain [Medicago
           truncatula]
          Length = 314

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 17/204 (8%)

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK-IWADRTSADFVCSEIGSDAAA 180
            GKTT   + +      GLK  L   DT R+ A DQLK I+A+     +    +G     
Sbjct: 83  CGKTTTCAQFANHYQKKGLKTGLVCTDTLRNGAFDQLKQIYAETNIPCY--GRVGY--CQ 138

Query: 181 LAYEAFKQAQAKKVDVLIID-TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
              E   Q Q    D++I+D + G       L+  I ++ +  K      P  V+ V+D 
Sbjct: 139 NCRERCGQMQGGNCDLIIVDVSGGHKQEEDALIEEIHQVSKATK------PDLVILVIDG 192

Query: 240 TTGQNA-----LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
             GQ+A     L+Q   F        +I++KMDG A GGG +  V   K  V F+G GE 
Sbjct: 193 NIGQHAFDHRSLKQATAFTQSVDIGAVIVSKMDGYAMGGGSLSAVAATKSSVIFIGTGEH 252

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           +++ E F  K F + + G  D+ E
Sbjct: 253 MDEFEVFEVKPFVSSLLGMDDWYE 276


>gi|326519590|dbj|BAK00168.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 341

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 11/133 (8%)

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D   +A E  ++ + +K D++IIDT+GR    + L   + ++    K      P  V+ V
Sbjct: 14  DPVKIAVEGLEKFRQEKSDLIIIDTSGRHMQEAALFEEMRQVAEATK------PDLVIFV 67

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +D + GQ A  Q + F   A    +I+TK+DG A+GGG +  V   K PV F+G GE I+
Sbjct: 68  MDGSIGQAAFDQAQAFKQSASVGAVIVTKLDGHAKGGGALSAVAATKSPVIFIGTGEHID 127

Query: 297 DL-----EPFVAK 304
           D      EPFVA+
Sbjct: 128 DFDVFNVEPFVAR 140


>gi|220929447|ref|YP_002506356.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Clostridium cellulolyticum H10]
 gi|219999775|gb|ACL76376.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Clostridium cellulolyticum H10]
          Length = 389

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 28/252 (11%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV--LYDVSELIHKMLMPLSKPFNWDFSHR 110
           L+++++   +A KI+E++  K  A++++   V  L  +S L+ K     ++P N+    +
Sbjct: 140 LLKNEVDQDIAHKIIEKVAEKSDARNINDASVVMLSVISSLLGK-----AEPINFRQDGK 194

Query: 111 PHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWAD----RT 165
           P VIL VG  GVGKTT + KL+   M      V     DT+R AA+DQLK +A+      
Sbjct: 195 PTVILFVGPTGVGKTTTLAKLAASFMLTNNKNVGFITADTYRIAAVDQLKTYAEILGIPI 254

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           S  +   EI S     + +          DV++IDTAG  + +      + K+I V +  
Sbjct: 255 SIAYSVEEISSQIEDYSDK----------DVVLIDTAGCSYRDKQKFEELQKIIEVCQ-- 302

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                  V  VL AT      R +   +       LI TK+D T   G ++        P
Sbjct: 303 ----ADEVFLVLSATVSSKNCRDIIKNYGFIQDYRLIFTKLDETPVYGSILNTKCYSNKP 358

Query: 286 VYFLGVGEGIND 297
           + ++  G+ + D
Sbjct: 359 LAYITNGQNVPD 370


>gi|160880826|ref|YP_001559794.1| GTP-binding signal recognition particle [Clostridium
           phytofermentans ISDg]
 gi|160429492|gb|ABX43055.1| GTP-binding signal recognition particle SRP54 G- domain
           [Clostridium phytofermentans ISDg]
          Length = 404

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 123/265 (46%), Gaps = 21/265 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RP 111
           LI  D+    A +++ E+      KD ++  +L        K+++ L +P   ++S  + 
Sbjct: 153 LISHDVDEKYANQVIAEI-DPMLKKDTTIDYIL---GNFYQKIILKLGQPKTIEYSGGKT 208

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
             I  +G  GVGKTT I K++     +   K+ L   DT+R AA++QLK +AD    D  
Sbjct: 209 KFIYFIGPTGVGKTTTIAKIASSYKVEKQAKIALMTSDTYRIAAVEQLKTYAD--ILDVP 266

Query: 171 CSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
              I S+         K+A  + K  D+++IDTAGR H +      I K++ ++    P 
Sbjct: 267 LRVIYSET------EMKEAMDEFKDYDLVLIDTAGRSHKSKEQRDDIDKLVHIV----PE 316

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
               V  VL ATT    L ++   ++      LI TK+D T   G +  I +    P+ +
Sbjct: 317 EDREVYLVLSATTKYKDLIRIADTYSDIVNYRLIFTKLDETIGIGNIFNIRMYTNAPLSY 376

Query: 289 LGVGEGI-NDLEPFVAKDFSAVITG 312
              G+ + +D+E   A+  +  + G
Sbjct: 377 ATFGQNVPDDIEKLDAQSIARQLLG 401


>gi|168334566|ref|ZP_02692722.1| GTP-binding signal recognition particle SRP54, G- domain
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 374

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 30/287 (10%)

Query: 38  SRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELI 92
           ++ ++D +  E     E +L +S +   + + I++++L +     V  + R LY+     
Sbjct: 109 TKNIEDTIISEEKIPFEKILKQSMLEEGIEESIIDDILDQVSENTVDGISRALYNT---- 164

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFR 151
              L  +   FN++    P V   VG  GVGKTT I KL+  K+ +   KV+L   DT+R
Sbjct: 165 ---LTSVMPKFNYNI---PRVTFFVGSTGVGKTTTIAKLTAIKVLEENKKVVLLTADTYR 218

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            AA+ QLK +A+  + +       SD            + K  D + IDTAGR H +   
Sbjct: 219 IAAVAQLKTYAEILNVEIETIFEPSDIPKYL------QKWKDADYIFIDTAGRSHKD--- 269

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTA 270
              +G++  +L  ++      V  VL+  T    ++  V ++  +     LI+TK+D T 
Sbjct: 270 FNQLGELKELLATVE---EKQVFLVLNMNTQYKDIQSIVPIYKNLVDRFALIITKLDETD 326

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDY 316
             G L+ I    K  + ++  G+ +  D+E F    +  ++ G + Y
Sbjct: 327 GIGNLLNIASCTKTEIAYITTGQNVPEDIEKFETLKYVRLLLGRIKY 373


>gi|164657404|ref|XP_001729828.1| hypothetical protein MGL_2814 [Malassezia globosa CBS 7966]
 gi|159103722|gb|EDP42614.1| hypothetical protein MGL_2814 [Malassezia globosa CBS 7966]
          Length = 540

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 85/170 (50%), Gaps = 26/170 (15%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW-- 161
           N   S  P+ I  VGVNGVGK+T + K+   +     +V++AA DTFRS A++QL+    
Sbjct: 362 NVSPSLNPYSIGFVGVNGVGKSTNLAKVCFWLLQNRYRVLIAACDTFRSGAVEQLRTHVR 421

Query: 162 ---------------ADRTSA---DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
                          A  T A   +      G DAA +A +A   A+ +  DV++IDTAG
Sbjct: 422 NLGELEVDGHRVADGAPGTGAAMLELYERGYGKDAAGIAKDALAYARNEGFDVVLIDTAG 481

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           R+ +N  LM  + K+I V      + P  VL V +A  G  A+ Q+  F+
Sbjct: 482 RMQDNEPLMRALAKLIAV------NQPDKVLFVGEALVGNEAVDQLTKFN 525


>gi|239826633|ref|YP_002949257.1| flagellar biosynthesis regulator FlhF [Geobacillus sp. WCH70]
 gi|239806926|gb|ACS23991.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Geobacillus sp. WCH70]
          Length = 372

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 119/256 (46%), Gaps = 24/256 (9%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           E+   L+R +I   +AQ+I+ +LL K Y      + ++V     E++ + L PL  PF  
Sbjct: 115 EVHYRLVRQEISAPLAQEIMADLLEKWYKSGGKAAEKQVFAWAKEIVKEKLSPL--PFG- 171

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
             S +   I VVG  GVGKTT + K++ + + + G  +     DT+R AAIDQLK +A+ 
Sbjct: 172 GISFQKKYINVVGPTGVGKTTTLAKIAARCVLEHGKNIAFITTDTYRIAAIDQLKTYANI 231

Query: 165 TSADF-VCSEIGSDAAALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            +    VC  +         + F +A+ K    DV+ IDTAGR   +   +  +  MI  
Sbjct: 232 LNVPLEVCYNL---------QDFHEAKKKLSDRDVVFIDTAGRNFRHLQYVKDLRNMI-- 280

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
               D +       V   T     ++ +    ++      I TK+D T   G +  +++ 
Sbjct: 281 ----DFNEEMETFLVFALTAKYEDMKTIYEQFSLIPIDRFIFTKLDETTHYGAMFNLMME 336

Query: 282 HKIPVYFLGVGEGIND 297
           +K+   +L  G+ + D
Sbjct: 337 YKVGAAYLTNGQNVPD 352


>gi|225181590|ref|ZP_03735031.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Dethiobacter alkaliphilus AHT 1]
 gi|225167698|gb|EEG76508.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Dethiobacter alkaliphilus AHT 1]
          Length = 361

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 126/268 (47%), Gaps = 29/268 (10%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELI--HKMLMPLSKPFNWDFSH 109
           LI +D+  A+AQ+I+ E+      +D + +  L D V ELI   K+   L      D   
Sbjct: 112 LIDNDVDPALAQQILTEI-----HEDFAAENALSDEVVELILQKKVREHLR---TADVPD 163

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
              V+  VG  GVGKTT + KL+ + +     +V +   D++R  A++QL+ +AD T   
Sbjct: 164 TSRVLTFVGPTGVGKTTTLAKLAARFALYHNKQVGMITIDSYRIGAVEQLRTYADITGMP 223

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVD--VLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                   D          QA  +  D  ++++DTAGR   NS+ ++ +   +  L    
Sbjct: 224 IEVVMTPKD--------MTQALERLADREIILVDTAGRNAKNSMQVSELAVFMEALP--- 272

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             AP + L VL ATT    L+Q+    +      LI TK+D T   G L+ +  T  +P+
Sbjct: 273 --APETFL-VLSATTKTRDLQQIIAKFSKVNFNRLIFTKLDETETFGALLNVANTSNLPI 329

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITGC 313
            +L  G+ + +D+E   A   + +I G 
Sbjct: 330 TYLTTGQNVPDDIENATADKLAKLILGV 357


>gi|23099031|ref|NP_692497.1| flagellar biosynthesis regulator FlhF [Oceanobacillus iheyensis
           HTE831]
 gi|22777259|dbj|BAC13532.1| flagella-associated protein [Oceanobacillus iheyensis HTE831]
          Length = 372

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 124/250 (49%), Gaps = 28/250 (11%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           LI  +I   +A+++++E+      +D   +++ +L +V +LI   L  +   F +D  HR
Sbjct: 121 LIAQEISPTIAEQLIKEVRDDETNQDEYHNLESILINVKQLIVNRLEQVDIGFTYD--HR 178

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
             +I  VG  GVGKTT I K++ K+  +   KV     DT+R AA+DQLK +A       
Sbjct: 179 --IIQFVGPTGVGKTTTIAKIAAKLYLEEKKKVAFITLDTYRIAAVDQLKTYA------- 229

Query: 170 VCSEIGSDAAALAY--EAFKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
              +I      +AY  E +++A  K    DV+++DTAGR + ++  +  I +    LK  
Sbjct: 230 ---KILHIPVEVAYSKEDYRKAVEKFSSFDVILVDTAGRNYRDNQYLNEIQEWPSSLKVT 286

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           +         VL  T+    +  +     + G  G++ TK+D T + G L+ I   +KI 
Sbjct: 287 N-------YLVLSMTSKPKDMLDIFQRFQLLGIHGVVFTKLDETEQYGNLLNISWNNKIR 339

Query: 286 VYFLGVGEGI 295
           + ++  G+ +
Sbjct: 340 IGYMTNGQDV 349


>gi|254478874|ref|ZP_05092238.1| SRP54-type protein, GTPase domain [Carboxydibrachium pacificum DSM
           12653]
 gi|214035187|gb|EEB75897.1| SRP54-type protein, GTPase domain [Carboxydibrachium pacificum DSM
           12653]
          Length = 341

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 128/296 (43%), Gaps = 42/296 (14%)

Query: 6   VASESLSWIRKLTKGFAST-SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    ++ ++ L K  A+  S ++ E     I+ + ++ G+ +EL  LL     G+    
Sbjct: 66  ITKSDINELKNLIKTIATNKSSEISENGVKSITLKLVEYGIEKELSQLLGE---GIDKLD 122

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            + +E+L KR                   K  +   +P +   S R   +L +G  GVGK
Sbjct: 123 DVGKEVLKKRI------------------KAFLGAPQPLD---SERSKKVLFIGPTGVGK 161

Query: 125 TTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT + K++  +  + G KVML   D FR AA+DQLK + D          +        +
Sbjct: 162 TTTVAKIASHLILNEGKKVMLVTADVFRIAAVDQLKSYGDILG-------VPVKVVGNIF 214

Query: 184 EAFK-QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATT 241
           E  K Q + +  DV++IDTAGR H +        K I  LK    +A    +   L ATT
Sbjct: 215 EFHKLQPEFEDYDVVLIDTAGRSHKDE-------KRINELKTFIKYAECDEIFLCLSATT 267

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
               L++V   +  AG   LI TK+D T     ++  V     P+ +   G+ + D
Sbjct: 268 RSQDLKEVINRYDFAGNYKLIFTKLDETDNYSSILNAVYYSGRPISYFTNGQIVPD 323


>gi|20807868|ref|NP_623039.1| flagellar GTP-binding protein [Thermoanaerobacter tengcongensis
           MB4]
 gi|20516432|gb|AAM24643.1| Flagellar GTP-binding protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 341

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 128/296 (43%), Gaps = 42/296 (14%)

Query: 6   VASESLSWIRKLTKGFAST-SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    ++ ++ L K  A+  S ++ E     I+ + ++ G+ +EL  LL     G+    
Sbjct: 66  ITKSDINELKNLIKTIATNKSSEISENGVKSITLKLVEYGIEKELSQLLGE---GIDKLD 122

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            + +E+L KR                   K  +   +P +   S R   +L +G  GVGK
Sbjct: 123 DVGKEVLKKRI------------------KAFLGAPQPLD---SERSKKVLFIGPTGVGK 161

Query: 125 TTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT + K++  +  + G KVML   D FR AA+DQLK + D          +        +
Sbjct: 162 TTTVAKIASHLILNEGKKVMLVTADVFRIAAVDQLKSYGDILG-------VPVKVVGNIF 214

Query: 184 EAFK-QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATT 241
           E  K Q + +  DV++IDTAGR H +        K I  LK    +A    +   L ATT
Sbjct: 215 EFHKLQPEFEDYDVVLIDTAGRSHKDE-------KRINELKTFVKYAECDEIFLCLSATT 267

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
               L++V   +  AG   LI TK+D T     ++  V     P+ +   G+ + D
Sbjct: 268 RSQDLKEVINRYDFAGNYKLIFTKLDETDNYSSILNAVYYSGRPISYFTNGQIVPD 323


>gi|325989376|ref|YP_004249075.1| Signal recognition particle protein [Mycoplasma suis KI3806]
 gi|323574461|emb|CBZ40111.1| Signal recognition particle protein [Mycoplasma suis]
          Length = 457

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 142/300 (47%), Gaps = 28/300 (9%)

Query: 32  ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT------KRYAKDVSVQRVL 85
           +  +IS + LD  + E+L++  ++SD+ + VA +   EL        K +     VQ+ L
Sbjct: 20  LAKMISEKDLD-LIFEDLKEEFVKSDVNLDVATQFFNELKVVIKEEKKIFLGKEEVQKEL 78

Query: 86  YD-VSELIHKMLMPLSKPFNWDFSHRPHV--ILVVGVNGVGKTTVIGKLS---KKMSDAG 139
           Y  + E + + L   S+P       R  V   L+VGVNGVGKTT   KLS   +K  D  
Sbjct: 79  YQRIKEKLIESLGQKSQPLKL---RRKGVNKYLLVGVNGVGKTTTAAKLSYYLQKKEDIK 135

Query: 140 LKVMLAAGDTFRSAAIDQLK--IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
             +   + D  R+AA  QL   +     ++ FV  E+ ++     +  F      K +V+
Sbjct: 136 T-IETVSLDYNRAAAFTQLHQLVTPLGINSSFV-DELTNEEQTNKFREF--LSGLKSEVV 191

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           I D+ G L N+   +  + K+  ++     +A  +++ V+DA +GQ +L  V+ F+    
Sbjct: 192 IFDSGGILPNSPDSLVYLKKLAELI-----NATETII-VVDALSGQESLEIVKTFYNNIH 245

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
              +I+TK D  +  G  +      K+P+ FLG GE I DL PF      + I G  D+ 
Sbjct: 246 IDSIIVTKSDSLSPLGAALSSHYFLKLPIKFLGEGEHIQDLIPFYPDRIVSRIIGEGDFA 305


>gi|306820136|ref|ZP_07453784.1| flagellar biosynthesis protein FlhF [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551914|gb|EFM39857.1| flagellar biosynthesis protein FlhF [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 433

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 24/222 (10%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVML 144
           YD  +L +++L   +     DFS R    + +G  GVGKTT + K+ SK+  +   K+  
Sbjct: 217 YD--DLKNEVLDMFADYIKVDFSKRHKYYVFIGSTGVGKTTTLAKIASKETIENKKKIGF 274

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE----AFKQAQAKKVDVLIID 200
              DT+R +A++QLK +A          EI S    +AYE    +F   +    D++ ID
Sbjct: 275 LTLDTYRISAVEQLKTYA----------EILSSPIEVAYEIQDLSFAIDRLSNRDMVFID 324

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGR HNN    + I  + +VL  ++      V  VL A T  + +  +   ++      
Sbjct: 325 TAGRSHNNK---SQIDDLKKVLTDIE---DKKVFLVLSANTSIDDIYDIIDTYSFVDEYE 378

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301
           +I+TK D T R G ++ I+      + ++  G+ + +D+E F
Sbjct: 379 IIVTKTDETGRMGNILDIIKKTGKNISYITFGQNVPDDIEKF 420


>gi|323338216|gb|EGA79449.1| Srp101p [Saccharomyces cerevisiae Vin13]
          Length = 359

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 30/171 (17%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD------- 163
           P+V  +VGVNGVGK+T + KL+  +     KV++ A DTFRS A++QL++  +       
Sbjct: 182 PYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMD 241

Query: 164 ------------RTSADFV----CSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
                       +T  D+V        GSD    +A +A K ++ +  D++++DTAGR H
Sbjct: 242 DSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRH 301

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           N+  LM+ +          D   P  ++ V +A  G ++++Q + F+   G
Sbjct: 302 NDPTLMSPLKSFA------DQAKPDKIIMVGEALVGTDSVQQAKNFNDAFG 346


>gi|326791521|ref|YP_004309342.1| GTP-binding signal recognition particle SRP54 G- domain
           [Clostridium lentocellum DSM 5427]
 gi|326542285|gb|ADZ84144.1| GTP-binding signal recognition particle SRP54 G- domain
           [Clostridium lentocellum DSM 5427]
          Length = 381

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 17/211 (8%)

Query: 89  SELIHKMLMPLSKPF-NWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAA 146
            E+I K+   L K     +      +I  +G  GVGKTT + KL+ K + +   KV+L  
Sbjct: 161 EEMIRKIYSELEKSLREKEEKDLAQIIFFIGSTGVGKTTTLAKLTAKYVLEEHKKVVLFT 220

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY-EAFKQAQAKKVDVLIIDTAGRL 205
            DT+R AA++QLK +AD    +     I ++A    Y E +K      +D ++IDTAGR 
Sbjct: 221 ADTYRIAAVEQLKTYADILGVEIEV--IYNEAELPQYIEKWKH-----MDYILIDTAGRS 273

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT-GQNALRQVEMFHAVAGTTGLIMT 264
           H N      + ++  ++K +D      V  VL+A+T  ++ +  V  +        LI+T
Sbjct: 274 HKNE---EQVKELKALMKNVD---KKQVFLVLNASTAAKDVVTIVNTYEKAESEFDLIIT 327

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           K+D T   G ++ I      P+ +L  G+ +
Sbjct: 328 KLDETDEIGNVVNIGYYANKPIMYLTNGQNV 358


>gi|160902845|ref|YP_001568426.1| GTP-binding signal recognition particle [Petrotoga mobilis SJ95]
 gi|160360489|gb|ABX32103.1| GTP-binding signal recognition particle SRP54 G- domain [Petrotoga
           mobilis SJ95]
          Length = 438

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 14/181 (7%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ++ +G  GVGKTT + K++  +     K+ L   DT+R AA DQLK +AD          
Sbjct: 247 VMFIGPTGVGKTTTLAKIAANLKKLNKKIALITIDTYRIAATDQLKTYADILGVSLHICY 306

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             SD   +A E+         DV++IDTAGR H N++ M      ++V K  D   P   
Sbjct: 307 TPSD-LKIALESLLN-----FDVILIDTAGRSHKNNLQMGE----LKVFK--DVVEPDYN 354

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + ++ + T    +  +    +      LI TKMD T+  G L   +   K+P+  LG+ +
Sbjct: 355 IMLVSSNTNCEDMMHIYDNFSYLKPNALIFTKMDETSSYGQLFSFLEYSKLPL--LGITD 412

Query: 294 G 294
           G
Sbjct: 413 G 413


>gi|291524882|emb|CBK90469.1| flagellar biosynthetic protein FlhF [Eubacterium rectale DSM 17629]
          Length = 414

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 20/221 (9%)

Query: 88  VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLA 145
           +S +  K+++   +P     +  +P V+  VG  GVGKTT I K++ K   +    +   
Sbjct: 193 LSNVYQKLILRFGQPETIKVNGKKPRVVFFVGPTGVGKTTTIAKIASKFKVNYNKNIAFI 252

Query: 146 AGDTFRSAAIDQLKIWAD----RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
             DT+R AA DQL+ +A+      S  +  +E+ S  A   YE        + DV+ +DT
Sbjct: 253 TADTYRIAATDQLRTFANILDTPLSVIYTATELNS--AVAEYE--------QADVIFVDT 302

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AG  H N         M  +L  L P    SV  VL ATT    L  +   +       L
Sbjct: 303 AGFSHKNETQR---NDMRALLAGLSPEYEKSVYLVLSATTKYRDLISIIDSYKDIDDYKL 359

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301
           I TK+D T+  G L+ I +     + ++  G+ + +D+E F
Sbjct: 360 IFTKLDETSSYGNLLNIKLYSDAGISYVTNGQNVPDDIEVF 400


>gi|238924149|ref|YP_002937665.1| GTP-binding signal recognition particle SRP54, G-domain protein
           [Eubacterium rectale ATCC 33656]
 gi|238875824|gb|ACR75531.1| GTP-binding signal recognition particle SRP54, G-domain protein
           [Eubacterium rectale ATCC 33656]
 gi|291529023|emb|CBK94609.1| flagellar biosynthetic protein FlhF [Eubacterium rectale M104/1]
          Length = 414

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 20/221 (9%)

Query: 88  VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLA 145
           +S +  K+++   +P     +  +P V+  VG  GVGKTT I K++ K   +    +   
Sbjct: 193 LSNVYQKLILRFGQPETIKVNGKKPRVVFFVGPTGVGKTTTIAKIASKFKVNYNKNIAFI 252

Query: 146 AGDTFRSAAIDQLKIWAD----RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
             DT+R AA DQL+ +A+      S  +  +E+ S  A   YE        + DV+ +DT
Sbjct: 253 TADTYRIAATDQLRTFANILDTPLSVIYTATELNS--AVAEYE--------QADVIFVDT 302

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AG  H N         M  +L  L P    SV  VL ATT    L  +   +       L
Sbjct: 303 AGFSHKNETQR---NDMRALLAGLSPEYEKSVYLVLSATTKYRDLISIIDSYKDIDDYKL 359

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301
           I TK+D T+  G L+ I +     + ++  G+ + +D+E F
Sbjct: 360 IFTKLDETSSYGNLLNIKLYSDAGISYVTNGQNVPDDIEVF 400


>gi|119570967|gb|EAW50582.1| hCG2039249 [Homo sapiens]
          Length = 168

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 6/139 (4%)

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D   +A E  ++ + +  +++I+DT+GR      L     +M++V   +    P +++ V
Sbjct: 10  DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAI---QPDNIVYV 63

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+
Sbjct: 64  MDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHID 123

Query: 297 DLEPFVAKDFSAVITGCLD 315
           D EPF  + F + + G  D
Sbjct: 124 DFEPFKTQPFISKLLGMGD 142


>gi|309804264|ref|ZP_07698341.1| SRP54-type protein, helical bundle domain protein [Lactobacillus
           iners LactinV 11V1-d]
 gi|308163667|gb|EFO65937.1| SRP54-type protein, helical bundle domain protein [Lactobacillus
           iners LactinV 11V1-d]
          Length = 209

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 14/209 (6%)

Query: 20  GFASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            F + S KL++ +  +     IS   ++   RE +   L+ +D+   V +K ++ +  + 
Sbjct: 2   AFENLSEKLQKALRKLTGKGKISENDINQASRE-IRLALLEADVNFKVVKKFIKTIKAEA 60

Query: 75  YAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ G GKTT +G
Sbjct: 61  LGKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQGTGKTTTVG 119

Query: 130 KLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+  +  +   + +L AGD +R AAIDQLK      +   V SE  +D  A+      Q
Sbjct: 120 KLANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLNVP-VYSENNTDVVAIVENGLMQ 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           A     D +IIDTAGRL  +  LM  + K
Sbjct: 179 ADRNHNDYVIIDTAGRLEIDDQLMDEVKK 207


>gi|89061728|ref|XP_944820.1| PREDICTED: signal recognition particle 54 kDa protein-like [Homo
           sapiens]
          Length = 168

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 6/139 (4%)

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D   +A E  ++ + +  +++I+DT+GR      L     +M++V   +    P +++ V
Sbjct: 9   DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVANAI---QPDNIVYV 62

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+
Sbjct: 63  MDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHID 122

Query: 297 DLEPFVAKDFSAVITGCLD 315
           D EPF  + F + + G  D
Sbjct: 123 DFEPFKTQPFISKLLGMGD 141


>gi|255030848|ref|ZP_05302799.1| hypothetical protein LmonL_20161 [Listeria monocytogenes LO28]
          Length = 259

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           AAI QL+    +   D     +G   +   +A +A  +A+ + +D +IIDTAGRLH +  
Sbjct: 2   AAIKQLETLGKQL--DMPVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDET 59

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  + ++  +        P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  
Sbjct: 60  LMDELKQVKEI------ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDT 113

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ F+  GE +  LE F     ++ I G  D
Sbjct: 114 RGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASRILGMGD 158


>gi|148269165|ref|YP_001243625.1| flagellar biosynthesis regulator FlhF [Thermotoga petrophila RKU-1]
 gi|170287827|ref|YP_001738065.1| GTP-binding signal recognition particle [Thermotoga sp. RQ2]
 gi|281411463|ref|YP_003345542.1| flagellar biosynthetic protein FlhF [Thermotoga naphthophila
           RKU-10]
 gi|147734709|gb|ABQ46049.1| GTP-binding signal recognition particle SRP54, G- domain
           [Thermotoga petrophila RKU-1]
 gi|170175330|gb|ACB08382.1| GTP-binding signal recognition particle SRP54 G- domain [Thermotoga
           sp. RQ2]
 gi|281372566|gb|ADA66128.1| flagellar biosynthetic protein FlhF [Thermotoga naphthophila
           RKU-10]
          Length = 378

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 17/187 (9%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +L VG  GVGKTT + KL+ +   D   +V +   DT+R AA +QLKI+AD         
Sbjct: 175 VLFVGTTGVGKTTSLAKLAARFKIDEKKRVAILTLDTYRIAAAEQLKIYAD-------IM 227

Query: 173 EIGSDAAALAYEA-FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +I    A    EA ++    K  D++++DTAGR H N + M+ +  +   +K      P+
Sbjct: 228 DIPMKIAYTPKEAEYEMMALKDYDIVLVDTAGRSHQNDLQMSELRALSEAVK------PN 281

Query: 232 SVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
               V+      + +++ VE F  V   T +I+TKMD T+  G  + I     +P+ F+ 
Sbjct: 282 ITFLVISMNYKLDDVKRIVERFSTVKP-THIILTKMDETSVYGTFVNISEITGLPIAFVT 340

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 341 NGQRVPD 347


>gi|317051540|ref|YP_004112656.1| flagellar biosynthetic protein FlhF [Desulfurispirillum indicum S5]
 gi|316946624|gb|ADU66100.1| flagellar biosynthetic protein FlhF [Desulfurispirillum indicum S5]
          Length = 464

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 139/278 (50%), Gaps = 23/278 (8%)

Query: 49  LEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           L DL   L+R+ +   +  K+V+ L  K  + D   + V+ +  +L+ + ++P+      
Sbjct: 203 LNDLYTKLLRAGVDRYICHKMVDALKAKLGSVD-DTELVMRNARQLVSR-IVPMGDGIEV 260

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           D  H P ++ ++G  GVGKTT I K++   +   G+ V L   DT+R AA++QLK +A+ 
Sbjct: 261 DGIH-PKIVALIGPTGVGKTTTIAKIAADHLLRQGVSVGLITLDTYRIAAVEQLKTYANI 319

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK- 223
                +  E+ +   +L   A ++   K  D++++DTAGR H ++  +  + + +R  K 
Sbjct: 320 IK---IPVEVVNQNESLLL-ALRKNLDK--DLVLVDTAGRSHRDTQQIEDLMRFLREEKI 373

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           +++ H       VL A+T +  L  +       G    I+TK+D ++  GG+   +    
Sbjct: 374 KVEVHI------VLSASTKEADLNDIMQSFEKVGIDRAIITKLDESSSFGGVFNCLAKRG 427

Query: 284 IPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320
           +PV +   G+ + NDL P     F  ++TG     EEK
Sbjct: 428 LPVSYFANGQDVPNDLIPASNHAFFELLTGT--PAEEK 463


>gi|301622214|ref|XP_002940432.1| PREDICTED: signal recognition particle receptor subunit alpha
           [Xenopus (Silurana) tropicalis]
          Length = 578

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 30/192 (15%)

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADR-------------TSADFVCSEIGSDAAALAY 183
           + G  V++AA DTFR+ A++QL+    R             T         G DAA +A 
Sbjct: 384 ENGFSVLIAACDTFRAGAVEQLRTHTQRLNSRHPPEKHKGRTMVQLYEKGYGKDAAGIAM 443

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G 
Sbjct: 444 EAISYARNQAFDVVLVDTAGRMQDNAPLMTALAKLIAV------NVPDLVLFVGEALVGN 497

Query: 244 NALRQVEMFH-AVAGTT---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVG 292
            A+ Q+  F+ A+A  +         G+++TK D    + G  I +      P+ F+G G
Sbjct: 498 EAVDQLVKFNKALADYSMADKPRLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 557

Query: 293 EGINDLEPFVAK 304
           +   DL    AK
Sbjct: 558 QTYCDLRLLNAK 569


>gi|183230399|ref|XP_001913435.1| signal recognition particle 54 kDa protein [Entamoeba histolytica
           HM-1:IMSS]
 gi|169802916|gb|EDS89786.1| signal recognition particle 54 kDa protein, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 259

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 14/213 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS----VQRVLYD--VSELIHKMLMPLS 100
           +E+E  L+  D+     +++V  +  K  ++D+      ++++ D    ELI+ ++ P +
Sbjct: 17  KEIETSLLGEDVNPIFIRQMVNNIKKKINSEDIPDGIDKRKLIKDSVFEELIN-LVDPKT 75

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           + F      +  V+++VG+ G GKTT I KL+    + G K  +   DTFR+ A +QL++
Sbjct: 76  EAFKPK-KGKTCVLMMVGLQGAGKTTTITKLALYYKNRGYKPAVVGADTFRAGAYEQLQM 134

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            A R    F   +  SD   +A E  +  + +K D++++DT+GR   +  L   +  +  
Sbjct: 135 NAKRAGVPFFGIKEESDPVKVASEGVRTFRKEKNDIILVDTSGRHKQDKELFKEMQSVRD 194

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            +K      P S++ V+D   GQ A  Q + F 
Sbjct: 195 AIK------PDSIIFVMDGAIGQAAFGQAKAFK 221


>gi|148704789|gb|EDL36736.1| signal recognition particle 54, isoform CRA_b [Mus musculus]
          Length = 286

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 6/139 (4%)

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P    +++ V
Sbjct: 10  DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAIQPD---NIVYV 63

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+
Sbjct: 64  MDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHID 123

Query: 297 DLEPFVAKDFSAVITGCLD 315
           D EPF  + F + + G  D
Sbjct: 124 DFEPFKTQPFISKLLGMGD 142


>gi|330948622|gb|EGH48882.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 72

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 48/72 (66%)

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           I DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q + F+    
Sbjct: 1   IADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQAKQFNQTVT 60

Query: 258 TTGLIMTKMDGT 269
            TGL +TK+DGT
Sbjct: 61  LTGLALTKLDGT 72


>gi|330950745|gb|EGH51005.1| signal recognition particle protein [Pseudomonas syringae Cit 7]
          Length = 209

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 13/206 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +D +++ L ++   L+ +D+ + V +  V  +  K  A
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNV--KERA 59

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGK 130
               V R L       +++   L  L    N D       P VIL+ G+ G GKTT  GK
Sbjct: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVTPPAVILMAGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L++ + +   K VM+ + D +R AAI QL+  A+     F  S+I      +A  A K+A
Sbjct: 120 LARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIKEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGI 215
           + K +DV+I+D AGRLH +  +M  I
Sbjct: 180 RLKFIDVVIVDPAGRLHVDVEMMGEI 205


>gi|237753384|ref|ZP_04583864.1| flagellar biosynthesis regulator FlhF [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375651|gb|EEO25742.1| flagellar biosynthesis regulator FlhF [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 466

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 25/217 (11%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAA 146
           E++ KM++  S+  +   S+  ++I++VG  GVGKTT + KL+ + S   +   KV +  
Sbjct: 249 EVLRKMVVARSEKLS---SNAKNIIMLVGPTGVGKTTTLAKLAARYSRLLNKNYKVGIIT 305

Query: 147 GDTFRSAAIDQLKIWADRT--SADFV--CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
            DT+R  A+DQL  +A +   S D V    E  S   +L Y           D ++IDT 
Sbjct: 306 LDTYRIGAVDQLMFYAKKMKLSIDTVVDTEEFVSALDSLKY----------CDYILIDTV 355

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           G   ++   +  +   +      DP+    V  V+ ATT    L+ +    +  G   L+
Sbjct: 356 GSSQHDRAKLESLKSFVNA----DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTLV 411

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298
            TK+D T   G +  ++   K PV +   G+ + NDL
Sbjct: 412 FTKLDETHSYGNVFSLIYETKKPVSYFSTGQEVPNDL 448


>gi|148704788|gb|EDL36735.1| signal recognition particle 54, isoform CRA_a [Mus musculus]
          Length = 325

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 6/139 (4%)

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P    +++ V
Sbjct: 49  DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAIQPD---NIVYV 102

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+
Sbjct: 103 MDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHID 162

Query: 297 DLEPFVAKDFSAVITGCLD 315
           D EPF  + F + + G  D
Sbjct: 163 DFEPFKTQPFISKLLGMGD 181


>gi|270684409|ref|ZP_06222801.1| cell division protein FtsY-like protein [Haemophilus influenzae
           HK1212]
 gi|270316251|gb|EFA28201.1| cell division protein FtsY-like protein [Haemophilus influenzae
           HK1212]
          Length = 83

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 49/70 (70%)

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I 
Sbjct: 4   LDAGTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIE 63

Query: 297 DLEPFVAKDF 306
           DL  F AK+F
Sbjct: 64  DLREFNAKEF 73


>gi|149051248|gb|EDM03421.1| signal recognition particle 54 [Rattus norvegicus]
          Length = 278

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 6/139 (4%)

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D   +A E  ++ + +  +++I+DT+GR      L     +M++V   + P    +++ V
Sbjct: 2   DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFE---EMLQVSNAIQPD---NIVYV 55

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+
Sbjct: 56  MDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHID 115

Query: 297 DLEPFVAKDFSAVITGCLD 315
           D EPF  + F + + G  D
Sbjct: 116 DFEPFKTQPFISKLLGMGD 134


>gi|238916769|ref|YP_002930286.1| flagellar biosynthesis protein FlhF [Eubacterium eligens ATCC
           27750]
 gi|238872129|gb|ACR71839.1| flagellar biosynthesis protein FlhF [Eubacterium eligens ATCC
           27750]
          Length = 432

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 114/257 (44%), Gaps = 22/257 (8%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYA---KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L+ +  IG  V  K  +E+++   A   K+ ++  +L   + +  K+++ L  P      
Sbjct: 173 LIYKKMIGNEVDTKYADEIISDIEASLKKESNIDSIL---AAVYQKIILKLGTPKTISLG 229

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD---- 163
            +P VIL +G  GVGKTT I K++     +   KV     DT+R AA+DQL  +A     
Sbjct: 230 DKPKVILFIGPTGVGKTTTIAKIASHFKLEKETKVAFITSDTYRIAAVDQLNTYASIIDC 289

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
             +  +   EIG        + FK  +     ++++DTAGR H +   M  +  +I ++ 
Sbjct: 290 PVNVAYSADEIGE-----CLDEFKDYE-----LILVDTAGRSHKSEEQMEELDNLIEMIA 339

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                    +   L  TT    L  +   +       LI TK+D T   G ++ + +   
Sbjct: 340 SRADEFDLEIYLTLSVTTKYKDLVNIADKYRHIENWALIFTKLDETCYLGNMLNMKLYTG 399

Query: 284 IPVYFLGVGEGI-NDLE 299
            P+ +   G+ + ND+E
Sbjct: 400 APLSYTTSGQNVPNDIE 416


>gi|255099433|ref|ZP_05328410.1| flagellar biosynthesis regulator FlhF [Clostridium difficile
           QCD-63q42]
          Length = 338

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 13/185 (7%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I +VG  GVGKTT I KL+ K+  +   KV +   DT+R  A++QLKI+ D  +  F   
Sbjct: 146 IALVGPPGVGKTTTIAKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPFK-G 204

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
            I  D   LA +A K       DV++IDT GR + NS+ +  I  +I      D     +
Sbjct: 205 VISPDEMELALDAMKDC-----DVVLIDTTGRGYKNSMQILEIKNLI------DKAETDN 253

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +  VL+ TT ++  + +   +       LI+TK+D T   G +  I+   + P+ ++  G
Sbjct: 254 IHLVLNCTTRESDTKAIIDSYRNVNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTG 313

Query: 293 EGIND 297
           + + D
Sbjct: 314 QNVPD 318


>gi|169839024|ref|ZP_02872212.1| Signal recognition particle, subunit FFH/SRP54 [candidate division
           TM7 single-cell isolate TM7a]
          Length = 219

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 6/140 (4%)

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +DA  +  +  + ++A+    +IIDTAGRLH +  LM  +  +       D   P+ +L 
Sbjct: 12  TDALEIVKQGIEASKAEHATYVIIDTAGRLHIDEQLMHELQDI------KDSFNPNEILL 65

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+D  TGQ+A+   + F+     TG+++TK+DG  RGG  + +      P+ F+  GE +
Sbjct: 66  VVDGMTGQDAVNVAKEFNEQLDITGVVLTKLDGDTRGGAALSVKEVAGKPIKFISEGEKL 125

Query: 296 NDLEPFVAKDFSAVITGCLD 315
           +D+ PF     ++ I G  D
Sbjct: 126 DDIAPFHPDRLASRILGMGD 145


>gi|260361313|ref|ZP_05774415.1| putative signal recognition particle protein [Vibrio
           parahaemolyticus K5030]
 gi|308115526|gb|EFO53066.1| putative signal recognition particle protein [Vibrio
           parahaemolyticus K5030]
          Length = 197

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 15/197 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +D ++E L ++   L+ +D+ + V ++ V  +  K  A
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRV--KEKA 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPL-------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             V V + L    E I  +   L       ++  N   +  P V+L+ G+ G GKTT +G
Sbjct: 60  VGVEVSKSLTPGQEFIKIVQAELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVG 118

Query: 130 KLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KLSK + +   K V++ + D +R AAI QL+  A     DF  S        +A  A   
Sbjct: 119 KLSKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPLDIANAAIDH 178

Query: 189 AQAKKVDVLIIDTAGRL 205
           A+ K  DVLI+DTAGRL
Sbjct: 179 AKKKFYDVLIVDTAGRL 195


>gi|302392374|ref|YP_003828194.1| flagellar biosynthetic protein FlhF [Acetohalobium arabaticum DSM
           5501]
 gi|302204451|gb|ADL13129.1| flagellar biosynthetic protein FlhF [Acetohalobium arabaticum DSM
           5501]
          Length = 360

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 148/309 (47%), Gaps = 39/309 (12%)

Query: 4   QKVASESLSWIRKL---------TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLI 54
           QKV SE L+ ++++              S+   L E + +++  R L  G+ +EL     
Sbjct: 68  QKVESE-LNQVKQMMGNVLQKLEENKLQSSYTNLPENLKEVVD-RLLAQGITDEL----- 120

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
            ++I +AV  K     L  +  +D  + + L+  SE I   L P+S P          V+
Sbjct: 121 ATEILIAVNDK-----LGPKEIEDKEIIKSLF--SEEIKARLNPVS-PITLS-DQESKVV 171

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
             +G  GVGKTT + KL+   S    K V L   DT+R AA++QLK +++  +   V  E
Sbjct: 172 AFIGPTGVGKTTTVAKLAADFSLTKNKDVGLVTADTYRIAAVEQLKTYSEIIN---VPLE 228

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +  ++A L  +A  +  AK  D++++DTAGR  NN + M+ +  +   L ++D    H V
Sbjct: 229 VVYNSAELE-QALDKFAAK--DLVLVDTAGRSQNNEMHMSELDAL---LAKIDVAEKHLV 282

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L  +  T  ++ L  +  F  + G    I TK+D T   G L+ I+      + ++  G+
Sbjct: 283 LSAI--TKFKDLLDIILSFQQI-GLDKFIFTKLDETKDLGMLVNIIDQFDAELSYITNGQ 339

Query: 294 GI-NDLEPF 301
            +  D+E F
Sbjct: 340 NVPEDIEVF 348


>gi|310659022|ref|YP_003936743.1| flagella-associated protein [Clostridium sticklandii DSM 519]
 gi|308825800|emb|CBH21838.1| flagella-associated protein [Clostridium sticklandii]
          Length = 408

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 133/265 (50%), Gaps = 28/265 (10%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L+   I   ++++IV E L+K    D +   +     ++I++     S+  N  F  + +
Sbjct: 166 LVEKGISSLLSEEIVNEALSK--YNDCNRDSIF----KVINERFNNFSEN-NMKFLKKYN 218

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           V   VG  GVGKTT + K++  ++ + G ++     DT+R +A++QL+ +A+  +    C
Sbjct: 219 VF--VGPTGVGKTTTLAKIASNLAIEEGKRIGFMTLDTYRISAVEQLRTYAEILN----C 272

Query: 172 S-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E+  D A ++ EA K+ +++  D + IDTAGR H N + M  + ++I  +        
Sbjct: 273 PIEVAYDKADVS-EAVKRLESR--DSIFIDTAGRSHRNKVHMIELEEIIESI------DE 323

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V  VL A   +  ++ +   ++      +++TKMD T+R G +  I+     PV ++ 
Sbjct: 324 KEVFLVLSANFNKEDIKDILEAYSFIDDFSIVITKMDETSREGLVFDIINAANKPVSYIT 383

Query: 291 VGEGI-NDLEPFVAKDFSAVITGCL 314
            G+ + +D+E F   DF+  +   L
Sbjct: 384 YGQNVPDDIEIF---DFNKFVNEFL 405


>gi|167037648|ref|YP_001665226.1| GTP-binding signal recognition particle [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040309|ref|YP_001663294.1| GTP-binding signal recognition particle [Thermoanaerobacter sp.
           X514]
 gi|256750761|ref|ZP_05491646.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914393|ref|ZP_07131709.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter sp. X561]
 gi|307724371|ref|YP_003904122.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter sp. X513]
 gi|320116063|ref|YP_004186222.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166854549|gb|ABY92958.1| GTP-binding signal recognition particle SRP54, G- domain
           [Thermoanaerobacter sp. X514]
 gi|166856482|gb|ABY94890.1| GTP-binding signal recognition particle SRP54, G- domain
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256750344|gb|EEU63363.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889328|gb|EFK84474.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter sp. X561]
 gi|307581432|gb|ADN54831.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter sp. X513]
 gi|319929154|gb|ADV79839.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 341

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           + +   IL +G  GVGKTT I K++  +  + G  VML   D FR AA+DQLK + +   
Sbjct: 145 TEKSKKILFIGPTGVGKTTTIAKIASNLILNEGKNVMLVTADIFRIAAVDQLKTYGEILG 204

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                     D   L      Q + +K DV++IDTAGR H +        K I  LK   
Sbjct: 205 VPVKVVNNIFDLHKL------QPEFEKYDVVLIDTAGRSHKDE-------KRINELKTFI 251

Query: 227 PHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            +A        L ATT    L++V   +  AG   LI TK+D T     ++  V     P
Sbjct: 252 KYANCDETYLCLSATTKSEDLKEVIKRYEFAGNYKLIFTKLDETDNYSSILNAVYYSGRP 311

Query: 286 VYFLGVGEGIND 297
           + +   G+ + D
Sbjct: 312 ISYFTNGQIVPD 323


>gi|329575671|gb|EGG57198.1| SRP54-type protein, helical bundle domain protein [Enterococcus
           faecalis TX1467]
          Length = 322

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 8/129 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R S
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAS 290

Query: 167 ADFVCSEIG 175
            + V    G
Sbjct: 291 VEVVRGNAG 299


>gi|296133028|ref|YP_003640275.1| flagellar biosynthetic protein FlhF [Thermincola sp. JR]
 gi|296031606|gb|ADG82374.1| flagellar biosynthetic protein FlhF [Thermincola potens JR]
          Length = 389

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 122/259 (47%), Gaps = 26/259 (10%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +    +LI +++  A+A KI++ LL K Y  +  V+      S L   ML  L +P    
Sbjct: 131 QRFHQILIDNEVEEALAAKILKGLL-KTYPAEEPVEGHKLKKS-LEQSMLKILRRPKPIT 188

Query: 107 FSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWA 162
           F  +     V+ ++G  GVGKTT I KL+   S    K V L   DT+R AA++QLK + 
Sbjct: 189 FKKQGLHQQVVALIGPTGVGKTTTIAKLAATFSIVDKKKVALITADTYRVAAVEQLKTYG 248

Query: 163 DRTSADFVCSEIGSDAAALAY--EAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
                     EI      + Y  E  + +  Q    D+++IDTAGR H N      + +M
Sbjct: 249 ----------EIIGIPVNVVYTPEELRDSIGQHTDKDLILIDTAGRSHKN------VAQM 292

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
             +   LD      +L VL ATT    + ++   ++    T L+ TK+D T+  G ++ I
Sbjct: 293 AELKAYLDAADVTEILLVLSATTKYKDMLEIINSYSDIPLTKLVFTKLDETSTYGAILNI 352

Query: 279 VVTHKIPVYFLGVGEGIND 297
           +   +  + ++ VG+ + D
Sbjct: 353 INKTQKHLSYVTVGQNVPD 371


>gi|289755028|ref|ZP_06514406.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           EAS054]
 gi|289695615|gb|EFD63044.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           EAS054]
          Length = 394

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 13/175 (7%)

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGS-------DAAALAYEAFKQAQAKKVDVLIID 200
           D  R AA++QL++  +R          G+       D  A+A     +A+AK  DV+I+D
Sbjct: 13  DLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVD 72

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL  +  LMA     IR     D   P  VL VLDA  GQ+A+     F    G TG
Sbjct: 73  TAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTG 126

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + +TK+DG ARGG  + +     +P+ F   GE + D + F     ++ I G  D
Sbjct: 127 VALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGD 181


>gi|126697836|ref|YP_001086733.1| flagellar biosynthesis regulator FlhF [Clostridium difficile 630]
 gi|115249273|emb|CAJ67086.1| Flagellar biosynthesis regulator FlhF (Flagella-associated
           GTP-binding protein) [Clostridium difficile]
          Length = 338

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 13/185 (7%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I +VG  GVGKTT I KL+ K+  +   KV +   DT+R  A++QLKI+ D  +  F   
Sbjct: 146 IALVGPPGVGKTTTIAKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPF-KG 204

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
            I  D   LA +  K       DV++IDT GR + NS+ +  I  +I      D     +
Sbjct: 205 VISPDEMELALDEMKDC-----DVVLIDTTGRGYKNSMQILEIKNLI------DKAETDN 253

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +  VL+ TT ++  + +   +       LI+TK+D T   G +  I+   + P+ ++  G
Sbjct: 254 IHLVLNCTTRESDTKAIIDSYRNVNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTG 313

Query: 293 EGIND 297
           + + D
Sbjct: 314 QNVPD 318


>gi|76154974|gb|AAX26359.2| SJCHGC03967 protein [Schistosoma japonicum]
          Length = 235

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 10/155 (6%)

Query: 90  ELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           EL+H ++ P  K   W  +   P+VI++VG+ G GKTT   KL+      G K  +   D
Sbjct: 82  ELVH-LVDPQVKA--WQPARGSPNVIMLVGLQGCGKTTTATKLAYFYQRKGWKTCMICAD 138

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+ A DQLK  A +    F  S   +D   +A +  ++    K +++I+DT+GR    
Sbjct: 139 TFRAGAFDQLKQNATKARIPFYGSYTETDPVVIARDGVQKFVEDKFEIIIVDTSGRHRQE 198

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
             L     +M++V   ++   P  V+ VLDA+ GQ
Sbjct: 199 DSLFE---EMLQVSNAIE---PDHVIYVLDASIGQ 227


>gi|311030110|ref|ZP_07708200.1| flagellar biosynthesis regulator FlhF [Bacillus sp. m3-13]
          Length = 381

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 37/314 (11%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVRE---ELEDLLIRSDI 58
           S QK++S + S I +  K F S  L++K+ +  +   ++ D  + +    LE+ L++S+I
Sbjct: 78  SKQKISSPAASRIEQ-DKLFDSI-LEMKKMMKSLTQEKQRDPLLPDFFFHLEEKLLQSEI 135

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVV 117
                ++++E +  K         + L  + E   ++L  L +  F+ D S++   I +V
Sbjct: 136 SSLHVEELMETIYEKWLENKTMTDKSLLKLLE--TEVLQSLGEVSFDQD-SYKKKFICLV 192

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLK----VMLAAGDTFRSAAIDQLKIWADRTSADF-VCS 172
           G  GVGKTT + KL+   +DA LK    +     DT+R AAI+QLK +A    A   VC 
Sbjct: 193 GPTGVGKTTTLAKLA---ADASLKKGKSIGFITTDTYRIAAIEQLKTYASILDAPIEVC- 248

Query: 173 EIGSDAAALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR-LDPHA 229
                    + E F  A+ K   +DV+ IDTAGR   N        + +  LK  LD   
Sbjct: 249 --------YSAEDFSAAKNKLSHLDVVFIDTAGRNFLNE-------RFVEELKEVLDFKE 293

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             +   VL  T+  + ++++       G    I TK D T   G +  I  T++    F+
Sbjct: 294 EMTTFLVLSLTSKMSDMKKITDQFWNVGIHQFIFTKKDETTSIGSMYEISRTYQKSAAFV 353

Query: 290 GVGEGI-NDLEPFV 302
             G+ +  DL PF 
Sbjct: 354 TDGQNVPEDLIPFT 367


>gi|255305291|ref|ZP_05349463.1| flagellar biosynthesis regulator FlhF [Clostridium difficile ATCC
           43255]
          Length = 338

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 13/185 (7%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I +VG  GVGKTT I KL+ K+  +   KV +   DT+R  A++QLKI+ D  +  F   
Sbjct: 146 IALVGPPGVGKTTTIAKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPFK-G 204

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
            I  D   LA +  K       DV++IDT GR + NS+ +  I  +I      D     +
Sbjct: 205 VISPDEMELALDEMKDC-----DVVLIDTTGRGYKNSMQILEIKNLI------DKAETDN 253

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +  VL+ TT ++  + +   +       LI+TK+D T   G +  I+   + P+ ++  G
Sbjct: 254 IHLVLNCTTRESDTKAIIDSYRNVNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTG 313

Query: 293 EGIND 297
           + + D
Sbjct: 314 QNVPD 318


>gi|218133684|ref|ZP_03462488.1| hypothetical protein BACPEC_01553 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991059|gb|EEC57065.1| hypothetical protein BACPEC_01553 [Bacteroides pectinophilus ATCC
           43243]
          Length = 413

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 114/251 (45%), Gaps = 16/251 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           LI +++    A  I+ E+ +    K+ S+  +L  V +   K+++ L +P       +P 
Sbjct: 161 LIDNEVNEKYANAIINEV-SGSIKKEASIDSLLGCVYQ---KIILKLGEPVYMTKGDKPK 216

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD--RTSADF 169
           VI+ +G  GVGKTT I KL+     +   KV     DT+R AA++QL  +A       + 
Sbjct: 217 VIMFIGPTGVGKTTTIAKLASYYKLEKQYKVAFITADTYRIAAVEQLNTYASIIECPVNV 276

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V S    D  A + E FK       D++ +DTAGR H +   M  + ++  ++  L    
Sbjct: 277 VYS---VDEIAQSLEDFKD-----FDLIFVDTAGRSHKDKEQMLELHELRDMVAGLSDTF 328

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                  L ATT    +  +   +A      LI TK+D T   G ++ I +     + + 
Sbjct: 329 DLECYLTLSATTKYKDMLDITGMYADIPDYRLIFTKLDETCAYGNILNIRMATGAQLSYT 388

Query: 290 GVGEGI-NDLE 299
             G+ + ND+E
Sbjct: 389 TTGQNVPNDIE 399


>gi|149176709|ref|ZP_01855320.1| GTP-binding signal recognition particle SRP54, G-domain
           [Planctomyces maris DSM 8797]
 gi|148844350|gb|EDL58702.1| GTP-binding signal recognition particle SRP54, G-domain
           [Planctomyces maris DSM 8797]
          Length = 446

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 108/209 (51%), Gaps = 21/209 (10%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           HR  V+ +VG  GVGKTT I KL+   ++ D  +K+ L   DT+R AA++QL+ +A+   
Sbjct: 249 HR-KVVALVGPTGVGKTTTIAKLAANFRLRD-NIKMGLVTVDTYRIAAVEQLRTYAE--I 304

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            D     + +       +  +QA  + V  D+++IDTAGR  ++ + +  + ++ R +  
Sbjct: 305 IDLPMKVVSTP------KEMQQALDEMVGLDLVLIDTAGRSPSDDLKIQELERLFREVP- 357

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           +D      V  V+  T+    L  +     VA  T +I+TK+D     G L+ +    K+
Sbjct: 358 ID-----EVSLVMSMTSSVKTLEAIAQRFQVARPTSMILTKLDEAPVMGSLLTLSQNVKL 412

Query: 285 PVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           PV +L  G+ + +D+EP  A   + +I G
Sbjct: 413 PVRYLTTGQDVPDDIEPANAARMARLILG 441


>gi|229827379|ref|ZP_04453448.1| hypothetical protein GCWU000182_02767 [Abiotrophia defectiva ATCC
           49176]
 gi|229788317|gb|EEP24431.1| hypothetical protein GCWU000182_02767 [Abiotrophia defectiva ATCC
           49176]
          Length = 419

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 26/255 (10%)

Query: 52  LLIRSDIGVAVAQKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L+ R  I   V +K V E+ ++      KD  + R+L     +  K+++ L +P   D +
Sbjct: 166 LIHRQLINNEVDEKYVNEITSEIESTIKKDAQLDRIL---GAVYQKLVLKLGQPSLVDIT 222

Query: 109 H-RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD--- 163
             +   +  +G  GVGKTT I K++          V L   DT+R AA++QL+ +A+   
Sbjct: 223 PGKTKYVFFLGPTGVGKTTTIAKIASSFKLKEKRSVGLLTADTYRIAAVEQLRTYANILG 282

Query: 164 -RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
              S  +  SEI         EA K+    + +V+++DTAGR   N   +A + +++  +
Sbjct: 283 IPLSVVYSASEIE--------EARKELD--RYEVVLVDTAGRSDKNKEQIAELKRLLNAI 332

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
               P     V  VL ATT  N L ++   +       LI TK+D T   G +  I++  
Sbjct: 333 ----PEEDREVYLVLSATTKYNDLTRITDVYKNVARYKLIFTKVDETGTIGNIYNILMYT 388

Query: 283 KIPVYFLGVGEGIND 297
              + ++  G+ + D
Sbjct: 389 GADLSYMTFGQNVPD 403


>gi|295399829|ref|ZP_06809810.1| flagellar biosynthetic protein FlhF [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111659|ref|YP_003989975.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y4.1MC1]
 gi|294978232|gb|EFG53829.1| flagellar biosynthetic protein FlhF [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216760|gb|ADP75364.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y4.1MC1]
          Length = 376

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 127/276 (46%), Gaps = 24/276 (8%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK--DVSVQRVL 85
           LK+  T++ +      G   E+  LL   ++   + Q+I+ +LL + Y    + + ++V 
Sbjct: 99  LKQLSTNVRAGFSHYPGPLNEVHHLLANQEVSAPLVQEIMADLLDRWYTSGGNATEKQVF 158

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VML 144
               E+I + L PL  PF    S +   I VVG  GVGKTT + K++        K +  
Sbjct: 159 AWAKEIIKEKLSPL--PFG-GISFQKKYINVVGPTGVGKTTTLAKIAAHCVLHHRKNIAF 215

Query: 145 AAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQAK--KVDVLIIDT 201
              DT+R AAIDQLK +A   +    VC  +         + F +A+ K    DV++IDT
Sbjct: 216 ITTDTYRIAAIDQLKTYAKILNVPLEVCYNL---------QDFHEAKKKLSDRDVVLIDT 266

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGR   +   +  +  +I   + ++         V   T   + ++ +    ++      
Sbjct: 267 AGRNFRHPQYVKDLQSIIDFDEEME------TFLVFALTAKYDDMKAIYEQFSLIPIDRF 320

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           I TK+D T R G ++ +++ +K+   +L  G+ + D
Sbjct: 321 IFTKLDETTRYGAMLNLMMEYKVGASYLTNGQNVPD 356


>gi|15606450|ref|NP_213830.1| flagellar biosynthesis FlhF [Aquifex aeolicus VF5]
 gi|3913659|sp|O67266|FLHF_AQUAE RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|2983662|gb|AAC07228.1| flagellar biosynthesis FlhF [Aquifex aeolicus VF5]
          Length = 373

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 116/255 (45%), Gaps = 24/255 (9%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSK 101
           V+  LE L+I+ +I   +A+KI+++      A    +   +YD  +  +  L   +  + 
Sbjct: 109 VKRYLEKLVIK-NISKNIAEKIIQD------ACGYDIDNKIYDFKDEPYTSLRESIEKNI 161

Query: 102 PFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
             N +F  + P V+ +VG  GVGKTT + KL+        KV + + D FR  A +QLK 
Sbjct: 162 KLNEEFIQNPPKVVALVGPTGVGKTTTLAKLAHLFKKNKKKVGIISLDCFRVGAFEQLKA 221

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           +A+     F   ++     A   +  +       DV+++DTAGR H + I +  +    +
Sbjct: 222 FAEVLEVPF---KLADSPRAFNIQLLEMDDR---DVILVDTAGRSHYDVIRLKELETYFK 275

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V       +  SV   L A   +  + +  M   +   +GLI TK+D T   G ++ +  
Sbjct: 276 V-------SDISVYLTLAANLSELVMYEAIMQFGMFSISGLIFTKLDETPYPGSMVNVAY 328

Query: 281 THKIPVYFLGVGEGI 295
             + PV    +G+ I
Sbjct: 329 RTQYPVVCFTMGQSI 343


>gi|291335672|gb|ADD95278.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C93]
          Length = 164

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 3/144 (2%)

Query: 30  EGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELL-TKRYAKDVSVQRVLYD 87
           +G  D +S + RLD+    ++E+    SD GV   ++I+E +    R  K++  + V   
Sbjct: 13  QGAFDTLSGKSRLDESSLLDIEEAFYASDFGVETTEEILESIREAHRENKELRAEGVGEI 72

Query: 88  VSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
              ++ K L            + +P V+ ++GVNG GKTT   KL  ++  +G  ++L A
Sbjct: 73  ARSVLRKTLEGAEGVSMLGQSTEKPEVLCLIGVNGSGKTTTCAKLGYQLKSSGCSLILGA 132

Query: 147 GDTFRSAAIDQLKIWADRTSADFV 170
            DTFR+AA +QLK W++R   + V
Sbjct: 133 CDTFRAAATEQLKEWSNRLDLEIV 156


>gi|219670143|ref|YP_002460578.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540403|gb|ACL22142.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 412

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 109/214 (50%), Gaps = 19/214 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD--RT 165
            +P ++ +VG  GVGKTT IGKL+   S     +V L   DT+R AA++QLK + +    
Sbjct: 214 RKPRIVALVGPTGVGKTTTIGKLAAGFSIVDKRRVALITADTYRVAAVEQLKTFGEIIGV 273

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             D V +  G        EA ++ + K  +++ IDTAGR  ++ + M+   ++   L++ 
Sbjct: 274 PVDVVMTPSG------LREAIQRHEDK--ELIFIDTAGRSPHHDLHMS---ELKAFLEKA 322

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P    ++L +  AT   +  R  E F  +  TT LI TK+D T  GG ++ ++    +P
Sbjct: 323 QPEL--TMLVMSAATQAADLARIYERFEPL--TTHLIFTKLDETMGGGTILNLLERTDLP 378

Query: 286 VYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGE 318
           V ++  G+ + +D+E    +  +  I G  D  E
Sbjct: 379 VAYITNGQNVPDDIEVATPERLTRYILGEGDRRE 412


>gi|297617159|ref|YP_003702318.1| flagellar biosynthetic protein FlhF [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144996|gb|ADI01753.1| flagellar biosynthetic protein FlhF [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 386

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 25/295 (8%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A E L  +R++ +  A  + KL+E    +    R    + + L +  +   +   +AQ +
Sbjct: 93  ADELLEELREMKQMMADLNHKLEEK-DKLKGMPRSVQSLYKALVNNQVNEKLAFRIAQSV 151

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKT 125
            + + T+    D  +  V    +E++  M     KP   +F+  RP V+ ++G  GVGKT
Sbjct: 152 KQRIETEEGHHDEDMMGV---CTEVLGSMF---KKPKPIEFNRGRPRVVAMIGPTGVGKT 205

Query: 126 TVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWAD--RTSADFVCSEIGSDAAALA 182
           T I KL+   +    K V L   DT+R AA++QLK +A+      + V    G + A   
Sbjct: 206 TTIAKLAANFALLERKRVGLVTIDTYRIAAVEQLKTYAEIIGVPLEVVFHPEGLETAL-- 263

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                 A+ K  DV+ IDTAGR   N   +  + + +RV +      P  +L VL   T 
Sbjct: 264 ------AKHKDKDVIFIDTAGRSPRNEPHINELAEFLRVAE------PDEILLVLSTNTP 311

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
              L ++     V     L+ TK+D   R G ++ +    K  + ++  G+ + D
Sbjct: 312 TLDLLEIYQRFNVVRIDKLVFTKVDECERFGQILNVAYKTKTGLAYITNGQNVPD 366


>gi|255523686|ref|ZP_05390652.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Clostridium carboxidivorans P7]
 gi|296186690|ref|ZP_06855092.1| flagellar biosynthesis protein FlhF [Clostridium carboxidivorans
           P7]
 gi|255512555|gb|EET88829.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Clostridium carboxidivorans P7]
 gi|296048727|gb|EFG88159.1| flagellar biosynthesis protein FlhF [Clostridium carboxidivorans
           P7]
          Length = 397

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 21/217 (9%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQ 157
           L+KP   +      ++++VG  GVGKTT I KL+ KM+   G KV L   DT+R  A++Q
Sbjct: 195 LTKPMEEN-----DIVVLVGPTGVGKTTTIAKLAGKMALLEGKKVGLITIDTYRIGAVEQ 249

Query: 158 LKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           LK +AD  +  F V   I    AA+             DV+++DT GR   N++ ++ + 
Sbjct: 250 LKTYADIMNIPFKVVLTIKEMEAAV-------ESMSNCDVILVDTTGRSSKNTMQISELR 302

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
             I  +         +V  V+  TT    +  +   +     + +I+TK+D T+  G ++
Sbjct: 303 AFIEKVN------TDNVNLVMSCTTKNRDIGVILEGYKPLNYSNIIITKLDETSTYGSIL 356

Query: 277 PIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
            I    K P+ F+  G+ + +D++   +K+ + ++ G
Sbjct: 357 NICEGSKKPISFVTTGQNVPDDIKFMTSKEITNLVLG 393


>gi|145631517|ref|ZP_01787285.1| Signal recognition particle protein [Haemophilus influenzae R3021]
 gi|144982862|gb|EDJ90379.1| Signal recognition particle protein [Haemophilus influenzae R3021]
          Length = 274

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 6/117 (5%)

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    + F+     
Sbjct: 1   MDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAKAFNEALPL 54

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I G  D
Sbjct: 55  TGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGD 111


>gi|254973930|ref|ZP_05270402.1| flagellar biosynthesis regulator FlhF [Clostridium difficile
           QCD-66c26]
 gi|255091316|ref|ZP_05320794.1| flagellar biosynthesis regulator FlhF [Clostridium difficile CIP
           107932]
 gi|255312974|ref|ZP_05354557.1| flagellar biosynthesis regulator FlhF [Clostridium difficile
           QCD-76w55]
 gi|255515733|ref|ZP_05383409.1| flagellar biosynthesis regulator FlhF [Clostridium difficile
           QCD-97b34]
 gi|255648827|ref|ZP_05395729.1| flagellar biosynthesis regulator FlhF [Clostridium difficile
           QCD-37x79]
 gi|306518941|ref|ZP_07405288.1| flagellar biosynthesis regulator FlhF [Clostridium difficile
           QCD-32g58]
          Length = 338

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 13/185 (7%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I +VG  GVGKTT I KL+ K+  +   KV +   DT+R  A++QLKI+ D  +  F   
Sbjct: 146 IALVGPPGVGKTTTIAKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPF-KG 204

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
            I  D   LA +  K       DV++IDT GR + NS+ +  I  +I      D     +
Sbjct: 205 VISPDEMELALDEMKDC-----DVVLIDTTGRGYKNSMQILEIKNLI------DKAETDN 253

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +  V++ TT ++  + +   +       LI+TK+D T   G +  I+   + P+ ++  G
Sbjct: 254 IHLVVNCTTRESDTKAIIDSYRNVNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTG 313

Query: 293 EGIND 297
           + + D
Sbjct: 314 QNVPD 318


>gi|260682045|ref|YP_003213330.1| flagellar biosynthesis regulator FlhF [Clostridium difficile CD196]
 gi|260685643|ref|YP_003216776.1| flagellar biosynthesis regulator FlhF [Clostridium difficile
           R20291]
 gi|260208208|emb|CBA60561.1| signal recognition particle complex, GTP-binding subunit
           [Clostridium difficile CD196]
 gi|260211659|emb|CBE01924.1| signal recognition particle complex, GTP-binding subunit
           [Clostridium difficile R20291]
          Length = 337

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 13/185 (7%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I +VG  GVGKTT I KL+ K+  +   KV +   DT+R  A++QLKI+ D  +  F   
Sbjct: 145 IALVGPPGVGKTTTIAKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPF-KG 203

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
            I  D   LA +  K       DV++IDT GR + NS+ +  I  +I      D     +
Sbjct: 204 VISPDEMELALDEMKDC-----DVVLIDTTGRGYKNSMQILEIKNLI------DKAETDN 252

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +  V++ TT ++  + +   +       LI+TK+D T   G +  I+   + P+ ++  G
Sbjct: 253 IHLVVNCTTRESDTKAIIDSYRNVNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTG 312

Query: 293 EGIND 297
           + + D
Sbjct: 313 QNVPD 317


>gi|89895719|ref|YP_519206.1| hypothetical protein DSY2973 [Desulfitobacterium hafniense Y51]
 gi|89335167|dbj|BAE84762.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 412

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 109/214 (50%), Gaps = 19/214 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD--RT 165
            +P ++ +VG  GVGKTT IGKL+   S     +V L   DT+R AA++QLK + +    
Sbjct: 214 RKPRIVALVGPTGVGKTTTIGKLAAGFSIVDKRRVALITADTYRVAAVEQLKTFGEIIGV 273

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             D V +  G        EA ++ + K  +++ IDTAGR  ++ + M+   ++   L++ 
Sbjct: 274 PVDVVMTPSG------LREAIQRHEDK--ELIFIDTAGRSPHHDLHMS---ELKAFLEKA 322

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P    ++L +  AT   +  R  E F  +  TT LI TK+D T  GG ++ ++    +P
Sbjct: 323 QPEL--TMLVMSAATQAADLARIYERFEPL--TTHLIFTKLDETIGGGTILNLLERTDLP 378

Query: 286 VYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGE 318
           V ++  G+ + +D+E    +  +  I G  D  E
Sbjct: 379 VAYITNGQNVPDDIEVATPERLTRYILGEGDRRE 412


>gi|114566405|ref|YP_753559.1| hypothetical protein Swol_0870 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337340|gb|ABI68188.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 395

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 21/202 (10%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLK 159
           KP       +  ++ +VG  GVGKTT I KL+  MS   G +V L   DT+R +A  QL+
Sbjct: 189 KPIELQRDKKGALVFMVGPTGVGKTTTIAKLAANMSFLEGKEVALITLDTYRVSAAQQLR 248

Query: 160 IWAD----RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            +AD      S  F   ++G        EA KQ Q K  D++ +DTAGR       M  +
Sbjct: 249 TFADIIGIPISVVFNPQDLG--------EAIKQYQKK--DIIFVDTAGRSPYKDEHMGEL 298

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
              I          P   + VL  TT    L  +     + G   +I TK+D +   G +
Sbjct: 299 QDFIEAAN------PDETILVLSVTTDSRDLINIYQQFNLIGVDKIIFTKLDESCNYGRI 352

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           +  +   + P+ +L  G+ + D
Sbjct: 353 LNTIYHIRKPIAYLTTGQNVPD 374


>gi|326389462|ref|ZP_08211029.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994467|gb|EGD52892.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 341

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 93/212 (43%), Gaps = 19/212 (8%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAA 146
           + E I   + P  K  N + S +   IL +G  GVGKTT I K++  +  + G  +ML  
Sbjct: 129 LKERIEAFMGPPQK-LNTEKSKK---ILFIGPTGVGKTTTIAKIASNLILNEGKNIMLVT 184

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D FR AA+DQLK + +             D   L      Q + +K D ++IDTAGR H
Sbjct: 185 ADIFRIAAVDQLKTYGEILGVPVKVVNNIFDLHKL------QPELEKYDAVLIDTAGRSH 238

Query: 207 NNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            +        K I  LK    +A        L ATT    L++V   +  AG   LI TK
Sbjct: 239 KDE-------KRINELKTFIKYANCDETYLCLSATTKSEDLKEVIKRYEFAGDYKLIFTK 291

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           +D T     ++  V     P+ +   G+ + D
Sbjct: 292 LDETDNYSSILNAVYYSGRPISYFTNGQIVPD 323


>gi|307264888|ref|ZP_07546450.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920146|gb|EFN50358.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 341

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 93/212 (43%), Gaps = 19/212 (8%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAA 146
           + E I   + P  K  N + S +   IL +G  GVGKTT I K++  +  + G  +ML  
Sbjct: 129 LKERIEAFMGPPQK-LNTEKSKK---ILFIGPTGVGKTTTIAKIASNLILNEGKNIMLVT 184

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            D FR AA+DQLK + +             D   L      Q + +K D ++IDTAGR H
Sbjct: 185 ADIFRIAAVDQLKTYGEILGVPVKVVNNIFDLHKL------QPELEKYDAVLIDTAGRSH 238

Query: 207 NNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            +        K I  LK    +A        L ATT    L++V   +  AG   LI TK
Sbjct: 239 KDE-------KRINELKTFIKYANCDETYLCLSATTKSEDLKEVIKRYEFAGDYKLIFTK 291

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           +D T     ++  V     P+ +   G+ + D
Sbjct: 292 LDETDNYSSILNAVYYSGRPISYFTNGQIVPD 323


>gi|196247618|ref|ZP_03146320.1| GTP-binding signal recognition particle SRP54 G- domain
           [Geobacillus sp. G11MC16]
 gi|196212402|gb|EDY07159.1| GTP-binding signal recognition particle SRP54 G- domain
           [Geobacillus sp. G11MC16]
          Length = 371

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 118/253 (46%), Gaps = 18/253 (7%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           E+E  L+R  +  +  +++++ LL + Y    + S   V     E++  ML  L  PF  
Sbjct: 114 EVERRLVRQGMSESYVREVMDRLLERWYTDKGERSAAVVSEWAKEVVRDMLSSL--PFAE 171

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
               + +VIL+ G  GVGKTT + K++ + + + G KV     DT+R AAIDQLK +A  
Sbjct: 172 AARQKKYVILL-GPTGVGKTTTLAKMAGRAVLEQGKKVGFITTDTYRIAAIDQLKTYAHI 230

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
             A F       D     + A K+  A   D++ +DTAGR   N   +A + + I     
Sbjct: 231 LHAPFAVCYNADD-----FRAAKRNLA-DCDLVFVDTAGRNFRNPQYVAELQQTIEF--- 281

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
               +    L VL AT   + ++ V    +      LI+TK+D T   G +  +++  ++
Sbjct: 282 ---DSETETLLVLAATGKYDDMKAVYDRFSGLPLDRLIITKLDETDSYGAVFNLLLDSRL 338

Query: 285 PVYFLGVGEGIND 297
              +   G+ + D
Sbjct: 339 GAAYFTNGQNVPD 351


>gi|284106148|ref|ZP_06386246.1| signal recognition particle-docking protein FtsY [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283830083|gb|EFC34351.1| signal recognition particle-docking protein FtsY [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 85

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 48/76 (63%)

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            VL  LD T GQNA+ Q + FH   G TGL +TK+DGTA+GG ++ I     IPV  +G+
Sbjct: 1   EVLLTLDGTIGQNAVAQAKQFHEAIGVTGLALTKLDGTAKGGVVLAIAEELAIPVRLIGI 60

Query: 292 GEGINDLEPFVAKDFS 307
           GE   DL+ F A+ F+
Sbjct: 61  GEQEEDLQDFRAQAFA 76


>gi|34557958|ref|NP_907773.1| flagellar biosynthesis regulator FlhF [Wolinella succinogenes DSM
           1740]
 gi|34483676|emb|CAE10673.1| FLAGELLAR BIOSYNTHESIS PROTEIN FLHF FLAGELLA ASSOCIATED
           GTP-BINDINGPROTEIN [Wolinella succinogenes]
          Length = 467

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 21/190 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT--SA 167
           ++++VG  GVGKTT + KL+    +M     KV +   DT+R  A+DQL  +A +   S 
Sbjct: 267 IVMLVGPTGVGKTTTLAKLAARYSRMMSKNYKVGIITLDTYRIGAVDQLMFYAKKMKLSI 326

Query: 168 DFVC--SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           D V   +E      +L Y           D ++IDT G   ++   +     M+R     
Sbjct: 327 DTVVDPTEFVGAINSLKY----------CDYILIDTVGSSQHDKQKI----DMLRSYVNS 372

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           DPH    V  V+ +TT    LR +    +V     LI+TK+D T   G +  ++   K P
Sbjct: 373 DPHCSIDVSLVVSSTTKYEDLRDIYHTFSVLNVDTLILTKLDETRGFGNVFSLIHETKKP 432

Query: 286 VYFLGVGEGI 295
           V +L +G+ +
Sbjct: 433 VSYLSIGQEV 442


>gi|163782185|ref|ZP_02177184.1| flagellar biosynthesis FlhF [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882717|gb|EDP76222.1| flagellar biosynthesis FlhF [Hydrogenivirga sp. 128-5-R1-1]
          Length = 380

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 133/293 (45%), Gaps = 43/293 (14%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV---AQKIVEELLTKRYAKDVSVQR 83
           +LK  +++++ + R  D  +E       R D+G  +   AQ+++  ++ +   KDV+ + 
Sbjct: 79  RLKSTLSEVMKNVRSQDEEKE-----TSRRDVGEGLSMRAQRVLSRMVYRGVRKDVARRL 133

Query: 84  VL----YDVS-------ELIHKMLMPLSKPFNWD--------FSHRPHVILVVGVNGVGK 124
           V     YD+        E I+  LM   + F  +        F + P +++++G  GVGK
Sbjct: 134 VEEACGYDIELGKLDFKEEIYPSLM---ESFRKNIVIEGERVFRNTPRIMVLIGPTGVGK 190

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT I KLS     AG +  +   D++R  A++QL+ + +     F      +D      +
Sbjct: 191 TTTIAKLSYLFKRAGKRPGVITLDSYRVGAVEQLRAFINIMELPFRV----ADTPEEFLK 246

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           + ++   +  D++++DTAGR  ++ + +         LK     A   +   L A   + 
Sbjct: 247 SLEEMDNR--DLILVDTAGRSQHDRLRLNE-------LKLFLESAETQIYLTLSANLSEL 297

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            + +V M   +    GLI +K+D T+  G +I +    K+P+     G+ + D
Sbjct: 298 VMYEVIMQFGMFPIKGLIFSKLDETSYPGNVINVAYRTKLPILCFTTGQTVPD 350


>gi|242381496|emb|CAY39211.1| signal recognition particle docking protein [Streptomyces
           clavuligerus ATCC 27064]
          Length = 328

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 120/214 (56%), Gaps = 9/214 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL----- 70
           +L    A +   L +G+  ++S   LD+   EE+E+ L+ +D+GVA  Q++VE L     
Sbjct: 118 RLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLTADVGVAPTQELVERLRERVK 177

Query: 71  -LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            L  R   ++        ++ +   +   +      D    P V++VVGVNG GKTT  G
Sbjct: 178 VLGTRTPDELRTLLREELLTLVGTDLDRAVKTESGLDT---PGVVMVVGVNGTGKTTTTG 234

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++A++A K+ 
Sbjct: 235 KLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEG 294

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
            A+  DV++IDTAGRLH  + LM  +GK+ RV++
Sbjct: 295 IAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVE 328


>gi|289578413|ref|YP_003477040.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter italicus
           Ab9]
 gi|297544689|ref|YP_003676991.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528126|gb|ADD02478.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter italicus
           Ab9]
 gi|296842464|gb|ADH60980.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 341

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 89/194 (45%), Gaps = 19/194 (9%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           + +   IL +G  GVGKTT I K++  +  + G  +ML   D FR AA+DQLK + +   
Sbjct: 145 TEKSKKILFIGPTGVGKTTTIAKIASNLILNEGKNIMLVTADIFRIAAVDQLKTYGEILG 204

Query: 167 ADF-VCSEIGSDAAALAYEAFK-QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
               V + I        +E  K Q + +K DV++IDTAGR H +        K I  LK 
Sbjct: 205 VPVKVVNNI--------FELHKLQLEFEKYDVVLIDTAGRSHKDE-------KRINELKT 249

Query: 225 LDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
              +A        L ATT    L++V   +  A    LI TK+D T     ++  V    
Sbjct: 250 FIKYANCDETYLCLSATTKSEDLKEVIKRYEFAENYRLIFTKLDETDNYSSILNAVYYSG 309

Query: 284 IPVYFLGVGEGIND 297
            P+ +   G+ + D
Sbjct: 310 RPISYFTNGQIVPD 323


>gi|224419051|ref|ZP_03657057.1| flagellar biosynthesis regulator FlhF [Helicobacter canadensis MIT
           98-5491]
          Length = 265

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 25/217 (11%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAA 146
           E++ KM+   ++  N   S+  +++++VG  GVGKTT + KL+    +M +   KV +  
Sbjct: 47  EVLRKMVYARTENLN---SNVKNIMMLVGPTGVGKTTTLAKLAARYSRMLNKNYKVGIIT 103

Query: 147 GDTFRSAAIDQLKIWADRT--SADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTA 202
            DT+R  A+DQL  +A +   S D V             E F  A    K  D ++IDT 
Sbjct: 104 LDTYRIGAVDQLMFYAKKMKLSIDTVVDT----------EEFINALDSLKYCDYILIDTV 153

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           G   ++   +  +   +      DP+    V  V+ ATT    L+ +    +  G   LI
Sbjct: 154 GSSQHDRSKLESLKSFVNA----DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTLI 209

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298
            TK+D T   G +  ++   K    +  +G+ + NDL
Sbjct: 210 FTKLDETHSYGNIFSLIYETKKATSYFSIGQEVPNDL 246


>gi|309808797|ref|ZP_07702682.1| Signal peptide binding domain protein [Lactobacillus iners LactinV
           01V1-a]
 gi|308167923|gb|EFO70056.1| Signal peptide binding domain protein [Lactobacillus iners LactinV
           01V1-a]
          Length = 300

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA     D +IIDTAGRL  +  LM  +  ++ V        P +++ V DA TGQ A  
Sbjct: 3   QADRNHNDYVIIDTAGRLEIDDQLMDELKNIVDVAH------PENIILVADAMTGQVAAT 56

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             E F++    TGLI+TK+DG  RGG  + I     +P+ F G GE + +L+ F     +
Sbjct: 57  VAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDRMA 116

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 117 SRILGMGD 124


>gi|313142558|ref|ZP_07804751.1| flagellar biosynthesis regulator FlhF [Helicobacter canadensis MIT
           98-5491]
 gi|313131589|gb|EFR49206.1| flagellar biosynthesis regulator FlhF [Helicobacter canadensis MIT
           98-5491]
          Length = 252

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 25/217 (11%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAA 146
           E++ KM+   ++  N   S+  +++++VG  GVGKTT + KL+    +M +   KV +  
Sbjct: 34  EVLRKMVYARTENLN---SNVKNIMMLVGPTGVGKTTTLAKLAARYSRMLNKNYKVGIIT 90

Query: 147 GDTFRSAAIDQLKIWADRT--SADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTA 202
            DT+R  A+DQL  +A +   S D V             E F  A    K  D ++IDT 
Sbjct: 91  LDTYRIGAVDQLMFYAKKMKLSIDTVVDT----------EEFINALDSLKYCDYILIDTV 140

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           G   ++   +  +   +      DP+    V  V+ ATT    L+ +    +  G   LI
Sbjct: 141 GSSQHDRSKLESLKSFVNA----DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTLI 196

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298
            TK+D T   G +  ++   K    +  +G+ + NDL
Sbjct: 197 FTKLDETHSYGNIFSLIYETKKATSYFSIGQEVPNDL 233


>gi|237751041|ref|ZP_04581521.1| flagellar biosynthesis regulator FlhF [Helicobacter bilis ATCC
           43879]
 gi|229373486|gb|EEO23877.1| flagellar biosynthesis regulator FlhF [Helicobacter bilis ATCC
           43879]
          Length = 482

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 104/209 (49%), Gaps = 21/209 (10%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGD 148
           E++ KM+    +P + D + +  ++++VG  GVGKTT + KL+ + S +   KV +   D
Sbjct: 267 EVLRKMVY--CRPESKDMTKK--IMMLVGPTGVGKTTALAKLAARFSLEKKAKVGIITLD 322

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLH 206
           ++R  A+ QL+ +A+R           S    +A E F QA    +  D +++DTAGR  
Sbjct: 323 SYRIGALQQLEWYAERMRI--------SIQMVVAPEEFLQALDSLRYCDYILVDTAGRSQ 374

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
           N+S  +A I K ++   +++         V+ ATT    LR +    ++     LI +K+
Sbjct: 375 NDSERIAQIKKYLQGDYKINTSL------VMSATTKFEDLRDIYDAFSILNLDTLIFSKL 428

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           D +   G +  +    K P+ +  +G+ +
Sbjct: 429 DESRGLGNIFSLAYETKKPISYFSIGQEV 457


>gi|311068162|ref|YP_003973085.1| flagellar biosynthesis regulator FlhF [Bacillus atrophaeus 1942]
 gi|310868679|gb|ADP32154.1| flagellar biosynthesis regulator FlhF [Bacillus atrophaeus 1942]
          Length = 368

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 120/265 (45%), Gaps = 30/265 (11%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L+D  I+  I  +V  +++ + ++   A D++ + V+  + +++ + L P  +   W  +
Sbjct: 121 LQDAGIKDSIKTSVMSRLLRDSIS---AGDLTEENVVRKLQDVLCEALPPKDR---WQEA 174

Query: 109 HRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
                I++ G  G GKTT + KL+   M D   K+     DT+R AA++QLK +A+   A
Sbjct: 175 ISSQYIVLFGSTGAGKTTTLAKLAASSMLDKHKKIAFITTDTYRIAAVEQLKTYAELLQA 234

Query: 168 DF-VCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              VC            E F QA+    + D + IDTAGR            + I  LK 
Sbjct: 235 PMEVC---------YTKEEFLQAKETFSEYDHVFIDTAGRNFKEQ-------QYIEELKE 278

Query: 225 LDP--HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             P  ++  S L VL AT+    ++ +    +       I TK D TA  G +  I+   
Sbjct: 279 TIPFENSIQSFL-VLSATSKYEDMKDIVKRFSSVPVNQFIFTKADETASLGSVFHILAES 337

Query: 283 KIPVYFLGVGEGI-NDLEPFVAKDF 306
           KI   F+  G+ +  D++    +DF
Sbjct: 338 KIGAGFITNGQNVPEDIQSVSPQDF 362


>gi|319649546|ref|ZP_08003702.1| hypothetical protein HMPREF1013_00306 [Bacillus sp. 2_A_57_CT2]
 gi|317398708|gb|EFV79390.1| hypothetical protein HMPREF1013_00306 [Bacillus sp. 2_A_57_CT2]
          Length = 376

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 115/255 (45%), Gaps = 30/255 (11%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRY-----AKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +L   +I  +V   +++ LL K Y     AKD  +   L++  ELI ++      PF   
Sbjct: 124 ILDEQEIDKSVQDHVLQALLEKWYLRGANAKDSEIDAWLHE--ELIKQIE---DIPFEG- 177

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            S     I V G  GVGKTT + K++ + +     K      DT+R AAIDQLK +A   
Sbjct: 178 ISFSKKYINVAGPTGVGKTTTLAKMAAECVIKHRKKAAFITADTYRIAAIDQLKTYASIL 237

Query: 166 SADF-VCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           +    VC  I         E F+QA  + K+ DV++IDTAGR   N   +  +  +I   
Sbjct: 238 NMPLEVCYTI---------EDFRQAADKLKEFDVVLIDTAGRNFRNKQYVEDLKNVIDFE 288

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             ++         VL  T+ Q  + ++    ++     LI TK D T+  G +  I+  +
Sbjct: 289 NEME------TFLVLSLTSKQKDMEEIYNQFSIIDIDKLIFTKADETSTYGSMYNIIHKY 342

Query: 283 KIPVYFLGVGEGIND 297
           K    ++  G+ + D
Sbjct: 343 KKGAAYITNGQDVPD 357


>gi|253827991|ref|ZP_04870876.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511397|gb|EES90056.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
          Length = 465

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 21/215 (9%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAA 146
           E++ KM+   ++  N   S+  +++++VG  GVGKTT + KL+ + S   +   KV +  
Sbjct: 247 EVLRKMVYARTENLN---SNVKNIMMLVGPTGVGKTTTLAKLAARYSRMLNKNYKVGIIT 303

Query: 147 GDTFRSAAIDQLKIWADRT--SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            DT+R  A+DQL  +A +   S D V   + ++    A ++ K       D ++IDT G 
Sbjct: 304 LDTYRIGAVDQLMFYAKKMKLSIDTV---VDTEEFINALDSLKYC-----DYILIDTVGS 355

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
             ++   +  +   +      DP+    V  V+ ATT    L+ +    +  G   LI T
Sbjct: 356 SQHDRSKLESLKSFVNA----DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTLIFT 411

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298
           K+D T   G +  ++   K    +  +G+ + NDL
Sbjct: 412 KLDETHSYGNIFSLIYETKKATSYFSIGQEVPNDL 446


>gi|300871799|ref|YP_003786672.1| flagellar biosynthesis regulator FlhF [Brachyspira pilosicoli
           95/1000]
 gi|300689500|gb|ADK32171.1| flagellar biosynthesis regulator, FlhF [Brachyspira pilosicoli
           95/1000]
          Length = 606

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 22/217 (10%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           D   +  +++ VG  GVGKTT I K++ +   +G KV     D +R AA+DQL+ +A   
Sbjct: 404 DIGSKKKIVVFVGPTGVGKTTTIPKIAAQYMRSGKKVSFVTIDNYRIAAVDQLQRYASIM 463

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVD---VLIIDTAGRLHNNSILMAGIGKMIRVL 222
              F      S   AL      +A+ +K+D   +L IDT GR   +   +  + K    +
Sbjct: 464 KVPFTS---ASTPEAL------RAEIRKLDSSSLLFIDTMGRSPKSVEEIVSMSKYFNTV 514

Query: 223 KRLDPHAPHSVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            R D      V  V+ +T   ++AL+ +  F   A   G+I+TK+D T      +  +  
Sbjct: 515 GRFD----MDVQLVMSSTAKYKDALKIMNAFKP-ANYKGIILTKVDETDYLASSLCAISK 569

Query: 282 HKIPVYFLGVGEGI-NDLEPFVAKDFS-AVITGCLDY 316
            K+P+ ++  G+G+  D+ P  AK ++  +I G   Y
Sbjct: 570 SKVPITYVTYGQGVPKDIAP--AKRYAHKMIEGLFGY 604


>gi|95929869|ref|ZP_01312610.1| GTP-binding signal recognition particle SRP54, G-domain
           [Desulfuromonas acetoxidans DSM 684]
 gi|95134165|gb|EAT15823.1| GTP-binding signal recognition particle SRP54, G-domain
           [Desulfuromonas acetoxidans DSM 684]
          Length = 437

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 127/259 (49%), Gaps = 22/259 (8%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPL 99
           D  + + L  L I ++    +A     +L TK+ A D +V    +   ++EL+      L
Sbjct: 178 DQQIHDGLTRLGIEAEAASTIAHYASSQLTTKQIA-DPAVLNAFFAKTIAELVQTTGSIL 236

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQL 158
            +P     S R   I ++G  GVGKTT I KL+   +   G +V L   DT+R AA++QL
Sbjct: 237 PQPGE---SKR---IALIGPTGVGKTTTIAKLAASHLLAGGKRVALVTIDTYRIAAVEQL 290

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K++ +  +   +  E+  +A  L +E  ++   K  D+++IDTAGR   +S+ +  + + 
Sbjct: 291 KVYGEIMN---LPVEVVMNADQL-HEVLERHSDK--DLVLIDTAGRSPKDSVSLQELEEF 344

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           + V   ++ H       V+ ATT +  L ++    +      +++TK+D     G L+ I
Sbjct: 345 LHVDPNIEAHL------VMSATTRERDLYEIYGRFSALSPQSMLLTKLDECNSLGVLLNI 398

Query: 279 VVTHKIPVYFLGVGEGIND 297
            + +  P+ +L  G+ + +
Sbjct: 399 HLRNNCPISYLANGQKVPE 417


>gi|28211315|ref|NP_782259.1| flagellar biosynthesis regulator FlhF [Clostridium tetani E88]
 gi|28203755|gb|AAO36196.1| flagellar biosynthesis protein flhF [Clostridium tetani E88]
          Length = 377

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 28/268 (10%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E++ +L  +DI   + +KI++EL              + +++E + K    +        
Sbjct: 130 EIKSILKDNDISEDIIEKILDEL------------NEVENITEALEKTKEFIEDRVRVSS 177

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
                 +++VG  GVGKTT I KL+ ++S     KV L   DT+R  A++QLK +AD   
Sbjct: 178 EDLKGAVVLVGPTGVGKTTTIAKLAGRLSLVEKKKVGLITVDTYRIGAVEQLKTYADIMK 237

Query: 167 ADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             F V   I     A+          K  +V+++DT GR   N + ++ +   I  +   
Sbjct: 238 IPFKVVFSIKDMEDAIE-------DMKNCEVILVDTTGRSSKNVMQISELRAFIEKVNSE 290

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           + H       V+ +TT    +  +   +   G   +I+TK+D T   G ++ I  + K P
Sbjct: 291 NIHL------VISSTTKNKDIDSIVEGYKTLGYKSVIITKLDETTTYGSILNIANSTKKP 344

Query: 286 VYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           + F+  G+ +  D+     K+ + +I G
Sbjct: 345 ISFITTGQNVPEDIRLVTPKEITGLILG 372


>gi|225850279|ref|YP_002730513.1| flagellar biosynthetic protein FlhF [Persephonella marina EX-H1]
 gi|225646263|gb|ACO04449.1| flagellar biosynthetic protein FlhF [Persephonella marina EX-H1]
          Length = 374

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 132/275 (48%), Gaps = 27/275 (9%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK--------MLMPL 99
           EL + L+  D+   VA+K+V+E        D+   R  +D++ L  K          +  
Sbjct: 116 ELINQLLNRDVLPDVAKKLVKEGC----GLDIDTNR--WDLNTLTSKEALIKGIRKYIKF 169

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           + PF+ +      ++  VG  GVGKTT + K+ S  + +  +KV + + DTF+  A  Q 
Sbjct: 170 TGPFDQE-KEGLKILTFVGPTGVGKTTNLFKIASHFVINQKMKVAVISTDTFKVGATQQA 228

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +I+A+  +  F  +   S++  L       ++ +  D ++IDT GR H +      +G++
Sbjct: 229 RIYANILNIPFYSA---SESKKLKSTV---SELENYDFILIDTVGRSHYD---YWRLGEI 279

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
             +L  L  +  H VL V      ++A   V  + +      L+ TK+D T++ G L+ +
Sbjct: 280 KEILGDLSENM-HIVLTVSCNFKNEDAFEVVNRYSSFFDIDSLLFTKIDETSKPGLLLNL 338

Query: 279 VVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
            V  KIPV ++  G+ +  D++    ++ ++ I G
Sbjct: 339 PVETKIPVSYISTGQRVPEDIKILKPENITSYILG 373


>gi|188586040|ref|YP_001917585.1| GTP-binding signal recognition particle SRP54 G- domain
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350727|gb|ACB84997.1| GTP-binding signal recognition particle SRP54 G- domain
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 466

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 121/258 (46%), Gaps = 23/258 (8%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
           DLL+  D+   +AQ+++ + + +   + +   Q  + ++  +I K L     P     + 
Sbjct: 210 DLLLEHDVIDQLAQELISQTMKEMDFRGLEDEQAFVRELKTIIGKKLSEQVTPLKDKNTT 269

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK---MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            P +I ++G  GVGKTT + KL+ +   M +A  +V L   DT+R AA++QLK + D  S
Sbjct: 270 GPRIISMIGPTGVGKTTTVAKLAARHTLMENA--EVGLITIDTYRIAAVEQLKTYGDILS 327

Query: 167 ADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                         +  +  K A  + K  D++IIDTAGR H N + M  +   I     
Sbjct: 328 LPV--------EVVMTPQELKDAMHKLKDKDLIIIDTAGRSHKNEMQMKELKGFIET--- 376

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            +PH  H VL +    T    L+ +   +       LI+TK D T   G L+ ++   + 
Sbjct: 377 CEPHINHLVLSL---GTKYKDLKNIIAKYNHINFNSLILTKTDETDNLGNLLNLLWEFQT 433

Query: 285 PVYFLGVGEGI-NDLEPF 301
              ++  G+ + +DLE F
Sbjct: 434 GCSYVTTGQNVPDDLEEF 451


>gi|253682194|ref|ZP_04862991.1| flagellar biosynthetic protein FlhF [Clostridium botulinum D str.
           1873]
 gi|253561906|gb|EES91358.1| flagellar biosynthetic protein FlhF [Clostridium botulinum D str.
           1873]
          Length = 382

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 126/270 (46%), Gaps = 34/270 (12%)

Query: 49  LEDLLIRSDIGVAVAQKIVE--ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +E++L  SD+   V  KI+   E  T+   +   V++ + D++ + H             
Sbjct: 136 IEEMLEESDLNKNVIAKILSIVENNTEDIDEKEKVRKAIKDITSINH------------- 182

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADR 164
            +    ++++VG  GVGKTT I KL+ K++  D   KV L   DT+R  AI+QL  +A+ 
Sbjct: 183 -TKMEGIVVLVGPTGVGKTTTIAKLAGKLALIDKK-KVGLITVDTYRIGAIEQLSTYANI 240

Query: 165 TSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
            S  F     I    AAL        + K+ DV+++DT GR   N + +A +   I+   
Sbjct: 241 MSIPFESVFSIKEMEAAL-------DRMKECDVVLVDTTGRSSKNIMQIAELNAFIQ--- 290

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                   ++  V+ +TT    +  +   +       +I+TK+D T   G ++ I+    
Sbjct: 291 ---KTNTENIYLVISSTTKDRDVESIVEGYKTLNYANVIITKLDETTTYGSILNILTKAN 347

Query: 284 IPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
            P+ F+  G+ + +D +   +++ + ++ G
Sbjct: 348 KPLSFVTTGQNVPDDFKNITSEEIARLVLG 377


>gi|328948395|ref|YP_004365732.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Treponema succinifaciens DSM 2489]
 gi|328448719|gb|AEB14435.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Treponema succinifaciens DSM 2489]
          Length = 447

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 24/197 (12%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS----------DAGLKVMLAAGDTFRSAAIDQLKI 160
           P VI++VG  GVGKTT + K+S ++S              ++ +   DT R AAI+QLK 
Sbjct: 225 PKVIIIVGPTGVGKTTTVAKMSSRISIDYKKNREKYKYPPRIRMITTDTMRVAAIEQLKR 284

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           WA+  + +   +E   D   L       +     D + IDT+G   N+      I KM  
Sbjct: 285 WAEIINVNVDKAESSEDLKILC-----DSYVSNSDYIFIDTSGYSPND---YENIAKMRT 336

Query: 221 VL--KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +L  K L+ +   ++   + A   +N +R  E F   +    +I+TK D T   G +I +
Sbjct: 337 ILNVKNLNENVYLAITAGVSAKDLENIIRNYEGFDFKS----IIVTKCDETTSFGRVISV 392

Query: 279 VVTHKIPVYFLGVGEGI 295
           +     PV ++  G+ +
Sbjct: 393 LSEKNKPVSWITTGQDV 409


>gi|288573008|ref|ZP_06391365.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568749|gb|EFC90306.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 447

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 17/189 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           ++ +G  GVGKTT I KL+   S     KV+LA  DT+R AA++QL+ +A       V  
Sbjct: 255 VMFIGPTGVGKTTTIAKLAAANSLWEDRKVLLATADTYRIAAVEQLRTYAKILG---VPV 311

Query: 173 EIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           E+  D   L     K  + K+ V+++++DTAGR   +S  +    ++          AP 
Sbjct: 312 EVIFDPQDL-----KGIREKRDVELILLDTAGRSQRDSRRLDEAKELYEAF------APE 360

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
           SV  V+ A++    +  V         + LI TK+D T   G ++ I +   IP+ FL V
Sbjct: 361 SVHLVISASSKYRDMLDVIERMGNMPISHLIFTKLDETLTLGPVLEIALNFDIPISFLTV 420

Query: 292 GEGI-NDLE 299
           G+ + ND+E
Sbjct: 421 GQNVPNDIE 429


>gi|121533741|ref|ZP_01665568.1| GTP-binding signal recognition particle SRP54, G- domain
           [Thermosinus carboxydivorans Nor1]
 gi|121307732|gb|EAX48647.1| GTP-binding signal recognition particle SRP54, G- domain
           [Thermosinus carboxydivorans Nor1]
          Length = 363

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 119/254 (46%), Gaps = 23/254 (9%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRY---AKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           L  LL+++D+   +A+ +V+ L        A    V+++L+D      + +  ++ P N 
Sbjct: 111 LYQLLVKNDVEPDIARNLVQGLPDDNSIIGASQPIVRQLLFDRLCNYFQKIEGITIPQNG 170

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164
                  V+ ++G  GVGKTT I KL+   +   G KV L   DT+R AA++QLK +AD 
Sbjct: 171 T-----KVVALIGPTGVGKTTTIAKLAANFALRDGYKVALITADTYRIAAVEQLKTYADI 225

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                       +  A  Y      + +   +++IDTAGR  NN   +A +  ++ V   
Sbjct: 226 IGIPIEIVYTPDEMKAALY------RHRDKHLVLIDTAGRSPNNQYQLAELQALLSVDPY 279

Query: 225 LDPHAPHSVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           +D H       VL  TT  ++AL  V+ F +V      + TK+D  +  G ++ ++    
Sbjct: 280 IDTHL------VLSTTTKYKDALELVKKF-SVCSPQKFLFTKIDEASNLGTVLNLLYQFP 332

Query: 284 IPVYFLGVGEGIND 297
             + ++  G+ + D
Sbjct: 333 TKLSYVTNGQNVPD 346


>gi|78042670|ref|YP_359857.1| flagellar biosynthesis regulator FlhF [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77994785|gb|ABB13684.1| flagellar biosynthesis protein FlhF [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 350

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 27/248 (10%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS-------ELIHKMLMPLSKPFNWDFSHR 110
           + + +A  IVE++L       + +Q  L +V+       E + + L+ L KP+  +    
Sbjct: 104 LKLELAPDIVEQIL-------LELQDFLEEVAPEETSGVERVKEYLINLIKPYYENIQDF 156

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P   L+ G  GVGKTT + K++ +++    K +     DTFR  A++QLKI+        
Sbjct: 157 PLKALI-GPTGVGKTTTLAKIAGRLAIHEEKPIRFITLDTFRVGAVEQLKIYGKYLGT-- 213

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
              ++      L     KQ +    + + IDTAGR       +  +   +  +K+     
Sbjct: 214 -TVKVAGSPMELWRAVQKQNEG---ETIFIDTAGRPSKKQNQIQELAGFLEAVKK----- 264

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              +  V+ AT       ++    +  G    I+TK+D T + G LI ++V  K P+ +L
Sbjct: 265 EKDIYLVISATVKPEDAEKIAKDFSPCGFNKFIVTKIDETDKFGVLINLIVKFKKPIVYL 324

Query: 290 GVGEGIND 297
           GVG+ + D
Sbjct: 325 GVGQNVPD 332


>gi|269792923|ref|YP_003317827.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100558|gb|ACZ19545.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 402

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 116/251 (46%), Gaps = 32/251 (12%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-SKPFNWDFSHRP 111
           L+ +D+   VAQ+I+            S +R   D+ EL+   +  + S P +     R 
Sbjct: 162 LVEADVDPEVAQRIL------------SSRRGGEDLLELLSSRVRVMGSDPVSAMGGRR- 208

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
             ++ VG  GVGKTT I KL+   S   G KV LA  DT+R AA++QL+ +A        
Sbjct: 209 --VMFVGPTGVGKTTTIAKLAAVHSLWEGRKVALATADTYRIAAVEQLRTYAKILGIPME 266

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL-DPHA 229
                 D   L       ++ +  D++++DTAGR   ++       K +  LK L D   
Sbjct: 267 VVFEAKDFEGLV------SKHQGCDLIMLDTAGRSSRDA-------KKMEELKWLYDAFQ 313

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P +V  VL A      + +V    AV     +I TK+D T   G L+ ++    +PV F 
Sbjct: 314 PDAVHLVLAANLKYKDMLKVIDRMAVVPIGSVIFTKLDETYSFGPLLNVLEDFNLPVSFF 373

Query: 290 GVGEGI-NDLE 299
            VG+ + ND+E
Sbjct: 374 TVGQNVPNDIE 384


>gi|260438785|ref|ZP_05792601.1| flagellar biosynthesis protein FlhF [Butyrivibrio crossotus DSM
           2876]
 gi|292808774|gb|EFF67979.1| flagellar biosynthesis protein FlhF [Butyrivibrio crossotus DSM
           2876]
          Length = 415

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 106/253 (41%), Gaps = 30/253 (11%)

Query: 62  VAQKIVEELLTKRYA------------KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
           +  K++E  + ++YA            K+ ++  +L   + +  K+++ L +P   +   
Sbjct: 158 IYNKLMENEMDEKYANAIINDINASLKKESNIDSIL---AAVYQKIILKLGEPDGIETDE 214

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD----R 164
           R  +I  +G  GVGKTT I KL+     + G  V +   DT+R AA++QL  +A      
Sbjct: 215 RKKIIFFIGPTGVGKTTTIAKLASDFKLNKGKSVAMVTADTYRIAAVEQLNTYAGILDVP 274

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            S  +  SEI       +            DV+ +DTAGR H N      + ++I  +K 
Sbjct: 275 VSVAYSPSEICGCLNEFS----------GYDVIFVDTAGRSHKNEEQKDELIELINNVKN 324

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
               A      VL  TT    L  +   +       L+ TK+D T   G +I +      
Sbjct: 325 GGYDADIETFLVLSVTTKYKDLINIADTYKEIDDYRLLFTKLDETVTLGNIINLKCYTGA 384

Query: 285 PVYFLGVGEGIND 297
           P+ +   G+ + D
Sbjct: 385 PLSYTTSGQNVPD 397


>gi|187778766|ref|ZP_02995239.1| hypothetical protein CLOSPO_02361 [Clostridium sporogenes ATCC
           15579]
 gi|187772391|gb|EDU36193.1| hypothetical protein CLOSPO_02361 [Clostridium sporogenes ATCC
           15579]
          Length = 408

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 23/191 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD-- 168
           V ++VG  GVGKTT I KL+ K+S  D   KV L   DT+R  A++QLK +AD  +    
Sbjct: 214 VTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPFK 272

Query: 169 --FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             F   ++      L Y           DV+++DT GR   N + ++ +   I  +K   
Sbjct: 273 VVFSIKDMEKSIIDLDY----------CDVILVDTTGRSSKNMMQISELRAFIEKIK--- 319

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                SV  V++A+T    +  +   + +     +I+TK+D T+  G ++ I+   K P+
Sbjct: 320 ---EKSVHLVINASTKNKDIETIIKGYTILEYENIIITKLDETSTYGSILTILDKGKKPI 376

Query: 287 YFLGVGEGIND 297
            F+  G+ + D
Sbjct: 377 SFITTGQDVPD 387


>gi|309359570|emb|CAP32620.2| hypothetical protein CBG_13942 [Caenorhabditis briggsae AF16]
          Length = 608

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 122/275 (44%), Gaps = 44/275 (16%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMP--- 98
           E++ D LI  ++    A+KI + +++K   K V     + Q V   V E + ++L P   
Sbjct: 341 EKMRDNLIMKNVAAEPAEKICQSVVSKLEGKVVNNFSRTAQEVRTAVRESLVQLLTPKHR 400

Query: 99  ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
              L          RP+VI+  GVNGVGK+T + K++  +++   +V++AAGDTFR+ A+
Sbjct: 401 VDILRDVIEAKKEGRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIAAGDTFRAGAV 460

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+      +A      +   +  L  + + +  A      I   A R           
Sbjct: 461 EQLRTHTRHLNA------LHPQSVHLYEQGYGKDAAGLAAAAIKIAAER---------DF 505

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAVAGTT-----GLIMT 264
             +IRV      + P  VL V +A  G  A+ Q+  F      HA  G       G+++T
Sbjct: 506 DVLIRV------NEPDLVLFVGEALVGNEAVDQLVKFNEALANHAAPGQKPRLIDGIVLT 559

Query: 265 KMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           K D    + G  + +      P+ F+G G+   DL
Sbjct: 560 KFDTIDDKVGAAVSMTYITGQPIVFVGCGQTYADL 594


>gi|221109366|ref|XP_002169179.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 159

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 29/150 (19%)

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSA------------DFVCSE-IGSDAAALAYEAFK 187
           +VM+AA DTFRS A++QL+    R  A             F+  +  G DAAA++ EA  
Sbjct: 11  RVMIAACDTFRSGAVEQLRTHTCRLKALHPKASPSAPEQVFLYDKGYGKDAAAVSMEAIN 70

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+  K DV+++DTAGR+ +N  LM  + K+I++      + P+ VL V +A  G + + 
Sbjct: 71  LAKDLKCDVVLVDTAGRMQDNEPLMRSLAKLIKI------NEPNLVLFVGEALVGNDGVD 124

Query: 248 QVEMFH-AVAGTT---------GLIMTKMD 267
           Q+  F+ A+A  +         G+++TK D
Sbjct: 125 QLRKFNQALADHSDVNNPHLIDGIVLTKFD 154


>gi|312879608|ref|ZP_07739408.1| flagellar biosynthetic protein FlhF [Aminomonas paucivorans DSM
           12260]
 gi|310782899|gb|EFQ23297.1| flagellar biosynthetic protein FlhF [Aminomonas paucivorans DSM
           12260]
          Length = 428

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 26/249 (10%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L+RS++   VA +++EE   +   ++++        + L  ++ +  + P+N     R  
Sbjct: 184 LLRSEVDPEVASRLLEEF-HREPGENLA--------AWLAGRIPVLAADPWNALGGKR-- 232

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            I+ VG  GVGKTT I K++   S   G KV+L   DT+R AA++QL+ +A       + 
Sbjct: 233 -IMFVGPTGVGKTTSIAKIAAIHSLWEGRKVVLVTADTYRIAAVEQLRTYAKILG---IP 288

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            E+  D   L     K    +  D++++DTAGR H ++  M  +  +  +        P 
Sbjct: 289 LEVAFDPQELEGILTKH---RNADLVLLDTAGRSHKDAKRMDELKGLHEIF------CPD 339

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
           +V  VL +      +  V     V     ++ TKMD T+  G L+ +V    +P+ F  V
Sbjct: 340 AVHLVLASNLKYRDMLDVIDRMGVVPLKSILFTKMDETSTFGPLLNVVEDFDLPLSFFTV 399

Query: 292 GEGI-NDLE 299
           G+ + ND+E
Sbjct: 400 GQNVPNDIE 408


>gi|325107976|ref|YP_004269044.1| flagellar biosynthetic protein FlhF [Planctomyces brasiliensis DSM
           5305]
 gi|324968244|gb|ADY59022.1| flagellar biosynthetic protein FlhF [Planctomyces brasiliensis DSM
           5305]
          Length = 437

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 26/196 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169
           ++ +VG  GVGKTT I KL+   ++ D  L++ L   DT+R AA++QL+ +A+       
Sbjct: 242 IVALVGPTGVGKTTTIAKLASNFRLRD-NLRLGLITVDTYRIAAVEQLRTYAEIIDLPMK 300

Query: 170 ---VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 E+    A LA           +D+++IDTAGR   + +    I ++   L R+ 
Sbjct: 301 VVTTPDEMPQAVAELA----------DMDLILIDTAGRSPQDEL---RIQELKTFLDRIP 347

Query: 227 PHAPHSVLQVLDATTGQNALR-QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               H VL    ATT Q  LR  VE F+ +      ++TK+D     G ++ +     +P
Sbjct: 348 VDETHLVL---SATTSQRNLRLTVETFNVIQPQAA-VLTKLDEAPERGAIVTLSAQLGLP 403

Query: 286 VYFLGVGEGI-NDLEP 300
           V +   G+ +  D+EP
Sbjct: 404 VSYFTTGQNVPQDIEP 419


>gi|291278830|ref|YP_003495665.1| flagellar biosynthesis protein FlhF [Deferribacter desulfuricans
           SSM1]
 gi|290753532|dbj|BAI79909.1| flagellar biosynthesis protein FlhF [Deferribacter desulfuricans
           SSM1]
          Length = 386

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 21/241 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSK---PFNWDF--SHRPHVILVVGVN 120
           V++L+  ++ K V  +RV  D +   ++K+L+ L     P   D+  S +  V+ ++G  
Sbjct: 138 VDDLIAYKFLKKVE-KRVSTDFNRAQLNKLLVQLLSELIPIEKDYFSSLKQKVVAMIGPT 196

Query: 121 GVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           GVGKTT I K++  +S     KV L   DTFR  A++QL+ +AD      +  ++ S+  
Sbjct: 197 GVGKTTTIAKIAATLSLKLQKKVALITIDTFRIGAVEQLRTYADIVD---IPLKVASNPE 253

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            L  +    A+    D + +D+ GR   +   +  + K + V   + P      + VL  
Sbjct: 254 ELKSQI---AELSGFDYIFLDSMGRSQFDDSQIRELAKYMEVSPVITP------VLVLSM 304

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298
           ++    L      + +     LI TK+D T R G L+ + V  KIP+  L  G+ +  D+
Sbjct: 305 SSNHAELYDTFDRYRLLKPEYLIFTKLDETRRFGPLLNLPVLKKIPLLLLSTGQNVPEDI 364

Query: 299 E 299
           E
Sbjct: 365 E 365


>gi|153953793|ref|YP_001394558.1| flagellar biosynthesis regulator FlhF [Clostridium kluyveri DSM
           555]
 gi|219854409|ref|YP_002471531.1| hypothetical protein CKR_1066 [Clostridium kluyveri NBRC 12016]
 gi|146346674|gb|EDK33210.1| FlhF [Clostridium kluyveri DSM 555]
 gi|219568133|dbj|BAH06117.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 397

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 15/192 (7%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           D     HV+++VG  GVGKTT I KL+ K+      KV L   DT+R  A++QL+ +AD 
Sbjct: 196 DNKELEHVVVLVGPTGVGKTTTIAKLAGKLVLIEKKKVGLITIDTYRIGAVEQLRTYADI 255

Query: 165 TSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
            +  F V   +   A A+          K  D+++IDT GR   N + ++ +   I    
Sbjct: 256 MNIPFQVIFSMKDMAKAI-------DNMKSCDIILIDTTGRSSKNEMQISELRAFI---- 304

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             D     +V  V+  TT    +  +   +     + +I+TK+D T+  G ++ I+   K
Sbjct: 305 --DKVQTSNVHLVISCTTKNKDIDVIVNGYKKLNYSDIIITKLDETSTYGSILNILQLAK 362

Query: 284 IPVYFLGVGEGI 295
            P+ F+  G+ +
Sbjct: 363 KPISFVTTGQNV 374


>gi|237666591|ref|ZP_04526576.1| flagellar biosynthetic protein FlhF [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|237657790|gb|EEP55345.1| flagellar biosynthesis protein FlhF [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 434

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 23/222 (10%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +DVS   +L D+ E   + ++  +K  N         ++++G  GVGKTT I KL+ +++
Sbjct: 214 EDVSETEILRDIFE---RDILVTNKGLNGK-------VVLIGPTGVGKTTTIAKLAGRLA 263

Query: 137 -DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                KV L   DT+R  AI+QLK +A+  +  F    I       A E+ +       D
Sbjct: 264 LVEKKKVGLITIDTYRIGAIEQLKTYAEIMNIPFKVV-ITIKEMENAIESMEDC-----D 317

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V++IDT GR   N++ ++ +   ++         P  V  V+ ATT    ++ +   ++ 
Sbjct: 318 VVLIDTTGRSSKNTMQISELRAFVQ------KANPDHVNMVISATTKNKDIKGILKGYSE 371

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            G   +I+TK+D T   G +  I      P+ F+ +G+ + D
Sbjct: 372 LGYESVIVTKLDETTAYGSIYNISRNSNKPISFITIGQNVPD 413


>gi|71913237|gb|AAZ53359.1| signal recognition particle-docking protein [Flavobacterium
           psychrophilum]
          Length = 74

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 45/68 (66%)

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGINDL
Sbjct: 1   GSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGINDL 60

Query: 299 EPFVAKDF 306
           + F   +F
Sbjct: 61  QVFNKYEF 68


>gi|125973007|ref|YP_001036917.1| GTP-binding signal recognition particle [Clostridium thermocellum
           ATCC 27405]
 gi|256004804|ref|ZP_05429779.1| GTP-binding signal recognition particle SRP54 G- domain
           [Clostridium thermocellum DSM 2360]
 gi|281417218|ref|ZP_06248238.1| flagellar biosynthetic protein FlhF [Clostridium thermocellum JW20]
 gi|125713232|gb|ABN51724.1| GTP-binding signal recognition particle SRP54, G-domain
           [Clostridium thermocellum ATCC 27405]
 gi|255991254|gb|EEU01361.1| GTP-binding signal recognition particle SRP54 G- domain
           [Clostridium thermocellum DSM 2360]
 gi|281408620|gb|EFB38878.1| flagellar biosynthetic protein FlhF [Clostridium thermocellum JW20]
 gi|316940757|gb|ADU74791.1| flagellar biosynthetic protein FlhF [Clostridium thermocellum DSM
           1313]
          Length = 403

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 119/257 (46%), Gaps = 29/257 (11%)

Query: 51  DLLIRSDIGVAVAQKIVEELLT---KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           DL   + +   V  +IV++L++    +  ++VSV      +  LI +M+    KP +   
Sbjct: 147 DLFYNNLLKNEVDTEIVKQLISVVRGKVKENVSVSETASILYNLISEMM---GKPSDIKL 203

Query: 108 SH--RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD- 163
            +  +P V+++VG  GVGKTT + K++   S +    V L   DT+R AA++QLK +AD 
Sbjct: 204 RNDGKPTVVMLVGPTGVGKTTTLAKIAANYSLNLNKNVGLITADTYRIAAVEQLKTYADI 263

Query: 164 ---RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                   +  +EI         +A K+   K  D+++IDTAGR + N      +  ++ 
Sbjct: 264 LGMPLKVIYSANEIQ--------DAIKEYSDK--DLILIDTAGRSYKNKEHFDELKTLVE 313

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V           +  VL  TTG    R++   ++      LI TK+D ++  G ++    
Sbjct: 314 VTN------ADEIYLVLSTTTGMRNCREIIEHYSFLENYKLIFTKLDESSALGLILNSRR 367

Query: 281 THKIPVYFLGVGEGIND 297
                + F+  G+ + D
Sbjct: 368 LTNRDLSFVTTGQSVPD 384


>gi|182418485|ref|ZP_02949779.1| flagellar biosynthesis protein FlhF [Clostridium butyricum 5521]
 gi|182377867|gb|EDT75411.1| flagellar biosynthesis protein FlhF [Clostridium butyricum 5521]
          Length = 448

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 23/222 (10%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +DVS   +L D+ E   + ++  +K  N         ++++G  GVGKTT I KL+ +++
Sbjct: 228 EDVSETEILRDIFE---RDILVTNKGLNGK-------VVLIGPTGVGKTTTIAKLAGRLA 277

Query: 137 -DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                KV L   DT+R  AI+QLK +A+  +  F    I       A E+ +       D
Sbjct: 278 LVEKKKVGLITIDTYRIGAIEQLKTYAEIMNIPFKVV-ITIKEMENAIESMEDC-----D 331

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V++IDT GR   N++ ++ +   ++         P  V  V+ ATT    ++ +   ++ 
Sbjct: 332 VVLIDTTGRSSKNTMQISELRAFVQ------KANPDHVNMVISATTKNKDIKGILKGYSE 385

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            G   +I+TK+D T   G +  I      P+ F+ +G+ + D
Sbjct: 386 LGYESVIVTKLDETTAYGSIYNISRNSNKPISFITIGQNVPD 427


>gi|89098623|ref|ZP_01171505.1| flagellar biosynthesis regulator FlhF [Bacillus sp. NRRL B-14911]
 gi|89086585|gb|EAR65704.1| flagellar biosynthesis regulator FlhF [Bacillus sp. NRRL B-14911]
          Length = 381

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 22/275 (8%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +++++ L   ++  ++ ++++E+LL K Y  D+        ++  + ++L    +   + 
Sbjct: 123 KKVQEELAGQEVEPSIIEELMEKLLVKWYKSDLEPD--FNKINSWLRELLTAKLETAQYG 180

Query: 107 ---FSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
              F H+  +I  VG  GVGKTT + K++ + +     K      DT+R AAIDQLK +A
Sbjct: 181 GIAFDHK--IINFVGPTGVGKTTTLAKIAAECVIKQKKKTAFITTDTYRIAAIDQLKTYA 238

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D             D  A A + FK       +V++IDTAGR   N        K ++ L
Sbjct: 239 DILDVPMEVCYTEEDFKA-AVDTFKD-----FEVILIDTAGRNFRNP-------KYVQEL 285

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           K L          VL  T+ Q  + +     +V      I TK D T+  G L+ I+   
Sbjct: 286 KSLLEAESSQTYLVLSLTSKQRDMEETIKQFSVVDINRFIFTKADETSTFGPLLNIIDKT 345

Query: 283 KIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDY 316
                +L  G+ + +DL P   K  +  I G   Y
Sbjct: 346 GKGAAYLTTGQNVPDDLVPAGPKTIAGAIMGESKY 380


>gi|325288794|ref|YP_004264975.1| flagellar biosynthetic protein FlhF [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964195|gb|ADY54974.1| flagellar biosynthetic protein FlhF [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 396

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 17/203 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           V+ ++G  GVGKTT IGKL+   S     KV L   DT+R AA++QL+ + +      V 
Sbjct: 206 VVALIGPTGVGKTTTIGKLAAGFSIIDRRKVALVTADTYRVAAVEQLRTFGEIIG---VP 262

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            EI      L  EA K+   K  +++ IDTAGR  ++   M+ + K       L+  +P 
Sbjct: 263 VEIAMTPDDLQ-EAIKRHSDK--ELVFIDTAGRSPHHEAHMSELQKF------LEKASPD 313

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAG-TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             + V+  TT  NA  Q ++       +T LI+TK+D +   G ++ +V    +P+ +L 
Sbjct: 314 LTMLVMSVTT--NADDQAKVLEKFKKYSTHLILTKLDESTHLGSILDLVTKTPLPIAYLT 371

Query: 291 VGEGI-NDLEPFVAKDFSAVITG 312
            G+ + +D+E    +  +  I G
Sbjct: 372 NGQNVPDDIEAATPEKLAQSILG 394


>gi|212639546|ref|YP_002316066.1| flagellar biosynthesis regulator FlhF [Anoxybacillus flavithermus
           WK1]
 gi|212561026|gb|ACJ34081.1| Flagellar GTP-binding protein FlhF [Anoxybacillus flavithermus WK1]
          Length = 368

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 30/254 (11%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHK-MLMPLSKPFNWDFSHR 110
           LI  +I   V   ++  LL + Y    S +   YD V + +H+ ++  LS       S +
Sbjct: 116 LIDQEISDDVRAMLMSTLLQRWYT---SEKNATYDEVKQWLHEEIVRALSSLSFGGISFQ 172

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK----VMLAAGDTFRSAAIDQLKIWADRTS 166
              I VVG  GVGKTT + K++   +D  +K    V     DT+R AAIDQLK +A   +
Sbjct: 173 KKFINVVGPTGVGKTTTLAKMA---ADCVIKHRKKVAFITTDTYRIAAIDQLKTYAKILN 229

Query: 167 ADF-VCSEIGSDAAALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
               VC  +         + F++A+ K    D++ IDTAGR   N+  +  + +MI    
Sbjct: 230 VPLEVCYNL---------DDFRKAKEKLASYDIVFIDTAGRNFRNAQYVNDLKEMI---- 276

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             D +       VL  T     ++ +    ++      I TK+D T+R G ++ +++  +
Sbjct: 277 --DFNEEMETFLVLSLTAKWRDMKDIYTQFSLIPIHKFIFTKVDETSRHGAMLNMMIQCR 334

Query: 284 IPVYFLGVGEGIND 297
           I   ++  G+ + D
Sbjct: 335 IGAAYMTHGQNVPD 348


>gi|218288315|ref|ZP_03492614.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241674|gb|EED08847.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 381

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 13/187 (6%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            V+  VG  GVGKTT I K++     AG + V L   DTFR AA++QLK +AD  +    
Sbjct: 186 RVVAFVGPTGVGKTTTIAKIAALHVLAGQRRVGLLTTDTFRIAAVEQLKTYADILNVPIA 245

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++   DA++        A  +  D++++DTAGR   N +  A I +  R+L  ++  A 
Sbjct: 246 IADQPEDASS------ALASLQSCDLVLVDTAGR---NFLNPASIEQTKRMLTPIE--AD 294

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V  AT   +AL+   M   ++     I TK+D T   G +  +V   ++P+ ++ 
Sbjct: 295 EVLLVVSLATKPTDALKVANMAKPLS-VDKFIFTKLDETESVGMIPSLVALCQLPIAYVT 353

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 354 TGQNVPD 360


>gi|150019064|ref|YP_001311318.1| flagellar biosynthesis regulator FlhF [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905529|gb|ABR36362.1| GTP-binding signal recognition particle SRP54, G- domain
           [Clostridium beijerinckii NCIMB 8052]
          Length = 446

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 17/187 (9%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +++VG  GVGKTT I KL+ +++     KV L   DT+R  AI+QLK +A+  +  F   
Sbjct: 253 VVLVGPTGVGKTTTIAKLAGRLALIEKKKVGLITVDTYRIGAIEQLKTYAEIMNIPF--- 309

Query: 173 EIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                   +  +  + A  +    DV++IDT GR   N++ ++ +   ++         P
Sbjct: 310 -----KVVITMKEMEDAIEEMNNCDVVLIDTTGRSSKNAMQISELRAFVQ------KANP 358

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V  V+ ATT  + ++ +   ++      +I+TK+D T   G L  I      PV F+ 
Sbjct: 359 DHVNMVISATTKNSDIKSILSGYSELEYDNIIITKLDETTVYGSLYNIAKIANKPVSFIT 418

Query: 291 VGEGIND 297
           +G+ + D
Sbjct: 419 IGQNVPD 425


>gi|170754532|ref|YP_001782261.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum B1
           str. Okra]
 gi|169119744|gb|ACA43580.1| flagellar biosynthesis protein FlhF [Clostridium botulinum B1 str.
           Okra]
          Length = 408

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 19/190 (10%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            V ++VG  GVGKTT I KL+ K+S  D   KV L   DT+R  A++QLK +AD  +  F
Sbjct: 213 KVTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPF 271

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V S    + A +  +          DV+++DT GR   N + ++ +   I  +K    
Sbjct: 272 KVVFSMRDMEKAIIDLDY--------CDVILVDTTGRSSKNMMQISELRAFIEKIK---- 319

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
               SV  V+ A+T    +  +   +++     +I+TK+D T+  G ++ I+   K P+ 
Sbjct: 320 --EKSVHLVISASTKNKDIETIVKGYSILEYENIIITKLDETSIYGSILTILDKGKKPIS 377

Query: 288 FLGVGEGIND 297
           F+  G+ + D
Sbjct: 378 FITTGQDVPD 387


>gi|289759036|ref|ZP_06518414.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           T85]
 gi|289714600|gb|EFD78612.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           T85]
          Length = 349

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 63/124 (50%), Gaps = 6/124 (4%)

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DV+I+DTAGRL  +  LMA     IR     D   P  VL VLDA  GQ+A+     
Sbjct: 12  KHFDVVIVDTAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQDAVTTAAA 65

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F     ++ I 
Sbjct: 66  FGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRIL 125

Query: 312 GCLD 315
           G  D
Sbjct: 126 GMGD 129


>gi|215447178|ref|ZP_03433930.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           T85]
          Length = 350

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 63/124 (50%), Gaps = 6/124 (4%)

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DV+I+DTAGRL  +  LMA     IR     D   P  VL VLDA  GQ+A+     
Sbjct: 13  KHFDVVIVDTAGRLGIDEELMA-QAAAIR-----DAINPDEVLFVLDAMIGQDAVTTAAA 66

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F     ++ I 
Sbjct: 67  FGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRIL 126

Query: 312 GCLD 315
           G  D
Sbjct: 127 GMGD 130


>gi|319790428|ref|YP_004152061.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermovibrio ammonificans HB-1]
 gi|317114930|gb|ADU97420.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermovibrio ammonificans HB-1]
          Length = 383

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 19/206 (9%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S  P +I  +G  GVGKTT + K++ K   +  LKV +   DTF+  A+ Q +++A   +
Sbjct: 186 SGEPKLIAFLGPTGVGKTTNLFKVASKFVIEQDLKVGVITTDTFKVGAVQQARVYASILN 245

Query: 167 ADFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
             F    + +D      + FK+  A  + +DV++IDT GR H +      +G++  +L  
Sbjct: 246 VPFF---VATDQ-----KKFKEILASVENLDVVLIDTVGRSHYD---YWRLGEIKAILSG 294

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                 +++L   +  T + AL  V+ +      + L  TK+D ++R G ++ +    ++
Sbjct: 295 ASLPIEYTLLISCNYDT-KEALEVVKRYRGFFPVSSLFFTKVDESSRPGVMVNVPYYTEL 353

Query: 285 PVYFLGVG----EGINDLEPFVAKDF 306
           P+ +L  G    E I  L P V  D+
Sbjct: 354 PLAYLSTGQRVPEDIKLLTPEVVTDY 379


>gi|157363485|ref|YP_001470252.1| flagellar biosynthesis regulator FlhF [Thermotoga lettingae TMO]
 gi|157314089|gb|ABV33188.1| GTP-binding signal recognition particle SRP54 G- domain [Thermotoga
           lettingae TMO]
          Length = 367

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 15/184 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +L VG  GVGKTT + K++ K+     K V +   DT+R AA +QLK +A          
Sbjct: 170 VLFVGPTGVGKTTTLAKIAAKLKLIHKKQVAILTLDTYRIAATEQLKTYA-------AIM 222

Query: 173 EIGSDAAALAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +I    A    EA  +  A    DV++IDTAGR  NN I M+ +  ++  +       P 
Sbjct: 223 DIPMRVAYTPKEAKLELDAMHDFDVILIDTAGRSQNNDIQMSELRALVETI------TPS 276

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
               V+      + L+ +     VA  T  I+TKMD T   G +I I     IP+ ++  
Sbjct: 277 VCFLVVGMNCKYSDLKDIVKKFDVAKYTHTILTKMDETRSYGHIINISQLSGIPLAYITN 336

Query: 292 GEGI 295
           G+ +
Sbjct: 337 GQRV 340


>gi|77918765|ref|YP_356580.1| flagellar GTP-binding protein [Pelobacter carbinolicus DSM 2380]
 gi|77544848|gb|ABA88410.1| flagellar GTP-binding protein [Pelobacter carbinolicus DSM 2380]
          Length = 419

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 21/210 (10%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
             R   I +VG  GVGKTT I K++ K++ +   +V L   DT+R AA++QLK++ +  +
Sbjct: 219 PRRQKRIALVGPTGVGKTTTIAKMAAKQLLNGTGRVALVTIDTYRIAAVEQLKVYGEIMN 278

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +  E+ +    L ++A  + Q K  ++++IDTAGR   + + +A +   +       
Sbjct: 279 ---LPVEVVTTPEQL-HQALARHQDK--ELILIDTAGRSPRDDMSIAELAAFLG------ 326

Query: 227 PHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
             A    L VL ATT    L + V+ F  +     L+ TK+D   + G L+ I +T ++P
Sbjct: 327 -KAETENLLVLSATTRDRELTEAVQRFSRIP-LHSLVFTKLDECEQCGTLLNISLTQQLP 384

Query: 286 VYFLGVGEGINDLEPFVAKDFSAV---ITG 312
           + FL  G+ +   E  V  D  A+   ITG
Sbjct: 385 LSFLTNGQRVP--EDLVEADTEAITGFITG 412


>gi|260893859|ref|YP_003239956.1| flagellar biosynthetic protein FlhF [Ammonifex degensii KC4]
 gi|260866000|gb|ACX53106.1| flagellar biosynthetic protein FlhF [Ammonifex degensii KC4]
          Length = 350

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 14/188 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            V  +VG  GVGKTT + KL+ ++S     +V+L   DT+R  A++QL+ +A+     F 
Sbjct: 147 RVFALVGPTGVGKTTTLAKLAARLSLYQHRRVVLVTIDTYRIGAVEQLRTYAEVMGVPFG 206

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +   ++  A+  E + +A     D  ++DT GR       +A + + + VL      +P
Sbjct: 207 VAMTPAELRAI-LERYPEA-----DHFLVDTVGRPGRRWEEIAELQEFLAVLP-----SP 255

Query: 231 HSVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             V  VL   T  ++ +R  E F  + G   LI TK+D T   G ++ +V   K+P  ++
Sbjct: 256 RDVGLVLSLNTRYRDLVRTAEAFREL-GPNLLIFTKLDETDSWGPMLNLVYRLKLPALYV 314

Query: 290 GVGEGIND 297
             G+ + D
Sbjct: 315 TTGQSVPD 322


>gi|291519575|emb|CBK74796.1| Flagellar GTP-binding protein [Butyrivibrio fibrisolvens 16/4]
          Length = 283

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 91/207 (43%), Gaps = 7/207 (3%)

Query: 93  HKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTF 150
            KM++ L  P        RP V+  +G  GVGKTT I K++ K   + G KV L   DTF
Sbjct: 64  QKMVLKLGTPTKIVPGEKRPKVVFFIGPTGVGKTTTIAKIASKFKVEEGKKVGLITADTF 123

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AA +QL+ +A+        + I S    L     +  + + +DV+++DT G  H N  
Sbjct: 124 RMAAANQLQTYANILGVPL--NVIYSADELLDTVKRQNREYQDLDVILVDTIGFSHKNQD 181

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
                 K+I  L  +       V  VL ATT Q  L  +   +       LI TK+D T 
Sbjct: 182 QKNDTKKLITALGDI---YDSEVYLVLSATTKQKDLMDIADAYMEFTKFNLIFTKLDETK 238

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGIND 297
             G L  +       + ++  G+ + D
Sbjct: 239 CLGNLFNMKQYTGSSLSYITTGQNVPD 265


>gi|221133142|ref|XP_002171139.1| PREDICTED: similar to F21D5.7, partial [Hydra magnipapillata]
          Length = 259

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 6/120 (5%)

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+I+DTAGRL  + ++M  + ++ + +       P  +L V+D+ TGQ+A+   + F+  
Sbjct: 5   VVIVDTAGRLAVDEVMMKEVEEIKKAI------TPSEILFVVDSMTGQDAVNTAKTFNER 58

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               G+++TK+DG +RGG  + I      P+ F+  GE ++ L+ F     ++ I G  D
Sbjct: 59  LDFDGVVLTKLDGDSRGGAALSIKAVVNKPIKFISTGEKMDALDIFYPDRMASRILGMGD 118


>gi|242309560|ref|ZP_04808715.1| flagellar biosynthesis regulator FlhF [Helicobacter pullorum MIT
           98-5489]
 gi|239524131|gb|EEQ63997.1| flagellar biosynthesis regulator FlhF [Helicobacter pullorum MIT
           98-5489]
          Length = 404

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 22/195 (11%)

Query: 112 HVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT--S 166
           +++++VG  GVGKTT + KL+    +M +   KV +   DT+R  A+DQL  +A +   S
Sbjct: 205 NIMMLVGPTGVGKTTTLAKLAARYSRMLNKNYKVGIITLDTYRIGAVDQLMFYAKKMKLS 264

Query: 167 ADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            D V             E F  A    K  D ++IDT G   ++   +  +   +     
Sbjct: 265 IDTVVDT----------EEFINALDSLKYCDYILIDTVGSSQHDRAKLESLKNFVNA--- 311

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            DP+    V  V+ ATT    L+ +    +  G   LI TK+D T   G +  ++   K 
Sbjct: 312 -DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTLIFTKLDETHSYGNIFSLIYETKK 370

Query: 285 PVYFLGVGEGI-NDL 298
              +  +G+ + NDL
Sbjct: 371 ATSYFSIGQEVPNDL 385


>gi|331269332|ref|YP_004395824.1| flagellar biosynthesis protein flhF [Clostridium botulinum
           BKT015925]
 gi|329125882|gb|AEB75827.1| flagellar biosynthesis protein flhF [Clostridium botulinum
           BKT015925]
          Length = 381

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 18/204 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169
           ++++VG  GVGKTT I KL+ K++  D   KV L   DT+R  AI+QL  +A+  S  F 
Sbjct: 187 IVVLVGPTGVGKTTTIAKLAGKLALIDKK-KVGLITVDTYRIGAIEQLSTYANIMSIPFE 245

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
               I    AAL        + K  DV+++DT GR   N + +A +   ++         
Sbjct: 246 SVFSIKEMEAAL-------DRMKDCDVILVDTTGRSSKNIMQIAELNAFVQ------KTN 292

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             ++  V+ ATT    +  +   +       +I+TK+D T   G ++ I+     P+ F+
Sbjct: 293 TENIYLVISATTKDKDVESIVEGYKTLNYANVIITKLDETTTYGSILNILSNANKPLSFV 352

Query: 290 GVGEGI-NDLEPFVAKDFSAVITG 312
             G+ + +D +   +++ + ++ G
Sbjct: 353 TTGQNVPDDFKKITSEEIARLVLG 376


>gi|322806974|emb|CBZ04544.1| flagellar biosynthesis protein FlhF [Clostridium botulinum H04402
           065]
          Length = 408

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 17/189 (8%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            V ++VG  GVGKTT I KL+ K+S  D   KV L   DT+R  A++QLK +AD  +  F
Sbjct: 213 KVTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPF 271

Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V   I     A+    +        DV+++DT GR   N + ++ +   I  +K     
Sbjct: 272 KVVFSIKDMEKAIIDLDY-------CDVILVDTTGRSSKNMMQISELRAFIEKIK----- 319

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
              SV  V+ A+T    +  +   +++     +I+TK+D T+  G ++ I+   K P+ F
Sbjct: 320 -EKSVHLVISASTKNKDIETIVKGYSILEYENIIITKLDETSIYGSILTILDKGKNPISF 378

Query: 289 LGVGEGIND 297
           +  G+ + D
Sbjct: 379 ITTGQDVPD 387


>gi|170759882|ref|YP_001787965.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum A3
           str. Loch Maree]
 gi|169406871|gb|ACA55282.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 408

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 17/189 (8%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            V ++VG  GVGKTT I KL+ K+S  D   KV L   DT+R  A++QLK +AD  +  F
Sbjct: 213 KVTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPF 271

Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V   I     A+    +        DV+++DT GR   N + ++ +   I  +K     
Sbjct: 272 KVVFSIKDMEKAIVDLDY-------CDVILVDTTGRSSKNMMQISELRAFIEKIK----- 319

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
              SV  V+ A+T    +  +   +++     +I+TK+D T+  G ++ I+   K P+ F
Sbjct: 320 -EKSVHLVISASTKNKDIETIIKGYSILEYENIIITKLDETSIYGSVLTILDKGKKPISF 378

Query: 289 LGVGEGIND 297
           +  G+ + D
Sbjct: 379 ITTGQDVPD 387


>gi|218513807|ref|ZP_03510647.1| cell division protein [Rhizobium etli 8C-3]
          Length = 269

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 4   QKVASES-LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           Q +A +  LSW ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+GV  
Sbjct: 135 QPIAPQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVET 194

Query: 63  AQKIVEELLTKRYAKDVSVQRV 84
           A ++ + L ++RY KDV+ + V
Sbjct: 195 ALRVTDTLASERYGKDVTGEDV 216


>gi|153939997|ref|YP_001391945.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum F str.
           Langeland]
 gi|152935893|gb|ABS41391.1| flagellar biosynthesis protein FlhF [Clostridium botulinum F str.
           Langeland]
          Length = 408

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 17/188 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169
           V ++VG  GVGKTT I KL+ K+S  D   KV L   DT+R  A++QLK +AD  +  F 
Sbjct: 214 VTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPFK 272

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V   I     A+    +        DV+++DT GR   N + ++ +   I  +K      
Sbjct: 273 VVFSIKDMEKAIIDLDY-------CDVILVDTTGRSSKNMMQISELRAFIEKIK------ 319

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             SV  V+ A+T    +  +   +++     +I+TK+D T+  G ++ I+   K P+ F+
Sbjct: 320 EKSVHLVISASTKNKDIETIIKGYSILEYENIIITKLDETSIYGSILTILDKGKKPISFI 379

Query: 290 GVGEGIND 297
             G+ + D
Sbjct: 380 TTGQDVPD 387


>gi|291277486|ref|YP_003517258.1| flagellar biosynthesis protein [Helicobacter mustelae 12198]
 gi|290964680|emb|CBG40535.1| flagellar biosynthesis protein [Helicobacter mustelae 12198]
          Length = 447

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 111/223 (49%), Gaps = 27/223 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-- 136
           V+++R      E++ KML   ++  N D S +  +I+++G  GVGKTT + KL+ + S  
Sbjct: 218 VTIKRYF---REILRKMLYCRNE--NLDMSSK-KIIMLIGPTGVGKTTTLAKLAARYSRL 271

Query: 137 -DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA-KKV 194
            D   +V +   DT+R  A+DQL  +A +        +I  +      +  ++  A +  
Sbjct: 272 LDHKYRVGIITLDTYRIGALDQLTWYARKM-------KISIETVIEPEDFLREIDALRYC 324

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+++DTAG   ++   +  + + ++   ++D      V  VL ATT    L+  +++HA
Sbjct: 325 DVILVDTAGHSQHDKQKIQQLRRFVQNDYKID------VSLVLSATTKFGDLK--DIYHA 376

Query: 255 VA--GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            +  G    + +K+D +   G L  +    K P+ +L +G+ +
Sbjct: 377 FSDLGVDSFVFSKLDESRGLGNLFSLAYETKKPISYLSIGQEV 419


>gi|15895415|ref|NP_348764.1| flagellar biosynthesis regulator FlhF [Clostridium acetobutylicum
           ATCC 824]
 gi|15025138|gb|AAK80104.1|AE007715_9 Flagellar GTP-binding protein, FlhF [Clostridium acetobutylicum
           ATCC 824]
 gi|325509561|gb|ADZ21197.1| flagellar biosynthesis regulator FlhF [Clostridium acetobutylicum
           EA 2018]
          Length = 389

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 116/267 (43%), Gaps = 33/267 (12%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           ISS   D   + E+E  L  +DI     ++IV+ ++  +   D+++            K+
Sbjct: 130 ISSSNADQEEKSEIELKLEEADINEGYIKEIVKNIMDDKSDIDLNL------------KL 177

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAA 154
              L K      +    +I  VG  GVGKTT I KL+ K S     KV L   DT+R  A
Sbjct: 178 KSALEKNIEISKTEEKGIITFVGPTGVGKTTTIAKLAGKFSLIEKKKVGLITVDTYRIGA 237

Query: 155 IDQLKIWADRTSADF----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           ++QL+ +AD  +  F       E+         EA K  Q    D++++DT GR   N +
Sbjct: 238 VEQLRTYADIMNLPFKVVLTLKEMD--------EAIKSMQ--NCDIILVDTTGRSSKNKM 287

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
            ++ +   +     L+ +       V+ ATT    L  +   +       +I+TK+D T 
Sbjct: 288 QISELRAFVSKTNSLNINL------VISATTKNRDLEAIIDGYRQLDFQNVIITKLDETT 341

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGIND 297
             G +I I+     P+ ++  G+ + D
Sbjct: 342 TYGSIINILNYAHKPLSYVTTGQNVPD 368


>gi|328479900|gb|EGF48970.1| signal recognition particle-docking protein FtsY [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 81

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 50/76 (65%)

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL VLDATTGQNAL Q + F+     TG+++TK+DG+ +GG ++ I     +PV  +G+G
Sbjct: 1   VLLVLDATTGQNALNQAKEFNQTTQITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLG 60

Query: 293 EGINDLEPFVAKDFSA 308
           E ++DL+ F    F A
Sbjct: 61  EKMDDLQAFDPTKFVA 76


>gi|225619296|ref|YP_002720522.1| flagellar biosynthesis regulator FlhF [Brachyspira hyodysenteriae
           WA1]
 gi|225214115|gb|ACN82849.1| flagellar biosynthesis regulator FlhF [Brachyspira hyodysenteriae
           WA1]
          Length = 679

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 18/190 (9%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +  +I+ VG  GVGKTT I K++ +   +G KV     D +R AA+DQL+ +A      F
Sbjct: 483 KKKIIVFVGPTGVGKTTTIPKIAAQYLKSGKKVSFVTIDNYRIAAVDQLQRYASIMKVPF 542

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVD---VLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 S   AL      +A+ +K+D   +L IDT GR    +  +  + K    + R D
Sbjct: 543 TS---ASTPEAL------RAEIRKMDNSSLLFIDTMGRSPKGAEDIVAMSKYFTTVGRFD 593

Query: 227 PHAPHSVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                 +  V+ AT   ++AL+ +  F       G+I+TK+D T      I  +   K+P
Sbjct: 594 ----MDIQLVMSATAKYKDALKILNGFKPT-NYKGVILTKVDETDYLASSICAITKKKLP 648

Query: 286 VYFLGVGEGI 295
           + ++  G+G+
Sbjct: 649 ITYITHGQGV 658


>gi|52080243|ref|YP_079034.1| flagellar biosynthesis regulator FlhF [Bacillus licheniformis ATCC
           14580]
 gi|52785620|ref|YP_091449.1| flagellar biosynthesis regulator FlhF [Bacillus licheniformis ATCC
           14580]
 gi|319645978|ref|ZP_08000208.1| FlhF protein [Bacillus sp. BT1B_CT2]
 gi|52003454|gb|AAU23396.1| flagella-associated protein [Bacillus licheniformis ATCC 14580]
 gi|52348122|gb|AAU40756.1| FlhF [Bacillus licheniformis ATCC 14580]
 gi|317391728|gb|EFV72525.1| FlhF protein [Bacillus sp. BT1B_CT2]
          Length = 370

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 25/212 (11%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           H  +V+L  G  GVGKTT + KL+   + +   K+     DT+R AA++QL+ +A+  +A
Sbjct: 177 HSQYVVLF-GSTGVGKTTTLAKLAASSVLEKQKKIAFITTDTYRIAAVEQLRTYAELLNA 235

Query: 168 DF-VCSEIGSDAAALAYEAFKQAQAKKVDV--LIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              VC            E FK AQ K  D   + IDTAGR   +       G+ +R LK 
Sbjct: 236 PLEVC---------YTKEEFKAAQQKFADFDHVFIDTAGRNFKD-------GQYVRELKE 279

Query: 225 LDPHAPH-SVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           + P         V+ AT+    +++ ++ F ++     LI TK+D T   G ++ ++   
Sbjct: 280 IIPFERKIQAFLVMSATSKYEDMKELIKQFSSIP-IDQLIFTKVDETDSLGSVMNLLAES 338

Query: 283 KIPVYFLGVGEGI-NDLEPFVAKDFSAVITGC 313
           +I + ++  G+ +  D+       F  ++TGC
Sbjct: 339 RIGLGYITNGQNVPEDIRYLSNAAFVRLLTGC 370


>gi|148380602|ref|YP_001255143.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933547|ref|YP_001384889.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935713|ref|YP_001388358.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum A str.
           Hall]
 gi|148290086|emb|CAL84205.1| putative flagellar biosynthesis protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929591|gb|ABS35091.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931627|gb|ABS37126.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A str.
           Hall]
          Length = 408

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 17/189 (8%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            V ++VG  GVGKTT I KL+ K+S  D   KV L   DT+R  A++QLK +AD  +  F
Sbjct: 213 KVTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPF 271

Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V   I     A+    +        DV+++DT GR   N + ++ +   I  +K     
Sbjct: 272 KVVFSIKDMEKAIIDLDY-------CDVILVDTTGRSSKNMMQISELRAFIEKIK----- 319

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
              SV  V+ A+T    +  +   +++     +I+TK+D T+  G ++ I+   K P+ F
Sbjct: 320 -EKSVHLVISASTKNKDIETIVKGYSILEYENIIITKLDETSIYGSILTILDKGKNPISF 378

Query: 289 LGVGEGIND 297
           +  G+ + D
Sbjct: 379 ITTGQDVPD 387


>gi|254519404|ref|ZP_05131460.1| flagellar biosynthesis regulator FlhF [Clostridium sp. 7_2_43FAA]
 gi|226913153|gb|EEH98354.1| flagellar biosynthesis regulator FlhF [Clostridium sp. 7_2_43FAA]
          Length = 383

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 135/275 (49%), Gaps = 29/275 (10%)

Query: 28  LKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
           +KE + +I  + +R + +  +EE +D+++     + +  ++++E+LT +Y    ++    
Sbjct: 112 IKEEVKEIKDLLNRVIKNTNKEEEKDIVLEYLKDIDIDDELIKEVLTDKYD---NIDEFK 168

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVML 144
               EL+   +   ++  +         +++VG  GVGKTT I KL+ +++     KV L
Sbjct: 169 TYFKELLENEIQVCTESLSGK-------VVLVGPTGVGKTTTIAKLAGRLALIEKKKVGL 221

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTA 202
              DT+R  A++QLK +A+  +  F           +  +  + A  + +  DV++IDT 
Sbjct: 222 ITIDTYRIGAVEQLKTYAEIMNIPF--------KVVITLKEMENAVSELEDCDVILIDTT 273

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GR   N++ ++ +    + +     +A H  L V+  TT    ++ +   ++  G   +I
Sbjct: 274 GRSSKNTMQISELRAFTQKV-----NADHIAL-VISGTTKNRDIQTIINGYSEIGYEKII 327

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           +TK+D T+  G +  I+   + P+ ++  G+ + D
Sbjct: 328 ITKLDETSSYGCIYNIIKKAQKPIAYITTGQNVPD 362


>gi|313672890|ref|YP_004051001.1| flagellar biosynthetic protein flhf [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939646|gb|ADR18838.1| flagellar biosynthetic protein FlhF [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 390

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 15/203 (7%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAA 154
           L+P+ K  ++  S R  V+ +VG  GVGKTT I K++  ++     KV L + DTFR  A
Sbjct: 178 LIPVEK--DYFSSIRQKVLALVGPTGVGKTTTIAKIAANLALKLQKKVCLISVDTFRIGA 235

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           ++QLK +++        +   +D   +        + K  D +++D+ GR   ++  ++ 
Sbjct: 236 VEQLKTYSEIIDVPLYVASNPADLDEII------GEVKHYDYILLDSMGRSQFDTEQISE 289

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K + V   +      SV  V+  ++    L  +   +A      +I TK+D T   G 
Sbjct: 290 LKKFMDVSPLI------SVALVMSMSSNHIELYDIYDRYARLMPNFVIFTKLDETRYFGP 343

Query: 275 LIPIVVTHKIPVYFLGVGEGIND 297
           L+ I +  KIP+  L  G+ + D
Sbjct: 344 LVNIPLIKKIPIMLLSTGQNVPD 366


>gi|257487159|ref|ZP_05641200.1| signal recognition particle protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 269

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 6/116 (5%)

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH +  +M  I  +    K      P   L V+DA TGQ+A    + F      T
Sbjct: 1   DTAGRLHVDVEMMGEIQALHAATK------PAETLFVVDAMTGQDAANTAKAFGDALPLT 54

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I G  D
Sbjct: 55  GVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRILGMGD 110


>gi|226950057|ref|YP_002805148.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A2 str.
           Kyoto]
 gi|226843456|gb|ACO86122.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A2 str.
           Kyoto]
          Length = 408

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 19/189 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169
           V ++VG  GVGKTT I KL+ K+S  D   KV L   DT+R  A++QLK +AD  +  F 
Sbjct: 214 VTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPFK 272

Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V S    + A +  +          DV+++DT GR   N + ++ +   I  +K     
Sbjct: 273 VVFSMKDMEKAIIDLDY--------CDVILVDTTGRSSKNMMQISELRAFIEKIK----- 319

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
              SV  V+ A+T    +  +   +++     +I+TK+D T+  G ++ ++   K P+ F
Sbjct: 320 -EKSVHLVISASTKNKDVETIIKGYSILEYENIIITKLDETSIYGSILTVLDKGKKPISF 378

Query: 289 LGVGEGIND 297
           +  G+ + D
Sbjct: 379 ITTGQDVPD 387


>gi|332297779|ref|YP_004439701.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Treponema brennaborense DSM 12168]
 gi|332180882|gb|AEE16570.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Treponema brennaborense DSM 12168]
          Length = 432

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 21/202 (10%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKM------SDAGLKVMLAAGDTFRSAAIDQLKI 160
           F  RP V+++VG  GVGKTT + KL+ +       +D  L + +   D FR AA +QL  
Sbjct: 191 FKRRPKVLILVGPTGVGKTTTVAKLAAQYRFQKGDNDERLSIRMVTIDRFRIAAQEQLAK 250

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           + +        +E   D   +         + K+DV++IDT G   ++      IG+M +
Sbjct: 251 YGEHMDIPTTAAESADDIRDIL-----AIHSGKLDVMLIDTIGYSPHD---YESIGRMRK 302

Query: 221 VL--KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +L    L P    +V     A+  ++ +R  E F   A    +I+TK D T   G ++ +
Sbjct: 303 ILDVPGLKPEVYLTVSAATKASDLRDIMRNYETFDYKA----VIVTKYDETNHIGNVLSV 358

Query: 279 VVTHKIPVYFLGVGEGI-NDLE 299
           +     PV ++  G+ +  D+E
Sbjct: 359 LAEKDKPVAYISTGQKVPRDIE 380


>gi|320538193|ref|ZP_08038088.1| SRP54-type protein, GTPase domain protein [Treponema phagedenis
           F0421]
 gi|320145010|gb|EFW36731.1| SRP54-type protein, GTPase domain protein [Treponema phagedenis
           F0421]
          Length = 439

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 20/191 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLS-------KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           I +VG  GVGKTT + KL+        K      +V +   D FR  A+  ++ + +   
Sbjct: 233 IALVGPTGVGKTTTLAKLAAFYFKFESKRKQKQQRVKVITTDFFRIGAVSHMERYCEVMG 292

Query: 167 ADFVCSEIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            DF C   G+D     + Y    Q +A   DV+ IDTAGR  N++  +    +     K 
Sbjct: 293 IDF-C---GADTIPTFVTYLTLYQNEA---DVVCIDTAGRAANDTNNIKKTVEYFEAAKN 345

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           +D      +   + A T  + LR++   + V   T LI+TK D T R G L+  +   KI
Sbjct: 346 ID----FEMYLTVAAGTKTSDLREIFQQYDVFNYTSLIITKFDETLRIGNLLSALKDIKI 401

Query: 285 PVYFLGVGEGI 295
           P+ ++  G+ +
Sbjct: 402 PISYITFGQTV 412


>gi|330944144|gb|EGH46267.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. pisi str. 1704B]
 gi|330980007|gb|EGH78273.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 77

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 44/66 (66%)

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  
Sbjct: 1   TGQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRT 60

Query: 301 FVAKDF 306
           F A+ F
Sbjct: 61  FEAEPF 66


>gi|150390464|ref|YP_001320513.1| GTP-binding signal recognition particle [Alkaliphilus
           metalliredigens QYMF]
 gi|149950326|gb|ABR48854.1| GTP-binding signal recognition particle SRP54, G- domain
           [Alkaliphilus metalliredigens QYMF]
          Length = 391

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 21/192 (10%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD- 168
           P +I  VG  GVGKTT I KL+   + + G  V L + DT+R AA++QL+ ++D  +   
Sbjct: 197 PQIIFFVGPTGVGKTTTIAKLAAHHALNEGQSVGLISADTYRIAAVEQLRTYSDILNIPL 256

Query: 169 ---FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
              +  SEI      L ++          D++ IDTAGR H N      I ++  +L+++
Sbjct: 257 EVVYKSSEINKAIDNLKHK----------DLIFIDTAGRSHKNK---EQILELETLLQQI 303

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           +      V  V+  TT    ++++   +       LI TK+D  +  G +I   +  + P
Sbjct: 304 E---CKEVYFVISCTTRTVDIKEMIKAYDFLKDYKLIFTKLDEASTFGTIINTAMFIQKP 360

Query: 286 VYFLGVGEGIND 297
           + ++  G+ + D
Sbjct: 361 LSYITTGQSVPD 372


>gi|168182728|ref|ZP_02617392.1| flagellar biosynthesis protein FlhF [Clostridium botulinum Bf]
 gi|182674220|gb|EDT86181.1| flagellar biosynthesis protein FlhF [Clostridium botulinum Bf]
          Length = 408

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 19/189 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169
           V ++VG  GVGKTT I KL+ K+S  D   KV L   DT+R  A++QLK +AD  +  F 
Sbjct: 214 VTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPFK 272

Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V S    + A +  +          DV+++DT GR   N + ++ +   I  +K     
Sbjct: 273 VVFSMKDMEKAIIDLDY--------CDVILVDTTGRSSKNMMQISELRAFIEKIK----- 319

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
              SV  V+ A+T    +  +   +++     +I+TK+D T+  G ++ ++   K P+ F
Sbjct: 320 -EKSVHLVISASTKNKDVETIIRGYSILEYENIIITKLDETSIYGSILTVLDKGKKPISF 378

Query: 289 LGVGEGIND 297
           +  G+ + D
Sbjct: 379 ITTGQDVPD 387


>gi|319957082|ref|YP_004168345.1| GTP-binding signal recognition particle srp54 g- domain protein
           [Nitratifractor salsuginis DSM 16511]
 gi|319419486|gb|ADV46596.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Nitratifractor salsuginis DSM 16511]
          Length = 353

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 96/211 (45%), Gaps = 20/211 (9%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           P V+++VG  GVGKTT I KL+ + S   D   KV L   DT+R+ A +QL  +A     
Sbjct: 154 PRVMMMVGPTGVGKTTTIAKLAARYSYLLDREYKVALINLDTWRAGAYEQLDNFARILHL 213

Query: 168 DFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKR 224
           +   +E          E F Q     K  DV+++DTAG   ++   L+    K I  LK 
Sbjct: 214 EHRRAE--------RIEEFAQHLDALKDYDVVLVDTAGISPYDTDRLI----KTIEFLKS 261

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           +      + L V+ AT     +R++            I+TK D T R G LI  +    +
Sbjct: 262 VQNREITTSL-VISATAKYEDIREIYEHFNFIRVDNAIVTKFDETQRVGDLIAFLTEKHL 320

Query: 285 PVYFLGVGEGI-NDLEPFVAKDFSAVITGCL 314
           PV ++  G+ + +DL P   +      TG L
Sbjct: 321 PVSYISTGQKVPDDLLPASKERILEAFTGEL 351


>gi|237796084|ref|YP_002863636.1| flagellar biosynthesis protein FlhF [Clostridium botulinum Ba4 str.
           657]
 gi|229260865|gb|ACQ51898.1| flagellar biosynthesis protein FlhF [Clostridium botulinum Ba4 str.
           657]
          Length = 408

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 19/189 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169
           V ++VG  GVGKTT I KL+ K+S  D   KV L   DT+R  A++QLK +AD  +  F 
Sbjct: 214 VTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPFK 272

Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V S    + A +  +          DV+++DT GR   N + ++ +   I  +K     
Sbjct: 273 VVFSMKDMEKAIIDLDY--------CDVILVDTTGRSSKNMMQISELRAFIEKIK----- 319

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
              SV  V+ A+T    +  +   +++     +I+TK+D T+  G ++ ++   K P+ F
Sbjct: 320 -EKSVHLVISASTKNKDVETIIRGYSILEYENIIITKLDETSIYGSILTVLDKGKKPISF 378

Query: 289 LGVGEGIND 297
           +  G+ + D
Sbjct: 379 ITTGQDVPD 387


>gi|302670741|ref|YP_003830701.1| flagellar biosynthesis protein FlhF [Butyrivibrio proteoclasticus
           B316]
 gi|302395214|gb|ADL34119.1| flagellar biosynthesis protein FlhF [Butyrivibrio proteoclasticus
           B316]
          Length = 422

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 10/188 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P   + +G  GVGKTT I KL+ ++S     KV L   DT+R AA +QL+ +A      F
Sbjct: 225 PRAEIFIGPTGVGKTTTIAKLASELSVTQKKKVALVTVDTYRIAAAEQLRTYASILEIPF 284

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D      E FK       D +++DTAG   +N  L + I   IR L+ L    
Sbjct: 285 RVI-YSVDEMKQVAEDFKD-----YDYIMVDTAGHSQHNDELKSDIEAYIRTLEDLMDCE 338

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
            + VL    ATT    L ++   ++      LI TKMD T   G +  + +    PV ++
Sbjct: 339 NYLVLS---ATTKYRDLIEIADSYSELVAYKLIFTKMDETGAKGNVYNMRMHTGAPVAYI 395

Query: 290 GVGEGIND 297
             G+ + D
Sbjct: 396 TNGQNVPD 403


>gi|153818948|ref|ZP_01971615.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           NCTC 8457]
 gi|126510510|gb|EAZ73104.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           NCTC 8457]
          Length = 266

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 1/133 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 81  SFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLT 140

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +     LY +  E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 141 ARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGK 200

Query: 131 LSKKMSDAGLKVM 143
           L+K+    G KVM
Sbjct: 201 LAKQFQAQGKKVM 213


>gi|258511393|ref|YP_003184827.1| flagellar biosynthetic protein FlhF [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478119|gb|ACV58438.1| flagellar biosynthetic protein FlhF [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 381

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 13/187 (6%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            V+  VG  GVGKTT I K++     AG + V L   DTFR AA++QLK +AD  +    
Sbjct: 186 RVVAFVGPTGVGKTTTIAKIAALHVLAGQRRVGLLTTDTFRIAAVEQLKTYADILNVPIA 245

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++   D ++        A  +  D++++DTAGR   N +  A I +  R+L  ++  A 
Sbjct: 246 IADEPEDVSS------ALASLQSCDLVLVDTAGR---NFLNPASIEQTKRMLTPIE--AD 294

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +L V  AT   +AL+   M   ++     I TK+D T   G +  +V   ++P+ ++ 
Sbjct: 295 EVLLVVSLATKPTDALKVANMAKPLS-VDKFIFTKLDETESVGMIPSLVALCQLPIAYVT 353

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 354 TGQNVPD 360


>gi|150021315|ref|YP_001306669.1| flagellar biosynthesis regulator FlhF [Thermosipho melanesiensis
           BI429]
 gi|149793836|gb|ABR31284.1| GTP-binding signal recognition particle SRP54, G- domain
           [Thermosipho melanesiensis BI429]
          Length = 373

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 22/243 (9%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           D+   + +K++E +  K    D   +   + +SE+     +P  K  N D + +   ++ 
Sbjct: 126 DVNQEIIEKVIEYIRIKYGKIDFEDENTRFVLSEI----FLPFIKTDNPDITGK---VMF 178

Query: 117 VGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VG  GVGKTT + KL+ KMS +   KV +   DT+R AA +QLK +A          +I 
Sbjct: 179 VGPTGVGKTTTLAKLAAKMSINEHKKVGILTLDTYRIAATEQLKTYA-------TLMDIP 231

Query: 176 SDAAALAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
              A    EA  + +A    +V+ IDTAGR   N + M  I  M  ++      +P    
Sbjct: 232 MRVAYTPKEAKIELEAMADFEVVFIDTAGRSQKNELQMNEIKAMAEII------SPDYKF 285

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+      + L  +         T +I+TKMD T+  G  +        P+ ++  G+ 
Sbjct: 286 LVVGMQYRSSDLELISKKFNDVSPTHIILTKMDETSSLGHFLNAGHFINKPIIYITNGQR 345

Query: 295 IND 297
           + D
Sbjct: 346 VPD 348


>gi|295706265|ref|YP_003599340.1| flagellar biosynthetic protein FlhF [Bacillus megaterium DSM 319]
 gi|294803924|gb|ADF40990.1| flagellar biosynthetic protein FlhF [Bacillus megaterium DSM 319]
          Length = 365

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 18/195 (9%)

Query: 116 VVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           VVG  GVGKTT + KL+ K + +   K+     DT+R +AI+QLK +A   +A       
Sbjct: 174 VVGPTGVGKTTTLAKLAAKCVLEHNQKIAFITTDTYRISAIEQLKTYASILNAPLTICYN 233

Query: 175 GSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           G+D        FK+A  + +  DV+ IDTAGR       +  + K+I   + L       
Sbjct: 234 GAD--------FKKALLETEAYDVIFIDTAGRNFLEQQYVNDLKKIITFQEDL------Q 279

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
              VL  T+  + ++ V    A      LI TK D T R G L+ ++  +     F   G
Sbjct: 280 TFLVLALTSKVSDMKAVYERFASLPVDHLIFTKQDETTRKGSLLNMLYHYGQRAAFTTNG 339

Query: 293 EGI-NDLEPFVAKDF 306
           + +  D+  F  K+F
Sbjct: 340 QDVPEDVSAFKIKEF 354


>gi|32266642|ref|NP_860674.1| flagellar biosynthesis regulator FlhF [Helicobacter hepaticus ATCC
           51449]
 gi|32262693|gb|AAP77740.1| flagellar GTP-binding protein FlhF [Helicobacter hepaticus ATCC
           51449]
          Length = 483

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 27/217 (12%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAA 146
           E++ KM+    +P N   S+   +I++VG  GVGKTT + KL+ + S   +   +V +  
Sbjct: 264 EVLRKMI--YCRPENLQ-SNAKKIIMLVGPTGVGKTTTLAKLAARYSLMLNQRYRVGVVT 320

Query: 147 GDTFRSAAIDQLKIWAD--RTSADFVC--SEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
            DT+R AA+DQL  +A   + S D V    E G    +L          K  D ++IDTA
Sbjct: 321 LDTYRLAAVDQLMAYARMMKLSIDTVVEPEEFGKAIDSL----------KHCDYILIDTA 370

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           G   ++   +  +   +    ++D      V  VL        LR      +      LI
Sbjct: 371 GHSQHDRSKLQALKSYLNNDYKID------VSLVLAINAKYEDLRDTYNAFSEMNIDTLI 424

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298
            +K+D +   G +  +V   K P+ +L +G+G+ NDL
Sbjct: 425 FSKLDESRNFGNMFSLVYETKKPISYLSIGQGVPNDL 461


>gi|302761688|ref|XP_002964266.1| hypothetical protein SELMODRAFT_81201 [Selaginella moellendorffii]
 gi|300167995|gb|EFJ34599.1| hypothetical protein SELMODRAFT_81201 [Selaginella moellendorffii]
          Length = 221

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 47  EELEDLLIRSDIGVAVAQ-------KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
            E+   L+++D+   + Q       K VE+L      + +  + V +++     + ++  
Sbjct: 33  NEITHALLQADVQFKLVQALSSNVRKSVEKLAAGHDKRHIIQKAVFHEL-----RAMLDA 87

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            KP       R +V+++VG+ G GKTT   K +      G    L   DTFR+ A DQLK
Sbjct: 88  GKPSFTPTKGRTNVVMLVGLQGCGKTTTCSKYALHYRKKGFNPALVCADTFRAGAFDQLK 147

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
             A +    F  S   +D   +A E  ++    K D++I+DT+GR    + L 
Sbjct: 148 QNATKVKIPFYGSYTETDPVVIAQEGVRKFADAKHDLIILDTSGRHKQENALF 200


>gi|251778674|ref|ZP_04821594.1| flagellar biosynthesis protein FlhF [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082989|gb|EES48879.1| flagellar biosynthesis protein FlhF [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 403

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 115/246 (46%), Gaps = 27/246 (10%)

Query: 58  IGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           I + V ++  EE+L+K     D ++     D  E++ K+   +    + D S +   I +
Sbjct: 161 IEIDVDEQFHEEILSKINNTDDENI-----DKYEVLRKIFEDVFLECSKDISGK---IAL 212

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VG  GVGKTT I KL+ K+S    K V L   DT+R  AI+QLK +A+  +  F      
Sbjct: 213 VGPTGVGKTTTIAKLAGKLSLIDKKRVGLITVDTYRIGAIEQLKTYAEIMNIPF------ 266

Query: 176 SDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                +  +  ++A       DV++IDT GR   N++ ++ +   +      +   P  V
Sbjct: 267 --KVVITIKEMEEAINAMNDCDVILIDTTGRSSKNTMQISELRAFV------EKANPDYV 318

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             V+ ATT    +  +   ++      +I+TK+D T   G L  I+     PV ++  G+
Sbjct: 319 SMVISATTKNRDIVSILNGYSDLSYDNVIITKLDETTVYGSLYNIMKISNKPVKYITTGQ 378

Query: 294 GI-NDL 298
            + ND+
Sbjct: 379 NVPNDI 384


>gi|296125234|ref|YP_003632486.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Brachyspira murdochii DSM 12563]
 gi|296017050|gb|ADG70287.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Brachyspira murdochii DSM 12563]
          Length = 657

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 18/194 (9%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           D   +  +I+ VG  GVGKTT I K++ +   +G KV     D +R AA+DQL+ +A   
Sbjct: 455 DVGAKKKIIVFVGPTGVGKTTTIPKIAAQHMKSGKKVSFVTIDNYRIAAVDQLQRYASIM 514

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVD---VLIIDTAGRLHNNSILMAGIGKMIRVL 222
              F      S   AL      +A+ +K+D   +L IDT GR   ++  +  + K    +
Sbjct: 515 KVPFTS---ASTPEAL------RAEIRKMDNSSLLFIDTMGRSPKSAEEIVAMSKYFTTV 565

Query: 223 KRLDPHAPHSVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            R D      +  V+ AT   ++A++ +  F       G+I+TK+D T      I  +  
Sbjct: 566 GRFD----MDIQLVMSATAKYKDAVKILNGFKPT-NYKGVILTKVDETDYLASSICAITR 620

Query: 282 HKIPVYFLGVGEGI 295
            K+P+ ++  G+G+
Sbjct: 621 KKLPITYITHGQGV 634


>gi|226223312|ref|YP_002757419.1| flagellar biosynthesis protein FlhF [Listeria monocytogenes
           Clip81459]
 gi|225875774|emb|CAS04477.1| Putative flagellar biosynthesis protein FlhF [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 407

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 15/192 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+  A
Sbjct: 205 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDA 262

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           + +   + +  A L            VD ++IDT GR +     ++ I     V+     
Sbjct: 263 ELI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV----- 314

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285
              H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++    +P
Sbjct: 315 ---HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 371

Query: 286 VYFLGVGEGIND 297
           V ++  G+ I +
Sbjct: 372 VLYMTDGQNITE 383


>gi|195953857|ref|YP_002122147.1| GTP-binding signal recognition particle SRP54 G- domain
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933469|gb|ACG58169.1| GTP-binding signal recognition particle SRP54 G- domain
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 373

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 17/247 (6%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           I + V Q I +++L      D+++ R+     +    +   LSK  +    DFS     I
Sbjct: 123 ISMGVEQDIAKKILEDSCGFDININRLDLKYEDDYESLKEGLSKNISLKTLDFSKSILSI 182

Query: 115 L-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           L +VG  GVGKTT I KL+      G K  +   D++R+ A+ QL+ + +          
Sbjct: 183 LALVGPTGVGKTTTIAKLAYMYKTQGFKTGVITLDSYRTGAVQQLQSYVNLLEMPLRV-- 240

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +D      E     +   +D++ IDTAGR   +SI +  +   +  +  L+      +
Sbjct: 241 --ADTPQKLRECI--GELSSLDIIFIDTAGRSQYDSIRLKELKHYLENVPSLE------I 290

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
              +  TT +  +          G   +I TK+D T   G ++       +P+ FL  G+
Sbjct: 291 ALTVSTTTDERIILDSAKRFGELGIKSIIFTKLDETVYPGCIVNAAFKTNLPISFLTFGQ 350

Query: 294 GI-NDLE 299
            + ND+E
Sbjct: 351 KVPNDIE 357


>gi|217077811|ref|YP_002335529.1| flagellar biosynthesis regulator FlhF [Thermosipho africanus
           TCF52B]
 gi|217037666|gb|ACJ76188.1| flagellar biosynthesis protein FlhF [Thermosipho africanus TCF52B]
          Length = 378

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 15/186 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           ++ VG  GVGKTT + KL+ KMS +   KV +   DT+R AA +QLK +A          
Sbjct: 177 VMFVGPTGVGKTTTLAKLAAKMSINNHKKVGILTLDTYRIAATEQLKTYA-------TLM 229

Query: 173 EIGSDAAALAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +I    A    EA  + +A    D++ IDTAGR   N + M  I  M  ++       P 
Sbjct: 230 DIPMRVAYTPKEAKIELEAMADFDLVFIDTAGRSQKNDLQMNEIKAMSEIIN------PD 283

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            +  V+      N +  +    +    T +I+TKMD T+  G  + I      P+ F+  
Sbjct: 284 FIFLVVGMQYRSNDVELITKKFSSVSPTHVILTKMDETSSLGHFLNIGHYINSPIIFVTN 343

Query: 292 GEGIND 297
           G+ + D
Sbjct: 344 GQRVPD 349


>gi|56419774|ref|YP_147092.1| flagellar biosynthesis regulator FlhF [Geobacillus kaustophilus
           HTA426]
 gi|56379616|dbj|BAD75524.1| flagellar biosynthetic protein (flagellar GTP-binding protein)
           [Geobacillus kaustophilus HTA426]
          Length = 409

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 118/258 (45%), Gaps = 28/258 (10%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDV-SVQRVLYDVSELIHKMLMPLSKPFNW 105
           E E  L+R  +     +++++ LL + YA KD  S   V     E +  +L  L  PF  
Sbjct: 152 EAERRLVRQGMADVYVRQVMDRLLERWYADKDSRSPAAVSAWTKEAVRDLLSTL--PFVK 209

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
               + ++IL+ G  GVGKTT + K++ + + + G KV     DT+R AAIDQLK +AD 
Sbjct: 210 TAEQKKYMILL-GPTGVGKTTTLAKMAGRAVLEQGKKVGFITADTYRIAAIDQLKTYADI 268

Query: 165 TSADF-VCSEIGSDAAALAYEA--FKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A   VC           Y A  F+ A+ K    D++ +DTAGR   N   +  + + +
Sbjct: 269 LHAPLEVC-----------YNADDFRTAKRKLAGCDLVFVDTAGRNFRNPQYVDELQQTL 317

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
                    +      V  AT   + ++ +    +      LI+TK+D T   G ++ ++
Sbjct: 318 EF------DSETETFLVFAATGKYDDMKMIYNHFSRLPIDRLIVTKLDETDSFGTIVNVL 371

Query: 280 VTHKIPVYFLGVGEGIND 297
           +  ++   +   G+ + D
Sbjct: 372 LDSRLAAAYFTNGQNVPD 389


>gi|237755443|ref|ZP_04584068.1| flagellar biosynthesis protein FlhF [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692407|gb|EEP61390.1| flagellar biosynthesis protein FlhF [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 399

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 141/304 (46%), Gaps = 29/304 (9%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDD---GVREELEDLLIRSDIG 59
           Q++  ++   I+  T    +  L +KE   D  I+ R + +   G   +L +LLI+ D+ 
Sbjct: 92  QEIVEKAEPVIKTTTHNDLNQKLNIKEEYYDNNITYREITEEFTGKALDLINLLIQKDVE 151

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK--MLMPLSKPFNWD---F--SHRPH 112
           + VA++IV      R A  + +     D+    ++  ++  L K F +    F  S R  
Sbjct: 152 LTVAKEIV------RNACGLEMGSNKLDLKHFTYRESLIEGLEKSFIFKGDIFKDSDRRR 205

Query: 113 VILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           V+  +G  GVGKTT + K++ K+  +   KV + + DTF++ A DQ + + +     F  
Sbjct: 206 VVAFLGPTGVGKTTNLFKVASKLILEENRKVAVVSIDTFKAGAGDQARSYCNILGIPF-- 263

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            +I SD   L  E         VDVL+IDT GR H +   +  I + +R++  ++     
Sbjct: 264 -QILSDPKKLR-ETVDDFDF--VDVLLIDTIGRSHYDHWKLGEIKETLRLIDEIE----- 314

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            ++ V      + +   ++ +        L  TK+D TA  G ++ +    K+P+ ++  
Sbjct: 315 YMMVVSCNWKNKESYNLIQKYRKFFNINYLFFTKIDETAYPGTILNLAYKTKLPLTYIST 374

Query: 292 GEGI 295
           G+ +
Sbjct: 375 GQNV 378


>gi|297530586|ref|YP_003671861.1| flagellar biosynthetic protein FlhF [Geobacillus sp. C56-T3]
 gi|297253838|gb|ADI27284.1| flagellar biosynthetic protein FlhF [Geobacillus sp. C56-T3]
          Length = 390

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 118/258 (45%), Gaps = 28/258 (10%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYA-KD-VSVQRVLYDVSELIHKMLMPLSKPFNW 105
           E E  L+R  +     +++++ LL + YA KD  S   V     E +  +L  L  PF  
Sbjct: 133 EAERRLVRQGMADVYVRQVMDRLLERWYADKDGRSPAAVSAWTKEAVRDLLSTL--PFVK 190

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
               + ++IL+ G  GVGKTT + K++ + + + G KV     DT+R AAIDQLK +AD 
Sbjct: 191 TAEQKKYMILL-GPTGVGKTTTLAKMAGRAVLEQGKKVGFITADTYRIAAIDQLKTYADI 249

Query: 165 TSADF-VCSEIGSDAAALAYEA--FKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A   VC           Y A  F+ A+ K    D++ +DTAGR   N   +  + + +
Sbjct: 250 LHAPLEVC-----------YNADDFRTAKRKLAGCDLVFVDTAGRNFRNPQYVDELQQTL 298

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
                    +      V  AT   + ++ +    +      LI+TK+D T   G ++ ++
Sbjct: 299 EF------DSETETFLVFAATGKYDDMKTIYNHFSRLPIDRLIVTKLDETDSFGTIVNVL 352

Query: 280 VTHKIPVYFLGVGEGIND 297
           +  ++   +   G+ + D
Sbjct: 353 LDSRLAAAYFTNGQNVPD 370


>gi|256088727|ref|XP_002580477.1| signal recognition particle receptor alpha subunit (sr-alpha)
           [Schistosoma mansoni]
 gi|238666057|emb|CAZ36716.1| signal recognition particle receptor alpha subunit (sr-alpha),
           putative [Schistosoma mansoni]
          Length = 658

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 124/288 (43%), Gaps = 44/288 (15%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMP--- 98
           E+L + L+  ++ +++A ++   +  +     +        RV   + E+  ++L+    
Sbjct: 365 EQLRERLVGKNVAMSIADRVCSNVADRLVGTSLGTFERIYPRVRASLEEVCSRILVSGRR 424

Query: 99  ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK--------------LSKKMSDAGLK 141
              L    +     RP+ I+  GVNGVGK+T + K              +    S    K
Sbjct: 425 VDVLRDALDARTQGRPYSIVFCGVNGVGKSTNLAKVCHLTKLLLQIFVFICAYQSCFCAK 484

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V   +   F+   +++ K      ++  V + +  +A  + +E   Q + +  DV+++DT
Sbjct: 485 VPNTSMGRFKQTILNEFKRHPIAQASGRVDNAMAFEAKGIGFEC--QTRDRHFDVVLVDT 542

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAV 255
           AGR+ +N  LM  +  +I+       + P  VL V +A  G  A+ Q+  F      H+ 
Sbjct: 543 AGRMQDNEPLMRALASLIQT------NQPDLVLFVGEALVGNEAVDQLVKFNQSLADHSY 596

Query: 256 AGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +       G+++TK D    + G  I +      P+ F+G G+  +DL
Sbjct: 597 SDRPRCIDGIVLTKFDTIDDKVGAAISMACISNQPIVFVGTGQTYSDL 644


>gi|256088725|ref|XP_002580476.1| signal recognition particle receptor alpha subunit (sr-alpha)
           [Schistosoma mansoni]
 gi|238666056|emb|CAZ36715.1| signal recognition particle receptor alpha subunit (sr-alpha),
           putative [Schistosoma mansoni]
          Length = 655

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 124/288 (43%), Gaps = 44/288 (15%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMP--- 98
           E+L + L+  ++ +++A ++   +  +     +        RV   + E+  ++L+    
Sbjct: 362 EQLRERLVGKNVAMSIADRVCSNVADRLVGTSLGTFERIYPRVRASLEEVCSRILVSGRR 421

Query: 99  ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK--------------LSKKMSDAGLK 141
              L    +     RP+ I+  GVNGVGK+T + K              +    S    K
Sbjct: 422 VDVLRDALDARTQGRPYSIVFCGVNGVGKSTNLAKVCHLTKLLLQIFVFICAYQSCFCAK 481

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V   +   F+   +++ K      ++  V + +  +A  + +E   Q + +  DV+++DT
Sbjct: 482 VPNTSMGRFKQTILNEFKRHPIAQASGRVDNAMAFEAKGIGFEC--QTRDRHFDVVLVDT 539

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF------HAV 255
           AGR+ +N  LM  +  +I+       + P  VL V +A  G  A+ Q+  F      H+ 
Sbjct: 540 AGRMQDNEPLMRALASLIQT------NQPDLVLFVGEALVGNEAVDQLVKFNQSLADHSY 593

Query: 256 AGTT----GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +       G+++TK D    + G  I +      P+ F+G G+  +DL
Sbjct: 594 SDRPRCIDGIVLTKFDTIDDKVGAAISMACISNQPIVFVGTGQTYSDL 641


>gi|222832233|gb|EEE70710.1| predicted protein [Populus trichocarpa]
          Length = 143

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 2/114 (1%)

Query: 32  ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSE 90
           I  + +  +++D + EELED L+ +D GV   + ++ +L  + + AK      V   +++
Sbjct: 15  IATVFTGTQINDALYEELEDALLMADTGVKATEHLLADLRRRVKEAKATDPAAVKALLAD 74

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
            +  +L PL KP      H+P VI+V GVNG GKTT IGKL++ ++D G  V+L
Sbjct: 75  ALADLLRPLEKPLVIG-EHQPTVIMVAGVNGAGKTTSIGKLTRHLADEGQSVLL 127


>gi|187933078|ref|YP_001885060.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721231|gb|ACD22452.1| flagellar biosynthesis protein FlhF [Clostridium botulinum B str.
           Eklund 17B]
          Length = 403

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 18/189 (9%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I +VG  GVGKTT I KL+ K+S    K V L   DT+R  AI+QLK +A+  +  F   
Sbjct: 210 IALVGPTGVGKTTTIAKLAGKLSLIDKKSVGLITVDTYRIGAIEQLKTYAEIMNIPF--- 266

Query: 173 EIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                   +  +  ++A       DV++IDT GR   N++ ++ +   +      +   P
Sbjct: 267 -----KVVITIKEMEEAINSMNDCDVILIDTTGRSSKNTMQISELRAFV------EKANP 315

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V  V+ ATT    +  +   ++      +I+TK+D T   G L  I+     PV ++ 
Sbjct: 316 DYVSMVISATTKNRDIVSILNGYSDLSYDNVIITKLDETTVYGSLYNIMKRSNKPVKYIT 375

Query: 291 VGEGI-NDL 298
            G+ + ND+
Sbjct: 376 TGQNVPNDM 384


>gi|118444135|ref|YP_877993.1| flagellar biosynthesis regulator FlhF [Clostridium novyi NT]
 gi|118134591|gb|ABK61635.1| flagellar biosynthesis protein flhF [Clostridium novyi NT]
          Length = 411

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 14/202 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           V+ +VG  GVGKTT I KL+ +++     KV L   DT+R  AI+QL  +A   S  F  
Sbjct: 217 VVALVGPTGVGKTTTIAKLAGRLALIEKKKVGLITVDTYRIGAIEQLSTYASIMSIPF-K 275

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S         A E+ K  +     ++++DT GR   N + +A +   ++           
Sbjct: 276 SVFSIKEMEAALESMKDCE-----IILLDTTGRSSKNIMQIAELNAFVQ------KANSK 324

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
           +V  V+ ATT    +  +   +     T +I+TK+D T   G ++ I+ +   P+ F+  
Sbjct: 325 NVFLVISATTKNRDIESIIEGYKTLNYTNVIITKLDETTTYGSILNILNSANKPLSFVTT 384

Query: 292 GEGI-NDLEPFVAKDFSAVITG 312
           G+ + +D +    ++ + ++ G
Sbjct: 385 GQNVPDDFKSITKEEVAKLVLG 406


>gi|322379815|ref|ZP_08054112.1| flagellar biosynthesis regulator FlhF [Helicobacter suis HS5]
 gi|321147783|gb|EFX42386.1| flagellar biosynthesis regulator FlhF [Helicobacter suis HS5]
          Length = 459

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKM 135
           V+V+R      E++ KM+    +  + ++     ++++VG  GVGKTT + KL+    KM
Sbjct: 230 VTVKRYF---REVLRKMIYCRHEGLDLNYKK---ILMLVGPTGVGKTTTLAKLAARYSKM 283

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRT--SADFV--CSEIGSDAAALAYEAFKQAQA 191
            D   KV +   DT+R  A++QL  +A +   S + V    +   +  AL Y        
Sbjct: 284 LDKKYKVGILTLDTYRIGAVEQLVWYAKKMKISIETVMDTQDFDREMQALEY-------- 335

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV++IDT G   ++S  +  + K      ++D         VL  TT    L+ +  
Sbjct: 336 --CDVVLIDTTGHSQHDSKKIENLKKFTENGYKID------TTLVLSLTTKYEDLKDIYQ 387

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
             +      LI TK+D +   G L  +V   K P+ +L +G+ +
Sbjct: 388 AFSPLEIDSLIFTKLDESRGFGNLFSLVYESKKPISYLSIGQEV 431


>gi|302874607|ref|YP_003843240.1| flagellar biosynthetic protein FlhF [Clostridium cellulovorans
           743B]
 gi|307690782|ref|ZP_07633228.1| flagellar biosynthesis regulator FlhF [Clostridium cellulovorans
           743B]
 gi|302577464|gb|ADL51476.1| flagellar biosynthetic protein FlhF [Clostridium cellulovorans
           743B]
          Length = 410

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 14/191 (7%)

Query: 107 FSHRPH-VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           F   P+ V+++VG  GVGKTT I KL+ + S     KV L   DT+R  A++QLK +++ 
Sbjct: 209 FEKTPNKVVILVGPTGVGKTTTIAKLAGRYSLMEKKKVGLITLDTYRIGAVEQLKTYSEI 268

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            +  F      SD   +A + F        D+++IDT GR   N++ ++ +   +  +  
Sbjct: 269 MNIPFKVIFNMSD-MEIAIKEFDYC-----DIILIDTTGRSSKNAMQISELRAYLHKV-- 320

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
               A  ++  VL +TT    +  +   +       +I+TK+D T+  G +I I+   + 
Sbjct: 321 ----ATDNIYLVLSSTTKNKDIEAIIEGYRPLNYNAVIITKLDETSTYGSVINILQDSQK 376

Query: 285 PVYFLGVGEGI 295
           P+ F+  G+ +
Sbjct: 377 PLGFITTGQSV 387


>gi|261419439|ref|YP_003253121.1| flagellar biosynthesis regulator FlhF [Geobacillus sp. Y412MC61]
 gi|319766254|ref|YP_004131755.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y412MC52]
 gi|261375896|gb|ACX78639.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y412MC61]
 gi|317111120|gb|ADU93612.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y412MC52]
          Length = 400

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 119/258 (46%), Gaps = 28/258 (10%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYA-KD-VSVQRVLYDVSELIHKMLMPLSKPFNW 105
           E E  L+R  +     +++++ LL + YA KD  S   V     E +  +L  L  PF  
Sbjct: 143 EAERRLVRQGMADVYVRQVMDRLLERWYADKDGRSPAAVSAWTKEAVRDLLSTL--PFVK 200

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
               + ++IL+ G  GVGKTT + K++ + + + G KV     DT+R AAIDQLK +AD 
Sbjct: 201 TAEQKKYMILL-GPTGVGKTTTLAKMAGRAVLEQGKKVGFITADTYRIAAIDQLKTYADI 259

Query: 165 TSADF-VCSEIGSDAAALAYEA--FKQAQAK--KVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A   VC           Y A  F+ A+ K    D++ +DTAGR   N   +  + +  
Sbjct: 260 LHAPLEVC-----------YNADDFRTAKRKLAGCDLVFVDTAGRNFRNPQYVDELQQT- 307

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
                L+  +      V  AT   + ++ +    +      LI+TK+D T   G ++ ++
Sbjct: 308 -----LEFDSETETFLVFAATGKYDDMKTIYNHFSRLPIDRLIVTKLDETDSFGTIVNVL 362

Query: 280 VTHKIPVYFLGVGEGIND 297
           +  ++   +   G+ + D
Sbjct: 363 LDSRLAAAYFTNGQNVPD 380


>gi|220932504|ref|YP_002509412.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halothermothrix orenii H 168]
 gi|219993814|gb|ACL70417.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halothermothrix orenii H 168]
          Length = 356

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 120/250 (48%), Gaps = 14/250 (5%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +EL+ K     V  Q+ L  + E     ++   +P   + + +  V+L  G  GVGKTT 
Sbjct: 118 QELMKKLKNASVDSQKSLISLLERKLNQVIGNPEPIRVNRNEQ-KVVLFAGPTGVGKTTT 176

Query: 128 IGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           I KL+ + + D  +KV L   DT+R AA+ QL+ ++D  +          + + +  +  
Sbjct: 177 IAKLAARFALDKEVKVGLITADTYRIAAVQQLQTYSDIINIPLHVVYNERELSQIIRDKL 236

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K+ Q     ++++DTAG   N+ +    +G++ +   R      H ++ +   +T    +
Sbjct: 237 KKYQ-----LILVDTAGSSWNDQL---QLGRLKKFASRNYVDEIHLLISM---STKSEDI 285

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKD 305
           + +    ++     L++TK+D T   G ++ I   +K+P  ++  G+ + +D++P   ++
Sbjct: 286 KGILKKFSIIKPDKLLLTKLDETTTYGDIVNIKREYKLPYSYITYGQDVPDDIKPARKEE 345

Query: 306 FSAVITGCLD 315
               I G L+
Sbjct: 346 LIQYILGDLN 355


>gi|224151767|ref|XP_002189896.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata]
          Length = 173

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%)

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+
Sbjct: 2   PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFI 61

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D EPF  + F + + G  D
Sbjct: 62  GTGEHIDDFEPFKTQPFISKLLGMGD 87


>gi|168180931|ref|ZP_02615595.1| flagellar biosynthesis protein FlhF [Clostridium botulinum NCTC
           2916]
 gi|182668293|gb|EDT80272.1| flagellar biosynthesis protein FlhF [Clostridium botulinum NCTC
           2916]
          Length = 408

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 17/189 (8%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            V ++VG  GVGKTT I KL+ K+S  D   KV L   DT+R  A++QLK +AD  +  F
Sbjct: 213 KVTVLVGPTGVGKTTTIAKLAGKLSLIDKK-KVGLITIDTYRIGAVEQLKTYADIMNIPF 271

Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V   I     A+    +        D +++DT GR   N + ++ +   I  +K     
Sbjct: 272 KVVFSIKDMEKAIIDLGY-------CDAILVDTTGRSSKNMMQISELRAFIEKIK----- 319

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
              SV  V+ A+T    +  +   +++     +I+TK+D T+  G ++ I+   K P+ F
Sbjct: 320 -EKSVHLVISASTKNKDIETIIKGYSILEYENIIITKLDETSIYGSILTILDKGKKPISF 378

Query: 289 LGVGEGIND 297
           +  G+ + D
Sbjct: 379 ITTGQDVPD 387


>gi|258514020|ref|YP_003190242.1| flagellar biosynthesis regulator FlhF [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777725|gb|ACV61619.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 438

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 20/249 (8%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           +L+ +D+   + ++++E+    RY    S +  +  V+ LI+K +  L +P   D S   
Sbjct: 180 ILLDTDMDEVLVERLLEDA-NDRYDSGRSDRDEMLKVN-LINK-ITGLIEPAYQDISF-G 235

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWAD--RTSAD 168
            V   +G  GVGKTT + KL+ + S    K + L   DT+R  A++QLK + +    S D
Sbjct: 236 KVYAFIGPTGVGKTTTLAKLAAQFSLFYQKDIALITIDTYRIGAVEQLKTYGEIIGVSLD 295

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V +        + +        K  D+++IDTAG   NN++ +  +   + V+      
Sbjct: 296 VVMTPEDLHRVIMRH--------KDKDIILIDTAGHPSNNAVYVQELKGFLDVI-----S 342

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +  VL ATT    + ++         + +I TK+D T   G ++ I+    IP+Y+
Sbjct: 343 LPLDIFLVLSATTKNKDMFKIIDEFGRKDISKIIFTKIDETESLGAMLNIIYRTNIPIYY 402

Query: 289 LGVGEGIND 297
           +  G+ + D
Sbjct: 403 VTDGQSVPD 411


>gi|322378961|ref|ZP_08053375.1| flagellar biosynthesis regulator FlhF [Helicobacter suis HS1]
 gi|321148637|gb|EFX43123.1| flagellar biosynthesis regulator FlhF [Helicobacter suis HS1]
          Length = 443

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKM 135
           V+V+R      E++ KM+    +  + ++     ++++VG  GVGKTT + KL+    KM
Sbjct: 214 VTVKRYF---REVLRKMIYCRHEGLDLNYKK---ILMLVGPTGVGKTTTLAKLAARYSKM 267

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRT--SADFV--CSEIGSDAAALAYEAFKQAQA 191
            D   KV +   DT+R  A++QL  +A +   S + V    +   +  AL Y        
Sbjct: 268 LDKKYKVGILTLDTYRIGAVEQLVWYAKKMKISIETVMDTQDFDREMQALEY-------- 319

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV++IDT G   ++S  +  + K      ++D         VL  TT    L+ +  
Sbjct: 320 --CDVVLIDTTGHSQHDSKKIENLKKFTENGYKID------TTLVLSLTTKYEDLKDIYQ 371

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
             +      LI TK+D +   G L  +V   K P+ +L +G+ +
Sbjct: 372 AFSPLEIDSLIFTKLDESRGFGNLFSLVYESKKPISYLSIGQEV 415


>gi|300854224|ref|YP_003779208.1| flagellar biosynthesis protein FlhF [Clostridium ljungdahlii DSM
           13528]
 gi|300434339|gb|ADK14106.1| flagellar biosynthesis protein FlhF [Clostridium ljungdahlii DSM
           13528]
          Length = 397

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 15/186 (8%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169
           +++++VG  GVGKTT I KL+ K+S     KV L   DT+R  A++QLK +AD  +  F 
Sbjct: 202 NIVVLVGPTGVGKTTTIAKLAGKLSLIEKKKVGLITIDTYRIGAVEQLKTYADIMNIPFQ 261

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V   I     A+             DV++IDT GR   N + ++ +   I      D   
Sbjct: 262 VVFTIKDMGKAI-------ENMSDCDVILIDTTGRSSKNKMQISELRAFI------DKVN 308

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             ++  V+  TT    +  +   +       +I+TK+D T+  G ++ I+   K P+ F+
Sbjct: 309 TDNIHLVISCTTKNRDIDVIVEGYKELNYNNVIITKLDETSTYGSILNILQAAKKPISFV 368

Query: 290 GVGEGI 295
             G+ +
Sbjct: 369 TTGQNV 374


>gi|251797423|ref|YP_003012154.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Paenibacillus sp. JDR-2]
 gi|247545049|gb|ACT02068.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Paenibacillus sp. JDR-2]
          Length = 416

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 17/219 (7%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGD 148
           EL+ + L P S   +   S    ++  VG  GVGKTT I KL+   S   G ++ L   D
Sbjct: 202 ELLLEWLDPYS---HQSISESARIVHFVGPTGVGKTTTIAKLAAGQSIKFGRQIGLITSD 258

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R AA+DQL+ +A+  +   V  E+      L  +AFKQ + +  +++ +DTAGR   N
Sbjct: 259 TYRIAAVDQLRTYANILN---VPMEVVFSPMDLP-KAFKQLEDR--ELIYMDTAGRNFRN 312

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
            + ++ +  +++  ++ +     +VL VL  T     +  V       G   ++ TK+D 
Sbjct: 313 ELHVSEVNSLLQSSQQSE-----TVL-VLSLTGKTKDMMAVADNFVKYGVRKVLFTKLDE 366

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306
           T+  G ++ + + +++   F+  G+ + +D+ PF A+ +
Sbjct: 367 TSVYGSILNLALKNELQPVFVASGQTVPDDIAPFNAERY 405


>gi|257457598|ref|ZP_05622765.1| SRP54-type protein, GTPase domain [Treponema vincentii ATCC 35580]
 gi|257444984|gb|EEV20060.1| SRP54-type protein, GTPase domain [Treponema vincentii ATCC 35580]
          Length = 448

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 20/209 (9%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           D   +  V+L+VG  GVGKTT + K++    +K S+  L+V +   D +R  A  Q+K +
Sbjct: 222 DDQPKTRVVLLVGPTGVGKTTTLAKIAVQYIRKNSEHPLRVKVITIDNWRIGAAYQMKRY 281

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            +      + +   + A    Y A  + +A   DV+ IDT GR   +      I  M   
Sbjct: 282 CELMGIPLMVA--SNPAEVRKYMALYREEA---DVICIDTIGRSPKDR---EKISTMQNY 333

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
              L   A   V   + A T  N +R++   +AV     LI+TK D T+  G L  I+  
Sbjct: 334 FAELGDDA--EVYLTVCAGTRINDIREIMKEYAVFKYKSLIITKFDETSYIGNLFSIISE 391

Query: 282 HKIPVYFLGVGEGIN------DLEPFVAK 304
             IP+ ++  G+ +       D+E F+ K
Sbjct: 392 TNIPITYITAGQEVPQDFMLADIETFLKK 420


>gi|148266120|ref|YP_001232826.1| GTP-binding signal recognition particle [Geobacter uraniireducens
           Rf4]
 gi|146399620|gb|ABQ28253.1| GTP-binding signal recognition particle SRP54, G- domain [Geobacter
           uraniireducens Rf4]
          Length = 447

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 14/201 (6%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            ++ +VG  GVGKTT I KL+   + + G +V +   D FR  AI+QLK ++       V
Sbjct: 253 RIMAIVGPTGVGKTTTIAKLAAMYALNRGARVAMVTTDNFRVGAIEQLKTYSKIMD---V 309

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E+ + A  L     K A     D+++IDTAGR   +        K+  +   L+ H  
Sbjct: 310 PLEVAATAKELETVLAKHADK---DLILIDTAGRSPKDR------EKLEELKVYLESHPA 360

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                 + ATT    +  +    +V   T L+ TK+D +   G ++   V +K P+ +  
Sbjct: 361 IETYLCISATTRDREMNDIVANFSVLPITRLLFTKLDESESYGCIVNAQVRNKYPLSYFT 420

Query: 291 VGEGI-NDLEPFVAKDFSAVI 310
            G+ +  D+E   A+  + ++
Sbjct: 421 TGQKVPEDIEVATARKLANLV 441


>gi|118581845|ref|YP_903095.1| GTP-binding signal recognition particle [Pelobacter propionicus DSM
           2379]
 gi|118504555|gb|ABL01038.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Pelobacter propionicus DSM 2379]
          Length = 446

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 14/191 (7%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I +VG  GVGKTT   KL+   + + G KV L   D FR  AI+QLK ++       
Sbjct: 250 PRIIALVGPTGVGKTTTTAKLAAMHAFNRGNKVALITMDIFRVGAIEQLKTYSRIMG--- 306

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +  E+ S    L     K A     D++ IDTAGR H ++       K+  + +      
Sbjct: 307 IPIEVASTPKELESAVEKHAD---CDLIFIDTAGRSHKDT------EKLNEMKQFFADKI 357

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  V   L ATT    L ++    ++   + ++ TK+D +   G +I +++   + V + 
Sbjct: 358 PMEVFLCLSATTKDRELTEILNCFSIFQISKVVFTKIDESESFGNMINVLMKGNLQVAYF 417

Query: 290 GVGEGI-NDLE 299
             G+ +  D+E
Sbjct: 418 TTGQRVPEDIE 428


>gi|325295405|ref|YP_004281919.1| flagellar biosynthetic protein FlhF [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065853|gb|ADY73860.1| flagellar biosynthetic protein FlhF [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 376

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 120/249 (48%), Gaps = 18/249 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHR 110
           LI+  I   V + I EEL+ +    D+  +++      L   ++  + K   F  +FS +
Sbjct: 121 LIKVLIQKGVKKNIAEELVKEACGLDIETEKLDLSTPTLKGALIKGIEKHIEFRGEFSIK 180

Query: 111 P---HVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           P   ++I  VG  GVGKTT + K+ S+ + +  LKV +   DTF+  A+ Q + +A   +
Sbjct: 181 PGEKNIIAFVGPTGVGKTTNLFKIASRFVIEKDLKVGVITTDTFKVGAVQQARTYASILN 240

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             F    + +D+  L       ++ + +DV+ IDT GR H +      +G++  +L  ++
Sbjct: 241 IPFF---VVTDSKKLKETV---SKMENLDVIFIDTVGRSHYD---YWRLGEIKAILSAIN 291

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            +   ++L   +  T + A+  V  +        +  TK+D T+  G LI I V   +PV
Sbjct: 292 LNV--TLLISCNYKTSE-AVEIVNRYRTFFPIDSIFFTKIDETSFPGILINIPVLTGLPV 348

Query: 287 YFLGVGEGI 295
            ++  G+ +
Sbjct: 349 SYISTGQRV 357


>gi|295696133|ref|YP_003589371.1| flagellar biosynthetic protein FlhF [Bacillus tusciae DSM 2912]
 gi|295411735|gb|ADG06227.1| flagellar biosynthetic protein FlhF [Bacillus tusciae DSM 2912]
          Length = 396

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 115/258 (44%), Gaps = 40/258 (15%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVL-------YDVS-------ELIHKMLMP-LSKPFN 104
           V +A+ +V   + +R A+ ++ Q VL       +++S       E++   L P +  P  
Sbjct: 144 VHLAEALVAGGMDERRARALAEQAVLSIPDDGSWEISHTVEQLREIVRSRLQPWVGSPM- 202

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
              +    VI + G  GVGKTT I KL+  +  DAG +V L   DT+R AA+DQL+ +A 
Sbjct: 203 ---AAESRVIALAGPTGVGKTTTIAKLAAIETLDAGRRVALITADTYRIAAVDQLRTYAQ 259

Query: 164 RTSAD----FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
                    +   E+      LA          + D + +DTAGR +        + +M+
Sbjct: 260 IIGIPCFVVYTPEEMRRTVGELA----------EYDRIFVDTAGRNYTQREHALSLREML 309

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           +  K   P   + VL +  +  G++  R VE    VA     + TK D T      + ++
Sbjct: 310 QAAK---PDETYLVLSL--SGKGRDLYRTVEALREVA-IDKYLFTKADETESLASAVDLL 363

Query: 280 VTHKIPVYFLGVGEGIND 297
           +    PV ++  G+G+ D
Sbjct: 364 LAESRPVAYITTGQGVPD 381


>gi|188588736|ref|YP_001920221.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum E3
           str. Alaska E43]
 gi|188499017|gb|ACD52153.1| flagellar biosynthesis protein FlhF [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 403

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 18/189 (9%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I +VG  GVGKTT I KL+ K+S    K V L   DT+R  AI+QLK +A+  +  F   
Sbjct: 210 IALVGPTGVGKTTTIAKLAGKLSLIDKKRVGLITVDTYRIGAIEQLKTYAEIMNIPF--- 266

Query: 173 EIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                   +  +  ++A       DV++IDT GR   N++ ++ +   +      +   P
Sbjct: 267 -----KVVITIKEMEEAINAMTDCDVILIDTTGRSSKNTMQISELRAFV------EKANP 315

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V  V+ ATT    +  +   ++      +I+TK+D T   G L  I+     PV ++ 
Sbjct: 316 DYVSMVISATTKNRDIVSILNGYSDLSYDNVIITKLDETTVYGSLYNIMKISNKPVKYIT 375

Query: 291 VGEGI-NDL 298
            G+ + ND+
Sbjct: 376 TGQNVPNDI 384


>gi|149927787|ref|ZP_01916038.1| flagellar biosynthesis regulator FlhF [Limnobacter sp. MED105]
 gi|149823409|gb|EDM82640.1| flagellar biosynthesis regulator FlhF [Limnobacter sp. MED105]
          Length = 444

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 120/258 (46%), Gaps = 24/258 (9%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           R EL + L +S      A+ +VE+L       D+S  +V   V  +I K L  +  P N 
Sbjct: 170 RGELWNQLTQSGFSPLFARTVVEKL-----PADLSDSQVQDWVMNVIKKNLNVV--PANK 222

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D         +VG  GVGKTT   KL+ +  +      + L   D++R  A DQL+I+  
Sbjct: 223 DIVETGGTFALVGPTGVGKTTTTAKLAARCVVKYGADSLGLITTDSYRIGAQDQLRIYGK 282

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++  +D A L      +   ++  +++IDT G    +S     + +  ++L 
Sbjct: 283 ILGVQVYTAQTHADLAQL------RNTMQRKRLILIDTVGMGQRDS----RVAEQTKILT 332

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             D H    +L  L+AT+    L  V   +   G +G I++K+D   + GG++ +V+ HK
Sbjct: 333 --DSHVKRVLL--LNATSQPETLDDVVRHYKSTGLSGAILSKLDEAIKIGGVLDVVMRHK 388

Query: 284 IPVYFLGVGEGI-NDLEP 300
           + ++++  G+ +  DL P
Sbjct: 389 LALHYIATGQRVPEDLFP 406


>gi|16799764|ref|NP_470032.1| flagellar biosynthesis regulator FlhF [Listeria innocua Clip11262]
 gi|16413141|emb|CAC95921.1| lin0689 [Listeria innocua Clip11262]
          Length = 407

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 16/197 (8%)

Query: 104 NWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           ++D S HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +A
Sbjct: 200 SFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D+   + +   + +  A L            VD ++IDT GR +     ++ I     V+
Sbjct: 258 DKLDVELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVSEIAAYTNVV 314

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVV 280
                   H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++ 
Sbjct: 315 --------HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQ 366

Query: 281 THKIPVYFLGVGEGIND 297
              +PV ++  G+ I +
Sbjct: 367 ETNLPVLYMTDGQNITE 383


>gi|313620090|gb|EFR91597.1| flagellar biosynthesis protein FlhF [Listeria innocua FSL S4-378]
          Length = 385

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 16/197 (8%)

Query: 104 NWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           ++D S HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +A
Sbjct: 200 SFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D+   + +   + +  A L            VD ++IDT GR +     ++ I     V+
Sbjct: 258 DKLDVELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVSEIAAYTNVV 314

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVV 280
                   H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++ 
Sbjct: 315 --------HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQ 366

Query: 281 THKIPVYFLGVGEGIND 297
              +PV ++  G+ I +
Sbjct: 367 ETNLPVLYMTDGQNITE 383


>gi|313624923|gb|EFR94831.1| flagellar biosynthesis protein FlhF [Listeria innocua FSL J1-023]
          Length = 407

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 16/197 (8%)

Query: 104 NWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           ++D S HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +A
Sbjct: 200 SFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D+   + +   + +  A L            VD ++IDT GR +     ++ I     V+
Sbjct: 258 DKLDVELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVSEIAAYTNVV 314

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVV 280
                   H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++ 
Sbjct: 315 --------HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQ 366

Query: 281 THKIPVYFLGVGEGIND 297
              +PV ++  G+ I +
Sbjct: 367 ETNLPVLYMTDGQNITE 383


>gi|87311167|ref|ZP_01093290.1| flagellar biosynthesis protein FlhF [Blastopirellula marina DSM
           3645]
 gi|87286075|gb|EAQ77986.1| flagellar biosynthesis protein FlhF [Blastopirellula marina DSM
           3645]
          Length = 382

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 116/251 (46%), Gaps = 23/251 (9%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WD 106
           L D LI +++   +A ++   L      ++++      D+ + +H+++    +  N   D
Sbjct: 134 LHDELIAAEVAPQIAAQLAGHL------EEIAAVTHERDLRQRLHQIIAATFRIGNDLED 187

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               P  I +VG  GVGKTT I KL+ +      L+V L   DT+R AA+DQL+ +A+  
Sbjct: 188 PRRGPLRIALVGPTGVGKTTTIAKLAARAKFTQKLRVGLITIDTYRIAAVDQLQAYAEIM 247

Query: 166 SADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                V S       A+ + A         D + IDTAGR   +++ +  +  ++R  + 
Sbjct: 248 DLPMQVVSSPSEMRDAVDHLA-------GCDRIFIDTAGRSPRDAVQLQQLHSVLRAAET 300

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                  +   +L ATTG  +L++ E   A    T LI TK+D     G +  ++    +
Sbjct: 301 ------DARYLLLSATTGNRSLQEAERRFASIDPTALIATKLDEVETLGAMFNLINRTTL 354

Query: 285 PVYFLGVGEGI 295
           P+ ++  G+ +
Sbjct: 355 PISYVTHGQDV 365


>gi|322421666|ref|YP_004200889.1| flagellar biosynthetic protein FlhF [Geobacter sp. M18]
 gi|320128053|gb|ADW15613.1| flagellar biosynthetic protein FlhF [Geobacter sp. M18]
          Length = 478

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 14/202 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P ++ VVG  GVGKTT I K++   + +  + V +   D FR  A++QLK +A       
Sbjct: 284 PRIVAVVGPTGVGKTTTIAKIAAMYALNRRVSVAMVTMDNFRVGAVEQLKTYAKIMDLPL 343

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
              E+  ++  L+    + +     D+++IDTAGR   ++  +  +   +     +D   
Sbjct: 344 ---EVAGNSQELSKALARHSDK---DLILIDTAGRSPKDADRLDELKGYLETQTGID--- 394

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              V   L ATT    + Q+         T L+ TK+D +   G ++   + HK P+ + 
Sbjct: 395 ---VYLCLSATTRSREIDQIIDTFGTLPVTKLLFTKLDESRSFGCIVDTCLKHKFPLSYF 451

Query: 290 GVGEGI-NDLEPFVAKDFSAVI 310
             G+ +  D+E   ++  +A++
Sbjct: 452 STGQKVPEDIEVATSRKLAAMV 473


>gi|315453789|ref|YP_004074059.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179]
 gi|315132841|emb|CBY83469.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179]
          Length = 447

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 39/229 (17%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-- 136
           V+V+R      E++ KM+    +  N D +++  ++++VG  GVGKTT + KL+ + S  
Sbjct: 218 VTVKRYF---REVLRKMI--YCRHENLDPNYK-KILMLVGPTGVGKTTTLAKLAARYSKL 271

Query: 137 -DAGLKVMLAAGDTFRSAAIDQLKIWADRT---------SADFVCSEIGSDAAALAYEAF 186
            D   KV +   DT+R  A++QL  +A +          S DF       +  AL Y   
Sbjct: 272 LDRKYKVGILTLDTYRIGAVEQLNWYAKKMKISIETVMDSEDFT-----KEMKALEY--- 323

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
                   DV++IDT G    +   +  + K  +   ++D         VL  TT    L
Sbjct: 324 -------CDVVLIDTTGHSQRDKKKIEALKKFTQNGYKID------TTLVLSLTTKYEDL 370

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           + +    +      LI TK+D +   G L  +V   K P+ +L +G+ +
Sbjct: 371 KDIYNAFSPLDIDSLIFTKLDESQGFGNLFSLVYESKKPISYLCIGQEV 419


>gi|109947671|ref|YP_664899.1| flagellar biosynthesis regulator FlhF [Helicobacter acinonychis
           str. Sheeba]
 gi|109714892|emb|CAJ99900.1| flagellar biosynthesis protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 457

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 26/213 (12%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAA 146
           E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+    +M     KV +  
Sbjct: 236 EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRMLTKKYKVGIIT 292

Query: 147 GDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
            D +R  A++QL  +A++      A     +   +  AL Y           D +++DT 
Sbjct: 293 LDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY----------CDFILVDTT 342

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           G    +   +AG+ K I     +D      V  VL  TT    ++ +     V G   LI
Sbjct: 343 GHSQYDKEKIAGLKKFIDGGYNID------VSLVLSVTTKYEDMKDIYDSFGVLGIDTLI 396

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            TK+D +   G L  +V   + P+ +L +G+ +
Sbjct: 397 FTKLDESRGLGNLFSLVHESQKPISYLSIGQEV 429


>gi|294500919|ref|YP_003564619.1| flagellar biosynthetic protein FlhF [Bacillus megaterium QM B1551]
 gi|294350856|gb|ADE71185.1| flagellar biosynthetic protein FlhF [Bacillus megaterium QM B1551]
          Length = 365

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 18/195 (9%)

Query: 116 VVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           VVG  GVGKTT + KL+ K + +   K+     DT+R +AI+QLK +A   +A       
Sbjct: 174 VVGPTGVGKTTTLAKLAAKCVLEHNQKIAFITTDTYRISAIEQLKTYASILNAPLTICYN 233

Query: 175 GSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           G+D        FK+A  + +  DV+ IDTAGR       +  + K+I   + L       
Sbjct: 234 GAD--------FKKALLETEAYDVIFIDTAGRNFLEQQYVNDLKKIITFQEDL------Q 279

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
              VL  T+  + ++ V    A      LI TK D T   G L+ ++  +     F   G
Sbjct: 280 TFLVLALTSKVSDMKAVYERFASLPVDHLIFTKQDETTHKGSLLNMLYHYGKRAAFTTNG 339

Query: 293 EGI-NDLEPFVAKDF 306
           + +  D+  F  K+F
Sbjct: 340 QDVPEDVSAFKIKEF 354


>gi|167464147|ref|ZP_02329236.1| flagellar biosynthesis regulator FlhF [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382373|ref|ZP_08056280.1| flagellar biosynthesis regulator FlhF-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153726|gb|EFX46101.1| flagellar biosynthesis regulator FlhF-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 460

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 25/242 (10%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-----HVILVVGV 119
           K +EELL +  +     Q   +   EL   +   L   FN D S  P      +I  VG 
Sbjct: 214 KWIEELLNQADSAAAGAQ-TTWTPDELRQSVASQLKDWFNRDGSPSPVSRTAKMIHFVGP 272

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAG----DTFRSAAIDQLKIWADRTSADFVCSEIG 175
            GVGKTT I KL+   ++  LK    AG    DT+R +A++QL+ +A+            
Sbjct: 273 TGVGKTTTIAKLA---AEQVLKHHKKAGFITSDTYRISAVEQLRTYANILGVPLEVVFSP 329

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D    A+EA +      VDV+ +DTAGR     + ++ +  +++     + +       
Sbjct: 330 QD-LPRAFEALQD-----VDVIFMDTAGRNFRKELAVSELNALLQSCGETETYL------ 377

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VL  TT    +R +       G   ++ TKMD TA  G L+ +    ++P  +L  G+ +
Sbjct: 378 VLSLTTKYEDIRVITENFIKFGVDKVLFTKMDETATYGTLVNLKRDFQLPFSYLTDGQNV 437

Query: 296 ND 297
            D
Sbjct: 438 PD 439


>gi|328467250|gb|EGF38330.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes 1816]
          Length = 352

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   
Sbjct: 150 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 207

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           + +   + +  A L            VD ++IDT GR +     ++ I     V+     
Sbjct: 208 ELI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV----- 259

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285
              H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++    +P
Sbjct: 260 ---HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 316

Query: 286 VYFLGVGEGIND 297
           V ++  G+ I +
Sbjct: 317 VLYMTDGQNITE 328


>gi|317181754|dbj|BAJ59538.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori F57]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 30/235 (12%)

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           EL+  R  ++ V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT 
Sbjct: 218 ELMPLRMRENSVTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTT 271

Query: 128 IGKLSKKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAA 180
           + KL+ + S       KV +   D +R  A++QL  +A++      A     +   +  A
Sbjct: 272 LAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEA 331

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           L Y           D +++DT G    +   +AG+ + I     +D      V  VL  T
Sbjct: 332 LEY----------CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVT 375

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           T    ++ +     V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 376 TKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|47095246|ref|ZP_00232857.1| flagellar biosynthesis protein FlhF, putative [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224498763|ref|ZP_03667112.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           Finland 1988]
 gi|254900083|ref|ZP_05260007.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           J0161]
 gi|254911364|ref|ZP_05261376.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           J2818]
 gi|254935691|ref|ZP_05267388.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           F6900]
 gi|47016317|gb|EAL07239.1| flagellar biosynthesis protein FlhF, putative [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258608273|gb|EEW20881.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           F6900]
 gi|293589300|gb|EFF97634.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           J2818]
          Length = 407

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 16/197 (8%)

Query: 104 NWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           ++D S HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +A
Sbjct: 200 SFDLSGHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D+   + +   + +  A L            VD ++IDT GR +     ++ I     V+
Sbjct: 258 DKLDVELI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV 314

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVV 280
                   H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++ 
Sbjct: 315 --------HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQ 366

Query: 281 THKIPVYFLGVGEGIND 297
              +PV ++  G+ I +
Sbjct: 367 ETNLPVLYMTDGQNITE 383


>gi|317180692|dbj|BAJ58478.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori F32]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 30/235 (12%)

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           EL+  R  ++ V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT 
Sbjct: 218 ELMPLRMRENSVTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTT 271

Query: 128 IGKLSKKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAA 180
           + KL+ + S       KV +   D +R  A++QL  +A++      A     +   +  A
Sbjct: 272 LAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEA 331

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           L Y           D +++DT G    +   +AG+ + I     +D      V  VL  T
Sbjct: 332 LEY----------CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVT 375

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           T    ++ +     V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 376 TKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|308184216|ref|YP_003928349.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori SJM180]
 gi|308060136|gb|ADO02032.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori SJM180]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|46906932|ref|YP_013321.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47091644|ref|ZP_00229440.1| flagellar biosynthesis protein FlhF, putative [Listeria
           monocytogenes str. 4b H7858]
 gi|254824039|ref|ZP_05229040.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           J1-194]
 gi|254853115|ref|ZP_05242463.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           R2-503]
 gi|254932039|ref|ZP_05265398.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           HPB2262]
 gi|254992438|ref|ZP_05274628.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           J2-064]
 gi|255521622|ref|ZP_05388859.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           J1-175]
 gi|300764492|ref|ZP_07074485.1| flagellar biosynthesis protein FlhF [Listeria monocytogenes FSL
           N1-017]
 gi|46880198|gb|AAT03498.1| putative flagellar biosynthesis protein FlhF [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47019963|gb|EAL10700.1| flagellar biosynthesis protein FlhF, putative [Listeria
           monocytogenes str. 4b H7858]
 gi|258606465|gb|EEW19073.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           R2-503]
 gi|293583592|gb|EFF95624.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           HPB2262]
 gi|293593268|gb|EFG01029.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           J1-194]
 gi|300514846|gb|EFK41900.1| flagellar biosynthesis protein FlhF [Listeria monocytogenes FSL
           N1-017]
 gi|332311106|gb|EGJ24201.1| Flagellar biosynthesis regulator FlhF [Listeria monocytogenes str.
           Scott A]
          Length = 407

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   
Sbjct: 205 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 262

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           + +   + +  A L            VD ++IDT GR +     ++ I     V+     
Sbjct: 263 ELI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV----- 314

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285
              H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++    +P
Sbjct: 315 ---HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 371

Query: 286 VYFLGVGEGIND 297
           V ++  G+ I +
Sbjct: 372 VLYMTDGQNITE 383


>gi|16802723|ref|NP_464208.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           EGD-e]
 gi|224502014|ref|ZP_03670321.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           R2-561]
 gi|254829338|ref|ZP_05234025.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           N3-165]
 gi|254830328|ref|ZP_05234983.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           10403S]
 gi|284801011|ref|YP_003412876.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           08-5578]
 gi|284994153|ref|YP_003415921.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           08-5923]
 gi|16410070|emb|CAC98759.1| lmo0681 [Listeria monocytogenes EGD-e]
 gi|258601750|gb|EEW15075.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           N3-165]
 gi|284056573|gb|ADB67514.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           08-5578]
 gi|284059620|gb|ADB70559.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           08-5923]
          Length = 407

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 16/197 (8%)

Query: 104 NWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           ++D S HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +A
Sbjct: 200 SFDLSGHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D+   + +   + +  A L            VD ++IDT GR +     ++ I     V+
Sbjct: 258 DKLDVELI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV 314

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVV 280
                   H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++ 
Sbjct: 315 --------HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQ 366

Query: 281 THKIPVYFLGVGEGIND 297
              +PV ++  G+ I +
Sbjct: 367 ETNLPVLYMTDGQNITE 383


>gi|261837845|gb|ACX97611.1| flagellar biosynthesis protein [Helicobacter pylori 51]
          Length = 459

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 230 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 283

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 284 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 335

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 336 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 387

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 388 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 431


>gi|217965221|ref|YP_002350899.1| flagellar biosynthetic protein FlhF [Listeria monocytogenes HCC23]
 gi|217334491|gb|ACK40285.1| flagellar biosynthetic protein FlhF [Listeria monocytogenes HCC23]
 gi|307570220|emb|CAR83399.1| flagellar biosynthesis protein (flagella-associated GTP-binding
           protein), putative [Listeria monocytogenes L99]
          Length = 407

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   
Sbjct: 205 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 262

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           + +   + +  A L            VD ++IDT GR +     ++ I     V+     
Sbjct: 263 ELI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV----- 314

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285
              H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++    +P
Sbjct: 315 ---HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 371

Query: 286 VYFLGVGEGIND 297
           V ++  G+ I +
Sbjct: 372 VLYMTDGQNITE 383


>gi|307718619|ref|YP_003874151.1| flagellar-associated GTP-binding protein [Spirochaeta thermophila
           DSM 6192]
 gi|306532344|gb|ADN01878.1| flagellar-associated GTP-binding protein [Spirochaeta thermophila
           DSM 6192]
 gi|315186368|gb|EFU20128.1| flagellar biosynthetic protein FlhF [Spirochaeta thermophila DSM
           6578]
          Length = 385

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 32/206 (15%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK------VMLAAGDTFRSAAID 156
           +   F+ RP + ++VG  GVGKTT I KL+  M   GL+      V +   D +R AA  
Sbjct: 174 YPLKFTRRPEIFILVGPTGVGKTTTIAKLA-AMYGLGLEDNIRYDVRIITIDNYRIAARQ 232

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAG 214
           Q++ +A+       C E        +YE  ++     + VD++ +DT G+   +   +A 
Sbjct: 233 QIETYANIMGIPVACVE--------SYEELERQVRLFQDVDIIFVDTIGKSPRDYRKLAD 284

Query: 215 IGKMIRVL-KRLDPHAPHSVLQVLDATTGQ----NALRQVEMFHAVAGTTGLIMTKMDGT 269
           +  M+     R   H        L ATT        L+Q E F+     T +++TK+D T
Sbjct: 285 MKDMLEACGSRAQTHL------ALSATTKTADIYTVLQQFEPFNY----TSVVLTKLDET 334

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGI 295
              G +I ++     P+ F+  G+ +
Sbjct: 335 TTVGNIISVLEEKGKPISFITNGQAV 360


>gi|308182582|ref|YP_003926709.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori PeCan4]
 gi|308064767|gb|ADO06659.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori PeCan4]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|217033294|ref|ZP_03438725.1| hypothetical protein HP9810_9g47 [Helicobacter pylori 98-10]
 gi|216944235|gb|EEC23660.1| hypothetical protein HP9810_9g47 [Helicobacter pylori 98-10]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDTKDFAKEIEALEY-------- 334

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|308061764|gb|ADO03652.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori Cuz20]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|317179194|dbj|BAJ56982.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori F30]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|317177224|dbj|BAJ55013.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori F16]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDTKDFAKEIEALEY-------- 334

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|213422086|ref|ZP_03355152.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 97

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 6/101 (5%)

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           DF  S++G     +   A K+A+ K  DVL++DTAGRLH +  +M  I ++   +K    
Sbjct: 3   DFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK---- 58

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             P   L V+DA TGQ+A    + F+     TG+++TK+DG
Sbjct: 59  --PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDG 97


>gi|332673259|gb|AEE70076.1| flagellar biosynthesis protein FlhF [Helicobacter pylori 83]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|315586404|gb|ADU40785.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori 35A]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDTKDFAKEIEALEY-------- 334

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|108562837|ref|YP_627153.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori HPAG1]
 gi|107836610|gb|ABF84479.1| GTP-binding flagellar biosynthesis protein [Helicobacter pylori
           HPAG1]
          Length = 459

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 230 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 283

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 284 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 335

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 336 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 387

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 388 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 431


>gi|210134607|ref|YP_002301046.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori P12]
 gi|210132575|gb|ACJ07566.1| GTP-binding flagellar biosynthesis protein [Helicobacter pylori
           P12]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|317009057|gb|ADU79637.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori India7]
          Length = 457

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 228 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 281

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 282 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 333

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 334 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 385

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 386 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 429


>gi|308063273|gb|ADO05160.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori Sat464]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|317012251|gb|ADU82859.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori
           Lithuania75]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|222053728|ref|YP_002536090.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Geobacter sp. FRC-32]
 gi|221563017|gb|ACM18989.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Geobacter sp. FRC-32]
          Length = 450

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 96/202 (47%), Gaps = 14/202 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P ++  VG  GVGKTT I KL+   + + G +V +   D FR  A++QLK ++       
Sbjct: 255 PRIMATVGPTGVGKTTTIAKLAAMYALNRGARVAMVTTDNFRVGAVEQLKTYSKIMDVPL 314

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
              E+ + A  L  EA     A K D+++IDTAGR   +   +  +   +     ++ + 
Sbjct: 315 ---EVAATAKEL--EAVLAKHADK-DLILIDTAGRSPKDREKLEELKVYLESCPGIETYL 368

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                  + ATT    + ++   +++   T L+ TK+D +   G ++   V ++ P+ + 
Sbjct: 369 ------CISATTRDREMNEIVAQYSLLPITRLLFTKLDESESYGCIVNAQVRNRFPLSYF 422

Query: 290 GVGEGI-NDLEPFVAKDFSAVI 310
             G+ +  D+E   A+  + ++
Sbjct: 423 TTGQKVPEDIEVATARKLANLV 444


>gi|208434358|ref|YP_002266024.1| GTP-binding flagellar biosynthesis protein [Helicobacter pylori
           G27]
 gi|208432287|gb|ACI27158.1| GTP-binding flagellar biosynthesis protein [Helicobacter pylori
           G27]
          Length = 456

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 227 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 280

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 281 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 332

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 333 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 384

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 385 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 428


>gi|188527221|ref|YP_001909908.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori Shi470]
 gi|188143461|gb|ACD47878.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori Shi470]
          Length = 459

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 230 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 283

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 284 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 335

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 336 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 387

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 388 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 431


>gi|183220347|ref|YP_001838343.1| flagellar biosynthesis regulator FlhF [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910464|ref|YP_001962019.1| flagellar biosynthesis regulator FlhF [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775140|gb|ABZ93441.1| Endoflagellar biosynthesis protein, GTP-binding [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778769|gb|ABZ97067.1| Flagellar biosynthesis protein FlhF (Flagella associated
           GTP-binding protein) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 451

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 92/202 (45%), Gaps = 23/202 (11%)

Query: 107 FSHRPH----VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIW 161
           FS  P     V+  VG  G GKTT I KL+ K S   G KV L   D +R AAIDQLK +
Sbjct: 234 FSGTPRGKRKVVFFVGPTGSGKTTSIAKLAAKYSLHMGKKVSLYTTDNYRIAAIDQLKFY 293

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIR 220
           AD     F         AA     +K+   +   +++++DTAG  H  S  +  + +   
Sbjct: 294 ADAMGLPFY--------AAKDLRKWKETILRDGSELILVDTAGYSHRKSENLEKLQEFYE 345

Query: 221 VLKRLDPHAPHSVLQVLDATTGQ-NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           V    D H     + VL +T  + NAL     + +V G   +++TK+D     G ++ + 
Sbjct: 346 VFGEKD-HI--ETILVLSSTVAKDNALAVTNAYESV-GYKRILLTKLDEAEFLGSVVELA 401

Query: 280 VTHKIPVYFLGVGEGINDLEPF 301
            T      FL VG+ +    PF
Sbjct: 402 DTIHREFAFLSVGQDV----PF 419


>gi|289433959|ref|YP_003463831.1| flagellar biosynthesis protein FlhF, putative [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170203|emb|CBH26743.1| flagellar biosynthesis protein FlhF, putative [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 407

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   
Sbjct: 205 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 262

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           + +   + +  A L            VD ++IDT GR +     +  I     V+     
Sbjct: 263 ELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTNVV----- 314

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285
              H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++    +P
Sbjct: 315 ---HPDLTCFTFSSGMKSADVMSILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 371

Query: 286 VYFLGVGEGIND 297
           V ++  G+ I +
Sbjct: 372 VLYMTDGQNITE 383


>gi|254779104|ref|YP_003057209.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori B38]
 gi|254001015|emb|CAX28959.1| Flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Helicobacter pylori B38]
          Length = 457

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 228 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 281

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 282 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 333

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 334 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 385

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 386 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 429


>gi|297379633|gb|ADI34520.1| Flagellar biosynthesis protein flhF [Helicobacter pylori v225d]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 229 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 282

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|315301914|ref|ZP_07872925.1| flagellar biosynthesis protein FlhF [Listeria ivanovii FSL F6-596]
 gi|313629710|gb|EFR97832.1| flagellar biosynthesis protein FlhF [Listeria ivanovii FSL F6-596]
          Length = 407

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   
Sbjct: 205 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 262

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           + +   + +  A L            VD ++IDT GR +     +  I     V+     
Sbjct: 263 ELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTNVV----- 314

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285
              H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++    +P
Sbjct: 315 ---HPDLTCFTFSSGMKSADVMSILPKLAEIPMDGFIITKMDETTRIGDLYTVMQETNLP 371

Query: 286 VYFLGVGEGIND 297
           V ++  G+ I +
Sbjct: 372 VLYMTDGQNITE 383


>gi|288553044|ref|YP_003424979.1| flagellar biosynthesis regulator FlhF [Bacillus pseudofirmus OF4]
 gi|288544204|gb|ADC48087.1| flagellar biosynthesis regulator FlhF [Bacillus pseudofirmus OF4]
          Length = 386

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 17/188 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +I +VG  GVGKTT I K++ + +     KV L   DT+R AA++QLK +A   +     
Sbjct: 192 IINIVGPTGVGKTTTIAKIAAECVLKQQKKVALITTDTYRIAAVEQLKTYAKILNIPI-- 249

Query: 172 SEIGSDAAALAYEAFKQAQ--AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                   A + E FK+A+   K  DV+++D+AGR   N + +  + K+      +D   
Sbjct: 250 ------EVAYSIEDFKKAKDLYKHFDVILVDSAGRNFRNKLYVEELSKV------MDFTE 297

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
               L VL  T+    ++Q+    ++     +I TK D T+  G  I + +   +   ++
Sbjct: 298 EAETLLVLALTSKYEDMKQIIAQFSLLPIKQVIFTKQDETSSYGAYINVPLEFGLGAAYI 357

Query: 290 GVGEGIND 297
             G+ + D
Sbjct: 358 TNGQNVPD 365


>gi|261839260|gb|ACX99025.1| hypothetical protein HPKB_0417 [Helicobacter pylori 52]
          Length = 435

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 206 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 259

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 260 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 311

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 312 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 363

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L +G+ +
Sbjct: 364 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSIGQEV 407


>gi|317010687|gb|ADU84434.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori
           SouthAfrica7]
          Length = 457

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 228 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 281

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 282 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 333

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 334 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 385

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L +G+ +
Sbjct: 386 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSIGQEV 429


>gi|325995699|gb|ADZ51104.1| Flagellar biosynthesis protein [Helicobacter pylori 2018]
          Length = 455

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 30/235 (12%)

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           EL+  R  ++ V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT 
Sbjct: 215 ELMPLRMRENSVTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTT 268

Query: 128 IGKLSKKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAA 180
           + KL+ + S       KV +   D +R  A++QL  +A++      A     +   +  A
Sbjct: 269 LAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEA 328

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           L Y           D +++DT G    +   +AG+ + I     +D      V  VL  T
Sbjct: 329 LEY----------CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVT 372

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           T    ++ +     V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 373 TKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 427


>gi|116872070|ref|YP_848851.1| flagellar biosynthesis regulator FlhF [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|116740948|emb|CAK20068.1| flagellar biosynthesis protein FlhF, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 407

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   
Sbjct: 205 NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 262

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           + +   + +  A L            VD ++IDT GR +     +  I     V+     
Sbjct: 263 ELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTNVV----- 314

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285
              H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++    +P
Sbjct: 315 ---HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 371

Query: 286 VYFLGVGEGIND 297
           V ++  G+ I +
Sbjct: 372 VLYMTDGQNITE 383


>gi|317013855|gb|ADU81291.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori
           Gambia94/24]
          Length = 456

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 227 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 280

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 281 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 332

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 333 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 384

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L +G+ +
Sbjct: 385 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSIGQEV 428


>gi|207091835|ref|ZP_03239622.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 455

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 226 VTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 279

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC----SEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++            +   +  AL Y        
Sbjct: 280 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDIKDFAKEIEALEY-------- 331

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 332 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 383

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 384 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 427


>gi|15645649|ref|NP_207825.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori 26695]
 gi|3913654|sp|O25679|FLHF_HELPY RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|2314179|gb|AAD08078.1| flagellar biosynthesis protein (flhF) [Helicobacter pylori 26695]
          Length = 459

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM++   +  N     +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 230 VTIKRYF---REVLRKMILCCPEDLNL---RQKRILMLVGPTGVGKTTTLAKLAARYSRM 283

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 284 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 335

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 336 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 387

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 388 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 431


>gi|217031642|ref|ZP_03437147.1| hypothetical protein HPB128_21g200 [Helicobacter pylori B128]
 gi|298736648|ref|YP_003729174.1| flagellar biosynthesis protein FlhF [Helicobacter pylori B8]
 gi|216946842|gb|EEC25438.1| hypothetical protein HPB128_21g200 [Helicobacter pylori B128]
 gi|298355838|emb|CBI66710.1| flagellar biosynthesis protein FlhF [Helicobacter pylori B8]
          Length = 458

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ KM++   +  N     +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 229 VTIKRYF---REVLRKMILCCPEDLNL---RQKRILMLVGPTGVGKTTTLAKLAARYSRM 282

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 283 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 334

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 335 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 386

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 387 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 430


>gi|313634393|gb|EFS00982.1| flagellar biosynthesis protein FlhF [Listeria seeligeri FSL N1-067]
 gi|313639082|gb|EFS04062.1| flagellar biosynthesis protein FlhF [Listeria seeligeri FSL S4-171]
          Length = 260

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   
Sbjct: 58  NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 115

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           + +   + +  A L            VD ++IDT GR +     +  I     V+     
Sbjct: 116 ELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTNVV----- 167

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285
              H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++    +P
Sbjct: 168 ---HPDLTCFTFSSGMKSADVMSILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 224

Query: 286 VYFLGVGEGIND 297
           V ++  G+ I +
Sbjct: 225 VLYMTDGQNITE 236


>gi|307637108|gb|ADN79558.1| flagellar biosynthesis protein [Helicobacter pylori 908]
 gi|325997295|gb|ADZ49503.1| Flagellar biosynthesis protein [Helicobacter pylori 2017]
          Length = 455

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 30/235 (12%)

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           EL+  R  ++ V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT 
Sbjct: 215 ELMPLRMRENSVTIKRYF---REVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTT 268

Query: 128 IGKLSKKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAA 180
           + KL+ + S       KV +   D +R  A++QL  +A++      A     +   +  A
Sbjct: 269 LAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEA 328

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           L Y           D +++DT G    +   +AG+ + I     +D      V  VL  T
Sbjct: 329 LEY----------CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVT 372

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           T    ++ +     V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 373 TKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 427


>gi|302389681|ref|YP_003825502.1| flagellar biosynthetic protein FlhF [Thermosediminibacter oceani
           DSM 16646]
 gi|302200309|gb|ADL07879.1| flagellar biosynthetic protein FlhF [Thermosediminibacter oceani
           DSM 16646]
          Length = 374

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 20/202 (9%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158
           ++P  +     P  I+ VG  GVGKTT I KL+   + + G KV L   DT+R  A++QL
Sbjct: 169 TEPIKF-LESEPSKIVFVGPTGVGKTTTIAKLAAFYTLNQGKKVALVTADTYRVGAVEQL 227

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEA---FKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           K + D         EI  +      EA    K+      D+++IDT G    N + +  I
Sbjct: 228 KTYGD-------LLEIPVEVIFEPKEAPILLKKLSG--YDLILIDTMGTSPRNKMQIKKI 278

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +I  +K  + H       V+ ATT    + ++   +       LI TK+D T   G +
Sbjct: 279 KGLIENIKPTETH------MVISATTRTGDIYEILENYKEINYQKLIFTKLDETRTYGLI 332

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           +  + +      +L VG+ + D
Sbjct: 333 LNAIYSTNCSPSYLTVGQNVPD 354


>gi|157099212|gb|ABO33259.2| Hypothetical protein F38A1.8 [Caenorhabditis elegans]
          Length = 468

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 11/127 (8%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKP--- 102
           E++ + LI  ++    A+KI + +++K   K V+   RV  +V   + + L+ L  P   
Sbjct: 337 EKMRENLILKNVASEPAEKICQSVVSKLEGKVVNNFSRVAQEVKTAVRESLVQLLTPKHR 396

Query: 103 -------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                         RP+VI+  GVNGVGK+T + K++  +++   +V++AAGDTFR+ A+
Sbjct: 397 VDILRDVIEAKRDGRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIAAGDTFRAGAV 456

Query: 156 DQLKIWA 162
           +QL+  A
Sbjct: 457 EQLRTHA 463


>gi|295115824|emb|CBL36671.1| Signal recognition particle GTPase [butyrate-producing bacterium
           SM4/1]
          Length = 251

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L ++DA TGQ+A+    MF+   G  G+I+TKMDG  RGG  + I      P+ ++G+
Sbjct: 16  QTLLIVDAMTGQDAVNVAGMFNDKIGIDGVILTKMDGDTRGGAALSIKAVTGKPILYVGM 75

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE ++DLE F     ++ I G  D
Sbjct: 76  GEKLSDLEQFYPDRMASRILGMGD 99


>gi|315281333|ref|ZP_07869980.1| flagellar biosynthesis protein FlhF [Listeria marthii FSL S4-120]
 gi|313615021|gb|EFR88518.1| flagellar biosynthesis protein FlhF [Listeria marthii FSL S4-120]
          Length = 407

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 16/197 (8%)

Query: 104 NWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           ++D S HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +A
Sbjct: 200 SFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D+   + +   + +  A L            VD ++IDT GR +     +  I     V+
Sbjct: 258 DKLEVELI---VATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTDVV 314

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVV 280
                   H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++ 
Sbjct: 315 --------HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQ 366

Query: 281 THKIPVYFLGVGEGIND 297
              +PV ++  G+ I +
Sbjct: 367 ETNLPVLYMTDGQNITE 383


>gi|255028364|ref|ZP_05300315.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes LO28]
          Length = 266

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 15/191 (7%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   +
Sbjct: 65  HR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVE 122

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +   + +  A L            VD ++IDT GR +     ++ I     V+      
Sbjct: 123 LI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV------ 173

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIPV 286
             H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++    +PV
Sbjct: 174 --HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPV 231

Query: 287 YFLGVGEGIND 297
            ++  G+ I +
Sbjct: 232 LYMTDGQNITE 242


>gi|289548938|ref|YP_003473926.1| flagellar biosynthetic protein FlhF [Thermocrinis albus DSM 14484]
 gi|289182555|gb|ADC89799.1| flagellar biosynthetic protein FlhF [Thermocrinis albus DSM 14484]
          Length = 378

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 18/216 (8%)

Query: 84  VLYDVSELIHKMLMPLSKPFN-W-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           VL  ++E I + +  + +P   W DF     VI ++G  GVGKTT + KL+  +  +G +
Sbjct: 150 VLESLTEGIERNVPMIKEPMERWKDF----RVIALLGPTGVGKTTTLAKLAYVLKKSGKR 205

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           + +   D++R  A +QL+ +A      F  ++                +   +D+L++DT
Sbjct: 206 IGVITVDSYRVGAREQLRTYAHLMEIPFRIADTPQKLRECV------GELSSMDLLLVDT 259

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGR   + + +  +      L  ++ +        L A T +  + +     +     GL
Sbjct: 260 AGRSQYDEMRIRELATFFHRLPTVELYL------TLSANTDERIMYEAVEHFSFLPLEGL 313

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           + TK+D TA  G +I +    K+P+     G+ + +
Sbjct: 314 VFTKVDETAYFGNIINVAFRTKLPILCFTNGQRVPE 349


>gi|62719471|gb|AAX93336.1| signal recognition particle protein Ffh [Lactobacillus
           sanfranciscensis]
          Length = 257

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 1/102 (0%)

Query: 215 IGKMIRVLKRLDPHA-PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
           I K++  LK +   A P  +L V+DA TGQNA+   E F+     TG+++TK+DG  RGG
Sbjct: 24  IEKLMNELKAIKQVALPTDILLVVDAMTGQNAVNMAEGFNEALDITGVVLTKLDGDTRGG 83

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             + I      P+ F G GE +++L+ F     ++ I G  D
Sbjct: 84  AALSIKAVTGKPILFTGQGEKMDNLDVFHPDRMASRILGMGD 125


>gi|224437146|ref|ZP_03658127.1| flagellar biosynthesis regulator FlhF [Helicobacter cinaedi CCUG
           18818]
 gi|313143609|ref|ZP_07805802.1| flagellar GTP-binding protein FlhF [Helicobacter cinaedi CCUG
           18818]
 gi|313128640|gb|EFR46257.1| flagellar GTP-binding protein FlhF [Helicobacter cinaedi CCUG
           18818]
          Length = 513

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 23/215 (10%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAA 146
           E++ KM+   S+  N   ++   ++++VG  GVGKTT + KL+ + S   +   +V +  
Sbjct: 294 EVLRKMIYCRSENLN---NNDKKIMMLVGPTGVGKTTTLAKLAARYSLMLNKRYRVGVIT 350

Query: 147 GDTFRSAAIDQLKIWAD--RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            DT+R AA+DQL  +A   + S D V   +  +    A ++ K       D ++IDTAG 
Sbjct: 351 LDTYRLAAVDQLMAYARMMKLSIDTV---VEPEELPKAIDSLKHC-----DYILIDTAGH 402

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
             ++       GK+  +   L+      +  VL        L+      +      LI +
Sbjct: 403 SQHDR------GKLQNIKSYLNTDYKIDISLVLALNAKYEDLKDTYNAFSELNIDTLIFS 456

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298
           K+D +   G +  +V   K P+ +L +G+G+ NDL
Sbjct: 457 KLDESRNFGNMFSLVYDTKKPISYLSIGQGVPNDL 491


>gi|260886654|ref|ZP_05897917.1| flagellar biosynthesis protein FlhF [Selenomonas sputigena ATCC
           35185]
 gi|330839515|ref|YP_004414095.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Selenomonas sputigena ATCC 35185]
 gi|260863797|gb|EEX78297.1| flagellar biosynthesis protein FlhF [Selenomonas sputigena ATCC
           35185]
 gi|329747279|gb|AEC00636.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Selenomonas sputigena ATCC 35185]
          Length = 578

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 13/191 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S +  +  ++G  GVGKTT + K++ + + + G+       DT+R +A++QLK +AD   
Sbjct: 384 SRKRKIAALLGPTGVGKTTTLAKIAAQCVLEKGISTAFITADTYRISAVEQLKTYADILG 443

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                     D    A + F+Q Q     +++IDTAGR  +N   MA + + + V + ++
Sbjct: 444 LPIAIV-YTPDELKEAIQKFRQKQ-----LILIDTAGRSQHNRRQMAELKEFLAVNQNIE 497

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            +       VL ATT     + +    +V     +I TK D T   G ++ I+   ++ +
Sbjct: 498 KYL------VLSATTKNEDAKDIIDKFSVCKPDKVIFTKTDETKSLGIILNILRRKEMRL 551

Query: 287 YFLGVGEGIND 297
            +L  G+ + D
Sbjct: 552 SYLTNGQSVPD 562


>gi|56964014|ref|YP_175745.1| flagellar biosynthesis protein FlhF [Bacillus clausii KSM-K16]
 gi|56910257|dbj|BAD64784.1| flagellar biosynthesis protein FlhF [Bacillus clausii KSM-K16]
          Length = 325

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 30/215 (13%)

Query: 91  LIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGD 148
           L+H     L  +PF      R   ++V G  GVGKTT I KL +K M +    V     D
Sbjct: 115 LMHTFRASLQLQPF---VQKRQQTLIVAGPTGVGKTTTIAKLAAKAMFEENKTVSFITFD 171

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ------AKKVDVLIIDTA 202
           T+R AA++QLK +A                    Y A+ +++       +  D++++DTA
Sbjct: 172 TYRIAAVEQLKTYAHILDCPI-------------YTAYNESELIDLCGRQTADLVLVDTA 218

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GR + +  +   + + IR     D      V+ +  A   ++A   +  F       GLI
Sbjct: 219 GRNYLHEQMPVELVEYIRQSASCD-----LVVALSLAAKAEDARHMLSRFPKEL-VNGLI 272

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           +TK+D TA  G L  ++ +  IPV  +  G+ + +
Sbjct: 273 LTKLDETASLGTLCELLYSEAIPVACVTTGQNVPE 307


>gi|303240267|ref|ZP_07326786.1| flagellar biosynthetic protein FlhF [Acetivibrio cellulolyticus
           CD2]
 gi|302592177|gb|EFL61906.1| flagellar biosynthetic protein FlhF [Acetivibrio cellulolyticus
           CD2]
          Length = 394

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 21/193 (10%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD----R 164
           +P V++ VG  GVGKTT + K++   S +   KV L   DT+R AA++QLK +A+     
Sbjct: 199 KPTVVIFVGPTGVGKTTTLAKIAANYSLNQKKKVGLITADTYRIAAVEQLKTYAEILGMP 258

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
               +  +EI         +A  + Q K  D+++IDTAGR + N      + KM+     
Sbjct: 259 VEVIYSINEIN--------DAKDKYQDK--DIILIDTAGRSYRNKSQFDEL-KML----- 302

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           +D      V  VL  TTG    R +   +       LI TK+D T   G ++        
Sbjct: 303 VDASHADEVFLVLSTTTGVRNCRDILASYDFLKDYKLIFTKLDETPALGIILNARRLTNR 362

Query: 285 PVYFLGVGEGIND 297
            + ++ +G+ + D
Sbjct: 363 NLSYVTIGQSVPD 375


>gi|258592483|emb|CBE68792.1| putative Flagellar biosynthesis protein flhF (Flagella-associated
           GTP-binding protein) [NC10 bacterium 'Dutch sediment']
          Length = 388

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 115/258 (44%), Gaps = 46/258 (17%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD--------VSELIHKML------MPLSKPFNWD 106
           A+  + VEE + +R+   VSV+  L +        VS L+ ++L      +P+ K  N  
Sbjct: 132 ALLSQEVEEGVARRWV--VSVRDRLREAASPDSTPVSALLAEVLAREIVGLPVPKAGNGR 189

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
                 V+ +VG  GVGKTT I KL+       G +V L   DT+R A   QLK +A+  
Sbjct: 190 -----RVVALVGPTGVGKTTTIAKLAAGCRFREGKRVALITTDTYRIAGAQQLKNYAELI 244

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
              +  + + +D         K+A A  +  DV+ IDT GR                 L+
Sbjct: 245 GLPYCVAPLPAD--------LKRALAGDRDADVIFIDTVGRSARRK----------DQLE 286

Query: 224 RLDPHAP----HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
            L  +A     + V  VL ATT +  L Q    +   G + +I TK+D TA  G +    
Sbjct: 287 ELATYAGSDDGYEVHLVLSATTKRADLLQAVEAYRPLGFSSIIATKLDETATVGPVCEAA 346

Query: 280 VTHKIPVYFLGVGEGIND 297
           +T  +P+ +L  G+ + D
Sbjct: 347 LTAAVPISYLTTGQEVPD 364


>gi|312882108|ref|ZP_07741858.1| flagellar biosynthesis regulator FlhF [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370244|gb|EFP97746.1| flagellar biosynthesis regulator FlhF [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 478

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 32/209 (15%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAA 154
           +P++K    D   R  V+ ++G  GVGKTT + KL+ +  M      V L + DT+R  A
Sbjct: 254 IPIAK---QDILKRGGVVALLGPTGVGKTTTVAKLAARAAMEFGSDNVALVSTDTYRIGA 310

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN 208
            +QL I+          ++  S+ A + Y      Q +   ++++DTAG      RL   
Sbjct: 311 HEQLSIYGRIMGCPVKVAKDSSELADVIY------QLRNRRLVLVDTAGMGQRDVRLSEQ 364

Query: 209 -SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKM 266
              LM   G++I           HS L VL AT  +  L++ +E F  +   +G IMTK+
Sbjct: 365 LDTLMQESGEII-----------HSYL-VLPATAQRKVLQETIEHFKRIP-LSGCIMTKL 411

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           D +   G  + +VV + +PV ++  G+ +
Sbjct: 412 DESLSLGEFVSVVVQNSLPVAYIANGQRV 440


>gi|255024776|ref|ZP_05296762.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           J1-208]
          Length = 200

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 15/191 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   
Sbjct: 23  NHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 80

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           + +   + +  A L            VD ++IDT GR +     ++ I     V+     
Sbjct: 81  ELI---VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV----- 132

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVTHKIP 285
              H  L     ++G  +   + +   +A     G I+TKMD T R G L  ++    +P
Sbjct: 133 ---HPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLP 189

Query: 286 VYFLGVGEGIN 296
           V ++  G+ I 
Sbjct: 190 VLYMTDGQNIT 200


>gi|253702436|ref|YP_003023625.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Geobacter sp. M21]
 gi|251777286|gb|ACT19867.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Geobacter sp. M21]
          Length = 481

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 19/191 (9%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P ++ VVG  GVGKTT I K++   + +  + V +   D FR  A++QLK +A       
Sbjct: 286 PRIVAVVGPTGVGKTTTIAKIAALYALNRRVSVAMVTMDNFRVGAVEQLKTYAKIMDLPL 345

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
              E+  ++  L     + +     D+++IDTAGR   +S       ++  +   L+ H 
Sbjct: 346 ---EVAGNSQELGKALARHSDK---DLIMIDTAGRSPKDS------ERLDELKGYLEAHN 393

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGT---TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              V   L ATT     R+++   A  GT   T L+ TK+D +   G ++   + HK+P+
Sbjct: 394 GIDVYLCLSATT---RTREIDEIIATFGTLPITKLLFTKLDESRSLGCIVDTYLKHKVPL 450

Query: 287 YFLGVGEGIND 297
            +   G+ + +
Sbjct: 451 SYFSTGQKVPE 461


>gi|188997551|ref|YP_001931802.1| GTP-binding signal recognition particle SRP54 G- domain
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932618|gb|ACD67248.1| GTP-binding signal recognition particle SRP54 G- domain
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 399

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 133/283 (46%), Gaps = 32/283 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           +   ++  KE IT+  + + LD      L +LLI+ D+ + VA++IV      R A  + 
Sbjct: 120 YYDNNITYKE-ITEEFTGKALD------LINLLIQKDVELDVAKEIV------RNACGLE 166

Query: 81  VQRVLYDVSELIHK--MLMPLSKPFNWD---F--SHRPHVILVVGVNGVGKTTVIGKLSK 133
           +     D+    ++  ++  + K F +    F  S R  V+  +G  GVGKTT + K++ 
Sbjct: 167 MGSNKLDLKHFTYRESLIEGIEKSFIFKGDIFKDSDRRRVVAFLGPTGVGKTTNLFKVAS 226

Query: 134 KMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K+  +   KV + + DTF++ A DQ + + +     F   +I SD   L  E        
Sbjct: 227 KLILEENKKVAVVSIDTFKAGAGDQARSYCNILGIPF---QILSDPKKLR-ETVDDLDF- 281

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            VDV++IDT GR H +   +  I + +R++  ++      ++ V      + +   ++ +
Sbjct: 282 -VDVILIDTVGRSHYDHWKLGEIKETLRLIDEIE-----YMMVVSCNWKNKESYNLIQKY 335

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
                 + L  TK+D TA  G ++ +    K+P+ ++  G+ +
Sbjct: 336 RKFFNISYLFFTKIDETAYPGTILNLAYKTKLPLTYISTGQNV 378


>gi|157692320|ref|YP_001486782.1| flagellar biosynthesis regulator FlhF [Bacillus pumilus SAFR-032]
 gi|157681078|gb|ABV62222.1| flagellar biosynthesis protein FlhF [Bacillus pumilus SAFR-032]
          Length = 371

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 115/263 (43%), Gaps = 46/263 (17%)

Query: 41  LDDGVREE-LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           LDD +R+E L+ LL +  +     QK +E+LLT       S   ++              
Sbjct: 133 LDDAIRDECLKGLLTKGAVKEEQIQKELEQLLTDMLPSHTSDDPMI-------------- 178

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158
                     R   I++ G  G GKTT I KL+ K +     K+     DT+R AAI+QL
Sbjct: 179 ----------RSKYIVLFGSTGAGKTTTIAKLAAKTAIQKQKKIAFITTDTYRIAAIEQL 228

Query: 159 KIWADRTSADF-VCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGI 215
           K +A+  +A   VC          + E F +AQ   K+ D + +DTAGR       +  +
Sbjct: 229 KTYAELLNAPLEVC---------YSREDFVKAQETFKEYDHIFVDTAGRNFKEEAYIKEL 279

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
             +I   + +      S L V+ AT+  Q+    V+ F  V+     I TK+D T   G 
Sbjct: 280 TDIIPFDESI-----QSFL-VMSATSKYQDMKAMVKRFEHVS-IDQFIFTKVDETDTMGT 332

Query: 275 LIPIVVTHKIPVYFLGVGEGIND 297
           +  I+   +I + FL  G+ + +
Sbjct: 333 IFQIIADSQIGLGFLTNGQNVPE 355


>gi|172057868|ref|YP_001814328.1| GTP-binding signal recognition particle [Exiguobacterium sibiricum
           255-15]
 gi|171990389|gb|ACB61311.1| GTP-binding signal recognition particle SRP54 G- domain
           [Exiguobacterium sibiricum 255-15]
          Length = 356

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 22/189 (11%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I+V G  GVGKTT + KL+         KV L   DT+R +A++QL+ +AD         
Sbjct: 165 IMVTGPTGVGKTTTLAKLAAYYRLTKQQKVGLITTDTYRISAVEQLRTYAD--------- 215

Query: 173 EIGSDAAALAY--EAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            I      +AY  + F+QA+      DV++IDTAGR    + L AG    +  LK+    
Sbjct: 216 -IIDIPLRVAYDLQEFEQAKVDLSDCDVILIDTAGR----NFLDAG---YVEQLKKRHDF 267

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           +   V  VL  T+    L Q++        +G I TK D T     +  +    ++P++ 
Sbjct: 268 SETDVFLVLSLTSKYRDLEQIQQRFDQVPLSGFIFTKADETIDLWSIYGLTKKTQLPLFC 327

Query: 289 LGVGEGIND 297
           L  G+ + +
Sbjct: 328 LTTGQEVPE 336


>gi|42528186|ref|NP_973284.1| flagellar biosynthetic protein FlhF [Treponema denticola ATCC
           35405]
 gi|41819456|gb|AAS13203.1| flagellar biosynthetic protein FlhF [Treponema denticola ATCC
           35405]
          Length = 446

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 145/325 (44%), Gaps = 49/325 (15%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLK----------LKEGITDIISSRRLDDGVREELED- 51
           ++++A + + +I KL +  +S+ +K          L E +  ++   RL +   +E E+ 
Sbjct: 102 SEEMAEKMMPYIEKL-ENQSSSPIKTDIESKEFKNLAETVERLVEEIRLKNSPSQEHENI 160

Query: 52  -----LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM--------- 97
                LL  +D      + I E++     +K++S+   L D  EL+ K ++         
Sbjct: 161 SKIAALLEENDFTAKYIRSIKEKI-----SKNLSLAE-LNDF-ELVQKKVLDWIASSIQI 213

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-------KKMSDAGLKVMLAAGDTF 150
            L +  N D S +  +I +VG  G+GKTT + KL+        K+    L V +   D +
Sbjct: 214 KLEETNNDDPSKKQKLIALVGPTGIGKTTTLAKLAAYYILAVSKLEKRSLDVRVITIDQY 273

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R  A  Q+K + +      +   I +D   L    +        D++ IDT GR   +  
Sbjct: 274 RIGAAFQIKKYCEHMGIPLI---IATDP--LDLHKYLDLYKDSADIICIDTTGRSPTDP- 327

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
               I +M +    ++P    + L V   T   + +  ++ + +V   + LI+TK+D TA
Sbjct: 328 --EKILEMQKYFDEIEPGRIETHLVVSAVTKAADIIEIIKQY-SVFNFSSLIITKLDETA 384

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGI 295
             G +I ++  +KIPV ++  G+ +
Sbjct: 385 HVGSIISVLDEYKIPVAYITEGQTV 409


>gi|325474609|gb|EGC77795.1| flagellar biosynthetic protein FlhF [Treponema denticola F0402]
          Length = 446

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 145/325 (44%), Gaps = 49/325 (15%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLK----------LKEGITDIISSRRLDDGVREELED- 51
           ++++A + + +I KL +  +S+ +K          L E +  ++   RL +   +E E+ 
Sbjct: 102 SEEMAEKMMPYIEKL-ENQSSSPIKTDIESKEFKNLAETVERLVEEIRLKNSPSQEHENI 160

Query: 52  -----LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM--------- 97
                LL  +D      + I E++     +K++S+   L D  EL+ K ++         
Sbjct: 161 SKIAALLEENDFTAKYIRSIKEKI-----SKNLSLAE-LNDF-ELVQKKVLDWIASSIQI 213

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-------KKMSDAGLKVMLAAGDTF 150
            L +  N D S +  +I +VG  G+GKTT + KL+        K+    L V +   D +
Sbjct: 214 KLEETNNDDPSKKQKLIALVGPTGIGKTTTLAKLAAYYILAVSKLEKRSLDVRVITIDQY 273

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R  A  Q+K + +      +   I +D   L    +        D++ IDT GR   +  
Sbjct: 274 RIGAAFQIKKYCEHMGIPLI---IATDP--LDLHKYLDLYKDSADIICIDTTGRSPTDP- 327

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
               I +M +    ++P    + L V   T   + +  ++ + +V   + LI+TK+D TA
Sbjct: 328 --EKILEMQKYFDEIEPGRIETHLVVSAVTKAADIIEIIKQY-SVFNFSSLIITKLDETA 384

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGI 295
             G +I ++  +KIPV ++  G+ +
Sbjct: 385 HVGSIISVLDEYKIPVAYITEGQTV 409


>gi|297690657|ref|XP_002822734.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           [Pongo abelii]
          Length = 568

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 11/141 (7%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKML 96
           SR   + V +++ D LI  ++   +A ++ E +  K   K + +   V   V + + + L
Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393

Query: 97  MPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + + +P           +     RP+V+   GVNGVGK+T + K+S  + + G  V++AA
Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453

Query: 147 GDTFRSAAIDQLKIWADRTSA 167
            DTFR+ A++QL+    R SA
Sbjct: 454 CDTFRAGAVEQLRTHTRRLSA 474


>gi|332799196|ref|YP_004460695.1| flagellar biosynthetic protein FlhF [Tepidanaerobacter sp. Re1]
 gi|332696931|gb|AEE91388.1| flagellar biosynthetic protein FlhF [Tepidanaerobacter sp. Re1]
          Length = 383

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 14/194 (7%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           + S   ++I  VG  GVGKTT I KL+   S     KV +   DTFR  AI+QL+++ D 
Sbjct: 181 ELSKEKNIIAFVGPTGVGKTTTIAKLAAHFSLYKNKKVAMITADTFRVGAIEQLRLYGDL 240

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                       D   +       A     D+L+IDT G   NN +    I K+  +L  
Sbjct: 241 LEIPVFVVYSFEDVKTIL------ADTNDYDILLIDTMGFSPNNRM---QIKKIKGLLDY 291

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI-PIVVTHK 283
           ++P+  H V+    AT  Q+ +  +  +  +     +++TK+D T   G L+  I +++ 
Sbjct: 292 INPNEIHIVISA--ATKNQDLVDILNNYKELQ-YKKIVVTKLDETKCYGMLLNAISISNG 348

Query: 284 IPVYFLGVGEGIND 297
             + +L +G+ + D
Sbjct: 349 CKLSYLTMGQNVPD 362


>gi|215431868|ref|ZP_03429787.1| cell division protein ftsY [Mycobacterium tuberculosis EAS054]
 gi|289755034|ref|ZP_06514412.1| cell division protein ftsY [Mycobacterium tuberculosis EAS054]
 gi|289695621|gb|EFD63050.1| cell division protein ftsY [Mycobacterium tuberculosis EAS054]
          Length = 280

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 7/131 (5%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLM 97
           D+   +++ED L+ +D+G A    +V +L ++  + +V  +     VL DV  LI+++  
Sbjct: 151 DEDSWQDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDV--LINELQP 208

Query: 98  PLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            + +       +  P V+LVVGVNG GKTT +GKL++ +   G +V+L A DTFR+AA D
Sbjct: 209 GMDRSIRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAAD 268

Query: 157 QLKIWADRTSA 167
           QL+ WA R  A
Sbjct: 269 QLQTWAARVGA 279


>gi|291288735|ref|YP_003505551.1| flagellar biosynthetic protein FlhF [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885895|gb|ADD69595.1| flagellar biosynthetic protein FlhF [Denitrovibrio acetiphilus DSM
           12809]
          Length = 395

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 120/251 (47%), Gaps = 17/251 (6%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E  +L++++ +   +A K ++++  KR +  ++  ++   V++L+ + L+P+ K +    
Sbjct: 136 EFYNLMVKNGVDEIIAYKFLKKI-EKRASHGLTPNQIRNLVTQLMSE-LIPVEKDYFSSI 193

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           + +  V+ +VG  GVGKTT I K++  +S      V L   D FR  A++QL+ +A+   
Sbjct: 194 NKK--VLALVGPTGVGKTTTIAKIAANLSLKMNKSVALITVDNFRIGAVEQLRTYAEIVD 251

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                +   ++   + YE       +  D + +D+ GR   +    + IG +++ ++ + 
Sbjct: 252 IPLRVASTPTELERIIYE------CRDYDYVFVDSMGRSQFDD---SQIGDLLKFME-VS 301

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P     V  V+  ++    +      ++      LI TK+D T   G L+ + +  K P+
Sbjct: 302 PLV--KVALVMSMSSNHQEMADTYDRYSKLLPEYLIFTKLDETKYFGPLVNLPIKKKTPL 359

Query: 287 YFLGVGEGIND 297
             L  G+ + D
Sbjct: 360 MLLAGGQNVPD 370


>gi|313681604|ref|YP_004059342.1| flagellar biosynthetic protein flhf [Sulfuricurvum kujiense DSM
           16994]
 gi|313154464|gb|ADR33142.1| flagellar biosynthetic protein FlhF [Sulfuricurvum kujiense DSM
           16994]
          Length = 422

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 103/239 (43%), Gaps = 35/239 (14%)

Query: 91  LIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVML 144
           L+ KM+     P   + + RP    VI++VG  GVGKTT I KL+ + S   +   KV L
Sbjct: 200 LMRKMI-----PVRLESAPRPGSKKVIMLVGPTGVGKTTSIAKLAARFSYLLEKKYKVGL 254

Query: 145 AAGDTFRSAAIDQLKIWAD------RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
              DT+R  A++QL  +A        T  D    E  S   AL Y           D ++
Sbjct: 255 VVLDTYRIGAVEQLMQYARMMKLGIETVVD--PPEFSSALNALRYS----------DYIL 302

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDT G   ++      I K+   L+  +      V+ V+ ++   + L+      A  G 
Sbjct: 303 IDTMG---SSPYDKGKIEKIYECLRDNNTDYTVDVVLVMPSSIKYDDLKATYENFAPLGI 359

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
             ++ TK+D T   G +  +V   K+P+ +  VG+ + +       DF   +  CL  G
Sbjct: 360 DTMMFTKLDETRGFGNIFSLVYETKVPISYFSVGQEVPEDLVVATSDF---LVDCLMNG 415


>gi|15611457|ref|NP_223108.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori J99]
 gi|12230112|sp|Q9ZM34|FLHF_HELPJ RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|4154928|gb|AAD05976.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
          Length = 455

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD- 137
           V+++R      E++ K++  L +P + +   +  ++++VG  GVGKTT + KL+ + S  
Sbjct: 226 VTIKRYF---REVLRKII--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRM 279

Query: 138 --AGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQA 191
                KV +   D +R  A++QL  +A++      A     +   +  AL Y        
Sbjct: 280 LAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEY-------- 331

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DT G    +   +AG+ + I     +D      V  VL  TT    ++ +  
Sbjct: 332 --CDFILVDTTGHSQYDKEKIAGLKEFIDGGYNID------VSLVLSVTTKYEDMKDIYD 383

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
              V G   LI TK+D +   G L  +V   + P+ +L VG+ +
Sbjct: 384 SFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEV 427


>gi|291538514|emb|CBL11625.1| flagellar biosynthetic protein FlhF [Roseburia intestinalis XB6B4]
          Length = 330

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 16/163 (9%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HR 110
           +L R+ +   V +K V ++L +      S   V   +S +  KM++ L +P     S  +
Sbjct: 160 MLYRTLLENEVNEKYVNQILDEAEKVMHSGSSVDAILSNVYQKMILKLGQPDTICVSGKK 219

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I  VG  GVGKTT I K++ K   + G+K+     DT+R AA +QL+++A+   A  
Sbjct: 220 PRIIFFVGPTGVGKTTTIAKIASKYKLEMGMKIAFLTADTYRIAATEQLRVYANILDAPM 279

Query: 170 VCSEIGSDAAALAYEAFKQAQA----KKVDVLIIDTAGRLHNN 208
                     ++ Y A +   A     + D++ +DTAG  H N
Sbjct: 280 ----------SIIYSAEEMNAAIERVSEYDLIFVDTAGFSHKN 312


>gi|304404265|ref|ZP_07385927.1| flagellar biosynthetic protein FlhF [Paenibacillus curdlanolyticus
           YK9]
 gi|304347243|gb|EFM13075.1| flagellar biosynthetic protein FlhF [Paenibacillus curdlanolyticus
           YK9]
          Length = 451

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 21/207 (10%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD-- 168
            VI  VG  GVGKTT I KL+ + +   G KV     DT+R AA+DQL+ +A+  +    
Sbjct: 255 RVIYFVGPTGVGKTTTIAKLAAEQTIKYGRKVGFITSDTYRIAAVDQLRTYANILNVPME 314

Query: 169 --FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             F  +E+          AF+Q Q +  +++++DTAGR + + + ++ +  ++       
Sbjct: 315 VVFSPNEVP--------RAFEQLQEQ--EMILMDTAGRNYRSELHVSEVNSLM-----YH 359

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             A  S   VL  T     +  V       G    + TK+D T   G L+ + +   +  
Sbjct: 360 KQAEGSAYLVLSMTGRTKDMAVVAERFLPYGIRNAVFTKLDETNVYGMLMNLTLEFGLMP 419

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITG 312
            ++  G+ + +D+ PF A+ + A++ G
Sbjct: 420 AYVTSGQTVPDDIAPFNAETYVALLLG 446


>gi|226225719|ref|YP_002759825.1| putative flagellar biosynthesis protein FlhF [Gemmatimonas
           aurantiaca T-27]
 gi|226088910|dbj|BAH37355.1| putative flagellar biosynthesis protein FlhF [Gemmatimonas
           aurantiaca T-27]
          Length = 292

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 23/204 (11%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           RP+ I +VG  G GKTT   KL+  + M  A    +L   DT+R   ++QL  +A+    
Sbjct: 85  RPYCIALVGPTGAGKTTTAAKLAVRRGMFGAARPGLLTI-DTYRVGGMEQLATYAELADV 143

Query: 168 DF--VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
            F  V  E   DAA        +  ++  D++I+DT GR    S   A + +  R L  L
Sbjct: 144 PFEVVYDEKEVDAA-------MKRLSQTCDIVIVDTPGR----SPASAELTERWRSL--L 190

Query: 226 DPHAPHSVLQVLDATTGQNAL----RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           D  AP  V  V+ AT   +      R      A  GTT L+++K+D   R  G+  + ++
Sbjct: 191 DTIAPDEVHLVIPATLRADLAVDIGRAYRGTRAHCGTTHLLLSKLDEVPRETGVTDLALS 250

Query: 282 HKIPVYFLGVGEGIN-DLEPFVAK 304
            ++P  ++  G+ +  DL+P VA+
Sbjct: 251 LEMPTRWIADGQDVPADLKPGVAR 274


>gi|221105682|ref|XP_002169513.1| PREDICTED: similar to signal recognition particle 54kDa, partial
           [Hydra magnipapillata]
 gi|221106571|ref|XP_002170252.1| PREDICTED: similar to signal recognition particle 54kDa, partial
           [Hydra magnipapillata]
          Length = 83

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%)

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           +P +++ V+DA+ GQ    Q   F        +I+TK+DG A+GGG +  V     P+ F
Sbjct: 1   SPDNIIFVMDASIGQACEAQARAFKEKVDVASVIITKLDGHAKGGGALSAVAGTSSPIIF 60

Query: 289 LGVGEGINDLEPFVAKDF 306
           +G GE I+D EPF  + F
Sbjct: 61  IGTGEHIDDFEPFKTQPF 78


>gi|87119468|ref|ZP_01075365.1| flagellar biosynthesis protein FlhF [Marinomonas sp. MED121]
 gi|86164944|gb|EAQ66212.1| flagellar biosynthesis protein FlhF [Marinomonas sp. MED121]
          Length = 427

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 31/217 (14%)

Query: 117 VGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +G  GVGKTT IGK++ +  +      V+L   DT+R AA +QL+ +    +   V    
Sbjct: 225 MGPTGVGKTTTIGKIAAQHVLKHGSDSVVLVTTDTYRIAAHEQLRTFGRILNVPVVVVNE 284

Query: 175 GSDAAAL--AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
            SD   +   Y  F         ++++DTAG    +      + + + ++KR   H+   
Sbjct: 285 YSDLNEVLDKYSNFS--------LVLVDTAGMNPRDR----NLERQLLMMKRA--HSSLK 330

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L VL  T+ +  L+ V   +A     G +++K+D +A  G  + +V+  ++PV ++  G
Sbjct: 331 KLLVLPCTSQRQVLKTVVDVYAQVQLDGCVLSKLDESASLGEAVSVVIEERLPVVYIADG 390

Query: 293 EGI-NDLEP-----------FVAKDFSAVITGCLDYG 317
           + I +D++P           + A+ +S + +  L YG
Sbjct: 391 QRIPDDIQPARAHNIISRAVYTAEQYSHIYSS-LKYG 426


>gi|325971102|ref|YP_004247293.1| GTP-binding signal recognition particle SRP54 G- domain
           [Spirochaeta sp. Buddy]
 gi|324026340|gb|ADY13099.1| GTP-binding signal recognition particle SRP54 G- domain
           [Spirochaeta sp. Buddy]
          Length = 330

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 12/188 (6%)

Query: 115 LVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           + VG  GVGKTT + K +  + +  G KV L + DT R+ +++Q++ +A   +     + 
Sbjct: 129 IFVGAAGVGKTTTLVKTALYLRAQKGKKVALLSFDTQRTGSVEQIRQFAHEFALPLYEA- 187

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             SD +ALA      A  K  D +++DT+GR   +  L A +  M+ VL    P    S 
Sbjct: 188 --SDESALAGLL---ASLKGFDHILVDTSGRSAKDEELKAFLDGMLAVL----PFQGCST 238

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             V+ A+  ++ L   +   A      +I TK+D T+  G L+  V    +P+ FL  G+
Sbjct: 239 YLVVSASHKESDLLAQQQLFAKQRVKAIICTKLDETSGIGNLLSFVQKSDVPLLFLADGQ 298

Query: 294 GI-NDLEP 300
            I  D  P
Sbjct: 299 TIPQDFHP 306


>gi|315179522|gb|ADT86436.1| flagellar biosynthesis regulator FlhF [Vibrio furnissii NCTC 11218]
          Length = 512

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 294 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 353

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 354 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 407

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 408 EII-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 454

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           + +VV + +PV ++  G+ +
Sbjct: 455 VSVVVQNSLPVAYIANGQRV 474


>gi|222100642|ref|YP_002535210.1| Flagellar biosynthesis protein FlhF [Thermotoga neapolitana DSM
           4359]
 gi|221573032|gb|ACM23844.1| Flagellar biosynthesis protein FlhF [Thermotoga neapolitana DSM
           4359]
          Length = 382

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 14/158 (8%)

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA-FKQAQAKKVDVLII 199
           +V +   DT+R AA +QLK +A+         +I    A    EA ++    K  DVL+I
Sbjct: 207 RVAILTLDTYRIAAAEQLKTYAE-------IMDIPMKIAYTPKEAEYEMMALKDYDVLLI 259

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGR H N + M+ +  +   +K      P+    V+      + ++++    +V   T
Sbjct: 260 DTAGRSHQNDLQMSEVKALAEAVK------PNITFLVVAMNYKLDDMKKILEKFSVVRPT 313

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            LI+TKMD T+  G  + I     IP+ F+  G+ + D
Sbjct: 314 HLILTKMDETSVYGTFVNISEITDIPIAFVTNGQRVPD 351


>gi|308535387|ref|YP_002140554.2| flagellar biogenesis protein FlhF [Geobacter bemidjiensis Bem]
 gi|308052732|gb|ACH40758.2| flagellar biogenesis protein FlhF [Geobacter bemidjiensis Bem]
          Length = 484

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 20/205 (9%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P ++ VVG  GVGKTT I K++   + +  + V +   D FR  A++QLK +A       
Sbjct: 289 PRIVAVVGPTGVGKTTTIAKIAALYALNRRVSVAMVTMDNFRVGAVEQLKTYAKIMDLPL 348

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
              E+  ++  L     + +     D+++IDTAGR   ++       ++  +   L+ H 
Sbjct: 349 ---EVAGNSQELGKALARHSDK---DLIMIDTAGRSPKDT------ERLDELKGYLEAHN 396

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGT---TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              V   L ATT     R+++   A  GT   T L+ TK+D +   G ++   + HK+P+
Sbjct: 397 GIDVYLCLSATT---RTREIDEIIATFGTLPITKLLFTKLDESRSLGCIVDTYLKHKVPL 453

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVI 310
            +   G+ +  D+E   ++  ++++
Sbjct: 454 SYFSTGQKVPEDIEVASSRKLASLV 478


>gi|114320143|ref|YP_741826.1| GTP-binding signal recognition particle [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226537|gb|ABI56336.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 466

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 15/190 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ +VG  GVGKTT + KL+ +  +     +V L + DTFR  A DQL+ +A        
Sbjct: 250 VMALVGPTGVGKTTTVAKLAARFALKHGRDQVALVSTDTFRIGAQDQLRNFASILQVPVY 309

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +  G + A +     +    K++  +++DTAG    +  L      +    +RL     
Sbjct: 310 NAASGEELAGV----LENLDDKRL--VLVDTAGMSQRDVRLAEQFTALRESSRRL----- 358

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                VL A T  + L +     AVA   G I TK+D     GGL+ + +  ++P+ +LG
Sbjct: 359 -RTCLVLSAATQLSTLTESMRAFAVAEPQGCIFTKLDEATSLGGLLTVALRSRLPIAWLG 417

Query: 291 VGEGI-NDLE 299
            G+ +  DLE
Sbjct: 418 TGQRVPEDLE 427


>gi|260767646|ref|ZP_05876581.1| flagellar biosynthesis protein FlhF [Vibrio furnissii CIP 102972]
 gi|260617155|gb|EEX42339.1| flagellar biosynthesis protein FlhF [Vibrio furnissii CIP 102972]
          Length = 517

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 299 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 358

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 359 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 412

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 413 EII-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 459

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           + +VV + +PV ++  G+ +
Sbjct: 460 VSVVVQNSLPVAYIANGQRV 479


>gi|167630312|ref|YP_001680811.1| GTP-binding signal recognition particle protein, putative
           [Heliobacterium modesticaldum Ice1]
 gi|167593052|gb|ABZ84800.1| GTP-binding signal recognition particle protein, putative
           [Heliobacterium modesticaldum Ice1]
          Length = 434

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 22/216 (10%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIW 161
           F  D      V+++VG  GVGKTT I KL+   S     KV L   DT+R AA++QLK +
Sbjct: 231 FLPDSGKSQEVVMMVGPTGVGKTTTIAKLAATFSIVNRRKVGLITADTYRIAAVEQLKTF 290

Query: 162 AD--RTSADFVCSEIGSDAAALAYEAFKQAQAKKVD--VLIIDTAGRLHNNSILMAGIGK 217
            D      D V +           +A + A  +  D  +L++DTAGR H N   +  +  
Sbjct: 291 GDIIGVPVDVVFTP----------QALRSAIERHRDKELLLVDTAGRSHKNDSQLEELAA 340

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            +           HS+L VL ATT    L Q+    +       + TK+D T   G ++ 
Sbjct: 341 YVE-----QSQPSHSIL-VLSATTKFKDLLQITEGFSRMNIDRYLFTKLDETNHYGSILN 394

Query: 278 IVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           ++      + ++  G+ + +D+E       S +I G
Sbjct: 395 LIHRTGKSLSYITTGQNVPDDMEVADPNKLSNLIYG 430


>gi|149182525|ref|ZP_01860998.1| flagellar biosynthesis regulator FlhF [Bacillus sp. SG-1]
 gi|148849785|gb|EDL63962.1| flagellar biosynthesis regulator FlhF [Bacillus sp. SG-1]
          Length = 384

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 125/286 (43%), Gaps = 30/286 (10%)

Query: 23  STSLKLKEGITD---IISSRRLDDGVREELEDL------LIRSDIGVAVAQKIVEELLTK 73
           ++SL+ K+ IT+   I+   + ++G     ED+      L   +I      +  E L++ 
Sbjct: 94  NSSLQFKKEITELKSIVQQLKSNNGFEHYPEDIRHLLLYLKEQEIDENYILEAAEHLVSL 153

Query: 74  RYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           R +KD ++   +   VS+ +   L  LS  F    S++   + V+G  GVGKTT + K++
Sbjct: 154 RESKDSLTASELKSTVSDFMKNKLETLS--FGGT-SYKKKYVNVIGPTGVGKTTTLAKMA 210

Query: 133 -KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-- 189
            + + +   K+     DT+R AAI+QLK +A   +                 E F++A  
Sbjct: 211 YEAVLERRKKIAFITTDTYRIAAIEQLKTYAQLLNVPL--------EVVYKLEDFQKAIE 262

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  D++ IDTAGR       +  + KMI      D         VL  T  +  L Q+
Sbjct: 263 KFKDYDMVFIDTAGRNFREEKYVKDLEKMI------DFKNDMETFLVLSMTAKERDLNQI 316

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
               +       I +K+D T+  G +  I+   +    ++  G+ +
Sbjct: 317 IHNFSTVPIEKFIFSKVDETSSYGTMYNILRNEEKGAAYITAGQSV 362


>gi|309388839|gb|ADO76719.1| flagellar biosynthetic protein FlhF [Halanaerobium praevalens DSM
           2228]
          Length = 466

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 23/206 (11%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158
           +K    D S R  ++  +G  GVGKTT + K++   + D    V L   DT+R AA++QL
Sbjct: 261 NKEIEIDNSQR--IVSFIGPTGVGKTTTMAKIAAAFALDKDKNVGLITADTYRIAAVEQL 318

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K +++     F      S   +L    F        D+++IDT G             + 
Sbjct: 319 KTYSEIIDIPFAVCYSSSKLPSLIANQFNH-----CDLILIDTPG----------SSWRD 363

Query: 219 IRVLKRLDPHAPHSVLQ----VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              LKRL+ +  H  +     +L   T    LR +    +       ++TK+D T+  G 
Sbjct: 364 KEQLKRLNGYVNHDFIDEVHLLLSLNTKSRDLRNIISKFSTLNPDKALLTKIDETSSYGD 423

Query: 275 LIPIVVTHKIPVYFLGVGEGI-NDLE 299
           ++ I   + +P+ +L  G+ +  DLE
Sbjct: 424 ILNIKENYNLPLSYLTCGQDVPEDLE 449


>gi|308068673|ref|YP_003870278.1| flagellar GTP-binding protein [Paenibacillus polymyxa E681]
 gi|305857952|gb|ADM69740.1| Flagellar GTP-binding protein [Paenibacillus polymyxa E681]
          Length = 480

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 15/185 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           ++ V G  GVGKTT I KL+ +++     KV     DT+R +A++QL+ +A   +     
Sbjct: 279 IVYVAGPTGVGKTTTIAKLAAEQLFKHHRKVGFITSDTYRISAVEQLRTYATILNVPLEV 338

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            +   D     + A ++ +    D++++DTAGR + N +L++ +  +      L P    
Sbjct: 339 VQSPGDV----HRAIQRLE--HCDLILMDTAGRNYRNELLVSELQSL------LSPINES 386

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
               VL  T+    +  +    +  G   ++ TKMD T   GG+  ++  H+ P+    +
Sbjct: 387 ETYLVLSLTSKSKDMLNITGHFSKFGLGKVVFTKMDETGSCGGMFNLL--HQFPMQLAYI 444

Query: 292 GEGIN 296
             G N
Sbjct: 445 TNGQN 449


>gi|254226077|ref|ZP_04919675.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae V51]
 gi|125621389|gb|EAZ49725.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae V51]
          Length = 482

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 264 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 323

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 324 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 377

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 378 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 424

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 425 VSVVVQNALPVAYIANGQRVPE 446


>gi|229522027|ref|ZP_04411444.1| flagellar biosynthesis protein FlhF [Vibrio cholerae TM 11079-80]
 gi|229340952|gb|EEO05957.1| flagellar biosynthesis protein FlhF [Vibrio cholerae TM 11079-80]
          Length = 495

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 336

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 391 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 437

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 438 VSVVVQNALPVAYIANGQRVPE 459


>gi|153826085|ref|ZP_01978752.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           MZO-2]
 gi|149740202|gb|EDM54355.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           MZO-2]
          Length = 495

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 336

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 391 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 437

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 438 VSVVVQNALPVAYIANGQRVPE 459


>gi|323499561|ref|ZP_08104531.1| flagellar biosynthesis regulator FlhF [Vibrio sinaloensis DSM
           21326]
 gi|323315434|gb|EGA68475.1| flagellar biosynthesis regulator FlhF [Vibrio sinaloensis DSM
           21326]
          Length = 492

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 34/212 (16%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAA 154
           +P+SK    D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A
Sbjct: 268 IPISK---QDILKRGGVVALLGPTGVGKTTTVAKLAARAAMEWGADNVALVTTDTYRIGA 324

Query: 155 IDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHN 207
            +QL I+         C+ ++  D+  LA   +   Q +   ++++DTAG      RL  
Sbjct: 325 HEQLAIYGRIMG----CAVKVAKDSKELADVIY---QLRNRRLILVDTAGMGQRDVRLSE 377

Query: 208 N-SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTK 265
               LM   G+MI           HS L VL AT  +  L++ ++ F  +   +G IMTK
Sbjct: 378 QLDTLMHESGEMI-----------HSYL-VLPATAQRKVLQETIDHFKRIP-LSGCIMTK 424

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           +D +   G  + +VV + +PV ++  G+ + +
Sbjct: 425 LDESLSLGEFVSVVVQNALPVAYIANGQRVPE 456


>gi|229528914|ref|ZP_04418304.1| flagellar biosynthesis protein FlhF [Vibrio cholerae 12129(1)]
 gi|229332688|gb|EEN98174.1| flagellar biosynthesis protein FlhF [Vibrio cholerae 12129(1)]
 gi|327484602|gb|AEA79009.1| Flagellar biosynthesis protein FlhF [Vibrio cholerae LMA3894-4]
          Length = 495

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 336

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 391 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 437

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 438 VSVVVQNALPVAYIANGQRVPE 459


>gi|15642068|ref|NP_231700.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586913|ref|ZP_01676693.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           2740-80]
 gi|121727367|ref|ZP_01680506.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae V52]
 gi|147673602|ref|YP_001217595.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae O395]
 gi|153818371|ref|ZP_01971038.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae NCTC
           8457]
 gi|153821677|ref|ZP_01974344.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae B33]
 gi|227082195|ref|YP_002810746.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae
           M66-2]
 gi|229507842|ref|ZP_04397347.1| flagellar biosynthesis protein FlhF [Vibrio cholerae BX 330286]
 gi|229511922|ref|ZP_04401401.1| flagellar biosynthesis protein FlhF [Vibrio cholerae B33]
 gi|229519058|ref|ZP_04408501.1| flagellar biosynthesis protein FlhF [Vibrio cholerae RC9]
 gi|229607387|ref|YP_002878035.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae MJ-1236]
 gi|254849155|ref|ZP_05238505.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae MO10]
 gi|255745187|ref|ZP_05419136.1| flagellar biosynthesis protein FlhF [Vibrio cholera CIRS 101]
 gi|262155954|ref|ZP_06029075.1| flagellar biosynthesis protein FlhF [Vibrio cholerae INDRE 91/1]
 gi|262167688|ref|ZP_06035391.1| flagellar biosynthesis protein FlhF [Vibrio cholerae RC27]
 gi|298497904|ref|ZP_07007711.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656614|gb|AAF95214.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121548849|gb|EAX58892.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           2740-80]
 gi|121630259|gb|EAX62657.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae V52]
 gi|126511061|gb|EAZ73655.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae NCTC
           8457]
 gi|126520775|gb|EAZ77998.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae B33]
 gi|146315485|gb|ABQ20024.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae O395]
 gi|227010083|gb|ACP06295.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae
           M66-2]
 gi|227013965|gb|ACP10175.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae O395]
 gi|229343747|gb|EEO08722.1| flagellar biosynthesis protein FlhF [Vibrio cholerae RC9]
 gi|229351887|gb|EEO16828.1| flagellar biosynthesis protein FlhF [Vibrio cholerae B33]
 gi|229355347|gb|EEO20268.1| flagellar biosynthesis protein FlhF [Vibrio cholerae BX 330286]
 gi|229370042|gb|ACQ60465.1| flagellar biosynthesis protein FlhF [Vibrio cholerae MJ-1236]
 gi|254844860|gb|EET23274.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae MO10]
 gi|255737017|gb|EET92413.1| flagellar biosynthesis protein FlhF [Vibrio cholera CIRS 101]
 gi|262023893|gb|EEY42591.1| flagellar biosynthesis protein FlhF [Vibrio cholerae RC27]
 gi|262030265|gb|EEY48908.1| flagellar biosynthesis protein FlhF [Vibrio cholerae INDRE 91/1]
 gi|297542237|gb|EFH78287.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 495

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 336

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 391 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 437

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 438 VSVVVQNALPVAYIANGQRVPE 459


>gi|167538766|ref|XP_001751042.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770451|gb|EDQ84147.1| predicted protein [Monosiga brevicollis MX1]
          Length = 111

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%)

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DA+ G+    Q + F        +I+TK+DG A+GGG +  +   + PV F+G GE I 
Sbjct: 1   MDASIGKACFDQAKAFKDTVDVGAVIVTKLDGHAKGGGALSAIAATRSPVIFIGTGERIE 60

Query: 297 DLEPFVAKDFSAVITGCLD 315
           DLEPF  + F + + G  D
Sbjct: 61  DLEPFAPRSFVSKLLGLGD 79


>gi|229513724|ref|ZP_04403186.1| flagellar biosynthesis protein FlhF [Vibrio cholerae TMA 21]
 gi|229348905|gb|EEO13862.1| flagellar biosynthesis protein FlhF [Vibrio cholerae TMA 21]
          Length = 495

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 336

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 391 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 437

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 438 VSVVVQNALPVAYIANGQRVPE 459


>gi|153828897|ref|ZP_01981564.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae
           623-39]
 gi|148875603|gb|EDL73738.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae
           623-39]
          Length = 455

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 237 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 296

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 297 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 350

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 351 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 397

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 398 VSVVVQNALPVAYIANGQRVPE 419


>gi|323493325|ref|ZP_08098448.1| flagellar biosynthesis regulator FlhF [Vibrio brasiliensis LMG
           20546]
 gi|323312411|gb|EGA65552.1| flagellar biosynthesis regulator FlhF [Vibrio brasiliensis LMG
           20546]
          Length = 492

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 32/211 (15%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAA 154
           +P+SK    D   R  V+ ++G  GVGKTT + KL+ +  M      V L + DT+R  A
Sbjct: 268 IPISK---QDILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVSTDTYRIGA 324

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN 208
            +QL I+          ++   + A + Y      Q +   ++++DTAG      RL   
Sbjct: 325 HEQLAIYGRIMGCPVKVAKDSKELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQ 378

Query: 209 -SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKM 266
              LM   G+MI           HS L VL AT  +  L++ ++ F  +   +G IMTK+
Sbjct: 379 LDTLMHESGEMI-----------HSYL-VLPATAQRKVLQETIDHFKRIP-LSGCIMTKL 425

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D +   G  + + V + +PV ++  G+ + +
Sbjct: 426 DESLSLGEFVSVTVQNSLPVAYIANGQRVPE 456


>gi|261209998|ref|ZP_05924297.1| flagellar biosynthesis protein FlhF [Vibrio sp. RC341]
 gi|260840944|gb|EEX67481.1| flagellar biosynthesis protein FlhF [Vibrio sp. RC341]
          Length = 490

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 272 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 331

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 332 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 385

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 386 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 432

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 433 VSVVVQNALPVAYIANGQRVPE 454


>gi|229524076|ref|ZP_04413481.1| flagellar biosynthesis protein FlhF [Vibrio cholerae bv. albensis
           VL426]
 gi|229337657|gb|EEO02674.1| flagellar biosynthesis protein FlhF [Vibrio cholerae bv. albensis
           VL426]
          Length = 495

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 336

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLPEQLDTLMQESG 390

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 391 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 437

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 438 VSVVVQNALPVAYIANGQRVPE 459


>gi|85859185|ref|YP_461387.1| flagellar biosynthesis protein [Syntrophus aciditrophicus SB]
 gi|85722276|gb|ABC77219.1| flagellar biosynthesis protein [Syntrophus aciditrophicus SB]
          Length = 390

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 18/221 (8%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAA 154
           L+  S PF         V + +G  GVGKTT + KLS   + +  K V L   DT+R AA
Sbjct: 180 LIGQSLPFVNHSEKEKRVKVFIGPTGVGKTTTLAKLSAYHALSKKKTVGLITTDTYRIAA 239

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSILM 212
           ++QLK +A         +    D        FKQ+  K    DV+++DT GR  N+ + +
Sbjct: 240 VEQLKTYARIIGIPLRVAPRKDD--------FKQSLKKFADKDVILVDTPGRSSNDIVNL 291

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + + +R         P     ++  T+ + ++ +V + + +     +I+TK D + R 
Sbjct: 292 KKLNETLR------SDIPFESNLLISLTSSRESMMEVALRYRIFDYDRIILTKADESLRV 345

Query: 273 GGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           G L  ++     PV ++  G+ + +D+E    +  + +I G
Sbjct: 346 GFLWDVLDRISKPVSYITNGQNVPHDIEEATPQKIARMIIG 386


>gi|153213697|ref|ZP_01948949.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           1587]
 gi|254286812|ref|ZP_04961765.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           AM-19226]
 gi|262189765|ref|ZP_06048117.1| flagellar biosynthesis protein FlhF [Vibrio cholerae CT 5369-93]
 gi|297579574|ref|ZP_06941502.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|124115758|gb|EAY34578.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           1587]
 gi|150423103|gb|EDN15051.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           AM-19226]
 gi|262034352|gb|EEY52740.1| flagellar biosynthesis protein FlhF [Vibrio cholerae CT 5369-93]
 gi|297537168|gb|EFH76001.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 495

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 336

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 391 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 437

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 438 VSVVVQNALPVAYIANGQRVPE 459


>gi|158429530|pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429531|pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429532|pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429533|pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429534|pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429535|pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429536|pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429537|pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429538|pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
          Length = 296

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 113/258 (43%), Gaps = 33/258 (12%)

Query: 50  EDLLIRSDIGVAVAQKIVEELLTKRYAKD---VSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E LL  + I  +     +++LL  R++ +   ++ + V+  + E++  ML    K   W 
Sbjct: 46  EKLLQETGIKESTKTNTLKKLL--RFSVEAGGLTEENVVGKLQEILCDMLPSADK---WQ 100

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
                  I++ G  G GKTT + KL+   M +   K+     DT+R AA++QLK +A+  
Sbjct: 101 EPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELL 160

Query: 166 SADF-VCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            A   VC            E F+QA+    + D + +DTAGR   +        + I  L
Sbjct: 161 QAPLEVC---------YTKEEFQQAKELFSEYDHVFVDTAGRNFKDP-------QYIDEL 204

Query: 223 KRLDPHAPHSVLQ---VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           K   P    S +Q   VL AT     ++ +    +       I TK+D T   G +  I+
Sbjct: 205 KETIPF--ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNIL 262

Query: 280 VTHKIPVYFLGVGEGIND 297
              KI V F+  G+ + +
Sbjct: 263 AESKIGVGFMTNGQNVPE 280


>gi|189426334|ref|YP_001953511.1| GTP-binding signal recognition particle SRP54 G- domain [Geobacter
           lovleyi SZ]
 gi|189422593|gb|ACD96991.1| GTP-binding signal recognition particle SRP54 G- domain [Geobacter
           lovleyi SZ]
          Length = 441

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 94/202 (46%), Gaps = 14/202 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I +VG  GVGKTT   KL+   + + G KV L   D FR  A++QLK +   T    
Sbjct: 246 PRIIALVGPTGVGKTTTTAKLAAMYALNRGNKVALITMDIFRVGAVEQLKTY---TKIMG 302

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +  E+ S    L     + A     D+++IDTAGR H +S  +  +   +    + D   
Sbjct: 303 IPLEVASTPKELERAVERHADC---DLILIDTAGRSHKDSDKLEEMKGFLETTIQSD--- 356

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              +   L ATT    L ++    ++   + ++ TK+D     G ++ +++   + + + 
Sbjct: 357 ---IYLCLSATTKDRELEEILNRFSIFPISKVVFTKLDECESVGCIVNLLLKANLQIAYF 413

Query: 290 GVGEGI-NDLEPFVAKDFSAVI 310
             G+ +  D+E   ++  + +I
Sbjct: 414 TTGQRVPEDIEVATSEKLAELI 435


>gi|254506956|ref|ZP_05119095.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus 16]
 gi|219550241|gb|EED27227.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus 16]
          Length = 493

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 34/212 (16%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAA 154
           +P+SK    D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A
Sbjct: 269 IPISK---QDILKRGGVVALLGPTGVGKTTTVAKLAARAAMEWGADNVALVTTDTYRIGA 325

Query: 155 IDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHN 207
            +QL I+         C+ ++  D+  LA   +   Q +   ++++DTAG      RL  
Sbjct: 326 HEQLAIYG----RIMGCAVKVAKDSKELADVIY---QLRNRRLILVDTAGMGQRDVRLSE 378

Query: 208 N-SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTK 265
               LM   G+MI           HS L VL AT  +  L++ ++ F  +   +G IMTK
Sbjct: 379 QLDTLMHESGEMI-----------HSYL-VLPATAQRKVLQETIDHFKRIP-LSGCIMTK 425

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           +D +   G  + +VV + +PV ++  G+ + +
Sbjct: 426 LDESLSLGEFVSVVVQNALPVAYIANGQRVPE 457


>gi|16078703|ref|NP_389522.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309518|ref|ZP_03591365.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313842|ref|ZP_03595647.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318765|ref|ZP_03600059.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323037|ref|ZP_03604331.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315407|ref|YP_004207694.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis BSn5]
 gi|544314|sp|Q01960|FLHF_BACSU RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|39919|emb|CAA47062.1| flhF [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634012|emb|CAB13513.1| GTPase involved in the export of flagella [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|320021681|gb|ADV96667.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis BSn5]
          Length = 366

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 113/258 (43%), Gaps = 33/258 (12%)

Query: 50  EDLLIRSDIGVAVAQKIVEELLTKRYAKD---VSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E LL  + I  +     +++LL  R++ +   ++ + V+  + E++  ML    K   W 
Sbjct: 116 EKLLQETGIKESTKTNTLKKLL--RFSVEAGGLTEENVVGKLQEILCDMLPSADK---WQ 170

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
                  I++ G  G GKTT + KL+   M +   K+     DT+R AA++QLK +A+  
Sbjct: 171 EPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELL 230

Query: 166 SADF-VCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            A   VC            E F+QA+    + D + +DTAGR   +        + I  L
Sbjct: 231 QAPLEVC---------YTKEEFQQAKELFSEYDHVFVDTAGRNFKDP-------QYIDEL 274

Query: 223 KRLDPHAPHSVLQ---VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           K   P    S +Q   VL AT     ++ +    +       I TK+D T   G +  I+
Sbjct: 275 KETIPF--ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNIL 332

Query: 280 VTHKIPVYFLGVGEGIND 297
              KI V F+  G+ + +
Sbjct: 333 AESKIGVGFMTNGQNVPE 350


>gi|299822257|ref|ZP_07054143.1| flagellar biosynthesis regulator FlhF [Listeria grayi DSM 20601]
 gi|299815786|gb|EFI83024.1| flagellar biosynthesis regulator FlhF [Listeria grayi DSM 20601]
          Length = 408

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 11/197 (5%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           P+      +  +I ++G  GVGKTT + KL  ++ + G  V     DTFRS A++Q + +
Sbjct: 197 PYRPVILKQQRIISLIGQTGVGKTTTLVKLGWQLLEQGETVGFITTDTFRSGAVEQFQGY 256

Query: 162 ADRTSADFVCSEIGSD-AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           AD+  A+ + ++   +   A+ Y  F       VD ++IDT GR + ++  +A +    +
Sbjct: 257 ADKLEAELIVAKSPEELKEAIDYLTF----VSGVDHILIDTVGRNYFDAETIAELDAYYQ 312

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           +++      P     V +A +    ++ +          G I+TK+D TA  G       
Sbjct: 313 IIQ------PDLTCFVFNANSSTADIQLILGKLENIPIDGFIVTKLDETALLGNYYRFTQ 366

Query: 281 THKIPVYFLGVGEGIND 297
               P+ ++  G+ I++
Sbjct: 367 ELTQPILWVTDGQTISE 383


>gi|262166182|ref|ZP_06033919.1| flagellar biosynthesis protein FlhF [Vibrio mimicus VM223]
 gi|262025898|gb|EEY44566.1| flagellar biosynthesis protein FlhF [Vibrio mimicus VM223]
          Length = 493

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 275 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 334

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 335 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 388

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 389 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 435

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 436 VSVVVQNALPVAYIANGQRVPE 457


>gi|320155679|ref|YP_004188058.1| flagellar biosynthesis protein FlhF [Vibrio vulnificus MO6-24/O]
 gi|319930991|gb|ADV85855.1| flagellar biosynthesis protein FlhF [Vibrio vulnificus MO6-24/O]
          Length = 497

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT I KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 279 DILKRGGVVALLGPTGVGKTTTIAKLAARAAMEYGANNVALVTTDTYRIGAHEQLSIYGR 338

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  S+ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 339 IMGCPVKVAKDSSELADVIY------QLRNRKLILVDTAGMGQRDVRLSEQLDTLMQESG 392

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ ++ F  +   +G I+TK+D +   G  
Sbjct: 393 EVI-----------HSYL-VLPATAQRRVLQETIDHFRRIP-LSGCILTKLDESLSLGEF 439

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           + +V+ + +PV ++  G+ +
Sbjct: 440 VSVVIQNALPVAYIANGQRV 459


>gi|262404420|ref|ZP_06080975.1| flagellar biosynthesis protein FlhF [Vibrio sp. RC586]
 gi|262349452|gb|EEY98590.1| flagellar biosynthesis protein FlhF [Vibrio sp. RC586]
          Length = 496

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 278 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 337

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 338 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 391

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 392 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 438

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 439 VSVVVQNALPVAYIANGQRVPE 460


>gi|154316352|ref|XP_001557497.1| hypothetical protein BC1G_04107 [Botryotinia fuckeliana B05.10]
 gi|150845907|gb|EDN21100.1| hypothetical protein BC1G_04107 [Botryotinia fuckeliana B05.10]
          Length = 325

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 44/86 (51%)

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   + V+DA+ GQ A  Q + F   A    +I+TK DG A GGG I  V     P+ F+
Sbjct: 10  PDQTVMVMDASIGQQAEAQSKAFKETADFGAIIITKTDGHASGGGAISAVAATHTPIIFI 69

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE + DLE F    F + + G  D
Sbjct: 70  GTGEHMLDLEKFAPTQFVSKLLGMGD 95


>gi|37680650|ref|NP_935259.1| flagellar biosynthesis regulator FlhF [Vibrio vulnificus YJ016]
 gi|161501816|ref|NP_760823.2| flagellar biosynthesis regulator FlhF [Vibrio vulnificus CMCP6]
 gi|37199398|dbj|BAC95230.1| flagellar biosynthesis protein FlhF [Vibrio vulnificus YJ016]
 gi|319999286|gb|AAO10350.2| Flagellar biosynthesis protein flhF [Vibrio vulnificus CMCP6]
          Length = 497

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT I KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 279 DILKRGGVVALLGPTGVGKTTTIAKLAARAAMEYGANNVALVTTDTYRIGAHEQLSIYGR 338

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  S+ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 339 IMGCPVKVAKDSSELADVIY------QLRNRKLILVDTAGMGQRDVRLSEQLDTLMQESG 392

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ ++ F  +   +G I+TK+D +   G  
Sbjct: 393 EVI-----------HSYL-VLPATAQRRVLQETIDHFRRIP-LSGCILTKLDESLSLGEF 439

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           + +V+ + +PV ++  G+ +
Sbjct: 440 VSVVIQNALPVAYIANGQRV 459


>gi|302343747|ref|YP_003808276.1| flagellar biosynthetic protein FlhF [Desulfarculus baarsii DSM
           2075]
 gi|301640360|gb|ADK85682.1| flagellar biosynthetic protein FlhF [Desulfarculus baarsii DSM
           2075]
          Length = 366

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 13/183 (7%)

Query: 116 VVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +VG  GVGKTT + KL+   +  AGL+V L   DTFR AA +QLK++      D     +
Sbjct: 169 LVGPTGVGKTTTVAKLAASFAMKAGLRVGLVTLDTFRIAAAEQLKVYG--RIMDLPTVVV 226

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G    A  Y+   + +   +D++++DT GR   ++  +A +  ++    + + H     L
Sbjct: 227 GG---AKEYQRAVE-ELSGLDLILVDTVGRAPGDADNLAELRSILSAHPQTERH-----L 277

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            +   T   +  R +E F A+     L+ TK+D T+  G ++  V   K+PV +L  G+ 
Sbjct: 278 VLACPTRDADQKRIIEGF-ALFEPKSLVFTKLDETSVYGPILNQVARAKLPVSYLTTGQR 336

Query: 295 IND 297
           + D
Sbjct: 337 VPD 339


>gi|261252373|ref|ZP_05944946.1| flagellar biosynthesis protein FlhF [Vibrio orientalis CIP 102891]
 gi|260935764|gb|EEX91753.1| flagellar biosynthesis protein FlhF [Vibrio orientalis CIP 102891]
          Length = 490

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT I KL+ +  M      V L + DT+R  A +QL I+  
Sbjct: 272 DILKRGGVVALLGPTGVGKTTTIAKLAARAAMEYGSDNVALVSTDTYRIGAHEQLAIYGR 331

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 332 IMGCPVKVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQETG 385

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ ++ F  +   +G IMTK+D +   G  
Sbjct: 386 EVI-----------HSYL-VLPATAQRKVLQETIDHFKRIP-LSGCIMTKLDESLSLGEF 432

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 433 LSVVVQNALPVTYIANGQRVPE 454


>gi|258621165|ref|ZP_05716199.1| Flagellar biosynthesis protein flhF [Vibrio mimicus VM573]
 gi|258586553|gb|EEW11268.1| Flagellar biosynthesis protein flhF [Vibrio mimicus VM573]
          Length = 483

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 265 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 324

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 325 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 378

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 379 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 425

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 426 VSVVVQNALPVAYIANGQRVPE 447


>gi|291484194|dbj|BAI85269.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           natto BEST195]
          Length = 366

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 25/200 (12%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           W        I++ G  G GKTT + KL+   M +   K+     DT+R AA++QLK +A+
Sbjct: 169 WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAE 228

Query: 164 RTSADF-VCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
              A   VC            E F+QA+    + D + +DTAGR   +        + I 
Sbjct: 229 LLQAPLEVC---------YTKEEFQQAKELFSEYDHVFVDTAGRNFKDP-------QYID 272

Query: 221 VLKRLDPHAPHSVLQ---VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            LK   P    S +Q   VL AT     ++ +    +       I TK+D T   G +  
Sbjct: 273 ELKETIPF--ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFN 330

Query: 278 IVVTHKIPVYFLGVGEGIND 297
           I+   KI V F+  G+ + +
Sbjct: 331 ILAESKIGVGFMTNGQNVPE 350


>gi|262170941|ref|ZP_06038619.1| flagellar biosynthesis protein FlhF [Vibrio mimicus MB-451]
 gi|261892017|gb|EEY38003.1| flagellar biosynthesis protein FlhF [Vibrio mimicus MB-451]
          Length = 493

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 275 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 334

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 335 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 388

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 389 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 435

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 436 VSVVVQNALPVAYIANGQRVPE 457


>gi|310641564|ref|YP_003946322.1| gtp-binding signal recognition srp54 g [Paenibacillus polymyxa SC2]
 gi|309246514|gb|ADO56081.1| GTP-binding signal recognition SRP54 G [Paenibacillus polymyxa SC2]
          Length = 481

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 17/186 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-V 170
           ++ V G  GVGKTT I KL+ +++     KV     DT+R +A++QL+ +A   +    V
Sbjct: 280 IVYVAGPTGVGKTTTIAKLAAEQLFKHHRKVGFITSDTYRISAVEQLRTYATILNVPLEV 339

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G    A+        + +  D++++DTAGR + N +L++ +  +      L P   
Sbjct: 340 VQSPGDVQRAIQ-------RLEHCDLILMDTAGRNYRNELLVSELQSL------LSPINE 386

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                VL  T+    +  +    +  G   ++ TKMD T   GG+  ++  H+ P+    
Sbjct: 387 SETYLVLSLTSKSRDMLNITGHFSKFGLGKVVFTKMDETGSCGGMFNLL--HQFPMQLAY 444

Query: 291 VGEGIN 296
           +  G N
Sbjct: 445 ITNGQN 450


>gi|51246528|ref|YP_066412.1| flagellar biosynthesis protein (FlhF) [Desulfotalea psychrophila
           LSv54]
 gi|50877565|emb|CAG37405.1| related to flagellar biosynthesis protein (FlhF) [Desulfotalea
           psychrophila LSv54]
          Length = 430

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 29/220 (13%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAID 156
           PL K  N         I +VG  GVGKTT + KL+  K+S     + +   DT+R AA++
Sbjct: 229 PLLKEINEQ-----QCIALVGPTGVGKTTTLAKLAAAKLSSGSASIAMITIDTYRIAAVE 283

Query: 157 QLKIWAD--RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           QLK++ +      D V +    +++ L +        +  ++++IDTAGR   +   +  
Sbjct: 284 QLKVYGEIMNIPVDVVITPEQLESSLLRH--------RDCELILIDTAGRSPKDDFSIDE 335

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           +   +R    ++ H       VL  T+ ++ L +        G    + TK+D  ++ G 
Sbjct: 336 LANFLRPEFNIEKHL------VLSTTSRESELAETIRQFGRLGIDSTVYTKIDECSQLGV 389

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           ++   + +K P+ ++  G+        V +DF  +   C+
Sbjct: 390 ILNTQLHNKTPISYMTNGQR-------VPEDFIDISPKCI 422


>gi|224370769|ref|YP_002604933.1| FlhF [Desulfobacterium autotrophicum HRM2]
 gi|223693486|gb|ACN16769.1| FlhF [Desulfobacterium autotrophicum HRM2]
          Length = 368

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 91/200 (45%), Gaps = 17/200 (8%)

Query: 102 PFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQL 158
           PF  D      PH    VG  GVGKTT I KL+ ++   G K V L + D++R  A +QL
Sbjct: 162 PFAEDQGVPGMPHAAAFVGPTGVGKTTTIAKLAARLKFQGKKNVGLISIDSYRMGAFEQL 221

Query: 159 KIWADRTSADFVC-SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           K +   T    +C      D    A E   Q     +DV++IDTAG   +++       +
Sbjct: 222 KSYG--TIMGVMCVPAYNRDDLVKALERMGQ-----MDVVLIDTAGHSPSDTP------R 268

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           M  V   LD     SV  VL  TTG   +R+     +       + TK+D T + G ++ 
Sbjct: 269 MEEVAHVLDGGFKVSVHLVLSVTTGFFNMRESAKAFSALNPESYVFTKIDETRQCGKIMD 328

Query: 278 IVVTHKIPVYFLGVGEGIND 297
            V   ++P+ F+  G+ + +
Sbjct: 329 QVGDLRLPISFVTNGQRVPE 348


>gi|258626711|ref|ZP_05721535.1| Flagellar biosynthesis protein flhF [Vibrio mimicus VM603]
 gi|258581007|gb|EEW05932.1| Flagellar biosynthesis protein flhF [Vibrio mimicus VM603]
          Length = 483

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 265 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 324

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 325 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 378

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           + I           HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  
Sbjct: 379 ETI-----------HSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEF 425

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           + +VV + +PV ++  G+ + +
Sbjct: 426 VSVVVQNALPVAYIANGQRVPE 447


>gi|299534766|ref|ZP_07048096.1| flagellar biosynthesis regulator FlhF [Lysinibacillus fusiformis
           ZC1]
 gi|298729854|gb|EFI70399.1| flagellar biosynthesis regulator FlhF [Lysinibacillus fusiformis
           ZC1]
          Length = 398

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 28/221 (12%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            S+    I ++G  GVGKTT I K++ + + +   K+     DT+R AAI+QLK +A   
Sbjct: 199 LSYERKYINILGPTGVGKTTTIAKMAARAVLEKKKKIGFITTDTYRIAAIEQLKTYAGLL 258

Query: 166 SADFVCSEIGSDAAALAYEA--FKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            A             +AY A  F+QA  +   +D++ IDTAGR +     +  + ++I  
Sbjct: 259 QA----------PVEIAYNATDFEQAIQRLSHLDLVFIDTAGRNYKEVKYVDDLQRLI-- 306

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
             + D HA   +  VL  TT +  +   V+ F  +      I TK+D T   G +I +++
Sbjct: 307 --KFDDHAESYL--VLAMTTKERDMENIVDQFKQLP-IQKFIFTKIDETNSIGTMINLMI 361

Query: 281 TH-KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320
            + K   Y+    E   D+E     D  AV+      GEEK
Sbjct: 362 KYNKGLAYYTNGQEVPEDIE---EADLEAVLNLFFQ-GEEK 398


>gi|83589643|ref|YP_429652.1| flagellar biosynthesis regulator FlhF [Moorella thermoacetica ATCC
           39073]
 gi|83572557|gb|ABC19109.1| GTP-binding signal recognition particle SRP54, G-domain [Moorella
           thermoacetica ATCC 39073]
          Length = 392

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 17/184 (9%)

Query: 117 VGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VG  GVGKTT + K++ + S     KV L   DT+R  A+DQL+ +A+            
Sbjct: 195 VGPTGVGKTTTLAKVAARHSLYLEQKVGLITLDTYRIGAVDQLRTYAEIMGLPLEV---- 250

Query: 176 SDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
               A+    F++A  + +  D++++DTAGR   N  ++A   +    L+ +   A + V
Sbjct: 251 ----AMTPREFREALGRLEDRDIILVDTAGRAPENKAMLA---ETRGFLEAMPEGAVYLV 303

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L    AT  Q+ L+ VE F  +     LI TK+D T+  G ++ +     +P+ ++  G+
Sbjct: 304 LS--SATRRQDLLQAVERFRPL-NYNRLIFTKLDETSCPGVMVTVAAAAGVPLAYVTAGQ 360

Query: 294 GIND 297
            + D
Sbjct: 361 DVPD 364


>gi|15639700|ref|NP_219150.1| flagellar-associated GTP-binding protein (flhF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025938|ref|YP_001933710.1| flagellar-associated GTP-binding protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|3913684|sp|Q56339|FLHF_TREPA RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|1216384|gb|AAB00551.1| flhF [Treponema pallidum]
 gi|3323015|gb|AAC65679.1| flagellar-associated GTP-binding protein (flhF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018513|gb|ACD71131.1| flagellar-associated GTP-binding protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060078|gb|ADD72813.1| flagellar biosynthetic protein FlhF [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 437

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 16/189 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLS-------KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           I++VG  GVGKTT + KL+        K +    +V +   D FR  A  Q++ + +   
Sbjct: 220 IVLVGPTGVGKTTTLAKLAAFYFVTEPKRTGIQPRVKIITTDNFRIGAAFQMERYCELMG 279

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D     + +    L Y    Q   ++ DV+ +DT GR   +   +  + +  R +K  +
Sbjct: 280 LDLCV--VQAPVEFLTYMTLYQ---QETDVVFVDTEGRSPVDGQNIERMVEYFRAVKNFE 334

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                 V   +DA +  N LR+V   +A+     LI+TK+D T   G LI  +   + P+
Sbjct: 335 ----LEVYLTIDAGSKANDLREVFKQYALFEYRALIVTKLDETTSIGNLISALSEARTPI 390

Query: 287 YFLGVGEGI 295
            ++  G+ +
Sbjct: 391 TYITTGQTV 399


>gi|296330855|ref|ZP_06873330.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674373|ref|YP_003866045.1| the export of flagella GTPase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296151860|gb|EFG92734.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412617|gb|ADM37736.1| GTPase involved in the export of flagella [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 366

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 26/210 (12%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           W        I++ G  G GKTT + KL+   M +   K+     DT+R AA++QLK +A+
Sbjct: 169 WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKQKKIAFITTDTYRIAAVEQLKTYAE 228

Query: 164 RTSADF-VCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
              A   VC            E F+QA+    + D + IDTAGR            + I 
Sbjct: 229 LLQAPLEVC---------YTKEEFQQAKELFSEYDHVFIDTAGRNFKEQ-------QYID 272

Query: 221 VLKRLDPHAPHSVLQ---VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            LK   P    S +Q   VL AT     ++ +    +       I TK+D T   G +  
Sbjct: 273 ELKETIPF--ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQFIFTKIDETTSLGSVFN 330

Query: 278 IVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306
           I+   KI   F+  G+ +  D++     DF
Sbjct: 331 ILAESKIGAGFITNGQNVPEDIQTVSPLDF 360


>gi|152997432|ref|YP_001342267.1| GTP-binding signal recognition particle [Marinomonas sp. MWYL1]
 gi|150838356|gb|ABR72332.1| GTP-binding signal recognition particle SRP54 G- domain
           [Marinomonas sp. MWYL1]
          Length = 427

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 31/221 (14%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            I  +G  GVGKTT IGK++ +  +      V+L   DT+R AA +QL+ +    +   V
Sbjct: 221 CIAFMGPTGVGKTTTIGKIAAQHVLKHGSEGVVLITTDTYRIAAHEQLRTFGRILN---V 277

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVD--VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
             E+ ++     Y    +  AK  +  ++++DTAG    +S     + + + ++KR    
Sbjct: 278 PVEVVNE-----YSDLNEVLAKYANYSLVLVDTAGMNPRDS----NLERQLLMMKRA--R 326

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           A    L VL  T+ +  L+ V   ++     G +++K+D +A  G  I +V+   +PV +
Sbjct: 327 ASLKKLLVLPCTSQRQVLKTVVDVYSQVQLDGCVLSKLDESASLGEAISVVIEEGLPVVY 386

Query: 289 LGVGEGI-NDLEP-----------FVAKDFSAVITGCLDYG 317
           +  G+ I +D+EP           + A+ +S  + G L YG
Sbjct: 387 IADGQRIPDDIEPARAHNLISRAVYTAEHYSQ-LYGSLKYG 426


>gi|315648118|ref|ZP_07901219.1| flagellar biosynthetic protein FlhF [Paenibacillus vortex V453]
 gi|315276764|gb|EFU40107.1| flagellar biosynthetic protein FlhF [Paenibacillus vortex V453]
          Length = 479

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 116/257 (45%), Gaps = 28/257 (10%)

Query: 49  LEDLLIRSDIGVAVAQK---IVEELLTKRYAK--DVSVQRVLY-DVSELIHKMLMPLSKP 102
           L DLL++ D+   + ++     EE  T  + +  D  +Q V+Y   +  I   +    +P
Sbjct: 223 LRDLLLKQDLSAKLTEEWLMAAEEAWTANHMQLSDAELQDVIYKQAAAFIEGRIGGGVQP 282

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                     ++ + G  GVGKTT I K+ ++++     KV     DT+R +A++QL+ +
Sbjct: 283 -------ETRIVYIAGPTGVGKTTTIAKIAAEQLFRHQRKVGFITSDTYRISAVEQLRTY 335

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A   +      +   D       A ++ Q    D++++DTAGR + N +L++        
Sbjct: 336 ASILNVPMEVVQSPGDMQ----RALQKLQ--DCDLILMDTAGRNYRNELLVSE------- 382

Query: 222 LKRLDPHAPHS-VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           L+ L  H+  S    VL  T+  + + ++           +I TKMD T   G +  ++ 
Sbjct: 383 LQSLFSHSDQSETYLVLSLTSKSSDMIEIADHFNKYALDKVIFTKMDETGSYGSMFNLID 442

Query: 281 THKIPVYFLGVGEGIND 297
            H + + ++  G+ + D
Sbjct: 443 AHDLRLSYMTNGQNVPD 459


>gi|152992634|ref|YP_001358355.1| flagellar biosynthesis protein FlhF [Sulfurovum sp. NBC37-1]
 gi|151424495|dbj|BAF71998.1| flagellar biosynthesis protein FlhF [Sulfurovum sp. NBC37-1]
          Length = 362

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 18/197 (9%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWA 162
           D  H   ++++VG  GVGKTT I KL+ + +   D   KV L   D+++  AI+QL  +A
Sbjct: 158 DLDHS-KIMMLVGPTGVGKTTTIAKLAARYAYLLDRPYKVALINLDSYKVGAIEQLAHYA 216

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D    +   S   +DA     EA         D++++DTAG    ++       K ++ +
Sbjct: 217 DIMQIEH-YSIASADAFGEKIEALSS-----YDIILVDTAGMSPYDT------QKFVKTI 264

Query: 223 KRLDPHAPH--SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           + ++   P    V  VL AT     +  +    +      +I++K D T   G L+  ++
Sbjct: 265 EFVNTKIPKKIEVALVLAATVKYEDMEDIHENFSFLNLDSVIISKFDETKHFGTLLNFML 324

Query: 281 THKIPVYFLGVGEGIND 297
            + +P+ +   G+ + D
Sbjct: 325 LYDLPMSYFSTGQEVPD 341


>gi|261407963|ref|YP_003244204.1| flagellar biosynthetic protein FlhF [Paenibacillus sp. Y412MC10]
 gi|261284426|gb|ACX66397.1| flagellar biosynthetic protein FlhF [Paenibacillus sp. Y412MC10]
          Length = 479

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 17/189 (8%)

Query: 112 HVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169
            ++ V G  GVGKTT I K+ ++++     KV     DT+R +A++QL+ +A   +    
Sbjct: 285 RIVYVAGPTGVGKTTTIAKIAAEQLFRNQRKVGFITSDTYRISAVEQLRTYASILNVPME 344

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V    G    AL        + +  D++++DTAGR + N +L++        L+ L  H+
Sbjct: 345 VVQSPGDMQRAL-------QKLQDCDLVLMDTAGRNYRNELLVSE-------LQSLFSHS 390

Query: 230 PHS-VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             S    VL  T+  + + ++    +      +I TKMD T   G L  ++  H + + +
Sbjct: 391 DQSETYLVLSLTSKSSDMIEIADHFSKYELDKVIFTKMDETGSYGALFNLIDAHNLRLSY 450

Query: 289 LGVGEGIND 297
           +  G+ + D
Sbjct: 451 MTNGQNVPD 459


>gi|262393603|ref|YP_003285457.1| flagellar biosynthesis protein FlhF [Vibrio sp. Ex25]
 gi|262337197|gb|ACY50992.1| flagellar biosynthesis protein FlhF [Vibrio sp. Ex25]
          Length = 505

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 287 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 346

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 347 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 400

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ ++ F  +   +G IMTK+D +   G  
Sbjct: 401 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCIMTKLDESLSLGEF 447

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           I +V+ + +PV ++  G+ +
Sbjct: 448 ISVVIQNAMPVAYIANGQRV 467


>gi|91223560|ref|ZP_01258825.1| flagellar biosynthesis regulator FlhF [Vibrio alginolyticus 12G01]
 gi|91191646|gb|EAS77910.1| flagellar biosynthesis regulator FlhF [Vibrio alginolyticus 12G01]
          Length = 505

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 287 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 346

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 347 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 400

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ ++ F  +   +G IMTK+D +   G  
Sbjct: 401 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCIMTKLDESLSLGEF 447

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           I +V+ + +PV ++  G+ +
Sbjct: 448 ISVVIQNAMPVAYIANGQRV 467


>gi|329929326|ref|ZP_08283079.1| flagellar biosynthesis protein FlhF [Paenibacillus sp. HGF5]
 gi|328936695|gb|EGG33138.1| flagellar biosynthesis protein FlhF [Paenibacillus sp. HGF5]
          Length = 479

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 15/188 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            ++ V G  GVGKTT I K+ ++++     KV     DT+R +A++QL+ +A   +    
Sbjct: 285 RIVYVAGPTGVGKTTTIAKIAAEQLFRNQRKVGFITSDTYRISAVEQLRTYASILNVPME 344

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +   D       A ++ Q    D++++DTAGR + N +L++        L+ L  H+ 
Sbjct: 345 VVQSPGDMQ----RALQKLQ--DCDLVLMDTAGRNYRNELLVSE-------LQSLFSHSD 391

Query: 231 HS-VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
            S    VL  T+  + + ++    +      +I TKMD T   G L  ++  H + + ++
Sbjct: 392 QSETYLVLSLTSKSSDMIEIADHFSKYELDKVIFTKMDETGSYGALFNLIDAHNLRLSYM 451

Query: 290 GVGEGIND 297
             G+ + D
Sbjct: 452 TNGQNVPD 459


>gi|62241192|dbj|BAD93654.1| putative GTP-binding protein [Vibrio alginolyticus]
          Length = 505

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 287 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 346

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 347 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 400

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ ++ F  +   +G IMTK+D +   G  
Sbjct: 401 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCIMTKLDESLSLGEF 447

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           I +V+ + +PV ++  G+ +
Sbjct: 448 ISVVIQNAMPVAYIANGQRV 467


>gi|254228446|ref|ZP_04921872.1| SRP54-type protein, GTPase domain [Vibrio sp. Ex25]
 gi|151939034|gb|EDN57866.1| SRP54-type protein, GTPase domain [Vibrio sp. Ex25]
          Length = 495

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 336

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ ++ F  +   +G IMTK+D +   G  
Sbjct: 391 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCIMTKLDESLSLGEF 437

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           I +V+ + +PV ++  G+ +
Sbjct: 438 ISVVIQNAMPVAYIANGQRV 457


>gi|194015091|ref|ZP_03053708.1| flagellar biosynthetic protein FlhF [Bacillus pumilus ATCC 7061]
 gi|194014117|gb|EDW23682.1| flagellar biosynthetic protein FlhF [Bacillus pumilus ATCC 7061]
          Length = 371

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 21/193 (10%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           R   I++ G  G GKTT I KL+ K +     K+     DT+R AAI+QLK +A+  +A 
Sbjct: 179 RSKYIVLFGSTGAGKTTTIAKLAAKTAIQKQKKIAFITTDTYRIAAIEQLKTYAELLNAP 238

Query: 169 F-VCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             VC          + E F +AQ   K+ D + +DTAGR       +  +  +I   + +
Sbjct: 239 LEVC---------YSREDFVKAQETFKEYDHIFVDTAGRNFKEEAYIKELTDIIPFNESI 289

Query: 226 DPHAPHSVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                 S L V+ AT+  Q+    V+ F  V      I TK+D T   G +  I+   +I
Sbjct: 290 -----QSFL-VMSATSKYQDMKAMVKRFEHVP-IDQFIFTKVDETDTMGTIFQIIADSQI 342

Query: 285 PVYFLGVGEGIND 297
            + FL  G+ + +
Sbjct: 343 GLGFLTNGQNVPE 355


>gi|269965688|ref|ZP_06179801.1| Flagellar biosynthesis protein flhF [Vibrio alginolyticus 40B]
 gi|269829756|gb|EEZ83992.1| Flagellar biosynthesis protein flhF [Vibrio alginolyticus 40B]
          Length = 495

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 277 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 336

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 337 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 390

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ ++ F  +   +G IMTK+D +   G  
Sbjct: 391 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCIMTKLDESLSLGEF 437

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           I +V+ + +PV ++  G+ +
Sbjct: 438 ISVVIQNAMPVAYIANGQRV 457


>gi|154249074|ref|YP_001409899.1| flagellar biosynthesis regulator FlhF [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153010|gb|ABS60242.1| GTP-binding signal recognition particle SRP54 G- domain
           [Fervidobacterium nodosum Rt17-B1]
          Length = 372

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 122/266 (45%), Gaps = 23/266 (8%)

Query: 35  IISSRRLDDGV-REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93
           +ISS+R ++    E     L + DI   ++ K++E    K    D S +     +SE   
Sbjct: 102 MISSQRTNEPQWVESFRKALKKQDIDDEISDKLIEYSKMKYQELDFSNENTRLILSE--- 158

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRS 152
            M +P       D   R   +L  G  GVGKTT + KL+ K+  +  K V +   DT+R 
Sbjct: 159 -MFLPFINTSVPDLKGR---VLFAGPTGVGKTTTLAKLAAKLKLSEKKRVAVITLDTYRI 214

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA-KKVDVLIIDTAGRLHNNSIL 211
           AA+DQLK +A       +  ++    A    EA  + +A    DV++IDTAGR   N + 
Sbjct: 215 AAVDQLKTYA-------MLLDVPIRVAYTPKEAKLEVEALSDYDVILIDTAGRSQKNDLH 267

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M+ I  M  ++      +P     V+        +++V    ++   T +I++KMD T+ 
Sbjct: 268 MSEIKAMSEIV------SPDFTFLVIGMQYRSEDVKEVLTKFSMISPTHVILSKMDETSA 321

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGIND 297
            G  + +    K P+ F+  G+ + D
Sbjct: 322 LGHFVNVPNFLKAPIAFITNGQRVPD 347


>gi|253573539|ref|ZP_04850882.1| GTP-binding signal recognition particle SRP54 G [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251847067|gb|EES75072.1| GTP-binding signal recognition particle SRP54 G [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 472

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 113/262 (43%), Gaps = 38/262 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           ++  L+  ++G  +A + VEE+    Y   +S  + L D       M   L    N    
Sbjct: 216 IQQQLMSQEVGPELADRWVEEV----YEAWLSSGKTLSD-----DDMQARLRTIVNSFLD 266

Query: 109 HR--------PHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           HR          ++ + G  GVGKTT I KL + ++     KV     DT+R +AI+QL+
Sbjct: 267 HRIDAGIGDQTRIVYIAGPTGVGKTTTIAKLAADQIFRLHKKVGFITADTYRISAIEQLR 326

Query: 160 IWADRTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
            +A   +    V    G    A+        + +  D++++DTAGR + N + +A +  +
Sbjct: 327 TYATILNVPLEVVQSPGDVQRAM-------QRLEHCDLILMDTAGRNYLNELFVAELHSL 379

Query: 219 IRVLKRLDPHAPHSVLQ---VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
           +         AP  V +   VL  T+    ++++    +      LI TK+D T   G +
Sbjct: 380 L---------APSDVSETYLVLSLTSKAQDMKRITEHFSKYNLDKLIFTKLDETETTGAI 430

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
             ++  +   V FL  G+ + D
Sbjct: 431 FNLLNEYPFKVSFLTNGQNVPD 452


>gi|258404722|ref|YP_003197464.1| flagellar biosynthetic protein FlhF [Desulfohalobium retbaense DSM
           5692]
 gi|257796949|gb|ACV67886.1| flagellar biosynthetic protein FlhF [Desulfohalobium retbaense DSM
           5692]
          Length = 437

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 14/203 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  I +VG  GVGKTT I KL+ + +   G  ++L   D FR AA +QL+++A+  +   
Sbjct: 237 PKRIALVGPTGVGKTTTIAKLAAQYLRRYGQGLLLVTMDNFRIAAAEQLRVYAEIMN--- 293

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V  E+ + A  +     ++ + KK  +++ID+AGR   +   M  +   +   +  D H 
Sbjct: 294 VPLEVVTSAEQM-RTVMQRHEDKK--LMLIDSAGRNPRDESGMQELHAFLGDSQLFDKHL 350

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL ATT    ++ +          GLI TK+D T   G ++ +      P+ +L
Sbjct: 351 ------VLSATTRDEDMQSIVDRFGDLEINGLIFTKIDETQSYGSIVNVQHRTGCPLTYL 404

Query: 290 GVGEGI-NDLEPFVAKDFSAVIT 311
             G+ +  DL P  +   S +IT
Sbjct: 405 TNGQRVPEDLLPADSVQLSQLIT 427


>gi|304311115|ref|YP_003810713.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1]
 gi|301796848|emb|CBL45060.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1]
          Length = 523

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 110/252 (43%), Gaps = 34/252 (13%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L R  I   + +++V +L +       S++  +  V + +HK L      F+ D   R  
Sbjct: 254 LHRMGIAAPICRRLVNQLPSS------SIREGMRVVLQRLHKEL----SIFSPDIRERGG 303

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD--RTSAD 168
           ++ ++G  GVGKTT I K++    M     +V L   D++R A  +QLK      R    
Sbjct: 304 IVALLGPAGVGKTTSISKIAAAYAMKHGVDEVALVTTDSYRIAGHEQLKTLGKILRVPMR 363

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRL 225
            V  E       L  E     Q K   +++IDTAG  H +      M  +G + R + RL
Sbjct: 364 VVTEEY---PLTLVLE-----QLKNKKLILIDTAGLSHRDQDFEEQMKILGGLPRQITRL 415

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                     VL +T+ +  L +    +   G  G I+TK+D  A  G  + +VV  ++P
Sbjct: 416 ---------LVLASTSQKRILEKAVEDYQPLGLDGCILTKLDECASLGEALSVVVEARLP 466

Query: 286 VYFLGVGEGIND 297
           V +   G+ I D
Sbjct: 467 VAYTTDGQNIPD 478


>gi|187478178|ref|YP_786202.1| flagellar biosynthesis regulator FlhF [Bordetella avium 197N]
 gi|115422764|emb|CAJ49292.1| flagellar biosynthesis protein [Bordetella avium 197N]
          Length = 818

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 130/285 (45%), Gaps = 35/285 (12%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPF 103
            RE +   L RS +    +  +V  LL +R   ++   R   +  +E++  +  P+ +  
Sbjct: 175 TREPVNASLFRSLLEAGFSMPLVRALL-ERLPPEIDAARARDWARNEVLTHL--PVLRDE 231

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIW 161
           N  F     V+ ++G  GVGKTT + KL+ +    +   +V +   D FR  A++QL+I+
Sbjct: 232 N-AFLAAGGVLALLGPTGVGKTTTLAKLAARCVAREGRDQVAMLTTDNFRIGALEQLQIY 290

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMAGI 215
                   V +    DAA L  +A  +  ++K+  ++IDT G       +   + L+ G 
Sbjct: 291 GRLMG---VPARSVRDAAEL-RDALAELGSRKI--ILIDTTGISQRDRNVAEQAALLCGG 344

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE--MFHAVA-GTTGLIMTKMDGTARG 272
           G+ +R L             VL+A +  + L +V     H V     G I+TK+D   R 
Sbjct: 345 GRQVRRLL------------VLNAASQGDTLDEVAHAYRHGVGEDVVGCIITKLDEATRL 392

Query: 273 GGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDY 316
           G  +   + H++P++++  G+ +  +L P  A+        CLD+
Sbjct: 393 GPALDTAIRHRLPIHYISNGQKVPENLVPAQAQPLVDHALACLDH 437


>gi|167633397|ref|ZP_02391722.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0442]
 gi|170686090|ref|ZP_02877312.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0465]
 gi|254683273|ref|ZP_05147134.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           CNEVA-9066]
 gi|254741035|ref|ZP_05198723.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           Kruger B]
 gi|167531435|gb|EDR94113.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0442]
 gi|170669787|gb|EDT20528.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0465]
          Length = 435

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 107/241 (44%), Gaps = 19/241 (7%)

Query: 62  VAQKIVEELLTKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVV 117
           + Q  VE+     YA+ + V  +       E+I  +L  +S  FN +  F      I ++
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALI 246

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  +
Sbjct: 247 GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDE 304

Query: 178 AA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  L
Sbjct: 305 AAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICL 355

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+ 
Sbjct: 356 TLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQD 414

Query: 295 I 295
           +
Sbjct: 415 V 415


>gi|206603137|gb|EDZ39617.1| flagellar biosynthesis protein FlhF [Leptospirillum sp. Group II
           '5-way CG']
          Length = 393

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 21/193 (10%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            VIL+ G  GVGKTT I KL+   +   G KV L   DT+R  A++QL+I+ D       
Sbjct: 196 QVILLAGPTGVGKTTTIAKLAAGFTLKHGKKVRLINLDTYRIGALEQLRIYGDLMG---- 251

Query: 171 CSEIGSDAAALAYEAFKQAQAKKV---DVLIIDTAGRLHNNSILMAGI--GKMIRVLKRL 225
              +  D A       +  +A  V   D++++DTAG     +  +     G + R     
Sbjct: 252 ---LPVDVAGTPERFLEILEAGSVSPEDLILVDTAGMSSRETAKLKPFIDGALSR----- 303

Query: 226 DPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            PH   +V  VL A+   + L   +E F  ++    LI+TK+D T   G + P +    +
Sbjct: 304 -PHLDLNVSLVLAASAKTDDLDDALERFMPLS-LRSLILTKLDETNCLGSVYPFLSRAPV 361

Query: 285 PVYFLGVGEGIND 297
           PV ++  G+ + D
Sbjct: 362 PVSYVTTGQRVPD 374


>gi|217959254|ref|YP_002337802.1| flagellar biosynthesis regulator FlhF [Bacillus cereus AH187]
 gi|229138472|ref|ZP_04267061.1| hypothetical protein bcere0013_15890 [Bacillus cereus BDRD-ST26]
 gi|217066646|gb|ACJ80896.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           AH187]
 gi|228645009|gb|EEL01252.1| hypothetical protein bcere0013_15890 [Bacillus cereus BDRD-ST26]
          Length = 436

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +S  FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIKYILEDMSSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|228945374|ref|ZP_04107729.1| hypothetical protein bthur0007_15370 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814346|gb|EEM60612.1| hypothetical protein bthur0007_15370 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 436

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +S  FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMSSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|165869383|ref|ZP_02214042.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0488]
 gi|167638723|ref|ZP_02396998.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0193]
 gi|177650348|ref|ZP_02933315.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0174]
 gi|190566480|ref|ZP_03019398.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815456|ref|YP_002815465.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. CDC 684]
 gi|254734626|ref|ZP_05192338.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           Western North America USA6153]
 gi|254755278|ref|ZP_05207312.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           Vollum]
 gi|164714823|gb|EDR20341.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0488]
 gi|167513187|gb|EDR88558.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0193]
 gi|172083492|gb|EDT68552.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0174]
 gi|190562615|gb|EDV16582.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005419|gb|ACP15162.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. CDC 684]
          Length = 435

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 107/241 (44%), Gaps = 19/241 (7%)

Query: 62  VAQKIVEELLTKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVV 117
           + Q  VE+     YA+ + V  +       E+I  +L  +S  FN +  F      I ++
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALI 246

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  +
Sbjct: 247 GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDE 304

Query: 178 AA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  L
Sbjct: 305 AAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICL 355

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+ 
Sbjct: 356 TLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQD 414

Query: 295 I 295
           +
Sbjct: 415 V 415


>gi|157165253|ref|YP_001467216.1| flagellar biosynthesis regulator FlhF [Campylobacter concisus
           13826]
 gi|112802034|gb|EAT99378.1| flagellar biosynthesis protein [Campylobacter concisus 13826]
          Length = 452

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 35/247 (14%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           A+ Q  +E L     +   +V+R  Y    L+  ML P  K        +  ++++VG  
Sbjct: 205 AIMQTTLENLPVSMKSNPTAVKRYFYS---LLRNML-PCRKELG---DKKQRIMMLVGPT 257

Query: 121 GVGKTTVIGKLSKKM---SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVGKTT + KL+ +    ++   K  +   DT+R  A++QL  +A       +       
Sbjct: 258 GVGKTTTLAKLAARFAYGNEKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPIL------- 310

Query: 178 AAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
              +  E F+ A  Q    DV++IDT G    +             L+RLD    HS  +
Sbjct: 311 -DVIEVEDFQNAIKQLSYCDVILIDTTGNSQYDK----------EKLERLDKFLKHSGAK 359

Query: 236 V---LDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           +   L  + G      +E+++  +      LI+TK D T   G +  ++     PV +  
Sbjct: 360 IDVNLVLSAGSKVEDLIEIYNGFSFLQIDTLIITKFDETKIFGNVFSLIYETNTPVSYFS 419

Query: 291 VGEGIND 297
           VG+ + D
Sbjct: 420 VGQEVPD 426


>gi|326796450|ref|YP_004314270.1| flagellar biosynthetic protein FlhF [Marinomonas mediterranea
           MMB-1]
 gi|326547214|gb|ADZ92434.1| flagellar biosynthetic protein FlhF [Marinomonas mediterranea
           MMB-1]
          Length = 432

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 22/220 (10%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D +H    I  +G  GVGKTT IGK++ +  + +    V+L   DT+R AA +QL+ +  
Sbjct: 219 DMAHMSGCIAFMGPTGVGKTTSIGKIAAQHVLKNGADSVVLVTTDTYRIAAHEQLRTFGR 278

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG---RLHNNSILMAGIGKMIR 220
             +   V  E+ ++ + L     K +      ++++DTAG   R  N    +  + K   
Sbjct: 279 ILN---VPVEVVNEYSDLNEVLDKYS---NYSLVLVDTAGMNPRDRNLERQLKMMQKARG 332

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
            LK+L          VL  T+ +  L+ V   ++     G +++K+D +A  G  I +V+
Sbjct: 333 YLKKL---------LVLPCTSQRQVLKTVVDVYSQIQLDGCVLSKIDESASLGEAISVVI 383

Query: 281 THKIPVYFLGVGEGI-NDLEPFVAKDF-SAVITGCLDYGE 318
              +PV ++  G+ I +D+EP  A +  S  +     YG+
Sbjct: 384 EEGLPVMYVADGQRIPDDIEPARAHNLISRAVYTAEQYGQ 423


>gi|254723856|ref|ZP_05185642.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           A1055]
 gi|301053309|ref|YP_003791520.1| flagellar biosynthesis protein [Bacillus anthracis CI]
 gi|300375478|gb|ADK04382.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 436

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +S  FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMSSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|148976428|ref|ZP_01813134.1| flagellar biosynthesis regulator FlhF [Vibrionales bacterium
           SWAT-3]
 gi|145964251|gb|EDK29507.1| flagellar biosynthesis regulator FlhF [Vibrionales bacterium
           SWAT-3]
          Length = 493

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 25/200 (12%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  ++ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 275 DILKRGGIVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 334

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++  S+ A + Y      Q +   ++++DTAG    +          +R+ +
Sbjct: 335 IMGCPVRVAKDSSELADVIY------QLRNRRLILVDTAGMGQRD----------VRLSE 378

Query: 224 RLDP--HAPHSVLQ---VLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +LD       SV+    VL AT  +  L++ +E F  +   +G IMTK+D +   G  I 
Sbjct: 379 QLDTLMQESGSVINSYLVLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDESLSLGEFIS 437

Query: 278 IVVTHKIPVYFLGVGEGIND 297
           +V+ + +PV ++  G+ + +
Sbjct: 438 VVIQNALPVAYIANGQRVPE 457


>gi|47565440|ref|ZP_00236481.1| flagellar biosynthetic protein flhF, putative [Bacillus cereus
           G9241]
 gi|47557430|gb|EAL15757.1| flagellar biosynthetic protein flhF, putative [Bacillus cereus
           G9241]
          Length = 433

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +S  FN +  F      I +
Sbjct: 184 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMSSHFNTENVFEKEVQTIAL 243

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 244 IGPTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 301

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 302 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 352

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 353 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 411

Query: 294 GI 295
            +
Sbjct: 412 DV 413


>gi|251772427|gb|EES52994.1| flagellar biosynthesis protein FlhF [Leptospirillum
           ferrodiazotrophum]
          Length = 396

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 26/199 (13%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGL------KVMLAAGDTFRSAAIDQLKIWAD 163
           RP V+L VG  GVGKTT + K+      AGL      +V L   DT+R  A++QL+I+ D
Sbjct: 191 RPKVVLFVGPTGVGKTTTVAKIG-----AGLVARHKKRVGLLNLDTYRIGAVEQLRIYGD 245

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                 V  E+ + A+ L+    + ++    DV+++D+AGR         G  +++  L 
Sbjct: 246 LMG---VPVEVANTASRLSGAIGRLSEN---DVILVDSAGRSDG------GGEELLPFLS 293

Query: 224 RLDPHAPHSVLQVLDATTGQNA--LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            L     + +  VL  + GQ A  L +    +       L++TK+D T   G L  ++  
Sbjct: 294 VLSSGQEYDLSVVLVVSAGQKARDLERTATAYQKIRPEALVVTKIDETGALGSLYGLLAH 353

Query: 282 HKIPVYFLGVGEGI-NDLE 299
            ++PV ++  G+ +  D+E
Sbjct: 354 GRLPVSYVTTGQKVPEDIE 372


>gi|49184610|ref|YP_027862.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           Sterne]
 gi|65319053|ref|ZP_00392012.1| COG1419: Flagellar GTP-binding protein [Bacillus anthracis str.
           A2012]
 gi|254759815|ref|ZP_05211839.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           Australia 94]
 gi|49178537|gb|AAT53913.1| flagellar biosynthetic protein FlhF, putative [Bacillus anthracis
           str. Sterne]
          Length = 281

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 19/239 (7%)

Query: 64  QKIVEELLTKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGV 119
           Q  VE+     YA+ + V  +       E+I  +L  +S  FN +  F      I ++G 
Sbjct: 35  QNDVEQYFIHAYAEKLKVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGP 94

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
            GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  +AA
Sbjct: 95  TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEAA 152

Query: 180 ---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
              AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  L +
Sbjct: 153 MTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICLTL 203

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
             +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 204 SASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 261


>gi|153836967|ref|ZP_01989634.1| flagellar biosynthesis protein FlhF [Vibrio parahaemolyticus
           AQ3810]
 gi|161511052|ref|NP_798613.2| flagellar biosynthesis regulator FlhF [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365246|ref|ZP_05777803.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus K5030]
 gi|260878796|ref|ZP_05891151.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus
           AN-5034]
 gi|260897391|ref|ZP_05905887.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus
           Peru-466]
 gi|149749740|gb|EDM60485.1| flagellar biosynthesis protein FlhF [Vibrio parahaemolyticus
           AQ3810]
 gi|308088246|gb|EFO37941.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus
           Peru-466]
 gi|308094264|gb|EFO43959.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus
           AN-5034]
 gi|308115462|gb|EFO53002.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus K5030]
 gi|328474455|gb|EGF45260.1| flagellar biosynthesis regulator FlhF [Vibrio parahaemolyticus
           10329]
          Length = 503

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 285 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 344

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 345 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 398

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ ++ F  +   +G I+TK+D +   G  
Sbjct: 399 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCILTKLDESLSLGEF 445

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           I +V+ + +PV ++  G+ +
Sbjct: 446 ISVVIQNAMPVAYIANGQRV 465


>gi|324325789|gb|ADY21049.1| flagellar biosynthesis regulator FlhF [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 436

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +S  FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFESATMITEEEVIEYILEDMSSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|6952811|gb|AAF32412.1| flagellar biosynthesis protein FlhF [Vibrio parahaemolyticus]
          Length = 503

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 285 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 344

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 345 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 398

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ ++ F  +   +G I+TK+D +   G  
Sbjct: 399 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCILTKLDESLSLGEF 445

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           I +V+ + +PV ++  G+ +
Sbjct: 446 ISVVIQNAMPVAYIANGQRV 465


>gi|152975185|ref|YP_001374702.1| flagellar biosynthesis regulator FlhF [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023937|gb|ABS21707.1| GTP-binding signal recognition particle SRP54 G- domain [Bacillus
           cytotoxicus NVH 391-98]
          Length = 434

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           F      I ++G  GVGKTT I K++ ++      V     D  R   + QL+ +     
Sbjct: 235 FEKDVQTIALIGPTGVGKTTTIAKMAWQLHGQKKTVGFITTDHSRIGTVQQLQEYVKAIG 294

Query: 167 ADFVCSEIGSDAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           A+ +   +  +AA   AL Y  FK  +  ++D + IDTAG+   N      + +MI ++K
Sbjct: 295 AEVIA--VRDEAAMERALTY--FK--EEVRMDYIFIDTAGQ---NYRTAETVAEMIEMMK 345

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           R++   P S+   L A+     + ++          G+I TK D TA  G L+ I     
Sbjct: 346 RVN---PDSICLTLSASMKSKDMIEIITNFKEIHIDGIIFTKFDETASSGELLKIPAVSS 402

Query: 284 IPVYFLGVGEGI 295
            P+  +  G+ +
Sbjct: 403 APIVLMTDGQDV 414


>gi|332284012|ref|YP_004415923.1| flagellar biosynthesis regulator FlhF [Pusillimonas sp. T7-7]
 gi|330427965|gb|AEC19299.1| flagellar biosynthesis regulator FlhF [Pusillimonas sp. T7-7]
          Length = 769

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 36/210 (17%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGL-KVMLAAGDTFRSAAIDQLKIWAD 163
           D   R   I +VG  GVGKTT I KL+ + +  AG   ++L   DT+R  A +QLKI+  
Sbjct: 157 DLWARGRAIALVGPTGVGKTTTIAKLAARCVRRAGPDSLVLLTTDTYRIGAHEQLKIYGQ 216

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKV---DVLIIDTAG---RLH---NNSILMAG 214
                 V   +  D   L      QA  ++V     L+ID  G   R H     + ++AG
Sbjct: 217 MMR---VPVHVAQDVDEL------QAIIRQVHPDQTLLIDNVGISQRDHYIAEQAAMLAG 267

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT---GLIMTKMDGTAR 271
            G+            P S L VL+AT+  + L +V   +   G +   G I+TK+D  +R
Sbjct: 268 AGR------------PVSRLLVLNATSHGDTLDEVARSYVNDGGSPLAGCIITKVDEASR 315

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGI-NDLEP 300
            G  +   + +++P++F+ +G+ +  DL P
Sbjct: 316 TGASLDTALRYQLPIHFVSIGQKVPEDLMP 345


>gi|30261776|ref|NP_844153.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           Ames]
 gi|30256004|gb|AAP25639.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. Ames]
          Length = 270

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 19/239 (7%)

Query: 64  QKIVEELLTKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGV 119
           Q  VE+     YA+ + V  +       E+I  +L  +S  FN +  F      I ++G 
Sbjct: 24  QNDVEQYFIHAYAEKLKVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGP 83

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
            GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  +AA
Sbjct: 84  TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEAA 141

Query: 180 ---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
              AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  L +
Sbjct: 142 MTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICLTL 192

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
             +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 193 SASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 250


>gi|332295034|ref|YP_004436957.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332178137|gb|AEE13826.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 352

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 84/207 (40%), Gaps = 33/207 (15%)

Query: 102 PFNWDFSHRPHV--ILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQL 158
           PF   F+ R     +  +G  G GKTT I K++ +MS    K V L   DTFR AA+DQL
Sbjct: 140 PF---FNERDETSALAFLGPTGAGKTTTIAKIAARMSLLMKKRVCLITLDTFRIAALDQL 196

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG--RLHNN------SI 210
           K +AD     F  +    +   +      + +   +DV +IDT G     +N      + 
Sbjct: 197 KAYADIMDLPFFVAHSPKELKEVV-----KKEKSSIDVFLIDTMGFSPFQDNKFKEISAF 251

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           L  GI   I +              VL A      L      +       +I TK+D   
Sbjct: 252 LSTGINTEIHL--------------VLCANYKSQELGHYINKYKTLNPVSIIWTKLDEVI 297

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGIND 297
             G +I + + + +P+   G G+ + D
Sbjct: 298 SLGHIIELSIENNLPISLFGTGQSVPD 324


>gi|149188100|ref|ZP_01866395.1| flagellar biosynthesis regulator FlhF [Vibrio shilonii AK1]
 gi|148838088|gb|EDL55030.1| flagellar biosynthesis regulator FlhF [Vibrio shilonii AK1]
          Length = 506

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 29/193 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           ++ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+         
Sbjct: 295 IVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVR 354

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVLK 223
            ++   + A + Y      Q +   +++IDTAG      RL      LM   G++I    
Sbjct: 355 VAKDSEELADVLY------QLRNRRLVLIDTAGMGQRDVRLSEQLDTLMQESGEVI---- 404

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                  HS L VL AT  +  L++ ++ F  +   +G IMTK+D +   G  I +VV +
Sbjct: 405 -------HSYL-VLPATAQRQVLQETLDHFRRIP-LSGCIMTKLDESLSLGEFISVVVQN 455

Query: 283 KIPVYFLGVGEGI 295
            +PV ++  G+ +
Sbjct: 456 ALPVTYIANGQRV 468


>gi|28807227|dbj|BAC60497.1| flagellar biosynthesis protein FlhF [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 489

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 271 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 330

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 331 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 384

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ ++ F  +   +G I+TK+D +   G  
Sbjct: 385 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCILTKLDESLSLGEF 431

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           I +V+ + +PV ++  G+ +
Sbjct: 432 ISVVIQNAMPVAYIANGQRV 451


>gi|229160733|ref|ZP_04288725.1| hypothetical protein bcere0009_15230 [Bacillus cereus R309803]
 gi|228622748|gb|EEK79582.1| hypothetical protein bcere0009_15230 [Bacillus cereus R309803]
          Length = 435

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 30/245 (12%)

Query: 64  QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
           Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F  +   I ++G
Sbjct: 188 QNDVEQYFIHAYAEKLKVKFEKATMITEEEVIEYILEDMKSHFNTENVFEKKVQTIALIG 247

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+        D+V + IGS+ 
Sbjct: 248 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DYVKT-IGSEV 298

Query: 179 AALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            A+  E+        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   
Sbjct: 299 IAVRDESAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP--D 351

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  + 
Sbjct: 352 YICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMT 410

Query: 291 VGEGI 295
            G+ +
Sbjct: 411 DGQDV 415


>gi|70943991|ref|XP_741976.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56520694|emb|CAH80619.1| hypothetical protein PC000130.04.0 [Plasmodium chabaudi chabaudi]
          Length = 201

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 46/93 (49%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +VIL VG+ G GKTT   K +      G K  L   DTFR+ A DQLK  A +    F  
Sbjct: 102 NVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALICADTFRAGAFDQLKQNAAKVKIPFYG 161

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           S    D   +A +        K D++I+D++GR
Sbjct: 162 SYSEVDPVKIATDGVNAFLKDKYDLIIVDSSGR 194


>gi|145631516|ref|ZP_01787284.1| Signal recognition particle protein [Haemophilus influenzae R3021]
 gi|144982861|gb|EDJ90378.1| Signal recognition particle protein [Haemophilus influenzae R3021]
          Length = 180

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 11/159 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNLA-TQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +K + +    KV++ + D +R AAI QL+  A     DF
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDF 159


>gi|260776435|ref|ZP_05885330.1| flagellar biosynthesis protein FlhF [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607658|gb|EEX33923.1| flagellar biosynthesis protein FlhF [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 493

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 34/210 (16%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAA 154
           +P+SK    D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A
Sbjct: 269 IPISK---QDILKRGGVVALLGPTGVGKTTTVAKLAARAAMEFGSDNVALVTTDTYRIGA 325

Query: 155 IDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHN 207
            +QL I+         C+ ++  D+  LA   +   Q +   ++++DTAG      RL  
Sbjct: 326 HEQLSIYGRIMG----CAVKVAKDSKELADVIY---QLRNRRLILVDTAGMGQRDVRLSE 378

Query: 208 N-SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTK 265
               LM   G++I           HS L VL AT  +  L++ ++ F  +   +G I+TK
Sbjct: 379 QLDTLMHESGEVI-----------HSYL-VLPATAQRKVLQETIDHFKRIP-LSGCILTK 425

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           +D +   G  + +VV + +PV ++  G+ +
Sbjct: 426 LDESLSLGEFVSVVVQNSLPVAYIANGQRV 455


>gi|78485090|ref|YP_391015.1| flagellar biosynthesis regulator FlhF [Thiomicrospira crunogena
           XCL-2]
 gi|78363376|gb|ABB41341.1| Flagellar biosynthesis component FlhF [Thiomicrospira crunogena
           XCL-2]
          Length = 388

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 121/258 (46%), Gaps = 28/258 (10%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L++  IG  +AQ++V ++       D +   VL  +     + ++P+    + D      
Sbjct: 123 LVKLGIGWDLAQRLVSDV---NANNDQAWSEVLASI-----EAMLPVD---DRDIIESGG 171

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169
           ++ +VG  GVGKTT I K++ +  M ++  ++ L   D ++  A  QLK +AD       
Sbjct: 172 IVALVGPTGVGKTTTIAKMASRFVMRNSSSQIALVTTDCYKIGAQAQLKTFADLMGVPVH 231

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V +  G   + L+  A K+       +++IDTAG    + +L   + K    L  +  + 
Sbjct: 232 VVNSEGEMYSLLSSLATKK-------LILIDTAGISQKDILLTQQLTKQKAGLNHIRNYL 284

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 V+ A T  + ++ +       G  G I+TK+D   + G ++ +++ +++ + +L
Sbjct: 285 ------VMSAATQLSVMKDIVRSFDQVGLKGCILTKVDEALQLGNILTVLIENQLSLSYL 338

Query: 290 GVGEGI-NDLEPFVAKDF 306
             G+ +  DLEP  A+D 
Sbjct: 339 SGGQRVPEDLEPVKARDL 356


>gi|309804278|ref|ZP_07698355.1| signal recognition particle protein [Lactobacillus iners LactinV
           11V1-d]
 gi|308163681|gb|EFO65951.1| signal recognition particle protein [Lactobacillus iners LactinV
           11V1-d]
          Length = 128

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%)

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           +D   P +++ V DA TGQ A    E F++    TGLI+TK+DG  RGG  + I     +
Sbjct: 7   VDVAHPENIILVADAMTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGL 66

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F G GE + +L+ F     ++ I G  D
Sbjct: 67  PILFTGQGEKLTELDTFHPDRMASRILGMGD 97


>gi|260772377|ref|ZP_05881293.1| flagellar biosynthesis protein FlhF [Vibrio metschnikovii CIP
           69.14]
 gi|260611516|gb|EEX36719.1| flagellar biosynthesis protein FlhF [Vibrio metschnikovii CIP
           69.14]
          Length = 488

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 15/195 (7%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 270 DILQRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALITTDTYRIGAHEQLSIYGR 329

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                     +  D+  LA +   Q + +++  +++DTAG    +      + + +  L 
Sbjct: 330 IMGCPV---RVAKDSKELA-DVIHQLRNRRL--ILVDTAGMGQRD----VRLSEQLDTLM 379

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           +      HS L VL AT  +  L++ +E F  +   +G IMTK+D     G  + +VV +
Sbjct: 380 QESDEVIHSYL-VLPATAQRKVLQETIEHFRRIP-LSGCIMTKLDECLSLGEFVSVVVQN 437

Query: 283 KIPVYFLGVGEGIND 297
            +PV ++  G+ + +
Sbjct: 438 ALPVAYIANGQRVPE 452


>gi|205356447|ref|ZP_03223211.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205345634|gb|EDZ32273.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 484

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 14/193 (7%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +  ++++VG  GVGKTT + KL+ + +  D   K  +   DT+R  A++QL  +A     
Sbjct: 281 KQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKL 340

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             + S    D      EA K       +V+++DT G   N+    + + K    L  +  
Sbjct: 341 PIIDSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--MHS 389

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
           +A   V  V+ A T Q  L ++    +      LI+TK D T   G +  +V    IP+ 
Sbjct: 390 NAEIDVNLVVSANTKQEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLS 449

Query: 288 FLGVGEGI-NDLE 299
           F  +G+ + +DLE
Sbjct: 450 FFSIGQEVPDDLE 462


>gi|57237074|ref|YP_178086.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni RM1221]
 gi|57165878|gb|AAW34657.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni RM1221]
 gi|315057505|gb|ADT71834.1| Flagellar biosynthesis protein FlhF [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 484

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 14/193 (7%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +  ++++VG  GVGKTT + KL+ + +  D   K  +   DT+R  A++QL  +A     
Sbjct: 281 KQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKL 340

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             + S    D      EA K       +V+++DT G   N+    + + K    L  +  
Sbjct: 341 PIIDSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--MHS 389

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
           +A   V  V+ A T Q  L ++    +      LI+TK D T   G +  +V    IP+ 
Sbjct: 390 NAEIDVNLVVSANTKQEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLS 449

Query: 288 FLGVGEGI-NDLE 299
           F  +G+ + +DLE
Sbjct: 450 FFSIGQEVPDDLE 462


>gi|308173603|ref|YP_003920308.1| GTPase [Bacillus amyloliquefaciens DSM 7]
 gi|307606467|emb|CBI42838.1| GTPase involved in the export of flagella [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553465|gb|AEB23957.1| flagellar biosynthesis regulator FlhF [Bacillus amyloliquefaciens
           TA208]
 gi|328911744|gb|AEB63340.1| GTPase involved in the export of flagella [Bacillus
           amyloliquefaciens LL3]
          Length = 363

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 21/252 (8%)

Query: 50  EDLLIRSDIGVAVAQKIVEELLTKRYAK-DVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           E LL ++ +       ++ ELL    A  D++ + V   + +L+ K L    +   W   
Sbjct: 113 ERLLKQAGLPDHTQNAVLSELLRSSIASGDLTDENVNSKLQDLLVKKLPSADR---WQEG 169

Query: 109 HRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            +   +++ G  G GKTT + KL+   M     K+     DT+R AA++QLK +A+   A
Sbjct: 170 IQSKYVVLFGSTGAGKTTTLAKLAASSMLTEHKKIAFMTTDTYRIAAVEQLKTYAELLQA 229

Query: 168 DF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              VC     +    A E F +      D + IDTAGR       +  + +MI     L 
Sbjct: 230 PLEVC--YSKEECLKAQEKFAE-----YDHVFIDTAGRNFKEEQYITELQEMIPFDSGL- 281

Query: 227 PHAPHSVLQVLDATTGQNALRQV-EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                S L VL A+     ++QV + F  V      I TK D TA  G +  ++   +I 
Sbjct: 282 ----QSFL-VLSASAKYEDMKQVLKQFSGVP-VNQFIFTKADETASLGSVFQLLSESRIG 335

Query: 286 VYFLGVGEGIND 297
             +L  G+ + +
Sbjct: 336 AAYLTNGQDVPE 347


>gi|269961635|ref|ZP_06175997.1| Flagellar biosynthesis protein flhF [Vibrio harveyi 1DA3]
 gi|269833676|gb|EEZ87773.1| Flagellar biosynthesis protein flhF [Vibrio harveyi 1DA3]
          Length = 493

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 275 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEFGADNVALVTTDTYRIGAHEQLSIYGR 334

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 335 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 388

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ ++ F  +   +G I+TK+D +   G  
Sbjct: 389 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCILTKLDESLSLGEF 435

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           I +V+ + +PV ++  G+ +
Sbjct: 436 ISVVIQNAMPVAYIANGQRV 455


>gi|156975415|ref|YP_001446322.1| flagellar biosynthesis regulator FlhF [Vibrio harveyi ATCC
           BAA-1116]
 gi|156527009|gb|ABU72095.1| hypothetical protein VIBHAR_03146 [Vibrio harveyi ATCC BAA-1116]
          Length = 503

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 285 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEFGADNVALVTTDTYRIGAHEQLSIYGR 344

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  ++ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 345 IMGCPVRVAKDSNELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 398

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ ++ F  +   +G I+TK+D +   G  
Sbjct: 399 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCILTKLDESLSLGEF 445

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           I +V+ + +PV ++  G+ +
Sbjct: 446 ISVVIQNAMPVAYIANGQRV 465


>gi|67624587|ref|XP_668576.1| signal recognition particle protein SRP54 [Cryptosporidium hominis
           TU502]
 gi|54659796|gb|EAL38359.1| signal recognition particle protein SRP54 [Cryptosporidium hominis]
          Length = 296

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 44/86 (51%)

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  V+ V+D+  GQ    Q   F        +I+TK+DG A+GGG +  V     P+ F+
Sbjct: 10  PDDVVFVMDSHIGQACYDQAMAFCNAVDVGSVIITKLDGHAKGGGALSAVAATGAPIIFI 69

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE  ++ EPF  K F + + G  D
Sbjct: 70  GTGEHFDEFEPFETKGFVSRLLGLGD 95


>gi|327441035|dbj|BAK17400.1| flagellar GTP-binding protein [Solibacillus silvestris StLB046]
          Length = 396

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 14/194 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S+    I V+G  GVGKTT I K++ + + +   K+     DT+R AAI+QLK +A    
Sbjct: 194 SYEKKYINVLGPTGVGKTTTIAKMAARAVLEKKKKIGFITTDTYRIAAIEQLKTYAALLQ 253

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           A        +D A  A + F       +D++ IDTAGR +  +  +  +  +I+  ++++
Sbjct: 254 APVEVVYNPTDYAE-ALQKFDH-----LDLIFIDTAGRNYKEAKYVDDLKSLIQFSEQVE 307

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH-KIP 285
            +       VL  T+ Q  L  +    A       I TK+D T   G +  +++ + K  
Sbjct: 308 SYL------VLSLTSKQKDLESIIEQFANLHIEKFIFTKLDETNSIGTMFNLMIKYNKGL 361

Query: 286 VYFLGVGEGINDLE 299
            Y+    E   D+E
Sbjct: 362 AYYTNGQEVPEDIE 375


>gi|304438445|ref|ZP_07398385.1| flagellar biosynthesis protein FlhF [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304368528|gb|EFM22213.1| flagellar biosynthesis protein FlhF [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 466

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 20/165 (12%)

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA--FKQAQAK-- 192
           +  LK  L   DT+R +A++QLK +A          EI      + Y A   K+A A+  
Sbjct: 301 EQNLKGALITADTYRISAVEQLKKYA----------EILGLPVEVVYSATDLKKAIARHR 350

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D +++DTAGR   N   M  +  ++    R++ H     L V   T  Q+A++ +E F
Sbjct: 351 SKDFVLVDTAGRSQYNEFQMEELTSLLAAYARMEKH-----LVVSATTKEQDAVQIIERF 405

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            A      +I TKMD T   G ++ ++    +P+ FL  G+ + D
Sbjct: 406 -APCKPDCIIFTKMDETQTFGMVLNLLANRGLPLSFLSNGQSVPD 449


>gi|229166626|ref|ZP_04294378.1| hypothetical protein bcere0007_15970 [Bacillus cereus AH621]
 gi|228616880|gb|EEK73953.1| hypothetical protein bcere0007_15970 [Bacillus cereus AH621]
          Length = 436

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 20/240 (8%)

Query: 64  QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
           Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I ++G
Sbjct: 189 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +     A+ +   +  +A
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGAEVIA--VRDEA 306

Query: 179 A---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           A   AL Y  FK+  +  VD ++IDTAG+ +  S     + +MI  + +++P   +  L 
Sbjct: 307 AMTRALTY--FKEEAS--VDYILIDTAGKNYRTS---ETVEEMIETMGQVEP--DYICLT 357

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 358 LSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|169831893|ref|YP_001717875.1| flagellar biosynthesis regulator FlhF [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638737|gb|ACA60243.1| GTP-binding signal recognition particle SRP54, G- domain
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 413

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 15/202 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           ++  VG  GVGKTT + K++ + +   G    +   DT+R  A++QL I+A+        
Sbjct: 217 IMAFVGPTGVGKTTTLAKMAAQYTLFHGKSCAIITIDTYRIGAVEQLNIYAEIMGVPLEI 276

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +    D A    +A ++ Q K  + + +DTAGR   NS  +A +     VL       P 
Sbjct: 277 AMSPQDFA----KAVQRHQNK--EFIFVDTAGRPARNSEKVAELHSYFAVLDE-----PA 325

Query: 232 SVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            V+ VL + T  ++ LR V  F  V   + LI TK+D T   G ++ ++    +PV  + 
Sbjct: 326 DVILVLSSNTKHRDLLRAVRHFGKV-NYSKLIFTKVDETDTLGCILNMICHTGMPVIQIT 384

Query: 291 VGEGI-NDLEPFVAKDFSAVIT 311
            G+ + +D++    K  + ++T
Sbjct: 385 DGQNVPDDIQNMYPKKLAKLLT 406


>gi|42780863|ref|NP_978110.1| flagellar biosynthesis regulator FlhF [Bacillus cereus ATCC 10987]
 gi|42736783|gb|AAS40718.1| flagellar biosynthetic protein FlhF, putative [Bacillus cereus ATCC
           10987]
          Length = 436

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  ++  FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMTSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|320354337|ref|YP_004195676.1| flagellar biosynthetic protein FlhF [Desulfobulbus propionicus DSM
           2032]
 gi|320122839|gb|ADW18385.1| flagellar biosynthetic protein FlhF [Desulfobulbus propionicus DSM
           2032]
          Length = 437

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 17/193 (8%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWAD--R 164
           S R   I ++G  GVGKTT + K++   +   G ++ L   DT+R AA++Q+K++ +  R
Sbjct: 235 STRQRRISLIGPTGVGKTTTLAKIAAHYLGRFGGRIGLITIDTYRIAAVEQIKVYGEIMR 294

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              + V   I       A + F+      VD+++IDTAGR   N + +  +   +R    
Sbjct: 295 LPVEVV---IKPRELEEALDKFRD-----VDLVLIDTAGRSPRNGLDIQELAAFLR---- 342

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
             P        +L A T +  + Q     ++   +  I +K+D   + G L+ I   H  
Sbjct: 343 --PQWGIENNLLLSAATREREIEQTIKRFSILPISNFIFSKIDECDQLGVLLNIHYKHDT 400

Query: 285 PVYFLGVGEGIND 297
           P+ FL  G+ + +
Sbjct: 401 PISFLTNGQRVPE 413


>gi|154686057|ref|YP_001421218.1| flagellar biosynthesis regulator FlhF [Bacillus amyloliquefaciens
           FZB42]
 gi|154351908|gb|ABS73987.1| FlhF [Bacillus amyloliquefaciens FZB42]
          Length = 363

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 17/197 (8%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            W    +   +++ G  G GKTT + KL+   M     K+     DT+R AA++QLK +A
Sbjct: 165 RWQEGIQSKYVVLFGSTGAGKTTTLAKLAASSMLTEHKKIAFMTTDTYRIAAVEQLKTYA 224

Query: 163 DRTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           +   A   VC     +    A E F +      D + IDTAGR       +  + +MI  
Sbjct: 225 ELLQAPLEVC--YSKEECLKALEKFAE-----YDHVFIDTAGRNFKEEQYITELQEMIPF 277

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
              L      S L VL A+     ++Q ++ F  V      I TK D TA  G +  ++ 
Sbjct: 278 ESGL-----QSFL-VLSASAKYEDMKQGLKQFSGVP-VNQFIFTKTDETASLGSVFQVLS 330

Query: 281 THKIPVYFLGVGEGIND 297
             +I   +L  G+ + +
Sbjct: 331 ESRIGAAYLTNGQDVPE 347


>gi|88813216|ref|ZP_01128456.1| GTP-binding signal recognition particle SRP54 [Nitrococcus mobilis
           Nb-231]
 gi|88789538|gb|EAR20665.1| GTP-binding signal recognition particle SRP54 [Nitrococcus mobilis
           Nb-231]
          Length = 439

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 15/198 (7%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  VI +VG  GVGKTT + KL+ +  +      V L   D FR    +QL+ +A 
Sbjct: 215 DIVERGGVIAIVGPTGVGKTTTVAKLAARFALRHGRRHVALVTTDNFRIGGQEQLRSFAR 274

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   +    + AA+       A  +   +++IDTAG  H +  L     + ++ L+
Sbjct: 275 ILGIPVHTAHDREELAAVL------ADLRDKQLVLIDTAGMSHRDMRL----SEQLQALE 324

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             D  +P     V+ A T   AL ++         +G I++K+D     G  +  ++ ++
Sbjct: 325 TAD--SPIRAYLVVSANTQLPALCEIVRGFRKVNPSGCILSKVDEATSLGSALTALLRYR 382

Query: 284 IPVYFLGVGEGI-NDLEP 300
           +PV +LG G+ +  DL+P
Sbjct: 383 LPVAYLGTGQRVPEDLQP 400


>gi|229172417|ref|ZP_04299976.1| hypothetical protein bcere0006_15280 [Bacillus cereus MM3]
 gi|228610888|gb|EEK68151.1| hypothetical protein bcere0006_15280 [Bacillus cereus MM3]
          Length = 436

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +  +   + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDYVKKIGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|163801860|ref|ZP_02195757.1| flagellar biosynthesis protein [Vibrio sp. AND4]
 gi|159174368|gb|EDP59172.1| flagellar biosynthesis protein [Vibrio sp. AND4]
          Length = 503

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 285 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEFGADNVALVTTDTYRIGAHEQLSIYGR 344

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++   + A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 345 IMGCPVRVAKDSDELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 398

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
           ++I           HS L VL AT  +  L++ ++ F  +   +G I+TK+D +   G  
Sbjct: 399 EVI-----------HSYL-VLPATAQRRVLQETLDHFRRIP-LSGCILTKLDESLSLGEF 445

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           I +V+ + +PV ++  G+ + +
Sbjct: 446 ISVVIQNAMPVAYIANGQRVPE 467


>gi|196045051|ref|ZP_03112284.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           03BB108]
 gi|196024053|gb|EDX62727.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           03BB108]
          Length = 436

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFETATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI+ + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIKTMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|218708838|ref|YP_002416459.1| flagellar biosynthesis regulator FlhF [Vibrio splendidus LGP32]
 gi|218321857|emb|CAV17836.1| Flagellar biosynthesis protein flhF [Vibrio splendidus LGP32]
          Length = 503

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  ++ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 285 DILKRGGIVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 344

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  S+ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 345 IMGCPVRVAKDSSELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 398

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +I           +S L VL AT  +  L++ +E F  +   +G I+TK+D +   G  
Sbjct: 399 SVI-----------NSYL-VLPATAQRKVLQETIEHFRRIP-LSGCILTKLDESLSLGEF 445

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           I +V+ + +PV ++  G+ + +
Sbjct: 446 ISVVIQNALPVAYIANGQRVPE 467


>gi|229011064|ref|ZP_04168258.1| hypothetical protein bmyco0001_15160 [Bacillus mycoides DSM 2048]
 gi|228750236|gb|EEM00068.1| hypothetical protein bmyco0001_15160 [Bacillus mycoides DSM 2048]
          Length = 436

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 20/240 (8%)

Query: 64  QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
           Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I ++G
Sbjct: 189 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +     ++ +   +  +A
Sbjct: 249 PTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIA--VRDEA 306

Query: 179 A---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           A   AL+Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  L 
Sbjct: 307 AMTRALSY--FK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP--DYICLT 357

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 358 LSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|228958052|ref|ZP_04119787.1| hypothetical protein bthur0005_15630 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228801569|gb|EEM48451.1| hypothetical protein bthur0005_15630 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 436

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 106/241 (43%), Gaps = 18/241 (7%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL     + +   + SE+ +
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL-----QDNVKTIGSEVIA 301

Query: 177 --DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D AA+A       +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  L
Sbjct: 302 VRDEAAMARALTYFKEEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP--DYICL 356

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+ 
Sbjct: 357 TLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQD 415

Query: 295 I 295
           I
Sbjct: 416 I 416


>gi|15622442|dbj|BAB66433.1| 103aa long hypothetical signal recognition particle protein
           [Sulfolobus tokodaii str. 7]
          Length = 103

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 6/102 (5%)

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           +H +  L++ + +++++ K      P   + VLD+  G +AL Q + F    G   +I+T
Sbjct: 1   MHIDEDLVSELKRIVKIAK------PDLRILVLDSLAGNDALEQAKYFENNVGYDAVILT 54

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           K+D  A+GG ++ +      PV +LGVG+  + L PF A+ F
Sbjct: 55  KVDADAKGGVILSLAYELNKPVIYLGVGQDYDSLIPFDAEWF 96


>gi|163939581|ref|YP_001644465.1| flagellar biosynthesis regulator FlhF [Bacillus weihenstephanensis
           KBAB4]
 gi|163861778|gb|ABY42837.1| GTP-binding signal recognition particle SRP54 G- domain [Bacillus
           weihenstephanensis KBAB4]
          Length = 436

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 20/240 (8%)

Query: 64  QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
           Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I ++G
Sbjct: 189 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +     ++ +   +  +A
Sbjct: 249 PTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIA--VRDEA 306

Query: 179 A---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           A   AL+Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  L 
Sbjct: 307 AMTRALSY--FK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP--DYICLT 357

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 358 LSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|226939712|ref|YP_002794785.1| flagellar biosynthesis regulator FlhF [Laribacter hongkongensis
           HLHK9]
 gi|226714638|gb|ACO73776.1| FlhF [Laribacter hongkongensis HLHK9]
          Length = 506

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 32/220 (14%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-----KKMSDAGLKVM 143
           S LIH + +    P + D   +  V  +VG  GVGKTT I KL+     +K +DA   V 
Sbjct: 262 SALIHNLRV---LPESDDIVDKGGVYALVGPTGVGKTTTIAKLAARATLRKGADA---VA 315

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L   D++R  A DQLK++           +  +D A       K    K +  ++ID+ G
Sbjct: 316 LITTDSYRIGAQDQLKLYGRILQISVYAVDNEADLAL----TLKDLSHKHL--VLIDSVG 369

Query: 204 ------RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
                 RL+  + + A  G+  R ++R+          VL A    + L+ V   +   G
Sbjct: 370 IGQRDPRLNGQTQMYAASGQGERAIRRI---------LVLAANAAGHTLQDVIQRYQGEG 420

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             G I++K+D +   G  + + + H++PV+++  G+ + +
Sbjct: 421 LVGTIISKLDESPALGVALDVAIRHRLPVFYIANGQRVPE 460


>gi|114777583|ref|ZP_01452564.1| GTP-binding signal recognition particle SRP54, G-domain
           [Mariprofundus ferrooxydans PV-1]
 gi|114552054|gb|EAU54571.1| GTP-binding signal recognition particle SRP54, G-domain
           [Mariprofundus ferrooxydans PV-1]
          Length = 353

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 22/205 (10%)

Query: 100 SKPFNWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           SK   W     P    H +L  G  G GK+T+I KL+   S  G+++ L + DT R   +
Sbjct: 141 SKTIRWSRRINPGQQQHTVLFSGPAGCGKSTLIAKLAAHYSMKGIRIALISTDTERMGGL 200

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM--- 212
           D LK +A      F      SDAA +     +Q Q+ +  +L+ID+ G      I +   
Sbjct: 201 DSLKAYASTLGVPFFPLNKLSDAANI----LRQTQSAQ--LLLIDSEGWSPRRDIGLRRQ 254

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
            G+   ++  +R           VL A   +    Q+   H  +  T L  +K+D T + 
Sbjct: 255 TGLWDAMQCTER---------FLVLPANMDEEDGMQLLAHHTASAMTHLAFSKLDETQKP 305

Query: 273 GGLIPIVVTHKIPVYFLGVGEGIND 297
           G ++   +   +P+ +   G  + +
Sbjct: 306 GKIVNWSIAAGMPLGYCSFGPEVPE 330


>gi|229144384|ref|ZP_04272789.1| hypothetical protein bcere0012_15440 [Bacillus cereus BDRD-ST24]
 gi|228639015|gb|EEK95440.1| hypothetical protein bcere0012_15440 [Bacillus cereus BDRD-ST24]
          Length = 436

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 18/241 (7%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL     + +   + SE+ +
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDYSRIGTVQQL-----QDNVKTIGSEVIA 301

Query: 177 --DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D AA+        +  +VD ++IDTAG+ +  S     + +MI ++ +++P   +  L
Sbjct: 302 VRDEAAMTRALMYFKEEARVDYILIDTAGKNYRTS---ETVEEMIEMMGQVEP--DYICL 356

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+ 
Sbjct: 357 TLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQD 415

Query: 295 I 295
           I
Sbjct: 416 I 416


>gi|86146121|ref|ZP_01064447.1| flagellar biosynthesis protein [Vibrio sp. MED222]
 gi|85836068|gb|EAQ54200.1| flagellar biosynthesis protein [Vibrio sp. MED222]
          Length = 493

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 29/202 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  ++ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 275 DILKRGGIVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 334

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  S+ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 335 IMGCPVRVAKDSSELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 388

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +I           +S L VL AT  +  L++ +E F  +   +G I+TK+D +   G  
Sbjct: 389 SVI-----------NSYL-VLPATAQRKVLQETIEHFRRIP-LSGCILTKLDESLSLGEF 435

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           I +V+ + +PV ++  G+ + +
Sbjct: 436 ISVVIQNALPVAYIANGQRVPE 457


>gi|302878262|ref|YP_003846826.1| flagellar biosynthetic protein FlhF [Gallionella capsiferriformans
           ES-2]
 gi|302581051|gb|ADL55062.1| flagellar biosynthetic protein FlhF [Gallionella capsiferriformans
           ES-2]
          Length = 451

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 20/196 (10%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V  ++G  GVGKTT   KL+ +  +     KV L   D++R  A +QLKI+  
Sbjct: 220 DIVVRGGVYALIGPTGVGKTTTTAKLAARAVVRYGADKVALLTTDSYRIGAYEQLKIYG- 278

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +     V +  G+D   L   A +        +++IDT G    +           RV++
Sbjct: 279 KILGVAVHAVKGADDLRLTLAALRHKH-----LVLIDTVGMGQRDE----------RVVE 323

Query: 224 RLDPHAPHSV--LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           + D      V  L VL++T+G + L  V   +      G I TK+D  A  G ++ +VV 
Sbjct: 324 QGDMFDAAGVQRLLVLNSTSGGDTLEDVVRMYYSNKVIGCIATKLDEAANLGAILDVVVR 383

Query: 282 HKIPVYFLGVGEGIND 297
           H++ +YF+  G+ + +
Sbjct: 384 HRLVMYFMANGQRVPE 399


>gi|229096256|ref|ZP_04227229.1| hypothetical protein bcere0020_15040 [Bacillus cereus Rock3-29]
 gi|229115211|ref|ZP_04244621.1| hypothetical protein bcere0017_15060 [Bacillus cereus Rock1-3]
 gi|228668351|gb|EEL23783.1| hypothetical protein bcere0017_15060 [Bacillus cereus Rock1-3]
 gi|228687216|gb|EEL41121.1| hypothetical protein bcere0020_15040 [Bacillus cereus Rock3-29]
          Length = 436

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 30/247 (12%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+        D+V + IGS
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DYVKT-IGS 297

Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P 
Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---DTVEEMIETMGQVEP- 351

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  
Sbjct: 352 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409

Query: 289 LGVGEGI 295
           +  G+ +
Sbjct: 410 MTDGQDV 416


>gi|229043527|ref|ZP_04191236.1| hypothetical protein bcere0027_15750 [Bacillus cereus AH676]
 gi|228725749|gb|EEL76997.1| hypothetical protein bcere0027_15750 [Bacillus cereus AH676]
          Length = 436

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+        D V + IGS
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 297

Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P 
Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 351

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  
Sbjct: 352 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409

Query: 289 LGVGEGI 295
           +  G+ I
Sbjct: 410 MTDGQDI 416


>gi|56460227|ref|YP_155508.1| flagellar biosynthesis regulator FlhF [Idiomarina loihiensis L2TR]
 gi|56179237|gb|AAV81959.1| Flagellar biosynthetic protein FlhF [Idiomarina loihiensis L2TR]
          Length = 444

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 17/196 (8%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R   + +VG  GVGKTT I KL+ + +      KV L   DTFR  A +QL+ +  
Sbjct: 222 DILTRGGAVALVGPTGVGKTTTIAKLAARYAQRHGADKVALITTDTFRIGASEQLQTYG- 280

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           R     V     +   A A  A +Q       +++IDTAG    +  L   + ++I+  +
Sbjct: 281 RIIGCPVKVAKNAQELADALLALRQK-----SLILIDTAGMGQRDKRLNEQLSQLIQNSR 335

Query: 224 -RLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            R+ P+       VL AT+    L   V+ F A+   +G I TK+D     G  I + + 
Sbjct: 336 LRIRPYL------VLSATSQSQVLMDAVKQFKALP-LSGCIFTKLDECLSLGESISVAIE 388

Query: 282 HKIPVYFLGVGEGIND 297
           H +PV +L  G+ + +
Sbjct: 389 HGLPVGYLTNGQQVPE 404


>gi|330950744|gb|EGH51004.1| signal recognition particle protein [Pseudomonas syringae Cit 7]
          Length = 243

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%)

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L V+DA TGQ+A    + F      TG+I+TK+DG ARGG  + +      P+ F+G+G
Sbjct: 2   TLFVVDAMTGQDAANTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMG 61

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E    LEPF     ++ I G  D
Sbjct: 62  EKSEALEPFHPDRIASRILGMGD 84


>gi|84388126|ref|ZP_00991022.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
 gi|84377193|gb|EAP94063.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
          Length = 521

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 29/200 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  ++ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 303 DILKRGGIVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 362

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIG 216
                   ++  S+ A + Y      Q +   ++++DTAG      RL      LM   G
Sbjct: 363 IMGCPVRVAKDSSELADVIY------QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESG 416

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGL 275
            +I           +S L VL AT  +  L++ +E F  +   +G I+TK+D +   G  
Sbjct: 417 SVI-----------NSYL-VLPATAQRKVLQETIEHFRRIP-LSGCILTKLDESLSLGEF 463

Query: 276 IPIVVTHKIPVYFLGVGEGI 295
           I +V+ + +PV ++  G+ +
Sbjct: 464 ISVVIQNALPVAYIANGQRV 483


>gi|229069322|ref|ZP_04202612.1| hypothetical protein bcere0025_15270 [Bacillus cereus F65185]
 gi|228713809|gb|EEL65694.1| hypothetical protein bcere0025_15270 [Bacillus cereus F65185]
          Length = 439

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 190 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 249

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+        D V + IGS
Sbjct: 250 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 300

Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P 
Sbjct: 301 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 354

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  
Sbjct: 355 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 412

Query: 289 LGVGEGI 295
           +  G+ I
Sbjct: 413 MTDGQDI 419


>gi|225849141|ref|YP_002729305.1| flagellar biosynthetic protein FlhF [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644292|gb|ACN99342.1| flagellar biosynthetic protein FlhF [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 385

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           R  V++ +G  GVGKTT + K++  +  +   KV + + DTF++ A DQ + +++     
Sbjct: 189 RQKVLVFLGPTGVGKTTNLFKIASNLVLNKNKKVAVLSIDTFKAGAADQARSYSNILGIP 248

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F    + SD   +            VDV+++DT GR H +      +G+M   L+ LD  
Sbjct: 249 FY---LLSDPKKIRETV---DDLNFVDVILVDTIGRSHYDH---WKLGEMKETLRFLDEA 299

Query: 229 APHSVLQV-LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
               VL   ++     N +++ + F  +     L  TK+D T+  G ++ + V   IP+ 
Sbjct: 300 QYMMVLSANMNTKESFNIIKKYQKFFKIDY---LFFTKIDETSYPGVILNLTVKTGIPLT 356

Query: 288 FLGVGEGI 295
           ++  G+ +
Sbjct: 357 YISTGQNV 364


>gi|75762828|ref|ZP_00742648.1| Flagellar biosynthesis protein flhF [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228900354|ref|ZP_04064583.1| hypothetical protein bthur0014_15600 [Bacillus thuringiensis IBL
           4222]
 gi|74489682|gb|EAO53078.1| Flagellar biosynthesis protein flhF [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228859241|gb|EEN03672.1| hypothetical protein bthur0014_15600 [Bacillus thuringiensis IBL
           4222]
          Length = 436

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIYAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+       ++ +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEPD--YIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            I
Sbjct: 415 DI 416


>gi|229149976|ref|ZP_04278202.1| hypothetical protein bcere0011_15320 [Bacillus cereus m1550]
 gi|228633498|gb|EEK90101.1| hypothetical protein bcere0011_15320 [Bacillus cereus m1550]
          Length = 436

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+        D V + IGS
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 297

Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P 
Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 351

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  
Sbjct: 352 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409

Query: 289 LGVGEGI 295
           +  G+ I
Sbjct: 410 MTDGQDI 416


>gi|229132599|ref|ZP_04261447.1| hypothetical protein bcere0014_15310 [Bacillus cereus BDRD-ST196]
 gi|228650831|gb|EEL06818.1| hypothetical protein bcere0014_15310 [Bacillus cereus BDRD-ST196]
          Length = 436

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 30/245 (12%)

Query: 64  QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
           Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I ++G
Sbjct: 189 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILKDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+        D+V + IGS+ 
Sbjct: 249 PTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQ--------DYVKT-IGSEV 299

Query: 179 AALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   
Sbjct: 300 IAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP--D 352

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  + 
Sbjct: 353 YICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMT 411

Query: 291 VGEGI 295
            G+ +
Sbjct: 412 DGQDV 416


>gi|209695724|ref|YP_002263654.1| flagellar biosynthesis regulator FlhF [Aliivibrio salmonicida
           LFI1238]
 gi|208009677|emb|CAQ79976.1| flagellar biosynthesis protein FlhF [Aliivibrio salmonicida
           LFI1238]
          Length = 484

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 27/192 (14%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           ++ ++G  GVGKTT I KL+ +  M     +V L   DTFR  A +QL I+         
Sbjct: 270 IVALLGPTGVGKTTTIAKLAARAAMEYGPDQVALVTTDTFRIGAQEQLAIYGRIMGCPV- 328

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHA 229
              I  DA  LA   +   Q +   ++++DT           AG+G+  +R+ ++LD   
Sbjct: 329 --RIAKDADELATVLY---QLRNRRLILVDT-----------AGMGQRDVRLTEQLDTLM 372

Query: 230 PHSVLQ-----VLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            HS  Q     V+ AT  +  L++ ++ F  +   +G I++K+D +   G LI + + + 
Sbjct: 373 EHSGSQINSYLVMPATAQRRVLQETIDHFKRIP-LSGCILSKIDESLSLGELISVTIENG 431

Query: 284 IPVYFLGVGEGI 295
           +P+ ++  G+ +
Sbjct: 432 LPISYIANGQRV 443


>gi|228938884|ref|ZP_04101484.1| hypothetical protein bthur0008_15450 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971765|ref|ZP_04132386.1| hypothetical protein bthur0003_15420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978374|ref|ZP_04138751.1| hypothetical protein bthur0002_15780 [Bacillus thuringiensis Bt407]
 gi|228781391|gb|EEM29592.1| hypothetical protein bthur0002_15780 [Bacillus thuringiensis Bt407]
 gi|228787855|gb|EEM35813.1| hypothetical protein bthur0003_15420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820733|gb|EEM66758.1| hypothetical protein bthur0008_15450 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939384|gb|AEA15280.1| signal recognition particle protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 436

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIYAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+        D V + IGS
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 297

Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P 
Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 351

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  
Sbjct: 352 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409

Query: 289 LGVGEGI 295
           +  G+ I
Sbjct: 410 MTDGQDI 416


>gi|218896705|ref|YP_002445116.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           G9842]
 gi|218541539|gb|ACK93933.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           G9842]
          Length = 436

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIYAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+        D V + IGS
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 297

Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P 
Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEPD 352

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  
Sbjct: 353 --YICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409

Query: 289 LGVGEGI 295
           +  G+ I
Sbjct: 410 MTDGQDI 416


>gi|49477324|ref|YP_035890.1| flagellar biosynthesis regulator FlhF [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|228933055|ref|ZP_04095918.1| hypothetical protein bthur0009_15260 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229121323|ref|ZP_04250554.1| hypothetical protein bcere0016_16290 [Bacillus cereus 95/8201]
 gi|49328880|gb|AAT59526.1| flagellar biosynthetic protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|228662168|gb|EEL17777.1| hypothetical protein bcere0016_16290 [Bacillus cereus 95/8201]
 gi|228826656|gb|EEM72427.1| hypothetical protein bthur0009_15260 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 436

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|218234981|ref|YP_002366456.1| flagellar biosynthesis regulator FlhF [Bacillus cereus B4264]
 gi|218162938|gb|ACK62930.1| flagellar biosynthesis protein FlhF [Bacillus cereus B4264]
          Length = 436

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIYAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+        D V + IGS
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 297

Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P 
Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 351

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  
Sbjct: 352 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409

Query: 289 LGVGEGI 295
           +  G+ I
Sbjct: 410 MTDGQDI 416


>gi|229155342|ref|ZP_04283452.1| hypothetical protein bcere0010_15350 [Bacillus cereus ATCC 4342]
 gi|228628057|gb|EEK84774.1| hypothetical protein bcere0010_15350 [Bacillus cereus ATCC 4342]
          Length = 433

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 184 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 243

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 244 IGPTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 301

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 302 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 352

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 353 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 411

Query: 294 GI 295
            +
Sbjct: 412 DV 413


>gi|229195984|ref|ZP_04322736.1| hypothetical protein bcere0001_15450 [Bacillus cereus m1293]
 gi|228587366|gb|EEK45432.1| hypothetical protein bcere0001_15450 [Bacillus cereus m1293]
          Length = 436

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|229102370|ref|ZP_04233078.1| hypothetical protein bcere0019_15300 [Bacillus cereus Rock3-28]
 gi|228681017|gb|EEL35186.1| hypothetical protein bcere0019_15300 [Bacillus cereus Rock3-28]
          Length = 436

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +     ++ +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQGYVKTIGSEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRTS---DTVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|239817111|ref|YP_002946021.1| flagellar biosynthesis regulator FlhF [Variovorax paradoxus S110]
 gi|239803688|gb|ACS20755.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Variovorax paradoxus S110]
          Length = 784

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 115/260 (44%), Gaps = 26/260 (10%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           R+ +   L+R+ +G   + ++ + +L          Q + +  SELI  +      P + 
Sbjct: 128 RDPMRGRLLRTLLGAGFSARLSKAMLEHLPTGQSYAQGMAFVRSELIRTL------PVHE 181

Query: 106 D---FSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKI 160
           D      +  V  ++G  GVGKTT   KL+ +  M     K+ L   D++R  A +QL+I
Sbjct: 182 DEDALLAQGGVYALMGPTGVGKTTTTAKLAARCVMRFGADKLALVTTDSYRIGAYEQLRI 241

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           +    +      +  +D     +   +  Q K +  ++IDT G    +  +   I  +  
Sbjct: 242 YGQILNVPVYAVKDATDL----HLVLQDLQGKHM--VLIDTVGMSQRDRAVSDQIAMLC- 294

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--TGLIMTKMDGTARGGGLIP 277
                +   P   L +L+AT+  + L +V   +   +G+   G I TK+D     G LI 
Sbjct: 295 -----NSQRPVKRLLLLNATSHGDTLNEVVHAYRHGSGSDLAGCIFTKVDEATHPGALID 349

Query: 278 IVVTHKIPVYFLGVGEGIND 297
            V+ H++PV+++  G+ + +
Sbjct: 350 TVIRHRLPVHYVSSGQKVPE 369


>gi|126653728|ref|ZP_01725646.1| flagellar biosynthesis regulator FlhF [Bacillus sp. B14905]
 gi|126589692|gb|EAZ83828.1| flagellar biosynthesis regulator FlhF [Bacillus sp. B14905]
          Length = 398

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 28/221 (12%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            S+    I V+G  GVGKTT I K++ + + +   K+     DT+R AAI+QLK +A   
Sbjct: 199 LSYERKYINVLGPTGVGKTTTIAKMAARAVLEKKKKIGFITTDTYRIAAIEQLKTYAGLL 258

Query: 166 SADFVCSEIGSDAAALAYEA--FKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            A             +AY A  F+QA  +   +D++ IDTAGR +     +  + ++I  
Sbjct: 259 QA----------PVEIAYNATDFEQAIQRLSHLDLVFIDTAGRNYKEVKYVDDLQRLI-- 306

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
             + D  A   +  VL  TT +  +   ++ F+ +      I TK+D T   G ++ +++
Sbjct: 307 --KFDDQAESYL--VLAMTTKEKDMANIIDQFNQLP-IEKFIFTKIDETNSIGTMLNLMI 361

Query: 281 TH-KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320
            + K   Y+    E   D+E     D  AV+      GEEK
Sbjct: 362 KYNKGLAYYTNGQEVPEDIE---EADLEAVLNLFFQ-GEEK 398


>gi|228914349|ref|ZP_04077964.1| hypothetical protein bthur0012_15810 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228845343|gb|EEM90379.1| hypothetical protein bthur0012_15810 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 436

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|228964755|ref|ZP_04125862.1| hypothetical protein bthur0004_15990 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228795005|gb|EEM42504.1| hypothetical protein bthur0004_15990 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 416

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 167 LEQNDVEQYFIYAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 226

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+        D V + IGS
Sbjct: 227 IGPTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 277

Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P 
Sbjct: 278 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEPD 332

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  
Sbjct: 333 --YICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 389

Query: 289 LGVGEGI 295
           +  G+ I
Sbjct: 390 MTDGQDI 396


>gi|218902885|ref|YP_002450719.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           AH820]
 gi|218535361|gb|ACK87759.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           AH820]
          Length = 436

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAITRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|229058420|ref|ZP_04196804.1| hypothetical protein bcere0026_15320 [Bacillus cereus AH603]
 gi|228719929|gb|EEL71519.1| hypothetical protein bcere0026_15320 [Bacillus cereus AH603]
          Length = 436

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 14/239 (5%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +  +T    V +    
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV-KTIGSEVIAVRDE 305

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
            A A A   FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  L +
Sbjct: 306 PAMARALTYFK--EEARVDYILIDTAGKNYRTS---DTVEEMIETMGQVEP--DYICLTL 358

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
             +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 359 SASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|229918647|ref|YP_002887293.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Exiguobacterium sp. AT1b]
 gi|229470076|gb|ACQ71848.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Exiguobacterium sp. AT1b]
          Length = 353

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 26/191 (13%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           ++VVG  GVGKTT + KL+       G  V L   DT+R AAI+QLK +A+  S   +  
Sbjct: 154 VMVVGPTGVGKTTTLAKLAAHFKLTEGKTVGLITTDTYRIAAIEQLKTYAEIMS---IPV 210

Query: 173 EIGSDAAALAYEAFKQAQ---AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           E+  D     +  FK+A+   A+K D+++IDTAGR   +             +++   H 
Sbjct: 211 EVAYD-----FHDFKRAKQLFARK-DIVLIDTAGRNFRDPAY----------VEQFHEHH 254

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGT---TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             +   +    +  + ++ ++M ++   +   + LI TK D T+    +  +V    +PV
Sbjct: 255 DFTETSLSLVLSLTSKMKDMDMIYSQFESLPLSSLIFTKADETSDIHAMYRMVKKSGLPV 314

Query: 287 YFLGVGEGIND 297
            ++  G+ + D
Sbjct: 315 AWMTDGQEVPD 325


>gi|228952154|ref|ZP_04114246.1| hypothetical protein bthur0006_15630 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229078953|ref|ZP_04211505.1| hypothetical protein bcere0023_16150 [Bacillus cereus Rock4-2]
 gi|228704367|gb|EEL56801.1| hypothetical protein bcere0023_16150 [Bacillus cereus Rock4-2]
 gi|228807508|gb|EEM54035.1| hypothetical protein bthur0006_15630 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 439

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 190 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 249

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+        D V + IGS
Sbjct: 250 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 300

Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P 
Sbjct: 301 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 354

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  
Sbjct: 355 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 412

Query: 289 LGVGEGI 295
           +  G+ I
Sbjct: 413 MTDGQDI 419


>gi|229189869|ref|ZP_04316879.1| hypothetical protein bcere0002_15430 [Bacillus cereus ATCC 10876]
 gi|228593543|gb|EEK51352.1| hypothetical protein bcere0002_15430 [Bacillus cereus ATCC 10876]
          Length = 439

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 190 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 249

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+        D V + IGS
Sbjct: 250 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 300

Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P 
Sbjct: 301 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 354

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  
Sbjct: 355 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 412

Query: 289 LGVGEGI 295
           +  G+ I
Sbjct: 413 MTDGQDI 419


>gi|228926807|ref|ZP_04089875.1| hypothetical protein bthur0010_15230 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832920|gb|EEM78489.1| hypothetical protein bthur0010_15230 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 436

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSAAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|169827141|ref|YP_001697299.1| flagellar biosynthesis regulator FlhF [Lysinibacillus sphaericus
           C3-41]
 gi|168991629|gb|ACA39169.1| Flagellar biosynthesis protein flhF (Flagella-associated
           GTP-binding protein) [Lysinibacillus sphaericus C3-41]
          Length = 398

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 28/221 (12%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            S+    I V+G  GVGKTT I K++ + + +   K+     DT+R AAI+QLK +A   
Sbjct: 199 LSYERKYINVLGPTGVGKTTTIAKMAARAVLEKKKKIGFITTDTYRIAAIEQLKTYAGLL 258

Query: 166 SADFVCSEIGSDAAALAYEA--FKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            A             +AY A  F+QA  +   +D++ IDTAGR +     +  + ++I  
Sbjct: 259 QA----------PVEIAYNATDFEQAIQRLSHLDLVFIDTAGRNYKEIKYVDDLQRLI-- 306

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
             + D  A  S L VL  TT +  +   ++ F+ +      I TK+D T   G ++ +++
Sbjct: 307 --KFDDQA-ESFL-VLAMTTKEKDMANIIDQFNQLP-IEKFIFTKIDETNSIGTMLNLMI 361

Query: 281 TH-KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320
            + K   Y+    E   D+E     D  AV+      GEEK
Sbjct: 362 KYNKGLAYYTNGQEVPEDIE---EADLEAVLNLFFQ-GEEK 398


>gi|206974777|ref|ZP_03235692.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           H3081.97]
 gi|222095394|ref|YP_002529454.1| flagellar biosynthesis regulator flhf [Bacillus cereus Q1]
 gi|206746796|gb|EDZ58188.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           H3081.97]
 gi|221239452|gb|ACM12162.1| flagellar biosynthetic protein [Bacillus cereus Q1]
          Length = 436

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 20/240 (8%)

Query: 64  QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
           Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I ++G
Sbjct: 189 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  +A
Sbjct: 249 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEA 306

Query: 179 A---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           A   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  L 
Sbjct: 307 AMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICLT 357

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 358 LSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|228920481|ref|ZP_04083826.1| hypothetical protein bthur0011_14950 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839111|gb|EEM84407.1| hypothetical protein bthur0011_14950 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 436

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+        D V + IGS
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 297

Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P 
Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 351

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  
Sbjct: 352 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409

Query: 289 LGVGEGI 295
           +  G+ I
Sbjct: 410 MTDGQDI 416


>gi|229109227|ref|ZP_04238826.1| hypothetical protein bcere0018_14980 [Bacillus cereus Rock1-15]
 gi|229127098|ref|ZP_04256095.1| hypothetical protein bcere0015_15520 [Bacillus cereus BDRD-Cer4]
 gi|296502372|ref|YP_003664072.1| cell division protein FtsY [Bacillus thuringiensis BMB171]
 gi|110002656|emb|CAJ55244.1| flagellum-associated protein [Bacillus cereus ATCC 14579]
 gi|228656214|gb|EEL12055.1| hypothetical protein bcere0015_15520 [Bacillus cereus BDRD-Cer4]
 gi|228674237|gb|EEL29482.1| hypothetical protein bcere0018_14980 [Bacillus cereus Rock1-15]
 gi|296323424|gb|ADH06352.1| cell division protein ftsY [Bacillus thuringiensis BMB171]
          Length = 439

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 190 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 249

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+        D V + IGS
Sbjct: 250 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 300

Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P 
Sbjct: 301 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 354

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  
Sbjct: 355 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 412

Query: 289 LGVGEGI 295
           +  G+ I
Sbjct: 413 MTDGQDI 419


>gi|149194329|ref|ZP_01871426.1| flagellar biosynthesis regulator FlhF [Caminibacter mediatlanticus
           TB-2]
 gi|149135504|gb|EDM23983.1| flagellar biosynthesis regulator FlhF [Caminibacter mediatlanticus
           TB-2]
          Length = 410

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 21/212 (9%)

Query: 111 PH--VILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           PH  +++ VG  GVGKTT I KL+ + +       KV +   DT+R  A++QL  +A   
Sbjct: 209 PHKKILMFVGPTGVGKTTTIAKLAARYAYKLSTRHKVGIITLDTYRIGAVEQLMTYAKMM 268

Query: 166 SADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                     +D        F++A    +  D ++IDT G   ++   +  +   ++V  
Sbjct: 269 KLPIETVVDPND--------FEEALNSLRHNDYILIDTVGSSQHDKEKIEKLNSFLKV-- 318

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             D  A  +V  VL A T    L  +    ++      + TK+D T   G +  +++  K
Sbjct: 319 --DSFAEINVNLVLSAVTKYEDLIDIYKNFSILPIDTFVFTKLDETKSYGNVFSLLLDTK 376

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ +  +G+ + D    +  +   +I G L+
Sbjct: 377 KPISYFSIGQEVPD--DLIVANADYLINGILN 406


>gi|196038895|ref|ZP_03106202.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           NVH0597-99]
 gi|196030040|gb|EDX68640.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           NVH0597-99]
          Length = 436

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIKYILEDMRSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|285018165|ref|YP_003375876.1| flagellar GTP-binding protein flhf [Xanthomonas albilineans GPE
           PC73]
 gi|283473383|emb|CBA15888.1| probable flagellar gtp-binding protein flhf [Xanthomonas
           albilineans]
          Length = 527

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 23/191 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI ++G  G GKTT I KL+      +A   V L   DT R    +QL  +  +      
Sbjct: 320 VIALIGPTGAGKTTTIAKLASLFLERNAARDVALVTTDTVRVGGREQLHSYGRQLG--IA 377

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVD--VLIIDTAGRLHNNSILMAGIG--KMIRVLKRLD 226
             E  SDA+       +Q   +  D  +++IDTAG    +  L A +   +  RV++   
Sbjct: 378 VHEADSDAS------LQQLLQRLADYKLVLIDTAGMGQRDRALAAQLHWLRASRVVR--- 428

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                  L VL      + L +V    A A   G+I+TK+D T R G  + +VV H++P+
Sbjct: 429 ------SLLVLPTNAHFSDLDEVVRRFASADPQGVILTKLDETGRFGSALSVVVDHRLPI 482

Query: 287 YFLGVGEGIND 297
            ++  G+ + D
Sbjct: 483 TWVTDGQRVPD 493


>gi|229178179|ref|ZP_04305550.1| hypothetical protein bcere0005_15410 [Bacillus cereus 172560W]
 gi|228605309|gb|EEK62759.1| hypothetical protein bcere0005_15410 [Bacillus cereus 172560W]
          Length = 436

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+        D V + IGS
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 297

Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P 
Sbjct: 298 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 351

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  
Sbjct: 352 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409

Query: 289 LGVGEGI 295
           +  G+ I
Sbjct: 410 MTDGQDI 416


>gi|206970576|ref|ZP_03231528.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           AH1134]
 gi|206734212|gb|EDZ51382.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           AH1134]
          Length = 439

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 30/247 (12%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 190 LEQNDVEQYFIHAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 249

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+        D V + IGS
Sbjct: 250 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ--------DNVKT-IGS 300

Query: 177 DAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +  A+  EA        FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P 
Sbjct: 301 EVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEP- 354

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             +  L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  
Sbjct: 355 -DYICLTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVL 412

Query: 289 LGVGEGI 295
           +  G+ I
Sbjct: 413 MTDGQDI 419


>gi|73539439|ref|YP_299806.1| flagellar biosynthesis protein [Ralstonia eutropha JMP134]
 gi|72122776|gb|AAZ64962.1| GTP-binding signal recognition particle SRP54, G-domain [Ralstonia
           eutropha JMP134]
          Length = 804

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 24/195 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT   KL+ +  +     ++ L   D+FR  A +QL+I+ D      V
Sbjct: 177 VLALIGPTGVGKTTTTAKLAARYVLRHGPERLALLTTDSFRIGAHEQLRIYGDILG---V 233

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DAA L    F  A  K   ++IIDT G    +  L   I  +  V       AP
Sbjct: 234 PVHAVKDAADLR---FALAAMKDKHLVIIDTVGMSQRDRNLSEQIAMLAGV------QAP 284

Query: 231 HSVLQVLDATTGQNALRQVEMFHAV--------AGTTGLIMTKMDGTARGGGLIPIVVTH 282
              + +L+  +  + L   E+ HA          G  G I++K+D     G ++ +V+ H
Sbjct: 285 VQRVLLLNGASHGDTLN--EVVHAYRHDAVPEGGGVDGCIISKLDEATHLGSVLDVVIRH 342

Query: 283 KIPVYFLGVGEGIND 297
           ++PV+++  G+ + +
Sbjct: 343 RLPVFYVSTGQRVPE 357


>gi|228907404|ref|ZP_04071262.1| hypothetical protein bthur0013_15710 [Bacillus thuringiensis IBL
           200]
 gi|228852265|gb|EEM97061.1| hypothetical protein bthur0013_15710 [Bacillus thuringiensis IBL
           200]
          Length = 436

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + ++     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIYAYAEKLKIKFENATMITEEEVIRYILEDMKSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+       ++ +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRTS---ETVEEMIETMGQVEPD--YIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            I
Sbjct: 415 DI 416


>gi|229017057|ref|ZP_04173976.1| hypothetical protein bcere0030_16210 [Bacillus cereus AH1273]
 gi|229023238|ref|ZP_04179748.1| hypothetical protein bcere0029_15790 [Bacillus cereus AH1272]
 gi|228738032|gb|EEL88518.1| hypothetical protein bcere0029_15790 [Bacillus cereus AH1272]
 gi|228744230|gb|EEL94313.1| hypothetical protein bcere0030_16210 [Bacillus cereus AH1273]
          Length = 436

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 27/217 (12%)

Query: 89  SELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            E+I  +L  +   FN +  F      I ++G  GVGKTT + K++ +       V    
Sbjct: 217 EEVIGYILEDMKSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHAKRKTVGFIT 276

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA--------FKQAQAKKVDVLI 198
            D  R   + QL+        D+V + IGS+  A+  EA        FK+    +VD ++
Sbjct: 277 TDHSRIGTVQQLQ--------DYVKT-IGSEVIAVRDEAAMTRALTYFKEES--RVDYIL 325

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDTAG+ +  S     I +MI  + +++P   +  L +  +   ++ +  +  F  +   
Sbjct: 326 IDTAGKNYRTS---ETIEEMIETMGQVEP--DYICLTLSASMKSKDMIEIITNFKDI-HI 379

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 380 DGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|118477203|ref|YP_894354.1| flagellar biosynthesis regulator FlhF [Bacillus thuringiensis str.
           Al Hakam]
 gi|225863629|ref|YP_002749007.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           03BB102]
 gi|229183963|ref|ZP_04311178.1| hypothetical protein bcere0004_15300 [Bacillus cereus BGSC 6E1]
 gi|118416428|gb|ABK84847.1| flagellar biosynthetic protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|225788841|gb|ACO29058.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           03BB102]
 gi|228599488|gb|EEK57093.1| hypothetical protein bcere0004_15300 [Bacillus cereus BGSC 6E1]
          Length = 436

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIKYILEDMRSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|116694209|ref|YP_728420.1| flagellar biosynthesis regulator FlhF [Ralstonia eutropha H16]
 gi|113528708|emb|CAJ95055.1| Flagellar GTP-binding protein [Ralstonia eutropha H16]
          Length = 776

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 24/195 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ +VG  GVGKTT   KL+ +  +     K+ L   D+FR  A +QL+I+ D      V
Sbjct: 173 VLALVGPTGVGKTTTTAKLAARFVLRHGADKLALLTTDSFRIGAHEQLRIYGDILG---V 229

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DAA L    F  A  K   ++IIDT G    +  L   I  +  V       AP
Sbjct: 230 PVHAVKDAADLR---FALAAMKDKHLVIIDTVGMSQRDRSLSEQIAMLAGV------PAP 280

Query: 231 HSVLQVLDATTGQNALRQVEMFHAV--------AGTTGLIMTKMDGTARGGGLIPIVVTH 282
              + +L+  +  + L   E+ HA          G  G I++K+D     G ++ +V+ H
Sbjct: 281 VQRVLLLNGASHGDTLN--EVVHAYRHDAAPDGGGIDGCIISKLDEATHLGSVLDVVIRH 338

Query: 283 KIPVYFLGVGEGIND 297
           ++PV++   G+ + +
Sbjct: 339 RLPVFYASTGQRVPE 353


>gi|148926870|ref|ZP_01810548.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844447|gb|EDK21555.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 484

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 14/190 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           ++++VG  GVGKTT + KL+ + +  D   K  +   DT+R  A++QL  +A       +
Sbjct: 284 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII 343

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S    D      EA K       +V+++DT G   N+    + + K    L  +  +A 
Sbjct: 344 DSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--MHSNAE 392

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V  V+ A T    L ++    +      LI+TK D T   G +  +V    IP+ F  
Sbjct: 393 IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSFFS 452

Query: 291 VGEGI-NDLE 299
           +G+ + +DLE
Sbjct: 453 IGQEVPDDLE 462


>gi|192359435|ref|YP_001982608.1| flagellar biosynthesis protein FlhF [Cellvibrio japonicus Ueda107]
 gi|190685600|gb|ACE83278.1| flagellar biosynthesis protein FlhF [Cellvibrio japonicus Ueda107]
          Length = 527

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 37/192 (19%)

Query: 117 VGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWA-----------D 163
           VG  GVGKTT IGKL+ +  +     KV L   DT+R AA DQL+  A           +
Sbjct: 331 VGPTGVGKTTTIGKLAARYVLQHGADKVALITTDTYRIAAHDQLRSLARILRVPVKVVDE 390

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
             S D V   +                 +   +++IDTAG  H +  L A +  +   LK
Sbjct: 391 ANSLDMVLRSL-----------------RHCSLVLIDTAGFRHGDPHLKAQLHALAE-LK 432

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           +++ +       V+   +    L+     +  A   G I+TK+D TA  G  + +V+  +
Sbjct: 433 QVNTYL------VMSCNSQAQMLKASIHAYGAARLQGCILTKLDETASMGEALGVVMQSR 486

Query: 284 IPVYFLGVGEGI 295
           +PV +   G+ I
Sbjct: 487 LPVAYTTDGQDI 498


>gi|70729055|ref|YP_258791.1| flagellar biosynthesis regulator FlhF [Pseudomonas fluorescens
           Pf-5]
 gi|68343354|gb|AAY90960.1| flagellar biosynthesis protein FlhF [Pseudomonas fluorescens Pf-5]
          Length = 440

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D++R  A +QLK      +    
Sbjct: 222 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNIALVSMDSYRIGAQEQLKTLGRILNVSVT 281

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G   A    +A      K+V  ++IDTAG   ++  L   +    G+ IR    L 
Sbjct: 282 HVDPGQSLA----QALDPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIRAKNYL- 334

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 335 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 385

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 386 AYLTDGPRIPD 396


>gi|86149714|ref|ZP_01067944.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597714|ref|ZP_01100947.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218561749|ref|YP_002343528.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|9297094|sp|O52908|FLHF_CAMJE RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|85839982|gb|EAQ57241.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190018|gb|EAQ93994.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359455|emb|CAL34238.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284925360|gb|ADC27712.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927747|gb|EFV07074.1| SRP54-type protein, GTPase domain protein [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315929661|gb|EFV08839.1| SRP54-type protein, GTPase domain protein [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 484

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 14/193 (7%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +  ++++VG  GVGKTT + KL+ + +  D   K  +   DT+R  A++QL  +A     
Sbjct: 281 KQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKL 340

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             + S    D      EA K       +V+++DT G   N+    + + K    L  +  
Sbjct: 341 PIIDSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--MHS 389

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
           +A   V  V+ A T    L ++    +      LI+TK D T   G +  +V    IP+ 
Sbjct: 390 NAEIDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLS 449

Query: 288 FLGVGEGI-NDLE 299
           F  +G+ + +DLE
Sbjct: 450 FFSIGQEVPDDLE 462


>gi|52143686|ref|YP_083141.1| flagellar biosynthesis regulator FlhF [Bacillus cereus E33L]
 gi|51977155|gb|AAU18705.1| flagellar biosynthetic protein [Bacillus cereus E33L]
          Length = 436

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 20/240 (8%)

Query: 64  QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
           Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I ++G
Sbjct: 189 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIKYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  +A
Sbjct: 249 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEA 306

Query: 179 A---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           A   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  L 
Sbjct: 307 AMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICLT 357

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 358 LSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|296121395|ref|YP_003629173.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Planctomyces limnophilus DSM 3776]
 gi|296013735|gb|ADG66974.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Planctomyces limnophilus DSM 3776]
          Length = 626

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 24/242 (9%)

Query: 62  VAQKIVEELL---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           +A+K++++L    T +   D    R+L  +  LI + L  LS+P        PHV+ +VG
Sbjct: 363 IARKLLKKLACLATPKELTDPQASRLL--LLSLIEQELN-LSRPVQI-APGTPHVVALVG 418

Query: 119 VNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD--RTSADFVCSEIG 175
             GVGKTT + KL+ +       KV L   DTFR AA++QLK +A+        V S   
Sbjct: 419 PTGVGKTTTLAKLAAQARLREHRKVGLITVDTFRIAAVEQLKTYAEIMELPMRVVSSPAE 478

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
             +A   Y           D+++IDT+GR   + +    +  ++      + HA H +  
Sbjct: 479 MRSAMDDYATM--------DLVLIDTSGRSPYDELKNQELKAIL-----AEAHA-HEIHL 524

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            +   +   +   +       G   LI+TK+D     G ++   +   +P+ +L  G+ +
Sbjct: 525 CISMASDPRSTTMIASKFITIGANQLILTKLDEIQDYGAVLATNLNSTLPLSYLTTGQEV 584

Query: 296 ND 297
            D
Sbjct: 585 PD 586


>gi|157738157|ref|YP_001490841.1| flagellar biosynthesis (GTP-binding) protein FlhF [Arcobacter
           butzleri RM4018]
 gi|315636300|ref|ZP_07891550.1| flagellar biosynthesis (GTP-binding) protein FlhF [Arcobacter
           butzleri JV22]
 gi|157700011|gb|ABV68171.1| flagellar biosynthesis (GTP-binding) protein FlhF [Arcobacter
           butzleri RM4018]
 gi|315479389|gb|EFU70072.1| flagellar biosynthesis (GTP-binding) protein FlhF [Arcobacter
           butzleri JV22]
          Length = 383

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 16/202 (7%)

Query: 102 PFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAI 155
           P   +   RP    +I++VG  GVGKTT I KL+ + +       KV +   D+FR  A+
Sbjct: 170 PIKHEVPLRPQQRKIIMMVGPTGVGKTTTISKLAARYAYKLGQNYKVGIVTLDSFRVGAV 229

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+ + +         +   D A    EA    + K  + + IDTAG    +   +  I
Sbjct: 230 EQLQAYTNIMRLPLEVVKKPDDLA----EAL--LRLKDCNYIFIDTAGSSQYDIDKIELI 283

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
               + ++ L    P   + VL A    + L ++   +++     L  TK+D T   G L
Sbjct: 284 NDYQKKVEEL----PIEKILVLPANVKHSDLLEIYKNYSILDIDYLTFTKLDETRSFGNL 339

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           I      K  + +  +G+ + D
Sbjct: 340 ISFAHKTKKSITYFSIGQNVPD 361


>gi|296274011|ref|YP_003656642.1| flagellar biosynthetic protein FlhF [Arcobacter nitrofigilis DSM
           7299]
 gi|296098185|gb|ADG94135.1| flagellar biosynthetic protein FlhF [Arcobacter nitrofigilis DSM
           7299]
          Length = 386

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 18/216 (8%)

Query: 87  DVSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLK 141
           D  +LI + ++P+    P      H+  ++++VG  GVGKTT I KL+ + +       K
Sbjct: 163 DFFKLILRRIIPIKNEVPLR---KHQRKIMMMVGPTGVGKTTTIAKLAARYAYKLGENYK 219

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V +   D+FR  AI+QL+ + +         EI      L     +    K  + + IDT
Sbjct: 220 VGVVTLDSFRVGAIEQLQAYTNIMRLPL---EIVKKPEDLVESLLR---LKDCNYIFIDT 273

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AG    +   +  I  +    K++D      VL VL A   Q+ L  +   ++      L
Sbjct: 274 AGSSQYD---IDKIELINEFQKKVDELPIEKVL-VLPANVKQSDLMDIYTNYSRLNIDYL 329

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             TK+D T   G LI      K  + ++ +G+ + D
Sbjct: 330 TFTKLDETKSFGNLISFAHKTKKSITYMSIGQNVPD 365


>gi|209522289|ref|ZP_03270917.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia sp. H160]
 gi|209497283|gb|EDZ97510.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia sp. H160]
          Length = 338

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 18/211 (8%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+      
Sbjct: 105 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG- 163

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V      D+A L       ++ +   +++IDT G    + ++   I  + R  +    
Sbjct: 164 --VSVHAVKDSADLQ---LALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLCRAGQ---- 214

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHK 283
             P   L +L+AT+  + L +V   +  A       G I+TK+D     GG++  V+ +K
Sbjct: 215 --PVQRLLLLNATSHGDTLNEVVQAYQRAPDQQPLAGCILTKIDEATNLGGVLDTVIRYK 272

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           +PV+++  G+ + +      K F    T C+
Sbjct: 273 LPVHYVSTGQKVPENLYVATKKFLIKSTFCI 303


>gi|3913656|sp|O52256|FLHF_PSEPU RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|7677123|gb|AAF67042.1|AF183382_2 flagellar protein FlhF [Pseudomonas putida]
 gi|2853595|gb|AAC08059.1| FlhF [Pseudomonas putida]
          Length = 437

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 220 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 279

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G   AA A E   + +     V++IDTAG   ++  L   +    G+ I     L 
Sbjct: 280 YVDPGQSLAA-ALEPLLRKR-----VVLIDTAGLQASDPALRMQLETLAGRGIAAKNYL- 332

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 333 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPV 383

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 384 AYLTDGPRIPD 394


>gi|86154015|ref|ZP_01072216.1| flagellar biosynthesis protein flhF [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613495|ref|YP_999790.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167004765|ref|ZP_02270523.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85842429|gb|EAQ59643.1| flagellar biosynthesis protein flhF [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249038|gb|EAQ72000.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 484

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 14/190 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           ++++VG  GVGKTT + KL+ + +  D   K  +   DT+R  A++QL  +A       +
Sbjct: 284 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII 343

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S    D      EA K       +V+++DT G   N+    + + K    L  +  +A 
Sbjct: 344 DSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--MHSNAE 392

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V  V+ A T    L ++    +      LI+TK D T   G +  +V    IP+ F  
Sbjct: 393 IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSFFS 452

Query: 291 VGEGI-NDLE 299
           +G+ + +DLE
Sbjct: 453 IGQEVPDDLE 462


>gi|188592107|ref|YP_001796705.1| flagellar biosynthesis regulator flhf [Cupriavidus taiwanensis LMG
           19424]
 gi|170938481|emb|CAP63468.1| Putative flagellar biosynthesis protein, flagella-associated
           GTP-binding protein; GTP-binding SRP family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 779

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 24/195 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ +VG  GVGKTT   KL+ +  +     K+ L   D+FR  A +QL+I+ D      V
Sbjct: 177 VLALVGPTGVGKTTTTAKLAARYVLRHGADKLALLTTDSFRIGAHEQLRIYGDILG---V 233

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DAA L    F  A  K   ++IIDT G    +  L   I  +  V       AP
Sbjct: 234 PVHAVKDAADLR---FALAAMKDKHLVIIDTVGMSQRDRSLSEQIAMLAGV------PAP 284

Query: 231 HSVLQVLDATTGQNALRQVEMFHAV--------AGTTGLIMTKMDGTARGGGLIPIVVTH 282
              + +L+  +  + L   E+ HA          G  G I++K+D     G ++ +V+ H
Sbjct: 285 VQRVLLLNGASHGDTLN--EVVHAYRHDAAPDGGGIDGCIISKLDEATHLGSVLDVVIRH 342

Query: 283 KIPVYFLGVGEGIND 297
           ++PV++   G+ + +
Sbjct: 343 RLPVFYASTGQRVPE 357


>gi|196033363|ref|ZP_03100775.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus W]
 gi|195993797|gb|EDX57753.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus W]
          Length = 433

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 184 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIKYILEDMRSHFNTENVFEKEVQTIAL 243

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 244 IGPTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD 301

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 302 EAAMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 352

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 353 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 411

Query: 294 GI 295
            +
Sbjct: 412 DV 413


>gi|254246772|ref|ZP_04940093.1| Flagellar GTP-binding protein [Burkholderia cenocepacia PC184]
 gi|124871548|gb|EAY63264.1| Flagellar GTP-binding protein [Burkholderia cenocepacia PC184]
          Length = 421

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 18/191 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+        V
Sbjct: 191 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 247

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  LA      ++ +   +++IDT G    +      +   I +L     +AP
Sbjct: 248 PVHAVKDAGDLA---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLH--GANAP 298

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              L +L+AT+  + L +V   +  AG      G I+TK+D     GG++  V+ +K+PV
Sbjct: 299 VQRLLLLNATSHGDTLNEVVQAYRSAGEHPDLAGCILTKLDEATHLGGVLDTVIRYKLPV 358

Query: 287 YFLGVGEGIND 297
           +++  G+ + +
Sbjct: 359 HYVSTGQKVPE 369


>gi|254785488|ref|YP_003072917.1| flagellar biosynthetic protein FlhF [Teredinibacter turnerae T7901]
 gi|237684381|gb|ACR11645.1| flagellar biosynthetic protein FlhF [Teredinibacter turnerae T7901]
          Length = 506

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 18/194 (9%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGL-KVMLAAGDTFRSAAIDQLKIWAD 163
           D   +  V   VG  GVGKTT I KL+ + + D G  KV L   DT+R  A DQL+    
Sbjct: 294 DLVQQGGVFAFVGQTGVGKTTTIAKLAARYVLDHGPGKVALITTDTYRVGAYDQLRSLG- 352

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM--IRV 221
               +     + ++ + L       A  K+  +++IDTAG  H + +L   + K+     
Sbjct: 353 -RILNVPVRAVDAEHSLLRV----LASLKQFPLILIDTAGFRHGDPLLKEQLRKLDSCPA 407

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +KR+   A +S  Q + A+T   A RQ        G    ++TK+D  A  G  + ++V 
Sbjct: 408 VKRVLVLACNSQRQTMTASTHAYASRQ--------GIDACVLTKLDEAASLGEALSVLVE 459

Query: 282 HKIPVYFLGVGEGI 295
            ++PV +   G+ I
Sbjct: 460 RQLPVAYTTNGQEI 473


>gi|167838292|ref|ZP_02465151.1| flagellar biosynthesis regulator FlhF [Burkholderia thailandensis
           MSMB43]
          Length = 459

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 224 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D           A+ +   +++IDT G    +      +   I +L   D   P
Sbjct: 284 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 331

Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGTT--------GLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V + + + AG +        G I+TK+D  +  GG++  V+ 
Sbjct: 332 VQRLLLLNATSHGDTLNEVVQAYRSAAGQSEAALPDLAGCILTKLDEASNLGGVLDTVIR 391

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 392 YKLPVHYVSTGQKVPE 407


>gi|229090736|ref|ZP_04221969.1| hypothetical protein bcere0021_15600 [Bacillus cereus Rock3-42]
 gi|228692678|gb|EEL46404.1| hypothetical protein bcere0021_15600 [Bacillus cereus Rock3-42]
          Length = 370

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 20/240 (8%)

Query: 64  QKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
           Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I ++G
Sbjct: 123 QNDVEQYFIHAYAEKLKVKFENATMITEEEVIKYILEDMRSHFNTENVFEKEVQTIALIG 182

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  +A
Sbjct: 183 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEA 240

Query: 179 A---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           A   AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  L 
Sbjct: 241 AMTRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICLT 291

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 292 LSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 350


>gi|59712443|ref|YP_205219.1| flagellar biosynthesis regulator FlhF [Vibrio fischeri ES114]
 gi|59480544|gb|AAW86331.1| flagellar regulator FlhF, GTP-binding protein [Vibrio fischeri
           ES114]
          Length = 492

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 125/260 (48%), Gaps = 30/260 (11%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + +++++ ++L      +DV  +     + +L+ + + P SK    
Sbjct: 216 REPLRAMLIKRLEKMGLSEELADQLACY-IPEDVPAKDAWPALLKLLAEQI-PTSK---V 270

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  +I ++G  GVGKTT I KL+ +  M     +V L   DTFR  A +QL I+  
Sbjct: 271 DTLSRGGIIALLGPTGVGKTTTIAKLAARAAMEYGPDQVALVTTDTFRIGAQEQLAIYGR 330

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++   + A++ Y      Q +   ++++DTAG    +          +R+ +
Sbjct: 331 IMGCPVRIAKDADELASVLY------QLRNRRLVLVDTAGMGQRD----------VRLTE 374

Query: 224 RLDPHAPHSVLQ-----VLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +LD    +S  Q     V+ AT  +  L++ ++ F  +   +G I++K+D +   G LI 
Sbjct: 375 QLDTIMENSGSQINSYLVMPATAQRRVLQETIDHFKRIP-LSGCILSKIDESLSLGELIS 433

Query: 278 IVVTHKIPVYFLGVGEGIND 297
           + + + +P+ ++  G+ + +
Sbjct: 434 VTIENGLPISYIANGQRVPE 453


>gi|116331223|ref|YP_800941.1| flagellar biosynthesis regulator FlhF [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116124912|gb|ABJ76183.1| Endoflagellar biosynthesis protein, GTP-binding [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 433

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 35/200 (17%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           V+ +VG  G GKTT I KL+ K     G  V L   D +R AAI+QLK +AD     F  
Sbjct: 225 VVFLVGPTGSGKTTSIAKLAAKYFLHMGRSVSLYTTDNYRIAAIEQLKRYADTMGMPFY- 283

Query: 172 SEIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                       + FK+  A+   ++++IDTAG  H N          +  L+R+  H+ 
Sbjct: 284 -------PVKDIKKFKETLARDGSELILIDTAGYSHRN----------LEQLERM--HSF 324

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVA---------GTTGLIMTKMDGTARGGGLIPIVVT 281
           HS     D+      L  +  +H                +++TK+D     G  + +  T
Sbjct: 325 HSCFGERDSVENLLVLSAISSYHHTNTVLKAYESLNYRRILLTKLDEADFLGSFLELADT 384

Query: 282 HKIPVYFLGVGEGINDLEPF 301
           +     +  VG+ +    PF
Sbjct: 385 YSKSFTYFSVGQEV----PF 400


>gi|197335858|ref|YP_002156662.1| flagellar biosynthetic protein FlhF [Vibrio fischeri MJ11]
 gi|197317348|gb|ACH66795.1| flagellar biosynthetic protein FlhF [Vibrio fischeri MJ11]
          Length = 492

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 125/260 (48%), Gaps = 30/260 (11%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + +++++ ++L      +DV  +     + +L+ + + P SK    
Sbjct: 216 REPLRAMLIKRLEKMGLSEELADQLACY-IPEDVPAKDAWPALLKLLAEQI-PTSK---V 270

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  +I ++G  GVGKTT I KL+ +  M     +V L   DTFR  A +QL I+  
Sbjct: 271 DTLSRGGIIALLGPTGVGKTTTIAKLAARAAMEYGPDQVALVTTDTFRIGAQEQLAIYGR 330

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++   + A++ Y      Q +   ++++DTAG    +          +R+ +
Sbjct: 331 IMGCPVRIAKDADELASVLY------QLRNRRLVLVDTAGMGQRD----------VRLTE 374

Query: 224 RLDPHAPHSVLQ-----VLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +LD    +S  Q     V+ AT  +  L++ ++ F  +   +G I++K+D +   G LI 
Sbjct: 375 QLDTIMENSGSQINSYLVMPATAQRRVLQETIDHFKRIP-LSGCILSKIDESLSLGELIS 433

Query: 278 IVVTHKIPVYFLGVGEGIND 297
           + + + +P+ ++  G+ + +
Sbjct: 434 VTIENGLPISYIANGQRVPE 453


>gi|188991597|ref|YP_001903607.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733357|emb|CAP51558.1| flhF Signal recognition 54 kDa protein (SRP54) [Xanthomonas
           campestris pv. campestris]
          Length = 590

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 25/192 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADR-----T 165
           VI +VG  G GKTT I KL+++ +   A   V L   DT R    +QL  +  +      
Sbjct: 383 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH 442

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
            AD   S +        Y+           +++IDTAG    +  L A +   +R  +++
Sbjct: 443 EADSAESLLELLERLRDYK-----------LVLIDTAGMGQRDRALAAQLN-WLRAARQV 490

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                 + L VL A    + L +V    A A   G+++TK+D T R G  + +VV H++P
Sbjct: 491 ------TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMP 544

Query: 286 VYFLGVGEGIND 297
           + ++  G+ + D
Sbjct: 545 ITWVTDGQRVPD 556


>gi|167034907|ref|YP_001670138.1| flagellar biosynthesis regulator FlhF [Pseudomonas putida GB-1]
 gi|166861395|gb|ABY99802.1| GTP-binding signal recognition particle SRP54 G- domain
           [Pseudomonas putida GB-1]
          Length = 435

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G   AA A E   + +     V++IDTAG   ++  L   +    G+ I     L 
Sbjct: 278 YVDPGQSLAA-ALEPLLRKR-----VVLIDTAGLQASDPALRMQLETLAGRGIAAKNYL- 330

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 331 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPV 381

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 382 AYLTDGPRIPD 392


>gi|116328493|ref|YP_798213.1| flagellar biosynthesis regulator FlhF [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121237|gb|ABJ79280.1| Endoflagellar biosynthesis protein, GTP-binding [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 433

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 35/200 (17%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           V+ +VG  G GKTT I KL+ K     G  V L   D +R AAI+QLK +AD     F  
Sbjct: 225 VVFLVGPTGSGKTTSIAKLAAKYFLHMGRSVSLYTTDNYRIAAIEQLKRYADTMGMPFY- 283

Query: 172 SEIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                       + FK+  A+   ++++IDTAG  H N          +  L+R+  H+ 
Sbjct: 284 -------PVKDIKKFKETLARDGSELILIDTAGYSHRN----------LEQLERM--HSF 324

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVA---------GTTGLIMTKMDGTARGGGLIPIVVT 281
           HS     D+      L  +  +H                +++TK+D     G  + +  T
Sbjct: 325 HSCFGERDSVENLLVLSAISSYHHTNTVLKAYESLNYRRILLTKLDEADFLGSFLELADT 384

Query: 282 HKIPVYFLGVGEGINDLEPF 301
           +     +  VG+ +    PF
Sbjct: 385 YSKSFTYFSVGQEV----PF 400


>gi|269836604|ref|YP_003318832.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Sphaerobacter thermophilus DSM 20745]
 gi|269785867|gb|ACZ38010.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Sphaerobacter thermophilus DSM 20745]
          Length = 358

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 15/191 (7%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           H   V  +VG +GVGKTT I KL+   S   G +V L   DT+R   I QLK +A+    
Sbjct: 152 HERVVAALVGPSGVGKTTTIAKLAAIFSATRGRRVALVTTDTYRVGGIAQLKTFAEILQL 211

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL-D 226
            F       D   L +   + A+A   D++++DT G    ++        M+R ++ L  
Sbjct: 212 PFYTVYTRED---LDHALEETAEA---DLVLVDTPGCNPYDA-------AMLREMRNLIG 258

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            + P +    L  T   + L       A+    GLI TK+D T R   +I +V   ++P+
Sbjct: 259 SNTPVTCYLTLAMTGDFDELIAASQRFALLNPAGLIATKLDETRRAPAVIGLVEQTRLPL 318

Query: 287 YFLGVGEGIND 297
            +   G  + D
Sbjct: 319 TYTCAGPLVPD 329


>gi|118475040|ref|YP_892642.1| flagellar biosynthesis regulator FlhF [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261885660|ref|ZP_06009699.1| flagellar biosynthesis regulator FlhF [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118414266|gb|ABK82686.1| flagellar biosynthesis protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 435

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 26/243 (10%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           A+ Q  ++ +         +V+R  Y    L+  ML   S+      S +  +++ VG  
Sbjct: 185 AIMQTTIQNMPASMKNNPSAVKRYFY---SLLRNMLPCRSESLE---SKKQRIMMFVGPT 238

Query: 121 GVGKTTVIGKLSKKMSDAG---LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVGKTT + KL+ K + +G    K  +   DT+R  A++QL  +A   S   +       
Sbjct: 239 GVGKTTTLSKLAYKFAHSGDIRYKTGIITLDTYRLGAVEQLFQYAKIMSIPIL------- 291

Query: 178 AAALAYEAFKQA--QAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             A+  E FK A       D+++IDT G   ++   L+   G +     ++D      V 
Sbjct: 292 -DAIELEDFKSALKSLASCDLILIDTMGSSQYDKDKLIKLNGFLKGCGTKID------VN 344

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VL A +    L ++    +      LI+TK D T   G +  +V     PV F   G+ 
Sbjct: 345 LVLSAGSKIEDLIEIYNNFSFLDIDTLIITKFDETKIFGNVFSLVYDTNTPVSFFSTGQN 404

Query: 295 IND 297
           + D
Sbjct: 405 VPD 407


>gi|304316888|ref|YP_003852033.1| flagellar biosynthetic protein FlhF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778390|gb|ADL68949.1| flagellar biosynthetic protein FlhF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 337

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 13/185 (7%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           ++ +G  GVGKTT I K++  +     K V+L   D FR A  +QLKI+ +         
Sbjct: 147 VVFIGPTGVGKTTTIAKIASHLILREKKNVLLITADIFRIAGAEQLKIYGEILGVPVKVV 206

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               D   L      +++    D+++IDTAGR H +S       KM  +   L   +   
Sbjct: 207 NNIFDLNRL------ESEISNYDIVLIDTAGRSHTDS------RKMQELKTFLQYGSYDD 254

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +   L ATT  +  +++   +       L+ TK+D T     ++  +   K P+ ++  G
Sbjct: 255 IYLCLSATTKNSDAKKIIKSYDFINDYNLLFTKLDETDNYSVILNSIYYSKKPISYVTTG 314

Query: 293 EGIND 297
           + + D
Sbjct: 315 QIVPD 319


>gi|332981454|ref|YP_004462895.1| flagellar biosynthetic protein FlhF [Mahella australiensis 50-1
           BON]
 gi|332699132|gb|AEE96073.1| flagellar biosynthetic protein FlhF [Mahella australiensis 50-1
           BON]
          Length = 353

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 115/248 (46%), Gaps = 20/248 (8%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           D+L   D+   +A +I+++ +      D+  Q+ + DV +      +P+S       + R
Sbjct: 108 DILSAHDVNPDIASEIMDKAMAIYKGGDM--QQCVEDVIKEYLGQPVPISLD-----NGR 160

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
             VI+ +G  GVGKTT + KL+       G KV L   DT+R AA++QL+ ++D      
Sbjct: 161 QSVIIFLGPTGVGKTTTLAKLAAYYGIQLGKKVALITADTYRIAAVEQLRTYSDIMQLPL 220

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
               +   +  L  E  + + A   D+++IDT GR  N+   + GI  +  ++K      
Sbjct: 221 ---SVVYSSNELKQEIGRYSDA---DIIMIDTPGRSPND---IDGINDIKDLIK---ASE 268

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  V  ++ A+    A +++           L+ TK+D T   G ++ +    + P+ ++
Sbjct: 269 PTDVFLLVSASFNYAACQRLWQRFGDIEDIRLLFTKLDETDCWGTILNMRHISRRPLSYI 328

Query: 290 GVGEGIND 297
             G+ + D
Sbjct: 329 TDGQVVPD 336


>gi|224373371|ref|YP_002607743.1| flagellar biosynthesis regulator FlhF [Nautilia profundicola AmH]
 gi|223588735|gb|ACM92471.1| flagellar biosynthesis protein flhf flagella associated
           gtp-bindingprotein [Nautilia profundicola AmH]
          Length = 416

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 19/194 (9%)

Query: 111 PH--VILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           PH  +++ VG  GVGKTT I KL+ + +       KV +   DT+R  A++QL  +A   
Sbjct: 215 PHKKIMMFVGPTGVGKTTTIAKLAARYAYKLSQRHKVGIITLDTYRIGAVEQLMTYAKMM 274

Query: 166 SADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                     SD        F+ A    +  D ++IDT G   ++      I K+   LK
Sbjct: 275 RLPIETVVDPSD--------FEDALNSLRHNDYILIDTVGSSQHDK---EKIEKLKSFLK 323

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            +D  A  ++  VL A T    L  +    ++      + TK+D T   G +  +++  K
Sbjct: 324 -VDTFAEININLVLSAVTKYEDLVDIYKNFSILPIDTFVFTKLDETKTYGNIFSLLLDTK 382

Query: 284 IPVYFLGVGEGIND 297
            PV +  +G+ + D
Sbjct: 383 KPVSYFSIGQEVPD 396


>gi|327398762|ref|YP_004339631.1| flagellar biosynthetic protein FlhF [Hippea maritima DSM 10411]
 gi|327181391|gb|AEA33572.1| flagellar biosynthetic protein FlhF [Hippea maritima DSM 10411]
          Length = 398

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 21/189 (11%)

Query: 114 ILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           I+++G  GVGKTT + KL+   K   D   KV +   DT+R  A+DQL  +A       +
Sbjct: 204 IVLLGPTGVGKTTTLAKLAAIYKLKQDK--KVGIITTDTYRIGAVDQLLNYAKIMDIPAI 261

Query: 171 CSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            S        +  E FK A  + K ++V+++DT GR   +   +  + ++  + K  D  
Sbjct: 262 VS--------ITKEDFKNALEELKDMNVVLVDTVGRSPQD---IKRLNELFGIFKNED-- 308

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             H  L V+   T +     +     +     LI TK+D T   G ++ +VV  K PV +
Sbjct: 309 RLHLSL-VMAVNTKEEDCLNIHKRFGILPIDDLIFTKVDETKTPGSMLNLVVKLKKPVSY 367

Query: 289 LGVGEGIND 297
           +  G+ + D
Sbjct: 368 VSFGQDVPD 376


>gi|254522702|ref|ZP_05134757.1| flagellar biosynthetic protein FlhF [Stenotrophomonas sp. SKA14]
 gi|219720293|gb|EED38818.1| flagellar biosynthetic protein FlhF [Stenotrophomonas sp. SKA14]
          Length = 540

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+ + ++  A   V L   DT R  A +QL  +  +      
Sbjct: 333 VIALVGPTGAGKTTTIAKLASRFAEKHAPRDVALVTTDTTRIGAREQLYGYGRQLGIAVH 392

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +  G+D   L        + K   +++IDTAG    +  L A + + +R  +++     
Sbjct: 393 EANSGTDLDQLLE------RLKDYKLVLIDTAGLGPRDRALAAQL-QWLRAARQV----- 440

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VL A T    + +V      A   GL+++K+D T R G  + + V H +P+ ++ 
Sbjct: 441 -RTLLVLPANTSFGDMDEVVRRFGAANLQGLVLSKLDETGRFGNALSVAVDHALPITWVT 499

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 500 DGQDVPE 506


>gi|167564490|ref|ZP_02357406.1| flagellar biosynthesis regulator FlhF [Burkholderia oklahomensis
           EO147]
          Length = 389

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 154 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 213

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D           A+ +   +++IDT G    + +    +   I +L   D   P
Sbjct: 214 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRM----VSDQIAMLHGAD--TP 261

Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  V+ 
Sbjct: 262 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPEAALPDLAGCILTKLDEASNLGGVLDTVIR 321

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 322 YKLPVHYVSTGQKVPE 337


>gi|307720634|ref|YP_003891774.1| flagellar biosynthetic protein FlhF [Sulfurimonas autotrophica DSM
           16294]
 gi|306978727|gb|ADN08762.1| flagellar biosynthetic protein FlhF [Sulfurimonas autotrophica DSM
           16294]
          Length = 426

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 15/205 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           VI++VG  GVGKTT I KL+ + S   +   KV L   DT+R  A++QL  +A R     
Sbjct: 225 VIMLVGPTGVGKTTSIAKLAARYSFLMEKKYKVGLVVLDTYRIGAVEQLMQYA-RMMKLG 283

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           + + +     + A E+ K       D ++IDT G    + +    I K+   L   +   
Sbjct: 284 IETVVDPPEFSNALESLKYC-----DYILIDTMGSSPYDRV---KIEKIYECLNANNTEY 335

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              V+ V+ ++     L+      +  G   L+ TK+D T   G +  +    K P+ + 
Sbjct: 336 NVDVVLVMPSSIKYEDLKVTYDNFSTLGVDTLMFTKLDETMGFGNIFSLAYETKKPISYF 395

Query: 290 GVGEGINDLEPFVAKDFSAVITGCL 314
            VG+ + +     + DF   +  CL
Sbjct: 396 SVGQEVPEDLVCASSDF---LIECL 417


>gi|21231356|ref|NP_637273.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768591|ref|YP_243353.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113017|gb|AAM41197.1| flagellar biosynthetic protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573923|gb|AAY49333.1| flagellar biosynthetic protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 555

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 25/192 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADR-----T 165
           VI +VG  G GKTT I KL+++ +   A   V L   DT R    +QL  +  +      
Sbjct: 348 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH 407

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
            AD   S +        Y+           +++IDTAG    +  L A +   +R  +++
Sbjct: 408 EADSAESLLELLERLRDYK-----------LVLIDTAGMGQRDRALAAQLN-WLRAARQV 455

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                 + L VL A    + L +V    A A   G+++TK+D T R G  + +VV H++P
Sbjct: 456 ------TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMP 509

Query: 286 VYFLGVGEGIND 297
           + ++  G+ + D
Sbjct: 510 ITWVTDGQRVPD 521


>gi|315638328|ref|ZP_07893508.1| flagellar biosynthesis (GTP-binding) protein FlhF [Campylobacter
           upsaliensis JV21]
 gi|315481595|gb|EFU72219.1| flagellar biosynthesis (GTP-binding) protein FlhF [Campylobacter
           upsaliensis JV21]
          Length = 453

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 13/187 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           ++++VG  GVGKTT + KL+ + +  D   K  +   DT+R  A++QL  +A       +
Sbjct: 254 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII 313

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S    D      EA K   +   +V+++DT G    +   +A   + +     +  +A 
Sbjct: 314 DSIEPKDLD----EAIKSLSS--CEVILVDTIGNSQYDQTKLAKTKEFL-----MHSNAE 362

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V  V+ A T    L ++    +      LI+TK D T   G +  ++    +P+ F  
Sbjct: 363 IDVNLVISANTKYEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYEINVPLSFFS 422

Query: 291 VGEGIND 297
           VG+ + D
Sbjct: 423 VGQEVPD 429


>gi|313497814|gb|ADR59180.1| FlhF [Pseudomonas putida BIRD-1]
          Length = 435

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G   AA A E   + +     V++IDTAG   ++  L   +    G+ I     L 
Sbjct: 278 YVDPGQSLAA-ALEPLLRKR-----VVLIDTAGLQASDPALRMQLETLAGRGIAAKNYL- 330

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 331 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPV 381

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 382 AYLTDGPRIPD 392


>gi|26991033|ref|NP_746458.1| flagellar biosynthesis regulator FlhF [Pseudomonas putida KT2440]
 gi|24986064|gb|AAN69922.1|AE016631_1 flagellar biosynthetic protein FlhF [Pseudomonas putida KT2440]
          Length = 435

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G   AA A E   + +     V++IDTAG   ++  L   +    G+ I     L 
Sbjct: 278 YVDPGQSLAA-ALEPLLRKR-----VVLIDTAGLQASDPALRMQLETLAGRGIAAKNYL- 330

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 331 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPV 381

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 382 AYLTDGPRIPD 392


>gi|148546763|ref|YP_001266865.1| flagellar biosynthesis regulator FlhF [Pseudomonas putida F1]
 gi|148510821|gb|ABQ77681.1| GTP-binding signal recognition particle SRP54, G- domain
           [Pseudomonas putida F1]
          Length = 435

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G   AA A E   + +     V++IDTAG   ++  L   +    G+ I     L 
Sbjct: 278 YVDPGQSLAA-ALEPLLRKR-----VVLIDTAGLQASDPALRMQLETLAGRGIAAKNYL- 330

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 331 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPV 381

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 382 AYLTDGPRIPD 392


>gi|194365641|ref|YP_002028251.1| flagellar biosynthesis regulator FlhF [Stenotrophomonas maltophilia
           R551-3]
 gi|194348445|gb|ACF51568.1| GTP-binding signal recognition particle SRP54 G- domain
           [Stenotrophomonas maltophilia R551-3]
          Length = 542

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+ + ++  A   V L   DT R  A +QL  +  +      
Sbjct: 335 VIALVGPTGAGKTTTIAKLASRFAEKHAPRDVALVTTDTTRIGAREQLYGYGRQLGIAVH 394

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +  G+D   L        + K   +++IDTAG    +  L A + + +R  +++     
Sbjct: 395 EANSGTDLDQLLE------RLKDYKLVLIDTAGLGPRDRALAAQL-QWLRAARQV----- 442

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VL A T    + +V      A   GL+++K+D T R G  + + V H +P+ ++ 
Sbjct: 443 -RTLLVLPANTSFGDMDEVVRRFGAANLQGLVLSKLDETGRFGNALSVAVDHALPITWVT 501

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 502 DGQDVPE 508


>gi|78221648|ref|YP_383395.1| GTP-binding signal recognition particle [Geobacter metallireducens
           GS-15]
 gi|78192903|gb|ABB30670.1| GTP-binding signal recognition particle SRP54, G-domain [Geobacter
           metallireducens GS-15]
          Length = 452

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 14/191 (7%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P ++ +VG  GVGKTT I KL+   +     +  L   D FR  A++QLK ++       
Sbjct: 257 PRIVALVGPTGVGKTTTIAKLAAHYALRENHRAALITIDNFRVGAVEQLKTYSRIMG--- 313

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V  E+ S  A L  EA  +  + K ++++IDTAGR H ++  +  +   +     ++ H 
Sbjct: 314 VPVEVASTPAEL--EAAIELHSDK-ELILIDTAGRSHKDNEKIEELKGFLESRFAIEIHL 370

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                  L ATT    + +V     V   + +I TK+D +   G ++   +  K P+ + 
Sbjct: 371 ------CLAATTRDREILEVVERFGVLPISRVIFTKLDESESYGTIVNAHLRTKFPLSYF 424

Query: 290 GVGEGI-NDLE 299
             G+ +  DLE
Sbjct: 425 TTGQRVPEDLE 435


>gi|167896337|ref|ZP_02483739.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           7894]
          Length = 360

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 23/199 (11%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+      
Sbjct: 122 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 181

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                + G D           A+ +   +++IDT G    +      +   I +L   D 
Sbjct: 182 PVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD- 230

Query: 228 HAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPI 278
             P   L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  
Sbjct: 231 -TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDT 289

Query: 279 VVTHKIPVYFLGVGEGIND 297
           V+ +K+PV+++  G+ + +
Sbjct: 290 VIRYKLPVHYVSTGQKVPE 308


>gi|167571640|ref|ZP_02364514.1| flagellar biosynthesis regulator FlhF [Burkholderia oklahomensis
           C6786]
          Length = 383

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 23/200 (11%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 144 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 203

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 + G D           A+ +   +++IDT G    + +    +   I +L   D
Sbjct: 204 VPVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRM----VSDQIAMLYGAD 253

Query: 227 PHAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIP 277
              P   L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++ 
Sbjct: 254 --TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPEAALPDLAGCILTKLDEASNLGGVLD 311

Query: 278 IVVTHKIPVYFLGVGEGIND 297
            V+ +K+PV+++  G+ + +
Sbjct: 312 TVIRYKLPVHYVSTGQKVPE 331


>gi|167904711|ref|ZP_02491916.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           NCTC 13177]
          Length = 391

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 156 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 215

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D           A+ +   +++IDT G    +      +   I +L   D   P
Sbjct: 216 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 263

Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  V+ 
Sbjct: 264 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 323

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 324 YKLPVHYVSTGQKVPE 339


>gi|58426836|gb|AAW75873.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 610

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+++ +       V L   DT R    +QL  +  +      
Sbjct: 403 VIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQ----LG 458

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +   +D+A    + F++ +  K+  ++IDTAG    +  L A +   +R  +++     
Sbjct: 459 VAVHEADSAESLLDLFERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 510

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            + L VL A    + L +V    A A   G+++TK+D T R G  + +VV H++P+ ++ 
Sbjct: 511 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 569

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 570 DGQRVPD 576


>gi|167826239|ref|ZP_02457710.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei 9]
          Length = 369

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 23/199 (11%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+      
Sbjct: 131 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 190

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                + G D           A+ +   +++IDT G    +      +   I +L   D 
Sbjct: 191 PVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD- 239

Query: 228 HAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPI 278
             P   L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  
Sbjct: 240 -TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDT 298

Query: 279 VVTHKIPVYFLGVGEGIND 297
           V+ +K+PV+++  G+ + +
Sbjct: 299 VIRYKLPVHYVSTGQKVPE 317


>gi|167817861|ref|ZP_02449541.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           91]
          Length = 384

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 23/200 (11%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 145 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 204

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 + G D           A+ +   +++IDT G    +      +   I +L   D
Sbjct: 205 VPVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD 254

Query: 227 PHAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIP 277
              P   L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++ 
Sbjct: 255 --TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLD 312

Query: 278 IVVTHKIPVYFLGVGEGIND 297
            V+ +K+PV+++  G+ + +
Sbjct: 313 TVIRYKLPVHYVSTGQKVPE 332


>gi|167912989|ref|ZP_02500080.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           112]
          Length = 386

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 23/200 (11%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 147 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 206

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 + G D           A+ +   +++IDT G    +      +   I +L   D
Sbjct: 207 VPVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD 256

Query: 227 PHAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIP 277
              P   L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++ 
Sbjct: 257 --TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLD 314

Query: 278 IVVTHKIPVYFLGVGEGIND 297
            V+ +K+PV+++  G+ + +
Sbjct: 315 TVIRYKLPVHYVSTGQKVPE 334


>gi|206558547|ref|YP_002229307.1| flagellar biosynthesis regulator FlhF [Burkholderia cenocepacia
           J2315]
 gi|198034584|emb|CAR50450.1| putative flagellar biosynthesis protein [Burkholderia cenocepacia
           J2315]
          Length = 599

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 18/191 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+        V
Sbjct: 369 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 425

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  LA      ++ +   +++IDT G    +      +   I +L     +AP
Sbjct: 426 PVHAVKDAGDLA---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLH--GANAP 476

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              L +L+AT+  + L +V   +  AG      G I+TK+D     GG++  V+ +K+PV
Sbjct: 477 VQRLLLLNATSHGDTLNEVVQAYRSAGEHPDLAGCILTKLDEATHLGGVLDTVIRYKLPV 536

Query: 287 YFLGVGEGIND 297
           +++  G+ + +
Sbjct: 537 HYVSTGQKVPE 547


>gi|167740653|ref|ZP_02413427.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           14]
 gi|167847747|ref|ZP_02473255.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           B7210]
          Length = 367

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 23/199 (11%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+      
Sbjct: 129 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 188

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                + G D           A+ +   +++IDT G    +      +   I +L   D 
Sbjct: 189 PVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD- 237

Query: 228 HAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPI 278
             P   L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  
Sbjct: 238 -TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDT 296

Query: 279 VVTHKIPVYFLGVGEGIND 297
           V+ +K+PV+++  G+ + +
Sbjct: 297 VIRYKLPVHYVSTGQKVPE 315


>gi|325917847|ref|ZP_08180025.1| flagellar GTP-binding protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325535931|gb|EGD07749.1| flagellar GTP-binding protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 331

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+++ +   A   V L   DT R    +QL  +  +      
Sbjct: 124 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTLRVGGREQLHSYGRQLG--IA 181

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E  +D+A    E   + +  K+  ++IDTAG    +  L A +   +R  +++     
Sbjct: 182 VHE--ADSAESLLELLDRLRDYKL--VLIDTAGMGQRDRALAAQL-NWLRAAQQV----- 231

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            + L VL A +    L +V    A A   G+++TK+D T R G  + +VV H++P+ ++ 
Sbjct: 232 -TSLLVLPANSHFADLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQLPITWVT 290

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 291 DGQRVPD 297


>gi|228984856|ref|ZP_04145026.1| hypothetical protein bthur0001_15580 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774806|gb|EEM23202.1| hypothetical protein bthur0001_15580 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 436

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 105/241 (43%), Gaps = 18/241 (7%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC--SEI 174
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +    E+
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEV 306

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
                AL Y  FK  +  +VD ++IDTAG+ +  S     + +MI  + +++P   +  L
Sbjct: 307 AM-TRALTY--FK--EEARVDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYICL 356

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+ 
Sbjct: 357 TLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQD 415

Query: 295 I 295
           +
Sbjct: 416 V 416


>gi|167721671|ref|ZP_02404907.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           DM98]
          Length = 367

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 23/199 (11%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+      
Sbjct: 129 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 188

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                + G D           A+ +   +++IDT G    +      +   I +L   D 
Sbjct: 189 PVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD- 237

Query: 228 HAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPI 278
             P   L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  
Sbjct: 238 -TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDT 296

Query: 279 VVTHKIPVYFLGVGEGIND 297
           V+ +K+PV+++  G+ + +
Sbjct: 297 VIRYKLPVHYVSTGQKVPE 315


>gi|229029451|ref|ZP_04185534.1| hypothetical protein bcere0028_15420 [Bacillus cereus AH1271]
 gi|228731910|gb|EEL82809.1| hypothetical protein bcere0028_15420 [Bacillus cereus AH1271]
          Length = 436

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 20/242 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILV 116
           + Q  VE+     YA+ + V+     +    E+I  +L  +   FN +  F      I +
Sbjct: 187 LEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIGYILEDMRSHFNTENVFEKEVQTIAL 246

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT + K++ +       V     D  R   + QL+ +      + +   +  
Sbjct: 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTMGFEVIA--VRD 304

Query: 177 DAA---ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +AA   AL Y  FK+     VD ++IDTAG+ +  S     + +MI  + +++P   +  
Sbjct: 305 EAAMTRALTY--FKEEAC--VDYILIDTAGKNYRAS---ETVEEMIETMGQVEP--DYIC 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L +  +   ++ +  +  F  +    G++ TK D TA  G L+ I      P+  +  G+
Sbjct: 356 LTLSASMKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414

Query: 294 GI 295
            +
Sbjct: 415 DV 416


>gi|170731606|ref|YP_001763553.1| flagellar biosynthesis regulator FlhF [Burkholderia cenocepacia
           MC0-3]
 gi|169814848|gb|ACA89431.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia cenocepacia MC0-3]
          Length = 582

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 18/191 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+        V
Sbjct: 352 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 408

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  LA      ++ +   +++IDT G    +      +   I +L   +  AP
Sbjct: 409 PVHAVKDAGDLA---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLHGAN--AP 459

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              L +L+AT+  + L +V   +  AG      G I+TK+D     GG++  V+ +K+PV
Sbjct: 460 VQRLLLLNATSHGDTLNEVVQAYRSAGDHPDLAGCILTKLDEATHLGGVLDTVIRYKLPV 519

Query: 287 YFLGVGEGIND 297
           +++  G+ + +
Sbjct: 520 HYVSTGQKVPE 530


>gi|70943367|ref|XP_741738.1| signal recognition particle 54 kDa protein [Plasmodium chabaudi
           chabaudi]
 gi|56520308|emb|CAH81656.1| signal recognition particle 54 kDa protein, putative [Plasmodium
           chabaudi chabaudi]
          Length = 279

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 41/78 (52%)

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+   Q   F        +I+TK+DG A+GGG +  V     P+ F+G GE +ND
Sbjct: 1   DSHIGQSCHDQAMAFKNSVKVGSIIITKIDGHAKGGGALSAVSAIGCPITFIGTGEHVND 60

Query: 298 LEPFVAKDFSAVITGCLD 315
            E F AK F + + G  D
Sbjct: 61  FEKFEAKSFVSRLLGLGD 78


>gi|53724310|ref|YP_104356.1| flagellar biosynthesis regulator FlhF [Burkholderia mallei ATCC
           23344]
 gi|67639809|ref|ZP_00438642.1| flagellar biosynthesis protein FlhF [Burkholderia mallei GB8 horse
           4]
 gi|121598247|ref|YP_994699.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei
           SAVP1]
 gi|124385699|ref|YP_001027677.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei
           NCTC 10229]
 gi|167002949|ref|ZP_02268739.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei
           PRL-20]
 gi|52427733|gb|AAU48326.1| flagellar biosynthetic protein FlhF, putative [Burkholderia mallei
           ATCC 23344]
 gi|121227057|gb|ABM49575.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei
           SAVP1]
 gi|238520419|gb|EEP83879.1| flagellar biosynthesis protein FlhF [Burkholderia mallei GB8 horse
           4]
 gi|243061440|gb|EES43626.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei
           PRL-20]
          Length = 374

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 23/199 (11%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+      
Sbjct: 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 195

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                + G D           A+ +   +++IDT G    +      +   I +L   D 
Sbjct: 196 PVHAVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD- 244

Query: 228 HAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPI 278
             P   L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  
Sbjct: 245 -TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDT 303

Query: 279 VVTHKIPVYFLGVGEGIND 297
           V+ +K+PV+++  G+ + +
Sbjct: 304 VIRYKLPVHYVSTGQKVPE 322


>gi|218778855|ref|YP_002430173.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760239|gb|ACL02705.1| Flagellar biosynthesis regulator FlhF (GTP-binding signal
           recognition particle SRP54 G- domain protein)
           [Desulfatibacillum alkenivorans AK-01]
          Length = 393

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 37/226 (16%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRP-------HVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           D + L   ++  + K FN+    RP        V   VG  GVGKTT I KL+  +    
Sbjct: 152 DPARLFKAVMNLVLKGFNF---SRPCEIKAGQAVCAFVGPTGVGKTTTIAKLAADLHLTR 208

Query: 140 LK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV---- 194
            K V L + D +R  A +QLK +A             S       +AF Q   +      
Sbjct: 209 KKNVGLLSIDNYRIGAAEQLKTYA-------------SILGLPCLQAFNQKDLQYALGRL 255

Query: 195 ---DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV++IDTAG+   ++  M  +  +    +R+D H       VL A T ++ + +   
Sbjct: 256 ADKDVVLIDTAGQSQYDTQRMREMEALFDGERRIDIHL------VLSAVTCESEMEETAK 309

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                  +  + TK D T + G ++  V+   +PV F+  G+ + +
Sbjct: 310 RFGGLDFSSYVFTKTDETKKRGAIVNQVLKRPMPVSFISTGQRVPE 355


>gi|167582697|ref|ZP_02375571.1| flagellar biosynthesis regulator FlhF [Burkholderia thailandensis
           TXDOH]
          Length = 506

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 271 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 330

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D           A+ +   +++IDT G    +      +   I +L   D   P
Sbjct: 331 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 378

Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  V+ 
Sbjct: 379 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPRSALPDLAGCILTKLDEASNLGGVLDTVIR 438

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 439 YKLPVHYVSTGQKVPE 454


>gi|122879200|ref|YP_201258.6| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 552

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+++ +       V L   DT R    +QL  +  +      
Sbjct: 345 VIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQLG--VA 402

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E  +D+A    + F++ +  K+  ++IDTAG    +  L A +   +R  +++     
Sbjct: 403 VHE--ADSAESLLDLFERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 452

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            + L VL A    + L +V    A A   G+++TK+D T R G  + +VV H++P+ ++ 
Sbjct: 453 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 511

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 512 DGQRVPD 518


>gi|255322023|ref|ZP_05363173.1| glutamine synthetase 1 [Campylobacter showae RM3277]
 gi|255301127|gb|EET80394.1| glutamine synthetase 1 [Campylobacter showae RM3277]
          Length = 488

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 112/256 (43%), Gaps = 34/256 (13%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           VE +  +  A   +V+R     S L+ KML   S+    +   +  ++++VG  GVGKTT
Sbjct: 249 VENMSPQMKANPTAVRRYF---SSLLRKMLPCRSE----EDDRKQKIMMLVGPTGVGKTT 301

Query: 127 VIGKLSKKMSDAG---LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
            + KL+ + +       K  +   DT+R  A++QL  +A       +          +  
Sbjct: 302 TLAKLAARFAYGDGKRAKTGIITLDTYRIGAVEQLFQYAKMMKLPIL--------DVIEV 353

Query: 184 EAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-HSVLQVLDAT 240
           + FK A  Q    +V++IDT G    +      + ++ + LK  D H   H VL     +
Sbjct: 354 DDFKNALKQLNHCEVILIDTTGSSQYDK---EKLSRLEKFLKSSDTHIDVHLVL-----S 405

Query: 241 TGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            G      +E+++  +      LI+TK D T   G +  +V     PV F  VG+ + D 
Sbjct: 406 AGAKIEDMLEIYNGFSFLDIDTLIITKFDETKIFGNVFSLVYETNKPVSFFSVGQEVPD- 464

Query: 299 EPFVAKDFSAVITGCL 314
           +  VAK  S  +  C+
Sbjct: 465 DILVAK--SEFLVSCV 478


>gi|229544413|ref|ZP_04433471.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Bacillus coagulans 36D1]
 gi|229324898|gb|EEN90575.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Bacillus coagulans 36D1]
          Length = 375

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 120/264 (45%), Gaps = 31/264 (11%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            +RL+ G+++ L++ L+     V +   + EE   ++   +++   +L     L+ K L 
Sbjct: 119 QKRLNTGLQQGLDESLL-----VVIGDALYEEW--EKANGNLTENEILKQAKALLQKKLA 171

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAID 156
            L+    +  S + +V L+ G  GVGKTT + K++ + + +   K+     DT+R AAI+
Sbjct: 172 HLT----YGGSQKKYVNLI-GPTGVGKTTTLAKMAAQAVLEKKEKIAFITTDTYRIAAIE 226

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSILMAG 214
           QLK +A+  +         SD        FK+A  K    D + IDTAGR +     +  
Sbjct: 227 QLKTYANLLNVPLEVVYKLSD--------FKKAIEKFSDFDRVFIDTAGRNYRELQYVRE 278

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAGTTGLIMTKMDGTARGG 273
           +  +I      D HA       L  T  +  ++ V + F ++      I TK+D T+  G
Sbjct: 279 LSGLI------DFHAEMETFLTLSLTMKEKDMKAVFDSFQSIR-IDRFIFTKLDETSTYG 331

Query: 274 GLIPIVVTHKIPVYFLGVGEGIND 297
             I ++  +     ++  G+ + D
Sbjct: 332 AAINLMEQYGKGCAYVTNGQDVPD 355


>gi|152990365|ref|YP_001356087.1| flagellar biosynthesis protein FlhF [Nitratiruptor sp. SB155-2]
 gi|151422226|dbj|BAF69730.1| flagellar biosynthesis protein FlhF [Nitratiruptor sp. SB155-2]
          Length = 391

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 115/255 (45%), Gaps = 22/255 (8%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           EL  LLI +D+   VA+ +V+E        D+   ++  + S     +   + K   +  
Sbjct: 131 ELIKLLIENDVDPKVAKMLVKE----SCGLDIDTNKLDLNTSFFKEALTTAIEKKIKFRG 186

Query: 108 SHRPH-----VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIW 161
             +       VI  VG  GVGKTT + K++ ++  +  LK+ + + DTF+  A+ Q + +
Sbjct: 187 PLKIQKGNFKVIAFVGPTGVGKTTNLFKIASELVINQKLKIAVISIDTFKVGAVQQARSF 246

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           ++  +  F      +D+  L     K  Q    +DV++IDT GR H +      +G+M  
Sbjct: 247 SNILNIPFYAI---TDSKNLK----KTLQNLNGIDVVLIDTVGRSHYD---YWRLGEMRE 296

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           +L         S++   +    + AL  V  +        L  TK+D T + G L+ + +
Sbjct: 297 ILGGGADFMDISLVLSCNYKNSE-ALEVVNRYRTFFPIHSLFFTKIDETYKPGILLNLPI 355

Query: 281 THKIPVYFLGVGEGI 295
              IP+ F+ VG+ +
Sbjct: 356 KTDIPLSFISVGQKV 370


>gi|289666122|ref|ZP_06487703.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 561

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 25/192 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADR-----T 165
           VI +VG  G GKTT I KL+++ +   A   V L   DT R    +QL  +  +      
Sbjct: 354 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH 413

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
            AD   S +        Y+           +++IDTAG    +  L A +   +R  +++
Sbjct: 414 EADSAESLLELLERLRDYK-----------LVLIDTAGMGQRDRALAAQLN-WLRAAQQV 461

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                 + L VL A    + L +V    A A   G+++TK+D T R G  + +VV H++P
Sbjct: 462 ------TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMP 515

Query: 286 VYFLGVGEGIND 297
           + ++  G+ + D
Sbjct: 516 ITWVTDGQRVPD 527


>gi|84624135|ref|YP_451507.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84368075|dbj|BAE69233.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 552

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+++ +       V L   DT R    +QL  +  +      
Sbjct: 345 VIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQLG--VA 402

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E  +D+A    + F++ +  K+  ++IDTAG    +  L A +   +R  +++     
Sbjct: 403 VHE--ADSAESLLDLFERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 452

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            + L VL A    + L +V    A A   G+++TK+D T R G  + +VV H++P+ ++ 
Sbjct: 453 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 511

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 512 DGQRVPD 518


>gi|323705426|ref|ZP_08117001.1| flagellar biosynthetic protein FlhF [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535328|gb|EGB25104.1| flagellar biosynthetic protein FlhF [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 337

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 15/183 (8%)

Query: 117 VGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +G  GVGKTT I K++  +      KV+L   D FR A  +QLKI+ +      +     
Sbjct: 150 IGPTGVGKTTTIAKIASNLILREKKKVLLITADIFRIAGAEQLKIYGEILGVPVMVVNNI 209

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH-SVL 234
            D   L      + +  K DV++IDTAGR H +S       K ++ LK    +  +  V 
Sbjct: 210 FDLNRL------EGEISKYDVVLIDTAGRSHTDS-------KKMQELKTFLQYGTYDEVY 256

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
             L A T  + ++++   +       L+ TK+D T     ++  +   K  V ++  G+ 
Sbjct: 257 LCLSAATKNSDIKKIIKSYDFIDEYNLLFTKLDETDNYSVILNSIYYSKKSVSYVTDGQM 316

Query: 295 IND 297
           + D
Sbjct: 317 VPD 319


>gi|77457788|ref|YP_347293.1| flagellar biosynthesis regulator FlhF [Pseudomonas fluorescens
           Pf0-1]
 gi|77381791|gb|ABA73304.1| putative flagellar biosynthesis protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 446

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 228 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNIALVSMDSFRIGAQEQLKTLGRILNVSVT 287

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A      K+V  ++IDTAG   ++  L   +    G+ IR    L 
Sbjct: 288 HVDPGQSLV----QALDPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIRSKNYL- 340

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 341 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 391

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 392 AYLTDGPRIPD 402


>gi|107024381|ref|YP_622708.1| flagellar biosynthesis regulator FlhF [Burkholderia cenocepacia AU
           1054]
 gi|116688293|ref|YP_833916.1| flagellar biosynthesis regulator FlhF [Burkholderia cenocepacia
           HI2424]
 gi|105894570|gb|ABF77735.1| GTP-binding signal recognition particle SRP54, G-domain protein
           [Burkholderia cenocepacia AU 1054]
 gi|116646382|gb|ABK07023.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Burkholderia cenocepacia HI2424]
          Length = 592

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 18/191 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+        V
Sbjct: 362 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 418

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  LA      ++ +   +++IDT G    +      +   I +L   +  AP
Sbjct: 419 PVHAVKDAGDLA---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLHGAN--AP 469

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              L +L+AT+  + L +V   +  AG      G I+TK+D     GG++  V+ +K+PV
Sbjct: 470 VQRLLLLNATSHGDTLNEVVQAYRSAGEHPDLAGCILTKLDEATHLGGVLDTVIRYKLPV 529

Query: 287 YFLGVGEGIND 297
           +++  G+ + +
Sbjct: 530 HYVSTGQKVPE 540


>gi|283955508|ref|ZP_06373003.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792969|gb|EFC31743.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 484

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 14/193 (7%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +  ++++VG  GVGKTT + KL+ + +  D   K  +   DT+R  A++QL  +A     
Sbjct: 281 KQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKL 340

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             + S    D      EA K       +V+++DT G   N+    + + K    L  +  
Sbjct: 341 PIIDSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLSKTKEFL--MHS 389

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
           +A   V  V+ A T    L ++    +      LI+TK D T   G +  ++    IP+ 
Sbjct: 390 NAEIDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLS 449

Query: 288 FLGVGEGI-NDLE 299
           F   G+ + +DLE
Sbjct: 450 FFSTGQEVPDDLE 462


>gi|217423827|ref|ZP_03455327.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 576]
 gi|226193076|ref|ZP_03788686.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           Pakistan 9]
 gi|217392890|gb|EEC32912.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 576]
 gi|225934676|gb|EEH30653.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           Pakistan 9]
          Length = 583

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D           A+ +   +++IDT G    +      +   I +L   D   P
Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455

Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  V+ 
Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 516 YKLPVHYVSTGQKVPE 531


>gi|190574222|ref|YP_001972067.1| flagellar biosynthesis regulator FlhF [Stenotrophomonas maltophilia
           K279a]
 gi|190012144|emb|CAQ45767.1| putative flagellar biosynthesis protein FlhF [Stenotrophomonas
           maltophilia K279a]
          Length = 540

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+ + ++  A   V L   DT R  A +QL  +  +      
Sbjct: 333 VIALVGPTGAGKTTTIAKLASRFAEKHAPRDVALVTTDTTRIGAREQLYGYGRQLGIAVH 392

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +  G+D   L        + K   +++IDTAG    +  L A + + +R  +++     
Sbjct: 393 EANSGTDLDQLLE------RLKDYKLVLIDTAGLGPRDRALAAQL-QWLRAARQV----- 440

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VL A T    + +V      A   GL+++K+D T R G  + + V H +P+ ++ 
Sbjct: 441 -RTLLVLPANTSFGDMDEVVRRFGAANLQGLVLSKLDETGRFGNALSVAVDHALPINWVT 499

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 500 DGQDVPE 506


>gi|53720903|ref|YP_109889.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           K96243]
 gi|76810293|ref|YP_331478.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           1710b]
 gi|254186352|ref|ZP_04892869.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254259130|ref|ZP_04950184.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1710a]
 gi|254298804|ref|ZP_04966255.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           406e]
 gi|52211317|emb|CAH37306.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           K96243]
 gi|76579746|gb|ABA49221.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1710b]
 gi|157808601|gb|EDO85771.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           406e]
 gi|157934037|gb|EDO89707.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254217819|gb|EET07203.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1710a]
          Length = 583

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D           A+ +   +++IDT G    +      +   I +L   D   P
Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455

Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  V+ 
Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 516 YKLPVHYVSTGQKVPE 531


>gi|78064849|ref|YP_367618.1| flagellar biosynthesis regulator FlhF [Burkholderia sp. 383]
 gi|77965594|gb|ABB06974.1| GTP-binding signal recognition particle SRP54, G-domain protein
           [Burkholderia sp. 383]
          Length = 587

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 18/191 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+        V
Sbjct: 357 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 413

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  LA      ++ +   +++IDT G    +      +   I +L     +AP
Sbjct: 414 PVHAVKDAGDLA---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLH--GANAP 464

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              L +L+AT+  + L +V   +  AG      G I+TK+D     GG++  V+ +K+P+
Sbjct: 465 VQRLLLLNATSHGDTLNEVVQAYRSAGEHPDLAGCILTKLDEATHLGGVLDTVIRYKLPI 524

Query: 287 YFLGVGEGIND 297
           +++  G+ + +
Sbjct: 525 HYVSTGQKVPE 535


>gi|126454275|ref|YP_001068143.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           1106a]
 gi|242314712|ref|ZP_04813728.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1106b]
 gi|126227917|gb|ABN91457.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1106a]
 gi|242137951|gb|EES24353.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1106b]
          Length = 583

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D           A+ +   +++IDT G    +      +   I +L   D   P
Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455

Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  V+ 
Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 516 YKLPVHYVSTGQKVPE 531


>gi|154175094|ref|YP_001408773.1| flagellar biosynthesis regulator FlhF [Campylobacter curvus 525.92]
 gi|112802244|gb|EAT99588.1| ATP-dependent DNA helicase RecG [Campylobacter curvus 525.92]
          Length = 458

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 35/247 (14%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           A+ Q  ++ L     +   +V+R  Y    L+  ML P  K  +     +  ++++VG  
Sbjct: 208 AIMQATIQNLPASMKSNPTAVKRYFY---SLLRNML-PCRKERS---DKKQRIMMLVGPT 260

Query: 121 GVGKTTVIGKLSKKM---SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVGKTT + KL+ +    ++   K  +   DT+R  A++QL  +A       +       
Sbjct: 261 GVGKTTTLAKLAARFAYGNEKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPIL------- 313

Query: 178 AAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
              +  E FK A       DV++IDT G    +             L +LD    HS  Q
Sbjct: 314 -DVIEVEEFKDAIKTLSHCDVILIDTTGNSQYDK----------EKLDKLDKFLKHSGAQ 362

Query: 236 -----VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                VL A +    L ++    +      LI+TK D T   G +  ++     PV +  
Sbjct: 363 IDVNLVLSAGSKVEDLMEIYNGFSFLDIDTLIITKFDETRIFGNVFSLIYETNTPVSYFC 422

Query: 291 VGEGIND 297
           VG+ + D
Sbjct: 423 VGQEVPD 429


>gi|254194651|ref|ZP_04901082.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei S13]
 gi|169651401|gb|EDS84094.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei S13]
          Length = 583

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D           A+ +   +++IDT G    +      +   I +L   D   P
Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455

Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  V+ 
Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 516 YKLPVHYVSTGQKVPE 531


>gi|254183874|ref|ZP_04890465.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1655]
 gi|184214406|gb|EDU11449.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1655]
          Length = 583

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D           A+ +   +++IDT G    +      +   I +L   D   P
Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455

Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  V+ 
Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 516 YKLPVHYVSTGQKVPE 531


>gi|170722832|ref|YP_001750520.1| flagellar biosynthesis regulator FlhF [Pseudomonas putida W619]
 gi|169760835|gb|ACA74151.1| GTP-binding signal recognition particle SRP54 G- domain
           [Pseudomonas putida W619]
          Length = 435

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 30/195 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG--------RLHNNSILMAGIGKMIRVL 222
             + G   A    +A +    K+V  ++IDTAG        R+   S+   GI       
Sbjct: 278 YVDPGQSLA----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLASRGI------- 324

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                 A  + L VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H
Sbjct: 325 ------ASKNYL-VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISH 377

Query: 283 KIPVYFLGVGEGIND 297
           ++PV +L  G  I D
Sbjct: 378 ELPVAYLTDGPRIPD 392


>gi|126440832|ref|YP_001060836.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           668]
 gi|126220325|gb|ABN83831.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 668]
          Length = 583

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D           A+ +   +++IDT G    +      +   I +L   D   P
Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455

Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  V+ 
Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 516 YKLPVHYVSTGQKVPE 531


>gi|237814233|ref|YP_002898684.1| flagellar biosynthetic protein FlhF [Burkholderia pseudomallei
           MSHR346]
 gi|237506716|gb|ACQ99034.1| flagellar biosynthetic protein FlhF [Burkholderia pseudomallei
           MSHR346]
          Length = 583

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D           A+ +   +++IDT G    +      +   I +L   D   P
Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455

Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  V+ 
Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 516 YKLPVHYVSTGQKVPE 531


>gi|83720875|ref|YP_443662.1| flagellar biosynthesis regulator FlhF [Burkholderia thailandensis
           E264]
 gi|167620813|ref|ZP_02389444.1| flagellar biosynthesis regulator FlhF [Burkholderia thailandensis
           Bt4]
 gi|83654700|gb|ABC38763.1| flagellar biosynthetic protein FlhF, putative [Burkholderia
           thailandensis E264]
          Length = 577

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 342 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 401

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D           A+ +   +++IDT G    +      +   I +L   D   P
Sbjct: 402 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 449

Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  V+ 
Sbjct: 450 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPRSALPDLAGCILTKLDEASNLGGVLDTVIR 509

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 510 YKLPVHYVSTGQKVPE 525


>gi|134281453|ref|ZP_01768161.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 305]
 gi|134247120|gb|EBA47206.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 305]
          Length = 583

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D           A+ +   +++IDT G    +      +   I +L   D   P
Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455

Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  V+ 
Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 516 YKLPVHYVSTGQKVPE 531


>gi|86151220|ref|ZP_01069435.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|157414378|ref|YP_001481634.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|315123669|ref|YP_004065673.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841567|gb|EAQ58814.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|157385342|gb|ABV51657.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747024|gb|ADN90294.1| Flagellar biosynthesis protein flhF [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315017391|gb|ADT65484.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 484

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 14/193 (7%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +  ++++VG  GVGKTT + KL+ + +  D   K  +   DT+R  A++QL  +A     
Sbjct: 281 KQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKL 340

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             + S    D      EA K       +V+++DT G   N+    + + K    L  +  
Sbjct: 341 PIIDSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--MHS 389

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
           +A   V  V+ A T    L ++    +      LI+TK D T   G +  ++    IP+ 
Sbjct: 390 NAEIDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLS 449

Query: 288 FLGVGEGI-NDLE 299
           F   G+ + +DLE
Sbjct: 450 FFSTGQEVPDDLE 462


>gi|78047535|ref|YP_363710.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035965|emb|CAJ23656.1| flagellar GTP-binding protein FlhF [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 566

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+++ +   A   V L   DT R    +QL  +  +      
Sbjct: 359 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG--IA 416

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E  +D+A    +  ++ +  K+  ++IDTAG    +  L A +   +R  +++     
Sbjct: 417 VHE--ADSAESLLDLLERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 466

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            + L VL A    + L +V    A A   G+++TK+D T R G  + +VV H++P+ ++ 
Sbjct: 467 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 525

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 526 DGQRVPD 532


>gi|21242679|ref|NP_642261.1| flagellar biosynthesis regulator FlhF [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108150|gb|AAM36797.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 566

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+++ +   A   V L   DT R    +QL  +  +      
Sbjct: 359 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG--IA 416

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E  +D+A    +  ++ +  K+  ++IDTAG    +  L A +   +R  +++     
Sbjct: 417 VHE--ADSAESLLDLLERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 466

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            + L VL A    + L +V    A A   G+++TK+D T R G  + +VV H++P+ ++ 
Sbjct: 467 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 525

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 526 DGQRVPD 532


>gi|167920928|ref|ZP_02508019.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           BCC215]
          Length = 583

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 348 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 407

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D           A+ +   +++IDT G    +      +   I +L   D   P
Sbjct: 408 AVKDGGDLQ------LALAELRNKHMVLIDTIGMSQRDRT----VSDQIAMLHGAD--TP 455

Query: 231 HSVLQVLDATTGQNALRQV-EMFHAVAGTT--------GLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V + + + AG          G I+TK+D  +  GG++  V+ 
Sbjct: 456 VQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 515

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 516 YKLPVHYVSTGQKVPE 531


>gi|257484898|ref|ZP_05638939.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289629015|ref|ZP_06461969.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647086|ref|ZP_06478429.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487815|ref|ZP_07005856.1| Flagellar biosynthesis protein flhF [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157907|gb|EFH98986.1| Flagellar biosynthesis protein flhF [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325132|gb|EFW81201.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329391|gb|EFW85384.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330866463|gb|EGH01172.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330986507|gb|EGH84610.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011082|gb|EGH91138.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 442

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 388 AYLTDGPRIPD 398


>gi|330889041|gb|EGH21702.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 442

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 388 AYLTDGPRIPD 398


>gi|71736999|ref|YP_275523.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557552|gb|AAZ36763.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 442

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 388 AYLTDGPRIPD 398


>gi|302185380|ref|ZP_07262053.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           syringae 642]
          Length = 442

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 388 AYLTDGPRIPD 398


>gi|238593005|ref|XP_002393074.1| hypothetical protein MPER_07266 [Moniliophthora perniciosa FA553]
 gi|215460003|gb|EEB94004.1| hypothetical protein MPER_07266 [Moniliophthora perniciosa FA553]
          Length = 324

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 37/50 (74%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           P+ I  VGVNGVGK+T + K+   +   GL+V++AA DTFRS A++QL++
Sbjct: 221 PYSITFVGVNGVGKSTNLSKVCFWLIQNGLRVLIAACDTFRSGAVEQLRV 270


>gi|226313049|ref|YP_002772943.1| flagellar biosynthesis protein FlhF [Brevibacillus brevis NBRC
           100599]
 gi|226095997|dbj|BAH44439.1| probable flagellar biosynthesis protein FlhF [Brevibacillus brevis
           NBRC 100599]
          Length = 448

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 23/186 (12%)

Query: 118 GVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD----FVCS 172
           G  GVGKTT I KL+   M     K+     DT+R AA++QLK +A+  +      F   
Sbjct: 263 GPTGVGKTTTIAKLAANSMLKEKRKIGFITADTYRMAAVEQLKTYANILNVPLEVVFSPR 322

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E+ +    L+            D++ +DTAGR   N   + GI +++        H   S
Sbjct: 323 EMAAAMERLS----------DCDLIFVDTAGRNFRNDEYVEGIRELLE-------HGKDS 365

Query: 233 V-LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
           V   VL  ++  N ++ +    A      +I TK D T   G ++ +     + + ++  
Sbjct: 366 VNYLVLSLSSKFNDMKAIVQNFAEVQVKQVIFTKADETNSFGTMLNVCQEMNLQLSYVTT 425

Query: 292 GEGIND 297
           G+ + D
Sbjct: 426 GQNVPD 431


>gi|57241946|ref|ZP_00369886.1| flagellar biosynthesis protein FlhF, putative [Campylobacter
           upsaliensis RM3195]
 gi|57017138|gb|EAL53919.1| flagellar biosynthesis protein FlhF, putative [Campylobacter
           upsaliensis RM3195]
          Length = 453

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 13/187 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           ++++VG  GVGKTT + KL+ + +  D   K  +   DT+R  A++QL  +A       +
Sbjct: 254 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII 313

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S    D      EA K   +   +V+++DT G    +   +A   + +     +  +A 
Sbjct: 314 DSIEPKDLD----EAIKSLSS--CEVILVDTIGNSQYDQTKLAKTKEFL-----MHSNAE 362

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V  V+ A T    L ++    +      LI+TK D T   G +  ++    +P+ F  
Sbjct: 363 IDVNLVISANTKYEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYEINVPLSFFS 422

Query: 291 VGEGIND 297
           +G+ + D
Sbjct: 423 MGQEVPD 429


>gi|134294345|ref|YP_001118080.1| flagellar biosynthesis regulator FlhF [Burkholderia vietnamiensis
           G4]
 gi|134137502|gb|ABO53245.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Burkholderia vietnamiensis G4]
          Length = 596

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+        V
Sbjct: 361 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 417

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  LA      ++ +   +++IDT G    +  L   I  +         +AP
Sbjct: 418 PVHAVKDAGDLA---LALSELRNKHIVLIDTIGMSQRDRALSDQIAMLHGA------NAP 468

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT---------TGLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V   +  AG           G I+TK+D     GG++  V+ 
Sbjct: 469 VQRLLLLNATSHGDTLNEVVQAYRSAGEHPHGPTPDLAGCILTKLDEATHLGGVLDTVIR 528

Query: 282 HKIPVYFLGVGEGIND 297
           +K+PV+++  G+ + +
Sbjct: 529 YKLPVHYVSTGQKVPE 544


>gi|330976013|gb|EGH76079.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 442

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 284 HIDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 388 AYLTDGPRIPD 398


>gi|283955441|ref|ZP_06372939.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793068|gb|EFC31839.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           414]
          Length = 484

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 14/190 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           ++++VG  GVGKTT + KL+ + +  D   K  +   DT+R  A++QL  +A       +
Sbjct: 284 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII 343

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S    D      EA K       +V+++DT G   N+    + + K    L  +  +A 
Sbjct: 344 DSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--MHSNAD 392

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V  V+ A T    L ++    +      LI+TK D T   G +  ++    IP+ F  
Sbjct: 393 IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLSFFS 452

Query: 291 VGEGI-NDLE 299
            G+ + +DLE
Sbjct: 453 TGQEVPDDLE 462


>gi|168008842|ref|XP_001757115.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691613|gb|EDQ77974.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 281

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A  Q + F        +I+TKMDG A+GGG +  V   K P+ F+G GE +++ E F  K
Sbjct: 12  AFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPIIFIGTGEHMDEFEAFETK 71

Query: 305 DFSAVITGCLDY 316
            F + + G  D+
Sbjct: 72  TFVSRLLGMGDW 83


>gi|297569690|ref|YP_003691034.1| flagellar biosynthetic protein FlhF [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925605|gb|ADH86415.1| flagellar biosynthetic protein FlhF [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 391

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 17/200 (8%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLK 159
           +P   +    P VI +VG  GVGKTT   K++   S     +V L + D +R  A DQL+
Sbjct: 170 RPLQLNGRTEPLVIALVGPTGVGKTTTAAKIAAWFSLHENARVALLSMDCYRIGATDQLR 229

Query: 160 IWAD--RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +A   R   + V       AA   +        ++ D++IIDTAG+   +   +  +G+
Sbjct: 230 TYARIMRLPCEIVLRRQDLQAALHKH--------RQKDLIIIDTAGKSPFDEDHIPELGQ 281

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
                  + P+       VL AT  +  +  +   +   G    I+TK+D T     L  
Sbjct: 282 WFADHGGITPYL------VLSATAKKEDINHIIATYRPLGVPAAILTKLDETRAYAALCQ 335

Query: 278 IVVTHKIPVYFLGVGEGIND 297
            +   ++P+  L  G+ + +
Sbjct: 336 QMARAELPIACLCTGQKVPE 355


>gi|166712014|ref|ZP_02243221.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 557

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+++ +   A   V L   DT R    +QL  +  +      
Sbjct: 350 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG--IA 407

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E  +D+A    +  ++ +  K+  ++IDTAG    +  L A +   +R  +++     
Sbjct: 408 VHE--ADSAESLLDLLERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 457

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            + L VL A    + L +V    A A   G+++TK+D T R G  + +VV H++P+ ++ 
Sbjct: 458 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 516

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 517 DGQRVPD 523


>gi|330955366|gb|EGH55626.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae Cit 7]
          Length = 269

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 51  VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 110

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 111 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 163

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 164 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 214

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 215 AYLTDGPRIPD 225


>gi|330815161|ref|YP_004358866.1| FlhF [Burkholderia gladioli BSR3]
 gi|327367554|gb|AEA58910.1| FlhF [Burkholderia gladioli BSR3]
          Length = 594

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 17/190 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 365 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGRILGVPVH 424

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D   LA    +        +++IDT G    +      +   I +L+  D   P
Sbjct: 425 AVKDGGDLQ-LALSELRNKH-----IVLIDTIGMSQRDRT----VSDQIAMLQGAD--TP 472

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT---TGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
              L +L+AT+  + L +V   +  AG     G I+TK+D     GG++  V+ +++PV+
Sbjct: 473 VQRLLLLNATSHGDTLNEVVQAYRGAGQPDLAGCILTKLDEATNLGGVLDTVIRYQLPVH 532

Query: 288 FLGVGEGIND 297
           ++  G+ + +
Sbjct: 533 YVSTGQKVPE 542


>gi|330808233|ref|YP_004352695.1| flagellar biosynthesis regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376341|gb|AEA67691.1| flagellar biosynthesis regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 449

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 231 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQSIALVSMDSFRIGAQEQLKTLGRILNVSVT 290

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G   A    +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 291 HVDPGQSLA----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSKNYL- 343

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + + H++PV
Sbjct: 344 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAIGHELPV 394

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 395 AYLTDGPRIPD 405


>gi|187925772|ref|YP_001897414.1| flagellar biosynthesis regulator FlhF [Burkholderia phytofirmans
           PsJN]
 gi|187716966|gb|ACD18190.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia phytofirmans PsJN]
          Length = 624

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 18/208 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 394 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVSVH 453

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G+D   LA    +        +++IDT G    + ++   I  +    +      P
Sbjct: 454 AVKDGADLQ-LALSELRNKH-----IVLIDTIGMSQRDRLVSDQIAMLCHAGQ------P 501

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              L +L+AT+  + L +V   +  A       G I+TK+D     GG++  V+ +K+PV
Sbjct: 502 VQRLLLLNATSHGDTLNEVVQAYQRAPDQQPLAGCILTKLDEATNLGGVLDTVIRYKLPV 561

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCL 314
           +++  G+ + +      K F    T C+
Sbjct: 562 HYVSTGQKVPENLYVATKKFLIKSTFCI 589


>gi|57168746|ref|ZP_00367877.1| flagellar biosynthetic protein FlhF, putative [Campylobacter coli
           RM2228]
 gi|305432512|ref|ZP_07401674.1| flagellar biosynthesis protein FlhF [Campylobacter coli JV20]
 gi|57019793|gb|EAL56476.1| flagellar biosynthetic protein FlhF, putative [Campylobacter coli
           RM2228]
 gi|304444551|gb|EFM37202.1| flagellar biosynthesis protein FlhF [Campylobacter coli JV20]
          Length = 476

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 13/187 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           ++++VG  GVGKTT + KL+ + +  D   K  +   DT+R  A++QL  +A       +
Sbjct: 276 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII 335

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S    D      EA K       +V+++DT G    +   +A   + +     +  +A 
Sbjct: 336 DSIEPKDLD----EAIKSLN--NCEVILVDTIGNSQYDQNKLAKTKEFL-----MHSNAE 384

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V  V+ A T    L ++    +      LI+TK D T   G +  ++    IP+ F  
Sbjct: 385 IDVSLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLSFFS 444

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 445 TGQEVPD 451


>gi|325928016|ref|ZP_08189233.1| flagellar GTP-binding protein [Xanthomonas perforans 91-118]
 gi|325541612|gb|EGD13137.1| flagellar GTP-binding protein [Xanthomonas perforans 91-118]
          Length = 335

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+++ +   A   V L   DT R    +QL  +  +      
Sbjct: 128 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG--IA 185

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E  +D+A    +  ++ +  K+  ++IDTAG    +  L A +   +R  +++     
Sbjct: 186 VHE--ADSAESLLDLLERLRDYKL--VLIDTAGMGQRDRALAAQL-NWLRAAQQV----- 235

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            + L VL A    + L +V    A A   G+++TK+D T R G  + +VV H++P+ ++ 
Sbjct: 236 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 294

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 295 DGQRVPD 301


>gi|262303835|gb|ACY44510.1| signal recognition particle [Orchesella imitari]
          Length = 101

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 36/55 (65%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + PV F+G GE I+DLEPF  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATESPVIFIGTGEHIDDLEPFKTKPFISKLLGMGD 66


>gi|262303811|gb|ACY44498.1| signal recognition particle [Ischnura verticalis]
 gi|262303819|gb|ACY44502.1| signal recognition particle [Plathemis lydia]
          Length = 101

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGD 66


>gi|330972454|gb|EGH72520.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 442

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 284 HIDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 388 AYLTDGPRIPD 398


>gi|330876036|gb|EGH10185.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 442

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 388 AYLTDGPRIPD 398


>gi|330964677|gb|EGH64937.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 442

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 388 AYLTDGPRIPD 398


>gi|325922771|ref|ZP_08184504.1| flagellar GTP-binding protein [Xanthomonas gardneri ATCC 19865]
 gi|325546746|gb|EGD17867.1| flagellar GTP-binding protein [Xanthomonas gardneri ATCC 19865]
          Length = 360

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 29/201 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  VI +VG  G GKTT I KL+++ +   A   V L   DT R    +QL  +  
Sbjct: 146 DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGR 205

Query: 164 RT-----SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +       AD   S +        Y+           +++IDTAG    +  L A +  +
Sbjct: 206 QLGIAVHEADSAESLLELLERLRDYK-----------LVLIDTAGMGQRDRALAAQLNWL 254

Query: 219 IRVLKRLDPHAPHSV--LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
                     A H V  L VL A    + L +V    A A   G+++TK+D T R G  +
Sbjct: 255 ---------RAAHQVTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSAL 305

Query: 277 PIVVTHKIPVYFLGVGEGIND 297
            +VV H++P+ ++  G+ + D
Sbjct: 306 SVVVDHQMPITWVTDGQRVPD 326


>gi|66046668|ref|YP_236509.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257375|gb|AAY38471.1| GTP-binding signal recognition particle SRP54, G-domain
           [Pseudomonas syringae pv. syringae B728a]
          Length = 442

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 284 HIDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 388 AYLTDGPRIPD 398


>gi|28869181|ref|NP_791800.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967542|ref|ZP_03395690.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv.
           tomato T1]
 gi|301382879|ref|ZP_07231297.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           tomato Max13]
 gi|302062795|ref|ZP_07254336.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           tomato K40]
 gi|302131295|ref|ZP_07257285.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28852421|gb|AAO55495.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927843|gb|EEB61390.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv.
           tomato T1]
 gi|331016987|gb|EGH97043.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 442

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 388 AYLTDGPRIPD 398


>gi|289678964|ref|ZP_06499854.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           syringae FF5]
          Length = 321

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 103 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 162

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 163 HIDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 215

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 216 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 266

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 267 AYLTDGPRIPD 277


>gi|262303791|gb|ACY44488.1| signal recognition particle [Eumesocampa frigilis]
          Length = 101

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG ARGGG +  V   + PV F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIITKLDGHARGGGALSAVAATQSPVTFIGTGEHIDDFEPFKTKPFISKLLGMGD 66


>gi|269103163|ref|ZP_06155860.1| flagellar biosynthesis protein FlhF [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163061|gb|EEZ41557.1| flagellar biosynthesis protein FlhF [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 528

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 31/196 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT I KL+ +  M     ++ L   DTFR  A +QL  +         
Sbjct: 310 VVALLGPTGVGKTTTIAKLAARAAMEFGPEQIALVTTDTFRIGAHEQLATYGRIIG---- 365

Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVL 222
           C   +  DA  LA +   Q + +++  +++DTAG      RL      LM   G  IR L
Sbjct: 366 CPVRVAKDAEELA-DILHQLRHRRL--VLLDTAGMGQRDIRLSEQLDTLMQNSGAHIRSL 422

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                        V+ AT  +  +++ +E F  +   +G ++TK+D +   G +I + + 
Sbjct: 423 L------------VMPATAQRRVMQETIEHFRRIP-LSGCVLTKLDESLSLGEVIAVTIQ 469

Query: 282 HKIPVYFLGVGEGIND 297
           + +P+ +L  G+ + +
Sbjct: 470 NALPIAYLADGQRVPE 485


>gi|294828140|ref|NP_712787.2| flagellar biosynthesis regulator FlhF [Leptospira interrogans
           serovar Lai str. 56601]
 gi|293385987|gb|AAN49805.2| flagellar biosynthesis regulator FlhF [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 426

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 107/247 (43%), Gaps = 22/247 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           ++Q  VEE+++K   +   + +     VL    E++ + +   S  F     ++  VI  
Sbjct: 162 MSQSYVEEIISKVEERLSPLDQGRNHAVLERTIEILKERVSVDSDLFRGTGKNQRKVIFF 221

Query: 117 VGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VG  G GKTT + KL+ K     G  V L   D +R AAI+QLK +AD     F      
Sbjct: 222 VGPTGSGKTTSVAKLAAKYFLHRGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY----- 276

Query: 176 SDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
                   + FK+  A+   ++++IDTAG  H N   +  + +M  +L           L
Sbjct: 277 ---PVKDIKKFKETLARDGSELILIDTAGYSHRN---LEQLERMNSLLSCFGEKDSVENL 330

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VL +T+  +    V   +       +++TK+D     GG + +  T+     +  VG+ 
Sbjct: 331 LVLSSTSSYHHTSTVLKAYESLNYRRILLTKLDEADFLGGFLELADTYSKSFTYYSVGQE 390

Query: 295 INDLEPF 301
           +    PF
Sbjct: 391 V----PF 393


>gi|308513335|ref|NP_954097.2| flagellar biosynthetic protein FlhF [Geobacter sulfurreducens PCA]
 gi|41152916|gb|AAR36447.2| flagellar biosynthetic protein FlhF, putative [Geobacter
           sulfurreducens PCA]
 gi|298507083|gb|ADI85806.1| flagellar biogenesis protein FlhF [Geobacter sulfurreducens KN400]
          Length = 451

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 14/191 (7%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +I +VG  GVGKTT I KL+   +   G +  L   D FR  A++QLK +     +  
Sbjct: 256 PRIIALVGPTGVGKTTTIAKLAAHYALREGHRAALITIDNFRVGAVEQLKTY-----SRI 310

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +   +   A A   EA  +  + K ++++IDTAGR H +S  +  +   +     ++ H 
Sbjct: 311 MGVPVEVAATAAELEAAIELHSDK-ELILIDTAGRSHKDSEKIEELKGFLESRFAIEIH- 368

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
               L +   T  +  L  VE F  V   + +I TK+D +   G ++   +  K P+ + 
Sbjct: 369 ----LCLAATTRDREVLEIVERF-GVLSVSRVIFTKLDESESYGSIVNAHLRTKFPLSYF 423

Query: 290 GVGEGI-NDLE 299
             G+ +  DLE
Sbjct: 424 TTGQRVPEDLE 434


>gi|330445381|ref|ZP_08309033.1| SRP54-type, GTPase domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489572|dbj|GAA03530.1| SRP54-type, GTPase domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 559

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 31/194 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT I KL+ +  M     ++ L   DT+R  A +QL  +         
Sbjct: 341 VVALLGPTGVGKTTTIAKLAARAAMEYGPEQIALVTTDTYRIGAHEQLATYG----RIMG 396

Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVL 222
           C   +  DA  LA +   Q + +++  +++DTAG      RL      LM   G  IR  
Sbjct: 397 CPVRVAKDAEELA-DILHQLRHRRL--VLLDTAGMGQRDIRLSEQLDTLMKNSGAHIR-- 451

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                    S L V+ AT+ +  L++ +E F  +   +G ++TK+D +   G +I + V 
Sbjct: 452 ---------SYL-VMPATSQRRVLQETIEHFRRIP-LSGCVLTKLDESLSLGEIICVAVQ 500

Query: 282 HKIPVYFLGVGEGI 295
           + +P+ +L  G+ +
Sbjct: 501 NALPIAYLADGQRV 514


>gi|45657255|ref|YP_001341.1| flagellar biosynthesis regulator FlhF [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600493|gb|AAS69978.1| flagellar GTP-binding protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 428

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 107/247 (43%), Gaps = 22/247 (8%)

Query: 62  VAQKIVEELLTKRYAKDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           ++Q  VEE+++K   +   + +     VL    E++ + +   S  F     ++  VI  
Sbjct: 164 MSQSYVEEIISKVEERLSPLDQGRNHAVLERTIEILKERVSVDSDLFRGTGKNQRKVIFF 223

Query: 117 VGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VG  G GKTT + KL+ K     G  V L   D +R AAI+QLK +AD     F      
Sbjct: 224 VGPTGSGKTTSVAKLAAKYFLHRGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY----- 278

Query: 176 SDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
                   + FK+  A+   ++++IDTAG  H N   +  + +M  +L           L
Sbjct: 279 ---PVKDIKKFKETLARDGSELILIDTAGYSHRN---LEQLERMNSLLSCFGEKDSVENL 332

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VL +T+  +    V   +       +++TK+D     GG + +  T+     +  VG+ 
Sbjct: 333 LVLSSTSSYHHTSTVLKAYESLNYRRILLTKLDEADFLGGFLELADTYSKSFTYYSVGQE 392

Query: 295 INDLEPF 301
           +    PF
Sbjct: 393 V----PF 395


>gi|325067024|ref|ZP_08125697.1| signal recognition particle protein [Actinomyces oris K20]
          Length = 158

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 1/83 (1%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           Q+V+  V+E + ++L   ++  +W     P +I++ G+ G GKTT+ GKL + + D G +
Sbjct: 72  QQVVKIVNEELIEVLGGQTREIHW-ADRGPTIIMLAGLQGAGKTTLAGKLGRWLRDQGKR 130

Query: 142 VMLAAGDTFRSAAIDQLKIWADR 164
           V+L A D  R  A+ QL + A+R
Sbjct: 131 VLLVASDLQRPNAVTQLSVVAER 153


>gi|195940204|ref|ZP_03085586.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4024]
          Length = 228

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%)

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+A    + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF
Sbjct: 1   GQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPF 60

Query: 302 VAKDFSAVITGCLD 315
                ++ I G  D
Sbjct: 61  HPDRIASRILGMGD 74


>gi|262303769|gb|ACY44477.1| signal recognition particle [Artemia salina]
          Length = 101

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V + K P+ F+G GE I+D EPF A+ F   + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVASTKSPIVFIGTGEHIDDFEPFKAEPFIRKLLGLGD 66


>gi|238927444|ref|ZP_04659204.1| flagellar biosynthesis protein FlhF [Selenomonas flueggei ATCC
           43531]
 gi|238884726|gb|EEQ48364.1| flagellar biosynthesis protein FlhF [Selenomonas flueggei ATCC
           43531]
          Length = 453

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +H   V   +G  GVGKTT + K++     +  LK  L   DT+R +A++QLK +A+   
Sbjct: 258 THGARVFAFIGTTGVGKTTTLAKIAAHFVLEQNLKGALITADTYRISAVEQLKKYAEILG 317

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +  E+   AA L  +A  + ++K  D +++DTAGR   N   M  +   +    R++
Sbjct: 318 ---LPVEVVYSAADL-RKAITRHRSK--DFILVDTAGRSQYNEFQMDELKDFLAAHPRME 371

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            H     L V   T  Q+A + +E F A      +I TK D T   G ++ ++  H +P+
Sbjct: 372 KH-----LVVSATTKEQDAAQIIERF-APCHPDRIIFTKTDETQTVGMVLNLLADHSLPL 425

Query: 287 YFLGVGEGIND 297
            FL  G+ + D
Sbjct: 426 SFLSNGQSVPD 436


>gi|262303797|gb|ACY44491.1| signal recognition particle [Endeis laevis]
          Length = 101

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66


>gi|302338098|ref|YP_003803304.1| flagellar biosynthetic protein FlhF [Spirochaeta smaragdinae DSM
           11293]
 gi|301635283|gb|ADK80710.1| flagellar biosynthetic protein FlhF [Spirochaeta smaragdinae DSM
           11293]
          Length = 401

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 22/195 (11%)

Query: 111 PHVILVVGVNGVGKTTVIGKLS--KKMSDAGLK---VMLAAGDTFRSAAIDQLKIWADRT 165
           P V++++G  GVGKTT I K++    +   G K   V L   D +R  A  Q++ + D  
Sbjct: 175 PQVMILIGPTGVGKTTTIAKMAAIHSLGTKGEKQKSVRLITIDNYRIGARQQIETYGDIM 234

Query: 166 SADFVCSEIGSD--AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL- 222
                C E   +     L Y        K  D++++DT G+   + + +A + +M+    
Sbjct: 235 GVPVSCVETYQELQKQVLIY--------KDTDLVLVDTIGKSPKDYVNLAKMREMLSACG 286

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            R + H   S      A+  ++ L Q E F    G + +++TK+D T R G +I  +   
Sbjct: 287 TRAEVHLALSA--TTKASDVKDILAQFEPF----GYSSVVLTKLDETMRIGNIISSLYEK 340

Query: 283 KIPVYFLGVGEGIND 297
           +  + ++  G+ + +
Sbjct: 341 RKTLSYITNGQSVPE 355


>gi|262303761|gb|ACY44473.1| signal recognition particle [Ammothea hilgendorfi]
          Length = 101

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66


>gi|330961238|gb|EGH61498.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 442

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 284 HIDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 387

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 388 AYLTDGPRIPD 398


>gi|262303759|gb|ACY44472.1| signal recognition particle [Achelia echinata]
          Length = 101

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66


>gi|229591834|ref|YP_002873953.1| flagellar biosynthesis regulator FlhF [Pseudomonas fluorescens
           SBW25]
 gi|229363700|emb|CAY51079.1| putative flagellar biosynthesis protein [Pseudomonas fluorescens
           SBW25]
          Length = 438

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D++R  A +QLK      +    
Sbjct: 220 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNIALVSMDSYRIGAQEQLKTLGRILNVSVT 279

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G   A     A      K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 280 HVDPGQSLA----NALDPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSKNYL- 332

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 333 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 383

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 384 AYLTDGPRIPD 394


>gi|261855328|ref|YP_003262611.1| flagellar biosynthetic protein FlhF [Halothiobacillus neapolitanus
           c2]
 gi|261835797|gb|ACX95564.1| flagellar biosynthetic protein FlhF [Halothiobacillus neapolitanus
           c2]
          Length = 485

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 15/229 (6%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           L K+ A+D + Q     +S  +  +   +S P    F     +   +G  GVGKTT + K
Sbjct: 229 LAKKLAQDAARQEPDRALSAALKSLGENISAPAQSAFMQG-GMFAFIGPTGVGKTTTLAK 287

Query: 131 LSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           ++ +  ++     V L   D FR  A +QL+ +A   +   +   +  D   LA E    
Sbjct: 288 IAAQAVLAHGRDSVALITTDRFRIGAQEQLRNYARILN---IPLHVARDEQHLA-ELLPA 343

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
             +K++  ++IDTAG    +  +M  + K+  + +RL+      VL VL A    +A+  
Sbjct: 344 VSSKRL--VLIDTAGMSPRDMHMMDALKKLPVINERLN------VLLVLSAQAQYSAMTD 395

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                 V    G+I+TK+D T   G  +  ++  ++P+   GVG+ + +
Sbjct: 396 AINRFQVLPLAGMILTKLDETILLGSALAALIHGRLPLVCTGVGQRVPE 444


>gi|157813200|gb|ABV81345.1| putative signal recognition particle protein [Podura aquatica]
          Length = 101

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V     PV F+G+GE I+D+EPF  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATNSPVIFIGIGEHIDDIEPFKTKPFISKLLGMGD 66


>gi|262276380|ref|ZP_06054189.1| flagellar biosynthesis protein FlhF [Grimontia hollisae CIP 101886]
 gi|262220188|gb|EEY71504.1| flagellar biosynthesis protein FlhF [Grimontia hollisae CIP 101886]
          Length = 536

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 29/193 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI ++G  GVGKTT I KL+ + + D G + + L   DTFR  A +QL  +         
Sbjct: 318 VIALLGPTGVGKTTTIAKLAARAAMDFGPEDIALVTTDTFRIGAHEQLATYGRILGCPVK 377

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVLK 223
            ++   + A + Y      Q +   ++++DTAG      RL      L+   G  IR L 
Sbjct: 378 VAKDADELADILY------QLRHRRLILLDTAGMGQRDLRLSEQLDTLIQNNGSHIRSLL 431

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                       VL AT+ +  L++ ++ F  +   +G ++TK+D +   G L+ + + +
Sbjct: 432 ------------VLPATSQRRVLQETIDHFRRIP-LSGCVLTKLDESLSLGELLSVTIEN 478

Query: 283 KIPVYFLGVGEGI 295
            +PV +L  G+ +
Sbjct: 479 ALPVTYLADGQRV 491


>gi|94266373|ref|ZP_01290072.1| GTP-binding signal recognition particle SRP54, G-domain [delta
           proteobacterium MLMS-1]
 gi|93453025|gb|EAT03513.1| GTP-binding signal recognition particle SRP54, G-domain [delta
           proteobacterium MLMS-1]
          Length = 410

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 20/217 (9%)

Query: 101 KPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158
           +P N D     P +I +VG  GVGKTT   KL+   +     KV L + D +R  A DQL
Sbjct: 187 RPLNLDQRGAGPLIIALVGPTGVGKTTTAAKLAAWFTLHENAKVALLSMDCYRIGATDQL 246

Query: 159 KIWAD--RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           + +A   R   +    +   +AA   +        +  D++IIDTAG+   +   +  + 
Sbjct: 247 RTYARIMRLPCEIAMKQHDLEAALRKH--------RDRDLIIIDTAGKSPFDENHVPELD 298

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           +       + P+       VL AT  +  + ++   +   G    I+TK+D T     L 
Sbjct: 299 RWFANHAEIMPYL------VLSATAKKEDINRIIATYRPLGIPAAILTKLDETRAYAALC 352

Query: 277 PIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
             +   ++P+  L  G+ +  D  P  +KDF   + G
Sbjct: 353 QQMTKAELPIACLCTGQKVPEDFRP-ASKDFLKTLFG 388


>gi|32475305|ref|NP_868299.1| flagellar biosynthesis protein FlhF [Rhodopirellula baltica SH 1]
 gi|32445846|emb|CAD78577.1| flagellar biosynthesis protein FlhF [Rhodopirellula baltica SH 1]
          Length = 464

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 109/255 (42%), Gaps = 34/255 (13%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD----IGVAVAQKIVEELLTKRY 75
           G+AS  L       D +S R L  GV E      + S      G+A ++  V+       
Sbjct: 164 GYASGELS----PADSLSLRLLQAGVEESTARRWMASASSFAAGIANSESAVQ------- 212

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
               S QR +  +   + + L  L  P       R HV+ +VG  GVGKTT + KL+   
Sbjct: 213 ----SDQRWMEHLQRAVARELN-LCGPIRTQPGDR-HVVALVGPTGVGKTTTVAKLAAGF 266

Query: 136 S-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             +A  +V L   DT+R AA+ QLK +A+         E   +    A  A        V
Sbjct: 267 RIEARRRVGLLTIDTYRIAAVQQLKAYAEIMDLPMQVVE-KPEQMETALSAL-----GDV 320

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D+++IDTAGR   +    A I ++   L+   P   H VL     ++G+N    +E F  
Sbjct: 321 DLVLIDTAGRSPRSD---ARIEQLSEFLRAAHPDETHLVLSA--TSSGENIRTTLEGFAP 375

Query: 255 VAGTTGLIMTKMDGT 269
           V     + +TK+D T
Sbjct: 376 VRA-NAVTLTKLDET 389


>gi|327540925|gb|EGF27483.1| flagellar biosynthesis protein FlhF [Rhodopirellula baltica WH47]
          Length = 463

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 109/255 (42%), Gaps = 34/255 (13%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD----IGVAVAQKIVEELLTKRY 75
           G+AS  L       D +S R L  GV E      + S      G+A ++  V+       
Sbjct: 163 GYASGELS----PADSLSLRLLQAGVEESTARRWMASASSFAAGIANSESAVQ------- 211

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
               S QR +  +   + + L  L  P       R HV+ +VG  GVGKTT + KL+   
Sbjct: 212 ----SDQRWMEHLQRAVARELN-LCGPIRTQPGDR-HVVALVGPTGVGKTTTVAKLAAGF 265

Query: 136 S-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             +A  +V L   DT+R AA+ QLK +A+         E   +    A  A        V
Sbjct: 266 RIEARRRVGLLTIDTYRIAAVQQLKAYAEIMDLPMQVVE-KPEQMETALSAL-----GDV 319

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D+++IDTAGR   +    A I ++   L+   P   H VL     ++G+N    +E F  
Sbjct: 320 DLVLIDTAGRSPRSD---ARIEQLSEFLRAAHPDETHLVLSA--TSSGENIRTTLEGFAP 374

Query: 255 VAGTTGLIMTKMDGT 269
           V     + +TK+D T
Sbjct: 375 VRA-NAVTLTKLDET 388


>gi|262303775|gb|ACY44480.1| signal recognition particle [Nymphon unguiculatum-charcoti complex
           sp. SEM-1997]
          Length = 101

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKVKPFISKLLGMGD 66


>gi|22596847|gb|AAN03365.1|AF481091_2 FlhF [Pseudomonas fluorescens]
          Length = 438

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D++R  A +QLK      +    
Sbjct: 220 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNIALVSMDSYRIGAQEQLKTLGRILNVTVT 279

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G   A     A      K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 280 HVDPGQSLA----NALDPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSKNYL- 332

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 333 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 383

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 384 AYLTDGPRIPD 394


>gi|92114136|ref|YP_574064.1| GTP-binding signal recognition particle SRP54, G-protein
           [Chromohalobacter salexigens DSM 3043]
 gi|91797226|gb|ABE59365.1| GTP-binding signal recognition particle SRP54, G-protein
           [Chromohalobacter salexigens DSM 3043]
          Length = 729

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 26/196 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT   K + +  M   G  V L   D +R  A +QL+I+A     D  
Sbjct: 170 VFALVGPTGVGKTTTTAKFAARYVMRFGGDDVALVTTDDYRIGAHEQLRIYARLLGVDVH 229

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDP 227
                 D   L      + + K++  +I+DT G    +  +   +A +G   R ++RL  
Sbjct: 230 AVHHEDDLEGL----LTRLEGKRM--VIVDTVGMSQRDQRVAGQIARLGGAARPVRRL-- 281

Query: 228 HAPHSVLQVLDATTGQNALRQV-EMFH-----AVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                   +L+A +  + L +V E +      A A   G ++TK+D   R G ++ +V+ 
Sbjct: 282 -------LLLNAASHGDTLEEVVETYQRASRDAGAPLYGCLLTKVDEAPRLGAVLDVVMR 334

Query: 282 HKIPVYFLGVGEGIND 297
           H++ +Y++  G+ + +
Sbjct: 335 HRLRLYYVSHGQRVPE 350


>gi|308048767|ref|YP_003912333.1| flagellar biosynthetic protein FlhF [Ferrimonas balearica DSM 9799]
 gi|307630957|gb|ADN75259.1| flagellar biosynthetic protein FlhF [Ferrimonas balearica DSM 9799]
          Length = 486

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 15/188 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  GVGKTT I KL+ + ++  G+ +V L   D +R  A +QL  +         
Sbjct: 273 VIALVGPTGVGKTTTIAKLAARFVARYGINQVALVTTDNYRIGAQEQLATFGKIMGCPVR 332

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +    +  ++ Y      Q +   +++IDTAG    +  L+  + ++ R   RL P  P
Sbjct: 333 SAASVEELESVIY------QLRSRRLILIDTAGMGQRDMRLVEQLDQLTRS-TRL-PIKP 384

Query: 231 HSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           + VL    AT     L++ VE F  +    G I+TK+D     G  + +++ +++PV +L
Sbjct: 385 YLVL---SATAQYRVLKETVERFRQI-DLAGCILTKLDEAHNIGEALSVLIQNRLPVCYL 440

Query: 290 GVGEGIND 297
             G+ + +
Sbjct: 441 TDGQRVPE 448


>gi|292493582|ref|YP_003529021.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Nitrosococcus halophilus Nc4]
 gi|291582177|gb|ADE16634.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Nitrosococcus halophilus Nc4]
          Length = 393

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 35/205 (17%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           ++ ++G  GVGKTT + K++ + +   G+  V L   D+FR  A +QL  +        V
Sbjct: 176 IVALIGPTGVGKTTSVAKIAARFALRRGIHSVALVTTDSFRIGAQEQLHTYGRILG---V 232

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMAGIGKMIRVLKR 224
             ++  D  AL  E        +  +++IDTAG       L     ++AG G  IR    
Sbjct: 233 PVKVAQDRQAL--EEILDGLLDR-QLVLIDTAGMSQRDMHLTKQFAMLAGGGPKIRNYL- 288

Query: 225 LDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                      VL A T  +AL +V + F+ V   +G I+TK+D  A  GG++  V+ H+
Sbjct: 289 -----------VLSAATQSSALDEVVQQFNRVE-LSGCILTKIDEAASLGGIVSTVIRHQ 336

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSA 308
           +P+ ++  G+        V +DF A
Sbjct: 337 LPLAYISDGQ-------RVPEDFGA 354


>gi|293604996|ref|ZP_06687392.1| GTP-binding signal recognition particle SRP54 [Achromobacter
           piechaudii ATCC 43553]
 gi|292816601|gb|EFF75686.1| GTP-binding signal recognition particle SRP54 [Achromobacter
           piechaudii ATCC 43553]
          Length = 1117

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 21/190 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT + KL+ +    +   +V +   D FR  A++QL+I+        V
Sbjct: 511 VYALVGPTGVGKTTTLAKLAARCVAREGRDQVAMLTTDLFRIGALEQLQIYGRLMG---V 567

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +    DAA L     +    K   +++IDT G +     L+A    M+      +   P
Sbjct: 568 PAHSVRDAAELRRILAELGNRK---IVLIDTTG-ISQRDRLVAEQAAML-----CNAGKP 618

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAG-----TTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              L VL+A +  + L +V   HA          G I+TK+D   R G  +   + H++P
Sbjct: 619 VRRLLVLNAASQGDTLDEVA--HAYRNGVGEDVAGCIITKLDEATRLGAALDTAIRHRLP 676

Query: 286 VYFLGVGEGI 295
           ++++ VG+ +
Sbjct: 677 IHYMSVGQKV 686


>gi|170701721|ref|ZP_02892660.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia ambifaria IOP40-10]
 gi|170133384|gb|EDT01773.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia ambifaria IOP40-10]
          Length = 374

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 18/191 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+        V
Sbjct: 144 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 200

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  L       ++ +   +++IDT G    +  L   I  +         +AP
Sbjct: 201 PVHAVKDAGDLE---LALSELRNKHIVLIDTIGMSQRDRALSDQIAMLHGA------NAP 251

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              L +L+AT+  + L +V   +  A       G I+TK+D     GG++  V+ +K+PV
Sbjct: 252 VQRLLLLNATSHGDTLNEVVQAYRSAAEYPDLAGCILTKLDEATHLGGVLDTVIRYKLPV 311

Query: 287 YFLGVGEGIND 297
           +++  G+ + +
Sbjct: 312 HYVSTGQKVPE 322


>gi|157813208|gb|ABV81349.1| putative signal recognition particle protein [Tanystylum
           orbiculare]
          Length = 101

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKVKPFVSKLLGMGD 66


>gi|262303861|gb|ACY44523.1| signal recognition particle [Tomocerus sp. 'Tom2']
          Length = 101

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATSSPIIFIGTGEHIDDLEPFKTKPFISKLLGMGD 66


>gi|94312632|ref|YP_585841.1| putative flagellar biosynthetic protein FlhF [Cupriavidus
           metallidurans CH34]
 gi|93356484|gb|ABF10572.1| putative flagellar biosynthetic protein FlhF [Cupriavidus
           metallidurans CH34]
          Length = 825

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 24/195 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT   KL+ +  +     ++ L   D FR  A +QL+I+ D      V
Sbjct: 194 VLALIGPTGVGKTTTTAKLAARYVLRHGADRLALLTTDRFRIGAHEQLRIYGDILG---V 250

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DAA L    F  +  K   ++IIDT G    +  L   I  +  V       AP
Sbjct: 251 PVHAVKDAADLR---FALSAMKDKHLVIIDTVGMSQRDRSLSDQIAMLAGV------QAP 301

Query: 231 HSVLQVLDATTGQNALRQVEMFHA--------VAGTTGLIMTKMDGTARGGGLIPIVVTH 282
              + +L+     + L   E+ HA          G  G I++K+D     G ++ +V+ H
Sbjct: 302 MQRVLLLNGAAHGDTLN--EVVHAYRHDAAGDAGGIDGCIISKLDEATHLGSVLDVVIRH 359

Query: 283 KIPVYFLGVGEGIND 297
           ++PV++   G+ + +
Sbjct: 360 RLPVFYASTGQRVPE 374


>gi|157813188|gb|ABV81339.1| putative signal recognition particle protein [Lithobius forticatus]
          Length = 101

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATRSPIIFIGTGEHIDDFEPFKVKPFVSKLMGMGD 66


>gi|6969593|gb|AAF33830.1|AF226282_4 flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae]
          Length = 561

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+++ +       V L   DT R    +QL  +  +      
Sbjct: 354 VIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQLG--IA 411

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E  +D+A    + F++ +  K+  ++IDTAG    +  L A +   +R  +++     
Sbjct: 412 VHE--ADSAESLLDLFERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 461

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            + L VL A    + L +V    A A   G+++TK+D T   G  + +VV H++P+ ++ 
Sbjct: 462 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGSFGSALSVVVDHQMPITWVT 520

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 521 DGQRVPD 527


>gi|330954980|gb|EGH55240.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae Cit 7]
          Length = 59

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 34/48 (70%)

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F
Sbjct: 1   TGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPF 48


>gi|157813206|gb|ABV81348.1| putative signal recognition particle protein [Triops longicaudatus]
          Length = 101

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + PV F+G GE I D EPF  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATRSPVIFIGTGEHIEDFEPFKTKPFVSKLLGLGD 66


>gi|157813204|gb|ABV81347.1| putative signal recognition particle protein [Thulinius stephaniae]
          Length = 101

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%)

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F +      +I+TK+DG ARGGG +  V   + PV F+G GE I++ E F AK F + + 
Sbjct: 3   FKSKVNVASVIITKLDGHARGGGALSAVAATQSPVIFIGTGEHIDEFELFKAKSFVSKLL 62

Query: 312 GCLD 315
           G  D
Sbjct: 63  GMGD 66


>gi|312962256|ref|ZP_07776748.1| flagellar biosynthesis protein FlhF [Pseudomonas fluorescens WH6]
 gi|311283593|gb|EFQ62182.1| flagellar biosynthesis protein FlhF [Pseudomonas fluorescens WH6]
          Length = 438

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D++R  A +QLK      +    
Sbjct: 220 VIAMVGPAGMGKTTTLAKLAARYVLKYGAHNIALVSMDSYRIGAQEQLKTLGRILNVPVT 279

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G   A     A      K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 280 HVDPGQSLA----NALDPLLRKRV--VLIDTAGLQASDPALRLQLESLAGRGIKSKNYL- 332

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 333 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 383

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 384 AYLTDGPRIPD 394


>gi|94264041|ref|ZP_01287841.1| GTP-binding signal recognition particle SRP54, G-domain [delta
           proteobacterium MLMS-1]
 gi|93455552|gb|EAT05739.1| GTP-binding signal recognition particle SRP54, G-domain [delta
           proteobacterium MLMS-1]
          Length = 410

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 19/206 (9%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWAD--RTSA 167
           P +I +VG  GVGKTT   KL+   +     KV L + D +R  A DQL+ +A   R   
Sbjct: 198 PLIIALVGPTGVGKTTTAAKLAAWFTLHENAKVALLSMDCYRIGATDQLRTYARIMRLPC 257

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           +    +   +AA   +        +  D++IIDTAG+   +   +  + +       + P
Sbjct: 258 EIAMKQHDLEAALRKH--------RDRDLIIIDTAGKSPFDENHVPELDRWFANHAEIMP 309

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
           +       VL AT  +  + ++   +   G    I+TK+D T     L   +   ++P+ 
Sbjct: 310 YL------VLSATAKKEDINRIIATYRPLGIPAAILTKLDETRAYAALCQQMTKAELPIA 363

Query: 288 FLGVGEGI-NDLEPFVAKDFSAVITG 312
            L  G+ +  D  P  +KDF   + G
Sbjct: 364 CLCTGQKVPEDFRP-ASKDFLKTLFG 388


>gi|262303771|gb|ACY44478.1| signal recognition particle [Semibalanus balanoides]
          Length = 101

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFRTKPFISKLLGMGD 66


>gi|157813212|gb|ABV81351.1| putative signal recognition particle protein [Cydia pomonella]
          Length = 101

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F   + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFINKLLGMGD 66


>gi|163856426|ref|YP_001630724.1| flagellar biosynthesis regulator FlhF [Bordetella petrii DSM 12804]
 gi|163260154|emb|CAP42456.1| flagellar biosynthesis protein FlhF [Bordetella petrii]
          Length = 778

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 29/196 (14%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT + KL+ +    +   +V +   D FR  A++QL+I+        V
Sbjct: 179 VYALVGPTGVGKTTTLAKLAARCVAREGREQVAMLTTDNFRIGALEQLQIYGRLMG---V 235

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG---RLHN---NSILMAGIGKMIRVLKR 224
            +    D A L     +    K V   +IDT G   R  N    + L+ G G+ +R L  
Sbjct: 236 PARSVRDVAELRATLAELGDRKMV---LIDTTGISQRDRNVAAQAALLCGAGRPVRRLL- 291

Query: 225 LDPHAPHSVLQVLDATTGQNALRQV-EMFHAVAG--TTGLIMTKMDGTARGGGLIPIVVT 281
                      VL+A +  + L +V   +   AG    G I+TK+D  +R G  +   V 
Sbjct: 292 -----------VLNAASQGDTLDEVAHAYRHGAGEDVAGCIITKLDEASRLGPALDTAVR 340

Query: 282 HKIPVYFLGVGEGIND 297
           H++PV+++ VG+ + +
Sbjct: 341 HRLPVHYVCVGQKVPE 356


>gi|89073428|ref|ZP_01159951.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
 gi|89050692|gb|EAR56173.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
          Length = 511

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 31/194 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT I KL+ +  M     ++ L   DT+R  A +QL  +         
Sbjct: 293 VVALLGPTGVGKTTTIAKLAARAAMEFGPEQIALVTTDTYRIGAHEQLATYG----RIMG 348

Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVL 222
           C   +  DA  LA +   Q + +++  +++DTAG      RL      LM   G  IR  
Sbjct: 349 CPVRVAKDAEELA-DILHQLRHRRL--VLLDTAGMGQRDIRLSEQLDTLMKNSGAHIR-- 403

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                    S L V+ AT+ +  L++ +E F  +   +G ++TK+D +   G +I + + 
Sbjct: 404 ---------SYL-VMPATSQRRVLQETIEHFRRIP-LSGCVLTKLDESLSLGEIICVAIQ 452

Query: 282 HKIPVYFLGVGEGI 295
           + +P+ +L  G+ +
Sbjct: 453 NALPIAYLADGQRV 466


>gi|188576805|ref|YP_001913734.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188576998|ref|YP_001913927.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188521257|gb|ACD59202.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521450|gb|ACD59395.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 551

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+++ +       V L   DT R    +QL  +  +      
Sbjct: 344 VIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQLG--IA 401

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E  +D+A    + F++ +  K+  ++IDTAG    +  L A +   +R  +++     
Sbjct: 402 VHE--ADSAESLLDLFERLRDYKL--VLIDTAGMGQRDRALAAQLN-WLRAAQQV----- 451

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            + L VL A    + L +V    A A   G+++TK+D T   G  + +VV H++P+ ++ 
Sbjct: 452 -TSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGSFGSALSVVVDHQMPITWVT 510

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 511 DGQRVPD 517


>gi|325524166|gb|EGD02312.1| flagellar biosynthesis regulator FlhF [Burkholderia sp. TJI49]
          Length = 330

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 23/199 (11%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+      
Sbjct: 92  RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG- 150

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V      DA  LA      ++ +   +++IDT G    +      +   I +L   + 
Sbjct: 151 --VPVHAVKDAGDLA---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLHGAN- 200

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGT---------TGLIMTKMDGTARGGGLIPI 278
            AP   L +L+AT+  + L +V   +  AG           G I+TK+D     GG +  
Sbjct: 201 -APVQRLLLLNATSHGDTLNEVVQAYRSAGQHPHAAAPDLAGCILTKLDEATHLGGALDT 259

Query: 279 VVTHKIPVYFLGVGEGIND 297
           V+ +K+PV+++  G+ + +
Sbjct: 260 VIRYKLPVHYVSTGQKVPE 278


>gi|85712285|ref|ZP_01043336.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
 gi|85693912|gb|EAQ31859.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
          Length = 433

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 17/196 (8%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R   + +VG  GVGKTT I KL+ + +       V L   DTFR  A +QLK++  
Sbjct: 213 DILTRGGAVALVGPTGVGKTTTIAKLAARYAQRHGSDSVALITTDTFRIGASEQLKVYGR 272

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                    +I +DA  LA +A    + K+  +++IDTAG    +  L   +G++++  +
Sbjct: 273 IIGCPV---KIANDAKELA-DAMLSLRDKR--LILIDTAGMGQRDKRLSEQLGQILQNKR 326

Query: 224 -RLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            R+ P+       VL AT     L   V+ F  +    G I TK+D     G  I + + 
Sbjct: 327 LRIRPYL------VLSATAQTQVLNDTVKQFKTLP-LAGCIFTKLDECLSLGESISVAIE 379

Query: 282 HKIPVYFLGVGEGIND 297
             + V +L  G+ + +
Sbjct: 380 QGLAVGYLTHGQQVPE 395


>gi|300311343|ref|YP_003775435.1| flagellar biosynthesis GTP-binding protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074128|gb|ADJ63527.1| flagellar biosynthesis GTP-binding protein [Herbaspirillum
           seropedicae SmR1]
          Length = 494

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 114/260 (43%), Gaps = 29/260 (11%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L+ ++++  +    +  +   L+T+    +   Q +++ V  ++ + L  L+     
Sbjct: 203 REPLKGIVLKEMLAAGFSASL-SRLITENLPANSKSQDIMFWVKSVLARNLNTLAN--EN 259

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           +      V  +VG  GVGKTT   KL+ +  M     K+ L   D +R    +QL+I+  
Sbjct: 260 ELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSGKLALITTDGYRIGGYEQLRIYG- 318

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI------LMAGIGK 217
           +     V S        +A E  K         ++IDTAG    + +      ++ G G 
Sbjct: 319 KILGVMVHSVKDETDLRIALEELKGKH-----TVLIDTAGVGQRDQMVAEQDAMLTGAGV 373

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            I+ L              L+AT     L +V   ++ +G  G I+TK+D  A  G ++ 
Sbjct: 374 DIKRLL------------CLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVLD 421

Query: 278 IVVTHKIPVYFLGVGEGIND 297
           +V+ HK+ ++++  G+ + +
Sbjct: 422 VVIRHKLNLHYVANGQRVPE 441


>gi|262303773|gb|ACY44479.1| signal recognition particle [Ctenolepisma lineata]
          Length = 101

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKTKPFVSKLLGMGD 66


>gi|223041121|ref|ZP_03611376.1| flagellar biosynthetic protein FlhF [Campylobacter rectus RM3267]
 gi|222877615|gb|EEF12741.1| flagellar biosynthetic protein FlhF [Campylobacter rectus RM3267]
          Length = 468

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 38/260 (14%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E +  +  A   +V+R     S L+ KML   S+  N     +  ++++VG  GVGKTT 
Sbjct: 231 ENMSPQMKANPTAVRRYF---SSLLRKMLPCRSEEDN----RKQKIMMLVGPTGVGKTTT 283

Query: 128 IGKLSKKMSDAG---LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           + KL+ + +       K  +   DT+R  A++QL  +A       +          +  E
Sbjct: 284 LAKLAARFAYGEGRRAKTGIITLDTYRIGAVEQLFQYAKMMKLPIL--------DVIEVE 335

Query: 185 AFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV---LDA 239
            FK A  Q    +V++IDT G    +   +A          RL+    HS  Q+   L  
Sbjct: 336 DFKNALKQLNHCEVILIDTTGSSQYDKEKLA----------RLEMFLKHSDAQIDVNLVL 385

Query: 240 TTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           + G      +E+++  +      LI+TK D T   G +  +V     PV F  +G+ + D
Sbjct: 386 SAGSKIDDMLEIYNGFSFLDIDTLIITKFDETKIFGNVFSLVYEINKPVSFFCLGQEVPD 445

Query: 298 LEPFVAKDFSAVITGCLDYG 317
            +  VAK  S  +  CL  G
Sbjct: 446 -DIMVAK--SEFLVDCLLQG 462


>gi|262303829|gb|ACY44507.1| signal recognition particle [Machiloides banksi]
 gi|262303849|gb|ACY44517.1| signal recognition particle [Pedetontus saltator]
          Length = 101

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATESPIIFIGTGEHIDDFEPFKTKPFVSKLLGMGD 66


>gi|262303853|gb|ACY44519.1| signal recognition particle [Scutigera coleoptrata]
          Length = 101

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATESPIIFIGTGEHIDDFEPFKVKPFVSKLMGLGD 66


>gi|262303781|gb|ACY44483.1| signal recognition particle [Craterostigmus tasmanianus]
          Length = 101

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSKLMGMGD 66


>gi|295678069|ref|YP_003606593.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1002]
 gi|295437912|gb|ADG17082.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1002]
          Length = 662

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 18/212 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 428 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 487

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              V      D+A L       ++ +   +++IDT G    + ++   I  + R  +   
Sbjct: 488 ---VSVHAVKDSADLQ---LALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLSRAGQ--- 538

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTH 282
              P   L +L+AT+  + L +V   +  A       G I+TK+D     GG++  V+ +
Sbjct: 539 ---PVQRLLLLNATSHGDTLNEVVQAYQRAPDQQPLAGCILTKLDEATNLGGVLDTVIRY 595

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           K+PV+++  G+ + +      K F    T C+
Sbjct: 596 KLPVHYVSTGQKVPENLYVATKKFLIKSTFCI 627


>gi|222823274|ref|YP_002574847.1| flagellar biosynthesis (GTP-binding) protein FlhF [Campylobacter
           lari RM2100]
 gi|222538495|gb|ACM63596.1| flagellar biosynthesis (GTP-binding) protein FlhF [Campylobacter
           lari RM2100]
          Length = 461

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 22/240 (9%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           A+ +  +E + +   A   +VQR  Y    L+  ML     P   +    +  ++++VG 
Sbjct: 217 AIMKATIENMPSTMKANQEAVQRYFY---SLLRNML-----PCRIESEIKKQKIMMLVGP 268

Query: 120 NGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ + +  D   K  +   DT+R  A++QL  +A       + S   +D
Sbjct: 269 TGVGKTTTLAKLAFRYAYGDRRYKTGIITLDTYRIGAVEQLFQYAKMMKLPIIDSIEPTD 328

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +A +       +V+++DT G   N+    A + K    L     +A   V  VL
Sbjct: 329 LD----DAIRSLNT--CEVILVDTTG---NSQYDKAKLEKTKEFLSH--SNAQIDVNLVL 377

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            A T    L +     +      LI+TK D T   G +  ++     P+ F  +G+ + D
Sbjct: 378 SANTKYEDLLETYNNFSFLNIDTLIITKFDETKVFGNVFSLLYETSTPMSFFSIGQEVPD 437


>gi|262303787|gb|ACY44486.1| signal recognition particle [Derocheilocaris typicus]
          Length = 101

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  + F + + G  D G
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVRPFVSKLLGMGDIG 68


>gi|262303837|gb|ACY44511.1| signal recognition particle [Periplaneta americana]
          Length = 101

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKTKPFVSKLLGMGD 66


>gi|319787085|ref|YP_004146560.1| flagellar biosynthetic protein FlhF [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465597|gb|ADV27329.1| flagellar biosynthetic protein FlhF [Pseudoxanthomonas suwonensis
           11-1]
          Length = 459

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+ + +++ G + + L   DT R    +QL  +  +      
Sbjct: 252 VIALVGPTGAGKTTTIAKLAARFVAEHGPRDIALVTTDTHRIGGREQLYGYGRQLG--IA 309

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E  SDAA ++    ++ Q  ++  +++DTAG    +  L + +   +R  + +     
Sbjct: 310 VHEADSDAALVSL--LQRLQDYRL--VLVDTAGLGQRDRALASQL-NWLRAARNV----- 359

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            S L VL A      L +V      A   G+++TK+D T R G  + +VV H++P+ ++ 
Sbjct: 360 -STLLVLPANQHYADLDEVVRRFESARPQGVVLTKVDETGRLGSALSVVVDHQLPLTWMT 418

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 419 DGQRVPE 425


>gi|157813186|gb|ABV81338.1| putative signal recognition particle protein [Forficula
           auricularia]
 gi|262303833|gb|ACY44509.1| signal recognition particle [Nicoletia meinerti]
          Length = 101

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATESPIIFIGTGEHIDDFEPFKTKPFVSKLLGMGD 66


>gi|241650810|ref|XP_002410250.1| signal recognition particle receptor, alpha subunit, putative
           [Ixodes scapularis]
 gi|215501564|gb|EEC11058.1| signal recognition particle receptor, alpha subunit, putative
           [Ixodes scapularis]
          Length = 145

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 17/127 (13%)

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+  K+DV++IDTAGR+ +N  LM  + K+I V      ++P  VL V +A  G  A+ Q
Sbjct: 17  ARETKIDVVLIDTAGRMQDNEPLMRALAKLITV------NSPDLVLFVGEALVGNEAVDQ 70

Query: 249 VEMFH-AVAGTT---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           +  F+ A+A  +         G+++TK D    + G  I +      P+ F+G G+   D
Sbjct: 71  LVKFNQALADHSSQENPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYID 130

Query: 298 LEPFVAK 304
           L+   AK
Sbjct: 131 LKTINAK 137


>gi|262303757|gb|ACY44471.1| signal recognition particle [Acheta domesticus]
          Length = 101

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATESPIIFIGTGEHIDDFEPFKTKPFVSKLLGMGD 66


>gi|149908442|ref|ZP_01897105.1| flagellar biosynthesis protein [Moritella sp. PE36]
 gi|149808605|gb|EDM68540.1| flagellar biosynthesis protein [Moritella sp. PE36]
          Length = 488

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 96/189 (50%), Gaps = 23/189 (12%)

Query: 114 ILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           + +VG  GVGKTT I KL+ K  M      V L   DT+R  A +QL  +         C
Sbjct: 280 VALVGPTGVGKTTTIAKLAAKFAMLHGSDNVALITTDTYRIGAHEQLATYGRIMG----C 335

Query: 172 S-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI---RVLKRLDP 227
           + ++  D A LA   + Q ++K+  +++IDTAG    ++ L   +  ++   +V+ R   
Sbjct: 336 TVKVARDDAELAQYLY-QLRSKR--LVLIDTAGMGQRDTRLSEQLDSLVNNDKVVIR--- 389

Query: 228 HAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                   V+ AT  +  +++ +E FH +    G I++K+D +   G ++ +++ H++P+
Sbjct: 390 -----NYLVVPATAQRRVVQETLEHFHHIP-LAGCILSKVDESLSLGEVLSVLIQHQLPI 443

Query: 287 YFLGVGEGI 295
            ++  G+ +
Sbjct: 444 AYITNGQRV 452


>gi|90579942|ref|ZP_01235750.1| flagellar biosynthesis protein [Vibrio angustum S14]
 gi|90438827|gb|EAS64010.1| flagellar biosynthesis protein [Vibrio angustum S14]
          Length = 558

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 31/194 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT I KL+ +  M     ++ L   DT+R  A +QL  +         
Sbjct: 340 VVALLGPTGVGKTTTIAKLAARAAMEFGPDQIALVTTDTYRIGAHEQLATYG----RIMG 395

Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVL 222
           C   +  DA  LA +   Q + +++  +++DTAG      RL      LM   G  IR  
Sbjct: 396 CPVRVAKDAEELA-DILHQLRHRRL--VLLDTAGMGQRDIRLSEQLDTLMKNSGAHIR-- 450

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                    S L V+ AT+ +  L++ +E F  +   +G ++TK+D +   G +I + + 
Sbjct: 451 ---------SYL-VMPATSQRRVLQETIEHFRRIP-LSGCVLTKLDESLSLGEIICVAIQ 499

Query: 282 HKIPVYFLGVGEGI 295
           + +P+ +L  G+ +
Sbjct: 500 NALPIAYLADGQRV 513


>gi|262303825|gb|ACY44505.1| signal recognition particle [Lynceus sp. 'Lyn']
          Length = 101

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFRTKPFISKLLGLGD 66


>gi|237799253|ref|ZP_04587714.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022108|gb|EGI02165.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 443

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 225 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 284

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 285 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 337

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 338 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPV 388

Query: 287 YFLGVGEGIND 297
            +L  G  I +
Sbjct: 389 AYLTDGPRIPE 399


>gi|91785645|ref|YP_560851.1| flagellar biosynthesis regulator FlhF [Burkholderia xenovorans
           LB400]
 gi|91689599|gb|ABE32799.1| flagellar biosynthesis protein, flhF [Burkholderia xenovorans
           LB400]
          Length = 657

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 18/212 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 423 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 482

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 + G+D   LA    +        +++IDT G    + ++   I  +    +   
Sbjct: 483 VSVHAVKDGADLQ-LALSELRNKH-----IVLIDTIGMSQRDRLVSDQIAMLCHAGQ--- 533

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTH 282
              P   L +L+AT+  + L +V   +  A       G I+TK+D     GG++  V+ +
Sbjct: 534 ---PVQRLLLLNATSHGDTLNEVVQAYQRAPDQQPLAGCILTKLDEATNLGGVLDTVIRY 590

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           K+PV+++  G+ + +      + F    T C+
Sbjct: 591 KLPVHYVSTGQKVPENLYVATRKFLIKSTFCI 622


>gi|296157467|ref|ZP_06840302.1| flagellar biosynthetic protein FlhF [Burkholderia sp. Ch1-1]
 gi|295892239|gb|EFG72022.1| flagellar biosynthetic protein FlhF [Burkholderia sp. Ch1-1]
          Length = 650

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 18/212 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 416 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 475

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 + G+D   LA    +        +++IDT G    + ++   I  +    +   
Sbjct: 476 VSVHAVKDGADLQ-LALSELRNKH-----IVLIDTIGMSQRDRLVSDQIAMLCHAGQ--- 526

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTH 282
              P   L +L+AT+  + L +V   +  A       G I+TK+D     GG++  V+ +
Sbjct: 527 ---PVQRLLLLNATSHGDTLNEVVQAYQRAPDQQPLAGCILTKLDEATNLGGVLDTVIRY 583

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
           K+PV+++  G+ + +      + F    T C+
Sbjct: 584 KLPVHYVSTGQKVPENLYVATRKFLIKSTFCI 615


>gi|262303809|gb|ACY44497.1| signal recognition particle [Idiogaryops pumilis]
          Length = 101

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66


>gi|262303779|gb|ACY44482.1| signal recognition particle [Cryptocellus centralis]
 gi|262303793|gb|ACY44489.1| signal recognition particle [Eremocosta gigasella]
          Length = 101

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66


>gi|157813214|gb|ABV81352.1| putative signal recognition particle protein [Prodoxus
           quinquepunctellus]
          Length = 101

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F   + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKTKPFINKLLGMGD 66


>gi|315127304|ref|YP_004069307.1| flagellar biosynthesis regulator FlhF [Pseudoalteromonas sp.
           SM9913]
 gi|315015818|gb|ADT69156.1| flagellar biosynthesis regulator FlhF [Pseudoalteromonas sp.
           SM9913]
          Length = 496

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 13/185 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT + KL+          KV L   DT+R  A +QL  +         
Sbjct: 280 VFALVGPTGVGKTTTVAKLAALGAQKYGADKVALITTDTYRIGAYEQLATYGRIIGCGVK 339

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +  ++ A + Y        +   +++IDTAG    +  L   +  ++R  +R+D    
Sbjct: 340 QVKDANELAEVLY------HLRNKRLVLIDTAGMSQRDLRLTEQLNTLMRN-QRVDIR-- 390

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            S L VL AT   N L++          +G I TK+D +   G +I I + +++P+ +L 
Sbjct: 391 -SYL-VLSATAQINVLQETVRHFKKVQLSGCIFTKLDESLSLGEIISIAIQNRLPIGYLT 448

Query: 291 VGEGI 295
            G+ +
Sbjct: 449 NGQRV 453


>gi|161723184|ref|NP_243303.2| flagellar biosynthesis regulator FlhF [Bacillus halodurans C-125]
          Length = 381

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 17/185 (9%)

Query: 116 VVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +VG  GVGKTT I KL+   +     KV L   DT+R AA++QLK +A   +        
Sbjct: 190 IVGPTGVGKTTTIAKLAAHSVLKKKKKVALITTDTYRIAAVEQLKTYAKILNIPL----- 244

Query: 175 GSDAAALAYEAFKQAQAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                  + E F++A+ + +  D++++D+AGR   N++ +  + K+I        H   +
Sbjct: 245 ---EVVYSMEDFQKAKNQFIHYDLVLVDSAGRNFRNALYVKELEKVIDF-----KHEAEN 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L VL  T     ++ +    ++     +I TK D T   G ++ ++      V ++  G
Sbjct: 297 YL-VLSLTGKYRDMKAIIEQFSLVPIKQIIFTKQDETDTYGAMLNMMFEQGKGVAYVTNG 355

Query: 293 EGIND 297
           + + D
Sbjct: 356 QNVPD 360


>gi|262303847|gb|ACY44516.1| signal recognition particle [Polyxenus fasciculatus]
          Length = 100

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66


>gi|157813202|gb|ABV81346.1| putative signal recognition particle protein [Speleonectes
           tulumensis]
          Length = 101

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V     P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDFEPFKTKPFVSKLLGMGD 66


>gi|104782803|ref|YP_609301.1| flagellar biosynthesis regulator FlhF [Pseudomonas entomophila L48]
 gi|95111790|emb|CAK16514.1| flagellar biosynthetic protein FlhF [Pseudomonas entomophila L48]
          Length = 436

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D++R  A +QLK      +    
Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGANNLALVSMDSYRIGAQEQLKTLGRILNVPVT 277

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G   A    +A +    K+V  ++IDTAG   ++  L   +    G+ I     L 
Sbjct: 278 YVDPGESLA----QALEPLLRKRV--VLIDTAGLQASDPALRMQLETLAGRGIAAKNYL- 330

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV
Sbjct: 331 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETACLGEVLSLAISHELPV 381

Query: 287 YFLGVGEGIND 297
            +L  G  I D
Sbjct: 382 AYLTDGPRIPD 392


>gi|89094440|ref|ZP_01167380.1| flagellar biosynthetic protein FlhF, putative [Oceanospirillum sp.
           MED92]
 gi|89081332|gb|EAR60564.1| flagellar biosynthetic protein FlhF, putative [Oceanospirillum sp.
           MED92]
          Length = 474

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 24/199 (12%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D+  R  ++  VG  GVGKTT IGKL+ +  +      + L   DT+R AA +QL+ +  
Sbjct: 255 DYIERGGMLAFVGPTGVGKTTTIGKLAARHVLKYGSSSLALVTTDTYRIAAHEQLRTFGR 314

Query: 164 RTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG----RLHNNSILMAGIGKM 218
                  V  E  S       E     + K++  ++IDTAG      H+ S L       
Sbjct: 315 ILDVPVRVVDENNS-----LDEVLHSLRNKRL--VLIDTAGLNAQEPHSESQLEMLASVT 367

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +R+ K L          V+  ++ +  + Q    +   G  G +++KMD +   G  I +
Sbjct: 368 LRLKKLL----------VVSCSSQRRVVEQAYNAYQSLGLNGCVLSKMDESGSLGEAISL 417

Query: 279 VVTHKIPVYFLGVGEGIND 297
           +V  ++PV ++  G+ I D
Sbjct: 418 IVEKRLPVTYVTDGQRIPD 436


>gi|10175057|dbj|BAB06156.1| flagella-associated protein [Bacillus halodurans C-125]
          Length = 375

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 17/185 (9%)

Query: 116 VVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +VG  GVGKTT I KL+   +     KV L   DT+R AA++QLK +A   +        
Sbjct: 184 IVGPTGVGKTTTIAKLAAHSVLKKKKKVALITTDTYRIAAVEQLKTYAKILNIPL----- 238

Query: 175 GSDAAALAYEAFKQAQAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                  + E F++A+ + +  D++++D+AGR   N++ +  + K+I        H   +
Sbjct: 239 ---EVVYSMEDFQKAKNQFIHYDLVLVDSAGRNFRNALYVKELEKVIDF-----KHEAEN 290

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L VL  T     ++ +    ++     +I TK D T   G ++ ++      V ++  G
Sbjct: 291 YL-VLSLTGKYRDMKAIIEQFSLVPIKQIIFTKQDETDTYGAMLNMMFEQGKGVAYVTNG 349

Query: 293 EGIND 297
           + + D
Sbjct: 350 QNVPD 354


>gi|262303831|gb|ACY44508.1| signal recognition particle [Milnesium tardigradum]
          Length = 101

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F +      +I+TK+DG ARGGG +  V   + P+ F+G GE I+D E F  K F + + 
Sbjct: 3   FKSKVNVASVIITKLDGHARGGGALSAVAATQSPIIFIGTGEYIDDFESFKVKPFVSKLL 62

Query: 312 GCLD 315
           G  D
Sbjct: 63  GMGD 66


>gi|262303857|gb|ACY44521.1| signal recognition particle [Scolopendra polymorpha]
          Length = 101

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V     P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATASPIIFIGTGEHIDDFEPFKVKPFVSKLMGMGD 66


>gi|268678934|ref|YP_003303365.1| flagellar biosynthetic protein FlhF [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616965|gb|ACZ11330.1| flagellar biosynthetic protein FlhF [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 423

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 37/222 (16%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWAD--RTS 166
            V++ VG  GVGKTT I KL+ + S   +   KV +   DT+R  A++QL  +A   R  
Sbjct: 216 RVMMFVGPTGVGKTTTIAKLAARYSYIQEKRSKVGIITLDTYRIGAVEQLFAYAKMMRLP 275

Query: 167 ADFVC--SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            + V   ++  +  ++L++           DV++IDT G    +   +  + K ++    
Sbjct: 276 IEDVVDPNDFNNALSSLSH----------CDVILIDTVGSSQYDKEKLVKLNKFLQ---- 321

Query: 225 LDPHAPHSVLQ-----VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
                 +S LQ     VL A      L+++    +      LI TK D T   G +  ++
Sbjct: 322 ------NSQLQIDVNLVLSAGCKLEDLKEIYKNFSFLDIDTLIFTKFDETKAFGTIFSLI 375

Query: 280 VTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320
                PV +  +G+ + +D+ P  + DF   +  C+  G EK
Sbjct: 376 YDTDKPVSYFSIGQEVPDDIVP-ASSDF---LVECILEGFEK 413


>gi|262303841|gb|ACY44513.1| signal recognition particle [Polyzonium germanicum]
          Length = 101

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATESPIIFIGSGEHIDDFEPFKVKPFVSKLLGMGD 66


>gi|262303763|gb|ACY44474.1| signal recognition particle [Abacion magnum]
          Length = 98

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATQSPIIFIGSGEHIDDFEPFKVKPFVSKLLGMGD 66


>gi|157813196|gb|ABV81343.1| putative signal recognition particle protein [Narceus americanus]
          Length = 101

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATESPIIFIGSGEHIDDFEPFKVKPFVSKLLGMGD 66


>gi|115350239|ref|YP_772078.1| flagellar biosynthesis regulator FlhF [Burkholderia ambifaria AMMD]
 gi|115280227|gb|ABI85744.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Burkholderia ambifaria AMMD]
          Length = 588

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 18/191 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+        V
Sbjct: 358 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 414

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  L       ++ +   +++IDT G    +  L   I  +         +AP
Sbjct: 415 PVHAVKDAGDLE---LALSELRNKHIVLIDTIGMSQRDRALSDQIAMLHGA------NAP 465

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              L +L+AT+  + L +V   +  A       G I+TK+D     GG++  V+ +K+P+
Sbjct: 466 VQRLLLLNATSHGDTLNEVVQAYRSAAEYPDLAGCILTKLDEATHLGGVLDTVIRYKLPI 525

Query: 287 YFLGVGEGIND 297
           +++  G+ + +
Sbjct: 526 HYVSTGQKVPE 536


>gi|262303767|gb|ACY44476.1| signal recognition particle [Argulus sp. Arg2]
          Length = 101

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66


>gi|262303799|gb|ACY44492.1| signal recognition particle [Euperipatoides rowelli]
 gi|262303839|gb|ACY44512.1| signal recognition particle [Peripatus sp. 'Pep']
          Length = 101

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V     PV F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATGSPVIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66


>gi|330720587|gb|EGG98854.1| Flagellar biosynthesis protein FlhF [gamma proteobacterium
           IMCC2047]
          Length = 482

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 20/193 (10%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           R  VI ++G  G GKTT I KL+ +  +     ++ L   D++R AA ++L+        
Sbjct: 261 RRGVIALLGATGAGKTTTIAKLAVRYALKFGPGQLALVTTDSYRLAAYEELRTLG--RIV 318

Query: 168 DFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           D    ++        Y +  +  A  K   +++IDTAG         AG  + ++ L+ L
Sbjct: 319 DVPVRQVDE------YNSLDEVLASLKHKSMVLIDTAG-------FHAGDKERMKQLEML 365

Query: 226 DPHAPH-SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           +        L VL +T+  N L+ +    A     G ++TK+D T   G ++ +VV + +
Sbjct: 366 ENSKVDIKKLLVLPSTSQSNVLKSMYELMATVSLQGCVLTKIDETNSLGEVLSLVVENTL 425

Query: 285 PVYFLGVGEGIND 297
           PV ++  G+ I D
Sbjct: 426 PVAYITNGQKIPD 438


>gi|289571108|ref|ZP_06451335.1| cell division protein ftsY [Mycobacterium tuberculosis T17]
 gi|289544862|gb|EFD48510.1| cell division protein ftsY [Mycobacterium tuberculosis T17]
          Length = 263

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 7/110 (6%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLM 97
           D+   +++ED L+ +D+G A    +V +L ++  + +V  +     VL DV  LI+++  
Sbjct: 151 DEDSWQDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDV--LINELQP 208

Query: 98  PLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            + +       +  P V+LVVGVNG GKTT +GKL++ +   G+   LA+
Sbjct: 209 GMDRSIRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVAGGVLAALAS 258


>gi|172059261|ref|YP_001806913.1| flagellar biosynthesis regulator FlhF [Burkholderia ambifaria
           MC40-6]
 gi|171991778|gb|ACB62697.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Burkholderia ambifaria MC40-6]
          Length = 588

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 18/191 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+        V
Sbjct: 358 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 414

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  L       ++ +   +++IDT G    +  L   I  +         +AP
Sbjct: 415 PVHAVKDAGDLE---LALSELRNKHIVLIDTIGMSQRDRALSDQIAMLHGA------NAP 465

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              L +L+AT+  + L +V   +  A       G I+TK+D     GG++  V+ +K+P+
Sbjct: 466 VQRLLLLNATSHGDTLNEVVQAYRSAAEYPDLAGCILTKLDEATHLGGVLDTVIRYKLPI 525

Query: 287 YFLGVGEGIND 297
           +++  G+ + +
Sbjct: 526 HYVSTGQKVPE 536


>gi|71280427|ref|YP_268259.1| flagellar biosynthesis regulator FlhF [Colwellia psychrerythraea
           34H]
 gi|71146167|gb|AAZ26640.1| flagellar biosynthetic protein FlhF [Colwellia psychrerythraea 34H]
          Length = 513

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 25/198 (12%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D  +R  V+ +VG  GVGKTT I KL+   S      +V L + DTFR A  +QL  +  
Sbjct: 291 DIINRGGVVALVGPTGVGKTTTIAKLAAGFSQVHGSDQVALISTDTFRIAGFEQLATY-- 348

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM----- 218
                 +  ++     + A +   Q  +KK  +++IDTAG    +  L   +  +     
Sbjct: 349 ---GKIIGCQVSLAKDSQALDILLQQYSKK-KLILIDTAGMGQRDMRLAEQLTALVSNAR 404

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +R+   L          VL A T Q  +++ V+ F  V   +G I TK+D +   G +I 
Sbjct: 405 VRIRNYL----------VLAANTQQGVMQENVDRFKKVP-LSGCIYTKLDESISIGEIIT 453

Query: 278 IVVTHKIPVYFLGVGEGI 295
             + + +P+ +L  G+ +
Sbjct: 454 TSIQNGLPIGYLTDGQRV 471


>gi|157813190|gb|ABV81340.1| putative signal recognition particle protein [Limulus polyphemus]
 gi|262303777|gb|ACY44481.1| signal recognition particle [Carcinoscorpius rotundicauda]
          Length = 101

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V     P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATHSPIIFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66


>gi|167587838|ref|ZP_02380226.1| flagellar biosynthesis regulator FlhF [Burkholderia ubonensis Bu]
          Length = 365

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 23/199 (11%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+      
Sbjct: 127 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG- 185

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V      DA  L       ++ +   +++IDT G    +      +   I +L     
Sbjct: 186 --VPVHAVKDAGDLQ---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLH--GA 234

Query: 228 HAPHSVLQVLDATTGQNALRQV-EMFHAVAGT--------TGLIMTKMDGTARGGGLIPI 278
           + P   L +L+AT+  + L +V + + + AG          G I+TK+D     GG++  
Sbjct: 235 NTPVQRLLLLNATSHGDTLNEVVQAYRSAAGHPDAASAELAGCILTKLDEATHLGGVLDT 294

Query: 279 VVTHKIPVYFLGVGEGIND 297
           V+ +K+PV+++  G+ + +
Sbjct: 295 VIRYKLPVHYVSTGQKVPE 313


>gi|313200587|ref|YP_004039245.1| GTP-binding signal recognition particle srp54 g- domain-containing
           protein [Methylovorus sp. MP688]
 gi|312439903|gb|ADQ84009.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methylovorus sp. MP688]
          Length = 451

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 110/255 (43%), Gaps = 21/255 (8%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           D V+    ++L+ +    A++++I E +   R + + +       V  ++ K L  +  P
Sbjct: 161 DPVKSNTLNMLLSAGFSAALSRQIAENMPDHRTSAEANTW-----VQSILEKNLQAI--P 213

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKI 160
              +  +R  V  ++G  GVGKTT   KL+ +  M     K+ L   D +R    +QL+I
Sbjct: 214 NEDEILNRGGVFALIGPTGVGKTTTTAKLAARFVMKHGPGKLGLITTDAYRIGGHEQLRI 273

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           +        V      D A L   A ++ + K    ++IDT G    + ++   I  +  
Sbjct: 274 YGKILG---VMVHAVKDEADLKI-ALEELKGKHT--ILIDTVGVSQKDRMVAEQIAMLSS 327

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
             +      P   L  L+AT     L  V   + V    G I+TK+D  A  G  + +++
Sbjct: 328 TRQ------PIKKLLCLNATNTGETLTDVVRAYKVKQLDGCIITKLDEAATIGSALDVII 381

Query: 281 THKIPVYFLGVGEGI 295
             K+ +Y++  G+ +
Sbjct: 382 REKLRLYYVANGQRV 396


>gi|292669762|ref|ZP_06603188.1| flagellar biosynthesis protein FlhF [Selenomonas noxia ATCC 43541]
 gi|292648559|gb|EFF66531.1| flagellar biosynthesis protein FlhF [Selenomonas noxia ATCC 43541]
          Length = 457

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 115/253 (45%), Gaps = 21/253 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           + D L R D    V +++ E+L  K    DV++  +    + ++   L  + K F     
Sbjct: 205 IRDALRRQD----VHEELCEDLSGKISITDVNLDSLDSRAAGVLAGYLTQVMK-FTDGLR 259

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS----DAGLKVMLAAGDTFRSAAIDQLKIWADR 164
             PH   VV   G         L+K  +    +  LK  L   DT+R +A++QLK +A+ 
Sbjct: 260 LSPHGSRVVAFIGTTGVGKTTTLAKIAAHFVLEQNLKGALITADTYRISAVEQLKKYAEI 319

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                +  E+   AA L  +A  + ++K  D +++DTAGR   N   M  + +++    R
Sbjct: 320 LG---LPVEVVYSAADL-RKAITRHRSK--DFVLVDTAGRSQYNEFQMDELKELLMAHPR 373

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           ++ H     L V   T  Q+A   ++ F +V     +I TK D T   G ++ ++   ++
Sbjct: 374 MEKH-----LVVSATTKEQDAAEIIDRF-SVCAPNRIIFTKTDETRSIGMVLNLLAQREL 427

Query: 285 PVYFLGVGEGIND 297
           P+ FL  G+ + D
Sbjct: 428 PLSFLSNGQSVPD 440


>gi|253998501|ref|YP_003050564.1| flagellar biosynthesis regulator FlhF [Methylovorus sp. SIP3-4]
 gi|253985180|gb|ACT50037.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methylovorus sp. SIP3-4]
          Length = 452

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 110/255 (43%), Gaps = 21/255 (8%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           D V+    ++L+ +    A++++I E +   R + + +       V  ++ K L  +  P
Sbjct: 162 DPVKSNTLNMLLSAGFSAALSRQIAENMPDHRTSAEANTW-----VQSILEKNLQAI--P 214

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKI 160
              +  +R  V  ++G  GVGKTT   KL+ +  M     K+ L   D +R    +QL+I
Sbjct: 215 NEDEILNRGGVFALIGPTGVGKTTTTAKLAARFVMKHGPGKLGLITTDAYRIGGHEQLRI 274

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           +        V      D A L   A ++ + K    ++IDT G    + ++   I  +  
Sbjct: 275 YGKILG---VMVHAVKDEADLKI-ALEELKGKHT--ILIDTVGVSQKDRMVAEQIAMLSS 328

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
             +      P   L  L+AT     L  V   + V    G I+TK+D  A  G  + +++
Sbjct: 329 TRQ------PIKKLLCLNATNTGETLTDVVRAYKVKQLDGCIITKLDEAATIGSALDVII 382

Query: 281 THKIPVYFLGVGEGI 295
             K+ +Y++  G+ +
Sbjct: 383 REKLRLYYVANGQRV 397


>gi|415431|gb|AAB27926.1| GTP-binding protein [Drosophila sp.]
          Length = 168

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 15/98 (15%)

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           +A +A EA K A   +VDV+++DTAGR+ +N  LM  + K+I+V      + P  VL V 
Sbjct: 71  SAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSLSKLIKV------NNPDLVLFVG 124

Query: 238 DATTGQNALRQVEMFH-AVAGTT--------GLIMTKM 266
           +A  G  A+ Q+  F+ ++AG +        G+++TK+
Sbjct: 125 EALVGNEAVDQLVKFNQSLAGYSSNENRHIDGIVLTKL 162


>gi|332533110|ref|ZP_08408979.1| flagellar biosynthesis protein FlhF [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037392|gb|EGI73846.1| flagellar biosynthesis protein FlhF [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 422

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 13/187 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT + KL+          KV L   DT+R  A +QL  +         
Sbjct: 206 VYALVGPTGVGKTTTVAKLAALGAQKYGADKVALITTDTYRIGAYEQLATYGRIIGCGVK 265

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +  ++ A + Y        +   +++IDTAG    +  L   +  ++R  +R+D    
Sbjct: 266 QVKDANELAEVLY------HLRNKRLVLIDTAGMSQRDLRLTEQLNTLMRN-QRVDIR-- 316

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            S L VL AT   N L++          +G I TK+D +   G +I I + +++P+ +L 
Sbjct: 317 -SYL-VLSATAQINVLQETVRHFKKVQLSGCIFTKLDESLSLGEIISIAIQNRLPIGYLT 374

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 375 NGQRVPE 381


>gi|262303817|gb|ACY44501.1| signal recognition particle [Limnadia lenticularis]
          Length = 101

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + PV F+G GE I+DLE F  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDLESFKTKPFVSKLLGLGD 66


>gi|262303755|gb|ACY44470.1| signal recognition particle [Acanthocyclops vernalis]
          Length = 101

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I++K+DG A+GGG +  V   + PV F+G GE I+D EPF  K F   + G  D
Sbjct: 12  VIISKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDFEPFKTKPFVQKLLGMGD 66


>gi|262303765|gb|ACY44475.1| signal recognition particle [Amblyomma sp. 'Amb2']
          Length = 101

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V     P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATHSPIIFIGTGEHIDDFEPFKVKPFISKLLGMGD 66


>gi|302037623|ref|YP_003797945.1| putative flagellar biosynthetic protein FlhF, GTP binding
           [Candidatus Nitrospira defluvii]
 gi|300605687|emb|CBK42020.1| putative Flagellar biosynthetic protein FlhF, GTP binding
           [Candidatus Nitrospira defluvii]
          Length = 427

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 15/187 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           + L VG +GVGKT+ I KL+ +      + V L   DT+R AA++ L+++A+    +   
Sbjct: 207 IALFVGPSGVGKTSTIAKLATQYGIVEQRSVALITMDTYRPAAVEHLRLYAEVLGIELSV 266

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +    +A A        AQA++ ++++IDT G      I      +  R L  L+   P 
Sbjct: 267 AASCEEARAAI------AQAREAELILIDTTGFNPYEPI----TAQRWRGL--LNGAYPM 314

Query: 232 SVLQVLDATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            V  VL A T   + +        V G   L+ TK+D TA  GG+        IP+ + G
Sbjct: 315 EVHLVLAAGTRVPDLVVSTSQCVDVPGLR-LLFTKLDETAGYGGIFEATHRTGIPLSYWG 373

Query: 291 VGEGIND 297
            G+ + D
Sbjct: 374 TGQRVPD 380


>gi|157813192|gb|ABV81341.1| putative signal recognition particle protein [Mesocyclops edax]
          Length = 101

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I++K+DG A+GGG +  V   + PV F+G GE I+D EPF  K F   + G  D
Sbjct: 12  VIISKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDFEPFKTKPFIQKLLGMGD 66


>gi|262303863|gb|ACY44524.1| signal recognition particle [Streptocephalus seali]
          Length = 101

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V +   P+ F+G GE I+D EPF ++ F   + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVASTNSPIIFIGTGEHIDDFEPFKSQPFIKKLLGLGD 66


>gi|77359756|ref|YP_339331.1| flagellar biosynthesis regulator FlhF [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874667|emb|CAI85888.1| putative Flagellar biosynthetic protein FlhF(Flagella associated
           GTP-binding protein) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 496

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 13/185 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT + KL+          KV L   DT+R  A +QL  +         
Sbjct: 280 VYALVGPTGVGKTTTVAKLAALGAQKYGADKVALITTDTYRIGAYEQLATYGRIIGCGVK 339

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +  ++ A + Y        +   +++IDTAG    +  L   +  ++R  +R+D    
Sbjct: 340 QVKDANELAEVLY------HLRNKRLVLIDTAGMSQRDLRLTEQLNTLMRN-QRVDIRN- 391

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                VL AT   N L++          +G I TK+D +   G +I I + +++P+ +L 
Sbjct: 392 ---YLVLSATAQINVLQETVRHFKKVQLSGCIFTKLDESLSLGEIISIAIQNRLPIGYLT 448

Query: 291 VGEGI 295
            G+ +
Sbjct: 449 NGQRV 453


>gi|262303785|gb|ACY44485.1| signal recognition particle [Daphnia magna]
          Length = 101

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + PV F+G GE I+DLE F  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDLESFKTKPFISKLLGLGD 66


>gi|307731374|ref|YP_003908598.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1003]
 gi|307585909|gb|ADN59307.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1003]
          Length = 655

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 18/191 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+        V
Sbjct: 425 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 481

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 D+A L       ++ +   +++IDT G    + ++   I  + R  +      P
Sbjct: 482 SVHAVKDSADLQ---LALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLSRAGQ------P 532

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              L +L+AT+  + L +V   +          G I+TK+D     GG++  V+ +K+PV
Sbjct: 533 VQRLLLLNATSHGDTLNEVVQAYQRGPDQQPLAGCILTKLDEATNLGGVLDTVIRYKLPV 592

Query: 287 YFLGVGEGIND 297
           +++  G+ + +
Sbjct: 593 HYVSTGQKVPE 603


>gi|323527724|ref|YP_004229877.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1001]
 gi|323384726|gb|ADX56817.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1001]
          Length = 731

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 18/191 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+        V
Sbjct: 501 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 557

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 D+A L       ++ +   +++IDT G    + ++   I  + R  +      P
Sbjct: 558 SVHAVKDSADLQ---LALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLSRAGQ------P 608

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              L +L+AT+  + L +V   +          G I+TK+D     GG++  V+ +K+PV
Sbjct: 609 VQRLLLLNATSHGDTLNEVVQAYQRGPDQQPLAGCILTKLDEATNLGGVLDTVIRYKLPV 668

Query: 287 YFLGVGEGIND 297
           +++  G+ + +
Sbjct: 669 HYVSTGQKVPE 679


>gi|311105928|ref|YP_003978781.1| flagellar biosynthesis protein FlhF [Achromobacter xylosoxidans A8]
 gi|310760617|gb|ADP16066.1| flagellar biosynthesis protein FlhF [Achromobacter xylosoxidans A8]
          Length = 910

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 33/198 (16%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT + KL+ +    +   +V +   D FR  A++QL+I+        V
Sbjct: 303 VYALVGPTGVGKTTTLAKLAARCVAREGREQVAMLTTDNFRIGALEQLQIYGRLMG---V 359

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMAGIGKMIRVLKR 224
            +    DA  L      +  ++K+  ++IDT G      ++   + ++   GK +R L  
Sbjct: 360 PAHSVRDAGEL-RRILAELGSRKI--VLIDTTGISQRDRQVAEQAAMLCNAGKPVRRLL- 415

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG-----TTGLIMTKMDGTARGGGLIPIV 279
                      VL+A +  + L +V   HA          G I+TK+D   R G  +   
Sbjct: 416 -----------VLNAASQGDTLDEVA--HAYRNGVGEDVAGCIITKLDEATRLGAALDTA 462

Query: 280 VTHKIPVYFLGVGEGIND 297
           + H++P++++ VG+ + +
Sbjct: 463 IRHRLPIHYMSVGQKVPE 480


>gi|254458953|ref|ZP_05072376.1| GTP-binding signal recognition particle SRP54, G-domain
           [Campylobacterales bacterium GD 1]
 gi|207084224|gb|EDZ61513.1| GTP-binding signal recognition particle SRP54, G-domain
           [Campylobacterales bacterium GD 1]
          Length = 423

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 15/205 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           VI++VG  GVGKTT I KL+ + S       KV L   DT+R  A++QL  +A R     
Sbjct: 222 VIMLVGPTGVGKTTSIAKLAARYSYLMQKRYKVGLVVLDTYRIGAVEQLMQYA-RMMKLG 280

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           + + +     A A  + +       D ++IDT G   ++      I K+   L+  D   
Sbjct: 281 IETVVDPPEFATALNSLRYC-----DYILIDTMG---SSPYDKNKIEKIYECLEANDTEF 332

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              V+ V+ ++     L+      +      ++ TK+D T   G +  +    K P+ + 
Sbjct: 333 NVDVVLVMPSSIKYEDLKATYDNFSTLNVDTVMFTKLDETMGFGNIFSLAYETKRPISYF 392

Query: 290 GVGEGINDLEPFVAKDFSAVITGCL 314
            VG+ + +     + DF   +  CL
Sbjct: 393 SVGQEVPEDLVCASSDF---LVECL 414


>gi|262303813|gb|ACY44499.1| signal recognition particle [Metajapyx subterraneus]
          Length = 101

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + PV F+G GE I+DLE F  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDLEAFKTKPFVSKLLGMGD 66


>gi|302851237|ref|XP_002957143.1| hypothetical protein VOLCADRAFT_98179 [Volvox carteri f.
           nagariensis]
 gi|300257550|gb|EFJ41797.1| hypothetical protein VOLCADRAFT_98179 [Volvox carteri f.
           nagariensis]
          Length = 510

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 12/120 (10%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-------SELIHKMLMPL 99
           +E+   L+ +D+ + V ++ V+++  +     V ++ V  DV       +ELI  M   +
Sbjct: 113 KEVRRALLEADVSLPVVRRFVKKVEERALGTKV-IEGVTPDVQFIKVVSNELIELMGGGV 171

Query: 100 -SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
            +K     F   P +IL+ G+ GVGKTT  GKL+  +  A    +L A D +R AAIDQL
Sbjct: 172 GAKDLEPGF---PQIILMAGLQGVGKTTAAGKLALYLKKAKKSCLLVATDVYRPAAIDQL 228


>gi|330836611|ref|YP_004411252.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Spirochaeta coccoides DSM 17374]
 gi|329748514|gb|AEC01870.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Spirochaeta coccoides DSM 17374]
          Length = 396

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 17/200 (8%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSK-----KMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           +H  H  +++G  GVGKTT I KL+         +    V +   D++R  A +Q+  +A
Sbjct: 178 THPAHNYVLLGPTGVGKTTTIAKLAAIFGVIPPPEERRSVAIITLDSYRVGAREQIFAFA 237

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           D          + +  A    E F    + +  D+++IDT GR   ++ L   +  ++ +
Sbjct: 238 D-------ALNLPAHQAHDENELFSVLDSLEGTDLVLIDTIGRSPRDNELSIKLTSLLSI 290

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                      +   +     ++A+RQ   F       GLI+TK+D T   G  I +   
Sbjct: 291 PTSESTAFYLCIGASMKKADIEDAVRQTAPF----SLRGLIITKLDETRTVGNFISLAAE 346

Query: 282 HKIPVYFLGVGEGINDLEPF 301
             +P+ F+  G+ I+D+ P 
Sbjct: 347 KSLPLTFVTDGQKISDIHPM 366


>gi|262303827|gb|ACY44506.1| signal recognition particle [Hexagenia limbata]
          Length = 101

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + PV F+G GE I+DLE F  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDLESFKTKPFISKLLGMGD 66


>gi|170694381|ref|ZP_02885535.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia graminis C4D1M]
 gi|170140804|gb|EDT08978.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia graminis C4D1M]
          Length = 742

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 18/191 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+        V
Sbjct: 512 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 568

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 D+A L       ++ +   +++IDT G    + ++   I  + R  +      P
Sbjct: 569 SVHAVKDSADLQ---LALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLSRAGQ------P 619

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              L +L+AT+  + L +V   +          G I+TK+D     GG++  V+ +K+PV
Sbjct: 620 VQRLLLLNATSHGDTLNEVVQAYQRGPDQQPLAGCILTKLDEATNLGGVLDTVIRYKLPV 679

Query: 287 YFLGVGEGIND 297
           +++  G+ + +
Sbjct: 680 HYVSTGQKVPE 690


>gi|330502781|ref|YP_004379650.1| flagellar biosynthesis regulator FlhF [Pseudomonas mendocina NK-01]
 gi|328917067|gb|AEB57898.1| flagellar biosynthesis regulator FlhF [Pseudomonas mendocina NK-01]
          Length = 436

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 21/213 (9%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLA 145
           ++ L H +  P  +P          VI +VG  G+GKTT + KL+ +  +     +V L 
Sbjct: 198 LAHLAHAIKTPKVEPLEEG-----GVIALVGPAGMGKTTTLAKLAARYVLKYGAQQVALV 252

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           + D+FR  A +QLK             + G S   ALA  A K+       V+++DTAG 
Sbjct: 253 SMDSFRIGAQEQLKTLGRILGVSVTQIDPGQSLLQALAPLAKKR-------VVLVDTAGL 305

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
             N+  L   +  +     +   +       VL AT+    L+     +   G  G I+T
Sbjct: 306 PGNDPALRLQLESLASARIKAKNYL------VLAATSQSQVLKAAYHSYKRCGLAGCILT 359

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           K+D  A  G ++ + +  ++PV ++  G  I D
Sbjct: 360 KLDEAASLGEVLGLAIGQQLPVAYVTDGPRIPD 392


>gi|328479898|gb|EGF48969.1| signal recognition particle-docking protein FtsY [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 67

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           AI QL+ W  R     V +  G D AA+ ++  ++A+ +  DV+++DTAGRL N   LM 
Sbjct: 1   AIQQLQEWGRRVEVPVVATNPGGDPAAVVFDGVRRAKDEGYDVVLVDTAGRLQNKVNLMN 60

Query: 214 GIGKM 218
            + K+
Sbjct: 61  ELNKL 65


>gi|241628780|ref|XP_002410011.1| signal recognition particle 54 kD protein, putative [Ixodes
           scapularis]
 gi|215503285|gb|EEC12779.1| signal recognition particle 54 kD protein, putative [Ixodes
           scapularis]
          Length = 196

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 17/162 (10%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           RK+T    S S          I ++ + D + +E+   L+ +DI + + +++ E +   R
Sbjct: 42  RKITNALRSLS-------NATIINKEVLDSMLKEICTALLEADINIKLVKQLRENV---R 91

Query: 75  YAKDVSVQRVLYDVSELIH----KMLMPLSKP--FNWDFSH-RPHVILVVGVNGVGKTTV 127
            A D+       +   +I     K L+ L  P    W  +  + ++I+ VG+ G GKTT 
Sbjct: 92  SAIDIDEMGAGLNKRRMIQSAVFKELIKLVDPGVKAWQPTKGKNNIIMFVGLQGSGKTTT 151

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
             KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 152 CTKLAYHYLKKGWKTCLVCADTFRAGAFDQLKQNATKARIPF 193


>gi|171320643|ref|ZP_02909662.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia ambifaria MEX-5]
 gi|171094129|gb|EDT39217.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia ambifaria MEX-5]
          Length = 379

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 23/196 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+        V
Sbjct: 144 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V 200

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  L       ++ +   +++IDT G    +  L   I  +         +AP
Sbjct: 201 PVHAVKDAGDLE---LALSELRNKHIVLIDTIGMSQRDRALSDQIAMLHGA------NAP 251

Query: 231 HSVLQVLDATTGQNALRQVEMFH---------AVAGTTGLIMTKMDGTARGGGLIPIVVT 281
              L +L+AT+  + L +V   +         A     G I+TK+D     GG++  V+ 
Sbjct: 252 VQRLLLLNATSHGDTLNEVVQAYRSAAEYPRAATPDLAGCILTKLDEATHLGGVLDTVIR 311

Query: 282 HKIPVYFLGVGEGIND 297
           +K+P++++  G+ + +
Sbjct: 312 YKLPIHYVSTGQKVPE 327


>gi|78776902|ref|YP_393217.1| flagellar biosynthesis regulator FlhF [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497442|gb|ABB43982.1| GTP-binding signal recognition particle SRP54, G-domain
           [Sulfurimonas denitrificans DSM 1251]
          Length = 362

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           VI++VG  GVGKTT + KL+ + S       KV L   DT+R  A++QL  +A       
Sbjct: 161 VIMLVGPTGVGKTTSVAKLAARYSFLMQKKYKVGLIVLDTYRIGAVEQLMQYARMMKLAI 220

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 SD A+ A ++ K       D ++IDT G   ++      I K+   L   D   
Sbjct: 221 ETVVDPSDFAS-ALDSLKYC-----DYILIDTMG---SSPYDRNKIEKIYECLDGNDTKY 271

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              V+ V+ ++     L+      +      L+ TK+D T   G +  +    K P+ + 
Sbjct: 272 NIDVVLVMPSSIKYEDLKATYENFSSLNVDTLMFTKLDETRGFGNIFSLAYEIKKPISYF 331

Query: 290 GVGEGI 295
            VG+ +
Sbjct: 332 SVGQEV 337


>gi|298528404|ref|ZP_07015808.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512056|gb|EFI35958.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 367

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 25/199 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +  ++G +GVGKTT + +L+ +  +   G+K+ L   DT  +     LK +AD +   F+
Sbjct: 166 IHCLMGPSGVGKTTTVLRLALESRNIKPGMKICLVNNDTQHAGGRLFLKHYADLSGFSFM 225

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR-LHNN---SILMAGIGKMIRVLKRLD 226
             EI S   A   ++ KQA+ +K D++ +DT G   H+N   S+ M  +  + R L    
Sbjct: 226 --EIKS---AQDLKSLKQAR-EKFDLVFMDTPGLGPHDNVQDSLWMKHMKNIQRHL---- 275

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL        L      ++      LI TK+D     G L+       +P 
Sbjct: 276 ---------VLSPVYAHEQLDNYLQKYSRDDLNSLIWTKLDEACSYGTLVNASWKSALPA 326

Query: 287 YFLGVGEGINDLEPFVAKD 305
            +LG G+G+       ++D
Sbjct: 327 SYLGFGKGLRHCSTSASRD 345


>gi|186477708|ref|YP_001859178.1| flagellar biosynthesis regulator FlhF [Burkholderia phymatum
           STM815]
 gi|184194167|gb|ACC72132.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia phymatum STM815]
          Length = 644

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 36/200 (18%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIW--------- 161
           V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+         
Sbjct: 414 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVSVH 473

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A + SAD            LA    +        +++IDT G    + ++   I  + R 
Sbjct: 474 AVKDSADLT----------LALSELRNKH-----IVLIDTIGMSQRDRLVSDQIAMLCRA 518

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIP 277
            +      P   L +L+AT+  + L +V   +  A       G I+TK+D     G ++ 
Sbjct: 519 GQ------PVQRLLLLNATSHGDTLNEVVQAYQNAPDQQPLAGCILTKLDEATNLGSVLD 572

Query: 278 IVVTHKIPVYFLGVGEGIND 297
            V+ +K+PV++   G+ + +
Sbjct: 573 TVIRYKLPVHYASTGQKVPE 592


>gi|262303855|gb|ACY44520.1| signal recognition particle [Scutigerella sp. 'Scu3']
          Length = 101

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE  +D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHTDDFEPFKVKPFVSKLLGMGD 66


>gi|153952395|ref|YP_001397329.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939841|gb|ABS44582.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 481

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 14/190 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           ++++VG  GVGKTT + KL+ + +  D   K  +   DT+R  A++QL  +A       +
Sbjct: 283 IMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII 342

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S    D      EA K       +V+++DT G   N+    + + K    L  +  +A 
Sbjct: 343 DSIEPKDLD----EAIKSLN--NCEVILVDTIG---NSQYDQSKLAKTKEFL--IHSNAE 391

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V  V+ A      L +     +      LI+TK D T   G +  ++    IP+ F  
Sbjct: 392 IDVNLVVSANIKHEDLMENYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLSFFS 451

Query: 291 VGEGI-NDLE 299
            G+ + +DLE
Sbjct: 452 TGQEVPDDLE 461


>gi|157813194|gb|ABV81342.1| putative signal recognition particle protein [Mastigoproctus
           giganteus]
          Length = 101

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF    F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVNPFVSKLLGMGD 66


>gi|42524689|ref|NP_970069.1| flagellar biosynthesis protein [Bdellovibrio bacteriovorus HD100]
 gi|39576899|emb|CAE78128.1| flagellar biosynthesis protein [Bdellovibrio bacteriovorus HD100]
          Length = 467

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 29/196 (14%)

Query: 117 VGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VG  G GKT+ + K++ +M    G K+ L   DTF+  A DQ+KI+A   +  F      
Sbjct: 269 VGPAGSGKTSALIKMASQMVVREGKKIALFTTDTFKVGAADQMKIYAQILNVPFSVIRTQ 328

Query: 176 SDAAALA-YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           +D   L  Y A        VD +++D  G       L     + I++LK L P  P ++ 
Sbjct: 329 NDWTNLMRYLA-------NVDCVLVDYTG-------LSLKSNEEIQMLKSLLP--PAALN 372

Query: 235 QVLDATTGQNA----LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +  T   NA      ++   ++V G   +I T +D + + G +   +    +P++  G
Sbjct: 373 PNIHLTLSTNAKDGDATELGRRYSVLGYKDVIFTSLDESTQHGTIYNFMKRFDVPLHSFG 432

Query: 291 VGEGINDLEPFVAKDF 306
           +G       P V +DF
Sbjct: 433 IG-------PRVPEDF 441


>gi|90021811|ref|YP_527638.1| flagellar biosynthetic protein FlhF [Saccharophagus degradans 2-40]
 gi|89951411|gb|ABD81426.1| GTP-binding signal recognition particle SRP54, G-domain
           [Saccharophagus degradans 2-40]
          Length = 527

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 31/199 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V   VG  GVGKTT I KL+ +  + +   KV +   DT+R  A DQL+          +
Sbjct: 319 VFAFVGPTGVGKTTTIAKLAARFVLENGPGKVAIITTDTYRVGAHDQLR---------SL 369

Query: 171 CSEIGSDAAALAYE---AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM--IRVLKRL 225
              +G    AL  +       A  K+  ++++DTAG    +++L   + ++     ++R+
Sbjct: 370 GRILGVPVRALDKDHSLPVLLASLKQFPLILVDTAGFRQGDALLKEQLRQLDTCPTMRRI 429

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL---IMTKMDGTARGGGLIPIVVTH 282
              A +S LQ L A+            HA AG  G+   ++TK+D +   G  + ++V  
Sbjct: 430 LVMACNSQLQTLKASV-----------HAYAGMRGVDACVITKVDESLSMGEALSVLVEK 478

Query: 283 KIPVYFLGVGEGI-NDLEP 300
            +PV +   G+ I  D+ P
Sbjct: 479 SVPVAYTTDGQEIPKDIAP 497


>gi|167946142|ref|ZP_02533216.1| signal recognition particle protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 222

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%)

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG+I+TK DG ARGG  + I      P+ FLGVGE ++ LEPF     ++ I G  D
Sbjct: 4   TGVILTKTDGDARGGAALSIRHITGKPIKFLGVGEKVDALEPFHPDRVASRILGMGD 60


>gi|325302918|tpg|DAA34489.1| TPA_inf: signal recognition particle subunit Srp54 [Amblyomma
           variegatum]
          Length = 160

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 17/152 (11%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-- 72
           RK+T    S S          I ++ + D + +E+   L+ +DI + + +++ E + +  
Sbjct: 15  RKITNALRSLS-------NATIINKEVLDSMLKEICTALLEADINIKLVKQLRENVRSVI 67

Query: 73  --KRYAKDVSVQRVLYDVSELIHKMLMPLSKP--FNWDFSH-RPHVILVVGVNGVGKTTV 127
                A  ++ +R+   +   + K L+ L  P    W  +  + +VI+ VG+ G GKTT 
Sbjct: 68  DIDEMAAGLNKRRM---IQSAVFKELIKLVDPGVKAWQPTKGKNNVIMFVGLQGSGKTTT 124

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
             KL+      G K  L   DTFR+ A DQLK
Sbjct: 125 CTKLAYHYLKKGWKTCLVCADTFRAGAFDQLK 156


>gi|262303803|gb|ACY44494.1| signal recognition particle [Hanseniella sp. 'Han2']
          Length = 101

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE  +D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHTDDFEPFKVKPFISKLLGMGD 66


>gi|289759043|ref|ZP_06518421.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289714607|gb|EFD78619.1| predicted protein [Mycobacterium tuberculosis T85]
          Length = 250

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 7/101 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLMPLSKP 102
           +++ED L+ +D+G A    +V +L ++  + +V  +     VL DV  LI+++   + + 
Sbjct: 152 QDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDV--LINELQPGMDRS 209

Query: 103 FN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
                 +  P V+LVVGVNG GKTT +GKL++ +   G +V
Sbjct: 210 IRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRV 250


>gi|262303845|gb|ACY44515.1| signal recognition particle [Peripatoides novaezealandiae]
          Length = 101

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +I+TK+DG A+GGG +  V     PV F+G GE I+D EPF  K F
Sbjct: 12  VIVTKLDGLAKGGGALSAVAATGSPVIFIGTGEHIDDFEPFKVKPF 57


>gi|215447185|ref|ZP_03433937.1| cell division protein ftsY [Mycobacterium tuberculosis T85]
          Length = 254

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 7/106 (6%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR----VLYDVSELIHKMLM 97
           D+   +++ED L+ +D+G A    +V +L ++  + +V  +     VL DV  LI+++  
Sbjct: 151 DEDSWQDVEDTLLVADLGPAATASVVSQLRSRLASGNVRTEADARAVLRDV--LINELQP 208

Query: 98  PLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
            + +       +  P V+LVVGVNG GKTT +GKL++ +   G +V
Sbjct: 209 GMDRSIRALPHAGHPSVLLVVGVNGTGKTTTVGKLARVLVADGRRV 254


>gi|262303795|gb|ACY44490.1| signal recognition particle [Ephemerella inconstans]
          Length = 101

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + PV ++G GE I+DLE F  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATQSPVIYIGTGEHIDDLESFKTKPFISKLLGMGD 66


>gi|262303843|gb|ACY44514.1| signal recognition particle [Phrynus marginemaculatus]
          Length = 101

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+D  A+GGG +  V   + P+ F+G GE I+D EPF  K F + + G  D
Sbjct: 12  VIVTKLDSHAKGGGALSAVAATQSPITFIGTGEHIDDFEPFKVKPFVSKLLGMGD 66


>gi|262303821|gb|ACY44503.1| signal recognition particle [Leiobunum verrucosum]
          Length = 101

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V     P+ F+G GE ++D EPF  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATCSPIIFIGTGEHVDDFEPFKVKPFVSKLLGMGD 66


>gi|119470001|ref|ZP_01612806.1| flagellar biosynthesis regulator FlhF [Alteromonadales bacterium
           TW-7]
 gi|119446711|gb|EAW27984.1| flagellar biosynthesis regulator FlhF [Alteromonadales bacterium
           TW-7]
          Length = 491

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 13/185 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT + KL+          KV L   DT+R  A +QL  +         
Sbjct: 275 VYALVGPTGVGKTTTVAKLAALGAQKYGADKVALITTDTYRIGAYEQLATYGRIIGCGVK 334

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +  ++ A + Y        +   +++IDTAG    +  L   +  ++R  +R+D    
Sbjct: 335 QVKDANELAEVLY------HLRNKRLVLIDTAGMSQRDLRLTEQLNTLMRN-QRVDIR-- 385

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            S L VL AT+  + L++          +G I TK+D +   G +I I + +++P+ +L 
Sbjct: 386 -SYL-VLSATSQIHVLQETVRHFKKVQLSGCIFTKLDESLSLGEIISIAIQNRLPIGYLT 443

Query: 291 VGEGI 295
            G+ +
Sbjct: 444 NGQRV 448


>gi|207109480|ref|ZP_03243642.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 185

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 23/178 (12%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            +  ++++VG  GVGKTT + KL+ + S       KV +   D +R  A++QL  +A++ 
Sbjct: 20  RQKRILMLVGPTGVGKTTTLAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKM 79

Query: 166 ----SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                A     +   +  AL Y           D +++DT G    +   +AG+ + I  
Sbjct: 80  KMSIEAVIDIKDFAKEIEALEY----------CDFILVDTTGHSQYDKEKIAGLKEFI-- 127

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
               D      V  VL  TT    ++ +     V G   LI TK+D +   G L  +V
Sbjct: 128 ----DGGYNIDVSLVLSVTTKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLV 181


>gi|300694353|ref|YP_003750326.1| flagellar biosynthetic protein flhf [Ralstonia solanacearum PSI07]
 gi|299076390|emb|CBJ35706.1| putative flagellar biosynthetic protein flhF [Ralstonia
           solanacearum PSI07]
          Length = 607

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 14/187 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  +     +V L + D++R    +QL+I+        V
Sbjct: 381 VFALMGPTGVGKTTTTAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILG---V 437

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  L+         ++  V++IDT G    +      + + + +L  + P   
Sbjct: 438 TVHAVKDAQDLS---LALGDLREKHVVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIK 490

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L +L+AT+    L +V   +  A   G I+TK+D  A  G  + +++ H++P++++ 
Sbjct: 491 R--LLLLNATSNGKTLDEVVSAYRDANLAGCILTKIDEAASVGHAMDVMIRHRLPLHYVS 548

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 549 YGQRVPE 555


>gi|90411038|ref|ZP_01219052.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
 gi|90328251|gb|EAS44562.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
          Length = 586

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 29/193 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT I KL+ +  M     ++ L   DT+R  A +QL  +         
Sbjct: 368 VVALLGPTGVGKTTTIAKLAARAAMDFGADEIALVTTDTYRIGAHEQLATYG----RIMG 423

Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVL 222
           C   +  DA  LA +   Q + ++  ++++DTAG      RL      LM   G  IR  
Sbjct: 424 CPVRVAKDAEELA-DILHQLRHRR--LVLLDTAGMGQRDIRLSEQLDTLMQNSGAHIRSF 480

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             L   A   VLQ             +E F  +   +G ++TK+D +   G ++ + + +
Sbjct: 481 LVLPSTAQRRVLQET-----------IEHFRRIP-LSGCVLTKLDESLSLGEVMCVTIQN 528

Query: 283 KIPVYFLGVGEGI 295
            +P+ +L  G+ +
Sbjct: 529 ALPIAYLADGQRV 541


>gi|117926319|ref|YP_866936.1| GTP-binding signal recognition particle [Magnetococcus sp. MC-1]
 gi|117610075|gb|ABK45530.1| GTP-binding signal recognition particle SRP54, G- domain
           [Magnetococcus sp. MC-1]
          Length = 452

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 18/190 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG----DTFRSAAIDQLKIWADRTSA 167
            VI++VG  GVGKTT + K++   +D  L    + G    DTFR  A+ QL+ +A     
Sbjct: 251 RVIVLVGPTGVGKTTTLAKIA---ADLLLNRRRSVGMITLDTFRVGAVAQLETYAKLLQV 307

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V +   S+  A  +         + D +++DT G    N   +   G ++ V+     
Sbjct: 308 RLVVARSLSEVKAGMH------ALNRCDYILVDTVGSSPYNRRQVNSTGSLLPVMGE--- 358

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
                 L  + A   +   + V    +    TGLI TK+D T   G L+ + +  ++P+ 
Sbjct: 359 --DRETLLCMAANVRETEQQAVFRRFSTLNPTGLIFTKLDETVTFGNLLNVGLRARLPLT 416

Query: 288 FLGVGEGIND 297
               G+ + +
Sbjct: 417 MYADGQRVPE 426


>gi|281207982|gb|EFA82160.1| ARF/SAR superfamily protein [Polysphondylium pallidum PN500]
          Length = 547

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 32/175 (18%)

Query: 44  GVREELEDLLIRSDIGVAV------------AQKIVEELLTKRYAKDVSVQRVLYDVSEL 91
           G++E L  L +++D G+AV            A+ +   L  KR    V V+      + L
Sbjct: 243 GMKEGLWSLFVQNDFGIAVSDLTTMVRLNSGARSLYANLYFKRRNSIVPVR----SPNPL 298

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           I   L P+SK     FS + + IL+ G++GVGKTT++ K              A G+  R
Sbjct: 299 IRFFLKPISK-LPSLFSRKEYKILMYGLDGVGKTTLLYK-------------FARGEFVR 344

Query: 152 SAAIDQLKIW-ADRTSADFVCSEIGSDAAALAYEAFKQA-QAKKVDVLIIDTAGR 204
           +   +   +   +  S DF+C +IG + +      +    Q  +  + IID+  R
Sbjct: 345 TLPTNGYNVEVVEYKSCDFICWDIGYNTSKPVVPVWHHYIQDTQALIFIIDSTDR 399


>gi|94500296|ref|ZP_01306829.1| flagellar biosynthesis regulator FlhF [Oceanobacter sp. RED65]
 gi|94427595|gb|EAT12572.1| flagellar biosynthesis regulator FlhF [Oceanobacter sp. RED65]
          Length = 481

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 34/197 (17%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIW--------- 161
           V  +VG  G GKTT I K++ +  +      + L   D +R AA DQLK           
Sbjct: 272 VYAMVGPTGAGKTTTIAKMAVRFTLEHENASIGLVTMDNYRLAAHDQLKTLGQILGVPVQ 331

Query: 162 -ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            AD+      C +  SD                 D+++IDTAG    + +L   + ++  
Sbjct: 332 VADQEHTLSKCLDELSD----------------CDLVLIDTAGLTPQHPMLNYQLEQLAS 375

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           +  R+     H++L  L AT+    LR+V   +  AG  G ++TK+D  +  G  +  ++
Sbjct: 376 LRGRV-----HTLL-TLPATSTSRVLRKVYHNYKAAGIGGCVLTKLDEASSLGDALSALL 429

Query: 281 THKIPVYFLGVGEGIND 297
              + + +   G+ I D
Sbjct: 430 ESGLDLSYATDGQRIPD 446


>gi|46912556|emb|CAG19348.1| hypothetical flagellar biosynthesis protein FlhF [Photobacterium
           profundum SS9]
          Length = 570

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 29/193 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT I KL+ +  M     ++ L   DT+R  A +QL  +         
Sbjct: 352 VVALLGPTGVGKTTTIAKLAARAAMDFGADEIALVTTDTYRIGAHEQLATYG----RILG 407

Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVL 222
           C   +  DA  LA +   Q + ++  ++++DTAG      RL      LM   G  IR  
Sbjct: 408 CPVRVAKDAEELA-DILHQLRHRR--LVLLDTAGMGQRDIRLSEQLDTLMQNSGAHIRSF 464

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             L   A   VLQ             +E F  +   +G ++TK+D +   G ++ + + +
Sbjct: 465 LVLPSTAQRRVLQ-----------ETIEHFRRIP-LSGCVLTKLDESLSLGEVMCVTIQN 512

Query: 283 KIPVYFLGVGEGI 295
            +P+ +L  G+ +
Sbjct: 513 ALPIAYLADGQRV 525


>gi|161936323|ref|YP_129150.2| flagellar biosynthesis regulator FlhF [Photobacterium profundum
           SS9]
          Length = 580

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 29/193 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT I KL+ +  M     ++ L   DT+R  A +QL  +         
Sbjct: 362 VVALLGPTGVGKTTTIAKLAARAAMDFGADEIALVTTDTYRIGAHEQLATYG----RILG 417

Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNN-SILMAGIGKMIRVL 222
           C   +  DA  LA +   Q + ++  ++++DTAG      RL      LM   G  IR  
Sbjct: 418 CPVRVAKDAEELA-DILHQLRHRR--LVLLDTAGMGQRDIRLSEQLDTLMQNSGAHIRSF 474

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             L   A   VLQ             +E F  +   +G ++TK+D +   G ++ + + +
Sbjct: 475 LVLPSTAQRRVLQ-----------ETIEHFRRIP-LSGCVLTKLDESLSLGEVMCVTIQN 522

Query: 283 KIPVYFLGVGEGI 295
            +P+ +L  G+ +
Sbjct: 523 ALPIAYLADGQRV 535


>gi|226944864|ref|YP_002799937.1| flagellar biosynthesis protein [Azotobacter vinelandii DJ]
 gi|226719791|gb|ACO78962.1| flagellar biosynthesis protein [Azotobacter vinelandii DJ]
          Length = 758

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 20/193 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  GVGKTT   KL+ +  M     +V L + D+FR  A +QL+I+     A  +
Sbjct: 192 VIALVGPTGVGKTTTAAKLAARYVMRHGASQVALISTDSFRIGAHEQLRIY-----ARLL 246

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI------GKMIRVLKR 224
             E+ + AA    E      A K  ++IIDT G    +  L+  I      G+ +R++  
Sbjct: 247 GVEVHTLAAVAPLEPLLAGLADK-RLVIIDTVGMSQRDRRLLTQINQLGAAGRPVRLMLL 305

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           L+       L+ +  T       Q     A A     I++K D  AR G ++ I++ H +
Sbjct: 306 LNAACHGDTLEEVVGTY------QRAALAAGARLRDCIVSKCDEAARLGPVLDILMRHGL 359

Query: 285 PVYFLGVGEGIND 297
            + +L  G+ + +
Sbjct: 360 RLNYLTSGQQVPE 372


>gi|203284191|ref|YP_002221931.1| flagellar-associated GTP-binding protein [Borrelia duttonii Ly]
 gi|203287730|ref|YP_002222745.1| flagellar-associated GTP-binding protein [Borrelia recurrentis A1]
 gi|201083634|gb|ACH93225.1| flagellar-associated GTP-binding protein [Borrelia duttonii Ly]
 gi|201084950|gb|ACH94524.1| flagellar-associated GTP-binding protein [Borrelia recurrentis A1]
          Length = 393

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 29/195 (14%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSK----KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           +  + ++VG  GVGKTT I KL+        D  L + +   D +R  A  Q++ + D  
Sbjct: 178 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKNLNIKIITIDNYRIGAKKQIQTYGDI- 236

Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                   +G    A+  E+FK       Q+K  D+++IDT G+   + + +A + +++ 
Sbjct: 237 --------MGIPVKAI--ESFKDLKEEITQSKDFDLVLIDTIGKSPKDFMKLAEMKELLN 286

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278
              R D     +V     +TT  + ++  E+FH  +      +I TK+D T   G LI +
Sbjct: 287 ACGR-DAEFHLAV----SSTTKTSDIK--EIFHQFSPFSYKTVIFTKLDETTCVGNLISL 339

Query: 279 VVTHKIPVYFLGVGE 293
           +   +  V ++  G+
Sbjct: 340 IHEMRKEVSYVTDGQ 354


>gi|290559167|gb|EFD92526.1| signal recognition particle GTPase SRP54 [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 107

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   + V D+ TG + ++Q E+F    G    I++K D   +GG ++ I    K P+ FL
Sbjct: 24  PDLTIFVGDSLTGNDVVKQAEVFDKEIGIDVNILSKTDVDKKGGAVLSISYVTKKPILFL 83

Query: 290 GVGEGINDLEPF 301
           G G+   DL PF
Sbjct: 84  GTGQSYTDLIPF 95


>gi|262303805|gb|ACY44495.1| signal recognition particle [Hadrurus arizonensis]
 gi|262303807|gb|ACY44496.1| signal recognition particle [Heterometrus spinifer]
          Length = 101

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+D  A+GGG +  V   + P+ F+G GE ++D EPF  K F + + G  D
Sbjct: 12  VIVTKLDSHAKGGGALSAVAATQSPIIFIGTGEHVDDFEPFKVKPFVSKLLGMGD 66


>gi|313895912|ref|ZP_07829466.1| flagellar biosynthesis protein FlhF [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975337|gb|EFR40798.1| flagellar biosynthesis protein FlhF [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 472

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 21/253 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF- 107
           + D L R D    V +++ EEL  K    D+++  +     E++   L  + K F     
Sbjct: 220 IRDALKRQD----VRKELREELAAKVPVADINLDSLSPRAKEVLAGYLSQVMK-FTDGLR 274

Query: 108 --SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164
             +H   V+  +G  GVGKTT + K++     +  LK  L   DT+R +A++QLK +A+ 
Sbjct: 275 LGAHGSRVVAFIGTTGVGKTTTLAKVAAHFVLEQNLKGALITADTYRISAVEQLKKYAEI 334

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                +  E+   AA L  +A  + ++K  D +++DTAGR   N   M  + +++    R
Sbjct: 335 LG---LPVEVVYSAADLK-KAIARHRSK--DFILVDTAGRSQYNDFQMDELKQLLAAHPR 388

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           ++ H       V+ ATT +    ++    +      +I TK D T   G ++ ++   ++
Sbjct: 389 MEKHL------VVSATTKEQDAAEIMARFSACKPDRIIFTKTDETRSVGVVLNLLAGKEL 442

Query: 285 PVYFLGVGEGIND 297
           P+ FL  G+ + D
Sbjct: 443 PLSFLSNGQSVPD 455


>gi|38047671|gb|AAR09738.1| similar to Drosophila melanogaster Gtp-bp [Drosophila yakuba]
          Length = 126

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 20/133 (15%)

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           +VDV+++DTAGR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F
Sbjct: 2   RVDVVLVDTAGRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKF 55

Query: 253 H-AVAGTT---------GLIMTKMDGT-ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           + ++A  +         G+++TK D    + G  I +      P+ F+G G+   DL+  
Sbjct: 56  NQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLK-- 113

Query: 302 VAKDFSAVITGCL 314
            A + +AV+   +
Sbjct: 114 -AINVNAVVNSLM 125


>gi|161523357|ref|YP_001578369.1| flagellar biosynthesis regulator FlhF [Burkholderia multivorans
           ATCC 17616]
 gi|189351870|ref|YP_001947498.1| flagellar biosynthesis regulator FlhF [Burkholderia multivorans
           ATCC 17616]
 gi|160340786|gb|ABX13872.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia multivorans ATCC 17616]
 gi|189335892|dbj|BAG44962.1| flagellar biosynthesis protein [Burkholderia multivorans ATCC
           17616]
          Length = 583

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 23/199 (11%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+      
Sbjct: 345 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG- 403

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V      DA  L+      ++ +   +++IDT G    +      +   I +L     
Sbjct: 404 --VPVHAVKDAGDLS---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLH--GA 452

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGT---------TGLIMTKMDGTARGGGLIPI 278
             P   L +L+AT+  + L +V   +  AG           G I+TK+D     GG +  
Sbjct: 453 STPVQRLLLLNATSHGDTLNEVVQAYRSAGDRADLAGPDLAGCILTKLDEATHLGGALDT 512

Query: 279 VVTHKIPVYFLGVGEGIND 297
           V+ +K+PV+++  G+ + +
Sbjct: 513 VIRYKLPVHYVSTGQKVPE 531


>gi|322375335|ref|ZP_08049848.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           C300]
 gi|321279598|gb|EFX56638.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           C300]
          Length = 274

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 8/91 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FS 108
           LI SD+GV VA  + EEL  +   ++      L  V  +I K++    K  N+D    F 
Sbjct: 172 LIMSDVGVQVASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQ 229

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137
               V+L VGVNGVGKTT IGKL+ +  MSD
Sbjct: 230 DGLTVMLFVGVNGVGKTTSIGKLAHEHSMSD 260


>gi|320529413|ref|ZP_08030501.1| flagellar biosynthesis protein FlhF [Selenomonas artemidis F0399]
 gi|320138379|gb|EFW30273.1| flagellar biosynthesis protein FlhF [Selenomonas artemidis F0399]
          Length = 472

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 21/253 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF- 107
           + D L R D    V +++ EEL  K    D+++  +     E++   L  + K F     
Sbjct: 220 IRDALKRQD----VRKELREELAAKVPVADINLDSLSPRAKEVLAGYLSQVMK-FTDGLR 274

Query: 108 --SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164
             +H   V+  +G  GVGKTT + K++     +  LK  L   DT+R +A++QLK +A+ 
Sbjct: 275 LGAHGSRVVAFIGTTGVGKTTTLAKVAAHFVLEQNLKGALITADTYRISAVEQLKKYAEI 334

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                +  E+   AA L  +A  + ++K  D +++DTAGR   N   M  + +++    R
Sbjct: 335 LG---LPVEVVYSAADLK-KAIARHRSK--DFILVDTAGRSQYNDFQMDELKQLLAAHPR 388

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           ++ H       V+ ATT +    ++    +      +I TK D T   G ++ ++   ++
Sbjct: 389 MEKHL------VVSATTKEQDAAEIMARFSACKPDRIIFTKTDETRSVGVVLNLLAGKEL 442

Query: 285 PVYFLGVGEGIND 297
           P+ FL  G+ + D
Sbjct: 443 PLSFLSNGQSVPD 455


>gi|157813210|gb|ABV81350.1| putative signal recognition particle protein [Antheraea
           paukstadtorum]
          Length = 102

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 261 LIMTKMDGTARGGG-LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG L  +  TH   ++FL  GE I+DLEPF  K F   + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATHSPIIFFLVTGEHIDDLEPFKTKPFINKLLGTGD 67


>gi|146282910|ref|YP_001173063.1| flagellar biosynthesis regulator FlhF [Pseudomonas stutzeri A1501]
 gi|145571115|gb|ABP80221.1| flagellar biosynthesis protein FlhF [Pseudomonas stutzeri A1501]
          Length = 430

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 20/190 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWA---DRTSA 167
           VI +VG  GVGKTT + KL+ +  +      + LA+ D +R  A +QLK      D    
Sbjct: 212 VIALVGPAGVGKTTTLAKLAARYVLKYGAQSIALASMDNYRIGAQEQLKTLGRILDVPVL 271

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               SE  S +  LA  A K+       V++IDTAG   ++  L   +  +       D 
Sbjct: 272 QLDPSEPLSKS--LASLARKR-------VILIDTAGLPASDPTLRMQLQALS------DK 316

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
                   VL AT+    L+     +   G  G I+TK+D     G ++ + ++  +P+ 
Sbjct: 317 GVKSKNYLVLAATSQSQVLKAAWHNYRRCGLAGCILTKLDEAGSLGDVLGLTISQHLPIA 376

Query: 288 FLGVGEGIND 297
           +L  G  I D
Sbjct: 377 YLADGPRIPD 386


>gi|262303801|gb|ACY44493.1| signal recognition particle [Eurypauropus spinosus]
          Length = 101

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D E F  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATRSPIIFIGTGEHIDDFEQFKVKPFVSKLLGMGD 66


>gi|327481250|gb|AEA84560.1| flagellar biosynthesis regulator FlhF [Pseudomonas stutzeri DSM
           4166]
          Length = 430

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 20/190 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWA---DRTSA 167
           VI +VG  GVGKTT + KL+ +  +      + LA+ D +R  A +QLK      D    
Sbjct: 212 VIALVGPAGVGKTTTLAKLAARYVLKYGAQSIALASMDNYRIGAQEQLKTLGRILDVPVL 271

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               SE  S +  LA  A K+       V++IDTAG   ++  L   +  +       D 
Sbjct: 272 QLDPSEPLSKS--LASLARKR-------VILIDTAGLPASDPTLRMQLQALS------DK 316

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
                   VL AT+    L+     +   G  G I+TK+D     G ++ + ++  +P+ 
Sbjct: 317 GVKSKNYLVLAATSQSQVLKAAWHNYRRCGLAGCILTKLDEAGSLGDVLGLTISQHLPIA 376

Query: 288 FLGVGEGIND 297
           +L  G  I D
Sbjct: 377 YLADGPRIPD 386


>gi|119586297|gb|EAW65893.1| hCG2033479, isoform CRA_c [Homo sapiens]
          Length = 177

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 32/60 (53%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159


>gi|34496479|ref|NP_900694.1| flagellar biosynthesis regulator FlhF [Chromobacterium violaceum
           ATCC 12472]
 gi|34102333|gb|AAQ58699.1| flagellar biosynthetic protein FlhF [Chromobacterium violaceum ATCC
           12472]
          Length = 479

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD-F 169
           +  +VG  GVGKTT + KL+ +  M      V L   D++R  A DQL+I+        F
Sbjct: 263 IFALVGPTGVGKTTTVAKLAARATMRFGAQHVALITTDSYRIGAQDQLRIYGKILGVPVF 322

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                G     LA  + +        ++ IDT G    ++ ++A I  M+R   R     
Sbjct: 323 SIQNEGDLQLTLADLSNRH-------IVFIDTVGMGQRDARVLAQI-DMLRTAGR----- 369

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L +L A T  + L  V   +   G  G I++K+D     G  + +++ +++ +Y++
Sbjct: 370 PIERLLLLAANTDGHTLEDVVKRYRGDGLAGCILSKIDEAVAQGPSLDVIIRNRLKLYYV 429

Query: 290 GVGEGIND 297
             G+ + +
Sbjct: 430 TNGQRVPE 437


>gi|299069776|emb|CBJ41055.1| putative flagellar biosynthetic protein flhF [Ralstonia
           solanacearum CMR15]
          Length = 615

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 118/282 (41%), Gaps = 36/282 (12%)

Query: 28  LKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           LK  +TD +SS      +L D VR  L   ++ +     +           RY  D   Q
Sbjct: 306 LKSTLTDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQLT----------RYVLDNMPQ 355

Query: 83  RVLYD-----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--M 135
              YD     V   + K L  +  P       +  V  ++G  GVGKTT   KL+ +  +
Sbjct: 356 HGTYDSALDFVQRALEKNLTVV--PNENSLLDQGGVFALMGPTGVGKTTTTAKLAARFVL 413

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                +V L + D++R    +QL+I+           +   D + LA    ++       
Sbjct: 414 RHGASRVALLSTDSYRIGGHEQLRIYGKILGVSVHAVKDAQDLS-LALGDLREKH----- 467

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V++IDT G    +      + + + +L  + P      L +L+AT+    L +V   +  
Sbjct: 468 VVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIKR--LLLLNATSNGKTLDEVVSAYRD 521

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           A   G I+TK+D  A  G  +  ++ H++P++++  G+ + +
Sbjct: 522 ANLAGCILTKIDEAASVGHAMDAMIRHRLPLHYVSYGQRVPE 563


>gi|262303823|gb|ACY44504.1| signal recognition particle [Loxothylacus texanus]
          Length = 101

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V     P+ F+G GE I+DLE F  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATSSPIIFIGTGEHIDDLETFRVKPFISKLLGMGD 66


>gi|262303789|gb|ACY44487.1| signal recognition particle [Eurytemora affinis]
          Length = 100

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +++TK+DG A+GGG +  V   K PV F+G GE I++LE F  K F + + G  D
Sbjct: 12  VVITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDNLEMFEEKAFISKLLGMGD 66


>gi|297840121|ref|XP_002887942.1| hypothetical protein ARALYDRAFT_893071 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333783|gb|EFH64201.1| hypothetical protein ARALYDRAFT_893071 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 189

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 32/52 (61%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           VIL+ G+ GVGKT V  KL+  +   G   ML AGD +R A IDQL I  ++
Sbjct: 125 VILLAGLQGVGKTMVCAKLACYLKKQGKSCMLIAGDVYRPATIDQLVILGEQ 176


>gi|90406804|ref|ZP_01214996.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
 gi|90312041|gb|EAS40134.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
          Length = 481

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 97/197 (49%), Gaps = 28/197 (14%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            I ++G  GVGKTT I KL+ +  M     +V L   DT+R  A +QL  +         
Sbjct: 272 AIALLGPTGVGKTTTIAKLAAQFAMKYGADQVALITTDTYRIGAHEQLATYGKIMG---- 327

Query: 171 CS-EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           CS  +  DA  L+   +   Q ++  +++IDTAG    +          IR+ ++LD   
Sbjct: 328 CSVRVAKDADELSTILY---QFREKRLVLIDTAGMGQRD----------IRLSEQLDTLM 374

Query: 230 PHSVLQ-----VLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            ++ +      V+ +T+ +  + + +E F  +   +G I+TK+D +   G ++ +++ H 
Sbjct: 375 RNNSVNIKSYLVISSTSQRRIVEEALEHFKRIP-LSGCILTKIDESIGLGEVLSVMMQHA 433

Query: 284 IPVYFLGVGEGI-NDLE 299
           +P+ ++  G+ +  D+E
Sbjct: 434 LPIAYMTTGQRVPEDIE 450


>gi|255636768|gb|ACU18718.1| unknown [Glycine max]
          Length = 175

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 13/158 (8%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86
           II  + L+D +  ++   L++SD+   +        + IV  E L   + K   +Q+ ++
Sbjct: 22  IIDEKVLNDCL-NDITRALLQSDVQFKLVRDMQTNIKNIVNLEDLAAGHNKRRIIQQAVF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           +  EL  K+L P  KP       +  V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  N--ELC-KILDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAFYHQKKGWKPALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
            DTFR+ A DQLK  A +    F  S + SD   L ++
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKLLWK 174


>gi|146307829|ref|YP_001188294.1| flagellar biosynthesis regulator FlhF [Pseudomonas mendocina ymp]
 gi|145576030|gb|ABP85562.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Pseudomonas mendocina ymp]
          Length = 437

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 19/212 (8%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLA 145
           ++ L H +  P  +P          VI +VG  G+GKTT + KL+ +  +     +V L 
Sbjct: 199 LAHLAHAIKTPKVEPLEEG-----GVIALVGPAGMGKTTTLAKLAARYVLKYGAQQVALV 253

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           + D+FR  A +QLK             + G        +A      K+V  +++DTAG  
Sbjct: 254 SMDSFRIGAQEQLKTLGRILGVSVTQIDPGQSL----LQALTPLAKKRV--VLVDTAGLP 307

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N+  L   +  +     +   +       VL AT+    L+     +   G +G I+TK
Sbjct: 308 GNDPALRLQLESLASARIKAKNYL------VLAATSQSQVLKAAYHSYKRCGLSGCILTK 361

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           +D  A  G ++ + +   +PV ++  G  I D
Sbjct: 362 LDEAASLGEVLGLAIGQHLPVAYVTDGPRIPD 393


>gi|262303859|gb|ACY44522.1| signal recognition particle [Stenochrus portoricensis]
          Length = 101

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I+D E F  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEQFKVKPFVSKLLGMGD 66


>gi|187918144|ref|YP_001883707.1| flagellar biosynthesis regulator FlhF [Borrelia hermsii DAH]
 gi|119860992|gb|AAX16787.1| flagellar biosynthesis protein FlhF [Borrelia hermsii DAH]
          Length = 393

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 29/195 (14%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSK----KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           +  + ++VG  GVGKTT I KL+        D  L + +   D +R  A  Q++ + D  
Sbjct: 178 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDI- 236

Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                   +G    A+  E+FK       Q+K  D+++IDT G+   + + +A + +++ 
Sbjct: 237 --------MGIPVKAI--ESFKDLKEEITQSKDFDLVLIDTIGKSPKDFMKLAEMKELLN 286

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278
              R D     +V     +TT    ++  E+FH  +      +I TK+D T   G LI +
Sbjct: 287 ACGR-DAEFHLAV----SSTTKTADIK--EIFHQFSPFSYKTVIFTKLDETTCVGNLISL 339

Query: 279 VVTHKIPVYFLGVGE 293
           +   +  V ++  G+
Sbjct: 340 IHEMRKEVSYITDGQ 354


>gi|17549611|ref|NP_522951.1| flagellar biosynthesis regulator FlhF [Ralstonia solanacearum
           GMI1000]
 gi|17431865|emb|CAD18543.1| probable flagellar biosynthetic protein flhf [Ralstonia
           solanacearum GMI1000]
          Length = 615

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 14/187 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  +     +V L + D++R    +QL+I+        V
Sbjct: 389 VFALMGPTGVGKTTTTAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILG---V 445

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  L+         ++  V++IDT G    +      + + + +L  + P   
Sbjct: 446 TVHAVKDAQDLS---LALGDLREKHVVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIK 498

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L +L+AT+    L +V   +  A   G I+TK+D  A  G  +  ++ H++P++++ 
Sbjct: 499 R--LLLLNATSNGKTLDEVVSAYRDANLAGCILTKIDEAASVGHAMDAMIRHRLPLHYVS 556

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 557 YGQRVPE 563


>gi|300113618|ref|YP_003760193.1| flagellar biosynthetic protein FlhF [Nitrosococcus watsonii C-113]
 gi|299539555|gb|ADJ27872.1| flagellar biosynthetic protein FlhF [Nitrosococcus watsonii C-113]
          Length = 393

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 30/217 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDA-GL-KVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +I +VG  GVGKTT + KL+ + +   GL  V L   D FR  A +QL  +        +
Sbjct: 176 IIALVGPTGVGKTTSVAKLAARFALCHGLHSVALVTTDCFRIGAQEQLHTYGRILG---I 232

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMAGIGKMIRVLKR 224
             ++  D   L  E  +    +++  ++IDTAG       L     ++AG    IR    
Sbjct: 233 PVKVAHDRQTL-QETLEYLADRRL--VLIDTAGMSQRDMHLTEQFSMLAGGTLAIRNYLV 289

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           L      SVL  +           V  F+ +    G I+TK+D  A  GG++   + H +
Sbjct: 290 LSAATQFSVLDEV-----------VRKFNRI-DLAGCILTKLDEAASLGGMVSTAIRHHL 337

Query: 285 PVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320
           P+ ++  G+ +  D  P  A++   +++   +Y  EK
Sbjct: 338 PLAYVCNGQRVPEDFAPACAQNVVHLLS---EYAHEK 371


>gi|119586298|gb|EAW65894.1| hCG2033479, isoform CRA_d [Homo sapiens]
          Length = 337

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 32/60 (53%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159


>gi|119586299|gb|EAW65895.1| hCG2033479, isoform CRA_e [Homo sapiens]
          Length = 341

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 32/60 (53%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F
Sbjct: 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159


>gi|119953069|ref|YP_945278.1| flagellar biosynthesis regulator FlhF [Borrelia turicatae 91E135]
 gi|119861840|gb|AAX17608.1| flagellar biosynthesis protein FlhF [Borrelia turicatae 91E135]
          Length = 393

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 29/195 (14%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSK----KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           +  + ++VG  GVGKTT I KL+        D  L + +   D +R  A  Q++ + D  
Sbjct: 178 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDI- 236

Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                   +G    A+  E+FK       Q+K  D+++IDT G+   + + +A + +++ 
Sbjct: 237 --------MGIPVKAI--ESFKDLKEEITQSKDFDLVLIDTIGKSPKDFMKLAEMKELLN 286

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278
              R D     +V     +TT    ++  E+FH  +      +I TK+D T   G LI +
Sbjct: 287 ACGR-DAEFHLAV----SSTTKTADIK--EIFHQFSPFSYKTVIFTKLDETTCVGNLISL 339

Query: 279 VVTHKIPVYFLGVGE 293
           +   +  V ++  G+
Sbjct: 340 IHEMRKEVSYVTDGQ 354


>gi|330904768|gb|EGH35340.1| cell division protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 49

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 28/38 (73%)

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           VMLAAGDTFR+AA++QL++W +R     +    G+D+A
Sbjct: 12  VMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSA 49


>gi|88858093|ref|ZP_01132735.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2]
 gi|88819710|gb|EAR29523.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2]
          Length = 471

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 15/186 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT + KL+          K+ L   DT+R  A +QL  +         
Sbjct: 255 VFALVGPTGVGKTTTVAKLAALGAQKFGADKIALITTDTYRIGAYEQLATYGRIIGCPVK 314

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +  ++ A + Y        +   +++IDTAG    +  L   +  +++   R+D  + 
Sbjct: 315 QVKDANELAEMLY------HLRNKRLVLIDTAGMSQRDLRLTEQLNTLMKNA-RVDIRS- 366

Query: 231 HSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                VL AT     L++ V+ F  V   +G I TK+D     G +I I + +++P+ +L
Sbjct: 367 ---YLVLSATAQHEVLQETVKHFKKV-HLSGCIFTKLDECLSLGEIISIAIQNRLPIGYL 422

Query: 290 GVGEGI 295
             G+ +
Sbjct: 423 TNGQRV 428


>gi|302792763|ref|XP_002978147.1| hypothetical protein SELMODRAFT_417824 [Selaginella moellendorffii]
 gi|300154168|gb|EFJ20804.1| hypothetical protein SELMODRAFT_417824 [Selaginella moellendorffii]
          Length = 175

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 8/130 (6%)

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           A  DT R+ A D LK  A +     + SEI  D   +A E  ++    K D++I+DT+GR
Sbjct: 8   ACADTVRAGAFDPLKQNATKVK---IPSEI--DPVVIAQEGVRKFADAKHDLIILDTSGR 62

Query: 205 -LHNNSILMAGIGKMIRVLKRLDP--HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
               N  L A     +R+L         P  ++ V+D++  Q A  Q   F   A    +
Sbjct: 63  HKQENEELAAARVFFLRILSICSRTLQNPDLIIFVMDSSIWQAANDQTLAFIESAKVGAV 122

Query: 262 IMTKMDGTAR 271
           I+TKMDG A+
Sbjct: 123 IITKMDGHAK 132


>gi|207725000|ref|YP_002255397.1| cell division protein [Ralstonia solanacearum MolK2]
 gi|206590227|emb|CAQ37188.1| cell division protein [Ralstonia solanacearum MolK2]
          Length = 317

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 118/280 (42%), Gaps = 36/280 (12%)

Query: 28  LKEGITDIISSR-----RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           LK  +TD +SS      +L D VR  L   ++ +     +           RY  D   Q
Sbjct: 8   LKSTLTDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQLT----------RYVLDNMPQ 57

Query: 83  RVLYD-----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--M 135
              YD     V   + K L  +  P       +  V  ++G  GVGKTT   KL+ +  +
Sbjct: 58  HGTYDSALDFVQRALEKNLTVV--PDENSLLDQGGVFALMGPTGVGKTTTTAKLAARFVL 115

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                +V L + D++R    +QL+I+        V      DA  L+         ++  
Sbjct: 116 RHGASRVALLSTDSYRIGGHEQLRIYGKILG---VTVHAVKDAQDLS---LALGDLREKH 169

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V++IDT G    +      + + + +L  + P      L +L++T+    L +V   +  
Sbjct: 170 VVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIKR--LLLLNSTSNGKTLDEVVSAYRD 223

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A   G I+TK+D  A  G  + +++ +++P++++  G+ +
Sbjct: 224 ANLAGCILTKIDEAASVGHAMDVMIRNRLPLHYVSYGQRV 263


>gi|262303783|gb|ACY44484.1| signal recognition particle [Dinothrombium pandorae]
          Length = 101

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +++TK+DG A+GGG +  V     P+ F+G GE I+D E F  K F + + G  D
Sbjct: 12  VVVTKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDFEQFKVKPFVSKLLGMGD 66


>gi|317407054|gb|EFV87072.1| flagellar biosynthesis protein [Achromobacter xylosoxidans C54]
          Length = 592

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 114/265 (43%), Gaps = 37/265 (13%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE     L RS +    + K+V  L+ +  A       + +  +EL+  + +  S+    
Sbjct: 42  REPAGAALFRSLLDAGFSTKLVRTLVERMPAGATPEAALAWARNELVTHLPVLGSE---- 97

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D      V  +VG  GVGKTT + KL+ +    +   +V +   D FR  A++QL+I+  
Sbjct: 98  DEFLGGGVYALVGPTGVGKTTTLAKLAARCVAREGREQVAMLTTDNFRIGALEQLQIYGR 157

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMAGIGK 217
                 V +    DA  L     +    K   +++IDT G      ++   + ++   GK
Sbjct: 158 LMG---VPAHSVRDAGELRRILGELGNRK---IVLIDTTGISQRDRQVAEQASMLCNAGK 211

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG-----TTGLIMTKMDGTARG 272
            +R L             VL+A +  + L +V   HA          G I+TK+D  +R 
Sbjct: 212 PVRRLL------------VLNAASQGDTLDEVA--HAYRNGVGEDVAGCIITKLDEASRL 257

Query: 273 GGLIPIVVTHKIPVYFLGVGEGIND 297
           G  +   + H++P+++  +G+ + +
Sbjct: 258 GAALDTAIRHRLPIHYSSIGQKVPE 282


>gi|207108795|ref|ZP_03242957.1| cell division protein (ftsY) [Helicobacter pylori HPKX_438_CA4C1]
          Length = 63

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 34/47 (72%)

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           G+IMTK+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F
Sbjct: 5   GVIMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERF 51


>gi|209964118|ref|YP_002297033.1| flagellar GTP-binding protein FlhF [Rhodospirillum centenum SW]
 gi|209957584|gb|ACI98220.1| flagellar GTP-binding protein FlhF [Rhodospirillum centenum SW]
          Length = 330

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 27/234 (11%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++++ D+L+R  +   ++ ++++ +       D+S +  L  +S  +  +      P  
Sbjct: 69  VQDQVSDVLLRHGVPQELSAQMLDSI------ADLSARDPLTALSAALDAVFA--FSPLP 120

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              + RP  I++VG  G GKT  I KL  + +  G  V + + DT R+  I+QL+ +   
Sbjct: 121 ETRAPRP--IMLVGPPGCGKTLTIAKLCARSALRGRPVGVISTDTVRAGGIEQLQAFTRV 178

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                +  E   D  ALA     Q   + ++ ++ID+AGR   N    A +  +   L  
Sbjct: 179 LKLRLITVE---DPPALAGALEVQ---RGIEQVVIDSAGR---NPYSAADMRDLREYLAA 229

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLI 276
            D      V  VL    G +A+   E   A A  G T L+ T++D   R G L+
Sbjct: 230 AD------VDPVLVMPAGLDAVEAAETARAFADVGVTRLLPTRLDLARRLGSLL 277


>gi|307248307|ref|ZP_07530332.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250534|ref|ZP_07532478.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307261759|ref|ZP_07543425.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306855177|gb|EFM87355.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857427|gb|EFM89539.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306868577|gb|EFN00388.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 548

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 257 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   LTK Y      +R L D                N  FS  +  ++ ++G 
Sbjct: 312 LGDKVIEVSNLTKSYG-----ERTLID----------------NLSFSIPKGAIVGIIGA 350

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS ++  D+G  VM     LA+ D FR +  D+  +W + ++   + + 
Sbjct: 351 NGAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTI 410

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 411 GNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 455


>gi|329904714|ref|ZP_08273915.1| Flagellar biosynthesis protein FlhF [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547858|gb|EGF32616.1| Flagellar biosynthesis protein FlhF [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 443

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 14/187 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT   KL+ +  M     K+ L   D +R    +QL+I+  +     V
Sbjct: 216 VFALVGPTGVGKTTTTAKLAARCVMRHGPGKLALIPTDGYRIGGYEQLRIYG-KILGVMV 274

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S        +A +  K         ++IDT G    + ++   +  +     R+     
Sbjct: 275 HSVKDESDLRIALDELKNKH-----TVLIDTVGVSQRDHMVTEQVAMLQGAGSRVKR--- 326

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L  L+AT+    L +V   +  +G  G +MTK+D  A  G ++ +V+  K+ ++++ 
Sbjct: 327 ---LLCLNATSTGETLNEVVRAYQGSGLAGCVMTKLDEAATIGSVLDVVIRQKLNLFYVA 383

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 384 NGQRVPE 390


>gi|262303815|gb|ACY44500.1| signal recognition particle [Libinia emarginata]
          Length = 101

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V   + P+ F+G GE I++ E F  K F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDNFEEFKTKPFISKLLGMGD 66


>gi|52425295|ref|YP_088432.1| putative ABC transporter ATP-binding protein [Mannheimia
           succiniciproducens MBEL55E]
 gi|52307347|gb|AAU37847.1| Uup protein [Mannheimia succiniciproducens MBEL55E]
          Length = 560

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S        ++ S        R E  +L I    G  
Sbjct: 269 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 323

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E LTK Y      +R L D         +  S P       +  ++ ++G N
Sbjct: 324 LGDKVLEVEHLTKSYG-----ERTLIDD--------LSFSIP-------KGAIVGIIGPN 363

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS K+  D+G       V+LA+ D FR A  D+  +W + ++   + +  
Sbjct: 364 GAGKSTLFRMLSGKEQPDSGSITLGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 423

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 424 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 467


>gi|32035045|ref|ZP_00135111.1| COG0488: ATPase components of ABC transporters with duplicated
           ATPase domains [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126208749|ref|YP_001053974.1| putative ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae L20]
 gi|165976702|ref|YP_001652295.1| putative ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303252088|ref|ZP_07338257.1| putative ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|126097541|gb|ABN74369.1| ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165876803|gb|ABY69851.1| ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302649070|gb|EFL79257.1| putative ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 556

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   LTK Y      +R L D                N  FS  +  ++ ++G 
Sbjct: 320 LGDKVIEVSNLTKSYG-----ERTLID----------------NLSFSIPKGAIVGIIGA 358

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS ++  D+G  VM     LA+ D FR +  D+  +W + ++   + + 
Sbjct: 359 NGAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTI 418

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 419 GNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|255564956|ref|XP_002523471.1| signal recognition particle 54 kD protein, putative [Ricinus
           communis]
 gi|223537299|gb|EEF38930.1| signal recognition particle 54 kD protein, putative [Ricinus
           communis]
          Length = 194

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 41/78 (52%)

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           + +  Q A  Q + F        +++TKMDG A+GG  +  V      V F+G GE +++
Sbjct: 40  EKSISQAAFDQAQAFKQRVAVGAMVITKMDGHAKGGVALSAVAATNSLVIFIGTGEHMSN 99

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F A+ F ++++G  D
Sbjct: 100 FQQFDAQSFVSLLSGMGD 117


>gi|145298361|ref|YP_001141202.1| flagellar biosynthesis protein FlhF [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851133|gb|ABO89454.1| flagellar biosynthesis protein FlhF [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 472

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 118/254 (46%), Gaps = 32/254 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-- 134
           +D+S+ + +  ++E++   L    K    D   +   + ++G  GVGKTT I KL+ +  
Sbjct: 223 EDMSIHQAMAQLAEVLTAQL----KISEDDILRQGGAVALLGPTGVGKTTTIAKLAARFA 278

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           M     +V L   D +R  A +QL+ +               DA  LA   +   Q +  
Sbjct: 279 MKYGAEQVALITTDNYRIGAHEQLQTYGRIMGCPVRQVR---DAEELANALY---QFRHR 332

Query: 195 DVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHAPHSVLQ-----VLDATTGQNALRQ 248
            +++IDTAG           +G+  IR+ ++LD    ++ ++     V+ AT+ +  +++
Sbjct: 333 RLVLIDTAG-----------VGQRDIRLTEQLDTLVKNAKVRIRSYLVMSATSQRRVMQE 381

Query: 249 -VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306
            V+ F  +   +G I+TK+D +   G +I + + + +P+ ++  G+ +  D++   A   
Sbjct: 382 AVDHFRRIP-LSGCILTKLDESLNLGEVINVCIQNALPISYITDGQRVPEDIQVANAAQL 440

Query: 307 SAVITGCLDYGEEK 320
                G L+   E+
Sbjct: 441 VGAAMGSLEQETEE 454


>gi|88704272|ref|ZP_01101986.1| flagellar biosynthetic protein FlhF [Congregibacter litoralis KT71]
 gi|88701323|gb|EAQ98428.1| flagellar biosynthetic protein FlhF [Congregibacter litoralis KT71]
          Length = 360

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 18/192 (9%)

Query: 106 DFSHRP-HVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVM-LAAGDTFRSAAIDQLKIWA 162
           D    P ++  V G  GVGKT+ + +L+ + +   G +++ L   D +R  A +QL  +A
Sbjct: 145 DLEQLPGNITAVYGGTGVGKTSTVARLAGRDIQRLGPEMVGLITLDNYRIGAQEQLASFA 204

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D        +   SD   L+  A ++ Q +++    IDTAG   +++ L  G   +IR L
Sbjct: 205 DALGIPLFSA---SDRHTLSL-ALRKMQGRRI---YIDTAGMSQHDARLQ-GQYALIREL 256

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           ++     P   L VL A+   +  R +    A    +G I++K+D     GG++ ++++ 
Sbjct: 257 RK-----PVRHLMVLAASAQPSQCRALAANFAPHTLSGAIISKVDEAQSLGGVLDVLISS 311

Query: 283 KIPVYFLGVGEG 294
           ++PV  LG  +G
Sbjct: 312 QLPV--LGYSDG 321


>gi|330882866|gb|EGH17015.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 386

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 22/179 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +  +      + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLD 226
             + G        +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L 
Sbjct: 284 HVDPGQSLV----QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL- 336

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                    VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++P
Sbjct: 337 ---------VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELP 386


>gi|116626503|ref|YP_828659.1| GTP-binding signal recognition particle [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229665|gb|ABJ88374.1| GTP-binding signal recognition particle SRP54, G- domain
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 389

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 117/271 (43%), Gaps = 30/271 (11%)

Query: 44  GVREELEDL---LIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSELIHKML 96
           GV +++ D    L  +D+   +A+++V+     L  +R   + + QR+  D +     + 
Sbjct: 111 GVSQDVSDAYAALTAADVSAELAREVVQAAGNRLNGQRAPVNRTPQRI--DGAAFERALA 168

Query: 97  MPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTF 150
              S  F  D +       PH+  +VG  G GKTT + KL+     A  + V+L + DT+
Sbjct: 169 EEFSSRFTVDATLGRGPAEPHIAALVGPPGSGKTTTLVKLAIHFGLAARRPVLLLSMDTY 228

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AA +QL+ +A      F   E  +  A    +A ++ + K  ++++IDT G       
Sbjct: 229 RVAAAEQLRSYAAILGVGFQVLETVNSLA----QAIEENRGK--ELILIDTPGLGLGELE 282

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL-RQVEMFHAVAGTTGLIMTKMDGT 269
             A  G  +     +D H       VL A+     L R V+ F  V     L+ T++D T
Sbjct: 283 DSASFGHFLSTRSDIDTHL------VLSASMKPADLSRMVDAF-GVLRPQHLLFTRLDET 335

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGI-NDLE 299
              G +         P+ F   G+ I  DLE
Sbjct: 336 GSYGQIFSEAARTGKPLSFFTHGQRIPEDLE 366


>gi|307824494|ref|ZP_07654719.1| flagellar biosynthetic protein FlhF [Methylobacter tundripaludum
           SV96]
 gi|307734478|gb|EFO05330.1| flagellar biosynthetic protein FlhF [Methylobacter tundripaludum
           SV96]
          Length = 475

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 115/270 (42%), Gaps = 25/270 (9%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           DLL R   G+++++K+  ++   R+      + V     EL+ K+L P++     D    
Sbjct: 207 DLLQRL-AGMSISRKLSVKI-ANRFTNHTDPELVFSQAQELLAKVL-PVA---GDDLLQH 260

Query: 111 PHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             +  +VG  GVGKTT I KL+ K  +     +V L   D +R  A +QL  +       
Sbjct: 261 GGIAALVGPTGVGKTTTIAKLAAKFILKHGPRQVALITTDNYRIGAHEQLNTYGRILD-- 318

Query: 169 FVCSEIGSDAAALAY--EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            V   + S AA L      F   +     +++IDTAG    +  L+  I  + +    + 
Sbjct: 319 -VPVRVASSAAELRNLINGFSDKR-----LILIDTAGMSQRDMKLVEQINTLQQSGIDIK 372

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            +       V+ A T   A+ ++     V      I+TK+D  A  G  +  ++ + +P+
Sbjct: 373 SYL------VMSAATEYKAMNEIIKAFQVFEPQASILTKLDEAATIGSAVSSIIENNLPL 426

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITGCLD 315
            F+  G+ +  D+    A+   A     LD
Sbjct: 427 SFIADGQQVPEDMHSPCARTLIAQCVAELD 456


>gi|315634002|ref|ZP_07889291.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Aggregatibacter segnis ATCC 33393]
 gi|315477252|gb|EFU67995.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Aggregatibacter segnis ATCC 33393]
          Length = 556

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S        ++ S        R E  +L I    G  
Sbjct: 265 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + L+K Y       R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVQHLSKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS K+  D+G       V+LA+ D FR A  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGKEQPDSGSITLGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L AG
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG 463


>gi|251792937|ref|YP_003007663.1| putative ABC transporter ATP-binding protein [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534330|gb|ACS97576.1| ABC transporter domain protein [Aggregatibacter aphrophilus NJ8700]
          Length = 556

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S        ++ S        R E  +L I    G  
Sbjct: 265 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + L+K Y       R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVQHLSKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKL-SKKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   L SK+  D+G       V+LA+ D FR A  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSSKEQPDSGTITLGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L AG
Sbjct: 420 NFEIPSRAYVGRFNFKGIDQQKRVGELSGGERGRLHLAKLLQAG 463


>gi|77165622|ref|YP_344147.1| flagellar biosynthesis regulator FlhF [Nitrosococcus oceani ATCC
           19707]
 gi|254434668|ref|ZP_05048176.1| SRP54-type protein, GTPase domain [Nitrosococcus oceani AFC27]
 gi|76883936|gb|ABA58617.1| GTP-binding signal recognition particle SRP54 [Nitrosococcus oceani
           ATCC 19707]
 gi|207091001|gb|EDZ68272.1| SRP54-type protein, GTPase domain [Nitrosococcus oceani AFC27]
          Length = 393

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 123/287 (42%), Gaps = 37/287 (12%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           G R   +  L+R  +G+ +A  + ++L     A  V+ +   + + +   K L  L    
Sbjct: 112 GRRNPSKAQLLRRLMGLDLASDLCQQL-----AAQVNNEGAPHQIWQQALKGLTDLIPIA 166

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GL-KVMLAAGDTFRSAAIDQLKIW 161
           N D      +I +VG  GVGKTT + KL+ + +   GL  V L   D FR  A +QL  +
Sbjct: 167 NDDILSDGGIIALVGPTGVGKTTSVAKLAARFALCHGLHSVALVTTDCFRIGAQEQLHTY 226

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN-------SILMAG 214
                   +  ++  D   L  E  +    +++  ++IDTAG    +       ++L  G
Sbjct: 227 GRILG---IPVKVARDQQTL-QETLEYLADRRL--VLIDTAGMSQRDMHLTEQFTMLAEG 280

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
             ++   L             VL A T  + L +V          G I+TK+D  A  GG
Sbjct: 281 TLEIRNYL-------------VLSAATQFSVLDEVVRKFNRIDLAGCILTKLDEAASLGG 327

Query: 275 LIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320
           ++   + H +P+ ++  G+ +  D  P  A++   +++   +Y  E+
Sbjct: 328 MVSAAIRHHLPLAYVCDGQRVPEDFSPARAQNIVHLLS---EYAHEQ 371


>gi|262303851|gb|ACY44518.1| signal recognition particle [Prokoenenia wheeleri]
          Length = 101

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V     P+ F+G GE I+D E F  K F + + G  D
Sbjct: 12  VIVTKLDGHAKGGGALSAVAATHSPIIFIGTGEHIDDFELFKVKPFVSKLLGMGD 66


>gi|301169992|emb|CBW29596.1| fused predicted transporter subunits of ABC superfamily:
           ATP-binding components [Haemophilus influenzae 10810]
          Length = 556

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + LTK Y       R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G  +M     LA+ D FR A  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSVIMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|240948321|ref|ZP_04752707.1| putative ABC transporter ATP-binding protein [Actinobacillus minor
           NM305]
 gi|240297360|gb|EER47901.1| putative ABC transporter ATP-binding protein [Actinobacillus minor
           NM305]
          Length = 556

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S        ++ S        R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y       R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVSNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G  VM     LA+ D FR A  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L AG
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG 463


>gi|311992311|gb|ADQ26729.1| master regulator for class II operons [Aeromonas hydrophila]
          Length = 473

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 118/254 (46%), Gaps = 32/254 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-- 134
           +D+S+ + +  ++E++   L    K    +   +   + ++G  GVGKTT I KL+ +  
Sbjct: 224 EDMSIHQAMAQLAEVLTAQL----KISEDEILRQGGAVALLGPTGVGKTTTIAKLAARFA 279

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           M     +V L   D +R  A +QL+ +               DA  LA   +   Q +  
Sbjct: 280 MKYGAEQVALITTDNYRIGAHEQLQTYGRIMGCPVRQVR---DAEELANALY---QFRHR 333

Query: 195 DVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHAPHSVLQ-----VLDATTGQNALRQ 248
            +++IDTAG           +G+  IR+ ++LD    ++ ++     V+ AT+ +  +++
Sbjct: 334 RLVLIDTAG-----------VGQRDIRLTEQLDTLVKNAKVRIRSYLVMSATSQRRVMQE 382

Query: 249 -VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306
            V+ F  +   +G I+TK+D +   G +I + + + +P+ ++  G+ +  D++   A   
Sbjct: 383 AVDHFRRIP-LSGCILTKLDESLNLGEVINVCIQNALPISYITDGQRVPEDIQVANAAQL 441

Query: 307 SAVITGCLDYGEEK 320
                G L+   E+
Sbjct: 442 VGAAMGSLERETEE 455


>gi|117618453|ref|YP_855919.1| flagellar biosynthesis protein FlhF [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559860|gb|ABK36808.1| flagellar biosynthesis protein FlhF [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 473

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 118/254 (46%), Gaps = 32/254 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-- 134
           +D+S+ + +  ++E++   L    K    +   +   + ++G  GVGKTT I KL+ +  
Sbjct: 224 EDMSIHQAMAQLAEVLAAQL----KISEDEILRQGGAVALLGPTGVGKTTTIAKLAARFA 279

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           M     +V L   D +R  A +QL+ +               DA  LA   +   Q +  
Sbjct: 280 MKYGAEQVALITTDNYRIGAHEQLQTYGRIMGCPVRQVR---DAEELANALY---QFRHR 333

Query: 195 DVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHAPHSVLQ-----VLDATTGQNALRQ 248
            +++IDTAG           +G+  IR+ ++LD    ++ ++     V+ AT+ +  +++
Sbjct: 334 RLVLIDTAG-----------VGQRDIRLTEQLDTLVKNAKVRIRSYLVMSATSQRRVMQE 382

Query: 249 -VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306
            V+ F  +   +G I+TK+D +   G +I + + + +P+ ++  G+ +  D++   A   
Sbjct: 383 AVDHFRRIP-LSGCILTKLDESLNLGEVINVCIQNALPISYITDGQRVPEDIQVANAAQL 441

Query: 307 SAVITGCLDYGEEK 320
                G L+   E+
Sbjct: 442 VGAAMGSLERETEE 455


>gi|152989657|ref|YP_001349228.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa PA7]
 gi|150964815|gb|ABR86840.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa PA7]
          Length = 429

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ +VG  G GKTT + K++ +  +      + L + D++R  A +Q+K      +    
Sbjct: 211 VLALVGPAGAGKTTTLAKMAARYVLKYGAQSLALVSMDSYRIGAQEQIKTLGRILNVPVT 270

Query: 171 CSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             + G S   ALA  A K+       +L+IDTAG   ++  L   +  +        P  
Sbjct: 271 LVDPGQSLIQALAPLARKR-------MLLIDTAGLPASDPALRMQLEALA------SPSL 317

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 V+  T+    LR     +   G  G IMTK+D     G  + + +  ++PV +L
Sbjct: 318 NVKNYLVMATTSQSQVLRSAYQTYRHCGLAGCIMTKLDEAGSLGESMALAIAQRLPVAYL 377

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 378 ADGPRIPD 385


>gi|167856376|ref|ZP_02479103.1| putative ABC transporter ATP-binding component [Haemophilus
           parasuis 29755]
 gi|219871535|ref|YP_002475910.1| putative ABC transporter ATP-binding protein [Haemophilus parasuis
           SH0165]
 gi|167852514|gb|EDS23801.1| putative ABC transporter ATP-binding component [Haemophilus
           parasuis 29755]
 gi|219691739|gb|ACL32962.1| putative ABC transporter ATP-binding protein [Haemophilus parasuis
           SH0165]
          Length = 556

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S        ++ S        R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y       R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVSNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G  VM     LA+ D FR A  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L AG
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG 463


>gi|260914236|ref|ZP_05920709.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Pasteurella dagmatis ATCC 43325]
 gi|260631869|gb|EEX50047.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Pasteurella dagmatis ATCC 43325]
          Length = 548

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S        ++ S        R E  +L I    G  
Sbjct: 257 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E + LTK Y       R L D                N  FS  +  ++ ++G 
Sbjct: 312 LGDKVIEVQGLTKSYG-----DRTLID----------------NLSFSIPKGAIVGIIGP 350

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS ++  DAG       V+LA+ D FR A  D+  +W + ++   +   
Sbjct: 351 NGAGKSTLFRILSGQEKPDAGTVTLGDTVVLASVDQFRDAMDDKKTVWEEVSNGQDILRI 410

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K+V  L     GRLH   +L AG
Sbjct: 411 GNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG 455


>gi|119476302|ref|ZP_01616653.1| flagellar biosynthesis protein [marine gamma proteobacterium
           HTCC2143]
 gi|119450166|gb|EAW31401.1| flagellar biosynthesis protein [marine gamma proteobacterium
           HTCC2143]
          Length = 515

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 14/185 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V   VG  G GKTT IGKL+ +  + +    V L   DT R AA +QL+ +  R     V
Sbjct: 294 VFAFVGPTGAGKTTTIGKLATRYVLENGAENVALVTTDTMRIAAHEQLRTFG-RILKVPV 352

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
           C    +++      + +        +++IDTAG    +  L + +  +  +  R+     
Sbjct: 353 CIVDKNNSLDRVLHSLRHKS-----LVLIDTAGLNRQDPKLQSQLSSLNELGDRV----- 402

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            S+L V+  T+  + +R     +        ++TK+D T   GG + +++   + V +  
Sbjct: 403 QSIL-VIPTTSQPDVVRSAYHTYKTDNMNLCVLTKLDETMSLGGALTVIIDKSLSVAYST 461

Query: 291 VGEGI 295
            G+ I
Sbjct: 462 DGQAI 466


>gi|119775417|ref|YP_928157.1| flagellar biosynthesis regulator FlhF [Shewanella amazonensis SB2B]
 gi|119767917|gb|ABM00488.1| flagellar biosynthetic protein FlhF [Shewanella amazonensis SB2B]
          Length = 463

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 114/253 (45%), Gaps = 29/253 (11%)

Query: 55  RSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHR 110
           R+D +G  +  +++E   +   A  ++     Y+ +EL+  +   L+   +    D   R
Sbjct: 186 RTDPVGAMLETRLLEAEFSPAVAAKLAGLSQHYNPAELVKALPQSLANMLDNQGDDIVRR 245

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             V+  VG  GVGKTT I K++ + +      +V L   D +R  A +QL  +       
Sbjct: 246 GGVVAFVGPTGVGKTTSIAKIAARFAAHHGADQVALITTDHYRIGAFEQLATYGKIMGCP 305

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
              +   ++   + Y      Q +   +++IDTAG    +          +R++++LD  
Sbjct: 306 VKQAHDLNELQQILY------QLRNRKLVLIDTAGMGQRD----------MRLVEQLDNL 349

Query: 229 APHSVLQ-----VLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             +S L      VL AT+ +  L+  V+ F  +   +G ++TK+D +    G + +++  
Sbjct: 350 TANSALPIRSYLVLSATSQRRVLQDAVKHFQRIP-LSGAVLTKLDESVSLAGALSVLIQS 408

Query: 283 KIPVYFLGVGEGI 295
            +P+ ++  G+ +
Sbjct: 409 GLPLSYVTDGQRV 421


>gi|330828814|ref|YP_004391766.1| flagellar biosynthesis protein FlhF [Aeromonas veronii B565]
 gi|328803950|gb|AEB49149.1| Flagellar biosynthesis protein FlhF [Aeromonas veronii B565]
          Length = 474

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 118/254 (46%), Gaps = 32/254 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-- 134
           +D+S+ + +  ++E++   L    K    +   +   + ++G  GVGKTT I KL+ +  
Sbjct: 225 EDMSIHQAMAQLAEVLTAQL----KISEDEIMRQGGAVALLGPTGVGKTTTIAKLAARFA 280

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           M     +V L   D +R  A +QL+ +               DA  LA   +   Q +  
Sbjct: 281 MKYGAEQVALITTDNYRIGAHEQLQTYGRIMGCPVRQVR---DAEELANALY---QFRHR 334

Query: 195 DVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHAPHSVLQ-----VLDATTGQNALRQ 248
            +++IDTAG           +G+  IR+ ++LD    ++ ++     V+ AT+ +  +++
Sbjct: 335 RLVLIDTAG-----------VGQRDIRLTEQLDTLVKNAKVRIRSYLVMSATSQRRVMQE 383

Query: 249 -VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306
            V+ F  +   +G I+TK+D +   G +I + + + +P+ ++  G+ +  D++   A   
Sbjct: 384 AVDHFRRIP-LSGCILTKLDESLNLGEVINVCIQNSLPISYITDGQRVPEDIQVANAAQL 442

Query: 307 SAVITGCLDYGEEK 320
                G L+   E+
Sbjct: 443 VGAAMGSLERETEE 456


>gi|147678406|ref|YP_001212621.1| flagellar biosynthesis regulator FlhF [Pelotomaculum
           thermopropionicum SI]
 gi|146274503|dbj|BAF60252.1| flagellar GTP-binding protein [Pelotomaculum thermopropionicum SI]
          Length = 415

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 24/243 (9%)

Query: 62  VAQKIVEELLT-----KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           V + IVE LL+        + D S +R  +++ + +  +L    +P          ++  
Sbjct: 164 VQENIVEHLLSVAGSGGNLSGDGS-RRFFFNLQKRVIDLLETAYRP-----GENARILTF 217

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VG  G+GKTT + KL+ + S    K + + A +T+R          A+R  A      I 
Sbjct: 218 VGPAGMGKTTTLTKLAARFSLYDRKKIAVIAVNTYRIGG------EAERLLAYGNLLGIP 271

Query: 176 SDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            +      E  K  ++    D ++IDT GR   ++  +  +   + V+K      PH + 
Sbjct: 272 VEVVMTPLELAKVLESHTDKDYILIDTNGRSARSTGQLLELKGFLDVVKE-----PHDIF 326

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VL +      L ++       G T LI TK+D T   G ++ +V     PV +L  G+ 
Sbjct: 327 LVLSSAAKNRDLSRIAWEFQKVGYTKLIFTKVDETETHGSILNLVCALGAPVAYLADGQE 386

Query: 295 IND 297
           I D
Sbjct: 387 IPD 389


>gi|82702440|ref|YP_412006.1| flagellar biosynthesis regulator FlhF [Nitrosospira multiformis
           ATCC 25196]
 gi|82410505|gb|ABB74614.1| GTP-binding signal recognition particle SRP54, G-domain
           [Nitrosospira multiformis ATCC 25196]
          Length = 570

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 27/196 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT   KL+ +  +     KV L   D++R    +QL+I+         
Sbjct: 334 VYALVGPTGVGKTTTTAKLAARCVVRHGASKVALLTTDSYRIGGHEQLRIYGKILGVSIH 393

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI------LMAGIGKMIRVLKR 224
                 D A +  E       +   +++IDT G    + +      +++G G  I+ L  
Sbjct: 394 AVRDTQDLALVLNEL------RGKHIVLIDTVGVGQRDQMVAEQVAMLSGCGSEIKRL-- 445

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                      +L+A +  + L +V   +   G  G I++K+D     G  + I + H +
Sbjct: 446 ----------LLLNAASSWHTLDEVAEAYWGDGLAGAIISKLDEAVVTGCALDIAMRHNL 495

Query: 285 PVYFLGVGEGI-NDLE 299
           P+Y++  G+ +  D+E
Sbjct: 496 PLYYVANGQRVPEDIE 511


>gi|223042148|ref|ZP_03612319.1| ABC transporter ATP-binding protein [Actinobacillus minor 202]
 gi|223017087|gb|EEF15528.1| ABC transporter ATP-binding protein [Actinobacillus minor 202]
          Length = 556

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S        ++ S        R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y      + ++ D+S  I K                  ++ ++G N
Sbjct: 320 LGDKVIEVSNLTKSYGD----RTLIDDLSFTIPKGA----------------IVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G  VM     LA+ D FR A  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L AG
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG 463


>gi|15602290|ref|NP_245362.1| putative ABC transporter ATP-binding protein [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|12720677|gb|AAK02509.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 556

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 95/228 (41%), Gaps = 44/228 (19%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGV---REELEDLLIRSDI 58
           + QK   + L W+R+  KG  + S         +     L++G    R E  +L I    
Sbjct: 265 ARQKSIEKELEWVRQNPKGRQAKSK------ARMARFEELNNGEYQKRNETNELFIPP-- 316

Query: 59  GVAVAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILV 116
           G  +  K++E + LTK Y       R L D                N  FS  +  ++ +
Sbjct: 317 GPRLGDKVIEVQNLTKTYG-----DRTLID----------------NLSFSIPKGAIVGI 355

Query: 117 VGVNGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +G NG GK+T+   LS ++  D+G       V+LA+ D FR A  D+  +W + ++   +
Sbjct: 356 IGPNGAGKSTLFRMLSGQEQPDSGTITLGETVVLASVDQFRDAMDDKKTVWEEVSNGQDI 415

Query: 171 CS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
                 EI S A    +      Q K+V  L     GRLH   +L AG
Sbjct: 416 LRIGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG 463


>gi|325578224|ref|ZP_08148359.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159960|gb|EGC72089.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 556

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E + LTK Y       R L D                N  FS  +  ++ ++G 
Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLID----------------NLSFSIPKGAIVGIIGP 358

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS ++  D+G       V+LA+ D FR +  D+  +W + ++   V + 
Sbjct: 359 NGAGKSTLFRMLSGQEQPDSGSITMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDVLTI 418

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 419 GNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|307263947|ref|ZP_07545550.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306870709|gb|EFN02450.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 548

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 257 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y      +R L D         +  S P       +  ++ ++G N
Sbjct: 312 LGDKVIEVNNLTKSYG-----ERTLIDD--------LSFSIP-------KGAIVGIIGAN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G  VM     LA+ D FR +  D+  +W + ++   + +  
Sbjct: 352 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTIG 411

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 412 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 455


>gi|308273534|emb|CBX30136.1| hypothetical protein N47_D29450 [uncultured Desulfobacterium sp.]
          Length = 351

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 17/173 (9%)

Query: 128 IGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           I KL+ +++    +KV L + D +R  AI+QLK +A+      + +    D  A      
Sbjct: 175 IAKLAAQLTLKNKIKVGLISIDNYRIGAIEQLKTYANILGIPCMPAFNRKDLVAAI---- 230

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL--DPHAPHSVLQVLDATTGQN 244
              +   VD +IIDTAG+   +       GK I  L+ +  D     S L +L+  T + 
Sbjct: 231 --GRLSNVDAIIIDTAGQSQYD-------GKRIEELRNIITDDLKIESHL-LLNVATAEE 280

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            + ++ +  ++      I TK+D + + G +I  ++  ++PV +L  G+ + D
Sbjct: 281 EMNKIAINFSLLEYKSYIFTKLDESEKYGSVINQLMKKQLPVSYLTTGQNVPD 333


>gi|254491645|ref|ZP_05104824.1| SRP54-type protein, GTPase domain [Methylophaga thiooxidans DMS010]
 gi|224463123|gb|EEF79393.1| SRP54-type protein, GTPase domain [Methylophaga thiooxydans DMS010]
          Length = 400

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 14/187 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +  +VG  GVGKTT I K++ +  +     +V L   D +R    +QL+ +A        
Sbjct: 187 IFALVGPTGVGKTTTIAKMAARCALKYGAREVALVTTDCYRIGGQEQLRSYARILGVPVR 246

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +   S+ A    +   +        ++IDTAG    +  L         +LK+  P   
Sbjct: 247 VARTHSELAYTLNDLLDRR------FILIDTAGMNQRDMQLTEKFA----LLKQQSPRVK 296

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             +   L A T  + +  +    +    +G I+TK D T+  GG +  ++ H++P+ ++ 
Sbjct: 297 TYL--TLSANTQASGINDIINAFSHLDLSGCIVTKTDETSSLGGALSALIRHRLPLAYVA 354

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 355 NGQQVPE 361


>gi|145630881|ref|ZP_01786658.1| ABC transporter ATP-binding protein [Haemophilus influenzae R3021]
 gi|144983541|gb|EDJ91009.1| ABC transporter ATP-binding protein [Haemophilus influenzae R3021]
          Length = 556

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + LTK Y       R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V+LA+ D FR A  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSVTMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|307252917|ref|ZP_07534805.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859555|gb|EFM91580.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 548

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 257 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y      +R L D         +  S P       +  ++ ++G N
Sbjct: 312 LGDKVIEVNNLTKSYG-----ERTLIDD--------LSFSIP-------KGAIVGIIGAN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G  VM     LA+ D FR +  D+  +W + ++   + +  
Sbjct: 352 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILNIG 411

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 412 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 455


>gi|301156131|emb|CBW15602.1| fused predicted transporter subunits of ABC superfamily:
           ATP-binding components [Haemophilus parainfluenzae T3T1]
          Length = 548

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 257 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E LTK Y       R L D         +  S P       +  ++ ++G N
Sbjct: 312 LGDKVIEVEHLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDA-----GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+     G  V+LA+ D FR +  D+  +W + ++   + +  
Sbjct: 352 GAGKSTLFRMLSGQEQPDSGSITMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTIG 411

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 412 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 455


>gi|224154027|ref|XP_002337428.1| predicted protein [Populus trichocarpa]
 gi|222839177|gb|EEE77528.1| predicted protein [Populus trichocarpa]
          Length = 162

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVA-------QKIVE-ELLTKRYAKDVSVQRVLY 86
           II  + L+D +  E+   L++SD+   +        +KIV  + L   + K   +Q+ ++
Sbjct: 22  IIDEKALNDCL-NEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           +  EL  K+L P    F      +  V++ VG+ G GKTT   K +      G K  L  
Sbjct: 81  N--ELC-KILDPGKSSFTPK-KGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136

Query: 147 GDTFRSAAIDQLKIWADRTSADF 169
            DTFR+ A DQLK  A +    F
Sbjct: 137 ADTFRAGAFDQLKQNATKAKIPF 159


>gi|260582939|ref|ZP_05850723.1| ABC transporter ATP-binding protein [Haemophilus influenzae NT127]
 gi|260094039|gb|EEW77943.1| ABC transporter ATP-binding protein [Haemophilus influenzae NT127]
          Length = 556

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + LTK Y       R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V+LA+ D FR A  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSVTMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|238025870|ref|YP_002910101.1| flagellar biosynthesis regulator FlhF [Burkholderia glumae BGR1]
 gi|124695887|gb|ABN14281.1| FlhF [Burkholderia glumae BGR1]
 gi|237875064|gb|ACR27397.1| FlhF [Burkholderia glumae BGR1]
          Length = 574

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 21/196 (10%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 340 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGRILG 399

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 + G D   LA    +        +++IDT G    +      +   I +L+  D
Sbjct: 400 VPVHAVKDGGDLQ-LALSELRNKH-----IVLIDTIGMSQRDRT----VSDQIAMLQGAD 449

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-----TGLIMTKMDGTARGGGLIPIVVT 281
             A    L +L AT+  + L +V    A  G+      G I+TK+D     GG++  V+ 
Sbjct: 450 --ARVQRLLLLAATSHGDTLNEV--VQAYRGSDQPDLAGCILTKLDEATNLGGVLDTVIR 505

Query: 282 HKIPVYFLGVGEGIND 297
           +++PV+++  G+ + +
Sbjct: 506 YQLPVHYVSTGQKVPE 521


>gi|190150602|ref|YP_001969127.1| ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189915733|gb|ACE61985.1| ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 556

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y      +R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVNNLTKSYG-----ERTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G  VM     LA+ D FR +  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|145636882|ref|ZP_01792547.1| ABC transporter ATP-binding protein [Haemophilus influenzae PittHH]
 gi|319776139|ref|YP_004138627.1| ABC transporter ATP-binding protein [Haemophilus influenzae F3047]
 gi|329123304|ref|ZP_08251870.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Haemophilus aegyptius ATCC 11116]
 gi|145269963|gb|EDK09901.1| ABC transporter ATP-binding protein [Haemophilus influenzae PittHH]
 gi|309972989|gb|ADO96190.1| Probable ABC transport system, ATP-binding protein [Haemophilus
           influenzae R2846]
 gi|317450730|emb|CBY86950.1| ABC transporter ATP-binding protein [Haemophilus influenzae F3047]
 gi|327471400|gb|EGF16850.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Haemophilus aegyptius ATCC 11116]
          Length = 556

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + LTK Y       R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V+LA+ D FR A  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSVTMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|303250636|ref|ZP_07336833.1| putative ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650624|gb|EFL80783.1| putative ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 556

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y      +R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVNNLTKSYG-----ERTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G  VM     LA+ D FR +  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILNIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|297787855|ref|XP_002862151.1| hypothetical protein ARALYDRAFT_359800 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297307306|gb|EFH38409.1| hypothetical protein ARALYDRAFT_359800 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 206

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 35/77 (45%)

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  V+ V+D++ GQ A  Q + F         I+T + G A+  G I  V   K P+   
Sbjct: 2   PARVVYVMDSSIGQAAFDQAQAFKQCFPRGVAIITNIHGNAKACGAISAVAAAKCPMILA 61

Query: 290 GVGEGINDLEPFVAKDF 306
             GE   D E F A+ F
Sbjct: 62  ETGEKREDFEAFEAEAF 78


>gi|253997222|ref|YP_003049286.1| flagellar biosynthesis regulator FlhF [Methylotenera mobilis JLW8]
 gi|253983901|gb|ACT48759.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methylotenera mobilis JLW8]
          Length = 459

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 110/247 (44%), Gaps = 21/247 (8%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           ++L+ S    A+A+     +L+++   +++  + L  V  ++ K L  L  P       +
Sbjct: 178 NILLSSGFSAALAR-----MLSEKMPANLNEAKALAWVKAILSKNLDNL--PSEMGMLDQ 230

Query: 111 PHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             +  ++G  GVGKTT   KL+ +  M      + L   D +R    +QL+I+       
Sbjct: 231 GGIFALIGPTGVGKTTTTAKLAARYVMKHGTESLGLITTDAYRIGGHEQLRIYGKILG-- 288

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V      D A L   A  + + K+   ++IDT G    ++++   I  +       + +
Sbjct: 289 -VMVHAVKDEADLKI-ALNELKNKRT--ILIDTVGVSQRDTMVTEQIAMLS------NTN 338

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           A    L  L+AT+    L  V   +   G  G I+TK+D     GG++ +++  K+ +Y+
Sbjct: 339 AGIKKLLCLNATSTGETLTDVIRAYKGKGLDGTIITKLDEAVTIGGVLDVIIRGKLKLYY 398

Query: 289 LGVGEGI 295
           L  G+ +
Sbjct: 399 LANGQRV 405


>gi|253996638|ref|YP_003048702.1| flagellar biosynthesis regulator FlhF [Methylotenera mobilis JLW8]
 gi|253983317|gb|ACT48175.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methylotenera mobilis JLW8]
          Length = 427

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 16/186 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  M      + L   D +R    +QL+I+        +
Sbjct: 203 VFALIGPTGVGKTTTTAKLAARYVMKHGTQNLGLITTDAYRVGGHEQLRIYGKILG--VI 260

Query: 171 CSEIGSDA-AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
              +  +A  ALA    K      +D + +    R+    I +   G           + 
Sbjct: 261 VHAVKDEADLALALNELKHKHTILIDTVGVSQRDRMVTEQIALLSAG-----------NT 309

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L  L AT     L  V   +   G  G I+TK+D  A  G  + +++  K+ +Y+ 
Sbjct: 310 PIKKLLCLSATNTGETLTDVISAYKGKGLDGCIITKLDEAATIGNTLDVIIREKLKLYYT 369

Query: 290 GVGEGI 295
             G+ +
Sbjct: 370 ATGQRV 375


>gi|148827041|ref|YP_001291794.1| putative ABC transporter ATP-binding protein [Haemophilus
           influenzae PittGG]
 gi|148718283|gb|ABQ99410.1| ABC transporter ATP-binding protein [Haemophilus influenzae PittGG]
          Length = 556

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + LTK Y       R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++ SD+G       V+LA+ D FR A  ++  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGQEQSDSGSVTMGETVVLASVDQFRDAMDNKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|319896948|ref|YP_004135143.1| abc transporter ATP-binding protein [Haemophilus influenzae F3031]
 gi|317432452|emb|CBY80807.1| ABC transporter ATP-binding protein [Haemophilus influenzae F3031]
          Length = 556

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + LTK Y       R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V+LA+ D FR A  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSVTMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|145633288|ref|ZP_01789019.1| ABC transporter ATP-binding protein [Haemophilus influenzae 3655]
 gi|145634417|ref|ZP_01790127.1| ABC transporter ATP-binding protein [Haemophilus influenzae PittAA]
 gi|229845020|ref|ZP_04465156.1| putative ABC transporter ATP-binding protein [Haemophilus
           influenzae 6P18H1]
 gi|144986134|gb|EDJ92724.1| ABC transporter ATP-binding protein [Haemophilus influenzae 3655]
 gi|145268397|gb|EDK08391.1| ABC transporter ATP-binding protein [Haemophilus influenzae PittAA]
 gi|229811992|gb|EEP47685.1| putative ABC transporter ATP-binding protein [Haemophilus
           influenzae 6P18H1]
          Length = 556

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + LTK Y       R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V+LA+ D FR A  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSVTMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|317121834|ref|YP_004101837.1| GTP-binding signal recognition particle SRP54 G- domain
           [Thermaerobacter marianensis DSM 12885]
 gi|315591814|gb|ADU51110.1| GTP-binding signal recognition particle SRP54 G- domain
           [Thermaerobacter marianensis DSM 12885]
          Length = 451

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 23/208 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            + VVG  G GKTTV+  L+ + + D G +V L A DT+R  A   L  +AD        
Sbjct: 231 TVAVVGPTGAGKTTVVASLAARALLDEGREVALLAADTYRLGATSALSAYADLLGVPLEV 290

Query: 172 SEIGSDAAALAY-------EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
           +    + AA A           ++A  +   V ++DTAGR      + A +  +++  + 
Sbjct: 291 AYAPGEVAAWAGVRPGGADHRPEEATRRPDRVALVDTAGRNLLLPEVAAELAALVQAAR- 349

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  VL VL AT        +       G T L++TK+D        +       +
Sbjct: 350 -----PDRVLLVLPATLAPAEAAALVGVGRRLGVTDLVLTKLDECLDPRAALARAARWGL 404

Query: 285 PVYFLGVGEGIND---------LEPFVA 303
           P+  +GVG+ + D         LEP++A
Sbjct: 405 PLALVGVGQRVPDDLLPGTPEALEPWLA 432


>gi|187926253|ref|YP_001892598.1| GTP-binding signal recognition particle SRP54 G- domain [Ralstonia
           pickettii 12J]
 gi|241665741|ref|YP_002984100.1| flagellar biosynthesis regulator FlhF [Ralstonia pickettii 12D]
 gi|187728007|gb|ACD29171.1| GTP-binding signal recognition particle SRP54 G- domain [Ralstonia
           pickettii 12J]
 gi|240867768|gb|ACS65428.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Ralstonia pickettii 12D]
          Length = 632

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 85/185 (45%), Gaps = 14/185 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  +     +V L + D++R    +QL+I+         
Sbjct: 402 VFALMGPTGVGKTTTTAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILGVSVH 461

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +   D + LA    ++       V++IDT G    +      + + + +L  + P   
Sbjct: 462 AVKDAQDLS-LALNDLREKH-----VVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIK 511

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L +L+A +    L +V   +  A   G I+TK+D  A  G  + +++  ++P++++ 
Sbjct: 512 R--LLLLNAASNGKTLDEVVGAYRDANLAGCILTKIDEAASVGHAMDVMIRRRLPLHYVS 569

Query: 291 VGEGI 295
            G+ +
Sbjct: 570 YGQRV 574


>gi|300697967|ref|YP_003748628.1| flagellar biosynthetic protein flhF [Ralstonia solanacearum
           CFBP2957]
 gi|299074691|emb|CBJ54248.1| putative flagellar biosynthetic protein flhF [Ralstonia
           solanacearum CFBP2957]
          Length = 610

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 14/187 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  +     +V L + D++R    +QL+I+        V
Sbjct: 384 VFALMGPTGVGKTTTTAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILG---V 440

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  L+         ++  V++IDT G    +      + + + +L  + P   
Sbjct: 441 TVHAVKDAQDLS---LALGDLREKHVVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIK 493

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L +L++T+    L +V   +  A   G I+TK+D  A  G  + +++ +++P++++ 
Sbjct: 494 R--LLLLNSTSNGKTLDEVVSAYRDANLAGCILTKIDEAASVGHAMDVMIRNRLPLHYVS 551

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 552 YGQRVPE 558


>gi|242280060|ref|YP_002992189.1| flagellar biosynthesis protein FlhF [Desulfovibrio salexigens DSM
           2638]
 gi|242122954|gb|ACS80650.1| flagellar biosynthesis protein FlhF, putative [Desulfovibrio
           salexigens DSM 2638]
          Length = 362

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 25/203 (12%)

Query: 116 VVGVNGVGKTTVIGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           + G +G GKT+ I +L+  +K  +   ++ LA+ D  +      L+ +AD +  +F    
Sbjct: 160 LAGPHGAGKTSTIIRLALKEKKENPTARICLASADQGQGKGRLVLRHYADLSGLEFRELA 219

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP--- 230
              D A L  E+      +K D + ID  G        + G  ++   L     H P   
Sbjct: 220 SREDFAKLIGES------RKFDRVFIDLPG--------LGGNAELEGWLTACGMHGPCDL 265

Query: 231 --HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
             H VL    A     A   ++ F + +    LI TK+D     G L+       +PV  
Sbjct: 266 AVHLVLNPYYAPAQYTAF--LKKFQS-SKVKSLIWTKLDEACNYGALVNTSYESGLPVSL 322

Query: 289 LGVGEGI-NDLEPFVAKDFSAVI 310
           L  G G+ N ++P   KDF  ++
Sbjct: 323 LSYGSGLRNSMQPACEKDFWRLV 345


>gi|289208352|ref|YP_003460418.1| flagellar biosynthetic protein FlhF [Thioalkalivibrio sp. K90mix]
 gi|288943983|gb|ADC71682.1| flagellar biosynthetic protein FlhF [Thioalkalivibrio sp. K90mix]
          Length = 424

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 31/216 (14%)

Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ +VG  GVGKTT + +++ +++   G   V L   DT R  A  QL+ +A        
Sbjct: 179 VLALVGPTGVGKTTTLARIALRQIRRMGADSVTLVTLDTQRIGATRQLQAFAQMAGVSLR 238

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN---NSILMAGIGKMIRVLKRLDP 227
             +   +   +A      A+A+   +++ DTAG+  +   +  L AG    +R    L  
Sbjct: 239 VLQNPRELRDMA------ARAEDGHLILADTAGQAPSVVGDESLFAGWPDRVRCESWL-- 290

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
                   V+ ATT  +ALR+V           L++TK+D   + G  + +++   + + 
Sbjct: 291 --------VVSATTQASALRRVLDAFRKTEPAALVLTKLDEAEQLGETLSVLLDQHLGLT 342

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLDY---GEEK 320
           F+  G+ I       A+DF  V TG L     GEE+
Sbjct: 343 FVSDGQRI-------AEDFHRVETGDLTRRALGEER 371


>gi|134094537|ref|YP_001099612.1| flagellar biosynthesis regulator FlhF [Herminiimonas
           arsenicoxydans]
 gi|133738440|emb|CAL61485.1| putative flagellar biosynthesis regulator FlhF [Herminiimonas
           arsenicoxydans]
          Length = 423

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 26/193 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT   KL+ +  M     K+ L   D +R    +QL+I+        V
Sbjct: 196 VYALVGPTGVGKTTTTAKLAARCVMRHGPGKLALITTDGYRIGGYEQLRIYGKILG---V 252

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI------LMAGIGKMIRVLKR 224
                 D A L   A  + + K    ++IDT G    +++      +++G G  +   KR
Sbjct: 253 MVHSVKDEADLRI-ALDELKGKHT--VLIDTVGVSQRDNMVAEQIAMLSGAGSQV---KR 306

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           L           L+AT+    L +V   +   G  G I+TK+D  A  G  + +V+  K+
Sbjct: 307 L---------LCLNATSTGETLNEVARSYMGDGLAGCILTKLDEAATIGSALDVVIRQKL 357

Query: 285 PVYFLGVGEGIND 297
            +Y++  G+ + +
Sbjct: 358 NLYYVANGQRVPE 370


>gi|83749401|ref|ZP_00946395.1| Probable flagellar biosynthesis protein (flhF) [Ralstonia
           solanacearum UW551]
 gi|207738853|ref|YP_002257246.1| flagellar biosynthetic protein flhf [Ralstonia solanacearum
           IPO1609]
 gi|83723928|gb|EAP71112.1| Probable flagellar biosynthesis protein (flhF) [Ralstonia
           solanacearum UW551]
 gi|206592223|emb|CAQ59129.1| flagellar biosynthetic protein flhf [Ralstonia solanacearum
           IPO1609]
          Length = 610

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 14/187 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  +     +V L + D++R    +QL+I+        V
Sbjct: 384 VFALMGPTGVGKTTTTAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILG---V 440

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DA  L+         ++  V++IDT G    +      + + + +L  + P   
Sbjct: 441 TVHAVKDAQDLS---LALGDLREKHVVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIK 493

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L +L++T+    L +V   +  A   G I+TK+D  A  G  + +++ +++P++++ 
Sbjct: 494 R--LLLLNSTSNGKTLDEVVSAYRDANLAGCILTKIDEAASVGHAMDVMIRNRLPLHYVS 551

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 552 YGQRVPE 558


>gi|290889934|ref|ZP_06553021.1| hypothetical protein AWRIB429_0411 [Oenococcus oeni AWRIB429]
 gi|290480544|gb|EFD89181.1| hypothetical protein AWRIB429_0411 [Oenococcus oeni AWRIB429]
          Length = 198

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 9/86 (10%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH--- 109
           LI +D+G  +A KI  EL  +   K+ S ++ + +   +I K++    +  N + +    
Sbjct: 115 LIAADVGFEMALKISNELQDEVRLKNASSKKDVQNT--IIEKLVNVYDQAGNGENNEMLF 172

Query: 110 ----RPHVILVVGVNGVGKTTVIGKL 131
               +P V L VGVNGVGKTT IGK+
Sbjct: 173 AEAGQPSVFLFVGVNGVGKTTTIGKM 198


>gi|293385100|ref|ZP_06630926.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis R712]
 gi|293389073|ref|ZP_06633545.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis S613]
 gi|291077577|gb|EFE14941.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis R712]
 gi|291081541|gb|EFE18504.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis S613]
          Length = 271

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 8/101 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSH 109
           LI +D+G   + KI E L  ++  K  +V++     + +I KM+    +     N   + 
Sbjct: 173 LIGADVGFDTSLKITEAL--RQEVKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINL 230

Query: 110 RPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           +P+   VIL VGVNGVGKTT IGKL+ +    G KV++AA 
Sbjct: 231 QPNGLTVILFVGVNGVGKTTSIGKLAHQYKLEGKKVLMAAA 271


>gi|291613027|ref|YP_003523184.1| flagellar biosynthetic protein FlhF [Sideroxydans lithotrophicus
           ES-1]
 gi|291583139|gb|ADE10797.1| flagellar biosynthetic protein FlhF [Sideroxydans lithotrophicus
           ES-1]
          Length = 438

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 16/194 (8%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V  +VG  GVGKTT   K++ +  +     KV L   D++R  A +QLKI+  
Sbjct: 208 DVVARGGVYALVGPTGVGKTTTTAKMAARAVVRYGADKVALVTTDSYRIGAHEQLKIYG- 266

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +     V +   ++   L     K        +++IDT G    +S       ++    +
Sbjct: 267 KILGVSVHAVRDTEDLKLTLSGLKHKH-----LVLIDTMGVGQRDS-------RVAEQAQ 314

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             D      +L +L+AT+    L  V   +   G  G I TK+D     G ++ +VV HK
Sbjct: 315 MFDTVGVQRLL-LLNATSSGGTLEDVVKMYGGTGVIGCIPTKLDEAVTLGTVLDVVVRHK 373

Query: 284 IPVYFLGVGEGIND 297
           + ++++  G+ + +
Sbjct: 374 LTMHYVASGQRVPE 387


>gi|74055049|gb|AAZ95854.1| FlhF [Aeromonas hydrophila]
          Length = 472

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 117/254 (46%), Gaps = 32/254 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-- 134
           +D+S+ + +  ++E++   L    K    D   +   + ++G  GVGK T I KL+ +  
Sbjct: 223 EDMSIHQAMAQLAEVLTAQL----KISEDDILRQGGAVALLGPTGVGKATTIAKLAARFA 278

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           M     +V L   D +R  A +QL+ +               DA  LA   +   Q +  
Sbjct: 279 MKYGAEQVALITTDNYRIGAHEQLQTYGRIMGCPVRQVR---DAEELANALY---QFRHR 332

Query: 195 DVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHAPHSVLQ-----VLDATTGQNALRQ 248
            +++IDTAG           +G+  IR+ ++LD    ++ ++     V+ AT+ +  +++
Sbjct: 333 RLVLIDTAG-----------VGQRDIRLTEQLDTLVKNAKVRIRSYLVMSATSQRRVMQE 381

Query: 249 -VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306
            V+ F  +   +G I+TK+D +   G +I + + + +P+ ++  G+ +  D++   A   
Sbjct: 382 AVDHFRRIP-LSGCILTKLDESLNLGEVINVCIQNALPISYITDGQRVPEDIQVANAAQL 440

Query: 307 SAVITGCLDYGEEK 320
                G L+   E+
Sbjct: 441 VGAAMGSLERETEE 454


>gi|213421009|ref|ZP_03354075.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 150

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 13/150 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +D V+E L ++   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V+      Q  +  V SEL+  M    ++  N   +  P V+L+ G+ G GKTT +GK
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAM-GEENQTLNLA-AQPPAVVLMAGLQGAGKTTSVGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLK 159
           L K + +    KV++ + D +R AAI QL+
Sbjct: 120 LGKFLREKHKKKVLVVSADVYRPAAIKQLE 149


>gi|157813198|gb|ABV81344.1| putative signal recognition particle protein [Cypridopsis vidua]
          Length = 101

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +I+TK+DG A+GGG +  V     P+ F+G GE I+D E F  + F + + G  D
Sbjct: 12  VIITKLDGHAKGGGALSAVAATMSPIIFIGTGEHIDDFEVFKVRPFVSKLLGMGD 66


>gi|145642242|ref|ZP_01797808.1| ABC transporter ATP-binding protein [Haemophilus influenzae R3021]
 gi|145273047|gb|EDK12927.1| ABC transporter ATP-binding protein [Haemophilus influenzae
           22.4-21]
          Length = 470

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 179 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 233

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + LTK Y       R L D         +  S P       +  ++ ++G N
Sbjct: 234 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 273

Query: 121 GVGKTTVIGKLS-KKMSDA-----GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+     G  V+LA+ D FR A  D+  +W + ++   + +  
Sbjct: 274 GAGKSTLFRMLSGQEQPDSGSVTMGETVVLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 333

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 334 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 377


>gi|330901773|gb|EGH33192.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 221

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 22/181 (12%)

Query: 123 GKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GKTT + KL+ +  +      + L + D+FR  A +QLK      +      + G     
Sbjct: 13  GKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVTHIDPGQSLV- 71

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI----GKMIRVLKRLDPHAPHSVLQV 236
              +A +    K+V  ++IDTAG   ++  L   +    G+ I+    L          V
Sbjct: 72  ---QALEPLLRKRV--VLIDTAGLQASDPALRMQLESLAGRGIKSRNYL----------V 116

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           L  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L  G  I 
Sbjct: 117 LATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIP 176

Query: 297 D 297
           D
Sbjct: 177 D 177


>gi|167946939|ref|ZP_02534013.1| cell division protein FtsY [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 52

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 29/43 (67%)

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           TK+DGTA+GG +  I    K+P+ F+GVGE + DL  F  ++F
Sbjct: 1   TKLDGTAKGGVIFAIGDKLKLPIRFIGVGESVEDLREFNPQEF 43


>gi|167623394|ref|YP_001673688.1| flagellar biosynthesis regulator FlhF [Shewanella halifaxensis
           HAW-EB4]
 gi|167353416|gb|ABZ76029.1| GTP-binding signal recognition particle SRP54 G- domain [Shewanella
           halifaxensis HAW-EB4]
          Length = 470

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 109/251 (43%), Gaps = 28/251 (11%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           +G  +  K++E   +   AK +S     Y  +EL+  +   L+   +    D   +  V+
Sbjct: 197 VGAMLESKLLEAEFSPAIAKKLSSLSEHYSPAELVASLPRSLANMLDNQGDDIVRQGGVV 256

Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
             VG  GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +
Sbjct: 257 AFVGPTGVGKTTTVAKLAARFAAYHGSDQVALITTDHYRIGAFEQLATYGKIMGCPVKQA 316

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              S+   + Y      Q +   +++IDTAG    +           R+ ++LD  A +S
Sbjct: 317 HDFSELEQILY------QFRNRKLVLIDTAGMGQRDQ----------RLFQQLDSLAANS 360

Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            L +      + TGQ  + +  V+ F  +   +G ++TK+D +      + +++   +P+
Sbjct: 361 RLPIRSYLVMSATGQRRVLEDAVKQFTRIP-LSGAVLTKLDESISLAPALSVLIQSGLPL 419

Query: 287 YFLGVGEGIND 297
            ++  G+ + +
Sbjct: 420 SYVTDGQRVPE 430


>gi|152978654|ref|YP_001344283.1| putative ABC transporter ATP-binding protein [Actinobacillus
           succinogenes 130Z]
 gi|150840377|gb|ABR74348.1| ABC transporter related [Actinobacillus succinogenes 130Z]
          Length = 560

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 95/224 (42%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 269 ARQKSIEKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 323

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E LTK Y       R L D         +  S P       +  ++ ++G N
Sbjct: 324 LGDKVIEVEHLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 363

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G  VM     LA+ D FR +  D+  +W + ++   + +  
Sbjct: 364 GAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTIG 423

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K V  L     GRLH   +L  G
Sbjct: 424 NFEIPSRAYVGRFNFKGVDQQKLVGELSGGERGRLHLAKLLQRG 467


>gi|309778950|ref|ZP_07673720.1| flagellar biosynthesis protein FlhF [Ralstonia sp. 5_7_47FAA]
 gi|308922297|gb|EFP67924.1| flagellar biosynthesis protein FlhF [Ralstonia sp. 5_7_47FAA]
          Length = 639

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 85/185 (45%), Gaps = 14/185 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  +     +V L + D++R    +QL+I+         
Sbjct: 409 VFALMGPTGVGKTTTTAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILGVSVH 468

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +   D + LA    ++       V++IDT G    +      + + + +L  + P   
Sbjct: 469 AVKDAQDLS-LALNDLREKH-----VVLIDTIGMSQRDR----AVSEQMAMLHAVGPSIK 518

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L +L+A +    L +V   +  A   G I+TK+D  A  G  + +++  ++P++++ 
Sbjct: 519 R--LLLLNAASNGKTLDEVVGAYRDANLAGCILTKIDEAASVGHAMDVMIRRRLPLHYVS 576

Query: 291 VGEGI 295
            G+ +
Sbjct: 577 YGQRV 581


>gi|33151470|ref|NP_872823.1| putative ABC transporter ATP-binding protein [Haemophilus ducreyi
           35000HP]
 gi|33147690|gb|AAP95212.1| ABC transporter ATP-binding protein [Haemophilus ducreyi 35000HP]
          Length = 556

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 95/224 (42%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + L K Y       R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVQHLMKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDA-----GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS K+  D+     G  V LA+ D FR A  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGKEQPDSGSIMLGETVTLASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|16273171|ref|NP_439408.1| putative ABC transporter ATP-binding protein [Haemophilus
           influenzae Rd KW20]
 gi|68250216|ref|YP_249328.1| putative ABC transporter ATP-binding protein [Haemophilus
           influenzae 86-028NP]
 gi|145629314|ref|ZP_01785113.1| ABC transporter ATP-binding protein [Haemophilus influenzae
           22.1-21]
 gi|145638825|ref|ZP_01794433.1| ABC transporter ATP-binding protein [Haemophilus influenzae PittII]
 gi|148825845|ref|YP_001290598.1| putative ABC transporter ATP-binding protein [Haemophilus
           influenzae PittEE]
 gi|229846844|ref|ZP_04466951.1| putative ABC transporter ATP-binding protein [Haemophilus
           influenzae 7P49H1]
 gi|260581170|ref|ZP_05848990.1| ABC transporter ATP-binding protein [Haemophilus influenzae RdAW]
 gi|1176478|sp|P45127|Y1252_HAEIN RecName: Full=Uncharacterized ABC transporter ATP-binding protein
           HI_1252
 gi|1574184|gb|AAC22902.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd
           KW20]
 gi|68058415|gb|AAX88668.1| ABC transporter ATP-binding protein [Haemophilus influenzae
           86-028NP]
 gi|144978817|gb|EDJ88540.1| ABC transporter ATP-binding protein [Haemophilus influenzae
           22.1-21]
 gi|145271797|gb|EDK11706.1| ABC transporter ATP-binding protein [Haemophilus influenzae PittII]
 gi|148716005|gb|ABQ98215.1| hypothetical protein CGSHiEE_04020 [Haemophilus influenzae PittEE]
 gi|229810333|gb|EEP46052.1| putative ABC transporter ATP-binding protein [Haemophilus
           influenzae 7P49H1]
 gi|260092198|gb|EEW76141.1| ABC transporter ATP-binding protein [Haemophilus influenzae RdAW]
 gi|309750808|gb|ADO80792.1| Probable ABC transport system, ATP-binding protein [Haemophilus
           influenzae R2866]
          Length = 556

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + LTK Y       R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V+LA+ D FR +  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSVTMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|221214211|ref|ZP_03587183.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans CGD1]
 gi|221165866|gb|EED98340.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans CGD1]
          Length = 597

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 33/209 (15%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+      
Sbjct: 349 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG- 407

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V      DA  L+      ++ +   +++IDT G    +      +   I +L     
Sbjct: 408 --VPVHAVKDAGDLS---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLH--GA 456

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGT-------------------TGLIMTKMDG 268
             P   L +L+AT+  + L +V   +  AG                     G I+TK+D 
Sbjct: 457 STPVQRLLLLNATSHGDTLNEVVQAYRSAGDRADLAGPDLAGPDLAGPDLAGCILTKLDE 516

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGIND 297
               GG +  V+ +K+PV+++  G+ + +
Sbjct: 517 ATHLGGALDTVIRYKLPVHYVSTGQKVPE 545


>gi|307246200|ref|ZP_07528281.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307255180|ref|ZP_07536998.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259618|ref|ZP_07541342.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852809|gb|EFM85033.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862053|gb|EFM94029.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866263|gb|EFM98127.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 548

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 257 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   L+K Y       R L D                N  FS  +  ++ ++G 
Sbjct: 312 LGDKVIEVSNLSKSYG-----DRTLID----------------NLSFSIPKGAIVGIIGA 350

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS ++  D+G  VM     LA+ D FR +  D+  +W + ++   + + 
Sbjct: 351 NGAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTI 410

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 411 GNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 455


>gi|984323|gb|AAB17124.1| signal recognition particle 54 kDa subunit [Rattus norvegicus]
          Length = 70

 Score = 45.1 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 33/70 (47%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F  S  
Sbjct: 1   MFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYT 60

Query: 175 GSDAAALAYE 184
             D   +A E
Sbjct: 61  EMDPVIIASE 70


>gi|78355428|ref|YP_386877.1| flagellar biosynthesis protein FlhF [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78217833|gb|ABB37182.1| flagellar biosynthesis protein FlhF, putative [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 362

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 30/252 (11%)

Query: 60  VAVAQKIVEELLTKRYAKD---VSVQRVLYDVSELIHKMLMPLSK--PF-NWDFSHRPHV 113
           +A  Q++  E L +   +D   +++ R L     L   +L PLS   P   W  +  P  
Sbjct: 101 LAPRQRVALEYLEREGVEDNVILALYRRLRGAPSL--SVLEPLSAVVPVKGWGGADWPQK 158

Query: 114 I-LVVGVNGVGKTTVIGK--LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           + +V G +GVGKT+ + +  L+ +  +AG+++ +   D+ R +    L+ +A+     + 
Sbjct: 159 MQIVCGPSGVGKTSAVVRMALALRRQNAGVRICVLNADSQRGSGRMVLRHYAELCGMGYH 218

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA--GRLHNNSILMAGIGKMIRVLKRLDPH 228
                +DAAAL  E          D +++DT   GR      L+   G     L  L+  
Sbjct: 219 EISGPADAAALLGEL------DGYDKILVDTPVPGRGATLRSLLEETG-----LDVLEQQ 267

Query: 229 APHSVLQVLDATTGQNALRQVEMF---HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P +V  V+    G     Q+  F   +      GL+ TK+D     G LI +     +P
Sbjct: 268 VPAAVQLVMSPLYGDA---QISFFLRQYECGLPCGLVWTKLDEACNFGALINVPAASGLP 324

Query: 286 VYFLGVGEGIND 297
           V  L  G G+ +
Sbjct: 325 VTALSFGSGLKN 336


>gi|152980692|ref|YP_001353775.1| flagellar biosynthesis regulator FlhF [Janthinobacterium sp.
           Marseille]
 gi|151280769|gb|ABR89179.1| FlhF flagellar biosynthesis protein [Janthinobacterium sp.
           Marseille]
          Length = 421

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT   KL+ +  M     K+ L   D +R    +QL+I+  +     V
Sbjct: 194 VYALVGPTGVGKTTTTAKLAARCVMRHGPSKLALITTDGYRIGGYEQLRIYG-KILGVMV 252

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHA 229
            S        +A +  K      +D + +    ++  + I M  G G  +   KRL    
Sbjct: 253 HSVKDEADLRIALDELKGKHTVLIDTVGVSQRDQMVADQIAMLTGAGDQV---KRL---- 305

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                  L+AT+    L +V   +   G  G I+TK+D  A  G  + +V+  K+ +Y++
Sbjct: 306 -----LCLNATSTGETLNEVVRSYMGDGLAGCILTKLDEAATIGSALDVVIRQKLNLYYV 360

Query: 290 GVGEGIND 297
             G+ + +
Sbjct: 361 ANGQRVPE 368


>gi|307257348|ref|ZP_07539118.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864198|gb|EFM96111.1| Uncharacterized ABC transporter ATP-binding protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 556

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   L+K Y       R L D                N  FS  +  ++ ++G 
Sbjct: 320 LGDKVIEVSNLSKSYG-----DRTLID----------------NLSFSIPKGAIVGIIGA 358

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS ++  D+G  VM     LA+ D FR +  D+  +W + ++   + + 
Sbjct: 359 NGAGKSTLFRMLSGQEQPDSGSIVMGETVVLASVDQFRDSMDDKKTVWEEVSNGQDILTI 418

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 419 GNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|221202385|ref|ZP_03575418.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans
           CGD2M]
 gi|221208976|ref|ZP_03581972.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans CGD2]
 gi|221171098|gb|EEE03549.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans CGD2]
 gi|221177799|gb|EEE10213.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans
           CGD2M]
          Length = 590

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 33/209 (15%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+      
Sbjct: 342 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG- 400

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             V      DA  L+      ++ +   +++IDT G    +      +   I +L     
Sbjct: 401 --VPVHAVKDAGDLS---LALSELRNKHIVLIDTIGMSQRDR----AVSDQIAMLH--GA 449

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGT-------------------TGLIMTKMDG 268
             P   L +L+AT+  + L +V   +  AG                     G I+TK+D 
Sbjct: 450 STPVQRLLLLNATSHGDTLNEVVQAYRSAGDRADLAGPDLAGPDLAGPDLAGCILTKLDE 509

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGIND 297
               GG +  V+ +K+PV+++  G+ + +
Sbjct: 510 ATHLGGALDTVIRYKLPVHYVSTGQKVPE 538


>gi|254422095|ref|ZP_05035813.1| CobW/P47K family protein [Synechococcus sp. PCC 7335]
 gi|196189584|gb|EDX84548.1| CobW/P47K family protein [Synechococcus sp. PCC 7335]
          Length = 334

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++  +       GLKV +   + F    ID QL + +D+T  +   
Sbjct: 25  VTIITGFLGSGKTTLLNHILNNAE--GLKVAVLVNE-FGDINIDTQLLVSSDQTMVELSN 81

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I        Y+  ++ +  ++D L+I+T G      I+M  +G  ++ L RLD 
Sbjct: 82  GCICCTINESLVDAVYQVLEREE--RIDYLVIETTGLADPLPIMMTFVGTSLKDLTRLD- 138

Query: 228 HAPHSVLQVLDA 239
               SV+ V+DA
Sbjct: 139 ----SVIGVVDA 146


>gi|83647841|ref|YP_436276.1| flagellar GTP-binding protein [Hahella chejuensis KCTC 2396]
 gi|83635884|gb|ABC31851.1| Flagellar GTP-binding protein [Hahella chejuensis KCTC 2396]
          Length = 432

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 16/200 (8%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQL 158
           K  N +  H+  V  ++G  G GKTT + KL+ +  +     K+ L   D FR A+  QL
Sbjct: 206 KAENEELIHQRGVCALLGPTGSGKTTTLAKLAARFVVHYGAEKLALITTDRFRVASQQQL 265

Query: 159 KIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           + +    +   +V  E  S    L   A K+       ++++DTAG L           K
Sbjct: 266 QSFGRLLNVPVYVVDEENSLDDLLDRLANKR-------LVLVDTAG-LTPQDPNWERQQK 317

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            ++V +    H   + L VL A      ++    ++ +   +G IMTK+D     G ++ 
Sbjct: 318 DLKVTR----HRIRNYL-VLSAVNQPQVMKSTYHYYKMLELSGCIMTKLDEAFSLGEVLS 372

Query: 278 IVVTHKIPVYFLGVGEGIND 297
           + + +++PV ++  G+ I D
Sbjct: 373 MAILNRLPVAYVTDGQKIPD 392


>gi|261494026|ref|ZP_05990529.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496214|ref|ZP_05992620.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308166|gb|EEY09463.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310192|gb|EEY11392.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 548

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S        ++ S        R E  +L I    G  
Sbjct: 257 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + LTK Y      + ++ D+S  I K                  ++ ++G N
Sbjct: 312 LGDKVIEVQNLTKSYGD----RTLIDDLSFAIPKGA----------------IVGIIGAN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS K+  D+G       V++A+ D FR A  D+  +W + ++   + +  
Sbjct: 352 GAGKSTLFRMLSGKEQPDSGSIVLGETVVMASVDQFRDAMDDKKTVWEEVSNGQDILTIG 411

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 412 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 455


>gi|254361772|ref|ZP_04977907.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Mannheimia haemolytica PHL213]
 gi|153093307|gb|EDN74303.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Mannheimia haemolytica PHL213]
          Length = 556

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S        ++ S        R E  +L I    G  
Sbjct: 265 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + LTK Y      + ++ D+S  I K                  ++ ++G N
Sbjct: 320 LGDKVIEVQNLTKSYGD----RTLIDDLSFAIPKGA----------------IVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS K+  D+G       V++A+ D FR A  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGKEQPDSGSIVLGETVVMASVDQFRDAMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|113460518|ref|YP_718582.1| putative ABC transporter ATP-binding protein [Haemophilus somnus
           129PT]
 gi|170718799|ref|YP_001783980.1| ABC transporter ATP-binding protein [Haemophilus somnus 2336]
 gi|112822561|gb|ABI24650.1| ABC transporter, ATP-binding protein [Haemophilus somnus 129PT]
 gi|168826928|gb|ACA32299.1| ABC transporter related [Haemophilus somnus 2336]
          Length = 556

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 97/226 (42%), Gaps = 40/226 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S        ++ SS       R E  +L I    G  
Sbjct: 265 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSSEYQK---RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E + LTK Y       R L D                N  FS  +  ++ ++G 
Sbjct: 320 LGDKVIEVQNLTKSYG-----DRTLID----------------NLSFSIPKGAIVGIIGA 358

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           NG GK+T+   LS ++ +D+G       V++A+ D FR A  D+  +W +  S      +
Sbjct: 359 NGAGKSTLFRMLSGQEQADSGSITLGETVVMASVDQFRDAMDDKKTVW-EEVSGGLDIMK 417

Query: 174 IGS-DAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           IG+ +  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 418 IGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQVG 463


>gi|153001437|ref|YP_001367118.1| flagellar biosynthesis regulator FlhF [Shewanella baltica OS185]
 gi|304409944|ref|ZP_07391563.1| flagellar biosynthetic protein FlhF [Shewanella baltica OS183]
 gi|307302343|ref|ZP_07582101.1| flagellar biosynthetic protein FlhF [Shewanella baltica BA175]
 gi|151366055|gb|ABS09055.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Shewanella baltica OS185]
 gi|304351353|gb|EFM15752.1| flagellar biosynthetic protein FlhF [Shewanella baltica OS183]
 gi|306914381|gb|EFN44802.1| flagellar biosynthetic protein FlhF [Shewanella baltica BA175]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 119/275 (43%), Gaps = 29/275 (10%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           +G  +  K++E   +   A  ++     Y  +EL+  +   L+   +    D   +  V+
Sbjct: 187 VGAMLEAKLLEAEFSPAVANKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVV 246

Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +VG  GVGKTT + KL+ + +       V L   D +R  A +QL  +          +
Sbjct: 247 ALVGPTGVGKTTSLAKLAARFAAHHGAEHVALITTDHYRIGAYEQLATYGKIMGCPVKQA 306

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              ++   + Y      Q +   +++IDTAG    +          +R+ ++LD    +S
Sbjct: 307 HDLNELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 350

Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            + +      + TGQ  + Q  V  F  +   +G+++TK+D +    G + +++ + +P+
Sbjct: 351 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGVVLTKLDESVSLAGALSVLIQNGLPL 409

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320
            ++  G+ +  D++     D +      LD  E++
Sbjct: 410 SYVTDGQRVPEDMKVADTLDLAQQALAALDSTEQQ 444


>gi|126654835|ref|ZP_01726369.1| Cobalamin synthesis protein/P47K [Cyanothece sp. CCY0110]
 gi|126623570|gb|EAZ94274.1| Cobalamin synthesis protein/P47K [Cyanothece sp. CCY0110]
          Length = 339

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 16/161 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRT----SA 167
           V ++ G  G GKTT++  +    ++  LKV +   + F    ID QL +  D      S 
Sbjct: 22  VTIITGFLGSGKTTLVNHILT--NNQQLKVAVLVNE-FGDIDIDSQLLVSIDENMVALSN 78

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I  D  A  Y+ F+Q     +D LI++T G      I +  +   +R + RLD 
Sbjct: 79  GCICCTINDDLVAAVYQVFEQG--DNIDYLILETTGVADPLPIALTFLNTELRDMTRLD- 135

Query: 228 HAPHSVLQVLDATTGQNALRQVE-MFHAVAGTTGLIMTKMD 267
               S+L V+DA T  +   Q E   H +     +++ K D
Sbjct: 136 ----SILTVVDAETFTSEHFQSEAALHQITYGDIILLNKTD 172


>gi|126175113|ref|YP_001051262.1| flagellar biosynthesis regulator FlhF [Shewanella baltica OS155]
 gi|125998318|gb|ABN62393.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella baltica OS155]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 119/275 (43%), Gaps = 29/275 (10%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           +G  +  K++E   +   A  ++     Y  +EL+  +   L+   +    D   +  V+
Sbjct: 187 VGAMLEAKLLEAEFSPAVANKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVV 246

Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +VG  GVGKTT + KL+ + +       V L   D +R  A +QL  +          +
Sbjct: 247 ALVGPTGVGKTTSLAKLAARFAAHHGAEHVALITTDHYRIGAYEQLATYGKIMGCPVKQA 306

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              ++   + Y      Q +   +++IDTAG    +          +R+ ++LD    +S
Sbjct: 307 HDLNELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 350

Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            + +      + TGQ  + Q  V  F  +   +G+++TK+D +    G + +++ + +P+
Sbjct: 351 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGVVLTKLDESVSLAGALSVLIQNGLPL 409

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320
            ++  G+ +  D++     D +      LD  E++
Sbjct: 410 SYVTDGQRVPEDMKVADTLDLAQQALAALDSTEQQ 444


>gi|160876162|ref|YP_001555478.1| flagellar biosynthesis regulator FlhF [Shewanella baltica OS195]
 gi|217972631|ref|YP_002357382.1| flagellar biosynthesis regulator FlhF [Shewanella baltica OS223]
 gi|160861684|gb|ABX50218.1| GTP-binding signal recognition particle SRP54 G- domain [Shewanella
           baltica OS195]
 gi|217497766|gb|ACK45959.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Shewanella baltica OS223]
 gi|315268358|gb|ADT95211.1| flagellar biosynthetic protein FlhF [Shewanella baltica OS678]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 119/275 (43%), Gaps = 29/275 (10%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           +G  +  K++E   +   A  ++     Y  +EL+  +   L+   +    D   +  V+
Sbjct: 187 VGAMLEAKLLEAEFSPAVANKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVV 246

Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +VG  GVGKTT + KL+ + +       V L   D +R  A +QL  +          +
Sbjct: 247 ALVGPTGVGKTTSLAKLAARFAAHHGAEHVALITTDHYRIGAYEQLATYGKIMGCPVKQA 306

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              ++   + Y      Q +   +++IDTAG    +          +R+ ++LD    +S
Sbjct: 307 HDLNELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 350

Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            + +      + TGQ  + Q  V  F  +   +G+++TK+D +    G + +++ + +P+
Sbjct: 351 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGVVLTKLDESVSLAGALSVLIQNGLPL 409

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320
            ++  G+ +  D++     D +      LD  E++
Sbjct: 410 SYVTDGQRVPEDMKVADTLDLAQQALAALDSTEQQ 444


>gi|224532110|ref|ZP_03672742.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia valaisiana VS116]
 gi|224511575|gb|EEF81981.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia valaisiana VS116]
          Length = 388

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 29/195 (14%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRT 165
           +  V ++VG  GVGKTT I KL+      G    L + +   D +R  A  Q++ + D  
Sbjct: 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIM 232

Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                           A E+FK        +K  D++++DT G+   + + +A + +++ 
Sbjct: 233 G-----------IPVRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLN 281

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278
              R D     +V     +TT  + ++  E+FH  +      +I TK+D T   G LI +
Sbjct: 282 ACGR-DAEFHLAV----SSTTKTSDVK--EIFHQFSPFNYKTVIFTKVDETTCVGNLISL 334

Query: 279 VVTHKIPVYFLGVGE 293
           +   K  V ++  G+
Sbjct: 335 IYEMKKVVSYVTDGQ 349


>gi|86157783|ref|YP_464568.1| GTP-binding signal recognition particle [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774294|gb|ABC81131.1| GTP-binding signal recognition particle SRP54, G-domain protein
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 378

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 20/217 (9%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLK 141
           R    V +L+ + L+P   P+  D      VI  VG  GVGKTT + K+ ++ + +   +
Sbjct: 160 RAWRAVKDLLGERLVPCRAPWLHDGRR---VIAAVGPTGVGKTTTLAKVAARALLETRKR 216

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           V     DT+R    +QL  +A        V  + G    AL        +   VD++++D
Sbjct: 217 VAFVTVDTYRLGGAEQLTRYAGIMEVPVLVARDRGELGRAL-------ERLSDVDLVLVD 269

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAG  H +   +     ++R + R+  H        + A TG   L  V   +       
Sbjct: 270 TAG--HASVEDVERQAALVRSIPRVQLH------LTVSAATGALELAAVADRYRALAPDR 321

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           L++TK+D  A  G ++   V    P+  +  G+ + +
Sbjct: 322 LVLTKLDEAAGPGSVLSAAVRVCRPIACVTDGQRVPE 358


>gi|134300230|ref|YP_001113726.1| flagellar biosynthesis regulator FlhF [Desulfotomaculum reducens
           MI-1]
 gi|134052930|gb|ABO50901.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 405

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 118/263 (44%), Gaps = 32/263 (12%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           D V +   + L+  DI  AVA+ +++  L K   KD     ++  V  LI++    L  P
Sbjct: 143 DQVYQRWLEKLLEMDIQPAVAKTLLDAALLK--IKDSEALDMVELV--LINQTAELLKAP 198

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGK-------LSKKMSDAGLKVMLAAGDTFRSAAI 155
           +  + + R   +  +G  GVGKTT + K       L KK       V L    T+R  + 
Sbjct: 199 YKGEKNSR--FMTFIGQPGVGKTTTLTKLATKYQLLEKK------NVALITLYTYRYGST 250

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           D LKI+ D      +  E+      L+ +A ++   K  D + IDT GR  NN+  +  +
Sbjct: 251 DHLKIYGDNLD---LPVEVVMTPTELS-QAIEKHSNK--DYIFIDTVGRSSNNTGQVLEL 304

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATT-GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              + V+      + + +  VL+A+T  ++  R +  F  +      I TK+D TA  G 
Sbjct: 305 KSFLEVIP-----SENDIFLVLNASTKDRDLFRTIHDFR-ITSFNKFIFTKVDETATLGS 358

Query: 275 LIPIVVTHKIPVYFLGVGEGIND 297
           ++ +V    +P+ +   G+ I D
Sbjct: 359 MLNVVGKTGLPIAYYTDGQSIPD 381


>gi|114562375|ref|YP_749888.1| flagellar biosynthesis regulator FlhF [Shewanella frigidimarina
           NCIMB 400]
 gi|114333668|gb|ABI71050.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella frigidimarina NCIMB 400]
          Length = 461

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 128/297 (43%), Gaps = 44/297 (14%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E ++ +R L     S+ +K ++  TD + +          LE  LI ++   AVA K+  
Sbjct: 161 EEMASLRNLLTHQVSSLMKDQKKRTDPVGAM---------LESKLIAAEFSPAVAAKLAG 211

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
             L++ Y     V+ +   ++ L+             D   R  V+  VG  GVGKTT +
Sbjct: 212 --LSQHYTPADLVRALPQSLANLLDNQ--------GDDIVKRGGVVAFVGPTGVGKTTSL 261

Query: 129 GKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            K++ + +      +V L   D +R  A +QL  +          +   ++   + Y   
Sbjct: 262 AKIAARFAAHHGPEQVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLTELEQILY--- 318

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD----ATTG 242
              Q +   +++IDTAG    +          +R+ ++LD    +S + +      + TG
Sbjct: 319 ---QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANSRIPIRSYLVLSATG 365

Query: 243 QNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           Q  + Q  VE F  +    G I+TK+D +    G + +++ +++P+ ++  G+ + +
Sbjct: 366 QRRVLQDAVEHFKRIP-LAGAILTKLDESVSIAGALSVLIQNELPLSYVTDGQRVPE 421


>gi|33601534|ref|NP_889094.1| flagellar biosynthesis protein [Bordetella bronchiseptica RB50]
 gi|33575970|emb|CAE33049.1| flagellar biosynthesis protein [Bordetella bronchiseptica RB50]
          Length = 790

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 90/198 (45%), Gaps = 33/198 (16%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT + KL+ +    +   +V +   D FR  A++QL+I+        +
Sbjct: 195 VFALVGPTGVGKTTTLAKLAARCVAREGREQVAMLTTDNFRIGALEQLQIYGRLMG---I 251

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMAGIGKMIRVLKR 224
            +    DA  L  +A      +++  ++IDT G      ++   + ++   GK +R L  
Sbjct: 252 PAHSVRDADEL-RDALGSLGNRRI--ILIDTTGISQRDRQVAGQAAMLCNAGKPVRRLL- 307

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG-----TTGLIMTKMDGTARGGGLIPIV 279
                      VL+A +  + L +V   HA          G I+TK+D  +R    +   
Sbjct: 308 -----------VLNAASQGDTLDEVA--HAYRNGVGEDVVGCIITKLDEASRLAPALDTA 354

Query: 280 VTHKIPVYFLGVGEGIND 297
           + H++P++++  G+ + +
Sbjct: 355 IRHRLPIHYVSYGQKVPE 372


>gi|111115095|ref|YP_709713.1| flagellar biosynthesis regulator FlhF [Borrelia afzelii PKo]
 gi|216263765|ref|ZP_03435759.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia afzelii ACA-1]
 gi|110890369|gb|ABH01537.1| flagellar-associated GTP-binding protein [Borrelia afzelii PKo]
 gi|215979809|gb|EEC20631.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia afzelii ACA-1]
          Length = 388

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 29/195 (14%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRT 165
           +  V ++VG  GVGKTT I KL+      G    L + +   D +R  A  Q++ + D  
Sbjct: 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIM 232

Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                           A E+FK        +K  D++++DT G+   + + +A + +++ 
Sbjct: 233 G-----------IPVRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLN 281

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278
              R D     +V     +TT  + ++  E+FH  +      +I TK+D T   G LI +
Sbjct: 282 ACGR-DAEFHLAV----SSTTKTSDVK--EIFHQFSPFNYKTVIFTKVDETTCVGNLISL 334

Query: 279 VVTHKIPVYFLGVGE 293
           +   K  V ++  G+
Sbjct: 335 IYEMKKVVSYVTDGQ 349


>gi|268553693|ref|XP_002634833.1| Hypothetical protein CBG13942 [Caenorhabditis briggsae]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 11/110 (10%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMP--- 98
           E++ D LI  ++    A+KI + +++K   K V     + Q V   V E + ++L P   
Sbjct: 341 EKMRDNLIMKNVAAEPAEKICQSVVSKLEGKVVNNFSRTAQEVRTAVRESLVQLLTPKHR 400

Query: 99  ---LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
              L          RP+VI+  GVNGVGK+T + K++  +++   +V++A
Sbjct: 401 VDILRDVIEAKKEGRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIA 450


>gi|1185064|gb|AAB58973.1| putative [Borrelia burgdorferi]
          Length = 387

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 29/195 (14%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRT 165
           +  V ++VG  GVGKTT I KL+      G    L + +   D +R  A  Q++ + D  
Sbjct: 172 KKRVFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIM 231

Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                           A E+FK        +K  D++++DT G+   + + +A + +++ 
Sbjct: 232 G-----------IPVRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLN 280

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278
              R D     +V     +TT  + ++  E+FH  +      +I TK+D T   G LI +
Sbjct: 281 ACGR-DAEFHLAV----SSTTKTSDVK--EIFHQFSPFNYKTVIFTKVDETTCVGNLISL 333

Query: 279 VVTHKIPVYFLGVGE 293
           +   K  V ++  G+
Sbjct: 334 IYEMKKVVSYVTDGQ 348


>gi|224534267|ref|ZP_03674845.1| flagellar biosynthesis protein FlhF [Borrelia spielmanii A14S]
 gi|224514369|gb|EEF84685.1| flagellar biosynthesis protein FlhF [Borrelia spielmanii A14S]
          Length = 388

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 29/195 (14%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRT 165
           +  V ++VG  GVGKTT I KL+      G    L + +   D +R  A  Q++ + D  
Sbjct: 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIM 232

Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                           A E+FK        +K  D++++DT G+   + + +A + +++ 
Sbjct: 233 G-----------IPVRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLN 281

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278
              R D     +V     +TT  + ++  E+FH  +      +I TK+D T   G LI +
Sbjct: 282 ACGR-DAEFHLAV----SSTTKTSDVK--EIFHQFSPFNYKTVIFTKVDETTCVGNLISL 334

Query: 279 VVTHKIPVYFLGVGE 293
           +   K  V ++  G+
Sbjct: 335 IYEMKKVVSYVTDGQ 349


>gi|51598530|ref|YP_072718.1| flagellar biosynthesis regulator FlhF [Borrelia garinii PBi]
 gi|219684695|ref|ZP_03539638.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia garinii PBr]
 gi|219685763|ref|ZP_03540574.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia garinii Far04]
 gi|51573101|gb|AAU07126.1| flagellar-associated GTP-binding protein [Borrelia garinii PBi]
 gi|219672057|gb|EED29111.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia garinii PBr]
 gi|219672702|gb|EED29730.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia garinii Far04]
          Length = 388

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 29/195 (14%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRT 165
           +  V ++VG  GVGKTT I KL+      G    L + +   D +R  A  Q++ + D  
Sbjct: 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIM 232

Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                           A E+FK        +K  D++++DT G+   + + +A + +++ 
Sbjct: 233 G-----------IPVRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLN 281

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278
              R D     +V     +TT  + ++  E+FH  +      +I TK+D T   G LI +
Sbjct: 282 ACGR-DAEFHLAV----SSTTKTSDVK--EIFHQFSPFNYKTVIFTKVDETTCVGNLISL 334

Query: 279 VVTHKIPVYFLGVGE 293
           +   K  V ++  G+
Sbjct: 335 IYEMKKVVSYVTDGQ 349


>gi|225552424|ref|ZP_03773364.1| flagellar biosynthesis protein FlhF [Borrelia sp. SV1]
 gi|225371422|gb|EEH00852.1| flagellar biosynthesis protein FlhF [Borrelia sp. SV1]
          Length = 388

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 29/195 (14%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRT 165
           +  V ++VG  GVGKTT I KL+      G    L + +   D +R  A  Q++ + D  
Sbjct: 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIM 232

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQ-----AKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                           A E+FK  +     +K  D++++DT G+   + + +A + +++ 
Sbjct: 233 G-----------IPVRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLN 281

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278
              R D     +V     +TT  + ++  E+FH  +      +I TK+D T   G LI +
Sbjct: 282 ACGR-DAEFHLAV----SSTTKTSDVK--EIFHQFSPFNYKTVIFTKVDETTCVGNLISL 334

Query: 279 VVTHKIPVYFLGVGE 293
           +   K  V ++  G+
Sbjct: 335 IYEMKKVVSYVTDGQ 349


>gi|15594615|ref|NP_212404.1| flagellar biosynthesis regulator FlhF [Borrelia burgdorferi B31]
 gi|195941376|ref|ZP_03086758.1| flagellar biosynthesis regulator FlhF [Borrelia burgdorferi 80a]
 gi|216264716|ref|ZP_03436708.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi 156a]
 gi|218249313|ref|YP_002374793.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi ZS7]
 gi|221217685|ref|ZP_03589153.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi 72a]
 gi|223888784|ref|ZP_03623375.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi 64b]
 gi|224533208|ref|ZP_03673808.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi WI91-23]
 gi|224533859|ref|ZP_03674447.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi CA-11.2a]
 gi|225549184|ref|ZP_03770159.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 94a]
 gi|225550144|ref|ZP_03771104.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 118a]
 gi|226320570|ref|ZP_03796130.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 29805]
 gi|226321588|ref|ZP_03797114.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi Bol26]
 gi|3913665|sp|Q44758|FLHF_BORBU RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|1165255|gb|AAA85594.1| FlhF [Borrelia burgdorferi]
 gi|2688196|gb|AAC66678.1| flagellar-associated GTP-binding protein (flhF) [Borrelia
           burgdorferi B31]
 gi|215981189|gb|EEC21996.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi 156a]
 gi|218164501|gb|ACK74562.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi ZS7]
 gi|221192362|gb|EEE18581.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi 72a]
 gi|223885600|gb|EEF56699.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi 64b]
 gi|224511935|gb|EEF82336.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi WI91-23]
 gi|224513152|gb|EEF83515.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi CA-11.2a]
 gi|225369256|gb|EEG98709.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 118a]
 gi|225370410|gb|EEG99848.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 94a]
 gi|226232777|gb|EEH31530.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi Bol26]
 gi|226233989|gb|EEH32710.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 29805]
 gi|312147780|gb|ADQ30439.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-bindingprotein) [Borrelia burgdorferi JD1]
 gi|312149574|gb|ADQ29645.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-bindingprotein) [Borrelia burgdorferi N40]
          Length = 388

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 29/195 (14%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRT 165
           +  V ++VG  GVGKTT I KL+      G    L + +   D +R  A  Q++ + D  
Sbjct: 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIM 232

Query: 166 SADFVCSEIGSDAAALAYEAFKQ-----AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                           A E+FK        +K  D++++DT G+   + + +A + +++ 
Sbjct: 233 G-----------IPVRAIESFKDLKDEITDSKDFDLILVDTIGKSPKDFMKLAEMKELLN 281

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPI 278
              R D     +V     +TT  + ++  E+FH  +      +I TK+D T   G LI +
Sbjct: 282 ACGR-DAEFHLAV----SSTTKTSDVK--EIFHQFSPFNYKTVIFTKVDETTCVGNLISL 334

Query: 279 VVTHKIPVYFLGVGE 293
           +   K  V ++  G+
Sbjct: 335 IYEMKKVVSYVTDGQ 349


>gi|322515309|ref|ZP_08068306.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Actinobacillus ureae ATCC 25976]
 gi|322118685|gb|EFX90897.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Actinobacillus ureae ATCC 25976]
          Length = 556

 Score = 43.9 bits (102), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 95/224 (42%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S K +    D ++S       R E  +L I    G  
Sbjct: 265 ARQKSIAKELEWVRQNPKGRQAKS-KARMARFDELNSGEYQK--RNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y       R L D         +  S P       +  ++ ++G N
Sbjct: 320 LGDKVIEVSNLTKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 359

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G  VM     LA+ D FR +  D+  +W + ++   + +  
Sbjct: 360 GAGKSTLFRMLSGQEQPDSGSIVMGETVTLASVDQFRDSMDDKKTVWEEVSNGQDILTIG 419

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K V  L     GRLH   +L  G
Sbjct: 420 NFEIPSRAYVGRFNFKGVDQQKHVGELSGGERGRLHLAKLLQRG 463


>gi|257058774|ref|YP_003136662.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8802]
 gi|256588940|gb|ACU99826.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8802]
          Length = 346

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 22/149 (14%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRT----SA 167
           V ++ G  G GKTT++  +    ++  LKV +   + F    ID QL +  D      S 
Sbjct: 22  VTIITGFLGSGKTTLLNHILT--NNQQLKVAVLVNE-FGDIDIDSQLLVSVDENMVALSN 78

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I  +     Y+  +QA   K+D LI++T G      I +  I   +R + RLD 
Sbjct: 79  GCICCTINDNLVEAVYQILEQA--DKIDYLILETTGVADPLPIALTFINTELRDMTRLD- 135

Query: 228 HAPHSVLQVLDATT-------GQNALRQV 249
               S+L V+DA T        + ALRQ+
Sbjct: 136 ----SILTVVDAETFTPEHFESEAALRQI 160


>gi|320087982|emb|CBY97744.1| Cell division protein ftsY homolog [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 305

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 189 FFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIANLTE 248

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
               K +     LY  + + + ++L  + +P N +    P VIL+VGVNGVGKT
Sbjct: 249 GASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKT 301


>gi|218245728|ref|YP_002371099.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8801]
 gi|218166206|gb|ACK64943.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8801]
          Length = 346

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 22/149 (14%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRT----SA 167
           V ++ G  G GKTT++  +    ++  LKV +   + F    ID QL +  D      S 
Sbjct: 22  VTIITGFLGSGKTTLLNHILT--NNQQLKVAVLVNE-FGDIDIDSQLLVSVDENMVALSN 78

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I  +     Y+  +QA   K+D LI++T G      I +  I   +R + RLD 
Sbjct: 79  GCICCTINDNLVEAVYQILEQA--DKIDYLILETTGVADPLPIALTFINTELRDMTRLD- 135

Query: 228 HAPHSVLQVLDATT-------GQNALRQV 249
               S+L V+DA T        + ALRQ+
Sbjct: 136 ----SILTVVDAETFTPEHFESEAALRQI 160


>gi|30250408|ref|NP_842478.1| flagellar biosynthesis regulator FlhF [Nitrosomonas europaea ATCC
           19718]
 gi|30181203|emb|CAD86401.1| possible flhF; flagellar biosynthetic protein FlhF [Nitrosomonas
           europaea ATCC 19718]
          Length = 419

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 14/184 (7%)

Query: 116 VVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ++G  GVGKTT   KL+ +  +     KV L   D++R    +QL+I+           +
Sbjct: 190 LIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGISVRSIK 249

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D   + +E       +   +++IDT G    + +L     + I +L +      H +
Sbjct: 250 DIDDLQLMLHE------LRGKHMVLIDTVGMSQRDQML----AEQITMLSQCGTEVKHLL 299

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L  L+AT+  + L +V   +   G  G I+TK+D  A  G  +  V+  K+ ++++  G+
Sbjct: 300 L--LNATSSGDTLDEVISAYQQHGIHGCIITKVDEAASLGIALDAVIRRKLVLHYVTNGQ 357

Query: 294 GIND 297
            + +
Sbjct: 358 KVPE 361


>gi|302807387|ref|XP_002985388.1| hypothetical protein SELMODRAFT_122109 [Selaginella moellendorffii]
 gi|300146851|gb|EFJ13518.1| hypothetical protein SELMODRAFT_122109 [Selaginella moellendorffii]
          Length = 157

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 16/78 (20%)

Query: 254 AVAGTTGLIMTKMDGTA----------------RGGGLIPIVVTHKIPVYFLGVGEGIND 297
           AVA    LI+  MDG++                +GGG +  V   K P+ FLG GE +ND
Sbjct: 35  AVATKPDLIVFVMDGSSSCVQGECPSWRCYHHGKGGGTLRAVAATKSPIIFLGTGERLND 94

Query: 298 LEPFVAKDFSAVITGCLD 315
           LE F ++ F+  + G  D
Sbjct: 95  LEVFESRSFANKLLGMAD 112


>gi|257095370|ref|YP_003169011.1| flagellar biosynthesis regulator FlhF [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047894|gb|ACV37082.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 458

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 26/199 (13%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V  +VG  GVGKTT   KL+ +  +     K+ L   D +R  A +QL+I+  
Sbjct: 229 DIVDRGGVYALVGPTGVGKTTTTAKLAARCVLRHGARKLALVTTDGYRIGAHEQLRIYGR 288

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG-----RLHNNSILMAGIGKM 218
                 V   +  DA  L        Q K +  ++IDT G     RL +  + M G  K+
Sbjct: 289 ILG---VSVHLARDAEDL-RTTLTDLQHKHM--VLIDTMGMSQRDRLVSEQVAMFGDSKV 342

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
             +L             +L AT+G + L  V   ++     G I+TK+D  A     + +
Sbjct: 343 KSLL-------------LLSATSGGDTLDDVVRAYSGLHLAGCILTKVDEAAGLAASLDV 389

Query: 279 VVTHKIPVYFLGVGEGIND 297
           ++  ++ ++++  G+ + +
Sbjct: 390 IIRQRLRLFYVSNGQRVPE 408


>gi|254517022|ref|ZP_05129080.1| flagellar biosynthesis protein [gamma proteobacterium NOR5-3]
 gi|219674527|gb|EED30895.1| flagellar biosynthesis protein [gamma proteobacterium NOR5-3]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 27/193 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFV 170
           +  V G  GVGKT+ + +L+   +   G +++ L   D +R  A +QL  +AD       
Sbjct: 155 ITAVYGGTGVGKTSTVARLAGADIQRLGPEMVGLITLDNYRIGAQEQLASFADTLGIPLF 214

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMAGIGKMIRVLKR 224
            +   +D  +L+  A ++ Q +++    IDTAG      RL     L++ + K +R L  
Sbjct: 215 TA---NDRQSLSL-ALQKMQGRRI---YIDTAGMSQHDARLRGQYALISELRKPVRHLLV 267

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           L   A  S  + L A     AL            +G I++K+D     GG++ +V++  +
Sbjct: 268 LAASAQASQCRALAANFSPRAL------------SGAIISKVDEAQSLGGVLDVVISAGL 315

Query: 285 PVYFLGVGEGIND 297
           PV     G+ I D
Sbjct: 316 PVLAYSSGQRIPD 328


>gi|172036415|ref|YP_001802916.1| hypothetical protein cce_1500 [Cyanothece sp. ATCC 51142]
 gi|171697869|gb|ACB50850.1| hypothetical protein cce_1500 [Cyanothece sp. ATCC 51142]
          Length = 341

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 23/171 (13%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +   + +P   P N      P V ++ G  G GKTT++  +    ++  LKV +   + F
Sbjct: 1   MTQTLSVPNKSPLNLPKQGMP-VTIITGFLGSGKTTLVNHILT--NNQQLKVAVLVNE-F 56

Query: 151 RSAAID-QLKIWADRT----SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
               ID QL +  D      S   +C  I  D     Y+  +Q     +D LI++T G  
Sbjct: 57  GDIDIDSQLLVSIDENMVALSNGCICCTINDDLVEAVYQVLEQG--DNIDYLILETTGVA 114

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT-------GQNALRQV 249
               I +  +   +R + RLD     S+L V+DA T        + ALRQ+
Sbjct: 115 DPLPIALTFLNTELRDMTRLD-----SILTVVDAETFTSEHSQSEAALRQI 160


>gi|313610161|gb|EFR85466.1| flagellar biosynthesis protein FlhF [Listeria monocytogenes FSL
           F2-208]
          Length = 279

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 104 NWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           ++D S HR  +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +A
Sbjct: 200 SFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257

Query: 163 DRTSADFVCS 172
           D+   + + +
Sbjct: 258 DKLDVELIVA 267


>gi|149376627|ref|ZP_01894387.1| Flagellar GTP-binding protein [Marinobacter algicola DG893]
 gi|149359145|gb|EDM47609.1| Flagellar GTP-binding protein [Marinobacter algicola DG893]
          Length = 431

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 36/215 (16%)

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFR 151
           KML    K    +++    V  +VG  G GKTT IGKL+    +      + L   D +R
Sbjct: 209 KMLAAGVKTARTEWADEGGVYALVGPTGSGKTTTIGKLAAHYVLRHGADSLALVTTDRYR 268

Query: 152 SAAIDQLKIWA----------DRT-SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            AA +QL ++           D T S D +  E+ SD                  +++ID
Sbjct: 269 VAAHEQLFVFGRILNVPVRVVDETHSLDDILDEL-SDR----------------HLVLID 311

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAG    +      + ++ R   R+  H       V+ AT+    ++ V   + +A  TG
Sbjct: 312 TAGLTSTDKGYEEQLMELARSHHRIRTHL------VVSATSQPRIMKSVWHCYKMANLTG 365

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            +MTK+D     G  +  V+   +PV +   G+ I
Sbjct: 366 CVMTKIDEALTLGESLGFVMETGLPVAYYTDGQKI 400


>gi|113969640|ref|YP_733433.1| flagellar biosynthesis regulator FlhF [Shewanella sp. MR-4]
 gi|113884324|gb|ABI38376.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella sp. MR-4]
          Length = 458

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 109/249 (43%), Gaps = 28/249 (11%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           +G  +  K++E   +   A  ++     Y  +EL+  +   L+   +    D   +  V+
Sbjct: 185 VGAMLESKLLEAEFSPAVANKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVV 244

Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +VG  GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +
Sbjct: 245 ALVGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQA 304

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              ++   + Y      Q +   +++IDTAG    +          +R+ ++LD    +S
Sbjct: 305 HDLAELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 348

Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            + +      + TGQ  + Q  V  F  +   +G+++TK+D +    G + +++   +P+
Sbjct: 349 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGVVLTKLDESVSLAGALSVLIQSGLPL 407

Query: 287 YFLGVGEGI 295
            ++  G+ +
Sbjct: 408 SYVTDGQRV 416


>gi|114046870|ref|YP_737420.1| flagellar biosynthesis regulator FlhF [Shewanella sp. MR-7]
 gi|113888312|gb|ABI42363.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella sp. MR-7]
          Length = 458

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 109/249 (43%), Gaps = 28/249 (11%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           +G  +  K++E   +   A  ++     Y  +EL+  +   L+   +    D   +  V+
Sbjct: 185 VGAMLESKLLEAEFSPAVANKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVV 244

Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +VG  GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +
Sbjct: 245 ALVGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQA 304

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              ++   + Y      Q +   +++IDTAG    +          +R+ ++LD    +S
Sbjct: 305 HDLAELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 348

Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            + +      + TGQ  + Q  V  F  +   +G+++TK+D +    G + +++   +P+
Sbjct: 349 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGVVLTKLDESVSLAGALSVLIQSGLPL 407

Query: 287 YFLGVGEGI 295
            ++  G+ +
Sbjct: 408 SYVTDGQRV 416


>gi|24374724|ref|NP_718767.1| flagellar biosynthesis regulator FlhF [Shewanella oneidensis MR-1]
 gi|24349384|gb|AAN56211.1|AE015759_3 flagellar biosynthetic protein FlhF [Shewanella oneidensis MR-1]
          Length = 458

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 109/249 (43%), Gaps = 28/249 (11%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           +G  +  K++E   +   A  ++     Y  +EL+  +   L+   +    D   +  V+
Sbjct: 185 VGAMLESKLLEAEFSPAVASKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVV 244

Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +VG  GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +
Sbjct: 245 ALVGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQA 304

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              ++   + Y      Q +   +++IDTAG    +          +R+ ++LD    +S
Sbjct: 305 HDLAELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 348

Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            + +      + TGQ  + Q  V  F  +   +G+++TK+D +    G + +++   +P+
Sbjct: 349 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGVVLTKLDESVSLAGALSVLIQSGLPL 407

Query: 287 YFLGVGEGI 295
            ++  G+ +
Sbjct: 408 SYVTDGQRV 416


>gi|75812510|ref|YP_320129.1| cobalamin synthesis protein/P47K [Anabaena variabilis ATCC 29413]
 gi|75705266|gb|ABA24940.1| Cobalamin synthesis protein/P47K [Anabaena variabilis ATCC 29413]
          Length = 353

 Score = 43.1 bits (100), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++ ++ K   D  + V++   + F    ID QL I  D    +   
Sbjct: 22  VTIITGFLGSGKTTLLNQILKNKQDLKVAVLV---NEFGDINIDSQLLISVDEDMVELTN 78

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I  +     Y   ++    ++D L+I+T G      I++  +G  +R L  LD 
Sbjct: 79  GCICCTINDNLVDAVYRVLERED--RIDYLVIETTGVADPLPIILTFLGTELRDLTNLD- 135

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
               S+L V+DA     A  + E FH+ A 
Sbjct: 136 ----SILTVVDA----EAFNE-EHFHSEAA 156


>gi|293390332|ref|ZP_06634666.1| ABC transporter domain protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950866|gb|EFE00985.1| ABC transporter domain protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 548

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S        ++ S        R E  +L I    G  
Sbjct: 257 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           + +K++E + L+K Y       R L D         +  S P       +  ++ ++G N
Sbjct: 312 LGEKVIEVQHLSKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS K+  D+G       V+LA+   FR A  ++  +W + ++   + +  
Sbjct: 352 GAGKSTLFRMLSGKEKPDSGTITLGETVVLASVYQFRDAMDEKKTVWEEVSNGQDILTIG 411

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GRLH   +L AG G M+
Sbjct: 412 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG-GNML 459


>gi|261868255|ref|YP_003256177.1| putative ABC transporter ATP-binding protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413587|gb|ACX82958.1| ABC transporter domain protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 548

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S        ++ S        R E  +L I    G  
Sbjct: 257 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNSGEYQK---RNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           + +K++E + L+K Y       R L D         +  S P       +  ++ ++G N
Sbjct: 312 LGEKVIEVQHLSKSYG-----DRTLIDD--------LSFSIP-------KGAIVGIIGAN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS K+  D+G       V+LA+   FR A  ++  +W + ++   + +  
Sbjct: 352 GAGKSTLFRMLSGKEKPDSGTITLGETVVLASVYQFRDAMDEKKTVWEEVSNGQDILTIG 411

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GRLH   +L AG G M+
Sbjct: 412 NFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQAG-GNML 459


>gi|323703186|ref|ZP_08114839.1| flagellar biosynthetic protein FlhF [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531845|gb|EGB21731.1| flagellar biosynthetic protein FlhF [Desulfotomaculum nigrificans
           DSM 574]
          Length = 434

 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 25/211 (11%)

Query: 117 VGVNGVGKTTVIGK-------LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           VG  GVGKTT + K       L KK      KV L    T+R  + DQLKI+ +      
Sbjct: 238 VGPPGVGKTTTLTKLATKFKLLEKK------KVALITVYTYRYGSADQLKIYGETLD--- 288

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V  E+    A L  +A +Q   K  D ++IDT GR   N+  +  +   + V+    P  
Sbjct: 289 VPVEVVMTPAELR-QAVEQHADK--DHILIDTVGRTSKNTGQVLELKGFLEVI----PEQ 341

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
               L +  +T  ++  R +  F  +A     I TK D T   G ++ +V    +P+ + 
Sbjct: 342 QDIFLVLAASTKDRDLFRTIRDFR-IAHFNKFIFTKTDETETLGSMLNVVSRTGLPIAYY 400

Query: 290 GVGEGI-NDLEPFVAKDFSAVITGCLDYGEE 319
             G+ I +DLE    K  + ++    D  EE
Sbjct: 401 TDGQSIPDDLEKAYPKKLAHLLFRSADRYEE 431


>gi|117919805|ref|YP_868997.1| flagellar biosynthesis regulator FlhF [Shewanella sp. ANA-3]
 gi|117612137|gb|ABK47591.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella sp. ANA-3]
          Length = 458

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 110/251 (43%), Gaps = 28/251 (11%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           +G  +  K++E   +   A  ++     Y  +EL+  +   L+   +    D   +  V+
Sbjct: 185 VGAMLESKLLEAEFSPAVANKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVV 244

Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +VG  GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +
Sbjct: 245 ALVGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQA 304

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              ++   + Y      Q +   +++IDTAG    +          +R+ ++LD    +S
Sbjct: 305 HDLAELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 348

Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            + +      + TGQ  + Q  V  F  +   +G+++TK+D +    G + +++   +P+
Sbjct: 349 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGVVLTKLDESVSLAGALSVLIQSGLPL 407

Query: 287 YFLGVGEGIND 297
            ++  G+ + +
Sbjct: 408 SYVTDGQRVPE 418


>gi|315639131|ref|ZP_07894297.1| DNA repair protein RadA [Campylobacter upsaliensis JV21]
 gi|315480768|gb|EFU71406.1| DNA repair protein RadA [Campylobacter upsaliensis JV21]
          Length = 446

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 60/106 (56%), Gaps = 14/106 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           +IL+ G  GVGK+T++ K++  ++  G KV+  +G+  ++    Q+K+ ADR  A+    
Sbjct: 91  LILIGGSPGVGKSTLLLKIASNLAQKGKKVLYVSGEESKT----QIKLRADRLEANSPNL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           F+ +E+  +   +A E +KQ      + LIID+   L+++ I  A 
Sbjct: 147 FLLTELCFE--NIAEELYKQ----DYEFLIIDSIQTLYSSKIASAA 186


>gi|288960023|ref|YP_003450363.1| flagellar biosynthesis protein [Azospirillum sp. B510]
 gi|288912331|dbj|BAI73819.1| flagellar biosynthesis protein [Azospirillum sp. B510]
          Length = 429

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 23/196 (11%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           + +VG  G GKT V  KL+ +       V +   DT R+  +DQL  +           E
Sbjct: 136 LALVGPPGSGKTLVAAKLAARAVFRKCSVGVITTDTVRAGGVDQLAAFTRLMKLKLATVE 195

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              DA A A+E       ++ D++++DTAGR   ++  M  +  M+         A   V
Sbjct: 196 -DPDALAGAFEVH-----RRTDLVLVDTAGRNPFDADDMQDLRTML---------AAGEV 240

Query: 234 LQVLDATTGQNALRQVEM---FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             VL    G +AL   +M   F AV G   +++T++D   R G ++ I    ++      
Sbjct: 241 EPVLVLPAGLDALEAADMALAFKAV-GVRRMLVTRLDMARRLGSVLAIAARARLSFCDAS 299

Query: 291 ----VGEGINDLEPFV 302
               V EG+  L P  
Sbjct: 300 ISSKVAEGLTALNPLA 315


>gi|91792699|ref|YP_562350.1| flagellar biosynthesis regulator FlhF [Shewanella denitrificans
           OS217]
 gi|91714701|gb|ABE54627.1| GTP-binding signal recognition particle SRP54, G-domain [Shewanella
           denitrificans OS217]
          Length = 462

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 88/199 (44%), Gaps = 23/199 (11%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+  VG  GVGKTT + KL+ + +      +V L   D +R  A +QL  +  
Sbjct: 240 DIVRRGGVVAFVGPTGVGKTTSLAKLAARFAAQHGPEQVALITTDHYRIGAFEQLATYGK 299

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   +   ++   + Y      Q +   +++IDTAG    +          +R+ +
Sbjct: 300 IMGCPVKQAHDLAELEQIIY------QFRNRKLVLIDTAGMGQRD----------MRLYQ 343

Query: 224 RLDPHAPHSVLQ-----VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +LD    +S +      VL AT  +  L+           +G+++TK+D +    G + +
Sbjct: 344 QLDNLTANSKIPIRSYLVLSATGQRRVLQDAVTHFKRIPLSGVVLTKLDESVSIAGALSV 403

Query: 279 VVTHKIPVYFLGVGEGIND 297
           ++ +++P+ ++  G+ + +
Sbjct: 404 LIQNELPLSYVTDGQRVPE 422


>gi|57505626|ref|ZP_00371553.1| DNA repair protein RadA [Campylobacter upsaliensis RM3195]
 gi|57016173|gb|EAL52960.1| DNA repair protein RadA [Campylobacter upsaliensis RM3195]
          Length = 446

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 60/106 (56%), Gaps = 14/106 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           +IL+ G  GVGK+T++ K++  ++  G KV+  +G+  ++    Q+K+ ADR  A+    
Sbjct: 91  LILIGGSPGVGKSTLLLKIASNLAQKGKKVLYVSGEESKT----QIKLRADRLEANSPNL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           F+ +E+  +   +A E +KQ      + LIID+   L+++ I  A 
Sbjct: 147 FLLTELCFE--NIAEELYKQ----DYEFLIIDSIQTLYSSKIASAA 186


>gi|224826339|ref|ZP_03699441.1| GTP-binding signal recognition particle SRP54 G- domain [Lutiella
           nitroferrum 2002]
 gi|224601440|gb|EEG07621.1| GTP-binding signal recognition particle SRP54 G- domain [Lutiella
           nitroferrum 2002]
          Length = 479

 Score = 42.7 bits (99), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 115/260 (44%), Gaps = 43/260 (16%)

Query: 53  LIRSDIGVAVAQKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
           L +  + V ++  ++ +L+ K   +Y  +V+++   +  S L+H +    +   + D   
Sbjct: 206 LFKHLLSVGLSATLIRQLIDKMPAQYQGEVTLK---WARSALMHNLKCADA---DRDVME 259

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           R  +  +VG  GVGKTT + KL+ +  M      V L   D++R  A DQL+I+      
Sbjct: 260 RGGIYALVGPTGVGKTTTVAKLAARATMKFGAQHVALITTDSYRIGAQDQLRIYG----- 314

Query: 168 DFVCSEIGSDAAALAYEAFKQ---AQAKKVDVLIIDTAG------RLHNNSILMAGIGKM 218
                 +G    ++  E+  Q   A      ++ IDT G      R+   + +  G G+ 
Sbjct: 315 ----KILGVPVYSIQNESELQLTLADLASRHIVFIDTVGMGQRDARVAAQTQMFDGTGRE 370

Query: 219 I-RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           I R+L             ++ A    + L  V   +   G  G I++K+D +   G  + 
Sbjct: 371 IQRIL-------------LMAANADGHTLEDVVRHYRGHGLAGCILSKIDESVAMGPSLD 417

Query: 278 IVVTHKIPVYFLGVGEGIND 297
           +++ +++ ++++  G+ + +
Sbjct: 418 VIIRNRLKMFYITNGQRVPE 437


>gi|163750534|ref|ZP_02157772.1| flagellar biosynthesis protein [Shewanella benthica KT99]
 gi|161329689|gb|EDQ00678.1| flagellar biosynthesis protein [Shewanella benthica KT99]
          Length = 463

 Score = 42.7 bits (99), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 139/312 (44%), Gaps = 35/312 (11%)

Query: 2   SNQKVASESLSWIRKL---TKGFASTSLKL-KEGITDIISSRRLDDGVREELEDLLIRSD 57
           S+ K A E+  +  K    TKG AS  L++ +E +  + S   L   V   + +   R D
Sbjct: 133 SSAKSAPETAHYSNKPSAETKGKASPELEMMREELASLRS--LLTHQVTALMSEQKSRLD 190

Query: 58  -IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHV 113
            +G  +  K++E   +   AK +S     Y  ++L+  +   L+   +    D   +  V
Sbjct: 191 PVGAMLESKLLEAEFSPTLAKKLSELSEHYTPADLVRALPRSLANMLDNQGDDIVRQGGV 250

Query: 114 ILVVGVNGVGKTTVIGKLSKKM-SDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +  VG  GVGKTT + K++ +  +  G++ V L   D +R  A +QL  +          
Sbjct: 251 VAFVGPTGVGKTTTLAKIAARYAAHHGVEHVALVTTDHYRIGAFEQLATYGKIMGCPVKQ 310

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +   ++   + Y      Q +   +++IDTAG    ++          R+ ++LD  A +
Sbjct: 311 AHDLNELEQILY------QFRNRKLVLIDTAGMGQRDT----------RLFQQLDNLAAN 354

Query: 232 SVLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           S L +      ++TGQ  + +  V  F  +   +G I+TK+D +      + +++   +P
Sbjct: 355 SRLPIRSYLVLSSTGQRRVLEEAVTQFSRIP-LSGAILTKLDESVSLAPALSVLIQSGLP 413

Query: 286 VYFLGVGEGIND 297
           + ++  G+ + +
Sbjct: 414 LSYVTDGQRVPE 425


>gi|157961204|ref|YP_001501238.1| flagellar biosynthesis regulator FlhF [Shewanella pealeana ATCC
           700345]
 gi|157846204|gb|ABV86703.1| GTP-binding signal recognition particle SRP54 G- domain [Shewanella
           pealeana ATCC 700345]
          Length = 470

 Score = 42.7 bits (99), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 109/251 (43%), Gaps = 28/251 (11%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           +G  +  K+++   +   AK +S     Y  +EL+  +   L+   +    D   +  V+
Sbjct: 197 VGAMLESKLLDAEFSPAIAKKLSSLSEHYSPAELVASLPRSLANMLDNQGDDIVRQGGVV 256

Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
             VG  GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +
Sbjct: 257 AFVGPTGVGKTTTVAKLAARFAAYHGSDQVALITTDHYRIGAFEQLATYGKIMGCPVKQA 316

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              ++   + Y      Q +   +++IDTAG    +           R+ ++LD  A +S
Sbjct: 317 HDFNELEQILY------QFRNRKLVLIDTAGMGQRDQ----------RLFQQLDSLAANS 360

Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            L +      + TGQ  + +  V+ F  +   +G ++TK+D +      + +++   +P+
Sbjct: 361 RLPIRSYLVMSATGQRRVLEDAVKQFTRIP-LSGAVLTKLDESISLAPALSVLIQSGLPL 419

Query: 287 YFLGVGEGIND 297
            ++  G+ + +
Sbjct: 420 SYVTDGQRVPE 430


>gi|212709098|ref|ZP_03317226.1| hypothetical protein PROVALCAL_00131 [Providencia alcalifaciens DSM
           30120]
 gi|212688010|gb|EEB47538.1| hypothetical protein PROVALCAL_00131 [Providencia alcalifaciens DSM
           30120]
          Length = 548

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L WIR+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWIRQNPKGRQS---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E E L+K Y       RVL D                N +FS  +  ++ ++G 
Sbjct: 312 LGDKVIEVENLSKSYG-----DRVLID----------------NLNFSIPKGAIVGIIGP 350

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   +S ++  D+G       V +A+ D FR A  D   +W + ++   +   
Sbjct: 351 NGAGKSTLFRMISGQEQPDSGSITLGDTVKIASVDQFRDAMDDSKTVWEEISNGQDIMRI 410

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 411 GNFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455


>gi|91776298|ref|YP_546054.1| flagellar biosynthesis regulator FlhF [Methylobacillus flagellatus
           KT]
 gi|91710285|gb|ABE50213.1| GTP-binding signal recognition particle SRP54, G-domain
           [Methylobacillus flagellatus KT]
          Length = 536

 Score = 42.7 bits (99), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 14/187 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +  +VG  GVGKTT   KL+ +  M     K+ L   D++R    +QL+I+        V
Sbjct: 241 IYALVGPTGVGKTTTTAKLAARFVMKHGPRKLALITTDSYRIGGHEQLRIYGKILG---V 297

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 D A L   A  + + K    ++IDT G    + +    + + I +L +     P
Sbjct: 298 MVHAVKDEADLRI-ALNELKGK--HTILIDTVGVSQRDRM----VAEQIAMLSKTG--LP 348

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              +  ++AT+    L  V   +   G  G I+TK+D  A  G ++ I++  ++ +Y++ 
Sbjct: 349 IKKILCMNATSSGETLVDVMDVYKRYGLDGGIITKLDEAASIGSVLDIIIRERLKLYYVA 408

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 409 NGQRVPE 415


>gi|113869308|ref|YP_727797.1| putative ABC transporter ATP-binding protein [Ralstonia eutropha
           H16]
 gi|113528084|emb|CAJ94429.1| ABC-type transporter, duplicated ATPase domains:Drug RA1 family
           [Ralstonia eutropha H16]
          Length = 555

 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 44/228 (19%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S K +    D ++S+  D   R E +++ I   +G  
Sbjct: 264 ARQKALHKELEWVRQNPKGRQAKS-KARLARFDELNSQ--DYQKRNETQEIFI--PVGER 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119
           +  +++E + ++K Y       R+L D                N  F   P  I+ ++G 
Sbjct: 319 LGNEVIEFDGVSKGYG-----DRLLID----------------NLSFKVPPGAIVGIIGP 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           NG GK+T    L+ K+  D+G    +  G T + A +DQ +   D T   F     GSD 
Sbjct: 358 NGAGKSTFFRMLTGKEQPDSG---EIKIGPTVKMAFVDQSRDALDGTKTVFEEISGGSDI 414

Query: 179 AALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214
             +  YE   +A           Q K+V  L     GRLH    L+AG
Sbjct: 415 LTVGRYETPSRAYIGRFNFKGGDQQKQVGTLSGGERGRLHMAKTLIAG 462


>gi|297538884|ref|YP_003674653.1| flagellar biosynthetic protein FlhF [Methylotenera sp. 301]
 gi|297258231|gb|ADI30076.1| flagellar biosynthetic protein FlhF [Methylotenera sp. 301]
          Length = 495

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 20/188 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +  ++G  GVGKTT   KL+ +  M      + +   D +R    +QL+I+         
Sbjct: 267 IFALIGPTGVGKTTTTAKLAARYVMKHGTENLGIITTDAYRIGGHEQLRIYGKI------ 320

Query: 171 CSEIGSDAAALAYEA-FKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              +G    A+  EA  K A  + K    ++IDT G    + ++   I  +         
Sbjct: 321 ---LGVMVHAVKDEADLKIALNELKNKHTVLIDTVGVSQRDRMVAEQIAMLSST------ 371

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
           + P   L  L+AT+    L  V   +   G  G I+TK+D  A  G  + +V+  K+ +Y
Sbjct: 372 NMPVKKLLCLNATSTGETLTDVIKAYKRKGLEGCIITKLDEAATIGNALDVVIREKLKLY 431

Query: 288 FLGVGEGI 295
           ++  G+ +
Sbjct: 432 YVANGQRV 439


>gi|212634382|ref|YP_002310907.1| flagellar biosynthesis regulator FlhF [Shewanella piezotolerans
           WP3]
 gi|212555866|gb|ACJ28320.1| GTP-binding signal recognition particle SRP54, G-domain protein
           [Shewanella piezotolerans WP3]
          Length = 455

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 109/251 (43%), Gaps = 28/251 (11%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           +G  +  K++E   +   AK +S     Y  +EL+  +   L+   +    D   +  V+
Sbjct: 182 VGAMLESKLLEAEFSPAVAKKLSNLSEHYSPAELVASLPRSLANMLDNQGDDIVRQGGVV 241

Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
             VG  GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +
Sbjct: 242 AFVGPTGVGKTTTVAKLAARFAAHHGSDQVALITTDHYRIGAFEQLATYGKIMGCPVKQA 301

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              ++   + Y      Q +   +++IDTAG    +          +R+ ++LD    +S
Sbjct: 302 HDFNELEQILY------QFRNRKLVLIDTAGMGQRD----------LRLFQQLDNLTANS 345

Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            + +      + TGQ  + +  V+ F  +   +G ++TK+D +      + +++   +P+
Sbjct: 346 AIPIRSYLVMSATGQRRVLEDAVKQFTRIP-LSGAVLTKLDESVSLAPALSVLIQSGLPL 404

Query: 287 YFLGVGEGIND 297
            ++  G+ + +
Sbjct: 405 SYVTDGQRVPE 415


>gi|325188163|emb|CCA22704.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 1077

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 15/104 (14%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRV------LYD------VSELIHKMLMPLSKPFNWD 106
           G   +QK+V+E+L   Y     V+ V      L D         LI +ML   +   N  
Sbjct: 147 GSTTSQKLVQEILLPHYDAKPEVETVCTSPQSLLDSIKDNRTRNLISEMLQVTNDAEN-- 204

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
             HRP +I++ G+ G GK+TV  +LS+ +     KV + + D +
Sbjct: 205 -DHRPWIIILRGIPGSGKSTVARQLSRILPQIHWKVSICSADLY 247


>gi|330791563|ref|XP_003283862.1| hypothetical protein DICPUDRAFT_147576 [Dictyostelium purpureum]
 gi|325086248|gb|EGC39641.1| hypothetical protein DICPUDRAFT_147576 [Dictyostelium purpureum]
          Length = 412

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 15/116 (12%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           LI   L P+SK  N  F+ R    L+ G++GVGKTT++ K              A G+  
Sbjct: 211 LIKYFLKPISKLPNL-FTRREFKTLMYGLDGVGKTTMLYK-------------FARGENV 256

Query: 151 RSAAIDQLKIW-ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           R+   +   +   +  S DF+C +IG +   +        Q  +  + IID+  R+
Sbjct: 257 RTLHTNGYNVEVVEYKSCDFICWDIGFEQNPIVPVWHHYLQDTQAIIFIIDSTDRV 312


>gi|319427056|gb|ADV55130.1| flagellar biosynthetic protein FlhF [Shewanella putrefaciens 200]
          Length = 460

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 112/255 (43%), Gaps = 29/255 (11%)

Query: 55  RSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHR 110
           R+D +G  +  K++E   +   A  ++     Y  +EL+  +   L+   +    D   +
Sbjct: 183 RTDPVGAMLESKLLEAEFSPAVAAKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVRQ 242

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             V+ +VG  GVGKTT + KL+ + +      +V L   D +R  A +QL  +       
Sbjct: 243 GGVVALVGPTGVGKTTSLAKLAARFAAHHGPEQVALITTDHYRIGAYEQLATYGKIMGCP 302

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
              +   ++   + Y      Q +   +++IDTAG    +          +R+ ++LD  
Sbjct: 303 VKQAHDLNELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNL 346

Query: 229 APHSVLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             +S + +      + TGQ  + Q  V  F  +   +G ++TK+D +    G + +++  
Sbjct: 347 TANSRIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGAVLTKLDESVSLAGALSVLIQS 405

Query: 283 KIPVYFLGVGEGIND 297
            +P+ ++  G+ + +
Sbjct: 406 GLPLSYVTDGQRVPE 420


>gi|239816653|ref|YP_002945563.1| ABC transporter ATP-binding protein [Variovorax paradoxus S110]
 gi|239803230|gb|ACS20297.1| ABC transporter related [Variovorax paradoxus S110]
          Length = 553

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 27/171 (15%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWDFSHRPHVIL-V 116
           EEL    Y K    Q +   V+E + + +      SK F       N  F+  P  I+ +
Sbjct: 294 EELSDMEYQKRNETQEIFIPVAERLGQQVFEFHNVSKSFGDRMLIDNLSFTVPPGAIVGI 353

Query: 117 VGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSA 167
           +G NG GK+T+   L+ K+  D+G  V+   G T + A +DQ +        +W D ++ 
Sbjct: 354 IGPNGAGKSTLFKLLAGKEKPDSGEVVI---GQTVKMAFVDQHRDELANNKTVWEDISNG 410

Query: 168 DFVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             + +    ++ S A A  +      Q KKV  L     GRLH    L+AG
Sbjct: 411 LDIINVGKFQMASRAYAGRFNFNGADQQKKVGTLSGGERGRLHLAKTLIAG 461


>gi|86151058|ref|ZP_01069274.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315124671|ref|YP_004066675.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85842228|gb|EAQ59474.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315018393|gb|ADT66486.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 446

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 14/105 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  GVGK+T++ K++  ++  G KV+  +G+  ++    Q+K+ ADR  A+    
Sbjct: 91  LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKA----QIKLRADRLEANTPNL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           F+ +E+  +         ++   K   +LIID+   L++N I  A
Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIIDSIQTLYSNKITSA 185


>gi|283954763|ref|ZP_06372279.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 414]
 gi|283793603|gb|EFC32356.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 414]
          Length = 446

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 14/105 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  GVGK+T++ K++  ++  G KV+  +G+  ++    Q+K+ ADR  A+    
Sbjct: 91  LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKA----QIKLRADRLEANTPNL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           F+ +E+  +         ++   K   +LIID+   L++N I  A
Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIIDSIQTLYSNKITSA 185


>gi|197122903|ref|YP_002134854.1| GTP-binding signal recognition particle SRP54 G- domain
           [Anaeromyxobacter sp. K]
 gi|196172752|gb|ACG73725.1| GTP-binding signal recognition particle SRP54 G- domain
           [Anaeromyxobacter sp. K]
          Length = 382

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 33/229 (14%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLK 141
           R    V +L+ + L+P   P+  D      VI  VG  GVGKTT + K+ ++ + +   +
Sbjct: 164 RAWRAVKDLLGERLVPCRAPWLHDGRR---VIAAVGPTGVGKTTTLAKVAARALLETRKR 220

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           V     DT+R    +QL  +A        V  + G    AL        +   VD++++D
Sbjct: 221 VAFVTVDTYRLGGAEQLARYAGIMEVPVLVARDRGELGRAL-------ERLSDVDLVLLD 273

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAG  H +   +     ++R + R+  H     L V  A          + + A+A    
Sbjct: 274 TAG--HASVEDVERQAALVRSVPRVQLH-----LTVSAAAGALELAAVADRYRALAPDR- 325

Query: 261 LIMTKMDGTARGGGLI--------PIVVT---HKIP--VYFLGVGEGIN 296
           L++TK+D  A  G ++        PI       ++P  V+ LG GE ++
Sbjct: 326 LVLTKLDEAAGPGSVLSAAVRVCRPIACVTNGQRVPEDVHALGAGELVD 374


>gi|116049398|ref|YP_791799.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296390180|ref|ZP_06879655.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa PAb1]
 gi|313106452|ref|ZP_07792683.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa 39016]
 gi|115584619|gb|ABJ10634.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879185|gb|EFQ37779.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa 39016]
          Length = 429

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ +VG  G GKTT + K++ +  +      + L + D++R  A +Q+K      +    
Sbjct: 211 VLALVGPAGAGKTTTLAKMAARYVLKYGAQSLALVSMDSYRIGAQEQIKTLGRILNVPVT 270

Query: 171 CSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             + G S   ALA  A K+       +++IDTAG   ++  L   +  +        P  
Sbjct: 271 LVDPGQSLIQALAPLARKR-------MVLIDTAGLPASDPALRMQLEALA------SPSL 317

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 V+  T+    L+     +   G  G I+TK+D     G  + + +  ++PV +L
Sbjct: 318 NVKNYLVMATTSQSQVLKSAYQTYRHCGLAGCILTKLDEAGSLGESMALAIAQRLPVAYL 377

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 378 ADGPRIPD 385


>gi|288942620|ref|YP_003444860.1| flagellar biosynthetic protein FlhF [Allochromatium vinosum DSM
           180]
 gi|288897992|gb|ADC63828.1| flagellar biosynthetic protein FlhF [Allochromatium vinosum DSM
           180]
          Length = 432

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 21/190 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ +VG  G GKTT + +L+  ++   G   V L   D  R  A  QL+ +        +
Sbjct: 162 VLALVGPTGAGKTTTLSRLALHRIRRLGPDSVTLVTFDRQRIGAHKQLQAFGQMAGVPVI 221

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDP 227
             E   D  ALA  +          ++++DT GR   ++    L A I  ++ +   L  
Sbjct: 222 LLENERDLIALANRSASD------HLILVDTEGRSARDAAERKLFAQIRHLVEIETWL-- 273

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
                   V+ AT     LRQV         T L++TK+D   R G ++ +++   + + 
Sbjct: 274 --------VIPATHQAGVLRQVLKAFQSCEPTALVLTKIDEAERLGEILSVLLEQHLGLV 325

Query: 288 FLGVGEGIND 297
           F   G+ I +
Sbjct: 326 FQSDGQRIEE 335


>gi|15596650|ref|NP_250144.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa PAO1]
 gi|81857291|sp|Q9I3P8|FLHF_PSEAE RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|9947405|gb|AAG04842.1|AE004575_1 flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa PAO1]
          Length = 429

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ +VG  G GKTT + K++ +  +      + L + D++R  A +Q+K      +    
Sbjct: 211 VLALVGPAGAGKTTTLAKMAARYVLKYGAQSLALVSMDSYRIGAQEQIKTLGRILNVPVT 270

Query: 171 CSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             + G S   ALA  A K+       +++IDTAG   ++  L   +  +        P  
Sbjct: 271 LVDPGQSLIQALAPLARKR-------MVLIDTAGLPASDPALRMQLEALA------SPSL 317

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 V+  T+    L+     +   G  G I+TK+D     G  + + +  ++PV +L
Sbjct: 318 NVKNYLVMATTSQSQVLKSAYQTYRHCGLAGCILTKLDEAGSLGESMALAIAQRLPVAYL 377

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 378 ADGPRIPD 385


>gi|145642025|ref|ZP_01797597.1| Signal recognition particle protein [Haemophilus influenzae R3021]
 gi|145273296|gb|EDK13170.1| Signal recognition particle protein [Haemophilus influenzae
           22.4-21]
          Length = 137

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 10/122 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQ----KIVEELLT 72
           F + S +L + + +I    RL +D ++E L ++   L+ +D+ + V +    K+ E  L 
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 73  KRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K ++  Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNLA-TQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SK 133
           +K
Sbjct: 121 AK 122


>gi|172054920|ref|YP_001806247.1| hypothetical protein cce_4834 [Cyanothece sp. ATCC 51142]
 gi|171701201|gb|ACB54181.1| hypothetical protein cce_4834 [Cyanothece sp. ATCC 51142]
          Length = 346

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 22/149 (14%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++ ++ +   +  + V++   + F    ID QL I  D    +   
Sbjct: 22  VTIITGFLGSGKTTLLNQILQNKDNLKIAVLV---NEFGDINIDEQLLISVDSDMIELDN 78

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I        Y   ++ +  K+D L+I+T G      I+M  +G  ++ L RLD 
Sbjct: 79  GCICCTINDGLVNAVYRVLEREE--KIDYLVIETTGLADPFPIIMTFLGTELKFLTRLD- 135

Query: 228 HAPHSVLQVLDATT-------GQNALRQV 249
               +V+ V+DA            ALRQ+
Sbjct: 136 ----AVITVVDAAAFDAKHFDSDAALRQI 160


>gi|107100887|ref|ZP_01364805.1| hypothetical protein PaerPA_01001917 [Pseudomonas aeruginosa PACS2]
 gi|218892674|ref|YP_002441543.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa
           LESB58]
 gi|254234552|ref|ZP_04927875.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa C3719]
 gi|254239802|ref|ZP_04933124.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa 2192]
 gi|126166483|gb|EAZ51994.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa C3719]
 gi|126193180|gb|EAZ57243.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa 2192]
 gi|218772902|emb|CAW28714.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa LESB58]
          Length = 429

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ +VG  G GKTT + K++ +  +      + L + D++R  A +Q+K      +    
Sbjct: 211 VLALVGPAGAGKTTTLAKMAARYVLKYGAQSLALVSMDSYRIGAQEQIKTLGRILNVPVT 270

Query: 171 CSEIG-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
             + G S   ALA  A K+       +++IDTAG   ++  L   +  +        P  
Sbjct: 271 LVDPGQSLIQALAPLARKR-------MVLIDTAGLPASDPALRMQLEALA------SPSL 317

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 V+  T+    L+     +   G  G I+TK+D     G  + + +  ++PV +L
Sbjct: 318 NVKNYLVMATTSQSQVLKSAYQTYRHCGLAGCILTKLDEAGSLGESMALAIAQRLPVAYL 377

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 378 ADGPRIPD 385


>gi|146293657|ref|YP_001184081.1| flagellar biosynthesis regulator FlhF [Shewanella putrefaciens
           CN-32]
 gi|145565347|gb|ABP76282.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella putrefaciens CN-32]
          Length = 460

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 109/251 (43%), Gaps = 28/251 (11%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           +G  +  K++E   +   A  ++     Y  +EL+  +   L+   +    D   +  V+
Sbjct: 187 VGAMLESKLLEAEFSPAVAAKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVRQGGVV 246

Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +VG  GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +
Sbjct: 247 ALVGPTGVGKTTSLAKLAARFAAHHGPEQVALITTDHYRIGAYEQLATYGKIMGCPVKQA 306

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              ++   + Y      Q +   +++IDTAG    +          +R+ ++LD    +S
Sbjct: 307 HDLNELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 350

Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            + +      + TGQ  + Q  V  F  +   +G ++TK+D +    G + +++   +P+
Sbjct: 351 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGAVLTKLDESVSLAGALSVLIQSGLPL 409

Query: 287 YFLGVGEGIND 297
            ++  G+ + +
Sbjct: 410 SYVTDGQRVPE 420


>gi|269137899|ref|YP_003294599.1| putative ABC transporter ATP-binding protein [Edwardsiella tarda
           EIB202]
 gi|267983559|gb|ACY83388.1| putative ABC transporter ATP-binding protein [Edwardsiella tarda
           EIB202]
 gi|304557951|gb|ADM40615.1| ABC transporter ATP-binding protein YjjK [Edwardsiella tarda
           FL6-60]
          Length = 555

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETSELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L+K Y       R+L D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVLEVSNLSKSYG-----DRLLIDA--------LSFSIP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   +S ++ +D+G       V LA+ D FR A  D+  +W + +    +    
Sbjct: 359 GAGKSTLFRMISGQEQADSGSITLGDTVTLASVDQFRDAMDDKKSVWEEISGGQDIMRIG 418

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GRLH   +L  G G M+
Sbjct: 419 NFEIASRAYVGRFNFKGTDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|67921569|ref|ZP_00515087.1| Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K
           [Crocosphaera watsonii WH 8501]
 gi|67856681|gb|EAM51922.1| Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K
           [Crocosphaera watsonii WH 8501]
          Length = 301

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 22/149 (14%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++ ++ +   +  + V++   + F    ID QL I  +    +   
Sbjct: 22  VTIITGFLGSGKTTLLNQILQNKDNLKIAVLV---NEFGDINIDEQLLISVESDMIELGN 78

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I        Y   ++ +  KVD L+I+T G      I+M  +G  ++VL RLD 
Sbjct: 79  GCICCTINDGLVNAVYRVLEREE--KVDYLVIETTGLADPFPIIMTFVGTELKVLTRLD- 135

Query: 228 HAPHSVLQVLDATT-------GQNALRQV 249
               +++ V+DA            ALRQ+
Sbjct: 136 ----AIITVVDAAAFDAKHFDSDAALRQI 160


>gi|148359328|ref|YP_001250535.1| flagellar GTP-binding protein FlhF [Legionella pneumophila str.
           Corby]
 gi|296107375|ref|YP_003619075.1| flagellar GTP-binding protein FlhF [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281101|gb|ABQ55189.1| flagellar GTP-binding protein FlhF [Legionella pneumophila str.
           Corby]
 gi|295649276|gb|ADG25123.1| flagellar GTP-binding protein FlhF [Legionella pneumophila 2300/99
           Alcoy]
 gi|307610484|emb|CBX00056.1| flagellar biosynthesis protein FlhF [Legionella pneumophila 130b]
          Length = 379

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 14/183 (7%)

Query: 117 VGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           VG  GVGKTT + K++ +  +     K+ L   DT+R AA +QL ++        VC  I
Sbjct: 166 VGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDTYRIAAQEQLILYGKILGVK-VC--I 222

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D  +LA    +Q   KK  +++IDTAG   ++  +   +  +   L+ ++      VL
Sbjct: 223 AQDEVSLA-RVLRQLNDKK--LILIDTAGMNPSDERVTKQMTVLSNYLQSIE-----KVL 274

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VL AT+    L      +        I+TK+D +   GG I  V+   + + +L  G+ 
Sbjct: 275 -VLPATSHYQVLIDAIKRYQANHVDQCIITKLDESLAVGGAISAVIESNLALGYLTDGQR 333

Query: 295 IND 297
           + +
Sbjct: 334 VPE 336


>gi|120598265|ref|YP_962839.1| flagellar biosynthesis regulator FlhF [Shewanella sp. W3-18-1]
 gi|120558358|gb|ABM24285.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella sp. W3-18-1]
          Length = 460

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 109/251 (43%), Gaps = 28/251 (11%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           +G  +  K++E   +   A  ++     Y  +EL+  +   L+   +    D   +  V+
Sbjct: 187 VGAMLESKLLEAEFSPAVAAKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVRQGGVV 246

Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +VG  GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +
Sbjct: 247 ALVGPTGVGKTTSLAKLAARFAAHHGPEQVALITTDHYRIGAYEQLATYGKIMGCPVKQA 306

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              ++   + Y      Q +   +++IDTAG    +          +R+ ++LD    +S
Sbjct: 307 HDLNELEQILY------QFRNRKLVLIDTAGMGQRD----------MRLYQQLDNLTANS 350

Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            + +      + TGQ  + Q  V  F  +   +G ++TK+D +    G + +++   +P+
Sbjct: 351 RIPIRSYLVLSATGQRRVLQDAVNHFKRIP-LSGAVLTKLDESVSLAGALSVLIQSGLPL 409

Query: 287 YFLGVGEGIND 297
            ++  G+ + +
Sbjct: 410 SYVTDGQRVPE 420


>gi|157415468|ref|YP_001482724.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386432|gb|ABV52747.1| DNA repair protein [Campylobacter jejuni subsp. jejuni 81116]
 gi|307748110|gb|ADN91380.1| DNA repair protein radA-like protein [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315932350|gb|EFV11293.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 327]
          Length = 446

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 14/102 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  GVGK+T++ K++  ++  G KV+  +G+  ++    Q+K+ ADR  A+    
Sbjct: 91  LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKA----QIKLRADRLEANTPNL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           F+ +E+  +         ++   K   +LIID+   L++N I
Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIIDSIQTLYSNKI 182


>gi|238918568|ref|YP_002932082.1| ABC transporter ATP-binding protein [Edwardsiella ictaluri 93-146]
 gi|238868136|gb|ACR67847.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 555

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETSELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L+K Y       R+L D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVLEVSNLSKSYG-----DRLLIDA--------LSFSIP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   +S ++  D+G       V LA+ D FR A  D+  +W + +    +    
Sbjct: 359 GAGKSTLFRMISGQEQPDSGSITLGDTVTLASVDQFRDAMDDKKSVWEEVSGGQDIMRIG 418

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GRLH   +L  G G M+
Sbjct: 419 NFEIASRAYVGRFNFKGTDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|205356227|ref|ZP_03222993.1| putative DNA repair protein RadA (ATP-dependant protease)
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345832|gb|EDZ32469.1| putative DNA repair protein RadA (ATP-dependant protease)
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 446

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 14/105 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  GVGK+T++ K++  ++  G KV+  +G+  ++    Q+K+ ADR  A+    
Sbjct: 91  LVLIGGSPGVGKSTLLLKIASNLAKQGRKVLYVSGEESKA----QIKLRADRLEANTPNL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           F+ +E+  +         ++   K   +LIID+   L++N +  A
Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIIDSIQTLYSNKVTSA 185


>gi|167534832|ref|XP_001749091.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772515|gb|EDQ86166.1| predicted protein [Monosiga brevicollis MX1]
          Length = 722

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +GGG +  +   + PV F+G GE I DLEPF  + F + + G
Sbjct: 428 QGGGALSAIAATRSPVIFIGTGERIEDLEPFAPRSFVSKLLG 469


>gi|52842011|ref|YP_095810.1| flagellar biosynthesis regulator FlhF [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52629122|gb|AAU27863.1| flagellar GTP-binding protein FlhF [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 386

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 14/183 (7%)

Query: 117 VGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           VG  GVGKTT + K++ +  +     K+ L   DT+R AA +QL ++        VC  I
Sbjct: 173 VGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDTYRIAAQEQLILYGKILGVK-VC--I 229

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D  +LA    +Q   KK  +++IDTAG   ++  +   +  +   L+ ++      VL
Sbjct: 230 AQDEVSLA-RVLRQLNDKK--LILIDTAGMNPSDERVTKQMTVLSNYLQSIE-----KVL 281

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VL AT+    L      +        I+TK+D +   GG I  V+   + + +L  G+ 
Sbjct: 282 -VLPATSHYQVLIDAIKRYQANHVDQCIITKLDESLAVGGAISAVIESNLALGYLTDGQR 340

Query: 295 IND 297
           + +
Sbjct: 341 VPE 343


>gi|283956598|ref|ZP_06374077.1| putative DNA repair protein RadA (ATP-dependant protease)
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791847|gb|EFC30637.1| putative DNA repair protein RadA (ATP-dependant protease)
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 446

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 14/105 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  GVGK+T++ K++  ++  G KV+  +G+  ++    Q+K+ ADR  A+    
Sbjct: 91  LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKT----QIKLRADRLEANTPNL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           F+ +E+  +         ++   K   +LI+D+   L++N I  A
Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIVDSIQTLYSNKITSA 185


>gi|54294671|ref|YP_127086.1| flagellar biosynthesis regulator FlhF [Legionella pneumophila str.
           Lens]
 gi|53754503|emb|CAH15987.1| Flagellar biosynthesis protein FlhF [Legionella pneumophila str.
           Lens]
          Length = 379

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 14/183 (7%)

Query: 117 VGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           VG  GVGKTT + K++ +  +     K+ L   DT+R AA +QL ++        VC  I
Sbjct: 166 VGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDTYRIAAQEQLILYGKILGVK-VC--I 222

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D  +LA    +Q   KK  +++IDTAG   ++  +   +  +   L+ ++      VL
Sbjct: 223 AQDEVSLA-RVLRQLNDKK--LILIDTAGMNPSDERVTKQMTVLSNYLQSIE-----KVL 274

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VL AT+    L      +        I+TK+D +   GG I  V+   + + +L  G+ 
Sbjct: 275 -VLPATSHYQVLIDAIKRYQANHVDQCIITKLDESLAVGGAISAVIESNLALGYLTDGQR 333

Query: 295 IND 297
           + +
Sbjct: 334 VPE 336


>gi|319794895|ref|YP_004156535.1| ABC transporter [Variovorax paradoxus EPS]
 gi|315597358|gb|ADU38424.1| ABC transporter related protein [Variovorax paradoxus EPS]
          Length = 553

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 27/171 (15%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWDFSHRPHVIL-V 116
           EEL    Y K    Q +   V+E + + +      SK F       N  F+  P  I+ +
Sbjct: 294 EELSDMEYQKRNETQEIFIPVAERLGQQVFEFHGVSKSFGDRMLIDNLSFTVPPGAIVGI 353

Query: 117 VGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSA 167
           +G NG GK+T+   L+ K+  D G  V+   G T + A +DQ +        +W D ++ 
Sbjct: 354 IGPNGAGKSTLFKLLAGKEKPDTGEVVI---GSTVKMAFVDQHRDELANNKTVWEDISNG 410

Query: 168 DFVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             + +    ++ S A A  +      Q KKV  L     GRLH    L+AG
Sbjct: 411 LDIINVGKFQMASRAYAGRFNFNGADQQKKVGTLSGGERGRLHLAKTLIAG 461


>gi|282600391|ref|ZP_05974115.2| ABC transporter, ATP-binding protein YjiK [Providencia rustigianii
           DSM 4541]
 gi|282565461|gb|EFB70996.1| ABC transporter, ATP-binding protein YjiK [Providencia rustigianii
           DSM 4541]
          Length = 548

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 95/230 (41%), Gaps = 39/230 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L WIR+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWIRQNPKGRQS---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E E L+K Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 312 LGDKVLEIENLSKSYG-----DRVLID----------------NLSFSIPKGAIVGIIGP 350

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   +S ++  D+G       V +A+ D FR A  D   +W + ++   +   
Sbjct: 351 NGAGKSTLFRMISGQEQPDSGSITLGDTVKIASVDQFRDAMDDSKTVWEEISNGQDIMRI 410

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
              EI S A    +      Q K+V  L     GRLH   +L  G G M+
Sbjct: 411 GNFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459


>gi|54297697|ref|YP_124066.1| flagellar biosynthesis regulator FlhF [Legionella pneumophila str.
           Paris]
 gi|53751482|emb|CAH12900.1| Flagellar biosynthesis protein FlhF [Legionella pneumophila str.
           Paris]
          Length = 379

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 14/183 (7%)

Query: 117 VGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           VG  GVGKTT + K++ +  +     K+ L   DT+R AA +QL ++        VC  I
Sbjct: 166 VGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDTYRIAAQEQLILYGKILGVK-VC--I 222

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D  +LA    +Q   KK  +++IDTAG   ++  +   +  +   L+ ++      VL
Sbjct: 223 AQDEVSLA-RVLRQLNDKK--LILIDTAGMNPSDERVTKQMTVLSNYLQSIE-----KVL 274

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VL AT+    L      +        I+TK+D +   GG I  V+   + + +L  G+ 
Sbjct: 275 -VLPATSHYQVLIDAIKRYQANHVDQCIITKLDESLAVGGAISAVIESNLALGYLTDGQR 333

Query: 295 IND 297
           + +
Sbjct: 334 VPE 336


>gi|86150402|ref|ZP_01068628.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85839227|gb|EAQ56490.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni CF93-6]
          Length = 446

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 14/105 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  GVGK+T++ K++  ++  G KV+  +G+  ++    Q+K+ ADR  A+    
Sbjct: 91  LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKA----QIKLRADRLEANTPNL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           F+ +E+  +         ++   K   +LIID+   L++N +  A
Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIIDSIQTLYSNKVTSA 185


>gi|148926208|ref|ZP_01809893.1| putative DNA repair protein RadA (ATP-dependant protease)
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845379|gb|EDK22472.1| putative DNA repair protein RadA (ATP-dependant protease)
           [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 446

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 14/105 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  GVGK+T++ K++  ++  G KV+  +G+  ++    Q+K+ ADR  A+    
Sbjct: 91  LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKA----QIKLRADRLEANTPNL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           F+ +E+  +         ++   K   +LIID+   L++N +  A
Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIIDSIQTLYSNKVTSA 185


>gi|88596739|ref|ZP_01099976.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562817|ref|YP_002344596.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|17433166|sp|Q9PN90|RADA_CAMJE RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
           repair protein Sms homolog
 gi|88191580|gb|EAQ95552.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360523|emb|CAL35320.1| putative DNA repair protein RadA (ATP-dependant protease)
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926429|gb|ADC28781.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927265|gb|EFV06610.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315928959|gb|EFV08209.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 305]
          Length = 446

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 14/105 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  GVGK+T++ K++  ++  G KV+  +G+  ++    Q+K+ ADR  A+    
Sbjct: 91  LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKA----QIKLRADRLEANTPNL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           F+ +E+  +         ++   K   +LI+D+   L++N I  A
Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIVDSIQTLYSNKITSA 185


>gi|330685440|gb|EGG97096.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis
           VCU121]
          Length = 644

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P++KP N + S   H I ++G NGVGKTT+I  ++++    G +V   A          Q
Sbjct: 344 PITKPINMEVSKGDH-IAIIGPNGVGKTTLIKTIAQRQRQLGGEVTFGANLKIGYYDQKQ 402

Query: 158 LKIWADRTSADFVCSE 173
            +  +++T  D+V  +
Sbjct: 403 AEFKSNKTILDYVWDQ 418


>gi|170725988|ref|YP_001760014.1| flagellar biosynthesis regulator FlhF [Shewanella woodyi ATCC
           51908]
 gi|169811335|gb|ACA85919.1| GTP-binding signal recognition particle SRP54 G- domain [Shewanella
           woodyi ATCC 51908]
          Length = 467

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 109/252 (43%), Gaps = 30/252 (11%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           +G  +  K++E   +   A  +S     Y  +EL+  +   L+   +    D   +  V+
Sbjct: 194 VGAMLESKLLEAEFSPMVATKLSDLSEHYQPAELVKALPRCLANMLDNQGDDIVRQGGVV 253

Query: 115 LVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
             VG  GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +
Sbjct: 254 AFVGPTGVGKTTTVAKLAARFAAHHGSDQVALITTDHYRIGAFEQLATYGKIMGCPVKQA 313

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHAPH 231
              ++   + Y      Q +   +++IDT           AG+G+  +R+ ++LD  A +
Sbjct: 314 HDLNELEQILY------QFRNRKLVLIDT-----------AGMGQRDLRLFQQLDNLAAN 356

Query: 232 SVLQ-----VLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           S L      VL AT  +  L   V  F  +   +G ++TK+D +      + +++   +P
Sbjct: 357 SRLPIRSYLVLSATGQRRVLEDAVAQFKRIP-LSGAVLTKLDESVSLAPALSVLIQSGLP 415

Query: 286 VYFLGVGEGIND 297
           + ++  G+ + +
Sbjct: 416 LSYVTDGQRVPE 427


>gi|57238077|ref|YP_179326.1| DNA repair protein RadA [Campylobacter jejuni RM1221]
 gi|86152977|ref|ZP_01071182.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612483|ref|YP_001000880.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005790|ref|ZP_02271548.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 81-176]
 gi|57166881|gb|AAW35660.1| DNA repair protein RadA [Campylobacter jejuni RM1221]
 gi|85843862|gb|EAQ61072.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249173|gb|EAQ72134.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni 81-176]
 gi|315058637|gb|ADT72966.1| DNA repair protein RadA [Campylobacter jejuni subsp. jejuni S3]
          Length = 446

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 14/105 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  GVGK+T++ K++  ++  G KV+  +G+  ++    Q+K+ ADR  A+    
Sbjct: 91  LVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKA----QIKLRADRLEANTPNL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           F+ +E+  +         ++   K   +LI+D+   L++N I  A
Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIVDSIQTLYSNKITSA 185


>gi|124027685|ref|YP_001013005.1| hypothetical protein Hbut_0807 [Hyperthermus butylicus DSM 5456]
 gi|123978379|gb|ABM80660.1| hypothetical protein Hbut_0807 [Hyperthermus butylicus DSM 5456]
          Length = 107

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 30/39 (76%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +PH+++V G  GVGKTTV  +L+ ++S +G KV+LA+ D
Sbjct: 14  KPHIVIVTGKGGVGKTTVCIRLAYELSASGGKVLLASLD 52


>gi|37524561|ref|NP_927905.1| putative ABC transporter ATP-binding protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36783985|emb|CAE12850.1| ATP-binding protein YjjK [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 555

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 95/230 (41%), Gaps = 39/230 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  KI+E E LTK Y       RVL D                N +FS  +  ++ ++G 
Sbjct: 319 LGDKILEVENLTKSYG-----DRVLID----------------NLNFSLPKGAIVGIIGP 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   +S ++  D+G       V LA+ D FR    D+  +W + +    +   
Sbjct: 358 NGAGKSTLFRMISNQEQPDSGTITLGETVKLASVDQFRDNMDDKKTVWEEISGGQDIMRI 417

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
              E+ S A    +      Q K+V  L     GRLH   +L  G G M+
Sbjct: 418 GNFELPSRAYVGRFNFKGIDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|291326923|ref|ZP_06126371.2| ABC transporter, ATP-binding protein YjiK [Providencia rettgeri DSM
           1131]
 gi|291312549|gb|EFE53002.1| ABC transporter, ATP-binding protein YjiK [Providencia rettgeri DSM
           1131]
          Length = 548

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 93/225 (41%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L WIR+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWIRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E E L+K Y       RVL D                N +FS  +  ++ ++G 
Sbjct: 312 LGDKVIEVENLSKSYG-----DRVLID----------------NLNFSIPKGAIVGIIGP 350

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   +S ++  D+G       V +A+ D FR A  D   +W + ++   +   
Sbjct: 351 NGAGKSTLFRMISGQEQPDSGSITLGDTVKIASVDQFRDAMDDSKTVWEEISNGQDIMRI 410

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 411 GNFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455


>gi|221112103|ref|XP_002157121.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 209

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 6/117 (5%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVL-YDVSELIHKMLMPLSK 101
           +E+   L+ +D+ V + QK+   +      +  A   + +R++ + V + + K++ P  K
Sbjct: 43  KEICAALLEADVNVQLVQKLRANIKNAANFEEMAAGTNKRRLIQHTVFQELCKLVDPGVK 102

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
            +      + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+  I+ L
Sbjct: 103 AWQ-PIKGKNNVIMFVGLQGSGKTTTCTKLAYYYQRKGWKTCLVCADTFRADKINIL 158


>gi|298530156|ref|ZP_07017558.1| AAA ATPase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509530|gb|EFI33434.1| AAA ATPase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 21/110 (19%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           HRP V  ++G    GKTT++  + K++ DAG          F S   DQ +++ D  S  
Sbjct: 19  HRPEVAFLIGPRQAGKTTLMQIIQKELKDAG------ENTVFLSLDYDQDRVFFD--SQQ 70

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
            +  +I             + +  K   + ID  GRL N  I + G+  M
Sbjct: 71  HLLKKI-------------ELETGKSGFVFIDEIGRLDNAGIFLKGLQDM 107


>gi|126664992|ref|ZP_01735975.1| Flagellar GTP-binding protein [Marinobacter sp. ELB17]
 gi|126630362|gb|EBA00977.1| Flagellar GTP-binding protein [Marinobacter sp. ELB17]
          Length = 453

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 27/197 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  G GKTT IGKL+ +  +      + L   D +R AA +QL          FV
Sbjct: 248 VFALVGPTGAGKTTTIGKLAARYVLRHGADSLALITTDRYRVAAHEQL----------FV 297

Query: 171 CSEIGS------DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              I +      D +    E   +   ++  +++IDTAG    +      + ++ R   +
Sbjct: 298 FGRILNVPVRVVDESHPLDEILDELSDRR--LVLIDTAGLTSTDRGYQEQLAELARSHHK 355

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           +  H       V+ AT+    ++ V   + +A   G ++TK+D     G  +  V+   +
Sbjct: 356 IRTHL------VVSATSQPRIMKSVWHCYKMANLAGCVITKIDEALTLGEALGFVMETSL 409

Query: 285 PVYFLGVGEGI-NDLEP 300
           PV +   G+ I  DL P
Sbjct: 410 PVAWYTDGQKIPQDLHP 426


>gi|75908169|ref|YP_322465.1| cobalamin synthesis protein/P47K [Anabaena variabilis ATCC 29413]
 gi|75701894|gb|ABA21570.1| Cobalamin synthesis protein/P47K [Anabaena variabilis ATCC 29413]
          Length = 349

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 15/132 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRT----SA 167
           V ++ G  G GKTT++ ++ K   D  + V++   + F    ID QL +  D+     S 
Sbjct: 22  VTIITGFLGSGKTTLLNQILKNKHDLKVAVLV---NEFGDINIDSQLLVSVDQDMLELSN 78

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I        Y   ++ +  ++D L+I+T G      I++  +G  +R L  LD 
Sbjct: 79  GCICCTINDGLVDAVYRVLEREE--RIDYLVIETTGVADPLPIILTFLGTELRDLTNLD- 135

Query: 228 HAPHSVLQVLDA 239
               S+L V+DA
Sbjct: 136 ----SILTVVDA 143


>gi|113969437|ref|YP_733230.1| putative ABC transporter ATP-binding protein [Shewanella sp. MR-4]
 gi|114046665|ref|YP_737215.1| putative ABC transporter ATP-binding protein [Shewanella sp. MR-7]
 gi|113884121|gb|ABI38173.1| ABC transporter related [Shewanella sp. MR-4]
 gi|113888107|gb|ABI42158.1| ABC transporter related [Shewanella sp. MR-7]
          Length = 555

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 90/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQS---KGKARMARFEELNTTDYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E + LTK Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVIEVKNLTKSYG-----DRVLID----------------NLSFSIPKGAIVGIIGA 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS  +  D+G       V LA+ + FR +  D+  IW + +    +   
Sbjct: 358 NGAGKSTLFRMLSGSEQPDSGTIELGETVQLASVEQFRDSMNDKNTIWQEISGGQDIMRI 417

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 418 NNMEIPSRAYVGRFNFRGADQQKVIGTLSGGERNRVHLAKLLQAG 462


>gi|308048544|ref|YP_003912110.1| ABC transporter [Ferrimonas balearica DSM 9799]
 gi|307630734|gb|ADN75036.1| ABC transporter related protein [Ferrimonas balearica DSM 9799]
          Length = 554

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 92/224 (41%), Gaps = 42/224 (18%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K   + L W+R+  KG  + S        ++ SS   D   R E  +L I    G  +  
Sbjct: 267 KSIQKELEWVRQNPKGRQAKSKARMARFEELNSS---DYQKRNETNELFIPP--GPRLGD 321

Query: 65  KIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           K++E   LTK Y   V           LI  +   L K           ++ ++G NG G
Sbjct: 322 KVLEINHLTKSYNGRV-----------LIDDLSFTLPKG---------AIVGIIGPNGAG 361

Query: 124 KTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD----- 177
           K+T+   LS ++  D+G  V+   GDT + A++DQ +   D +   F     G D     
Sbjct: 362 KSTLFRMLSGQETPDSGEIVL---GDTVQLASVDQFRDSMDDSKTVFQEVSNGQDILKIG 418

Query: 178 ---AAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
                A AY +   FK   Q K+V  L     GRLH   +L AG
Sbjct: 419 SFEIPARAYVSRFNFKGTDQQKRVGELSGGERGRLHLAKLLQAG 462


>gi|91984111|gb|ABE68919.1| FlhF [Azospirillum brasilense]
          Length = 353

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 37/201 (18%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +++VG  G GKT ++ KL+ +       V +   DT R+  ++QL  +           E
Sbjct: 138 LILVGPPGSGKTLIVAKLAAQAVFRKRSVGVITTDTVRAGGMEQLAAFTRLMKIKLATVE 197

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN--------SILMAGIGKMIRVLKRL 225
              DA A A+E  + A     DV+++DTAGR   N        ++L AG+ + I VL   
Sbjct: 198 -DPDALAGAFEVSRGA-----DVVLVDTAGRNPYNREDMADLKALLSAGVAEPILVLP-- 249

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                      LDA    +     + F A+ G   +++T++D   R G L  +   H+  
Sbjct: 250 ---------AGLDAMEAADI---AQSFKAL-GVRRMLITRLDMARRLGSL--LGTAHRSR 294

Query: 286 VYFLG------VGEGINDLEP 300
           + F        V EG+  L P
Sbjct: 295 MAFCNASVSSKVAEGLTPLNP 315


>gi|219871118|ref|YP_002475493.1| antitoxin/toxin system zeta toxin, signal recognition particle
           GTPase [Haemophilus parasuis SH0165]
 gi|219691322|gb|ACL32545.1| anititoxin/toxin system zeta toxin, signal recognition particle
           GTPase [Haemophilus parasuis SH0165]
          Length = 220

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 4/103 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+ I+V GV+G GK+T I  L +K+S   L       D +R     +LK + ++   D 
Sbjct: 30  KPYAIVVAGVSGSGKSTCIANLLEKIS---LNYFPIQADDYRKFH-PKLKEYREKFGNDQ 85

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
              + G+ A   A E   +A  K++++L   T G +   + L+
Sbjct: 86  AHKKTGNFAHRFAIELLNKAFDKQLNILYETTFGNIETATNLL 128


>gi|226322934|ref|ZP_03798452.1| hypothetical protein COPCOM_00706 [Coprococcus comes ATCC 27758]
 gi|225208720|gb|EEG91074.1| hypothetical protein COPCOM_00706 [Coprococcus comes ATCC 27758]
          Length = 518

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           ++L++  +L+     PLSKP N+    R H I +VG NG+GKTT +
Sbjct: 323 KMLFETKDLVIGYDEPLSKPLNFQME-RGHKIAIVGTNGIGKTTFL 367


>gi|114332397|ref|YP_748619.1| flagellar biosynthesis regulator FlhF [Nitrosomonas eutropha C91]
 gi|114309411|gb|ABI60654.1| GTP-binding signal recognition particle SRP54, G- domain
           [Nitrosomonas eutropha C91]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 14/187 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  ++G  GVGKTT   KL+ +  +     KV L   D++R    +QL+I+         
Sbjct: 193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR 252

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +   D   + +E       +   +++IDT G    + +L     + I +L +      
Sbjct: 253 SIKDIEDLQLMLHE------LRGKHMVLIDTVGMSQRDQML----AEQIAMLSQCGTKIK 302

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H  L +L+AT+  + L +V   +      G I+TK+D +A  G  +  ++  K+ ++++ 
Sbjct: 303 H--LLLLNATSSGDTLDEVISAYQKHSIHGCIITKVDESASLGIALDAIIRRKLVLHYVT 360

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 361 NGQKVPE 367


>gi|117919542|ref|YP_868734.1| putative ABC transporter ATP-binding protein [Shewanella sp. ANA-3]
 gi|117611874|gb|ABK47328.1| ABC transporter related [Shewanella sp. ANA-3]
          Length = 555

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 89/225 (39%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQS---KGKARMARFEELNTTDYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   LTK Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSIPKGAIVGIIGA 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS  +  D+G       V LA+ + FR +  D+  IW + +    +   
Sbjct: 358 NGAGKSTLFRMLSGSEQPDSGTIELGETVQLASVEQFRDSMNDKNTIWQEISGGQDIMRI 417

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 418 NNMEIPSRAYVGRFNFRGADQQKVIGTLSGGERNRVHLAKLLQAG 462


>gi|17232214|ref|NP_488762.1| hypothetical protein all4722 [Nostoc sp. PCC 7120]
 gi|17133859|dbj|BAB76421.1| all4722 [Nostoc sp. PCC 7120]
          Length = 353

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 15/132 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRT----SA 167
           V ++ G  G GKTT++ ++ K   D  + V++   + F    ID QL +  D+     S 
Sbjct: 22  VTIITGFLGSGKTTLLNQILKNKHDLKVAVLV---NEFGDINIDSQLLVSVDQDMLELSN 78

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I        Y   ++ +  ++D L+I+T G      I++  +G  +R L  LD 
Sbjct: 79  GCICCTINDGLVDAVYRVLEREE--RIDYLVIETTGVADPLPIILTFLGTELRDLTNLD- 135

Query: 228 HAPHSVLQVLDA 239
               S+L V+DA
Sbjct: 136 ----SILTVVDA 143


>gi|294634703|ref|ZP_06713235.1| ABC transporter, ATP-binding protein YjiK [Edwardsiella tarda ATCC
           23685]
 gi|291091879|gb|EFE24440.1| ABC transporter, ATP-binding protein YjiK [Edwardsiella tarda ATCC
           23685]
          Length = 548

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 91/228 (39%), Gaps = 35/228 (15%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E          VS     Y   +LI  +   + K           ++ ++G NG
Sbjct: 312 LGDKVLE----------VSNLSKSYGDRQLIDNLSFAIPKG---------AIVGIIGPNG 352

Query: 122 VGKTTVIGKLS-KKMSDAG-----LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS--- 172
            GK+T+   +S ++  D+G       V+LA+ D FR A  D+  +W + +    +     
Sbjct: 353 AGKSTLFRMISGQEQPDSGDITLGETVVLASVDQFRDAMDDKKSVWEEVSGGQDIMRIGN 412

Query: 173 -EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            EI S A    +      Q K+V  L     GRLH   +L  G G M+
Sbjct: 413 FEIASRAYVGRFNFKGTDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459


>gi|172054929|ref|YP_001806256.1| hypothetical protein cce_4843 [Cyanothece sp. ATCC 51142]
 gi|171701210|gb|ACB54190.1| hypothetical protein cce_4843 [Cyanothece sp. ATCC 51142]
          Length = 346

 Score = 40.8 bits (94), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ---LKIWADRTSAD- 168
           V ++ G  G GKTT++ ++ +   D  + V++   + F    ID+   + + +D    D 
Sbjct: 22  VTIITGFLGSGKTTLLNQILQNKDDLKIAVLV---NEFGDINIDEKLLISVDSDMIELDN 78

Query: 169 -FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I        Y     A+ +KVD L+++T G      I++  +G  ++ L RLD 
Sbjct: 79  GCICCTINDGLINAVYRIL--AREEKVDYLVVETTGLADPLRIILTFLGTELKFLTRLD- 135

Query: 228 HAPHSVLQVLDA 239
               S++ V+DA
Sbjct: 136 ----SIITVVDA 143


>gi|239637780|ref|ZP_04678744.1| ATP-binding ABC transporter protein [Staphylococcus warneri L37603]
 gi|239596629|gb|EEQ79162.1| ATP-binding ABC transporter protein [Staphylococcus warneri L37603]
          Length = 644

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P++KP N + S   H I ++G NGVGKTT+I  ++++    G +V   A          Q
Sbjct: 344 PITKPINLEVSKGDH-IAIIGPNGVGKTTLIKTIAQRQRPLGGEVTFGANLQIGYYDQKQ 402

Query: 158 LKIWADRTSADFVCSE 173
            +  +++T  D+V  +
Sbjct: 403 AEFKSNKTILDYVWDQ 418


>gi|57168085|ref|ZP_00367224.1| DNA repair protein RadA [Campylobacter coli RM2228]
 gi|305431764|ref|ZP_07400931.1| DNA repair protein RadA [Campylobacter coli JV20]
 gi|57020459|gb|EAL57128.1| DNA repair protein RadA [Campylobacter coli RM2228]
 gi|304444848|gb|EFM37494.1| DNA repair protein RadA [Campylobacter coli JV20]
          Length = 446

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 14/106 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  GVGK+T++ K++  ++    KV+  +G+  ++    Q+K+ ADR  A+    
Sbjct: 91  LVLIGGSPGVGKSTLLLKIASNLAKKNKKVLYVSGEESKA----QIKLRADRLEANTPNL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           F+ +E+  +         ++   K  ++LIID+   L++N I  A 
Sbjct: 147 FLLTELCLE------NILEELHKKNYEILIIDSIQTLYSNKIASAA 186


>gi|253988005|ref|YP_003039361.1| ABC transporter ATP-binding protein [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779455|emb|CAQ82616.1| abc transporter atp-binding protein yjjk [Photorhabdus asymbiotica]
          Length = 555

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 94/230 (40%), Gaps = 39/230 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GSR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E E LTK Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVLEVENLTKSYG-----DRVLID----------------NLSFSLPKGAIVGIIGP 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS ++  D+G       V LA+ D FR    D+  +W + +    +   
Sbjct: 358 NGAGKSTLFRMLSNQEQPDSGTITLGETVKLASVDQFRDNMDDKKTVWEEISGGQDIMRI 417

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
              E+ S A    +      Q K+V  L     GRLH   +L  G G M+
Sbjct: 418 GNFELPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|242371717|ref|ZP_04817291.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis M23864:W1]
 gi|242350577|gb|EES42178.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis M23864:W1]
          Length = 643

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P N + S   H I V+G NGVGKTT+I  +++K  + G  +   A          Q
Sbjct: 343 PITEPINIEVSKGDH-IAVIGPNGVGKTTLIKTIAQKQDNLGGSITFGANLQIGYYDQKQ 401

Query: 158 LKIWADRTSADFVCSE 173
            +  +++T  D+V  +
Sbjct: 402 AEFKSNKTILDYVWDQ 417


>gi|157376183|ref|YP_001474783.1| flagellar biosynthesis regulator FlhF [Shewanella sediminis
           HAW-EB3]
 gi|157318557|gb|ABV37655.1| GTP-binding signal recognition particle SRP54, G-domain [Shewanella
           sediminis HAW-EB3]
          Length = 464

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 108/251 (43%), Gaps = 28/251 (11%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVI 114
           +G  +  K+++   +   A  +S     Y  +EL+  +   L+   +    D   +  V+
Sbjct: 192 VGAMLESKLLDAEFSPAVATKLSDLSEHYTPAELVRTLPRSLANMLDNQGDDIVRQGGVV 251

Query: 115 LVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
             VG  GVGKTT + KL+ +        +V L   D +R  A +QL  +          +
Sbjct: 252 AFVGPTGVGKTTTVAKLAARYVAHHGADQVALITTDHYRIGAFEQLATYGKIMGCPVKQA 311

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              S+   + Y      Q +   +++IDTAG    +          IR+ ++LD  A +S
Sbjct: 312 HDLSELEQILY------QFRNRKLVLIDTAGMGQRD----------IRLFQQLDNLAANS 355

Query: 233 VLQVLD----ATTGQNALRQ--VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            + +      ++TGQ  + +  V  F  +   +G ++TK+D +      + +++   +P+
Sbjct: 356 RIPIRSYLVLSSTGQRRVLEDAVAQFKRIP-LSGAVLTKLDESISLAPALSVLIQSGLPL 414

Query: 287 YFLGVGEGIND 297
            ++  G+ + +
Sbjct: 415 SYVTDGQRVPE 425


>gi|71906380|ref|YP_283967.1| flagellar biosynthesis regulator FlhF [Dechloromonas aromatica RCB]
 gi|71846001|gb|AAZ45497.1| GTP-binding signal recognition particle SRP54, G-domain
           [Dechloromonas aromatica RCB]
          Length = 487

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 20/196 (10%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V  +VG  GVGKTT   KL+ +  +     KV L   D +R  A +QL+I+  
Sbjct: 260 DIVDRGGVYALVGPTGVGKTTTTAKLAARCVLRHGPSKVALVTTDGYRIGAHEQLRIYGR 319

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                 V   +  DAA L  +   + Q K +  ++IDT G        M+   K++  L 
Sbjct: 320 ILG---VSVHLVKDAAEL-RQTLIELQHKHM--VLIDTMG--------MSQKDKLVPELT 365

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT--GLIMTKMDGTARGGGLIPIVVT 281
            +        L +L++T+  + L  V    A AG T  G I+TK+D  A     + +++ 
Sbjct: 366 DMLAGCAVQRLLLLNSTSRGDTLDDV--VRAYAGDTLAGCILTKIDEAASLATALDVIMR 423

Query: 282 HKIPVYFLGVGEGIND 297
           H + + ++  G+ + +
Sbjct: 424 HNLKLLYVSNGQRVPE 439


>gi|298490115|ref|YP_003720292.1| cobalamin synthesis protein P47K ['Nostoc azollae' 0708]
 gi|298232033|gb|ADI63169.1| cobalamin synthesis protein P47K ['Nostoc azollae' 0708]
          Length = 362

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-----SA 167
           V ++ G  G GKTT++  +          V++   + F    ID   I A        S 
Sbjct: 23  VTIITGFLGSGKTTLLNHILTNQQGVKTAVLV---NEFGEIGIDNELIVATENNMLELSN 79

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I +D     Y+  ++ +  K+D L+++T G      + M  +   +R+L RLD 
Sbjct: 80  GCICCTINNDLVDAVYKVLEREE--KLDYLVVETTGLADPLPVAMTFLSSELRILTRLD- 136

Query: 228 HAPHSVLQVLDATT 241
               S++ V+DAT 
Sbjct: 137 ----SIVTVVDATN 146


>gi|294140218|ref|YP_003556196.1| flagellar biosynthetic protein FlhF [Shewanella violacea DSS12]
 gi|293326687|dbj|BAJ01418.1| flagellar biosynthetic protein FlhF [Shewanella violacea DSS12]
          Length = 464

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 126/290 (43%), Gaps = 36/290 (12%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           + +  AS    L   +T ++S ++   D V   LE  L+ ++   AV++K+ E  L++ Y
Sbjct: 164 MREELASLRSLLTHQVTALMSEQKSRVDPVGAMLESKLLDAEFSPAVSKKLSE--LSEHY 221

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                V+ +   ++ ++             D   +  V+  VG  GVGKTT + KL+ + 
Sbjct: 222 TPADLVRALPRSLANMLDNQ--------GDDIVRQGGVVAFVGPTGVGKTTTLAKLAARY 273

Query: 136 S--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +       V L   D +R  A +QL  +          +   ++   + Y      Q + 
Sbjct: 274 AAHHGAEHVALITTDHYRIGAFEQLATYGKIMGCPVKQAHDLNELEQILY------QFRN 327

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD----ATTGQNALRQ- 248
             +++IDTAG    +          +R+ ++LD  A +S L +      ++TGQ  + + 
Sbjct: 328 RKLVLIDTAGMGQRD----------MRLFQQLDNLAANSRLPIRSYLVLSSTGQRRVLEE 377

Query: 249 -VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            V  F  +   +G I+TK+D +      + +++   +P+ ++  G+ + +
Sbjct: 378 AVTQFSRIP-LSGAILTKLDESVSLAPALSVLIQSGLPLSYVTDGQRVPE 426


>gi|237653598|ref|YP_002889912.1| flagellar biosynthesis regulator FlhF [Thauera sp. MZ1T]
 gi|237624845|gb|ACR01535.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thauera sp. MZ1T]
          Length = 489

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 50/261 (19%)

Query: 53  LIRSDIGVAVAQKIVEEL------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           L+ +    A+A+K+VE +      +  R A   ++ R++   +              + D
Sbjct: 223 LLEAGFSAAIARKLVEAVHEDADRIEAREAVGAALDRLMRACAS-------------DED 269

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              R  V  +VG  GVGKTT   KL+ +  +     ++ L   D +R  A +QL+I+   
Sbjct: 270 LLDRGGVYALVGPTGVGKTTTTAKLAARCVVRHGAGRLALITTDGYRIGAQEQLRIYGRI 329

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQA--KKVDVLIIDTAGRLHNNSI------LMAGIG 216
                      +D         +Q  A  +   +++IDT G    + +      +++G G
Sbjct: 330 LGVPVFSVRDAAD--------LRQTLAGLRNKHMVLIDTMGMSQRDRMVAEQAAMLSGAG 381

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            + R+L             +L+AT   + L  V   +A     G I TK+D  A     +
Sbjct: 382 DVRRLL-------------LLNATARGDTLDDVVRAYAGGDLAGCIFTKVDEAASLAPAL 428

Query: 277 PIVVTHKIPVYFLGVGEGIND 297
            + V H++ + +L  G+ + +
Sbjct: 429 DVAVRHELDIRYLTNGQRVPE 449


>gi|220917695|ref|YP_002492999.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955549|gb|ACL65933.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 380

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 20/217 (9%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLK 141
           R    V +L+ + L+P   P+  D      VI  VG  GVGKTT + K+ ++ + +   +
Sbjct: 162 RAWRAVKDLLGERLVPCRAPWLHDGRR---VIAAVGPTGVGKTTTLAKVAARALLETRKR 218

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           V     DT+R    +QL  +A        V  + G    AL        +   VD++++D
Sbjct: 219 VAFVTVDTYRLGGAEQLARYAGIMEVPVLVARDRGELGRAL-------ERLSDVDLVLLD 271

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAG  H +   +     ++R + R+  H     L V  A          + + A+A    
Sbjct: 272 TAG--HASVEDVERQAALVRSVPRVQLH-----LTVSAAAGALELAAVADRYRALAPDR- 323

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           L++TK+D  A  G ++   V    P+  +  G+ + +
Sbjct: 324 LVLTKLDEAAGPGSVLSAAVRVCRPIACVTNGQRVPE 360


>gi|13541605|ref|NP_111293.1| GTPase [Thermoplasma volcanium GSS1]
 gi|14325004|dbj|BAB59930.1| guanylate kinase [Thermoplasma volcanium GSS1]
          Length = 315

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 14/111 (12%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           + ++ + H+I + G  GVGK+T+IG LSK +S+ G KV + A D   S+      +  +R
Sbjct: 40  YPYTGKAHIIGITGPPGVGKSTMIGILSKMLSEHGKKVSILAVDA--SSPFSGGTLLGNR 97

Query: 165 TSADFVCSEIGSDAAALAYEAF------------KQAQAKKVDVLIIDTAG 203
                + S+ G    ++A   F            K   A   D +II+T G
Sbjct: 98  IRMQEILSKYGIYMRSVANRGFTGGLSRSTWNIVKVLDASGSDYIIIETVG 148


>gi|84683571|ref|ZP_01011474.1| putative branched-chain amino acid ABC transporter, ATP-binding
           protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84668314|gb|EAQ14781.1| putative branched-chain amino acid ABC transporter, ATP-binding
           protein [Rhodobacterales bacterium HTCC2654]
          Length = 254

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 7/114 (6%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           ++G NG GKTT++G+LS  ++    +V++   D  R A   + ++   RT   F  S + 
Sbjct: 35  LIGPNGAGKTTLVGQLSGVIAPTSGQVLIGGEDVTRLAPAKRTRMGLVRT---FQISNLF 91

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +D   L       +Q +++ V     AGR   +SI  A    +IR + RL+PHA
Sbjct: 92  TDMTVLENVYLAVSQNRRMGVNPFRAAGR-DKDSIDRA--MDLIRKV-RLEPHA 141


>gi|311695195|gb|ADP98068.1| flagellar biosynthesis regulator FlhF [marine bacterium HP15]
          Length = 435

 Score = 40.4 bits (93), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 36/195 (18%)

Query: 116 VVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWA----------- 162
           +VG  G GKTT IGKL+ +  +      V L   D +R AA +QL ++            
Sbjct: 229 LVGPTGSGKTTTIGKLAARYVLKHGSDSVALVTTDRYRVAAHEQLFVFGRILNVPVRVVD 288

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           +  S D +  E+ SD                  +++IDTAG    +      + ++ R  
Sbjct: 289 ESHSLDDILDEL-SDR----------------HLVLIDTAGLTSADKGYQEQLAELARSH 331

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             +  H       V+ AT+    ++ V   + +A   G +MTK+D     G  +  V+  
Sbjct: 332 HNIKTHL------VVSATSQPRIMKSVWHCYKMANLAGCLMTKIDEALTLGESLGFVMET 385

Query: 283 KIPVYFLGVGEGIND 297
            +PV +   G+ I +
Sbjct: 386 GLPVAYYTDGQKIPE 400


>gi|206889549|ref|YP_002249861.1| flagellar GTP-binding protein, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741487|gb|ACI20544.1| flagellar GTP-binding protein, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 347

 Score = 40.4 bits (93), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 42/287 (14%)

Query: 12  SW------IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           SW       +++ K  A  SL L+E IT +  S  LDD  +  L + LI++++   +A  
Sbjct: 71  SWKFDHGVFKEIEKLKAEVSL-LRESITKLFPS--LDDISKRGLYNFLIKNNVEPYLALM 127

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++E+      A D++  R+  + +EL         K    +F      I   G+ GVGKT
Sbjct: 128 LLEK------ANDMNELRMAIE-NEL---------KTCRNNFDEEKGYIFY-GLPGVGKT 170

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T I K+ + + D   K+ML + D  R +++  +K      +    C     +     Y+ 
Sbjct: 171 TTIFKIGQSLKDNNKKIMLISLDQ-RISSVAYIK----EVALKLKCEAKFINEPKELYKI 225

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +   KK   L+IDT G ++   I +AG       LK L    P     ++DA+    +
Sbjct: 226 MHKEIDKK--NLLIDTPGDVN---ISLAG------ELKNLLKDMPIKKCLIMDASMSMQS 274

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
             ++      A    +  +K+D     G L  + V    PV F+  G
Sbjct: 275 SFKILKTMDTASVDCIGFSKIDLAQTYGNLYNLSVLSGKPVSFITSG 321


>gi|317493996|ref|ZP_07952412.1| ABC transporter [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917769|gb|EFV39112.1| ABC transporter [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 555

 Score = 40.4 bits (93), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNVEYQKRNETSELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + L+K Y   +           LI  +   L K           ++ ++G N
Sbjct: 319 LGDKVLEVQNLSKSYGDRL-----------LIEDLSFSLPKG---------AIVGIIGPN 358

Query: 121 GVGKTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S K        D G  V+LA+ D FR +  D+  +W + ++   +    
Sbjct: 359 GAGKSTLFRMISGKEQPDSGTIDLGETVVLASVDQFRDSMDDKKTVWEEVSNGQDIMRIG 418

Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             +  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 419 NFEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|268679515|ref|YP_003303946.1| DNA repair protein RadA [Sulfurospirillum deleyianum DSM 6946]
 gi|268617546|gb|ACZ11911.1| DNA repair protein RadA [Sulfurospirillum deleyianum DSM 6946]
          Length = 450

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 30/130 (23%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD----FV 170
           L+ G  GVGK+T++ K++  ++  G KV+  +G+   S    Q+K+ A+R  ++    ++
Sbjct: 94  LIGGSPGVGKSTLLLKIAGNLAREGKKVLYVSGEESSS----QIKLRANRVDSNYPTLYL 149

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            SEI  D        FK+ +    +VLIID+   +++  I                  AP
Sbjct: 150 LSEIRLDT------IFKELEKHAFEVLIIDSIQTIYSEKI----------------SSAP 187

Query: 231 HSVLQVLDAT 240
            SV QV + T
Sbjct: 188 GSVSQVREIT 197


>gi|229824207|ref|ZP_04450276.1| hypothetical protein GCWU000282_01511 [Catonella morbi ATCC 51271]
 gi|229786561|gb|EEP22675.1| hypothetical protein GCWU000282_01511 [Catonella morbi ATCC 51271]
          Length = 513

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 13/161 (8%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           R +++ ++L      PL+KP +  F  R   + ++G NG+GKTT++  L   +   G +V
Sbjct: 323 RFIFEANQLEIGYSQPLTKPLDLVFE-RNQKVAIIGANGIGKTTLLKSLMGLIPALGGQV 381

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
               GD       +Q     +R +          +A   A+ A  QA+ +        T+
Sbjct: 382 --EQGDYLEIGYFEQEVASGNRQTP--------LEAVWNAFPAMNQAEVRAALARCGLTS 431

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
             + +   +++G G+  +V   L  +APH+VL +LD  T  
Sbjct: 432 KHIESQIQVLSG-GEQAKVRLCLLMNAPHNVL-ILDEPTNH 470


>gi|226329252|ref|ZP_03804770.1| hypothetical protein PROPEN_03155 [Proteus penneri ATCC 35198]
 gi|225202438|gb|EEG84792.1| hypothetical protein PROPEN_03155 [Proteus penneri ATCC 35198]
          Length = 548

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  K   + L WIR+  KG  +   K K  +        +D   R E  +L I    G  
Sbjct: 257 ARHKSIQKELEWIRQNPKGRQA---KGKARLARFEELNSVDYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 312 LGDKVLEINNLTKSYG-----DRVLIDD--------LSFSIP-------KGAIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   +S ++  D+G  V+     LA+ D FR +  D   +W + +    +    
Sbjct: 352 GAGKSTLFRMISGQEQPDSGTLVLGDTVKLASVDQFRDSMDDSKTVWEEVSGGQDIMRIG 411

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GRLH   +L  G G M+
Sbjct: 412 NFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459


>gi|169839025|ref|ZP_02872213.1| Signal recognition particle, subunit FFH/SRP54 [candidate division
           TM7 single-cell isolate TM7a]
          Length = 99

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            P ++++ G+ G GKTT  GKL+K +   G K  L   D +R AA   +K
Sbjct: 37  NPTIVMLSGLQGAGKTTFSGKLAKHLKSKGEKPFLIGADVYRPAAKKAIK 86


>gi|172036405|ref|YP_001802906.1| hypothetical protein cce_1490 [Cyanothece sp. ATCC 51142]
 gi|171697859|gb|ACB50840.1| hypothetical protein cce_1490 [Cyanothece sp. ATCC 51142]
          Length = 345

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 15/134 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++ ++    +  GLKV +   + F    ID QL +  +    +   
Sbjct: 34  VTIITGFLGSGKTTLLNQILD--NKEGLKVAVLVNE-FGDINIDSQLLVSVEEDMVELGN 90

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I        Y   ++    KVD LII+T G      I++  +G  ++ L R+D 
Sbjct: 91  GCICCTINDSLIEAVYRVLEKEN--KVDYLIIETTGLADPLPIILTFLGTELKFLTRID- 147

Query: 228 HAPHSVLQVLDATT 241
               S++ V+DA T
Sbjct: 148 ----SIITVVDAET 157


>gi|16332336|ref|NP_443064.1| 47 kD protein [Synechocystis sp. PCC 6803]
 gi|1653966|dbj|BAA18876.1| 47 kD protein [Synechocystis sp. PCC 6803]
          Length = 383

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++  +       GLK  +   + F    ID +L I +D+   +   
Sbjct: 23  VTIITGFLGSGKTTLLNYILSNQQ--GLKTAVLVNE-FGEIGIDNELVIASDKNMVELSN 79

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             VC  I  D     Y+  ++ Q  K+D L+++T G      + +  +G  +R + RLD
Sbjct: 80  GCVCCTINEDLVEAVYKVLEREQ--KIDYLVVETTGLADPLPVALTFLGTELRDMTRLD 136


>gi|300869600|ref|ZP_07114180.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300332378|emb|CBN59380.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 358

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 15/134 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++ ++ K   D  + V++   + F    ID QL I  D    +   
Sbjct: 22  VTIITGFLGSGKTTLLNQILKNKQDLKVAVLV---NEFGDINIDSQLLISTDDDMVELTN 78

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I        Y   ++    ++D ++I+T G      I++  +G  +R L  LD 
Sbjct: 79  GCICCTINDGLLDAVYRVLERDD--RIDYMVIETTGVADPLPIILTFVGTELRDLTNLD- 135

Query: 228 HAPHSVLQVLDATT 241
               SVL V+DA T
Sbjct: 136 ----SVLTVIDAET 145


>gi|282899564|ref|ZP_06307528.1| Cobalamin synthesis protein/P47K [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195443|gb|EFA70376.1| Cobalamin synthesis protein/P47K [Cylindrospermopsis raciborskii
           CS-505]
          Length = 357

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 20/155 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++  +          V++   + F    ID +L +  D    +   
Sbjct: 21  VTIITGFLGSGKTTLLNHILTNQQGVKTAVLV---NEFGEIGIDNELIVTTDDNMVELSN 77

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I +D     Y+  ++ +  K+D L+++T G      + M  +G  +R L RLD 
Sbjct: 78  GCICCTINNDLVDAVYQVLEREE--KIDYLVVETTGLADPLPVAMTFLGSELRDLTRLD- 134

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
               S++ V+DA     A   +++F++ A  + ++
Sbjct: 135 ----SIITVVDA-----ANYSLDLFNSQAAHSQIV 160


>gi|309808818|ref|ZP_07702703.1| SRP54-type protein, helical bundle domain protein [Lactobacillus
           iners LactinV 01V1-a]
 gi|308167944|gb|EFO70077.1| SRP54-type protein, helical bundle domain protein [Lactobacillus
           iners LactinV 01V1-a]
          Length = 134

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 12/122 (9%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + S KL++ +  +     IS   ++   RE +   L+ +D+   V +K ++ +  +  
Sbjct: 3   FENLSEKLQKALRKLTGKGKISENDINQASRE-IRLALLEADVNFKVVKKFIKTIKAEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LS 132
           L+
Sbjct: 121 LA 122


>gi|188026522|ref|ZP_02962442.2| hypothetical protein PROSTU_04560 [Providencia stuartii ATCC 25827]
 gi|188019277|gb|EDU57317.1| hypothetical protein PROSTU_04560 [Providencia stuartii ATCC 25827]
          Length = 548

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L WIR+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWIRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E E L+K Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 312 LGDKVIEVENLSKSYG-----DRVLID----------------NLSFSIPKGAIVGIIGP 350

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   +S ++  D+G       V +A+ D FR +  D   +W + ++   +   
Sbjct: 351 NGAGKSTLFRMISGQEQPDSGTITLGDTVKIASVDQFRDSMDDSKTVWEEISNGQDIMRI 410

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 411 GNFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455


>gi|194290899|ref|YP_002006806.1| ABC transporter ATP-binding protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193224734|emb|CAQ70745.1| putative ATPase component of ABC transporter with duplicated ATPase
           domains [Cupriavidus taiwanensis LMG 19424]
          Length = 555

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 27/171 (15%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWDFSHRPHVIL-V 116
           +EL ++ Y K    Q +   V E +   ++     SK F       N  F   P  I+ +
Sbjct: 295 DELNSQEYQKRNETQEIFIPVGERLGNEVIEFDNVSKGFGDRMLIENLSFKVPPGAIVGI 354

Query: 117 VGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +G NG GK+T    L+ K+  D+G    +  G T + A +DQ +   D T   F     G
Sbjct: 355 IGPNGAGKSTFFKMLTGKEQPDSG---EIKIGPTVKMAFVDQSRDALDGTKTVFEEISGG 411

Query: 176 SDAAALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214
           +D   +  YE   +A           Q K+V  L     GRLH    L+AG
Sbjct: 412 ADVLTVGRYETPSRAYIGRFNFKGGDQQKQVGTLSGGERGRLHMAKTLIAG 462


>gi|73542750|ref|YP_297270.1| putative ABC transporter ATP-binding protein [Ralstonia eutropha
           JMP134]
 gi|72120163|gb|AAZ62426.1| ABC transporter related [Ralstonia eutropha JMP134]
          Length = 555

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 27/171 (15%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWDFSHRPHVIL-V 116
           +EL ++ Y K    Q +   V E +   ++     SK F       N  F   P  I+ +
Sbjct: 295 DELNSQEYQKRNETQEIFIPVGERLGNEVIEFDNVSKGFGDRMLIENLSFKVPPGAIVGI 354

Query: 117 VGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +G NG GK+T    L+ K+  D+G    +  G T + A +DQ +   D T   F     G
Sbjct: 355 IGPNGAGKSTFFKMLTGKEQPDSG---EIKIGPTVKMAFVDQSRDALDGTKTVFEEISGG 411

Query: 176 SDAAALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214
           +D   +  YE   +A           Q K+V  L     GRLH    L+AG
Sbjct: 412 ADVLTVGRYETPSRAYIGRFNFKGGDQQKQVGTLSGGERGRLHMAKTLIAG 462


>gi|118475538|ref|YP_891692.1| DNA repair protein RadA [Campylobacter fetus subsp. fetus 82-40]
 gi|118414764|gb|ABK83184.1| DNA repair protein RadA [Campylobacter fetus subsp. fetus 82-40]
          Length = 446

 Score = 40.0 bits (92), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 58/105 (55%), Gaps = 14/105 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  G+GK+T++ K+   ++++G KV+  +G+   +    Q+K+ A+R  A+    
Sbjct: 91  LVLIGGSPGIGKSTLLLKIGSNLANSGEKVLYVSGEESST----QIKLRANRLDANSENL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           ++ +EI  D+         +   K+  VLIID+   L+++ I  A
Sbjct: 147 YLLTEINLDS------ILAEISKKEYKVLIIDSIQTLYSDKITSA 185


>gi|197287515|ref|YP_002153387.1| ABC transporter ATP-binding protein [Proteus mirabilis HI4320]
 gi|194685002|emb|CAR47234.1| ABC transporter ATP-binding component [Proteus mirabilis HI4320]
          Length = 555

 Score = 40.0 bits (92), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 92/229 (40%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  K   + L WIR+  KG  +   K K  +        +D   R E  +L I    G  
Sbjct: 264 ARHKSIQKELEWIRQNPKGRQA---KGKARLARFEELNSVDYQKRNETSELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVLEVSHLTKSYG-----DRVLIDD--------LSFSIP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   +S ++  D+G       V LA+ D FR +  D   +W + +    +    
Sbjct: 359 GAGKSTLFRMISGQEQPDSGTVTLGETVKLASVDQFRDSMDDSKTVWEEVSGGQDIMRIG 418

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GRLH   +L  G G M+
Sbjct: 419 NFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|119897396|ref|YP_932609.1| flagellar biosynthesis regulator FlhF [Azoarcus sp. BH72]
 gi|119669809|emb|CAL93722.1| putative flagellar biosynthesis protein FlhF [Azoarcus sp. BH72]
          Length = 510

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 31/202 (15%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V  +VG  GVGKTT   KL+ +  +     K+ L   D +R  A +QL+I+  
Sbjct: 289 DLIDRGGVFALVGPTGVGKTTTTAKLAARCVVRHGASKLALITTDGYRIGAQEQLRIYGR 348

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDTAG------RLHNNSILMAGI 215
                       +D         +Q  A+ +   +++IDT G       +   + ++ G 
Sbjct: 349 ILGVPVFSVRDAAD--------LRQTLAELRNKHMVLIDTMGVSQRDRMVAEQAAMLTGA 400

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
           G++ R+L             +L+AT   + L  V   +A     G+I +K+D  A     
Sbjct: 401 GEVRRLL-------------LLNATCRGDTLDDVVRAYAGPDLAGVIFSKVDEAASLAPA 447

Query: 276 IPIVVTHKIPVYFLGVGEGIND 297
           I + V  K+ + ++  G+ + +
Sbjct: 448 IDVAVRRKLDLLYVTNGQRVPE 469


>gi|227358224|ref|ZP_03842565.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Proteus mirabilis ATCC 29906]
 gi|227161560|gb|EEI46597.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Proteus mirabilis ATCC 29906]
          Length = 548

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 92/229 (40%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  K   + L WIR+  KG  +   K K  +        +D   R E  +L I    G  
Sbjct: 257 ARHKSIQKELEWIRQNPKGRQA---KGKARLARFEELNSVDYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 312 LGDKVLEVSHLTKSYG-----DRVLIDD--------LSFSIP-------KGAIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   +S ++  D+G       V LA+ D FR +  D   +W + +    +    
Sbjct: 352 GAGKSTLFRMISGQEQPDSGTVTLGETVKLASVDQFRDSMDDSKTVWEEVSGGQDIMRIG 411

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GRLH   +L  G G M+
Sbjct: 412 NFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459


>gi|171910580|ref|ZP_02926050.1| hypothetical protein VspiD_05390 [Verrucomicrobium spinosum DSM
           4136]
          Length = 386

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 12/114 (10%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           M  P   P +     R   I++ G  G GKTT IGKL++ ++D GLKV L   D  ++  
Sbjct: 1   MSAPAPTPTSSPTKAR--YIMIGGFLGAGKTTAIGKLARHLTDQGLKVGLITND--QAGG 56

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK-----KVDVLIIDTAG 203
           +   K+   RT   F   EI        +     A AK     K DV I +  G
Sbjct: 57  LVDTKLL--RTQG-FATEEIAGGCFCCRFNTLVDAAAKLNDATKPDVFIAEPVG 107


>gi|290476502|ref|YP_003469407.1| putative ABC transporter ATP-binding protein [Xenorhabdus bovienii
           SS-2004]
 gi|289175840|emb|CBJ82643.1| putative transport protein (ABC superfamily, atp_bind) [Xenorhabdus
           bovienii SS-2004]
          Length = 555

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 92/229 (40%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L WIR+  KG  +   K K  +        +D   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWIRQNPKGRQA---KGKARLARFEELNNVDYQKRNETSELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y   V           LI  +   L K           ++ ++G N
Sbjct: 319 LGDKVLEVTNLTKSYGDRV-----------LIDNLSFALPKG---------AIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V LA+ + FR +  D+  +W + +    +    
Sbjct: 359 GAGKSTLFRMLSGQEQPDSGSITLGETVTLASVEQFRDSMDDKKTVWEEVSGGQDIMRIG 418

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GRLH   +L  G G M+
Sbjct: 419 NFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|163750018|ref|ZP_02157262.1| ABC transporter, ATP-binding protein [Shewanella benthica KT99]
 gi|161330292|gb|EDQ01273.1| ABC transporter, ATP-binding protein [Shewanella benthica KT99]
          Length = 555

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 34/170 (20%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L WIR+  KG  S          ++ SS   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWIRQGAKGRQSKGKARMARFEELNSS---DYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E + LTK Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVIEVKNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWAD 163
           NG GK+T+   ++  +  D+G       V LA+ D FR +  D+  +W +
Sbjct: 358 NGAGKSTLFKMITGAEQPDSGTIEIGESVKLASVDQFRDSMDDKKTVWQE 407


>gi|126658691|ref|ZP_01729836.1| hypothetical protein CY0110_32055 [Cyanothece sp. CCY0110]
 gi|126619953|gb|EAZ90677.1| hypothetical protein CY0110_32055 [Cyanothece sp. CCY0110]
          Length = 346

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 15/132 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++ ++ +   +  + V++   + F    ID QL I  D    +   
Sbjct: 22  VTIITGFLGSGKTTLLNQILQNKDNLKIAVLV---NEFGDINIDEQLLISVDSDMIELDN 78

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I        Y   ++ +  KVD L+I+T G      I++  +G  ++ L RLD 
Sbjct: 79  GCICCTINDGLVNAVYRVLEREE--KVDYLVIETTGLADPLPIILTFLGTELKFLTRLD- 135

Query: 228 HAPHSVLQVLDA 239
               +++ V+DA
Sbjct: 136 ----AIITVVDA 143


>gi|126175364|ref|YP_001051513.1| putative ABC transporter ATP-binding protein [Shewanella baltica
           OS155]
 gi|160876412|ref|YP_001555728.1| putative ABC transporter ATP-binding protein [Shewanella baltica
           OS195]
 gi|125998569|gb|ABN62644.1| ABC transporter related [Shewanella baltica OS155]
 gi|160861934|gb|ABX50468.1| ABC transporter related [Shewanella baltica OS195]
 gi|315268602|gb|ADT95455.1| ABC transporter related protein [Shewanella baltica OS678]
          Length = 555

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S          ++ ++   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGPKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   LTK Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS  +  D+G       V LA+ + FR +  D+  IW + +    +   
Sbjct: 358 NGAGKSTLFRMLSGAETPDSGTIELGDTVQLASVEQFRDSMNDKNTIWEEISGGQDIMRI 417

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 418 NNMEIPSRAYVGRFNFRGGDQQKVIGTLSGGERNRVHLAKLLQAG 462


>gi|121997282|ref|YP_001002069.1| GTP-binding signal recognition particle [Halorhodospira halophila
           SL1]
 gi|121588687|gb|ABM61267.1| GTP-binding signal recognition particle SRP54, G- domain
           [Halorhodospira halophila SL1]
          Length = 585

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 28/194 (14%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT + KL+ +  +     +V L + D +R  A DQL  +A        
Sbjct: 370 VYALVGPTGVGKTTTVAKLAARYALRHGREQVALVSTDNYRVGAQDQLLTYARILDVPV- 428

Query: 171 CSEIGSDAAALAYEAFKQAQAKKV-------DVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                       Y A  + + + +        +++IDT G +    + +A   K +   +
Sbjct: 429 ------------YTATNRHELRTIVDDLMDRGLVLIDTVG-MSQRDVRLAEQFKTLGSAE 475

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            L          VL A T    L +     A A   G I TK+D  +  GG +   +  K
Sbjct: 476 GL-----VKTYLVLSAATQMATLTESVSAFAGAEPVGCIFTKVDEASSLGGAMTCALRTK 530

Query: 284 IPVYFLGVGEGIND 297
           +P+ +L VG+ + +
Sbjct: 531 LPIAYLAVGQRVPE 544


>gi|120598054|ref|YP_962628.1| putative ABC transporter ATP-binding protein [Shewanella sp.
           W3-18-1]
 gi|120558147|gb|ABM24074.1| ABC transporter related [Shewanella sp. W3-18-1]
 gi|319427247|gb|ADV55321.1| REG family ATPase, YjjK [Shewanella putrefaciens 200]
          Length = 555

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S          ++ ++   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   LTK Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS  +  D+G       V LA+ + FR +  D+  IW + +    +   
Sbjct: 358 NGAGKSTLFRMLSGAETPDSGTIELGETVQLASVEQFRDSMNDKNTIWQEISGGQDIMRI 417

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 418 NNMEIPSRAYVGRFNFRGADQQKIIGTLSGGERNRVHLAKLLQAG 462


>gi|304410194|ref|ZP_07391813.1| ABC transporter related protein [Shewanella baltica OS183]
 gi|307302095|ref|ZP_07581853.1| ABC transporter related protein [Shewanella baltica BA175]
 gi|304351603|gb|EFM16002.1| ABC transporter related protein [Shewanella baltica OS183]
 gi|306914133|gb|EFN44554.1| ABC transporter related protein [Shewanella baltica BA175]
          Length = 555

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S          ++ ++   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   LTK Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS  +  D+G       V LA+ + FR +  D+  IW + +    +   
Sbjct: 358 NGAGKSTLFRMLSGAETPDSGTIELGDTVQLASVEQFRDSMNDKNTIWEEISGGQDIMRI 417

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 418 NNMEIPSRAYVGRFNFRGGDQQKVIGTLSGGERNRVHLAKLLQAG 462


>gi|88860933|ref|ZP_01135569.1| adenosine 5'-phosphosulfate kinase [Pseudoalteromonas tunicata D2]
 gi|88817146|gb|EAR26965.1| adenosine 5'-phosphosulfate kinase [Pseudoalteromonas tunicata D2]
          Length = 198

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 23/44 (52%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            HRP +I   G +G GK+TV G L   +  AG+   L  GD  R
Sbjct: 22  QHRPCIIWFTGFSGSGKSTVAGALEHALHQAGVHTYLLDGDNVR 65


>gi|167760716|ref|ZP_02432843.1| hypothetical protein CLOSCI_03101 [Clostridium scindens ATCC 35704]
 gi|167661603|gb|EDS05733.1| hypothetical protein CLOSCI_03101 [Clostridium scindens ATCC 35704]
          Length = 518

 Score = 39.7 bits (91), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIG----KLSKKMSDAGLKVMLAAGDTFRSAAIDQ-LKI 160
           D   +P V  + G+NG+GK+TV+     +L + ++ + L+      D+F S  ID+  + 
Sbjct: 21  DMPLKPDVYAITGINGIGKSTVLSSIAPRLVRPINFSMLRPFDYTDDSFISFTIDENTEK 80

Query: 161 WADRTSADFVCS 172
           W  +T+  + CS
Sbjct: 81  WQPQTNGRWTCS 92


>gi|218192281|gb|EEC74708.1| hypothetical protein OsI_10425 [Oryza sativa Indica Group]
          Length = 505

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF----RSAA 154
           +S+ F   + HRP++I  +G  G+     I ++ K  SD G+K +    DTF    RSA+
Sbjct: 78  VSRAFRRSWQHRPNLIFCIGTLGLDFINKIDRIIKNHSDIGIKSLQLEYDTFCNARRSAS 137

Query: 155 ID-QLKIW 161
           I   L  W
Sbjct: 138 ISYHLNNW 145


>gi|91227653|ref|ZP_01261930.1| ABC transporter, ATP-binding protein [Vibrio alginolyticus 12G01]
 gi|254230252|ref|ZP_04923643.1| ABC transporter, ATP-binding protein [Vibrio sp. Ex25]
 gi|262395171|ref|YP_003287025.1| ABC transporter ATP-binding protein [Vibrio sp. Ex25]
 gi|91188432|gb|EAS74726.1| ABC transporter, ATP-binding protein [Vibrio alginolyticus 12G01]
 gi|151937232|gb|EDN56099.1| ABC transporter, ATP-binding protein [Vibrio sp. Ex25]
 gi|262338765|gb|ACY52560.1| ABC transporter ATP-binding protein [Vibrio sp. Ex25]
          Length = 555

 Score = 39.7 bits (91), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 30/178 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+RK  KG  + S        ++ SS   D   R E  +L I    G  
Sbjct: 264 ARQKTIEKELEWVRKNPKGRQAKSKARMARFEELQSS---DHQKRNETNELFIPP--GER 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + LTK +       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVIEVKNLTKSFDG-----RVLIDD--------LSFSIP-------KGAIVGIIGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G GK+T+   LS  +  D+G   M   GDT + A++DQ +   D +   F     G+D
Sbjct: 359 GAGKSTLFKMLSGTEQPDSGTIEM---GDTVKLASVDQFRDSMDDSKTVFQEISEGAD 413


>gi|1213500|gb|AAC44500.1| signal recognition particle protein [Streptococcus mutans]
          Length = 142

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 71/142 (50%), Gaps = 11/142 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++   R+L +     V +E+   L+ +D+ + VA++ ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVAKEFIKRVRKRAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E +  +L   +       S  P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFR 151
           L+ K+  +   + ++ A D +R
Sbjct: 121 LANKLVKEENARPLMIAADIYR 142


>gi|225012383|ref|ZP_03702819.1| DNA repair protein RadA [Flavobacteria bacterium MS024-2A]
 gi|225003360|gb|EEG41334.1| DNA repair protein RadA [Flavobacteria bacterium MS024-2A]
          Length = 450

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 17/102 (16%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           VIL+ G  G+GK+T++ ++S  ++     V+  +G+  +     Q+K+ ADR   D    
Sbjct: 91  VILLGGEPGIGKSTLLLQVSLSLNST---VLYVSGEESQ----QQIKLRADRMELDGKKC 143

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           FV S+  +       + F+Q Q  K D++I+D+   LH+N I
Sbjct: 144 FVLSQTETQ------KIFQQIQKVKPDLVIVDSIQTLHSNYI 179


>gi|281418344|ref|ZP_06249364.1| DNA repair protein RadA [Clostridium thermocellum JW20]
 gi|281409746|gb|EFB40004.1| DNA repair protein RadA [Clostridium thermocellum JW20]
          Length = 454

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 31/134 (23%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +ILV G  G+GK+T++ ++  K+     K++  +G+     +I+Q+K+ ADR +      
Sbjct: 89  LILVGGDPGIGKSTLLLQICDKIK-TNAKILYVSGE----ESINQIKLRADRLNVR---- 139

Query: 173 EIGSDAAALAYEAFKQAQA----KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               +   L+   FK  QA    ++ D+++ID+   + N+ +                P 
Sbjct: 140 --NPNLLMLSETNFKVIQALSETERPDLIVIDSIQTMFNDEL----------------PS 181

Query: 229 APHSVLQVLDATTG 242
           AP SV QV + T+G
Sbjct: 182 APGSVSQVREITSG 195


>gi|330860092|emb|CBX70416.1| uncharacterized ABC transporter ATP-binding protein yjjK [Yersinia
           enterocolitica W22703]
          Length = 555

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E L+K Y   V           LI  +   L K           ++ ++G N
Sbjct: 319 LGDKVLEVEHLSKSYGDRV-----------LIDDLTFALPKG---------AIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V+LA+ D FR    D   +W + +    +    
Sbjct: 359 GAGKSTLFRMLSGQEQPDSGTISLGDTVLLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 418

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GR+H   +L  G G M+
Sbjct: 419 NFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 466


>gi|282897581|ref|ZP_06305581.1| Cobalamin synthesis protein/P47K [Raphidiopsis brookii D9]
 gi|281197504|gb|EFA72400.1| Cobalamin synthesis protein/P47K [Raphidiopsis brookii D9]
          Length = 359

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 20/155 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++  +          V++   + F    ID +L +  D    +   
Sbjct: 23  VTIITGFLGSGKTTLLNHILTNQQGVKTAVLV---NEFGEIGIDNELIVSTDDNMVELSN 79

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I +D     Y+  ++ +  K+D L+++T G      + M   G  +R L RLD 
Sbjct: 80  GCICCTINNDLVDAVYQVLEREE--KIDYLVVETTGLADPLPVAMTFFGSELRDLTRLD- 136

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
               S++ V+DA     A   +++F++ A  + ++
Sbjct: 137 ----SIITVVDA-----ANYSLDLFNSQAAHSQIV 162


>gi|119774150|ref|YP_926890.1| putative ABC transporter ATP-binding protein [Shewanella
           amazonensis SB2B]
 gi|119766650|gb|ABL99220.1| ABC transporter, ATP-binding protein [Shewanella amazonensis SB2B]
          Length = 555

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  S+ L W+R+  KG  S          ++ +S   D   R E  +L I    G  
Sbjct: 264 ARQKTISKELEWVRQGAKGRQSKGKARMNRFEELNNS---DYQRRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   LTK Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVIEVRNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357

Query: 120 NGVGKTTVIGKLS-KKMSDA-----GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS  +  D+     G  V +A+ + FR +  ++  IW + +    +   
Sbjct: 358 NGAGKSTLFRMLSGAEQPDSGEIEIGETVKIASVEQFRDSMNNKATIWEEISGGQDIMRI 417

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 418 NNMEIPSRAYVGRFNFRGADQQKIIGTLSGGERNRVHLAKLLQAG 462


>gi|24374978|ref|NP_719021.1| putative ABC transporter ATP-binding protein [Shewanella oneidensis
           MR-1]
 gi|24349704|gb|AAN56465.1|AE015783_8 ABC transporter, ATP-binding protein [Shewanella oneidensis MR-1]
          Length = 555

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S          ++ ++   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   LTK Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS  +  D+G       V LA+ + FR +  D+  IW + +    +   
Sbjct: 358 NGAGKSTLFRMLSGSEQPDSGSIELGETVQLASVEQFRDSMNDKNTIWQEISGGQDIMRI 417

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 418 NNMEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462


>gi|206896257|ref|YP_002246705.1| flagellar GTP-binding protein [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738874|gb|ACI17952.1| flagellar GTP-binding protein [Coprothermobacter proteolyticus DSM
           5265]
          Length = 331

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 36/204 (17%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG----DTFRSAAIDQLKIWA 162
           F   P V++++G  GVGKTT   KL+  +    L+  +++G    DTFR+ A++Q K++ 
Sbjct: 133 FQTFPKVVVLLGPTGVGKTTTAAKLAGYLL---LERNVSSGFVTIDTFRAGAVEQTKLFG 189

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQA-QAKKV-------DVLIIDTAGRLHNNSILMAG 214
                          A  L  E  ++  Q +KV         + +DT GR          
Sbjct: 190 --------------KAMNLPVEVVRRPHQMQKVLAKLPDAHYVFVDTIGRNPKE------ 229

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGG 273
           IGK+  +   LD       +  L+A   +  +++  E F+ V      I+TK+D      
Sbjct: 230 IGKLTEIKMYLDELEEWIPVLCLNAGLRKEEMQKAFEYFNKVFHIEYFILTKVDEAENIS 289

Query: 274 GLIPIVVTHKIPVYFLGVGEGIND 297
             +  +  + +    L  G+ + D
Sbjct: 290 SAVEFMAENGLKTLALTNGQNVPD 313


>gi|123440950|ref|YP_001004939.1| putative ABC transporter ATP-binding protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|332160219|ref|YP_004296796.1| putative ABC transporter ATP-binding protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|122087911|emb|CAL10699.1| ABC transporter protein, ATP-binding component [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|318607215|emb|CBY28713.1| ABC transporter, ATP-binding protein [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664449|gb|ADZ41093.1| putative ABC transporter ATP-binding protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 548

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E L+K Y   V           LI  +   L K           ++ ++G N
Sbjct: 312 LGDKVLEVEHLSKSYGDRV-----------LIDDLTFALPKG---------AIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V+LA+ D FR    D   +W + +    +    
Sbjct: 352 GAGKSTLFRMLSGQEQPDSGTISLGDTVLLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 411

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GR+H   +L  G G M+
Sbjct: 412 NFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459


>gi|294141973|ref|YP_003557951.1| ABC transporter ATP-binding protein [Shewanella violacea DSS12]
 gi|293328442|dbj|BAJ03173.1| ABC transporter, ATP-binding protein [Shewanella violacea DSS12]
          Length = 555

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 34/190 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S          ++ +S   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTS---DYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   LTK Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           NG GK+T+   ++ ++  D+G       V LA+ D FR +  D+  +W + +    +   
Sbjct: 358 NGAGKSTLFKMITGEEQPDSGTVEIGESVQLASVDQFRDSMDDKKTVWQEISGGQDIMRI 417

Query: 174 IGSDAAALAY 183
             ++  + AY
Sbjct: 418 NNTEVPSRAY 427


>gi|238786642|ref|ZP_04630443.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           frederiksenii ATCC 33641]
 gi|238725010|gb|EEQ16649.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           frederiksenii ATCC 33641]
          Length = 548

 Score = 39.3 bits (90), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E L+K Y   V           LI  +   L K           ++ ++G N
Sbjct: 312 LGDKVLEVEHLSKSYGDRV-----------LIDDLTFALPKG---------AIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V+LA+ D FR    D   +W + +    +    
Sbjct: 352 GAGKSTLFRMLSGQEQPDSGTISLGDTVLLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 411

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GR+H   +L  G G M+
Sbjct: 412 NFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459


>gi|153001674|ref|YP_001367355.1| putative ABC transporter ATP-binding protein [Shewanella baltica
           OS185]
 gi|217972393|ref|YP_002357144.1| putative ABC transporter ATP-binding protein [Shewanella baltica
           OS223]
 gi|151366292|gb|ABS09292.1| ABC transporter related [Shewanella baltica OS185]
 gi|217497528|gb|ACK45721.1| ABC transporter related [Shewanella baltica OS223]
          Length = 555

 Score = 39.3 bits (90), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S          ++ ++   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   LTK Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357

Query: 120 NGVGKTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS   +      + G  V LA+ + FR +  D+  IW + +    +   
Sbjct: 358 NGAGKSTLFRMLSGAETPDSGSIELGDTVQLASVEQFRDSMNDKNTIWEEISGGQDIMRI 417

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 418 NNMEIPSRAYVGRFNFRGGDQQKVIGTLSGGERNRVHLAKLLQAG 462


>gi|306819803|ref|ZP_07453458.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304552172|gb|EFM40108.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 517

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           RV+++  +L+     PLSKP N+    R   I + G NG+GKTT++  L
Sbjct: 323 RVIFETKDLVIGYDKPLSKPINFKLE-RNQKIAITGANGLGKTTLVKSL 370


>gi|110639980|ref|YP_680190.1| DNA repair protein RadA [Cytophaga hutchinsonii ATCC 33406]
 gi|110282661|gb|ABG60847.1| DNA repair protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 455

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 18/100 (18%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           ++L+ G  G+GK+T++ +++ K+S   +KV+  +G+     +  Q+K+ A+R        
Sbjct: 91  IVLIGGEPGIGKSTLMLQVALKLST--VKVLYVSGE----ESEQQIKMRAERI------- 137

Query: 173 EIGSDAAALAYEA-----FKQAQAKKVDVLIIDTAGRLHN 207
           E+ SDA  +  E      FKQ +  + +VLIID+   LH+
Sbjct: 138 EVPSDACYILTETSTQNIFKQIEMLQPEVLIIDSIQTLHS 177


>gi|120601711|ref|YP_966111.1| ABC transporter ATP-binding protein [Desulfovibrio vulgaris DP4]
 gi|120561940|gb|ABM27684.1| ABC transporter related protein [Desulfovibrio vulgaris DP4]
          Length = 560

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADF 169
           ++ +VG NG GKTT+   ++  +  DAG    L  GDT + A +DQ +  +   +T  + 
Sbjct: 356 IVGIVGPNGAGKTTLFKMIAGLEQPDAG---TLTVGDTVKLAYVDQNRESLTPGKTVYEL 412

Query: 170 VCS----------EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           +            E+ + A    +    Q Q KKVDVL      RLH   +L  G
Sbjct: 413 ISDGYDTVKLGTREVNARAYCSRFNFMGQDQQKKVDVLSGGERNRLHVARMLKEG 467


>gi|332140597|ref|YP_004426335.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550619|gb|AEA97337.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 477

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 21/153 (13%)

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT+R AA +QL  +          ++   + A L +      Q +   +++IDTAG    
Sbjct: 304 DTYRIAAYEQLATYGKIIGCTVRKAQTSEELADLLF------QLRHKRLVLIDTAGFSQR 357

Query: 208 NSILMAGI-----GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           +S L+  I     G+M +V K L          V  A T   AL+++   +     +G I
Sbjct: 358 DSRLIKQIKQFDNGQMPKVKKYL----------VAQANTQYPALQRIIKAYDDIELSGCI 407

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            TK+D     G ++   V +++PV ++  G+ +
Sbjct: 408 FTKLDECYSLGEVLSAAVEYQLPVSYVTDGQKV 440


>gi|301109261|ref|XP_002903711.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans
           T30-4]
 gi|262096714|gb|EEY54766.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans
           T30-4]
          Length = 319

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 17/110 (15%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +LVVG NG GK+T++  L+ K   A    ++   D+FR   ++ L+ +    SAD+    
Sbjct: 64  LLVVGGNGAGKSTLLSILAGKHLTADDTALIFGRDSFRDTTLNALRTF---VSADWGQRS 120

Query: 174 IGSDAAALAYEA--------------FKQAQAKKVDVLIIDTAGRLHNNS 209
           +     A+AY A                + + K + VL ID   RLH  S
Sbjct: 121 VAFATHAMAYSADMAVEEMMTKLQSEHPERRQKLLKVLRIDPKWRLHRLS 170


>gi|313676217|ref|YP_004054213.1| DNA repair protein rada [Marivirga tractuosa DSM 4126]
 gi|312942915|gb|ADR22105.1| DNA repair protein RadA [Marivirga tractuosa DSM 4126]
          Length = 454

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 58/102 (56%), Gaps = 16/102 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  G+GK+T++ +++ ++S+  LKV+  +G+     +  Q+K+ ADR   D    
Sbjct: 91  LVLIGGEPGIGKSTLMLQIALQLSN--LKVLYVSGEE----SAQQIKMRADRMEHDSKNC 144

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           F+ +E  +       + F++ +A   D+L+ID+   LH+  I
Sbjct: 145 FILTETHT------ADIFREVEALGPDLLVIDSIQTLHSPKI 180


>gi|94312152|ref|YP_585362.1| putative ABC transporter ATP-binding protein [Cupriavidus
           metallidurans CH34]
 gi|93356004|gb|ABF10093.1| putative fused transporter subunits of ABC superfamily: ATP-binding
           components [Cupriavidus metallidurans CH34]
          Length = 589

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 70/171 (40%), Gaps = 27/171 (15%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWDFSHRPHVIL-V 116
           +EL ++ Y K    Q +   V E +   ++     SK F       N  F   P  I+ +
Sbjct: 329 DELNSQEYQKRNETQEIFIPVGERLGNEVIEFDNVSKGFGDRMLIENLSFKVPPGAIVGI 388

Query: 117 VGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +G NG GK+T    L+ K+  D+G    +  G T + A +DQ +   D     F     G
Sbjct: 389 IGPNGAGKSTFFKMLTGKEQPDSG---EIKIGPTVKMAFVDQSRDALDGNKTVFEEISGG 445

Query: 176 SDAAALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214
           SD   +  YE   +A           Q K+V  L     GRLH    L+AG
Sbjct: 446 SDILTVGRYETPSRAYIGRFNFKGGDQQKQVGTLSGGERGRLHMAKTLIAG 496


>gi|16081583|ref|NP_393942.1| hypothetical protein Ta0464 [Thermoplasma acidophilum DSM 1728]
 gi|10639634|emb|CAC11606.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 321

 Score = 39.3 bits (90), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +  + R H+I + G  GVGK+T+IG LS+K+++ G KV + A D
Sbjct: 40  YGMTGRAHIIGITGPPGVGKSTMIGVLSRKLTEMGKKVSILAVD 83


>gi|83747510|ref|ZP_00944548.1| Hypothetical Protein RRSL_02748 [Ralstonia solanacearum UW551]
 gi|83725824|gb|EAP72964.1| Hypothetical Protein RRSL_02748 [Ralstonia solanacearum UW551]
          Length = 589

 Score = 38.9 bits (89), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 44/228 (19%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S K +    D ++S+      R E +++ I   +G  
Sbjct: 298 ARQKALKKELEWVRQNPKGRQAKS-KARLARFDELNSQEYQK--RNETQEIFI--PVGER 352

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119
           +  +++E   ++K Y       R+L D                N +F+     I+ ++G 
Sbjct: 353 LGNEVIEFTNVSKGYG-----DRLLID----------------NLNFTIPAGAIVGIIGP 391

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           NG GK+T+   L+ K+  DAG   M   G T + A +DQ +   D +   F     GSD 
Sbjct: 392 NGAGKSTLFRMLTGKEQPDAGTIKM---GPTVKLAYVDQSRDALDGSKTVFEEISGGSDI 448

Query: 179 AALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214
             +  YE   +A           Q K V  L     GRLH    L+AG
Sbjct: 449 LTVGRYETPSRAYIGRFNFKGGDQQKHVGTLSGGERGRLHLAKTLIAG 496


>gi|83591872|ref|YP_425624.1| GTP-binding signal recognition particle [Rhodospirillum rubrum ATCC
           11170]
 gi|83574786|gb|ABC21337.1| GTP-binding signal recognition particle SRP54, G-domain
           [Rhodospirillum rubrum ATCC 11170]
          Length = 368

 Score = 38.9 bits (89), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 16/168 (9%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P  IL+VG  G GKT  + KL+ +   +G  V +   D+ R+ A +QL  +      D  
Sbjct: 150 PRPILLVGPPGTGKTIAVAKLAARARLSGRAVGVITADSVRAGAQEQLAAFTRILEIDLK 209

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +  G D  A      +Q    +  V+ ID+ G    +   M  +  +I  +       P
Sbjct: 210 KAR-GPDGLATLVPNMQQ----QFGVIFIDSPGLNPFSQDDMDYLRALISAV-------P 257

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLI 276
                VL+A  G + +  +E+  A A  G + ++ T++D   R GG++
Sbjct: 258 MDAALVLNA--GTDPMEAMEIAEAFAEVGASRILATRLDMARRLGGIL 303


>gi|292489434|ref|YP_003532321.1| putative ABC transporter ATP-binding protein [Erwinia amylovora
           CFBP1430]
 gi|292898349|ref|YP_003537718.1| ABC transporter ATP-binding protein [Erwinia amylovora ATCC 49946]
 gi|291198197|emb|CBJ45303.1| ABC transporter, ATP-binding protein [Erwinia amylovora ATCC 49946]
 gi|291554868|emb|CBA22767.1| putative ABC transport system, ATP-binding component [Erwinia
           amylovora CFBP1430]
 gi|312173601|emb|CBX81855.1| putative ABC transport system, ATP-binding component [Erwinia
           amylovora ATCC BAA-2158]
          Length = 555

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 40/226 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E          VS  R  Y    LI  +   + K           ++ ++G NG
Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDDLTFSVPKG---------AIVGIIGPNG 359

Query: 122 VGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVCS 172
            GK+T+   +S ++  D+G  V+   GDT + A++DQ +        +W + +    +  
Sbjct: 360 AGKSTLFRMMSGQEQPDSGSIVL---GDTVKLASVDQFRDSMDNSKTVWEEVSGGQDIMR 416

Query: 173 EIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
              S+  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 417 IGNSEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|146293875|ref|YP_001184299.1| putative ABC transporter ATP-binding protein [Shewanella
           putrefaciens CN-32]
 gi|145565565|gb|ABP76500.1| ABC transporter related [Shewanella putrefaciens CN-32]
          Length = 555

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S          ++ ++   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   LTK Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS  +  D+G       V LA+ + FR +  D+  IW + +    +   
Sbjct: 358 NGAGKSTLFRMLSGAEKPDSGSIELGDTVQLASVEQFRDSMNDKNTIWQEISGGQDIMRI 417

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 418 NNMEIPSRAYVGRFNFRGADQQKIIGTLSGGERNRVHLAKLLQAG 462


>gi|315651279|ref|ZP_07904307.1| DNA repair protein RadA [Eubacterium saburreum DSM 3986]
 gi|315486431|gb|EFU76785.1| DNA repair protein RadA [Eubacterium saburreum DSM 3986]
          Length = 454

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 35/145 (24%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----- 164
           R  ++LV G  G+GK+T++ ++ K +SD+  KV+  +G+     ++ Q+K+ A R     
Sbjct: 88  RGSLVLVGGDPGIGKSTLLLQVCKNISDSKKKVLYISGEE----SLKQIKMRAKRIGDIT 143

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            +  F+C    ++   +    F    ++K DV++ID+   + N  +              
Sbjct: 144 ENLSFLCE---TNLNIIKETVF----SEKPDVVVIDSIQTMFNEEV-------------- 182

Query: 225 LDPHAPHSVLQVLDATTGQNALRQV 249
               AP SV QV ++T   N L QV
Sbjct: 183 --ASAPGSVSQVREST---NLLMQV 202


>gi|182412093|ref|YP_001817159.1| putative ABC transporter ATP-binding protein [Opitutus terrae
           PB90-1]
 gi|177839307|gb|ACB73559.1| ABC transporter related [Opitutus terrae PB90-1]
          Length = 561

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 90/226 (39%), Gaps = 44/226 (19%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           QK  +  L WIRK  K   + S         +     L + V E+  +  I    G  + 
Sbjct: 271 QKAMARELEWIRKSAKARVAKSQARISAYEAM-----LKENVAEKEREFEILIPPGPRLG 325

Query: 64  QKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNG 121
             +VE + LTK Y ++V  + V                     +F+  P  I+ V+G NG
Sbjct: 326 NLVVEAQKLTKSYGENVLFENV---------------------NFALPPGGIVGVIGPNG 364

Query: 122 VGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVCS 172
            GKTT+   ++  +  D G    L  GDT + A +DQ +        IW   +  + +  
Sbjct: 365 AGKTTMFKLITGAEQPDGG---TLRVGDTVKIAHVDQSRESLPDKATIWEAISGGEEILK 421

Query: 173 EIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
               +  + AY A   F  A Q KKV VL      R+H   +L +G
Sbjct: 422 LANREVNSRAYCAQFGFTGADQQKKVGVLSGGERNRVHLARLLKSG 467


>gi|241664393|ref|YP_002982753.1| ABC transporter ATP-binding protein [Ralstonia pickettii 12D]
 gi|309782938|ref|ZP_07677658.1| ABC transporter, ATP-binding protein [Ralstonia sp. 5_7_47FAA]
 gi|240866420|gb|ACS64081.1| ABC transporter related [Ralstonia pickettii 12D]
 gi|308918362|gb|EFP64039.1| ABC transporter, ATP-binding protein [Ralstonia sp. 5_7_47FAA]
          Length = 555

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 50/231 (21%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S K +    D ++S+      R E +++ I +  G  
Sbjct: 264 ARQKALKKELEWVRQNPKGRQAKS-KARLARFDELNSQEYQK--RNETQEIFIPA--GER 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119
           +  +++E + ++K Y       R+L D                N  F+  P  I+ ++G 
Sbjct: 319 LGNEVIEFQNVSKSYG-----DRLLID----------------NLSFTIPPGAIVGIIGP 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEI--G 175
           NG GK+T+   ++ K+  D+G    +  G T + A +DQ +   D  SAD  V  EI  G
Sbjct: 358 NGAGKSTLFRMITGKEQPDSG---TIKIGPTVKLAYVDQSR---DALSADKTVFEEISNG 411

Query: 176 SDAAALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214
           SD   +  YE   +A           Q K V  L     GRLH    L++G
Sbjct: 412 SDILTVGRYETPSRAYIGRFNFKGGDQQKHVGTLSGGERGRLHLAKTLISG 462


>gi|22299819|ref|NP_683066.1| hypothetical protein tlr2276 [Thermosynechococcus elongatus BP-1]
 gi|22296003|dbj|BAC09828.1| tlr2276 [Thermosynechococcus elongatus BP-1]
          Length = 352

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 15/132 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADR----TSA 167
           V ++ G  G GKTT++  +    +  GLK  +   + F    ID QL +  D      S 
Sbjct: 21  VTIITGFLGSGKTTLLNHI--LTNQEGLKTAVLVNE-FGEIGIDNQLLVSQDEGMVELSN 77

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I +D     Y   ++    KVD L+++T G      + +  +G  +R L RLD 
Sbjct: 78  GCICCTINNDLINAVYRVLERP--DKVDYLVVETTGLADPLPVALTFLGTDLRDLTRLD- 134

Query: 228 HAPHSVLQVLDA 239
               S++ V+DA
Sbjct: 135 ----SIITVVDA 142


>gi|329298444|ref|ZP_08255780.1| putative ABC transporter ATP-binding protein [Plautia stali
           symbiont]
          Length = 555

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + L+K Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVLEVKNLSKAYG-----DRVLIDD--------LSFSLP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W + +    +    
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGSIELGETVKLASVDQFRDAMDNSKTVWEEVSGGQDIMRIG 418

Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
            ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 419 NTEMPSRAYVGRFNFKGTDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|282166383|gb|ADA80399.1| FtsK/SpoIIIE family protein [Staphylococcus epidermidis]
          Length = 353

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           L+PL K  NWD S  PH  L+ GV G GK+  I  L K
Sbjct: 108 LIPLMKGVNWDISKEPHA-LITGVTGSGKSMFINYLFK 144


>gi|332346515|gb|AEE59848.1| plasmid partitioning protein ParA [Escherichia coli UMNK88]
          Length = 238

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 22/109 (20%)

Query: 107 FSHRPH---VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           F+H  +   +I VVG N  G GKTT+   L+  +++ G +V L  GD  R+AA    K  
Sbjct: 16  FTHHIYEVAMITVVGGNKGGSGKTTIASNLAIALANKGREVCLLNGDLQRTAA----KHH 71

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFK------QAQAKKVDVLIIDTAGR 204
           A+R +A  +        A    E F       QA  +K D +I+D AGR
Sbjct: 72  AEREAAGLL-------PAITLVEKFDNLTQTLQALNEKFDDVIVDVAGR 113


>gi|187930226|ref|YP_001900713.1| putative ABC transporter ATP-binding protein [Ralstonia pickettii
           12J]
 gi|187727116|gb|ACD28281.1| ABC transporter related [Ralstonia pickettii 12J]
          Length = 555

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 50/231 (21%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S K +    D ++S+      R E +++ I +  G  
Sbjct: 264 ARQKALKKELEWVRQNPKGRQAKS-KARLARFDELNSQEYQK--RNETQEIFIPA--GER 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119
           +  +++E + ++K Y       R+L D                N  F+  P  I+ ++G 
Sbjct: 319 LGNEVIEFQNVSKSYG-----DRLLID----------------NLSFTIPPGAIVGIIGP 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEI--G 175
           NG GK+T+   ++ K+  D+G    +  G T + A +DQ +   D  SAD  V  EI  G
Sbjct: 358 NGAGKSTLFRMITGKEQPDSG---TIKIGPTVKLAYVDQSR---DALSADKTVFEEISNG 411

Query: 176 SDAAALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214
           SD   +  YE   +A           Q K V  L     GRLH    L++G
Sbjct: 412 SDILTVGRYETPSRAYIGRFNFKGGDQQKHVGTLSGGERGRLHLAKTLISG 462


>gi|127512115|ref|YP_001093312.1| putative ABC transporter ATP-binding protein [Shewanella loihica
           PV-4]
 gi|126637410|gb|ABO23053.1| ABC transporter-related protein [Shewanella loihica PV-4]
          Length = 554

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S          ++ ++   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   LTK Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVIEVNNLTKSYG-----DRVLID----------------NLSFSVPKGAIVGIIGA 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC-- 171
           NG GK+T+   +S  +  D+G       V +A+ + FR A  D+  +W + +    +   
Sbjct: 358 NGAGKSTLFKMISGAEQPDSGSIEVGDTVQIASVEQFRDAMNDKATVWEEISGGQDIMRI 417

Query: 172 --SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             +EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 418 NNTEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462


>gi|289618754|emb|CBI54728.1| unnamed protein product [Sordaria macrospora]
          Length = 745

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-TSADFV 170
           H I   G  G GK+ V+  + K++   GLKV +AA     +  ++ +  W+    S    
Sbjct: 218 HNIFFTGSAGSGKSRVLKAIVKRLKSRGLKVQVAAPTGKAAFNVNGMTTWSYAGWSPGLT 277

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
              I       AY    + + KK DVLIID    + N+  
Sbjct: 278 GQSIKDLVFQSAYTEAARKRIKKTDVLIIDEISMVENHHF 317


>gi|300721706|ref|YP_003710982.1| putative ABC transporter ATP-binding protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628199|emb|CBJ88754.1| putative transport protein (ABC superfamily, atp_bind) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 555

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 94/230 (40%), Gaps = 39/230 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNNVEYQKRNETSELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E   LTK Y       RVL D                + +FS  +  ++ ++G 
Sbjct: 319 LGDKVLEVTNLTKSYG-----DRVLID----------------DLNFSLPKGAIVGIIGP 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS ++  D+G       V LA+ D FR    D   +W + +    +   
Sbjct: 358 NGAGKSTLFHMLSGQEQPDSGSITLGETVKLASVDQFRDNMDDSKTVWEEVSGGQDIMRI 417

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
              EI S A    +      Q K+V  L     GRLH + +L  G G M+
Sbjct: 418 GNFEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLSKLLQVG-GNML 466


>gi|38154361|gb|AAR12163.1| signal recognition particle [Streptococcus agalactiae]
          Length = 51

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +DGTA+GG ++ I     IPV F+G GE I+D+  F ++DF
Sbjct: 2   IDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGEFNSEDF 42


>gi|237807322|ref|YP_002891762.1| putative ABC transporter ATP-binding protein [Tolumonas auensis DSM
           9187]
 gi|237499583|gb|ACQ92176.1| ABC transporter related [Tolumonas auensis DSM 9187]
          Length = 555

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  + S   K  ++        D   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQNPKGRQAKS---KARLSRFEELNGQDYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E E L+K Y       R L D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVIEVEGLSKSYG-----DRQLID----------------NLSFSIPKGAIVGIIGP 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   LS K+  D+G       V+LA+ D FR +  D+  ++ +  +   +   
Sbjct: 358 NGAGKSTLFRMLSGKEQPDSGTITLGETVVLASVDQFRDSMDDKKTVFDEVANGQDILKI 417

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              EI S A    +      Q K+V  L     GRLH   +L  G
Sbjct: 418 GNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQTG 462


>gi|75909921|ref|YP_324217.1| cobalamin synthesis protein/P47K [Anabaena variabilis ATCC 29413]
 gi|75703646|gb|ABA23322.1| Cobalamin synthesis protein/P47K [Anabaena variabilis ATCC 29413]
          Length = 379

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 20/150 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRT----SA 167
           V ++ G  G GKTT++  +       GLK  +   + F    ID +L +  D      S 
Sbjct: 10  VTIITGFLGSGKTTLLNHILSNQQ--GLKTAVLVNE-FGEIGIDNELIVSTDENMVELSN 66

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I +D     Y+  ++ +  K+D L+++T G      + +  +G  +R L RLD 
Sbjct: 67  GCICCTINNDLVDAVYKVLEKEE--KLDYLVVETTGLADPLPVALTFLGTELRDLTRLD- 123

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
               S++ V+DA     A   +++F++ A 
Sbjct: 124 ----SIITVVDA-----ANYSLDLFNSQAA 144


>gi|239995149|ref|ZP_04715673.1| flagellar biosynthesis protein [Alteromonas macleodii ATCC 27126]
          Length = 469

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 21/153 (13%)

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT+R AA +QL  +          ++   + A L +      Q +   +++IDTAG    
Sbjct: 296 DTYRIAAYEQLATYGKIIGCTVRKAQTSEELADLLF------QLRHKRLVLIDTAGFSQR 349

Query: 208 NSILMAGI-----GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           +S L+  I     G+M  V K L          V  A T   AL+++   +     +G I
Sbjct: 350 DSRLIKQIKQFDNGQMPNVKKYL----------VAQANTQYPALQRIIQAYDDIELSGCI 399

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            TK+D     G ++   V +++PV ++  G+ +
Sbjct: 400 FTKLDECYSLGEVLSAAVEYQLPVSYVTDGQKV 432


>gi|220934509|ref|YP_002513408.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995819|gb|ACL72421.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 424

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 26/196 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG +GVGKTT + KL+ +         + L   D +R  A  QL+ +         
Sbjct: 205 VIALVGPSGVGKTTTVAKLAARHVQRHGRGSIALVTTDAYRIGAYRQLQTFGQILGVPVH 264

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDP 227
            ++ G     +      + +      + +DTAG    +  L   MAG+  + R+      
Sbjct: 265 LAQTGRQLGDILLGLGDKQR------IFVDTAGMSQRDLRLAEEMAGLAAIPRL------ 312

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                 L V+ A   Q  L   E F A      TG ++TK+D  A  G ++  +    +P
Sbjct: 313 ----RTLLVVAANAQQAVLE--ETFRAFGHLPLTGAVLTKVDEAASLGPVLSALSHGDLP 366

Query: 286 VYFLGVGEGI-NDLEP 300
           + ++  G+ +  DL+P
Sbjct: 367 LLYVSEGQRVPEDLQP 382


>gi|125974290|ref|YP_001038200.1| DNA repair protein RadA [Clostridium thermocellum ATCC 27405]
 gi|125714515|gb|ABN53007.1| DNA repair protein RadA [Clostridium thermocellum ATCC 27405]
          Length = 454

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 31/134 (23%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +ILV G  G+GK+T++ ++  K+     K++  +G+     +I Q+K+ ADR +      
Sbjct: 89  LILVGGDPGIGKSTLLLQICDKIK-TNAKILYVSGE----ESIKQIKLRADRLNVR---- 139

Query: 173 EIGSDAAALAYEAFKQAQA----KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               +   L+   FK  QA    ++ D+++ID+   + N+ +                P 
Sbjct: 140 --NPNLLMLSETNFKVIQALSETERPDLIVIDSIQTMFNDEL----------------PS 181

Query: 229 APHSVLQVLDATTG 242
           AP SV QV + T+G
Sbjct: 182 APGSVSQVREITSG 195


>gi|312795908|ref|YP_004028830.1| ABC transporter ATP-binding protein [Burkholderia rhizoxinica HKI
           454]
 gi|312167683|emb|CBW74686.1| ABC transporter ATP-binding protein [Burkholderia rhizoxinica HKI
           454]
          Length = 643

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 52/232 (22%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S   K  I        ++   R E +++ I   +G  
Sbjct: 352 ARQKAIHKELEWVRQNPKGRQAKS---KARIARFEELNSVEYQKRNETQEIFI--PVGER 406

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119
           +  +++E + ++K +       R+L D                N  FS  P  I+ ++G 
Sbjct: 407 LGNEVIEFQNVSKSFG-----DRLLID----------------NLSFSVPPGAIVGIIGP 445

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADFVCSEIGS 176
           NG GK+T+   ++ ++  D G    +  G T + A +DQ +  + AD+T    V  EI  
Sbjct: 446 NGAGKSTLFRMITGREQPDCG---TVKLGPTVKLAYVDQSRDALAADKT----VFEEISG 498

Query: 177 DAAALA---YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214
            A  L    YE   +A           Q K+V  L     GRLH    L+AG
Sbjct: 499 GADVLTVGRYETPSRAYIGRFNFRGADQQKQVGNLSGGERGRLHMAKTLIAG 550


>gi|308185579|ref|YP_003929710.1| ABC transport system, ATP-binding protein [Pantoea vagans C9-1]
 gi|308056089|gb|ADO08261.1| Putative ABC transport system, ATP-binding protein [Pantoea vagans
           C9-1]
          Length = 555

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+RK  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRKGPKGQQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVLEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G  V+     LA+ D FR +  +   +W + +    +    
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGSIVLGETVKLASVDQFRDSMDNSKTVWEEVSGGQDIMRIG 418

Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|59711164|ref|YP_203940.1| putative ABC transporter ATP-binding protein [Vibrio fischeri
           ES114]
 gi|197335282|ref|YP_002155315.1| ABC transporter ATP-binding protein [Vibrio fischeri MJ11]
 gi|59479265|gb|AAW85052.1| fused predicted transporter subunits of ABC superfamily:
           ATP-binding components [Vibrio fischeri ES114]
 gi|197316772|gb|ACH66219.1| ABC transporter ATP-binding protein [Vibrio fischeri MJ11]
          Length = 555

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 30/178 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S        ++ SS   D   R E  +L I    G  
Sbjct: 264 ARQKTIEKELEWVRQNPKGRQAKSKARMARFEELQSS---DHQKRNETNELFIPP--GER 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK +       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVLEVNNLTKSFG-----DRVLIDD--------LSFSMP-------KGAIVGIIGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G GK+T+   LS  +  D+G    +  G+T + A++DQ +   D T   F     G+D
Sbjct: 359 GAGKSTLFKMLSGAETPDSG---TIELGETVKLASVDQFRDSMDDTKTVFQEISEGAD 413


>gi|46580990|ref|YP_011798.1| putative ABC transporter ATP-binding protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450410|gb|AAS97058.1| ABC transporter, ATP-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234678|gb|ADP87532.1| ABC transporter related protein [Desulfovibrio vulgaris RCH1]
          Length = 560

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADF 169
           ++ +VG NG GKTT+   ++  +  DAG    L  GDT + A +DQ +  +   +T  + 
Sbjct: 356 IVGIVGPNGAGKTTLFKIIAGLEQPDAG---TLTVGDTVKLAYVDQNRESLTPGKTVYEL 412

Query: 170 VCS----------EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           +            E+ + A    +    Q Q KKVDVL      RLH   +L  G
Sbjct: 413 ISDGYDTVKLGTREVNARAYCSRFNFMGQDQQKKVDVLSGGERNRLHVARMLKEG 467


>gi|260771119|ref|ZP_05880046.1| ABC transporter ATP-binding protein [Vibrio furnissii CIP 102972]
 gi|260613716|gb|EEX38908.1| ABC transporter ATP-binding protein [Vibrio furnissii CIP 102972]
          Length = 555

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 28/159 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+RK  KG  + S        ++ S+   D   R E  +L I    G  
Sbjct: 264 ARQKTIEKELEWVRKNPKGRQAKSKARMARFEELQST---DHQKRNETNELFIPP--GER 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E    K  +K    + ++ D+S       MP           +  ++ ++G NG
Sbjct: 319 LGDKVIE---VKNLSKSFDGRLLIDDLS-----FNMP-----------KGAIVGIIGANG 359

Query: 122 VGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLK 159
            GK+T+   LS  +  D+G   M   GDT + A++DQ +
Sbjct: 360 AGKSTLFKMLSGVEQPDSGTIEM---GDTVKLASVDQFR 395


>gi|256003492|ref|ZP_05428482.1| DNA repair protein RadA [Clostridium thermocellum DSM 2360]
 gi|255992516|gb|EEU02608.1| DNA repair protein RadA [Clostridium thermocellum DSM 2360]
 gi|316941439|gb|ADU75473.1| DNA repair protein RadA [Clostridium thermocellum DSM 1313]
          Length = 454

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 31/134 (23%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +ILV G  G+GK+T++ ++  K+     K++  +G+     +I Q+K+ ADR +      
Sbjct: 89  LILVGGDPGIGKSTLLLQICDKIK-TNAKILYVSGE----ESIKQIKLRADRLNVR---- 139

Query: 173 EIGSDAAALAYEAFKQAQA----KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               +   L+   FK  QA    ++ D+++ID+   + N+ +                P 
Sbjct: 140 --NPNLLMLSETNFKVIQALSETERPDLIVIDSIQTMFNDEL----------------PS 181

Query: 229 APHSVLQVLDATTG 242
           AP SV QV + T+G
Sbjct: 182 APGSVSQVREITSG 195


>gi|254508956|ref|ZP_05121063.1| ABC transporter, ATP-binding protein [Vibrio parahaemolyticus 16]
 gi|219548131|gb|EED25149.1| ABC transporter, ATP-binding protein [Vibrio parahaemolyticus 16]
          Length = 555

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 30/160 (18%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  S S        ++ S  R     R E  +L I    G  
Sbjct: 264 ARQKTIEKELEWVRQNPKGRQSKSKARMARFEELQSGDRQK---RNETNELFIPP--GER 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK +       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVIEVNNLTKSFDG-----RVLIDD--------LSFSIP-------KGAIVGIIGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           G GK+T+   LS  +  DAG   M   GDT + A++DQ +
Sbjct: 359 GAGKSTLFKMLSGTEQPDAGTIEM---GDTVKLASVDQFR 395


>gi|254422347|ref|ZP_05036065.1| CobW/P47K family protein [Synechococcus sp. PCC 7335]
 gi|196189836|gb|EDX84800.1| CobW/P47K family protein [Synechococcus sp. PCC 7335]
          Length = 399

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 17/162 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ---LKIWADRT---S 166
           V ++ G  G GKTT++  +       GLK  +   + F    ID    +K   D     S
Sbjct: 21  VTIITGFLGSGKTTLLNHILTNQE--GLKTAVLVNE-FGEVGIDNDLLIKTSDDNMVELS 77

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +C  I +D     Y+  +++   K+D L+++T G      + +  +G  +R L RLD
Sbjct: 78  NGCICCTINNDLLEAVYKVLERSD--KIDYLVVETTGLADPLPVALTFLGTELRDLTRLD 135

Query: 227 PHAPHSVLQVLDATTGQ-NALRQVEMFHAVAGTTGLIMTKMD 267
                S++ V+DA     +       ++ +A    +++ KMD
Sbjct: 136 -----SIVTVVDAENYSLDLFNSQAAYNQIAYGDIILLNKMD 172


>gi|224532285|ref|ZP_03672917.1| ATP-dependent Clp protease, subunit C [Borrelia valaisiana VS116]
 gi|224511750|gb|EEF82156.1| ATP-dependent Clp protease, subunit C [Borrelia valaisiana VS116]
          Length = 739

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 18/128 (14%)

Query: 46  REEL-EDLLIRSD---------IGVAVAQKIVEELLTKRYAKDVSVQRVL---YDVSELI 92
           +EEL +D +I SD         + +  A  I EE+L  +  ++   Q+V+   + VSE I
Sbjct: 398 KEELTKDNIITSDDIQKAINEILSIKTANNIKEEILELKEVENKINQKVIGQKHAVSEFI 457

Query: 93  HKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTF 150
            K ++ +    N DF  +P   IL++G NG GKTT+  +LSKK + D    + L   D  
Sbjct: 458 -KEIIKVKLGLNDDF--KPLTSILLIGSNGCGKTTLTDELSKKIIKDQNSILKLDMSDYR 514

Query: 151 RSAAIDQL 158
              +I +L
Sbjct: 515 EENSISKL 522


>gi|294140273|ref|YP_003556251.1| adenylylsulfate kinase [Shewanella violacea DSS12]
 gi|293326742|dbj|BAJ01473.1| adenylylsulfate kinase [Shewanella violacea DSS12]
          Length = 215

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           HRP V+   G++G GK+T+   + K + D G K  L  GD  R
Sbjct: 36  HRPAVLWFTGLSGSGKSTLANAVDKMLHDIGCKTYLLDGDNVR 78


>gi|325965510|ref|YP_004243414.1| plasmid segregation oscillating ATPase ParF [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323471597|gb|ADX75280.1| plasmid segregation oscillating ATPase ParF [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 210

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 19/100 (19%)

Query: 113 VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA-DRTSAD- 168
           +I+VVG    GVGK+TV+  L+ +++  G+++ +  GD  RS A      WA DR  A  
Sbjct: 1   MIIVVGSEKGGVGKSTVVTNLAVELAKRGMRIAVVDGDRQRSTA-----RWAGDREEAGH 55

Query: 169 ----FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               FV  ++GS      +E  ++      DV+++D AG+
Sbjct: 56  EPRIFVVEKLGS-----LHETLRELDT-SYDVVLVDVAGK 89


>gi|207721794|ref|YP_002252232.1| atp-binding protein [Ralstonia solanacearum MolK2]
 gi|207744470|ref|YP_002260862.1| atp-binding protein [Ralstonia solanacearum IPO1609]
 gi|206586958|emb|CAQ17542.1| atp-binding protein [Ralstonia solanacearum MolK2]
 gi|206595876|emb|CAQ62803.1| atp-binding protein [Ralstonia solanacearum IPO1609]
          Length = 548

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 44/228 (19%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S K +    D ++S+      R E +++ I   +G  
Sbjct: 257 ARQKALKKELEWVRQNPKGRQAKS-KARLARFDELNSQEYQK--RNETQEIFI--PVGER 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119
           +  +++E   ++K Y       R+L D                N +F+     I+ ++G 
Sbjct: 312 LGNEVIEFTNVSKGYG-----DRLLID----------------NLNFTIPAGAIVGIIGP 350

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           NG GK+T+   L+ K+  DAG   M   G T + A +DQ +   D +   F     GSD 
Sbjct: 351 NGAGKSTLFRMLTGKEQPDAGTIKM---GPTVKLAYVDQSRDALDGSKTVFEEISGGSDI 407

Query: 179 AALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214
             +  YE   +A           Q K V  L     GRLH    L+AG
Sbjct: 408 LTVGRYETPSRAYIGRFNFKGGDQQKHVGTLSGGERGRLHLAKTLIAG 455


>gi|304396485|ref|ZP_07378366.1| ABC transporter related protein [Pantoea sp. aB]
 gi|304355994|gb|EFM20360.1| ABC transporter related protein [Pantoea sp. aB]
          Length = 555

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+RK  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRKGPKGQQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVLEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G  V+     LA+ D FR +  +   +W + +    +    
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGSIVLGETVKLASVDQFRDSMDNSKTVWEEVSGGQDIMRIG 418

Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|242238015|ref|YP_002986196.1| ABC transporter ATP-binding protein [Dickeya dadantii Ech703]
 gi|242130072|gb|ACS84374.1| ABC transporter related [Dickeya dadantii Ech703]
          Length = 572

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 282 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFDELNNVEYQKRNETSELFIPP--GPR 336

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y   V +  + +++                     +  ++ ++G N
Sbjct: 337 LGDKVLEVAALTKSYGDRVLIDNLSFNIP--------------------KGAIVGIIGPN 376

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  DAG       V LA+ D FR +  +   +W + +    +    
Sbjct: 377 GAGKSTLFRLLSGQEQPDAGTMTLGDTVQLASVDQFRDSMDNNKTVWEEVSGGQDIMRIG 436

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K++  L     GR+H   +L  G G M+
Sbjct: 437 NFEIPSRAYVGRFNFKGVDQGKRIGELSGGERGRVHLAKLLQVG-GNML 484


>gi|153951878|ref|YP_001397703.1| DNA repair protein RadA [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939324|gb|ABS44065.1| DNA repair protein RadA [Campylobacter jejuni subsp. doylei 269.97]
          Length = 446

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 14/106 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  GVGK+T++ K++  ++    KV+  +G+  ++    Q+K+ ADR  A+    
Sbjct: 91  LVLIGGSPGVGKSTLLLKIASNLAKQDKKVLYVSGEESKA----QIKLRADRLEANTPNL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           F+ +E+  +         ++   K   +LI+D+   L++N I  A 
Sbjct: 147 FLLTELCLE------NILEELHKKDYSILIVDSIQTLYSNKITSAA 186


>gi|291551082|emb|CBL27344.1| ATPase components of ABC transporters with duplicated ATPase
           domains [Ruminococcus torques L2-14]
          Length = 518

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           ++L++  +L+     PLSKP N+    R   I +VG NG+GKTT++
Sbjct: 323 KMLFETKDLVTGYDEPLSKPLNFSME-RGQKIALVGTNGIGKTTLL 367


>gi|312884665|ref|ZP_07744366.1| adenylylsulfate kinase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367578|gb|EFP95129.1| adenylylsulfate kinase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 205

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            +P V+   G++G GK+T+ G L  ++++AG    L  GD  R
Sbjct: 30  QKPAVLWFTGLSGAGKSTIAGALETRLANAGFHTYLLDGDNVR 72


>gi|17228588|ref|NP_485136.1| hypothetical protein alr1093 [Nostoc sp. PCC 7120]
 gi|17130439|dbj|BAB73050.1| alr1093 [Nostoc sp. PCC 7120]
          Length = 374

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 21/163 (12%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QL 158
           S+P +      P V ++ G  G GKTT++  +       GLK  +   + F    ID +L
Sbjct: 9   SQPMDAPKQGMP-VTIITGFLGSGKTTLLNHILSNQQ--GLKTAVLVNE-FGEIGIDNEL 64

Query: 159 KIWADRT----SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +  D      S   +C  I +D     Y+  ++ +  K+D L+++T G      + +  
Sbjct: 65  IVSTDENMVELSNGCICCTINNDLVDAVYKVLEREE--KLDYLVVETTGLADPLPVALTF 122

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +G  +R L RLD     S++ V+DA     A   +++F++ A 
Sbjct: 123 LGTELRDLTRLD-----SIITVVDA-----ANYSLDLFNSQAA 155


>gi|261250354|ref|ZP_05942930.1| ABC transporter ATP-binding protein [Vibrio orientalis CIP 102891]
 gi|260939470|gb|EEX95456.1| ABC transporter ATP-binding protein [Vibrio orientalis CIP 102891]
          Length = 555

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 30/178 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S        ++ S    D   R E  +L I    G  
Sbjct: 264 ARQKTIEKELEWVRQNPKGRQAKSKARMARFEELQSG---DHQKRNETNELFIPP--GER 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK +       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVIEVNNLTKSFDG-----RVLIDD--------LSFSMP-------KGAIVGIIGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G GK+T+   LS  +  DAG   M   GDT + A++DQ +   D +   F     G+D
Sbjct: 359 GAGKSTLFKMLSGTEQPDAGTIEM---GDTVKLASVDQFRDSMDDSKTVFQEISEGAD 413


>gi|56750595|ref|YP_171296.1| hypothetical protein syc0586_c [Synechococcus elongatus PCC 6301]
 gi|81299765|ref|YP_399973.1| hypothetical protein Synpcc7942_0956 [Synechococcus elongatus PCC
           7942]
 gi|56685554|dbj|BAD78776.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168646|gb|ABB56986.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 380

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 24/157 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-- 170
           V ++ G  G GKTT++  +          V++   + F    ID   I +  TS D V  
Sbjct: 21  VTIITGFLGSGKTTLLNHILTNQQGVKTAVLV---NEFGEIGIDNELIVS--TSEDMVEL 75

Query: 171 -----CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                C  I SD     Y   ++ +  K+D L+++T G      + +  +G  +R L RL
Sbjct: 76  SNGCICCTINSDLMDAVYRVLERPE--KIDYLVVETTGLADPLPVALTFLGSELRDLTRL 133

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           D     S++ V+DA         +++F++ A    L+
Sbjct: 134 D-----SIVTVVDAEN-----YSLDLFNSQAAYNQLL 160


>gi|289613812|emb|CBI59347.1| unnamed protein product [Sordaria macrospora]
          Length = 344

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKI 160
           RP VI + GV GVGKTT++  L++ + +  GL  ++ + D F     DQLK+
Sbjct: 57  RPFVIGLNGVQGVGKTTLVKALAETLQEREGLNTLVVSIDDFYLTHEDQLKL 108


>gi|313901499|ref|ZP_07834949.1| GTP-binding signal recognition particle SRP54 G- domain
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468237|gb|EFR63701.1| GTP-binding signal recognition particle SRP54 G- domain
           [Thermaerobacter subterraneus DSM 13965]
          Length = 460

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 102 PFNWDFSHRP--HVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQL 158
           P  +  + RP   V+ V+G  G GKTT + KL+ + + D G  V L A DT+R  A   L
Sbjct: 179 PLRFPPAGRPLAGVVAVLGPTGAGKTTTVAKLAARAVLDEGRDVALLAADTYRLGATRSL 238

Query: 159 KIWAD 163
             +A+
Sbjct: 239 AAYAE 243


>gi|225375913|ref|ZP_03753134.1| hypothetical protein ROSEINA2194_01549 [Roseburia inulinivorans DSM
           16841]
 gi|225212234|gb|EEG94588.1| hypothetical protein ROSEINA2194_01549 [Roseburia inulinivorans DSM
           16841]
          Length = 220

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           R +++  +L+     PLSKP N     R H I +VG NG+GKTT++
Sbjct: 25  RYIFETKDLVIGYDEPLSKPLNISM-ERGHKIALVGANGIGKTTLL 69


>gi|242241814|ref|ZP_04796259.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis W23144]
 gi|242234732|gb|EES37043.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis W23144]
          Length = 644

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P N +     H I ++G NGVGKTT+I  +++K    G +++  A          Q
Sbjct: 343 PITRPINLEVFKGDH-IAIIGPNGVGKTTLIKTIAEKHPKLGGQIIFGANLQIGYYDQKQ 401

Query: 158 LKIWADRTSADFVCSE 173
            +  +++T  D+V  +
Sbjct: 402 AEFKSNKTILDYVWDQ 417


>gi|187777834|ref|ZP_02994307.1| hypothetical protein CLOSPO_01426 [Clostridium sporogenes ATCC
           15579]
 gi|187774762|gb|EDU38564.1| hypothetical protein CLOSPO_01426 [Clostridium sporogenes ATCC
           15579]
          Length = 509

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L
Sbjct: 313 ENIIFNASNLIIGYNTPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 361


>gi|114562210|ref|YP_749723.1| putative ABC transporter ATP-binding protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333503|gb|ABI70885.1| ABC transporter related [Shewanella frigidimarina NCIMB 400]
          Length = 555

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQS---KGKARMARFEELNTNDYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y   V +  + + V                     +  ++ ++G N
Sbjct: 319 LGDKVIEVTNLTKSYGDRVLIDDLTFTVP--------------------KGAIVGIIGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC--- 171
           G GK+T+   +S ++  D+G       V +A+ D FR +  D+  +W + +    +    
Sbjct: 359 GAGKSTLFKMISGEEQPDSGSISVGDSVQIASVDQFRDSMNDKNTVWQEISGGQDIMRIN 418

Query: 172 -SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 419 NTEISSRAYVGRFNFRGGDQQKIIGSLSGGERNRVHLAKLLQAG 462


>gi|13541683|ref|NP_111371.1| 2-phosphoglycerate kinase [Thermoplasma volcanium GSS1]
          Length = 203

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 31/154 (20%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +IL+ GV GVGKT++ G L++++   G+ +ML +GD  R                +F+  
Sbjct: 5   IILIGGVPGVGKTSISGFLAREL---GIDIML-SGDYLR----------------EFLRP 44

Query: 173 EIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             G +       Y+A+ QA  +K D  I+   G +    I+MAGI    R+L R   +  
Sbjct: 45  LFGDNPLIQKSVYDAW-QAYGQKTDENIV--KGYIDQAKIMMAGID---RILIRAIENGE 98

Query: 231 HSVLQV---LDATTGQNALRQVEMFHAVAGTTGL 261
           + +L+    L     + A   V MF+   G   L
Sbjct: 99  NLILETLYFLPEMLSEKARNNVHMFYLYIGDEKL 132


>gi|150015567|ref|YP_001307821.1| ABC transporter [Clostridium beijerinckii NCIMB 8052]
 gi|149902032|gb|ABR32865.1| ABC transporter related [Clostridium beijerinckii NCIMB 8052]
          Length = 518

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +V+++  +L+     PL+KP N  F  R   I++VG NG+GK+T++  L
Sbjct: 323 KVIFETKDLVIGYTSPLTKPLNM-FMERGQKIVLVGANGLGKSTLLKSL 370


>gi|315179276|gb|ADT86190.1| hypothetical ABC transporter ATP-binding protein [Vibrio furnissii
           NCTC 11218]
          Length = 443

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 28/159 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+RK  KG  + S        ++ S+   D   R E  +L I    G  
Sbjct: 264 ARQKTIEKELEWVRKNPKGRQAKSKARMARFEELQST---DHQKRNETNELFIPP--GER 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E    K  +K    + ++ D+S       MP           +  ++ ++G NG
Sbjct: 319 LGDKVIE---VKNLSKSFDGRLLIDDLS-----FNMP-----------KGAIVGIIGANG 359

Query: 122 VGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLK 159
            GK+T+   LS  +  D+G   M   GDT + A++DQ +
Sbjct: 360 AGKSTLFKMLSGVEQPDSGTIEM---GDTVKLASVDQFR 395


>gi|296101171|ref|YP_003611317.1| hypothetical protein ECL_00804 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055630|gb|ADF60368.1| conserved hypothetical protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 555

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 92/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+ TKG  S   K K  +         +   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGTKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K+VE   L K Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVVEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S       I
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGSITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMRI 417

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 418 GNTEMPSRAYVGRFNFKGTDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|14325083|dbj|BAB60008.1| 2-phosphoglycerate kinase [Thermoplasma volcanium GSS1]
          Length = 208

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 31/154 (20%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +IL+ GV GVGKT++ G L++++   G+ +ML +GD  R                +F+  
Sbjct: 10  IILIGGVPGVGKTSISGFLAREL---GIDIML-SGDYLR----------------EFLRP 49

Query: 173 EIGSDA--AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             G +       Y+A+ QA  +K D  I+   G +    I+MAGI    R+L R   +  
Sbjct: 50  LFGDNPLIQKSVYDAW-QAYGQKTDENIV--KGYIDQAKIMMAGID---RILIRAIENGE 103

Query: 231 HSVLQV---LDATTGQNALRQVEMFHAVAGTTGL 261
           + +L+    L     + A   V MF+   G   L
Sbjct: 104 NLILETLYFLPEMLSEKARNNVHMFYLYIGDEKL 137


>gi|327396422|dbj|BAK13844.1| ABC transporter ATP-binding protein YjjK [Pantoea ananatis AJ13355]
          Length = 548

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+RK  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRKGPKGQQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 312 LGDKVLEVSNLRKSYG-----DRVLIDG--------LSFSVP-------KGAIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G  V+     LA+ D FR +  +   +W + +    +    
Sbjct: 352 GAGKSTLFRMMSGQEQPDSGEIVLGETVKLASVDQFRDSMDNAKTVWEEVSGGQDIMRIG 411

Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 412 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459


>gi|317485256|ref|ZP_07944137.1| ABC transporter [Bilophila wadsworthia 3_1_6]
 gi|316923547|gb|EFV44752.1| ABC transporter [Bilophila wadsworthia 3_1_6]
          Length = 560

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 113 VILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADF 169
           ++ ++G NG GKTT+   L  ++  DAG    L  GDT + A +DQ +  +   +T  + 
Sbjct: 356 IVGIIGPNGAGKTTLFKMLVGQEKPDAG---TLTIGDTVQFAYVDQQRESLTPGKTVYEL 412

Query: 170 VCS----------EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           +            EI + A    +      Q KKVDVL      R+H   +L +G
Sbjct: 413 ISDGAETIKLGNREINARAYCSRFNFTGSDQQKKVDVLSGGERNRVHTARMLKSG 467


>gi|168183402|ref|ZP_02618066.1| ABC transporter, ATP-binding protein [Clostridium botulinum Bf]
 gi|182673469|gb|EDT85430.1| ABC transporter, ATP-binding protein [Clostridium botulinum Bf]
          Length = 517

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L
Sbjct: 321 ENIIFNASNLIIGYNTPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369


>gi|332305674|ref|YP_004433525.1| flagellar biosynthetic protein FlhF [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173003|gb|AEE22257.1| flagellar biosynthetic protein FlhF [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 442

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 11/148 (7%)

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D++R AA +Q+  +A         ++   + + L +      Q +   +++IDTAG    
Sbjct: 266 DSYRIAAYEQISTYARIIGCSVKKAQNAEELSDLLF------QFRNKRLILIDTAGFGQR 319

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  L+    K +  LK+      +S L V+ A +    ++Q    +      G I TK+D
Sbjct: 320 DVRLI----KQLETLKQSTTANINSYL-VMQANSQYQVMQQTIAAYKQISLQGCIFTKID 374

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGI 295
                G  I   + HK+PV F+  G+ +
Sbjct: 375 ECYSLGEAISAAIEHKLPVSFITDGQKV 402


>gi|182417095|ref|ZP_02948473.1| ATPase component of ABC transporter [Clostridium butyricum 5521]
 gi|237667863|ref|ZP_04527847.1| drug resistance ABC transporter, RA1 family, ATP-binding protein
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379104|gb|EDT76608.1| ATPase component of ABC transporter [Clostridium butyricum 5521]
 gi|237656211|gb|EEP53767.1| drug resistance ABC transporter, RA1 family, ATP-binding protein
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 518

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           +V+++  +L+     PL+KP N  +  R   I +VG NG+GK+T++  L  K+     +V
Sbjct: 323 KVIFETKDLVIGYDSPLTKPLNL-YMERGQKIALVGANGLGKSTLLKSLLGKIKPLSGEV 381

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            L  GD       +Q     DRT     C E
Sbjct: 382 HL--GDYQYIGYFEQ----EDRTDNKNTCIE 406


>gi|153855387|ref|ZP_01996536.1| hypothetical protein DORLON_02550 [Dorea longicatena DSM 13814]
 gi|149752207|gb|EDM62138.1| hypothetical protein DORLON_02550 [Dorea longicatena DSM 13814]
          Length = 518

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           ++L++  +L+     PLSKP N+    R   I +VG NG+GKTT++
Sbjct: 323 KMLFETHDLVTGYDEPLSKPLNFSME-RGQKIALVGTNGIGKTTLL 367


>gi|291616183|ref|YP_003518925.1| YjjK [Pantoea ananatis LMG 20103]
 gi|291151213|gb|ADD75797.1| YjjK [Pantoea ananatis LMG 20103]
          Length = 555

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+RK  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRKGPKGQQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVLEVSNLRKSYG-----DRVLIDG--------LSFSVP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVM-----LAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G  V+     LA+ D FR +  +   +W + +    +    
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGEIVLGETVKLASVDQFRDSMDNAKTVWEEVSGGQDIMRIG 418

Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|126658690|ref|ZP_01729835.1| Cobalamin synthesis protein/P47K [Cyanothece sp. CCY0110]
 gi|126619952|gb|EAZ90676.1| Cobalamin synthesis protein/P47K [Cyanothece sp. CCY0110]
          Length = 319

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 20/163 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKI-WAD---RTSA 167
           V +++G  G GKTT++ ++ +   D  + V++   + F    ID QL + + D     S 
Sbjct: 11  VTIIIGFLGSGKTTLLNQILQNDLDQKVAVLV---NEFGDINIDGQLLVSYEDDMVELSN 67

Query: 168 DFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             +C  I         EA K+  A+ +KVD LII+T G      I++  IG   R   RL
Sbjct: 68  GCICCTINDGLV----EAVKRILARKEKVDRLIIETTGVADPLPIILTFIGSDFRYFTRL 123

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEM-FHAVAGTTGLIMTKMD 267
           D     +V+ ++DA T        E+ F  +A    L++ K D
Sbjct: 124 D-----AVITLIDAETFTPEHFDSEVAFKQIAYGDILLLNKTD 161


>gi|300715207|ref|YP_003740010.1| ATP-binding component of a transport system [Erwinia billingiae
           Eb661]
 gi|299061043|emb|CAX58150.1| ATP-binding component of a transport system [Erwinia billingiae
           Eb661]
          Length = 555

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 43/232 (18%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K+VE   L K Y       R+L D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVVEVANLRKSYG-----DRLLIDD--------LSFSVP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVC 171
           G GK+T+   +S ++ +D+G  V+   GDT + A++DQ +        +W + +    + 
Sbjct: 359 GAGKSTLFRMMSGQEEADSGSIVL---GDTVKLASVDQFRDSMDNSKTVWEEVSGGQDIM 415

Query: 172 SEIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
               ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 416 RVGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|45357834|ref|NP_987391.1| putative ATP binding nickel incorporation protein [Methanococcus
           maripaludis S2]
 gi|45047394|emb|CAF29827.1| ATP binding putative nickel incorporation protein [Methanococcus
           maripaludis S2]
          Length = 232

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 27/163 (16%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKIWADRTSADF 169
           +I+V G  G GKT+V+    K++ + G K  +   D   +       +LKI      +  
Sbjct: 1   MIIVAGTPGAGKTSVMTHTIKQLLNKGNKPAVVKIDCLYTDDDTRYGKLKIPTLVGLSKD 60

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +C +    A     E  + A+ + VD LII+TAG  H                 R  P+ 
Sbjct: 61  MCPD--HFAIYNLEEMAEWAEKEGVDTLIIETAGLCH-----------------RCAPYT 101

Query: 230 PHSV-LQVLDATTGQNALRQVEMF----HAVAGTTGLIMTKMD 267
            +S+ + V+DAT+G N  R+V  F      VA T G I+++ +
Sbjct: 102 KNSLGICVIDATSGPNTPRKVGPFLTSADVVAITKGDIISQAE 144


>gi|261211115|ref|ZP_05925404.1| adenylylsulfate kinase [Vibrio sp. RC341]
 gi|260839616|gb|EEX66227.1| adenylylsulfate kinase [Vibrio sp. RC341]
          Length = 208

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             RP V+   G++G GK+TV G L  ++++ G    L  GD  R
Sbjct: 29  QQRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVR 72


>gi|126658708|ref|ZP_01729853.1| Cobalamin synthesis protein/P47K [Cyanothece sp. CCY0110]
 gi|126619970|gb|EAZ90694.1| Cobalamin synthesis protein/P47K [Cyanothece sp. CCY0110]
          Length = 327

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 15/132 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ-LKIWADRTSADF-- 169
           V ++ G  G GKTT++ ++ +      + V++   + F    ID+ L I  D    D   
Sbjct: 3   VTIITGFLGSGKTTLLNQILQNKDKLKIAVLV---NEFGDINIDEKLLISVDSDMIDLGN 59

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I        Y+  ++ +  KVD L+++T G      I++  +   ++ L RLD 
Sbjct: 60  GCICCTINDGFVNTVYQVLEREE--KVDYLVVETTGLADPLPIILTFLSTELKFLTRLD- 116

Query: 228 HAPHSVLQVLDA 239
               S++ V+DA
Sbjct: 117 ----SIITVVDA 124


>gi|119491202|ref|ZP_01623299.1| hypothetical protein L8106_25340 [Lyngbya sp. PCC 8106]
 gi|119453543|gb|EAW34704.1| hypothetical protein L8106_25340 [Lyngbya sp. PCC 8106]
          Length = 343

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 15/132 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADR----TSA 167
           V ++ G  G GKTT++ ++     D  + V++   + F    ID QL I  +      S 
Sbjct: 18  VTIITGFLGSGKTTLLNEILANKQDLKVAVLV---NEFGDINIDAQLLISTEEDMLELSN 74

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I        Y   ++ +  +VD ++I+T G      I++  +G  +R L RLD 
Sbjct: 75  GCICCTINEGLVDAVYRVLEREE--QVDYMVIETTGVADPLPIILTFLGTELRELTRLD- 131

Query: 228 HAPHSVLQVLDA 239
               S++ ++DA
Sbjct: 132 ----SIITLVDA 139


>gi|114569231|ref|YP_755911.1| GTP-binding signal recognition particle [Maricaulis maris MCS10]
 gi|114339693|gb|ABI64973.1| GTP-binding signal recognition particle SRP54, G- domain
           [Maricaulis maris MCS10]
          Length = 330

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 16/134 (11%)

Query: 41  LDDGVREELE-DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           ++ G+RE+ E D +IR+ +G   A     + L  R A D+S  + +  ++  I       
Sbjct: 70  IERGLREDNELDRVIRA-LGFHRAPGSAAQALI-RSAHDLSDGQAVARLAHAIES----- 122

Query: 100 SKPFNWDFSHRP----HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                + F   P    H +L  G  GVGKT+ + K + +   AG    L + D  R+ A 
Sbjct: 123 ----RYTFQPLPAVPEHAVLFAGTPGVGKTSALAKTAARAITAGAVPTLISCDGERAGAS 178

Query: 156 DQLKIWADRTSADF 169
           D+L+  A R  A F
Sbjct: 179 DRLQELARRMGAGF 192


>gi|222824208|ref|YP_002575782.1| DNA repair protein RadA [Campylobacter lari RM2100]
 gi|222539430|gb|ACM64531.1| DNA repair protein RadA [Campylobacter lari RM2100]
          Length = 446

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 55/101 (54%), Gaps = 14/101 (13%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD----FVCSE 173
           G  GVGK+T++ K++  ++ +G KV+  +G+  ++    Q+K+ A+R  A+    F+ +E
Sbjct: 96  GSPGVGKSTLLLKIASNLAKSGKKVLYVSGEESKA----QIKLRANRLDANDENLFLLTE 151

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           +  +      +   +   K  ++LIID+   +++N I  A 
Sbjct: 152 LCLE------DILNELSKKDYEILIIDSIQTIYSNKITSAA 186


>gi|330862601|emb|CBX72754.1| hypothetical protein YEW_HW34940 [Yersinia enterocolitica W22703]
          Length = 42

 Score = 38.1 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 18/23 (78%)

Query: 284 IPVYFLGVGEGINDLEPFVAKDF 306
           IP+ ++GVGEGI DL PF A DF
Sbjct: 11  IPIRYIGVGEGIEDLRPFKADDF 33


>gi|322805038|emb|CBZ02598.1| ABC transporter ATP-binding protein [Clostridium botulinum H04402
           065]
          Length = 517

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L
Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369


>gi|315221856|ref|ZP_07863768.1| ABC transporter, ATP-binding protein [Streptococcus anginosus
           F0211]
 gi|315189089|gb|EFU22792.1| ABC transporter, ATP-binding protein [Streptococcus anginosus
           F0211]
          Length = 513

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           R ++   EL      PL+KP N  F  R   + ++G NG+GKTT++  L
Sbjct: 322 RFIFQAEELQIGYDCPLTKPLNLTFE-RNQKVAIIGANGIGKTTLLKSL 369


>gi|312198201|ref|YP_004018262.1| sulfate adenylyltransferase large subunit [Frankia sp. EuI1c]
 gi|311229537|gb|ADP82392.1| sulfate adenylyltransferase, large subunit [Frankia sp. EuI1c]
          Length = 642

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 23/43 (53%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            RP VI   G++G GK+T+   + KK+ D G    L  GD  R
Sbjct: 461 QRPAVIWFTGLSGAGKSTIANLVEKKLHDEGFHTYLLDGDNVR 503


>gi|237794035|ref|YP_002861587.1| ABC transporter, ATP-binding protein [Clostridium botulinum Ba4
           str. 657]
 gi|229260521|gb|ACQ51554.1| ABC transporter, ATP-binding protein [Clostridium botulinum Ba4
           str. 657]
          Length = 517

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L
Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369


>gi|170760247|ref|YP_001786086.1| ABC transporter, ATP-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407236|gb|ACA55647.1| ABC transporter, ATP-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 517

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L
Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369


>gi|148378721|ref|YP_001253262.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934277|ref|YP_001383106.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935432|ref|YP_001386656.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str.
           Hall]
 gi|148288205|emb|CAL82274.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|152930321|gb|ABS35821.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931346|gb|ABS36845.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str.
           Hall]
          Length = 517

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L
Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369


>gi|168178113|ref|ZP_02612777.1| ABC transporter, ATP-binding protein [Clostridium botulinum NCTC
           2916]
 gi|182670590|gb|EDT82564.1| ABC transporter, ATP-binding protein [Clostridium botulinum NCTC
           2916]
          Length = 517

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L
Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369


>gi|319400709|gb|EFV88931.1| ABC transporter family protein [Staphylococcus epidermidis FRI909]
          Length = 644

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P N +     H I ++G NGVGKTT+I  +++K    G +++  A          Q
Sbjct: 343 PITQPINLEVFKGDH-IAIIGPNGVGKTTLIKTIAEKHPKLGGQIIFGANLQIGYYDQKQ 401

Query: 158 LKIWADRTSADFVCSE 173
            +  +++T  D+V  +
Sbjct: 402 AEFKSNKTILDYVWDQ 417


>gi|312199338|ref|YP_004019399.1| sulfate adenylyltransferase large subunit [Frankia sp. EuI1c]
 gi|311230674|gb|ADP83529.1| sulfate adenylyltransferase, large subunit [Frankia sp. EuI1c]
          Length = 644

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 23/43 (53%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            RP VI   G++G GK+T+   + KK+ D G    L  GD  R
Sbjct: 461 QRPAVIWFTGLSGAGKSTIANLVEKKLHDEGFHTYLLDGDNVR 503


>gi|157374409|ref|YP_001473009.1| putative ABC transporter ATP-binding protein [Shewanella sediminis
           HAW-EB3]
 gi|157316783|gb|ABV35881.1| ABC transporter-related protein [Shewanella sediminis HAW-EB3]
          Length = 555

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 90/224 (40%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S          ++ ++   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + LTK Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVIEVKNLTKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGAN 358

Query: 121 GVGKTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC--- 171
           G GK+T+   +S          + G  V LA+ + FR +  D+  +W + +    +    
Sbjct: 359 GAGKSTLFKMISGAEQPDSGSVEVGESVQLASVEQFRDSMNDKNTVWQEISEGQDIMRIN 418

Query: 172 -SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 419 NTEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462


>gi|153938210|ref|YP_001390081.1| ABC transporter, ATP-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|152934106|gb|ABS39604.1| ABC transporter, ATP-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|295318174|gb|ADF98551.1| ABC transporter, ATP-binding protein [Clostridium botulinum F str.
           230613]
          Length = 517

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L
Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369


>gi|58000330|ref|YP_190184.1| putative plasmid partitioning protein [Escherichia coli]
 gi|168758403|ref|ZP_02783410.1| ParA [Escherichia coli O157:H7 str. EC4401]
 gi|168770700|ref|ZP_02795707.1| ParA [Escherichia coli O157:H7 str. EC4486]
 gi|301646993|ref|ZP_07246829.1| partitioning protein, ParA-family protein [Escherichia coli MS
           146-1]
 gi|57903230|gb|AAW58860.1| putative plasmid partitioning protein [Escherichia coli]
 gi|189354767|gb|EDU73186.1| ParA [Escherichia coli O157:H7 str. EC4401]
 gi|189360440|gb|EDU78859.1| ParA [Escherichia coli O157:H7 str. EC4486]
 gi|301074838|gb|EFK89644.1| partitioning protein, ParA-family protein [Escherichia coli MS
           146-1]
          Length = 214

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 19/100 (19%)

Query: 113 VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +I VVG N  G GKTT+   L+  +++ G +V L  GD  R+AA    K  A+R +A  +
Sbjct: 1   MITVVGGNKGGSGKTTIASNLAIALANKGREVCLLNGDLQRTAA----KHHAEREAAGLL 56

Query: 171 CSEIGSDAAALAYEAFK------QAQAKKVDVLIIDTAGR 204
                   A    E F       QA  +K D +I+D AGR
Sbjct: 57  -------PAITLVEKFDNLTQTLQALNEKFDDVIVDVAGR 89


>gi|332290359|ref|YP_004421211.1| putative ABC transporter ATP-binding protein [Gallibacterium anatis
           UMN179]
 gi|330433255|gb|AEC18314.1| putative ABC transporter ATP-binding protein [Gallibacterium anatis
           UMN179]
          Length = 556

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 40/226 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S        ++ +S   D   R E  +L I    G  
Sbjct: 265 ARQKSIEKELEWVRQNPKGRQAKSKARMARFEELNNS---DYQKRNETNELFIPP--GPR 319

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E E L+K Y       R L D                N  FS  +  ++ ++G 
Sbjct: 320 LGDKVIEVENLSKSYG-----DRTLID----------------NLSFSIPKGAIVGIIGA 358

Query: 120 NGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           NG GK+T+   LS ++  D G       V+L++ + FR    +   +W +  S      +
Sbjct: 359 NGAGKSTLFKMLSGQEQPDKGTITLGDTVVLSSVEQFRDKMDNSKTVW-EEVSGGLDIMK 417

Query: 174 IGS-DAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           IG+ +  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 418 IGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRG 463


>gi|291526177|emb|CBK91764.1| DNA repair protein RadA [Eubacterium rectale DSM 17629]
          Length = 456

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 32/136 (23%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           R  ++LV G  G+GK+T++ ++ +++S   + ++  +G+     ++ Q+K+ ADR   DF
Sbjct: 90  RGSLVLVGGDPGIGKSTLLLQVCRELSQKKVPLLYVSGEE----SLHQIKMRADRL-GDF 144

Query: 170 VCSEIGSDAAALAYE-----AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                 +D+  L  E     A    Q KK +V++ID+   ++N  I              
Sbjct: 145 ------TDSLELLCETSLDIAKDVIQRKKPEVVVIDSIQTMYNEEI-------------- 184

Query: 225 LDPHAPHSVLQVLDAT 240
               AP SV QV + T
Sbjct: 185 --ASAPGSVSQVRETT 198


>gi|238755498|ref|ZP_04616837.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           ruckeri ATCC 29473]
 gi|238706254|gb|EEP98632.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           ruckeri ATCC 29473]
          Length = 548

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E L+K Y   V           LI  +   L K           ++ ++G N
Sbjct: 312 LGDKVLEVEHLSKSYGDRV-----------LIDDLTFALPKG---------AIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V LA+ D FR +  D   +W + +    +    
Sbjct: 352 GAGKSTLFRMLSGQEQPDSGSISLGDTVQLASVDQFRDSMDDSKTVWEEVSGGQDIMKIG 411

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             E+ S A    +      Q K+V  L     GR+H   +L  G G M+
Sbjct: 412 NFELPSRAYVGRFNFKGVDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459


>gi|163749770|ref|ZP_02157016.1| adenylylsulfate kinase [Shewanella benthica KT99]
 gi|161330583|gb|EDQ01541.1| adenylylsulfate kinase [Shewanella benthica KT99]
          Length = 234

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           HRP V+   G++G GK+T+   + K + D G K  L  GD  R
Sbjct: 55  HRPAVLWFTGLSGSGKSTLANAVDKMLHDIGCKTYLLDGDNVR 97


>gi|120554894|ref|YP_959245.1| GTP-binding signal recognition particle [Marinobacter aquaeolei
           VT8]
 gi|120324743|gb|ABM19058.1| GTP-binding signal recognition particle SRP54, G- domain
           [Marinobacter aquaeolei VT8]
          Length = 437

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 37/201 (18%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWA-------- 162
           +  +VG  G GKTT IGKL+ +  +      + L   D +R AA +QL ++         
Sbjct: 232 IYALVGPTGSGKTTTIGKLAARYVLEHGPDSLALVTTDRYRVAAHEQLFVFGRILNVPVR 291

Query: 163 ---DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
              +  S D +  E+ SD                  +++IDTAG    +      + ++ 
Sbjct: 292 VVDESHSLDDILDEL-SDR----------------HLVLIDTAGLTSADRGYQEQLAELA 334

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           R    +  H       V+ AT+    ++ V   + +A   G IMTK+D     G  +  V
Sbjct: 335 RSDHNIRTHL------VVSATSQPRIMKSVWHCYKMASLAGCIMTKIDEALTLGEALGFV 388

Query: 280 VTHKIPVYFLGVGEGI-NDLE 299
           +   +PV +   G+ I  DL+
Sbjct: 389 METSLPVAWYTDGQKIPEDLQ 409


>gi|291527090|emb|CBK92676.1| DNA repair protein RadA [Eubacterium rectale M104/1]
          Length = 456

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 32/136 (23%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           R  ++LV G  G+GK+T++ ++ +++S   + ++  +G+     ++ Q+K+ ADR   DF
Sbjct: 90  RGSLVLVGGDPGIGKSTLLLQVCRELSQKKVPLLYVSGEE----SLHQIKMRADRL-GDF 144

Query: 170 VCSEIGSDAAALAYE-----AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                 +D+  L  E     A    Q KK +V++ID+   ++N  I              
Sbjct: 145 ------TDSLELLCETSLDIAKDVIQRKKPEVVVIDSIQTMYNEEI-------------- 184

Query: 225 LDPHAPHSVLQVLDAT 240
               AP SV QV + T
Sbjct: 185 --ASAPGSVSQVRETT 198


>gi|170757680|ref|YP_001780362.1| ABC transporter, ATP-binding protein [Clostridium botulinum B1 str.
           Okra]
 gi|169122892|gb|ACA46728.1| ABC transporter, ATP-binding protein [Clostridium botulinum B1 str.
           Okra]
          Length = 517

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L
Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369


>gi|127512312|ref|YP_001093509.1| flagellar biosynthesis regulator FlhF [Shewanella loihica PV-4]
 gi|126637607|gb|ABO23250.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella loihica PV-4]
          Length = 474

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 27/217 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+  VG  GVGKTT + KL+ + +      +V L   D +R  A +QL  +         
Sbjct: 260 VVAFVGPTGVGKTTSVAKLAARFAAQHGSDQVALITTDHYRIGAYEQLATYGKIMGCPVK 319

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM-IRVLKRLDPHA 229
            +   ++   + Y      Q +   +++IDT           AG+G+  +R+ ++LD   
Sbjct: 320 QAHDLNELEQILY------QFRNRKLVLIDT-----------AGMGQRDVRLFQQLDNLT 362

Query: 230 PHSVLQ-----VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            +S L      VL +T+ +  L            +G I+TK+D +      + +++   +
Sbjct: 363 ANSRLPIRSYLVLSSTSQRRVLEDAVAQFTRIPLSGAILTKLDESVALAPALSVLIQSGL 422

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321
           P+ ++  G+ +   E     D  A+    L   E+K+
Sbjct: 423 PLSYVTDGQRVP--EDMQVADTLALANKALSVLEKKV 457


>gi|312196661|ref|YP_004016722.1| sulfate adenylyltransferase large subunit [Frankia sp. EuI1c]
 gi|311227997|gb|ADP80852.1| sulfate adenylyltransferase, large subunit [Frankia sp. EuI1c]
          Length = 642

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 23/43 (53%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            RP VI   G++G GK+T+   + KK+ D G    L  GD  R
Sbjct: 461 QRPAVIWFTGLSGAGKSTIANLVEKKLHDEGFHTYLLDGDNVR 503


>gi|262401847|ref|ZP_06078412.1| adenylylsulfate kinase [Vibrio sp. RC586]
 gi|262351819|gb|EEZ00950.1| adenylylsulfate kinase [Vibrio sp. RC586]
          Length = 208

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             RP V+   G++G GK+TV G L  ++++ G    L  GD  R
Sbjct: 29  QQRPAVLWFTGLSGAGKSTVAGTLENRLAELGYHTYLLDGDNVR 72


>gi|325273561|ref|ZP_08139789.1| flagellar biosynthesis regulator FlhF [Pseudomonas sp. TJI-51]
 gi|324101300|gb|EGB98918.1| flagellar biosynthesis regulator FlhF [Pseudomonas sp. TJI-51]
          Length = 129

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H +PV +L  G  I
Sbjct: 25  VLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHDLPVAYLTDGPRI 84

Query: 296 ND 297
            D
Sbjct: 85  PD 86


>gi|270263876|ref|ZP_06192144.1| transporter [Serratia odorifera 4Rx13]
 gi|270042069|gb|EFA15165.1| transporter [Serratia odorifera 4Rx13]
          Length = 555

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 40/226 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S          ++ S+       R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GAR 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K+VE          VS  R  Y    LI  +   + K           ++ ++G NG
Sbjct: 319 LGDKVVE----------VSNLRKSYGDRLLIDDLSFAVPKG---------AIVGIIGPNG 359

Query: 122 VGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVCS 172
            GK+T+   +S ++  D+G    +A GDT + A++DQ +        +W + +    +  
Sbjct: 360 AGKSTLFRMMSGQEQPDSG---SIALGDTVKLASVDQFRDSMDNAKTVWEEVSGGQDIMR 416

Query: 173 EIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
              ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 417 VGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|218440765|ref|YP_002379094.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 7424]
 gi|218173493|gb|ACK72226.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 7424]
          Length = 341

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 15/132 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWAD----RTSA 167
           V L+ G  G GKTT++  + +  ++  LKV +   + F    ID QL +  +      S 
Sbjct: 16  VTLITGFLGSGKTTLLNHILQ--NNQNLKVAVLVNE-FGDINIDSQLLVSYENGIVELSN 72

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I        Y   +Q    +VD L+I+T G      I++  +G  +R L RLD 
Sbjct: 73  GCICCTINDGLVEAVYRILEQE--DRVDYLVIETTGVADLLPIILTFVGSELRELTRLD- 129

Query: 228 HAPHSVLQVLDA 239
               S+L ++D+
Sbjct: 130 ----SILTLVDS 137


>gi|226947999|ref|YP_002803090.1| ABC transporter, ATP-binding protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|226843025|gb|ACO85691.1| ABC transporter, ATP-binding protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 517

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L
Sbjct: 321 ENIIFNASNLIIGYNKPLSKPLNLKMK-RGQKIAITGANGIGKTTLIKTL 369


>gi|323492589|ref|ZP_08097735.1| putative ABC transporter ATP-binding protein [Vibrio brasiliensis
           LMG 20546]
 gi|323313191|gb|EGA66309.1| putative ABC transporter ATP-binding protein [Vibrio brasiliensis
           LMG 20546]
          Length = 555

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 30/160 (18%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  S S        ++ S  R     R E  +L I    G  
Sbjct: 264 ARQKTIEKELEWVRQNPKGRQSKSKARMARFEELQSGDRQK---RNETNELFIPP--GER 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK +   V +  + +++                     +  ++ ++G N
Sbjct: 319 LGDKVIEVNNLTKSFDGRVLIDDLSFNIP--------------------KGAIVGIIGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           G GK+T+   LS  +  D+G   M   GDT + A++DQ +
Sbjct: 359 GAGKSTLFKMLSGTEQPDSGTIEM---GDTVKLASVDQFR 395


>gi|238924656|ref|YP_002938172.1| DNA repair protein RadA [Eubacterium rectale ATCC 33656]
 gi|238876331|gb|ACR76038.1| DNA repair protein RadA [Eubacterium rectale ATCC 33656]
          Length = 456

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 32/136 (23%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           R  ++LV G  G+GK+T++ ++ +++S   + ++  +G+     ++ Q+K+ ADR   DF
Sbjct: 90  RGSLVLVGGDPGIGKSTLLLQVCRELSQKKVPLLYVSGEE----SLHQIKMRADRL-GDF 144

Query: 170 VCSEIGSDAAALAYE-----AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                 +D+  L  E     A    Q KK +V++ID+   ++N  I              
Sbjct: 145 ------TDSLELLCETSLDIAKDVIQRKKPEVVVIDSIQTMYNEEI-------------- 184

Query: 225 LDPHAPHSVLQVLDAT 240
               AP SV QV + T
Sbjct: 185 --ASAPGSVSQVRETT 198


>gi|146342053|ref|YP_001207101.1| putative bifunctional sulfate adenylyltransferase/adenylyl-sulfate
           kinase CysN/CysC [Bradyrhizobium sp. ORS278]
 gi|146194859|emb|CAL78884.1| putative CysN/CysC bifunctional enzyme: Sulfate adenylyltransferase
           (SAT) subunit 1 (N-terminal); Adenylyl-sulfate kinase
           (APS kinase)(C-terminal) [Bradyrhizobium sp. ORS278]
          Length = 620

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           P V+   G++G GK+T+   L KK+  AG   ML  GD  R
Sbjct: 450 PAVVWFTGLSGAGKSTIANCLEKKLHTAGFHTMLLDGDNIR 490


>gi|298245528|ref|ZP_06969334.1| DNA replication factor Dna2 [Ktedonobacter racemifer DSM 44963]
 gi|297553009|gb|EFH86874.1| DNA replication factor Dna2 [Ktedonobacter racemifer DSM 44963]
          Length = 1067

 Score = 37.7 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +LV G  G GKT+VI ++ K+++  G +V+LAA   F + A+D + +  +R   D
Sbjct: 625 LLVHGPPGTGKTSVIAEIVKRLTQQGQRVLLAA---FTNQAVDNILLRLEREGFD 676


>gi|258622751|ref|ZP_05717769.1| adenylylsulfate kinase [Vibrio mimicus VM573]
 gi|258584939|gb|EEW09670.1| adenylylsulfate kinase [Vibrio mimicus VM573]
          Length = 220

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             RP V+   G++G GK+TV G L  ++++ G    L  GD  R
Sbjct: 41  EQRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVR 84


>gi|259907350|ref|YP_002647706.1| putative ABC transporter ATP-binding protein [Erwinia pyrifoliae
           Ep1/96]
 gi|224962972|emb|CAX54453.1| Putative ATP-binding component of a transport system [Erwinia
           pyrifoliae Ep1/96]
 gi|283477172|emb|CAY73079.1| putative ABC transport system, ATP-binding component [Erwinia
           pyrifoliae DSM 12163]
          Length = 555

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 40/226 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E          VS  R  Y    LI  +   + K           ++ ++G NG
Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDDLTFSVPKG---------AIVGIIGPNG 359

Query: 122 VGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVCS 172
            GK+T+   +S ++  D+G  V+   GDT + A++DQ +        +W + +    +  
Sbjct: 360 AGKSTLFRMMSGQEQPDSGSIVL---GDTVKLASVDQFRDTMDNSKTVWEEVSGGQDIMR 416

Query: 173 EIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
              ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 417 IGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|10955419|ref|NP_053131.1| hypothetical protein pB171_069 [Escherichia coli]
 gi|91206306|ref|YP_538660.1| hypothetical protein UTI89_P061 [Escherichia coli UTI89]
 gi|116006840|ref|YP_788023.1| plasmid partitioning protein [Escherichia coli]
 gi|190014956|ref|YP_001965468.1| Putative partitioning protein [Escherichia coli]
 gi|191174405|ref|ZP_03035909.1| plasmid stability protein ParA [Escherichia coli F11]
 gi|194430311|ref|ZP_03062804.1| ParA [Escherichia coli B171]
 gi|215276273|ref|YP_002332236.1| ParA-like protein, putative partitioning protein [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218511242|ref|YP_002415700.1| putative plasmid partitioning protein [Escherichia coli 55989]
 gi|218692930|ref|YP_002406042.1| hypothetical protein p1ECUMN_0152 [Escherichia coli UMN026]
 gi|256026285|ref|ZP_05440150.1| hypothetical protein E4_23141 [Escherichia sp. 4_1_40B]
 gi|256855304|ref|YP_003162548.1| hypothetical protein pEC14_55 [Escherichia coli]
 gi|293404647|ref|ZP_06648640.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|300897134|ref|ZP_07115591.1| partitioning protein, ParA-family protein [Escherichia coli MS
           198-1]
 gi|6009445|dbj|BAA84904.1| orf69 [Escherichia coli]
 gi|91075757|gb|ABE10637.1| hypothetical protein UTI89_P061 [Escherichia coli UTI89]
 gi|109389677|gb|ABG29596.1| Putative partitioning protein [Escherichia coli]
 gi|115500695|dbj|BAF33926.1| plasmid partitioning protein [Escherichia coli]
 gi|190905338|gb|EDV64973.1| plasmid stability protein ParA [Escherichia coli F11]
 gi|194411641|gb|EDX27970.1| ParA [Escherichia coli B171]
 gi|215267869|emb|CAS07539.1| ParA-like protein, putative partitioning protein [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218350093|emb|CAQ87512.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|218359343|emb|CAU95829.1| putative plasmid partitioning protein [Escherichia coli 55989]
 gi|256275516|gb|ACU68789.1| conserved hypothetical protein [Escherichia coli]
 gi|281181670|dbj|BAI57999.1| ParA protein [Escherichia coli SE15]
 gi|291428359|gb|EFF01385.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|300359076|gb|EFJ74946.1| partitioning protein, ParA-family protein [Escherichia coli MS
           198-1]
 gi|307629857|gb|ADN74160.1| hypothetical protein UM146_24431 [Escherichia coli UM146]
 gi|315290867|gb|EFU50236.1| partitioning protein, ParA-family protein [Escherichia coli MS
           153-1]
 gi|323954212|gb|EGB50000.1| hypothetical protein ERLG_04487 [Escherichia coli H263]
 gi|324005324|gb|EGB74543.1| partitioning protein, ParA-family protein [Escherichia coli MS
           57-2]
 gi|324015229|gb|EGB84448.1| partitioning protein, ParA-family protein [Escherichia coli MS
           60-1]
 gi|332084726|gb|EGI89913.1| plasmid partitioning protein [Shigella boydii 3594-74]
 gi|332084759|gb|EGI89944.1| plasmid partitioning protein [Shigella boydii 3594-74]
          Length = 214

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 19/100 (19%)

Query: 113 VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +I VVG N  G GKTT+   L+  +++ G +V L  GD  R+AA    K  A+R +A  +
Sbjct: 1   MITVVGGNKGGSGKTTIASNLAIALANKGREVCLLNGDLQRTAA----KHHAEREAAGLL 56

Query: 171 CSEIGSDAAALAYEAFK------QAQAKKVDVLIIDTAGR 204
                   A    E F       QA  +K D +I+D AGR
Sbjct: 57  -------PAITLVEKFDNLTQTLQALNEKFDDVIVDVAGR 89


>gi|323492295|ref|ZP_08097451.1| adenylylsulfate kinase [Vibrio brasiliensis LMG 20546]
 gi|323313459|gb|EGA66567.1| adenylylsulfate kinase [Vibrio brasiliensis LMG 20546]
          Length = 205

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           S +P V+   G++G GK+TV G L  +++++G    L  GD  R      L
Sbjct: 29  SQKPVVLWFTGLSGAGKSTVAGALETRLAESGYHTYLLDGDNVRHGLCSDL 79


>gi|223044463|ref|ZP_03614494.1| vga protein [Staphylococcus capitis SK14]
 gi|222442152|gb|EEE48266.1| vga protein [Staphylococcus capitis SK14]
          Length = 645

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P N +     H I V+G NGVGKTT+I  ++ K +  G ++   A          Q
Sbjct: 343 PITQPINIEVFKGDH-IAVIGPNGVGKTTLIKTIADKQNKLGGEITFGANLQIGYYDQKQ 401

Query: 158 LKIWADRTSADFVCSE 173
            +  +++T  D+V  +
Sbjct: 402 AEFKSNKTILDYVWDQ 417


>gi|67922236|ref|ZP_00515750.1| Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K
           [Crocosphaera watsonii WH 8501]
 gi|67855939|gb|EAM51184.1| Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K
           [Crocosphaera watsonii WH 8501]
          Length = 348

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 22/149 (14%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++ ++ +   +  + V++   + F    ID QL I  +    +   
Sbjct: 22  VTIITGFLGSGKTTLLNQILQNKDNLKIAVLV---NEFGDINIDEQLLISVESDMIELGN 78

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I        Y+  ++ +  K+D L+I+T G      I+M  +   +  L RLD 
Sbjct: 79  GCICCTINDSFINTVYQVLEREE--KIDYLVIETTGLADPFPIIMTFLSTELNFLTRLD- 135

Query: 228 HAPHSVLQVLDAT-------TGQNALRQV 249
               +++ V+DA            ALRQ+
Sbjct: 136 ----AIITVVDAAGFDAKHFDSDAALRQI 160


>gi|310765153|gb|ADP10103.1| putative ABC transporter ATP-binding protein [Erwinia sp. Ejp617]
          Length = 555

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 40/226 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTDYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E          VS  R  Y    LI  +   + K           ++ ++G NG
Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDDLTFSVPKG---------AIVGIIGPNG 359

Query: 122 VGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVCS 172
            GK+T+   +S ++  D+G  V+   GDT + A++DQ +        +W + +    +  
Sbjct: 360 AGKSTLFRMMSGQEQPDSGSIVL---GDTVKLASVDQFRDSMDNSKTVWEEVSGGQDIMR 416

Query: 173 EIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
              ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 417 IGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|262166581|ref|ZP_06034318.1| adenylylsulfate kinase [Vibrio mimicus VM223]
 gi|262026297|gb|EEY44965.1| adenylylsulfate kinase [Vibrio mimicus VM223]
          Length = 208

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             RP V+   G++G GK+TV G L  ++++ G    L  GD  R
Sbjct: 29  EQRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVR 72


>gi|114800519|ref|YP_759669.1| flagellar biosynthesis protein FlhF-like protein [Hyphomonas
           neptunium ATCC 15444]
 gi|114740693|gb|ABI78818.1| flagellar biosynthesis protein FlhF homolog [Hyphomonas neptunium
           ATCC 15444]
          Length = 315

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 14/179 (7%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL+VG  G G+T+   KL+++ S A  ++   A D   SA  +QL  + +R  A    +E
Sbjct: 115 ILLVGPPGAGRTSTAAKLTRRASVARTEITPLAADLDGSAGGEQLAAYLERERAQIRVAE 174

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              DA      A +    +     +ID           +A +G ++  + R +P      
Sbjct: 175 T-PDALFSELRALRNESRR----CVIDLPAINPFEGDDLASLGDLVAAI-RAEP------ 222

Query: 234 LQVLDATTGQNALRQ-VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
           + VL A    + L +    FH  AG    I+TK+D   R GG I  + +  I    L +
Sbjct: 223 VLVLSAEGHPDDLAESARAFHR-AGVRRAILTKLDVVRRRGGAIAALTSSGIAFSHLAI 280


>gi|289644823|ref|ZP_06476876.1| cell division protein FtsY [Frankia symbiont of Datisca glomerata]
 gi|289505379|gb|EFD26425.1| cell division protein FtsY [Frankia symbiont of Datisca glomerata]
          Length = 51

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +DGTA+GG +I +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 1   LDGTAKGGIVIAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVDALLG 47


>gi|238761918|ref|ZP_04622892.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           kristensenii ATCC 33638]
 gi|238700032|gb|EEP92775.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           kristensenii ATCC 33638]
          Length = 548

 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 43/232 (18%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E L+K Y   V           LI  +   L K           ++ ++G N
Sbjct: 312 LGDKVLEVEHLSKSYGDRV-----------LIDDLTFALPKG---------AIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVC 171
           G GK+T+   LS ++  D+G    ++ GDT + A++DQ +        +W + +    + 
Sbjct: 352 GAGKSTLFRMLSGQEQPDSG---TISLGDTVQLASVDQFRDNMDGSKTVWEEVSGGQDIM 408

Query: 172 S----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
                EI S A    +      Q K+V  L     GR+H   +L  G G M+
Sbjct: 409 KIGNFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459


>gi|262170504|ref|ZP_06038182.1| adenylylsulfate kinase [Vibrio mimicus MB-451]
 gi|261891580|gb|EEY37566.1| adenylylsulfate kinase [Vibrio mimicus MB-451]
          Length = 208

 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             RP V+   G++G GK+TV G L  ++++ G    L  GD  R      L
Sbjct: 29  EQRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVRHGLCSDL 79


>gi|317153076|ref|YP_004121124.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943327|gb|ADU62378.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 356

 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 24/247 (9%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVI-LV 116
           Q++  E L +    D ++ R+  ++ E   + ++ +       KPF    S  P VI   
Sbjct: 102 QRLALEYLEREDVDDRAMTRIFCELREDADRSIITVLESMVEVKPFQ--ASRWPGVIHAF 159

Query: 117 VGVNGVGKTTVIGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
            G  G GKT+ + +L+  +K S+   ++ LA  D  R      LK +A+ +   F     
Sbjct: 160 AGPGGAGKTSSLIRLALREKKSNPKARICLATADGGRGKGRLVLKHYAELSCLAFRELMT 219

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   L  EA       + D+++ID  G L  N+ L     +    L  L      S+ 
Sbjct: 220 RDDFMLLRREA------DQFDMILIDLPG-LPGNTTL-----EEFTALYGLSTCENLSIH 267

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VL+    Q    +    +       +I TK+D T   G L+ +     +P+  L  G  
Sbjct: 268 LVLNPYYSQTQFDRFMEKYKSEQLASVIWTKLDETCTFGALLNMAFASGLPISALSYGAD 327

Query: 295 I-NDLEP 300
           + N + P
Sbjct: 328 LKNSIAP 334


>gi|258625778|ref|ZP_05720657.1| adenylylsulfate kinase [Vibrio mimicus VM603]
 gi|258582016|gb|EEW06886.1| adenylylsulfate kinase [Vibrio mimicus VM603]
          Length = 220

 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             RP V+   G++G GK+TV G L  ++++ G    L  GD  R
Sbjct: 41  EQRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVR 84


>gi|50545697|ref|XP_500387.1| YALI0B01452p [Yarrowia lipolytica]
 gi|49646253|emb|CAG82604.1| YALI0B01452p [Yarrowia lipolytica]
          Length = 465

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 13/107 (12%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKK--------MSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           P  ILV G    GK+TV+  L K+        +++  L   +    TFR+   D  K  A
Sbjct: 36  PQSILVHGEPSTGKSTVLKHLLKQSSINHSIILAEQCLTTRILLQRTFRAVVEDSGKTLA 95

Query: 163 DRTSADFVCSEIGSDAAALAYEAFK-QAQAKKVDVLIIDTAGRLHNN 208
           D    + +C  + +  A L  E FK Q    K  V+++D   +LH N
Sbjct: 96  D--DFEIICENVTAFMALL--ERFKAQYDFTKPHVIVLDGLDKLHEN 138


>gi|121535285|ref|ZP_01667099.1| Rhodanese domain protein [Thermosinus carboxydivorans Nor1]
 gi|121306170|gb|EAX47098.1| Rhodanese domain protein [Thermosinus carboxydivorans Nor1]
          Length = 346

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           F  RP +I++ G  GVGKT ++GKL+KK       + L +    R +   Q+ +   +T+
Sbjct: 136 FELRPEIIVICGSTGVGKTALLGKLAKKQIPV---IDLESLANHRGSVFGQVGLGKPQTA 192

Query: 167 ADF 169
            +F
Sbjct: 193 QNF 195


>gi|291548415|emb|CBL21523.1| ATPase components of ABC transporters with duplicated ATPase
           domains [Ruminococcus sp. SR1/5]
          Length = 518

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++L++  +L+     PLSKP N+    R   I +VG NG+GKTT++  L
Sbjct: 323 KMLFETHDLVIGYDEPLSKPLNFTME-RGQKIALVGTNGIGKTTLLRSL 370


>gi|269103376|ref|ZP_06156073.1| putative ABC transporter ATP-binding protein [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163274|gb|EEZ41770.1| putative ABC transporter ATP-binding protein [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 529

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 36/222 (16%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           QK   + L W+R+  KG  + S        ++ S+   D   R E  +L I    G  + 
Sbjct: 240 QKTIEKELEWVRQNPKGRQAKSKARMARFEELQSN---DHQKRNETNELFIPP--GERLG 294

Query: 64  QKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            K++E + LTK +       RVL D         +  S P       +  ++ ++G NG 
Sbjct: 295 DKVIEVKNLTKSFG-----DRVLIDD--------LSFSMP-------KGAIVGIIGANGA 334

Query: 123 GKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWAD-RTSADFV---CS 172
           GK+T+   LS K+  D+G       V LA+ D FR +  D   ++ +    AD +     
Sbjct: 335 GKSTLFKMLSGKEQPDSGTIELGETVSLASVDQFRDSMNDNNTVYQEISEGADIIKINSF 394

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           EI + A    +        K++  L      R+H   +L AG
Sbjct: 395 EIPARAYVSRFNFKGSDHQKRIGDLSGGERNRVHLAKLLKAG 436


>gi|197303582|ref|ZP_03168620.1| hypothetical protein RUMLAC_02308 [Ruminococcus lactaris ATCC
           29176]
 gi|197297316|gb|EDY31878.1| hypothetical protein RUMLAC_02308 [Ruminococcus lactaris ATCC
           29176]
          Length = 518

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           ++L++  +L+     PLSKP N+    R   + +VG NG+GKTT++
Sbjct: 323 KMLFETKDLVTGYDEPLSKPLNFSME-RGQKVALVGTNGIGKTTLL 367


>gi|157147595|ref|YP_001454914.1| putative ABC transporter ATP-binding protein [Citrobacter koseri
           ATCC BAA-895]
 gi|157084800|gb|ABV14478.1| hypothetical protein CKO_03395 [Citrobacter koseri ATCC BAA-895]
          Length = 571

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 94/229 (41%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+ TKG  S          ++ S+       R E  +L I    G  
Sbjct: 280 ARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GPR 334

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K+VE          VS  R  Y    LI  +   + K           ++ ++G NG
Sbjct: 335 LGDKVVE----------VSNLRKSYGDRLLIDDLSFSVPKG---------AIVGIIGPNG 375

Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +IG
Sbjct: 376 AGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKIG 434

Query: 176 -SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 435 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 482


>gi|325675122|ref|ZP_08154808.1| sulfate adenylate transferase/adenylyl-sulfate kinase [Rhodococcus
           equi ATCC 33707]
 gi|325554083|gb|EGD23759.1| sulfate adenylate transferase/adenylyl-sulfate kinase [Rhodococcus
           equi ATCC 33707]
          Length = 633

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           HRP ++   G++G GK+T+  +L +++   G    L  GD  R
Sbjct: 458 HRPQIVWFTGLSGSGKSTIANELERRLYTLGCHTYLLDGDNVR 500


>gi|294678636|ref|YP_003579251.1| ABC transporter ATP-binding protein [Rhodobacter capsulatus SB
           1003]
 gi|294477456|gb|ADE86844.1| ABC transporter, ATP-binding protein [Rhodobacter capsulatus SB
           1003]
          Length = 551

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 98/228 (42%), Gaps = 44/228 (19%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QKV  + L WIR   K   + S K +    D ++    ++GV+E +    I    G  
Sbjct: 260 AKQKVMEKELEWIRAGAKARQAKS-KARIAAYDKMA----EEGVKERVGKAQIIIPNGPR 314

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVN 120
           +  K++E    K++  D               K+L+      N  FS  P  IL V+G N
Sbjct: 315 LGGKVIEVEGLKKHMGD---------------KLLIE-----NLSFSLPPGGILGVIGPN 354

Query: 121 GVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSA---- 167
           G GK+T+I  L   +  D G    +  GDT + A +DQ +        +W + +      
Sbjct: 355 GAGKSTLIKMLVGAEAPDEG---TITLGDTVKLAYVDQSRDALDANKNVWEEISGGAELI 411

Query: 168 DFVCSEIGSDAAALAYEAFKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           +   +++ S A   A+  FK A Q KKV +L      R+H   +L +G
Sbjct: 412 ELGDAQVNSRAYCGAFN-FKGADQQKKVGLLSGGERNRVHMAKLLKSG 458


>gi|312964750|ref|ZP_07778991.1| plasmid partitioning protein [Escherichia coli 2362-75]
 gi|312290599|gb|EFR18478.1| plasmid partitioning protein [Escherichia coli 2362-75]
          Length = 150

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 19/100 (19%)

Query: 113 VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +I VVG N  G GKTT+   L+  +++ G +V L  GD  R+AA    K  A+R +A  +
Sbjct: 1   MITVVGGNKGGSGKTTIASNLAIALANKGREVCLLNGDLQRTAA----KHHAEREAAGLL 56

Query: 171 CSEIGSDAAALAYEAFK------QAQAKKVDVLIIDTAGR 204
                   A    E F       QA  +K D +I+D AGR
Sbjct: 57  -------PAITLVEKFDNLTQTLQALNEKFDDVIVDVAGR 89


>gi|312137726|ref|YP_004005062.1| sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase cysnc
           [Rhodococcus equi 103S]
 gi|311887065|emb|CBH46374.1| sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase CysNC
           [Rhodococcus equi 103S]
          Length = 633

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           HRP ++   G++G GK+T+  +L +++   G    L  GD  R
Sbjct: 458 HRPQIVWFTGLSGSGKSTIANELERRLYTLGCHTYLLDGDNVR 500


>gi|251799674|ref|YP_003014405.1| DNA repair protein RadA [Paenibacillus sp. JDR-2]
 gi|247547300|gb|ACT04319.1| DNA repair protein RadA [Paenibacillus sp. JDR-2]
          Length = 455

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 30/132 (22%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR----TSAD 168
           +ILV G  G+GK+T++ + S  ++  GLKV+  +G+     ++ Q ++ ADR    T + 
Sbjct: 91  LILVGGDPGIGKSTLLLQTSHALASKGLKVLYISGEE----SVRQTRLRADRLGALTESL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           FV  E   +    A E+ +       D L+ID+   +++ ++                  
Sbjct: 147 FVLCETNMEQINDAIESVQP------DFLVIDSIQTVYDPNV----------------QS 184

Query: 229 APHSVLQVLDAT 240
           AP SV QV + T
Sbjct: 185 APGSVAQVRECT 196


>gi|170726043|ref|YP_001760069.1| adenylyl-sulfate kinase [Shewanella woodyi ATCC 51908]
 gi|169811390|gb|ACA85974.1| Adenylyl-sulfate kinase [Shewanella woodyi ATCC 51908]
          Length = 222

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           H+P V+   G++G GK+TV   + K + D G K  L  GD  R
Sbjct: 46  HKPAVLWFTGLSGSGKSTVANAVDKLLYDLGCKTYLLDGDNVR 88


>gi|320527021|ref|ZP_08028210.1| ABC transporter, ATP-binding protein [Solobacterium moorei F0204]
 gi|320132606|gb|EFW25147.1| ABC transporter, ATP-binding protein [Solobacterium moorei F0204]
          Length = 520

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           RV+++  +L+     PLSKP ++    +  VIL  G NG+GKTT++  L
Sbjct: 325 RVIFETKQLVIGYDTPLSKPLDFLVERKEKVILS-GANGIGKTTLLKSL 372


>gi|260772131|ref|ZP_05881048.1| adenylylsulfate kinase [Vibrio metschnikovii CIP 69.14]
 gi|260612998|gb|EEX38200.1| adenylylsulfate kinase [Vibrio metschnikovii CIP 69.14]
          Length = 205

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             RP V+   G++G GK+T+ G L +++++ G    L  GD  R
Sbjct: 29  QQRPAVLWFTGLSGAGKSTIAGALEQRLAELGYHTYLLDGDNVR 72


>gi|238758585|ref|ZP_04619761.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           aldovae ATCC 35236]
 gi|238703285|gb|EEP95826.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           aldovae ATCC 35236]
          Length = 548

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E L+K Y   +           LI  +   L K           ++ ++G N
Sbjct: 312 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V LA+ D FR    D   +W + +    +    
Sbjct: 352 GAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 411

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GR+H   +L  G G M+
Sbjct: 412 NFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459


>gi|164687582|ref|ZP_02211610.1| hypothetical protein CLOBAR_01223 [Clostridium bartlettii DSM
           16795]
 gi|164603356|gb|EDQ96821.1| hypothetical protein CLOBAR_01223 [Clostridium bartlettii DSM
           16795]
          Length = 516

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 18/103 (17%)

Query: 46  REELEDLLIRSDIGVAVA------QKIVE--ELL---------TKRYAKDVSVQRVLYDV 88
           R++LED + R+   VA        QKI++  E+L         T  +    +  R++++ 
Sbjct: 267 RKKLEDFVARNKARVATRGMANSRQKILDKMEILERPKEKLKPTFNFRNARAAARIIFET 326

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +L+     PL+KP N+    R   I + G+NG+GK+T++  L
Sbjct: 327 KDLVLGYNEPLTKPLNFQLE-RGQKIALKGMNGIGKSTLLRTL 368


>gi|167623136|ref|YP_001673430.1| putative ABC transporter ATP-binding protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167353158|gb|ABZ75771.1| ABC transporter related [Shewanella halifaxensis HAW-EB4]
          Length = 555

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S          ++ ++   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y   V +  + + V                     +  ++ ++G N
Sbjct: 319 LGDKVIEINNLTKSYGDRVLIDDLTFSVP--------------------KGAIVGIIGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC--- 171
           G GK+T+   +S  +  D+G       V +A+ + FR +  D+  +W + +    +    
Sbjct: 359 GAGKSTLFKMISGAEQPDSGTVELGESVQIASVEQFRDSMNDKNTVWQEISDGQDIMRIN 418

Query: 172 -SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 419 NTEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462


>gi|74317196|ref|YP_314936.1| flagellar biosynthetic protein FlhF [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056691|gb|AAZ97131.1| flagellar biosynthetic protein FlhF [Thiobacillus denitrificans
           ATCC 25259]
          Length = 375

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 18/184 (9%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +VG  G GKTT + KL+ +  +      V L A D +R  A  QL ++A+      V   
Sbjct: 159 LVGSTGSGKTTTLAKLAARAVEHHGSEGVALVAADPYRVGAHAQLAVYAELLG---VALH 215

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +  D   LA     +  A  +  ++IDTAG         A      R   RLD      +
Sbjct: 216 LAGDPDELA-NLLPRLSAHTL--VLIDTAG--------FAPSDPRSRAFDRLDAIGVQRL 264

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             V  A + Q A  +  M     G    I+TK+D T + G  +  ++ H++ + ++  G+
Sbjct: 265 AVV--AASQQGAAIEQAMARFGRGAKACILTKLDETPQLGAALDSLIRHRLALAYVTGGQ 322

Query: 294 GIND 297
            + +
Sbjct: 323 RVPE 326


>gi|166033418|ref|ZP_02236247.1| hypothetical protein DORFOR_03144 [Dorea formicigenerans ATCC
           27755]
 gi|166026603|gb|EDR45360.1| hypothetical protein DORFOR_03144 [Dorea formicigenerans ATCC
           27755]
          Length = 526

 Score = 37.4 bits (85), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           RY K  +  + L++  +L+     PLSKP N     R   I +VG NG+GKTT++
Sbjct: 324 RYGK--TPGKFLFETHDLVTGYDEPLSKPLNLSME-RGQKIALVGTNGIGKTTLL 375


>gi|238797534|ref|ZP_04641032.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           mollaretii ATCC 43969]
 gi|238718675|gb|EEQ10493.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           mollaretii ATCC 43969]
          Length = 548

 Score = 37.4 bits (85), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIQKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E L+K Y   +           LI  +   L K           ++ ++G N
Sbjct: 312 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V LA+ D FR    D   +W + +    +    
Sbjct: 352 GAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 411

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GR+H   +L  G G M+
Sbjct: 412 NFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459


>gi|300866452|ref|ZP_07111144.1| cobalamin synthesis protein, P47K [Oscillatoria sp. PCC 6506]
 gi|300335556|emb|CBN56304.1| cobalamin synthesis protein, P47K [Oscillatoria sp. PCC 6506]
          Length = 382

 Score = 37.4 bits (85), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 15/132 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++  +    +  GLK  +   + F    ID +L + +D    +   
Sbjct: 23  VTIITGFLGSGKTTLLNHI--LTNQEGLKTAVLVNE-FGEIGIDNELIVTSDDNMVELNN 79

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I  D     Y+  ++ +  K+D L+++T G      + +  +G  +R + RLD 
Sbjct: 80  GCICCTINEDLVNAVYKVLERPE--KLDYLVVETTGLADPLPVALTFLGTELRDMTRLD- 136

Query: 228 HAPHSVLQVLDA 239
               S++ V+DA
Sbjct: 137 ----SIVTVVDA 144


>gi|172038140|ref|YP_001804641.1| hypothetical protein cce_3227 [Cyanothece sp. ATCC 51142]
 gi|171699594|gb|ACB52575.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 359

 Score = 37.4 bits (85), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 16/170 (9%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSA 167
           H   V ++ G  G GKTT++  +       G+K  +   + F    ID +L +  D    
Sbjct: 19  HGLPVTIITGFLGSGKTTLLNHILTNQE--GIKTAVLVNE-FGEIGIDNELIVTTDDNMV 75

Query: 168 DF----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +     VC  I  D     Y+  ++ +  KVD LI++T G      + +  +G  +R + 
Sbjct: 76  ELNNGCVCCTINEDLVQAVYKVLERPE--KVDYLIVETTGLADPLPVALTFLGTELRDMT 133

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHA-VAGTTGLIMTKMDGTARG 272
           RLD     S++ ++D       L   E  H+ +A    +++ K D    G
Sbjct: 134 RLD-----SIVTMVDCANFSLDLFNSEAAHSQIAYGDIIVLNKTDLVDEG 178


>gi|119952760|ref|YP_950167.1| partitioning protein parA family [Arthrobacter aurescens TC1]
 gi|119951890|gb|ABM10799.1| putative partitioning protein, parA-family [Arthrobacter aurescens
           TC1]
          Length = 210

 Score = 37.4 bits (85), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 19/100 (19%)

Query: 113 VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA-DRTSAD- 168
           +I+VVG    GVGK+TV+  L+ +++  G +V +  GD  RS A      WA DR  A  
Sbjct: 1   MIIVVGSEKGGVGKSTVVTNLAVELAKRGRRVAVVDGDRQRSTA-----RWAVDREEAGH 55

Query: 169 ----FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               FV  ++GS      +E  ++   +  DV+++D AG+
Sbjct: 56  QPRIFVVEKLGS-----LHETLRELD-EGYDVVLVDVAGK 89


>gi|300690266|ref|YP_003751261.1| ATPase component of ABC transporter [Ralstonia solanacearum PSI07]
 gi|299077326|emb|CBJ49952.1| putative ATPase component of ABC transporter [Ralstonia
           solanacearum PSI07]
          Length = 555

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 44/228 (19%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S K +    D ++S+      R E +++ I   +G  
Sbjct: 264 ARQKALKKELEWVRQNPKGRQAKS-KARLARFDELNSQEYQK--RNETQEIFI--PVGER 318

Query: 62  VAQKIVEEL-LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119
           +  ++VE + ++K Y       R+L D                N +F+     I+ ++G 
Sbjct: 319 LGNEVVEFVNVSKGYG-----DRLLID----------------NLNFTIPAGAIVGIIGP 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           NG GK+T+   L+ K+  D G+  M   G T + A +DQ +   D +   F     G+D 
Sbjct: 358 NGAGKSTLFRMLTGKEQPDTGVIKM---GPTVKLAYVDQSRDALDGSKTVFEEISGGADI 414

Query: 179 AALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214
             +  YE   +A           Q K V  L     GRLH    L+AG
Sbjct: 415 LTVGRYETPSRAYIGRFNFKGGDQQKHVGTLSGGERGRLHLAKTLIAG 462


>gi|261823106|ref|YP_003261212.1| ABC transporter ATP-binding protein [Pectobacterium wasabiae
           WPP163]
 gi|261607119|gb|ACX89605.1| ABC transporter related protein [Pectobacterium wasabiae WPP163]
          Length = 555

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         +   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K+VE   L+K Y      +R L D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVVEVTNLSKSYG-----ERQLIDG--------LSFSVP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W + +    +    
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGAIELGETVKLASVDQFRDAMDNSKTVWEEVSGGQDIMRVG 418

Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
            ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|149177888|ref|ZP_01856486.1| hypothetical protein PM8797T_06095 [Planctomyces maris DSM 8797]
 gi|148843228|gb|EDL57593.1| hypothetical protein PM8797T_06095 [Planctomyces maris DSM 8797]
          Length = 368

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +H+   I+V G  G GKTT +G+L+K  SD GL V +   D
Sbjct: 2   AHQIKFIMVGGFLGAGKTTTLGRLAKYYSDQGLNVGVVTND 42


>gi|86147607|ref|ZP_01065917.1| adenylylsulfate kinase [Vibrio sp. MED222]
 gi|85834646|gb|EAQ52794.1| adenylylsulfate kinase [Vibrio sp. MED222]
          Length = 206

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 99  LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           + K F  D  S +P V+   G++G GK+TV G L  +++  G    L  GD  R      
Sbjct: 19  IDKTFRADLKSQKPAVLWFTGLSGSGKSTVAGALENRLAQLGYHTYLLDGDNVRHGLCSD 78

Query: 158 L 158
           L
Sbjct: 79  L 79


>gi|218710703|ref|YP_002418324.1| adenylylsulfate kinase [Vibrio splendidus LGP32]
 gi|218323722|emb|CAV20071.1| Adenylylsulfate kinase [Vibrio splendidus LGP32]
          Length = 206

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 99  LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           + K F  D  S +P V+   G++G GK+TV G L  +++  G    L  GD  R      
Sbjct: 19  IDKTFRADLKSQKPAVLWFTGLSGSGKSTVAGALENRLAQLGYHTYLLDGDNVRHGLCSD 78

Query: 158 L 158
           L
Sbjct: 79  L 79


>gi|329735442|gb|EGG71731.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis
           VCU028]
          Length = 644

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P++ P N +     H I ++G NGVGKTT+I  +++K +  G +++  A          Q
Sbjct: 343 PITLPINLEVFKGDH-IAIIGPNGVGKTTLIKTIAEKQNKLGGQIIFGANLQIGYYDQKQ 401

Query: 158 LKIWADRTSADFVCSE 173
            +  +++T  D+V  +
Sbjct: 402 AEFKSNKTILDYVWDQ 417


>gi|254508974|ref|ZP_05121080.1| adenylylsulfate kinase [Vibrio parahaemolyticus 16]
 gi|219548078|gb|EED25097.1| adenylylsulfate kinase [Vibrio parahaemolyticus 16]
          Length = 205

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             +P V+   G++G GK+TV G L  K+++ G    L  GD  R      L
Sbjct: 29  QQKPAVLWFTGLSGAGKSTVAGALENKLAELGYHTYLLDGDNVRHGLCSDL 79


>gi|16763372|ref|NP_458989.1| ABC transporter ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144850|ref|NP_808192.1| ABC transporter ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213051982|ref|ZP_03344860.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213427582|ref|ZP_03360332.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213650715|ref|ZP_03380768.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289825540|ref|ZP_06544741.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25384378|pir||AE1074 conserved hypothetical ABC transporter STY4928 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16505681|emb|CAD03412.1| conserved hypothetical ABC transporter [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140489|gb|AAO72052.1| conserved hypothetical ABC transporter [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 555

 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y   V +  + + V                     +  ++ ++G N
Sbjct: 319 LGDKVIEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           GVGK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 359 GVGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|220931234|ref|YP_002508142.1| hydrogenase accessory protein HypB [Halothermothrix orenii H 168]
 gi|219992544|gb|ACL69147.1| hydrogenase accessory protein HypB [Halothermothrix orenii H 168]
          Length = 215

 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VG  G GKTT++ K+ +K  D   K+++  GD + +   ++LK +  +       + +G
Sbjct: 35  LVGSPGAGKTTILEKIIEKF-DNTRKIVVIEGDLYTTRDAERLKKYEIQVVQ---INTMG 90

Query: 176 SD--AAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           +    A + ++A K+   +++D LII+  G L
Sbjct: 91  ACHLEAGMVWQALKEVNLEEIDFLIIENVGNL 122


>gi|294497176|ref|YP_003560876.1| putative efflux ABC transporter ATP-binding protein [Bacillus
           megaterium QM B1551]
 gi|294347113|gb|ADE67442.1| putative efflux ABC transporter, ATP-binding protein [Bacillus
           megaterium QM B1551]
          Length = 518

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +++++ S+L+     PLSKP N     R   I +VG NG+GKTT++
Sbjct: 323 KLIFETSDLVIGYEEPLSKPLNLKME-RGQKIALVGANGIGKTTLL 367


>gi|271502122|ref|YP_003335148.1| ABC transporter-like protein [Dickeya dadantii Ech586]
 gi|270345677|gb|ACZ78442.1| ABC transporter related protein [Dickeya dadantii Ech586]
          Length = 554

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 100/233 (42%), Gaps = 45/233 (19%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K +    D ++S  ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQNPKGRQAKG-KARLARFDELNS--VEYQKRNETSELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E + LTK Y       RVL D                N  F+  +  ++ ++G 
Sbjct: 319 LGDKVLEVQNLTKSYG-----DRVLID----------------NLSFAIPKGSIVGIIGP 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFV 170
           NG GK+T+   LS ++  D+G    ++ GDT + A++DQ +        +W + +    +
Sbjct: 358 NGAGKSTLFRMLSAQEQPDSG---SISLGDTVQLASVDQFRDKMDGSKTVWEEVSGGQDI 414

Query: 171 CS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
                 EI S A    +      Q K++  L     GR+H   +L  G G M+
Sbjct: 415 MRIGNFEIPSRAYVGRFNFKGVDQGKRIGELSGGERGRVHLAKLLQVG-GNML 466


>gi|170696258|ref|ZP_02887390.1| ABC transporter related [Burkholderia graminis C4D1M]
 gi|170138818|gb|EDT07014.1| ABC transporter related [Burkholderia graminis C4D1M]
          Length = 555

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 42/227 (18%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S   K  I         D   R E +++ I   +G  
Sbjct: 264 ARQKAIKKELEWVRQNPKGRQAKS---KARIARFEELNSQDYQKRNETQEIFI--PVGDR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  +++E + ++K Y   + +  V + V         P              ++ ++G N
Sbjct: 319 LGNEVIEFKNVSKSYGDRLLLDNVSFKV---------PAGA-----------IVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GK+T+   L+ ++  D+G  VM   G T + A +DQ +   D T   F     G+D  
Sbjct: 359 GAGKSTLFRMLTGREQPDSGEIVM---GPTVKLAYVDQSRDALDSTKTVFEEISGGADVL 415

Query: 180 ALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214
            +  YE   +A           Q K V  L     GRLH    L+AG
Sbjct: 416 TVGKYETPSRAYIGRFNFKGGDQQKTVGNLSGGERGRLHLAKTLIAG 462


>gi|293392951|ref|ZP_06637268.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Serratia odorifera DSM 4582]
 gi|291424485|gb|EFE97697.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Serratia odorifera DSM 4582]
          Length = 548

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 42/227 (18%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S          ++ S+       R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GAR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K+VE   L K Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 312 LGDKVVEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVC 171
           G GK+T+   +S ++  D+G  V+   GDT + A++DQ +        +W + +    + 
Sbjct: 352 GAGKSTLFRMMSGQEQPDSGSIVL---GDTVKLASVDQFRDSMDNGKTVWEEVSGGQDIM 408

Query: 172 SEIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
               ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 409 RIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455


>gi|188532826|ref|YP_001906623.1| putative ABC transporter ATP-binding protein [Erwinia tasmaniensis
           Et1/99]
 gi|188027868|emb|CAO95725.1| Putative ATP-binding component of a transport system [Erwinia
           tasmaniensis Et1/99]
          Length = 555

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 40/226 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSTDYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E          VS  R  Y    LI  +   + K           ++ ++G NG
Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDDLTFSVPKG---------AIVGIIGPNG 359

Query: 122 VGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVCS 172
            GK+T+   +S ++  D+G  V+   GDT + A++DQ +        +W + +    +  
Sbjct: 360 AGKSTLFRMMSGQEQPDSGSIVL---GDTVKLASVDQFRDSMDNSKTVWEEVSGGQDIMR 416

Query: 173 EIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
              ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 417 IGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|169351352|ref|ZP_02868290.1| hypothetical protein CLOSPI_02132 [Clostridium spiroforme DSM 1552]
 gi|169291574|gb|EDS73707.1| hypothetical protein CLOSPI_02132 [Clostridium spiroforme DSM 1552]
          Length = 517

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +VL++  +L+     PL+KP N  F  R   I + GVNG+GKTT++  L
Sbjct: 323 KVLFECKDLVIGYNSPLTKPMNIIFE-RNKKIAIKGVNGLGKTTLLKTL 370


>gi|32475116|ref|NP_868110.1| bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate
           kinase protein [Rhodopirellula baltica SH 1]
 gi|81660239|sp|Q7UMW2|CYSNC_RHOBA RecName: Full=Bifunctional enzyme CysN/CysC; Includes: RecName:
           Full=Sulfate adenylyltransferase subunit 1; AltName:
           Full=ATP-sulfurylase large subunit; AltName:
           Full=Sulfate adenylate transferase; Short=SAT; Includes:
           RecName: Full=Adenylyl-sulfate kinase; AltName: Full=APS
           kinase; AltName: Full=ATP adenosine-5'-phosphosulfate
           3'-phosphotransferase
 gi|32445656|emb|CAD75662.1| cysN/cysC bifunctionyal enzyme [Rhodopirellula baltica SH 1]
          Length = 647

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           F  +P  +L+ G+ G GKT++   + +K+ DAG  V +  G+  R      L   AD  S
Sbjct: 470 FGQKPATVLLTGLTGSGKTSIARAVERKLFDAGRSVAVVDGEFVRRGLSRDLGFSADDRS 529

Query: 167 ADF 169
            + 
Sbjct: 530 ENL 532


>gi|327539002|gb|EGF25637.1| bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate
           kinase protein [Rhodopirellula baltica WH47]
          Length = 647

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           F  +P  +L+ G+ G GKT++   + +K+ DAG  V +  G+  R      L   AD  S
Sbjct: 470 FGQKPATVLLTGLTGSGKTSIARAVERKLFDAGRSVAVVDGEFVRRGLSRDLGFSADDRS 529

Query: 167 ADF 169
            + 
Sbjct: 530 ENL 532


>gi|309775448|ref|ZP_07670451.1| ABC transporter, ATP-binding protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916837|gb|EFP62574.1| ABC transporter, ATP-binding protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 517

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  D +  RV++D  EL+     PL+KP   +      V  + GVNG+GKTT++  L
Sbjct: 315 FLSDRAPGRVIFDAQELVIGYDEPLTKPMRLELERNARVA-IKGVNGLGKTTLLKTL 370


>gi|238782713|ref|ZP_04626743.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           bercovieri ATCC 43970]
 gi|238716373|gb|EEQ08355.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           bercovieri ATCC 43970]
          Length = 548

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E L+K Y   +           LI  +   L K           ++ ++G N
Sbjct: 312 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V LA+ D FR    D   +W + +    +    
Sbjct: 352 GAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 411

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GR+H   +L  G G M+
Sbjct: 412 NFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459


>gi|326804276|ref|YP_004322094.1| DNA repair protein RadA [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650375|gb|AEA00558.1| DNA repair protein RadA [Aerococcus urinae ACS-120-V-Col10a]
          Length = 462

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 15/111 (13%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR---TSADFVC 171
           L+ G  G+GK+T++ +++K++SD G +V+  +G+     ++ Q+K+ ADR     ADF  
Sbjct: 95  LIGGDPGIGKSTLLLQVAKQLSDNGGRVLYVSGEE----SLHQIKMRADRLGYQDADFF- 149

Query: 172 SEIGSDAAALAYE-AFKQAQAKKVDVLIIDTAGRL-HNNSILMAGIGKMIR 220
             + ++   LA + A    QA   D ++ID+   + H N+  +AG    +R
Sbjct: 150 --VYAETDLLAIQAAISDTQA---DFVVIDSIQTMVHPNNESLAGSVSQVR 195


>gi|325285965|ref|YP_004261755.1| DNA repair protein RadA [Cellulophaga lytica DSM 7489]
 gi|324321419|gb|ADY28884.1| DNA repair protein RadA [Cellulophaga lytica DSM 7489]
          Length = 453

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 17/100 (17%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD----FV 170
           L+ G  G+GK+T++ ++S K+     K +  +G+  +     Q+K+ ADR + +    F+
Sbjct: 95  LLGGEPGIGKSTLLLQISLKLP---YKTLYVSGEESQK----QIKMRADRITTNNDTCFI 147

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
            +E  +         FKQ +A + D+L+ID+   LH++ I
Sbjct: 148 LTETKTQ------NIFKQVEAIEPDILVIDSIQTLHSDYI 181


>gi|148978552|ref|ZP_01815004.1| fused predicted transporter subunit of ABC superfamily: ATP-binding
           component [Vibrionales bacterium SWAT-3]
 gi|145962341|gb|EDK27622.1| fused predicted transporter subunit of ABC superfamily: ATP-binding
           component [Vibrionales bacterium SWAT-3]
          Length = 555

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 30/178 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S        ++ + +      R E  +L I    G  
Sbjct: 264 ARQKTIEKELEWVRQNPKGRQAKSKARMARFEELTTGQYQK---RNETNELFIPP--GER 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E + LTK Y       RVL D         +  S P       +  ++ +VG N
Sbjct: 319 LGDKVLEVKNLTKSYG-----DRVLIDD--------LSFSMP-------KGAIVGIVGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G GK+T+   LS  +  D+G    +  G+T + A++DQ +   D T   F     G+D
Sbjct: 359 GAGKSTLFKMLSGAEQPDSG---TVELGETVKLASVDQFRDSMDDTKTVFQEISEGAD 413


>gi|157368916|ref|YP_001476905.1| putative ABC transporter ATP-binding protein [Serratia
           proteamaculans 568]
 gi|157320680|gb|ABV39777.1| ABC transporter-related protein [Serratia proteamaculans 568]
          Length = 555

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 40/226 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S          ++ S+       R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GAR 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K+VE          VS  R  Y    LI  +   + K           ++ ++G NG
Sbjct: 319 LGDKVVE----------VSNLRKSYGDRVLIDDLTFAVPKG---------AIVGIIGPNG 359

Query: 122 VGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVCS 172
            GK+T+   +S ++  D+G  V+   GDT + A++DQ +        +W + +    +  
Sbjct: 360 AGKSTLFRMMSGQEQPDSGSIVL---GDTVKLASVDQFRDSMDNSKTVWEEVSGGQDIMR 416

Query: 173 EIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
              ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 417 IGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|158319160|ref|YP_001511667.1| ABC transporter related [Alkaliphilus oremlandii OhILAs]
 gi|158139359|gb|ABW17671.1| ABC transporter related [Alkaliphilus oremlandii OhILAs]
          Length = 518

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 18/172 (10%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           R++++  +L+     PLSKP N     R   I +VG NG+GKTT++  +  ++     +V
Sbjct: 323 RLIFETRDLVIGYDEPLSKPLNLRME-RGQKIALVGANGLGKTTLLRSILGEIKALSGEV 381

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA------KKVDV 196
            L  GDT  +    Q    A+  +      E+  D  +L+    + A A      K ++ 
Sbjct: 382 EL--GDTLYTGYFQQEIKEANYNTC---IEEVWHDFPSLSQYEVRAALAKCGLTTKHIES 436

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVL------KRLDPHAPHSVLQVLDATTG 242
            I+  +G  H    L   I K   VL        LD  A   + + L A  G
Sbjct: 437 KIVVLSGGEHAKVRLCKLINKETNVLVLDEPTNHLDVDAKEELKRALKAYKG 488


>gi|84387778|ref|ZP_00990793.1| adenylylsulfate kinase [Vibrio splendidus 12B01]
 gi|84377293|gb|EAP94161.1| adenylylsulfate kinase [Vibrio splendidus 12B01]
          Length = 206

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 99  LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           + K F  D  S +P V+   G++G GK+TV G L  +++  G    L  GD  R      
Sbjct: 19  IDKTFRSDLKSQKPAVLWFTGLSGSGKSTVAGALENRLAQLGYHTYLLDGDNVRHGLCSD 78

Query: 158 L 158
           L
Sbjct: 79  L 79


>gi|284052505|ref|ZP_06382715.1| cobalamin synthesis protein P47K [Arthrospira platensis str.
           Paraca]
          Length = 247

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 12/121 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA---DRTSADF 169
           V ++ G  G GKTT++  +       GLK  +   + F    ID   I A   D T  + 
Sbjct: 22  VTIITGFLGSGKTTLLNYILSNQQ--GLKTAVLVNE-FGEVGIDNELIVATDADNTMVEL 78

Query: 170 ----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               VC  I  D     Y+  ++ +  KVD ++++T G      + +  +G  +R + RL
Sbjct: 79  SNGCVCCTINEDLVNAVYKVLERPE--KVDYMVVETTGLADPLPVALTFLGTELRDMTRL 136

Query: 226 D 226
           D
Sbjct: 137 D 137


>gi|289208062|ref|YP_003460128.1| ABC transporter [Thioalkalivibrio sp. K90mix]
 gi|288943693|gb|ADC71392.1| ABC transporter related protein [Thioalkalivibrio sp. K90mix]
          Length = 555

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 89/221 (40%), Gaps = 36/221 (16%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K     L W+R   KG  + S    +   +I SS   D   R E +++ I    G  +  
Sbjct: 267 KAMESELEWVRSNPKGRGAKSKARLKRFEEIASS---DYQKRSETKEIYIPP--GPRLGD 321

Query: 65  KIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           K++E E L+K +       RVLY          +  S P       R  +I V+G NGVG
Sbjct: 322 KVLEVENLSKHFG-----DRVLY--------QGLSFSVP-------RGALIGVIGPNGVG 361

Query: 124 KTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           KTT+   ++ +        + G  V LA  D  R A  D+  +W + ++   +       
Sbjct: 362 KTTLFRMIAGQDQPDDGSIELGETVQLAYVDQSRDALQDEKTVWEEISNGQDIIQVGNFQ 421

Query: 178 AAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
             + AY     FK   Q K++  L      R+H   +L +G
Sbjct: 422 MPSRAYVGRFNFKGTDQQKRMKELSGGERNRVHLAKLLQSG 462


>gi|253690039|ref|YP_003019229.1| ABC transporter related [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756617|gb|ACT14693.1| ABC transporter related [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 555

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         +   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K+VE   L+K Y      +R L D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVVEVTNLSKSYG-----ERQLIDG--------LSFSVP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W + +    +    
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTIELGETVKLASVDQFRDAMDNSKTVWEEVSGGQDIMRIG 418

Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
            ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|159030631|emb|CAO88299.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 365

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 10/119 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++  +    +  GLK  +   + F    ID +L I +D +  +   
Sbjct: 21  VTIITGFLGSGKTTLLNHILS--NQQGLKTAVLVNE-FGEIGIDNELIISSDDSMVELNN 77

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             +C  I  D     Y+  ++ +  K+D L+++T G      + +  +G  +R + RLD
Sbjct: 78  GCICCTINEDLIQAVYKILERPE--KIDYLVVETTGLADPLPVALTFLGTELREMTRLD 134


>gi|109897971|ref|YP_661226.1| adenylylsulfate kinase [Pseudoalteromonas atlantica T6c]
 gi|109700252|gb|ABG40172.1| adenylylsulfate kinase [Pseudoalteromonas atlantica T6c]
          Length = 198

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            +P V+ + G++G GK+T+   L KK++D G    L  GD  R
Sbjct: 23  QKPCVVWLTGLSGSGKSTIANLLEKKLADNGKHTYLLDGDNVR 65


>gi|71907429|ref|YP_285016.1| putative ABC transporter ATP-binding protein [Dechloromonas
           aromatica RCB]
 gi|71847050|gb|AAZ46546.1| ABC transporter related protein [Dechloromonas aromatica RCB]
          Length = 554

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 45/242 (18%)

Query: 12  SWIRKLTKGFA-------STSLKLKEGITDIISSRRLD---DGVREELEDLLIRSDIGVA 61
            WI +L +G         S+ L+ KE   +   ++++D     +++ELE   +RS+    
Sbjct: 226 EWILELDRGHGIPYKGNYSSWLEQKEARLET-ENKQIDAHMKAMKQELE--WVRSNPKAR 282

Query: 62  VAQKI-----VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWD 106
            A+        EE+ ++ Y K    Q +   V E +   ++     +K F       N  
Sbjct: 283 QAKSKSRLARFEEMSSQEYQKRNETQEIFIPVGERLGDKVIEFNGVTKSFGDKLLMDNVS 342

Query: 107 FSHRPHVIL-VVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           F+     I+ ++G NG GK+T+   ++ ++  D+G  ++   G T + A +DQ +   D 
Sbjct: 343 FNIPAGAIVGIIGPNGAGKSTLFKMITGQQQPDSGEVII---GPTVKMAYVDQSRDCLDG 399

Query: 165 TSADFVCSEIGSD-----------AAALAYEAFKQA-QAKKVDVLIIDTAGRLHNNSILM 212
           T   F     GSD            A +    FK A Q K+V  L     GRLH    LM
Sbjct: 400 TKTVFEELAQGSDILQIGKFEMPSRAYIGRFNFKGADQGKQVGNLSGGERGRLHLAKTLM 459

Query: 213 AG 214
           AG
Sbjct: 460 AG 461


>gi|14521377|ref|NP_126853.1| adenylylsulfate kinase [Pyrococcus abyssi GE5]
 gi|7387598|sp|P56858|CYSC_PYRAB RecName: Full=Probable adenylyl-sulfate kinase; AltName: Full=APS
           kinase; AltName: Full=ATP adenosine-5'-phosphosulfate
           3'-phosphotransferase; AltName:
           Full=Adenosine-5'-phosphosulfate kinase
 gi|5458595|emb|CAB50083.1| cysC adenylylsulfate kinase (EC 2.7.1.25) APS kinase [Pyrococcus
           abyssi GE5]
          Length = 174

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           I + G +G GKTT+  KL+KK+ + G KV +  GDT R      L
Sbjct: 6   IWLTGPSGAGKTTLAVKLAKKLREMGYKVEILDGDTIRKTLYPNL 50


>gi|260779464|ref|ZP_05888354.1| adenylylsulfate kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604273|gb|EEX30577.1| adenylylsulfate kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 205

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             +P V+   G++G GK+TV G L  K+++ G    L  GD  R
Sbjct: 29  QQKPVVLWFTGLSGAGKSTVAGALENKLAEQGYHTYLLDGDNVR 72


>gi|213852193|ref|ZP_03381725.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 275

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 12/113 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTS 166
           ++ ++G NGVGK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S
Sbjct: 71  IVGIIGPNGVGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVS 129

Query: 167 ADFVCSEIG-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
                 +IG ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 130 GGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 182


>gi|153813767|ref|ZP_01966435.1| hypothetical protein RUMOBE_04201 [Ruminococcus obeum ATCC 29174]
 gi|149830140|gb|EDM85234.1| hypothetical protein RUMOBE_04201 [Ruminococcus obeum ATCC 29174]
          Length = 518

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           ++L++  +L+     PLSKP N+    R   I +VG NG+GKTT++
Sbjct: 323 KMLFETHDLVIGYDEPLSKPLNFTME-RGQKIALVGTNGIGKTTLL 367


>gi|212224855|ref|YP_002308091.1| cysC adenylylsulfate kinase [Thermococcus onnurineus NA1]
 gi|212009812|gb|ACJ17194.1| cysC adenylylsulfate kinase [Thermococcus onnurineus NA1]
          Length = 181

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           I + G +G GKTT+  KL+KK+ + G +V +  GDT R     +L
Sbjct: 13  IWLTGPSGAGKTTLAVKLAKKLREMGYRVEILDGDTIRKTLYPEL 57


>gi|307155312|ref|YP_003890696.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 7822]
 gi|306985540|gb|ADN17421.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 7822]
          Length = 373

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSA 167
           H   V ++ G  G GKTT++  +       GLK  +   + F    ID +L I  D    
Sbjct: 19  HGLPVTIITGFLGSGKTTLLNHILTNQQ--GLKTAVLVNE-FGEIGIDNELIISTDDNMV 75

Query: 168 DF----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +     +C  I  D     Y+  ++ +  KVD L+++T G      + +  +G  +R + 
Sbjct: 76  ELNNGCICCTINEDLVNAVYKVLERPE--KVDYLVVETTGLADPLPVALTFLGTELRDMT 133

Query: 224 RLD 226
           RLD
Sbjct: 134 RLD 136


>gi|332307039|ref|YP_004434890.1| adenylylsulfate kinase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174368|gb|AEE23622.1| adenylylsulfate kinase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 198

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            +P V+ + G++G GK+T+   L KK++D G    L  GD  R
Sbjct: 23  QKPCVVWLTGLSGSGKSTIANLLEKKLADNGKHTYLLDGDNVR 65


>gi|115522361|ref|YP_779272.1| sulfate adenylyltransferase, large subunit [Rhodopseudomonas
           palustris BisA53]
 gi|115516308|gb|ABJ04292.1| sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase
           [Rhodopseudomonas palustris BisA53]
          Length = 631

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            RP V+ + G++G GK+T+   + K++SD G    L  GD  R
Sbjct: 457 QRPCVLWLTGLSGAGKSTIANLVEKRLSDLGHHTYLLDGDNLR 499


>gi|323495542|ref|ZP_08100616.1| adenylylsulfate kinase [Vibrio sinaloensis DSM 21326]
 gi|323319423|gb|EGA72360.1| adenylylsulfate kinase [Vibrio sinaloensis DSM 21326]
          Length = 206

 Score = 37.0 bits (84), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 24/51 (47%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             +P V+   G++G GK+TV G L  K++  G    L  GD  R      L
Sbjct: 29  QQKPAVLWFTGLSGAGKSTVAGALENKLAQQGYHTYLLDGDNVRHGLCSDL 79


>gi|166365887|ref|YP_001658160.1| cobalamin synthesis protein cobW-like protein [Microcystis
           aeruginosa NIES-843]
 gi|166088260|dbj|BAG02968.1| cobalamin synthesis protein cobW homolog [Microcystis aeruginosa
           NIES-843]
          Length = 367

 Score = 37.0 bits (84), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 10/119 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++  +    +  GLK  +   + F    ID +L I +D +  +   
Sbjct: 21  VTIITGFLGSGKTTLLNHILS--NQQGLKTAVLVNE-FGEIGIDNELIISSDDSMVELNN 77

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             +C  I  D     Y+  ++ +  K+D L+++T G      + +  +G  +R + RLD
Sbjct: 78  GCICCTINEDLIQAVYKILERPE--KIDYLVVETTGLADPLPVALTFLGTELREMTRLD 134


>gi|158339981|ref|YP_001521151.1| cobalamin synthesis protein/P47K [Acaryochloris marina MBIC11017]
 gi|158310222|gb|ABW31837.1| cobalamin synthesis protein/P47K [Acaryochloris marina MBIC11017]
          Length = 367

 Score = 37.0 bits (84), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++  +     D  + V++   + F    ID QL    D+       
Sbjct: 25  VTIITGFLGSGKTTLLNHILNTSQDLKVAVLV---NEFGDIDIDSQLLTTIDQDMVQLTN 81

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I  D     Y   ++ +  K+D ++I+T G      I++  +G  +R L  LD 
Sbjct: 82  GCICCTINDDLVEAVYSVLEREE--KIDHMVIETTGVADPLPIILTFVGSQLRDLTTLD- 138

Query: 228 HAPHSVLQVLDATTGQNALRQVE 250
               SV+ ++D+ T      Q E
Sbjct: 139 ----SVITLVDSETFTPECFQSE 157


>gi|222833281|gb|EEE71758.1| predicted protein [Populus trichocarpa]
          Length = 356

 Score = 37.0 bits (84), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 24/177 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT   KL+ +  +     ++ L   D FR  A +QL+I+ D      V
Sbjct: 194 VLALIGPTGVGKTTTTAKLAARYVLRHGADRLALLTTDRFRIGAHEQLRIYGDILG---V 250

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 DAA L    F  +  K   ++IIDT G    +  L   I  +  V       AP
Sbjct: 251 PVHAVKDAADL---RFALSAMKDKHLVIIDTVGMSQRDRSLSDQIAMLAGV------QAP 301

Query: 231 HSVLQVLDATTGQNALRQVEMFHA--------VAGTTGLIMTKMDGTARGGGLIPIV 279
              + +L+     + L   E+ HA          G  G I++K+D     G ++ +V
Sbjct: 302 MQRVLLLNGAAHGDTLN--EVVHAYRHDAAGDAGGIDGCIISKLDEATHLGSVLDVV 356


>gi|119512535|ref|ZP_01631613.1| hypothetical protein N9414_10832 [Nodularia spumigena CCY9414]
 gi|119462796|gb|EAW43755.1| hypothetical protein N9414_10832 [Nodularia spumigena CCY9414]
          Length = 344

 Score = 37.0 bits (84), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRT----SA 167
           V L+ G  G GKTT++ ++ K   +  + V++   + F    ID QL +  D+     S 
Sbjct: 22  VTLITGFLGSGKTTLLNQILKNKENLKVAVLV---NEFGDINIDSQLLVSVDQDMMELSN 78

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             +C  I        Y   ++ +  ++D L+I+T G      I++  +G  +R L  LD
Sbjct: 79  GCICCTINDGLVDAVYRILEREE--RIDYLVIETTGVADPLPIILTFLGTELRDLTNLD 135


>gi|27364177|ref|NP_759705.1| adenylylsulfate kinase [Vibrio vulnificus CMCP6]
 gi|37678598|ref|NP_933207.1| adenylylsulfate kinase [Vibrio vulnificus YJ016]
 gi|320157563|ref|YP_004189942.1| adenylylsulfate kinase [Vibrio vulnificus MO6-24/O]
 gi|29336649|sp|Q8DE75|CYSC_VIBVU RecName: Full=Adenylyl-sulfate kinase; AltName: Full=APS kinase;
           AltName: Full=ATP adenosine-5'-phosphosulfate
           3'-phosphotransferase; AltName:
           Full=Adenosine-5'-phosphosulfate kinase
 gi|56748738|sp|Q7MPF0|CYSC_VIBVY RecName: Full=Adenylyl-sulfate kinase; AltName: Full=APS kinase;
           AltName: Full=ATP adenosine-5'-phosphosulfate
           3'-phosphotransferase; AltName:
           Full=Adenosine-5'-phosphosulfate kinase
 gi|27360295|gb|AAO09232.1| Adenylylsulfate kinase [Vibrio vulnificus CMCP6]
 gi|37197338|dbj|BAC93178.1| adenylylsulfate kinase [Vibrio vulnificus YJ016]
 gi|319932875|gb|ADV87739.1| adenylylsulfate kinase [Vibrio vulnificus MO6-24/O]
          Length = 207

 Score = 37.0 bits (84), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             +P V+   G++G GK+TV G L  ++++ G    L  GD  R
Sbjct: 29  QQKPAVLWFTGLSGAGKSTVAGALENRLAEQGFHTYLLDGDNVR 72


>gi|291086094|ref|ZP_06354796.2| ABC transporter, ATP-binding protein YjiK [Citrobacter youngae ATCC
           29220]
 gi|291069347|gb|EFE07456.1| ABC transporter, ATP-binding protein YjiK [Citrobacter youngae ATCC
           29220]
          Length = 548

 Score = 37.0 bits (84), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 94/230 (40%), Gaps = 39/230 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         +   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           ++ K+VE   L K Y   V +  + + V                     +  ++ ++G N
Sbjct: 312 LSDKVVEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 352 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 410

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 411 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459


>gi|213618532|ref|ZP_03372358.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 527

 Score = 37.0 bits (84), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 236 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 290

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 291 LGDKVIEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 330

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           GVGK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 331 GVGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 389

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 390 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 434


>gi|251809842|ref|ZP_04824315.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874499|ref|ZP_06283384.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis
           SK135]
 gi|251806615|gb|EES59272.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296638|gb|EFA89147.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis
           SK135]
          Length = 644

 Score = 37.0 bits (84), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P++ P N +     H I ++G NGVGKTT+I  +++K    G +++  A          Q
Sbjct: 343 PITLPINLEIFKGDH-IAIIGPNGVGKTTLIKTIAEKQHKLGGQIIFGANLQIGYYDQKQ 401

Query: 158 LKIWADRTSADFVCSE 173
            +  +++T  D+V  +
Sbjct: 402 AEFKSNKTILDYVWDQ 417


>gi|148977807|ref|ZP_01814363.1| adenylylsulfate kinase [Vibrionales bacterium SWAT-3]
 gi|145963021|gb|EDK28291.1| adenylylsulfate kinase [Vibrionales bacterium SWAT-3]
          Length = 206

 Score = 37.0 bits (84), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 99  LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           + K F  D  S +P V+   G++G GK+TV G L  +++  G    L  GD  R      
Sbjct: 19  IDKGFRADLKSQKPAVLWFTGLSGSGKSTVAGALENRLAQLGYHTYLLDGDNVRHGLCSD 78

Query: 158 L 158
           L
Sbjct: 79  L 79


>gi|116250555|ref|YP_766393.1| gluconokinase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255203|emb|CAK06277.1| putative gluconokinase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 178

 Score = 37.0 bits (84), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 53/191 (27%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA-----------IDQ 157
           +RPH I+V+GV+G GK++V  KL++      L +    GD    AA            D+
Sbjct: 6   NRPHAIIVMGVSGCGKSSVGEKLAE-----ALHLAFVEGDALHPAANVEKMSKGIPLTDE 60

Query: 158 LKI-WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
            ++ W DR   D   S   S    ++  A K                RL+ + +  A  G
Sbjct: 61  DRMPWLDRIGEDIKASLEKSKGIIVSCSALK----------------RLYRDRLRAAAGG 104

Query: 217 KMIRV---------LKRLDPHAPH--------SVLQVLDATTGQNALRQVEMFHAVAGTT 259
           K+  V         +KR+     H        S L  L+  TG+  +  V++   V G T
Sbjct: 105 KLFFVYLEGSRALLMKRMGERKGHFMPVSLLDSQLATLEVPTGEPGVVTVDIDDTVDGIT 164

Query: 260 GLIMTKMDGTA 270
               T ++G A
Sbjct: 165 A---TALEGLA 172


>gi|170725740|ref|YP_001759766.1| putative ABC transporter ATP-binding protein [Shewanella woodyi
           ATCC 51908]
 gi|169811087|gb|ACA85671.1| ABC transporter related [Shewanella woodyi ATCC 51908]
          Length = 554

 Score = 37.0 bits (84), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+ +KG  S   K K  +         D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGSKGRQS---KGKARMARFEELNTNDYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y   V +  + + V                     +  ++ ++G N
Sbjct: 319 LGDKVIEINNLTKSYGDRVLIDDLSFTVP--------------------KGAIVGIIGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC--- 171
           G GK+T+   +S  +  D+G       V +A+ + FR +  D+  +W + +    +    
Sbjct: 359 GAGKSTLFKMISGAEQPDSGTVELGESVQIASVEQFRDSMNDKNTVWQEISGGQDIMRIN 418

Query: 172 -SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 419 NTEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462


>gi|27468566|ref|NP_765203.1| vga protein [Staphylococcus epidermidis ATCC 12228]
 gi|293367725|ref|ZP_06614374.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27316113|gb|AAO05247.1|AE016749_193 vga protein [Staphylococcus epidermidis ATCC 12228]
 gi|291318064|gb|EFE58461.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736879|gb|EGG73143.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis
           VCU045]
          Length = 644

 Score = 37.0 bits (84), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P++ P N +     H I ++G NGVGKTT+I  +++K    G +++  A          Q
Sbjct: 343 PITLPINLEIFKGDH-IAIIGPNGVGKTTLIKTIAEKQHKLGGQIIFGANLQIGYYDQKQ 401

Query: 158 LKIWADRTSADFVCSE 173
            +  +++T  D+V  +
Sbjct: 402 AEFKSNKTILDYVWDQ 417


>gi|291571155|dbj|BAI93427.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 367

 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 12/121 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA---DRTSADF 169
           V ++ G  G GKTT++  +       GLK  +   + F    ID   I A   D T  + 
Sbjct: 22  VTIITGFLGSGKTTLLNYILSNQQ--GLKTAVLVNE-FGEVGIDNELIVATDADNTMVEL 78

Query: 170 ----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               VC  I  D     Y+  ++ +  KVD ++++T G      + +  +G  +R + RL
Sbjct: 79  SNGCVCCTINEDLVNAVYKVLERPE--KVDYMVVETTGLADPLPVALTFLGTELRDMTRL 136

Query: 226 D 226
           D
Sbjct: 137 D 137


>gi|218886159|ref|YP_002435480.1| ABC transporter ATP-binding protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757113|gb|ACL08012.1| ABC transporter related [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 560

 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 16/107 (14%)

Query: 113 VILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADF 169
           ++ ++G NG GKTT+   L+  +  DAG    L  GDT + A +DQ +  + A +T  + 
Sbjct: 356 IVGIIGPNGAGKTTLFKMLAGVETPDAG---ELKIGDTVQVAFVDQNRDSLEAGKTVYEV 412

Query: 170 VCS----------EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
           +            E+ + A    +    Q Q KKVDVL      R+H
Sbjct: 413 ISEGYETVKLGNREVNARAYCSRFNLMGQDQQKKVDVLSGGERNRVH 459


>gi|156935488|ref|YP_001439405.1| putative ABC transporter ATP-binding protein [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156533742|gb|ABU78568.1| hypothetical protein ESA_03347 [Cronobacter sakazakii ATCC BAA-894]
          Length = 548

 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 93/230 (40%), Gaps = 39/230 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         +   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K+VE   L K Y   V +  + + V                     +  ++ ++G N
Sbjct: 312 LGDKVVEVSHLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 352 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 410

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 411 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459


>gi|157960987|ref|YP_001501021.1| putative ABC transporter ATP-binding protein [Shewanella pealeana
           ATCC 700345]
 gi|157845987|gb|ABV86486.1| ABC transporter related [Shewanella pealeana ATCC 700345]
          Length = 555

 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S          ++ ++   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y   V +  + + V                     +  ++ ++G N
Sbjct: 319 LGDKVIEITNLTKSYGDRVLIDDLTFSVP--------------------KGAIVGIIGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC--- 171
           G GK+T+   +S  +  D+G       V +A+ + FR +  D+  +W + +    +    
Sbjct: 359 GAGKSTLFKMISGAEQPDSGTVELGESVQIASVEQFRDSMNDKNTVWQEISDGQDIMRIN 418

Query: 172 -SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 419 NTEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462


>gi|88859172|ref|ZP_01133813.1| putative ABC transporter, ATP-binding protein [Pseudoalteromonas
           tunicata D2]
 gi|88819398|gb|EAR29212.1| putative ABC transporter, ATP-binding protein [Pseudoalteromonas
           tunicata D2]
          Length = 554

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 91/232 (39%), Gaps = 41/232 (17%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
            + QK  S+ L W+R   KG  + S   K  +      ++ D   R E  +L I    G 
Sbjct: 263 QARQKSISQELEWVRSNPKGRQAKS---KARMAQFAELQQSDYQKRNETNELFIPP--GP 317

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +  K++E          VS  R  Y    LI  +   + K           ++ ++G N
Sbjct: 318 RLGDKVLE----------VSNLRKSYGNRLLIDNLSFAIPKG---------AIVGIIGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV--------- 170
           G GK+T+   LS ++ +D+G  V+   G+T + A ++Q +   +  +  F          
Sbjct: 359 GAGKSTLFRMLSGQEQADSGEIVL---GETVQLATVEQFRDNMNENNTVFNEVSDGLDML 415

Query: 171 ---CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
                EI S A    +      Q K V  L      RLH   +L AG G MI
Sbjct: 416 KIGNFEIPSRAYVSRFNFKGNDQQKFVKELSGGERNRLHLAKLLKAG-GNMI 466


>gi|226943426|ref|YP_002798499.1| bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate
           kinase protein [Azotobacter vinelandii DJ]
 gi|226718353|gb|ACO77524.1| Adenylylsulfate kinase/ Sulfate Adenylyltransferase subunit 1
           [Azotobacter vinelandii DJ]
          Length = 633

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           F  RP  IL  G++G GK+T+   L +K+ D G  V +  G   R
Sbjct: 461 FGQRPATILFTGLSGAGKSTLAYALERKLFDMGRAVYVLDGQNLR 505


>gi|329939125|ref|ZP_08288499.1| gluconokinase [Streptomyces griseoaurantiacus M045]
 gi|329302010|gb|EGG45903.1| gluconokinase [Streptomyces griseoaurantiacus M045]
          Length = 172

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           H PHV++V+GV+G GKTT+   L+ +     L V  A GD F   A
Sbjct: 2   HTPHVVVVMGVSGTGKTTIGPLLAAR-----LGVPYAEGDDFHPQA 42


>gi|302348006|ref|YP_003815644.1| Adenylate kinase [Acidilobus saccharovorans 345-15]
 gi|302328418|gb|ADL18613.1| Adenylate kinase [Acidilobus saccharovorans 345-15]
          Length = 209

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 41/126 (32%)

Query: 96  LMPLS----KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV-MLAAGDTF 150
           +MP S     PF         VI+V GV GVGKTTV+  L +K  + GL++ +L  GD  
Sbjct: 1   MMPASGVKRNPF--------KVIVVTGVPGVGKTTVLSLLQEKAKERGLRLRVLNFGDFM 52

Query: 151 RSAAI--------DQLKIWADRT-------SADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              A+        DQ++  + R        +A  +  E GSD              K+ D
Sbjct: 53  LDNAVRKGLIKNRDQIRYLSFREQLELQDIAASSIIEEAGSD-------------LKEGD 99

Query: 196 VLIIDT 201
            LI+DT
Sbjct: 100 YLIVDT 105


>gi|312197130|ref|YP_004017191.1| sulfate adenylyltransferase large subunit [Frankia sp. EuI1c]
 gi|311228466|gb|ADP81321.1| sulfate adenylyltransferase, large subunit [Frankia sp. EuI1c]
          Length = 637

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           HRP V+   G++G GK+T+  +  +++   G+  +L  GD  R
Sbjct: 459 HRPAVVWFTGLSGAGKSTIANRTEQRLHSLGVHTVLLDGDNVR 501


>gi|54307843|ref|YP_128863.1| putative ABC transporter ATP-binding protein [Photobacterium
           profundum SS9]
 gi|46912269|emb|CAG19061.1| putative ABC transporter, ATP-binding protein [Photobacterium
           profundum SS9]
          Length = 555

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  + S        ++ +S   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQNPKGRQAKSKARMARFEELNTS---DHQKRNETNELFIPP--GER 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K+++   LTK Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVIDVTNLTKSYG-----DRVLIDD--------LSFSMP-------KGAIVGIIGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDA-----GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   LS  +  D+     G  V LA+ D FR +  D   ++ + +    +    
Sbjct: 359 GAGKSTLFKMLSGAEQPDSGTIELGTTVSLASVDQFRDSMNDSNTVYQEISEGAEIIRIN 418

Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
             +  A AY +   F+ + Q K++  L      R+H   +L AG
Sbjct: 419 NYEVPARAYVSRFNFRGSDQQKRIGDLSGGERNRVHLAKLLKAG 462


>gi|86134687|ref|ZP_01053269.1| DNA repair protein RadA/Sms [Polaribacter sp. MED152]
 gi|85821550|gb|EAQ42697.1| DNA repair protein RadA/Sms [Polaribacter sp. MED152]
          Length = 453

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 17/102 (16%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V L+ G  G+GK+T++ +++  +S    KV+  +G+  +S    Q+K+ A+R  A     
Sbjct: 93  VTLLGGEPGIGKSTLLLQVALNISQ---KVLYVSGEESQS----QIKMRAERLEA----- 140

Query: 173 EIGSDAAALA----YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
            + S+   L      + FK  +  + +VL+ID+   LH NSI
Sbjct: 141 -VNSNCLILTETNTQQIFKNIEETEPEVLVIDSIQTLHTNSI 181


>gi|213583272|ref|ZP_03365098.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 431

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 199 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 253

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 254 LGDKVIEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 293

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           GVGK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 294 GVGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 352

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 353 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 397


>gi|85058378|ref|YP_454080.1| putative ABC transporter ATP-binding protein [Sodalis glossinidius
           str. 'morsitans']
 gi|84778898|dbj|BAE73675.1| putative ABC transporter ATP-binding component [Sodalis
           glossinidius str. 'morsitans']
          Length = 554

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 89/228 (39%), Gaps = 35/228 (15%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R   KG  S   K K  +        +D   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRSNAKGRQS---KGKARLARFEELNNVDYQKRNETSELFIPP--GPR 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E          VS  R  Y    LI  +   L K           ++ ++G NG
Sbjct: 319 LGDKVLE----------VSQLRKSYGDRLLIDDLSFSLPKG---------AIVGIIGPNG 359

Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS--- 172
            GK+T+   LS K+  D+G       V LA+ D FR +  +   +W + +    +     
Sbjct: 360 AGKSTLFRLLSGKEQPDSGSITLGDTVQLASVDQFRDSMDNSKTVWEEISGGQDIMRIGN 419

Query: 173 -EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            E+ S A    +      Q K++  L     GR+H   +L  G G M+
Sbjct: 420 FELPSRAYVGRFNFKGVDQGKRIGELSGGERGRVHLAKLLQVG-GNML 466


>gi|88861503|ref|ZP_01136122.1| Cell division transporter substrate-binding protein FtsY
           [Pseudoalteromonas tunicata D2]
 gi|88816498|gb|EAR26334.1| Cell division transporter substrate-binding protein FtsY
           [Pseudoalteromonas tunicata D2]
          Length = 388

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+  +L K    T   +  G  +I S +++DD + EELE  L+ +D+GV    K++  L 
Sbjct: 308 SFFSRLKKSLIKTKQSIGSGFINIFSGKKIDDELFEELETQLLTADLGVDTTLKLIARLT 367

Query: 72  TKRYAKDVSVQRVLYDV 88
                K +     LYD+
Sbjct: 368 EAADRKQLKDGDALYDL 384


>gi|116662278|ref|YP_829332.1| cobyrinic acid a,c-diamide synthase [Arthrobacter sp. FB24]
 gi|116613042|gb|ABK05751.1| plasmid segregation oscillating ATPase ParF [Arthrobacter sp. FB24]
          Length = 210

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 19/100 (19%)

Query: 113 VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA-DRTSAD- 168
           +I+VVG    GVGK+TV+  L+ +++  G ++ +  GD  RS A      WA DR  A  
Sbjct: 1   MIIVVGSEKGGVGKSTVVTNLAVELAKRGKRIAVVDGDRQRSTA-----RWAVDREEAGH 55

Query: 169 ----FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               FV  ++GS      +E  ++      DV+++D AG+
Sbjct: 56  EPRIFVVEKLGS-----LHETLRELDT-SYDVVLVDVAGK 89


>gi|113478002|ref|YP_724063.1| cobalamin synthesis protein, P47K [Trichodesmium erythraeum IMS101]
 gi|110169050|gb|ABG53590.1| cobalamin synthesis protein, P47K [Trichodesmium erythraeum IMS101]
          Length = 327

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 33/214 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT------S 166
           V ++ G  G GKTT+I ++ +   D  + V++   + F    ID  ++  D        S
Sbjct: 16  VTIITGFLGSGKTTLINQILQNKQDLKVAVLV---NEFGDLNIDT-QLLTDMNDNMIELS 71

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +C  I        Y+  +    KK+D LII+T G      I++  +   ++ L  LD
Sbjct: 72  NGCICCTINEGLVDAVYQVLESD--KKIDYLIIETTGVADPLPIILTFLSTDLKDLTHLD 129

Query: 227 PHAPHSVLQVLDATT-GQNALRQVEMFHAVAGTTGLIMTKMD--------------GTAR 271
                SVL ++D      +       F  +A    +I+ K+D               T R
Sbjct: 130 -----SVLTLVDCENFTPDHFDSEAAFKQIAYGDIIILNKIDLASQDKVDYLDSYIKTIR 184

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
            G  I       IP Y + +   I+ L+P+  +D
Sbjct: 185 SGARILRSEHSNIPSYLI-LDVNISRLQPYSLED 217


>gi|295702547|ref|YP_003595622.1| putative efflux ABC transporter ATP-binding protein [Bacillus
           megaterium DSM 319]
 gi|294800206|gb|ADF37272.1| putative efflux ABC transporter, ATP-binding protein [Bacillus
           megaterium DSM 319]
          Length = 518

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +++++ S+L+     PLSKP N     R   I +VG NG+GKTT++
Sbjct: 323 KLIFETSDLVIGYGEPLSKPLNLKME-RGQKIALVGANGIGKTTLL 367


>gi|88798982|ref|ZP_01114563.1| flagellar biosynthesis protein [Reinekea sp. MED297]
 gi|88778209|gb|EAR09403.1| flagellar biosynthesis protein [Reinekea sp. MED297]
          Length = 439

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 42/203 (20%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  + G  G GKTT I KL+           V + + D F+    + LK   D    DF 
Sbjct: 237 VFALTGPTGAGKTTTIAKLAAHAVKKQGAESVAVVSMDWFQVGGQEILKSVTDILGVDF- 295

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                       Y   +Q   +K       T  RL + S+++         LK  +    
Sbjct: 296 ------------YPLTEQDSLQK-------TLQRLSSKSLVLIDTSGSADALKHWNQQTS 336

Query: 231 HSVLQ-------VLDATTGQNALRQV------EMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +  L        VL AT   +A+ Q         FH      G++++K+D +A  GG + 
Sbjct: 337 NGALANRIQSLLVLPATMTPSAVSQFISQLRGPRFH------GVVLSKVDESASFGGALE 390

Query: 278 IVVTHKIPVYFLGVGEGI-NDLE 299
            V+ ++ P++++  G+ I  D+E
Sbjct: 391 PVLRNRWPLWYITTGQNIPQDIE 413


>gi|330447346|ref|ZP_08310995.1| putative ABC transporter, ATP-binding protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491537|dbj|GAA05492.1| putative ABC transporter, ATP-binding protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 555

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 30/158 (18%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           QK   + L W+R+  KG  + S        ++ S+   D   R E  +L I    G  + 
Sbjct: 266 QKTIEKELEWVRQNPKGRQAKSKARMARFEELQSN---DHQKRNETNELFIPP--GERLG 320

Query: 64  QKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            K++E   LTK +       RVL D         +  S P       +  ++ ++G NG 
Sbjct: 321 DKVIEVNNLTKSFG-----DRVLIDD--------LSFSIP-------KGAIVGIIGANGA 360

Query: 123 GKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           GK+T+   LS  +  DAG    +  GDT + A+++Q +
Sbjct: 361 GKSTLFKMLSGTEQPDAG---TIELGDTVKLASVEQFR 395


>gi|317046821|ref|YP_004114469.1| ABC transporter-like protein [Pantoea sp. At-9b]
 gi|316948438|gb|ADU67913.1| ABC transporter related protein [Pantoea sp. At-9b]
          Length = 555

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 88/223 (39%), Gaps = 34/223 (15%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         +   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E          V+  R  Y    LI  +   L K           ++ ++G NG
Sbjct: 319 LGDKVLE----------VANLRKSYGDRVLIDDLSFSLPKG---------AIVGIIGPNG 359

Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            GK+T+   +S ++  D+G       V LA+ D FR A  +   +W + +    +     
Sbjct: 360 AGKSTLFRMMSGQEQPDSGTIELGETVKLASVDQFRDAMDNSKTVWEEVSGGQDIMRIGN 419

Query: 176 SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 420 TEMPSRAYVGRFNFKGTDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|209523107|ref|ZP_03271663.1| cobalamin synthesis protein P47K [Arthrospira maxima CS-328]
 gi|209496258|gb|EDZ96557.1| cobalamin synthesis protein P47K [Arthrospira maxima CS-328]
          Length = 374

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 12/121 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA---DRTSADF 169
           V ++ G  G GKTT++  +       GLK  +   + F    ID   I A   D T  + 
Sbjct: 22  VTIITGFLGSGKTTLLNYILSNQQ--GLKTAVLVNE-FGEVGIDNELIVATDSDNTMVEL 78

Query: 170 ----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               VC  I  D     Y+  ++ +  KVD ++++T G      + +  +G  +R + RL
Sbjct: 79  SNGCVCCTINEDLVNAVYKVLERPE--KVDYIVVETTGLADPLPVALTFLGTELRDMTRL 136

Query: 226 D 226
           D
Sbjct: 137 D 137


>gi|299065538|emb|CBJ36709.1| putative ATPase component of ABC transporter [Ralstonia
           solanacearum CMR15]
          Length = 545

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 95/228 (41%), Gaps = 44/228 (19%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S K +    D +SS+      R E +++ I +  G  
Sbjct: 254 ARQKALKKELEWVRQNPKGRQAKS-KARLARFDELSSQEYQK--RNETQEIFIPA--GER 308

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119
           +  ++VE   +TK Y       R+L D                N  F+     I+ ++G 
Sbjct: 309 LGNEVVEFTNVTKGYG-----DRLLID----------------NLSFTIPAGAIVGIIGP 347

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           NG GK+T+   L+ K+  DAG    +  G T + A +DQ +   D +   F     G+D 
Sbjct: 348 NGAGKSTLFRMLTGKEQPDAG---TVKIGPTVKLAYVDQSRDALDGSKTVFEEISGGADI 404

Query: 179 AALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214
             +  YE   +A           Q K V  L     GRLH    L++G
Sbjct: 405 LTVGRYETPSRAYIGRFNFKGGDQQKHVGTLSGGERGRLHLAKTLISG 452


>gi|34498815|ref|NP_903030.1| putative ABC transporter ATP-binding protein [Chromobacterium
           violaceum ATCC 12472]
 gi|34332876|gb|AAQ61024.2| probable ABC transporter ATP-binding protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 555

 Score = 36.6 bits (83), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 42/227 (18%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S   K  I         +   R E +++ I       
Sbjct: 264 ARQKAMKQELEWVRQNPKGRQAKS---KARIARFEELSSFETQKRNETQEIFI------P 314

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVN 120
           VA+++  E++           R+L D                N  F   P  I+ ++G N
Sbjct: 315 VAERLGNEVIEFEGVSKGFGDRLLID----------------NLSFKAPPGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-- 177
           G GK+T+   ++ K+  D+G    +  G T + A ++Q +   D     F     G+D  
Sbjct: 359 GAGKSTLFKMIAGKEQPDSG---TVKIGQTVQMAFVEQSREGLDGDKTVFEDVAAGADIL 415

Query: 178 ---------AAALAYEAFKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
                     A L    FK A Q KKV +L     GRLH    L+ G
Sbjct: 416 TVGKFEMSSRAYLGRFNFKGADQQKKVGMLSGGERGRLHLAKTLLKG 462


>gi|329725981|gb|EGG62458.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis
           VCU144]
          Length = 644

 Score = 36.6 bits (83), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P++ P N +     H I ++G NGVGKTT+I  +++K    G +++  A          Q
Sbjct: 343 PITLPINLEVFKGDH-IAIIGPNGVGKTTLIKTIAEKQHKLGGQIIFGANLQIGYYDQKQ 401

Query: 158 LKIWADRTSADFVCSE 173
            +  +++T  D+V  +
Sbjct: 402 AEFKSNKTILDYVWDQ 417


>gi|320333006|ref|YP_004169717.1| plasmid partitioning protein [Deinococcus maricopensis DSM 21211]
 gi|319754295|gb|ADV66052.1| plasmid partitioning protein [Deinococcus maricopensis DSM 21211]
          Length = 221

 Score = 36.6 bits (83), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 36/142 (25%)

Query: 107 FSHRPHVILVVGV----NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            S++    L++G+     GVGKTT    ++  ++D GL+V+LA GD  R+A+      W 
Sbjct: 9   MSNKRSGPLIIGLASLKGGVGKTTSAVHIAAHLADRGLQVLLADGDRIRTAS-----AWG 63

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL----------- 211
                 F   ++GS AA L       A+A   D ++ID+ G   +  +L           
Sbjct: 64  RGGRLPF---KVGS-AAML-------ARAGDYDAVVIDSRGGPEDTELLDLAENSDQLIL 112

Query: 212 -----MAGIGKMIRVLKRLDPH 228
                ++G+  MI+ ++ LD H
Sbjct: 113 PTTPDLSGMDGMIQTIEVLDRH 134


>gi|220930936|ref|YP_002507844.1| DNA repair protein RadA [Halothermothrix orenii H 168]
 gi|219992246|gb|ACL68849.1| DNA repair protein RadA [Halothermothrix orenii H 168]
          Length = 451

 Score = 36.6 bits (83), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 14/93 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +IL+ G  G+GK+T++ ++++  S+   KV+  +G+   S    QLK+ A R  A     
Sbjct: 85  LILLGGAPGIGKSTLVLQMARHFSEKYGKVLYVSGEESAS----QLKMRAGRLGA----- 135

Query: 173 EIGSDAAALAYEAFKQ----AQAKKVDVLIIDT 201
            I  D   L+   F+Q     Q +K +++IID+
Sbjct: 136 -INEDLYVLSETNFQQIYGVIQNEKYELIIIDS 167


>gi|257093923|ref|YP_003167564.1| putative ABC transporter ATP-binding protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046447|gb|ACV35635.1| ABC transporter related [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 554

 Score = 36.6 bits (83), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 71/171 (41%), Gaps = 27/171 (15%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWDFSHRPHVIL-V 116
           EEL +  Y K    Q +   V E +   ++     SK F          F+  P  I+ +
Sbjct: 294 EELSSVEYQKRNETQEIFIPVGERLGSKVIEFRNVSKSFGDRLLIDKLSFNVPPGAIVGI 353

Query: 117 VGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +G NG GK+T+   L  ++  D+G    +  G T R A +DQ +   D +   F     G
Sbjct: 354 IGPNGAGKSTLFRMLIGQEQPDSG---EVEIGSTVRLAYVDQSRDCLDGSKTVFEEVSGG 410

Query: 176 SDAAALA-YEA----------FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           +D   +  YE           FK A Q K+V  L     GRLH    L+AG
Sbjct: 411 ADILTVGRYETPSRAYIGRFNFKGADQQKQVGQLSGGERGRLHMAKTLIAG 461


>gi|50122822|ref|YP_051989.1| putative ABC transporter ATP-binding protein [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613348|emb|CAG76799.1| putative ABC transporter ATP-binding protein [Pectobacterium
           atrosepticum SCRI1043]
          Length = 555

 Score = 36.6 bits (83), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S          ++ S+       R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GAR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K+VE   L+K Y      +R L D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVVEVTNLSKSYG-----ERQLIDG--------LSFSVP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S +        + G  V LA+ D FR A  +   +W + +    +    
Sbjct: 359 GAGKSTLFRMMSGQEQPDDGTIELGETVKLASVDQFRDAMDNSKTVWEEVSGGQDIMRVG 418

Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
            ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|291280184|ref|YP_003497019.1| DNA repair protein RadA [Deferribacter desulfuricans SSM1]
 gi|290754886|dbj|BAI81263.1| DNA repair protein RadA [Deferribacter desulfuricans SSM1]
          Length = 442

 Score = 36.6 bits (83), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G+GK+T++ ++S K+S  G +V+  +G+     ++ QLK+  DR + +    E+   A  
Sbjct: 95  GIGKSTIMLQISDKLSKHGKRVIYFSGE----ESLTQLKLRCDRLNIN--GDELFFSATN 148

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
              +       K+ DV+IID+   ++++ I  A
Sbjct: 149 NIEDVLDSLSDKRADVIIIDSIQTIYSSEISSA 181


>gi|227114281|ref|ZP_03827937.1| putative ABC transporter ATP-binding protein [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
 gi|227327999|ref|ZP_03832023.1| putative ABC transporter ATP-binding protein [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 555

 Score = 36.6 bits (83), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         +   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K+VE   L+K Y      +R L D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVVEVTNLSKSYG-----ERQLIDG--------LSFSVP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S +        + G  V LA+ D FR A  +   +W + +    +    
Sbjct: 359 GAGKSTLFRMMSGQEQPDGGSIELGETVKLASVDQFRDAMDNSKTVWEEVSGGQDIMRIG 418

Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
            ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|146310216|ref|YP_001175290.1| putative ABC transporter ATP-binding protein [Enterobacter sp. 638]
 gi|145317092|gb|ABP59239.1| ABC transporter related protein [Enterobacter sp. 638]
          Length = 555

 Score = 36.6 bits (83), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S          ++ SS       R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNSSEYQK---RNETNELFIPP--GAR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K+VE   L K Y       R+L D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVVEVNNLRKSYG-----DRLLIDD--------LSFSVP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR +  +   +W + +    +    
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVWEEVSGGQDIMRIG 418

Query: 175 GSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
            ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|325981883|ref|YP_004294285.1| flagellar biosynthetic protein FlhF [Nitrosomonas sp. AL212]
 gi|325531402|gb|ADZ26123.1| flagellar biosynthetic protein FlhF [Nitrosomonas sp. AL212]
          Length = 433

 Score = 36.6 bits (83), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 32/194 (16%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD------R 164
           +  ++G  GVGKTT   KL+ +  +     +V L   D++R    +QL+I+        R
Sbjct: 202 IYALIGPTGVGKTTTTAKLAARCVIRHGADRVALLTTDSYRIGGHEQLRIYGRLLGIPVR 261

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV--- 221
           T  D       ++   L     +        +++IDT G    + +L   I  +      
Sbjct: 262 TIKD-------TEDLQLTLSELRNKH-----MVLIDTVGMSQRDQMLAEQITMLSNCGTD 309

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +KR         + +L A +    L +V   +   G  G I+TK+D  A  G  +  V+ 
Sbjct: 310 IKR---------MLILSAASNGKTLDEVISAYHKNGIYGCIITKVDEAASLGVALDAVIR 360

Query: 282 HKIPVYFLGVGEGI 295
            K+ ++++  G+ +
Sbjct: 361 RKLVLHYVANGQKV 374


>gi|298292312|ref|YP_003694251.1| ABC transporter [Starkeya novella DSM 506]
 gi|296928823|gb|ADH89632.1| ABC transporter related protein [Starkeya novella DSM 506]
          Length = 551

 Score = 36.6 bits (83), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTS 166
           ++ V+G NG GKTT+   ++ ++  DAG       V L   D  R A  D+  +W + + 
Sbjct: 347 IVGVIGPNGAGKTTLFRMIAGQEKPDAGTITIGDSVKLGYVDQNRDALDDKKTVWEEISG 406

Query: 167 ADFVC----SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            + V      EI S A   A+      Q KKV +L      R+H   IL  G
Sbjct: 407 GNEVLYLGKREINSRAYCGAFNFKGGDQQKKVGMLSGGERNRVHLARILQQG 458


>gi|237729290|ref|ZP_04559771.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909019|gb|EEH94937.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 555

 Score = 36.6 bits (83), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 39/230 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         +   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K+VE   L K Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVVEVTNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S       I
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMRI 417

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|225026398|ref|ZP_03715590.1| hypothetical protein EUBHAL_00647 [Eubacterium hallii DSM 3353]
 gi|224956287|gb|EEG37496.1| hypothetical protein EUBHAL_00647 [Eubacterium hallii DSM 3353]
          Length = 518

 Score = 36.6 bits (83), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           RY +  +  ++L++  +L+     PLSKP ++ +  R   I ++G NG+GKTT++  L
Sbjct: 316 RYGR--TPGKMLFETKKLVIGYDEPLSKPLDF-YMERGQKIALIGTNGIGKTTLLKSL 370


>gi|238794809|ref|ZP_04638411.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           intermedia ATCC 29909]
 gi|238725889|gb|EEQ17441.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           intermedia ATCC 29909]
          Length = 548

 Score = 36.6 bits (83), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 43/232 (18%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E L+K Y   +           LI  +   L K           ++ ++G N
Sbjct: 312 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFVC 171
           G GK+T+   LS ++  D+G    ++ GDT + A++DQ +        +W + +    + 
Sbjct: 352 GAGKSTLFRMLSGQEQPDSG---TISLGDTVQLASVDQFRDNMDNSKTVWEEVSGGQDIM 408

Query: 172 S----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
                EI S A    +      Q K+V  L     GR+H   +L  G G M+
Sbjct: 409 KIGNFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 459


>gi|219847270|ref|YP_002461703.1| cobalamin synthesis protein P47K [Chloroflexus aggregans DSM 9485]
 gi|219541529|gb|ACL23267.1| cobalamin synthesis protein P47K [Chloroflexus aggregans DSM 9485]
          Length = 364

 Score = 36.6 bits (83), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 15/132 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++ ++ K  +D GL+V +   D F S  ID QL I  +  +     
Sbjct: 10  VTILTGFLGAGKTTLLNRILK--ADHGLRVAVLVND-FGSINIDAQLVIDVESETISLAN 66

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             VC  I  D    A+   ++ Q    + LII+ +G     +I    +   +R   RLD 
Sbjct: 67  GCVCCTIRDDLLQTAFTLLERPQPP--EYLIIEASGVSDPWAIADTFLLPELRTYFRLD- 123

Query: 228 HAPHSVLQVLDA 239
               SV+ V+DA
Sbjct: 124 ----SVITVIDA 131


>gi|325478424|gb|EGC81538.1| DNA repair protein RadA [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 455

 Score = 36.6 bits (83), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           R  V ++    G GK+T++ +LSK  +D GLKV+  +G+   S    Q+K  ADR   D 
Sbjct: 85  RDSVSILTARPGAGKSTLLLQLSKSYADLGLKVIYISGEESES----QIKSRADRIMNDS 140

Query: 170 VCSEI---GSDAAALAYEAFKQAQAKKVDVLIIDT 201
           +   +    +++  LA +  K+  A   D++ +D+
Sbjct: 141 LPENVWILSTNSMDLAIKEIKKIDA---DIVFLDS 172


>gi|260596409|ref|YP_003208980.1| putative ABC transporter ATP-binding protein [Cronobacter
           turicensis z3032]
 gi|260215586|emb|CBA27815.1| Uncharacterized ABC transporter ATP-binding protein yjjK
           [Cronobacter turicensis z3032]
          Length = 555

 Score = 36.6 bits (83), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 95/230 (41%), Gaps = 39/230 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         +   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K+VE   L K Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVVEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|212634184|ref|YP_002310709.1| putative ABC transporter ATP-binding protein [Shewanella
           piezotolerans WP3]
 gi|212555668|gb|ACJ28122.1| ABC transporter, ATP-binding protein [Shewanella piezotolerans WP3]
          Length = 555

 Score = 36.6 bits (83), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S          ++ ++   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVIEINNLTKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVC--- 171
           G GK+T+   +S  +  D+G       V +A+ + FR +  D+  +W + +    +    
Sbjct: 359 GAGKSTLFKMISGAEQPDSGSVELGESVQIASVEQFRDSMNDKNTVWQEISEGQDIMRIN 418

Query: 172 -SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 419 NTEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462


>gi|126660901|ref|ZP_01731992.1| hypothetical protein CY0110_21450 [Cyanothece sp. CCY0110]
 gi|126617798|gb|EAZ88576.1| hypothetical protein CY0110_21450 [Cyanothece sp. CCY0110]
          Length = 362

 Score = 36.6 bits (83), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 16/171 (9%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSA 167
           H   V ++ G  G GKTT++  +    +  G+K  +   + F    ID +L +  +    
Sbjct: 19  HGLPVTIITGFLGSGKTTLLNHIL--TNQEGIKTAVLVNE-FGEIGIDNELIVTTEDNMV 75

Query: 168 DF----VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +     VC  I  D     Y+  ++ +  KVD LI++T G      + +  +G  +R + 
Sbjct: 76  ELNNGCVCCTINEDLVQAVYKVLERPE--KVDYLIVETTGLADPLPVALTFLGTELRDMT 133

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHA-VAGTTGLIMTKMDGTARGG 273
           RLD     S++ ++D       L   E  H+ +A    +++ K D    G 
Sbjct: 134 RLD-----SIITMVDCANFSLDLFNSEAAHSQIAYGDIIVLNKTDLVDEGN 179


>gi|14601042|ref|NP_147568.1| hypothetical protein APE_0880 [Aeropyrum pernix K1]
 gi|5104547|dbj|BAA79862.1| hypothetical protein [Aeropyrum pernix K1]
          Length = 534

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWAD-----RT 165
           +VI+++G  G GKT V+  +       G      +GD F+ A A + +KI ++       
Sbjct: 52  NVIIILGGRGCGKTLVMRYIKHYFEPEGWDYKYFSGDQFKEADAQELMKIISETRDLLEN 111

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           S D+    +G D    A EA +     ++  L++D AGR+
Sbjct: 112 SEDYKVI-VGIDDVVEASEAIRDTIKNQLVPLVVDYAGRI 150


>gi|312130659|ref|YP_003997999.1| abc transporter related protein [Leadbetterella byssophila DSM
           17132]
 gi|311907205|gb|ADQ17646.1| ABC transporter related protein [Leadbetterella byssophila DSM
           17132]
          Length = 553

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 34/158 (21%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           QK     L W+R   KG  + S        ++++    D   REE  +L I    G  + 
Sbjct: 267 QKTLERELEWVRMSPKGRTAKSKARLNAYDNLLNQ---DAKEREEKLELYIPP--GPRLG 321

Query: 64  QKIVEELLTKRYAKDVSV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119
            K++E       AKD+ +    R+LY+                N +FS  P  I+ ++G 
Sbjct: 322 NKVIE-------AKDIKMGFGDRLLYE----------------NLNFSLPPAGIVGIIGP 358

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           NG GKTT+   ++ ++    L+     G+T + + +DQ
Sbjct: 359 NGAGKTTLFKLITGQLQP--LEGTFEVGETVQLSYVDQ 394


>gi|57867540|ref|YP_189223.1| ABC transporter ATP-binding protein [Staphylococcus epidermidis
           RP62A]
 gi|57638198|gb|AAW54986.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis
           RP62A]
          Length = 644

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P++ P N +     H I ++G NGVGKTT+I  +++K    G +++  A          Q
Sbjct: 343 PITLPINLEIFKGDH-IAIIGPNGVGKTTLIKTIAEKKHKLGGQIIFGANLQIGYYDQKQ 401

Query: 158 LKIWADRTSADFVCSE 173
            +  +++T  D+V  +
Sbjct: 402 AEFKSNKTILDYVWDQ 417


>gi|311693379|gb|ADP96252.1| ABC transporter ATP-binding protein-like protein [marine bacterium
           HP15]
          Length = 553

 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 45/228 (19%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S+QK   + L W+R   KG  S S K +    + +SS+      R E  +L I    G  
Sbjct: 264 SHQKAIKQELEWVRSNAKGRQSKS-KARLARFEEMSSQEFQK--RNETNELYIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVG 118
           +  K++E + ++K +       R+LY DVS                 FS  P  I+ ++G
Sbjct: 319 LGNKVIEVDGISKSFG-----DRMLYEDVS-----------------FSVPPGAIVGIIG 356

Query: 119 VNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLK-------IWADRTSADFV 170
            NG GK+T+   ++     D+G    +  G+T   A +DQ++       +W + +  + +
Sbjct: 357 GNGAGKSTLFKMIAGFDKPDSG---DITVGETVELAYVDQMRDLDGSKTVWEELSDGNDI 413

Query: 171 CSEIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
                 +  + AY     FK + Q K+V  L      RLH   +L  G
Sbjct: 414 IKVGNYETPSRAYVGRFNFKGSDQQKRVGDLSGGERNRLHLAKLLKQG 461


>gi|59710930|ref|YP_203706.1| adenylylsulfate kinase [Vibrio fischeri ES114]
 gi|59479031|gb|AAW84818.1| adenosine 5'-phosphosulfate kinase [Vibrio fischeri ES114]
          Length = 204

 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            +P V+   G++G GK+T+ G L  K+++ G    L  GD  R
Sbjct: 30  QKPAVLWFTGLSGAGKSTIAGALESKLAELGYHTYLLDGDNVR 72


>gi|300770602|ref|ZP_07080481.1| DNA repair protein RadA [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763078|gb|EFK59895.1| DNA repair protein RadA [Sphingobacterium spiritivorum ATCC 33861]
          Length = 461

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 33/133 (24%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  G+GK+T++ +L+  +S   +K +  +G+     +  Q+K+ A+R S      
Sbjct: 97  LVLIGGEPGIGKSTLMLQLA--LSIPQVKTLYISGEE----SEQQIKMRAERLSQSSKAN 150

Query: 169 -FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
            ++ +E  +         FKQ +A + DV++ID+   LH++ I                 
Sbjct: 151 CYILTETSTQ------NIFKQIEAVQPDVIVIDSIQTLHSSQI----------------E 188

Query: 228 HAPHSVLQVLDAT 240
            AP SV QV + T
Sbjct: 189 SAPGSVSQVRECT 201


>gi|160946559|ref|ZP_02093762.1| hypothetical protein PEPMIC_00517 [Parvimonas micra ATCC 33270]
 gi|158446943|gb|EDP23938.1| hypothetical protein PEPMIC_00517 [Parvimonas micra ATCC 33270]
          Length = 515

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           S  R++++  +L+     P+SKP N     R   I +VG NG+GKTT++ 
Sbjct: 319 STSRLIFETEDLVIGYDKPISKPLNLRME-RGDRIAIVGANGLGKTTLVN 367


>gi|91792499|ref|YP_562150.1| putative ABC transporter ATP-binding protein [Shewanella
           denitrificans OS217]
 gi|91714501|gb|ABE54427.1| ABC transporter related [Shewanella denitrificans OS217]
          Length = 555

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 36/224 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  ++ L W+R+  KG  S          ++ ++   D   R E  +L I    G  
Sbjct: 264 ARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTN---DYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVIEVTNLTKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   +S  +  D+G       V LA+ + FR +  D+  +W + +    +    
Sbjct: 359 GAGKSTLFRMISGDEQPDSGSISVGESVQLASVEQFRDSMNDKNTVWQEISGGQDIMRIN 418

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             EI S A    +      Q K +  L      R+H   +L AG
Sbjct: 419 NMEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAG 462


>gi|322834499|ref|YP_004214526.1| ABC transporter [Rahnella sp. Y9602]
 gi|321169700|gb|ADW75399.1| ABC transporter related protein [Rahnella sp. Y9602]
          Length = 586

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 92/231 (39%), Gaps = 41/231 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         +   R E  +L I    G  
Sbjct: 295 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GPR 349

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K+V+ + L+K Y   V +  + + V                     +  ++ ++G N
Sbjct: 350 LGDKVVDVKNLSKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 389

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFV-- 170
           G GK+T+   +S +    G  + L  GDT + A++DQ +        +W + +    +  
Sbjct: 390 GAGKSTLFRMMSGQEEANGGTIEL--GDTVKLASVDQFRDSMDNSKTVWEEVSGGQDIMR 447

Query: 171 --CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
              +E+ S A    +      Q K+V  L     GRLH   +L  G G M+
Sbjct: 448 IGTTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 497


>gi|159118657|ref|XP_001709547.1| ATP-binding protein [Giardia lamblia ATCC 50803]
 gi|157437664|gb|EDO81873.1| ATP-binding protein [Giardia lamblia ATCC 50803]
          Length = 369

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 22/28 (78%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           HRP V+LV+G+ G GKTT I +L+ +++
Sbjct: 24  HRPPVLLVIGMAGAGKTTFIQRLAAELN 51


>gi|329116697|ref|ZP_08245414.1| ABC transporter, ATP-binding protein [Streptococcus parauberis NCFD
           2020]
 gi|326907102|gb|EGE54016.1| ABC transporter, ATP-binding protein [Streptococcus parauberis NCFD
           2020]
          Length = 625

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 16/98 (16%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +LL ++ +K V  + V  D+S LIH            DF      + ++GVNG GKTT++
Sbjct: 3   DLLVEKLSKTVGDKTVFKDISFLIH------------DFDR----VGIIGVNGTGKTTLL 46

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
             LS+K+   G    +   + +  A + Q  ++ D+T+
Sbjct: 47  DVLSEKIGFDGDISPITKANGYNIAYLTQDPVFDDQTT 84


>gi|29833171|ref|NP_827805.1| gluconokinase [Streptomyces avermitilis MA-4680]
 gi|29610293|dbj|BAC74340.1| putative gluconokinase [Streptomyces avermitilis MA-4680]
          Length = 178

 Score = 36.2 bits (82), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           H PHV++V+GV G GKTT+   L+ +     L V  A GD F   A
Sbjct: 5   HTPHVVVVMGVAGTGKTTIGPLLAAR-----LGVPYAEGDDFHPPA 45


>gi|227539098|ref|ZP_03969147.1| DNA repair protein RadA [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241048|gb|EEI91063.1| DNA repair protein RadA [Sphingobacterium spiritivorum ATCC 33300]
          Length = 461

 Score = 36.2 bits (82), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 33/133 (24%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  G+GK+T++ +L+  +S   +K +  +G+     +  Q+K+ A+R S      
Sbjct: 97  LVLIGGEPGIGKSTLMLQLA--LSIPQVKTLYISGEE----SEQQIKMRAERLSQSSKAN 150

Query: 169 -FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
            ++ +E  +         FKQ +A + DV++ID+   LH++ I                 
Sbjct: 151 CYILTETSTQ------NIFKQIEAVQPDVIVIDSIQTLHSSQI----------------E 188

Query: 228 HAPHSVLQVLDAT 240
            AP SV QV + T
Sbjct: 189 SAPGSVSQVRECT 201


>gi|224502920|ref|ZP_03671227.1| arsenical pump-driving ATPase [Listeria monocytogenes FSL R2-561]
          Length = 574

 Score = 36.2 bits (82), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +I  +G  GVGKTTV  K++KK++  G KV LA  D
Sbjct: 327 IIFTMGKGGVGKTTVAIKIAKKLAQEGKKVHLATTD 362


>gi|21220175|ref|NP_625954.1| gluconokinase [Streptomyces coelicolor A3(2)]
 gi|256788713|ref|ZP_05527144.1| gluconokinase [Streptomyces lividans TK24]
 gi|289772607|ref|ZP_06531985.1| shikimate kinase [Streptomyces lividans TK24]
 gi|13620205|emb|CAC36382.1| putative gluconokinase [Streptomyces coelicolor A3(2)]
 gi|289702806|gb|EFD70235.1| shikimate kinase [Streptomyces lividans TK24]
          Length = 175

 Score = 36.2 bits (82), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           H PHV++V+GV G GKTT+   L+ +     L V  A GD F   A
Sbjct: 5   HTPHVVVVMGVAGTGKTTIGPLLAAR-----LGVPYAEGDDFHPPA 45


>gi|288937255|ref|YP_003441314.1| ABC transporter [Klebsiella variicola At-22]
 gi|288891964|gb|ADC60282.1| ABC transporter related protein [Klebsiella variicola At-22]
          Length = 555

 Score = 36.2 bits (82), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNVEYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVLEVSHLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|108810482|ref|YP_646249.1| ATPase [Yersinia pestis Nepal516]
 gi|229840330|ref|ZP_04460489.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842410|ref|ZP_04462565.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900670|ref|ZP_04515794.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis Nepal516]
 gi|108774130|gb|ABG16649.1| ATPase [Yersinia pestis Nepal516]
 gi|229682009|gb|EEO78101.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis Nepal516]
 gi|229690720|gb|EEO82774.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696696|gb|EEO86743.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|320016991|gb|ADW00563.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 381

 Score = 36.2 bits (82), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 90  ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 144

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E L+K Y   +           LI  +   L K           ++ ++G N
Sbjct: 145 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 184

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V LA+ D FR    D   +W + +    +    
Sbjct: 185 GAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 244

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             E+ S A    +      Q K++  L     GR+H   +L  G G M+
Sbjct: 245 NFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVG-GNML 292


>gi|47459449|ref|YP_016311.1| putative ATPase/GTPase [Mycoplasma mobile 163K]
 gi|47458779|gb|AAT28100.1| putative ATPase/GTPase [Mycoplasma mobile 163K]
          Length = 632

 Score = 36.2 bits (82), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 22/116 (18%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM---SDAGLKVMLAAGDTFRS 152
              L + F   F  + HV+ + G  G GKT +  KL   +    +  +K+ML  G  FR+
Sbjct: 243 FYSLKETFLKSFETKKHVVFISGAAGSGKTVIAFKLLGYIMSNHNKSVKLML-PGPEFRA 301

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           AA  QLK   +    +F+    G+D  A            K DV+IID A +  +N
Sbjct: 302 AAKSQLK---NNNLVEFIG---GADMHA------------KHDVVIIDEAHKARSN 339


>gi|260775134|ref|ZP_05884032.1| ABC transporter ATP-binding protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608835|gb|EEX34997.1| ABC transporter ATP-binding protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 555

 Score = 36.2 bits (82), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 30/178 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK   + L W+R+  KG  + S        ++ S    D   R E  +L I    G  
Sbjct: 264 ARQKTIEKELEWVRQNPKGRQAKSKARMARFEELQSG---DHQKRNETNELFIPP--GER 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   LTK +       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVIEVNNLTKSFDG-----RVLIDD--------LSFSMP-------KGAIVGIIGAN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G GK+T+   LS  +  D+G    +  GDT + A++DQ +   D +   F     G+D
Sbjct: 359 GAGKSTLFKMLSGTEQPDSG---SIDMGDTVKLASVDQFRDSMDDSKTVFQEISEGAD 413


>gi|159044740|ref|YP_001533534.1| putative ABC transporter ATP-binding protein [Dinoroseobacter
           shibae DFL 12]
 gi|157912500|gb|ABV93933.1| hypothetical protein Dshi_2197 [Dinoroseobacter shibae DFL 12]
          Length = 551

 Score = 36.2 bits (82), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 44/228 (19%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + QK  +  L WIR   K   +          ++          RE++    I    G  
Sbjct: 260 AKQKTLARELEWIRAGAKARQAKQKARINAYEELAGQSE-----REKVGKAQIIIPNGPR 314

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119
           +  K++E E LTK Y   + ++                     N  FS  P  I+ V+G 
Sbjct: 315 LGSKVIEVENLTKAYGDKLLIE---------------------NLSFSLPPGGIVGVIGP 353

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFV 170
           NG GK+T+   L+ ++  D G    L+ GDT + A +DQ +        +W + +    +
Sbjct: 354 NGAGKSTLFRMLTGQEQPDGG---TLSYGDTVQLAYVDQSRDTLDPAATVWEEISGGGEI 410

Query: 171 C----SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
                ++I S A   A+      Q KKV +L      R+H   +L +G
Sbjct: 411 IELGDAQINSRAYCGAFNFKGGDQQKKVGLLSGGERNRVHMAKLLKSG 458


>gi|197334231|ref|YP_002155081.1| adenylylsulfate kinase [Vibrio fischeri MJ11]
 gi|197315721|gb|ACH65168.1| adenylylsulfate kinase [Vibrio fischeri MJ11]
          Length = 204

 Score = 36.2 bits (82), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            +P V+   G++G GK+T+ G L  K+++ G    L  GD  R
Sbjct: 30  QKPAVLWFTGLSGAGKSTIAGALESKLAELGYHTYLLDGDNVR 72


>gi|206578916|ref|YP_002240559.1| ABC transporter, ATP-binding protein [Klebsiella pneumoniae 342]
 gi|290512659|ref|ZP_06552025.1| ABC transporter ATP-binding protein yjjK [Klebsiella sp. 1_1_55]
 gi|206567974|gb|ACI09750.1| ABC transporter, ATP-binding protein [Klebsiella pneumoniae 342]
 gi|289775000|gb|EFD83002.1| ABC transporter ATP-binding protein yjjK [Klebsiella sp. 1_1_55]
          Length = 555

 Score = 36.2 bits (82), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNVEYQKRNETNELFIPP--GAR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 319 LGDKVLEVSHLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|51594941|ref|YP_069132.1| ABC transporter ATP-binding protein [Yersinia pseudotuberculosis IP
           32953]
 gi|153949023|ref|YP_001402444.1| ABC transporter ATP-binding protein [Yersinia pseudotuberculosis IP
           31758]
 gi|170025833|ref|YP_001722338.1| putative ABC transporter ATP-binding protein [Yersinia
           pseudotuberculosis YPIII]
 gi|186893941|ref|YP_001871053.1| putative ABC transporter ATP-binding protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51588223|emb|CAH19830.1| putative ABC drug efflux transporter, fused ATP binding domains
           [Yersinia pseudotuberculosis IP 32953]
 gi|152960518|gb|ABS47979.1| ABC transporter, ATP-binding protein [Yersinia pseudotuberculosis
           IP 31758]
 gi|169752367|gb|ACA69885.1| ABC transporter related [Yersinia pseudotuberculosis YPIII]
 gi|186696967|gb|ACC87596.1| ABC transporter related [Yersinia pseudotuberculosis PB1/+]
          Length = 555

 Score = 36.2 bits (82), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E L+K Y   +           LI  +   L K           ++ ++G N
Sbjct: 319 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V LA+ D FR    D   +W + +    +    
Sbjct: 359 GAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 418

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             E+ S A    +      Q K++  L     GR+H   +L  G G M+
Sbjct: 419 NFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVG-GNML 466


>gi|283788567|ref|YP_003368432.1| ABC transporter ATP-binding protein [Citrobacter rodentium ICC168]
 gi|282952021|emb|CBG91750.1| ABC transporter, ATP-binding protein [Citrobacter rodentium ICC168]
          Length = 555

 Score = 36.2 bits (82), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         +   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K+VE          VS  R  Y    LI  +   + K           ++ ++G NG
Sbjct: 319 LGDKVVE----------VSNLRKSYGDRLLIDDLSFSVPKG---------AIVGIIGPNG 359

Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +IG
Sbjct: 360 AGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKIG 418

Query: 176 -SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|157376092|ref|YP_001474692.1| adenylyl-sulfate kinase [Shewanella sediminis HAW-EB3]
 gi|157318466|gb|ABV37564.1| Adenylyl-sulfate kinase [Shewanella sediminis HAW-EB3]
          Length = 228

 Score = 36.2 bits (82), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW-ADRTSA 167
           H P V+   G++G GK+TV   + K + D G K  +  GD  R      L    ADR   
Sbjct: 47  HAPAVLWFTGLSGSGKSTVANAVDKMLHDLGCKTYVLDGDNVRHGLNGDLGFSDADRVEN 106

Query: 168 DFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS-ILMAGIGKMIRVLK 223
                E+     DA  L   AF     +  + +    +   H+NS  +   I   I V +
Sbjct: 107 IRRIGEVSKLFVDAGLLVSTAFISPFVEDRESVRAQLSDSQHSNSQFIEVYIDTPIEVCE 166

Query: 224 RLDP 227
           + DP
Sbjct: 167 QRDP 170


>gi|219667957|ref|YP_002458392.1| cobalamin synthesis protein P47K [Desulfitobacterium hafniense
           DCB-2]
 gi|219538217|gb|ACL19956.1| cobalamin synthesis protein P47K [Desulfitobacterium hafniense
           DCB-2]
          Length = 363

 Score = 36.2 bits (82), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +  +ILV G  GVGKTT++G+ ++++S  G KV L   D   S  +D   ++ ++T  + 
Sbjct: 2   KTKLILVGGFLGVGKTTLLGEAARRLSQTGRKVGLITNDQ-ASELVD--TVYLEQTGTEV 58

Query: 170 VCSEIGSDAAALAYEAFKQA-----QAKKVDVLIIDTAG 203
             SE+        +  F +A       K  D++I +  G
Sbjct: 59  --SEVSGSCFCCNFPGFMEAIDHVNAHKPADIIIAEPVG 95


>gi|251788164|ref|YP_003002885.1| putative ABC transporter ATP-binding protein [Dickeya zeae Ech1591]
 gi|247536785|gb|ACT05406.1| ABC transporter related [Dickeya zeae Ech1591]
          Length = 554

 Score = 36.2 bits (82), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 39/230 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K +    D ++S  ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQNPKGRQAKG-KARLARFDELNS--VEYQKRNETSELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K+++ E LTK Y       RVL D                N  FS  +  ++ ++G 
Sbjct: 319 LGDKVLDVENLTKSYG-----DRVLID----------------NLSFSIPKGAIVGIIGP 357

Query: 120 NGVGKTTVIGKL-SKKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           NG GK+T+   L S++  D+G       V LA+ D FR    +   +W + +    +   
Sbjct: 358 NGAGKSTLFRMLSSQEQPDSGAISLGETVQLASVDQFRDKMDNSKTVWEEISGGQDIMRI 417

Query: 173 ---EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
              E+ S A    +      Q K++  L     GR+H   +L  G G M+
Sbjct: 418 GNFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRVHLAKLLQVG-GNML 466


>gi|205373670|ref|ZP_03226473.1| YfmM [Bacillus coahuilensis m4-4]
          Length = 518

 Score = 36.2 bits (82), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +V+++  +L+     PLS+P N     R   I +VG NG+GKTT++  L
Sbjct: 323 KVIFETKDLVIGYDQPLSQPLNLRME-RGQKIALVGANGIGKTTLLKSL 370


>gi|306836412|ref|ZP_07469389.1| cell division protein FtsY [Corynebacterium accolens ATCC 49726]
 gi|304567693|gb|EFM43281.1| cell division protein FtsY [Corynebacterium accolens ATCC 49726]
          Length = 551

 Score = 36.2 bits (82), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 11/127 (8%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           +G+  I+S+  LD+   EE+ED LI +D+G     K+ + L  K   + VS +    +  
Sbjct: 429 QGLMGILSAGDLDEDAWEEIEDTLIMADLGTKSTMKVTDSLRDKIAERGVSSEE---EAR 485

Query: 90  ELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
            ++ + L+    P   D S R       P +++VVGVNG GKTT  GKL++ +      V
Sbjct: 486 AMLRECLIEACHP-EMDRSIRAMPNDGKPAIVMVVGVNGTGKTTTTGKLARVLVSMDHSV 544

Query: 143 MLAAGDT 149
           +L A DT
Sbjct: 545 LLGAADT 551


>gi|262044965|ref|ZP_06018007.1| ABC superfamily ATP binding cassette transporter [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037692|gb|EEW38921.1| ABC superfamily ATP binding cassette transporter [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 548

 Score = 36.2 bits (82), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNVEYQKRNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y   V +  + + V                     +  ++ ++G N
Sbjct: 312 LGDKVLEVSHLCKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 352 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 410

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 411 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455


>gi|218703140|ref|YP_002410769.1| putative ABC transporter ATP-binding protein [Escherichia coli
           IAI39]
 gi|218373126|emb|CAR21020.1| fused putative transporter subunits of ABC superfamily: ATP-binding
           components [Escherichia coli IAI39]
          Length = 555

 Score = 36.2 bits (82), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+ TKG  S          ++ S+       R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GPR 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E          VS  R  Y    LI  +   + K           ++ ++G NG
Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDDLSFSIPKG---------AIVGIIGPNG 359

Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            GK+T+   +S ++  D+G       V LA+ D FR +  +   +W +  S      +IG
Sbjct: 360 AGKSTLFSMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVW-EEVSGGLDIMKIG 418

Query: 176 -SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|29829443|ref|NP_824077.1| LuxR family transcriptional regulator [Streptomyces avermitilis
           MA-4680]
 gi|15823973|dbj|BAB69190.1| luxR-family transcriptional regulatory protein [Streptomyces
           avermitilis]
 gi|29606551|dbj|BAC70612.1| LuxR-family transcriptional regulator [Streptomyces avermitilis
           MA-4680]
          Length = 942

 Score = 36.2 bits (82), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 40/215 (18%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA----IDQLKIWADRTSAD 168
           V+LV    GVG+T ++    +K +++G +V  AAG +  + A    + QL        A 
Sbjct: 12  VVLVNAGPGVGRTALLDAFLRKATESGARVCAAAGSSAETEAEFGVVGQLFPPTGPLGAG 71

Query: 169 F-VCSEIGSDAAALA------YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           F +   IGS  A         ++A  Q   ++  V+ +D A +L + + L     + +R 
Sbjct: 72  FRLARAIGSRDAGPGLDADRLFDALCQELRRRPTVIAVDDA-QLADAASL-----RFLRY 125

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALR---QVEMF-HAVAGTTGLIMTKMDGTARGGGLIP 277
           L R    AP  V+ VL   TG +AL    Q E+  H      GL+    DG  +      
Sbjct: 126 LVRRLRTAP--VMMVLTEPTGPDALPPSFQAELLRHPQCRRLGLLPLSRDGVTQ------ 177

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            VV+ ++           +D  P +A DF A+  G
Sbjct: 178 -VVSAQV----------GSDRVPRLAADFHAISGG 201


>gi|291563822|emb|CBL42638.1| ATPase components of ABC transporters with duplicated ATPase
           domains [butyrate-producing bacterium SS3/4]
          Length = 517

 Score = 36.2 bits (82), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +++++  +L+     PLSKP N+    R   I V+G NG+GKTT +
Sbjct: 323 KLIFETRDLVIGYDEPLSKPLNF-LMERGEKIAVIGANGIGKTTFL 367


>gi|288549364|ref|ZP_05966866.2| hypothetical protein ENTCAN_05213 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318839|gb|EFC57777.1| ABC transporter, ATP-binding protein YjiK [Enterobacter
           cancerogenus ATCC 35316]
          Length = 548

 Score = 36.2 bits (82), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 91/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +         +   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNTEYQKRNETNELFIPP--GAR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K+VE   L K Y       RVL D         +  S P       +  ++ ++G N
Sbjct: 312 LGDKVVEVSNLRKSYG-----DRVLIDD--------LSFSVP-------KGAIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S       I
Sbjct: 352 GAGKSTLFRMMSGQEQPDSGSITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMRI 410

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 411 GNTEMPSRAYVGRFNFKGTDQGKRVGELSGGERGRLHLAKLLQVG 455


>gi|170079656|ref|YP_001736290.1| DNA helicase, TrwC and TraI like protein [Synechococcus sp. PCC
           7002]
 gi|169887325|gb|ACB01034.1| DNA helicase, TrwC and TraI like protein [Synechococcus sp. PCC
           7002]
          Length = 1249

 Score = 36.2 bits (82), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 27/170 (15%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
           + R +  G+R   E+ LIR  + +A+ Q           A    +  +L   ++L   + 
Sbjct: 344 NPRLIRRGLRLATEESLIREKMTIALMQ-----------AGQGKLAPMLTTQTQLSEVLT 392

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              +   N   S +  V+  VGV G GKT  +  L K     G++V   A D        
Sbjct: 393 TSQTDAVNHALSSQDRVVGWVGVAGAGKTFTLNTLVKIAQAQGIEVSGFAPDA------- 445

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ-AKKVDVLIIDTAGRL 205
                   +SA+ +  E+G     +AY   +Q + ++K  + +ID AG+L
Sbjct: 446 --------SSAEVLGDEVGIGTDTVAYHLLQQHEPSQKRQLWLIDEAGKL 487


>gi|150017889|ref|YP_001310143.1| ABC transporter [Clostridium beijerinckii NCIMB 8052]
 gi|149904354|gb|ABR35187.1| ABC transporter related [Clostridium beijerinckii NCIMB 8052]
          Length = 517

 Score = 36.2 bits (82), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++ +VS LI     PLSKP N     R   I V G NG+GKTT++  L
Sbjct: 321 ESIILEVSNLIIGYNRPLSKPLNLKMK-RGQKIAVTGANGLGKTTLLKTL 369


>gi|332158693|ref|YP_004423972.1| adenylylsulfate kinase [Pyrococcus sp. NA2]
 gi|331034156|gb|AEC51968.1| adenylylsulfate kinase [Pyrococcus sp. NA2]
          Length = 178

 Score = 36.2 bits (82), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           I + G +G GKTT+  KL+KK+ + G +V +  GDT R      L
Sbjct: 10  IWLTGPSGAGKTTLAVKLAKKLREMGYRVEILDGDTIRKTLYPNL 54


>gi|332994106|gb|AEF04161.1| flagellar biosynthesis protein [Alteromonas sp. SN2]
          Length = 463

 Score = 36.2 bits (82), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 21/153 (13%)

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT+R AA +QL  +          ++   + + L +      Q +   +++IDTAG    
Sbjct: 287 DTYRIAAFEQLATYGKIIGCTVRKAQSSEELSDLLF------QLRHKRLVLIDTAGFSQR 340

Query: 208 NSILMAGI-----GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           +S L+  I     G+M  V K L          V  A T   AL+++   +     +G I
Sbjct: 341 DSRLIKQINQFDNGQMQPVKKYL----------VAQANTQYAALQRIIDAYEGVELSGCI 390

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            TK+D     G ++   V +++PV ++  G+ +
Sbjct: 391 FTKLDECYSLGEVLSAAVEYQLPVSYVTDGQKV 423


>gi|45443468|ref|NP_995007.1| putative ABC transporter ATP-binding protein [Yersinia pestis
           biovar Microtus str. 91001]
 gi|145600442|ref|YP_001164518.1| putative ABC transporter ATP-binding protein [Yersinia pestis
           Pestoides F]
 gi|162419068|ref|YP_001605397.1| putative ABC transporter ATP-binding protein [Yersinia pestis
           Angola]
 gi|229836973|ref|ZP_04457138.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis Pestoides
           A]
 gi|45438337|gb|AAS63884.1| ATPase components of ABC transporters with duplicated ATPase
           domains [Yersinia pestis biovar Microtus str. 91001]
 gi|145212138|gb|ABP41545.1| ATPase [Yersinia pestis Pestoides F]
 gi|162351883|gb|ABX85831.1| ABC transporter, ATP-binding protein [Yersinia pestis Angola]
 gi|229705916|gb|EEO91925.1| ABC transporter ATP-binding protein yjjK [Yersinia pestis Pestoides
           A]
          Length = 555

 Score = 36.2 bits (82), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E L+K Y   +           LI  +   L K           ++ ++G N
Sbjct: 319 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V LA+ D FR    D   +W + +    +    
Sbjct: 359 GAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 418

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             E+ S A    +      Q K++  L     GR+H   +L  G G M+
Sbjct: 419 NFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVG-GNML 466


>gi|319404038|emb|CBI77626.1| DNA repair protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 471

 Score = 36.2 bits (82), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           R   +L+ G  G+GK+T++ + +  +S  G  V+  +G+     AI Q+++ A R +A  
Sbjct: 88  RGSALLIAGDPGIGKSTLLTQTAAALSQKGYNVIYVSGE----EAITQIRLRAQRLNATN 143

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
              ++ ++       A      KK+D++I+D+   L +N
Sbjct: 144 TAVQLAAETNVEDILATLNTH-KKLDMVIVDSIQTLWSN 181


>gi|325000894|ref|ZP_08122006.1| cobalamin synthesis protein [Pseudonocardia sp. P1]
          Length = 336

 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 9/96 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA----- 167
           V+++ G  G GKTT++  L     DA + V++   + F S  ID +++            
Sbjct: 7   VVVLAGFLGAGKTTLLNHLLATGGDARIGVVV---NDFGSVGIDAMRLAGQAGEVVGLGN 63

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
             +C E+G D  A   E   + +  ++DV++I+ +G
Sbjct: 64  GCLCCEVGEDGVAGVLENLTR-RRDEIDVIVIEASG 98


>gi|294502543|ref|YP_003566605.1| ATPase [Yersinia pestis Z176003]
 gi|262360573|gb|ACY57294.1| ATPase [Yersinia pestis D106004]
 gi|262364519|gb|ACY61076.1| ATPase [Yersinia pestis D182038]
 gi|294353002|gb|ADE63343.1| ATPase [Yersinia pestis Z176003]
          Length = 343

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 52  ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 106

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E L+K Y   +           LI  +   L K           ++ ++G N
Sbjct: 107 LGDKVLEVEHLSKSYGDRL-----------LIDDLTFALPKG---------AIVGIIGPN 146

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V LA+ D FR    D   +W + +    +    
Sbjct: 147 GAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSGGQDIMKIG 206

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             E+ S A    +      Q K++  L     GR+H   +L  G G M+
Sbjct: 207 NFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVG-GNML 254


>gi|126464405|ref|YP_001045518.1| LAO/AO transport system ATPase [Rhodobacter sphaeroides ATCC 17029]
 gi|126106216|gb|ABN78746.1| LAO/AO transport system ATPase [Rhodobacter sphaeroides ATCC 17029]
          Length = 323

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           HV+ + GV G GK+T++ KL +K+ DAG +V + A D
Sbjct: 52  HVVGITGVPGSGKSTMVSKLVRKLLDAGERVAVVAID 88


>gi|307132673|ref|YP_003884689.1| ABC transporter ATP-binding protein yjjK [Dickeya dadantii 3937]
 gi|306530202|gb|ADN00133.1| ABC transporter ATP-binding protein yjjK [Dickeya dadantii 3937]
          Length = 554

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 45/233 (19%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K +    D ++S  ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQNPKGRQAKG-KARLARFDELNS--VEYQKRNETSELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGV 119
           +  K++E + LTK Y       RVL D                N  F+  +  ++ ++G 
Sbjct: 319 LGDKVLEVQNLTKSYG-----DRVLID----------------NLSFAIPKGSIVGIIGP 357

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--------IWADRTSADFV 170
           NG GK+T+   LS ++  D+G    ++ G+T + A++DQ +        +W + +    +
Sbjct: 358 NGAGKSTLFRMLSAQEQPDSG---TISLGETVQLASVDQFRDKMDGSKTVWEEVSGGQDI 414

Query: 171 CS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
                 EI S A    +      Q K++  L     GR+H   +L  G G M+
Sbjct: 415 MRIGNFEIPSRAYVGRFNFKGVDQGKRIGELSGGERGRVHLAKLLQVG-GNML 466


>gi|257416619|ref|ZP_05593613.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis AR01/DG]
 gi|257158447|gb|EEU88407.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis ARO1/DG]
          Length = 580

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           E + +++ P + P   D  +  H     VI  +G  GVGKTT+   ++  ++D G KV L
Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358

Query: 145 AAGDT-----FRSAAIDQLKIW---ADRTSADFV 170
           A  D      F  +  DQ+K+     D+  AD+ 
Sbjct: 359 ATTDPAAHLQFVISESDQIKVSHIDEDKELADYT 392


>gi|301299290|ref|ZP_07205576.1| SRP54-type protein, helical bundle domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853134|gb|EFK80732.1| SRP54-type protein, helical bundle domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 138

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL 99
           V  E+   L+ +D+   V +  V+ + ++    +V       Q+++  V+E + K++   
Sbjct: 31  VMREIRLALLEADVNFKVVKDFVKTVRSRAIGAEVLESLTPAQQIVKIVNEELVKVMGEE 90

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           + P N   +  P +I++VG+ G GKTT   KL+ K+
Sbjct: 91  AAPLNKS-AKIPTIIMMVGLQGAGKTTTASKLANKV 125


>gi|303327220|ref|ZP_07357662.1| ABC transporter, ATP-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863208|gb|EFL86140.1| ABC transporter, ATP-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 560

 Score = 35.8 bits (81), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 89/230 (38%), Gaps = 52/230 (22%)

Query: 4   QKVASESLSWIRKLTKGF---ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           QK  S  L WIR   KG        +   E +    S +R  D        L I    G 
Sbjct: 271 QKTLSRELEWIRMSPKGRHAKGKARINAYEAMLSHESEKRAPD--------LEIYIPPGP 322

Query: 61  AVAQKIVEELLTKRYAKDVSVQ---RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
            + + ++E        KDVS     R+L D +E     L+P              ++ ++
Sbjct: 323 RLGKSVIE-------LKDVSKSMGDRLLMDKAE----ALIPAGA-----------IVGII 360

Query: 118 GVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADFVCS-- 172
           G NG GKTT+   L  ++  D+G    L+ G+T   A +DQ +  +   +T  + +    
Sbjct: 361 GPNGAGKTTLFKMLVGQEKPDSG---SLSVGETVEFAYVDQGRESLTPGKTVYELISDGQ 417

Query: 173 --------EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
                   EI + A    +      Q KKVD+L      RLH   +L +G
Sbjct: 418 ETIRLGGREINARAYCTRFNFHGADQQKKVDMLSGGERNRLHLARMLKSG 467


>gi|256618579|ref|ZP_05475425.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis ATCC
           4200]
 gi|256598106|gb|EEU17282.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis ATCC
           4200]
          Length = 580

 Score = 35.8 bits (81), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-----FRSAAIDQLKIW---ADR 164
           VI  +G  GVGKTT+   ++  ++D G KV LA  D      F  A  DQ+K+     D+
Sbjct: 327 VIFTMGKGGVGKTTIAAAIATGLADKGKKVHLATTDPAAHLQFVIAESDQIKVSHIDEDK 386

Query: 165 TSADFV 170
             AD+ 
Sbjct: 387 ELADYT 392


>gi|153855897|ref|ZP_01996859.1| hypothetical protein DORLON_02884 [Dorea longicatena DSM 13814]
 gi|149751800|gb|EDM61731.1| hypothetical protein DORLON_02884 [Dorea longicatena DSM 13814]
          Length = 455

 Score = 35.8 bits (81), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 29/139 (20%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS--ADFV 170
           ++LV G  G+GK+T++ ++ +K++D   KV+  +G+     ++ Q+K+ A+R    AD +
Sbjct: 93  LVLVGGDPGIGKSTLLLQVCQKLADKQKKVLYISGE----ESLKQIKLRANRMGEFADSL 148

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                ++ AA+     K+      DV++ID+   ++N  +                  AP
Sbjct: 149 FLLCETNLAAIQSVIEKETP----DVVVIDSIQTMYNEEV----------------SSAP 188

Query: 231 HSVLQVLDATTGQNALRQV 249
            SV QV ++T   N L Q+
Sbjct: 189 GSVSQVREST---NVLMQL 204


>gi|315171675|gb|EFU15692.1| arsenite-activated ATPase [Enterococcus faecalis TX1342]
          Length = 580

 Score = 35.8 bits (81), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-----FRSAAIDQLKIW---ADR 164
           VI  +G  GVGKTT+   ++  ++D G KV LA  D      F  A  DQ+K+     D+
Sbjct: 327 VIFTMGKGGVGKTTIAAAIATGLADKGKKVHLATTDPAAHLQFVIAESDQIKVSHIDEDK 386

Query: 165 TSADFV 170
             AD+ 
Sbjct: 387 ELADYT 392


>gi|257079614|ref|ZP_05573975.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis JH1]
 gi|294780894|ref|ZP_06746248.1| putative arsenite-transporting ATPase [Enterococcus faecalis PC1.1]
 gi|256987644|gb|EEU74946.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis JH1]
 gi|294452020|gb|EFG20468.1| putative arsenite-transporting ATPase [Enterococcus faecalis PC1.1]
          Length = 580

 Score = 35.8 bits (81), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           E + +++ P + P   D  +  H     VI  +G  GVGKTT+   ++  ++D G KV L
Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358

Query: 145 AAGDT-----FRSAAIDQLKIW---ADRTSADFV 170
           A  D      F  +  DQ+K+     D+  AD+ 
Sbjct: 359 ATTDPAAHLQFVISESDQIKVSHIDEDKELADYT 392


>gi|315161703|gb|EFU05720.1| arsenite-activated ATPase [Enterococcus faecalis TX0645]
          Length = 580

 Score = 35.8 bits (81), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           E + +++ P + P   D  +  H     VI  +G  GVGKTT+   ++  ++D G KV L
Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358

Query: 145 AAGDT-----FRSAAIDQLKIW---ADRTSADFV 170
           A  D      F  +  DQ+K+     D+  AD+ 
Sbjct: 359 ATTDPAAHLQFVISESDQIKVSHIDEDKELADYT 392


>gi|74318448|ref|YP_316188.1| putative ABC transporter ATP-binding protein [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057943|gb|AAZ98383.1| ABC transporter ATPase [Thiobacillus denitrificans ATCC 25259]
          Length = 595

 Score = 35.8 bits (81), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 31/173 (17%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL---SKPF-------NWDFSHRPHVIL-V 116
           EEL +  Y K    Q +   V E +   ++     SK F       +  FS  P  I+ +
Sbjct: 335 EELNSAEYQKRNETQEIFIPVGERLGDKVIDFHNVSKSFGDRLLIDDLSFSVPPGAIVGI 394

Query: 117 VGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADFVCSE 173
           +G NG GK+T    ++ ++  D+G    +  G T + A +DQ +  + AD+T  D V   
Sbjct: 395 IGPNGAGKSTFFKMITGQEKPDSG---EVEIGQTVKLAYVDQSRDALAADKTVFDEVAE- 450

Query: 174 IGSDAAALA-YEAFKQA-----------QAKKVDVLIIDTAGRLHNNSILMAG 214
            G D  A+  YE   +A           Q K+V  L     GRLH    L++G
Sbjct: 451 -GRDILAVGRYEIPSRAYLGRFNFKGGDQQKRVGDLSGGERGRLHMAKTLISG 502


>gi|260847281|ref|YP_003225059.1| fused putative transporter subunits of ABC superfamily: ATP-binding
           components [Escherichia coli O103:H2 str. 12009]
 gi|257762428|dbj|BAI33925.1| fused predicted transporter subunits of ABC superfamily:
           ATP-binding components [Escherichia coli O103:H2 str.
           12009]
          Length = 555

 Score = 35.8 bits (81), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+ TKG  S          ++ S+       R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GPR 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E          VS  R  Y    LI  +   + K           ++ ++G NG
Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDDLSFSIPKG---------AIVGIIGPNG 359

Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            GK+T+   +S ++  D+G       V LA+ D FR +  +   +W +  S      +IG
Sbjct: 360 AGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVW-EEVSGGLDIMKIG 418

Query: 176 -SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKVLQVG-GNML 466


>gi|257065653|ref|YP_003151909.1| DNA repair protein RadA [Anaerococcus prevotii DSM 20548]
 gi|256797533|gb|ACV28188.1| DNA repair protein RadA [Anaerococcus prevotii DSM 20548]
          Length = 456

 Score = 35.8 bits (81), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 13/96 (13%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           R  V ++    G GK+T++ +LSK  +D GLKV+  +G+   S    Q+K  ADR  ++ 
Sbjct: 85  RDSVSILTARPGAGKSTLLLQLSKSYADKGLKVIYISGEESES----QIKSRADRIMSEL 140

Query: 170 VCSE----IGSDAAALAYEAFKQAQAKKVDVLIIDT 201
             SE    + +++  LA +  K   A   D++ +D+
Sbjct: 141 --SENIWILSTNSMDLAIKEIKNVDA---DIVFLDS 171


>gi|221368952|ref|YP_002520048.1| LAO/AO transport system ATPase [Rhodobacter sphaeroides KD131]
 gi|221162004|gb|ACM02975.1| LAO/AO transport system ATPase [Rhodobacter sphaeroides KD131]
          Length = 323

 Score = 35.8 bits (81), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           HV+ + GV G GK+T++ KL +K+ DAG +V + A D
Sbjct: 52  HVVGITGVPGSGKSTMVSKLVRKLLDAGERVAVVAID 88


>gi|152973310|ref|YP_001338456.1| putative ABC transporter ATP-binding protein [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|330006931|ref|ZP_08305800.1| ATP-binding cassette protein, ChvD family [Klebsiella sp. MS 92-3]
 gi|150958159|gb|ABR80189.1| putative ATP-binding component of a transport system [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328535618|gb|EGF62070.1| ATP-binding cassette protein, ChvD family [Klebsiella sp. MS 92-3]
          Length = 548

 Score = 35.8 bits (81), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNVEYQKRNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y   V +  + + V                     +  ++ ++G N
Sbjct: 312 LGDKVLEVSHLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 352 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 410

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 411 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455


>gi|238892977|ref|YP_002917711.1| putative ABC transporter ATP-binding protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545293|dbj|BAH61644.1| putative ATP-binding component of a transport system [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 555

 Score = 35.8 bits (81), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNNVEYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y   V +  + + V                     +  ++ ++G N
Sbjct: 319 LGDKVLEVSHLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|18450319|ref|NP_569190.1| hypothetical protein pli0037 [Listeria innocua Clip11262]
 gi|16415820|emb|CAC42035.1| pli0037 [Listeria innocua Clip11262]
 gi|332312689|gb|EGJ25784.1| Arsenical pump-driving ATPase [Listeria monocytogenes str. Scott A]
          Length = 580

 Score = 35.8 bits (81), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           E + +++ P + P   D  +  H     VI  +G  GVGKTT+   ++  ++D G KV L
Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358

Query: 145 AAGDT-----FRSAAIDQLKIW---ADRTSADFV 170
           A  D      F  +  DQ+K+     D+  AD+ 
Sbjct: 359 ATTDPAAHLQFVISESDQIKVSHIDEDKELADYT 392


>gi|218780796|ref|YP_002432114.1| DNA repair protein RadA [Desulfatibacillum alkenivorans AK-01]
 gi|218762180|gb|ACL04646.1| DNA repair protein RadA [Desulfatibacillum alkenivorans AK-01]
          Length = 456

 Score = 35.8 bits (81), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 8/66 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           ++L+ G  G+GK+T++ ++ + ++ AGLKV+  +G+     ++ Q+K+ + RT +     
Sbjct: 93  MVLIGGDPGIGKSTLMLQVMQSLAYAGLKVLYVSGEE----SVRQIKLRSQRTGSPSPNL 148

Query: 169 FVCSEI 174
           FV SEI
Sbjct: 149 FVYSEI 154


>gi|313889467|ref|ZP_07823115.1| arsenite-transporting ATPase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|157419736|gb|ABV55425.1| arsenical pump-driving ATPase ArsA [Streptococcus dysgalactiae
           subsp. equisimilis]
 gi|313122299|gb|EFR45390.1| arsenite-transporting ATPase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 580

 Score = 35.8 bits (81), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           E + +++ P + P   D  +  H     VI  +G  GVGKTT+   ++  ++D G KV L
Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSDKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358

Query: 145 AAGDT-----FRSAAIDQLKIW---ADRTSADFV 170
           A  D      F  +  DQ+K+     D+  AD+ 
Sbjct: 359 ATTDPAAHLQFVISESDQIKVSHIDEDKELADYT 392


>gi|238752649|ref|ZP_04614121.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           rohdei ATCC 43380]
 gi|238709163|gb|EEQ01409.1| Uncharacterized ABC transporter ATP-binding protein [Yersinia
           rohdei ATCC 43380]
          Length = 529

 Score = 35.8 bits (81), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  +   K K  +        ++   R E  +L I    G  
Sbjct: 238 ARRKSIEKELEWVRQNPKGRQA---KGKARLARFEELNSVEYQKRNETSELFIPP--GPR 292

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E E L+K Y   V           LI  +   L K           ++ ++G N
Sbjct: 293 LGDKVLEVEHLSKSYGDRV-----------LIDDLTFALPKG---------AIVGIIGPN 332

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-- 172
           G GK+T+   LS ++  D+G       V+LA+ D FR        +W + +    +    
Sbjct: 333 GAGKSTLFRMLSGQEQPDSGTISLGDTVILASVDQFRDNMDGSKTVWEEVSGGQDIMKIG 392

Query: 173 --EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             EI S A    +      Q K+V  L     GR+H   +L  G G M+
Sbjct: 393 NFEIPSRAYVGRFNFKGIDQGKRVGELSGGERGRIHLAKLLQVG-GNML 440


>gi|326626260|gb|EGE32605.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 548

 Score = 35.8 bits (81), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y   V +  + + V                     +  ++ ++G N
Sbjct: 312 LGDKVIEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 352 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 410

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 411 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455


>gi|255976358|ref|ZP_05426944.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis T2]
 gi|255969230|gb|EET99852.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis T2]
          Length = 580

 Score = 35.8 bits (81), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           E + +++ P + P   D  +  H     VI  +G  GVGKTT+   ++  ++D G KV L
Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358

Query: 145 AAGDT-----FRSAAIDQLKIW---ADRTSADFV 170
           A  D      F  +  DQ+K+     D+  AD+ 
Sbjct: 359 ATTDPAAHLQFVISESDQIKVSHIDEDKELADYT 392


>gi|161504876|ref|YP_001571988.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866223|gb|ABX22846.1| hypothetical protein SARI_03002 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 548

 Score = 35.8 bits (81), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y   V +  + + V                     +  ++ ++G N
Sbjct: 312 LGDKVIEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 351

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 352 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 410

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 411 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 455


>gi|119953215|ref|YP_945424.1| DNA repair protein RadA [Borrelia turicatae 91E135]
 gi|119861986|gb|AAX17754.1| DNA repair protein RadA [Borrelia turicatae 91E135]
          Length = 462

 Score = 35.8 bits (81), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 67/134 (50%), Gaps = 22/134 (16%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR---TSADFV 170
           IL+ G  G+GK+T + ++S  +S +   V+  AG+     +I Q+K+ A+R   +S   +
Sbjct: 91  ILISGEPGIGKSTFLLQISSILSLSDKNVLYLAGE----ESIPQIKLRANRLRISSDILI 146

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +EI  D+        K     ++D +++D+   LH+  +   G+G + ++         
Sbjct: 147 TNEINVDS------LIKMLANIELDFIVVDSIQTLHSKEV-QGGLGGVAQL--------K 191

Query: 231 HSVLQVLDATTGQN 244
           H V ++++   G+N
Sbjct: 192 HCVYKLIEWARGKN 205


>gi|149377813|ref|ZP_01895545.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Marinobacter algicola DG893]
 gi|149357928|gb|EDM46418.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Marinobacter algicola DG893]
          Length = 546

 Score = 35.8 bits (81), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 96/230 (41%), Gaps = 49/230 (21%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S QK     L W+R   KG  S S K +    + +SS+      R E  +L I    G  
Sbjct: 257 SRQKTIKHELEWVRSNAKGRQSKS-KARLARFEEMSSQEFQK--RNETNELYIPP--GPR 311

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVG 118
           +  K++E + ++K +       R+LY DVS         LS P        P  I+ ++G
Sbjct: 312 LGDKVIEIDGISKSFD-----DRLLYEDVS---------LSVP--------PGAIVGIIG 349

Query: 119 VNGVGKTTV---IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK-------IWADRTSAD 168
            NG GK+T+   IG   K  S       +  G+T R A +DQ++       +W + +  +
Sbjct: 350 GNGAGKSTLFRMIGDYDKPNSGT-----ITVGETVRLAYVDQMRDLNGDNTVWEELSDGN 404

Query: 169 FVCSEIGSDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
            +      +  + AY     FK + Q K+V  L      RLH   +L  G
Sbjct: 405 DIIKIGNYETPSRAYVGRFNFKGSDQQKRVADLSGGERNRLHLAKLLKEG 454


>gi|108809829|ref|YP_653745.1| ATPase [Yersinia pestis Antiqua]
 gi|167400607|ref|ZP_02306116.1| ATPase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|108781742|gb|ABG15800.1| ATPase [Yersinia pestis Antiqua]
 gi|167049975|gb|EDR61383.1| ATPase [Yersinia pestis biovar Antiqua str. UG05-0454]
          Length = 278

 Score = 35.8 bits (81), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTS 166
           ++ ++G NG GK+T+   LS ++  D+G       V LA+ D FR    D   +W + + 
Sbjct: 74  IVGIIGPNGAGKSTLFRMLSGQEQPDSGTISLGDTVQLASVDQFRDNMDDSKTVWEEVSG 133

Query: 167 ADFVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
              +      E+ S A    +      Q K++  L     GR+H   +L  G G M+
Sbjct: 134 GQDIMKIGNFELPSRAYVGRFNFKGVDQGKRIGELSGGERGRIHLAKLLQVG-GNML 189


>gi|110808179|ref|YP_691699.1| putative ABC transporter ATP-binding protein [Shigella flexneri 5
           str. 8401]
 gi|110617727|gb|ABF06394.1| putative ATP-binding component of a transport system [Shigella
           flexneri 5 str. 8401]
          Length = 548

 Score = 35.8 bits (81), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 35/228 (15%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+ TKG  S          ++ S+       R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GPR 311

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E          VS  R  Y    LI  +   + K           ++ ++G NG
Sbjct: 312 LGDKVLE----------VSNLRKSYGDRLLIDDLSFSIPKG---------AIVGIIGPNG 352

Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSA----DFVC 171
            GK+T+   +S ++  D+G       V LA+ D FR +  +   +W + +          
Sbjct: 353 AGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVWEEVSGGLDIMKIGN 412

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +EI S A    +      Q K+V  L     GRLH   +L  G G M+
Sbjct: 413 TEIPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459


>gi|261249661|emb|CBG27532.1| conserved hypothetical ABC transporter [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
          Length = 555

 Score = 35.8 bits (81), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y   V +  + + V                     +  ++ ++G N
Sbjct: 319 LGDKVIEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|168234714|ref|ZP_02659772.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194738154|ref|YP_002117492.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194713656|gb|ACF92877.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291789|gb|EDY31139.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 555

 Score = 35.8 bits (81), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y   V +  + + V                     +  ++ ++G N
Sbjct: 319 LGDKVIEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|89072601|ref|ZP_01159173.1| putative ABC transporter, ATP-binding protein [Photobacterium sp.
           SKA34]
 gi|89051705|gb|EAR57158.1| putative ABC transporter, ATP-binding protein [Photobacterium sp.
           SKA34]
          Length = 555

 Score = 35.8 bits (81), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 30/158 (18%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           QK   + L W+R+  KG  + S K +    + +S+   +   R E  +L I    G  + 
Sbjct: 266 QKTIEKELEWVRQNPKGRQAKS-KARMARFEELSTN--EHQKRNETNELFIPP--GERLG 320

Query: 64  QKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            K++E + LTK +       RVL D         +  S P       +  ++ ++G NG 
Sbjct: 321 DKVIEVKNLTKSFG-----DRVLIDD--------LSFSMP-------KGAIVGIIGANGA 360

Query: 123 GKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           GK+T+   LS  +  D+G    +  GDT + A++DQ +
Sbjct: 361 GKSTLFKMLSGTEQPDSG---TIELGDTVKLASVDQFR 395


>gi|222110404|ref|YP_002552668.1| ABC transporter ATP-binding protein [Acidovorax ebreus TPSY]
 gi|221729848|gb|ACM32668.1| ABC transporter related [Acidovorax ebreus TPSY]
          Length = 553

 Score = 35.8 bits (81), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 10/112 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTS 166
           ++ ++G NG GK+T+   ++ K+  D+G       V +A  D  R A  D   +W D + 
Sbjct: 350 IVGIIGPNGAGKSTLFKLIAGKEQPDSGTVEIGQTVKMAFVDQHRDALADDKTVWEDISG 409

Query: 167 ADFVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              + +    ++ S A A  +    Q Q KKV  L     GRLH    L+ G
Sbjct: 410 GLDIINVGKFQMASRAYAGRFNFNGQDQQKKVGNLSGGERGRLHLAKTLIQG 461


>gi|162452744|ref|YP_001615111.1| twitching motility protein [Sorangium cellulosum 'So ce 56']
 gi|161163326|emb|CAN94631.1| twitching motility protein [Sorangium cellulosum 'So ce 56']
          Length = 379

 Score = 35.8 bits (81), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 47/191 (24%)

Query: 102 PFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           P   D + +P  ++LV G  G GKTT +  +  K++      +L   D        +L +
Sbjct: 126 PVVLDITAKPRGLVLVTGPTGSGKTTTLASIIDKINSEQRLHILTIEDPIEYLHPHKLSL 185

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI---------IDTA--------- 202
              R        EIGSD A+   +A + A  +  DV++         +++A         
Sbjct: 186 VNQR--------EIGSDTASFK-DALRYALRQDPDVVLVGEMRDLETVESALTIAETGHL 236

Query: 203 --GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
               LH NS     I  + R++    PH              Q+ +RQ   F  VA  T 
Sbjct: 237 VFATLHTNS----AISTINRIIDVFPPHQ-------------QSQVRQQLSFTLVAVMTQ 279

Query: 261 LIMTKMDGTAR 271
           L++ + +G  R
Sbjct: 280 LLLPRANGPGR 290


>gi|296110940|ref|YP_003621321.1| transcriptional regulator, LysR family [Leuconostoc kimchii IMSNU
           11154]
 gi|295832471|gb|ADG40352.1| transcriptional regulator, LysR family [Leuconostoc kimchii IMSNU
           11154]
          Length = 274

 Score = 35.8 bits (81), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI- 210
           S A+DQL +  D +S  ++  E GS       + FKQ        L I       NN + 
Sbjct: 160 SIAVDQLVLAGDLSSDTWLVREKGSGVYHYMQQYFKQEYIVPSQFLTIS------NNDVI 213

Query: 211 ---LMAGIGKMIRVLKRLDPHAPHSVL 234
              L AGIGK I  ++ L  H P+  L
Sbjct: 214 VKMLSAGIGKSIVSIQSLPEHVPYKTL 240


>gi|253577149|ref|ZP_04854469.1| DNA repair protein RadA [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843393|gb|EES71421.1| DNA repair protein RadA [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 455

 Score = 35.8 bits (81), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 14/93 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR---TSAD- 168
           ++LV G  G+GK+T++ + S +M+ +GL+V+  +G+     ++ Q K+ A+R    SA+ 
Sbjct: 91  LVLVGGDPGIGKSTLLLQTSHEMARSGLRVLYISGEE----SVRQTKLRAERLGTLSAEL 146

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           FV  E   D    A E  K       + L+ID+
Sbjct: 147 FVLCESSMDGIEEAIEQVKP------NFLVIDS 173


>gi|257060212|ref|YP_003138100.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8802]
 gi|256590378|gb|ACV01265.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8802]
          Length = 378

 Score = 35.8 bits (81), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 15/134 (11%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+  P      H   V ++ G  G GKTT++  +       GLK  +   + F    ID 
Sbjct: 13  PMDTP-----KHGLPVTIITGFLGSGKTTLLNHILSNQE--GLKTAVLVNE-FGEIGIDN 64

Query: 158 LKIWAD-----RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
             I          S   VC  I  D     Y+  ++ +  KVD L+++T G      + +
Sbjct: 65  ELIVTTSDNMVELSNGCVCCTINEDLIQAVYKVLERPE--KVDYLVVETTGIADPLPVAL 122

Query: 213 AGIGKMIRVLKRLD 226
             +G  +R + RLD
Sbjct: 123 TFLGTELRDMTRLD 136


>gi|294816849|ref|ZP_06775491.1| Amino acid adenylation domain protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|294321664|gb|EFG03799.1| Amino acid adenylation domain protein [Streptomyces clavuligerus
           ATCC 27064]
          Length = 867

 Score = 35.8 bits (81), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 52/131 (39%), Gaps = 26/131 (19%)

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF- 186
           IG+L  + SD G   +L  GD  RS        WA  T  D V + +G+D +AL+Y    
Sbjct: 216 IGQLPGQASDPGPGDLLMPGDLVRS--------WAVATP-DAV-ALLGADGSALSYRELS 265

Query: 187 -----------KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
                      +  +   V VL  D+ G     ++ M       R    LDP APHS   
Sbjct: 266 ALADSLAARLERAGRGGPVAVLASDSEG----AALAMVACQFADRCFVMLDPDAPHSRNT 321

Query: 236 VLDATTGQNAL 246
            L A  G   L
Sbjct: 322 ALVAAAGCEVL 332


>gi|307717859|ref|YP_003873391.1| hypothetical protein STHERM_c01420 [Spirochaeta thermophila DSM
           6192]
 gi|306531584|gb|ADN01118.1| hypothetical protein STHERM_c01420 [Spirochaeta thermophila DSM
           6192]
          Length = 447

 Score = 35.8 bits (81), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 56/101 (55%), Gaps = 7/101 (6%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           R  V+LV G  GVGK+T++ +++ +++  G+KV+ AAG+     ++ Q+   A R     
Sbjct: 85  RGSVVLVGGEPGVGKSTLVLQVAARLA-GGVKVVYAAGEE----SVGQVAARAARLGCGK 139

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
              E+ ++    + EA    + ++ DV+++D+   L++  +
Sbjct: 140 AEVELAAETQVESLEAL--LRQRRADVVVVDSLQMLYSPQM 178


>gi|254389577|ref|ZP_05004803.1| phenyloxazoline synthase mbtB [Streptomyces clavuligerus ATCC
           27064]
 gi|197703290|gb|EDY49102.1| phenyloxazoline synthase mbtB [Streptomyces clavuligerus ATCC
           27064]
          Length = 883

 Score = 35.8 bits (81), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 8/122 (6%)

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAI---DQLKIWADRTSADFVCSEIGSDAAALAYE 184
           IG+L  + SD G   +L  GD  RS A+   D + +     SA     E+ + A +LA  
Sbjct: 232 IGQLPGQASDPGPGDLLMPGDLVRSWAVATPDAVALLGADGSA-LSYRELSALADSLAAR 290

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             +  +   V VL  D+ G     ++ M       R    LDP APHS    L A  G  
Sbjct: 291 LERAGRGGPVAVLASDSEG----AALAMVACQFADRCFVMLDPDAPHSRNTALVAAAGCE 346

Query: 245 AL 246
            L
Sbjct: 347 VL 348


>gi|16767822|ref|NP_463437.1| ABC transporter ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56416351|ref|YP_153426.1| ABC transporter ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161617892|ref|YP_001591857.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167552195|ref|ZP_02345948.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167989825|ref|ZP_02570925.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168230229|ref|ZP_02655287.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168464498|ref|ZP_02698401.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822122|ref|ZP_02834122.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444102|ref|YP_002043823.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194469367|ref|ZP_03075351.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197249939|ref|YP_002149524.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262659|ref|ZP_03162733.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197365273|ref|YP_002144910.1| ABC transporter ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198244231|ref|YP_002218452.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200388552|ref|ZP_03215164.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204927165|ref|ZP_03218367.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205355295|ref|YP_002229096.1| ABC transporter ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859702|ref|YP_002246353.1| ABC transporter ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|238910740|ref|ZP_04654577.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16423147|gb|AAL23396.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56130608|gb|AAV80114.1| conserved hypothetical ABC transporter [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161367256|gb|ABX71024.1| hypothetical protein SPAB_05759 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402765|gb|ACF62987.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194455731|gb|EDX44570.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195632583|gb|EDX51037.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197096750|emb|CAR62373.1| conserved hypothetical ABC transporter [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197213642|gb|ACH51039.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240914|gb|EDY23534.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197938747|gb|ACH76080.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605650|gb|EDZ04195.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204323830|gb|EDZ09025.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205275076|emb|CAR40165.1| conserved hypothetical ABC transporter [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205323135|gb|EDZ10974.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331494|gb|EDZ18258.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335037|gb|EDZ21801.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341427|gb|EDZ28191.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206711505|emb|CAR35890.1| conserved hypothetical ABC transporter [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|267996945|gb|ACY91830.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301161060|emb|CBW20597.1| conserved hypothetical ABC transporter [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915675|dbj|BAJ39649.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320089010|emb|CBY98766.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222450|gb|EFX47522.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322615742|gb|EFY12662.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322620590|gb|EFY17450.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322621783|gb|EFY18633.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627508|gb|EFY24299.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322630815|gb|EFY27579.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637967|gb|EFY34668.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642237|gb|EFY38845.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644958|gb|EFY41490.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651122|gb|EFY47507.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322656622|gb|EFY52910.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658720|gb|EFY54977.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322661838|gb|EFY58054.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666416|gb|EFY62594.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672428|gb|EFY68540.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676264|gb|EFY72335.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322679647|gb|EFY75692.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684357|gb|EFY80361.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323132922|gb|ADX20352.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323191839|gb|EFZ77088.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196690|gb|EFZ81837.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323200959|gb|EFZ86028.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209356|gb|EFZ94289.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212957|gb|EFZ97759.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216700|gb|EGA01425.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219803|gb|EGA04282.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226133|gb|EGA10350.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228786|gb|EGA12915.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236603|gb|EGA20679.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239897|gb|EGA23944.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242056|gb|EGA26085.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247504|gb|EGA31459.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323250605|gb|EGA34487.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323259335|gb|EGA42977.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263788|gb|EGA47309.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265618|gb|EGA49114.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270063|gb|EGA53511.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326630463|gb|EGE36806.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332991387|gb|AEF10370.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 555

 Score = 35.8 bits (81), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y   V +  + + V                     +  ++ ++G N
Sbjct: 319 LGDKVIEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|327400904|ref|YP_004341743.1| adenylyl-sulfate kinase [Archaeoglobus veneficus SNP6]
 gi|327316412|gb|AEA47028.1| Adenylyl-sulfate kinase [Archaeoglobus veneficus SNP6]
          Length = 172

 Score = 35.8 bits (81), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           VI + G +G GKTT+   L +K+S+ GL V +  GD  RS
Sbjct: 4   VIWLTGPSGAGKTTLANALYEKLSEMGLNVEVLDGDGIRS 43


>gi|319407050|emb|CBI80687.1| DNA repair protein [Bartonella sp. 1-1C]
          Length = 462

 Score = 35.8 bits (81), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           R   +L+ G  G+GK+T++ + +  +S  G  V+  +G+     AI Q+++ A R +A  
Sbjct: 88  RGSALLIAGDPGIGKSTLLTQTAAALSQKGYNVIYVSGE----EAITQIRLRAQRLNATD 143

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
              ++ ++       A   A  +K+D++I+D+   L +N
Sbjct: 144 TAVQLAAETNVEDILATLNAH-EKLDMVIVDSIQTLWSN 181


>gi|317130043|ref|YP_004096325.1| adenylylsulfate kinase [Bacillus cellulosilyticus DSM 2522]
 gi|315474991|gb|ADU31594.1| adenylylsulfate kinase [Bacillus cellulosilyticus DSM 2522]
          Length = 202

 Score = 35.8 bits (81), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +H+  V+   G++G GK+T+   + KK+ D G++  +  GD  R
Sbjct: 27  NHKGSVVWFTGLSGSGKSTLANAVEKKLHDQGIRTYVLDGDNIR 70


>gi|114777095|ref|ZP_01452115.1| ABC transporter related protein [Mariprofundus ferrooxydans PV-1]
 gi|114552616|gb|EAU55076.1| ABC transporter related protein [Mariprofundus ferrooxydans PV-1]
          Length = 556

 Score = 35.8 bits (81), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 30/158 (18%)

Query: 2   SNQKVASESLSWIRKLTKG-FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           S QK   E L W+R  TKG  A +  +LK    D +SSR + +  R   + + I S    
Sbjct: 266 SRQKAMREELEWVRAGTKGRHAKSKARLK--AFDNLSSREMQE--RNATKQIFIPSG--- 318

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
                   E L     K V V++   D      ++L+   +  N+D   R  ++ ++G N
Sbjct: 319 --------ERLGDIVFKAVDVKKGFGD------RLLV---ENLNFDLP-RGGIVGIIGAN 360

Query: 121 GVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQ 157
           G GKTT+   L+ +   D+G    L  G+T + + +DQ
Sbjct: 361 GAGKTTLFRMLTGQDKPDSG---ELIVGETVKVSYVDQ 395


>gi|121594946|ref|YP_986842.1| putative ABC transporter ATP-binding protein [Acidovorax sp. JS42]
 gi|120607026|gb|ABM42766.1| ABC transporter related protein [Acidovorax sp. JS42]
          Length = 579

 Score = 35.8 bits (81), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 10/112 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTS 166
           ++ ++G NG GK+T+   ++ K+  D+G       V +A  D  R A  D   +W D + 
Sbjct: 376 IVGIIGPNGAGKSTLFKLIAGKEQPDSGTVEIGQTVKMAFVDQHRDALADDKTVWEDISG 435

Query: 167 ADFVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
              + +    ++ S A A  +    Q Q KKV  L     GRLH    L+ G
Sbjct: 436 GLDIINVGKFQMASRAYAGRFNFNGQDQQKKVGNLSGGERGRLHLAKTLIQG 487


>gi|306815411|ref|ZP_07449560.1| putative ABC transporter ATP-binding protein [Escherichia coli
           NC101]
 gi|305851073|gb|EFM51528.1| putative ABC transporter ATP-binding protein [Escherichia coli
           NC101]
          Length = 555

 Score = 35.8 bits (81), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+ TKG  S          ++ S+       R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GPR 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E          VS  R  Y    LI  +   + K           ++ ++G NG
Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDSLSFSIPKG---------AIVGIIGPNG 359

Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            GK+T+   +S ++  D+G       V LA+ D FR +  +   +W +  S      +IG
Sbjct: 360 AGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVW-EEVSGGLDIMKIG 418

Query: 176 -SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|218247141|ref|YP_002372512.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8801]
 gi|218167619|gb|ACK66356.1| cobalamin synthesis protein P47K [Cyanothece sp. PCC 8801]
          Length = 378

 Score = 35.8 bits (81), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 15/134 (11%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+  P      H   V ++ G  G GKTT++  +       GLK  +   + F    ID 
Sbjct: 13  PMDTP-----KHGLPVTIITGFLGSGKTTLLNHILSNQE--GLKTAVLVNE-FGEIGIDN 64

Query: 158 LKIWAD-----RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
             I          S   VC  I  D     Y+  ++ +  KVD L+++T G      + +
Sbjct: 65  ELIVTTSDNMVELSNGCVCCTINEDLIQAVYKVLERPE--KVDYLVVETTGIADPLPVAL 122

Query: 213 AGIGKMIRVLKRLD 226
             +G  +R + RLD
Sbjct: 123 TFLGTELRDMTRLD 136


>gi|168262364|ref|ZP_02684337.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205348804|gb|EDZ35435.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 555

 Score = 35.8 bits (81), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 38/225 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+  KG  S   K K  +        ++   R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGAKGRQS---KGKARLARFEELNSVEYQKRNETNELFIPP--GPR 318

Query: 62  VAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  K++E   L K Y   V +  + + V                     +  ++ ++G N
Sbjct: 319 LGDKVIEVSNLRKSYGDRVLIDDLSFSVP--------------------KGAIVGIIGPN 358

Query: 121 GVGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           G GK+T+   +S ++  D+G       V LA+ D FR A  +   +W +  S      +I
Sbjct: 359 GAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVW-EEVSGGLDIMKI 417

Query: 175 G-SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAG 214
           G ++  + AY     FK   Q K+V  L     GRLH   +L  G
Sbjct: 418 GNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG 462


>gi|301167756|emb|CBW27340.1| putative ATP-binding component of ABC transporter [Bacteriovorax
           marinus SJ]
          Length = 561

 Score = 35.8 bits (81), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 93/229 (40%), Gaps = 51/229 (22%)

Query: 4   QKVASESLSWIRKLTKGF-ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           QK   E L WIR   K   A +  ++K       SS+      R E  DL I +  G  +
Sbjct: 272 QKAMKEELEWIRSSPKARQAKSKARIKSYDERFKSSQE----KRNETNDLFIPT--GPRL 325

Query: 63  AQKIVEELLTKRYAKDVSV---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVG 118
              ++E       A++VS     +VLYD                N +F   P  V+ ++G
Sbjct: 326 GNSVIE-------AENVSKAFDDKVLYD----------------NLNFQLPPGGVVGIIG 362

Query: 119 VNGVGKTTVIGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLK-IWADRTSADFVC---- 171
            NG GKTT+   ++  ++ +    KV    GDT + + +DQ + +  ++T  + V     
Sbjct: 363 ANGAGKTTLFRMITGEQEPTSGTFKV----GDTVKLSYVDQGRALDPEKTIYETVSGGTE 418

Query: 172 ------SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
                  E+ S A    +    + Q KKV  L      R+H  + L+ G
Sbjct: 419 FIKLGEQEVNSRAYIAKFNFSGEDQKKKVSELSGGERNRVHLAATLLTG 467


>gi|332519260|ref|ZP_08395727.1| DNA repair protein RadA [Lacinutrix algicola 5H-3-7-4]
 gi|332045108|gb|EGI81301.1| DNA repair protein RadA [Lacinutrix algicola 5H-3-7-4]
          Length = 452

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 9/96 (9%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+ G  G+GK+T++ ++S K+     K +  +G+  +     Q+K+ A+R + D     I
Sbjct: 95  LLGGEPGIGKSTLLLQISLKLP---YKTLYVSGEESQK----QIKMRAERINPDNESCYI 147

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
            ++        FKQ +A + D++IID+   LH++ I
Sbjct: 148 LTETKT--QNIFKQIEALEPDIVIIDSIQTLHSDYI 181


>gi|294054330|ref|YP_003547988.1| LAO/AO transport system ATPase [Coraliomargarita akajimensis DSM
           45221]
 gi|293613663|gb|ADE53818.1| LAO/AO transport system ATPase [Coraliomargarita akajimensis DSM
           45221]
          Length = 322

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 21/125 (16%)

Query: 98  PLSKPFNWDFSHR--PHV-----ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           P   P+  +   R  PH      + + GV G GK+T I  L   +   G KV + A D  
Sbjct: 34  PKHAPYAKELMKRLLPHTGGSIRVGLTGVPGAGKSTTIEALGMYLCKEGKKVAVLAVDP- 92

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGS------------DAAALAYEAFKQAQAKKVDVLI 198
            S+++    I  D+T  + +C E  +              AA   EA    +A   DV+I
Sbjct: 93  -SSSVHGGSILGDKTRMEDLCREENAFIRPSPSGNSLGGVAARTREALLICEAAGYDVVI 151

Query: 199 IDTAG 203
           ++T G
Sbjct: 152 VETVG 156


>gi|270293594|ref|ZP_06199796.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275061|gb|EFA20921.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 491

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 97/240 (40%), Gaps = 46/240 (19%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           Q  ++    ++   L+ L++P   DF    H I +VG NG GK+ ++  L++K      +
Sbjct: 4   QHTIHIAGGVVRNPLVRLTEPVTLDFLAGEH-IAIVGPNGAGKSLLVDMLTEKYPLRDGE 62

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           +      +    A D +K  A R +        GS  A   Y+    A  ++   L+ + 
Sbjct: 63  LTYDFSPSLTKTAYDNIKYIAFRDT-------YGSADANYYYQQRWNAHDQEDAPLVREV 115

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV------ 255
            G + ++ +L   + ++  +   LD        +++  ++G+  LR+ ++  A+      
Sbjct: 116 LGEVKDD-VLRRQLFELFSIEPMLDK-------KIILLSSGE--LRKFQLTKALLTVPRI 165

Query: 256 -----------AGTTGLIMTKMDGTARGGGL-----------IPIVVTHKIPVYFLGVGE 293
                      A T  L+   +D   R G L           IP  VTH +PV  + VGE
Sbjct: 166 LIMDNPFIGLDAPTRELLFNLLDRLTRLGELQIVLVLSMLDDIPSFVTHVVPVEEMKVGE 225


>gi|254168450|ref|ZP_04875294.1| hypothetical protein ABOONEI_2618 [Aciduliprofundum boonei T469]
 gi|197622505|gb|EDY35076.1| hypothetical protein ABOONEI_2618 [Aciduliprofundum boonei T469]
          Length = 633

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 25/34 (73%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           ++LV+G  G GKT VI K++K+ SD G +V++ +
Sbjct: 185 LLLVIGPPGTGKTRVIAKIAKEFSDRGERVLITS 218


>gi|26251284|ref|NP_757324.1| putative ABC transporter ATP-binding protein [Escherichia coli
           CFT073]
 gi|91214109|ref|YP_544095.1| putative ABC transporter ATP-binding protein [Escherichia coli
           UTI89]
 gi|110644830|ref|YP_672560.1| putative ABC transporter ATP-binding protein [Escherichia coli 536]
 gi|117626751|ref|YP_860074.1| putative ABC transporter ATP-binding protein [Escherichia coli APEC
           O1]
 gi|170683563|ref|YP_001746848.1| putative ABC transporter ATP-binding protein [Escherichia coli
           SMS-3-5]
 gi|191173202|ref|ZP_03034734.1| ABC transporter, ATP-binding protein [Escherichia coli F11]
 gi|218561624|ref|YP_002394537.1| ABC transporter ATP-binding protein [Escherichia coli S88]
 gi|218692781|ref|YP_002400993.1| putative ABC transporter ATP-binding protein [Escherichia coli
           ED1a]
 gi|331661026|ref|ZP_08361958.1| ABC transporter, ATP-binding protein YjiK [Escherichia coli TA206]
 gi|26111717|gb|AAN83898.1|AE016772_76 ABC transporter ATP-binding protein yjjK [Escherichia coli CFT073]
 gi|91075683|gb|ABE10564.1| ABC transporter ATP-binding protein YjjK [Escherichia coli UTI89]
 gi|110346422|gb|ABG72659.1| ABC transporter ATP-binding protein YjjK [Escherichia coli 536]
 gi|115515875|gb|ABJ03950.1| ABC transporter ATP-binding protein YjjK [Escherichia coli APEC O1]
 gi|170521281|gb|ACB19459.1| ABC transporter, ATP-binding protein [Escherichia coli SMS-3-5]
 gi|190906587|gb|EDV66194.1| ABC transporter, ATP-binding protein [Escherichia coli F11]
 gi|218368393|emb|CAR06213.1| fused putative transporter subunits of ABC superfamily: ATP-binding
           components [Escherichia coli S88]
 gi|218430345|emb|CAV18220.1| fused putative transporter subunits of ABC superfamily: ATP-binding
           components [Escherichia coli ED1a]
 gi|222036134|emb|CAP78879.1| Uncharacterized ABC transporter ATP-binding protein yjjK
           [Escherichia coli LF82]
 gi|294493398|gb|ADE92154.1| ABC transporter, ATP-binding protein [Escherichia coli IHE3034]
 gi|307556626|gb|ADN49401.1| ABC transporter ATP-binding protein YjjK [Escherichia coli ABU
           83972]
 gi|307629563|gb|ADN73867.1| putative ABC transporter ATP-binding protein [Escherichia coli
           UM146]
 gi|312949023|gb|ADR29850.1| putative ABC transporter ATP-binding protein [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|320195345|gb|EFW69973.1| ABC transporter, ATP-binding protein [Escherichia coli WV_060327]
 gi|323950521|gb|EGB46399.1| ABC transporter [Escherichia coli H252]
 gi|323964765|gb|EGB60233.1| ABC transporter [Escherichia coli M863]
 gi|330909836|gb|EGH38346.1| ABC transporter, ATP-binding protein [Escherichia coli AA86]
 gi|331052068|gb|EGI24107.1| ABC transporter, ATP-binding protein YjiK [Escherichia coli TA206]
          Length = 555

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+ TKG  S          ++ S+       R E  +L I    G  
Sbjct: 264 ARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GPR 318

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E          VS  R  Y    LI  +   + K           ++ ++G NG
Sbjct: 319 LGDKVLE----------VSNLRKSYGDRLLIDSLSFSIPKG---------AIVGIIGPNG 359

Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            GK+T+   +S ++  D+G       V LA+ D FR +  +   +W +  S      +IG
Sbjct: 360 AGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVW-EEVSGGLDIMKIG 418

Query: 176 -SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 419 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 466


>gi|83592764|ref|YP_426516.1| cobyrinic acid a,c-diamide synthase [Rhodospirillum rubrum ATCC
           11170]
 gi|6226573|sp|P31897|COOC_RHORU RecName: Full=Carbon monoxide dehydrogenase accessory protein CooC
 gi|1498749|gb|AAC45124.1| CooC [Rhodospirillum rubrum]
 gi|83575678|gb|ABC22229.1| Cobyrinic acid a,c-diamide synthase [Rhodospirillum rubrum ATCC
           11170]
          Length = 263

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           I V G  GVGK+T++G L++ +SD G +VM    D   + A   + + A+R SA
Sbjct: 3   IAVTGKGGVGKSTIVGMLARALSDEGWRVMAIDADPDANLA-SAIGVPAERLSA 55


>gi|323190330|gb|EFZ75606.1| ABC transporter family protein [Escherichia coli RN587/1]
          Length = 548

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 37/229 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +K   + L W+R+ TKG  S          ++ S+       R E  +L I    G  
Sbjct: 257 ARRKSIEKELEWVRQGTKGRQSKGKARLARFEELNSTEYQK---RNETNELFIPP--GPR 311

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  K++E          VS  R  Y    LI  +   + K           ++ ++G NG
Sbjct: 312 LGDKVLE----------VSNLRKSYGDRLLIDSLSFSIPKG---------AIVGIIGPNG 352

Query: 122 VGKTTVIGKLS-KKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            GK+T+   +S ++  D+G       V LA+ D FR +  +   +W +  S      +IG
Sbjct: 353 AGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFRDSMDNSKTVW-EEVSGGLDIMKIG 411

Query: 176 -SDAAALAYEA---FKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            ++  + AY     FK   Q K+V  L     GRLH   +L  G G M+
Sbjct: 412 NTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVG-GNML 459


>gi|159028098|emb|CAO87175.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 343

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 15/134 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF-- 169
           V ++ G  G GKTT++  +    +  GLKV +   + F    ID QL +  D    +   
Sbjct: 22  VTIITGFLGSGKTTLLNHILD--NKEGLKVAVLVNE-FGDINIDSQLLVSIDEDMVELSN 78

Query: 170 --VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +C  I        Y+  ++     VD LII+T G      I++  +   ++ L RLD 
Sbjct: 79  GCICCTINDSLIETVYQVLEKEIP--VDYLIIETTGLADPLPIILTFLATELKYLTRLD- 135

Query: 228 HAPHSVLQVLDATT 241
               S++ ++D+ T
Sbjct: 136 ----SIITLVDSET 145


Searching..................................................done


Results from round 2




>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040386|gb|ACT57182.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 321

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 321/321 (100%), Positives = 321/321 (100%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV
Sbjct: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN
Sbjct: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA
Sbjct: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT
Sbjct: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP
Sbjct: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300

Query: 301 FVAKDFSAVITGCLDYGEEKI 321
           FVAKDFSAVITGCLDYGEEKI
Sbjct: 301 FVAKDFSAVITGCLDYGEEKI 321


>gi|315121874|ref|YP_004062363.1| cell division protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495276|gb|ADR51875.1| cell division protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 315

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 254/314 (80%), Positives = 280/314 (89%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           S+S SWI+K  KGFASTSLKLKEGI  +ISS+RLDD VR+ELEDLLIR+DIG+  AQ+IV
Sbjct: 2   SKSFSWIQKKAKGFASTSLKLKEGIAAVISSKRLDDSVRDELEDLLIRADIGLEAAQEIV 61

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            +L+ KRY KDVS+Q VL DVSE I+K+LMP+SK F+ DFSHRPHVILVVGVNG GKTT 
Sbjct: 62  GDLVAKRYNKDVSIQCVLQDVSEKIYKILMPISKSFDLDFSHRPHVILVVGVNGAGKTTA 121

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKLSKKMSD+GLK+MLAAGDTFRSAA+DQLKIWADRTS+DFV SEIGSDAAALAYEAF+
Sbjct: 122 IGKLSKKMSDSGLKIMLAAGDTFRSAAVDQLKIWADRTSSDFVGSEIGSDAAALAYEAFR 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QAQAK VDVLIIDTAGRLHNNS LMAGIGKMIRVLKRLDP APHSVLQVLDAT GQNALR
Sbjct: 182 QAQAKNVDVLIIDTAGRLHNNSALMAGIGKMIRVLKRLDPDAPHSVLQVLDATVGQNALR 241

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QVE+F +VAGTTGLIMTK+DGTARGG L+ I + HKIPVYFLG GEGINDLEPFVAKDFS
Sbjct: 242 QVELFQSVAGTTGLIMTKLDGTARGGILVSIAIKHKIPVYFLGTGEGINDLEPFVAKDFS 301

Query: 308 AVITGCLDYGEEKI 321
             ITG  DY E+KI
Sbjct: 302 TAITGYFDYNEKKI 315


>gi|227823743|ref|YP_002827716.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           fredii NGR234]
 gi|227342745|gb|ACP26963.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           fredii NGR234]
          Length = 532

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 184/310 (59%), Positives = 235/310 (75%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
             +   LSW ++L  G A TS +L   I  + + R+LD+   E+LEDLLI++D+GV  A 
Sbjct: 221 PASQPKLSWYQRLRHGLARTSSQLTGQIASLFTKRKLDEATLEDLEDLLIQADLGVETAM 280

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +I + L ++RY KDV+ + V   ++  I K+L P+++P   D S +PHVILVVGVNG GK
Sbjct: 281 RITDTLASERYGKDVTGEDVSRIMAGEIAKVLAPVARPLELDLSQKPHVILVVGVNGTGK 340

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT +D V S++G+DAA LAYE
Sbjct: 341 TTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTKSDIVASKLGADAAGLAYE 400

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           AF+ A+ KK DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQN
Sbjct: 401 AFQLAREKKSDVLIIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQN 460

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL+QVE+F  VAG +GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEGI+DLEPF AK
Sbjct: 461 ALQQVEIFRNVAGVSGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGIDDLEPFEAK 520

Query: 305 DFSAVITGCL 314
           DF+  I G  
Sbjct: 521 DFAEAIAGVG 530


>gi|86359533|ref|YP_471425.1| cell division protein [Rhizobium etli CFN 42]
 gi|86283635|gb|ABC92698.1| cell division protein [Rhizobium etli CFN 42]
          Length = 522

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 185/314 (58%), Positives = 242/314 (77%), Gaps = 1/314 (0%)

Query: 1   MSNQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           +  Q +A +  LSW ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+G
Sbjct: 207 IEPQPIAPQPKLSWFQRLRNGLARTSSQLTNQITALFTKRKLDDETLQDLEDLLIQADLG 266

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           V  A ++ + L ++RY KDV+ + V   ++  I K+L P++KP   D SH+PHVILVVGV
Sbjct: 267 VETALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGV 326

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA
Sbjct: 327 NGTGKTTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAA 386

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            LAY+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL RLDP APH+VLQ LDA
Sbjct: 387 GLAYDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGRLDPDAPHTVLQTLDA 446

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGE ++DLE
Sbjct: 447 TTGQNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEAVDDLE 506

Query: 300 PFVAKDFSAVITGC 313
           PF A+DF+  I G 
Sbjct: 507 PFEAEDFARAIAGL 520


>gi|118591327|ref|ZP_01548725.1| GTP-binding signal recognition particle (SRP54)
           G-domain:ATP/GTP-binding site motif A (P-loop):AAA
           [Stappia aggregata IAM 12614]
 gi|118435999|gb|EAV42642.1| GTP-binding signal recognition particle (SRP54)
           G-domain:ATP/GTP-binding site motif A (P-loop):AAA
           [Stappia aggregata IAM 12614]
          Length = 474

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 165/304 (54%), Positives = 225/304 (74%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LSW ++L  G + +S  L EGI+ I + R+LD  + EELED+LI++D+GV  A  I + 
Sbjct: 170 KLSWFQRLKNGLSRSSASLTEGISSIFTKRKLDASMLEELEDILIQADLGVDTAMAITDR 229

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L   RY K++S + V   ++E + K+L P+++P + D   +PHV+L+VGVNG GKTT IG
Sbjct: 230 LSDGRYNKEISPEEVRAILAEEVEKVLAPVARPLDLDTGKKPHVVLMVGVNGTGKTTTIG 289

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KLS+K+   G  VMLAAGDTFR+AA++QLKIW +RT A+ +  + G+DAA LAY+A K+A
Sbjct: 290 KLSQKLRSEGKTVMLAAGDTFRAAAVEQLKIWGERTGAEVIARDTGADAAGLAYDAMKEA 349

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +AK VDVL++DTAGRL N + LM  + K+IRV+K+ DP APH+VL  LDATTGQNAL QV
Sbjct: 350 KAKGVDVLLVDTAGRLQNKAELMDELEKVIRVIKKHDPEAPHTVLLTLDATTGQNALNQV 409

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG TGL+MTK+DGTARGG L+ I   H +PV+F+GVGEG+ DLEPF A++F++ 
Sbjct: 410 EIFGKVAGVTGLVMTKLDGTARGGILVAIAAKHAMPVHFIGVGEGVADLEPFSAREFASA 469

Query: 310 ITGC 313
           I G 
Sbjct: 470 IAGM 473


>gi|327190191|gb|EGE57296.1| cell division protein [Rhizobium etli CNPAF512]
          Length = 524

 Score =  351 bits (901), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 184/314 (58%), Positives = 242/314 (77%), Gaps = 1/314 (0%)

Query: 1   MSNQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           +  Q +A +  LSW ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+G
Sbjct: 209 VEPQPIAPQPKLSWFQRLRNGLARTSSQLTNQITALFTKRKLDDETLQDLEDLLIQADLG 268

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           V  A ++ + L ++RY KDV+ + V   ++  I K+L P++K    D SH+PHVILVVGV
Sbjct: 269 VETALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKSLQLDLSHKPHVILVVGV 328

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA
Sbjct: 329 NGTGKTTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAA 388

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            LAY+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDA
Sbjct: 389 GLAYDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDA 448

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLE
Sbjct: 449 TTGQNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLE 508

Query: 300 PFVAKDFSAVITGC 313
           PF A+DF+  I G 
Sbjct: 509 PFEAEDFAHAIAGL 522


>gi|209551317|ref|YP_002283234.1| signal recognition particle-docking protein FtsY [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209537073|gb|ACI57008.1| signal recognition particle-docking protein FtsY [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 528

 Score =  351 bits (901), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 182/308 (59%), Positives = 238/308 (77%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V    LSW ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+GV  A +
Sbjct: 219 VPQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETALR 278

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + + L ++RY KDV+ + V   ++  I K+L P++KP   D SH+PHVILVVGVNG GKT
Sbjct: 279 VTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKT 338

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++F+ +++G+DAA LAY+A
Sbjct: 339 TTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFIGTKLGADAAGLAYDA 398

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           F+QA+A+K DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNA
Sbjct: 399 FEQAKARKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNA 458

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG+ DLEPF A+D
Sbjct: 459 LSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVEDLEPFEAED 518

Query: 306 FSAVITGC 313
           F+  I G 
Sbjct: 519 FAHAIAGL 526


>gi|237802351|ref|ZP_04590812.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331025208|gb|EGI05264.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 514

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 194/312 (62%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60
             Q+  +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV
Sbjct: 197 PAQESEAGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGV 256

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
                I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGV
Sbjct: 257 EATSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHKPFVILVVGV 316

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A
Sbjct: 317 NGAGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSA 376

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA
Sbjct: 377 SVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDA 436

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL 
Sbjct: 437 GTGQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLR 496

Query: 300 PFVAKDFSAVIT 311
            F A+ F   + 
Sbjct: 497 TFEAEPFVQALF 508


>gi|241206753|ref|YP_002977849.1| signal recognition particle-docking protein FtsY [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860643|gb|ACS58310.1| signal recognition particle-docking protein FtsY [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 533

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 183/307 (59%), Positives = 237/307 (77%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
              LSW ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+GV  A ++ 
Sbjct: 226 QPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETAMRVT 285

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + L ++RY KDV+ + V   ++  I K+L P++KP   D SH+PHVILVVGVNG GKTT 
Sbjct: 286 DTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKTTT 345

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWADRT+++F+ +++G+DAA LAY+AF+
Sbjct: 346 IGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWADRTNSEFIGTKLGADAAGLAYDAFE 405

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL 
Sbjct: 406 QAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALS 465

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG+ DLEPF A+DF+
Sbjct: 466 QVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVEDLEPFEAEDFA 525

Query: 308 AVITGCL 314
             I G  
Sbjct: 526 HAIAGLG 532


>gi|116254270|ref|YP_770108.1| cell division protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258918|emb|CAK10027.1| putative SRP receptor [Rhizobium leguminosarum bv. viciae 3841]
          Length = 531

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 182/307 (59%), Positives = 236/307 (76%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
              LSW ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+GV  A ++ 
Sbjct: 224 QPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETAMRVT 283

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + L ++RY KDV+ + V   ++  I K+L P+++P   D SH+PHVILVVGVNG GKTT 
Sbjct: 284 DTLASERYGKDVTGEDVSRIMASEIAKVLKPVARPLQLDLSHKPHVILVVGVNGTGKTTT 343

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWADRT ++F+ +++G+DAA LAY+AF+
Sbjct: 344 IGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWADRTKSEFIGTKLGADAAGLAYDAFE 403

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL 
Sbjct: 404 QAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALS 463

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG+ DLEPF A+DF+
Sbjct: 464 QVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVEDLEPFEAEDFA 523

Query: 308 AVITGCL 314
             I G  
Sbjct: 524 HAIAGLG 530


>gi|190893800|ref|YP_001980342.1| cell division protein [Rhizobium etli CIAT 652]
 gi|190699079|gb|ACE93164.1| cell division protein [Rhizobium etli CIAT 652]
          Length = 520

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 184/314 (58%), Positives = 243/314 (77%), Gaps = 1/314 (0%)

Query: 1   MSNQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           +  Q +A +  LSW ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+G
Sbjct: 205 VEPQPIAPQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLG 264

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           V  A ++ + L ++RY KDV+ + V   ++  I K+L P++KP   D SH+PHVILVVGV
Sbjct: 265 VETALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGV 324

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+ K+S AGLKVM+AAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA
Sbjct: 325 NGTGKTTTIGKLAAKLSGAGLKVMVAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAA 384

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            LAY+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDA
Sbjct: 385 GLAYDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDA 444

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLE
Sbjct: 445 TTGQNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLE 504

Query: 300 PFVAKDFSAVITGC 313
           PF A+DF+  I G 
Sbjct: 505 PFEAEDFAHAIAGL 518


>gi|254504835|ref|ZP_05116986.1| signal recognition particle-docking protein FtsY, putative
           [Labrenzia alexandrii DFL-11]
 gi|222440906|gb|EEE47585.1| signal recognition particle-docking protein FtsY, putative
           [Labrenzia alexandrii DFL-11]
          Length = 465

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 169/308 (54%), Positives = 226/308 (73%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V  E LSW ++L KG + +S  L +GI+ I + R+LD  + EELED+LI++D+GV  A  
Sbjct: 157 VEEEKLSWFQRLKKGLSRSSSALTDGISSIFTKRKLDAAMLEELEDILIQADLGVDTAMA 216

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           I E L   RY K++S + V   +SE + K+L  +++P + +   +PHV+L+VGVNG GKT
Sbjct: 217 ITERLSDGRYDKEISPEEVREILSEEVEKVLASVAEPLDLNSGKKPHVVLMVGVNGTGKT 276

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKLSKK+ + G  VMLAAGDTFR+AA++QLKIW +RT A+ +  + G+DAA LA++A
Sbjct: 277 TTIGKLSKKLREEGKTVMLAAGDTFRAAAVEQLKIWGERTGAEVIARDTGADAAGLAFDA 336

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K+A  K+VDVL+IDTAGRL N + LM  + K+IRV+K+ DP APH+ L  LDATTGQNA
Sbjct: 337 MKEATEKQVDVLLIDTAGRLQNKAELMDELEKVIRVIKKHDPDAPHTCLLTLDATTGQNA 396

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QVE+F  VAG TGL+MTK+DGTARGG L+ I   H +PV+F+GVGEG+ DLEPF AKD
Sbjct: 397 LNQVEIFGKVAGVTGLVMTKLDGTARGGILVAIAAKHGLPVHFIGVGEGVEDLEPFSAKD 456

Query: 306 FSAVITGC 313
           FS+ I G 
Sbjct: 457 FSSAIAGL 464


>gi|15966990|ref|NP_387343.1| putative cell division protein [Sinorhizobium meliloti 1021]
 gi|307302458|ref|ZP_07582215.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           meliloti BL225C]
 gi|307316212|ref|ZP_07595656.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           meliloti AK83]
 gi|15076263|emb|CAC47816.1| Putative cell division protein [Sinorhizobium meliloti 1021]
 gi|306898052|gb|EFN28794.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           meliloti AK83]
 gi|306903128|gb|EFN33718.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           meliloti BL225C]
          Length = 548

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 181/308 (58%), Positives = 236/308 (76%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
                 L+W ++L  G A TS +L   I  + + R+LD+   ++LEDLLI++D+GV  A 
Sbjct: 237 PAPQAKLNWYQRLRLGLARTSSQLTGQIASLFTKRKLDEATLQDLEDLLIQADLGVETAM 296

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +I + L ++RY KDVS + V   ++  I K+L P+++P   D SH+PHVILVVGVNG GK
Sbjct: 297 RITDTLASERYGKDVSGEDVSRIMAGEITKVLAPVARPLELDLSHKPHVILVVGVNGTGK 356

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT ++ V S++G+DAA LAYE
Sbjct: 357 TTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTKSEIVSSKLGADAAGLAYE 416

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           AF++A+ +K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQN
Sbjct: 417 AFQRAREQKADVLIIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQN 476

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL+QVE+F  VAG +GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEGI+DLEPF AK
Sbjct: 477 ALQQVEIFRNVAGVSGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGIDDLEPFEAK 536

Query: 305 DFSAVITG 312
           +F+  I G
Sbjct: 537 EFAEAIAG 544


>gi|150398285|ref|YP_001328752.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           medicae WSM419]
 gi|150029800|gb|ABR61917.1| signal recognition particle-docking protein FtsY [Sinorhizobium
           medicae WSM419]
          Length = 520

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 181/308 (58%), Positives = 237/308 (76%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
             A   L+W ++L  G A TS +L   I  + + R+LD+   ++LEDLLI++D+GV  A 
Sbjct: 209 PAAQPKLNWYQRLRLGLARTSSQLTGQIASLFTKRKLDEATLQDLEDLLIQADLGVETAM 268

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +I + L ++RY KDVS + V   ++  I K+L P++KP   D +H+PHVILVVGVNG GK
Sbjct: 269 RITDALASERYGKDVSGEDVSRIMAGEITKVLAPVAKPLELDLNHKPHVILVVGVNGTGK 328

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K+S AGLKVM+AAGDTFR+AAI+QLKIWA+RT ++ V S++G+DAA LAYE
Sbjct: 329 TTTIGKLAAKLSGAGLKVMMAAGDTFRAAAIEQLKIWAERTRSEIVSSKLGADAAGLAYE 388

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           AF++A+ +K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQN
Sbjct: 389 AFQRAREQKADVLIIDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQN 448

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL+QVE+F  VAG +GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF AK
Sbjct: 449 ALQQVEIFRNVAGVSGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPFEAK 508

Query: 305 DFSAVITG 312
           DF+  I G
Sbjct: 509 DFAEAIAG 516


>gi|222087518|ref|YP_002546055.1| cell division protein [Agrobacterium radiobacter K84]
 gi|221724966|gb|ACM28122.1| cell division protein [Agrobacterium radiobacter K84]
          Length = 505

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 178/312 (57%), Positives = 238/312 (76%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
              +   + LSW ++L  G A TS +L   I  + + R+LDD   ++LEDLLI++D+GV 
Sbjct: 188 PAPEAPKQKLSWFQRLRAGLARTSSQLTGQIAALFTKRKLDDQTLQDLEDLLIQADLGVE 247

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            A ++ + L ++RY KDV+ + V   +++ I K+L P++KP   D SH+PHVIL+VGVNG
Sbjct: 248 TAMRVTDTLASERYGKDVTGEDVSRIMAQEIAKVLKPVAKPLQLDLSHKPHVILIVGVNG 307

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+ K+S AGLKVM+AAGDTFR+AAI+QLKIWADRT ++F+ +++G+DAA L
Sbjct: 308 TGKTTTIGKLAAKLSGAGLKVMVAAGDTFRAAAIEQLKIWADRTKSEFIGTKLGADAAGL 367

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++AF+QA+A K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATT
Sbjct: 368 AFDAFQQAKANKSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPDAPHTVLQTLDATT 427

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF
Sbjct: 428 GQNALNQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPF 487

Query: 302 VAKDFSAVITGC 313
            A++F+  I G 
Sbjct: 488 EAEEFAQAIAGI 499


>gi|307943541|ref|ZP_07658885.1| signal recognition particle-docking protein FtsY [Roseibium sp.
           TrichSKD4]
 gi|307773171|gb|EFO32388.1| signal recognition particle-docking protein FtsY [Roseibium sp.
           TrichSKD4]
          Length = 371

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 170/313 (54%), Positives = 232/313 (74%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +++   A   LSW +KL KG + +S  L +GI+ I + R+LD  + EELED+LI++D+GV
Sbjct: 58  VADSSEAEPKLSWFQKLKKGLSRSSSALTDGISSIFTKRKLDASMLEELEDILIQADLGV 117

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A  I + L   RY K+++   V   +SE + K+L P+++P N +   +PHV+L+VGVN
Sbjct: 118 DTAMAITDRLSDGRYDKEIAPDEVRAILSEEVEKVLAPVAQPLNLETGKKPHVVLMVGVN 177

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKLS+K++  G KVMLAAGDTFR+AA++QLKIW +RT A+ +  + G+DAA 
Sbjct: 178 GTGKTTTIGKLSQKLAAEGKKVMLAAGDTFRAAAVEQLKIWGERTGAEVIARDTGADAAG 237

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++A K+A AK VDVL+IDTAGRL N + LM  + K+IRV+K+ DP APH+VL  LDAT
Sbjct: 238 LAFDAMKEAMAKDVDVLLIDTAGRLQNKAELMDELEKVIRVIKKHDPEAPHTVLLTLDAT 297

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QVE+F  VAG TGL+MTK+DGTARGG L+ I   H++PV+F+GVGEG++DLEP
Sbjct: 298 TGQNALNQVEIFGKVAGVTGLVMTKLDGTARGGILVAIAAKHQMPVHFIGVGEGVDDLEP 357

Query: 301 FVAKDFSAVITGC 313
           F AKDF++ I G 
Sbjct: 358 FSAKDFASAIAGL 370


>gi|153008260|ref|YP_001369475.1| signal recognition particle-docking protein FtsY [Ochrobactrum
           anthropi ATCC 49188]
 gi|151560148|gb|ABS13646.1| signal recognition particle-docking protein FtsY [Ochrobactrum
           anthropi ATCC 49188]
          Length = 494

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 168/309 (54%), Positives = 224/309 (72%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +      LSW  +L +G   +S  L E I  I + R+LDD   ++LED+LI++D+G+  A
Sbjct: 184 EAAPQPKLSWFERLRRGLLRSSNSLSESIGGIFTKRKLDDDTLQDLEDVLIQADLGLETA 243

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++ + L + RY KDV+ + V   +   I K+L P++KP   D SH+PHVILVVGVNG G
Sbjct: 244 MRVTDALASGRYGKDVTGEEVRTIMGAEIEKVLGPVAKPLELDLSHKPHVILVVGVNGTG 303

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY
Sbjct: 304 KTTTIGKLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAY 363

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A+++A+    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQ
Sbjct: 364 DAWEKAKEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQ 423

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QVE+F  +AG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEG++DLEPF A
Sbjct: 424 NALNQVEIFKNIAGVNGLVMTKLDGTARGGILVAISAKHKLPIYFIGVGEGVDDLEPFAA 483

Query: 304 KDFSAVITG 312
           KDF+  I G
Sbjct: 484 KDFARAIAG 492


>gi|319780718|ref|YP_004140194.1| signal recognition particle-docking protein FtsY [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317166606|gb|ADV10144.1| signal recognition particle-docking protein FtsY [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 601

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 164/306 (53%), Positives = 222/306 (72%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +   SW +++  G A +S +L   I  + + R+LD+   ++LED+LIR+D+G+  A ++
Sbjct: 294 PAPRRSWFQRMKDGLARSSKELTGNIAGVFTKRKLDEETLQDLEDVLIRADLGMETALRV 353

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            + L   RY KDVS   V   ++  + K+L  ++ P   D SH+PHVILVVGVNG GKTT
Sbjct: 354 TDALAASRYGKDVSDTEVRAIMAAEVEKVLTHVAMPLELDLSHKPHVILVVGVNGTGKTT 413

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ K++D GL VMLAAGDTFR+AAI+QLKIW +RT +  + S++G+DAA LAY+AF
Sbjct: 414 TIGKLAAKLTDGGLSVMLAAGDTFRAAAIEQLKIWGERTKSPVIASKLGADAAGLAYDAF 473

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+    DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ +DATTGQNAL
Sbjct: 474 ERAKEAGSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPEAPHTVLQTVDATTGQNAL 533

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVE+F  VAG  GL+MTK+DGTARGG L+ I   HK+PVYF+GVGE ++DLEPF A +F
Sbjct: 534 NQVEIFRNVAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEQVDDLEPFSASEF 593

Query: 307 SAVITG 312
           +  I G
Sbjct: 594 ARAIAG 599


>gi|325294064|ref|YP_004279928.1| cell division particle [Agrobacterium sp. H13-3]
 gi|325061917|gb|ADY65608.1| cell division particle [Agrobacterium sp. H13-3]
          Length = 476

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 182/308 (59%), Positives = 237/308 (76%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +     LSW ++L  G A TS +L   I+ + + R+LD+   +ELEDLLI+SD+GV  A 
Sbjct: 168 EAPQPKLSWFQRLRAGLARTSSQLTTQISALFTKRKLDEDTLDELEDLLIQSDLGVETAM 227

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +I   L ++RY KDVS + V   ++  I K+L P++KP   D SH+PHVILVVGVNG GK
Sbjct: 228 RITGALSSERYGKDVSGEDVARIMAGEITKVLKPVAKPLELDLSHKPHVILVVGVNGTGK 287

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K+S +GLKVMLAAGDTFR+AAI+QLKIWADRT + F+ +++G+DA+ LAY+
Sbjct: 288 TTTIGKLASKLSGSGLKVMLAAGDTFRAAAIEQLKIWADRTGSQFIGTKLGADASGLAYD 347

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A++QA+A+K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQN
Sbjct: 348 AYEQARAQKSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQN 407

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QVE+F  VAG +GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF A+
Sbjct: 408 ALNQVEIFRNVAGVSGLIMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFEAE 467

Query: 305 DFSAVITG 312
           DF+  I G
Sbjct: 468 DFAKAIAG 475


>gi|320326373|gb|EFW82426.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 498

 Score =  346 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 193/310 (62%), Gaps = 2/310 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV  
Sbjct: 183 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 242

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I+  L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 243 TSVIINSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKVEHKPFVILVVGVNG 302

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 303 AGKTTTIGKLAKKLQLGGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 362

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 363 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 422

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 423 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 482

Query: 302 VAKDFSAVIT 311
            A+ F   + 
Sbjct: 483 EAEPFVQALF 492


>gi|320331637|gb|EFW87575.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330872359|gb|EGH06508.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 500

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 193/310 (62%), Gaps = 2/310 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV  
Sbjct: 185 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 244

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I+  L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 245 TSVIINSLTRKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKVEHKPFVILVVGVNG 304

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 305 AGKTTTIGKLAKKLQLGGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 364

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 365 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 424

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 425 GQNAINQAKQFNQTVMLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 484

Query: 302 VAKDFSAVIT 311
            A+ F   + 
Sbjct: 485 EAEPFVQALF 494


>gi|330957085|gb|EGH57345.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 506

 Score =  345 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 194/310 (62%), Gaps = 2/310 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV  
Sbjct: 191 QEPENAKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 250

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 251 TSVIIQSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 310

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 311 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 370

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 371 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 430

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 431 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 490

Query: 302 VAKDFSAVIT 311
            A+ F   + 
Sbjct: 491 EAEPFVQALF 500


>gi|239833060|ref|ZP_04681389.1| signal recognition particle-docking protein FtsY [Ochrobactrum
           intermedium LMG 3301]
 gi|239825327|gb|EEQ96895.1| signal recognition particle-docking protein FtsY [Ochrobactrum
           intermedium LMG 3301]
          Length = 490

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 168/309 (54%), Positives = 224/309 (72%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +      LSW  +L +G   +S  L E I  I + R+LDD   ++LED+LI++D+G+  A
Sbjct: 180 EAAPEPKLSWFERLRRGLLRSSNSLSESIGGIFTKRKLDDDTLQDLEDVLIQADLGLETA 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++ + L + RY KDV+ + V   +   I K+L P++KP   D SH+PHVILVVGVNG G
Sbjct: 240 MRVTDALASGRYGKDVTGEEVRTIMGAEIEKVLGPVAKPLELDLSHKPHVILVVGVNGTG 299

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY
Sbjct: 300 KTTTIGKLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAY 359

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A+++A+    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQ
Sbjct: 360 DAWEKAKEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQ 419

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QVE+F  +AG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEG++DLEPF A
Sbjct: 420 NALNQVEIFKNIAGVNGLVMTKLDGTARGGILVAISAKHKLPIYFIGVGEGVDDLEPFAA 479

Query: 304 KDFSAVITG 312
           KDF+  I G
Sbjct: 480 KDFARAIAG 488


>gi|328541784|ref|YP_004301893.1| Cell division transporter substrate-binding protein FtsY (Signal
           recognition particle receptor) [polymorphum gilvum
           SL003B-26A1]
 gi|326411536|gb|ADZ68599.1| Cell division transporter substrate-binding protein FtsY (Signal
           recognition particle receptor) [Polymorphum gilvum
           SL003B-26A1]
          Length = 419

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 166/312 (53%), Positives = 227/312 (72%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +    A+  LSW  +L +G + +S  L EGI+ I + RRLD  + +ELED+LI++D+GV 
Sbjct: 107 APDPAAAPRLSWFGRLKQGLSRSSSALTEGISSIFTKRRLDAAMLDELEDVLIQADLGVD 166

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            A  I E L   R+ K++S + V   ++E + K+L P+++P + D  HRPHV+L+VGVNG
Sbjct: 167 TATAITERLSVGRFDKEISAEEVRAVLAEEVEKVLAPVARPLDLDGEHRPHVVLMVGVNG 226

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKLS K++  G  VMLAAGDTFR+AA++QLKIW  RT A+ V  + G+DAA L
Sbjct: 227 TGKTTTIGKLSSKLAAEGRTVMLAAGDTFRAAAVEQLKIWGSRTGAEVVARDTGADAAGL 286

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A + A+ K VDVL++DTAGRL N + LMA + K+IRVL+++DP APH+VL  LDATT
Sbjct: 287 AFDALQAARDKGVDVLLVDTAGRLQNKAELMAELEKVIRVLRKIDPAAPHTVLLTLDATT 346

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL QVE+F   AG TGL+MTK+DGTARGG L+ I   + +PV+F+GVGEG++DLEPF
Sbjct: 347 GQNALSQVEIFGRTAGVTGLVMTKLDGTARGGILVAIAAKYGLPVHFIGVGEGVDDLEPF 406

Query: 302 VAKDFSAVITGC 313
            AKD++  I G 
Sbjct: 407 SAKDYARAIAGL 418


>gi|257482993|ref|ZP_05637034.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331011768|gb|EGH91824.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 496

 Score =  344 bits (884), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 194/310 (62%), Gaps = 2/310 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV  
Sbjct: 181 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 240

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 241 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 300

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 301 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 360

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 361 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 420

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 421 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 480

Query: 302 VAKDFSAVIT 311
            A+ F   + 
Sbjct: 481 EAEPFVQALF 490


>gi|71736424|ref|YP_276881.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71556977|gb|AAZ36188.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 500

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 193/310 (62%), Gaps = 2/310 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV  
Sbjct: 185 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 244

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I+  L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 245 TSVIINSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKVEHKPFVILVVGVNG 304

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 305 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 364

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 365 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 424

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 425 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 484

Query: 302 VAKDFSAVIT 311
            A+ F   + 
Sbjct: 485 EAEPFVQALF 494


>gi|289624656|ref|ZP_06457610.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|298485261|ref|ZP_07003354.1| signal recognition particle docking protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298160249|gb|EFI01277.1| signal recognition particle docking protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330871132|gb|EGH05841.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 496

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 194/310 (62%), Gaps = 2/310 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV  
Sbjct: 181 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 240

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 241 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 300

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 301 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 360

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 361 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 420

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 421 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 480

Query: 302 VAKDFSAVIT 311
            A+ F   + 
Sbjct: 481 EAEPFVQALF 490


>gi|289648495|ref|ZP_06479838.1| cell division transporter substrate-binding protein FtsY
           [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 494

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 194/310 (62%), Gaps = 2/310 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV  
Sbjct: 179 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 238

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 239 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 298

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 299 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 358

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 359 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 418

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 419 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 478

Query: 302 VAKDFSAVIT 311
            A+ F   + 
Sbjct: 479 EAEPFVQALF 488


>gi|302187229|ref|ZP_07263902.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. syringae 642]
          Length = 502

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 195/312 (62%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60
           +  ++ +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV
Sbjct: 185 ATPELETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGV 244

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
                I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGV
Sbjct: 245 EATSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHKPFVILVVGV 304

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A
Sbjct: 305 NGAGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSA 364

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA
Sbjct: 365 SVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDA 424

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL 
Sbjct: 425 GTGQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLR 484

Query: 300 PFVAKDFSAVIT 311
            F A+ F   + 
Sbjct: 485 TFEAEPFVQALF 496


>gi|330970953|gb|EGH71019.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 499

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 193/312 (61%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60
              +  +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV
Sbjct: 182 PAPEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGV 241

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
                I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGV
Sbjct: 242 EATSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGV 301

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A
Sbjct: 302 NGAGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSA 361

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA
Sbjct: 362 SVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDA 421

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL 
Sbjct: 422 GTGQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLR 481

Query: 300 PFVAKDFSAVIT 311
            F A+ F   + 
Sbjct: 482 TFEAEPFVQALF 493


>gi|15889947|ref|NP_355628.1| cell division particle [Agrobacterium tumefaciens str. C58]
 gi|15157906|gb|AAK88413.1| cell division particle [Agrobacterium tumefaciens str. C58]
          Length = 478

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 181/303 (59%), Positives = 236/303 (77%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            L+W ++L  G A TS +L   I+ + + R+LD+   +ELEDLLI+SD+GV  A +I   
Sbjct: 175 KLTWFQRLRAGLARTSSQLTTQISALFTKRKLDEDTLDELEDLLIQSDLGVETAMRITGA 234

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L ++RY KDVS + V   ++  I K+L P++KP   D SH+PHVILVVGVNG GKTT IG
Sbjct: 235 LSSERYGKDVSGEDVARIMAGEITKVLKPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 294

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K+S +GLKVMLAAGDTFR+AAI+QLKIWADRT ++F+ +++G+DAA LAY+A++QA
Sbjct: 295 KLAAKLSGSGLKVMLAAGDTFRAAAIEQLKIWADRTGSEFIGTKLGADAAGLAYDAYEQA 354

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNA+ QV
Sbjct: 355 RAQKSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNAMNQV 414

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG +GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG+ DLEPF A+DF+  
Sbjct: 415 EIFRNVAGVSGLIMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVEDLEPFEAEDFAKA 474

Query: 310 ITG 312
           I G
Sbjct: 475 IAG 477


>gi|330965439|gb|EGH65699.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 514

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 193/312 (61%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60
              +  +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV
Sbjct: 197 PAPEAEAGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGV 256

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
                I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGV
Sbjct: 257 EATSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGV 316

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A
Sbjct: 317 NGAGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSA 376

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA
Sbjct: 377 SVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDA 436

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL 
Sbjct: 437 GTGQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLR 496

Query: 300 PFVAKDFSAVIT 311
            F A+ F   + 
Sbjct: 497 TFEAEPFVQALF 508


>gi|66047975|ref|YP_237816.1| cell division transporter substrate-binding protein FtsY
           [Pseudomonas syringae pv. syringae B728a]
 gi|63258682|gb|AAY39778.1| Cell division transporter substrate-binding protein FtsY
           [Pseudomonas syringae pv. syringae B728a]
          Length = 505

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 193/312 (61%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60
              +  +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV
Sbjct: 188 PAPESETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGV 247

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
                I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGV
Sbjct: 248 EATSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGV 307

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A
Sbjct: 308 NGAGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSA 367

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA
Sbjct: 368 SVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDA 427

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL 
Sbjct: 428 GTGQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLR 487

Query: 300 PFVAKDFSAVIT 311
            F A+ F   + 
Sbjct: 488 TFEAEPFVQALF 499


>gi|28867657|ref|NP_790276.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850892|gb|AAO53971.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331014970|gb|EGH95026.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 513

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 191/304 (62%), Gaps = 2/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68
            + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV     I++
Sbjct: 204 KVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIK 263

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG GKTT 
Sbjct: 264 SLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTT 323

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A +
Sbjct: 324 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQ 383

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ 
Sbjct: 384 AAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAIN 443

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F 
Sbjct: 444 QAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPFV 503

Query: 308 AVIT 311
             + 
Sbjct: 504 QALF 507


>gi|148550186|ref|YP_001270288.1| signal recognition particle-docking protein FtsY [Pseudomonas
           putida F1]
 gi|148514244|gb|ABQ81104.1| signal recognition particle-docking protein FtsY [Pseudomonas
           putida F1]
          Length = 497

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 130/311 (41%), Positives = 192/311 (61%), Gaps = 2/311 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65
                 +  +L +G + TS  + EG+  +   ++ +DD + +E+E  L+ +D+GV     
Sbjct: 187 EQAKPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSA 246

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           IV+ L  K   K ++    LY  + E +  +L P+ +P      ++P+VILVVGVNG GK
Sbjct: 247 IVQNLTQKVARKQLADADALYKSLQEELAALLRPVEQPLKVQAQNKPYVILVVGVNGAGK 306

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++
Sbjct: 307 TTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFD 366

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+A+ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQN
Sbjct: 367 AVQAAKARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDVEAPHEVLLVLDAGTGQN 426

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q + F+     TGL +TK+DGTA+GG +  +     IP+ F+GVGEGI+DL  F A+
Sbjct: 427 AISQAKYFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAE 486

Query: 305 DFSAVITGCLD 315
            F   +    D
Sbjct: 487 PFVKALFAERD 497


>gi|307128891|ref|YP_003880907.1| signal recognition particle (SRP) receptor [Dickeya dadantii 3937]
 gi|306526420|gb|ADM96350.1| signal recognition particle (SRP) receptor [Dickeya dadantii 3937]
          Length = 446

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S ++       +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV
Sbjct: 132 VSQEQERPTKEGFFARLKRSLVKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGV 191

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI++ L      K +     L   +   +  +L  +  P + D S  P VIL+VGV
Sbjct: 192 ETTRKIIDRLTEHASRKQLKDAEALIALLKAEMSDILAKVDAPLDID-SKTPFVILMVGV 250

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A
Sbjct: 251 NGVGKTTTIGKLARQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSA 310

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD +APH V+  LDA
Sbjct: 311 SVIFDALQAARARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEVMLTLDA 370

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++F+   G +G+ +TK+DGTA+GG +  I     IP+ ++GVGE I+DL 
Sbjct: 371 STGQNAVSQAKLFNETVGLSGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGESIDDLR 430

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 431 PFKADDFIEALFARED 446


>gi|146284304|ref|YP_001174457.1| signal recognition particle receptor FtsY [Pseudomonas stutzeri
           A1501]
 gi|145572509|gb|ABP81615.1| signal recognition particle receptor FtsY [Pseudomonas stutzeri
           A1501]
          Length = 477

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 131/313 (41%), Positives = 195/313 (62%), Gaps = 2/313 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59
           ++    A   L +  +L +G + TS  + EG+  +   ++ +DD + +ELE  L+ +D+G
Sbjct: 159 VAATPEAPAKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLDELETRLLTADVG 218

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           V     I++ L  +   K+++    LY  + E +  +L P+ +P   D S RP+VILVVG
Sbjct: 219 VEATTAIMQNLTRRVSRKELADSGALYTALQEELVGLLKPVEQPLAIDASKRPYVILVVG 278

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+
Sbjct: 279 VNGVGKTTTIGKLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNGIPVIAQHTGADS 338

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLD
Sbjct: 339 ASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVMGKLDESAPHEVLLVLD 398

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQNA+ Q   F+     TGL +TK+DGTA+GG +  +      P+ ++GVGEGI+DL
Sbjct: 399 AGTGQNAINQTRQFNQAVELTGLALTKLDGTAKGGVIFALAKQFGTPIRYIGVGEGIDDL 458

Query: 299 EPFVAKDFSAVIT 311
             F A  F   + 
Sbjct: 459 RTFEADAFVKALF 471


>gi|330985908|gb|EGH84011.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 502

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 127/310 (40%), Positives = 193/310 (62%), Gaps = 2/310 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV  
Sbjct: 187 QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEA 246

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I++ L  K   K ++  + LY  +   +  ML P+ +P      H+  VILVVGVNG
Sbjct: 247 TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKSFVILVVGVNG 306

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 307 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 366

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 367 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 426

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F
Sbjct: 427 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTF 486

Query: 302 VAKDFSAVIT 311
            A+ F   + 
Sbjct: 487 EAEPFVQALF 496


>gi|26991787|ref|NP_747212.1| signal recognition particle-docking protein FtsY [Pseudomonas
           putida KT2440]
 gi|24986898|gb|AAN70676.1|AE016711_4 signal recognition particle receptor FtsY [Pseudomonas putida
           KT2440]
          Length = 494

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/311 (42%), Positives = 193/311 (62%), Gaps = 2/311 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65
                 +  +L +G + TS  + EG+  +   ++ +DD + +E+E  L+ +D+GV     
Sbjct: 184 EQAKPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSA 243

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           IV+ L  K   K ++    LY  + E +  +L P+ +P N    ++P+VILVVGVNG GK
Sbjct: 244 IVQNLTQKVARKQLADADALYKSLQEELAALLRPVEQPLNVQAQNKPYVILVVGVNGAGK 303

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++
Sbjct: 304 TTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFD 363

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+A+ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQN
Sbjct: 364 AVQAAKARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDVEAPHEVLLVLDAGTGQN 423

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q + F+     TGL +TK+DGTA+GG +  +     IP+ F+GVGEGI+DL  F A+
Sbjct: 424 AISQAKYFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAE 483

Query: 305 DFSAVITGCLD 315
            F   +    D
Sbjct: 484 PFVKALFAERD 494


>gi|167036150|ref|YP_001671381.1| signal recognition particle-docking protein FtsY [Pseudomonas
           putida GB-1]
 gi|166862638|gb|ABZ01046.1| signal recognition particle-docking protein FtsY [Pseudomonas
           putida GB-1]
          Length = 510

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 130/311 (41%), Positives = 192/311 (61%), Gaps = 2/311 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65
                 +  +L +G + TS  + EG+  +   ++ +DD + +E+E  L+ +D+GV     
Sbjct: 200 EQAKPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSA 259

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           IV+ L  K   K ++    LY  + E +  +L P+ +P      ++P+VILVVGVNG GK
Sbjct: 260 IVQNLTQKVARKQLADADALYKSLQEELAALLRPVEQPLKVQAQNKPYVILVVGVNGAGK 319

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++
Sbjct: 320 TTTIGKLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFD 379

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+A+ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQN
Sbjct: 380 AVQAAKARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQN 439

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q + F+     TGL +TK+DGTA+GG +  +     IP+ F+GVGEGI+DL  F A+
Sbjct: 440 AISQAKYFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAE 499

Query: 305 DFSAVITGCLD 315
            F   +    D
Sbjct: 500 PFVKALFAERD 510


>gi|330898961|gb|EGH30380.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 494

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 128/304 (42%), Positives = 191/304 (62%), Gaps = 2/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68
            + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV     I++
Sbjct: 185 KVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIK 244

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K   K ++  + LY  +   +  ML P+ +P      HRP VILVVGVNG GKTT 
Sbjct: 245 SLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHRPFVILVVGVNGAGKTTT 304

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A +
Sbjct: 305 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQ 364

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ 
Sbjct: 365 AAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAIN 424

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F 
Sbjct: 425 QAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPFV 484

Query: 308 AVIT 311
             + 
Sbjct: 485 QALF 488


>gi|218661335|ref|ZP_03517265.1| cell division protein [Rhizobium etli IE4771]
          Length = 335

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 184/308 (59%), Positives = 241/308 (78%), Gaps = 1/308 (0%)

Query: 1   MSNQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           +  Q +A +  LSW ++L  G A TSL+L   IT + + R+LDD   ++LEDLLI++D+G
Sbjct: 28  VEPQPIAPQAKLSWFQRLRNGLARTSLQLTNQITALFTKRKLDDETLQDLEDLLIQADLG 87

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           V  A ++ + L ++RY KDV+ + V   ++  I K+L P++KP   D SH+PHVILVVGV
Sbjct: 88  VETALRVTDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGV 147

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT ++FV +++G+DAA
Sbjct: 148 NGTGKTTTIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTKSEFVGTKLGADAA 207

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            LAY+AF+QA+AKK DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDA
Sbjct: 208 GLAYDAFEQAKAKKCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDA 267

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL QVE+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLE
Sbjct: 268 TTGQNALSQVEIFRNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLE 327

Query: 300 PFVAKDFS 307
           PF A+DF+
Sbjct: 328 PFEAEDFA 335


>gi|104779581|ref|YP_606079.1| cell division protein FtsY [Pseudomonas entomophila L48]
 gi|95108568|emb|CAK13262.1| cell division protein FtsY [Pseudomonas entomophila L48]
          Length = 524

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 129/304 (42%), Positives = 192/304 (63%), Gaps = 2/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68
              +  +L +G + TS  + EG+  +   ++ +DD + +E+E  L+ +D+GV     IV+
Sbjct: 215 KPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSTIVQ 274

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K   K ++    LY  + E +  +L P+ +P   +  ++P+VILVVGVNG GKTT 
Sbjct: 275 NLTQKVARKQLADADALYKSLQEELAALLRPVEQPLKIEAQNKPYVILVVGVNGAGKTTT 334

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A +
Sbjct: 335 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQ 394

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ 
Sbjct: 395 AAKARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAIS 454

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+     TGL +TK+DGTA+GG +  +     IP+ F+GVGEGI+DL  F A+ F 
Sbjct: 455 QAKYFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPFV 514

Query: 308 AVIT 311
             + 
Sbjct: 515 KALF 518


>gi|330874697|gb|EGH08846.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 516

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 126/304 (41%), Positives = 191/304 (62%), Gaps = 2/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68
            + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV     I++
Sbjct: 207 KVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIK 266

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K   K ++  + LY  +   +  +L P+ +P      H+P VILVVGVNG GKTT 
Sbjct: 267 SLTQKVARKQLTDAQALYTSLQAELAALLKPVEQPLVIKAEHKPFVILVVGVNGAGKTTT 326

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A +
Sbjct: 327 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQ 386

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ 
Sbjct: 387 AAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAIN 446

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F 
Sbjct: 447 QAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPFV 506

Query: 308 AVIT 311
             + 
Sbjct: 507 QALF 510


>gi|110635717|ref|YP_675925.1| signal recognition particle-docking protein FtsY [Mesorhizobium sp.
           BNC1]
 gi|110286701|gb|ABG64760.1| signal recognition particle-docking protein FtsY [Chelativorans sp.
           BNC1]
          Length = 500

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 167/307 (54%), Positives = 224/307 (72%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V      W ++L +G   +S +L++ I  I   R+LD+   ++LED+L+R+D+G+  A +
Sbjct: 192 VEEPRKPWFQRLREGLYRSSRELRDNIAGIFLKRKLDEDTLQDLEDVLLRADLGLETAMR 251

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + + L   RY KD++   V   ++E I K+L P++ P   D SH+PHVILVVGVNG GKT
Sbjct: 252 VTDALSVGRYGKDITGAEVQAVMAEEIEKVLKPVALPLELDLSHKPHVILVVGVNGTGKT 311

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K++  GL VMLAAGDTFR+AAI+QLKIW +RT +  + S +G+DAA LAYEA
Sbjct: 312 TTIGKLAAKLAQGGLNVMLAAGDTFRAAAIEQLKIWGERTGSAVISSRLGADAAGLAYEA 371

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           +++A+A   DVLIIDTAGRL N + LMA + K++RVL + DP APH+VLQ LDATTGQNA
Sbjct: 372 YEKAKAAGSDVLIIDTAGRLQNKAELMAELEKIVRVLGKHDPEAPHTVLQTLDATTGQNA 431

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QVE+F  VAG +GL+MTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF A D
Sbjct: 432 LNQVEIFRNVAGVSGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFSASD 491

Query: 306 FSAVITG 312
           F+  I G
Sbjct: 492 FAKAIAG 498


>gi|269140670|ref|YP_003297371.1| cell division protein [Edwardsiella tarda EIB202]
 gi|267986331|gb|ACY86160.1| cell division protein [Edwardsiella tarda EIB202]
 gi|304560455|gb|ADM43119.1| Signal recognition particle receptor protein FtsY [Edwardsiella
           tarda FL6-60]
          Length = 589

 Score =  338 bits (867), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 194/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + +ELE+ LI +D+GV   
Sbjct: 278 EQEKPVKEGFFARLKRSLVKTRQNLGSGFFGLFRGKKIDDDLFDELEEQLIVADVGVETT 337

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI++ L      K++     LY  + E + ++L  +  P +    H+P VIL+VGVNGV
Sbjct: 338 RKIIDSLTAHASRKELKDAEALYGKLKEEMGEILQKVDAPLDIS-GHQPFVILMVGVNGV 396

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ 
Sbjct: 397 GKTTTIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVI 456

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+KVDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 457 FDAIQAAKARKVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEQAPHEVMLTIDASTG 516

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q  +F+   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF 
Sbjct: 517 QNAVSQARLFNEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFK 576

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 577 ADDFIEALFARED 589


>gi|70733142|ref|YP_262915.1| signal recognition particle-docking protein FtsY [Pseudomonas
           fluorescens Pf-5]
 gi|68347441|gb|AAY95047.1| signal recognition particle-docking protein FtsY [Pseudomonas
           fluorescens Pf-5]
          Length = 497

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 125/309 (40%), Positives = 190/309 (61%), Gaps = 2/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVA 63
                 + +  +L +G + TS  + EG+  +   ++ +DD + E+LE  L+ +D+GV   
Sbjct: 183 PAEESKIGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDELLEDLETRLLTADVGVEAT 242

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             I++ L  K   K ++    LY  +   +  ML P+ +P      ++P VILVVGVNG 
Sbjct: 243 SVIIQNLTQKVARKQLTDSDALYASLQAELTSMLKPVEQPLQIVAQNKPFVILVVGVNGA 302

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ 
Sbjct: 303 GKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVI 362

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TG
Sbjct: 363 FDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTG 422

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q + F+     +GL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F 
Sbjct: 423 QNAINQAKQFNQTVQLSGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFE 482

Query: 303 AKDFSAVIT 311
           A+ F   + 
Sbjct: 483 AEPFVQALF 491


>gi|257455444|ref|ZP_05620679.1| cell division protein FtsY [Enhydrobacter aerosaccus SK60]
 gi|257447406|gb|EEV22414.1| cell division protein FtsY [Enhydrobacter aerosaccus SK60]
          Length = 404

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 135/307 (43%), Positives = 195/307 (63%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
             +   W  ++ +G + +   L EG+T+I I  + +DD + EE+ED L+ +DIGV    +
Sbjct: 94  PEQKGGWFSRMKQGLSKSRKNLTEGLTNILIGGKEIDDELLEEVEDQLLVADIGVNATNR 153

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L       D+     LY  + + +  +L P   P   D S +P VILVVGVNGVGK
Sbjct: 154 IIKNLTEATARGDLIYSHSLYKALQKELTDILTPKVAPLVVDASTKPFVILVVGVNGVGK 213

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++   G  VMLAAGDTFR+AA +QL++W +R +   V    GSD+A++ ++
Sbjct: 214 TTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQVWGERNNIPVVAQGHGSDSASVIFD 273

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+A+ +DVLI DTAGRL N + LM  + K+IRV+++ DP APH  + VLDA TGQN
Sbjct: 274 AIQSAKARGIDVLIADTAGRLQNKTNLMEELKKVIRVMQKADPTAPHESMIVLDAGTGQN 333

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QVE+F+     TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL PF A 
Sbjct: 334 ALNQVEIFNEAVPLTGVTVTKLDGTAKGGVVFNIAENTNVPIRFIGVGEKIDDLRPFQAD 393

Query: 305 DFSAVIT 311
           DF   + 
Sbjct: 394 DFVKALF 400


>gi|37527951|ref|NP_931296.1| cell division protein [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787387|emb|CAE16476.1| cell division protein [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 424

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 131/316 (41%), Positives = 199/316 (62%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S ++       +  +L +    T   L  G   + S +++DD + +ELE+ L+ +D+GV
Sbjct: 110 ISKEQERPTKEGFFSRLKRSLVKTRQNLGSGFLSLFSGKKIDDDLFDELEEQLLIADVGV 169

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K++     LY  + E +  +L  ++KP + +    P+VIL+VGV
Sbjct: 170 DTTRKIISSLTEHASRKELKDAEALYAKLKEEMSGILTKVNKPLDIE-GKTPYVILMVGV 228

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D A
Sbjct: 229 NGVGKTTTIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQHTGADPA 288

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+AK VDVLI DTAGRL N S LM  + K++RV+K+LD +APH ++ +LDA
Sbjct: 289 SVIFDAIQSAKAKSVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEIMLILDA 348

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL 
Sbjct: 349 STGQNAISQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLR 408

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 409 PFKADDFIEALFARED 424


>gi|220924283|ref|YP_002499585.1| signal recognition particle-docking protein FtsY [Methylobacterium
           nodulans ORS 2060]
 gi|219948890|gb|ACL59282.1| signal recognition particle-docking protein FtsY [Methylobacterium
           nodulans ORS 2060]
          Length = 437

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 151/304 (49%), Positives = 205/304 (67%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
              W  +LT G   TS  L E +T + + R+LD    EELED LI++D GV  A +I E 
Sbjct: 130 KRGWWSRLTGGLRRTSSALSERVTGLFTKRKLDATTLEELEDALIQADFGVETAMRISEA 189

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +   RY K ++   V   ++  + + L P+++P   D   +P V+L+VGVNG GKTT IG
Sbjct: 190 VGKGRYEKGIAPDEVRAILATEVERALEPVARPLALDPGAKPFVLLMVGVNGAGKTTTIG 249

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++K    G  VMLAAGDTFR+AAI+QLK+W +RT A  V    G+DAA LA++A + A
Sbjct: 250 KLAQKFRAQGRSVMLAAGDTFRAAAIEQLKVWGERTGAPVVTRPQGADAAGLAFDALQAA 309

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVL+IDTAGRL N + LMA + K++RV+++LD  APH+VL VLDAT GQNA+ QV
Sbjct: 310 RESGTDVLMIDTAGRLQNKAGLMAELEKIVRVIRKLDESAPHAVLLVLDATVGQNAISQV 369

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F   AG TGL+MTK+DGTARGG L+ +     +PV+F+GVGEG++DLEPF A+DF+  
Sbjct: 370 ELFQKTAGVTGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVDDLEPFTARDFARA 429

Query: 310 ITGC 313
           I G 
Sbjct: 430 IAGL 433


>gi|213967799|ref|ZP_03395946.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tomato T1]
 gi|301382436|ref|ZP_07230854.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061172|ref|ZP_07252713.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tomato K40]
 gi|302132035|ref|ZP_07258025.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213927575|gb|EEB61123.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. tomato T1]
          Length = 513

 Score =  337 bits (866), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 126/304 (41%), Positives = 190/304 (62%), Gaps = 2/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68
            + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV     I++
Sbjct: 204 KVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIK 263

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K   K ++  + LY  +   +  ML  + +P      H+P VILVVGVNG GKTT 
Sbjct: 264 SLTQKVARKQLTDAQALYTSLQGELAAMLKLVEQPLVIKAEHKPFVILVVGVNGAGKTTT 323

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A +
Sbjct: 324 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQ 383

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ 
Sbjct: 384 AAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAIN 443

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F 
Sbjct: 444 QAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPFV 503

Query: 308 AVIT 311
             + 
Sbjct: 504 QALF 507


>gi|192360531|ref|YP_001983953.1| signal recognition particle receptor FtsY [Cellvibrio japonicus
           Ueda107]
 gi|190686696|gb|ACE84374.1| signal recognition particle receptor FtsY [Cellvibrio japonicus
           Ueda107]
          Length = 374

 Score =  337 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 131/311 (42%), Positives = 202/311 (64%), Gaps = 2/311 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           A   L +  ++ +G + TS    EG+  +    + +D+ + EELE  L+ +D+G+    +
Sbjct: 63  AEPKLGFFARIKRGLSRTSSHFAEGLGKLFLGRKTIDEELFEELETQLLIADVGMEATSE 122

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L ++   K ++    L+  + E + ++L P+ +P     +++P+VILVVGVNGVGK
Sbjct: 123 IIDNLTSRVARKQLADSDALFAALREQLAELLRPVEQPLVIPAANKPYVILVVGVNGVGK 182

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++ + G KVMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++
Sbjct: 183 TTTIGKLAKRLQNDGRKVMLAAGDTFRAAAVEQLQVWGQRNNVPVIAQHSGADSASVIFD 242

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   AQ++ +DV+I DTAGRLHN + LM  + K+ RV+ +LD  APH VL VLDA TGQN
Sbjct: 243 ALSAAQSRGIDVVIADTAGRLHNKNHLMDELAKVKRVMAKLDVSAPHEVLLVLDAGTGQN 302

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q E F   AG TG+ +TK+DGTA+GG +  +     +PV F+GVGEGI+DL+PF A+
Sbjct: 303 ALNQAEQFRDAAGVTGIALTKLDGTAKGGVIFALSKKFGLPVRFIGVGEGIDDLQPFAAE 362

Query: 305 DFSAVITGCLD 315
            F   +    D
Sbjct: 363 PFINALFNVAD 373


>gi|218507763|ref|ZP_03505641.1| cell division protein [Rhizobium etli Brasil 5]
          Length = 303

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 180/301 (59%), Positives = 236/301 (78%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+GV  A ++ + L +
Sbjct: 1   WFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLGVETALRVTDTLAS 60

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +RY KDV+ + V   ++  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGKL+
Sbjct: 61  ERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKTTTIGKLA 120

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            K+S AGLKVM+AAGDTFR+AAI+QLKIWA+RT+++FV +++G+DAA LAY+AF+QA+AK
Sbjct: 121 AKLSGAGLKVMVAAGDTFRAAAIEQLKIWAERTNSEFVGTKLGADAAGLAYDAFEQAKAK 180

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K DVLI+DTAGRL N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL QVE+F
Sbjct: 181 KCDVLIVDTAGRLQNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALSQVEIF 240

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF A+DF+  I G
Sbjct: 241 RNVAGVNGLIMTKLDGTARGGILVAISAKHKLPVYFIGVGEGVDDLEPFEAEDFAHAIAG 300

Query: 313 C 313
            
Sbjct: 301 L 301


>gi|251791621|ref|YP_003006342.1| signal recognition particle-docking protein FtsY [Dickeya zeae
           Ech1591]
 gi|247540242|gb|ACT08863.1| signal recognition particle-docking protein FtsY [Dickeya zeae
           Ech1591]
          Length = 452

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 124/316 (39%), Positives = 189/316 (59%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S ++       +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV
Sbjct: 138 VSQEQERPTKEGFFARLKRSLIKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGV 197

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI++ L      K +     L   +   +  +L  +  P   D    P VIL+VGV
Sbjct: 198 ETTRKIIDRLTEHASRKQLKDAEALIALLKAEMSDILAKVDAPLAID-GKTPFVILMVGV 256

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A
Sbjct: 257 NGVGKTTTIGKLARQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSA 316

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA
Sbjct: 317 SVIFDALQAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEEAPHEVMLTLDA 376

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++F+   G  G+ +TK+DGTA+GG +  I     IP+ ++GVGE I+DL 
Sbjct: 377 STGQNAVSQAKLFNEAVGLNGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGESIDDLR 436

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 437 PFKADDFIEALFARED 452


>gi|170741579|ref|YP_001770234.1| signal recognition particle-docking protein FtsY [Methylobacterium
           sp. 4-46]
 gi|168195853|gb|ACA17800.1| signal recognition particle-docking protein FtsY [Methylobacterium
           sp. 4-46]
          Length = 473

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 151/309 (48%), Positives = 208/309 (67%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E   W  +LT G   TS  L E +T + + R+LD    EELED LI++D GV  A +I E
Sbjct: 165 ERRGWWSRLTGGLRRTSSALSERVTGLFTKRKLDATTLEELEDALIQADFGVETATRIAE 224

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +   RY K +S   V   ++  + + L P+++P   + + +P V+L+VGVNG GKTT I
Sbjct: 225 AVGKGRYEKGISPDEVRAILAAEVERALEPVARPLTLEGAAKPFVLLMVGVNGAGKTTTI 284

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++K    G  VMLAAGDTFR+AAI+QLK+W +RT A  +    G+DAA LA++A + 
Sbjct: 285 GKLAQKFRAQGRSVMLAAGDTFRAAAIEQLKVWGERTGAPVLSRPQGADAAGLAFDALQA 344

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DVL+IDTAGRL N + LMA + K++RV+++LD  APH+VL VLDAT GQNA+ Q
Sbjct: 345 AREAGTDVLMIDTAGRLQNKAGLMAELEKIVRVIRKLDETAPHAVLLVLDATVGQNAISQ 404

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           VE+F   AG +GL+MTK+DGTARGG L+ +     +PV+F+GVGEG++DLEPF A+DF+ 
Sbjct: 405 VELFQKTAGVSGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVDDLEPFTARDFAR 464

Query: 309 VITGCLDYG 317
            I G    G
Sbjct: 465 AIAGLDKDG 473


>gi|271502549|ref|YP_003335575.1| signal recognition particle-docking protein FtsY [Dickeya dadantii
           Ech586]
 gi|270346104|gb|ACZ78869.1| signal recognition particle-docking protein FtsY [Dickeya dadantii
           Ech586]
          Length = 466

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 190/316 (60%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S ++       +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV
Sbjct: 152 VSQEQERPTKEGFFARLKRSLIKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGV 211

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     L   +   +  +L  +  P   D S  P VIL+VGV
Sbjct: 212 ETTRKIIARLTEHASRKQLKDAEALIALLKSEMSDILAKVDVPLAID-SKTPFVILMVGV 270

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A
Sbjct: 271 NGVGKTTTIGKLARQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSA 330

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA
Sbjct: 331 SVIFDALQAAKARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEVMLTLDA 390

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++F+   G +G+ +TK+DGTA+GG +  I     IP+ ++GVGE I+DL 
Sbjct: 391 STGQNAVSQAKLFNEAVGLSGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGESIDDLR 450

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 451 PFKADDFIEALFARED 466


>gi|284008656|emb|CBA75288.1| cell division protein [Arsenophonus nasoniae]
          Length = 414

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 202/309 (65%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+      ++  +L +G   T   +  G       +++DD + +ELE+ L+ +D+G+   
Sbjct: 103 QQKKPAKENFFSRLRRGLLKTRQNMGIGFVSFFRGKKIDDDLFDELEEQLLIADVGLETT 162

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI++ L      K+++   +LY  + E +  +L  + KP   + +  P+VIL+VGVNGV
Sbjct: 163 RKIIDSLTNHANRKELNDAAMLYSKLREEMANILSGVEKPLVIE-NKLPYVILMVGVNGV 221

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R +   V  + G+D A++ 
Sbjct: 222 GKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQQTGADPASVI 281

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+AK +D+LI DTAGRL N + LM  + K++RV+++LD HAPH V+  LDA+TG
Sbjct: 282 FDAIQSAKAKGIDILIADTAGRLQNKTHLMEELKKIVRVMQKLDQHAPHEVMLTLDASTG 341

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+I+TK+DGTA+GG +  I    KIP+ ++G+GEGI+DL PFV
Sbjct: 342 QNAINQAKIFHEAVGLTGIILTKLDGTAKGGVIFAIADQFKIPIRYIGIGEGIDDLRPFV 401

Query: 303 AKDFSAVIT 311
           A DF   + 
Sbjct: 402 AHDFIEALF 410


>gi|320539370|ref|ZP_08039039.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Serratia symbiotica str.
           Tucson]
 gi|320030495|gb|EFW12505.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Serratia symbiotica str.
           Tucson]
          Length = 440

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 190/313 (60%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L      T   L  G   +   +R+DD + +ELE+ L+ +D+GV   
Sbjct: 129 EQERPTKEGFFTRLKHSLLKTKQNLGSGFISLFRGKRIDDDLFDELEEQLLIADVGVETT 188

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  +   + ++L  + +P N      P+VIL+VGVNGV
Sbjct: 189 RKIITTLTQHASRKQLKDAEALYGKLKAEMSEILTNVDRPLNVS-GKAPYVILMVGVNGV 247

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ 
Sbjct: 248 GKTTTIGKLARQFQAKGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSASVI 307

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TG
Sbjct: 308 FDAVQAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDTQAPHEVMLTLDASTG 367

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 368 QNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFK 427

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 428 ADDFIEALFAQED 440


>gi|17986415|ref|NP_539049.1| signal recognition particle receptor FTSY [Brucella melitensis bv.
           1 str. 16M]
 gi|17982009|gb|AAL51313.1| signal recognition particle receptor ftsy [Brucella melitensis bv.
           1 str. 16M]
          Length = 314

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 171/312 (54%), Positives = 225/312 (72%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M  +      LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+
Sbjct: 1   MPAEVAPEPKLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGL 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A ++ + L +  Y KDV  + V   +S  I K+L P++KP   D SH+PHVILVVGVN
Sbjct: 61  ETAMRVTDALASGHYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA 
Sbjct: 121 GTGKTTTIGKLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAG 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LAY+A+++A+    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDAT
Sbjct: 181 LAYDAWEKAKEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QVE+F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEP
Sbjct: 241 TGQNALNQVEIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEP 300

Query: 301 FVAKDFSAVITG 312
           F AKDF+  I G
Sbjct: 301 FAAKDFARAIAG 312


>gi|90421123|ref|ZP_01229025.1| cell division protein FtsY [Aurantimonas manganoxydans SI85-9A1]
 gi|90334615|gb|EAS48395.1| cell division protein FtsY [Aurantimonas manganoxydans SI85-9A1]
          Length = 362

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 161/303 (53%), Positives = 219/303 (72%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            + W+++L +G A +S +L   I  I + RRLD+   ++ ED+LI++D+GV  A KI + 
Sbjct: 55  RVPWLQRLREGLARSSTQLTGSIGAIFTKRRLDEDTLQDFEDVLIQADLGVETALKITDR 114

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L   R+ +++S Q V   ++E I K L P++ P   D + +PHVILVVGVNG GKTT IG
Sbjct: 115 LSEGRFGREISGQDVRTILAEEIEKALDPVALPLELDLAKKPHVILVVGVNGTGKTTTIG 174

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K++  GLKV L AGDTFR+AA++QLKIW +RT ++ V   IG+DAA+LAYE + +A
Sbjct: 175 KLAAKLTRGGLKVTLCAGDTFRAAAVEQLKIWGERTQSEVVAKAIGADAASLAYEGYDRA 234

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DVLIIDTAGRL N + LMA + K++RVL++ +P APH+VL  LDATTGQNA+ QV
Sbjct: 235 VENGSDVLIIDTAGRLQNKTELMAELEKIVRVLQKREPDAPHTVLLTLDATTGQNAMNQV 294

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG  GL+MTK+DG+ARGG L+ I    ++PVYF+GVGEGI+DLEPF AKDF+A 
Sbjct: 295 EIFRNVAGVNGLVMTKLDGSARGGILVAIAAKFRLPVYFVGVGEGIDDLEPFKAKDFAAA 354

Query: 310 ITG 312
           I G
Sbjct: 355 IAG 357


>gi|294638159|ref|ZP_06716415.1| cell division protein FtsY [Edwardsiella tarda ATCC 23685]
 gi|291088726|gb|EFE21287.1| cell division protein FtsY [Edwardsiella tarda ATCC 23685]
          Length = 500

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 127/315 (40%), Positives = 196/315 (62%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV 
Sbjct: 187 AREQEKPTKEGFFARLKRSLVKTRQNLGSGFFGLFRGKKIDDDLFDELEEQLLVADVGVD 246

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI++ L T    K++     LY  + + + ++L  +  P +    H+P VIL+VGVN
Sbjct: 247 TTRKIIDTLTTHASRKELKDAEALYGKLKQEMGEILHKVDAPLDIS-GHQPFVILMVGVN 305

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A+
Sbjct: 306 GVGKTTTIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSAS 365

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+KVDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+
Sbjct: 366 VIFDAIQAAKARKVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEQAPHEVMLTIDAS 425

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q  +FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL P
Sbjct: 426 TGQNAISQARLFHEAVGLTGITLTKLDGTAKGGVIFAVADQFGIPIRYIGVGEGIEDLRP 485

Query: 301 FVAKDFSAVITGCLD 315
           F A DF   +    D
Sbjct: 486 FKADDFIEALFARED 500


>gi|327482688|gb|AEA85998.1| signal recognition particle receptor FtsY [Pseudomonas stutzeri DSM
           4166]
          Length = 442

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 131/307 (42%), Positives = 193/307 (62%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65
           A   L +  +L +G + TS  + EG+  +   ++ +DD + +ELE  L+ +D+GV     
Sbjct: 130 APAKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLDELETRLLTADVGVEATTA 189

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L  +   K+++    LY  + E +  +L P+ +P   D S RP+VILVVGVNGVGK
Sbjct: 190 IMQNLTRRVSRKELADSGALYTALQEELVGLLKPVEQPLAVDASKRPYVILVVGVNGVGK 249

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++
Sbjct: 250 TTTIGKLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNGIPVIAQHTGADSASVIFD 309

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQN
Sbjct: 310 AVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVMGKLDESAPHEVLLVLDAGTGQN 369

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q   F+     TGL +TK+DGTA+GG +  +      P+ ++GVGEGI+DL  F A 
Sbjct: 370 AINQTRQFNQAVELTGLALTKLDGTAKGGVIFALAKQFGTPIRYIGVGEGIDDLRTFEAD 429

Query: 305 DFSAVIT 311
            F   + 
Sbjct: 430 AFVKALF 436


>gi|92115105|ref|YP_575033.1| signal recognition particle-docking protein FtsY [Chromohalobacter
           salexigens DSM 3043]
 gi|91798195|gb|ABE60334.1| signal recognition particle-docking protein FtsY [Chromohalobacter
           salexigens DSM 3043]
          Length = 501

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 126/310 (40%), Positives = 189/310 (60%), Gaps = 3/310 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           +   +   W  ++  G   T     EG+  +    +++DD + E+LE  L+ +D+G+   
Sbjct: 184 QERPKKAGWFARIKAGLGKTRANFTEGLAGLFLGKKQIDDDLMEDLETQLLMADVGIEAT 243

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
            +I++ L  +   K++   + LY  + E +  +L P+++P         P VIL+VGVNG
Sbjct: 244 TEIIDRLTERVSRKELKDPQALYSALQEELQDLLDPVAQPLALPPKGQGPFVILMVGVNG 303

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+++    G  VMLAAGDTFR+AA++QLK+W +R     V    G+D+A++
Sbjct: 304 VGKTTTIGKLTQRFQREGRSVMLAAGDTFRAAAVEQLKVWGERNHVPVVAQHTGADSASV 363

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A   A+A+ VDVLI DTAGRLHN S LM  + K+ RV+ +LD  APH V+ VLDA T
Sbjct: 364 IYDALSAAKARGVDVLIADTAGRLHNKSHLMEELKKVRRVMAKLDEQAPHEVMLVLDAGT 423

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q   F+     TG+ +TK+DGTA+GG +  +      P+ F+GVGE ++DL PF
Sbjct: 424 GQNALSQASTFNEAVPVTGITLTKLDGTAKGGIIFALAKQLGTPIRFIGVGETLDDLRPF 483

Query: 302 VAKDFSAVIT 311
            A+DF + + 
Sbjct: 484 AAEDFVSALF 493


>gi|254490588|ref|ZP_05103774.1| signal recognition particle-docking protein FtsY [Methylophaga
           thiooxidans DMS010]
 gi|224464332|gb|EEF80595.1| signal recognition particle-docking protein FtsY [Methylophaga
           thiooxydans DMS010]
          Length = 354

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 130/316 (41%), Positives = 198/316 (62%), Gaps = 2/316 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGV 60
           + +    E   +  +L +G + TS KL EG    I+  + +DD + EELE  LI +D+G+
Sbjct: 38  AEKPDQPEKTGFFGRLKQGLSRTSNKLTEGFASLILGRKTIDDDLLEELETQLITADLGI 97

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               +I+ +L  +   K +S    L+D + + +  +L P S+P        P+VIL+VG+
Sbjct: 98  DATNRIISDLTQRVARKQLSDVEALFDAMRDDMVTILQPSSQPLTVPDKPGPYVILMVGI 157

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R S   +    G+D+A
Sbjct: 158 NGVGKTTTIGKLAKQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQPKGADSA 217

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+++  D+LI DTAGRLH  S LM  + K+ RV+ ++D  APH ++ VLDA
Sbjct: 218 SVIFDALQAAKSRGADILIADTAGRLHTQSNLMEELKKVKRVMGKIDETAPHEIMLVLDA 277

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNAL+Q + F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I+DL 
Sbjct: 278 GTGQNALQQAQQFNDAVGVTGITLTKLDGTAKGGIIFAIADKTGLPIRYIGVGEKIDDLR 337

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   + G  D
Sbjct: 338 PFDAADFVDALLGRED 353


>gi|154244370|ref|YP_001415328.1| signal recognition particle-docking protein FtsY [Xanthobacter
           autotrophicus Py2]
 gi|154158455|gb|ABS65671.1| signal recognition particle-docking protein FtsY [Xanthobacter
           autotrophicus Py2]
          Length = 529

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 155/309 (50%), Positives = 218/309 (70%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +       +  +L  G A T+  L +GITD++S R+LD    EELED+LIR+D+GV  + 
Sbjct: 220 EPQPAKKGFWSRLASGLARTASSLGQGITDLVSKRKLDADTLEELEDVLIRADLGVETSM 279

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +IVE +   R+ K +S + V   ++E + ++L+P+++P   D +H+P V+L+VGVNG GK
Sbjct: 280 RIVETVGKGRHDKMISPEEVKRLIAEEVERILIPVAQPLVVDTAHKPFVVLMVGVNGSGK 339

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ +    G KV+LAAGDTFR+AAI+QLK+W  RT A  +  E GSDAA +A+E
Sbjct: 340 TTTIGKLAAQWRTEGKKVVLAAGDTFRAAAIEQLKVWGTRTGATVIAREQGSDAAGVAHE 399

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A  +A+A   D+L++DTAGRL N + LMA + K++RV+K+L+P APH+VL VLDAT GQN
Sbjct: 400 AVVEARAAGADILMVDTAGRLQNRTELMAELEKVVRVIKKLEPSAPHAVLLVLDATVGQN 459

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QVE F  +AG TG++MTK+DGTARGG L+ I   HK+PV+ +GVGE   DL+PF A+
Sbjct: 460 ALSQVEAFTRIAGVTGMVMTKLDGTARGGILVAIAAKHKLPVHLIGVGEAAEDLQPFAAR 519

Query: 305 DFSAVITGC 313
           DF+  I G 
Sbjct: 520 DFARAIAGL 528


>gi|114705326|ref|ZP_01438234.1| GTP-binding signal recognition particle (SRP54)
           G-domain:ATP/GTP-binding site motif A (P-loop):AAA
           [Fulvimarina pelagi HTCC2506]
 gi|114540111|gb|EAU43231.1| GTP-binding signal recognition particle (SRP54)
           G-domain:ATP/GTP-binding site motif A (P-loop):AAA
           [Fulvimarina pelagi HTCC2506]
          Length = 403

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 167/307 (54%), Positives = 222/307 (72%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A+  L W+++L +    +S  L   IT I + RRLDD V ++ ED+LI++D+GV  A +I
Sbjct: 87  AAPKLPWLQRLREALGRSSSNLTGSITSIFTKRRLDDDVLQDFEDVLIQADLGVETAMRI 146

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            + L   RY K++S   V   ++E I K L P+++P   D    PHVILVVGVNG GKTT
Sbjct: 147 TDRLSEGRYGKEISGSEVKRVLAEEIEKTLDPVAQPLELDLDKVPHVILVVGVNGTGKTT 206

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ K++ AG+ V LAAGDTFR+AA++QLKIW +RT+++ V  +IG+DAA LA++A+
Sbjct: 207 TIGKLAAKLTRAGISVTLAAGDTFRAAAVEQLKIWGERTNSEVVARQIGADAAGLAFDAY 266

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A   K DVLIIDTAGRL N + LMA + K+IRVL++ DP +PH+VLQ LDATTGQNA+
Sbjct: 267 DVAVKNKSDVLIIDTAGRLQNKAELMAELEKIIRVLQKRDPDSPHTVLQTLDATTGQNAM 326

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QV++F  VAG  GL+MTK+DGTARGG L+ I   HK+PVYF+GVGEGI+DLEPF AKDF
Sbjct: 327 NQVDIFRNVAGVNGLVMTKLDGTARGGILVAIGSKHKLPVYFVGVGEGIDDLEPFKAKDF 386

Query: 307 SAVITGC 313
           +  I G 
Sbjct: 387 ANAIAGI 393


>gi|253991203|ref|YP_003042559.1| cell division protein ftsy [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782653|emb|CAQ85817.1| cell division protein ftsy [Photorhabdus asymbiotica]
          Length = 494

 Score =  334 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 128/316 (40%), Positives = 196/316 (62%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S ++       +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV
Sbjct: 180 VSKEQERPTKEGFFTRLKRSLVKTRQNLGSGFLSLFRGKKIDDDLFDELEEQLLIADVGV 239

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K++     LY  + E +  +L+ + KP + +    P+VIL+VGV
Sbjct: 240 DTTRKIIGSLTAHASRKELKDAEALYAKLKEEMSGILVKVDKPLDIE-GKTPYVILMVGV 298

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D A
Sbjct: 299 NGVGKTTTIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQHTGADPA 358

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+AK +D+LI DTAGRL N S LM  + K++RV+K+LD  APH ++  LDA
Sbjct: 359 SVIFDAMQSAKAKGIDILIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTLDA 418

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL 
Sbjct: 419 STGQNAISQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLR 478

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 479 PFKADDFIEALFARED 494


>gi|306842917|ref|ZP_07475553.1| signal recognition particle-docking protein FtsY [Brucella sp. BO2]
 gi|306286940|gb|EFM58460.1| signal recognition particle-docking protein FtsY [Brucella sp. BO2]
          Length = 470

 Score =  334 bits (858), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 171/303 (56%), Positives = 225/303 (74%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + 
Sbjct: 166 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 225

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + RY KDVS + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IG
Sbjct: 226 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 285

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A
Sbjct: 286 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 345

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QV
Sbjct: 346 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 405

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEG++DLEPF AKDF+  
Sbjct: 406 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGVDDLEPFAAKDFARA 465

Query: 310 ITG 312
           I G
Sbjct: 466 IAG 468


>gi|306843384|ref|ZP_07475985.1| signal recognition particle-docking protein FtsY [Brucella sp. BO1]
 gi|306276075|gb|EFM57775.1| signal recognition particle-docking protein FtsY [Brucella sp. BO1]
          Length = 469

 Score =  334 bits (858), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 170/303 (56%), Positives = 225/303 (74%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + 
Sbjct: 165 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 224

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + RY KDVS + V   +S  I K+L P++KP   + SH+PHVILVVGVNG GKTT IG
Sbjct: 225 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELNLSHKPHVILVVGVNGTGKTTTIG 284

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A
Sbjct: 285 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 344

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QV
Sbjct: 345 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 404

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEG++DLEPF AKDF+  
Sbjct: 405 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGVDDLEPFAAKDFARA 464

Query: 310 ITG 312
           I G
Sbjct: 465 IAG 467


>gi|238921553|ref|YP_002935068.1| cell division protein FtsY, [Edwardsiella ictaluri 93-146]
 gi|238871122|gb|ACR70833.1| cell division protein FtsY, putative [Edwardsiella ictaluri 93-146]
          Length = 557

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 194/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + +ELE+ LI +D+GV   
Sbjct: 246 EQEKPVKEGFFARLKRSLVKTRQNLGSGFFSLFRGKKIDDDLFDELEEQLIVADVGVETT 305

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI++ L      K++     LY  + E + ++L  +  P +    H+P VIL+VGVNGV
Sbjct: 306 RKIIDSLTAHASRKELKDAEALYGKLKEEMGEILQKVDAPLDIS-GHQPFVILMVGVNGV 364

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ 
Sbjct: 365 GKTTTIGKLARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNHISVIAQHTGADSASVI 424

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+KVDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 425 FDAIQAAKARKVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEQAPHEVMLTIDASTG 484

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q  +F+   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF 
Sbjct: 485 QNAVSQARLFNEAVGLTGITLTKLDGTAKGGVIFSVADRFGIPIRYIGVGEGIEDLRPFK 544

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 545 ADDFIEALFARED 557


>gi|23502784|ref|NP_698911.1| signal recognition particle-docking protein FtsY [Brucella suis
           1330]
 gi|62290788|ref|YP_222581.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 1 str. 9-941]
 gi|82700699|ref|YP_415273.1| GTP-binding signal recognition particle [Brucella melitensis biovar
           Abortus 2308]
 gi|254708922|ref|ZP_05170733.1| cell division protein FtsY [Brucella pinnipedialis B2/94]
 gi|256370336|ref|YP_003107847.1| signal recognition particle-docking protein FtsY [Brucella microti
           CCM 4915]
 gi|260546052|ref|ZP_05821792.1| cell division protein FtsY [Brucella abortus NCTC 8038]
 gi|260758838|ref|ZP_05871186.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 4 str. 292]
 gi|260760562|ref|ZP_05872905.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|261315022|ref|ZP_05954219.1| signal recognition particle-docking protein FtsY [Brucella
           pinnipedialis M163/99/10]
 gi|261321389|ref|ZP_05960586.1| signal recognition particle-docking protein FtsY [Brucella ceti
           M644/93/1]
 gi|261751083|ref|ZP_05994792.1| signal recognition particle-docking protein FtsY [Brucella suis bv.
           5 str. 513]
 gi|297247175|ref|ZP_06930893.1| signal recognition particle receptor [Brucella abortus bv. 5 str.
           B3196]
 gi|23348805|gb|AAN30826.1| signal recognition particle-docking protein FtsY [Brucella suis
           1330]
 gi|62196920|gb|AAX75220.1| FtsY, signal recognition particle-docking protein [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616800|emb|CAJ11890.1| GTP-binding signal recognition particle (SRP54)
           G-domain:ATP/GTP-binding site motif A (P-loop):AAA
           ATPase:Cell division trans [Brucella melitensis biovar
           Abortus 2308]
 gi|256000499|gb|ACU48898.1| signal recognition particle-docking protein FtsY [Brucella microti
           CCM 4915]
 gi|260096159|gb|EEW80035.1| cell division protein FtsY [Brucella abortus NCTC 8038]
 gi|260669156|gb|EEX56096.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 4 str. 292]
 gi|260670994|gb|EEX57815.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|261294079|gb|EEX97575.1| signal recognition particle-docking protein FtsY [Brucella ceti
           M644/93/1]
 gi|261304048|gb|EEY07545.1| signal recognition particle-docking protein FtsY [Brucella
           pinnipedialis M163/99/10]
 gi|261740836|gb|EEY28762.1| signal recognition particle-docking protein FtsY [Brucella suis bv.
           5 str. 513]
 gi|297174344|gb|EFH33691.1| signal recognition particle receptor [Brucella abortus bv. 5 str.
           B3196]
          Length = 463

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 172/303 (56%), Positives = 225/303 (74%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + 
Sbjct: 159 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 218

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + RY KDVS + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IG
Sbjct: 219 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 278

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A
Sbjct: 279 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 338

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QV
Sbjct: 339 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 398

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  
Sbjct: 399 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 458

Query: 310 ITG 312
           I G
Sbjct: 459 IAG 461


>gi|256059908|ref|ZP_05450094.1| GTP-binding signal recognition particle [Brucella neotomae 5K33]
 gi|261323880|ref|ZP_05963077.1| signal recognition particle-docking protein FtsY [Brucella neotomae
           5K33]
 gi|261299860|gb|EEY03357.1| signal recognition particle-docking protein FtsY [Brucella neotomae
           5K33]
          Length = 465

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 172/303 (56%), Positives = 224/303 (73%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LSW  +L +G A +S  L   I  I + R+LDD   ++LED+LI++D+G+  A ++ + 
Sbjct: 161 KLSWFERLRRGLARSSSSLSNSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 220

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + RY KDVS + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IG
Sbjct: 221 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 280

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A
Sbjct: 281 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 340

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QV
Sbjct: 341 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 400

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  
Sbjct: 401 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 460

Query: 310 ITG 312
           I G
Sbjct: 461 IAG 463


>gi|148560595|ref|YP_001259756.1| cell division protein FtsY [Brucella ovis ATCC 25840]
 gi|163843957|ref|YP_001628361.1| signal recognition particle-docking protein FtsY [Brucella suis
           ATCC 23445]
 gi|189025002|ref|YP_001935770.1| cell division protein FtsY [Brucella abortus S19]
 gi|237816295|ref|ZP_04595288.1| signal recognition particle-docking protein FtsY [Brucella abortus
           str. 2308 A]
 gi|254690075|ref|ZP_05153329.1| GTP-binding signal recognition particle [Brucella abortus bv. 6
           str. 870]
 gi|254694563|ref|ZP_05156391.1| GTP-binding signal recognition particle [Brucella abortus bv. 3
           str. Tulya]
 gi|254696188|ref|ZP_05158016.1| GTP-binding signal recognition particle [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254700575|ref|ZP_05162403.1| GTP-binding signal recognition particle [Brucella suis bv. 5 str.
           513]
 gi|254704945|ref|ZP_05166773.1| GTP-binding signal recognition particle [Brucella suis bv. 3 str.
           686]
 gi|254707541|ref|ZP_05169369.1| GTP-binding signal recognition particle [Brucella pinnipedialis
           M163/99/10]
 gi|254713651|ref|ZP_05175462.1| GTP-binding signal recognition particle [Brucella ceti M644/93/1]
 gi|254715995|ref|ZP_05177806.1| GTP-binding signal recognition particle [Brucella ceti M13/05/1]
 gi|254731106|ref|ZP_05189684.1| GTP-binding signal recognition particle [Brucella abortus bv. 4
           str. 292]
 gi|256030448|ref|ZP_05444062.1| GTP-binding signal recognition particle [Brucella pinnipedialis
           M292/94/1]
 gi|256158432|ref|ZP_05456330.1| GTP-binding signal recognition particle [Brucella ceti M490/95/1]
 gi|256253852|ref|ZP_05459388.1| GTP-binding signal recognition particle [Brucella ceti B1/94]
 gi|256258328|ref|ZP_05463864.1| GTP-binding signal recognition particle [Brucella abortus bv. 9
           str. C68]
 gi|260755613|ref|ZP_05867961.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 6 str. 870]
 gi|260884639|ref|ZP_05896253.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 9 str. C68]
 gi|261214887|ref|ZP_05929168.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 3 str. Tulya]
 gi|261217763|ref|ZP_05932044.1| signal recognition particle-docking protein FtsY [Brucella ceti
           M13/05/1]
 gi|261220990|ref|ZP_05935271.1| signal recognition particle-docking protein FtsY [Brucella ceti
           B1/94]
 gi|261316421|ref|ZP_05955618.1| signal recognition particle-docking protein FtsY [Brucella
           pinnipedialis B2/94]
 gi|261755645|ref|ZP_05999354.1| signal recognition particle-docking protein FtsY [Brucella suis bv.
           3 str. 686]
 gi|265987492|ref|ZP_06100049.1| signal recognition particle-docking protein FtsY [Brucella
           pinnipedialis M292/94/1]
 gi|265996949|ref|ZP_06109506.1| signal recognition particle-docking protein FtsY [Brucella ceti
           M490/95/1]
 gi|294851176|ref|ZP_06791849.1| signal recognition particle receptor [Brucella sp. NVSL 07-0026]
 gi|148371852|gb|ABQ61831.1| cell division protein FtsY [Brucella ovis ATCC 25840]
 gi|163674680|gb|ABY38791.1| signal recognition particle-docking protein FtsY [Brucella suis
           ATCC 23445]
 gi|189020574|gb|ACD73296.1| cell division protein FtsY [Brucella abortus S19]
 gi|237788362|gb|EEP62577.1| signal recognition particle-docking protein FtsY [Brucella abortus
           str. 2308 A]
 gi|260675721|gb|EEX62542.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 6 str. 870]
 gi|260874167|gb|EEX81236.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 9 str. C68]
 gi|260916494|gb|EEX83355.1| signal recognition particle-docking protein FtsY [Brucella abortus
           bv. 3 str. Tulya]
 gi|260919574|gb|EEX86227.1| signal recognition particle-docking protein FtsY [Brucella ceti
           B1/94]
 gi|260922852|gb|EEX89420.1| signal recognition particle-docking protein FtsY [Brucella ceti
           M13/05/1]
 gi|261295644|gb|EEX99140.1| signal recognition particle-docking protein FtsY [Brucella
           pinnipedialis B2/94]
 gi|261745398|gb|EEY33324.1| signal recognition particle-docking protein FtsY [Brucella suis bv.
           3 str. 686]
 gi|262551417|gb|EEZ07407.1| signal recognition particle-docking protein FtsY [Brucella ceti
           M490/95/1]
 gi|264659689|gb|EEZ29950.1| signal recognition particle-docking protein FtsY [Brucella
           pinnipedialis M292/94/1]
 gi|294819765|gb|EFG36764.1| signal recognition particle receptor [Brucella sp. NVSL 07-0026]
          Length = 465

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 172/303 (56%), Positives = 225/303 (74%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + 
Sbjct: 161 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 220

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + RY KDVS + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IG
Sbjct: 221 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 280

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A
Sbjct: 281 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 340

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QV
Sbjct: 341 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 400

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  
Sbjct: 401 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 460

Query: 310 ITG 312
           I G
Sbjct: 461 IAG 463


>gi|300114349|ref|YP_003760924.1| signal recognition particle-docking protein FtsY [Nitrosococcus
           watsonii C-113]
 gi|299540286|gb|ADJ28603.1| signal recognition particle-docking protein FtsY [Nitrosococcus
           watsonii C-113]
          Length = 352

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 131/307 (42%), Positives = 194/307 (63%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           A E  S  ++L +    T   L  GI D+ +  + +DD + EE+E  L+ +D+GV   Q 
Sbjct: 27  AREKQSLFKRLRERLGRTRNNLTGGIADLMLGKKSIDDELLEEIEAQLLIADVGVEATQA 86

Query: 66  IVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I+++L  +   K +     L   + E +  +L P ++P     + +P VIL+VGVNGVGK
Sbjct: 87  IIKDLTVRTSRKQLQDAEALMAALRENMQALLTPCNQPLIIPAAIQPFVILMVGVNGVGK 146

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++
Sbjct: 147 TTTIGKLAKKFQAEGRSVMLAAGDTFRAAAVEQLQVWGERNQVPVMAQHGGADSASVIFD 206

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + AQA+ +DVLI DTAGRLH    LM  + K+ RV+ +++PHAPH ++  +DA TGQN
Sbjct: 207 AVQSAQARGIDVLIADTAGRLHTQINLMEELKKIKRVMGKVNPHAPHEIMLTVDAGTGQN 266

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + FH   G TG+I+TK+DGTA+GG +  I     IP+ F+GVGEGI+DL PF A+
Sbjct: 267 ALNQAKQFHEAVGLTGIILTKLDGTAKGGVIFAIAKKMGIPIRFIGVGEGIDDLRPFNAE 326

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 327 EFVDALL 333


>gi|265993697|ref|ZP_06106254.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis bv. 3 str. Ether]
 gi|262764678|gb|EEZ10599.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis bv. 3 str. Ether]
          Length = 463

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 171/303 (56%), Positives = 224/303 (73%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + 
Sbjct: 159 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 218

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + RY KDV  + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IG
Sbjct: 219 LASGRYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 278

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A
Sbjct: 279 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 338

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QV
Sbjct: 339 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 398

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  
Sbjct: 399 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 458

Query: 310 ITG 312
           I G
Sbjct: 459 IAG 461


>gi|163869370|ref|YP_001610626.1| cell division protein [Bartonella tribocorum CIP 105476]
 gi|161019073|emb|CAK02631.1| cell division protein [Bartonella tribocorum CIP 105476]
          Length = 390

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 162/312 (51%), Positives = 222/312 (71%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +    V  +  +W  +L KG + +S +L   I+D+   R+LD+   +ELED+LI++D+GV
Sbjct: 76  LPEPSVEQKKTAWFGRLRKGLSLSSQRLSGSISDLFLKRKLDEETLQELEDILIQADLGV 135

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A +I   L + RY KD+S   +   V++ I K+L P++ P   D SH+PHVIL+VGVN
Sbjct: 136 ETATRITNTLASSRYGKDLSSDDIHTIVADEIKKVLEPVAMPLELDLSHKPHVILLVGVN 195

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K+++ GL VMLAAGDTFR+AAI+QL IW  R  +  + +++G+DAA+
Sbjct: 196 GTGKTTTIGKLAAKLTEGGLNVMLAAGDTFRAAAIEQLHIWGKRIDSPVISTKLGADAAS 255

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++AF++A+    DVLIIDTAGRL N S LM  + K+IRVL++  P APH++LQ LDAT
Sbjct: 256 LAFDAFEKAKKANSDVLIIDTAGRLQNKSELMDELAKIIRVLRKHSPQAPHTILQTLDAT 315

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QVE+F  +AG  GL+MTK+DGTARGG LI I   HK+P+YF+GVGE I DL+P
Sbjct: 316 TGQNALSQVEIFRNIAGVNGLVMTKLDGTARGGILIAIAAKHKLPIYFIGVGENIEDLQP 375

Query: 301 FVAKDFSAVITG 312
           F A DF+  I G
Sbjct: 376 FSASDFAETIVG 387


>gi|225853372|ref|YP_002733605.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis ATCC 23457]
 gi|256112266|ref|ZP_05453187.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis bv. 3 str. Ether]
 gi|256263146|ref|ZP_05465678.1| cell division protein FtsY [Brucella melitensis bv. 2 str. 63/9]
 gi|225641737|gb|ACO01651.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis ATCC 23457]
 gi|263093049|gb|EEZ17199.1| cell division protein FtsY [Brucella melitensis bv. 2 str. 63/9]
 gi|326409935|gb|ADZ67000.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis M28]
 gi|326539648|gb|ADZ87863.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis M5-90]
          Length = 465

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 171/303 (56%), Positives = 224/303 (73%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + 
Sbjct: 161 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 220

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + RY KDV  + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IG
Sbjct: 221 LASGRYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 280

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A
Sbjct: 281 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 340

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QV
Sbjct: 341 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 400

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  
Sbjct: 401 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 460

Query: 310 ITG 312
           I G
Sbjct: 461 IAG 463


>gi|77165401|ref|YP_343926.1| cell division transporter substrate-binding protein FtsY
           [Nitrosococcus oceani ATCC 19707]
 gi|254433367|ref|ZP_05046875.1| signal recognition particle-docking protein FtsY [Nitrosococcus
           oceani AFC27]
 gi|76883715|gb|ABA58396.1| signal recognition particle-docking protein FtsY [Nitrosococcus
           oceani ATCC 19707]
 gi|207089700|gb|EDZ66971.1| signal recognition particle-docking protein FtsY [Nitrosococcus
           oceani AFC27]
          Length = 362

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 129/312 (41%), Positives = 196/312 (62%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
           S++  A E  S  ++L      T   L  GI D+ +  + +DD + EE+E  L+ +D+GV
Sbjct: 32  SSETGAGEKQSLFKRLRDRLGRTRGNLTGGIADLMLGKKSIDDELLEEIETQLLIADLGV 91

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              Q I+E+L  +   + +     L + + E + ++L P ++P     + +P VIL+VGV
Sbjct: 92  EATQAIIEDLTIRTSREQLQDAEALMEALRENMQELLTPCNQPLIIPAAIKPFVILMVGV 151

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+KK    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A
Sbjct: 152 NGVGKTTTIGKLAKKFQAEGRSVMLAAGDTFRAAAVEQLQVWGERNQVPVMAQHSGADSA 211

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + AQ + +DVLI DTAGRLH  + LM  + K+ RV+ +++PHAPH ++  +DA
Sbjct: 212 SVIFDAVQSAQVRGIDVLIADTAGRLHTQTNLMEELKKVKRVMGKVNPHAPHEIMLTVDA 271

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNAL Q   FH     TG+I+TK+DGTA+GG +  I     +P+ F+GVGEGI+DL 
Sbjct: 272 GTGQNALNQARQFHEAVDLTGIILTKLDGTAKGGVIFAIAKKMGLPIRFIGVGEGIDDLR 331

Query: 300 PFVAKDFSAVIT 311
           PF A++F   + 
Sbjct: 332 PFNAEEFVNALL 343


>gi|83592517|ref|YP_426269.1| signal recognition particle-docking protein FtsY [Rhodospirillum
           rubrum ATCC 11170]
 gi|83575431|gb|ABC21982.1| signal recognition particle-docking protein FtsY [Rhodospirillum
           rubrum ATCC 11170]
          Length = 506

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 145/316 (45%), Positives = 220/316 (69%), Gaps = 4/316 (1%)

Query: 3   NQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
            + VA    +S+  +L  G + TS KL  GI  ++S R+LDD   E+LEDLLI +DIGV 
Sbjct: 194 PEPVAEPVKVSFFARLRGGLSRTSGKLVGGIMGLVSERKLDDQALEDLEDLLITADIGVE 253

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            A K+   L  +R+ K+V+ + +    ++ I  +L P+++P   D S +PHV+LVVGVNG
Sbjct: 254 TAGKLTRSLAKERFGKNVTGEEIRGHFADEIATILGPVARPLEIDGSLKPHVVLVVGVNG 313

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGK++ ++     +V+LAAGDTFR+AA++QL+IW DRT  + +  + G+D+A L
Sbjct: 314 SGKTTTIGKIANQLVHENKRVLLAAGDTFRAAAVEQLRIWGDRTGCEVIARDTGADSAGL 373

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A ++A+A+  DVL+IDTAGRLHN + LM  + K++RVL+++DP  PH+ LQVLDAT 
Sbjct: 374 AFDALQKARAEGYDVLLIDTAGRLHNKTELMEELKKVVRVLRKIDPAVPHTCLQVLDATV 433

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA +QV++F  +   +GL+MTK+DGTA+GG ++ +     +PV+++G+GEGI+DL PF
Sbjct: 434 GQNAHQQVKVFQEMTDVSGLVMTKLDGTAKGGVVVALADKFGLPVHYVGIGEGIDDLRPF 493

Query: 302 VAKDFSAVITGCLDYG 317
            A+DF+    G +D  
Sbjct: 494 SARDFAR---GLMDLD 506


>gi|225628133|ref|ZP_03786168.1| signal recognition particle-docking protein FtsY [Brucella ceti
           str. Cudo]
 gi|260169358|ref|ZP_05756169.1| signal recognition particle-docking protein FtsY [Brucella sp.
           F5/99]
 gi|261758876|ref|ZP_06002585.1| cell division protein FtsY [Brucella sp. F5/99]
 gi|225616958|gb|EEH14005.1| signal recognition particle-docking protein FtsY [Brucella ceti
           str. Cudo]
 gi|261738860|gb|EEY26856.1| cell division protein FtsY [Brucella sp. F5/99]
          Length = 465

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 171/303 (56%), Positives = 225/303 (74%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + 
Sbjct: 161 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 220

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + RY KDVS + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IG
Sbjct: 221 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 280

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A
Sbjct: 281 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 340

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QV
Sbjct: 341 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 400

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  
Sbjct: 401 DIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 460

Query: 310 ITG 312
           I G
Sbjct: 461 IAG 463


>gi|170719541|ref|YP_001747229.1| signal recognition particle-docking protein FtsY [Pseudomonas
           putida W619]
 gi|169757544|gb|ACA70860.1| signal recognition particle-docking protein FtsY [Pseudomonas
           putida W619]
          Length = 514

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 129/304 (42%), Positives = 191/304 (62%), Gaps = 2/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68
              +  +L +G + TS  + EG+  +   ++ +DD + +E+E  L+ +D+GV     IV+
Sbjct: 205 KPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSTIVQ 264

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K   K ++    LY  + E +  +L P+ +P      ++P+VILVVGVNG GKTT 
Sbjct: 265 NLTQKVARKQLADADALYKSLQEELAALLRPVEQPLKIQAQNKPYVILVVGVNGAGKTTT 324

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A +
Sbjct: 325 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDAVQ 384

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ 
Sbjct: 385 AAKARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNAIS 444

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+     TGL +TK+DGTA+GG +  +     IP+ F+GVGEGI+DL  F A+ F 
Sbjct: 445 QAKYFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAEPFV 504

Query: 308 AVIT 311
             + 
Sbjct: 505 KALF 508


>gi|312114981|ref|YP_004012577.1| signal recognition particle-docking protein FtsY [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311220110|gb|ADP71478.1| signal recognition particle-docking protein FtsY [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 409

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 161/306 (52%), Positives = 221/306 (72%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               + W+++L +G   TS KL EGIT + + R+LDD   EELEDLLI+SD+G+AV+ ++
Sbjct: 102 EKPRVGWLQRLKQGLTKTSSKLTEGITGVFTKRKLDDDTLEELEDLLIQSDLGLAVSARV 161

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  L   RY  D+S + V   ++  + K+L P+++P   D S +P+V+L+VGVNG GKTT
Sbjct: 162 IAALKKARYNSDISPEEVRAILAAEVEKVLGPVAQPLEIDTSKKPYVVLMVGVNGTGKTT 221

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGK +K+ ++ GLKVMLAAGDTFR+AAI+QLK+W +RT A  V    G+DAA LA++A 
Sbjct: 222 TIGKYAKQFTEQGLKVMLAAGDTFRAAAIEQLKVWGERTGAPVVSGAQGADAAGLAFDAL 281

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+ +  D+LIIDTAGRL N + LMA + K+IRV++++DP APHSVL  LDATTGQNAL
Sbjct: 282 TRAKKEGADLLIIDTAGRLQNKTGLMAELEKIIRVIRKVDPEAPHSVLLTLDATTGQNAL 341

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVE+F   AG TGLIMTK+DGTARGG L+ I   H +PV+ +GVGE  +DL+ F A+DF
Sbjct: 342 SQVEIFGKTAGVTGLIMTKLDGTARGGILVAIAAKHGLPVHAIGVGESASDLQAFSAQDF 401

Query: 307 SAVITG 312
           +  I G
Sbjct: 402 ARAIAG 407


>gi|265991964|ref|ZP_06104521.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263003030|gb|EEZ15323.1| signal recognition particle-docking protein FtsY [Brucella
           melitensis bv. 1 str. Rev.1]
          Length = 463

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 170/303 (56%), Positives = 223/303 (73%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + 
Sbjct: 159 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 218

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L +  Y KDV  + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IG
Sbjct: 219 LASGHYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 278

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A
Sbjct: 279 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 338

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QV
Sbjct: 339 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 398

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  
Sbjct: 399 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 458

Query: 310 ITG 312
           I G
Sbjct: 459 IAG 461


>gi|182677358|ref|YP_001831504.1| signal recognition particle-docking protein FtsY [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633241|gb|ACB94015.1| signal recognition particle-docking protein FtsY [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 408

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 156/314 (49%), Positives = 214/314 (68%), Gaps = 1/314 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +   SW  +L  G + +S  +  G+ DI + R+LD+ + E+LED+LIR+D+G AVAQ+I
Sbjct: 95  EAPQGSWWTRLRDGLSRSSSSIGTGLVDIFTKRKLDEAMLEDLEDILIRADLGTAVAQRI 154

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            E +   RY  DV  + V   ++  + ++L P +KP   D + +P VILVVGVNG GKTT
Sbjct: 155 TEAVGKGRYNWDVDPREVKTILASEVEQVLTPYAKPLVIDTTKKPFVILVVGVNGSGKTT 214

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ + S  G KVMLAAGDTFR+AAI+QL+IW  R     +    GSDA+ LA++A 
Sbjct: 215 TIGKLAAQFSREGHKVMLAAGDTFRAAAIEQLQIWGQRLGCTVIARPQGSDASGLAFDAI 274

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K A+++  D+L++DTAGRL N + LM  + K+IRV+++ D  APH+VL VLDAT GQNAL
Sbjct: 275 KTARSEGADLLLMDTAGRLQNRAELMDELEKIIRVMRKQDEEAPHAVLLVLDATVGQNAL 334

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVE+F  VAG TGL+MTK+DGTARGG L+ I    K+P++F+GVGE ++DLEPF A DF
Sbjct: 335 NQVEIFGRVAGVTGLVMTKLDGTARGGILVAITEKFKLPIHFIGVGEKVDDLEPFAASDF 394

Query: 307 SAVITGCLDYGEEK 320
              I G  D  E +
Sbjct: 395 GLAIAGL-DKDESQ 407


>gi|256045538|ref|ZP_05448421.1| signal recognition particle receptor FTSY [Brucella melitensis bv.
           1 str. Rev.1]
 gi|260562848|ref|ZP_05833334.1| cell division protein FtsY [Brucella melitensis bv. 1 str. 16M]
 gi|260152864|gb|EEW87956.1| cell division protein FtsY [Brucella melitensis bv. 1 str. 16M]
          Length = 465

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 170/303 (56%), Positives = 223/303 (73%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + 
Sbjct: 161 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 220

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L +  Y KDV  + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IG
Sbjct: 221 LASGHYGKDVPGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 280

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A
Sbjct: 281 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDAWEKA 340

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QV
Sbjct: 341 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 400

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  
Sbjct: 401 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 460

Query: 310 ITG 312
           I G
Sbjct: 461 IAG 463


>gi|238789411|ref|ZP_04633197.1| Cell division protein ftsY [Yersinia frederiksenii ATCC 33641]
 gi|238722554|gb|EEQ14208.1| Cell division protein ftsY [Yersinia frederiksenii ATCC 33641]
          Length = 520

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 127/315 (40%), Positives = 194/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + +ELE+ L+ +D+GV 
Sbjct: 207 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFDELEEQLLIADVGVE 266

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 267 TTRKIITSLTEHASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 325

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A+
Sbjct: 326 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSAS 385

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 386 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 445

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL P
Sbjct: 446 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRP 505

Query: 301 FVAKDFSAVITGCLD 315
           F A DF   +    D
Sbjct: 506 FKADDFIEALFARED 520


>gi|13473652|ref|NP_105220.1| cell division protein FtsY [Mesorhizobium loti MAFF303099]
 gi|14024402|dbj|BAB51006.1| mlr4320 [Mesorhizobium loti MAFF303099]
          Length = 313

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 165/306 (53%), Positives = 224/306 (73%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +   SW +++  G A +S +L   I  + + R+LD+   ++LED+LIR+D+G+  A +I
Sbjct: 6   PAPRRSWFQRMRDGLARSSRELTGNIAGVFTKRKLDEDTLQDLEDVLIRADLGMETALRI 65

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            + L   RY KDVS   V   ++  + K+L P+++P   D SH+PHVILVVGVNG GKTT
Sbjct: 66  TDALAASRYGKDVSDTDVRTVMAAEVEKVLTPVARPLELDLSHKPHVILVVGVNGTGKTT 125

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ K++D GL VMLAAGDTFR+AAI+QLKIW +RT +  + S++G+DAA LAY+AF
Sbjct: 126 TIGKLAAKLTDGGLSVMLAAGDTFRAAAIEQLKIWGERTKSPVIASKLGADAAGLAYDAF 185

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+    DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ +DATTGQNAL
Sbjct: 186 EKAKEAGSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPEAPHTVLQTVDATTGQNAL 245

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVE+F  +AG  GL+MTK+DGTARGG L+ I   HK+PVYF+GVGE ++DLEPF A +F
Sbjct: 246 NQVEIFRNIAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEQVDDLEPFSASEF 305

Query: 307 SAVITG 312
           +  I G
Sbjct: 306 ARAIAG 311


>gi|254717993|ref|ZP_05179804.1| cell division protein FtsY [Brucella sp. 83/13]
 gi|265982939|ref|ZP_06095674.1| signal recognition particle-docking protein FtsY [Brucella sp.
           83/13]
 gi|306839772|ref|ZP_07472573.1| signal recognition particle-docking protein FtsY [Brucella sp. NF
           2653]
 gi|264661531|gb|EEZ31792.1| signal recognition particle-docking protein FtsY [Brucella sp.
           83/13]
 gi|306405127|gb|EFM61405.1| signal recognition particle-docking protein FtsY [Brucella sp. NF
           2653]
          Length = 475

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 170/303 (56%), Positives = 224/303 (73%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LSW  +L +G A +S  L + I  I + R+LDD   ++LED+LI++D+G+  A ++ + 
Sbjct: 171 KLSWFERLRRGLARSSSSLSDSIGGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 230

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + RY KDVS + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IG
Sbjct: 231 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 290

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+ +++A
Sbjct: 291 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSPVVSSKLGADAAGLAYDTWEKA 350

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QV
Sbjct: 351 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 410

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEG++DLEPF AKDF+  
Sbjct: 411 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGVDDLEPFAAKDFARA 470

Query: 310 ITG 312
           I G
Sbjct: 471 IAG 473


>gi|212711016|ref|ZP_03319144.1| hypothetical protein PROVALCAL_02085 [Providencia alcalifaciens DSM
           30120]
 gi|212686184|gb|EEB45712.1| hypothetical protein PROVALCAL_02085 [Providencia alcalifaciens DSM
           30120]
          Length = 601

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 193/309 (62%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++   +   +  +L KG   T   L  G   +   +++DD + +ELE+ L+ +D+GV   
Sbjct: 290 EQEKPKKEGFFSRLKKGLLKTRQNLGSGFLGLFKGKKIDDDLFDELEEQLLIADVGVETT 349

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI++ L      K++     LY  + E +  +L  + KP   +   +P+VIL+VGVNGV
Sbjct: 350 RKIIDNLTHHASRKELKDAEALYGKLREEMSDILSTVDKPLVIE-GKKPYVILMVGVNGV 408

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D A++ 
Sbjct: 409 GKTTTIGKLARQYQSEGKSVMLAAGDTFRAAAVEQLQVWGERNKISVVAQHTGADPASVI 468

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + AQAK  DVLI DTAGRL N + LM  + K++RV+K+LD  APH ++  LDA+TG
Sbjct: 469 YDAIQSAQAKGADVLIADTAGRLQNKAHLMEELKKIVRVMKKLDESAPHEIMLTLDASTG 528

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++G+GEGI DL PF 
Sbjct: 529 QNAVSQAKIFNDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRPFK 588

Query: 303 AKDFSAVIT 311
           A DF   + 
Sbjct: 589 ADDFIEALF 597


>gi|188582090|ref|YP_001925535.1| signal recognition particle-docking protein FtsY [Methylobacterium
           populi BJ001]
 gi|179345588|gb|ACB81000.1| signal recognition particle-docking protein FtsY [Methylobacterium
           populi BJ001]
          Length = 493

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 153/307 (49%), Positives = 206/307 (67%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +E   W  +LT G   TS  L + +T + + R+LD    E+LED LI++D GV  A ++
Sbjct: 184 GTEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETAMRM 243

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            E +   RY K +S   V   ++  I + L P++ P   D + +P+VIL VGVNG GKTT
Sbjct: 244 SEAVGKGRYEKGISPDEVRAILATEIERALEPVATPIAIDSAKKPYVILTVGVNGAGKTT 303

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKLS K    G  VMLAAGDTFR+AAI+QL++W +RT    +    GSDAA LA++AF
Sbjct: 304 TIGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGERTGTPVISRAQGSDAAGLAFDAF 363

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K+A+    DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL
Sbjct: 364 KEARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNAL 423

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVE+F   A  +GL+MTK+DGTARGG L+ +     +PV+F+GVGEG+ DLEPF A+DF
Sbjct: 424 SQVELFSQAAPVSGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVEDLEPFAARDF 483

Query: 307 SAVITGC 313
           +  ITG 
Sbjct: 484 ARAITGL 490


>gi|330812382|ref|YP_004356844.1| signal recognition particle receptor [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380490|gb|AEA71840.1| putative signal recognition particle receptor [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 477

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 125/307 (40%), Positives = 190/307 (61%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65
               + +  +L +G + TS  + EG+  +   ++ +DD + E++E  L+ +D+GV     
Sbjct: 165 EENKVGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDELLEDIETRLLTADVGVEATSV 224

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L  K   K ++    LY  +   +  +L P+ KP      ++P VILVVGVNG GK
Sbjct: 225 IIQSLTQKVARKQLTDADALYKSLQGELTSLLKPVEKPLVIASQNKPFVILVVGVNGAGK 284

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++
Sbjct: 285 TTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVIFD 344

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQN
Sbjct: 345 AVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQN 404

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+
Sbjct: 405 AINQAKQFNQTVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAE 464

Query: 305 DFSAVIT 311
            F   + 
Sbjct: 465 PFVQALF 471


>gi|183598034|ref|ZP_02959527.1| hypothetical protein PROSTU_01390 [Providencia stuartii ATCC 25827]
 gi|188022813|gb|EDU60853.1| hypothetical protein PROSTU_01390 [Providencia stuartii ATCC 25827]
          Length = 640

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 127/310 (40%), Positives = 195/310 (62%), Gaps = 2/310 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            ++   +   +  +L KG   T   L  G   + + +++DD + +ELE+ L+ +D+GV  
Sbjct: 328 TEQEKPKKEGFFARLKKGLLKTRQNLGSGFLGLFTGKKIDDDLFDELEEQLLIADVGVDT 387

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            +KI++ L      K++     LY  + E +  +L  + KP   +   +P+VIL+VGVNG
Sbjct: 388 TRKIIDNLTAHASRKELKDAEALYSKLREEMSDILAGVDKPLVIE-DKKPYVILMVGVNG 446

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D A++
Sbjct: 447 VGKTTTIGKLARQYQSEGKTVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADPASV 506

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+AK VDVLI DTAGRL N + LM  + K++RV+K+LD  APH ++  LDA+T
Sbjct: 507 IFDAIQSAKAKGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEEAPHEIMLTLDAST 566

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++G+GEGI DL PF
Sbjct: 567 GQNAVSQAKLFNDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRPF 626

Query: 302 VAKDFSAVIT 311
            A DF   + 
Sbjct: 627 KADDFIEALF 636


>gi|161619852|ref|YP_001593739.1| signal recognition particle-docking protein FtsY [Brucella canis
           ATCC 23365]
 gi|260567579|ref|ZP_05838049.1| cell division protein FtsY [Brucella suis bv. 4 str. 40]
 gi|161336663|gb|ABX62968.1| signal recognition particle-docking protein FtsY [Brucella canis
           ATCC 23365]
 gi|260157097|gb|EEW92177.1| cell division protein FtsY [Brucella suis bv. 4 str. 40]
          Length = 465

 Score =  331 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 172/303 (56%), Positives = 226/303 (74%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LSW  +L +G A +S  L + I+ I + R+LDD   ++LED+LI++D+G+  A ++ + 
Sbjct: 161 KLSWFERLRRGLARSSSSLSDSISGIFTKRKLDDDTLQDLEDVLIQADLGLETAMRVTDA 220

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + RY KDVS + V   +S  I K+L P++KP   D SH+PHVILVVGVNG GKTT IG
Sbjct: 221 LASGRYGKDVSGEEVRAIMSAEIEKVLAPVAKPLELDLSHKPHVILVVGVNGTGKTTTIG 280

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT +  V S++G+DAA LAY+A+++A
Sbjct: 281 KLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGERTGSSVVSSKLGADAAGLAYDAWEKA 340

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVLIIDTAGRL N + LM  + K++RVL + DP APH+VLQ LDATTGQNAL QV
Sbjct: 341 KEAGSDVLIIDTAGRLQNKAELMDELAKIVRVLGKHDPEAPHTVLQTLDATTGQNALNQV 400

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG  GL+MTK+DGTARGG L+ I   HK+P+YF+GVGEGI+DLEPF AKDF+  
Sbjct: 401 EIFKNVAGVNGLVMTKLDGTARGGILVAISARHKLPIYFIGVGEGIDDLEPFAAKDFARA 460

Query: 310 ITG 312
           I G
Sbjct: 461 IAG 463


>gi|218198435|gb|EEC80862.1| hypothetical protein OsI_23481 [Oryza sativa Indica Group]
          Length = 473

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 194/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV 
Sbjct: 160 AQEQERPTKEGFFARLKRSLLKTKQNLGSGFMGLFRGKKIDDDLFDELEEQLLIADVGVD 219

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + +P +    + P+VIL+VGVN
Sbjct: 220 TTRKIITSLTQHASRKQLKDAEALYGKLKEEMSEILAKVDQPLDVS-GNTPYVILMVGVN 278

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 279 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSAS 338

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 339 VIFDAVQAAKARGIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDDQAPHEVMLTLDAS 398

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL P
Sbjct: 399 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRP 458

Query: 301 FVAKDFSAVITGCLD 315
           F A DF   +    D
Sbjct: 459 FKADDFIEALFARED 473


>gi|145300820|ref|YP_001143661.1| cell division protein FtsY [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853592|gb|ABO91913.1| cell division protein FtsY [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 631

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 126/308 (40%), Positives = 194/308 (62%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +   +   +  +L +    T   +  G   + S +++DD + EELE  L+ +D+GV   +
Sbjct: 320 QDKPQREGFFARLKRSLVRTKENIGSGFFGLFSGKKIDDDLFEELETQLLTADLGVDTTR 379

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +I++ L+     K +     LY  + + +  ML  + +P   D S +P+VIL+VGVNGVG
Sbjct: 380 RIIDGLVQHADRKQLKDAEALYGLLKQDMGAMLAQVEQPLVIDTSKKPYVILMVGVNGVG 439

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ Y
Sbjct: 440 KTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIY 499

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+++  DVLI DTAGRL N S LM  + K++RV+K+LD  APH ++  LDA TGQ
Sbjct: 500 DAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEIMLTLDAGTGQ 559

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q ++F    G  G+++TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PFVA
Sbjct: 560 NALSQAKLFSEAVGLDGIVLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVA 619

Query: 304 KDFSAVIT 311
            DF   + 
Sbjct: 620 NDFIEALF 627


>gi|163852142|ref|YP_001640185.1| signal recognition particle-docking protein FtsY [Methylobacterium
           extorquens PA1]
 gi|163663747|gb|ABY31114.1| signal recognition particle-docking protein FtsY [Methylobacterium
           extorquens PA1]
          Length = 488

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 156/307 (50%), Positives = 206/307 (67%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            SE   W  +LT G   TS  L + +T + + R+LD    E+LED LI++D GV  A ++
Sbjct: 179 GSEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETAARM 238

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            E +   RY K +S   V   ++  I + L P++ P   D + +P+VIL VGVNG GKTT
Sbjct: 239 SEAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTT 298

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKLS K    G  VMLAAGDTFR+AAI+QL++W DRT    +    GSDAA LA++AF
Sbjct: 299 TIGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAF 358

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K+A+    DVL+IDTAGRL N + LMA + K++RV+++LDP APHS L VLDAT GQNAL
Sbjct: 359 KEARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHSTLLVLDATVGQNAL 418

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVE+F   A  +GL+MTK+DGTARGG L+ +     +PV+F+GVGEG+ DLEPF A+DF
Sbjct: 419 SQVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDF 478

Query: 307 SAVITGC 313
           +  ITG 
Sbjct: 479 ARAITGL 485


>gi|218530901|ref|YP_002421717.1| signal recognition particle-docking protein FtsY [Methylobacterium
           chloromethanicum CM4]
 gi|218523204|gb|ACK83789.1| signal recognition particle-docking protein FtsY [Methylobacterium
           chloromethanicum CM4]
          Length = 488

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 155/307 (50%), Positives = 206/307 (67%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            SE   W  +LT G   TS  L + +T + + R+LD    E+LED LI++D GV  A ++
Sbjct: 179 GSEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETATRM 238

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            E +   RY K +S   V   ++  I + L P++ P   D + +P+VIL VGVNG GKTT
Sbjct: 239 SEAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTT 298

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKLS K    G  VMLAAGDTFR+AAI+QL++W DRT    +    GSDAA LA++AF
Sbjct: 299 TIGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAF 358

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K+A+    DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL
Sbjct: 359 KEARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNAL 418

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVE+F   A  +GL+MTK+DGTARGG L+ +     +PV+F+GVGEG+ DLEPF A+DF
Sbjct: 419 SQVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDF 478

Query: 307 SAVITGC 313
           +  ITG 
Sbjct: 479 ARAITGL 485


>gi|240139474|ref|YP_002963949.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein [Methylobacterium extorquens AM1]
 gi|240009446|gb|ACS40672.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein [Methylobacterium extorquens AM1]
          Length = 488

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 155/307 (50%), Positives = 206/307 (67%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            SE   W  +LT G   TS  L + +T + + R+LD    E+LED LI++D GV  A ++
Sbjct: 179 GSEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETATRM 238

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            E +   RY K +S   V   ++  I + L P++ P   D + +P+VIL VGVNG GKTT
Sbjct: 239 SEAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTT 298

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKLS K    G  VMLAAGDTFR+AAI+QL++W DRT    +    GSDAA LA++AF
Sbjct: 299 TIGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAF 358

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K+A+    DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL
Sbjct: 359 KEARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNAL 418

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVE+F   A  +GL+MTK+DGTARGG L+ +     +PV+F+GVGEG+ DLEPF A+DF
Sbjct: 419 SQVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDF 478

Query: 307 SAVITGC 313
           +  ITG 
Sbjct: 479 ARAITGL 485


>gi|313501087|gb|ADR62453.1| Signal recognition particle-docking protein FtsY [Pseudomonas
           putida BIRD-1]
          Length = 372

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 131/311 (42%), Positives = 193/311 (62%), Gaps = 2/311 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65
                 +  +L +G + TS  + EG+  +   ++ +DD + +E+E  L+ +D+GV     
Sbjct: 62  EQAKPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSA 121

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           IV+ L  K   K ++    LY  + E +  +L P+ +P N    ++P+VILVVGVNG GK
Sbjct: 122 IVQNLTQKVARKQLADADALYKSLQEELAALLRPVEQPLNVQAQNKPYVILVVGVNGAGK 181

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++
Sbjct: 182 TTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFD 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+A+ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQN
Sbjct: 242 AVQAAKARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQN 301

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q + F+     TGL +TK+DGTA+GG +  +     IP+ F+GVGEGI+DL  F A+
Sbjct: 302 AISQAKYFNQSVELTGLALTKLDGTAKGGVIFALAKQFNIPIRFIGVGEGIDDLRTFEAE 361

Query: 305 DFSAVITGCLD 315
            F   +    D
Sbjct: 362 PFVKALFAERD 372


>gi|300024820|ref|YP_003757431.1| signal recognition particle-docking protein FtsY [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526641|gb|ADJ25110.1| signal recognition particle-docking protein FtsY [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 390

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 156/301 (51%), Positives = 210/301 (69%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            W +KL  G   TS KL  GITD+ S R+LD    ++LEDLLI++D+G+A   +I + + 
Sbjct: 89  GWFQKLKSGLGKTSAKLTSGITDLFSKRKLDAATLDDLEDLLIQADLGIATTGRITDAIG 148

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             R+ K +S   V   +S  + ++L P++KP   D + +PHVI++VGVNG GKTT IGKL
Sbjct: 149 KGRFEKGISADEVRAILSSEVERVLKPVAKPLEVDAARKPHVIMMVGVNGTGKTTTIGKL 208

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K+   G  V+LAAGDTFR+AAIDQLK+W +RT    V  ++G DA+ LA++A KQAQ 
Sbjct: 209 AQKLKAEGKSVVLAAGDTFRAAAIDQLKVWGERTGCPVVARQVGEDASGLAFDALKQAQG 268

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL N   LM  + K+IRVLK+LD  APH V+ VLDATTGQNAL+QVE+
Sbjct: 269 TGADVLLLDTAGRLQNKQALMEELEKVIRVLKKLDSTAPHDVILVLDATTGQNALQQVEV 328

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   AG TGL+MTK+DGTARGG L+ I     +PV+ +GVGEG +DL+PF A +F+  I 
Sbjct: 329 FRDRAGVTGLVMTKLDGTARGGILVAIADKFGLPVHAIGVGEGADDLQPFEAAEFARAIA 388

Query: 312 G 312
           G
Sbjct: 389 G 389


>gi|254561888|ref|YP_003068983.1| fused Signal Recognition Particle [Methylobacterium extorquens DM4]
 gi|254269166|emb|CAX25132.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein [Methylobacterium extorquens DM4]
          Length = 488

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 155/307 (50%), Positives = 206/307 (67%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            SE   W  +LT G   TS  L + +T + + R+LD    E+LED LI++D GV  A ++
Sbjct: 179 GSEKQGWWSRLTAGMRRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGVETATRM 238

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            E +   RY K +S   V   ++  I + L P++ P   D + +P+VIL VGVNG GKTT
Sbjct: 239 SEAVGKGRYEKGISPDEVRAILATEIERALEPVALPIEIDSAKKPYVILTVGVNGAGKTT 298

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKLS K    G  VMLAAGDTFR+AAI+QL++W DRT    +    GSDAA LA++AF
Sbjct: 299 TIGKLSLKFKAEGRSVMLAAGDTFRAAAIEQLRVWGDRTGTPVISRAQGSDAAGLAFDAF 358

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K+A+    DVL+IDTAGRL N + LMA + K++RV+++LDP APH+ L VLDAT GQNAL
Sbjct: 359 KEARENGTDVLLIDTAGRLQNKAGLMAELEKIVRVIRKLDPEAPHATLLVLDATVGQNAL 418

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVE+F   A  +GL+MTK+DGTARGG L+ +     +PV+F+GVGEG+ DLEPF A+DF
Sbjct: 419 SQVELFSQAAPVSGLVMTKLDGTARGGILVALATKFGLPVHFIGVGEGVEDLEPFAARDF 478

Query: 307 SAVITGC 313
           +  ITG 
Sbjct: 479 ARAITGL 485


>gi|85710834|ref|ZP_01041895.1| Signal recognition particle GTPase [Idiomarina baltica OS145]
 gi|85695238|gb|EAQ33175.1| Signal recognition particle GTPase [Idiomarina baltica OS145]
          Length = 426

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 133/311 (42%), Positives = 200/311 (64%), Gaps = 1/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +   ++      +LT+G   TS  +  G+  +   +++DD + EELE  L+ +D+GV 
Sbjct: 109 TPEAAPAKKKGLWARLTEGLKRTSGSIGSGLFGVFKGKKIDDDLFEELETQLLMADLGVK 168

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              KI++ L  +   K +     LY++  E +  +L P+ KP   D S  P+VILV GVN
Sbjct: 169 TTTKIIDNLTQQADRKQLKDAEALYELLQEQMEALLEPVDKPLAIDTSKTPYVILVTGVN 228

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+K+    G  VMLAAGDTFR+AA++QL+IW +R     +  + GSD+A+
Sbjct: 229 GVGKTTTIGKLAKQFKREGKSVMLAAGDTFRAAAVEQLQIWGERNEIPVIAQQTGSDSAS 288

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+ DP APH V+  LDA 
Sbjct: 289 VLFDAMQAAKARGIDVLIADTAGRLQNKSNLMEELKKIVRVMKKQDPEAPHEVMLTLDAG 348

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F    G +G++MTK+DGTA+GG +  +    KIP+ ++GVGE ++DL P
Sbjct: 349 TGQNAISQAKLFTEAVGVSGIVMTKLDGTAKGGVIFAVADEFKIPIRYIGVGEQLDDLRP 408

Query: 301 FVAKDFSAVIT 311
           FVA+DF   + 
Sbjct: 409 FVARDFIQALF 419


>gi|121602701|ref|YP_988356.1| signal recognition particle-docking protein FtsY [Bartonella
           bacilliformis KC583]
 gi|120614878|gb|ABM45479.1| signal recognition particle-docking protein FtsY [Bartonella
           bacilliformis KC583]
          Length = 387

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 158/312 (50%), Positives = 222/312 (71%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +    V  + ++W  +L  G + +S +L   I  + + R+L+    +ELED+LI++D+GV
Sbjct: 73  LPTPPVEQKEVAWFERLKHGLSRSSQQLGGSIGALFTKRKLNADTLQELEDILIQADLGV 132

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A  I + L + RY K++S+  +   V++ I K+L P++ P   D S++PHVIL VGVN
Sbjct: 133 ETASHITDILSSGRYGKNLSLDDIHTIVADEIKKVLEPVAIPLELDLSYKPHVILFVGVN 192

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++  GLKVMLAAGDTFR+AAI+QL IW +RT A  V ++ G+DAA+
Sbjct: 193 GTGKTTTIGKLAAKLTSNGLKVMLAAGDTFRAAAIEQLHIWGERTGAPVVSTQSGADAAS 252

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA+EA+++A+    DVLIIDTAGRL N + LM  + K+IRVL++ DP APH++LQ LDAT
Sbjct: 253 LAFEAYEKAKKANNDVLIIDTAGRLQNKTELMDELAKIIRVLRKHDPQAPHTILQTLDAT 312

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV++F  +AG  GL+MTK+DGTARGG L+ +   +K+PVYF+G+GE   DLEP
Sbjct: 313 TGQNALNQVDIFRNIAGVNGLVMTKLDGTARGGILVALAAKYKLPVYFIGIGENTEDLEP 372

Query: 301 FVAKDFSAVITG 312
           F A DF+  ITG
Sbjct: 373 FSASDFAQAITG 384


>gi|227329287|ref|ZP_03833311.1| cell division protein FtsY [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 488

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 124/316 (39%), Positives = 194/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV
Sbjct: 174 VAQEQERPTKEGFFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLVADVGV 233

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      + +     L+  + E + ++L  +  P N +    P+VIL+VGV
Sbjct: 234 ETTRKIIGSLTEHASRRQLKDADTLFVKLKEEMAEILAKVDAPLNIE-GKTPYVILMVGV 292

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGK++++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A
Sbjct: 293 NGVGKTTTIGKMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSA 352

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA
Sbjct: 353 SVIFDAIQAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDA 412

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL 
Sbjct: 413 STGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLR 472

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 473 PFKADDFIEALFARED 488


>gi|308188478|ref|YP_003932609.1| Cell division protein ftsY [Pantoea vagans C9-1]
 gi|308058988|gb|ADO11160.1| Cell division protein ftsY [Pantoea vagans C9-1]
          Length = 564

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 122/313 (38%), Positives = 188/313 (60%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   
Sbjct: 253 EQERPSKEGFFSRLKRSLVKTRQNLGSGFISLFRGKKIDDDLFDELEEQLLIADVGVDTT 312

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           ++I+  L  +   K +     LY  +   +  +L  +  P +      P VIL+VGVNGV
Sbjct: 313 RRIITNLTQQANRKQLRDAEALYGLLKAEMASILAKVDAPLDVS-GKTPFVILMVGVNGV 371

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 372 GKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 431

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+++ VDVLI DTAGRL N S LM  + K+ RV+K+LD  APH V+  LDA+TG
Sbjct: 432 FDAIQAAKSRGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDSAPHEVMLTLDASTG 491

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q  +F+   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF 
Sbjct: 492 QNAVSQARLFNEAVGLTGIALTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFK 551

Query: 303 AKDFSAVITGCLD 315
           A+DF   +    D
Sbjct: 552 AEDFIEALFARED 564


>gi|260469862|ref|ZP_05814009.1| signal recognition particle-docking protein FtsY [Mesorhizobium
           opportunistum WSM2075]
 gi|259028368|gb|EEW29697.1| signal recognition particle-docking protein FtsY [Mesorhizobium
           opportunistum WSM2075]
          Length = 326

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 164/311 (52%), Positives = 225/311 (72%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +     +   SW +++  G A +S +L   I  + + R+LD+   ++LED+LIR+D+G+ 
Sbjct: 14  AKAPEPAPRRSWFQRMRDGLARSSRELTGNIAGVFTKRKLDEDTLQDLEDVLIRADLGME 73

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            A ++ + L + RY KDVS   V   ++  + K+L  ++ P   D SH+PHVILVVGVNG
Sbjct: 74  TALRVTDALASSRYGKDVSDTEVRAIMAAEVEKVLTHVAMPLELDLSHKPHVILVVGVNG 133

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+ K++D GL VMLAAGDTFR+AAI+QLKIW +RT++  + S++G+DAA L
Sbjct: 134 TGKTTTIGKLAAKLTDGGLSVMLAAGDTFRAAAIEQLKIWGERTNSPVIASKLGADAAGL 193

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+AF++A+    DVLIIDTAGRL N + LMA + K++RVL +LDP APH+VLQ +DATT
Sbjct: 194 AYDAFERAKEAGSDVLIIDTAGRLQNKTELMAELEKIVRVLGKLDPEAPHTVLQTVDATT 253

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL QVE+F  VAG  GL+MTK+DGTARGG L+ I   HK+PVYF+GVGE ++DLEPF
Sbjct: 254 GQNALNQVEIFRNVAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEQVDDLEPF 313

Query: 302 VAKDFSAVITG 312
            A +F+  I G
Sbjct: 314 SASEFARAIAG 324


>gi|304397880|ref|ZP_07379756.1| signal recognition particle-docking protein FtsY [Pantoea sp. aB]
 gi|304354591|gb|EFM18962.1| signal recognition particle-docking protein FtsY [Pantoea sp. aB]
          Length = 566

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 122/313 (38%), Positives = 187/313 (59%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   
Sbjct: 255 EQERPSKEGFFARLKRSLVKTRQNLGSGFISLFRGKKIDDDLFDELEEQLLIADVGVDTT 314

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           ++I+  L  +   K +     LY  +   +  +L  +  P        P VIL+VGVNGV
Sbjct: 315 RRIITHLTQQANRKQLRDAEALYGLLKAEMASILANVDAPLEVS-GKTPFVILMVGVNGV 373

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 374 GKTTTIGKLARQYQAEGKTVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 433

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+++ VDVLI DTAGRL N S LM  + K+ RV+K+LD  APH V+  LDA+TG
Sbjct: 434 FDAIQAAKSRGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDSAPHEVMLTLDASTG 493

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q  +F+   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF 
Sbjct: 494 QNAVSQARLFNEAVGVTGIALTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRPFK 553

Query: 303 AKDFSAVITGCLD 315
           A+DF   +    D
Sbjct: 554 AEDFIEALFARED 566


>gi|319404905|emb|CBI78506.1| cell division protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 413

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 153/312 (49%), Positives = 221/312 (70%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S   V  +  +W  +L KG + +S +L + I  +   ++LD+   +ELED+LI++D+G+
Sbjct: 99  LSALTVEQKKAAWFERLKKGLSRSSQQLSDSIGTLFVKKKLDENTLQELEDILIQADLGI 158

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               +I++ L T+ Y K++S + +   V+  I K+L P++ P   D +H+PHVIL+VGVN
Sbjct: 159 ETTTRIIDILSTRYYEKNLSPKDIYTIVTNEIKKVLEPIAFPLEIDLNHKPHVILLVGVN 218

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++  GLKVML AGDTFR+AA++QL IW +R  A    +++G+DAA+
Sbjct: 219 GTGKTTTIGKLAAKLTMGGLKVMLVAGDTFRAAAVEQLHIWGERAKAPVFSTKLGADAAS 278

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++A+++A+ +  DVL+IDTAGRL N   LM  + K+IRVL + +P APH+VLQ LDA+
Sbjct: 279 LAFDAYEKAKKENYDVLLIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDAS 338

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV +F  +AG  GL+MTK+DGTARGG L+ I   HKIPV+F+GVGE + DLEP
Sbjct: 339 TGQNALNQVNVFRDIAGVNGLVMTKLDGTARGGILVAIASKHKIPVHFIGVGENVEDLEP 398

Query: 301 FVAKDFSAVITG 312
           F A DF+  I G
Sbjct: 399 FSASDFAEAIIG 410


>gi|170751708|ref|YP_001757968.1| signal recognition particle-docking protein FtsY [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658230|gb|ACB27285.1| signal recognition particle-docking protein FtsY [Methylobacterium
           radiotolerans JCM 2831]
          Length = 466

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 151/309 (48%), Positives = 203/309 (65%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +   E+  W  +LT G   TS  L + +T + + R+LD    E+LED LI++D G+  A 
Sbjct: 155 EREPEAKGWWSRLTSGMKRTSSALSDRVTGLFTKRKLDATTLEDLEDALIQADFGLETAM 214

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++ E +   RY K +S   V   ++  + + L P++ P   D + +P VIL VGVNG GK
Sbjct: 215 RVSEAVGKGRYEKGISPDEVRAILAAEVERALEPVAVPLTIDAARKPFVILTVGVNGAGK 274

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT +GKL+ K+   G  VMLAAGDTFR+AAIDQLK+W  RT    V    G+DAA LA++
Sbjct: 275 TTTLGKLASKLRAEGRTVMLAAGDTFRAAAIDQLKVWGARTGTPVVSGAQGADAAGLAFD 334

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A KQA A   DVL+IDTAGRL N + LMA + K++RVL++ DP APH+ L VLDAT GQN
Sbjct: 335 ALKQAGAAGTDVLLIDTAGRLQNKAGLMAELEKIVRVLRKQDPDAPHATLLVLDATVGQN 394

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QVE+F   A  +GL+MTK+DGTARGG L+ +     +PV+F+GVGEG+ DLEPF A+
Sbjct: 395 ALSQVELFSQAAPVSGLVMTKLDGTARGGILVALAAKFGLPVHFIGVGEGVEDLEPFAAR 454

Query: 305 DFSAVITGC 313
           DF+  I G 
Sbjct: 455 DFARAIAGL 463


>gi|256823779|ref|YP_003147742.1| signal recognition particle-docking protein FtsY [Kangiella
           koreensis DSM 16069]
 gi|256797318|gb|ACV27974.1| signal recognition particle-docking protein FtsY [Kangiella
           koreensis DSM 16069]
          Length = 427

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 130/311 (41%), Positives = 205/311 (65%), Gaps = 4/311 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
            +E   +  +L  G + T  +L + + ++ + S+ +DD + E++E  L+ +D+GV+  +K
Sbjct: 115 PAEKQGFFSRLKAGLSRTRGQLADSLANLVLGSKEIDDDLLEDIETQLLMADVGVSATRK 174

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I+++L  K   K++   + L D + +L+ +++ P ++P   + +H+P VIL+VGVNGVGK
Sbjct: 175 IIDDLTDKAARKELKDPQALMDRLRQLLSEIIEPCTQPL--ELTHKPFVILMVGVNGVGK 232

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK    G  VMLAAGDTFR+AA++QL++W +R +        G+D+A++ ++
Sbjct: 233 TTTIGKLAKKFQGEGKSVMLAAGDTFRAAAVEQLQVWGERNNIHVTAQHTGADSASVIFD 292

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + AQA+K+DVLI DTAGRLH  S LM  + K+ RV+++LDP APH V+ V+DA TGQN
Sbjct: 293 ALQAAQARKIDVLIADTAGRLHTKSNLMDELSKVQRVMQKLDPSAPHEVMLVVDAGTGQN 352

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q E F+     +G+ +TK+DGTA+GG +  +    K P+ F+GVGEGI+DL  F  +
Sbjct: 353 ALNQAEHFNKAVPLSGITITKLDGTAKGGIIFALADKMKTPIRFIGVGEGIDDLREFNGQ 412

Query: 305 DFSAVITGCLD 315
           DF   +    D
Sbjct: 413 DFIQALFATDD 423


>gi|217979345|ref|YP_002363492.1| signal recognition particle-docking protein FtsY [Methylocella
           silvestris BL2]
 gi|217504721|gb|ACK52130.1| signal recognition particle-docking protein FtsY [Methylocella
           silvestris BL2]
          Length = 483

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 146/307 (47%), Positives = 209/307 (68%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            S    W  +L +G A +S  +  G+  I + R+LD  + +ELE++LIR+D+GVA A  I
Sbjct: 169 ESAPKGWWTRLRQGLARSSDSIGSGLKAIFTKRKLDAAMLDELEEVLIRADLGVATATHI 228

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
              +   RY K + V  V   ++E + ++L P ++P   D + +P VILVVGVNG GKTT
Sbjct: 229 AGLVGKGRYDKSIEVDEVKTILAEEVERVLAPYARPLEIDPAIKPFVILVVGVNGSGKTT 288

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ + S  G KV+LAAGDTFR+AAI+QL++W DR +   +    GSDA+ALA++A 
Sbjct: 289 TIGKLAAQFSQEGRKVLLAAGDTFRAAAIEQLRLWGDRLNCAVIAGNQGSDASALAFDAI 348

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+    D+LI+DTAGRL N + LMA + K++RV+K+++P APH+VL VLDAT GQNA+
Sbjct: 349 RAARESGADILIMDTAGRLQNRAELMAELEKIVRVMKKVEPAAPHAVLLVLDATVGQNAV 408

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q E+F  VAG TGL+MTK+DGTARGG L+ +    ++P++++GVGE   DL PF A+DF
Sbjct: 409 SQTEIFSKVAGVTGLVMTKLDGTARGGILVALAEKFQLPIHYVGVGETAADLAPFAARDF 468

Query: 307 SAVITGC 313
           +  I G 
Sbjct: 469 ARAIAGL 475


>gi|117620356|ref|YP_854900.1| cell division protein FtsY [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561763|gb|ABK38711.1| cell division protein FtsY [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 633

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 127/308 (41%), Positives = 193/308 (62%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +   +   +  +L +    T   +  G   +   +++DD + EELE  L+ +D+GV    
Sbjct: 322 QEKPQREGFFARLKRSLVRTRENIGSGFFGLFRGKKIDDELFEELETQLLTADLGVDTTS 381

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +I+E L+     K +     LY  + + + +ML  + +P   D S +P+VIL+VGVNGVG
Sbjct: 382 RIIEGLVQHADRKQLKDAEALYGLLKQDMGEMLAKVEQPLVIDTSKKPYVILMVGVNGVG 441

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ Y
Sbjct: 442 KTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIY 501

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+++  DVLI DTAGRL N S LM  + K++RV+K+LD  APH ++  LDA TGQ
Sbjct: 502 DAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDDAAPHEIMLTLDAGTGQ 561

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q ++F    G TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PFVA
Sbjct: 562 NALSQAKLFSEAVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVA 621

Query: 304 KDFSAVIT 311
            DF   + 
Sbjct: 622 NDFIEALF 629


>gi|242241271|ref|YP_002989452.1| signal recognition particle-docking protein FtsY [Dickeya dadantii
           Ech703]
 gi|242133328|gb|ACS87630.1| signal recognition particle-docking protein FtsY [Dickeya dadantii
           Ech703]
          Length = 432

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 187/313 (59%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   
Sbjct: 121 EQERPTKEGFFARLKRSLVKTRQNLGSGFVGLFRGKKIDDDLFDELEEQLLIADVGVETT 180

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+E L      K +     L   +   +  +L    +P   +    P VIL+VGVNGV
Sbjct: 181 RKIIERLTEHADRKQLKDADALLSLLKTEMSGILAKADEPLVIE-GKTPFVILMVGVNGV 239

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ 
Sbjct: 240 GKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVVAQHTGADSASVI 299

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+TG
Sbjct: 300 FDAIQAAKARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDDDAPHEVMLTLDASTG 359

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q  +F    G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI+DL PF 
Sbjct: 360 QNAVSQARLFDEAVGLTGIALTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIDDLRPFK 419

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 420 ADDFIEALFARED 432


>gi|56459337|ref|YP_154618.1| Signal recognition particle GTPase [Idiomarina loihiensis L2TR]
 gi|56178347|gb|AAV81069.1| Signal recognition particle GTPase [Idiomarina loihiensis L2TR]
          Length = 449

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 134/308 (43%), Positives = 198/308 (64%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K   E   +  +LT+G   TS  +  G+  +   +++DD + EELE  L+ +D+GVA   
Sbjct: 129 KEKGEKKGFWARLTQGLRRTSGSIGSGLIGVFRGKKIDDDLFEELETQLLMADLGVATTT 188

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI++ L  +   K +     LY++  E + ++L P+ K      S  P+VIL+ GVNGVG
Sbjct: 189 KIIDNLTKQADRKQLKDAEALYELLQEQLAEILKPVDKRLEIPESDSPYVILMTGVNGVG 248

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 249 KTTTIGKLAKQFKAEGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVLY 308

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ VDVLI DTAGRL N + LM  + K++RV+K+LDP APH V+  LDA TGQ
Sbjct: 309 DALQAAKARDVDVLIADTAGRLQNKANLMEELKKLVRVMKKLDPEAPHEVMLTLDAGTGQ 368

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F    G +G++MTK+DGTA+GG +  +     IP+ ++GVGE + DL PFVA
Sbjct: 369 NAISQAKLFTEAVGVSGIVMTKLDGTAKGGVIFAVADQFAIPIRYIGVGESLEDLRPFVA 428

Query: 304 KDFSAVIT 311
           KDF A + 
Sbjct: 429 KDFIAALF 436


>gi|319407865|emb|CBI81518.1| cell division protein [Bartonella sp. 1-1C]
          Length = 413

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 153/312 (49%), Positives = 223/312 (71%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S   +  +  +W  +L KG + +S +L + I  +   ++LD+   +ELED+LI++D+G+
Sbjct: 99  LSTLTIEQKKAAWFERLKKGLSRSSQQLSDSIGTLFVKQKLDENTLQELEDVLIQADLGI 158

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               +I++ L T+ Y K++S + +   V++ I K+L P++ P   D +H+PHVIL+VGVN
Sbjct: 159 ETTTRIIDILSTRYYEKNLSPKDIYAIVTDEIKKVLEPIAFPLEIDLNHKPHVILLVGVN 218

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++  GLKVML AGDTFR+AA++QL IW +RT A    +++G+DAA+
Sbjct: 219 GTGKTTTIGKLAAKLTMGGLKVMLVAGDTFRAAAVEQLHIWGERTKAPVFSTKLGADAAS 278

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++A+++A+ +  DVL+IDTAGRL N   LM  + K+IRVL + +P APH+VLQ LDA+
Sbjct: 279 LAFDAYEKAKKEGYDVLLIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDAS 338

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV +F  +AG  GL+MTK+DGTARGG L+ I   HKIPV+F+GVGE + DLEP
Sbjct: 339 TGQNALNQVNVFRDIAGVNGLVMTKLDGTARGGILVAIASKHKIPVHFIGVGENVEDLEP 398

Query: 301 FVAKDFSAVITG 312
           F A DF+  I G
Sbjct: 399 FSASDFAEAIIG 410


>gi|332995325|gb|AEF05380.1| signal recognition particle GTPase [Alteromonas sp. SN2]
          Length = 530

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 129/320 (40%), Positives = 197/320 (61%), Gaps = 6/320 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
               E  S   +L +  + T   L  G+  +   + +DD + E+LE  L+ +D+G+   Q
Sbjct: 211 PAPKEKKSLFSRLKESLSRTKANLGSGLVSLFKGKAIDDELYEDLETQLLVADVGMDTTQ 270

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS-----HRPHVILVVG 118
           KI+  L      KD+     L D + + +  ML  +++P +   +       P VIL+VG
Sbjct: 271 KIITHLTDSASRKDLKDAEALLDILKQQMAGMLSKVNEPLSDAINAHNSDEGPFVILMVG 330

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R S   +    G+D+
Sbjct: 331 VNGVGKTTTIGKLAKQFQQQGKKVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADS 390

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+A + A+++K D+LI DTAGRL N   LM  + K++RV+K+L+P+APH V+  LD
Sbjct: 391 ASVLYDALEAAKSRKTDILIADTAGRLQNKDNLMEELKKVVRVMKKLNPNAPHEVMLTLD 450

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI+DL
Sbjct: 451 AGTGQNAISQAKLFNQAVGLTGITLTKLDGTAKGGVIFSIADKFGIPIRYIGVGEGIDDL 510

Query: 299 EPFVAKDFSAVITGCLDYGE 318
             F  ++F   +   +D GE
Sbjct: 511 RQFDGQEFIDALFSEIDSGE 530


>gi|289672445|ref|ZP_06493335.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. syringae FF5]
          Length = 339

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 128/304 (42%), Positives = 191/304 (62%), Gaps = 2/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68
            + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV     I++
Sbjct: 30  KVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIK 89

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K   K ++  + LY  +   +  ML P+ +P      HRP VILVVGVNG GKTT 
Sbjct: 90  SLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHRPFVILVVGVNGAGKTTT 149

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A +
Sbjct: 150 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQ 209

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ 
Sbjct: 210 AAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAIN 269

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F 
Sbjct: 270 QAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPFV 329

Query: 308 AVIT 311
             + 
Sbjct: 330 QALF 333


>gi|330891336|gb|EGH23997.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 354

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 195/310 (62%), Gaps = 2/310 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           Q+  +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV  
Sbjct: 39  QEPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLPADVGVEA 98

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG
Sbjct: 99  TSVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNG 158

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++
Sbjct: 159 AGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASV 218

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA T
Sbjct: 219 IFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGT 278

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P++++GVGEGI+DL  F
Sbjct: 279 GQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIHYIGVGEGIDDLRTF 338

Query: 302 VAKDFSAVIT 311
            A+ F   + 
Sbjct: 339 EAEPFVQALF 348


>gi|227113848|ref|ZP_03827504.1| cell division protein FtsY [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 503

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 124/316 (39%), Positives = 194/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV
Sbjct: 189 VAQEQERPTKEGFFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLVADVGV 248

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      + +     L+  + E + ++L  +  P N +    P+VIL+VGV
Sbjct: 249 ETTRKIITSLTEHASRRQLKDADTLFVKLKEEMAEILAKVDAPLNIE-GKTPYVILMVGV 307

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGK++++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A
Sbjct: 308 NGVGKTTTIGKMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSA 367

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA
Sbjct: 368 SVIFDAIQAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDA 427

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL 
Sbjct: 428 STGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLR 487

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 488 PFKADDFIEALFARED 503


>gi|50123266|ref|YP_052433.1| cell division protein FtsY [Pectobacterium atrosepticum SCRI1043]
 gi|49613792|emb|CAG77243.1| cell division protein [Pectobacterium atrosepticum SCRI1043]
          Length = 469

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 193/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV   
Sbjct: 158 EQERPTKEGFFARLKRSLVKTRENLGSGFIGLFRGKKIDDDLFDELEEQLLIADVGVETT 217

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI++ L      + +     L+  + E + ++L  +  P N +    P+VIL+VGVNGV
Sbjct: 218 RKIIDSLTEHASRRQLKDADTLFVKLKEEMAEILAKVDVPLNIE-GKTPYVILMVGVNGV 276

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGK++++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 277 GKTTTIGKMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVPVIAQHTGADSASVI 336

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TG
Sbjct: 337 FDAIQAAKARGVDVLIADTAGRLQNKAYLMEELKKIVRVMKKLDEDAPHEVMLTLDASTG 396

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 397 QNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLRPFK 456

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 457 ADDFIEALFARED 469


>gi|307546425|ref|YP_003898904.1| signal recognition particle receptor [Halomonas elongata DSM 2581]
 gi|307218449|emb|CBV43719.1| K03110 signal recognition particle receptor [Halomonas elongata DSM
           2581]
          Length = 455

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 128/311 (41%), Positives = 188/311 (60%), Gaps = 3/311 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62
           +K   E   W  ++  G   T   L +G+  +    +++DD + EELE  L+ +D+G+  
Sbjct: 138 EKPRGEKKGWFARIKDGLGKTRANLTDGLAGLFLGRKQIDDDLMEELETQLLMADVGIEA 197

Query: 63  AQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVN 120
             +I++ L  +   K++     L   + E +  +L  +++P         P VILVVGVN
Sbjct: 198 TTEIIDRLTERVSRKELKDPEALFKALQEELASLLDGVTQPLELPPKGEGPFVILVVGVN 257

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QLK+W +R S   V    G+D+A+
Sbjct: 258 GVGKTTTIGKLTQRFQREGRSVMLAAGDTFRAAAVEQLKVWGERNSVPVVAQHTGADSAS 317

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A   A+A+ VDVLI DTAGRLHN S LM  + K+ RV+ +LD  APH V+ VLDA 
Sbjct: 318 VVYDALAAARARGVDVLIADTAGRLHNKSHLMEELKKVRRVMGKLDADAPHEVMLVLDAG 377

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q   F+     TG+ +TK+DGTA+GG +  +      P+ F+GVGE ++DL P
Sbjct: 378 TGQNALSQASTFNEAVPVTGITLTKLDGTAKGGIIFALAQQLGTPIRFIGVGETLDDLRP 437

Query: 301 FVAKDFSAVIT 311
           F A++F   + 
Sbjct: 438 FAAREFVDALF 448


>gi|110835427|ref|YP_694286.1| cell division protein FtsY [Alcanivorax borkumensis SK2]
 gi|110648538|emb|CAL18014.1| Cell division protein FtsY [Alcanivorax borkumensis SK2]
          Length = 397

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 130/311 (41%), Positives = 199/311 (63%), Gaps = 2/311 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVA 61
           + +V  +  ++  ++ +G + T   L +G+ D++  ++ +DD + EE+E  L+ +D+GV 
Sbjct: 82  SPEVNDDEGNFWTRMKQGMSKTRKGLGKGLADLLVGAKEIDDEIFEEIETQLLVADVGVE 141

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               IV+ L  +   +++     LY+ +   + K+L+P+ +P   D S +P+VIL+VGVN
Sbjct: 142 ATDVIVQALTDQVSREELVDADALYESLQNELRKLLVPVDQPMQIDSSKKPYVILMVGVN 201

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 202 GVGKTTTIGKLACRFKAEGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVVAQHTGADSAS 261

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A + AQ++  D+LI DTAGRLH    LM  + K+ RV+K+L P APH VL VLDA 
Sbjct: 262 VVYDAVQAAQSRGADILIADTAGRLHTRGNLMDELTKVTRVMKKLIPDAPHEVLLVLDAG 321

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q E F   AG TGL +TK+DGTA+GG L  +     +P+ F+GVGE + DL P
Sbjct: 322 TGQNAINQAEQFRDAAGVTGLALTKLDGTAKGGILFALAKRTGLPIRFIGVGEQLEDLRP 381

Query: 301 FVAKDFSAVIT 311
           F A++F   + 
Sbjct: 382 FHAEEFVQALF 392


>gi|93006307|ref|YP_580744.1| signal recognition particle-docking protein FtsY [Psychrobacter
           cryohalolentis K5]
 gi|92393985|gb|ABE75260.1| signal recognition particle-docking protein FtsY [Psychrobacter
           cryohalolentis K5]
          Length = 477

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 138/317 (43%), Positives = 200/317 (63%), Gaps = 2/317 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIG 59
           +  ++ +S+  SW  ++  G + +   L EG+  I I  + +DD + EE+ED L+ +DIG
Sbjct: 159 LQEEQESSKKGSWFNRMKTGLSKSRKNLAEGMVSILIGGKEIDDELLEEVEDQLLVADIG 218

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           V    +I++ L  +    D+     LY  +   +  +L P   P   D S +P VILVVG
Sbjct: 219 VNATNRIIKSLTEQTDRGDLIYAHSLYKALQTELVDILTPKVAPLIIDSSKKPFVILVVG 278

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+K++   G  VMLAAGDTFR+AA +QL+IW +R     V    GSD+
Sbjct: 279 VNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGERNHIPVVAQGHGSDS 338

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ ++A + A+AK +DVLI DTAGRL N + LMA + K++RV+++ DP APH  + VLD
Sbjct: 339 ASVIFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADPSAPHEGMIVLD 398

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQNA+ QVE+F+ V   TG+ +TK+DGTA+GG +  I  T  +P+ ++GVGE I+DL
Sbjct: 399 AGTGQNAINQVELFNKVVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDDL 458

Query: 299 EPFVAKDFSAVITGCLD 315
             F  K F A +    D
Sbjct: 459 RAFSPKQFVAALFETDD 475


>gi|109900243|ref|YP_663498.1| signal recognition particle-docking protein FtsY [Pseudoalteromonas
           atlantica T6c]
 gi|109702524|gb|ABG42444.1| signal recognition particle-docking protein FtsY [Pseudoalteromonas
           atlantica T6c]
          Length = 485

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 191/312 (61%), Gaps = 2/312 (0%)

Query: 2   SNQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
             ++      +    KL +  + T   L  G   +   + +DD + EELE  L+ +D+G+
Sbjct: 161 PEEEPEKPVKMGLFAKLRQSLSRTKENLGSGFISLFRGKAIDDDLFEELETQLLVADVGI 220

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               KI+  L        +     LY +  + +  +L  +S+P        P VIL+VGV
Sbjct: 221 DTTSKIISRLTDSAKRNQLKDGEALYQLLKQQMSNILQEVSQPLEPKSEDGPFVILMVGV 280

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGK++K+    G KVMLAAGDTFR+AA++QL++W +R +   +  + GSD+A
Sbjct: 281 NGVGKTTTIGKMAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQKTGSDSA 340

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+A + A+A+ VDVLI DTAGRL N   LM  + K++RV+++++P+APH V+  LDA
Sbjct: 341 SVIYDALESAKARNVDVLIADTAGRLQNKDHLMEELKKVVRVMRKINPNAPHEVMLTLDA 400

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  +    KIP+ ++GVGEGI+DL 
Sbjct: 401 ATGQNAVSQTKLFNQAVGLTGITLTKLDGTAKGGVIFALADQFKIPIRYIGVGEGIDDLR 460

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 461 PFASDEFVEALF 472


>gi|237809748|ref|YP_002894188.1| signal recognition particle-docking protein FtsY [Tolumonas auensis
           DSM 9187]
 gi|237502009|gb|ACQ94602.1| signal recognition particle-docking protein FtsY [Tolumonas auensis
           DSM 9187]
          Length = 435

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 125/308 (40%), Positives = 190/308 (61%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +   +  S   +L KG   T   +  G   +   ++LDD + +ELE  L+ +D+GV   Q
Sbjct: 123 QEKPKRTSLFGRLVKGLMRTRESIGAGFMALFRGKKLDDDLFDELETQLLTADLGVETTQ 182

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +I++ L+ +     +     LYD+  + +  +L P+S+P   D S  P+VIL++GVNGVG
Sbjct: 183 RIMQGLIKQAKFHQLKDAEALYDLLKQEMAAILQPVSQPLQIDSSKTPYVILMIGVNGVG 242

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K     G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ +
Sbjct: 243 KTTTIGKLAKHFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNHIPVIAQHTGADSASVIF 302

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+++ +D+LI DTAGRL N   LM  + K++RV+K+LD  APH V+  LDA+TGQ
Sbjct: 303 DAIQAAKSRNIDILIADTAGRLQNKGHLMEELKKIVRVMKKLDDSAPHEVMLTLDASTGQ 362

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F    G  G+ +TK+DGTA+GG +  I     IP+ ++GVGE I DL PF A
Sbjct: 363 NAISQAKLFGEAVGVNGITLTKLDGTAKGGVIFAIANQFGIPIRYIGVGEAIEDLRPFEA 422

Query: 304 KDFSAVIT 311
            DF   + 
Sbjct: 423 NDFIEALF 430


>gi|312963639|ref|ZP_07778120.1| signal recognition particle-docking protein FtsY [Pseudomonas
           fluorescens WH6]
 gi|311282148|gb|EFQ60748.1| signal recognition particle-docking protein FtsY [Pseudomonas
           fluorescens WH6]
          Length = 463

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 125/307 (40%), Positives = 189/307 (61%), Gaps = 3/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65
            +    +  +L +G + TS  + EG+  +   ++ +DD + E++E  L+ +D+GV     
Sbjct: 152 ETSKTGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDELLEDIETRLLTADVGVEATAV 211

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L  K   K ++    LY  +   +  ML P+  P      ++P VILVVGVNG GK
Sbjct: 212 IIQSLTQKVARKQLTDADALYKSLQAELAAMLKPVEAPLVI-TPNKPFVILVVGVNGAGK 270

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++
Sbjct: 271 TTTIGKLAKKLQGEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVIFD 330

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQN
Sbjct: 331 AVQAAKARNIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQN 390

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+
Sbjct: 391 AISQAKQFNQTVQLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAE 450

Query: 305 DFSAVIT 311
            F   + 
Sbjct: 451 PFVQALF 457


>gi|253686507|ref|YP_003015697.1| signal recognition particle-docking protein FtsY [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753085|gb|ACT11161.1| signal recognition particle-docking protein FtsY [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 495

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 123/316 (38%), Positives = 194/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV
Sbjct: 181 VAQEQERPTKEGFFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLVADVGV 240

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      + +     L+  + + + ++L  +  P N +    P+VIL+VGV
Sbjct: 241 ETTRKIITSLTEHASRRQLKDADTLFVKLKDEMAEILAKVDAPLNIE-GKTPYVILMVGV 299

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGK++++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A
Sbjct: 300 NGVGKTTTIGKMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSA 359

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA
Sbjct: 360 SVIFDAIQAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDA 419

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL 
Sbjct: 420 STGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLR 479

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 480 PFKADDFIEALFARED 495


>gi|229593151|ref|YP_002875270.1| cell division protein [Pseudomonas fluorescens SBW25]
 gi|229365017|emb|CAY53174.1| cell division protein [Pseudomonas fluorescens SBW25]
          Length = 469

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 126/309 (40%), Positives = 189/309 (61%), Gaps = 3/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVA 63
            V +    +  +L +G + TS  + EG+  +   ++ +DD + E++E  L+ +D+GV   
Sbjct: 156 PVETSKAGFFSRLKQGLSKTSASIGEGMASLFLGKKVIDDELLEDIETRLLTADVGVEAT 215

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             I++ L  K   K ++    LY  +   +  ML P+  P       +P VILVVGVNG 
Sbjct: 216 AVIIQSLTQKVARKQLTDADALYKSLQAELAAMLKPVEAPLVI-TPKKPFVILVVGVNGA 274

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ 
Sbjct: 275 GKTTTIGKLAKKLQSEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADSASVI 334

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TG
Sbjct: 335 FDAVQAAKARNIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTG 394

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F 
Sbjct: 395 QNAISQAKQFNQTVQLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFE 454

Query: 303 AKDFSAVIT 311
           A+ F   + 
Sbjct: 455 AEPFVQALF 463


>gi|149378431|ref|ZP_01896125.1| signal recognition particle-docking protein FtsY [Marinobacter
           algicola DG893]
 gi|149357281|gb|EDM45809.1| signal recognition particle-docking protein FtsY [Marinobacter
           algicola DG893]
          Length = 400

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 126/304 (41%), Positives = 193/304 (63%), Gaps = 2/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +S   ++ KG   T   L  G  D+ S  +++D+ + EE+E  L+ +D+GV    +I+E
Sbjct: 91  QVSVFERIRKGLGKTRANLTGGFADLFSIGKKVDEDLLEEIETTLLMADVGVTATSEIIE 150

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K     +     L   + + +H +L  ++KP   D S +P+VIL+VGVNGVGKTT 
Sbjct: 151 SLTDKLERNQLKDGEALRKALRDELHGLLADVTKPLEIDASKKPYVILMVGVNGVGKTTT 210

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K     G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ ++A +
Sbjct: 211 IGKLTKLFQRDGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIFDAVQ 270

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            AQ++ VDV+I DTAGRL N   LM+ + K++RV+K+LD  APH V+ VLDA TGQNAL 
Sbjct: 271 SAQSRGVDVVIADTAGRLQNKDNLMSELEKVVRVMKKLDESAPHEVMLVLDAGTGQNALS 330

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q ++F    G +G+ +TK+DGTA+GG +  I    ++P+ ++GVGE ++DL  F A+ F 
Sbjct: 331 QAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRYIGVGEQVDDLRSFDARTFV 390

Query: 308 AVIT 311
             + 
Sbjct: 391 DALF 394


>gi|261819462|ref|YP_003257568.1| cell division protein FtsY [Pectobacterium wasabiae WPP163]
 gi|261603475|gb|ACX85961.1| signal recognition particle-docking protein FtsY [Pectobacterium
           wasabiae WPP163]
          Length = 471

 Score =  324 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 124/316 (39%), Positives = 194/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + +ELE+ L+ +D+GV
Sbjct: 157 VAQEQERPTKEGFFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFDELEEQLLIADVGV 216

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      + +     L+  + E + ++L  +  P N +    P+VIL+VGV
Sbjct: 217 ETTRKIISSLTEHVSRRQLKDADTLFVKLKEEMAEILAKVDAPLNIE-GKTPYVILMVGV 275

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGK++++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A
Sbjct: 276 NGVGKTTTIGKMARQFQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNVAVVAQHTGADSA 335

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA
Sbjct: 336 SVIFDAIQAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTLDA 395

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL 
Sbjct: 396 STGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLR 455

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 456 PFKADDFIEALFARED 471


>gi|148652808|ref|YP_001279901.1| signal recognition particle-docking protein FtsY [Psychrobacter sp.
           PRwf-1]
 gi|148571892|gb|ABQ93951.1| signal recognition particle-docking protein FtsY [Psychrobacter sp.
           PRwf-1]
          Length = 397

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 134/310 (43%), Positives = 198/310 (63%), Gaps = 2/310 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           QK   +   W  ++  G + +   L EG+ +I I  + +DD + EE+ED L+ +DIGV  
Sbjct: 84  QKEDKKRGGWFSRMKSGLSKSRKNLAEGVANILIGGKEIDDELLEEVEDQLLVADIGVEA 143

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             KI++ L  +    D+     LY  + + + ++L P   P   D S +P VILVVGVNG
Sbjct: 144 TDKIIKSLTEQTARGDLIYSHSLYKALQKELVEILEPKVAPLIIDTSKKPFVILVVGVNG 203

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+K++   G  VMLAAGDTFR+AA +QL++W +R +   V    G+D+A++
Sbjct: 204 VGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQVWGERNNIPVVAQGHGADSASV 263

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+AK +DVLI DTAGRL N + LMA + K++R++++ DP APH  + VLDA T
Sbjct: 264 VFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRIMRKSDPTAPHEGMIVLDAGT 323

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ QV++F+     TG+ +TK+DGTA+GG +  I  T  IP+ ++GVGE I+DL  F
Sbjct: 324 GQNAINQVKIFNDAVPLTGITITKLDGTAKGGVVFNIANTTDIPIRYIGVGESIDDLRAF 383

Query: 302 VAKDFSAVIT 311
             K F A + 
Sbjct: 384 SPKQFVAALF 393


>gi|120556651|ref|YP_961002.1| signal recognition particle-docking protein FtsY [Marinobacter
           aquaeolei VT8]
 gi|120326500|gb|ABM20815.1| signal recognition particle-docking protein FtsY [Marinobacter
           aquaeolei VT8]
          Length = 405

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 123/307 (40%), Positives = 191/307 (62%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQK 65
               +S   ++ +G   T   L  G+ D+ S  +++D+ + EE+E  L+ +D+GV    +
Sbjct: 97  PETRVSVFERIKQGLGKTRASLTGGLADLFSVGKKIDEDLLEEIETTLLMADVGVTATSE 156

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L  K     +     L   + + +H +L  +++P   D   +P+VIL+VGVNGVGK
Sbjct: 157 IIDALTEKLERNQLKDGEALRKALRDELHGLLKEVARPLEIDAGKQPYVILMVGVNGVGK 216

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ ++
Sbjct: 217 TTTIGKLTKKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIFD 276

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + AQ++ VDV+I DTAGRL N   LM  + K++RV+K+LD  APH V+ VLDA TGQN
Sbjct: 277 AIQSAQSRGVDVVIADTAGRLQNKDNLMNELSKVVRVMKKLDESAPHEVMLVLDAGTGQN 336

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q ++F    G +G+ +TK+DGTA+GG +  I    ++P+ ++GVGE   DL  F A+
Sbjct: 337 ALSQAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRYIGVGEQAEDLRSFDAE 396

Query: 305 DFSAVIT 311
            F   + 
Sbjct: 397 TFVDALF 403


>gi|238021574|ref|ZP_04602000.1| hypothetical protein GCWU000324_01474 [Kingella oralis ATCC 51147]
 gi|237866188|gb|EEP67230.1| hypothetical protein GCWU000324_01474 [Kingella oralis ATCC 51147]
          Length = 542

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 184/309 (59%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +        W  +L +G   +   + + +  +    ++D+ + EELE +L+ SD+G+   
Sbjct: 234 ETEPETKPGWASRLKQGLTKSRNHMAKSLAGVFGGGQIDEDLYEELETVLLTSDMGIEAT 293

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           ++++ E+  +   K +     L   + + ++ +L PL +P     +  P VI++ G+NG 
Sbjct: 294 EQLMREVRDRVSLKGLKDGNELRQALKDAVYDLLKPLEQPLAIPENGAPFVIMLAGINGA 353

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R     + S+   D+AA+ 
Sbjct: 354 GKTTSIGKLAKYFQAQGKSVILAAGDTFRAAAREQLQEWGERNGVTVI-SQAKGDSAAVC 412

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+++D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  G
Sbjct: 413 FDAVEAAKARQIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKSLPDAPHEIIVVLDANIG 472

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ QV  F    G TGLI+TK+DGTA+GG L  +  +  IPV ++GVGE I+DL PF 
Sbjct: 473 QNAVNQVVAFDDALGVTGLIVTKLDGTAKGGVLAALASSRAIPVRYIGVGESIDDLRPFN 532

Query: 303 AKDFSAVIT 311
           AKDF   + 
Sbjct: 533 AKDFVDALL 541


>gi|296114906|ref|ZP_06833554.1| signal recognition particle-docking protein FtsY [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978612|gb|EFG85342.1| signal recognition particle-docking protein FtsY [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 331

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 136/303 (44%), Positives = 208/303 (68%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +L +  +L  G + ++ KL  G++ + + R+LDD   E+LEDLLI +D+G  VA K+++ 
Sbjct: 2   ALGFFSRLKAGLSRSTQKLSGGLSAVFTRRKLDDQALEDLEDLLISADLGPNVAAKVIDS 61

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             + ++ K+V+ + V   ++E I K+L P++ PF  D +H+PHV+LVVGVNG GKTT IG
Sbjct: 62  FRSSKFGKEVTDEEVRTALAEEIAKILEPVAIPFEPDPAHKPHVVLVVGVNGTGKTTTIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+++   + G KVM+ AGDTFR+AA++QL++W +R  A  +     +DAA LA+EA K+ 
Sbjct: 122 KMARYYGEQGKKVMMVAGDTFRAAAVEQLQVWGERVGAPVIAGPPNADAAGLAFEALKKG 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D+L++DTAGRLHN   LM  + K+IRV+++ D  APHSV  VLDATTGQNA+ QV
Sbjct: 182 KAEGADLLLVDTAGRLHNKGALMEELAKIIRVMRKFDETAPHSVFLVLDATTGQNAMEQV 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  +   TGL++TK+DG+ARGG ++ +     +PV+ +GVGE   DL PF A+ F+  
Sbjct: 242 RVFKELVNVTGLVVTKLDGSARGGIVVALADAFGLPVHMVGVGEQAEDLRPFSAQAFAQG 301

Query: 310 ITG 312
           + G
Sbjct: 302 LVG 304


>gi|119944395|ref|YP_942075.1| signal recognition particle-docking protein FtsY [Psychromonas
           ingrahamii 37]
 gi|119862999|gb|ABM02476.1| signal recognition particle-docking protein FtsY [Psychromonas
           ingrahamii 37]
          Length = 453

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 125/310 (40%), Positives = 199/310 (64%), Gaps = 1/310 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            QK   ++L +  +  +    T L +  G+  + S +++D  + EELE+ LI +DIGV  
Sbjct: 137 KQKTEEKALGFFARFKQSLTKTRLSIGSGLYSLFSGKKIDADLFEELEEQLILADIGVDT 196

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             KI+++L  +   K +     LY +  E +  +L  + +P   D +  P+VIL+VGVNG
Sbjct: 197 TLKIIDKLTAQANRKQLKDAEALYTLLKEDLSGILQEVEQPLVIDETKSPYVILMVGVNG 256

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+KK    G  VMLAAGDTFR+AA++QL++W +R +   +  + GSD+A++
Sbjct: 257 VGKTTTIGKLAKKYQQQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQQTGSDSASV 316

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A   A+A+ +DVLI DTAGRL N   LM  + K++R++++ DP APH ++  +DA+T
Sbjct: 317 LFDAMDAAKARGIDVLIADTAGRLQNKEHLMDELSKVVRIMRKKDPSAPHEIMLTIDAST 376

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I   +K+P+ ++G GEGI+DL  F
Sbjct: 377 GQNAISQADLFNKAVGITGITLTKLDGTAKGGVIFSIADKYKLPIRYIGTGEGIDDLREF 436

Query: 302 VAKDFSAVIT 311
            A++F   + 
Sbjct: 437 NAREFIDALF 446


>gi|23015509|ref|ZP_00055283.1| COG0552: Signal recognition particle GTPase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 330

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 148/306 (48%), Positives = 212/306 (69%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
            E+ SW  +L  G A +S KL +G+ D+ + R+LDD   E+LEDLLI +D+GVA A ++ 
Sbjct: 24  EETASWFGRLKSGLAKSSSKLTQGLGDLFTKRKLDDEALEDLEDLLITADLGVATAARVT 83

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + L   R+ +DV+   +   ++E I ++L P+++P   D + +PHV+LVVGVNG GKTT 
Sbjct: 84  KHLAKTRFGQDVTSDEIKATLAEEITRILAPVARPLAIDPNRKPHVVLVVGVNGSGKTTT 143

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGK++K   DAGL V LAAGDTFR+AA++QLK+W +RT+   +  E G+DAA LAY+A +
Sbjct: 144 IGKMAKTYKDAGLSVTLAAGDTFRAAAVEQLKVWGERTNCPVIARETGADAAGLAYDAVE 203

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           Q++A+  D+L IDTAGRL N + LMA + K++R +K++D  APHSVL VLDAT GQNA  
Sbjct: 204 QSRARGDDLLFIDTAGRLQNKADLMAELAKLVRSIKKVDETAPHSVLLVLDATVGQNAHS 263

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QVE+F  +   +GL++TK+DGTARGG L+ +     +PV+ +GVGE   DL PF A  F+
Sbjct: 264 QVEIFKDMVAVSGLVLTKLDGTARGGVLVALAEKFGLPVHAIGVGEKAEDLRPFEADAFA 323

Query: 308 AVITGC 313
             + G 
Sbjct: 324 KSLVGM 329


>gi|325267267|ref|ZP_08133929.1| cell division protein FtsY [Kingella denitrificans ATCC 33394]
 gi|324981204|gb|EGC16854.1| cell division protein FtsY [Kingella denitrificans ATCC 33394]
          Length = 521

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 186/312 (59%), Gaps = 2/312 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q    E L+W  +L +G   +   + + +  +    ++D+ + EELE +L+ SD+G+   
Sbjct: 208 QPEEEEPLNWTARLVRGLDKSRNHMAKSLAGVFGGGKIDEDLYEELETVLLTSDMGIEAT 267

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + +++E+  +   + +   + L   + E I+ +L PL KP     + +P VI++ G+NG 
Sbjct: 268 EHLMKEVRERVSLRGLKDGKELRQALKEAIYDLLKPLEKPLVLPENGQPFVIMMAGINGA 327

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K     G  VMLAAGDTFR+AA +QL+ W +R     +  E G  A A+ 
Sbjct: 328 GKTTSIGKLAKYFQKQGKSVMLAAGDTFRAAAREQLQEWGERNGVVVISQEKGDSA-AVC 386

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+K+DV++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  G
Sbjct: 387 FDAVEAAKARKIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIIVVLDANIG 446

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ QV  F    G TGLI+TK+DGTA+GG L  +  +  IPV F+GVGE I+DL PF 
Sbjct: 447 QNAVNQVVAFDDALGVTGLIVTKLDGTAKGGVLAALASSRAIPVRFIGVGERIDDLRPFN 506

Query: 303 AKDFSAVITGCL 314
           A+ F   +    
Sbjct: 507 ARAFVDALLDEG 518


>gi|169633653|ref|YP_001707389.1| cell division protein [Acinetobacter baumannii SDF]
 gi|169152445|emb|CAP01410.1| cell division protein [Acinetobacter baumannii]
          Length = 368

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 133/312 (42%), Positives = 196/312 (62%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
            + +       +  ++ +G + T     +G+ +I I  + +DD + EE+E  L+ +DIGV
Sbjct: 53  PSTEPEQPKSGFFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEGQLLVADIGV 112

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGV
Sbjct: 113 DATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGV 172

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A
Sbjct: 173 NGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSA 232

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA
Sbjct: 233 SVIFDASESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDA 292

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ QV+ F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL 
Sbjct: 293 GTGQNAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLR 352

Query: 300 PFVAKDFSAVIT 311
           PF AK F A + 
Sbjct: 353 PFSAKSFVAALF 364


>gi|71278165|ref|YP_266925.1| signal recognition particle-docking protein FtsY [Colwellia
           psychrerythraea 34H]
 gi|71143905|gb|AAZ24378.1| signal recognition particle-docking protein FtsY [Colwellia
           psychrerythraea 34H]
          Length = 481

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 133/308 (43%), Positives = 197/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + A   L +  +L +G + T   L  G+ D+   +++DD + EELE  L+ +D+GV    
Sbjct: 172 EKAESKLGFFARLKQGLSKTRQNLGGGLIDLFRGKQIDDDLFEELETHLLLADVGVETTM 231

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+E L      K +     LYD+ +  + K++  +S+P        P VIL+VGVNGVG
Sbjct: 232 KIIESLTQSANRKQLKDASALYDLLKIELKKVIEDVSQPLVIPEDDGPFVILMVGVNGVG 291

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ +
Sbjct: 292 KTTTIGKLAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSASVIF 351

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+KVD++I DTAGRL N + LM  + K++RV+K+LD +APH V+  LDA TGQ
Sbjct: 352 DAISAAKARKVDIIIADTAGRLQNKAHLMEELKKVVRVMKKLDVNAPHEVMLTLDAGTGQ 411

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q ++F    G TGL +TK+DGTA+GG +  +   H IP+ +LGVGEGI+DL PF +
Sbjct: 412 NALSQTKLFDEAVGLTGLTITKLDGTAKGGVIFAVADKHSIPIRYLGVGEGIDDLRPFNS 471

Query: 304 KDFSAVIT 311
            DF   + 
Sbjct: 472 DDFIDALF 479


>gi|304415087|ref|ZP_07395823.1| fused Signal Recognition Particle (SRP) receptor and membrane
           binding protein/conserved protein [Candidatus Regiella
           insecticola LSR1]
 gi|304283060|gb|EFL91487.1| fused Signal Recognition Particle (SRP) receptor and membrane
           binding protein/conserved protein [Candidatus Regiella
           insecticola LSR1]
          Length = 426

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 125/315 (39%), Positives = 196/315 (62%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           SN +      ++  +L K    T   +  G+ ++   +++DD   E+LE+ L+ +DIGV 
Sbjct: 113 SNVQKQPNKENFFTRLKKSLLKTKQNIGFGLLNLFRGKKIDDDFFEQLEEKLLIADIGVE 172

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              KI++ L      K +    VLY+ + E + ++L  + KP   +  + P VIL+VGVN
Sbjct: 173 TTHKIIKSLTEHANRKQLKDAEVLYEKLKETMAEILAKVDKPLETNGKN-PCVILMVGVN 231

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +    G  VMLAAGDTFR+AA++QL++W +R +   +    G+D+A+
Sbjct: 232 GVGKTTTIGKLAYQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSAS 291

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++AF+ A+A+ +DVL+ DTAGRL N + LM  + K++RV+K++D  APH ++  LDA+
Sbjct: 292 VIFDAFQAAKARNIDVLLADTAGRLQNKTDLMIELQKIVRVMKKIDEKAPHEIMLTLDAS 351

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++FH   G TG+ +TK+DG+A+GG +  I     IP+ ++GVGE I DL  
Sbjct: 352 TGQNAVNQAKLFHEAVGLTGINLTKLDGSAKGGVIFAIADQFGIPIRYIGVGEAIEDLRL 411

Query: 301 FVAKDFSAVITGCLD 315
           F A DF   +    D
Sbjct: 412 FKADDFIEALFARED 426


>gi|329896518|ref|ZP_08271576.1| Signal recognition particle receptor protein FtsY [gamma
           proteobacterium IMCC3088]
 gi|328921735|gb|EGG29108.1| Signal recognition particle receptor protein FtsY [gamma
           proteobacterium IMCC3088]
          Length = 375

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 125/305 (40%), Positives = 191/305 (62%), Gaps = 3/305 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   W  +L +G + T  +L  G+ ++   R+ +D  + E+LE  L+ +D+G+     IV
Sbjct: 67  EKSGWYARLKQGLSRTRGQLSSGLGNLFLGRKVIDADLLEDLESTLLMADVGIEATTHIV 126

Query: 68  EELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           E+L  +   K+++    +L  + + +  M+ P  K      +  P VIL+VGVNG GKTT
Sbjct: 127 EQLTAQVSRKELADGDALLRALKQALTNMVGPYEKALPLAATA-PTVILMVGVNGAGKTT 185

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+++    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ ++A 
Sbjct: 186 TIGKLAQRYKAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQHTGADSASVIFDAL 245

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + AQA+ VDVLI DTAGRLHN   LM  + K++RV+K+L+P APH V+ VLDAT GQNA+
Sbjct: 246 QAAQARGVDVLIADTAGRLHNKDNLMEELKKVVRVMKKLNPEAPHEVMLVLDATMGQNAI 305

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F A    +G+ +TK+DGTA+GG +  I     IP+ ++GVGE + DL PF A+ F
Sbjct: 306 AQAQHFKAAVDVSGITLTKLDGTAKGGVIFAIAHKLGIPIRYIGVGESLEDLRPFEAEPF 365

Query: 307 SAVIT 311
              + 
Sbjct: 366 VNALF 370


>gi|224827259|ref|ZP_03700353.1| signal recognition particle-docking protein FtsY [Lutiella
           nitroferrum 2002]
 gi|224600548|gb|EEG06737.1| signal recognition particle-docking protein FtsY [Lutiella
           nitroferrum 2002]
          Length = 358

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 188/309 (60%), Gaps = 3/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + V  +  SW  +L  G + T  KL + +  +    ++D+ + +ELE +L+ +D+GV   
Sbjct: 51  EAVPPKKPSWTERLKAGLSKTRDKLGKSLAGLFGGGKIDEDLYDELETVLLTADMGVDAT 110

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             +++++  +   + +     L   + + ++ ++ PL +P +     +P+VI++ GVNG 
Sbjct: 111 LHLLKDVRERVSLRGLKDAAELKGALKDSLNDLIGPLEQPLDI-AGRKPYVIMMAGVNGA 169

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K     G  V+LAAGDTFR+AA +QL  W +R +   +  + G  A A+ 
Sbjct: 170 GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLIAWGERNNVTVIAQQSGDSA-AVC 228

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K AQA+ +D+++ DTAGRL     LM  I K+ RV+++  P APH V+ VLDA  G
Sbjct: 229 FDAIKAAQARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPEAPHEVMLVLDANIG 288

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ QV++F    G TGLI+TK+DGTA+GG +  I   + +P+ F+GVGE I+DL PF 
Sbjct: 289 QNAINQVKVFDEALGLTGLILTKLDGTAKGGVIAAIAKQNPVPLRFVGVGESIDDLRPFN 348

Query: 303 AKDFSAVIT 311
           A+D+   + 
Sbjct: 349 ARDYVDALF 357


>gi|330831384|ref|YP_004394336.1| ABC transporter permease [Aeromonas veronii B565]
 gi|328806520|gb|AEB51719.1| ABC transporter permease component [Aeromonas veronii B565]
          Length = 557

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 127/308 (41%), Positives = 193/308 (62%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +   +   +  +L +    T   +  G   +   +++DD + EELE  L+ +D+GV    
Sbjct: 246 QDKPQREGFFARLKRSLVRTKENIGSGFFGLFRGKKIDDELFEELETQLLTADLGVDTTT 305

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +I+E L+     K +     LY  + + + +ML  + +P   D S +P+VIL+VGVNGVG
Sbjct: 306 RIIEGLVQHADRKQLKDAEALYGLLKQDMGEMLAKVEQPLVIDTSKKPYVILMVGVNGVG 365

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ Y
Sbjct: 366 KTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIY 425

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+++  DVLI DTAGRL N S LM  + K++RV+K+LD  APH ++  LDA TGQ
Sbjct: 426 DAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEIMLTLDAGTGQ 485

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q ++F    G TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PFVA
Sbjct: 486 NALSQAKLFSEAVGLTGITLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVA 545

Query: 304 KDFSAVIT 311
            DF   + 
Sbjct: 546 NDFIEALF 553


>gi|254427512|ref|ZP_05041219.1| signal recognition particle-docking protein FtsY, putative
           [Alcanivorax sp. DG881]
 gi|196193681|gb|EDX88640.1| signal recognition particle-docking protein FtsY, putative
           [Alcanivorax sp. DG881]
          Length = 394

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 129/302 (42%), Positives = 194/302 (64%), Gaps = 2/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  ++ +G + T   L +G+ D++  ++ +DD + EE+E  L+ +D+GV     IV+ L
Sbjct: 88  GFWTRMKQGMSKTRKGLGKGLADLLVGAKEIDDEIFEEIETQLLVADVGVEATDVIVQAL 147

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   +++     LY+ +   + K+L+P+ +P   D S +P+VIL+VGVNGVGKTT IG
Sbjct: 148 TDQVTREELVDADALYESLQNELRKLLVPVDQPMQIDGSKKPYVILMVGVNGVGKTTTIG 207

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ Y+A + A
Sbjct: 208 KLACRFKAEGKSVMLAAGDTFRAAAVEQLQVWGERNDIPVVAQHTGADSASVVYDAVQAA 267

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q++  D+LI DTAGRLH    LM  + K+ RV+K+L P APH VL VLDA TGQNA+ Q 
Sbjct: 268 QSRGADILIADTAGRLHTRGNLMEELTKVTRVMKKLIPDAPHEVLLVLDAGTGQNAINQA 327

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F   AG TGL +TK+DGTA+GG L  +     +P+ F+GVGE + DL PF A++F   
Sbjct: 328 EQFRDAAGVTGLALTKLDGTAKGGILFALAKRTGLPIRFIGVGERLEDLRPFHAEEFVQA 387

Query: 310 IT 311
           + 
Sbjct: 388 LF 389


>gi|126664539|ref|ZP_01735523.1| signal recognition particle-docking protein FtsY [Marinobacter sp.
           ELB17]
 gi|126630865|gb|EBA01479.1| signal recognition particle-docking protein FtsY [Marinobacter sp.
           ELB17]
          Length = 406

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 123/307 (40%), Positives = 193/307 (62%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQK 65
               +S + ++ +G   T      G+ D+ S  +++D  + EE+E  L+ +D+GV    +
Sbjct: 99  PEPQISVLERIRRGLGKTRASFTGGLADMFSAGKKIDADLLEEIETTLLMADVGVTATTE 158

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I+E L  K     +     L   + + +H +L  +SKP   D   +P+VIL+VGVNGVGK
Sbjct: 159 IIESLTEKLKRDQLKDGEALRQALRDQLHGLLKDVSKPLVIDAQTKPYVILMVGVNGVGK 218

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK  D G+ V+LAAGDTFR+AA++QL++W DR     +    G+D+A++ ++
Sbjct: 219 TTTIGKLTKKFQDEGMSVLLAAGDTFRAAAMEQLQVWGDRNKVPVIAQHTGADSASVIFD 278

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+++ +DV+I DTAGRL N   LM+ + K++RV+K+LD  APH V+ VLDA TGQN
Sbjct: 279 AIQSAKSRGIDVVIADTAGRLQNKDNLMSELEKVVRVMKKLDTAAPHEVMLVLDAGTGQN 338

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q ++F    G +G+ +TK+DGTA+GG +  I    ++P+ F+G+GE + DL  F A+
Sbjct: 339 ALNQAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRFIGIGEQVEDLRSFDAR 398

Query: 305 DFSAVIT 311
            F   + 
Sbjct: 399 AFVDALF 405


>gi|292492241|ref|YP_003527680.1| signal recognition particle-docking protein FtsY [Nitrosococcus
           halophilus Nc4]
 gi|291580836|gb|ADE15293.1| signal recognition particle-docking protein FtsY [Nitrosococcus
           halophilus Nc4]
          Length = 356

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 130/311 (41%), Positives = 192/311 (61%), Gaps = 4/311 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVA 61
            + V  + L   ++L      T   L  GI D+ +  + +DD + EE+E  L+ +D+GV 
Sbjct: 36  TETVKKQRL--FKRLRNRLGRTRGNLTGGIADLMLGKKNIDDELLEEIETQLLVADVGVE 93

Query: 62  VAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             Q I++ L  +   K +     L   + E + ++L+P S P       +P VIL+VGVN
Sbjct: 94  ATQSIIDNLTVRVSRKQLKDPAALMAALRENMQELLLPSSHPLVIPEGIKPFVILMVGVN 153

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+KK    G  VMLAAGDTFR+AA++QL+ W +R     +    G+D+A+
Sbjct: 154 GVGKTTTIGKLAKKFQAEGRSVMLAAGDTFRAAAVEQLQAWGERNQVPVIAQRSGADSAS 213

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + AQA+ +DVLI DTAGRLH  + LM  + K+ RV+ ++DP APH ++  +DA 
Sbjct: 214 VIFDALQSAQARGIDVLIADTAGRLHTQANLMEELKKVKRVMGKVDPQAPHEIMLTVDAG 273

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q + FH   G TG+ +TK+DGTA+GG +  I     +P+ F+GVGEGI+DL P
Sbjct: 274 TGQNALNQAKQFHEAVGLTGITLTKLDGTAKGGVIFAIAKKMALPIRFIGVGEGIDDLRP 333

Query: 301 FVAKDFSAVIT 311
           F A++F A + 
Sbjct: 334 FDAEEFVAALL 344


>gi|332308276|ref|YP_004436127.1| signal recognition particle-docking protein FtsY [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332175605|gb|AEE24859.1| signal recognition particle-docking protein FtsY [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 483

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 124/310 (40%), Positives = 199/310 (64%), Gaps = 3/310 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           ++K A   +  + KL +  + T + L  G   +   + +DD + EELE  L+ +D+G+  
Sbjct: 163 SEKPA--KMGLLAKLRQSLSRTKVNLGSGFVSLFRGKAIDDDLYEELETQLLVADVGMDT 220

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             KI+++L        +     LY +  + + ++L  +S+P   +    P VIL+VGVNG
Sbjct: 221 TNKIIKKLTDGAKRNQLKDGDALYQLLKQQMSEILQEVSQPLVPEADEGPFVILMVGVNG 280

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGK++K+    G KVMLAAGDTFR+AA++QL++W +R +   +  + GSD+A++
Sbjct: 281 VGKTTTIGKMAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQKTGSDSASV 340

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A + A+A+ VDVLI DTAGRL N   LM  + K++RV+++++P+APH V+  LDA T
Sbjct: 341 IYDALESAKARNVDVLIADTAGRLQNKEHLMEELKKVLRVMRKINPNAPHEVMLTLDAAT 400

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q ++F+   G +G+ +TK+DGTA+GG +  +    KIP+ ++GVGEGI+DL PF
Sbjct: 401 GQNAVSQTKLFNQAVGLSGITLTKLDGTAKGGVIFALADQFKIPIRYIGVGEGIDDLRPF 460

Query: 302 VAKDFSAVIT 311
            + +F   + 
Sbjct: 461 ASDEFVEALF 470


>gi|332975302|gb|EGK12201.1| cell division protein FtsY [Psychrobacter sp. 1501(2011)]
          Length = 407

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 133/309 (43%), Positives = 196/309 (63%), Gaps = 2/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +   +   W  ++  G   +   L EG+ +I I  + +DD + EE+ED L+ +DIGV   
Sbjct: 95  EEDKKRGGWFSRMKSGLTKSRKNLAEGVANILIGGKEIDDELLEEVEDQLLVADIGVEAT 154

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI++ L  +    D+     LY  + + + ++L P   P   D S +P VILVVGVNGV
Sbjct: 155 DKIIKSLTEQTARGDLIYSHSLYKALQKELVEILEPKVAPLIIDTSKKPFVILVVGVNGV 214

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K++   G  VMLAAGDTFR+AA +QL+IW +R +   V    G+D+A++ 
Sbjct: 215 GKTTTIGKLAKRLQAEGKSVMLAAGDTFRAAATEQLQIWGERNNIPVVAQGHGADSASVV 274

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+AK +DVLI DTAGRL N + LMA + K++R++++ DP APH  + VLDA TG
Sbjct: 275 FDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRIMRKSDPTAPHEGMIVLDAGTG 334

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ QV++F+     TG+ +TK+DGTA+GG +  I  T  IP+ ++GVGE I+DL  F 
Sbjct: 335 QNAINQVKIFNDAVPLTGITITKLDGTAKGGVVFNIANTTDIPIRYIGVGESIDDLRAFS 394

Query: 303 AKDFSAVIT 311
            K F A + 
Sbjct: 395 PKQFVAALF 403


>gi|325275629|ref|ZP_08141529.1| signal recognition particle-docking protein FtsY [Pseudomonas sp.
           TJI-51]
 gi|324099236|gb|EGB97182.1| signal recognition particle-docking protein FtsY [Pseudomonas sp.
           TJI-51]
          Length = 329

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 130/310 (41%), Positives = 193/310 (62%), Gaps = 2/310 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66
                +  +L +G + TS  + EG+  +   ++ +DD + +E+E  L+ +D+GV     I
Sbjct: 20  QAKPGFFARLKQGLSKTSASIGEGMASLFLGKKVIDDDLLDEIETRLLTADVGVEATSTI 79

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           V+ L  K   K ++    LY  + E +  +L P+ +P      ++P+VILVVGVNG GKT
Sbjct: 80  VQNLTQKVARKQLADADALYKSLQEELAALLRPVEQPLKVQAQNKPYVILVVGVNGAGKT 139

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A
Sbjct: 140 TTIGKLAKKLQQEGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHTGADSASVIFDA 199

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA
Sbjct: 200 VQAAKARGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDAEAPHEVLLVLDAGTGQNA 259

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F+     TGL +TK+DGTA+GG +  +    K+P+ F+GVGEGI+DL  F A+ 
Sbjct: 260 ISQAKYFNQSVELTGLALTKLDGTAKGGVIFALAKQFKLPIRFIGVGEGIDDLRTFEAEP 319

Query: 306 FSAVITGCLD 315
           F   +    D
Sbjct: 320 FVKALFAERD 329


>gi|301155326|emb|CBW14792.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Haemophilus parainfluenzae
           T3T1]
          Length = 485

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 124/310 (40%), Positives = 194/310 (62%), Gaps = 2/310 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            Q+  SE   +  +L KG   T   +  G       +++DD + +ELE+ L+ +DIGV  
Sbjct: 171 TQEKPSEG-GFFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDDLFDELEEQLLIADIGVPT 229

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             KI++ L      K +    +LY  +   + ++L P+++P   D + +P+VIL+VGVNG
Sbjct: 230 TNKIIKNLTEHASRKQLQDAELLYQQLKVEMVEILKPVAQPLVIDTTKKPYVILMVGVNG 289

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL++K  + G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++
Sbjct: 290 VGKTTTIGKLARKFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASV 349

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A A+ +D+LI DTAGRL N + LM  + K++RV+++ D  APH ++  LDA T
Sbjct: 350 IFDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRVMRKYDETAPHEIMLTLDAGT 409

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q ++F    G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL  F
Sbjct: 410 GQNAISQAKLFDEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREF 469

Query: 302 VAKDFSAVIT 311
            A++F   + 
Sbjct: 470 NAEEFIEALF 479


>gi|34499658|ref|NP_903873.1| cell division protein FtsY [Chromobacterium violaceum ATCC 12472]
 gi|34105508|gb|AAQ61863.1| cell division protein FtsY [Chromobacterium violaceum ATCC 12472]
          Length = 375

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 117/312 (37%), Positives = 186/312 (59%), Gaps = 3/312 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           + ++ V  + +SW  +L  G A T  KL + +  +    ++D+ + EELE +L+ +D+G+
Sbjct: 65  IPDEPVPLKKMSWTERLKAGLAKTRDKLGKQLAGLFGGGKIDEDLYEELETVLLTADMGM 124

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + +++++  +   K +     L   + + +  ++ PL  P N +   +P VI++ GV
Sbjct: 125 DATEHLLQDVRERVSLKGLKDSSELKGALKDSLQDLIGPLEVPLNVE-GKKPFVIMMTGV 183

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+K     G  V+LAAGDTFR+AA +QL  W +R +   +  + G  A 
Sbjct: 184 NGAGKTTSIGKLAKYYQSQGKSVLLAAGDTFRAAAREQLIAWGERNNVTVIAQQGGDSA- 242

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A + A A+ +D+++ DTAGRL     LM  I K+ RV+++  P APH V+ VLDA
Sbjct: 243 AVCYDAIQAAIARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPDAPHEVVLVLDA 302

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             GQN + QV+ F    G TGLI+TK+DGTA+GG +  I     IP+ F+GVGE I+DL 
Sbjct: 303 NIGQNTVNQVKAFDDALGLTGLILTKLDGTAKGGVIAAIAKQRPIPLRFVGVGESIDDLR 362

Query: 300 PFVAKDFSAVIT 311
           PF ++D+   + 
Sbjct: 363 PFDSRDYIDALF 374


>gi|13377875|gb|AAK20880.1|AF334761_1 cell division protein FtsY [Aeromonas hydrophila]
          Length = 333

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 126/308 (40%), Positives = 193/308 (62%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +   +   +  +  +    T   +  G   + S +++DD + EELE  L+ +D+GV   +
Sbjct: 22  QDKPQREGFFARFKRSMVRTKENIGSGFFGLFSGKKIDDELFEELETQLLTADLGVDTTR 81

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +I++ L+     K +     LY  + + +  ML  + +P   D S +P+VIL+VGVNGVG
Sbjct: 82  RIIDGLVQHADRKQLKDAEALYGLLKQDMGAMLAQVEQPLVIDTSKKPYVILMVGVNGVG 141

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ Y
Sbjct: 142 KTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIY 201

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+++  DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA TGQ
Sbjct: 202 DAIEAARSRGADVLIADTAGRLQNKSNLMEELKKVVRVMKKLDEEAPHEVMLTLDAGTGQ 261

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q ++F    G  G+++TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PFVA
Sbjct: 262 NALSQAKLFSEAVGLDGIVLTKLDGTAKGGVIFAVADKFQIPIRYIGVGEGIDDLRPFVA 321

Query: 304 KDFSAVIT 311
            DF   + 
Sbjct: 322 NDFIEALF 329


>gi|326560132|gb|EGE10522.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis 46P47B1]
 gi|326573383|gb|EGE23351.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis 101P30B1]
          Length = 313

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 133/307 (43%), Positives = 197/307 (64%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
            +E   W  ++  G + +S  L EG+ + ++  +++DD + EE+ED L+ +DIGV    +
Sbjct: 3   ENEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNR 62

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L  +    D+     LY  +   +  +L P   P   D + +P+VIL+VGVNGVGK
Sbjct: 63  IIKNLTEQTARGDLIYSHALYKALKTELTDILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++ + G  VMLAAGDTFR+AA +QL+IW +R     V    GSD+A++ ++
Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIPVVAQGHGSDSASVIFD 182

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+AK +DVLI DTAGRL N + LM  + K++RV+K+ D  APH  + VLDA TGQN
Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ QV++F      TG+ +TK+DGTA+GG +  I     IP+ F+GVGEGI+DL+PF  K
Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302

Query: 305 DFSAVIT 311
           DF   + 
Sbjct: 303 DFVDALL 309


>gi|78486281|ref|YP_392206.1| signal recognition particle-docking protein FtsY [Thiomicrospira
           crunogena XCL-2]
 gi|78364567|gb|ABB42532.1| signal recognition particle-docking protein FtsY [Thiomicrospira
           crunogena XCL-2]
          Length = 373

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 192/313 (61%), Gaps = 2/313 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIG 59
           +S +   +       +L    + T     E +  ++   + +DD + +ELE +L+ +D+G
Sbjct: 55  VSTESQKTTRPGLFSRLKNSLSKTRKGFTENLATLVMGRKEIDDDLLDELEMILLTADVG 114

Query: 60  VAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           V     I++ L  +   K++   ++++  + + +  +L P+++P        P VIL+VG
Sbjct: 115 VEATDTIIQNLTGQVSRKELKEPEKLIQALKQQLETLLEPVTQPLVLPEKEGPFVILMVG 174

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+KK  + G  VMLAAGDTFR+AA++QL+ W +R     V  + G+D+
Sbjct: 175 VNGVGKTTTIGKLAKKFQNEGKSVMLAAGDTFRAAAVEQLQTWGERNQVPVVAQKTGADS 234

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A + A AK +DVLI DTAGRLH  S LM  + K+ RV++++D  APH V+ VLD
Sbjct: 235 AAVIFDAIQSATAKNIDVLIADTAGRLHTQSNLMEELKKVKRVIQKVDSSAPHEVMLVLD 294

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQNAL Q + F+     TGL +TK+DGTA+GG +  +     IPV F+GVGE I+DL
Sbjct: 295 AGTGQNALSQAQQFYEAVEITGLTLTKLDGTAKGGIIFALAEKLGIPVRFIGVGEAIDDL 354

Query: 299 EPFVAKDFSAVIT 311
            PF A +FS  + 
Sbjct: 355 RPFDANEFSEALF 367


>gi|326565395|gb|EGE15572.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis 103P14B1]
 gi|326575720|gb|EGE25643.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis CO72]
          Length = 313

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 132/307 (42%), Positives = 197/307 (64%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
            +E   W  ++  G + +S  L EG+ + ++  +++DD + EE+ED L+ +DIGV    +
Sbjct: 3   ENEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNR 62

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L  +    D+     LY  +   +  +L P   P   D + +P+VIL+VGVNGVGK
Sbjct: 63  IIKNLTEQTARGDLIYSHALYKALKTELTDILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++ + G  VMLAAGDTFR+AA +QL+IW +R     +    GSD+A++ ++
Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIPVIAQGHGSDSASVIFD 182

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+AK +DVLI DTAGRL N + LM  + K++RV+K+ D  APH  + VLDA TGQN
Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ QV++F      TG+ +TK+DGTA+GG +  I     IP+ F+GVGEGI+DL+PF  K
Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302

Query: 305 DFSAVIT 311
           DF   + 
Sbjct: 303 DFVDALL 309


>gi|294669442|ref|ZP_06734519.1| signal recognition particle-docking protein FtsY [Neisseria
           elongata subsp. glycolytica ATCC 29315]
 gi|291308646|gb|EFE49889.1| signal recognition particle-docking protein FtsY [Neisseria
           elongata subsp. glycolytica ATCC 29315]
          Length = 500

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 121/311 (38%), Positives = 194/311 (62%), Gaps = 2/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++  +E+  W  +L +G + +  K+ + +  +    ++D+ + EELE +L+ SD+G+ 
Sbjct: 189 AAEEQPAETGGWTARLKQGLSKSRDKMAKSLAGVFGGGKIDEDLYEELETVLLTSDMGIE 248

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             + +++E+  +   K +S  R L   + E ++ +L PL KP     + +P VI++ G+N
Sbjct: 249 ATEHLMDEVRRRVSLKGLSDGRELRQALKEAVYDLLSPLEKPLEIPDNGQPFVIMMAGIN 308

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R     + S++  D+AA
Sbjct: 309 GAGKTTSIGKLAKYFQSQGKSVILAAGDTFRAAAREQLQEWGERNGVTVI-SQVKGDSAA 367

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+K+D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA 
Sbjct: 368 VCFDAVEAAKARKIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIIVVLDAN 427

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNA+ QV  F    G TGLI+TK+DGTA+GG L  +  +  IPV ++GVGE I+DL P
Sbjct: 428 IGQNAVGQVAAFDDTLGVTGLIVTKLDGTAKGGVLAALASSRPIPVRYIGVGEKIDDLRP 487

Query: 301 FVAKDFSAVIT 311
           F A+ F   + 
Sbjct: 488 FDARAFVDALI 498


>gi|85713492|ref|ZP_01044482.1| cell division transporter substrate-binding protein FtsY
           [Nitrobacter sp. Nb-311A]
 gi|85699396|gb|EAQ37263.1| cell division transporter substrate-binding protein FtsY
           [Nitrobacter sp. Nb-311A]
          Length = 315

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 158/313 (50%), Positives = 219/313 (69%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M++        SW R+L+ G   TS  L   + D+++ R+LD  + +++ED+L+R+D+G 
Sbjct: 1   MNDSTEDKPKQSWWRRLSGGLKRTSTSLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGA 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           AVA++I E +   RY K +S   V   V+  + K+L P+++P   D +  P VILVVGVN
Sbjct: 61  AVAERIAEAVGEGRYDKAISADEVKAVVATEVEKVLAPVARPLVIDGTFTPFVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K+S  G KVM+AAGDTFR+AAI+QLK+W +RT +  +  E GSD+A+
Sbjct: 121 GSGKTTTIGKLAAKLSAEGRKVMMAAGDTFRAAAIEQLKVWGERTGSPVIAGEQGSDSAS 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA+ A   A+ +K DVL+IDTAGRL N + LM  + KM+RV++R+D  APH VL VLDAT
Sbjct: 181 LAFNALTAARNEKRDVLLIDTAGRLQNKAELMNELEKMVRVIRRVDAAAPHVVLLVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL QVE FH  AG TGL+MTK+DGTARGG L+ +   HK+PV+F+GVGEG++DL P
Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGEGVDDLAP 300

Query: 301 FVAKDFSAVITGC 313
           F A+DF+  + G 
Sbjct: 301 FTARDFARAVAGI 313


>gi|75674514|ref|YP_316935.1| cell division transporter substrate-binding protein FtsY
           [Nitrobacter winogradskyi Nb-255]
 gi|74419384|gb|ABA03583.1| signal recognition particle-docking protein FtsY [Nitrobacter
           winogradskyi Nb-255]
          Length = 315

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 158/313 (50%), Positives = 218/313 (69%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           MS+        SW R+L+ G   TS  L   + D+++ R+LD  + +++ED+L+R+D+G 
Sbjct: 1   MSDSSEDQPKQSWWRRLSGGLKRTSASLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           AVA++I E +   RY K +S   V   V+  + K+L P+++P   D + +P VILVVGVN
Sbjct: 61  AVAERIAEAVGEGRYDKAISADEVKAVVATEVEKVLAPVARPLIIDETVKPFVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K+S  G KVM+AAGDTFR+AAIDQLK+W +RT +  +    GSD+A+
Sbjct: 121 GSGKTTTIGKLAAKLSAEGRKVMMAAGDTFRAAAIDQLKVWGERTGSPVIAGAQGSDSAS 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA+ A  +A+ +  DVL+IDTAGRL N + LM  + KM+RV++R+D  APH VL VLDAT
Sbjct: 181 LAFNALTEARNQNSDVLLIDTAGRLQNKAELMNELEKMVRVIRRVDSSAPHVVLLVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL QVE FH  AG TGL+MTK+DGTARGG L+ +   HK+PV+F+GVGEG++DL P
Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGEGVDDLAP 300

Query: 301 FVAKDFSAVITGC 313
           F A DF+  + G 
Sbjct: 301 FTAGDFARAVAGI 313


>gi|71065494|ref|YP_264221.1| signal recognition particle-docking protein FtsY [Psychrobacter
           arcticus 273-4]
 gi|71038479|gb|AAZ18787.1| signal recognition particle-docking protein FtsY [Psychrobacter
           arcticus 273-4]
          Length = 478

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 137/317 (43%), Positives = 199/317 (62%), Gaps = 2/317 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIG 59
           +  ++  S+  SW  ++  G + +   L EG+  I I  + +DD + EE+ED L+ +DIG
Sbjct: 160 LQEEQENSKKGSWFNRMKTGLSKSRKNLAEGMVGILIGGKEIDDELLEEVEDQLLVADIG 219

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           V    +I++ L  +    D+     LY  +   +  +L P   P   D S +P VILVVG
Sbjct: 220 VNATNRIIKSLTEQTDRGDLIYAHSLYKALQTELVDILTPKVAPLIIDTSKQPFVILVVG 279

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+K++   G  VMLAAGDTFR+AA +QL+IW +R +   V    GSD+
Sbjct: 280 VNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGERNNIPVVAQGHGSDS 339

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ ++A + A+AK +DVLI DTAGRL N + LMA + K++RV+++ D  APH  + VLD
Sbjct: 340 ASVIFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADSSAPHEGMIVLD 399

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQNA+ QVE+F+ V   TG+ +TK+DGTA+GG +  I  T  +P+ ++GVGE I+DL
Sbjct: 400 AGTGQNAINQVELFNKVVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDDL 459

Query: 299 EPFVAKDFSAVITGCLD 315
             F  K F A +    D
Sbjct: 460 RAFSPKQFVAALFETDD 476


>gi|91775086|ref|YP_544842.1| signal recognition particle-docking protein FtsY [Methylobacillus
           flagellatus KT]
 gi|91709073|gb|ABE49001.1| signal recognition particle-docking protein FtsY [Methylobacillus
           flagellatus KT]
          Length = 335

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 188/306 (61%), Gaps = 3/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
              SLSW  +L +  A T  +  + +  +    ++D+ V EELE +L+ SD+G+A  Q +
Sbjct: 31  EKPSLSWAERLKRSLAKTRSQWGQQLARLFGGGKIDENVYEELETILLTSDVGIAATQAL 90

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E++ T+   +++S    L + + + + ++L PL KP +   +  P VI++ GVNG GKT
Sbjct: 91  LEQIRTRVKRQNLSDTTQLKEALKQSLLELLTPLEKPLDTTTAQ-PFVIMLAGVNGAGKT 149

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+      G  V++AAGDTFR+AA +QL+ W +R +   V  E   D AA+ ++A
Sbjct: 150 TTIGKLANLFQAQGKSVLIAAGDTFRAAAREQLQAWGERNNVHVVAQE-SGDPAAVIFDA 208

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+ +D+++ DTAGRL     LM  I K+ RV+ +  P APH VL VLD+ TGQNA
Sbjct: 209 VNSAKARGIDIVLADTAGRLPTQLNLMEEIRKVQRVIDKALPGAPHEVLLVLDSNTGQNA 268

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGL+++K+DGTA+GG +  I  +  +P+ ++G+GE I+DL PF A +
Sbjct: 269 VTQVKAFDDALGVTGLVLSKLDGTAKGGVIAAIAQSRPVPIRYIGIGESIDDLRPFKASE 328

Query: 306 FSAVIT 311
           F   + 
Sbjct: 329 FIDALF 334


>gi|326564152|gb|EGE14388.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis 12P80B1]
          Length = 313

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 132/307 (42%), Positives = 197/307 (64%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
            +E   W  ++  G + +S  L EG+ + ++  +++DD + EE+ED L+ +DIGV    +
Sbjct: 3   ENEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNR 62

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L  +    D+     LY  +   +  +L P   P   D + +P+VIL+VGVNGVGK
Sbjct: 63  IIKNLTEQAARGDLIYSHALYKALKTELTDILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++ + G  VMLAAGDTFR+AA +QL+IW +R     +    GSD+A++ ++
Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIAVIAQGHGSDSASVIFD 182

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+AK +DVLI DTAGRL N + LM  + K++RV+K+ D  APH  + VLDA TGQN
Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ QV++F      TG+ +TK+DGTA+GG +  I     IP+ F+GVGEGI+DL+PF  K
Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302

Query: 305 DFSAVIT 311
           DF   + 
Sbjct: 303 DFVDALL 309


>gi|146337532|ref|YP_001202580.1| cell division transporter substrate-binding protein FtsY
           [Bradyrhizobium sp. ORS278]
 gi|146190338|emb|CAL74334.1| Cell division transporter substrate-binding protein FtsY (Signal
           recognition particle receptor) [Bradyrhizobium sp.
           ORS278]
          Length = 315

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 155/315 (49%), Positives = 218/315 (69%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M++    +   SW R+L+ G   TS  L   + D+++ R+LD  + +++ED+L+R+D+G 
Sbjct: 1   MNDTTSETPKRSWWRRLSDGLKRTSGALGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            VA +I E +   RY K +S   V   V+  + K+L P++KP   +  H+P VILVVGVN
Sbjct: 61  QVAARIAEAVGAGRYDKAISADEVKAVVATEVEKVLSPVAKPLTIEPGHKPFVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL++K +  G  VMLAAGDTFR+AAI+QLK+W +RT A  +    GSD+A+
Sbjct: 121 GSGKTTTIGKLAQKFASEGKHVMLAAGDTFRAAAIEQLKVWGERTKAPVIAGAQGSDSAS 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA+ A   A+ +  D+L+IDTAGRL N + LM  + K++RV++++D  APH+VL VLDAT
Sbjct: 181 LAFNAITAAKEQGRDILLIDTAGRLQNKAELMNELEKVVRVIRKVDASAPHAVLLVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL QVE FH  AG TGL+MTK+DGTARGG L+ +    K+PV+F+GVGEG++DL+P
Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALSEKFKLPVHFIGVGEGVDDLQP 300

Query: 301 FVAKDFSAVITGCLD 315
           F AKDF+  I G  D
Sbjct: 301 FAAKDFARAIAGIED 315


>gi|254470691|ref|ZP_05084094.1| signal recognition particle-docking protein FtsY [Pseudovibrio sp.
           JE062]
 gi|211959833|gb|EEA95030.1| signal recognition particle-docking protein FtsY [Pseudovibrio sp.
           JE062]
          Length = 517

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 158/306 (51%), Positives = 217/306 (70%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SW ++L  G + +S  L EGI+ I + R+LD    EELED+LI++D+G+  A  I + 
Sbjct: 209 KKSWFQRLKAGLSRSSNALTEGISSIFTKRKLDADTLEELEDILIQADLGIDTAIAITDR 268

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +   RY K++S + V   +++ I  +L P++KP + +  H+PH++L+VGVNG GKTT IG
Sbjct: 269 VSDGRYDKEISGEEVRAILADEIESVLEPVAKPLDLNIGHKPHIVLMVGVNGTGKTTTIG 328

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KLS  + + G KVMLAAGDTFR+AA++QLK+W  RT A+ V  + G+DAA LAY+A   A
Sbjct: 329 KLSSLLHEQGKKVMLAAGDTFRAAAVEQLKVWGQRTGAEVVARDTGADAAGLAYDAVDAA 388

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            +   DVL+IDTAGRL N + LM  + K+IRV+++  P APH+ L  LDATTGQNAL QV
Sbjct: 389 LSNDTDVLLIDTAGRLQNKAELMDELEKIIRVIRKRVPDAPHTTLLTLDATTGQNALSQV 448

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG TGL+MTK+DGTARGG L+ I   + +PV+F+GVGEG++DLEPF AKDF+A 
Sbjct: 449 EIFGKVAGVTGLVMTKLDGTARGGILVAIARKYGLPVHFIGVGEGVDDLEPFSAKDFAAA 508

Query: 310 ITGCLD 315
           I G  D
Sbjct: 509 IAGKDD 514


>gi|115522346|ref|YP_779257.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris BisA53]
 gi|115516293|gb|ABJ04277.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris BisA53]
          Length = 316

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 153/311 (49%), Positives = 213/311 (68%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           N    S+  SW R+L+ G   TS  +   + + +S R+LD  + EE+ED+L+R+D+G  V
Sbjct: 2   NDTSESKKPSWWRRLSSGLKRTSSSIGTALAEFVSKRKLDRAMLEEIEDVLLRADLGTEV 61

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + +I   +   RY K +S   V   V+  + K+L P+++P   D + +P VIL+VGVNG 
Sbjct: 62  SARIAAAVGEGRYDKMISASDVKEIVAAEVEKVLAPVARPLVIDGAKKPFVILMVGVNGS 121

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ ++S  G KVMLAAGDTFR+AAI+QLK+W +RT +  V    GSD+A+LA
Sbjct: 122 GKTTTIGKLAARLSGEGRKVMLAAGDTFRAAAIEQLKVWGERTGSPVVAGAQGSDSASLA 181

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           + A  QA+ +  DVL+IDTAGRL N + LM  + K++RV++++D  APH+VL VLDAT G
Sbjct: 182 FNALTQAKDEGRDVLLIDTAGRLQNRTELMNELEKVVRVIRKVDSSAPHAVLLVLDATVG 241

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QVE F   AG TGL+MTK+DGTARGG L+ +   HK+PV+F+GVGE ++DL PF 
Sbjct: 242 QNALSQVEAFSRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGESVDDLAPFT 301

Query: 303 AKDFSAVITGC 313
           A DF+  I G 
Sbjct: 302 APDFAKAIAGI 312


>gi|37678296|ref|NP_932905.1| signal recognition particle GTPase [Vibrio vulnificus YJ016]
 gi|37197035|dbj|BAC92876.1| signal recognition particle GTPase [Vibrio vulnificus YJ016]
          Length = 437

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 199/309 (64%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 125 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 184

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+E L  K   +D+     LY  + E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 185 LKIIENLTEKASRRDLKDGEALYGLLKEEMAEILSKVEQPLQVDSSKTPYVILMVGVNGV 244

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+  + G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 245 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 304

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 305 YDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 364

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 365 QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFE 424

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 425 TQEFIDALF 433


>gi|39933286|ref|NP_945562.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris CGA009]
 gi|192288638|ref|YP_001989243.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris TIE-1]
 gi|39652911|emb|CAE25653.1| putative cell division protein FtsY [Rhodopseudomonas palustris
           CGA009]
 gi|192282387|gb|ACE98767.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris TIE-1]
          Length = 315

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 157/310 (50%), Positives = 212/310 (68%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           +    +   SW R+L+ G   TS  +   +++ +S R+LD  + EE+ED+L+R+D+G  V
Sbjct: 2   SDTPENSKQSWWRRLSSGLKRTSSSIGTALSEFVSKRKLDRAMLEEIEDVLLRADLGTEV 61

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A +I + +   RY K +S   V   V+  + K+L P+++P   D  ++P VIL+VGVNG 
Sbjct: 62  AARIAKAVGEGRYDKMISASDVKEIVAAEVEKVLAPVAQPLEVDAGNKPFVILMVGVNGS 121

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKLS + +  G KVMLAAGDTFR+AAIDQLK+W DRT    V    GSDAA LA
Sbjct: 122 GKTTTIGKLSARFASEGHKVMLAAGDTFRAAAIDQLKVWGDRTGTPVVAGAQGSDAAGLA 181

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           + A   A+ +  DVL+IDTAGRL N + LM+ + K++RV+K++D  APH+VL VLDAT G
Sbjct: 182 FNALTAAKEQGRDVLLIDTAGRLQNRTELMSELEKVVRVIKKVDATAPHAVLLVLDATVG 241

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QVE F   AG TGL+MTK+DGTARGG L+ I   HK+PV+F+GVGEG+ DL PF 
Sbjct: 242 QNALSQVEAFTKTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVEDLAPFT 301

Query: 303 AKDFSAVITG 312
           A+DF+  I G
Sbjct: 302 ARDFAKAIAG 311


>gi|316931820|ref|YP_004106802.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris DX-1]
 gi|315599534|gb|ADU42069.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris DX-1]
          Length = 315

 Score =  319 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 155/310 (50%), Positives = 211/310 (68%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           +    +   SW R+L+ G   TS  +   +++ +S R+LD  + EE+ED+L+R+D+G  V
Sbjct: 2   SDTPENSKQSWWRRLSSGLKRTSSSIGTALSEFVSKRKLDRAMLEEIEDVLLRADLGAEV 61

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A +I   +   RY K +S   V   V+  + K+L P+++P   D   +P V+L+VGVNG 
Sbjct: 62  ASRIASAVGEGRYDKMISASDVKEIVAAEVEKVLAPVAQPLVVDAGKKPFVVLMVGVNGS 121

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKLS + +  G KVMLAAGDTFR+AAIDQLK+W +RT    V    GSDAA LA
Sbjct: 122 GKTTTIGKLSARFASEGHKVMLAAGDTFRAAAIDQLKVWGERTGTPVVAGAQGSDAAGLA 181

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           + A   A+ +  DVL+IDTAGRL N + LM+ + K++RV+K++D  APH+VL VLDAT G
Sbjct: 182 FNALTAAKEQGRDVLLIDTAGRLQNRTELMSELEKVVRVIKKVDATAPHAVLLVLDATVG 241

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QVE F   AG TGL+MTK+DGTARGG L+ I   HK+PV+F+GVGEG++DL PF 
Sbjct: 242 QNALSQVEAFTKTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVDDLSPFT 301

Query: 303 AKDFSAVITG 312
           A+DF+  I G
Sbjct: 302 ARDFAKAIAG 311


>gi|323137224|ref|ZP_08072303.1| signal recognition particle-docking protein FtsY [Methylocystis sp.
           ATCC 49242]
 gi|322397582|gb|EFY00105.1| signal recognition particle-docking protein FtsY [Methylocystis sp.
           ATCC 49242]
          Length = 353

 Score =  319 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 150/310 (48%), Positives = 213/310 (68%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +       SW  +LT G A TS  + +G+ DI + R+LD    EELED+L+R+D+GV  A
Sbjct: 32  EAPEEPKRSWWSRLTGGLARTSQAISQGVADIFTKRKLDALTLEELEDVLLRADLGVGAA 91

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +I + +   RY KD+    V   ++  +  +L P++ PF  D S +P ++LVVGVNG G
Sbjct: 92  MRITKAVGKARYEKDIEPDEVRAILAREVEAVLEPVAVPFEIDESKKPFIVLVVGVNGSG 151

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT I KL+ K +  G KV+LAAGDTFR+AA++QL+IW  R  A+ V    G+DAA LA+
Sbjct: 152 KTTTIAKLASKWTGEGKKVVLAAGDTFRAAAVEQLRIWGARLDAEVVAGNEGADAAGLAF 211

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A K+A     D++++DTAGRL N + LMA + K++RV+K+ +P APH+VL VLDAT GQ
Sbjct: 212 DAIKRAGESGADIMLMDTAGRLQNRAELMAELEKIVRVMKKAEPEAPHAVLLVLDATVGQ 271

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA++QVE+F  +AG TGL+MTK+DGTARGG L+ I   + +P++F+GVGEG +DLEPF A
Sbjct: 272 NAMQQVEVFQRMAGVTGLVMTKLDGTARGGILVAIAEAYGLPIHFIGVGEGQDDLEPFTA 331

Query: 304 KDFSAVITGC 313
           +DF+  I G 
Sbjct: 332 RDFARAIAGL 341


>gi|304311581|ref|YP_003811179.1| Cell division protein, SRP docking protein [gamma proteobacterium
           HdN1]
 gi|301797314|emb|CBL45534.1| Cell division protein, SRP docking protein [gamma proteobacterium
           HdN1]
          Length = 416

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 128/306 (41%), Positives = 192/306 (62%), Gaps = 4/306 (1%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68
             S+  ++ +G + T     E +  +++ ++ +D  + EE+E  L+ +D+GV+  Q+IV 
Sbjct: 108 KESFFSRVKRGLSRTRSGFTEAMASLLAGKKAIDADLLEEIETQLLMADVGVSATQRIVT 167

Query: 69  ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKT 125
            L  K   +++     LY  + + +  +L   ++P+        +P VIL+VGVNGVGKT
Sbjct: 168 ALTQKVSRRELVDSDALYHALQQELAALLSGHAEPWQLGKTAEGKPRVILMVGVNGVGKT 227

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K++   G +VMLAAGDTFR+AA++QL++W  R     V    G+D+A++ ++A
Sbjct: 228 TTIGKLAKRLQIEGKQVMLAAGDTFRAAAVEQLQVWGQRNEIAVVAQHTGADSASVIFDA 287

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A AKKVDVLI DTAGRLH  S LM  + K+ RV+++LDP APH VL VLDA TGQNA
Sbjct: 288 LQSATAKKVDVLIADTAGRLHTKSNLMEELKKVKRVMQKLDPQAPHEVLLVLDAGTGQNA 347

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q   F+   G TG+++TK+DGTA+GG +  I     IP+  +GVGE I+DL PF  + 
Sbjct: 348 LSQATQFNEAVGVTGIVLTKLDGTAKGGIVFAIAEKTGIPIRLIGVGETIDDLRPFEPQQ 407

Query: 306 FSAVIT 311
           F   + 
Sbjct: 408 FVKALF 413


>gi|163757350|ref|ZP_02164439.1| putative cell division protein [Hoeflea phototrophica DFL-43]
 gi|162284852|gb|EDQ35134.1| putative cell division protein [Hoeflea phototrophica DFL-43]
          Length = 529

 Score =  318 bits (816), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 172/306 (56%), Positives = 225/306 (73%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
                 W ++L +G + TS +L   IT I + R+LD+   EELED+L+++D+GV  A +I
Sbjct: 221 PEPQGGWWQRLRQGLSRTSGQLTGQITGIFTKRKLDEETLEELEDVLLQADLGVETALRI 280

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            + L + RY KD+S   V   +++ I ++L P++KP   D SH+PHVILVVGVNG GKTT
Sbjct: 281 TDALASGRYGKDISPAEVQKVMADEIARVLEPVAKPLELDLSHKPHVILVVGVNGTGKTT 340

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ K+   GLKV LAAGDTFR+AAI+QLKIW DRT +  V +++G+DAA LAYEAF
Sbjct: 341 TIGKLAAKLHSGGLKVTLAAGDTFRAAAIEQLKIWGDRTGSKVVSTKLGADAAGLAYEAF 400

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A   DVLIIDTAGRL N + LM  + K++RV+ +LDP APH+VLQ LDATTGQNAL
Sbjct: 401 ETARADGADVLIIDTAGRLQNRTELMDELAKVVRVIGKLDPDAPHTVLQTLDATTGQNAL 460

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVE+F  VAG  GL+MTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF A DF
Sbjct: 461 NQVEIFKNVAGVNGLVMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFEAADF 520

Query: 307 SAVITG 312
           ++ I G
Sbjct: 521 ASAIAG 526


>gi|86747488|ref|YP_483984.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris HaA2]
 gi|86570516|gb|ABD05073.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris HaA2]
          Length = 315

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 154/310 (49%), Positives = 213/310 (68%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           +    +   SW R+L+ G   TS  +   +++ IS R+LD  + +E+ED+L+R+D+G  V
Sbjct: 2   SDTPENAKPSWWRRLSSGLKRTSSSIGTALSEFISKRKLDRAMLDEIEDVLLRADLGTEV 61

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A +I + +   RY K +S   V   V+  + K+L P++KP   D + +P V+LVVGVNG 
Sbjct: 62  ATRISDAVGEGRYDKMISAGDVKEIVAAEVEKVLAPVAKPLVIDRAKKPFVVLVVGVNGS 121

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKLS + +  G KVM+AAGDTFR+AAI+QLK+W +RT    +    GSD+A+LA
Sbjct: 122 GKTTTIGKLSARYAAEGHKVMMAAGDTFRAAAIEQLKVWGERTGTPVIAGAQGSDSASLA 181

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           + A   A+ +  DVL+IDTAGRL N + LM  +GK++RV+K++D  APH+VL VLDAT G
Sbjct: 182 FNALTTAKEQARDVLLIDTAGRLQNRTELMNELGKVVRVIKKVDDTAPHAVLLVLDATVG 241

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QVE F   AG TGL+MTK+DGTARGG L+ I   HK+PV+F+GVGEG+ DL PF 
Sbjct: 242 QNALSQVEAFTKTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVEDLAPFT 301

Query: 303 AKDFSAVITG 312
           A+DF+  I G
Sbjct: 302 ARDFAQAIAG 311


>gi|296113141|ref|YP_003627079.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis RH4]
 gi|295920835|gb|ADG61186.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis RH4]
 gi|326560515|gb|EGE10897.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis 7169]
 gi|326565755|gb|EGE15917.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis BC1]
 gi|326570406|gb|EGE20446.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis BC8]
 gi|326571092|gb|EGE21116.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis BC7]
 gi|326577186|gb|EGE27080.1| signal recognition particle-docking protein FtsY [Moraxella
           catarrhalis O35E]
          Length = 313

 Score =  318 bits (816), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 132/307 (42%), Positives = 197/307 (64%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
            +E   W  ++  G + +S  L EG+ + ++  +++DD + EE+ED L+ +DIGV    +
Sbjct: 3   ENEKGGWFSRMKAGLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNR 62

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L  +    D+     LY  +   +  +L P   P   D + +P+VIL+VGVNGVGK
Sbjct: 63  IIKNLTEQTARGDLIYSHALYKALKTELTDILTPKVAPLIIDTTKKPYVILMVGVNGVGK 122

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++ + G  VMLAAGDTFR+AA +QL+IW +R     +    GSD+A++ ++
Sbjct: 123 TTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIAVIAQGHGSDSASVIFD 182

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+AK +DVLI DTAGRL N + LM  + K++RV+K+ D  APH  + VLDA TGQN
Sbjct: 183 AMQSAKAKGIDVLIADTAGRLQNKTHLMNELEKVVRVMKKGDETAPHETMIVLDAGTGQN 242

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ QV++F      TG+ +TK+DGTA+GG +  I     IP+ F+GVGEGI+DL+PF  K
Sbjct: 243 AINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPK 302

Query: 305 DFSAVIT 311
           DF   + 
Sbjct: 303 DFVDALL 309


>gi|144898020|emb|CAM74884.1| Signal recognition particle GTPase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 357

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 139/312 (44%), Positives = 201/312 (64%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             + +A    SW+ +L  G   +S KL +G+ D+ + R+LDD   E+LEDLLI +D+GV 
Sbjct: 45  PAEILAEAPQSWLSRLKSGLTKSSSKLTQGLGDLFTKRKLDDEALEDLEDLLITTDLGVG 104

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            A ++ + L   R+ +DV  + +   ++E + ++L P++KP       RPHV+LVVGVNG
Sbjct: 105 TAARVTKRLAKTRFGQDVGAEEIKQVLAEEVAQILAPVAKPLQPACVARPHVVLVVGVNG 164

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGK++K   D G +V LAAGDTFR+AA++QLK+W +RT       E G+DAA L
Sbjct: 165 SGKTTTIGKMAKHFKDQGKQVALAAGDTFRAAAVEQLKVWGERTQCPVFSRETGADAAGL 224

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A  ++  +  D+L +DTAGRL N + LM  + K++RV+K+ D  APH VL VLDAT 
Sbjct: 225 VFDAMAESAKRGDDLLFVDTAGRLQNKADLMEELRKVVRVIKKQDETAPHDVLLVLDATV 284

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA  QVE+F  +   TGL++TK+DGTARGG L+ +     +PV+ +GVGE   DL PF
Sbjct: 285 GQNAHSQVEVFKDMVDVTGLVLTKLDGTARGGVLVALAEKFALPVHAIGVGEKAEDLRPF 344

Query: 302 VAKDFSAVITGC 313
            A  F+  + G 
Sbjct: 345 DANAFARSLVGL 356


>gi|299133082|ref|ZP_07026277.1| signal recognition particle-docking protein FtsY [Afipia sp. 1NLS2]
 gi|298593219|gb|EFI53419.1| signal recognition particle-docking protein FtsY [Afipia sp. 1NLS2]
          Length = 318

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 160/312 (51%), Positives = 217/312 (69%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M++        SW ++L+ G   TS  +   +TD++S R+LD  + E +ED+L+R+D+G 
Sbjct: 1   MTDTPQDKPKQSWWQRLSAGLKRTSGSIGGALTDLVSKRKLDRAMLEGIEDVLLRADLGT 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            VA +I  ++   RY KDVS Q V   V+  + K+L P++KP   D S +P VILVVGVN
Sbjct: 61  EVAARIAAKVGEGRYDKDVSAQDVQEIVAAEVEKVLAPVAKPLVIDESQKPFVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++  G +VMLAAGDTFR+AAI+QLK+W +RT    V    GSD+A+
Sbjct: 121 GSGKTTTIGKLAAKLTAEGRRVMLAAGDTFRAAAIEQLKVWGERTGVPVVARAHGSDSAS 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++A  +A+    DVL+IDTAGRL N + LM  + K+ RV++++D  APH+VL VLDAT
Sbjct: 181 LAFDAASEAKTDNRDVLLIDTAGRLQNKAELMVELEKVARVIRKVDASAPHAVLLVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL QVE F   AG TGL+MTK+DGTARGG L+ I  T+K+PV+F+GVGEGI+DL P
Sbjct: 241 VGQNALSQVEAFRKTAGVTGLVMTKLDGTARGGILVAISETYKLPVHFIGVGEGIDDLAP 300

Query: 301 FVAKDFSAVITG 312
           F A DF+  I G
Sbjct: 301 FTAHDFALAIAG 312


>gi|49474822|ref|YP_032864.1| cell division protein ftsY [Bartonella quintana str. Toulouse]
 gi|49240326|emb|CAF26808.1| Cell division protein ftsY [Bartonella quintana str. Toulouse]
          Length = 407

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 156/312 (50%), Positives = 219/312 (70%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
                V  +  +W R+L KG A +S +L E I ++    +LD    ++LED+LI++D+GV
Sbjct: 93  FPMSSVEQKKTAWFRRLQKGLALSSQRLSESIGELFVKEKLDKDTLQKLEDILIQADLGV 152

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A  I + + + RY K +S   +   ++  I K+L P++ P   D +H+PHVIL+VGVN
Sbjct: 153 ETAAHITDTIASSRYEKSLSPDNIHTIMANEIEKILEPVAIPLELDLNHKPHVILLVGVN 212

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++  GLKVMLAA D FR+AAI+QL IW++R  A  V +++G+DAA+
Sbjct: 213 GTGKTTTIGKLAAKLTKGGLKVMLAACDMFRAAAIEQLHIWSERIGAPVVSTKLGADAAS 272

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++A+++A+    DVLIIDTAGRL N + LM  + K+IRVL + +PHAPH++LQ LDAT
Sbjct: 273 LAFDAYEKAKKANSDVLIIDTAGRLQNKTELMDELAKIIRVLGKHNPHAPHTILQTLDAT 332

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QVE+F  +AG  GL+MTK+DGTARGG L+ I   +K+PVYF+G+GE I DL+P
Sbjct: 333 TGQNALNQVEIFRDIAGVNGLVMTKLDGTARGGILVAIAAKYKLPVYFIGIGEDIEDLQP 392

Query: 301 FVAKDFSAVITG 312
           F A DF+  I G
Sbjct: 393 FSASDFAKTIAG 404


>gi|94499827|ref|ZP_01306363.1| signal recognition particle-docking protein FtsY [Oceanobacter sp.
           RED65]
 gi|94428028|gb|EAT13002.1| signal recognition particle-docking protein FtsY [Oceanobacter sp.
           RED65]
          Length = 359

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 123/303 (40%), Positives = 190/303 (62%), Gaps = 2/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             +  ++  G + T   L EG+ D++   + +D+ + E++E  L+ +DIG+   Q I+++
Sbjct: 53  KGFFARIKAGLSRTRSGLSEGLGDLLLGKKEIDEDLLEDIETQLLMADIGINATQAIIDD 112

Query: 70  LLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   K++     L   + + +  +L P   P     S +P VIL+VGVNGVGKTT I
Sbjct: 113 LTERSSRKELKDSEALLEALKQHLKDILEPCHAPLEIPQSDKPFVILMVGVNGVGKTTTI 172

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++K+    G  VMLAAGDTFR+AA++QL+ W +R     V    G+D+A++ Y+A + 
Sbjct: 173 GKMAKRFQSQGKSVMLAAGDTFRAAAVEQLQTWGERNKVPVVAQHTGADSASVIYDAVQS 232

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           AQ+K VDV+I DTAGRL N + LM  + K++RV+++LD  APH V+ VLDA TGQNAL Q
Sbjct: 233 AQSKGVDVVIADTAGRLQNKANLMQELEKVVRVMRKLDDTAPHEVMLVLDAGTGQNALSQ 292

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G + L ++K+DGTA+GG +  I    ++PV F+GVGE I+DL PF  ++F  
Sbjct: 293 AKIFQEAVGVSSLTLSKLDGTAKGGVIFAIAKELQLPVRFIGVGEQIDDLRPFNHEEFIE 352

Query: 309 VIT 311
            + 
Sbjct: 353 ALF 355


>gi|92116024|ref|YP_575753.1| signal recognition particle-docking protein FtsY [Nitrobacter
           hamburgensis X14]
 gi|91798918|gb|ABE61293.1| signal recognition particle-docking protein FtsY [Nitrobacter
           hamburgensis X14]
          Length = 315

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 158/313 (50%), Positives = 217/313 (69%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           MS+        SW R+L+ G   TS  L   + D+++ R+LD  + +++ED+L+R+D+G 
Sbjct: 1   MSDSTDDKPKQSWWRRLSGGLKRTSSSLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           AVA++I   +   RY K +S   V   V+  + K+L  ++KP   D +H+P VILVVGVN
Sbjct: 61  AVAERIAAAVGEGRYDKAISADEVKAVVATEVEKVLAAVAKPLVVDETHKPFVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K+S  G KVM+AAGDTFR+AAI+QL++W +RT +  V    GSDAA+
Sbjct: 121 GSGKTTTIGKLAAKLSAEGRKVMMAAGDTFRAAAIEQLQVWGERTGSPVVAGAQGSDAAS 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA+ A   A+  + DVL+IDTAGRL N + LM  + K++RV++R+D  APH+VL VLDAT
Sbjct: 181 LAFNALTAARDDRRDVLLIDTAGRLQNKAELMNELEKVVRVIRRVDAAAPHAVLLVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL QVE FH  AG TGL+MTK+DGTARGG L+ +   HK+PV+F+GVGEG++DL P
Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALAEKHKLPVHFIGVGEGVDDLAP 300

Query: 301 FVAKDFSAVITGC 313
           F A DF+  I G 
Sbjct: 301 FTAHDFAKAIAGI 313


>gi|293393950|ref|ZP_06638256.1| cell division protein FtsY [Serratia odorifera DSM 4582]
 gi|291423510|gb|EFE96733.1| cell division protein FtsY [Serratia odorifera DSM 4582]
          Length = 608

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 129/316 (40%), Positives = 196/316 (62%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 294 VTQEQERPSKEGFFARLKRSLIKTKQNLGSGFIGLFRGKKIDDDLFEELEEQLLIADVGV 353

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+E L      K +     LY  + E + ++L  + +P +      P+VIL+VGV
Sbjct: 354 ETTRKIIESLTLHASRKQLKDAEALYGKLKEEMSEILAKVDQPLDVS-GKTPYVILMVGV 412

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A
Sbjct: 413 NGVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSA 472

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N + LM  + K++RV+K+LD HAPH V+  LDA
Sbjct: 473 SVIFDAVQAAKARGVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEHAPHEVMLTLDA 532

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL 
Sbjct: 533 STGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLR 592

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 593 PFKADDFIEALFARED 608


>gi|49476311|ref|YP_034352.1| cell division protein ftsY [Bartonella henselae str. Houston-1]
 gi|49239119|emb|CAF28423.1| Cell division protein ftsY [Bartonella henselae str. Houston-1]
          Length = 416

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 157/312 (50%), Positives = 220/312 (70%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +    V  E  +W  +L KG A +S +L + I ++    +LD    +ELED+LI++D+GV
Sbjct: 102 LPVSSVEQEKRAWFGRLKKGLALSSQRLSKSIGEVFVKEKLDKDKLQELEDILIQADLGV 161

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A  I + L + RY K++S   V   ++  I K+L P++ P   D +H+PHVIL+VGVN
Sbjct: 162 ETATHITDTLASSRYKKNLSPDDVHSIIANEIEKVLKPVAIPLELDLNHKPHVILLVGVN 221

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++  GLKVMLAAGDTFR+AAI+QL IW +R  A  + +++G+DAA+
Sbjct: 222 GTGKTTTIGKLAAKLTKGGLKVMLAAGDTFRAAAIEQLHIWGERIGAPVISTKLGADAAS 281

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++A+++A+    DVLIIDTAGRL N + LM  + K+IRVL + +P APH++LQ LDAT
Sbjct: 282 LAFDAYEKAKKANSDVLIIDTAGRLQNKTELMDELAKIIRVLGKHNPQAPHTILQTLDAT 341

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV++F  +AG  GL+MTK+DGTARGG L+ I   +K+PVYF+G+GE I DL+P
Sbjct: 342 TGQNALNQVDIFRDIAGVNGLVMTKLDGTARGGILVAIAAKYKLPVYFIGIGENIEDLQP 401

Query: 301 FVAKDFSAVITG 312
           F A DF+  I G
Sbjct: 402 FSASDFAKTIAG 413


>gi|304392647|ref|ZP_07374587.1| cell division protein FtsY [Ahrensia sp. R2A130]
 gi|303295277|gb|EFL89637.1| cell division protein FtsY [Ahrensia sp. R2A130]
          Length = 585

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 150/302 (49%), Positives = 210/302 (69%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +W  ++  G + +S +L   +  + + ++LD+   E+LED+L+++D+GV  A  I + L 
Sbjct: 278 TWFARMRSGLSRSSNQLTSNVAAVFTKKKLDEETLEQLEDVLLQADLGVETAVAITDALA 337

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +R  KD++   V   ++  I K L P++     D  H PHVILVVGVNG GKTT IGKL
Sbjct: 338 DQRMGKDITDLEVREFMAAEIEKTLDPVAAELELDLEHTPHVILVVGVNGSGKTTTIGKL 397

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S+K+ DAG   +L AGDTFR+AAI+QLKIW DRT +     ++G+D+A LAY+A+ +A  
Sbjct: 398 SQKLYDAGFSTLLVAGDTFRAAAIEQLKIWGDRTQSPVAFRDLGADSAGLAYDAYAKALD 457

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV+++DTAGRL N + LM  + K+IRVLK+ DP APH+VL  LDATTGQNAL QVE+
Sbjct: 458 EGQDVMLMDTAGRLQNKTELMDELRKIIRVLKKQDPTAPHTVLLTLDATTGQNALSQVEI 517

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG  GL+MTK+DGTARGG ++ +   HK+PVYF+GVGE ++DLEPF A+DF+  I 
Sbjct: 518 FKEVAGVNGLVMTKLDGTARGGIMVSLAAKHKLPVYFIGVGEQVDDLEPFEARDFARSIA 577

Query: 312 GC 313
           G 
Sbjct: 578 GL 579


>gi|91974997|ref|YP_567656.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris BisB5]
 gi|91681453|gb|ABE37755.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris BisB5]
          Length = 315

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 153/310 (49%), Positives = 213/310 (68%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           +    ++  SW R+L+ G   TS  +   +++ IS R+LD  + +E+ED+L+R+D+G  V
Sbjct: 2   SDTPETQKPSWWRRLSSGLKRTSSSIGTALSEFISKRKLDRAMLDEIEDVLLRADLGTEV 61

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A +I + +   RY K +S   V   V+  + K+L P++KP   D + +P V+LVVGVNG 
Sbjct: 62  ASRISDAVGEGRYDKMISASDVKEIVASEVEKVLAPVAKPLVIDDAKKPFVVLVVGVNGS 121

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKLS + +  G KVM+AAGDTFR+AAI+QLK+W +RT    +    GSD+A+LA
Sbjct: 122 GKTTTIGKLSARFAAEGRKVMMAAGDTFRAAAIEQLKVWGERTGTPVIAGAQGSDSASLA 181

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           + A   A+ +  DVL+IDTAGRL N   LM+ + K++RV+K++D  APH+VL VLDAT G
Sbjct: 182 FNALTAAKEQGRDVLLIDTAGRLQNRKELMSELEKVVRVIKKVDDTAPHAVLLVLDATVG 241

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QVE F   AG TGL+MTK+DGTARGG L+ I   HK+PV+F+GVGEG+ DL PF 
Sbjct: 242 QNALSQVEAFTRTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVEDLSPFT 301

Query: 303 AKDFSAVITG 312
           A+DF+  I G
Sbjct: 302 ARDFAQAIAG 311


>gi|119473191|ref|ZP_01614888.1| Cell division transporter substrate-binding protein FtsY
           [Alteromonadales bacterium TW-7]
 gi|119444555|gb|EAW25870.1| Cell division transporter substrate-binding protein FtsY
           [Alteromonadales bacterium TW-7]
          Length = 750

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 126/301 (41%), Positives = 191/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T + +  G + I S +++DD + EELE  L+ +D+GV    K+++ L 
Sbjct: 443 GFFSRLKKGLLKTRVNIGAGFSSIFSGKKIDDDLFEELETQLLTADLGVDTTMKLIDRLT 502

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K +     LY++  + +  ML    +P       +P VIL+VGVNGVGKTT IGK
Sbjct: 503 DGANRKQLKDGDALYELMKQEMAAMLKTAEQPLTIPAEKKPFVILMVGVNGVGKTTTIGK 562

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+  + G  VMLAAGDTFR+AA++QL++W +R S   +    G+D+A++ ++AF+ A+
Sbjct: 563 LAKQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVVFDAFQAAK 622

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VDVLI DTAGRL N   LM  + K+ RV+K++DP APH V+  +DA TGQNA+ QV 
Sbjct: 623 ARNVDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVN 682

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ ++K+DGTA+GG +  +     IP+ ++GVGEGI+DL  F + DF   +
Sbjct: 683 LFNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIDDLRSFKSDDFIDAL 742

Query: 311 T 311
            
Sbjct: 743 F 743


>gi|88858436|ref|ZP_01133078.1| Cell division transporter substrate-binding protein FtsY
           [Pseudoalteromonas tunicata D2]
 gi|88820053|gb|EAR29866.1| Cell division transporter substrate-binding protein FtsY
           [Pseudoalteromonas tunicata D2]
          Length = 565

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 194/312 (62%), Gaps = 1/312 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + + +  S+  +L K    T   +  G  +I S +++DD + EELE  L+ +D+GV    
Sbjct: 253 EESPKKDSFFSRLKKSLIKTKQSIGSGFINIFSGKKIDDELFEELETQLLTADLGVDTTL 312

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           K++  L      K +     LYD+  + + +ML    +  + + +  P VIL+VGVNGVG
Sbjct: 313 KLIARLTEAADRKQLKDGDALYDLLKQEMAQMLKSAEQALDTEKATGPFVILMVGVNGVG 372

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ +
Sbjct: 373 KTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVIF 432

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +AF+ A+A+KVD+LI DTAGRL N   LM  + K+ RV+K+LDP APH V+  +DA TGQ
Sbjct: 433 DAFQAAKARKVDILIADTAGRLQNKDNLMQELEKIARVMKKLDPDAPHEVMLTIDAGTGQ 492

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ QV++F+   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI+DL  F +
Sbjct: 493 NAISQVDLFNKAVGLTGISLTKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIDDLRAFKS 552

Query: 304 KDFSAVITGCLD 315
            +F   +    D
Sbjct: 553 DEFINALFSQDD 564


>gi|294789648|ref|ZP_06754882.1| signal recognition particle-docking protein FtsY [Simonsiella
           muelleri ATCC 29453]
 gi|294482449|gb|EFG30142.1| signal recognition particle-docking protein FtsY [Simonsiella
           muelleri ATCC 29453]
          Length = 480

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 190/312 (60%), Gaps = 2/312 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M  +++ S+ L W  +L +G   +  ++ + +  +    ++D+ + EELE  L+ SD+G+
Sbjct: 168 MPPEQIESDKLGWTARLKQGLTKSRNQMAKSLAGVFGGGKIDEDLYEELETTLLISDMGI 227

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              ++++ E+  +   K +     L   + + ++++L PL KP     + +P VI++ G+
Sbjct: 228 EATEQLMNEVRKRVSLKGLKDGNELRTTLKDALYELLKPLEKPLEIPNNGQPFVIMMAGI 287

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+K     G  VMLAAGDTFR+AA +QL+ W  R     + S+   D+A
Sbjct: 288 NGAGKTTSIGKLAKYFQAQGKSVMLAAGDTFRAAAREQLQEWGARNGVTVI-SQASGDSA 346

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A + A+AKK+DV++ DTAGRL     LM  I K+ RVL++  P APH V+ VLDA
Sbjct: 347 AVCFDAVESAKAKKIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEVMVVLDA 406

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             GQNA+ QV  F    G TGLI+TK+DGTA+GG L  +     IPV ++GVGEGI+DL 
Sbjct: 407 NIGQNAINQVVAFDDALGVTGLIVTKLDGTAKGGVLAALASNRPIPVRYIGVGEGIDDLR 466

Query: 300 PFVAKDFSAVIT 311
           PF A+ F   + 
Sbjct: 467 PFDARAFVDALL 478


>gi|254292478|ref|YP_003058501.1| signal recognition particle-docking protein FtsY [Hirschia baltica
           ATCC 49814]
 gi|254041009|gb|ACT57804.1| signal recognition particle-docking protein FtsY [Hirschia baltica
           ATCC 49814]
          Length = 446

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 137/309 (44%), Positives = 208/309 (67%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            ++   +  ++T+G   +S KL +GI+ + + ++LDD   EELEDLLI SD+G +VA ++
Sbjct: 133 ETKKPGFFARMTQGLQRSSSKLADGISSVFTKKKLDDDTLEELEDLLISSDLGASVAMRV 192

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            + +   R+ K+V+ + +   +++ I  +L P  +  +      P V+L VGVNG GKTT
Sbjct: 193 CDNIRKDRFDKEVTDEEIKQALAQEITNVLKPREEILDLSDGPSPRVVLFVGVNGSGKTT 252

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGK++ K+S  G  ++LAAGDTFR+AA++QLK+WA+R +A F+    G+D+A LAY+A 
Sbjct: 253 TIGKIASKLSAQGANILLAAGDTFRAAAVEQLKVWAERANAGFLSRPDGADSAGLAYDAV 312

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           KQA  +  D+++IDTAGRL N + LM  + K++R +++++P APH V+ VLDAT GQNAL
Sbjct: 313 KQATTENRDLVLIDTAGRLQNRTELMDELAKVVRAIRKIEPTAPHEVILVLDATVGQNAL 372

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVE F   AG TGL+MTK+DGTA+GG L+ I   H +P++F+G+GE   DL PF A  F
Sbjct: 373 SQVEAFKHTAGVTGLVMTKLDGTAKGGVLVAIADKHALPIHFVGIGEKAEDLHPFSASAF 432

Query: 307 SAVITGCLD 315
           +  + G  D
Sbjct: 433 ANALVGLSD 441


>gi|239994821|ref|ZP_04715345.1| signal recognition particle GTPase [Alteromonas macleodii ATCC
           27126]
          Length = 382

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 196/313 (62%), Gaps = 6/313 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S   +L +  + T   L  GI  +   + +DD + E+LE  L+ +D+G+   QKI++ L 
Sbjct: 69  SLFARLKESLSRTKENLGSGIVSLFKGKTIDDELYEDLETQLLVADVGMDTTQKIIDHLT 128

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNW-----DFSHRPHVILVVGVNGVGKT 125
                KD+     L D+  + +  ML  +++P +      D S  P VIL+VGVNGVGKT
Sbjct: 129 DSASRKDLKDAEALLDIMKQQMSGMLSQVNQPLSEVMQAHDSSEGPFVILMVGVNGVGKT 188

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A
Sbjct: 189 TTIGKLAKQFQQEGKKVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVLYDA 248

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+++  D+LI DTAGRL N + LM  + K++RV+K+++P+APH V+  LDA TGQNA
Sbjct: 249 LEAAKSRGTDILIADTAGRLQNKNNLMEELKKVVRVMKKINPNAPHEVMLTLDAGTGQNA 308

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q ++F+   G TG+ +TK+DGTA+GG +  I    KIP+ ++GVGE I+DL  F  ++
Sbjct: 309 ISQAKLFNEAVGLTGITLTKLDGTAKGGVIFSIADKFKIPIRYIGVGESIDDLRQFDGQE 368

Query: 306 FSAVITGCLDYGE 318
           F   +   +D  E
Sbjct: 369 FIDALFSEMDTPE 381


>gi|296448346|ref|ZP_06890235.1| signal recognition particle-docking protein FtsY [Methylosinus
           trichosporium OB3b]
 gi|296254138|gb|EFH01276.1| signal recognition particle-docking protein FtsY [Methylosinus
           trichosporium OB3b]
          Length = 346

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 151/312 (48%), Positives = 218/312 (69%), Gaps = 3/312 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SW  +LT G + +S  + +GI+D+ + R+LD    EELED+L+R+D+G+A AQ+I   
Sbjct: 32  KRSWWERLTGGLSRSSQAIVQGISDLFTKRKLDALTLEELEDVLVRADLGLAAAQRISAT 91

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +   RY K +    V   ++E + ++L P+++PF  D S +P ++LVVGVNG GKTT I 
Sbjct: 92  VGKARYEKTIGPDEVRAILAEEVERVLAPVARPFELDESKKPFIVLVVGVNGSGKTTTIA 151

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K +  G KVMLAAGDTFR+AA++QL+ W +R +     +  G+DAA LA++A K A
Sbjct: 152 KLAAKWTAEGRKVMLAAGDTFRAAAVEQLRFWGERLNVSVCYAPEGADAAGLAFDAIKSA 211

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D+L++DTAGRL N + LMA + K++RV+K+ +P APH+VL VLDAT GQNA+ QV
Sbjct: 212 RERGSDILLMDTAGRLQNRTELMAELAKIVRVMKKAEPEAPHAVLLVLDATVGQNAVAQV 271

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F  +AG TGL+MTK+DGTARGG L+ I   + +P++F+GVGEG  DLEPF A+DF+  
Sbjct: 272 DVFGKIAGVTGLVMTKLDGTARGGILVAIAEAYGLPIHFIGVGEGAEDLEPFTARDFARA 331

Query: 310 ITGC-LDYGEEK 320
           I G   D  EEK
Sbjct: 332 IAGLEGD--EEK 341


>gi|307824536|ref|ZP_07654761.1| signal recognition particle-docking protein FtsY [Methylobacter
           tundripaludum SV96]
 gi|307734520|gb|EFO05372.1| signal recognition particle-docking protein FtsY [Methylobacter
           tundripaludum SV96]
          Length = 664

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 2/298 (0%)

Query: 16  KLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +L      T   L   +  I +  + +D+ + EE+E  L+ +DIGV    +I++ L    
Sbjct: 364 RLKTQLKRTRSGLSGVLAHIPLGRQEIDEDLLEEIEASLLMADIGVDATTEIIKRLTESV 423

Query: 75  YAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
               ++    L   + + +  ML P SK  +     +P VILVVGVNG GKTT IGKL+K
Sbjct: 424 ERHQLNDGEALSAALKQELLIMLQPCSKNLHIPKQDKPFVILVVGVNGAGKTTTIGKLAK 483

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           ++   G  VMLAAGDTFR+AA++QL+ W +R +   V    G+D+A++ Y+  + AQAK 
Sbjct: 484 RLQAQGHSVMLAAGDTFRAAAVEQLQTWGERNNIHVVAQHTGADSASVIYDGVQSAQAKG 543

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DVLI DTAGRLH  S LM  + K+ R++ +LD  APH VL VLDA TGQNAL Q ++F+
Sbjct: 544 IDVLIADTAGRLHTKSNLMDELKKVKRIMSKLDETAPHEVLLVLDAGTGQNALSQTKLFN 603

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                TGL++TK+DGTA+GG +  +     IP+ F+G+GEGI+DL+ F A  F   + 
Sbjct: 604 ETVELTGLVLTKLDGTAKGGIIFALAKQFGIPIRFIGIGEGIDDLQDFDADAFVNALF 661


>gi|226939167|ref|YP_002794238.1| FtsY [Laribacter hongkongensis HLHK9]
 gi|226714091|gb|ACO73229.1| FtsY [Laribacter hongkongensis HLHK9]
          Length = 400

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 129/312 (41%), Positives = 192/312 (61%), Gaps = 3/312 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++++  A    SW  +L  G + T  KL + +  +    ++D+ + +ELE +L+ SD+GV
Sbjct: 90  VASEAAAPRKQSWSERLKAGLSKTRDKLGKQLAGLFGGGQIDEDLYDELETILLTSDMGV 149

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           A  + ++E++  +   K +     L D + E +  ++ PL KP N D S  P VI++ GV
Sbjct: 150 AATRHLLEDVRRRVSLKGLKDASQLKDALKESLMDLIGPLEKPLNLDRSG-PLVIMMAGV 208

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+K        V+LAAGDTFR+AA +QL  W  R     + S+ G DAA
Sbjct: 209 NGAGKTTSIGKLAKYFQGHRKSVLLAAGDTFRAAAREQLAEWGARNQVTVI-SQQGGDAA 267

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A + AQA+K+D+++ DTAGRL     LM  I K+ RV+ +  P APH +L VLDA
Sbjct: 268 AVCFDAVQAAQARKIDIVLADTAGRLPTQLHLMEEIRKVKRVISKALPQAPHEILLVLDA 327

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNAL QV+ F    G TGLI+TK+DGTA+GG +  I     +P+YF+GVGE ++DL 
Sbjct: 328 NTGQNALAQVKAFDDALGLTGLILTKLDGTAKGGVIAAIARERPVPMYFVGVGETLDDLR 387

Query: 300 PFVAKDFSAVIT 311
           PF A+++   + 
Sbjct: 388 PFSAREYVDALF 399


>gi|148251983|ref|YP_001236568.1| signal recognition particle-docking protein FtsY [Bradyrhizobium
           sp. BTAi1]
 gi|146404156|gb|ABQ32662.1| signal recognition particle-docking protein FtsY [Bradyrhizobium
           sp. BTAi1]
          Length = 315

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 156/315 (49%), Positives = 220/315 (69%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M++    +  LSW R+L+ G   TS  L   + D+++ R+LD  + +++ED+L+R+D+G 
Sbjct: 1   MNDTTSETPKLSWWRRLSAGLKRTSGALGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            VA +I E +   RY K +S   V   V+  + K+L P++KP   + SH+P VILVVGVN
Sbjct: 61  QVAARIAEAVGAGRYDKAISADEVKAVVATEVEKVLSPVAKPLVVEASHKPFVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K +  G +VMLAAGDTFR+AAI+QLK+W +RT A  +    GSD+A+
Sbjct: 121 GSGKTTTIGKLAAKFASDGKQVMLAAGDTFRAAAIEQLKVWGERTKAPVIAGAQGSDSAS 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA+ A   A+ +  D+L+IDTAGRL N + LM  + K++RV++++D  APH+VL VLDAT
Sbjct: 181 LAFTAITAAKEQARDILLIDTAGRLQNKAELMNELEKVVRVIRKVDASAPHAVLLVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL QVE FH  AG TGL+MTK+DGTARGG L+ +    K+PV+F+GVGEG++DL+P
Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALSEKFKLPVHFIGVGEGVDDLQP 300

Query: 301 FVAKDFSAVITGCLD 315
           F A+DF+  I G  D
Sbjct: 301 FAARDFARAIAGIDD 315


>gi|53802591|ref|YP_112672.1| cytochrome oxidase assembly family protein/cell division protein
           FtsY [Methylococcus capsulatus str. Bath]
 gi|53756352|gb|AAU90643.1| cytochrome oxidase assembly family protein/cell division protein
           FtsY [Methylococcus capsulatus str. Bath]
          Length = 671

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 186/301 (61%), Gaps = 2/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +   +L      T   L  G+   +   R+D  + +E+E+ L+ +D+GV V ++I+ +L 
Sbjct: 360 NLFERLRGQLGKTRSSLT-GLLSALGRGRIDRALLDEIEEQLLMADVGVPVTREIIADLG 418

Query: 72  TKRYAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           +    ++ +  R +   +   +  ++ P S P       RP VILVVGVNGVGKTT IGK
Sbjct: 419 SDLDRQEPADGRALRDRLRGRLLDIVRPCSVPLVIPPEVRPFVILVVGVNGVGKTTTIGK 478

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K++ + G  VMLAAGDTFR+AA++QL+ W +R     +    G+D+A++ Y+A + A+
Sbjct: 479 LAKRLQNEGHSVMLAAGDTFRAAAVEQLQTWGERNKIAVIAQHSGADSASVIYDAVEAAR 538

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VD+LI DTAGRLH  S LM  + K+ R++ RLD  APH VL VLDA TGQNAL Q  
Sbjct: 539 ARGVDILIADTAGRLHTKSNLMEELSKIKRIIGRLDETAPHEVLLVLDAGTGQNALSQAR 598

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TGL++TK+DGTA+GG +  +     IP+ F+G+GEGI+DL  F A  F   +
Sbjct: 599 LFNEAVGLTGLVLTKLDGTAKGGVIFALARQFGIPIRFIGIGEGIDDLRDFDAVQFIDAL 658

Query: 311 T 311
            
Sbjct: 659 F 659


>gi|315127796|ref|YP_004069799.1| cell division transporter substrate-binding protein
           [Pseudoalteromonas sp. SM9913]
 gi|315016310|gb|ADT69648.1| cell division transporter substrate-binding protein
           [Pseudoalteromonas sp. SM9913]
          Length = 498

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 124/305 (40%), Positives = 190/305 (62%), Gaps = 1/305 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
            +   +  +L KG   T + +  G   I S +++DD + EELE  L+ +D+GV    K++
Sbjct: 187 PKKEGFFSRLKKGLLKTRVNIGSGFASIFSGKKIDDELFEELETQLLTADLGVDTTMKLI 246

Query: 68  EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           + L      K +     LY++  + +  ML    +P       +P VIL+VGVNGVGKTT
Sbjct: 247 DSLTDAADRKQLKDGDALYELMKQEMATMLKTAEQPLEIPADKKPFVILMVGVNGVGKTT 306

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGK++K+  + G  VMLAAGDTFR+AA++QL++W +R S   +    G+D+A++ ++AF
Sbjct: 307 TIGKMAKQFQNQGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVVFDAF 366

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ VDVLI DTAGRL N   LM  + K+ RV+K++DP APH V+  +DA TGQNA+
Sbjct: 367 QAAKARNVDVLIADTAGRLQNKDNLMQELEKIARVMKKVDPDAPHEVMLTIDAGTGQNAI 426

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QV +F+   G TG+ ++K+DGTA+GG +  +     IP+ ++GVGE I+DL  F + DF
Sbjct: 427 SQVNLFNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGESIDDLRTFKSDDF 486

Query: 307 SAVIT 311
              + 
Sbjct: 487 IDALF 491


>gi|77359320|ref|YP_338895.1| cell division transporter substrate-binding protein
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874231|emb|CAI85452.1| Cell division transporter substrate-binding protein FtsY
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 651

 Score =  316 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 193/312 (61%), Gaps = 2/312 (0%)

Query: 2   SNQKVAS-ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           + QKV   +   +  +L KG   T + +  G   I S +++DD + EELE  L+ +D+GV
Sbjct: 333 AAQKVEKPKKEGFFSRLKKGLLKTRVNIGSGFASIFSGKKIDDDLFEELETQLLTADLGV 392

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               K+++ L      K +     LY++  + +  ML    +P       +P VIL+VGV
Sbjct: 393 DTTMKLIDRLTDAANRKQLKDGDALYELMKQEMAVMLKTAEQPLVIPADKKPFVILMVGV 452

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R S   +    G+D+A
Sbjct: 453 NGVGKTTTIGKLAKQFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSA 512

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++AF+ A+A+ VDVLI DTAGRL N   LM  + K+ RV+K++DP APH V+  +DA
Sbjct: 513 SVIFDAFQAAKARNVDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDA 572

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ QV +F+   G TG+ ++K+DGTA+GG +  +     IP+ ++GVGE I+DL 
Sbjct: 573 GTGQNAISQVNLFNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGESIDDLR 632

Query: 300 PFVAKDFSAVIT 311
            F + DF   + 
Sbjct: 633 AFKSDDFIDALF 644


>gi|226946816|ref|YP_002801889.1| signal recognition particle-docking protein FtsY [Azotobacter
           vinelandii DJ]
 gi|226721743|gb|ACO80914.1| signal recognition particle-docking protein FtsY [Azotobacter
           vinelandii DJ]
          Length = 451

 Score =  316 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 128/304 (42%), Positives = 191/304 (62%), Gaps = 2/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              +  +L +G A T   L EG+  +    + +DD + EELE  L+ +D+GV     I++
Sbjct: 142 KSGFFARLRQGLAKTGSTLGEGMASLFLGEKAIDDELLEELETRLLLADVGVEATTAIIQ 201

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +   K+++    LY  + E +  +L P+ +P   +   RP+VILVVGVNGVGKTT 
Sbjct: 202 SLTQRVARKELADSEALYRALQEELAALLRPVEQPLVLESEQRPYVILVVGVNGVGKTTT 261

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ ++   G KVMLAAGDTFR+AA++QL+IW +R     +    G+D+A++ ++A +
Sbjct: 262 IGKLAARLQQEGRKVMLAAGDTFRAAAVEQLQIWGERNRIPVIAQHTGADSASVIFDALQ 321

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +DVLI DTAGRLH    LM  + K+ RVL +LD  APH VL VLDA TGQNA+ 
Sbjct: 322 AAKARGMDVLIADTAGRLHTKDNLMEELKKVRRVLGKLDEAAPHEVLLVLDAGTGQNAIN 381

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEG++DL  F A++F 
Sbjct: 382 QTKQFNQAVEITGLALTKLDGTAKGGVIFALARQFGLPIRYIGVGEGVDDLRDFAAEEFV 441

Query: 308 AVIT 311
             + 
Sbjct: 442 RALF 445


>gi|332142894|ref|YP_004428632.1| signal recognition particle GTPase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|332143061|ref|YP_004428799.1| signal recognition particle GTPase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552916|gb|AEA99634.1| signal recognition particle GTPase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553083|gb|AEA99801.1| signal recognition particle GTPase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 541

 Score =  316 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 126/314 (40%), Positives = 193/314 (61%), Gaps = 6/314 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q    E  S   +L +  + T   L  GI  +   + +DD + E+LE  L+ +D+G+   
Sbjct: 220 QDKPKEKKSLFARLRESLSRTKENLGSGIVSLFKGKAIDDELYEDLETQLLVADVGMDTT 279

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNW-----DFSHRPHVILVV 117
           QKI+  L      KD+     L   + + +  ML  +++P +      D S  P VIL+V
Sbjct: 280 QKIITHLTDSASRKDLKDAEALLEILKQRMSGMLSEVNQPLSDVMQAHDASEGPFVILMV 339

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D
Sbjct: 340 GVNGVGKTTTIGKLAKQFQQQGKKVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGAD 399

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           +A++ Y+A + A+++  D+LI DTAGRL N + LM  + K++RV+K+++P+APH V+  L
Sbjct: 400 SASVLYDALEAAKSRGTDILIADTAGRLQNKNNLMEELKKVVRVMKKINPNAPHEVMLTL 459

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    KIP+ ++GVGE I+D
Sbjct: 460 DAGTGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFSIADKFKIPIRYIGVGESIDD 519

Query: 298 LEPFVAKDFSAVIT 311
           L  F  ++F   + 
Sbjct: 520 LRQFDGQEFIDALF 533


>gi|283850392|ref|ZP_06367681.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp.
           FW1012B]
 gi|283574418|gb|EFC22389.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp.
           FW1012B]
          Length = 626

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 191/313 (61%), Gaps = 3/313 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59
           +  +    E      KL++G A T  ++ + I  ++ S   +D+   EELE++L+ +D+G
Sbjct: 314 LDLEDEEDERNRLFLKLSEGLAKTKEQIVKRIDGLLGSHAVIDEAFWEELEEILLMADVG 373

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              A K++  L  +   +  +   V  ++  L H++      P      + P VI+++GV
Sbjct: 374 FEPAAKLLGSLRAEVRRRGTTDPAVFKEI--LRHELSEIFRTPKTIRAFNPPEVIMMIGV 431

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT I KL+ +    G KV++AAGDTFR+AAI+Q++IWA R  A F     GSD A
Sbjct: 432 NGVGKTTTIAKLAHRDIMQGKKVLIAAGDTFRAAAIEQMQIWAKRVGAGFYTKGEGSDPA 491

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A+EA  +A A+ VDVL +DTAGRLH  + LM  + K+ RVL +  P APH  + VLDA
Sbjct: 492 AVAFEAMDRALAEGVDVLYLDTAGRLHTKANLMEELKKIRRVLGKKHPGAPHRSVLVLDA 551

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q  +F+  AG   +I+TK+DGTA+GG ++ I ++  IP+ ++G+GE + DL 
Sbjct: 552 TTGQNALSQTRLFNEAAGVDEIILTKLDGTAKGGVVVGIALSFGIPITYVGLGEKMEDLR 611

Query: 300 PFVAKDFSAVITG 312
           PF  +DF+  + G
Sbjct: 612 PFDGQDFAQALLG 624


>gi|319899511|ref|YP_004159608.1| cell division protein [Bartonella clarridgeiae 73]
 gi|319403479|emb|CBI77059.1| cell division protein [Bartonella clarridgeiae 73]
          Length = 387

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 154/312 (49%), Positives = 220/312 (70%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S   V  +  +W  +L KG + +S +L + I  + + ++LD+   +ELED+LI++D G+
Sbjct: 73  LSTSTVEQKKAAWFERLKKGLSLSSQQLSDSIGSLFAKKKLDENTLQELEDILIQADFGI 132

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               +I++ L T RY K++S + +   V+  I K+L P++ P   D +H+PHVIL+VGVN
Sbjct: 133 ETTTRIIDILATGRYEKNLSPKDIYTIVTNEIKKVLEPIAFPLEIDLNHKPHVILLVGVN 192

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++  GLK+ML AGDTFR+AAI+QL IW +RT A  + S++ +D A+
Sbjct: 193 GTGKTTTIGKLAAKLTAGGLKIMLVAGDTFRAAAIEQLHIWGERTKAPVISSKLAADPAS 252

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           L ++A+K+A+ +  DVLIIDTAGRL N   LM  + K+IRVL + +P APH+VLQ LDAT
Sbjct: 253 LVFDAYKKAKKEGSDVLIIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDAT 312

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV +F  +AG  GL+MTK+DGTARGG L+ I   HK+PV+F+G+GE + DLEP
Sbjct: 313 TGQNALNQVNIFRDIAGVNGLVMTKLDGTARGGILVAIASKHKLPVHFIGIGENVEDLEP 372

Query: 301 FVAKDFSAVITG 312
           F A DF+  I G
Sbjct: 373 FSASDFAEAIIG 384


>gi|290473621|ref|YP_003466493.1| cell division protein: membrane binding (N-terminal); GTPase domain
           (C-terminal) [Xenorhabdus bovienii SS-2004]
 gi|289172926|emb|CBJ79697.1| cell division protein: membrane binding (N-terminal); GTPase domain
           (C-terminal) [Xenorhabdus bovienii SS-2004]
          Length = 465

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 127/316 (40%), Positives = 192/316 (60%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +  ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV
Sbjct: 151 LPKEQDRPSKEGFFARLKRSLVKTRQNLGSGFLGLFSGKKIDDDLFEELEEQLLVADVGV 210

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K++     LY  + E +  +L  + KP + +    P+VIL+VGV
Sbjct: 211 ETTRKIINNLTAHASRKELKDAEALYTKLKEEMSDILAKVDKPLDIE-GKSPYVILMVGV 269

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     +    G+D A
Sbjct: 270 NGVGKTTTIGKLARQYQSQGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADPA 329

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+AK VD+LI DTAGRL N S LM  + K++RV+++LD   PH ++  LDA
Sbjct: 330 SVIFDAIQSAKAKGVDILIADTAGRLQNKSHLMEELKKIVRVMRKLDEETPHEIMLTLDA 389

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL 
Sbjct: 390 CTGQNAVSQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFDIPIRYIGVGEGIEDLR 449

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 450 PFKADDFIEALFARED 465


>gi|304320389|ref|YP_003854032.1| FtsY, signal recognition particle-docking protein [Parvularcula
           bermudensis HTCC2503]
 gi|303299291|gb|ADM08890.1| FtsY, signal recognition particle-docking protein [Parvularcula
           bermudensis HTCC2503]
          Length = 459

 Score =  314 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 141/300 (47%), Positives = 193/300 (64%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
              +   +   +  +L  G A TS KL  GI  I + +RLDD   EELEDLLI +DIGV 
Sbjct: 146 PTDQPTDKPKGFFGRLRSGLAKTSAKLSGGIGTIFTKKRLDDDTLEELEDLLIMADIGVP 205

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              +I+ +L   ++ ++VS + +   +S  I   L PL      D +H PHVIL+ GVNG
Sbjct: 206 TTTRIITQLAKDKFDQEVSGEDIRAILSREIETTLAPLEAQLAPDGTHGPHVILMTGVNG 265

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+++ +  G  V+LAA DTFR+AAI+QL +W +R     +  E G+D AAL
Sbjct: 266 AGKTTTIGKLAQQFTAEGKSVLLAACDTFRAAAIEQLTVWGERVGVPVISREQGADPAAL 325

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A  +AQA+ +D+++IDTAGRL N   LM  +GK++RV+K+LD  APH  + VLDAT 
Sbjct: 326 AYDAVAKAQAEGIDIVLIDTAGRLQNRRELMDELGKIVRVVKKLDDSAPHDAVLVLDATV 385

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q E F   A  TGLIMTK+DGTARGG L+ +     +P++ +GVGE + DL+PF
Sbjct: 386 GQNALSQTEAFLETAKITGLIMTKLDGTARGGVLVALGDKFGLPIHAIGVGETVEDLQPF 445


>gi|27375584|ref|NP_767113.1| cell division protein [Bradyrhizobium japonicum USDA 110]
 gi|27348721|dbj|BAC45738.1| bll0473 [Bradyrhizobium japonicum USDA 110]
          Length = 315

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 157/313 (50%), Positives = 219/313 (69%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M++       LSW R+L+ G   TS  L   + D+++ R+LD  + +++ED+L+R+D+G 
Sbjct: 1   MNDTTSDPPKLSWWRRLSNGLKRTSSSLGTAVADLVTKRKLDRAMLDDIEDVLLRADLGT 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +VA +I + + T RY K +S   V   V+  + K+L P++KP   D + +P VILVVGVN
Sbjct: 61  SVAVRIADAVGTGRYDKAISADEVKDVVATEVEKVLAPVAKPLEIDAARKPFVILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKLS+K +  G KVMLAAGDTFR+AAI+QLK+W +RT    +    GSD+A+
Sbjct: 121 GSGKTTTIGKLSQKFASEGRKVMLAAGDTFRAAAIEQLKVWGERTKTPVIAGTQGSDSAS 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA+ A   A+ +K DVL+IDTAGRL N + LM  + K++RV++++D  APH+VL VLDAT
Sbjct: 181 LAFNALTAAKEQKTDVLLIDTAGRLQNKAELMNELEKVVRVIRKVDDTAPHAVLLVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL QVE FH  AG TGL+MTK+DGTARGG L+ +    K+PV+F+GVGEG++DL P
Sbjct: 241 VGQNALSQVEAFHRTAGVTGLVMTKLDGTARGGILVALAEKFKLPVHFIGVGEGVDDLAP 300

Query: 301 FVAKDFSAVITGC 313
           F A+DF+  I G 
Sbjct: 301 FTARDFARAIAGI 313


>gi|329118182|ref|ZP_08246892.1| cell division protein FtsY [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465603|gb|EGF11878.1| cell division protein FtsY [Neisseria bacilliformis ATCC BAA-1200]
          Length = 470

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 121/301 (40%), Positives = 183/301 (60%), Gaps = 2/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            W  +L +G   +  K+ + +  +    ++DD + EELE +L+ SD+G+   + I+E++ 
Sbjct: 169 GWAARLKQGLGKSRDKMAKSLAGVFGGGKIDDELYEELETVLLTSDMGIEATEHIMEDVR 228

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   K +S    L   + E ++++L PL +P     + +P VI++ G+NG GKTT IGK
Sbjct: 229 RRVSLKGLSDSGQLRRALKESLYELLAPLEQPLEIPDNGQPFVIMMAGINGAGKTTSIGK 288

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K     G  V+LAAGDTFR+AA +QL+ W  R     V S+   D+AA+ Y+A + A+
Sbjct: 289 LAKYFQQQGKTVILAAGDTFRAAAREQLQEWGARNGVTVV-SQAKGDSAAVCYDAVESAK 347

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A++ D+++ DTAGRL     LM  I K+ RVL++    APH ++ VLDA  GQNA+ QV 
Sbjct: 348 ARRTDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMSDAPHEIIVVLDANIGQNAVNQVI 407

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  +     IPV ++GVGEGI+DL PF A+ F   +
Sbjct: 408 AFDDALGVTGLIVTKLDGTAKGGVLAALAAARPIPVRYIGVGEGIDDLRPFNARAFVDAL 467

Query: 311 T 311
            
Sbjct: 468 I 468


>gi|225025030|ref|ZP_03714222.1| hypothetical protein EIKCOROL_01919 [Eikenella corrodens ATCC
           23834]
 gi|224942260|gb|EEG23469.1| hypothetical protein EIKCOROL_01919 [Eikenella corrodens ATCC
           23834]
          Length = 480

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 190/311 (61%), Gaps = 4/311 (1%)

Query: 4   QKVASES--LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + V+ +   L W  +L +G + +  ++ + +  +    ++D+ + EELE +L+ SD+G+ 
Sbjct: 171 EPVSEQPTLLGWAARLKQGLSKSRQQMAKSLAGVFGGGKIDEDLYEELETVLLTSDMGIE 230

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             + ++EE+  +   + +     L   + E I++++ PL +P       RP VI++ G+N
Sbjct: 231 ATEHLMEEVRQRVSLRGLKDGEELRGALKEAIYELIKPLEQPLALPADKRPFVIMLAGIN 290

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+K     G  V+LAAGDTFR+AA +QL  W +R     + S+   D+AA
Sbjct: 291 GAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLAEWGERNGVTVI-SQASGDSAA 349

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +D+++ DTAGRL   + LM  I K+ RVL++  P APH ++ VLDA 
Sbjct: 350 VCFDAVEAAKARGIDIVLADTAGRLPTQTHLMEEIKKVKRVLQKSMPDAPHEIVVVLDAN 409

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNA+ QV  F    G TGLI+TK+DGTA+GG L  +     +PV F+GVGEGI+DL P
Sbjct: 410 IGQNAVNQVIAFDDALGLTGLIVTKLDGTAKGGVLAALASRRPVPVRFIGVGEGIDDLRP 469

Query: 301 FVAKDFSAVIT 311
           F A++F   + 
Sbjct: 470 FNAREFVDALL 480


>gi|320154974|ref|YP_004187353.1| signal recognition particle receptor protein FtsY subunit alpha
           [Vibrio vulnificus MO6-24/O]
 gi|319930286|gb|ADV85150.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Vibrio vulnificus MO6-24/O]
          Length = 395

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 199/309 (64%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 83  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 142

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+E L  K   +D+     LY  + E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 143 LKIIENLTEKASRRDLKDGEALYGLLKEEMAEILSKVEQPLQVDSSKTPYVILMVGVNGV 202

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+  + G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 203 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 262

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 263 YDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 322

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 323 QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFE 382

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 383 TQEFIDALF 391


>gi|78043121|ref|YP_360274.1| signal recognition particle-docking protein FtsY [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995236|gb|ABB14135.1| signal recognition particle-docking protein FtsY [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 303

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 132/302 (43%), Positives = 190/302 (62%), Gaps = 2/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  +L +    T   +   I D+     +D+ + E+LE++LI  D+GV  + ++VE+L
Sbjct: 1   MGFFDRLKESLIKTKQNIVAKIEDVFKKSTVDEELFEKLEEILIEGDVGVKPSLELVEKL 60

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                 + ++    L  V  E I K+L         +    P VILVVGVNGVGKTT IG
Sbjct: 61  RKTARERRITDSEQLKQVLKEEILKILEAGDNKLK-NVPRTPLVILVVGVNGVGKTTTIG 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+      G +V+LAAGDTFR+AAI+QL+IW ++     +  + GSD AA+A++A K A
Sbjct: 120 KLAYYFKQQGKQVLLAAGDTFRAAAIEQLEIWGNKVGCPVIKQKEGSDPAAVAFDAVKAA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+K+DVLIIDTAGRLH  + LM  + K+ RV++R  P AP  VL VLDATTGQNAL QV
Sbjct: 180 IARKIDVLIIDTAGRLHTKTNLMEELRKVKRVIERELPGAPDEVLLVLDATTGQNALSQV 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TGL++TK+DGTA+GG +I I  +++IP+ F+GVGE ++DL PF  ++F   
Sbjct: 240 EYFNKALDLTGLVLTKLDGTAKGGVIIGIKSSYQIPIKFIGVGEKMDDLRPFDPQEFVEA 299

Query: 310 IT 311
           + 
Sbjct: 300 LF 301


>gi|74316394|ref|YP_314134.1| signal recognition particle-docking protein FtsY [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055889|gb|AAZ96329.1| Cell division transporter substrate-binding protein FtsY
           [Thiobacillus denitrificans ATCC 25259]
          Length = 376

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 123/304 (40%), Positives = 190/304 (62%), Gaps = 4/304 (1%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +SW ++L +G A T  +L   +  +    R++D  + EELE +LI +DIGV   Q +++
Sbjct: 73  RVSWAQRLKQGLAKTRDRLGGQLAGLFGVGRKIDAELFEELETILITADIGVDATQALLD 132

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K   ++++    L   + + +  ML+PL  P +   +H+P ++++ GVNG GKTT 
Sbjct: 133 TLQKKVRRENLTEASELQTALKQALIDMLLPLQAPLDVK-THKPFILMLAGVNGAGKTTT 191

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K     GL V+LAAGDTFR+AA +QL++W +R     V  E G  A A+ ++A +
Sbjct: 192 IGKLAKLYQAQGLSVLLAAGDTFRAAAREQLQVWGERNGVTVVSQEKGDSA-AVIFDAIQ 250

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +DV++ DTAGRL     LM  I K+ RV+++  P APH +L VLDA TGQNA+ 
Sbjct: 251 AARARNIDVVLADTAGRLPTQLHLMEEIRKVKRVIEKAIPGAPHEILLVLDANTGQNAVA 310

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QV+ F    G +GL++TK+DGTA+GG +  +     +PV ++GVGE ++DL PF A+DF 
Sbjct: 311 QVKAFDDALGVSGLVLTKLDGTAKGGAIAAVAQARPLPVRYIGVGETVDDLRPFDARDFV 370

Query: 308 AVIT 311
             + 
Sbjct: 371 EAVF 374


>gi|326423803|ref|NP_760099.2| signal recognition particle-docking protein FtsY [Vibrio vulnificus
           CMCP6]
 gi|319999171|gb|AAO09626.2| signal recognition particle-docking protein FtsY [Vibrio vulnificus
           CMCP6]
          Length = 395

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 199/309 (64%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 83  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 142

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+E L  K   +D+     LY  + E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 143 LKIIENLTEKASRRDLKDGEALYGLLKEEMAEILSKVEQPLQVDSSKTPYVILMVGVNGV 202

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+  + G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 203 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 262

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 263 YDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 322

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 323 QNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFNIPIRYIGVGEGIEDLRPFE 382

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 383 TQEFIDALF 391


>gi|226199570|ref|ZP_03795127.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei Pakistan 9]
 gi|225928451|gb|EEH24481.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei Pakistan 9]
          Length = 476

 Score =  314 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 128/304 (42%), Positives = 185/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  
Sbjct: 179 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGA 234

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D + EL+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 235 LREKVRAGRLTDPQQVKDALRELLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 293

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 294 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 352

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 353 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 412

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 413 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 472

Query: 309 VITG 312
            + G
Sbjct: 473 ALLG 476


>gi|308051465|ref|YP_003915031.1| signal recognition particle-docking protein FtsY [Ferrimonas
           balearica DSM 9799]
 gi|307633655|gb|ADN77957.1| signal recognition particle-docking protein FtsY [Ferrimonas
           balearica DSM 9799]
          Length = 590

 Score =  314 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 124/303 (40%), Positives = 190/303 (62%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
              +  +L  G   TS  +  G   +   +++DD + EELE  L+ +D+GV    +I++ 
Sbjct: 282 KQGFFARLKAGLRRTSENIGGGFMALFKGKKIDDELFEELETQLLLADVGVETTSRIIDS 341

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K    ++     L+  +   +   L  + +P   +  + P VIL+VGVNGVGKTT I
Sbjct: 342 LTDKASFGELKDSDALFAHLKSELKDTLSKVDQPLVIENPNGPFVILMVGVNGVGKTTTI 401

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W DR +   +    G+D+A++ ++A + 
Sbjct: 402 GKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQHTGADSASVIFDALQA 461

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ VDVLI DTAGRL N + LM  + K++RV+K+LD +APH V+  LDA+TGQNA+ Q
Sbjct: 462 AKARNVDVLIADTAGRLQNKAHLMDELKKIVRVMKKLDENAPHEVMLTLDASTGQNAISQ 521

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F+   G TGL +TK+DGTA+GG +  +     IPV ++GVGEGI+DL PF ++ F  
Sbjct: 522 AQIFNEAVGLTGLTLTKLDGTAKGGVIFALADKFGIPVRYIGVGEGIDDLRPFESQAFID 581

Query: 309 VIT 311
            + 
Sbjct: 582 ALF 584


>gi|332968151|gb|EGK07234.1| cell division protein FtsY [Kingella kingae ATCC 23330]
          Length = 545

 Score =  314 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 185/303 (61%), Gaps = 2/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           SL W  +L +G + +  ++ + +  +    ++D+ + EELE +LI SD+G+   ++++ E
Sbjct: 239 SLGWTARLARGLSKSRNQMAKSLAGVFGGGKIDEDLYEELETVLITSDMGIEATEQLMNE 298

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  +   K +     L   + + I+ +L PL +P     + +P VI++ G+NG GKTT I
Sbjct: 299 VRNRVSLKGLKDGAELRSALKDAIYDLLKPLDQPLVLPDNGQPFVIMMAGINGAGKTTSI 358

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K     G  VMLAAGDTFR+AA +QL+ W  R +   +  E G  A A+ ++A + 
Sbjct: 359 GKLAKYFQSQGKSVMLAAGDTFRAAAREQLQEWGARNNVTVISQEKGDSA-AVCFDAVEA 417

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+K+DV++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ Q
Sbjct: 418 AKARKIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIMVVLDANIGQNAVNQ 477

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V  F    G TGLI+TK+DGTA+GG L  +  +  IPV ++GVGE I+DL PF AK F  
Sbjct: 478 VVAFDDALGVTGLIVTKLDGTAKGGVLAALASSRAIPVRYIGVGESIDDLRPFNAKAFVD 537

Query: 309 VIT 311
            + 
Sbjct: 538 ALL 540


>gi|126451651|ref|YP_001064860.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1106a]
 gi|126225293|gb|ABN88833.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1106a]
          Length = 476

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ 
Sbjct: 179 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 234

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 235 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 293

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 294 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 352

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 353 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 412

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 413 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 472

Query: 309 VITG 312
            + G
Sbjct: 473 ALLG 476


>gi|76808739|ref|YP_332160.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1710b]
 gi|76578192|gb|ABA47667.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1710b]
          Length = 476

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ 
Sbjct: 179 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 234

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 235 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 293

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 294 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 352

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 353 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 412

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 413 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 472

Query: 309 VITG 312
            + G
Sbjct: 473 ALLG 476


>gi|297569034|ref|YP_003690378.1| signal recognition particle-docking protein FtsY [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924949|gb|ADH85759.1| signal recognition particle-docking protein FtsY [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 397

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 112/303 (36%), Positives = 182/303 (60%), Gaps = 3/303 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  +L +G + T   L   + ++   ++ +D  + +ELE++LI +D+G A   +++E  
Sbjct: 70  GFFNRLRQGLSRTRENLVSRMDELFLGKKVIDAELFDELEEILITADLGTATTHELLERA 129

Query: 71  LTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVI 128
             +     +S  + L   + +L+   L+   +P      +  P VI+V+GVNGVGKTT I
Sbjct: 130 REQVKRDQLSDPKALEGILQQLLQDYLVQADRPAELVMPASGPFVIMVLGVNGVGKTTTI 189

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ K   AG +V+L A DTFR+AAI+QL+ W  R  A+ +  + G+D +++ Y+AF  
Sbjct: 190 GKLAYKFKQAGQQVLLVAADTFRAAAIEQLQAWGQRVDAEVIAQQQGADPSSVIYDAFDY 249

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ +  DV+I+DTAGRLH    LM  + K+ RV+ +  P APH V+ V+DATTGQN + Q
Sbjct: 250 ARPRNFDVIIVDTAGRLHTKVNLMEELRKIKRVMNQKIPGAPHEVMLVIDATTGQNGISQ 309

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +FH     +G+ +TK+DGT+RGG ++ I    KIP+ F+G+GE + DL  F  ++F  
Sbjct: 310 ARLFHEAVEVSGIALTKLDGTSRGGIVVNICREFKIPIRFVGIGEQMEDLRDFEPREFVK 369

Query: 309 VIT 311
            + 
Sbjct: 370 ALF 372


>gi|262273591|ref|ZP_06051405.1| signal recognition particle receptor protein FtsY [Grimontia
           hollisae CIP 101886]
 gi|262222569|gb|EEY73880.1| signal recognition particle receptor protein FtsY [Grimontia
           hollisae CIP 101886]
          Length = 529

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 199/313 (63%), Gaps = 1/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++   +   +  +L +G   T + L  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 217 EQEKPKKEGFFARLKRGLQKTKVNLGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTT 276

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K   K++     LY  + + +  +L  + KP   D    P VIL+VGVNGV
Sbjct: 277 TKIINSLTEKASRKELKDGEALYGILKQEMADILSKVEKPLEIDRKDGPFVILMVGVNGV 336

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 337 GKTTTIGKLAKQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 396

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K+LD +APH ++  +DA TG
Sbjct: 397 YDAIEAAKARNVDVVIADTAGRLQNKANLMEELKKIVRVMKKLDENAPHEIMLTIDAGTG 456

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q  +F+ +A  +G+ +TK+DGTA+GG +  +     IP+ ++GVGEGI+DL PFV
Sbjct: 457 QNAISQARLFNDIAPLSGITLTKLDGTAKGGVIFAVADQFNIPIRYIGVGEGIDDLRPFV 516

Query: 303 AKDFSAVITGCLD 315
           A++F   +    D
Sbjct: 517 AEEFIEALFSRED 529


>gi|260899650|ref|ZP_05908045.1| cell division protein FtsY [Vibrio parahaemolyticus AQ4037]
 gi|308106736|gb|EFO44276.1| cell division protein FtsY [Vibrio parahaemolyticus AQ4037]
          Length = 411

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 197/309 (63%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 99  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 158

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY  + E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 159 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 218

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 219 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 278

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 279 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 338

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 339 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 398

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 399 TQEFIDALF 407


>gi|260361295|ref|ZP_05774400.1| cell division protein FtsY [Vibrio parahaemolyticus K5030]
 gi|308111830|gb|EFO49370.1| cell division protein FtsY [Vibrio parahaemolyticus K5030]
          Length = 407

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 197/309 (63%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 95  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 154

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY  + E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 155 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 214

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 215 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 274

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 275 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 334

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 335 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 394

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 395 TQEFIDALF 403


>gi|153840071|ref|ZP_01992738.1| cell division protein FtsY [Vibrio parahaemolyticus AQ3810]
 gi|149746343|gb|EDM57398.1| cell division protein FtsY [Vibrio parahaemolyticus AQ3810]
          Length = 403

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 197/309 (63%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 91  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 150

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY  + E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 151 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 210

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 211 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 270

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 271 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 330

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 331 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 390

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 391 TQEFIDALF 399


>gi|28899730|ref|NP_799335.1| cell division protein FtsY [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879107|ref|ZP_05891462.1| cell division protein FtsY [Vibrio parahaemolyticus AN-5034]
 gi|260897983|ref|ZP_05906479.1| cell division protein FtsY [Vibrio parahaemolyticus Peru-466]
 gi|28807982|dbj|BAC61219.1| cell division protein FtsY [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087163|gb|EFO36858.1| cell division protein FtsY [Vibrio parahaemolyticus Peru-466]
 gi|308089649|gb|EFO39344.1| cell division protein FtsY [Vibrio parahaemolyticus AN-5034]
          Length = 405

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 197/309 (63%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 93  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 152

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY  + E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 153 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGV 212

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 213 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 272

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 273 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 332

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 333 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFE 392

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 393 TQEFIDALF 401


>gi|328472443|gb|EGF43309.1| signal recognition particle-docking protein FtsY [Vibrio
           parahaemolyticus 10329]
          Length = 403

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 198/309 (64%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 91  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 150

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY  + E + ++L  + +P + D S  P+VIL+VGVNGV
Sbjct: 151 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLDIDSSKTPYVILMVGVNGV 210

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 211 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 270

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 271 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 330

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 331 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFE 390

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 391 TQEFIDALF 399


>gi|222150095|ref|YP_002551052.1| cell division particle [Agrobacterium vitis S4]
 gi|221737077|gb|ACM38040.1| cell division particle [Agrobacterium vitis S4]
          Length = 454

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 177/308 (57%), Positives = 233/308 (75%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SW ++L  G   TS +L   I+ + + R+LD+   EELEDLLI++D+GV  A ++   
Sbjct: 147 KQSWFQRLKAGLFRTSSQLTGQISALFTKRKLDEETLEELEDLLIQADLGVETAMRVTGT 206

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L ++RY KDV+ + V   ++  I K+L P++KP   D +H+PHVILVVGVNG GKTT IG
Sbjct: 207 LSSERYGKDVTGEDVTRIMAAEIVKVLKPVAKPLALDLNHKPHVILVVGVNGTGKTTTIG 266

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K+S +GLKVMLAAGDTFR+AAI+QLKIWADRT + F+ +++G+DAA LAY+AF++A
Sbjct: 267 KLAAKLSGSGLKVMLAAGDTFRAAAIEQLKIWADRTGSTFIGTKLGADAAGLAYDAFEKA 326

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLIIDTAGRL N + LM  + K++RVL +LDP APH+VLQ LDATTGQNA+ QV
Sbjct: 327 KAEKSDVLIIDTAGRLQNKTELMDELEKIVRVLSKLDPDAPHTVLQTLDATTGQNAMNQV 386

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VAG  GLIMTK+DGTARGG L+ I   HK+PVYF+GVGEG++DLEPF A+DF+  
Sbjct: 387 EIFRNVAGVNGLIMTKLDGTARGGILVAIAAKHKLPVYFIGVGEGVDDLEPFEAEDFARA 446

Query: 310 ITGCLDYG 317
           I G    G
Sbjct: 447 IAGFGSSG 454


>gi|317494587|ref|ZP_07953000.1| signal recognition particle-docking protein FtsY
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917517|gb|EFV38863.1| signal recognition particle-docking protein FtsY
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 603

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 193/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 292 EQERPTKEGFFARLKRSLLKTKQNLGSGFFGLFRGKKIDDDLFEELEEQLLIADVGVETT 351

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI++ L      K++     LY  + E + ++L  + KP +      P VIL+VGVNGV
Sbjct: 352 SKIIKSLTEHASRKELKDAESLYGKLKEEMGEILSTVDKPLDVS-GRTPFVILMVGVNGV 410

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 411 GKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQHTGADSASVI 470

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 471 FDAIQAAKARNVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTG 530

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL PF 
Sbjct: 531 QNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAVADQFGIPIRYIGVGEGIEDLRPFK 590

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 591 ADDFIEALFARED 603


>gi|85373608|ref|YP_457670.1| signal recognition particle GTPase [Erythrobacter litoralis
           HTCC2594]
 gi|84786691|gb|ABC62873.1| signal recognition particle GTPase [Erythrobacter litoralis
           HTCC2594]
          Length = 304

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 142/303 (46%), Positives = 193/303 (63%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +SW  +L  GF  TS +L E +T  +S+  LDD   EE+ED LI SD+G A A +I E+L
Sbjct: 1   MSWTERLFGGFKKTSDRLSENLTTAVSTATLDDATLEEVEDALIMSDLGPAAASRIREKL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             KR+   +S + +   V++ I ++L P++KP       RP VILV+GVNG GKTT I K
Sbjct: 61  KEKRFGLQISERELKKAVADEIAEILRPVAKPLEITAFPRPQVILVIGVNGSGKTTTIAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  + +   +VMLAAGDTFR+AAI+QL  WADR     V    G D A++ ++  K   
Sbjct: 121 LAHWLVEEDYEVMLAAGDTFRAAAIEQLATWADRVGVPIVKGPQGGDPASIVFDGVKAGT 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D L++DTAGRL N   LM  + K+ +VL RL+P APH V+ VLDAT GQNAL Q++
Sbjct: 181 DRGTDALVVDTAGRLQNKRELMDELAKIRKVLGRLNPEAPHDVILVLDATNGQNALSQID 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG TGLIMTK+DGTARGG L+     + +P++ +GVGE I+DL PF     + VI
Sbjct: 241 VFKEVAGVTGLIMTKLDGTARGGVLVAAAEQYGLPIHAIGVGETIDDLRPFDPDLVAKVI 300

Query: 311 TGC 313
            G 
Sbjct: 301 AGI 303


>gi|298293311|ref|YP_003695250.1| signal recognition particle-docking protein FtsY [Starkeya novella
           DSM 506]
 gi|296929822|gb|ADH90631.1| signal recognition particle-docking protein FtsY [Starkeya novella
           DSM 506]
          Length = 318

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 152/302 (50%), Positives = 210/302 (69%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            + ++LT+G   T+  L  GITD+ + R+LD    EELED+LIR+D+GV  + +I E + 
Sbjct: 15  GFWKRLTQGLTRTASGLSTGITDLFTKRKLDATTLEELEDVLIRADLGVETSARIAEAVG 74

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             RY K +  + V   V+  I  +L P++ P  ++   +P V+L+VGVNG GKTT IGKL
Sbjct: 75  KGRYDKGIDPEEVRNLVAAEIEAVLTPVAHPLAFNTGAKPFVLLMVGVNGSGKTTTIGKL 134

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G KV+LAAGDTFR+AAI+QLK+WADRT A  V    G+DAA +A++  +QA+ 
Sbjct: 135 ASTLRAQGKKVVLAAGDTFRAAAIEQLKVWADRTGAAIVARPPGADAAGVAFDGLQQARE 194

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLIIDTAGRL N + LMA + K++RV+K+ D  APH+V+  LDAT GQNAL+QVE 
Sbjct: 195 VGADVLIIDTAGRLQNRAELMAELEKVVRVIKKQDASAPHAVVLTLDATVGQNALQQVEA 254

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG TGL+MTK+DGTARGG L+ I   + +PV+ +G+GEGI+DL+PF A+DF+  I 
Sbjct: 255 FRRVAGVTGLVMTKLDGTARGGILVAIAAKYGLPVHMIGIGEGIDDLQPFAARDFARAIV 314

Query: 312 GC 313
           G 
Sbjct: 315 GL 316


>gi|262040530|ref|ZP_06013771.1| signal recognition particle-docking protein FtsY [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|329999134|ref|ZP_08303335.1| signal recognition particle-docking protein FtsY [Klebsiella sp. MS
           92-3]
 gi|259042123|gb|EEW43153.1| signal recognition particle-docking protein FtsY [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|328538428|gb|EGF64549.1| signal recognition particle-docking protein FtsY [Klebsiella sp. MS
           92-3]
          Length = 517

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 203 LAQEQEKPTKEGFFARLKRSLLKTKQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 262

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 263 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 321

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 322 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 381

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 382 SVIFDAIQAAKARHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDA 441

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 442 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 501

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 502 PFNAGDFIEALFARED 517


>gi|332531762|ref|ZP_08407647.1| signal recognition particle receptor protein FtsY
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038738|gb|EGI75180.1| signal recognition particle receptor protein FtsY
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 432

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 123/301 (40%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T + +  G   I S +++DD + E+LE  L+ +D+GV    K+++ L 
Sbjct: 125 GFFSRLKKGLLKTRVNIGSGFASIFSGKKIDDELFEDLETQLLTADLGVDTTMKLIDRLT 184

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K +     LY++  + +  ML    +P       +P VIL+VGVNGVGKTT IGK
Sbjct: 185 DAANRKQLKDGDALYELMKQEMAAMLKTAEQPLVISEDKKPFVILMVGVNGVGKTTTIGK 244

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++K+  + G  VMLAAGDTFR+AA++QL++W +R S   +    G+D+A++ ++AF+ A+
Sbjct: 245 MAKQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVIAQHTGADSASVVFDAFQAAK 304

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DVLI DTAGRL N   LM  + K+ RV+K++DP APH V+  +DA TGQNA+ QV 
Sbjct: 305 ARNIDVLIADTAGRLQNKDNLMQELEKIARVMKKIDPDAPHEVMLTIDAGTGQNAISQVN 364

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ ++K+DGTA+GG +  +     IP+ ++GVGEGI+DL  F + DF   +
Sbjct: 365 LFNQCVGLTGITLSKLDGTAKGGVIFAVADKFNIPIRYIGVGEGIDDLRAFKSDDFIDAL 424

Query: 311 T 311
            
Sbjct: 425 F 425


>gi|253997119|ref|YP_003049183.1| signal recognition particle-docking protein FtsY [Methylotenera
           mobilis JLW8]
 gi|253983798|gb|ACT48656.1| signal recognition particle-docking protein FtsY [Methylotenera
           mobilis JLW8]
          Length = 336

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 119/302 (39%), Positives = 184/302 (60%), Gaps = 3/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LSW  +L +G A T  +L   +  I    ++D  V EELE +L+ SD+G+   Q +++++
Sbjct: 35  LSWTARLKQGLAKTRNQLGNQLASIFGGGKIDAEVYEELETILLTSDVGINATQHLLDDI 94

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   + +     L   + + +  +L PL +P      H+P +I++ GVNG GKTT IG
Sbjct: 95  KGRVKRQSLDDTVQLKAALKDALSDLLSPLEQPLATS-KHQPFIIMLAGVNGAGKTTTIG 153

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K+    G  V++AAGDTFR+AA +QL++W +R +   V  +   D AA+ ++A   A
Sbjct: 154 KLAKQFQSEGKSVLIAAGDTFRAAAREQLQVWGERNNVHVVA-QTSGDPAAVMFDAINSA 212

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +AK +D+++ DTAGRL     LM  I K+ RV+ +  P APH VL VLDA TGQNA+ QV
Sbjct: 213 RAKNIDIVLADTAGRLPTQMHLMDEIAKVKRVMDKALPGAPHEVLLVLDANTGQNAVSQV 272

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F    G TGL+++K+DGTA+GG +  I     IP+ ++G+GE I+DL PF A +F   
Sbjct: 273 KIFDDALGVTGLVLSKLDGTAKGGVIAAIAQARPIPIRYIGIGEAIDDLRPFNANEFIDA 332

Query: 310 IT 311
           + 
Sbjct: 333 ML 334


>gi|291619278|ref|YP_003522020.1| FtsY [Pantoea ananatis LMG 20103]
 gi|291154308|gb|ADD78892.1| FtsY [Pantoea ananatis LMG 20103]
          Length = 637

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 323 VTQEQDRPTKEGFFARLKRSLVKTRQNLGSGFIGLFRGKKIDDELFEELEEQLLIADVGV 382

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              ++I+  L      K +     LY + +  +  +L  + +P N +    P VIL+VGV
Sbjct: 383 ETTRRIITSLTQHADRKQLRDAEALYGLLKTEMADILAKVEEPLNVE-GKTPFVILMVGV 441

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A
Sbjct: 442 NGVGKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNISVVAQHTGADSA 501

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+++ VDVLI DTAGRL N S LM  + K+ RV+K+LD  APH V+  +DA
Sbjct: 502 SVIFDAIQAAKSRGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDEQAPHEVMLTIDA 561

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL 
Sbjct: 562 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLR 621

Query: 300 PFVAKDFSAVITGCLD 315
           PF A+DF   +    D
Sbjct: 622 PFKAEDFIEALFARED 637


>gi|301062995|ref|ZP_07203560.1| signal recognition particle-docking protein FtsY [delta
           proteobacterium NaphS2]
 gi|300442876|gb|EFK07076.1| signal recognition particle-docking protein FtsY [delta
           proteobacterium NaphS2]
          Length = 353

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 184/312 (58%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60
              KV +      ++L  G   T       I ++ + ++ + + + +ELE++L  SDIGV
Sbjct: 40  KTNKVDNNEEGVFKRLRHGLTKTRSSFTGRIDNLFAGKKEITESLMDELEEILFTSDIGV 99

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           A  Q++++        K +   + L   + + I  +L   S       +  P VI+V GV
Sbjct: 100 ATTQRLLDAARENVTRKALRDPQKLKAILRDHIFSLLNQDSVEHTPSNAEGPLVIMVAGV 159

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGK++ +    G  VML A DTFR+AA++QL IW +R  A  V  + G+D +
Sbjct: 160 NGVGKTTSIGKIANRFRREGKTVMLVAADTFRAAAVEQLTIWGERVGATVVKQDTGADPS 219

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A++A   A ++K+DV+++DTAGRLH  + LMA + K+ RV+ R  P APH V  VLDA
Sbjct: 220 AVAFDAMTAAISRKIDVVLVDTAGRLHTQTNLMAELRKVNRVIGRKLPGAPHEVWLVLDA 279

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q E F    G TG+I+TK+DGTA+GG +I I    +IP+ F+G+GE ++DL 
Sbjct: 280 TTGQNAISQAEAFQKALGLTGIILTKLDGTAKGGVVIGISSEFQIPIRFIGIGEQVDDLR 339

Query: 300 PFVAKDFSAVIT 311
           PF   +F   I 
Sbjct: 340 PFDPGEFVRAIF 351


>gi|298369773|ref|ZP_06981090.1| signal recognition particle-docking protein FtsY [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282330|gb|EFI23818.1| signal recognition particle-docking protein FtsY [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 410

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 117/301 (38%), Positives = 186/301 (61%), Gaps = 2/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  +L +G A +  ++ + +  +    ++D+ + EELE +LI SD+G+   + +++++ 
Sbjct: 110 SWAARLRQGLAKSRNQMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDVR 169

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IGK
Sbjct: 170 NRVSLKGLKDGNELRGALKEAVYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGK 229

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A + A+
Sbjct: 230 LAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDAVQAAK 288

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV+
Sbjct: 289 ARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVK 348

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F   +
Sbjct: 349 AFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFNARAFVDAL 408

Query: 311 T 311
            
Sbjct: 409 L 409


>gi|300721685|ref|YP_003710961.1| cell division protein [Xenorhabdus nematophila ATCC 19061]
 gi|297628178|emb|CBJ88733.1| cell division protein: membrane binding (N-terminal); GTPase domain
           (C-terminal) [Xenorhabdus nematophila ATCC 19061]
          Length = 465

 Score =  311 bits (798), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 131/316 (41%), Positives = 194/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 151 LSKEQERPSKEGFFTRLKRSLVKTRQNLGSGFLSLFRGKKIDDELFEELEEQLLIADVGV 210

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               KI+  L      K++     LY  + E +  +L+ + KP   +    P+VIL+VGV
Sbjct: 211 ETTSKIITSLTAHASRKELKDAEALYSKLKEEMSDILVKVDKPLEIE-GKSPYVILMVGV 269

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D A
Sbjct: 270 NGVGKTTTIGKLARQYQSQGKSVMLAAGDTFRAAAVEQLQVWGDRNKIPVVAQHTGADPA 329

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+AK VD+LI DTAGRL N S LM  + K++RV+K+LD  APH ++  LDA
Sbjct: 330 SVIFDAIQSAKAKGVDILIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEIMLTLDA 389

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL 
Sbjct: 390 STGQNAVSQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLR 449

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 450 PFKADDFIEALFARED 465


>gi|134279674|ref|ZP_01766386.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 305]
 gi|134248874|gb|EBA48956.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 305]
          Length = 476

 Score =  311 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 184/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  
Sbjct: 179 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGA 234

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 235 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 293

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 294 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 352

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 353 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 412

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 413 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 472

Query: 309 VITG 312
            + G
Sbjct: 473 ALLG 476


>gi|238784416|ref|ZP_04628426.1| Cell division protein ftsY [Yersinia bercovieri ATCC 43970]
 gi|238714708|gb|EEQ06710.1| Cell division protein ftsY [Yersinia bercovieri ATCC 43970]
          Length = 519

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 127/315 (40%), Positives = 194/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 206 AQEQERPTKEGFFARLKRSLLKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 265

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +    + P VIL+VGVN
Sbjct: 266 TTRKIITSLTEHASRKQLKDAEALYGKLKEEMSEILSTVDKPLDVSGKN-PFVILMVGVN 324

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 325 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 384

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 385 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 444

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL P
Sbjct: 445 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRP 504

Query: 301 FVAKDFSAVITGCLD 315
           F A DF   +    D
Sbjct: 505 FKADDFIEALFARED 519


>gi|156972628|ref|YP_001443535.1| signal recognition particle GTPase [Vibrio harveyi ATCC BAA-1116]
 gi|156524222|gb|ABU69308.1| hypothetical protein VIBHAR_00280 [Vibrio harveyi ATCC BAA-1116]
          Length = 408

 Score =  311 bits (797), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 199/309 (64%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 96  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMETT 155

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY  + E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 156 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILAKVEQPLEIDSSKTPYVILMVGVNGV 215

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+  + G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 216 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 275

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 276 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 335

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF 
Sbjct: 336 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFE 395

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 396 TQEFIDALF 404


>gi|332763553|gb|EGJ93792.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           2930-71]
 gi|332997161|gb|EGK16777.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           K-218]
          Length = 516

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 202 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 261

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 262 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGV 320

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 321 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 380

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 381 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 440

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 441 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 500

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 501 PFKADDFIEALFARED 516


>gi|268590802|ref|ZP_06125023.1| cell division protein [Providencia rettgeri DSM 1131]
 gi|291313582|gb|EFE54035.1| cell division protein [Providencia rettgeri DSM 1131]
          Length = 627

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 131/311 (42%), Positives = 195/311 (62%), Gaps = 2/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             ++   +   +  +L KG   T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 314 PTEQEKPKKEGFFARLKKGLLKTRQNLGSGFFGLFSGKKIDDDLFEELEEQLLIADVGVD 373

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI++ L      K++     LY  + E +  +L  + KP   +   +P+VIL+VGVN
Sbjct: 374 TTRKIIDNLTAHASRKELKDAEALYGKLREEMSDILAKVDKPLVIE-DKKPYVILMVGVN 432

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D A+
Sbjct: 433 GVGKTTTIGKLARQYQSEGKSVMLAAGDTFRAAAVEQLQVWGERNKIPVVAQHTGADPAS 492

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + AQAK VDVLI DTAGRL N S LM  + K++RV+K+LD +APH ++  LDA+
Sbjct: 493 VIFDAIQSAQAKGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEIMLTLDAS 552

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F    G TG+ +TK+DGTA+GG +  I     IP+ ++G+GEGI DL P
Sbjct: 553 TGQNAVSQAKLFDDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRP 612

Query: 301 FVAKDFSAVIT 311
           F A DF   + 
Sbjct: 613 FKADDFIEALF 623


>gi|238896927|ref|YP_002921672.1| cell division protein FtsY [Klebsiella pneumoniae NTUH-K2044]
 gi|238549254|dbj|BAH65605.1| cell division membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 507

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 193 LAQEQEKPTKEGFFARLKRSLLKTKQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 252

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 253 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 311

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 312 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 371

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 372 SVIFDAIQAAKARHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDA 431

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 432 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 491

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 492 PFNAGDFIEALFARED 507


>gi|152972338|ref|YP_001337484.1| cell division protein FtsY [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150957187|gb|ABR79217.1| cell division membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 507

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 193 LAQEQEKPTKEGFFARLKRSLLKTKQNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 252

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 253 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 311

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 312 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 371

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 372 SVIFDAIQAAKARHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDA 431

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 432 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 491

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 492 PFNAGDFIEALFARED 507


>gi|288933155|ref|YP_003437214.1| signal recognition particle-docking protein FtsY [Klebsiella
           variicola At-22]
 gi|288887884|gb|ADC56202.1| signal recognition particle-docking protein FtsY [Klebsiella
           variicola At-22]
          Length = 507

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 193 LAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 252

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 253 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 311

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 312 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 371

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 372 SVIFDAIQAAKARHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDA 431

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 432 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 491

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 492 PFNAGDFIEALFARED 507


>gi|227358349|ref|ZP_03842690.1| cell division protein FtsY [Proteus mirabilis ATCC 29906]
 gi|227161685|gb|EEI46722.1| cell division protein FtsY [Proteus mirabilis ATCC 29906]
          Length = 401

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 133/309 (43%), Positives = 192/309 (62%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++   +   +  +L KG   T   L  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 90  EQERPKKEGFFSRLKKGLLKTRQNLGSGFMGLFRGKKIDDELFEELEEQLLIADVGMDTT 149

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L      KD+     LY  + E +  +L  + KP N +   +P VIL+VGVNGV
Sbjct: 150 SKIINSLTQHASRKDLKDAESLYGKLREEMGDILNKVDKPLNIE-GKKPFVILMVGVNGV 208

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     +    G+D A++ 
Sbjct: 209 GKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADPASVI 268

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + AQAK VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+TG
Sbjct: 269 FDAIQSAQAKGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTLDASTG 328

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TGL +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 329 QNAVSQAKLFNETVGLTGLTLTKLDGTAKGGVIFSIADQFGIPIRYIGVGEGIEDLRPFK 388

Query: 303 AKDFSAVIT 311
           A DF   + 
Sbjct: 389 ADDFIEALF 397


>gi|333012439|gb|EGK31820.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           K-304]
          Length = 516

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 202 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 261

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 262 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGV 320

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 321 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 380

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 381 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 440

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 441 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 500

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 501 PFKADDFIEALFARED 516


>gi|255065474|ref|ZP_05317329.1| signal recognition particle-docking protein FtsY [Neisseria sicca
           ATCC 29256]
 gi|255050299|gb|EET45763.1| signal recognition particle-docking protein FtsY [Neisseria sicca
           ATCC 29256]
          Length = 480

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 186/311 (59%), Gaps = 2/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S        L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+ 
Sbjct: 170 SEPSETEPKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGME 229

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             + +++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+N
Sbjct: 230 ATEYLMKDVRNRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPDTKEPFVIMLAGIN 289

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA
Sbjct: 290 GAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAA 348

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA 
Sbjct: 349 VCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDAN 408

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNA+ QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL P
Sbjct: 409 IGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRP 468

Query: 301 FVAKDFSAVIT 311
           F A+ F   + 
Sbjct: 469 FDARAFVDALL 479


>gi|238750712|ref|ZP_04612211.1| Cell division protein ftsY [Yersinia rohdei ATCC 43380]
 gi|238711102|gb|EEQ03321.1| Cell division protein ftsY [Yersinia rohdei ATCC 43380]
          Length = 555

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 128/313 (40%), Positives = 194/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   
Sbjct: 244 EQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETT 303

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + E + ++L  + KP +    + P+VIL+VGVNGV
Sbjct: 304 RKIITSLTEHASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVSGKN-PYVILMVGVNGV 362

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ 
Sbjct: 363 GKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSASVI 422

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TG
Sbjct: 423 FDAIQAAKARGVDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTG 482

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 483 QNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFK 542

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 543 ADDFIEALFARED 555


>gi|238793545|ref|ZP_04637169.1| Cell division protein ftsY [Yersinia intermedia ATCC 29909]
 gi|238727135|gb|EEQ18665.1| Cell division protein ftsY [Yersinia intermedia ATCC 29909]
          Length = 505

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 128/313 (40%), Positives = 193/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   
Sbjct: 194 EQERPTKEGFFARLKRSLLKTKQNLGSGFLGLFSGKKIDDDLFEELEEQLLIADVGVETT 253

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + E + ++L  + KP +    + P VIL+VGVNGV
Sbjct: 254 RKIITSLTEHASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVSGKN-PFVILMVGVNGV 312

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A++ 
Sbjct: 313 GKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVI 372

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TG
Sbjct: 373 FDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTG 432

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 433 QNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFK 492

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 493 ADDFIEALFARED 505


>gi|290511957|ref|ZP_06551325.1| cell division protein FtsY [Klebsiella sp. 1_1_55]
 gi|289775747|gb|EFD83747.1| cell division protein FtsY [Klebsiella sp. 1_1_55]
          Length = 504

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 190 LAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 249

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 250 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 308

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 309 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 368

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 369 SVIFDAIQAAKARHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDA 428

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 429 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 488

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 489 PFNAGDFIEALFARED 504


>gi|90023237|ref|YP_529064.1| signal recognition particle-docking protein FtsY [Saccharophagus
           degradans 2-40]
 gi|89952837|gb|ABD82852.1| signal recognition particle-docking protein FtsY [Saccharophagus
           degradans 2-40]
          Length = 375

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 137/319 (42%), Positives = 208/319 (65%), Gaps = 6/319 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61
             +  SE L    ++ +G + TS +   G+++++  ++ +DD + EE+E LL+ +D+G+ 
Sbjct: 57  EPEPQSEKLGVFARIKRGLSRTSNQFANGLSNLLLGKKAIDDELLEEIETLLLMADVGMD 116

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSH----RPHVILV 116
               I+E+L  +   K ++    LYD + E + K+L  +  PF+ + SH     P+VILV
Sbjct: 117 ATTDIIEDLTDRVARKQLNDSEALYDALRESLAKLLQQVEVPFDLEQSHAPLPSPYVILV 176

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+K+  + G  V+LAAGDTFR+AA++QL++W +R     +    G+
Sbjct: 177 VGVNGVGKTTTIGKLAKRYQNQGKSVILAAGDTFRAAAVEQLQVWGERNKVPVIAQHSGA 236

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D+A++ ++A + AQA+ +DVLI DTAGRLHN S LM  + K+ RV+ +LD  APH VL V
Sbjct: 237 DSASVIFDAVQSAQARGIDVLIADTAGRLHNKSNLMEELAKVKRVMGKLDNTAPHEVLLV 296

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA TGQNA+ Q + F   A  TGL++TK+DGTA+GG +  +   H IPV ++GVGE ++
Sbjct: 297 LDAGTGQNAVSQADHFKKAADVTGLVLTKLDGTAKGGIIFALSKKHNIPVRYIGVGESVD 356

Query: 297 DLEPFVAKDFSAVITGCLD 315
           DL+PF AK F+  +    D
Sbjct: 357 DLQPFDAKKFTEALFSTSD 375


>gi|148261479|ref|YP_001235606.1| signal recognition particle-docking protein FtsY [Acidiphilium
           cryptum JF-5]
 gi|326404963|ref|YP_004285045.1| signal recognition particle-docking protein FtsY [Acidiphilium
           multivorum AIU301]
 gi|146403160|gb|ABQ31687.1| signal recognition particle-docking protein FtsY [Acidiphilium
           cryptum JF-5]
 gi|325051825|dbj|BAJ82163.1| signal recognition particle-docking protein FtsY [Acidiphilium
           multivorum AIU301]
          Length = 312

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 135/303 (44%), Positives = 202/303 (66%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +L ++ +L  G   ++ KL  GITD  + R+LDD   EELEDLLI +D+G A A +++  
Sbjct: 3   ALGFLSRLKSGLTRSTQKLAAGITDTFTKRKLDDAALEELEDLLITADLGPAAAARVIRA 62

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               R+ +DVS   +   ++E + K+L P+++P   D S  P VIL+VGVNG GKTT IG
Sbjct: 63  FRRTRFGQDVSAPEIRASLAEEVAKILAPVAQPLAIDRSKNPFVILMVGVNGTGKTTTIG 122

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++  ++AG + +L AGDTFR+AA++QL++W +RT A  +     +D A LA++A  +A
Sbjct: 123 KLAQSYAEAGARPLLVAGDTFRAAAVEQLQVWGERTGAPVMTGPANADPAGLAFDAIARA 182

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D+++IDTAGRLHN + LM  + K+IRV+++ D  APH+VL  LDATTGQNA+ QV
Sbjct: 183 RRDGHDIVLIDTAGRLHNKAALMEELRKIIRVIRKQDETAPHAVLLTLDATTGQNAIAQV 242

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F  +   TGLI+TK+DG+AR G ++ +  T  +P++ +GVGE   DL PF A +F+  
Sbjct: 243 ATFKEMVDLTGLIVTKLDGSARAGVVVALAETAALPIHAVGVGEQAADLRPFDATEFARA 302

Query: 310 ITG 312
           +TG
Sbjct: 303 LTG 305


>gi|307294714|ref|ZP_07574556.1| signal recognition particle-docking protein FtsY [Sphingobium
           chlorophenolicum L-1]
 gi|306879188|gb|EFN10406.1| signal recognition particle-docking protein FtsY [Sphingobium
           chlorophenolicum L-1]
          Length = 312

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 144/307 (46%), Positives = 197/307 (64%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +     SW  +L  G   TS KL E +T + +   LD+   +E+E+ LI SD+G A+A +
Sbjct: 1   MTEPGTSWRDRLFGGLKRTSDKLGENLTGLFTKAALDEQTLDEIEEALIVSDLGPAMAAR 60

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + + L   RY ++++   +   ++E I K L P+++P   +   RP VILV+GVNG GKT
Sbjct: 61  VRDRLSEGRYNRELTEDYLREIIAEEIEKTLAPVARPLEIEAFPRPQVILVIGVNGSGKT 120

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T I KL+    +    VMLAAGDTFR+AAI QLK+WADR     V  + G DAA + ++A
Sbjct: 121 TTIAKLANNFLEQDYGVMLAAGDTFRAAAIGQLKVWADRLGIPIVAGKEGGDAAGIVFDA 180

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            KQA A  +DVLI+DTAGRL N + LM  + K+ RVL RL+P APH V+ VLDATTGQNA
Sbjct: 181 VKQATATGIDVLIVDTAGRLQNKTELMDELAKIRRVLGRLNPAAPHDVVLVLDATTGQNA 240

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q+E+F  VA  TGL+MTK+DGTARGG L+     +++P++ +GVGE I DL PF   D
Sbjct: 241 LSQIEVFKEVAQVTGLVMTKLDGTARGGVLVAAAEKYRLPIHAIGVGEKIEDLRPFDPGD 300

Query: 306 FSAVITG 312
            +  I G
Sbjct: 301 MARAIAG 307


>gi|218889114|ref|YP_002437978.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           LESB58]
 gi|218769337|emb|CAW25097.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           LESB58]
          Length = 456

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 187/302 (61%), Gaps = 2/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEEL 70
            +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L
Sbjct: 149 GFFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL 208

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 209 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 268

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 269 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 328

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 329 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 388

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F   
Sbjct: 389 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQA 448

Query: 310 IT 311
           + 
Sbjct: 449 LF 450


>gi|167463677|ref|ZP_02328766.1| signal recognition particle-docking protein FtsY [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322382558|ref|ZP_08056438.1| signal recognition particle-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153474|gb|EFX45879.1| signal recognition particle-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 335

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 128/320 (40%), Positives = 194/320 (60%), Gaps = 2/320 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVA 61
            + +++++ +   K  +G + T     E I D+ S  +++D+G  EELE++LI +D+GV 
Sbjct: 8   KESISNKTEAVTNKFKEGLSKTRDVFVERIEDLFSTRKKVDEGFYEELEEILISADVGVN 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVN 120
              +++++L  +   + +    VL  V       L+   K    + +     VIL VGVN
Sbjct: 68  TVMELIDDLRDEVRKRKIEDPGVLQPVLSEKLINLLETGKDAELNLAGEGLSVILFVGVN 127

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++  +   G KVMLAAGDTFR+ AI+QL+ W +R   + +    GSD AA
Sbjct: 128 GVGKTTTIGKMAHMLKSQGKKVMLAAGDTFRAGAIEQLETWGERVGVEVIKQHSGSDPAA 187

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+ + +DVL+ DTAGRL N   LM  + K+ RV++R  P APH VL VLDAT
Sbjct: 188 VMFDALQAAKRRGMDVLLCDTAGRLQNKVNLMEELNKIYRVIRREIPEAPHEVLLVLDAT 247

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q ++F    G TGL++TK+DGTA+GG ++ I     IPV F+G+GE ++DL+ 
Sbjct: 248 TGQNALTQAKLFGDKTGLTGLVLTKLDGTAKGGIVVAIRQELDIPVKFVGLGEKMDDLQK 307

Query: 301 FVAKDFSAVITGCLDYGEEK 320
           F ++ F   + G     EEK
Sbjct: 308 FDSEQFVHALFGKWIAEEEK 327


>gi|206578548|ref|YP_002236165.1| cell division protein FtsY [Klebsiella pneumoniae 342]
 gi|206567606|gb|ACI09382.1| cell division protein FtsY [Klebsiella pneumoniae 342]
          Length = 507

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 193 LAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 252

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 253 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 311

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 312 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 371

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 372 SVIFDAIQAAKARHVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVDAPHEVMLTIDA 431

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 432 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 491

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 492 PFNAGDFIEALFARED 507


>gi|260771642|ref|ZP_05880562.1| signal recognition particle receptor protein FtsY [Vibrio
           metschnikovii CIP 69.14]
 gi|260613419|gb|EEX38618.1| signal recognition particle receptor protein FtsY [Vibrio
           metschnikovii CIP 69.14]
          Length = 388

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 197/309 (63%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    S S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 76  QEQEKPSESFFVRLKRSLSRTKANIGAGFFGLFQGKKIDDQLFEELEEQLLMADVGMETT 135

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K   + +     LY +  + + +ML  + KP   D    P+VIL+VGVNGV
Sbjct: 136 VKIITSLTEKASRQQLRDGEALYALLKQEMAEMLAKVEKPLQIDSQTMPYVILMVGVNGV 195

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ 
Sbjct: 196 GKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNHVPVIAQHTGADSASVI 255

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ +DV+I DTAGRL N + LM  + K++RV+K++DP APH ++  LDA TG
Sbjct: 256 YDAIEAAKARGIDVVIADTAGRLQNKANLMEELKKIVRVMKKIDPQAPHEIMLTLDAGTG 315

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F   A  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PFV
Sbjct: 316 QNAISQAKLFSQAAPLTGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEGIDDLRPFV 375

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 376 TQEFIDALF 384


>gi|270264287|ref|ZP_06192554.1| hypothetical protein SOD_g02240 [Serratia odorifera 4Rx13]
 gi|270041936|gb|EFA15033.1| hypothetical protein SOD_g02240 [Serratia odorifera 4Rx13]
          Length = 525

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 195/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 211 VNQEQERPTKEGFFARLKRSLVKTKQNLGSGFIGLFRGKKIDDDLFEELEEQLLIADVGV 270

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               KI+  L      K +     LY  + E + ++L  + +P +    + P+VIL+VGV
Sbjct: 271 ETTSKIITSLTQHASRKQLKDAEALYGKLKEEMSEILTKVEQPLDVGGKN-PYVILMVGV 329

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A
Sbjct: 330 NGVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVVAQHTGADSA 389

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA
Sbjct: 390 SVIYDAVQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDDQAPHEVMLTLDA 449

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL 
Sbjct: 450 STGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLR 509

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 510 PFKADDFIEALFARED 525


>gi|107099358|ref|ZP_01363276.1| hypothetical protein PaerPA_01000370 [Pseudomonas aeruginosa PACS2]
          Length = 454

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 187/302 (61%), Gaps = 2/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEEL 70
            +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L
Sbjct: 147 GFFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL 206

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 207 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 266

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 267 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 326

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 327 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 386

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F   
Sbjct: 387 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQA 446

Query: 310 IT 311
           + 
Sbjct: 447 LF 448


>gi|254237391|ref|ZP_04930714.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           C3719]
 gi|126169322|gb|EAZ54833.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           C3719]
          Length = 456

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 187/302 (61%), Gaps = 2/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEEL 70
            +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L
Sbjct: 149 GFFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL 208

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 209 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 268

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 269 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 328

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 329 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 388

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F   
Sbjct: 389 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQA 448

Query: 310 IT 311
           + 
Sbjct: 449 LF 450


>gi|238798003|ref|ZP_04641492.1| Cell division protein ftsY [Yersinia mollaretii ATCC 43969]
 gi|238718106|gb|EEQ09933.1| Cell division protein ftsY [Yersinia mollaretii ATCC 43969]
          Length = 534

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 127/315 (40%), Positives = 194/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 221 AQEQERPTKEGFFARLKRSLLKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 280

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +    + P VIL+VGVN
Sbjct: 281 TTRKIITSLTEHASRKQLKDAEALYGKLKEEMSEILSTVDKPLDVSGKN-PFVILMVGVN 339

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 340 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 399

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 400 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 459

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL P
Sbjct: 460 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRP 519

Query: 301 FVAKDFSAVITGCLD 315
           F A DF   +    D
Sbjct: 520 FKADDFIEALFARED 534


>gi|238755241|ref|ZP_04616586.1| Cell division protein ftsY [Yersinia ruckeri ATCC 29473]
 gi|238706582|gb|EEP98954.1| Cell division protein ftsY [Yersinia ruckeri ATCC 29473]
          Length = 528

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 127/316 (40%), Positives = 196/316 (62%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV
Sbjct: 214 VAQEQERPTKEGFFARLKRSLLKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGV 273

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + KP +     +P+VIL+VGV
Sbjct: 274 ETTRKIIASLTEHASRKQLKDAEALYGKLKEEMSEILAKVDKPLDVS-GKKPYVILMVGV 332

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A
Sbjct: 333 NGVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSA 392

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA
Sbjct: 393 SVIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDA 452

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL 
Sbjct: 453 STGQNAVSQAKLFNETVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLR 512

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 513 PFKADDFIEALFARED 528


>gi|323154303|gb|EFZ40506.1| signal recognition particle-docking protein FtsY [Escherichia coli
           EPECa14]
          Length = 527

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 213 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 272

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 273 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 331

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 332 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 391

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 392 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 451

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 452 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 511

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 512 PFKADDFIEALFARED 527


>gi|298382791|ref|ZP_06992386.1| cell division protein FtsY [Escherichia coli FVEC1302]
 gi|298276627|gb|EFI18145.1| cell division protein FtsY [Escherichia coli FVEC1302]
          Length = 527

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 213 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 272

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 273 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 331

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 332 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 391

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 392 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 451

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 452 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 511

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 512 PFKADDFIEALFARED 527


>gi|67643445|ref|ZP_00442191.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei GB8 horse 4]
 gi|121600561|ref|YP_991446.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei SAVP1]
 gi|124383927|ref|YP_001027477.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei NCTC 10229]
 gi|126448883|ref|YP_001082444.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei NCTC 10247]
 gi|167001053|ref|ZP_02266854.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei PRL-20]
 gi|254175216|ref|ZP_04881877.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei ATCC 10399]
 gi|254201698|ref|ZP_04908062.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei FMH]
 gi|254207032|ref|ZP_04913383.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei JHU]
 gi|254357511|ref|ZP_04973785.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei 2002721280]
 gi|121229371|gb|ABM51889.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei SAVP1]
 gi|124291947|gb|ABN01216.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei NCTC 10229]
 gi|126241753|gb|ABO04846.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei NCTC 10247]
 gi|147747592|gb|EDK54668.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei FMH]
 gi|147752574|gb|EDK59640.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei JHU]
 gi|148026575|gb|EDK84660.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei 2002721280]
 gi|160696261|gb|EDP86231.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei ATCC 10399]
 gi|238524797|gb|EEP88228.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei GB8 horse 4]
 gi|243063123|gb|EES45309.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei PRL-20]
          Length = 439

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 128/304 (42%), Positives = 186/304 (61%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ 
Sbjct: 142 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 197

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K F    +  P V+++ GVNG GKTT I
Sbjct: 198 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSFVLGRAQ-PLVMMIAGVNGAGKTTSI 256

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 257 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 315

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 316 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 375

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 376 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 435

Query: 309 VITG 312
            + G
Sbjct: 436 ALLG 439


>gi|269103876|ref|ZP_06156573.1| signal recognition particle receptor protein FtsY [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163774|gb|EEZ42270.1| signal recognition particle receptor protein FtsY [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 462

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 198/309 (64%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++   +S  +  +L +G   T          +   +++DD + EELE+ L+ +D+G+   
Sbjct: 150 EQEKPKSEGFFARLMRGLRKTKENFGSSFFSLFKGKKIDDELFEELEEQLLIADVGMDTT 209

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+E L  K   K++     LY  + + + +ML  + +PF  D S +P+VIL+VGVNGV
Sbjct: 210 VKIIENLTEKASRKELKDGEALYGLLKDELAEMLAKVEQPFEIDTSKKPYVILMVGVNGV 269

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ 
Sbjct: 270 GKTTTIGKLAKKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVI 329

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+AK +DV+I DTAGRL N + LM  + K++RV+K++DP APH ++  LDA TG
Sbjct: 330 FDAIESAKAKNIDVIIADTAGRLQNKANLMEELRKIVRVMKKIDPDAPHEIMLTLDAGTG 389

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  +G+ +TK+DGTA+GG +  I     IP+ ++G+GEGI+DL PF 
Sbjct: 390 QNAISQAKLFSEVAPVSGITLTKLDGTAKGGVIFAIADQFHIPIRYIGIGEGIDDLRPFA 449

Query: 303 AKDFSAVIT 311
           A +F   + 
Sbjct: 450 ADEFIEALF 458


>gi|323141213|ref|ZP_08076114.1| signal recognition particle-docking protein FtsY
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414356|gb|EFY05174.1| signal recognition particle-docking protein FtsY
           [Phascolarctobacterium sp. YIT 12067]
          Length = 305

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 122/306 (39%), Positives = 184/306 (60%), Gaps = 4/306 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     + I +++  S  +DD   +ELE +L+ +D+GV   +K+++ 
Sbjct: 1   MGFFERLKEGLSKTRRNFTDRIQELVGLSAAIDDDFLDELEMILLSADVGVKTTEKLIDA 60

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +      K++S    +   + + + +ML    +        +P VILVVGVNGVGKTT I
Sbjct: 61  VRKAAKKKEISGTEDVIPFLKKYMAEMLADSGQRTRIGA--KPTVILVVGVNGVGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+   +    KV+LAAGDTFR+AA +QL+IW +R   D +    G+D AA+ ++A K 
Sbjct: 119 GKLANYFTLFKYKVVLAAGDTFRAAAGEQLQIWGERAHCDVIRHAEGADPAAVVFDAMKA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A A+K D+L IDTAGRLHN + LM  + K+ R++KR  P APH    VLDATTGQNA+ Q
Sbjct: 179 AIARKADILFIDTAGRLHNKANLMNELEKIHRIIKREIPEAPHETFLVLDATTGQNAINQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F   A  TG+++TK+DGTA+GG ++ I     +PV ++GVGEGI D  PF    F  
Sbjct: 239 AKVFMETAKVTGVVLTKLDGTAKGGVVVAIKEELGLPVKWIGVGEGIMDFRPFEPDKFVE 298

Query: 309 VITGCL 314
            +    
Sbjct: 299 ALFDSG 304


>gi|253999629|ref|YP_003051692.1| signal recognition particle-docking protein FtsY [Methylovorus sp.
           SIP3-4]
 gi|253986308|gb|ACT51165.1| signal recognition particle-docking protein FtsY [Methylovorus sp.
           SIP3-4]
          Length = 341

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 121/305 (39%), Positives = 179/305 (58%), Gaps = 1/305 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A   LSW  +L  G A T  +L   +  +    ++D+ V EELE +L+ SD+GVA  Q +
Sbjct: 37  AENKLSWTERLKNGLAKTRSQLGNQLASLFGGGKIDEDVYEELETILLTSDVGVAATQAL 96

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E++  +   + +S    L    +     L+   +      +H+P VI++ GVNG GKTT
Sbjct: 97  LEQIRQRVKRQSLSDTTQLKQALKDALLELLAPLEKPLVTTTHQPFVIMLAGVNGAGKTT 156

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+      G  V++AAGDTFR+AA +QL+ W DR +   V  E   D AA+ ++A 
Sbjct: 157 SIGKLANLFQAQGKSVLIAAGDTFRAAAREQLQAWGDRNNVHVVAQE-SGDPAAVIFDAV 215

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+ +D+++ DTAGRL     LM  I K+ RV+ +  P APH +L VLDA TGQNA+
Sbjct: 216 NSAKARNIDIVLADTAGRLPTQLNLMEEIRKVQRVIGKALPGAPHEILLVLDANTGQNAI 275

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QV+ F    G TGL+++K+DGTA+GG +  I     IP+ ++GVGE I DL PF A++F
Sbjct: 276 SQVKAFDDALGVTGLVLSKLDGTAKGGVIAAIAQARPIPIRYIGVGESIADLRPFKAEEF 335

Query: 307 SAVIT 311
              + 
Sbjct: 336 VDALF 340


>gi|261364318|ref|ZP_05977201.1| signal recognition particle-docking protein FtsY [Neisseria mucosa
           ATCC 25996]
 gi|288567574|gb|EFC89134.1| signal recognition particle-docking protein FtsY [Neisseria mucosa
           ATCC 25996]
          Length = 483

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 186/311 (59%), Gaps = 2/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S        L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+ 
Sbjct: 173 SKPSETEPKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGME 232

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             + +++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+N
Sbjct: 233 ATEYLMKDVRNRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGIN 292

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA
Sbjct: 293 GAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAA 351

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +D+++ DTAGRL     LM  I K+ RVLK+  P APH ++ VLDA 
Sbjct: 352 VCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLKKAMPDAPHEIIVVLDAN 411

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNA+ QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL P
Sbjct: 412 IGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRP 471

Query: 301 FVAKDFSAVIT 311
           F A+ F   + 
Sbjct: 472 FNARAFVDALL 482


>gi|302877705|ref|YP_003846269.1| signal recognition particle-docking protein FtsY [Gallionella
           capsiferriformans ES-2]
 gi|302580494|gb|ADL54505.1| signal recognition particle-docking protein FtsY [Gallionella
           capsiferriformans ES-2]
          Length = 321

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 139/314 (44%), Positives = 200/314 (63%), Gaps = 8/314 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGV 60
             ++  +E  SWI +L  G + T  +L     D+ S   ++DD + EELE +LI +D+G+
Sbjct: 12  KAEETVAEKRSWIDRLKAGLSRTGNQL----ADLFSRGGKIDDDLYEELETILITADVGM 67

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
                ++ +L    R  K V  + +   ++  + K+L PL+ P + + +H+P VI++VGV
Sbjct: 68  DATNTLLADLRRHVREHKLVEAEELKAGLAHCLLKLLGPLAVPLHAE-THKPFVIMMVGV 126

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+K +   GL VMLAAGDTFR+AA +QL  W +R +   +  + G  A 
Sbjct: 127 NGAGKTTSIGKLAKYLQSQGLSVMLAAGDTFRAAAREQLMTWGERNNVTVIAQQSGDAA- 185

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A + AQA+K+DV++ DTAGRL   + LM  I K+ RV+ ++ P APH VL VLDA
Sbjct: 186 AVIYDAVQAAQARKIDVVLADTAGRLTTQAHLMEEIKKVKRVIAKVLPDAPHEVLLVLDA 245

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNAL QV+ F A  G TGLI+TK+DGTA+GG +  I   H IPV F+GVGEG++DL 
Sbjct: 246 NTGQNALSQVKAFDAALGVTGLILTKLDGTAKGGVIAAIAKAHPIPVRFIGVGEGLDDLR 305

Query: 300 PFVAKDFSAVITGC 313
           PF A++F   + G 
Sbjct: 306 PFDAQEFIDALLGL 319


>gi|323934550|gb|EGB30950.1| signal recognition particle-docking protein FtsY [Escherichia coli
           E1520]
          Length = 516

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 202 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 261

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 262 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 320

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 321 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 380

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 381 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 440

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 441 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 500

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 501 PFKADDFIEALFARED 516


>gi|217419579|ref|ZP_03451085.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 576]
 gi|217396883|gb|EEC36899.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 576]
          Length = 439

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ 
Sbjct: 142 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 197

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 198 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 256

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 257 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 315

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 316 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 375

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 376 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 435

Query: 309 VITG 312
            + G
Sbjct: 436 ALLG 439


>gi|313201669|ref|YP_004040327.1| signal recognition particle-docking protein ftsy [Methylovorus sp.
           MP688]
 gi|312440985|gb|ADQ85091.1| signal recognition particle-docking protein FtsY [Methylovorus sp.
           MP688]
          Length = 344

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 121/305 (39%), Positives = 179/305 (58%), Gaps = 1/305 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A   LSW  +L  G A T  +L   +  +    ++D+ V EELE +L+ SD+GVA  Q +
Sbjct: 40  AENKLSWTERLKNGLAKTRSQLGNQLASLFGGGKIDEDVYEELETILLTSDVGVAATQAL 99

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E++  +   + +S    L    +     L+   +      +H+P VI++ GVNG GKTT
Sbjct: 100 LEQIRQRVKRQSLSDTTQLKQALKDALLELLAPLEKPLVTTTHQPFVIMLAGVNGAGKTT 159

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+      G  V++AAGDTFR+AA +QL+ W DR +   V  E   D AA+ ++A 
Sbjct: 160 SIGKLANLFQVQGKSVLIAAGDTFRAAAREQLQAWGDRNNVHVVAQE-SGDPAAVIFDAV 218

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+ +D+++ DTAGRL     LM  I K+ RV+ +  P APH +L VLDA TGQNA+
Sbjct: 219 NSAKARNIDIVLADTAGRLPTQLNLMEEIRKVQRVIGKALPGAPHEILLVLDANTGQNAI 278

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QV+ F    G TGL+++K+DGTA+GG +  I     IP+ ++GVGE I DL PF A++F
Sbjct: 279 SQVKAFDDALGVTGLVLSKLDGTAKGGVIAAIAQARPIPIRYIGVGESIADLRPFKAEEF 338

Query: 307 SAVIT 311
              + 
Sbjct: 339 VDALF 343


>gi|148978744|ref|ZP_01815124.1| cell division protein FtsY [Vibrionales bacterium SWAT-3]
 gi|145962165|gb|EDK27449.1| cell division protein FtsY [Vibrionales bacterium SWAT-3]
          Length = 411

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 129/310 (41%), Positives = 197/310 (63%), Gaps = 1/310 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            +     + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+  
Sbjct: 98  EEVQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMNT 157

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             KI+E L  K    D+     LY  + E +  +L  + +P   D +  P+VIL+VGVNG
Sbjct: 158 TVKIIENLTEKASRNDLKDGEALYGLLKEEMADILSQVEQPLVVDTTKTPYVILMVGVNG 217

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+K+  + G KVMLAAGDTFR+AA++QL++W  R     +    G+D+A++
Sbjct: 218 VGKTTTIGKLAKQFQNEGKKVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASV 277

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A + A+A+ VDV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA T
Sbjct: 278 IYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGT 337

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PF
Sbjct: 338 GQNAISQAKLFSEVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRYIGVGEGIDDLRPF 397

Query: 302 VAKDFSAVIT 311
            +KDF   + 
Sbjct: 398 ESKDFIEALF 407


>gi|119384655|ref|YP_915711.1| signal recognition particle-docking protein FtsY [Paracoccus
           denitrificans PD1222]
 gi|119374422|gb|ABL70015.1| signal recognition particle-docking protein FtsY [Paracoccus
           denitrificans PD1222]
          Length = 346

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 138/347 (39%), Positives = 207/347 (59%), Gaps = 43/347 (12%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-------------------------------- 38
           +S+  KL      +S K+  G+ DI+S                                 
Sbjct: 1   MSFFSKLRDRLTRSSSKIGSGLEDIVSEAAADEKPASPAPAASQPATEPEARPGVLGRLL 60

Query: 39  ----------RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
                     R LDD + EELE++LI++D+GV  A ++   +   R  + VS   +   +
Sbjct: 61  GRAPAVAEPRRELDDAMLEELEEMLIQADMGVETALRVTANIAEGRMGRRVSATELKELL 120

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++ I +++ P++KP    +  RP V+LVVGVNG GKTT IGKL+ +   AG KV++AAGD
Sbjct: 121 ADEIARIMTPVAKPLPL-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGD 179

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+AA++QL++W  R     + +  GSD A+LA++A  +A+A+  D+L+IDTAGRL N 
Sbjct: 180 TFRAAAVEQLQVWGQRAGVPVMTAPEGSDPASLAFDAMTKAEAEGADLLMIDTAGRLQNR 239

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  + K++RV+++ DP APH+ L VLDATTGQNAL QVE+F  +A  +GL+MTK+DG
Sbjct: 240 QDLMEELAKIVRVIRKKDPSAPHNTLLVLDATTGQNALSQVEIFRKLADVSGLVMTKLDG 299

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TARGG L+ +     +P++ +GVGE I+DL+ F A+DF+  + G  D
Sbjct: 300 TARGGVLVALADRFGLPIHAIGVGEQIDDLDAFDARDFARALVGLGD 346


>gi|90421736|ref|YP_530106.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris BisB18]
 gi|90103750|gb|ABD85787.1| signal recognition particle-docking protein FtsY [Rhodopseudomonas
           palustris BisB18]
          Length = 316

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 150/310 (48%), Positives = 210/310 (67%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           N    ++  SW R+L+ G   TS  +   + + ++ R+LD  + +E+ED+L+R+D+G  V
Sbjct: 2   NDTTETKKPSWWRRLSSGLKRTSSSIGTALAEFVTKRKLDRAMLDEIEDVLLRADLGTEV 61

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + +I   +   RY K +S   V   V+  + K+L P+++P   D +H+P VIL+VGVNG 
Sbjct: 62  SARIAAAVGVGRYDKMISAGDVKTIVAAEVEKVLAPVAQPLVIDAAHKPFVILMVGVNGS 121

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ K +  G KVMLAAGDTFR+AAI+QLK+W +RT A  +    GSD+A LA
Sbjct: 122 GKTTTIGKLAAKFAAEGRKVMLAAGDTFRAAAIEQLKVWGERTGAPVISGTQGSDSAGLA 181

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           + A   A+  + DVL+IDTAGRL N + LM  + K++RV+K++D  APH+VL VLDAT G
Sbjct: 182 FTALTAAKDDRRDVLLIDTAGRLQNKAELMNELEKVVRVIKKVDATAPHAVLLVLDATVG 241

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QVE F   AG TGL+MTK+DGTARGG L+ +   +K+PV+F+GVGE + DL PF 
Sbjct: 242 QNALSQVEAFSRTAGVTGLVMTKLDGTARGGILVALAEKYKLPVHFVGVGESVEDLAPFT 301

Query: 303 AKDFSAVITG 312
           A DF+  I G
Sbjct: 302 AADFAKAIAG 311


>gi|237810765|ref|YP_002895216.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei MSHR346]
 gi|237505520|gb|ACQ97838.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei MSHR346]
          Length = 438

 Score =  309 bits (793), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 128/304 (42%), Positives = 185/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  
Sbjct: 141 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGA 196

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D + EL+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 197 LREKVRAGRLTDPQQVKDALRELLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 255

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 256 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 314

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 315 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 374

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 375 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 434

Query: 309 VITG 312
            + G
Sbjct: 435 ALLG 438


>gi|167917481|ref|ZP_02504572.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei BCC215]
 gi|254187806|ref|ZP_04894318.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254197031|ref|ZP_04903455.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei S13]
 gi|254261869|ref|ZP_04952923.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1710a]
 gi|157935486|gb|EDO91156.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169653774|gb|EDS86467.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei S13]
 gi|254220558|gb|EET09942.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1710a]
          Length = 439

 Score =  309 bits (793), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ 
Sbjct: 142 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 197

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 198 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 256

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 257 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 315

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 316 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 375

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 376 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 435

Query: 309 VITG 312
            + G
Sbjct: 436 ALLG 439


>gi|153835089|ref|ZP_01987756.1| cell division protein FtsY [Vibrio harveyi HY01]
 gi|148868439|gb|EDL67547.1| cell division protein FtsY [Vibrio harveyi HY01]
          Length = 410

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 199/309 (64%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 98  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMETT 157

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY  + E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 158 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILAKVEQPLEIDSSKTPYVILMVGVNGV 217

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+  + G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 218 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 277

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 278 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 337

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF 
Sbjct: 338 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFE 397

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 398 TQEFIDALF 406


>gi|325925082|ref|ZP_08186502.1| cell division protein FtsY (SRP receptor) [Xanthomonas perforans
           91-118]
 gi|325544498|gb|EGD15861.1| cell division protein FtsY (SRP receptor) [Xanthomonas perforans
           91-118]
          Length = 551

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  LI +D+G+     +++
Sbjct: 248 KPGWRERLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALID 301

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  +++ V  Q +   +   +  +L P+SKP   D S +P V+L VGVNGVGKTT 
Sbjct: 302 GLRKRMKSREFVDAQALFKALRADLIALLQPVSKPLVIDRSLKPFVVLTVGVNGVGKTTT 361

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W DR     +     +DAA++A++A +
Sbjct: 362 IGKLAKRFKDEGNSLMLAAGDTFRAAAVAQLQAWGDRNGVAVIAQGQNADAASVAFDALQ 421

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DVLI DTAGRLH  + LM  +GK+ RVL ++D  APH VL V+D TTGQNA+ 
Sbjct: 422 AAKARGTDVLIADTAGRLHTQTGLMNELGKIRRVLGKIDAAAPHEVLMVIDGTTGQNAIS 481

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F    F 
Sbjct: 482 QLRQFHAAVGVTGLVLTKLDGTAKGGVVFALAREFNIPIRFAGIGERPEDLRVFDPVAFV 541

Query: 308 AVIT 311
             + 
Sbjct: 542 DALL 545


>gi|120601367|ref|YP_965767.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           vulgaris DP4]
 gi|120561596|gb|ABM27340.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           vulgaris DP4]
          Length = 483

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 124/322 (38%), Positives = 192/322 (59%), Gaps = 9/322 (2%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           +  +    E    + KLT+G A T  ++   I  +++S  R+D+G  EELE++LI +D+G
Sbjct: 166 LDLEDEEDERSRLMLKLTEGLARTREQIGRRIDGLLASHGRIDEGFWEELEEILIMADVG 225

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVG 118
                +++  L  +                EL+ + L  + + P      + P V+L++G
Sbjct: 226 FEPTTQLIGRLRERARKAGTDDPARFR---ELLREELEVIFRAPRRIAAVNPPEVVLLIG 282

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT I KL+ +    G KV++AAGDTFR+AAI+QL+IWA R  A F     G+D 
Sbjct: 283 VNGVGKTTTIAKLAYRAQLQGRKVLIAAGDTFRAAAIEQLEIWAKRVGAGFYAKTAGADP 342

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+AYEA  +A ++  D+L++DTAGRLH  + LM  + K+ +VL R  P APH  + V+D
Sbjct: 343 AAVAYEAMDKAVSEGYDLLLVDTAGRLHTKANLMEELHKIRKVLGRKHPGAPHRSILVID 402

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q ++F+   G   +++TK+DGTA+GG ++ + +   IP+ ++G+GE + D+
Sbjct: 403 ATTGQNALSQTKLFNEACGVDEIVLTKLDGTAKGGIVVAVAMQFGIPITYVGLGEKMEDM 462

Query: 299 EPFVAKDFSAVITGCLDYGEEK 320
            PF   DF+  + G     EEK
Sbjct: 463 RPFNGSDFAMALLGV----EEK 480


>gi|332159847|ref|YP_004296424.1| cell division protein [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318607607|emb|CBY29105.1| signal recognition particle receptor protein FtsY (=alpha subunit)
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664077|gb|ADZ40721.1| cell division protein [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 481

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 128/307 (41%), Positives = 191/307 (62%), Gaps = 2/307 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
              +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  
Sbjct: 176 KEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITS 235

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      K +     LY  + E + ++L  + KP +    + P VIL+VGVNGVGKTT I
Sbjct: 236 LTEHASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVSGKN-PFVILMVGVNGVGKTTTI 294

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A++ ++A + 
Sbjct: 295 GKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQA 354

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q
Sbjct: 355 AKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQ 414

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF  
Sbjct: 415 AKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDFIE 474

Query: 309 VITGCLD 315
            +    D
Sbjct: 475 ALFARED 481


>gi|123440617|ref|YP_001004611.1| cell division protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087578|emb|CAL10359.1| cell division protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 507

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 128/307 (41%), Positives = 191/307 (62%), Gaps = 2/307 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
              +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  
Sbjct: 202 KEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITS 261

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      K +     LY  + E + ++L  + KP +    + P VIL+VGVNGVGKTT I
Sbjct: 262 LTEHASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVSGKN-PFVILMVGVNGVGKTTTI 320

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A++ ++A + 
Sbjct: 321 GKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQA 380

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q
Sbjct: 381 AKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQ 440

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF  
Sbjct: 441 AKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFKADDFIE 500

Query: 309 VITGCLD 315
            +    D
Sbjct: 501 ALFARED 507


>gi|167579753|ref|ZP_02372627.1| signal recognition particle-docking protein FtsY [Burkholderia
           thailandensis TXDOH]
          Length = 425

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 128/304 (42%), Positives = 183/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD GV   + ++  
Sbjct: 128 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGVDATEHLLGA 183

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K     ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 184 LREKVRTGRLTDPQQVKDALRGLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 242

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 243 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 301

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 302 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 361

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++F+ 
Sbjct: 362 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFAD 421

Query: 309 VITG 312
            + G
Sbjct: 422 ALLG 425


>gi|121533798|ref|ZP_01665625.1| signal recognition particle-docking protein FtsY [Thermosinus
           carboxydivorans Nor1]
 gi|121307789|gb|EAX48704.1| signal recognition particle-docking protein FtsY [Thermosinus
           carboxydivorans Nor1]
          Length = 307

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 131/303 (43%), Positives = 187/303 (61%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL  G   T     E I  +I+   ++DD   +ELE +L+ +D+G+     ++++
Sbjct: 3   MGFFDKLKAGLEKTRKNFTEKIEQLITGYTKIDDEFLDELEAVLLSADVGIKTTATLMKD 62

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +      +++     L  V  E +  +L              P VILVVGVNGVGKTT I
Sbjct: 63  IRQAIKNREIETPEQLKPVLQERLCAVLSEGWTGMRL-APEPPTVILVVGVNGVGKTTTI 121

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL       GLKV+LAAGDTFR+AAIDQL+IW  R  A+ +    GSD AA+A++A + 
Sbjct: 122 GKLGNYYRQLGLKVLLAAGDTFRAAAIDQLEIWGQRIGAEVIKHSEGSDPAAVAFDAVQA 181

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+K +++IIDTAGRLH  S LM  + K+ RV+ R  P APH  L VLDATTGQNA+ Q
Sbjct: 182 AKARKAEIVIIDTAGRLHTKSNLMEELKKIRRVIAREIPDAPHETLLVLDATTGQNAISQ 241

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+++TK+DGTA+GG ++ I     +PV ++GVGEG+NDL PF A+DF+A
Sbjct: 242 AKLFSEATGVTGVVLTKLDGTAKGGVVVAIKTELGLPVKWVGVGEGVNDLRPFNAQDFAA 301

Query: 309 VIT 311
            + 
Sbjct: 302 ALF 304


>gi|258546171|ref|ZP_05706405.1| signal recognition particle-docking protein FtsY [Cardiobacterium
           hominis ATCC 15826]
 gi|258518596|gb|EEV87455.1| signal recognition particle-docking protein FtsY [Cardiobacterium
           hominis ATCC 15826]
          Length = 428

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 121/309 (39%), Positives = 186/309 (60%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           K  +ES  +  ++ +G A T      G  D+    + LD  + ++LE  L+ +D+G+ V 
Sbjct: 122 KPKNESGGYFARIRQGLAKTR----RGFADLFLGKKTLDQDLIDDLETQLLTADVGIEVT 177

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + I++ +  +   K++     +   V + + ++L P ++P +   + +P VIL+ G+NG 
Sbjct: 178 RNIIDSVTAQIDRKELKDVEAVKAAVRDHMQQLLAPYAQPLDTSRT-KPFVILMTGINGA 236

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++     G KVMLAAGDTFR+AA++QL+ W  R +   +    G+DAA++A
Sbjct: 237 GKTTTIGKLARYFQQEGKKVMLAAGDTFRAAAVEQLQTWGARHNVPVIAQGTGADAASVA 296

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A A+ +DVLIIDTAGRLH    LM  + K+ RV+ +LDP APH  + ++DA  G
Sbjct: 297 YDALQSATARGIDVLIIDTAGRLHTQDHLMEELKKIKRVIAKLDPAAPHETMLIIDAGNG 356

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNALRQ E FH       + +TK+DGTA+GG L  I     IP+ ++GVGE   DL PF 
Sbjct: 357 QNALRQAEQFHKAMQLDSITVTKLDGTAKGGILFAISEKLGIPIRYIGVGEQPEDLRPFN 416

Query: 303 AKDFSAVIT 311
           A++F   + 
Sbjct: 417 AQEFVQALL 425


>gi|324116338|gb|EGC10257.1| signal recognition particle-docking protein FtsY [Escherichia coli
           E1167]
          Length = 515

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 201 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 260

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 261 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 319

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 320 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 379

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 380 SVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 439

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 440 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 499

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 500 PFKADDFIEALFARED 515


>gi|319409458|emb|CBI83107.1| cell division protein [Bartonella schoenbuchensis R1]
          Length = 407

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 159/305 (52%), Positives = 228/305 (74%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
            +  +W  +L KG + +S +L + +  +   ++LD+   +ELE++LI++D+GV  A +I 
Sbjct: 100 EQKEAWFERLKKGLSLSSQQLSDSLGALFIKKKLDEDTLQELENILIQADLGVETATRIT 159

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + L + RY KD+S+  +   +++ I K+L P++ P   D SH+PHVIL+VGVNG GKTT 
Sbjct: 160 DILASSRYEKDLSLDDLYTIMADEIKKVLEPVAIPLELDLSHKPHVILLVGVNGTGKTTT 219

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ K+++ GLK+ LAAGDTFR+AAI+QL IW +RT A+ + +++G+DAA+LA++A++
Sbjct: 220 IGKLAAKLAEGGLKITLAAGDTFRAAAIEQLHIWGERTGANVISTKLGADAASLAFDAYE 279

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+ ++ DVLIIDTAGRL N S LM  + K+IRVLK+ +P APH+VLQ LDATTGQNAL 
Sbjct: 280 KAKKEESDVLIIDTAGRLQNKSELMDELAKIIRVLKKHNPQAPHTVLQTLDATTGQNALN 339

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QV++FH VAG  GL+MTK+DGTARGG LI I   +K+PVYF+G+GE I DLEPF A DF+
Sbjct: 340 QVDIFHNVAGVNGLVMTKLDGTARGGILIAIANKYKLPVYFIGIGEKIEDLEPFSASDFA 399

Query: 308 AVITG 312
             I G
Sbjct: 400 KAIVG 404


>gi|46581462|ref|YP_012270.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450884|gb|AAS97530.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235115|gb|ADP87969.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           vulgaris RCH1]
          Length = 488

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 124/322 (38%), Positives = 192/322 (59%), Gaps = 9/322 (2%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           +  +    E    + KLT+G A T  ++   I  +++S  R+D+G  EELE++LI +D+G
Sbjct: 171 LDLEDEEDERSRLMLKLTEGLARTREQIGRRIDGLLASHGRIDEGFWEELEEILIMADVG 230

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVG 118
                +++  L  +                EL+ + L  + + P      + P V+L++G
Sbjct: 231 FEPTTQLIGRLRERARKAGTDDPARFR---ELLREELEVIFRAPRRIAAVNPPEVVLLIG 287

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT I KL+ +    G KV++AAGDTFR+AAI+QL+IWA R  A F     G+D 
Sbjct: 288 VNGVGKTTTIAKLAYRAQLQGRKVLIAAGDTFRAAAIEQLEIWAKRVGAGFYAKTAGADP 347

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+AYEA  +A ++  D+L++DTAGRLH  + LM  + K+ +VL R  P APH  + V+D
Sbjct: 348 AAVAYEAMDKAVSEGYDLLLVDTAGRLHTKANLMEELHKIRKVLGRKHPGAPHRSILVID 407

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q ++F+   G   +++TK+DGTA+GG ++ + +   IP+ ++G+GE + D+
Sbjct: 408 ATTGQNALSQTKLFNEACGVDEIVLTKLDGTAKGGIVVAVAMQFGIPITYVGLGEKMEDM 467

Query: 299 EPFVAKDFSAVITGCLDYGEEK 320
            PF   DF+  + G     EEK
Sbjct: 468 RPFNGSDFAMALLGV----EEK 485


>gi|331679532|ref|ZP_08380202.1| cell division protein FtsY [Escherichia coli H591]
 gi|331072704|gb|EGI44029.1| cell division protein FtsY [Escherichia coli H591]
          Length = 527

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 213 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 272

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 273 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 331

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 332 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 391

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 392 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 451

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 452 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 511

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 512 PFKADDFIEALFARED 527


>gi|323492926|ref|ZP_08098066.1| signal recognition particle-docking protein FtsY [Vibrio
           brasiliensis LMG 20546]
 gi|323312819|gb|EGA65943.1| signal recognition particle-docking protein FtsY [Vibrio
           brasiliensis LMG 20546]
          Length = 404

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 129/312 (41%), Positives = 200/312 (64%), Gaps = 1/312 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  A T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 93  EQDKPTESFFARLKRSLARTKANIGAGFFGLFKGKQIDDDLFEELEEQLLIADVGMDTTL 152

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+E L  K   +++     LY  + E + ++L  + KP   D S  P+VIL+VGVNGVG
Sbjct: 153 KIIENLTEKASRQELKDGEALYGLLKEEMAEILSNVEKPLEVDSSKAPYVILMVGVNGVG 212

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ Y
Sbjct: 213 KTTTIGKLAKQFQAEGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIY 272

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+AK VDV+I DTAGRL N + LM  + K++RV++++D  APH ++  LDA TGQ
Sbjct: 273 DAIESAKAKGVDVVIADTAGRLQNKANLMEELRKIVRVMQKVDGSAPHEIMLTLDAGTGQ 332

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PF  
Sbjct: 333 NAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFET 392

Query: 304 KDFSAVITGCLD 315
           ++F   +    D
Sbjct: 393 QEFIDALFSRED 404


>gi|24114724|ref|NP_709234.1| cell division protein FtsY [Shigella flexneri 2a str. 301]
 gi|30065259|ref|NP_839430.1| cell division protein FtsY [Shigella flexneri 2a str. 2457T]
 gi|24053940|gb|AAN44941.1| cell division membrane protein [Shigella flexneri 2a str. 301]
 gi|30043521|gb|AAP19241.1| cell division membrane protein [Shigella flexneri 2a str. 2457T]
 gi|313647237|gb|EFS11689.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           2a str. 2457T]
 gi|332750283|gb|EGJ80694.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           4343-70]
          Length = 498

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|294012738|ref|YP_003546198.1| signal recognition particle GTPase [Sphingobium japonicum UT26S]
 gi|292676068|dbj|BAI97586.1| signal recognition particle GTPase [Sphingobium japonicum UT26S]
          Length = 310

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 144/303 (47%), Positives = 196/303 (64%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SW  +L  G   TS KL E +T + +   LD+   +E+E+ LI SD+G A+A ++ + 
Sbjct: 3   ETSWRDRLFGGLKRTSDKLGENLTGLFTKAALDEQTLDEIEEALIVSDLGPAMAARVRDR 62

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L   RY ++++   +   ++E I K L P+++P   +   RP VILV+GVNG GKTT I 
Sbjct: 63  LSEGRYNRELTEDYLREIIAEEIEKTLAPVARPLEIEAFPRPQVILVIGVNGSGKTTTIA 122

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+    +    VMLAAGDTFR+AAI QLK+WADR     V  + G DAA + ++A KQA
Sbjct: 123 KLANLFLEQDYGVMLAAGDTFRAAAIGQLKVWADRLGIPIVAGKEGGDAAGIVFDAVKQA 182

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A  +DVLI+DTAGRL N + LM  + K+ RVL RL+P APH V+ VLDATTGQNAL Q+
Sbjct: 183 TATGIDVLIVDTAGRLQNKTELMDELAKIRRVLGRLNPAAPHDVVLVLDATTGQNALSQI 242

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F  VA  TGL+MTK+DGTARGG L+     +++P++ +GVGE I DL PF   D +  
Sbjct: 243 EVFKEVAQVTGLVMTKLDGTARGGVLVAAAEKYRLPIHAIGVGEKIEDLRPFDPGDMARA 302

Query: 310 ITG 312
           I G
Sbjct: 303 IAG 305


>gi|240851394|ref|YP_002972797.1| cell division protein FtsY [Bartonella grahamii as4aup]
 gi|240268517|gb|ACS52105.1| cell division protein FtsY [Bartonella grahamii as4aup]
          Length = 417

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 157/312 (50%), Positives = 223/312 (71%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S   V  + ++W  +L K  + +S +L   I+D+   R+LD+   +E ED+LI++D+GV
Sbjct: 103 LSEPSVEQKKIAWFGRLKKSLSLSSQRLSGSISDLFVKRKLDEDTLQEFEDILIQADLGV 162

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A +I   L + RY KD+S   +   V++ + K+L P++ P   D S++PHVIL+VGVN
Sbjct: 163 ETATRITNTLASSRYGKDLSPDDIHTIVADEVKKVLEPVAIPLELDLSYKPHVILLVGVN 222

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++  GLKVMLAAGDTFR+AAI+QL IW  RT +  + +++G+DAA+
Sbjct: 223 GTGKTTTIGKLAAKLTAGGLKVMLAAGDTFRAAAIEQLHIWGKRTDSPVISTKLGADAAS 282

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++A+++A+    DVLIIDTAGRL N S LM  + K+IRVLK+  P APH++LQ LDAT
Sbjct: 283 LAFDAYEKAKKANSDVLIIDTAGRLQNKSELMDELAKIIRVLKKHTPQAPHTILQTLDAT 342

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV++F  +AG  GL+MTK+DG+ARGG L+ I   +K+PVYF+G+GE I DL+P
Sbjct: 343 TGQNALNQVKIFRDIAGVNGLVMTKLDGSARGGILVAIAAKYKLPVYFIGIGENIEDLQP 402

Query: 301 FVAKDFSAVITG 312
           F A DF+  I G
Sbjct: 403 FSASDFAETIAG 414


>gi|332090291|gb|EGI95389.1| signal recognition particle-docking protein FtsY [Shigella boydii
           3594-74]
          Length = 515

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 201 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 260

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 261 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 319

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 320 NGVGKTTTIGKLARQFELQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 379

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 380 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 439

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 440 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 499

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 500 PFKADDFIEALFARED 515


>gi|323162704|gb|EFZ48543.1| signal recognition particle-docking protein FtsY [Escherichia coli
           E128010]
          Length = 515

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 124/316 (39%), Positives = 192/316 (60%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 201 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 260

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 261 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 319

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 320 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 379

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD   PH V+  +DA
Sbjct: 380 SIIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVETPHEVMLTIDA 439

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 440 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 499

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 500 PFKADDFIEALFARED 515


>gi|332996587|gb|EGK16212.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           K-272]
 gi|333012995|gb|EGK32371.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           K-227]
          Length = 497

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 183 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 242

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 243 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGV 301

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 302 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 422 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 481

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 482 PFKADDFIEALFARED 497


>gi|332996251|gb|EGK15878.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           VA-6]
          Length = 498

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|83718719|ref|YP_441024.1| signal recognition particle-docking protein FtsY [Burkholderia
           thailandensis E264]
 gi|257140323|ref|ZP_05588585.1| signal recognition particle-docking protein FtsY [Burkholderia
           thailandensis E264]
 gi|83652544|gb|ABC36607.1| signal recognition particle-docking protein FtsY [Burkholderia
           thailandensis E264]
          Length = 433

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 183/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD GV   + ++  
Sbjct: 136 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGVDATEHLLGA 191

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K     ++  + + D +  L+ ++L PL +      +  P V+++ GVNG GKTT I
Sbjct: 192 LREKVRTGRLTDPQQVKDALRGLLVELLTPLEQSLVLGRAQ-PLVMMIAGVNGAGKTTSI 250

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 251 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 309

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 310 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 369

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++F+ 
Sbjct: 370 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFAD 429

Query: 309 VITG 312
            + G
Sbjct: 430 ALLG 433


>gi|327395607|dbj|BAK13029.1| cell division protein FtsY [Pantoea ananatis AJ13355]
          Length = 587

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 194/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +++++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 273 VTHEQDRPTKEGFFARLKRSLVKTRQNLGSGFIGLFRGKKIDDELFEELEEQLLIADVGV 332

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              ++I+  L      K +     LY + +  +  +L  + +P N +    P VIL+VGV
Sbjct: 333 ETTRRIITSLTQHADRKQLRDAEALYGLLKTEMADILAKVEEPLNVE-GKTPFVILMVGV 391

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A
Sbjct: 392 NGVGKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNISVVAQHTGADSA 451

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+++ VDVLI DTAGRL N S LM  + K+ RV+K+LD  APH V+  +DA
Sbjct: 452 SVIFDAIQAAKSRGVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDEQAPHEVMLTIDA 511

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL 
Sbjct: 512 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLR 571

Query: 300 PFVAKDFSAVITGCLD 315
           PF A+DF   +    D
Sbjct: 572 PFKAEDFIEALFARED 587


>gi|303247153|ref|ZP_07333428.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           fructosovorans JJ]
 gi|302491579|gb|EFL51464.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           fructosovorans JJ]
          Length = 538

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 124/314 (39%), Positives = 192/314 (61%), Gaps = 5/314 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59
           +  +    E      KL++G A T  ++ + I  ++ S   +D+   EELE++LI +D+G
Sbjct: 226 LDLEDEEDERNRLFLKLSEGLAKTKDQIVKRIDGLLGSHTVIDEAFWEELEEILIMADVG 285

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHVILVVG 118
              A K+++ L  K   +  +   V  D   ++ + L  + +P       + P V++++G
Sbjct: 286 YEPAAKLMDNLREKVRKRGTTDPAVFKD---ILREELAEIFRPQKTIKAINPPEVVMMIG 342

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT I KL+ +    G KV++AAGDTFR+AAI+QLKIWADR  A F      +D 
Sbjct: 343 VNGVGKTTTIAKLAHRDIMRGKKVLIAAGDTFRAAAIEQLKIWADRVGASFYTKGENADP 402

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+A+EA  +A  +  DVL +DTAGRLH  + LM  + K+ RV+ +    APH  + VLD
Sbjct: 403 AAVAFEAMDKALTEGFDVLYLDTAGRLHTKTNLMEELRKIRRVVAKKHTGAPHRSVLVLD 462

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q ++F+  AG   +I+TK+DGTA+GG ++ I ++  +P+ ++G+GE + DL
Sbjct: 463 ATTGQNALSQTKLFNEAAGVDEIILTKLDGTAKGGVVVGIALSFGVPITYVGLGEKMEDL 522

Query: 299 EPFVAKDFSAVITG 312
            PFV +DF+  + G
Sbjct: 523 RPFVGQDFAQALLG 536


>gi|323944312|gb|EGB40387.1| signal recognition particle-docking protein FtsY [Escherichia coli
           H120]
          Length = 515

 Score =  309 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 201 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 260

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 261 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 319

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 320 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 379

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 380 SVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 439

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 440 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 499

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 500 PFKADDFIEALFARED 515


>gi|281602812|gb|ADA75796.1| Cell division membrane protein [Shigella flexneri 2002017]
 gi|332749436|gb|EGJ79853.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           K-671]
          Length = 498

 Score =  309 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|166711627|ref|ZP_02242834.1| cell division protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 553

 Score =  309 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 122/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  LI +D+G+     ++E
Sbjct: 250 KPGWRERLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALIE 303

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  +++ +  Q +   +   +  +L P+SKP   D + +P V+L VGVNGVGKTT 
Sbjct: 304 GLRKRMKSREFIDAQAMFKALRADLIALLQPVSKPLVIDRARKPFVVLTVGVNGVGKTTT 363

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W DR     +     +DAA++A++A +
Sbjct: 364 IGKLAKRFKDEGNSLMLAAGDTFRAAAVAQLQAWGDRNGVAVIAQGQNADAASVAFDALQ 423

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DVLI DTAGRLH  + LM  +GK+ RVL ++D  APH VL V+D TTGQNA+ 
Sbjct: 424 AAKARGTDVLIADTAGRLHTQTGLMNELGKIRRVLGKIDAAAPHEVLMVIDGTTGQNAIS 483

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F    F 
Sbjct: 484 QLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFNIPIRFAGIGERPEDLRVFDPVAFV 543

Query: 308 AVIT 311
             + 
Sbjct: 544 DALL 547


>gi|331674949|ref|ZP_08375706.1| cell division protein FtsY [Escherichia coli TA280]
 gi|331067858|gb|EGI39256.1| cell division protein FtsY [Escherichia coli TA280]
          Length = 527

 Score =  309 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 124/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 213 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 272

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGV
Sbjct: 273 ETTRKIITNLTEGASRKQLRDAEALYGLLKDEMGEILAKVDEPLNVE-GKTPFVILMVGV 331

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 332 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 391

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 392 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 451

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 452 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 511

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 512 PFKADDFIEALFARED 527


>gi|283787901|ref|YP_003367766.1| cell division protein [Citrobacter rodentium ICC168]
 gi|282951355|emb|CBG91054.1| cell division protein [Citrobacter rodentium ICC168]
          Length = 494

 Score =  309 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 191/316 (60%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++          +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 180 IAQEQEKPTKEGLFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 239

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + + + ++L  + +P N D    P VIL+VGV
Sbjct: 240 ETTRKIIANLTEGASRKQLRDAEALYGLLKDEMSEILAKVDEPLNVD-GKTPFVILMVGV 298

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 299 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 358

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 359 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEVMLTIDA 418

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q  +FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 419 STGQNAVSQARLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 478

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 479 PFKADDFIEALFARED 494


>gi|225180936|ref|ZP_03734384.1| signal recognition particle-docking protein FtsY [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168417|gb|EEG77220.1| signal recognition particle-docking protein FtsY [Dethiobacter
           alkaliphilus AHT 1]
          Length = 310

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 126/302 (41%), Positives = 186/302 (61%), Gaps = 2/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +    ++ +G   T   +   +  + +    DD   EELE++LI +D+GV    +I + L
Sbjct: 1   MGIFSRIKEGLKKTRSGIMGRMEGLFARSSFDDEFYEELEEVLIGADVGVETTMQITDSL 60

Query: 71  LTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K R  K    Q+V+  +  L+  +L     P       +P VILV+GVNGVGKTT IG
Sbjct: 61  REKVREEKAREPQQVMDILKGLLLDILGRDVVPLELS-EQKPTVILVLGVNGVGKTTTIG 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +  + G KV+LAAGDTFR+AAI+QL+IWA R  +D +  + GSD +A+ ++    A
Sbjct: 120 KLAHRYKNEGKKVLLAAGDTFRAAAIEQLEIWAGRAQSDIIKHQQGSDPSAVLFDGVTAA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            ++  DV++ DTAGRLHN + LM  + K+ RV+++  P APH VL VLDATTGQNAL Q 
Sbjct: 180 VSRGSDVVLCDTAGRLHNKANLMEELKKVRRVVEKALPGAPHEVLLVLDATTGQNALAQA 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F+  A  TG+ +TK+DGTA+GG +I I    K+PV  +GVGEG+ DL+PF   ++   
Sbjct: 240 KVFNEAAPITGVALTKLDGTAKGGIVIAIANELKVPVKMVGVGEGVEDLQPFDPIEYVDG 299

Query: 310 IT 311
           + 
Sbjct: 300 LF 301


>gi|315295966|gb|EFU55275.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 16-3]
          Length = 498

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|238899311|ref|YP_002924994.1| cell division protein: membrane binding (N-terminal); GTPase domain
           (C-terminal) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229467072|gb|ACQ68846.1| cell division protein: membrane binding (N-terminal); GTPase domain
           (C-terminal) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 375

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 189/308 (61%), Gaps = 2/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +   E   +  +L      T   L  G  ++   +++DD + EELE+ L+ +D+GV   Q
Sbjct: 62  QNPPEKAGFFTRLKNSLKKTKQYLGTGFIELFKGKKIDDDLFEELEEQLLMADVGVETTQ 121

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI++ L T    K +     LY  + E +  ++  + +P     +  P+VIL+VGVNGVG
Sbjct: 122 KIIDSLTTHSSKKQLKEASGLYVKLKEEMLSIISKVEQPLKVS-NKSPYVILMVGVNGVG 180

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ ++   GL V+LAAGDTFR+AA +QLKIW +R     V    G+D+A++ +
Sbjct: 181 KTTTIGKLAHQLRQQGLSVLLAAGDTFRAAATEQLKIWGERNQIPVVAQHDGADSASVIF 240

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV++ DTAGRL N + LM  + K++RV+K+     PH V+ VLDA+TGQ
Sbjct: 241 DAVQSAKARGIDVVLADTAGRLQNKTHLMEELKKIVRVMKKWGEEFPHEVMLVLDASTGQ 300

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++FH     TGL++TK+DG+A+GG +  I     IP+ ++GVGE I DL PF A
Sbjct: 301 NAINQTKLFHETVPLTGLVLTKLDGSAKGGIIFAIADQFGIPIRYIGVGEKIEDLRPFNA 360

Query: 304 KDFSAVIT 311
            DF   + 
Sbjct: 361 GDFIEALF 368


>gi|332345419|gb|AEE58753.1| signal recognition particle-docking protein FtsY [Escherichia coli
           UMNK88]
          Length = 498

 Score =  308 bits (790), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|197287408|ref|YP_002153280.1| cell division protein [Proteus mirabilis HI4320]
 gi|194684895|emb|CAR47054.1| cell division protein [Proteus mirabilis HI4320]
          Length = 612

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 133/309 (43%), Positives = 192/309 (62%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++   +   +  +L KG   T   L  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 301 EQERPKKEGFFSRLKKGLLKTRQNLGSGFMGLFRGKKIDDELFEELEEQLLIADVGMDTT 360

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L      KD+     LY  + E +  +L  + KP N +   +P VIL+VGVNGV
Sbjct: 361 SKIINSLTQHASRKDLKDAESLYGKLREEMGDILNKVDKPLNIE-GKKPFVILMVGVNGV 419

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     +    G+D A++ 
Sbjct: 420 GKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADPASVI 479

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + AQAK VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+TG
Sbjct: 480 FDAIQSAQAKGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTLDASTG 539

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TGL +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 540 QNAVSQAKLFNETVGLTGLTLTKLDGTAKGGVIFSIADQFGIPIRYIGVGEGIEDLRPFK 599

Query: 303 AKDFSAVIT 311
           A DF   + 
Sbjct: 600 ADDFIEALF 608


>gi|331665073|ref|ZP_08365974.1| cell division protein FtsY [Escherichia coli TA143]
 gi|331057583|gb|EGI29569.1| cell division protein FtsY [Escherichia coli TA143]
          Length = 498

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|289668668|ref|ZP_06489743.1| cell division protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 551

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 124/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  LI +D+G+     ++E
Sbjct: 248 KTGWRERLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALIE 301

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  +++ V  Q +   +   +  +L P+SKP   D S +P V+L VGVNGVGKTT 
Sbjct: 302 GLRKRMKSREFVDAQAMFKALRADLIALLQPVSKPLVIDRSVKPFVVLTVGVNGVGKTTT 361

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W DR     +     +DAA++A++A +
Sbjct: 362 IGKLAKRFKDEGNSLMLAAGDTFRAAAVAQLQAWGDRNGVSVIAQGQNADAASVAFDALQ 421

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DVLI DTAGRLH  + LM  +GK+ RVL ++D  APH VL V+D TTGQNA+ 
Sbjct: 422 AAKARGTDVLIADTAGRLHTQTGLMNELGKIRRVLGKIDAAAPHEVLMVIDGTTGQNAIS 481

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F    F 
Sbjct: 482 QLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFNIPIRFAGIGERPEDLRVFDPVAFV 541

Query: 308 AVIT 311
             + 
Sbjct: 542 DALL 545


>gi|289661713|ref|ZP_06483294.1| cell division protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 551

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 124/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  LI +D+G+     ++E
Sbjct: 248 KTGWRERLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALIE 301

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  +++ V  Q +   +   +  +L P+SKP   D S +P V+L VGVNGVGKTT 
Sbjct: 302 GLRKRMKSREFVDAQAMFKALRADLIALLQPVSKPLVIDRSVKPFVVLTVGVNGVGKTTT 361

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W DR     +     +DAA++A++A +
Sbjct: 362 IGKLAKRFKDEGNSLMLAAGDTFRAAAVAQLQAWGDRNGVSVIAQGQNADAASVAFDALQ 421

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DVLI DTAGRLH  + LM  +GK+ RVL ++D  APH VL V+D TTGQNA+ 
Sbjct: 422 AAKARGTDVLIADTAGRLHTQTGLMNELGKIRRVLGKIDAAAPHEVLMVIDGTTGQNAIS 481

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F    F 
Sbjct: 482 QLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFNIPIRFAGIGERPEDLRVFDPVAFV 541

Query: 308 AVIT 311
             + 
Sbjct: 542 DALL 545


>gi|163803406|ref|ZP_02197281.1| cell division protein FtsY [Vibrio sp. AND4]
 gi|159172810|gb|EDP57655.1| cell division protein FtsY [Vibrio sp. AND4]
          Length = 410

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 200/309 (64%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 98  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMETT 157

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY  + E + ++L  + +P   D S  P+VIL+VGVNGV
Sbjct: 158 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILAKVEQPLEIDSSKTPYVILMVGVNGV 217

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+  + G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 218 GKTTTIGKLAKQFQNQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 277

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 278 FDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 337

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PF 
Sbjct: 338 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIDDLRPFE 397

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 398 TQEFIDALF 406


>gi|161505886|ref|YP_001572998.1| cell division protein FtsY [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867233|gb|ABX23856.1| hypothetical protein SARI_04065 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 497

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 124/316 (39%), Positives = 192/316 (60%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 183 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 242

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + + + ++L  + +P   +    P VIL+VGV
Sbjct: 243 ETTRKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLTIE-GKTPFVILMVGV 301

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 302 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 362 SVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDA 421

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 422 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 481

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 482 PFKADDFIEALFARED 497


>gi|30249386|ref|NP_841456.1| Signal recognition particle GTPase, FtsY protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138749|emb|CAD85326.1| Signal recognition particle GTPase, FtsY protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 345

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 125/318 (39%), Positives = 190/318 (59%), Gaps = 9/318 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  +V +  +S+  K+ +G   T  +L + ++ +   R++D+ + EELE  L+ +D G+ 
Sbjct: 28  NPAQVETRPVSFTDKIRQGLTRTRQQLGKQLSGLFGGRKIDEDLYEELETALLTADTGIE 87

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              +++E L T+     +     L  V  +++ ++L PL +P      H P VI++ GVN
Sbjct: 88  ATNRLLESLRTRVRRDALDDSEQLKTVLQDVLTELLQPLERPLVT-TGHTPFVIMIAGVN 146

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG----S 176
           GVGKTT IGKL+      G  V+LAAGDTFR+AA +QLK+W +R     +  E      S
Sbjct: 147 GVGKTTTIGKLAHYFQSQGHSVLLAAGDTFRAAAQEQLKVWGERNQITVISQESDPGKKS 206

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A   A A+K+D+++ DTAGRL     LM  I K+ RV+ +  P APH VL V
Sbjct: 207 DPAAVIFDAINAAIARKIDIVLADTAGRLTTQLHLMEEIRKIKRVIAKAIPDAPHEVLLV 266

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT-HKIP--VYFLGVGE 293
           LDA TGQNA+ Q++ F+   G TGL+MTK+DGTARGG +  I       P  + F+GVGE
Sbjct: 267 LDANTGQNAVSQLKAFNDALGVTGLVMTKLDGTARGGVIAAIAAQFTDTPPALRFIGVGE 326

Query: 294 GINDLEPFVAKDFSAVIT 311
           G++DL PF A++F+  + 
Sbjct: 327 GLDDLRPFNAREFAEALF 344


>gi|84624642|ref|YP_452014.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84368582|dbj|BAE69740.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 601

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  LI +D+G+     ++E
Sbjct: 298 KPGWRERLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALIE 351

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  +++ V  Q +   +   +  +L P+SKP   D + +P V+L VGVNGVGKTT 
Sbjct: 352 GLRKRMKSREFVDAQAMFKALRADLIALLQPVSKPLVIDRARKPFVVLTVGVNGVGKTTT 411

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W DR     +     +DAA++A++A +
Sbjct: 412 IGKLAKRFKDEGNSLMLAAGDTFRAAAVAQLQAWGDRNGVAVIAQGQNADAASVAFDALQ 471

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DVLI DTAGRLH  + LM  +GK+ RVL ++D  APH VL V+D TTGQNA+ 
Sbjct: 472 AAKARGTDVLIADTAGRLHTQTGLMNELGKIRRVLGKIDAAAPHEVLMVIDGTTGQNAIS 531

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F    F 
Sbjct: 532 QLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFNIPIRFAGIGERPEDLRVFDPVAFV 591

Query: 308 AVIT 311
             + 
Sbjct: 592 DALL 595


>gi|58582766|ref|YP_201782.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427360|gb|AAW76397.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 601

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  LI +D+G+     ++E
Sbjct: 298 KPGWRERLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALIE 351

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  +++ V  Q +   +   +  +L P+SKP   D + +P V+L VGVNGVGKTT 
Sbjct: 352 GLRKRMKSREFVDAQAMFKALRADLIALLQPVSKPLVIDRARKPFVVLTVGVNGVGKTTT 411

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W DR     +     +DAA++A++A +
Sbjct: 412 IGKLAKRFKDEGNSLMLAAGDTFRAAAVAQLQAWGDRNGVAVIAQGQNADAASVAFDALQ 471

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DVLI DTAGRLH  + LM  +GK+ RVL ++D  APH VL V+D TTGQNA+ 
Sbjct: 472 AAKARGTDVLIADTAGRLHTQTGLMNELGKIRRVLGKIDAAAPHEVLMVIDGTTGQNAIS 531

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F    F 
Sbjct: 532 QLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFNIPIRFAGIGERPEDLRVFDPVAFV 591

Query: 308 AVIT 311
             + 
Sbjct: 592 DALL 595


>gi|149186850|ref|ZP_01865160.1| signal recognition particle GTPase [Erythrobacter sp. SD-21]
 gi|148829517|gb|EDL47958.1| signal recognition particle GTPase [Erythrobacter sp. SD-21]
          Length = 307

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 138/304 (45%), Positives = 190/304 (62%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SW  +L  GF  TS +L E + + ++  +LDD   +++ED LI SD+G + A +I E 
Sbjct: 3   KPSWTERLFGGFKKTSERLSENLAEAVTKAKLDDATLDDVEDALIMSDLGPSAAARIRER 62

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  KR+  ++S   +   V+E I  +L P++KP       RP V+LV+GVNG GKTT I 
Sbjct: 63  LKEKRFGLEISADELKEAVAEEIAAILRPVAKPLEITAFPRPQVLLVIGVNGSGKTTTIA 122

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+    +    VMLAAGDTFR+AAI QL+ WADR     V    G D A++ ++A ++ 
Sbjct: 123 KLAHLFVEDDYNVMLAAGDTFRAAAIGQLQTWADRVGVPIVRGPEGGDPASIVFDAVRKG 182

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DVLI+DTAGRL N   LM  + K+ +VL RL+P APH V+ VLDAT GQNAL Q+
Sbjct: 183 TEIGTDVLIVDTAGRLQNKRELMDELAKIRKVLGRLNPEAPHDVVLVLDATNGQNALSQI 242

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F  VAG TGL+MTK+DGTARGG L+     + +P++ +GVGE I+DL PF     + V
Sbjct: 243 DVFKEVAGVTGLVMTKLDGTARGGVLVQAAKKYGLPIHAIGVGEKIDDLRPFDPDLVARV 302

Query: 310 ITGC 313
           I G 
Sbjct: 303 IAGI 306


>gi|56964061|ref|YP_175792.1| signal recognition particle GTPase [Bacillus clausii KSM-K16]
 gi|56910304|dbj|BAD64831.1| signal recognition particle GTPase [Bacillus clausii KSM-K16]
          Length = 327

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 128/306 (41%), Positives = 186/306 (60%), Gaps = 2/306 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K+A ++     K   G   T       I ++++  R++D+   E+LE++LI +D+GV+ 
Sbjct: 9   EKMAQQTNEVADKFKHGLEKTRTSFSGKINELVARYRKIDEDFFEDLEEILIGADVGVST 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             ++V+EL  +   +++     +  V SE +  +L    K           VILVVGVNG
Sbjct: 69  VMELVDELKEEVRLRNLKDTEEIQPVISEKLASLLEKDDKDTTLQLQEGLSVILVVGVNG 128

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+  +   G  V+LAAGDTFR+ AIDQL +W +R     +  + GSD AA+
Sbjct: 129 VGKTTSIGKLAHYLKGQGKSVVLAAGDTFRAGAIDQLDVWGERVGVPVIKQQEGSDPAAV 188

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A   A+++K DVLI DTAGRL N   LM  + K+ RV++R  P APH VL V+DATT
Sbjct: 189 MYDAIAWARSRKADVLICDTAGRLQNKVNLMNELAKVKRVIEREVPGAPHEVLLVVDATT 248

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + F A    +GL++TK+DGTA+GG +I I     +PV F+G+GE  +DL+PF
Sbjct: 249 GQNALSQAKAFAASTDVSGLVLTKLDGTAKGGIVIAIRQELDLPVKFIGLGEQKDDLQPF 308

Query: 302 VAKDFS 307
            A+ F 
Sbjct: 309 DAEQFV 314


>gi|301329789|ref|ZP_07222524.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 78-1]
 gi|300844138|gb|EFK71898.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 78-1]
          Length = 497

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 194/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 183 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 242

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  +++P N +    P VIL+VGV
Sbjct: 243 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVNEPLNVE-GKTPFVILMVGV 301

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 302 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 422 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 481

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 482 PFKADDFIEALFARED 497


>gi|331685110|ref|ZP_08385696.1| cell division protein FtsY [Escherichia coli H299]
 gi|331077481|gb|EGI48693.1| cell division protein FtsY [Escherichia coli H299]
          Length = 498

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|87199421|ref|YP_496678.1| signal recognition particle-docking protein FtsY [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135102|gb|ABD25844.1| signal recognition particle-docking protein FtsY [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 308

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 145/301 (48%), Positives = 188/301 (62%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  ++  GF  TS +L E +  I+ S RL +   ++LED LI SD+G   A +I E L 
Sbjct: 5   SWSDRILGGFRKTSERLAENLGGIVGSSRLTEAQLDDLEDALILSDLGPRAAARIRERLK 64

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             R+   V  Q +   V+E I  +L P++KP       RP VILV+GVNG GKTT I KL
Sbjct: 65  GARFENGVDEQGLKEAVAEEIAAILRPVAKPLEIVAFPRPQVILVIGVNGSGKTTTIAKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +    +    VMLAAGDTFR+AAI QLK+WADR     V    G D A++ ++A K A  
Sbjct: 125 AHLFQEQDYGVMLAAGDTFRAAAIGQLKVWADRLGVPIVTGPEGGDPASIVFDAVKAATD 184

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +D LI+DTAGRL N   LM  + K+ RVL RL+P APH V+ VLDAT GQNAL+Q+E+
Sbjct: 185 TGIDTLIVDTAGRLQNKRELMDELAKVRRVLGRLNPAAPHDVVLVLDATNGQNALQQIEI 244

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG TGLIMTK+DGTARGG L+     + +P++ +GVGE I+DL PF     + VI 
Sbjct: 245 FKEVAGVTGLIMTKLDGTARGGVLVAAAEQYGLPIHAIGVGEKIDDLRPFDPDLVAKVIA 304

Query: 312 G 312
           G
Sbjct: 305 G 305


>gi|301018551|ref|ZP_07182929.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 69-1]
 gi|300399670|gb|EFJ83208.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 69-1]
          Length = 498

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|78048306|ref|YP_364481.1| cell division protein FtsY [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036736|emb|CAJ24429.1| cell division protein FtsY [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 551

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  LI +D+G+     +++
Sbjct: 248 KPGWRERLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALID 301

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  +++ V  Q +   +   +  +L P+SKP   D S +P V+L VGVNGVGKTT 
Sbjct: 302 GLRKRMKSREFVDAQALFKALRADLIALLQPVSKPLVIDRSLKPFVVLTVGVNGVGKTTT 361

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W DR     +     +DAA++A++A +
Sbjct: 362 IGKLAKRFKDEGNSLMLAAGDTFRAAAVAQLQAWGDRNGVAVIAQGQNADAASVAFDALQ 421

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DVLI DTAGRLH  + LM  +GK+ RVL ++D  APH VL V+D TTGQNA+ 
Sbjct: 422 AAKARGTDVLIADTAGRLHTQTGLMNELGKIRRVLGKIDAAAPHEVLMVIDGTTGQNAIS 481

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F    F 
Sbjct: 482 QLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFNIPIRFAGIGERPEDLRVFDPVAFV 541

Query: 308 AVIT 311
             + 
Sbjct: 542 DALL 545


>gi|218707058|ref|YP_002414577.1| cell division protein FtsY [Escherichia coli UMN026]
 gi|293407045|ref|ZP_06650969.1| cell division protein FtsY [Escherichia coli FVEC1412]
 gi|300898834|ref|ZP_07117138.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 198-1]
 gi|218434155|emb|CAR15072.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein ; conserved hypothetical protein [Escherichia
           coli UMN026]
 gi|284923454|emb|CBG36549.1| cell division protein [Escherichia coli 042]
 gi|291425856|gb|EFE98890.1| cell division protein FtsY [Escherichia coli FVEC1412]
 gi|300357519|gb|EFJ73389.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 198-1]
          Length = 498

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|323498060|ref|ZP_08103066.1| signal recognition particle-docking protein FtsY [Vibrio
           sinaloensis DSM 21326]
 gi|323316868|gb|EGA69873.1| signal recognition particle-docking protein FtsY [Vibrio
           sinaloensis DSM 21326]
          Length = 404

 Score =  308 bits (789), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 198/312 (63%), Gaps = 1/312 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  A T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 93  EQEKPTESFFARLKRSLARTKANIGAGFFGLFKGKQIDDDLFEELEEQLLIADVGMDTTL 152

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+E L  K   +++     LY  + E + ++L  + +P   D S  P+VIL+VGVNGVG
Sbjct: 153 KIIENLTEKASRQELKDGEALYGLLKEEMAEILSNVEQPLQVDTSKTPYVILMVGVNGVG 212

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ Y
Sbjct: 213 KTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNGVPVVAQHTGADSASVIY 272

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+AK VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 273 DAIESAKAKGVDVVIADTAGRLQNKANLMEELRKIVRVMKKVDDSAPHEIMLTLDAGTGQ 332

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PF  
Sbjct: 333 NAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFET 392

Query: 304 KDFSAVITGCLD 315
           ++F   +    D
Sbjct: 393 QEFIDALFSRED 404


>gi|312972271|ref|ZP_07786445.1| signal recognition particle-docking protein FtsY [Escherichia coli
           1827-70]
 gi|310334648|gb|EFQ00853.1| signal recognition particle-docking protein FtsY [Escherichia coli
           1827-70]
          Length = 458

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 144 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 203

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 204 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 262

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 263 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 322

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 323 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 382

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 383 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 442

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 443 PFKADDFIEALFARED 458


>gi|296386871|ref|ZP_06876370.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           PAb1]
          Length = 453

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 187/302 (61%), Gaps = 2/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEEL 70
            +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L
Sbjct: 146 GFFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL 205

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 206 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 265

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 266 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 325

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 326 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 385

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F   
Sbjct: 386 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQA 445

Query: 310 IT 311
           + 
Sbjct: 446 LF 447


>gi|15595570|ref|NP_249064.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           PAO1]
 gi|9946225|gb|AAG03762.1|AE004475_4 signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           PAO1]
          Length = 455

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 187/302 (61%), Gaps = 2/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEEL 70
            +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L
Sbjct: 148 GFFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL 207

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 208 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 267

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 268 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 327

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 328 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 387

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F   
Sbjct: 388 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQA 447

Query: 310 IT 311
           + 
Sbjct: 448 LF 449


>gi|116054103|ref|YP_788546.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115589324|gb|ABJ15339.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 451

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 187/302 (61%), Gaps = 2/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEEL 70
            +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L
Sbjct: 144 GFFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL 203

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 204 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 263

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 264 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 323

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 324 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 383

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F   
Sbjct: 384 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQA 443

Query: 310 IT 311
           + 
Sbjct: 444 LF 445


>gi|256025812|ref|ZP_05439677.1| cell division protein FtsY [Escherichia sp. 4_1_40B]
 gi|301645907|ref|ZP_07245821.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 146-1]
 gi|307140147|ref|ZP_07499503.1| cell division protein FtsY [Escherichia coli H736]
 gi|331644164|ref|ZP_08345293.1| cell division protein FtsY [Escherichia coli H736]
 gi|301075896|gb|EFK90702.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 146-1]
 gi|315614733|gb|EFU95373.1| signal recognition particle-docking protein FtsY [Escherichia coli
           3431]
 gi|331036458|gb|EGI08684.1| cell division protein FtsY [Escherichia coli H736]
          Length = 497

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 183 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 242

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 243 ETTRKIITNLTEGASRKQLRDAEALYGQLKEEMGEILAKVDEPLNVE-GKAPFVILMVGV 301

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 302 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 422 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 481

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 482 PFKADDFIEALFARED 497


>gi|156936373|ref|YP_001440289.1| cell division protein FtsY [Cronobacter sakazakii ATCC BAA-894]
 gi|156534627|gb|ABU79453.1| hypothetical protein ESA_04273 [Cronobacter sakazakii ATCC BAA-894]
          Length = 517

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 192/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 206 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVDTT 265

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 266 RKIIANLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGV 324

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 325 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 384

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD +APH V+  +DA+TG
Sbjct: 385 FDAIQAAKARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEVMLTIDASTG 444

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 445 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFN 504

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 505 AGDFIEALFARED 517


>gi|304440217|ref|ZP_07400107.1| cell division protein FtsY [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371266|gb|EFM24882.1| cell division protein FtsY [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 432

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 185/311 (59%), Gaps = 2/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S +    E + +  KL KG   T   +      II +  ++DD + E+LED+LI +D+G+
Sbjct: 121 SLENSEPEKIGFFAKLKKGLDKTRKDMSVKFNTIIGAYVKIDDEMLEDLEDILISADVGM 180

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               K+V+ L        V+   ++  + +     LM + K    +   +  +ILVVGVN
Sbjct: 181 ETTMKLVDNLRESIIENKVNDPNMVVPLLKEETLKLMDIDKSSELNLGDK-SIILVVGVN 239

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +    G  V++AAGDTFR+AAI+QLK W +R + D +    GSD AA
Sbjct: 240 GVGKTTTIGKLANRFRKEGKSVLVAAGDTFRAAAIEQLKEWGNRANIDVIHQNEGSDPAA 299

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+++ +DVLI DTAGRLHN   LM  + K+  V++   P A    L VLDAT
Sbjct: 300 VIFDAIEAAKSRNIDVLICDTAGRLHNKQNLMKELEKISNVIETKYPEATRETLLVLDAT 359

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q + F   A  TG+++TK+DGTA+GG ++ +     +P+  +GVGEGI+DL+ 
Sbjct: 360 TGQNAINQAKTFKEAANITGMVLTKLDGTAKGGVVLALQSELGVPIKLVGVGEGIDDLQN 419

Query: 301 FVAKDFSAVIT 311
           F +KDF   + 
Sbjct: 420 FNSKDFVEALF 430


>gi|238763644|ref|ZP_04624604.1| Cell division protein ftsY [Yersinia kristensenii ATCC 33638]
 gi|238698122|gb|EEP90879.1| Cell division protein ftsY [Yersinia kristensenii ATCC 33638]
          Length = 502

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 128/315 (40%), Positives = 193/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV 
Sbjct: 189 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFRGKKIDDDLFEELEEQLLIADVGVE 248

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +    + P VIL+VGVN
Sbjct: 249 TTRKIITSLTEHASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVSGKN-PFVILMVGVN 307

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A+
Sbjct: 308 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSAS 367

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 368 VIFDAIQAAKARGIDVLLADTAGRLQNKSHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 427

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL P
Sbjct: 428 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRP 487

Query: 301 FVAKDFSAVITGCLD 315
           F A DF   +    D
Sbjct: 488 FKADDFIEALFARED 502


>gi|74314064|ref|YP_312483.1| cell division protein FtsY [Shigella sonnei Ss046]
 gi|73857541|gb|AAZ90248.1| cell division membrane protein [Shigella sonnei Ss046]
          Length = 498

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|300917202|ref|ZP_07133884.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 115-1]
 gi|300415541|gb|EFJ98851.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 115-1]
          Length = 497

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 183 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 242

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 243 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 301

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 302 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 422 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 481

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 482 PFKADDFIEALFARED 497


>gi|239906646|ref|YP_002953387.1| cell division protein FtsY [Desulfovibrio magneticus RS-1]
 gi|239796512|dbj|BAH75501.1| cell division protein FtsY [Desulfovibrio magneticus RS-1]
          Length = 434

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 123/314 (39%), Positives = 190/314 (60%), Gaps = 5/314 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59
           +  +    E      KL++G A T  ++ + I  ++     +D+   EELE++LI +D+G
Sbjct: 122 LDLEDEEDERNRLFLKLSEGLAKTKEQIVKRIDGLLGRHAVIDEAFWEELEEILIMADVG 181

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
              A K+++ L  K   +  +   V  D + E + ++      P      + P V++++G
Sbjct: 182 FEPAAKLLDALRDKVRKRGTTDPAVFKDILREELAEI---FRTPKTIKAINPPEVVMMIG 238

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT I KL+ +    G KV++AAGDTFR+AAI+QL IWA R  ADF      +D 
Sbjct: 239 VNGVGKTTTIAKLAHRDMMRGKKVLIAAGDTFRAAAIEQLHIWAKRVGADFYSKGANADP 298

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+A+EA  +A A+  DV+ +DTAGRLH  + LM  + K+ RV+ +  P APH  + VLD
Sbjct: 299 AAVAFEAMDKALAEGYDVVYLDTAGRLHTKTNLMEELRKIHRVVGKKHPGAPHRSVLVLD 358

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL QV++F   AG   +I+TK+DGTA+GG ++ I ++  +P+ ++G+GE + DL
Sbjct: 359 ATTGQNALSQVKLFGEAAGVDEIILTKLDGTAKGGVVVGIALSFSVPITYVGLGEKMEDL 418

Query: 299 EPFVAKDFSAVITG 312
            PF  +DF+  + G
Sbjct: 419 RPFDGQDFAQALLG 432


>gi|26250079|ref|NP_756119.1| cell division protein FtsY [Escherichia coli CFT073]
 gi|227883610|ref|ZP_04001415.1| cell division protein FtsY [Escherichia coli 83972]
 gi|300985244|ref|ZP_07177341.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 45-1]
 gi|301050311|ref|ZP_07197200.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 185-1]
 gi|26110508|gb|AAN82693.1|AE016768_111 Cell division protein ftsY [Escherichia coli CFT073]
 gi|227839489|gb|EEJ49955.1| cell division protein FtsY [Escherichia coli 83972]
 gi|300297940|gb|EFJ54325.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 185-1]
 gi|300408115|gb|EFJ91653.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 45-1]
 gi|307555558|gb|ADN48333.1| cell division protein FtsY [Escherichia coli ABU 83972]
 gi|315291681|gb|EFU51037.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 153-1]
          Length = 498

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|191169497|ref|ZP_03031229.1| cell division protein FtsY [Escherichia coli B7A]
 gi|193061759|ref|ZP_03042856.1| cell division protein FtsY [Escherichia coli E22]
 gi|218556015|ref|YP_002388928.1| cell division protein FtsY [Escherichia coli IAI1]
 gi|256020812|ref|ZP_05434677.1| cell division protein FtsY [Shigella sp. D9]
 gi|260846248|ref|YP_003224026.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/hypothetical protein FtsY [Escherichia coli
           O103:H2 str. 12009]
 gi|300907385|ref|ZP_07125033.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 84-1]
 gi|300926838|ref|ZP_07142606.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 182-1]
 gi|301305997|ref|ZP_07212078.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 124-1]
 gi|307311869|ref|ZP_07591507.1| signal recognition particle-docking protein FtsY [Escherichia coli
           W]
 gi|332282019|ref|ZP_08394432.1| cell division protein ftsY [Shigella sp. D9]
 gi|190900458|gb|EDV60275.1| cell division protein FtsY [Escherichia coli B7A]
 gi|192932549|gb|EDV85146.1| cell division protein FtsY [Escherichia coli E22]
 gi|218362783|emb|CAR00409.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein ; conserved hypothetical protein [Escherichia
           coli IAI1]
 gi|257761395|dbj|BAI32892.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein FtsY [Escherichia coli O103:H2
           str. 12009]
 gi|300400894|gb|EFJ84432.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 84-1]
 gi|300417188|gb|EFK00499.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 182-1]
 gi|300838780|gb|EFK66540.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 124-1]
 gi|306908013|gb|EFN38513.1| signal recognition particle-docking protein FtsY [Escherichia coli
           W]
 gi|315062743|gb|ADT77070.1| fused signal recognition particle (SRP) receptor: membrane binding
           protein/conserved protein [Escherichia coli W]
 gi|315256062|gb|EFU36030.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 85-1]
 gi|320199641|gb|EFW74231.1| cell division protein FtsY [Escherichia coli EC4100B]
 gi|323376669|gb|ADX48937.1| signal recognition particle-docking protein FtsY [Escherichia coli
           KO11]
 gi|332104371|gb|EGJ07717.1| cell division protein ftsY [Shigella sp. D9]
          Length = 497

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 183 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 242

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 243 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 301

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 302 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 422 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 481

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 482 PFKADDFIEALFARED 497


>gi|215488739|ref|YP_002331170.1| cell division protein FtsY [Escherichia coli O127:H6 str. E2348/69]
 gi|218691749|ref|YP_002399961.1| cell division protein FtsY [Escherichia coli ED1a]
 gi|312968224|ref|ZP_07782434.1| signal recognition particle-docking protein FtsY [Escherichia coli
           2362-75]
 gi|215266811|emb|CAS11252.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218429313|emb|CAR10272.2| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein ; conserved hypothetical protein [Escherichia
           coli ED1a]
 gi|222035170|emb|CAP77915.1| Cell division protein ftsY [Escherichia coli LF82]
 gi|312287049|gb|EFR14959.1| signal recognition particle-docking protein FtsY [Escherichia coli
           2362-75]
 gi|312948017|gb|ADR28844.1| cell division protein FtsY [Escherichia coli O83:H1 str. NRG 857C]
          Length = 498

 Score =  307 bits (788), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|193068822|ref|ZP_03049782.1| cell division protein FtsY [Escherichia coli E110019]
 gi|260857570|ref|YP_003231461.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein FtsY [Escherichia coli O26:H11
           str. 11368]
 gi|260870189|ref|YP_003236591.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/hypothetical protein FtsY [Escherichia coli
           O111:H- str. 11128]
 gi|192957898|gb|EDV88341.1| cell division protein FtsY [Escherichia coli E110019]
 gi|257756219|dbj|BAI27721.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein FtsY [Escherichia coli O26:H11
           str. 11368]
 gi|257766545|dbj|BAI38040.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein FtsY [Escherichia coli O111:H-
           str. 11128]
 gi|323179009|gb|EFZ64583.1| signal recognition particle-docking protein FtsY [Escherichia coli
           1180]
          Length = 498

 Score =  307 bits (788), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|254038632|ref|ZP_04872688.1| cell division protein FtsY [Escherichia sp. 1_1_43]
 gi|226839138|gb|EEH71161.1| cell division protein FtsY [Escherichia sp. 1_1_43]
 gi|309703870|emb|CBJ03211.1| cell division protein [Escherichia coli ETEC H10407]
          Length = 498

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|331659760|ref|ZP_08360698.1| cell division protein FtsY [Escherichia coli TA206]
 gi|331052975|gb|EGI25008.1| cell division protein FtsY [Escherichia coli TA206]
          Length = 498

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNIE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|170718906|ref|YP_001784077.1| signal recognition particle-docking protein FtsY [Haemophilus
           somnus 2336]
 gi|168827035|gb|ACA32406.1| signal recognition particle-docking protein FtsY [Haemophilus
           somnus 2336]
          Length = 447

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 191/312 (61%), Gaps = 1/312 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +  ++       +  +L KG   T   +  G   +   +++DD + EELE+ L+ +DIGV
Sbjct: 132 IPQEQEKPAENGFFSRLVKGLLKTKQNIGIGFRSLFLGKKIDDELFEELEEQLLIADIGV 191

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               KI+  L+     K +    +LY  +   +  +L P+ +P   D S +P+VIL+VGV
Sbjct: 192 PTTTKIINNLIQHASRKQLQEADLLYQQLKVELADILKPVEQPLQLDNSKKPYVILMVGV 251

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G  VMLAAGDTFR+AA++QL++W +R     +    GSD+A
Sbjct: 252 NGVGKTTTIGKLANQFQRQGKSVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQSTGSDSA 311

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A A+ +DVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LD+
Sbjct: 312 SVIFDAMQSAAARNIDVLIADTAGRLQNKNNLMDELKKIVRVIKKCDETAPHEIMLTLDS 371

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I+DL 
Sbjct: 372 GTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIDDLR 431

Query: 300 PFVAKDFSAVIT 311
           PF A +F   + 
Sbjct: 432 PFQADEFIDALF 443


>gi|157162941|ref|YP_001460259.1| cell division protein FtsY [Escherichia coli HS]
 gi|170018304|ref|YP_001723258.1| cell division protein FtsY [Escherichia coli ATCC 8739]
 gi|157068621|gb|ABV07876.1| cell division protein FtsY [Escherichia coli HS]
 gi|169753232|gb|ACA75931.1| signal recognition particle-docking protein FtsY [Escherichia coli
           ATCC 8739]
 gi|323939318|gb|EGB35529.1| signal recognition particle-docking protein FtsY [Escherichia coli
           E482]
          Length = 498

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|291284804|ref|YP_003501622.1| Cell division protein FtsY [Escherichia coli O55:H7 str. CB9615]
 gi|290764677|gb|ADD58638.1| Cell division protein FtsY [Escherichia coli O55:H7 str. CB9615]
          Length = 498

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + +ML  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEMLAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|15603384|ref|NP_246458.1| hypothetical protein PM1519 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721906|gb|AAK03603.1| FtsY [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 459

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 128/311 (41%), Positives = 193/311 (62%), Gaps = 1/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             ++       +  +L KG   T   L  G       +++DD + EELE+ L+ +D+GV 
Sbjct: 139 PQEQEKKSEGGFFSRLVKGLLKTKQNLGAGFRSFFFGKKIDDALFEELEEQLLIADLGVP 198

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            A KI+  L      + +    +LY  +   + ++L P+++P   D S +P+VIL+VGVN
Sbjct: 199 TATKIINNLTQHASHQQLKEADLLYQQLKVEMAEILKPVAQPLVIDQSKKPYVILMVGVN 258

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++  + G  VMLAAGDTFR+AA++QL++W +R S   V    GSD+A+
Sbjct: 259 GVGKTTTIGKLARQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNSIPVVAQSTGSDSAS 318

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A A+ VDVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA 
Sbjct: 319 VIFDAMQSAAARHVDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAG 378

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL P
Sbjct: 379 TGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLRP 438

Query: 301 FVAKDFSAVIT 311
           F A +F   + 
Sbjct: 439 FNADEFIDALF 449


>gi|53718154|ref|YP_107140.1| putative cell division protein [Burkholderia pseudomallei K96243]
 gi|126441269|ref|YP_001057615.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 668]
 gi|254181872|ref|ZP_04888469.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1655]
 gi|52208568|emb|CAH34504.1| putative cell division protein [Burkholderia pseudomallei K96243]
 gi|126220762|gb|ABN84268.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 668]
 gi|184212410|gb|EDU09453.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1655]
          Length = 439

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 184/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  
Sbjct: 142 KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGA 197

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 198 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 256

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 257 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 315

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 316 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 375

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 376 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 435

Query: 309 VITG 312
            + G
Sbjct: 436 ALLG 439


>gi|168260700|ref|ZP_02682673.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168465148|ref|ZP_02699040.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195632106|gb|EDX50590.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205350194|gb|EDZ36825.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 491

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|204928517|ref|ZP_03219716.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321950|gb|EDZ07148.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 491

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|330505416|ref|YP_004382285.1| signal recognition particle-docking protein FtsY [Pseudomonas
           mendocina NK-01]
 gi|328919702|gb|AEB60533.1| signal recognition particle-docking protein FtsY [Pseudomonas
           mendocina NK-01]
          Length = 443

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 128/306 (41%), Positives = 196/306 (64%), Gaps = 2/306 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKI 66
            +   +  +L +G + TS  L EG+  +   ++ +DD + ++LE  L+ +D+GV     I
Sbjct: 132 QDKPGFFARLKQGLSKTSASLGEGMASLFLGKKAIDDDLLDDLETRLLTADVGVEATTTI 191

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +  L  +   K+++    LY  + E +  +L P+ +P   D + +P+VILVVGVNGVGKT
Sbjct: 192 IGNLTKRVARKELADSGALYKALQEELVTLLKPVEQPLLIDSAKQPYVILVVGVNGVGKT 251

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ ++A
Sbjct: 252 TTIGKLAKKLQQDGKKVMLAAGDTFRAAAVEQLQVWGERNNIAVIAQHTGADSASVIFDA 311

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+++ VDVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA
Sbjct: 312 VQAAKSRGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNA 371

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL PF A+ 
Sbjct: 372 ISQAKQFNQTVNLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRPFEAQA 431

Query: 306 FSAVIT 311
           F   + 
Sbjct: 432 FVQALF 437


>gi|194442699|ref|YP_002042816.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194401362|gb|ACF61584.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 491

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|168232718|ref|ZP_02657776.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194470486|ref|ZP_03076470.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194456850|gb|EDX45689.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205333169|gb|EDZ19933.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 491

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|16762733|ref|NP_458350.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144220|ref|NP_807562.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213053204|ref|ZP_03346082.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213426831|ref|ZP_03359581.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213585937|ref|ZP_03367763.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213650000|ref|ZP_03380053.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213859529|ref|ZP_03385233.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289829448|ref|ZP_06547060.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25300177|pir||AG0991 cell division protein [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16505039|emb|CAD08059.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139857|gb|AAO71422.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 491

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|323164793|gb|EFZ50585.1| signal recognition particle-docking protein FtsY [Shigella sonnei
           53G]
          Length = 454

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 140 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 199

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 200 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 258

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 259 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 318

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 319 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 378

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 379 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 438

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 439 PFKADDFIEALFARED 454


>gi|306816192|ref|ZP_07450330.1| cell division protein FtsY [Escherichia coli NC101]
 gi|305850588|gb|EFM51045.1| cell division protein FtsY [Escherichia coli NC101]
          Length = 498

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|16766857|ref|NP_462472.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161616619|ref|YP_001590584.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167990787|ref|ZP_02571886.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|197264581|ref|ZP_03164655.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|200388762|ref|ZP_03215374.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|16422131|gb|AAL22431.1| GTPase domain of cell division membrane protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|161365983|gb|ABX69751.1| hypothetical protein SPAB_04436 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197242836|gb|EDY25456.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|199605860|gb|EDZ04405.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205330664|gb|EDZ17428.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261248724|emb|CBG26562.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995802|gb|ACY90687.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160110|emb|CBW19630.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914594|dbj|BAJ38568.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321226620|gb|EFX51670.1| Signal recognition particle receptor protein FtsY [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323131930|gb|ADX19360.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332990422|gb|AEF09405.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 491

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|209920923|ref|YP_002295007.1| cell division protein FtsY [Escherichia coli SE11]
 gi|209914182|dbj|BAG79256.1| ABC transporter permease component [Escherichia coli SE11]
 gi|324018641|gb|EGB87860.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 117-3]
          Length = 498

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|16131336|ref|NP_417921.1| Signal Recognition Particle (SRP) receptor [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89110548|ref|AP_004328.1| fused Signal Recognition Particle (SRP) receptor [Escherichia coli
           str. K-12 substr. W3110]
 gi|170082978|ref|YP_001732298.1| fused Signal recognition particle (SRP) receptor: membrane binding
           protein; protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238902555|ref|YP_002928351.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/hypothetical protein [Escherichia coli BW2952]
 gi|253771707|ref|YP_003034538.1| cell division protein FtsY [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|300946787|ref|ZP_07161031.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 116-1]
 gi|300956799|ref|ZP_07169066.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 175-1]
 gi|301021814|ref|ZP_07185778.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 196-1]
 gi|120576|sp|P10121|FTSY_ECOLI RecName: Full=Cell division protein ftsY
 gi|41498|emb|CAA27984.1| unnamed protein product [Escherichia coli K-12]
 gi|466600|gb|AAB18439.1| CG Site No. 18295 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789874|gb|AAC76489.1| Signal Recognition Particle (SRP) receptor [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85676579|dbj|BAE77829.1| fused Signal Recognition Particle (SRP) receptor [Escherichia coli
           str. K12 substr. W3110]
 gi|169890813|gb|ACB04520.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein; conserved protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|238861253|gb|ACR63251.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Escherichia coli BW2952]
 gi|253322751|gb|ACT27353.1| signal recognition particle-docking protein FtsY [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260447520|gb|ACX37942.1| signal recognition particle-docking protein FtsY [Escherichia coli
           DH1]
 gi|299881447|gb|EFI89658.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 196-1]
 gi|300316438|gb|EFJ66222.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 175-1]
 gi|300453544|gb|EFK17164.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 116-1]
 gi|315138038|dbj|BAJ45197.1| cell division protein FtsY [Escherichia coli DH1]
          Length = 497

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 183 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 242

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 243 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGV 301

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 302 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 422 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 481

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 482 PFKADDFIEALFARED 497


>gi|168241723|ref|ZP_02666655.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449622|ref|YP_002047596.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194407926|gb|ACF68145.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338916|gb|EDZ25680.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 491

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|188492944|ref|ZP_03000214.1| cell division protein FtsY [Escherichia coli 53638]
 gi|194435805|ref|ZP_03067908.1| cell division protein FtsY [Escherichia coli 101-1]
 gi|254163388|ref|YP_003046496.1| cell division protein FtsY [Escherichia coli B str. REL606]
 gi|300930995|ref|ZP_07146353.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 187-1]
 gi|188488143|gb|EDU63246.1| cell division protein FtsY [Escherichia coli 53638]
 gi|194425348|gb|EDX41332.1| cell division protein FtsY [Escherichia coli 101-1]
 gi|242378985|emb|CAQ33783.1| SRP receptor, subunit of Signal Recognition Particle Protein
           Translocation System [Escherichia coli BL21(DE3)]
 gi|253975289|gb|ACT40960.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved hypothetical protein [Escherichia coli
           B str. REL606]
 gi|253979445|gb|ACT45115.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Escherichia coli BL21(DE3)]
 gi|300461173|gb|EFK24666.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 187-1]
 gi|323959684|gb|EGB55335.1| signal recognition particle-docking protein FtsY [Escherichia coli
           H489]
 gi|323970062|gb|EGB65337.1| signal recognition particle-docking protein FtsY [Escherichia coli
           TA007]
          Length = 498

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|315635037|ref|ZP_07890318.1| cell division protein FtsY [Aggregatibacter segnis ATCC 33393]
 gi|315476299|gb|EFU67050.1| cell division protein FtsY [Aggregatibacter segnis ATCC 33393]
          Length = 518

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 192/312 (61%), Gaps = 2/312 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +  Q+  SE   +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV
Sbjct: 203 VETQEKPSEG-GFFSRLLKGLVKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGV 261

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               KI+  L      + +     LY  +   + ++L P+++P   D S +P+VIL+VGV
Sbjct: 262 PTTTKIINNLTQHATRQQLQNADTLYQQLKLEMGEILKPVAQPLRIDGSKKPYVILMVGV 321

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A
Sbjct: 322 NGVGKTTTIGKLARKFQMEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSA 381

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A A+ +DVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA
Sbjct: 382 SVIFDAMQSAAARNIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDA 441

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL 
Sbjct: 442 GTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLR 501

Query: 300 PFVAKDFSAVIT 311
            F A++F   + 
Sbjct: 502 EFNAEEFIDALF 513


>gi|332085341|gb|EGI90513.1| signal recognition particle-docking protein FtsY [Shigella boydii
           5216-82]
          Length = 497

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 183 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 242

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 243 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 301

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 302 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 422 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 481

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 482 PFKADDFIEALFARED 497


>gi|331649271|ref|ZP_08350357.1| cell division protein FtsY [Escherichia coli M605]
 gi|330909505|gb|EGH38019.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Escherichia coli AA86]
 gi|331041769|gb|EGI13913.1| cell division protein FtsY [Escherichia coli M605]
          Length = 498

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|82778728|ref|YP_405077.1| cell division protein FtsY [Shigella dysenteriae Sd197]
 gi|309785785|ref|ZP_07680416.1| signal recognition particle-docking protein FtsY [Shigella
           dysenteriae 1617]
 gi|81242876|gb|ABB63586.1| cell division membrane protein [Shigella dysenteriae Sd197]
 gi|308926905|gb|EFP72381.1| signal recognition particle-docking protein FtsY [Shigella
           dysenteriae 1617]
          Length = 498

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|300822730|ref|ZP_07102867.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 119-7]
 gi|300524730|gb|EFK45799.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 119-7]
          Length = 498

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|194431246|ref|ZP_03063539.1| cell division protein FtsY [Shigella dysenteriae 1012]
 gi|194420701|gb|EDX36777.1| cell division protein FtsY [Shigella dysenteriae 1012]
 gi|332085988|gb|EGI91152.1| signal recognition particle-docking protein FtsY [Shigella
           dysenteriae 155-74]
          Length = 497

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 183 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 242

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 243 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 301

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 302 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 422 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 481

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 482 PFKADDFIEALFARED 497


>gi|116749888|ref|YP_846575.1| signal recognition particle-docking protein FtsY [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698952|gb|ABK18140.1| signal recognition particle-docking protein FtsY [Syntrophobacter
           fumaroxidans MPOB]
          Length = 326

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 121/310 (39%), Positives = 196/310 (63%), Gaps = 3/310 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAV 62
           ++ AS    +  +L      T  +    +  + +  +++D  + +ELE++LI SD+GV  
Sbjct: 18  EEAASGKRRFFSRLRDRLHKTREQFINRMDRLVLGRKKIDMDLLDELEEVLITSDLGVRT 77

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            Q ++E++  K   +++   + L D + E I ++L   S  ++   S RP VI+++GVNG
Sbjct: 78  TQLLLEKVADKIKRQELKDPQKLRDQLREEITRILSVESSAWD-PRSARPFVIMIIGVNG 136

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ +    GLKVML A DTFR+AA++QL +W +R +   V  + GSD +A+
Sbjct: 137 VGKTTTIGKLAHQFKSEGLKVMLVAADTFRAAAVEQLSLWGERVNVPVVKQKSGSDPSAV 196

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A   A ++ +D++++DTAGR+H    LM  + K+ RV+ R DP APH +L VLDA+T
Sbjct: 197 AFDAMDAAVSRGMDIVLLDTAGRMHTKVNLMEELKKVQRVVNRKDPSAPHEILLVLDAST 256

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q  +F    G TGLI+TK+DGTA+GG ++ I    ++PV ++G+GE ++DL PF
Sbjct: 257 GQNALSQARLFKEEIGVTGLILTKLDGTAKGGIIVAISDELQLPVRYIGIGESLDDLRPF 316

Query: 302 VAKDFSAVIT 311
             ++F+  + 
Sbjct: 317 DPEEFTRALF 326


>gi|293366800|ref|ZP_06613476.1| cell division protein FtsY [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319101|gb|EFE59471.1| cell division protein FtsY [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329736560|gb|EGG72826.1| signal recognition particle-docking protein FtsY [Staphylococcus
           epidermidis VCU045]
          Length = 408

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 128/327 (39%), Positives = 193/327 (59%), Gaps = 15/327 (4%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 73  EEIEAQKIG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 130

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPHVILVV 117
             K+ +EL T+   +++     L +V  ++ K++    +  ++  +      R +VIL+V
Sbjct: 131 VMKLTDELRTEAQRRNIQETEDLREV--IVEKIVEIYHQEDDYSEAMNIEDGRLNVILMV 188

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI QL +W +R   + V    GSD
Sbjct: 189 GVNGVGKTTTIGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSD 248

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A   A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  L
Sbjct: 249 PAAVVYDAINAAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCL 308

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQNAL Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++D
Sbjct: 309 DATTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDD 368

Query: 298 LEPFVAKD-----FSAVITGCLDYGEE 319
           L+PF  +      F+ +I    D  EE
Sbjct: 369 LQPFNPESYVYGLFADMIEQNEDIPEE 395


>gi|254508809|ref|ZP_05120920.1| cell division protein FtsY [Vibrio parahaemolyticus 16]
 gi|219548266|gb|EED25280.1| cell division protein FtsY [Vibrio parahaemolyticus 16]
          Length = 412

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 129/312 (41%), Positives = 200/312 (64%), Gaps = 1/312 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  A T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 101 EQEKPTESFFARLKRSLARTKANIGAGFFGLFKGKQIDDDLFEELEEQLLIADVGMDTTT 160

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI++ L  K   +++     LY  + E + ++L  + KP   D S  P+VIL+VGVNGVG
Sbjct: 161 KIIDSLTEKASRQELKDGEALYGLLKEEMAEILSTVEKPLEVDTSKTPYVILMVGVNGVG 220

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ Y
Sbjct: 221 KTTTIGKLAKQFQAEGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIY 280

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+AK VDV+I DTAGRL N S LM  + K++RV++++D  APH ++  LDA TGQ
Sbjct: 281 DAIESAKAKGVDVVIADTAGRLQNKSNLMEELRKIVRVMQKVDGSAPHEIMLTLDAGTGQ 340

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PF  
Sbjct: 341 NAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFET 400

Query: 304 KDFSAVITGCLD 315
           ++F   +    D
Sbjct: 401 QEFIDALFSRED 412


>gi|240949098|ref|ZP_04753446.1| cell division protein FtsY-like protein [Actinobacillus minor
           NM305]
 gi|240296493|gb|EER47125.1| cell division protein FtsY-like protein [Actinobacillus minor
           NM305]
          Length = 517

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 123/301 (40%), Positives = 191/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L +G   T   +  G  +    +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 210 GFFSRLIQGLIKTKQSIGSGFFNFFRGKKIDDELFEELEEQLLIADLGMPTTTKIINNLS 269

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                + +     LY +  E +  +L P+++P   D S +P+VIL+VGVNGVGKTT IGK
Sbjct: 270 QHATKQQLKDADALYQLLKEELADVLKPVARPLEIDTSKKPYVILMVGVNGVGKTTTIGK 329

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+++  + G  VMLAAGDTFR+AA++QL++W +R +   +    GSD+A++ ++A + A 
Sbjct: 330 LARQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQTSGSDSASVIFDAMQSAS 389

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK +DVLI DTAGRL N + LM  + K++RV+++ D  APH ++  LDA TGQNA+ Q +
Sbjct: 390 AKNIDVLIADTAGRLQNKNNLMDELKKIVRVMQKYDETAPHEIMLTLDAGTGQNAISQAK 449

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF A++F   +
Sbjct: 450 LFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEFIEAL 509

Query: 311 T 311
            
Sbjct: 510 F 510


>gi|168818612|ref|ZP_02830612.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205344537|gb|EDZ31301.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
          Length = 491

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|323188945|gb|EFZ74229.1| signal recognition particle-docking protein FtsY [Escherichia coli
           RN587/1]
          Length = 498

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|94495524|ref|ZP_01302104.1| signal recognition particle-docking protein FtsY [Sphingomonas sp.
           SKA58]
 gi|94424912|gb|EAT09933.1| signal recognition particle-docking protein FtsY [Sphingomonas sp.
           SKA58]
          Length = 310

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 139/301 (46%), Positives = 195/301 (64%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +W  +L  G   TS +L + +T + +   LDD   +E+E+ LI SD+G A+A ++ + L 
Sbjct: 5   NWRDRLFGGLKRTSDRLGDNLTGLFTKAALDDQTLDEIEEALIVSDLGPAMAARVRDRLA 64

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             R+ K+++ + +   ++E I K L P+++P   +   RP VILV+GVNG GKTT I KL
Sbjct: 65  EGRFNKELTEEYLREIIAEEIEKTLAPVARPLEIEAFPRPQVILVIGVNGSGKTTTIAKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +    +    VMLAAGDTFR+AAI QLK+WA+R     +  + G DAA + ++A KQA A
Sbjct: 125 AHNFLEQDYGVMLAAGDTFRAAAIGQLKVWAERLGIPIIAGKEGGDAAGIVFDAVKQATA 184

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +DVLI+DTAGRL N + LM  + K+ RVL RL+P APH V+ VLDATTGQNAL Q+E+
Sbjct: 185 TGIDVLIVDTAGRLQNKTELMDELAKVRRVLGRLNPAAPHDVVLVLDATTGQNALNQIEV 244

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A  TGL+MTK+DGTARGG L+      ++P++ +GVGE I DL PF   D +  I 
Sbjct: 245 FKETAQVTGLVMTKLDGTARGGVLVAAAEKFRLPIHAIGVGEKIEDLRPFDPGDMAKAIA 304

Query: 312 G 312
           G
Sbjct: 305 G 305


>gi|167549211|ref|ZP_02342970.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205354811|ref|YP_002228612.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858809|ref|YP_002245460.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205274592|emb|CAR39642.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205325845|gb|EDZ13684.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|206710612|emb|CAR34970.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326629955|gb|EGE36298.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 491

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|320175705|gb|EFW50793.1| cell division protein FtsY [Shigella dysenteriae CDC 74-1112]
          Length = 500

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 194/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 186 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 245

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +    VLY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 246 ETTRKIITNLTEGASRKQLRDAEVLYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 304

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 305 NGVGKTTTIGKLARQFELQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 364

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 365 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 424

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 425 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 484

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 485 PFKADDFIEALFARED 500


>gi|113460560|ref|YP_718624.1| signal recognition particle-docking protein FtsY [Haemophilus
           somnus 129PT]
 gi|112822603|gb|ABI24692.1| signal recognition particle-docking protein FtsY [Haemophilus
           somnus 129PT]
          Length = 447

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 192/312 (61%), Gaps = 1/312 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +  ++  +    +  +L KG   T   +  G   +   +++DD + EELE+ L+ +DIGV
Sbjct: 132 IPQEQEKTAENGFFSRLVKGLLKTKQNIGIGFRSLFLGKKIDDELFEELEEQLLIADIGV 191

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               KI+  L+     K +    +LY  +   +  +L P+ +P   D S +P+VIL+VGV
Sbjct: 192 PTTTKIINNLIQHASRKQLQEADLLYQQLKVELADILKPVEQPLQLDNSKKPYVILMVGV 251

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G  VMLAAGDTFR+AA++QL++W +R     +    GSD+A
Sbjct: 252 NGVGKTTTIGKLANQFQRQGKSVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQSTGSDSA 311

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A A+ +DVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LD+
Sbjct: 312 SVIFDAMQSAVARNIDVLIADTAGRLQNKNNLMDELKKIVRVIKKCDETAPHEIMLTLDS 371

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I+DL 
Sbjct: 372 GTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIDDLR 431

Query: 300 PFVAKDFSAVIT 311
           PF A +F   + 
Sbjct: 432 PFQADEFIDALF 443


>gi|331655047|ref|ZP_08356046.1| cell division protein FtsY [Escherichia coli M718]
 gi|331047062|gb|EGI19140.1| cell division protein FtsY [Escherichia coli M718]
          Length = 498

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|323174103|gb|EFZ59731.1| signal recognition particle-docking protein FtsY [Escherichia coli
           LT-68]
          Length = 426

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 194/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 112 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 171

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 172 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 230

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W+ R +   +    G+D+A
Sbjct: 231 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWSQRNNIPVIAQHTGADSA 290

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 291 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 350

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 351 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 410

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 411 PFKADDFIEALFARED 426


>gi|82545827|ref|YP_409774.1| cell division protein FtsY [Shigella boydii Sb227]
 gi|187733547|ref|YP_001882149.1| cell division protein FtsY [Shigella boydii CDC 3083-94]
 gi|81247238|gb|ABB67946.1| cell division membrane protein [Shigella boydii Sb227]
 gi|187430539|gb|ACD09813.1| cell division protein FtsY [Shigella boydii CDC 3083-94]
 gi|320187768|gb|EFW62443.1| cell division protein FtsY [Shigella flexneri CDC 796-83]
          Length = 497

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 183 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 242

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 243 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 301

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 302 NGVGKTTTIGKLARQFELQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 422 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 481

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 482 PFKADDFIEALFARED 497


>gi|312797361|ref|YP_004030283.1| cell division protein ftsY [Burkholderia rhizoxinica HKI 454]
 gi|312169136|emb|CBW76139.1| Cell division protein ftsY [Burkholderia rhizoxinica HKI 454]
          Length = 553

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 123/304 (40%), Positives = 180/304 (59%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SW+ +L  G   TS  L    T I    ++D+ + EELE  L+ +D GV     +++ 
Sbjct: 256 KRSWLSRLKSGLTKTSSSL----TGIFIGVKVDEALFEELETALLMADAGVDATTYLLDA 311

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  ++ ++  + +   +  L+ ++L PL +      +  P V+++ GVNG GKTT I
Sbjct: 312 LRQKVRSERLTDAQQVKAALRTLLIELLRPLEQSMVLGRAQ-PLVMMIAGVNGAGKTTSI 370

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      VMLAAGDTFR+AA +QL IW  R +   +  +   D AA+ ++A   
Sbjct: 371 GKLAKHLQSFNQSVMLAAGDTFRAAAREQLVIWGQRNNVAVI-QQESGDPAAVIFDAVGA 429

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVL+ DTAGRL     LM  + K+ RV+ +    APH +L VLDA TGQNAL Q
Sbjct: 430 ARARGIDVLMADTAGRLPTQLHLMEELRKVKRVIGKAMDGAPHEILLVLDANTGQNALAQ 489

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TG+I+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PFVA +F+ 
Sbjct: 490 VKAFDEALGLTGIIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFVAAEFAD 549

Query: 309 VITG 312
            + G
Sbjct: 550 ALLG 553


>gi|77461558|ref|YP_351065.1| signal recognition particle-docking protein FtsY [Pseudomonas
           fluorescens Pf0-1]
 gi|77385561|gb|ABA77074.1| cell division protein [Pseudomonas fluorescens Pf0-1]
          Length = 515

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 192/313 (61%), Gaps = 2/313 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59
           +   +       +  +L +G + TS  + EG+  +   ++ +DD + ++LE  L+ +D+G
Sbjct: 197 VEAPRTEETKAGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLDDLETRLLTADVG 256

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           V     I++ L  K   K+++    LY  +   +  ML P+ +P      ++P VILVVG
Sbjct: 257 VEATSVIIQRLTQKVARKELADSDALYKSLQAELAAMLKPVEQPLKIASRNKPFVILVVG 316

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+
Sbjct: 317 VNGAGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNKIPVIAQHTGADS 376

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLD
Sbjct: 377 ASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLD 436

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL
Sbjct: 437 AGTGQNAINQAKQFNQTVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDL 496

Query: 299 EPFVAKDFSAVIT 311
             F A+ F   + 
Sbjct: 497 RTFEAEPFVQALF 509


>gi|238910428|ref|ZP_04654265.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 491

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|15803976|ref|NP_290012.1| cell division protein FtsY [Escherichia coli O157:H7 EDL933]
 gi|15833567|ref|NP_312340.1| cell division protein FtsY [Escherichia coli O157:H7 str. Sakai]
 gi|168747042|ref|ZP_02772064.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4113]
 gi|168753232|ref|ZP_02778239.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4401]
 gi|168759502|ref|ZP_02784509.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4501]
 gi|168765827|ref|ZP_02790834.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4486]
 gi|168772627|ref|ZP_02797634.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4196]
 gi|168779563|ref|ZP_02804570.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4076]
 gi|168785285|ref|ZP_02810292.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC869]
 gi|168797250|ref|ZP_02822257.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC508]
 gi|195934958|ref|ZP_03080340.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4024]
 gi|208809270|ref|ZP_03251607.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4206]
 gi|208813507|ref|ZP_03254836.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4045]
 gi|208819501|ref|ZP_03259821.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4042]
 gi|209398368|ref|YP_002272908.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4115]
 gi|217326123|ref|ZP_03442207.1| cell division protein FtsY [Escherichia coli O157:H7 str. TW14588]
 gi|254795384|ref|YP_003080221.1| cell division protein FtsY [Escherichia coli O157:H7 str. TW14359]
 gi|261224747|ref|ZP_05939028.1| membrane-binding signal recognition particle (SRP) receptor
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254358|ref|ZP_05946891.1| membrane-binding signal recognition particle (SRP) receptor
           [Escherichia coli O157:H7 str. FRIK966]
 gi|12518120|gb|AAG58573.1|AE005569_13 cell division membrane protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13363787|dbj|BAB37736.1| cell division membrane protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|187771445|gb|EDU35289.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4196]
 gi|188018305|gb|EDU56427.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4113]
 gi|189002631|gb|EDU71617.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4076]
 gi|189358908|gb|EDU77327.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4401]
 gi|189364762|gb|EDU83181.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4486]
 gi|189369833|gb|EDU88249.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4501]
 gi|189374442|gb|EDU92858.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC869]
 gi|189380153|gb|EDU98569.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC508]
 gi|208729071|gb|EDZ78672.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4206]
 gi|208734784|gb|EDZ83471.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4045]
 gi|208739624|gb|EDZ87306.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4042]
 gi|209159768|gb|ACI37201.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC4115]
 gi|209756008|gb|ACI76316.1| cell division membrane protein [Escherichia coli]
 gi|209756010|gb|ACI76317.1| cell division membrane protein [Escherichia coli]
 gi|209756012|gb|ACI76318.1| cell division membrane protein [Escherichia coli]
 gi|209756014|gb|ACI76319.1| cell division membrane protein [Escherichia coli]
 gi|209756016|gb|ACI76320.1| cell division membrane protein [Escherichia coli]
 gi|217322344|gb|EEC30768.1| cell division protein FtsY [Escherichia coli O157:H7 str. TW14588]
 gi|254594784|gb|ACT74145.1| membrane-binding signal recognition particle (SRP) receptor
           [Escherichia coli O157:H7 str. TW14359]
 gi|320191518|gb|EFW66168.1| cell division protein FtsY [Escherichia coli O157:H7 str. EC1212]
 gi|320639748|gb|EFX09342.1| signal recognition particle-docking protein FtsY [Escherichia coli
           O157:H7 str. G5101]
 gi|320645247|gb|EFX14263.1| signal recognition particle-docking protein FtsY [Escherichia coli
           O157:H- str. 493-89]
 gi|320650558|gb|EFX19024.1| signal recognition particle-docking protein FtsY [Escherichia coli
           O157:H- str. H 2687]
 gi|320655751|gb|EFX23674.1| signal recognition particle-docking protein FtsY [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320666557|gb|EFX33540.1| signal recognition particle-docking protein FtsY [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326337566|gb|EGD61401.1| cell division protein FtsY [Escherichia coli O157:H7 str. 1044]
 gi|326344683|gb|EGD68432.1| cell division protein FtsY [Escherichia coli O157:H7 str. 1125]
          Length = 498

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|114763008|ref|ZP_01442438.1| Signal recognition particle-docking protein FtsY [Pelagibaca
           bermudensis HTCC2601]
 gi|114544332|gb|EAU47340.1| Signal recognition particle-docking protein FtsY [Roseovarius sp.
           HTCC2601]
          Length = 462

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 136/312 (43%), Positives = 201/312 (64%), Gaps = 10/312 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             Q  +S     + +L           +E  +  +  R LDD + E LE+LLI SD+GV 
Sbjct: 158 PTQTPSSARPGLLGRLFG---------RETPSAPVVRRVLDDDMLESLEELLIASDMGVD 208

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            A ++   +   RY K VS Q +   ++  + +++ P++KP    +  +P V+LVVGVNG
Sbjct: 209 TALRVSANIAEGRYGKRVSTQEIKAALAAEVARVMDPVAKPLPL-YPKKPQVVLVVGVNG 267

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL++W DR     + +  GSD A+L
Sbjct: 268 SGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASL 327

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A  +AQA+  D+L+IDTAGRL N   LM  + K++RV+++ DP APH+ L VLDATT
Sbjct: 328 AFDAMTKAQAEGADLLMIDTAGRLQNRQDLMEELAKIVRVIRKKDPDAPHNTLLVLDATT 387

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL QVE+F  VA  +GL+MTK+DGTA+GG L+ +     +P++ +GVGE I+DL PF
Sbjct: 388 GQNALTQVEIFRQVADVSGLVMTKLDGTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPF 447

Query: 302 VAKDFSAVITGC 313
             ++F+A +TG 
Sbjct: 448 DPEEFAAALTGL 459


>gi|293453769|ref|ZP_06664188.1| cell division protein FtsY [Escherichia coli B088]
 gi|300815331|ref|ZP_07095556.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 107-1]
 gi|309794744|ref|ZP_07689166.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 145-7]
 gi|331670290|ref|ZP_08371129.1| cell division protein FtsY [Escherichia coli TA271]
 gi|291321895|gb|EFE61326.1| cell division protein FtsY [Escherichia coli B088]
 gi|300532223|gb|EFK53285.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 107-1]
 gi|308121794|gb|EFO59056.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 145-7]
 gi|331062352|gb|EGI34272.1| cell division protein FtsY [Escherichia coli TA271]
          Length = 498

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|320661534|gb|EFX28949.1| signal recognition particle-docking protein FtsY [Escherichia coli
           O55:H7 str. USDA 5905]
          Length = 498

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|319892233|ref|YP_004149108.1| Signal recognition particle receptor protein FtsY, alpha subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161929|gb|ADV05472.1| Signal recognition particle receptor protein FtsY, alpha subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323464670|gb|ADX76823.1| cell division protein FtsY, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 399

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 124/322 (38%), Positives = 192/322 (59%), Gaps = 8/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAV 62
           +++ S+ +    K  +G   +    +  + ++++  R++D+   E LE++LI++D+G   
Sbjct: 70  EELESQKIG--AKFREGLEKSRENFQNQLNNLLAHYRKVDEDFFEALEEMLIQADVGFNT 127

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGV 119
             ++V+EL  +   ++++    L    V +++        K    +    R +VIL+VGV
Sbjct: 128 VMELVDELRMEAKRRNITETEDLREAIVEKIVEIYQQDDEKSEEMNIEDGRLNVILMVGV 187

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI+QL++W  R   D +    GSD A
Sbjct: 188 NGVGKTTTIGKLAHRYQAQGKKVMLAAGDTFRAGAIEQLEVWGQRVGVDVIRQGEGSDPA 247

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A   A+ K VD+LI DTAGRL N   LM  + K+ RV+ R  P APH VL  LDA
Sbjct: 248 AVMYDAINAAKNKGVDILICDTAGRLQNKQNLMNELEKVKRVISRSVPDAPHEVLLALDA 307

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q + F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+
Sbjct: 308 TTGQNALAQAKAFKEVTDVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQ 367

Query: 300 PFVAKDFSAVITGCLDYGEEKI 321
           PF A+ +   +    D  E+ +
Sbjct: 368 PFNAESYVYGLFA--DMIEQNV 387


>gi|157158382|ref|YP_001464929.1| cell division protein FtsY [Escherichia coli E24377A]
 gi|218697147|ref|YP_002404814.1| cell division protein FtsY [Escherichia coli 55989]
 gi|157080412|gb|ABV20120.1| cell division protein FtsY [Escherichia coli E24377A]
 gi|218353879|emb|CAV00274.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein ; conserved hypothetical protein [Escherichia
           coli 55989]
 gi|323182929|gb|EFZ68330.1| signal recognition particle-docking protein FtsY [Escherichia coli
           1357]
          Length = 497

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 183 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 242

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 243 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 301

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 302 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 362 SVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 422 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 481

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 482 PFKADDFIEALFARED 497


>gi|320181957|gb|EFW56863.1| cell division protein FtsY [Shigella boydii ATCC 9905]
          Length = 498

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|197336427|ref|YP_002157238.1| cell division protein FtsY [Vibrio fischeri MJ11]
 gi|197317917|gb|ACH67364.1| cell division protein FtsY [Vibrio fischeri MJ11]
          Length = 412

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 132/310 (42%), Positives = 201/310 (64%), Gaps = 1/310 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            +     + S+  +L +    T   +  G   + S +++DD + EELE+ L+ +D+G+  
Sbjct: 99  EEVQEKPTESFFARLKRSLQRTKENIGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDT 158

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             +I++ L  K   +D+     LY  + E + ++L  + +P   D  + PHVIL+VGVNG
Sbjct: 159 TVRIIDSLTEKASKQDLKDGEALYGLLKEEMAEILAKVEQPLEIDEKNMPHVILMVGVNG 218

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+K+  + G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++
Sbjct: 219 VGKTTTIGKLAKQFQNEGKSVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASV 278

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A + A+A+KVDV+I DTAGRL N S LM  + K++RV+K++DP APH ++  LDA T
Sbjct: 279 IYDAIEAARARKVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDPSAPHEIMLTLDAGT 338

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ F+GVGEGI+DL PF
Sbjct: 339 GQNAISQAKLFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRFIGVGEGIDDLRPF 398

Query: 302 VAKDFSAVIT 311
           VA+DF   + 
Sbjct: 399 VAQDFIEALF 408


>gi|324009352|gb|EGB78571.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 57-2]
          Length = 498

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|320194034|gb|EFW68667.1| cell division protein FtsY [Escherichia coli WV_060327]
          Length = 498

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|261344966|ref|ZP_05972610.1| cell division transporter substrate-binding protein FtsY
           [Providencia rustigianii DSM 4541]
 gi|282567109|gb|EFB72644.1| cell division transporter substrate-binding protein FtsY
           [Providencia rustigianii DSM 4541]
          Length = 701

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 129/311 (41%), Positives = 195/311 (62%), Gaps = 2/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S ++   +   +  +L KG   T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 388 SVEQEKPKKEGFFSRLKKGLLKTRQNLGLGFFSLFSGKKIDDDLFEELEEQLLIADVGVD 447

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K++     LY  + E +  +L  + KP   +   +P+VIL+VGVN
Sbjct: 448 TTRKIINNLTAHASRKELKDAEALYGKLREEMSDILATVDKPLVIE-GKKPYVILMVGVN 506

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D A+
Sbjct: 507 GVGKTTTIGKLARQYQSEGKSVMLAAGDTFRAAAVEQLQVWGERNKISVVAQHTGADPAS 566

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + AQAK VDVL+ DTAGRL N + LM  + K++RV+++LD  APH ++  LDA+
Sbjct: 567 VIFDAIQSAQAKGVDVLLADTAGRLQNKAHLMEELKKIVRVMRKLDDTAPHEIMLTLDAS 626

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++G+GEGI DL P
Sbjct: 627 TGQNAVSQAKLFNDAVGLTGITLTKLDGTAKGGVIFSIADQFGIPIRYIGIGEGIEDLRP 686

Query: 301 FVAKDFSAVIT 311
           F A DF   + 
Sbjct: 687 FKADDFIEALF 697


>gi|218702209|ref|YP_002409838.1| cell division protein FtsY [Escherichia coli IAI39]
 gi|218372195|emb|CAR20057.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein ; conserved hypothetical protein [Escherichia
           coli IAI39]
          Length = 495

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 181 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 240

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 241 ETTRKIITNLTEGATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 299

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 300 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 359

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 360 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 419

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 420 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 479

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 480 PFKADDFIEALFARED 495


>gi|319406390|emb|CBI80031.1| cell division protein [Bartonella sp. AR 15-3]
          Length = 410

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 155/312 (49%), Positives = 220/312 (70%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S   V  +   W  +L KG + +S +L + I  +   ++LD+   +ELED+LI++D+G+
Sbjct: 96  LSIPTVEQKKAVWFERLKKGLSLSSQQLSDSIGTLFVKKKLDENTLQELEDILIQADLGI 155

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               +I++ L T RY K+ S + +   V++ I K+L P++ P   D +H+PHVIL+VGVN
Sbjct: 156 ETTTRIIDILATSRYEKNFSSKDIYTIVTDEIKKVLEPVAFPLEIDLNHKPHVILLVGVN 215

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++  GLKVML AGDTFR+AAI+QL IW +RT A  +  ++G+DAA+
Sbjct: 216 GTGKTTTIGKLAAKLTAGGLKVMLVAGDTFRAAAIEQLHIWGERTKAPVISGKLGADAAS 275

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++A+ +A+ +  DVLIIDTAGRL N   LM  + K+IRVL + +P APH+VLQ LDAT
Sbjct: 276 LAFDAYGKAKKENSDVLIIDTAGRLQNKIELMDELAKIIRVLGKHNPQAPHTVLQTLDAT 335

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV +F  +AG  GL+MTK+DG+ARGG L+ I   HK+PV+F+G+GE + DLEP
Sbjct: 336 TGQNALNQVNVFRDIAGVNGLVMTKLDGSARGGILVAIASKHKLPVHFIGIGENVEDLEP 395

Query: 301 FVAKDFSAVITG 312
           F A DF+  I G
Sbjct: 396 FSASDFAEAIIG 407


>gi|117625742|ref|YP_859065.1| cell division protein FtsY [Escherichia coli APEC O1]
 gi|115514866|gb|ABJ02941.1| cell division protein FtsY [Escherichia coli APEC O1]
          Length = 498

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 124/316 (39%), Positives = 192/316 (60%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQN + Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNGVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|170682136|ref|YP_001745713.1| cell division protein FtsY [Escherichia coli SMS-3-5]
 gi|170519854|gb|ACB18032.1| cell division protein FtsY [Escherichia coli SMS-3-5]
          Length = 512

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 198 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 257

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 258 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 316

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 317 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 376

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 377 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 436

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 437 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 496

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 497 PFKADDFIEALFARED 512


>gi|327404681|ref|YP_004345519.1| signal recognition particle-docking protein FtsY [Fluviicola
           taffensis DSM 16823]
 gi|327320189|gb|AEA44681.1| signal recognition particle-docking protein FtsY [Fluviicola
           taffensis DSM 16823]
          Length = 317

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 133/313 (42%), Positives = 187/313 (59%), Gaps = 12/313 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
            W  K     L KG   T       +T  ++   R+DD V +ELE++LI SD+GV    K
Sbjct: 5   GWFSKENKETLDKGLEKTKESFFGKLTRSLVGKSRVDDEVLDELEEILISSDVGVNTTLK 64

Query: 66  IVEELLTKR-YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-----SHRPHVILVVGV 119
           I++ +  +    K V    +   + E I  +L         ++     +  PHVI+VVGV
Sbjct: 65  IIDRINERVSKDKYVGTDELNKVLKEEIANLLSENDSDGPSEYTIPAHNGNPHVIMVVGV 124

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +   +G KV+L A DTFR+AA+DQL IW++R     V   +G+D A
Sbjct: 125 NGVGKTTSIGKLANQFKKSGKKVVLGAADTFRAAAVDQLIIWSERVGVPIVHQGMGADPA 184

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A   A+A+  DV+IIDTAGRLHN   LM  + K+ RV++++ P APH +L VLD 
Sbjct: 185 SVAFDALSSAKAQGADVVIIDTAGRLHNKVNLMNELSKIKRVMEKVIPDAPHEILLVLDG 244

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA  Q + F      TGLI+TK+DGTA+GG +I I     IPV F+GVGEGI DL+
Sbjct: 245 STGQNAYEQAKQFALATSLTGLIITKLDGTAKGGVVIGISDQMSIPVRFIGVGEGIEDLQ 304

Query: 300 PFVAKDFSAVITG 312
            F  ++F + I G
Sbjct: 305 VFHKEEFVSSIFG 317


>gi|168235165|ref|ZP_02660223.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194736508|ref|YP_002116506.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194712010|gb|ACF91231.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197291314|gb|EDY30666.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|322614063|gb|EFY10999.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617955|gb|EFY14848.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625431|gb|EFY22257.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629896|gb|EFY26669.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632215|gb|EFY28966.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636434|gb|EFY33141.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643095|gb|EFY39669.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644710|gb|EFY41246.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651268|gb|EFY47652.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322652819|gb|EFY49158.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659121|gb|EFY55373.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663177|gb|EFY59381.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668664|gb|EFY64817.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674533|gb|EFY70626.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678262|gb|EFY74323.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682482|gb|EFY78503.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684195|gb|EFY80201.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192250|gb|EFZ77482.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196323|gb|EFZ81475.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201875|gb|EFZ86938.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206418|gb|EFZ91379.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212011|gb|EFZ96838.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216916|gb|EGA01639.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222316|gb|EGA06699.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224330|gb|EGA08619.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228258|gb|EGA12389.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233474|gb|EGA17567.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237064|gb|EGA21131.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243721|gb|EGA27737.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246037|gb|EGA30024.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323250813|gb|EGA34691.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323257691|gb|EGA41377.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323261900|gb|EGA45467.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267708|gb|EGA51190.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323268588|gb|EGA52055.1| signal recognition particle-docking protein FtsY [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 491

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 190/313 (60%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  +   + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKGEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|293416868|ref|ZP_06659505.1| cell division protein FtsY [Escherichia coli B185]
 gi|291431444|gb|EFF04429.1| cell division protein FtsY [Escherichia coli B185]
          Length = 498

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|327483045|gb|AEA77452.1| Signal recognition particle receptor protein FtsY [Vibrio cholerae
           LMA3894-4]
          Length = 390

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 79  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 138

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 139 KIIANLTAKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 198

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 199 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 258

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 259 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 318

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 319 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 378

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 379 QEFIDALF 386


>gi|119503518|ref|ZP_01625601.1| signal recognition particle-docking protein FtsY [marine gamma
           proteobacterium HTCC2080]
 gi|119460580|gb|EAW41672.1| signal recognition particle-docking protein FtsY [marine gamma
           proteobacterium HTCC2080]
          Length = 339

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 122/312 (39%), Positives = 192/312 (61%), Gaps = 3/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60
             + ++ +      +  +G + T  +   GI  +   R+ +D+ V E LED L+ +D+G+
Sbjct: 26  PAELLSVDEQGMFSRFRRGLSRTGGQFSNGIGALFLGRKVIDENVLEALEDQLLTADVGI 85

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              Q+IV ++  +   K++S    + + ++  +  +L P  +P   D  ++P VILVVGV
Sbjct: 86  EATQRIVSDITERISRKELSDGAAVMEATKSALLDILTPCEQPLAPD-DNKPFVILVVGV 144

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+ +    G +VMLAAGDTFR+AA++QL+ W +R     +    G+D+A
Sbjct: 145 NGAGKTTTIGKLAHRFKAEGKQVMLAAGDTFRAAAVEQLQAWGERNEVPVIAQHTGADSA 204

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VD+LI DTAGRL N S LM  + K++RV++++DP APH  L VLDA
Sbjct: 205 SVLFDAVQAAKARGVDILIADTAGRLQNKSHLMDELEKVVRVMRKVDPQAPHETLLVLDA 264

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q E F    G TG+ ++K+DGTARGG +  I      P+ F+G+GE + DL+
Sbjct: 265 GTGQNAVSQAEEFDRTVGVTGIALSKLDGTARGGVIFAIAQRLARPIRFVGIGEAVTDLQ 324

Query: 300 PFVAKDFSAVIT 311
           PF A  F + + 
Sbjct: 325 PFDANAFVSALF 336


>gi|27467828|ref|NP_764465.1| signal recognition particle [Staphylococcus epidermidis ATCC 12228]
 gi|27315373|gb|AAO04507.1|AE016747_4 signal recognition particle [Staphylococcus epidermidis ATCC 12228]
 gi|329724316|gb|EGG60828.1| signal recognition particle-docking protein FtsY [Staphylococcus
           epidermidis VCU144]
 gi|329736323|gb|EGG72595.1| signal recognition particle-docking protein FtsY [Staphylococcus
           epidermidis VCU028]
          Length = 408

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 131/326 (40%), Positives = 192/326 (58%), Gaps = 13/326 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 73  EEIEAQKIG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 130

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKML---MPLSKPFNWDFSHRPHVILVVG 118
             K+ +EL T+   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 131 VMKLTDELRTEAQRRNIQETEDLREVIVEKIVEIYHQEDDHSEAMNIE-DGRLNVILMVG 189

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI QL +W +R   + V    GSD 
Sbjct: 190 VNGVGKTTTIGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDP 249

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LD
Sbjct: 250 AAVVYDAINAAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLD 309

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 310 ATTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDL 369

Query: 299 EPFVAKD-----FSAVITGCLDYGEE 319
           +PF  +      F+ +I    D  EE
Sbjct: 370 QPFNPESYVYGLFADMIEQNEDIPEE 395


>gi|213621992|ref|ZP_03374775.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 479

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 168 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 227

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 228 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 286

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 287 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 346

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 347 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 406

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 407 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 466

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 467 ADDFIEALFARED 479


>gi|157368470|ref|YP_001476459.1| signal recognition particle-docking protein FtsY [Serratia
           proteamaculans 568]
 gi|157320234|gb|ABV39331.1| signal recognition particle-docking protein FtsY [Serratia
           proteamaculans 568]
          Length = 535

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 124/316 (39%), Positives = 196/316 (62%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 221 VTQEQERPTKEGFFARLKRSLVKTKQNLGSGFIGLFRGKKIDDDLFEELEEQLLIADVGV 280

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P +    + P+VIL+VGV
Sbjct: 281 ETTRKIITSLTQHASRKQLKDAEALYGKLKEEMSEILAKVDQPLDVGGKN-PYVILMVGV 339

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A
Sbjct: 340 NGVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSA 399

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+ +LDA
Sbjct: 400 SVIFDAVQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDDQAPHEVMLILDA 459

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL 
Sbjct: 460 STGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFAIPIRYIGVGEGIEDLR 519

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 520 PFKADDFIEALFARED 535


>gi|91212953|ref|YP_542939.1| cell division protein FtsY [Escherichia coli UTI89]
 gi|218560532|ref|YP_002393445.1| cell division protein FtsY [Escherichia coli S88]
 gi|237703211|ref|ZP_04533692.1| cell division protein FtsY [Escherichia sp. 3_2_53FAA]
 gi|91074527|gb|ABE09408.1| cell division protein FtsY [Escherichia coli UTI89]
 gi|218367301|emb|CAR05079.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein ; conserved hypothetical protein [Escherichia
           coli S88]
 gi|226902475|gb|EEH88734.1| cell division protein FtsY [Escherichia sp. 3_2_53FAA]
 gi|294490549|gb|ADE89305.1| cell division protein FtsY [Escherichia coli IHE3034]
 gi|307628537|gb|ADN72841.1| cell division protein FtsY [Escherichia coli UM146]
 gi|315286125|gb|EFU45563.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 110-3]
 gi|323950132|gb|EGB46015.1| signal recognition particle-docking protein FtsY [Escherichia coli
           H252]
          Length = 498

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 124/316 (39%), Positives = 192/316 (60%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQN + Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNGVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|281180493|dbj|BAI56823.1| ABC transporter permease component [Escherichia coli SE15]
          Length = 498

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGLRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|324111785|gb|EGC05765.1| signal recognition particle-docking protein FtsY [Escherichia
           fergusonii B253]
          Length = 512

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 198 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 257

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 258 ETTRKIITNLTEGATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 316

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 317 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 376

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 377 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 436

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 437 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 496

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 497 PFKADDFIEALFARED 512


>gi|300936475|ref|ZP_07151395.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 21-1]
 gi|300458397|gb|EFK21890.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 21-1]
          Length = 504

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 190 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 249

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 250 ETTRKIITNLTEGATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGV 308

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 309 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 368

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 369 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 428

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 429 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 488

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 489 PFKADDFIEALFARED 504


>gi|197249122|ref|YP_002148494.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197212825|gb|ACH50222.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 491

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|59713060|ref|YP_205836.1| fused Signal recognition particle (SRP) receptor: membrane binding
           protein/ protein [Vibrio fischeri ES114]
 gi|59481161|gb|AAW86948.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Vibrio fischeri ES114]
          Length = 412

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 131/310 (42%), Positives = 201/310 (64%), Gaps = 1/310 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            +     + S+  +L +    T   +  G   + S +++DD + EELE+ L+ +D+G+  
Sbjct: 99  EEVQEKPTESFFARLKRSLQRTKENIGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDT 158

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             +I++ L  K   +D+     LY  + E + ++L  + +P   +  + PHVIL+VGVNG
Sbjct: 159 TVRIIDSLTEKASKQDLKDGEALYGLLKEEMAEILAKVEQPLEINEKNMPHVILMVGVNG 218

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+K+  + G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++
Sbjct: 219 VGKTTTIGKLAKQFQNEGKSVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASV 278

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A + A+A+KVDV+I DTAGRL N S LM  + K++RV+K++DP APH ++  LDA T
Sbjct: 279 IYDAIEAARARKVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDPSAPHEIMLTLDAGT 338

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ F+GVGEGI+DL PF
Sbjct: 339 GQNAISQAKLFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRFIGVGEGIDDLRPF 398

Query: 302 VAKDFSAVIT 311
           VA+DF   + 
Sbjct: 399 VAQDFIEALF 408


>gi|323974895|gb|EGB70006.1| signal recognition particle-docking protein FtsY [Escherichia coli
           TW10509]
          Length = 512

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 198 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 257

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 258 ETTRKIITNLTEGATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 316

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 317 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 376

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 377 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 436

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 437 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 496

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 497 PFKADDFIEALFARED 512


>gi|209883417|ref|YP_002287274.1| signal recognition particle-docking protein FtsY [Oligotropha
           carboxidovorans OM5]
 gi|209871613|gb|ACI91409.1| signal recognition particle-docking protein FtsY [Oligotropha
           carboxidovorans OM5]
          Length = 318

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 157/314 (50%), Positives = 216/314 (68%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M++        SW ++L+ G   TS  +   + D++  R+LD  + E++ED+L+R+D+G 
Sbjct: 1   MTDTPQDKSKQSWWQRLSAGLKRTSGSIGAAVADLVVKRKLDRAMLEDIEDVLLRADLGT 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            VA +I  ++   RY KDVS Q V   V+  + K+L P++ P   D S +P +ILVVGVN
Sbjct: 61  EVAARIAAKVGEGRYDKDVSAQDVQAIVAAEVEKVLAPVAMPLVIDESQKPFIILVVGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K +  G +VMLAAGDTFR+AAI+QLKIW +RT A  +  + GSDAA+
Sbjct: 121 GSGKTTTIGKLAAKFAAEGRRVMLAAGDTFRAAAIEQLKIWGERTGAPVIARDHGSDAAS 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++A   A+A   DVL+IDTAGRL N + LM  + K+ RV++++D  APH+VL VLDAT
Sbjct: 181 LAFDAASAAKADNRDVLLIDTAGRLQNKAELMVELEKVARVIRKVDTSAPHAVLLVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL QVE F   AG TGL+MTK+DGTARGG L+ I   +K+PV+F+GVGEG++DL P
Sbjct: 241 VGQNALSQVEAFRKTAGVTGLVMTKLDGTARGGILVAISEIYKLPVHFIGVGEGVDDLAP 300

Query: 301 FVAKDFSAVITGCL 314
           F A+DF+  I G  
Sbjct: 301 FTARDFAHAIAGKG 314


>gi|110643704|ref|YP_671434.1| cell division protein FtsY [Escherichia coli 536]
 gi|191170595|ref|ZP_03032148.1| cell division protein FtsY [Escherichia coli F11]
 gi|300987363|ref|ZP_07178171.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 200-1]
 gi|110345296|gb|ABG71533.1| cell division protein FtsY [Escherichia coli 536]
 gi|190909403|gb|EDV68989.1| cell division protein FtsY [Escherichia coli F11]
 gi|300306231|gb|EFJ60751.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 200-1]
 gi|324014562|gb|EGB83781.1| signal recognition particle-docking protein FtsY [Escherichia coli
           MS 60-1]
          Length = 498

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 244 ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 302

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 303 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 362

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 363 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 422

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 423 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 482

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 483 PFKADDFIEALFARED 498


>gi|157149052|ref|YP_001456371.1| cell division protein FtsY [Citrobacter koseri ATCC BAA-895]
 gi|157086257|gb|ABV15935.1| hypothetical protein CKO_04891 [Citrobacter koseri ATCC BAA-895]
          Length = 500

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 190/313 (60%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 189 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 248

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + +  +L  + +P N +    P VIL+VGVNGV
Sbjct: 249 RKIIANLTEGASRKQLHDAEALYGLLKDEMGDILAKVDEPLNIE-GKTPFVILMVGVNGV 307

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 308 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 367

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 368 FDAIQAAKARNVDVLIADTAGRLQNKAHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTG 427

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 428 QNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 487

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 488 ADDFIEALFARED 500


>gi|229508897|ref|ZP_04398387.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           B33]
 gi|229606695|ref|YP_002877343.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           MJ-1236]
 gi|227011852|gb|ACP08062.1| cell division protein FtsY [Vibrio cholerae O395]
 gi|229354014|gb|EEO18947.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           B33]
 gi|229369350|gb|ACQ59773.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           MJ-1236]
          Length = 389

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 78  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 137

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  +   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 138 KIIANLTARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 197

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 198 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 257

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 258 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 317

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 318 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 377

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 378 QEFIDALF 385


>gi|121587716|ref|ZP_01677477.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           2740-80]
 gi|121548015|gb|EAX58093.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           2740-80]
          Length = 395

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 84  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 143

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  +   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 144 KIIANLTARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 203

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 204 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 263

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 264 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 323

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 324 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 383

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 384 QEFIDALF 391


>gi|15640178|ref|NP_229805.1| cell division protein FtsY [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|229517011|ref|ZP_04406457.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           RC9]
 gi|255743904|ref|ZP_05417859.1| signal recognition particle receptor protein FtsY [Vibrio cholera
           CIRS 101]
 gi|9654548|gb|AAF93324.1| cell division protein FtsY [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|229346074|gb|EEO11046.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           RC9]
 gi|255738387|gb|EET93777.1| signal recognition particle receptor protein FtsY [Vibrio cholera
           CIRS 101]
          Length = 391

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 80  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 139

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  +   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 140 KIIANLTARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 199

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 200 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 259

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 260 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 319

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 320 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 379

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 380 QEFIDALF 387


>gi|227080382|ref|YP_002808933.1| cell division protein FtsY [Vibrio cholerae M66-2]
 gi|254851533|ref|ZP_05240883.1| cell division protein FtsY [Vibrio cholerae MO10]
 gi|262151142|ref|ZP_06028281.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           INDRE 91/1]
 gi|262167011|ref|ZP_06034728.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           RC27]
 gi|298501091|ref|ZP_07010891.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           MAK 757]
 gi|227008270|gb|ACP04482.1| cell division protein FtsY [Vibrio cholerae M66-2]
 gi|254847238|gb|EET25652.1| cell division protein FtsY [Vibrio cholerae MO10]
 gi|262024529|gb|EEY43213.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           RC27]
 gi|262031036|gb|EEY49661.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           INDRE 91/1]
 gi|297540125|gb|EFH76186.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           MAK 757]
          Length = 393

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 82  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 141

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  +   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 142 KIIANLTARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 201

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 202 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 261

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 262 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 321

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 322 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 381

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 382 QEFIDALF 389


>gi|147673157|ref|YP_001218274.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           O395]
 gi|229508422|ref|ZP_04397926.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           BX 330286]
 gi|146315040|gb|ABQ19579.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           O395]
 gi|229354695|gb|EEO19617.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           BX 330286]
          Length = 387

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 76  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 135

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  +   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 136 KIIANLTARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 195

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 196 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 255

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 256 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 315

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 316 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 375

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 376 QEFIDALF 383


>gi|121728299|ref|ZP_01681330.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           V52]
 gi|121629429|gb|EAX61858.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           V52]
          Length = 397

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 86  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 145

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  +   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 146 KIIANLTARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 205

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 206 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 265

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 266 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 325

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 326 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 385

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 386 QEFIDALF 393


>gi|103488209|ref|YP_617770.1| signal recognition particle-docking protein FtsY [Sphingopyxis
           alaskensis RB2256]
 gi|98978286|gb|ABF54437.1| signal recognition particle-docking protein FtsY [Sphingopyxis
           alaskensis RB2256]
          Length = 308

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 137/302 (45%), Positives = 192/302 (63%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            SW  +L  GF  TS +L E +  +    RLD+   + +E+ LI +D+G A+A +I + L
Sbjct: 4   KSWSERLLGGFRRTSERLGENLAGLTGKARLDEADLDRIEEALITADLGPAMAARIRDRL 63

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +R       + +   V++ I  +L P+++P + D   RP VILV+GVNG GKTT I K
Sbjct: 64  AERRDVAANGTEELRQIVADEIAAVLRPVAEPLDIDAFPRPQVILVIGVNGSGKTTTIAK 123

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+    +    VML AGDTFR+AAI QLKIWA+R     +    G D+A + ++A K+A 
Sbjct: 124 LAHLFQEQDYGVMLVAGDTFRAAAIGQLKIWAERLGVPIMAGPEGGDSAGIVFDAVKRAT 183

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A  +DVLI+DTAGRL N   LM  + K+ RVL RL+P APH V+ VLDATTGQNAL Q++
Sbjct: 184 ATGIDVLIVDTAGRLQNKRELMDELAKIKRVLGRLNPAAPHDVVLVLDATTGQNALSQID 243

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  VAG TGL+MTK+DGTARGG L+     H +P++ +G+GE + DL PF A + + +I
Sbjct: 244 VFREVAGVTGLVMTKLDGTARGGVLVAAAERHGLPIHAIGIGETMEDLRPFDADEIAGII 303

Query: 311 TG 312
            G
Sbjct: 304 AG 305


>gi|323966128|gb|EGB61565.1| signal recognition particle-docking protein FtsY [Escherichia coli
           M863]
 gi|327251100|gb|EGE62793.1| signal recognition particle-docking protein FtsY [Escherichia coli
           STEC_7v]
          Length = 512

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 198 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 257

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 258 ETTRKIITNLTEGATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 316

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 317 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 376

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 377 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 436

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 437 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 496

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 497 PFKADDFIEALFARED 512


>gi|167561478|ref|ZP_02354394.1| signal recognition particle-docking protein FtsY [Burkholderia
           oklahomensis EO147]
          Length = 434

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 124/304 (40%), Positives = 182/304 (59%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SW+ +L  G A TS      IT++  + ++D+ + EELE  L+ SD G+   + +++ 
Sbjct: 137 KKSWLARLKSGLAKTS----SSITNVFVNTKIDEALYEELETALLMSDAGIDATEHLLDA 192

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K     ++  + + D +  L+  +L PL K      +  P V+++ GVNG GKTT I
Sbjct: 193 LREKVRTGRLTDPQQVKDALRGLLVDLLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSI 251

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 252 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 310

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQN L Q
Sbjct: 311 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNGLAQ 370

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++F+ 
Sbjct: 371 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFAD 430

Query: 309 VITG 312
            + G
Sbjct: 431 ALLG 434


>gi|229515823|ref|ZP_04405281.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           TMA 21]
 gi|229347086|gb|EEO12047.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           TMA 21]
          Length = 391

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 80  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 139

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 140 KIIANLTAKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 199

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 200 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 259

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 260 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 319

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 320 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 379

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 380 QEFIDALF 387


>gi|153830010|ref|ZP_01982677.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           623-39]
 gi|148874495|gb|EDL72630.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           623-39]
          Length = 385

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 74  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 133

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 134 KIIANLTAKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 193

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 194 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 253

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 254 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 313

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 314 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 373

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 374 QEFIDALF 381


>gi|153803614|ref|ZP_01958200.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           MZO-3]
 gi|124120853|gb|EAY39596.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           MZO-3]
          Length = 391

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 80  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 139

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 140 KIIANLTAKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 199

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 200 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 259

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 260 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 319

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 320 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 379

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 380 QEFIDALF 387


>gi|152987106|ref|YP_001345863.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           PA7]
 gi|150962264|gb|ABR84289.1| cell division protein FtsY [Pseudomonas aeruginosa PA7]
          Length = 447

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 186/302 (61%), Gaps = 2/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEEL 70
            +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L
Sbjct: 140 GFFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL 199

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 200 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 259

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 260 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 319

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 320 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 379

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F   
Sbjct: 380 RQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQA 439

Query: 310 IT 311
           + 
Sbjct: 440 LF 441


>gi|254671832|emb|CBA03981.1| cell division protein [Neisseria meningitidis alpha275]
          Length = 350

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 115/298 (38%), Positives = 183/298 (61%), Gaps = 2/298 (0%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +++++  + 
Sbjct: 53  ARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYLMKDVRDRV 112

Query: 75  YAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT IGKL+K
Sbjct: 113 SLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAK 172

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A + A+A+ 
Sbjct: 173 YFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDAVQAAKARG 231

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA+ QV+ F 
Sbjct: 232 IDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFD 291

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ F   + 
Sbjct: 292 DALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARAFVDALL 349


>gi|218550726|ref|YP_002384517.1| cell division protein FtsY [Escherichia fergusonii ATCC 35469]
 gi|218358267|emb|CAQ90914.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein ; conserved hypothetical protein [Escherichia
           fergusonii ATCC 35469]
          Length = 512

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 198 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 257

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 258 ETTRKIITNLTEGATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 316

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 317 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 376

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 377 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 436

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 437 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 496

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 497 PFKADDFIEALFARED 512


>gi|261379167|ref|ZP_05983740.1| signal recognition particle-docking protein FtsY [Neisseria cinerea
           ATCC 14685]
 gi|269144353|gb|EEZ70771.1| signal recognition particle-docking protein FtsY [Neisseria cinerea
           ATCC 14685]
          Length = 347

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 186/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 42  EEHKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 101

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + + ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 102 MKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 161

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 162 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 220

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 221 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 280

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 281 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 340

Query: 306 FSAVIT 311
           F   + 
Sbjct: 341 FVDALL 346


>gi|323702683|ref|ZP_08114344.1| signal recognition particle-docking protein FtsY [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532346|gb|EGB22224.1| signal recognition particle-docking protein FtsY [Desulfotomaculum
           nigrificans DSM 574]
          Length = 309

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 137/310 (44%), Positives = 194/310 (62%), Gaps = 3/310 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +  A T     E I  + + R+ +D+ + E+LE++LI++D+GV  A  +VE 
Sbjct: 1   MGFFSRLKESLAKTRETFVEKIDQVFTGRKGIDEELYEDLEEVLIQADVGVQTAMTLVER 60

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +     A++V     L D+  E +  ++     P N +    P VI+VVGVNGVGKTT I
Sbjct: 61  VRKGVKARNVQDPARLKDIFQEELEYLMGDKISPINTNPDG-PTVIMVVGVNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++    + G KV+LAAGDTFR+AAIDQL+IWADR   D +  + G+D  A+AY+A   
Sbjct: 120 GKMAHNYKEQGKKVLLAAGDTFRAAAIDQLEIWADRVGVDIIKHQEGADPGAVAYDAVHA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+++K DVL+IDTAGRLHN   LM  + K+ R++ R  P APH VL VLDATTGQNAL Q
Sbjct: 180 ARSRKADVLLIDTAGRLHNKGHLMEELRKVHRIIAREMPGAPHEVLLVLDATTGQNALSQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F      TG+ +TK+DGTA+GG +  IV    IPV  +G+GE ++DL PF  KDF A
Sbjct: 240 AKIFSEAVNVTGIALTKLDGTAKGGVITAIVTEMAIPVKLIGIGERMDDLRPFNPKDFIA 299

Query: 309 VITGCLDYGE 318
            + G     E
Sbjct: 300 ALYGLNKEDE 309


>gi|241760701|ref|ZP_04758793.1| cell division protein FtsY [Neisseria flavescens SK114]
 gi|241318882|gb|EER55408.1| cell division protein FtsY [Neisseria flavescens SK114]
          Length = 510

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 188/311 (60%), Gaps = 2/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +   V    LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+ 
Sbjct: 200 APAPVEEHKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGME 259

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             + +++++  +   K +     L   + + ++ ++ PL KP     +  P VI++ G+N
Sbjct: 260 ATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGIN 319

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA
Sbjct: 320 GAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAA 378

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA 
Sbjct: 379 VCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDAN 438

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNA+ QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL P
Sbjct: 439 IGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRP 498

Query: 301 FVAKDFSAVIT 311
           F AK F   + 
Sbjct: 499 FNAKAFVDALL 509


>gi|194427035|ref|ZP_03059587.1| cell division protein FtsY [Escherichia coli B171]
 gi|194414996|gb|EDX31266.1| cell division protein FtsY [Escherichia coli B171]
          Length = 497

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 124/316 (39%), Positives = 192/316 (60%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 183 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 242

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 243 ETTRKIITNLTEDASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 301

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 302 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD   PH V+  +DA
Sbjct: 362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVETPHEVMLTIDA 421

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 422 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 481

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 482 PFKADDFIEALFARED 497


>gi|325983559|ref|YP_004295961.1| signal recognition particle-docking protein FtsY [Nitrosomonas sp.
           AL212]
 gi|325533078|gb|ADZ27799.1| signal recognition particle-docking protein FtsY [Nitrosomonas sp.
           AL212]
          Length = 341

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 126/319 (39%), Positives = 190/319 (59%), Gaps = 9/319 (2%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           + ++   +ES+S+  KL +G + T   L + ++ +    ++D+ + EELE +L+ SDIGV
Sbjct: 23  VESESPPAESISFASKLKQGLSRTRQNLGQQLSGLFGGGKIDEELYEELETILLTSDIGV 82

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               +++E L  +     ++    L   + E +  ML PL++  +    H+P VI++ GV
Sbjct: 83  NATHQLLENLRKQVKRNALTDSIQLKHALKESLIAMLEPLAQSLDT-TRHKPFVIMIAGV 141

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---- 175
           NGVGKTT IGKL+K     G  V+LAAGDTFR+AA +QL  W +R +   +  +      
Sbjct: 142 NGVGKTTSIGKLAKFFQTQGHSVLLAAGDTFRAAAREQLIAWGERNNVTVIAPDSDPDKK 201

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A   A+A+ +D+++ DTAGRL     LM  I K+ RV+ +  P APH VL 
Sbjct: 202 SDPAAVIYDAVNSAKARGIDIVLADTAGRLTTQLHLMEEIKKVKRVIAKAMPDAPHEVLL 261

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH--KIP-VYFLGVG 292
           VLDA TGQNA+ QV  F      TGLI+TK+DGTA+GG +  I   +    P + F+GVG
Sbjct: 262 VLDANTGQNAITQVSAFDDALNVTGLILTKLDGTAKGGVVAAIAGQYPENPPALRFIGVG 321

Query: 293 EGINDLEPFVAKDFSAVIT 311
           EG++DL PF A++F   + 
Sbjct: 322 EGLDDLRPFEAREFVEALL 340


>gi|237728779|ref|ZP_04559260.1| cell division protein FtsY [Citrobacter sp. 30_2]
 gi|226909401|gb|EEH95319.1| cell division protein FtsY [Citrobacter sp. 30_2]
          Length = 508

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 127/307 (41%), Positives = 189/307 (61%), Gaps = 2/307 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
              +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  
Sbjct: 203 KEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIIAN 262

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      K +     LY  + E + ++L  + +P N D    P VIL+VGVNGVGKTT I
Sbjct: 263 LTEGASRKQLKDAEALYGLLKEEMGEILAKVDEPLNVD-GKTPFVILMVGVNGVGKTTTI 321

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + 
Sbjct: 322 GKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 381

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q
Sbjct: 382 AKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTGQNAISQ 441

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF  
Sbjct: 442 AKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIE 501

Query: 309 VITGCLD 315
            +    D
Sbjct: 502 ALFARED 508


>gi|254291953|ref|ZP_04962734.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           AM-19226]
 gi|150422163|gb|EDN14129.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           AM-19226]
          Length = 389

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 78  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 137

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 138 KIIANLTAKASRQQLRDGEALYGLLKEEMAEILSQVEQPLLIDTEKKPYVILMVGVNGVG 197

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 198 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 257

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 258 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 317

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 318 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 377

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 378 QEFIDALF 385


>gi|224585363|ref|YP_002639162.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469891|gb|ACN47721.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 491

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|260550345|ref|ZP_05824557.1| signal recognition particle GTPase [Acinetobacter sp. RUH2624]
 gi|260406657|gb|EEX00138.1| signal recognition particle GTPase [Acinetobacter sp. RUH2624]
          Length = 368

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 134/312 (42%), Positives = 198/312 (63%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
            + +       +  ++ +G + T     +G+ +I I  + +DD + EE+E+ L+ +DIGV
Sbjct: 53  PSTEPEQPKSGFFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGV 112

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGV
Sbjct: 113 DATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGV 172

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A
Sbjct: 173 NGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSA 232

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++AF+ A+AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA
Sbjct: 233 SVIFDAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDA 292

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ QV+ F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL 
Sbjct: 293 GTGQNAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLR 352

Query: 300 PFVAKDFSAVIT 311
           PF AK F A + 
Sbjct: 353 PFSAKSFVAALF 364


>gi|313901969|ref|ZP_07835385.1| signal recognition particle-docking protein FtsY [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467758|gb|EFR63256.1| signal recognition particle-docking protein FtsY [Thermaerobacter
           subterraneus DSM 13965]
          Length = 311

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 134/300 (44%), Positives = 184/300 (61%), Gaps = 2/300 (0%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             KL  G A T  +L   I  ++    LD+ + EELE +LI +D+GVA  Q+++E L  +
Sbjct: 3   WSKLKAGLARTREQLAGRIRAVVQGAALDEALFEELEAVLITADVGVATTQRLLERLRER 62

Query: 74  RYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKL 131
             A+ V     +   ++E +  ML  ++ P           VILVVGVNG GKTT +GKL
Sbjct: 63  VRAEGVRDAAAVPGLLAEEMRGMLEAVAAPPAAPGRGPGPLVILVVGVNGSGKTTTVGKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KV++ A DTFR+AAIDQL+ W  R  AD V    G+D AA+A++A + AQA
Sbjct: 123 AARYRQEGWKVVVGAADTFRAAAIDQLERWCQRAGADLVRQHPGADPAAVAFDALQAAQA 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVL++DTAGRLH    LM  + K  RVL+RLDP APH VL VLDATTGQNAL Q   
Sbjct: 183 RGADVLLVDTAGRLHTRVNLMEELRKTQRVLQRLDPTAPHEVLLVLDATTGQNALAQARH 242

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TG+++TK+DGTARGG ++ I    ++PV ++G GEG +DL PF   +F+  + 
Sbjct: 243 FTEAVGVTGIVLTKLDGTARGGMVVAIADQLRLPVKWVGTGEGADDLAPFDPGEFTRALF 302


>gi|325499013|gb|EGC96872.1| cell division protein FtsY [Escherichia fergusonii ECD227]
          Length = 512

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 198 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 257

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 258 ETTRKIITNLTEGATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 316

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 317 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 376

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 377 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 436

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 437 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 496

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 497 PFKADDFIEALFARED 512


>gi|329113597|ref|ZP_08242377.1| Cell division protein FtsY-like protein [Acetobacter pomorum DM001]
 gi|326697119|gb|EGE48780.1| Cell division protein FtsY-like protein [Acetobacter pomorum DM001]
          Length = 309

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 145/306 (47%), Positives = 214/306 (69%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +L +  +L +G + ++ KL  GIT I + R+LDD   EELEDLLI +D+G AVA++I+E 
Sbjct: 2   ALGFFSRLKQGLSRSTQKLGGGITGIFTKRKLDDEALEELEDLLITADMGPAVAERIIES 61

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             + R+  +V+ + +   +++ I  +L P++KPF  D  H+PHV+L+VGVNGVGKTT IG
Sbjct: 62  FRSSRFGTEVTDEEIRTTLADEIAAILEPVAKPFEPDPEHKPHVVLMVGVNGVGKTTTIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+++  ++ G KVM+ AGDTFR+AA++QL+IW +RT    +    G+DAA LA+EA K+ 
Sbjct: 122 KMARFFTEEGKKVMMVAGDTFRAAAVEQLQIWGERTGCPVIAGPPGADAAGLAFEALKRG 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D+L +DTAGRLHN S LM  + K+IRV+++ D  APHSVL VLDATTGQNA+ QV
Sbjct: 182 KAEGADLLFVDTAGRLHNKSALMEELAKIIRVMRKFDETAPHSVLLVLDATTGQNAVEQV 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  +   TGL++TK+DG+ARGG ++ +     +PV+ +GVGE   DL PF A D++  
Sbjct: 242 RVFRELVNVTGLVVTKLDGSARGGIVVALADQFGLPVHAVGVGEQAEDLRPFSAVDYARG 301

Query: 310 ITGCLD 315
           + G  D
Sbjct: 302 LVGVTD 307


>gi|167568708|ref|ZP_02361582.1| signal recognition particle-docking protein FtsY [Burkholderia
           oklahomensis C6786]
          Length = 366

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 125/307 (40%), Positives = 183/307 (59%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +   SW+ +L  G A TS      IT++  + ++D+ + EELE  L+ SD GV   + +
Sbjct: 66  PAAKQSWLARLKSGLAKTS----SSITNVFVNTKIDEALYEELETALLMSDAGVDATEHL 121

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++ L  K     ++  + + D +  L+  +L PL K      +  P V+++ GVNG GKT
Sbjct: 122 LDALREKVRTGRLTDPQQVKDALRGLLVDLLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKT 180

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A
Sbjct: 181 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDA 239

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQN 
Sbjct: 240 VSAARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNG 299

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++
Sbjct: 300 LAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEE 359

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 360 FADALLG 366


>gi|84515411|ref|ZP_01002773.1| Signal recognition particle-docking protein FtsY [Loktanella
           vestfoldensis SKA53]
 gi|84510694|gb|EAQ07149.1| Signal recognition particle-docking protein FtsY [Loktanella
           vestfoldensis SKA53]
          Length = 323

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 135/322 (41%), Positives = 207/322 (64%), Gaps = 20/322 (6%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-------------------RRLDDGVREELED 51
           +++  KL +    +S K+  G+  I++                    R LDD + EELED
Sbjct: 1   MAFFSKLKERMFKSSAKIDAGLDAIVAEPAPKPGLIGRLLAPTEAQRRALDDAMLEELED 60

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           LLI +D+GV  AQ+++  +      K VSV+ V   +   + +++ P+++P    ++  P
Sbjct: 61  LLIAADMGVETAQRVIANIAEGHLGKRVSVEEVKRLLMAEVVRIMEPVARPLPI-YAKTP 119

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL++W  R     + 
Sbjct: 120 QVVLVVGVNGSGKTTTIGKLASQFRAAGKNVVIAAGDTFRAAAVEQLQVWGQRAGVPVLT 179

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +  GSD A+LAY+A  +AQA   D+L+IDTAGRL N + LM  + K++RV+++ DP APH
Sbjct: 180 APEGSDPASLAYDAMTKAQADGADLLMIDTAGRLQNRADLMEELSKIVRVIRKKDPDAPH 239

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
           +VL VLDATTGQNA++QV++F  +A  +GL+MTK+DGTA+GG L+ +     +P++ +GV
Sbjct: 240 NVLLVLDATTGQNAVQQVKVFQELAAVSGLVMTKLDGTAKGGVLVSLADRFGLPIHAIGV 299

Query: 292 GEGINDLEPFVAKDFSAVITGC 313
           GE I+DL PF  ++F+A + G 
Sbjct: 300 GEQIDDLAPFDPEEFAAALVGL 321


>gi|297517807|ref|ZP_06936193.1| cell division protein FtsY [Escherichia coli OP50]
          Length = 336

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 22  IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 81

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 82  ETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGV 140

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 141 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 200

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 201 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 260

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 261 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 320

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 321 PFKADDFIEALFARED 336


>gi|78355607|ref|YP_387056.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218012|gb|ABB37361.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 506

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 118/301 (39%), Positives = 180/301 (59%), Gaps = 5/301 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             KL++G   T  ++   I  ++S+ +++D+   EELE++LI +D+G   A ++V  L  
Sbjct: 207 FLKLSEGLTRTKEQITRRIDGLLSAHKQIDEAFWEELEEILIMADVGYEPAMELVGRLRA 266

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A       +     EL+ + L  +   P      + P V+L+VGVNGVGKTT I KL
Sbjct: 267 RVRASGSDDPALFK---ELMREELEDIFRTPRRIAAINPPEVVLMVGVNGVGKTTTIAKL 323

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KV++AAGDTFR+AAI+QLK+WADR  A F      +D AA+AYEA  +A  
Sbjct: 324 AYRARLQGKKVLIAAGDTFRAAAIEQLKVWADRVGAGFHSKGANADPAAVAYEAMDKAVK 383

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+L +DTAGR+H    LM  + K+  VL +  P APH  + V+DATTGQNAL Q  +
Sbjct: 384 EGYDILFVDTAGRIHTKVNLMEELQKIRGVLGKKHPGAPHRSILVIDATTGQNALSQTRL 443

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +++TK+DGTA+GG ++ + +   IP+ ++G+GE + DL PF  +DF+  + 
Sbjct: 444 FDESCKLDEIVLTKLDGTAKGGIVVAVAMQFGIPITYVGLGEKMEDLRPFDGRDFAQALL 503

Query: 312 G 312
           G
Sbjct: 504 G 504


>gi|146309189|ref|YP_001189654.1| signal recognition particle-docking protein FtsY [Pseudomonas
           mendocina ymp]
 gi|145577390|gb|ABP86922.1| signal recognition particle-docking protein FtsY [Pseudomonas
           mendocina ymp]
          Length = 475

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 128/307 (41%), Positives = 196/307 (63%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65
             +  S+  +L +G + TS  L EG+  +   ++ +DD + ++LE  L+ +D+GV     
Sbjct: 163 TQDKPSFFARLKQGLSKTSASLGEGMASLFLGKKAIDDDLLDDLETRLLTADVGVEATTT 222

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I+  L  +   K+++    LY  + E +  +L P+ +P   D + +P+VILVVGVNGVGK
Sbjct: 223 IIGNLTKRVARKELADSGALYKALQEELVTLLKPVEQPLVIDSAKQPYVILVVGVNGVGK 282

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ ++
Sbjct: 283 TTTIGKLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNNIAVIAQHTGADSASVIFD 342

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+++ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQN
Sbjct: 343 AVQAAKSRGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQN 402

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q + F      TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL PF A+
Sbjct: 403 AISQAKQFDQTVNLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRPFEAQ 462

Query: 305 DFSAVIT 311
            F   + 
Sbjct: 463 AFVQALF 469


>gi|170766837|ref|ZP_02901290.1| cell division protein FtsY [Escherichia albertii TW07627]
 gi|170124275|gb|EDS93206.1| cell division protein FtsY [Escherichia albertii TW07627]
          Length = 504

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 190 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 249

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + +P N +    P VIL+VGV
Sbjct: 250 ETTRKIITNLTEGATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGV 308

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 309 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 368

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 369 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 428

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 429 STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 488

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 489 PFKADDFIEALFARED 504


>gi|153826285|ref|ZP_01978952.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           MZO-2]
 gi|149739953|gb|EDM54132.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           MZO-2]
          Length = 395

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 84  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 143

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 144 KIIANLTAKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 203

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 204 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 263

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 264 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 323

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DG+A+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 324 NAISQAKLFSDVAPITGITLTKLDGSAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 383

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 384 QEFIDALF 391


>gi|254247170|ref|ZP_04940491.1| Signal recognition particle GTPase [Burkholderia cenocepacia PC184]
 gi|124871946|gb|EAY63662.1| Signal recognition particle GTPase [Burkholderia cenocepacia PC184]
          Length = 413

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 187/309 (60%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   +
Sbjct: 111 QDASAKKSWLARLKTGLAKT----GSSITGVFVNTKIDEDLYEELETALLMSDAGVDATE 166

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +++ L  K  A  ++  + + D + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 167 YLLDALREKVRAGRLTDPQQVKDALHDLLVELLTPLEKSLMLGRAQ-PLVMMITGVNGAG 225

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 226 KTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV-QQESGDPAAVIF 284

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 285 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQ 344

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 345 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSA 404

Query: 304 KDFSAVITG 312
            +F+  + G
Sbjct: 405 VEFADALLG 413


>gi|311277611|ref|YP_003939842.1| signal recognition particle-docking protein FtsY [Enterobacter
           cloacae SCF1]
 gi|308746806|gb|ADO46558.1| signal recognition particle-docking protein FtsY [Enterobacter
           cloacae SCF1]
          Length = 475

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 124/316 (39%), Positives = 192/316 (60%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +  ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 161 VQQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 220

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGV
Sbjct: 221 ETTRKIIANLTEGASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGV 279

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 280 NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 339

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA
Sbjct: 340 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDA 399

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL 
Sbjct: 400 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 459

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 460 PFKADDFIEALFARED 475


>gi|293391631|ref|ZP_06635965.1| cell division protein FtsY [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952165|gb|EFE02284.1| cell division protein FtsY [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 390

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 192/312 (61%), Gaps = 2/312 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +  Q+  SE   +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV
Sbjct: 75  VETQEKPSEG-GFFSRLLKGLVKTKQNIGAGFRSFFLGKKIDDDLFEELEEQLLIADIGV 133

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               KI+  L      + +     LY  +   + ++L P+++P   D S +P+VIL+VGV
Sbjct: 134 PTTSKIINNLTQHATRQQLQNADSLYQQLKLEMGEILKPVAQPLCIDGSKKPYVILMVGV 193

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A
Sbjct: 194 NGVGKTTTIGKLARKFQMEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSA 253

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA
Sbjct: 254 SVIFDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDA 313

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL 
Sbjct: 314 GTGQNAISQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLR 373

Query: 300 PFVAKDFSAVIT 311
            F A++F   + 
Sbjct: 374 EFNAEEFIEALF 385


>gi|261866873|ref|YP_003254795.1| cell division protein FtsY [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412205|gb|ACX81576.1| cell division protein FtsY [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 453

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 126/312 (40%), Positives = 193/312 (61%), Gaps = 2/312 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +  Q+  SE   +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV
Sbjct: 137 VETQEKPSEG-GFFSRLLKGLVKTKQNIGAGFRSFFLGKKIDDDLFEELEEQLLIADIGV 195

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               KI+  L      + +     LY  +   + ++L P+++P + D S +P+VIL+VGV
Sbjct: 196 PTTTKIINNLTQHATRQQLQNADSLYQQLKLEMGEILKPVAQPLHIDGSKKPYVILMVGV 255

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A
Sbjct: 256 NGVGKTTTIGKLARKFQMEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSA 315

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA
Sbjct: 316 SVIFDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDA 375

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL 
Sbjct: 376 GTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLR 435

Query: 300 PFVAKDFSAVIT 311
            F A++F   + 
Sbjct: 436 EFNAEEFIEALF 447


>gi|229520064|ref|ZP_04409492.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           TM 11079-80]
 gi|229342852|gb|EEO07842.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           TM 11079-80]
          Length = 395

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 84  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 143

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 144 KIIANLTAKASRQQLRDGEALYGLLKEEMAEILSQVEQPLLIDTEKKPYVILMVGVNGVG 203

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 204 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 263

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 264 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 323

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 324 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGENIDDLRPFAT 383

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 384 QEFIDALF 391


>gi|169827096|ref|YP_001697254.1| cell division protein ftsY-like protein [Lysinibacillus sphaericus
           C3-41]
 gi|168991584|gb|ACA39124.1| Cell division protein ftsY-like protein [Lysinibacillus sphaericus
           C3-41]
          Length = 448

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 125/321 (38%), Positives = 186/321 (57%), Gaps = 9/321 (2%)

Query: 3   NQKVASESL----SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSD 57
            ++ A E      S  +K   G   T       + D+++  R++D+   EELEDLL+++D
Sbjct: 118 EEQPAEEKKPSAWSITQKFKAGLEKTRNSFTSKVNDLVARYRKVDEDFFEELEDLLLQAD 177

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSK---PFNWDFSHRPHV 113
           +G     +++++L  +   K++     +  + SE + ++     +     N        V
Sbjct: 178 VGFETVMELMDKLRFEVQRKNIKDTNGIQTLISEKLVEIYEQGEEDLIELNMQPDGELTV 237

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL VGVNGVGKTT IGKL+ ++   G  V+LAAGDTFR+ AIDQL++W DR   + +   
Sbjct: 238 ILFVGVNGVGKTTTIGKLAHRLKSQGKTVVLAAGDTFRAGAIDQLQVWGDRVGCEVIKQS 297

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            GSD AA+ Y+A + A+ +K DVLI DTAGRL N   LM  + K+ RV+ R  P APH V
Sbjct: 298 EGSDPAAVMYDAIRAAKNRKADVLICDTAGRLQNKVNLMNELEKVHRVISREIPSAPHEV 357

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L  LDATTGQNAL Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE
Sbjct: 358 LLALDATTGQNALVQAQTFKEATNVTGIVLTKLDGTAKGGIVLAIRNKLHIPVKFVGLGE 417

Query: 294 GINDLEPFVAKDFSAVITGCL 314
            ++DL+PF A+ +   +    
Sbjct: 418 KMDDLQPFDAERYVYGLFADG 438


>gi|56415470|ref|YP_152545.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364399|ref|YP_002144036.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129727|gb|AAV79233.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095876|emb|CAR61450.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 491

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 AGDFIEALFARED 491


>gi|21243285|ref|NP_642867.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108823|gb|AAM37403.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 554

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  LI +D+G+     +++
Sbjct: 251 KPGWRERLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALID 304

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  +++ V  Q +   +   +  +L P+SKP   D S +P V+L VGVNGVGKTT 
Sbjct: 305 GLRKRMKSREFVDAQAMFKALRADLIALLQPVSKPLVIDRSLKPFVVLTVGVNGVGKTTT 364

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W DR     +     +DAA++A++A +
Sbjct: 365 IGKLAKRFKDEGNSLMLAAGDTFRAAAVAQLQAWGDRNGVAVIAQGQNADAASVAFDALQ 424

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DVLI DTAGRLH  + LM  +GK+ RVL ++D  APH VL V+D TTGQNA+ 
Sbjct: 425 AAKARGTDVLIADTAGRLHTQTGLMNELGKIRRVLGKIDAAAPHEVLMVIDGTTGQNAIS 484

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F    F 
Sbjct: 485 QLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFNIPIRFAGIGERPEDLRVFDPVAFV 544

Query: 308 AVIT 311
             + 
Sbjct: 545 DALL 548


>gi|261210150|ref|ZP_05924447.1| signal recognition particle receptor protein FtsY [Vibrio sp.
           RC341]
 gi|260840690|gb|EEX67239.1| signal recognition particle receptor protein FtsY [Vibrio sp.
           RC341]
          Length = 388

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 77  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTT 136

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 137 KIITNLTAKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 196

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 197 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 256

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 257 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 316

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 317 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 376

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 377 QEFIDALF 384


>gi|254243472|ref|ZP_04936794.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           2192]
 gi|126196850|gb|EAZ60913.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           2192]
          Length = 362

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 187/302 (61%), Gaps = 2/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-LIRSDIGVAVAQKIVEEL 70
            +  +L +G + TS  + EG+  +   R+  D    +  +  L+ +D+GV     IV+ L
Sbjct: 55  GFFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNL 114

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K+++    LY  + E +  +L P+ +P   D +  P+VILVVGVNGVGKTT IG
Sbjct: 115 TKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIG 174

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + A
Sbjct: 175 KLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAA 234

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q 
Sbjct: 235 KARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQA 294

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A  F   
Sbjct: 295 KQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQA 354

Query: 310 IT 311
           + 
Sbjct: 355 LF 356


>gi|251810665|ref|ZP_04825138.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876333|ref|ZP_06285200.1| signal recognition particle-docking protein FtsY [Staphylococcus
           epidermidis SK135]
 gi|251805825|gb|EES58482.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295358|gb|EFA87885.1| signal recognition particle-docking protein FtsY [Staphylococcus
           epidermidis SK135]
          Length = 408

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 131/326 (40%), Positives = 192/326 (58%), Gaps = 13/326 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 73  EEIEAQKIG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 130

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKML---MPLSKPFNWDFSHRPHVILVVG 118
             K+ +EL T+   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 131 VMKLTDELRTEAQRRNIQETEDLREVIVEKIVEIYHQEDDHSEAMNIE-DGRLNVILMVG 189

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI QL +W +R   + V    GSD 
Sbjct: 190 VNGVGKTTTIGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDP 249

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LD
Sbjct: 250 AAVVYDAINAAKNKDVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLD 309

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 310 ATTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDL 369

Query: 299 EPFVAKD-----FSAVITGCLDYGEE 319
           +PF  +      F+ +I    D  EE
Sbjct: 370 QPFNPESYVYGLFADMIEQNEDIPEE 395


>gi|283835857|ref|ZP_06355598.1| cell division protein FtsY [Citrobacter youngae ATCC 29220]
 gi|291068030|gb|EFE06139.1| cell division protein FtsY [Citrobacter youngae ATCC 29220]
          Length = 494

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 183 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 242

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 243 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNVE-GKTPFVILMVGVNGV 301

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R S   +    G+D+A++ 
Sbjct: 302 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNSIPVIAQHTGADSASVI 361

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 362 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEVMLTIDASTG 421

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 422 QNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 481

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 482 ADDFIEALFARED 494


>gi|295097062|emb|CBK86152.1| signal recognition particle-docking protein FtsY [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 486

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 175 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 234

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 235 RKIIANLTEGASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKMPFVILMVGVNGV 293

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 294 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 353

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+++ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH ++  +DA+TG
Sbjct: 354 FDAIQAAKSRNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTIDASTG 413

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 414 QNAISQAKLFHEAVGLTGIALTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 473

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 474 ADDFIEALFARED 486


>gi|297581816|ref|ZP_06943737.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           RC385]
 gi|297533910|gb|EFH72750.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           RC385]
          Length = 397

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 86  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 145

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 146 KIIANLTAKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 205

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 206 KTTTIGKLAKQFQAQGEKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 265

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 266 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 325

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 326 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 385

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 386 QEFIDALF 393


>gi|289550985|ref|YP_003471889.1| Signal recognition particle receptor protein FtsY, alpha subunit
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180517|gb|ADC87762.1| Signal recognition particle receptor protein FtsY, alpha subunit
           [Staphylococcus lugdunensis HKU09-01]
          Length = 353

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 126/321 (39%), Positives = 188/321 (58%), Gaps = 7/321 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 18  EEIEAQKIG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 75

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNW--DFSHRPHVILVVGV 119
             ++ +EL T+   +++     L +V  E I ++                R +VIL+VGV
Sbjct: 76  VMQLTDELRTEAQRRNIQDTADLREVIVEKIVEIYHQEDDQSEVMNLEDGRLNVILMVGV 135

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI QLK+W +R   D V    GSD A
Sbjct: 136 NGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIQQLKVWGERVGVDVVSQSEGSDPA 195

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A   A+ K VD+LI DTAGRL N + LM  + KM RV+ R  P APH  L  LDA
Sbjct: 196 AVMYDAINAAKNKGVDILICDTAGRLQNKANLMQELDKMKRVIGRAVPGAPHEALLCLDA 255

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+
Sbjct: 256 TTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQ 315

Query: 300 PFVAKDFSAVITG-CLDYGEE 319
           PF  + +   +    ++  EE
Sbjct: 316 PFNPESYVYGLFADMIEQNEE 336


>gi|184158365|ref|YP_001846704.1| Signal recognition particle GTPase [Acinetobacter baumannii ACICU]
 gi|239503951|ref|ZP_04663261.1| Signal recognition particle GTPase [Acinetobacter baumannii AB900]
 gi|260554794|ref|ZP_05827015.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii ATCC 19606]
 gi|332872440|ref|ZP_08440413.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii 6014059]
 gi|183209959|gb|ACC57357.1| Signal recognition particle GTPase [Acinetobacter baumannii ACICU]
 gi|193077529|gb|ABO12357.2| cell division protein [Acinetobacter baumannii ATCC 17978]
 gi|260411336|gb|EEX04633.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii ATCC 19606]
 gi|322508691|gb|ADX04145.1| Cell division protein [Acinetobacter baumannii 1656-2]
 gi|323518297|gb|ADX92678.1| Signal recognition particle GTPase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332739363|gb|EGJ70217.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii 6014059]
          Length = 368

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 134/312 (42%), Positives = 198/312 (63%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
            + +       +  ++ +G + T     +G+ +I I  + +DD + EE+E+ L+ +DIGV
Sbjct: 53  PSTEPEQPKSGFFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGV 112

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGV
Sbjct: 113 DATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGV 172

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A
Sbjct: 173 NGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSA 232

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++AF+ A+AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA
Sbjct: 233 SVIFDAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDA 292

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ QV+ F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL 
Sbjct: 293 GTGQNAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLR 352

Query: 300 PFVAKDFSAVIT 311
           PF AK F A + 
Sbjct: 353 PFSAKSFVAALF 364


>gi|220936146|ref|YP_002515045.1| signal recognition particle-docking protein FtsY [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219997456|gb|ACL74058.1| signal recognition particle-docking protein FtsY [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 329

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 135/312 (43%), Positives = 199/312 (63%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60
           +     ++S     +L KG + T   L EG+  ++  R+ +DD + EELE  L+ +D+GV
Sbjct: 13  TKSPSPAQSEGLFSRLRKGLSKTGQALTEGMATLVMGRKAIDDELLEELETRLLMADVGV 72

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              Q+I++ L  +   K+++    L   + E + ++L+P++ P   D S +P VILVVG+
Sbjct: 73  EATQRILDGLTRRVARKELTDADALFKALHEAMTEILVPVAHPLQIDASKKPFVILVVGI 132

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+K++ + G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A
Sbjct: 133 NGAGKTTTIGKLAKRLQNEGRSVMLAAGDTFRAAAVEQLQVWGERNRIPVITQGKGADSA 192

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+A + A+A+ VDVLI DTAGRLH  + LM  + K+ RV++RLDP APH  L V+DA
Sbjct: 193 SVIYDAVQAAKARGVDVLIADTAGRLHTQTNLMEEMKKVRRVIQRLDPDAPHETLLVVDA 252

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNAL Q   FH     TGL +TK+DGTA+GG +  +     IP+ F+GVGEGI+DL 
Sbjct: 253 GTGQNALNQAREFHQAVNLTGLAVTKLDGTAKGGIVFAMAERMGIPIRFIGVGEGIDDLR 312

Query: 300 PFVAKDFSAVIT 311
            F A DF   + 
Sbjct: 313 TFRADDFVKALL 324


>gi|254226613|ref|ZP_04920194.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           V51]
 gi|125620885|gb|EAZ49238.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           V51]
          Length = 393

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 82  EQEKPTESFFARLKRSLSRTKANIGVGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 141

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 142 KIIANLTAKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 201

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 202 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 261

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 262 DAIEAAKARGMDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 321

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 322 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 381

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 382 QEFIDALF 389


>gi|119776600|ref|YP_929340.1| cell division protein FtsY [Shewanella amazonensis SB2B]
 gi|119769100|gb|ABM01671.1| signal recognition particle-docking protein FtsY [Shewanella
           amazonensis SB2B]
          Length = 563

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 192/303 (63%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
              +  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    K+++ 
Sbjct: 253 KEGFFARLKRGLMRTSENIGSGFIGLFRGKKIDDELFEELEEQLLIADVGVETTSKLIKS 312

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      + +     LY++  E + + L P+S P   + +  P+VIL+VGVNGVGKTT I
Sbjct: 313 LTEHASRRQLKDAEALYELLREEMQRTLEPVSVPLVPENAQGPYVILMVGVNGVGKTTTI 372

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + 
Sbjct: 373 GKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQS 432

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK VDVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q
Sbjct: 433 AKAKGVDVLICDTAGRLQNKNHLMEELKKVVRVMKKLDESAPHEVMLTLDASTGQNAISQ 492

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+ +TK+DGTA+GG +  I     IP+ ++GVGE I+DL  F A+DF  
Sbjct: 493 AKLFQEAVGVTGISITKLDGTAKGGVIFAIADKFGIPIRYIGVGEQIDDLRVFNARDFID 552

Query: 309 VIT 311
            + 
Sbjct: 553 ALF 555


>gi|260599765|ref|YP_003212336.1| cell division protein ftsY [Cronobacter turicensis z3032]
 gi|260218942|emb|CBA34297.1| Cell division protein ftsY [Cronobacter turicensis z3032]
          Length = 327

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 192/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 16  EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVDTT 75

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + E +  +L  + +P + +  + P VIL+VGVNGV
Sbjct: 76  RKIIANLTEGASRKQLRDAEALYGLLKEEMGDILAKVDEPLSVE-GNTPFVILMVGVNGV 134

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 135 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 194

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD +APH V+  +DA+TG
Sbjct: 195 FDAIQAAKARGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDENAPHEVMLTIDASTG 254

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 255 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFN 314

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 315 AGDFIEALFARED 327


>gi|186893578|ref|YP_001870690.1| signal recognition particle-docking protein FtsY [Yersinia
           pseudotuberculosis PB1/+]
 gi|186696604|gb|ACC87233.1| signal recognition particle-docking protein FtsY [Yersinia
           pseudotuberculosis PB1/+]
          Length = 550

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 237 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 296

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 297 TTRKIITSLTEHASRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 355

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 356 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 415

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 416 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 475

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 476 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 535

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 536 FKADEFIEALFARED 550


>gi|51594576|ref|YP_068767.1| cell division protein [Yersinia pseudotuberculosis IP 32953]
 gi|51587858|emb|CAH19461.1| cell division protein [Yersinia pseudotuberculosis IP 32953]
          Length = 574

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 261 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 320

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 321 TTRKIITSLTEHASRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 379

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 380 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 439

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 440 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 499

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 500 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 559

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 560 FKADEFIEALFARED 574


>gi|222056675|ref|YP_002539037.1| signal recognition particle-docking protein FtsY [Geobacter sp.
           FRC-32]
 gi|221565964|gb|ACM21936.1| signal recognition particle-docking protein FtsY [Geobacter sp.
           FRC-32]
          Length = 342

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 126/307 (41%), Positives = 186/307 (60%), Gaps = 3/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQK 65
             E   +  +L +G   T   +   I  ++   +++D  V EELE++LI +DIGV    +
Sbjct: 37  PKEKTGFFDRLKQGLTKTHESIVGRIDSLLLGQKQIDADVLEELEEILITADIGVKTTVE 96

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++  L  +    ++     L   + + I   L+ +    +   + +P VILV+GVNGVGK
Sbjct: 97  LIRTLEQRLKRNELKDGNALKAALKQEITNRLVQVESGLDI-IAAKPFVILVIGVNGVGK 155

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ +   AG KV+LAAGDTFR+AA +QL+IW +R  A+ V  + G+D +A+A++
Sbjct: 156 TTTIGKLAAQYRLAGKKVLLAAGDTFRAAAAEQLEIWGERVGAEVVRHKEGADPSAVAFD 215

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K A A+  DVL+IDTAGRLH    LM  + K+ RV++R  P APH  L VLDA TGQN
Sbjct: 216 ACKAALARGCDVLLIDTAGRLHTKVNLMEEMKKIRRVIEREIPGAPHETLLVLDAATGQN 275

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q  +F   A  TGLI+TK+DGTA+GG ++ +     +PV ++GVGEG+ DL  F  +
Sbjct: 276 AISQASLFKEAAQVTGLILTKLDGTAKGGIVVAVSHEFSLPVRYIGVGEGVEDLREFEPQ 335

Query: 305 DFSAVIT 311
           +F   I 
Sbjct: 336 EFVDAIF 342


>gi|251793357|ref|YP_003008085.1| cell division protein FtsY [Aggregatibacter aphrophilus NJ8700]
 gi|247534752|gb|ACS97998.1| cell division protein FtsY [Aggregatibacter aphrophilus NJ8700]
          Length = 495

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 193/312 (61%), Gaps = 2/312 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +  Q+  SE   +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV
Sbjct: 180 VETQEKPSEG-GFFSRLLKGLVKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGV 238

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               KI+  L      + +     LY  +   + ++L P+++P   D S +P+VIL+VGV
Sbjct: 239 PTTTKIINNLTQHATRQQLQNADTLYQQLKLEMGQILKPVAQPLRIDGSKKPYVILMVGV 298

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGK+++K    G  VMLAAGDTFR+AA++QL++W +R     V   IGSD+A
Sbjct: 299 NGVGKTTTIGKVARKFQMEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSIGSDSA 358

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A A+ +DVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA
Sbjct: 359 SVIFDAMQSAAARNIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDA 418

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL 
Sbjct: 419 GTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLR 478

Query: 300 PFVAKDFSAVIT 311
            F A++F   + 
Sbjct: 479 EFNAEEFIDALF 490


>gi|319638771|ref|ZP_07993530.1| cell division protein FtsY [Neisseria mucosa C102]
 gi|317400012|gb|EFV80674.1| cell division protein FtsY [Neisseria mucosa C102]
          Length = 510

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 189/311 (60%), Gaps = 2/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +   V  + LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+ 
Sbjct: 200 APAPVEEQKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGME 259

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             + +++++  +   K +     L   + + ++ ++ PL KP     +  P VI++ G+N
Sbjct: 260 ATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLVKPLEKPLVLPETKEPFVIMLAGIN 319

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA
Sbjct: 320 GAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAA 378

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA 
Sbjct: 379 VCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDAN 438

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNA+ QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL P
Sbjct: 439 IGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRP 498

Query: 301 FVAKDFSAVIT 311
           F AK F   + 
Sbjct: 499 FNAKAFVDALL 509


>gi|315658480|ref|ZP_07911352.1| cell division protein FtsY [Staphylococcus lugdunensis M23590]
 gi|315496809|gb|EFU85132.1| cell division protein FtsY [Staphylococcus lugdunensis M23590]
          Length = 407

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 126/321 (39%), Positives = 188/321 (58%), Gaps = 7/321 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 72  EEIEAQKIG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 129

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNW--DFSHRPHVILVVGV 119
             ++ +EL T+   +++     L +V  E I ++                R +VIL+VGV
Sbjct: 130 VMQLTDELRTEAQRRNIQDTADLREVIVEKIVEIYHQEDDQSEVMNLEDGRLNVILMVGV 189

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI QLK+W +R   D V    GSD A
Sbjct: 190 NGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIQQLKVWGERVGVDVVSQSEGSDPA 249

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A   A+ K VD+LI DTAGRL N + LM  + KM RV+ R  P APH  L  LDA
Sbjct: 250 AVMYDAINAAKNKGVDILICDTAGRLQNKANLMQELDKMKRVIGRAVPGAPHEALLCLDA 309

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+
Sbjct: 310 TTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQ 369

Query: 300 PFVAKDFSAVITG-CLDYGEE 319
           PF  + +   +    ++  EE
Sbjct: 370 PFNPESYVYGLFADMIEQNEE 390


>gi|262404882|ref|ZP_06081436.1| signal recognition particle receptor protein FtsY [Vibrio sp.
           RC586]
 gi|262348966|gb|EEY98105.1| signal recognition particle receptor protein FtsY [Vibrio sp.
           RC586]
          Length = 399

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 88  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTT 147

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   +   +P+VIL+VGVNGVG
Sbjct: 148 KIIANLTAKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETDKKPYVILMVGVNGVG 207

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 208 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 267

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 268 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 327

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 328 NAISQAKLFSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 387

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 388 QEFIDALF 395


>gi|256828204|ref|YP_003156932.1| signal recognition particle-docking protein FtsY [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577380|gb|ACU88516.1| signal recognition particle-docking protein FtsY [Desulfomicrobium
           baculatum DSM 4028]
          Length = 524

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 116/300 (38%), Positives = 179/300 (59%), Gaps = 5/300 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             KL+ G   T  +L   I  +++ +   DD   EELE++L+ +D+GV   Q++ + L  
Sbjct: 227 FLKLSAGLGKTREQLTMRIDQLLAMTGNYDDAFWEELEEILLMADVGVNATQELSKRLRP 286

Query: 73  K-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K R A +         + E +  +     +P     S  P V+L++GVNG GKTT I KL
Sbjct: 287 KLRQAGERDAATFKTLMKEELASV---FIEPKTPKVSQPPEVVLMIGVNGAGKTTTIAKL 343

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KV++AAGDTFR+AAI+QL++W+ R  A F     GSD AA+A+EA + A  
Sbjct: 344 AHRAQMQGRKVLVAAGDTFRAAAIEQLQVWSKRVGAGFYAKAHGSDPAAVAFEAVEYAMK 403

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++ +DTAGRL     LM  + K+ RVL +    APH  + VLD+TTGQNAL QV++
Sbjct: 404 EGYDLVFVDTAGRLQTKHNLMEELKKINRVLGKKLEGAPHRTILVLDSTTGQNALSQVKL 463

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   +    +++TK+DGTA+GG ++ I +  KIP+ F+G+GE + DL PF  ++F++ + 
Sbjct: 464 FSQASPVDEIVLTKLDGTAKGGIIVAIALEFKIPISFVGLGEKMEDLRPFSGQEFASALF 523


>gi|332871215|ref|ZP_08439792.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii 6013113]
 gi|332731700|gb|EGJ62983.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii 6013113]
          Length = 369

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 134/312 (42%), Positives = 198/312 (63%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
            + +       +  ++ +G + T     +G+ +I I  + +DD + EE+E+ L+ +DIGV
Sbjct: 54  PSTETEQPKSGFFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGV 113

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGV
Sbjct: 114 DATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGV 173

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A
Sbjct: 174 NGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSA 233

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++AF+ A+AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA
Sbjct: 234 SVIFDAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDA 293

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ QV+ F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL 
Sbjct: 294 GTGQNAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLR 353

Query: 300 PFVAKDFSAVIT 311
           PF AK F A + 
Sbjct: 354 PFSAKSFVAALF 365


>gi|134096064|ref|YP_001101139.1| signal recognition particle receptor [Herminiimonas arsenicoxydans]
 gi|133739967|emb|CAL63018.1| Cell division protein FtsY homolog [Herminiimonas arsenicoxydans]
          Length = 408

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 127/307 (41%), Positives = 184/307 (59%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A +  SW+ +L  G + TS  L    T +    ++D+ + EELE  L+ SD GV   Q +
Sbjct: 108 AEQKQSWMARLKVGLSKTSSNL----TTLFVGAKIDEDLYEELESALLMSDAGVDATQFL 163

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + EL  K   + ++    +   +  L+ +ML PL KP      H+P V+++ GVNG GKT
Sbjct: 164 LTELKRKVRNEKLTEAAQVKTALRSLLLEMLTPLQKPLVLG-QHQPLVMMITGVNGAGKT 222

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   +  E   D AA+A++A
Sbjct: 223 TTIGKLAKHLQAHHQSVLLAAGDTFRAAAREQLTVWGERNNVTVIAQE-SGDPAAVAFDA 281

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              AQA+  +V+++DTAGRL     LM  + K+ RV+ +    APH +L ++D  TGQNA
Sbjct: 282 VHSAQARGTNVVMVDTAGRLPTQLHLMEELKKIKRVIAKGMSSAPHEILLIIDGNTGQNA 341

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGL++TK+DGTA+GG L  I     IPVYF+GVGE I DL+PF A++
Sbjct: 342 LTQVKAFDDALGLTGLVVTKLDGTAKGGVLAAIARARPIPVYFIGVGEQIEDLQPFNAQE 401

Query: 306 FSAVITG 312
           F   + G
Sbjct: 402 FVEALLG 408


>gi|50085394|ref|YP_046904.1| cell division protein [Acinetobacter sp. ADP1]
 gi|49531370|emb|CAG69082.1| cell division protein [Acinetobacter sp. ADP1]
          Length = 373

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 135/304 (44%), Positives = 197/304 (64%), Gaps = 2/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              +  ++ +G   T   L +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I+ 
Sbjct: 66  KSGFFSRMKQGLTKTRRNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIIT 125

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVGKTT 
Sbjct: 126 NLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKTPYVILMVGVNGVGKTTT 185

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R +   V    G+D+A++ ++AF+
Sbjct: 186 IGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNNISVVAQGHGADSASVIFDAFE 245

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQNA+ 
Sbjct: 246 SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAIN 305

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QV+ F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF AK F 
Sbjct: 306 QVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFV 365

Query: 308 AVIT 311
           A + 
Sbjct: 366 AALF 369


>gi|198242705|ref|YP_002217529.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937221|gb|ACH74554.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326625310|gb|EGE31655.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 491

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 190/313 (60%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           +++ + A+A+ VDVLI DTAGRL N   LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDSIQAAKARNVDVLIADTAGRLQNKLHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|226329396|ref|ZP_03804914.1| hypothetical protein PROPEN_03301 [Proteus penneri ATCC 35198]
 gi|225202582|gb|EEG84936.1| hypothetical protein PROPEN_03301 [Proteus penneri ATCC 35198]
          Length = 541

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 134/309 (43%), Positives = 194/309 (62%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++   +   +  +L KG   T   L  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 230 EQEKPKKEGFFSRLKKGLLKTRQNLGSGFIGLFRGKKIDDELFEELEEQLLIADVGMETT 289

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L      KD+     LY  + E + ++L  + KP N +   +P VIL+VGVNGV
Sbjct: 290 TKIITSLTKHATHKDLKDAEALYGKLREEMGEILTKVDKPLNIE-GKKPFVILMVGVNGV 348

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D A++ 
Sbjct: 349 GKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQHTGADPASVI 408

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + AQAK VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+TG
Sbjct: 409 FDAIQSAQAKGVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTLDASTG 468

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TGL +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 469 QNAVSQAKLFNETVGLTGLTLTKLDGTAKGGVIFSIADQFSIPIRYIGVGEGIEDLRPFK 528

Query: 303 AKDFSAVIT 311
           A DF   + 
Sbjct: 529 ADDFIEALF 537


>gi|242318106|ref|ZP_04817122.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1106b]
 gi|242141345|gb|EES27747.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 1106b]
          Length = 384

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ 
Sbjct: 87  KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 142

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 143 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 201

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 202 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 260

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 261 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 320

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 321 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 380

Query: 309 VITG 312
            + G
Sbjct: 381 ALLG 384


>gi|323524665|ref|YP_004226818.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           CCGE1001]
 gi|323381667|gb|ADX53758.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           CCGE1001]
          Length = 386

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 132/309 (42%), Positives = 186/309 (60%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G + TS  L    T I    ++D+ + EELE  L+ SD GV   +
Sbjct: 83  QDASAKRSWLTRLKTGLSKTSSSL----TGIFVGTKIDEDLYEELETALLMSDAGVDATE 138

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++E L  K  A+ ++  + +   +  L+  +L PL K      + +P V+++ GVNG G
Sbjct: 139 FLLEALREKVRAERLTEPQQVKAALRALLVDLLKPLEKSLMLGRA-KPLVVMIAGVNGAG 197

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL IW  R +   V  E   D AA+ +
Sbjct: 198 KTTSIGKLAKHLQSFNQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVAQE-SGDPAAVIF 256

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 257 DAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQ 316

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A
Sbjct: 317 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSA 376

Query: 304 KDFSAVITG 312
           ++FS  + G
Sbjct: 377 EEFSDALLG 385


>gi|169795732|ref|YP_001713525.1| cell division protein [Acinetobacter baumannii AYE]
 gi|213157575|ref|YP_002319620.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii AB0057]
 gi|215483218|ref|YP_002325425.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii AB307-0294]
 gi|301345809|ref|ZP_07226550.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii AB056]
 gi|301513516|ref|ZP_07238753.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii AB058]
 gi|301594918|ref|ZP_07239926.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii AB059]
 gi|332850276|ref|ZP_08432624.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii 6013150]
 gi|169148659|emb|CAM86525.1| cell division protein [Acinetobacter baumannii AYE]
 gi|213056735|gb|ACJ41637.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii AB0057]
 gi|213986284|gb|ACJ56583.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii AB307-0294]
 gi|332730851|gb|EGJ62160.1| signal recognition particle-docking protein FtsY [Acinetobacter
           baumannii 6013150]
          Length = 368

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 134/312 (42%), Positives = 198/312 (63%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
            + +       +  ++ +G + T     +G+ +I I  + +DD + EE+E+ L+ +DIGV
Sbjct: 53  PSTETEQPKSGFFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGV 112

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGV
Sbjct: 113 DATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGV 172

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A
Sbjct: 173 NGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSA 232

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++AF+ A+AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA
Sbjct: 233 SVIFDAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDA 292

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ QV+ F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL 
Sbjct: 293 GTGQNAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLR 352

Query: 300 PFVAKDFSAVIT 311
           PF AK F A + 
Sbjct: 353 PFSAKSFVAALF 364


>gi|153948996|ref|YP_001399236.1| cell division protein FtsY [Yersinia pseudotuberculosis IP 31758]
 gi|152960491|gb|ABS47952.1| cell division protein FtsY [Yersinia pseudotuberculosis IP 31758]
          Length = 541

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 228 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 287

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 288 TTRKIITSLTEHASRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 346

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 347 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 406

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 407 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 466

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 467 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 526

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 527 FKADEFIEALFARED 541


>gi|269968645|ref|ZP_06182642.1| signal recognition particle-docking protein FtsY [Vibrio
           alginolyticus 40B]
 gi|269826732|gb|EEZ81069.1| signal recognition particle-docking protein FtsY [Vibrio
           alginolyticus 40B]
          Length = 408

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 126/309 (40%), Positives = 197/309 (63%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++D+ + EELE+ L+ +D+G+   
Sbjct: 96  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMNTT 155

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY  + E + ++L  + +P   D +  P+VIL+VGVNGV
Sbjct: 156 TKIINNLTEKATRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSNKTPYVILMVGVNGV 215

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 216 GKTTTIGKLAKQFQTQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 275

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 276 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 335

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 336 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFE 395

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 396 TQEFIDALF 404


>gi|261250005|ref|ZP_05942582.1| signal recognition particle receptor protein FtsY [Vibrio
           orientalis CIP 102891]
 gi|260939509|gb|EEX95494.1| signal recognition particle receptor protein FtsY [Vibrio
           orientalis CIP 102891]
          Length = 406

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 199/312 (63%), Gaps = 1/312 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  A T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 95  EQEKPTESFFARLKRSLARTKANIGAGFFGLFKGKQIDDELFEELEEQLLIADVGMDTTL 154

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI++ L  K   +D+     LY  + E + ++L  + KP   D S  P+VIL+VGVNGVG
Sbjct: 155 KIIDNLTEKASRQDLKDGEALYGLLKEEMAEILSNVEKPLEVDSSKAPYVILMVGVNGVG 214

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ Y
Sbjct: 215 KTTTIGKLAKQFQAQGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVIY 274

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+AK VDV+I DTAGRL N + LM  + K++RV++++D  APH ++  LDA TGQ
Sbjct: 275 DAIESAKAKGVDVVIADTAGRLQNKANLMEELRKIVRVMQKVDGSAPHEIMLTLDAGTGQ 334

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PF  
Sbjct: 335 NAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFET 394

Query: 304 KDFSAVITGCLD 315
           ++F   +    D
Sbjct: 395 QEFIDALFSRED 406


>gi|57866686|ref|YP_188384.1| cell division protein FtsY [Staphylococcus epidermidis RP62A]
 gi|242242518|ref|ZP_04796963.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus
           epidermidis W23144]
 gi|57637344|gb|AAW54132.1| cell division protein FtsY [Staphylococcus epidermidis RP62A]
 gi|242234026|gb|EES36338.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus
           epidermidis W23144]
          Length = 408

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 131/326 (40%), Positives = 192/326 (58%), Gaps = 13/326 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 73  EEIEAQKIG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 130

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKML---MPLSKPFNWDFSHRPHVILVVG 118
             K+ +EL T+   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 131 VMKLTDELRTEAQRRNIQETEDLREVIVEKIVEIYHQEDDHSEAMNIE-DGRLNVILMVG 189

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI QL +W +R   + V    GSD 
Sbjct: 190 VNGVGKTTTIGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDP 249

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LD
Sbjct: 250 AAVVYDAINAAKNKDVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLD 309

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 310 ATTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDL 369

Query: 299 EPFVAKD-----FSAVITGCLDYGEE 319
           +PF  +      F+ +I    D  EE
Sbjct: 370 QPFSPESYVYGLFADMIEQNEDIPEE 395


>gi|258622824|ref|ZP_05717841.1| signal recognition particle-docking protein FtsY [Vibrio mimicus
           VM573]
 gi|258584885|gb|EEW09617.1| signal recognition particle-docking protein FtsY [Vibrio mimicus
           VM573]
          Length = 398

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 87  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTT 146

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   +   +P+VIL+VGVNGVG
Sbjct: 147 KIITNLTAKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIEADKKPYVILMVGVNGVG 206

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 207 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 266

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 267 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 326

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 327 NAISQAKLFSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 386

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 387 QEFIDALF 394


>gi|296105156|ref|YP_003615302.1| cell division protein FtsY [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059615|gb|ADF64353.1| cell division protein FtsY [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 485

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 174 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 233

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 234 RKIIANLTEGASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 292

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 293 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 352

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+++ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH ++  +DA+TG
Sbjct: 353 FDAIQAAKSRNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTIDASTG 412

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 413 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 472

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 473 ADDFIEALFARED 485


>gi|229525040|ref|ZP_04414445.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           bv. albensis VL426]
 gi|229338621|gb|EEO03638.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           bv. albensis VL426]
          Length = 401

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 121/308 (39%), Positives = 194/308 (62%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 90  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 149

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            I+  L  K   + +     LY  + E + ++L  + +P   +   +P+VIL+VGVNGVG
Sbjct: 150 NIIANLTAKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETEKKPYVILMVGVNGVG 209

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 210 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 269

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 270 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 329

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 330 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 389

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 390 QEFIDALF 397


>gi|261341956|ref|ZP_05969814.1| cell division protein FtsY [Enterobacter cancerogenus ATCC 35316]
 gi|288315865|gb|EFC54803.1| cell division protein FtsY [Enterobacter cancerogenus ATCC 35316]
          Length = 497

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 190/313 (60%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 186 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 245

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 246 RKIITNLTEGASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 304

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ 
Sbjct: 305 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVI 364

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH ++  +DA+TG
Sbjct: 365 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTIDASTG 424

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 425 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 484

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 485 ADDFIEALFARED 497


>gi|270488845|ref|ZP_06205919.1| signal recognition particle-docking protein FtsY [Yersinia pestis
           KIM D27]
 gi|270337349|gb|EFA48126.1| signal recognition particle-docking protein FtsY [Yersinia pestis
           KIM D27]
          Length = 580

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 267 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 326

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 327 TTRKIITSLTEHTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 385

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 386 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 445

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 446 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 505

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 506 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 565

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 566 FKADEFIEALFARED 580


>gi|85058062|ref|YP_453764.1| cell division protein [Sodalis glossinidius str. 'morsitans']
 gi|84778582|dbj|BAE73359.1| cell division protein [Sodalis glossinidius str. 'morsitans']
          Length = 504

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 122/313 (38%), Positives = 189/313 (60%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +  A E   +  +L      T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 193 EPPAPERAGFFTRLKNSLVKTRQNLGSGFIGLFRGKKIDDDLFEELEEQLLVADVGVETT 252

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI++ L+     + +     LY  +   +  +L+ + +P        P VIL+VGVNGV
Sbjct: 253 RKIIDGLIDHADRRHLKDAEALYSQLRAEMATILVNVERPLEV-TGKAPFVILMVGVNGV 311

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++     G  VMLAAGDTFR+AA++QL++W +R     +  + G+D+A++ 
Sbjct: 312 GKTTTIGKLARLYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQQTGADSASVI 371

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           +++ + A+A+ ++VLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TG
Sbjct: 372 FDSIQAAKARGIEVLIADTAGRLQNKAHLMDELKKIVRVMKKLDVEAPHEVMLTLDASTG 431

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q  +F+   G TG+ +TK+DGTA+GG +  +     IP+ F+GVGE I DL PF 
Sbjct: 432 QNAVSQANLFNDAVGLTGIALTKLDGTAKGGVIFAVADRFGIPIRFIGVGEAIEDLRPFK 491

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 492 ADDFIEALFARED 504


>gi|330685650|gb|EGG97291.1| signal recognition particle-docking protein FtsY [Staphylococcus
           epidermidis VCU121]
          Length = 414

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 124/321 (38%), Positives = 190/321 (59%), Gaps = 7/321 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 76  EEIEAQKIG--AKFKAGLEKSRENFQEQLNNLIARYRKVDEEFFEALEEMLITADVGFNT 133

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGV 119
             ++ EEL  +   +++     L    V +++        K    +    R +VIL+VGV
Sbjct: 134 VMQLTEELRAEAQRRNIQETEDLREVIVEKIVEIYHQEDDKSEAMNLEDGRLNVILMVGV 193

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI+QLK+W +R   + +    GSD A
Sbjct: 194 NGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIEQLKVWGERVGVEVISQSEGSDPA 253

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A   A+ K+VD+LI DTAGRL N S LM  + K+ RV+ R  P APH  L  LDA
Sbjct: 254 AVMYDAINAAKNKQVDILICDTAGRLQNKSNLMQELEKVKRVIGRAVPDAPHEALLCLDA 313

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q   F  V   +G+++TK+DGTA+GG ++ I    KIPV ++G+GE ++DL+
Sbjct: 314 TTGQNALSQARTFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELKIPVKYVGLGEKLDDLQ 373

Query: 300 PFVAKDFSAVITG-CLDYGEE 319
           PF  + +   +    ++  EE
Sbjct: 374 PFNPESYVYGLFADMIEQNEE 394


>gi|149191502|ref|ZP_01869751.1| cell division protein FtsY [Vibrio shilonii AK1]
 gi|148834690|gb|EDL51678.1| cell division protein FtsY [Vibrio shilonii AK1]
          Length = 414

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 196/313 (62%), Gaps = 1/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   +   + +DD + EELE+ L+ +D+G+   
Sbjct: 102 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKEIDDELFEELEEQLLIADVGMNTT 161

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI++ L  K    D+     LY  + E + ++L  + KP   D +  P VIL+VGVNGV
Sbjct: 162 VKIIDSLTEKASRADLKDGEALYGLLKEEMAEILSHVEKPLEVDSTKMPFVILMVGVNGV 221

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ 
Sbjct: 222 GKTTTIGKLAKQYQAQGKKVMLAAGDTFRAAAVEQLQVWGERNDVPVIAQHTGADSASVI 281

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 282 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDESAPHEIMLTLDAGTG 341

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  +    +IP+ ++GVGE I+DL PF 
Sbjct: 342 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGESIDDLRPFE 401

Query: 303 AKDFSAVITGCLD 315
            +DF   +    D
Sbjct: 402 TQDFIDALFSRED 414


>gi|325139507|gb|EGC62047.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis CU385]
          Length = 421

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 118/306 (38%), Positives = 186/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|303328099|ref|ZP_07358538.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp.
           3_1_syn3]
 gi|302861925|gb|EFL84860.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp.
           3_1_syn3]
          Length = 534

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 182/313 (58%), Gaps = 3/313 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           +  +    E      K+++G + T  +    +  + +    LD+   EELE+L I +D+G
Sbjct: 218 LDLEDEEDERSRLFLKISEGLSRTREQFARRLDTLFAGHGELDEQFWEELEELFIMADLG 277

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + ++VE L  +   +  +      ++     + +     P      + P V+L++GV
Sbjct: 278 YEPSLELVERLKERARREKATRAEQARELLLAELEEI--FHAPRRISAVNPPEVVLMIGV 335

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT I KL+ +    G KVM+AAGDTFR+AAI+QL++WA+R  A F     GSD A
Sbjct: 336 NGVGKTTTIAKLAHRARMQGKKVMIAAGDTFRAAAIEQLQVWAERVGALFHARPAGSDPA 395

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A+EA ++A  + VDVL +DTAGRL     LM  + K+ +VL +  P APH  + VLDA
Sbjct: 396 SVAFEAVERAVREGVDVLFVDTAGRLQTKVNLMEELTKIRQVLGKKHPGAPHRSILVLDA 455

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q ++F   AG   LI+TK+DGTA+GG  I + + H +P+ F+G+GE + DL 
Sbjct: 456 TTGQNALSQTKLFKEAAGVDELILTKLDGTAKGGVAIAVAMQHHLPITFVGLGEKMEDLR 515

Query: 300 PFVAKDFSAVITG 312
           PF   D++  + G
Sbjct: 516 PFNGADYARALLG 528


>gi|262163696|ref|ZP_06031437.1| signal recognition particle receptor protein FtsY [Vibrio mimicus
           VM223]
 gi|262027912|gb|EEY46576.1| signal recognition particle receptor protein FtsY [Vibrio mimicus
           VM223]
          Length = 390

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 79  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTT 138

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   +   +P+VIL+VGVNGVG
Sbjct: 139 KIITNLTAKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETDKKPYVILMVGVNGVG 198

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 199 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 258

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 259 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 318

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 319 NAISQAKLFSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 378

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 379 QEFIDALF 386


>gi|325135260|gb|EGC57883.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis M13399]
          Length = 421

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 118/306 (38%), Positives = 186/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|70726680|ref|YP_253594.1| hypothetical protein SH1679 [Staphylococcus haemolyticus JCSC1435]
 gi|68447404|dbj|BAE04988.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 407

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 129/325 (39%), Positives = 189/325 (58%), Gaps = 11/325 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R +D+   E LE++LI +D+G   
Sbjct: 69  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRTVDEDFFEALEEMLITADVGFNT 126

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNW--DFSHRPHVILVVGV 119
             ++ EEL T+   +++     L +V  E I ++                R +VIL+VGV
Sbjct: 127 VMQLTEELRTEAQRRNIQETEDLREVIVEKIVEIYHQEDDQSEAMNLEDGRLNVILMVGV 186

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQL++W DR   + +    GSD A
Sbjct: 187 NGVGKTTTIGKLAHRYKMEGKKVMLAAGDTFRAGAIDQLQVWGDRVGVEVIRQSEGSDPA 246

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A   A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LDA
Sbjct: 247 AVVYDAINSAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAVPDAPHEALLCLDA 306

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+
Sbjct: 307 TTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQ 366

Query: 300 PFVAKD-----FSAVITGCLDYGEE 319
           PF  +      F+ +I    D  +E
Sbjct: 367 PFNPESYVYGLFADMIEQNEDIPDE 391


>gi|260914701|ref|ZP_05921166.1| FtsY protein [Pasteurella dagmatis ATCC 43325]
 gi|260631205|gb|EEX49391.1| FtsY protein [Pasteurella dagmatis ATCC 43325]
          Length = 476

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 126/311 (40%), Positives = 191/311 (61%), Gaps = 1/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             ++       +  +L KG   T   +  G       +++DD + EELE+ L+ +D+GV 
Sbjct: 162 PQEQEKPSEGGFFSRLVKGLLKTKQNIGVGFRSFFLGKKIDDELFEELEEQLLVADLGVP 221

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              KI+  L      K +    +LY  +   + ++L P+++P   D S +P+VIL+VGVN
Sbjct: 222 TTTKIINNLTQHASRKQLQDAELLYQQLKVEMAEILKPVAQPLLIDQSKKPYVILMVGVN 281

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL++K  + G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A+
Sbjct: 282 GVGKTTTIGKLARKFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSAS 341

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A A+ VDVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA 
Sbjct: 342 VIFDAMQSAAARNVDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAG 401

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL  
Sbjct: 402 TGQNAISQAKLFHEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLRE 461

Query: 301 FVAKDFSAVIT 311
           F A +F   + 
Sbjct: 462 FKADEFIEALF 472


>gi|332704186|ref|ZP_08424274.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554335|gb|EGJ51379.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 476

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 118/299 (39%), Positives = 185/299 (61%), Gaps = 5/299 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL++G   T  ++ + I  +++S  ++D+   EELE++LI +D+G   + K++E L  + 
Sbjct: 180 KLSEGLEKTKEQISKRIEGLMASHSKIDESFWEELEEILIMADVGFEPSMKLIERLRDRV 239

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
                          E + + L  + K P      + P V++++GVNGVGKTT I KL+ 
Sbjct: 240 RKAGTDDPARFK---EFLREELETIFKAPKRITAINPPEVVMMIGVNGVGKTTTIAKLAY 296

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +    G +V++AAGDTFR+AAI+QL+IWA R  A F     G+D AA+A+EA  +A ++ 
Sbjct: 297 RAQMQGRRVLIAAGDTFRAAAIEQLEIWAKRVGAGFYSKGAGADPAAVAFEAVDKAVSEG 356

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+L++DTAGRLH    LM  + K+ RV  +  P +PH  + V+DATTGQNAL+Q ++F 
Sbjct: 357 YDLLLLDTAGRLHTKINLMEELKKIQRVCGKKHPGSPHRSILVVDATTGQNALQQAKLFG 416

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              G   +I+TK+DGTA+GG ++ I + H +P+ F+G+GE + DL PF  KDF+  + G
Sbjct: 417 EAVGVDEIILTKLDGTAKGGIVVAIALEHALPITFVGLGEKMEDLRPFNGKDFAQALLG 475


>gi|326388652|ref|ZP_08210245.1| signal recognition particle-docking protein FtsY [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206903|gb|EGD57727.1| signal recognition particle-docking protein FtsY [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 308

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 137/301 (45%), Positives = 188/301 (62%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +W  +L  G   T  +L   +  ++ + RL D   +++ED LI SD+G   A +I E L 
Sbjct: 5   TWSDRLLGGLRKTQERLSGNLAGLVGANRLSDEQLDDIEDALIASDLGPRAAARIRERLA 64

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + R+ K +    +   V+E I  +L P+++P +     RP VILV+GVNG GKTT I KL
Sbjct: 65  SGRFEKGLDEATLREAVAEEIAAILRPVARPLDIVAFPRPQVILVIGVNGSGKTTTIAKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +    +    VMLAAGDTFR+AAI QL++WA+R     V    G D A++ ++A KQA  
Sbjct: 125 AHLFQELDYSVMLAAGDTFRAAAIGQLRVWAERLGVPIVSGAEGGDPASIVFDAVKQATD 184

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLI+DTAGRL N   LM  + K+ RVL RL+P APH V+ VLDAT GQNAL+Q+E+
Sbjct: 185 AGTDVLIVDTAGRLQNKRELMDELAKIRRVLGRLNPEAPHDVVLVLDATNGQNALQQIEI 244

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG TGL+MTK+DGTARGG L+     + +P++ +GVGE I+DL PF     + VI 
Sbjct: 245 FREVAGVTGLVMTKLDGTARGGVLVAAAEQYGLPIHAIGVGEKIDDLRPFDPDLVAKVIA 304

Query: 312 G 312
           G
Sbjct: 305 G 305


>gi|254230125|ref|ZP_04923521.1| signal recognition particle-docking protein FtsY, putative [Vibrio
           sp. Ex25]
 gi|262392912|ref|YP_003284766.1| signal recognition particle receptor protein FtsY [Vibrio sp. Ex25]
 gi|151937370|gb|EDN56232.1| signal recognition particle-docking protein FtsY, putative [Vibrio
           sp. Ex25]
 gi|262336506|gb|ACY50301.1| signal recognition particle receptor protein FtsY [Vibrio sp. Ex25]
          Length = 407

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 126/309 (40%), Positives = 197/309 (63%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++D+ + EELE+ L+ +D+G+   
Sbjct: 95  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMNTT 154

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY  + E + ++L  + +P   D +  P+VIL+VGVNGV
Sbjct: 155 TKIINNLTEKATRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSNKTPYVILMVGVNGV 214

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 215 GKTTTIGKLAKQFQTQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 274

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 275 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 334

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF 
Sbjct: 335 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFGIPIRYIGVGEGIEDLRPFE 394

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 395 TQEFIDALF 403


>gi|148555838|ref|YP_001263420.1| signal recognition particle-docking protein FtsY [Sphingomonas
           wittichii RW1]
 gi|148501028|gb|ABQ69282.1| signal recognition particle-docking protein FtsY [Sphingomonas
           wittichii RW1]
          Length = 311

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 144/305 (47%), Positives = 192/305 (62%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           W  KL  GF  TS +L E +T +     LD+   +E+E+ LI SD+G A A +I   L  
Sbjct: 6   WHEKLFGGFRKTSDRLGENLTGLFGKAALDEATLDEIEEALIASDLGPATAGRIRARLKG 65

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           + + K +  + +   V++ I K+L P++KP   +   RP VILV+GVNG GKTT I KL+
Sbjct: 66  EMFEKGLDERALREIVAQEIEKVLAPVAKPLEIEAFPRPQVILVIGVNGSGKTTTIAKLA 125

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             + +    VML AGDTFR+AAI QLK+WADR     +  + G DAA L +E  KQ   K
Sbjct: 126 HMLQEQDYAVMLVAGDTFRAAAIGQLKVWADRIGVPIISGKEGGDAAGLVFEGVKQGTEK 185

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +DVLI+DTAGRL N + LM  + K+ RVL RL+  APH VL VLDATTGQNAL Q+E+F
Sbjct: 186 GIDVLIVDTAGRLQNKAGLMDELAKIRRVLGRLNTAAPHDVLLVLDATTGQNALSQIEIF 245

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              AG TGLIMTK+DGTARGG L+       +PV+ +G+GEG++DL+PF   + +  I G
Sbjct: 246 KETAGVTGLIMTKLDGTARGGVLVAAAERTGMPVHAIGLGEGVDDLKPFDPAEVARAIAG 305

Query: 313 CLDYG 317
               G
Sbjct: 306 LERIG 310


>gi|225076774|ref|ZP_03719973.1| hypothetical protein NEIFLAOT_01825 [Neisseria flavescens
           NRL30031/H210]
 gi|224951872|gb|EEG33081.1| hypothetical protein NEIFLAOT_01825 [Neisseria flavescens
           NRL30031/H210]
          Length = 419

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 184/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI  D+G+   + +
Sbjct: 114 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEATEYL 173

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 174 MKDVRNRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 233

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 234 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 292

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 293 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 352

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF AK 
Sbjct: 353 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRSVPVRYIGVGEGIDDLRPFNAKA 412

Query: 306 FSAVIT 311
           F   + 
Sbjct: 413 FVDALL 418


>gi|114331516|ref|YP_747738.1| signal recognition particle-docking protein FtsY [Nitrosomonas
           eutropha C91]
 gi|114308530|gb|ABI59773.1| signal recognition particle-docking protein FtsY [Nitrosomonas
           eutropha C91]
          Length = 345

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 121/318 (38%), Positives = 190/318 (59%), Gaps = 9/318 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  ++  ES+S+  K+ +G   T  +  + ++ +   R++D+ + EELE  L+ +D G+ 
Sbjct: 28  NPARIEVESVSFADKIRQGLTRTRQQFGKQLSGLFGGRKIDEDLYEELETALLTADTGIQ 87

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              +++E L T+     +   + L   + + + ++L PL +P      H+P VI++ GVN
Sbjct: 88  ATNRLLESLRTRVKRDALDDSKQLKTALQDALTELLQPLERPLVT-TGHKPFVIMIAGVN 146

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG----S 176
           GVGKTT IGKL+      G  V+LAAGDTFR+AA +QLKIW +R     +  E       
Sbjct: 147 GVGKTTTIGKLAHYFQSQGHSVLLAAGDTFRAAAQEQLKIWGERNQITVISQESDPGKKG 206

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A   A A+K+D+++ DTAGRL     LM  I K+ RV+ +  P APH VL V
Sbjct: 207 DPAAVIFDAVNAAIARKIDIVLADTAGRLTTQLHLMEEIKKIKRVVAKAIPDAPHEVLLV 266

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH---KIPVYFLGVGE 293
           LDA TGQNA+ Q++ F+   G TGL+MTK+DGTA+GG +  I        + + F+G+GE
Sbjct: 267 LDANTGQNAVSQLKAFNDALGVTGLVMTKLDGTAKGGVIAAIAAQFVDNPLALRFIGMGE 326

Query: 294 GINDLEPFVAKDFSAVIT 311
           G++DL PF A++F+  + 
Sbjct: 327 GLDDLRPFNAREFAEALF 344


>gi|325207096|gb|ADZ02548.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis NZ-05/33]
          Length = 421

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|262279319|ref|ZP_06057104.1| signal recognition particle-docking protein FtsY [Acinetobacter
           calcoaceticus RUH2202]
 gi|262259670|gb|EEY78403.1| signal recognition particle-docking protein FtsY [Acinetobacter
           calcoaceticus RUH2202]
          Length = 370

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 136/312 (43%), Positives = 197/312 (63%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
           S   V      +  ++ +G   T     +G+ +I I  + +DD + EE+E+ L+ +DIGV
Sbjct: 55  SETAVEQPKSGFFGRMKEGLTKTRRNFADGMVNILIGGKEIDDELLEEVEEQLLVADIGV 114

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGV
Sbjct: 115 EATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGV 174

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A
Sbjct: 175 NGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSA 234

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++AF+ A+AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA
Sbjct: 235 SVIFDAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDA 294

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ QV+ F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL 
Sbjct: 295 GTGQNAINQVQEFDQTVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLR 354

Query: 300 PFVAKDFSAVIT 311
           PF AK F A + 
Sbjct: 355 PFSAKSFVAALF 366


>gi|262172903|ref|ZP_06040581.1| signal recognition particle receptor protein FtsY [Vibrio mimicus
           MB-451]
 gi|261893979|gb|EEY39965.1| signal recognition particle receptor protein FtsY [Vibrio mimicus
           MB-451]
          Length = 392

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 195/308 (63%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 81  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTT 140

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   +   +P+VIL+VGVNGVG
Sbjct: 141 KIITNLTAKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETDKKPYVILMVGVNGVG 200

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 201 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 260

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 261 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 320

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 321 NAISQAKLFSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 380

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 381 QEFIDALF 388


>gi|304388845|ref|ZP_07370899.1| cell division protein FtsY [Neisseria meningitidis ATCC 13091]
 gi|304337211|gb|EFM03391.1| cell division protein FtsY [Neisseria meningitidis ATCC 13091]
 gi|325137247|gb|EGC59841.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis M0579]
 gi|325143381|gb|EGC65711.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis 961-5945]
 gi|325201235|gb|ADY96689.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis M01-240149]
 gi|325205143|gb|ADZ00596.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis M04-240196]
          Length = 421

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|62182070|ref|YP_218487.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129703|gb|AAX67406.1| GTPase domain of cell division membrane protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322716558|gb|EFZ08129.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 491

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 190/313 (60%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+G    
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGGETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 299 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 358

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TG
Sbjct: 359 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTG 418

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 419 QNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 478

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 479 ADDFIEALFARED 491


>gi|223041714|ref|ZP_03611908.1| cell division protein FtsY-like protein [Actinobacillus minor 202]
 gi|223017458|gb|EEF15875.1| cell division protein FtsY-like protein [Actinobacillus minor 202]
          Length = 517

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 123/301 (40%), Positives = 191/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L +G   T   +  G  +    +++DD + EELE+ L+ +D+G+    KI+  L 
Sbjct: 210 GFFSRLIQGLIKTKQSIGSGFFNFFRGKKIDDELFEELEEQLLIADLGMPTTTKIINNLS 269

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                + +     LY +  E +  +L P+++P   D S +P+VIL+VGVNGVGKTT IGK
Sbjct: 270 QHATKQQLKDADALYQLLKEELADVLKPVARPLEIDTSKKPYVILMVGVNGVGKTTTIGK 329

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+++  + G  VMLAAGDTFR+AA++QL++W +R +   +    GSD+A++ ++A + A 
Sbjct: 330 LARQFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVIAQTSGSDSASVIFDAMQSAS 389

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK +DVLI DTAGRL N + LM  + K++RV+++ D  APH ++  LDA TGQNA+ Q +
Sbjct: 390 AKNIDVLIADTAGRLQNKNNLMDELKKIVRVMQKYDETAPHEIMLTLDAGTGQNAISQAK 449

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF A++F   +
Sbjct: 450 LFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEFIEAL 509

Query: 311 T 311
            
Sbjct: 510 F 510


>gi|114049331|ref|YP_739881.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           MR-7]
 gi|113890773|gb|ABI44824.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           MR-7]
          Length = 584

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 128/303 (42%), Positives = 197/303 (65%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             S+  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ 
Sbjct: 275 KESFFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTSRLIQS 334

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      K +     LYD+  + + K L P++ P   + ++ P+VIL+VGVNGVGKTT I
Sbjct: 335 LTEHASRKQLKDAEALYDLLRDEMQKTLDPVAIPLVPENANGPYVILMVGVNGVGKTTTI 394

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++A + 
Sbjct: 395 GKLAKQYQRQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDALQA 454

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+K+DVLI DTAGRL N S LM  + K++RV+K+LDP APH V+  LDA+TGQNA+ Q
Sbjct: 455 AKARKIDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQ 514

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+ ++K+DGTA+GG +  I    KIP+ ++GVGE I+DL  F +K+F  
Sbjct: 515 AQLFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRTFNSKEFID 574

Query: 309 VIT 311
            + 
Sbjct: 575 ALF 577


>gi|21231854|ref|NP_637771.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768019|ref|YP_242781.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188991144|ref|YP_001903154.1| Cell division protein FtsY [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21113573|gb|AAM41695.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66573351|gb|AAY48761.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167732904|emb|CAP51100.1| Cell division protein FtsY [Xanthomonas campestris pv. campestris]
          Length = 546

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 124/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  LI +D+G+     +VE
Sbjct: 243 KPGWRERLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALVE 296

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  +++ V  Q +       +  +L P+SKP   D S +P V+L VGVNGVGKTT 
Sbjct: 297 GLRKRMKSREFVDAQAMFKAFRADLIALLQPVSKPLVIDRSVKPFVVLTVGVNGVGKTTT 356

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W DR     +     +DAA++A++A +
Sbjct: 357 IGKLAKRFKDDGHSLMLAAGDTFRAAAVAQLQAWGDRNGVAVIAQGQNADAASVAFDALQ 416

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  +VLI DTAGRLH  + LM  +GK+ RVL ++D  APH VL V+D TTGQNA+ 
Sbjct: 417 AAKARGTEVLIADTAGRLHTQTGLMNELGKIRRVLGKIDAAAPHEVLMVIDGTTGQNAIS 476

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F  + F 
Sbjct: 477 QLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFGIPIRFAGIGERPEDLRVFDPEAFV 536

Query: 308 AVIT 311
             + 
Sbjct: 537 DALL 540


>gi|261391594|emb|CAX49032.1| cell division protein FtsY [Neisseria meningitidis 8013]
          Length = 421

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|300767268|ref|ZP_07077180.1| cell division protein FtsY [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495087|gb|EFK30243.1| cell division protein FtsY [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 512

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 176/311 (56%), Gaps = 5/311 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           ++ + A    +   +  +G   +     + I   +++ R +D+   ++LED LI SD+G 
Sbjct: 192 ADSESAEPEPTEAERYDEGLKKSRKTFGDRINAFLANFRHVDEAFFDDLEDTLIESDVGY 251

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF---SHRPHVILV 116
             A +I +EL  +   K+   ++ +  V  E +  M     +  +         P VIL 
Sbjct: 252 ETAMRISDELRDEVKLKNAKSKKEISSVIVEKLVDMYGEAGEGEDNSIHMAKSGPTVILF 311

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT IGK++      G KV+LAA DTFR+ AI QL++W  R   D V     S
Sbjct: 312 VGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGQRDGVDVVAKAEKS 371

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A K+A+A+  DVL +DTAGRL N   LM  + K+ RV+ R  P APH VL V
Sbjct: 372 DPAAVCFDAVKKAKAEDYDVLFVDTAGRLQNKVNLMNELEKIKRVITREIPDAPHEVLLV 431

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL Q ++F      +G+++TK+DGTARGG ++ I     + V ++G+GE + 
Sbjct: 432 LDATTGQNALNQAKLFKQSTDVSGIVLTKLDGTARGGIVLAIRNELHLAVKYVGLGEKVT 491

Query: 297 DLEPFVAKDFS 307
           DL PF A DF 
Sbjct: 492 DLRPFNANDFV 502


>gi|293607882|ref|ZP_06690185.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828455|gb|EFF86817.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122473|gb|ADY81996.1| cell division protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 370

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 135/309 (43%), Positives = 196/309 (63%), Gaps = 2/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVA 63
            V      +  ++ +G   T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   
Sbjct: 58  PVEQPKTGFFGRMKEGLTKTRRNFADGMVNILIGGKEIDDELLEEVEEQLLVADIGVEAT 117

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGV
Sbjct: 118 KTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGV 177

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ 
Sbjct: 178 GKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDISVVAQGHGADSASVI 237

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++AF+ A+AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TG
Sbjct: 238 FDAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTG 297

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ QV+ F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF 
Sbjct: 298 QNAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFS 357

Query: 303 AKDFSAVIT 311
           AK F A + 
Sbjct: 358 AKSFVAALF 366


>gi|258514470|ref|YP_003190692.1| signal recognition particle-docking protein FtsY [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778175|gb|ACV62069.1| signal recognition particle-docking protein FtsY [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 312

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 135/305 (44%), Positives = 192/305 (62%), Gaps = 4/305 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +    T     E I  +++ RR +D+G  EELE++LI +DIG+  A +IVE 
Sbjct: 1   MGFFSRLKESLTKTRKNFVEKIETLVTRRRAIDEGFYEELEEILIGADIGINTAVEIVEN 60

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTV 127
           L  +   + +     L +V  ELI  +L         + +     VILVVGVNGVGKTT 
Sbjct: 61  LRAEVKKRKIDDVETLKEVLKELICNILGEGGASTALNINEDGLTVILVVGVNGVGKTTT 120

Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           IGKL+    +  G KV+LAAGDTFR+AAIDQL+IW++R   + +  + G+D AA+AY+A 
Sbjct: 121 IGKLAYYFKEELGKKVLLAAGDTFRAAAIDQLEIWSNRVGVEMIKHKEGADPAAVAYDAI 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A++ DVLI+DTAGRLH  S LM  + K+ RV+ +  P AP  +L VLDATTGQNA+
Sbjct: 181 QAARARRSDVLIVDTAGRLHTKSNLMDELKKIKRVINKDMPEAPQEILLVLDATTGQNAV 240

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F   A  TG+ +TK+DGTA+GG +I I    KIPV  +G+GEGI DL PF  + F
Sbjct: 241 SQAKLFGEAADVTGIALTKLDGTAKGGVVISIKNALKIPVKLIGIGEGIEDLRPFEPEVF 300

Query: 307 SAVIT 311
           +  + 
Sbjct: 301 AEALF 305


>gi|221211185|ref|ZP_03584164.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans CGD1]
 gi|221168546|gb|EEE01014.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans CGD1]
          Length = 380

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 186/309 (60%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++DD + EELE  L+ SD GV   +
Sbjct: 78  QDASAKKSWLARLKTGLAKT----GSSITGVFVNTKIDDALYEELETALLMSDAGVDATE 133

Query: 65  KIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++  L  K R  +    Q+V   + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 134 YLLGALREKVRVGRLTDPQQVKSALRDLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAG 192

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 193 KTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLTVWGERNNVTVV-QQESGDPAAVIF 251

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 252 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQ 311

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 312 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSA 371

Query: 304 KDFSAVITG 312
           ++F+  + G
Sbjct: 372 EEFADALLG 380


>gi|229918603|ref|YP_002887249.1| signal recognition particle-docking protein FtsY [Exiguobacterium
           sp. AT1b]
 gi|229470032|gb|ACQ71804.1| signal recognition particle-docking protein FtsY [Exiguobacterium
           sp. AT1b]
          Length = 341

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 123/323 (38%), Positives = 189/323 (58%), Gaps = 4/323 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+ + +    +K T+G   T       + D++   R +D+   +ELEDLLI++D+GV 
Sbjct: 8   KEKLTTSTQEVSQKFTEGLTKTRDGFASAVNDLVYRFREVDEDFFDELEDLLIQADVGVT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               +VE+L  +   +++     + D + E++   L         +      VIL VGVN
Sbjct: 68  TTMDLVEDLKEEVKRRNLKDPVAVRDALVEVVANRLQEDESDRELNMQDGLTVILFVGVN 127

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ ++   G  VMLAAGDTFR+ AI+QL++W +R     +    GSD AA
Sbjct: 128 GVGKTTTIGKLAHQLKSEGRSVMLAAGDTFRAGAIEQLQVWGERVGVPVIRQTEGSDPAA 187

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+++ +DVLI DTAGRL N   LM  + K+ RV++R  P+ PH VL  LDAT
Sbjct: 188 VVFDAVQAAKSRNMDVLICDTAGRLQNKVNLMKELEKVKRVIEREVPNGPHEVLLALDAT 247

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q + F      +G+++TK+DGTA+GG ++ I     IPV ++G+GE I+DL+ 
Sbjct: 248 TGQNAMVQAKAFKEATNVSGIVLTKLDGTAKGGIVLAIRNELDIPVKYVGLGEKIDDLQE 307

Query: 301 FVAKDFSAVITG--CLDYGEEKI 321
           F  + F   + G    D  EE +
Sbjct: 308 FDPEQFVLGLFGDVFEDKNEEAL 330


>gi|152980422|ref|YP_001354829.1| signal recognition particle receptor [Janthinobacterium sp.
           Marseille]
 gi|151280499|gb|ABR88909.1| signal recognition particle receptor [Janthinobacterium sp.
           Marseille]
          Length = 419

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 127/307 (41%), Positives = 183/307 (59%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A +  SW+ +L  G + TS  L    T +    ++DD + EELE  L+ SD GV   Q +
Sbjct: 119 AEQKQSWMARLKVGLSKTSTNL----TTLFVGAKIDDDLYEELESALLMSDAGVDATQFL 174

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++ L  K   + ++    +   +  L+ +ML PL KP      H+P V+++ GVNG GKT
Sbjct: 175 LDALKRKVKNEKLTEAAQVKTALRSLLLEMLTPLQKPLVLG-QHQPLVMMITGVNGAGKT 233

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W  R +   +  E   D AA+A++A
Sbjct: 234 TTIGKLAKHLQAHNQSVLLAAGDTFRAAAREQLTVWGQRNNVTVIAQE-SGDPAAVAFDA 292

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              AQA+  +V+++DTAGRL     LM  + K+ RV+ +    APH +L ++D  TGQNA
Sbjct: 293 VHSAQARGTNVVMVDTAGRLPTQLHLMEELKKVKRVMAKGMASAPHEILLIIDGNTGQNA 352

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGL++TK+DGTA+GG L  I     IPVYF+GVGE I DL+PF A++
Sbjct: 353 LTQVKAFDDALGLTGLVVTKLDGTAKGGVLAAIARARPIPVYFIGVGEQIEDLQPFNAQE 412

Query: 306 FSAVITG 312
           F   + G
Sbjct: 413 FVEALLG 419


>gi|92115132|ref|YP_575060.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Chromohalobacter salexigens DSM 3043]
 gi|91798222|gb|ABE60361.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Chromohalobacter salexigens DSM 3043]
          Length = 474

 Score =  304 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 147/306 (48%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   +  I    +L +        E+   L+ +D+ + V +  VE +  +   
Sbjct: 2   FESLTERLSGTLKSITGQAKLTEDNIKDTLREVRRALLEADVALPVVKAFVERVRERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+ +  V + +  ++   ++         P VIL+ G+ G GKTT + KL
Sbjct: 62  QEVSRSLSPGQQFVKIVQQELEAIMGEANEAL--SLKSSPSVILMAGLQGAGKTTSVAKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KV++ + D +R AAIDQL+  A+    DF  S        +A  A K A+
Sbjct: 120 ARFLREREKKKVLVVSADVYRPAAIDQLETLANEVEVDFFPSTSAQRPVEIAQAAIKHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D++I+DTAGRL  +  +M  I  +           P   L V+DA TGQ+A    +
Sbjct: 180 IQFHDIVIVDTAGRLSVDQAMMEEIQALHGATT------PDETLFVVDAMTGQDAANTAQ 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK DG ARGG  + +      P+ F+G+GE ++ LEPF     ++ I
Sbjct: 234 AFHEALPLTGVILTKADGDARGGAALSVRHVTGKPIKFMGMGEKVDALEPFHPDRVASRI 293

Query: 311 TGCLDY 316
            G  D 
Sbjct: 294 LGMGDM 299


>gi|167468884|ref|ZP_02333588.1| cell division protein [Yersinia pestis FV-1]
          Length = 589

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 276 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 335

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 336 TTRKIITSLTEHTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 394

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 395 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 454

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 455 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 514

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 515 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 574

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 575 FKADEFIEALFARED 589


>gi|258625089|ref|ZP_05720008.1| signal recognition particle-docking protein FtsY [Vibrio mimicus
           VM603]
 gi|258582640|gb|EEW07470.1| signal recognition particle-docking protein FtsY [Vibrio mimicus
           VM603]
          Length = 400

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 121/308 (39%), Positives = 194/308 (62%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    +  +  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 89  EQEKPTEGFFARLKRSLSRTKANIGAGFFGLFKGKKIDDELFEELEEQLLIADVGMDTTT 148

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   +   +P+VIL+VGVNGVG
Sbjct: 149 KIITNLTAKASRQQLRDGEALYGLLKEEMAEILAQVEQPLVIETDKKPYVILMVGVNGVG 208

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 209 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 268

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 269 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 328

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 329 NAISQAKLFSEVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 388

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 389 QEFIDALF 396


>gi|254556539|ref|YP_003062956.1| signal recognition particle receptor FtsY [Lactobacillus plantarum
           JDM1]
 gi|254045466|gb|ACT62259.1| signal recognition particle receptor FtsY [Lactobacillus plantarum
           JDM1]
          Length = 515

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 176/311 (56%), Gaps = 5/311 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           ++ + A    +   +  +G   +     + I   +++ R +D+   ++LED LI SD+G 
Sbjct: 195 ADSESAEPEPTEAERYDEGLKKSRKTFGDRINAFLANFRHVDEAFFDDLEDTLIESDVGY 254

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF---SHRPHVILV 116
             A +I +EL  +   K+   ++ +  V  E +  M     +  +         P VIL 
Sbjct: 255 ETAMRISDELRDEVKLKNAKSKKEISSVIVEKLVDMYGEAGEGEDNSIHMAKSGPTVILF 314

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT IGK++      G KV+LAA DTFR+ AI QL++W  R   D V     S
Sbjct: 315 VGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGQRDGVDVVAKAEKS 374

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A K+A+A+  DVL +DTAGRL N   LM  + K+ RV+ R  P APH VL V
Sbjct: 375 DPAAVCFDAVKKAKAEDYDVLFVDTAGRLQNKVNLMNELEKIKRVITREIPDAPHEVLLV 434

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL Q ++F      +G+++TK+DGTARGG ++ I     + V ++G+GE + 
Sbjct: 435 LDATTGQNALNQAKLFKQSTDVSGIVLTKLDGTARGGIVLAIRNELHLAVKYVGLGEKVT 494

Query: 297 DLEPFVAKDFS 307
           DL PF A DF 
Sbjct: 495 DLRPFNANDFV 505


>gi|262363544|gb|ACY60265.1| cell division protein [Yersinia pestis D106004]
          Length = 544

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 231 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 290

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 291 TTRKIITSLTEHTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 349

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 350 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 409

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 410 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 469

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 470 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 529

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 530 FKADEFIEALFARED 544


>gi|229900065|ref|ZP_04515202.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229686845|gb|EEO78924.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis biovar Orientalis str. India 195]
          Length = 556

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 243 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 302

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 303 TTRKIITSLTEHTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 361

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 362 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 421

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 422 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 481

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 482 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 541

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 542 FKADEFIEALFARED 556


>gi|167401838|ref|ZP_02307326.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167048731|gb|EDR60139.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str.
           UG05-0454]
          Length = 562

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 249 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 308

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 309 TTRKIITSLTEHTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 367

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 368 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 427

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 428 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 487

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 488 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 547

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 548 FKADEFIEALFARED 562


>gi|167420847|ref|ZP_02312600.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|166960976|gb|EDR56997.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|320013587|gb|ADV97158.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 550

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 237 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 296

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 297 TTRKIITSLTEHTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 355

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 356 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 415

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 416 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 475

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 476 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 535

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 536 FKADEFIEALFARED 550


>gi|165926241|ref|ZP_02222073.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165921765|gb|EDR38962.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str.
           F1991016]
          Length = 568

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 255 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 314

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 315 TTRKIITSLTEHTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 373

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 374 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 433

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 434 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 493

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 494 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 553

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 554 FKADEFIEALFARED 568


>gi|145600681|ref|YP_001164757.1| cell division protein [Yersinia pestis Pestoides F]
 gi|153997129|ref|ZP_02022262.1| cell division protein [Yersinia pestis CA88-4125]
 gi|145212377|gb|ABP41784.1| signal recognition particle-docking protein FtsY [Yersinia pestis
           Pestoides F]
 gi|149289435|gb|EDM39513.1| cell division protein [Yersinia pestis CA88-4125]
          Length = 559

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 246 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 305

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 306 TTRKIITSLTEHTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 364

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 365 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 424

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 425 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 484

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 485 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 544

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 545 FKADEFIEALFARED 559


>gi|108810316|ref|YP_646083.1| cell division protein [Yersinia pestis Nepal516]
 gi|229900489|ref|ZP_04515618.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis Nepal516]
 gi|108773964|gb|ABG16483.1| signal recognition particle-docking protein FtsY [Yersinia pestis
           Nepal516]
 gi|229682508|gb|EEO78595.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis Nepal516]
          Length = 535

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 222 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 281

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 282 TTRKIITSLTEHTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 340

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 341 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 400

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 401 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 460

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 461 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 520

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 521 FKADEFIEALFARED 535


>gi|45442987|ref|NP_994526.1| cell division protein [Yersinia pestis biovar Microtus str. 91001]
 gi|45437854|gb|AAS63403.1| cell division protein [Yersinia pestis biovar Microtus str. 91001]
          Length = 547

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 234 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 293

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 294 TTRKIITSLTEHTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 352

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 353 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 412

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 413 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 472

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 473 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 532

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 533 FKADEFIEALFARED 547


>gi|218930816|ref|YP_002348691.1| cell division protein [Yersinia pestis CO92]
 gi|229837142|ref|ZP_04457307.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis Pestoides A]
 gi|229839502|ref|ZP_04459661.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|115349427|emb|CAL22400.1| cell division protein [Yersinia pestis CO92]
 gi|229695868|gb|EEO85915.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706085|gb|EEO92094.1| membrane-binding signal recognition particle (SRP) receptor
           [Yersinia pestis Pestoides A]
          Length = 541

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 228 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 287

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 288 TTRKIITSLTEHTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 346

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 347 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 406

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 407 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 466

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 467 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 526

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 527 FKADEFIEALFARED 541


>gi|108806206|ref|YP_650122.1| cell division protein [Yersinia pestis Antiqua]
 gi|165939137|ref|ZP_02227688.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011666|ref|ZP_02232564.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213536|ref|ZP_02239571.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|108778119|gb|ABG12177.1| signal recognition particle-docking protein FtsY [Yersinia pestis
           Antiqua]
 gi|165912910|gb|EDR31536.1| cell division protein FtsY [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165989435|gb|EDR41736.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205209|gb|EDR49689.1| cell division protein FtsY [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|262367473|gb|ACY64030.1| cell division protein [Yersinia pestis D182038]
          Length = 538

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 225 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 284

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 285 TTRKIITSLTEHTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 343

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 344 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 403

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 404 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 463

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 464 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 523

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 524 FKADEFIEALFARED 538


>gi|22124331|ref|NP_667754.1| cell division protein [Yersinia pestis KIM 10]
 gi|162420030|ref|YP_001605168.1| cell division protein [Yersinia pestis Angola]
 gi|167426293|ref|ZP_02318046.1| cell division protein FtsY [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|294505479|ref|YP_003569541.1| cell division membrane protein [Yersinia pestis Z176003]
 gi|21957106|gb|AAM84005.1|AE013642_6 cell division membrane protein [Yersinia pestis KIM 10]
 gi|162352845|gb|ABX86793.1| cell division protein FtsY [Yersinia pestis Angola]
 gi|167054812|gb|EDR64616.1| cell division protein FtsY [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|294355938|gb|ADE66279.1| cell division membrane protein [Yersinia pestis Z176003]
          Length = 553

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 240 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 299

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 300 TTRKIITSLTEHTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 358

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 359 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 418

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 419 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 478

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 479 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 538

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 539 FKADEFIEALFARED 553


>gi|239636286|ref|ZP_04677288.1| cell division protein FtsY [Staphylococcus warneri L37603]
 gi|239597641|gb|EEQ80136.1| cell division protein FtsY [Staphylococcus warneri L37603]
          Length = 414

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 124/321 (38%), Positives = 190/321 (59%), Gaps = 7/321 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 76  EEIEAQKIG--AKFKAGLEKSRENFQEQLNNLIARYRKVDEEFFEALEEMLITADVGFNT 133

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGV 119
             ++ EEL  +   +++     L    V +++        K    +    R +VIL+VGV
Sbjct: 134 VMQLTEELRAEAQRRNIQETEDLREVIVEKIVEIYHQEDDKSEAMNLEDGRLNVILMVGV 193

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI+QLK+W +R   + +    GSD A
Sbjct: 194 NGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIEQLKVWGERVGVEVISQSEGSDPA 253

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A   A+ K+VD+LI DTAGRL N S LM  + K+ RV+ R  P APH  L  LDA
Sbjct: 254 AVMYDAINAAKNKQVDILICDTAGRLQNKSNLMQELEKVKRVIGRAVPDAPHEALLCLDA 313

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q   F  V   +G+++TK+DGTA+GG ++ I    KIPV ++G+GE ++DL+
Sbjct: 314 TTGQNALSQARTFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELKIPVKYVGLGEKLDDLQ 373

Query: 300 PFVAKDFSAVITG-CLDYGEE 319
           PF  + +   +    ++  EE
Sbjct: 374 PFNPESYVYGLFADMIEQNEE 394


>gi|325129220|gb|EGC52060.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis OX99.30304]
          Length = 421

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRNRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|90412727|ref|ZP_01220728.1| putative cell division protein FtsY [Photobacterium profundum 3TCK]
 gi|90326302|gb|EAS42721.1| putative cell division protein FtsY [Photobacterium profundum 3TCK]
          Length = 438

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 197/309 (63%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++   +S  +  +L +G   T      G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 126 EQEKPQSDGFFARLMRGLKKTKTNFGSGFFGLFSGKKIDDELFEELEEQLLIADVGMDTT 185

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+E L  K   K++     LY  + E +  ML  + +P   D S +P VIL+VGVNGV
Sbjct: 186 LKIIENLTDKANRKELKDGEALYGLLKEELADMLSTVEQPLIVDTSQKPFVILMVGVNGV 245

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ 
Sbjct: 246 GKTTTIGKLAKQFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNGVPVVAQHTGADSASVI 305

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDV+I DTAGRL N   LM  + K++RV+K++DP APH ++  +DA TG
Sbjct: 306 FDAIESAKARNVDVVIADTAGRLQNKGHLMEELRKIVRVMKKVDPAAPHEIMLTVDAGTG 365

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  +G+ ++K+DGTA+GG +  I     IP+ ++G+GEGI+DL PFV
Sbjct: 366 QNAISQAKLFSEVAPVSGITISKLDGTAKGGVIFAIADQFSIPIRYIGIGEGIDDLRPFV 425

Query: 303 AKDFSAVIT 311
           A +F   + 
Sbjct: 426 ADEFIEALF 434


>gi|255319577|ref|ZP_05360790.1| signal recognition particle-docking protein FtsY [Acinetobacter
           radioresistens SK82]
 gi|255303375|gb|EET82579.1| signal recognition particle-docking protein FtsY [Acinetobacter
           radioresistens SK82]
          Length = 366

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 139/307 (45%), Positives = 198/307 (64%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
                S+  ++ +G   T   L +G+ +I I  + +DD + EE+E+ L+ +DIGV   + 
Sbjct: 56  EKSKGSFFSRMKQGLTKTRKNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGVEATKT 115

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VILVVGVNGVGK
Sbjct: 116 IINNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKNPYVILVVGVNGVGK 175

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++
Sbjct: 176 TTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVQVVAQGHGADSASVIFD 235

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           AF+ A+AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQN
Sbjct: 236 AFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQN 295

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ QV+MF    G TGL +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF AK
Sbjct: 296 AINQVQMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAK 355

Query: 305 DFSAVIT 311
            F A + 
Sbjct: 356 AFVAALF 362


>gi|330447182|ref|ZP_08310832.1| signal recognition particle-docking protein FtsY [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491373|dbj|GAA05329.1| signal recognition particle-docking protein FtsY [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 458

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/309 (40%), Positives = 196/309 (63%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++   +S  +  +L +G   T      G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 146 EQEKPKSEGFFARLMRGLKKTKTNFGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTT 205

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+E L  K   K++     LY  + + +  ML  + +P   D S +P+VIL+VGVNGV
Sbjct: 206 LKIIENLTDKASRKELKDGEALYGLLKDELADMLSKVEQPLVVDTSKKPYVILMVGVNGV 265

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ 
Sbjct: 266 GKTTTIGKLAKQFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNHVPVVAQHTGADSASVI 325

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+AK +DV+I DTAGRL N   LM  + K++RV+K++D  APH ++  +DA TG
Sbjct: 326 FDAIESAKAKNIDVVIADTAGRLQNKGNLMEELRKIVRVMKKVDVDAPHEIMLTVDAGTG 385

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  +G+ +TK+DGTA+GG +  I     IP+ ++G+GEGI+DL PF 
Sbjct: 386 QNAISQAKLFSDVAPVSGITITKLDGTAKGGVIFAIADQFNIPIRYIGIGEGIDDLRPFA 445

Query: 303 AKDFSAVIT 311
           A +F   + 
Sbjct: 446 ADEFIEALF 454


>gi|315178771|gb|ADT85685.1| signal recognition particle GTPase [Vibrio furnissii NCTC 11218]
          Length = 403

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 197/309 (63%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 91  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 150

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K   + +     LY V  + + ++L  + +P   D S  P VIL+VGVNGV
Sbjct: 151 LKIIASLTEKSSRQQLRDGEALYGVLKDEMAEILSTVEQPLVIDSSKTPFVILMVGVNGV 210

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL+IW +R +   +    G+D+A++ 
Sbjct: 211 GKTTTIGKLAKQFQAEGKKVMLAAGDTFRAAAVEQLQIWGERNNVPVIAQHTGADSASVI 270

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 271 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 330

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PF 
Sbjct: 331 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEGIDDLRPFA 390

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 391 TQEFIDALF 399


>gi|254671754|emb|CBA09584.1| cell division protein [Neisseria meningitidis alpha153]
          Length = 421

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|170026190|ref|YP_001722695.1| signal recognition particle-docking protein FtsY [Yersinia
           pseudotuberculosis YPIII]
 gi|169752724|gb|ACA70242.1| signal recognition particle-docking protein FtsY [Yersinia
           pseudotuberculosis YPIII]
          Length = 523

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 195/315 (61%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 210 AQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVE 269

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             +KI+  L      K +     LY  + E + ++L  + KP +      P+VIL+VGVN
Sbjct: 270 TTRKIITSLTEHTSRKQLKDADALYGKLKEEMSEILSKVDKPLDVS-GKSPYVILMVGVN 328

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A+
Sbjct: 329 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNKIAVVAQHTGADSAS 388

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 389 VIFDAIQAAKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDAS 448

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL P
Sbjct: 449 TGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRP 508

Query: 301 FVAKDFSAVITGCLD 315
           F A +F   +    D
Sbjct: 509 FKADEFIEALFARED 523


>gi|291614826|ref|YP_003524983.1| signal recognition particle-docking protein FtsY [Sideroxydans
           lithotrophicus ES-1]
 gi|291584938|gb|ADE12596.1| signal recognition particle-docking protein FtsY [Sideroxydans
           lithotrophicus ES-1]
          Length = 315

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 133/314 (42%), Positives = 191/314 (60%), Gaps = 6/314 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           + N   ++ES SW+ +LT   A T  +L      ++   ++DD + EELE +LI +D+G+
Sbjct: 5   LKNTPASAESKSWLSRLTGSLARTGGQLSSL---LVPGGKIDDELYEELETILITADVGM 61

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGV 119
              + ++ ++      + ++    L +        L+ PL+KP +   S RP VI++ GV
Sbjct: 62  DATRSLLADVRRHVKEQRLTEAGQLKEALAHALLKLLQPLAKPLDVGAS-RPFVIMLCGV 120

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+K   + G  V+LAAGDTFR+AA +QL  W  R     +  +   DAA
Sbjct: 121 NGAGKTTSIGKLAKHFQNQGKSVLLAAGDTFRAAAREQLMEWGRRNDVTVIAQQ-SGDAA 179

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A + AQA+ +DV++ DTAGRL   + LM  I K+ RV+ +  P APH VL VLDA
Sbjct: 180 AVIYDAVQAAQARGIDVVLADTAGRLTTQAHLMEEIKKVKRVIAKALPGAPHEVLLVLDA 239

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNAL QV+ F      TGL++TK+DGTA+GG +  I   H IPV F+GVGE ++DL 
Sbjct: 240 NTGQNALSQVKSFDDALQVTGLVLTKLDGTAKGGVIAAIAKAHPIPVRFIGVGEALDDLR 299

Query: 300 PFVAKDFSAVITGC 313
           PFVA+DF A + G 
Sbjct: 300 PFVAEDFVAALLGM 313


>gi|167892738|ref|ZP_02480140.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 7894]
          Length = 354

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ 
Sbjct: 57  KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 112

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 113 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 171

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 172 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 230

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 231 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 290

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 291 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 350

Query: 309 VITG 312
            + G
Sbjct: 351 ALLG 354


>gi|114321806|ref|YP_743489.1| signal recognition particle-docking protein FtsY [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114228200|gb|ABI57999.1| signal recognition particle-docking protein FtsY [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 389

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 130/314 (41%), Positives = 185/314 (58%), Gaps = 2/314 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQK 65
                    +L  G + T   L EGI  +   S+ +DD + EELE  L+ +D+GV   Q+
Sbjct: 73  EPRKQGLFARLRAGLSRTRSGLTEGIASLFLGSKTIDDDLLEELETQLLLADVGVEATQR 132

Query: 66  IVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L  +    ++     L   + E +  +L P   P       +P VIL+VG+NG GK
Sbjct: 133 IIDGLTARLRRAELKDTDALFQALKEDMTAILSPCEAPLELPNEPKPFVILMVGINGAGK 192

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+++  D G +VMLAAGDTFR+AA++QL+ W +R +   +    G+DAA++ ++
Sbjct: 193 TTTIGKLARRFGDQGKRVMLAAGDTFRAAAVEQLQAWGERNNTPVIAQHTGADAASVVFD 252

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
            ++ A+A+  DVLI DTAGRLH  S LM  + K+ RVL + DP APH  L VLDA  GQN
Sbjct: 253 GWQAAKARGSDVLIADTAGRLHTQSNLMEELRKIKRVLGKQDPTAPHETLLVLDAGNGQN 312

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q   FH   G  G+++TK+DGTARGG +  I    ++P+ F+GVGE   DL PFVA 
Sbjct: 313 ALAQAREFHQAIGLDGVVITKLDGTARGGVIFAIAEQLRLPIRFIGVGESAEDLRPFVAA 372

Query: 305 DFSAVITGCLDYGE 318
           DF   +    D G+
Sbjct: 373 DFVEALLQRDDQGQ 386


>gi|308180482|ref|YP_003924610.1| cell division protein FtsY [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045973|gb|ADN98516.1| cell division protein FtsY [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 515

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 176/311 (56%), Gaps = 5/311 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           ++ + A    +   +  +G   +     + I   +++ R +D+   ++LED LI SD+G 
Sbjct: 195 ADSESAEPEPTEAERYDEGLKKSRKTFGDRINAFLANFRHVDEAFFDDLEDTLIESDVGY 254

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF---SHRPHVILV 116
             A +I +EL  +   K+   ++ +  V  E +  M     +  +         P VIL 
Sbjct: 255 ETAMRISDELRDEVKLKNAKSKKEISSVIVEKLVDMYGEAGEGEDNSIHMAKSGPTVILF 314

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT IGK++      G KV+LAA DTFR+ AI QL++W  R   D V     S
Sbjct: 315 VGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGQRDGVDVVAKAEKS 374

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A K+A+A+  DVL +DTAGRL N   LM  + K+ RV+ R  P APH VL V
Sbjct: 375 DPAAVCFDAVKKAKAEDYDVLFVDTAGRLQNKVNLMNELEKIKRVITREIPDAPHEVLLV 434

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL Q ++F      +G+++TK+DGTARGG ++ I     + V ++G+GE + 
Sbjct: 435 LDATTGQNALNQAKLFKQSTDVSGIVLTKLDGTARGGIVLAIRNELHLAVKYVGLGEKVT 494

Query: 297 DLEPFVAKDFS 307
           DL PF A DF 
Sbjct: 495 DLRPFNANDFV 505


>gi|269961511|ref|ZP_06175874.1| signal recognition particle-docking protein FtsY [Vibrio harveyi
           1DA3]
 gi|269833740|gb|EEZ87836.1| signal recognition particle-docking protein FtsY [Vibrio harveyi
           1DA3]
          Length = 416

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/309 (40%), Positives = 198/309 (64%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++D+ + EELE+ L+ +D+G+   
Sbjct: 104 QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMNTT 163

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY  + E + ++L  + +P   D +  P+VIL+VGVNGV
Sbjct: 164 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDTNKTPYVILMVGVNGV 223

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 224 GKTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 283

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 284 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 343

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI DL PF 
Sbjct: 344 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFE 403

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 404 TQEFIDALF 412


>gi|15675985|ref|NP_273111.1| signal recognition particle protein [Neisseria meningitidis MC58]
 gi|9910689|sp|P57011|FTSY_NEIMB RecName: Full=Cell division protein ftsY homolog
 gi|7225266|gb|AAF40516.1| signal recognition particle protein [Neisseria meningitidis MC58]
 gi|316983616|gb|EFV62598.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis H44/76]
 gi|325199276|gb|ADY94731.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis H44/76]
          Length = 421

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|170734154|ref|YP_001766101.1| signal recognition particle-docking protein FtsY [Burkholderia
           cenocepacia MC0-3]
 gi|169817396|gb|ACA91979.1| signal recognition particle-docking protein FtsY [Burkholderia
           cenocepacia MC0-3]
          Length = 388

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 187/309 (60%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   +
Sbjct: 86  QDASAKKSWLARLKTGLAKT----GSSITGVFVNTKIDEDLYEELETALLMSDAGVDATE 141

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +++ L  K  A  ++  + + D + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 142 YLLDALREKVRAGRLTDPQQVKDALHDLLVELLTPLEKSLMLGRAQ-PLVMMITGVNGAG 200

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 201 KTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV-QQESGDPAAVIF 259

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 260 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQ 319

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 320 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSA 379

Query: 304 KDFSAVITG 312
            +F+  + G
Sbjct: 380 VEFADALLG 388


>gi|218767303|ref|YP_002341815.1| probable signal recognition particle protein [Neisseria
           meningitidis Z2491]
 gi|9910688|sp|P57010|FTSY_NEIMA RecName: Full=Cell division protein ftsY homolog
 gi|121051311|emb|CAM07596.1| probable signal recognition particle protein [Neisseria
           meningitidis Z2491]
          Length = 421

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|299769869|ref|YP_003731895.1| signal recognition particle-docking protein FtsY [Acinetobacter sp.
           DR1]
 gi|298699957|gb|ADI90522.1| signal recognition particle-docking protein FtsY [Acinetobacter sp.
           DR1]
          Length = 370

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 135/308 (43%), Positives = 196/308 (63%), Gaps = 2/308 (0%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           V      +  ++ +G   T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   +
Sbjct: 59  VEQPKTGFFGRMKEGLTKTRRNFADGMVNILIGGKEIDDELLEEVEEQLLVADIGVEATK 118

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVG
Sbjct: 119 TIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVG 178

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ +
Sbjct: 179 KTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDISVVAQGHGADSASVIF 238

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +AF+ A+AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQ
Sbjct: 239 DAFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQ 298

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ QV+ F    G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF A
Sbjct: 299 NAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSA 358

Query: 304 KDFSAVIT 311
           K F A + 
Sbjct: 359 KSFVAALF 366


>gi|167822657|ref|ZP_02454128.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 9]
          Length = 347

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 128/304 (42%), Positives = 185/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  
Sbjct: 50  KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGA 105

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D + EL+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 106 LREKVRAGRLTDPQQVKDALRELLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 164

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 165 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 223

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 224 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 283

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 284 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 343

Query: 309 VITG 312
            + G
Sbjct: 344 ALLG 347


>gi|223043789|ref|ZP_03613832.1| cell division protein FtsY [Staphylococcus capitis SK14]
 gi|222442886|gb|EEE48988.1| cell division protein FtsY [Staphylococcus capitis SK14]
          Length = 419

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 133/328 (40%), Positives = 194/328 (59%), Gaps = 13/328 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 79  EEIEAQKIG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 136

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKML---MPLSKPFNWDFSHRPHVILVVG 118
             K+ +EL T+   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 137 VMKLTDELRTEAQRRNIQETEDLREVIVEKIVEIYHQEDDHSEAMNLE-DGRLNVILMVG 195

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI QLK+W DR   + V    GSD 
Sbjct: 196 VNGVGKTTTIGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLKVWGDRVGVEVVSQSEGSDP 255

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LD
Sbjct: 256 AAVVYDAINAAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAIPDAPHEALLCLD 315

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 316 ATTGQNALSQARSFKDVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDL 375

Query: 299 EPFVAKD-----FSAVITGCLDYGEEKI 321
           +PF  +      F+ +I    D  +E I
Sbjct: 376 QPFNPESYVYGLFADMIEQNEDIPDELI 403


>gi|161869063|ref|YP_001598229.1| signal recognition particle protein [Neisseria meningitidis 053442]
 gi|161594616|gb|ABX72276.1| signal recognition particle protein [Neisseria meningitidis 053442]
          Length = 421

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|325197349|gb|ADY92805.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis G2136]
 gi|325203177|gb|ADY98630.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis M01-240355]
          Length = 421

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 184/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGE I+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGESIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|298528315|ref|ZP_07015719.1| signal recognition particle-docking protein FtsY
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511967|gb|EFI35869.1| signal recognition particle-docking protein FtsY
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 435

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 129/314 (41%), Positives = 190/314 (60%), Gaps = 5/314 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59
           +  +    E      KL+ G + T  +L   I  ++SS    D+   EELE++LI SD+G
Sbjct: 125 LDLEDEEDEKSRLFIKLSHGLSKTKAQLSRQIDQLLSSSTSFDEAFWEELEEILIMSDVG 184

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVG 118
              A ++V++L T+   + V   +   +  +L+ K L     +P        P VIL++G
Sbjct: 185 HKAATELVQKLRTEVSGQSVDDPQ---EFKQLLGKELAAFFPRPQKRIKPDPPEVILMIG 241

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT I KL+ +    G +VM+AAGDTFR+AAI+QL IWA+R  A+F     G+D 
Sbjct: 242 VNGVGKTTTIAKLAHRDRMKGRRVMIAAGDTFRAAAIEQLGIWAERADAEFYAKSHGADP 301

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++AYEA  +A A+  DVL +DTAGRLH  S LM  + KM  V+++  P +PH  + VLD
Sbjct: 302 ASVAYEALDKAVAEGTDVLYVDTAGRLHTKSDLMQELKKMKSVMQKKRPGSPHRTILVLD 361

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q E+F        +I+TK+DGTA+GG ++ I + H+IP+ F+G+GE + DL
Sbjct: 362 ATTGQNAMSQTELFAREINIDEIILTKLDGTAKGGVMVAIALQHQIPITFIGLGEKMEDL 421

Query: 299 EPFVAKDFSAVITG 312
            PF  + F+  + G
Sbjct: 422 RPFEPESFARALLG 435


>gi|325129203|gb|EGC52048.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis N1568]
          Length = 421

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|308388268|gb|ADO30588.1| probable signal recognition particle protein [Neisseria
           meningitidis alpha710]
 gi|319409567|emb|CBY89858.1| cell division protein FtsY [Neisseria meningitidis WUE 2594]
 gi|325133204|gb|EGC55874.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis M6190]
          Length = 421

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|327441088|dbj|BAK17453.1| signal recognition particle GTPase [Solibacillus silvestris
           StLB046]
          Length = 414

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 125/323 (38%), Positives = 188/323 (58%), Gaps = 5/323 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            Q     + S  +K   G   T       + D+++  R++D+   EELED+L+++D+G  
Sbjct: 88  EQPQKESAWSITQKFKAGLEKTRNSFTSKVNDLVARYRKVDEDFFEELEDVLLQADVGFE 147

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSK---PFNWDFSHRPHVILVV 117
              +++++L  +   +++     +   +SE + ++     +     N   S    VIL V
Sbjct: 148 TVMELMDKLRFEVQRQNIKDTNGIQAIISEKLVEIYESGEENLTELNIQQSGDLTVILFV 207

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ ++   G  VMLAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 208 GVNGVGKTTTIGKLAHRLKSEGKSVMLAAGDTFRAGAIEQLQVWGDRVGVEVIAQSEGSD 267

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+ + VD+LI DTAGRL N   LM  + K+ RV+ R  P APH VL  L
Sbjct: 268 PAAVMYDAIRAAKNRGVDILICDTAGRLQNKVNLMNELEKVHRVISREIPDAPHEVLLAL 327

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQNAL Q +MF      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++D
Sbjct: 328 DATTGQNALVQAQMFKEATNVTGIVLTKLDGTAKGGIVLAIRNKLHIPVKFVGLGEKMDD 387

Query: 298 LEPFVAKDFSAVITGCLDYGEEK 320
           L+PF A+ +   +       E K
Sbjct: 388 LQPFDAERYVYGLFAEGLEKELK 410


>gi|307728375|ref|YP_003905599.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           CCGE1003]
 gi|307582910|gb|ADN56308.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           CCGE1003]
          Length = 395

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 131/309 (42%), Positives = 185/309 (59%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G + TS  L    T I    ++D+ + EELE  L+ SD GV   +
Sbjct: 92  QDASAKRSWLTRLKTGLSKTSSSL----TGIFVGTKIDEDLYEELETALLMSDAGVDATE 147

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++E L  K   + ++  + +   +  L+  +L PL K      + +P V+++ GVNG G
Sbjct: 148 FLLEALREKVRTERLTEPQQVKAALRALLVDLLKPLEKSLMLGRA-KPLVMMIAGVNGAG 206

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL IW  R +   V  E   D AA+ +
Sbjct: 207 KTTSIGKLAKHLQSFNQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVAQE-SGDPAAVIF 265

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 266 DAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQ 325

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A
Sbjct: 326 NALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGERVEDLQPFSA 385

Query: 304 KDFSAVITG 312
           ++FS  + G
Sbjct: 386 EEFSDALLG 394


>gi|260767577|ref|ZP_05876513.1| signal recognition particle receptor protein FtsY [Vibrio furnissii
           CIP 102972]
 gi|260617477|gb|EEX42660.1| signal recognition particle receptor protein FtsY [Vibrio furnissii
           CIP 102972]
          Length = 405

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 197/309 (63%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 93  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLVADVGMDTT 152

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K   + +     LY V  + + ++L  + +P   D S  P VIL+VGVNGV
Sbjct: 153 LKIIASLTEKSSRQQLRDGEALYGVLKDEMAEILSTVEQPLVIDSSKTPFVILMVGVNGV 212

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL+IW +R +   +    G+D+A++ 
Sbjct: 213 GKTTTIGKLAKQFQAEGKKVMLAAGDTFRAAAVEQLQIWGERNNVPVIAQHTGADSASVI 272

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 273 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 332

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PF 
Sbjct: 333 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEGIDDLRPFA 392

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 393 TQEFIDALF 401


>gi|261379617|ref|ZP_05984190.1| signal recognition particle-docking protein FtsY [Neisseria
           subflava NJ9703]
 gi|284798099|gb|EFC53446.1| signal recognition particle-docking protein FtsY [Neisseria
           subflava NJ9703]
          Length = 510

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 187/311 (60%), Gaps = 2/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +        LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+ 
Sbjct: 200 APAPAEEHKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGME 259

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             + +++++  +   K +     L   + + ++ ++ PL KP     +  P VI++ G+N
Sbjct: 260 ATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETREPFVIMLAGIN 319

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA
Sbjct: 320 GAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAA 378

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA 
Sbjct: 379 VCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDAN 438

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNA+ QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL P
Sbjct: 439 IGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRP 498

Query: 301 FVAKDFSAVIT 311
           F AK F   + 
Sbjct: 499 FNAKAFVDALL 509


>gi|113972101|ref|YP_735894.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           MR-4]
 gi|113886785|gb|ABI40837.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           MR-4]
          Length = 582

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/311 (40%), Positives = 197/311 (63%), Gaps = 1/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
              +      S+  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV 
Sbjct: 265 PEPQAKPAKESFFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVE 324

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              ++++ L      K +     LYD+  + + K L P++ P   + ++ P+VIL+VGVN
Sbjct: 325 TTSRLIQSLTEHASRKQLKDAEALYDLLRDEMQKTLDPVAIPLVPENANGPYVILMVGVN 384

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A+
Sbjct: 385 GVGKTTTIGKLAKQYQRQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSAS 444

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+K+D+LI DTAGRL N S LM  + K++RV+K+LD  APH V+  LDA+
Sbjct: 445 VLFDALQAAKARKIDILIADTAGRLQNKSHLMEELKKVVRVMKKLDLEAPHEVMLTLDAS 504

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F    G TG+ ++K+DGTA+GG +  I    KIP+ ++GVGE I+DL  
Sbjct: 505 TGQNAISQAQLFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRT 564

Query: 301 FVAKDFSAVIT 311
           F +K+F   + 
Sbjct: 565 FNSKEFIDALF 575


>gi|242373527|ref|ZP_04819101.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus
           epidermidis M23864:W1]
 gi|242348890|gb|EES40492.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus
           epidermidis M23864:W1]
          Length = 418

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 130/326 (39%), Positives = 193/326 (59%), Gaps = 13/326 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 79  EEIEAQKIG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 136

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKML---MPLSKPFNWDFSHRPHVILVVG 118
             K+ +EL T+   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 137 VMKLTDELRTEAQRRNIQETEDLREVIVEKIVEIYHQEDEHSEAMNIE-DGRLNVILMVG 195

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI QL++W +R   + V    GSD 
Sbjct: 196 VNGVGKTTTIGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLQVWGERVGVEVVSQSEGSDP 255

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LD
Sbjct: 256 AAVVYDAINAAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAIPDAPHEALLCLD 315

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 316 ATTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDL 375

Query: 299 EPFVAKD-----FSAVITGCLDYGEE 319
           +PF  +      F+ +I    D  +E
Sbjct: 376 QPFNPESYVYGLFADMIEQNEDIPDE 401


>gi|262379876|ref|ZP_06073032.1| signal recognition particle-docking protein FtsY [Acinetobacter
           radioresistens SH164]
 gi|262299333|gb|EEY87246.1| signal recognition particle-docking protein FtsY [Acinetobacter
           radioresistens SH164]
          Length = 366

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 138/307 (44%), Positives = 197/307 (64%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
                 +  ++ +G   T   L +G+ +I I  + +DD + EE+E+ L+ +DIGV   + 
Sbjct: 56  EKSKGGFFSRMKQGLTKTRKNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGVEATKT 115

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VILVVGVNGVGK
Sbjct: 116 IINNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKNPYVILVVGVNGVGK 175

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++
Sbjct: 176 TTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDVQVVAQGHGADSASVIFD 235

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           AF+ A+AK +DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQN
Sbjct: 236 AFESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQN 295

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ QV+MF    G TGL +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF AK
Sbjct: 296 AINQVQMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAK 355

Query: 305 DFSAVIT 311
            F A + 
Sbjct: 356 AFVAALF 362


>gi|161523672|ref|YP_001578684.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans ATCC 17616]
 gi|189351559|ref|YP_001947187.1| signal recognition particle receptor [Burkholderia multivorans ATCC
           17616]
 gi|160341101|gb|ABX14187.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans ATCC 17616]
 gi|189335581|dbj|BAG44651.1| signal recognition particle receptor [Burkholderia multivorans ATCC
           17616]
          Length = 380

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 186/309 (60%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++DD + EELE  L+ SD GV   +
Sbjct: 78  QDASAKKSWLARLKTGLAKT----GSSITGVFVNTKIDDALYEELETALLMSDAGVDATE 133

Query: 65  KIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++  L  K R  +    Q+V   + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 134 YLLGALREKVRVGRLTDPQQVKSALRDLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAG 192

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 193 KTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLTVWGERNNVTVV-QQESGDPAAVIF 251

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 252 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQ 311

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 312 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSA 371

Query: 304 KDFSAVITG 312
           ++F+  + G
Sbjct: 372 EEFADALLG 380


>gi|325922810|ref|ZP_08184538.1| cell division protein FtsY [Xanthomonas gardneri ATCC 19865]
 gi|325546697|gb|EGD17823.1| cell division protein FtsY [Xanthomonas gardneri ATCC 19865]
          Length = 569

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 125/304 (41%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  LI +D+G+     +VE
Sbjct: 266 KQGWRDRLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALVE 319

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  +++ V  Q +   +   +  +L P+SKP   D S +P VIL VGVNGVGKTT 
Sbjct: 320 GLRKRMKSREFVDAQAMFKALRADLIALLQPVSKPLVIDRSVKPFVILTVGVNGVGKTTT 379

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W DR     +     +DAA++A++A +
Sbjct: 380 IGKLAKRFKDEGNSLMLAAGDTFRAAAVAQLQAWGDRNGVAVIAQGQNADAASVAFDALQ 439

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  +VLI DTAGRLH  + LM  +GK+ RVL ++D  APH VL V+D TTGQNA+ 
Sbjct: 440 AAKARGTEVLIADTAGRLHTQTGLMNELGKIRRVLGKIDAAAPHEVLMVIDGTTGQNAIS 499

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F    F 
Sbjct: 500 QLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFNIPIRFAGIGERPEDLRVFDPVAFV 559

Query: 308 AVIT 311
             + 
Sbjct: 560 DALL 563


>gi|49483398|ref|YP_040622.1| cell division protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282903789|ref|ZP_06311677.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905553|ref|ZP_06313408.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908528|ref|ZP_06316358.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|283957977|ref|ZP_06375428.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|295427721|ref|ZP_06820353.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591320|ref|ZP_06949958.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           MN8]
 gi|49241527|emb|CAG40213.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282327590|gb|EFB57873.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330845|gb|EFB60359.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595407|gb|EFC00371.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790126|gb|EFC28943.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|295128079|gb|EFG57713.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576206|gb|EFH94922.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           MN8]
 gi|315194123|gb|EFU24516.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 416

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 129/322 (40%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++IS  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLISRYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  EE
Sbjct: 374 QPFNPESYVYGLFADMIEQNEE 395


>gi|28378331|ref|NP_785223.1| signal recognition particle receptor FtsY [Lactobacillus plantarum
           WCFS1]
 gi|28271166|emb|CAD64071.1| signal recognition particle receptor FtsY [Lactobacillus plantarum
           WCFS1]
          Length = 515

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 176/311 (56%), Gaps = 5/311 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           ++ + A    +   +  +G   +     + I   +++ R +D+   ++LED LI SD+G 
Sbjct: 195 ADSESAEPEPTEAERYDEGLKKSRKTFGDRINAFLANFRHVDEAFFDDLEDTLIESDVGY 254

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF---SHRPHVILV 116
             A +I +EL  +   K+   ++ +  V  E +  M     +  +         P VIL 
Sbjct: 255 ETAMRISDELRDEVKLKNAKSKKEISSVIVEKLVDMYGEAGEGEDNSIHMAKSGPTVILF 314

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT IGK++      G KV+LAA DTFR+ AI QL++W  R   D V     S
Sbjct: 315 VGVNGAGKTTTIGKMANMYKQQGKKVLLAACDTFRAGAIQQLQVWGQRDGVDVVAKAEKS 374

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A K+A+A+  DVL +DTAGRL N   LM  + K+ RV+ R  P APH VL V
Sbjct: 375 DPAAVCFDAVKKAKAEDYDVLFVDTAGRLQNKVNLMNELEKIKRVITREIPDAPHEVLLV 434

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL Q ++F      +G+++TK+DGTARGG ++ I     + V ++G+GE + 
Sbjct: 435 LDATTGQNALNQAKLFKQSTDVSGIVLTKLDGTARGGIVLAIRNELHLAVKYVGLGEKVT 494

Query: 297 DLEPFVAKDFS 307
           DL PF A DF 
Sbjct: 495 DLRPFNANDFV 505


>gi|117922404|ref|YP_871596.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           ANA-3]
 gi|117614736|gb|ABK50190.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           ANA-3]
          Length = 562

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 126/311 (40%), Positives = 198/311 (63%), Gaps = 1/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
              +      S+  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV 
Sbjct: 245 PEPQAKPAKESFFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVE 304

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              ++++ L      K +     LY++  + + K L P++ P   + ++ P+VIL+VGVN
Sbjct: 305 TTSRLIKSLTEHASRKQLKDAEALYELLRDEMQKTLDPVAIPLVPENANGPYVILMVGVN 364

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A+
Sbjct: 365 GVGKTTTIGKLAKQYQRQGKTVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSAS 424

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+K+D+LI DTAGRL N S LM  + K++RV+K+LDP APH V+  LDA+
Sbjct: 425 VLFDALQAAKARKIDILIADTAGRLQNKSHLMEELKKVVRVMKKLDPEAPHEVMLTLDAS 484

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F    G TG+ ++K+DGTA+GG +  I    KIP+ ++GVGE I+DL  
Sbjct: 485 TGQNAISQAQLFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRT 544

Query: 301 FVAKDFSAVIT 311
           F +K+F   + 
Sbjct: 545 FNSKEFIDALF 555


>gi|300718827|ref|YP_003743630.1| cell division protein [Erwinia billingiae Eb661]
 gi|299064663|emb|CAX61783.1| Cell division protein [Erwinia billingiae Eb661]
          Length = 521

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 192/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 210 EQQRPTKEGFFARLKRSLVKTRQNLGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETT 269

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           ++I++ L  +   K +     LY  + + + ++L  + +P +      P VIL+VGVNGV
Sbjct: 270 RRIIKNLTQQANRKQLRDAEALYGLLKQEMSEILAKVEEPLDV-TGKTPFVILMVGVNGV 328

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +  + GSD+A++ 
Sbjct: 329 GKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQQTGSDSASVI 388

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K+ RV+K+LD  APH V+  +DA+TG
Sbjct: 389 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDQAPHEVMLTIDASTG 448

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL  F 
Sbjct: 449 QNAISQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFSIPIRYIGVGEGIEDLRAFK 508

Query: 303 AKDFSAVITGCLD 315
           A DF   +    D
Sbjct: 509 ADDFIEALFARED 521


>gi|121633921|ref|YP_974166.1| signal recognition particle protein [Neisseria meningitidis FAM18]
 gi|120865627|emb|CAM09347.1| probable signal recognition particle protein [Neisseria
           meningitidis FAM18]
 gi|325139277|gb|EGC61821.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis ES14902]
          Length = 421

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|314933413|ref|ZP_07840778.1| cell division protein FtsY [Staphylococcus caprae C87]
 gi|313653563|gb|EFS17320.1| cell division protein FtsY [Staphylococcus caprae C87]
          Length = 419

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 133/328 (40%), Positives = 194/328 (59%), Gaps = 13/328 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 79  EEIEAQKIG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 136

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKML---MPLSKPFNWDFSHRPHVILVVG 118
             K+ +EL T+   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 137 VMKLTDELRTEAQRRNIQETEDLREVIVEKIVEIYHQEDDHSEAMNLE-DGRLNVILMVG 195

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI QLK+W DR   + V    GSD 
Sbjct: 196 VNGVGKTTTIGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLKVWGDRVGVEVVSQSEGSDP 255

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LD
Sbjct: 256 AAVVYDAINAAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRSIPDAPHEALLCLD 315

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 316 ATTGQNALSQARSFKDVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDL 375

Query: 299 EPFVAKD-----FSAVITGCLDYGEEKI 321
           +PF  +      F+ +I    D  +E I
Sbjct: 376 QPFNPESYVYGLFADMIEQNEDIPDELI 403


>gi|254251373|ref|ZP_04944691.1| Signal recognition particle GTPase [Burkholderia dolosa AUO158]
 gi|124893982|gb|EAY67862.1| Signal recognition particle GTPase [Burkholderia dolosa AUO158]
          Length = 386

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 186/309 (60%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   +
Sbjct: 84  QDASAKKSWLARLKTGLAKT----GSSITGVFVNTKIDEDLYEELETALLMSDAGVDATE 139

Query: 65  KIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++  L  K R  +    Q+V   + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 140 YLLGALREKVRVGRLTDPQQVKSALRDLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAG 198

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 199 KTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV-QQESGDPAAVIF 257

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 258 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQ 317

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 318 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSA 377

Query: 304 KDFSAVITG 312
           ++F+  + G
Sbjct: 378 EEFADALLG 386


>gi|261856138|ref|YP_003263421.1| signal recognition particle-docking protein FtsY [Halothiobacillus
           neapolitanus c2]
 gi|261836607|gb|ACX96374.1| signal recognition particle-docking protein FtsY [Halothiobacillus
           neapolitanus c2]
          Length = 391

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 187/316 (59%), Gaps = 5/316 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60
           + Q V  E      +  +  A       EG+ D+   ++ +DD + EE+E  LI +D+G 
Sbjct: 78  APQPVTQEKPK--SRFWQQLARARNNFTEGLGDLFLGKKAIDDELLEEVETRLIMADVGQ 135

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           A  + +++ L  +   K ++    L++ +S+L+ + L  + KP     + +PH+I+V G+
Sbjct: 136 ATTRALIDALHQQISRKQINDTEALFETLSQLMIERLERVQKP-RPAPTEQPHIIVVCGI 194

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+     +G KVMLAAGDTFR+AA++QL  W +R     +      D+A
Sbjct: 195 NGAGKTTTIGKLAHHYKQSGHKVMLAAGDTFRAAAVEQLITWGERNQIPVIGEPGRQDSA 254

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ +DVLI DTAGRLH    LM  + K+IRV+ +  P APH +L VLDA
Sbjct: 255 SVLFDAAQSARARNMDVLIADTAGRLHTQGGLMDELKKLIRVVSKSIPGAPHEILLVLDA 314

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQNAL Q   FH   G TGLI+TK+DGTA+GG L  I    K+P+ F+GVGE I DL 
Sbjct: 315 SIGQNALNQARQFHEAVGVTGLIVTKLDGTAKGGILFAIADELKLPIDFIGVGEQIADLR 374

Query: 300 PFVAKDFSAVITGCLD 315
           PF  K +   +    D
Sbjct: 375 PFDPKGYVDALLDRED 390


>gi|283470448|emb|CAQ49659.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 416

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 128/322 (39%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  EE
Sbjct: 374 QPFNPESYVNGLFADMIEQNEE 395


>gi|295675394|ref|YP_003603918.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           CCGE1002]
 gi|295435237|gb|ADG14407.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           CCGE1002]
          Length = 384

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 185/309 (59%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + A    SW+ +L  G A TS  L    T I    ++D+ + EELE  L+ SD GV   +
Sbjct: 81  QDAGAKRSWLTRLKSGLAKTSSNL----TGIFVGTKIDEDLYEELETALLMSDAGVEATE 136

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++E L  K  ++ ++  + +   +  L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 137 FLLESLREKVRSERLTDPQQVKTALRTLLVELLKPLEKSLMLGRAQ-PLVMMIAGVNGAG 195

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W  R +   V  E   D AA+ +
Sbjct: 196 KTTSIGKLAKHLQSFHQSVLLAAGDTFRAAAREQLAVWGQRNNVTVVAQE-SGDPAAVIF 254

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 255 DAVGAARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQ 314

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE ++DL+PF A
Sbjct: 315 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVDDLQPFSA 374

Query: 304 KDFSAVITG 312
           ++FS  + G
Sbjct: 375 EEFSDALLG 383


>gi|153214853|ref|ZP_01949661.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           1587]
 gi|124115096|gb|EAY33916.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           1587]
          Length = 383

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 194/308 (62%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 72  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 131

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + +P   D   + +VIL+VGVNGVG
Sbjct: 132 KIIANLTAKASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKTYVILMVGVNGVG 191

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 192 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 251

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 252 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 311

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  
Sbjct: 312 NAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFAT 371

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 372 QEFIDALF 379


>gi|317046490|ref|YP_004114138.1| signal recognition particle-docking protein FtsY [Pantoea sp.
           At-9b]
 gi|316948107|gb|ADU67582.1| signal recognition particle-docking protein FtsY [Pantoea sp.
           At-9b]
          Length = 454

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 124/316 (39%), Positives = 191/316 (60%), Gaps = 2/316 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 140 VAQEQERPTKEGFFARLKRSLVKTRANLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 199

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              ++I+  L  +   K +     LY + +  +  +L  +  P +      P VIL+VGV
Sbjct: 200 ETTRRIITNLTQQADRKQLRDAEALYGLLKTEMAGILDKVDAPLDVS-GKTPFVILMVGV 258

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A
Sbjct: 259 NGVGKTTTIGKLARQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 318

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A+A+ VDVLI DTAGRL N S LM  + K+ RV+K+LD  APH V+  +DA
Sbjct: 319 SVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDEDAPHEVMLTIDA 378

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL 
Sbjct: 379 STGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLR 438

Query: 300 PFVAKDFSAVITGCLD 315
           PF A DF   +    D
Sbjct: 439 PFKAADFIEALFARED 454


>gi|146313500|ref|YP_001178574.1| cell division protein FtsY [Enterobacter sp. 638]
 gi|145320376|gb|ABP62523.1| signal recognition particle-docking protein FtsY [Enterobacter sp.
           638]
          Length = 511

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 200 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 259

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 260 RKIIASLTEGASRKQLRDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 318

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGK++++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 319 GKTTTIGKMARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 378

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+LD  APH ++  LDA+TG
Sbjct: 379 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEDAPHEIMLTLDASTG 438

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF 
Sbjct: 439 QNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 498

Query: 303 AKDFSAVITGCLD 315
           + DF   +    D
Sbjct: 499 SDDFIEALFARED 511


>gi|167844229|ref|ZP_02469737.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei B7210]
          Length = 345

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ 
Sbjct: 48  KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 103

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 104 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 162

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 163 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 221

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 222 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 281

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 282 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 341

Query: 309 VITG 312
            + G
Sbjct: 342 ALLG 345


>gi|167630242|ref|YP_001680741.1| signal recognition particle-docking protein ftsy [Heliobacterium
           modesticaldum Ice1]
 gi|167592982|gb|ABZ84730.1| signal recognition particle-docking protein ftsy [Heliobacterium
           modesticaldum Ice1]
          Length = 304

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 131/303 (43%), Positives = 193/303 (63%), Gaps = 4/303 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  +L +G   T   L E +  +++ R ++D+ + EELE+ LI +D+G   +  +VE L
Sbjct: 4   GFFSRLKEGLTRTRQNLVEKVEALVTGRPKIDEELFEELEEALISADVGADTSLDLVERL 63

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                A+ +     + D+  E + ++L   ++P  +D  H+P V+L+VGVNGVGKTT I 
Sbjct: 64  RQTVKAQKIGDPARIKDLLQEEVARILGEQAQPVAFD--HQPTVVLIVGVNGVGKTTTIA 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV+LAAGDTFR+AAIDQL+IW  R   + +  + GSD +A+A++A + A
Sbjct: 122 KLAHRWKQEGRKVLLAAGDTFRAAAIDQLEIWGQRVGVEVIRHQEGSDPSAVAFDAVQAA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            ++ VDVLIIDTAGRLHN S LM  + K+ RVL R  P APH  L VLDATTGQNA+ Q 
Sbjct: 182 VSRGVDVLIIDTAGRLHNKSHLMNELSKINRVLDRALPGAPHETLLVLDATTGQNAVSQA 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F    G TGL++TK+DGTA+GG ++ I    + PV F+G+GE ++DL  F   +F+  
Sbjct: 242 RLFSEAVGLTGLVLTKLDGTAKGGVILAIAAEMQAPVKFIGIGEKMDDLRDFDPPEFARA 301

Query: 310 ITG 312
           + G
Sbjct: 302 LFG 304


>gi|262370504|ref|ZP_06063830.1| cell division protein [Acinetobacter johnsonii SH046]
 gi|262314846|gb|EEY95887.1| cell division protein [Acinetobacter johnsonii SH046]
          Length = 368

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 144/312 (46%), Positives = 201/312 (64%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
           S +  ASE   +  ++  G   T   L +G+ +I I  + +DD + EE+E+ L+ +DIGV
Sbjct: 53  SEETEASERGGFFSRMKVGLTKTRKNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGV 112

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VILVVGV
Sbjct: 113 DATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKTPYVILVVGV 172

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R +   V    G+D+A
Sbjct: 173 NGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNNIAVVAQGHGADSA 232

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++AF+ A+AK VDVLI DTAGRLHN   LM  + K+ RV++++D  APH V+ V+DA
Sbjct: 233 SVIFDAFESARAKGVDVLIADTAGRLHNKGHLMQELTKVKRVMQKIDATAPHEVMLVVDA 292

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ QVEMF    G TGL +TK+DGTA+GG L  I     +P+ F+GVGE I+DL 
Sbjct: 293 GTGQNAINQVEMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLR 352

Query: 300 PFVAKDFSAVIT 311
           PF AK F A + 
Sbjct: 353 PFSAKSFVAALF 364


>gi|319786795|ref|YP_004146270.1| signal recognition particle-docking protein FtsY [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465307|gb|ADV27039.1| signal recognition particle-docking protein FtsY [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 447

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 124/304 (40%), Positives = 180/304 (59%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  L+ +D+GV     +VE
Sbjct: 144 RTGWRERLRNS------AFARSFGGLFSRNPKLDDDLLDEIETALLTADVGVTATTALVE 197

Query: 69  ELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  A++ +  R L   +   +  ML P+++P   D + RP V+L VGVNGVGKTT 
Sbjct: 198 GLRKRMKAREFADARALLTALRAELIAMLQPVARPLQIDPATRPFVLLTVGVNGVGKTTT 257

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+++  D G  +MLAAGDTFR+AA+ QL+ W +R     +     +DAA++A++A +
Sbjct: 258 IGKLARRFKDEGRSLMLAAGDTFRAAAVAQLQAWGERNGVTVIAQGQNADAASVAFDALQ 317

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  +VLI DTAGRLH    LM  +GK+ RVL++LDP APH VL V+D TTGQNAL 
Sbjct: 318 AAKARGTEVLIADTAGRLHTQVGLMNELGKIKRVLQKLDPAAPHEVLMVIDGTTGQNALN 377

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  F+A  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F  + F 
Sbjct: 378 QLRQFNAAVGVTGLVVTKLDGTAKGGVVFALAREFGIPIRFAGIGERPEDLRVFDPEAFV 437

Query: 308 AVIT 311
             + 
Sbjct: 438 DALL 441


>gi|163796739|ref|ZP_02190697.1| Signal recognition particle GTPase [alpha proteobacterium BAL199]
 gi|159177993|gb|EDP62540.1| Signal recognition particle GTPase [alpha proteobacterium BAL199]
          Length = 316

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 143/314 (45%), Positives = 208/314 (66%), Gaps = 1/314 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           MS +  + E   W  +L  G A +S +L +GIT +   RRLD    EELEDLLI +D+GV
Sbjct: 1   MSAEPASPERKGWFARLRDGLAKSSRRLADGITSLFVKRRLDAATLEELEDLLITADLGV 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGV 119
             A K+   L  +++ K+V+   V    +  I  +L P++ P    + +++P V+L+VGV
Sbjct: 61  ETAAKLTANLAREKFDKEVTGDEVRAAFAADIAAILAPVAVPLEPREIANKPFVVLMVGV 120

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+++ +DAG  V+LAAGDTFR+AA++QL++W +R+    +    G+DAA
Sbjct: 121 NGSGKTTTIGKLARQWTDAGKSVVLAAGDTFRAAAVEQLRVWGERSGCPVIEKPHGADAA 180

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ALA++A  +A+ +K DVLIIDTAGRL N + LM  + K+IRVLK+ DP APH+ + VLD 
Sbjct: 181 ALAFDALVEARERKADVLIIDTAGRLQNKAGLMEELAKVIRVLKKQDPEAPHATVLVLDG 240

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           T GQNA  QV+ F  +   TGLI+TK+DG+ARGG ++ +  +  +PV+ +GVGEGI+DL 
Sbjct: 241 TVGQNAHAQVKTFREMVNVTGLIVTKLDGSARGGIVVALAQSQGLPVHAVGVGEGIDDLH 300

Query: 300 PFVAKDFSAVITGC 313
           PF    F+  + G 
Sbjct: 301 PFEPDAFARSLMGI 314


>gi|297539226|ref|YP_003674995.1| signal recognition particle-docking protein FtsY [Methylotenera sp.
           301]
 gi|297258573|gb|ADI30418.1| signal recognition particle-docking protein FtsY [Methylotenera sp.
           301]
          Length = 333

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 184/308 (59%), Gaps = 3/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + SW  +L +  + T  +L   +  +    ++D  V EELE +LI SD+GV   +
Sbjct: 27  EAQVAAQSWSERLKQSLSKTRKQLGNQLASLFGGGKIDAEVYEELETILITSDVGVNATK 86

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++ ++  +   + +     L   + E +  +L PL KP +     +P VI++ GVNG G
Sbjct: 87  NLLADIKNRVKVQSLDDTVQLKAALKEAMSDLLTPLQKPLDTS-GQKPFVIMLAGVNGAG 145

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+      G  V++AAGDTFR+AA +QL+IW +R +   V S+   DAAA+ +
Sbjct: 146 KTTSIGKLAHAFQAEGKSVLIAAGDTFRAAAREQLQIWGERNNVHVV-SQTSGDAAAVMF 204

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+AK +D+++ DTAGRL     LM  I K+ RV+ +  P APH VL VLDA TGQ
Sbjct: 205 DAINSAKAKNIDIVLADTAGRLPTQMHLMDEIAKVKRVMDKALPGAPHEVLLVLDANTGQ 264

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ QV+ F    G TGL+++K+DGTA+GG +  I     IP+ ++G+GEGI+DL PF+A
Sbjct: 265 NAVTQVKTFDDALGVTGLVLSKLDGTAKGGVIAAIAEARPIPIRYIGIGEGIDDLRPFIA 324

Query: 304 KDFSAVIT 311
            DF   + 
Sbjct: 325 ADFIDAMI 332


>gi|85706875|ref|ZP_01037966.1| signal recognition particle-docking protein FtsY [Roseovarius sp.
           217]
 gi|85668668|gb|EAQ23538.1| signal recognition particle-docking protein FtsY [Roseovarius sp.
           217]
          Length = 397

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 132/307 (42%), Positives = 201/307 (65%), Gaps = 11/307 (3%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A+    ++ ++          L  G  ++   R LDD + E LE+LLI +D+GV  A ++
Sbjct: 99  AAPRAGFLGRI----------LGRGAGEVAPRRVLDDAMLESLEELLIGADMGVDTALRV 148

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
              +   R  K +S Q +   +++ I +++ P+++P    ++ RP V+LVVGVNG GKTT
Sbjct: 149 TANMAEGRMGKRLSTQEIKELLAQEIARIMDPVARPMPI-YAKRPQVVLVVGVNGSGKTT 207

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ +   AG  V++AAGDTFR+AA++QL++W +R     + +  GSD A+LAY+A 
Sbjct: 208 TIGKLAAQFKSAGKSVVIAAGDTFRAAAVEQLQVWGERAGVPVMTAPEGSDPASLAYDAM 267

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+A+  D+L+IDTAGRL N + LM  + K++RV+++ DP APH+ L VLDATTGQNAL
Sbjct: 268 TRAEAEGADLLMIDTAGRLQNRADLMEELAKIVRVIRKKDPSAPHNTLLVLDATTGQNAL 327

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QV  F  +A  +GLIMTK+DGTARGG L+ +     +P++ +GVGE I+DL PF  ++F
Sbjct: 328 SQVATFQKLADVSGLIMTKLDGTARGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPQEF 387

Query: 307 SAVITGC 313
           +A +TG 
Sbjct: 388 AAALTGL 394


>gi|261401832|ref|ZP_05987957.1| signal recognition particle-docking protein FtsY [Neisseria
           lactamica ATCC 23970]
 gi|269208010|gb|EEZ74465.1| signal recognition particle-docking protein FtsY [Neisseria
           lactamica ATCC 23970]
          Length = 409

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 118/306 (38%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI  D+G+   + +
Sbjct: 104 EEHKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEATEYL 163

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 164 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 223

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 224 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 282

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 283 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 342

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     IPV ++GVGEGI+DL PF A+ 
Sbjct: 343 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPIPVRYIGVGEGIDDLRPFDARA 402

Query: 306 FSAVIT 311
           F   + 
Sbjct: 403 FIDALL 408


>gi|197103597|ref|YP_002128974.1| signal recognition particle-docking protein FtsY [Phenylobacterium
           zucineum HLK1]
 gi|196477017|gb|ACG76545.1| signal recognition particle-docking protein FtsY [Phenylobacterium
           zucineum HLK1]
          Length = 314

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 130/309 (42%), Positives = 200/309 (64%), Gaps = 1/309 (0%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQ 64
           ++     W ++LT+G   +S ++ + I  + +++  LD    +ELE++LI +D+G   A 
Sbjct: 1   MSEPKRGWFQRLTQGLTKSSKQMGDQIASVFTAKEPLDQAKLDELEEMLIEADLGPHSAA 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +I      +++ KDV  + +   +++ I   L      F+     RP+V+L +GVNG GK
Sbjct: 61  RITARFAEEKFGKDVGEEEIKEALAQAIGDELSSRQGGFDPLSGPRPYVVLFIGVNGSGK 120

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT +GK++  +   G KV++ AGDTFR+AA++QLK+WA+R  ADF+    GSDAA LA++
Sbjct: 121 TTTLGKIAADLRSRGAKVLIVAGDTFRAAAVEQLKVWAERAGADFMGRPTGSDAAGLAFD 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A ++A+A+  DV++IDTAGRL N   LM  + K+IRV+K+LDP APH  L VLDAT G+N
Sbjct: 181 AVQRAKAEGYDVVLIDTAGRLQNKQGLMDELLKIIRVVKKLDPEAPHETLLVLDATVGRN 240

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q  +F    G +G++MTK+DGTARGG L+P+      P+  +GVGEGI+DL+PF A+
Sbjct: 241 ALNQENIFGNQIGVSGIVMTKLDGTARGGVLVPVAQASDSPIKLIGVGEGIDDLQPFDAR 300

Query: 305 DFSAVITGC 313
            F+  + G 
Sbjct: 301 AFARSLVGL 309


>gi|322834886|ref|YP_004214913.1| signal recognition particle-docking protein FtsY [Rahnella sp.
           Y9602]
 gi|321170087|gb|ADW75786.1| signal recognition particle-docking protein FtsY [Rahnella sp.
           Y9602]
          Length = 493

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 124/314 (39%), Positives = 191/314 (60%), Gaps = 2/314 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV  
Sbjct: 181 TEQERPTKEGFFARLKRSLVKTKQNLGSGFVGLFRGKKIDDDLFEELEEQLLIADVGVET 240

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            +KI+  L      K +     LY  + E + ++L  + +P +      P+VIL+VGVNG
Sbjct: 241 TRKIITSLTEHASRKQLKDADALYGKLKEEMSEILAKVDEPLDVS-GKTPYVILMVGVNG 299

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGK++++    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++
Sbjct: 300 VGKTTTIGKMARQFEAQGKSVMLAAGDTFRAAAVEQLQVWGQRNKIPVIAQHTGADSASV 359

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+ +DVLI DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+T
Sbjct: 360 IFDAIQAAKARNIDVLIADTAGRLQNKTHLMEELKKIVRVMKKLDEDAPHEVMLTLDAST 419

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF
Sbjct: 420 GQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPF 479

Query: 302 VAKDFSAVITGCLD 315
            A DF   +    D
Sbjct: 480 KADDFIEALFARED 493


>gi|126654293|ref|ZP_01726070.1| recognition particle-docking protein [Bacillus sp. B14905]
 gi|126589257|gb|EAZ83418.1| recognition particle-docking protein [Bacillus sp. B14905]
          Length = 424

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 123/318 (38%), Positives = 185/318 (58%), Gaps = 5/318 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
             ++    + S  +K   G   T       + D+++  R++D+   EELEDLL+++D+G 
Sbjct: 97  PTEEKKPSAWSITQKFKAGLEKTRNSFTSKVNDLVARYRKVDEDFFEELEDLLLQADVGF 156

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSK---PFNWDFSHRPHVILV 116
               +++++L  +   K++     +  + SE + ++           N        VIL 
Sbjct: 157 ETVMELMDKLRFEVQRKNIKDTNGIQTLISEKLVEIYEQGEDDLIELNMQPDGELTVILF 216

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL++++   G  V+LAAGDTFR+ AIDQL++W DR   + +    GS
Sbjct: 217 VGVNGVGKTTTIGKLARRLKSQGKTVVLAAGDTFRAGAIDQLQVWGDRVGCEVIKQSEGS 276

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A + A+ +K DVLI DTAGRL N   LM  + K+ RV+ R  P APH VL  
Sbjct: 277 DPAAVMYDAIRAAKNRKADVLICDTAGRLQNKVNLMNELEKVHRVISREIPSAPHEVLLA 336

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++
Sbjct: 337 LDATTGQNALVQAQTFKEATNVTGIVLTKLDGTAKGGIVLAIRNKLHIPVKFVGLGEKMD 396

Query: 297 DLEPFVAKDFSAVITGCL 314
           DL+PF A+ +   +    
Sbjct: 397 DLQPFDAERYVYGLFADG 414


>gi|83643465|ref|YP_431900.1| signal recognition particle-docking protein FtsY [Hahella
           chejuensis KCTC 2396]
 gi|83631508|gb|ABC27475.1| signal recognition particle-docking protein FtsY [Hahella
           chejuensis KCTC 2396]
          Length = 376

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 126/302 (41%), Positives = 192/302 (63%), Gaps = 3/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            W+ ++  G + T  +  + +  +   S+ +D+ + EE+E LL+ +D+G+    +I + +
Sbjct: 74  GWLTRVRSGLSKTRGQFSQNLMALFAGSKAIDEELLEEIETLLLSADVGIEATTQITQAI 133

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K     +     LYD + E +  +L P   P   + +  P+VILVVGVNGVGKTT IG
Sbjct: 134 TEKLDRNQLKDSSALYDALKEELRGLLEPCCSPLQIE-NKTPYVILVVGVNGVGKTTTIG 192

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K    G  V+LAAGDTFR+AA++QL++W +R +   +    G+D+A++ ++A + A
Sbjct: 193 KLANKFQQEGRSVVLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIFDAVQAA 252

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +++ VDV+I DTAGRL N   LMA + K++RV+K+ DP APH VL VLDA TGQNAL Q 
Sbjct: 253 KSRGVDVVIADTAGRLQNKENLMAELEKVVRVIKKHDPDAPHEVLLVLDAGTGQNALSQA 312

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F    G TG+ +TK+DGTA+GG L  I   H +P+ ++GVGEGI+DL PF A +F   
Sbjct: 313 QLFRQAVGVTGIAITKLDGTAKGGILFAIAKQHGLPIRYIGVGEGIDDLRPFDASEFVDA 372

Query: 310 IT 311
           + 
Sbjct: 373 LF 374


>gi|312884400|ref|ZP_07744105.1| cell division protein FtxY [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367922|gb|EFP95469.1| cell division protein FtxY [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 397

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 125/312 (40%), Positives = 198/312 (63%), Gaps = 1/312 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  A T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 86  EQEKPTESFFARLKRSLAKTKTNIGAGFFGLFKGKQIDDDLFEELEEQLLIADVGMDTTM 145

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   +D+     LY  + + + +ML  + +P   +   +P VIL+VGVNGVG
Sbjct: 146 KIIGSLTEKASRRDLKDGEALYGLLKDEMTEMLSTVEQPLVVNNEAKPFVILMVGVNGVG 205

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 206 KTTTIGKLAKQFQAEGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 265

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+AK VDV+I DTAGRL N + LM  + K++RV++++D  APH ++  LDA TGQ
Sbjct: 266 DAIESAKAKGVDVVIADTAGRLQNKANLMEELKKIVRVMQKVDSTAPHEIMLTLDAGTGQ 325

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PF +
Sbjct: 326 NAISQAKLFSEVAPLTGIALTKLDGTAKGGVIFSLADQFQIPIRYIGVGEGIDDLRPFES 385

Query: 304 KDFSAVITGCLD 315
           ++F   +    D
Sbjct: 386 QEFIEALFSRDD 397


>gi|221199977|ref|ZP_03573020.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans CGD2M]
 gi|221206868|ref|ZP_03579880.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans CGD2]
 gi|221173523|gb|EEE05958.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans CGD2]
 gi|221180216|gb|EEE12620.1| signal recognition particle-docking protein FtsY [Burkholderia
           multivorans CGD2M]
          Length = 382

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 186/309 (60%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++DD + EELE  L+ SD GV   +
Sbjct: 80  QDASAKKSWLARLKTGLAKT----GSSITGVFVNTKIDDALYEELETALLMSDAGVDATE 135

Query: 65  KIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++  L  K R  +    Q+V   + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 136 YLLGALREKVRVGRLTDPQQVKSALRDLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAG 194

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 195 KTTSIGKLAKHLQSFEQSVLLAAGDTFRAAAREQLTVWGERNNVTVV-QQESGDPAAVIF 253

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 254 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQ 313

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 314 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSA 373

Query: 304 KDFSAVITG 312
           ++F+  + G
Sbjct: 374 EEFADALLG 382


>gi|296161521|ref|ZP_06844326.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           Ch1-1]
 gi|295888165|gb|EFG67978.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           Ch1-1]
          Length = 385

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 130/304 (42%), Positives = 183/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SW+ +L  G + TS  L    T I    ++D+ + EELE  L+ SD GV   + ++E 
Sbjct: 87  KRSWLTRLKTGLSKTSSSL----TGIFVGAKIDEDLYEELETALLMSDAGVDATEYLLEA 142

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A+ ++  + +   +  L+  +L PL K      +  P V+++ GVNG GKTT I
Sbjct: 143 LREKVRAERLTDPQQVKAALRTLLVDLLRPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSI 201

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW  R +   V S+   D AA+ ++A   
Sbjct: 202 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVV-SQESGDPAAVIFDAVGA 260

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 261 ARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQEGAPHEVLLVIDANTGQNALAQ 320

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++FS 
Sbjct: 321 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSD 380

Query: 309 VITG 312
            + G
Sbjct: 381 ALLG 384


>gi|33152121|ref|NP_873474.1| cell division protein FtsY [Haemophilus ducreyi 35000HP]
 gi|33148343|gb|AAP95863.1| cell division protein FtsY [Haemophilus ducreyi 35000HP]
          Length = 519

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 125/312 (40%), Positives = 193/312 (61%), Gaps = 1/312 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           + N    +    +  +L KG   T   +          +++DD + EELE+ L+ +D+G+
Sbjct: 204 VDNHSEKTSENGFFSRLLKGLIKTKQNIGSNFRQFFRGKKIDDELFEELEERLLMADLGM 263

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               KI++ L T    K +    +LY  +   +  +L P+ KP   D   +P+VIL+VGV
Sbjct: 264 PTTTKIIQNLTTHATKKQLKDADLLYQQLKIELANVLKPIDKPLEIDPLTKPYVILMVGV 323

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+KK  D G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A
Sbjct: 324 NGVGKTTTIGKLAKKFQDEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQTTGADSA 383

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A + A +K +D+LI DTAGRL N + LM  + K++RV+K+ +  APH ++  LDA
Sbjct: 384 SVIFDAMQSAASKGIDILIADTAGRLQNKNHLMDELKKIVRVMKKYNESAPHEIMLTLDA 443

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL 
Sbjct: 444 GTGQNAISQAKLFNEATGLTGITLTKLDGTAKGGVIFAIADQFNLPIRFIGVGEKIDDLR 503

Query: 300 PFVAKDFSAVIT 311
           PF A++F   + 
Sbjct: 504 PFNAEEFIDALF 515


>gi|258405800|ref|YP_003198542.1| signal recognition particle-docking protein FtsY [Desulfohalobium
           retbaense DSM 5692]
 gi|257798027|gb|ACV68964.1| signal recognition particle-docking protein FtsY [Desulfohalobium
           retbaense DSM 5692]
          Length = 444

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 179/313 (57%), Gaps = 5/313 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIG 59
           +  +    E      KL+ G   T  +L + +  ++  +++ DD   E+LE++LI SD+G
Sbjct: 133 LDLEDEEDERSRLFIKLSSGLTKTKEQLSKQVDQLLQLNKQFDDAFWEDLEEILIMSDVG 192

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
                 ++E L  +   +  +       +  E +  +    +K         P V+L++G
Sbjct: 193 FKATTTLLERLRDRVRQEGCNDSETFKTLFKEELAALFPQPAKRIK---PQPPEVVLMIG 249

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT I KL+ +    G KVM+AAGDTFR+AAI+QL+IW+ R  A F      SD 
Sbjct: 250 VNGVGKTTTIAKLAHRAHMQGQKVMVAAGDTFRAAAIEQLEIWSKRVGAGFYAKAPFSDP 309

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++AYEA   AQA+  D L +DTAGRLH N  LM  + K+ RVL +  P APH  + VLD
Sbjct: 310 ASVAYEALDTAQAEGYDTLFVDTAGRLHTNVDLMEELRKIKRVLAKKHPGAPHRTILVLD 369

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q ++F        +++TK+DGTA+GG ++ + + + IP+ F+G+GE + DL
Sbjct: 370 ATTGQNALSQTKLFAKDMDIDEIVLTKLDGTAKGGVVVAVSLEYGIPITFIGLGEKMEDL 429

Query: 299 EPFVAKDFSAVIT 311
            PF   DF+  + 
Sbjct: 430 RPFSGTDFAQALL 442


>gi|226313205|ref|YP_002773099.1| signal recognition particle protein fifty-four homolog
           [Brevibacillus brevis NBRC 100599]
 gi|226096153|dbj|BAH44595.1| signal recognition particle protein fifty-four homolog
           [Brevibacillus brevis NBRC 100599]
          Length = 470

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+     +    ++D+        E+   L+ +D+   V +  V  +  +  
Sbjct: 2   AFESLANRLQNAFDKLRGRGKIDETIVNEAMREVRLALLEADVNFKVVKDFVARVKERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V+E +  ++              P VI++ G+ G GKTT  GK
Sbjct: 62  GQEVMKSLTPGQMVIKIVNEELVALMGGNVAQLTM-AHRPPTVIMMAGLQGAGKTTTTGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +     K +L AGD +R AAI QL++  ++ +              +A +A + A+
Sbjct: 121 LAKYLQKQNRKPLLVAGDIYRPAAIKQLQVLGEQLNVPVFTLGDQVSPVEIARQAIEHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              +DV++IDTAGRLH +  LM  + ++  V K      P  +L V+DA TGQ+A+   E
Sbjct: 181 TNHLDVVLIDTAGRLHIDEALMDELKQIREVTK------PDEILLVVDAMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F++    TG+++TK+DG  RGG  + +      P+ F  +GE ++ LEPF     ++ I
Sbjct: 235 SFNSQLELTGVVLTKLDGDTRGGAALSVKAVTGKPIKFAAMGEKLDALEPFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|21282847|ref|NP_645935.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486074|ref|YP_043295.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208121|ref|ZP_06924552.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300912201|ref|ZP_07129644.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|21204286|dbj|BAB94983.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244517|emb|CAG42946.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887364|gb|EFH26266.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300886447|gb|EFK81649.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 416

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 128/322 (39%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  EE
Sbjct: 374 QPFNPESYVYGLFADMIEQNEE 395


>gi|158521729|ref|YP_001529599.1| signal recognition particle-docking protein FtsY [Desulfococcus
           oleovorans Hxd3]
 gi|158510555|gb|ABW67522.1| signal recognition particle-docking protein FtsY [Desulfococcus
           oleovorans Hxd3]
          Length = 381

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 126/308 (40%), Positives = 183/308 (59%), Gaps = 5/308 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +     +  +L +G   T   L   +  +    ++LDD   E+LE+LLI +DIGV    +
Sbjct: 76  SEPKSGFYGRLRRGLEKTRRFLTTDVDKLFVPGKKLDDQTLEDLEELLITADIGVKATTE 135

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH--RPHVILVVGVNGVG 123
           ++  L  +     ++    L +  + +    +   +P +        PHVI+V+GVNGVG
Sbjct: 136 LIAGLSKQAAG--ITDPDHLKEAIKEMILPYLEDDRPTDEATRPLATPHVIMVIGVNGVG 193

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ +    G KVML A DTFR+AAI+QL IWADRT AD +     SD AA+AY
Sbjct: 194 KTTTIGKLAARHRANGKKVMLVAADTFRAAAIEQLSIWADRTGADILKHRENSDPAAVAY 253

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  + A+A+ VDV+I+DTAGRLH    LM  + K+ R + +  P APH VL VLDATTGQ
Sbjct: 254 DGVEAARARGVDVVIVDTAGRLHTKVNLMEELKKIKRSMSKTMPDAPHEVLLVLDATTGQ 313

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q E+F   A  TG+++TK+DGTA+GG  I +  +  IP+ ++GVGE + DL+PF  
Sbjct: 314 NAISQTELFTKAADVTGIVLTKLDGTAKGGIAINLRHSFGIPIQYIGVGEQVEDLQPFDP 373

Query: 304 KDFSAVIT 311
           + F   + 
Sbjct: 374 RAFLDAMF 381


>gi|186475077|ref|YP_001856547.1| signal recognition particle-docking protein FtsY [Burkholderia
           phymatum STM815]
 gi|184191536|gb|ACC69501.1| signal recognition particle-docking protein FtsY [Burkholderia
           phymatum STM815]
          Length = 392

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 130/307 (42%), Positives = 185/307 (60%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A+   SW+ +L  G + TS      IT I    R+D+ + EELE  L+ SD GV   + +
Sbjct: 92  AAARRSWLTRLRSGLSKTS----SSITGIFVGTRIDEDLYEELETALLMSDAGVDATEYL 147

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E L  K  ++ ++  + +   +  L+  +L PL K       H P V+++ GVNG GKT
Sbjct: 148 LETLREKVRSERLTDPQQVKSALRTLLVDLLKPLEKSLTLGHYH-PTVMMIAGVNGAGKT 206

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K M      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A
Sbjct: 207 TSIGKLAKHMQRFNQSVLLAAGDTFRAAAREQLAIWGERNNVMVV-QQESGDPAAVIFDA 265

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K++V++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 266 VGAARARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAMAGAPHEVLLVIDANTGQNA 325

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++
Sbjct: 326 LAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEE 385

Query: 306 FSAVITG 312
           FS  + G
Sbjct: 386 FSDALLG 392


>gi|73662843|ref|YP_301624.1| signal recognition particle GTPase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495358|dbj|BAE18679.1| signal recognition particle GTPase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 406

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 127/322 (39%), Positives = 192/322 (59%), Gaps = 8/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ L    K   G   +    +  + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 67  EEIEAQQLG--AKFRAGLEKSRENFQAQLNNLIARYRKVDEEFFEALEEMLITADVGFNT 124

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNW--DFSHRPHVILVVGV 119
             ++VEEL  +   +++S    L +V  E I ++     +        +   +VIL+VGV
Sbjct: 125 VMQLVEELREEAQKRNISETEDLREVIVEKIVEIYHQDDEHSEVMNIENEGLNVILMVGV 184

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI QLK+W +R   D +    GSD A
Sbjct: 185 NGVGKTTTIGKLAHRYQAEGKKVMLAAGDTFRAGAIQQLKVWGERVGVDVMSQNEGSDPA 244

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A   A++K +D+LI DTAGRL N S LM  + K+ RV+ R  P APH VL  LDA
Sbjct: 245 AVMYDAINAAKSKGIDILICDTAGRLQNKSNLMNELEKVKRVISRAVPEAPHEVLLCLDA 304

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q + F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL+
Sbjct: 305 TTGQNALSQAKSFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQ 364

Query: 300 PFVAKDFSAVITGCLDYGEEKI 321
           PF  + +   +    D  E+ +
Sbjct: 365 PFNPESYVYGLFA--DMIEQNV 384


>gi|73540040|ref|YP_294560.1| signal recognition particle-docking protein FtsY [Ralstonia
           eutropha JMP134]
 gi|72117453|gb|AAZ59716.1| signal recognition particle-docking protein FtsY [Ralstonia
           eutropha JMP134]
          Length = 382

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 122/313 (38%), Positives = 182/313 (58%), Gaps = 7/313 (2%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++  + A     W+++L  G + TS      I+ +    ++D+ + EELE  L+ +D GV
Sbjct: 76  LAAAQTAEARRGWMQRLRTGLSKTSRN----ISTLFVGMKVDEALFEELETALLMADAGV 131

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + ++ EL  +  +  +     +   + +L+ ++L PL K         P V+++ GV
Sbjct: 132 EATEYLLGELRKRVRSDRIESAEGVKAALRDLLIQLLRPLEKTMELGREQ-PLVMMIAGV 190

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL K     G  V+LAAGDTFR+AA +QL IW +R +   V  E   D A
Sbjct: 191 NGAGKTTSIGKLCKHFQHYGQSVLLAAGDTFRAAAREQLTIWGERNNVTVVAQE-SGDPA 249

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+A+ +D+++ DTAGRL     LM  + K+ RV+ +  P APH VL V+DA
Sbjct: 250 AVIFDAVNAARARGIDIVMADTAGRLPTQLHLMEELKKVKRVISKAMPTAPHEVLLVIDA 309

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNAL Q   F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+
Sbjct: 310 NTGQNALAQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQ 369

Query: 300 PFVAKDFSAVITG 312
           PF A++F+  + G
Sbjct: 370 PFKAEEFADALLG 382


>gi|325577122|ref|ZP_08147606.1| cell division protein FtsY [Haemophilus parainfluenzae ATCC 33392]
 gi|325160704|gb|EGC72825.1| cell division protein FtsY [Haemophilus parainfluenzae ATCC 33392]
          Length = 485

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 126/310 (40%), Positives = 195/310 (62%), Gaps = 2/310 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            Q+  SE   +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV  
Sbjct: 171 TQEKPSEG-GFFSRLVKGLLKTKQNIGAGFRAFFLGKKIDDDLFEELEEQLLIADIGVPT 229

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             KI++ L      K +    +LY  +   + ++L P++KP   D + +P+VIL+VGVNG
Sbjct: 230 TNKIIKNLTEHASRKQLQDAELLYQQLKVEMVEILKPVAKPLVIDTTKKPYVILMVGVNG 289

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL++K  + G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++
Sbjct: 290 VGKTTTIGKLARKFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASV 349

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A A+ +D+LI DTAGRL N + LM  + K++RV+++ D  APH ++  LDA T
Sbjct: 350 IFDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRVMRKYDETAPHEIMLTLDAGT 409

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL  F
Sbjct: 410 GQNAISQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREF 469

Query: 302 VAKDFSAVIT 311
            A++F   + 
Sbjct: 470 NAEEFIEALF 479


>gi|325145480|gb|EGC67754.1| signal recognition particle-docking protein FtsY [Neisseria
           meningitidis M01-240013]
          Length = 421

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + + ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAHGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|89076091|ref|ZP_01162451.1| putative cell division protein FtsY [Photobacterium sp. SKA34]
 gi|89048243|gb|EAR53825.1| putative cell division protein FtsY [Photobacterium sp. SKA34]
          Length = 346

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 124/309 (40%), Positives = 197/309 (63%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++   +S  +  +L +G   T      G   +   +++DD + EELE+ L+ +D+G+   
Sbjct: 34  EQEKPKSEGFFARLMRGLKKTKTNFGAGFFGLFRGKKIDDELFEELEEQLLIADVGMDTT 93

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+E L  K   K++     LY  + + +  ML  + +P   D S +P+VIL+VGVNGV
Sbjct: 94  LKIIENLTDKASKKELKDGEALYGLLKDELAGMLAKVEQPLVIDTSKKPYVILMVGVNGV 153

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ 
Sbjct: 154 GKTTTIGKLAKQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVI 213

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+AK +DV+I DTAGRL N   LM  + K++RV+K++D  APH ++  +DA TG
Sbjct: 214 FDAIESAKAKNIDVVIADTAGRLQNKGNLMEELRKIVRVMKKVDVDAPHEIMLTVDAGTG 273

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  +G+ +TK+DGTA+GG +  +     IP+ ++G+GEGI+DL PF 
Sbjct: 274 QNAISQAKLFSDVAPVSGITITKLDGTAKGGVIFAVADQFNIPIRYIGIGEGIDDLRPFA 333

Query: 303 AKDFSAVIT 311
           A++F   + 
Sbjct: 334 AEEFIEALF 342


>gi|329733588|gb|EGG69916.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 416

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 128/322 (39%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  EE
Sbjct: 374 QPFNPESYVYGLFADMIEQNEE 395


>gi|57651804|ref|YP_186110.1| cell division protein FtsY, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161637|ref|YP_493825.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88194942|ref|YP_499742.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|151221357|ref|YP_001332179.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|161509407|ref|YP_001575066.1| type I general secretory pathway protein signal recognition
           particle protein FtsY [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142025|ref|ZP_03566518.1| type I general secretory pathway protein signal recognition
           particle protein FtsY [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258452533|ref|ZP_05700539.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A5948]
 gi|262051864|ref|ZP_06024080.1| signal recognition particle [Staphylococcus aureus 930918-3]
 gi|282920018|ref|ZP_06327747.1| signal recognition particle receptor [Staphylococcus aureus A9765]
 gi|284024159|ref|ZP_06378557.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus 132]
 gi|294848229|ref|ZP_06788976.1| signal recognition particle receptor [Staphylococcus aureus A9754]
 gi|304381201|ref|ZP_07363854.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|57285990|gb|AAW38084.1| cell division protein FtsY, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127611|gb|ABD22125.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202500|gb|ABD30310.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|150374157|dbj|BAF67417.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|160368216|gb|ABX29187.1| Sec family Type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257859751|gb|EEV82593.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A5948]
 gi|259160265|gb|EEW45293.1| signal recognition particle [Staphylococcus aureus 930918-3]
 gi|282594734|gb|EFB99718.1| signal recognition particle receptor [Staphylococcus aureus A9765]
 gi|294825029|gb|EFG41451.1| signal recognition particle receptor [Staphylococcus aureus A9754]
 gi|302751058|gb|ADL65235.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340184|gb|EFM06125.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315198474|gb|EFU28803.1| Sec family Type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140949|gb|EFW32796.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320144336|gb|EFW36102.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329313904|gb|AEB88317.1| Signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329724745|gb|EGG61250.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 416

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 128/322 (39%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  EE
Sbjct: 374 QPFNPESYVYGLFADMIEQNEE 395


>gi|294667547|ref|ZP_06732762.1| cell division protein FtsY [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602667|gb|EFF46103.1| cell division protein FtsY [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 497

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  LI +D+G+     +++
Sbjct: 194 KPGWRERLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALID 247

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  +++ V  Q +   +   +  +L P+SKP   D S +P V+L VGVNGVGKTT 
Sbjct: 248 GLRKRMKSREFVDAQAMFKALRADLIALLQPVSKPLVIDRSLKPFVVLTVGVNGVGKTTT 307

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W DR     +     +DAA++A++A +
Sbjct: 308 IGKLAKRFKDEGNSLMLAAGDTFRAAAVAQLQAWGDRNGVAVIAQGQNADAASVAFDALQ 367

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DVLI DTAGRLH  + LM  +GK+ RVL ++D  APH VL V+D TTGQNA+ 
Sbjct: 368 AAKARGTDVLIADTAGRLHTQTGLMNELGKIRRVLGKIDAAAPHEVLMVIDGTTGQNAIS 427

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F    F 
Sbjct: 428 QLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFNIPIRFAGIGERPEDLRVFDPVAFV 487

Query: 308 AVIT 311
             + 
Sbjct: 488 DALL 491


>gi|167901234|ref|ZP_02488439.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei NCTC 13177]
          Length = 339

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 185/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ 
Sbjct: 42  KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 97

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 98  LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 156

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 157 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 215

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 216 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 275

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 276 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 335

Query: 309 VITG 312
            + G
Sbjct: 336 ALLG 339


>gi|299536776|ref|ZP_07050084.1| cell division protein ftsY-like protein [Lysinibacillus fusiformis
           ZC1]
 gi|298727788|gb|EFI68355.1| cell division protein ftsY-like protein [Lysinibacillus fusiformis
           ZC1]
          Length = 423

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 123/316 (38%), Positives = 185/316 (58%), Gaps = 5/316 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           ++    + S  +K   G   T       + D+++  R++D+   EELEDLL+++D+G   
Sbjct: 98  EEKKPSAWSITQKFKAGLEKTRNSFTSKVNDLVARYRKVDEDFFEELEDLLLQADVGFET 157

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSK---PFNWDFSHRPHVILVVG 118
             +++++L  +   K++     +  V SE + ++     +              VIL VG
Sbjct: 158 VMELMDKLRYEVQRKNIKDTNGIQAVISEKLVEIYEQGEEDIIELTMQPDGELTVILFVG 217

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ ++   G  V+LAAGDTFR+ AIDQL++W DR   + +    GSD 
Sbjct: 218 VNGVGKTTTIGKLAHRLKSQGKTVVLAAGDTFRAGAIDQLQVWGDRVGCEVIKQSEGSDP 277

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+ +K DVLI DTAGRL N   LM  + K+ RV+ R  P+APH VL  LD
Sbjct: 278 AAVMYDAIRAAKNRKADVLICDTAGRLQNKVNLMNELEKVHRVISREIPNAPHEVLLALD 337

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL
Sbjct: 338 ATTGQNALVQAQTFKEATNVTGIVLTKLDGTAKGGIVLAIRNKLHIPVKFVGLGEKMDDL 397

Query: 299 EPFVAKDFSAVITGCL 314
           +PF A+ +   +    
Sbjct: 398 QPFDAERYVYGLFADG 413


>gi|325915143|ref|ZP_08177469.1| signal recognition particle-docking protein FtsY [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325538665|gb|EGD10335.1| signal recognition particle-docking protein FtsY [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 547

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  LI +D+G+     ++E
Sbjct: 244 KPGWRERLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALIE 297

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  +++ V  Q +   +   +  +L P+SKP   D S +P V+L VGVNGVGKTT 
Sbjct: 298 GLRKRMKSREFVDAQAMFKALRADLIALLQPVSKPLVIDRSVKPFVVLTVGVNGVGKTTT 357

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W DR     +     +DAA++A++A +
Sbjct: 358 IGKLAKRFKDDGNSLMLAAGDTFRAAAVAQLQAWGDRNGVAVIAQGQNADAASVAFDALQ 417

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  D+LI DTAGRLH  + LM  +GK+ RVL ++D  APH VL V+D TTGQNA+ 
Sbjct: 418 AAKARGTDILIADTAGRLHTQTGLMNELGKIRRVLGKIDAAAPHEVLMVIDGTTGQNAIS 477

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F    F 
Sbjct: 478 QLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFNIPIRFAGIGERPEDLRVFDPVAFV 537

Query: 308 AVIT 311
             + 
Sbjct: 538 DALL 541


>gi|253731853|ref|ZP_04866018.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253733527|ref|ZP_04867692.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|253724405|gb|EES93134.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253728581|gb|EES97310.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Staphylococcus aureus
           subsp. aureus TCH130]
          Length = 416

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 128/322 (39%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  EE
Sbjct: 374 QPFNPESYVYGLFADMIEQNEE 395


>gi|78067608|ref|YP_370377.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           383]
 gi|77968353|gb|ABB09733.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           383]
          Length = 388

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 185/309 (59%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   +
Sbjct: 86  QDASAKKSWLARLKTGLAKT----GSSITGVFVNTKIDEDLYEELETALLMSDAGVDATE 141

Query: 65  KIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++  L  K R  +    Q+V   + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 142 YLLGALREKVRTGRLTDPQQVKSALHDLLVELLTPLEKSLMLGRAQ-PLVMMITGVNGAG 200

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 201 KTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV-QQESGDPAAVIF 259

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 260 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQ 319

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 320 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSA 379

Query: 304 KDFSAVITG 312
            +F+  + G
Sbjct: 380 VEFADALLG 388


>gi|217975238|ref|YP_002359989.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS223]
 gi|217500373|gb|ACK48566.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS223]
          Length = 615

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 192/303 (63%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ 
Sbjct: 306 KEGLFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKN 365

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   K +     LYD+  E + K L P++ P   D ++ P VIL+VGVNGVGKTT I
Sbjct: 366 LTEQASRKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTI 425

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + 
Sbjct: 426 GKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQA 485

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+KVDVLI DTAGRL N + LM  + K++RV+K+LDP  PH V+  LDA+TGQNA+ Q
Sbjct: 486 AKARKVDVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPDTPHEVMLTLDASTGQNAISQ 545

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+ ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F  
Sbjct: 546 AQLFQEAVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEFID 605

Query: 309 VIT 311
            + 
Sbjct: 606 ALF 608


>gi|289207356|ref|YP_003459422.1| signal recognition particle-docking protein FtsY [Thioalkalivibrio
           sp. K90mix]
 gi|288942987|gb|ADC70686.1| signal recognition particle-docking protein FtsY [Thioalkalivibrio
           sp. K90mix]
          Length = 347

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 126/312 (40%), Positives = 188/312 (60%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
                      W ++L +G A T   L   +  +   R++DD + EELE+ L+ +D+G+ 
Sbjct: 33  PEPDAQPARGGWFQRLRQGLAKTGQALGGDLKSLF-RRKIDDELFEELEERLLLADVGLD 91

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             Q+I++ +  +   +++     L D  E  + ++L P+S+P +   + RP  ILVVG+N
Sbjct: 92  ATQRIMDRITREVKRRELDNADALMDALETAMVEILEPVSRPLDIPQAERPFSILVVGIN 151

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ +  D G  V+LAAGDTFR+AA++QL+ W +R     +    G+D+A+
Sbjct: 152 GAGKTTTIGKLAHRFKDEGRSVLLAAGDTFRAAAVEQLQTWGERNGVPVIAQGTGADSAS 211

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+  + AQA+K D+LI DTAGRLH  + LM  + K+ RV+ RLD HAP  VL V+D  
Sbjct: 212 VVYDGLQAAQARKTDILIADTAGRLHTQTNLMDEVRKVKRVMGRLDEHAPDEVLLVVDGG 271

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q   FH   G TG+++TK+DGTA+GG L  +     +PV F+GVGE   DL+ 
Sbjct: 272 TGQNALSQARQFHEALGLTGIVVTKLDGTAKGGVLFALAEQLGVPVRFIGVGEKAEDLQR 331

Query: 301 FVAKDFSAVITG 312
           F A+ F   + G
Sbjct: 332 FDARAFVRALLG 343


>gi|160877397|ref|YP_001556713.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS195]
 gi|160862919|gb|ABX51453.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS195]
 gi|315269601|gb|ADT96454.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS678]
          Length = 540

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 192/303 (63%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ 
Sbjct: 231 KEGLFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKN 290

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   K +     LYD+  E + K L P++ P   D ++ P VIL+VGVNGVGKTT I
Sbjct: 291 LTEQASRKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTI 350

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + 
Sbjct: 351 GKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQA 410

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+KVDVLI DTAGRL N + LM  + K++RV+K+LDP  PH V+  LDA+TGQNA+ Q
Sbjct: 411 AKARKVDVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPDTPHEVMLTLDASTGQNAISQ 470

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+ ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F  
Sbjct: 471 AQLFQEAVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEFID 530

Query: 309 VIT 311
            + 
Sbjct: 531 ALF 533


>gi|82703851|ref|YP_413417.1| signal recognition particle-docking protein FtsY [Nitrosospira
           multiformis ATCC 25196]
 gi|82411916|gb|ABB76025.1| signal recognition particle-docking protein FtsY [Nitrosospira
           multiformis ATCC 25196]
          Length = 328

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 184/314 (58%), Gaps = 10/314 (3%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
              + +W  ++ +G + T   L + ++ +     +D+ + EE+E +L+ +D GV+    +
Sbjct: 15  EPPNSNWGVRVRQGLSRTRNNLGKRLSGLFGGGAIDEDLYEEMETILLTADAGVSATTWL 74

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +EEL  K     ++    L + + E +  +L PL++P +   +H P +I++ GVNG GKT
Sbjct: 75  LEELRRKVKRNGLTDASQLKEALQEALVDLLEPLAQPLDTS-AHHPFIIMLTGVNGAGKT 133

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD----AAAL 181
           T IGKL+      G  V+LAAGDTFR+AA +QL  W +R     +  E         AA+
Sbjct: 134 TSIGKLAHYYQLQGKSVLLAAGDTFRAAAREQLMAWGERNRVAVIAQESSDQQRGDPAAV 193

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A   A+A+ +D+++ DTAGRL     LM  I K+ RV+ + +P APH  L VLDA T
Sbjct: 194 IFDAVNAAKARGIDIVLADTAGRLATQLHLMEEIKKVKRVIAKTEPGAPHETLLVLDANT 253

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGIND 297
           GQNA+ QV+ F    G TGLI+TK+DGTA+GG L  I    +    +PV F+GVGEG++D
Sbjct: 254 GQNAVNQVQAFDDALGLTGLIVTKLDGTAKGGVLAAIARQRQQKVPLPVRFIGVGEGLDD 313

Query: 298 LEPFVAKDFSAVIT 311
           L PFVA++F   + 
Sbjct: 314 LRPFVAREFVGALF 327


>gi|285018841|ref|YP_003376552.1| cell division protein [Xanthomonas albilineans GPE PC73]
 gi|283474059|emb|CBA16560.1| hypothetical cell division protein [Xanthomonas albilineans]
          Length = 421

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 121/304 (39%), Positives = 180/304 (59%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L              +  + S   +LDD + + +E  LI +D+G+     ++E
Sbjct: 118 KPGWRERLRNS------SFARSVGSLFSRNPKLDDDLLDAIETALITADVGIPATTALIE 171

Query: 69  ELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +L  +  A++ +    L   +   +  +L P++KP   D + +P V+L VGVNGVGKTT 
Sbjct: 172 QLRKRMKAREFADATALQRALRADLLAILHPVAKPLQIDPNAKPFVVLTVGVNGVGKTTT 231

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+IW +R     +     +DAA++A++A +
Sbjct: 232 IGKLAKRFKDEGHSLMLAAGDTFRAAAVAQLQIWGERNGVSVIAQGQNADAASVAFDALQ 291

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A+  D+LI DTAGRLH  + LM  +GK+ RV+ +LD  APH VL V+D TTGQNAL 
Sbjct: 292 AGKARGTDILIADTAGRLHTQTGLMNELGKIRRVIGKLDASAPHEVLMVIDGTTGQNALS 351

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F A+ F 
Sbjct: 352 QLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFGIPIRFAGIGERPEDLRVFDAEAFV 411

Query: 308 AVIT 311
             + 
Sbjct: 412 DALL 415


>gi|224476347|ref|YP_002633953.1| putative cell division protein FtsY [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420954|emb|CAL27768.1| putative cell division protein FtsY [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 422

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 128/311 (41%), Positives = 185/311 (59%), Gaps = 6/311 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +G   +    +E + ++I+  R +D+   E LE++LI +D+G     ++V+EL T+
Sbjct: 87  AKFKQGLEKSRENFQEQLNNLIARYRTVDEDFFEALEEMLITADVGFNTVMELVDELRTE 146

Query: 74  RYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNW--DFSHRPHVILVVGVNGVGKTTVIGK 130
              +++     L +V  E I ++                R +VIL+VGVNGVGKTT IGK
Sbjct: 147 AQRRNIKETSDLKEVIVEKIVEIYEQDDDHSEVMNLEDGRLNVILMVGVNGVGKTTTIGK 206

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    G KVMLAAGDTFR+ AI+QLK+W +R   D V    GSD AA+ Y+A   A+
Sbjct: 207 LAHRYKAEGKKVMLAAGDTFRAGAINQLKVWGERVGVDVVSQSEGSDPAAVMYDAINAAK 266

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K VD+LI DTAGRL N + LM  + KM  V+ +  P APH VL  LDATTGQNAL Q  
Sbjct: 267 HKDVDILICDTAGRLQNKANLMNELEKMKHVIGKAVPDAPHEVLLCLDATTGQNALSQAR 326

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F  V   TG+++TK+DGTA+GG ++ I    +IPV ++G+GE ++DL+PF  + +   +
Sbjct: 327 SFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELRIPVKYVGLGEKLDDLQPFNPESYVYGL 386

Query: 311 TGCLDYGEEKI 321
               D  EE +
Sbjct: 387 FA--DMIEETV 395


>gi|91781706|ref|YP_556912.1| signal recognition particle-docking protein FtsY [Burkholderia
           xenovorans LB400]
 gi|91685660|gb|ABE28860.1| signal recognition particle-docking protein FtsY [Burkholderia
           xenovorans LB400]
          Length = 385

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 130/307 (42%), Positives = 183/307 (59%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A    SW+ +L  G + TS  L    T I    ++D+ + EELE  L+ SD GV   + +
Sbjct: 84  AGAKRSWLTRLKTGLSKTSSSL----TGIFVGTKIDEDLYEELETALLMSDAGVDATEYL 139

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E L  K   + ++  + +   +  L+  +L PL K      +  P V+++ GVNG GKT
Sbjct: 140 LEALREKVRTERLTDPQQVKAALRTLLVDLLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKT 198

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL IW  R +   V S+   D AA+ ++A
Sbjct: 199 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVV-SQESGDPAAVIFDA 257

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 258 VGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQEGAPHEVLLVIDANTGQNA 317

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++
Sbjct: 318 LAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEE 377

Query: 306 FSAVITG 312
           FS  + G
Sbjct: 378 FSDALLG 384


>gi|302392419|ref|YP_003828239.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Acetohalobium arabaticum DSM 5501]
 gi|302204496|gb|ADL13174.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Acetohalobium arabaticum DSM 5501]
          Length = 453

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 151/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + KL++    +    +L +  V+  L +    L+ +D+   V +  + ++  +   
Sbjct: 3   FEGLADKLQDTFDKLRGKGKLSEKDVKSALREVKLALLEADVNFKVVKNFISDIEERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K+V       Q+V+  V+E +  ++       +   S  P VI++VG+ G GKTT +GKL
Sbjct: 63  KEVMDSLTPAQQVIKIVNEELTDLMGGTQSKLSI-ASDPPTVIMLVGLQGAGKTTTVGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G + +L AGD +R AAI QL++  +R            D   +A      A++
Sbjct: 122 AKHLHKNGRRPLLVAGDVYRPAAIKQLQVLGERLDQPVFSMGDKQDPVDIAKAGVSHAES 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRLH +  LM  +  +   +       P  +L V+DA TGQ+A+   E 
Sbjct: 182 NGRDVVIIDTAGRLHIDEELMGELKDIKAAVN------PQEILLVVDAMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+ +TK+DG ARGG  + I      P+ F+G GE ++DLEPF     ++ I 
Sbjct: 236 FDDALGVDGITLTKLDGDARGGAALSIRKVTGRPIKFVGTGEKLDDLEPFHPDRMASRIL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDM 300


>gi|56551966|ref|YP_162805.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761948|ref|ZP_04760033.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260752487|ref|YP_003225380.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|56543540|gb|AAV89694.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241373628|gb|EER63200.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258551850|gb|ACV74796.1| signal recognition particle-docking protein FtsY [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 310

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 138/306 (45%), Positives = 194/306 (63%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE   W +K+  G   TS +L E ++ I     LDD   +E+E+ LI  D+G   A +I 
Sbjct: 2   SEETPWYKKIGFGLKRTSERLTENLSSIALKAALDDETLDEIEETLIACDLGPGTAGRIR 61

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E L  +R+ + V+   V   V++ I K+L P++KP   D   RP VILV+GVNG GKTT 
Sbjct: 62  ERLAGERFPQGVTELEVREVVAQEIAKILKPVAKPIEIDAFPRPQVILVIGVNGSGKTTT 121

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL+    +   +VML AGDTFR+AAI QLK+WA+R     +    G+DAA+L ++  K
Sbjct: 122 IAKLAHWFQELDYEVMLVAGDTFRAAAIGQLKVWAERLEIPIISGAEGADAASLVFQGVK 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +  A+  D LI+DTAGRL N S LM  + K+ +VL RL+P APH+V+ VLDAT GQNAL 
Sbjct: 182 EGTAQGTDTLIVDTAGRLQNKSGLMDELAKIKKVLGRLNPAAPHNVILVLDATNGQNALS 241

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+E+F  +AG +GLIMTK+DGTARGG ++     + +P++ +GVGE ++DL PF  +  +
Sbjct: 242 QIEVFKEIAGVSGLIMTKLDGTARGGIMVAAAEKYGLPIHAIGVGESMDDLRPFDPEAVA 301

Query: 308 AVITGC 313
             I G 
Sbjct: 302 RAIVGL 307


>gi|260774826|ref|ZP_05883728.1| signal recognition particle receptor protein FtsY [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609251|gb|EEX35406.1| signal recognition particle receptor protein FtsY [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 411

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 197/312 (63%), Gaps = 1/312 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L    A T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 100 EQEKPTESFFARLKHSLARTKANIGAGFFGLFKDKQIDDELFEELEEQLLIADVGMDTTV 159

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI++ L  K   +++     LY  + E +  +L  + KP   D +  P+VIL+VGVNGVG
Sbjct: 160 KIIDNLTEKASRQELKDGEALYGLLKEEMAGILSTVEKPLEIDTNKTPYVILMVGVNGVG 219

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     V    G+D+A++ Y
Sbjct: 220 KTTTIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVVAQHTGADSASVIY 279

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+AK VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 280 DAIESAKAKGVDVVIADTAGRLQNKANLMEELRKIVRVMKKVDDSAPHEIMLTLDAGTGQ 339

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q ++F  VA  TG+ +TK+DGTA+GG +  +    +IP+ ++GVGEGI+DL PF  
Sbjct: 340 NAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFALADQFQIPIRYIGVGEGIDDLRPFET 399

Query: 304 KDFSAVITGCLD 315
           ++F   +    D
Sbjct: 400 QEFIDALFSRED 411


>gi|257425289|ref|ZP_05601714.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427949|ref|ZP_05604347.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257430582|ref|ZP_05606964.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433343|ref|ZP_05609701.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436185|ref|ZP_05612232.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282914011|ref|ZP_06321798.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918933|ref|ZP_06326668.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924056|ref|ZP_06331732.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus C101]
 gi|293501043|ref|ZP_06666894.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293526591|ref|ZP_06671276.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           M1015]
 gi|257271746|gb|EEV03884.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274790|gb|EEV06277.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278710|gb|EEV09329.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281436|gb|EEV11573.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284467|gb|EEV14587.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314028|gb|EFB44420.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316743|gb|EFB47117.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322079|gb|EFB52403.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           M899]
 gi|290920663|gb|EFD97726.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096048|gb|EFE26309.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|312438387|gb|ADQ77458.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 416

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 128/322 (39%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  EE
Sbjct: 374 QPFNPESYVYGLFADMIEQNEE 395


>gi|82750839|ref|YP_416580.1| signal recognition particle protein [Staphylococcus aureus RF122]
 gi|258423924|ref|ZP_05686809.1| signal recognition particle protein [Staphylococcus aureus A9635]
 gi|82656370|emb|CAI80788.1| signal recognition particle protein [Staphylococcus aureus RF122]
 gi|257845953|gb|EEV69982.1| signal recognition particle protein [Staphylococcus aureus A9635]
 gi|298694528|gb|ADI97750.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ED133]
 gi|302332839|gb|ADL23032.1| cell division protein FtsY [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 416

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 128/322 (39%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  EE
Sbjct: 374 QPFNPESYVYGLFADMIEQNEE 395


>gi|116690829|ref|YP_836452.1| signal recognition particle-docking protein FtsY [Burkholderia
           cenocepacia HI2424]
 gi|116648918|gb|ABK09559.1| signal recognition particle-docking protein FtsY [Burkholderia
           cenocepacia HI2424]
          Length = 388

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 187/309 (60%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   +
Sbjct: 86  QDASAKKSWLARLKTGLAKT----GSSITGVFVNTKIDEDLYEELETALLMSDAGVDATE 141

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +++ L  K  A  ++  + + D + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 142 YLLDALREKVRAGRLTDPQQVKDALHDLLVELLTPLEKSLMLGRAQ-PLVMMIAGVNGAG 200

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 201 KTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV-QQESGDPAAVIF 259

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 260 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQ 319

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 320 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSA 379

Query: 304 KDFSAVITG 312
            +F+  + G
Sbjct: 380 VEFADALLG 388


>gi|296314873|ref|ZP_06864814.1| signal recognition particle-docking protein FtsY [Neisseria
           polysaccharea ATCC 43768]
 gi|296838320|gb|EFH22258.1| signal recognition particle-docking protein FtsY [Neisseria
           polysaccharea ATCC 43768]
          Length = 469

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 184/308 (59%), Gaps = 2/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
                  SW  +L +G   +  K+ + +  +    ++D+ + EELE +LI  D+G+   +
Sbjct: 162 PTEESKPSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEATE 221

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +++++  +   K +     L   + + ++ ++ PL KP     +  P VI++ G+NG G
Sbjct: 222 YLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAG 281

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ +
Sbjct: 282 KTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCF 340

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQ
Sbjct: 341 DAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPDAPHEIIVVLDANIGQ 400

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A
Sbjct: 401 NAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDA 460

Query: 304 KDFSAVIT 311
           + F   + 
Sbjct: 461 RAFVDALL 468


>gi|283770297|ref|ZP_06343189.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus H19]
 gi|283460444|gb|EFC07534.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus H19]
          Length = 416

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 128/322 (39%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  EE
Sbjct: 374 QPFNPESYVYGLFADMIEQNEE 395


>gi|304412286|ref|ZP_07393894.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS183]
 gi|307306070|ref|ZP_07585815.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica BA175]
 gi|304349321|gb|EFM13731.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS183]
 gi|306910943|gb|EFN41370.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica BA175]
          Length = 576

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 192/303 (63%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ 
Sbjct: 267 KEGLFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKN 326

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   K +     LYD+  E + K L P++ P   D ++ P VIL+VGVNGVGKTT I
Sbjct: 327 LTEQASRKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTI 386

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + 
Sbjct: 387 GKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQA 446

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+KVDVLI DTAGRL N + LM  + K++RV+K+LDP  PH V+  LDA+TGQNA+ Q
Sbjct: 447 AKARKVDVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPETPHEVMLTLDASTGQNAISQ 506

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+ ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F  
Sbjct: 507 AQLFQEAVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEFID 566

Query: 309 VIT 311
            + 
Sbjct: 567 ALF 569


>gi|84393534|ref|ZP_00992288.1| Signal recognition particle GTPase [Vibrio splendidus 12B01]
 gi|84375813|gb|EAP92706.1| Signal recognition particle GTPase [Vibrio splendidus 12B01]
          Length = 417

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 128/305 (41%), Positives = 196/305 (64%), Gaps = 1/305 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
             + S+  +L +  + T   +  G   +   +++D+ + EELE+ L+ +D+G+    KI+
Sbjct: 109 KPTESFFARLKRSLSRTKENIGAGFFGLFKGKQIDEDLFEELEEQLLIADVGMNTTVKII 168

Query: 68  EELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           E L  K    D+     LY  + E +  +L  + +P   D +  P+VIL+VGVNGVGKTT
Sbjct: 169 ENLTEKASRNDLKDGEALYGLLKEEMADILSQVEQPLVVDTTKTPYVILMVGVNGVGKTT 228

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K+    G KVMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ Y+A 
Sbjct: 229 TIGKLAKQFQSEGKKVMLAAGDTFRAAAVEQLQVWGQRNNVPVIAQHTGADSASVIYDAI 288

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+ VDV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+
Sbjct: 289 EAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAI 348

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PF +KDF
Sbjct: 349 SQAKLFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRYIGVGEGIDDLRPFESKDF 408

Query: 307 SAVIT 311
              + 
Sbjct: 409 IEALF 413


>gi|90581426|ref|ZP_01237221.1| putative cell division protein FtsY [Vibrio angustum S14]
 gi|90437403|gb|EAS62599.1| putative cell division protein FtsY [Vibrio angustum S14]
          Length = 459

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 198/309 (64%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++   +S  +  +L +G   T      G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 147 EQEKPKSEGFFARLMRGLKKTKTNFGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTT 206

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+E L  K   K++     LY  + + +  ML  + +P   D S +P+VIL+VGVNGV
Sbjct: 207 LKIIENLTDKASKKELKDGEALYGLLKDELADMLAKVEQPLVIDTSKKPYVILMVGVNGV 266

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ 
Sbjct: 267 GKTTTIGKLAKQCQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVI 326

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+AK VDV+I DTAGRL N   LM  + K++RV+K++D  APH ++  +DA TG
Sbjct: 327 FDAIESAKAKNVDVVIADTAGRLQNKGNLMEELRKIVRVMKKVDVDAPHEIMLTVDAGTG 386

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  +G+ +TK+DGTA+GG +  +     IP+ ++GVGEGI+DL PF 
Sbjct: 387 QNAISQAKLFSDVAPVSGITITKLDGTAKGGVIFAVADQFNIPIRYIGVGEGIDDLRPFA 446

Query: 303 AKDFSAVIT 311
           A++F   + 
Sbjct: 447 AEEFIEALF 455


>gi|262048133|ref|ZP_06021020.1| signal recognition particle [Staphylococcus aureus D30]
 gi|259163699|gb|EEW48254.1| signal recognition particle [Staphylococcus aureus D30]
          Length = 416

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 128/322 (39%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAKKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  EE
Sbjct: 374 QPFNPESYVYGLFADMIEQNEE 395


>gi|332289253|ref|YP_004420105.1| cell division protein FtsY [Gallibacterium anatis UMN179]
 gi|330432149|gb|AEC17208.1| cell division protein FtsY [Gallibacterium anatis UMN179]
          Length = 431

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 121/303 (39%), Positives = 189/303 (62%), Gaps = 2/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
              +  +L +G   T   +  G   + S +++DD + EELE+ L+ +DIGV    KI++ 
Sbjct: 124 KQGFFSRLVQGLVKTKQNIGAGFRSLFSGKKIDDDLFEELEEQLLIADIGVPTTNKIIKN 183

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      K +    +LY  +   +  +L P  +P       +P VIL+VGVNGVGKTT I
Sbjct: 184 LTEHASRKQLKEAELLYQQLKVELATILKPNEQPLVL-TDKKPFVILMVGVNGVGKTTTI 242

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A + 
Sbjct: 243 GKLAKQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQATGADSASVLFDAMQS 302

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A AK VD+LI DTAGRL N + LM  + K++RV+K+ D +APH ++  LDA TGQNA+ Q
Sbjct: 303 ATAKGVDILIADTAGRLQNKNNLMDELRKIVRVMKKYDENAPHEIMLTLDAGTGQNAISQ 362

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           +++F+   G TG+ +TK+DGTA+GG +  +     +P+ ++GVGE I+DL PF +++F  
Sbjct: 363 MKLFNEAVGITGITLTKLDGTAKGGVIFALADQFNVPIRYIGVGEKIDDLRPFNSEEFIE 422

Query: 309 VIT 311
            + 
Sbjct: 423 ALF 425


>gi|323441010|gb|EGA98717.1| signal recognition particle protein [Staphylococcus aureus O11]
 gi|323442327|gb|EGA99957.1| signal recognition particle protein [Staphylococcus aureus O46]
          Length = 416

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 128/322 (39%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNIE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  EE
Sbjct: 374 QPFNPESYVYGLFADMIEQNEE 395


>gi|254805877|ref|YP_003084098.1| signal recognition particle protein [Neisseria meningitidis
           alpha14]
 gi|254669419|emb|CBA08634.1| signal recognition particle protein [Neisseria meningitidis
           alpha14]
          Length = 421

 Score =  301 bits (771), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + + ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAHGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|15924225|ref|NP_371759.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926818|ref|NP_374351.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267726|ref|YP_001246669.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393784|ref|YP_001316459.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus JH1]
 gi|156979556|ref|YP_001441815.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315593|ref|ZP_04838806.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006022|ref|ZP_05144623.2| signal recognition particle [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795709|ref|ZP_05644688.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9781]
 gi|258415933|ref|ZP_05682203.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9763]
 gi|258419680|ref|ZP_05682647.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9719]
 gi|258434851|ref|ZP_05688925.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9299]
 gi|258444573|ref|ZP_05692902.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A8115]
 gi|258447594|ref|ZP_05695738.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A6300]
 gi|258454815|ref|ZP_05702779.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A5937]
 gi|269202851|ref|YP_003282120.1| cell division protein FtsY, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892722|ref|ZP_06300957.1| signal recognition particle receptor [Staphylococcus aureus A8117]
 gi|282927576|ref|ZP_06335192.1| signal recognition particle receptor [Staphylococcus aureus A10102]
 gi|295407174|ref|ZP_06816975.1| signal recognition particle receptor [Staphylococcus aureus A8819]
 gi|296274792|ref|ZP_06857299.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297245939|ref|ZP_06929798.1| signal recognition particle receptor [Staphylococcus aureus A8796]
 gi|13701035|dbj|BAB42330.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247005|dbj|BAB57397.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147740795|gb|ABQ49093.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946236|gb|ABR52172.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus JH1]
 gi|156721691|dbj|BAF78108.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257789681|gb|EEV28021.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9781]
 gi|257839269|gb|EEV63743.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9763]
 gi|257844265|gb|EEV68647.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9719]
 gi|257849212|gb|EEV73194.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A9299]
 gi|257850066|gb|EEV74019.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A8115]
 gi|257853785|gb|EEV76744.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A6300]
 gi|257863198|gb|EEV85962.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A5937]
 gi|262075141|gb|ACY11114.1| cell division protein FtsY, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282590579|gb|EFB95656.1| signal recognition particle receptor [Staphylococcus aureus A10102]
 gi|282764719|gb|EFC04844.1| signal recognition particle receptor [Staphylococcus aureus A8117]
 gi|285816917|gb|ADC37404.1| Signal recognition particle receptor protein FtsY (=alpha subunit)
           [Staphylococcus aureus 04-02981]
 gi|294968027|gb|EFG44055.1| signal recognition particle receptor [Staphylococcus aureus A8819]
 gi|297177103|gb|EFH36357.1| signal recognition particle receptor [Staphylococcus aureus A8796]
 gi|312829629|emb|CBX34471.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315131028|gb|EFT87012.1| signal recognition particle [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727415|gb|EGG63871.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 416

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 127/322 (39%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNIE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  +E
Sbjct: 374 QPFNPESYVYGLFADMIEQNDE 395


>gi|89092453|ref|ZP_01165407.1| signal recognition particle receptor FtsY [Oceanospirillum sp.
           MED92]
 gi|89083541|gb|EAR62759.1| signal recognition particle receptor FtsY [Oceanospirillum sp.
           MED92]
          Length = 458

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 129/312 (41%), Positives = 193/312 (61%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGV 60
           + +    E   +  ++  G + T   L E + ++   ++ +D+ + EE+E LL+ +D+GV
Sbjct: 146 TPEPPVEEKKGFFARIKSGLSKTKANLTEQLGNLFLGAKEIDEDLLEEIETLLLMADVGV 205

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               +I+  L  K   K +   + L   + E +  +L    +P N     +P+VIL+VGV
Sbjct: 206 EATTEIIGRLTDKVERKQLGDAQALQVALKEELAGLLHRSEEPLNIQCEKKPYVILMVGV 265

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A
Sbjct: 266 NGVGKTTTIGKLAKRFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSA 325

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+A + AQAK VDVLI DTAGRL N   LM  + K++RV K+L P APH V+ VLDA
Sbjct: 326 SVIYDAVQSAQAKGVDVLIADTAGRLQNKDNLMQELEKVVRVTKKLSPEAPHEVMLVLDA 385

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNAL Q ++F    G TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL 
Sbjct: 386 GTGQNALSQAKIFKDSVGVTGISLTKLDGTAKGGVIFAIAKQMDLPIRFIGVGEQIDDLR 445

Query: 300 PFVAKDFSAVIT 311
           PF +++F   + 
Sbjct: 446 PFKSQEFVDALF 457


>gi|3334298|sp|O30391|FTSY_NEIMC RecName: Full=Cell division protein ftsY homolog
 gi|2580590|gb|AAB97510.1| putative transcriptional regulator [Neisseria meningitidis]
          Length = 421

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 184/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G   +  K+ + +  +    ++D+ + EELE +LI SD+ +   + +
Sbjct: 116 EEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITSDMDMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|120600697|ref|YP_965271.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           W3-18-1]
 gi|120560790|gb|ABM26717.1| signal recognition particle-docking protein FtsY [Shewanella sp.
           W3-18-1]
          Length = 480

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 192/303 (63%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    +++ +
Sbjct: 171 KEGLFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLINK 230

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      K +     LYD+  + + K L P++ P   + ++ P VIL+VGVNGVGKTT I
Sbjct: 231 LTEHASRKQLKDAEALYDLLRDELQKTLDPVAIPLVPNNANGPFVILMVGVNGVGKTTTI 290

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A++ ++A + 
Sbjct: 291 GKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVVAQHTGADSASVLFDALQA 350

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+KVDVLI DTAGRL N + LM  + K++RV+K+LDP APH V+  LDA+TGQNA+ Q
Sbjct: 351 AKARKVDVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQ 410

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TGL ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F  
Sbjct: 411 AKLFQEAVGVTGLTISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEFID 470

Query: 309 VIT 311
            + 
Sbjct: 471 ALF 473


>gi|269940727|emb|CBI49108.1| putative cell division protein [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 416

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 128/322 (39%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRFKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  EE
Sbjct: 374 QPFNPESYVYGLFADMIEQNEE 395


>gi|314936603|ref|ZP_07843950.1| cell division protein FtsY [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655222|gb|EFS18967.1| cell division protein FtsY [Staphylococcus hominis subsp. hominis
           C80]
          Length = 409

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 125/309 (40%), Positives = 187/309 (60%), Gaps = 8/309 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R +D+   E LE++LI +D+G   
Sbjct: 71  EEIEAQKMG--AKFKAGLEKSRENFQEQLNNLIARYRTVDEDFFEALEEMLITADVGFNT 128

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKML---MPLSKPFNWDFSHRPHVILVVG 118
             ++ +EL T+   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 129 VMQLTDELRTEAQRRNIKETEGLREVIVEKIVEIYHQEDDHSEAMNIE-DGRLNVILMVG 187

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI+QL++W DR   + +    GSD 
Sbjct: 188 VNGVGKTTTIGKLAHRYKMEGKKVMLAAGDTFRAGAIEQLQVWGDRVGVEVIRQSEGSDP 247

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LD
Sbjct: 248 AAVVYDAINAAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAVPDAPHEALLCLD 307

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 308 ATTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDL 367

Query: 299 EPFVAKDFS 307
           +PF  + + 
Sbjct: 368 QPFNPESYV 376


>gi|17545105|ref|NP_518507.1| cell division protein [Ralstonia solanacearum GMI1000]
 gi|17427396|emb|CAD13914.1| putative cell division protein [Ralstonia solanacearum GMI1000]
          Length = 328

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 179/308 (58%), Gaps = 7/308 (2%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V      W+ +L  G + TS  L    T +    ++D+ + EELE  L+ +D GV   + 
Sbjct: 27  VEQARKGWMSRLRSGLSKTSKSL----TTLFVGVKVDEALFEELETALLMADAGVDATEY 82

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++EL  +  A+ +     +   + +L+ ++L PL K         P VI++ GVNG GK
Sbjct: 83  LLDELRRRVKAQRIETAEGVKTALRDLLIELLHPLEKTMVLGRDQ-PTVIMIAGVNGAGK 141

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL K     G  V+LAAGDTFR+AA +QL IW  R +   V  E   D AA+ ++
Sbjct: 142 TTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQE-SGDPAAVIFD 200

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+A+ +D+++ DTAGRL     LM  + K+ RV+ +    APH  L V+DA TGQN
Sbjct: 201 AVNAARARGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQN 260

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A+
Sbjct: 261 ALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAR 320

Query: 305 DFSAVITG 312
           +F+  + G
Sbjct: 321 EFADALLG 328


>gi|208780176|ref|ZP_03247518.1| signal recognition particle-docking protein FtsY [Francisella
           novicida FTG]
 gi|208743825|gb|EDZ90127.1| signal recognition particle-docking protein FtsY [Francisella
           novicida FTG]
          Length = 331

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 192/313 (61%), Gaps = 2/313 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           +          +L  G + T+ K   G++ I+   + +D+ + E++E  L+ +D+GV   
Sbjct: 19  QEQDNKKGLFSRLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEAT 78

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +IV  L  K    ++     L   + + + ++++P  KP   D    P VILVVGVNGV
Sbjct: 79  DEIVAYLRDKVARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGV 138

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W +R +   V    G+D+A++ 
Sbjct: 139 GKTTTIGKLTKKLQSQGKSVILAAGDTFRAAAVEQLREWGNRNNTHVVYQHEGADSASVI 198

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A++K +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG
Sbjct: 199 YDAISSAKSKGIDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTG 258

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            NAL Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F 
Sbjct: 259 GNALSQAEAFNQIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFN 318

Query: 303 AKDFSAVITGCLD 315
           A+DF+  +    D
Sbjct: 319 ARDFTTALFNSND 331


>gi|330993224|ref|ZP_08317160.1| Cell division protein ftsY-like protein [Gluconacetobacter sp.
           SXCC-1]
 gi|329759626|gb|EGG76134.1| Cell division protein ftsY-like protein [Gluconacetobacter sp.
           SXCC-1]
          Length = 334

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 142/303 (46%), Positives = 212/303 (69%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +L +  +L  G + ++ KL  GIT + + R+LDD   EELEDLLI +D+G +VA+K+++ 
Sbjct: 2   ALGFFSRLKAGLSRSTQKLSGGITAVFTRRKLDDEALEELEDLLISADLGPSVAEKVIDS 61

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               ++ K+V+ + V   ++E I  +L P++ PF  D  H+PHV+LVVGVNG GKTT IG
Sbjct: 62  FRRAKFGKEVTDEEVRAALAEEIANILQPVAIPFEPDPKHKPHVVLVVGVNGTGKTTTIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+++   + G KVM+ AGDTFR+AA++QL++W +RT A  +     +DAA LA+EA K+A
Sbjct: 122 KMARFYGEQGKKVMMVAGDTFRAAAVEQLQVWGERTGAPVIAGRPNADAAGLAFEALKRA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A++ D+L++DTAGRLHN S LM  + K+IRV+++ D  APHSVL VLDATTGQNA+ QV
Sbjct: 182 TAEQADLLLVDTAGRLHNKSALMEELAKIIRVMRKFDETAPHSVLLVLDATTGQNAVEQV 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  +   TGL++TK+DG+ARGG ++ +     +PV+ +GVGE  +DL PF A+ F+  
Sbjct: 242 RVFKELVNVTGLVVTKLDGSARGGIVVALADAFGLPVHLVGVGEQADDLRPFSAEAFARG 301

Query: 310 ITG 312
           + G
Sbjct: 302 LVG 304


>gi|167585413|ref|ZP_02377801.1| Cell division transporter substrate-binding protein FtsY
           [Burkholderia ubonensis Bu]
          Length = 345

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 128/307 (41%), Positives = 183/307 (59%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +   SW+ +L  G A TS      IT +  S ++D+ + EELE  L+ SD GV   + +
Sbjct: 45  PNAKKSWLARLKSGLAKTS----SSITGVFVSTKIDEDLYEELETALLMSDAGVDATEYL 100

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++ L  K R  +    Q+V   + +L+  +L PL K      +  P V+++ GVNG GKT
Sbjct: 101 LDALREKVRTGRLTDPQQVKAALHDLLVDLLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKT 159

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A
Sbjct: 160 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLTIWGERNNVTVV-QQESGDPAAVIFDA 218

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 219 VSAARARGIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNA 278

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A +
Sbjct: 279 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVE 338

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 339 FADALLG 345


>gi|167909452|ref|ZP_02496543.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 112]
          Length = 345

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 184/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  
Sbjct: 48  KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGA 103

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 104 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 162

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 163 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 221

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 222 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 281

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 282 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 341

Query: 309 VITG 312
            + G
Sbjct: 342 ALLG 345


>gi|53724091|ref|YP_104611.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei ATCC 23344]
 gi|52427514|gb|AAU48107.1| signal recognition particle-docking protein FtsY [Burkholderia
           mallei ATCC 23344]
          Length = 327

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 128/304 (42%), Positives = 186/304 (61%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + +++ 
Sbjct: 30  KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDA 85

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K F    +  P V+++ GVNG GKTT I
Sbjct: 86  LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSFVLGRAQ-PLVMMIAGVNGAGKTTSI 144

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 145 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 203

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 204 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 263

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 264 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 323

Query: 309 VITG 312
            + G
Sbjct: 324 ALLG 327


>gi|227510450|ref|ZP_03940499.1| signal recognition particle-docking protein FtsY [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227190102|gb|EEI70169.1| signal recognition particle-docking protein FtsY [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 483

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 191/312 (61%), Gaps = 10/312 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           + + ASES    +   KG A +     + +  ++++ R +D+   ++LED+LI SD+G  
Sbjct: 165 DSEAASES-GATQSYEKGLAKSRSSFGQKLNALLANFRHVDESFFDDLEDMLIESDVGFE 223

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVIL 115
            + KI ++L  +   ++    + + +V  ++ K++    +  N +          P VIL
Sbjct: 224 TSMKIADDLREEVKLQNAKKPKDVQNV--IVKKLIDMYDQAGNGENPAINLAKSGPTVIL 281

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VGVNGVGKTT IGK++K   D G KV+LAA DTFR+ AI+QL +WA R   D V S+  
Sbjct: 282 MVGVNGVGKTTTIGKMAKMYKDQGKKVVLAAADTFRAGAIEQLNVWAQRDGVDIVKSKPK 341

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD +++ ++A K+A+ +  D+L++DTAGRL N   LM  + KM ++L R  P APH VL 
Sbjct: 342 SDPSSVVFDAVKKARDEHYDILMVDTAGRLQNKVNLMNELSKMKKILTREIPEAPHEVLL 401

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNA+ Q +MF      TG+++TK+DGTARGG ++ I     +PV ++G+GE +
Sbjct: 402 VLDATTGQNAMTQAKMFKEATDVTGIVLTKLDGTARGGIVLAIRSELHLPVKYVGLGEKV 461

Query: 296 NDLEPFVAKDFS 307
            DL+PF   DF 
Sbjct: 462 TDLKPFDPNDFV 473


>gi|227513459|ref|ZP_03943508.1| signal recognition particle-docking protein FtsY [Lactobacillus
           buchneri ATCC 11577]
 gi|227083332|gb|EEI18644.1| signal recognition particle-docking protein FtsY [Lactobacillus
           buchneri ATCC 11577]
          Length = 481

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 125/312 (40%), Positives = 192/312 (61%), Gaps = 10/312 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           + + ASES   I+   KG A +     + +  ++++ R +D+   ++LED+LI SD+G  
Sbjct: 163 DSETASES-GAIQSYEKGLAKSRSSFGQKLNALLANFRHVDESFFDDLEDMLIESDVGFE 221

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVIL 115
            + KI ++L  +   ++    + + +V  ++ K++    +  N +          P VIL
Sbjct: 222 TSMKIADDLREEVKLQNAKKPKDVQNV--IVKKLIDMYDQAGNGENPAINLAKSGPTVIL 279

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VGVNGVGKTT IGK++K   D G KV+LAA DTFR+ AI+QL +WA R   D V S+  
Sbjct: 280 MVGVNGVGKTTTIGKMAKMYKDQGKKVVLAAADTFRAGAIEQLNVWAQRDGVDIVKSKPK 339

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD +++A++A K+A+ +  D+L++DTAGRL N   LM  + KM ++L R  P  PH VL 
Sbjct: 340 SDPSSVAFDAVKKARDEHYDILMVDTAGRLQNKVNLMNELSKMKKILTREIPEGPHEVLL 399

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNA+ Q +MF      TG+++TK+DGTARGG ++ I     +PV ++G+GE +
Sbjct: 400 VLDATTGQNAMTQAKMFKETTDVTGIVLTKLDGTARGGIVLAIRSELHLPVKYVGLGEKV 459

Query: 296 NDLEPFVAKDFS 307
            DL+PF   DF 
Sbjct: 460 TDLKPFDPNDFV 471


>gi|294650502|ref|ZP_06727861.1| signal recognition particle-docking protein FtsY [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823645|gb|EFF82489.1| signal recognition particle-docking protein FtsY [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 371

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 132/307 (42%), Positives = 196/307 (63%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
             +S  +  ++  G   T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   + 
Sbjct: 61  EEKSGGFFGRMKDGLTKTRRSFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKT 120

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVGK
Sbjct: 121 IIANLTERTARGDLIYSHALYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGK 180

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++
Sbjct: 181 TTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIPVVAQGHGADSASVIFD 240

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           AF+ A+AK +DVLI DTAGRL N S LM  + K+ RV++++D  APH ++ ++DA TGQN
Sbjct: 241 AFESARAKGIDVLIADTAGRLQNKSHLMEELKKVKRVMQKIDATAPHEIMLIVDAGTGQN 300

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ QV++F    G TG+ +TK+DGTA+GG L  I     +P+ ++GVGE I+DL PF AK
Sbjct: 301 AINQVQLFDEAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRYIGVGEKIDDLRPFSAK 360

Query: 305 DFSAVIT 311
            F A + 
Sbjct: 361 SFVAALF 367


>gi|282916485|ref|ZP_06324247.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus D139]
 gi|282319925|gb|EFB50273.1| signal recognition particle receptor [Staphylococcus aureus subsp.
           aureus D139]
          Length = 416

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 128/322 (39%), Positives = 190/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +    ++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRHNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  EE
Sbjct: 374 QPFNPESYVYGLFADMIEQNEE 395


>gi|317153561|ref|YP_004121609.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943812|gb|ADU62863.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 457

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 120/300 (40%), Positives = 188/300 (62%), Gaps = 5/300 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             KL+ G A T  ++ + I  ++S+   L+D   +E E++LI +D+G+  A ++++ L  
Sbjct: 160 FLKLSDGIAKTREQITKRIDGLLSAHSSLNDDFWDEFEEILIMADVGMEAAGQLMDNLKA 219

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +             D  E++ + L  + + P   +  + P V+++VGVNGVGKTT I KL
Sbjct: 220 RARKAGTDDPE---DFKEILRQELEEIFRLPPRIEAVNPPEVLMMVGVNGVGKTTTIAKL 276

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KV++AAGDTFR+AAI+QL++WA R  A F     GSD AA+AYEA  +A +
Sbjct: 277 AYRAQLQGRKVLIAAGDTFRAAAIEQLEVWAGRIGAGFFAKAEGSDPAAVAYEAMDKAVS 336

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+L++DTAGRLH    LM  + K+ RVL +  P APH  + V+DATTGQNAL Q ++
Sbjct: 337 EGYDLLLLDTAGRLHTKVNLMEELKKVQRVLGKKHPGAPHRCILVIDATTGQNALAQTKL 396

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G   +I+TK+DGTA+GG ++ + + +K+P+ F+G+GE + DL PF  KDF+  + 
Sbjct: 397 FNEAVGLDEIILTKLDGTAKGGVVVAVTLQNKLPITFVGLGEKMEDLRPFNGKDFAKALL 456


>gi|52424195|ref|YP_087332.1| FtsY protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306247|gb|AAU36747.1| FtsY protein [Mannheimia succiniciproducens MBEL55E]
          Length = 468

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 123/301 (40%), Positives = 189/301 (62%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G   + + +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 163 GFFSRLVKGLLKTKQNIGAGFLSLFTGKKIDDELFEELEEQLLIADIGVPTTAKIIKNLT 222

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                  +   + LY  +   + ++L P+ +P   D   +P+VIL+VGVNGVGKTT IGK
Sbjct: 223 EHASRAQLKDTQALYQQLKVEMAEILKPVEQPLIVDTGRKPYVILMVGVNGVGKTTTIGK 282

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+++    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ ++A + A 
Sbjct: 283 LARQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAA 342

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 343 ARNADILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAK 402

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +FH   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL PF A++F   +
Sbjct: 403 LFHEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLRPFHAEEFIDAL 462

Query: 311 T 311
            
Sbjct: 463 F 463


>gi|78222392|ref|YP_384139.1| signal recognition particle-docking protein FtsY [Geobacter
           metallireducens GS-15]
 gi|78193647|gb|ABB31414.1| signal recognition particle-docking protein FtsY [Geobacter
           metallireducens GS-15]
          Length = 351

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 185/313 (59%), Gaps = 3/313 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIG 59
           +  ++          +L +G + T   L   I  + +  + +D    EELE++LI +DIG
Sbjct: 39  VQAEEPEERKPGLFERLRQGLSKTRDSLVGRIDRLVLGKKEIDADTLEELEEILITADIG 98

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           V    +++  L  +    +++    L   + + I K L    +P   D S  P VI+V+G
Sbjct: 99  VQTTVELIRILEERLSRNELNDGAALRQTLKDEILKRLSRDVRPLAVD-SASPFVIMVIG 157

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ + S  G KV+LAAGDTFR+AA +QL+IW +RT  D V  + G+D 
Sbjct: 158 VNGVGKTTTIGKLAARFSREGKKVVLAAGDTFRAAAAEQLEIWGERTGCDVVRHKEGADP 217

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           +A+ ++  K A A+K DVLI+DTAGRLH    LM  + K+ R++ R  P APH  L VLD
Sbjct: 218 SAVVFDGIKAAVARKADVLIVDTAGRLHTKVNLMEELKKVRRIMDREIPGAPHETLLVLD 277

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQNAL Q ++F   A  TG+ +TK+DGTA+GG +  I    +IPV ++GVGEG++DL
Sbjct: 278 AATGQNALSQAKLFKEAAEVTGIALTKLDGTAKGGIVAAICNEFRIPVRYIGVGEGVDDL 337

Query: 299 EPFVAKDFSAVIT 311
             F   +F   + 
Sbjct: 338 RDFDPAEFVDALF 350


>gi|187922585|ref|YP_001894227.1| signal recognition particle-docking protein FtsY [Burkholderia
           phytofirmans PsJN]
 gi|187713779|gb|ACD15003.1| signal recognition particle-docking protein FtsY [Burkholderia
           phytofirmans PsJN]
          Length = 386

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 134/307 (43%), Positives = 184/307 (59%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A    SW+ +L  G + TS  L    T I    ++D+ + EELE  L+ SD GV   + +
Sbjct: 85  AGAKRSWLTRLKTGLSKTSSNL----TGIFVGTKIDEDLYEELETALLMSDAGVDATEFL 140

Query: 67  VEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E L  K  A+  V  Q+V   +  L+  +L PL K      +  P V+++ GVNG GKT
Sbjct: 141 LEALREKVRAERLVDPQQVKTALRTLLVDLLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKT 199

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL IW  R +   V S+   D AA+ ++A
Sbjct: 200 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVV-SQESGDPAAVIFDA 258

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 259 VGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNA 318

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++
Sbjct: 319 LAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEE 378

Query: 306 FSAVITG 312
           FS  + G
Sbjct: 379 FSDALLG 385


>gi|309379872|emb|CBX21648.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 487

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 184/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI  D+G+   + +
Sbjct: 182 EEHKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEATEYL 241

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 242 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 301

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 302 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 360

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 361 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 420

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A  
Sbjct: 421 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDACA 480

Query: 306 FSAVIT 311
           F   + 
Sbjct: 481 FVDALL 486


>gi|126172425|ref|YP_001048574.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS155]
 gi|125995630|gb|ABN59705.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS155]
          Length = 621

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 192/303 (63%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ 
Sbjct: 312 KEGLFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKN 371

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   K +     LYD+  E + K L P++ P   D ++ P VIL+VGVNGVGKTT I
Sbjct: 372 LTEQASRKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTI 431

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + 
Sbjct: 432 GKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQA 491

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+KVDVLI DTAGRL N + LM  + K++RV+K+LDP  PH V+  LDA+TGQNA+ Q
Sbjct: 492 AKARKVDVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPDTPHEVMLTLDASTGQNAISQ 551

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+ ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F  
Sbjct: 552 AQLFQEAVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEFID 611

Query: 309 VIT 311
            + 
Sbjct: 612 ALF 614


>gi|158430492|pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
           Receptor Ftsy
          Length = 309

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 125/304 (41%), Positives = 188/304 (61%), Gaps = 2/304 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L  
Sbjct: 1   MFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTE 60

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +     LY  + E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL
Sbjct: 61  GASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A
Sbjct: 120 ARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++
Sbjct: 180 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 239

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF   + 
Sbjct: 240 FHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 299

Query: 312 GCLD 315
              D
Sbjct: 300 ARED 303


>gi|146291397|ref|YP_001181821.1| signal recognition particle-docking protein FtsY [Shewanella
           putrefaciens CN-32]
 gi|145563087|gb|ABP74022.1| signal recognition particle-docking protein FtsY [Shewanella
           putrefaciens CN-32]
          Length = 482

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 192/303 (63%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    +++ +
Sbjct: 173 KEGLFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLINK 232

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      K +     LYD+  + + K L P++ P   + ++ P VIL+VGVNGVGKTT I
Sbjct: 233 LTEHASRKQLKDAEALYDLLRDELQKTLDPVAIPLVPNNANGPFVILMVGVNGVGKTTTI 292

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A++ ++A + 
Sbjct: 293 GKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVVAQHTGADSASVLFDALQA 352

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+KVDVLI DTAGRL N + LM  + K++RV+K+LDP APH V+  LDA+TGQNA+ Q
Sbjct: 353 AKARKVDVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQ 412

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TGL ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F  
Sbjct: 413 AQLFQEAVGVTGLTISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEFID 472

Query: 309 VIT 311
            + 
Sbjct: 473 ALF 475


>gi|217077937|ref|YP_002335655.1| signal recognition particle-docking protein FtsY [Thermosipho
           africanus TCF52B]
 gi|217037792|gb|ACJ76314.1| signal recognition particle-docking protein FtsY [Thermosipho
           africanus TCF52B]
          Length = 294

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 122/301 (40%), Positives = 190/301 (63%), Gaps = 9/301 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  K  +G   T       +  I+S ++LDD  +EE+E+LLI SD+G    + I+  +
Sbjct: 1   MGFFEKFKQGLKKTRESFFGKMKSILSGKKLDDETKEEIEELLILSDVGFEATEYILNRI 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                 +++  +     + +++ ++L   S+        +P VI +VGVNG GKTT  GK
Sbjct: 61  ------EELKGEDAYESLKKVLLEILNFNSE---LKIEKKPFVISMVGVNGSGKTTTAGK 111

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++  S +G  V+LAA DTFR+AAIDQLK+WA+RTS+ F+  + G+D+AA+A++A   A 
Sbjct: 112 LAEYFSKSGKSVVLAACDTFRAAAIDQLKVWAERTSSTFIAHQEGADSAAVAFDAVSHAI 171

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +K+ D++I+DTAGRLH    LM  + K+ RV+K+    APH VL V+DA TGQN L+Q +
Sbjct: 172 SKEKDIVILDTAGRLHTKKNLMEELRKINRVIKKKIEDAPHEVLLVIDAVTGQNGLQQAK 231

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F      TG+++TK+DGTA+GG  I I     IP+ F+G+GEG++DL+PF A+DF   +
Sbjct: 232 IFKEFVDITGIVLTKLDGTAKGGIAIAIAKELGIPIKFVGLGEGVDDLKPFDAEDFVNAL 291

Query: 311 T 311
            
Sbjct: 292 L 292


>gi|226952926|ref|ZP_03823390.1| signal recognition particle-docking protein FtsY [Acinetobacter sp.
           ATCC 27244]
 gi|226836247|gb|EEH68630.1| signal recognition particle-docking protein FtsY [Acinetobacter sp.
           ATCC 27244]
          Length = 371

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 132/307 (42%), Positives = 196/307 (63%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
             +S  +  ++  G   T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   + 
Sbjct: 61  EEKSGGFFGRMKDGLTKTRRSFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKT 120

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVGK
Sbjct: 121 IIANLTERTARGDLIYSHALYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGK 180

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++
Sbjct: 181 TTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIPVVAQGHGADSASVIFD 240

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           AF+ A+AK +DVLI DTAGRL N S LM  + K+ RV++++D  APH ++ ++DA TGQN
Sbjct: 241 AFESARAKGIDVLIADTAGRLQNKSHLMEELKKVKRVMQKIDATAPHEIMLIVDAGTGQN 300

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ QV++F    G TG+ +TK+DGTA+GG L  I     +P+ ++GVGE I+DL PF AK
Sbjct: 301 AINQVQLFDEAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRYIGVGEKIDDLRPFSAK 360

Query: 305 DFSAVIT 311
            F A + 
Sbjct: 361 SFVAALF 367


>gi|209696302|ref|YP_002264233.1| cell division protein FtsY [Aliivibrio salmonicida LFI1238]
 gi|208010256|emb|CAQ80587.1| cell division protein FtsY [Aliivibrio salmonicida LFI1238]
          Length = 410

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 130/310 (41%), Positives = 201/310 (64%), Gaps = 1/310 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            +     + S+  +L +    T   +  G   + S +++D+ + EELE+ L+ +D+G+  
Sbjct: 97  EEVQEKPTESFFARLKRSLQRTKENIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMDT 156

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             KI+  L  K   +D+     LY  + E + ++L+ + +P   D  + PHVIL+VGVNG
Sbjct: 157 TVKIINSLTEKASKRDLKDGEALYGLLKEEMAEILVKVEQPLVIDEKNSPHVILMVGVNG 216

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+K+  + G  V+LAAGDTFR+AA++QL++W  R     +    G+D+A++
Sbjct: 217 VGKTTTIGKLAKQFQNDGKSVILAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASV 276

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A + A+A+KVDV+I DTAGRL N S LM  + K++RV++++DP APH V+  LDA T
Sbjct: 277 IYDAIEAAKARKVDVVIADTAGRLQNKSNLMEELRKIVRVMQKIDPSAPHEVMLTLDAGT 336

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PF
Sbjct: 337 GQNAISQAKLFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRYIGVGEGIDDLRPF 396

Query: 302 VAKDFSAVIT 311
           VA+DF   + 
Sbjct: 397 VAQDFIDALF 406


>gi|152978128|ref|YP_001343757.1| signal recognition particle-docking protein FtsY [Actinobacillus
           succinogenes 130Z]
 gi|150839851|gb|ABR73822.1| signal recognition particle-docking protein FtsY [Actinobacillus
           succinogenes 130Z]
          Length = 504

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 123/301 (40%), Positives = 188/301 (62%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G     S +++DD + EELE+ L+ +DIGV    KI+  L 
Sbjct: 199 GFFSRLLKGLVKTKQNIGAGFRSFFSGKKIDDELFEELEEQLLIADIGVPTTSKIITNLE 258

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                + +    +LY  + + + ++L P+++P   D S +P+VIL+VGVNGVGKTT IGK
Sbjct: 259 QHATRQQLKDADLLYQQLKQEMAEILKPVARPLVIDGSKKPYVILMVGVNGVGKTTTIGK 318

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+++    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 319 LARQFQQQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAS 378

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q  
Sbjct: 379 ARNIDILIADTAGRLQNKNNLMDELKKIVRVIKKYDESAPHEIMLTLDAGTGQNAVSQAR 438

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I     +P+ ++GVGE I DL  F A +F   +
Sbjct: 439 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLRTFDADEFIDAL 498

Query: 311 T 311
            
Sbjct: 499 F 499


>gi|56696224|ref|YP_166581.1| signal recognition particle-docking protein FtsY [Ruegeria pomeroyi
           DSS-3]
 gi|56677961|gb|AAV94627.1| signal recognition particle-docking protein FtsY [Ruegeria pomeroyi
           DSS-3]
          Length = 390

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 127/278 (45%), Positives = 191/278 (68%), Gaps = 1/278 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           +  R LDD + E+LE+LLI +D+GV  A ++   +   R  + +S Q +   +++ I ++
Sbjct: 111 VVRRTLDDDMLEQLEELLIAADMGVDTALRVTANMAEGRIGRKLSTQEIKALLAQEITRI 170

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + P+++P    +  RP V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA+
Sbjct: 171 MEPVARPMPL-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAV 229

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL++W DR     + +  GSD A+LA++A  +AQ    D+L+IDTAGRL N + LM  +
Sbjct: 230 EQLQVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEDGADLLLIDTAGRLQNRADLMEEL 289

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K++RV+++ D  APH+ L VLDATTGQNA+ QVE F  +A  +GL+MTK+DGTA+GG L
Sbjct: 290 AKIVRVIRKKDDTAPHNTLLVLDATTGQNAISQVETFQKLADVSGLVMTKLDGTAKGGIL 349

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           + +     +P++ +GVGE I+DL PF  +DF+A +TG 
Sbjct: 350 VSLADRFGLPIHAIGVGEQIDDLAPFDPEDFAAALTGF 387


>gi|325053854|pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
           (Srp) In Complex With Its Receptor(Sr)
 gi|325053856|pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
           (Srp) In Complex With Its Receptor(Sr)
          Length = 302

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 125/303 (41%), Positives = 188/303 (62%), Gaps = 2/303 (0%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L   
Sbjct: 1   FARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEG 60

Query: 74  RYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              K +     LY  + E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL+
Sbjct: 61  ASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKLA 119

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           ++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A+
Sbjct: 120 RQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKAR 179

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++F
Sbjct: 180 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLF 239

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           H   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF   +  
Sbjct: 240 HEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFA 299

Query: 313 CLD 315
             D
Sbjct: 300 RED 302


>gi|258449436|ref|ZP_05697539.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A6224]
 gi|257857424|gb|EEV80322.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus A6224]
          Length = 416

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 126/322 (39%), Positives = 190/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNIE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P A H  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDALHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  +E
Sbjct: 374 QPFNPESYVYGLFADMIEQNDE 395


>gi|228474984|ref|ZP_04059712.1| cell division protein FtsY [Staphylococcus hominis SK119]
 gi|228270969|gb|EEK12357.1| cell division protein FtsY [Staphylococcus hominis SK119]
          Length = 409

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 124/309 (40%), Positives = 187/309 (60%), Gaps = 8/309 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R +D+   E LE++LI +D+G   
Sbjct: 71  EEIEAQKMG--AKFKAGLEKSRENFQEQLNNLIARYRTVDEDFFEALEEMLITADVGFNT 128

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKML---MPLSKPFNWDFSHRPHVILVVG 118
             ++ +EL T+   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 129 VMQLTDELRTEAQRRNIKETEGLREVIVEKIVEIYHQEDDHSEAMNIE-DGRLNVILMVG 187

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI+QL++W DR   + +    GSD 
Sbjct: 188 VNGVGKTTTIGKLAHRYKMEGKKVMLAAGDTFRAGAIEQLQVWGDRVGVEVIRQSEGSDP 247

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N S LM  + KM RV+ R  P APH  L  LD
Sbjct: 248 AAVVYDAINAAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAVPDAPHEALLCLD 307

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQ+AL Q   F  V   +G+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 308 ATTGQSALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKLDDL 367

Query: 299 EPFVAKDFS 307
           +PF  + + 
Sbjct: 368 QPFNPESYV 376


>gi|307546454|ref|YP_003898933.1| signal recognition particle subunit SRP54 [Halomonas elongata DSM
           2581]
 gi|307218478|emb|CBV43748.1| K03106 signal recognition particle, subunit SRP54 [Halomonas
           elongata DSM 2581]
          Length = 471

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 150/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + +  I    RL +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FQNLSDRLSQTLKSIKGQARLTEDNVKDTLREVRRALLEADVALPVVKAFIDRVRERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+ +  V + +  ++   ++      S  P V+L+ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQQFVKIVQQELEAIMGEANEGLALKGS--PAVVLMAGLQGAGKTTSVAKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KV++ + D +R AAIDQL+  A     DF  S        +A  A K A+
Sbjct: 120 ARYLREREKKKVLVVSADVYRPAAIDQLETLAKEVEVDFFPSSSDQQPVDIAEAAIKHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+++DTAGRL  +  +MA I  +   +       P   L V+DA TGQ+A    +
Sbjct: 180 IQFHDVVLVDTAGRLAIDEAMMAEIQALNSAVS------PDETLFVVDAMTGQDAANTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK DG ARGG  + +      P+ F+GVGE ++ LEPF     ++ I
Sbjct: 234 AFHEALPLTGVILTKADGDARGGAALSVRHITGKPIKFMGVGEKVDALEPFHPDRVASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|84683623|ref|ZP_01011526.1| signal recognition particle-docking protein FtsY [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668366|gb|EAQ14833.1| signal recognition particle-docking protein FtsY [Rhodobacterales
           bacterium HTCC2654]
          Length = 453

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 133/310 (42%), Positives = 201/310 (64%), Gaps = 12/310 (3%)

Query: 5   KVASESLSWIRKLT-KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +   E   +  +L  +G A T+          +  R LDD + E LE+L+I SD+GV  A
Sbjct: 155 EARGEKPGFFGRLMGRGAAKTT----------VVRRVLDDDMLESLEELMIASDMGVDTA 204

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++   +   R  + VSV+ +   +++ I +++ P++KP    + +RP V+LVVGVNG G
Sbjct: 205 LRVSANIAEGRLGRKVSVEEIKEILAKEIARVMEPVAKPLPL-YPNRPQVVLVVGVNGAG 263

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ +   AG  V++AAGDTFR+AA++QL++W +R     + +  GSD A+LA+
Sbjct: 264 KTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQLQVWGERAGVPVLTAPEGSDPASLAF 323

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A  +A+A   D+L+IDTAGRL N   LMA + K++RV+K++D  APH+ L VLDATTGQ
Sbjct: 324 DALTKARADGADLLMIDTAGRLQNREDLMAELAKIVRVIKKIDDSAPHNTLLVLDATTGQ 383

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F  +A  +GL+MTK+DGTA+GG L+ +     +P++ +GVGE I+DL PF  
Sbjct: 384 NALSQVQTFQKLADVSGLVMTKLDGTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDP 443

Query: 304 KDFSAVITGC 313
            DF+  +TG 
Sbjct: 444 DDFAKALTGL 453



 Score = 36.0 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDG 44
          +S+  KL      +S KL++G+  I+    +++ 
Sbjct: 1  MSFFSKLKDRLTKSSSKLEQGLEAIVEDGGVEEE 34


>gi|294626162|ref|ZP_06704768.1| cell division protein FtsY [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599514|gb|EFF43645.1| cell division protein FtsY [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 492

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  LI +D+G+     +++
Sbjct: 189 KPGWRERLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALID 242

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  +++ V  Q +   +   +  +L P+SKP   D S +P V+L VGVNGVGKTT 
Sbjct: 243 GLRKRMKSREFVDAQAMFKALRADLIALLQPVSKPLVIDRSLKPFVVLTVGVNGVGKTTT 302

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W DR     +     +DAA++A++A +
Sbjct: 303 IGKLAKRFKDEGNSLMLAAGDTFRAAAVAQLQAWGDRNGVAVIAQGQNADAASVAFDALQ 362

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DVLI DTAGRLH  + LM  +GK+ RVL ++D  APH VL V+D TTGQNA+ 
Sbjct: 363 AAKARGTDVLIADTAGRLHTQTGLMNELGKIRRVLGKIDAAAPHEVLMVIDGTTGQNAIS 422

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F    F 
Sbjct: 423 QLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFNIPIRFAGIGERPEDLRVFDPVAFV 482

Query: 308 AVIT 311
             + 
Sbjct: 483 DALL 486


>gi|126461266|ref|YP_001042380.1| signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126102930|gb|ABN75608.1| signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 379

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 128/278 (46%), Positives = 190/278 (68%), Gaps = 1/278 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E LE++LI++D+GV  A ++   +   RY + VS + +   ++  I ++L 
Sbjct: 103 RRILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSAREIKEALAAEIARILE 162

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P     S RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++Q
Sbjct: 163 PVARPMPLYPS-RPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQ 221

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W  R     + +  GSD A+LA++A  +AQA+  D+L+IDTAGRL N + LM  + K
Sbjct: 222 LQVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRADLMEELSK 281

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV+ + DP APH+ L VLDATTGQNAL QVE+F  +A  +GL+MTK+DGTA+GG L+ 
Sbjct: 282 IVRVIHKKDPDAPHNTLLVLDATTGQNALNQVEIFRKLADVSGLVMTKLDGTAKGGVLVA 341

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +     +P++ +GVGE I+DL PF  ++F+  + G  D
Sbjct: 342 LADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 379


>gi|153002662|ref|YP_001368343.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS185]
 gi|151367280|gb|ABS10280.1| signal recognition particle-docking protein FtsY [Shewanella
           baltica OS185]
          Length = 611

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 192/303 (63%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ 
Sbjct: 302 KEGLFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLIKN 361

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   K +     LYD+  E + K L P++ P   D ++ P VIL+VGVNGVGKTT I
Sbjct: 362 LTEQASRKQLKDAEALYDLLREEMQKTLDPVAIPLVPDNANGPFVILMVGVNGVGKTTTI 421

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + 
Sbjct: 422 GKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVIAQHTGADSASVLFDALQA 481

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+KVDVLI DTAGRL N + LM  + K++RV+K+LDP  PH V+  LDA+TGQNA+ Q
Sbjct: 482 AKARKVDVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPDTPHEVMLTLDASTGQNAISQ 541

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+ ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F  
Sbjct: 542 AQLFQEAVGVTGITISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEFID 601

Query: 309 VIT 311
            + 
Sbjct: 602 ALF 604


>gi|319428376|gb|ADV56450.1| signal recognition particle-docking protein FtsY [Shewanella
           putrefaciens 200]
          Length = 480

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 192/303 (63%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    +++ +
Sbjct: 171 KEGLFARLKRGLMRTSENIGSGFIGLFRGKKIDDDLFEELEEQLLIADVGVETTTRLINK 230

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      K +     LYD+  + + K L P++ P   + ++ P VIL+VGVNGVGKTT I
Sbjct: 231 LTEHASRKQLKDAEALYDLLRDELQKTLDPVAIPLVPNNANGPFVILMVGVNGVGKTTTI 290

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A++ ++A + 
Sbjct: 291 GKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNDITVVAQHTGADSASVLFDALQA 350

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+KVDVLI DTAGRL N + LM  + K++RV+K+LDP APH V+  LDA+TGQNA+ Q
Sbjct: 351 AKARKVDVLIADTAGRLQNKAHLMEELKKVVRVMKKLDPEAPHEVMLTLDASTGQNAISQ 410

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TGL ++K+DGTA+GG +  I     IP+ ++GVGE I+DL  F +K+F  
Sbjct: 411 AQLFQEAVGVTGLTISKLDGTAKGGVVFAIADKFNIPIRYIGVGEQIDDLRTFNSKEFID 470

Query: 309 VIT 311
            + 
Sbjct: 471 ALF 473


>gi|146276684|ref|YP_001166843.1| signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554925|gb|ABP69538.1| signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 410

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 128/278 (46%), Positives = 191/278 (68%), Gaps = 1/278 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E LE++LI++D+GV  A ++   +   RY + VS + +   ++  I ++L 
Sbjct: 134 RRILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSSREIKEALATEIARILE 193

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P     S RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++Q
Sbjct: 194 PVARPMPLYPS-RPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQ 252

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W  R     + +  GSD A+LA++A  +AQA+  D+L+IDTAGRL N + LM  + K
Sbjct: 253 LQVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRTDLMEELSK 312

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV+++ DP APH+ L VLDATTGQNAL QVE+F  +A  +GL+MTK+DGTA+GG L+ 
Sbjct: 313 IVRVIRKKDPDAPHNTLLVLDATTGQNALSQVEIFRKLADVSGLVMTKLDGTAKGGVLVA 372

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +     +P++ +GVGE I+DL PF  ++F+  + G  D
Sbjct: 373 LADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 410


>gi|167718007|ref|ZP_02401243.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei DM98]
          Length = 337

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 184/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  
Sbjct: 40  KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGA 95

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 96  LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 154

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 155 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 213

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 214 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 273

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 274 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 333

Query: 309 VITG 312
            + G
Sbjct: 334 ALLG 337


>gi|167814132|ref|ZP_02445812.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 91]
          Length = 342

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 184/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  
Sbjct: 45  KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGA 100

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 101 LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 159

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 160 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 218

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 219 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 278

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 279 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 338

Query: 309 VITG 312
            + G
Sbjct: 339 ALLG 342


>gi|167737024|ref|ZP_02409798.1| signal recognition particle-docking protein FtsY [Burkholderia
           pseudomallei 14]
          Length = 337

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 184/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  
Sbjct: 40  KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGA 95

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A  ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 96  LREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 154

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 155 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 213

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 214 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 273

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+G+GE + DL+PF A++F+ 
Sbjct: 274 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFAD 333

Query: 309 VITG 312
            + G
Sbjct: 334 ALLG 337


>gi|134301331|ref|YP_001121299.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|187931064|ref|YP_001891048.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|224456359|ref|ZP_03664832.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|134049108|gb|ABO46179.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|187711973|gb|ACD30270.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|282158413|gb|ADA77804.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 331

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 192/313 (61%), Gaps = 2/313 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           +          +L  G + T+ K   G++ I+   + +D+ + E++E  L+ +D+GV   
Sbjct: 19  QEQDNKKGLFSRLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEAT 78

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +IV  L  K    ++     L   + + + ++++P  KP   D    P VILVVGVNGV
Sbjct: 79  DEIVTYLRDKVARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGV 138

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ 
Sbjct: 139 GKTTTIGKLTKKLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSASVI 198

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A++K +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG
Sbjct: 199 YDAIGSAKSKGIDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTG 258

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            NAL Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F 
Sbjct: 259 GNALNQAEAFNQIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFN 318

Query: 303 AKDFSAVITGCLD 315
           A+DF+  +    D
Sbjct: 319 ARDFTTALFNSND 331


>gi|134297005|ref|YP_001120740.1| signal recognition particle-docking protein FtsY [Burkholderia
           vietnamiensis G4]
 gi|134140162|gb|ABO55905.1| signal recognition particle-docking protein FtsY [Burkholderia
           vietnamiensis G4]
          Length = 377

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 185/309 (59%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   +
Sbjct: 75  QDASAKKSWLSRLKSGLAKT----GSSITSVFVNTKIDEDLYEELETALLMSDAGVDATE 130

Query: 65  KIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++  L  K R  +    Q+V   + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 131 YLLGALREKVRVGRLTDPQQVKAALHDLLVELLQPLEKSLMLGRAQ-PLVMMITGVNGAG 189

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 190 KTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV-QQESGDPAAVIF 248

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 249 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQ 308

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 309 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNA 368

Query: 304 KDFSAVITG 312
            +F+  + G
Sbjct: 369 VEFADALLG 377


>gi|113866393|ref|YP_724882.1| signal recognition particle receptor FtsY [Ralstonia eutropha H16]
 gi|113525169|emb|CAJ91514.1| signal recognition particle receptor FtsY [Ralstonia eutropha H16]
          Length = 386

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 180/312 (57%), Gaps = 7/312 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
              + A   L W+ +L  G + TS  +      +    ++D+ + EELE  L+ +D GV 
Sbjct: 81  PPAQTAEAKLGWMHRLRTGLSKTSRNIGT----LFVGVKVDEALFEELETALLMADAGVE 136

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             + ++ EL  +  A+ +     +   + EL+ ++L PL K         P V+++ GVN
Sbjct: 137 ATEYLLGELRKRVKAERIETAEGVKAALRELLTQLLRPLEKTMALGREQ-PLVMMIAGVN 195

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL K       KV+LAAGDTFR+AA +QL IW +R +   V  E   D AA
Sbjct: 196 GAGKTTSIGKLCKHFQRYDQKVLLAAGDTFRAAAREQLTIWGERNNVTVVAQE-SGDPAA 254

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A   A+A+ +D+++ DTAGRL     LM  + K+ RV+ +  P APH VL V+DA 
Sbjct: 255 VIFDAVNAAKARGIDIVMADTAGRLPTQLHLMEELKKVKRVISKAMPSAPHEVLLVIDAN 314

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL+Q   F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+P
Sbjct: 315 TGQNALQQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQP 374

Query: 301 FVAKDFSAVITG 312
           F A +F+  + G
Sbjct: 375 FKADEFAEALLG 386


>gi|254449085|ref|ZP_05062537.1| signal recognition particle-docking protein FtsY [gamma
           proteobacterium HTCC5015]
 gi|198261277|gb|EDY85570.1| signal recognition particle-docking protein FtsY [gamma
           proteobacterium HTCC5015]
          Length = 325

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 124/318 (38%), Positives = 183/318 (57%), Gaps = 2/318 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVA 61
           N+ +  E       L +G   T   L   I D++ S+R++DD V EE+E  L+ +D+GV 
Sbjct: 7   NEALQDEQQDQTSGLMRGLRKTRDILTADIRDLVASTRQIDDDVMEEIETRLLMADVGVE 66

Query: 62  VAQKIVEEL-LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             + +++ +       +   V  ++  + + +   L   +     D  HRP  IL+VGVN
Sbjct: 67  TTRSVIDAVNRGIEVGQVSDVTSLIRALRDELVAKLTRYTHRLEIDSKHRPTSILMVGVN 126

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT  GKL+K+    G  VMLAAGDTFR+AA++QL+ W  R   + +    G+D+A+
Sbjct: 127 GAGKTTTTGKLAKRFQRQGYGVMLAAGDTFRAAAVEQLEEWGRRNHVEVLGQGTGADSAS 186

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           ++++A   A+A+  DVLI DTAGRLH    LM  + K+ RV+K++D  AP   L V+DAT
Sbjct: 187 VSFDALSAAKARGTDVLIADTAGRLHTQGGLMDELTKIKRVMKKVDESAPTETLLVVDAT 246

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL Q   FH     TGLI+TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ 
Sbjct: 247 QGQNALNQAREFHRAIDLTGLIVTKLDGTAKGGIIFAISHELGLPIRFIGVGESIDDLKE 306

Query: 301 FVAKDFSAVITGCLDYGE 318
           F  K+F   +    D  E
Sbjct: 307 FKPKEFVHALLADSDNEE 324


>gi|313667376|ref|YP_004047660.1| regulatory protein PilA [Neisseria lactamica ST-640]
 gi|313004838|emb|CBN86263.1| regulatory protein PilA [Neisseria lactamica 020-06]
          Length = 502

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               LSW  +L +G   +  K+ + +  +    ++D+ + EELE +LI  D+G+   + +
Sbjct: 197 EEHKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELETVLITGDMGMEATEYL 256

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + + ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 257 MKDVRNRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 316

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 317 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 375

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 376 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNA 435

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     IPV ++GVGEGI+DL PF A+ 
Sbjct: 436 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPIPVRYIGVGEGIDDLRPFDARA 495

Query: 306 FSAVIT 311
           F   + 
Sbjct: 496 FIDALL 501


>gi|107023742|ref|YP_622069.1| signal recognition particle-docking protein FtsY [Burkholderia
           cenocepacia AU 1054]
 gi|105893931|gb|ABF77096.1| signal recognition particle-docking protein FtsY [Burkholderia
           cenocepacia AU 1054]
          Length = 327

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 187/309 (60%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   +
Sbjct: 25  QDASAKKSWLARLKTGLAKT----GSSITGVFVNTKIDEDLYEELETALLMSDAGVDATE 80

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +++ L  K  A  ++  + + D + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 81  YLLDALREKVRAGRLTDPQQVKDALHDLLVELLTPLEKSLMLGRAQ-PLVMMIAGVNGAG 139

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 140 KTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV-QQESGDPAAVIF 198

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 199 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQ 258

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 259 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSA 318

Query: 304 KDFSAVITG 312
            +F+  + G
Sbjct: 319 VEFADALLG 327


>gi|158425332|ref|YP_001526624.1| cell division transporter substrate-binding protein [Azorhizobium
           caulinodans ORS 571]
 gi|158332221|dbj|BAF89706.1| cell division transporter substrate-binding protein [Azorhizobium
           caulinodans ORS 571]
          Length = 313

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 154/311 (49%), Positives = 217/311 (69%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           ++    E   + R+LT G A T+  L +GITD+++ R+LD    EELEDLLIR+D+G A 
Sbjct: 2   SETSPPEKPGFWRRLTSGLARTATSLTQGITDLVTKRKLDAETLEELEDLLIRADLGTAT 61

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A +IVE +   R+ K ++   V   ++  + ++L P++KPF  D   +P V+L+VGVNG 
Sbjct: 62  AARIVEAVGKGRHDKMIAPDEVKGLIASEVEEILGPVAKPFVPDAGQKPFVVLMVGVNGS 121

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ +    G ++ LAAGDTFR+AAI+QLK+W  RT A  V  E G+DAA +A
Sbjct: 122 GKTTTIGKLAAQWRSEGKRLTLAAGDTFRAAAIEQLKVWGARTGAHVVAREQGADAAGVA 181

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A  +A+A   D+++IDTAGRL N + LM  + K++RV+K+L+P APH+VL VLDAT G
Sbjct: 182 HDAITEARANGSDIVMIDTAGRLQNRTELMDELEKVVRVVKKLEPTAPHAVLLVLDATVG 241

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QVE+F   AG TGL+MTK+DGTARGG L+ I   +++P++ +GVGEG  DL+PF 
Sbjct: 242 QNALNQVEVFARTAGVTGLVMTKLDGTARGGILVAIAQKYRLPIHLVGVGEGAEDLQPFS 301

Query: 303 AKDFSAVITGC 313
           A+DFS  I G 
Sbjct: 302 ARDFSRAIAGL 312


>gi|24376059|ref|NP_720102.1| cell division protein FtsY [Shewanella oneidensis MR-1]
 gi|24351075|gb|AAN57546.1|AE015890_7 cell division protein FtsY [Shewanella oneidensis MR-1]
          Length = 510

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 128/311 (41%), Positives = 197/311 (63%), Gaps = 1/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
              +      S+  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV 
Sbjct: 193 PEPQAKPAKESFFARLKRGLMRTSENIGSGFIGLFRGKKIDDELFEELEEQLLIADVGVE 252

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              ++++ L      K +     LYD+  + + K L P++ P   + ++ P VIL+VGVN
Sbjct: 253 TTGRLIKSLTEHASRKQLKDAEALYDLLRDEMQKTLDPVAIPLVPENANGPFVILMVGVN 312

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A+
Sbjct: 313 GVGKTTTIGKLAKQYQRQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSAS 372

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+K+DVLI DTAGRL N S LM  + K++RV+K+LDP APH V+  LDA+
Sbjct: 373 VLFDALQAAKARKIDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDPEAPHEVMLTLDAS 432

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++F    G TG+ ++K+DGTA+GG +  I    KIP+ ++GVGE I+DL  
Sbjct: 433 TGQNAISQAQLFQEAVGVTGMTISKLDGTAKGGVVFAIADKFKIPLRYIGVGEQIDDLRT 492

Query: 301 FVAKDFSAVIT 311
           F +K+F   + 
Sbjct: 493 FNSKEFIDALF 503


>gi|77462389|ref|YP_351893.1| Signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides 2.4.1]
 gi|77386807|gb|ABA77992.1| signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides 2.4.1]
          Length = 393

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 128/278 (46%), Positives = 191/278 (68%), Gaps = 1/278 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E LE++LI++D+GV  A ++   +   RY + VS + +   ++  I ++L 
Sbjct: 117 RRILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSAREIKEALAAEIARILE 176

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P     S RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++Q
Sbjct: 177 PVARPMPLYPS-RPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQ 235

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W  R     + +  GSD A+LA++A  +AQA+  D+L+IDTAGRL N + LM  + K
Sbjct: 236 LQVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRADLMEELSK 295

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV+++ DP APH+ L VLDATTGQNAL QVE+F  +A  +GL+MTK+DGTA+GG L+ 
Sbjct: 296 IVRVIRKKDPDAPHNTLLVLDATTGQNALNQVEIFRKLADVSGLVMTKLDGTAKGGVLVA 355

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +     +P++ +GVGE I+DL PF  ++F+  + G  D
Sbjct: 356 LADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 393


>gi|295691524|ref|YP_003595217.1| signal recognition particle-docking protein FtsY [Caulobacter
           segnis ATCC 21756]
 gi|295433427|gb|ADG12599.1| signal recognition particle-docking protein FtsY [Caulobacter
           segnis ATCC 21756]
          Length = 313

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 135/309 (43%), Positives = 199/309 (64%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
             +   W ++LT G   TS  + E +T + + + LD    + LE++LI +D+G  +A +I
Sbjct: 5   PDQKKGWFQRLTSGLTRTSQAMTEQVTGVFTKKPLDQEQLDALEEMLIEADLGPEIAARI 64

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +     R+ K  +   V   ++ELI   L      F+     RP+V+L +GVNG GKTT
Sbjct: 65  TDAFGKARFGKSSTDDEVKEALAELIAAELADRQGDFDPLSGPRPYVVLFIGVNGSGKTT 124

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GK++  +++ G +V++AAGDTFR+AA++QLK+WADR  ADF+    GSDAA LAYEA 
Sbjct: 125 TLGKIAADLTEKGARVLIAAGDTFRAAAVEQLKVWADRAGADFMSKPTGSDAAGLAYEAV 184

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+A+  DV++IDTAGRL N   LM  + K+IRV+K++DP  PH  L VLDAT G+NAL
Sbjct: 185 ERAKAEHYDVVLIDTAGRLQNKQGLMDELLKVIRVVKKVDPDYPHETLLVLDATVGRNAL 244

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F    G +G++MTK+DGTARGG L+P+      P+  +GVGEG+ DL+PF A+ F
Sbjct: 245 AQEKIFGNQVGVSGIVMTKLDGTARGGVLVPVARASDSPIKLIGVGEGVEDLQPFDARAF 304

Query: 307 SAVITGCLD 315
           S  + G  D
Sbjct: 305 SRSLVGLKD 313


>gi|237747431|ref|ZP_04577911.1| signal recognition particle receptor [Oxalobacter formigenes
           HOxBLS]
 gi|229378782|gb|EEO28873.1| signal recognition particle receptor [Oxalobacter formigenes
           HOxBLS]
          Length = 354

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 124/306 (40%), Positives = 188/306 (61%), Gaps = 8/306 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
             +  SW+ +L  G A TS  L     +I     +D+ + EELE  LI SD+G+   + +
Sbjct: 55  EEKKQSWLSRLKAGLAKTSANL-----NIFGGTTIDEELFEELETALIVSDVGLPATEYL 109

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++ L  K   + ++    +  ++++L+  +L+PL K       H P ++++ GVNG GKT
Sbjct: 110 LDSLRKKVKEERLTHPAEIKTELAKLLTDLLIPLQKSLEIG-RHTPLIVMMAGVNGAGKT 168

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K + +    V+LAAGDTFR+AA +QL +W DR     +  E   D AA+A++A
Sbjct: 169 TTIGKLAKHLQNNDQTVLLAAGDTFRAAAREQLAVWGDRNKITVIAQE-SGDPAAVAFDA 227

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+AK ++V+++DTAGRL     LM  + K+ RV+ +    APH ++ V+D  TGQNA
Sbjct: 228 VQSAKAKGINVVMVDTAGRLPTQLHLMEELRKVKRVIGKGMEEAPHEIILVIDGNTGQNA 287

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGT +GG L  I   H +PVYF+GVGE I+DL+PFVA++
Sbjct: 288 LAQVKAFDEALGLTGLIVTKLDGTPKGGILAAIAKNHPVPVYFIGVGEKIDDLQPFVAEE 347

Query: 306 FSAVIT 311
           FS  + 
Sbjct: 348 FSNALL 353


>gi|91794852|ref|YP_564503.1| signal recognition particle-docking protein FtsY [Shewanella
           denitrificans OS217]
 gi|91716854|gb|ABE56780.1| signal recognition particle-docking protein FtsY [Shewanella
           denitrificans OS217]
          Length = 487

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 133/313 (42%), Positives = 196/313 (62%), Gaps = 1/313 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    K++ +
Sbjct: 163 KEGLFARLKRGLMRTSENIGSGFIGLFKGKKIDDDLFEELEEQLLIADVGVETTTKLIAK 222

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      + +     LYD+  + + KML P++ P   D S  P VIL+VGVNGVGKTT I
Sbjct: 223 LTEHASRRQLKDAEALYDLMRDEMQKMLEPVAIPLVPDNSEGPFVILMVGVNGVGKTTTI 282

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++ ++AF+ 
Sbjct: 283 GKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASVLFDAFQA 342

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+++KVDVLI DTAGRL N S LM  + K++RV+K+LD +APH V+  LDA+TGQNA+ Q
Sbjct: 343 AKSRKVDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDANAPHEVMLTLDASTGQNAISQ 402

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+ +TK+DGTA+GG +  I     IP+  +GVGE I+DL  F A DF  
Sbjct: 403 AQLFQEAVGVTGITLTKLDGTAKGGVIFAIADKFSIPIRHIGVGEQIDDLRTFNAADFID 462

Query: 309 VITGCLDYGEEKI 321
            +       +EK+
Sbjct: 463 ALFTQERVPQEKV 475


>gi|282910807|ref|ZP_06318610.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282325412|gb|EFB55721.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus WBG10049]
          Length = 416

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 127/322 (39%), Positives = 191/322 (59%), Gaps = 9/322 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPL---SKPFNWDFSHRPHVILVVG 118
              + EEL  +   +++     L +V  E I ++       S+  N +   R +VIL+VG
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLE-DGRLNVILMVG 193

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +    GSD 
Sbjct: 194 VNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDP 253

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  L  LD
Sbjct: 254 AAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +TTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE ++DL
Sbjct: 314 STTGQNALSQARNFKGVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDL 373

Query: 299 EPFVAKDFSAVITG-CLDYGEE 319
           +PF  + +   +    ++  EE
Sbjct: 374 QPFNPESYVYGLFADMIEQNEE 395


>gi|83589815|ref|YP_429824.1| signal recognition particle subunit FFH/SRP54 (srp54) [Moorella
           thermoacetica ATCC 39073]
 gi|83572729|gb|ABC19281.1| signal recognition particle subunit FFH/SRP54 (srp54) [Moorella
           thermoacetica ATCC 39073]
          Length = 447

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FAS + KL+E    +    +L +        E+   L+ +D+   V +  V  +  +   
Sbjct: 4   FASLADKLQETFKKLRGKGKLTEADVTAAMREIRLALLEADVNFKVVKDFVNRVKERAVG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V E +  ++       NW  S  P VI++ G+ G GKTT   KL
Sbjct: 64  QEVMQSLTPGQQVVKIVHEELTALMGGGESKINW-ASQPPTVIMLAGLQGAGKTTTAAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++   + G + +L A D +R AAI QL++  ++          GS    +A  A + A+ 
Sbjct: 123 ARLAQNQGRRPLLVAADVYRPAAIKQLQVLGEQLKVPVFSMGEGSSPVDIARAAVEHART 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              + +I+DTAGRLH N  +MA +  +   +       P  +L V+DA TGQ+A++    
Sbjct: 183 HGSNPVILDTAGRLHINETMMAELAAIKEAV------RPQEILLVVDAMTGQDAVQVAST 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG+I+TK+DG  RGG  + I      P+ F+G+GE    LE F     ++ I 
Sbjct: 237 FHQQLGLTGVILTKLDGDTRGGAALSIRAVTGCPIKFIGMGEKTEALETFHPDRLASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|134299913|ref|YP_001113409.1| signal recognition particle-docking protein FtsY [Desulfotomaculum
           reducens MI-1]
 gi|134052613|gb|ABO50584.1| signal recognition particle-docking protein FtsY [Desulfotomaculum
           reducens MI-1]
          Length = 309

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 134/304 (44%), Positives = 194/304 (63%), Gaps = 3/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +    T     E I  +++ R  +D+ + EELE++LI++D+GV+ A K+VE 
Sbjct: 1   MGFFDRLKESLTKTRQSFIEKIDQVVTGRTGIDEDLYEELEEVLIQADVGVSTAMKLVER 60

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +     A++V     L ++  E +  ++     P   +    P VI+VVGVNGVGKTT I
Sbjct: 61  VRKGVKARNVQEASRLKEIFQEELEYLMGEKITPIQLNPEG-PTVIMVVGVNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++    + G KV+LAAGDTFR+AAIDQL+IWADR   D +  + GSD  A+AY+A   
Sbjct: 120 GKMAHNFKEQGKKVLLAAGDTFRAAAIDQLEIWADRVGVDIIKHQEGSDPGAVAYDAVHA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+++K D+L++DTAGRLHN S LM  + K+ +++ R  P APH VL VLDATTGQNAL Q
Sbjct: 180 ARSRKADILLVDTAGRLHNKSNLMDELRKVHKIVAREMPGAPHEVLLVLDATTGQNALNQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V++F      TG+ +TK+DGTA+GG +  IV    IPV  +G+GE ++DL PF  KDF  
Sbjct: 240 VKIFSEAVNVTGIALTKLDGTAKGGVVTSIVTEMAIPVKLIGIGERMDDLRPFNPKDFIN 299

Query: 309 VITG 312
            + G
Sbjct: 300 ALYG 303


>gi|56707294|ref|YP_169190.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110669764|ref|YP_666321.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis FSC198]
 gi|254369976|ref|ZP_04985984.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254874132|ref|ZP_05246842.1| signal recognition particle receptor ftsY [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|56603786|emb|CAG44753.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320097|emb|CAL08136.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151568222|gb|EDN33876.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254840131|gb|EET18567.1| signal recognition particle receptor ftsY [Francisella tularensis
           subsp. tularensis MA00-2987]
          Length = 343

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 192/313 (61%), Gaps = 2/313 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           +          +L  G + T+ K   G++ I+   + +D+ + E++E  L+ +D+GV   
Sbjct: 31  QEQDNKKGLFSRLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEAT 90

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +IV  L  K    ++     L   + + + ++++P  KP   D    P VILVVGVNGV
Sbjct: 91  DEIVTYLRDKVARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGV 150

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ 
Sbjct: 151 GKTTTIGKLTKKLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSASVI 210

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A++K +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG
Sbjct: 211 YDAIGSAKSKGIDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTG 270

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            NAL Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F 
Sbjct: 271 GNALNQAEAFNQIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFN 330

Query: 303 AKDFSAVITGCLD 315
           A+DF+  +    D
Sbjct: 331 ARDFTTALFNSND 343


>gi|260581582|ref|ZP_05849379.1| signal recognition particle-docking protein FtsY [Haemophilus
           influenzae NT127]
 gi|260095175|gb|EEW79066.1| signal recognition particle-docking protein FtsY [Haemophilus
           influenzae NT127]
          Length = 414

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 109 GFFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 168

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 169 EHASRKELQDAELLYQQLKVEMADILEPVAQPLKIDSTKKPYVILMVGVNGVGKTTTIGK 228

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 229 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 288

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 289 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 348

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 349 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 408

Query: 311 T 311
            
Sbjct: 409 F 409


>gi|304404218|ref|ZP_07385880.1| signal recognition particle-docking protein FtsY [Paenibacillus
           curdlanolyticus YK9]
 gi|304347196|gb|EFM13028.1| signal recognition particle-docking protein FtsY [Paenibacillus
           curdlanolyticus YK9]
          Length = 331

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 128/321 (39%), Positives = 196/321 (61%), Gaps = 3/321 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVA 61
            + +AS++ +       G A T   + E + ++I+  +++D+   EELE++LI +D+GV 
Sbjct: 8   KETIASKTEAVTNIFKDGLAKTRTAIVEKVEELITRRKKIDEAFFEELEEILIGADVGVN 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              +++++L  +  A+ +     L  V SE + ++L  +  P          VIL VGVN
Sbjct: 68  TVMQLIDDLRAEVKARKIEDASDLQPVLSEKLVEILKGVDDPELHMAESGMTVILFVGVN 127

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W  R   D +    G+D AA
Sbjct: 128 GVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGQRVGVDVIKQSAGADPAA 187

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A + A+ + VDVL+ DTAGRL N + LM  + K+ RV++R  P APH VL VLDAT
Sbjct: 188 VMYDAVQAAKQRSVDVLLCDTAGRLQNKTNLMDELNKIFRVIQREVPTAPHEVLLVLDAT 247

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q ++F   +G TGL++TK+DGTA+GG +I I     +PV  +G+GE ++DL+ 
Sbjct: 248 TGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIIIAIRNELNLPVKLVGLGEKMDDLQQ 307

Query: 301 FVAKDFSAVIT-GCLDYGEEK 320
           F +  F   +  G +   +E+
Sbjct: 308 FDSDQFVHALFAGLIQKKDEE 328


>gi|254785308|ref|YP_003072737.1| signal recognition particle protein [Teredinibacter turnerae T7901]
 gi|237684927|gb|ACR12191.1| signal recognition particle protein [Teredinibacter turnerae T7901]
          Length = 523

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 101/335 (30%), Positives = 170/335 (50%), Gaps = 24/335 (7%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLD-DGVREELED---LLIRSDI 58
           +Q  A+E+L   R+    F + S +L   +  I    RL+ D +++ L D    L+ +D+
Sbjct: 40  SQHRATENLHRNRQF-AMFDNLSDRLTRSLKKITGKSRLNHDNIQDALRDVRKALLEADV 98

Query: 59  GVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
            + V +  +  +  +   ++VS      Q+ L  V   + +++   ++  N   +  P V
Sbjct: 99  ALPVVKDFINHVRKRAQGQEVSRALNPGQQFLKIVESELTELMGAANESLNL-ATQPPAV 157

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +L+ G+ G GKTT + KL++ + +    KVM+ + D +R AAI QL+  A    A+F  S
Sbjct: 158 VLMAGLQGAGKTTTVAKLARFLQEKHKKKVMVVSADVYRPAAIKQLETLAAEVEAEFFPS 217

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                  A+A  A +QA+   +DVL++DTAGRLH +  LMA I  + + +       P  
Sbjct: 218 SSDQQPVAIAKAAIEQAKKSHMDVLLVDTAGRLHIDEQLMAEIQGLHKAVN------PVE 271

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L V+D+  GQ+A+   + F+     TG+++TK DG ARGG  + +      P+ F+GVG
Sbjct: 272 TLFVIDSMIGQDAVNTAKAFNDALPLTGVVLTKTDGDARGGAALSVRHITGKPIKFMGVG 331

Query: 293 EGINDLEPFVAKDFSAVITGCLDY------GEEKI 321
           E    LEPF  +  ++ I G  D        E+KI
Sbjct: 332 EKTEALEPFHPERVASRILGMGDIMSLIEEAEQKI 366


>gi|262375215|ref|ZP_06068448.1| signal recognition particle-docking protein FtsY [Acinetobacter
           lwoffii SH145]
 gi|262309469|gb|EEY90599.1| signal recognition particle-docking protein FtsY [Acinetobacter
           lwoffii SH145]
          Length = 367

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 139/312 (44%), Positives = 199/312 (63%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
           +  + ++    +  ++  G   T   L +G+ +I I  + +DD + EE+E+ L+ +DIGV
Sbjct: 52  TENEDSAAKGGFFSRMKVGLTKTRKNLADGMVNILIGGKEIDDELLEEVEEQLLVADIGV 111

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + I+  L  +    D+     LY  + E +  +L P  KP + D +  P+VILVVGV
Sbjct: 112 EATKTIIANLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILVVGV 171

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+K++   G  VMLAAGDTFR+AA +QL+IW +R +   V    G+D+A
Sbjct: 172 NGVGKTTTIGKLAKRLQGEGKTVMLAAGDTFRAAATEQLQIWGERNNIAVVAQGHGADSA 231

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++AF+ A+AK VDVLI DTAGRLHN   LM  + K+ RV++++D  APH V+ V+DA
Sbjct: 232 SVIFDAFESARAKGVDVLIADTAGRLHNKGHLMQELTKVKRVMQKIDATAPHEVMLVVDA 291

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ QVEMF    G TGL +TK+DGTA+GG L  I     +P+ F+GVGE I+DL 
Sbjct: 292 GTGQNAINQVEMFDEAVGLTGLTITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLR 351

Query: 300 PFVAKDFSAVIT 311
           PF AK F A + 
Sbjct: 352 PFSAKSFVAALF 363


>gi|218710918|ref|YP_002418539.1| cell division protein FtxY [Vibrio splendidus LGP32]
 gi|218323937|emb|CAV20299.1| Cell division protein ftsY [Vibrio splendidus LGP32]
          Length = 422

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 197/310 (63%), Gaps = 1/310 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            +     + S+  +L +  + T   +  G   +   +++D+ + EELE+ L+ +D+G+  
Sbjct: 109 EEVQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKQIDEDLFEELEEQLLIADVGMNT 168

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             KI+E L  K    D+     LY  + E + ++L  + +P   D +  P+VIL+VGVNG
Sbjct: 169 TVKIIENLTEKASRNDLKDGEALYGLLKEEMSEILSQVEQPLVVDTTKTPYVILMVGVNG 228

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W  R     +    G+D+A++
Sbjct: 229 VGKTTTIGKLAKQFQSEGKKVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASV 288

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A + A+A+ VDV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA T
Sbjct: 289 IYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGT 348

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PF
Sbjct: 349 GQNAISQAKLFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRYIGVGEGIDDLRPF 408

Query: 302 VAKDFSAVIT 311
            +KDF   + 
Sbjct: 409 ESKDFIEALF 418


>gi|294138984|ref|YP_003554962.1| cell division protein FtsY [Shewanella violacea DSS12]
 gi|293325453|dbj|BAJ00184.1| cell division protein FtsY [Shewanella violacea DSS12]
          Length = 743

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 128/311 (41%), Positives = 191/311 (61%), Gaps = 1/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
              +       +  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+G+ 
Sbjct: 425 PEPQAKPAKEGFFARLKRGLKRTSENIGSGFVGLFKGKKIDDDLFEELEEQLLIADVGIE 484

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              ++++ L  +   K +     LY++  E + K L P+S P   D +  P VIL+VGVN
Sbjct: 485 TTTRLIDSLTEQASRKQLKDGEALYELLREEMQKTLDPVSIPLVPDNADGPFVILMVGVN 544

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A+
Sbjct: 545 GVGKTTTIGKLAKQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSAS 604

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+KVDVLI DTAGRL N + LM  + K++RV+K+LD +APH V+  LDA 
Sbjct: 605 VVFDALQAARARKVDVLIADTAGRLQNKAHLMDELKKIVRVMKKLDENAPHEVMLTLDAG 664

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q E F    G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  
Sbjct: 665 TGQNAISQAEFFKKDVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRT 724

Query: 301 FVAKDFSAVIT 311
           F AKDF   + 
Sbjct: 725 FDAKDFIDALF 735


>gi|118498159|ref|YP_899209.1| cell division protein, signal recognition particle GTPase
           [Francisella tularensis subsp. novicida U112]
 gi|118424065|gb|ABK90455.1| cell division protein, signal recognition particle GTPase
           [Francisella novicida U112]
          Length = 331

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 192/313 (61%), Gaps = 2/313 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           +          +L  G + T+ K   G++ I+   + +D+ + E++E  L+ +D+GV   
Sbjct: 19  QEQDNKKGLFSRLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEAT 78

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +IV  L  K    ++     L   + + + ++++P  KP   D    P VILVVGVNGV
Sbjct: 79  DEIVAYLRDKVARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGV 138

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W +R +   V    G+D+A++ 
Sbjct: 139 GKTTTIGKLTKKLQSQGKSVILAAGDTFRAAAVEQLREWGNRNNTHVVYQHEGADSASVI 198

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A++K +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG
Sbjct: 199 YDAISSAKSKGIDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTG 258

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            NAL Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F 
Sbjct: 259 GNALSQAEAFNQIVNLTGITITKLDGTAKGGIVFSIAKKLSLPLRFIGVGEKIDDLQVFN 318

Query: 303 AKDFSAVITGCLD 315
           A+DF+  +    D
Sbjct: 319 ARDFTTALFNSND 331


>gi|262372507|ref|ZP_06065786.1| signal recognition particle-docking protein FtsY [Acinetobacter
           junii SH205]
 gi|262312532|gb|EEY93617.1| signal recognition particle-docking protein FtsY [Acinetobacter
           junii SH205]
          Length = 379

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 132/306 (43%), Positives = 197/306 (64%), Gaps = 2/306 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           ++S  +  ++  G   T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I
Sbjct: 70  TKSTGFFGRMKDGLIKTRRSFTDGMVNILIGGKEIDDELLEEVEEQLLIADIGVEATKTI 129

Query: 67  VEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +  L  +    D+     LY V  E +  +L P  KP + D +  P+VIL+VGVNGVGKT
Sbjct: 130 IANLTERTARGDLIYSHALYKVLQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKT 189

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K++   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++A
Sbjct: 190 TTIGKLAKRLQAEGKKVMLAAGDTFRAAATEQLQIWGERNDIPVVAQGHGADSASVIFDA 249

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           F+ A+AK +DVLI DTAGRL N S LM  + K+ RV++++D  APH ++ ++DA TGQNA
Sbjct: 250 FESARAKGIDVLIADTAGRLQNKSNLMEELKKVKRVMQKIDATAPHEIMLIVDAGTGQNA 309

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV++F    G TG+ +TK+DGTA+GG L  I     +P+ ++G+GE I+DL PF AK 
Sbjct: 310 INQVQLFDEAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRYIGIGEKIDDLRPFSAKS 369

Query: 306 FSAVIT 311
           F A + 
Sbjct: 370 FVAALF 375


>gi|259910113|ref|YP_002650469.1| Cell division protein [Erwinia pyrifoliae Ep1/96]
 gi|224965735|emb|CAX57267.1| Cell division protein [Erwinia pyrifoliae Ep1/96]
 gi|283480210|emb|CAY76126.1| Cell division protein ftsY homolog [Erwinia pyrifoliae DSM 12163]
          Length = 488

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 124/315 (39%), Positives = 192/315 (60%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV 
Sbjct: 175 AKEQERPSKEGFFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVE 234

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             ++I+  L  +   K +     LY + +  + ++L  +  P +      P VIL+VGVN
Sbjct: 235 TTRRIIGNLTNQASRKQLRDAEALYGLLKTDMAEILAKVEAPLDIS-GKTPFVILMVGVN 293

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A+
Sbjct: 294 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSAS 353

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ VDVLI DTAGRL N + LM  + K+ RV+K+LD  APH V+  +DA+
Sbjct: 354 VIFDAIQAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDAS 413

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI+DL P
Sbjct: 414 TGQNAISQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADLFTIPIRYIGVGEGIDDLRP 473

Query: 301 FVAKDFSAVITGCLD 315
           F A DF   +    D
Sbjct: 474 FKADDFIEALFARED 488


>gi|320353172|ref|YP_004194511.1| signal recognition particle-docking protein FtsY [Desulfobulbus
           propionicus DSM 2032]
 gi|320121674|gb|ADW17220.1| signal recognition particle-docking protein FtsY [Desulfobulbus
           propionicus DSM 2032]
          Length = 592

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 117/311 (37%), Positives = 183/311 (58%), Gaps = 5/311 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAV 62
           QK A++SL   ++L +    T       +  +    + +D  + E+LE++LI +D+GVA 
Sbjct: 278 QKPANKSL--FKRLQERLGKTRDAFIYRLDSLFLGKKEIDQDLFEQLEEILITADLGVAT 335

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVN 120
             ++++    K     +S  + L   + + I   +    +P         P VI+VVGVN
Sbjct: 336 TLELIDGARKKVKRDQLSDPQALKAIIRDQILAYIEASEQPAELVMPEEGPFVIMVVGVN 395

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++ K   AG  V+L AGDTFR+AAI+QL+IW +R   + +  + G+D ++
Sbjct: 396 GVGKTTTIGKIAAKFVRAGQSVLLVAGDTFRAAAINQLRIWGERVGVEVIAQKPGADPSS 455

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++  +   +   DV++IDTAGRLH +  LM  + K+ RV+ +  P APH V+ VLDAT
Sbjct: 456 VVFDGLEYGTSHNYDVILIDTAGRLHTSVNLMEELKKIKRVIGKKLPGAPHEVMLVLDAT 515

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN + Q ++FH   G TGL +TK+DGTA+GG +  +    K PV F+G+GE I+DL  
Sbjct: 516 TGQNGISQAKLFHEAVGVTGLTLTKLDGTAKGGIVANVCRETKTPVRFIGIGEQIDDLRD 575

Query: 301 FVAKDFSAVIT 311
           F A++F   + 
Sbjct: 576 FDAREFVEALF 586


>gi|221133909|ref|ZP_03560214.1| signal recognition particle GTPase [Glaciecola sp. HTCC2999]
          Length = 367

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 186/303 (61%), Gaps = 4/303 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +   L    + T   +  GI D+   R +DD + E+LE  L+ +D+G+   Q I+E L  
Sbjct: 61  FFSSLAAKLSRTKESIGSGIADLFVGRSIDDELYEDLETQLLVADVGMDTTQNIIEHLTQ 120

Query: 73  KRYAKDVS-VQRVLYDVSELIHKMLMPLSKPF---NWDFSHRPHVILVVGVNGVGKTTVI 128
                 +   + +L ++   + ++L  +  P      +    P VIL+VGVNGVGKTT I
Sbjct: 121 STKRSTLKNGEALLGELKAYMGELLTNIEAPLIPVVPEGKKGPFVILMVGVNGVGKTTTI 180

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++K+    G KVMLAAGDTFR+AA++QL++W +R     V    G+D+A++ Y+A + 
Sbjct: 181 GKMAKQFQQDGKKVMLAAGDTFRAAAVEQLQVWGERNDIPVVAQHTGADSASVLYDAIQS 240

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           AQAK +DVLI DTAGRL N   LM  + K++RV+++++P APH ++  +DA TGQNA+ Q
Sbjct: 241 AQAKNIDVLIADTAGRLQNKDYLMQELEKVVRVIRKINPDAPHEIMLTIDAGTGQNAISQ 300

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++FH   G TG+ ++K+DGTA+GG +  I     IPV ++GVGE I+DL PF A +F  
Sbjct: 301 AKLFHDAVGLTGITLSKLDGTAKGGVIFSIADQFSIPVRYIGVGEAIDDLRPFQATEFID 360

Query: 309 VIT 311
            + 
Sbjct: 361 ALF 363


>gi|68249364|ref|YP_248476.1| cell division protein FtsY [Haemophilus influenzae 86-028NP]
 gi|68057563|gb|AAX87816.1| cell division protein FtsY [Haemophilus influenzae 86-028NP]
          Length = 414

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 126/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KIV+ L 
Sbjct: 109 GFFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIVKNLT 168

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 169 EHASRKELQDAELLYQQLKVEMADILEPVARPLEIDSTKKPYVILMVGVNGVGKTTTIGK 228

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 229 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 288

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 289 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 348

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 349 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 408

Query: 311 T 311
            
Sbjct: 409 F 409


>gi|242240277|ref|YP_002988458.1| signal recognition particle protein [Dickeya dadantii Ech703]
 gi|242132334|gb|ACS86636.1| signal recognition particle protein [Dickeya dadantii Ech703]
          Length = 453

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL D        E+   L+ +D+ + V ++ +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVREFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HDVNKSLTPGQEFVRIVQNELVAAMGEENQALNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +      KV++ + D +R AAI QL+  A+    DF  S++      +  +A + A+
Sbjct: 121 GKFLREKQKKKVLVVSADVYRPAAIRQLETLAESVGVDFFPSDVSEKPVNIVGQALQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDDAMMDEIRQVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|207727827|ref|YP_002256221.1| cell division protein [Ralstonia solanacearum MolK2]
 gi|206591068|emb|CAQ56680.1| cell division protein [Ralstonia solanacearum MolK2]
          Length = 381

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 178/308 (57%), Gaps = 7/308 (2%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +      W+ +L  G + TS  L    T +    ++D+ + EELE  L+ +D GV   + 
Sbjct: 80  MEQARKGWMSRLRSGLSKTSKSL----TTLFVGVKVDETLFEELETALLMADAGVDATEY 135

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++EL  +   + +     +   + +L+ ++L PL K         P VI++ GVNG GK
Sbjct: 136 LLDELRRRVKTQRIETAESVKTALRDLLVELLHPLEKTMVLGRDQ-PMVIMIAGVNGAGK 194

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL K     G  V+LAAGDTFR+AA +QL IW  R +   V  E   D AA+ ++
Sbjct: 195 TTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQE-SGDPAAVIFD 253

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+A+ +D+++ DTAGRL     LM  + K+ RV+ +    APH  L V+DA TGQN
Sbjct: 254 AVNAARARGIDIVMADTAGRLPTQMHLMEELKKVRRVIGKAMVTAPHETLLVIDANTGQN 313

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A+
Sbjct: 314 ALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAR 373

Query: 305 DFSAVITG 312
           +F+  + G
Sbjct: 374 EFADALLG 381


>gi|170691511|ref|ZP_02882676.1| signal recognition particle-docking protein FtsY [Burkholderia
           graminis C4D1M]
 gi|170143716|gb|EDT11879.1| signal recognition particle-docking protein FtsY [Burkholderia
           graminis C4D1M]
          Length = 395

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 131/307 (42%), Positives = 184/307 (59%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            S   SW+ +L  G + TS      IT I    ++D+ + EELE  L+ SD GV   + +
Sbjct: 94  ESAKRSWLTRLKTGLSKTS----SSITGIFVGAKIDEDLYEELETALLMSDAGVDATEFL 149

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E L  K  A+ ++  + +   +  L+  +L PL K      + +P V+++ GVNG GKT
Sbjct: 150 LEALREKVRAERLTEPQQVKAALRTLLVDLLKPLEKSLMLGRA-KPLVMMIAGVNGAGKT 208

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL IW  R +   V  E   D AA+ ++A
Sbjct: 209 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVAQE-SGDPAAVIFDA 267

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 268 VGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNA 327

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++
Sbjct: 328 LAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEE 387

Query: 306 FSAVITG 312
           FS  + G
Sbjct: 388 FSDALLG 394


>gi|291522193|emb|CBK80486.1| signal recognition particle protein [Coprococcus catus GD/7]
          Length = 447

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 151/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++ S  RL +       +E++  L+ +D+   V ++ +  +  +  
Sbjct: 2   AFESLSDKLQNVFKNLRSKGRLTEADVKASLKEVKMALLEADVNFKVVKQFINSVTERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +     + S+   VI++ G+ G GKTT   K
Sbjct: 62  GQDVMNSLTPGQMVIKIVNEEMVALMGSETTEIKLNNSNELTVIMMAGLQGAGKTTTSAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G K +L A D +R AAI QL++  ++            +   +A  A + A+
Sbjct: 122 IAGKLKAKGRKPLLVACDVYRPAAIKQLQVNGEKQGVPVFSMGDHQNPVDIAKAAIEHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++V+I+DTAGRLH +  +M  +  + + +K          + V+DA TGQ+A+   +
Sbjct: 182 NNDLNVVILDTAGRLHVDETMMEELANIQKAIK------VDQTIFVVDAMTGQDAVNVAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+I+TKMDG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 SFNEQIELDGVILTKMDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|325143074|gb|EGC65423.1| SRP54-type protein, GTPase domain protein [Neisseria meningitidis
           961-5945]
          Length = 303

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT  GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVA-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|85859850|ref|YP_462052.1| cell division protein ftsY [Syntrophus aciditrophicus SB]
 gi|85722941|gb|ABC77884.1| cell division protein ftsY [Syntrophus aciditrophicus SB]
          Length = 330

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 118/310 (38%), Positives = 184/310 (59%), Gaps = 1/310 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +   +  KL +G A T   L   + DII   + +D  + +ELE+ LI +D+G A   ++
Sbjct: 21  QKKQGFFDKLKRGLAKTRDLLLTDVDDIILGKKEIDQELFDELEEALIAADVGPAFTSEL 80

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E++      K++     L +V     K L+  ++        +   ILVVGVNG GKTT
Sbjct: 81  IEKMTDSVKRKELDSPERLKEVLRSTMKTLLKKNEAPLVIPEKQIFTILVVGVNGTGKTT 140

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ +  + G  V + A DTFR+AAI+QL+IW+ R     +  +  SD +A+ ++A 
Sbjct: 141 TIGKLANQFKEEGRTVAMVAADTFRAAAIEQLEIWSQRVGVPLIKQKQDSDPSAVVFDAI 200

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A++ K +VLIIDTAGRLH    LM  + KM R++ R  P APH VL VLDATTGQNA+
Sbjct: 201 TAAKSGKAEVLIIDTAGRLHTQVNLMEEMKKMKRIMGRELPGAPHEVLLVLDATTGQNAV 260

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q +MF    G TG+++TK+DGT++GG ++ I   + IP+ ++G+GEG++DL  F +++F
Sbjct: 261 NQAKMFTDAVGVTGIVLTKLDGTSKGGVILRIAQEYNIPIRYIGIGEGLDDLREFNSEEF 320

Query: 307 SAVITGCLDY 316
              +    ++
Sbjct: 321 VEALFEQGNH 330


>gi|16272709|ref|NP_438927.1| cell division protein FtsY [Haemophilus influenzae Rd KW20]
 gi|260579859|ref|ZP_05847689.1| signal recognition particle-docking protein FtsY [Haemophilus
           influenzae RdAW]
 gi|1169764|sp|P44870|FTSY_HAEIN RecName: Full=Cell division protein ftsY homolog
 gi|1573776|gb|AAC22426.1| cell division protein (ftsY) [Haemophilus influenzae Rd KW20]
 gi|260093143|gb|EEW77076.1| signal recognition particle-docking protein FtsY [Haemophilus
           influenzae RdAW]
          Length = 414

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 109 GFFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 168

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 169 EHASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGK 228

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 229 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 288

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 289 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 348

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 349 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 408

Query: 311 T 311
            
Sbjct: 409 F 409


>gi|311696381|gb|ADP99254.1| signal recognition particle-docking protein FtsY [marine bacterium
           HP15]
          Length = 397

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 125/307 (40%), Positives = 193/307 (62%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQK 65
               +S   ++ KG   T   L  G++D+ S  +++D+ + EE+E  L+ +D+GV    +
Sbjct: 89  PEPQVSVFERIKKGLGKTRASLTGGLSDMFSLGKKIDEELLEEIETTLLMADVGVTATSE 148

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ L  K     +     L   + + +H +L  ++KP   D    P+VIL+VGVNGVGK
Sbjct: 149 IIDSLTDKLERNQLKDGEALRKALRDELHGLLKDVTKPLQIDSGKTPYVILMVGVNGVGK 208

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+KK  + G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++
Sbjct: 209 TTTIGKLTKKFQNEGKSVMLAAGDTFRAAAVEQLQVWGERNKVPVVAQHTGADSASVIFD 268

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+++ VDV+I DTAGRL N   LM  + K++RV+K+LD  APH V+ VLDA TGQN
Sbjct: 269 AIQSAKSRGVDVVIADTAGRLQNKDNLMQELEKVVRVMKKLDESAPHEVMLVLDAGTGQN 328

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q ++F    G +G+ +TK+DGTA+GG +  I    ++P+ F+GVGE ++DL  F A+
Sbjct: 329 ALSQAQVFQQAVGVSGITLTKLDGTAKGGIVFAIARQLQLPIRFIGVGEQVDDLRSFDAE 388

Query: 305 DFSAVIT 311
            F   + 
Sbjct: 389 TFVDALF 395


>gi|242280173|ref|YP_002992302.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           salexigens DSM 2638]
 gi|242123067|gb|ACS80763.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           salexigens DSM 2638]
          Length = 675

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 121/300 (40%), Positives = 180/300 (60%), Gaps = 5/300 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             KL++G   T  ++ + I  ++SS    DD   EE E++LI +D+G   + ++VE +  
Sbjct: 377 FIKLSEGLNKTREQITKRIDSMLSSHTAFDDDFWEEFEEILIMADVGYDASMELVERMKE 436

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +      +      D   L+ + L  + K P      + P V++++GVNGVGKTT I KL
Sbjct: 437 RIRKAGETNPENFKD---LLREELDEIFKVPKRIKAFNPPEVVMMIGVNGVGKTTTIAKL 493

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KV++ AGDTFR+AAI QL++WA R  A F     GSD AA+AYEA   A  
Sbjct: 494 AHRAQMQGRKVLIVAGDTFRAAAIGQLEVWARRVGAGFYAKAEGSDPAAVAYEAIDYAVK 553

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++++DTAGRLHN + LM  + K+ RVL +    APH  + V+DATTGQNAL Q ++
Sbjct: 554 NGYDLMLLDTAGRLHNKANLMEELHKIRRVLGKKHDEAPHRSVLVIDATTGQNALSQTKI 613

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G   LI+TK+DGTA+GG +I + + HKIP+  +G+GE + DL PF  +DF+  + 
Sbjct: 614 FNEEIGVDELILTKLDGTAKGGVMIAVTMQHKIPITHIGLGEKMEDLRPFNGEDFAKALL 673


>gi|299068055|emb|CBJ39269.1| Signal recognition particle (SRP) GTPase [Ralstonia solanacearum
           CMR15]
          Length = 328

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 177/308 (57%), Gaps = 7/308 (2%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V      W+ +L  G + TS  L    T +    ++D+ + EELE  L+ +D GV   + 
Sbjct: 27  VEQARKGWMSRLRSGLSKTSKSL----TTLFVGVKVDEALFEELETALLMADAGVDATEY 82

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++ EL  +   + +     +   + +L+ ++L PL K         P VI++ GVNG GK
Sbjct: 83  LLNELRRRVKTQRIETAEGVKTALRDLLIELLHPLEKTMVLGRDQ-PTVIMIAGVNGAGK 141

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL K     G  V+LAAGDTFR+AA +QL IW  R +   V  E   D AA+ ++
Sbjct: 142 TTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQE-SGDPAAVIFD 200

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+A+ +D+++ DTAGRL     LM  + K+ RV+ +    APH  L V+DA TGQN
Sbjct: 201 AVNAARARGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQN 260

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A+
Sbjct: 261 ALAQVKAFDDTLGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAR 320

Query: 305 DFSAVITG 312
           +F+  + G
Sbjct: 321 EFADALLG 328


>gi|221633792|ref|YP_002523018.1| signal recognition particle-docking protein FtsY [Thermomicrobium
           roseum DSM 5159]
 gi|221157064|gb|ACM06191.1| signal recognition particle-docking protein FtsY [Thermomicrobium
           roseum DSM 5159]
          Length = 320

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 115/318 (36%), Positives = 171/318 (53%), Gaps = 14/318 (4%)

Query: 13  WIRK-------LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           + R+       L  G   +   +   I  +    ++D  + ++LE LLI++D+GVA  + 
Sbjct: 6   FFRRRTPPSPQLESGLKRSRQGIFRQIVQLFERSQIDRELFDDLEALLIQADLGVATTEA 65

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGV 122
           ++E L  +    +V       + + E +  +L    +        R  P V LVVGVNG 
Sbjct: 66  LLERLQERVRRGEVRDPVEAREALREEMVALLEAAMRNRRVKIYQRGVPFVSLVVGVNGT 125

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I KL++   D G  V+L A DTFR+AAIDQLK W +R     +    G+D  A+ 
Sbjct: 126 GKTTTIAKLARYHLDQGRTVLLVAADTFRAAAIDQLKAWGERLGVPVIAHAPGADPGAVV 185

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++  + A  + +DVL+IDTAGRLH  S LMA + K+ RV++R  P APH VL V+DATTG
Sbjct: 186 FDGMQAAHNRGIDVLLIDTAGRLHTKSNLMAELAKIRRVIQRHVPDAPHEVLLVIDATTG 245

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN L Q  +F   AG T + +TK+DGTA+GG    I     IP+ ++G GE   D   F 
Sbjct: 246 QNGLNQARVFTEAAGVTDIALTKLDGTAKGGIAFAIARELGIPIAYVGTGEKPTDFAEFD 305

Query: 303 AKDFSAVITGCLDYGEEK 320
            + +   +     +G+E+
Sbjct: 306 PEAYVDALF----FGDEE 319


>gi|145634821|ref|ZP_01790529.1| cell division protein [Haemophilus influenzae PittAA]
 gi|145267987|gb|EDK07983.1| cell division protein [Haemophilus influenzae PittAA]
          Length = 410

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 105 GFFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 164

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 165 EHASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGK 224

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 225 LARKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVSQSTGSDSASVIFDAMQSAA 284

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 285 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 344

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 345 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 404

Query: 311 T 311
            
Sbjct: 405 F 405


>gi|167835367|ref|ZP_02462250.1| signal recognition particle-docking protein FtsY [Burkholderia
           thailandensis MSMB43]
          Length = 327

 Score =  299 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 182/304 (59%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD G+   + ++  
Sbjct: 30  KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGIDATEHLLGA 85

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K     ++  + + D +  L+  +L PL K      +  P V+++ GVNG GKTT I
Sbjct: 86  LREKVRTGRLTDPQQVKDALRGLLVDLLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 144

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 145 GKLAKHLQSFNQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 203

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 204 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 263

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++F+ 
Sbjct: 264 VKAFDDTLGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFAD 323

Query: 309 VITG 312
            + G
Sbjct: 324 ALLG 327


>gi|157373360|ref|YP_001471960.1| signal recognition particle-docking protein FtsY [Shewanella
           sediminis HAW-EB3]
 gi|157315734|gb|ABV34832.1| signal recognition particle-docking protein FtsY [Shewanella
           sediminis HAW-EB3]
          Length = 540

 Score =  299 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 128/311 (41%), Positives = 192/311 (61%), Gaps = 3/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             +K   E   +  +L +G   TS  +  G   + S +++DD + EELE+ L+ +D+GV 
Sbjct: 223 PQEKPTKE--GFFARLKRGLKRTSENIGSGFVSLFSGKKIDDDLFEELEEQLLIADVGVE 280

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              ++++ L  +   K +     LY  + + + K L P+S P   + +  P VIL+VGVN
Sbjct: 281 TTTRLIDSLTEQASRKQLKDGEALYEILRDEMQKTLEPVSIPLVPESADGPFVILMVGVN 340

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A+
Sbjct: 341 GVGKTTTIGKLAKQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVVAQHTGADSAS 400

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ +D+LI DTAGRL N + LM  + K+IRV+K+ D  APH V+  LDA+
Sbjct: 401 VLFDALQAARARNIDILIADTAGRLQNKAHLMDELKKVIRVMKKQDESAPHEVMLTLDAS 460

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q E+F    G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  
Sbjct: 461 TGQNAISQAELFKKAVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRT 520

Query: 301 FVAKDFSAVIT 311
           F AKDF   + 
Sbjct: 521 FDAKDFVDALF 531


>gi|16127909|ref|NP_422473.1| signal recognition particle-docking protein FtsY [Caulobacter
           crescentus CB15]
 gi|221236729|ref|YP_002519166.1| cell division protein FtsY [Caulobacter crescentus NA1000]
 gi|13425439|gb|AAK25641.1| signal recognition particle-docking protein FtsY [Caulobacter
           crescentus CB15]
 gi|220965902|gb|ACL97258.1| cell division protein ftsY [Caulobacter crescentus NA1000]
          Length = 313

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 136/309 (44%), Positives = 201/309 (65%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
             +   W ++LT G   +S  + E +T + + + LD    + LE++LI +D+G  +A +I
Sbjct: 5   PEQKKGWFQRLTSGLTRSSQAMTEQVTGVFTKKALDQEQLDALEEMLIEADLGPQIAARI 64

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            E     R+ K  +   V   ++ELI   L      F+     RP+V+L +GVNG GKTT
Sbjct: 65  TEAFGKARFGKSSTDDEVKEALAELIAAELADRQGDFDPLNGPRPYVVLFIGVNGSGKTT 124

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GK++  +++ G +V++AAGDTFR+AA++QLK+WADR  ADF+    GSDAAALAYEA 
Sbjct: 125 TLGKIAADLTEKGARVLIAAGDTFRAAAVEQLKVWADRAGADFMSKPTGSDAAALAYEAV 184

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+A+  DV++IDTAGRL N   LM  + K+IRV+K++DP  PH  L VLDAT G+NAL
Sbjct: 185 ERAKAEHYDVVLIDTAGRLQNKQGLMDELLKVIRVVKKVDPDYPHETLLVLDATVGRNAL 244

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F +  G +G++MTK+DGTARGG L+P+      P+  +GVGEG+ DL+PF A+ F
Sbjct: 245 AQEKIFGSQVGVSGIVMTKLDGTARGGVLVPVARASDSPIKLIGVGEGVEDLQPFDARAF 304

Query: 307 SAVITGCLD 315
           S  + G  D
Sbjct: 305 SRSLVGLKD 313


>gi|221638249|ref|YP_002524511.1| Signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides KD131]
 gi|221159030|gb|ACM00010.1| Signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides KD131]
          Length = 381

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 128/278 (46%), Positives = 191/278 (68%), Gaps = 1/278 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E LE++LI++D+GV  A ++   +   RY + VS + +   ++  I ++L 
Sbjct: 105 RRILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSAREIKEALAAEIARILE 164

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P     S RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++Q
Sbjct: 165 PVARPMPLYPS-RPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQ 223

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W  R     + +  GSD A+LA++A  +AQA+  D+L+IDTAGRL N + LM  + K
Sbjct: 224 LQVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRADLMEELSK 283

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV+++ DP APH+ L VLDATTGQNAL QVE+F  +A  +GL+MTK+DGTA+GG L+ 
Sbjct: 284 IVRVIRKKDPDAPHNTLLVLDATTGQNALNQVEIFRKLADVSGLVMTKLDGTAKGGVLVA 343

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +     +P++ +GVGE I+DL PF  ++F+  + G  D
Sbjct: 344 LADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 381


>gi|301169485|emb|CBW29086.1| cell division protein FtsY [Haemophilus influenzae 10810]
          Length = 414

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 109 GFFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 168

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 169 EHASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGK 228

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 229 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 288

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 289 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 348

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 349 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 408

Query: 311 T 311
            
Sbjct: 409 F 409


>gi|227524602|ref|ZP_03954651.1| signal recognition particle-docking protein FtsY [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088277|gb|EEI23589.1| signal recognition particle-docking protein FtsY [Lactobacillus
           hilgardii ATCC 8290]
          Length = 481

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 191/312 (61%), Gaps = 10/312 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           + + ASES    +   KG A +     + +  ++++ R +D+   ++LED+LI SD+G  
Sbjct: 163 DSETASES-GATQSYEKGLAKSRSSFGQKLNALLANFRHVDESFFDDLEDMLIESDVGFE 221

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVIL 115
            + KI ++L  +   ++    + + +V  ++ K++    +  N +          P VIL
Sbjct: 222 TSMKIADDLREEVKLQNAKKPKDVQNV--IVKKLIDMYDQAGNGENPAINLAKSGPTVIL 279

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VGVNGVGKTT IGK++K   D G KV+LAA DTFR+ AI+QL +WA R   D V S+  
Sbjct: 280 MVGVNGVGKTTTIGKMAKMYKDQGKKVVLAAADTFRAGAIEQLNVWAQRDGVDIVKSKPK 339

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD +++ ++A K+A+ +  D+L++DTAGRL N   LM  + KM ++L R  P APH VL 
Sbjct: 340 SDPSSVVFDAVKKARDEHYDILMVDTAGRLQNKVNLMNELSKMKKILTREIPEAPHEVLL 399

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNA+ Q +MF      TG+++TK+DGTARGG ++ I     +PV ++G+GE +
Sbjct: 400 VLDATTGQNAMTQAKMFKETTDVTGIVLTKLDGTARGGIVLAIRSELHLPVKYVGLGEKV 459

Query: 296 NDLEPFVAKDFS 307
            DL+PF   DF 
Sbjct: 460 TDLKPFDPNDFV 471


>gi|297617092|ref|YP_003702251.1| signal recognition particle protein [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144929|gb|ADI01686.1| signal recognition particle protein [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 447

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 149/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E    +    +L +        E+   L+ +D+   V +  V  +  +   
Sbjct: 3   FEGLSTRLQETFRKLRGKGKLTEEDVNLAMREVRLALLEADVNYKVVKDFVARVKERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V E + +++       N   +  P V+++VG+ G GKTT   KL
Sbjct: 63  QEVLKSLTPGQQVVKIVYEELTQLMGGDQTKLNL-AAKPPTVVMMVGLQGTGKTTTCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +   G + +L A D +R AAI QL++  ++ +          +   +A  A + A++
Sbjct: 122 ARSLLAQGRRPLLVAADIYRPAAIKQLQVLGEKCNCPVFSMG-QENPVNIARAALEYARS 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRLH N  LM  +  +   L       PH +L V+DA TGQ+A+     
Sbjct: 181 NGRDIVILDTAGRLHINEELMNELKDLKSSLN------PHEILLVVDAMTGQDAVNVASS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+++TK+DG  RGG  + +      P+ F GVGE + DLEPF     ++ I 
Sbjct: 235 FNEQLGLTGVVLTKLDGDTRGGAALSVKAVAGCPIKFAGVGEKLEDLEPFYPNRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|268317919|ref|YP_003291638.1| signal recognition particle-docking protein FtsY [Rhodothermus
           marinus DSM 4252]
 gi|262335453|gb|ACY49250.1| signal recognition particle-docking protein FtsY [Rhodothermus
           marinus DSM 4252]
          Length = 320

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 130/304 (42%), Positives = 189/304 (62%), Gaps = 6/304 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            +L +G   T   L   +  +I  + ++DD V ++LE+LLI SD+GV    +I+  +  +
Sbjct: 13  ERLEEGLEKTRTSLLGKLDRLIRGKDQVDDEVLDQLEELLITSDVGVKTTLEIIRRVEAR 72

Query: 74  -RYAKDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVI 128
               K VS + +   + + I ++L+  +      F+    H+P+VI+VVGVNGVGKTT I
Sbjct: 73  VARDKYVSTRELNAIIRDEIAQLLLDHAPERPADFDAPLPHKPYVIMVVGVNGVGKTTTI 132

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +  +AG  V+L A DTFR+AAI+QL+IWA+R     +    G+D AA+A++    
Sbjct: 133 GKLAYRYREAGKSVLLGAADTFRAAAIEQLEIWAERAGVPLIKQHPGADPAAVAFDTLAA 192

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+++ VDV+IIDTAGRLH    LM  + K+ RV+ R    APH VL VLDA+TGQNA+RQ
Sbjct: 193 AKSRGVDVVIIDTAGRLHTKGGLMEELAKIRRVMGRQVEGAPHEVLLVLDASTGQNAIRQ 252

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F      TGL++TK+DGTA+GG +I I    KIPV ++GVGE I DL+ F  + F  
Sbjct: 253 AEEFTKSVEVTGLVLTKLDGTAKGGIVIGISNEFKIPVKYIGVGEKIEDLQIFDRRAFVE 312

Query: 309 VITG 312
            + G
Sbjct: 313 ALFG 316


>gi|313901971|ref|ZP_07835387.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467760|gb|EFR63258.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermaerobacter subterraneus DSM 13965]
          Length = 445

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL+     +    +L +   E    E+   L+ +D+   V +  +  +  +  
Sbjct: 2   AFEGLAEKLQAVFKRLRGKGKLTEADVEAALREVRLALLEADVNFKVVKDFIARVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V + + +++       +      P V+++VG+ G GKTT   K
Sbjct: 62  GQEVLESLTPAQQVIKIVHDELTQLMGGQHARLDLGGEL-PAVVMLVGLQGSGKTTTAAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ ++  G + +L A D +R AA++QL     +            D   +A E   +A+
Sbjct: 121 LARLLTRQGRQPLLVAADVYRPAAVEQLVTLGQQVQVPVYAPGTDRDPVDIAREGVAEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV++IDTAGRLH +  LM  + ++ + +      AP  +L V+DA TGQ+A+   E
Sbjct: 181 RRGRDVVLIDTAGRLHIDDALMEELERIRQAV------APREILLVVDAMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G  G+I+TK+DG ARGG  + +      P+ F G+GE ++ LEPF  +  ++ I
Sbjct: 235 TFHRRLGIDGVILTKLDGDARGGAALSVRAVTGRPIKFAGLGERVDQLEPFHPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|194324332|ref|ZP_03058105.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. novicida FTE]
 gi|194321397|gb|EDX18882.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. novicida FTE]
          Length = 343

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 192/313 (61%), Gaps = 2/313 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           +          +L  G + T+ K   G++ I+   + +D+ + E++E  L+ +D+GV   
Sbjct: 31  QEQDNKKGLFSRLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEAT 90

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +IV  L  K    ++     L   + + + ++++P  KP   D    P VILVVGVNGV
Sbjct: 91  DEIVAYLRDKVARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGV 150

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W +R +   V    G+D+A++ 
Sbjct: 151 GKTTTIGKLTKKLQSQGKSVILAAGDTFRAAAVEQLREWGNRNNTHVVYQHEGADSASVI 210

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A++K +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG
Sbjct: 211 YDAISSAKSKGIDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTG 270

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            NAL Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F 
Sbjct: 271 GNALSQAEAFNQIVNLTGITITKLDGTAKGGIVFSIAKKLSLPLRFIGVGEKIDDLQVFN 330

Query: 303 AKDFSAVITGCLD 315
           A+DF+  +    D
Sbjct: 331 ARDFTTALFNSND 343


>gi|83950639|ref|ZP_00959372.1| signal recognition particle-docking protein FtsY [Roseovarius
           nubinhibens ISM]
 gi|83838538|gb|EAP77834.1| signal recognition particle-docking protein FtsY [Roseovarius
           nubinhibens ISM]
          Length = 489

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 126/276 (45%), Positives = 188/276 (68%), Gaps = 1/276 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E+LE+LLI +D+GV  A ++   +   R  K +S Q +   ++  I +++ 
Sbjct: 213 RRALDDDMLEQLEELLITADMGVDTALRVTANMAEGRMGKRLSTQEIKELLAAEIARIME 272

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P    ++  P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++Q
Sbjct: 273 PVARPMPL-YTKSPQVVLVVGVNGSGKTTTIGKLASQFKAAGKSVVIAAGDTFRAAAVEQ 331

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W DR     + +  GSD A+LA++A  +AQ    D+L+IDTAGRL N + LM  + K
Sbjct: 332 LQVWGDRAGVPVLTAPEGSDPASLAFDAMDRAQRDGADLLMIDTAGRLQNRADLMEELAK 391

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV+++ D  APH+ L VLDATTGQNAL QV+ F  +A  +GL+MTK+DGTA+GG L+ 
Sbjct: 392 IVRVIRKKDETAPHNTLLVLDATTGQNALSQVKTFQELADVSGLVMTKLDGTAKGGVLVA 451

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +     +P++ +GVGE I+DL PF  +DF+A +TG 
Sbjct: 452 LADKFGLPIHAIGVGEQIDDLAPFDPEDFAAALTGL 487


>gi|310765701|gb|ADP10651.1| Cell division protein [Erwinia sp. Ejp617]
          Length = 492

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 124/315 (39%), Positives = 192/315 (60%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV 
Sbjct: 179 AKEQERPSKEGFFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVE 238

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             ++I+  L  +   K +     LY + +  + ++L  +  P +      P VIL+VGVN
Sbjct: 239 TTRRIIGNLTNQASRKQLRDAEALYGLLKTDMAEILAKVESPLDIS-GKMPFVILMVGVN 297

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A+
Sbjct: 298 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSAS 357

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ VDVLI DTAGRL N + LM  + K+ RV+K+LD  APH V+  +DA+
Sbjct: 358 VIFDAIQAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDAS 417

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI+DL P
Sbjct: 418 TGQNAISQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADLFTIPIRYIGVGEGIDDLRP 477

Query: 301 FVAKDFSAVITGCLD 315
           F A DF   +    D
Sbjct: 478 FKADDFIEALFARED 492


>gi|163748790|ref|ZP_02156042.1| cell division protein FtsY [Shewanella benthica KT99]
 gi|161331564|gb|EDQ02369.1| cell division protein FtsY [Shewanella benthica KT99]
          Length = 456

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 189/303 (62%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
              +  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    ++++ 
Sbjct: 145 KEGFFARLKRGLKRTSENIGSGFIGLFKGKKIDDDLFEELEEQLLIADVGVETTTRLIDS 204

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   K +     LY++  E + K L P+S P   + +  P VIL+VGVNGVGKTT I
Sbjct: 205 LTEQASRKQLKDGEALYELLREEMQKTLEPVSIPLVPESADGPFVILMVGVNGVGKTTTI 264

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + 
Sbjct: 265 GKLAKQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVLFDALQA 324

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLI DTAGRL N   LM  + K++RV+K+LD +APH V+  LDA TGQNA+ Q
Sbjct: 325 ARARNIDVLIADTAGRLQNKVHLMDELKKIVRVMKKLDENAPHEVMLTLDAGTGQNAISQ 384

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E+F    G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  F AKDF  
Sbjct: 385 AELFKKAVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDFID 444

Query: 309 VIT 311
            + 
Sbjct: 445 ALF 447


>gi|209519635|ref|ZP_03268425.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           H160]
 gi|209499921|gb|EDZ99986.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           H160]
          Length = 375

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 129/307 (42%), Positives = 183/307 (59%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A    SW+ +L  G + TS  L    T I    ++D+ + EELE  L+ SD GV   + +
Sbjct: 74  AGAKRSWLTRLKSGLSKTSSSL----TGIFVGTKIDEDLYEELETALLMSDAGVEATEFL 129

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E L  K  +  ++  + +   +  L+ ++L PL K      +  P V+++ GVNG GKT
Sbjct: 130 LESLREKVRSDRLTDPQQVKTALRTLLVELLKPLEKSLMLGRAQ-PLVMMIAGVNGAGKT 188

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K +      V+LAAGDTFR+AA +QL +W  R +   V  E   D AA+ ++A
Sbjct: 189 TSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGQRNNVTVVAQE-SGDPAAVIFDA 247

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNA
Sbjct: 248 VGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNA 307

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++
Sbjct: 308 LTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEE 367

Query: 306 FSAVITG 312
           FS  + G
Sbjct: 368 FSDALLG 374


>gi|145638433|ref|ZP_01794043.1| cell division protein [Haemophilus influenzae PittII]
 gi|145272762|gb|EDK12669.1| cell division protein [Haemophilus influenzae PittII]
          Length = 420

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 115 GFFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 174

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 175 EHASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGK 234

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 235 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 294

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 295 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 354

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 355 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 414

Query: 311 T 311
            
Sbjct: 415 F 415


>gi|309751571|gb|ADO81555.1| Signal recognition particle receptor FtsY [Haemophilus influenzae
           R2866]
          Length = 435

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 130 GFFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 189

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 190 EHASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGK 249

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 250 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 309

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 310 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 369

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 370 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 429

Query: 311 T 311
            
Sbjct: 430 F 430


>gi|145636676|ref|ZP_01792343.1| cell division protein FtsY [Haemophilus influenzae PittHH]
 gi|145270202|gb|EDK10138.1| cell division protein FtsY [Haemophilus influenzae PittHH]
          Length = 400

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 95  GFFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 154

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 155 EHASRKELQDAELLYQQLKVEMADILEPVARPLEIDSTKKPYVILMVGVNGVGKTTTIGK 214

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 215 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 274

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 275 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 334

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 335 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 394

Query: 311 T 311
            
Sbjct: 395 F 395


>gi|167617829|ref|ZP_02386460.1| signal recognition particle-docking protein FtsY [Burkholderia
           thailandensis Bt4]
          Length = 328

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 128/304 (42%), Positives = 183/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G A TS      IT++  + ++DD + EELE  L+ SD GV   + ++  
Sbjct: 31  KKSWIARLKSGLAKTS----SSITNVFVNTKIDDALYEELETALLMSDAGVDATEHLLGA 86

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K     ++  + + D +  L+ ++L PL K      +  P V+++ GVNG GKTT I
Sbjct: 87  LREKVRTGRLTDPQQVKDALRGLLVELLTPLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSI 145

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 146 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVSA 204

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 205 ARARNIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQ 264

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++F+ 
Sbjct: 265 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFAD 324

Query: 309 VITG 312
            + G
Sbjct: 325 ALLG 328


>gi|303250568|ref|ZP_07336765.1| cell division protein FtsY-like protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252987|ref|ZP_07534874.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650556|gb|EFL80715.1| cell division protein FtsY-like protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859516|gb|EFM91542.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 581

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 196/309 (63%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+  SE   +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+   
Sbjct: 270 QEKPSEG-GFFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTT 328

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            K++  L      K +    +LY  +   + ++L P+S+P   D S +P+VIL+VGVNGV
Sbjct: 329 TKVINNLTQHASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGV 388

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ 
Sbjct: 389 GKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVI 448

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A +K +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TG
Sbjct: 449 FDAMQSAASKGIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTG 508

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF 
Sbjct: 509 QNAISQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFN 568

Query: 303 AKDFSAVIT 311
           A++F   + 
Sbjct: 569 AEEFIEALF 577


>gi|300692639|ref|YP_003753634.1| signal recognition particle (SRP) GTPase [Ralstonia solanacearum
           PSI07]
 gi|299079699|emb|CBJ52376.1| Signal recognition particle (SRP) GTPase [Ralstonia solanacearum
           PSI07]
          Length = 375

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 180/308 (58%), Gaps = 7/308 (2%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V      W+ +L  G + TS    +G+T +    ++D+ + EELE  L+ +D GV   + 
Sbjct: 74  VEQARKGWMSRLRSGLSKTS----KGLTTLFVGVKVDEALFEELETALLMADAGVDATEY 129

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++ EL  +  A+ +     +   + +L+ ++L PL K         P VI++ GVNG GK
Sbjct: 130 LLGELRRRVKAQRIETAEGVKTALRDLLIELLHPLEKTMVLGREQ-PTVIMIAGVNGAGK 188

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL K     G  V+LAAGDTFR+AA +QL IW  R +   V  E   D AA+ ++
Sbjct: 189 TTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQE-SGDPAAVIFD 247

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+A+ +D+++ DTAGRL     LM  + K+ RV+ +    APH  L V+DA TGQN
Sbjct: 248 AVNAARARGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQN 307

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A+
Sbjct: 308 ALAQVKAFDDTLGLTGLIITKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAR 367

Query: 305 DFSAVITG 312
           +F+  + G
Sbjct: 368 EFADALLG 375


>gi|254374967|ref|ZP_04990447.1| hypothetical protein FTDG_01149 [Francisella novicida GA99-3548]
 gi|151572685|gb|EDN38339.1| hypothetical protein FTDG_01149 [Francisella novicida GA99-3548]
          Length = 343

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 192/313 (61%), Gaps = 2/313 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           +          +L  G + T+ K   G++ I+   + +D+ + E++E  L+ +D+GV   
Sbjct: 31  QEQDNKKGLFSRLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEAT 90

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +IV  L  K    ++     L   + + + ++++P  KP   D    P VILVVGVNGV
Sbjct: 91  DEIVAYLRDKVARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKLPFVILVVGVNGV 150

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ 
Sbjct: 151 GKTTTIGKLTKKLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQHEGADSASVI 210

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A++K +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG
Sbjct: 211 YDAISSAKSKGIDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTG 270

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            NAL Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F 
Sbjct: 271 GNALNQAEAFNQIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFN 330

Query: 303 AKDFSAVITGCLD 315
           A+DF+  +    D
Sbjct: 331 ARDFTTALFNSND 343


>gi|332678887|gb|AEE88016.1| Signal recognition particle receptor protein FtsY (alpha subunit)
           [Francisella cf. novicida Fx1]
          Length = 331

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 192/313 (61%), Gaps = 2/313 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           +          +L  G + T+ K   G++ I+   + +D+ + E++E  L+ +D+GV   
Sbjct: 19  QEQDNKKGLFSRLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEAT 78

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +IV  L  K    ++     L   + + + ++++P  KP   D    P VILVVGVNGV
Sbjct: 79  DEIVAYLRDKVARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKLPFVILVVGVNGV 138

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ 
Sbjct: 139 GKTTTIGKLTKKLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQHEGADSASVI 198

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A++K +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG
Sbjct: 199 YDAISSAKSKGIDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTG 258

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            NAL Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F 
Sbjct: 259 GNALNQAEAFNQIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFD 318

Query: 303 AKDFSAVITGCLD 315
           A+DF+  +    D
Sbjct: 319 ARDFTTALFNSND 331


>gi|145630513|ref|ZP_01786293.1| cell division protein FtsY [Haemophilus influenzae R3021]
 gi|144983903|gb|EDJ91345.1| cell division protein FtsY [Haemophilus influenzae R3021]
          Length = 400

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 126/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KIV+ L 
Sbjct: 95  GFFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIVKNLT 154

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 155 EHASRKELQDAELLYQQLKVEMADILEPVARPLEIDSTKKPYVILMVGVNGVGKTTTIGK 214

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 215 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 274

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 275 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 334

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 335 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 394

Query: 311 T 311
            
Sbjct: 395 F 395


>gi|308048457|ref|YP_003912023.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ferrimonas
           balearica DSM 9799]
 gi|307630647|gb|ADN74949.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ferrimonas
           balearica DSM 9799]
          Length = 455

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FQNLSERLNQTLKNISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVRERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +   +   ++  N   +  P VI++ G+ G GKTT +GKL
Sbjct: 62  TEVSKSLTPGQAFIKIVRTEMEAAMGEANEALNL-AAQPPAVIMMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K + + + D +R AAI QL+  A     +F  S +     A+A  A   A+
Sbjct: 121 AKFLKERHKKSVLVVSADVYRPAAIKQLETLASDIGVEFFPSTVEQKPVAIATAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRLH +S +M  I  +   +       P   L  +DA TGQ+A    +
Sbjct: 181 RKFFDVVIVDTAGRLHVDSDMMEEIKALHAAIN------PVETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|125973288|ref|YP_001037198.1| signal recognition particle subunit FFH/SRP54 (srp54) [Clostridium
           thermocellum ATCC 27405]
 gi|256003768|ref|ZP_05428756.1| signal recognition particle protein [Clostridium thermocellum DSM
           2360]
 gi|281417492|ref|ZP_06248512.1| signal recognition particle protein [Clostridium thermocellum JW20]
 gi|125713513|gb|ABN52005.1| signal recognition particle subunit FFH/SRP54 (srp54) [Clostridium
           thermocellum ATCC 27405]
 gi|255992329|gb|EEU02423.1| signal recognition particle protein [Clostridium thermocellum DSM
           2360]
 gi|281408894|gb|EFB39152.1| signal recognition particle protein [Clostridium thermocellum JW20]
 gi|316940480|gb|ADU74514.1| signal recognition particle protein [Clostridium thermocellum DSM
           1313]
          Length = 446

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 155/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+E +  +    R+ +     +  E++  L+ +D+   V +  + ++  +   
Sbjct: 3   FEGLSGKLQEAMKKLRGKGRVTEKDVKEMMREIKLALLEADVNFKVVKDFIGKVSERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V E +  ++   +    +  S  P + ++VG+ G GKTT  GKL
Sbjct: 63  QEVLESLTPGQQVIKIVHEELINLMGSANSKVTFS-SKPPTIYMMVGLQGSGKTTTSGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G K +L A D +R AAI QL++   +   +       ++   +A  A + A++
Sbjct: 122 ANLLRKQGKKPLLVACDVYRPAAIKQLQVVGSQLGIEVFSMGDKTNPVDIAKAAVEYAKS 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ D++IIDTAGRLH N  LM  +  +   +       P  +L V+D+ TGQ+A+   E 
Sbjct: 182 RQYDLVIIDTAGRLHINEELMEELQNIKEAV------RPQEILLVVDSMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + +      P+ F+G+GE +ND+EPF     ++ I 
Sbjct: 236 FNEKLGVDGIILTKLDGDTRGGAALSVKAVTGKPIKFIGMGEKLNDIEPFFPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|210622533|ref|ZP_03293226.1| hypothetical protein CLOHIR_01174 [Clostridium hiranonis DSM 13275]
 gi|210154168|gb|EEA85174.1| hypothetical protein CLOHIR_01174 [Clostridium hiranonis DSM 13275]
          Length = 453

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+   + + S  +L +  V++ + +    L+ +D+   V +  ++++  +   
Sbjct: 3   FEGLSDKLQNTFSKLRSKGKLTEKDVKDAMREVKLALLEADVNFKVVKDFIKKVQERCVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V+E +  ++  +        S  P VI++VG+ G GKTT  GKL
Sbjct: 63  QEVMKSLTPGQHVIKIVNEELTALMGDVQSKIMIS-SKPPTVIMMVGLQGAGKTTTAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
                  G K +L A D +R AAI QL++  ++            +   +A      AQ 
Sbjct: 122 GGYFKKQGKKPLLVACDVYRPAAIKQLQVVGEKLDIPVFAMGDKENPVNIAKAGLSHAQK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++IIDTAGRLH + +LM  +  +   +       PH +L  +DA TGQ+A+   E 
Sbjct: 182 NGNDMVIIDTAGRLHVDEVLMEELKNIKSEV------RPHEILLTVDAMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DG  RGG  + I    K P+ F+G+GE + DLEPF     ++ I 
Sbjct: 236 FNDALGIDGVVLTKLDGDTRGGAALSIRAVTKKPIKFIGMGEKLEDLEPFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|189426542|ref|YP_001953719.1| signal recognition particle-docking protein FtsY [Geobacter lovleyi
           SZ]
 gi|189422801|gb|ACD97199.1| signal recognition particle-docking protein FtsY [Geobacter lovleyi
           SZ]
          Length = 342

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 123/304 (40%), Positives = 176/304 (57%), Gaps = 3/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
                 +L  G   T+  L   I  + +  + +D    EELE++LI SDIGV    +++ 
Sbjct: 37  KPGLFERLKAGLKKTTDGLVGRIDALVLGKKEIDADTLEELEEILITSDIGVKTTVELIR 96

Query: 69  ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +    ++     L   + + +   L+    P   + +  P  ILVVGVNGVGKTT 
Sbjct: 97  SLEQRLSRNELKDGAALRGALKDELLARLLAHHTPLRLEGTA-PFTILVVGVNGVGKTTT 155

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ K +  G KV+LAAGDTFR+AA +QL+IW DR     +  + G+D +A+A++A K
Sbjct: 156 IGKLAAKYAAEGRKVLLAAGDTFRAAAAEQLEIWGDRAGVSVIRHQEGADPSAVAFDACK 215

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A ++  ++LIIDTAGRLH    LM  + K+ RV+ R  P APH  L VLD  TGQNAL 
Sbjct: 216 AAVSRGTEILIIDTAGRLHTKVNLMEEMKKIHRVIGREIPGAPHETLLVLDGATGQNALS 275

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q  +F   AG TG+ +TK+DGTA+GG ++ +     +PV F+GVGEGI+DL  F   +F 
Sbjct: 276 QARLFKESAGVTGIALTKLDGTAKGGIVVAVSHEFGLPVRFIGVGEGIDDLREFEPNEFV 335

Query: 308 AVIT 311
             + 
Sbjct: 336 DALF 339


>gi|292487301|ref|YP_003530173.1| signal recognition 54 kDa protein (SRP54) [Erwinia amylovora
           CFBP1430]
 gi|291552720|emb|CBA19765.1| Signal recognition 54 kDa protein (SRP54) [Erwinia amylovora
           CFBP1430]
 gi|312171409|emb|CBX79668.1| Signal recognition 54 kDa protein (SRP54) [Erwinia amylovora ATCC
           BAA-2158]
          Length = 481

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 30  FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFIGRVKERAVG 89

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   +   +   +   N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 90  QEVNKSLTPGQEFVKIVKNELVAAMGEENNTLNL-AAQPPAVILMAGLQGAGKTTSVGKL 148

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++      +   A +QA+
Sbjct: 149 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFCPSDLTQQPVDIVKNALQQAK 208

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 209 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAK 262

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ F+GVGE    LEPF     ++ I
Sbjct: 263 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPDRIASRI 322

Query: 311 TGCLDY 316
            G  D 
Sbjct: 323 LGMGDM 328


>gi|297544730|ref|YP_003677032.1| signal recognition particle protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842505|gb|ADH61021.1| signal recognition particle protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 446

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L+E    +    +L +  ++E + +    L+ +D+   V +  +  +  K  
Sbjct: 2   AFESLSERLQEIFKKLRGKGKLTEKDIKEAMREVKVALLEADVNFKVVKDFINSVTEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V++ +  ++       N   +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQEVMESLTPGQQVIKIVNDELIALMGSTQSRLNIG-NKVPAVIMMVGLQGSGKTTACGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G   +L A D  R AAI QL++     +         ++   +A  +   A+
Sbjct: 121 LANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVFTMGDKANPVDIAKASIDYAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   DV+IIDTAGRLH +  LM  +  + R ++      P  +L V+DA TGQ+A+    
Sbjct: 181 SHNSDVIIIDTAGRLHIDEELMEELVNIKRAVQ------PDEILLVVDAMTGQDAVNVAS 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + I    + P+ ++G GE + DLEPF     ++ I
Sbjct: 235 SFNERLDITGVILTKLDGDTRGGAALSIKAVTQKPIKYVGTGEKLTDLEPFYPNRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|241667800|ref|ZP_04755378.1| signal recognition particle-docking protein FtsY [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 333

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 123/309 (39%), Positives = 195/309 (63%), Gaps = 2/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           +          +L  G + T+ K   G++ I+   + +DD + E++E  L+ SD+GV   
Sbjct: 19  QEQDNKKGLFSRLQSGLSKTASKFGSGLSTILMGQKVVDDELLEDIEMQLLTSDVGVEAT 78

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +I+E L  K    ++     L   + + + ++++P  KP   +  + P+VIL+VGVNGV
Sbjct: 79  DEIIEYLRGKVARNELQTADKLNEIIQDKLTEIILPCQKPLQINHENTPYVILIVGVNGV 138

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W DR +   V  + G+D+A++ 
Sbjct: 139 GKTTTIGKLTKKLQSEGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQKEGADSASVI 198

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A+++ +DV+I DTAGRLHN   LM  + K+++V+K++D  APH  + V+DATTG
Sbjct: 199 YDAISSAKSRGIDVVIADTAGRLHNKDNLMQELKKVVKVIKKVDDSAPHETMLVVDATTG 258

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            NAL Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F 
Sbjct: 259 GNALSQAEAFNEIVNLTGITITKLDGTAKGGIVFSIAKKMGLPLRFIGVGEKIDDLQVFN 318

Query: 303 AKDFSAVIT 311
           AK+F+  + 
Sbjct: 319 AKNFTKALF 327


>gi|7230353|gb|AAF42961.1|AF090335_1 FtsY [Caulobacter vibrioides]
          Length = 313

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 136/309 (44%), Positives = 200/309 (64%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
             +   W ++LT G   +S  + E +T + + + LD    + LE++LI +D+G  +A +I
Sbjct: 5   PEQKKGWFQRLTSGLTRSSQAMTEQVTGVFTKKALDQEQLDALEEMLIEADLGPQIAARI 64

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            E     R+ K  +   V   ++ELI   L      F+     RP+V+L +GVNG GKTT
Sbjct: 65  TEAFGKARFGKSSTDDEVKEALAELIAAELADRQGDFDPLNGPRPYVVLFIGVNGSGKTT 124

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GK++  +++ G +V++AAGDTFR+AA++QLK+WADR  ADF+    GSDAAALAYEA 
Sbjct: 125 TLGKIAADLTEKGARVLIAAGDTFRAAAVEQLKVWADRAGADFMSKPTGSDAAALAYEAV 184

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+A+  DV++IDTAGRL N   LM  + K IRV+K++DP  PH  L VLDAT G+NAL
Sbjct: 185 ERAKAEHYDVVLIDTAGRLQNKQGLMDELLKGIRVVKKVDPDYPHETLLVLDATVGRNAL 244

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F +  G +G++MTK+DGTARGG L+P+      P+  +GVGEG+ DL+PF A+ F
Sbjct: 245 AQEKIFGSQVGVSGIVMTKLDGTARGGVLVPVARASDSPIKLIGVGEGVEDLQPFDARAF 304

Query: 307 SAVITGCLD 315
           S  + G  D
Sbjct: 305 SRSLVGLKD 313


>gi|254876344|ref|ZP_05249054.1| signal recognition particle receptor ftsY [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842365|gb|EET20779.1| signal recognition particle receptor ftsY [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 334

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 123/309 (39%), Positives = 195/309 (63%), Gaps = 2/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           +          +L  G + T+ K   G++ I+   + +DD + E++E  L+ SD+GV   
Sbjct: 20  QEQDNKKGLFSRLQSGLSKTASKFGSGLSTILMGQKVVDDELLEDIEMQLLTSDVGVEAT 79

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +I+E L  K    ++     L   + + + ++++P  KP   +  + P+VIL+VGVNGV
Sbjct: 80  DEIIEYLRGKVARNELQTADKLNEIIQDKLTEIILPCQKPLQINHENTPYVILIVGVNGV 139

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W DR +   V  + G+D+A++ 
Sbjct: 140 GKTTTIGKLTKKLQSEGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQKEGADSASVI 199

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A+++ +DV+I DTAGRLHN   LM  + K+++V+K++D  APH  + V+DATTG
Sbjct: 200 YDAISSAKSRGIDVVIADTAGRLHNKDNLMQELKKVVKVIKKVDDSAPHETMLVVDATTG 259

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            NAL Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F 
Sbjct: 260 GNALSQAEAFNEIVNLTGITITKLDGTAKGGIVFSIAKKMGLPLRFIGVGEKIDDLQVFN 319

Query: 303 AKDFSAVIT 311
           AK+F+  + 
Sbjct: 320 AKNFTKALF 328


>gi|148826589|ref|YP_001291342.1| cell division protein FtsY [Haemophilus influenzae PittEE]
 gi|148716749|gb|ABQ98959.1| cell division protein FtsY [Haemophilus influenzae PittEE]
          Length = 400

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 95  GFFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 154

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 155 EHASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGK 214

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 215 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 274

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 275 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 334

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 335 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 394

Query: 311 T 311
            
Sbjct: 395 F 395


>gi|86148197|ref|ZP_01066495.1| cell division protein FtsY [Vibrio sp. MED222]
 gi|85834044|gb|EAQ52204.1| cell division protein FtsY [Vibrio sp. MED222]
          Length = 422

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 197/310 (63%), Gaps = 1/310 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            +     + S+  +L +  + T   +  G   +   +++D+ + EELE+ L+ +D+G+  
Sbjct: 109 EEVQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKQIDEDLFEELEEQLLIADVGMNT 168

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             KI+E L  K    D+     LY  + E + ++L  + +P   D +  P+VIL+VGVNG
Sbjct: 169 TVKIIENLTEKASRNDLKDGEALYGLLKEEMSEILSQVEQPLVVDTTKTPYVILMVGVNG 228

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W  R     +    G+D+A++
Sbjct: 229 VGKTTTIGKLAKQFQSEGKKVMLAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASV 288

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A + A+A+ VDV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA T
Sbjct: 289 IYDAIEAAKARGVDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGT 348

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q ++F  VA  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGEGI+DL PF
Sbjct: 349 GQNAISQAKLFSDVAPVTGITLTKLDGTAKGGVIFSIADLFQIPIRYIGVGEGIDDLRPF 408

Query: 302 VAKDFSAVIT 311
            +KDF   + 
Sbjct: 409 ESKDFIEALF 418


>gi|188535387|ref|YP_001909184.1| Cell division protein [Erwinia tasmaniensis Et1/99]
 gi|188030429|emb|CAO98323.1| Cell division protein [Erwinia tasmaniensis Et1/99]
          Length = 494

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 125/315 (39%), Positives = 192/315 (60%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV 
Sbjct: 181 ATEQERPSKEGFFARLKRSLVKTRTNLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVD 240

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             ++I+  L T+   K +     LY + +  + ++L  +  P +      P VIL+VGVN
Sbjct: 241 TTRRIIGNLTTQASRKQLRDAEALYGLLKTDMAEILAKVESPLDVS-GKTPFVILMVGVN 299

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A+
Sbjct: 300 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQHTGADSAS 359

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ VDVLI DTAGRL N S LM  + K+ RV+K+LD  APH V+  +DA+
Sbjct: 360 VIFDAIQAAKARHVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDDSAPHEVMLTIDAS 419

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL  
Sbjct: 420 TGQNAISQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFTIPIRYIGVGEGIEDLRS 479

Query: 301 FVAKDFSAVITGCLD 315
           F A DF   +    D
Sbjct: 480 FKADDFIEALFARED 494


>gi|300705260|ref|YP_003746863.1| signal recognition particle (srp) GTPase [Ralstonia solanacearum
           CFBP2957]
 gi|299072924|emb|CBJ44280.1| Signal recognition particle (SRP) GTPase [Ralstonia solanacearum
           CFBP2957]
          Length = 387

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 178/308 (57%), Gaps = 7/308 (2%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V      W+ +L  G + TS  L    T +    ++D+ + EELE  L+ +D GV   + 
Sbjct: 86  VEQARKGWMSRLRSGLSKTSKSL----TTLFVGVKVDEALFEELETALLMADAGVDATEY 141

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++ EL  +  A+ +     +   + +L+ ++L PL K         P VI++ GVNG GK
Sbjct: 142 LLNELRRRVKAQRIETAESVKTALRDLLIELLHPLEKTMVLGRDQ-PMVIMIAGVNGAGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL K     G  V+LAAGDTFR+AA +QL IW  R +   V  E   D AA+ ++
Sbjct: 201 TTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQE-SGDPAAVIFD 259

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+A+ +D+++ DTAGRL     LM  + K+ RV+ +    APH  L V+DA TGQN
Sbjct: 260 AVNAARARGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMVTAPHETLLVIDANTGQN 319

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A+
Sbjct: 320 ALAQVKAFDDTLGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAR 379

Query: 305 DFSAVITG 312
           +F+  + G
Sbjct: 380 EFADALLG 387


>gi|303241509|ref|ZP_07328010.1| signal recognition particle protein [Acetivibrio cellulolyticus
           CD2]
 gi|302590927|gb|EFL60674.1| signal recognition particle protein [Acetivibrio cellulolyticus
           CD2]
          Length = 450

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 154/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+E I  +    R+++     +  E++  L+ +D+   V +  + ++  +   
Sbjct: 3   FEGLSNKLQETIKKLKGKGRVNEKDVKEMMREIKLALLEADVNFKVVKDFIAKVSERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+++  V E +  ++ P      +     P V ++VG+ G GKTT  GKL
Sbjct: 63  QDVLESLTPGQQIIKIVHEELINLMGPGQSKVVF-APKPPTVYMMVGLQGSGKTTTSGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL++   +   D       ++   +A  A + A+ 
Sbjct: 122 ANLLRKQGKNPLLVACDVYRPAAIKQLQVVGGQLGVDVFSMGDQTNPVDIAKAAVEHAKI 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K+ D++IIDTAGRLH +  LM  +  +       D   PH +L V+D+ TGQ+A+   E 
Sbjct: 182 KQYDLVIIDTAGRLHIDEKLMDELKNIK------DTVRPHEILLVVDSMTGQDAVNVSET 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + +      P+ F+G+GE ++DLEPF     ++ I 
Sbjct: 236 FNEKLGVDGVILTKLDGDTRGGAALSVKTVTGKPIKFIGMGEKLSDLEPFFPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|260893271|ref|YP_003239368.1| signal recognition particle protein [Ammonifex degensii KC4]
 gi|260865412|gb|ACX52518.1| signal recognition particle protein [Ammonifex degensii KC4]
          Length = 445

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 147/304 (48%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + KL+E    + +  +L +        E+   L+ +D+   V +  +  +  +   
Sbjct: 4   FFGLTEKLQEVFKKLRNKGKLTEEDVNAALREIRLALLEADVNYKVVKDFIARIKERAVG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V        +V+  V + +  ++   S   N      P V+++VG+ G GKTT   KL
Sbjct: 64  QEVIQSLSPAHQVVKIVRDELVSLMGGQSARLNL-APKPPTVVMLVGLQGSGKTTTAAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L A D +R AA+ QL++  ++            +   +A  A  +A  
Sbjct: 123 ALSLKKQGRRPLLVAADVYRPAAVKQLQVLGEQIQVPVWSRP--GNPVEIAASAMHEANH 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DV+IIDTAGRLH N  LM  + ++   +K      PH VL V+DA TGQ+A+   E 
Sbjct: 181 KGYDVVIIDTAGRLHINEELMQELEEIKARVK------PHEVLLVVDAMTGQDAVTVAET 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G  G+++TK+DG  RGG  + I      P+ F+GVGE ++ LEPF     +  I 
Sbjct: 235 FHQRLGLDGVVLTKLDGDTRGGAALSIRAVTGCPIKFVGVGEKLDMLEPFHPDRMADRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|20807909|ref|NP_623080.1| Signal recognition particle GTPase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516476|gb|AAM24684.1| Signal recognition particle GTPase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 447

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 151/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L+     +    +L +  ++E + +    L+ +D+   V +  +  +  K  
Sbjct: 3   AFESLSERLQGVFKKLRGKGKLTEKDIKEAMREVKVALLEADVNFKVVKDFINSVTEKAL 62

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V E + K++  +    N   S  P VI++VG+ G GKTT  GK
Sbjct: 63  GQEVMESLTPAQQVIKIVHEELIKLMGSVESRLNLG-SKVPAVIMMVGLQGSGKTTACGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G   +L A DT R AAI QL++     +          D A +A  +   A+
Sbjct: 122 LANLLKKQGKNPLLVACDTVRPAAIKQLQVLGANINVPVFTMGDKVDTADIAKASIDYAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +  VDV+IIDTAGRLH +  LM  + ++   +       P  +L V DA TGQ+A+    
Sbjct: 182 SHNVDVVIIDTAGRLHIDDELMEELVRIKEAVH------PDEILLVADAMTGQDAVNVAS 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + I    + P+ ++G+GE + D+EPF     ++ I
Sbjct: 236 SFNERLDITGVILTKLDGDTRGGAALSIKAVTQKPIKYVGIGEKLGDIEPFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|83746837|ref|ZP_00943884.1| FtsY [Ralstonia solanacearum UW551]
 gi|83726422|gb|EAP73553.1| FtsY [Ralstonia solanacearum UW551]
          Length = 328

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 178/308 (57%), Gaps = 7/308 (2%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +      W+ +L  G + TS  L    T +    ++D+ + EELE  L+ +D GV   + 
Sbjct: 27  MEQARKGWMSRLRSGLSKTSKSL----TTLFVGVKVDETLFEELETALLMADAGVDATEY 82

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++EL  +   + +     +   + +L+ ++L PL K         P VI++ GVNG GK
Sbjct: 83  LLDELRRRVKTQRIETAESVKTALRDLLVELLHPLEKTMVLGRDQ-PMVIMIAGVNGAGK 141

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL K     G  V+LAAGDTFR+AA +QL IW  R +   V  E   D AA+ ++
Sbjct: 142 TTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQE-SGDPAAVIFD 200

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+A+ +D+++ DTAGRL     LM  + K+ RV+ +    APH  L V+DA TGQN
Sbjct: 201 AVNAARARGIDIVMADTAGRLPTQMHLMEELKKVRRVIGKAMVTAPHETLLVIDANTGQN 260

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A+
Sbjct: 261 ALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAR 320

Query: 305 DFSAVITG 312
           +F+  + G
Sbjct: 321 EFADALLG 328


>gi|254373505|ref|ZP_04988992.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151571230|gb|EDN36884.1| signal recognition particle receptor FtsY [Francisella novicida
           GA99-3549]
          Length = 343

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 192/313 (61%), Gaps = 2/313 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           +          +L  G + T+ K   G++ I+   + +D+ + E++E  L+ +D+GV   
Sbjct: 31  QEQDNKKGLFSRLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEAT 90

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +IV  L  K    ++     L   + + + ++++P  KP   D    P VILVVGVNGV
Sbjct: 91  DEIVAYLRDKVARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGV 150

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ 
Sbjct: 151 GKTTTIGKLTKKLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQHEGADSASVI 210

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A++K +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG
Sbjct: 211 YDAISSAKSKGIDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTG 270

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            NAL Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F 
Sbjct: 271 GNALSQAEAFNQIVNLTGITITKLDGTAKGGIVFSIAKKLSLPLRFIGVGEKIDDLQVFN 330

Query: 303 AKDFSAVITGCLD 315
           A+DF+  +    D
Sbjct: 331 ARDFTTALFNSND 343


>gi|331701483|ref|YP_004398442.1| signal recognition particle-docking protein FtsY [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128826|gb|AEB73379.1| signal recognition particle-docking protein FtsY [Lactobacillus
           buchneri NRRL B-30929]
          Length = 446

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/313 (38%), Positives = 188/313 (60%), Gaps = 9/313 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S +   S + S  ++  KG   +     + +  ++++ R +D+   ++LED+LI SD+G 
Sbjct: 126 SPEPAESATDSNTQQYEKGLEKSRSSFGQKLNALLANFRHVDESFFDDLEDMLIESDVGF 185

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVI 114
             + +I +EL  +   ++    + + +V  ++ K++    +  N +          P VI
Sbjct: 186 ETSMRIADELRDEVKLQNAKNPKDVQNV--IVKKLIDMYDQAGNGENSAINMAKSGPTVI 243

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + VGVNGVGKTT IGK++K   D G KV+LAA DTFR+ AI+QL +WA+R   D V  + 
Sbjct: 244 MFVGVNGVGKTTTIGKMAKMYKDQGKKVVLAAADTFRAGAIEQLNVWAERDGVDIVKGKA 303

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            SD A++ Y+A  +A+ +  D+L++DTAGRL N   LM  + KM ++L R  P APH VL
Sbjct: 304 KSDPASVVYDAVVKARKEDYDILMVDTAGRLQNKVNLMNELSKMKKILTREIPEAPHEVL 363

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNA+ Q +MF      +G+++TK+DGTARGG ++ I     +PV ++G+GE 
Sbjct: 364 LVLDATTGQNAMTQAKMFKETTDVSGIVLTKLDGTARGGIVLAIRSELHLPVKYVGLGEQ 423

Query: 295 INDLEPFVAKDFS 307
           + DL+PF   DF 
Sbjct: 424 VGDLKPFDPNDFV 436


>gi|89256930|ref|YP_514292.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. holarctica LVS]
 gi|290953990|ref|ZP_06558611.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295312609|ref|ZP_06803361.1| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144761|emb|CAJ80096.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. holarctica LVS]
          Length = 331

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 127/316 (40%), Positives = 194/316 (61%), Gaps = 4/316 (1%)

Query: 4   QKVASE--SLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGV 60
           +KV  +        +L  G + T+ K   G++ I+   + +D+ + E++E  L+ +D+GV
Sbjct: 16  EKVQEKDNKKGLFSRLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGV 75

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               +IV  L  K    ++     L   + + + ++++P  KP   D    P VILVVGV
Sbjct: 76  EATDEIVTYLCDKVARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGV 135

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A
Sbjct: 136 NGVGKTTTIGKLTKKLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSA 195

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y A   A++K +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DA
Sbjct: 196 SVIYNAIGSAKSKGIDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDA 255

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTG NAL Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+
Sbjct: 256 TTGGNALNQAEAFNQIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQ 315

Query: 300 PFVAKDFSAVITGCLD 315
            F A+DF+  +    D
Sbjct: 316 VFNARDFTTALFNSND 331


>gi|145640856|ref|ZP_01796438.1| cell division protein FtsY [Haemophilus influenzae R3021]
 gi|145274370|gb|EDK14234.1| cell division protein FtsY [Haemophilus influenzae 22.4-21]
          Length = 399

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 126/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 95  GFFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 154

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P++KP   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 155 EHASRKELQDAELLYQQLKVEMANILEPVAKPLVIDNTKKPYVILMVGVNGVGKTTTIGK 214

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 215 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 274

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 275 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 334

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 335 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 394

Query: 311 T 311
            
Sbjct: 395 F 395


>gi|312174145|emb|CBX82398.1| Cell division protein ftsY homolog [Erwinia amylovora ATCC
           BAA-2158]
          Length = 512

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 124/315 (39%), Positives = 190/315 (60%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV 
Sbjct: 199 AKEQERPGKEGFFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVE 258

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             ++I+  L  +   K +     LY + +  + ++L  +  P +      P VIL+VGVN
Sbjct: 259 TTRRIIGNLTNQASRKQLRDAEALYGLLKTDMAEILAKVEAPLDIS-GKTPFVILMVGVN 317

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A+
Sbjct: 318 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNHIPVVAQHTGADSAS 377

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ VDVLI DTAGRL N + LM  + K+ RV+K+LD  APH V+  +DA+
Sbjct: 378 VIFDAIQAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDAS 437

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL P
Sbjct: 438 TGQNAISQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFTIPIRYIGVGEGIEDLRP 497

Query: 301 FVAKDFSAVITGCLD 315
           F A DF   +    D
Sbjct: 498 FKADDFIEALFARED 512


>gi|325131021|gb|EGC53748.1| signal recognition particle protein [Neisseria meningitidis
           OX99.30304]
          Length = 456

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +    + +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTSRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNQALVELMGKENKTLDLSVA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|319775293|ref|YP_004137781.1| cell division protein FtsY [Haemophilus influenzae F3047]
 gi|317449884|emb|CBY86095.1| cell division protein FtsY [Haemophilus influenzae F3047]
          Length = 414

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 126/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 109 GFFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 168

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P++KP   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 169 EHASRKELQDAELLYQQLKVEMANILEPVAKPLVIDNTKKPYVILMVGVNGVGKTTTIGK 228

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 229 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 288

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 289 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 348

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 349 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 408

Query: 311 T 311
            
Sbjct: 409 F 409


>gi|121635570|ref|YP_975815.1| signal recognition particle protein [Neisseria meningitidis FAM18]
 gi|120867276|emb|CAM11047.1| signal recognition particle protein [Neisseria meningitidis FAM18]
 gi|325137122|gb|EGC59718.1| signal recognition particle protein [Neisseria meningitidis M0579]
          Length = 456

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +    + +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTSRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNQALVELMGKENKTLDLSVA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|148827958|ref|YP_001292711.1| cell division protein FtsY [Haemophilus influenzae PittGG]
 gi|148719200|gb|ABR00328.1| cell division protein FtsY [Haemophilus influenzae PittGG]
          Length = 400

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 124/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 95  GFFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 154

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 155 EHASRKELQDAELLYQQLKVEMADILEPVARPLEIDSTKKPYVILMVGVNGVGKTTTIGK 214

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  V+LAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 215 LARKFQAEGKSVLLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 274

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 275 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 334

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 335 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 394

Query: 311 T 311
            
Sbjct: 395 F 395


>gi|293397906|ref|ZP_06642112.1| signal recognition particle receptor [Neisseria gonorrhoeae F62]
 gi|291611852|gb|EFF40921.1| signal recognition particle receptor [Neisseria gonorrhoeae F62]
          Length = 421

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 184/306 (60%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|207742231|ref|YP_002258623.1| cell division protein [Ralstonia solanacearum IPO1609]
 gi|206593619|emb|CAQ60546.1| cell division protein [Ralstonia solanacearum IPO1609]
          Length = 377

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 178/308 (57%), Gaps = 7/308 (2%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +      W+ +L  G + TS  L    T +    ++D+ + EELE  L+ +D GV   + 
Sbjct: 76  MEQARKGWMSRLRSGLSKTSKSL----TTLFVGVKVDETLFEELETALLMADAGVDATEY 131

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++EL  +   + +     +   + +L+ ++L PL K         P VI++ GVNG GK
Sbjct: 132 LLDELRRRVKTQRIETAESVKTALRDLLVELLHPLEKTMVLGRDQ-PMVIMIAGVNGAGK 190

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL K     G  V+LAAGDTFR+AA +QL IW  R +   V  E   D AA+ ++
Sbjct: 191 TTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQE-SGDPAAVIFD 249

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+A+ +D+++ DTAGRL     LM  + K+ RV+ +    APH  L V+DA TGQN
Sbjct: 250 AVNAARARGIDIVMADTAGRLPTQMHLMEELKKVRRVIGKAMVTAPHETLLVIDANTGQN 309

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A+
Sbjct: 310 ALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAR 369

Query: 305 DFSAVITG 312
           +F+  + G
Sbjct: 370 EFADALLG 377


>gi|158320496|ref|YP_001513003.1| signal recognition particle protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158140695|gb|ABW19007.1| signal recognition particle protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 448

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + KL++    + +  +L +  V E + +    L+ +D+   V +  + ++  +   
Sbjct: 3   FEGLAEKLQDTFKKLKNKGKLTEKDVAEAMREVRLALLEADVNFKVVKDFINKVKERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V+E + +++       N+  S  P +I++VG+ G GKTT  GKL
Sbjct: 63  IEVLESLTPGQQVIKIVNEELTELMGTSQSKINFS-SKPPTIIMLVGLQGAGKTTTTGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L A D +R AAI QL++  ++                ++        +
Sbjct: 122 AGMLKKQGKRPLLIACDIYRPAAIKQLQVVGEKVGVPVFTMGDKQSPVDISKAGIDHGMS 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV++IDTAGRLH +  LM  +  +   +K      PH +L V+D+ TGQ+A+   E 
Sbjct: 182 HGNDVILIDTAGRLHVDEELMDELKDIKNDVK------PHEILLVVDSMTGQDAVNVAEH 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DG  RGG  + +      P+ F G+GE ++DLEPF     ++ I 
Sbjct: 236 FNEKLGIDGVILTKLDGDTRGGAALSVRAVTNKPIKFTGLGEKLDDLEPFYPDRMASRIL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDM 300


>gi|307132203|ref|YP_003884219.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Dickeya dadantii 3937]
 gi|306529732|gb|ADM99662.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Dickeya dadantii 3937]
          Length = 453

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKEQAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV+      Q  +  V   +   +  +++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HDVNKSLTPGQEFVKIVQNELVTAMGEVNQALNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +      KV++ + D +R AAI QL+  A+    DF  SE       +   A + A+
Sbjct: 121 GKFLREKQKKKVLVVSADVYRPAAIKQLETLAETVGVDFFPSEAHEKPIDIVNRALQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDDAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|292489957|ref|YP_003532849.1| cell division protein FtsY [Erwinia amylovora CFBP1430]
 gi|291555396|emb|CBA23808.1| Cell division protein ftsY homolog [Erwinia amylovora CFBP1430]
          Length = 494

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 124/315 (39%), Positives = 190/315 (60%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV 
Sbjct: 181 AKEQERPGKEGFFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVE 240

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             ++I+  L  +   K +     LY + +  + ++L  +  P +      P VIL+VGVN
Sbjct: 241 TTRRIIGNLTNQASRKQLRDAEALYGLLKTDMAEILAKVEAPLDIS-GKTPFVILMVGVN 299

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A+
Sbjct: 300 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNHIPVVAQHTGADSAS 359

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ VDVLI DTAGRL N + LM  + K+ RV+K+LD  APH V+  +DA+
Sbjct: 360 VIFDAIQAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDAS 419

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL P
Sbjct: 420 TGQNAISQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFTIPIRYIGVGEGIEDLRP 479

Query: 301 FVAKDFSAVITGCLD 315
           F A DF   +    D
Sbjct: 480 FKADDFIEALFARED 494


>gi|292900987|ref|YP_003540356.1| cell division protein [Erwinia amylovora ATCC 49946]
 gi|291200835|emb|CBJ47969.1| cell division protein [Erwinia amylovora ATCC 49946]
          Length = 496

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 124/315 (39%), Positives = 190/315 (60%), Gaps = 2/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV 
Sbjct: 183 AKEQERPGKEGFFARLKRSLVKTRTNLGSGFISLFRGKKIDDELFEELEEQLLIADVGVE 242

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             ++I+  L  +   K +     LY + +  + ++L  +  P +      P VIL+VGVN
Sbjct: 243 TTRRIIGNLTNQASRKQLRDAEALYGLLKTDMAEILAKVEAPLDIS-GKTPFVILMVGVN 301

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A+
Sbjct: 302 GVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNHIPVVAQHTGADSAS 361

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ VDVLI DTAGRL N + LM  + K+ RV+K+LD  APH V+  +DA+
Sbjct: 362 VIFDAIQAAKARHVDVLIADTAGRLQNKAHLMEELKKITRVMKKLDDSAPHEVMLTIDAS 421

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGEGI DL P
Sbjct: 422 TGQNAISQTKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFTIPIRYIGVGEGIEDLRP 481

Query: 301 FVAKDFSAVITGCLD 315
           F A DF   +    D
Sbjct: 482 FKADDFIEALFARED 496


>gi|240127274|ref|ZP_04739935.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268685639|ref|ZP_06152501.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268625923|gb|EEZ58323.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 402

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 183/306 (59%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 97  EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 156

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 157 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 216

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 217 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTTGDSAAVCFDA 275

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 276 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNA 335

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 336 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 395

Query: 306 FSAVIT 311
           F   + 
Sbjct: 396 FVDALL 401


>gi|167037689|ref|YP_001665267.1| signal recognition particle protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116104|ref|YP_004186263.1| signal recognition particle protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|326389503|ref|ZP_08211070.1| signal recognition particle protein [Thermoanaerobacter ethanolicus
           JW 200]
 gi|166856523|gb|ABY94931.1| signal recognition particle protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929195|gb|ADV79880.1| signal recognition particle protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|325994508|gb|EGD52933.1| signal recognition particle protein [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 446

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L+E    +    +L +  ++E + +    L+ +D+   V +  +  +  K  
Sbjct: 2   AFESLSERLQEIFKKLRGKGKLTEKDIKEAMREVKVALLEADVNFKVVKDFINSVTEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V++ +  ++       N   +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQEVMESLTPGQQVIKIVNDELIALMGSTQSRLNIG-NKVPAVIMMVGLQGSGKTTACGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G   +L A D  R AAI QL++     +          +   +A  +   A+
Sbjct: 121 LANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVFTMGDKVNPVDIAKASIDYAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   DV+IIDTAGRLH +  LM  +  + + ++      P  +L V+DA TGQ+A+    
Sbjct: 181 SHNSDVIIIDTAGRLHIDEELMEELVNIKKAVQ------PDEILLVVDAMTGQDAVNVAS 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + I    + P+ ++G GE + DLEPF     ++ I
Sbjct: 235 SFNERLDITGVILTKLDGDTRGGAALSIKAVTQKPIKYVGTGEKLTDLEPFYPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|254369795|ref|ZP_04985805.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122754|gb|EDO66883.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 343

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 126/308 (40%), Positives = 190/308 (61%), Gaps = 2/308 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
                 +L  G + T+ K   G++ I+   + +D+ + E++E  L+ +DIGV    +IV 
Sbjct: 36  KKGLFSRLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADIGVEATDEIVT 95

Query: 69  ELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K    ++     L   + + + ++++P  KP   D    P VILVVGVNGVGKTT 
Sbjct: 96  YLRDKVARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGVNGVGKTTT 155

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ Y A  
Sbjct: 156 IGKLTKKLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSASVIYNAIG 215

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A++K +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG NAL 
Sbjct: 216 SAKSKGIDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDATTGGNALN 275

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F A+DF+
Sbjct: 276 QAEAFNQIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQVFNARDFT 335

Query: 308 AVITGCLD 315
             +    D
Sbjct: 336 TALFNSND 343


>gi|319897733|ref|YP_004135930.1| cell division protein ftsy [Haemophilus influenzae F3031]
 gi|329122778|ref|ZP_08251350.1| cell division protein FtsY [Haemophilus aegyptius ATCC 11116]
 gi|317433239|emb|CBY81614.1| cell division protein FtsY [Haemophilus influenzae F3031]
 gi|327472042|gb|EGF17480.1| cell division protein FtsY [Haemophilus aegyptius ATCC 11116]
          Length = 414

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 109 GFFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 168

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 169 EHASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGK 228

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 229 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 288

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 289 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 348

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 349 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 408

Query: 311 T 311
            
Sbjct: 409 F 409


>gi|289578454|ref|YP_003477081.1| signal recognition particle protein [Thermoanaerobacter italicus
           Ab9]
 gi|289528167|gb|ADD02519.1| signal recognition particle protein [Thermoanaerobacter italicus
           Ab9]
          Length = 446

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L+E    +    +L +  ++E + +    L+ +D+   V +  +  +  K  
Sbjct: 2   AFESLSERLQEIFKKLRGKGKLTEKDIKEAMREVKVALLEADVNFKVVKDFINSVTEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V++ +  ++       N   +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQEVMESLTPGQQVIKIVNDELIALMGSTQSRLNIG-NKVPAVIMMVGLQGSGKTTACGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G   +L A D  R AAI QL++     +         ++   +A  +   A+
Sbjct: 121 LANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVFTMGDKANPVDIAKASIDYAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   DV+IIDTAGRLH +  LM  +  + R ++      P  +L V+DA TGQ+A+    
Sbjct: 181 SHNSDVIIIDTAGRLHIDEELMEELVNIKRAVQ------PDEILLVVDAMTGQDAVNVAS 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG  RGG  + I    + P+ ++G GE + DLEPF     ++ I
Sbjct: 235 SFNERLDITGVVLTKLDGDTRGGAALSIKAVTQKPIKYVGTGEKLTDLEPFYPNRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|115315294|ref|YP_764017.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. holarctica OSU18]
 gi|167009994|ref|ZP_02274925.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. holarctica FSC200]
 gi|169656723|ref|YP_001429185.2| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|254368195|ref|ZP_04984215.1| signal recognition particle receptor ftsY [Francisella tularensis
           subsp. holarctica 257]
 gi|115130193|gb|ABI83380.1| signal recognition particle receptor FtsY [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134254005|gb|EBA53099.1| signal recognition particle receptor ftsY [Francisella tularensis
           subsp. holarctica 257]
 gi|164551791|gb|ABU62229.2| signal recognition particle-docking protein FtsY [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 343

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 127/316 (40%), Positives = 194/316 (61%), Gaps = 4/316 (1%)

Query: 4   QKVASE--SLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGV 60
           +KV  +        +L  G + T+ K   G++ I+   + +D+ + E++E  L+ +D+GV
Sbjct: 28  EKVQEKDNKKGLFSRLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGV 87

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               +IV  L  K    ++     L   + + + ++++P  KP   D    P VILVVGV
Sbjct: 88  EATDEIVTYLCDKVARNELQTADKLNQIIQQKLTEIILPCEKPLEVDTQKSPFVILVVGV 147

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A
Sbjct: 148 NGVGKTTTIGKLTKKLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTHVVYQHEGADSA 207

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y A   A++K +DV+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DA
Sbjct: 208 SVIYNAIGSAKSKGIDVVIADTAGRLHNKDNLMQELKKVVKVIKKTDETAPHEIMLVVDA 267

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTG NAL Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+
Sbjct: 268 TTGGNALNQAEAFNQIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQ 327

Query: 300 PFVAKDFSAVITGCLD 315
            F A+DF+  +    D
Sbjct: 328 VFNARDFTTALFNSND 343


>gi|254784500|ref|YP_003071928.1| signal recognition particle-docking protein FtsY [Teredinibacter
           turnerae T7901]
 gi|242667494|gb|ACS93531.1| signal recognition particle-docking protein FtsY [Teredinibacter
           turnerae T7901]
          Length = 334

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 134/310 (43%), Positives = 205/310 (66%), Gaps = 2/310 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVA 63
           +  +E +S+  ++ +G + TS +L  G+  ++  ++ +DD + EE+E LL+ +D+GV   
Sbjct: 23  EKPTEKVSFFTRIKQGLSRTSNQLSGGLASLLLGKKAIDDELLEEIETLLLMADVGVEAT 82

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             I+++L  +   K ++    LY  + + +  +L+ +  P + + + +P VILVVGVNGV
Sbjct: 83  TDIIDDLTARVARKQLADSDALYAALRQSLADLLLDVEAPLDVECAQKPFVILVVGVNGV 142

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+  + G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ 
Sbjct: 143 GKTTTIGKLAKRFQNQGKSVMLAAGDTFRAAAVEQLQVWGERNKVPVVAQHTGADSASVI 202

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + AQA+++DV+I DTAGRLHN S LM  + K+ RV+ +LD  APH VL VLDA TG
Sbjct: 203 YDAVQSAQARQIDVVIADTAGRLHNKSNLMEELAKVKRVMAKLDDSAPHEVLLVLDAGTG 262

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q   F   AG TGL +TK+DGTA+GG +  +   + +PV ++GVGEGI+DL+PF 
Sbjct: 263 QNALSQAGHFKEAAGVTGLALTKLDGTAKGGIIFALSKQYGLPVRYIGVGEGIDDLQPFQ 322

Query: 303 AKDFSAVITG 312
           A  F   + G
Sbjct: 323 ATSFIDALFG 332


>gi|254671537|emb|CBA09153.1| signal recognition particle protein [Neisseria meningitidis
           alpha153]
          Length = 370

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +    + +I    +L +D ++E L +    L+ +D+ + V ++ +  +  K   
Sbjct: 2   LDNLTGRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFINNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|190150667|ref|YP_001969192.1| cell division protein FtsY [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264015|ref|ZP_07545615.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915798|gb|ACE62050.1| cell division protein FtsY-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306870626|gb|EFN02370.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 577

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 196/309 (63%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+  SE   +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+   
Sbjct: 266 QEKPSEG-GFFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTT 324

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            K++  L      K +    +LY  +   + ++L P+S+P   D S +P+VIL+VGVNGV
Sbjct: 325 TKVINNLTQHASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGV 384

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ 
Sbjct: 385 GKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVI 444

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A +K +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TG
Sbjct: 445 FDAMQSAASKGIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTG 504

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF 
Sbjct: 505 QNAISQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFN 564

Query: 303 AKDFSAVIT 311
           A++F   + 
Sbjct: 565 AEEFIEALF 573


>gi|163740777|ref|ZP_02148170.1| signal recognition particle-docking protein FtsY [Phaeobacter
           gallaeciensis 2.10]
 gi|161385768|gb|EDQ10144.1| signal recognition particle-docking protein FtsY [Phaeobacter
           gallaeciensis 2.10]
          Length = 415

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 127/276 (46%), Positives = 192/276 (69%), Gaps = 1/276 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E+LEDLL+ +D+GV  A ++   +   R  K +S + +   ++  + +++ 
Sbjct: 138 RRALDDDMLEQLEDLLVGADMGVDTALRVTANMAEGRLGKRLSTREIKELLAAEVARIME 197

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P    ++ RP V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA++Q
Sbjct: 198 PVARPMPI-YAKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQ 256

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W DR     + +  GSD A+LA++A  +AQ +  D+L+IDTAGRL N + LM  + K
Sbjct: 257 LQVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEEGADLLMIDTAGRLQNRADLMEELAK 316

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV+++ DP APH+ L VLDATTGQNAL QV+ F  +A  +GL+MTK+DGTA+GG L+ 
Sbjct: 317 IVRVIQKKDPSAPHNTLLVLDATTGQNALNQVDTFQKLADVSGLVMTKLDGTAKGGVLVA 376

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +     +P++ +GVGE I+DL PF  +DF+A +TG 
Sbjct: 377 LADRFGLPIHAIGVGEQIDDLAPFDPEDFAAALTGL 412


>gi|167627247|ref|YP_001677747.1| signal recognition particle-docking protein FtsY [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597248|gb|ABZ87246.1| signal recognition particle-docking protein FtsY [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 333

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/309 (40%), Positives = 195/309 (63%), Gaps = 2/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           +          +L  G + T+ K   G++ I+   + +DD + E++E  L+ SD+GV   
Sbjct: 19  QEQDNKKGLFSRLQSGLSKTASKFGSGLSTILMGQKVVDDELLEDIEMQLLTSDVGVEAT 78

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +IVE L  K    ++     L   + + + ++++P  KP   +  + P+VIL+VGVNGV
Sbjct: 79  DEIVEYLRGKVARNELQTVDKLNEIIQDKLTEIILPCQKPLQINHENTPYVILIVGVNGV 138

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W DR +   V  + G+D+A++ 
Sbjct: 139 GKTTTIGKLTKKLQSEGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQKEGADSASVI 198

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A+++ +DV+I DTAGRLHN   LM  + K+++V+K++D  APH  + V+DATTG
Sbjct: 199 YDAISSAKSRGIDVVIADTAGRLHNKDNLMQELKKVVKVIKKVDDSAPHETMLVVDATTG 258

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            NAL Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F 
Sbjct: 259 GNALSQAEAFNEIVNLTGITITKLDGTAKGGIVFSIAKKMGLPLRFIGVGEKIDDLQVFN 318

Query: 303 AKDFSAVIT 311
           AK+F+  + 
Sbjct: 319 AKNFTKALF 327


>gi|332560273|ref|ZP_08414595.1| signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides WS8N]
 gi|332277985|gb|EGJ23300.1| signal recognition particle-docking protein FtsY [Rhodobacter
           sphaeroides WS8N]
          Length = 376

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 128/278 (46%), Positives = 191/278 (68%), Gaps = 1/278 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E LE++LI++D+GV  A ++   +   RY + VS + +   ++  I ++L 
Sbjct: 100 RRILDDAMLESLEEVLIQADMGVETALRVTANIAEGRYGRRVSAREIKEALAAEIARILE 159

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P     S RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++Q
Sbjct: 160 PVARPMPLYPS-RPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQ 218

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W  R     + +  GSD A+LA++A  +AQA+  D+L+IDTAGRL N + LM  + K
Sbjct: 219 LQVWGRRAGVPVLTAPEGSDPASLAFDAMTKAQAEGADLLMIDTAGRLQNRADLMEELSK 278

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV+++ DP APH+ L VLDATTGQNAL QVE+F  +A  +GL+MTK+DGTA+GG L+ 
Sbjct: 279 IVRVIRKKDPDAPHNTLLVLDATTGQNALNQVEIFRKLADVSGLVMTKLDGTAKGGVLVA 338

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +     +P++ +GVGE I+DL PF  ++F+  + G  D
Sbjct: 339 LADRFGLPIHAIGVGEQIDDLAPFDPEEFARALMGLDD 376


>gi|218768922|ref|YP_002343434.1| signal recognition particle protein [Neisseria meningitidis Z2491]
 gi|121052930|emb|CAM09284.1| signal recognition particle protein [Neisseria meningitidis Z2491]
 gi|319411220|emb|CBY91627.1| signal recognition particle protein (fifty-four homolog) [Neisseria
           meningitidis WUE 2594]
          Length = 456

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +    + +I    +L +D ++E L +    L+ +D+ + V ++ +  +  K   
Sbjct: 2   LDNLTGRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFINNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|239999793|ref|ZP_04719717.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae 35/02]
 gi|268595603|ref|ZP_06129770.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae 35/02]
 gi|268548992|gb|EEZ44410.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae 35/02]
 gi|317165080|gb|ADV08621.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 456

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVSLPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   S  P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNQALVELMGKENKTLDLSVS-PPAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +  V+       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLNGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|296314847|ref|ZP_06864788.1| signal recognition particle protein [Neisseria polysaccharea ATCC
           43768]
 gi|296838348|gb|EFH22286.1| signal recognition particle protein [Neisseria polysaccharea ATCC
           43768]
          Length = 456

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +    + +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTSRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNQALVELMGKENKTLDLSVA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLIVDTAGRLAIDEEMMNEIKDLHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|238028676|ref|YP_002912907.1| Signal recognition particle-docking protein FtsY [Burkholderia
           glumae BGR1]
 gi|237877870|gb|ACR30203.1| Signal recognition particle-docking protein FtsY [Burkholderia
           glumae BGR1]
          Length = 389

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 129/304 (42%), Positives = 183/304 (60%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G + TS  L    T++  + R+DD + EELE  L+ SD G+   + ++  
Sbjct: 92  KKSWIARLRSGLSKTSTSL----TNVFVNTRIDDELYEELEAALLMSDAGIDATEYLLGA 147

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A+ +S    +   +  L+  +L PL K      +  P V+++ GVNG GKTT I
Sbjct: 148 LREKVRAERLSDPLQVKAALRALLVDLLAPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSI 206

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 207 GKLAKHLQRFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVGA 265

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 266 ARARKIDVVMADTAGRLPTQLHLMEELRKVKRVIGKAQSDAPHEVLLVIDANTGQNALAQ 325

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DL+PF A++F+ 
Sbjct: 326 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFNAEEFAD 385

Query: 309 VITG 312
            + G
Sbjct: 386 ALLG 389


>gi|229844636|ref|ZP_04464775.1| cell division protein FtsY [Haemophilus influenzae 6P18H1]
 gi|229812350|gb|EEP48040.1| cell division protein FtsY [Haemophilus influenzae 6P18H1]
          Length = 400

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 126/301 (41%), Positives = 189/301 (62%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 95  GFFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 154

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P++KP   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 155 EHASRKELQDAELLYQQLKVEMANILEPVAKPLVIDNTKKPYVILMVGVNGVGKTTTIGK 214

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 215 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 274

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K+ RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 275 ARNIDILIADTAGRLQNKNNLMDELKKIARVMKKYDETAPHEIMLTLDAGTGQNAISQAK 334

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 335 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 394

Query: 311 T 311
            
Sbjct: 395 F 395


>gi|258511333|ref|YP_003184767.1| signal recognition particle protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478059|gb|ACV58378.1| signal recognition particle protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 479

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 152/304 (50%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S  L+     +    RL     D    E+   L+ +D+ V V +  V+ +  +   
Sbjct: 2   FESLSNNLQAVFQRLRGRGRLTEADVDEAMREIRRALLAADVNVKVVRDFVDRVRARAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V E + +++              P V+++VG+ G GKTT   KL
Sbjct: 62  QDVLKSLTPGQQVVKIVYEELTELMGGSQARIRM-APKPPTVVMLVGLQGAGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        + +L A D +R AA+DQLK+   +        + G+ A  +A    + A+ 
Sbjct: 121 ALAFHQQNHRPLLVAADVYRPAAVDQLKVLGAQIDVPVFSLD-GAGAVEIAEAGLRDAER 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV+I+DTAGRLH +  LMA +  M ++L+      PH +L V+DA TGQ+A+   E 
Sbjct: 180 RGADVVIVDTAGRLHIDDALMAELESMKKILE------PHEILLVVDAMTGQDAVHVAEA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     TG+I+TK+DG ARGG  + +      P+ F+G+GE I  LEPF  +  ++ I 
Sbjct: 234 FHQRLEVTGVILTKLDGDARGGAALTVRAATGCPIKFVGMGEKIEPLEPFHPERMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|194099661|ref|YP_002002796.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           NCCP11945]
 gi|240015638|ref|ZP_04722178.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           FA6140]
 gi|240114036|ref|ZP_04728526.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           MS11]
 gi|268600099|ref|ZP_06134266.1| signal recognition particle protein [Neisseria gonorrhoeae MS11]
 gi|193934951|gb|ACF30775.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           NCCP11945]
 gi|268584230|gb|EEZ48906.1| signal recognition particle protein [Neisseria gonorrhoeae MS11]
 gi|317165145|gb|ADV08686.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 417

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 183/306 (59%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTTGDSAAVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 291 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNA 350

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 351 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 410

Query: 306 FSAVIT 311
           F   + 
Sbjct: 411 FVDALL 416


>gi|251788621|ref|YP_003003342.1| signal recognition particle protein [Dickeya zeae Ech1591]
 gi|247537242|gb|ACT05863.1| signal recognition particle protein [Dickeya zeae Ech1591]
          Length = 453

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKEQAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  +++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVQNELVAAMGEVNQALNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +      KV++ + D +R AAI QL+  A     DF  SE       +   A + A+
Sbjct: 121 GKFLREKQKKKVLVVSADVYRPAAIKQLETLAQTVGVDFFPSEAHEKPIDIVNRALQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDDAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|194099592|ref|YP_002002723.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae NCCP11945]
 gi|240014949|ref|ZP_04721862.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           DGI18]
 gi|240113818|ref|ZP_04728308.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           MS11]
 gi|240116552|ref|ZP_04730614.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           PID18]
 gi|240122018|ref|ZP_04734980.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           PID24-1]
 gi|240124316|ref|ZP_04737272.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           PID332]
 gi|240126527|ref|ZP_04739413.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|254494575|ref|ZP_05107746.1| signal recognition particle protein [Neisseria gonorrhoeae 1291]
 gi|268599887|ref|ZP_06134054.1| signal recognition particle protein [Neisseria gonorrhoeae MS11]
 gi|268602222|ref|ZP_06136389.1| signal recognition particle protein [Neisseria gonorrhoeae PID18]
 gi|268682943|ref|ZP_06149805.1| signal recognition particle protein [Neisseria gonorrhoeae PID332]
 gi|268685108|ref|ZP_06151970.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|19568856|gb|AAL91941.1|AF482013_1 signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae]
 gi|193934882|gb|ACF30706.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae NCCP11945]
 gi|226513615|gb|EEH62960.1| signal recognition particle protein [Neisseria gonorrhoeae 1291]
 gi|268584018|gb|EEZ48694.1| signal recognition particle protein [Neisseria gonorrhoeae MS11]
 gi|268586353|gb|EEZ51029.1| signal recognition particle protein [Neisseria gonorrhoeae PID18]
 gi|268623227|gb|EEZ55627.1| signal recognition particle protein [Neisseria gonorrhoeae PID332]
 gi|268625392|gb|EEZ57792.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-92-679]
          Length = 456

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   S  P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNQALVELMGKENKTLDLSVS-PPAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +  V+       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLNGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|212211681|ref|YP_002302617.1| cell division protein [Coxiella burnetii CbuG_Q212]
 gi|212010091|gb|ACJ17472.1| cell division protein [Coxiella burnetii CbuG_Q212]
          Length = 324

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 191/312 (61%), Gaps = 4/312 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
            N + +     W+ +L +    T  +L +G++++ +  + +D  + EELE +L+ +DIG+
Sbjct: 13  KNNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGI 72

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              Q I+  L  +   K +S  + L D  +  +  +L P  K      S  P VIL VGV
Sbjct: 73  EATQSILNNLSQQVARKSLSDPKALIDALKIELLNILGPCQKHLEISAS--PFVILTVGV 130

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT I KL+        +V+LAAGDTFR+AAI+QL+ W  R +A  +  + G+D+A
Sbjct: 131 NGVGKTTTIAKLAHFYQSQKKRVILAAGDTFRAAAIEQLQTWGQRNNAPVIAQQPGADSA 190

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+A + A A+  D+LI DTAGRLH  S LM  + K+ RV+K+++P APH  L VLDA
Sbjct: 191 SVIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDA 250

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q E FH   G TG+ +TK+DGTA+GG +  I    ++P+ F+G+GE I DL+
Sbjct: 251 GTGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLK 310

Query: 300 PFVAKDFSAVIT 311
           PF AK+F A + 
Sbjct: 311 PFNAKEFIAALF 322


>gi|325205379|gb|ADZ00832.1| signal recognition particle protein [Neisseria meningitidis
           M04-240196]
          Length = 456

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +    + +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVVGSLTPDQAFIGVVNKALTELMGRENKTLDLSVA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|240013197|ref|ZP_04720110.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           DGI18]
 gi|240081753|ref|ZP_04726296.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           FA19]
 gi|240114730|ref|ZP_04728792.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           PID18]
 gi|240116929|ref|ZP_04730991.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           PID1]
 gi|240120269|ref|ZP_04733231.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           PID24-1]
 gi|240122570|ref|ZP_04735526.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           PID332]
 gi|254492789|ref|ZP_05105960.1| signal recognition particle protein [Neisseria gonorrhoeae 1291]
 gi|260441459|ref|ZP_05795275.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           DGI2]
 gi|268597852|ref|ZP_06132019.1| signal recognition particle protein [Neisseria gonorrhoeae FA19]
 gi|268600381|ref|ZP_06134548.1| signal recognition particle protein [Neisseria gonorrhoeae PID18]
 gi|268602610|ref|ZP_06136777.1| signal recognition particle protein [Neisseria gonorrhoeae PID1]
 gi|268681160|ref|ZP_06148022.1| signal recognition particle protein [Neisseria gonorrhoeae PID332]
 gi|291044820|ref|ZP_06570529.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|226511829|gb|EEH61174.1| signal recognition particle protein [Neisseria gonorrhoeae 1291]
 gi|268551640|gb|EEZ46659.1| signal recognition particle protein [Neisseria gonorrhoeae FA19]
 gi|268584512|gb|EEZ49188.1| signal recognition particle protein [Neisseria gonorrhoeae PID18]
 gi|268586741|gb|EEZ51417.1| signal recognition particle protein [Neisseria gonorrhoeae PID1]
 gi|268621444|gb|EEZ53844.1| signal recognition particle protein [Neisseria gonorrhoeae PID332]
 gi|291011714|gb|EFE03710.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 417

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 183/306 (59%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTTGDSAAVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 291 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNA 350

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 351 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 410

Query: 306 FSAVIT 311
           F   + 
Sbjct: 411 FVDALL 416


>gi|194466489|ref|ZP_03072476.1| signal recognition particle protein [Lactobacillus reuteri 100-23]
 gi|194453525|gb|EDX42422.1| signal recognition particle protein [Lactobacillus reuteri 100-23]
          Length = 481

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  +    ++ +  +RE   E+   L+ +D+   V +  V+ +  K  
Sbjct: 2   AFEGLTDRLQKAMEKLRRKPKVTEADLRETMREIRLALLEADVNFKVVKDFVKTVREKAA 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + K++   + P N    H P VI++VG+ G GKTT  GK
Sbjct: 62  GAEVLKGLNPAQQIVKIVNDELTKLMGEEAVPLN-KAPHIPTVIMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++ +    + M  A D +R AAI QL+  AD+            D   +  E  + A
Sbjct: 121 LALRLKNENHARPMFIAADVYRPAAITQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +IIDTAGRL  +  LM  +  +  ++       P+ +L V+D+ TGQNA+   
Sbjct: 181 KKNHNDYVIIDTAGRLQIDEQLMDELANIKELVN------PNEILLVIDSMTGQNAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 235 QGFDDKLNITGVILTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|322513516|ref|ZP_08066617.1| cell division protein FtsY [Actinobacillus ureae ATCC 25976]
 gi|322120669|gb|EFX92560.1| cell division protein FtsY [Actinobacillus ureae ATCC 25976]
          Length = 575

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 196/309 (63%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+  SE   +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+   
Sbjct: 264 QEKPSEG-GFFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLIADLGMPTT 322

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L      + +    +LY  +   + ++L P+S+P   D S +P+VIL+VGVNGV
Sbjct: 323 TKIINSLTQHATKQQLKDADLLYQQLKVELGEVLKPVSQPLEIDTSKKPYVILMVGVNGV 382

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ 
Sbjct: 383 GKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVI 442

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A +K +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TG
Sbjct: 443 FDAMQSAASKGIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTG 502

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF 
Sbjct: 503 QNAISQAKLFNEAVGLTGITLTKLDGTAKGGMIFAIADQFNIPIRFIGVGEKIEDLRPFN 562

Query: 303 AKDFSAVIT 311
           A++F   + 
Sbjct: 563 AEEFIEALF 571


>gi|148544379|ref|YP_001271749.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Lactobacillus reuteri DSM 20016]
 gi|184153743|ref|YP_001842084.1| signal recognition particle protein [Lactobacillus reuteri JCM
           1112]
 gi|227363196|ref|ZP_03847330.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus reuteri
           MM2-3]
 gi|325682699|ref|ZP_08162215.1| signal recognition particle protein [Lactobacillus reuteri MM4-1A]
 gi|148531413|gb|ABQ83412.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Lactobacillus reuteri DSM 20016]
 gi|183225087|dbj|BAG25604.1| signal recognition particle protein [Lactobacillus reuteri JCM
           1112]
 gi|227071802|gb|EEI10091.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus reuteri
           MM2-3]
 gi|324977049|gb|EGC14000.1| signal recognition particle protein [Lactobacillus reuteri MM4-1A]
          Length = 481

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  +    ++ +  +RE   E+   L+ +D+   V +  V+ +  K  
Sbjct: 2   AFEGLTDRLQKAMEKLRRKPKVTEADLRETMREIRLALLEADVNFKVVKDFVKTVREKAA 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + K++   + P N    H P VI++VG+ G GKTT  GK
Sbjct: 62  GAEVLKGLNPAQQIVKIVNDELTKLMGEEAVPLN-KAPHIPTVIMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++ +    + M  A D +R AAI QL+  AD+            D   +  E  + A
Sbjct: 121 LALRLKNENHARPMFIAADVYRPAAITQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D +IIDTAGRL  +  LM  +  +  ++       P+ +L V+D+ TGQNA+   
Sbjct: 181 QKNHNDYVIIDTAGRLQIDEQLMDELANIKELVN------PNEILLVIDSMTGQNAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 235 QGFDDKLDITGVILTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|167040350|ref|YP_001663335.1| signal recognition particle protein [Thermoanaerobacter sp. X514]
 gi|256750717|ref|ZP_05491602.1| signal recognition particle protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914434|ref|ZP_07131750.1| signal recognition particle protein [Thermoanaerobacter sp. X561]
 gi|307724330|ref|YP_003904081.1| signal recognition particle protein [Thermoanaerobacter sp. X513]
 gi|166854590|gb|ABY92999.1| signal recognition particle protein [Thermoanaerobacter sp. X514]
 gi|256750300|gb|EEU63319.1| signal recognition particle protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889369|gb|EFK84515.1| signal recognition particle protein [Thermoanaerobacter sp. X561]
 gi|307581391|gb|ADN54790.1| signal recognition particle protein [Thermoanaerobacter sp. X513]
          Length = 446

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L+E    +    +L +  ++E + +    L+ +D+   V +  +  +  K  
Sbjct: 2   AFESLSERLQEIFKKLRGKGKLTEKDIKEAMREVKVALLEADVNFKVVKDFINSVTEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V++ +  ++       N   +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQEVMESLTPGQQVIKIVNDELIALMGSTQSRLNIG-NKVPAVIMMVGLQGSGKTTACGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G   +L A D  R AAI QL++     +          +   +A  +   A+
Sbjct: 121 LANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVFTMGDKVNPVDIAKASIDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   DV+IIDTAGRLH +  LM  +  + + ++      P  +L V+DA TGQ+A+    
Sbjct: 181 SHNSDVIIIDTAGRLHVDEELMEELVNIKKAVQ------PDEILLVVDAMTGQDAVNVAS 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+A    TG+I+TK+DG  RGG  + I    + P+ ++G GE + DLEPF     ++ I
Sbjct: 235 SFNARLDITGVILTKLDGDTRGGAALSIKAVTQKPIKYIGTGEKLTDLEPFYPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|59802021|ref|YP_208733.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           FA 1090]
 gi|59718916|gb|AAW90321.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           FA 1090]
          Length = 456

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   S  P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNQALVELMGKENKTLDLSVS-PPAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +  V+       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLNGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|260439687|ref|ZP_05793503.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae DGI2]
 gi|291042929|ref|ZP_06568670.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae DGI2]
 gi|291013363|gb|EFE05329.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae DGI2]
          Length = 456

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   S  P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNQALVELMGKENKTLDLSVS-PPAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +  V+       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLNGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|29655188|ref|NP_820880.1| cell division protein [Coxiella burnetii RSA 493]
 gi|154706782|ref|YP_001423641.1| cell division protein [Coxiella burnetii Dugway 5J108-111]
 gi|29542460|gb|AAO91394.1| cell division protein [Coxiella burnetii RSA 493]
 gi|154356068|gb|ABS77530.1| cell division protein [Coxiella burnetii Dugway 5J108-111]
          Length = 324

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 129/312 (41%), Positives = 191/312 (61%), Gaps = 4/312 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
            N + +     W+ +L +    T  +L +G++++ +  + +D  + EELE +L+ +DIG+
Sbjct: 13  KNNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGI 72

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              Q I+  L  +   K +S  + L D  +  +  +L P  K      S  P VIL VGV
Sbjct: 73  EATQSILNNLSQQVARKSLSDPKALIDALKIELLNILEPCQKHLEISAS--PFVILTVGV 130

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT I KL+        +VMLAAGDTFR+AAI+QL+ W  R +A  +  + G+D+A
Sbjct: 131 NGVGKTTTIAKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVIAQQPGADSA 190

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+A + A A+  D+LI DTAGRLH  S LM  + K+ RV+K+++P APH  L VLDA
Sbjct: 191 SVIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDA 250

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q E FH   G TG+ +TK+DGTA+GG +  I    ++P+ F+G+GE I DL+
Sbjct: 251 GTGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLK 310

Query: 300 PFVAKDFSAVIT 311
           PF AK+F A + 
Sbjct: 311 PFNAKEFIAALF 322


>gi|296284752|ref|ZP_06862750.1| signal recognition particle-docking protein FtsY [Citromicrobium
           bathyomarinum JL354]
          Length = 313

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 136/301 (45%), Positives = 189/301 (62%), Gaps = 3/301 (0%)

Query: 15  RKLTKGFASTSLKLKEGITDI---ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +L  GF  TS +L E I  +     + RLDD   +E+ED LI SD+G   A ++ E L 
Sbjct: 11  DRLLGGFRKTSDRLSENIAPVSQTRGNTRLDDATLDEIEDALIMSDLGPEAAGRVREALR 70

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +R+  +++ +++   V++ I  +L P++KP       RP VILV+GVNG GKTT I KL
Sbjct: 71  EQRFGAEITERQLREAVADEIAAILRPVAKPLEVTAFPRPQVILVIGVNGSGKTTTIAKL 130

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +    +   +VMLAAGDTFR+AAI QL+ WADR     V    G D A++ ++A K+   
Sbjct: 131 AHLFMEDDYEVMLAAGDTFRAAAIGQLQTWADRVGVPLVRGPEGGDPASIVFDAVKRGTD 190

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D LI+DTAGRL N   LM  + K+ +VL RL+P APH V+ VLDAT GQNAL Q+++
Sbjct: 191 EGTDALIVDTAGRLQNKRELMDELAKIRKVLGRLNPEAPHDVVLVLDATNGQNALSQIDV 250

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  VAG TGLIMTK+DGTARGG L+     + +P++ +GVGE ++DL PF     + VI 
Sbjct: 251 FQEVAGVTGLIMTKLDGTARGGILVAAAQKYGLPIHAIGVGEQLDDLRPFDPDLVARVIA 310

Query: 312 G 312
           G
Sbjct: 311 G 311


>gi|240126587|ref|ZP_04739473.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268685164|ref|ZP_06152026.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-92-679]
 gi|268625448|gb|EEZ57848.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-92-679]
          Length = 417

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 183/306 (59%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTAGDSAAVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 291 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNA 350

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 351 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 410

Query: 306 FSAVIT 311
           F   + 
Sbjct: 411 FVDALL 416


>gi|165976771|ref|YP_001652364.1| cell division protein [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|165876872|gb|ABY69920.1| cell division protein [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 573

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 195/309 (63%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+  SE   +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+   
Sbjct: 262 QEKPSEG-GFFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTT 320

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            K++  L      K +    +LY  +   + ++L P+S+P   D S +P+VIL+VGVNGV
Sbjct: 321 TKVINNLTQHASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGV 380

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ 
Sbjct: 381 GKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVI 440

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A +K +D+LI DTAGRL N + LM  + K++RV K+ D  APH ++  LDA TG
Sbjct: 441 FDAMQSAASKGIDILIADTAGRLQNKNNLMDELKKIVRVTKKYDESAPHEIMLTLDAGTG 500

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF 
Sbjct: 501 QNAISQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFN 560

Query: 303 AKDFSAVIT 311
           A++F   + 
Sbjct: 561 AEEFIEALF 569


>gi|145632121|ref|ZP_01787856.1| cell division protein [Haemophilus influenzae 3655]
 gi|144987028|gb|EDJ93558.1| cell division protein [Haemophilus influenzae 3655]
          Length = 405

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 100 GFFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 159

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 160 EHASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGK 219

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 220 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 279

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 280 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 339

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 340 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 399

Query: 311 T 311
            
Sbjct: 400 F 400


>gi|119475398|ref|ZP_01615751.1| signal recognition particle receptor FtsY [marine gamma
           proteobacterium HTCC2143]
 gi|119451601|gb|EAW32834.1| signal recognition particle receptor FtsY [marine gamma
           proteobacterium HTCC2143]
          Length = 398

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 130/307 (42%), Positives = 195/307 (63%), Gaps = 2/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQK 65
                 +  +L +G   T+     G+  +    + +D+ + EELE  L+ +D+GV   + 
Sbjct: 89  GDSKAGFFLRLKQGLKRTTDGFSSGMGTLFLGKKEIDEELLEELETQLLIADVGVEATRD 148

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I+E L  +   ++++  + LY  + + + ++L    +P   D + +P+VILVVGVNGVGK
Sbjct: 149 IMETLAKQVSRRELADPQALYRGLQKELAELLEHSREPLQIDETKKPYVILVVGVNGVGK 208

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL K+    G  VMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ ++
Sbjct: 209 TTTIGKLGKRFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIFD 268

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + AQA+KVDVLI DTAGRLHN   LM  + K++RV+ +LD  APH V+ VLDA TGQN
Sbjct: 269 AVQAAQARKVDVLIADTAGRLHNKDNLMEELKKVVRVMGKLDSTAPHEVMLVLDAGTGQN 328

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F  V G TG+ +TK+DGTA+GG +  I    ++P+ F+GVGE I+DL PF A 
Sbjct: 329 ALSQAKAFQEVVGVTGITVTKLDGTAKGGIIFAISKQLQLPIRFIGVGEQIDDLRPFAAD 388

Query: 305 DFSAVIT 311
           DF A + 
Sbjct: 389 DFVAALF 395


>gi|240081539|ref|ZP_04726082.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae FA19]
 gi|240118776|ref|ZP_04732838.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae PID1]
 gi|240128989|ref|ZP_04741650.1| Signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268597635|ref|ZP_06131802.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae FA19]
 gi|268604488|ref|ZP_06138655.1| signal recognition particle protein [Neisseria gonorrhoeae PID1]
 gi|268687370|ref|ZP_06154232.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268551423|gb|EEZ46442.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria gonorrhoeae FA19]
 gi|268588619|gb|EEZ53295.1| signal recognition particle protein [Neisseria gonorrhoeae PID1]
 gi|268627654|gb|EEZ60054.1| signal recognition particle protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 456

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVSLPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   S  P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNQALVELMGKENKTLDLSVS-PPAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +  V+       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLNGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|187927348|ref|YP_001897835.1| signal recognition particle-docking protein FtsY [Ralstonia
           pickettii 12J]
 gi|309779951|ref|ZP_07674705.1| signal recognition particle-docking protein FtsY [Ralstonia sp.
           5_7_47FAA]
 gi|187724238|gb|ACD25403.1| signal recognition particle-docking protein FtsY [Ralstonia
           pickettii 12J]
 gi|308921310|gb|EFP66953.1| signal recognition particle-docking protein FtsY [Ralstonia sp.
           5_7_47FAA]
          Length = 394

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 178/308 (57%), Gaps = 7/308 (2%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +      W+ +L  G + TS    +G+T +    ++D+ + EELE  L+ +D GV   + 
Sbjct: 93  IEQARKGWMSRLRSGLSKTS----KGLTTLFVGVKVDEALFEELETALLMADAGVDATEY 148

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++ EL  +  A+ +     +   + +L+ ++L PL K         P VI++ GVNG GK
Sbjct: 149 LLGELRRRIKAQRIETAEGVKTALRDLLVELLHPLEKTMVLGREQ-PMVIMIAGVNGAGK 207

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL K     G  V+LAAGDTFR+AA +QL IW  R +   V  E   D AA+ ++
Sbjct: 208 TTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQE-SGDPAAVIFD 266

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+A+ +D+++ DTAGRL     LM  + K+ RV  +    APH  L V+D  TGQN
Sbjct: 267 AVNAARARGIDIVMADTAGRLPTQLHLMEELKKVRRVTAKAMATAPHETLLVIDGNTGQN 326

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A+
Sbjct: 327 ALAQVKAFDEALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAR 386

Query: 305 DFSAVITG 312
           +F+  + G
Sbjct: 387 EFADALLG 394


>gi|327483374|gb|AEA77781.1| Signal recognition particle, subunit Ffh SRP54 [Vibrio cholerae
           LMA3894-4]
          Length = 475

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V  +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V + +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A+    DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSSPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|147678059|ref|YP_001212274.1| signal recognition particle GTPase [Pelotomaculum thermopropionicum
           SI]
 gi|146274156|dbj|BAF59905.1| signal recognition particle GTPase [Pelotomaculum thermopropionicum
           SI]
          Length = 450

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA  S +L+E    +    RL +        E+   L+ +D+   V +  +  +  K   
Sbjct: 3   FAGLSERLQETFRKLRGKGRLTEADVNEALREVRMALLEADVNFKVVKDFIARIKEKAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++       Q V+  V   +  ++   +   N      P VI++VG+NG GKTT   KL
Sbjct: 63  QELIESLNPAQHVVKVVHGELVALMGGSNSKINM-APKPPTVIMMVGLNGAGKTTTSAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L A D +R AA+ QL++  ++          G +  ++   A + A  
Sbjct: 122 ANYLRKQGRRPLLVAADVYRPAAVKQLQVLGEQLGIPVFADGTGKEPVSIGLAAAESAVT 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGR   N  LMA +  M   +       PH VL V+DA TGQ A+   E 
Sbjct: 182 GGRDVVIIDTAGRQEVNEELMAELEAMKEAI------RPHEVLLVVDAMTGQAAVGVAET 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F++  G  G+I+TK+DG  RGG  + +      P+ F G+GE ++ LEPF     +  I 
Sbjct: 236 FNSRLGLDGVILTKLDGDTRGGAALSVRAVTGKPIKFAGLGEKLDALEPFHPDRMAERIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|33152972|ref|NP_874325.1| signal recognition particle protein [Haemophilus ducreyi 35000HP]
 gi|33149197|gb|AAP96714.1| signal recognition particle protein [Haemophilus ducreyi 35000HP]
          Length = 450

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  L  V   +   +   ++  N   S  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVNKSLTPGQEFLKIVQSELESAMGEANEELNL-ASQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+  + DF  +E       +A EA K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAESLNVDFFPTETNQQPTVIAQEALKYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH ++ +MA I ++ ++L       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHIDTDMMAEIQQLHQLLN------PVETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|239999853|ref|ZP_04719777.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           35/02]
 gi|268595664|ref|ZP_06129831.1| signal recognition particle protein [Neisseria gonorrhoeae 35/02]
 gi|268549053|gb|EEZ44471.1| signal recognition particle protein [Neisseria gonorrhoeae 35/02]
          Length = 417

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 183/306 (59%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNITVI-SQTTGDSAAVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 291 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNA 350

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 351 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 410

Query: 306 FSAVIT 311
           F   + 
Sbjct: 411 FVDALL 416


>gi|323697659|ref|ZP_08109571.1| signal recognition particle-docking protein FtsY [Desulfovibrio sp.
           ND132]
 gi|323457591|gb|EGB13456.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           desulfuricans ND132]
          Length = 463

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 118/300 (39%), Positives = 186/300 (62%), Gaps = 5/300 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             KL++G + T  ++ + I  ++S+   L+D   EE E++LI +D+G+  A +++  L  
Sbjct: 166 FLKLSEGISKTREQITKRIDGLLSAHSSLNDDFWEEFEEILIMADVGMEAAGQLMANLKA 225

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +             D  +++   L  + K P      + P V++++GVNGVGKTT I KL
Sbjct: 226 RARKAGTDNPD---DFKDILRAELEDIFKVPKRIKAVNPPEVLMMIGVNGVGKTTTIAKL 282

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KV++AAGDTFR+AAIDQL++WADR    F     GSD AA+A+EA  +A +
Sbjct: 283 AYRAQMQGRKVLIAAGDTFRAAAIDQLRVWADRLGTGFYAKAEGSDPAAVAFEAMDKAVS 342

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+L++DTAGRLH  S LM  + K+ RV+ +    APH  + V+DATTGQNAL Q ++
Sbjct: 343 EGYDLLLLDTAGRLHTKSNLMDELTKIKRVVGKKHEGAPHRNVLVIDATTGQNALSQTKL 402

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G   +I+TK+DGTA+GG ++ + + +K+P+ F+G+GE + DL PF  KDF+  + 
Sbjct: 403 FNQAVGVDEIILTKLDGTAKGGVVVAVTLQNKLPITFVGLGEKMEDLRPFDGKDFAKALL 462


>gi|226313207|ref|YP_002773101.1| cell division protein FtsY [Brevibacillus brevis NBRC 100599]
 gi|226096155|dbj|BAH44597.1| probable cell division protein FtsY [Brevibacillus brevis NBRC
           100599]
          Length = 335

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 133/319 (41%), Positives = 195/319 (61%), Gaps = 6/319 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  +S    +K T G A T   L E + D++   +++DD   +ELE++LI SD+GV    
Sbjct: 11  IVQKSEEVTQKFTDGLAKTRDLLVEKVEDLVRRYKKIDDDFFDELEEILITSDVGVNTVM 70

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKML---MPLSKPFNWDFSHRPHVILVVGVN 120
           +++++L  +   + +     L   +SE +  +L          N +   R +VIL VGVN
Sbjct: 71  ELIDDLRIEVRKQKIENAIDLQPILSEKLVALLKNDDAADTALNVE-DGRLNVILFVGVN 129

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++        KV+LAAGDTFR+AAI+QL++W +R   D +  + GSD AA
Sbjct: 130 GVGKTTTIGKMAHMFKQQDKKVLLAAGDTFRAAAIEQLEVWGERVGVDVIKQQQGSDPAA 189

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A + A++++VDVL+ DTAGRL N   LM  + K+ RVL+R  P APH VL VLDAT
Sbjct: 190 VIYDAIQAAKSRQVDVLLCDTAGRLQNKVNLMEELAKVHRVLQRELPGAPHEVLLVLDAT 249

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q + F   AG TGL++TK+DGTA+GG +I I     IPV ++G+GE ++DL+ 
Sbjct: 250 TGQNALSQAKTFGQSAGVTGLVLTKLDGTAKGGIVIAIRNELNIPVKYVGLGERMDDLQQ 309

Query: 301 FVAKDFSAVITGCLDYGEE 319
           F  + F   +   L   +E
Sbjct: 310 FDPEQFVHALFAGLIQKDE 328


>gi|160872800|ref|ZP_02062932.1| signal recognition particle-docking protein FtsY [Rickettsiella
           grylli]
 gi|159121599|gb|EDP46937.1| signal recognition particle-docking protein FtsY [Rickettsiella
           grylli]
          Length = 329

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 192/303 (63%), Gaps = 2/303 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           ++ ++      T  +  E +  +    +++D  + +E+ DLL+ +D+G  V + I++ L 
Sbjct: 16  FLYRIKNSLLKTRHQFTENLAHLLFGKKKIDAELIDEIVDLLLMADVGSTVTEAIIQRLT 75

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K     ++  +V++DV  + + ++L P   P   D +H+P VILVVGVNGVGKTT IGK
Sbjct: 76  VKLERNHLTDGQVIWDVLKQQLGELLQPCEAPLMIDSTHKPMVILVVGVNGVGKTTSIGK 135

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G KVMLAAGDTFR+AA +QL IWA+R     +    G+D+A++ Y+AF+ A+
Sbjct: 136 LAYYLKKQGKKVMLAAGDTFRAAATEQLTIWAERNQIPIIAQHQGADSASVIYDAFQAAK 195

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DVLI DTAGR H  + LM  + K+ +V+ +LD  APH ++ +LDA TGQNAL Q +
Sbjct: 196 ARNIDVLIADTAGRFHTKNNLMQELQKIKKVMGKLDVSAPHEIMLILDANTGQNALMQAQ 255

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +FH   G TGL++TK+DGTA+GG +  I     +P+ F+G+GE ++D+  F AK+F   +
Sbjct: 256 VFHEALGLTGLMLTKLDGTAKGGVIFAIAEKLGLPIRFVGLGEAMSDIHVFSAKEFVEAL 315

Query: 311 TGC 313
              
Sbjct: 316 FSL 318


>gi|172057910|ref|YP_001814370.1| signal recognition particle protein [Exiguobacterium sibiricum
           255-15]
 gi|171990431|gb|ACB61353.1| signal recognition particle protein [Exiguobacterium sibiricum
           255-15]
          Length = 450

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 148/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    ++ +  V+E   E+   L+ +D+   V ++ V ++  +  
Sbjct: 2   AFEGLSERLQASLAKMRGKGKISEADVKEMMREVRLALLEADVNFKVVKQFVNDVKERAV 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V + + K++     P     +  P VI++ G+ G GKTT +GK
Sbjct: 62  GQDVMTSLTPGQQVVKIVHDELTKLMGSEVSPLTLS-NRPPTVIMMTGLQGAGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +        +L A D +R AAI QL+    +                +   A   A
Sbjct: 121 LANHLRKKQNRSPLLVAADIYRPAAIKQLETLGKQLELPVFSMGDQVSPQEIVTNALDYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D+++IDTAGRLH +  LM  +  +  + K      P+ +  V+D+ TGQ+A+   
Sbjct: 181 KEHHHDIVLIDTAGRLHIDEDLMQELVDVKEIAK------PNEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F+G+GE ++ +EPF  +  ++ 
Sbjct: 235 QSFNEKLGVTGVVLTKLDGDTRGGAALSIKAVTGAPIKFVGLGEKLDAIEPFYPERMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|88705467|ref|ZP_01103178.1| signal recognition particle-docking protein FtsY [Congregibacter
           litoralis KT71]
 gi|88700557|gb|EAQ97665.1| signal recognition particle-docking protein FtsY [Congregibacter
           litoralis KT71]
          Length = 341

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 128/302 (42%), Positives = 186/302 (61%), Gaps = 3/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  +L +G   TS  L  G  ++    + +D  + EELE  L+ +D+G+    +I+E L
Sbjct: 38  GFFGRLKRGLGRTSDSLAAGFGNLFLGRKTIDAELLEELESQLLIADVGIEATSEIIEHL 97

Query: 71  LTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   K++S    L   + E +  +L+P  + F+      P VIL+VGVNGVGKTT IG
Sbjct: 98  TERVSRKELSDPEALMQALREELQSILLPCQQSFDVSV-GTPFVILMVGVNGVGKTTTIG 156

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+++  D G  VMLAAGDTFR+AA++QL+ W +R     +    G+D+A++ ++A + A
Sbjct: 157 KLARRFQDEGRSVMLAAGDTFRAAAVEQLQHWGERHDVPVIAQHTGADSASVIFDALQAA 216

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+ +DVLI DTAGRL N S LM  + K++RVL +L+P APH V+ VLDA TGQNAL Q 
Sbjct: 217 TARGIDVLIADTAGRLSNKSHLMDELSKVVRVLGKLNPEAPHEVMLVLDAGTGQNALAQA 276

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F    G TGL +TK+DGTA+GG +  I     +P+ F+GVGE   DL PFVA++F   
Sbjct: 277 AQFREAVGVTGLTLTKLDGTAKGGVIFAIARRLGLPIRFIGVGESAEDLRPFVAEEFIQA 336

Query: 310 IT 311
           + 
Sbjct: 337 LF 338


>gi|331007678|ref|ZP_08330814.1| Signal recognition particle receptor protein FtsY [gamma
           proteobacterium IMCC1989]
 gi|330418521|gb|EGG93051.1| Signal recognition particle receptor protein FtsY [gamma
           proteobacterium IMCC1989]
          Length = 399

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 146/320 (45%), Positives = 210/320 (65%), Gaps = 9/320 (2%)

Query: 2   SNQKVASES--LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDI 58
           + + +  E   L++ +++ KG + TS +L EGI  + +  + +DD + EELE  L+ +D+
Sbjct: 67  TPEPIEKEKPSLAFFQRIKKGLSRTSSQLVEGIASVVLGKKHIDDELLEELETQLLMADV 126

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMP-----LSKPFNWDFSHRPH 112
           G+    +I+++L      K ++    LY  + + +  +L+      + +P   D    P 
Sbjct: 127 GIDATTQIIDKLTKAVERKQLNDGDSLYAALQQQLRDLLVDTQAPMMIQPQFADGKKMPM 186

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V LVVGVNGVGKTT IGKL+K++ + G +VMLAAGDTFR+AA++QLKIW DR     V  
Sbjct: 187 VTLVVGVNGVGKTTTIGKLTKRLQNEGKQVMLAAGDTFRAAAVEQLKIWGDRNQVAVVSQ 246

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           + G+D+A++ Y+A   AQAK +DVLI DTAGRLHN S LM  + K+ RV+ +LDP+APH 
Sbjct: 247 DTGADSASVIYDALSSAQAKGIDVLIADTAGRLHNKSHLMDELAKVKRVMAKLDPNAPHE 306

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL VLDA TGQNAL Q E F   AG TGL++TK+DGTA+GG +  +    K+P+ F+GVG
Sbjct: 307 VLLVLDAGTGQNALSQAEHFIKAAGVTGLVLTKLDGTAKGGIVFALSERFKLPIRFIGVG 366

Query: 293 EGINDLEPFVAKDFSAVITG 312
           EGI+DL+PFVA DF   + G
Sbjct: 367 EGIDDLQPFVADDFVRALFG 386


>gi|293398062|ref|ZP_06642267.1| signal recognition particle protein [Neisseria gonorrhoeae F62]
 gi|291611325|gb|EFF40395.1| signal recognition particle protein [Neisseria gonorrhoeae F62]
          Length = 456

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVSLPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   S  P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNQALVELMGKENKTLDLSVS-PPAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +  V+       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLNGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINSLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|59802367|ref|YP_209079.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           FA 1090]
 gi|59719262|gb|AAW90667.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           FA 1090]
          Length = 421

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 183/306 (59%), Gaps = 2/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 116 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 175

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 176 MKDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 235

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 236 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTTGDSAAVCFDA 294

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 295 VQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNA 354

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 355 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 414

Query: 306 FSAVIT 311
           F   + 
Sbjct: 415 FVDALL 420


>gi|206559190|ref|YP_002229950.1| putative cell division protein [Burkholderia cenocepacia J2315]
 gi|198035227|emb|CAR51101.1| putative cell division protein [Burkholderia cenocepacia J2315]
          Length = 386

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 126/309 (40%), Positives = 185/309 (59%), Gaps = 7/309 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   +
Sbjct: 84  QDASAKKSWLARLKTGLAKT----GSSITGVFVNTKIDEDLYEELETALLMSDAGVDATE 139

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++  L  K  A  ++  + +   + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 140 YLLGALREKVRAGRLTDPQQVKAALHDLLVELLTPLEKSLMLGRAQ-PLVMMITGVNGAG 198

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 199 KTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV-QQESGDPAAVIF 257

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 258 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVIAKAHDGAPHEVLLVIDANTGQ 317

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 318 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSA 377

Query: 304 KDFSAVITG 312
            +F+  + G
Sbjct: 378 VEFADALLG 386


>gi|309973736|gb|ADO96937.1| Signal recognition particle receptor FtsY [Haemophilus influenzae
           R2846]
          Length = 400

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 126/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 95  GFFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 154

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P++KP   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 155 EHASRKELQDAELLYQQLKVEMANILEPVAKPLVIDNTKKPYVILMVGVNGVGKTTTIGK 214

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 215 LARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAA 274

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 275 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 334

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 335 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 394

Query: 311 T 311
            
Sbjct: 395 F 395


>gi|317121794|ref|YP_004101797.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermaerobacter marianensis DSM 12885]
 gi|315591774|gb|ADU51070.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermaerobacter marianensis DSM 12885]
          Length = 445

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL+     +    +L +   E    E+   L+ +D+   V +  +  +  +  
Sbjct: 2   AFEGLAEKLQSVFKRLRGKGKLTEADVEAALREVRLALLEADVHFKVVKDFIARVRQRAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V + + +++       +   +    V ++VG+ G GKTT   K
Sbjct: 62  GQEVLESLTPAQQVIKIVHDELTQLMGGQQARLDLGGAPPVPV-MLVGLQGSGKTTTAAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ ++  G + +L A D +R AA++QL     +            D   +A E   +A+
Sbjct: 121 LARLLARQGRQPLLVAADVYRPAAVEQLVTLGQQIQLPVHAPGTDRDPVDIAREGVAEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+IIDTAGRLH +  LM  + ++ + +      AP  +L V+DA TGQ+A+   E
Sbjct: 181 RRGRDVVIIDTAGRLHIDDALMEELERIRQAV------APREILLVVDAMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G  G+++TK+DG ARGG  + +      P+ F+G+GE ++ LEPF  +  ++ I
Sbjct: 235 TFHRRLGIDGVVLTKLDGDARGGAALSVRAVTGRPIKFVGLGERVDQLEPFHPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|85708148|ref|ZP_01039214.1| signal recognition particle GTPase [Erythrobacter sp. NAP1]
 gi|85689682|gb|EAQ29685.1| signal recognition particle GTPase [Erythrobacter sp. NAP1]
          Length = 304

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 138/303 (45%), Positives = 191/303 (63%), Gaps = 2/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           S SW  +L  GF  TS +L   +T + +  RLD+   +++ED LI SD+G A A +I  +
Sbjct: 2   STSWSDRLLGGFRKTSERLGANLTGVAT--RLDEATLDDVEDALIISDLGPAAAARIRAK 59

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  K +  +++ + +   V+E I ++L P++KP       RP VILV+GVNG GKTT I 
Sbjct: 60  LKEKSFGLEITQRELKEAVAEEIAEILRPVAKPLEITAFPRPQVILVIGVNGSGKTTTIA 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+   ++    V+LAAGDTFR+AAI QL  WA+R   D V    G D A++ ++A KQA
Sbjct: 120 KLAHLFTEDDYGVLLAAGDTFRAAAIGQLATWAERAGVDLVRGPEGGDPASIVFDAVKQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
               +D L++DTAGRL N   LM  + K+ RVL RL+  APH V+ VLDAT GQNAL Q+
Sbjct: 180 TDTGIDALVVDTAGRLQNKKELMEELAKIRRVLGRLNEEAPHDVVLVLDATNGQNALSQI 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F  VAG TGLIMTK+DGTARGG L+     + +P++ +GVGE + DL PF     + V
Sbjct: 240 DVFQEVAGVTGLIMTKLDGTARGGVLVAAAEQYGLPIHAIGVGEKMEDLRPFDPDLVARV 299

Query: 310 ITG 312
           I G
Sbjct: 300 IAG 302


>gi|307246266|ref|ZP_07528347.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307250606|ref|ZP_07532547.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307255250|ref|ZP_07537065.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259685|ref|ZP_07541408.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852875|gb|EFM85099.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306857347|gb|EFM89462.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861799|gb|EFM93778.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866225|gb|EFM98090.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 577

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 195/309 (63%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+  SE   +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+   
Sbjct: 266 QEKPSEG-GFFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTT 324

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            K++  L      K +    +LY  +   + ++L P+S+P   D S +P+VIL+VGVNGV
Sbjct: 325 TKVINNLTQHASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGV 384

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ 
Sbjct: 385 GKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVI 444

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A +K +D+LI DTAGRL N + LM  + K++RV K+ D  APH ++  LDA TG
Sbjct: 445 FDAMQSAASKGIDILIADTAGRLQNKNNLMDELKKIVRVTKKYDESAPHEIMLTLDAGTG 504

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF 
Sbjct: 505 QNAISQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFN 564

Query: 303 AKDFSAVIT 311
           A++F   + 
Sbjct: 565 AEEFIEALF 573


>gi|163737648|ref|ZP_02145065.1| signal recognition particle-docking protein FtsY [Phaeobacter
           gallaeciensis BS107]
 gi|161389174|gb|EDQ13526.1| signal recognition particle-docking protein FtsY [Phaeobacter
           gallaeciensis BS107]
          Length = 415

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 126/276 (45%), Positives = 191/276 (69%), Gaps = 1/276 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E+LEDLL+ +D+GV  A ++   +   R  K +S + +   ++  + +++ 
Sbjct: 138 RRALDDDMLEQLEDLLVGADMGVDTALRVTANMAEGRLGKRLSTREIKELLAAEVARIME 197

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P    ++ RP V+LVVGVNG GKTT IGKL+ +    G KV++AAGDTFR+AA++Q
Sbjct: 198 PVARPMPI-YAKRPQVVLVVGVNGSGKTTTIGKLASQFKAVGKKVVIAAGDTFRAAAVEQ 256

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W DR     + +  GSD A+LA++A  +AQ +  D+L+IDTAGRL N + LM  + K
Sbjct: 257 LQVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEEGADLLMIDTAGRLQNRADLMEELAK 316

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV+++ DP APH+ L VLDATTGQNAL QV+ F  +A  +GL+MTK+DGTA+GG L+ 
Sbjct: 317 IVRVIQKKDPSAPHNTLLVLDATTGQNALNQVDTFQKLADVSGLVMTKLDGTAKGGVLVA 376

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +     +P++ +GVGE I+DL PF  +DF+A +TG 
Sbjct: 377 LADRFGLPIHAIGVGEQIDDLAPFDPEDFAAALTGL 412


>gi|303253508|ref|ZP_07339647.1| cell division protein FtsY-like protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248379|ref|ZP_07530402.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307257413|ref|ZP_07539182.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307261833|ref|ZP_07543497.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|302647618|gb|EFL77835.1| cell division protein FtsY-like protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855117|gb|EFM87297.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306864065|gb|EFM95979.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306868450|gb|EFN00263.1| Signal recognition particle-docking protein FtsY [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 576

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 195/309 (63%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+  SE   +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+   
Sbjct: 265 QEKPSEG-GFFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTT 323

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            K++  L      K +    +LY  +   + ++L P+S+P   D S +P+VIL+VGVNGV
Sbjct: 324 TKVINNLTQHASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGV 383

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ 
Sbjct: 384 GKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVI 443

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A +K +D+LI DTAGRL N + LM  + K++RV K+ D  APH ++  LDA TG
Sbjct: 444 FDAMQSAASKGIDILIADTAGRLQNKNNLMDELKKIVRVTKKYDESAPHEIMLTLDAGTG 503

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF 
Sbjct: 504 QNAISQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFN 563

Query: 303 AKDFSAVIT 311
           A++F   + 
Sbjct: 564 AEEFIEALF 572


>gi|153209355|ref|ZP_01947362.1| signal recognition particle-docking protein FtsY [Coxiella burnetii
           'MSU Goat Q177']
 gi|212217698|ref|YP_002304485.1| cell division protein [Coxiella burnetii CbuK_Q154]
 gi|120575388|gb|EAX32012.1| signal recognition particle-docking protein FtsY [Coxiella burnetii
           'MSU Goat Q177']
 gi|212011960|gb|ACJ19340.1| cell division protein [Coxiella burnetii CbuK_Q154]
          Length = 324

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 129/312 (41%), Positives = 190/312 (60%), Gaps = 4/312 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
            N + +     W+ +L +    T  +L +G++++ +  + +D  + EELE +L+ +DIG+
Sbjct: 13  KNNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGI 72

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              Q I+  L  +   K +S  + L D  +  +  +L P  K      S  P VIL VGV
Sbjct: 73  EATQSILNNLSQQVSRKSLSDPKALIDALKIELLNILEPCQKHLEISAS--PFVILTVGV 130

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT I KL+        +VMLAAGDTFR+AAI+QL+ W  R +A     + G+D+A
Sbjct: 131 NGVGKTTTIAKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVSAQQPGADSA 190

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+A + A A+  D+LI DTAGRLH  S LM  + K+ RV+K+++P APH  L VLDA
Sbjct: 191 SVIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDA 250

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q E FH   G TG+ +TK+DGTA+GG +  I    ++P+ F+G+GE I DL+
Sbjct: 251 GTGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLK 310

Query: 300 PFVAKDFSAVIT 311
           PF AK+F A + 
Sbjct: 311 PFNAKEFIAALF 322


>gi|126728988|ref|ZP_01744803.1| Signal recognition particle-docking protein FtsY [Sagittula
           stellata E-37]
 gi|126710918|gb|EBA09969.1| Signal recognition particle-docking protein FtsY [Sagittula
           stellata E-37]
          Length = 357

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 137/356 (38%), Positives = 204/356 (57%), Gaps = 54/356 (15%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-------------------------------- 38
           +S+  KL      TS KL EG+  I+                                  
Sbjct: 1   MSFFGKLKNRLFKTSSKLDEGLDAIVEEGSDETPADDTPAPEAPIAAMQPMALPEETEPQ 60

Query: 39  ---------------------RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
                                R LDD + E LE+LLI SD+GV  A ++   +   R  +
Sbjct: 61  GTQRPGLLGRLIGQPDSAEPRRVLDDDMLESLEELLIASDMGVDTALRVTSNIAEGRMGR 120

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
            VS + +   ++E I +++  +++P    +  +P V+LVVGVNG GKTT IGKL+ +   
Sbjct: 121 RVSAREIKELLAEEIARVMESVARPLPI-YPKKPQVVLVVGVNGSGKTTTIGKLASQFRA 179

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           AG  V++AAGDTFR+AA++QL++W +R     + +  GSD A+LA++A  +AQA+  D+L
Sbjct: 180 AGKSVVIAAGDTFRAAAVEQLQVWGERAGVPVLTAPEGSDPASLAFDAMGKAQAEGADLL 239

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDTAGRL N + LM  + K++RV+++ DP APH+ L VLDATTGQNAL QVE F  +A 
Sbjct: 240 MIDTAGRLQNRADLMEELAKIVRVIRKKDPDAPHNTLLVLDATTGQNALIQVEAFRQLAD 299

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +GL+MTK+DGTA+GG L+ +     +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 300 VSGLVMTKLDGTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 355


>gi|167758974|ref|ZP_02431101.1| hypothetical protein CLOSCI_01320 [Clostridium scindens ATCC 35704]
 gi|167663381|gb|EDS07511.1| hypothetical protein CLOSCI_01320 [Clostridium scindens ATCC 35704]
          Length = 449

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 148/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++ S  RL +       +E++  L+ +D+   V +  ++ +  +  
Sbjct: 2   AFDSLTEKLQNIFKNLRSKGRLTEDDVKEALKEIKRALLAADVNFKVVKDFIKNVQERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +            VI++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEELVKLMGSETTEIALQPGSAITVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G   +L A D +R AAI QL++  ++   +          + +A  A + AQ
Sbjct: 122 LAGKYKVKGKNPLLVACDVYRPAAIKQLQVNGEKQGVEVFAMGESHKPSNIAKAAIEHAQ 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
                ++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+   +
Sbjct: 182 KNGNRIVILDTAGRLHIDEDMMAELAEIKEAVN------VHQTILVIDAMTGQDAVNVAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + +      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 EFNEKIGVDGVIVTKLDGDTRGGAALSVKAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|325202877|gb|ADY98331.1| signal recognition particle protein [Neisseria meningitidis
           M01-240149]
 gi|325207324|gb|ADZ02776.1| signal recognition particle protein [Neisseria meningitidis
           NZ-05/33]
          Length = 456

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ +  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFINNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|241661887|ref|YP_002980247.1| signal recognition particle-docking protein FtsY [Ralstonia
           pickettii 12D]
 gi|240863914|gb|ACS61575.1| signal recognition particle-docking protein FtsY [Ralstonia
           pickettii 12D]
          Length = 398

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 178/308 (57%), Gaps = 7/308 (2%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +      W+ +L  G + TS    +G+T +    ++D+ + EELE  L+ +D GV   + 
Sbjct: 97  IEQARKGWMSRLRSGLSKTS----KGLTTLFVGVKVDEALFEELETALLMADAGVDATEY 152

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++ EL  +  A+ +     +   + +L+ ++L PL K         P VI++ GVNG GK
Sbjct: 153 LLAELRRRIKAQRIETSEGVKTALRDLLVELLHPLEKTMVLGREQ-PMVIMIAGVNGAGK 211

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL K     G  V+LAAGDTFR+AA +QL IW  R +   V  E   D AA+ ++
Sbjct: 212 TTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQE-SGDPAAVIFD 270

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+A+ +D+++ DTAGRL     LM  + K+ RV  +    APH  L V+D  TGQN
Sbjct: 271 AVNAARARGIDIVMADTAGRLPTQLHLMEELKKVRRVTAKAMATAPHETLLVIDGNTGQN 330

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A+
Sbjct: 331 ALAQVKAFDEALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAR 390

Query: 305 DFSAVITG 312
           +F+  + G
Sbjct: 391 EFADALLG 398


>gi|227544363|ref|ZP_03974412.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus reuteri
           CF48-3A]
 gi|300909776|ref|ZP_07127237.1| signal recognition particle protein [Lactobacillus reuteri SD2112]
 gi|227185626|gb|EEI65697.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus reuteri
           CF48-3A]
 gi|300893641|gb|EFK87000.1| signal recognition particle protein [Lactobacillus reuteri SD2112]
          Length = 481

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  +    ++ +  +RE   E+   L+ +D+   V +  V+ +  K  
Sbjct: 2   AFEGLTDRLQKAMEKLRRKPKVTEADLRETMREIRLALLEADVNFKVVKDFVKTVREKAA 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + K++   + P N    H P VI++VG+ G GKTT  GK
Sbjct: 62  GAEVLKGLNPAQQIVKIVNDELTKLMGEEAVPLN-KAPHIPTVIMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++ +    + M  A D +R AAI QL+  AD+            D   +  E  + A
Sbjct: 121 LALRLKNENHARPMFIAADVYRPAAITQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +IIDTAGRL  +  LM  +  +  ++       P+ +L V+D+ TGQNA+   
Sbjct: 181 KKNHNDYVIIDTAGRLQIDEQLMDELANIKELVN------PNEILLVIDSMTGQNAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 235 QGFDDKLDITGVVLTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|53728959|ref|ZP_00134416.2| COG0552: Signal recognition particle GTPase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208810|ref|YP_001054035.1| cell division protein FtsY-like protein [Actinobacillus
           pleuropneumoniae L20]
 gi|126097602|gb|ABN74430.1| cell division protein FtsY-like protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 577

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 195/309 (63%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+  SE   +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+   
Sbjct: 266 QEKPSEG-GFFSRLLKGLVKTKQSIGSGFRNFFSGKKIDDDLFEELEEQLLVADLGMPTT 324

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            K++  L      K +    +LY  +   + ++L P+S+P   D S +P+VIL+VGVNGV
Sbjct: 325 TKVINNLTQHASKKQLKDADLLYQQLKLELGEVLKPVSQPLEIDTSKKPYVILMVGVNGV 384

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ 
Sbjct: 385 GKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVI 444

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A +K +D+LI DTAGRL N + LM  + K++RV K+ D  APH ++  LDA TG
Sbjct: 445 FDAMQSAASKGIDILIADTAGRLQNKNNLMDELKKIVRVTKKYDESAPHEIMLTLDAGTG 504

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF 
Sbjct: 505 QNAISQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFN 564

Query: 303 AKDFSAVIT 311
           A++F   + 
Sbjct: 565 AEEFIEALF 573


>gi|117621132|ref|YP_855207.1| signal recognition particle protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562539|gb|ABK39487.1| signal recognition particle protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 458

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTERLSRTLRNVSGRGRLTEENIKETLREVRMALLEADVALPVVRDFVARVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   +  ++   ++  N   +  P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVAKSLSPGQAFIKIVHGELVSVMGEANEQLNL-AAQPPAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  S+       +A  A  QA+
Sbjct: 121 AKLLKERSKKKVLVVSADVYRPAAIKQLETLANDIGVDFFPSDASQKPVDIANAAIDQAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRLH +S +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVVIVDTAGRLHVDSDMMDEIKHLHATIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      PV F+G+GE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKADGDARGGAALSVRHITGKPVKFIGMGEKTDALEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|325203414|gb|ADY98867.1| signal recognition particle protein [Neisseria meningitidis
           M01-240355]
          Length = 456

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQVKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   S  P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNQALTELMGRENKTLDLSVS-PPAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|188577553|ref|YP_001914482.1| signal recognition particle-docking protein FtsY [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188522005|gb|ACD59950.1| signal recognition particle-docking protein FtsY [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 311

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              W  +L                 + S   +LDD + +E+E  LI +D+G+     ++E
Sbjct: 8   KPGWRERLRNS------TFARSFGGLFSRNPKLDDDLLDEIETALITADVGIGATTALIE 61

Query: 69  ELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +  +++ V  Q +   +   +  +L P+SKP   D + +P V+L VGVNGVGKTT 
Sbjct: 62  GLRKRMKSREFVDAQAMFKALRADLIALLQPVSKPLVIDRARKPFVVLTVGVNGVGKTTT 121

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W DR     +     +DAA++A++A +
Sbjct: 122 IGKLAKRFKDEGNSLMLAAGDTFRAAAVAQLQAWGDRNGVAVIAQGQNADAASVAFDALQ 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DVLI DTAGRLH  + LM  +GK+ RVL ++D  APH VL V+D TTGQNA+ 
Sbjct: 182 AAKARGTDVLIADTAGRLHTQTGLMNELGKIRRVLGKIDAAAPHEVLMVIDGTTGQNAIS 241

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  FHA  G TGL++TK+DGTA+GG +  +     IP+ F G+GE   DL  F    F 
Sbjct: 242 QLRQFHAAVGVTGLVVTKLDGTAKGGVVFALAREFNIPIRFAGIGERPEDLRVFDPVAFV 301

Query: 308 AVIT 311
             + 
Sbjct: 302 DALL 305


>gi|159045265|ref|YP_001534059.1| hypothetical protein Dshi_2725 [Dinoroseobacter shibae DFL 12]
 gi|157913025|gb|ABV94458.1| hypothetical protein Dshi_2725 [Dinoroseobacter shibae DFL 12]
          Length = 499

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 127/275 (46%), Positives = 189/275 (68%), Gaps = 1/275 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R +DD + E LE++LI +D+GV  A ++   +   R  + VS   +   +++ I +++ 
Sbjct: 223 RRVMDDAMLESLEEVLIAADMGVDTALRVSANIAEGRMGRKVSTNEIKRILADEIARIME 282

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P++KP    +  RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++Q
Sbjct: 283 PVAKPLPI-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKSVVIAAGDTFRAAAVEQ 341

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W DR     + +  GSD A+LA++A KQAQA   D+L+IDTAGRL N + LM  + K
Sbjct: 342 LQVWGDRAGVPVLTAPEGSDPASLAFDAIKQAQASGADLLMIDTAGRLQNRADLMEELAK 401

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV++++D  APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+DGTA+GG L+ 
Sbjct: 402 IVRVIRKVDETAPHNTLLVLDATTGQNALSQVETFRKLADVSGLVMTKLDGTAKGGVLVA 461

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     +P++ +GVGE I+DL PF  ++F+  +TG
Sbjct: 462 LADKFGLPIHAIGVGEQIDDLAPFDPEEFADALTG 496


>gi|229845814|ref|ZP_04465926.1| cell division protein FtsY [Haemophilus influenzae 7P49H1]
 gi|229810818|gb|EEP46535.1| cell division protein FtsY [Haemophilus influenzae 7P49H1]
          Length = 400

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 190/301 (63%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 95  GFFSRLVKGLLKTKQNVGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 154

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                K++    +LY  +   +  +L P+++P   D + +P+VIL+VGVNGVGKTT IGK
Sbjct: 155 EHASRKELQDAELLYQQLKVEMVDILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGK 214

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R     V    GSD+A++ ++A + A 
Sbjct: 215 LARKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVSQSTGSDSASVIFDAMQSAA 274

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 275 ARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 334

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE I DL  F AK+F   +
Sbjct: 335 LFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEAL 394

Query: 311 T 311
            
Sbjct: 395 F 395


>gi|313669229|ref|YP_004049513.1| signal recognition particle protein [Neisseria lactamica ST-640]
 gi|313006691|emb|CBN88159.1| signal recognition particle protein [Neisseria lactamica 020-06]
          Length = 456

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNQALVELMGKENKTLDLSVA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+   +   +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQNPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVS------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     +  I
Sbjct: 235 AFNEALPLTGIVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|271501692|ref|YP_003334718.1| signal recognition particle protein [Dickeya dadantii Ech586]
 gi|270345247|gb|ACZ78012.1| signal recognition particle protein [Dickeya dadantii Ech586]
          Length = 453

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKEQAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  +++  N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVQNELVAAMGEVNQALNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +      KV++ + D +R AAI QL+  A     DF  S+       +   A + A+
Sbjct: 121 GKFLREKQKKKVLVVSADVYRPAAIKQLETLAQTVGVDFFPSDANEKPVDIVNRALQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDDAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|127514534|ref|YP_001095731.1| signal recognition particle-docking protein FtsY [Shewanella
           loihica PV-4]
 gi|126639829|gb|ABO25472.1| signal recognition particle-docking protein FtsY [Shewanella
           loihica PV-4]
          Length = 561

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 128/307 (41%), Positives = 191/307 (62%), Gaps = 1/307 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
              +  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV    +++  
Sbjct: 252 KEGFFARLKRGLKRTSENIGSGFIGLFKGKKIDDELFEELEEQLLIADVGVETTSRLIAS 311

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   K +     LY++  E + K L P+S P   + S  P VIL+VGVNGVGKTT I
Sbjct: 312 LTEQASRKQLKDGEALYELMREEMQKTLEPVSIPLVPENSEGPFVILMVGVNGVGKTTTI 371

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + 
Sbjct: 372 GKLAKQYQQQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVLFDALQA 431

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+K+D+LI DTAGRL N + LM  + K++RV+K+ D  APH V+  LDA+TGQNA+ Q
Sbjct: 432 ARARKIDILIADTAGRLQNKAHLMDELKKVVRVMKKQDESAPHEVMLTLDASTGQNAISQ 491

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+ M+K+DGTA+GG +  I     IP+  +GVGE I+DL PF AKDF  
Sbjct: 492 AQLFKEAVGVTGITMSKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRPFDAKDFID 551

Query: 309 VITGCLD 315
            +    D
Sbjct: 552 ALFSHED 558


>gi|254805664|ref|YP_003083885.1| signal recognition particle protein [Neisseria meningitidis
           alpha14]
 gi|254669206|emb|CBA07997.1| signal recognition particle protein [Neisseria meningitidis
           alpha14]
          Length = 456

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   S  P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNKALTELMGKENKTLDLSVS-PPAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGIVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|237749579|ref|ZP_04580059.1| signal recognition particle receptor [Oxalobacter formigenes
           OXCC13]
 gi|229380941|gb|EEO31032.1| signal recognition particle receptor [Oxalobacter formigenes
           OXCC13]
          Length = 351

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 184/308 (59%), Gaps = 6/308 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++   +  SW+ +L  G A TS  L     +I     +D+ + EELE  L+ SD+G+   
Sbjct: 49  KQDTEKKQSWLSRLKSGLAKTSANL-----NIFGGTTIDEELFEELETALLVSDVGMPAT 103

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + +++EL  K   + ++    +      +   L+   +       H P VI++ GVNG G
Sbjct: 104 EYLLDELRRKVKEEKLTQPSEIKTALAALLTDLLAPLQKNLEIGRHNPLVIMMAGVNGAG 163

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL++ + +    V+LAAGDTFR+AA +QL +W DR     +  E   D AA+A+
Sbjct: 164 KTTTIGKLAQHLQNNDQTVLLAAGDTFRAAAREQLAVWGDRNKITVIAQE-SGDPAAVAF 222

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+AK ++V+++DTAGRL   S LM  + K+ RV+ +    APH ++ V+D  TGQ
Sbjct: 223 DAVQSAKAKNINVVMVDTAGRLPTQSHLMEELKKVKRVIGKGMDEAPHEIILVIDGNTGQ 282

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGT +GG L  I   H +PVYF+GVGE I+DL+PFVA
Sbjct: 283 NALAQVKAFDETLGLTGLIVTKLDGTPKGGILAAIAKNHPVPVYFIGVGEKIDDLQPFVA 342

Query: 304 KDFSAVIT 311
           ++FS  + 
Sbjct: 343 EEFSNALL 350


>gi|149202012|ref|ZP_01878986.1| signal recognition particle-docking protein FtsY [Roseovarius sp.
           TM1035]
 gi|149145060|gb|EDM33089.1| signal recognition particle-docking protein FtsY [Roseovarius sp.
           TM1035]
          Length = 403

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 128/276 (46%), Positives = 190/276 (68%), Gaps = 1/276 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E LE+LLI +D+GV  A ++   +   R  K +S Q +   +++ I +++ 
Sbjct: 126 RRVLDDAMLESLEELLIAADMGVDTALRVTANMAEGRMGKRLSTQEIKELLAQEIARIME 185

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P    ++ RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++Q
Sbjct: 186 PVARPMPI-YAKRPQVVLVVGVNGSGKTTTIGKLAAQFKGAGKSVVIAAGDTFRAAAVEQ 244

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W  R     + +  GSD A+LA++A  +A+A+  D+L+IDTAGRL N + LM  + K
Sbjct: 245 LQVWGQRAGVPVMTAPEGSDPASLAFDAMTRAEAEGADLLMIDTAGRLQNRADLMEELAK 304

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV+++ DP APH+ L VLDATTGQNAL QV  F  +A  +GL+MTK+DGTARGG L+ 
Sbjct: 305 IVRVIRKKDPSAPHNTLLVLDATTGQNALSQVATFQKLADVSGLVMTKLDGTARGGVLVA 364

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +     +P++ +GVGE I+DL PF  +DF+A +TG 
Sbjct: 365 LADKFGLPIHAIGVGEQIDDLAPFDPQDFAAALTGL 400



 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVRE 47
          +++  KL +    +S KL+EG+  I+   R D+  +E
Sbjct: 1  MAFFSKLKERLFKSSSKLEEGLEAIVDEGRADESAQE 37


>gi|218887972|ref|YP_002437293.1| signal recognition particle protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758926|gb|ACL09825.1| signal recognition particle protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 518

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L         + RLD+        E+   L+ +D+   V +  +E +  +   
Sbjct: 2   FDSLSDRLTGVFRKFTGTGRLDEANIQDGLREVRLALLEADVNFKVVRDFIERVRERCLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V + + ++L   +   +     +P+VI++VG+ G GKTT   K+
Sbjct: 62  QDVLKSLTPAQQVVKIVHDELVELLGGGTTQLDL-RGKQPYVIMMVGLQGSGKTTSSAKI 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +    ++  L   D +R AAIDQL   A +       S  G +   +A  A + A+ 
Sbjct: 121 ANLLRKQKMRPYLVPADVYRPAAIDQLHTLAKQLDIPAYPSAPGMNPVDIAVAAVEDARE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K+ +V+I+DTAGRLH +  LM  +  +   ++      P  +L V DA TGQ+A+   E 
Sbjct: 181 KQCNVVIVDTAGRLHIDETLMQELVSIKGRVE------PQEILFVADAMTGQDAVTVAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     +G+++TKMDG ARGG  + I      PV F+G+GE ++D+E F     +  I 
Sbjct: 235 FNTALDISGVVLTKMDGDARGGAALSIRSVTGKPVKFVGMGEKLSDIEVFHPDRVAGRIL 294

Query: 312 GCLDY 316
           G  D 
Sbjct: 295 GMGDM 299


>gi|39996234|ref|NP_952185.1| cell division protein FtsY [Geobacter sulfurreducens PCA]
 gi|39983114|gb|AAR34508.1| cell division protein FtsY [Geobacter sulfurreducens PCA]
 gi|298505246|gb|ADI83969.1| signal recognition particle GTPase FtsY [Geobacter sulfurreducens
           KN400]
          Length = 350

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 183/312 (58%), Gaps = 3/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
           +  +          +L +G + T   L   I  + +  + +D    EELE++LI +D+GV
Sbjct: 39  APPEQEDRRPGLFERLKQGLSKTRDSLVGRIDRLVLGKKEIDADTLEELEEILITADLGV 98

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               +++  L  +    ++     L + + E IH  L   +   +   +  P VI+V+GV
Sbjct: 99  QTTVELIRGLEQRLSRNELKDGEALREALKEDIHGRLARDAHQLDVTGA-SPFVIMVIGV 157

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ + +  G KV+LAAGDTFR+AA +QL+IW +RT  D +  + G+D +
Sbjct: 158 NGVGKTTTIGKLAARFTAQGKKVILAAGDTFRAAAAEQLQIWGERTGVDVIRHKEGADPS 217

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ +++ K A A+  D+LI+DTAGRLH    LM  + K+ R++ R  P APH  L VLDA
Sbjct: 218 AVVFDSIKAAVARGADILIVDTAGRLHTKVNLMEELKKVRRIMSREIPGAPHETLLVLDA 277

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNAL Q ++F   A  TG+ +TK+DGTA+GG ++ I    +IPV ++GVGEGI+DL 
Sbjct: 278 ATGQNALSQAKLFKEAAQVTGIALTKLDGTAKGGIVVAICNEFRIPVRYIGVGEGIDDLR 337

Query: 300 PFVAKDFSAVIT 311
            F    F   + 
Sbjct: 338 DFDPSQFVEALF 349


>gi|322513256|ref|ZP_08066380.1| signal recognition particle protein [Actinobacillus ureae ATCC
           25976]
 gi|322120963|gb|EFX92810.1| signal recognition particle protein [Actinobacillus ureae ATCC
           25976]
          Length = 498

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 35  FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERAIG 94

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 95  EEVNKSLTPGQEFLKVVQSELEKAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 153

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 154 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVEIAELALKHAK 213

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    +
Sbjct: 214 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTGQDAANTAK 267

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 268 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 327

Query: 311 TGCLD 315
            G  D
Sbjct: 328 LGMGD 332


>gi|325128967|gb|EGC51819.1| signal recognition particle protein [Neisseria meningitidis N1568]
 gi|325131638|gb|EGC54344.1| signal recognition particle protein [Neisseria meningitidis M6190]
 gi|325139014|gb|EGC61561.1| signal recognition particle protein [Neisseria meningitidis
           ES14902]
 gi|325145234|gb|EGC67514.1| signal recognition particle protein [Neisseria meningitidis
           M01-240013]
 gi|325199007|gb|ADY94463.1| signal recognition particle protein [Neisseria meningitidis G2136]
          Length = 456

 Score =  295 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT  GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVA-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|283786230|ref|YP_003366095.1| signal recognition particle protein [Citrobacter rodentium ICC168]
 gi|282949684|emb|CBG89303.1| signal recognition particle protein [Citrobacter rodentium ICC168]
          Length = 453

 Score =  295 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQSLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|319945301|ref|ZP_08019563.1| cell division protein FtsY [Lautropia mirabilis ATCC 51599]
 gi|319741871|gb|EFV94296.1| cell division protein FtsY [Lautropia mirabilis ATCC 51599]
          Length = 533

 Score =  295 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 184/313 (58%), Gaps = 10/313 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            + V      W  +L  G A T  +L      I S  R+D+ + EELE  L+ SD G   
Sbjct: 226 PEAVRPARAGWFARLRGGLARTRSQLGS----IFSRNRIDETLYEELETALLASDTGYGT 281

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              +++EL  +     ++    L   + +++ ++L PL KP + D +  P V+++ GVNG
Sbjct: 282 TTWLLDELRERAQRDRINDAATLKTALIDILTELLSPLEKPIDVDRAD-PLVMMITGVNG 340

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL++ +      V+LAAGDTFR+AA +QL  W +R     + +E G D AA+
Sbjct: 341 AGKTTSIGKLARHLHQIDQSVLLAAGDTFRAAAREQLARWGERNQVHVIANE-GGDPAAV 399

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K  QA+KVDV+++DTAGRL     LM  + K+ RV+ +    APH VL VLD  T
Sbjct: 400 AFDAIKAGQARKVDVVMVDTAGRLPTQRHLMDELKKIRRVIGKAMDGAPHEVLLVLDGNT 459

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK---IPVYFLGVGEGINDL 298
           GQN L QV+ F      TGL++TK+DGTA+GG +  +  T +   +PVYF+GVGEG+ DL
Sbjct: 460 GQNMLAQVQAFDEAVQLTGLVVTKLDGTAKGGAIAALAHTRRDNPLPVYFIGVGEGVEDL 519

Query: 299 EPFVAKDFSAVIT 311
           + F A++F+  + 
Sbjct: 520 QAFSAREFATALL 532


>gi|54307374|ref|YP_128394.1| putative cell division protein FtsY [Photobacterium profundum SS9]
 gi|46911794|emb|CAG18592.1| putative cell division protein FtsY [Photobacterium profundum SS9]
          Length = 427

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 125/309 (40%), Positives = 194/309 (62%), Gaps = 1/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++   +S  +  +L +G   T      G   + S +++DD + EELE+ L+ + +G+   
Sbjct: 115 EQEKPQSDGFFARLMRGLKKTKTNFGSGFFGLFSGKKIDDELFEELEEQLLIAXVGMDXT 174

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             I+E L  K    ++     LY  + E +  ML  + +P   D + +P VIL+VGVNGV
Sbjct: 175 LXIIENLTDKAXRNELKDGEALYGLLKEELADMLSTVEQPLIVDTTQKPFVILMVGVNGV 234

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ 
Sbjct: 235 GKTTTIGKLAKQFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNGVPVVAQHTGADSASVI 294

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + AQA+ VDV+I DTAGRL N   LM  + K++RV+K++DP APH ++  +DA TG
Sbjct: 295 FDAIESAQARNVDVVIADTAGRLQNKGHLMEELRKIVRVMKKVDPAAPHEIMLTVDAGTG 354

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F  VA  +G+ ++K+DGTA+GG +  I     IP+ ++G+GEGI+DL PFV
Sbjct: 355 QNAISQAKLFSEVAPVSGITISKLDGTAKGGVIFAIANQFSIPIRYIGIGEGIDDLRPFV 414

Query: 303 AKDFSAVIT 311
           A +F   + 
Sbjct: 415 ADEFIEALF 423


>gi|253689573|ref|YP_003018763.1| signal recognition particle protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756151|gb|ACT14227.1| signal recognition particle protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 453

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELVSAMGEINAELNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +      KV++ + D +R AAI QL+  A++   DF  S++     A+   A + A+
Sbjct: 121 GKFLREKQKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVQEKPLAIVERALQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF  +  ++ I
Sbjct: 235 AFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|240017397|ref|ZP_04723937.1| putative signal recognition particle protein [Neisseria gonorrhoeae
           FA6140]
          Length = 456

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + +        +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGHFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   S  P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNQALVELMGKENKTLDLSVS-PPAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +  V+       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAVVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLNGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|149377073|ref|ZP_01894823.1| signal recognition particle protein [Marinobacter algicola DG893]
 gi|149358609|gb|EDM47081.1| signal recognition particle protein [Marinobacter algicola DG893]
          Length = 462

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  I    RL DD ++E L +    L+ +D+ + V +  +E +  +   
Sbjct: 2   FENLQDRLSGSLRKISGQARLTDDNIKETLREVRMALLEADVALPVVKAFIEGVRQRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + + +++   ++  N      P VI++ G+ G GKTT + KL
Sbjct: 62  QEVQRSLSPGQVFVKVVQQELERVMGDGNESLNLAV-QPPAVIMMAGLQGAGKTTTVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           S+ +       V++ + D +R AAI QL+  A     +F  S    D   +A  A   A+
Sbjct: 121 SRFLKERQKKSVLVVSADVYRPAAIRQLETLAGEVGVEFFPSSEDQDPVDIANGAMDAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  IG++ + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKHIDVVILDTAGRLHVDEQMMGEIGRLHKAVN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVVLTKTDGDARGGAALSVRHITGKPIKFLGVGEKSDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|161870769|ref|YP_001599942.1| signal recognition particle protein [Neisseria meningitidis 053442]
 gi|161596322|gb|ABX73982.1| signal recognition particle protein [Neisseria meningitidis 053442]
          Length = 456

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +    + +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT  GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVA-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|82777969|ref|YP_404318.1| signal recognition particle protein [Shigella dysenteriae Sd197]
 gi|309784646|ref|ZP_07679281.1| signal recognition particle protein [Shigella dysenteriae 1617]
 gi|81242117|gb|ABB62827.1| GTP-binding export factor [Shigella dysenteriae Sd197]
 gi|308927543|gb|EFP73015.1| signal recognition particle protein [Shigella dysenteriae 1617]
          Length = 453

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQRPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|330831191|ref|YP_004394143.1| GTP-binding export factor [Aeromonas veronii B565]
 gi|328806327|gb|AEB51526.1| GTP-binding export factor [Aeromonas veronii B565]
          Length = 458

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTERLSRTLRNVSGRGRLTEDNIKETLREVRMALLEADVALPVVRDFVARVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   +  ++   ++  N   +  P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVAKSLSPGQAFIKIVHGELVTVMGEANEQLNL-AAQPPAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S+       +A  A  QA+
Sbjct: 121 AKLLKERSKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSDASQKPVDIATAAIDQAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRLH +S +MA I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVVIVDTAGRLHVDSEMMAEIQDLHATIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      PV F+G+GE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKADGDARGGAALSVRHITGKPVKFIGMGEKTDALEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|326797249|ref|YP_004315069.1| signal recognition particle-docking protein FtsY [Marinomonas
           mediterranea MMB-1]
 gi|326548013|gb|ADZ93233.1| signal recognition particle-docking protein FtsY [Marinomonas
           mediterranea MMB-1]
          Length = 434

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 136/313 (43%), Positives = 200/313 (63%), Gaps = 4/313 (1%)

Query: 3   NQKVASES--LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIG 59
           NQ+V  E   LSW  ++  G A T   L  G++ + + S+++DD + EELE  L+ +D+G
Sbjct: 119 NQEVPDEKPTLSWRERIQSGLARTRSGLGNGLSSLVLGSKKVDDDLLEELETQLLTADVG 178

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           +   Q +++ L  K   K++     L   +   ++ +L    KP + D +  P VIL+VG
Sbjct: 179 IDATQTLIDGLTEKLNRKELKDSNALMSSLKADMNDILEISEKPLSLDKADGPFVILMVG 238

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+KK    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+
Sbjct: 239 VNGVGKTTTIGKLAKKYQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNQVPVVAQHTGADS 298

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+A + A+AK VDV+I DTAGRL N + LM+ + K++RV+K+LD  APH V+ VLD
Sbjct: 299 ASVIYDAIESAKAKSVDVVIADTAGRLQNKANLMSELEKVVRVMKKLDVSAPHEVMLVLD 358

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQNAL Q ++F    G +G+ +TK+DGTA+GG +  I     +P+ ++GVGE   DL
Sbjct: 359 AGTGQNALSQAKLFTEAVGVSGITLTKLDGTAKGGIIFAIAKQFGLPIRYIGVGEQAEDL 418

Query: 299 EPFVAKDFSAVIT 311
            PFVA++F   + 
Sbjct: 419 RPFVAQEFVDALF 431


>gi|261391829|emb|CAX49286.1| signal recognition particle protein (fifty-four homolog) [Neisseria
           meningitidis 8013]
          Length = 456

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +    + +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT  GKL
Sbjct: 62  QEVVGSLTPDQAFIGVVNKALTELMGRENKTLDLSVA-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|254515831|ref|ZP_05127891.1| signal recognition particle-docking protein FtsY [gamma
           proteobacterium NOR5-3]
 gi|219675553|gb|EED31919.1| signal recognition particle-docking protein FtsY [gamma
           proteobacterium NOR5-3]
          Length = 352

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 130/314 (41%), Positives = 190/314 (60%), Gaps = 5/314 (1%)

Query: 2   SNQKVASESLS--WIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDI 58
           SNQ    E+    +  +L +G   TS  L  G+ ++    + +D  + EELE  L+ +D+
Sbjct: 37  SNQDSDPEAAGPGFFGRLKRGLGRTSDSLAAGVGNLFLGRKTIDADLLEELETQLLMADV 96

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           G+    +I+  L  +   K++S    L   + + +  +L P  K  +   +  P VIL+V
Sbjct: 97  GIEATSEIIAHLTDRVSRKELSDPEALMQGLRDELQGILQPCEKSLDVS-AGSPFVILMV 155

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+++  D G  VMLAAGDTFR+AA++QL+ W +R     +    G+D
Sbjct: 156 GVNGVGKTTTIGKLARRFQDEGRSVMLAAGDTFRAAAVEQLQHWGERHDVPVIAQHTGAD 215

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           +A++ Y+A + A A+ VDVLI DTAGRL N S LM  + K++RV+++L+P AP  V+ VL
Sbjct: 216 SASVIYDALQAATARGVDVLIADTAGRLSNKSHLMEELSKVVRVMRKLNPDAPQEVMLVL 275

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQNAL Q   F    G TGL +TK+DGTA+GG +  I     +P+ F+GVGE   D
Sbjct: 276 DAGTGQNALSQASQFLEAVGVTGLTLTKLDGTAKGGVIFAIARRLGLPIRFIGVGESALD 335

Query: 298 LEPFVAKDFSAVIT 311
           L PFVA++F   + 
Sbjct: 336 LRPFVAEEFIQALF 349


>gi|188534781|ref|YP_001908578.1| signal recognition particle protein [Erwinia tasmaniensis Et1/99]
 gi|188029823|emb|CAO97704.1| Signal recognition particle protein (Fifty-four homolog) [Erwinia
           tasmaniensis Et1/99]
          Length = 453

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFIGRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   +   +   +   N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  QEVNKSLTPGQEFVKIVKNELVAAMGEENNTLNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++      +   A +QA+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFCPSDLSQQPVDIVKNALQQAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ F+GVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPDRIASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|295109860|emb|CBL23813.1| signal recognition particle protein [Ruminococcus obeum A2-162]
          Length = 448

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 148/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+     +    RL +       +E++  L+ +D+   V ++  + +  +  
Sbjct: 2   AFESLTDKLQNVFKKLRGKGRLTEEDVKVALKEVKMALLEADVNFKVVKQFTKAVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +        +   VI++ G+ G GKTT + K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEELVSLMGSETTELPLKQGNEITVIMMAGLQGAGKTTTVAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+   G + +L A D +R AAI QL++  ++   +        +   +A  A + A+
Sbjct: 122 LAGKLKSKGKRPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQNPVDIAKAAIEHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A + +V++IDTAGRLH +  +M  +  +   +           L  +DA TGQ+A+   +
Sbjct: 182 ANQQNVVLIDTAGRLHVDENMMQELADIKANVN------VDCTLLTVDAMTGQDAVNVAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I+TKMDG  RGG  + I      P+ ++G+GE ++DLE F  +  ++ I
Sbjct: 236 TFAEKVGIDGVILTKMDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFYPERMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|153216299|ref|ZP_01950389.1| signal recognition particle protein [Vibrio cholerae 1587]
 gi|124114341|gb|EAY33161.1| signal recognition particle protein [Vibrio cholerae 1587]
          Length = 459

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V  +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V + +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    K ++ + D +R AAI QL+  A+    DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKALVVSADVYRPAAIKQLETLANDLGVDFFPSSPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|307264844|ref|ZP_07546406.1| signal recognition particle protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920102|gb|EFN50314.1| signal recognition particle protein [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 446

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L+E    +    +L +  ++E + +    L+ +D+   V +  +  +  K  
Sbjct: 2   AFESLSERLQEIFKKLRGKGKLTEKDIKEAMREVKVALLEADVNFKVVKDFINSVTEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V++ +  ++       N   +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQEVMESLTPGQQVIKIVNDELIALMGSTQSRLNIG-NKVPAVIMMVGLQGSGKTTACGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G   +L A D  R AAI QL++     +          +   +A  +   A+
Sbjct: 121 LANLLKKQGKNPLLVACDVVRPAAIKQLQVVGANVNVPVFTMGDKVNPVDIAKASIDYAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   DV+IIDTAGRLH +  LM  +  + + ++      P  +L V+DA TGQ+A+    
Sbjct: 181 SHNSDVIIIDTAGRLHIDEELMEELVNIKKAVQ------PDEILLVVDAMTGQDAVNVAS 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + I    + P+ ++G GE + DLEPF     ++ I
Sbjct: 235 SFNERLDITGVILTKLDGDTRGGAALSIKAVTQKPIKYVGAGEKLTDLEPFYPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|260437024|ref|ZP_05790840.1| signal recognition particle protein [Butyrivibrio crossotus DSM
           2876]
 gi|292810333|gb|EFF69538.1| signal recognition particle protein [Butyrivibrio crossotus DSM
           2876]
          Length = 448

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 150/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLD-DGVR---EELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+     +    RL  D V+   +E++  L+ +D+   V ++ V  +  +  
Sbjct: 2   AFDSLSEKLQNIFKKLRGKGRLSADDVKTAMKEVKMALLEADVNFKVVKQFVNTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +   ++     P VI++ G+ G GKTT   K
Sbjct: 62  GQDVMSSLTPGQMVIKIVNEEMVALMGSETTEISFVPGAAPTVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+ + G + +L A D +R AAI QL+I  ++           +    +A  A   AQ
Sbjct: 122 IAGKLKEKGKRPLLVACDVYRPAAIKQLQINGEKQGVPVFEMGDNNKPVDIAKAALAHAQ 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRLH +  +M  + ++   +        H  + V+DA TGQ+A+    
Sbjct: 182 KNNNNVVILDTAGRLHVDEDMMNELKEIKEAVN------VHQTILVVDAMTGQDAVNVAS 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+++TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 TFNEQIGIDGVVLTKLDGDTRGGAALSIKAVTGKPILYIGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|6900424|emb|CAB72034.1| signal recognition particle protein [Neisseria meningitidis]
          Length = 456

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 157/304 (51%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYAK 77
            + + +    + +I    +L +D ++E L +    L+ +D+ + V ++ +  +  K   +
Sbjct: 3   DNLTGRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFINNVKEKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT +GKL+
Sbjct: 63  EVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVA-PPAVVLMAGLQGAGKTTTVGKLA 121

Query: 133 KKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+ 
Sbjct: 122 RLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   + 
Sbjct: 182 HFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I 
Sbjct: 236 FNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|255505348|ref|ZP_05345603.3| signal recognition particle protein [Bryantella formatexigens DSM
           14469]
 gi|255268496|gb|EET61701.1| signal recognition particle protein [Bryantella formatexigens DSM
           14469]
          Length = 451

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 15/308 (4%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72
           +   F S S KL+    ++ S  RL +       +E++  L+ +D+   V ++ ++ +  
Sbjct: 1   MKMAFESLSDKLQNVFKNLRSKGRLTEADVKAALKEVKMALLEADVSFKVVKQFMKSVQE 60

Query: 73  KRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +    DV       Q V+  V+E +  ++   +       +    VI++VG+ G GKTT 
Sbjct: 61  RAVGADVMTGLNPGQMVIKIVNEELVALMGSETTEIALRPAGEITVIMMVGLQGAGKTTT 120

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+ K+   G   +LAA D +R AAI QL+I  ++   +            +A  A +
Sbjct: 121 TAKLAGKLKSKGRVPLLAACDVYRPAAIQQLQINGEKQGIEVFSMGDKQSPVNIARAAVE 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+++ ++V+I+DTAGRLH +  +M  + ++   +           + V+DA TGQ+A+ 
Sbjct: 181 HAKSRNMNVVILDTAGRLHVDEEMMDELVQIKEAVH------VDQTILVVDAMTGQDAVN 234

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             EMF+   G  G+I+TK+DG +RGG  + I  T   P+ ++G+GE ++DLE F     +
Sbjct: 235 VSEMFNEKIGIDGVILTKLDGDSRGGAALSIRATCGKPILYVGMGEKLSDLEQFYPDRMA 294

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 295 SRILGMGD 302


>gi|312898910|ref|ZP_07758298.1| signal recognition particle protein [Megasphaera micronuciformis
           F0359]
 gi|310620072|gb|EFQ03644.1| signal recognition particle protein [Megasphaera micronuciformis
           F0359]
          Length = 449

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S + +     +    +L +       +E+   L+ +D+  AV +  ++ +  K   
Sbjct: 3   FENLSERFQAAFKKLRGKGKLTEEDVNEALKEMRRALLEADVNFAVTKDFIKRVREKAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V     + Q V+  V + +  +L           S  P V+++ G+ G GKTT   KL
Sbjct: 63  EEVFSTLNAAQTVIKIVRDELTDLLGGTQSRITIS-SRPPTVVMLAGLQGAGKTTTAAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K+    G   +L A D +R AAI+QL++     +      +   D  A+A  A   A +
Sbjct: 122 AKRFVRQGKHPLLVACDVYRPAAIEQLRVLGKELNIPVYSEDDSKDPVAIAERAVPYATS 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRLH +  LM  + ++   +       PH +L V+DA TGQ+A+   E 
Sbjct: 182 HLCDVVIVDTAGRLHIDEDLMGELVRIKEDIH------PHEILLVVDAMTGQDAVTAAEA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+IMTK+DG ARGG  + +      P+ F+GV E  + LE F    +++ I 
Sbjct: 236 FDKALGIDGVIMTKLDGDARGGAALSVKAVTGKPIKFIGVSEKTDGLEEFHPDRYASRIL 295

Query: 312 GCLD 315
              D
Sbjct: 296 DLGD 299


>gi|15676217|ref|NP_273349.1| signal recognition particle protein [Neisseria meningitidis MC58]
 gi|304389131|ref|ZP_07371173.1| signal recognition particle protein [Neisseria meningitidis ATCC
           13091]
 gi|7225519|gb|AAF40746.1| signal recognition particle protein [Neisseria meningitidis MC58]
 gi|304336930|gb|EFM03122.1| signal recognition particle protein [Neisseria meningitidis ATCC
           13091]
 gi|316985236|gb|EFV64188.1| signal recognition particle protein [Neisseria meningitidis H44/76]
 gi|325135098|gb|EGC57726.1| signal recognition particle protein [Neisseria meningitidis M13399]
 gi|325141130|gb|EGC63633.1| signal recognition particle protein [Neisseria meningitidis CU385]
 gi|325199497|gb|ADY94952.1| signal recognition particle protein [Neisseria meningitidis H44/76]
          Length = 456

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ +  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFINNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNKALTELMGRENKTLDLSVA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     +  I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|56460828|ref|YP_156109.1| Signal recognition particle GTPase [Idiomarina loihiensis L2TR]
 gi|56179838|gb|AAV82560.1| Signal recognition particle GTPase [Idiomarina loihiensis L2TR]
          Length = 454

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + +  I    RL +        E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FENLSERLSQTLHSIGGRGRLTEDNIKETLREVRMALLEADVALPVVKDFIAKVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   + P   + +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVNKSLTPGQVFVKIVQSELEAAMGEANAPLQLN-TQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KVM+ + D +R AAI QL+  A++   +F  S        +A  A  QA+
Sbjct: 121 AKYLTERQKKKVMVVSADVYRPAAIKQLETLAEQVGVEFFPSSTDQKPVDIANAAIAQAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DV+++DTAGRL  +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 KQFIDVVLVDTAGRLAIDEDMMQEIQQLHSAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFSEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFLGVGEKNDALEPFHPDRVASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|317049261|ref|YP_004116909.1| signal recognition particle protein [Pantoea sp. At-9b]
 gi|316950878|gb|ADU70353.1| signal recognition particle protein [Pantoea sp. At-9b]
          Length = 453

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V ++ +  +  +   
Sbjct: 2   FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV+      Q  +  V   + + +   +   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HDVNKSLTPGQEFIKIVRNELVEAMGAENNALNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A +   DF  S++      +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIRQLETLAQQVGVDFCPSDLSQKPVDIVNNALKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LQFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ F+GVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|148263169|ref|YP_001229875.1| signal recognition particle-docking protein FtsY [Geobacter
           uraniireducens Rf4]
 gi|146396669|gb|ABQ25302.1| signal recognition particle-docking protein FtsY [Geobacter
           uraniireducens Rf4]
          Length = 340

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 119/302 (39%), Positives = 183/302 (60%), Gaps = 3/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  +L +G + T   +   I  ++   +++D    EELE++LI +D+GV    +++  L
Sbjct: 40  GFFERLKRGLSKTHESIVGRIDTLLLGKKQIDADTLEELEEILITADMGVKTTVELIRTL 99

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +    ++     L   + + I   L   +   + + +  P+VILV+GVNGVGKTT IG
Sbjct: 100 EQRLKRNELQDGEALKKALKDEITARLSQHTTALDVNAA-SPYVILVIGVNGVGKTTTIG 158

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K    G KV+LAAGDTFR+AA +QL++W +R  AD V  + GSD +A+ ++A K A
Sbjct: 159 KLAAKFRSEGKKVLLAAGDTFRAAAAEQLEVWGNRVGADVVRHKEGSDPSAVVFDACKAA 218

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+  D+L+IDTAGRLH    LM  + K+ RVL+R  P APH  + +LDA TGQNA+ Q 
Sbjct: 219 LARNSDILLIDTAGRLHTKVNLMEEMKKIRRVLEREIPGAPHETMLILDAATGQNAISQA 278

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F   A  +G+++TK+DGTA+GG ++ +     IPV ++GVGEG++DL  F    F   
Sbjct: 279 KLFKEAAQVSGVVLTKLDGTAKGGIVVAVSHEFAIPVRYIGVGEGVDDLREFDPLQFVEA 338

Query: 310 IT 311
           I 
Sbjct: 339 IF 340


>gi|291550677|emb|CBL26939.1| signal recognition particle protein [Ruminococcus torques L2-14]
          Length = 451

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 152/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++ S  RL +       +E++  L+ +D+   V +  ++++  +  
Sbjct: 2   AFDSLSEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKGFIKDVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +            VI++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEELVKLMGSETTEIKLQPGSAITVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G K +L A D +R AAI QL+I A++   +       +  A +A  A + A 
Sbjct: 122 LAGKFKLKGKKPLLVACDVYRPAAIKQLEINAEKQGVEMFSMGDKNKPADIAKAAVEHAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++I+DTAGRLH +  +MA + ++   ++       H  + V+DA TGQ+A+    
Sbjct: 182 KNGNNIVILDTAGRLHVDEDMMAELQEIKEAVE------VHQTILVVDAMTGQDAVNVAS 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 SFNDKIGIDGVIVTKLDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|24113948|ref|NP_708458.1| signal recognition particle protein [Shigella flexneri 2a str. 301]
 gi|30064009|ref|NP_838180.1| signal recognition particle protein [Shigella flexneri 2a str.
           2457T]
 gi|24053055|gb|AAN44165.1| GTP-binding export factor binds to signal sequence, GTP and RNA
           [Shigella flexneri 2a str. 301]
 gi|30042265|gb|AAP17990.1| GTP-binding export factor binds to signal sequence, GTP and RNA
           [Shigella flexneri 2a str. 2457T]
 gi|281602019|gb|ADA75003.1| GTP-binding export factor binds to signal sequence, GTP and RNA
           [Shigella flexneri 2002017]
 gi|313648288|gb|EFS12732.1| signal recognition particle protein [Shigella flexneri 2a str.
           2457T]
 gi|332753356|gb|EGJ83736.1| signal recognition particle protein [Shigella flexneri 4343-70]
 gi|332755593|gb|EGJ85956.1| signal recognition particle protein [Shigella flexneri 2747-71]
 gi|332765588|gb|EGJ95801.1| signal recognition particle protein [Shigella flexneri 2930-71]
 gi|332999385|gb|EGK18970.1| signal recognition particle protein [Shigella flexneri VA-6]
 gi|333000795|gb|EGK20369.1| signal recognition particle protein [Shigella flexneri K-218]
 gi|333000982|gb|EGK20552.1| signal recognition particle protein [Shigella flexneri K-272]
 gi|333015514|gb|EGK34853.1| signal recognition particle protein [Shigella flexneri K-227]
 gi|333015805|gb|EGK35141.1| signal recognition particle protein [Shigella flexneri K-304]
          Length = 453

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
              + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GNFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|269101890|ref|ZP_06154587.1| signal recognition particle subunit Ffh SRP54 [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161788|gb|EEZ40284.1| signal recognition particle subunit Ffh SRP54 [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 455

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL D        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVNRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   S  P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVSKSLTPGQEFIKIVQAELEAVMGEQNEELNL-ASQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +   K + + + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKVLKERNKKKVLVVSADVYRPAAIKQLETLATDLGVDFFPSTPDQKPVDIAKAAVAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +S +M  I  + +VL       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDSEMMDEIKDVHQVLN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|120555223|ref|YP_959574.1| signal recognition particle protein [Marinobacter aquaeolei VT8]
 gi|120325072|gb|ABM19387.1| signal recognition particle subunit FFH/SRP54 (srp54) [Marinobacter
           aquaeolei VT8]
          Length = 485

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 90/310 (29%), Positives = 156/310 (50%), Gaps = 17/310 (5%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELL 71
           + +  F +   +L   +  I    RL DD +++ L +    L+ +D+ + V +  +E + 
Sbjct: 26  RKSNMFENLQDRLSGSLRKISGQARLTDDNIKDTLREVRMALLEADVALPVVKAFIEGVR 85

Query: 72  TKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +   ++V       Q  +  V + + +++   ++  N   +  P VI++ G+ G GKTT
Sbjct: 86  ERAIGQEVQRSLTPGQVFVKVVQQELERVMGEGNESLNL-ATRPPAVIMMAGLQGAGKTT 144

Query: 127 VIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
            + KLS+ +       V++ + D +R AAI QL+  A     +F  S    D   +A  A
Sbjct: 145 TVAKLSRFLKEREKKSVLVVSADIYRPAAIRQLETLAGEVGVEFFPSTTEQDPVDIANGA 204

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+ K +DV+I+DTAGRLH +  +M  IG++ + +       P   L V+DA TGQ+A
Sbjct: 205 IEAARRKHIDVVILDTAGRLHVDEQMMGEIGRLHKAVN------PVETLFVVDAMTGQDA 258

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
               + F+     TG+++TK DG ARGG  + +      P+ FLG+GE  + LEPF    
Sbjct: 259 ANTAKAFNDALPLTGVVLTKTDGDARGGAALSVRHITGKPIKFLGIGEKSDALEPFYPDR 318

Query: 306 FSAVITGCLD 315
            ++ I G  D
Sbjct: 319 VASRILGMGD 328


>gi|260577029|ref|ZP_05845009.1| signal recognition particle-docking protein FtsY [Rhodobacter sp.
           SW2]
 gi|259020785|gb|EEW24101.1| signal recognition particle-docking protein FtsY [Rhodobacter sp.
           SW2]
          Length = 339

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 131/338 (38%), Positives = 200/338 (59%), Gaps = 36/338 (10%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI----------------------------------- 35
           +S+ +KL      +S ++ E +  +                                   
Sbjct: 1   MSFFKKLRDKMFRSSDRISEELDALVEADAPAVAAPTPAAAETAAAKPGILGRLLGQSVE 60

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
            S R LDD + E LE++LI +D+GV  A ++   +   R  K VS   +   ++  I ++
Sbjct: 61  TSRRVLDDAMLERLEEVLIEADMGVDCALRVTANIAEGRMGKRVSTAELKEALATEIARI 120

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + P+++P     S RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA+
Sbjct: 121 MTPVARPLPLYPS-RPQVVLVVGVNGSGKTTTIGKLASQFKAAGKSVVIAAGDTFRAAAV 179

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL++W  R     + +  GSD A+LA++A  +AQA   D+L+IDTAGRL N + LM  +
Sbjct: 180 EQLQVWGQRAGVPVLTAPEGSDPASLAFDAMTKAQADGADLLMIDTAGRLQNRADLMEEL 239

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K++RV+++ DP APH+ + VLDATTGQNA+ QVE+F  +A  +GL+MTK+DGTA+GG L
Sbjct: 240 SKIVRVIRKKDPDAPHNTILVLDATTGQNAINQVEIFRKLADVSGLVMTKLDGTAKGGIL 299

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           + +     +P++ +GVGE I+DL PF  +DF+  + G 
Sbjct: 300 VALADKFGLPIHAIGVGEQIDDLAPFDPEDFARALVGL 337


>gi|332754035|gb|EGJ84407.1| signal recognition particle protein [Shigella flexneri K-671]
          Length = 340

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
              + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GNFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|261378491|ref|ZP_05983064.1| signal recognition particle protein [Neisseria cinerea ATCC 14685]
 gi|269145034|gb|EEZ71452.1| signal recognition particle protein [Neisseria cinerea ATCC 14685]
          Length = 456

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +    + +I    +L +D ++E L +    L+ +D+ + V ++ V  +  +   
Sbjct: 2   LDNLTSRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNTVKEQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   S  P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEVVGSLTPDQAFIGVVNQALVELMGKENKTLDLSVS-PPAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+    
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|331091002|ref|ZP_08339844.1| signal recognition particle protein [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405224|gb|EGG84760.1| signal recognition particle protein [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 449

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 148/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++ S  RL +        E++  L+ +D+   V +  ++++  +  
Sbjct: 2   AFDSLTEKLQNVFKNLRSKGRLTEDDVKTALREVKMALLEADVNFKVVKGFIKDVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +     +      VI++ G+ G GKTT   K
Sbjct: 62  GQDVMSGLNPGQMVIKIVNEELVKLMGSETTEIKLEPGQATTVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G K +L A D +R AAI QL++  ++   +            +A  A + A 
Sbjct: 122 LAGKFKLKGKKPLLVACDVYRPAAIKQLQVNGEKQGVEVFTMGENHKPVNIAKAALEHAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++I+DTAGRLH +  +M  + ++   +        H  + V+DA TGQ+A+    
Sbjct: 182 KNGNNIVILDTAGRLHVDEEMMEELQQIKEAVT------VHQTILVVDAMTGQDAVNVAG 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P++++G+GE ++DLE F     ++ I
Sbjct: 236 TFNDKIGIDGVIVTKLDGDTRGGAALSIRAVTGKPIFYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|240947853|ref|ZP_04752293.1| signal recognition particle GTPase [Actinobacillus minor NM305]
 gi|240297815|gb|EER48251.1| signal recognition particle GTPase [Actinobacillus minor NM305]
          Length = 463

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLKNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQAELEKAMGEANEGLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVEIAEAALKHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|254492590|ref|ZP_05105761.1| signal recognition particle protein [Methylophaga thiooxidans
           DMS010]
 gi|224462111|gb|EEF78389.1| signal recognition particle protein [Methylophaga thiooxydans
           DMS010]
          Length = 455

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    R+ +        E+   L+ +D+ + V +  V+ +  +   
Sbjct: 2   FDSLSERLGGTLKKLRGQGRITEDNVKETLREVRMALLEADVALPVVKAFVDRVKERAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  V++ +  ++   ++  N +    P VIL+ G+ G GKTT + KL
Sbjct: 62  QDVLRSLTPGQALVKVVNDELVAVMGEANEGLNLNM-QPPAVILMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           S+ + +   K ++  + D +R AAIDQL+  AD   A F  S+   +   +A  A +QA+
Sbjct: 121 SRWLKERDRKSVMVASTDVYRPAAIDQLQTLADEVDAKFFPSQSDQNPVDIAKAAIEQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDV+IIDTAGRLH +  +M+ I ++   +       P   L  +D+ TGQ+A    +
Sbjct: 181 RDYVDVVIIDTAGRLHIDDDMMSEIKQIHAAIN------PIETLFTVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ F+GVGE    LEPF      + I
Sbjct: 235 AFNEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFHPDRVVSRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|170765626|ref|ZP_02900437.1| signal recognition particle protein [Escherichia albertii TW07627]
 gi|170124772|gb|EDS93703.1| signal recognition particle protein [Escherichia albertii TW07627]
          Length = 453

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|15803132|ref|NP_289163.1| signal recognition particle protein [Escherichia coli O157:H7
           EDL933]
 gi|15832727|ref|NP_311500.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130531|ref|NP_417101.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26248973|ref|NP_755013.1| signal recognition particle protein [Escherichia coli CFT073]
 gi|74313200|ref|YP_311619.1| signal recognition particle protein [Shigella sonnei Ss046]
 gi|82545154|ref|YP_409101.1| signal recognition particle protein [Shigella boydii Sb227]
 gi|89109411|ref|AP_003191.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli str. K-12 substr. W3110]
 gi|91211944|ref|YP_541930.1| signal recognition particle protein [Escherichia coli UTI89]
 gi|110642771|ref|YP_670501.1| signal recognition particle protein [Escherichia coli 536]
 gi|117624832|ref|YP_853745.1| signal recognition particle protein [Escherichia coli APEC O1]
 gi|157159233|ref|YP_001463929.1| signal recognition particle protein [Escherichia coli E24377A]
 gi|157162086|ref|YP_001459404.1| signal recognition particle protein [Escherichia coli HS]
 gi|168762402|ref|ZP_02787409.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768698|ref|ZP_02793705.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773463|ref|ZP_02798470.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778588|ref|ZP_02803595.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789512|ref|ZP_02814519.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC869]
 gi|168801727|ref|ZP_02826734.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC508]
 gi|170019113|ref|YP_001724067.1| signal recognition particle protein [Escherichia coli ATCC 8739]
 gi|170082214|ref|YP_001731534.1| Signal recognition particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|187730941|ref|YP_001881400.1| signal recognition particle protein [Shigella boydii CDC 3083-94]
 gi|188494435|ref|ZP_03001705.1| signal recognition particle protein [Escherichia coli 53638]
 gi|191169064|ref|ZP_03030827.1| signal recognition particle protein [Escherichia coli B7A]
 gi|193064057|ref|ZP_03045142.1| signal recognition particle protein [Escherichia coli E22]
 gi|194430165|ref|ZP_03062666.1| signal recognition particle protein [Escherichia coli B171]
 gi|194439372|ref|ZP_03071450.1| signal recognition particle protein [Escherichia coli 101-1]
 gi|208806160|ref|ZP_03248497.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813814|ref|ZP_03255143.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819384|ref|ZP_03259704.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398002|ref|YP_002272081.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920085|ref|YP_002294169.1| signal recognition particle protein [Escherichia coli SE11]
 gi|215487960|ref|YP_002330391.1| signal recognition particle protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327115|ref|ZP_03443198.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547871|ref|YP_002381662.1| signal recognition particle protein [Escherichia fergusonii ATCC
           35469]
 gi|218559530|ref|YP_002392443.1| signal recognition particle protein [Escherichia coli S88]
 gi|218690728|ref|YP_002398940.1| signal recognition particle protein [Escherichia coli ED1a]
 gi|218696234|ref|YP_002403901.1| signal recognition particle protein [Escherichia coli 55989]
 gi|218706111|ref|YP_002413630.1| signal recognition particle protein [Escherichia coli UMN026]
 gi|227888176|ref|ZP_04005981.1| signal recognition particle protein [Escherichia coli 83972]
 gi|237706802|ref|ZP_04537283.1| signal recognition particle protein [Escherichia sp. 3_2_53FAA]
 gi|238901770|ref|YP_002927566.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli BW2952]
 gi|253772496|ref|YP_003035327.1| signal recognition particle protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037686|ref|ZP_04871744.1| signal recognition particle protein [Escherichia sp. 1_1_43]
 gi|254162580|ref|YP_003045688.1| signal recognition particle protein [Escherichia coli B str.
           REL606]
 gi|254794556|ref|YP_003079393.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019571|ref|ZP_05433436.1| signal recognition particle protein [Shigella sp. D9]
 gi|256024863|ref|ZP_05438728.1| signal recognition particle protein [Escherichia sp. 4_1_40B]
 gi|260845291|ref|YP_003223069.1| signal recognition particle ffs [Escherichia coli O103:H2 str.
           12009]
 gi|261227493|ref|ZP_05941774.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255687|ref|ZP_05948220.1| signal recognition particle ffs [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283882|ref|YP_003500700.1| Signal recognition particle protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|293406117|ref|ZP_06650043.1| signal recognition particle protein [Escherichia coli FVEC1412]
 gi|293412000|ref|ZP_06654723.1| signal recognition particle protein [Escherichia coli B354]
 gi|293415881|ref|ZP_06658521.1| signal recognition particle protein [Escherichia coli B185]
 gi|293448960|ref|ZP_06663381.1| signal recognition particle protein [Escherichia coli B088]
 gi|298381850|ref|ZP_06991447.1| signal recognition particle protein [Escherichia coli FVEC1302]
 gi|300900204|ref|ZP_07118392.1| signal recognition particle protein [Escherichia coli MS 198-1]
 gi|300905070|ref|ZP_07122879.1| signal recognition particle protein [Escherichia coli MS 84-1]
 gi|300921154|ref|ZP_07137533.1| signal recognition particle protein [Escherichia coli MS 115-1]
 gi|300925602|ref|ZP_07141472.1| signal recognition particle protein [Escherichia coli MS 182-1]
 gi|300930665|ref|ZP_07146051.1| signal recognition particle protein [Escherichia coli MS 187-1]
 gi|300940948|ref|ZP_07155472.1| signal recognition particle protein [Escherichia coli MS 21-1]
 gi|300949005|ref|ZP_07163058.1| signal recognition particle protein [Escherichia coli MS 116-1]
 gi|300957395|ref|ZP_07169609.1| signal recognition particle protein [Escherichia coli MS 175-1]
 gi|300986820|ref|ZP_07177809.1| signal recognition particle protein [Escherichia coli MS 45-1]
 gi|300990720|ref|ZP_07179305.1| signal recognition particle protein [Escherichia coli MS 200-1]
 gi|301026378|ref|ZP_07189824.1| signal recognition particle protein [Escherichia coli MS 69-1]
 gi|301026818|ref|ZP_07190220.1| signal recognition particle protein [Escherichia coli MS 196-1]
 gi|301050480|ref|ZP_07197359.1| signal recognition particle protein [Escherichia coli MS 185-1]
 gi|301305745|ref|ZP_07211832.1| signal recognition particle protein [Escherichia coli MS 124-1]
 gi|301326730|ref|ZP_07220044.1| signal recognition particle protein [Escherichia coli MS 78-1]
 gi|301644052|ref|ZP_07244068.1| signal recognition particle protein [Escherichia coli MS 146-1]
 gi|306812472|ref|ZP_07446670.1| signal recognition particle protein [Escherichia coli NC101]
 gi|307139331|ref|ZP_07498687.1| signal recognition particle protein [Escherichia coli H736]
 gi|307315078|ref|ZP_07594662.1| signal recognition particle protein [Escherichia coli W]
 gi|309794121|ref|ZP_07688545.1| signal recognition particle protein [Escherichia coli MS 145-7]
 gi|312965541|ref|ZP_07779772.1| signal recognition particle protein [Escherichia coli 2362-75]
 gi|312973148|ref|ZP_07787321.1| signal recognition particle protein [Escherichia coli 1827-70]
 gi|331643326|ref|ZP_08344457.1| signal recognition particle protein [Escherichia coli H736]
 gi|331648352|ref|ZP_08349440.1| signal recognition particle protein [Escherichia coli M605]
 gi|331654067|ref|ZP_08355067.1| signal recognition particle protein [Escherichia coli M718]
 gi|331658758|ref|ZP_08359700.1| signal recognition particle protein [Escherichia coli TA206]
 gi|331664175|ref|ZP_08365084.1| signal recognition particle protein [Escherichia coli TA143]
 gi|331669360|ref|ZP_08370206.1| signal recognition particle protein [Escherichia coli TA271]
 gi|331674050|ref|ZP_08374812.1| signal recognition particle protein [Escherichia coli TA280]
 gi|331678601|ref|ZP_08379275.1| signal recognition particle protein [Escherichia coli H591]
 gi|331684266|ref|ZP_08384858.1| signal recognition particle protein [Escherichia coli H299]
 gi|332280695|ref|ZP_08393108.1| signal recognition particle protein Ffh [Shigella sp. D9]
 gi|84028787|sp|P0AGD9|SRP54_ECO57 RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|84028788|sp|P0AGD8|SRP54_ECOL6 RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|84028789|sp|P0AGD7|SRP54_ECOLI RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog; AltName: Full=p48
 gi|12517035|gb|AAG57721.1|AE005491_1 GTP-binding export factor binds to signal sequence, GTP and RNA
           [Escherichia coli O157:H7 str. EDL933]
 gi|26109379|gb|AAN81581.1|AE016764_263 Signal recognition particle protein [Escherichia coli CFT073]
 gi|1788963|gb|AAC75659.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli str. K-12 substr. MG1655]
 gi|13362944|dbj|BAB36896.1| signal recognition particle protein Ffh [Escherichia coli O157:H7
           str. Sakai]
 gi|73856677|gb|AAZ89384.1| GTP-binding export factor binds to signal sequence, GTP and RNA
           [Shigella sonnei Ss046]
 gi|81246565|gb|ABB67273.1| GTP-binding export factor [Shigella boydii Sb227]
 gi|85675481|dbj|BAA16495.2| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli str. K12 substr. W3110]
 gi|91073518|gb|ABE08399.1| signal recognition particle protein [Escherichia coli UTI89]
 gi|110344363|gb|ABG70600.1| signal recognition particle protein [Escherichia coli 536]
 gi|115513956|gb|ABJ02031.1| signal recognition particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli APEC O1]
 gi|157067766|gb|ABV07021.1| signal recognition particle protein [Escherichia coli HS]
 gi|157081263|gb|ABV20971.1| signal recognition particle protein [Escherichia coli E24377A]
 gi|169754041|gb|ACA76740.1| signal recognition particle protein [Escherichia coli ATCC 8739]
 gi|169890049|gb|ACB03756.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli str. K-12 substr. DH10B]
 gi|187427933|gb|ACD07207.1| signal recognition particle protein [Shigella boydii CDC 3083-94]
 gi|187770557|gb|EDU34401.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188489634|gb|EDU64737.1| signal recognition particle protein [Escherichia coli 53638]
 gi|189003543|gb|EDU72529.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189362137|gb|EDU80556.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367273|gb|EDU85689.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370881|gb|EDU89297.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189376173|gb|EDU94589.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC508]
 gi|190900905|gb|EDV60691.1| signal recognition particle protein [Escherichia coli B7A]
 gi|192929292|gb|EDV82901.1| signal recognition particle protein [Escherichia coli E22]
 gi|194411790|gb|EDX28111.1| signal recognition particle protein [Escherichia coli B171]
 gi|194421734|gb|EDX37743.1| signal recognition particle protein [Escherichia coli 101-1]
 gi|208725961|gb|EDZ75562.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735091|gb|EDZ83778.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739507|gb|EDZ87189.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159402|gb|ACI36835.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209762528|gb|ACI79576.1| signal recognition particle protein Ffh [Escherichia coli]
 gi|209762530|gb|ACI79577.1| signal recognition particle protein Ffh [Escherichia coli]
 gi|209762532|gb|ACI79578.1| signal recognition particle protein Ffh [Escherichia coli]
 gi|209762534|gb|ACI79579.1| signal recognition particle protein Ffh [Escherichia coli]
 gi|209762536|gb|ACI79580.1| signal recognition particle protein Ffh [Escherichia coli]
 gi|209913344|dbj|BAG78418.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|215266032|emb|CAS10447.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli O127:H6 str. E2348/69]
 gi|217319482|gb|EEC27907.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352966|emb|CAU98766.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli 55989]
 gi|218355412|emb|CAQ88021.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia fergusonii ATCC 35469]
 gi|218366299|emb|CAR04050.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli S88]
 gi|218428292|emb|CAR09216.2| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli ED1a]
 gi|218433208|emb|CAR14106.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli UMN026]
 gi|222034312|emb|CAP77053.1| Signal recognition particle protein [Escherichia coli LF82]
 gi|226839310|gb|EEH71331.1| signal recognition particle protein [Escherichia sp. 1_1_43]
 gi|226899842|gb|EEH86101.1| signal recognition particle protein [Escherichia sp. 3_2_53FAA]
 gi|227834816|gb|EEJ45282.1| signal recognition particle protein [Escherichia coli 83972]
 gi|238863555|gb|ACR65553.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli BW2952]
 gi|242378205|emb|CAQ32980.1| protein component of the signal recognition particle (SRP), subunit
           of Signal Recognition Particle Protein Translocation
           System [Escherichia coli BL21(DE3)]
 gi|253323540|gb|ACT28142.1| signal recognition particle protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974481|gb|ACT40152.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli B str. REL606]
 gi|253978648|gb|ACT44318.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli BL21(DE3)]
 gi|254593956|gb|ACT73317.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli O157:H7 str. TW14359]
 gi|257760438|dbj|BAI31935.1| signal recognition particle ffs [Escherichia coli O103:H2 str.
           12009]
 gi|260448316|gb|ACX38738.1| signal recognition particle protein [Escherichia coli DH1]
 gi|281179656|dbj|BAI55986.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|284922556|emb|CBG35643.1| signal recognition particle protein [Escherichia coli 042]
 gi|290763755|gb|ADD57716.1| Signal recognition particle protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|291322050|gb|EFE61479.1| signal recognition particle protein [Escherichia coli B088]
 gi|291426123|gb|EFE99155.1| signal recognition particle protein [Escherichia coli FVEC1412]
 gi|291432070|gb|EFF05052.1| signal recognition particle protein [Escherichia coli B185]
 gi|291468771|gb|EFF11262.1| signal recognition particle protein [Escherichia coli B354]
 gi|294492947|gb|ADE91703.1| signal recognition particle protein [Escherichia coli IHE3034]
 gi|298276990|gb|EFI18506.1| signal recognition particle protein [Escherichia coli FVEC1302]
 gi|299879564|gb|EFI87775.1| signal recognition particle protein [Escherichia coli MS 196-1]
 gi|300297827|gb|EFJ54212.1| signal recognition particle protein [Escherichia coli MS 185-1]
 gi|300305688|gb|EFJ60208.1| signal recognition particle protein [Escherichia coli MS 200-1]
 gi|300315830|gb|EFJ65614.1| signal recognition particle protein [Escherichia coli MS 175-1]
 gi|300356261|gb|EFJ72131.1| signal recognition particle protein [Escherichia coli MS 198-1]
 gi|300395564|gb|EFJ79102.1| signal recognition particle protein [Escherichia coli MS 69-1]
 gi|300403021|gb|EFJ86559.1| signal recognition particle protein [Escherichia coli MS 84-1]
 gi|300407872|gb|EFJ91410.1| signal recognition particle protein [Escherichia coli MS 45-1]
 gi|300411904|gb|EFJ95214.1| signal recognition particle protein [Escherichia coli MS 115-1]
 gi|300418297|gb|EFK01608.1| signal recognition particle protein [Escherichia coli MS 182-1]
 gi|300451532|gb|EFK15152.1| signal recognition particle protein [Escherichia coli MS 116-1]
 gi|300454272|gb|EFK17765.1| signal recognition particle protein [Escherichia coli MS 21-1]
 gi|300461462|gb|EFK24955.1| signal recognition particle protein [Escherichia coli MS 187-1]
 gi|300838999|gb|EFK66759.1| signal recognition particle protein [Escherichia coli MS 124-1]
 gi|300846590|gb|EFK74350.1| signal recognition particle protein [Escherichia coli MS 78-1]
 gi|301077597|gb|EFK92403.1| signal recognition particle protein [Escherichia coli MS 146-1]
 gi|305854510|gb|EFM54948.1| signal recognition particle protein [Escherichia coli NC101]
 gi|306905507|gb|EFN36041.1| signal recognition particle protein [Escherichia coli W]
 gi|307554623|gb|ADN47398.1| GTP-binding export factor binds to signal sequence, GTP and RNA
           [Escherichia coli ABU 83972]
 gi|307625840|gb|ADN70144.1| signal recognition particle protein [Escherichia coli UM146]
 gi|308122026|gb|EFO59288.1| signal recognition particle protein [Escherichia coli MS 145-7]
 gi|309702990|emb|CBJ02321.1| signal recognition particle protein [Escherichia coli ETEC H10407]
 gi|310333090|gb|EFQ00304.1| signal recognition particle protein [Escherichia coli 1827-70]
 gi|312289789|gb|EFR17678.1| signal recognition particle protein [Escherichia coli 2362-75]
 gi|312947182|gb|ADR28009.1| signal recognition particle protein [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315061924|gb|ADT76251.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli W]
 gi|315137228|dbj|BAJ44387.1| signal recognition particle protein [Escherichia coli DH1]
 gi|315253137|gb|EFU33105.1| signal recognition particle protein [Escherichia coli MS 85-1]
 gi|315284814|gb|EFU44259.1| signal recognition particle protein [Escherichia coli MS 110-3]
 gi|315290949|gb|EFU50314.1| signal recognition particle protein [Escherichia coli MS 153-1]
 gi|315298671|gb|EFU57925.1| signal recognition particle protein [Escherichia coli MS 16-3]
 gi|315615309|gb|EFU95944.1| signal recognition particle protein [Escherichia coli 3431]
 gi|320177027|gb|EFW52048.1| Signal recognition particle, subunit Ffh SRP54 [Shigella
           dysenteriae CDC 74-1112]
 gi|320182476|gb|EFW57370.1| Signal recognition particle, subunit Ffh SRP54 [Shigella boydii
           ATCC 9905]
 gi|320183091|gb|EFW57953.1| Signal recognition particle, subunit Ffh SRP54 [Shigella flexneri
           CDC 796-83]
 gi|320188945|gb|EFW63604.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli
           O157:H7 str. EC1212]
 gi|320194774|gb|EFW69403.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli
           WV_060327]
 gi|320198383|gb|EFW72985.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli
           EC4100B]
 gi|320640792|gb|EFX10290.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           G5101]
 gi|320646137|gb|EFX15082.1| signal recognition particle protein [Escherichia coli O157:H- str.
           493-89]
 gi|320651434|gb|EFX19835.1| signal recognition particle protein [Escherichia coli O157:H- str.
           H 2687]
 gi|320657039|gb|EFX24862.1| signal recognition particle protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662703|gb|EFX30047.1| signal recognition particle protein [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667520|gb|EFX34444.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323159129|gb|EFZ45122.1| signal recognition particle protein [Escherichia coli E128010]
 gi|323167733|gb|EFZ53428.1| signal recognition particle protein [Shigella sonnei 53G]
 gi|323173073|gb|EFZ58704.1| signal recognition particle protein [Escherichia coli LT-68]
 gi|323184515|gb|EFZ69889.1| signal recognition particle protein [Escherichia coli 1357]
 gi|323188398|gb|EFZ73687.1| signal recognition particle protein [Escherichia coli RN587/1]
 gi|323377496|gb|ADX49764.1| signal recognition particle protein [Escherichia coli KO11]
 gi|323935676|gb|EGB31993.1| signal recognition particle protein [Escherichia coli E1520]
 gi|323941372|gb|EGB37556.1| signal recognition particle protein [Escherichia coli E482]
 gi|323946263|gb|EGB42296.1| signal recognition particle protein [Escherichia coli H120]
 gi|323951191|gb|EGB47067.1| signal recognition particle protein [Escherichia coli H252]
 gi|323957023|gb|EGB52749.1| signal recognition particle protein [Escherichia coli H263]
 gi|323960532|gb|EGB56161.1| signal recognition particle protein [Escherichia coli H489]
 gi|323963919|gb|EGB59412.1| signal recognition particle protein [Escherichia coli M863]
 gi|323971447|gb|EGB66683.1| signal recognition particle protein [Escherichia coli TA007]
 gi|323978481|gb|EGB73564.1| signal recognition particle protein [Escherichia coli TW10509]
 gi|324012448|gb|EGB81667.1| signal recognition particle protein [Escherichia coli MS 60-1]
 gi|324016586|gb|EGB85805.1| signal recognition particle protein [Escherichia coli MS 117-3]
 gi|324111246|gb|EGC05228.1| signal recognition particle protein [Escherichia fergusonii B253]
 gi|324120067|gb|EGC13943.1| signal recognition particle protein [Escherichia coli E1167]
 gi|325496322|gb|EGC94181.1| signal recognition particle protein [Escherichia fergusonii ECD227]
 gi|326344362|gb|EGD68120.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli
           O157:H7 str. 1125]
 gi|326347731|gb|EGD71448.1| Signal recognition particle, subunit Ffh SRP54 [Escherichia coli
           O157:H7 str. 1044]
 gi|327252315|gb|EGE63987.1| signal recognition particle protein [Escherichia coli STEC_7v]
 gi|330912373|gb|EGH40883.1| signal recognition particle, subunit Ffh SRP54 [Escherichia coli
           AA86]
 gi|331036797|gb|EGI09021.1| signal recognition particle protein [Escherichia coli H736]
 gi|331042099|gb|EGI14241.1| signal recognition particle protein [Escherichia coli M605]
 gi|331047449|gb|EGI19526.1| signal recognition particle protein [Escherichia coli M718]
 gi|331053340|gb|EGI25369.1| signal recognition particle protein [Escherichia coli TA206]
 gi|331058632|gb|EGI30610.1| signal recognition particle protein [Escherichia coli TA143]
 gi|331063028|gb|EGI34941.1| signal recognition particle protein [Escherichia coli TA271]
 gi|331068789|gb|EGI40182.1| signal recognition particle protein [Escherichia coli TA280]
 gi|331073431|gb|EGI44752.1| signal recognition particle protein [Escherichia coli H591]
 gi|331077881|gb|EGI49087.1| signal recognition particle protein [Escherichia coli H299]
 gi|332088118|gb|EGI93243.1| signal recognition particle protein [Shigella boydii 5216-82]
 gi|332089181|gb|EGI94288.1| signal recognition particle protein [Shigella dysenteriae 155-74]
 gi|332092111|gb|EGI97189.1| signal recognition particle protein [Shigella boydii 3594-74]
 gi|332103047|gb|EGJ06393.1| signal recognition particle protein Ffh [Shigella sp. D9]
 gi|332344479|gb|AEE57813.1| signal recognition particle protein [Escherichia coli UMNK88]
          Length = 453

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|292900328|ref|YP_003539697.1| signal recognition particle protein [Erwinia amylovora ATCC 49946]
 gi|291200176|emb|CBJ47304.1| signal recognition particle protein [Erwinia amylovora ATCC 49946]
          Length = 453

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFIGRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   +   +   +   N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  QEVNKSLTPGQEFVKIVKNELVAAMGEENNTLNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++      +   A +QA+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFCPSDLTQQPVDIVKNALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ F+GVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPDRIASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|309378177|emb|CBX23185.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 456

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNKALTELMGKENKTLDLSVA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+   +   +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQIGVDFFPSDTNQNPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVS------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     +  I
Sbjct: 235 AFNEALPLTGIVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|311278432|ref|YP_003940663.1| signal recognition particle protein [Enterobacter cloacae SCF1]
 gi|308747627|gb|ADO47379.1| signal recognition particle protein [Enterobacter cloacae SCF1]
          Length = 453

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEENVKETLREVRMALLEADVALPVVRDFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQSLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A +   DF  S++      +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFFPSDVAQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|303249995|ref|ZP_07336197.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307253425|ref|ZP_07535296.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651058|gb|EFL81212.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306859104|gb|EFM91146.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 463

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  L  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVNKSLTPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++ RVL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|162148087|ref|YP_001602548.1| cell division protein ftsY [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542701|ref|YP_002274930.1| signal recognition particle-docking protein FtsY [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786664|emb|CAP56247.1| Cell division protein ftsY [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530378|gb|ACI50315.1| signal recognition particle-docking protein FtsY [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 326

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 143/303 (47%), Positives = 204/303 (67%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +L +  +L  G + ++ KL  GI  + + R+LDD   EELEDLLI +D+G AVA +I+E 
Sbjct: 2   ALGFFSRLKAGLSRSTQKLGGGIAAVFTRRKLDDEALEELEDLLISADLGPAVAARIIES 61

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               R+  +V+   V   +S  I ++L P++ PF  D   +PHV+LVVGVNG GKTT IG
Sbjct: 62  FRHSRFGAEVTDDEVRDALSAEIAQVLEPVAVPFVPDPQRKPHVVLVVGVNGTGKTTTIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+++   + GLKVM+ AGDTFR+AA++QL++W  R  A  +     +DAA LA+EA K+ 
Sbjct: 122 KMARYYGEQGLKVMMVAGDTFRAAAVEQLQVWGQRVGAPVIAGPPNADAAGLAFEALKRG 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA+  D+L+IDTAGRLHN   LM  + K+IRV+++ D  APHSVL VLDATTGQNA+ QV
Sbjct: 182 QAEGCDLLLIDTAGRLHNKGALMEELAKIIRVMRKFDESAPHSVLLVLDATTGQNAIEQV 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  +   TGL++TK+DG+ARGG ++ +  T  +PV+ +GVGE   DL PF A+ F+  
Sbjct: 242 RVFKELVNVTGLVVTKLDGSARGGIVVALADTFGLPVHAVGVGEQAEDLRPFSAEAFARG 301

Query: 310 ITG 312
           + G
Sbjct: 302 LVG 304


>gi|291519528|emb|CBK74749.1| signal recognition particle-docking protein FtsY [Butyrivibrio
           fibrisolvens 16/4]
          Length = 312

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 182/304 (59%), Gaps = 4/304 (1%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            + + ++L KG   T     + +  I +    +D+   EELE++LI  DIGV   + I++
Sbjct: 7   KIPFWKRLVKGLTKTRDNFIKSMDYIFNGFSNIDEDFYEELEEVLIMGDIGVRTTETILD 66

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +L      + +       +   LI+++   +S    ++DF  +  V+LV+GVNGVGKTT 
Sbjct: 67  DLKEAVKKEHIKEPAECKEF--LINEIKQQMSLDETSFDFEKKTSVVLVIGVNGVGKTTT 124

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ K+   G KVM+A  DTFR+AA DQLK WADR  ADFV    GSD AA+ Y+A  
Sbjct: 125 IGKLAGKLKANGKKVMVAGADTFRAAASDQLKEWADRAGADFVGGPEGSDPAAVVYDAVH 184

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +DVL++DTAGRLHN   LM  + K+   + +  P A    L VLD TTGQNAL 
Sbjct: 185 AAKARGIDVLLVDTAGRLHNKKNLMNELSKINNTITKEFPEAYRETLIVLDGTTGQNALV 244

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F  V   +G+++TK+DGTA+GG  I I    K+PV ++GVGE I+DLE F A +F 
Sbjct: 245 QAKEFSEVTDISGIVLTKLDGTAKGGIAIAIQSELKLPVKYIGVGETIDDLEKFNADEFV 304

Query: 308 AVIT 311
             + 
Sbjct: 305 NALF 308


>gi|227530556|ref|ZP_03960605.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus vaginalis
           ATCC 49540]
 gi|227349562|gb|EEJ39853.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus vaginalis
           ATCC 49540]
          Length = 484

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  +    ++ +  +RE   E+   L+ +D+  AV +  V+++  K  
Sbjct: 2   AFEGLTDRLQKAMEKLRRKPKVTEADLRETMREIRLALLEADVNFAVVKDFVKKVREKAA 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + +++   + P N   SH P VI++VG+ G GKTT  GK
Sbjct: 62  GAEVLKGLNPAQQIVKIVNDELTELMGEEAVPLNKS-SHIPTVIMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++ +    + +  A D +R AAI QLK  AD+            D   +  +  + A
Sbjct: 121 LALRLKNEDKARPLFIAADVYRPAAITQLKQVADQIDVPVFEKGTDVDPVEIVRQGMEVA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +IIDTAGRL  +  LM  +  + +++       P  +L V+D+ TGQNA+   
Sbjct: 181 KQNHNDYVIIDTAGRLQIDEQLMDELANIKQLVN------PDEILLVIDSMTGQNAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 235 QGFDDKLDITGVVLTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|254428353|ref|ZP_05042060.1| signal recognition particle protein [Alcanivorax sp. DG881]
 gi|196194522|gb|EDX89481.1| signal recognition particle protein [Alcanivorax sp. DG881]
          Length = 503

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  +     L +        E+   L+ +D+ + V ++ VE++  K   
Sbjct: 2   FENLTDRLGSSLKSLAGQGSLTEDNIRDTLREVRKALLEADVALPVVKEFVEQVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ +   +   +   +   +  P +IL+ G+ G GKTT + KL
Sbjct: 62  QEVLQSLNPGQAFVKIVNDELVHTMGDANDALDL-ATKPPAIILMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM+ + D +R AAI+QLK  A     +F  S    D   +A  A ++A+
Sbjct: 121 ARFLQEREKKKVMVVSADVYRPAAIEQLKTLAGEVETNFFPSTGDQDPVDIANAALEEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVLI+DTAGRLH +  +M+ I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 RRYMDVLIVDTAGRLHVDEDMMSEIKRLHGAIS------PVETLFVVDAMTGQDAANTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG +RGG  + +      P+ F+G+GE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKADGDSRGGAALSVRQLTGKPIKFIGMGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|116750418|ref|YP_847105.1| signal recognition particle protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116750460|ref|YP_847147.1| signal recognition particle protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699482|gb|ABK18670.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699524|gb|ABK18712.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Syntrophobacter fumaroxidans MPOB]
          Length = 454

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 155/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S K +    ++    +L ++ +RE L +    L+ +D+   VA+  V  +  +   
Sbjct: 2   FDNLSDKFQRIFKNLRGQGKLTEENIREALREVRMALLEADVHYKVAKDFVTGIAERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V+E +  ++   S+P        P  +L+VG+ G GKTT   KL
Sbjct: 62  QEVMTSLTPGQQVIKIVNEALTDLMGGQSEPLRL-IGKPPVCLLMVGLQGSGKTTTTAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K+     K  L   D +R AAI+QL   A + +     S +      +A EA   A+ 
Sbjct: 121 ARKLVQEHRKPCLVPADVYRPAAIEQLVTLAGQINLPVYPSTVRQKPEEIAREAQGYARE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D LI+DTAGRLH ++ LM  +G++  +L+         +L V DA TGQ+A++    
Sbjct: 181 HNCDTLIVDTAGRLHIDTELMGELGRLKEILQPA------EILLVADAMTGQDAVQVASA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G +G+I+TK+DG ARGG  + I    + P+ F+G+GE ++ LE F     S+ I 
Sbjct: 235 FHETLGLSGVILTKLDGDARGGAALSIRAVTRCPIKFIGLGEKLDALEVFHPDRMSSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|260433210|ref|ZP_05787181.1| signal recognition particle-docking protein FtsY [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417038|gb|EEX10297.1| signal recognition particle-docking protein FtsY [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 383

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 132/286 (46%), Positives = 195/286 (68%), Gaps = 1/286 (0%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
              G    +  R LDD + E+LE+LLI SD+GV  A ++   +   RY + +S Q +   
Sbjct: 96  FGRGDAGPVVRRTLDDDMLEQLEELLIASDMGVDTALRVTANMAEGRYGRKLSTQEIKQL 155

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           +++ I +++ P++KP    +  RP V+LVVGVNG GKTT IGKL+ +   AG KV++AAG
Sbjct: 156 LAQEIARVMEPVAKPMPL-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAG 214

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QL++W DR     + +  GSD A+LA++A  +AQA   D+L+IDTAGRL N
Sbjct: 215 DTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDALTKAQADGADLLMIDTAGRLQN 274

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + K++RV++++D  APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+D
Sbjct: 275 RADLMEELAKIVRVIRKIDETAPHNTLLVLDATTGQNALSQVETFRKLADVSGLVMTKLD 334

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           GTA+GG L+ +     +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 335 GTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 380


>gi|260856699|ref|YP_003230590.1| signal recognition particle ffs [Escherichia coli O26:H11 str.
           11368]
 gi|260869291|ref|YP_003235693.1| signal recognition particle ffs [Escherichia coli O111:H- str.
           11128]
 gi|257755348|dbj|BAI26850.1| signal recognition particle ffs [Escherichia coli O26:H11 str.
           11368]
 gi|257765647|dbj|BAI37142.1| signal recognition particle ffs [Escherichia coli O111:H- str.
           11128]
 gi|323156264|gb|EFZ42423.1| signal recognition particle protein [Escherichia coli EPECa14]
 gi|323177264|gb|EFZ62852.1| signal recognition particle protein [Escherichia coli 1180]
          Length = 453

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|110679220|ref|YP_682227.1| signal recognition particle-docking protein FtsY [Roseobacter
           denitrificans OCh 114]
 gi|109455336|gb|ABG31541.1| signal recognition particle-docking protein FtsY [Roseobacter
           denitrificans OCh 114]
          Length = 512

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 126/278 (45%), Positives = 190/278 (68%), Gaps = 1/278 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           +  R LDD + E+LE+LLI +D+GV  A ++V  +   R  K +SVQ +   ++  I ++
Sbjct: 233 VVRRTLDDDMLEQLEELLISADMGVDTALRVVANMAEGRVGKKLSVQEIKELLASEIAQI 292

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + P++KP    +   P V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA+
Sbjct: 293 MEPVAKPLPL-YPRTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKKVVIAAGDTFRAAAV 351

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL++W DR     + +  GSD A+LA++A  +AQ    D+L+IDTAGRL N + LM  +
Sbjct: 352 EQLQVWGDRAGVPVLTAPEGSDPASLAFDAMLKAQRDGADLLLIDTAGRLQNRTDLMEEL 411

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K++RV+++ D  APH+ L VLDATTGQNAL QV++F  ++  +GL+MTK+DGTA+GG L
Sbjct: 412 AKIVRVIRKNDETAPHNTLLVLDATTGQNALNQVKVFSDISDVSGLVMTKLDGTAKGGVL 471

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           + +     +P++ +GVGE I+DL+ F  +DF+  + G 
Sbjct: 472 VALADKFGLPIHAIGVGEQIDDLDAFDPEDFADALMGL 509


>gi|195939662|ref|ZP_03085044.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4024]
          Length = 453

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|126209206|ref|YP_001054431.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae L20]
 gi|190151079|ref|YP_001969604.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|307246672|ref|ZP_07528742.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307251039|ref|ZP_07532963.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307255656|ref|ZP_07537460.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257838|ref|ZP_07539595.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307260108|ref|ZP_07541818.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307264443|ref|ZP_07546029.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097998|gb|ABN74826.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|189916210|gb|ACE62462.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|306852372|gb|EFM84607.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306856869|gb|EFM89001.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861333|gb|EFM93323.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306863744|gb|EFM95670.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865754|gb|EFM97632.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306870259|gb|EFN02017.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 463

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  L  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVNKSLTPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++ RVL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|261400534|ref|ZP_05986659.1| signal recognition particle protein [Neisseria lactamica ATCC
           23970]
 gi|269209797|gb|EEZ76252.1| signal recognition particle protein [Neisseria lactamica ATCC
           23970]
          Length = 456

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTGRFSNVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVADSLTPDQAFIGVVNKALTELMGKENKTLDLSVA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     +  I
Sbjct: 235 AFNEALPLTGIVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|300718048|ref|YP_003742851.1| Signal recognition particle protein (Fifty-four homolog) [Erwinia
           billingiae Eb661]
 gi|299063884|emb|CAX61004.1| Signal recognition particle protein (Fifty-four homolog) [Erwinia
           billingiae Eb661]
          Length = 453

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDNLTDRLSQSLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV+      Q  +  V   +   +   +   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QDVNKSLTPGQEFVKIVQSELVAAMGAENNTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++      +   A +QA+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFCPSDLSQKPVDIVKNALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ F+GVGE  + LEPF  +  ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFMGVGEKTDALEPFYPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|237729526|ref|ZP_04560007.1| signal recognition particle protein [Citrobacter sp. 30_2]
 gi|226908132|gb|EEH94050.1| signal recognition particle protein [Citrobacter sp. 30_2]
          Length = 453

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|324005826|gb|EGB75045.1| signal recognition particle protein [Escherichia coli MS 57-2]
          Length = 453

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+D+ TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|261820438|ref|YP_003258544.1| signal recognition particle protein [Pectobacterium wasabiae
           WPP163]
 gi|261604451|gb|ACX86937.1| signal recognition particle protein [Pectobacterium wasabiae
           WPP163]
          Length = 453

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELVSAMGEINAELNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +      KV++ + D +R AAI QL+  A +   DF  S+      A+   A + A+
Sbjct: 121 GKFLREKQKKKVLVVSADVYRPAAIKQLETLAQQVGVDFFPSDAQEKPLAIVERALQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|297517102|ref|ZP_06935488.1| signal recognition particle protein [Escherichia coli OP50]
          Length = 453

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+  +L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMVLLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|71738105|ref|YP_273611.1| signal recognition particle protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558658|gb|AAZ37869.1| signal recognition particle protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 501

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 149/316 (47%), Gaps = 19/316 (6%)

Query: 12  SWIRKLTKG--FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQK 65
            +   L     F + + +L + +  +    +L++        E+   L+ +D+ + V + 
Sbjct: 34  GFDESLKGSRMFENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKD 93

Query: 66  IVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            V  +  +    +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ 
Sbjct: 94  FVNNVKERAVGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLMLNVT-PPAVILMAGLQ 152

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT  GKL++ + +   K ++    D +R AAI QL+  A+     F  S+I     
Sbjct: 153 GAGKTTTAGKLARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPV 212

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +A  A K+A+ K +DV+I+DTAGRLH +  +M  I  +    K          L V+DA
Sbjct: 213 DIALAAIKEARLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATKPA------ETLFVVDA 266

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQ+A    + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LE
Sbjct: 267 MTGQDAANTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALE 326

Query: 300 PFVAKDFSAVITGCLD 315
           PF     ++ I G  D
Sbjct: 327 PFHPDRIASRILGMGD 342


>gi|212637491|ref|YP_002314016.1| cell division transporter substrate-binding protein FtsY
           [Shewanella piezotolerans WP3]
 gi|212558975|gb|ACJ31429.1| Cell division transporter substrate-binding protein FtsY
           [Shewanella piezotolerans WP3]
          Length = 528

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 189/303 (62%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +L +G   TS  +  G   I S +++DD + EELE+ L+ +D+GV    ++++ 
Sbjct: 216 KEGLFARLKRGLKRTSESIGSGFVGIFSGKKIDDDLFEELEEQLLIADVGVETTTRLIKN 275

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   K +     LYD+  + + K L P+S P   + +  P VIL+VGVNGVGKTT I
Sbjct: 276 LTEQASRKQLKDGEALYDLMRDEMQKTLDPVSVPLIPENADGPFVILMVGVNGVGKTTTI 335

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + 
Sbjct: 336 GKLAKQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVLFDALQA 395

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+K DVLI DTAGRL N + LM  + K++RV+K+ D  APH V+  LDA+TGQNA+ Q
Sbjct: 396 AKARKADVLIADTAGRLQNKAHLMDELKKVVRVMKKQDESAPHEVMLTLDASTGQNAISQ 455

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  F AKDF  
Sbjct: 456 AQLFQEAVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDFIE 515

Query: 309 VIT 311
            + 
Sbjct: 516 ALF 518


>gi|225075354|ref|ZP_03718553.1| hypothetical protein NEIFLAOT_00359 [Neisseria flavescens
           NRL30031/H210]
 gi|224953314|gb|EEG34523.1| hypothetical protein NEIFLAOT_00359 [Neisseria flavescens
           NRL30031/H210]
          Length = 456

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +    + +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTSRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNQALVELMGKENKTLDLSVA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLIVDTAGRLAIDEEMMNEIKVLHAAVN------PIETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGIVLTKMDGDSRGGAALSVRHVTSKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|261247869|emb|CBG25698.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
          Length = 453

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|219871638|ref|YP_002476013.1| signal recognition particle GTPase [Haemophilus parasuis SH0165]
 gi|219691842|gb|ACL33065.1| signal recognition particle GTPase [Haemophilus parasuis SH0165]
          Length = 460

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLKNITGKGRLTEDNIKDTLREVRIALLEADVALPVVREFINKVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQAELEKAMGEANEGLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAALKHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|319639652|ref|ZP_07994399.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria mucosa C102]
 gi|317399223|gb|EFV79897.1| signal recognition particle signal sequence binding protein Ffh
           [Neisseria mucosa C102]
          Length = 456

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +  + + +I     L +D ++E L +    L+ +D+ + V ++ V  +  +   
Sbjct: 2   LDNLTNRFSKVLKNIRGQSTLTEDNIKEALREVRLALLEADVALPVVKEFVNTVKEQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   S  P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEVVGSLTPDQAFIGVVNQALVELMGKENKTLDLSVS-PPAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|241759064|ref|ZP_04757175.1| signal recognition particle protein [Neisseria flavescens SK114]
 gi|241320666|gb|EER56919.1| signal recognition particle protein [Neisseria flavescens SK114]
          Length = 456

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +  + + +I     L +D ++E L +    L+ +D+ + V ++ V  +  +   
Sbjct: 2   LDNLTNRFSKVLKNIRGQSTLTEDNIKEALREVRLALLEADVALPVVKEFVNTVKEQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   S  P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEVVGSLTPDQAFIGVVNQALVELMGKENKTLDLSVS-PPAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|94676923|ref|YP_588534.1| signal recognition particle-docking protein FtsY [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94220073|gb|ABF14232.1| signal recognition particle-docking protein FtsY [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 354

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 185/303 (61%), Gaps = 2/303 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            W+ KL +   +TS     G+  + SS ++D+ + +++E  L+ +D+G    +KI++ L+
Sbjct: 53  GWLSKLKRSLVNTSHHFSSGLMRLFSSTKIDNHLFDQIETQLLMADVGFETTKKILDSLI 112

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           T      +     LY  +   +  +L  ++KP   + + +P +IL+VGVNG GKTT IGK
Sbjct: 113 TYVDHNKIKNTDALYSKLRADMTAILSLVNKPLVIE-NKKPFIILMVGVNGAGKTTTIGK 171

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +       VMLAAGDTFR+AA++QL+ W +  +   V    G+D+A++ +++ + A+
Sbjct: 172 IAHQYQVEKKSVMLAAGDTFRAAAVEQLQAWGELNNIPVVAQHTGADSASVIFDSIQSAK 231

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DVLI DT+GRL NN  LM  + K++RV+K++D  APH V+  +DA TGQNA++Q  
Sbjct: 232 ARGIDVLIADTSGRLQNNVSLMEELKKIVRVMKKIDIEAPHEVMLTIDAGTGQNAVQQAL 291

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+     TG+ +TK+DGTA+GG +  I    KIP+ ++ +GE I+DL  F +  F   I
Sbjct: 292 LFNKTIKITGITLTKLDGTAKGGVIFAIADQFKIPIRYISIGERISDLRAFNSNIFVEAI 351

Query: 311 TGC 313
              
Sbjct: 352 FSL 354


>gi|163733314|ref|ZP_02140757.1| signal recognition particle-docking protein FtsY [Roseobacter
           litoralis Och 149]
 gi|161393102|gb|EDQ17428.1| signal recognition particle-docking protein FtsY [Roseobacter
           litoralis Och 149]
          Length = 485

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 127/279 (45%), Positives = 191/279 (68%), Gaps = 1/279 (0%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           I+  R LDD + E+LE+LLI +D+GV  A ++V  +   R  K +SVQ +   ++  I +
Sbjct: 205 IVVRRTLDDDMLEQLEELLIAADMGVDTALRVVANMAEGRVGKKLSVQEIKELLASEIAQ 264

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           ++ P++KP    +   P V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA
Sbjct: 265 IMEPVAKPLPL-YPRTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKKVVIAAGDTFRAAA 323

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           ++QL++W DR     + +  GSD A+LA++A  +AQ    D+L+IDTAGRL N + LM  
Sbjct: 324 VEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMVKAQQDGADLLLIDTAGRLQNRTDLMEE 383

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K++RV+++ D  APH+ L VLDATTGQNAL QV++F  ++  +GL+MTK+DGTA+GG 
Sbjct: 384 LAKIVRVIRKKDETAPHNTLLVLDATTGQNALNQVKVFSDISDVSGLVMTKLDGTAKGGV 443

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           L+ +     +P++ +GVGE I+DL+ F  +DF+  + G 
Sbjct: 444 LVALADKFGLPIHAIGVGEQIDDLDAFDPEDFADALMGL 482


>gi|16761530|ref|NP_457147.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765992|ref|NP_461607.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143001|ref|NP_806343.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62181248|ref|YP_217665.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161615610|ref|YP_001589575.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553522|ref|ZP_02347271.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167992457|ref|ZP_02573555.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234200|ref|ZP_02659258.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168239447|ref|ZP_02664505.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244700|ref|ZP_02669632.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262150|ref|ZP_02684123.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168464150|ref|ZP_02698067.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823045|ref|ZP_02835045.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443897|ref|YP_002041940.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194447619|ref|YP_002046682.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470549|ref|ZP_03076533.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736625|ref|YP_002115688.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197247718|ref|YP_002147614.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263594|ref|ZP_03163668.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198243111|ref|YP_002216687.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200388229|ref|ZP_03214841.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929456|ref|ZP_03220530.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207858025|ref|YP_002244676.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213161442|ref|ZP_03347152.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213424862|ref|ZP_03357612.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213622617|ref|ZP_03375400.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213647495|ref|ZP_03377548.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289824175|ref|ZP_06543770.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25294415|pir||AI0833 signal recognition particle protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421223|gb|AAL21566.1| 4.5S-RNP protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16503831|emb|CAD05856.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138634|gb|AAO70203.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62128881|gb|AAX66584.1| 45S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161364974|gb|ABX68742.1| hypothetical protein SPAB_03391 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402560|gb|ACF62782.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194405923|gb|ACF66142.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456913|gb|EDX45752.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712127|gb|ACF91348.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633364|gb|EDX51778.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197211421|gb|ACH48818.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241849|gb|EDY24469.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197287864|gb|EDY27252.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937627|gb|ACH74960.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605327|gb|EDZ03872.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321175|gb|EDZ06375.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205322062|gb|EDZ09901.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329303|gb|EDZ16067.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331826|gb|EDZ18590.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336482|gb|EDZ23246.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340654|gb|EDZ27418.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349192|gb|EDZ35823.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709828|emb|CAR34180.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|267994820|gb|ACY89705.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159237|emb|CBW18752.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913700|dbj|BAJ37674.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087155|emb|CBY96922.1| Signal recognition 54 kDa protein SRP54 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223469|gb|EFX48534.1| Signal recognition particle, subunit Ffh SRP54 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614475|gb|EFY11406.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621460|gb|EFY18313.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624321|gb|EFY21154.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629380|gb|EFY26158.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633620|gb|EFY30362.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638337|gb|EFY35035.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639775|gb|EFY36458.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647363|gb|EFY43859.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650467|gb|EFY46877.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656040|gb|EFY52340.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661434|gb|EFY57659.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662634|gb|EFY58842.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667007|gb|EFY63182.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671376|gb|EFY67499.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677617|gb|EFY73680.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681557|gb|EFY77587.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683957|gb|EFY79967.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715734|gb|EFZ07305.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323131021|gb|ADX18451.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323195526|gb|EFZ80704.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197899|gb|EFZ83022.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203077|gb|EFZ88109.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205318|gb|EFZ90293.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210532|gb|EFZ95416.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323218187|gb|EGA02899.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221547|gb|EGA05960.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223767|gb|EGA08072.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230950|gb|EGA15068.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234698|gb|EGA18784.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238737|gb|EGA22787.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241437|gb|EGA25468.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246866|gb|EGA30833.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253265|gb|EGA37095.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257061|gb|EGA40770.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260466|gb|EGA44077.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264477|gb|EGA47983.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269612|gb|EGA53065.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624443|gb|EGE30788.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332989601|gb|AEF08584.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 453

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|255020683|ref|ZP_05292745.1| Signal recognition particle receptor protein FtsY (alpha subunit)
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969919|gb|EET27419.1| Signal recognition particle receptor protein FtsY (alpha subunit)
           [Acidithiobacillus caldus ATCC 51756]
          Length = 403

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 185/312 (59%), Gaps = 3/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
           S     +       +L +G   +  ++   +  + +  + +DD + E+LE +L+++D+GV
Sbjct: 88  SEADAEAPRRGLFGRLREGLRRSREQISASVEQLVLGKKVIDDELLEDLEAILLQADMGV 147

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           A  + I++ +  +    ++     L   + + +  +L P ++P+      +  V+++VG+
Sbjct: 148 AATRDIMDRVTQRVRRNELKDPAALRAAIRQALLDILQPRAQPWT-PAKGQTQVLMMVGI 206

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+ +    G  ++L AGDTFR+AA++QL  WA+R     +    G+D+A
Sbjct: 207 NGAGKTTTIGKLAARWKAEGYSILLGAGDTFRAAAVEQLTGWAERVQVPVIAQGAGADSA 266

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+A+  A+A+ +D++I DTAGRLH    LM  + K+ RVL + DP APH +  VLDA
Sbjct: 267 SVLYDAYAAARARGIDLVIADTAGRLHTQGHLMEELKKVKRVLAKQDPGAPHQIWLVLDA 326

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNAL+QV  FH   G TG+ +TK+DGTA+GG +  +     +P+ F+GVGEG+ DL 
Sbjct: 327 GTGQNALQQVRQFHEAVGLTGICITKLDGTAKGGVVAAVAKALPLPIRFIGVGEGVEDLR 386

Query: 300 PFVAKDFSAVIT 311
           PF A+ F   + 
Sbjct: 387 PFSAEAFVDALV 398


>gi|110806722|ref|YP_690242.1| signal recognition particle protein [Shigella flexneri 5 str. 8401]
 gi|110616270|gb|ABF04937.1| Signal recognition particle protein [Shigella flexneri 5 str. 8401]
          Length = 453

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
              + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GNFLHEKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|259909410|ref|YP_002649766.1| signal recognition particle protein [Erwinia pyrifoliae Ep1/96]
 gi|224965032|emb|CAX56563.1| Signal recognition particle protein (Fifty-four homolog) [Erwinia
           pyrifoliae Ep1/96]
 gi|283479488|emb|CAY75404.1| Signal recognition 54 kDa protein (SRP54) [Erwinia pyrifoliae DSM
           12163]
          Length = 453

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFIGRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   +   +   +   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVNKSLTPGQEFVKIVKNELVAAMGEENNTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++      +   A +QA+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFCPSDLSQRPVDIVKNALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A     
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ F+GVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPDRIASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|239826589|ref|YP_002949213.1| signal recognition particle protein [Geobacillus sp. WCH70]
 gi|239806882|gb|ACS23947.1| signal recognition particle protein [Geobacillus sp. WCH70]
          Length = 446

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLSERLQNVMNKIRGKGKVTEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V E + +++           S  P VI++VG+ G GKTT  GK
Sbjct: 62  GQEVLKSLTPGQQVIKVVKEELTELMGGEQSKIAV-ASRPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +LAA D +R AAI QL+    + +              +A +A ++A
Sbjct: 121 LANLLRKRYNRKPLLAAADIYRPAAIKQLETLGKQLNMPVFSLGDQVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D ++IDTAGRLH +  LM  + +M  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEEHYDYVLIDTAGRLHIDETLMDELKQMKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+I+TK+DG  RGG  + I      P+ F+G+GE ++ LEPF  +  ++ 
Sbjct: 235 QSFHEQLGITGVILTKLDGDTRGGAALSIRAVTNTPIKFVGMGEKLDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|94309226|ref|YP_582436.1| signal recognition particle-docking protein FtsY [Cupriavidus
           metallidurans CH34]
 gi|93353078|gb|ABF07167.1| probable cell division protein; signal recognition particle
           receptor FtsY [Cupriavidus metallidurans CH34]
          Length = 340

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 176/312 (56%), Gaps = 7/312 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
              + A     W+ +L  G + TS  +      +    ++D+ + EELE  L+ +D GV 
Sbjct: 35  PPAQTAEAKRGWMSRLRAGLSKTSRNIGV----LFVGVKVDEALFEELETALLMADAGVE 90

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             + ++ EL  +     +     +   + +L+ ++L PL K         P V+++ GVN
Sbjct: 91  ATEYLLGELRRRIKNDRIETAEGVKAALKDLLTQLLKPLEKTMELGREQ-PLVMMIAGVN 149

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL K        V+LAAGDTFR+AA +QL IW +R +   V  E   D AA
Sbjct: 150 GAGKTTSIGKLCKHFQSYHQSVLLAAGDTFRAAAREQLTIWGERNNVTVVAQE-SGDPAA 208

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A   A+A+K+D+++ DTAGRL     LM  + K+ RV+ +  P APH VL V+DA 
Sbjct: 209 VIFDAVNAARARKIDIVMADTAGRLPTQLHLMEELKKVKRVIGKSMPTAPHEVLLVIDAN 268

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q   F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+P
Sbjct: 269 TGQNALAQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQP 328

Query: 301 FVAKDFSAVITG 312
           F A +F+  + G
Sbjct: 329 FKADEFAEALLG 340


>gi|53804558|ref|YP_113800.1| signal recognition particle protein [Methylococcus capsulatus str.
           Bath]
 gi|53758319|gb|AAU92610.1| signal recognition particle protein [Methylococcus capsulatus str.
           Bath]
          Length = 452

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    RL +        E+   L+ +D+ + V +  +E++  +   
Sbjct: 2   FDNLTDRLSDSLRKLRGQGRLTEANVQDALREVRQALLEADVALPVVKDFIEQVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V+E +  ++   ++  N   +  P VIL+ G+ G GKTT + KL
Sbjct: 62  QEVQKSLTPGQAMIKIVNEELVTIMGKANEKLNL-ATQPPAVILMAGLQGAGKTTTVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K + +A+ D +R AAI QL+  A    A+F  S+       +A  A +  +
Sbjct: 121 ARWIKENLRKSVLVASADVYRPAAIQQLETLASEVKAEFFPSDASERPVDIARRAVEHGR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DV+IIDTAGRLH +  +M  I  +   +K      P   L V+D+ TGQ+A    +
Sbjct: 181 KRYMDVVIIDTAGRLHIDEDMMDEIKAVHAAIK------PIETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK DG ARGG  + I      P+ F+GVGE    LE F     ++ I
Sbjct: 235 AFHDALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGEKTAALEVFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|126665078|ref|ZP_01736061.1| signal recognition particle protein [Marinobacter sp. ELB17]
 gi|126630448|gb|EBA01063.1| signal recognition particle protein [Marinobacter sp. ELB17]
          Length = 461

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  I    RL +        E+   L+ +D+ + V +  VE +  +   
Sbjct: 2   FENLQDRLSGSLRKITGQARLTEDNIKDTLREVRMALLEADVALPVVKDFVESVRQRAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + + +++   +   N   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVQRSLTPGQVFVKVVQQELERVMGEANTGLNLSVT-PPAVIMMAGLQGAGKTTTVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +       VM+ + D +R AAI QL+  A+    +F  S    D  A+A  A   A+
Sbjct: 121 ARFLKERQKKSVMVVSADIYRPAAIKQLETLANEVGVEFFPSSADQDPVAIAEGAISAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRL  + ++M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 KKHIDVVILDTAGRLAIDEMMMGEISRLHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKTDGDARGGAALSVRHITGKPIKFLGVGEKSDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|317133004|ref|YP_004092318.1| signal recognition particle protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315470983|gb|ADU27587.1| signal recognition particle protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 443

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S KL      + S  +L +        E+   L+ +D+   +A++ V ++  +  
Sbjct: 2   AFEGLSEKLSAAFKRLRSKGKLTEADVRQAMREVRLALLEADVNYKIAKQFVNDVTERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              V       Q+V+  V+E +  ++        +  S  P VIL+ G+ G GKTT   K
Sbjct: 62  GSAVLESLTPAQQVIKIVNEELTALMGGEQSRIRY-ASKPPTVILLCGLQGSGKTTHAAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  M   G + +LAA D +R AAI QL++  ++            D   +A  A   A+
Sbjct: 121 LALSMKKQGKRPLLAACDVYRPAAIKQLQVVGEKAGVPVFEQG-QGDPVKIAKAALHHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  LM  + ++   ++      P  +L V+DA TGQ+A+    
Sbjct: 180 DHGSDVLILDTAGRLHVDEALMDELKRIKAAVE------PDEILLVVDAMTGQDAVNVAS 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V G  G+I+TK+DG  RGG  + +      P+ F G GE ++DLEPF  +  ++ I
Sbjct: 234 SFNEVLGIDGVILTKLDGDTRGGAALSVRAVTGKPIKFAGTGEKLDDLEPFHPERMASRI 293

Query: 311 TGCLDY 316
            G  D 
Sbjct: 294 LGMGDM 299


>gi|161831407|ref|YP_001597722.1| signal recognition particle-docking protein FtsY [Coxiella burnetii
           RSA 331]
 gi|161763274|gb|ABX78916.1| signal recognition particle-docking protein FtsY [Coxiella burnetii
           RSA 331]
          Length = 324

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 190/312 (60%), Gaps = 4/312 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
            N + +     W+ +L +    T  +L +G++++ +  + +D  + EELE +L+ +DIG+
Sbjct: 13  KNNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGI 72

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              Q I+  L  +   K +S  + L D  +  +  +L P  K      S  P VIL VGV
Sbjct: 73  EATQSILNNLSQQVARKSLSDPKALIDALKIELLNILEPCQKHLEISAS--PFVILTVGV 130

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT I KL+        +VMLAAGDTFR+AAI+QL+ W  R +A  +  + G+D+A
Sbjct: 131 NGVGKTTTIAKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVIAQQPGADSA 190

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+A + A A+  D+LI DTAGRLH  S LM  + K+ RV+K+++P APH  L  LDA
Sbjct: 191 SVIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLALDA 250

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q E FH   G TG+ +TK+DGTA+GG +  I    ++P+ F+G+GE I DL+
Sbjct: 251 GTGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLK 310

Query: 300 PFVAKDFSAVIT 311
           PF AK+F A + 
Sbjct: 311 PFNAKEFIAALF 322


>gi|260663571|ref|ZP_05864461.1| signal recognition particle receptor [Lactobacillus fermentum
           28-3-CHN]
 gi|260552112|gb|EEX25165.1| signal recognition particle receptor [Lactobacillus fermentum
           28-3-CHN]
          Length = 509

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 115/298 (38%), Positives = 172/298 (57%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +K  +G   +       +   +++ R +D+   + LED+LI SD+G  +A K+ + L  +
Sbjct: 201 KKYDQGLEKSRNGFGARLNRFLANFRHVDEDFFDNLEDMLIESDVGYEMAMKLSDSLREE 260

Query: 74  RYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              ++   ++ + +V       ++       +         P VI+ VGVNG GKTT IG
Sbjct: 261 VRLQNAKNKQDVSNVIIEKMVDLYDEAGAGEQTTLTMADQGPTVIMFVGVNGAGKTTTIG 320

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++ +    G +V+LAA DTFR+ A +QL++WA R   D V     SD AA+ ++A  +A
Sbjct: 321 KMAARFKGQGKRVLLAAADTFRAGATEQLEVWAQRDGVDIVTGPENSDPAAVVFDAVTKA 380

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVL +DTAGRL N   LM  + KM R+L R  P APH VL VLDATTGQNAL Q 
Sbjct: 381 KKDNYDVLFVDTAGRLQNKVNLMNELAKMKRILTREIPDAPHEVLLVLDATTGQNALTQA 440

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           ++F      TG+++TK+DGTARGG ++ I     +PV F+G+GE ++DLE F A+DF 
Sbjct: 441 KLFKETTDVTGIVLTKLDGTARGGIVLAIRNELHLPVKFVGLGEKVSDLEEFNAQDFV 498


>gi|312143704|ref|YP_003995150.1| signal recognition particle protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904355|gb|ADQ14796.1| signal recognition particle protein [Halanaerobium sp.
           'sapolanicus']
          Length = 445

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F++ + KL++    +    +L +       +E++  L+ +D+   V ++ V ++  +   
Sbjct: 3   FSNLAEKLQDTFDKLRGKGKLSESDVKSALKEVKMALLEADVNYKVVKRFVNKIEERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K+V       Q+V+  V+E +  ++    +  N      P +I++VG+ G GKTT  GKL
Sbjct: 63  KEVMDSLTPAQQVIKIVNEEMQNLMGGSQEEINIS-PDPPTIIMMVGLQGSGKTTSAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +S+ G   +L A D +R AAI QL++  +R           SD   +A  +   A  
Sbjct: 122 ARMLSNKGKNPLLVAADVYRPAAIRQLQVLGERLDLPVFSMGEDSDPVDIAKGSINFAST 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DTAGRLH +  +M  +  +   +       P  +L V+DA TGQ+A+   + 
Sbjct: 182 HNCDTIILDTAGRLHIDQEMMEELEGIKGAVD------PDEILLVVDAMTGQDAVNVAQN 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G+++TKMDG ARGG  + I      P+ F G GE + DLEPF     ++ I 
Sbjct: 236 FDKRLDIDGILLTKMDGDARGGAALSIKEITGKPIKFAGTGEKLADLEPFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|332185721|ref|ZP_08387468.1| signal recognition particle-docking protein FtsY [Sphingomonas sp.
           S17]
 gi|332014079|gb|EGI56137.1| signal recognition particle-docking protein FtsY [Sphingomonas sp.
           S17]
          Length = 311

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 147/306 (48%), Positives = 190/306 (62%), Gaps = 1/306 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           S S SW  KL  GF  TS +L   +  +  + RLD+   +E+E+ LI SD+G   A  I 
Sbjct: 2   SSSPSWHEKLLGGFRRTSDRLVGNLAGL-GTARLDEDTLDEIEEALIASDLGPETAGHIR 60

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             L    + +++    +   V+E + K L  ++ P   D   RP VILV+GVNG GKTT 
Sbjct: 61  TRLSEGSFERNMEDLGIRLVVAEEVEKALAKVATPLEIDAFPRPQVILVIGVNGSGKTTT 120

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL+    +    VMLAAGDTFR+AAI QL  WA+R     V  + G DAA + YEA K
Sbjct: 121 IAKLAHLFMEQDYGVMLAAGDTFRAAAIGQLATWAERVGVPIVSGKEGGDAAGIVYEAVK 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA A  VDVLI+DTAGRL N   LM  + K+ RVL RL+P APH +L VLDATTGQNAL 
Sbjct: 181 QATATGVDVLIVDTAGRLQNKRELMDELSKIRRVLGRLNPEAPHDILLVLDATTGQNALN 240

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+E+F  VAG TGL+MTK+DGTARGG L+     + +P++ +GVGEG+ DL PF A + S
Sbjct: 241 QIEVFKDVAGVTGLVMTKLDGTARGGVLVAAAEKYGLPIHAIGVGEGMTDLRPFDANEVS 300

Query: 308 AVITGC 313
            +I G 
Sbjct: 301 RIIAGI 306


>gi|298370390|ref|ZP_06981706.1| signal recognition particle protein [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281850|gb|EFI23339.1| signal recognition particle protein [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 456

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +    + +I    +L +D ++E L +    L+ +D+ ++V ++ V  +  K   
Sbjct: 2   LDNLTNRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVALSVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVAGSLTPDQAFIGVVNQALIELMGKENKTLDLSVA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S        +A  A   A+
Sbjct: 121 ARLLKNEQKKKVLVVSADVYRPAAIEQLRLLAEQVGIDFFPSNSNQKPVEIATAAIDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVVDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TKMDG +RGG  + +      P+ F+GVGE I  LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKMDGDSRGGAALSVRQITGKPIKFIGVGEKITGLEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|227329617|ref|ZP_03833641.1| signal recognition particle protein [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 453

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELVSAMGEINAELNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++     A+   A + A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVQEKPLAIVQRALQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF  +  ++ I
Sbjct: 235 AFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|126733156|ref|ZP_01748903.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           CCS2]
 gi|126716022|gb|EBA12886.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           CCS2]
          Length = 315

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 128/296 (43%), Positives = 196/296 (66%), Gaps = 3/296 (1%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
            KG               +  R LDD + E+LE+LLI +D+GV  A ++   +   R  +
Sbjct: 21  KKGL--LGRFFGGAEAKTVVKRTLDDDMLEQLEELLITADMGVDTALRVTANMAEGRLGR 78

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
            +SVQ +   +++ + +++ P+++P    ++  P V+LVVGVNG GKTT IGKL+ +   
Sbjct: 79  KLSVQEIKELMAQEVSRIMEPVARPMPL-YTKTPQVVLVVGVNGSGKTTTIGKLASQFRA 137

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           AG KV++AAGDTFR+AA++QL++W +R     + +  GSD A+LA++A  QAQA   D+L
Sbjct: 138 AGKKVVIAAGDTFRAAAVEQLQVWGERADVPVLTAPEGSDPASLAFDAMTQAQADGADLL 197

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDTAGRL N + LM  + K++RV+++ DP APH+ L VLDATTGQNA++QV++F  +A 
Sbjct: 198 MIDTAGRLQNRADLMEELAKIVRVIRKKDPDAPHNTLLVLDATTGQNAVQQVKVFQELAD 257

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +GL+MTK+DGTA+GG L+ +     +P++ +GVGE I+DL PF   DF+A + G 
Sbjct: 258 VSGLVMTKLDGTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPDDFAAALVGL 313


>gi|283835680|ref|ZP_06355421.1| signal recognition particle protein [Citrobacter youngae ATCC
           29220]
 gi|291068895|gb|EFE07004.1| signal recognition particle protein [Citrobacter youngae ATCC
           29220]
          Length = 453

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|167622228|ref|YP_001672522.1| signal recognition particle-docking protein FtsY [Shewanella
           halifaxensis HAW-EB4]
 gi|167352250|gb|ABZ74863.1| signal recognition particle-docking protein FtsY [Shewanella
           halifaxensis HAW-EB4]
          Length = 597

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 191/303 (63%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +L +G   TS  +  G   + S +++DD + EELE+ L+ +D+GV    ++++ 
Sbjct: 285 KEGLFARLKRGLKRTSESIGSGFIGLFSGKKIDDDLFEELEEQLLIADVGVETTTRLIKN 344

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   K +     LY++  E + K L P+S P   + +  P VIL+VGVNGVGKTT I
Sbjct: 345 LTEQASRKQLKDGEALYELLREEMQKTLEPVSVPLVPENADGPFVILMVGVNGVGKTTTI 404

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + 
Sbjct: 405 GKLAKQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVLFDALQA 464

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+KVDVLI DTAGRL N + LM  + K++RV+K+ D  APH V+  LDA+TGQNA+ Q
Sbjct: 465 ARARKVDVLIADTAGRLQNKAHLMDELKKVVRVMKKQDETAPHEVMLTLDASTGQNAISQ 524

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  F AKDF  
Sbjct: 525 AQLFQEAVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDFIE 584

Query: 309 VIT 311
            + 
Sbjct: 585 ALF 587


>gi|152998323|ref|YP_001343158.1| signal recognition particle-docking protein FtsY [Marinomonas sp.
           MWYL1]
 gi|150839247|gb|ABR73223.1| signal recognition particle-docking protein FtsY [Marinomonas sp.
           MWYL1]
          Length = 413

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 194/312 (62%), Gaps = 2/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S  +    +LSW ++   G + T   L  G++ +I   +++DD + EELE  L+ +D+G+
Sbjct: 99  SESEPVQPALSWSQRFKLGLSRTRSGLGNGLSSVIGGHKKVDDNLLEELETQLLMADVGI 158

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              Q ++  L  K   K++     L   +   ++ +L    +         P VIL+VGV
Sbjct: 159 DATQTLISALTDKLNRKELKDSATLLSHLKADMNGILSQSQQMLEPVSKDGPFVILMVGV 218

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+KK    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A
Sbjct: 219 NGVGKTTTIGKLAKKYQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSA 278

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+A + A+AK VD++I DTAGRL N + LM  + K++RV+K+LD +APH V+ VLDA
Sbjct: 279 SVIYDAIESAKAKGVDIVIADTAGRLQNKANLMNELSKVVRVMKKLDENAPHEVMLVLDA 338

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q ++F    G +G+ +TK+DGTA+GG +  I     IP+ ++GVGE  +DL 
Sbjct: 339 GTGQNAISQAKLFSEAVGVSGITLTKLDGTAKGGIIFAIAKQFGIPIRYIGVGEQADDLR 398

Query: 300 PFVAKDFSAVIT 311
           PFVA++F   + 
Sbjct: 399 PFVAQEFVDALF 410


>gi|332288625|ref|YP_004419477.1| signal recognition particle protein [Gallibacterium anatis UMN179]
 gi|330431521|gb|AEC16580.1| signal recognition particle protein [Gallibacterium anatis UMN179]
          Length = 458

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSRTLRNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFINQVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   + K +   ++  N   +  P VIL+ G+ G GKTT + KL
Sbjct: 62  VEVNKSLTPGQEFIKIVQAELEKAMGEANETLNL-ATQPPAVILMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KVM+ + D +R AAI QL+  A   +A F  S+       +   A  +A+
Sbjct: 121 AKFLQQRHKKKVMVVSADVYRPAAIKQLETLAQSVNATFYPSDASQKPEEIVKAALSEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++ +VL       P   L  +DA TGQ+A    +
Sbjct: 181 LKFFDVLIVDTAGRLHVDEEMMNEIKQIHQVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLG+GE  + LEPF  +  ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGMGEKTDALEPFYPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|295399784|ref|ZP_06809765.1| signal recognition particle protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111704|ref|YP_003990020.1| signal recognition particle protein [Geobacillus sp. Y4.1MC1]
 gi|294978187|gb|EFG53784.1| signal recognition particle protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216805|gb|ADP75409.1| signal recognition particle protein [Geobacillus sp. Y4.1MC1]
          Length = 446

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  ++ I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLSERLQSVMSKIRGKGKVTEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V E + +++           S  P VI++VG+ G GKTT  GK
Sbjct: 62  GQEVLKSLTPGQQVIKVVKEELTELMGGEQSKIAV-ASRPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +        ML A D +R AAI QL+    + +              +A +A ++A
Sbjct: 121 LANLLRKRYNRNPMLVAADIYRPAAIKQLETLGKQLNMPVFSLGDQVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D ++IDTAGRLH +  LM  + +M  + K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEEHYDYVLIDTAGRLHIDETLMDELKQMKEIAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+I+TK+DG  RGG  + I      P+ F+G+GE ++ LEPF  +  ++ 
Sbjct: 235 QSFHEQLGITGVILTKLDGDTRGGAALSIRAVTNTPIKFVGMGEKLDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|227115236|ref|ZP_03828892.1| signal recognition particle protein [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 453

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELVSAMGEINAELNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +      KV++ + D +R AAI QL+  A++   DF  S++     A+   A + A+
Sbjct: 121 GKFLREKQKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVQEKPLAIVERALQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF  +  ++ I
Sbjct: 235 AFNEALPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|225568167|ref|ZP_03777192.1| hypothetical protein CLOHYLEM_04241 [Clostridium hylemonae DSM
           15053]
 gi|225162886|gb|EEG75505.1| hypothetical protein CLOHYLEM_04241 [Clostridium hylemonae DSM
           15053]
          Length = 448

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 148/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++ S  RL +       +E++  L+ +D+   V +  ++ +  +  
Sbjct: 2   AFDSLTEKLQNIFKNLRSKGRLTEDDVKEALKEIKRALLAADVNFKVVKGFIKNVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +            VI++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEELVKLMGSETTEIKLQPGSAVTVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G K +LAA D +R AAI QL++  ++   D          + +A  A   AQ
Sbjct: 122 LAGKYKLKGKKPLLAACDVYRPAAIKQLQVNGEKQGVDVFSMGDSHKPSDIAKAALLHAQ 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+    
Sbjct: 182 KNGNNIVILDTAGRLHIDEDMMAELQEIKEAVD------VHQTILVIDAMTGQDAVNVAS 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + +      P+ + G+GE ++DLE F     ++ I
Sbjct: 236 DFNEKIGIDGVIITKLDGDTRGGAALSVKAVTGKPILYAGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|261210129|ref|ZP_05924427.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. RC341]
 gi|260840894|gb|EEX67436.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. RC341]
          Length = 462

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V  +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V + +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A+    DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSSPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|89895351|ref|YP_518838.1| hypothetical protein DSY2605 [Desulfitobacterium hafniense Y51]
 gi|89334799|dbj|BAE84394.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 322

 Score =  294 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 138/321 (42%), Positives = 203/321 (63%), Gaps = 2/321 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIG 59
           MS  K   +   +  KL  G   T  +    + +I+   R++D+ + EELE++LIRSD+G
Sbjct: 1   MSMYKEEVQLAGFFTKLKNGLTKTRDQFVTKVEEILTGRRKIDEELYEELEEVLIRSDVG 60

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           V  +  +VE L  +   + +     L  V + +   L+   +  N+   H P + LVVGV
Sbjct: 61  VNTSFGLVEGLRKEVKKRKLQEAEELKIVLQELIAELLGEEESMNF-AEHGPSIFLVVGV 119

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+      G KV+LAAGDTFR+AAIDQL++W  R   + +  + G+D A
Sbjct: 120 NGVGKTTTIGKLAHYFQGEGKKVILAAGDTFRAAAIDQLEVWGQRAGVEVIKQKEGADPA 179

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+AY+A + A+++  D++I+DTAGRLHN   LM  + K+ RV++R  P APH VL VLDA
Sbjct: 180 AVAYDALQAAKSRGADLVIMDTAGRLHNKVNLMEELRKVKRVIEREIPGAPHEVLLVLDA 239

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL+Q ++F  VAG TG+++TK+DGTA+GG ++ I     IPV ++GVGEG+ DL 
Sbjct: 240 TTGQNALQQAKLFQEVAGVTGIVLTKLDGTAKGGVVLGIQGEINIPVKWIGVGEGMEDLR 299

Query: 300 PFVAKDFSAVITGCLDYGEEK 320
           PF+ +DF++ +       EE+
Sbjct: 300 PFIPQDFASALFDQTQDDEEE 320


>gi|114799634|ref|YP_762197.1| signal recognition particle-docking protein FtsY [Hyphomonas
           neptunium ATCC 15444]
 gi|114739808|gb|ABI77933.1| signal recognition particle-docking protein FtsY [Hyphomonas
           neptunium ATCC 15444]
          Length = 414

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 135/302 (44%), Positives = 204/302 (67%), Gaps = 1/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
               +L +G A ++ KL EG+  +   R+LDD   EEL+DLLI SD+G  VA ++ + + 
Sbjct: 111 GLFGRLGEGLARSTAKLTEGLAAL-GRRKLDDATLEELQDLLITSDMGTRVAMRVTKGIA 169

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             R+ K++S + +   ++E I ++L P  +  ++    RP ++L VGVNG GKTT IGK+
Sbjct: 170 KGRFDKEISGEEIRLALAEEIEEILKPREQVVDFSDGPRPRIVLFVGVNGSGKTTTIGKI 229

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+ + G K +L AGDTFR+AA++QLK+W +R     +    G+DAA L Y A ++A+A
Sbjct: 230 ASKLQEQGAKALLVAGDTFRAAAVEQLKVWGERAGIPVMAGAHGADAAGLVYGAVERAKA 289

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D++++DTAGRL N + LM+ +GK++RV+K++DP APH V+ VLDAT GQNAL QVE 
Sbjct: 290 EDLDLVLVDTAGRLQNKAELMSELGKIVRVMKKIDPDAPHDVILVLDATVGQNALSQVEA 349

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   AG TGL+MTK+DGTA+GG L+ I   H +P++F+G+GE   DL PF A+ F+  + 
Sbjct: 350 FRHTAGVTGLVMTKLDGTAKGGVLVAIAEAHDLPIHFIGIGERAEDLRPFSAEAFAKALV 409

Query: 312 GC 313
           G 
Sbjct: 410 GI 411


>gi|304384767|ref|ZP_07367113.1| signal recognition particle protein [Pediococcus acidilactici DSM
           20284]
 gi|304328961|gb|EFL96181.1| signal recognition particle protein [Pediococcus acidilactici DSM
           20284]
          Length = 487

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 145/310 (46%), Gaps = 17/310 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLT 72
           L+  F   + +L++   ++    ++ +        E+   L+ +D+   V +K V+ +  
Sbjct: 9   LSMAFEGLTERLQKTFNNLRKKGKVTEADLRDTMREIRLALLEADVNFTVVKKFVKTVRE 68

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +    D+       Q+++  V++ + KM+   + P N      P VI++ G+ G GKTT 
Sbjct: 69  QALGSDILEGLNPAQQIVKLVNDELVKMMGTEASPLN-QAPKIPTVIMMAGLQGAGKTTT 127

Query: 128 IGKLSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GKL+ K+ +    + +L A D +R AAIDQL    ++                +     
Sbjct: 128 TGKLALKLKNEKKARPLLIAADVYRPAAIDQLVQVGEQIDVPVYQEGTDVSPVEIVRHGL 187

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA   K D + IDTAGRL  +  LM  +  +       D   P  +L V+DA TGQNA+
Sbjct: 188 EQAAENKNDYVFIDTAGRLQIDEKLMQELADIK------DLAHPDEILLVVDAMTGQNAV 241

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              E F+     TG+I+TK+DG  RGG  + I      P+ F+G GE + DL+ F     
Sbjct: 242 NTAEGFNDKLDVTGVILTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMEDLDVFHPDRM 301

Query: 307 SAVITGCLDY 316
           ++ I G  D 
Sbjct: 302 ASRILGMGDM 311


>gi|261380661|ref|ZP_05985234.1| signal recognition particle protein [Neisseria subflava NJ9703]
 gi|284796646|gb|EFC51993.1| signal recognition particle protein [Neisseria subflava NJ9703]
          Length = 456

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +  + + +I     L +D ++E L +    L+ +D+ + V ++ V  +  +   
Sbjct: 2   LDNLTNRFSKVLKNIRGQSTLTEDNIKEALREVRLALLEADVALPVVKEFVNTVKEQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +K  +   S  P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEVVGSLTPDQAFIGVVNQALIELMGKENKTLDLSVS-PPAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG +RGG  + +      P+ F+GVGE IN LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|205353714|ref|YP_002227515.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273495|emb|CAR38472.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326628820|gb|EGE35163.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 453

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|254476268|ref|ZP_05089654.1| signal recognition particle-docking protein FtsY [Ruegeria sp. R11]
 gi|214030511|gb|EEB71346.1| signal recognition particle-docking protein FtsY [Ruegeria sp. R11]
          Length = 418

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 127/276 (46%), Positives = 190/276 (68%), Gaps = 1/276 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E+LEDLL+ +D+GV  A ++   +   RY K +S + +   ++  + +++ 
Sbjct: 141 RRVLDDEMLEQLEDLLVGADMGVDTALRVTANMAEGRYGKRLSAREIKELLAGEVARIME 200

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P    +  RP V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA++Q
Sbjct: 201 PVARPMPI-YEKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQ 259

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W DR     + +  GSD A+LA++A  +AQ    D+L+IDTAGRL N + LM  + K
Sbjct: 260 LQVWGDRAGVPVLTAPEGSDPASLAFDAMTRAQEDGADLLMIDTAGRLQNRADLMEELAK 319

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV+++ D  APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+DGTA+GG L+ 
Sbjct: 320 IVRVIRKKDETAPHNTLLVLDATTGQNALNQVETFQKLADVSGLVMTKLDGTAKGGVLVA 379

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +     +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 380 LADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 415


>gi|153824163|ref|ZP_01976830.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           B33]
 gi|126518315|gb|EAZ75540.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           B33]
          Length = 303

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 121/296 (40%), Positives = 189/296 (63%), Gaps = 1/296 (0%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L    + T   +  G   +   +++DD + EELE+ L+ +D+G+    KI+  L  +   
Sbjct: 4   LKAQLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASR 63

Query: 77  KDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVGKTT IGKL+K+ 
Sbjct: 64  QQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQF 123

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y+A + A+A+ +D
Sbjct: 124 QAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIYDAIEAAKARGID 183

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q ++F  V
Sbjct: 184 VVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDV 243

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           A  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F   + 
Sbjct: 244 APITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALF 299


>gi|154250433|ref|YP_001411258.1| signal recognition particle-docking protein FtsY [Fervidobacterium
           nodosum Rt17-B1]
 gi|154154369|gb|ABS61601.1| signal recognition particle-docking protein FtsY [Fervidobacterium
           nodosum Rt17-B1]
          Length = 304

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 129/310 (41%), Positives = 190/310 (61%), Gaps = 12/310 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  KL  G   +       I  I+  ++ D   REE+E+LLI +D+GV   + I+E+L
Sbjct: 1   MGFFDKLRDGLKKSRESFFNKIGQILKFKKFDKETREEIEELLILADVGVEATEYIIEKL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                 +++  +     + E++  +L   ++  N   S +P VI +VGVNG GKTT  GK
Sbjct: 61  ------EEMKPEDAFSALKEILVDILKGKNE-LNVP-SEKPFVISLVGVNGSGKTTTCGK 112

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G +V++ A DTFR+AAIDQL++WADR+ A F+    G+DAAA+AY+A   A 
Sbjct: 113 LASMFRGEGKQVVIGACDTFRAAAIDQLRVWADRSGATFIAHMEGADAAAVAYDAVNHAI 172

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +K  DV+++DTAGRLHN   LM  + K+ RV+++L P+APH VL VLDA TGQN L+Q +
Sbjct: 173 SKGKDVVLLDTAGRLHNKKHLMDELQKVNRVIQKLMPNAPHEVLLVLDAVTGQNGLQQAK 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  V   TG+++TK+DGTA+GG  I I     IP+ F+GVGEGI+DL+PF    F   +
Sbjct: 233 IFKEVVNVTGIVLTKLDGTAKGGIAIAIAKELGIPIKFIGVGEGIDDLKPFDPVAFVEAL 292

Query: 311 TGCLDYGEEK 320
                 G+E 
Sbjct: 293 M----AGDEN 298


>gi|157148123|ref|YP_001455442.1| signal recognition particle protein [Citrobacter koseri ATCC
           BAA-895]
 gi|157085328|gb|ABV15006.1| hypothetical protein CKO_03933 [Citrobacter koseri ATCC BAA-895]
          Length = 453

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A +   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVDVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|288942586|ref|YP_003444826.1| signal recognition particle-docking protein FtsY [Allochromatium
           vinosum DSM 180]
 gi|288897958|gb|ADC63794.1| signal recognition particle-docking protein FtsY [Allochromatium
           vinosum DSM 180]
          Length = 422

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 114/258 (44%), Positives = 165/258 (63%), Gaps = 1/258 (0%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+G+  + +++ +L  +   K ++    L   + E +  +L  +  P       +P V+
Sbjct: 165 ADVGIETSTRLIADLTARVKRKKITDPEALLAALKEDLRTILRAVDGPVKQPAPGKPQVV 224

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNG GKTT IGKL+K++ + G  VMLAAGDTFR+AA++QL+ W +R     V    
Sbjct: 225 LMVGVNGAGKTTTIGKLAKRLQEEGNSVMLAAGDTFRAAAVEQLETWGERNGVPVVAQHT 284

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D+A++ ++A + A A+  DVLI DTAGRLH  + LM  + K+ RVLK+LDP APH V+
Sbjct: 285 GADSASVIFDALQAATARGADVLIADTAGRLHTKTNLMDELSKVARVLKKLDPEAPHEVM 344

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DATTGQNAL Q E FH   G TG+ +TK+DGTA+GG L  I    ++P+ F+GVGE 
Sbjct: 345 LVVDATTGQNALNQAEHFHRAVGLTGITLTKLDGTAKGGILFAIAERLRVPIRFIGVGES 404

Query: 295 INDLEPFVAKDFSAVITG 312
           I DL PF   +F   + G
Sbjct: 405 IEDLRPFDPDEFVEALLG 422


>gi|89075050|ref|ZP_01161491.1| putative signal recognition particle protein [Photobacterium sp.
           SKA34]
 gi|89049137|gb|EAR54702.1| putative signal recognition particle protein [Photobacterium sp.
           SKA34]
          Length = 455

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL D        E+   L+ +D+ + V ++ V+ +  +   
Sbjct: 2   FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   S+  +      P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVSKSLTPGQEFIKIVQAELEAVMGEESEGLDLSC-QPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A     DF  S +      +A  A +  +
Sbjct: 121 GKLLKERDSKKVLVVSADVYRPAAIKQLETLAGDVGIDFFPSNVEQKPVEIAKAALEHGR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRLH +  +M  I  + + L       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVVIVDTAGRLHVDEEMMGEIKDVHKTLN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + +      P+ FLG+GE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGIGEKTDALEPFHPNRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|303253167|ref|ZP_07339316.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248810|ref|ZP_07530823.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307262237|ref|ZP_07543886.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|302647849|gb|EFL78056.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854737|gb|EFM86927.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306868000|gb|EFM99827.1| Signal recognition particle protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 463

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  L  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVNKSLTPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++ RVL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  N LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTNALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|300776242|ref|ZP_07086100.1| cell division protein FtsY [Chryseobacterium gleum ATCC 35910]
 gi|300501752|gb|EFK32892.1| cell division protein FtsY [Chryseobacterium gleum ATCC 35910]
          Length = 317

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 129/311 (41%), Positives = 188/311 (60%), Gaps = 13/311 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGV 60
           +SW +          L KG   +S    E +T  ++   ++DD V ++LE++LI SD+G 
Sbjct: 1   MSWFKNIFKKEEKETLDKGLEKSSQGFFEKMTKAVVGKSKVDDEVLDDLEEVLIASDVGA 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLM--PLSKPFNWDFSHRPHVILVV 117
           +   KI+E +  +    K V V  +   + E I  +L+  P +   N D S +P+VI+VV
Sbjct: 61  STTIKIIERIEERVARDKYVGVNELDKILREEISGLLLENPHAGTGNIDTSKKPYVIMVV 120

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +    G KV+L A DTFR+AA+DQL IW++R     V   +GSD
Sbjct: 121 GVNGVGKTTTIGKLAHQFKSEGKKVVLGAADTFRAAAVDQLTIWSERVDVPIVKQGMGSD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A++  + A A+  DV+IIDTAGRLHN   LM  + K+ RV++++ P APH +L VL
Sbjct: 181 PASVAFDTVQSAVAQNADVVIIDTAGRLHNKINLMNELSKIKRVMQKVIPDAPHEILLVL 240

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D +TGQNA  Q + F A      L +TK+DGTA+GG +I I    +IPV ++GVGE + D
Sbjct: 241 DGSTGQNAFEQAKQFTAATEVNALAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEKMQD 300

Query: 298 LEPFVAKDFSA 308
           L+ F   +F  
Sbjct: 301 LQLFNGTEFVD 311


>gi|261342041|ref|ZP_05969899.1| signal recognition particle protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288315697|gb|EFC54635.1| signal recognition particle protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 453

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEENVKETLREVRMALLEADVALPVVRDFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQVLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++      +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVAQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|313206703|ref|YP_004045880.1| signal recognition particle-docking protein ftsy [Riemerella
           anatipestifer DSM 15868]
 gi|312446019|gb|ADQ82374.1| signal recognition particle-docking protein FtsY [Riemerella
           anatipestifer DSM 15868]
 gi|315023770|gb|EFT36772.1| Signal recognition particle receptor protein FtsY (alpha subunit)
           [Riemerella anatipestifer RA-YM]
 gi|325335858|gb|ADZ12132.1| FtsY [Riemerella anatipestifer RA-GD]
          Length = 318

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 125/299 (41%), Positives = 184/299 (61%), Gaps = 4/299 (1%)

Query: 17  LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L +G   +S    E I+  +I   ++DD V ++LE++LI SD+G     KI+E +  +  
Sbjct: 16  LDRGLEKSSQGFFEKISKAVIGKSKVDDEVLDDLEEVLIASDVGAQTTIKIIERIEDRVA 75

Query: 75  YAKDVSVQRVLYDVSELIHKMLM--PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
             K V V  +   + E I  +L+  P +   N D + +P+VI+VVGVNGVGKTT IGKL+
Sbjct: 76  RDKYVGVDELHKLLKEEITALLLENPHADTGNIDEAKKPYVIMVVGVNGVGKTTTIGKLA 135

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +    G KV+L A DTFR+AA+DQL IW++R     V   +GSD A++A++  + A A+
Sbjct: 136 HQFKTQGKKVVLGAADTFRAAAVDQLVIWSERVGVPIVKQNMGSDPASVAFDTVQSAVAQ 195

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV++IDTAGRLHN   LM  + K+ RV++++ P APH VL VLD +TGQNA  Q + F
Sbjct: 196 NADVVLIDTAGRLHNKVNLMNELSKIKRVMQKVIPDAPHEVLLVLDGSTGQNAFEQAKQF 255

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            A      L +TK+DGTA+GG +I I    ++PV ++GVGE + DL+ F   +F   + 
Sbjct: 256 TAATEVNALAVTKLDGTAKGGVVIGISDQFQVPVKYIGVGEKMEDLQLFNGTEFVDSLF 314


>gi|226325149|ref|ZP_03800667.1| hypothetical protein COPCOM_02941 [Coprococcus comes ATCC 27758]
 gi|225206497|gb|EEG88851.1| hypothetical protein COPCOM_02941 [Coprococcus comes ATCC 27758]
          Length = 454

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 151/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++ S  RL +        E++  L+ +D+   V +  V+ +  +  
Sbjct: 2   AFDSLTEKLQNVFKNLRSKGRLTEDDVKAALREVKMALLEADVNFKVVKNFVKSVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V++ +  ++   +    +    +  VI+++G+ G GKTT   K
Sbjct: 62  GQDVMSGLNPGQMVIKIVNDELVNLMGSETTEIKFQPGSQKTVIMMMGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G K +L A D +R AAI QL+I  ++   +          A +A  A + A+
Sbjct: 122 LAGKFKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSMGDNQKPANIAKAALEHAE 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRLH +  +M  + ++   ++       H  + V+DA TGQ+A+   E
Sbjct: 182 KNGNNVIILDTAGRLHIDEEMMEELQEIKNTVE------VHQSILVVDAMTGQDAVNVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 NFNEKIGIDGVIVTKLDGDTRGGAALSIKAVTGCPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|28198783|ref|NP_779097.1| cell division protein [Xylella fastidiosa Temecula1]
 gi|182681482|ref|YP_001829642.1| signal recognition particle-docking protein FtsY [Xylella
           fastidiosa M23]
 gi|28056874|gb|AAO28746.1| cell division protein [Xylella fastidiosa Temecula1]
 gi|182631592|gb|ACB92368.1| signal recognition particle-docking protein FtsY [Xylella
           fastidiosa M23]
 gi|307579937|gb|ADN63906.1| signal recognition particle-docking protein FtsY [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 397

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 184/313 (58%), Gaps = 9/313 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           S   V+ +  +W  +L              I  + S+  RLD+ + +E+E  LI +D+GV
Sbjct: 84  STPTVSVDKPNWRERLRGSL------FARNINALFSNNPRLDENLLDEIETALITADVGV 137

Query: 61  AVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +    IV+ L  +  A++   +Q +L  +   +  +L P+SKP        P V LVVGV
Sbjct: 138 STTNAIVDGLRKRMKAREFADIQTLLAALRNELITILRPVSKPLIVKRDALPFVFLVVGV 197

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NGVGKTT IGKL+K     G  +MLAAGDTFR+AA+ QL+ W +R S   +  +   +DA
Sbjct: 198 NGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWGERNSITVIAQKGPNADA 257

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+A + A+A+ ++VLI DTAGRLH    LM  + K+ RVL +LD  APH VL V+D
Sbjct: 258 ASVVYDALQAAKARSIEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVID 317

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            TTGQNAL Q+  FHA    TG+++TK+DGTA+GG +  +     IP++F+ +GE + D+
Sbjct: 318 GTTGQNALSQLRQFHAAVNVTGIVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDM 377

Query: 299 EPFVAKDFSAVIT 311
             F  + F   + 
Sbjct: 378 HFFDPEAFVDALL 390


>gi|218261904|ref|ZP_03476577.1| hypothetical protein PRABACTJOHN_02248 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223698|gb|EEC96348.1| hypothetical protein PRABACTJOHN_02248 [Parabacteroides johnsonii
           DSM 18315]
          Length = 317

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 129/312 (41%), Positives = 182/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   IT  I    ++DD V + LE++LI SD+GV    K
Sbjct: 5   SFFSKEKKETLDKGLSKTKENVFSKITRAIAGKSKVDDEVLDNLEEVLITSDVGVDTTLK 64

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVN 120
           I+  +  +    K V+   +   + E I  +L        + F      +P+VI+VVGVN
Sbjct: 65  IISRIEDRVARDKYVTTSELTAILREEIASLLTENHTEDLESFTVPEDKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW++R     V  ++GSD A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKNVYLGAADTFRAAAVEQLVIWSERVGVPIVKQKMGSDPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A+A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +
Sbjct: 185 VAFDTLSSAKANGADVVIIDTAGRLHNKINLMNELTKIKNVMKKVVPDAPHEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F A      L +TK+DGTA+GG +I I    +IPV ++G+GEGI DL+ 
Sbjct: 245 TGQNAFEQAKQFTAATEVNALAVTKLDGTAKGGVVIGISDHFRIPVKYIGLGEGIEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FNRKEFVNSLFG 316


>gi|167854879|ref|ZP_02477655.1| signal recognition particle protein (sigma-54 like protein)
           [Haemophilus parasuis 29755]
 gi|167853946|gb|EDS25184.1| signal recognition particle protein (sigma-54 like protein)
           [Haemophilus parasuis 29755]
          Length = 463

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLKNITGKGRLTEDNIKDTLREVRIALLEADVALPVVREFINKVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQTELEKAMGEANEGLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVDIAEAALKHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|145297735|ref|YP_001140576.1| signal recognition particle protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850507|gb|ABO88828.1| signal recognition particle protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 459

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTERLSRTLRNVSGRGRLTEENIKDTLREVRMALLEADVALPVVRDFVARVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   +  ++   ++  N   +  P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVAKSLSPGQAFIKIVHGELVSVMGEANEQLNL-AAQPPVIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S+       +A  A  QA+
Sbjct: 121 AKLLKERSKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSDASQKPVDIATAAIDQAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRLH +S +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVVIVDTAGRLHVDSDMMDEIIHLHATIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      PV F+G+GE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKADGDARGGAALSVRHITGKPVKFIGMGEKTDALEPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|99081783|ref|YP_613937.1| signal recognition particle-docking protein FtsY [Ruegeria sp.
           TM1040]
 gi|99038063|gb|ABF64675.1| signal recognition particle-docking protein FtsY [Ruegeria sp.
           TM1040]
          Length = 386

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 127/276 (46%), Positives = 190/276 (68%), Gaps = 1/276 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E LE++LI SD+GV  A ++   +   R  + VS + +   ++  I +++ 
Sbjct: 108 RRVLDDDMLESLEEMLIASDMGVDTALRVTANIAEGRMGRRVSGREIRELLAAEIARVME 167

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P     S +P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++Q
Sbjct: 168 PVARPMPLYPS-KPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQ 226

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W DR     + +  GSD A+LA++A  +A+A   D+L+IDTAGRL N + LM  + K
Sbjct: 227 LQVWGDRAGVPVLTAPEGSDPASLAFDAMTKAEADGADLLMIDTAGRLQNRADLMEELAK 286

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV+++ DP+APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+DGTA+GG L+ 
Sbjct: 287 IVRVIRKKDPNAPHNTLLVLDATTGQNALSQVETFRQLADVSGLVMTKLDGTAKGGVLVA 346

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +     +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 347 LADKFGLPIHAIGVGEQIDDLSPFDPEEFAAALTGL 382


>gi|296532246|ref|ZP_06894991.1| cell division protein FtsY [Roseomonas cervicalis ATCC 49957]
 gi|296267431|gb|EFH13311.1| cell division protein FtsY [Roseomonas cervicalis ATCC 49957]
          Length = 328

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 139/310 (44%), Positives = 209/310 (67%), Gaps = 1/310 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  +    +  +L  G + ++ +L +G+T + + R+LD+   EELE+ LI +D+GVA +Q
Sbjct: 18  EDDTPRGGFFARLKAGLSRSTARLTDGLTGLFTRRKLDEAALEELEEALITADLGVAASQ 77

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +IVE     R+ K+VS   V   ++E I  +L P++KP   D + RPHV+LVVGVNG GK
Sbjct: 78  RIVERFRKTRFGKEVSDTEVKEALAEEIAAILAPVAKPLEIDAAKRPHVVLVVGVNGTGK 137

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAY 183
           TT I KL ++  + G KV   AGDTFR+AA++QL+IW +RT A     ++ G+DAA LA+
Sbjct: 138 TTTIAKLGQQFGEQGKKVAFVAGDTFRAAAVEQLQIWGNRTGAQVHAPAKQGADAAGLAF 197

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A K AQA   ++L++DTAGRLHN   LM  + K++RV++R+DP APHSVL VLDATTGQ
Sbjct: 198 DALKAAQADGTEILLVDTAGRLHNKGALMEELRKVVRVMQRVDPTAPHSVLLVLDATTGQ 257

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA +Q ++F  +   TGL++TK+DG+A+GG ++ +     +PV+ +GVGE   DL PF A
Sbjct: 258 NATQQCKVFAEMVNVTGLVVTKLDGSAKGGIVVALAQEFGLPVHAVGVGEKAADLRPFSA 317

Query: 304 KDFSAVITGC 313
           +D++  + G 
Sbjct: 318 RDYARSLLGL 327


>gi|89091990|ref|ZP_01164945.1| signal recognition particle GTPase [Oceanospirillum sp. MED92]
 gi|89083725|gb|EAR62942.1| signal recognition particle GTPase [Oceanospirillum sp. MED92]
          Length = 470

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + +  +    +L +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLSERLTQTLRSVTGQAKLTEDNIKGTLREVRMALLEADVALPVVKEFVNSVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V+E + K++   ++  N   +  P V+++ G+ G GKTT + KL
Sbjct: 62  TEVTKSLTPGQVFVKIVNEEMIKVMGEANEKLNL-AATPPAVVMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            + +      KV++ + D +R AAI QL+  A     DF  S    D   +A  A   A+
Sbjct: 121 GRHLREREKKKVLVVSADVYRPAAIKQLETLAGEVEVDFFPSTADQDPVDIANAAIAHAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 IQHHDVVLVDTAGRLHVDEDMMGEIKRLHEAVN------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V   TG+++TK DG ARGG  + +      P+ FLGVGE ++ LEPF     ++ I
Sbjct: 235 AFNEVLPLTGVVLTKTDGDARGGAALSVRQITGKPIKFLGVGEKVDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|290967715|ref|ZP_06559270.1| signal recognition particle protein [Megasphaera genomosp. type_1
           str. 28L]
 gi|290782231|gb|EFD94804.1| signal recognition particle protein [Megasphaera genomosp. type_1
           str. 28L]
          Length = 451

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S + +E    +    +L++       +E+   L+ +D+   VA+  ++ +  K  
Sbjct: 2   AFESLSERFQEAFKKLRGKGKLNEEDVREALKEIRRALLEADVNFTVAKDFIKRVQEKAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V     + Q V+  V + + ++L           S  P V+++ G+ G GKTT   K
Sbjct: 62  GEEVFGSLNASQTVIKIVRDELTELLGGTQSRLTVS-SKPPTVLMLAGLQGAGKTTTAAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +   G   +L A D +R AAI QL+I  +  +      E   D   +   A   A 
Sbjct: 121 LAKHLKQKGKNPLLVAADVYRPAAITQLEILGNELNIPVYKEENCQDPVGIVSRAVPYAT 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   D +IIDTAGRLH N +LM  +  +   +       PH +L V+DA TGQ+A+    
Sbjct: 181 AHLCDTVIIDTAGRLHINEVLMDELIHIKETVH------PHEILLVVDAMTGQDAVTAAS 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A  G  GLIMTK+DG ARGG  + I      P+ F+GV E  + LE F    +++ I
Sbjct: 235 AFDAALGIDGLIMTKLDGDARGGAALSIKAVTGKPIKFIGVSEKTDGLEEFHPHRYASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDLGD 299


>gi|154492268|ref|ZP_02031894.1| hypothetical protein PARMER_01902 [Parabacteroides merdae ATCC
           43184]
 gi|154087493|gb|EDN86538.1| hypothetical protein PARMER_01902 [Parabacteroides merdae ATCC
           43184]
          Length = 317

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 182/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   IT  I    ++DD V + LE++LI SD+GV    K
Sbjct: 5   SFFSKEKKETLDKGLSKTKENVFSKITRAIAGKSKVDDEVLDNLEEVLITSDVGVDTTLK 64

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVN 120
           I+  +  +    K V+   +   + E I  +L        + F      +P+VI+VVGVN
Sbjct: 65  IISRIEDRVARDKYVTTSELTAILREEIASLLTENHTEDLESFTVPEDKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW++R     V  ++GSD A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKNVYLGAADTFRAAAVEQLVIWSERVGVPIVKQKMGSDPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A+A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +
Sbjct: 185 VAFDTLSSAKANGADVVIIDTAGRLHNKINLMNELTKIKNVMKKVVPDAPHEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F A      L +TK+DGTA+GG +I I    +IPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTAATEVNALAVTKLDGTAKGGVVIGISDHFRIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FNRKEFVNSLFG 316


>gi|121533796|ref|ZP_01665623.1| signal recognition particle protein [Thermosinus carboxydivorans
           Nor1]
 gi|121307787|gb|EAX48702.1| signal recognition particle protein [Thermosinus carboxydivorans
           Nor1]
          Length = 444

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/299 (29%), Positives = 149/299 (49%), Gaps = 15/299 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-- 79
           +  S +L+      ++   + D +RE +   L+ +D+   VA+  +  +  +   ++V  
Sbjct: 9   SRLSKRLRG--RGKLTESDVSDALRE-VRMALLEADVNFKVAKDFIARVKERAVGQEVMA 65

Query: 80  ---SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
                Q V+  V E + +++           S  P V+++VG+ G GKTT  GKL+  + 
Sbjct: 66  SLTPAQHVIKIVYEELTQLMGGTQSRITIS-SRPPTVVMLVGLQGAGKTTTAGKLAHLLK 124

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               + +L A D +R AAI QL++  ++                +A +A + A +   D+
Sbjct: 125 KQNKRPLLVAADVYRPAAIKQLQVLGEKLGLPVFTLGDKESPVRIAQKAIEHALSHARDI 184

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +IIDTAGRLH N  LM  +  +   +K      PH +L V+DA TGQ+A+   E F+   
Sbjct: 185 VIIDTAGRLHINEQLMDELKAIKNTVK------PHEILLVVDAMTGQDAVTVAEAFNEQL 238

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  G+I+TK+DG ARGG  + +      P+ ++G+GE ++ LEPF     ++ I G  D
Sbjct: 239 GIDGVILTKLDGDARGGAALSVRAVTGRPIKYVGMGEKLDALEPFYPDRMASRILGMGD 297


>gi|254362682|ref|ZP_04978769.1| cell division protein FtsY [Mannheimia haemolytica PHL213]
 gi|261493203|ref|ZP_05989730.1| cell division protein FtsY [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496553|ref|ZP_05992933.1| cell division protein FtsY [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153094301|gb|EDN75165.1| cell division protein FtsY [Mannheimia haemolytica PHL213]
 gi|261307756|gb|EEY09079.1| cell division protein FtsY [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311053|gb|EEY12229.1| cell division protein FtsY [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 498

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 125/305 (40%), Positives = 193/305 (63%), Gaps = 2/305 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L +G   T   +  G  +    +++DD + EELE+ L+ +D+G+   QKI+  L 
Sbjct: 191 GFFSRLIQGLIKTKQNIGSGFRNFFRGKKIDDELFEELEEQLLVADLGMPTTQKIINNLT 250

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                + +    +LY  +   + ++L P+++P   + + +P+VIL+VGVNGVGKTT IGK
Sbjct: 251 QHATKQQLKDADLLYQQLKVELGEVLKPVAQPLVLE-AKKPYVILMVGVNGVGKTTTIGK 309

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  VMLAAGDTFR+AA++QL++W +R +   V    GSD+A++ ++A + A 
Sbjct: 310 LARKFQQEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAA 369

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK +DVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TGQNA+ Q +
Sbjct: 370 AKGIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAK 429

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I DL PF A++F   +
Sbjct: 430 LFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEFIEAL 489

Query: 311 TGCLD 315
               D
Sbjct: 490 FSHED 494


>gi|56414642|ref|YP_151717.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363569|ref|YP_002143206.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128899|gb|AAV78405.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095046|emb|CAR60592.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 453

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKKKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|156932848|ref|YP_001436764.1| signal recognition particle protein [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531102|gb|ABU75928.1| hypothetical protein ESA_00645 [Cronobacter sakazakii ATCC BAA-894]
          Length = 453

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQSLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A +   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|50122282|ref|YP_051449.1| signal recognition particle protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612808|emb|CAG76258.1| signal recognition particle protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 453

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HDVNKSLTPGQEFVKIVKNELVSAMGEINAELNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +      KV++ + D +R AAI QL+  A +   DF  S+      A+   A + A+
Sbjct: 121 GKFLREKQKKKVLVVSADVYRPAAIKQLETLAQQVGVDFFPSDAQEKPLAIVERALQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDDAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|218701122|ref|YP_002408751.1| signal recognition particle protein [Escherichia coli IAI39]
 gi|218371108|emb|CAR18936.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli IAI39]
          Length = 453

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL   A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLVTLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|310766680|gb|ADP11630.1| signal recognition particle protein [Erwinia sp. Ejp617]
          Length = 453

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFIVRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   +   +   +   N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  QEVNKSLTPGQEFVKIVKNELVAAMGEENNTLNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++      +   A +QA+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFCPSDLSQRPVDIVKNALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A     
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ F+GVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPDRIASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|296104280|ref|YP_003614426.1| signal recognition particle protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058739|gb|ADF63477.1| signal recognition particle protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 453

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVSAMGEENQVLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A +   DF  S++      +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFFPSDVAQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|153827348|ref|ZP_01980015.1| signal recognition particle protein [Vibrio cholerae MZO-2]
 gi|153830759|ref|ZP_01983426.1| signal recognition particle protein [Vibrio cholerae 623-39]
 gi|183179684|ref|ZP_02957895.1| signal recognition particle protein [Vibrio cholerae MZO-3]
 gi|229512829|ref|ZP_04402296.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae TMA
           21]
 gi|229520856|ref|ZP_04410278.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae TM
           11079-80]
 gi|229525220|ref|ZP_04414625.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae bv.
           albensis VL426]
 gi|229530373|ref|ZP_04419761.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           12129(1)]
 gi|254292068|ref|ZP_04962844.1| signal recognition particle protein [Vibrio cholerae AM-19226]
 gi|297580693|ref|ZP_06942619.1| signal recognition particle protein [Vibrio cholerae RC385]
 gi|148873768|gb|EDL71903.1| signal recognition particle protein [Vibrio cholerae 623-39]
 gi|149738743|gb|EDM53085.1| signal recognition particle protein [Vibrio cholerae MZO-2]
 gi|150422016|gb|EDN13987.1| signal recognition particle protein [Vibrio cholerae AM-19226]
 gi|183013095|gb|EDT88395.1| signal recognition particle protein [Vibrio cholerae MZO-3]
 gi|229332146|gb|EEN97634.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           12129(1)]
 gi|229338801|gb|EEO03818.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae bv.
           albensis VL426]
 gi|229342089|gb|EEO07085.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae TM
           11079-80]
 gi|229350078|gb|EEO15031.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae TMA
           21]
 gi|297535109|gb|EFH73944.1| signal recognition particle protein [Vibrio cholerae RC385]
          Length = 461

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V  +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V + +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A+    DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSSPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|325263003|ref|ZP_08129739.1| signal recognition particle protein [Clostridium sp. D5]
 gi|324032097|gb|EGB93376.1| signal recognition particle protein [Clostridium sp. D5]
          Length = 451

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 151/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++ S  RL +       +E++  L+ +D+   V +  V+++  +  
Sbjct: 2   AFDSLTEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKGFVKDVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + +++   +            VI++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEEMVRLMGSETTEIQLQPGSAITVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G K +L A D +R AAI QL+I  ++   +       +  A +A  A++ A 
Sbjct: 122 LAGKYKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSMGDKNKPADIAKAAYEHAV 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+    
Sbjct: 182 KNGNNIVILDTAGRLHIDEDMMAELQEIKEAVT------VHQTILVVDAMTGQDAVNVAG 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 SFHEKIGIDGVIVTKLDGDTRGGAALSIKAVTGRPILYIGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|161502225|ref|YP_001569337.1| signal recognition particle protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863572|gb|ABX20195.1| hypothetical protein SARI_00249 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 453

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFSSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|170684039|ref|YP_001744793.1| signal recognition particle protein [Escherichia coli SMS-3-5]
 gi|170521757|gb|ACB19935.1| signal recognition particle protein [Escherichia coli SMS-3-5]
          Length = 453

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALSLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|150025489|ref|YP_001296315.1| cell division protein FtsY [Flavobacterium psychrophilum JIP02/86]
 gi|149772030|emb|CAL43506.1| Cell division protein FtsY [Flavobacterium psychrophilum JIP02/86]
          Length = 317

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 129/313 (41%), Positives = 187/313 (59%), Gaps = 15/313 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGV 60
           +++ +K         L KG   +S      +T  I    ++DD V + LE++L+ SD+GV
Sbjct: 1   MNFFKKIFSSEKKENLDKGLEKSSNSFLSKLTKAIAGKSKVDDDVLDNLEEILVSSDVGV 60

Query: 61  AVAQKIVEELLTKR-YAKDVSVQRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVIL 115
               KI++ +  +    K +    +   + E I  +L       +  F      +P+VI+
Sbjct: 61  NTTLKIIQRIEARVSNNKYLGTDELNKILREEIAGLLSETNTGEATKFEIPAHKKPYVIM 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT IGKL+ +   +G  V+L AGDTFR+AAIDQL+IWADR     V  ++G
Sbjct: 121 VVGVNGVGKTTTIGKLANQFKKSGYSVVLGAGDTFRAAAIDQLQIWADRVGVPIVRQQMG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++A++  + A A+  DV+IIDTAGRLHN   LM  + K+ RV++++ P APH V+ 
Sbjct: 181 SDPASVAFDTLQSAVAQNADVVIIDTAGRLHNKIGLMNELTKIKRVMEKVIPEAPHDVML 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGI
Sbjct: 241 VLDGSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGI 300

Query: 296 NDLEPFVAKDFSA 308
           NDL+ F   +F  
Sbjct: 301 NDLQVFNKYEFVD 313


>gi|332827122|gb|EGJ99907.1| signal recognition particle-docking protein FtsY [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 317

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 187/312 (59%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
            +  K     L KG   T   +   ++ +I+ + ++DD V ++LE++LI SD+GV    K
Sbjct: 5   DFFSKQKKETLDKGLEKTKESMFSKLSRVIAGKSKVDDDVLDQLEEVLIMSDVGVNTTLK 64

Query: 66  IVEELLTKR-YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVN 120
           I+E +  +    K V  + +   + E I  +L   +   N DFS     +P+VI+VVGVN
Sbjct: 65  IIERIEKRAAKDKYVDDKELKNILREEIADLLTENNAVDNDDFSVPETAKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     +   +GSD A+
Sbjct: 125 GVGKTTTIGKLANQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVIKQAMGSDPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A++   DV+IIDTAGRLHN   LM  + K+ +V+ ++ P APH VL VLD +
Sbjct: 185 VAFDTLSSAKSNNADVVIIDTAGRLHNKIGLMNELSKIKKVMDKIVPGAPHEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q   F A    T L +TK+DGTA+GG +I I    KIPV ++G+GEGI+DL+ 
Sbjct: 245 TGQNAFEQATQFTAATDVTALAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIDDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  ++F   + G
Sbjct: 305 FRRREFVNSLFG 316


>gi|260588673|ref|ZP_05854586.1| signal recognition particle protein [Blautia hansenii DSM 20583]
 gi|331081978|ref|ZP_08331106.1| signal recognition particle protein [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541148|gb|EEX21717.1| signal recognition particle protein [Blautia hansenii DSM 20583]
 gi|330405573|gb|EGG85103.1| signal recognition particle protein [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 448

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 155/305 (50%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++    RL +       +E++  L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFESLTDKLQNVFKNLRKKGRLTEADVKAALKEVKMALLEADVSFKVVKQFMKAVQERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +        +   V+++VG+ G GKTT   K
Sbjct: 62  GQDVMSGLNPGQMVIKIVNEELVKLMGSETTEIALKSGNEVTVLMMVGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+   G K +LAA D +R AAI QL++  ++   D       +    +A  A++ A+
Sbjct: 122 LAGKLKSKGKKPLLAACDVYRPAAIKQLQVNGEKQGVDVFSMGDKNSPVDIAKAAYEHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +K +VLI+DTAGRLH +  +M  + K+   +           L V+DA TGQ+A+   E
Sbjct: 182 NEKYNVLILDTAGRLHIDEDMMEELEKIKEAIT------VDQTLLVVDAMTGQDAVNVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I+TKMDG  RGG  + I      P+ ++G+GE ++DLE F  +  ++ I
Sbjct: 236 TFGEKVGIDGVILTKMDGDTRGGAALSIKAISGKPILYVGMGEKLSDLEQFYPERMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|288927529|ref|ZP_06421376.1| signal recognition particle-docking protein FtsY [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288330363|gb|EFC68947.1| signal recognition particle-docking protein FtsY [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 317

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 129/311 (41%), Positives = 183/311 (58%), Gaps = 11/311 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
            +  K     L KG   T   +   +T  I    ++DD V ++LE++LI SD+GV    K
Sbjct: 5   GFFNKSKKETLDKGLEKTKQSVFSKLTRAIAGKSKVDDEVLDDLEEILITSDVGVDTTLK 64

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----PHVILVVGVN 120
           I+E + T+    K VS   +   + E I  +L   +   N  +       P+VILVVGVN
Sbjct: 65  IIERIETRVARDKYVSTSELNNILKEEITALLSENNTQDNDSWELPDTGNPYVILVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG KV L A DTFR+AA++Q+ IW +R     V  ++GSD A+
Sbjct: 125 GVGKTTTIGKLAHQFKQAGKKVYLGAADTFRAAAVEQICIWGERVGVPVVKQQMGSDPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A+A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +
Sbjct: 185 VAFDTLSSAKANGADVVIIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPNEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFSAVTNITALAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQL 304

Query: 301 FVAKDFSAVIT 311
           F  + F   + 
Sbjct: 305 FNRQHFVDSLF 315


>gi|300819917|ref|ZP_07100100.1| signal recognition particle protein [Escherichia coli MS 107-1]
 gi|300527505|gb|EFK48567.1| signal recognition particle protein [Escherichia coli MS 107-1]
          Length = 453

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL+ DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLADTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|330807704|ref|YP_004352166.1| Signal recognition particle protein (From sprot) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375812|gb|AEA67162.1| Signal recognition particle protein (From sprot) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 458

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N      P V+L+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAV-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++  + D +R AAI QL+  A+     F  S++      +A  A K+A+
Sbjct: 121 ARFLKERKKKSVMVVSADIYRPAAIKQLETLANDIGVTFFPSDLSQKPVDIAQAAIKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHIDEEMMGEIKALHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF  +  ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|224584530|ref|YP_002638328.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469057|gb|ACN46887.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 453

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  N LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTNALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|27262314|gb|AAN87438.1| signal recognition particle receptor FtsY [Heliobacillus mobilis]
          Length = 364

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 119/267 (44%), Positives = 173/267 (64%), Gaps = 4/267 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  +L +G   T   L + +  +++ R ++DD + +ELE+ LI +D+G   + ++VE L
Sbjct: 3   GFFNRLKEGLTRTRQNLVDKVEALVTGRTKIDDDLYDELEEALISADVGAETSIELVERL 62

Query: 71  LTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K   + +S   +L   + E I  +L   + P N    ++P VIL+VGVNGVGKTT I 
Sbjct: 63  RRKVKEQKISDPSLLQGLLQEEIAAILGGEAIPVNLG--NQPTVILIVGVNGVGKTTTIA 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV+LAAGDTFR+AAIDQL+IW  R   + +  + G+D +A+A++A + A
Sbjct: 121 KLAHRWKQEGRKVLLAAGDTFRAAAIDQLEIWGQRVGVEVIRHQEGADPSAVAFDAVQAA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           ++++ DVLIIDTAGRLHN S LM  + K+ RVL R  P APH  L VLDATTGQNAL Q 
Sbjct: 181 KSRESDVLIIDTAGRLHNKSHLMNELSKINRVLGRAMPGAPHETLLVLDATTGQNALSQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +F    G TGL++TK+DGTA+GG ++
Sbjct: 241 RIFGEAVGLTGLVLTKLDGTAKGGVIL 267


>gi|270290355|ref|ZP_06196580.1| signal recognition particle protein [Pediococcus acidilactici 7_4]
 gi|270281136|gb|EFA26969.1| signal recognition particle protein [Pediococcus acidilactici 7_4]
          Length = 477

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++   ++    ++ +        E+   L+ +D+   V +K V+ +  +  
Sbjct: 2   AFEGLTERLQKTFNNLRKKGKVTEADLRDTMREIRLALLEADVNFTVVKKFVKTVREQAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             D+       Q+++  V++ + KM+   + P N      P VI++ G+ G GKTT  GK
Sbjct: 62  GSDILEGLNPAQQIVKLVNDELVKMMGTEASPLN-QAPKIPTVIMMAGLQGAGKTTTTGK 120

Query: 131 LSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+ +    + +L A D +R AAIDQL    ++                +     +QA
Sbjct: 121 LALKLKNEKKARPLLIAADVYRPAAIDQLVQVGEQIDVPVYQEGTDVSPVEIVRHGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D + IDTAGRL  +  LM  +  +       D   P  +L V+DA TGQNA+   
Sbjct: 181 AENKNDYVFIDTAGRLQIDEKLMQELADIK------DLAHPDEILLVVDAMTGQNAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+I+TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 235 EGFNDKLDVTGVILTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMEDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|84500000|ref|ZP_00998266.1| signal recognition particle-docking protein FtsY [Oceanicola
           batsensis HTCC2597]
 gi|84391934|gb|EAQ04202.1| signal recognition particle-docking protein FtsY [Oceanicola
           batsensis HTCC2597]
          Length = 440

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 133/282 (47%), Positives = 193/282 (68%), Gaps = 2/282 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           +  R LDD + E+LE+LLI SD+GV  A ++   +   R  + +S   +   +++ + ++
Sbjct: 158 VVRRALDDDMLEQLEELLIASDMGVDTALRVASNMAEGRMGRRLSTAEIKGLLADEVTRI 217

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + P+++P    F  +P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA+
Sbjct: 218 MEPVARPLPL-FPKKPQVVLVVGVNGSGKTTTIGKLASQFRGAGKSVVIAAGDTFRAAAV 276

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+IW DR     + +  GSD AALAY+A ++A+A+  D+L+IDTAGRL N + LM  +
Sbjct: 277 EQLEIWGDRAGVPVLKAAEGSDPAALAYDALEKAEAEGADLLMIDTAGRLQNRADLMEEL 336

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K++RVL++ DP APH+ L VLDATTGQNAL QVE F  +A  TGL+MTK+DGTA+GG L
Sbjct: 337 AKIVRVLRKRDPSAPHNTLLVLDATTGQNALSQVETFRKMADVTGLVMTKLDGTAKGGVL 396

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           + +     +P++ +GVGE I+DL PF   DF+  +TG  D G
Sbjct: 397 VALADKFGLPIHAIGVGEQIDDLAPFDPGDFARALTGA-DLG 437


>gi|295097178|emb|CBK86268.1| signal recognition particle subunit FFH/SRP54 (srp54) [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 453

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVSAMGEENQVLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++      +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVAQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|163746083|ref|ZP_02153442.1| signal recognition particle-docking protein FtsY [Oceanibulbus
           indolifex HEL-45]
 gi|161380828|gb|EDQ05238.1| signal recognition particle-docking protein FtsY [Oceanibulbus
           indolifex HEL-45]
          Length = 461

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 123/278 (44%), Positives = 190/278 (68%), Gaps = 1/278 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           +  R LDD + E+LE+LLI +D+GV  A ++   +   R+ K +SV  +   ++  + ++
Sbjct: 183 VVRRTLDDDMLEQLEELLISADMGVDTALRVTANMAEGRFGKKLSVGEIKQLLATEVSRI 242

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + P+++P    +S  P V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA+
Sbjct: 243 MEPVARPLPI-YSKTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKKVVIAAGDTFRAAAV 301

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL++W +R     + +  GSD A+LA++A  +AQ +  D+L+IDTAGRL N   LM  +
Sbjct: 302 EQLQVWGERAGVPVLTAAHGSDPASLAFDAMGRAQEEGADLLLIDTAGRLQNRGDLMEEL 361

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K++RV+++ D  APH+ L VLDATTGQNAL QV++F  ++  +GL+MTK+DGTA+GG L
Sbjct: 362 AKIVRVIRKKDETAPHNTLLVLDATTGQNALNQVKVFQEISDVSGLVMTKLDGTAKGGVL 421

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           + +     +P++ +GVGE I+DL PF   +F+A + G 
Sbjct: 422 VALADRFGLPIHAVGVGEQIDDLSPFDPDEFAAALVGI 459


>gi|34540014|ref|NP_904493.1| signal recognition particle-docking protein FtsY [Porphyromonas
           gingivalis W83]
 gi|188994128|ref|YP_001928380.1| signal recognition particle-docking protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|34396325|gb|AAQ65392.1| signal recognition particle-docking protein FtsY [Porphyromonas
           gingivalis W83]
 gi|188593808|dbj|BAG32783.1| signal recognition particle-docking protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 317

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 126/302 (41%), Positives = 186/302 (61%), Gaps = 6/302 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L +G + T   +   IT  ++ + ++DD V +ELE++L+ SD+GV    KI++ +  +  
Sbjct: 15  LDEGLSKTKENVFAKITRAVAGKSKVDDEVLDELENVLVTSDVGVDTTLKIIKRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   + + I  +L          F+     +P+VI+VVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTSELTTILRQEIASLLTENGSADGDSFDLPSGTKPYVIMVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG  V+L A DTFR+AA++QL+IW++R     +  ++GSD A++AY+    A 
Sbjct: 135 LAHRFRQAGKSVVLGAADTFRAAAVEQLEIWSERVGVPIIKQQMGSDPASVAYDTVSSAV 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A  VDV+IIDTAGRLHN   LM  + K+ RV++++ P APH +L VLD +TGQNA  Q  
Sbjct: 195 ANGVDVVIIDTAGRLHNKVNLMNELTKIKRVMQKVVPDAPHEILLVLDGSTGQNAFEQAR 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A      L +TK+DGTA+GG +I I    KIPV ++G+GEGI+DL+ F  K+F   +
Sbjct: 255 QFTAATEVNALAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIDDLQIFRKKEFVDSL 314

Query: 311 TG 312
            G
Sbjct: 315 FG 316


>gi|167856451|ref|ZP_02479171.1| cell division protein [Haemophilus parasuis 29755]
 gi|167852434|gb|EDS23728.1| cell division protein [Haemophilus parasuis 29755]
          Length = 455

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 123/309 (39%), Positives = 193/309 (62%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+  +    +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+   
Sbjct: 142 QEKPTSEGGFFSRLIKGLIKTKQSIGSGFRNFFSGKKIDDELFEELEEQLLVADLGMPTT 201

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI++ L      + +    +LY  +   +  +L P+++    +   +P+VIL+VGVNGV
Sbjct: 202 TKIIKNLTEHATKQQLRDAELLYQQLKVELADVLKPVAQSLVLE-DKKPYVILMVGVNGV 260

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ 
Sbjct: 261 GKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGADSASVI 320

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A AK +DVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TG
Sbjct: 321 FDAMQSAAAKGIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTG 380

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I+DL  F 
Sbjct: 381 QNAISQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIDDLRSFD 440

Query: 303 AKDFSAVIT 311
           A++F   + 
Sbjct: 441 AEEFIEALF 449


>gi|259416345|ref|ZP_05740265.1| cell division protein FtsY [Silicibacter sp. TrichCH4B]
 gi|259347784|gb|EEW59561.1| cell division protein FtsY [Silicibacter sp. TrichCH4B]
          Length = 388

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 128/278 (46%), Positives = 191/278 (68%), Gaps = 1/278 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E LE++LI SD+GV  A ++   +   R  + VS + +   +++ I +++ 
Sbjct: 110 RRVLDDDMLESLEEMLIASDMGVDTALRVTANIAEGRMGRRVSGREIRELLAQEIARVME 169

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P     S +P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++Q
Sbjct: 170 PVARPMPLYPS-KPQVVLVVGVNGSGKTTTIGKLASQFRAAGKTVVIAAGDTFRAAAVEQ 228

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W DR     + +  GSD A+LA++A  +A+A   D+L+IDTAGRL N + LM  + K
Sbjct: 229 LQVWGDRAGVPVLTAPEGSDPASLAFDAMTKAEADGADLLMIDTAGRLQNRADLMEELAK 288

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV+++ DP APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+DGTA+GG L+ 
Sbjct: 289 IVRVIRKKDPEAPHNTLLVLDATTGQNALSQVETFRQLADVSGLVMTKLDGTAKGGVLVA 348

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +     +P++ +GVGE I+DL PF  ++F+A +TG  D
Sbjct: 349 LADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGLED 386


>gi|37525223|ref|NP_928567.1| signal recognition particle protein [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36784650|emb|CAE13550.1| Signal recognition particle protein (P48) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 453

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFISCVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   + K +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVQNELVKAMGEVNSELNLS-TQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
              +      KV++ + D +R AAI QL+  A     DF  S+       +  +A + A+
Sbjct: 121 GSFLKGKQKKKVLVVSADVYRPAAIKQLETLAQAVGIDFYPSDAQEKPVDIVTQAVQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++ + +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHKAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|121591120|ref|ZP_01678429.1| signal recognition particle protein [Vibrio cholerae 2740-80]
 gi|147674906|ref|YP_001216059.1| signal recognition particle protein [Vibrio cholerae O395]
 gi|153820246|ref|ZP_01972913.1| signal recognition particle protein [Vibrio cholerae NCTC 8457]
 gi|227080743|ref|YP_002809294.1| signal recognition particle protein [Vibrio cholerae M66-2]
 gi|229507171|ref|ZP_04396677.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae BX
           330286]
 gi|262169869|ref|ZP_06037559.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           RC27]
 gi|262401736|ref|ZP_06078302.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. RC586]
 gi|121547038|gb|EAX57179.1| signal recognition particle protein [Vibrio cholerae 2740-80]
 gi|126509208|gb|EAZ71802.1| signal recognition particle protein [Vibrio cholerae NCTC 8457]
 gi|146316789|gb|ABQ21328.1| signal recognition particle protein [Vibrio cholerae O395]
 gi|227008631|gb|ACP04843.1| signal recognition particle protein [Vibrio cholerae M66-2]
 gi|227012386|gb|ACP08596.1| signal recognition particle protein [Vibrio cholerae O395]
 gi|229355916|gb|EEO20836.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae BX
           330286]
 gi|262021603|gb|EEY40314.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           RC27]
 gi|262352153|gb|EEZ01283.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. RC586]
          Length = 461

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V  +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V + +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A+    DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|167769126|ref|ZP_02441179.1| hypothetical protein ANACOL_00449 [Anaerotruncus colihominis DSM
           17241]
 gi|167668766|gb|EDS12896.1| hypothetical protein ANACOL_00449 [Anaerotruncus colihominis DSM
           17241]
          Length = 459

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   S KL      + +  +L +  ++E + +    L+ +D+   VA+  V  +  K  
Sbjct: 2   AFEGLSGKLSAVFKKMRNKGKLKESDIKEAMREVRLALLEADVNYKVAKDFVAAVTEKAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q V+  V++ +  ++       N+  S  P ++++ G+ G GKTT   K
Sbjct: 62  GDEVLESLTPAQMVVKIVNDELTNLMGETGARLNFS-SRPPTIVMMCGLQGSGKTTHSAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+    + G + +L A D +R AAI+QLK+  ++            D   +A  A   A+
Sbjct: 121 LALHFREQGKRPLLVACDVYRPAAIEQLKVVGEKAGVPVFDMG-QGDPVEIARRAVMHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGRLH +  LM  + ++       D  +P  +L V+DA  GQ+A+    
Sbjct: 180 DHGNDLVILDTAGRLHIDEALMDELKRI------RDEVSPQEILLVVDAMVGQDAVNVAS 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+I+TK+DG  RGG  + +      PV F+G GE + DLEPF     ++ I
Sbjct: 234 AFDEALGISGVILTKLDGDTRGGAALSVRAVTGKPVKFVGTGEKLGDLEPFYPDRMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|85058523|ref|YP_454225.1| signal recognition particle protein [Sodalis glossinidius str.
           'morsitans']
 gi|84779043|dbj|BAE73820.1| signal recognition particle protein [Sodalis glossinidius str.
           'morsitans']
          Length = 453

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FDNLSDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   +   +   +   N   +H P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVNKSLTPGQEFVKIVRSELVNAMGDENNSLNL-AAHPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +      KV++ + D +R AAI QL+  A+    DF  S+ G     +  +A  QA+
Sbjct: 121 GKYLREKQKKKVLVVSADVYRPAAIKQLETLAETVGVDFFPSDAGQKPIDIVNQALNQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +MA I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDETMMAEIIAIHASIT------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ F+GVGE  + LEPF     +  I
Sbjct: 235 AFNQALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGVGEKTDALEPFYPDRLAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|332879559|ref|ZP_08447254.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332682525|gb|EGJ55427.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 318

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 190/313 (60%), Gaps = 13/313 (4%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG   T       +T  ++ + ++DD V + LE++L+ SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLEKTKESFFGKLTRAVAGKSKVDDDVLDRLEEVLVTSDVGVDTTLN 64

Query: 66  IVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVILVVGV 119
           I++ +  KR A+D  V+V  +   + + I  +L   +    + F      +P+VI+VVGV
Sbjct: 65  IIDRI-EKRVARDKYVTVNELNDILRDEIASLLTENNTADTEGFVLPEGKKPYVIMVVGV 123

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +   AG KV L A DTFR+AA++QL+IW++R     V  ++GSD A
Sbjct: 124 NGVGKTTTIGKLAYQFKKAGKKVYLGASDTFRAAAVEQLEIWSERVGVPIVKQQMGSDPA 183

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++    A A   DV++IDTAGRLHN   LM  + K+ RV++++ P APH V+ VLD 
Sbjct: 184 SVAFDTLSSAMANGADVVLIDTAGRLHNKKGLMDELSKIKRVMQKVVPDAPHDVMLVLDG 243

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+
Sbjct: 244 STGQNAFEQAKQFTLATEVTSMAITKLDGTAKGGVVIGISDQFKIPVRYIGLGEGVEDLQ 303

Query: 300 PFVAKDFSAVITG 312
           PF  K+F   + G
Sbjct: 304 PFNRKEFVKSLFG 316


>gi|90020849|ref|YP_526676.1| signal recognition particle subunit FFH/SRP54 (srp54) /
           transcription elongation factor GreB [Saccharophagus
           degradans 2-40]
 gi|89950449|gb|ABD80464.1| signal recognition particle subunit FFH/SRP54 (srp54) /
           transcription elongation factor GreB [Saccharophagus
           degradans 2-40]
          Length = 495

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 96/310 (30%), Positives = 154/310 (49%), Gaps = 17/310 (5%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLD-DGVREEL---EDLLIRSDIGVAVAQKIVEELL 71
           K    F + S +L      I    RL+ D +++ L      L+ +D+ + V ++   ++ 
Sbjct: 23  KFFTMFENLSDRLSRSFKKITGKARLNHDNIKDALSDVRKALLEADVALPVVKEFTGQVR 82

Query: 72  TKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +   ++VS      Q+ L  V   + +++   ++  N   +  P V+L+ G+ G GKTT
Sbjct: 83  KRAQGQEVSRALNPGQQFLKIVESELTQIMGEANEKLNL-AAQPPAVVLMAGLQGAGKTT 141

Query: 127 VIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
            + KL++ +      KVM+ + D +R AAI QL+  A    A+F  S+ G +   +A  A
Sbjct: 142 SVAKLARFLREREKKKVMVVSADVYRPAAIKQLETLATEVEAEFFPSDAGQNPVDIAKNA 201

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             QA+   VDVL++DTAGRLH +  LM  I  +   +       P   L V+DA  GQ+A
Sbjct: 202 LAQAKKLHVDVLLVDTAGRLHVDEALMEEIQAIHAAVN------PIETLFVIDAMIGQDA 255

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +   + F+     TG+I+TK DG ARGG  + +      P+ FLGVGE    LEPF    
Sbjct: 256 VNTAKAFNDALPLTGVILTKTDGDARGGAALSVRHVTGKPIKFLGVGEKTEALEPFHPDR 315

Query: 306 FSAVITGCLD 315
            ++ I G  D
Sbjct: 316 LASRILGMGD 325


>gi|291563269|emb|CBL42085.1| signal recognition particle protein [butyrate-producing bacterium
           SS3/4]
          Length = 454

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 148/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++    RL +       +E++  L+ +D+   V ++ +  +  +  
Sbjct: 2   AFESLADKLQNVFKNLRGKGRLTEADVKAALKEVKMALLEADVSFKVVKQFISSVQERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +        +   VI+++G+ G GKTT   K
Sbjct: 62  GQDVLESLTPGQMVIKIVNEELVKLMGSETTEIALKPQNEITVIMMIGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G K +LAA D +R AAI QL++  ++            +   +A  A + A+
Sbjct: 122 LAGKFKAKGRKPLLAACDVYRPAAIKQLQVNGEKVGVPVFTMGDNQNPVNIAKAAVEHAR 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + ++++ +DTAGRL  +  +M  +  +   ++          + V+DA TGQ+A+    
Sbjct: 182 KEGMNLVFLDTAGRLQIDESMMDELVNIKEAVE------IDQTILVVDAMTGQDAVNVAG 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 SFNDKIGVDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|266624043|ref|ZP_06116978.1| signal recognition particle protein [Clostridium hathewayi DSM
           13479]
 gi|288864130|gb|EFC96428.1| signal recognition particle protein [Clostridium hathewayi DSM
           13479]
          Length = 327

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 151/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++    RL +       +E++  L+ +D+   V ++ +  +  +  
Sbjct: 2   AFESLSDKLQNVFKNLRGKGRLTEADVKAALKEVKMALLEADVSFRVVKQFISAVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +   +   ++   +I++ G+ G GKTT   K
Sbjct: 62  GQDVMNSLTPGQMVIKIVNEELVNLMGSETTEIHLKPANEITIIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G K +LAA D +R AAI QL+I  ++              A +A  A + A 
Sbjct: 122 IAGKLKAKGRKPLLAACDVYRPAAIKQLQINGEKQGVPVFSMGENHKPADIAKAAVEHAS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRLH +  +M  + ++   ++       H  + V+DA TGQ+A+    
Sbjct: 182 KNDQNVVILDTAGRLHIDEDMMNELVEIKEAVE------VHQTILVVDAMTGQDAVNVAG 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           MF+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 MFNDKIGIDGVILTKLDGDTRGGAALSIRSVTGKPILYIGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|260598989|ref|YP_003211560.1| signal recognition particle protein [Cronobacter turicensis z3032]
 gi|260218166|emb|CBA33004.1| Signal recognition particle protein [Cronobacter turicensis z3032]
          Length = 453

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQSLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A +   DF  S++      +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFFPSDVAQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|114564085|ref|YP_751599.1| signal recognition particle protein [Shewanella frigidimarina NCIMB
           400]
 gi|114335378|gb|ABI72760.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           frigidimarina NCIMB 400]
          Length = 457

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLSDRLSRTLKNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFVNSVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + K +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQNELEKAMGEANEALDL-AAIPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +     K + + + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 GKFLRTRHKKSVLVVSADVYRPAAIKQLETLATEVEVEFFPSDVSQKPVDIAKAAINYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDEAMMDEIKQLHATVN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRSITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|229592399|ref|YP_002874518.1| signal recognition particle protein [Pseudomonas fluorescens SBW25]
 gi|229364265|emb|CAY51982.1| signal recognition particle protein [Pseudomonas fluorescens SBW25]
          Length = 458

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N      P V+L+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAV-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++  + D +R AAI QL++ A      F  S++      +A  A K+A+
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLEMLAGEVGVTFFPSDLSQKPVDIANAAIKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHIDEEMMGEIKALHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE  + LEPF  +  ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSDALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|165922511|ref|ZP_02219682.1| signal recognition particle-docking protein FtsY [Coxiella burnetii
           RSA 334]
 gi|165916716|gb|EDR35320.1| signal recognition particle-docking protein FtsY [Coxiella burnetii
           RSA 334]
          Length = 324

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 189/312 (60%), Gaps = 4/312 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
            N + +     W+ +L +    T  +L +G++++ +  + +D  + EELE +L+ +DIG+
Sbjct: 13  KNNETSKPKKGWLGRLNESLKRTRSRLTDGLSNLVLGKKTIDASLLEELEMILLSADIGI 72

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              Q I+  L  +   K +S  + L D  +  +  +L P  K      S  P VIL VGV
Sbjct: 73  EATQSILNNLSQQVSRKSLSDPKALIDALKIELLNILEPCQKHLEISAS--PFVILTVGV 130

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT I KL+        +VMLAAGDTFR+AAI+QL+ W  R +A     + G+D+A
Sbjct: 131 NGVGKTTTIAKLAHFYQSQKKRVMLAAGDTFRAAAIEQLQTWGQRNNAPVSAQQPGADSA 190

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+A + A A+  D+LI DTAGRLH  S LM  + K+ RV+K+++P APH  L VLDA
Sbjct: 191 SVIYDAMEAATARHYDLLIADTAGRLHTQSHLMDELAKIKRVMKKINPDAPHETLLVLDA 250

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q E FH   G TG+ +TK+DGTA+GG +  I    ++P+ F+G+GE I DL+
Sbjct: 251 GTGQNAINQAEQFHEHIGLTGIAITKLDGTAKGGVIFAIAKKMQLPIRFIGMGEKIEDLK 310

Query: 300 PFVAKDFSAVIT 311
            F AK+F A + 
Sbjct: 311 SFNAKEFIAALF 322


>gi|113461570|ref|YP_719639.1| signal recognition particle subunit FFH/SRP54 (srp54) [Haemophilus
           somnus 129PT]
 gi|112823613|gb|ABI25702.1| signal recognition particle subunit FFH/SRP54 (srp54) [Haemophilus
           somnus 129PT]
          Length = 458

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFIHQVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQTELEKAMGVANEKLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    K+M+ + D +R AAI QL+  A     DF  S +      +A  A  +A+
Sbjct: 121 AKFLKENYKKKIMVVSVDVYRPAAIKQLETLAQSIGVDFYPSNVSQKPVEIARTALAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDDTMMEEIQQIHTVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGIILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|261365904|ref|ZP_05978787.1| signal recognition particle protein [Neisseria mucosa ATCC 25996]
 gi|288565515|gb|EFC87075.1| signal recognition particle protein [Neisseria mucosa ATCC 25996]
          Length = 456

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +  +   +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTNRFSKVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V++ + +++   +   +      P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVTGSLTPDQAFIGVVNQALIELMGKENSSLDLAAV-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNEQKKKVLVVSADVYRPAAIEQLRLLAEQVGIDFFPSDANQKPVEIATAAIDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +K      P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVK------PVETLFVVDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TKMDG +RGG  + +      P+ F+G+GE I  LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKMDGDSRGGAALSVRHVTGKPIKFIGIGEKITGLEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|254362712|ref|ZP_04978796.1| signal recognition particle protein [Mannheimia haemolytica PHL213]
 gi|153094337|gb|EDN75192.1| signal recognition particle protein [Mannheimia haemolytica PHL213]
          Length = 463

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  L  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVNKSLTPGQEFLKIVQSELETAMGEANEELNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E      A+A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVAIAEAALKHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHAVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|146312732|ref|YP_001177806.1| signal recognition particle protein [Enterobacter sp. 638]
 gi|145319608|gb|ABP61755.1| signal recognition particle subunit FFH/SRP54 (srp54) [Enterobacter
           sp. 638]
          Length = 453

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRSLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQVLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A +   DF  S++      +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVEVDFFPSDVAQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|238909520|ref|ZP_04653357.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 453

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALSLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|330995101|ref|ZP_08319018.1| signal recognition particle-docking protein FtsY [Paraprevotella
           xylaniphila YIT 11841]
 gi|329576677|gb|EGG58180.1| signal recognition particle-docking protein FtsY [Paraprevotella
           xylaniphila YIT 11841]
          Length = 318

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 190/313 (60%), Gaps = 13/313 (4%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG   T       +T  ++ + ++DD V + LE++L+ SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLEKTKESFFGKLTRAVAGKSKVDDDVLDRLEEVLVTSDVGVDTTLN 64

Query: 66  IVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVILVVGV 119
           I++ +  KR A+D  V+V  +   + + I  +L   +    + F      +P+VI+VVGV
Sbjct: 65  IIDRI-EKRVARDKYVTVNELNDILRDEIASLLTENNTADTEGFVLPEGKKPYVIMVVGV 123

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +   AG KV L A DTFR+AA++QL+IW++R     V  ++GSD A
Sbjct: 124 NGVGKTTTIGKLAYQFKKAGKKVYLGASDTFRAAAVEQLEIWSERVGVPIVKQQMGSDPA 183

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++    A A   DV++IDTAGRLHN   LM  + K+ RV++++ P APH V+ VLD 
Sbjct: 184 SVAFDTLSSATANGADVVLIDTAGRLHNKKGLMDELSKIKRVMQKVVPDAPHDVMLVLDG 243

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+
Sbjct: 244 STGQNAFEQAKQFTLATEVTSMAITKLDGTAKGGVVIGISDQFKIPVRYIGLGEGVEDLQ 303

Query: 300 PFVAKDFSAVITG 312
           PF  K+F   + G
Sbjct: 304 PFNRKEFVKSLFG 316


>gi|218555190|ref|YP_002388103.1| signal recognition particle protein [Escherichia coli IAI1]
 gi|218361958|emb|CAQ99559.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Escherichia coli IAI1]
          Length = 453

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTCVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|255067740|ref|ZP_05319595.1| signal recognition particle protein [Neisseria sicca ATCC 29256]
 gi|255047951|gb|EET43415.1| signal recognition particle protein [Neisseria sicca ATCC 29256]
          Length = 456

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +  +   +I    +L +D ++E L +    L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTNRFSKVFKNIRGQAKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ + +++   +   +      P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVVGSLTPDQAFIGVVNQALIELMGKENSSLDLAAV-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV++ + D +R AAI+QL++ A++   DF  S+       +A  A   A+
Sbjct: 121 ARLLKNEQKKKVLVVSADVYRPAAIEQLRLLAEQVGIDFFPSDSNQKPVEIATAAIDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVN------PVETLFVVDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TKMDG +RGG  + +      P+ F+G+GE I  LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKMDGDSRGGAALSVRHVTGKPIKFIGIGEKITGLEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|126641975|ref|YP_001084959.1| cell division protein [Acinetobacter baumannii ATCC 17978]
          Length = 301

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 134/297 (45%), Positives = 194/297 (65%), Gaps = 2/297 (0%)

Query: 17  LTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           + +G + T     +G+ +I I  + +DD + EE+E+ L+ +DIGV   + I+  L  +  
Sbjct: 1   MKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTA 60

Query: 76  AKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             D+     LY  + E +  +L P  KP + D +  P+VIL+VGVNGVGKTT IGKL+K+
Sbjct: 61  RGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGKLAKR 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           +   G KVMLAAGDTFR+AA +QL+IW +R     V    G+D+A++ ++AF+ A+AK +
Sbjct: 121 LQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFESARAKGI 180

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLI DTAGRLHN S LM  + K+ RV++++D  APH ++ V+DA TGQNA+ QV+ F  
Sbjct: 181 DVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQ 240

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             G TG+ +TK+DGTA+GG L  I     +P+ F+GVGE I+DL PF AK F A + 
Sbjct: 241 AVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALF 297


>gi|78356147|ref|YP_387596.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218552|gb|ABB37901.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 512

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 158/304 (51%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L          +RL ++ V+E L +    L+ +D+   V ++ ++ +  K   
Sbjct: 2   FDTLSDRLSSVFKKFSGQKRLTEENVQEGLREVRLALLEADVNFKVVKQFIDRVRDKCLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V++ + ++L   +   +     +P+VI++VG+ G GKTT  GKL
Sbjct: 62  QDVLKGLNPAQQVIKIVNDEMIELLGGETTGLDL-RGQQPYVIMMVGLQGSGKTTSTGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +  + ++  LA  D +R AAIDQLK  A +       S +  +   +A  A   A+ 
Sbjct: 121 ANHLRKSKMRPYLAPADVYRPAAIDQLKTLAAQLDLPVYDSTVQMNPVDIARNAVAAARE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ +V+I+DTAGRLH +  LM  +  +   +      AP  +L V DA TGQ+A+   + 
Sbjct: 181 QQCNVVILDTAGRLHIDETLMQELVAIKEAV------APQEILFVADAMTGQDAVTVADA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TKMDG ARGG  + I       V F+G+GE ++DLE F     ++ I 
Sbjct: 235 FNNALDITGVVLTKMDGDARGGAALSIKTVTGKSVKFVGMGEKLSDLEVFHPDRIASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|291542195|emb|CBL15305.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ruminococcus
           bromii L2-63]
          Length = 469

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL      + +  +L +  V+E + +    L+ +D+   VA+    ++  +  
Sbjct: 2   AFEGLADKLGNAFKKLKNKGKLSEKDVKEAMREVRLALLEADVNYKVAKDFTNKVTERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V E +  ++        +  S  P VI++ G+ G GKTT   K
Sbjct: 62  GQDVMQSLTPAQMVVKIVDEELTSLMGGEDARIEF-ASKPPTVIMMCGLQGSGKTTHTAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +   G   +LAA D +R AAIDQLK+  ++           ++   +A EA K+A+
Sbjct: 121 LAKMLKKQGRNPLLAACDVYRPAAIDQLKVVGEKAGVPVFEMG-KANPVKIAKEAIKRAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRLH +  LM  +  + + ++      P+ +L V+D+ TGQ+A+   +
Sbjct: 180 DYGNDVVILDTAGRLHIDEALMDELKNIKKEVE------PNEILLVIDSMTGQDAVNVAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +   TG+I+TK+DG  RGG  + +      P+ F G GE ++D+E F     ++ I
Sbjct: 234 SFNELLDITGVILTKLDGDTRGGAALSVKAVTGRPIKFAGTGEKLDDIEVFHPDRMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|253990679|ref|YP_003042035.1| signal recognition particle protein [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782129|emb|CAQ85293.1| signal recognition particle protein (fifty-four homolog)
           [Photorhabdus asymbiotica]
          Length = 453

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFISCVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   + K +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVQNELVKAMGEVNSELNLS-TQTPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
              +      KV++ + D +R AAI QL+  A     DF  S+       +  +A + A+
Sbjct: 121 GNFLKGRQKKKVLVVSADVYRPAAIKQLETLAQTVGIDFFPSDAQEKPVDIVMKAVQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++  ++       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHEIIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|170718344|ref|YP_001783571.1| signal recognition particle protein [Haemophilus somnus 2336]
 gi|168826473|gb|ACA31844.1| signal recognition particle protein [Haemophilus somnus 2336]
          Length = 458

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFIHQVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQTELEKAMGVANEKLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    K+M+ + D +R AAI QL+  A     DF  S +      +A  A  +A+
Sbjct: 121 AKFLKENYKKKIMVVSVDVYRPAAIKQLETLAQSIGVDFYPSNVSQKPVEIARTALAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDDTMMEEIQQIHTALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGIILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|153874953|ref|ZP_02002963.1| signal recognition particle-docking protein FtsY [Beggiatoa sp. PS]
 gi|152068583|gb|EDN67037.1| signal recognition particle-docking protein FtsY [Beggiatoa sp. PS]
          Length = 328

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 131/316 (41%), Positives = 195/316 (61%), Gaps = 6/316 (1%)

Query: 2   SNQKVASE---SLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSD 57
             +K   E      W+ +L +G + T   L   ++D++   R +DD + EE+E LL+ +D
Sbjct: 11  PEEKTPEEMSKKSGWLDRLKQGLSRTREVLTTDLSDLLQVKRAIDDELLEEIETLLLTAD 70

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNW-DFSHRPHVIL 115
           +GV   Q ++ +L  +   K ++    L+D + E +  +L P+ +P    D S++P VIL
Sbjct: 71  VGVEATQALMTDLTQRVNKKQLNDSEALFDALREKMQAILQPVEQPLILPDKSNKPFVIL 130

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VGVNG GKTT IGKL+K+    G  VMLAAGDTFR+AA++QLK+W +R     +     
Sbjct: 131 MVGVNGAGKTTTIGKLAKRFQAQGHSVMLAAGDTFRAAAVEQLKVWGERNEVPVIAQHDR 190

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D+A++ ++A + A A+ +DVLI DTAGRLH  S LM  + K+ RV+K+LD  APH  L 
Sbjct: 191 ADSASVIFDALQAATARGIDVLIADTAGRLHTQSNLMEELKKVQRVMKKLDDTAPHESLL 250

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DA  GQNA+ Q E FH   G TGL +TK+DGTA+GG +  +     +P+ F+GVGE I
Sbjct: 251 VIDAGIGQNAIVQAEQFHQAIGLTGLTLTKLDGTAKGGIMFAVAKRIGLPIRFIGVGEKI 310

Query: 296 NDLEPFVAKDFSAVIT 311
           +DL PF A +F   + 
Sbjct: 311 DDLRPFEAANFVEALL 326


>gi|312962854|ref|ZP_07777341.1| signal recognition particle protein [Pseudomonas fluorescens WH6]
 gi|311282881|gb|EFQ61475.1| signal recognition particle protein [Pseudomonas fluorescens WH6]
          Length = 458

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N      P V+L+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAV-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++  + D +R AAI QL++ A      F  S++      +A  A K+A+
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLEMLAGEVGVTFFPSDLSQKPVDIANAAIKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHIDEEMMGEIKALHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF  +  ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|220907732|ref|YP_002483043.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 7425]
 gi|219864343|gb|ACL44682.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 7425]
          Length = 606

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 107/314 (34%), Positives = 185/314 (58%), Gaps = 5/314 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            + ++ E ++W++KL +G   T   L   +  I+    L+     E+E LL+++D+GVA 
Sbjct: 291 PEDISVEEITWLQKLRRGLGKTRRGLVNQLKAIVGQGPLNQDAVLEIESLLLQADVGVAA 350

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVG 118
             +I++ L  K   + +     +  + +++  +L         P      ++ ++ L+ G
Sbjct: 351 TDRIIQALQDKMRQETLPPDGAIAYLKQILRGILDQPLQQGYSPTFAPEKNQLNIWLMAG 410

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNGVGKTT IGK++   + +G K ++ A DTFR+AA++Q+KIW +R+  + + +    +D
Sbjct: 411 VNGVGKTTTIGKIAHVATTSGYKCLIGAADTFRAAAVEQVKIWGERSQVEVIANPGKNTD 470

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A   AQA++V++L++DTAGRL N   LM  + K+ R++ +   +A    L VL
Sbjct: 471 PAAVVFDAITAAQAREVELLLVDTAGRLQNKQNLMEELRKIRRIIDKKATNAQVEALLVL 530

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DAT GQN LRQ ++F   A  TG+++TK+DGTA+GG  + +V    +P+ F+G GEGI D
Sbjct: 531 DATLGQNGLRQAQVFAEAAQLTGVVITKLDGTAKGGVALAVVQELGLPIRFIGAGEGITD 590

Query: 298 LEPFVAKDFSAVIT 311
           L PF + +F   + 
Sbjct: 591 LRPFSSYEFVEALL 604


>gi|323702674|ref|ZP_08114335.1| signal recognition particle protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532337|gb|EGB22215.1| signal recognition particle protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 444

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 151/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F     +L+E    +    RL +        E+   L+ +D+   V ++ V  +  +   
Sbjct: 2   FKGLGDRLEEIFKSLKGKGRLTEDDVNQAMREVRMALLEADVNFKVVKEFVAHVKERAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V + + ++L       N      P +I++VG+ G GKTT  GKL
Sbjct: 62  QDVLESLSPAQQVIKIVKDELTELLGGTQAKINLS-PKPPTIIMLVGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +S  G + +L AGD +R AAI QL++  ++ +          D   +A  A +QA +
Sbjct: 121 AKLLSKQGRRPLLVAGDIYRPAAIKQLQVLGEQLNIPVFSLG-QEDPVKIAKAAVEQANS 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRLH N  LM  +  +   +K      PH +L V+DA TGQ A+   + 
Sbjct: 180 TGRDVVIIDTAGRLHINEELMDELANIKASVK------PHEILLVVDAMTGQEAVNVADT 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+IMTK+DG ARGG  + +      P+ F G+GE ++ LEPF     +  I 
Sbjct: 234 FNQKLGLDGIIMTKLDGDARGGAALSVRKVTGCPIKFAGMGEKLDALEPFHPDRMADRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|77457245|ref|YP_346750.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pseudomonas
           fluorescens Pf0-1]
 gi|77381248|gb|ABA72761.1| signal recognition particle protein [Pseudomonas fluorescens Pf0-1]
          Length = 458

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N      P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAV-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++  + D +R AAI QL+  A+     F  S++      +A  A K+A+
Sbjct: 121 ARFLKERKKKSVMVVSADIYRPAAIKQLETLANDIGVTFFPSDLSQKPVDIANAAIKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHIDEEMMGEIKALHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    L+PF  +  ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALDPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|218132452|ref|ZP_03461256.1| hypothetical protein BACPEC_00311 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992562|gb|EEC58564.1| hypothetical protein BACPEC_00311 [Bacteroides pectinophilus ATCC
           43243]
          Length = 452

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 143/305 (46%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++    RL +        E++  L+ +D+   V ++ V+ +  +  
Sbjct: 2   AFDSLSDKLQNIFKNLRGKGRLSESDVKAALREVKMALLEADVNFKVVKQFVKSVEERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +            VI++ G+ G GKTT   K
Sbjct: 62  GQDVMESLTPGQMVIKIVNEEMIKLMGSETTEIALKSGSEITVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G K +L A D +R AA++QLKI  ++            +   +A    + A+
Sbjct: 122 LAGKFKAQGRKPLLVACDVYRPAAVEQLKINGEKQGVPVFAMGTNQNPVDIAKAGIEHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   +++I+DTAGRLH +  +M  +  +   +           + V+D+ TGQ+A+    
Sbjct: 182 SNGNNIVILDTAGRLHVDEDMMTELQNIKSSVG------VDQTILVVDSMTGQDAVNVAS 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I+TK+DG  RGG  + I      P+ + G+GE ++DLE F     ++ I
Sbjct: 236 SFDEKIGIDGVILTKLDGDTRGGAALSIKAVTGKPILYAGMGEKLSDLEQFHPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|464390|sp|P14929|FTSY_NEIGO RecName: Full=Cell division protein ftsY homolog
          Length = 416

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 183/306 (59%), Gaps = 3/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTTGDSAAVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+ +D+++ DTAGRL     LM  I K+ RVL++  P APH ++ VLDA  GQNA
Sbjct: 291 VQAAKAR-IDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAIPGAPHEIIVVLDANIGQNA 349

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  +     +PV ++GVGEGI+DL PF A+ 
Sbjct: 350 VNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDARA 409

Query: 306 FSAVIT 311
           F   + 
Sbjct: 410 FVDRLL 415


>gi|219669784|ref|YP_002460219.1| signal recognition particle-docking protein FtsY
           [Desulfitobacterium hafniense DCB-2]
 gi|219540044|gb|ACL21783.1| signal recognition particle-docking protein FtsY
           [Desulfitobacterium hafniense DCB-2]
          Length = 320

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 136/317 (42%), Positives = 203/317 (64%), Gaps = 2/317 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           K   +   +  KL  G   T  +    + +I+   R++D+ + EELE++LIRSD+GV  +
Sbjct: 3   KEEVQLAGFFTKLKAGLTKTRDQFVTKVEEILTGRRKIDEELYEELEEVLIRSDVGVNTS 62

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++VE L  +   + +     L  V + +   L+   +  N+   H P + LVVGVNGVG
Sbjct: 63  FELVEGLRKEVKKRKLQEAEELKVVLQELIAELLGEEESMNF-AEHGPSIFLVVGVNGVG 121

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+    + G KV+LAAGDTFR+AAIDQL++W  R   + +  + G+D AA+AY
Sbjct: 122 KTTTIGKLAHYFQEEGKKVILAAGDTFRAAAIDQLEVWGQRAGVEVIKQKEGADPAAVAY 181

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+++  D++I+DTAGRLHN   LM  + K+ RV++R  P APH VL VLDATTGQ
Sbjct: 182 DALQAAKSRGADLVIMDTAGRLHNKVNLMEELRKVKRVIEREIPGAPHEVLLVLDATTGQ 241

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL+Q ++F  VAG TG+++TK+DGTA+GG ++ I     IPV ++GVGEG+ DL PF+ 
Sbjct: 242 NALQQAKLFQEVAGVTGIVLTKLDGTAKGGVVLGIQGEINIPVKWIGVGEGMEDLRPFIP 301

Query: 304 KDFSAVITGCLDYGEEK 320
           +DF++ +       EE+
Sbjct: 302 QDFASALFDQTQDDEEE 318


>gi|260911739|ref|ZP_05918315.1| signal recognition particle-docking protein FtsY [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260634164|gb|EEX52278.1| signal recognition particle-docking protein FtsY [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 317

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 127/311 (40%), Positives = 185/311 (59%), Gaps = 11/311 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
            +  K     L KG   T   +   +T  ++ + ++DD V ++LE++LI SD+GV    K
Sbjct: 5   GFFNKSKKETLDKGLEKTKQSVFSKLTRAVAGKSKVDDEVLDDLEEILITSDVGVDTTLK 64

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----PHVILVVGVN 120
           I+E +  +    K VS   +   + E I  +L   +   N ++       P+VILVVGVN
Sbjct: 65  IIERIEARVARDKYVSTNELNNILKEEITALLSENNTQDNDNWDLPQTGNPYVILVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG KV L A DTFR+AA++Q+ IW +R     V  ++GSD A+
Sbjct: 125 GVGKTTTIGKLAHQFKQAGKKVYLGAADTFRAAAVEQICIWGERVGVPVVKQQMGSDPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A+A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +
Sbjct: 185 VAFDTLSSAKANGADVVIIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPNEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFSAVTNITALAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQL 304

Query: 301 FVAKDFSAVIT 311
           F  + F   + 
Sbjct: 305 FNRQHFVDSLF 315


>gi|184155710|ref|YP_001844050.1| signal recognition particle protein [Lactobacillus fermentum IFO
           3956]
 gi|183227054|dbj|BAG27570.1| signal recognition particle protein [Lactobacillus fermentum IFO
           3956]
          Length = 484

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  +    ++ +  +RE   E+   L+ +D+   V +  V+ +  K  
Sbjct: 10  AFEGLTERLQKAMEKLRRKPKVTEADLRETMREIRLALLEADVNFKVVKDFVKTVREKAA 69

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + +M+   + P N   +H P VI++VG+ G GKTT  GK
Sbjct: 70  GAEVLKGLNPAQQIVKIVNDELTEMMGETATPLNKS-AHIPTVIMMVGLQGAGKTTTAGK 128

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K +      + +  A D +R AAI QL+  A              D   +  +  + A
Sbjct: 129 LAKHLKKEENARPLFIAADVYRPAAITQLQQVAASIDVPVFEMGTDVDPVEIVRQGMEVA 188

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  D +IIDTAGRL  +  LM  + K+  + K      P  +L V+DA TGQNA+   
Sbjct: 189 KEKHNDYVIIDTAGRLQIDEQLMEELAKIKELAK------PDEILLVVDAMTGQNAVNTA 242

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG  RGG  + I      P+ F+G GE +++L+ F     ++ 
Sbjct: 243 QGFDDQLDITGVVLTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMDNLDVFHPDRMASR 302

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 303 ILGMGDM 309


>gi|138894717|ref|YP_001125170.1| Signal recognition particle subunit Ffh/SRP54 [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266230|gb|ABO66425.1| Signal recognition particle, subunit Ffh/SRP54 [Geobacillus
           thermodenitrificans NG80-2]
          Length = 455

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  I    ++ +     +  E+   L+ +D+   V +  ++ +  +  
Sbjct: 11  AFEGLSERLQHVMNRIRGKGKVTEADVKEMMREVRLALLEADVNFKVVKDFIKRVSERAV 70

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V E +  ++              P V+++VG+ G GKTT  GK
Sbjct: 71  GQEVLKSLTPGQQVIKVVKEELTALMGGEQSKIAV-AKKPPTVVMMVGLQGAGKTTTTGK 129

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    + +         ++   +A +A ++A
Sbjct: 130 LANLLRKRHNRKPLLVAADVYRPAAIKQLETLGKQLNMPVFSLGEHANPVEIAKQALERA 189

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D ++IDTAGRLH +  LM  + +M   +K      P  +  V+DA TGQ+A+   
Sbjct: 190 KEEHHDYVLIDTAGRLHVDEALMDELKQMREAVK------PDEIFLVVDAMTGQDAVNVA 243

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+I+TK+DG  RGG  + I      P+ F+G+GE ++ LEPF  +  ++ 
Sbjct: 244 QSFHEQLGITGVILTKLDGDTRGGAALSIRAVTGAPIKFVGMGEKLDALEPFHPERMASR 303

Query: 310 ITGCLD 315
           I G  D
Sbjct: 304 ILGMGD 309


>gi|254227080|ref|ZP_04920636.1| signal recognition particle protein [Vibrio cholerae V51]
 gi|125620406|gb|EAZ48784.1| signal recognition particle protein [Vibrio cholerae V51]
          Length = 372

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V  +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V + +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A+    DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|288957724|ref|YP_003448065.1| signal recognition particle receptor [Azospirillum sp. B510]
 gi|288910032|dbj|BAI71521.1| signal recognition particle receptor [Azospirillum sp. B510]
          Length = 402

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 152/312 (48%), Positives = 211/312 (67%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S ++       W  KL +G + +S KL +GIT I + R+LDD   EELE+LLI +D+G A
Sbjct: 88  SVEEAPPTKKGWFAKLKEGLSKSSSKLTDGITSIFTKRKLDDDALEELEELLITADLGPA 147

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            A K+  EL   R+ K+VS   V   ++  + K++ P+++P   D + +PHV+LVVGVNG
Sbjct: 148 TAAKVTAELARTRFGKEVSPDEVKATLAAEVSKIVSPVARPLVLDPALKPHVVLVVGVNG 207

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+++    G  VMLAAGDTFR+AA+ QLKIW +RT    V  + G+DAA L
Sbjct: 208 TGKTTTIGKLARQFKAEGRSVMLAAGDTFRAAAVSQLKIWGERTGCPVVARDTGADAAGL 267

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A ++A+A+ VDVL+IDTAGRL N + LM  + K++RV+K+LD  APH+ L  LDATT
Sbjct: 268 AYDALERARAEGVDVLLIDTAGRLQNKTGLMEELRKIVRVIKKLDETAPHTTLLTLDATT 327

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA  QVE+F  +    GLI+TK+DG+ARGG L+ +    +IPV+ +GVGEG+ DL PF
Sbjct: 328 GQNAHSQVEIFRDMVNVNGLILTKLDGSARGGVLVSLAEKFRIPVHAIGVGEGVYDLRPF 387

Query: 302 VAKDFSAVITGC 313
            A  F+  + G 
Sbjct: 388 DADAFAKSLMGL 399


>gi|90407352|ref|ZP_01215537.1| Signal recognition particle GTPase [Psychromonas sp. CNPT3]
 gi|90311503|gb|EAS39603.1| Signal recognition particle GTPase [Psychromonas sp. CNPT3]
          Length = 507

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 125/310 (40%), Positives = 194/310 (62%), Gaps = 1/310 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
             +   + L +  +  +    + L +  G+  I   +++D+ + EELE+ LI +D+GV  
Sbjct: 185 KSEDKDDKLGFFARFRQSLTKSRLTIGSGLFSIFKGKQIDEDLFEELEEQLIIADMGVET 244

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             KI+E L      K +     LY +  E + ++L  + KP   D S  P+VIL+VGVNG
Sbjct: 245 TLKIIENLTQHANRKQLKDAEALYSLLKEDLSEILATVEKPLVIDKSKSPYVILMVGVNG 304

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+KK    GL VMLAAGDTFR+AA++QL++W DR +   +  + G+D+A++
Sbjct: 305 VGKTTTIGKLAKKYQQQGLSVMLAAGDTFRAAAVEQLQVWGDRNNIPVIAQQTGADSASV 364

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A   A+A+ VDVLI DTAGRL N   LM  + K++R++++ D  APH ++  +DA T
Sbjct: 365 LFDAMDAARARGVDVLIADTAGRLQNKDHLMDELSKVVRIMRKKDASAPHEIMLTIDAGT 424

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ QV +F+   G TG+ +TK+DGTA+GG +  +    K+P+ ++G GEGI+DL  F
Sbjct: 425 GQNAISQVNLFNKAVGLTGITLTKLDGTAKGGIIFSLADKFKLPIRYIGTGEGIDDLREF 484

Query: 302 VAKDFSAVIT 311
            A++F   + 
Sbjct: 485 NAQEFIDALF 494


>gi|291524526|emb|CBK90113.1| signal recognition particle-docking protein FtsY [Eubacterium
           rectale DSM 17629]
          Length = 313

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 120/309 (38%), Positives = 180/309 (58%), Gaps = 4/309 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           +   +   + ++L  G   T   +  GI  + S    +DD   EELE++LI  D+GV   
Sbjct: 2   EEKEKKPGFFKRLVSGLTKTRDNIVSGIDSLFSGFSHIDDDFYEELEEILIMGDLGVRAT 61

Query: 64  QKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + I+E+L  K   + +         + E I + +    +   + F +   V+LV+GVNGV
Sbjct: 62  ENIIEDLQRKVKEQHIKEPAECKELLIESIKEQMK--VEETAYRFENEKSVVLVIGVNGV 119

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT +GKL+ K+ + G KV++A  DTFR+AA DQLK WA+R   D +    G+D  A+ 
Sbjct: 120 GKTTTVGKLAGKLKEQGKKVVIAGADTFRAAAGDQLKEWANRAGVDMIGGAEGADPGAVV 179

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   ++A+  DVL++DTAGRLHN   LM  +GK+ ++L+   P A    L VLDATTG
Sbjct: 180 YDAVAASKARNADVLLVDTAGRLHNKKNLMNELGKINKILESEYPDAYRETLVVLDATTG 239

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q   F  VA  +G+++TKMDGTA+GG  + I     +PV ++GVGE I+DL+ F 
Sbjct: 240 QNALVQAREFSDVAKISGIVLTKMDGTAKGGIAVAIQSELSVPVKYIGVGETIDDLQKFD 299

Query: 303 AKDFSAVIT 311
           + +F   + 
Sbjct: 300 SDEFVNALF 308


>gi|90580366|ref|ZP_01236173.1| putative signal recognition particle protein [Vibrio angustum S14]
 gi|90438668|gb|EAS63852.1| putative signal recognition particle protein [Vibrio angustum S14]
          Length = 455

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL D        E+   L+ +D+ + V ++ V+ +  +   
Sbjct: 2   FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  +      P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVSKSLTPGQEFIKIVQAELEAVMGEENEGLDLSC-QPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A     DF  S +      +A  A +  +
Sbjct: 121 GKLLKERDSKKVLVVSADVYRPAAIKQLETLAGDVGIDFFPSNVEQKPVEIAKAALEHGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRLH +  +M  I  + + L       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVVIVDTAGRLHVDEEMMDEIKDVHKTLN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPNRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|127511995|ref|YP_001093192.1| signal recognition particle protein [Shewanella loihica PV-4]
 gi|126637290|gb|ABO22933.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           loihica PV-4]
          Length = 457

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEDNIKETLREVRMALLEADVALPVVRAFVNSVKDRAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   +   +   ++  N   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVTKSLSPGQAFIKIVQSELENAMGEANEALNLS-AQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK +       V++ + D +R AAI QL+  A+    +F  S++      +   A   A+
Sbjct: 121 SKFLRERQKKSVLVVSADVYRPAAIKQLETLANEVEVEFFPSDVSQKPIDIVDAAMAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDESMMDEIKALHAAVK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|170724571|ref|YP_001758597.1| signal recognition particle-docking protein FtsY [Shewanella woodyi
           ATCC 51908]
 gi|169809918|gb|ACA84502.1| signal recognition particle-docking protein FtsY [Shewanella woodyi
           ATCC 51908]
          Length = 491

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 128/311 (41%), Positives = 189/311 (60%), Gaps = 1/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
              +       +  +L +G   TS  +  G   +   +++DD + EELE+ L+ +D+GV 
Sbjct: 173 PEPQEKPAKEGFFARLKRGLKRTSENIGSGFIGLFKGKKIDDDLFEELEEQLLIADVGVE 232

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              +++  L  +   K +     LY++  E + K L P S P   + +  P VIL+VGVN
Sbjct: 233 TTTRLISSLTEQASRKQLKDGEALYELLREEMQKTLEPASIPLVPENADGPFVILMVGVN 292

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W  R     V    G+D+A+
Sbjct: 293 GVGKTTTIGKLAKQYQAQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVVAQHTGADSAS 352

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+ VDVLI DTAGRL N S LM  + K++RV+K+ D +APH V+  LDA+
Sbjct: 353 VLFDALQAARARNVDVLIADTAGRLQNKSHLMDELKKVVRVMKKQDENAPHEVMLTLDAS 412

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q E+F    G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  
Sbjct: 413 TGQNAISQAELFKQAVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRT 472

Query: 301 FVAKDFSAVIT 311
           F AKDF   + 
Sbjct: 473 FDAKDFIDALF 483


>gi|77359889|ref|YP_339464.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874800|emb|CAI86021.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 459

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L + + +I    RL +        E+    + +D+ + V +  V+++  +   
Sbjct: 2   FENLQERLGKTLKNISGRGRLTEENIKDTLREVRMAFLEADVALPVVRDFVKQVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V E + K +   ++  + + +  P V+++ G+ G GKTT + KL
Sbjct: 62  VEVTKSLSPGQVFVKIVREELEKAMGEANEELSLN-AQPPAVVMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K + + + D +R AAI QL+  A     DF  S+I      +A  A   A+
Sbjct: 121 AKFLKERKKKSVLVVSADVYRPAAIKQLETLAAEVGVDFFPSDISQKPVDIATAAISHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+++DTAGRLH +S +M  I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFIDVVLVDTAGRLHVDSDMMDEIKNLHKAIN------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG ARGG  + I      P+ F+GVGE I+ LEPF     ++ I
Sbjct: 235 AFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERIDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|238923874|ref|YP_002937390.1| cell division protein FtsY [Eubacterium rectale ATCC 33656]
 gi|238875549|gb|ACR75256.1| cell division protein FtsY [Eubacterium rectale ATCC 33656]
          Length = 313

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 120/309 (38%), Positives = 180/309 (58%), Gaps = 4/309 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           +   +   + ++L  G   T   +  GI  + S    +DD   EELE++LI  D+GV   
Sbjct: 2   EEKEKKPGFFKRLVSGLTKTRDNIVSGIDSLFSGFSHIDDDFYEELEEILIMGDLGVRAT 61

Query: 64  QKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + I+E+L  K   + +         + E I + +    +   + F +   V+LV+GVNGV
Sbjct: 62  ESIIEDLQRKVKEQHIKEPAECKELLIESIKEQMK--VEETAYRFENEKSVVLVIGVNGV 119

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT +GKL+ K+ + G KV++A  DTFR+AA DQLK WA+R   D +    G+D  A+ 
Sbjct: 120 GKTTTVGKLAGKLKEQGKKVVIAGADTFRAAAGDQLKEWANRAGVDMIGGAEGADPGAVV 179

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   ++A+  DVL++DTAGRLHN   LM  +GK+ ++L+   P A    L VLDATTG
Sbjct: 180 YDAVAASKARNADVLLVDTAGRLHNKKNLMNELGKINKILESEYPDAYRETLVVLDATTG 239

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q   F  VA  +G+++TKMDGTA+GG  + I     +PV ++GVGE I+DL+ F 
Sbjct: 240 QNALVQAREFSDVAKISGIVLTKMDGTAKGGIAVAIQSELSVPVKYIGVGETIDDLQKFD 299

Query: 303 AKDFSAVIT 311
           + +F   + 
Sbjct: 300 SDEFVNALF 308


>gi|315652047|ref|ZP_07905048.1| cell division protein FtsY [Eubacterium saburreum DSM 3986]
 gi|315485694|gb|EFU76075.1| cell division protein FtsY [Eubacterium saburreum DSM 3986]
          Length = 309

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 116/308 (37%), Positives = 181/308 (58%), Gaps = 4/308 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  +   +  +L +G   T   +  GI ++      +D+   EELE+ LI  DIG+  + 
Sbjct: 1   MEEKKKGFFSRLVEGLTKTRNAVVSGIENVFLGYEVIDEDFYEELEETLIMGDIGIRAST 60

Query: 65  KIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            I+EEL  +   + + S  +    + + I + +        ++F +R  V+ V+GVNGVG
Sbjct: 61  DIIEELRKRVKEERLNSPAQCREVLIDTIKRKMD--LGENAYEFENRKSVVFVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ ++ + G KV++ A DTFR+AAI+QL+ W  R   D +    GSD  A+ +
Sbjct: 119 KTTSVGKLASQLKNDGKKVLVVAADTFRAAAIEQLEEWTKRAGVDIIAQNEGSDPGAVVF 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A K A+A+  DV+I+DTAGRLHN   LM  + K+ ++++R  P A    L VLD TTGQ
Sbjct: 179 DACKAAKARNTDVMIVDTAGRLHNKKNLMEELKKINKIIEREYPDAYRETLVVLDGTTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F+  A  TG+I+TK+DG+A+GG  + I     IPV ++GVGE I+DL+ F +
Sbjct: 239 NALEQARAFNEAANITGIILTKLDGSAKGGIAVAIQAELSIPVKYIGVGEKIDDLQKFNS 298

Query: 304 KDFSAVIT 311
           K+F   + 
Sbjct: 299 KEFVDALF 306


>gi|110637071|ref|YP_677278.1| signal recognition particle-docking protein FtsY [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279752|gb|ABG57938.1| signal recognition particle-docking protein FtsY [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 320

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 179/312 (57%), Gaps = 12/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG   T       ++  ++   ++DD V + LE++L+ SD+G+    K
Sbjct: 5   SFFSKEKKETLNKGLEKTKTSFFSKLSKAVLGKTQVDDEVLDNLEEVLVTSDVGIETTLK 64

Query: 66  IVEELLTKR-YAKDVSVQRVLYDVSELIHKMLM----PLSKPFNWDFSHR-PHVILVVGV 119
           I+  +  +    K VS   +   + E I  +L+    P SK F    +   P+VI+VVGV
Sbjct: 65  IIGRIQDRASKDKYVSTSELNTILKEEIAALLVGDTVPDSKEFEIPETGGLPYVIMVVGV 124

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+      G KV+L A DTFR+AA++QL++W  R     +   + +D A
Sbjct: 125 NGVGKTTTIGKLASHYHKNGKKVVLGAADTFRAAAVEQLELWGKRVGVPVISHGMNTDPA 184

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A++A KQA   K DV+IIDTAGRLH    LM  + K+ RV+++  P APH V+ VLD 
Sbjct: 185 AVAFDAVKQAVDMKADVVIIDTAGRLHTKVNLMNELSKIKRVIQKFIPEAPHDVMLVLDG 244

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q   F      T L +TK+DGTA+GG +I I    +IPV ++GVGE + DL+
Sbjct: 245 STGQNAVIQAREFTKATEVTSLAITKLDGTAKGGVVIGISDQFQIPVRYIGVGEKMEDLQ 304

Query: 300 PFVAKDFSAVIT 311
            F   +F   + 
Sbjct: 305 VFNKHEFVDSLF 316


>gi|157963791|ref|YP_001503825.1| signal recognition particle-docking protein FtsY [Shewanella
           pealeana ATCC 700345]
 gi|157848791|gb|ABV89290.1| signal recognition particle-docking protein FtsY [Shewanella
           pealeana ATCC 700345]
          Length = 643

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 190/303 (62%), Gaps = 1/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +L +G   TS  +  G   + S +++DD + EELE+ L+ +D+GV    ++++ 
Sbjct: 331 KEGLFARLKRGLKRTSESIGSGFIGLFSGKKIDDDLFEELEEQLLIADVGVETTTRLIKN 390

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   K +     LYD+  E + K L P+S P   + +  P VIL+VGVNGVGKTT I
Sbjct: 391 LTEQASRKQLKDGEALYDLLREEMQKTLDPVSVPLIPENADGPFVILMVGVNGVGKTTTI 450

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K+  + G  VMLAAGDTFR+AA++QL++W  R     +    G+D+A++ ++A + 
Sbjct: 451 GKLAKQYQEQGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVIAQHTGADSASVLFDALQA 510

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ VDVLI DTAGRL N + LM  + K++RV+K+ D  APH V+  LDA+TGQNA+ Q
Sbjct: 511 ARARNVDVLIADTAGRLQNKAHLMDELKKVVRVMKKQDEAAPHEVMLTLDASTGQNAISQ 570

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  F AKDF  
Sbjct: 571 AQLFQEAVGVTGITISKLDGTAKGGVIFAIADKFGIPIRHIGVGEQIDDLRTFDAKDFIE 630

Query: 309 VIT 311
            + 
Sbjct: 631 ALF 633


>gi|261491854|ref|ZP_05988433.1| signal recognition particle protein [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494675|ref|ZP_05991155.1| signal recognition particle protein [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309640|gb|EEY10863.1| signal recognition particle protein [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261312509|gb|EEY13633.1| signal recognition particle protein [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 470

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V +  + ++  +   
Sbjct: 9   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKVKERALG 68

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  L  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 69  VEVNKSLTPGQEFLKIVQSELETAMGEANEELNL-AAQPPAVILMAGLQGAGKTTSVGKL 127

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E      A+A  A K A+
Sbjct: 128 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAETLKVDFFPTETSQKPVAIAEAALKHAK 187

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    +
Sbjct: 188 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHAVLN------PIETLFTVDAMTGQDAANTAK 241

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 242 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 301

Query: 311 TGCLD 315
            G  D
Sbjct: 302 LGMGD 306


>gi|209965480|ref|YP_002298395.1| cell division ABC transporter, periplasmic substrate-binding
           protein FtsY [Rhodospirillum centenum SW]
 gi|209958946|gb|ACI99582.1| cell division ABC transporter, periplasmic substrate-binding
           protein FtsY [Rhodospirillum centenum SW]
          Length = 402

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 143/306 (46%), Positives = 207/306 (67%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
            E   W  +L  G + ++ +L EGI+ I + R+LDD   EELE+LLIR+D+G   A ++ 
Sbjct: 95  PERKGWFARLKDGLSKSTSRLTEGISGIFTKRKLDDEALEELEELLIRADLGPTTAARMT 154

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             L   R+ K+VS Q V   ++  + K++ P+++P   +   RPHVIL+VGVNG GKTT 
Sbjct: 155 AGLARTRFGKEVSPQEVREYLAGEVQKLVEPVARPLVIEPERRPHVILLVGVNGTGKTTT 214

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL++++ + G  V +AAGDTFR+AA+ QLK+W +RT    V  + G+DAA LA+EA +
Sbjct: 215 IGKLARQLREEGKTVWMAAGDTFRAAAVSQLKVWGERTGCPVVAKDTGADAAGLAFEALE 274

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+A   DVL+IDTAGRL N + LM  + K++RV+K+LDP APH+ L  LDATTGQNA  
Sbjct: 275 KARAAGADVLLIDTAGRLQNKTGLMEELRKIVRVIKKLDPEAPHTTLLTLDATTGQNAHS 334

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QVE+F  +    GL++TK+DG+ARGG L+ +     +PV+ +GVGEG+ DL PF A+ F+
Sbjct: 335 QVEVFKEMVAINGLVLTKLDGSARGGVLVALAEKFGLPVHAIGVGEGVYDLRPFDARQFA 394

Query: 308 AVITGC 313
             + G 
Sbjct: 395 RALVGL 400


>gi|149911445|ref|ZP_01900062.1| signal recognition particle protein [Moritella sp. PE36]
 gi|149805476|gb|EDM65483.1| signal recognition particle protein [Moritella sp. PE36]
          Length = 464

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL +        E+   L+ +D+ + V ++ ++ +      
Sbjct: 2   FENLTDRLSATLKNVSGRGRLTEDNVKDTLREVRMALLEADVALPVVREFIKNVKENALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DVS      Q  +  V   +   +   ++  N   +  P V+++ G+ G GKTT + KL
Sbjct: 62  QDVSKSLNPGQAFIKIVQAELESAMGNANETLNL-AAQPPAVLMMAGLQGAGKTTTVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           S  +       V++ + D +R AAI QL+  A     +F  S I      +A  A + A+
Sbjct: 121 SLFLKEREKKSVLVVSTDVYRPAAIKQLETLAAEVDVEFFPSNIEQKPVDIANAAIEYAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              +DV+I+DTAGRLH ++ +M  I  +   +       P   L V+DA TGQ+A     
Sbjct: 181 KSFIDVVIVDTAGRLHVDTDMMQEIQDLHAAIN------PVETLFVVDAMTGQDAANTAA 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ F+G+GE I+ LEPF  +  ++ I
Sbjct: 235 AFNETLPLTGIILTKADGDARGGAALSIRHITGKPIKFIGMGEKIDALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|227515698|ref|ZP_03945747.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus fermentum
           ATCC 14931]
 gi|227085946|gb|EEI21258.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus fermentum
           ATCC 14931]
          Length = 476

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  +    ++ +  +RE   E+   L+ +D+   V +  V+ +  K  
Sbjct: 2   AFEGLTERLQKAMEKLRRKPKVTEADLRETMREIRLALLEADVNFKVVKDFVKTVREKAA 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + +M+   + P N   +H P VI++VG+ G GKTT  GK
Sbjct: 62  GAEVLKGLNPAQQIVKIVNDELTEMMGETATPLNKS-AHIPTVIMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K++      + +  A D +R AAI QL+  A              D   +  +  + A
Sbjct: 121 LAKRLKKEENARPLFIAADVYRPAAITQLQQVAASIDVPVFEMGTDVDPVEIVRQGMEVA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  D +IIDTAGRL  +  LM  + K+  + K      P  +L V+DA TGQNA+   
Sbjct: 181 KEKHNDYVIIDTAGRLQIDEQLMEELAKIKELAK------PDEILLVVDAMTGQNAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG  RGG  + I      P+ F+G GE +++L+ F     ++ 
Sbjct: 235 QGFDDQLDITGVVLTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMDNLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|56419731|ref|YP_147049.1| signal recognition particle GTPase [Geobacillus kaustophilus
           HTA426]
 gi|297530628|ref|YP_003671903.1| signal recognition particle protein [Geobacillus sp. C56-T3]
 gi|319766210|ref|YP_004131711.1| signal recognition particle protein [Geobacillus sp. Y412MC52]
 gi|56379573|dbj|BAD75481.1| signal recognition particle GTPase [Geobacillus kaustophilus
           HTA426]
 gi|297253880|gb|ADI27326.1| signal recognition particle protein [Geobacillus sp. C56-T3]
 gi|317111076|gb|ADU93568.1| signal recognition particle protein [Geobacillus sp. Y412MC52]
          Length = 446

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L++ +  I    ++ +     +  E+   L+ +D+   V +  + ++  +  
Sbjct: 2   AFEGLSERLQQVMNRIRGKGKVTEADVKEMMREVRLALLEADVNFKVVKDFIRQVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V E +  ++              P V+++VG+ G GKTT  GK
Sbjct: 62  GQEVMKSLTPGQQVIKIVKEELTALMGGEQSQIAV-AKKPPTVVMMVGLQGAGKTTTTGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +           ++   +A +A ++A
Sbjct: 121 LANLLRKRHNRKPLLVAADVYRPAAIKQLETLGKQLDMPVFSLGEHANPVEIAKQALERA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D ++IDTAGRLH +  LM  + +M   +K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEEHYDYVLIDTAGRLHIDEALMDELKQMKEAVK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+I+TK+DG  RGG  + I      P+ F G+GE ++ LEPF  +  ++ 
Sbjct: 235 QSFHEQLGITGVILTKLDGDTRGGAALSIRAVTGAPIKFAGMGEKLDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|331002414|ref|ZP_08325932.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330410230|gb|EGG89664.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 309

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 119/307 (38%), Positives = 181/307 (58%), Gaps = 2/307 (0%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  +   +  +L +G   T   +  GI ++      +D+   EELE+ LI  DIG+  + 
Sbjct: 1   MEEKKKGFFSRLVEGLTKTRNAVVSGIENVFLGYDVIDEDFYEELEETLIMGDIGIRAST 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            I+EEL  +   + ++      DV     K  M L +   ++F +R  V+ V+GVNGVGK
Sbjct: 61  DIIEELRKRVKDEHLTSPSQCKDVLIETIKQRMDLGENA-YEFENRKSVVFVIGVNGVGK 119

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT +GKL+ ++ + G KV++ A DTFR+AAI+QL+ W  R   D +    GSD  A+ ++
Sbjct: 120 TTSVGKLASQLKNDGKKVLVVAADTFRAAAIEQLEEWTKRAGVDIIAQNEGSDPGAVVFD 179

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K A+A+  DV+I+DTAGRLHN   LM  + K+ ++++R  P A    L VLD TTGQN
Sbjct: 180 ACKAAKARNTDVMIVDTAGRLHNKKNLMEELKKINKIIEREYPDAYRETLVVLDGTTGQN 239

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q  +F+  A  TG+I+TK+DG+A+GG  + I     IPV ++GVGE I+DL  F +K
Sbjct: 240 ALEQARVFNEAANITGIILTKLDGSAKGGIAVAIQAELSIPVKYVGVGEKIDDLHKFNSK 299

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 300 EFVDALF 306


>gi|171320171|ref|ZP_02909233.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria MEX-5]
 gi|171094585|gb|EDT39637.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria MEX-5]
          Length = 386

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 127/308 (41%), Positives = 184/308 (59%), Gaps = 7/308 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   +
Sbjct: 84  QDASAKKSWLVRLKTGLAKT----GSSITGVFVNTKIDEDLYEELEAALLMSDAGVDATE 139

Query: 65  KIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++  L  K R  +    Q+V   + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 140 YLLGALREKVRTGRLTDPQQVKSALHDLLVELLKPLEKSLMLGRAQ-PLVMMITGVNGAG 198

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 199 KTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV-QQESGDPAAVIF 257

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 258 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQ 317

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 318 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSA 377

Query: 304 KDFSAVIT 311
            +F+  + 
Sbjct: 378 VEFADALL 385


>gi|239908107|ref|YP_002954848.1| signal recognition particle protein [Desulfovibrio magneticus RS-1]
 gi|239797973|dbj|BAH76962.1| signal recognition particle protein [Desulfovibrio magneticus RS-1]
          Length = 505

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L++    I    RL +        E+   L+ +D+   V +  VE +  +   
Sbjct: 2   FDSLTDRLEDVFRKIRGQARLTEENVQTALREVRLALLEADVNFKVVKDFVERVRERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V E + ++L   +   + D S  P VI+VVG+ G GKTT   KL
Sbjct: 62  QDVLKSLNPGQQVVKIVHEELIEILGGQAT--DLDLSGSPAVIMVVGLQGSGKTTTCAKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + K+      K  L   D +R AAIDQL   A +   +   S    +   +   A  +A+
Sbjct: 120 ALKLRREFKRKPYLVPADVYRPAAIDQLHKLASQLDIEAYPSTPDQNPVDICAAALAEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGRLH +  LM  +  +          AP  +L V DA TGQ+A+    
Sbjct: 180 RTGHDVVLLDTAGRLHIDEALMDELAAIKAGC------APGEILFVADAMTGQDAVTVAA 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG ARGG  + +      P+  +G GE ++DLE F     ++ I
Sbjct: 234 AFNERLDITGVVLTKMDGDARGGAALSVRQVTGKPIKLVGTGEKVSDLELFYPDRAASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|218778639|ref|YP_002429957.1| signal recognition particle-docking protein FtsY [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760023|gb|ACL02489.1| signal recognition particle-docking protein FtsY [Desulfatibacillum
           alkenivorans AK-01]
          Length = 359

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 117/305 (38%), Positives = 175/305 (57%), Gaps = 3/305 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +      +L    A T   L   I D   +   L +   EELE+ LI +D+GV     ++
Sbjct: 56  QEAGLGARLKDKLAKTRDVLNTPIEDFFITKTELTEDSLEELEETLITADMGVNTVMDLM 115

Query: 68  EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           E +  K   K ++  + L   +++ +  ++ P+ +      + +P VI+VVGVNGVGKTT
Sbjct: 116 EPVAEKVNKKQITNSKELRAALTDAMLDLIKPVHENKELP-NKKPLVIMVVGVNGVGKTT 174

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+      G KVML A DTFR+AA++QL+IWA+R     V     SD AA+AY+  
Sbjct: 175 TIGKLAANFKKQGKKVMLVAADTFRAAAVEQLEIWAERAGVQIVRHRDNSDPAAVAYDGV 234

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+ +DV+IIDTAGRLH    LM  + K+ R   +  P +PH    V+DA TGQNA+
Sbjct: 235 AAAEARGMDVVIIDTAGRLHTQVNLMEELKKIRRSCHKSLPGSPHETWLVIDANTGQNAV 294

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++FH   G TG+I+TK+DGTA+GG ++ I     +P+ ++G+GE   DL  F A++F
Sbjct: 295 SQAKLFHEAIGVTGMILTKVDGTAKGGIVVSICHDMDVPIRYIGLGEKAEDLREFEAREF 354

Query: 307 SAVIT 311
              + 
Sbjct: 355 IKALF 359


>gi|290968347|ref|ZP_06559888.1| signal recognition particle-docking protein FtsY [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781622|gb|EFD94209.1| signal recognition particle-docking protein FtsY [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 313

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 123/303 (40%), Positives = 183/303 (60%), Gaps = 4/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL KG   T   L + I  ++    ++DD + E+LE +L+  D+G+   + I+ +
Sbjct: 1   MGFFAKLKKGLEKTKTSLIQNIETVVCGYAKIDDDMYEDLEAVLLTGDVGLETTEYILRQ 60

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           + T    K++   + +   V   I K+L     P          VI +VGVNGVGKTT I
Sbjct: 61  IRTGVKTKEIQEGKDVVPYVQRCITKLLEENDTPVPT--REGTEVIFIVGVNGVGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G  V++AAGDTFR+AA +QL IWADR     +  + G+DAAA+ ++A   
Sbjct: 119 GKLANYYRQQGKSVLVAAGDTFRAAASEQLTIWADRIGVPIIKHQEGADAAAVIFDATAS 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +D++++DTAGRLH  + LM  + KM RV  R    APH  L VLDATTGQNA+ Q
Sbjct: 179 AKARGIDIVLVDTAGRLHTKANLMEELRKMARVAGRNIAGAPHETLLVLDATTGQNAVSQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F      TG+++TK+DGTA+GG ++ +  T  +PV ++GVGEGI DL+PF A DF+A
Sbjct: 239 AKLFGETVPLTGVVLTKLDGTAKGGIILSVKRTLGVPVRWVGVGEGIEDLQPFSAVDFAA 298

Query: 309 VIT 311
            + 
Sbjct: 299 ALF 301


>gi|258623026|ref|ZP_05718039.1| Signal recognition particle GTPase [Vibrio mimicus VM573]
 gi|258623816|ref|ZP_05718773.1| Signal recognition particle GTPase [Vibrio mimicus VM603]
 gi|258583939|gb|EEW08731.1| Signal recognition particle GTPase [Vibrio mimicus VM603]
 gi|258584639|gb|EEW09375.1| Signal recognition particle GTPase [Vibrio mimicus VM573]
          Length = 461

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V  +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V + +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A+    DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +MA I  + + +      AP   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAI------APVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGIILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|325053853|pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
           (Srp) In Complex With Its Receptor(Sr)
 gi|325053855|pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
           (Srp) In Complex With Its Receptor(Sr)
          Length = 433

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|165977179|ref|YP_001652772.1| signal recognition particle GTPase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165877280|gb|ABY70328.1| signal recognition particle GTPase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 463

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  L  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVNKSLTPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +M  I ++ RVL       P   L  +DA TGQ+A    +
Sbjct: 181 LNFFDVLIVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+ K+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILAKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|296124401|ref|YP_003632179.1| signal recognition particle-docking protein FtsY [Planctomyces
           limnophilus DSM 3776]
 gi|296016741|gb|ADG69980.1| signal recognition particle-docking protein FtsY [Planctomyces
           limnophilus DSM 3776]
          Length = 313

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 130/312 (41%), Positives = 178/312 (57%), Gaps = 12/312 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL  G   TS  L+  I D+  S  +  +   E+ E  LI++D+GVA   +IV +
Sbjct: 1   MGFFDKLKAGLKKTSQLLRTDIRDLFKSGEILSEKHLEQFEARLIQTDMGVAATTRIVSD 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK----------PFNWDFSHRPHVILVVGV 119
           L  +   + + V  +   V   +  +L   S           P N+  S RP VILV GV
Sbjct: 61  LRQEHLGRTMKVDELWATVRATVKSILKGTSTTTYDPEQPLSPLNFSES-RPTVILVAGV 119

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT I KL++ ++  G  V+LAAGDTFR+AA++QL +W+ R   D V    G+D A
Sbjct: 120 NGTGKTTTIAKLARLLTSQGKTVLLAAGDTFRAAAVEQLTLWSQRLGCDIVTKPAGTDPA 179

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A+   + A    VDVLIIDTAGRLHN   LM  + K+ RV+ +  P APH  L V+DA
Sbjct: 180 AVAFAGCEAAVKAGVDVLIIDTAGRLHNQQNLMQELEKIRRVIAKQIPDAPHESLLVIDA 239

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN L Q + F     TTGLI++K+DGTARGG  + I     IPV ++GVGE I+DLE
Sbjct: 240 TTGQNGLNQAQAFSKAVSTTGLILSKLDGTARGGVAVAIRQQMGIPVKYVGVGEAIDDLE 299

Query: 300 PFVAKDFSAVIT 311
            F    F+  + 
Sbjct: 300 VFDPDQFAEALF 311


>gi|311693648|gb|ADP96521.1| signal recognition particle protein [marine bacterium HP15]
          Length = 463

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  I    RL D        E+   L+ +D+ + V +  VE +  +   
Sbjct: 2   FENLQDRLSGSLRKISGQARLTDDNIKDTLREVRMALLEADVALPVVKDFVEGVRKRAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + + +++   ++  N +    P V+++ G+ G GKTT + KL
Sbjct: 62  QEVQRSLTPGQVFVKVVQQELERVMGEGNESLNLNV-QPPAVVMMAGLQGAGKTTTVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           S+ +       V++ + D +R AAI QL+  A     +F  S    D   +A  A   A+
Sbjct: 121 SRFLKERQKKSVLVVSADVYRPAAIRQLETLAGEVGVEFFPSTADQDPVDIAEGAIAAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  IG++ + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKHIDVVILDTAGRLHVDEQMMGEIGRLHKAVN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVVLTKTDGDARGGAALSVRHITGKPIKFLGVGEKSDALEPFYPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|15640582|ref|NP_230211.1| signal recognition particle protein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|229509156|ref|ZP_04398641.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae B33]
 gi|229519634|ref|ZP_04409077.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae RC9]
 gi|229606151|ref|YP_002876799.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           MJ-1236]
 gi|254850797|ref|ZP_05240147.1| signal recognition particle protein [Vibrio cholerae MO10]
 gi|255744215|ref|ZP_05418168.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholera CIRS
           101]
 gi|262147229|ref|ZP_06028031.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           INDRE 91/1]
 gi|9654990|gb|AAF93728.1| signal recognition particle protein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|229344323|gb|EEO09298.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae RC9]
 gi|229353728|gb|EEO18664.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae B33]
 gi|229368806|gb|ACQ59229.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           MJ-1236]
 gi|254846502|gb|EET24916.1| signal recognition particle protein [Vibrio cholerae MO10]
 gi|255738155|gb|EET93547.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholera CIRS
           101]
 gi|262031326|gb|EEY49938.1| signal recognition particle subunit Ffh SRP54 [Vibrio cholerae
           INDRE 91/1]
          Length = 461

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V  +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V + +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A+    DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAADTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|253722851|pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
          Length = 295

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 123/294 (41%), Positives = 185/294 (62%), Gaps = 2/294 (0%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           +    T   L  G   +   +++DD + EELE+ L+ +D+GV   +KI+  L      K 
Sbjct: 1   RSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQ 60

Query: 79  VSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +     LY  + E + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL+++   
Sbjct: 61  LRDAEALYGLLKEEMGEILAKVDEPLNVE-GKAPFVILMVGVNGVGKTTTIGKLARQFEQ 119

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A+ +DVL
Sbjct: 120 QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVL 179

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           I DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++FH   G
Sbjct: 180 IADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVG 239

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF   + 
Sbjct: 240 LTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 293


>gi|229825031|ref|ZP_04451100.1| hypothetical protein GCWU000182_00381 [Abiotrophia defectiva ATCC
           49176]
 gi|229790778|gb|EEP26892.1| hypothetical protein GCWU000182_00381 [Abiotrophia defectiva ATCC
           49176]
          Length = 304

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 114/303 (37%), Positives = 180/303 (59%), Gaps = 4/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL +G + T   +   +++I +   + DD   EELE+ LI +D+G++    ++E 
Sbjct: 1   MGFFSKLAEGLSKTRNNIMNSVSNIFTGHDIIDDDFYEELEETLIMADLGISTTTSVIEN 60

Query: 70  LLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K     +         + + + + +    KP  +DF ++  V+L++GVNGVGKTT +
Sbjct: 61  LKAKVKELKIKDPADCKKHLMDSLKEQMQ--VKPDAYDFENKKSVVLMIGVNGVGKTTSV 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ ++ ++G KV++AA DTFR+ AI+QL  WA R+  + +  + GSD AA+ ++A   
Sbjct: 119 GKLASQLKNSGKKVLVAAADTFRAGAIEQLTEWARRSDVELIAQKEGSDPAAVVFDAVNA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ VDVLI DTAGRLHN   LM  + K+ R++ +  P A    L V+D TTGQNA  Q
Sbjct: 179 AKARNVDVLICDTAGRLHNKKNLMDELNKIYRIIGKEFPEAAIETLVVVDGTTGQNAKEQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F   A   G+++TK+DGTA+GG  I I     IPV ++G+GE I+DL+ F A+ F  
Sbjct: 239 ARQFSEAAPVNGIVLTKLDGTAKGGIAIAIESELSIPVKYIGIGEQIDDLQKFDAEQFVE 298

Query: 309 VIT 311
            + 
Sbjct: 299 ALF 301


>gi|222151068|ref|YP_002560222.1| signal recognition particle GTPase FtsY [Macrococcus caseolyticus
           JCSC5402]
 gi|222120191|dbj|BAH17526.1| signal recognition particle GTPase FtsY [Macrococcus caseolyticus
           JCSC5402]
          Length = 416

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 120/308 (38%), Positives = 183/308 (59%), Gaps = 6/308 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K  +G   +    +  + D+++  R +D+   E LE++LI++D+G   
Sbjct: 82  EELEAQQIG--AKFREGLEKSRENFQNKLNDLLAMYRTVDEDFFEALEEMLIQADVGFNT 139

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNW--DFSHRPHVILVVGV 119
              +VE L  +   ++++    L +V  E I ++                   VIL+VGV
Sbjct: 140 VMDLVESLRMEAKRRNITETADLREVIVEKIVEIYEQEDDKLQEMNIQEDGLTVILMVGV 199

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVMLAAGDTFR+ AI+QL++W DR   + +    GSD A
Sbjct: 200 NGVGKTTTIGKLAHRYKGQGKKVMLAAGDTFRAGAIEQLQVWGDRVGVEVIKQSEGSDPA 259

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A   A+ +  D+LI DTAGRL N + LM  + K+ +VL R  P APH VL  LDA
Sbjct: 260 AVMYDAIGAAKNRGADILICDTAGRLQNKANLMTELEKVKKVLSRAVPGAPHEVLLALDA 319

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q + F  V   +G+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL+
Sbjct: 320 TTGQNALVQAKAFKEVTDVSGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGEKLDDLQ 379

Query: 300 PFVAKDFS 307
           PF A+ + 
Sbjct: 380 PFDAESYV 387


>gi|228470068|ref|ZP_04054977.1| signal recognition particle-docking protein FtsY [Porphyromonas
           uenonis 60-3]
 gi|228308206|gb|EEK17061.1| signal recognition particle-docking protein FtsY [Porphyromonas
           uenonis 60-3]
          Length = 319

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 117/302 (38%), Positives = 182/302 (60%), Gaps = 6/302 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L  G   +   + + +T  ++ + ++DD + ++LED+L+ SD+GV    KI++ +  +  
Sbjct: 15  LDTGLEKSKTSMVDKLTRAVAGKSKVDDAILDDLEDILVTSDVGVDTTLKIIKRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K V    +   + + +  +L        + F       P+VI+VVGVNGVGKTT IGK
Sbjct: 75  RDKYVGTSELKSILRDEVAALLAENGTTDGESFTLPAEAHPYVIMVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    G +++L A DTFR+AAI+QL+IW +R     +  ++GSD A++A++  + A 
Sbjct: 135 LAYQFKQQGKRIVLGAADTFRAAAIEQLEIWGERVGVPVIKQQMGSDPASVAFDTLQSAV 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DV+IIDTAGRLHN   LM  + K+ RV+ ++ P APH VL VLD +TGQNA  Q +
Sbjct: 195 AQNADVVIIDTAGRLHNQVSLMNELSKIKRVMAKVVPDAPHEVLLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A    + L +TK+DGTA+GG +I I    K+PV ++G+GE I DL+ F  ++F   I
Sbjct: 255 QFTAATDVSALAITKLDGTAKGGVVIGISDQFKVPVKYIGLGEKIEDLQVFRKREFVDSI 314

Query: 311 TG 312
            G
Sbjct: 315 FG 316


>gi|150007588|ref|YP_001302331.1| recognition particle-docking protein FtsY [Parabacteroides
           distasonis ATCC 8503]
 gi|255013883|ref|ZP_05286009.1| recognition particle-docking protein FtsY [Bacteroides sp. 2_1_7]
 gi|256839775|ref|ZP_05545284.1| signal recognition particle-docking protein FtsY [Parabacteroides
           sp. D13]
 gi|262381913|ref|ZP_06075051.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           2_1_33B]
 gi|298375534|ref|ZP_06985491.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           3_1_19]
 gi|301310446|ref|ZP_07216385.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           20_3]
 gi|149936012|gb|ABR42709.1| recognition particle-docking protein FtsY [Parabacteroides
           distasonis ATCC 8503]
 gi|256738705|gb|EEU52030.1| signal recognition particle-docking protein FtsY [Parabacteroides
           sp. D13]
 gi|262297090|gb|EEY85020.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           2_1_33B]
 gi|298268034|gb|EFI09690.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           3_1_19]
 gi|300832020|gb|EFK62651.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           20_3]
          Length = 317

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 130/313 (41%), Positives = 187/313 (59%), Gaps = 13/313 (4%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   IT  I    ++DD V + LE++LI SD+GV    K
Sbjct: 5   SFFSKDKKETLDKGLSKTKESVFSKITKAIAGKSKVDDDVLDNLEEVLITSDVGVDTTLK 64

Query: 66  IVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGV 119
           I++ +  KR A+D  V+ Q +   + + I  +L   +      F      +P+VI+VVGV
Sbjct: 65  IIDRI-EKRVARDKYVTTQELTTLLRDEIASLLTENNTEDAEGFALPEGKKPYVIMVVGV 123

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +   AG KV L A DTFR+AA++QL IW++R     V   +GSD A
Sbjct: 124 NGVGKTTTIGKLAYQFKKAGKKVYLGAADTFRAAAVEQLVIWSERVGVPIVKQNMGSDPA 183

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++    A+A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH +L VLD 
Sbjct: 184 SVAFDTLSSAKANDADVVIIDTAGRLHNKINLMNELTKIKNVMKKVIPDAPHEILLVLDG 243

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA  Q + F A      L +TK+DGTA+GG +I I    +IPV ++G+GEG+ DL+
Sbjct: 244 STGQNAFEQAKQFTAATEVNALAVTKLDGTAKGGVVIGISDHFRIPVKYIGLGEGMEDLQ 303

Query: 300 PFVAKDFSAVITG 312
            F  ++F   + G
Sbjct: 304 VFRKREFVNSLFG 316


>gi|302343403|ref|YP_003807932.1| signal recognition particle-docking protein FtsY [Desulfarculus
           baarsii DSM 2075]
 gi|301640016|gb|ADK85338.1| signal recognition particle-docking protein FtsY [Desulfarculus
           baarsii DSM 2075]
          Length = 361

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 130/313 (41%), Positives = 190/313 (60%), Gaps = 3/313 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S+    +     + +L +    T  K+   I  I   R++DD V +ELE++L+ +D+GV
Sbjct: 51  VSDPAPEARKKGLLARLAERLGKTREKISGSIDKIAIGRKIDDEVLDELEEVLVTADLGV 110

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               +++  L  K   K+++    L   +   I ++    + P     + +PHVI+VVGV
Sbjct: 111 KTTAELIGGLRGKVRRKELADAEALKGALRAGIEEIFGRTAAP--PAMTAKPHVIMVVGV 168

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+  +S  G KVML A DTFR+AA +QL+IWA R     V  + G+D +
Sbjct: 169 NGVGKTTTIGKLASHLSAQGKKVMLGAADTFRAAAAEQLEIWAQRVGCPIVRQKEGADPS 228

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+AY+  + A  + VDV IIDTAGRLH    LM  + K+ RV+ +    APH V+ VLDA
Sbjct: 229 AVAYDTVEAAVGRGVDVAIIDTAGRLHTKVNLMDELRKIHRVIGKKMDGAPHEVILVLDA 288

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q +MF+     TGLI+TK+DGTA+GG  + I    K+P+ ++GVGE ++DL 
Sbjct: 289 TTGQNALNQAKMFNEAVQLTGLILTKLDGTAKGGVAVAIAGELKLPICYVGVGEHLDDLR 348

Query: 300 PFVAKDFSAVITG 312
           PF A++F+  I G
Sbjct: 349 PFDAREFAEAIFG 361


>gi|260886927|ref|ZP_05898190.1| signal recognition particle protein [Selenomonas sputigena ATCC
           35185]
 gi|330839284|ref|YP_004413864.1| signal recognition particle protein [Selenomonas sputigena ATCC
           35185]
 gi|260862989|gb|EEX77489.1| signal recognition particle protein [Selenomonas sputigena ATCC
           35185]
 gi|329747048|gb|AEC00405.1| signal recognition particle protein [Selenomonas sputigena ATCC
           35185]
          Length = 456

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 155/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L++    +    +L +D V E   E+   L+ +D+   V +  ++++  +   
Sbjct: 3   FESLADRLQQTFKKLRGHGKLTEDDVNEAMREVRMALLEADVNFKVVKDFIKKVKERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V E + +++       N   S  P VI++ G+ G GKTT  GKL
Sbjct: 63  QDVLDTLTPAQVVIKIVDEELTELMGGTQSRLNIS-SVPPTVIMMAGLQGAGKTTSAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              +   G K +L A D +R AA+ QL++  ++          G+DA  +A  +   A++
Sbjct: 122 GLSLKKQGKKPLLVAADIYRPAAVKQLQVLGEQLGIPVFSMPQGTDAVTIARSSIDHARS 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRLH +  LM  +  +   +K      PH +L V+DA TGQ+A+   E 
Sbjct: 182 HINDVVIIDTAGRLHIDEKLMQELKDIKADVK------PHEILLVVDAMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DG ARGG  + +      P+ F+G+GE +  LEPF     ++ I 
Sbjct: 236 FNEGLGIDGVVLTKLDGDARGGAALSVKAVTGCPIKFVGMGEKLEALEPFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|294645090|ref|ZP_06722816.1| signal recognition particle-docking protein FtsY [Bacteroides
           ovatus SD CC 2a]
 gi|292639596|gb|EFF57888.1| signal recognition particle-docking protein FtsY [Bacteroides
           ovatus SD CC 2a]
          Length = 349

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 122/302 (40%), Positives = 181/302 (59%), Gaps = 6/302 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     I++ +  +  
Sbjct: 45  LDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRIEKRAA 104

Query: 76  A-KDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           A K V+ Q +   + + I  +L   +      F+   + +P+VI+VVGVNGVGKTT IGK
Sbjct: 105 ADKYVNTQELNLILRDEIAALLTENNSNDVADFDVPITRKPYVIMVVGVNGVGKTTTIGK 164

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A++AY+    A 
Sbjct: 165 LAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPASVAYDTLSSAV 224

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P+AP  VL VLD +TGQNA  Q +
Sbjct: 225 ANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGSTGQNAFEQAK 284

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ F   +F   +
Sbjct: 285 QFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEFVDSL 344

Query: 311 TG 312
            G
Sbjct: 345 FG 346


>gi|126725602|ref|ZP_01741444.1| signal recognition particle-docking protein FtsY [Rhodobacterales
           bacterium HTCC2150]
 gi|126704806|gb|EBA03897.1| signal recognition particle-docking protein FtsY [Rhodobacterales
           bacterium HTCC2150]
          Length = 420

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 130/308 (42%), Positives = 200/308 (64%), Gaps = 11/308 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K A E    + ++          L       +  R LDD + E+LE+LLI SD+GV  A 
Sbjct: 121 KPAPEKTGILGRI----------LGRKPATPVVKRVLDDDMLEQLEELLITSDMGVETAL 170

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++   +   R+ K +S   +   +++ + ++L P++KP    ++ +P V+LVVGVNG GK
Sbjct: 171 RVTANMAEGRFGKKLSSSEIKSLLAQEVARILEPVAKPMPL-YTKKPQVVLVVGVNGSGK 229

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ +   AG  V++AAGDTFR+AA++QL++W +R +   + +  GSD A+LA++
Sbjct: 230 TTTIGKLASQFKAAGKSVVIAAGDTFRAAAVEQLQVWGERANVPVLTAPEGSDPASLAFD 289

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A  +A+    D+L+IDTAGRL N S LM  + K++RV+++ DP APH+ L VLDATTGQN
Sbjct: 290 AMTKAENDGADLLLIDTAGRLQNRSDLMEELAKIVRVIRKKDPEAPHNTLLVLDATTGQN 349

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QV+ F  +A  +GL+MTK+DGTA+GG L+ +     +P++ +GVGE I+DL PF  +
Sbjct: 350 ALNQVDAFQKLADVSGLVMTKLDGTAKGGVLVALADRFGLPIHAIGVGEQIDDLAPFDPE 409

Query: 305 DFSAVITG 312
           +F+A +TG
Sbjct: 410 EFAAALTG 417


>gi|114321087|ref|YP_742770.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227481|gb|ABI57280.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 456

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + +  +    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDNLSGRLSDAMGRLRGKGRLTEDNIKDTLREVRMALLEADVALPVVREFIAQVRERAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++   +   +   +  P V+L+ G+ G GKTT   KL
Sbjct: 62  AEVMKSLTPGQALIKIVKDELVQVMGEENDALDL-AAKPPAVVLLAGLQGSGKTTSTAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KV++ + D +R AAI+QL+  AD    ++  S    D   +A  A   A+
Sbjct: 121 ARYLTEREKKKVLVVSCDIYRPAAIEQLRTLADEVGVEWFPSAADQDPERIARAALDHAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGRLH +  LM  + ++ + +       P   L V+D+ TGQ+A     
Sbjct: 181 KQFFDVLLVDTAGRLHIDQDLMDEVQRLHKAVT------PVETLFVVDSMTGQDAANTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFHDALPLTGVILTKTDGDARGGAALSIRHITGKPIKFLGVGEKTTALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|197303265|ref|ZP_03168306.1| hypothetical protein RUMLAC_01988 [Ruminococcus lactaris ATCC
           29176]
 gi|197297691|gb|EDY32250.1| hypothetical protein RUMLAC_01988 [Ruminococcus lactaris ATCC
           29176]
          Length = 451

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++ S  RL +        E++  L+ +D+   V +  ++++  +  
Sbjct: 2   AFDSLSEKLQNVFKNLRSKGRLTEADVKAALREVKMALLEADVNFKVVKGFIKDVQERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + +++   +            VI++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEELIRLMGSETTEIKLQPGSAITVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G K +L A D +R AAI QL+I  ++   +       +  A +A  A + A 
Sbjct: 122 LAGKFKLKGKKPLLVACDVYRPAAIKQLEINGEKQGVEVFSMGNKNKPADIAKAAMEHAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+    
Sbjct: 182 KNGNNIVILDTAGRLHIDEDMMAELQEIKEAVT------VHQTILVVDAMTGQDAVNVAS 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 SFNDKIGIDGVIVTKLDGDTRGGAALSIKAVTGRPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|85712459|ref|ZP_01043508.1| Signal recognition particle GTPase [Idiomarina baltica OS145]
 gi|85693737|gb|EAQ31686.1| Signal recognition particle GTPase [Idiomarina baltica OS145]
          Length = 454

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + +  I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSERLTQTLRSIGGKGRLTEDNIKSTLREVRMALLEADVALPVVKEFIGKVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   + P +   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVNKSLTPGQVFVKIVQSELEAAMGEANVPLDLS-TQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KVM+ + D +R AAI QL+  A++    F  S        +A  A  +A+
Sbjct: 121 AKYLKERQKKKVMVVSADIYRPAAIKQLETLAEQVDVSFFPSTTAQSPVEIAQGAIAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VDV+++DTAGRL  +  +M  I  +   +K      P   L V+D+ TGQ+A    +
Sbjct: 181 KQFVDVVLVDTAGRLTIDEDMMQEIQHLHTEIK------PVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|284047845|ref|YP_003398184.1| signal recognition particle protein [Acidaminococcus fermentans DSM
           20731]
 gi|283952066|gb|ADB46869.1| signal recognition particle protein [Acidaminococcus fermentans DSM
           20731]
          Length = 448

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL   I  +   + + +  ++E L +    L+ +D+   V ++   ++  +  
Sbjct: 2   AFEILTDKLTAAIQKLRGQKTVSEQDLKETLREVRLALLEADVNFKVVKEFTAKIRERAM 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + V       Q ++  V E + ++L       N   ++ P VI++VG+ G GKTT +GK
Sbjct: 62  GQQVDPNLTPGQYIVKIVHEELIELLGGTQSKLNV-AANPPTVIMLVGLQGAGKTTTVGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G K ++ AGD +R AAI QL++   +                +A E+ K+A 
Sbjct: 121 LANYLRKNGKKPLMVAGDVYRPAAITQLEVIGKQLDMPVFSMGDQVSPVEIARESLKRAN 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   D ++IDTAGRLH +  LM  +  M   +       P  +L V+DA TGQ+A+   +
Sbjct: 181 ALLCDTVLIDTAGRLHVDETLMNELKDMKTAVN------PDEILLVVDAMTGQDAVTVAD 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TGLI+TK+DG ARGG ++ +      PV F+G+GE ++ L+PF     ++ I
Sbjct: 235 SFNKALGITGLIVTKLDGDARGGAVLSVKAVTNCPVKFVGMGEKLDALQPFYPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|260663573|ref|ZP_05864463.1| signal recognition particle protein [Lactobacillus fermentum
           28-3-CHN]
 gi|260552114|gb|EEX25167.1| signal recognition particle protein [Lactobacillus fermentum
           28-3-CHN]
          Length = 484

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  +    ++ +  +RE   E+   L+ +D+   V +  V+ +  K  
Sbjct: 10  AFEGLTERLQKAMEKLRRKPKVTEADLRETMREIRLALLEADVNFKVVKDFVKTVREKAA 69

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + +M+   + P N   +H P VI++VG+ G GKTT  GK
Sbjct: 70  GAEVLKGLNPAQQIVKIVNDELTEMMGETATPLNKS-AHIPTVIMMVGLQGAGKTTTAGK 128

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K++      + +  A D +R AAI QL+  A              D   +  +  + A
Sbjct: 129 LAKRLKKEENARPLFIAADVYRPAAITQLQQVAASIDVPVFEMGTDVDPVEIVRQGMEVA 188

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  D +IIDTAGRL  +  LM  + K+  + K      P  +L V+DA TGQNA+   
Sbjct: 189 KEKHNDYVIIDTAGRLQIDEQLMEELAKIKELAK------PDEILLVVDAMTGQNAVNTA 242

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG  RGG  + I      P+ F+G GE +++L+ F     ++ 
Sbjct: 243 QGFDDQLDITGVVLTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMDNLDVFHPDRMASR 302

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 303 ILGMGDM 309


>gi|254450341|ref|ZP_05063778.1| signal recognition particle-docking protein FtsY [Octadecabacter
           antarcticus 238]
 gi|198264747|gb|EDY89017.1| signal recognition particle-docking protein FtsY [Octadecabacter
           antarcticus 238]
          Length = 409

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 132/286 (46%), Positives = 193/286 (67%), Gaps = 1/286 (0%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  G    +  R LDD + E LE+LLI +D+GV  A ++   +   R+ K +S Q +   
Sbjct: 123 LGRGDAKTVVRRELDDDMLERLEELLISADMGVDTALRVTSNMAEGRFGKRLSTQEIKEL 182

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           ++  I +++ P+++P    +  +P V+LVVGVNG GKTT IGKL+ +   AG KV++AAG
Sbjct: 183 LAAEITRIMEPVARPMPL-YPTKPQVVLVVGVNGSGKTTTIGKLASQFQAAGKKVVIAAG 241

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QL++W DR     + +  GSD A+LA++A +QA     D+L+IDTAGRL N
Sbjct: 242 DTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMEQAACDGADLLMIDTAGRLQN 301

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + K++RV+++ DP APH+ L VLDATTGQNAL QV+ F  +A  TGLIMTK+D
Sbjct: 302 RADLMEELQKIVRVIRKKDPDAPHNTLLVLDATTGQNALSQVKTFQELADVTGLIMTKLD 361

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           GTA+GG L+ +     +P++ +GVGE I+DL PF  +DF+A +TG 
Sbjct: 362 GTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEDFAAALTGL 407


>gi|168700596|ref|ZP_02732873.1| cell division protein FtsY [Gemmata obscuriglobus UQM 2246]
          Length = 304

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 116/299 (38%), Positives = 172/299 (57%), Gaps = 2/299 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + + +  G   T          +    R+D+   EELE  L  +D+G      IV+ +  
Sbjct: 5   FFKGIKAGLTKTKSVFGGVFDLLRGKGRVDEAFLEELEKRLYLADVGTQATLLIVDRVRQ 64

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
               K+++ +   + V   + ++L   S   N+  S  P V+++ GVNG GKTT I KL+
Sbjct: 65  GFRDKEITGEIETF-VKAQLRELLTDPSPGLNYQASG-PTVVMIAGVNGSGKTTSIAKLA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            ++   G KV+LAA DTFR+AA++QL +WA R   D V     +D +A+A++A ++A+A+
Sbjct: 123 NRLQADGKKVLLAACDTFRAAAVEQLTVWAGRLGCDIVKQGQNADPSAVAHDACEKAKAR 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DVLI+DTAGRLH  + LM  + K+ R++ R  P APH VL VLDATTGQNAL Q E F
Sbjct: 183 GFDVLIVDTAGRLHTQTHLMKELEKIHRIVTRQIPGAPHEVLMVLDATTGQNALVQAEQF 242

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                 TG+I++K+DGTA+GG +  I     +PV F+G+GE I D+EPF    F   + 
Sbjct: 243 SKSVKCTGIILSKLDGTAKGGAVFAIKQKLGLPVKFVGLGEKIEDMEPFDPDAFVTALF 301


>gi|124005298|ref|ZP_01690139.1| signal recognition particle-docking protein FtsY [Microscilla
           marina ATCC 23134]
 gi|123989120|gb|EAY28698.1| signal recognition particle-docking protein FtsY [Microscilla
           marina ATCC 23134]
          Length = 319

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 115/302 (38%), Positives = 177/302 (58%), Gaps = 5/302 (1%)

Query: 15  RKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            KL +G   T       +   ++   ++DD V ++LE++LI SD+GV    KI+E +  +
Sbjct: 13  EKLDQGLEKTKKNFLSKLGKKLVGKSKVDDEVLDDLEEVLISSDVGVDTTIKIIERIEER 72

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              +      +   + + I  +L   +    + F+   + +P+VI+VVGVNGVGKTT IG
Sbjct: 73  VKKEKFFANELDGILKDEIADLLAESNQDNVEEFDLPKNTKPYVIMVVGVNGVGKTTTIG 132

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG +V+L A DTFR+AA+DQLK+W +R     +   +  D A++A++A ++ 
Sbjct: 133 KLANQFKLAGKEVVLGAADTFRAAAVDQLKVWGERVGVPVIELGMNKDPASVAFDAVEKG 192

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV+I+DTAGRL     LM  + K+ RV+ ++ P APH VL VLD +TGQNA+ Q 
Sbjct: 193 VEMNADVVIVDTAGRLQTKVPLMNELSKIKRVMSKVIPEAPHEVLLVLDGSTGQNAISQA 252

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      T L +TK+DGTA+GG +I I    K+PV ++GVGEGI DL+ F   +F   
Sbjct: 253 KAFTEATEVTALAITKLDGTAKGGVVIGISDQFKVPVKYIGVGEGIEDLQIFNKHEFVDS 312

Query: 310 IT 311
           + 
Sbjct: 313 LF 314


>gi|304316926|ref|YP_003852071.1| signal recognition particle protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778428|gb|ADL68987.1| signal recognition particle protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 446

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL++    +    +L +  V+E +++    L+ +D+   V ++ +  +  K  
Sbjct: 2   AFESLTGKLQDIFKKLRGKGKLSEKDVKEAMKEVKIALLEADVNFKVVKEFINTVTEKSL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V++ +  ++       N+     P +I++VG+ G GKTT  GK
Sbjct: 62  GQEVMESLTPAQHVIKIVNDELTALMGSKESKINFS-DKPPTIIMMVGLQGSGKTTTSGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G   +L A D +R AAI QL++     +         +    +A  A   A+
Sbjct: 121 LANYLKSKGKNPVLVACDIYRPAAIKQLQVVGSSINVPVFSMGDKTTPVDIAKGAVDFAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRLH +  LM  +  +       D   P+ +L V+DA TGQ+ +   E
Sbjct: 181 NNNYNVVIIDTAGRLHIDEELMDELKNIK------DAVNPNEILLVVDAMTGQDVVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+I+TK+DG  RGG  + +      P+ F+  GE + D+E F     ++ I
Sbjct: 235 SFNEKLDIDGVILTKLDGDTRGGAALSVKAVTHKPIKFIASGEKLTDIEVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|212636513|ref|YP_002313038.1| signal recognition particle protein [Shewanella piezotolerans WP3]
 gi|212557997|gb|ACJ30451.1| Signal recognition particle protein [Shewanella piezotolerans WP3]
          Length = 453

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 27  FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNSVKERAVG 86

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   +   +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 87  QEVSKSLSPGQAFIKIVQSELENAMGEANEALDLS-AQPPAVIMMAGLQGAGKTTSVAKL 145

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK +       V++ + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 146 SKFLREREKKSVLVVSADVYRPAAIKQLETLATEVEVEFFPSDVSQKPVDIANAAIAHAK 205

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 206 LKFIDVVIVDTAGRLHVDEAMMDEIKDLHATVN------PVETLFVVDAMTGQDAANTAK 259

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LE F     ++ I
Sbjct: 260 AFNEALPLTGVVLTKVDGDARGGAALSIRNITGKPIKFLGVGEKTDALEAFHPDRIASRI 319

Query: 311 TGCLD 315
            G  D
Sbjct: 320 LGMGD 324


>gi|330874827|gb|EGH08976.1| signal recognition particle protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 501

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +D++I+DTAGRLH +  +M  I  +    K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDMVIVDTAGRLHVDVEMMGEIQALHAATKPA------ETLFVVDAMTGQDAANTPK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|88860520|ref|ZP_01135158.1| 4.5S-RNP protein, GTP-binding export factor [Pseudoalteromonas
           tunicata D2]
 gi|88817718|gb|EAR27535.1| 4.5S-RNP protein, GTP-binding export factor [Pseudoalteromonas
           tunicata D2]
          Length = 457

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L + + +I    RL +        E+   L+ +D+ + V +  V+ +  +   
Sbjct: 2   FENLQERLGKTLKNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFVKVVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V + + K +   ++  N + +  P VI++ G+ G GKTT + KL
Sbjct: 62  VEVTKSLSPGQVFVKIVRQELEKAMGEANEELNLN-AQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +++   K + + + D +R AAI QL+  A     +F  S+I      +A  A   A+
Sbjct: 121 AKFLTERKKKSVLVVSADVYRPAAIKQLETLATEVKVEFFPSDISQKPIDIANNAISHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +S +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 RKFIDVVIVDTAGRLHVDSNMMDEIKALHSAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG ARGG  + I      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|146281574|ref|YP_001171727.1| signal recognition particle protein Ffh [Pseudomonas stutzeri
           A1501]
 gi|145569779|gb|ABP78885.1| signal recognition particle protein Ffh [Pseudomonas stutzeri
           A1501]
          Length = 482

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 26  FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNRVKERAVG 85

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   + +++   ++    + +  P V+L+ G+ G GKTT +GKL
Sbjct: 86  TEVSKSLTPGQAFVKIVRAELEELMGAANEDLALNVT-PPAVVLMAGLQGAGKTTTVGKL 144

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K + + + D +R AAI QL+  A      F  S+       +A  A ++A+
Sbjct: 145 ARFLKERKKKTVLVVSADVYRPAAIKQLETLAGEVGVTFFPSDTSQKPVDIAQAAIREAK 204

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+++DTAGRL  ++ +MA I  +   +K          L V+DA TGQ+A     
Sbjct: 205 LKFIDVVLVDTAGRLAIDAEMMAEIQAVHAAIKPA------ETLFVVDAMTGQDAANTAR 258

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + +      P+ FLG+GE  + LEPF     ++ I
Sbjct: 259 AFGDALPLTGVVLTKVDGDARGGAALSVRHVTGKPIKFLGMGEKSDALEPFHPDRIASRI 318

Query: 311 TGCLD 315
            G  D
Sbjct: 319 LGMGD 323


>gi|295094758|emb|CBK83849.1| signal recognition particle protein [Coprococcus sp. ART55/1]
          Length = 448

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+     + S   L +D V+E   E++  L+ +D+   V +  V+ +  +  
Sbjct: 2   AFDSLSDKLQNVFKKLRSKGVLTEDDVKEAMKEVKRALLEADVNFKVVKSFVKSVSDRAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V         V+  V E + K++           S+   +I++ G+ G GKTT   K
Sbjct: 62  GEEVLKGLNPGHMVIKIVKEEMDKLMGSEMTEIKLRPSNEITIIMMCGLQGAGKTTTAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +  + G K +L A D +R AAI QL++  ++           +    +A  A + A 
Sbjct: 122 LAYQFKNKGKKPLLVACDVYRPAAIKQLQVNGEKVGVPVFAMGDNNKPLDIAKAAVQHAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++++ +DTAGRLH +  +M  + ++   L           +  +D+ TGQ+A+    
Sbjct: 182 KNNINLVFLDTAGRLHVDEDMMNELAEIKENLDIAY------TILTVDSMTGQDAVNVAT 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ + G+GE + DLEPF     ++ I
Sbjct: 236 TFNDKIGIDGVILTKLDGDTRGGAALSIKAVTGKPILYSGMGEKLTDLEPFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|170701094|ref|ZP_02892070.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria IOP40-10]
 gi|170133995|gb|EDT02347.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria IOP40-10]
          Length = 386

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 183/308 (59%), Gaps = 7/308 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   +
Sbjct: 84  QDASAKKSWLVRLKTGLAKT----GSSITGVFVNTKIDEDLYEELEAALLMSDAGVDATE 139

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++  L  K     ++  + +   + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 140 YLLGALREKVKTGRLTDPQQVKSALHDLLVELLKPLEKSLMLGRAQ-PLVMMITGVNGAG 198

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 199 KTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV-QQESGDPAAVIF 257

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 258 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQ 317

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 318 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSA 377

Query: 304 KDFSAVIT 311
            +F+  + 
Sbjct: 378 VEFADALL 385


>gi|255261414|ref|ZP_05340756.1| cell division protein FtsY [Thalassiobium sp. R2A62]
 gi|255103749|gb|EET46423.1| cell division protein FtsY [Thalassiobium sp. R2A62]
          Length = 574

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 130/311 (41%), Positives = 200/311 (64%), Gaps = 11/311 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
             +  ++   +  ++          L  G    +  R LDD + E LE+LLI +D+GV  
Sbjct: 273 PSEETAKKPGFFGRM----------LGRGEKKTVVRRALDDDMLESLEELLITADMGVHT 322

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A ++   +   R+ K +SV  +   ++  + +++ P++KP    ++ +P V+LVVGVNG 
Sbjct: 323 ALRVTANMAEGRFGKKLSVDEIKELLASEVTRIMEPVAKPMPL-YAKKPQVVLVVGVNGS 381

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL++W DR     + +  GSD A+LA
Sbjct: 382 GKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLA 441

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A  QA+A   D+L+IDTAGRL N + LM  + K++RV+++ DP APH+ L VLDATTG
Sbjct: 442 FDAMTQAEADGADLLMIDTAGRLQNRADLMEELAKIVRVIRKKDPEAPHNTLLVLDATTG 501

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QV+ F  +A  +GL+MTK+DGTA+GG L+ +     +P++ +GVGE I+DL PF 
Sbjct: 502 QNALSQVKTFQELADVSGLVMTKLDGTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFD 561

Query: 303 AKDFSAVITGC 313
            +DF+A +TG 
Sbjct: 562 PEDFAAALTGL 572


>gi|94267668|ref|ZP_01290954.1| Signal recognition particle protein [delta proteobacterium MLMS-1]
 gi|93451906|gb|EAT02634.1| Signal recognition particle protein [delta proteobacterium MLMS-1]
          Length = 456

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L++   D+     L +        E+   L+ +D+   VA+  ++ +  K   
Sbjct: 2   FDNLSNRLQDVFKDLRGQGTLSEENIQEAMREVRLALLEADVNFQVARDFIDAVTEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V + +  +L   +       S  P VI++VG+ G GKTT  GKL
Sbjct: 62  HEVLRSLNPDQQVIKIVHQELVDLLGGSTAALELG-SRTPAVIMLVGLQGSGKTTSAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++++   G K  L   D +R AAIDQL + A+        S    D   +  +A  +A  
Sbjct: 121 ARRLRGEGRKPYLVPADVYRPAAIDQLTVLAESLQVPVYPSRSDQDPVTICRQALHRADE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D L+IDTAGRLH +  LM  +G++   L+         +L V DA TGQ+A+   E 
Sbjct: 181 AGCDTLLIDTAGRLHVDETLMDELGRLKEALQPA------EILLVADAMTGQDAVTVAEK 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     +G+I+TK+DG ARGG  + I      P+ F+G+GEG++ LEPF     ++ I 
Sbjct: 235 FHQDLDLSGVILTKLDGDARGGAALSIRRATGRPLKFVGLGEGLDALEPFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GKGD 298


>gi|160947508|ref|ZP_02094675.1| hypothetical protein PEPMIC_01442 [Parvimonas micra ATCC 33270]
 gi|158446642|gb|EDP23637.1| hypothetical protein PEPMIC_01442 [Parvimonas micra ATCC 33270]
          Length = 326

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 127/308 (41%), Positives = 189/308 (61%), Gaps = 7/308 (2%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +  S+  +L KG  +T   L   I +++S S ++D+ + EELE +L+ +DIG  V  +++
Sbjct: 20  KKQSFFERLKKGLVNTRNNLSSKIDNLLSMSTKIDEELFEELEYILVSADIGANVTMELI 79

Query: 68  EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVG 123
           ++L      + ++   ++ D + EL++  L   SK  N DF+     P +ILVVGVNGVG
Sbjct: 80  DDLKEIVKKEKITEPSLIKDKLIELMNSKLA--SKELNHDFNIIDGIPTIILVVGVNGVG 137

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K    G  VML A DTFR+AA +QL  WA+R+    + +E G+D A++ Y
Sbjct: 138 KTTSIGKLANKFKSKGKNVMLVAADTFRAAATEQLTEWANRSGVPIISNEEGADPASVVY 197

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  + A++K +DVLI DTAGRLHN   LM  + K+ RV+ R  P A   V  VLDATTGQ
Sbjct: 198 DGIQSAKSKNIDVLICDTAGRLHNKKNLMNELNKIARVIDREYPEANKEVTLVLDATTGQ 257

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q + F   A    +I+TK+DGTA+GG +  I +  +IPV  +G+GE I+DL+ +  
Sbjct: 258 NAIVQAKEFRDTANIDSVILTKLDGTAKGGVVFTIQLEMEIPVKQIGIGEQIDDLQDYND 317

Query: 304 KDFSAVIT 311
           +DF   I 
Sbjct: 318 EDFVNAIF 325


>gi|317503241|ref|ZP_07961299.1| cell division protein FtsY [Prevotella salivae DSM 15606]
 gi|315665654|gb|EFV05263.1| cell division protein FtsY [Prevotella salivae DSM 15606]
          Length = 316

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 126/301 (41%), Positives = 184/301 (61%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T   +   +T  ++ + ++DD V + LE++LI SD+GV    KI+E + ++  
Sbjct: 15  LDKGLEKTKESVFSKLTRAVAGKSKVDDEVLDNLEEVLITSDVGVDTTLKIIERIESRVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFN----WDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   + E I  +L   +   N        H+P+VILVVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTSELNGILREEIASLLSENNSDDNDSWDLPSDHKPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +  +AG KV L A DTFR+AA++Q+ IW DR     V  ++GSD A++A++  + A+
Sbjct: 135 LAYQFKNAGKKVYLGAADTFRAAAVEQISIWGDRVGVPVVKQQMGSDPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  V+ VLD +TGQNA  Q +
Sbjct: 195 ANGADVVLIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPDEVMLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GE + DL+ F  K+F   +
Sbjct: 255 QFSAVTNITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEKMEDLQLFNRKEFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|323484786|ref|ZP_08090143.1| hypothetical protein HMPREF9474_01894 [Clostridium symbiosum
           WAL-14163]
 gi|323691859|ref|ZP_08106113.1| signal recognition particle protein [Clostridium symbiosum
           WAL-14673]
 gi|323401892|gb|EGA94233.1| hypothetical protein HMPREF9474_01894 [Clostridium symbiosum
           WAL-14163]
 gi|323504066|gb|EGB19874.1| signal recognition particle protein [Clostridium symbiosum
           WAL-14673]
          Length = 454

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++    RL +       +E++  L+ +D+   V ++ +  +  +  
Sbjct: 2   AFESLADKLQNVFKNLTGKGRLSEADVKAGLKEVKMALLEADVSFKVVKQFINSVQEQAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q V+  V++ + K++           S+   VI++ G+ G GKTT   K
Sbjct: 62  GTDVLNGLHPGQMVIKIVNDELVKLMGSEMTEIALKPSNEITVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G   +LAA D +R AA++QL+   ++          G     +A  A + A 
Sbjct: 122 IAGKLKAKGRNPLLAACDVYRPAAVEQLQKNGEKQGVPVFSMGTGHKPVNIAKAAIEHAS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRLH +  +M  + ++   +        +  L V+DA TGQ+A+    
Sbjct: 182 KNGHNVVIIDTAGRLHIDEDMMNELVEIKENVD------VYQTLLVVDAMTGQDAVNVAG 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           MF+   G  G+I+TKMDG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 MFNDKIGIDGVILTKMDGDTRGGAALSIKAVTGKPIIYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|119774025|ref|YP_926765.1| signal recognition particle protein [Shewanella amazonensis SB2B]
 gi|119766525|gb|ABL99095.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           amazonensis SB2B]
          Length = 457

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  I    RL +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKTISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFVNAVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV+      Q  +  V   + K +   ++  N   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QDVAKSLTPGQVFVKIVQSELEKAMGEANEALNL-AAQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK +       V++ + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 SKFLRTRQKKSVLVVSADVYRPAAIKQLETLAKEVEVEFFPSDVSQKPIDIANAAISHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|254482617|ref|ZP_05095855.1| signal recognition particle-docking protein FtsY [marine gamma
           proteobacterium HTCC2148]
 gi|214036976|gb|EEB77645.1| signal recognition particle-docking protein FtsY [marine gamma
           proteobacterium HTCC2148]
          Length = 372

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 197/313 (62%), Gaps = 3/313 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIG 59
            +N     +      +L +G   TS  L +G+ ++    + +D+ + EELE  L+ +D+G
Sbjct: 54  FTNDAAPQDKPGIFGRLRRGLGRTSDSLVQGLGNLFLGRKEIDEELLEELESRLLMADVG 113

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           +     I+++L+ +   K+++   +L   + E +  +L P  +P +    H+P+VIL+VG
Sbjct: 114 IEATMDIIDKLMLRVSRKELTNPELLQGALKEELLSLLKPCEQPLSVS-GHQPYVILMVG 172

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W DR S   V    G+D+
Sbjct: 173 VNGVGKTTTIGKLAKRFQSQGKSVMLAAGDTFRAAAVEQLQVWGDRNSVPVVAQHTGADS 232

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ ++A + AQA+ +DVLI DTAGRLHN   LM  + K++RV+ +LD  APH V+ VLD
Sbjct: 233 ASVIFDALQAAQARNIDVLIADTAGRLHNKDNLMEELKKVVRVMGKLDQSAPHEVMLVLD 292

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQNAL Q + F    G +G+ +TK+DGTA+GG +  I     +P+ F+G+GE ++DL
Sbjct: 293 AGTGQNALAQADHFQQWVGVSGISLTKLDGTAKGGVIFAIAKKLGLPIRFIGIGEAVDDL 352

Query: 299 EPFVAKDFSAVIT 311
            PF A+ F   + 
Sbjct: 353 RPFEAEPFIEALF 365


>gi|319940798|ref|ZP_08015137.1| signal recognition particle-docking protein FtsY [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805680|gb|EFW02461.1| signal recognition particle-docking protein FtsY [Sutterella
           wadsworthensis 3_1_45B]
          Length = 329

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 118/306 (38%), Positives = 178/306 (58%), Gaps = 10/306 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            W  +L  G + T +     I  + S   +D+   EELE  LI +D+GV     I+E L 
Sbjct: 27  GWFSRLKNGLSRTRVN----IVGLFSGGVVDEDFLEELEFALISADVGVETTTHILERLR 82

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           +    + +  Q  +   + + +  +L P     N D + +P VI++ GVNG GKTT IGK
Sbjct: 83  SDIKLQGLKTQEEVKLALRDELVTILKPAEGVLNVDQA-KPCVIMMCGVNGAGKTTSIGK 141

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K+ +D G  V+LAAGDTFR+AA +QL +W +R   + +  + G D AA+ ++A    +
Sbjct: 142 LAKRFADNGKSVLLAAGDTFRAAAREQLAVWGERNRVEVIA-QTGGDPAAVVFDAVNAGR 200

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ +DV+I DTAGRL   + LM  + ++ R  ++    APH V+ V+D T GQNAL QV 
Sbjct: 201 ARSMDVVIADTAGRLPTQTNLMEELSRIRRAQEKALEGAPHEVILVVDGTNGQNALAQVA 260

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK---IPVYFLGVGEGINDLEPFVAKDFS 307
            F   A  TGLI+TK+DGTA+GG L  I        +P+Y++GVGE + DL+PF A++F+
Sbjct: 261 AFDTYAHLTGLIVTKLDGTAKGGVLAAITAARGERRLPIYYIGVGEKLEDLQPFSAEEFA 320

Query: 308 AVITGC 313
             + G 
Sbjct: 321 NALVGL 326


>gi|269836377|ref|YP_003318605.1| signal recognition particle protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269785640|gb|ACZ37783.1| signal recognition particle protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 504

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      I +  RL     D    E+   L+ +D+   V +  V  +  +   
Sbjct: 2   FETLSDRLTAVFQRIGNKGRLTEQDVDEAMREVRRALLEADVNYKVVRDFVSAVRERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + + K+L     P        P +++VVG+ G GKTT + K+
Sbjct: 62  EEVLKALTPAQQVISIVRDELIKILGEERVPLQLAQV-PPTIVMVVGLQGSGKTTHVAKI 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + ++ A D +R AAIDQL+    +           ++   +A  A K A+ 
Sbjct: 121 ANLLKKEGRRPLMVAADVYRPAAIDQLQTLGGQIDVPVYSEGTKANPVDIAKNAVKLARD 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +   V++IDTAGRL  +  +M  + ++   +K      PH +L V DA TGQ A+   + 
Sbjct: 181 RGYTVVLIDTAGRLQIDEPMMQEVERIAEAVK------PHEILLVADAMTGQEAVNVAQE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     TGL++TKMDG ARGG  + I     +P+ ++G GE I+ +EPF     ++ I 
Sbjct: 235 FHRRLALTGLVLTKMDGDARGGAALSIRSVVGVPIKYIGTGERIDAVEPFYPDRLASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|257439117|ref|ZP_05614872.1| signal recognition particle-docking protein FtsY [Faecalibacterium
           prausnitzii A2-165]
 gi|257198495|gb|EEU96779.1| signal recognition particle-docking protein FtsY [Faecalibacterium
           prausnitzii A2-165]
          Length = 312

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 123/298 (41%), Positives = 178/298 (59%), Gaps = 4/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            K+  G   T       I + ++  ++DD + +ELE+ LI +D+G  VA K+V++L  + 
Sbjct: 12  DKMKDGLEKTRTGFWGNIMNTLTGSKIDDDLYDELEEQLILADVGGEVAIKLVDKLRDRV 71

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             K +         S+ +  ++    +P    D S  P VIL++GVNGVGKTT I KL+ 
Sbjct: 72  NEKGLKTGEQ---ASDELRDLIADEMRPEAEMDLSGMPAVILIIGVNGVGKTTSIAKLAD 128

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
             +  G KVMLAAGDTFR+AA +QL+IWADR     V +  G+D AA+ ++  K A A+ 
Sbjct: 129 FYTRQGKKVMLAAGDTFRAAASEQLEIWADRAGVPLVKAGEGADPAAVIFDTVKSATARG 188

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D++I DTAGRLHN + LMA + K+ R +K+  P A    L VLDA TGQNA+ Q   F 
Sbjct: 189 YDLVIADTAGRLHNKANLMAELSKISRSVKKASPEASLETLLVLDAITGQNAISQAREFC 248

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             A  TG+I+TK+DGTA+GG ++ +     +PV F+GVGEGI+DL PF  + +   + 
Sbjct: 249 KAANATGIILTKLDGTAKGGCVVAVKQRLGLPVRFIGVGEGIDDLIPFTPEGYVEELL 306


>gi|256831064|ref|YP_003159792.1| signal recognition particle protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256580240|gb|ACU91376.1| signal recognition particle protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 492

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+     +    RLD+        E+   L+ +D+   V +  VE++  +   
Sbjct: 2   FDSLSDRLESVFKKLRGHGRLDESNIQDGLREVRLALLEADVNFKVVKDFVEKVKARALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V E + ++L   +   N      P+VI++ G+ G GKTT   KL
Sbjct: 62  QDVLGSLTPGQQVIKIVHEELIELLGGENCALNLS-GKPPYVIMMSGLQGSGKTTSAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +        L   D +R AAIDQL             S +  +   +  +A + A+ 
Sbjct: 121 ALFLRRQKYAPYLVPADVYRPAAIDQLTKLGAELGVPVYPSTVDMNPVDICVDAMRDAEL 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K   V++IDTAGRLH + +LM  +  +           P  +L V DA TGQ+A+   E 
Sbjct: 181 KGCSVILIDTAGRLHIDELLMQELVGIKEKC------RPQEILFVADAMTGQDAVTVAEK 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ V   TG+++TKMDG ARGG  + I      P+ F+G+GE +++LE F     ++ I 
Sbjct: 235 FNEVLDITGVVLTKMDGDARGGAALSIKSITGKPLKFVGMGERLSELEVFHPDRIASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|114566315|ref|YP_753469.1| signal recognition particle GTPase-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337250|gb|ABI68098.1| signal recognition particle-docking protein FtsY [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 305

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 128/300 (42%), Positives = 185/300 (61%), Gaps = 3/300 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + KL KG + T       I  ++ SS++LDD   EELE++LI++D+GV    ++V+ +  
Sbjct: 1   MDKLKKGLSKTRENTIGKIEALVKSSKKLDDDFWEELEEILIQADVGVNTTIELVDNIKQ 60

Query: 73  KRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               + +     VL  + + + K+L   + P N        VILVVGVNG GKTT I KL
Sbjct: 61  AAKKQKMHDSSEVLELIKDEVRKLLEYNNVPLNIP-ERELAVILVVGVNGAGKTTSIAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +  + G KV+L A DTFR+AAIDQL IWADR   + +  + GSD  A+ ++A   A+A
Sbjct: 120 AYRFHEEGKKVLLGAADTFRAAAIDQLNIWADRVGVELIKHQEGSDPGAVVFDAIHAAKA 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+LIIDTAGRL N + LM  I K+  +++R  P APH VL VLDATTGQNA+ Q ++
Sbjct: 180 RHADILIIDTAGRLQNKANLMKEISKIKNIIQREIPEAPHEVLLVLDATTGQNAISQAKI 239

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGLI++K+DGTA+GG ++ +    KIPV  +G+GEG+ DL  F  + F+  + 
Sbjct: 240 FEEATGVTGLILSKLDGTAKGGIILAVEKELKIPVKLVGIGEGLEDLRDFSPQIFTEALF 299


>gi|260767210|ref|ZP_05876152.1| signal recognition particle subunit Ffh SRP54 [Vibrio furnissii CIP
           102972]
 gi|260617818|gb|EEX42995.1| signal recognition particle subunit Ffh SRP54 [Vibrio furnissii CIP
           102972]
 gi|315181159|gb|ADT88073.1| signal recognition particle protein [Vibrio furnissii NCTC 11218]
          Length = 459

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V ++ V  +  K   
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVSRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVRGELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A+    DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLDVDFFPSSPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +M  I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFFDVLIVDTAGRLAIDEQMMGEIQDLHKAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRYITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|115352920|ref|YP_774759.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria AMMD]
 gi|115282908|gb|ABI88425.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria AMMD]
          Length = 386

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 183/308 (59%), Gaps = 7/308 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   +
Sbjct: 84  QDASAKKSWLTRLKTGLAKT----GSSITGVFVNTKIDEDLYEELEAALLMSDAGVDATE 139

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++  L  K     ++  + +   + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 140 YLLGALREKVKTGRLTDPQQVKSALHDLLVELLKPLEKSLMLGRAQ-PLVMMITGVNGAG 198

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 199 KTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV-QQESGDPAAVIF 257

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 258 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQ 317

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 318 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNA 377

Query: 304 KDFSAVIT 311
            +F+  + 
Sbjct: 378 VEFADALF 385


>gi|146328752|ref|YP_001209342.1| signal recognition particle protein [Dichelobacter nodosus
           VCS1703A]
 gi|146232222|gb|ABQ13200.1| signal recognition particle protein [Dichelobacter nodosus
           VCS1703A]
          Length = 452

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    R+ +   E    E+   LI +D+ + V +++ E +      
Sbjct: 2   FDNLSDRLQATFKKLRGQSRISEENIENALREVRMALIEADVALPVVKEVTETIKEAAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  L  V   + +++   +   N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  QEVGQKLSPDQAFLKIVQAELTRIMGEQNDALNL-ATQPPAVILLAGLQGSGKTTSAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++++ +   KV L + D +R AAI QL+  A++ +A F+ S        +A  A   AQ 
Sbjct: 121 ARRLMNEKKKVALVSVDIYRPAAIKQLQTLAEQINATFILSHEQEAPQDIANRALDFAQK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVLI+DTAGR+H +  LM  I  + + L+      P   L V+DA TGQ+A    + 
Sbjct: 181 QFFDVLIVDTAGRMHVDEQLMNEIKLLHQCLQ------PIETLFVVDAMTGQDAANTAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     TG+I++K+DG ARGG  + I      P+ FLG+GE  + LE F     ++ I 
Sbjct: 235 FHDALPLTGIILSKVDGDARGGAALSIRHITGKPIKFLGIGEKTDALEAFHPDRIASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|119390344|pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
          Length = 430

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 1   FDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVG 60

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 61  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 120 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 180 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIN------PVETLFVVDAMTGQDAANTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 234 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|71901777|ref|ZP_00683846.1| Cell division transporter substrate-binding protein FtsY [Xylella
           fastidiosa Ann-1]
 gi|71728460|gb|EAO30622.1| Cell division transporter substrate-binding protein FtsY [Xylella
           fastidiosa Ann-1]
          Length = 397

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 183/313 (58%), Gaps = 9/313 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           S   V+ +  +W  +L              I  + S+  RLD+ + +E+E  LI +D+GV
Sbjct: 84  STPTVSVDKPNWRERLRGSL------FARNINALFSNNPRLDENLLDEIETALITADVGV 137

Query: 61  AVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +    IV+ L  +  A++   +Q +L  +   +  +L P+SKP        P V LVVGV
Sbjct: 138 STTNAIVDGLRKRMKAREFADIQTLLAALRNELITILRPVSKPLIVKRDALPFVFLVVGV 197

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NGVGKTT IGKL+K     G  +MLAAGDTFR+AA+ QL+ W +R S   +  +   +DA
Sbjct: 198 NGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWGERNSITVIAQKGPNADA 257

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+A + A+A+ ++VLI DTAGRLH    LM  + K+ RVL +LD  APH VL V+D
Sbjct: 258 ASVVYDALQAAKARSIEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVID 317

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            TTGQNAL Q+  FH     TG+++TK+DGTA+GG +  +     IP++F+ +GE + D+
Sbjct: 318 GTTGQNALSQLRQFHVAVNVTGIVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDM 377

Query: 299 EPFVAKDFSAVIT 311
             F  + F   + 
Sbjct: 378 HFFDPEAFVDALL 390


>gi|15615047|ref|NP_243350.1| signal recognition particle [Bacillus halodurans C-125]
 gi|10175104|dbj|BAB06203.1| signal recognition particle [Bacillus halodurans C-125]
          Length = 451

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ +  I    ++ +     +  E+   L+ +D+   V ++ +  +  K  
Sbjct: 2   AFESLAERLQDTLKKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKQFIANVKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E +  ++           S  P V+++VG+ G GKTT   K
Sbjct: 62  GQEVMKSLTPGQQVIKVVNEELTALMGGEQSKIAV-ASKPPTVVMMVGLQGAGKTTTTAK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +        +L A D +R AAI QL+    + +              +A +A ++A
Sbjct: 121 LANHLRKKHNRNPILVAADIYRPAAIKQLETLGKQLNMPVFSLGDQVSPVEIAKQAIERA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D ++IDTAGRLH +  LM  + ++  V K      P  +L V+DA TGQ+A+   
Sbjct: 181 KEEHHDYVLIDTAGRLHIDEELMDELQQVKEVAK------PDEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E FH     +G+++TK+DG  RGG  + +      P+ F G+GE I+ LEPF  +  ++ 
Sbjct: 235 ESFHEQLDVSGVVLTKLDGDTRGGAALSVKAVTNTPIKFAGMGEKIDQLEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|167745645|ref|ZP_02417772.1| hypothetical protein ANACAC_00337 [Anaerostipes caccae DSM 14662]
 gi|167654957|gb|EDR99086.1| hypothetical protein ANACAC_00337 [Anaerostipes caccae DSM 14662]
          Length = 316

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 173/314 (55%), Gaps = 9/314 (2%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   +  +L  G   T   +  G   I      +DD   EELE+++I SD+G+     I+
Sbjct: 9   EKKGFFSRLAAGLTKTRDNIASGFDSIFKGFSSIDDDFYEELEEIMIMSDMGIDTTMSII 68

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGVGKT 125
                 +        +   +  +++   +    K     +DF  +  V+LV+GVNGVGKT
Sbjct: 69  ---ENLKKKVKEEKIKEPEECRQVLIDSIKEQMKLGEEAYDFKDKKSVVLVIGVNGVGKT 125

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GK++  +   G KVM+AA DTFR+ AI+QLK WA R   D +    G+D AA+ Y+A
Sbjct: 126 TSVGKMASLLKGEGKKVMMAAADTFRAGAIEQLKEWAGRAGVDIISQAEGADPAAVVYDA 185

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+ VDVL+ DTAGRLHN   LM  + K+ R+++R  P A    L VLD TTGQNA
Sbjct: 186 VSAAKARNVDVLLCDTAGRLHNKKNLMDELKKINRIVEREYPEAYKETLIVLDGTTGQNA 245

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q + F      +G+I+TK+DGTA+GG  I I     IPV ++G+GE ++DL+PF    
Sbjct: 246 LAQAKQFKEATDISGIILTKLDGTAKGGIAIAIQAELGIPVKYIGIGEQVDDLQPFDPDM 305

Query: 306 FSAVITGCLDYGEE 319
           F   +    D G+E
Sbjct: 306 FVNAL---FDRGDE 316


>gi|262172355|ref|ZP_06040033.1| signal recognition particle subunit Ffh SRP54 [Vibrio mimicus
           MB-451]
 gi|261893431|gb|EEY39417.1| signal recognition particle subunit Ffh SRP54 [Vibrio mimicus
           MB-451]
          Length = 461

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V  +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V + +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVRQQLETVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A+    DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIT------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|229829004|ref|ZP_04455073.1| hypothetical protein GCWU000342_01089 [Shuttleworthia satelles DSM
           14600]
 gi|229792167|gb|EEP28281.1| hypothetical protein GCWU000342_01089 [Shuttleworthia satelles DSM
           14600]
          Length = 451

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 152/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++    RL +       +E+   L+ +D+   V +     +  +  
Sbjct: 2   AFESLSEKLQNAFRNLRGKGRLSEDDVKLALKEIRIALLEADVNYRVVKDFTRAVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             D+       Q+V+  V E + +M+   ++   +       VI+++G+ G GKTT   K
Sbjct: 62  GTDILNGLNPAQQVVKLVDEELTRMMGSETREIAYRPGQEITVIMMIGLQGAGKTTTAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ KM   G + +L A D +R AAIDQL+I A++    F      +  + +A  A++ A+
Sbjct: 122 LAGKMKQKGKRPLLVACDIYRPAAIDQLRINAEKQQVAFFSMGDKNRPSDIARAAYEHAR 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +VLI+DTAGRLH +  +MA + ++   +           + V+DA TGQ+A+   +
Sbjct: 182 KNNNNVLILDTAGRLHIDEDMMAELEEIKSGVDVA------QTILVVDAMTGQDAVNVAQ 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I+TK+DG +RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 TFDQKVGVDGVILTKLDGDSRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|323141933|ref|ZP_08076793.1| signal recognition particle protein [Phascolarctobacterium sp. YIT
           12067]
 gi|322413600|gb|EFY04459.1| signal recognition particle protein [Phascolarctobacterium sp. YIT
           12067]
          Length = 448

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L+  +     + +L +   +    E+   L+ +D+   V +  V ++  +  
Sbjct: 2   AFESLSERLQNALKMFRGNGKLTEEDLKAPMREVRMALLEADVNFKVVKDFVAKVKERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + +       Q+++  V+E + ++L              P VI++VG+ G GKTT  GK
Sbjct: 62  GEAIGEGLNPHQQIIKIVNEELIELLGGTQSKLTV-APKPPTVIMLVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +     K +L AGD +R AAI QL++  ++ +              +A +A ++A 
Sbjct: 121 LANYLKRKHKKPLLVAGDVYRPAAITQLQVLGEQLNVPVFTLGDKVSPVEIAQKAMEKAH 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   D +IIDTAGRLH N  LM  +  +   +       P  +L V+DA TGQ+A+   E
Sbjct: 181 SLACDTVIIDTAGRLHINEELMEELRNIKGAVH------PQEILLVVDAMTGQDAVTVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  GLI+TK+DG ARGG ++ +      PV  +G+GE ++ LEPF     ++ I
Sbjct: 235 SFDKELGIDGLIVTKLDGDARGGAVLSVKAVTGKPVKLIGLGEKLDALEPFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|261419395|ref|YP_003253077.1| signal recognition particle protein [Geobacillus sp. Y412MC61]
 gi|261375852|gb|ACX78595.1| signal recognition particle protein [Geobacillus sp. Y412MC61]
          Length = 469

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L++ +  I    ++ +     +  E+   L+ +D+   V +  + ++  +  
Sbjct: 2   AFEGLSERLQQVMNRIRGKGKVTEADVKEMMREVRLALLEADVNFKVVKDFIRQVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V E +  ++              P V+++VG+ G GKTT  GK
Sbjct: 62  GQEVMKSLTPGQQVIKIVKEELTALMGGEQSQIAV-AKKPPTVVMMVGLQGAGKTTTTGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +           ++   +A +A ++A
Sbjct: 121 LANLLRKRHNRKPLLVAADVYRPAAIKQLETLGKQLDMPVFSLGEHANPVEIAKQALERA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D ++IDTAGRLH +  LM  + +M   +K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEEHYDYVLIDTAGRLHIDEALMDELKQMKEAVK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+I+TK+DG  RGG  + I      P+ F G+GE ++ LEPF  +  ++ 
Sbjct: 235 QSFHEQLGITGVILTKLDGDTRGGAALSIRAVTGAPIKFAGMGEKLDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|224823839|ref|ZP_03696948.1| signal recognition particle protein [Lutiella nitroferrum 2002]
 gi|224604294|gb|EEG10468.1| signal recognition particle protein [Lutiella nitroferrum 2002]
          Length = 452

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   I ++    RL D        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   LDNLTNRLSGVIKNLRGQARLTDANIQDAMREVRMALLEADVALPVVKTFISHVKERALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V+E + K++   +   N      P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEVMGSLTPGQALVGVVNEELTKLMGEKNDALNLAAV-PPAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KV++ + D +R AAI+QLK  A +   ++  S+       +A  A   A+
Sbjct: 121 AKLLKETQKKKVLVVSADVYRPAAIEQLKTLAGQIGVEWFPSDGTQKPVEIARAAVDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   L       P   L V+DA  GQ+A+   +
Sbjct: 181 RHFFDVLMVDTAGRLAIDDAMMQEIKALHASLN------PIETLFVVDAMQGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TKMDG ARGG  + +      P+ F+GVGE +  LEPF  +  ++ I
Sbjct: 235 AFNEALPLTGVILTKMDGDARGGAALSVRHVTGKPIKFIGVGEKLTGLEPFHPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|167766678|ref|ZP_02438731.1| hypothetical protein CLOSS21_01184 [Clostridium sp. SS2/1]
 gi|317497507|ref|ZP_07955826.1| signal recognition particle protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167711615|gb|EDS22194.1| hypothetical protein CLOSS21_01184 [Clostridium sp. SS2/1]
 gi|291558377|emb|CBL37177.1| signal recognition particle protein [butyrate-producing bacterium
           SSC/2]
 gi|316895190|gb|EFV17353.1| signal recognition particle protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 446

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 144/305 (47%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++ S  RL +   +    E++  L+ +D+   V +  ++ +  +  
Sbjct: 2   AFESLSEKLQGVFKNLRSKGRLTEDDVKAAMREVKRALLEADVNFKVVKTFIKSVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V E +  ++            +   +IL+ G+ G GKTT   K
Sbjct: 62  GQDVLNGLNPGQMVIKIVKEEMEALMGSTMTEIQLRPGNEITIILMAGLQGAGKTTTCAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    G + +L A D +R AAI QL++  ++            +   +A  + + AQ
Sbjct: 122 LAGQYKKKGKRPLLVACDVYRPAAIKQLQVNGEKVGVPVFTMGDKQNPVDIAKASVEHAQ 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++I+DTAGRLH +  +M  + ++   +           + V+DA TGQ+A+   +
Sbjct: 182 KNGNNIVILDTAGRLHIDENMMTELVEIKENVD------VFQSILVVDAMTGQDAVNVAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TKMDG  RGG  + I      P+ ++G+GE + DL+ F     ++ I
Sbjct: 236 EFNEKVGVDGIIITKMDGDTRGGAALSIRSVTGKPILYVGMGEKLEDLQQFYPDRMTSRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|71275807|ref|ZP_00652091.1| Cell division transporter substrate-binding protein FtsY [Xylella
           fastidiosa Dixon]
 gi|71900406|ref|ZP_00682539.1| Cell division transporter substrate-binding protein FtsY [Xylella
           fastidiosa Ann-1]
 gi|170730211|ref|YP_001775644.1| cell division protein [Xylella fastidiosa M12]
 gi|71163385|gb|EAO13103.1| Cell division transporter substrate-binding protein FtsY [Xylella
           fastidiosa Dixon]
 gi|71729838|gb|EAO31936.1| Cell division transporter substrate-binding protein FtsY [Xylella
           fastidiosa Ann-1]
 gi|167965004|gb|ACA12014.1| cell division protein [Xylella fastidiosa M12]
          Length = 397

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 183/313 (58%), Gaps = 9/313 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           S   V+ +  +W  +L              I  + S+  RLD+ + +E+E  LI +D+GV
Sbjct: 84  STPTVSVDKPNWRERLRGSL------FARNINALFSNNPRLDENLLDEIETALITADVGV 137

Query: 61  AVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +    IV+ L  +  A++   +Q +L  +   +  +L P+SKP        P V LVVGV
Sbjct: 138 STTNAIVDGLRKRMKAREFADIQTLLAALRNELITILRPVSKPLIVKRDALPFVFLVVGV 197

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NGVGKTT IGKL+K     G  +MLAAGDTFR+AA+ QL+ W +R S   +  +   +DA
Sbjct: 198 NGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWGERNSITVIAQKGPNADA 257

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+A + A+A+  +VLI DTAGRLH    LM  + K+ RVL +LD  APH VL V+D
Sbjct: 258 ASVVYDALQAAKARSTEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVID 317

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            TTGQNAL Q+  FHA    TGL++TK+DGTA+GG +  +     IP++F+ +GE + D+
Sbjct: 318 GTTGQNALSQLRQFHAAVNVTGLVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDM 377

Query: 299 EPFVAKDFSAVIT 311
             F  + F   + 
Sbjct: 378 HFFDPEAFVDALL 390


>gi|312869933|ref|ZP_07730072.1| signal recognition particle protein [Lactobacillus oris PB013-T2-3]
 gi|311094518|gb|EFQ52823.1| signal recognition particle protein [Lactobacillus oris PB013-T2-3]
          Length = 480

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  +    ++ +  +RE   E+   L+ +D+   V +  V+ +  K  
Sbjct: 2   AFEGLTERLQKAMEKLRRKPKVTEADLRETMREIRLALLEADVNFTVVKDFVKTVREKAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + K++   + P N   +H P VI++VG+ G GKTT  GK
Sbjct: 62  GAEVLKGLNPAQQIVKIVNDELTKLMGEEAVPLN-KAAHIPTVIMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++ +    + M  A D +R AAI QL+  AD+            D   +  E  + A
Sbjct: 121 LALRLKNEDHARPMFIAADVYRPAAITQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +IIDTAGRL  +  LM  +  +  ++       P  +L V+D+ TGQNA+   
Sbjct: 181 KQNHNDYVIIDTAGRLQIDEQLMDELANIKELVN------PDEILLVIDSMTGQNAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 235 QGFDDKLDITGVILTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMADLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|188591100|ref|YP_001795700.1| signal recognition particle gtpase [Cupriavidus taiwanensis LMG
           19424]
 gi|170937994|emb|CAP62978.1| Signal recognition particle GTPase [Cupriavidus taiwanensis LMG
           19424]
          Length = 385

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 175/306 (57%), Gaps = 5/306 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           A     W+++L  G + TS  L      +    ++D+ + EELE  L+ +D GV   + +
Sbjct: 85  AEARQGWMQRLRTGLSKTSRNLGT----LFVGVKVDEDLFEELETALLMADAGVEATEYL 140

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           + EL  +  A+ +     +      +   L+   +        +P V+++ GVNG GKTT
Sbjct: 141 LGELRKRVKAERIETAEGVKTALRELLTRLLRPLEKTMELGREQPLVMMIAGVNGAGKTT 200

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL K       KV+LAAGDTFR+AA +QL IW +R +   V  E   D AA+ ++A 
Sbjct: 201 SIGKLCKHFQRYDQKVLLAAGDTFRAAAREQLAIWGERNNVTVVAQE-SGDPAAVIFDAV 259

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+ +D+++ DTAGRL     LM  + K+ RV+ +  P APH VL V+DA TGQNAL
Sbjct: 260 NAAKARGIDIVMADTAGRLPTQLHLMEELKKVKRVISKAMPSAPHEVLLVIDANTGQNAL 319

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +Q   F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++F
Sbjct: 320 QQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFKAEEF 379

Query: 307 SAVITG 312
           +  + G
Sbjct: 380 ADALLG 385


>gi|153823565|ref|ZP_01976232.1| signal recognition particle protein [Vibrio cholerae B33]
 gi|126518919|gb|EAZ76142.1| signal recognition particle protein [Vibrio cholerae B33]
          Length = 434

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V  +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V + +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A+    DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAADTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|259503527|ref|ZP_05746429.1| signal recognition particle protein [Lactobacillus antri DSM 16041]
 gi|259168605|gb|EEW53100.1| signal recognition particle protein [Lactobacillus antri DSM 16041]
          Length = 480

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  +    ++ +  +RE   E+   L+ +D+   V +  V+ +  K  
Sbjct: 2   AFEGLTERLQKAMEKLRRKPKVTEADLRETMREIRLALLEADVNFTVVKDFVKTVREKAA 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + K++   + P N   +H P VI++VG+ G GKTT  GK
Sbjct: 62  GAEVLKGLNPAQQIVKIVNDELTKLMGEEAVPLN-KAAHIPTVIMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++ +    + M  A D +R AAI QL+  A +            D   +  E  + A
Sbjct: 121 LALRLKNEDHARPMFIAADVYRPAAITQLQQVAAQIDVPVFEKGTDVDPVEIVREGMEVA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +IIDTAGRL  +  LM  +  +  ++       P  +L V+D+ TGQNA+   
Sbjct: 181 KQNHNDYVIIDTAGRLQIDEQLMDELANIKELVH------PDEILLVIDSMTGQNAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG  RGG  + I      P+ F+G GE ++DL+ F     ++ 
Sbjct: 235 QGFDDKLDITGVVLTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMSDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|28899308|ref|NP_798913.1| signal recognition particle protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838719|ref|ZP_01991386.1| signal recognition particle protein [Vibrio parahaemolyticus
           AQ3810]
 gi|156975746|ref|YP_001446653.1| hypothetical protein VIBHAR_03481 [Vibrio harveyi ATCC BAA-1116]
 gi|260879000|ref|ZP_05891355.1| signal recognition particle protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260897214|ref|ZP_05905710.1| signal recognition particle protein [Vibrio parahaemolyticus
           Peru-466]
 gi|260900219|ref|ZP_05908614.1| signal recognition particle protein [Vibrio parahaemolyticus
           AQ4037]
 gi|28807532|dbj|BAC60797.1| signal recognition particle protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747879|gb|EDM58757.1| signal recognition particle protein [Vibrio parahaemolyticus
           AQ3810]
 gi|156527340|gb|ABU72426.1| hypothetical protein VIBHAR_03481 [Vibrio harveyi ATCC BAA-1116]
 gi|308088451|gb|EFO38146.1| signal recognition particle protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308089612|gb|EFO39307.1| signal recognition particle protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308110287|gb|EFO47827.1| signal recognition particle protein [Vibrio parahaemolyticus
           AQ4037]
 gi|328474159|gb|EGF44964.1| signal recognition particle protein [Vibrio parahaemolyticus 10329]
          Length = 460

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V ++ V  +  K   
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQAELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPLDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEEMMGEIKDLHSAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|269961270|ref|ZP_06175637.1| Signal recognition particle GTPase [Vibrio harveyi 1DA3]
 gi|269834031|gb|EEZ88123.1| Signal recognition particle GTPase [Vibrio harveyi 1DA3]
          Length = 462

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V ++ V  +  K   
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQAELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEEMMGEIKDLHSAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|15838508|ref|NP_299196.1| cell division protein [Xylella fastidiosa 9a5c]
 gi|9107008|gb|AAF84716.1|AE004011_1 cell division protein [Xylella fastidiosa 9a5c]
          Length = 397

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 183/313 (58%), Gaps = 9/313 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           S   V+ +  +W  +L              I  + S+  RLD+ + +E+E  LI +D+GV
Sbjct: 84  STPTVSVDKPNWRERLRGSL------FARNINALFSNNPRLDENLLDEIETALITADVGV 137

Query: 61  AVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +    +V+ L  +  A++   +Q +L  +   +  +L P+SKP        P V LVVGV
Sbjct: 138 STTNALVDGLRKRMKAREFADIQTLLAALRNELIAILRPVSKPLIVKRDALPFVFLVVGV 197

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NGVGKTT IGKL+K     G  +MLAAGDTFR+AA+ QL+ W +R S   +  +   +DA
Sbjct: 198 NGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWGERNSITVIAQKGPNADA 257

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+A + A+A+  +VLI DTAGRLH    LM  + K+ RVL +LD  APH VL V+D
Sbjct: 258 ASVVYDALQAAKARSTEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVID 317

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            TTGQNAL Q+  FHA    TGL++TK+DGTA+GG +  +     IP++F+ +GE + D+
Sbjct: 318 GTTGQNALSQLRQFHAAVNVTGLVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDM 377

Query: 299 EPFVAKDFSAVIT 311
             F  + F   + 
Sbjct: 378 HFFDPEAFVDALL 390


>gi|118466702|ref|YP_882942.1| signal recognition particle protein [Mycobacterium avium 104]
 gi|118167989|gb|ABK68886.1| signal recognition particle protein [Mycobacterium avium 104]
          Length = 517

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 147/311 (47%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D   E    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTSALAGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKT++ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELIGILGGETRQLAF-AKTPPTVIMLAGLQGSGKTSLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-------GSDAAALAYE 184
           +  +   G   +L A D  R AA++QL++  +R                   D  A+A +
Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAQ 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA    +   +       P  +L VLDA  GQ+
Sbjct: 181 GLAEARAKHHDVVIVDTAGRLGIDDELMAQAAAIRDAID------PDEILFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   E F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             S+ I G  D
Sbjct: 295 RMSSRILGMGD 305


>gi|242084798|ref|XP_002442824.1| hypothetical protein SORBIDRAFT_08g003410 [Sorghum bicolor]
 gi|241943517|gb|EES16662.1| hypothetical protein SORBIDRAFT_08g003410 [Sorghum bicolor]
          Length = 559

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 96/311 (30%), Positives = 154/311 (49%), Gaps = 15/311 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KL+    DI++   + + +R+ +   L+ +D+ + V ++ +E 
Sbjct: 75  RAEMFGQLTTGLESAWNKLRGV--DILTKENIAEPMRD-IRRALLEADVSLPVVRRFIES 131

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  K    DV       Q+++  V++ + +++        +  S  P +IL+ G+ GVGK
Sbjct: 132 VSEKAVGTDVIRGVRPDQQLVKVVNDELVQLMGGEVSDLVFAKSG-PTIILLAGLQGVGK 190

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TTV  KL+  +   G   ML A D +R AAIDQL I   +           +  + +A  
Sbjct: 191 TTVCAKLAFYLKKMGKSCMLVAADVYRPAAIDQLTILGKKVGVPVYSEGTEAKPSQIAKN 250

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             K+A+  K DV+I+DTAGRL  +  +M  + ++ + +       P  VL V+DA TGQ 
Sbjct: 251 GLKEAKVNKADVIIVDTAGRLQVDKSMMNELKEVKKAVN------PTEVLLVVDAMTGQE 304

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + +      P+ F+G GE I DLEPF   
Sbjct: 305 AAGLVSSFNDEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGQGERIEDLEPFYPD 364

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 365 RMAQRILGMGD 375


>gi|219871928|ref|YP_002476303.1| cell division protein, signal recognition particle GTPase
           [Haemophilus parasuis SH0165]
 gi|219692132|gb|ACL33355.1| cell division protein, signal recognition particle GTPase
           [Haemophilus parasuis SH0165]
          Length = 455

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 123/309 (39%), Positives = 193/309 (62%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+  +    +  +L KG   T   +  G  +  S +++DD + EELE+ L+ +D+G+   
Sbjct: 142 QEKPTSEGGFFSRLIKGLIKTKQSIGSGFRNFFSGKKIDDELFEELEEQLLVADLGMPTT 201

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI++ L      + +    +LY  +   +  +L P+++    +   +P+VIL+VGVNGV
Sbjct: 202 TKIIKNLTEHATKQQLRDAELLYQQLKVELADVLKPVAQSLVLE-DKKPYVILMVGVNGV 260

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R +   V    G+D+A++ 
Sbjct: 261 GKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGADSASVI 320

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A AK +DVLI DTAGRL N + LM  + K++RV+K+ D  APH ++  LDA TG
Sbjct: 321 FDAMQSAAAKGIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTG 380

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I     IP+ F+GVGE I+DL  F 
Sbjct: 381 QNAISQAKLFNEAVGLTGITLTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIDDLRSFD 440

Query: 303 AKDFSAVIT 311
           A++F   + 
Sbjct: 441 AEEFIEALF 449


>gi|302039359|ref|YP_003799681.1| cell division protein ftsY-like protein [Candidatus Nitrospira
           defluvii]
 gi|300607423|emb|CBK43756.1| Cell division protein ftsY homolog [Candidatus Nitrospira defluvii]
          Length = 304

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 125/305 (40%), Positives = 183/305 (60%), Gaps = 5/305 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + W++KL+ G + T   +   +  ++  R  D  + +ELE  LI +D+G+ V ++++ +L
Sbjct: 1   MGWLQKLSAGLSKTRDAVTGQLDRLLG-RAADPALLDELEVALISADLGMPVVERVMGQL 59

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTT 126
             +    + S    + D+  + +  +L+P              RP VIL VGVNGVGKTT
Sbjct: 60  RAQMRGGNFSSADKVRDLLRQSVLDILLPTQSASMEQLVAQGPRPFVILAVGVNGVGKTT 119

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            + KL+++    G K +L AGDTFR+AAIDQL++WADR   D +    G+D AA+AY+  
Sbjct: 120 TVAKLTQRFRQQGKKPLLVAGDTFRAAAIDQLQVWADRIEVDVIRHRPGADPAAVAYDGM 179

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+  DV++IDTAGRLH  + LM  + K+ RV+ +    APH VL VLDAT GQNA+
Sbjct: 180 TAAKARGSDVVLIDTAGRLHTKTNLMDELRKIKRVVAQECQGAPHEVLLVLDATVGQNAI 239

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   FH   G TG+ +TK+DGTARGG ++ I  T KIPV  +GVGE + DL+ F AK F
Sbjct: 240 AQARQFHEAVGVTGIALTKLDGTARGGIVVAIADTFKIPVRLIGVGEDVEDLQDFDAKAF 299

Query: 307 SAVIT 311
              + 
Sbjct: 300 VDALF 304


>gi|170725614|ref|YP_001759640.1| signal recognition particle protein [Shewanella woodyi ATCC 51908]
 gi|169810961|gb|ACA85545.1| signal recognition particle protein [Shewanella woodyi ATCC 51908]
          Length = 457

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSRSLKNISGRGRLTEDNVKETLREVRMALLEADVALPVVRDFVNSVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   +   +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELENAMGEANEALDLS-AQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK +       V++ + D +R AAI QL+  A     +F  S++      +   A   A+
Sbjct: 121 SKFLREREKKSVLVVSADVYRPAAIKQLETLATEVEVEFFPSDVSQKPIDIVNAAMAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDESMMDEIKALHAAVN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFYPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|71279264|ref|YP_270728.1| signal recognition particle protein [Colwellia psychrerythraea 34H]
 gi|71145004|gb|AAZ25477.1| signal recognition particle protein [Colwellia psychrerythraea 34H]
          Length = 463

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   FDNLSERLSKTLKNISGRGRLTEDNIKETLREVRMALLEADVALPVIREFIAKVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DVS      Q  +  V + +   +  +++  +   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  TDVSKSLTPGQIFVKIVQKELESAMGEVNEGLDLRAA-PPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KV++ + D +R AAI QL+  A+  S  F  S+I      +A  A   A+
Sbjct: 121 AKFLTEREKKKVLVVSADVYRPAAIKQLETLAEEISVGFFPSDIKQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +MA I ++   +       P   L  +DA TGQ+A    +
Sbjct: 181 KNFYDVLIVDTAGRLHIDENMMAEIQQLHAAIN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ F+GVGE I  LEPF     ++ I
Sbjct: 235 AFNDALPLTGIILTKTDGDARGGAALSIRHITGKPIKFMGVGEKIEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|259046590|ref|ZP_05736991.1| signal recognition particle protein [Granulicatella adiacens ATCC
           49175]
 gi|259036755|gb|EEW38010.1| signal recognition particle protein [Granulicatella adiacens ATCC
           49175]
          Length = 478

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +T +    ++ +   +    E+   L+ +D+   V +  V ++  +  
Sbjct: 2   AFEGLSDRLQNAMTSVSRKGKITEADLKQMMREVRLALLEADVNFKVVKDFVRKVNERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E + +++     PF ++ +  P V+++VG+ G GKTT  GK
Sbjct: 62  GANVLEALSPAQQVVKIVNEELTELMGGEQAPFRFE-AKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      + +L A D +R AAIDQL+    + +              +A +A ++A
Sbjct: 121 LASFMAKHEKKRPLLVAADVYRPAAIDQLQTLGKQLNFPVFSLGNQVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D++IIDTAGRLH +  LM  +  +  V        P  +L V+D+ TGQ+A+   
Sbjct: 181 KIDGRDLVIIDTAGRLHIDETLMEELQNIKAVAN------PSEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG  RGG  + I      P+ F G GE + D E F  +  ++ 
Sbjct: 235 QTFNERLDITGVILTKLDGDTRGGAALSIRSVTGKPIKFTGRGEKLEDFEIFYPERMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|300767270|ref|ZP_07077182.1| signal recognition particle protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180484|ref|YP_003924612.1| signal recognition particle protein [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|300495089|gb|EFK30245.1| signal recognition particle protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045975|gb|ADN98518.1| signal recognition particle protein [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 484

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +T++    ++ +        E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLTERLQKAMTNLRRKGKISESDLRATMREIRLALLEADVNFTVVKDFVKTVRERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              V       Q+++  V E + K +   + P N      P VI++ G+ G GKTT +GK
Sbjct: 62  GAKVLEGLNPAQQIVKIVDEELTKTMGEKAVPLNKS-PKIPTVIMMAGLQGAGKTTTVGK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+ +    + ++ A D +R AAI+QL+    +            D   +  +   QA
Sbjct: 121 LALKLKNEQDARPLMIAADVYRPAAIEQLQQVGRQIDVPVFQLGTDVDPVEIVRQGMAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D + IDTAGRL  +  LM  +  +       D   P  +L V+DA TGQNA+   
Sbjct: 181 QENHNDYVFIDTAGRLQIDEQLMNELANIK------DLVHPDEILLVIDAMTGQNAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     +  
Sbjct: 235 EGFNDKLDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMTDLDVFHPDRMADR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|116492611|ref|YP_804346.1| signal recognition particle-docking protein FtsY [Pediococcus
           pentosaceus ATCC 25745]
 gi|116102761|gb|ABJ67904.1| signal recognition particle-docking protein FtsY [Pediococcus
           pentosaceus ATCC 25745]
          Length = 406

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 170/302 (56%), Gaps = 5/302 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            +  +G   +     + ++ + ++   +D+   ++LE+ LI +D+G   A +I EE+  +
Sbjct: 99  ERYDRGLERSRKSFGQKLSALFTNFSGVDEDFYDDLEETLIEADVGFDTALEISEEVRDE 158

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIG 129
              + VS    +    V  L+       S   N        P V L VGVNGVGKTT IG
Sbjct: 159 IEFEHVSDPDQISQLIVRRLVALYTRNGSAEDNHLVFSKEGPTVFLFVGVNGVGKTTSIG 218

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++ +    G KV+LAA DTFR+ AI QL+ W  R   D V  +  SD A++A+EA K+A
Sbjct: 219 KMAARFKGRGRKVLLAACDTFRAGAIQQLQEWGKRDGVDVVAGKEQSDPASVAFEAVKKA 278

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D+L++DTAGRL N   LM  + K+ RV+ R  P AP   L VLD+TTGQNAL Q 
Sbjct: 279 KEENYDLLLVDTAGRLQNKVNLMNELDKIKRVISREIPDAPQETLLVLDSTTGQNALTQA 338

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DGTA+GG ++ I     + V ++G+GE ++DL PF  + + + 
Sbjct: 339 KAFLETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGETVDDLSPFNPEQYVSG 398

Query: 310 IT 311
           + 
Sbjct: 399 LF 400


>gi|251797472|ref|YP_003012203.1| signal recognition particle protein [Paenibacillus sp. JDR-2]
 gi|247545098|gb|ACT02117.1| signal recognition particle protein [Paenibacillus sp. JDR-2]
          Length = 462

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 144/307 (46%), Gaps = 16/307 (5%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F S + +L+   + +    ++ +        E+   L+ +D+   V +  + ++  K 
Sbjct: 2   AAFESLTNRLQNVFSKLRGKGKVTEEDLNEAMREVRLALLEADVNFKVVKDFIAKVKEKA 61

Query: 75  YAKDVSVQRV-----LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              DVS         +  V++ + +++           +  P VI++VG+ G GKTT   
Sbjct: 62  LGLDVSKSFTPGMVVIDIVNKELTELMGGTQSKL-AKANKPPTVIMMVGLQGAGKTTTTA 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K +     K +L A D +R AAI QL++  ++ +A        +    +A      A
Sbjct: 121 KLAKLLQKGNSKPLLVACDIYRPAAIKQLQVLGEQINAPVFSLGDQTSPVEIAKAGLAHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +I DTAGRLH +  LM  + ++ + +K      P  VL V+DA TGQ+A+   
Sbjct: 181 RENHNDYVIFDTAGRLHIDEALMEELKQIHQNVK------PDEVLLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH     TG+++TK+DG  RGG  + +      P+ F  +GE I+ LEPF     ++ 
Sbjct: 235 QSFHEQLELTGVVLTKLDGDTRGGAALSVKAVTGKPIKFAAMGEKIDALEPFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|83309312|ref|YP_419576.1| Signal recognition particle GTPase [Magnetospirillum magneticum
           AMB-1]
 gi|82944153|dbj|BAE49017.1| Signal recognition particle GTPase [Magnetospirillum magneticum
           AMB-1]
          Length = 332

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 147/302 (48%), Positives = 209/302 (69%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW  +L  G A +S KL +G+ D+ + R+LDD   EELEDLLI +D+GVA+A ++ + L 
Sbjct: 30  SWFGRLKSGLAKSSSKLTQGLGDLFTKRKLDDEALEELEDLLITADLGVAMAARVTKHLA 89

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             R+ +DV+   +   ++E I ++L P++KP   D + +PHV+LVVGVNG GKTT IGK+
Sbjct: 90  KTRFGQDVTSDEIKATLAEEITRILTPVAKPLEIDSTRKPHVVLVVGVNGSGKTTTIGKM 149

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K   DAGL V LAAGDTFR+AA++QLK+W +RT    +  E G+DAA LAY+A +Q++A
Sbjct: 150 AKTYKDAGLNVTLAAGDTFRAAAVEQLKVWGERTHCPVIARETGADAAGLAYDAVEQSRA 209

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+L IDTAGRL N + LMA + K++R +K++D  APH VL VLDAT GQNA  QVE+
Sbjct: 210 RGDDLLFIDTAGRLQNKADLMAELAKLVRSIKKVDETAPHDVLLVLDATVGQNAHSQVEI 269

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   +GL++TK+DGTARGG L+ +     +PV+ +G+GE   DL PF A  F+  + 
Sbjct: 270 FKDMVAVSGLVLTKLDGTARGGVLVALAEKFGLPVHAIGIGEKAEDLRPFEADAFAKSLV 329

Query: 312 GC 313
           G 
Sbjct: 330 GM 331


>gi|302874775|ref|YP_003843408.1| signal recognition particle-docking protein FtsY [Clostridium
           cellulovorans 743B]
 gi|307690609|ref|ZP_07633055.1| signal recognition particle-docking protein FtsY [Clostridium
           cellulovorans 743B]
 gi|302577632|gb|ADL51644.1| signal recognition particle-docking protein FtsY [Clostridium
           cellulovorans 743B]
          Length = 303

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 119/302 (39%), Positives = 185/302 (61%), Gaps = 4/302 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  KL  G   T   L E I  ++ +   +D+ + +ELE++LI +D+GV  +  I++EL
Sbjct: 4   GFFDKLKNGLNKTKENLTEKINVMLGNYISIDEDLFDELEEILITADVGVDTSMFIIDEL 63

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K   + ++    +Y  +  +I ++L    + F       P V+LV+GVNG GKTT IG
Sbjct: 64  KKKIKEERINEVSEVYPALKRVIVEILGSTREDFTKQ--DTPKVMLVIGVNGAGKTTSIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+S K+  +G  V++ A DTFR+AAIDQL++W+ R   + +  + GSD AA+ ++  + A
Sbjct: 122 KMSAKLKKSGYNVLMIAADTFRAAAIDQLEVWSKRAEVEIIKHQEGSDPAAVVFDGVQAA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ VD+L+ DTAGRLHN   LM  +GK+ R+++R   HA    L VLDA+TGQNA+ Q 
Sbjct: 182 KARNVDILLCDTAGRLHNKKNLMNELGKINRIIEREYGHAEKETLLVLDASTGQNAVSQA 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+ +    G+I+TK+DGTA+GG +I I     IPV  +GVGE I+DL+ F A +F   
Sbjct: 242 KQFNEICKVDGIILTKLDGTAKGGVVISIKHELNIPVKLIGVGESIDDLQEFDASEFVEA 301

Query: 310 IT 311
           + 
Sbjct: 302 LF 303


>gi|218185265|gb|EEC67692.1| hypothetical protein OsI_35151 [Oryza sativa Indica Group]
          Length = 557

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 98/311 (31%), Positives = 155/311 (49%), Gaps = 15/311 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KL+   TD ++   + + +R+ +   L+ +D+ + V +  +E 
Sbjct: 73  RAEMFGQLTTGLESAWNKLRG--TDQLTKDNIAEPMRD-IRRALLEADVSLPVVRSFIES 129

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  K    DV       Q+++  V++ + +++        +     P VIL+ G+ GVGK
Sbjct: 130 VTEKAVGTDVIRGVKPEQQLVKVVNDELVQLMGGEVSDLVF-AKTAPTVILLAGLQGVGK 188

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TTV  KL+  +   G   ML A D +R AAIDQL I   +           +  + +A  
Sbjct: 189 TTVCAKLAYYLKKMGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKN 248

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             K+A++KK DV+I+DTAGRL  +  +M+ + ++ R +       P  VL V+DA TGQ 
Sbjct: 249 GIKEAKSKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVN------PTEVLLVVDAMTGQE 302

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + I      P+ F+G GE + DLEPF   
Sbjct: 303 AASLVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPD 362

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 363 RMAQRILGMGD 373


>gi|115484239|ref|NP_001065781.1| Os11g0153700 [Oryza sativa Japonica Group]
 gi|62701662|gb|AAX92735.1| signal recognition particle protein, putative [Oryza sativa
           Japonica Group]
 gi|108864005|gb|ABG22368.1| Signal recognition particle 54 kDa protein, chloroplast precursor,
           putative, expressed [Oryza sativa Japonica Group]
 gi|113644485|dbj|BAF27626.1| Os11g0153700 [Oryza sativa Japonica Group]
 gi|215765043|dbj|BAG86740.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222615534|gb|EEE51666.1| hypothetical protein OsJ_33002 [Oryza sativa Japonica Group]
          Length = 557

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 98/311 (31%), Positives = 155/311 (49%), Gaps = 15/311 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KL+   TD ++   + + +R+ +   L+ +D+ + V +  +E 
Sbjct: 73  RAEMFGQLTTGLESAWNKLRG--TDQLTKDNIAEPMRD-IRRALLEADVSLPVVRSFIES 129

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  K    DV       Q+++  V++ + +++        +     P VIL+ G+ GVGK
Sbjct: 130 VTEKAVGTDVIRGVKPEQQLVKVVNDELVQLMGGEVSDLVF-AKTAPTVILLAGLQGVGK 188

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TTV  KL+  +   G   ML A D +R AAIDQL I   +           +  + +A  
Sbjct: 189 TTVCAKLAYYLKKMGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKN 248

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             K+A++KK DV+I+DTAGRL  +  +M+ + ++ R +       P  VL V+DA TGQ 
Sbjct: 249 GIKEAKSKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVN------PTEVLLVVDAMTGQE 302

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + I      P+ F+G GE + DLEPF   
Sbjct: 303 AASLVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPD 362

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 363 RMAQRILGMGD 373


>gi|220903931|ref|YP_002479243.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868230|gb|ACL48565.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 547

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 185/313 (59%), Gaps = 3/313 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           +  +    E      K+T+G A T  +   G+  + S    LDD   EELE+L I +D+G
Sbjct: 234 LDLEDEEDERSRLFIKITEGLARTREQFARGLDTLFSGHGELDDAFWEELEELFIMADLG 293

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              + ++VE L  +   + V+    +  +  L+ ++      P      + P V+L++GV
Sbjct: 294 YEPSMELVERLKERARKEKVTEASGMRAL--LMAEVEEIFRAPRRIAAVNPPEVVLMIGV 351

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT I KL+ +    G KVM+AA DTFR+AAI+QL++WA+R  A F     G+D A
Sbjct: 352 NGVGKTTTIAKLAHRARMQGKKVMIAAADTFRAAAIEQLQVWAERVGALFHAKSAGADPA 411

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++AYEA  +A  + VD+L +DTAGRL     LM  + K+ +VL +  P APH  + V+DA
Sbjct: 412 SVAYEAMDRAVREGVDILFVDTAGRLQTKVNLMEELTKIRQVLGKKHPGAPHRSILVIDA 471

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q ++F   AG   LI+TK+DGTA+GG  I + + H +P+ F+G+GE + DL 
Sbjct: 472 TTGQNALSQTKLFKEAAGVDELILTKLDGTAKGGVAIAVAMQHHLPITFVGLGEKMEDLR 531

Query: 300 PFVAKDFSAVITG 312
           PF  +D++  + G
Sbjct: 532 PFNGEDYARALLG 544


>gi|153854837|ref|ZP_01996060.1| hypothetical protein DORLON_02065 [Dorea longicatena DSM 13814]
 gi|149752539|gb|EDM62470.1| hypothetical protein DORLON_02065 [Dorea longicatena DSM 13814]
          Length = 449

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 148/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++ S  RL +       +E++  L+ +D+   V +  ++ +  +  
Sbjct: 2   AFDSLTEKLQNVFKNLRSKGRLTEDDVKEALKEIKRALLAADVNFKVVKDFIKSVQERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +            VI++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEELINLMGSETTEIKLQPGKAITVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G K +L A D +R AAI QL++  ++   +          A +A  A + AQ
Sbjct: 122 LAGKFKLKGKKPLLVACDVYRPAAIKQLQVNGEKQGVEVFSMGENHKPANIAKAAIEHAQ 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGRLH +  +MA +       +  +    H  + V+DA TGQ+A+   +
Sbjct: 182 KNGNDLVILDTAGRLHIDEDMMAELE------EIKEEVEVHQTILVIDAMTGQDAVNVAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + +      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 EFNEKVGIDGVIVTKLDGDTRGGAALSVKAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|317472752|ref|ZP_07932065.1| signal recognition particle-docking protein FtsY [Anaerostipes sp.
           3_2_56FAA]
 gi|316899778|gb|EFV21779.1| signal recognition particle-docking protein FtsY [Anaerostipes sp.
           3_2_56FAA]
          Length = 310

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 173/314 (55%), Gaps = 9/314 (2%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   +  +L  G   T   +  G   I      +DD   EELE+++I SD+G+     I+
Sbjct: 3   EKKGFFSRLAAGLTKTRDNIASGFDSIFKGFSSIDDDFYEELEEIMIMSDMGIDTTMSII 62

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGVGKT 125
                 +        +   +  +++   +    K     +DF  +  V+LV+GVNGVGKT
Sbjct: 63  ---ENLKKKVKEEKIKEPEECRQVLIDSIKEQMKLGEEAYDFKDKKSVVLVIGVNGVGKT 119

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GK++  +   G KVM+AA DTFR+ AI+QLK WA R   D +    G+D AA+ Y+A
Sbjct: 120 TSVGKMASLLKGEGKKVMMAAADTFRAGAIEQLKEWAGRAGVDIISQAEGADPAAVVYDA 179

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+ VDVL+ DTAGRLHN   LM  + K+ R+++R  P A    L VLD TTGQNA
Sbjct: 180 VSAAKARNVDVLLCDTAGRLHNKKNLMDELKKINRIVEREYPEAYKETLIVLDGTTGQNA 239

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q + F      +G+I+TK+DGTA+GG  I I     IPV ++G+GE ++DL+PF    
Sbjct: 240 LAQAKQFKEATDISGIILTKLDGTAKGGIAIAIQAELGIPVKYIGIGEQVDDLQPFDPDM 299

Query: 306 FSAVITGCLDYGEE 319
           F   +    D G+E
Sbjct: 300 FVNAL---FDRGDE 310


>gi|291527952|emb|CBK93538.1| signal recognition particle-docking protein FtsY [Eubacterium
           rectale M104/1]
          Length = 313

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 120/309 (38%), Positives = 180/309 (58%), Gaps = 4/309 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVA 63
           +   +   + ++L  G   T   +  GI  + S    +DD   EELE++LI  D+GV   
Sbjct: 2   EEKEKKPGFFKRLVSGLTKTRDNIVSGIDSLFSGFLHIDDDFYEELEEILIMGDLGVRAT 61

Query: 64  QKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + I+E+L  K   + +         + E I + +    +   + F +   V+LV+GVNGV
Sbjct: 62  ESIIEDLQRKVKEQHIKEPAECKELLIESIKEQMK--VEETAYRFENEKSVVLVIGVNGV 119

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT +GKL+ K+ + G KV++A  DTFR+AA DQLK WA+R   D +    G+D  A+ 
Sbjct: 120 GKTTTVGKLAGKLKEQGKKVVIAGADTFRAAAGDQLKEWANRAGVDMIGGAEGADPGAVV 179

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   ++A+  DVL++DTAGRLHN   LM  +GK+ ++L+   P A    L VLDATTG
Sbjct: 180 YDAVAASKARNADVLLVDTAGRLHNKKNLMNELGKINKILESEYPDAYRETLVVLDATTG 239

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q   F  VA  +G+++TKMDGTA+GG  + I     +PV ++GVGE I+DL+ F 
Sbjct: 240 QNALVQAREFSDVAKISGIVLTKMDGTAKGGIAVAIQSELSVPVKYIGVGETIDDLQKFD 299

Query: 303 AKDFSAVIT 311
           + +F   + 
Sbjct: 300 SDEFVNALF 308


>gi|28378333|ref|NP_785225.1| signal recognition particle protein Ffh [Lactobacillus plantarum
           WCFS1]
 gi|254556541|ref|YP_003062958.1| signal recognition particle protein Ffh [Lactobacillus plantarum
           JDM1]
 gi|28271168|emb|CAD64073.1| signal recognition particle protein Ffh [Lactobacillus plantarum
           WCFS1]
 gi|254045468|gb|ACT62261.1| signal recognition particle protein Ffh [Lactobacillus plantarum
           JDM1]
          Length = 484

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +T++    ++ +        E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLTERLQKAMTNLRRKGKISESDLRATMREIRLALLEADVNFTVVKDFVKTVRERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              V       Q+++  V E + K +   + P N      P VI++ G+ G GKTT +GK
Sbjct: 62  GAKVLEGLNPAQQIVKIVDEELTKTMGEKAVPLNKS-PKIPTVIMMAGLQGAGKTTTVGK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+ +    + ++ A D +R AAI+QL+    +            D   +  +   QA
Sbjct: 121 LALKLKNEQDARPLMIAADVYRPAAIEQLQQVGRQIDVPVFQLGTDVDPVEIVRQGMAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D + IDTAGRL  +  LM  +  +       D   P  +L V+DA TGQNA+   
Sbjct: 181 KENHNDYVFIDTAGRLQIDEQLMNELANIK------DLVHPDEILLVIDAMTGQNAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     +  
Sbjct: 235 EGFNDKLDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMTDLDVFHPDRMADR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|262043856|ref|ZP_06016945.1| fifty-four-like protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330013034|ref|ZP_08307556.1| signal recognition particle protein [Klebsiella sp. MS 92-3]
 gi|259038790|gb|EEW39972.1| fifty-four-like protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533620|gb|EGF60334.1| signal recognition particle protein [Klebsiella sp. MS 92-3]
          Length = 486

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 34  FDNLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVG 93

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 94  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLDL-AAQPPAVVLMAGLQGAGKTTSVGKL 152

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 153 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 212

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 213 LKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAIN------PVETLFVVDAMTGQDAANTAK 266

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 267 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRI 326

Query: 311 TGCLD 315
            G  D
Sbjct: 327 LGMGD 331


>gi|167748890|ref|ZP_02421017.1| hypothetical protein ANACAC_03664 [Anaerostipes caccae DSM 14662]
 gi|317470268|ref|ZP_07929662.1| signal recognition particle protein [Anaerostipes sp. 3_2_56FAA]
 gi|167651860|gb|EDR95989.1| hypothetical protein ANACAC_03664 [Anaerostipes caccae DSM 14662]
 gi|316902241|gb|EFV24161.1| signal recognition particle protein [Anaerostipes sp. 3_2_56FAA]
          Length = 446

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 146/305 (47%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++ S  RL +       +E++  L+ +D+   V +  ++ +  +  
Sbjct: 2   AFESLSEKLQNVFKNLRSKGRLTESDVKAAMKEVKRALLEADVNFKVVKTFIKAVQDRAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V E +  ++   +        +   VIL+ G+ G GKTT   K
Sbjct: 62  GQDVLNGLNPGQMVIKIVKEEMEALMGSTTTEIQLKPGNEITVILMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K    G + +L A D +R AAI QL++  ++            +   +A  + + A 
Sbjct: 122 IAGKYKQKGKRPLLVACDVYRPAAIKQLQVNGEKQGVPVFSMGDKMNPVDIAKASIEHAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++I+DTAGRLH +  +M  +  + + +        H  + V+DA TGQ+A+   +
Sbjct: 182 KNGNNIVILDTAGRLHIDEDMMTELIAIKQAVD------VHQTILVVDAMTGQDAVNVAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TKMDG  RGG  + I      P+ ++G+GE ++DL+ F     ++ I
Sbjct: 236 DFNEKVGVDGVIITKMDGDTRGGAALSIRSVTGKPILYIGMGEKLDDLQQFYPDRMTSRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|154251866|ref|YP_001412690.1| signal recognition particle-docking protein FtsY [Parvibaculum
           lavamentivorans DS-1]
 gi|154155816|gb|ABS63033.1| signal recognition particle-docking protein FtsY [Parvibaculum
           lavamentivorans DS-1]
          Length = 316

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 150/308 (48%), Positives = 209/308 (67%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + A +  S  +++ +G   ++  L  GIT I + ++LD    +ELE+LLI +D+G+  A 
Sbjct: 7   EAAEKKRSLFQRMKEGLTRSTKNLSGGITGIFTKKKLDRATLDELEELLIGADLGLDAAA 66

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            I E +   RY K+VS + +   V++ I ++L P+ KP   D + +P VIL+ GVNG GK
Sbjct: 67  AIAEAVGKDRYDKEVSPEEIRKIVADEIAEVLKPVEKPLEIDATKKPFVILMTGVNGAGK 126

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGK+   +   G  VMLAAGDTFR+AA++QLK+W  R  A    ++ G DAA LAYE
Sbjct: 127 TTTIGKIGATLKAEGKSVMLAAGDTFRAAAVEQLKVWGTRIGAPVCATKTGGDAAGLAYE 186

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A  +A+ +  DVL+IDTAGRL N + LMA + K+IRV+++LDP  PH+ L VLDATTGQN
Sbjct: 187 ALARAKEEGTDVLLIDTAGRLQNKADLMAELEKVIRVMRKLDPETPHATLLVLDATTGQN 246

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QVE+F  VAG TGL+MTK+DGTARGG L+ I     +PV+ +GVGEGI+DL+PF A+
Sbjct: 247 ALNQVEIFGQVAGITGLVMTKLDGTARGGILVAIARKFGLPVHMIGVGEGIDDLQPFSAE 306

Query: 305 DFSAVITG 312
            ++  ITG
Sbjct: 307 AYARAITG 314


>gi|87121171|ref|ZP_01077062.1| cell division protein FtsY [Marinomonas sp. MED121]
 gi|86163663|gb|EAQ64937.1| cell division protein FtsY [Marinomonas sp. MED121]
          Length = 439

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 132/314 (42%), Positives = 196/314 (62%), Gaps = 7/314 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           + A   L+W +++  G + T   L  G+ ++I  S+++DD + EELE  L+ +D+GV   
Sbjct: 123 EDADSGLTWAQRVKAGLSRTRNGLGSGLANLIVGSKQIDDDLLEELETQLLMADVGVEAT 182

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNW-----DFSHRPHVILVV 117
           Q ++  L  K   K++     L   +   + +ML   +KP        +    P+VIL+V
Sbjct: 183 QSLIATLTEKMNRKELKDADALMAALKHELSQMLASSAKPLTLSEPEVEGKKTPYVILMV 242

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+KK    G KVMLAAGDTFR+AA++QL++W +R     V  + GSD
Sbjct: 243 GVNGVGKTTTIGKLTKKFQAEGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVVAQQTGSD 302

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           +A++ ++A   A+AK  DV+I DTAGRL N S LM  + K++RV+K+LD +APH V+ VL
Sbjct: 303 SASVIFDAIDSARAKGFDVVIADTAGRLQNKSNLMNELSKVVRVMKKLDDNAPHEVMLVL 362

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQNA+ Q ++F    G +G+ +TK+DGTA+GG +  I    +IP+ F+GVGE ++D
Sbjct: 363 DAGTGQNAISQAKLFSEAVGVSGITLTKLDGTAKGGIIFAIAKEFEIPIRFIGVGEQVDD 422

Query: 298 LEPFVAKDFSAVIT 311
           L  F A  F   + 
Sbjct: 423 LRAFDADVFVDALF 436


>gi|114571392|ref|YP_758072.1| signal recognition particle-docking protein FtsY [Maricaulis maris
           MCS10]
 gi|114341854|gb|ABI67134.1| signal recognition particle-docking protein FtsY [Maricaulis maris
           MCS10]
          Length = 309

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 129/308 (41%), Positives = 201/308 (65%), Gaps = 1/308 (0%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           ++ +   +  +L +G   +S KL + ++ I + R+LD    EELED+LI +D+G A A +
Sbjct: 1   MSEKKPGFFSRLAQGLKRSSSKLGDSVSAIFTKRKLDREALEELEDVLIAADLGAAAAMQ 60

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + E L   R+ K+VS + V   ++E++ + L PL +  +   + RP V+L VGVNG GKT
Sbjct: 61  VTERLAKDRFDKEVSDEEVREALAEVVAETLTPLEQGLDLSGA-RPQVVLFVGVNGSGKT 119

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GK++ K+   G   +LAAGDTFR+AAI+Q+ +W +R  +  +  EIG+DAA LA++A
Sbjct: 120 TTLGKIAVKLKREGRNPILAAGDTFRAAAIEQVSVWGERAKSPVIKREIGADAAGLAFDA 179

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             QA     DV++IDTAGRL N + LM  + K++RV+K+  P APH V+ VLD T G NA
Sbjct: 180 IDQADRDGHDVVLIDTAGRLQNKAELMDELRKVVRVIKKRMPDAPHHVVLVLDGTVGSNA 239

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F   +  TG++MTK+DGTA+GG L+ +    ++P++++G+GEG  DL+PF A+D
Sbjct: 240 VSQAQAFLEASEVTGVVMTKLDGTAKGGALVQVAEKFQLPIHYIGIGEGEEDLQPFSARD 299

Query: 306 FSAVITGC 313
           FS  + G 
Sbjct: 300 FSRALAGL 307


>gi|37680973|ref|NP_935582.1| signal recognition particle GTPase [Vibrio vulnificus YJ016]
 gi|37199723|dbj|BAC95553.1| signal recognition particle GTPase [Vibrio vulnificus YJ016]
          Length = 476

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V ++ V  +  K   
Sbjct: 20  FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVREFVARVKEKAVG 79

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 80  VEVSKSLTPGQEFIKIVQGELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 138

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 139 SKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSADQKPIDIANAAIDHAK 198

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 199 KKFFDVLIVDTAGRLAIDEAMMGEIQQLHSAIN------PVETLFVVDAMTGQDAANTAK 252

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 253 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 312

Query: 311 TGCLD 315
            G  D
Sbjct: 313 LGMGD 317


>gi|310641511|ref|YP_003946269.1| signal recognition gtpase (docking protein) [Paenibacillus polymyxa
           SC2]
 gi|309246461|gb|ADO56028.1| Signal recognition GTPase (Docking protein) [Paenibacillus polymyxa
           SC2]
          Length = 335

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 128/311 (41%), Positives = 192/311 (61%), Gaps = 2/311 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVA 61
            + +AS++ S  ++   G   T     E +TD+ I  +++D+   EELE++LI +D+GV 
Sbjct: 8   KESIASKTESVTKQFKDGLEKTRKGFVEKVTDLMIRRKKIDEEFYEELEEILIGADVGVN 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               ++E+L  +   + +     L  V SE + ++L                VIL VGVN
Sbjct: 68  TVMNLIEDLRGEVKKRKIEDASELQPVLSEKLSELLRGNDNSQLKMNPDGITVILFVGVN 127

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +    G KV+LAAGDTFR+ AI+QL++W  R   + +  + GSD AA
Sbjct: 128 GVGKTTTIGKLAHRFKQEGKKVLLAAGDTFRAGAIEQLEVWGQRAGVEVIKQQSGSDPAA 187

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+ ++VDVL+ DTAGRL N S LM  + K+ RV++R  P APH VL VLDAT
Sbjct: 188 VMFDAVQAAKQRQVDVLLCDTAGRLQNKSNLMEELNKIFRVIQREIPDAPHEVLLVLDAT 247

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q ++F   +G TGL++TK+DGTA+GG ++ I     +PV  +G+GE +NDL+P
Sbjct: 248 TGQNALNQAKLFGEKSGVTGLVLTKLDGTAKGGIVVAIRQELNLPVKLVGLGEKVNDLQP 307

Query: 301 FVAKDFSAVIT 311
           F ++ F   + 
Sbjct: 308 FDSEQFVHALF 318


>gi|189461330|ref|ZP_03010115.1| hypothetical protein BACCOP_01980 [Bacteroides coprocola DSM 17136]
 gi|189431859|gb|EDV00844.1| hypothetical protein BACCOP_01980 [Bacteroides coprocola DSM 17136]
          Length = 320

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 186/313 (59%), Gaps = 13/313 (4%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV    K
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLK 64

Query: 66  IVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGV 119
           I++ +  KR A+D  V+ Q +   + E I  +L       S+ F      +P+VI+VVGV
Sbjct: 65  IIKRI-EKRVAQDKYVNTQELNNILREEIAALLTENNTVDSEEFTVPEGKKPYVIMVVGV 123

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++GSD A
Sbjct: 124 NGVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVIKQKMGSDPA 183

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++    A A   DV+IIDTAGRLHN   LM  + K+  V++++ P APH +L VLD 
Sbjct: 184 SVAFDTLSSAVANNADVVIIDTAGRLHNKIGLMNELTKIKNVMQKVVPDAPHEILLVLDG 243

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA  Q + F        + +TK+DGTA+GG +I I    KIPV ++G+GEGI DL+
Sbjct: 244 STGQNAFEQAKQFTLATEVNAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIEDLQ 303

Query: 300 PFVAKDFSAVITG 312
            F  ++F   + G
Sbjct: 304 IFRRREFVDSLFG 316


>gi|172061768|ref|YP_001809420.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria MC40-6]
 gi|171994285|gb|ACB65204.1| signal recognition particle-docking protein FtsY [Burkholderia
           ambifaria MC40-6]
          Length = 386

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 183/308 (59%), Gaps = 7/308 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + AS   SW+ +L  G A T       IT +  + ++D+ + EELE  L+ SD GV   +
Sbjct: 84  QDASAKKSWLTRLKTGLAKT----GSSITGVFVNTKIDEDLYEELEAALLMSDAGVDATE 139

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++  L  K     ++  + +   + +L+ ++L PL K      +  P V+++ GVNG G
Sbjct: 140 YLLGALREKVKTGRLTDPQQVKSALHDLLVELLKPLEKSLMLGRAQ-PLVMMITGVNGAG 198

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K +      V+LAAGDTFR+AA +QL +W +R +   V  +   D AA+ +
Sbjct: 199 KTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVV-QQESGDPAAVIF 257

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K+DV++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQ
Sbjct: 258 DAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQ 317

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A
Sbjct: 318 NALTQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSA 377

Query: 304 KDFSAVIT 311
            +F+  + 
Sbjct: 378 VEFADALF 385


>gi|91228772|ref|ZP_01262682.1| signal recognition particle protein [Vibrio alginolyticus 12G01]
 gi|91187679|gb|EAS74001.1| signal recognition particle protein [Vibrio alginolyticus 12G01]
          Length = 460

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V ++ V  +  K   
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQTELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEEMMGEIKDLHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVVLTKVDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|254776215|ref|ZP_05217731.1| signal recognition particle protein [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 517

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 147/311 (47%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D   E    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALAGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKT++ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELIGILGGETRQLAF-AKTPPTVIMLAGLQGSGKTSLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-------GSDAAALAYE 184
           +  +   G   +L A D  R AA++QL++  +R                   D  A+A +
Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAQ 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA    +   +       P  +L VLDA  GQ+
Sbjct: 181 GLAEARAKHHDVVIVDTAGRLGIDDELMAQAAAIRDAID------PDEILFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   E F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             S+ I G  D
Sbjct: 295 RMSSRILGMGD 305


>gi|192973052|gb|ACF06951.1| signal recognition partical docking protein FtsY [uncultured
           Roseobacter sp.]
          Length = 395

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 128/275 (46%), Positives = 191/275 (69%), Gaps = 1/275 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E+LE+LLI SD+GV  A +I   L   R+ + +S   +   ++E I +++ 
Sbjct: 119 RRVLDDDMLEQLEELLISSDMGVDTAVRITANLAEGRFGRKLSTAEIKSALAEEIARVME 178

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+++P    ++ +P VILVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA+ Q
Sbjct: 179 PVARPLPI-YNKKPQVILVVGVNGSGKTTTIGKLASQFKKAGKSVVIAAGDTFRAAAVGQ 237

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W +R     + +  GSD A+LA++A  QA+    D+L+IDTAGRL N + LM  + K
Sbjct: 238 LQVWGERAGVPVMTAAEGSDPASLAFDAMTQAEKDGADLLMIDTAGRLQNRADLMEELSK 297

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +IRV+++ DP APH+ + VLDATTGQNA+ QVE+F  +A  TGL+MTK+DGTA+GG L+ 
Sbjct: 298 IIRVIRKKDPDAPHNTVLVLDATTGQNAVNQVEVFRKMADVTGLVMTKLDGTAKGGVLVS 357

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     +P++ +GVGE I+DL+ F  ++F+A +TG
Sbjct: 358 LADKFALPIHAIGVGEQIDDLDAFDPQEFAAALTG 392


>gi|121729492|ref|ZP_01682099.1| signal recognition particle protein [Vibrio cholerae V52]
 gi|121628611|gb|EAX61088.1| signal recognition particle protein [Vibrio cholerae V52]
          Length = 404

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V  +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V + +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A+    DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFXPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|297172255|gb|ADI23233.1| hypothetical protein [uncultured nuHF2 cluster bacterium
           HF0770_13K08]
          Length = 457

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 123/306 (40%), Positives = 189/306 (61%), Gaps = 1/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
             E  +++ +L KG   T  +L + + + ++  + +++ + ++LE++LI SDIG    Q+
Sbjct: 151 PDEIDTFLERLRKGVVKTRTQLLDNLAEAVLGRKEINEDLLDDLEEVLIGSDIGPETTQR 210

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           I++ +  K   +++S  +VL    +L  + +M  +         +P ++L VGVNGVGKT
Sbjct: 211 ILDAITEKVEREELSSPQVLQSEIQLEIQKIMSKTYAVPGTAERKPLILLFVGVNGVGKT 270

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGK++ +    G KV++ AGDTFR+AAI+QL  W+ R   D +  E GSD +A+ YE 
Sbjct: 271 TTIGKIAAQYRQQGKKVLMGAGDTFRAAAIEQLVEWSKRADCDIIQKEPGSDPSAVMYET 330

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++   +  DV+I DTAGRLH    LM  + KM+RV+++L P APH +L VLDATTGQNA
Sbjct: 331 VQKGIDEDYDVVICDTAGRLHTKKNLMEELKKMVRVIRKLIPDAPHEILLVLDATTGQNA 390

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q   F      TGLI+TK+DGT++GG +I IV    IPV ++GVGE + DL PF A+ 
Sbjct: 391 IFQTREFMEATDLTGLIITKLDGTSKGGVVIGIVNEFDIPVRYIGVGEQVEDLRPFDAQQ 450

Query: 306 FSAVIT 311
           F+  I 
Sbjct: 451 FTESIF 456


>gi|152978431|ref|YP_001344060.1| signal recognition particle protein [Actinobacillus succinogenes
           130Z]
 gi|150840154|gb|ABR74125.1| signal recognition particle protein [Actinobacillus succinogenes
           130Z]
          Length = 463

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKVVRTELEAAMGESNESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KV++ + D +R AAI QL+  A     DF  SE+  +   +   A  +A+
Sbjct: 121 AKFLHERHKKKVLVVSADVYRPAAIKQLETLAQAVHVDFFPSEVNQNPVDIVKAAVAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   L+      P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDGEMMDEIKQIHAALE------PVETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|312883945|ref|ZP_07743662.1| signal recognition particle protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368403|gb|EFP95938.1| signal recognition particle protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 459

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  ++ +  K   
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEENIKETLREVRMALLEADVALPVVRDFIKRIKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQSELESVMGDTNEVLNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK +S     KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLSEREKKKVLVVSADVYRPAAIKQLETLAADVGVDFFPSTAEQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRL  +  +MA I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 RKFYDVLLVDTAGRLAIDEQMMAEIQELHTAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF  +  ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPERVASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|260583609|ref|ZP_05851357.1| signal recognition particle protein [Granulicatella elegans ATCC
           700633]
 gi|260158235|gb|EEW93303.1| signal recognition particle protein [Granulicatella elegans ATCC
           700633]
          Length = 478

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    ++ +   +    E+   L+ +D+   V +  V ++  +  
Sbjct: 2   AFEGLSDRLQNAMGSVTKKGKITEADLKQMMREVRLALLEADVNFKVVKDFVRKVNERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E + +++     PF +     P V++++G+ G GKTT  GK
Sbjct: 62  GSNVLEALSPAQQVVKIVNEELTELMGGEQSPFQFS-PKPPTVVMMIGLQGAGKTTTAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      + +L A D +R AAIDQL+    + +          +   +A +A ++A
Sbjct: 121 LASFLAKHENKRPLLVAADVYRPAAIDQLQTLGKQLNYPVFSLGTDVNPVEIARQAIERA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  D++IIDTAGRLH +  LM  +  +  V        P+ +L V+D  TGQ+A+   
Sbjct: 181 TIEGRDLVIIDTAGRLHIDEALMEELQNIKAVAN------PNEILLVVDVMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+I+TK+DG  RGG  + I      P+ F G GE + D E F  +  ++ 
Sbjct: 235 ETFNERLDITGVILTKLDGDTRGGAALSIRSVTGKPIKFSGRGEKLEDFEIFYPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|90416161|ref|ZP_01224093.1| signal recognition particle GTPase [marine gamma proteobacterium
           HTCC2207]
 gi|90331886|gb|EAS47100.1| signal recognition particle GTPase [marine gamma proteobacterium
           HTCC2207]
          Length = 474

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + +  I     L +        E+   L+ +D+ + V +  +E++  +   
Sbjct: 4   FENLSDRLSDTLKKISGKASLSEANIQDSLREVRMALLEADVALPVVKDFIEQVKQRALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q+ L  V   + K++   ++  N   +  P +IL+ G+ G GKTT   KL
Sbjct: 64  QEVNRSLNPGQQFLKIVQAELEKVMGEQNESLNL-AAQPPAIILMAGLQGAGKTTSAAKL 122

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           S+ +      KVM+ + D +R AAI+QLK  A    A+F  S+I     A+   A   A+
Sbjct: 123 SRYLGEREKKKVMVVSADVYRPAAIEQLKTLAGEVGAEFFPSDISQKPVAIVNAAIDSAK 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K VDVLI+DTAGRL  +  +MA I ++           P   L V+DA  GQ+A+   +
Sbjct: 183 KKFVDVLIVDTAGRLAVDDEMMAEIKQIHAAAN------PIETLFVIDAMIGQDAVNTAK 236

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF  +  ++ I
Sbjct: 237 AFNDALPLTGVILTKVDGDARGGAALSVRQITGKPIKFLGVGEKTDALEPFHPERIASRI 296

Query: 311 TGCLD 315
            G  D
Sbjct: 297 LGMGD 301


>gi|255020743|ref|ZP_05292802.1| Signal recognition particle, subunit Ffh SRP54 [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969805|gb|EET27308.1| Signal recognition particle, subunit Ffh SRP54 [Acidithiobacillus
           caldus ATCC 51756]
          Length = 458

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 152/306 (49%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + KL +   ++    RL +D +R+ L D    L+ +D+ + V +  ++ +  +   
Sbjct: 2   FDNLTQKLSQSFRNLRGQGRLSEDNIRDALRDVRMALLEADVALPVVKDFIQAVRERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V + +  ++   +   +      P VIL+ G+ G GKTT   KL
Sbjct: 62  EEVTRSLTPGQVFIKIVHDELVALMGATNDRLDLQV-RPPAVILLAGLQGSGKTTTAAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      +V+L + D +R AA+DQL+        +   S+       +A +A  +AQ
Sbjct: 121 ALWLTEREKKRVLLVSTDVYRPAAMDQLRNLGRDIGVEVFPSDPSQAPLTIARDALAEAQ 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLI+DTAGRLH +  +M     +  V++         +L V+DA TGQ+A+   +
Sbjct: 181 RKVMDVLIVDTAGRLHVDEEMMREAKDLAAVVQPA------ELLFVVDAMTGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAV 309
            F A    TG+I+TK DG ARGG  + I      P+ F+GVGE +   LEPF     ++ 
Sbjct: 235 AFDAALPLTGVILTKADGDARGGAALSIRAVTGKPIKFIGVGEKVRKGLEPFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|149914432|ref|ZP_01902963.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           AzwK-3b]
 gi|149811951|gb|EDM71784.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           AzwK-3b]
          Length = 439

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 128/286 (44%), Positives = 191/286 (66%), Gaps = 1/286 (0%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L       +  R LDD + E+LE+LLI +D+GV  A ++   +   R  + +S Q +   
Sbjct: 152 LGRKEGKTVVRRVLDDDMLEQLEELLISADMGVDTALRVTANMAEGRMGRKLSGQEIKEL 211

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           +++ I +++ P+++P    +   P V+LVVGVNG GKTT IGKL+ +   AG  V++AAG
Sbjct: 212 LAQEITRIMEPVARPMPI-YPKTPQVVLVVGVNGSGKTTTIGKLASQFKAAGKSVVIAAG 270

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QL+IW  R     + +  GSD A+LA++A ++AQA   D+L+IDTAGRL N
Sbjct: 271 DTFRAAAVEQLQIWGGRAGVPVLTAPEGSDPASLAFDAIEKAQADGADLLMIDTAGRLQN 330

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + K++RV+++ DP APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+D
Sbjct: 331 RADLMEELAKIVRVIRKKDPGAPHNTLLVLDATTGQNALSQVETFQKLADVSGLVMTKLD 390

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           GTA+GG L+ +     +P++ +GVGE I+DL PF  +DF+A + G 
Sbjct: 391 GTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEDFAAALIGL 436


>gi|41409081|ref|NP_961917.1| hypothetical protein MAP2983c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397440|gb|AAS05300.1| Ffh [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 517

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 147/311 (47%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D   E    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALAGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKT++ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELIGILGGETRQLAF-AKTPPTVIMLAGLQGSGKTSLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-------GSDAAALAYE 184
           +  +   G   +L A D  R AA++QL++  +R                   D  A+A +
Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAQ 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA    +   +       P  +L VLDA  GQ+
Sbjct: 181 GLAEARAKHHDVVIVDTAGRLGIDDELMAQAAAIRDAID------PDEILFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   E F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             S+ I G  D
Sbjct: 295 RMSSRILGMGD 305


>gi|225374445|ref|ZP_03751666.1| hypothetical protein ROSEINA2194_00060 [Roseburia inulinivorans DSM
           16841]
 gi|225213683|gb|EEG96037.1| hypothetical protein ROSEINA2194_00060 [Roseburia inulinivorans DSM
           16841]
          Length = 450

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 152/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++ S  RL +       +E++  L+ +D+   V ++ V+++  +  
Sbjct: 2   AFDSLSEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKQFVKDVQERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +            VI++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEEMVKLMGSETTEIKLQPGKALTVIMMEGLQGAGKTTTAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G KV+L A D +R  AI+QL+I  ++   +            +A  A + A 
Sbjct: 122 LAGKFKLKGKKVLLTACDIYRPGAIEQLQINGEKQGVEVFSMGDKIKPVNIAKAAIEHAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             + +++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+   +
Sbjct: 182 KNEFNIVILDTAGRLHIDDDMMAELQEIKENVT------VHQTVLVVDAMTGQDAVNVAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           MF    G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 MFDEKVGIDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|153003590|ref|YP_001377915.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           sp. Fw109-5]
 gi|152027163|gb|ABS24931.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           sp. Fw109-5]
          Length = 465

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 122/304 (40%), Positives = 180/304 (59%), Gaps = 8/304 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + L  G   T       +  + S  +L DD V  +LE++L  +DIGV  A +++E    +
Sbjct: 162 KTLAAGLEKTRGGFMARLNALFSGGKLVDDAVLADLEEVLFTADIGVRTATRLLESARER 221

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLM-----PLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
              K++S    L D + E I ++L        ++P     + RP V++VVGVNG GKTT 
Sbjct: 222 VRRKELSDPERLKDALREEIARILALDGQPAAARPLELGPA-RPWVVMVVGVNGSGKTTT 280

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ K+   G +V+L AGDTFR+AA +QL+IWA+R  A  V  + G+D A++ +EA +
Sbjct: 281 IGKLASKLQAEGKRVLLGAGDTFRAAAGEQLEIWAERVGAPIVRGKEGADPASVCFEAVQ 340

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +      DV++ DTAGRLH  + LM  + K+ RV+ +    APH VL VLD+T GQNA+ 
Sbjct: 341 RGAQDGADVVLCDTAGRLHTKAPLMEELKKVKRVIGKAVDGAPHEVLLVLDSTNGQNAIA 400

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   FH   G TG+++TK+DGTA+GG +I I     IPV ++GVGE + DL+ FV  +F 
Sbjct: 401 QARQFHEALGVTGIVLTKIDGTAKGGVIIGICDELGIPVRYVGVGESVADLKAFVPAEFV 460

Query: 308 AVIT 311
             + 
Sbjct: 461 RALF 464


>gi|157960876|ref|YP_001500910.1| signal recognition particle protein [Shewanella pealeana ATCC
           700345]
 gi|157845876|gb|ABV86375.1| signal recognition particle protein [Shewanella pealeana ATCC
           700345]
          Length = 457

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNSVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   +   +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELENAMGEANEALDLS-AQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK +       V++ + D +R AAI QL+  A      F  S++      +A  A   A+
Sbjct: 121 SKFLREREKKSVLVVSADVYRPAAIKQLETLAAEVDVQFFPSDVSQKPVDIANAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDEAMMDEIKELHAAVK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LE F     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEAFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|116492613|ref|YP_804348.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pediococcus
           pentosaceus ATCC 25745]
 gi|116102763|gb|ABJ67906.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pediococcus
           pentosaceus ATCC 25745]
          Length = 476

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++  T++    ++ +        E+   L+ +D+   V ++ V+ +  +  
Sbjct: 2   AFEGLTERLQKTFTNLRKKGKVTEADLRDTMREIRLALLEADVNFKVVKQFVKTVRDQAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             D+       Q+++  V++ + KM+     P N      P +I++ G+ G GKTT  GK
Sbjct: 62  GSDILDGLNPAQQIVKLVNDELIKMMGTEDAPLNKS-PKIPTIIMMSGLQGAGKTTTTGK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+ +    + +L A D +R AAIDQL     +            +   +     +QA
Sbjct: 121 LALKLKNEQKARPLLIAADVYRPAAIDQLVQVGQQIDVPVYQEGTDVNPVDIVRHGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D + IDTAGRL  +  LM  +  +  +        P  +L V+DA TGQNA+   
Sbjct: 181 AENKNDYVFIDTAGRLQIDEKLMQELADIKAL------AHPDEILLVVDAMTGQNAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+I+TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 235 EGFNEKLDITGVILTKLDGDTRGGAALSIRSVTGKPIKFVGQGEKMEDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|323705465|ref|ZP_08117040.1| signal recognition particle protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535367|gb|EGB25143.1| signal recognition particle protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 446

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL++    +    +L +  V+E +++    L+ +D+   V ++ +  +  K  
Sbjct: 2   AFESLTGKLQDIFKKLRGKGKLSEKDVKEAMKEVKIALLEADVNFKVVKEFINTVTEKSL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V++ +  ++       N+     P VI++VG+ G GKTT  GK
Sbjct: 62  GQEVMESLTPAQHVIKIVNDELTALMGSKESKINFS-DKPPTVIMMVGLQGSGKTTTSGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G   +L A D +R AAI QL++     +         +    +A  +   A+
Sbjct: 121 LANYLRSKGKSPVLVACDIYRPAAIKQLQVVGSSINVPVFSMGDKTSPVDIAKASIDFAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRLH +  LM  +  +       D   P  +L V+DA TGQ+ +   E
Sbjct: 181 NNNYNVVIIDTAGRLHVDEELMDELKNIK------DAVNPDEILLVVDAMTGQDVVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+I+TK+DG  RGG  + +    + P+ F+  GE   D+E F     ++ I
Sbjct: 235 SFNEKLDIDGVILTKLDGDTRGGAALSVKAVTRKPIKFIASGEKFTDIEVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|308068623|ref|YP_003870228.1| cell division protein ftsY-like protein [Paenibacillus polymyxa
           E681]
 gi|305857902|gb|ADM69690.1| Cell division protein ftsY-like protein [Paenibacillus polymyxa
           E681]
          Length = 338

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 127/311 (40%), Positives = 193/311 (62%), Gaps = 2/311 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVA 61
            + +A+++ S  ++   G   T     E +TD+ I  +++D+   EELE++LI +D+GV 
Sbjct: 8   KESIANKTESVTKQFKDGLEKTRKGFVEKVTDLMIRRKKIDEEFYEELEEILIGADVGVN 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               ++E+L  +   + +     L  V SE + ++L                VIL VGVN
Sbjct: 68  TVMNLIEDLREEVKKRKIEDASELQPVLSEKLSELLRGNDNSQLKMSPDGITVILFVGVN 127

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +    G KV+LAAGDTFR+ AI+QL++W +R   + +  + GSD AA
Sbjct: 128 GVGKTTTIGKLAHRFKQEGKKVLLAAGDTFRAGAIEQLEVWGERAGVEVIKQQSGSDPAA 187

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+ ++VDVL+ DTAGRL N S LM  + K+ RV++R  P APH VL VLDAT
Sbjct: 188 VMFDAVQAAKQRQVDVLLCDTAGRLQNKSNLMEELNKIFRVIQREIPDAPHEVLLVLDAT 247

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q ++F   +G TGL++TK+DGTA+GG ++ I     +PV  +G+GE +NDL+P
Sbjct: 248 TGQNALNQAKLFGEKSGVTGLVLTKLDGTAKGGIVVAIRQELNLPVKLVGLGEKVNDLQP 307

Query: 301 FVAKDFSAVIT 311
           F ++ F   + 
Sbjct: 308 FDSEQFVHALF 318


>gi|326803884|ref|YP_004321702.1| signal recognition particle-docking protein FtsY [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650906|gb|AEA01089.1| signal recognition particle-docking protein FtsY [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 341

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 118/304 (38%), Positives = 172/304 (56%), Gaps = 8/304 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             K  KG   T     E + D+ +  R +D+   ++LE+ LI SD+G  +   + + +  
Sbjct: 34  FEKYDKGVEKTRKSFSERMNDLFAGFREVDEEFFDDLEEALITSDVGFDMTLALSDAVRE 93

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-----PHVILVVGVNGVGKTTV 127
           +   ++V+    +   + +I +M+    K  +   S +     P V+L VGVNGVGKTT 
Sbjct: 94  EVQRRNVTKGEDVK--NTVIEEMVKIYEKGQDGSVSLKENPDGPTVMLFVGVNGVGKTTT 151

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I K++      G KV+LAAGDTFR+ A++QL  W  R  A  V  +   D +A+ Y+A  
Sbjct: 152 IAKVAHHYISQGKKVLLAAGDTFRAGAVEQLNTWGQRVGAPVVSGKANGDPSAVVYDAVH 211

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A  +  D L+IDTAGRL N   LM  + KM RV+KR  P APH  L VLDATTGQNAL 
Sbjct: 212 KAVNEDYDYLLIDTAGRLQNKKNLMNELDKMNRVIKREIPDAPHETLLVLDATTGQNALV 271

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+     TGL++TK+DGTARGG +  I     +PV  +G+GEG++DL+PF  + F 
Sbjct: 272 QAKEFNKTVDITGLVLTKLDGTARGGVIFAIRYELDLPVKLIGLGEGMDDLQPFDGEKFI 331

Query: 308 AVIT 311
             + 
Sbjct: 332 YQLV 335


>gi|296133560|ref|YP_003640807.1| signal recognition particle-docking protein FtsY [Thermincola sp.
           JR]
 gi|296032138|gb|ADG82906.1| signal recognition particle-docking protein FtsY [Thermincola
           potens JR]
          Length = 304

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 133/303 (43%), Positives = 193/303 (63%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL +    T     E I  ++   +++D+ + EELE+ LI+SD+G+  A ++VEE
Sbjct: 1   MGFFSKLKEKLTKTREGFVEKIESLVTGRKKIDEELYEELEEALIQSDVGINTALELVEE 60

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   + V     L   + E+I ++LM        +   +P+VI+VVGVNGVGKTT I
Sbjct: 61  LRRRVKERKVEDAAELKNILQEIITEVLMDDESRLELE-KGKPNVIMVVGVNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ ++   G KV+LAAGDTFR+AAIDQL+IW++R   D +  +  +D AA+ ++A + 
Sbjct: 120 GKLAYQIKVGGRKVLLAAGDTFRAAAIDQLEIWSNRVGCDIIKHKENADPAAVVFDAIQA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLIIDTAGRLH  S LM  + K+ RV+ R  P APH VL VLDATTGQNA+ Q
Sbjct: 180 ARARNIDVLIIDTAGRLHTKSNLMEELKKVYRVINREMPDAPHEVLLVLDATTGQNAISQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+++TK+DGTA+GG +I I     +PV  +GVGE I DL PF   +F  
Sbjct: 240 AKLFGEAVGVTGIVLTKLDGTAKGGVIIGIKKELDVPVKLIGVGEQIEDLRPFKPGEFVE 299

Query: 309 VIT 311
            + 
Sbjct: 300 ALF 302


>gi|21672318|ref|NP_660385.1| cell division protein FtsY [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25090363|sp|Q8KA77|FTSY_BUCAP RecName: Full=Cell division protein ftsY homolog
 gi|21622918|gb|AAM67596.1| cell division protein FtsY [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 351

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 190/309 (61%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q + ++ + ++ KL      T     + I+ I  S+++DD   EELED ++ SDIGV   
Sbjct: 42  QNIDNKKIDFLFKLKNSLNKTKQFFGDSISRIFLSKKIDDAFFEELEDTMLLSDIGVHTT 101

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +I+ +L+     K++     +Y  + E ++ +L  + KP     +H P VILVVG+NG 
Sbjct: 102 DQIISKLINDATHKELKNPEKVYFLLKEHMYSILNRVEKPLKIS-NHTPFVILVVGINGT 160

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT + KL+KK   AG  VMLAA DTFR+A I+QL+I   R +   +    GSD A++A
Sbjct: 161 GKTTTVSKLAKKYKLAGKSVMLAAADTFRAAGIEQLQILGKRNNIPVISQSSGSDPASVA 220

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K A +KK+DVLIIDTAGRLHN   L+  + KM+RV+K+L+  APH ++ ++DA  G
Sbjct: 221 FDAVKSAISKKIDVLIIDTAGRLHNKLHLLEELKKMVRVIKKLNLSAPHEIMLIIDACNG 280

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN ++Q EMFH     TGL++TK+DGTA+GG +  +     IP+ ++G+GE   DL  F 
Sbjct: 281 QNTIKQTEMFHKAINLTGLVITKLDGTAKGGVIFSLANQFLIPIRYIGIGEKTTDLVVFN 340

Query: 303 AKDFSAVIT 311
           + DF   I 
Sbjct: 341 SNDFIKSIF 349


>gi|291288128|ref|YP_003504944.1| signal recognition particle-docking protein FtsY [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885288|gb|ADD68988.1| signal recognition particle-docking protein FtsY [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 380

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 140/309 (45%), Positives = 200/309 (64%), Gaps = 4/309 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVA 63
           +  +E   + ++L +G + TS KL  G+  I S ++ +D+ + EELE+L I SD+GV+  
Sbjct: 66  EKPAEKPGFFKRLKQGLSKTSGKLVGGMETIFSGKKVIDEDLLEELEELFITSDVGVSTT 125

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGV 122
            KI++ +  +   K +   + L   + L  ++L  L  P   +    +P+VILV GVNG 
Sbjct: 126 MKIIDNVRDELSRKALKNPQELK--ASLRKQILNILDIPNELNTTDDKPYVILVAGVNGA 183

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I K++K+  + GL   LAAGDTFR+AAIDQL +WA R     V    GSD+AA+ 
Sbjct: 184 GKTTSIAKMAKRFKEQGLSTCLAAGDTFRAAAIDQLCVWAKRVDVPVVKQSEGSDSAAVI 243

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A +  ++KK+DVLI DTAGRLHN   LM  + K++R+ KR  P APH VL VLDAT+G
Sbjct: 244 FDAIQSCKSKKIDVLIADTAGRLHNKFNLMKEMEKIVRIAKRELPDAPHEVLLVLDATSG 303

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q + FH   G TGL++TK+DGTA+GG +I IV   +IPV F+G GEGI+D++PF 
Sbjct: 304 QNALSQAQKFHEDIGITGLVLTKLDGTAKGGAVIGIVDELQIPVKFIGFGEGIDDMKPFS 363

Query: 303 AKDFSAVIT 311
           A+DF   + 
Sbjct: 364 AEDFVNALF 372


>gi|262393308|ref|YP_003285162.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. Ex25]
 gi|269966295|ref|ZP_06180383.1| Signal recognition particle GTPase [Vibrio alginolyticus 40B]
 gi|262336902|gb|ACY50697.1| signal recognition particle subunit Ffh SRP54 [Vibrio sp. Ex25]
 gi|269829092|gb|EEZ83338.1| Signal recognition particle GTPase [Vibrio alginolyticus 40B]
          Length = 460

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V ++ V  +  K   
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQTELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEEMMGEIKDLHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVVLTKVDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|257055023|ref|YP_003132855.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Saccharomonospora viridis DSM 43017]
 gi|256584895|gb|ACU96028.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Saccharomonospora viridis DSM 43017]
          Length = 515

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 149/307 (48%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + ++    +L D   +    E+   L+ +D+ + V ++ ++ +  +   
Sbjct: 5   FDTLSDRLTSVLQNLRGKGKLSDADIDATAREIRIALLEADVALPVVREFIKHVKERAKG 64

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++  N      P VI++ G+ G GKTT+ GKL
Sbjct: 65  AEVSQALNPAQQVIKIVNEELIAILGGETRRLNL-AKTPPSVIMLAGLQGSGKTTLAGKL 123

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++ +   G   +L A D  R  A+ QL++  +R        E G+   D   +A+ + ++
Sbjct: 124 ARWLKKQGHTPLLVACDLQRPNAVTQLQVVGERAGVTTFAPEPGNGVGDPVDVAHRSIEE 183

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+  + DV+I+DTAGRL  +  +M     +   +       P   L V+DA  GQ+A+  
Sbjct: 184 ARRAQHDVVIVDTAGRLGVDEEMMRQAADIRDAIS------PDETLFVVDAMIGQDAVTT 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G TG+++TK+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 238 AEAFRDGVGFTGVVLTKLDGDARGGAALSVRHVTGKPILFASNGEKLEDFDVFHPDRMAS 297

Query: 309 VITGCLD 315
            I G  D
Sbjct: 298 RILGMGD 304


>gi|83644605|ref|YP_433040.1| signal recognition particle protein [Hahella chejuensis KCTC 2396]
 gi|83632648|gb|ABC28615.1| signal recognition particle protein [Hahella chejuensis KCTC 2396]
          Length = 460

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L + +  I    +L +        E+   L+ +D+ + V ++ V+ +  K   
Sbjct: 2   FDSLTERLSDSLKKITGQAKLTEDNIKDTLREVRMALLEADVALPVVKEFVDSVKAKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V   +  ++   ++  N +    P VIL+ G+ G GKTT +GKL
Sbjct: 62  QEVMRSLTPGQEFIRVVQNELIAVMGRANEDLNLNC-QPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +       VM+ + D +R AAI QL+  A     +F  S    D   +A  A  +A+
Sbjct: 121 ARFLKERRKKSVMVVSADVYRPAAIKQLETLAGDVGVNFFPSTADQDPVDIASAAIAEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+I+DTAGRLH ++ +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LRFNDVVIVDTAGRLHIDADMMTEIKRLHAAVS------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ F+G+GE +  LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRSITGKPIKFMGMGEKVEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|238019505|ref|ZP_04599931.1| hypothetical protein VEIDISOL_01374 [Veillonella dispar ATCC 17748]
 gi|237864204|gb|EEP65494.1| hypothetical protein VEIDISOL_01374 [Veillonella dispar ATCC 17748]
          Length = 311

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 120/306 (39%), Positives = 176/306 (57%), Gaps = 7/306 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  ++  G   T     + +  I I   ++DD   ++LE +++ SD+G    + +++E+
Sbjct: 4   GFFDRIKDGLEKTRKSFVKNVESIVIGYAQIDDDFLDDLEAVMLTSDLGPKTTEYLMKEI 63

Query: 71  LTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                   ++    +    E  I +ML+           H P VILVVGVNGVGKTT I 
Sbjct: 64  RRGVTEGVINNTGDVMPFMEDRITEMLVDQEDEITL---HHPEVILVVGVNGVGKTTTIA 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+   +  G KV++AAGDTFR+AA DQL IWADR     V  + G+D AA+ Y+A + A
Sbjct: 121 KLANYYTKEGKKVIIAAGDTFRAAAADQLSIWADRVGVPIVKHKEGADPAAVVYDAMEAA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D++I+DTAGRLH    LM  + KM RV       APH  L VLD TTGQNA+ Q 
Sbjct: 181 KARNADLVIVDTAGRLHTKVNLMEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNAVSQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F       G+++TK+DGTA+GG +I I     +PV ++GVGEG++DL PF AK+F+  
Sbjct: 241 KLFGQAVPVNGIVVTKLDGTAKGGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKEFANA 300

Query: 310 IT--GC 313
           +   G 
Sbjct: 301 LFNKGM 306


>gi|330895929|gb|EGH28213.1| signal recognition particle protein [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330975468|gb|EGH75534.1| signal recognition particle protein [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 458

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVKPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|319944603|ref|ZP_08018871.1| signal recognition particle protein [Lautropia mirabilis ATCC
           51599]
 gi|319742140|gb|EFV94559.1| signal recognition particle protein [Lautropia mirabilis ATCC
           51599]
          Length = 578

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/315 (28%), Positives = 149/315 (47%), Gaps = 20/315 (6%)

Query: 14  IRKLTK---GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKI 66
             +L      F S S +L   +  +    RL +     +  E+   L+ +D+ + V +  
Sbjct: 107 FHRLRAQSLMFDSLSQRLARIVKTMRGEARLTEANTQEMLREIRIALLEADVALPVVRDF 166

Query: 67  VEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           + ++  K   ++V       Q ++  V   +  ++   +   +   +  P +IL+ G+ G
Sbjct: 167 IAQVKEKALGQEVLQSLTPGQALVGIVHNAMVDLIGGETAELDL-AAQPPAIILMAGLQG 225

Query: 122 VGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
            GKTT +GK+SK +  +   KV+  + D +R AAIDQLK  A +   DF  S+     A 
Sbjct: 226 AGKTTTVGKISKWLRENRKKKVLTVSCDVYRPAAIDQLKTVAQQAGVDFFPSQPDQKPAD 285

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A  A   A+    DVLI+DTAGRL  +  +M  I  +       D   P   L V+DA 
Sbjct: 286 IARAAVDWAKNHYHDVLIVDTAGRLGIDQAMMDEIRLLH------DTLHPIETLFVVDAM 339

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ+A+   + F+     TG+++TK+DG +RGG  + +      P+ F+GVGE +  L+ 
Sbjct: 340 QGQDAVNTAKAFNDTLPLTGVVLTKLDGDSRGGAALSVKAITGKPIKFVGVGEKLTGLDV 399

Query: 301 FVAKDFSAVITGCLD 315
           F     +  I G  D
Sbjct: 400 FHPDRMANRILGMGD 414


>gi|86605764|ref|YP_474527.1| signal recognition particle protein [Synechococcus sp. JA-3-3Ab]
 gi|86554306|gb|ABC99264.1| signal recognition particle protein [Synechococcus sp. JA-3-3Ab]
          Length = 483

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 145/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+     +    ++ +        E+   L+ +D+ + V ++ +E++      
Sbjct: 2   FDALSEKLELAWRKLRGQDKITETNIQEALREVRRALLDADVNLQVVKQFIEDVRQAALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + K++   + P        P ++++VG+ G GKTT   KL
Sbjct: 62  AEVILGVTPDQQFIKIVHDELVKVMGEANVPI-AQAEQPPTIVVMVGLQGSGKTTTCAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L AGD +R AAIDQLK    +                +A +    A+ 
Sbjct: 121 ALYLRKQGKRPLLVAGDIYRPAAIDQLKTLGQQIQIPVFDLGKTD-PVEIARQGVAAARE 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D +I+DTAGRL  +  +MA + ++   ++      PH +L V+DA  GQ A    + 
Sbjct: 180 QGYDYVILDTAGRLQIDLEMMAELERIKAAVQ------PHEILLVVDAMIGQEAANLTQA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TK+DG +RGG  + I      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 234 FHERLGLTGTILTKLDGDSRGGAALSIRQVSGQPIKFVGVGEKVEALDPFYPDRMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|89053705|ref|YP_509156.1| signal recognition particle-docking protein FtsY [Jannaschia sp.
           CCS1]
 gi|88863254|gb|ABD54131.1| signal recognition particle-docking protein FtsY [Jannaschia sp.
           CCS1]
          Length = 381

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 133/312 (42%), Positives = 199/312 (63%), Gaps = 14/312 (4%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + +   +       +L      +S             R LDD + E+LE+LLI SD+GV 
Sbjct: 81  ATEPEPAAKPGLFGRL---LGRSSE----------PKRALDDDMLEQLEELLIASDMGVD 127

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +A ++   +   RY K +S   +   ++  I +++ P+++P    +   P V+LVVGVNG
Sbjct: 128 IALRVTANMAEGRYGKMLSATEIKELLASEITRVMEPVARPLPI-YPKTPQVVLVVGVNG 186

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKLS +   AG KV++AAGDTFR+AA++QL++W DR     + +  GSD AAL
Sbjct: 187 SGKTTTIGKLSSQFRAAGKKVVIAAGDTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPAAL 246

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A  +A+A   D+L+IDTAGRL N + LM  + K++RV+++ DP APH+ L VLDATT
Sbjct: 247 AYDAMVKAEADGADLLMIDTAGRLQNRADLMEELAKIVRVIRKKDPDAPHNTLLVLDATT 306

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNALRQVE+F  +A  +GL+MTK+DGTA+GG L+ +     +P++ +GVGE I+DL+PF
Sbjct: 307 GQNALRQVELFGQMADVSGLVMTKLDGTAKGGVLVALADKFGLPIHAIGVGEQIDDLQPF 366

Query: 302 VAKDFSAVITGC 313
             ++F+  + G 
Sbjct: 367 DPEEFADALVGL 378


>gi|332976619|gb|EGK13460.1| signal recognition particle protein [Desmospora sp. 8437]
          Length = 449

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    ++ +   +    E+   L+ +D+   V +  V ++  +  
Sbjct: 2   AFEGLSERLQSALAKLRGKGKVSEADVKVAMREVRLALLEADVNYKVVKDFVSKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E +  ++    +  N   + +P VIL+VG+ G GKTT  GK
Sbjct: 62  GQEVLKSLTPGQQVIKVVNEELSSLMGGTQEKLNL--TSKPSVILMVGLQGAGKTTTTGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L + +       +L AGD +R AAI QL++  D+                +A +   +A+
Sbjct: 120 LGRFLKKQNRHPLLVAGDVYRPAAIRQLEVLGDQVELPVFSMGDQESPVRIAVDGVAKAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D ++IDTAGRLH +  +M  +  +   ++      P  +L V+DA TGQ+A+   E
Sbjct: 180 EEGHDTVLIDTAGRLHIDETMMGELKAIREKVQ------PDEILLVVDAMTGQDAVNVAE 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+I+TK+DG  RGG  + +      PV F+G+GE ++ LEPF  +  ++ I
Sbjct: 234 SFNRELGLTGVILTKLDGDTRGGAALSVKSVTDCPVKFVGMGEKVDALEPFHPERMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|298500684|ref|ZP_07010487.1| signal recognition particle protein [Vibrio cholerae MAK 757]
 gi|297540465|gb|EFH76523.1| signal recognition particle protein [Vibrio cholerae MAK 757]
          Length = 461

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V  +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V + +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A+    DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  D  ++DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDAQLVDTAGRLAIDEQMMAEIQALHKAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|160892684|ref|ZP_02073474.1| hypothetical protein CLOL250_00214 [Clostridium sp. L2-50]
 gi|156865725|gb|EDO59156.1| hypothetical protein CLOL250_00214 [Clostridium sp. L2-50]
          Length = 324

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 120/317 (37%), Positives = 181/317 (57%), Gaps = 3/317 (0%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +A E   + ++L +G + T   + +  + +  +  +DD   EELE+  I +D+G    +K
Sbjct: 1   MAEEKKGFFKRLKEGLSKTRNSIVDSFSSVFGASHIDDDFYEELEETFIMADMGYETTEK 60

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGK 124
           ++E L  +     +       ++  +I+ +   +      +DF  +  VILV+GVNGVGK
Sbjct: 61  VIENLKERVKEARIKEPAACKEL--IINIIRDQMMVDESAYDFEKKKSVILVIGVNGVGK 118

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ +   +G KV++AA DTFR+AAIDQLK WADR   + +    G+D AA+ Y+
Sbjct: 119 TTTIGKLAAQYKKSGKKVLIAAADTFRAAAIDQLKTWADRAGVEMISHNEGADPAAVVYD 178

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+A+  D+L+IDTAGRLHN   LM  + KM R++ R  P A    L VLD TTGQN
Sbjct: 179 AVSAAKARNTDILLIDTAGRLHNKKNLMDELAKMRRIISRDYPDANVESLIVLDGTTGQN 238

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q   F  V    G+++TK+DGTA+GG  I I     +PV F+G+GE I+DL+ F   
Sbjct: 239 ALEQARQFSNVTEIDGIVITKLDGTAKGGIAIAIQAELNVPVKFIGIGEKIDDLQRFDPS 298

Query: 305 DFSAVITGCLDYGEEKI 321
            +   +    D    ++
Sbjct: 299 AYVEALFSGFDEDRSEL 315


>gi|237809533|ref|YP_002893973.1| signal recognition particle protein [Tolumonas auensis DSM 9187]
 gi|237501794|gb|ACQ94387.1| signal recognition particle protein [Tolumonas auensis DSM 9187]
          Length = 457

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL D        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FETLTERLSATLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVKEFVNRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   +  ++   ++  N   +  P ++L+ G+ G GKTT + KL
Sbjct: 62  QEVNKSLSPGQAFIKIVHGELISVMGEANQDLNL-ATQPPAILLMAGLQGAGKTTSVAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KVM+ + D +R AAI QL+  A+    +F  S      A +A  A   A+
Sbjct: 121 AKFLTERQKKKVMVVSADVYRPAAIKQLETLANDIGIEFFPSSTSQTPAEIAAAALDSAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH +S +M  I ++ + L       P   L V+DA TGQ+A    +
Sbjct: 181 KRYFDVLIVDTAGRLHVDSEMMEEIQQLHKQLN------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG ARGG  + +      P+ F+G+GE  + LEPF     ++ I
Sbjct: 235 AFSEALPLTGVILTKADGDARGGAALSVRHITGKPIKFIGMGEKTDALEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|160933328|ref|ZP_02080716.1| hypothetical protein CLOLEP_02173 [Clostridium leptum DSM 753]
 gi|156867205|gb|EDO60577.1| hypothetical protein CLOLEP_02173 [Clostridium leptum DSM 753]
          Length = 456

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   S KL      + S  +L +  V+E + +    L+ +D+   VA+   +++  +  
Sbjct: 2   AFDGLSEKLSAAFKRLRSKGKLSESDVKEAMREVRLALLEADVNYKVAKDFTQKVTERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q V+  V+E + +++   +   N+  S  P V+++ G+ G GKTT   K
Sbjct: 62  GSEVMESLTPAQMVIKIVNEELTELMGGTNARLNFP-SKPPLVLMMCGLQGSGKTTHSAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L + +   G + +L A D +R AAI QL++  ++            +   +A  A   A+
Sbjct: 121 LGRLLKSQGHRPLLVACDIYRPAAIQQLEVVGNKAGVPVFQMGT-ENPVKIAQAAVAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRLH +  LM  +  +       +   P  +L V+DA TGQ+A+   +
Sbjct: 180 DHGNDVVILDTAGRLHIDEDLMTELKNIK------NKVEPQEILLVVDAMTGQDAVNVAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +   +G+I+TK+DG  RGG  + +      P+ F G+GE + DLE F     ++ I
Sbjct: 234 SFNDLLEISGVILTKLDGDTRGGAALSVRAVTGKPIKFSGIGEKLEDLEAFHPDRMASRI 293

Query: 311 TGCLDY 316
            G  D 
Sbjct: 294 LGMGDM 299


>gi|188585994|ref|YP_001917539.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350681|gb|ACB84951.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 447

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
               S KL++    +    ++++  V+E + +    L+ +D+   V ++ V  +  +   
Sbjct: 2   LQRLSEKLQDTFGKLTGKGKVNEKDVKEAMREVRLALLEADVNYKVVKEFVNNVKERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + + +++       N+     P VI++ G+ G GKTT   KL
Sbjct: 62  EEVLESLTPGQQVIKIVRDELTQLMGGEVSEVNFS-DQPPTVIMLSGLQGTGKTTASAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +KK    G   ++ A DT R AAI QL++  ++T             A +A  A + A+ 
Sbjct: 121 AKKFKKDGKNPLMVACDTQRPAAIKQLQVLGEQTDIPVFSMGDKQHPADIAKGAVEHAKK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            ++DV+I+DTAGRLH +  LM  + ++           PH +L V+DA TGQ+A+   E 
Sbjct: 181 NQMDVVILDTAGRLHIDEDLMTELREV------ESSVEPHEILLVVDAMTGQDAVNVAER 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      +G++MTK+DG  RGG  + +      P+ F+G GE +++LE F     ++ I 
Sbjct: 235 FDQDLDLSGIVMTKLDGDTRGGAALSVKKVTGKPIKFIGTGEKVDELEVFHPDRLASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|228473872|ref|ZP_04058614.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228274713|gb|EEK13547.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 317

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 127/314 (40%), Positives = 184/314 (58%), Gaps = 17/314 (5%)

Query: 11  LSWIRKL---------TKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGV 60
           +++ +KL          KG   +     + +T  I    ++DD + +ELE +L+ SD+GV
Sbjct: 1   MNFFKKLFSSDKKETLDKGLEKSKTSFFDKLTRAIAGKSKVDDDILDELEGVLVSSDVGV 60

Query: 61  AVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVI 114
               KI+E +  KR A++  +    +   + E I  +L    +    DFS     +P+VI
Sbjct: 61  DTTLKIIERI-EKRVAQEKYLGTSELNRILREEIAALLSQTQRGEEVDFSVPSNKKPYVI 119

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +VVGVNG GKTT IGKL+ +    GLKV+L A DTFR+AAIDQL++WA+R     V  + 
Sbjct: 120 MVVGVNGAGKTTTIGKLAYQFKKKGLKVVLGAADTFRAAAIDQLQVWAERVGVPLVKQQT 179

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD A++AY+    A ++  DV+IIDTAGRLHN   LM  + K+ RV+++L P  P  +L
Sbjct: 180 GSDPASVAYDTLSSALSQGADVVIIDTAGRLHNKVNLMNELSKVKRVMQKLLPETPDEIL 239

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLD +TGQNA  Q + F        L +TK+DGTA+GG +I I    +IPV ++GVGEG
Sbjct: 240 LVLDGSTGQNAFEQAKQFTLATEVNALAITKLDGTAKGGVVIGISDQFQIPVKYIGVGEG 299

Query: 295 INDLEPFVAKDFSA 308
           I DL+ F   +F  
Sbjct: 300 IEDLQVFNKYEFVD 313


>gi|317129234|ref|YP_004095516.1| signal recognition particle protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315474182|gb|ADU30785.1| signal recognition particle protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 449

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  +  I    ++ +     +  E+   L+ +D+   V ++ +  +  +  
Sbjct: 2   AFEGLAERLQGTLNKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKQFISSVKERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E +  ++           S  P V+++VG+ G GKTT  GK
Sbjct: 62  GQEVLESLTPGQQVIKVVNEELTSLMGGEQSKIAV-ASKPPTVVMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ++ A D +R AAI QL+    +                +A  A ++A
Sbjct: 121 LANHLRKKHNRKPLMVAADIYRPAAIKQLETLGKQLDMPVFSMGDQVSPVEIAKNAMEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D ++IDTAGRLH +  LM  + ++  +       +P  +L V+DA TGQ+A+   
Sbjct: 181 KEEHHDYVLIDTAGRLHVDEELMGELEEIKAL------TSPDEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ LEPF     ++ 
Sbjct: 235 ESFNERLGITGVVLTKLDGDTRGGAALSIRSVTDTPIKFAGMGEKVDALEPFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|313892734|ref|ZP_07826315.1| signal recognition particle-docking protein FtsY [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442665|gb|EFR61076.1| signal recognition particle-docking protein FtsY [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 311

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 120/306 (39%), Positives = 176/306 (57%), Gaps = 7/306 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  ++ +G   T     + +  I I   ++DD   ++LE +++ SD+G    + ++ E+
Sbjct: 4   GFFDRIKEGLEKTRKSFVKNVESIVIGYAQIDDDFLDDLEAVMLTSDLGPKTTEYLMREI 63

Query: 71  LTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                   ++    +    E  I +ML+           H P VILVVGVNGVGKTT I 
Sbjct: 64  RRGVTEGIINNTGDVMPFMEDRITEMLVDQEDEITL---HHPEVILVVGVNGVGKTTTIA 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+   +  G KV++AAGDTFR+AA DQL IWADR     V  + G+D AA+ Y+A + A
Sbjct: 121 KLANYYTKEGKKVIIAAGDTFRAAAADQLSIWADRVGVPIVKHKEGADPAAVVYDAMEAA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D++I+DTAGRLH    LM  + KM RV       APH  L VLD TTGQNA+ Q 
Sbjct: 181 KARNADLVIVDTAGRLHTKVNLMEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNAVSQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F       G+++TK+DGTA+GG +I I     +PV ++GVGEG++DL PF AK+F+  
Sbjct: 241 KLFGQAVPVNGIVVTKLDGTAKGGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKEFANA 300

Query: 310 IT--GC 313
           +   G 
Sbjct: 301 LFNKGM 306


>gi|83814471|ref|YP_446277.1| signal recognition particle-docking protein FtsY [Salinibacter
           ruber DSM 13855]
 gi|294508208|ref|YP_003572266.1| Signal recognition particle GTPase [Salinibacter ruber M8]
 gi|83755865|gb|ABC43978.1| signal recognition particle-docking protein FtsY [Salinibacter
           ruber DSM 13855]
 gi|294344536|emb|CBH25314.1| Signal recognition particle GTPase [Salinibacter ruber M8]
          Length = 324

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 128/303 (42%), Positives = 186/303 (61%), Gaps = 6/303 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            KL +G   T       +  ++  +  +D  V +ELE++LI SD+GV     I++ +  +
Sbjct: 17  EKLEEGLDKTRDSFFGKLDRMVRGKDTVDAEVLDELEEILITSDVGVDTTLDIIDHVEAR 76

Query: 74  -RYAKDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVI 128
               + VS Q +   + + I ++++  S+     F+    ++PHVI+VVGVNGVGKTT I
Sbjct: 77  VAQDQYVSAQELNGLIRDEIARLMLEGSEERPADFDAPLPNQPHVIMVVGVNGVGKTTTI 136

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++ K   AG  V++ AGDTFR+AAI+QL+IWADR     +  + G+D AA+AY+  + 
Sbjct: 137 GKMAHKYRQAGKSVLMGAGDTFRAAAIEQLEIWADRAGVPLIKQKHGADPAAVAYDTIEA 196

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+  DV I+DTAGRLH    LM  + KM RV+ R  P APH VL VLDA+TGQNALRQ
Sbjct: 197 AEARDADVAIVDTAGRLHTKGGLMDELAKMKRVMGRKIPDAPHEVLLVLDASTGQNALRQ 256

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F      TGL +TK+DGTA+GG +I +    ++PV ++GVGE + DL+ F  K F  
Sbjct: 257 AEEFIDSVDVTGLALTKLDGTAKGGVVIGVSHQFQVPVKYIGVGEAVEDLQVFDRKGFVQ 316

Query: 309 VIT 311
            + 
Sbjct: 317 GLF 319


>gi|323144388|ref|ZP_08078996.1| signal recognition particle-docking protein FtsY [Succinatimonas
           hippei YIT 12066]
 gi|322415841|gb|EFY06567.1| signal recognition particle-docking protein FtsY [Succinatimonas
           hippei YIT 12066]
          Length = 507

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 124/305 (40%), Positives = 188/305 (61%), Gaps = 6/305 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           SE LS+  +L      T   +  G++  +  R++D+ + EELE  L+ +D+GV     ++
Sbjct: 204 SEKLSFFERLK----RTRENISMGLSSFMKGRKIDEDLYEELETALLTADLGVETTNFVI 259

Query: 68  EELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           E+L  +   +++    +L  ++ +++  +L P   P       +P VIL+VGVNG GKTT
Sbjct: 260 EKLREESKLRELHDAVLLKKNLKDILKNILKPCEIPLEV-TGKKPFVILMVGVNGAGKTT 318

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL++K  D GLKVMLAAGDTFR+AA++QLK W +R +   +    GSD+A++ ++A 
Sbjct: 319 TIGKLARKYQDLGLKVMLAAGDTFRAAAVEQLKEWGNRANVPVIAQATGSDSASVLFDAV 378

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+  DVLI DTAGRL N   LM  + K++RV+K++D   PH VL VLDATTGQNA+
Sbjct: 379 NAAKARNTDVLICDTAGRLQNKDNLMEELKKIVRVMKKIDEEVPHEVLLVLDATTGQNAV 438

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F      TG+ +TK+DGTA+GG +  +    K+P+ ++G+GE   DL PF A  F
Sbjct: 439 SQATLFGKAVPITGICLTKLDGTAKGGVIFTLADKFKLPIRYVGIGEKAEDLRPFKADIF 498

Query: 307 SAVIT 311
              + 
Sbjct: 499 VDALF 503


>gi|163814209|ref|ZP_02205601.1| hypothetical protein COPEUT_00363 [Coprococcus eutactus ATCC 27759]
 gi|158450658|gb|EDP27653.1| hypothetical protein COPEUT_00363 [Coprococcus eutactus ATCC 27759]
          Length = 448

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+     + S   L +D V+E   E++  L+ +D+   V +  V+ +  +  
Sbjct: 2   AFDSLSDKLQNVFKKLRSKGVLTEDDVKEAMKEVKRALLEADVNFKVVKSFVKSVSDRAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V         V+  V E + K++           S+   +I++ G+ G GKTT   K
Sbjct: 62  GEEVLKGLNPGHMVIKIVKEEMDKLMGSEMTEIKLRPSNEITIIMMCGLQGAGKTTTAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +  + G K +L A D +R AAI QL++  ++           +    +A  A + A 
Sbjct: 122 LAYQFKNKGKKPLLVACDVYRPAAIKQLQVNGEKVGVPVFAMGDNNKPLDIAKAAIQHAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++++ +DTAGRLH +  +M  + ++   L           +  +D+ TGQ+A+    
Sbjct: 182 KNNINLVFLDTAGRLHVDEDMMDELAEIKANLDIAY------TILTVDSMTGQDAVNVAT 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ + G+GE + DLEPF     ++ I
Sbjct: 236 TFNDKIGIDGVILTKLDGDTRGGAALSIKAVTGKPILYSGMGEKLTDLEPFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|300214422|gb|ADJ78838.1| Signal recognition particle protein [Lactobacillus salivarius CECT
           5713]
          Length = 479

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  I  +    ++ +     V  E+   L+ +D+   V +  V+ + ++  
Sbjct: 2   AFEGLTERLQNAIGKLRRKGKISESDVKEVMREIRLALLEADVNFKVVKDFVKTVRSRAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E + K++   + P N   +  P +I++VG+ G GKTT   K
Sbjct: 62  GAEVLESLTPAQQIVKIVNEELVKVMGEEAAPLNKS-AKIPTIIMMVGLQGAGKTTTASK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      +  + A D +R AAIDQLKI             +  D   +  +  ++A
Sbjct: 121 LANKLKKEKNARPFMIAADVYRPAAIDQLKILGKDIDVPVFSLGVDVDPVEIVRQGLEEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D +IIDTAGRL  +  LM  +  +  +        P  +L  +DA TGQNA+   
Sbjct: 181 KDKKNDYVIIDTAGRLQIDEKLMQELSSIKEL------AQPDEILLTVDAMTGQNAVEVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 235 KGFNDQLDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMTDLDVFYPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|227890693|ref|ZP_04008498.1| signal recognition particle protein [Lactobacillus salivarius ATCC
           11741]
 gi|227867631|gb|EEJ75052.1| signal recognition particle protein [Lactobacillus salivarius ATCC
           11741]
          Length = 482

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  I  +    ++ +     V  E+   L+ +D+   V +  V+ + ++  
Sbjct: 5   AFEGLTERLQNAIGKLRRKGKISESDVKEVMREIRLALLEADVNFKVVKDFVKTVRSRAI 64

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E + K++   + P N   +  P +I++VG+ G GKTT   K
Sbjct: 65  GAEVLESLTPAQQIVKIVNEELVKVMGEEAAPLNKS-AKIPTIIMMVGLQGAGKTTTASK 123

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      +  + A D +R AAIDQLKI             +  D   +  +  ++A
Sbjct: 124 LANKLKKEKNARPFMIAADVYRPAAIDQLKILGKDIDVPVFSLGVDVDPVEIVRQGLEEA 183

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D +IIDTAGRL  +  LM  +  +  +        P  +L  +DA TGQNA+   
Sbjct: 184 KDKKNDYVIIDTAGRLQIDEKLMQELSSIKEL------AQPDEILLTVDAMTGQNAVEVA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 238 KGFNDQLDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMTDLDVFYPDRMASR 297

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 298 ILGMGDM 304


>gi|313888484|ref|ZP_07822151.1| signal recognition particle protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845513|gb|EFR32907.1| signal recognition particle protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 445

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 153/304 (50%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+  + ++    +L     D    E++  L+ +D+   V +  V+ +  +   
Sbjct: 3   FESLSDKLQNTLQNLRGKGKLSEKDIDAAMREVKLALLEADVNFRVVKDFVKTVKERALG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K+V       Q+V+  V+E +  ++   +     DFS +P VI++ G+ G GKTT  GKL
Sbjct: 63  KEVLESLTPGQQVIKIVNEELTSLMG--TSEVKIDFSKKPTVIMMCGLQGAGKTTTSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G + +L A D +R AAI QL++  +                 ++  A + A+ 
Sbjct: 121 ANKLKKDGKRPLLVACDVYRPAAIKQLQVVGESVDTPVFTMGDKISPVDISKAALEHAKK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRLH +  LM  +  +   L+      P  VL VLDA TGQ+A+   + 
Sbjct: 181 NGNDVVIIDTAGRLHIDEALMKELQDIHEALE------PSEVLLVLDAMTGQDAVNVADT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+I+TK+DG ARGG  + I     +P+ F+  GE ++++E F     ++ I 
Sbjct: 235 FDDMLKLTGVILTKLDGDARGGAALSIRSVTDVPIKFIASGEKMDNIEVFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|330446979|ref|ZP_08310630.1| signal recognition particle protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491170|dbj|GAA05127.1| signal recognition particle protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 455

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL D        E+   L+ +D+ + V ++ V+ +  +   
Sbjct: 2   FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  +      P VIL+ G+ G GKTT +GKL
Sbjct: 62  TEVSKSLTPGQEFIKIVQAELELVMGEENEGLDLSC-QPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A     DF  S +      +A  A +  +
Sbjct: 121 GKLLKERDSKKVLVVSADVYRPAAIKQLETLAGDIGIDFFPSNVEQKPVEIAKAALEHGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRLH +  +M  I  + + L       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVVIVDTAGRLHVDEEMMDEIKDVHQTLN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPNRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|291546251|emb|CBL19359.1| signal recognition particle-docking protein FtsY [Ruminococcus sp.
           SR1/5]
          Length = 312

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 127/308 (41%), Positives = 179/308 (58%), Gaps = 4/308 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +A E   + ++L  G   T   +  G   I S    +DD   EELE++LI  DIG+    
Sbjct: 1   MAEEKKGFFKRLVSGLTKTRDNIVAGFDSIFSGFSSIDDDFYEELEEILIMGDIGINATT 60

Query: 65  KIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            I+E L  +   + +    +    + + I K +   S    ++F +R  VILV+GVNGVG
Sbjct: 61  SILEHLKEQVAEQHIKEPSQCKQLLIDSIKKQMQVESTE--YEFENRKSVILVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ K+ D G KV+L A DTFR+AA +QL  WA+R   + +  + G+D A++ Y
Sbjct: 119 KTTSVGKLAGKLKDQGKKVILGAADTFRAAAGEQLTQWANRAGVEIIGGQDGADPASVVY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+  D+LI DTAGRLHN   LM  + K+ R+L+R  P A    L VLD TTGQ
Sbjct: 179 DAVAAAKARNADILICDTAGRLHNKKNLMEELRKIYRILEREYPEAYLETLVVLDGTTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F  VA  TG+I+TK+DGTA+GG  + I     IPV ++GVGE I+DL+ F A
Sbjct: 239 NALSQARQFAEVANVTGIILTKLDGTAKGGIAVAIQSELDIPVKYIGVGESIDDLQKFDA 298

Query: 304 KDFSAVIT 311
             F   + 
Sbjct: 299 DAFVNALF 306


>gi|257095545|ref|YP_003169186.1| signal recognition particle-docking protein FtsY [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048069|gb|ACV37257.1| signal recognition particle-docking protein FtsY [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 329

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 126/312 (40%), Positives = 188/312 (60%), Gaps = 3/312 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++    A  + SW ++L  G A T  +    +  + S  ++DD + EELE LL+ SD+G+
Sbjct: 19  IAEPTEAPTASSWRQRLKSGLARTRAQFGGKLKSLFSRGKVDDELLEELEALLLTSDVGL 78

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              Q ++ +L  +     +     +   +SE ++++L PL +  +   SHRP +I++ GV
Sbjct: 79  DATQHLLYQLKMRAKRDKLETPEAIQHALSEALYELLRPLEEALDLS-SHRPFIIMIAGV 137

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+K     GL V+LAAGDTFR+AA +QL+ W +R +   +  +   D A
Sbjct: 138 NGAGKTTSIGKLAKHFQAHGLSVLLAAGDTFRAAAREQLQTWGERNNVTVIAQQ-SGDPA 196

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+A+ +DV++ DTAGRL     LM  I K+ RV+++ DP APH  L VLDA
Sbjct: 197 AVIFDAIAAAKARGIDVVLADTAGRLPTQLHLMDEIAKVRRVIQKADPTAPHETLLVLDA 256

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           T GQN L+QV  F      +GL++TK+DGTA+GG +  I      PV F+GVGEGI+DL 
Sbjct: 257 TFGQNTLQQVMAFDKAIQVSGLVLTKLDGTAKGGVVAAIARQCPKPVRFIGVGEGIDDLR 316

Query: 300 PFVAKDFSAVIT 311
           PF A+DF   + 
Sbjct: 317 PFSARDFVDALF 328


>gi|149909415|ref|ZP_01898070.1| signal recognition particle-docking protein FtsY [Moritella sp.
           PE36]
 gi|149807525|gb|EDM67474.1| signal recognition particle-docking protein FtsY [Moritella sp.
           PE36]
          Length = 451

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 127/315 (40%), Positives = 195/315 (61%), Gaps = 1/315 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S          +  +L +G + T   +  G       + +DD + EELE+ L+ +D+GVA
Sbjct: 135 SEVDEPVNKDKFFTRLKRGLSRTKGNIGSGFKSFFRGKHIDDDLFEELEEQLLIADLGVA 194

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             ++I++ L  +   K +     LYD + + +  ML  + +P   D +++PHVIL+VGVN
Sbjct: 195 TTKRIIDNLTQQASRKQLKDAEALYDILKKDMADMLHKVEQPLVIDSNNKPHVILMVGVN 254

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++KK    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A+
Sbjct: 255 GVGKTTTIGKMAKKFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNGIPVVAQHTGADSAS 314

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A AK VDVLI DTAGRL N + LM  + K++RV+++ D  APH ++  +DA 
Sbjct: 315 VLFDAMQSATAKDVDVLIADTAGRLQNKAHLMDELKKVVRVMRKHDATAPHEIMLTIDAG 374

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q ++F    G TG+ +TK+DGTA+GG +  +    +IP+ F+G+GEGI+DL  
Sbjct: 375 TGQNALSQAQLFKEAVGLTGITITKLDGTAKGGVIFAVADKFEIPIRFIGIGEGIDDLRT 434

Query: 301 FVAKDFSAVITGCLD 315
           F +++F   +    D
Sbjct: 435 FNSEEFIEALFSSED 449


>gi|237716498|ref|ZP_04546979.1| recognition particle-docking protein FtsY [Bacteroides sp. D1]
 gi|262408096|ref|ZP_06084644.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           2_1_22]
 gi|294809490|ref|ZP_06768193.1| signal recognition particle-docking protein FtsY [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444145|gb|EEO49936.1| recognition particle-docking protein FtsY [Bacteroides sp. D1]
 gi|262354904|gb|EEZ03996.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           2_1_22]
 gi|294443308|gb|EFG12072.1| signal recognition particle-docking protein FtsY [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 319

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 184/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I++ +  +  A K V+ Q +   + + I  +L   +      F+   + +P+VI+VVGVN
Sbjct: 65  IIKRIEKRAAADKYVNTQELNLILRDEIAALLTENNSNDVADFDVPITRKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY+    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P+AP  VL VLD +
Sbjct: 185 VAYDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F   +F   + G
Sbjct: 305 FRKNEFVDSLFG 316


>gi|90961606|ref|YP_535522.1| Signal recognition particle protein [Lactobacillus salivarius
           UCC118]
 gi|90820800|gb|ABD99439.1| Signal recognition particle protein [Lactobacillus salivarius
           UCC118]
          Length = 482

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  I  +    ++ +     V  E+   L+ +D+   V +  V+ + ++  
Sbjct: 5   AFEGLTERLQNAIGKLRRKGKISESDVKEVMREIRLALLEADVNFKVVKDFVKTVRSRAI 64

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E + K++   + P N   +  P +I++VG+ G GKTT   K
Sbjct: 65  GAEVLESLTPAQQIVKIVNEELVKVMGEEAAPLNKS-AKIPTIIMMVGLQGAGKTTTASK 123

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      +  + A D +R AAIDQLKI             +  D   +  +  ++A
Sbjct: 124 LANKLKKEKNARPFMIAADVYRPAAIDQLKILGKDIDVPVFSLGVDVDPVEIVRQGLEEA 183

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D +IIDTAGRL  +  LM  +  +  +        P  +L  +DA TGQNA+   
Sbjct: 184 KDKKNDYVIIDTAGRLQIDEKLMQELSSIKEL------AQPDEILLTVDAMTGQNAVEVA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 238 KGFNDQLDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMTDLDVFYPDRMASR 297

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 298 ILGMGDM 304


>gi|269797769|ref|YP_003311669.1| signal recognition particle-docking protein FtsY [Veillonella
           parvula DSM 2008]
 gi|282849043|ref|ZP_06258432.1| signal recognition particle-docking protein FtsY [Veillonella
           parvula ATCC 17745]
 gi|294793533|ref|ZP_06758670.1| signal recognition particle-docking protein FtsY [Veillonella sp.
           3_1_44]
 gi|269094398|gb|ACZ24389.1| signal recognition particle-docking protein FtsY [Veillonella
           parvula DSM 2008]
 gi|282581318|gb|EFB86712.1| signal recognition particle-docking protein FtsY [Veillonella
           parvula ATCC 17745]
 gi|294455103|gb|EFG23475.1| signal recognition particle-docking protein FtsY [Veillonella sp.
           3_1_44]
          Length = 311

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 120/306 (39%), Positives = 176/306 (57%), Gaps = 7/306 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  ++  G   T     + +  I I   ++DD   ++LE +++ SD+G    + +++E+
Sbjct: 4   GFFDRIKDGLEKTRKSFVKNVESIVIGYAQIDDDFLDDLEAVMLTSDLGPKTTEYLMKEI 63

Query: 71  LTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                   ++    +    E  I +ML+           H P VILVVGVNGVGKTT I 
Sbjct: 64  RRGVTEGIINHTGDVMPFMEDRITEMLIDQEDEITL---HHPEVILVVGVNGVGKTTTIA 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+   +  G KV++AAGDTFR+AA DQL IWADR     V  + G+D AA+ Y+A + A
Sbjct: 121 KLANYYTKEGKKVIIAAGDTFRAAAADQLSIWADRVGVPIVKHKEGADPAAVVYDAMEAA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D++I+DTAGRLH    LM  + KM RV       APH  L VLD TTGQNA+ Q 
Sbjct: 181 KARNADLVIVDTAGRLHTKVNLMEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNAVSQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F       G+++TK+DGTA+GG +I I     +PV ++GVGEG++DL PF AK+F+  
Sbjct: 241 KLFGQAVPVNGIVVTKLDGTAKGGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKEFANA 300

Query: 310 IT--GC 313
           +   G 
Sbjct: 301 LFNKGM 306


>gi|294791675|ref|ZP_06756823.1| signal recognition particle-docking protein FtsY [Veillonella sp.
           6_1_27]
 gi|294456905|gb|EFG25267.1| signal recognition particle-docking protein FtsY [Veillonella sp.
           6_1_27]
          Length = 311

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 175/306 (57%), Gaps = 7/306 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  ++  G   T     + +  I I   ++DD   ++LE +++ SD+G    + +++E+
Sbjct: 4   GFFDRIKDGLEKTRKSFVKNVESIVIGYAQIDDDFLDDLEAVMLTSDLGPKTTEYLMKEI 63

Query: 71  LTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                   ++    +    E  I +ML+           H P VILVVGVNGVGKTT I 
Sbjct: 64  RRGVTEGIINHTGDVMPFMEDRITEMLIDQEDEITL---HHPEVILVVGVNGVGKTTTIA 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+   +  G KV++ AGDTFR+AA DQL IWADR     V  + G+D AA+ Y+A + A
Sbjct: 121 KLANYYTKEGKKVIIVAGDTFRAAAADQLSIWADRVGVPIVKHKEGADPAAVVYDAMEAA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D++I+DTAGRLH    LM  + KM RV       APH  L VLD TTGQNA+ Q 
Sbjct: 181 KARNADLVIVDTAGRLHTKVNLMEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNAVSQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F       G+++TK+DGTA+GG +I I     +PV ++GVGEG++DL PF AK+F+  
Sbjct: 241 KLFGQAVPVNGIVVTKLDGTAKGGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKEFANA 300

Query: 310 IT--GC 313
           +   G 
Sbjct: 301 LFNKGM 306


>gi|282881453|ref|ZP_06290127.1| signal recognition particle-docking protein FtsY [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304679|gb|EFA96765.1| signal recognition particle-docking protein FtsY [Prevotella
           timonensis CRIS 5C-B1]
          Length = 316

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 124/302 (41%), Positives = 181/302 (59%), Gaps = 6/302 (1%)

Query: 17  LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L +G   T   +   ++  +I   ++DD V + LE++LI SD+GV    KI++ +  +  
Sbjct: 15  LDQGLEKTKQSVISKLSRAVIGKSKVDDEVLDNLEEVLITSDVGVDTTLKIIQRIEERVE 74

Query: 76  A-KDVSVQRVLYDVSELIHKMLMPLSKPFN----WDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   + E I  +L       N        H+P+VILVVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTSELNAILREEIATLLAENHSEDNESWSLPTDHQPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV L A DT+R+AA+DQ+ IW +R     +  ++GSD A++A++  + A+
Sbjct: 135 LAYQFKQAGKKVYLGAADTYRAAAVDQIVIWGERVGVPVIKQQMGSDPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  VL VLD +TGQNA  Q +
Sbjct: 195 ANHADVVLIDTAGRLHNKVGLMNELKKIKEVMKKVLPQAPDEVLLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GE + DL+ F  K+F   +
Sbjct: 255 QFSAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEQMEDLQLFQRKEFVDSL 314

Query: 311 TG 312
            G
Sbjct: 315 FG 316


>gi|253573492|ref|ZP_04850835.1| signal recognition particle protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847020|gb|EES75025.1| signal recognition particle protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 458

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 150/306 (49%), Gaps = 16/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+   + +    ++ +D V E + +    L+ +D+   V ++ + ++  K  
Sbjct: 2   AFEGLTSRLQSVFSKLRGKGKVSEDDVNEAMREVRLALLEADVNFKVVKEFIAKVKEKAV 61

Query: 76  AKDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V         ++  V++ + +++           +  P V+++ G+ G GKTT   K
Sbjct: 62  GKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLARS-NRPPTVVMMAGLQGAGKTTTSAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +     + +L AGD +R AAI QL++  ++          G+    +A +A + A+
Sbjct: 121 LAKLLLKENHRPLLVAGDIYRPAAIKQLQVLGEQIKVPVFTLPEGNSPVEIARQALQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D ++IDTAGRLH +  LM  + ++  V        P  VL V+DA TGQ+A+   E
Sbjct: 181 DNGNDYVLIDTAGRLHVDEELMEELRQIHEVTN------PDEVLLVVDAMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG  RGG  + +      P+ F  +GE I+ LEPF  +  ++ I
Sbjct: 235 SFNQQLTLTGVVLTKLDGDTRGGAALSVKAVTGCPIKFAALGEKIDALEPFHPERMASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|332535262|ref|ZP_08411064.1| signal recognition particle, subunit Ffh SRP54 [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035293|gb|EGI71797.1| signal recognition particle, subunit Ffh SRP54 [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 459

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L + + +I    RL +        E+    + +D+ + V ++ V+++  +   
Sbjct: 2   FENLQERLGKTLKNISGRGRLTEDNIKDTLREVRMAFLEADVALPVVREFVKQVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V E + K +   ++  + + +  P V++V G+ G GKTT + KL
Sbjct: 62  VEVTKSLSPGQVFIKIVREELEKAMGEANEELSLN-AQPPAVVMVAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K + + + D +R AAI QL+  A     DF  S+I      +A  A   A+
Sbjct: 121 AKFLKERKKKSVLVVSADVYRPAAIKQLETLATEVDVDFFPSDISQKPVDIANAAISHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+++DTAGRLH +S +M  I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFIDVVLVDTAGRLHVDSNMMDEIKDLHKAIN------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG ARGG  + I      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|169350198|ref|ZP_02867136.1| hypothetical protein CLOSPI_00942 [Clostridium spiroforme DSM 1552]
 gi|169292981|gb|EDS75114.1| hypothetical protein CLOSPI_00942 [Clostridium spiroforme DSM 1552]
          Length = 465

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 151/306 (49%), Gaps = 18/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L+  +  +    RL +     +  E+   L+ +D+   V ++ +     K  
Sbjct: 2   AFDSLSERLQGTLKKVSGQGRLTEKNMEEMLSEIRLALLEADVNFQVVKEFIAATKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V + + ++L   +     D++ +P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVLGSLKPGQVVVKIVHDELVELLG--TTVATIDYNKKPTVIMMVGLQGSGKTTTAGK 119

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++  +    G K +L A D +R AA+DQLK   ++ +           A ++  EA + A
Sbjct: 120 IANLISKKNGKKPLLVAADIYRPAAVDQLKTLGEQLNIPVYEKGTSQSAESIVEEAMRFA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DV+IIDTAGRLH +  LM  +  +  +        PH +L V+DA TGQ+ +   
Sbjct: 180 RENNNDVIIIDTAGRLHIDEPLMQELSNIKEI------AHPHEILLVVDALTGQDIVNVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG ++TK+DG +RGGG + I     +P+ F+G GE ++ ++ F     +  
Sbjct: 234 SSFNEQLSITGAVLTKLDGDSRGGGALSIRHITHVPIKFIGTGEKLDAIDLFYPDRMADR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|167630250|ref|YP_001680749.1| signal recognition particle protein [Heliobacterium modesticaldum
           Ice1]
 gi|167592990|gb|ABZ84738.1| signal recognition particle protein [Heliobacterium modesticaldum
           Ice1]
          Length = 454

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + KL+  +  +    ++ +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FEGLAEKLQNTLKKLRGKGKVSEADVAEAMREVRMALLAADVSLKVVKDFVARVKERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V E +  ++   S          P V+++VG+ G GKTT + KL
Sbjct: 62  QEVLESLTPGQQVVKVVYEELVALMGGTSSKLTLS-PKPPTVVMLVGLQGAGKTTTVSKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              +   G + +L A D +R AA+ QL++  ++          G     +A  A + A A
Sbjct: 121 GLFLRKQGRRPLLVACDVYRPAAVKQLQVLGNQLDLPVFSMGTGVSPVDIAKGAVEHAVA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++++DTAGRLH N  LM  +  +   +       PH +L V+DA TGQ+A+   E 
Sbjct: 181 HGRDMVLLDTAGRLHINEELMEELKSIKSAV------RPHEILLVVDAMTGQDAVNVAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G  G+I+TK+DG ARGG  + +      P+ F G+GE  + LE F     ++ I 
Sbjct: 235 FHGQLGLDGVILTKLDGDARGGAALSVKAVTGCPIKFAGMGEKPDALEQFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|109897991|ref|YP_661246.1| signal recognition particle protein [Pseudoalteromonas atlantica
           T6c]
 gi|109700272|gb|ABG40192.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Pseudoalteromonas atlantica T6c]
          Length = 458

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + DI    RL D        E+   L+ +D+ + V +  +E++  +   
Sbjct: 2   FENLTERLGKTLKDISGRGRLTDDNIKDTLREVRMALLEADVALPVVKSFIEQVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  TEVSKSLNPGQVFIKIVQAELESVMGQANEGLDL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ ++     KV++ + D +R AAI QL+  A     +   S I      +   A   A+
Sbjct: 121 ARYLTDREKKKVLVVSADVYRPAAIKQLETLAIEVGVECFPSTIEQKPIDIVNAAVDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH ++ +M  I  + + +K      P   L V+DA TGQ+A    +
Sbjct: 181 KKFFDVLLVDTAGRLHIDAEMMGEIKDLHQAIK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE I+ LEPF  +  ++ I
Sbjct: 235 AFNEALPLTGVILTKTDGDARGGAALSVRHITGKPIKFLGMGEKIDALEPFHPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|86607761|ref|YP_476523.1| signal recognition particle protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556303|gb|ABD01260.1| signal recognition particle protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 487

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 143/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+     +    ++ +        E+   L+ +D+ + V ++ +E++      
Sbjct: 2   FDALSEKLELAWRKLRGQDKITETNIQEALREVRRALLDADVNLQVVKQFIEDVREAALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + K++   + P        P ++L+ G+ G GKTT   KL
Sbjct: 62  SEVILGVTPDQQFIKIVHDELVKVMGEANVPI-AQAEQPPTIVLMAGLQGSGKTTTCAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G K ++ AGD +R AAIDQLK    +                +A +  + A+ 
Sbjct: 121 ALYLRKQGKKSLMVAGDIYRPAAIDQLKTLGQQIQIPVFDLGKAD-PVEIARQGVETARQ 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D +I+DTAGRL  +  +MA + ++   ++      PH +L V+DA  GQ A      
Sbjct: 180 QGYDYVILDTAGRLQIDLEMMAELERIKAAVQ------PHEILLVVDAMIGQEAASLTRA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TK+DG  RGG  + I      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 234 FHERLGITGAILTKLDGDTRGGAALSIRQVSGQPIKFIGVGEKVEALDPFYPDRMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|332366910|gb|EGJ44651.1| signal recognition particle protein [Streptococcus sanguinis
           SK1059]
          Length = 534

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 82/312 (26%), Positives = 145/312 (46%), Gaps = 17/312 (5%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEEL 70
           R++   F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++
Sbjct: 7   RRIKMAFESLTERLQNVFKNLRRKGKISENDVQEATKEIRLALLEADVALPVVKDFIKKV 66

Query: 71  LTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
             +    +V       Q+++  V E +  +L   +          P +I++VG+ G GKT
Sbjct: 67  RERAVGHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKT 125

Query: 126 TVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T  GKL+ K+      + ++ A D +R AAIDQLK    +             A  +  +
Sbjct: 126 TFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQ 185

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             +QA+A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ 
Sbjct: 186 GLEQAKANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQE 239

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A      F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F   
Sbjct: 240 AANVAREFNSQLEVTGIILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPD 299

Query: 305 DFSAVITGCLDY 316
             S+ I G  D 
Sbjct: 300 RMSSRILGMGDM 311


>gi|313114996|ref|ZP_07800489.1| signal recognition particle-docking protein FtsY [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310622687|gb|EFQ06149.1| signal recognition particle-docking protein FtsY [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 316

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 123/293 (41%), Positives = 181/293 (61%), Gaps = 4/293 (1%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           G   T       I + ++   +DD + ++LE+ LI +D+G  VA ++V++L  + + K +
Sbjct: 21  GLEKTRTGFWGNILNTLTGSVIDDDMYDDLEEQLILADVGGEVAVRLVDKLRDRVHEKGL 80

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
                  D + ++I + + P ++    D S +P VILV+GVNGVGKTT I KL+   +  
Sbjct: 81  KTGEEAADALRDIIAEEMTPDAE---MDLSGKPAVILVIGVNGVGKTTSIAKLADHYTRE 137

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G KVMLAAGDTFR+AA +QL+IWADR     V +  G+D AA+ ++  K A A+  D++I
Sbjct: 138 GKKVMLAAGDTFRAAASEQLEIWADRAGVPIVSAGEGADPAAVIFDTVKSATARGYDMVI 197

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
            DTAGRLHN + LMA + K+ R +K+  P A    L VLDA TGQNA+ Q + F   A  
Sbjct: 198 ADTAGRLHNKANLMAELSKISRSVKKASPEASLETLLVLDAITGQNAISQAKEFCKAADA 257

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           TG+I+TK+DGTA+GG ++ +     +PV F+GVGEGI+DL PF  + F   + 
Sbjct: 258 TGIILTKLDGTAKGGCVVAVKQRLGLPVRFIGVGEGIDDLLPFTPEGFVEELL 310


>gi|306820822|ref|ZP_07454446.1| cell division protein FtsY [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551140|gb|EFM39107.1| cell division protein FtsY [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 395

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 127/311 (40%), Positives = 195/311 (62%), Gaps = 5/311 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +    E      +L +G   TS    E   ++     ++DD + EELE++LI SDI    
Sbjct: 87  ETAVIEKKGLFARLKEGLKKTSDSFTEKFDNLFKGYLKIDDDLYEELEEILITSDISFDT 146

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             KIVE L      K+++   ++  ++ E+++++L   +     D  ++ ++I++VGVNG
Sbjct: 147 TLKIVENLKKNIKKKNINDVNLVKPELKEVLYELLENNNS--KLDVENQKNIIVIVGVNG 204

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAA 180
           VGKTT IGKL+ K  + G  V+LAAGDTFR+AA +QL+IW+ R   D V   E G+D +A
Sbjct: 205 VGKTTTIGKLASKFKNEGKSVLLAAGDTFRAAAEEQLEIWSTRAGVDIVRHNESGADPSA 264

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A ++A++K  D+LI DTAGRLHN   LM  + K++R++ +  P A   VL V+DAT
Sbjct: 265 VIYDAIQRAKSKNTDILICDTAGRLHNKVNLMNELSKIMRIIGKQYPDAKKEVLLVIDAT 324

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV+ F+     TG+I+TK+DGTA+GG ++ IV  +K+PV F+GVGE ++DL+ 
Sbjct: 325 TGQNALNQVKTFNEAVELTGVILTKLDGTAKGGVVLSIVDEYKLPVKFIGVGEKVDDLQE 384

Query: 301 FVAKDFSAVIT 311
           F  K+F   + 
Sbjct: 385 FDYKNFVDALF 395


>gi|160882777|ref|ZP_02063780.1| hypothetical protein BACOVA_00738 [Bacteroides ovatus ATCC 8483]
 gi|237720683|ref|ZP_04551164.1| recognition particle-docking protein FtsY [Bacteroides sp. 2_2_4]
 gi|260170246|ref|ZP_05756658.1| recognition particle-docking protein FtsY [Bacteroides sp. D2]
 gi|299145601|ref|ZP_07038669.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           3_1_23]
 gi|315918609|ref|ZP_07914849.1| recognition particle-docking protein FtsY [Bacteroides sp. D2]
 gi|156111801|gb|EDO13546.1| hypothetical protein BACOVA_00738 [Bacteroides ovatus ATCC 8483]
 gi|229449518|gb|EEO55309.1| recognition particle-docking protein FtsY [Bacteroides sp. 2_2_4]
 gi|298516092|gb|EFI39973.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           3_1_23]
 gi|313692484|gb|EFS29319.1| recognition particle-docking protein FtsY [Bacteroides sp. D2]
          Length = 319

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 183/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I++ +  +  A K V+ Q +   + + I  +L   +      F+   + +P+VI+VVGVN
Sbjct: 65  IIKRIEKRAAADKYVNTQELNLILRDEIAALLTENNSGDVADFDVPIARKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY+    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP  VL VLD +
Sbjct: 185 VAYDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPDEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F   +F   + G
Sbjct: 305 FRKNEFVDSLFG 316


>gi|330717910|ref|ZP_08312510.1| signal recognition particle protein [Leuconostoc fallax KCTC 3537]
          Length = 492

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L + + ++    R+ +        E+   L+ +D+     ++ V  +  K  
Sbjct: 2   AFENLTERLSKAMKNLTGRGRVSEEDLHATMREIRLALLEADVNYGTVKRFVANVRGKAS 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             D+     + Q+V+  V+E + KM+   + P N      P +I++ G+ G GKTT + K
Sbjct: 62  GADILEGLDAPQQVVKIVNEELTKMMGDEAVPLNKS-PQIPTIIMMAGLQGAGKTTTVAK 120

Query: 131 LSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + +L A D +R AAIDQL+I               +D   +     ++A
Sbjct: 121 LAYKLKQENKARPLLIAADIYRPAAIDQLEILGKDLDIPVFSLGTDTDPRDIVRAGLEEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D + IDTAGRL  + +LM  +  +  +        P  +L  +DA TGQNA    
Sbjct: 181 KQHRNDYVFIDTAGRLQIDEVLMQELKDIAEI------AHPDEILLTVDAMTGQNATETA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG  RGG  + I      P+ F+G GE   DL+ F     ++ 
Sbjct: 235 KGFSESLDLTGVVLTKLDGDTRGGAALSIRDVTGKPIKFVGQGEKPTDLDVFYPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|325297731|ref|YP_004257648.1| signal recognition particle-docking protein FtsY [Bacteroides
           salanitronis DSM 18170]
 gi|324317284|gb|ADY35175.1| signal recognition particle-docking protein FtsY [Bacteroides
           salanitronis DSM 18170]
          Length = 320

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 128/316 (40%), Positives = 184/316 (58%), Gaps = 13/316 (4%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   I    ++DD V + LE++LI SD+GV    K
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFGKIARAIAGKSKVDDEVLDNLEEVLITSDVGVETTLK 64

Query: 66  IVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVILVVGV 119
           I++ +  KR A+D  V+   +   + E I  +L   +    + FN      P+VI+VVGV
Sbjct: 65  IIKRI-EKRVAQDKYVNTDELNGILREEIAALLTENNTVDAESFNIPEGKAPYVIMVVGV 123

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++GSD A
Sbjct: 124 NGVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVIKQKMGSDPA 183

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++    A A   DV+IIDTAGRLHN   LM  + K+  V++++ P APH VL VLD 
Sbjct: 184 SVAFDTLSSAVANHADVVIIDTAGRLHNKIGLMNELTKIKNVMQKVVPDAPHEVLLVLDG 243

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA  Q + F        + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+
Sbjct: 244 STGQNAFEQAKQFTLATEVNAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQ 303

Query: 300 PFVAKDFSAVITGCLD 315
            F  ++F   + G  D
Sbjct: 304 IFRRREFVDSLFGTTD 319


>gi|66044529|ref|YP_234370.1| Signal recognition particle protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255236|gb|AAY36332.1| Signal recognition particle protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|330969028|gb|EGH69094.1| signal recognition particle protein [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 458

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVKPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|315224167|ref|ZP_07866007.1| cell division protein FtsY [Capnocytophaga ochracea F0287]
 gi|314945900|gb|EFS97909.1| cell division protein FtsY [Capnocytophaga ochracea F0287]
          Length = 320

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 122/298 (40%), Positives = 182/298 (61%), Gaps = 6/298 (2%)

Query: 17  LTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   +     + +   ++   ++D+ V ++LE++LI SD+GV    KI++ +  +  
Sbjct: 18  LDKGLEKSKNSFFDRLGKALVGKSKVDEEVLDDLEEVLIASDVGVNTTLKIIDRIEARVA 77

Query: 75  YAKDVSVQRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K ++   +   + E I  +L       +  F      +P+V++VVGVNG GKTT IGK
Sbjct: 78  KDKYLNTSELNTILREEIAGLLSETHTGEATDFTLPPDKKPYVMMVVGVNGAGKTTTIGK 137

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ + +  GLKV+L A DTFR+AAIDQL++WADRT    +  ++GSD A++AY+    A 
Sbjct: 138 LASQFTKKGLKVVLGAADTFRAAAIDQLQVWADRTGVPMIKQQLGSDPASVAYDTLSSAV 197

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+IIDTAGRLHN   LM  + K+ RV++++ P APH VL VLD +TGQNA  Q +
Sbjct: 198 KQNADVVIIDTAGRLHNKINLMNELSKIKRVMQKVIPDAPHEVLLVLDGSTGQNAFEQAK 257

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            F      T L +TK+DGTA+GG +I I    +IPV ++GVGEGI+DL+ F   +F  
Sbjct: 258 EFTKATEVTALAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIDDLQIFNKYEFVD 315


>gi|307150109|ref|YP_003885493.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 7822]
 gi|306980337|gb|ADN12218.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 7822]
          Length = 481

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 105/315 (33%), Positives = 180/315 (57%), Gaps = 5/315 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + + V  E ++W+++L +G   T   L   +  I+    L+     E+E LL+++D+G+ 
Sbjct: 165 AAEDVTEEEINWLKRLREGLGKTRRSLVNQLKAIVGQGPLNQDAVTEIEALLLQADVGIE 224

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVV 117
               I+E L  K   + +  ++ +  + E+I ++L    K F            ++ L+ 
Sbjct: 225 ATDYIIEALQEKLREESLPPEQAIEYLKEIIREILDRPFKHFEDTAFEPEKDVLNIWLLT 284

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT IGKL+   + +G   ++ A DTFR+AA++Q+KIW +R+  + + +    +
Sbjct: 285 GVNGAGKTTTIGKLAHMANKSGYSCLIVAADTFRAAAVEQVKIWGERSGTEVIANPGKNT 344

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++    AQ++ V++L++DTAGRL N   LM  + K+ R++ +  P A    L V
Sbjct: 345 DPAAVVFDGINAAQSRNVNLLLVDTAGRLQNKKNLMDELAKIRRIIDKKAPKAKVESLLV 404

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN LRQ ++F   A  +G+++TK+DGTA+GG  + +     +P+ F+G GEGI 
Sbjct: 405 LDATLGQNGLRQAQVFSEAAKLSGVVLTKLDGTAKGGVALAVAQQLDLPIRFIGAGEGIE 464

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF + +F   + 
Sbjct: 465 DLRPFSSYEFVEALL 479


>gi|219669778|ref|YP_002460213.1| signal recognition particle protein [Desulfitobacterium hafniense
           DCB-2]
 gi|219540038|gb|ACL21777.1| signal recognition particle protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 453

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 154/304 (50%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+E    + S  +L +        E+   L+ +D+   V +  V ++  +   
Sbjct: 2   FQGLSEKLQETFKRLKSKGKLTEADVNEAMREVRMALLEADVNFKVVKDFVAKVKERSIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V+E +  ++  +S   N   S  P VI++VG+ G GKTT   KL
Sbjct: 62  QEVLESLSPGQQVIKIVNEEMVALMGGVSSKINIS-SKPPTVIMLVGLQGAGKTTHGAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL++  ++            +   +A  + + A +
Sbjct: 121 ANMLKKQGKHPLLVACDIYRPAAIKQLEVLGEQIKVPVFSLG-QENPVKIAAASLQHANS 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DV+IIDTAGRLH N  LM  + ++   +K      PH +L V+DA TGQ+A+   E 
Sbjct: 180 QGLDVVIIDTAGRLHINEELMGELREIKTAVK------PHEILLVVDAMTGQDAVNVAES 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G  G+I+TK+DG  RGG  + +      P+ F GVGE ++ +EPF  +  ++ I 
Sbjct: 234 FHNELGVDGIILTKLDGDTRGGAALSVKAVTGCPIKFAGVGEKMDAIEPFFPERMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|320155362|ref|YP_004187741.1| signal recognition particle, subunit Ffh SRP54 [Vibrio vulnificus
           MO6-24/O]
 gi|326423856|ref|NP_760505.2| signal recognition particle protein [Vibrio vulnificus CMCP6]
 gi|319930674|gb|ADV85538.1| signal recognition particle, subunit Ffh SRP54 [Vibrio vulnificus
           MO6-24/O]
 gi|319999228|gb|AAO10032.2| signal recognition particle protein [Vibrio vulnificus CMCP6]
          Length = 458

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V ++ V  +  K   
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVREFVARVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQGELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSADQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFFDVLIVDTAGRLAIDEAMMGEIQQLHSAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|320323179|gb|EFW79268.1| signal recognition particle protein [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 458

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +I   +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVIGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +    K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDVEMMGEIQALHAATKPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|163803443|ref|ZP_02197316.1| signal recognition particle protein [Vibrio sp. AND4]
 gi|159172744|gb|EDP57592.1| signal recognition particle protein [Vibrio sp. AND4]
          Length = 457

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V ++ V  +  K   
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  +   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQAELEVVMGESNEALDL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSSPDQKPLDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFFDVLIVDTAGRLAIDEEMMGEIKDLHSAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDSLPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|332307017|ref|YP_004434868.1| signal recognition particle protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174346|gb|AEE23600.1| signal recognition particle protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 458

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + DI    RL D        E+   L+ +D+ + V +  +E++  +   
Sbjct: 2   FENLTERLGKTLKDISGRGRLTDDNIKDTLREVRMALLEADVALPVVKSFIEQVKVRAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  TEVSKSLNPGQVFIKIVQAELESVMGQANEGLDL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KV++ + D +R AAI QL+  A     +   S I      +  +A + A+
Sbjct: 121 ARYLTEREKKKVLVVSADIYRPAAIKQLETLATEIGVECFPSTIEQKPIDIVNDAVEHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH ++ +M  I  + + +K      P   L V+DA TGQ+A    +
Sbjct: 181 KKFFDVLLVDTAGRLHIDAEMMGEIKDLHQAIK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF  +  ++ I
Sbjct: 235 AFNEALPLTGVILTKTDGDARGGAALSVRHITGKPIKFLGMGEKVDALEPFHPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|322382560|ref|ZP_08056440.1| signal recognition particle-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153476|gb|EFX45881.1| signal recognition particle-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 455

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + +L+     + S  +L +        E+   L+ +D+   V ++ + ++  +   
Sbjct: 3   FEGLTNRLQNVFGKLRSKGKLSENDVNEALREVRLALLEADVNFKVVKQFISKVKERAVG 62

Query: 77  KDVSVQRV-----LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V          +  V++ + +++           +  P ++++VG+ G GKTT  GKL
Sbjct: 63  QEVMKSFTPGMVVIDIVNKELTELMGGTQSKLAKS-NRPPSIVMMVGLQGAGKTTTTGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K ++    K +L A D +R AAI QL++  ++            +   +A    + A+ 
Sbjct: 122 AKLLTKQNHKPLLVACDIYRPAAIKQLQVLGEQLQVPVFSMGDQVNPVDIAKAGIQHAKD 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +IIDTAGRLH +  LM  + ++   ++      P  +L V+DA TGQ+A+   E 
Sbjct: 182 NHYDYVIIDTAGRLHIDESLMEELKQVREAVE------PDEILLVVDAMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     TG+++TK+DG  RGG  I +      P+ F  +GE ++ LEPF  +  ++ I 
Sbjct: 236 FHKQMELTGVVLTKLDGDTRGGAAISVKAVTGCPIKFAAMGEKMDALEPFHPERMASRIL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDM 300


>gi|170017639|ref|YP_001728558.1| Signal recognition particle protein [Leuconostoc citreum KM20]
 gi|169804496|gb|ACA83114.1| Signal recognition particle protein [Leuconostoc citreum KM20]
          Length = 491

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L + + ++    R+ +        E+   L+ +D+     +K V  +  K  
Sbjct: 2   AFENLTERLSKAMKNLTGRGRVSEEDLRATMREIRLALLEADVNYETVKKFVANVREKAS 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             D+       Q+V+  V++ +   +   + P N      P VI++ G+ G GKTT + K
Sbjct: 62  GADILEGLNPAQQVVKIVNDELTATMGEEAVPLNKS-PKIPTVIMMAGLQGAGKTTTVAK 120

Query: 131 LSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + +L A D +R AAIDQL+I                +   +  +   +A
Sbjct: 121 LAYKLKSEQHARPLLIAADVYRPAAIDQLEILGRDLGIPVFQLGTDINPRDIVRQGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D + IDTAGRL  +  LM  +  +       D  +P  +L  +DA TGQNA    
Sbjct: 181 HKNKNDYVFIDTAGRLQIDETLMQELKDI------ADIASPDEILLTVDAMTGQNAAETA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F A    TG+++TK+D   RGG  + I      P+ F+G GE   DL+ F     ++ 
Sbjct: 235 KGFSAALDLTGVVLTKLDADTRGGAALSIRDVTGKPIKFIGQGEKPTDLDVFYPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|291566674|dbj|BAI88946.1| signal recognition particle docking protein FtsY [Arthrospira
           platensis NIES-39]
          Length = 572

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 110/314 (35%), Positives = 183/314 (58%), Gaps = 5/314 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            ++VA E ++W++KL KG   T   L   +  I+    L+    EE+E LL+++D+GV  
Sbjct: 257 PEEVAVEEITWLQKLWKGLGRTRRNLLNQLKAIVGQGPLNQAAVEEIEALLLQADVGVEA 316

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVG 118
              I+E L  +     +  +  +  + +L+  +L         P       + ++ L+ G
Sbjct: 317 TDVIIEALQNRLREDALPPEDAIAYLKQLLRDLLEKPYQNGYSPTFAPEKEQLNIWLITG 376

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNG GKTT IGK++     +  + ++AAGDTFR+AA++Q+K+W +R+  + + +    +D
Sbjct: 377 VNGAGKTTTIGKIAHIAQKSDYRSLIAAGDTFRAAAVEQVKVWGERSGVEVIANPGKNTD 436

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A   A++++ ++LIIDTAGRL N   LM  + K+ RV+ +  P A    L VL
Sbjct: 437 PAAVVYDAIAAAKSRQTELLIIDTAGRLQNKKNLMEELNKIRRVIDKQAPDAKVESLLVL 496

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+T GQN LRQ ++F  VA  +G+++TK+DGTA+GG  + +V    +P+ F+GVGE I D
Sbjct: 497 DSTLGQNGLRQAQVFAEVAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGVGESIED 556

Query: 298 LEPFVAKDFSAVIT 311
           L PF + +F   + 
Sbjct: 557 LRPFSSYEFIEALL 570


>gi|152971460|ref|YP_001336569.1| signal recognition particle protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206578967|ref|YP_002237051.1| signal recognition particle protein [Klebsiella pneumoniae 342]
 gi|238896056|ref|YP_002920792.1| signal recognition particle protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|288934014|ref|YP_003438073.1| signal recognition particle protein [Klebsiella variicola At-22]
 gi|290510926|ref|ZP_06550295.1| signal recognition particle protein [Klebsiella sp. 1_1_55]
 gi|150956309|gb|ABR78339.1| 4.5S-RNP protein, GTP-binding export factor [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206568025|gb|ACI09801.1| signal recognition particle protein [Klebsiella pneumoniae 342]
 gi|238548374|dbj|BAH64725.1| SRP component with 4.5S RNA [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|288888743|gb|ADC57061.1| signal recognition particle protein [Klebsiella variicola At-22]
 gi|289775919|gb|EFD83918.1| signal recognition particle protein [Klebsiella sp. 1_1_55]
          Length = 454

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRNELVAAMGEENQTLDL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|109649512|gb|ABG36707.1| FtsY [Bartonella australis]
          Length = 366

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 145/299 (48%), Positives = 208/299 (69%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S   V  +  +W  +L KG + +S +L   I D+    +L     +EL D+  ++D+GV
Sbjct: 68  LSEPSVEQKKTAWFGRLKKGLSLSSQRLSGSICDLFVKEKLVKDTLQELGDIPFQADLGV 127

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A  I + + + RY K +S   +   ++  I K+L P++ P   D +H+PHVIL+VGVN
Sbjct: 128 ETAAHITDTIASSRYEKSLSPDNIHTIMANEIEKILEPVAIPLELDLNHKPHVILLVGVN 187

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ K++ +GLKV LAAGDTFR+AAI+QL +W +RT +  V +++G+DAA+
Sbjct: 188 GTGKTTTIGKLAAKLTASGLKVTLAAGDTFRAAAIEQLHVWGERTRSPVVSTKLGADAAS 247

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA++A+++A+ +  DVLIIDTAGRL N + LM  + K+IRVL +  P APH+VLQ LDAT
Sbjct: 248 LAFDAYEKAKKENSDVLIIDTAGRLQNKTELMDELAKIIRVLGKHTPKAPHTVLQTLDAT 307

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TGQNAL QV++F  VAG  GL+MTK+DG+ARGG L+ I   +K+PVYF+GVGE I DL+
Sbjct: 308 TGQNALNQVDIFRDVAGVNGLVMTKLDGSARGGILVAIASKYKLPVYFIGVGENIEDLQ 366


>gi|311030155|ref|ZP_07708245.1| signal recognition particle protein [Bacillus sp. m3-13]
          Length = 448

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  I  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQNTIQKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKRVNERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V E +  ++           S  P VI++VG+ G GKTT  GK
Sbjct: 62  GQEVMKSLTPGQQVIKVVKEELTALMGGEQSKIAVS-SRPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    + S              +A +A ++A
Sbjct: 121 LANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQLSMPVFSLGDQVSPVEIAKQAIQKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D ++IDTAGRLH +  LM  + ++  +        P  +  V+DA TGQ+A+   
Sbjct: 181 KDEHHDYVLIDTAGRLHVDENLMDELKQVKEISN------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + +      P+ ++G+GE ++ +EPF  +  ++ 
Sbjct: 235 QSFNEQLGLTGVVLTKLDGDTRGGAALSVKAVTNTPIKYIGMGEKLDAIEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|158337260|ref|YP_001518435.1| signal recognition particle protein [Acaryochloris marina
           MBIC11017]
 gi|158307501|gb|ABW29118.1| signal recognition particle protein [Acaryochloris marina
           MBIC11017]
          Length = 476

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +        E+   L+ +D+ + V +  +EE+      
Sbjct: 2   FEALSDRLESAWKTLRGQDKISESNIQDALREVRRALLEADVNLQVVKDFIEEVRESALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + +++   ++P   + +  P VIL+ G+ G GKTT   KL
Sbjct: 62  AEVITGVQPDQQFIKIVHDQLVEIMGATNEPL-AESNKPPTVILMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       +L A D +R AAIDQL    ++           ++   +A +    A+ 
Sbjct: 121 ALHLRKQEQTSLLVATDIYRPAAIDQLVTLGEQIDVPVFQLGTDANPVEIARQGLAAARE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VD +I+DTAGRL  +  +M+ +  + + +K      P   L V+DA TGQ A    + 
Sbjct: 181 QNVDTVIVDTAGRLQIDPEMMSELADIKKAIK------PDETLLVVDAMTGQEAANLTQT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TKMDG  RGG  + I      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FHDQIGITGAILTKMDGDTRGGAALSIRQISGKPIKFVGVGEKVEALQPFYPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|90415299|ref|ZP_01223233.1| signal recognition particle receptor FtsY [marine gamma
           proteobacterium HTCC2207]
 gi|90332622|gb|EAS47792.1| signal recognition particle receptor FtsY [marine gamma
           proteobacterium HTCC2207]
          Length = 354

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 125/305 (40%), Positives = 195/305 (63%), Gaps = 4/305 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
               K+ +  + TS  L +     + ++ +DD + EELE LL+ +D+G+    +I+ +L 
Sbjct: 53  GLFSKMQRALSRTSRGLGDLF---LGAKVIDDDLFEELETLLLMADVGIDATSQIIAQLT 109

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +     +     L   + +++   L P  +  + + +  P V+LVVGVNGVGKTT IGK
Sbjct: 110 ERSNRAMLKDGAALQAALRDILIARLTPCEQTLHTENAEGPFVMLVVGVNGVGKTTTIGK 169

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++++   G  VMLAAGDTFR+AA++QL++W +R     V    G+D+A++ ++A + A+
Sbjct: 170 MARQLQQQGQSVMLAAGDTFRAAAVEQLQVWGERNQIPVVAQHTGADSASVVFDAVESAR 229

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK +DV+I DTAGRLHN S LM  + K+ RV  +LD  APH VL VLDA TGQNA+ Q+ 
Sbjct: 230 AKNIDVIIADTAGRLHNKSNLMEELKKVRRVAAKLDATAPHEVLLVLDAGTGQNAVAQMT 289

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FHA AG TG+++TK+DGTA+GG +  +     +P+ ++GVGEG++DL+PFVA+ F + +
Sbjct: 290 EFHATAGVTGIVLTKLDGTAKGGVIFALAEKFSVPIRYIGVGEGVDDLQPFVAEQFVSAL 349

Query: 311 TGCLD 315
            G  D
Sbjct: 350 LGQGD 354


>gi|54310152|ref|YP_131172.1| putative signal recognition particle protein [Photobacterium
           profundum SS9]
 gi|46914593|emb|CAG21370.1| putative signal recognition particle protein [Photobacterium
           profundum SS9]
          Length = 455

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL D        E+   L+ +D+ + V ++ V+ +  +   
Sbjct: 2   FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  +      P VIL+ G+ G GKTT + KL
Sbjct: 62  SEVSKSLTPGQEFIKIVQAELESVMGESNEALDLAC-QPPAVILMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +       V++ + D +R AAI QL+  A     DF  S +      +   A    +
Sbjct: 121 GKVLKEREKKNVLVVSADVYRPAAIKQLETLASDVGIDFFPSSVEQKPVDIVSAAVAHGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRLH + ++M  I  + +         P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVVIVDTAGRLHVDDVMMDEIKDIHKAAN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKVDGDARGGAALSVRYITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|302185524|ref|ZP_07262197.1| Signal recognition particle protein [Pseudomonas syringae pv.
           syringae 642]
          Length = 458

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVKPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|262202018|ref|YP_003273226.1| signal recognition particle protein [Gordonia bronchialis DSM
           43247]
 gi|262085365|gb|ACY21333.1| signal recognition particle protein [Gordonia bronchialis DSM
           43247]
          Length = 517

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 88/317 (27%), Positives = 140/317 (44%), Gaps = 29/317 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDSLSDRLTGALKDLRGKGRLSDADIDRTCREIRLALLEADVSLPVVRAFIARIKDRAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKIVNEELVGILGGETRRVTY-AKTPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-------------GSDA 178
              +   G   ML A D  R  A+ QL+I  +R                         D 
Sbjct: 121 GHWLQQQGHTPMLVACDLQRPGAVSQLQIVGERAGVPVFAPHPGTSVGGEGVLGVSSGDP 180

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            A+A     +A+ +  DV+IIDTAGRL  +  LM     +           P  VL V+D
Sbjct: 181 VAVAQGGVDEARRQHYDVVIIDTAGRLGIDEELMRQAADIREA------TRPDEVLFVVD 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+   + F    G TG+++TK+DG ARGG  + +      P+ F   GE + D 
Sbjct: 235 AMIGQDAVTTAQAFQDGVGFTGVVLTKLDGDARGGAALSVREVTGRPIMFASSGEKLEDF 294

Query: 299 EPFVAKDFSAVITGCLD 315
           + F     ++ I G  D
Sbjct: 295 DVFHPDRMASRILGMGD 311


>gi|218887338|ref|YP_002436659.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758292|gb|ACL09191.1| signal recognition particle-docking protein FtsY [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 464

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 122/316 (38%), Positives = 182/316 (57%), Gaps = 5/316 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           +  +    E      KLT+G A T  ++   I  +++S  R+D    EELE++LI +D+G
Sbjct: 143 LDLEDEEDERNRLFLKLTEGLARTREQITGRIDALLASHGRIDAKFWEELEEILIMADVG 202

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVG 118
              A ++   L  +             D   L+ + L  + + P        P V+L++G
Sbjct: 203 FEPAMQLTGRLKERARKAGTDDPAAFRD---LLREELQDIFRAPRRIAAVTPPEVVLMIG 259

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT I KL+ +    G KV++AA DTFR+AAI+QL++WA R  ADF     GSD 
Sbjct: 260 VNGVGKTTTIAKLAHRARMQGKKVLIAAADTFRAAAIEQLEVWAKRVGADFHAKSAGSDP 319

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+A+EA   A A   D++ +DTAGRLH    LM  + K+ R+L+R  P APH  + V+D
Sbjct: 320 AAVAFEAMDVALAGGYDIVFVDTAGRLHTKVNLMEELHKIRRILERKHPGAPHRSILVID 379

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q ++F+   G   +++TK+DGTA+GG ++ + +   IP+ F+G+GE + DL
Sbjct: 380 ATTGQNALSQTKLFNEACGVDEIVLTKLDGTAKGGIVVAVAMQFGIPITFVGLGEKMEDL 439

Query: 299 EPFVAKDFSAVITGCL 314
            PF   DF+  + G  
Sbjct: 440 RPFDGGDFALALLGVG 455


>gi|297584012|ref|YP_003699792.1| signal recognition particle protein [Bacillus selenitireducens
           MLS10]
 gi|297142469|gb|ADH99226.1| signal recognition particle protein [Bacillus selenitireducens
           MLS10]
          Length = 449

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 155/306 (50%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  I  +    ++ ++ V+E   E+   L+ +D+   V +K V ++  +  
Sbjct: 2   AFEGLSERLQSSIKKMKGKGKVSEEDVKEMMREVRLALLEADVNFKVVKKFVADVKERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V+E + +++       N   S  P V+++VG+ G GKTT  GK
Sbjct: 62  GQDVMESLTPGQQVIKVVNEELTRLMGGEQSKINT-ASKPPTVVMMVGLQGAGKTTTTGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   K +L A D +R AAI QL+    +                +A +A + A
Sbjct: 121 LANYLRKNHNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIARKAVEHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D ++IDTAGRLH ++ LM  + ++   +K      P  VL V+DA TGQ+A+   
Sbjct: 181 KEEHHDYVLIDTAGRLHIDNELMDELQQVKAEVK------PDEVLLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     +G+++TK+DG  RGG  I +      P+ F G+GE I+ LEPF  +  ++ 
Sbjct: 235 ESFNEQLELSGVVLTKLDGDTRGGAAISVKAVTDTPIKFAGMGEKIDQLEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|294673494|ref|YP_003574110.1| recognition particle-docking protein FtsY [Prevotella ruminicola
           23]
 gi|294472858|gb|ADE82247.1| recognition particle-docking protein FtsY [Prevotella ruminicola
           23]
          Length = 317

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 125/311 (40%), Positives = 186/311 (59%), Gaps = 11/311 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
            +  K     L KG   T   + + +T  ++ + ++DD V + LE++LI SD+GV    K
Sbjct: 5   GFFSKDKKETLDKGLEKTKTSVFDKLTRAVAGKSKVDDDVLDNLEEVLITSDVGVDTTLK 64

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFN----WDFSHRPHVILVVGVN 120
           I++ +  +    K VS   +   + E I ++L   +   N        H+P+VILVVGVN
Sbjct: 65  IIQRIEERVARDKYVSTSELNRILREEIAELLAENNSDDNDNWDLPADHKPYVILVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG KV L A DTFR+AA++QL IW +R     +  ++GSD A+
Sbjct: 125 GVGKTTTIGKLAWQFKQAGKKVYLGAADTFRAAAVEQLCIWGERVGVPVIKQQMGSDPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++  + A+A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  V+ VLD +
Sbjct: 185 VAFDTLQSAKANGADVVLIDTAGRLHNKVGLMNELKKIKDVMKKVLPEAPDEVMLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMTDLQL 304

Query: 301 FVAKDFSAVIT 311
           F  + F   + 
Sbjct: 305 FNKRQFVDSLF 315


>gi|296451248|ref|ZP_06892988.1| signal recognition particle protein [Clostridium difficile NAP08]
 gi|296880400|ref|ZP_06904363.1| signal recognition particle protein [Clostridium difficile NAP07]
 gi|296259854|gb|EFH06709.1| signal recognition particle protein [Clostridium difficile NAP08]
 gi|296428641|gb|EFH14525.1| signal recognition particle protein [Clostridium difficile NAP07]
          Length = 450

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+   + + S  +L +   +    E++  L+ +D+   V +  ++++  +   
Sbjct: 3   FEGLSDKLQGAFSKLKSKGKLTEADVKNAMREVKLALLEADVNFKVVKDFIKKVQERCVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V+E +  ++  +        S  P ++++VG+ G GKTT  GKL
Sbjct: 63  QEVMQSLTPAQHVIKIVNEELTSLMGDVQSKVMIS-SKPPTILMMVGLQGAGKTTTAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
                  G K +L A D +R AAI QL++  ++            +   +A      A  
Sbjct: 122 GGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDIPVFNMGDKENPVNIAKAGLSHAIK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++IIDTAGRLH + +LM  +  +   +K      PH +L V+D+ TGQ+A+   E 
Sbjct: 182 NANDLVIIDTAGRLHIDEVLMDELKSIKSEVK------PHEILLVVDSMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DG  RGG  + I    + P+ F+G+GE ++D+EPF     ++ I 
Sbjct: 236 FNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIKFMGMGEKLDDIEPFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|325955098|ref|YP_004238758.1| signal recognition particle-docking protein FtsY [Weeksella virosa
           DSM 16922]
 gi|323437716|gb|ADX68180.1| signal recognition particle-docking protein FtsY [Weeksella virosa
           DSM 16922]
          Length = 320

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 130/313 (41%), Positives = 185/313 (59%), Gaps = 15/313 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGV 60
           +SW +K         L +G   +   L + I+  ++   ++DD V ++LE++LI SD+GV
Sbjct: 1   MSWFKKILGKESKEKLDEGLEKSKQSLFDKISRTVVGKSKVDDEVLDDLEEVLISSDVGV 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVIL 115
                I+  +  +    K VS   +   + E I  +L   +      F       P VI+
Sbjct: 61  ETTVNIIRRIEERVARDKYVSTSELNKILREEIAGLLAENNIDDTDGFQIPKKDHPFVIM 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT IGKL+ +    GLKV+L A DTFR+AA+DQL IWA+R     V   +G
Sbjct: 121 VVGVNGVGKTTTIGKLAAQFKAKGLKVVLGAADTFRAAAVDQLVIWAERADVPIVKQAMG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++AY+  + A A+K DV++IDTAGRLHN   LM  + K+ RV++++ P APH VL 
Sbjct: 181 SDPASVAYDTVQSAVAQKADVVLIDTAGRLHNKVNLMNELTKIKRVMQKVIPDAPHEVLL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++GVGEGI
Sbjct: 241 VLDGSTGQNAFEQAKQFTQATEVTSMAVTKLDGTAKGGVVIGISDQFKIPVKYIGVGEGI 300

Query: 296 NDLEPFVAKDFSA 308
           +DL+ F   +F  
Sbjct: 301 HDLQAFNKMEFVD 313


>gi|54026131|ref|YP_120373.1| putative signal recognition particle protein [Nocardia farcinica
           IFM 10152]
 gi|54017639|dbj|BAD59009.1| putative signal recognition particle protein [Nocardia farcinica
           IFM 10152]
          Length = 520

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 144/318 (45%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL     D    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTGALKDLRGKGRLSPADIDATCREIRLALLEADVALPVVRGFIARIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++  N      P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKIVNEELVGILGGETRRLNL-AKTPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177
           +K +   G + +L A D  R  A+ QL++  +R          G+              D
Sbjct: 121 AKYLKGQGHQPLLVACDLQRPGAVTQLQVVGERAGVPVFAPHPGTSVGGGENPLGITAAD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A     +A+ K+ D++I+DTAGRL  +  LM     +       D   P   L VL
Sbjct: 181 PVEVARGGVAEARNKQYDIVIVDTAGRLGIDEELMRQAASI------RDAVQPDETLFVL 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F    G TG+++TK+DG ARGG  + +      P+ F   GE + D
Sbjct: 235 DAMIGQDAVTTAEAFRDGVGFTGVVLTKLDGDARGGAALSVRNVTGAPIMFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     ++ I G  D
Sbjct: 295 FDVFHPDRMASRILGMGD 312


>gi|192361389|ref|YP_001982164.1| signal recognition particle protein [Cellvibrio japonicus Ueda107]
 gi|190687554|gb|ACE85232.1| signal recognition particle protein [Cellvibrio japonicus Ueda107]
          Length = 457

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  +    RL +D +++ L D    L+ +D+ + V +  ++++ ++   
Sbjct: 2   FENLTDRLSHTLRSLTGKARLSEDNIKDALRDVRKALLEADVALPVVKAFIDQVRSRALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + +S      Q+ L  V   +   +   ++  N      P V+L+ G+ G GKTT + KL
Sbjct: 62  QQISKALNPGQQFLKIVEAELVATMGQANESLNL-AQQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 ARFLKEREKKKVLVVSADVYRPAAIRQLETLAADIGVDFFPSSGEQKPLDIARNAHDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH +  LM  I ++   LK      P   L V+DA  GQ+A+   +
Sbjct: 181 KQFFDVLIVDTAGRLHVDEELMVEIKELHASLK------PIETLFVIDAMIGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRHITGKPIKFLGMGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|260775500|ref|ZP_05884397.1| signal recognition particle subunit Ffh SRP54 [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608681|gb|EEX34846.1| signal recognition particle subunit Ffh SRP54 [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 463

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V+ +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVKRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQSELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRL  +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLLVDTAGRLAIDEQMMGEIQELHSAID------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|256820968|ref|YP_003142247.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           ochracea DSM 7271]
 gi|256582551|gb|ACU93686.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           ochracea DSM 7271]
          Length = 320

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 123/298 (41%), Positives = 183/298 (61%), Gaps = 6/298 (2%)

Query: 17  LTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   +     + +   ++   ++D+ V ++LE++LI SD+GV    KI++ + T+  
Sbjct: 18  LDKGLEKSKNSFFDRLGKALVGKSKVDEEVLDDLEEVLIASDVGVNTTLKIIDRIETRVA 77

Query: 75  YAKDVSVQRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K ++   +   + E I  +L       +  F      +P+V++VVGVNG GKTT IGK
Sbjct: 78  KDKYLNTSELNTILREEIAGLLSETHTGEATDFTLPSEKKPYVMMVVGVNGAGKTTTIGK 137

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ + +  GLKV+L A DTFR+AAIDQL++WADRT    +  ++GSD A++AY+    A 
Sbjct: 138 LASQFTKKGLKVVLGAADTFRAAAIDQLQVWADRTGVPMIKQQLGSDPASVAYDTLSSAV 197

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+IIDTAGRLHN   LM  + K+ RV++++ P APH VL VLD +TGQNA  Q +
Sbjct: 198 KQNADVVIIDTAGRLHNKINLMNELSKIKRVMQKVIPDAPHEVLLVLDGSTGQNAFEQAK 257

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            F      T L +TK+DGTA+GG +I I    +IPV ++GVGEGI+DL+ F   +F  
Sbjct: 258 EFTKATEVTALAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIDDLQIFNKYEFVD 315


>gi|255655263|ref|ZP_05400672.1| signal recognition particle protein [Clostridium difficile
           QCD-23m63]
          Length = 452

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+   + + S  +L +   +    E++  L+ +D+   V +  ++++  +   
Sbjct: 3   FEGLSDKLQGAFSKLKSKGKLTEADVKNAMREVKLALLEADVNFKVVKDFIKKVQERCVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V+E +  ++  +        S  P ++++VG+ G GKTT  GKL
Sbjct: 63  QEVMQSLTPAQHVIKIVNEELTSLMGDVQSKVMIS-SKPPTILMMVGLQGAGKTTTAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
                  G K +L A D +R AAI QL++  ++            +   +A      A  
Sbjct: 122 GGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDIPVFNMGDKENPVNIAKAGLSHAIK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++IIDTAGRLH + +LM  +  +   +K      PH +L V+D+ TGQ+A+   E 
Sbjct: 182 NANDLVIIDTAGRLHIDEVLMDELKSIKSEVK------PHEILLVVDSMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DG  RGG  + I    + P+ F+G+GE ++D+EPF     ++ I 
Sbjct: 236 FNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIKFMGMGEKLDDIEPFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|199597130|ref|ZP_03210562.1| Signal recognition particle GTPase [Lactobacillus rhamnosus HN001]
 gi|258508644|ref|YP_003171395.1| cell division protein signal recognition particle FtsY
           [Lactobacillus rhamnosus GG]
 gi|199591934|gb|EDZ00009.1| Signal recognition particle GTPase [Lactobacillus rhamnosus HN001]
 gi|257148571|emb|CAR87544.1| cell division protein, signal recognition particle FtsY
           [Lactobacillus rhamnosus GG]
 gi|259649950|dbj|BAI42112.1| signal recognition particle GTPase [Lactobacillus rhamnosus GG]
          Length = 331

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 108/302 (35%), Positives = 169/302 (55%), Gaps = 5/302 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +G   +     E +  + ++ R +D+   E+LE++LI SD+G   A ++ +EL  +
Sbjct: 22  NKYDEGLEKSRSSFGEKLNALFANFRTVDEDFFEDLEEMLIESDVGFETAVRLSDELREE 81

Query: 74  RYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIG 129
              K+    + +   + E +  M     K  +         P V L VGVNG GKTT +G
Sbjct: 82  VKLKNAKDPKAVSRVIVEKLVDMYGEAGKGEDNQLHFAEEGPTVFLFVGVNGAGKTTTVG 141

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ ++ + G +V+L A DTFR+ AI QL+ W  R     V +  G D AA+ ++  K+A
Sbjct: 142 KLAHQLKEEGKRVLLVAADTFRAGAIQQLQEWGRRVEVPVVATNPGGDPAAVVFDGVKRA 201

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV+++DTAGRL N   LM  + K+ RV+ R  P AP  VL VLDATTGQNAL Q 
Sbjct: 202 KDEGYDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQNALNQA 261

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG+ +GG ++ I     +PV  +G+GE ++DL+ F    F A 
Sbjct: 262 KEFNQTTQITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDPTKFVAG 321

Query: 310 IT 311
           + 
Sbjct: 322 LF 323


>gi|256822050|ref|YP_003146013.1| signal recognition particle protein [Kangiella koreensis DSM 16069]
 gi|256795589|gb|ACV26245.1| signal recognition particle protein [Kangiella koreensis DSM 16069]
          Length = 466

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    ++ +        E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FDSLSDRLSGALKTLKGKGKISEDNIKDTLREVRMALLEADVALPVVKAFIGDVKERAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q  +  V++ + K +   +   N   +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  AEVGKALDPGQAFIKIVNDELVKAMGEANDGLNLS-AKPPVVILMAGLQGAGKTTSAGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +       VM+A+ D +R AAI QL+  A    A F  S        +A  A K+A+
Sbjct: 121 AHLLQTREKKSVMVASADVYRPAAIKQLETVAGEVGATFFPSSTDQKPIDIANNAIKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DV+IIDTAGRL  +  +M  I  +   ++      P   L V+D+ TGQ+A    +
Sbjct: 181 KQFIDVVIIDTAGRLAIDEAMMDEIKALHAAIE------PTETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ F+G+GE I+ LEPF  +  ++ I
Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSIRHITGKPIKFIGMGEKIDQLEPFHPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|261368256|ref|ZP_05981139.1| signal recognition particle-docking protein FtsY [Subdoligranulum
           variabile DSM 15176]
 gi|282569771|gb|EFB75306.1| signal recognition particle-docking protein FtsY [Subdoligranulum
           variabile DSM 15176]
          Length = 321

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 186/312 (59%), Gaps = 4/312 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
              + ++ +     +K+ +G   T     + I + +++ ++DD +  +LE+ LI +D+G 
Sbjct: 4   FKKRNISEKEFEEQQKMQRGLEKTRTGFFQNILNTLTNCQIDDDLYNDLEEQLILADVGP 63

Query: 61  AVAQKIVEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           A A ++V+EL  +     +   +  L  +  +I + L P    +  +    P VILV+GV
Sbjct: 64  ACAVRLVDELRDEVEKNHLKTGEEALDALRGIICQELTP---RYPLELDGHPAVILVIGV 120

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT I KL+    + G +VMLAAGDTFR+AA +QL++WADR     V +  G+D A
Sbjct: 121 NGVGKTTTIAKLAHLYKEEGRRVMLAAGDTFRAAASEQLELWADRAGVPLVQAGQGADPA 180

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A K A AK  D++I DTAGRLHN   LM  +GK+ R +K+  P A   VL VLDA
Sbjct: 181 AVIFDAVKSATAKGYDMVIADTAGRLHNKKGLMDELGKISRSVKKASPEASLEVLLVLDA 240

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
            TGQNA+ Q E F   AG TG+++TK+DGT +GG  + +     +P+ F+GVGE I+DL 
Sbjct: 241 ITGQNAISQAEEFCRAAGATGVVLTKLDGTPKGGCAVSVWENLGLPIRFVGVGEKIDDLM 300

Query: 300 PFVAKDFSAVIT 311
           PF A+ F   + 
Sbjct: 301 PFDAQTFVESLL 312


>gi|331006945|ref|ZP_08330190.1| Signal recognition particle, subunit Ffh SRP54 [gamma
           proteobacterium IMCC1989]
 gi|330419265|gb|EGG93686.1| Signal recognition particle, subunit Ffh SRP54 [gamma
           proteobacterium IMCC1989]
          Length = 469

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  I    RL         +++   L+ +D+ + V +  VE++  +   
Sbjct: 2   FQNLTDRLSKSLKKISGKGRLSHANIQDALKDVRKALLEADVALPVVKGFVEKVRKRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V   + +M+   ++  N   +  P VIL+ G+ G GKTT + KL
Sbjct: 62  QEVARSLNPSQQFIKVVQSELTEMMGEANETLNL-AAQPPAVILMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KVM+ + D +R AAI QL+  A +  A F  S        +A EA   A+
Sbjct: 121 AKYLKEREKKKVMVVSADVYRPAAIQQLETLAGQVEAVFHPSSTDQKPIDIAQEAISAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DV+I+DTAGRL  +  LMA I  + + +       P   L V+DA  GQ+A+   +
Sbjct: 181 KQHLDVVIVDTAGRLAIDDALMAEIQGLQKAIN------PIETLFVIDAMIGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +  T   P+ FLG+GE ++ LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRATTGKPIKFLGMGEKVDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|257867539|ref|ZP_05647192.1| signal recognition particle protein [Enterococcus casseliflavus
           EC30]
 gi|257873868|ref|ZP_05653521.1| signal recognition particle protein [Enterococcus casseliflavus
           EC10]
 gi|257877619|ref|ZP_05657272.1| signal recognition particle protein [Enterococcus casseliflavus
           EC20]
 gi|325571330|ref|ZP_08146830.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Enterococcus casseliflavus
           ATCC 12755]
 gi|257801595|gb|EEV30525.1| signal recognition particle protein [Enterococcus casseliflavus
           EC30]
 gi|257808032|gb|EEV36854.1| signal recognition particle protein [Enterococcus casseliflavus
           EC10]
 gi|257811785|gb|EEV40605.1| signal recognition particle protein [Enterococcus casseliflavus
           EC20]
 gi|325155806|gb|EGC68002.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Enterococcus casseliflavus
           ATCC 12755]
          Length = 472

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 149/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ +    ++ +  V+E   E+   L+ +D+ + V ++  + +  +  
Sbjct: 2   AFESLTERLQQAMSKLRRKGKVSEADVKEMMREIRLALLEADVNLQVVKEFTKNVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E + K L   +          P +I++ G+ G GKTT  GK
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLGSETVGIEKS-PKIPTIIMMAGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      + ++ AGD +R AAIDQLK+   +                +  +    A
Sbjct: 121 LANHLIKTENARPLMIAGDVYRPAAIDQLKVLGQQLDVPVFDMGTDVSPVEIVRQGLALA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D ++IDTAGRLH +  LM  + ++       D   P+ +L V+DA TGQ+A+   
Sbjct: 181 REKKNDYVLIDTAGRLHIDENLMEELKQIK------DLAQPNEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+   G TG+++TK+DG  RGG  + I      P+ F G GE + DLE F     S+ 
Sbjct: 235 ESFNQQLGITGVVITKLDGDTRGGAALSIRQVTGAPIKFTGTGEKLTDLEVFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|254463678|ref|ZP_05077089.1| signal recognition particle-docking protein FtsY [Rhodobacterales
           bacterium Y4I]
 gi|206684586|gb|EDZ45068.1| signal recognition particle-docking protein FtsY [Rhodobacterales
           bacterium Y4I]
          Length = 396

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 128/276 (46%), Positives = 190/276 (68%), Gaps = 1/276 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E+LE+LLI +D+GV  A ++   L   R  K VS + +   +++ + +++ 
Sbjct: 119 RRALDDDMLEQLEELLIAADMGVDTALRVTANLAEGRMGKKVSSREIKELLAQEVARIME 178

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P++KP    ++ RP V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA++Q
Sbjct: 179 PVAKPLPI-YAKRPQVVLVVGVNGSGKTTTIGKLASQFKGAGKKVVIAAGDTFRAAAVEQ 237

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W DR     + +  GSD A+LA++A  +AQ    D+L+IDTAGRL N + LM  + K
Sbjct: 238 LQVWGDRAGVPVLTAPEGSDPASLAFDAMTKAQEDGADLLMIDTAGRLQNRADLMEELAK 297

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV+++ D  APH+ L VLDATTGQNAL QV  F  +A  +GL+MTK+DGTA+GG L+ 
Sbjct: 298 IVRVIRKKDETAPHNTLLVLDATTGQNALSQVGTFQQLADVSGLVMTKLDGTAKGGVLVA 357

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +     +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 358 LADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 393


>gi|153806284|ref|ZP_01958952.1| hypothetical protein BACCAC_00540 [Bacteroides caccae ATCC 43185]
 gi|149130961|gb|EDM22167.1| hypothetical protein BACCAC_00540 [Bacteroides caccae ATCC 43185]
          Length = 319

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 183/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I++ +  +  A K V+ Q + + + + I  +L   +      F+     +P+VI+VVGVN
Sbjct: 65  IIKRIEKRAAADKYVNTQELNHILRDEIAALLTENNSDDVADFDVPIERKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY+    A A   D++IIDTAGRLHN   LM  + K+  V+K++ P AP  VL VLD +
Sbjct: 185 VAYDTLSSAVANNADIVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPDEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F   +F   + G
Sbjct: 305 FRKNEFVDSLFG 316


>gi|281425610|ref|ZP_06256523.1| signal recognition particle-docking protein FtsY [Prevotella oris
           F0302]
 gi|299140826|ref|ZP_07033964.1| signal recognition particle-docking protein FtsY [Prevotella oris
           C735]
 gi|281400197|gb|EFB31028.1| signal recognition particle-docking protein FtsY [Prevotella oris
           F0302]
 gi|298577792|gb|EFI49660.1| signal recognition particle-docking protein FtsY [Prevotella oris
           C735]
          Length = 316

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 123/301 (40%), Positives = 183/301 (60%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T   +   +T  ++ + ++DD V + LE++LI SD+GV    K++E +  +  
Sbjct: 15  LDKGLEKTKESVFSKLTRAVAGKSKVDDEVLDNLEEVLITSDVGVDTTLKVIERIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFN----WDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   + E I  +L   +   N        H+P+VILVVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTSELNGILREEIASLLAENNTDDNDSWELPSDHKPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +  +AG KV L A DTFR+AA++Q+ IW +R     +  ++GSD A++A++  + A+
Sbjct: 135 LAYQFKNAGKKVFLGAADTFRAAAVEQISIWGERVGVPVIKQQMGSDPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  V+ VLD +TGQNA  Q +
Sbjct: 195 ANGADVVLIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPDEVMLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GE + DL+ F  K+F   +
Sbjct: 255 QFSAVTNITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEQMEDLQLFNRKEFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|160947510|ref|ZP_02094677.1| hypothetical protein PEPMIC_01444 [Parvimonas micra ATCC 33270]
 gi|158446644|gb|EDP23639.1| hypothetical protein PEPMIC_01444 [Parvimonas micra ATCC 33270]
          Length = 450

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 153/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+  +  +    +L +   +    E++  L+ SD+   V ++ +  +  +   
Sbjct: 6   FENLSEKLQGALNKLRGKGKLSEKDVDLAMREVKLALLESDVNFKVVKQFISNVKERAIG 65

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K+V       Q+V+  V+E +  ++    +    D S+ P VI++ G+ G GKTT  GKL
Sbjct: 66  KEVMESLTPAQQVIKIVNEELTALMGKKEEKIQID-SNPPTVIMLCGLQGAGKTTHAGKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++       + +L A D +R AAI QL++            +   D   +A E+ K A +
Sbjct: 125 ARYFLKQNKRPLLVACDIYRPAAIKQLQVVGKSVDVPVFTIDDCKDVTKIANESIKFANS 184

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRLH + +LM  +  +   +       P  +L V+D+ TGQ+A+   E 
Sbjct: 185 NSKDIVILDTAGRLHIDDVLMEELKSIKSSVS------PIEILLVVDSMTGQDAVNVAES 238

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+IMTK+DG ARGG  + I      P+ F+GVGE ++DLE F     ++ I 
Sbjct: 239 FNNELDITGVIMTKLDGDARGGAALSIKAITGKPIKFIGVGEKLDDLEQFYPDRMASRIL 298

Query: 312 GCLD 315
           G  D
Sbjct: 299 GMGD 302


>gi|145629006|ref|ZP_01784805.1| signal recognition particle protein [Haemophilus influenzae
           22.1-21]
 gi|144978509|gb|EDJ88232.1| signal recognition particle protein [Haemophilus influenzae
           22.1-21]
          Length = 346

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|293374741|ref|ZP_06621049.1| signal recognition particle protein [Turicibacter sanguinis PC909]
 gi|325837601|ref|ZP_08166448.1| signal recognition particle protein [Turicibacter sp. HGF1]
 gi|292646655|gb|EFF64657.1| signal recognition particle protein [Turicibacter sanguinis PC909]
 gi|325490903|gb|EGC93202.1| signal recognition particle protein [Turicibacter sp. HGF1]
          Length = 475

 Score =  289 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 154/306 (50%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L+  +  +    +L +     +  E+   L+ +D+ + V ++ + E+  K  
Sbjct: 2   AFETLSERLQSALKSVTRKGKLTEKDVDVMMREVRLALLEADVNIKVVREFINEVKEKAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + V       Q+V+  V+E + K++   +   N+  + +P V ++VG+ G GKTT  GK
Sbjct: 62  GEAVLKSLTPGQQVIKIVNEELTKLMGDSAAELNFGHA-KPAVFMMVGLQGAGKTTHTGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +S  +        +L A D +R AA+DQLK    + +          +   +A EA   A
Sbjct: 121 ISSYLRKKEKKNPLLVACDVYRPAAVDQLKTIGKQLNIPVYEKGTSMNPVDIAKEAMTYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D++IIDTAGRLH +  LM  +  +  ++       P  +L V+DA TGQ+A+   
Sbjct: 181 RENGHDLVIIDTAGRLHIDEQLMDELKNIKELVN------PQEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH     TG+++TK+DG  RGG  + I     +P+ F+G+GE ++ LE F  +  ++ 
Sbjct: 235 QSFHDQLDLTGVVLTKLDGDTRGGAALSIRKITNVPIKFIGLGEKLDTLEVFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|323493645|ref|ZP_08098766.1| signal recognition particle protein [Vibrio brasiliensis LMG 20546]
 gi|323312168|gb|EGA65311.1| signal recognition particle protein [Vibrio brasiliensis LMG 20546]
          Length = 462

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  ++ +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFIKRVKEAAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQNELEGVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK +++    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLTERDKKKVLVVSADVYRPAAIKQLETLATDVGVDFFPSSADQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRL  +  +MA I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLVVDTAGRLAVDEQMMAEIQDLHSAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|288942105|ref|YP_003444345.1| signal recognition particle protein [Allochromatium vinosum DSM
           180]
 gi|288897477|gb|ADC63313.1| signal recognition particle protein [Allochromatium vinosum DSM
           180]
          Length = 464

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   + +  +T++    RL +        E+   L+ +D+ + V ++ +E++  +   
Sbjct: 2   FENLQDRFETVLTNLRGQGRLTEDNIKDTLREVRMALLEADVALPVVRQFIEDIREQALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q ++  V++ + K++   ++  +   +  P VIL+ G+ G GKTT + KL
Sbjct: 62  EAVTKSLTPGQVLIKIVNDELVKIMGAANERLDL-AAQPPAVILMAGLQGSGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +       VM+ + D +R AAI+QL+  A    A+F  S+   D   +A  A + A+
Sbjct: 121 ARWLQEKQKKSVMVVSCDVYRPAAIEQLRTVAGEVGAEFCPSQGDEDPVHIAQRALESAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH ++ +M  I  + + +K      P   L V+D+ TGQ+A    +
Sbjct: 181 KRFKDVLIVDTAGRLHVDAEMMDEIKLIHKAIK------PVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG ARGG  + I      P+ FLG GE    LEPF     ++ I
Sbjct: 235 AFDEALPLTGVILTKTDGDARGGAALSIRQITGKPIKFLGTGERTTALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|330959140|gb|EGH59400.1| signal recognition particle protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 458

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVEIAQAAIKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVKSA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|145635508|ref|ZP_01791208.1| Signal recognition particle protein [Haemophilus influenzae PittAA]
 gi|229845502|ref|ZP_04465631.1| Signal recognition particle protein [Haemophilus influenzae 6P18H1]
 gi|145267273|gb|EDK07277.1| Signal recognition particle protein [Haemophilus influenzae PittAA]
 gi|229811605|gb|EEP47305.1| Signal recognition particle protein [Haemophilus influenzae 6P18H1]
          Length = 462

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A EA   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|145633682|ref|ZP_01789408.1| Signal recognition particle protein [Haemophilus influenzae 3655]
 gi|144985442|gb|EDJ92263.1| Signal recognition particle protein [Haemophilus influenzae 3655]
          Length = 459

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A EA   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|120403173|ref|YP_953002.1| signal recognition particle protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955991|gb|ABM12996.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium vanbaalenii PYR-1]
          Length = 522

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 89/317 (28%), Positives = 149/317 (47%), Gaps = 29/317 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ +    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTGALSGLRGKGRLTDADIDATAREIRLALLEADVSLPVVRAFISRIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKIVNEELIGILGGETRQLAF-ARNPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-------------GSDA 178
           +K +   G   +L A D  R  A++QL+I  +R                         D 
Sbjct: 121 AKWLKGQGHTPLLVACDLQRPGAVNQLQIVGERAGVSVFAPHPGVSPDGATIEQMTSGDP 180

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            ++A     +A++K  DV+I+DTAGRL  ++ LMA    +       D   P  VL VLD
Sbjct: 181 VSVAAAGLAEARSKHYDVVIVDTAGRLGIDAELMAQAAAI------RDAVNPDEVLFVLD 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+   + F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D 
Sbjct: 235 AMIGQDAVTTADAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASAGEKLEDF 294

Query: 299 EPFVAKDFSAVITGCLD 315
           + F     ++ I G  D
Sbjct: 295 DVFHPDRMASRILGMGD 311


>gi|327479752|gb|AEA83062.1| signal recognition particle protein Ffh [Pseudomonas stutzeri DSM
           4166]
          Length = 458

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   + +++   ++    + +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  TEVSKSLTPGQAFVKIVRAELEELMGAANEDLALNVT-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K + + + D +R AAI QL+  A      F  S+       +A  A ++A+
Sbjct: 121 ARFLKERKKKTVLVVSADVYRPAAIKQLETLAGEVGVTFFPSDTSQKPVDIAQAAIREAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+++DTAGRL  ++ +MA I  +   +K          L V+DA TGQ+A     
Sbjct: 181 LKFIDVVLVDTAGRLAIDAEMMAEIQAVHAAIKPA------ETLFVVDAMTGQDAANTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + +      P+ FLG+GE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVVLTKVDGDARGGAALSVRHVTGKPIKFLGMGEKSDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|315126107|ref|YP_004068110.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Pseudoalteromonas sp.
           SM9913]
 gi|315014621|gb|ADT67959.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Pseudoalteromonas sp.
           SM9913]
          Length = 459

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L + + +I    RL +        E+    + +D+ + V ++ V+++  +   
Sbjct: 2   FENLQERLGKTLKNISGRGRLTEDNIKDTLREVRMAFLEADVALPVVREFVKQVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V E + K +   ++  + + +  P V+++ G+ G GKTT +GKL
Sbjct: 62  VEVTKSLSPGQVFIKIVREELEKAMGEANEELSLN-AQPPAVVMMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K + + + D +R AAI QL+  A   + +F  S+I      +A  A   A+
Sbjct: 121 AKFLKERKKKSVLVVSADVYRPAAIKQLETLATEVNVEFFPSDISQKPVDIATAAISHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+++DTAGRLH +S +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFIDVVLVDTAGRLHVDSDMMDEIKALHHAIN------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG ARGG  + I      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|283798055|ref|ZP_06347208.1| signal recognition particle protein [Clostridium sp. M62/1]
 gi|291074194|gb|EFE11558.1| signal recognition particle protein [Clostridium sp. M62/1]
 gi|295091808|emb|CBK77915.1| signal recognition particle protein [Clostridium cf.
           saccharolyticum K10]
          Length = 452

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++    RL +        E++  L+ +D+   V ++ +  +  +  
Sbjct: 2   AFESLADKLQNVFKNLTGKGRLSEADVKAGLREVKMALLEADVSFKVVKQFINSVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++           ++   VIL+ G+ G GKTT   K
Sbjct: 62  GQDVLNGLNPGQMVIKIVNEELVKLMGSEMTEIALRPANEITVILMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G   +LAA D +R AAI+QLKI  ++          G     +A  A + A 
Sbjct: 122 IAGKLKAKGRSPLLAACDIYRPAAIEQLKINGEKQGVPVFSMGTGHKPVNIAKAAIEHAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRLH +  +M  + ++   +           L ++DA TGQ+A+    
Sbjct: 182 KNGNNVVILDTAGRLHIDEDMMNELVEIKENVS------VDQTLLIVDAMTGQDAVNVAG 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           MF+   G  G+I+TKMDG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 MFNDKIGIDGVILTKMDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|68248720|ref|YP_247832.1| Signal recognition particle protein [Haemophilus influenzae
           86-028NP]
 gi|319896550|ref|YP_004134743.1| signal recognition particle protein [Haemophilus influenzae F3031]
 gi|68056919|gb|AAX87172.1| Signal recognition particle protein [Haemophilus influenzae
           86-028NP]
 gi|317432052|emb|CBY80401.1| Signal recognition particle protein [Haemophilus influenzae F3031]
          Length = 459

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A EA   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|255313924|ref|ZP_05355507.1| signal recognition particle protein [Clostridium difficile
           QCD-76w55]
 gi|255516603|ref|ZP_05384279.1| signal recognition particle protein [Clostridium difficile
           QCD-97b34]
 gi|255649703|ref|ZP_05396605.1| signal recognition particle protein [Clostridium difficile
           QCD-37x79]
 gi|260686457|ref|YP_003217590.1| signal recognition particle protein [Clostridium difficile R20291]
 gi|260212473|emb|CBE03380.1| signal recognition particle protein [Clostridium difficile R20291]
          Length = 450

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+   + + S  +L +        E++  L+ +D+   V +  ++++  +   
Sbjct: 3   FEGLSDKLQGAFSKLKSKGKLTEVDVKNAMREVKLALLEADVNFKVVKDFIKKVQERCVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V+E +  ++  +        S  P ++++VG+ G GKTT  GKL
Sbjct: 63  QEVMQSLTPAQHVIKIVNEELTSLMGDVQSKVMIS-SKPPTILMMVGLQGAGKTTTAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
                  G K +L A D +R AAI QL++  ++            +   +A      A  
Sbjct: 122 GGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDIPVFNMGDKENPVNIAKAGLSHAIK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++IIDTAGRLH + +LMA +  +   +K      PH +L V+D+ TGQ+A+   E 
Sbjct: 182 NANDLVIIDTAGRLHIDEVLMAELKSIKSEVK------PHEILLVVDSMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DG  RGG  + I    + P+ F+G+GE ++D+EPF     ++ I 
Sbjct: 236 FNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIKFMGMGEKLDDIEPFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|297569147|ref|YP_003690491.1| signal recognition particle protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925062|gb|ADH85872.1| signal recognition particle protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 455

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 152/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L++   ++     L ++ +RE + +    L+ +D+   V +  +  +  K   
Sbjct: 2   FDSLSQRLQDVFKNLRGHGTLTEENIREAMREVRLALLEADVNFRVVKDFIASVTEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + + ++L   S         +P VI++VG+ G GKTT  GKL
Sbjct: 62  REVLKSLAPGQQVIKIVHQELVELLGGSSVELELG-GRKPVVIMMVGLQGSGKTTTSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++++   G K  L   D +R AAIDQL + A         S    D   +  +A  +A  
Sbjct: 121 ARRLQGEGKKPYLVPADVYRPAAIDQLTVLAGELEVPVHPSRTDQDPVDICRQAVARAGE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D+L++DTAGRLH +  LM  + ++   L+         +L V DA TGQ+A+   + 
Sbjct: 181 LGCDILLVDTAGRLHVDQELMEELSRIKTALQPA------EILLVADAMTGQDAVAVADK 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     TG+++TK+DG ARGG  + I      P+ F+G+GEG++ LE F     ++ I 
Sbjct: 235 FHQDLSLTGVVLTKLDGDARGGAALSIKKATGRPIKFVGLGEGLDALEVFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GKGD 298


>gi|298484172|ref|ZP_07002338.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           D22]
 gi|295084183|emb|CBK65706.1| signal recognition particle-docking protein FtsY [Bacteroides
           xylanisolvens XB1A]
 gi|298269676|gb|EFI11271.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           D22]
          Length = 319

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 183/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I++ +  +  A K V+ Q +   + + I  +L   +      F+   + +P+VI+VVGVN
Sbjct: 65  IIKRIEKRAAADKYVNTQELNLILRDEIAALLTENNSDDVADFDVPITRKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY+    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP  VL VLD +
Sbjct: 185 VAYDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPDEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F   +F   + G
Sbjct: 305 FRKNEFVDSLFG 316


>gi|301063509|ref|ZP_07204041.1| signal recognition particle protein [delta proteobacterium NaphS2]
 gi|300442448|gb|EFK06681.1| signal recognition particle protein [delta proteobacterium NaphS2]
          Length = 441

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL      +    RL +       +E+   L+ +D+   V +K++E++  +   
Sbjct: 2   FDSLSEKLNRVFKKLKGRGRLTEANIQDALKEVRLALLEADVNYKVVKKLIEDIRERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+++  V++ + +++    K         PH +++VG+ G GKTT   KL
Sbjct: 62  QDVLDSLTPGQQIIKIVNDELARLMGESHKGLELTGEM-PHSLMLVGLQGSGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L   D +R AA+DQLK    +       +E G    A+  +A   A A
Sbjct: 121 AAHLRKRGRQPLLVPADVYRPAAVDQLKKLGLQIDVPVYPTEKGQTPDAICMDAMTGAAA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I DTAGRLH +  LM  +  +   +       P  +L V DA TGQ+A+   + 
Sbjct: 181 QGADIVIFDTAGRLHVDEALMDELVVIKEKVN------PTEILLVADAMTGQDAVNVAKS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG++++KM+G ARGG  + I      P+ F+GVGE I+ LE F     ++ I 
Sbjct: 235 FNETLDITGVVLSKMEGDARGGAALSIKAVTGKPIKFVGVGEKISALELFHPDRMASQIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|114561463|ref|YP_748976.1| signal recognition particle-docking protein FtsY [Shewanella
           frigidimarina NCIMB 400]
 gi|114332756|gb|ABI70138.1| signal recognition particle-docking protein FtsY [Shewanella
           frigidimarina NCIMB 400]
          Length = 587

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 127/310 (40%), Positives = 194/310 (62%), Gaps = 1/310 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
             +   +      +L +G   TS  +  G   +   +++++ + EELE+ L+ +D+GV  
Sbjct: 271 EPQAKPQKEGMFARLKRGLMRTSENIGSGFIGLFRGKKINEELFEELEEQLLIADVGVET 330

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             K+++ L      K +     LYD+  E + KML P++ P   D ++ P VIL++GVNG
Sbjct: 331 TNKLIKSLTEHASRKQLKDAEALYDLMREEMQKMLDPVAIPLVPDNANGPFVILMIGVNG 390

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+K+    G  VMLAAGDTFR+AA++QL++W  R +   V    G+D+A++
Sbjct: 391 VGKTTTIGKLAKQYQSQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVVAQHTGADSASV 450

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+KVDVLI DTAGRL N S LM  + K++RV+K+LDP +PH V+  LDA+T
Sbjct: 451 IFDALQAAKARKVDVLIADTAGRLQNKSHLMEELKKVVRVMKKLDPDSPHEVMLTLDAST 510

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q ++F    G TG+ ++K+DGTA+GG +  I     IP+  +GVGE I+DL  F
Sbjct: 511 GQNAISQAQLFKEAVGVTGITISKLDGTAKGGVIFAIADKFSIPIRHIGVGEQIDDLRTF 570

Query: 302 VAKDFSAVIT 311
            + DF   + 
Sbjct: 571 NSNDFIEALF 580


>gi|254974797|ref|ZP_05271269.1| signal recognition particle protein [Clostridium difficile
           QCD-66c26]
 gi|255092185|ref|ZP_05321663.1| signal recognition particle protein [Clostridium difficile CIP
           107932]
 gi|260682859|ref|YP_003214144.1| signal recognition particle protein [Clostridium difficile CD196]
 gi|260209022|emb|CBA62118.1| signal recognition particle protein [Clostridium difficile CD196]
          Length = 452

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+   + + S  +L +        E++  L+ +D+   V +  ++++  +   
Sbjct: 3   FEGLSDKLQGAFSKLKSKGKLTEVDVKNAMREVKLALLEADVNFKVVKDFIKKVQERCVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V+E +  ++  +        S  P ++++VG+ G GKTT  GKL
Sbjct: 63  QEVMQSLTPAQHVIKIVNEELTSLMGDVQSKVMIS-SKPPTILMMVGLQGAGKTTTAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
                  G K +L A D +R AAI QL++  ++            +   +A      A  
Sbjct: 122 GGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDIPVFNMGDKENPVNIAKAGLSHAIK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++IIDTAGRLH + +LMA +  +   +K      PH +L V+D+ TGQ+A+   E 
Sbjct: 182 NANDLVIIDTAGRLHIDEVLMAELKSIKSEVK------PHEILLVVDSMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DG  RGG  + I    + P+ F+G+GE ++D+EPF     ++ I 
Sbjct: 236 FNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIKFMGMGEKLDDIEPFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|304311868|ref|YP_003811466.1| Signal recognition particle protein [gamma proteobacterium HdN1]
 gi|301797601|emb|CBL45822.1| Signal recognition particle protein [gamma proteobacterium HdN1]
          Length = 464

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S ++   +  +    +L +        E+   L+ +D+ + V +  +E++  +   
Sbjct: 2   FENLSERISSSLRHLSGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFIEQVKERAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V+E +  ++   +   N      P VIL+ G+ G GKTT + KL
Sbjct: 62  QEVMKSLSPDQAFIKIVNEQLIHVMGDANDELNLAC-QPPAVILMAGLQGAGKTTTVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      KVM+A+ D +R AAI QL+  AD   A F  S I  D   +A  A +QA+
Sbjct: 121 AAFLIGRQKKKVMVASADVYRPAAIKQLETLADAVGAQFFPSTIEQDPVDIASAAIEQAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +D++IIDTAGRL  +  +M  I ++   +       P   L V+DA TGQ+A     
Sbjct: 181 KKFMDIVIIDTAGRLAVDQEMMDEIRRLHAAIT------PIETLFVVDAMTGQDAANTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFGEALPLTGVVLTKTDGDARGGAALSVRAITGKPIKFIGVGEKTDALEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|134299902|ref|YP_001113398.1| signal recognition particle protein [Desulfotomaculum reducens
           MI-1]
 gi|134052602|gb|ABO50573.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfotomaculum reducens MI-1]
          Length = 446

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 151/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F     +L E    +    RL +        E++  L+ +D+   V ++ V ++  +   
Sbjct: 2   FKGLGERLDEIFKSLKGKGRLTEDDVNHAMREVKMALLEADVNFKVVKEFVAQVKGRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V + + ++L       N      P +I++VG+ G GKTT  GKL
Sbjct: 62  QDVLESLSPAQQVIKIVRDELTELLGGTQAKINLS-PKPPTIIMLVGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +S  G + ++ AGD +R AAI QL++  D+ +          +   +A  A +QA +
Sbjct: 121 AKLLSKQGRRPLMVAGDIYRPAAIKQLQVLGDQLNIPVFSMG-QENPVKIAQSAVEQANS 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++IIDTAGRLH N  LM  +  +   +       PH +L V+DA TGQ A+   + 
Sbjct: 180 TGRDLVIIDTAGRLHINEELMDELANIKSTV------RPHEILLVVDAMTGQEAVNVADT 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G++MTK+DG ARGG  + +      P+ F G+GE ++ LEPF     +  I 
Sbjct: 234 FNQKLGLDGIVMTKLDGDARGGAALSVRKVTGTPIKFAGMGEKLDALEPFYPDRMADRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|224024936|ref|ZP_03643302.1| hypothetical protein BACCOPRO_01667 [Bacteroides coprophilus DSM
           18228]
 gi|224018172|gb|EEF76170.1| hypothetical protein BACCOPRO_01667 [Bacteroides coprophilus DSM
           18228]
          Length = 321

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 184/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVN 120
           I++ +  +    K V+ Q +   + E I  +L       S+ F+     +P+VI+VVGVN
Sbjct: 65  IIKRIEARVARDKYVNTQELNNILREEIAALLTENNTVDSEDFSVPEDKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVVKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A + DV+IIDTAGRLHN   LM  + K+  V++++ P APH VL VLD +
Sbjct: 185 VAFDTLSSAVANQADVVIIDTAGRLHNKIGLMNELTKIKNVMRKVVPDAPHEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F        + +TK+DGTA+GG +I I    KIPV ++G+GEGI DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVNAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  ++F   + G
Sbjct: 305 FRRREFVDSLFG 316


>gi|291546242|emb|CBL19350.1| signal recognition particle protein [Ruminococcus sp. SR1/5]
          Length = 450

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 151/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+     +    RL +       +E++  L+ +D+   V ++  + +  K  
Sbjct: 2   AFESLTDKLQNVFKKLKGKGRLTEADVKVALKEVKMALLEADVNFKVVKQFTKSVQEKAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V++ +  ++   +            V+++VG+ G GKTT + K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNDELVNLMGSETTELPIKPGMDLTVLMMVGLQGAGKTTTVAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+   G + +L A D +R AAI QL++  ++   +        +   +A  A + A+
Sbjct: 122 LAGKLKSKGKRPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQNPVDIAKAAIEHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           + + +V++IDTAGRLH +  +M  +  +   +         + + V+DA TGQ+A+   +
Sbjct: 182 SNQQNVVLIDTAGRLHIDEDMMQELEDIKANVN------VDATVLVVDAMTGQDAVNVAQ 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I+TKMDG  RGG  + I      P++++G+GE ++DLE F  +  ++ I
Sbjct: 236 NFSDKVGIDGVILTKMDGDTRGGAALSIKAVTGKPIFYVGMGEKLSDLEQFYPERMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|332981635|ref|YP_004463076.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mahella
           australiensis 50-1 BON]
 gi|332699313|gb|AEE96254.1| signal recognition particle subunit FFH/SRP54 (srp54) [Mahella
           australiensis 50-1 BON]
          Length = 438

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 88/300 (29%), Positives = 155/300 (51%), Gaps = 17/300 (5%)

Query: 25  SLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYAKDV- 79
           + KL+     +    +L +  V+E + D    L+ +D+  AV ++ V ++  K   + V 
Sbjct: 2   TEKLQSAFKKLTGKGKLSESDVKEAMRDVRMALLEADVNYAVVKEFVNKVTEKAIGQGVL 61

Query: 80  ----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 Q+V+  V+E + +++        W  S  P VI++VG+ G GKTT   KL+  +
Sbjct: 62  ESLTPGQQVIKIVNEQLIELMGSSQSKIKW-ASAPPTVIMMVGLQGSGKTTTSAKLAGYL 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           +  G   +L A D +R AA+ QL+I   + +      E G++  A++ +A + A+    D
Sbjct: 121 AKQGKNPLLVACDIYRPAAVKQLQIVGQKVNIPVFSLE-GANPVAISQQALEYAKKHSND 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+I+DTAGRLH +  +M  +  +   +       P  +L V+DA TGQ+A+   + F+  
Sbjct: 180 VVILDTAGRLHIDDEMMQELEDIKSSVH------PDEILLVVDAMTGQDAVNVAKNFNER 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               G+++TK+DG  RGG  + +      P+ F+G+GE ++DLEPF     ++ I G  D
Sbjct: 234 LAIDGVVLTKLDGDTRGGAALSVKAVTGKPIKFVGMGEKLDDLEPFHPDRIASRILGMGD 293


>gi|153810630|ref|ZP_01963298.1| hypothetical protein RUMOBE_01014 [Ruminococcus obeum ATCC 29174]
 gi|149833026|gb|EDM88108.1| hypothetical protein RUMOBE_01014 [Ruminococcus obeum ATCC 29174]
          Length = 448

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 148/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+     +    RL +       +E++  L+ +D+   V ++  + +  +  
Sbjct: 2   AFESLTDKLQNVFKKLRGKGRLTEEDVKIALKEVKMALLEADVNFRVVKQFTKSVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +        +   V+++ G+ G GKTT + K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEELVNLMGSETTDLPLKPGNDITVLMMAGLQGAGKTTTVAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+   G + +L A D +R AAI QL++  ++   +        +   +A  A + A+
Sbjct: 122 LAGKLKSKGKRPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQNPVDIAKAAIEHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A + +V++IDTAGRLH +  +M  +  +   +           +  +DA TGQ+A+   +
Sbjct: 182 ANQQNVVLIDTAGRLHVDEDMMQELADIKANVN------VDCTILTVDAMTGQDAVNVAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I+TKMDG  RGG  + I      P+ F+G+GE ++DLE F  +  ++ I
Sbjct: 236 TFAEKVGIDGVILTKMDGDTRGGAALSIKAVTGKPILFVGMGEKLSDLEQFYPERMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|22299516|ref|NP_682763.1| signal recognition particle protein [Thermosynechococcus elongatus
           BP-1]
 gi|22295699|dbj|BAC09525.1| signal recognition particle protein [Thermosynechococcus elongatus
           BP-1]
          Length = 469

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 139/304 (45%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L+     +    ++ +        E+   L+ +D+ + VA+  +E +  +   
Sbjct: 2   FDALAERLESAWKTLRGQDKITENNIQEALREVRRALLEADVNLQVAKDFIENVRQRAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + +++     P        P +IL+ G+ G GKTT   KL
Sbjct: 62  AEVIAGVRPDQQFIKIVYDALVEVMGESHSPL-AHVEPPPTIILMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAIDQL     +                +A +   +A+ 
Sbjct: 121 ALHLRKEGRSTLLVATDVYRPAAIDQLMTLGKQIGVPVFEMGTEVSPVEIARQGVAKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VD +IIDTAGRL  ++ +MA +  +   ++      PH  L V+DA TGQ A      
Sbjct: 181 LGVDTVIIDTAGRLQIDAEMMAELAAIKEGVQ------PHETLLVVDAMTGQEAANLTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TK+DG  RGG  + +      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FHEQVGITGAILTKLDGDTRGGAALSVRQVSGQPIKFIGVGEKVEALQPFYPDRLASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|326204801|ref|ZP_08194655.1| signal recognition particle protein [Clostridium papyrosolvens DSM
           2782]
 gi|325985013|gb|EGD45855.1| signal recognition particle protein [Clostridium papyrosolvens DSM
           2782]
          Length = 436

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 153/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+E I  I    R+ +     +  E++  L+ +D+   V ++ + ++  +   
Sbjct: 4   FEGLSGKLQETIKKIRGQGRVSEKDVKDMMREIKLALLEADVNFKVVKEFISKVSERAVG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+V+  V E + ++L        +  S  P + ++ G+ G GKTT  GKL
Sbjct: 64  SDVLESLTPGQQVVKIVHEELIELLGREQSKVTF-ASKPPTIFMMAGLQGAGKTTTAGKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL++  ++ +      E   +   +A EA   A+ 
Sbjct: 123 ANLLRKQGKNPLLVACDVYRPAAIKQLQVLGNQLNIPVFTLEDNQNPVQIAKEAVSFAEK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K+ D++IIDTAGRLH +  LM  +  +   +K      PH +L V+D+ TGQ+A+   E 
Sbjct: 183 KQHDLVIIDTAGRLHIDEKLMDELLNIKNSVK------PHEILLVVDSMTGQDAVNVSET 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DG  RGG  + +      P+ F  +GE +ND+EPF     ++ I 
Sbjct: 237 FNKKLGIDGVVLTKLDGDTRGGAALSVKSVTGKPIKFAAMGEKLNDIEPFFPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|94265751|ref|ZP_01289487.1| Cell division transporter substrate-binding protein FtsY [delta
           proteobacterium MLMS-1]
 gi|93453726|gb|EAT04104.1| Cell division transporter substrate-binding protein FtsY [delta
           proteobacterium MLMS-1]
          Length = 367

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 118/306 (38%), Positives = 184/306 (60%), Gaps = 3/306 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   +  +L +    T       + ++    + +DD + EELE+LLI SD+G A A +++
Sbjct: 57  EDKGFFGRLKEQLGRTREGFIHRLDELFLGRKDIDDELFEELEELLITSDLGAATAMELL 116

Query: 68  EELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKT 125
           +    +    D+S    L   + +L+ + L+   +P         P VI+V+GVNGVGKT
Sbjct: 117 DRARARIKRDDLSEPAALREILQQLLLEYLVKAERPAELVMPESGPFVIMVLGVNGVGKT 176

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K  +AG +V+L A DTFR+AAI+QL+ WA+R   + V  + G+D +++ Y+A
Sbjct: 177 TTIGKLAWKFKNAGQRVLLVAADTFRAAAIEQLQAWAERVGVEVVAQQQGADPSSVIYDA 236

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           F  A+ +  DV+I+DTAGRLH    LM  + K+ RV+ +  P APH V+ V+DATTGQN 
Sbjct: 237 FDYARPRDFDVIIVDTAGRLHTKVNLMEELRKVKRVMSKKIPGAPHEVMLVIDATTGQNG 296

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q ++FH     +G+ +TK+DGTARGG ++ I     IP+ F+G+GE + DL  F  ++
Sbjct: 297 ISQAKLFHQAVDVSGIALTKLDGTARGGIVVNISREFNIPIRFIGIGEKMEDLRDFDPRE 356

Query: 306 FSAVIT 311
           F + I 
Sbjct: 357 FVSAIF 362


>gi|295100363|emb|CBK97908.1| signal recognition particle-docking protein FtsY [Faecalibacterium
           prausnitzii L2-6]
          Length = 313

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 122/298 (40%), Positives = 177/298 (59%), Gaps = 4/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            K+  G   T       I + ++  ++DD + +ELE+ LI +D+G  VA K+V+ L  + 
Sbjct: 12  DKMKDGLEKTRTGFWGNILNTLTGSKIDDDLYDELEEQLILADVGGDVAMKLVDALRDRV 71

Query: 75  YAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             K +       D + ++I   + P ++         P V+LV+GVNGVGKTT I KL+ 
Sbjct: 72  QEKGLKTGEQAADALRDIIADEMRPETE---MALDGHPAVLLVIGVNGVGKTTSIAKLAD 128

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
             +  G KVMLAAGDTFR+AA +QL+IWA R     V +  G+D AA+ ++  K A A+ 
Sbjct: 129 YYTRQGKKVMLAAGDTFRAAASEQLEIWAGRAGVPIVKAGEGADPAAVIFDTVKSATARG 188

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D++I DTAGRLHN S LM+ + K+ R +++  P A    L VLDA TGQNA+ Q + F 
Sbjct: 189 YDMVIADTAGRLHNKSNLMSELSKISRSVRKAAPEASLETLLVLDAITGQNAISQAKEFC 248

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             A  TG+I+TK+DGTARGG ++ +     +PV F+GVGEGI+DL PF  + F   + 
Sbjct: 249 KAADATGIILTKLDGTARGGCVVAVKQRLGLPVRFIGVGEGIDDLIPFTPEGFVEELI 306


>gi|160946003|ref|ZP_02093229.1| hypothetical protein FAEPRAM212_03536 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443734|gb|EDP20739.1| hypothetical protein FAEPRAM212_03536 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103254|emb|CBL00798.1| signal recognition particle-docking protein FtsY [Faecalibacterium
           prausnitzii SL3/3]
          Length = 312

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 121/298 (40%), Positives = 178/298 (59%), Gaps = 4/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            K+  G   T       I + ++   +DD + ++LE+ LI +D+G  VA  +V++L  + 
Sbjct: 12  DKMKTGLEKTRTGFWGSIMNTLTGSVIDDEMYDDLEEQLILADVGGEVAVHLVDKLRDRV 71

Query: 75  YAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             K +       D + ++I + + P ++        +P VILV+GVNGVGKTT I KL+ 
Sbjct: 72  RDKGLKTGEQAADALRDIIAEEMTPEAE---MALDGKPAVILVIGVNGVGKTTSIAKLAD 128

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
             +  G +VMLAAGDTFR+AA +QL+IWA R     V +  G+D AA+ ++  K A A+ 
Sbjct: 129 YYTRQGKRVMLAAGDTFRAAASEQLEIWASRAGVPIVSAGEGADPAAVIFDTVKSATARG 188

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D++I DTAGRLHN S LMA + K+ R +K+  P A    L VLDA TGQNA+ Q + F 
Sbjct: 189 YDMVIADTAGRLHNKSNLMAELSKISRSVKKASPEASLETLLVLDAITGQNAISQAKEFC 248

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             A  TG+I+TK+DGTA+GG ++ +     +PV F+GVGEGI+DL PF  + F   + 
Sbjct: 249 KAADATGIILTKLDGTAKGGCVVAVKQRLGLPVRFIGVGEGIDDLLPFTPEGFVEELL 306


>gi|15603048|ref|NP_246120.1| hypothetical protein PM1183 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721534|gb|AAK03267.1| Ffh [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 458

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FENLSDRLSKTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINKVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  +   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVNKSLTPGQEFVKIVQAELEAAMGEANESLHLS-TQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A    ADF  S++  +   +A  A  +A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLETLAQAVGADFFPSDVSQNPVQIAQAALSEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDGEMMDEIKQIHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF  +  ++ I
Sbjct: 235 SFNEALPLTGVVLTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|209525658|ref|ZP_03274195.1| signal recognition particle-docking protein FtsY [Arthrospira
           maxima CS-328]
 gi|209493827|gb|EDZ94145.1| signal recognition particle-docking protein FtsY [Arthrospira
           maxima CS-328]
          Length = 530

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 109/314 (34%), Positives = 183/314 (58%), Gaps = 5/314 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            ++VA E ++W++KL KG   T   L   +  I+    L+    EE+E LL+++D+GV  
Sbjct: 215 PEEVAVEEITWLQKLWKGLGRTRRNLLNQLKAIVGQGPLNQAAVEEIEALLLQADVGVEA 274

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVG 118
              I+E L  +     +  +  +  + +L+  +L         P       + ++ L+ G
Sbjct: 275 TDVIIEALQNRLLEDALPPEDAIAYLKQLLRDLLEKPYQNGYSPTFAPEKEQLNIWLITG 334

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNG GKTT IGK++     +  + ++AAGDTFR+AA++Q+K+W +R+  + + +    +D
Sbjct: 335 VNGAGKTTTIGKIAHIAQKSDYRTLIAAGDTFRAAAVEQVKVWGERSGVEVIANPGKNTD 394

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A   A++++ ++L+IDTAGRL N   LM  + K+ RV+ +  P A    L VL
Sbjct: 395 PAAVVYDAIAAAKSRETELLVIDTAGRLQNKKNLMEELNKIRRVIDKQAPDAKVESLLVL 454

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+T GQN LRQ ++F  VA  +G+++TK+DGTA+GG  + +V    +P+ F+GVGE I D
Sbjct: 455 DSTLGQNGLRQAQVFAEVAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGVGESIED 514

Query: 298 LEPFVAKDFSAVIT 311
           L PF + +F   + 
Sbjct: 515 LRPFSSYEFIEALL 528


>gi|54298660|ref|YP_125029.1| hypothetical protein lpp2724 [Legionella pneumophila str. Paris]
 gi|53752445|emb|CAH13877.1| hypothetical protein lpp2724 [Legionella pneumophila str. Paris]
          Length = 355

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 133/310 (42%), Positives = 189/310 (60%), Gaps = 3/310 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           K  S   S   +  KG + T  +L EGI+ ++   + +   + EELE LLI +D+G+   
Sbjct: 41  KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNG 121
           Q ++++L      K +S    +Y  +   +  +L    KP + +     P VIL+VGVNG
Sbjct: 101 QDVLKQLNEGLARKQLSNGEAVYQTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 160

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+K+    G +VMLAAGDTFR+AA++QL +W +R     +    G+D+A++
Sbjct: 161 AGKTTTIGKLAKQFQKQGKRVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+K+DVLI DTAGRLH  S LM  + K+ RV+++LDP APH  + VLDA+ 
Sbjct: 221 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + FH     TG+ MTK+DGTA+GG L  I     IP  +LGVGEGI DL PF
Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340

Query: 302 VAKDFSAVIT 311
            A  F + I 
Sbjct: 341 DAAQFVSAIF 350


>gi|308187876|ref|YP_003932007.1| Signal recognition 54 kDa protein (SRP54) [Pantoea vagans C9-1]
 gi|308058386|gb|ADO10558.1| Signal recognition 54 kDa protein (SRP54) [Pantoea vagans C9-1]
          Length = 453

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FDNLTDRLSQTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV+      Q  +  V   +   +   +   +   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HDVNKSLTPGQEFIKIVRNELVAAMGAENNALDL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A +   DF  S++      +   A ++A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSDLSQKPVDIVNNALREAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ F+GVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|54295510|ref|YP_127925.1| hypothetical protein lpl2597 [Legionella pneumophila str. Lens]
 gi|53755342|emb|CAH16838.1| hypothetical protein lpl2597 [Legionella pneumophila str. Lens]
          Length = 355

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 134/310 (43%), Positives = 189/310 (60%), Gaps = 3/310 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           K  S   S   +  KG + T  +L EGI+ ++   + +   + EELE LLI +D+G+   
Sbjct: 41  KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNG 121
           Q ++++L      K +S    +Y  +   +  +L    KP + +     P VIL+VGVNG
Sbjct: 101 QDVLKQLNEGLARKQLSNGDAVYQTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 160

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL +W +R     +    G+D+A++
Sbjct: 161 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+K+DVLI DTAGRLH  S LM  + K+ RV+++LDP APH  + VLDA+ 
Sbjct: 221 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + FH     TG+ MTK+DGTA+GG L  I     IP  +LGVGEGI DL PF
Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340

Query: 302 VAKDFSAVIT 311
            A  F + I 
Sbjct: 341 DAAQFVSAIF 350


>gi|304399182|ref|ZP_07381049.1| signal recognition particle protein [Pantoea sp. aB]
 gi|304353236|gb|EFM17616.1| signal recognition particle protein [Pantoea sp. aB]
          Length = 453

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FDNLTDRLSQTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV+      Q  +  V   +   +   +   +   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HDVNKSLTPGQEFIKIVRNELVAAMGAENNALDL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A +   DF  S++      +   A ++A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSDLSQKPVDIVNNALREAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ F+GVGE    LEPF  +  ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|15827854|ref|NP_302117.1| signal recognition particle protein [Mycobacterium leprae TN]
 gi|221230331|ref|YP_002503747.1| signal recognition particle protein [Mycobacterium leprae Br4923]
 gi|3334343|sp|O33013|SRP54_MYCLE RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|2251154|emb|CAB10614.1| Ffh protein [Mycobacterium leprae]
 gi|13093406|emb|CAC30573.1| signal recognition particle protein [Mycobacterium leprae]
 gi|219933438|emb|CAR71717.1| signal recognition particle protein [Mycobacterium leprae Br4923]
          Length = 521

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   I  +    RL D   E    E+   L  +D+ + V +  V  +  +   
Sbjct: 2   FESLSNRLTGVIQGLRGKGRLTDADIEATTREIRLALFEADVSLPVVRAFVHRIKERARG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++   +     P V+++ G+ G GKTT+ GKL
Sbjct: 62  TEVSAALNPAQQIVKIVNEELIGILGGETRQLAF-AKTPPTVVMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-------GSDAAALAYE 184
           + ++   G   +L A D  R AA++QL++  +R                   D  A+A  
Sbjct: 121 AVRLRRQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPDSGPGDPVAVASA 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+AK  DV+I+DTAGRL  +  LMA  G +   +       P  VL VLDA  GQ+
Sbjct: 181 GLVEARAKHFDVVIVDTAGRLGIDDELMAQAGAIREAIN------PDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+     F A  G TG+++TK+DG ARGG  + +     +P+ F   GE ++D + F   
Sbjct: 235 AVTTAAAFGAGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFATTGEKLDDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|270158989|ref|ZP_06187645.1| signal recognition particle protein [Legionella longbeachae D-4968]
 gi|289166170|ref|YP_003456308.1| signal recognition particle protein Ffh [Legionella longbeachae
           NSW150]
 gi|269987328|gb|EEZ93583.1| signal recognition particle protein [Legionella longbeachae D-4968]
 gi|288859343|emb|CBJ13279.1| putative signal recognition particle protein Ffh [Legionella
           longbeachae NSW150]
          Length = 459

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L     ++    RL +        E+   L+ +D+ + V ++ +E++  K   
Sbjct: 2   FETLTERLTRTFKNLRGLGRLTEENVQHALREVRLSLLEADVALPVIKEFIEQVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + +  ++       N+  +  P + L+ G+ G GKTT   KL
Sbjct: 62  QEVLTHLNPDQAFVKIVHDELIHVMGDERAELNFK-TQPPAIFLMAGLQGSGKTTSTAKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KVM+ + D +R AAI QLK+ A++    F  +E+      +A +A   A+
Sbjct: 121 ARYLKESENKKVMVVSVDVYRPAAIQQLKVLAEQIGVGFFPAEVSEQPLTIARKALDAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVLIIDTAGRLH ++ +MA I ++ + +       P   L V+D+ TGQ+A    +
Sbjct: 181 KQYMDVLIIDTAGRLHIDADMMAEIKELHQAVN------PIETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK DG ARGG  + +      P+ F+G GE ++ LEPF  +  ++ I
Sbjct: 235 AFHEALPLTGVILTKTDGDARGGAALSVKQITGQPIKFIGSGEKVDALEPFHPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|167461706|ref|ZP_02326795.1| signal recognition particle [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 432

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + +L+     + S  +L +        E+   L+ +D+   V ++ + ++  +   
Sbjct: 3   FEGLTNRLQNVFGKLRSKGKLSENDVNEALREVRLALLEADVNFKVVKQFISKVKERAVG 62

Query: 77  KDVSVQRV-----LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V          +  V++ + +++           +  P ++++VG+ G GKTT  GKL
Sbjct: 63  QEVMKSFTPGMVVIDIVNKELTELMGGTQSKLAKS-NRPPSIVMMVGLQGAGKTTTTGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K ++    K +L A D +R AAI QL++  ++            +   +A    + A+ 
Sbjct: 122 AKLLTKQNHKPLLVACDIYRPAAIKQLQVLGEQLQVPVFSMGDQVNPVDIAKAGIQHAKD 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +IIDTAGRLH +  LM  + ++   ++      P  +L V+DA TGQ+A+   E 
Sbjct: 182 NHYDYVIIDTAGRLHIDESLMEELKQVREAVE------PDEILLVVDAMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     TG+++TK+DG  RGG  I +      P+ F  +GE ++ LEPF  +  ++ I 
Sbjct: 236 FHKQMELTGVVLTKLDGDTRGGAAISVKAVTGCPIKFAAMGEKMDALEPFHPERMASRIL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDM 300


>gi|228476757|ref|ZP_04061423.1| signal recognition particle protein [Streptococcus salivarius
           SK126]
 gi|228251628|gb|EEK10729.1| signal recognition particle protein [Streptococcus salivarius
           SK126]
          Length = 520

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 148/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    +L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNLRRKGKLSEKEVQEVTKEIRLALLEADVALPVVKTFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++     + Q+++  V+E + ++L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDASQQIIKIVNEELTEILGSETSEIEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + M+ A D +R AAIDQLK    + +         + A  +     +QA
Sbjct: 121 LANKLIKEQEARPMMIAADIYRPAAIDQLKTLGQQINVPVFDMGTETPAVEIVKNGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A K D ++IDTAGRL  +  LM  +  +       D   P+ +L V+D+  GQ A    
Sbjct: 181 RANKNDYVLIDTAGRLQIDETLMQELHDIK------DFAHPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 KEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|296139328|ref|YP_003646571.1| signal recognition particle protein [Tsukamurella paurometabola DSM
           20162]
 gi|296027462|gb|ADG78232.1| signal recognition particle protein [Tsukamurella paurometabola DSM
           20162]
          Length = 522

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 93/317 (29%), Positives = 147/317 (46%), Gaps = 29/317 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ +    RL D   +    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLGGALSGLRGKGRLTDADIDATAREIRLALLEADVALPVVRAFVSRIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++  N      P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQIVKIVNEELVGILGGETRRINL-AKTPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-------------DA 178
           +  +   G   ML A D  R  A+DQLKI  +R          G+             D 
Sbjct: 121 AHHLKKQGHTPMLVACDLQRPGAVDQLKIVGERAGVPTYAPHPGTSVGGEGTLGVSAADP 180

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A    ++A+AK+ DV+I+DTAGRL  +  LM     +       D   P  VL VLD
Sbjct: 181 VEVARGGIEEAKAKQHDVVIVDTAGRLGIDEELMGQARAI------RDAVDPDEVLFVLD 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+   + F      TG+++TK+DG ARGG  + +      P+ F   GE ++D 
Sbjct: 235 AMIGQDAVTTAQAFAEGVDFTGVVLTKLDGDARGGAALSVREITGKPILFASTGEKLDDF 294

Query: 299 EPFVAKDFSAVITGCLD 315
           + F     S+ I G  D
Sbjct: 295 DVFHPDRMSSRILGMGD 311


>gi|83589811|ref|YP_429820.1| signal recognition particle-docking protein FtsY [Moorella
           thermoacetica ATCC 39073]
 gi|83572725|gb|ABC19277.1| signal recognition particle-docking protein FtsY [Moorella
           thermoacetica ATCC 39073]
          Length = 311

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 190/312 (60%), Gaps = 4/312 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +++  +L +G   T   L   + +++  S RLDD   +ELE++L+ +D+G   + ++VE 
Sbjct: 1   MNFFSRLKEGLNKTRENLTRRVGELLAGSSRLDDDFFDELEEILLTADVGARTSMELVER 60

Query: 70  LLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   + ++    +   + E + +ML        W     P VILVVGVNG GKTT I
Sbjct: 61  LRREVRDRKITDPAAVGSLLQEEVARMLGEEVPRLVW-APEPPTVILVVGVNGAGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ + +  G +V+LAA DTFR+AA +QL +WA+R  A  +  + G+D AA+ Y A + 
Sbjct: 120 GKLACRFAREGKRVILAAADTFRAAAGEQLAVWAERAGAGLIRHQAGADPAAVVYAAIQS 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ ++ DV+++DTAGRL   + LM  + K+ RV++R  P +PH VL VLDATTGQNAL Q
Sbjct: 180 ARNRRADVVLVDTAGRLQTKTNLMEELKKIRRVMERELPGSPHEVLLVLDATTGQNALSQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F    G TG+ +TK+DGTA+GG ++ I     IPV  +G+GEG +DL+ F  +DF+A
Sbjct: 240 ARLFSEAVGVTGIALTKLDGTAKGGVILGIAAEMGIPVKLVGLGEGPDDLKEFQPRDFAA 299

Query: 309 VIT-GCLDYGEE 319
            +  G     EE
Sbjct: 300 ALFSGLAGEKEE 311


>gi|307611546|emb|CBX01226.1| hypothetical protein LPW_29241 [Legionella pneumophila 130b]
          Length = 355

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 134/310 (43%), Positives = 189/310 (60%), Gaps = 3/310 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           K  S   S   +  KG + T  +L EGI+ ++   + +   + EELE LLI +D+G+   
Sbjct: 41  KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNG 121
           Q ++++L      K +S    +Y  +   +  +L    KP + +     P VIL+VGVNG
Sbjct: 101 QDVLKQLNEGLARKQLSNGDAVYQTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 160

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL +W +R     +    G+D+A++
Sbjct: 161 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+K+DVLI DTAGRLH  S LM  + K+ RV+++LDP APH  + VLDA+ 
Sbjct: 221 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + FH     TG+ MTK+DGTA+GG L  I     IP  +LGVGEGI DL PF
Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340

Query: 302 VAKDFSAVIT 311
            A  F + I 
Sbjct: 341 DAAQFVSAIF 350


>gi|227551902|ref|ZP_03981951.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Enterococcus faecium
           TX1330]
 gi|257884147|ref|ZP_05663800.1| signal recognition particle protein [Enterococcus faecium
           1,231,501]
 gi|257886935|ref|ZP_05666588.1| signal recognition particle protein [Enterococcus faecium
           1,141,733]
 gi|257895507|ref|ZP_05675160.1| signal recognition particle protein [Enterococcus faecium Com12]
 gi|257898122|ref|ZP_05677775.1| signal recognition particle protein [Enterococcus faecium Com15]
 gi|293378372|ref|ZP_06624541.1| signal recognition particle protein [Enterococcus faecium PC4.1]
 gi|293571524|ref|ZP_06682547.1| signal recognition particle protein [Enterococcus faecium E980]
 gi|227178974|gb|EEI59946.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Enterococcus faecium
           TX1330]
 gi|257819985|gb|EEV47133.1| signal recognition particle protein [Enterococcus faecium
           1,231,501]
 gi|257822989|gb|EEV49921.1| signal recognition particle protein [Enterococcus faecium
           1,141,733]
 gi|257832072|gb|EEV58493.1| signal recognition particle protein [Enterococcus faecium Com12]
 gi|257836034|gb|EEV61108.1| signal recognition particle protein [Enterococcus faecium Com15]
 gi|291608390|gb|EFF37689.1| signal recognition particle protein [Enterococcus faecium E980]
 gi|292643236|gb|EFF61377.1| signal recognition particle protein [Enterococcus faecium PC4.1]
          Length = 472

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ +  +    ++ +  V+E   E+   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTERLQQAMGKLRKKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +   L   +   N      P VI++ G+ G GKTT  GK
Sbjct: 62  GAEVLESLSPAQQIVKIVDEELTITLGSETAELNKS-PKIPTVIMMAGLQGAGKTTFTGK 120

Query: 131 LSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAIDQLK+   +                +  +  + A
Sbjct: 121 LANYLKKNENARPLLIAGDVYRPAAIDQLKVLGQQLDVPVFDMGTEVSPVEIVRQGMELA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D ++IDTAGRLH +  LM  + ++  + +      P+ +L V+DA TGQ+A+   
Sbjct: 181 REKKNDYVLIDTAGRLHIDETLMDELKQIKELTQ------PNEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F+G GE + DLE F     ++ 
Sbjct: 235 DSFNQQLGITGVVITKLDGDTRGGAALSIRSVTGAPIKFIGSGEKLTDLEVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|152997772|ref|YP_001342607.1| signal recognition particle protein [Marinomonas sp. MWYL1]
 gi|150838696|gb|ABR72672.1| signal recognition particle protein [Marinomonas sp. MWYL1]
          Length = 460

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  I    +L +     V  E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDNLSNRLTSSLDRIRGRAKLTEDNIQEVLREVRMALLEADVALPVVKDFIAAVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  L  V + +  ++   +   N   + RP VIL+ G+ G GKTT   KL
Sbjct: 62  TEVSKSLSPGQVFLKIVKQELENVMGQANDGLNLRAA-RPAVILLAGLQGAGKTTSAAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +       V + + D +R AAI QL+  A     DF+ S++      +   A   A+
Sbjct: 121 AKYLKEREKKSVSVVSADVYRPAAIKQLETLAGEVGVDFIPSDLSQKPIDIVNNAIDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRL  +  +MA I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KAHKDVLIVDTAGRLSIDEDMMAEIKALHAAVN------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F  V   TG+I+TK DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDVLPLTGVILTKTDGDARGGAALSVRHITGKPIKFLGVGEKTSALEPFHPDRLASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|291519525|emb|CBK74746.1| signal recognition particle protein [Butyrivibrio fibrisolvens
           16/4]
          Length = 446

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 142/305 (46%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++ S  RL +       +E++  L+ +D+   V ++    +  +  
Sbjct: 2   AFDSLSEKLQGVFKNLRSKGRLSEADVKAALKEVKMALLEADVNFKVVKQFTNTVTERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q V+  V+E +  ++        +        I++VG+ G GKTT   K
Sbjct: 62  GSDVMNGLNPGQMVIKIVNEELVNLMGSEVTDITYGTGGAITTIMMVGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+   G K +L A D +R AAI+QL+I   +   +            +A EA   A+
Sbjct: 122 LAGKVKQRGKKPLLVACDIYRPAAIEQLQINGKKQGVEVFSLGDKEKPVKIAKEAMDYAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I DTAGRLH +  +M  +  +   +  L+       + V+DA TGQ+A+    
Sbjct: 182 KNGFDVVIFDTAGRLHIDEDMMNELASIKSNIDILN------TILVVDAMTGQDAVNVSS 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I+TK+DG  RGG  + I      P+ + G+GE ++DLE F     ++ I
Sbjct: 236 TFDEKIGIDGVIITKLDGDTRGGAALSIKAVTGKPILYAGMGEKLSDLEQFHPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|119510388|ref|ZP_01629522.1| Cell division transporter substrate-binding protein FtsY [Nodularia
           spumigena CCY9414]
 gi|119464917|gb|EAW45820.1| Cell division transporter substrate-binding protein FtsY [Nodularia
           spumigena CCY9414]
          Length = 553

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 184/314 (58%), Gaps = 5/314 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            + V+ E ++W++KL +G   T   +   +  I+    L+    +E+E  L+++D+GV  
Sbjct: 238 PEDVSIEEITWLKKLRQGLGKTRRNILNQLKAIVGQGPLNQAAVDEIETALLQADVGVEA 297

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRP---HVILVVG 118
              I+  L  K  A+    +  +  + +++  ML  PL K  +  F+      ++ L+ G
Sbjct: 298 TDYIISALQKKLLAEVTPPEEAIAYLKQILRDMLDAPLQKAESLSFTPEKETLNIWLITG 357

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNG GKTT IGK+S     +G K ++ A DTFR+AA++Q+K+W +R+  + + +    +D
Sbjct: 358 VNGAGKTTTIGKISHLAQKSGYKCLIGAADTFRAAAVEQVKVWGNRSGVEVIANPGKNTD 417

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A   AQA++ ++L++DTAGRL N   LM  + K+ R++ +  P+A    L VL
Sbjct: 418 PAAVVFDAIAAAQARETELLLVDTAGRLQNKKNLMDELAKIRRIIDKKAPNAKIESLLVL 477

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DAT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G GEG+ D
Sbjct: 478 DATLGQNGLRQAEVFAQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGMED 537

Query: 298 LEPFVAKDFSAVIT 311
           L PF + +F   + 
Sbjct: 538 LRPFSSYEFVEALL 551


>gi|34499288|ref|NP_903503.1| signal recognition particle protein [Chromobacterium violaceum ATCC
           12472]
 gi|34105139|gb|AAQ61495.1| signal recognition particle protein [Chromobacterium violaceum ATCC
           12472]
          Length = 451

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +  + RL +        E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   LDNLTSRLSGVMKTLRGNARLTESNIQDAMREVRMALLEADVALPVVKTFIAQVKERALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  V+E + K++   +   N      P ++L+ G+ G GKTT +GKL
Sbjct: 62  QDVMGSLTPGQALVGVVNEELVKLMGDKNDELNLAAV-PPAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      KV++ + D +R AAI+QLK+ A +   ++  S+       +A  A   A+
Sbjct: 121 AKRLKETQKKKVLVVSADVYRPAAIEQLKLLASQVGVEWFPSDEKQKPVDIARAAIDHAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 RHFFDVLLVDTAGRLAIDEAMMEEIKALHAAIN------PVETLFVVDAMQGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TKMDG +RGG  + +      P+ F+GVGE +  +EPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKMDGDSRGGAALSVRHVTGKPIKFIGVGEKVAAIEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|119470049|ref|ZP_01612854.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Alteromonadales
           bacterium TW-7]
 gi|119446759|gb|EAW28032.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Alteromonadales
           bacterium TW-7]
          Length = 459

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L + + +I    RL +        E+    + +D+ + V +  V+++  +   
Sbjct: 2   FENLQERLGKTLKNISGRGRLTEDNIKDTLREVRMAFLEADVALPVVRDFVKQVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V E + K +   ++  + + +  P V+++ G+ G GKTT +GKL
Sbjct: 62  VEVTKSLTPGQVFVKIVREELEKAMGEANEELSLN-AQPPAVVMMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K + + + D +R AAI QL+  A     DF  S+I      +A  A   A+
Sbjct: 121 AKFLKERKKKSVLVVSADVYRPAAIKQLETLATEVDVDFFPSDISQKPVDIATAAITHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+++DTAGRLH +S +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFIDVVLVDTAGRLHVDSDMMDEIKDLHSAIN------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG ARGG  + I      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFDEALPLTGVILTKTDGDARGGAALSIRHITGKPIKFMGVGERTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|255100269|ref|ZP_05329246.1| signal recognition particle protein [Clostridium difficile
           QCD-63q42]
 gi|255306209|ref|ZP_05350381.1| signal recognition particle protein [Clostridium difficile ATCC
           43255]
          Length = 450

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+   + + S  +L +        E++  L+ +D+   V +  ++++  +   
Sbjct: 3   FEGLSDKLQGAFSKLKSKGKLTEVDVKNAMREVKLALLEADVNFKVVKDFIKKVQERCVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V+E +  ++  +        S  P ++++VG+ G GKTT  GKL
Sbjct: 63  QEVMQSLTPAQHVIKIVNEELTSLMGDVQSKVMIS-SKPPTILMMVGLQGAGKTTTAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
                  G K +L A D +R AAI QL++  ++            +   +A      A  
Sbjct: 122 GGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDIPVFNMGDKENPVNIAKAGLSHAIK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++IIDTAGRLH + +LM  +  +   +K      PH +L V+D+ TGQ+A+   E 
Sbjct: 182 NANDLVIIDTAGRLHIDEVLMDELKSIKSEVK------PHEILLVVDSMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DG  RGG  + I    + P+ F+G+GE ++D+EPF     ++ I 
Sbjct: 236 FNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIKFMGMGEKLDDIEPFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|160892788|ref|ZP_02073578.1| hypothetical protein CLOL250_00319 [Clostridium sp. L2-50]
 gi|156865829|gb|EDO59260.1| hypothetical protein CLOL250_00319 [Clostridium sp. L2-50]
          Length = 448

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 143/305 (46%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+     + S   L +D V+E   E++  L+ +D+   V +  ++ +  +  
Sbjct: 2   AFDSLSDKLQNVFKKLRSKGVLTEDDVKEAMKEVKRALLEADVNFKVVKSFIKAVSDRAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V         V+  V E + K++           S+   VI++ G+ G GKTT   K
Sbjct: 62  GEEVLKGLNPGHMVIKIVKEEMDKLMGSDVTELKLLPSNEITVIMMCGLQGAGKTTTAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +  + G K +L A D +R AAI QL+I  ++                +A  A   A+
Sbjct: 122 LAYQFKNKGKKPLLVACDVYRPAAIKQLQINGEKVGVPVFTMGDNHKPLDIAKAAILHAE 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++++ IDTAGRLH +  +M  + ++   +           +  +DA TGQ+A+    
Sbjct: 182 KNHMNLVFIDTAGRLHVDEDMMDELAEIKENINVTY------TVLTVDAMTGQDAVNVAT 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ + G+GE + DLEPF     ++ I
Sbjct: 236 TFNDKIGIDGVILTKLDGDTRGGAALSIKAVTGKPILYAGMGEKLTDLEPFYPSRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|126698849|ref|YP_001087746.1| signal recognition particle protein [Clostridium difficile 630]
 gi|115250286|emb|CAJ68108.1| Signal recognition particle protein [Clostridium difficile]
          Length = 450

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+   + + S  +L +        E++  L+ +D+   V +  ++++  +   
Sbjct: 3   FEGLSDKLQGAFSKLKSKGKLTEVDVKNAMREVKLALLEADVNFKVVKDFIKKVQERCVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V+E +  ++  +        S  P ++++VG+ G GKTT  GKL
Sbjct: 63  QEVMQSLTPAQHVIKIVNEELTSLMGDVQSKVMIS-SKPPTILMMVGLQGAGKTTTAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
                  G K +L A D +R AAI QL++  ++            +   +A      A  
Sbjct: 122 GGYFKKQGKKPLLVACDIYRPAAIKQLQVVGEKLDIPVFNMGDKENPVNIAKAGLNHAIK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++IIDTAGRLH + +LM  +  +   +K      PH +L V+D+ TGQ+A+   E 
Sbjct: 182 NANDLVIIDTAGRLHIDEVLMDELKSIKSEVK------PHEILLVVDSMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DG  RGG  + I    + P+ F+G+GE ++D+EPF     ++ I 
Sbjct: 236 FNEALGVDGVVLTKLDGDTRGGAALSIRAVTQKPIKFMGMGEKLDDIEPFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|302389629|ref|YP_003825450.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermosediminibacter oceani DSM 16646]
 gi|302200257|gb|ADL07827.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermosediminibacter oceani DSM 16646]
          Length = 446

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + KL+     +    +L +   +    E++  L+ +D+   V +  ++++  +  
Sbjct: 2   AFEALTQKLEAVFKKLRGKGKLSEADVKQAMREVKLALLEADVNYKVVKDFIQKVTERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V++ + K++ P     N   S + +V+++VG+ G GKTT  GK
Sbjct: 62  GQEVLESLTPAQQVIKIVNDELTKLMGPKEARLNISPS-KVNVVMMVGLQGSGKTTTSGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L   +S  G + +L A D +R AAI QL++  ++            +   ++  A + A 
Sbjct: 121 LGLYLSKKGKRPLLVAADIYRPAAIKQLQVVGEKIGLPVFTMGE-QNPVNISKAAVEYAS 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+IIDTAGRLH +  LM  +  +       D   P  +L V+D+ TGQ+A+   E
Sbjct: 180 RHNNDVVIIDTAGRLHVDDELMQELINIK------DAVNPDEILLVVDSMTGQDAVNVAE 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TGLI+TK+DG  RGG  + I      P+ F+G+GE + DLEPF  +  ++ I
Sbjct: 234 TFHNKLQLTGLILTKLDGDTRGGAALSIKAVTGCPIKFVGMGEKLTDLEPFYPERMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|146308421|ref|YP_001188886.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pseudomonas
           mendocina ymp]
 gi|145576622|gb|ABP86154.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pseudomonas
           mendocina ymp]
          Length = 458

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++    +L +        E+   L+ +D+ + V +  V ++  +   
Sbjct: 2   FENLTDRLSQTLRNVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVGKVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   + +++   ++  + + +  P V+L+ G+ G GKTT  GKL
Sbjct: 62  TEVSKSLTPGQAFVKIVRAELEELMGAANEDLSLNAA-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K +L  + D +R AAI QL+  A      F  S+       +A  A ++A+
Sbjct: 121 AKFLKERKKKSVLLVSADVYRPAAIKQLETLAGDLGVTFFPSDASQKPVDIANAAIREAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRL  ++ +MA I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLAVDAEMMAEIQALHAAVK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + +      P+ F+G+GE  + LEPF     ++ I
Sbjct: 235 AFSDALPLTGVVLTKVDGDARGGAALSVRHITGKPIKFIGMGEKSDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|28868679|ref|NP_791298.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213969055|ref|ZP_03397194.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tomato T1]
 gi|301384050|ref|ZP_07232468.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058756|ref|ZP_07250297.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tomato K40]
 gi|302131717|ref|ZP_07257707.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28851918|gb|AAO54993.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213926053|gb|EEB59609.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tomato T1]
          Length = 458

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +    K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDVEMMGEIQALHAATKPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|52842876|ref|YP_096675.1| cell division membrane protein FtsY [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629987|gb|AAU28728.1| cell division membrane protein FtsY [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 368

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 134/310 (43%), Positives = 189/310 (60%), Gaps = 3/310 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           K  S   S   +  KG + T  +L EGI+ ++   + +   + EELE LLI +D+G+   
Sbjct: 54  KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 113

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNG 121
           Q ++++L      K +S    +Y  +   +  +L    KP + +     P VIL+VGVNG
Sbjct: 114 QDVLKQLNEGLARKQLSNGEAVYLTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 173

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL +W +R     +    G+D+A++
Sbjct: 174 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 233

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+K+DVLI DTAGRLH  S LM  + K+ RV+++LDP APH  + VLDA+ 
Sbjct: 234 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 293

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + FH     TG+ MTK+DGTA+GG L  I     IP  +LGVGEGI DL PF
Sbjct: 294 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 353

Query: 302 VAKDFSAVIT 311
            A  F + I 
Sbjct: 354 DAAQFVSAIF 363


>gi|89895345|ref|YP_518832.1| hypothetical protein DSY2599 [Desulfitobacterium hafniense Y51]
 gi|89334793|dbj|BAE84388.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 457

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 154/304 (50%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+E    + S  +L +        E+   L+ +D+   V +  V ++  +   
Sbjct: 6   FQGLSEKLQETFKRLKSKGKLTEADVNEAMREVRMALLEADVNFKVVKDFVAKVKERSIG 65

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V+E +  ++  +S   N   S  P VI++VG+ G GKTT   KL
Sbjct: 66  QEVLESLSPGQQVIKIVNEEMVALMGGVSSKINIS-SKPPTVIMLVGLQGAGKTTHGAKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL++  ++            +   +A  + + A +
Sbjct: 125 ANMLKKQGKHPLLVACDIYRPAAIKQLEVLGEQIKVPVFSLG-QENPVKIAAASLQHANS 183

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DV+IIDTAGRLH N  LM  + ++   +K      PH +L V+DA TGQ+A+   E 
Sbjct: 184 QGLDVVIIDTAGRLHINEELMGELREIKVSVK------PHEILLVVDAMTGQDAVNVAES 237

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G  G+I+TK+DG  RGG  + +      P+ F GVGE ++ +EPF  +  ++ I 
Sbjct: 238 FHNELGVDGIILTKLDGDTRGGAALSVKAVTGCPIKFAGVGEKMDAIEPFFPERMASRIL 297

Query: 312 GCLD 315
           G  D
Sbjct: 298 GMGD 301


>gi|254441406|ref|ZP_05054899.1| signal recognition particle-docking protein FtsY, putative
           [Octadecabacter antarcticus 307]
 gi|198251484|gb|EDY75799.1| signal recognition particle-docking protein FtsY, putative
           [Octadecabacter antarcticus 307]
          Length = 550

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 133/286 (46%), Positives = 193/286 (67%), Gaps = 1/286 (0%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L  G    +  R LDD + E LE+LLI +D+GV  A ++   +   R+ K +S Q +   
Sbjct: 264 LGRGEKKTVVRRELDDDMLERLEELLISADMGVDTALRVTSNMAEGRFGKRLSTQEIKEL 323

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           ++  I +++ P+++P    +  +P V+LVVGVNG GKTT IGKL+ +   AG KV++AAG
Sbjct: 324 LAAEITRVMEPVARPLPL-YPTKPQVVLVVGVNGSGKTTTIGKLASQFQAAGKKVVIAAG 382

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QL++W DR     + +  GSD A+LAY+A +QA     D+L+IDTAGRL N
Sbjct: 383 DTFRAAAVEQLQVWGDRAGVPVLTAPQGSDPASLAYDAMEQAARDGADLLMIDTAGRLQN 442

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + K++RV+++ DP APH+ L VLDATTGQNAL QV+ F  +A  TGLIMTK+D
Sbjct: 443 RADLMEELQKIVRVIRKKDPDAPHNTLLVLDATTGQNALSQVKTFQELADVTGLIMTKLD 502

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           GTA+GG L+ +     +P++ +GVGE I+DL PF  +DF+A +TG 
Sbjct: 503 GTAKGGVLVALADKFGLPIHAIGVGEQIDDLAPFDPEDFAAALTGL 548


>gi|166031990|ref|ZP_02234819.1| hypothetical protein DORFOR_01692 [Dorea formicigenerans ATCC
           27755]
 gi|166028443|gb|EDR47200.1| hypothetical protein DORFOR_01692 [Dorea formicigenerans ATCC
           27755]
          Length = 452

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++ S  RL +       +E++  L+ +D+   V +  ++ +  +  
Sbjct: 2   AFDSLTEKLQNVFKNLRSKGRLTEADVQEALKEIKRALLAADVNFKVVKDFIKTVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +            VI++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEELCNLMGSETTEIKLQPGSAITVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G K +L A D +R AAI QL+I  ++   +          A +A  A + AQ
Sbjct: 122 LAGKFKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFTMGDNHKPANIAKAAIEHAQ 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+   +
Sbjct: 182 KNGNNLVILDTAGRLHIDEDMMAELEEIKNTVT------VHQTILVIDAMTGQDAVNVAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I+TK+DG  RGG  + +      P+ ++G+GE ++DLE F     +  I
Sbjct: 236 EFDEKIGVDGVIVTKLDGDTRGGAALSVKAVTGKPILYVGMGEKLSDLEQFYPDRMANRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|69248474|ref|ZP_00604748.1| Signal recognition particle protein [Enterococcus faecium DO]
 gi|257878620|ref|ZP_05658273.1| signal recognition particle protein [Enterococcus faecium
           1,230,933]
 gi|257883120|ref|ZP_05662773.1| signal recognition particle protein [Enterococcus faecium
           1,231,502]
 gi|257891867|ref|ZP_05671520.1| signal recognition particle protein [Enterococcus faecium
           1,231,410]
 gi|257894437|ref|ZP_05674090.1| signal recognition particle protein [Enterococcus faecium
           1,231,408]
 gi|258616855|ref|ZP_05714625.1| signal recognition particle protein [Enterococcus faecium DO]
 gi|260559333|ref|ZP_05831515.1| signal recognition particle protein [Enterococcus faecium C68]
 gi|261208009|ref|ZP_05922687.1| signal recognition particle protein [Enterococcus faecium TC 6]
 gi|289566895|ref|ZP_06447302.1| signal recognition particle protein [Enterococcus faecium D344SRF]
 gi|293556478|ref|ZP_06675052.1| signal recognition particle protein [Enterococcus faecium E1039]
 gi|293563841|ref|ZP_06678274.1| signal recognition particle protein [Enterococcus faecium E1162]
 gi|293567270|ref|ZP_06678624.1| signal recognition particle protein [Enterococcus faecium E1071]
 gi|294615586|ref|ZP_06695442.1| signal recognition particle protein [Enterococcus faecium E1636]
 gi|294619810|ref|ZP_06699200.1| signal recognition particle protein [Enterococcus faecium E1679]
 gi|314938080|ref|ZP_07845388.1| signal recognition particle protein [Enterococcus faecium
           TX0133a04]
 gi|314943602|ref|ZP_07850359.1| signal recognition particle protein [Enterococcus faecium TX0133C]
 gi|314949239|ref|ZP_07852588.1| signal recognition particle protein [Enterococcus faecium TX0082]
 gi|314952611|ref|ZP_07855603.1| signal recognition particle protein [Enterococcus faecium TX0133A]
 gi|314992459|ref|ZP_07857881.1| signal recognition particle protein [Enterococcus faecium TX0133B]
 gi|314997379|ref|ZP_07862334.1| signal recognition particle protein [Enterococcus faecium
           TX0133a01]
 gi|68194411|gb|EAN08916.1| Signal recognition particle protein [Enterococcus faecium DO]
 gi|257812848|gb|EEV41606.1| signal recognition particle protein [Enterococcus faecium
           1,230,933]
 gi|257818778|gb|EEV46106.1| signal recognition particle protein [Enterococcus faecium
           1,231,502]
 gi|257828227|gb|EEV54853.1| signal recognition particle protein [Enterococcus faecium
           1,231,410]
 gi|257830816|gb|EEV57423.1| signal recognition particle protein [Enterococcus faecium
           1,231,408]
 gi|260074693|gb|EEW63013.1| signal recognition particle protein [Enterococcus faecium C68]
 gi|260077767|gb|EEW65480.1| signal recognition particle protein [Enterococcus faecium TC 6]
 gi|289161301|gb|EFD09194.1| signal recognition particle protein [Enterococcus faecium D344SRF]
 gi|291590019|gb|EFF21813.1| signal recognition particle protein [Enterococcus faecium E1071]
 gi|291591529|gb|EFF23182.1| signal recognition particle protein [Enterococcus faecium E1636]
 gi|291593943|gb|EFF25427.1| signal recognition particle protein [Enterococcus faecium E1679]
 gi|291601357|gb|EFF31635.1| signal recognition particle protein [Enterococcus faecium E1039]
 gi|291604211|gb|EFF33712.1| signal recognition particle protein [Enterococcus faecium E1162]
 gi|313588547|gb|EFR67392.1| signal recognition particle protein [Enterococcus faecium
           TX0133a01]
 gi|313593001|gb|EFR71846.1| signal recognition particle protein [Enterococcus faecium TX0133B]
 gi|313595279|gb|EFR74124.1| signal recognition particle protein [Enterococcus faecium TX0133A]
 gi|313597720|gb|EFR76565.1| signal recognition particle protein [Enterococcus faecium TX0133C]
 gi|313642569|gb|EFS07149.1| signal recognition particle protein [Enterococcus faecium
           TX0133a04]
 gi|313644380|gb|EFS08960.1| signal recognition particle protein [Enterococcus faecium TX0082]
          Length = 472

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ +  I    ++ +  V+E   E+   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTERLQQAMGKIRKKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +   L   +   N      P VI++ G+ G GKTT  GK
Sbjct: 62  GAEVLESLSPAQQIVKIVDEELTITLGSETAELNKS-PKIPTVIMMAGLQGAGKTTFTGK 120

Query: 131 LSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAIDQLK+   +                +  +  + A
Sbjct: 121 LANYLKKNENARPLLIAGDVYRPAAIDQLKVLGQQLDVPVFDMGTEVSPVEIVRQGMELA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D ++IDTAGRLH +  LM  + ++  + +      P+ +L V+DA TGQ+A+   
Sbjct: 181 KEKKNDYVLIDTAGRLHIDETLMDELKQIKELTQ------PNEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F+G GE + DLE F     ++ 
Sbjct: 235 DSFNQQLGITGVVITKLDGDTRGGAALSIRSVTGAPIKFIGSGEKLTDLEVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|300313432|ref|YP_003777524.1| signal recognition particle GTPase involved in cell division
           protein [Herbaspirillum seropedicae SmR1]
 gi|300076217|gb|ADJ65616.1| signal recognition particle GTPase involved in cell division
           protein [Herbaspirillum seropedicae SmR1]
          Length = 321

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 124/303 (40%), Positives = 180/303 (59%), Gaps = 7/303 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SW+ +L  G + TS  L    T +    R+D+ + EELE  L+ SD GV   Q +++E
Sbjct: 24  KRSWLSRLKAGLSKTSSNL----TTLFVGARIDEDLYEELESALLVSDAGVEATQWLLDE 79

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A+ ++    +   +  L+ ++L PL +P       +P V+++ GVNG GKTT I
Sbjct: 80  LKKKVKAERLTEAAQVRTALRTLLIELLQPLQRPLVLG-RDKPLVMMIAGVNGAGKTTTI 138

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  +   G  V+LAAGDTFR+AA +QL +W +R +   +  E   D AA+AY++   
Sbjct: 139 GKLALHLQAHGQSVLLAAGDTFRAAAREQLAVWGERNNVQVIAQE-SGDPAAVAYDSVHS 197

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           AQA+   V+++DTAGRL     LM  + K+ RV+ +    APH VL V+D  TGQNAL Q
Sbjct: 198 AQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIGKAMHSAPHEVLLVIDGNTGQNALAQ 257

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGL++TK+DGTA+GG L  I  T  +P+YF+GVGE I DL+ F A +F  
Sbjct: 258 VKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEQIEDLQAFNATEFVD 317

Query: 309 VIT 311
            + 
Sbjct: 318 ALL 320


>gi|229552450|ref|ZP_04441175.1| signal recognition particle docking protein FtsY [Lactobacillus
           rhamnosus LMS2-1]
 gi|258539821|ref|YP_003174320.1| cell division protein signal recognition particle FtsY
           [Lactobacillus rhamnosus Lc 705]
 gi|229314187|gb|EEN80160.1| signal recognition particle docking protein FtsY [Lactobacillus
           rhamnosus LMS2-1]
 gi|257151497|emb|CAR90469.1| cell division protein, signal recognition particle FtsY
           [Lactobacillus rhamnosus Lc 705]
          Length = 331

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 169/302 (55%), Gaps = 5/302 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +G   +     E +  + ++ R +D+   ++LE++LI SD+G   A ++ +EL  +
Sbjct: 22  NKYDEGLEKSRSSFGEKLNALFANFRTVDEDFFDDLEEMLIESDVGFETAVRLSDELREE 81

Query: 74  RYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIG 129
              K+    + +   + E +  M     K  +         P V L VGVNG GKTT +G
Sbjct: 82  VKLKNAKDPKAVSRVIVEKLVDMYGEAGKGEDNQLHFAEEGPTVFLFVGVNGAGKTTTVG 141

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ ++ + G +V+L A DTFR+ AI QL+ W  R     V +  G D AA+ ++  K+A
Sbjct: 142 KLAHQLKEEGKRVLLVAADTFRAGAIQQLQEWGRRVEVPVVATNPGGDPAAVVFDGVKRA 201

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV+++DTAGRL N   LM  + K+ RV+ R  P AP  VL VLDATTGQNAL Q 
Sbjct: 202 KDEGYDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQNALNQA 261

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG+ +GG ++ I     +PV  +G+GE ++DL+ F    F A 
Sbjct: 262 KEFNQTTQITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDPTKFVAG 321

Query: 310 IT 311
           + 
Sbjct: 322 LF 323


>gi|330964074|gb|EGH64334.1| signal recognition particle protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 458

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A      F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLATDIGVTFFASDISQKPVDIALAAIKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +    K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHIDVEMMGEIQALHAATKPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|26988194|ref|NP_743619.1| signal recognition particle protein [Pseudomonas putida KT2440]
 gi|24982931|gb|AAN67083.1|AE016337_6 signal recognition particle protein Ffh [Pseudomonas putida KT2440]
          Length = 538

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 82  FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKDRAVG 141

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P V+L+ G+ G GKTT  GKL
Sbjct: 142 TEVSRSLTPGQAFVKIVQAELESLMGAANEDLALNAA-PPAVVLMAGLQGAGKTTTAGKL 200

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++  + D +R AAI QL+  A+     F  S+I     A+A  A ++A+
Sbjct: 201 ARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREAK 260

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH ++ +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 261 LKFIDVVIVDTAGRLHIDADMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 314

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 315 AFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASRI 374

Query: 311 TGCLD 315
            G  D
Sbjct: 375 LGMGD 379


>gi|289625897|ref|ZP_06458851.1| signal recognition particle protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646205|ref|ZP_06477548.1| signal recognition particle protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867523|gb|EGH02232.1| signal recognition particle protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 458

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +    K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDVEMMGEIQALHAATKPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|330872812|gb|EGH06961.1| signal recognition particle protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 458

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A      F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLATDIGVTFFASDISQKPVDIALAAIKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +    K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHIDVEMMGEIQALHAATKPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|294677911|ref|YP_003578526.1| cell division protein FtsY [Rhodobacter capsulatus SB 1003]
 gi|294476731|gb|ADE86119.1| cell division protein FtsY [Rhodobacter capsulatus SB 1003]
          Length = 479

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 125/278 (44%), Positives = 191/278 (68%), Gaps = 1/278 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           +  R LDD + E +EDLLI +D+GV  A ++   L   R  + +SV  +   ++  + ++
Sbjct: 200 VPRRVLDDAMLESIEDLLIAADMGVDTALRVTANLAEGRMGRKLSVPELKDILAAEVARI 259

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + P+++P    ++ RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA+
Sbjct: 260 MEPVARPMPL-YARRPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVIIAAGDTFRAAAV 318

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QLK+W DR     + +  G+D A+ AY+A  +A A+ VD+L+IDTAGRL N + LM  +
Sbjct: 319 EQLKVWGDRAGVPVMTAPEGADPASFAYDALTRAAAEGVDLLMIDTAGRLQNRADLMEEL 378

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K++RV++++D  APH+ L VLDATTGQNAL QVE+F  ++  +GL+MTK+DGTA+GG L
Sbjct: 379 AKIVRVIRKIDESAPHNTLLVLDATTGQNALAQVEVFRKISDVSGLVMTKLDGTAKGGVL 438

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           + +     +P++ +GVGE I+DL PF  ++F+A + G 
Sbjct: 439 VALADKFGLPIHAIGVGEQIDDLSPFDPEEFAAALVGI 476


>gi|225018488|ref|ZP_03707680.1| hypothetical protein CLOSTMETH_02435 [Clostridium methylpentosum
           DSM 5476]
 gi|224948689|gb|EEG29898.1| hypothetical protein CLOSTMETH_02435 [Clostridium methylpentosum
           DSM 5476]
          Length = 453

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S KL      + S  +L +   +    E++  L+ +D+   V +  V ++  +  
Sbjct: 2   AFEGLSEKLSAAFKRLKSKGKLTESDVKLAMREVKLALLEADVNYKVVKDFVAKVSERSV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V+E +  ++        +  S  P VI++ G+ G GKTT   K
Sbjct: 62  GSDVLESLTPAQQVIKIVNEELCSLMGSEHTRIEFP-SKPPCVIMMCGLQGSGKTTHSAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K     G + +L A D +R AAI QLK+  ++  A        +D   +A EA K A+
Sbjct: 121 LAKYFKSQGHRPLLVACDVYRPAAIQQLKVVGEKAGASVFEMG-NTDPVEIAKEALKHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGRLH +  LM  +  +   +       P+ +L V+D+ TGQ+A+   +
Sbjct: 180 DYGNDLVILDTAGRLHIDEQLMNELKNIKAEVN------PNEILLVVDSMTGQDAVNVAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+I+TK+DG  RGG  + ++     PV F G+GE ++DLEPF  +  ++ I
Sbjct: 234 SFNETLEIDGVILTKLDGDTRGGAALSVLAVTGKPVKFAGIGEKLDDLEPFHPERMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|294622904|ref|ZP_06701817.1| signal recognition particle protein [Enterococcus faecium U0317]
 gi|291597676|gb|EFF28829.1| signal recognition particle protein [Enterococcus faecium U0317]
          Length = 472

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ +  I    ++ +  V+E   E+   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTERLQQAMGKIRKKGKVSEADVKEMMREIRLALLEADVNLQVVKNFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +   L   +   N      P VI++ G+ G GKTT  GK
Sbjct: 62  GAEVLESLSPAQQIVKIVDEELTITLGSETAELNKS-PKIPTVIMMAGLQGAGKTTFTGK 120

Query: 131 LSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAIDQLK+   +                +  +  + A
Sbjct: 121 LANYLKKNENARPLLIAGDVYRPAAIDQLKVLGQQLDVPVFDMGTEVSPVEIVRQGMELA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D ++IDTAGRLH +  LM  + ++  + +      P+ +L V+DA TGQ+A+   
Sbjct: 181 KEKKNDYVLIDTAGRLHIDETLMDELKQIKELTQ------PNEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F+G GE + DLE F     ++ 
Sbjct: 235 DSFNQQLGITGVVITKLDGDTRGGAALSIRSVTGAPIKFIGSGEKLTDLEVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|322373056|ref|ZP_08047592.1| signal recognition particle protein [Streptococcus sp. C150]
 gi|321278098|gb|EFX55167.1| signal recognition particle protein [Streptococcus sp. C150]
          Length = 520

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    +L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNLRRKGKLSEKEVQEVTKEIRLALLEADVALPVVKTFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++     + Q+++  V+E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDASQQIIKIVNEELTDILGSETSEIEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + M+ A D +R AAIDQLK    + +         + A  +     +QA
Sbjct: 121 LANKLIKEQEARPMMIAADIYRPAAIDQLKTLGQQINVPVFDMGTETPAVEIVKNGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A K D ++IDTAGRL  +  LM  +  +           P+ +L V+D+  GQ A    
Sbjct: 181 RANKNDYVLIDTAGRLQIDETLMQELHDIKNF------AHPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 KEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|283852121|ref|ZP_06369395.1| signal recognition particle protein [Desulfovibrio sp. FW1012B]
 gi|283572511|gb|EFC20497.1| signal recognition particle protein [Desulfovibrio sp. FW1012B]
          Length = 496

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 142/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L +    I    RL +        E+   L+ +D+   V +  VE +  +   
Sbjct: 2   FDSLTDRLDDVFRKIRGHARLTEENVQTALREVRLALLEADVNFKVVKDFVERVRERAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V E + ++L   ++  +   S  P VI+VVG+ G GKTT   KL
Sbjct: 62  QDVLKSLTPGQQVVKIVHEEMIELLGGQAQELDLKAS--PAVIMVVGLQGSGKTTTCAKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + K+      K  L   D +R AAIDQL   A +       S    +   +   A ++A+
Sbjct: 120 ALKLRREFKRKPYLVPADVYRPAAIDQLHKLASQLDIPAFPSTPDQNPVDICLAALEEAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGRLH +  LM  +  +           P  +L V DA TGQ+A+    
Sbjct: 180 RSGHDVVLLDTAGRLHIDQTLMDELAAIKA------GTNPGEILFVADAMTGQDAVTVAA 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+++TKMDG ARGG  + +       + F+G GE + DLE F     ++ I
Sbjct: 234 AFNERLDVSGIVLTKMDGDARGGAALSVRQVTGKAIKFVGTGEKVADLEVFHPDRAASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|296105951|ref|YP_003617651.1| signal recognition particle, subunit SRP54 [Legionella pneumophila
           2300/99 Alcoy]
 gi|295647852|gb|ADG23699.1| signal recognition particle, subunit SRP54 [Legionella pneumophila
           2300/99 Alcoy]
          Length = 458

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L     ++    RL +        E+   LI +D+ + V ++ +E++  K   
Sbjct: 2   FENLTERLTRTFKNLRGQGRLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + +  ++       ++  +  P V L+ G+ G GKTT   KL
Sbjct: 62  QEVLTSLNPDQAFIKIVHDELIHVMGDERVELDYK-TQPPAVFLMAGLQGSGKTTSTAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K+M+A+ D +R AAI QLK+ A++    F  S+       +A +A + A+
Sbjct: 121 ARYLKETENKKIMMASVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VDVLI+DTAGRLH +  +M+ I  + + +       P   L V+D+ TGQ+A    +
Sbjct: 181 KQYVDVLILDTAGRLHVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK DG ARGG  + +      P+ F+G GE I  LEPF  +  ++ I
Sbjct: 235 AFHEALPLTGVILTKTDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|331009220|gb|EGH89276.1| signal recognition particle protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 458

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +    K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDVEMMGEIQALHAATKPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|329297075|ref|ZP_08254411.1| signal recognition particle protein [Plautia stali symbiont]
          Length = 453

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKEAAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV+      Q  +  V   +   +   +   N + +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QDVNRSLTPGQEFIKIVRNELVAAMGAENNALNLN-AQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A +   DF  S+       +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSDPSQKPVDIVNHALKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LQFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ F+G+ E  + LE F     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGMSEKTDALEAFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|148358595|ref|YP_001249802.1| cell division membrane protein FtsY [Legionella pneumophila str.
           Corby]
 gi|148280368|gb|ABQ54456.1| cell division membrane protein FtsY [Legionella pneumophila str.
           Corby]
          Length = 355

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 135/310 (43%), Positives = 189/310 (60%), Gaps = 3/310 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           K  S   S   +  KG + T  +L EGI+ ++   + +   + EELE LLI +D+G+   
Sbjct: 41  KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNG 121
           Q ++++L      K +S    +Y  +      +L P  KP + +     P VIL+VGVNG
Sbjct: 101 QDVLKQLNEGLARKQLSNGEAVYQTLKTNFATILSPEEKPLSIETEDGSPFVILMVGVNG 160

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL +W +R     +    G+D+A++
Sbjct: 161 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+K+DVLI DTAGRLH  S LM  + K+ RV+++LDP APH  + VLDA+ 
Sbjct: 221 IFDALQAAKARKIDVLIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + FH     TG+ MTK+DGTA+GG L  I     IP  +LGVGEGI DL PF
Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340

Query: 302 VAKDFSAVIT 311
            A  F + I 
Sbjct: 341 DAAQFVSAIF 350


>gi|54296436|ref|YP_122805.1| hypothetical protein lpp0467 [Legionella pneumophila str. Paris]
 gi|53750221|emb|CAH11615.1| hypothetical protein lpp0467 [Legionella pneumophila str. Paris]
          Length = 458

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L     ++    RL +        E+   LI +D+ + V ++ +E++  K   
Sbjct: 2   FENLTERLTRTFKNLRGQGRLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + +  ++       ++  +  P V L+ G+ G GKTT   KL
Sbjct: 62  QEVLTSLNPDQAFIKIVHDELIHVMGDERVELDYK-TQPPAVFLMAGLQGSGKTTSTAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM+A+ D +R AAI QLK+ A++    F  S+       +A +A + A+
Sbjct: 121 ARYLKETENKKVMMASVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VDVLI+DTAGRLH +  +M+ I  + + +       P   L V+D+ TGQ+A    +
Sbjct: 181 KQYVDVLILDTAGRLHVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK DG ARGG  + +      P+ F+G GE I  LEPF  +  ++ I
Sbjct: 235 AFHEALPLTGVILTKTDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|254461979|ref|ZP_05075395.1| signal recognition particle-docking protein FtsY [Rhodobacterales
           bacterium HTCC2083]
 gi|206678568|gb|EDZ43055.1| signal recognition particle-docking protein FtsY [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 399

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 124/277 (44%), Positives = 189/277 (68%), Gaps = 1/277 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           ++ R LDD + E+LE+LLI SD+GV  A ++   +   R  + +S + +   ++  I ++
Sbjct: 121 VTRRVLDDDMLEQLEELLISSDMGVDTALRVSANMAEGRMGRKLSTEEIKDLLAAEIARI 180

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + P++KP    +  +P V+LVVGVNG GKTT IGKL+ +   +G  V++AAGDTFR+AA+
Sbjct: 181 MEPVAKPLPI-YPKKPQVVLVVGVNGSGKTTTIGKLASQFKASGKNVVIAAGDTFRAAAV 239

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL++W  R     + +  GSD A+LA++A  QA+    D+L+IDTAGRL N + LM  +
Sbjct: 240 EQLQVWGTRAGVPVLTAPEGSDPASLAFDAMAQAEEDGADLLMIDTAGRLQNRADLMEEL 299

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K++RV+++ DP APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+DGTA+GG L
Sbjct: 300 SKIVRVIQKKDPSAPHNTLLVLDATTGQNALNQVETFQKLADVSGLVMTKLDGTAKGGVL 359

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           + +     +P++ +GVGE I+DL+ F  +DF+  +TG
Sbjct: 360 VALADKFGLPIHAIGVGEQIDDLDAFDPEDFANALTG 396


>gi|330894530|gb|EGH27191.1| signal recognition particle protein [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 458

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAA-GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVWVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +    K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDVEMMGEIQALHAATKPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|307609209|emb|CBW98673.1| hypothetical protein LPW_04821 [Legionella pneumophila 130b]
          Length = 458

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L     ++    RL +        E+   LI +D+ + V ++ +E++  K   
Sbjct: 2   FENLTERLTRTFKNLRGQGRLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + +  ++       ++  +  P V L+ G+ G GKTT   KL
Sbjct: 62  QEVLTSLNPDQAFIKIVHDELIHVMGDERVELDYK-TQPPAVFLMAGLQGSGKTTSTAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM+A+ D +R AAI QLK+ A++    F  S+       +A +A + A+
Sbjct: 121 ARYLKETENKKVMMASVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VDVLI+DTAGRLH +  +M+ I  + + +       P   L V+D+ TGQ+A    +
Sbjct: 181 KQYVDVLILDTAGRLHVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK DG ARGG  + +      P+ F+G GE I  LEPF  +  ++ I
Sbjct: 235 AFHEALPLTGVILTKTDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|295696070|ref|YP_003589308.1| signal recognition particle protein [Bacillus tusciae DSM 2912]
 gi|295411672|gb|ADG06164.1| signal recognition particle protein [Bacillus tusciae DSM 2912]
          Length = 445

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 153/304 (50%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + +L+E    + S  +L     D   +E+   L+ +D+   V +  V  +  +   
Sbjct: 4   FEGLAGRLQEAFARLKSKGKLSEADVDEAMKEVRRALLAADVNFTVVRDFVARVRERAVG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + +  +L    KP   + S RP V+++VG+ G GKTT  GKL
Sbjct: 64  QEVMKSLTPAQQVIKIVHDELTALLGG--KPSTLNLSGRPAVVMLVGLQGAGKTTTAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +   G + +L A D +R AA+ QL+   +         +  +D   ++  + ++A  
Sbjct: 122 AQWVRKQGRRPLLVAADVYRPAAVRQLQTLGEALKVPVFSVDGDADPVEISKSSLERASQ 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV+++DTAGRLH +  LM  + +M   +       P  +L V+DA TGQ+A+   E 
Sbjct: 182 EGCDVVLVDTAGRLHVDDALMEELERMKAAV------VPGEILLVVDAMTGQSAVEVAEA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I TK+DG  +GG  + I+     P+ F GVGE ++ LEPF     ++ I 
Sbjct: 236 FHGRLGLTGAIFTKLDGDTKGGAALSILSVAGCPIKFAGVGEKLDALEPFYPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|268316589|ref|YP_003290308.1| signal recognition particle protein [Rhodothermus marinus DSM 4252]
 gi|262334123|gb|ACY47920.1| signal recognition particle protein [Rhodothermus marinus DSM 4252]
          Length = 450

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 146/308 (47%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+  +  +    R+ +    G   E+   L+ +D+   VA++  E +  K   
Sbjct: 2   FESLTEKLEAALKSVSGQGRITELNIAGTMREIRRALLEADVNYQVAREFTERVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+++  V + + ++L       N   +  P VILV G+ G GKTT   KL
Sbjct: 62  TKVLSSVSPGQQLVKIVYDELVRLLGSEQVDINLSPT-PPTVILVAGLQGSGKTTFCAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG----SDAAALAYEAFK 187
           +      G   +LAA D +R AA++QLK  A   +      E       DA  +A EA +
Sbjct: 121 ALYFKKKGRAPLLAAADVYRPAAVEQLKTLAASINVPVYSIEENGQVVQDAVRVAREAVQ 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+    D++IIDTAGRLH +  +M  + ++   +       PH +L V+D+ TGQ+A+ 
Sbjct: 181 EARRTARDIVIIDTAGRLHIDEAMMQEVEQIKEAV------RPHEILFVVDSMTGQDAVN 234

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+      G+++TK+DG  RGG  + I      P+ F   GE ++ L PF     +
Sbjct: 235 TAKAFNERLDFDGVVLTKLDGDTRGGAALSIRSVVNKPIKFASTGEKLDALTPFYPDRMA 294

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 295 QRILGMGD 302


>gi|319776724|ref|YP_004139212.1| Signal recognition particle protein [Haemophilus influenzae F3047]
 gi|317451315|emb|CBY87553.1| Signal recognition particle protein [Haemophilus influenzae F3047]
          Length = 462

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A EA   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFYPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|330504640|ref|YP_004381509.1| signal recognition particle subunit FFH/SRP54 (SRP54) [Pseudomonas
           mendocina NK-01]
 gi|328918926|gb|AEB59757.1| signal recognition particle subunit FFH/SRP54 (SRP54) [Pseudomonas
           mendocina NK-01]
          Length = 459

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++    +L +        E+   L+ +D+ + V +  V ++  +   
Sbjct: 2   FENLTDRLSQTLRNVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVGKVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   + +++   ++    + +  P V+L+ G+ G GKTT  GKL
Sbjct: 62  TEVSKSLTPGQAFVKIVRAELEELMGAANEDLALNAA-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K +L  + D +R AAI QL+  A      F  S++      +A  A ++A+
Sbjct: 121 AKFLKERKKKSVLLVSADVYRPAAIKQLETLAGDLGVTFFPSDVSQKPVDIANAAIREAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRL  ++ +MA I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLAVDTEMMAEIQALHAAVK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + +      P+ F+G+GE  + LEPF     ++ I
Sbjct: 235 AFSDALPLTGVVLTKVDGDARGGAALSVRHITGKPIKFIGMGEKSDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|251793274|ref|YP_003008002.1| signal recognition particle protein [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534669|gb|ACS97915.1| signal recognition particle protein [Aggregatibacter aphrophilus
           NJ8700]
          Length = 459

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FENLSDRLAKTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVNKSLTPGQEFIKIVQAELEAAMGEANESLNL-ATQPPAVILLAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A   + DF  S++  +   +A  A  +A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQAVNVDFFPSDVKQNPVDIAKTALAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDGEMMNEIKQIHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLSGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|74318391|ref|YP_316131.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057886|gb|AAZ98326.1| Signal recognition particle protein [Thiobacillus denitrificans
           ATCC 25259]
          Length = 447

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + ++    R+ +        ++   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FENLSGRLAGVVKNLRGQARITEANIQDTLRQVRLALLEADVALPVVKSFIDAVKARALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V E + +++   +   N   +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QEVLTSLSPGQALIGIVHEELTRLMGGENADLNL-AATPPAVILMAGLQGSGKTTTSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  + +   KV+LA+ D +R AAIDQL+  A +    F  ++   D   +A  A   A+ 
Sbjct: 121 ALLLKNRKKKVLLASADVYRPAAIDQLRQLAKQLDVSFFDADSERDPLKIARAAQDHARK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+     
Sbjct: 181 QFYDVLIVDTAGRLAIDEAMMNEIKALHAAIT------PVETLFVVDAMQGQDAVNVARA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TK+DG ARGG  + +      P+ F+GVGE  N LEPF  +  +  I 
Sbjct: 235 FNEALPLTGVVLTKLDGDARGGAALSVRQITGKPLKFIGVGEKPNGLEPFHPERMAQRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|328957314|ref|YP_004374700.1| signal recognition particle [Carnobacterium sp. 17-4]
 gi|328673638|gb|AEB29684.1| signal recognition particle [Carnobacterium sp. 17-4]
          Length = 332

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 117/305 (38%), Positives = 176/305 (57%), Gaps = 8/305 (2%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E+     K  KG   T     + + ++ ++ R +D+   +ELE++LI +D+G     +I 
Sbjct: 18  ETTEVTEKYEKGLEKTRKTFSQRMNELFANFRTVDEDFFDELEEVLIGADVGFEATMEIT 77

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPHVILVVGVNGV 122
           + L  +   K+      +  V  +I KM+    K                VILVVGVNGV
Sbjct: 78  DALRQEVKLKNAKASNEVQQV--IIEKMVEIYEKEDTEKPEVHINPDGLTVILVVGVNGV 135

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGK++      G KV+LAAGDTFR+ AI+QL +W +R   + V  + G D AA+ 
Sbjct: 136 GKTTTIGKMAHLYQQEGKKVLLAAGDTFRAGAIEQLHVWGERVGVEVVSGKAGGDPAAVV 195

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K+A+ ++ D+L +DTAGRL N   LM  + KM R+++R  P  PH VL VLDATTG
Sbjct: 196 FDAIKEAKQQQADILFVDTAGRLQNKVNLMNELEKMKRIIEREIPGGPHEVLLVLDATTG 255

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL+ F 
Sbjct: 256 QNAMNQAKQFKQTTNVTGIVLTKLDGTAKGGIVLAIRKELDIPVKFVGLGESMDDLQLFD 315

Query: 303 AKDFS 307
             ++ 
Sbjct: 316 PNEYI 320


>gi|71909330|ref|YP_286917.1| signal recognition particle-docking protein FtsY [Dechloromonas
           aromatica RCB]
 gi|71848951|gb|AAZ48447.1| signal recognition particle-docking protein FtsY [Dechloromonas
           aromatica RCB]
          Length = 361

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 187/312 (59%), Gaps = 5/312 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +  +K A+   SW  +L KG A T  +    +  I S  ++DD + EELE LL+ SD G+
Sbjct: 53  VPAEKAAAP--SWRERLFKGLAKTRAQWGGKLKSIFSRGKVDDELLEELETLLLTSDCGI 110

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              Q +++EL        +     +   + +++ + L PL +P ++  +H+P VI++ GV
Sbjct: 111 EATQHLLDELKKAAKRDKLDTPEAIQKALHDVLLETLQPLEQPLDFS-THKPFVIMIAGV 169

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   +  +   D A
Sbjct: 170 NGAGKTTSIGKLAKYFQTQGKSVLLAAGDTFRAAAREQLETWGERNNVTVIAQD-NGDPA 228

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+A+ +D+++ DTAGRL     LM  I K+ RV+++++P  PH  L VLDA
Sbjct: 229 AVVFDAISAAKARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIQKIEPEGPHETLLVLDA 288

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             GQNAL+QV+ F      TGL++TK+DGTA+GG +  I      P+ F+GVGE I+DL 
Sbjct: 289 NIGQNALQQVKAFDKAIKVTGLVLTKLDGTAKGGVVTAIARQCPKPIRFIGVGEQIDDLR 348

Query: 300 PFVAKDFSAVIT 311
           PF AKDF   + 
Sbjct: 349 PFSAKDFVDALF 360


>gi|226945998|ref|YP_002801071.1| signal recognition particle protein [Azotobacter vinelandii DJ]
 gi|226720925|gb|ACO80096.1| signal recognition particle protein [Azotobacter vinelandii DJ]
          Length = 458

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKEFVNRIKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  TEVSKSLTPGQAFVKIVRVELETLMGAANEDLALNAA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +       V++ + D +R AAI QL+  A+     F  S+       +A  A ++A+
Sbjct: 121 ARFLKERRKKSVLVVSADIYRPAAIKQLETLAEEVGVTFFPSDAAQKPVDIAQAAIREAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+++DTAGRLH ++ +M  I  +    K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVLLDTAGRLHVDADMMEEIKLLHAAAK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + +      P+ F+G+GE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVVLTKVDGDARGGAALSVRYITGKPIKFIGMGEKSDALEPFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|260581975|ref|ZP_05849770.1| signal recognition particle protein [Haemophilus influenzae NT127]
 gi|260094865|gb|EEW78758.1| signal recognition particle protein [Haemophilus influenzae NT127]
          Length = 462

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|55820929|ref|YP_139371.1| signal recognition particle [Streptococcus thermophilus LMG 18311]
 gi|55822851|ref|YP_141292.1| signal recognition particle [Streptococcus thermophilus CNRZ1066]
 gi|116627717|ref|YP_820336.1| signal recognition particle [Streptococcus thermophilus LMD-9]
 gi|55736914|gb|AAV60556.1| signal recognition particle [Streptococcus thermophilus LMG 18311]
 gi|55738836|gb|AAV62477.1| signal recognition particle [Streptococcus thermophilus CNRZ1066]
 gi|116100994|gb|ABJ66140.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Streptococcus thermophilus LMD-9]
          Length = 520

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 148/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    +L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNLRRKGKLSEKEVQEVTKEIRLALLEADVALPVVKTFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++     + Q+++  V+E + ++L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDASQQIIKIVNEELTEILGSETSEIEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + M+ A D +R AAIDQLK    + +         + A  +     +QA
Sbjct: 121 LANKLIKEQEARPMMIAADIYRPAAIDQLKTLGQQINVPVFDMGTETPAVEIVRNGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A K D ++IDTAGRL  +  LM  +  +       D   P+ +L V+D+  GQ A    
Sbjct: 181 RANKNDYVLIDTAGRLQIDETLMKELRDIK------DFAHPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 KEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|145639610|ref|ZP_01795214.1| Signal recognition particle protein [Haemophilus influenzae PittII]
 gi|145271401|gb|EDK11314.1| Signal recognition particle protein [Haemophilus influenzae PittII]
 gi|309750474|gb|ADO80458.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Haemophilus
           influenzae R2866]
          Length = 462

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|326335726|ref|ZP_08201912.1| cell division protein FtsY [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692155|gb|EGD34108.1| cell division protein FtsY [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 317

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 182/313 (58%), Gaps = 15/313 (4%)

Query: 11  LSWIRKL---------TKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGV 60
           +++ +KL          KG   +     + +   I    ++DD + +ELE +L+ SD+GV
Sbjct: 1   MNFFKKLFSSDKKETLDKGLEKSKTSFFDKLARAIAGKSKVDDTILDELEGILVSSDVGV 60

Query: 61  AVAQKIVEELLTKRY-AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVIL 115
               KI++ +  + Y  K +    +   + E I  +L    +    DFS     +P+VI+
Sbjct: 61  DTTLKIIDRIEKRVYQEKYLGTNELNKILREEIAALLSETQRGEEVDFSIPTGKKPYVIM 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNG GKTT IGKL+ ++   GL ++L A DTFR+AAIDQL++WADR     V  + G
Sbjct: 121 VVGVNGAGKTTTIGKLAYQLKKKGLNIVLGAADTFRAAAIDQLQVWADRVGVPLVKQQTG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++AY+    A ++  DV+IIDTAGRLHN   LM  + K+ RV+++L P+ P  VL 
Sbjct: 181 SDPASVAYDTLSSALSQNADVVIIDTAGRLHNKVNLMNELSKVKRVMQKLLPNTPDEVLL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNA  Q + F        L +TK+DGTA+GG +I I    +IPV ++GVGEGI
Sbjct: 241 VLDGSTGQNAFEQAKQFTLATEVNALAITKLDGTAKGGVVIGISDQFQIPVKYIGVGEGI 300

Query: 296 NDLEPFVAKDFSA 308
            DL+ F   +F  
Sbjct: 301 EDLQVFNKYEFVD 313


>gi|309389188|gb|ADO77068.1| signal recognition particle-docking protein FtsY [Halanaerobium
           praevalens DSM 2228]
          Length = 307

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 122/305 (40%), Positives = 188/305 (61%), Gaps = 6/305 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +++KL  G   T     + +T+I + R  +DD + EELE++LI++D+GV     ++++
Sbjct: 1   MGFLQKLKAGLKKTKAGFVDKVTNIFTGRSNIDDQLFEELEEVLIQADVGVKTTFTLIDK 60

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      ++V+    L     + + ++L      FN  F++  ++I++VGVNG GKTT I
Sbjct: 61  LKEDVDNEEVTEPEELMSYFQKELKELLQNDEGDFN--FNNELNIIMMVGVNGAGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+ +    G KVMLAAGDTFR+ AI+QL+IW DR   + +  + GSDAAA+AY+A + 
Sbjct: 119 AKLAGRYKKEGKKVMLAAGDTFRAGAIEQLQIWGDRLGVNVISQQEGSDAAAVAYDAIQS 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP--HAPHSVLQVLDATTGQNAL 246
           A+AK VD+LI+DTAGRLH  + LM  + K+ RV++R      A   VL VLDATTGQNA+
Sbjct: 179 AKAKDVDLLIVDTAGRLHTQTNLMKELKKVKRVIEREAEAIGAGVEVLLVLDATTGQNAI 238

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F+      G+ +TK+DGTA+GG +I +     IP+  +GVGE   DL+ F  + F
Sbjct: 239 SQAKLFNQAVNVDGVALTKLDGTAKGGIVITVKNELDIPIKLIGVGEAAEDLQNFDPEQF 298

Query: 307 SAVIT 311
              + 
Sbjct: 299 IEALF 303


>gi|282878891|ref|ZP_06287655.1| signal recognition particle-docking protein FtsY [Prevotella
           buccalis ATCC 35310]
 gi|281298890|gb|EFA91295.1| signal recognition particle-docking protein FtsY [Prevotella
           buccalis ATCC 35310]
          Length = 319

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 119/301 (39%), Positives = 185/301 (61%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L +G   T   +   ++  ++ + ++DD V + LE++L+ SD+GV    KI+E +  +  
Sbjct: 15  LDQGLEKTKQSVFSKLSRAVAGKSKVDDEVLDNLEEVLVTSDVGVGTTLKIIERIEQRVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   + + I  +L   +      ++    H+P+VILVVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTAELNSILRDEIAALLAENNTEDHENWDLPADHQPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   +G KV L A DT+R+AA+DQ+KIW +R     V  ++G+D A++A++  + A+
Sbjct: 135 LAYQFKASGKKVFLGAADTYRAAAVDQIKIWGERVGVPVVSQQMGADPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  VL VLD +TGQNA  Q +
Sbjct: 195 ANGADVVLIDTAGRLHNKVGLMNELKKIKDVMKKVLPQAPDEVLLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GE ++DL+ F  ++F   +
Sbjct: 255 QFSAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEQMDDLQLFNRREFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|329963573|ref|ZP_08301052.1| signal recognition particle-docking protein FtsY [Bacteroides
           fluxus YIT 12057]
 gi|328528562|gb|EGF55533.1| signal recognition particle-docking protein FtsY [Bacteroides
           fluxus YIT 12057]
          Length = 319

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 182/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV    K
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLK 64

Query: 66  IVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I+E +  +  A+  ++ Q +   + + I  +L   +      F    + +P+VI+VVGVN
Sbjct: 65  IIERIEKRAAAEKYMNAQELNMILRDEIAALLTENNSDDVDDFEAPITKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++GSD A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGSDPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++   AP  VL VLD +
Sbjct: 185 VAFDTLSSAVANHADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVSGAPDEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q   F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQARQFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FRKKEFVDSLFG 316


>gi|298488273|ref|ZP_07006306.1| signal recognition particle [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298157212|gb|EFH98299.1| signal recognition particle [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330985047|gb|EGH83150.1| signal recognition particle protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 458

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +    K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDVEMMGEIQALHAATKPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|163787980|ref|ZP_02182426.1| putative recognition particle-docking protein [Flavobacteriales
           bacterium ALC-1]
 gi|159876300|gb|EDP70358.1| putative recognition particle-docking protein [Flavobacteriales
           bacterium ALC-1]
          Length = 324

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 126/320 (39%), Positives = 185/320 (57%), Gaps = 22/320 (6%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           +S+ +K         L KG   +       +   ++ + ++DD V + LE++L+ SD+GV
Sbjct: 1   MSFFKKIFSSEKKETLDKGLEKSKSSFFNKLNKAVAGKSKVDDDVLDNLEEILVTSDVGV 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSK-----------PFNWDFS 108
               K++E +  +    K +    +   + E I  +L   +            P   D S
Sbjct: 61  NTTLKVIERIEERVAKDKYLGTSELNKILREEIAGLLSETNSGEETDYTIPELPTQEDGS 120

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P+V++VVGVNGVGKTT IGKL+ +    GLKV+L A DTFR+AAIDQL++WADR    
Sbjct: 121 KTPYVLMVVGVNGVGKTTTIGKLAYQFKKQGLKVVLGAADTFRAAAIDQLQVWADRVDVP 180

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +  E+GSD A++A++A +    +  DV+IIDTAGRLHN   LM  + K+ RV++++   
Sbjct: 181 MIRQEMGSDPASVAFDALQSGVNQDADVIIIDTAGRLHNKVNLMNELTKVKRVMQKVVGD 240

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH VL VLD +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV +
Sbjct: 241 APHDVLLVLDGSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKY 300

Query: 289 LGVGEGINDLEPFVAKDFSA 308
           +GVGEGI DL+ F   +F  
Sbjct: 301 IGVGEGIEDLQVFNKYEFVD 320


>gi|255536296|ref|YP_003096667.1| Signal recognition particle receptor protein FtsY (=alpha subunit)
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342492|gb|ACU08605.1| Signal recognition particle receptor protein FtsY (=alpha subunit)
           [Flavobacteriaceae bacterium 3519-10]
          Length = 318

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 125/311 (40%), Positives = 186/311 (59%), Gaps = 13/311 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGV 60
           +SWI+          L KG   +S    E I+  ++   ++D+ V ++LE++LI SD+G 
Sbjct: 1   MSWIKNIFKKEEKETLDKGLEKSSQGFFEKISKAVVGKSKVDEEVLDDLEEVLIASDVGA 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLM--PLSKPFNWDFSHRPHVILVV 117
           A   KI++ +  +    K V    +   + E I  +L+  P +   N D + +P+VI+VV
Sbjct: 61  ATTIKIIQRIEDRVARDKFVGTDELDRILREEISGLLLENPHASTGNIDETKKPYVIMVV 120

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +    G  V+L A DTFR+AA++QL IW++R     V  ++GSD
Sbjct: 121 GVNGVGKTTTIGKLANQFKSEGKSVVLGAADTFRAAAVEQLVIWSERVGVPIVKQQMGSD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A++  +   A   DV+IIDTAGRLHN   LM  + K+ RV++++ P APH +L VL
Sbjct: 181 PASVAFDTVQSGVANNADVVIIDTAGRLHNKVNLMNELTKIKRVMQKVIPDAPHEILLVL 240

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D +TGQNA  Q + F        L +TK+DGTA+GG +I I    +IPV ++GVGE IND
Sbjct: 241 DGSTGQNAFEQAKHFTTATDVNALAITKLDGTAKGGVVIGISDQFQIPVKYIGVGEKIND 300

Query: 298 LEPFVAKDFSA 308
           L+ F   +F  
Sbjct: 301 LQLFNGTEFVD 311


>gi|167648815|ref|YP_001686478.1| signal recognition particle-docking protein FtsY [Caulobacter sp.
           K31]
 gi|167351245|gb|ABZ73980.1| signal recognition particle-docking protein FtsY [Caulobacter sp.
           K31]
          Length = 314

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 134/312 (42%), Positives = 203/312 (65%), Gaps = 1/312 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +   +   W ++LT G A +S ++ E +T + + + LD    ++LE++LI +D+G  +A 
Sbjct: 3   EKPEQKKGWFQRLTSGLARSSQQMTEQVTGVFTKKPLDQEQLDQLEEMLIEADLGPQIAA 62

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +I +     R+ K  +   V   ++EL+   L      F+     +P+V+L +GVNG GK
Sbjct: 63  RIADAFGKARFGKSSTEIEVKEALAELVAAELSDREGTFDPLSGPKPYVVLFIGVNGSGK 122

Query: 125 TTVIGKLSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT +GK++  ++     KV++AAGDTFR+AA++QLK+WADR  ADF+    G+DAAALAY
Sbjct: 123 TTTLGKIASDLTHNKKAKVLIAAGDTFRAAAVEQLKVWADRAGADFMSRPPGADAAALAY 182

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA ++A+ +  DV++IDTAGRL N   LM  + K+IRVLK++DP APH  L VLDAT G+
Sbjct: 183 EAVERAKLEGHDVVLIDTAGRLQNKQGLMDELLKVIRVLKKVDPDAPHETLLVLDATVGR 242

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q ++F    G +G++MTK+DGTARGG L+P+      P+  +GVGEG++DL+PF A
Sbjct: 243 NALAQEKIFGNQVGVSGIVMTKLDGTARGGVLVPVARASDSPIKLIGVGEGVDDLQPFDA 302

Query: 304 KDFSAVITGCLD 315
           + FS  + G  D
Sbjct: 303 RAFSRSLVGLED 314


>gi|312278265|gb|ADQ62922.1| SRP54, signal recognition particle GTPase protein, putative
           [Streptococcus thermophilus ND03]
          Length = 520

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 148/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    +L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNLRRKGKLSEKEVQEVTKEIRLALLEADVALPVVKTFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++     + Q+++  V+E + ++L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDASQQIIKIVNEELTEILGSETSEIEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + M+ A D +R AAIDQLK    + +         + A  +     +QA
Sbjct: 121 LANKLIKEQEARPMMIAADIYRPAAIDQLKTLGQQINVPVFDMGTETPAVEIVRNGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A K D ++IDTAGRL  +  LM  +  +       D   P+ +L V+D+  GQ A    
Sbjct: 181 RANKNDYVLIDTAGRLQIDETLMKELRDIK------DFAHPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 KEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|254509217|ref|ZP_05121314.1| signal recognition particle protein [Vibrio parahaemolyticus 16]
 gi|219547875|gb|EED24903.1| signal recognition particle protein [Vibrio parahaemolyticus 16]
          Length = 462

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  ++ +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFIKRVKEAAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQGELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSADQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRL  +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLVVDTAGRLAIDEQMMGEIKELHSAID------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDTLPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|169630318|ref|YP_001703967.1| Signal recognition particle protein Ffh [Mycobacterium abscessus
           ATCC 19977]
 gi|169242285|emb|CAM63313.1| Signal recognition particle protein Ffh [Mycobacterium abscessus]
          Length = 523

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 148/317 (46%), Gaps = 28/317 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L + +  +    RL D   +     +   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTDALAGLRGKGRLSDADIDATCRTIRLALLEADVALPVVRTFITRIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELIGILGGETRQLAF-AKTPPTVVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS------------DAA 179
           +K +   G   +L A D  R  A++QL++  +R          G+            D  
Sbjct: 121 AKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAPHPGTADGGLEVGSLVGDPV 180

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A +    A+A+  DV+++DTAGRL  ++ LM    ++       D   P  VL VLDA
Sbjct: 181 AVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARI------RDAVDPDEVLFVLDA 234

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             GQ+A+   E F    G TG+++TK+DG ARGG  + +      P+ F   GE + D +
Sbjct: 235 MIGQDAVSTAEAFREGVGFTGVVLTKLDGDARGGAALSVREITGTPILFASTGEKLEDFD 294

Query: 300 PFVAKDFSAVITGCLDY 316
            F     ++ I G  D 
Sbjct: 295 VFHPDRMASRILGMGDL 311


>gi|318042117|ref|ZP_07974073.1| signal recognition particle protein [Synechococcus sp. CB0101]
          Length = 487

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ + ++     +     DG  +E+   L+ +D+ + V +  V+E+  K   
Sbjct: 2   FDELSQRFEDAVKNLRGQGSISESNVDGALKEVRRALLEADVSLPVVKDFVDEVRKKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130
            +V       Q+ +  V E +   +   + P         P V+L+ G+ G GKTT   K
Sbjct: 62  AEVVRGISPDQKFIQVVHEQLVDTMGGENAPLAAGGKPGEPSVVLMAGLQGAGKTTATAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L   + + G K +L   D +R AAIDQLK    +   +       +   A+A    ++A+
Sbjct: 122 LGLHLKEQGRKALLVGADVYRPAAIDQLKTLGGQIGVEVFSLGTDAKPEAIAAAGIEKAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  D +++DTAGRL  +  +M  + ++           P  VL V+D+  GQ A     
Sbjct: 182 AEGFDTVLVDTAGRLQIDESMMEEMVRIREACS------PDEVLLVVDSMIGQEAAELTR 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I
Sbjct: 236 AFHDQVGITGAVLTKLDGDSRGGAALSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|255578951|ref|XP_002530328.1| signal recognition particle protein, putative [Ricinus communis]
 gi|223530132|gb|EEF32044.1| signal recognition particle protein, putative [Ricinus communis]
          Length = 572

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 153/311 (49%), Gaps = 15/311 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KLK    + ++   + + +R+ +   L+ +D+ + V ++ V+ 
Sbjct: 82  KAEMFGQLTTGLESAWSKLKGA--ETLTKENIAEPMRD-MRRALLEADVSLPVVRRFVQS 138

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +     +       Q+++  V + + K++        +   + P VIL+ G+ GVGK
Sbjct: 139 VTDEAIGVGLIRGVKPDQQLVKIVHDELVKLMGGEVSELVF-AKYSPTVILLAGLQGVGK 197

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TTV  KL+  +   G   ML AGD +R AAIDQL I  ++              + +A  
Sbjct: 198 TTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVPVYTEGTEVKPSEIAKR 257

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++A+ K +DV+I+DTAGRL  +  +M  + ++ RVL       P  VL V+DA TGQ 
Sbjct: 258 GLEEAKKKNIDVVIVDTAGRLQIDKGMMDELKEVKRVLN------PTEVLLVVDAMTGQE 311

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF   
Sbjct: 312 AAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPD 371

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 372 RMAGRILGMGD 382


>gi|115373711|ref|ZP_01461005.1| cell division protein FtsY [Stigmatella aurantiaca DW4/3-1]
 gi|310823616|ref|YP_003955974.1| cell division transporter substrate-binding protein FtsY
           [Stigmatella aurantiaca DW4/3-1]
 gi|115369258|gb|EAU68199.1| cell division protein FtsY [Stigmatella aurantiaca DW4/3-1]
 gi|309396688|gb|ADO74147.1| Cell division transporter substrate-binding protein FtsY
           [Stigmatella aurantiaca DW4/3-1]
          Length = 527

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 121/299 (40%), Positives = 176/299 (58%), Gaps = 2/299 (0%)

Query: 15  RKLTKGFAST-SLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           R L +G   T S      +  +   +R++D+ V  ELE++L  +DIGV  A  +V+    
Sbjct: 228 RTLAQGLDKTKSQGFMARLNGLFGQNRQVDESVLAELEEILFTADIGVRTASNLVDLARE 287

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    ++S    +  +       ++ L  P + +    PHV++VVGVNG GKTT IGKL+
Sbjct: 288 KLKRNELSNPERIKALIREEVARIVDLPVPRSLEGGGPPHVVMVVGVNGAGKTTTIGKLA 347

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +++  G KV+LAAGDTFR+AA +QL +WA+R  A+ V  E   D  A+ + A K+AQ  
Sbjct: 348 AQLTGQGKKVVLAAGDTFRAAATEQLDVWAERAQAELVKGEENGDPGAVVFNAVKRAQEI 407

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
              V+I DTAGRLH  + LM  + K+ RVL +    APH VL VLD+T GQNA++Q + F
Sbjct: 408 GAHVVIADTAGRLHTKAPLMEELKKVKRVLGKALEGAPHEVLLVLDSTNGQNAIQQAKQF 467

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           H   G   + +TK+DGTA+GG +I I    K+PV ++GVGE I+DL  F  +DF   + 
Sbjct: 468 HEAVGINAIALTKLDGTAKGGVIIGICDELKLPVVWVGVGEKISDLRRFEPRDFVKALF 526


>gi|86132661|ref|ZP_01051254.1| signal recognition particle-docking protein FtsY [Dokdonia
           donghaensis MED134]
 gi|85816903|gb|EAQ38088.1| signal recognition particle-docking protein FtsY [Dokdonia
           donghaensis MED134]
          Length = 317

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 185/313 (59%), Gaps = 15/313 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           +S+ +K         L KG   T     + ++  ++ + ++DD V + LE++L+ SD+GV
Sbjct: 1   MSFFKKIFSKEKKETLDKGLEKTKTSFFDKMSKAVAGKSKVDDDVLDNLEEVLVTSDVGV 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVIL 115
               K++  +  +    K V    +   + E I  +L   +      F     ++PHVI+
Sbjct: 61  KTTLKVITRIEERVAKDKYVGTDELNRILREEIAGLLSETNTGNATEFEIPSQNKPHVIM 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT IGKL+ +    G KV+L A DTFR+AAIDQL++WADR     V  ++G
Sbjct: 121 VVGVNGVGKTTTIGKLAYQFKKQGKKVVLGAADTFRAAAIDQLQVWADRVDVPIVKQQMG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++A++A +    +  DV+IIDTAGRLHN   LM  + K+ RV++++   APH VL 
Sbjct: 181 SDPASVAFDALESGVKQDADVIIIDTAGRLHNKVNLMNELTKVKRVMQKVVGDAPHDVLL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGI
Sbjct: 241 VLDGSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGI 300

Query: 296 NDLEPFVAKDFSA 308
            DL+ F   +F  
Sbjct: 301 EDLQVFNKVEFVD 313


>gi|296108316|ref|YP_003620017.1| signal recognition particle receptor [Legionella pneumophila
           2300/99 Alcoy]
 gi|295650218|gb|ADG26065.1| signal recognition particle receptor [Legionella pneumophila
           2300/99 Alcoy]
          Length = 355

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 133/310 (42%), Positives = 189/310 (60%), Gaps = 3/310 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           K  S   S   +  KG + T  +L EGI+ ++   + +   + EELE LLI +D+G+   
Sbjct: 41  KEPSPKESIFARFRKGLSKTRHQLGEGISRLLLGKKEISQELLEELETLLISADLGLDTT 100

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNG 121
           Q ++++L      K +S    +Y  +   +  +L    KP + +     P VIL+VGVNG
Sbjct: 101 QDVLKQLNEGLARKQLSNGEAVYQTLKTNLQTILSQEEKPLSIETEDGSPFVILMVGVNG 160

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL +W +R     +    G+D+A++
Sbjct: 161 AGKTTTIGKLAKQFQKQGKKVMLAAGDTFRAAAVEQLHVWGERNGIPVIAQHTGADSASV 220

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+A+K+D+LI DTAGRLH  S LM  + K+ RV+++LDP APH  + VLDA+ 
Sbjct: 221 IFDALQAAKARKIDILIADTAGRLHTQSNLMEELKKVKRVMQKLDPKAPHETMLVLDASI 280

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + FH     TG+ MTK+DGTA+GG L  I     IP  +LGVGEGI DL PF
Sbjct: 281 GQNALAQAKQFHEAVQLTGITMTKLDGTAKGGILFAIANDLGIPFRYLGVGEGIEDLRPF 340

Query: 302 VAKDFSAVIT 311
            A  F + I 
Sbjct: 341 DAAQFVSAIF 350


>gi|16272080|ref|NP_438280.1| Signal recognition particle protein [Haemophilus influenzae Rd
           KW20]
 gi|260580590|ref|ZP_05848417.1| signal recognition particle protein [Haemophilus influenzae RdAW]
 gi|1174434|sp|P44518|SRP54_HAEIN RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|1573059|gb|AAC21784.1| signal recognition particle protein (ffh) [Haemophilus influenzae
           Rd KW20]
 gi|260092652|gb|EEW76588.1| signal recognition particle protein [Haemophilus influenzae RdAW]
          Length = 462

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|332292573|ref|YP_004431182.1| signal recognition particle-docking protein FtsY [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170659|gb|AEE19914.1| signal recognition particle-docking protein FtsY [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 317

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 185/313 (59%), Gaps = 15/313 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           +S+ +K         L KG   T     + ++  ++ + ++DD V + LE++L+ SD+GV
Sbjct: 1   MSFFKKIFSKEKKETLDKGLEKTKTSFFDKMSKAVAGKSKVDDDVLDNLEEVLVTSDVGV 60

Query: 61  AVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVIL 115
               K++  +  +    K V    +   + E I  +L   +      F      +PHVI+
Sbjct: 61  KTTLKVITRIEERVSRDKYVGTDELNQILREEIAGLLSETNVGNATEFEIPKGTKPHVIM 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT IGKL+ +    GLKV+L A DTFR+AAIDQL++WADR     V  ++G
Sbjct: 121 VVGVNGVGKTTTIGKLAYQFKKQGLKVVLGAADTFRAAAIDQLQVWADRVDVPIVKQQMG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++A++A +    +  DV+IIDTAGRLHN   LM  + K+ RV++++   APH VL 
Sbjct: 181 SDPASVAFDALESGVNQNADVIIIDTAGRLHNKVNLMNELTKVKRVMQKVVGDAPHDVLL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGI
Sbjct: 241 VLDGSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGI 300

Query: 296 NDLEPFVAKDFSA 308
            DL+ F   +F  
Sbjct: 301 EDLQVFNKVEFVD 313


>gi|148265784|ref|YP_001232490.1| signal recognition particle protein [Geobacter uraniireducens Rf4]
 gi|146399284|gb|ABQ27917.1| signal recognition particle subunit FFH/SRP54 (srp54) [Geobacter
           uraniireducens Rf4]
          Length = 449

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 136/305 (44%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIIS-----SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F S S KL      +          + D +RE +   L+ +D+   V +  VE +  K  
Sbjct: 2   FESLSDKLDLVFKKLRGHGVMTEENIKDALRE-VRLALLEADVNFKVVKDFVERVREKAV 60

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              V       Q+V+  V + +  ++           +  P  I++VG+ G GKTT  GK
Sbjct: 61  GTQVLQSLSPGQQVVKIVHDELVSLMGGGEDNSLDLAAKPPVAIMMVGLQGAGKTTTCGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ +     K ++   D +R AAI+QLK    + S +   S+       +   A K A+
Sbjct: 121 LARYLKAQRRKPLMVPADVYRPAAIEQLKTLGRQLSIEVYDSQADQKPLDICRNALKYAE 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D +I DTAGR   +  LM  +  +       D   P  +L V DA TGQ A+    
Sbjct: 181 LSGFDTVIFDTAGRHQIDEYLMDELVHI------RDAVDPREILFVADAMTGQEAVNVAA 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++TK+DG A+GG  + I      PV F+G+GE ++ LE F A    + I
Sbjct: 235 GFDERLGITGVVLTKLDGDAKGGAALSIKAVSGKPVKFVGLGEKLDALEVFHADRLVSRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|326793984|ref|YP_004311804.1| signal recognition particle protein [Marinomonas mediterranea
           MMB-1]
 gi|326544748|gb|ADZ89968.1| signal recognition particle protein [Marinomonas mediterranea
           MMB-1]
          Length = 466

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  I    +L +     V  E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDNLSNRLTSSLDKIRGRAKLTEDNIKDVLREVRMALLEADVALPVVKDFIAAVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  L  V + +  ++   +   N   +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVTKSLSPGQVFLKIVKQELEAVMGQANDELNL-RATPPAVILLAGLQGAGKTTSAGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +       V + + D +R AAI QL+  A     DF+ S+I      +A  A   A+
Sbjct: 121 AKFLKERQKKSVAVVSADVYRPAAIKQLETLASDVGVDFIPSDISQKPIDIANNAIDVAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRL  +  +MA I  +   +       P   L V+D+ TGQ+A    +
Sbjct: 181 KAHKDVLIVDTAGRLAIDEDMMAEIKALHGAIN------PVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F  V   TG+I+TK DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDVLPLTGVILTKTDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRLASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|28210935|ref|NP_781879.1| signal recognition particle, subunit ffh/srp54 [Clostridium tetani
           E88]
 gi|28203374|gb|AAO35816.1| signal recognition particle, subunit ffh/srp54 [Clostridium tetani
           E88]
          Length = 451

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 160/305 (52%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL+E    +    +L +  ++E + +    L+ +D+   + +  V+ +  K  
Sbjct: 2   AFDGLASKLQETFKKLRGKGKLSEKDIKEAMREVRLALLEADVNYKIVKDFVKSVSEKCN 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+V+  V++ + +++       N++ +++P VI++VG+ G GKTT+ GK
Sbjct: 62  GKEVLESLTPGQQVVKIVNDELIELMGSKESEINFE-ANKPTVIMLVGLQGAGKTTMAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++     K +L A D +R AAI QL++   +           ++   ++  A K A+
Sbjct: 121 LALQLRKKNKKPLLVACDIYRPAAIKQLQVVGSQIDVPVFTLGDKTNPVDISKAAIKHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++ +IIDTAGRLH +  LM  +  +   ++      P+ VL V+D+ TGQ+A+   E
Sbjct: 181 ENNLNTIIIDTAGRLHIDENLMDELKSIKENIE------PNEVLLVVDSMTGQDAINVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG  RGG  + I      P+ F+G+GE +NDLE F  +  ++ I
Sbjct: 235 SFNEKLNISGVILTKLDGDTRGGAALSIKAMTGKPIKFIGIGEKMNDLEVFYPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|198274635|ref|ZP_03207167.1| hypothetical protein BACPLE_00787 [Bacteroides plebeius DSM 17135]
 gi|198272082|gb|EDY96351.1| hypothetical protein BACPLE_00787 [Bacteroides plebeius DSM 17135]
          Length = 321

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 126/312 (40%), Positives = 186/312 (59%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVN 120
           I++ + T+    K V+ Q +   + E I  +LM  +      F+      P+VI+VVGVN
Sbjct: 65  IIKRIETRVAKDKYVNTQELNNILREEIAALLMENNTVDAADFDVPQDKTPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG KV L A DTFR+AA++QL IW +R     +  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKKVYLGAADTFRAAAVEQLDIWGERVGVPVIKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A+A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +
Sbjct: 185 VAFDTLSSAKANNADVVIIDTAGRLHNKIGLMNELTKIKNVMKKVVPDAPHEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQI 304

Query: 301 FVAKDFSAVITG 312
           F  ++F   + G
Sbjct: 305 FRRREFVDSLFG 316


>gi|254510515|ref|ZP_05122582.1| signal recognition particle-docking protein FtsY [Rhodobacteraceae
           bacterium KLH11]
 gi|221534226|gb|EEE37214.1| signal recognition particle-docking protein FtsY [Rhodobacteraceae
           bacterium KLH11]
          Length = 379

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 128/276 (46%), Positives = 193/276 (69%), Gaps = 1/276 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E+LE+LLI SD+GV  A ++   +   R+ + +S Q +   +++ + +++ 
Sbjct: 103 RRTLDDDMLEQLEELLIASDMGVDTALRVTANMAEGRFGRKLSTQEIKALLAQEVARVMD 162

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P++KP    +  RP V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA++Q
Sbjct: 163 PVAKPMPL-YPKRPQVVLVVGVNGSGKTTTIGKLASQFKAAGKKVVIAAGDTFRAAAVEQ 221

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W DR     + +  GSD A+LA++A  +AQ +  D+L+IDTAGRL N + LM  + K
Sbjct: 222 LQVWGDRAGVPVLTAPEGSDPASLAFDALTKAQNEGTDLLMIDTAGRLQNRADLMEELAK 281

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV++++D  APH+ L VLDATTGQNAL QVE F  +A  +GL+MTK+DGTA+GG L+ 
Sbjct: 282 IVRVIRKVDDTAPHNTLLVLDATTGQNALSQVETFRKLADVSGLVMTKLDGTAKGGVLVA 341

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +     +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 342 LADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 377


>gi|220934024|ref|YP_002512923.1| signal recognition particle protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995334|gb|ACL71936.1| signal recognition particle protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 453

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L+  +  +    R+ +        E+   L+ +D+ + V ++ +  +  +   
Sbjct: 2   FENLTERLQGTVKRLRGQARITEDNIQETLREVRMALLEADVALPVVREFISRVKERALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V++ +  ++   ++    +    P VIL+ G+ G GKTT   KL
Sbjct: 62  QEVLSSLTPGQALIKIVNDELISVMGQANESLQLNV-QPPAVILMAGLQGSGKTTTTAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K + + + D +R AAI QL+  A     +F+ S  G D  A+A  A  QA+
Sbjct: 121 ARLLKERHKKNVAVVSCDVYRPAAIKQLETLAGEIDVEFIPSSGGEDPVAIASRALDQAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +MA I ++   +       P   L V+D+ TGQ+A    +
Sbjct: 181 KKFFDVLIVDTAGRLHVDADMMAEIQRLHTAVS------PVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK DG ARGG  + +      P+ FLG+GE    LEPF  +  ++ I
Sbjct: 235 AFNDALPLTGVVLTKADGDARGGAALSVRQITGKPIKFLGMGEKTGALEPFHPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|323345504|ref|ZP_08085727.1| cell division protein FtsY [Prevotella oralis ATCC 33269]
 gi|323093618|gb|EFZ36196.1| cell division protein FtsY [Prevotella oralis ATCC 33269]
          Length = 317

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 121/301 (40%), Positives = 180/301 (59%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L +G   T   +   +   I     +DD V + LE++LI SD+GV    KI+  +  +  
Sbjct: 15  LDQGLEKTKQSVFSKLGRAIAGKSTVDDDVLDNLEEVLITSDVGVDTTLKIIHRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   + E I  +L       +  ++    H+P+VILVVGVNGVGKTT IGK
Sbjct: 75  KDKYVSTSELNGILREEITSLLAENHTVDNDNWDLPSDHKPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +  +AG KV L A DTFR+AA++Q++IW +R     +  ++GSD A++A++  + A+
Sbjct: 135 LAWQFKNAGKKVFLGAADTFRAAAVEQIQIWGERVGVPVIRQQMGSDPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  V+ VLD +TGQNA  Q +
Sbjct: 195 ANGADVVLIDTAGRLHNKIGLMNELKKIKDVMKKVLPEAPDEVMLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F  + F   +
Sbjct: 255 QFSAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGVEDLQLFNNRQFVNSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|289423976|ref|ZP_06425768.1| signal recognition particle protein [Peptostreptococcus anaerobius
           653-L]
 gi|289155612|gb|EFD04285.1| signal recognition particle protein [Peptostreptococcus anaerobius
           653-L]
          Length = 452

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 153/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+     + S  +L +   +    E++  L+ +D+   V +  ++ +  +   
Sbjct: 3   FEGLSEKLQNAFGKLRSKGKLTEEDVKLAMREVKMALLEADVNFKVVKDFIKVVQERCIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E +  ++  +    ++  S  P VI++VG+ G GKTT  GKL
Sbjct: 63  EDVMKSLTPGQMVVKIVNEELTALMGDVQSKISFS-SKSPTVIMMVGLQGAGKTTTSGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L AGD +R AAI QL++  ++   +            +A  A + A  
Sbjct: 122 AGYLKGQGKNPLLVAGDVYRPAAIKQLQVVGEKLDIEVFTLGDKVSPVDIAKAALEHANK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            K D++IIDTAGRLH + +LM  +  +  V        P  +L V+DA TGQ+A+   E 
Sbjct: 182 NKNDLVIIDTAGRLHVDEVLMQELKDIKSV------ARPQEILLVVDAMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+++TKMDG  RGG  + I    K P+ F+G+GE ++++EPF     ++ I 
Sbjct: 236 FDTALGIDGVVLTKMDGDTRGGAALSIRAVTKKPIKFVGMGEKLDNIEPFYPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|312862888|ref|ZP_07723128.1| signal recognition particle protein [Streptococcus vestibularis
           F0396]
 gi|322516902|ref|ZP_08069799.1| signal recognition particle protein [Streptococcus vestibularis
           ATCC 49124]
 gi|311101748|gb|EFQ59951.1| signal recognition particle protein [Streptococcus vestibularis
           F0396]
 gi|322124525|gb|EFX96007.1| signal recognition particle protein [Streptococcus vestibularis
           ATCC 49124]
          Length = 520

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    +L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNLRRKGKLSEKEVQEVTKEIRLALLEADVALPVVKTFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++     + Q+++  V+E + ++L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDASQQIIKIVNEELTEILGSETSEIEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + M+   D +R AAIDQLK    + +         + A  +     +QA
Sbjct: 121 LANKLIKEQEARPMMIGADIYRPAAIDQLKTLGQQINVPVFDMGTETPAVEIVRNGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A K D ++IDTAGRL  +  LM  +  +           P+ +L V+D+  GQ A    
Sbjct: 181 RANKNDYVLIDTAGRLQIDETLMQELRDIKGF------AHPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 KEFNEQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|261408023|ref|YP_003244264.1| signal recognition particle protein [Paenibacillus sp. Y412MC10]
 gi|261284486|gb|ACX66457.1| signal recognition particle protein [Paenibacillus sp. Y412MC10]
          Length = 460

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 147/306 (48%), Gaps = 16/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+   + +    ++ +        E+   L+ +D+   V +  V ++  K  
Sbjct: 2   AFEGLTSRLQNVFSKLRGKGKVSEEDVTAAMREVRLALLEADVNFKVVKDFVSKVKEKAI 61

Query: 76  AKDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V         ++  V++ + +++           +  P VI++ G+ G GKTT  GK
Sbjct: 62  GKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKS-NKPPTVIMMAGLQGAGKTTTSGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +     K +L AGD +R AAI QL++  ++ +         +    +A +  + A+
Sbjct: 121 LAKLLQKQNSKPLLVAGDIYRPAAIKQLEVLGNQINVPVFSLGDKTSPVEIAKQGLQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D +IIDTAGRLH +  LM  + ++  V+       P  VL V+DA TGQ+A+   E
Sbjct: 181 DNGHDYVIIDTAGRLHVDEELMEELKQIHSVVN------PDEVLLVVDAMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG  RGG  + +      P+ F  +GE I+ LEPF  +  ++ I
Sbjct: 235 SFNQQLTLTGVVLTKLDGDTRGGAALSVKAVTGCPIKFAALGEKIDALEPFHPERMASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|312134783|ref|YP_004002121.1| signal recognition particle protein [Caldicellulosiruptor
           owensensis OL]
 gi|311774834|gb|ADQ04321.1| signal recognition particle protein [Caldicellulosiruptor
           owensensis OL]
          Length = 443

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 153/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S S KL++    +    +L +  ++E +++    L+ +D+   V +  +  +  K   
Sbjct: 2   FSSLSEKLQDVFKKLRGKGKLTEKDIKEAMKEVKLALLEADVNYKVVKDFINNVTQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + +  +L        +  S    + ++VG+ G GKTT  GKL
Sbjct: 62  EEVLESLTPAQQVIKIVYDEMVNLLGGSDAKLTFSPSGF-SIYMMVGLQGSGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL++ A +            DA  +A +  + A++
Sbjct: 121 AGLLKKQGKNPLLVACDIYRPAAIKQLEVVAQKVGVKCYADYTSQDAVKIAKDGIEFAKS 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            + DV+IIDTAGRLH N  LM  +  +   +K      P  +L V+DA TGQ+A+   E 
Sbjct: 181 NRSDVVIIDTAGRLHINQELMDELKNIKNAVK------PTEILLVVDAMTGQDAVNVAEA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+A  G  G+IMTK+DG  RGG  + +      P+ F GVGE + DLEPF     ++ I 
Sbjct: 235 FNAQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVGEKMEDLEPFYPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|54293394|ref|YP_125809.1| hypothetical protein lpl0443 [Legionella pneumophila str. Lens]
 gi|53753226|emb|CAH14673.1| hypothetical protein lpl0443 [Legionella pneumophila str. Lens]
          Length = 458

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L     ++    RL +        E+   LI +D+ + V ++ +E++  K   
Sbjct: 2   FDNLTERLTRTFKNLRGQGRLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + +  ++       ++  +  P V L+ G+ G GKTT   KL
Sbjct: 62  QEVLTSLNPDQAFIKIVHDELIHVMGDERVELDYK-TQPPAVFLMAGLQGSGKTTSTAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM+A+ D +R AAI QLK+ A++    F  S+       +A +A + A+
Sbjct: 121 ARYLKETENKKVMMASVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VDVLI+DTAGRLH +  +M+ I  + + +       P   L V+D+ TGQ+A    +
Sbjct: 181 KQYVDVLILDTAGRLHVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK DG ARGG  + +      P+ F+G GE I  LEPF  +  ++ I
Sbjct: 235 AFHEALPLTGVILTKTDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|86136625|ref|ZP_01055204.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           MED193]
 gi|85827499|gb|EAQ47695.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           MED193]
          Length = 355

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 136/353 (38%), Positives = 205/353 (58%), Gaps = 51/353 (14%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-------------------------------- 38
           +++  KL +    +S KL EG+  I+                                  
Sbjct: 1   MAFFSKLKERLFKSSSKLDEGLEAIVDEGGGTEQAAAVETRVIDAPPSATQTAPASEAAQ 60

Query: 39  ------------------RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
                             R LDD + E+LE+LLI +D+GV  A ++   +   R  K +S
Sbjct: 61  PSGLLGRLVGRGGTAEQRRTLDDDMLEQLEELLIAADMGVDTALRVTANMAEGRLGKKLS 120

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            + +   ++  + +++  ++KP    ++HRP V+LVVGVNG GKTT IGKL+ +   AG 
Sbjct: 121 AREIKELLAAEVARVMEHVAKPMPL-YAHRPQVVLVVGVNGSGKTTTIGKLASQFKAAGK 179

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            V++AAGDTFR+AA++QL++W DR     + +  GSD A+LAY+A  +AQ +  D+L+ID
Sbjct: 180 NVVIAAGDTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAYDAMTRAQEEGADLLMID 239

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL N + LM  + K+IRV+++ D  APH+ L VLDATTGQNAL QVE F  +A  +G
Sbjct: 240 TAGRLQNRADLMEELSKIIRVIRKKDETAPHNTLLVLDATTGQNALSQVETFQKLADVSG 299

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           L+MTK+DGTA+GG L+ +     +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 300 LVMTKLDGTAKGGVLVALADKFALPIHAIGVGEQIDDLAPFDPEEFAAALTGL 352


>gi|297740127|emb|CBI30309.3| unnamed protein product [Vitis vinifera]
          Length = 567

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 92/311 (29%), Positives = 154/311 (49%), Gaps = 15/311 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  +   KLK    ++++   + + +R+ +   L+ +D+ + V ++ V+ 
Sbjct: 77  RAEMFGQLTSGLEAAWTKLKG--EEVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVQA 133

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +     +       Q+++  V + + K++        +  S  P VIL+ G+ GVGK
Sbjct: 134 VSEQAVGVGLIRGVKPDQQLVKIVHDELVKLMGGEVSELVFAKSG-PTVILLAGLQGVGK 192

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TTV  KL+  +   G   ML AGD +R AAIDQL I  ++       +      + +A +
Sbjct: 193 TTVCAKLAFYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVDVPVYTAGTEVKPSQIAKQ 252

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++A+ K +DV+I+DTAGRL  +  +M  +  + R +       P  VL V+DA TGQ 
Sbjct: 253 GLEEARKKNIDVVIVDTAGRLQIDKAMMDELKDVKRAIN------PTEVLLVVDAMTGQE 306

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF   
Sbjct: 307 AAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPD 366

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 367 RMAGRILGMGD 377


>gi|218131134|ref|ZP_03459938.1| hypothetical protein BACEGG_02739 [Bacteroides eggerthii DSM 20697]
 gi|217986654|gb|EEC52988.1| hypothetical protein BACEGG_02739 [Bacteroides eggerthii DSM 20697]
          Length = 319

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 125/312 (40%), Positives = 184/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV    K
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLK 64

Query: 66  IVEELLTKRY-AKDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I+E +  +    K ++ Q +   + + I  +L   +      F    + +P+VI+VVGVN
Sbjct: 65  IIERIEKRAADEKYMNAQELNMILRDEIAALLTENNSDDVDDFETPITKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++GSD A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVVKQKMGSDPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +
Sbjct: 185 VAFDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FRKKEFVDSLFG 316


>gi|282858817|ref|ZP_06267962.1| signal recognition particle-docking protein FtsY [Prevotella bivia
           JCVIHMP010]
 gi|282588386|gb|EFB93546.1| signal recognition particle-docking protein FtsY [Prevotella bivia
           JCVIHMP010]
          Length = 317

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 119/301 (39%), Positives = 180/301 (59%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T   +   +   ++ + + DD V + LE++L+ SD+GV    KI+  +  +  
Sbjct: 15  LDKGLEKTKQNVFSKLARAVAGKSVVDDDVLDNLEEILVTSDVGVDTTIKIIRRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPF----NWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   +   I ++L   +             +P+VILVVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTSELNGILKSEIAELLTENNTESLGNWELPTDKKPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV L A DTFR+AA++Q+ IW +R     V  ++G+D A++A++  + A+
Sbjct: 135 LAYQFKQAGKKVYLGAADTFRAAAVEQISIWGERVGVPVVKQQMGADPASVAFDTLQSAR 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A + DV++IDTAGRLHN   LM  + K+  V+K++ P APH V+ VLD +TGQNA  Q +
Sbjct: 195 ANEADVVLIDTAGRLHNKVNLMNELKKIKEVMKKVMPDAPHEVMLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F  ++F   +
Sbjct: 255 QFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFNKEEFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|329123887|ref|ZP_08252441.1| signal recognition particle protein [Haemophilus aegyptius ATCC
           11116]
 gi|327468494|gb|EGF13975.1| signal recognition particle protein [Haemophilus aegyptius ATCC
           11116]
          Length = 462

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQSELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A EA   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFYPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|303248436|ref|ZP_07334695.1| signal recognition particle protein [Desulfovibrio fructosovorans
           JJ]
 gi|302490147|gb|EFL50066.1| signal recognition particle protein [Desulfovibrio fructosovorans
           JJ]
          Length = 505

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L +    I    RL +        E+   L+ +D+   V +  V+ +  +   
Sbjct: 2   FDSLTDRLDDVFRKIRGHARLTEENVQTALREVRLALLEADVNFKVVKDFVDRVRERAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V + + ++L   ++  +   S  P VI+VVG+ G GKTT   KL
Sbjct: 62  QDVLKSLTPGQQVVKIVHDEMVELLGGEARELDLKAS--PAVIMVVGLQGSGKTTTCAKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + K+      K  L   D +R AAIDQL   A +   +   S    +   +   A ++A+
Sbjct: 120 ALKLRRELKRKPYLVPADVYRPAAIDQLHKLASQLDIEAFPSTTDQNPVDICTAALEEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGRLH +  LM  +  +           P  +L V DA TGQ+A+    
Sbjct: 180 RTGHDVVLLDTAGRLHVDEALMEELSAIKA------KTGPGEILFVADAMTGQDAVTVAS 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+++TKMDG ARGG  + +       + F+G GE ++DLE F     ++ I
Sbjct: 234 SFNDRLGVTGVVLTKMDGDARGGAALSVRQVTGKSIKFVGTGEKVSDLEVFHPDRVASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|52840645|ref|YP_094444.1| signal recognition particle protein Ffh [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52627756|gb|AAU26497.1| signal recognition particle protein Ffh [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 458

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L     ++    RL +        E+   LI +D+ + V ++ +E++  K   
Sbjct: 2   FDNLTERLTRTFKNLRGQGRLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + +  ++       ++  +  P V L+ G+ G GKTT   KL
Sbjct: 62  QEVLTSLNPDQAFIKIVHDELIHVMGNERVELDYK-TQPPAVFLMAGLQGSGKTTSTAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM+A+ D +R AAI QLK+ A++    F  S+       +A +A + A+
Sbjct: 121 ARYLKETENKKVMMASVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VDVLI+DTAGRLH +  +M+ I  + + +       P   L V+D+ TGQ+A    +
Sbjct: 181 KQYVDVLILDTAGRLHVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK DG ARGG  + +      P+ F+G GE I  LEPF  +  ++ I
Sbjct: 235 AFHEALPLTGVILTKTDGDARGGAALSVKQITGKPIKFIGSGEKIEALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|78042676|ref|YP_360266.1| signal recognition particle protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77994791|gb|ABB13690.1| signal recognition particle protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 446

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 147/304 (48%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+E    +    RL +        E+   L+ +D+   V +  + ++  K   
Sbjct: 3   FENLSNKLQEVFKKLKGKGRLTEEDVNLALREVRIALLEADVNFQVVKDFIAKVKEKAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V E +  ++   +   N D    P +I++VG+ G GKTT   KL
Sbjct: 63  HEVLESLTPGQQVIKIVHEELINLMGKTNAKLN-DAGSPPTIIMLVGLQGAGKTTTAAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G K +L A D +R AAI QL++  D                 +A  +   A++
Sbjct: 122 AYLLKKQGKKPLLVAADVYRPAAIKQLQVLGDTIDVPVFTMGE-QSPVDIAKASINFAKS 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              + +IIDTAGRLH N  LM  + K+  V+       PH +L V+DA TGQ+A+   + 
Sbjct: 181 NLKNYVIIDTAGRLHINEELMDELKKIKDVVH------PHEILLVVDAMTGQDAVNVAKS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+I+TK+DG  +GG  + +      P+ F G+GE I +LEPF     ++ I 
Sbjct: 235 FNDELGLTGVILTKLDGDTKGGAALSVKAVTGCPIKFAGMGEKIENLEPFYPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|261855005|ref|YP_003262288.1| signal recognition particle protein [Halothiobacillus neapolitanus
           c2]
 gi|261835474|gb|ACX95241.1| signal recognition particle protein [Halothiobacillus neapolitanus
           c2]
          Length = 451

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +        E+   L+ +D+ + V +  V ++  +   
Sbjct: 2   FENLSQRLGGLFDGLRGQGRLTEDNIKDALREVRMALLEADVALPVVRDFVNQVKERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q  +  VS+ +  ++   +   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  AEVIKSLKPGQVFIKVVSDELTALMGAENSALNL-AAQPPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            + +      KV++ + D +R AAI QL+  A +   DF  S+ G     +   A KQA+
Sbjct: 121 GRLLRTREQKKVLVVSADVYRPAAIKQLETVAKQVGVDFFPSDAGQKPLDIVQSALKQAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH ++ +M  + ++   L       P   L V+DA TGQ+A    +
Sbjct: 181 VGFYDVLIVDTAGRLHVDAEMMDEVRQLHAALN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V   TG+++TK DG ARGG  + +      P+ F+G+GE ++ LEPF     ++ I
Sbjct: 235 AFNEVLPLTGVVLTKADGDARGGAALSVRAITGKPIKFIGMGEKLDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|320329550|gb|EFW85539.1| signal recognition particle protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 458

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +D++I+DTAGRLH +  +M  I  +    K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDMVIVDTAGRLHVDVEMMGEIQALHAATKPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|261250232|ref|ZP_05942808.1| signal recognition particle subunit Ffh SRP54 [Vibrio orientalis
           CIP 102891]
 gi|260939348|gb|EEX95334.1| signal recognition particle subunit Ffh SRP54 [Vibrio orientalis
           CIP 102891]
          Length = 464

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  ++ +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFIKRIKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQSELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK +++    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLTERDKKKVLVVSADVYRPAAIKQLETLATDVGVDFFPSTADQKPLDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +MA I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAVDEQMMAEIQQLHTAIS------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDTLPLTGVILTKVDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|157374297|ref|YP_001472897.1| signal recognition particle protein [Shewanella sediminis HAW-EB3]
 gi|157316671|gb|ABV35769.1| signal recognition particle protein [Shewanella sediminis HAW-EB3]
          Length = 457

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEDNVKDTLREVRMALLEADVALPVVRAFVNGVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +   +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  LEVSKSLSPGQAFIKIVQSELENAMGEANEGLDLS-AQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +   K + + + D +R AAI QL+  A     +F  S++      +   A   A+
Sbjct: 121 SKFLRERDKKSVLVVSADVYRPAAIKQLETLAAEVEVEFFPSDVSQKPIDIVNAAMTHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDEGMMDEIKALHAAVN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|46143422|ref|ZP_00135299.2| COG0541: Signal recognition particle GTPase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 462

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/298 (31%), Positives = 149/298 (50%), Gaps = 17/298 (5%)

Query: 28  LKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-- 81
           L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +    +V+   
Sbjct: 8   LSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERALGTEVNKSL 67

Query: 82  ---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
              Q  L  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL+K + + 
Sbjct: 68  TPGQEFLKIVQSELEIAMGEANEELNL-ATQPPAVILMAGLQGAGKTTSVGKLAKFLKER 126

Query: 139 -GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++ + D +R AAI QL+  A+    DF  +E       +A  A K A+    DVL
Sbjct: 127 HKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETTQKPVEIAELALKYAKLNFFDVL 186

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           I+DTAGRLH +  +M  I ++ RVL       P   L  +DA TGQ+A    + F+    
Sbjct: 187 IVDTAGRLHVDGEMMEEIQQIHRVLN------PIETLFTVDAMTGQDAANTAKAFNEALP 240

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 241 LTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRILGMGD 298


>gi|317476989|ref|ZP_07936231.1| signal recognition particle-docking protein FtsY [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316906782|gb|EFV28494.1| signal recognition particle-docking protein FtsY [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 319

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 183/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV    K
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLK 64

Query: 66  IVEELLTKRY-AKDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I+E +  +    K ++ Q +   + + I  +L   +      F    + +P+VI+VVGVN
Sbjct: 65  IIERIEKRAADEKYMNAQELNMILRDEIAALLTENNSDDVDDFETPITKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +    G  V L A DTFR+AA++QL IW +R     V  ++GSD A+
Sbjct: 125 GVGKTTTIGKLAYQFKKTGKSVYLGAADTFRAAAVEQLVIWGERVGVPVVKQKMGSDPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +
Sbjct: 185 VAFDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FRKKEFVDSLFG 316


>gi|301163426|emb|CBW22977.1| putative recognition particle-docking protein [Bacteroides fragilis
           638R]
          Length = 319

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 183/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I++ +  +    K V+ Q +   + E I  +L   +      F+     +P+VI+VVGVN
Sbjct: 65  IIKRIEKRAAEDKYVNTQELNSILREEIAALLTENNSDDVADFDVPVEKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVDVPVIKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +
Sbjct: 185 VAFDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVIIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FRKKEFVDSLFG 316


>gi|262273655|ref|ZP_06051468.1| signal recognition particle subunit Ffh SRP54 [Grimontia hollisae
           CIP 101886]
 gi|262222070|gb|EEY73382.1| signal recognition particle subunit Ffh SRP54 [Grimontia hollisae
           CIP 101886]
          Length = 454

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  V+++      
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFVKKVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   +   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  LEVSKSLTPGQEFIKIVQSELEAVMGASNAELNL-ATQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A     DF  S        +A  A    +
Sbjct: 121 GKMLKERHKKKVLVVSADVYRPAAIKQLETLAGDVGIDFFPSTPDQKPVEIAKAALDHGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVVIVDTAGRLHIDEEMMDEIKDIHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVVLTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|256847356|ref|ZP_05552802.1| signal recognition particle protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716020|gb|EEU30995.1| signal recognition particle protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 480

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 149/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  +    ++ +  +RE   E+   L+ +D+   V +  V+++ TK  
Sbjct: 2   AFEGLTERLQKAMEKLRRKPKVTEADLRETMREIRLALLEADVNFTVVKDFVKKVRTKAT 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + +++   +   N    H P VI++VG+ G GKTT  GK
Sbjct: 62  GAEVLKGLNPAQQIVKIVNDELTELMGSEAVALN-KAPHIPTVIMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++ +    + +  A D +R AAI QL+  AD             D   +  E    A
Sbjct: 121 LAYRLKNEDHARPLFIAADVYRPAAITQLQQVADSIDVPVFEKGTDVDPVEIVREGLAAA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D +IIDTAGRL  +  LM  +  +  +        P+ +L V+DA TGQNA+   
Sbjct: 181 KANHNDYVIIDTAGRLQIDEQLMDELANIKEL------AQPNEILLVVDAMTGQNAVATA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG  RGG  + I      P+ F+G GE + +L+ F     ++ 
Sbjct: 235 QGFDDKLDVTGVVLTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMENLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|289578456|ref|YP_003477083.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter italicus Ab9]
 gi|297544732|ref|YP_003677034.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528169|gb|ADD02521.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter italicus Ab9]
 gi|296842507|gb|ADH61023.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 319

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 130/312 (41%), Positives = 196/312 (62%), Gaps = 5/312 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGV 60
              + A E   + +K+ +G   T   L   I  I++  R++D+ + EELE++LI +DIG+
Sbjct: 10  KESETAEEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGI 69

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +   KI+E +  K     +     + ++ +E ++++L    KPF       P VIL+VGV
Sbjct: 70  STTSKIIEGIRQKAKEMKIYDASQIKELLAEEVYEILQKDVKPFTL---TSPMVILIVGV 126

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+      G KVMLAAGDTFR+AAIDQL+IWA+R +   +  + GSD A
Sbjct: 127 NGVGKTTTIGKLAYMYKKEGKKVMLAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGSDPA 186

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  + ++A+ +D+LI DTAGRLHN   LM  + K+ RV+ R  P A      VLDA
Sbjct: 187 SVIFDGIQASKARGIDILICDTAGRLHNKKNLMEELRKIRRVIDREYPEARVETFLVLDA 246

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL+Q ++F  V+  TG+++TK+DGTA+GG ++ I     +P+ ++G+GEGI DL+
Sbjct: 247 TTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGMGEGIEDLQ 306

Query: 300 PFVAKDFSAVIT 311
            F AK F + I 
Sbjct: 307 AFDAKSFVSAIF 318


>gi|148827249|ref|YP_001292002.1| Signal recognition particle protein [Haemophilus influenzae PittGG]
 gi|148718491|gb|ABQ99618.1| Signal recognition particle protein [Haemophilus influenzae PittGG]
          Length = 462

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQHELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|329929595|ref|ZP_08283302.1| signal recognition particle protein [Paenibacillus sp. HGF5]
 gi|328936240|gb|EGG32692.1| signal recognition particle protein [Paenibacillus sp. HGF5]
          Length = 460

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 147/306 (48%), Gaps = 16/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+   + +    ++ +        E+   L+ +D+   V +  V ++  K  
Sbjct: 2   AFEGLTSRLQNVFSKLRGKGKVSEEDVTAAMREVRLALLEADVNFKVVKDFVSKVKEKAI 61

Query: 76  AKDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V         ++  V++ + +++           +  P VI++ G+ G GKTT  GK
Sbjct: 62  GKEVMDSFTPGMVIIDIVNKELTELMGGSQAKLAKS-NKPPTVIMMAGLQGAGKTTTSGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +     + +L AGD +R AAI QL++  ++ +         +    +A +  + A+
Sbjct: 121 LAKLLQKQNSRPLLVAGDIYRPAAIKQLEVLGNQINVPVFSLGDKTSPVEIAKQGLQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D +IIDTAGRLH +  LM  + ++  V+       P  VL V+DA TGQ+A+   E
Sbjct: 181 DNGHDYVIIDTAGRLHVDEELMEELKQIHSVVN------PDEVLLVVDAMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG  RGG  + +      P+ F  +GE I+ LEPF  +  ++ I
Sbjct: 235 SFNQQLTLTGVVLTKLDGDTRGGAALSVKAVTGCPIKFAALGEKIDALEPFHPERMASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|309389191|gb|ADO77071.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Halanaerobium praevalens DSM 2228]
          Length = 446

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + KL++    +    +L +       +E++  L+ +D+   V +  ++++  +   
Sbjct: 3   FSSLAEKLQDTFNKLKGKGKLSEKDVKAALKEVKMALLEADVNYKVVKDFIKKIEERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V+E +  ++    +      S  P +I++VG+ G GKTT  GKL
Sbjct: 63  NEVMESLTPGQHVIKIVNEEMQALMGGSKEDIAIS-SEPPTIIMMVGLQGSGKTTSAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K+   G   +L AGD +R AAI QL++  +R           S+   +A  +   A +
Sbjct: 122 ARKLDKDGKNPLLVAGDVYRPAAIRQLQVLGERLDLPVFSMGDDSNPVDIAKGSINYASS 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DTAGRLH +  +M  +  +   +       P  +L V+DA TGQ+A+   + 
Sbjct: 182 HNCDTIILDTAGRLHIDQEMMEELESIKAAVD------PDEILLVVDAMTGQDAVNVAKN 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G+++TKMDG ARGG  + I      P+ F G GE + DLE F     S+ I 
Sbjct: 236 FDQRLDVDGIVLTKMDGDARGGAALSIKAITGKPIKFAGTGEKLADLETFHPDRMSSRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|160889556|ref|ZP_02070559.1| hypothetical protein BACUNI_01980 [Bacteroides uniformis ATCC 8492]
 gi|270296680|ref|ZP_06202879.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           D20]
 gi|317480048|ref|ZP_07939160.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           4_1_36]
 gi|156861073|gb|EDO54504.1| hypothetical protein BACUNI_01980 [Bacteroides uniformis ATCC 8492]
 gi|270272667|gb|EFA18530.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           D20]
 gi|316903790|gb|EFV25632.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           4_1_36]
          Length = 319

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 185/312 (59%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV    K
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLK 64

Query: 66  IVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I+E +  +  A K ++   + + + + I  +L   +      F    + +P+VI+VVGVN
Sbjct: 65  IIERIEKRAAADKYMNATELNHILRDEIAALLTENNSEDVDDFEAPIAKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVVKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +
Sbjct: 185 VAFDTLSSATANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FRKKEFVDSLFG 316


>gi|167037691|ref|YP_001665269.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116106|ref|YP_004186265.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856525|gb|ABY94933.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929197|gb|ADV79882.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 319

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 129/312 (41%), Positives = 196/312 (62%), Gaps = 5/312 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGV 60
              + A E   + +K+ +G   T   L   I  I++  R++D+ + EELE++LI +DIG+
Sbjct: 10  KESETAEEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGI 69

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +   KI+E +  K   + +     + ++ +E ++++L    +PF       P VIL VGV
Sbjct: 70  STTSKIIEGIRQKAKERKIYDASQIKELLAEEVYEILQKDVEPFTL---TSPMVILNVGV 126

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+      G KVMLAAGDTFR+AAIDQL+IWA+R +   +  + GSD A
Sbjct: 127 NGVGKTTTIGKLAYLYKKEGKKVMLAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGSDPA 186

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  + ++A+ +D+LI DTAGRLHN   LM  + K+ RV+ R  P A      VLDA
Sbjct: 187 SVIFDGIQASKARGIDILICDTAGRLHNKKNLMEELRKIRRVIDREYPEARVETFLVLDA 246

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL+Q ++F  V+  TG+++TK+DGTA+GG ++ I     +P+ ++G+GEGI DL+
Sbjct: 247 TTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGIGEGIEDLQ 306

Query: 300 PFVAKDFSAVIT 311
            F AK F + I 
Sbjct: 307 AFDAKSFVSAIF 318


>gi|253578963|ref|ZP_04856234.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849906|gb|EES77865.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 451

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 150/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+     + S  RL +       +E++  L+ +D+   V ++  + +  +  
Sbjct: 2   AFESLTDKLQNVFKKLRSKGRLTEEDVKLALKEVKMALLEADVNFKVVKQFTKSVQEQAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V++ + K++   +        +   V ++ G+ G GKTT + K
Sbjct: 62  GQDVMSGLNPGQMVIKIVNDELVKLMGSETTDLPLRPGNEITVFMMAGLQGAGKTTTVAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+   G K +L A D +R AAI QL++  ++   +            +A  A + A+
Sbjct: 122 LAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQKPVDIAKAAIEHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A + +V++IDTAGRLH +  +M  +  +   ++        + + ++DA TGQ+A+    
Sbjct: 182 ANQQNVVLIDTAGRLHVDEDMMQELADIKANIQ------VDATILIVDAMTGQDAVNVAS 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I+TKMDG  RGG  + I      P+ ++G+GE ++DLE F  +  ++ I
Sbjct: 236 TFADKVGIDGVILTKMDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFYPERMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|163750612|ref|ZP_02157849.1| signal recognition particle protein Ffh [Shewanella benthica KT99]
 gi|161329607|gb|EDQ00598.1| signal recognition particle protein Ffh [Shewanella benthica KT99]
          Length = 457

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEDNVKDTLREVRMALLEADVALPVVRAFVNSVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +   +  +++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  HEVSKSLSPGQAFIKIVQSELENAMGEVNEGLDLS-AQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +       V++ + D +R AAI QL+  A      F  S++      +   A   A+
Sbjct: 121 GKFLREREKKSVLVVSADVYRPAAIKQLETLAIEVDVQFFPSDVSQKPIDIVKAALAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDEGMMDEIKALHAAVN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LE F     ++ I
Sbjct: 235 AFNEALPLTGIILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEAFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|94263346|ref|ZP_01287161.1| Cell division transporter substrate-binding protein FtsY [delta
           proteobacterium MLMS-1]
 gi|93456301|gb|EAT06431.1| Cell division transporter substrate-binding protein FtsY [delta
           proteobacterium MLMS-1]
          Length = 373

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 117/304 (38%), Positives = 183/304 (60%), Gaps = 3/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             +  +L +    T       + ++    + +DD + EELE+LLI SD+G A A ++++ 
Sbjct: 65  KGFFGRLKEQLGRTREGFIHRLDELFLGRKDIDDELFEELEELLITSDLGAATAMELLDR 124

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTV 127
              +    D+S    L   + +L+ + L+   +P         P VI+V+GVNGVGKTT 
Sbjct: 125 ARARIKRDDLSEPAALREILQQLLLEYLVKAERPAELVMPESGPFVIMVLGVNGVGKTTT 184

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ K  +AG +V+L A DTFR+AAI+QL+ WA+R   + V  + G+D +++ Y+AF 
Sbjct: 185 IGKLAWKFKNAGQRVLLVAADTFRAAAIEQLQAWAERVGVEVVAQQQGADPSSVIYDAFD 244

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ +  DV+I+DTAGRLH    LM  + K+ RV+ +  P APH V+ V+DATTGQN + 
Sbjct: 245 YARPRDFDVIIVDTAGRLHTKVNLMEELRKVKRVMSKKIPGAPHEVMLVIDATTGQNGIS 304

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q ++FH     +G+ +TK+DGTARGG ++ I     IP+ F+G+GE + DL  F  ++F 
Sbjct: 305 QAKLFHQAVDVSGIALTKLDGTARGGIVVNISREFNIPIRFIGIGEKMEDLRDFDPREFV 364

Query: 308 AVIT 311
           + I 
Sbjct: 365 SAIF 368


>gi|167469821|ref|ZP_02334525.1| signal recognition particle protein [Yersinia pestis FV-1]
          Length = 302

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELISAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A     DF  S+       +   A +QA+
Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVGIDFFPSDAQEKPIDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|171779410|ref|ZP_02920374.1| hypothetical protein STRINF_01255 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282027|gb|EDT47458.1| hypothetical protein STRINF_01255 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 519

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q+++  V+E + ++L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQIVKIVNEELTEILGSETAELEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + M+ A D +R AAIDQLK    + +           A  +      QA
Sbjct: 121 LANKLIKEENARPMMIAADIYRPAAIDQLKTLGSQINVPVFDMGTDHSAVEIVTNGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +IIDTAGRL  +  LM  +  +  + K      P+ +L V+D+  GQ A    
Sbjct: 181 KENHNDYVIIDTAGRLQIDEALMQELRDVKALAK------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 DEFNKQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|268608884|ref|ZP_06142611.1| Signal recognition particle GTPase, FtsY [Ruminococcus flavefaciens
           FD-1]
          Length = 527

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 126/304 (41%), Positives = 185/304 (60%), Gaps = 3/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +  I+K+  G   T   L  GI  I++S   +DD + ++LE+ +I SDIGV  +++I ++
Sbjct: 1   MGIIKKIADGLRKTKDFLFGGIQRILNSFTEIDDELFDQLEEQMIMSDIGVETSEEICDQ 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  K   + ++  + + ++   +   +M      +   S  P VI+V+GVNG GKTT IG
Sbjct: 61  LRKKIKERGITDPQEIMELIHEVVSEMMGDDTGLDLSVS--PAVIMVIGVNGAGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KLS +    G KV++AA DTFR+AAIDQL++W DR   D V    GSD  A+ Y+A   A
Sbjct: 119 KLSHQFKQEGKKVLVAAADTFRAAAIDQLQVWTDRAGVDIVKHAEGSDPGAVVYDALDAA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA+  DV+IIDTAGRLHN   LM  + K+ R++ +  P +   VL VLDATTGQNA+ Q 
Sbjct: 179 QARGCDVVIIDTAGRLHNKKNLMDELAKINRIIDKKSPESSREVLLVLDATTGQNAVNQA 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F   A  +G+++TK+DGTA+GG +I I     IPV  +G+GE I DL+PF ++DF   
Sbjct: 239 RLFSETAPISGIVLTKLDGTAKGGIVISIKNELGIPVKLIGIGEKIEDLQPFNSRDFVDA 298

Query: 310 ITGC 313
           +   
Sbjct: 299 LFAM 302


>gi|308068626|ref|YP_003870231.1| signal recognition particle protein [Paenibacillus polymyxa E681]
 gi|305857905|gb|ADM69693.1| Signal recognition particle protein [Paenibacillus polymyxa E681]
          Length = 458

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 149/306 (48%), Gaps = 16/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+   + +    ++ +        E+   L+ +D+   V +  + ++  K  
Sbjct: 2   AFEGLSTRLQNVFSKLRGKGKVSEDDVAQAMREVRLALLEADVNFKVVKDFIAKVKEKSV 61

Query: 76  AKDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V         ++  V++ + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GKEVMDSFTPGMVIIDIVNKELTELMGGSQAKL-AKANKPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +     + +L AGD +R AAI QL++  ++ +         +    +A +  + A+
Sbjct: 121 LAKLLQKQNHRPLLVAGDIYRPAAIKQLQVLGEQINTPVFTLGDQTSPVEIAKQGLQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D +IIDTAGRLH +  LM  + ++   +K      P  VL V+D+ TGQ+A+   E
Sbjct: 181 DNGNDYVIIDTAGRLHVDEELMEELRQIHTNVK------PDEVLLVVDSMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F++    TG+++TK+DG  RGG  + +      P+ F  +GE ++ +EPF  +  ++ I
Sbjct: 235 HFNSSLELTGVVLTKLDGDTRGGAALSVKAVTGCPIKFATLGEKLDAMEPFHPERMASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|53713717|ref|YP_099709.1| recognition particle-docking protein FtsY [Bacteroides fragilis
           YCH46]
 gi|60681988|ref|YP_212132.1| putative recognition particle-docking protein [Bacteroides fragilis
           NCTC 9343]
 gi|253565665|ref|ZP_04843120.1| recognition particle-docking protein FtsY [Bacteroides sp. 3_2_5]
 gi|265764041|ref|ZP_06092609.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           2_1_16]
 gi|52216582|dbj|BAD49175.1| recognition particle-docking protein FtsY [Bacteroides fragilis
           YCH46]
 gi|60493422|emb|CAH08208.1| putative recognition particle-docking protein [Bacteroides fragilis
           NCTC 9343]
 gi|251945944|gb|EES86351.1| recognition particle-docking protein FtsY [Bacteroides sp. 3_2_5]
 gi|263256649|gb|EEZ27995.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           2_1_16]
          Length = 319

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 183/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I++ +  +    K V+ Q +   + E I  +L   +      F+     +P+VI+VVGVN
Sbjct: 65  IIKRIEKRAAEDKYVNTQELNSILREEIAALLTENNSDDVADFDVPVEKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVDVPVIKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +
Sbjct: 185 VAFDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FRKKEFVDSLFG 316


>gi|306820620|ref|ZP_07454249.1| signal recognition particle protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551351|gb|EFM39313.1| signal recognition particle protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 443

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 152/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + KL+  + ++     L +       ++++  L+ +D+   V +  V ++  +   
Sbjct: 3   FEGLAEKLQSTMQNLRGKGTLSEKDVDLAMKQVKLALLEADVNYKVVKDFVAKVKERSVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V++ + +++  +    N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 63  EEVMKSLTPGQQVIKIVNDELKELMGSVQSKINIS-SKPPTVILMSGLQGAGKTTTTGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   ML A D +R AAI QL+I +D+  A F   E   +   +A  A + A+ 
Sbjct: 122 AYHLKSQGKNPMLVACDVYRPAAITQLQILSDKVGAKFYSEEGNKNPVTIAQNAVESAKT 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRLH +  LM  +  +   +       P  +L V+DA TGQ+ +  V+ 
Sbjct: 182 LGFDVVIIDTAGRLHIDEELMQELKNIKSTV------RPSEILLVVDAMTGQDTVNIVKS 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+I++K+DG  RGG  + I      P+ F  +GE INDLEPF     ++ I 
Sbjct: 236 FDEALGIDGVILSKLDGDTRGGAALSIRAVTNKPIKFAAIGEKINDLEPFYPDRIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|212703525|ref|ZP_03311653.1| hypothetical protein DESPIG_01570 [Desulfovibrio piger ATCC 29098]
 gi|212673025|gb|EEB33508.1| hypothetical protein DESPIG_01570 [Desulfovibrio piger ATCC 29098]
          Length = 502

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L           +L +        E+   L+ +D+   V +  VE +  K   
Sbjct: 2   FESLSDRLSGVFRSFSGRGQLTEENIQAGLREVRLALLEADVNFKVVKDFVENVRQKCLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++       Q+V+  V E +  +L   +   N      P VI++VG+ G GKTT  GK+
Sbjct: 62  QELIKGVSPAQQVVKIVHEELVGLLGGETAGLNLQ-GQEPAVIMLVGLQGSGKTTSAGKI 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +    ++  L   D +R AAIDQL + A +       S +  +   +A +A + A+ 
Sbjct: 121 ANLLRKQKMRPYLVPADVYRPAAIDQLTVLAKQLDMPCFPSTVDMNPVDIARQAMEAARE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++  V+++DTAGRLH +  LM  +  +   +       P  +L V DA TGQ+A+   E 
Sbjct: 181 QQATVVLLDTAGRLHVDEPLMQELAAIKAAVN------PQEILFVADAMTGQDAVTVAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+++TKMDG ARGG  + I      PV F+G+GE ++++E F     +  I 
Sbjct: 235 FNERLGLTGVVLTKMDGDARGGAALSIRAVTGAPVKFVGMGEKLSEMEIFHPDRIAGRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|56476189|ref|YP_157778.1| cell division protein FtsY [Aromatoleum aromaticum EbN1]
 gi|56312232|emb|CAI06877.1| Cell division protein FtsY [Aromatoleum aromaticum EbN1]
          Length = 386

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 184/303 (60%), Gaps = 3/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SW  +L  G + T  +L  G+  +   R++D+ + EELE  L+ +D GV   Q ++ E
Sbjct: 77  KRSWSERLKAGLSRTRQQLGGGLASLFGRRKIDEELLEELEATLLMADCGVEATQHLLGE 136

Query: 70  LLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +     +     L   +++ +H +L+PL +P +    H P++I++ GVNG GKTT I
Sbjct: 137 LRKRWKRDRLETADQLQKALADELHAILLPLEEPLDVS-GHSPYIIMIAGVNGSGKTTSI 195

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K     G  V+LAAGDTFR+AA +QL  W +R +   +  + G  A A+ ++A   
Sbjct: 196 GKLAKYFQAQGRSVLLAAGDTFRAAAREQLMTWGERNNVTVIAQDGGDSA-AVIFDAINA 254

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+++DV++ DTAGRL     LM  I K+ RV+ +  P  PH VL VLDA  GQNAL Q
Sbjct: 255 AKARRIDVVLADTAGRLPTQLHLMDEIAKVKRVIAKASPSGPHEVLLVLDANIGQNALAQ 314

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F +  G TGL++TK+DGTA+GG +  I   +  P+ F+GVGEGI+DL+PF A++F  
Sbjct: 315 VKAFDSAIGVTGLVVTKLDGTAKGGVVAAIARQYPRPLRFIGVGEGIDDLQPFKAREFVD 374

Query: 309 VIT 311
            + 
Sbjct: 375 ALF 377


>gi|261879551|ref|ZP_06005978.1| signal recognition particle-docking protein FtsY [Prevotella
           bergensis DSM 17361]
 gi|270333777|gb|EFA44563.1| signal recognition particle-docking protein FtsY [Prevotella
           bergensis DSM 17361]
          Length = 315

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 122/301 (40%), Positives = 178/301 (59%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L +G   T   +   +   ++ +  +D+ V + LE++LI SD+GV    KI+E +  +  
Sbjct: 15  LDQGLEKTKQSVFGKLARAVAGKSEVDEDVLDNLEEVLITSDVGVDTTLKIIERIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFN----WDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   + + I  +L   +   N        H P+VILVVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTSELNGILKDEIASLLTENNSDDNDNWELPADHSPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV L A DTFR+AA++Q+ IW DR     V  ++G+D A++A++  + A+
Sbjct: 135 LAYQFKAAGKKVYLGAADTFRAAAVEQISIWGDRVGVPVVKQQMGADPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  VL VLD +TGQNA  Q  
Sbjct: 195 ANGADVVLIDTAGRLHNKVGLMNELKKIKDVMKKVVPSAPDEVLLVLDGSTGQNAFEQAR 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GE + DL+ F  K+F   +
Sbjct: 255 QFSAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEKMEDLQLFNRKEFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|289806535|ref|ZP_06537164.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 447

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/297 (30%), Positives = 149/297 (50%), Gaps = 17/297 (5%)

Query: 29  KEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV--- 81
              + +I    RL +        E+   L+ +D+ + V ++ +  +  K    +V+    
Sbjct: 4   SRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLT 63

Query: 82  --QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA- 138
             Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL K + +  
Sbjct: 64  PGQEFVKIVRSELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKH 122

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+ K  DVL+
Sbjct: 123 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLL 182

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    + F+     
Sbjct: 183 VDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAKAFNEALPL 236

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 237 TGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGD 293


>gi|167765551|ref|ZP_02437615.1| hypothetical protein CLOSS21_00045 [Clostridium sp. SS2/1]
 gi|167712736|gb|EDS23315.1| hypothetical protein CLOSS21_00045 [Clostridium sp. SS2/1]
          Length = 318

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 121/323 (37%), Positives = 185/323 (57%), Gaps = 8/323 (2%)

Query: 1   MSNQKVA-SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDI 58
           M+ +++A SE   + ++L +G + T   +      I S    +D+   EELE++LI SD+
Sbjct: 1   MNKRRMAMSEKKGFFKRLAQGLSKTRDNIASSFDSIFSGFSGIDEDFYEELEEILIMSDM 60

Query: 59  GVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           G+     I+E+L  K     +   +     + + I   +    +   +DF  +  V+LV+
Sbjct: 61  GIDTTMNIIEDLKKKVKENKIKEPEECRQLLIDSIKDQMR--LEDSAYDFIDKKSVVLVI 118

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT +GKL+  +   G KV+LAA DTFR+ AI+QLK W++R   D +    G+D
Sbjct: 119 GVNGVGKTTSVGKLAASLKGQGKKVLLAAADTFRAGAIEQLKEWSNRAGVDIISQAEGAD 178

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A   A+A+ VDVL+ DTAGRLHN   LM  + K+ R++++    A    L VL
Sbjct: 179 PAAVVYDAVAAAKARDVDVLLCDTAGRLHNKKNLMNELSKINRIIQKEYSEAYLETLIVL 238

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D TTGQNA+ Q + F      +G+I+TK+DGTA+GG  I I     IPV ++G+GE ++D
Sbjct: 239 DGTTGQNAMAQAKQFKEATDISGIILTKLDGTAKGGIAIAIQSELGIPVKYIGIGEQVDD 298

Query: 298 LEPFVAKDFSAVITGCLDYGEEK 320
           L+ F    F   +    + GEE 
Sbjct: 299 LQRFDPDMFVNAL---FEKGEEN 318


>gi|220928159|ref|YP_002505068.1| signal recognition particle protein [Clostridium cellulolyticum
           H10]
 gi|219998487|gb|ACL75088.1| signal recognition particle protein [Clostridium cellulolyticum
           H10]
          Length = 448

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 153/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL++ I  I    R+ +     +  E++  L+ +D+   V ++ + ++  +   
Sbjct: 4   FEGLSGKLQDTIKKIRGQGRVSEKDVKDMMREIKLALLEADVNFKVVKEFISKISERAVG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+V+  V E + ++L        +     P V ++ G+ G GKTT  GKL
Sbjct: 64  ADVLESLTPGQQVVKIVHEELIELLGREQSKVTF-APKPPTVFMMAGLQGAGKTTTAGKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL++  ++ +      E   +   +A EA K A+ 
Sbjct: 123 ANLLRKQGKNPLLVACDVYRPAAIKQLQVLGNQLNIPVFTLENNQNPVQIAKEAVKFAEM 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K+ D++I+DTAGRLH +  LM  +  +   +K      PH +L V+D+ TGQ+A+   + 
Sbjct: 183 KQNDLVILDTAGRLHIDEKLMDELLNIKNTVK------PHEILLVVDSMTGQDAVNVSKT 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DG  RGG  + +      P+ F  +GE +ND+EPF     ++ I 
Sbjct: 237 FNEKLGIDGVVLTKLDGDTRGGAALSVKSVTGKPIKFAAMGEKLNDIEPFFPDRMASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|37522208|ref|NP_925585.1| signal recognition particle protein SRP54 [Gloeobacter violaceus
           PCC 7421]
 gi|35213208|dbj|BAC90580.1| signal recognition particle protein SRP54 [Gloeobacter violaceus
           PCC 7421]
          Length = 497

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 151/309 (48%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L++       KL+    D I+   +D+ +RE +   L+ +D+   VA++ V ++  
Sbjct: 1   MFESLSEKLEGAWRKLRGQ--DRITEGNIDEALRE-VRRALLEADVNFQVAKEFVADVRD 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTT 126
                +V       Q+ +  V + +  ++   + P     +  RP V+L+ G+ G GKTT
Sbjct: 58  DALGAEVVSGVTPDQQFIKIVHDQLVALMGEQNVPLAEPRAKGRPAVVLMAGLQGTGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+  +   G K +LAA D +R AAIDQL+    +           +D   +A  + 
Sbjct: 118 ASAKLALYLQKNGQKPLLAAADVYRPAAIDQLQTLGGQIQVPVFTLGKEADPVDIARASL 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A A + DVLI+DTAGRL  +  +MA + ++   +       P  +L V+DA TGQ A 
Sbjct: 178 ERAIADRHDVLIVDTAGRLSIDDAMMAELERIKAAID------PEEILLVVDAMTGQEAA 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                FH   G TG I+TK+DG  RGG  + +      P+ F+GVGE +  L+PF  +  
Sbjct: 232 NLTRAFHDRLGITGAILTKLDGDTRGGAALSVRKISGQPIKFVGVGEKVEALQPFYPERM 291

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 292 ASRILGMGD 300


>gi|225571995|ref|ZP_03780859.1| hypothetical protein RUMHYD_00289 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040528|gb|EEG50774.1| hypothetical protein RUMHYD_00289 [Blautia hydrogenotrophica DSM
           10507]
          Length = 449

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 148/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++ S  RL +        E++  L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFESLTEKLQNVFKNLRSKGRLTEADVKTALREVKMALLEADVNFKVVKQFIKSVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +            + ++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEEMVNLMGSETTEIPSKQGKEITIWMMAGLQGAGKTTTAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ KM   G K +L A D +R AAI QL++  ++   +       +    +A  A + A+
Sbjct: 122 LAGKMKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKNHPVDIAKAAVEHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             + +++IIDTAGRLH +  +M  + ++   +         + + V+DA TGQ+A+    
Sbjct: 182 NNQQNLVIIDTAGRLHIDEDMMRELEEIKAQVD------VDATILVVDAMTGQDAVNVAS 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I+TKMDG  RGG  + I      P+YF+G+GE ++DLE F     ++ I
Sbjct: 236 AFAEKVGIDGVILTKMDGDTRGGAALSIKAVSGKPIYFVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|256847358|ref|ZP_05552804.1| signal recognition particle-docking protein FtsY [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256716022|gb|EEU30997.1| signal recognition particle-docking protein FtsY [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 444

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 119/299 (39%), Positives = 172/299 (57%), Gaps = 7/299 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K   G   +       +   +++ R +D+   E+LEDL+I SD+G  +A K+ + L  +
Sbjct: 135 EKYDVGLEKSRNGFGARLNKFLANFRHVDEDFFEDLEDLMIESDVGYDMAMKLSDSLREE 194

Query: 74  RYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              ++   ++ + +V      EL            N+  S  P VI+ VGVNG GKTT I
Sbjct: 195 VKLQNAKSKQDVSNVIIQKMVELYDDAGQDEQTGINFAQSG-PTVIMFVGVNGAGKTTTI 253

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++ +  + G KV+LAA DTFR+ A +QL +WA R   D V      D AA+ ++  K+
Sbjct: 254 GKMAARFKNEGKKVLLAAADTFRAGATEQLDVWAKRDGVDIVTGPENGDPAAVVFDGVKK 313

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+  DVL +DTAGRL N   LM  + KM R+L R  P APH VL VLDATTGQNAL Q
Sbjct: 314 AKAEGYDVLFVDTAGRLQNKVNLMNELAKMKRILTREIPDAPHEVLLVLDATTGQNALSQ 373

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            ++F      TG+++TK+DGTARGG ++ I     +PV F+G+GE + DL+ F A +F 
Sbjct: 374 AKLFKESTDVTGIVLTKLDGTARGGIVLAIRNELHLPVKFVGLGEKVTDLQEFDASEFV 432


>gi|110833658|ref|YP_692517.1| signal recognition particle protein Ffh [Alcanivorax borkumensis
           SK2]
 gi|110646769|emb|CAL16245.1| signal recognition particle protein Ffh [Alcanivorax borkumensis
           SK2]
          Length = 473

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  +     L +        E+   L+ +D+ + V ++ VE++  K   
Sbjct: 2   FENLTDRLGSSLKSLAGQGSLTEDNIRDTLREVRKALLEADVALPVVKEFVEQVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V++ +   +   +   +   +  P +IL+ G+ G GKTT + KL
Sbjct: 62  QEVLQSLNPGQAFVKIVNDELVHTMGDANDGLDL-ATKPPAIILMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM+ + D +R AAI+QLK  A      F  S    D   +A  A  +A+
Sbjct: 121 ARFLQEREKKKVMVVSADIYRPAAIEQLKTLAGEVETHFFPSSSDQDPVDIANAALDEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVLI+DTAGRLH +  +M+ I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 RRYMDVLIVDTAGRLHVDEDMMSEIKRLHGAIS------PVETLFVVDAMTGQDAANTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG +RGG  + +      P+ F+G+GE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKADGDSRGGAALSVRQLTGKPIKFIGMGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|212693205|ref|ZP_03301333.1| hypothetical protein BACDOR_02715 [Bacteroides dorei DSM 17855]
 gi|237709947|ref|ZP_04540428.1| recognition particle-docking protein FtsY [Bacteroides sp.
           9_1_42FAA]
 gi|237725387|ref|ZP_04555868.1| recognition particle-docking protein FtsY [Bacteroides sp. D4]
 gi|265753599|ref|ZP_06088954.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           3_1_33FAA]
 gi|212664310|gb|EEB24882.1| hypothetical protein BACDOR_02715 [Bacteroides dorei DSM 17855]
 gi|229436074|gb|EEO46151.1| recognition particle-docking protein FtsY [Bacteroides dorei
           5_1_36/D4]
 gi|229456040|gb|EEO61761.1| recognition particle-docking protein FtsY [Bacteroides sp.
           9_1_42FAA]
 gi|263235313|gb|EEZ20837.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           3_1_33FAA]
          Length = 319

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 181/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           ++  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   NFFSKEKKETLDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVN 120
           I++ +  +    K V+ Q +   + E I  +L       S  F      +P+VI+VVGVN
Sbjct: 65  IIKRIEERVAKDKYVNTQELNKILREEIAALLTENNTVDSDDFTVPEGKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++GSD A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLDIWGERVGVPVIKQKMGSDPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++   APH VL VLD +
Sbjct: 185 VAFDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVADAPHEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEGI D++ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISEQFKIPVKYIGLGEGIEDMQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FRKKEFVDSLFG 316


>gi|116618655|ref|YP_819026.1| signal recognition particle subunit FFH/SRP54 (srp54) [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097502|gb|ABJ62653.1| signal recognition particle subunit FFH/SRP54 (srp54) [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 491

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L + I ++    R+ +        E+   L+ +D+     +K V  +  K  
Sbjct: 2   AFENLTERLSKAIKNLTGHGRVSEEDLRATMREIRLALLEADVNYDTVKKFVANVREKAS 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             D+       Q+++  V++ +   +   + P N      P +I++ G+ G GKTT + K
Sbjct: 62  GTDIMEGLNPAQQIVKIVNDELTATMGEEAVPLNKS-PKIPTIIMMAGLQGAGKTTTVAK 120

Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+ +    + +L A D +R AAIDQL+I                +   +     ++A
Sbjct: 121 LAYKLKNENNARPLLIAADIYRPAAIDQLEILGRDLDIPVFSMGTDVNPRDIVRAGLEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D + IDTAGRL  +  LM  +  +  +        P  +L  +DA TGQNA    
Sbjct: 181 AENKNDYVFIDTAGRLQIDEELMQELKDIAEI------ADPDEILLTVDAMTGQNAAETA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F A    TG+++TK+DG  RGG  + I      P+ F+G GE   DL+ F     ++ 
Sbjct: 235 KGFSASLDLTGVVLTKLDGDTRGGAALSIRDVTGKPIKFVGQGEKPTDLDVFYPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|257870294|ref|ZP_05649947.1| signal recognition particle protein [Enterococcus gallinarum EG2]
 gi|257804458|gb|EEV33280.1| signal recognition particle protein [Enterococcus gallinarum EG2]
          Length = 472

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 149/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ +    ++ +  V+E   E+   L+ +D+ + V ++  + +  +  
Sbjct: 2   AFESLTERLQQAMSKLRKKGKVSEADVKEMMREIRLALLEADVNLQVVKEFTKNVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E + K L   +          P VI++ G+ G GKTT  GK
Sbjct: 62  GAEVLDSLSPAQQIVKIVDEELTKTLGSETVGIEKS-PKIPTVIMMAGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      + ++ AGD +R AAIDQLK+   +                +  +    A
Sbjct: 121 LANHLIKTENARPLMIAGDVYRPAAIDQLKVLGQQLDVPVFDMGTDVSPVEIVRQGMALA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D ++IDTAGRLH +  LM  + ++  +        P+ +L V+DA TGQ+A+   
Sbjct: 181 REKKNDYVLIDTAGRLHIDETLMDELKQIKEL------AQPNEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F G GE + DLE F     S+ 
Sbjct: 235 DSFNQQLGITGVVITKLDGDTRGGAALSIRQVTGAPIKFTGTGEKLTDLEVFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|86607811|ref|YP_476573.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556353|gb|ABD01310.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 498

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 108/311 (34%), Positives = 184/311 (59%), Gaps = 2/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             ++++ E +SW++KL +G   T L L   +  ++    LD    EE+E LL+++D+G+ 
Sbjct: 186 KPEEISVEEISWLQKLRRGLGKTRLNLINQLKALVGRGPLDQKAVEEIEALLLQADVGID 245

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             ++I++ L  +   + V  +  +  + + + +ML  +  P         ++ L+VGVNG
Sbjct: 246 ATEQIIQALQKRMREEVVPPEEAVKYLKQQMRQMLT-VGNPTFAPQRDTLNIWLIVGVNG 304

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT IGK++     +G + ++AA DTFR+AA++QLK+WA+R   + + +    +D AA
Sbjct: 305 AGKTTTIGKIAHVARKSGYRCLIAAADTFRAAAVEQLKVWAERAGVEVIANPSPNADPAA 364

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A   A+A+  ++L++DTAGRL N   LM  + K+ R++ +  P A    L VLDAT
Sbjct: 365 VVFDAITAAKARGTELLLVDTAGRLQNKKNLMDELAKIRRIVDKKAPEAKVESLLVLDAT 424

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQN LRQ E+F   A  +G+I+TK+D TA+GG  + I     +P+ F+G GEG+ DL P
Sbjct: 425 QGQNGLRQAEVFAEAAKLSGVILTKLDSTAKGGIALAITQQMNLPIRFIGAGEGLEDLRP 484

Query: 301 FVAKDFSAVIT 311
           F + +F   + 
Sbjct: 485 FSSYEFVEALL 495


>gi|331016301|gb|EGH96357.1| signal recognition particle protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 458

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGGGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +    K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDVEMMGEIQALHAATKPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|148906612|gb|ABR16458.1| unknown [Picea sitchensis]
          Length = 573

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 154/311 (49%), Gaps = 15/311 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT    +   KL +   D+++   + + +R+ +   L+ +D+ + V ++ V+ 
Sbjct: 83  RAEMFGQLTTSLEAAWSKLSKQ--DVLTRENMAEPMRD-IRRALLEADVSLPVVRRFVKV 139

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +     V     S Q+++  V++ + K++       ++     P VIL+ G+ GVGK
Sbjct: 140 VTEQAIGVGVVPGVRSDQQLVKVVNDELVKLMGGEVAELDF-AKTGPTVILMAGLQGVGK 198

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT   KL+  +   G   ML A D +R AAIDQL I   +       +        +A +
Sbjct: 199 TTACAKLALYLKKKGKNCMLVAADVYRPAAIDQLVILGKQVEVPVYEAGTKVTPMEIAKQ 258

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++A+ K +DV+I+DTAGRL  +  +M  + ++ + +       P  VL V+DA TGQ 
Sbjct: 259 GLEEAKKKDMDVVIVDTAGRLQVDKSMMDELKQVKQAMN------PTEVLLVVDAMTGQE 312

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + +      P+ F+G GE + DLEPF   
Sbjct: 313 AAALVAAFNLEIGITGAILTKLDGDSRGGAALSVREVSGKPIKFVGQGERMEDLEPFYPD 372

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 373 RMASRILGMGD 383


>gi|238758266|ref|ZP_04619445.1| Signal recognition particle protein [Yersinia aldovae ATCC 35236]
 gi|238703596|gb|EEP96134.1| Signal recognition particle protein [Yersinia aldovae ATCC 35236]
          Length = 453

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELIAAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A+    DF  S+       +   A +QA+
Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDAQEKPIDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQIHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|315648170|ref|ZP_07901271.1| signal recognition particle protein [Paenibacillus vortex V453]
 gi|315276816|gb|EFU40159.1| signal recognition particle protein [Paenibacillus vortex V453]
          Length = 460

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 147/306 (48%), Gaps = 16/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+   + +    ++ +        E+   L+ +D+   V +  V ++  K  
Sbjct: 2   AFEGLTSRLQNVFSKLRGKGKVSEEDVTAAMREVRLALLEADVNFKVVKDFVSKVKEKAI 61

Query: 76  AKDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V         ++  V++ + +++           +  P VI++ G+ G GKTT  GK
Sbjct: 62  GKEVMDSFTPGMVIIDIVNKEMTELMGGSQAKL-VKSNKPPTVIMMAGLQGAGKTTTSGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +     + +L AGD +R AAI QL++  ++ +         +    +A +  + A+
Sbjct: 121 LAKLLQKQNSRPLLVAGDIYRPAAIKQLEVLGEQINVPVFSLGDKTSPVEIAKQGLQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D +IIDTAGRLH +  LM  + ++  V+       P  VL V+DA TGQ+A+   E
Sbjct: 181 DNGHDYVIIDTAGRLHVDEELMEELKQIHSVVN------PDEVLLVVDAMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG  RGG  + +      P+ F  +GE I+ LEPF  +  ++ I
Sbjct: 235 SFNQQLTLTGVVLTKLDGDTRGGAALSVKAVTGCPIKFAALGEKIDALEPFHPERMASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|317484960|ref|ZP_07943844.1| signal recognition particle protein [Bilophila wadsworthia 3_1_6]
 gi|316923765|gb|EFV44967.1| signal recognition particle protein [Bilophila wadsworthia 3_1_6]
          Length = 512

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +    +L ++ +R+ L +    L+ +D+   V ++ VE +  +   
Sbjct: 2   FESLSDRLSSAFRSLSGRAQLTEENIRDGLREVRLALLEADVNFKVVKEFVERVRERVLG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q+++  V + +  +L   +   N   +  P VI++VG+ G GKTT  GKL
Sbjct: 62  QKVEKSLTPTQQLVKAVHDELVTLLGGETTELNLRGAQ-PGVIMMVGLQGSGKTTSAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +    ++  L   D +R AAIDQL+  A +       S        +   A + A+ 
Sbjct: 121 ANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKPVDIVRAALEDAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K+  V+I+DTAGRLH ++ LM  +  +   ++      P  +L V DA TGQ+A+   E 
Sbjct: 181 KQCTVVILDTAGRLHIDAPLMQELVDIKSAVQ------PQEILFVADAMTGQDAVTVAEA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TKMDG ARGG  + I       V ++GVGE ++DLE F  +  +  I 
Sbjct: 235 FNKDLALTGVVLTKMDGDARGGAALSIKSVTGASVKYVGVGEKLSDLEVFHPERVAGRIL 294

Query: 312 GCLDY 316
           G  D 
Sbjct: 295 GMGDM 299


>gi|226501792|ref|NP_001142003.1| hypothetical protein LOC100274153 [Zea mays]
 gi|194706754|gb|ACF87461.1| unknown [Zea mays]
          Length = 556

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/311 (30%), Positives = 154/311 (49%), Gaps = 15/311 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KL+    D+++   + + +R+ +   L+ +D+ + V ++ +E 
Sbjct: 72  RAEMFGQLTTGLESAWNKLRGV--DVLTKENIAEPMRD-IRRALLEADVSLPVVRRFIES 128

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  K    DV       Q+++  VS+ + +++        +  S  P +IL+ G+ GVGK
Sbjct: 129 VSEKAVGTDVIRGVRPDQQLVKVVSDELVQLMGGEVSDLVFAKSG-PTIILLAGLQGVGK 187

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TTV  KL+  +   G   ML A D +R AAIDQL I   +           +  + +A  
Sbjct: 188 TTVCAKLAFYLKKLGKSCMLVAADVYRPAAIDQLTILGKKVGVPVYSEGTEAKPSQIAKN 247

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             K+A+  K DV+I+DTAGRL  +  +M  + ++ + +       P  VL V+DA TGQ 
Sbjct: 248 GLKEAKVNKADVIIVDTAGRLQVDKAMMNELKEVKKAVN------PTEVLLVVDAMTGQE 301

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + +      P+ F+G GE I DLEPF   
Sbjct: 302 AAGLVSSFNDEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGQGERIEDLEPFYPD 361

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 362 RMAQRILGMGD 372


>gi|317121792|ref|YP_004101795.1| signal recognition particle-docking protein FtsY [Thermaerobacter
           marianensis DSM 12885]
 gi|315591772|gb|ADU51068.1| signal recognition particle-docking protein FtsY [Thermaerobacter
           marianensis DSM 12885]
          Length = 311

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 128/300 (42%), Positives = 184/300 (61%), Gaps = 2/300 (0%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             KL  G A T  +L   I  ++    LD+ + E+LE +LI +D+GVA  Q+++E L  +
Sbjct: 3   WSKLKAGLARTREQLAGRIRAVVQGAALDESLYEDLEAVLITADVGVATTQRLLERLRER 62

Query: 74  RYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKL 131
             A+ V     +   ++E +  +L  ++ P         P V+LVVGVNG GKTT  GKL
Sbjct: 63  VRAEGVRDAEAVPQLLAEEMRAVLEAVAAPPATPAGRDEPLVVLVVGVNGSGKTTTTGKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G +V++ A DTFR+AAIDQL+ W  R+ A+ V    G+D AA+A++A + A+A
Sbjct: 123 ASRYRKEGWRVVVGAADTFRAAAIDQLERWCQRSGAELVRQHPGADPAAVAFDALQAARA 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +VL++DTAGRLH    LM  + K +RVL+RLDP APH VL VLDATTGQNAL Q   
Sbjct: 183 RGANVLLVDTAGRLHTRVNLMEELRKTVRVLQRLDPTAPHEVLLVLDATTGQNALAQARH 242

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TG+++TK+DGTARGG ++ I     +PV ++G GEG +DL PF   +F   + 
Sbjct: 243 FTDAVGVTGIVLTKLDGTARGGMVVAIADQLGLPVKWVGTGEGADDLAPFDPAEFVRALF 302


>gi|303229541|ref|ZP_07316329.1| signal recognition particle-docking protein FtsY [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515666|gb|EFL57620.1| signal recognition particle-docking protein FtsY [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 311

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 121/306 (39%), Positives = 176/306 (57%), Gaps = 7/306 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  K+ +G   T     + +   II    +DD   ++LE +++ SD+G    + +++E+
Sbjct: 4   GFFNKIKEGLEKTRKSFVKNVETVIIGYAEIDDDFLDDLEAVMLTSDLGPKTTEYLMKEI 63

Query: 71  LTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                   ++    +    E  I +ML+           H P VILVVGVNGVGKTT I 
Sbjct: 64  RRGVTEGVINNTGDVMPFMEDRITEMLVDQEDEIIL---HHPEVILVVGVNGVGKTTTIA 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+   +  G KV++AAGDTFR+AA DQL IWADR     V  + G+D AA+ Y+A + A
Sbjct: 121 KLANYYTKEGKKVIIAAGDTFRAAAADQLSIWADRVGVPIVKHKEGADPAAVVYDAMEAA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D++I+DTAGRLH    LM  + KM RV       APH  L VLD TTGQNA+ Q 
Sbjct: 181 KARNADMVIVDTAGRLHTKVNLMEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNAVSQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F       G+++TK+DGTA+GG +I I     +PV ++GVGEG++DL PF AK+F+  
Sbjct: 241 KLFGQAVPVNGIVVTKLDGTAKGGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKEFANA 300

Query: 310 IT--GC 313
           +   G 
Sbjct: 301 LFNKGM 306


>gi|325978265|ref|YP_004287981.1| signal recognition particle subunit FFH/SRP54 protein
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325178193|emb|CBZ48237.1| Signal recognition particle subunit FFH/SRP54 protein
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 521

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q+++  V+E + ++L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQIVKIVNEELTEILGSETAELEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  D   + ++ A D +R AAIDQLK   ++ +           A  +      QA
Sbjct: 121 LANKLIKDENARPLMIAADIYRPAAIDQLKTLGNQINVPVFDMGTDHSAVEIVTNGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +IIDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 KENHNDYVIIDTAGRLQIDEKLMEELRDVKALAN------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 DEFNKQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|313201905|ref|YP_004040563.1| signal recognition particle protein [Methylovorus sp. MP688]
 gi|312441221|gb|ADQ85327.1| signal recognition particle protein [Methylovorus sp. MP688]
          Length = 450

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L++ +  +    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSGRLQQVVKTLRGQARLSEENISDAMREVRMALLEADVALPVVKEFIAQVKERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V E + +++   +   N      P +IL+ G+ G GKTT   KL
Sbjct: 62  RDVLQSLTPGQAVIQVVHEELTRLMGEQNVGLNLAAV-PPAIILMAGLQGSGKTTTSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ + +   KV+LA+ D +R AAI+QLK  A     D   S        +A      A+ 
Sbjct: 121 ARLLKEQKKKVLLASADVYRPAAIEQLKTMAKSLEVDCFDSNASQKPQDIAANVLDFAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I DTAGRL  +  +MA I ++  +L       P   L V+DA  GQ+A+     
Sbjct: 181 HFYDVVIFDTAGRLGIDEAMMAEIQQLHALLN------PVETLFVVDAMQGQDAVNTARA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG ARGG  + +      P+ F+GV E ++ LE F  +  ++ + 
Sbjct: 235 FGETLPLTGVILTKLDGDARGGAALSVRHITGKPIKFVGVSEKVDGLEVFHPERMASRVL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|229918605|ref|YP_002887251.1| signal recognition particle protein [Exiguobacterium sp. AT1b]
 gi|229470034|gb|ACQ71806.1| signal recognition particle protein [Exiguobacterium sp. AT1b]
          Length = 446

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  ++ +    ++ +     +  E+   L+ +D+   V ++ V ++  +  
Sbjct: 2   AFEGLSERLQSTLSKMRGKGKISETDVKEMMREVRLALLEADVNFKVVKQFVNDVKERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E +  ++     P  +     P V+++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVVKIVHEELSNLMGSDVVPITFS-QKPPTVVMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +        +L A D +R AAI QL+    +                +  +A + A
Sbjct: 121 LANLIRKKHNRSPLLVAADIYRPAAIKQLETLGKQLDLPVFSLGDQVKPEEIVTKALEYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  +  +  + K      P+ +  V+D+ TGQ+A+   
Sbjct: 181 KTNHHDFVLIDTAGRLHIDETLMGELENVKTIAK------PNEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F+G+GE ++ LEPF  +  ++ 
Sbjct: 235 DSFNEKLGITGVVLTKLDGDTRGGAALSIKAVTGAPIKFVGLGEKLDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|212639593|ref|YP_002316113.1| signal recognition particle GTPase [Anoxybacillus flavithermus WK1]
 gi|212561073|gb|ACJ34128.1| Signal recognition particle GTPase [Anoxybacillus flavithermus WK1]
          Length = 332

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 131/321 (40%), Positives = 194/321 (60%), Gaps = 4/321 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+A ++ +   K  +G   T       + D+I+  R++D+   EELE++LI SD+GVA
Sbjct: 8   KEKIAKQADTVTEKFKRGLEKTRDSFAGKVNDLIARYRKVDEEFFEELEEILIASDVGVA 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVG 118
                ++EL  +   +++   + +Y V       +   S     + + +P    VIL VG
Sbjct: 68  TVMDFIDELKMEVKRRNIQDPKEMYSVISEKLIDIYEASGEEKTELNIQPNGLTVILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K+   G KVMLAAGDTFR+ AI+QL++W +R   + +    GSD 
Sbjct: 128 VNGVGKTTTIGKLAYKLKSEGKKVMLAAGDTFRAGAIEQLEVWGERVGVEVIKQSAGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+++ VD+L+ DTAGRL N   LM  + K+ RV++R  P APH VL VLD
Sbjct: 188 AAVMYDAIQAAKSRNVDILLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVLD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL
Sbjct: 248 ATTGQNAMSQAKTFKEATNVTGIVLTKLDGTAKGGIVLAIRHELNIPVKFVGLGEKMDDL 307

Query: 299 EPFVAKDFSAVITGCLDYGEE 319
           EPF A+ F   +       EE
Sbjct: 308 EPFNAEQFVYGLFSSFMEREE 328


>gi|332880087|ref|ZP_08447771.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332682083|gb|EGJ54996.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 320

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 124/298 (41%), Positives = 181/298 (60%), Gaps = 6/298 (2%)

Query: 17  LTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   +     + +   II   ++D+ V ++LE++LI SD+GV    KI+E +  +  
Sbjct: 18  LNKGLEKSKNSFFDRLGKAIIGKSKVDEEVLDDLEEVLIASDVGVNTTLKIIERIEARVA 77

Query: 75  YAKDVSVQRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K +    +   + E I  +L       +  F+     +P+V++VVGVNG GKTT IGK
Sbjct: 78  KDKYLGTSELNKILREEIGSLLSETHTGEATDFSLPADKKPYVMMVVGVNGAGKTTTIGK 137

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ + +  GLKV+L A DTFR+AAIDQL++WADRT    +  ++GSD A++AY+    A 
Sbjct: 138 LASQFTKKGLKVVLGAADTFRAAAIDQLQVWADRTGVPMIKQQLGSDPASVAYDTLTSAV 197

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+IIDTAGRLHN   LM  + K+ RV++++   APH VL VLD +TGQNA  Q +
Sbjct: 198 KQGADVVIIDTAGRLHNKINLMNELSKIKRVMQKVIADAPHEVLLVLDGSTGQNAFEQAK 257

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            F      T L +TK+DGTA+GG +I I    +IPV ++GVGEGI+DL+ F   +F  
Sbjct: 258 EFTKATEVTALAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIDDLQIFNKYEFVD 315


>gi|310641514|ref|YP_003946272.1| signal recognition (srp) component [Paenibacillus polymyxa SC2]
 gi|309246464|gb|ADO56031.1| Signal recognition (SRP) component [Paenibacillus polymyxa SC2]
          Length = 458

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 149/306 (48%), Gaps = 16/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+   + +    ++ +        E+   L+ +D+   V +  + ++  K  
Sbjct: 2   AFEGLSTRLQNVFSKLRGKGKVSEDDVAQAMREVRLALLEADVNFKVVKDFIAKVKEKSV 61

Query: 76  AKDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V         ++  V++ + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GKEVMDSFTPGMVIIDIVNKELTELMGGSQAKL-AKANKPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +     + +L AGD +R AAI QL+I  ++ +A        +    +A +  + A+
Sbjct: 121 LAKLLQKQNHRPLLVAGDIYRPAAIKQLQILGEQINAPVFTLGDQTSPVEIAKQGLQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D +IIDTAGRLH +  LM  + ++   +K      P  VL V+D+ TGQ+A+   E
Sbjct: 181 DNGNDYVIIDTAGRLHVDEELMEELRQIHTNVK------PDEVLLVVDSMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG  RGG  + +      P+ F  +GE ++ +EPF  +  ++ I
Sbjct: 235 HFNNSLELTGVVLTKLDGDTRGGAALSVKAVTGCPIKFATLGEKLDAMEPFHPERMASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|332521170|ref|ZP_08397628.1| signal recognition particle-docking protein FtsY [Lacinutrix
           algicola 5H-3-7-4]
 gi|332043263|gb|EGI79460.1| signal recognition particle-docking protein FtsY [Lacinutrix
           algicola 5H-3-7-4]
          Length = 324

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 128/320 (40%), Positives = 187/320 (58%), Gaps = 22/320 (6%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           +S+ +K         L KG   TS      ++  ++ + ++DD V + LE++L+ SD+GV
Sbjct: 1   MSFFKKIFSSEKKETLDKGLEKTSTSFLGKLSKAVAGKSKVDDDVLDNLEEVLVSSDVGV 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSK-----------PFNWDFS 108
               K++E +  +    K +    +   + E I  +L   +            P   D  
Sbjct: 61  NTTLKVIERIEARVAKDKYLGTDELNRILREEIAGLLSETNSGEETEYKIPTLPPQEDGK 120

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P+V++VVGVNGVGKTT IGKL+ +    GLKV+L A DTFR+AAIDQL++WADR    
Sbjct: 121 KTPYVLMVVGVNGVGKTTTIGKLAYQFKKQGLKVVLGAADTFRAAAIDQLQVWADRVDVP 180

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V  E+GSD A++A++A +   ++  DV+IIDTAGRLHN   LM  + K+ RV++++   
Sbjct: 181 MVRQEMGSDPASVAFDALESGVSQDADVIIIDTAGRLHNKVNLMNELTKVKRVMQKVIGD 240

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
           APH VL VLD +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV +
Sbjct: 241 APHDVLLVLDGSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKY 300

Query: 289 LGVGEGINDLEPFVAKDFSA 308
           +GVGEGI DL+ F   +F  
Sbjct: 301 IGVGEGIEDLQVFNKYEFVD 320


>gi|327462217|gb|EGF08544.1| signal recognition particle protein [Streptococcus sanguinis SK1]
          Length = 524

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSNTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTDVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|254414380|ref|ZP_05028147.1| signal recognition particle-docking protein FtsY, putative
           [Microcoleus chthonoplastes PCC 7420]
 gi|196179055|gb|EDX74052.1| signal recognition particle-docking protein FtsY, putative
           [Microcoleus chthonoplastes PCC 7420]
          Length = 584

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 105/315 (33%), Positives = 182/315 (57%), Gaps = 5/315 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + + V++E +SW+++L  G   T   L   +  I+    L+     E+E LL+++D+G+ 
Sbjct: 268 TPEDVSAEEISWLKQLRSGLGKTRRGLVNQLKSIVGQGPLNQDAVMEIEALLLQADVGIE 327

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVV 117
               I+E L  +   + +  ++ +  + +++  +L    +       +      ++ L+ 
Sbjct: 328 ATDYIIETLQARMRQEVLPPEQAIAYLKQILRDLLDKPCRESYGSTFFPEKDTLNIWLMT 387

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT IGKL+   + +  K ++ A DTFR+AA++Q+KIW +R+S + + +    +
Sbjct: 388 GVNGAGKTTTIGKLAHLANKSDYKCLIGAADTFRAAAVEQVKIWGERSSTEVIANPGKNT 447

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ +++   AQA+  ++L++DTAGRL N   LM  + K+ R++ +  P A    L V
Sbjct: 448 DPAAVVFDSITAAQARNTELLLVDTAGRLQNKKNLMEELAKIRRIIDKKAPEAKVESLLV 507

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + IV    +P+ F+G GEGI 
Sbjct: 508 LDATLGQNGLRQAEVFSEAAKLSGVVLTKLDGTAKGGVALAIVQQLGLPIRFVGAGEGIE 567

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF + +F   + 
Sbjct: 568 DLRPFSSYEFVEALL 582


>gi|329954831|ref|ZP_08295848.1| signal recognition particle-docking protein FtsY [Bacteroides
           clarus YIT 12056]
 gi|328526935|gb|EGF53946.1| signal recognition particle-docking protein FtsY [Bacteroides
           clarus YIT 12056]
          Length = 319

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 184/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV    K
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLK 64

Query: 66  IVEELLTKRY-AKDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I+E +  +    K ++ Q +   + + I  +L   +      F    + +P+VI+VVGVN
Sbjct: 65  IIERIEKRAADEKYMNAQELNMILRDEIAALLTENNSDDVDDFETPITKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVIKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +
Sbjct: 185 VAFDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FRKKEFVDSLFG 316


>gi|150021431|ref|YP_001306785.1| signal recognition particle-docking protein FtsY [Thermosipho
           melanesiensis BI429]
 gi|149793952|gb|ABR31400.1| signal recognition particle-docking protein FtsY [Thermosipho
           melanesiensis BI429]
          Length = 295

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 123/301 (40%), Positives = 191/301 (63%), Gaps = 9/301 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  K  KG   T       I +++S ++LD+ V+EE+E+LLI SD+GV   + I++++
Sbjct: 1   MGFFEKFKKGLQKTRETFFGKIKEVLSGKKLDEEVKEEIEELLILSDVGVEATEYIIKKI 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                 ++ S +     + +++ +ML   S     +   +P VI +VGVNG GKTT  GK
Sbjct: 61  ------EESSGEDAYETLKKVLVEML---SDNTELNLFEKPTVINMVGVNGSGKTTTAGK 111

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G  V+LAA DTFR+AAIDQLK+W +RT++  +  + G+D+AA+A++A   A 
Sbjct: 112 LASYFSKNGKSVVLAACDTFRAAAIDQLKVWGERTNSTVIAHQEGADSAAVAFDAVNHAI 171

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +K  D++I+DTAGRLH    LM  + K+ RV+K+    APH +L V+DA TGQN L+Q +
Sbjct: 172 SKNKDIVILDTAGRLHTKKNLMEELRKINRVIKKKLESAPHEILLVIDAVTGQNGLQQAK 231

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F      TG+++TK+DGTA+GG  I IV    IP+ F+G+GEG++DL+PF A+DF   +
Sbjct: 232 IFKEFVNITGIVLTKLDGTAKGGIAIAIVKELGIPIKFVGLGEGVDDLKPFDAEDFVNAL 291

Query: 311 T 311
            
Sbjct: 292 L 292


>gi|323489558|ref|ZP_08094785.1| signal recognition particle-like (SRP) component [Planococcus
           donghaensis MPA1U2]
 gi|323396689|gb|EGA89508.1| signal recognition particle-like (SRP) component [Planococcus
           donghaensis MPA1U2]
          Length = 452

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 157/307 (51%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +T I    ++++     +  E+   LI +D+ + V ++ V+++  +  
Sbjct: 2   AFEGLSERLQGTMTKIKGKGKVNEADVKEMMREVRFALIEADVNLKVVKEFVKKISERAI 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V + + +++    +   +  + +P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMDSLTPGQQVVKIVKDELTELMGGEERKIEFS-TKQPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    + S              +A +A + A
Sbjct: 121 LANLLRRKHNRKPLLVAADVYRPAAIQQLETIGKQLSLPVFSKGTDMSPVEIARQAIEHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D +IIDTAGRLH +  LM  +  +  + +      P  +  V+D+ TGQ+A+   
Sbjct: 181 KAEHLDTVIIDTAGRLHVDEALMQELKDIRALKE------PDEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F    G TG+++TK+DG  RGG  + I    + P+ F+G+GE ++ LE F  +  ++ 
Sbjct: 235 QNFDEAIGITGVVLTKLDGDTRGGAALSIRSVTQKPIKFVGMGEKMDALEAFHPERMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|324994452|gb|EGC26365.1| signal recognition particle protein [Streptococcus sanguinis SK678]
          Length = 524

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSNTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTDVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|163790807|ref|ZP_02185232.1| signal recognition particle-docking protein FtsY [Carnobacterium
           sp. AT7]
 gi|159873875|gb|EDP67954.1| signal recognition particle-docking protein FtsY [Carnobacterium
           sp. AT7]
          Length = 332

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 181/306 (59%), Gaps = 10/306 (3%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E+     K  KG   T     + + ++ ++ R +D+   +ELE++LI +D+G     +I 
Sbjct: 18  ETTEVTEKYEKGLEKTRKTFSQRMNELFANFRTVDEDFFDELEEVLIGADVGFESTMEIT 77

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP------HVILVVGVNG 121
           + L  +   K+        +V ++I + ++ + +  N D            VIL+VGVNG
Sbjct: 78  DALRQEVKLKNAKASN---EVQQVIIEKMVEIYEKGNTDKPEININPAGLTVILLVGVNG 134

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGK++      G KVMLAAGDTFR+ AI+QL +W DR  A+ V  + G D AA+
Sbjct: 135 VGKTTTIGKMAHLYQQEGKKVMLAAGDTFRAGAIEQLHVWGDRVGAEVVSGKAGGDPAAV 194

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A K+A+ K+ D+L +DTAGRL N   LM  + KM R+++R  P  PH VL VLDATT
Sbjct: 195 VFDAIKEAKQKEADILFVDTAGRLQNKVNLMNELEKMKRIIEREIPGGPHEVLLVLDATT 254

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL+ F
Sbjct: 255 GQNAMNQAKQFKQTTDVTGIVLTKLDGTAKGGIVLAIRKELDIPVKFVGLGESMDDLQVF 314

Query: 302 VAKDFS 307
              ++ 
Sbjct: 315 DPNEYI 320


>gi|227539202|ref|ZP_03969251.1| signal recognition particle-docking protein FtsY [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300770676|ref|ZP_07080555.1| cell division protein FtsY [Sphingobacterium spiritivorum ATCC
           33861]
 gi|227240884|gb|EEI90899.1| signal recognition particle-docking protein FtsY [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|300763152|gb|EFK59969.1| cell division protein FtsY [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 324

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 126/300 (42%), Positives = 183/300 (61%), Gaps = 5/300 (1%)

Query: 17  LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T       IT  ++    +DD V +ELE++L+ SD+GV    KI++ +  +  
Sbjct: 20  LDKGLEKTKEGFLSKITKAVVGKSTVDDDVLDELEEILVTSDVGVTTTLKIIDRIQARVA 79

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKL 131
             K ++   +   + + I  +L   +     +F   +H+P+VI+VVGVNGVGKTT IGKL
Sbjct: 80  KDKYINTSELNNLLKDEIQALLAENNSSDFENFEYGNHKPYVIMVVGVNGVGKTTTIGKL 139

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++  AG KV+L A DTFR+AA+DQLK+W +R     V   +GSD A++A++  K A +
Sbjct: 140 AHQLKAAGNKVVLGAADTFRAAAVDQLKLWGERVGVRVVAQAMGSDPASVAFDTIKSAVS 199

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV IIDTAGRLHN   LM  +GK+  V++++ P APH +L VLDA+TGQNA+ Q   
Sbjct: 200 NGDDVAIIDTAGRLHNKVGLMNELGKIKNVMQKVIPGAPHEILLVLDASTGQNAIEQCTQ 259

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        L +TK+DGTA+GG +I I    KIPV ++GVGE I+DL+ F  K+F   + 
Sbjct: 260 FTQATDVNALALTKLDGTAKGGVVIGISDQFKIPVKYIGVGEKIDDLQLFNKKEFVDSLF 319


>gi|332638237|ref|ZP_08417100.1| signal recognition particle protein [Weissella cibaria KACC 11862]
          Length = 488

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 144/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  ++ +    ++ D  +RE   E+   L+ +D+   V +  V  +  K  
Sbjct: 2   AFEGLTERLQNALSGLRRKGKVTDADLRETMREIRLALLEADVNFTVVKDFVRNVREKAA 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              V       Q+++  V++ +  M+     P N      P VI++VG+ G GKTT  GK
Sbjct: 62  GAKVLEGLNPAQQIVSIVNDELTAMMGESEVPLNVS-DKIPTVIMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK   ++           +D   +  +   +A
Sbjct: 121 LALKLKSEQNARPLMIAADVYRPAAIDQLKTLGEQIDVPVFEMGTDADPRDIVRQGLAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D + ID AGRL  +  LM  +  +  +        P  +L V+DA TGQNA+   
Sbjct: 181 AELKSDYVFIDAAGRLQIDEALMQELADVKEI------AQPDEILLVVDAMTGQNAVETA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 235 EGFNERLDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMTDLDIFYPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|320354484|ref|YP_004195823.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfobulbus propionicus DSM 2032]
 gi|320122986|gb|ADW18532.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfobulbus propionicus DSM 2032]
          Length = 449

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 152/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L+     +    RL ++ ++E   E+   L+ +D+   V ++ +  +  K   
Sbjct: 2   FENLTDRLESTFKKLRGHGRLTEENIQEAMGEVRTALLEADVNFGVVKEFIASVTEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + + ++L   ++P   D    P VI++ G+ G GKTT   KL
Sbjct: 62  REVLTSLSPGQQVVKVVHDELVELLGSQAEPLKLDGRQ-PVVIMLAGLQGSGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K++ + G    L   D +R AAI+QL +  ++       S        +A +A  +A+ 
Sbjct: 121 AKQLKEKGRAPFLVPADVYRPAAIEQLHVLGEQVGVPVYASTTEQKPVDIARQAVAEART 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +IIDTAGRLH +  LMA + ++ R +          VL V DA TGQ+A+   + 
Sbjct: 181 GHYDTVIIDTAGRLHVDEALMAELQEISRTVPLA------EVLFVADAMTGQDAVTVADK 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TKM+G ARGG  + +      P+ F+GVGE +  LE F     ++ I 
Sbjct: 235 FNTDLEITGVVLTKMEGDARGGAALSVKKVTGKPIKFVGVGESVEALEVFHPDRAASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|294776167|ref|ZP_06741656.1| signal recognition particle-docking protein FtsY [Bacteroides
           vulgatus PC510]
 gi|294449990|gb|EFG18501.1| signal recognition particle-docking protein FtsY [Bacteroides
           vulgatus PC510]
          Length = 319

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 181/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           ++  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   NFFSKEKKETLDKGLSKTKENVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVN 120
           I++ +  +    K V+ Q +   + E I  +L       S  F      +P+VI+VVGVN
Sbjct: 65  IIKRIEERVAKDKYVNTQELNKILREEIAALLTENNTVDSDDFTVPEGKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++GSD A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKTVYLGAADTFRAAAVEQLDIWGERVGVPVIKQKMGSDPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++   APH VL VLD +
Sbjct: 185 VAFDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVADAPHEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEGI D++ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISEQFKIPVKYIGLGEGIEDMQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FRKKEFVDSLFG 316


>gi|81300580|ref|YP_400788.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Synechococcus elongatus PCC 7942]
 gi|2126515|pir||S68160 probable RNA binding protein ffh - Synechococcus sp. (strain PCC
           7942)
 gi|81169461|gb|ABB57801.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Synechococcus elongatus PCC 7942]
          Length = 496

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++  T +    ++ +       +E+   L+ +D+ + V ++ + ++  K   
Sbjct: 13  FDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAVG 72

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+ +  V + + +++     P     +  P VIL+ G+ G GKTT   KL
Sbjct: 73  TQVISGIRPDQQFIKVVYDELVQVMGETHVPL-AQAAKAPTVILMAGLQGAGKTTATAKL 131

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAIDQL     +           ++   +A +  ++A+ 
Sbjct: 132 ALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKARQ 191

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D +I+DTAGRL  ++ +M  + ++   +      APH VL V+D+  GQ A      
Sbjct: 192 EGIDTVIVDTAGRLQIDTEMMEELAQVKEAI------APHEVLLVVDSMIGQEAASLTRS 245

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TK+DG +RGG  + I      P+ F+G+GE +  L+PF  +  ++ I 
Sbjct: 246 FHERIGITGAILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRIL 305

Query: 312 GCLD 315
           G  D
Sbjct: 306 GMGD 309


>gi|288800011|ref|ZP_06405470.1| signal recognition particle-docking protein FtsY [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288333259|gb|EFC71738.1| signal recognition particle-docking protein FtsY [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 319

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 126/311 (40%), Positives = 181/311 (58%), Gaps = 11/311 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
            +  K     L KG   T   +   +   I+   ++DD V + LE++LI SD+GV    K
Sbjct: 5   GFFNKNKKETLDKGLEKTKQSVFGKLAKAIVGKSKVDDEVLDSLEEILISSDVGVDTTLK 64

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVN 120
           I+E +  +    K VS   +   + E I  +L       S  ++     +P+VILVVGVN
Sbjct: 65  IIERIEERIARDKYVSTSELNGILREEISALLTENNTFDSDSWDLPSDRKPYVILVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG KV L A DTFR+AA++Q+ IW DR     V  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKKVYLGAADTFRAAAVEQISIWGDRVGVPVVKQQMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A+A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  VL VLD +
Sbjct: 185 VAFDTLSSAKANDADVVLIDTAGRLHNKVGLMNELKKIKDVMKKVFPTAPDEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ +L+ 
Sbjct: 245 TGQNAFEQAKQFSAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMENLQL 304

Query: 301 FVAKDFSAVIT 311
           F  K F   + 
Sbjct: 305 FNKKQFVDSLF 315


>gi|58337566|ref|YP_194151.1| signal recognition protein Ffh [Lactobacillus acidophilus NCFM]
 gi|227904208|ref|ZP_04022013.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus acidophilus
           ATCC 4796]
 gi|58254883|gb|AAV43120.1| signal recognition protein Ffh [Lactobacillus acidophilus NCFM]
 gi|227868227|gb|EEJ75648.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus acidophilus
           ATCC 4796]
          Length = 476

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S ++++ + ++    ++ +        E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFENLSERIQKALKNLTGKGKVSEEDINKASREIRLALLEADVNFKVVKDFIKTIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+V+  V+E + KM+   + P N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQVIKIVNEELTKMMGEEAVPLNKS-KHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      + +L AGD +R AA+DQLK   ++            D A +  +   +A
Sbjct: 121 LAYHLQKTQKARPLLIAGDIYRPAAVDQLKQIGEQLKVPVFSENGEKDVAKIVQDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM  + ++ +V        P ++L V+DA TGQ A    
Sbjct: 181 DKNKNDYVLIDTAGRLEIDEPLMEELERVKKV------ADPDNILLVVDAMTGQAATDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F G GE ++DL+ F     ++ 
Sbjct: 235 KGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|288905279|ref|YP_003430501.1| signal recognition particle protein [Streptococcus gallolyticus
           UCN34]
 gi|288732005|emb|CBI13570.1| signal recognition particle protein [Streptococcus gallolyticus
           UCN34]
          Length = 521

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q+++  V+E + ++L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQIVKIVNEELTEILGSETAELEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  D   + ++ A D +R AAIDQLK   ++ +           A  +      QA
Sbjct: 121 LANKLIKDENARPLMIAADIYRPAAIDQLKTLGNQINVPVFDMGTDHSAVEIVTNGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +IIDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 KENHNDYVIIDTAGRLQIDEKLMEELRDVKALAN------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 DEFNKQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|241895650|ref|ZP_04782946.1| signal recognition particle protein Ffh [Weissella
           paramesenteroides ATCC 33313]
 gi|241871228|gb|EER74979.1| signal recognition particle protein Ffh [Weissella
           paramesenteroides ATCC 33313]
          Length = 485

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 144/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ ++ +    ++ D  +RE   E+   L+ +D+   V +  V  +  K  
Sbjct: 2   AFEGLTDRLQKALSGLRRKGKVTDADIRETMREIRLALLEADVNFKVVKDFVRNVREKAS 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              V       Q+++  V++ +  M+   +   N      P VI++VG+ G GKTT  GK
Sbjct: 62  GAKVLEGLNPAQQIVSIVNDELTAMMGESAVALNKS-PKIPTVIMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+ +    + ++ A D +R AAI+QLK   ++            +   +     ++A
Sbjct: 121 LALKLKNEQNARPLMIAADVYRPAAIEQLKTLGEQIDVPVFDMGTDVNPREIVKAGMEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D + ID AGRL  +  LM  +  +  +        P  ++ V+DA TGQNA+   
Sbjct: 181 AELKSDYVFIDAAGRLQIDEELMQELADVKDI------AHPDEIMLVVDAMTGQNAVETA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 235 EGFNDRLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMTDLDIFYPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|313203647|ref|YP_004042304.1| signal recognition particle-docking protein ftsy [Paludibacter
           propionicigenes WB4]
 gi|312442963|gb|ADQ79319.1| signal recognition particle-docking protein FtsY [Paludibacter
           propionicigenes WB4]
          Length = 316

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 122/302 (40%), Positives = 183/302 (60%), Gaps = 8/302 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L +G + T   +   +T  ++ + ++DD V + LE++LI SD+GV    +I+E +  KR 
Sbjct: 15  LDQGLSKTKESVFSKLTRAVAGKSKVDDEVLDNLEEVLITSDVGVETTLRIIERI-EKRV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A+D  V+   +   + + I  +L   +      F+ +    P+VI+VVGVNGVGKTT IG
Sbjct: 74  AQDKYVNTSELNGILKQEIAGLLAENNSDTPIDFDAELPTTPYVIMVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ + + AG KV L A DTFR+AA+DQL IW +R     +  ++G+D A++AY+    A
Sbjct: 134 KLAHQFTKAGKKVYLGAADTFRAAAVDQLVIWGERAGVPVIKQKMGADPASVAYDTIASA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV+IIDTAGRLHN   LM  + K+  V++++ P AP+ VL VLD +TGQNA  Q 
Sbjct: 194 KANNADVVIIDTAGRLHNKINLMNELTKIKNVMQKVVPSAPNEVLLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      T L +TK+DGTA+GG +I I    KIPV ++G+GEG+  L+ F    F   
Sbjct: 254 KQFTKATDVTALAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEHLQVFDKDRFVET 313

Query: 310 IT 311
           + 
Sbjct: 314 LF 315


>gi|310658884|ref|YP_003936605.1| signal recognition particle protein [Clostridium sticklandii DSM
           519]
 gi|308825662|emb|CBH21700.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Clostridium sticklandii]
          Length = 448

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + KL+  + ++    +L +   +    E++  L+ +D+   V +  ++++  +   
Sbjct: 3   FENLAEKLQSTLKNLKGKGKLTEKDVDLAMREVKLALLEADVHYKVVKDFIKKVKERSIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V+E + +++  +    N   S  P VI++VG+ G GKT+  GKL
Sbjct: 63  SEVMESLTPGQQVIKIVNEELSELMGGVQSKINIS-SKPPTVIMLVGLQGAGKTSTAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + ML A D +R AAI QL+I A    A F   E  ++   +A + +++A+ 
Sbjct: 122 ALNLKKQGKQPMLVACDVYRPAAIKQLEIVASGAGAIFYSEEGNTNPVEIATKGYEKAKT 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++IIDTAGRLH +  LM  +  +   +K      PH ++ V+D+ TGQ+A+   E 
Sbjct: 182 LGYDIVIIDTAGRLHIDENLMDELKNIKSSIK------PHEIMLVVDSMTGQDAVNIAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+I+TK+DG  RGG  + I    K P+ +  VGE + DLE F     ++ I 
Sbjct: 236 FDQTLGIDGVILTKLDGDTRGGAALSIKAITKKPIKYAAVGEKLEDLEQFYPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|149192337|ref|ZP_01870543.1| signal recognition particle protein [Vibrio shilonii AK1]
 gi|148833832|gb|EDL50863.1| signal recognition particle protein [Vibrio shilonii AK1]
          Length = 459

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL D        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTDDNIKDTLREVRMALLEADVALPVVRDFIKGVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  +   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQAELESVMGESNEALDL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLHERDKKKVLVVSADVYRPAAIKQLETLATDIGVDFFPSSADQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAVDHEMMDEIKDLHSAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      PV FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPVKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|328950293|ref|YP_004367628.1| signal recognition particle-docking protein FtsY [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450617|gb|AEB11518.1| signal recognition particle-docking protein FtsY [Marinithermus
           hydrothermalis DSM 14884]
          Length = 304

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 172/308 (55%), Gaps = 10/308 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +SW ++L +G   TS  + + +          + V EELE  LI +D+GV   Q+I+EE+
Sbjct: 1   MSWFQRLKEGLKKTSQAIAQAV----PWGGDPEEVLEELEFALIAADVGVEATQEILEEV 56

Query: 71  L---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD---FSHRPHVILVVGVNGVGK 124
                K   + V    VL    +     L  L    N        +  V+L+VGVNGVGK
Sbjct: 57  RQSGKKDLREAVKQSLVLQLEPDARRAKLRKLGFTPNAKKAVVEPKGRVVLMVGVNGVGK 116

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT I KL +     G  VM  AGDTFR+A   QL +W +R     +    GSD  ALA++
Sbjct: 117 TTTIAKLGRYYRQHGRSVMFCAGDTFRAAGGAQLGLWGERLGIPVIQGPEGSDPGALAFD 176

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A +  +A+ +D+L +DTAGRLH    LM  + K+ R + + DP  P  V  VLDA TGQN
Sbjct: 177 AAQARKARGIDLLFVDTAGRLHTKHNLMEELKKIKRAIDKADPGEPGEVWLVLDAVTGQN 236

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L+Q + FH   G TG+I+TK+DGTA+GG L+PIV    +P+ F+GVGEG +DL+PF A 
Sbjct: 237 GLQQAKRFHEAVGLTGVIVTKLDGTAKGGVLVPIVRELGVPIRFIGVGEGPDDLQPFDAG 296

Query: 305 DFSAVITG 312
           +F   + G
Sbjct: 297 EFVEALLG 304


>gi|325694512|gb|EGD36421.1| signal recognition particle protein [Streptococcus sanguinis SK150]
          Length = 524

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|146302707|ref|YP_001197298.1| signal recognition particle-docking protein FtsY [Flavobacterium
           johnsoniae UW101]
 gi|146157125|gb|ABQ07979.1| signal recognition particle-docking protein FtsY [Flavobacterium
           johnsoniae UW101]
          Length = 317

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 186/313 (59%), Gaps = 15/313 (4%)

Query: 11  LSWIRKL---------TKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           +S+ +KL          KG   T       ++  ++ + ++DD V + LE++L+ SD+GV
Sbjct: 1   MSFFKKLFSTEKKETLDKGLEKTKTTFFSKLSKAVAGKSKVDDDVLDNLEEVLVGSDVGV 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVIL 115
               KI+E +  +    K +    +   + + I  +L       +  F      +P+V++
Sbjct: 61  NTTLKIIERIEKRVAEDKYLGTDELNQILRDEIGGLLSETNTGEATEFEIPKDKKPYVLM 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT IGKL+ +   AG KV+L A DTFR+AAIDQL++WADR +   V   +G
Sbjct: 121 VVGVNGVGKTTTIGKLAYQFKKAGYKVVLGAADTFRAAAIDQLQVWADRVNVPIVRQNMG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++A++  + A A+  DV+IIDTAGRLHN   LM  + K+ RV++++   APH VL 
Sbjct: 181 SDPASVAFDTLQSAVAQNADVVIIDTAGRLHNKINLMNELSKVKRVMQKVVADAPHDVLL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGI
Sbjct: 241 VLDGSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGI 300

Query: 296 NDLEPFVAKDFSA 308
            DL+ F   +F  
Sbjct: 301 EDLQVFNKYEFVD 313


>gi|17229251|ref|NP_485799.1| cell division protein [Nostoc sp. PCC 7120]
 gi|17130849|dbj|BAB73458.1| cell division protein [Nostoc sp. PCC 7120]
          Length = 546

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 105/314 (33%), Positives = 178/314 (56%), Gaps = 5/314 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            + ++ E ++W++KL +G   T   +   +  I+    L+     E+E LL+++D+GV  
Sbjct: 231 PEDISIEEITWLKKLRQGLDKTRRNILNQLKAIVGQGPLNQAAVGEIEALLLQADVGVEA 290

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFS---HRPHVILVVG 118
              I+  L  K   +    +  +  + +++  ML  PL       F+      ++ L+ G
Sbjct: 291 TDYIISSLQKKLREEITPPEEAIAYLKQILRDMLDAPLKTSHKASFAPEKDSLNIWLITG 350

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNG GKTT IGK+S     +G + ++ A DTFR+AA++Q+K+W  R+  + + +    +D
Sbjct: 351 VNGAGKTTTIGKISHLAQQSGYRCLIGAADTFRAAAVEQVKVWGKRSGVEVISNPGKNTD 410

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A   AQA+  ++L++DTAGRL N   LM  + K+ R++ +  P A    L VL
Sbjct: 411 PAAVVFDAIAAAQARNTELLLVDTAGRLQNKKNLMDELSKIRRIIDKKAPDAKIESLLVL 470

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+T GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G GEGI D
Sbjct: 471 DSTLGQNGLRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIED 530

Query: 298 LEPFVAKDFSAVIT 311
           L PF + +F   + 
Sbjct: 531 LRPFSSYEFVEALL 544


>gi|284040192|ref|YP_003390122.1| signal recognition particle-docking protein FtsY [Spirosoma
           linguale DSM 74]
 gi|283819485|gb|ADB41323.1| signal recognition particle-docking protein FtsY [Spirosoma
           linguale DSM 74]
          Length = 318

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 120/299 (40%), Positives = 173/299 (57%), Gaps = 7/299 (2%)

Query: 17  LTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T       +   ++    +D+ V +E+E++LI SD+GV    KI+  +  +  
Sbjct: 15  LDKGLEKTKDSFFSKLGRAVVGKSTVDEDVLDEVENVLISSDVGVETTVKIIRRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K V    +   + E I  +L     + ++  F      +P+VI+VVGVNGVGKTT IG
Sbjct: 75  RDKYVGTDELDRILREEIAALLSDNNTVDVADDFALPAGIKPYVIMVVGVNGVGKTTTIG 134

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV+L AGDTFR+AA+DQLK+W +R     +   + +D +A+A++A K+A
Sbjct: 135 KLAAQFHKRGKKVVLGAGDTFRAAAVDQLKLWGERVGVPVISHGMNTDPSAVAFDAVKKA 194

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV+IIDTAGRLH    LM  + K+ RV+++    APH VL VLD +TGQNA  Q 
Sbjct: 195 TEIGADVVIIDTAGRLHTKINLMNELTKIKRVMQKFTSEAPHEVLLVLDGSTGQNAFIQA 254

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             F      T L +TK+DGTA+GG +I I    KIPV ++GVGE I+DL+ F   +F  
Sbjct: 255 TEFTKATEVTALAITKLDGTAKGGVVIGISDQFKIPVKYIGVGEKIDDLQTFNKMEFVD 313


>gi|332976625|gb|EGK13466.1| cell division protein FtsY [Desmospora sp. 8437]
          Length = 331

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 125/311 (40%), Positives = 191/311 (61%), Gaps = 2/311 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            + V+  + S  +K   G + TS  L   +  + S  R+D+ + EELE++LI +D+GV  
Sbjct: 8   KESVSRTTDSVTQKFRSGLSKTSASLVGAMDSVFSRNRIDEELYEELEEVLIGADVGVNT 67

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFS-HRPHVILVVGVN 120
             +IVE+L T+   + +     L  + SE++  +L    +    +       +IL+VGVN
Sbjct: 68  TLEIVEKLRTEVKERKLKDPGELKSLLSEILVGILQGDGEDEGMNLKEDGLSIILIVGVN 127

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+    + G KV+LAAGDTFR+ AI+QL+IW +R   D +  + GSD AA
Sbjct: 128 GVGKTTTIGKLAHHYKEQGRKVVLAAGDTFRAGAIEQLEIWGERVGVDVIRHQAGSDPAA 187

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+  + A+A+  D+L+ DTAGRL N   LM  + K+ RV+ R  P APH  L VLD+T
Sbjct: 188 VIYDGIQAAKARGADILLCDTAGRLQNKVNLMEELKKVHRVISREVPEAPHETLLVLDST 247

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA++Q ++FH     TG+++TKMDGTA+GG  + I    ++PV ++G+GE ++DL+P
Sbjct: 248 TGQNAMQQAKIFHEATRITGIVLTKMDGTAKGGIALAIRQELRVPVKWVGLGEQMDDLQP 307

Query: 301 FVAKDFSAVIT 311
           F  + F   + 
Sbjct: 308 FDGEQFVHALF 318


>gi|324991163|gb|EGC23097.1| signal recognition particle protein [Streptococcus sanguinis SK353]
          Length = 524

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|325854384|ref|ZP_08171583.1| signal recognition particle-docking protein FtsY [Prevotella
           denticola CRIS 18C-A]
 gi|325484178|gb|EGC87112.1| signal recognition particle-docking protein FtsY [Prevotella
           denticola CRIS 18C-A]
          Length = 316

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 182/301 (60%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T   +   +T  ++ + ++DD V ++LE++L+ SD+GV    KI+  +  +  
Sbjct: 15  LDKGLEKTKQNVFSKLTRAVAGKSKVDDEVLDDLEEILVTSDVGVDTTIKIIRRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   +   I  +L   +      +    + RP+VILVVGVNGVGKTT IGK
Sbjct: 75  KDKYVSTSELNGILKSEITALLTENNTGSNDEWTLPENARPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV L A DTFR+AA++Q++IW DR     V  ++G+D A++A++A + A+
Sbjct: 135 LAYQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVVKQQMGADPASVAFDALQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +TGQNA  Q  
Sbjct: 195 ANGADVVIIDTAGRLHNKVGLMNELKKIKDVMKKVVPDAPHEVLLVLDGSTGQNAFEQAR 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F    F   +
Sbjct: 255 QFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFDKVQFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|125717990|ref|YP_001035123.1| SRP54, signal recognition particle GTPase protein [Streptococcus
           sanguinis SK36]
 gi|125497907|gb|ABN44573.1| SRP54, signal recognition particle GTPase protein, putative
           [Streptococcus sanguinis SK36]
          Length = 524

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|172057912|ref|YP_001814372.1| signal recognition particle-docking protein FtsY [Exiguobacterium
           sibiricum 255-15]
 gi|171990433|gb|ACB61355.1| signal recognition particle-docking protein FtsY [Exiguobacterium
           sibiricum 255-15]
          Length = 334

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 134/319 (42%), Positives = 197/319 (61%), Gaps = 3/319 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             ++ + +     K T+G   T   L   + D++   R +D+   EELE++LI++D+GV 
Sbjct: 8   KDRLTTSTQEVTSKFTEGLTKTRDGLANAVNDLVYRFREVDEDFFEELEEVLIQADVGVT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
               +VE+L  +   K+V   + + DV   +   ++   +    D SH  +VIL VGVNG
Sbjct: 68  TTMDLVEKLKVEVKRKNVKDTKEVRDVLVEVVANMLVEEEESELDLSHELNVILFVGVNG 127

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ ++ + G  VMLAAGDTFR+ AIDQL++W +R+    +    GSD AA+
Sbjct: 128 VGKTTTIGKLANRLKNEGKTVMLAAGDTFRAGAIDQLQVWGERSGVPVIRQGEGSDPAAV 187

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A + A+A++VDVLI DTAGRL N   LM  + K+ RV++R  P APH VL  LDATT
Sbjct: 188 IYDAVQAAKARRVDVLICDTAGRLQNKVNLMNELEKVKRVIEREIPGAPHEVLLALDATT 247

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F      +G+++TK+DGTA+GG ++ I     +PV F+G+GE I+DL+PF
Sbjct: 248 GQNAMVQAKAFKQATDVSGIVLTKLDGTAKGGIVLAIKNELDLPVKFVGLGEKIDDLQPF 307

Query: 302 VAKDFSAVITGCLDYGEEK 320
            A+ F   + G  D  EEK
Sbjct: 308 DAEQFVYGLFG--DVFEEK 324


>gi|306825356|ref|ZP_07458696.1| signal recognition particle protein [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304432294|gb|EFM35270.1| signal recognition particle protein [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 523

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISEADVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHDVIDTLNPAQQIIKIVDEELTAILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA   D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QANHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|325479005|gb|EGC82106.1| signal recognition particle protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 445

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 150/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E +  +    +L     D    E+   L+ +D+   V +  V+ +  +   
Sbjct: 3   FEGLSERLQETLGKLTGKGKLSEKDIDAAMREIRLSLLEADVNYKVVKDFVKTIKERSLG 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E +  ++   +   ++  S  PH++++VG+ G GKTT  GKL
Sbjct: 63  QDVMTSLSPGQMVVKIVNEELTALMGKENSKLDFKGS-TPHIVMMVGLQGSGKTTHSGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+ +     ML A D +R AAI+QLK+       +    +   D    A EA   A++
Sbjct: 122 ALKLKNENRNPMLTALDIYRPAAIEQLKVVGKTAGVEVF-DKDKQDPVKTAKEAKDYARS 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  ++ LM  +  +   +       P  +L V+DA TGQ A+   + 
Sbjct: 181 NNHDVIILDTAGRLQIDTDLMDELKNIKEAVN------PDEILLVVDAMTGQEAVNVAKT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG ARGG  + I      P+ F+GVGE + DLEPF     +  I 
Sbjct: 235 FDEYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGVGEKLEDLEPFHPDRMANRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|90414888|ref|ZP_01222853.1| putative signal recognition particle protein [Photobacterium
           profundum 3TCK]
 gi|90324002|gb|EAS40596.1| putative signal recognition particle protein [Photobacterium
           profundum 3TCK]
          Length = 455

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + ++    RL D        E+   L+ +D+ + V ++ V+ +  +   
Sbjct: 2   FENLTERLSRTLKNVSGRGRLTDDNIKDTLREVRMALLEADVALPVVREFVKRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  +      P VIL+ G+ G GKTT +GKL
Sbjct: 62  SEVSKSLTPGQEFIKIVQAELESVMGESNEALDLAC-QPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +       V++ + D +R AAI QL+  A+    DF  S        +   A    +
Sbjct: 121 GKVLKEREKKNVLVVSADVYRPAAIKQLETLANDIGIDFFPSSAEQKPVDIVSAAVAHGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRLH + ++M  I  + +         P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVVIVDTAGRLHVDDVMMDEIKDIHKAAN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPNRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|324992911|gb|EGC24831.1| signal recognition particle protein [Streptococcus sanguinis SK405]
          Length = 524

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISENDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKAPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|288553090|ref|YP_003425025.1| signal recognition particle protein [Bacillus pseudofirmus OF4]
 gi|288544250|gb|ADC48133.1| signal recognition particle [Bacillus pseudofirmus OF4]
          Length = 452

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +T I    ++ +     +  E+   L+ +D+   V ++ +  +  K  
Sbjct: 2   AFEGLAERLQDTLTKIRGKGKVSEQDVKDMMREVRLALLEADVNFKVVKQFIASVKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V+E +  ++           +  P V+++VG+ G GKTT   K
Sbjct: 62  GQEVMKSLTPGQMVIKVVNEELTALMGGEQSKIAV-ANKPPTVVMMVGLQGAGKTTTTAK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +        ML A D +R AAI QL+    + +              +A +A  +A
Sbjct: 121 LANHLRKKQNRTPMLVAADIYRPAAIKQLETLGKQLNMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + ++  + K      P  +L V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMGELQEVKEIAK------PDEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  I +      P+ F G+GE I+ LEPF     ++ 
Sbjct: 235 ESFNEQLDVTGVVLTKLDGDTRGGAAISVKAVTNTPIKFAGMGEKIDQLEPFYPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|224540007|ref|ZP_03680546.1| hypothetical protein BACCELL_04919 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518374|gb|EEF87479.1| hypothetical protein BACCELL_04919 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 319

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 183/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I  +++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   SFFSKDKKETLDKGLSKTKESVFGKIARVVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I++ +  +  ++  ++ Q +   + + I  +L   +      F      +P+VI+VVGVN
Sbjct: 65  IIQRIEKRAASEKYMNAQELNTILRDEIAALLTENNSDDVDDFEAPIEKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW  R     +  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLDIWGSRVGVPVIKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY+    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +
Sbjct: 185 VAYDTLNSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FRKKEFVDSLFG 316


>gi|238752941|ref|ZP_04614403.1| Signal recognition particle protein [Yersinia rohdei ATCC 43380]
 gi|238708849|gb|EEQ01105.1| Signal recognition particle protein [Yersinia rohdei ATCC 43380]
          Length = 453

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFISRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELIAAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K + + + D +R AAI QL+  A +  ADF  S+       +   A +QA+
Sbjct: 121 AKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQQVGADFFPSDAQEKPIDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|229822802|ref|ZP_04448872.1| hypothetical protein GCWU000282_00091 [Catonella morbi ATCC 51271]
 gi|229787615|gb|EEP23729.1| hypothetical protein GCWU000282_00091 [Catonella morbi ATCC 51271]
          Length = 491

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  I+ I +   + +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLSERLQNAISGIGAGGTISEADLRQMMREIRLALLEADVNFQVVKSFVKTVNERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++     P N+  +  P +I++ G+ G GKTT +GK
Sbjct: 62  GSDVLASLSPAQQVVKIVDEELTALMGGEQVPLNF-ATQPPTIIMMAGLQGAGKTTTVGK 120

Query: 131 LSKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K +   G K  L  AGD +R AAI QL+    +   D            +A +A  QA
Sbjct: 121 LAKYVQAQGKKRPLLVAGDIYRPAAIAQLQTIGQQLGFDVFSLGSDVSPVEIARQAVAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV++IDTAGRLH +  LM  + ++   +       PH +L  +DA TGQ+A+   
Sbjct: 181 RIQGNDVVLIDTAGRLHVDETLMEELRQIKAAVN------PHEILLTVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG  RGG  + I      P+ F G GE ++ LEPF     S+ 
Sbjct: 235 KAFNDSLDITGVIITKLDGDTRGGAALSIRSIIDRPIKFTGQGEKLDALEPFYPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|332184708|gb|AEE26962.1| Signal recognition particle receptor protein FtsY (alpha subunit)
           [Francisella cf. novicida 3523]
          Length = 331

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 191/313 (61%), Gaps = 2/313 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVA 63
           +          +L  G + T+ K   G++ I+   + +D+ + E++E  L+ +D+GV   
Sbjct: 19  QEQDNKKGLFSRLQAGLSKTANKFGSGLSTILMGQKVVDEELLEDIEMQLLTADVGVEAT 78

Query: 64  QKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +IV  L  +    ++     L   + E + ++++P  KP   D    P VILVVGVNGV
Sbjct: 79  DEIVTYLRDQVARNELQTADKLNQIIKEKLIEIILPCEKPLEIDTQKSPFVILVVGVNGV 138

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G  V+LAAGDTFR+AA++QL+ W DR +   V    G+D+A++ 
Sbjct: 139 GKTTTIGKLTKKLQSQGKSVILAAGDTFRAAAVEQLREWGDRNNTQVVYQHEGADSASVI 198

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A++K + V+I DTAGRLHN   LM  + K+++V+K+ D  APH ++ V+DATTG
Sbjct: 199 YDAISSAKSKGIGVVIADTAGRLHNKDNLMQELKKVVKVIKKTDGTAPHEIMLVVDATTG 258

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            NAL Q E F+ +   TG+ +TK+DGTA+GG +  I     +P+ F+GVGE I+DL+ F 
Sbjct: 259 GNALSQAEAFNQIVNLTGITITKLDGTAKGGIVFSIAKKLGLPLRFIGVGEKIDDLQIFN 318

Query: 303 AKDFSAVITGCLD 315
           A+DF+  +    D
Sbjct: 319 ARDFTTALFNSND 331


>gi|227878849|ref|ZP_03996756.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus crispatus
           JV-V01]
 gi|227861597|gb|EEJ69209.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus crispatus
           JV-V01]
          Length = 476

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S ++++ + ++    ++ +        E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFENLSERIQKALKNLTGKGKVSEEDINKASREIRLALLEADVNFKVVKDFIKTIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+V+  V+E + KM+   + P N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS-KHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      + +L AGD +R AA+DQLK   D+        +   D A +  +   +A
Sbjct: 121 LAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGDQLKVPVYSEDGEKDVAKIVQDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  K D ++IDTAGRL  +  LM  + ++ +V        P ++L V+DA TGQ A    
Sbjct: 181 EKNKNDYVLIDTAGRLEIDEPLMEELERVKKV------AHPDNILLVVDAMTGQAATDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F G GE ++DL+ F     ++ 
Sbjct: 235 KGFDERLDITGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|323351581|ref|ZP_08087235.1| signal recognition particle protein [Streptococcus sanguinis VMC66]
 gi|322122067|gb|EFX93793.1| signal recognition particle protein [Streptococcus sanguinis VMC66]
          Length = 524

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|77165724|ref|YP_344249.1| Signal recognition particle protein [Nitrosococcus oceani ATCC
           19707]
 gi|254434970|ref|ZP_05048478.1| signal recognition particle protein [Nitrosococcus oceani AFC27]
 gi|76884038|gb|ABA58719.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Nitrosococcus oceani ATCC 19707]
 gi|207091303|gb|EDZ68574.1| signal recognition particle protein [Nitrosococcus oceani AFC27]
          Length = 452

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  +    RL  D +++ L +    L+ +D+ + V +  V ++  +   
Sbjct: 2   FDNLTERLGHTLKRLRGQARLTQDNIKDTLREVRVALLEADVALPVVRDFVAKVRERAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V E +  ++   ++    D    P VIL+ G+ G GKTT + KL
Sbjct: 62  QEVLRSLTPGQAFIKIVHEELMAVMGEAAEGLKLDV-RPPAVILMAGLQGSGKTTTVAKL 120

Query: 132 SKKMSDAGLKVMLAA-GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K +L    D +R AAI QL+  A+    +F  S+   D  A+A  A +QA+
Sbjct: 121 ARWLKEQQKKSVLVTSADVYRPAAIQQLETLANEVGVEFYPSKPTEDPVAIAQGAIQQAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVLIIDTAGRLH + ++MA I ++   +K      P   L V+D+ TGQ+A    +
Sbjct: 181 TQVLDVLIIDTAGRLHVDDLMMAEIKRLHDAVK------PVETLFVVDSMTGQDAANTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LE F     ++ I
Sbjct: 235 AFNDSLALTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTAALELFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|290580502|ref|YP_003484894.1| signal recognition particle protein subunit [Streptococcus mutans
           NN2025]
 gi|254997401|dbj|BAH88002.1| signal recognition particle protein subunit [Streptococcus mutans
           NN2025]
          Length = 516

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++   R+L +     V +E+   L+ +D+ + V ++ ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E +  +L   +       S  P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +   QA
Sbjct: 121 LANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVEIVSQGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 KENRNDYVLIDTAGRLQIDEKLMTELRDIKALAN------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|328946321|gb|EGG40465.1| signal recognition particle protein [Streptococcus sanguinis
           SK1087]
          Length = 524

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|325696493|gb|EGD38383.1| signal recognition particle protein [Streptococcus sanguinis SK160]
          Length = 524

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEDNARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|325689716|gb|EGD31720.1| signal recognition particle protein [Streptococcus sanguinis SK115]
          Length = 524

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|319939112|ref|ZP_08013476.1| signal recognition particle GTPase [Streptococcus anginosus
           1_2_62CV]
 gi|319812162|gb|EFW08428.1| signal recognition particle GTPase [Streptococcus anginosus
           1_2_62CV]
          Length = 516

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+    G + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEEGARPLMIAADIYRPAAIDQLKTLGQQIDVPVFSLGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|295693164|ref|YP_003601774.1| signal recognition particle protein ffh [Lactobacillus crispatus
           ST1]
 gi|295031270|emb|CBL50749.1| Signal recognition particle protein Ffh [Lactobacillus crispatus
           ST1]
          Length = 476

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S ++++ + ++    ++ +        E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFENLSERIQKALKNLTGKGKVSEEDINRASREIRLALLEADVNFKVVKDFIKTIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+V+  V+E + KM+   + P N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS-KHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      + +L AGD +R AA+DQLK   D+        +   D A +  +   +A
Sbjct: 121 LAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGDQLKVPVYSEDGEKDVAKIVQDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  K D ++IDTAGRL  +  LM  + ++ +V        P ++L V+DA TGQ A    
Sbjct: 181 EKNKNDYVLIDTAGRLEIDEPLMEELERVKKV------AHPDNILLVVDAMTGQAATDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F G GE ++DL+ F     ++ 
Sbjct: 235 KGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|294634744|ref|ZP_06713274.1| signal recognition particle protein [Edwardsiella tarda ATCC 23685]
 gi|291091843|gb|EFE24404.1| signal recognition particle protein [Edwardsiella tarda ATCC 23685]
          Length = 453

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FENLSDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V + + + +   +   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVNKSLTPGQEFVKIVQDELTRAMGEANTELNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A     DF  S++      +   A   A+
Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVGVDFFPSDVQERPLDIVQRALTHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A     
Sbjct: 181 QKFYDVLIVDTAGRLHVDEAMMEEIKQIHAAIT------PVETLFVVDAMTGQDAANTAS 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNQALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|322387559|ref|ZP_08061168.1| signal recognition particle protein [Streptococcus infantis ATCC
           700779]
 gi|321141426|gb|EFX36922.1| signal recognition particle protein [Streptococcus infantis ATCC
           700779]
          Length = 521

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFENLTERLQNVFKNLRKKGKITESDIQEATKEIRLALLEADVALPVVKDFIKKIRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E + ++L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVNEELTEVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEEDARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDELLMNELRDVKTL------AQPNEILLVIDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     ++ 
Sbjct: 235 REFNAQLEVTGIILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|306831354|ref|ZP_07464514.1| signal recognition particle protein [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304426590|gb|EFM29702.1| signal recognition particle protein [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 521

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 144/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q+++  V+E + ++L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQIVKIVNEELTEILGSETAELEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  D   + ++ A D +R AAIDQLK    + +           A  +      QA
Sbjct: 121 LANKLIKDENARPLMIAADIYRPAAIDQLKTLGSQINVPVFDMGTDHSAVEIVTNGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +IIDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 KENHNDYVIIDTAGRLQIDEKLMEELRDVKALAN------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 DEFNKQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|327470046|gb|EGF15510.1| signal recognition particle protein [Streptococcus sanguinis SK330]
          Length = 524

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKSLAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|307264842|ref|ZP_07546404.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920100|gb|EFN50312.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 318

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 197/312 (63%), Gaps = 5/312 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGV 60
             +   +E   + +K+ +G   T   L   I  I++  R++D+ + EELE++LI +DIG+
Sbjct: 9   KKESETAEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGI 68

Query: 61  AVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +   KI+E +  K   + +    ++   ++E ++++L    +PF       P VILVVGV
Sbjct: 69  STTSKIIEGIRQKAKERKIYDASQIKKLLAEEVYEILQKDVEPFTL---TSPMVILVVGV 125

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+      G KV+LAAGDTFR+AAIDQL+IWA+R +   +  + GSD A
Sbjct: 126 NGVGKTTTIGKLAYLYKKEGKKVILAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGSDPA 185

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  + ++A+ +D+LI DTAGRLHN   LM  + K+ +V+ R  P A      VLDA
Sbjct: 186 SVIFDGIQASKARGIDILICDTAGRLHNKKNLMEELRKIRKVIDREYPEARVETFLVLDA 245

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL+Q ++F  V+  TG+++TK+DGTA+GG ++ I     +P+ ++G+GEGI DL+
Sbjct: 246 TTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGIGEGIEDLQ 305

Query: 300 PFVAKDFSAVIT 311
            F AK F + I 
Sbjct: 306 AFDAKSFVSAIF 317


>gi|302344587|ref|YP_003809116.1| signal recognition particle protein [Desulfarculus baarsii DSM
           2075]
 gi|301641200|gb|ADK86522.1| signal recognition particle protein [Desulfarculus baarsii DSM
           2075]
          Length = 445

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L E    +    +L +        E+   L+ +D+   VA+  V  +  +   
Sbjct: 2   FDNLSDRLAETFKRLKGHGKLSEANIADALREVRLALLEADVNYKVAKDFVAGVRERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V E +  ++   ++  N      P V+++VG+ G GKTT  GKL
Sbjct: 62  QEVMKSLTPAQQVIKIVREELSSLMGGQAEGLNL-IGRPPQVLMMVGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ ++  G K +L   D  R AAI+QLK    +       S+ G D   +   A   A  
Sbjct: 121 ARMLAGMGKKPLLVPADVQRPAAIEQLKKLGAQLGVPVHDSDPGGDPVDICVRALGTASR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D LI+DTAGRLH +  LMA    + R+ ++L P     +L V DA TGQ+A+   E 
Sbjct: 181 LGCDALILDTAGRLHIDEPLMAQ---LERIKQKLQPG---EILLVADAMTGQDAVNVAEA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G +G+++TK++G ARGG  + I     +P+  +GVGE ++ LEPF     +  I 
Sbjct: 235 FHQRLGLSGVVLTKVEGDARGGAALSIRAVTGVPIKLVGVGEKLDALEPFHPDRMAGRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|150005788|ref|YP_001300532.1| recognition particle-docking protein FtsY [Bacteroides vulgatus
           ATCC 8482]
 gi|254882030|ref|ZP_05254740.1| recognition particle-docking protein FtsY [Bacteroides sp.
           4_3_47FAA]
 gi|319640962|ref|ZP_07995670.1| hypothetical protein HMPREF9011_01267 [Bacteroides sp. 3_1_40A]
 gi|149934212|gb|ABR40910.1| recognition particle-docking protein FtsY [Bacteroides vulgatus
           ATCC 8482]
 gi|254834823|gb|EET15132.1| recognition particle-docking protein FtsY [Bacteroides sp.
           4_3_47FAA]
 gi|317387407|gb|EFV68278.1| hypothetical protein HMPREF9011_01267 [Bacteroides sp. 3_1_40A]
          Length = 319

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 181/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           ++  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   NFFSKEKKETLDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVN 120
           I++ +  +    K V+ Q +   + E I  +L       S  F      +P+VI+VVGVN
Sbjct: 65  IIKRIEERVAKDKYVNTQELNKILREEIAALLTENNTVDSDDFTVPEGKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++GSD A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKTVYLGAADTFRAAAVEQLDIWGERVGVPVIKQKMGSDPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++   APH VL VLD +
Sbjct: 185 VAFDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVADAPHEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEGI D++ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISEQFKIPVKYIGLGEGIEDMQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FRKKEFVDSLFG 316


>gi|320546729|ref|ZP_08041040.1| signal recognition particle protein [Streptococcus equinus ATCC
           9812]
 gi|320448608|gb|EFW89340.1| signal recognition particle protein [Streptococcus equinus ATCC
           9812]
          Length = 521

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q+++  V+E + ++L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQIVKIVNEELTEILGSETAELEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + M+ A D +R AAIDQLK    + +           A  +      QA
Sbjct: 121 LANKLIKEEKARPMMIAADIYRPAAIDQLKTLGSQINVPVFDMGTDHSAVEIVTHGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +IIDTAGRL  +  LM  +  +  + K      P+ +L V+D+  GQ A    
Sbjct: 181 KENHNDYVIIDTAGRLQIDEALMQELRDVKALAK------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 DEFNKQLDITGIVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|270264054|ref|ZP_06192322.1| hypothetical protein SOD_f02720 [Serratia odorifera 4Rx13]
 gi|270042247|gb|EFA15343.1| hypothetical protein SOD_f02720 [Serratia odorifera 4Rx13]
          Length = 474

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 23  FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVG 82

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 83  HEVNKSLTPGQEFVKIVKSELIAAMGEVNTELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 141

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A+    DF  S++      +   A +QA+
Sbjct: 142 GKFLKEKQKKKVLVVSADVYRPAAIRQLETLAEGVGIDFFPSDVKEKPIDIVNRALQQAK 201

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 202 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 255

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 256 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 315

Query: 311 TGCLD 315
            G  D
Sbjct: 316 LGMGD 320


>gi|306829387|ref|ZP_07462577.1| signal recognition particle protein [Streptococcus mitis ATCC 6249]
 gi|304428473|gb|EFM31563.1| signal recognition particle protein [Streptococcus mitis ATCC 6249]
          Length = 523

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISEADVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA   D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QANHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVIDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|224138482|ref|XP_002322825.1| predicted protein [Populus trichocarpa]
 gi|222867455|gb|EEF04586.1| predicted protein [Populus trichocarpa]
          Length = 576

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 93/311 (29%), Positives = 152/311 (48%), Gaps = 15/311 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KLK    ++++   + + +R+ +   L+ +D+ + V ++ V+ 
Sbjct: 86  KAEMFGQLTSGLESAWNKLKG--EEVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVQS 142

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +     +       Q+++  V + + K++        +  S  P VIL+ G+ GVGK
Sbjct: 143 VSDQAVGVGLVRGVKPDQQLVKIVHDELVKLMGGEVSELVFAKSA-PTVILLAGLQGVGK 201

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TTV  KL+  +   G   ML AGD +R AAIDQL I  ++              + +A +
Sbjct: 202 TTVCAKLANYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTEGTDVKPSEIARK 261

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+ K +DV+I+DTAGRL  +  +M  +  +  +L       P  VL V+DA TGQ 
Sbjct: 262 GLSEAKKKNIDVVIVDTAGRLQIDKGMMDELKDVKLILN------PTEVLLVVDAMTGQE 315

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF   
Sbjct: 316 AAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPN 375

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 376 RMAGRILGMGD 386


>gi|255658401|ref|ZP_05403810.1| signal recognition particle protein [Mitsuokella multacida DSM
           20544]
 gi|260849734|gb|EEX69741.1| signal recognition particle protein [Mitsuokella multacida DSM
           20544]
          Length = 457

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 152/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+     +    +L +D V E   E+   L+ +D+   V ++ ++ +  +   
Sbjct: 3   FESLSDRLQATFKKLRGHGKLTEDDVNEAMREVRMALLEADVNFKVVKQFIKTVKERAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +D+       Q V+  V E + K++       N      P +I++VG+ G GKTT  GKL
Sbjct: 63  QDILETLTPAQVVIKIVDEELTKLMGDTQSRINMS-PKPPTIIMMVGLQGAGKTTSAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              +   G + +L A D +R AAI QL++   +        E G+DA  +A  +   +Q+
Sbjct: 122 GLALKKQGKRPLLVAADIYRPAAITQLQVLGKQLDIPVFSMEQGTDAVTIAKNSIDYSQS 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRL  +  LM  +  +   +       PH +L V+DA TGQ ++   + 
Sbjct: 182 HACDVVIIDTAGRLQIDEKLMKELCDIKSEVH------PHEILLVVDAMTGQESVNVAQS 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G++MTK+DG ARGG  + +     +P+ F+G+GE +  LEPF     ++ I 
Sbjct: 236 FNDALGLDGVVMTKLDGDARGGAALSVKAVTGVPIKFIGLGEKLEPLEPFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|254481747|ref|ZP_05094990.1| signal recognition particle protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037876|gb|EEB78540.1| signal recognition particle protein [marine gamma proteobacterium
           HTCC2148]
          Length = 468

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  I     L +        E+   L+ +D+ + V ++ VE +  +   
Sbjct: 2   FQSLSDRLSNSLRSISGKATLTEDNIQETLREVRMALLEADVALPVVKQFVESVKQRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  L  V   +  ++   ++  N   +  P VIL+ G+ G GKTT + KL
Sbjct: 62  QEVMKSLSPGQVFLKIVQSELESVMGSANEGLNL-ATQPPAVILMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV + + D +R AAI QL+  A     DF  SE       +A  A   A+
Sbjct: 121 AKLLKERDKKKVTVVSADVYRPAAIKQLETLAAEVGVDFFPSESSEKPVDIATAALSHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRL  +  +MA I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 KSFSDVLIVDTAGRLAVDEDMMAEIAQLHASVN------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+D   RGG  + +      P+ FLGVGE I  L+PF     ++ I
Sbjct: 235 AFGETLPLTGVILTKVDADTRGGAALSVRSITGKPIKFLGVGEKIAALDPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|307709396|ref|ZP_07645854.1| signal recognition particle protein [Streptococcus mitis SK564]
 gi|307619979|gb|EFN99097.1| signal recognition particle protein [Streptococcus mitis SK564]
          Length = 523

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVDIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA   D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QANHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|303327980|ref|ZP_07358419.1| signal recognition particle protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861806|gb|EFL84741.1| signal recognition particle protein [Desulfovibrio sp. 3_1_syn3]
          Length = 506

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L           +L +        E+   L+ +D+   V +  VE +  K   
Sbjct: 2   FESLSDRLSGVFRSFGGRGQLTEENVQAGLREVRLALLEADVNFKVVKDFVESVREKCLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++        Q+V+  V + +  +L   +   N      P VI++VG+ G GKTT  GK+
Sbjct: 62  QETLKGVSPAQQVVKIVHDELVSLLGGETTGLNLQGRE-PAVIMLVGLQGSGKTTSAGKI 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +    ++  L   D +R AAIDQL + A +       S        +A  A  QA+ 
Sbjct: 121 ANLLRRQKMRPYLVPADVYRPAAIDQLTVLAKQLDMPCFPSTTEMKPVDIATAALAQARE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++  VL++DTAGRLH +  LM  +  +   ++      P  +L V DA TGQ+A+   E 
Sbjct: 181 EQATVLLLDTAGRLHVDEPLMEELSAIKAAVQ------PQEILFVADAMTGQDAVTVAEA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+++TKMDG ARGG  + I      PV F+GVGE ++++E F     +  I 
Sbjct: 235 FNERLGLTGVVLTKMDGDARGGAALSIRSVTGAPVKFVGVGEKLSEMEVFHPDRIAGRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|319779122|ref|YP_004130035.1| cell division protein [Taylorella equigenitalis MCE9]
 gi|317109146|gb|ADU91892.1| cell division protein [Taylorella equigenitalis MCE9]
          Length = 521

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 121/311 (38%), Positives = 185/311 (59%), Gaps = 13/311 (4%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            SE   W  +L KG + +       +  I    R+D+ + EELE+ L+ +D GV   QKI
Sbjct: 219 PSEKKGWFSRLKKGLSRS------NLGSIFVGTRIDEELFEELENSLLMADAGVIATQKI 272

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + EL      + +     +   ++++I + L PL K F+     R +V+++ GVNG GKT
Sbjct: 273 ISELRQAVKKQHLEDADQVKHALTQIIAQHLKPLEKIFDI-HEDRTNVVMIAGVNGAGKT 331

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+      G  ++LAAGDTFR+AA +QL+ W  + +   + S+ G D A++A++A
Sbjct: 332 TSIGKLAYHFQAHGASLLLAAGDTFRAAAREQLQQWGLKNNVQVI-SQQGGDPASVAFDA 390

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                AKK  V++IDTAGRL   + LM  + K+ RV+ + +  APH VL V+D  TGQNA
Sbjct: 391 VNSGIAKKTTVVMIDTAGRLPTQTHLMEELKKIKRVITKAESSAPHEVLLVVDGNTGQNA 450

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV----THKIPVYFLGVGEGINDLEPF 301
           L Q++ F    G TGL++TK+DGTA+GG L+ +         +PVY++GVGE + DL+PF
Sbjct: 451 LAQIKAFDEAIGLTGLLVTKLDGTAKGGVLVAMASGVQGVRTVPVYWIGVGESLEDLQPF 510

Query: 302 VAKDFSAVITG 312
           VA++F+  + G
Sbjct: 511 VAEEFAQALVG 521


>gi|300114672|ref|YP_003761247.1| signal recognition particle protein [Nitrosococcus watsonii C-113]
 gi|299540609|gb|ADJ28926.1| signal recognition particle protein [Nitrosococcus watsonii C-113]
          Length = 452

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  +    RL  D +++ L +    L+ +D+ + V +  V ++  +   
Sbjct: 2   FDNLTERLGHTLKRLRGQARLTQDNIKDTLREVRVALLEADVALPVVRDFVAKVRERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V E +  ++   ++    D    P VIL+ G+ G GKTT + KL
Sbjct: 62  QEVLRSLTPGQAFIKIVHEELMAVMGEAAEGLKLDV-RPPAVILMAGLQGSGKTTTVAKL 120

Query: 132 SKKMSDAGLKVMLAA-GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K +L    D +R AAI QL+  A      F  S+   D  A+A  A +QA+
Sbjct: 121 ARWLKEQQKKSVLVTSADVYRPAAIQQLETLASEVGVAFYPSKPTQDPVAIARGAIQQAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVLIIDTAGRLH + ++MA I ++    +      P   L V+D+ TGQ+A    +
Sbjct: 181 TQVLDVLIIDTAGRLHVDDLMMAEIKRLHEAAE------PVETLFVVDSMTGQDAANTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LE F     ++ I
Sbjct: 235 AFNDSLALTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTAALELFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|294670244|ref|ZP_06735137.1| signal recognition particle protein [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307981|gb|EFE49224.1| signal recognition particle protein [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 455

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 150/306 (49%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +      +I     L++        E+   L+ +D+ + V +  +  +  K   
Sbjct: 2   LDNLTNRFYSVFKNIRGVATLNEENIKPALREVRLALLEADVALPVVRDFINNVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++++      Q  +  V++ + +++   +   +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEINDNLTAEQAFITIVNQALIELMGKENSKLDLAVA-PPAVVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +K +   D   K+++ + D +R AAI+QL++ A++   DF  S+       +A  A   A
Sbjct: 121 AKLLKTVDKKKKILVVSADVYRPAAIEQLRLLAEQVQVDFFPSDTTQKPVDIALAALNHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   
Sbjct: 181 KRGFYDVLMVDTAGRLAIDQEMMDEIKALHAAVN------PVETLFVVDAMLGQDAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TKMDG +RGG  + +      P+ F+GVGE I+ LE F     ++ 
Sbjct: 235 QAFNEALPLTGVVLTKMDGDSRGGAALSVRQVTGKPIKFIGVGEKIDGLEAFHPDRIASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|213963637|ref|ZP_03391889.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           sputigena Capno]
 gi|213953765|gb|EEB65095.1| signal recognition particle-docking protein FtsY [Capnocytophaga
           sputigena Capno]
          Length = 320

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 123/298 (41%), Positives = 181/298 (60%), Gaps = 6/298 (2%)

Query: 17  LTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   +     + +   ++   ++DD V ++LE++LI SD+GV    KI++ +  +  
Sbjct: 18  LDKGLEKSKNSFFDRLGKAVMGKSKVDDEVLDDLEEVLIASDVGVNTTLKIIDRIEARVA 77

Query: 75  YAKDVSVQRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K +    +   + E I  +L       +  F      +P+V++VVGVNG GKTT IGK
Sbjct: 78  KDKYLGTSELNTILREEIAGLLSETHTGEATDFVLPADKKPYVMMVVGVNGAGKTTTIGK 137

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ + +  GLKV+L A DTFR+AAIDQL++WADRT    +  ++GSD A++AY+    A 
Sbjct: 138 LASQFTKKGLKVVLGAADTFRAAAIDQLQVWADRTGVPMIKQQLGSDPASVAYDTLSSAV 197

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+IIDTAGRLHN   LM  + K+ RV++++ P APH VL VLD +TGQNA  Q +
Sbjct: 198 KQNADVVIIDTAGRLHNKINLMNELSKIKRVMQKVLPDAPHEVLLVLDGSTGQNAFEQAK 257

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            F      T L +TK+DGTA+GG +I I    +IPV ++GVGEGI+DL+ F   +F  
Sbjct: 258 EFTKATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIDDLQIFNKYEFVD 315


>gi|322374427|ref|ZP_08048941.1| signal recognition particle protein [Streptococcus sp. C300]
 gi|331266505|ref|YP_004326135.1| signal recognition particle protein [Streptococcus oralis Uo5]
 gi|321279927|gb|EFX56966.1| signal recognition particle protein [Streptococcus sp. C300]
 gi|326683177|emb|CBZ00795.1| signal recognition particle protein [Streptococcus oralis Uo5]
          Length = 523

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISEADVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA   D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QANHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVIDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|126740023|ref|ZP_01755713.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           SK209-2-6]
 gi|126718842|gb|EBA15554.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           SK209-2-6]
          Length = 378

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 125/276 (45%), Positives = 191/276 (69%), Gaps = 1/276 (0%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LDD + E+LE+LLI +D+GV  A ++   +   R  K +S + +   ++  + +++ 
Sbjct: 101 RRVLDDDMLEQLEELLIAADMGVDTALRVTSNMAEGRLGKKLSAREIKELLAAEVARVME 160

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            ++KP    ++HRP V+LVVGVNG GKTT IGKL+ +   AG KV++AAGDTFR+AA++Q
Sbjct: 161 TVAKPMPI-YAHRPQVVLVVGVNGSGKTTTIGKLASQFKGAGKKVVIAAGDTFRAAAVEQ 219

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L++W +R     + +  GSD A+LA++A  +AQ +  D+L+IDTAGRL N + LM  + K
Sbjct: 220 LQVWGERAGVPVLTAPEGSDPASLAFDAMTKAQEEGADLLMIDTAGRLQNRADLMEELAK 279

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++RV+++ D  APH+ L VLDATTGQNAL QVE F  ++  +GL+MTK+DGTA+GG L+ 
Sbjct: 280 IVRVIRKKDETAPHNTLLVLDATTGQNALSQVETFRKISDVSGLVMTKLDGTAKGGVLVA 339

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +     +P++ +GVGE I+DL PF  ++F+A +TG 
Sbjct: 340 LADKFGLPIHAIGVGEQIDDLAPFDPEEFAAALTGL 375


>gi|291559017|emb|CBL37817.1| signal recognition particle-docking protein FtsY
           [butyrate-producing bacterium SSC/2]
          Length = 311

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 179/315 (56%), Gaps = 7/315 (2%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
           SE   + ++L +G + T   +      I S    +D+   EELE++LI SD+G+     I
Sbjct: 2   SEKKGFFKRLAQGLSKTRDNIASSFDSIFSGFSGIDEDFYEELEEILIMSDMGIDTTMNI 61

Query: 67  VEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E+L  K     +   +     + + I   +    +   +DF  +  V+LV+GVNGVGKT
Sbjct: 62  IEDLKKKVKENKIKEPEECRQLLIDSIKDQMR--LEDSAYDFIDKKSVVLVIGVNGVGKT 119

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL+  +   G KV+LAA DTFR+ AI+QLK W++R   D +    G+D AA+ Y+A
Sbjct: 120 TSVGKLAASLKGQGKKVLLAAADTFRAGAIEQLKEWSNRAGVDIISQAEGADPAAVVYDA 179

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+ VDVL+ DTAGRLHN   LM  + K+ R++++    A    L VLD TTGQNA
Sbjct: 180 VAAAKARDVDVLLCDTAGRLHNKKNLMNELSKINRIIQKEYSEAYLETLIVLDGTTGQNA 239

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F      +G+I+TK+DGTA+GG  I I     IPV ++G+GE ++DL+ F    
Sbjct: 240 MAQAKQFKEATDISGIILTKLDGTAKGGIAIAIQSELGIPVKYIGIGEQVDDLQRFDPDM 299

Query: 306 FSAVITGCLDYGEEK 320
           F   +    + GEE 
Sbjct: 300 FVNAL---FEKGEEN 311


>gi|238756459|ref|ZP_04617766.1| Signal recognition particle protein [Yersinia ruckeri ATCC 29473]
 gi|238705308|gb|EEP97718.1| Signal recognition particle protein [Yersinia ruckeri ATCC 29473]
          Length = 453

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELIGAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A +   DF  S++      +   A +QA+
Sbjct: 121 GKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFFPSDVQEKPIDIVSRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFFDVLIVDTAGRLHVDEAMMDEIKQIHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|317498506|ref|ZP_07956800.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316894199|gb|EFV16387.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 313

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 179/315 (56%), Gaps = 7/315 (2%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
           SE   + ++L +G + T   +      I S    +D+   EELE++LI SD+G+     I
Sbjct: 4   SEKKGFFKRLAQGLSKTRDNIASSFDSIFSGFSGIDEDFYEELEEILIMSDMGIDTTMNI 63

Query: 67  VEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E+L  K     +   +     + + I   +    +   +DF  +  V+LV+GVNGVGKT
Sbjct: 64  IEDLKKKVKENKIKEPEECRQLLIDSIKDQMR--LEDSAYDFIDKKSVVLVIGVNGVGKT 121

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL+  +   G KV+LAA DTFR+ AI+QLK W++R   D +    G+D AA+ Y+A
Sbjct: 122 TSVGKLAASLKGQGKKVLLAAADTFRAGAIEQLKEWSNRAGVDIISQAEGADPAAVVYDA 181

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+ VDVL+ DTAGRLHN   LM  + K+ R++++    A    L VLD TTGQNA
Sbjct: 182 VAAAKARDVDVLLCDTAGRLHNKKNLMNELSKINRIIQKEYSEAYLETLIVLDGTTGQNA 241

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F      +G+I+TK+DGTA+GG  I I     IPV ++G+GE ++DL+ F    
Sbjct: 242 MAQAKQFKEATDISGIILTKLDGTAKGGIAIAIQSELGIPVKYIGIGEQVDDLQRFDPDM 301

Query: 306 FSAVITGCLDYGEEK 320
           F   +    + GEE 
Sbjct: 302 FVNAL---FEKGEEN 313


>gi|160880541|ref|YP_001559509.1| signal recognition particle protein [Clostridium phytofermentans
           ISDg]
 gi|160429207|gb|ABX42770.1| signal recognition particle protein [Clostridium phytofermentans
           ISDg]
          Length = 454

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++    +L +        E++  L+ +D+   V +  V  +  +  
Sbjct: 2   AFESLSEKLQNVFKNLRGKGKLSEADVKLALREVKMALLEADVNFKVVKNFVNSVQERAI 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V+E + K++   +            VI++ G+ G GKTT I K
Sbjct: 62  GQEVMTSLTPGQMVVKIVNEEMVKLMGDETTELTLKPGSEITVIMMCGLQGAGKTTTIAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G K +L A D +R AA+DQL+I  ++                +A  A + A 
Sbjct: 122 LAGKFKAKGKKPLLVACDIYRPAAVDQLQINGEKQGVPVFAMGTNHKPVNIAKAAMEHAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++IIDTAGRLH +  +M  + ++   +          V+  +DA TGQ+A+   E
Sbjct: 182 KNGNNIVIIDTAGRLHIDEDMMDELIEIKENIH------IDHVILTVDAMTGQDAVNVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 TFNEKIGITGVILTKLDGDTRGGAALSIRAVTGKPILYIGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|307704985|ref|ZP_07641872.1| signal recognition particle protein [Streptococcus mitis SK597]
 gi|307621436|gb|EFO00486.1| signal recognition particle protein [Streptococcus mitis SK597]
          Length = 523

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA   D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QANHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|262282312|ref|ZP_06060080.1| signal recognition particle protein [Streptococcus sp. 2_1_36FAA]
 gi|262261603|gb|EEY80301.1| signal recognition particle protein [Streptococcus sp. 2_1_36FAA]
          Length = 524

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V ++ ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKEFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KVNHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|317493964|ref|ZP_07952381.1| signal recognition particle protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918291|gb|EFV39633.1| signal recognition particle protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 453

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FENLSDRLSRSLRNISGRGRLTEENIKDTLREVRMALLEADVALPVVRDFINRVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELTNAMGEVNTELNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A     DF  S++      +   A + A+
Sbjct: 121 GKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQGVGIDFFPSDVKEKPIEIVSRALQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 QKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|291279724|ref|YP_003496559.1| signal recognition particle receptor FtsY [Deferribacter
           desulfuricans SSM1]
 gi|290754426|dbj|BAI80803.1| signal recognition particle receptor FtsY [Deferribacter
           desulfuricans SSM1]
          Length = 388

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 137/305 (44%), Positives = 195/305 (63%), Gaps = 2/305 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +   ++++L  G + TS KL  GI  I    + +D+ + EELE+L + SDIG+    KI
Sbjct: 81  EKKAGFLKRLRNGLSKTSNKLVGGIETIFLGKKEIDEELLEELEELFVTSDIGINTTLKI 140

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++ +  +   K +     L +  +     ++ +          +P+VILVVGVNGVGKTT
Sbjct: 141 IDAVRDEVSRKVLKNPEDLKNSIKNKIFEILNIDNSLK-QVDEKPYVILVVGVNGVGKTT 199

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            I K++K   D GLK MLAAGDTFR+AAIDQL++WADR     V  + GSD AA+ Y+A 
Sbjct: 200 TIAKIAKMFKDNGLKTMLAAGDTFRAAAIDQLQVWADRVDVPIVKQQEGSDPAAVIYDAV 259

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+AK  DVLI DTAGRLH    LM  + K++RV+K+  P+APH +L VLDAT+GQNA+
Sbjct: 260 VSAKAKGYDVLIADTAGRLHTKYNLMNELKKIVRVVKKEMPNAPHEILLVLDATSGQNAI 319

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F+   G TG+++TK+DGTA+GG ++ IV   KIPV F+G GEG++DL+PF AK F
Sbjct: 320 NQAKIFNEAVGVTGIVLTKLDGTAKGGVIVGIVDELKIPVKFIGFGEGMDDLKPFDAKTF 379

Query: 307 SAVIT 311
              + 
Sbjct: 380 VDALF 384


>gi|226305929|ref|YP_002765889.1| signal recognition particle protein [Rhodococcus erythropolis PR4]
 gi|229491376|ref|ZP_04385200.1| signal recognition particle protein [Rhodococcus erythropolis
           SK121]
 gi|226185046|dbj|BAH33150.1| signal recognition particle protein [Rhodococcus erythropolis PR4]
 gi|229321661|gb|EEN87458.1| signal recognition particle protein [Rhodococcus erythropolis
           SK121]
          Length = 525

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 92/318 (28%), Positives = 149/318 (46%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL     D    E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FESLSDRLTGSLKDLRGKGRLSGADIDATAREIRLALLEADVALPVVRSFIAKIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELVEVLGGETRRLQF-AKTPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177
           +K + D G   +L A D  R  A+ QL+I  +R  A       G+              D
Sbjct: 121 AKWLKDQGHTPLLVACDLQRPGAVTQLQIVGERAGAAVFAPHPGTSIGGGENALGVSAAD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A+ K  DV+I+DTAGRL  +S LMA    +       D   P   + VL
Sbjct: 181 PVEVARAGVEEARNKHYDVVIVDTAGRLGIDSELMAQAAGI------RDAVNPDETIFVL 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   + F    G TG+++TK+DG ARGG  + +      P+ F   GE + D
Sbjct: 235 DAMIGQDAVSTADAFREGVGITGVVLTKLDGDARGGAALSVREVTGQPILFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     ++ I G  D
Sbjct: 295 FDVFHPDRMASRILGMGD 312


>gi|91203371|emb|CAJ71024.1| strongly similar to the signal recognition particle receptor of E.
           coli [Candidatus Kuenenia stuttgartiensis]
          Length = 423

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 135/308 (43%), Positives = 187/308 (60%), Gaps = 3/308 (0%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQ 64
           +  E ++   KL KG   T  +    + D +S R+ +D+   EELED+LI +DIGV   Q
Sbjct: 115 IKKEPVAVPGKLKKGLEKTRGRFWLRLKDFLSFRQGIDESALEELEDILIGADIGVRPVQ 174

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           K++EE+      K ++    + D + + +   L        +    RP VI+VVGVNGVG
Sbjct: 175 KLIEEIREAWKEKAITETSQINDFIKDRLKDGLHSWQTDIQY-ADKRPTVIMVVGVNGVG 233

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT I KL+  +   G KVMLAAGDTFR+AA+DQL IW  R  AD V  + GSD AA+AY
Sbjct: 234 KTTSIAKLASFLMKEGKKVMLAAGDTFRAAAVDQLDIWCKRIGADIVKHQTGSDPAAVAY 293

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + + A+ VDVLI+DTAGRLH +  LM  + K+ RV+K+  P APH VL VLDATTGQ
Sbjct: 294 DAMEASIARGVDVLIVDTAGRLHTHDNLMKELIKIKRVIKKKIPDAPHEVLLVLDATTGQ 353

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q  MF      TG+ + K+DGTA+GG ++ +    +IPV F+G+GE  +D+E F  
Sbjct: 354 NAISQARMFREAVDVTGIFLAKLDGTAKGGIVLGMCNETEIPVKFIGLGEQADDIERFNP 413

Query: 304 KDFSAVIT 311
             F   + 
Sbjct: 414 DLFVETLL 421


>gi|2500884|sp|Q55311|SRP54_SYNE7 RecName: Full=Signal sequence-binding protein
 gi|1279743|emb|CAA63054.1| signal sequence binding protein [Synechococcus elongatus PCC 7942]
          Length = 485

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++  T +    ++ +       +E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   FDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+ +  V + + +++     P     +  P VIL+ G+ G GKTT   KL
Sbjct: 62  TQVISGIRPDQQFIKVVYDELVQVMGETHVPL-AQAAKAPTVILMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAIDQL     +           ++   +A +  ++A+ 
Sbjct: 121 ALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKARQ 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D +I+DTAGRL  ++ +M  + ++   +      APH VL V+D+  GQ A      
Sbjct: 181 EGIDTVIVDTAGRLQIDTEMMEELAQVKEAI------APHEVLLVVDSMIGQEAASLTRS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TK+DG +RGG  + I      P+ F+G+GE +  L+PF  +  ++ I 
Sbjct: 235 FHERIGITGAILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|209360587|gb|ACI42964.1| signal recognition particle protein [Lactobacillus casei]
          Length = 478

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L++  + +    ++ +        E+   L+ +D+   V +  ++ + TK  
Sbjct: 2   AFEGLSERLQKAFSGLRRKGKVSESDIRDAMREIRLALLEADVNFDVVKTFIKNVRTKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + K +   + P N    H P VI++ G+ GVGKTT +GK
Sbjct: 62  GAEVLESLTPSQQIIKIVNDELVKTMGEAAVPLN-KAPHIPTVIMMAGLQGVGKTTTVGK 120

Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK + D    + +L A D +R AAIDQL+    + +          D   +  +    A
Sbjct: 121 LSKYLMDNDSARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDVDPVEIVRQGLATA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  K D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA TGQ A+   
Sbjct: 181 KENKNDYVLIDTAGRLQIDEKLMNELKNIKEL------AHPNDILLVVDAMTGQAAVDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F     +  
Sbjct: 235 KGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALDVFYPDRMANR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|322806714|emb|CBZ04283.1| signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)
           [Clostridium botulinum H04402 065]
          Length = 449

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL++ +  +    +L +  ++E + +    L+ +D+   V +  ++ +  K  
Sbjct: 2   AFDGLASKLQDALKKLRGKGKLSEKDIKEAMREVKLALLEADVNYKVVKNFIKSVTEKCM 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E + +++       N   S    VI++VG+ G GKTT+ GK
Sbjct: 62  GNEVLQSLTPGQQVIKIVNEELTELMGSTESTLNSSTSG-LTVIMLVGLQGAGKTTMAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +     + +L A D +R AAI QL++   +            +   ++  A + A+
Sbjct: 121 LALHLRKRNKRPLLVACDVYRPAAIKQLQVVGKQIDIPVFTMGDKLNPVDISKAAIEHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K +V+IIDTAGRLH +  LM  +  +   +       P  +L V+DA TGQ+A+    
Sbjct: 181 NNKNNVVIIDTAGRLHIDEELMDELHNIKEEVN------PSEILLVVDAMTGQDAVNVAN 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG  RGG  + I      P+ F+G+GE +NDLE F     ++ I
Sbjct: 235 NFNDKLDISGVILTKLDGDTRGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|227432057|ref|ZP_03914071.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227352174|gb|EEJ42386.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 491

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 137/306 (44%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L + I ++    R+ +         +   L+ +D+     +K V  +  K  
Sbjct: 2   AFENLTERLSKAIKNLTGRGRVSEEDLRATMRGIRLALLEADVNYDTVKKFVANVREKAS 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             D+       Q+++  V++ +   +   + P N      P +I++ G+ G GKTT + K
Sbjct: 62  GTDIMEGLNPAQQIVKIVNDELTATMGEEAVPLNKS-PKIPTIIMMAGLQGAGKTTTVAK 120

Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+ +    + +L A D +R AAIDQL+I                +   +     ++A
Sbjct: 121 LAYKLKNENNARPLLIAADIYRPAAIDQLEILGRDLDIPVFSMGTDVNPRDIVRAGLEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D + IDTAGRL  +  LM  +  +  +        P  +L  +DA TGQNA    
Sbjct: 181 AENKNDYVFIDTAGRLQIDEELMQELKDIAEI------ADPDEILLTVDAMTGQNAAETA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F A    TG+++TK+DG  RGG  + I      P+ F+G GE   DL+ F     ++ 
Sbjct: 235 KGFSASLDLTGVVLTKLDGDTRGGAALSIRDVTGKPIKFVGQGEKPTDLDVFYPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|24379497|ref|NP_721452.1| signal recognition particle protein subunit, Ffh [Streptococcus
           mutans UA159]
 gi|26007034|sp|Q54431|SRP54_STRMU RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|24377436|gb|AAN58758.1|AE014944_8 signal recognition particle protein subunit, Ffh [Streptococcus
           mutans UA159]
          Length = 516

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++   R+L +     V +E+   L+ +D+ + V ++ ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E +  +L   +       S  P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +   QA
Sbjct: 121 LANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 KENRNDYVLIDTAGRLQIDEKLMTELRDIKALAN------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|291618577|ref|YP_003521319.1| Ffh [Pantoea ananatis LMG 20103]
 gi|291153607|gb|ADD78191.1| Ffh [Pantoea ananatis LMG 20103]
 gi|327394957|dbj|BAK12379.1| signal recognition particle protein Ffh [Pantoea ananatis AJ13355]
          Length = 453

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINRVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV+      Q  +  V   +   +   +   +   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HDVNKSLTPGQEFIKIVRNELVTAMGAENNALDL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A +   DF  S++      +   A ++A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSDLSQKPVDIVNNALREAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ F+G+GE  + LE F     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGMGEKTDALEAFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|300172914|ref|YP_003772079.1| signal recognition particle protein [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887292|emb|CBL91260.1| Signal recognition particle protein [Leuconostoc gasicomitatum LMG
           18811]
          Length = 489

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L + + ++    R+ +        E+   L+ +D+     +K V  +  K  
Sbjct: 2   AFENLTERLSKAMKNLTGRGRVSEEDLRATMREIRLALLEADVNYDTVKKFVANVREKAS 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             D+       Q+V+  V++ +   +   + P N      P +I++ G+ G GKTT + K
Sbjct: 62  GADILEGLNPAQQVVKIVNDELTTTMGEEAAPLNKS-PKIPTIIMMAGLQGAGKTTTVAK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + +L A D +R AAIDQL+I                +   +  +   +A
Sbjct: 121 LAYKLKKEENARPLLIAADVYRPAAIDQLEILGRDLEIPVFQLGTAVNPREIVRQGLAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D + IDTAGRL  + +LM  +  +  +        P  +L  +DA TGQNA    
Sbjct: 181 AENKNDYVFIDTAGRLQIDDVLMQELKDVAEI------AHPDEILLTVDAMTGQNAAETA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F A    TG+++TK+DG  RGG  + I      P+ F+G GE   DL+ F     ++ 
Sbjct: 235 KGFSAALDLTGVVLTKLDGDTRGGAALSIRDVTGKPIKFVGQGEKPTDLDVFYPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|302872185|ref|YP_003840821.1| signal recognition particle protein [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575044|gb|ADL42835.1| signal recognition particle protein [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 443

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S S KL++    +    +L +  ++E +++    L+ +D+   V +  +  +  K   
Sbjct: 2   FSSLSEKLQDVFKKLRGKGKLTEKDIKEAMKEVKLALLEADVNYKVVKDFINTVTQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + +  +L        +  S    + ++VG+ G GKTT  GKL
Sbjct: 62  EEVLESLTPAQQVIKIVYDEMVNLLGGSDTKLTFSPSGF-SIYMMVGLQGSGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G    L A D +R AAI QL++ A +            DA  +A +  + A++
Sbjct: 121 AGLLKKQGKNPSLVACDIYRPAAIKQLEVVAQKVGVKCYADYTSQDAVKIAKDGIEFAKS 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            + DV+IIDTAGRLH N  LM  +  +   +K      P  +L V+DA TGQ+A+   E 
Sbjct: 181 NRSDVVIIDTAGRLHINQELMDELKNIKNAVK------PTEILLVVDAMTGQDAVNVAEA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+IMTK+DG  RGG  + +      P+ F GVGE + DLE F     ++ I 
Sbjct: 235 FNDQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVGEKMEDLEVFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|322391775|ref|ZP_08065240.1| signal recognition particle protein [Streptococcus peroris ATCC
           700780]
 gi|321145255|gb|EFX40651.1| signal recognition particle protein [Streptococcus peroris ATCC
           700780]
          Length = 521

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 144/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFENLTERLQNVFKNLRKKGKITESDIQEATKEIRLALLEADVALPVVKDFIKKVRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVNEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEEDARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVIDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     ++ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|256843368|ref|ZP_05548856.1| signal recognition particle protein [Lactobacillus crispatus
           125-2-CHN]
 gi|256849811|ref|ZP_05555242.1| signal recognition protein Ffh [Lactobacillus crispatus MV-1A-US]
 gi|262046944|ref|ZP_06019904.1| signal recognition particle protein [Lactobacillus crispatus
           MV-3A-US]
 gi|293381186|ref|ZP_06627194.1| signal recognition particle protein [Lactobacillus crispatus 214-1]
 gi|256614788|gb|EEU19989.1| signal recognition particle protein [Lactobacillus crispatus
           125-2-CHN]
 gi|256713300|gb|EEU28290.1| signal recognition protein Ffh [Lactobacillus crispatus MV-1A-US]
 gi|260572926|gb|EEX29486.1| signal recognition particle protein [Lactobacillus crispatus
           MV-3A-US]
 gi|290922226|gb|EFD99220.1| signal recognition particle protein [Lactobacillus crispatus 214-1]
          Length = 476

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S ++++ + ++    ++ +        E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFENLSERIQKALKNLTGKGKVSEEDINKASREIRLALLEADVNFKVVKDFIKTIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+V+  V+E + KM+   + P N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS-KHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      + +L AGD +R AA+DQLK   D+        +   D A +  +   +A
Sbjct: 121 LAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGDQLKVPVYSEDGEKDVAKIVQDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  K D ++IDTAGRL  +  LM  + ++ +V        P ++L V+DA TGQ A    
Sbjct: 181 EKNKNDYVLIDTAGRLEIDEPLMEELERVKKV------THPDNILLVVDAMTGQAATDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F G GE ++DL+ F     ++ 
Sbjct: 235 KGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|108804225|ref|YP_644162.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765468|gb|ABG04350.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rubrobacter
           xylanophilus DSM 9941]
          Length = 443

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +  S  L +     V  E+   L+ +D+   V ++ V  +  +   
Sbjct: 2   FDTLSERLNTALEGVRGSGTLTEEQVKKVTREIRLALLEADVNYNVVKEFVGRVRERATG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  ++   +   ++  S  P V+++ G+NG GKTT  GKL
Sbjct: 62  AEVSRALSPGQQVVKIVNEELANLMGGSAHKLSY-ASRPPTVVMLAGLNGHGKTTAAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G    L A DT+R AA+DQL+                +    +A    + A+ 
Sbjct: 121 ALFVRKQGKNPFLVACDTYRPAAVDQLRQIGRELGVPVYDEGTEAPPEEIAERGVRAARD 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DTAGR   ++ +M  +G++ R         PHSVL VLD  TGQ A+   + 
Sbjct: 181 GGYDFVIVDTAGRQVVDTEMMEELGRVRRAC------RPHSVLLVLDVVTGQTAVEVAQA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A   G+I+TK+DG ARGG  + +V     P+ F   GE +++ + F     +  I 
Sbjct: 235 FQEYADFDGMILTKLDGDARGGAALSVVSVTGRPIKFASEGEKMSEFDYFYPDRMAGRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|317152476|ref|YP_004120524.1| signal recognition particle protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942727|gb|ADU61778.1| signal recognition particle protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 501

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L          +RLD+  +RE L +    L+ +D+   V +  V+++  +   
Sbjct: 2   FESLQERLGNAFQKFKGQKRLDEDNIREGLREVRLALLEADVNFKVVKGFVDQVKERALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V        +++  V++ + ++L    +    D   +P  +++VG+ G GKTT  GK+
Sbjct: 62  EEVMKGLDPGAQIIKIVNDELVELLGGEQQGL--DLVAKPLKVMMVGLQGSGKTTSSGKI 119

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +  + G K  L   D +R AAIDQL   A +       S  G +   +  +A  +A 
Sbjct: 120 ALFLRKNHGRKPYLVPADVYRPAAIDQLNTLARQLDVPVYPSTTGMNPVDICRDAMAKAG 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D+++ DTAGRLH +  LM  +  + +         P  +L V DA TGQ+A+   E
Sbjct: 180 ELGCDLILFDTAGRLHIDETLMDELENIKQACS------PQEILFVADAMTGQDAVTVAE 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+++TKMDG ARGG  + I      PV F+G+GE +++LE F     ++ I
Sbjct: 234 AFNNKLGITGVVLTKMDGDARGGAALSIKSVTGRPVKFVGMGEKLSELELFHPDRIASRI 293

Query: 311 TGCLDY 316
            G  D 
Sbjct: 294 LGMGDM 299


>gi|224088549|ref|XP_002308469.1| predicted protein [Populus trichocarpa]
 gi|222854445|gb|EEE91992.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 152/311 (48%), Gaps = 15/311 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KLK    ++++   + + +R+ +   L+ +D+ + V ++ V+ 
Sbjct: 86  KAEMFGQLTSGLESAWNKLKG--EEVLTKENIAEPMRD-IRRALLEADVSLPVVRRFVQS 142

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +     +       Q+ +  V + + K++        +  S  P VIL+ G+ GVGK
Sbjct: 143 VGDQAVGVGLIRGVKPDQQFVKIVRDELVKLMGGEVSELVFAKSG-PTVILLAGLQGVGK 201

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT+  KL+  +   G   ML AGD +R AAIDQL I  ++              + +A +
Sbjct: 202 TTICAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGVSVYTEGTDVKPSEIARK 261

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+ K +DV+I+DTAGRL  +  +M  +  + RVL       P  VL V+DA TGQ 
Sbjct: 262 GLAEAKKKNIDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQE 315

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF   
Sbjct: 316 AAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEISGKPIKLVGRGERMEDLEPFYPD 375

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 376 RMAGRILGMGD 386


>gi|119356176|ref|YP_910820.1| signal recognition particle-docking protein FtsY [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353525|gb|ABL64396.1| signal recognition particle-docking protein FtsY [Chlorobium
           phaeobacteroides DSM 266]
          Length = 316

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 123/305 (40%), Positives = 184/305 (60%), Gaps = 6/305 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + +L +G + TS   +E ++ I   +  +D+   EELE +L+ +D+GV     IV+ +  
Sbjct: 9   LSRLKEGLSKTSETFREKLSLITQGKTEIDEEFLEELEHILVGADVGVETTLSIVDAITE 68

Query: 73  KRYAKD-VSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTV 127
           +   +   S + +   + E I +ML+   +     F+   S +P+VILVVGVNG GKTT 
Sbjct: 69  RAKRESYRSAEELNRMLMEEIQQMLLDSGEHYPIDFDAPLSAKPYVILVVGVNGAGKTTS 128

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           + KL+     AG KV++AA DTFR+AA +QLKIWADR     +    G+D A++ Y+A  
Sbjct: 129 VAKLAYNYEKAGKKVIIAAADTFRAAAYEQLKIWADRAGVPLIGQGQGADPASVVYDAVS 188

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A ++  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQNA+ 
Sbjct: 189 SAVSRNSDVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQNAVS 248

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F      TGL++TK+DGT++GG ++ I     +PV ++GVGE I+DL+ F    F 
Sbjct: 249 QAREFTRFVNVTGLVLTKLDGTSKGGIVLSISRELNLPVKYIGVGEKIDDLQLFDRARFV 308

Query: 308 AVITG 312
             + G
Sbjct: 309 EALLG 313


>gi|270290357|ref|ZP_06196582.1| signal recognition particle receptor [Pediococcus acidilactici 7_4]
 gi|270281138|gb|EFA26971.1| signal recognition particle receptor [Pediococcus acidilactici 7_4]
          Length = 385

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 179/316 (56%), Gaps = 8/316 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQK 65
               L+   K  +G   +     + ++ + ++   +DD   ++LE+ LI +D+G   A +
Sbjct: 70  EEPQLNEAEKYDRGLERSRKSFGQKLSALFTNFSGVDDDFYDDLEETLIEADVGFDTALE 129

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           I EE+  +   ++VS      Q ++  + +L  +          +     P V L VGVN
Sbjct: 130 ISEEVREEIEFENVSDPEKISQLIVRRLVDLYTRNGSAEDNHLVFS-KEGPTVFLFVGVN 188

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++ +    G KV+LAA DTFR+ AI QL+ WA+R   D V  +  SD AA
Sbjct: 189 GVGKTTSIGKMAARFKARGRKVLLAACDTFRAGAIQQLEEWANRDGVDIVTGKEKSDPAA 248

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A+EA K+A+A+  D++ IDTAGRL N   LM  + K+ RV+ R  P AP   L VLD+T
Sbjct: 249 VAFEAVKKAKAENYDLVFIDTAGRLQNKVNLMKELDKIKRVISREIPDAPQESLLVLDST 308

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q + F      TG+I+TK+DGTA+GG ++ I     + V ++G+GE + DL P
Sbjct: 309 TGQNALTQAKAFLETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGEKVEDLSP 368

Query: 301 FVAKDFSAVIT-GCLD 315
           F  +++   +  G LD
Sbjct: 369 FNPEEYVRGLFKGLLD 384


>gi|23098986|ref|NP_692452.1| signal recognition particle [Oceanobacillus iheyensis HTE831]
 gi|22777214|dbj|BAC13487.1| signal recognition particle [Oceanobacillus iheyensis HTE831]
          Length = 448

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  I  I    ++ +  V+E   E+   L+ +D+   V ++++ ++  +  
Sbjct: 2   AFEGLADRLQSTIKKITGKGKVSEQDVKEMTREVRLALLEADVNFKVVKQLITKIKERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V E + +++              P VI++VG+ G GKTT  GK
Sbjct: 62  GQEVMESLTPGQQVIKVVKEELTQLMGGEQSKIAV-ADRSPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +        +L A D +R AAI QL+    +           ++   +A++A + A
Sbjct: 121 LANHLRKKHNRNPLLVACDVYRPAAIKQLETLGTQLDMPVFSMGTEANPVDIAHQAIEHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D +IIDTAGRLH +  LM  +  +   +K      P  +  V+D+ TGQ+A+   
Sbjct: 181 KEEHRDYVIIDTAGRLHVDENLMDELQSIKNDVK------PDEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I      P+ F G+GE ++ LE F  +  ++ 
Sbjct: 235 ESFNEQLDITGVVLTKLDGDTRGGAALSIKSVTDKPIKFAGMGEKLDQLEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|167771629|ref|ZP_02443682.1| hypothetical protein ANACOL_03001 [Anaerotruncus colihominis DSM
           17241]
 gi|167666269|gb|EDS10399.1| hypothetical protein ANACOL_03001 [Anaerotruncus colihominis DSM
           17241]
          Length = 309

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 129/304 (42%), Positives = 186/304 (61%), Gaps = 5/304 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G   T   +   +  I++S  ++D+ + EELE+ LI SD+GVA + +I   
Sbjct: 1   MGFFGRLAEGLKKTRESMARKVDAIVNSFTKIDEELFEELEETLIMSDVGVATSAEICRR 60

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      + V+    + ++  E+I  ML           S +P ++LV+GVNGVGKTT I
Sbjct: 61  LRAAVKQRGVTDAAEVRELIKEIIADMLAGGEA---LSISTKPSIVLVIGVNGVGKTTTI 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  +   G +V+L A DTFR+AAIDQL++WADR   + V    G+D AA+ ++A   
Sbjct: 118 GKLAASLKAQGKQVLLGAADTFRAAAIDQLQVWADRAGVEMVRQSEGADPAAVVFDAITA 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+ VDV+I DTAGRLHN   LM  + K+ RV++R  P     VL VLDATTGQNAL Q
Sbjct: 178 GRARGVDVIICDTAGRLHNKKNLMDELSKISRVIQREAPGCDVEVLLVLDATTGQNALNQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F   AG TG+I+TK+DGTARGG +I I    ++P+ ++GVGE ++DL PF A DF  
Sbjct: 238 ARQFKEAAGITGIILTKLDGTARGGVVIGIRQELEVPIKYIGVGEQVDDLRPFNAADFVD 297

Query: 309 VITG 312
            + G
Sbjct: 298 ALFG 301


>gi|167040352|ref|YP_001663337.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter sp. X514]
 gi|300914436|ref|ZP_07131752.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter sp. X561]
 gi|307724328|ref|YP_003904079.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter sp. X513]
 gi|166854592|gb|ABY93001.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter sp. X514]
 gi|300889371|gb|EFK84517.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter sp. X561]
 gi|307581389|gb|ADN54788.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter sp. X513]
          Length = 319

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 196/312 (62%), Gaps = 5/312 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGV 60
              + A E   + +K+ +G   T   L   I  I++  R++D+ + EELE++LI +DIG+
Sbjct: 10  KESETAEEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGI 69

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +   KI+E +  K   + +     + ++ +E ++++L    +PF       P VIL VGV
Sbjct: 70  STTSKIIEGIRQKAKERKIYDASQIKELLAEEVYEILQKDVEPFTL---TSPMVILNVGV 126

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+      G KVMLAAGDTFR+AAIDQL+IWA+R +   +  + GSD A
Sbjct: 127 NGVGKTTTIGKLAYLYKKEGKKVMLAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGSDPA 186

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  + ++A+ +D+LI DTAGRLHN   LM  + K+ +V+ R  P A      VLDA
Sbjct: 187 SVIFDGIQASKARGIDILICDTAGRLHNKKNLMEELRKIRKVIDREYPEARVETFLVLDA 246

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL+Q ++F  V+  TG+++TK+DGTA+GG ++ I     +P+ ++G+GEGI DL+
Sbjct: 247 TTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGIGEGIEDLQ 306

Query: 300 PFVAKDFSAVIT 311
            F AK F + I 
Sbjct: 307 AFDAKSFVSAIF 318


>gi|88797601|ref|ZP_01113190.1| signal recognition particle receptor FtsY [Reinekea sp. MED297]
 gi|88779773|gb|EAR10959.1| signal recognition particle receptor FtsY [Reinekea sp. MED297]
          Length = 330

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 133/319 (41%), Positives = 200/319 (62%), Gaps = 5/319 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVA 61
             +      SW +++  G + T      G+ T ++  + LDD   EELE LL+ SD+G+ 
Sbjct: 15  ESQNNDSKPSWFQRVKNGLSKTRSGFSNGLATALLGRKTLDDDTLEELETLLLSSDVGIE 74

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             Q I+++L+ +   K+++    L + + E + + L P+ +P   D   +P VILVVGVN
Sbjct: 75  ATQTILDDLVERTSRKELNDNNALMNALRETLVEQLTPVEQPLQIDTGKQPFVILVVGVN 134

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++++    G  VMLAAGDTFR+AA++QL+ W +R +   +    G+D+A+
Sbjct: 135 GVGKTTTIGKMTQRFQSEGKSVMLAAGDTFRAAAVEQLQTWGERHNVPVIAQHTGADSAS 194

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+++ VDVLI DTAGRLHN   LMA + K++RV+K++D  APH VL VLDA 
Sbjct: 195 VIFDAVQAAKSRGVDVLIADTAGRLHNKDNLMAELEKVLRVMKKIDDSAPHEVLLVLDAG 254

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q E F   A  TG+ +TK+DGTARGG +  +     IPV F+GVGE   DL+ 
Sbjct: 255 TGQNAVAQAESFTKAAPLTGIALTKLDGTARGGIIFALARKFGIPVRFIGVGEQAEDLDR 314

Query: 301 FVAKDFSAVITGCLDYGEE 319
           F A++F + +    D  +E
Sbjct: 315 FSAQEFVSALL---DSDDE 330


>gi|315639588|ref|ZP_07894728.1| signal recognition particle protein [Enterococcus italicus DSM
           15952]
 gi|315484549|gb|EFU75005.1| signal recognition particle protein [Enterococcus italicus DSM
           15952]
          Length = 472

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ +    ++ +  V+E   E+   L+ +D+ + V ++  + +  +  
Sbjct: 2   AFESLTERLQQAMSKLRKKGKVTEADVKEMMREIRLALLEADVNLQVVKEFTKNVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E +   L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GAEVLDSLSPAQQIVKIVNEELTTTLGSETVGIEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++      + ++ AGD +R AAIDQLK+   +                +  +    A
Sbjct: 121 LANRLKKTENARPLMIAGDVYRPAAIDQLKVLGQQLDVPVFDMGTTVSPVEIVRQGLAVA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             KK D ++IDTAGRLH +  LM  + ++  +        P+ +L V+DA TGQ+A+   
Sbjct: 181 AEKKNDYVLIDTAGRLHVDEALMEELKQIKEL------AQPNEILLVVDAMTGQDAVTVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F G GE + DLE F     ++ 
Sbjct: 235 DSFNQQLGITGVVITKLDGDTRGGAALSIRSVTGAPIKFTGTGEKLTDLEIFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|161507707|ref|YP_001577663.1| Signal recognition protein Ffh [Lactobacillus helveticus DPC 4571]
 gi|260101393|ref|ZP_05751630.1| signal recognition particle protein [Lactobacillus helveticus DSM
           20075]
 gi|160348696|gb|ABX27370.1| Signal recognition protein Ffh [Lactobacillus helveticus DPC 4571]
 gi|260084804|gb|EEW68924.1| signal recognition particle protein [Lactobacillus helveticus DSM
           20075]
 gi|328465660|gb|EGF36877.1| signal recognition particle protein [Lactobacillus helveticus MTCC
           5463]
          Length = 476

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 152/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S ++++ + ++    ++ +        E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFENLSERIQKALKNLTGKGKVSEEDINKASREIRLALLEADVNFKVVKDFIKTIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+V+  V+E + KM+   + P N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQVIKIVNEELTKMMGEEAVPLNKS-KHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      + +L AGD +R AA+DQLK   ++        +   D A +  +   +A
Sbjct: 121 LAYHLQKTQKARPLLIAGDIYRPAAVDQLKQIGEQLKVPVFSEDGEKDVAKIVQDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM  + ++ +V        P ++L V+DA TGQ A    
Sbjct: 181 DKNKNDYVLIDTAGRLEIDEPLMEELERVKKV------AQPDNILLVVDAMTGQAATDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F G GE ++DL+ F     ++ 
Sbjct: 235 KGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSDLDIFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|148380407|ref|YP_001254948.1| signal recognition particle protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933476|ref|YP_001384624.1| signal recognition particle protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935337|ref|YP_001388141.1| signal recognition particle protein [Clostridium botulinum A str.
           Hall]
 gi|168180670|ref|ZP_02615334.1| signal recognition particle protein [Clostridium botulinum NCTC
           2916]
 gi|168184655|ref|ZP_02619319.1| signal recognition particle protein [Clostridium botulinum Bf]
 gi|226949802|ref|YP_002804893.1| signal recognition particle protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|237795885|ref|YP_002863437.1| signal recognition particle protein [Clostridium botulinum Ba4 str.
           657]
 gi|148289891|emb|CAL83999.1| signal recognition particle protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929520|gb|ABS35020.1| signal recognition particle protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931251|gb|ABS36750.1| signal recognition particle protein [Clostridium botulinum A str.
           Hall]
 gi|182668381|gb|EDT80360.1| signal recognition particle protein [Clostridium botulinum NCTC
           2916]
 gi|182672287|gb|EDT84248.1| signal recognition particle protein [Clostridium botulinum Bf]
 gi|226841461|gb|ACO84127.1| signal recognition particle protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|229263878|gb|ACQ54911.1| signal recognition particle protein [Clostridium botulinum Ba4 str.
           657]
          Length = 449

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL++ +  +    +L +  ++E + +    L+ +D+   V +  ++ +  K  
Sbjct: 2   AFDGLASKLQDALKKLRGKGKLSEKDIKEAMREVKLALLEADVNYKVVKNFIKSVTEKCM 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E + +++       N   S    VI++VG+ G GKTT+ GK
Sbjct: 62  GNEVLESLTPGQQVIKIVNEELTELMGSTESTLNSSTSG-LTVIMLVGLQGAGKTTMAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +     + +L A D +R AAI QL++   +            +   ++  A + A+
Sbjct: 121 LALHLRKRNKRPLLVACDVYRPAAIKQLQVVGKQIDIPVFTMGDKLNPVDISKAAIEHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K +V+IIDTAGRLH +  LM  +  +   +       P  +L V+DA TGQ+A+    
Sbjct: 181 NNKNNVVIIDTAGRLHIDEELMDELHNIKEEVN------PSEILLVVDAMTGQDAVNVAN 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG  RGG  + I      P+ F+G+GE +NDLE F     ++ I
Sbjct: 235 NFNDKLDISGVILTKLDGDTRGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|187778958|ref|ZP_02995431.1| hypothetical protein CLOSPO_02553 [Clostridium sporogenes ATCC
           15579]
 gi|187772583|gb|EDU36385.1| hypothetical protein CLOSPO_02553 [Clostridium sporogenes ATCC
           15579]
          Length = 449

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL++ +  +    +L +  ++E + +    L+ +D+   V +  ++ +  K  
Sbjct: 2   AFDGLASKLQDALKKLRGKGKLSEKDIKEAMREVKLALLEADVNYKVVKNFIKSVTEKCM 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E + +++       N   S    VI++VG+ G GKTT+ GK
Sbjct: 62  GNEVLGSLTPGQQVIKIVNEELTELMGSTESTLNSSTSG-LTVIMLVGLQGAGKTTMAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +     + +L A D +R AAI QL++   +                ++  A + A+
Sbjct: 121 LALHLRKRNKRPLLVACDVYRPAAIKQLQVVGKQIDIPVFTMGDKLSPVDISKAAIEHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K +V+IIDTAGRLH +  LM  +  +   +       P  +L V+DA TGQ+A+    
Sbjct: 181 NNKNNVVIIDTAGRLHIDEELMDELHNIKEEVN------PTEILLVVDAMTGQDAVNVAN 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG  RGG  + I      P+ F+G+GE +NDLE F     ++ I
Sbjct: 235 NFNDKLDISGVILTKLDGDTRGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|229495294|ref|ZP_04389029.1| signal recognition particle protein [Porphyromonas endodontalis
           ATCC 35406]
 gi|229317737|gb|EEN83635.1| signal recognition particle protein [Porphyromonas endodontalis
           ATCC 35406]
          Length = 442

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+    ++    R+ +       +++   L+ +D+   VA+K  + +      
Sbjct: 2   FENLSERLERSFKNLKGEGRITEINVAETLKDVRRALLDADVNYNVAKKFTDTVKETALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       + ++  V + + +++   +       S  P V+L+ G+ G GKTT  GKL
Sbjct: 62  RNVLTAVRPSEMMVKIVHDELARLMGGEAVELRLQGS--PAVVLMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +     K  L  A D +R AAIDQLK+  ++ +      E       +A      A+
Sbjct: 120 AKLLKTQRHKNPLLVACDVYRPAAIDQLKVLGEQLNIPVYAEEDNKKPVQIAERGITYAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRL  +  +M  I  +   +       P  VL V+D+ TGQ+A+   +
Sbjct: 180 EHGHDVVIVDTAGRLAVDEEMMQEIAAIKAAIN------PDEVLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GEG++ L+ F  +  +  I
Sbjct: 234 EFNDRLDFGGVVLTKLDGDTRGGAALSIRTVVTKPIKFVGTGEGMDALDVFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|315144939|gb|EFT88955.1| signal recognition particle protein [Enterococcus faecalis TX2141]
 gi|315162383|gb|EFU06400.1| signal recognition particle protein [Enterococcus faecalis TX0645]
          Length = 472

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 152/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +     +  E+   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E + K L   +   N   S  P VI++ G+ G GKTT  GK
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKS-SKIPTVIMMTGLQGAGKTTFTGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K +      + +L AGD +R AAIDQLK+   +           ++   +  +    A
Sbjct: 121 LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQLEVPVFDMGTDANPVEIVRQGLALA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D ++IDTAGRLH +  LM  + ++  +        P+ +L V+DA TGQ+A+   
Sbjct: 181 KEKKNDYVLIDTAGRLHIDEALMDELKQIKELAN------PNEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     S+ 
Sbjct: 235 DSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|304384765|ref|ZP_07367111.1| cell division protein FtsY [Pediococcus acidilactici DSM 20284]
 gi|304328959|gb|EFL96179.1| cell division protein FtsY [Pediococcus acidilactici DSM 20284]
          Length = 385

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 179/316 (56%), Gaps = 8/316 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQK 65
               L+   K  +G   +     + ++ + ++   +DD   ++LE+ LI +D+G   A +
Sbjct: 70  EEPQLNEAEKYDRGLERSRKSFGQKLSALFTNFSGVDDDFYDDLEETLIEADVGFDTALE 129

Query: 66  IVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           I EE+  +   ++VS      Q ++  + +L  +          +     P V L VGVN
Sbjct: 130 ISEEVREEIEFENVSDPEKISQLIVRRLVDLYTRNGSAEDNHLVFS-KEGPTVFLFVGVN 188

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++ +    G KV+LAA DTFR+ AI QL+ WA+R   D V  +  SD AA
Sbjct: 189 GVGKTTSIGKMAARFKARGRKVLLAACDTFRAGAIQQLEEWANRDGVDIVTGKEKSDPAA 248

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A+EA K+A+A+  D++ IDTAGRL N   LM  + K+ RV+ R  P AP   L VLD+T
Sbjct: 249 VAFEAVKKAKAENYDLVFIDTAGRLQNKVNLMKELDKIKRVISREIPDAPQESLLVLDST 308

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q + F      TG+I+TK+DGTA+GG ++ I     + V ++G+GE + DL P
Sbjct: 309 TGQNALTQAKAFLETTNVTGIILTKLDGTAKGGIVLAIRNQLHLAVKYVGLGEKVEDLSP 368

Query: 301 FVAKDFSAVIT-GCLD 315
           F  +++   +  G LD
Sbjct: 369 FNPEEYVRGLFKGLLD 384


>gi|323466313|gb|ADX70000.1| Signal recognition protein Ffh [Lactobacillus helveticus H10]
          Length = 476

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 152/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S ++++ + ++    ++ +        E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFENLSERIQKALKNLTGKGKVSEEDINKASREIRLALLEADVNFKVVKDFIKTIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+V+  V+E + KM+   + P N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQVIKIVNEELTKMMGEEAVPLNKS-KHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      + +L AGD +R AA+DQLK   ++        +   D A +  +   +A
Sbjct: 121 LAYHLQKTQKARPLLIAGDIYRPAAVDQLKQIGEQLKVPVFSKDGEKDVAKIVQDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM  + ++ +V        P ++L V+DA TGQ A    
Sbjct: 181 DKNKNDYVLIDTAGRLEIDEPLMEELERVKKV------AQPDNILLVVDAMTGQAATDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F G GE ++DL+ F     ++ 
Sbjct: 235 KGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSDLDIFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|189465616|ref|ZP_03014401.1| hypothetical protein BACINT_01974 [Bacteroides intestinalis DSM
           17393]
 gi|189437890|gb|EDV06875.1| hypothetical protein BACINT_01974 [Bacteroides intestinalis DSM
           17393]
          Length = 319

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 122/312 (39%), Positives = 183/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFGKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I++ +  +  ++  ++ Q +   + + I  +L   +      F    + +P+VI+VVGVN
Sbjct: 65  IIQRIEKRAASEKYMNAQELNTILRDEIAALLTENNSDDVDDFEAPIAKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW  R     V  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLDIWGGRVGVPVVKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY+    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +
Sbjct: 185 VAYDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FRKKEFVDSLFG 316


>gi|298504758|gb|ADI83481.1| signal recognition particle protein [Geobacter sulfurreducens
           KN400]
          Length = 452

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 140/304 (46%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
             + S KL      +     + ++ ++E L ++   L+ +D+   V +  VE +  +   
Sbjct: 2   LENLSDKLDVLFKKLRGQGVMSEENIKEALREVRLVLLEADVNFKVVKDFVERVRVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+V+  V E +  ++           +  P  I++VG+ G GKTT  GKL
Sbjct: 62  TQVLQSLTPGQQVIKIVQEELVALMGGGEDNSLDLAAKPPVSIMMVGLQGAGKTTSCGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +     + +L   D +R AAI+QLK    + S +   S    D   +  EA + A  
Sbjct: 122 ARLLKGQRRRPLLVPADVYRPAAIEQLKTLGRQLSVEVFDSRADQDPVDICREALRYATL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGR   +  LM  + ++    +      P  +L V DA TGQ A+     
Sbjct: 182 NGFDVVILDTAGRHQIDEYLMNELVRIKEAAE------PREILFVADAMTGQEAVNVASG 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TK+DG A+GG  + I      PV  +GVGE ++ LE F A    + I 
Sbjct: 236 FNDRLDITGVVLTKLDGDAKGGAALSIRAVTGKPVKLVGVGEKLDALEVFHADRLVSRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|238765364|ref|ZP_04626288.1| Signal recognition particle protein [Yersinia kristensenii ATCC
           33638]
 gi|238696406|gb|EEP89199.1| Signal recognition particle protein [Yersinia kristensenii ATCC
           33638]
          Length = 453

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELIAAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A+    DF  S++      +  +A +QA+
Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVQEKPIDIVNQALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|159903874|ref|YP_001551218.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9211]
 gi|159889050|gb|ABX09264.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9211]
          Length = 485

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S   ++ I  +    ++ +       +++   L+ +D+ ++V ++ V E+  K   
Sbjct: 2   FDDLSASFEDAIKGLRGENKISEENIGPALKQVRRALLEADVSLSVVKEFVAEVGQKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + +++   + P   + S +P VIL+ G+ G GKTT   KL
Sbjct: 62  AEVVRGVKPGQKFVEVVKQELVEVMGGENAPL-ANVSEKPTVILMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  + D G K ++ A D +R AAI+QL     +   D            +A    ++A+ 
Sbjct: 121 ALHLKDQGRKALMVAADVYRPAAIEQLTTLGSQIDIDVFSLGSNLKPEQIAASGLEKARN 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D L++DTAGRL  +S +M  + ++   +       P  VL V+D+  GQ A      
Sbjct: 181 EGFDTLLVDTAGRLQIDSEMMDEMVRIRSAVN------PDEVLLVVDSMIGQEAAELTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  LEPF  +  ++ I 
Sbjct: 235 FHEKVGITGAVLTKLDGDSRGGAALSIKKISGKPIKFIGTGEKVEALEPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|315613041|ref|ZP_07887952.1| signal recognition particle protein [Streptococcus sanguinis ATCC
           49296]
 gi|315315151|gb|EFU63192.1| signal recognition particle protein [Streptococcus sanguinis ATCC
           49296]
          Length = 523

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISETDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTKVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA   D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QANHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVIDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|281356109|ref|ZP_06242602.1| signal recognition particle protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281317478|gb|EFB01499.1| signal recognition particle protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 485

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 102/304 (33%), Positives = 156/304 (51%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL +    +     L +        E+   L+ +D+ + V  + +E + T+   
Sbjct: 2   FESLSDKLHDVFRKLRGQSTLTESNIADAMREIRLALLDADVNLNVVAEFIEAVKTECVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V++ + ++L       N  F+H+P  I++VG++G GKTT  GKL
Sbjct: 62  QDVVKSVTPGQQVVKIVNDKLVELLGGGVSELN--FAHKPTAIMLVGLHGSGKTTTAGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G KV+L AGD +R AAIDQL+I     S          + AA+A  A +QA  
Sbjct: 120 ALKLKRDGKKVLLVAGDVYRPAAIDQLEIIGKEISVPVHAERTSVNVAAIAVNAVEQAGR 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV+IIDTAGRL  +  ++  + ++ + ++      P  VL V DA  GQ A+   E 
Sbjct: 180 QGFDVVIIDTAGRLQIDETMVQELVRIRQAVQ------PDEVLLVADAALGQEAVSVAEH 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     TG I+TK+DG ARGG  + I      PV F+G+GE ++ LE F     +  I 
Sbjct: 234 FHRALDLTGFILTKLDGDARGGAALSIRKVTGCPVKFIGLGEKLDSLEVFYPDRMAGRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|167763124|ref|ZP_02435251.1| hypothetical protein BACSTE_01493 [Bacteroides stercoris ATCC
           43183]
 gi|167699464|gb|EDS16043.1| hypothetical protein BACSTE_01493 [Bacteroides stercoris ATCC
           43183]
          Length = 319

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 180/312 (57%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   I    ++DD V + LE++LI SD+GV    K
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFGKIARAIAGKSKVDDEVLDNLEEVLITSDVGVETTLK 64

Query: 66  IVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I+E +  +   +     + L   + + I  +L   +      F    + +P+VI+VVGVN
Sbjct: 65  IIERIEKRAADEKYMNAKELNVILRDEIAALLTENNSDDVDDFETPVTKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     +  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVIKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +
Sbjct: 185 VAFDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEGI DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FRKKEFVDSLFG 316


>gi|150390508|ref|YP_001320557.1| signal recognition particle protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149950370|gb|ABR48898.1| signal recognition particle protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 447

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + KL+  +  +    +L +  V E + +    L+ +D+   V +  V+ +  +   
Sbjct: 3   FEGLADKLQNTLQKLKGKGKLTENDVAEAMREVKLALLEADVNFKVVKDFVKIVKERATG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V+E + +++        +  S  P VI++VG+ G GKTT  GKL
Sbjct: 63  SEVFESLTPGQQVIKIVNEELTELMGTTQSKITFS-SKPPTVIMLVGLQGAGKTTTSGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L AGD +R AAI QL++   +                +A    +    
Sbjct: 122 AGYLKKQGKRPLLVAGDIYRPAAIKQLEVVGSQVDVPVFTLGDQISPVDIAKAGVEHGIK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV++IDTAGRLH +  LM  +  +   +K      P  +L V+D+ TGQ+A+   E 
Sbjct: 182 HGNDVVLIDTAGRLHIDDTLMDELKDIKTTVK------PQEILLVVDSMTGQDAVNVAEH 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+I+TK+DG  RGG  + +    + P+ F+G+GE +NDLEPF     ++ I 
Sbjct: 236 FDTKLGVDGIILTKLDGDTRGGAALSVRAVTRKPIKFVGLGEKLNDLEPFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|254421607|ref|ZP_05035325.1| signal recognition particle-docking protein FtsY, putative
           [Synechococcus sp. PCC 7335]
 gi|196189096|gb|EDX84060.1| signal recognition particle-docking protein FtsY, putative
           [Synechococcus sp. PCC 7335]
          Length = 570

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 183/312 (58%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ E ++W+ KL +G   T   L   +  I+    L+D   +E+E LL+++D+GVA   
Sbjct: 257 QISVEEITWLNKLRQGLDKTRRGLVNQLKSIVGQGPLNDEAVDEIEALLLQADVGVAATD 316

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDF---SHRPHVILVVGVN 120
           KI+  L +K   + +   + +  +  L+  ML  PL    N  F     +  + L+ GVN
Sbjct: 317 KIISALQSKLREETLPPDQAIDYLKSLLRDMLESPLEGKHNLTFTPEKDKLSIWLMTGVN 376

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT IGKL+   + +  + ++ A DTFR+AA++Q+K+W DR+  + + +    +D A
Sbjct: 377 GAGKTTTIGKLAHIATKSEFRCLIGAADTFRAAAVEQVKVWGDRSGVEVIANPGKNTDPA 436

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A ++ +++L+IDTAGRL N   LM  + K+ +++ +  P A    L VLDA
Sbjct: 437 AVVFDAISAANSRNIELLLIDTAGRLQNKKNLMDELSKVRKIIDKKAPGANVESLLVLDA 496

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           T GQN LRQ ++F   A  +G+++TK+DGTARGG  + +V    +P+ F+G GEGI DL 
Sbjct: 497 TLGQNGLRQAQVFAEAAQLSGVVLTKLDGTARGGVALAVVEQLGLPIRFIGAGEGIEDLR 556

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 557 PFSSYEFIEALL 568


>gi|148360983|ref|YP_001252190.1| signal recognition particle protein Ffh [Legionella pneumophila
           str. Corby]
 gi|148282756|gb|ABQ56844.1| signal recognition particle protein Ffh [Legionella pneumophila
           str. Corby]
          Length = 458

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L     ++    RL +        E+   LI +D+ + V ++ +E++  K   
Sbjct: 2   FENLTERLTRTFKNLRGQGRLTEDNIQHALREVRLSLIEADVALPVIKEFIEQVKQKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + +  ++       ++  +  P V L+ G+ G GKTT   KL
Sbjct: 62  QEVLTSLNPDQAFIKIVHDELIHVMGDERVELDYK-TQPPAVFLMAGLQGSGKTTSTAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K+M+A+ D +R AAI QLK+ A++    F  S+       +A +A + A+
Sbjct: 121 ARYLKETENKKIMMASVDVYRPAAIHQLKVLAEQIDVAFFDSDPNEQPIKIAQKALESAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VDVLI+DTAGRLH +  +M+ I  + + +       P   L V+D+ TGQ+A    +
Sbjct: 181 KQYVDVLILDTAGRLHVDEDMMSEIKSLHKAVN------PIETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK DG ARGG  + +      P+ F+G GE I  +EPF  +  ++ I
Sbjct: 235 AFHEALPLTGVILTKTDGDARGGAALSVKQITGKPIKFIGSGEKIEAVEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|253999931|ref|YP_003051994.1| signal recognition particle protein [Methylovorus sp. SIP3-4]
 gi|253986610|gb|ACT51467.1| signal recognition particle protein [Methylovorus sp. SIP3-4]
          Length = 450

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L++ +  +    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSGRLQQVVKTLRGQARLSEENISDAMREVRMALLEADVALPVVKEFIAQVKERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V E + +++   +   N      P +IL+ G+ G GKTT   KL
Sbjct: 62  RDVLQSLTPGQAVIQVVHEELTRLMGEQNVGLNLAAV-PPAIILMAGLQGSGKTTTSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ + +   KV+LA+ D +R AAI+QLK  A     D   S        +A      A+ 
Sbjct: 121 ARLLKEQKKKVLLASADVYRPAAIEQLKTLAKSLDVDCFDSNATQKPQDIAANVLDFAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I DTAGRL  +  +M  I ++  +L       P   L V+DA  GQ+A+     
Sbjct: 181 HFYDVVIFDTAGRLGIDEAMMGEIQQLHALLN------PVETLFVVDAMQGQDAVNTARA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG ARGG  + +      P+ F+GV E ++ LE F  +  ++ + 
Sbjct: 235 FGETLPLTGVILTKLDGDARGGAALSVRHITGKPIKFVGVSEKVDGLEVFHPERMASRVL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|225856949|ref|YP_002738460.1| signal recognition particle protein [Streptococcus pneumoniae
           P1031]
 gi|225725114|gb|ACO20966.1| signal recognition particle protein [Streptococcus pneumoniae
           P1031]
          Length = 523

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|327489572|gb|EGF21364.1| signal recognition particle protein [Streptococcus sanguinis
           SK1058]
          Length = 524

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISENDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEEKARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|313904181|ref|ZP_07837560.1| signal recognition particle protein [Eubacterium cellulosolvens 6]
 gi|313470983|gb|EFR66306.1| signal recognition particle protein [Eubacterium cellulosolvens 6]
          Length = 452

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++ S  +L +       +E++  L+ +D+   V ++  + +  K  
Sbjct: 2   AFESLTDKLQNVFKNLRSKGKLTEDDVKAALKEVKMALLEADVNFKVVKQFTKTVQEKAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V + +  ++   +       S+   VI+++G+ G GKTT + K
Sbjct: 62  GQDVMNGLNPGQMVIKIVHDELVNLMGESTTELPLKPSNDLTVIMMIGLQGSGKTTTVSK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +M   G K +LAA D +R  AI+QL+I  D+   +          A +A  A+  A+
Sbjct: 122 LAGQMKQKGRKPLLAALDVYRPGAIEQLQINGDKVGVEVFSMGNQVKPADIARAAYDHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   +VL +DTAGRL  +  +M  +  +   +K          L V+DA TGQ A+    
Sbjct: 182 STGANVLFLDTAGRLQIDESMMEELVAIRETIK------VDVSLLVVDAMTGQEAVNVAR 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+++TKMDG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 TFNEKVGIDGVVLTKMDGDTRGGAALSIRAICGKPIMYVGMGEKMSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|153940237|ref|YP_001391747.1| signal recognition particle protein [Clostridium botulinum F str.
           Langeland]
 gi|170754416|ref|YP_001781992.1| signal recognition particle protein [Clostridium botulinum B1 str.
           Okra]
 gi|152936133|gb|ABS41631.1| signal recognition particle protein [Clostridium botulinum F str.
           Langeland]
 gi|169119628|gb|ACA43464.1| signal recognition particle protein [Clostridium botulinum B1 str.
           Okra]
 gi|295319772|gb|ADG00150.1| signal recognition particle protein [Clostridium botulinum F str.
           230613]
          Length = 449

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL++ +  +    +L +  ++E + +    L+ +D+   V +  ++ +  K  
Sbjct: 2   AFDGLASKLQDALKKLRGKGKLSEKDIKEAMREVKLALLEADVNYKVVKNFIKSVTEKCM 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E + +++       N   S    VI++VG+ G GKTT+ GK
Sbjct: 62  GNEVLESLTPGQQVIKIVNEELTELMGSTESTLNSSTSG-LTVIMLVGLQGAGKTTMAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +     + +L A D +R AAI QL++   +            +   ++  A + A+
Sbjct: 121 LALHLRKRNKRPLLVACDVYRPAAIKQLQVVGKQIDIPVFTMGDKLNPVDISKAAIEHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K +V+IIDTAGRLH +  LM  +  +   +       P  +L V+DA TGQ+A+    
Sbjct: 181 NNKNNVVIIDTAGRLHIDEELMDELHNIKEEVN------PSEILLVVDAMTGQDAVNVAN 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG  RGG  + I      P+ F+G+GE +NDLE F     ++ I
Sbjct: 235 NFNDKLDISGVILTKLDGDTRGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|225860882|ref|YP_002742391.1| signal recognition particle protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230784|ref|ZP_06964465.1| signal recognition particle protein [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254274|ref|ZP_06977860.1| signal recognition particle protein [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502715|ref|YP_003724655.1| signal recognition particle protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225728379|gb|ACO24230.1| signal recognition particle protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238310|gb|ADI69441.1| signal recognition particle protein [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 523

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|296268962|ref|YP_003651594.1| signal recognition particle protein [Thermobispora bispora DSM
           43833]
 gi|296091749|gb|ADG87701.1| signal recognition particle protein [Thermobispora bispora DSM
           43833]
          Length = 508

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 146/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L    + + S  RL +   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FETLSDRLTSVFSSLRSRGRLSEADIDATCREIRIALLEADVALPVVKAFIARVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V + + ++L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVVKIVHDELIEVLGGETRRIRF-AKTPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +K + D G   +L A D  R  A+ QL + A+R        E G+   D  A+A ++   
Sbjct: 121 AKWLRDQGHAPLLVACDLQRPNAVQQLTVLAERAGVAIFAPEPGNGVGDPVAVARQSIDH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+ DV+I+DTAGRL  +  +M     +   +       P  VL VLDA  GQ+A+  
Sbjct: 181 AKRKQYDVVIVDTAGRLGIDEEMMRQAADIRDAIN------PDEVLFVLDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+++TK+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 ARAFMEGVGFDGVVLTKLDGDARGGAALSVRQITGRPIMFASTGEKLEDFDVFHPDRMAS 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|261367302|ref|ZP_05980185.1| signal recognition particle protein [Subdoligranulum variabile DSM
           15176]
 gi|282570905|gb|EFB76440.1| signal recognition particle protein [Subdoligranulum variabile DSM
           15176]
          Length = 451

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 142/305 (46%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L      +    +L++   +    E+   L+ +D+   VA+    ++  +  
Sbjct: 2   AFESLTERLNGVFKKLRGKGKLNEADIKAAMREVRMALLEADVNYKVAKDFCAQVSERAM 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E + K++      +    +    V+++ G+ G GKTT   K
Sbjct: 62  GQEVMESLTPAQQVVKIVNEELTKLMGGDEPQYLHIKNKGQTVLMMCGLQGNGKTTHAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L K     G + +L A D +R AAI QL+I  ++                +A +A   A+
Sbjct: 122 LGKYYRSQGRRPLLVACDVYRPAAIQQLQIVGEQAGVPVFTMGT-EKPEHIAQQAMAHAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGRL  +  LM  + ++   ++          L V+DA  GQ A+   +
Sbjct: 181 DHGNDIVILDTAGRLQIDDALMDELVRIKEAVE------VDETLLVVDAMAGQEAVNVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+++TK DG  RGG  + ++     P+YF G GE + DLEPF     ++ I
Sbjct: 235 TFNEKIGITGVVLTKTDGDTRGGAALSVLAVTGKPIYFQGTGEKLEDLEPFYPSRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|39995748|ref|NP_951699.1| signal recognition particle protein [Geobacter sulfurreducens PCA]
 gi|39982512|gb|AAR33972.1| signal recognition particle protein [Geobacter sulfurreducens PCA]
          Length = 452

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 140/304 (46%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
             + S KL      +     + ++ ++E L ++   L+ +D+   V +  VE +  +   
Sbjct: 2   LENLSDKLDVLFKKLRGQGVMSEENIKEALREVRLVLLEADVNFKVVKDFVERVRVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+V+  V E +  ++           +  P  I++VG+ G GKTT  GKL
Sbjct: 62  TQVLQSLTPGQQVIKIVQEELVALMGGGEDNSLDLAAKPPVPIMMVGLQGAGKTTSCGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +     + +L   D +R AAI+QLK    + S +   S    D   +  EA + A  
Sbjct: 122 ARLLKGQRRRPLLVPADVYRPAAIEQLKTLGRQLSVEVFDSRADQDPVDICREALRYATL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGR   +  LM  + ++    +      P  +L V DA TGQ A+     
Sbjct: 182 NGFDVVILDTAGRHQIDEYLMNELVRIKEAAE------PREILFVADAMTGQEAVNVASG 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TK+DG A+GG  + I      PV  +GVGE ++ LE F A    + I 
Sbjct: 236 FNDRLDITGVVLTKLDGDAKGGAALSIRAVTGKPVKLVGVGEKLDALEVFHADRLVSRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|332360637|gb|EGJ38446.1| signal recognition particle protein [Streptococcus sanguinis SK49]
          Length = 524

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISENDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKTLAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|332360439|gb|EGJ38250.1| signal recognition particle protein [Streptococcus sanguinis SK355]
          Length = 524

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 141/307 (45%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +   QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLDQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|154498106|ref|ZP_02036484.1| hypothetical protein BACCAP_02087 [Bacteroides capillosus ATCC
           29799]
 gi|150273096|gb|EDN00253.1| hypothetical protein BACCAP_02087 [Bacteroides capillosus ATCC
           29799]
          Length = 456

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 145/306 (47%), Gaps = 18/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL      +    RL +  V+E   E+   L+ +D+   V +  V ++  +  
Sbjct: 2   AFEGLTEKLSNAFKKLRGKGRLTEADVKEAMKEIRMALLEADVNYKVVKDFVAKVTERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q ++  V+E +  ++   S          P V+++VG+NG GKTT   K
Sbjct: 62  GSDVLESLTPAQMIVKIVNEELTALMGGESAKLTIS-PKPPTVVMLVGLNGAGKTTNGAK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M    G + +L A DTFR AAI QL++   +        +   D   +A    + A
Sbjct: 121 LAGFMKKQNGKRPLLVACDTFRPAAIQQLEVVGGQLGVPVF-QQGLGDPVEIAKAGIEHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D++ +DTAGRLH +  LMA + +M   +       P  +L ++DA  GQ+A+   
Sbjct: 180 RTHGNDIVFLDTAGRLHVDDQLMAELSRMKEAVS------PTEILLIVDAMIGQDAVNAA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F      TG+++TK+DG ARGG  + I      P+ F+G GE ++ +E F     ++ 
Sbjct: 234 KVFDQTLDLTGVMLTKLDGDARGGAALSIKAVTGKPIKFIGTGEKLDQIEVFHPDRMASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|315152349|gb|EFT96365.1| signal recognition particle protein [Enterococcus faecalis TX0031]
          Length = 472

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 152/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +  V+E   E+   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E + K L   +   N      P VI++ G+ G GKTT  GK
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKS-PKIPTVIMMTGLQGAGKTTFTGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K +      + +L AGD +R AAIDQLK+   +           ++   +  +    A
Sbjct: 121 LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQLEVPVFDMGTDANPVEIVRQGLALA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D ++IDTAGRLH +  LM  + ++  +        P+ +L V+DA TGQ+A+   
Sbjct: 181 KEKKNDYVLIDTAGRLHIDEALMDELKQIKELTN------PNEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     S+ 
Sbjct: 235 VSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|254495801|ref|ZP_05108713.1| signal recognition particle protein Ffh [Legionella drancourtii
           LLAP12]
 gi|254354958|gb|EET13581.1| signal recognition particle protein Ffh [Legionella drancourtii
           LLAP12]
          Length = 459

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L      +    RL +        E+   LI +D+ + V +  ++ +  K   
Sbjct: 2   FETLTERLTHAFKSLRGHARLTEENVQSALREVRFSLIEADVALPVIKDFIDRVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + +  ++       ++  +  P V L+ G+ G GKTT   KL
Sbjct: 62  QEVLNDLNPDQAFVKIVHDELILVMGGERAELDFK-TQPPAVFLMAGLQGSGKTTSTAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM+A+ D +R AAI QLK+ A++    F  +E      A+A +A   A+
Sbjct: 121 ARYLKETENKKVMVASVDVYRPAAIQQLKVLAEQIGVTFFPAEAHEQPLAIAQKALDSAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVLI+DTAGRLH ++ +MA I  + + +K      P   L V+D+ TGQ+A    +
Sbjct: 181 KQYMDVLILDTAGRLHVDAEMMAEIKALHQAIK------PIETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK DG ARGG  + +      P+ F+G GE ++ LEPF  +  ++ I
Sbjct: 235 AFHEALPLTGVILTKTDGDARGGAALSVKQITGQPIKFIGSGEKVDALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|87308020|ref|ZP_01090162.1| cell division protein FtsY [Blastopirellula marina DSM 3645]
 gi|87289102|gb|EAQ80994.1| cell division protein FtsY [Blastopirellula marina DSM 3645]
          Length = 328

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 175/312 (56%), Gaps = 3/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIG 59
                  +   +  +L +G   TS  L   I D+     R +DD    EL  +L+R+D+G
Sbjct: 14  PAPPAEEQPSGFFSRLKQGLVKTSRVLNTDIRDLFKQEGRLVDDEFLTELYAILVRTDMG 73

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           V  A KI +++ T    + V +  VL  V   +  ++     P  +  S  P V++VVGV
Sbjct: 74  VGPAGKIRDQVKTDFRGRVVHLSEVLTTVKTELVALMQQPETPIQFAESG-PTVVMVVGV 132

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT I KL+  +   G  V+L AGDTFR+AA++QL IWADR   D V +E GSD A
Sbjct: 133 NGSGKTTSIAKLASYLKSQGKSVVLGAGDTFRAAAVEQLSIWADRLGVDIVKAEQGSDPA 192

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A   A     DV+I+DTAGRL   + LM  + K+ RV  +    APH VL VLDA
Sbjct: 193 SVAFKAVDFALQNNKDVVILDTAGRLQTQTNLMNELDKIRRVAGKKIEAAPHEVLLVLDA 252

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           T GQN + Q + F   A  TG+I+TK+DGTA+GG ++PI  T  +PV ++GVGE   D  
Sbjct: 253 TAGQNGISQAKGFSEAAQCTGIILTKLDGTAKGGVVVPIRQTFNLPVKYIGVGETPEDFA 312

Query: 300 PFVAKDFSAVIT 311
            F A+ F   + 
Sbjct: 313 LFNAEQFGDALF 324


>gi|325957087|ref|YP_004292499.1| signal recognition particle protein [Lactobacillus acidophilus
           30SC]
 gi|325333652|gb|ADZ07560.1| signal recognition particle protein [Lactobacillus acidophilus
           30SC]
          Length = 476

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S ++++ + ++    ++ +        E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFENLSERIQKALKNLTGKGKVSEEDINKASREIRLALLEADVNFKVVKDFIKTIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+V+  V+E + KM+   + P N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS-KHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      + +L AGD +R AA+DQLK   ++        +   D A +  +   +A
Sbjct: 121 LAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGEQLKVPVYSEDGEKDVAKIVQDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  K D ++IDTAGRL  +  LM  + ++ +V        P ++L V+DA TGQ A    
Sbjct: 181 EKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAN------PDNILLVVDAMTGQAATDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F G GE ++DL+ F     ++ 
Sbjct: 235 KGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|315038606|ref|YP_004032174.1| signal recognition particle protein [Lactobacillus amylovorus GRL
           1112]
 gi|312276739|gb|ADQ59379.1| signal recognition particle protein [Lactobacillus amylovorus GRL
           1112]
 gi|327183810|gb|AEA32257.1| signal recognition particle protein [Lactobacillus amylovorus GRL
           1118]
          Length = 476

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S ++++ + ++    ++ +        E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFENLSERIQKALKNLTGKGKVSEEDINKASREIRLALLEADVNFKVVKDFIKTIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+V+  V+E + KM+   + P N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS-KHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      + +L AGD +R AA+DQLK   ++        +   D A +  +   +A
Sbjct: 121 LAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGEQLKVPVYSEDGEKDVAKIVQDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  K D ++IDTAGRL  +  LM  + ++ +V        P ++L V+DA TGQ A    
Sbjct: 181 EKNKNDYVLIDTAGRLEIDEPLMEELERVKKVAN------PDNILLVVDAMTGQAATDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F G GE ++DL+ F     ++ 
Sbjct: 235 KGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|226953505|ref|ZP_03823969.1| GTP-binding signal recognition particle protein [Acinetobacter sp.
           ATCC 27244]
 gi|294649506|ref|ZP_06726927.1| signal recognition particle protein [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835746|gb|EEH68129.1| GTP-binding signal recognition particle protein [Acinetobacter sp.
           ATCC 27244]
 gi|292824567|gb|EFF83349.1| signal recognition particle protein [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 469

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ-----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V  Q       +  V + + KM+   ++  +   +  P V+L+ G+ G GKTT   KL
Sbjct: 62  QEVMTQLSPGQAFVKIVYDELTKMMGEANETLDLS-AKPPVVVLLAGLQGAGKTTTAAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM  + D +R AAI QL+  ++     F+ S+       +   A +QA+
Sbjct: 121 ARFLKERQKKKVMTVSADVYRPAAIKQLETVSNEVGVGFIPSQASERPIDIVNRAIEQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 IQFADVLIVDTAGRLHVDDDMMDEIKELHAAVK------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF     +  I
Sbjct: 235 AFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGIGEKLDALEPFHPDRVAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|332993927|gb|AEF03982.1| signal recognition particle protein [Alteromonas sp. SN2]
          Length = 476

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + ++    RL +        E+   L+ +D+ + V +  V ++  +   
Sbjct: 2   FENLSERLGQTLRNVSGKGRLTEDNIKETLREVRMALLEADVALPVIKSFVAQVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +  ++   ++  N   +  P VIL+ G+ G GKTT + KL
Sbjct: 62  TEVTKSLKPGQIFIKIVQSELEAVMGEANEKLNL-ATQPPAVILMAGLQGAGKTTSVAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KVM+ + D +R AAI QL+  A   +  F  S I      +   A  +A+
Sbjct: 121 AKYLTEREKKKVMVVSADVYRPAAIKQLETLASEVNVAFHPSTILQTPIHIVEGAIDEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRLH +S +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 KNFFDVLLVDTAGRLHVDSDMMTEIKDLHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ F+G+GE ++ LEPF  +  ++ I
Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRHITGKPIKFIGMGEKVDALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|194398377|ref|YP_002037890.1| signal recognition particle protein [Streptococcus pneumoniae G54]
 gi|194358044|gb|ACF56492.1| signal recognition particle protein [Streptococcus pneumoniae G54]
          Length = 523

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|322385512|ref|ZP_08059156.1| signal recognition particle protein [Streptococcus cristatus ATCC
           51100]
 gi|321270250|gb|EFX53166.1| signal recognition particle protein [Streptococcus cristatus ATCC
           51100]
          Length = 522

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 139/307 (45%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISEADVQEATKEIRLALLEADVALPVVKDFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P VI++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAILGSDTAEI-IKSPKIPTVIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEFPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELADVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S  
Sbjct: 235 REFNNQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSGR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|15903209|ref|NP_358759.1| signal recognition particle protein [Streptococcus pneumoniae R6]
 gi|116515651|ref|YP_816611.1| signal recognition particle protein [Streptococcus pneumoniae D39]
 gi|15458797|gb|AAK99969.1| Signal recognition particle (Fifty four homolog) [Streptococcus
           pneumoniae R6]
 gi|116076227|gb|ABJ53947.1| signal recognition particle protein [Streptococcus pneumoniae D39]
          Length = 523

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMVAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|298246119|ref|ZP_06969925.1| signal recognition particle protein [Ktedonobacter racemifer DSM
           44963]
 gi|297553600|gb|EFH87465.1| signal recognition particle protein [Ktedonobacter racemifer DSM
           44963]
          Length = 507

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 152/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L+    ++    RL +        E+   LI +D+ + VA++ V+ +  K   
Sbjct: 4   FESLTKRLEGIFQNLEGRGRLTEEDVNSALREVRIALIEADVNLKVARQFVDRVKEKAIG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+VL  V + + ++L    +    D +  P +I++VG+ G GKTT   KL
Sbjct: 64  ADVMGSLSPAQQVLSIVHDELVEVLGGTGESNKLDTNGNPTIIMLVGLQGSGKTTSAAKL 123

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +    G + +L A D +R AA++QLK    +         +GSD   +   +   A+
Sbjct: 124 ANYLRKQNGSRPLLVAADMYRPAAVNQLKTLGKQIQVPVYSEPMGSDPVDICVHSLDYAR 183

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  +V+I+DTAGRL+ +  +M  +  +   +       PH VL V DA TGQ A+R  +
Sbjct: 184 EQACNVIILDTAGRLNIDERMMQEVVNIRERV------RPHEVLLVADAMTGQEAVRVAK 237

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG ARGG  + I     +PV F+ +GE ++ ++PF     +  I
Sbjct: 238 DFNDAVSLTGMVLTKMDGDARGGAALSIRTVTSVPVKFMALGEKLDAIQPFYPDRLAQRI 297

Query: 311 TGCLD 315
            G  D
Sbjct: 298 LGMGD 302


>gi|254432051|ref|ZP_05045754.1| signal recognition particle protein [Cyanobium sp. PCC 7001]
 gi|197626504|gb|EDY39063.1| signal recognition particle protein [Cyanobium sp. PCC 7001]
          Length = 494

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 143/305 (46%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ + ++     + +    G  +++   L+ +D+ + V +  V+E+  K   
Sbjct: 2   FDELSQRFEDAVKNLRGQGAISESNVEGALKDVRRALLEADVSLPVVKDFVDEVRRKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130
            +V       Q+ +  V E +   +   + P         P V+L+ G+ G GKTT   K
Sbjct: 62  AEVVRGISPDQKFIQVVHEQLVDTMGGENAPLAAGGKPGEPSVVLMAGLQGAGKTTATAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L   + + G + +L   D +R AAI+QL+    +   +       +    +A    ++A+
Sbjct: 122 LGLHLKEQGRRALLVGADVYRPAAIEQLRTLGGQIGVEVFSLGTEARPEDIAAAGVEKAR 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D +++DTAGRL  ++ +M  + ++   ++      P  VL V+D+  GQ A     
Sbjct: 182 EEGFDTVLVDTAGRLQIDTSMMEEMVRIREAVQ------PDEVLLVVDSMIGQEAAELTR 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I
Sbjct: 236 AFHEQVGITGAVLTKLDGDSRGGAALSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|152965364|ref|YP_001361148.1| signal recognition particle protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359881|gb|ABS02884.1| signal recognition particle protein [Kineococcus radiotolerans
           SRS30216]
          Length = 521

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L      +    RL     D    E+   L+ +D+ + V ++    +  +   
Sbjct: 2   FATLSDRLTATFKSLRGKGRLTEADVDATVREIRRALLDADVALPVVREFTSRIRERATG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVQQNLNPAQQVVKIVNEELVAILGGETRRLRFS-KNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G + +L A D  R  A++QL+I  +R   D    E G+   D  ++A +  + 
Sbjct: 121 GRHLKQNGNRPLLVACDLQRPNAVNQLQITGERAGVDVFAPEPGNGVGDPVSVARQGLEH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGR   ++ +M     +   +       P  VL VLDA  GQ+A+  
Sbjct: 181 ARHHHYDVVVVDTAGRTGVDAEMMQQAIDIRAAVT------PDEVLFVLDAMVGQDAVAT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G+++TK+DG ARGG  + +      PV F   GE ++D E F     ++
Sbjct: 235 AEAFRDGVGFDGVVLTKLDGDARGGAALSVRQVTGQPVMFASTGEKLDDFELFHPDRMAS 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|294139726|ref|YP_003555704.1| signal recognition particle protein Ffh [Shewanella violacea DSS12]
 gi|293326195|dbj|BAJ00926.1| signal recognition particle protein Ffh [Shewanella violacea DSS12]
          Length = 457

 Score =  285 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEDNVKETLREVRMALLEADVALPVVRAFVNNVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   +   +   ++  +   +  P VI+V G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELENAMGEANEGLDLS-ALPPAVIMVAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +       V++ + D +R AAI QL+  A      F  S++      +   A   A+
Sbjct: 121 GKFLREREKKSVLVVSADVYRPAAIKQLETLATEVDVQFFPSDVSQKPIDIVNAALAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDESMMDEIKALHAAVN------PVETLFVVDAMTGQDAAITAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LE F     ++ I
Sbjct: 235 AFNEALPLTGIVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEAFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|323340725|ref|ZP_08080977.1| signal recognition particle protein [Lactobacillus ruminis ATCC
           25644]
 gi|323091848|gb|EFZ34468.1| signal recognition particle protein [Lactobacillus ruminis ATCC
           25644]
          Length = 493

 Score =  285 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  I+ +    ++ +     V  E+   L+ +D+   V +  V+E+  +  
Sbjct: 14  AFEGLTERLQNAISKLKRKGKISESDVKEVMREIRLALLEADVNFKVVKDFVKEVKNRAV 73

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E + K++   +   N      P VI++VG+ G GKTT  GK
Sbjct: 74  GAEVLESLTPAQQIVKIVNEELIKVMGESAVSLNKS-KKIPTVIMMVGLQGAGKTTTAGK 132

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AA+DQLK                 D   +  +  K A
Sbjct: 133 LAYKLKKEENARPLMIAADVYRPAAVDQLKTVGKSIDVPVFELGTDVDPVEIVRQGMKLA 192

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +K D +IIDTAGRL  +  LM  + ++  +        P  +L  +D+ TGQNA+   
Sbjct: 193 EEQKNDYVIIDTAGRLQIDEKLMNELARIKEL------THPDEILLTVDSMTGQNAVEVA 246

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+G GE +  L+ F  +  ++ 
Sbjct: 247 QGFNDTLDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMTALDVFYPERMASR 306

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 307 ILGMGDM 313


>gi|163755934|ref|ZP_02163051.1| amidase [Kordia algicida OT-1]
 gi|161324105|gb|EDP95437.1| amidase [Kordia algicida OT-1]
          Length = 318

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 185/313 (59%), Gaps = 15/313 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           +S+ +K         L KG   +       +T  ++ + ++DD V + LE++L+ SD+GV
Sbjct: 1   MSFFKKIFSSEKKETLDKGLEKSKSSFFSKLTKAVAGKSKVDDEVLDNLEEVLVSSDVGV 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVIL 115
               KI++ +  +    K +    +   + E I  +L          +      +P+V++
Sbjct: 61  DTTLKIIDRIEERVAKDKYLGTDELNKILREEIAALLSETNSGEDTEYTIPADKKPYVLM 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT IGKL+ + +  GLKV+L A DTFR+AAIDQL++WADR     V   +G
Sbjct: 121 VVGVNGVGKTTTIGKLAHQFNKKGLKVVLGAADTFRAAAIDQLQVWADRVGVPIVKQSMG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++A++A +   A+  DV+IIDTAGRLHN   LM  + K+ +V++++   APH VL 
Sbjct: 181 SDPASVAFDALQSGVAQDADVIIIDTAGRLHNKVNLMKELTKVKKVMQKVIGDAPHDVLL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGI
Sbjct: 241 VLDGSTGQNAFEQAKQFTAATEVTTLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGI 300

Query: 296 NDLEPFVAKDFSA 308
            DL+ F   +F  
Sbjct: 301 EDLQVFNKYEFVD 313


>gi|289168093|ref|YP_003446362.1| signal recognition particle protein Ffh [Streptococcus mitis B6]
 gi|288907660|emb|CBJ22497.1| signal recognition particle protein Ffh [Streptococcus mitis B6]
          Length = 523

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFAGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|157150208|ref|YP_001450412.1| signal recognition particle protein [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075002|gb|ABV09685.1| signal recognition particle protein [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 524

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 141/307 (45%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KTNHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|332160294|ref|YP_004296871.1| signal recognition particle protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604475|emb|CBY25973.1| signal recognition particle, subunit Ffh SRP54 [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664524|gb|ADZ41168.1| signal recognition particle protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862670|emb|CBX72818.1| signal recognition particle protein [Yersinia enterocolitica
           W22703]
          Length = 453

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELIAAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A     DF  S++      +   A +QA+
Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQAVGVDFFPSDVQEKPIDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|284045138|ref|YP_003395478.1| signal recognition particle-docking protein FtsY [Conexibacter
           woesei DSM 14684]
 gi|283949359|gb|ADB52103.1| signal recognition particle-docking protein FtsY [Conexibacter
           woesei DSM 14684]
          Length = 331

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 116/308 (37%), Positives = 172/308 (55%), Gaps = 3/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +   +   + R+L +    T   L   IT  +    LD+   E+LE+ LI +D+G     
Sbjct: 25  QTEEKRRGFFRRLRENMRKTREALTSEITATLFE-DLDEETWEKLEEALIAADVGARTTA 83

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +IVE+L  +    D++    L      +   +  + +P   D +  P V+LVVGVNG GK
Sbjct: 84  EIVEQLEQEADRGDLAGGEQLTARLTELLADVARVGEP-RIDLTPSPTVLLVVGVNGTGK 142

Query: 125 TTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT +GKL+  +    G KV+L A DTFR+AA++QL+ W+ R    FV     SD A++AY
Sbjct: 143 TTSVGKLAWHLRKELGQKVVLGAADTFRAAAVEQLEEWSRRADVRFVKGPPDSDPASVAY 202

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           E       +  DV+I+DTAGRLH    LMA + K+ RV+ +  P APH  L  +DATTGQ
Sbjct: 203 ETVSTGVREGADVIIVDTAGRLHTQDNLMAELAKVRRVITKQLPDAPHETLITVDATTGQ 262

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N LRQ ++F      +G+++TK+DGTA+GG  + I    +IPV  +G+GE + DL PF  
Sbjct: 263 NGLRQAKLFAEAVDVSGIVLTKLDGTAKGGIALAIARELEIPVKMIGIGEQLEDLRPFDP 322

Query: 304 KDFSAVIT 311
            DF+  + 
Sbjct: 323 DDFARALL 330


>gi|152976211|ref|YP_001375728.1| signal recognition particle protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024963|gb|ABS22733.1| signal recognition particle protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 449

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E +  ++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTGLMGGEQSKIAV-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D ++IDTAGRLH +  LM  + K+  V        P  +  V+DA TGQ+A+   
Sbjct: 181 KEEHHDYVLIDTAGRLHIDEELMDELAKVKEVAN------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ +EPF  +  ++ 
Sbjct: 235 KSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|229549880|ref|ZP_04438605.1| signal recognition particle protein [Enterococcus faecalis ATCC
           29200]
 gi|255972664|ref|ZP_05423250.1| signal recognition particle protein [Enterococcus faecalis T1]
 gi|256959109|ref|ZP_05563280.1| signal recognition particle protein [Enterococcus faecalis DS5]
 gi|257079141|ref|ZP_05573502.1| signal recognition particle protein [Enterococcus faecalis JH1]
 gi|294781588|ref|ZP_06746924.1| signal recognition particle protein [Enterococcus faecalis PC1.1]
 gi|307269511|ref|ZP_07550850.1| signal recognition particle protein [Enterococcus faecalis TX4248]
 gi|312951630|ref|ZP_07770525.1| signal recognition particle protein [Enterococcus faecalis TX0102]
 gi|229304953|gb|EEN70949.1| signal recognition particle protein [Enterococcus faecalis ATCC
           29200]
 gi|255963682|gb|EET96158.1| signal recognition particle protein [Enterococcus faecalis T1]
 gi|256949605|gb|EEU66237.1| signal recognition particle protein [Enterococcus faecalis DS5]
 gi|256987171|gb|EEU74473.1| signal recognition particle protein [Enterococcus faecalis JH1]
 gi|294451284|gb|EFG19750.1| signal recognition particle protein [Enterococcus faecalis PC1.1]
 gi|306514131|gb|EFM82707.1| signal recognition particle protein [Enterococcus faecalis TX4248]
 gi|310630347|gb|EFQ13630.1| signal recognition particle protein [Enterococcus faecalis TX0102]
 gi|315037112|gb|EFT49044.1| signal recognition particle protein [Enterococcus faecalis TX0027]
 gi|315158208|gb|EFU02225.1| signal recognition particle protein [Enterococcus faecalis TX0312]
 gi|315168902|gb|EFU12919.1| signal recognition particle protein [Enterococcus faecalis TX1341]
 gi|323480859|gb|ADX80298.1| signal recognition particle protein [Enterococcus faecalis 62]
 gi|329571907|gb|EGG53585.1| signal recognition particle protein [Enterococcus faecalis TX1467]
          Length = 472

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +     +  E+   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E + K L   +   N      P VI++ G+ G GKTT  GK
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKS-PKIPTVIMMTGLQGAGKTTFTGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K +      + +L AGD +R AAIDQLK+   +           ++   +  +    A
Sbjct: 121 LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQLEVPVFDMGTDANPVEIVRQGLALA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D ++IDTAGRLH +  LM  + ++  +        P+ +L V+DA TGQ+A+   
Sbjct: 181 KEKKNDYVLIDTAGRLHIDEALMDELKQIKELTN------PNEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     S+ 
Sbjct: 235 DSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|300811712|ref|ZP_07092186.1| signal recognition particle protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497288|gb|EFK32336.1| signal recognition particle protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 476

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L++ + ++    ++ +        E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFENLSERLQKALRNLTGKGKISEEDINAASREIRLALLEADVNFKVVKDFIKTIKKRAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E + KM+   +        H P VI++VG+ G GKTT +GK
Sbjct: 62  GQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-PHIPTVIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++  +   +  L AGD +R AAIDQLK                   A +  +   +A
Sbjct: 121 LAYRLMKEEKARPFLIAGDIYRPAAIDQLKQIGADLKVPVYSDPEEKSVAKIVEDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              + D +IIDTAGRL  +  LM  + ++  V        P ++L V+DA TGQ A    
Sbjct: 181 AVHRNDYVIIDTAGRLEIDEPLMKELEEVKAV------SQPDNILLVVDAMTGQAAADVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG  RGG  + I      P+ F G GE + DLE F     ++ 
Sbjct: 235 QTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEKLTDLEVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|77409211|ref|ZP_00785921.1| signal recognition particle protein [Streptococcus agalactiae COH1]
 gi|77172187|gb|EAO75346.1| signal recognition particle protein [Streptococcus agalactiae COH1]
          Length = 521

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKHVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q+++  V+E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQIVKIVNEELTDLLGAETSEIEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + M+ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLIKEDNARPMMIAADIYRPAAIDQLKTLGSQINVPVFDMGTNHSAVEIVTKGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  ++ LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENRNDYVLIDTAGRLQIDATLMQELHDVKAI------AQPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     +G+++TK+DG  RGG  + +      P+ F G GE I D+E F     ++ 
Sbjct: 235 EEFNRQLSISGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|15901147|ref|NP_345751.1| signal recognition particle protein [Streptococcus pneumoniae
           TIGR4]
 gi|111658514|ref|ZP_01409180.1| hypothetical protein SpneT_02000341 [Streptococcus pneumoniae
           TIGR4]
 gi|148989312|ref|ZP_01820692.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP6-BS73]
 gi|148998927|ref|ZP_01826362.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP11-BS70]
 gi|149002661|ref|ZP_01827593.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP14-BS69]
 gi|168487456|ref|ZP_02711964.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|168491206|ref|ZP_02715349.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC0288-04]
 gi|168493207|ref|ZP_02717350.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|168575742|ref|ZP_02721657.1| signal recognition particle protein [Streptococcus pneumoniae
           MLV-016]
 gi|221231975|ref|YP_002511127.1| signal recognition particle protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225859083|ref|YP_002740593.1| signal recognition particle protein [Streptococcus pneumoniae
           70585]
 gi|237649986|ref|ZP_04524238.1| signal recognition particle protein [Streptococcus pneumoniae CCRI
           1974]
 gi|237821108|ref|ZP_04596953.1| signal recognition particle protein [Streptococcus pneumoniae CCRI
           1974M2]
 gi|307067936|ref|YP_003876902.1| signal recognition particle GTPase [Streptococcus pneumoniae AP200]
 gi|14972772|gb|AAK75391.1| signal recognition particle protein [Streptococcus pneumoniae
           TIGR4]
 gi|147755237|gb|EDK62289.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP11-BS70]
 gi|147759272|gb|EDK66265.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP14-BS69]
 gi|147925290|gb|EDK76369.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP6-BS73]
 gi|183569731|gb|EDT90259.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|183574503|gb|EDT95031.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC0288-04]
 gi|183576649|gb|EDT97177.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|183578377|gb|EDT98905.1| signal recognition particle protein [Streptococcus pneumoniae
           MLV-016]
 gi|220674435|emb|CAR68988.1| signal recognition particle protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225720844|gb|ACO16698.1| signal recognition particle protein [Streptococcus pneumoniae
           70585]
 gi|301794362|emb|CBW36790.1| signal recognition particle protein [Streptococcus pneumoniae
           INV104]
 gi|306409473|gb|ADM84900.1| Signal recognition particle GTPase [Streptococcus pneumoniae AP200]
 gi|332073626|gb|EGI84105.1| signal recognition particle protein [Streptococcus pneumoniae
           GA17570]
 gi|332203136|gb|EGJ17204.1| signal recognition particle protein [Streptococcus pneumoniae
           GA47901]
          Length = 523

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|327389521|gb|EGE87866.1| signal recognition particle protein [Streptococcus pneumoniae
           GA04375]
          Length = 523

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|227824776|ref|ZP_03989608.1| signal recognition particle protein [Acidaminococcus sp. D21]
 gi|226905275|gb|EEH91193.1| signal recognition particle protein [Acidaminococcus sp. D21]
          Length = 448

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL   I  I   + + +  ++E L D    L+ +D+   V ++   ++  +  
Sbjct: 2   AFEMLTDKLTAAIQKIRGQKTVTEQDLKETLRDVRLALLEADVNFKVVKEFTTKIKERVQ 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + +       Q ++  V E +  +L        +  S+ P VI++ G+ G GKTT IGK
Sbjct: 62  GQKIDPNLTAGQYIVKVVHEELIALLGGEQSKLQFS-SNPPTVIMLAGLQGAGKTTSIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G K ++ AGD +R AAI QL++                    +A EA K+A 
Sbjct: 121 LANYLRKNGKKPLMVAGDVYRPAAITQLEVIGKELDMPVFSMGSEVSPVTIAQEAIKRAN 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   D ++IDTAGRLH +  LM  +  +   +       P  +L V+DA TGQ+A+   E
Sbjct: 181 ALLCDTVLIDTAGRLHIDEKLMDELKNIKSAVH------PDEILLVVDAMTGQDAVTVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TGLI+TK+DG ARGG ++ +      PV F+G+GE ++ L+PF     ++ I
Sbjct: 235 AFNKALGITGLIVTKLDGDARGGAVLSVKSVADCPVKFVGMGEKLDALQPFYPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|116490535|ref|YP_810079.1| signal recognition particle subunit FFH/SRP54 (srp54) [Oenococcus
           oeni PSU-1]
 gi|290889938|ref|ZP_06553024.1| hypothetical protein AWRIB429_0414 [Oenococcus oeni AWRIB429]
 gi|116091260|gb|ABJ56414.1| signal recognition particle subunit FFH/SRP54 (srp54) [Oenococcus
           oeni PSU-1]
 gi|290480380|gb|EFD89018.1| hypothetical protein AWRIB429_0414 [Oenococcus oeni AWRIB429]
          Length = 507

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +++  +  +    ++     D    E+   L+ +D+ +  A+  ++++  K  
Sbjct: 2   AFENLTSRIQTAMKTLSGKGKVSETDLDETLREIRLALLEADVNLKTARNFIKQVRDKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              V       ++V+  V++ +  M+   + P N   S  P VI++ G+ G GKTT + K
Sbjct: 62  GAKVLEGLNPSEQVVKIVNDQLTAMMGEKAVPLNKS-SKIPTVIMMAGLQGAGKTTTVAK 120

Query: 131 LSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++ D    + +L A D +R AAI+QLK   D+ S       +G +   +  +  KQA
Sbjct: 121 LANRLKDENHARPLLIAADVYRPAAIEQLKSLGDQLSIPVFDEGVGENPRKIVEDGLKQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  K D + IDTAGRL  + +LM  +  + ++ +      P  +L  +DA TGQNA    
Sbjct: 181 RENKNDYVFIDTAGRLQIDQVLMQELKDIEKMAE------PDEILLTVDAMTGQNATETA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+   G TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 235 RGFNDALGITGVVLTKLDGDTRGGAALSIREVTGKPIKFVGEGEKVTDLDVFYPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|50084052|ref|YP_045562.1| GTP-binding signal recognition particle protein [Acinetobacter sp.
           ADP1]
 gi|49530028|emb|CAG67740.1| 4.5S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Acinetobacter sp.
           ADP1]
          Length = 470

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEQALG 61

Query: 77  KDVSVQ-----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V  Q       +  V + + KM+   ++  +   +  P V+L+ G+ G GKTT   KL
Sbjct: 62  QEVMTQLSPGQAFVKIVHDELTKMMGEANESLDL-AAKPPVVVLLAGLQGAGKTTTAAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KV + + D +R AAI QL+  A    A F  S        +A  A +QA+
Sbjct: 121 ARFLQERQKKKVAMVSADVYRPAAIKQLQTVAAEVGAMFFESNANEKPIDIANRAIEQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 IQFADVLIVDTAGRLHVDEDMMGEIKELHASIK------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF  +  +  I
Sbjct: 235 AFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPERIAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|319745019|gb|EFV97347.1| signal recognition particle protein [Streptococcus agalactiae ATCC
           13813]
          Length = 521

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKHVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q+++  V+E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQIVKIVNEELTDLLGSETSEIEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + M+ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLIKEDNARPMMIAADIYRPAAIDQLKTLGSQINVPVFDMGTNHSAVEIVTKGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  ++ LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENRNDYVLIDTAGRLQIDATLMQELHDVKAI------AQPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     +G+++TK+DG  RGG  + +      P+ F G GE I D+E F     ++ 
Sbjct: 235 EEFNRQLSISGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|170025580|ref|YP_001722085.1| signal recognition particle protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169752114|gb|ACA69632.1| signal recognition particle protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 453

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELISAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A     DF  S+       +   A +QA+
Sbjct: 121 GKFLKEKQKKKVLIVSADVYRPAAIKQLETLAQGVGIDFFPSDAQEKPIDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|22124802|ref|NP_668225.1| signal recognition particle protein [Yersinia pestis KIM 10]
 gi|45440246|ref|NP_991785.1| signal recognition particle protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808839|ref|YP_652755.1| signal recognition particle protein [Yersinia pestis Antiqua]
 gi|108810966|ref|YP_646733.1| signal recognition particle protein [Yersinia pestis Nepal516]
 gi|145600319|ref|YP_001164395.1| signal recognition particle protein [Yersinia pestis Pestoides F]
 gi|153949054|ref|YP_001402187.1| signal recognition particle protein [Yersinia pseudotuberculosis IP
           31758]
 gi|153997658|ref|ZP_02022758.1| signal recognition particle protein [Yersinia pestis CA88-4125]
 gi|162421754|ref|YP_001605456.1| signal recognition particle protein [Yersinia pestis Angola]
 gi|165925805|ref|ZP_02221637.1| signal recognition particle protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936674|ref|ZP_02225241.1| signal recognition particle protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010102|ref|ZP_02231000.1| signal recognition particle protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212941|ref|ZP_02238976.1| signal recognition particle protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399424|ref|ZP_02304948.1| signal recognition particle protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421480|ref|ZP_02313233.1| signal recognition particle protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423282|ref|ZP_02315035.1| signal recognition particle protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|218930317|ref|YP_002348192.1| signal recognition particle protein [Yersinia pestis CO92]
 gi|229838915|ref|ZP_04459074.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896398|ref|ZP_04511566.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis Pestoides A]
 gi|229899481|ref|ZP_04514623.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229901181|ref|ZP_04516304.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis Nepal516]
 gi|294505009|ref|YP_003569071.1| signal recognition particle protein [Yersinia pestis Z176003]
 gi|21957627|gb|AAM84476.1|AE013692_5 GTP-binding export factor [Yersinia pestis KIM 10]
 gi|45435102|gb|AAS60662.1| signal recognition particle protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774614|gb|ABG17133.1| signal recognition particle subunit FFH/SRP54 (srp54) [Yersinia
           pestis Nepal516]
 gi|108780752|gb|ABG14810.1| signal recognition particle subunit FFH/SRP54 (srp54) [Yersinia
           pestis Antiqua]
 gi|115348928|emb|CAL21887.1| signal recognition particle protein [Yersinia pestis CO92]
 gi|145212015|gb|ABP41422.1| signal recognition particle subunit FFH/SRP54 (srp54) [Yersinia
           pestis Pestoides F]
 gi|149289295|gb|EDM39375.1| signal recognition particle protein [Yersinia pestis CA88-4125]
 gi|152960549|gb|ABS48010.1| signal recognition particle protein [Yersinia pseudotuberculosis IP
           31758]
 gi|162354569|gb|ABX88517.1| signal recognition particle protein [Yersinia pestis Angola]
 gi|165915323|gb|EDR33933.1| signal recognition particle protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922417|gb|EDR39594.1| signal recognition particle protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991009|gb|EDR43310.1| signal recognition particle protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205728|gb|EDR50208.1| signal recognition particle protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960399|gb|EDR56420.1| signal recognition particle protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051928|gb|EDR63336.1| signal recognition particle protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057452|gb|EDR67198.1| signal recognition particle protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681906|gb|EEO77999.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis Nepal516]
 gi|229687478|gb|EEO79552.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695281|gb|EEO85328.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700472|gb|EEO88503.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis Pestoides A]
 gi|262363072|gb|ACY59793.1| signal recognition particle protein [Yersinia pestis D106004]
 gi|262366998|gb|ACY63555.1| signal recognition particle protein [Yersinia pestis D182038]
 gi|294355468|gb|ADE65809.1| signal recognition particle protein [Yersinia pestis Z176003]
 gi|320016490|gb|ADW00062.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 453

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELISAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A     DF  S+       +   A +QA+
Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVGIDFFPSDAQEKPIDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|299144003|ref|ZP_07037083.1| signal recognition particle protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518488|gb|EFI42227.1| signal recognition particle protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 445

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 153/304 (50%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL++ ++ +    +L     D    E++  L+ +D+   V +  ++ +  +   
Sbjct: 3   FESLSDKLQDTLSRLRGKGKLSEKDIDAAMREVKLALLEADVNFKVVKDFIKSVKERSLG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V+E +  ++         D+S +P VI++ G+ G GKTT   KL
Sbjct: 63  SEVLESLTPGQQVIKIVNEELTSLMGK--GEAKIDYSKKPTVIMMCGLQGAGKTTTSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  M   G + +L A D +R AAI QL+I                +   +A  A + A+ 
Sbjct: 121 ANLMKKNGKRPLLVACDVYRPAAIKQLQIVGSSVDVPVFSMGDKINPVDIAKAALEHAKK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+++DTAGRLH +  LM     ++R+ ++ +P     VL VLD+ TGQ+A+   + 
Sbjct: 181 NGNDVVLLDTAGRLHIDESLMEE---LLRMNEQTNPS---EVLLVLDSMTGQDAVNVADS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   +G+I+TK+DG ARGG  + I     +P+ F+ +GE ++ +E F     ++ I 
Sbjct: 235 FDKLLKLSGVILTKLDGDARGGAALSIRAVTDVPIKFIAMGEKLDQIEVFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|229545688|ref|ZP_04434413.1| signal recognition particle protein [Enterococcus faecalis TX1322]
 gi|255975716|ref|ZP_05426302.1| signal recognition particle protein [Enterococcus faecalis T2]
 gi|256619193|ref|ZP_05476039.1| signal recognition particle protein [Enterococcus faecalis ATCC
           4200]
 gi|256853255|ref|ZP_05558625.1| signal recognition particle protein [Enterococcus faecalis T8]
 gi|257082423|ref|ZP_05576784.1| signal recognition particle protein [Enterococcus faecalis E1Sol]
 gi|257085055|ref|ZP_05579416.1| signal recognition particle protein [Enterococcus faecalis Fly1]
 gi|257090014|ref|ZP_05584375.1| signal recognition particle protein [Enterococcus faecalis CH188]
 gi|257416220|ref|ZP_05593214.1| signal recognition particle protein [Enterococcus faecalis AR01/DG]
 gi|257422483|ref|ZP_05599473.1| signal recognition particle protein [Enterococcus faecalis X98]
 gi|300860172|ref|ZP_07106259.1| signal recognition particle protein [Enterococcus faecalis TUSoD
           Ef11]
 gi|307275840|ref|ZP_07556979.1| signal recognition particle protein [Enterococcus faecalis TX2134]
 gi|307289238|ref|ZP_07569194.1| signal recognition particle protein [Enterococcus faecalis TX0109]
 gi|307291863|ref|ZP_07571734.1| signal recognition particle protein [Enterococcus faecalis TX0411]
 gi|312901896|ref|ZP_07761161.1| signal recognition particle protein [Enterococcus faecalis TX0470]
 gi|229309138|gb|EEN75125.1| signal recognition particle protein [Enterococcus faecalis TX1322]
 gi|255968588|gb|EET99210.1| signal recognition particle protein [Enterococcus faecalis T2]
 gi|256598720|gb|EEU17896.1| signal recognition particle protein [Enterococcus faecalis ATCC
           4200]
 gi|256711714|gb|EEU26752.1| signal recognition particle protein [Enterococcus faecalis T8]
 gi|256990453|gb|EEU77755.1| signal recognition particle protein [Enterococcus faecalis E1Sol]
 gi|256993085|gb|EEU80387.1| signal recognition particle protein [Enterococcus faecalis Fly1]
 gi|256998826|gb|EEU85346.1| signal recognition particle protein [Enterococcus faecalis CH188]
 gi|257158048|gb|EEU88008.1| signal recognition particle protein [Enterococcus faecalis ARO1/DG]
 gi|257164307|gb|EEU94267.1| signal recognition particle protein [Enterococcus faecalis X98]
 gi|295113085|emb|CBL31722.1| signal recognition particle subunit FFH/SRP54 (srp54) [Enterococcus
           sp. 7L76]
 gi|300849211|gb|EFK76961.1| signal recognition particle protein [Enterococcus faecalis TUSoD
           Ef11]
 gi|306497129|gb|EFM66675.1| signal recognition particle protein [Enterococcus faecalis TX0411]
 gi|306499947|gb|EFM69308.1| signal recognition particle protein [Enterococcus faecalis TX0109]
 gi|306507532|gb|EFM76663.1| signal recognition particle protein [Enterococcus faecalis TX2134]
 gi|311291089|gb|EFQ69645.1| signal recognition particle protein [Enterococcus faecalis TX0470]
 gi|315029568|gb|EFT41500.1| signal recognition particle protein [Enterococcus faecalis TX4000]
 gi|315032040|gb|EFT43972.1| signal recognition particle protein [Enterococcus faecalis TX0017]
 gi|315147394|gb|EFT91410.1| signal recognition particle protein [Enterococcus faecalis TX4244]
 gi|315150780|gb|EFT94796.1| signal recognition particle protein [Enterococcus faecalis TX0012]
 gi|315156150|gb|EFU00167.1| signal recognition particle protein [Enterococcus faecalis TX0043]
 gi|315163852|gb|EFU07869.1| signal recognition particle protein [Enterococcus faecalis TX1302]
 gi|315169591|gb|EFU13608.1| signal recognition particle protein [Enterococcus faecalis TX1342]
 gi|315172461|gb|EFU16478.1| signal recognition particle protein [Enterococcus faecalis TX1346]
 gi|315577856|gb|EFU90047.1| signal recognition particle protein [Enterococcus faecalis TX0630]
          Length = 472

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +     +  E+   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E + K L   +   N      P VI++ G+ G GKTT  GK
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKS-PKIPTVIMMTGLQGAGKTTFTGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K +      + +L AGD +R AAIDQLK+   +           ++   +  +    A
Sbjct: 121 LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQLEVPVFDMGTDANPVEIVRQGLALA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D ++IDTAGRLH +  LM  + ++  +        P+ +L V+DA TGQ+A+   
Sbjct: 181 KEKKNDYVLIDTAGRLHIDEALMDELKQIKELAN------PNEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     S+ 
Sbjct: 235 DSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|51595183|ref|YP_069374.1| signal recognition particle protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186894198|ref|YP_001871310.1| signal recognition particle protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|51588465|emb|CAH20073.1| 4.5S-RNP protein (ffh), GTP binding export factor, part of signal
           recognition particle with 4.5S RNA [Yersinia
           pseudotuberculosis IP 32953]
 gi|186697224|gb|ACC87853.1| signal recognition particle protein [Yersinia pseudotuberculosis
           PB1/+]
          Length = 453

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELISAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A     DF  S+       +   A +QA+
Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVGIDFFPSDAQEKPIDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|238798966|ref|ZP_04642429.1| Signal recognition particle protein [Yersinia mollaretii ATCC
           43969]
 gi|238717195|gb|EEQ09048.1| Signal recognition particle protein [Yersinia mollaretii ATCC
           43969]
          Length = 453

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELIAAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A + S DF  S++      +   A +QA+
Sbjct: 121 GKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQQVSIDFFPSDVQEKPIDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQIHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|239994644|ref|ZP_04715168.1| signal recognition particle protein [Alteromonas macleodii ATCC
           27126]
          Length = 479

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + ++    RL +        E+   L+ +D+ + V +  V ++  +   
Sbjct: 2   FENLSERLGQTLRNVSGKGRLTEDNIKETLREVRMALLEADVALPVVKAFVAQVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +  ++   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  TEVTKSLKPGQVFIKIVQSELESVMGEANEKLNL-ATQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KVM+ + D +R AAI QL+  A   +  F  S I      +  +A  +A+
Sbjct: 121 AKYLTEREKKKVMVVSADVYRPAAIKQLETLAGEVNVAFHPSTILQKPIDIVNDAIVEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRLH ++ +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 KNFFDVLLVDTAGRLHVDNDMMDEIKELHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ F+G+GE ++ LEPF  +  ++ I
Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRHITGKPIKFIGMGEKVDALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|293365278|ref|ZP_06611995.1| signal recognition particle protein [Streptococcus oralis ATCC
           35037]
 gi|307703819|ref|ZP_07640760.1| signal recognition particle protein [Streptococcus oralis ATCC
           35037]
 gi|291316728|gb|EFE57164.1| signal recognition particle protein [Streptococcus oralis ATCC
           35037]
 gi|307622654|gb|EFO01650.1| signal recognition particle protein [Streptococcus oralis ATCC
           35037]
          Length = 523

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 144/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++   ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQDVFKNLRKKGKISEADVQEATKEIRLALLEADVALPVVKDFIKKVRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA   D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QANHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVIDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|238791382|ref|ZP_04635021.1| Signal recognition particle protein [Yersinia intermedia ATCC
           29909]
 gi|238729515|gb|EEQ21030.1| Signal recognition particle protein [Yersinia intermedia ATCC
           29909]
          Length = 453

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELIAAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A     DF  S++      +   A +QA+
Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVDIDFFPSDVQEKPIDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQIHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|191638588|ref|YP_001987754.1| Signal recognition particle protein Ffh [Lactobacillus casei BL23]
 gi|227534903|ref|ZP_03964952.1| signal recognition particle protein Ffh [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239631962|ref|ZP_04674993.1| signal recognition particle GTPase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066648|ref|YP_003788671.1| signal recognition particle GTPase [Lactobacillus casei str. Zhang]
 gi|190712890|emb|CAQ66896.1| Signal recognition particle protein Ffh [Lactobacillus casei BL23]
 gi|227187659|gb|EEI67726.1| signal recognition particle protein Ffh [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526427|gb|EEQ65428.1| signal recognition particle GTPase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300439055|gb|ADK18821.1| Signal recognition particle GTPase [Lactobacillus casei str. Zhang]
 gi|327382629|gb|AEA54105.1| Signal recognition particle protein [Lactobacillus casei LC2W]
 gi|327385824|gb|AEA57298.1| Signal recognition particle protein [Lactobacillus casei BD-II]
          Length = 478

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L++  + +    ++ +        E+   L+ +D+   V +  ++ + TK  
Sbjct: 2   AFEGLSERLQKAFSGLRRKGKVSESDIRDAMREIRLALLEADVNFDVVKTFIKNVRTKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + K +   + P N    H P VI++ G+ G GKTT +GK
Sbjct: 62  GAEVLESLTPSQQIIKIVNDELVKTMGEAAVPLN-KAPHIPTVIMMAGLQGAGKTTTVGK 120

Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK + D    + +L A D +R AAIDQL+    + +          D   +  +    A
Sbjct: 121 LSKYLMDNDSARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDVDPVEIVRQGLATA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  K D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA TGQ A+   
Sbjct: 181 KENKNDYVLIDTAGRLQIDEKLMNELKNIKEL------AHPNDILLVVDAMTGQAAVDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F     +  
Sbjct: 235 KGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALDVFYPDRMANR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|312903448|ref|ZP_07762628.1| signal recognition particle protein [Enterococcus faecalis TX0635]
 gi|310633324|gb|EFQ16607.1| signal recognition particle protein [Enterococcus faecalis TX0635]
          Length = 472

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +     +  E+   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E + K L   +   N      P VI++ G+ G GKTT  GK
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKS-PKIPTVIMMTGLQGAGKTTFTGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K +      + +L AGD +R AAIDQLK+   +           ++   +  +    A
Sbjct: 121 LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQLEVPVFDMGTDANPVEIVRQGLALA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D ++IDTAGRLH +  LM  + ++  +        P+ +L V+DA TGQ+A+   
Sbjct: 181 KEKKNDYVLIDTAGRLHIDEALMDELKQIKELAN------PNEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     S+ 
Sbjct: 235 DSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|198284558|ref|YP_002220879.1| signal recognition particle protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665204|ref|YP_002427226.1| signal recognition particle protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|7769071|gb|AAF69242.1|AF173880_5 signal recognition particle protein-like protein [Acidithiobacillus
           ferrooxidans]
 gi|198249079|gb|ACH84672.1| signal recognition particle protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517417|gb|ACK78003.1| signal recognition particle protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 458

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 150/306 (49%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + KL +   ++    RL +D +R+ L D    L+ +D+ + V +  +  +      
Sbjct: 2   FDNLTQKLTQTFKNLRGQGRLSEDNIRDALRDVRLALLEADVALPVVKDFINNVRESAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q  +  V + + +++   +   +   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  EAVVKSLTPGQVFVKIVHDELVQLMGAHNDSLDLS-ARPPAVILLAGLQGSGKTTTSAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + D    +V++ + D +R AA++QL         D   S  G     +A +A + AQ
Sbjct: 121 ALWLKDKEKKRVLMVSTDVYRPAAMEQLVHLGKDIEVDVFPSSPGQQPVRIAQDAVEAAQ 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRLH +  +MA    +   +K      P  +L V+DA TGQ+A+   +
Sbjct: 181 RGVYDVLIVDTAGRLHVDGEMMAEAQALTAAVK------PVELLFVVDAMTGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAV 309
            F+     TG+I+TK DG ARGG  + +      P+ F+G+GE I   LEPF  +  ++ 
Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRAITGKPIKFIGIGEKIRKGLEPFYPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|262373325|ref|ZP_06066604.1| signal recognition particle protein [Acinetobacter junii SH205]
 gi|262313350|gb|EEY94435.1| signal recognition particle protein [Acinetobacter junii SH205]
          Length = 469

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ-----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V  Q       +  V + + KM+   ++  +   +  P V+L+ G+ G GKTT   KL
Sbjct: 62  QEVMTQLSPGQAFVKIVYDELTKMMGEANETLDLS-AKPPVVVLLAGLQGAGKTTTAAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM  + D +R AAI QL+  ++     F+ S+       +   A +QA+
Sbjct: 121 ARFLKERQKKKVMTVSADVYRPAAIKQLETVSNEVGVGFIPSQASEKPIDIVNRAIEQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 IQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF     +  I
Sbjct: 235 AFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGIGEKLDALEPFHPDRVAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|239832906|ref|ZP_04681235.1| signal recognition particle protein [Ochrobactrum intermedium LMG
           3301]
 gi|239825173|gb|EEQ96741.1| signal recognition particle protein [Ochrobactrum intermedium LMG
           3301]
          Length = 710

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   +  +     L +        E+   LI +D+ + V +   + +  K   
Sbjct: 189 FESLQERLGSILNGLTGRGALSEADVTAALREVRRALIEADVSLEVVRSFTDRVREKAVG 248

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       + + +  P VI++VG+ G GKTT  GK+
Sbjct: 249 AEILKSIKPGQMVVKIVHDELVEMLGTEGVSIDLN-APAPVVIMMVGLQGSGKTTTTGKI 307

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      KV++A+ DT R AA +QL+    +T  D +    G     +A  A + A+
Sbjct: 308 AKRLTERQRKKVLMASLDTRRPAAQEQLRQLGIQTGVDTLPIIAGQSPVEIAKRAVQAAK 367

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 368 LGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------PHEILLVADSLTGQDAVNLAR 421

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+  +  GE ++ LE F  K  +  I
Sbjct: 422 NFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLIATGEKMDALEEFYPKRIADRI 481

Query: 311 TGCLD 315
            G  D
Sbjct: 482 LGMGD 486


>gi|254672835|emb|CBA07016.1| signal recognition particle protein [Neisseria meningitidis
           alpha275]
          Length = 446

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 85/287 (29%), Positives = 150/287 (52%), Gaps = 16/287 (5%)

Query: 38  SRRLDDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVS 89
           ++  +D ++E L +    L+ +D+ + V ++ V  +  K   ++V       Q  +  V+
Sbjct: 10  AKLTEDNIKEALREVRLALLEADVALPVVKEFVNNVKEKALGQEVVGSLTPDQAFIGVVN 69

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGD 148
           + + +++   +K  +   +  P V+L+ G+ G GKTT  GKL++ + +    KV++ + D
Sbjct: 70  KALTELMGRENKTLDLSVA-PPAVVLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSAD 128

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +R AAI+QL++ A++   DF  S+       +A  A   A+    DVL++DTAGRL  +
Sbjct: 129 VYRPAAIEQLRLLAEQVGVDFFPSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAID 188

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M  I  +   +       P   L V+DA  GQ+A+   + F+     TG+++TKMDG
Sbjct: 189 EEMMNEIKALHAAVN------PVETLFVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDG 242

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +RGG  + +      P+ F+GVGE IN LEPF     ++ I G  D
Sbjct: 243 DSRGGAALSVRHVTGKPIKFIGVGEKINGLEPFHPDRLASRILGMGD 289


>gi|302525168|ref|ZP_07277510.1| signal recognition particle protein [Streptomyces sp. AA4]
 gi|302434063|gb|EFL05879.1| signal recognition particle protein [Streptomyces sp. AA4]
          Length = 512

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 149/307 (48%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +    RL D   +    E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FDTLSDRLTSALQSLSRKGRLSDADIDATAREIRIALLEADVALPVVKAFIAKIKDRAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVVKIVNEELVGILGGETRRLNL-AKNPPSVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +  +   G   ML A D  R  A++QL+I  +R        E G+   D   +A  A ++
Sbjct: 121 AMWLKKQGHAPMLVACDLQRPNAVNQLQIVGERAGVTTFAPEPGNGVGDPVDVARRAIEE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+  + D++++DTAGRL  +  LM     +   ++      P  VL V+DA  GQ+A+  
Sbjct: 181 AKHAQYDIVVVDTAGRLGVDEELMKQAADIREAVQ------PDEVLFVVDAMIGQDAVTT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G TG+++TK+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFASNGEKLEDFDTFHPDRMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|123441193|ref|YP_001005180.1| signal recognition particle protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088154|emb|CAL10942.1| signal recognition particle protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 453

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELIAAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A     DF  S++      +   A +QA+
Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVGIDFFPSDVQEKPIDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|119946973|ref|YP_944653.1| signal recognition particle protein [Psychromonas ingrahamii 37]
 gi|119865577|gb|ABM05054.1| signal recognition particle subunit FFH/SRP54 (srp54) [Psychromonas
           ingrahamii 37]
          Length = 457

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++    RL +        E+   L+ +D+ + V +  +E + T+   
Sbjct: 2   FENLTERLSKTLKNVSGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFIEAIKTRSVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV+      Q  +  V   +   +  +++  +   +  P ++L+ G+ G GKTT + KL
Sbjct: 62  QDVAKSLSPGQAFIKIVQNELELAMGEVNESLDL-ATQPPAILLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            + +     K + + + D +R AAI QL+  A     +F  S+I      +A  A   A+
Sbjct: 121 GRLLKTRDKKSVLVVSADIYRPAAIKQLETLAAEVGVEFFPSDITQKPIDIANAAIAYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  + R +K      P   L V+DA TGQ+A    +
Sbjct: 181 KKFIDVVIVDTAGRLHVDGEMMDEIKDLHRAIK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ F+G+GE ++ LE F     ++ I
Sbjct: 235 SFNETLPLTGIILTKADGDARGGAALSIRHITGKPIKFIGMGEKVDALEAFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|125996652|gb|ABN60727.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           baltica OS155]
          Length = 478

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 23  FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 82

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + K +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 83  QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVIMMAGLQGAGKTTSVAKL 141

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A   + +F  S++      +A  A   A+
Sbjct: 142 GKFLRERHKKSVLVVSADVYRPAAIKQLETLAQEVAVEFFPSDVSQKPIDIAKAAIAHAK 201

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 202 LKFIDVVILDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 255

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 256 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 315

Query: 311 TGCLD 315
            G  D
Sbjct: 316 LGMGD 320


>gi|317969124|ref|ZP_07970514.1| signal recognition particle protein [Synechococcus sp. CB0205]
          Length = 488

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ + ++     ++    DG  +++   L+ +D+ + V +  VEE+  K   
Sbjct: 2   FDELSQRFEDAVKNLRGQGAINEGNIDGALKDVRRALLEADVSLPVVKDFVEEVRKKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
           ++V       Q+ +  V E + + +   + P         P V+L+ G+ G GKTT   K
Sbjct: 62  EEVVRGISPDQKFIQVVHEQLVETMGGENAPLAPAGKEGAPAVVLMAGLQGAGKTTATAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L   + + G + +L   D +R AAI+QLK    +   +       +   A+A    ++A+
Sbjct: 122 LGLHLKEKGRRALLVGADVYRPAAIEQLKTLGGQIGVEVFSLGTDAKPEAIAAAGIEKAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  D +++DTAGRL  ++ +M  + ++   ++      P  VL V+D+  GQ A     
Sbjct: 182 AEGFDTVLVDTAGRLQIDTSMMEEMVRIREAVQ------PDEVLLVVDSMIGQEAAELTR 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I
Sbjct: 236 AFHDQVGITGAVLTKLDGDSRGGAALSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|312622588|ref|YP_004024201.1| signal recognition particle-docking protein ftsy
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203055|gb|ADQ46382.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 301

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 123/302 (40%), Positives = 188/302 (62%), Gaps = 4/302 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     E +  ++ S R++DD + EELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFFDRLKEGLSKTKKNFTEKVESLLKSFRQIDDDLFEELEEVLVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +   + +   +    V EL+ + ++ +    N      P +IL+VGVNGVGKTT IG
Sbjct: 61  LKERVKKERILDPQ---IVKELLKEEMLNIINLENKLSEKYPLIILMVGVNGVGKTTSIG 117

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++  +   G KV++AA DTFR+AA +QL+IWA R   D +    G+D AA+ ++  +  
Sbjct: 118 KIANLLKSNGKKVLVAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGADPAAVVFDGIQAM 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQNAL Q 
Sbjct: 178 RARKADVLIVDTAGRLHTKKNLIEELKKINRVINQQMPEAAKETLLVIDATTGQNALNQA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     +G+++TK+DGTA+GG +I I    KIPV F+GVGE I+DL+ F AK+F   
Sbjct: 238 KEFNQAVNISGIVLTKLDGTAKGGIVISIYDELKIPVKFVGVGEKIDDLQYFNAKEFVDA 297

Query: 310 IT 311
           + 
Sbjct: 298 LF 299


>gi|295425198|ref|ZP_06817901.1| signal recognition particle protein [Lactobacillus amylolyticus DSM
           11664]
 gi|295064974|gb|EFG55879.1| signal recognition particle protein [Lactobacillus amylolyticus DSM
           11664]
          Length = 476

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S ++++ + ++    ++ +        E+   L+ +D+   V +  ++++  +  
Sbjct: 2   AFENLSERIQKALKNLTGKGKISEEDINKASREIRLALLEADVNFKVVKDFIKKIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+V+  V+E + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQVIKIVNEELTKMMGETAVGLNKS-KHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      + +L AGD +R AA+DQLK   D+            D A +  +   +A
Sbjct: 121 LAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGDQLKVPVYSEADEKDVAKIVQDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D +IIDTAGRL  +  LM  + ++ +V        P ++L V+DA TGQ A    
Sbjct: 181 DKNKNDYVIIDTAGRLEIDEPLMEELERIKKV------AQPDNILLVVDAMTGQAATDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ + G GE + DLE F     ++ 
Sbjct: 235 KGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPIIYTGQGEKLTDLEDFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|332967949|gb|EGK07037.1| signal recognition particle protein [Kingella kingae ATCC 23330]
          Length = 455

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + + ++   DI    +L +D ++E L +    L+ +D+ + + +  V+++  +   
Sbjct: 2   LDNLTKRFRKVFKDIHGQAKLNEDNIKEALREVRLALLEADVALPIVKDFVKQVKERALG 61

Query: 77  KD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K+        Q     V+E + +++   +   N   ++ P  +L+ G+ G GKTT +GKL
Sbjct: 62  KEFADNLTPEQAFFGIVNEALIELMGKENSALNL-AANPPATVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLKVML--AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +K + D   K  +   + D +R AAI+QLK+ A +   DF  S++  +   +A  A   A
Sbjct: 121 AKLLKDQNKKKKILVVSADVYRPAAIEQLKLLAQQVQVDFFPSDVSQNPVEIAKAAQDFA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DVL++DTAGRL  ++ +M  I  +   +       P   L V+DA  GQ+A+   
Sbjct: 181 KKQFYDVLMVDTAGRLAIDAEMMNEIQAIHATIN------PVETLFVVDAMLGQDAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TKMDG +RGG  + +  T   P+ F+G+GE IN LEPF     ++ 
Sbjct: 235 KAFDEALPLTGVILTKMDGDSRGGAALSVRQTTGKPIKFIGIGEKINGLEPFHPDRIASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|22537142|ref|NP_687993.1| signal recognition particle protein Ffh [Streptococcus agalactiae
           2603V/R]
 gi|25011071|ref|NP_735466.1| hypothetical protein gbs1017 [Streptococcus agalactiae NEM316]
 gi|76787075|ref|YP_329698.1| signal recognition particle protein [Streptococcus agalactiae A909]
 gi|76797794|ref|ZP_00780060.1| signal recognition particle protein [Streptococcus agalactiae
           18RS21]
 gi|77405715|ref|ZP_00782802.1| signal recognition particle protein [Streptococcus agalactiae H36B]
 gi|77412008|ref|ZP_00788337.1| signal recognition particle protein [Streptococcus agalactiae
           CJB111]
 gi|77413611|ref|ZP_00789797.1| signal recognition particle protein [Streptococcus agalactiae 515]
 gi|22534004|gb|AAM99865.1|AE014236_19 signal recognition particle protein Ffh [Streptococcus agalactiae
           2603V/R]
 gi|23095470|emb|CAD46676.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562132|gb|ABA44716.1| signal recognition particle protein [Streptococcus agalactiae A909]
 gi|76586870|gb|EAO63362.1| signal recognition particle protein [Streptococcus agalactiae
           18RS21]
 gi|77160320|gb|EAO71445.1| signal recognition particle protein [Streptococcus agalactiae 515]
 gi|77161964|gb|EAO72946.1| signal recognition particle protein [Streptococcus agalactiae
           CJB111]
 gi|77175711|gb|EAO78493.1| signal recognition particle protein [Streptococcus agalactiae H36B]
          Length = 521

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKHVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q+++  V+E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQIVKIVNEELTDLLGAETSEIEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + M+ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLIKEDNARPMMIAADIYRPAAIDQLKTLGSQINVPVFDMGTNHSAVEIVTKGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  ++ LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENRNDYVLIDTAGRLQIDATLMQELHDVKAI------AQPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     +G+++TK+DG  RGG  + +      P+ F G GE I D+E F     ++ 
Sbjct: 235 EEFNRQLSISGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|313124065|ref|YP_004034324.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280628|gb|ADQ61347.1| Signal recognition particle subunit FFH/SRP54 (Srp54)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 476

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L++ + ++    ++ +        E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFENLSERLQKALRNLTGKGKISEEDINAASREIRLALLEADVNFKVVKDFIKTIKKRAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E + KM+   +        H P VI++VG+ G GKTT +GK
Sbjct: 62  GQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-PHIPTVIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++  +   +  L AGD +R AAIDQL+                   A +  +   +A
Sbjct: 121 LAYRLMKEEKARPFLIAGDIYRPAAIDQLEQIGADLKVPVYSDPEEKSVAKIVEDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              + D +IIDTAGRL  +  LM  + ++  V +      P ++L V+DA TGQ A    
Sbjct: 181 AVHRNDYVIIDTAGRLEIDEPLMKELEEVKAVTQ------PDNILLVVDAMTGQAAADVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG  RGG  + I      P+ F G GE + DLE F     ++ 
Sbjct: 235 KTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEKLTDLEVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|94501301|ref|ZP_01307822.1| Signal recognition particle protein [Oceanobacter sp. RED65]
 gi|94426572|gb|EAT11559.1| Signal recognition particle protein [Oceanobacter sp. RED65]
          Length = 471

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  I    ++ +        E+   L+ +D+ + V +    ++  +   
Sbjct: 2   FENLQDRLNGALRAISGKSKITEDNIKGTLREVRMALLEADVALPVVKAFTNQVKERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q  L  V E +  ++   ++  +   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  SEVLKSLSPGQAFLKIVQEELQSVMGEANESLDL-AAKPPAVILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM+ + D +R AAI QL+  A    A F  S+       +A  A K+A+
Sbjct: 121 ARYLKEREKKKVMVVSADVYRPAAIKQLETLASEVGAQFFPSDEKQKPVDIANNAIKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 TQFADVLIVDTAGRLAVDEDMMAEIQSLHKAID------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+G+GE  + LEPF     ++ I
Sbjct: 235 AFSEALPLTGVVLTKADGDARGGAALSVRHVTGKPIKFMGMGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|332200732|gb|EGJ14804.1| signal recognition particle protein [Streptococcus pneumoniae
           GA41317]
          Length = 523

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|327474237|gb|EGF19644.1| signal recognition particle protein [Streptococcus sanguinis SK408]
          Length = 524

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKIAESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|260427997|ref|ZP_05781976.1| cell division protein FtsY [Citreicella sp. SE45]
 gi|260422489|gb|EEX15740.1| cell division protein FtsY [Citreicella sp. SE45]
          Length = 441

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 121/264 (45%), Positives = 181/264 (68%), Gaps = 2/264 (0%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           I +D+GV  A ++   +   R+ K VS Q +   ++  + +++ P+++P    +  +P V
Sbjct: 180 IAADMGVDTALRVSANIAEGRFGKRVSTQEIKQALAGEVARIMEPVARPLPL-YPRKPQV 238

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL++W  R     + + 
Sbjct: 239 VLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDTFRAAAVEQLQVWGQRAGVPVLTAP 298

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            GSD A+LA++A  +AQA+  D+L+IDTAGRL N   LM  + K++RV+++ DP APH+ 
Sbjct: 299 EGSDPASLAFDAMSKAQAEGADLLMIDTAGRLQNRQDLMEELAKIVRVIRKKDPDAPHNT 358

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLDATTGQNAL QVE+F  VA  +GL+MTK+DGTA+GG L+ +     +P++ +GVGE
Sbjct: 359 LLVLDATTGQNALNQVEIFRQVADVSGLVMTKLDGTAKGGVLVALADRFGLPIHAIGVGE 418

Query: 294 GINDLEPFVAKDFSAVITGCLDYG 317
            I+DL PF  ++F+A +TG  D G
Sbjct: 419 QIDDLAPFDPEEFAAALTGL-DNG 441


>gi|209364128|ref|YP_001424962.2| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii
           Dugway 5J108-111]
 gi|207082061|gb|ABS77866.2| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii
           Dugway 5J108-111]
          Length = 467

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   I  +    RL +        ++   LI +D+ + V +  +E +  K   
Sbjct: 8   LNNLTNRLTTSINKLRGLGRLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALG 67

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       + ++  V + +  +L       N + +  P VI++ G+ G GKTT + KL
Sbjct: 68  QEVIGNVRPGEALVKVVQDELTHLLGDELVEINLN-AQPPIVIVMAGLQGSGKTTTVAKL 126

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +       VM+A+ D +R AAI QL+  A + +A F  ++       +A  A KQA+
Sbjct: 127 ARWLLEIQKKSVMVASADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAE 186

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVLI+DTAGRLH +++LM  +  +       D   P  +L V+D+  GQ+A    +
Sbjct: 187 KQFMDVLILDTAGRLHIDNVLMEEMKAI------SDAVTPTEILLVVDSMMGQDAANVAK 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + + +  + P+ F+GVGE I+ LEPF     ++ I
Sbjct: 241 SFNDTLPLTGVILTKLDGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRI 300

Query: 311 TGCLD 315
            G  D
Sbjct: 301 LGMGD 305


>gi|197335050|ref|YP_002155306.1| signal recognition particle protein [Vibrio fischeri MJ11]
 gi|197316540|gb|ACH65987.1| signal recognition particle protein [Vibrio fischeri MJ11]
          Length = 457

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  V+ +      
Sbjct: 2   FDNLTDRLSRTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFVKRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N      P VIL+ G+ G GKTT  GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQAELEAVMGDSNEALNLAC-QPPAVILMAGLQGAGKTTSTGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S        +   A   A+
Sbjct: 121 AKLLKERDKKKVLVVSADVYRPAAIKQLETLATDVDVDFFPSSADQKPIDIVDAAISHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRL  ++ +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFFDVVIVDTAGRLAVDTEMMDEIKQLHAHVN------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      PV FLGVGE  + LEPF  +  ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPVKFLGVGEKTDALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|307706752|ref|ZP_07643557.1| signal recognition particle protein [Streptococcus mitis SK321]
 gi|307617837|gb|EFN96999.1| signal recognition particle protein [Streptococcus mitis SK321]
          Length = 523

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|256379924|ref|YP_003103584.1| signal recognition particle protein [Actinosynnema mirum DSM 43827]
 gi|255924227|gb|ACU39738.1| signal recognition particle protein [Actinosynnema mirum DSM 43827]
          Length = 518

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 147/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + ++    RL D   +    E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FNTLSDRLTSVLQNLRGKGRLSDADIDATAREIRVALLEADVALPVVRAFIAKVKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVIKIVNEELVAILGGETRRINL-AKNPPSVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +K +   G   +L A D  R  A+ QL++  +R        E G+   D   +A    ++
Sbjct: 121 AKWLRGQGHTPLLVACDLQRPNAVTQLQVVGERAGVSVFAPEPGNGVGDPVDVAKRGVEE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+  + D++++DTAGRL  +  +M     +   +       P  VL V+DA  GQ+A+  
Sbjct: 181 AKRAQHDIVVVDTAGRLGVDEEMMRQAADIRAAVN------PDEVLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G TG+++TK+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 ATAFSEGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFASNGEKLEDFDVFHPDRMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|292491046|ref|YP_003526485.1| signal recognition particle protein [Nitrosococcus halophilus Nc4]
 gi|291579641|gb|ADE14098.1| signal recognition particle protein [Nitrosococcus halophilus Nc4]
          Length = 452

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    RL +D +++ L +    L+ +D+ + V +  V ++  +   
Sbjct: 2   FDNLTERLGQTLKRLRGQARLTEDNIKDTLREVRVALLEADVALPVVRDFVAKVRERAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V E +  ++   ++    D    P VIL+ G+ G GKTT + KL
Sbjct: 62  QEVLRSLTPGQVFIKIVHEELMAVMGEAAEGLKLDV-RPPAVILMAGLQGSGKTTTVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +       V++ + D +R AAI QL+  A     DF  SE   D   +A  AF+QA+
Sbjct: 121 ARWLKERQKKSVLVTSADVYRPAAIQQLETLAQEVEVDFYPSEASQDPVVIAQGAFQQAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLIIDTAGRLH +  +MA I ++   ++          L V+D+ TGQ+A     
Sbjct: 181 TRLFDVLIIDTAGRLHVDDQMMAEIKRLHGAVEPA------ETLFVVDSMTGQDAANTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LE F     ++ I
Sbjct: 235 AFNDSLALTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTAALELFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|170758261|ref|YP_001787761.1| signal recognition particle protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405250|gb|ACA53661.1| signal recognition particle protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 449

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL++ +  +    +L +  ++E + +    L+ +D+   V +  ++ +  K  
Sbjct: 2   AFDGLASKLQDALKKLRGKGKLSEKDIKEAMREVKLALLEADVNYKVVKNFIKSVTEKCM 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E + +++       N   S    VI++VG+ G GKTT+ GK
Sbjct: 62  GNEVLGSLTPGQQVIKIVNEELTELMGSTESTLNSSTSG-LTVIMLVGLQGAGKTTMAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +     + +L A D +R AAI QL++   +            +   ++  A + A+
Sbjct: 121 LALHLRKRNKRPLLVACDVYRPAAIKQLQVVGKQIDIPVFTMGDKLNPVDISKAAIEHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K +V+IIDTAGRLH +  LM  +  +   +       P  +L V+DA TGQ+A+    
Sbjct: 181 NNKNNVVIIDTAGRLHIDEELMDELHNIKGEVN------PSEILLVVDAMTGQDAVNVAN 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG  RGG  + I      P+ F+G+GE +NDLE F     ++ I
Sbjct: 235 NFNDKLDISGVILTKLDGDTRGGAALSIKSMTGKPIKFVGLGEKMNDLEVFYPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|296111749|ref|YP_003622131.1| signal recognition particle protein Ffh [Leuconostoc kimchii IMSNU
           11154]
 gi|295833281|gb|ADG41162.1| signal recognition particle protein Ffh [Leuconostoc kimchii IMSNU
           11154]
          Length = 491

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 139/306 (45%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L + + ++    R+ +        E+   L+ +D+     +K V  +  K  
Sbjct: 2   AFENLTQRLSKAMKNLTGRGRVSEEDLRATMREIRLALLEADVNYDTVKKFVANVREKAS 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             D+       Q+++  V++ +   +   + P N      P +I++ G+ G GKTT + K
Sbjct: 62  GADILEGLNPAQQIVKIVNDELTATMGEEAVPLNKS-PKIPTIIMMAGLQGAGKTTTVAK 120

Query: 131 LSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + +L A D +R AAIDQL+I                +   +  +   QA
Sbjct: 121 LAYKLKKESQARPLLIAADVYRPAAIDQLEILGRDLDIPVFQLGTEVNPRDIVRQGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D + IDTAGRL  + +LM  +  +  + K      P  +L  +DA TGQNA    
Sbjct: 181 AENKNDYVFIDTAGRLQIDDVLMQELKDVAEIAK------PDEILLTVDAMTGQNAAETA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F A    TG+++TK+DG  RGG  + I      P+ F+G GE   DL+ F     ++ 
Sbjct: 235 KGFSASLDLTGVVLTKLDGDTRGGAALSIRDVTGKPIKFVGQGEKPTDLDVFYPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|227513457|ref|ZP_03943506.1| signal recognition particle protein Ffh [Lactobacillus buchneri
           ATCC 11577]
 gi|227524600|ref|ZP_03954649.1| signal recognition particle protein Ffh [Lactobacillus hilgardii
           ATCC 8290]
 gi|227083330|gb|EEI18642.1| signal recognition particle protein Ffh [Lactobacillus buchneri
           ATCC 11577]
 gi|227088275|gb|EEI23587.1| signal recognition particle protein Ffh [Lactobacillus hilgardii
           ATCC 8290]
          Length = 478

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  +  +    ++ +        E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLTERLQNAMKKLRGKGKVSEADLRATMREIRLALLEADVNFQVVRTFVKTVEERAK 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              V       Q+++  V E + K +   + P N      P VI++ G+ G GKTT +GK
Sbjct: 62  GAKVLEGLNPSQQIVKIVDEELTKTMGQEAVPLNKS-EKIPTVIMMSGLQGAGKTTTVGK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+ +    + +L A D +R AAI+QL+    +            D   +A    ++A
Sbjct: 121 LALKLKNEQNARPLLIADDVYRPAAIEQLQTVGQQVDVPVFQLGTDVDPVEIAKRGLEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +IIDTAGRL  +  LM  +G + + +       P  +L V+DA TGQNA+   
Sbjct: 181 KEDHNDYVIIDTAGRLQIDEKLMDELGNIKKAVN------PDEILLVIDAMTGQNAVATA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 235 EGFDKTLDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMEDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|165924213|ref|ZP_02220045.1| putative Signal recognition particle protein (Fifty-four homolog)
           [Coxiella burnetii RSA 334]
 gi|165916338|gb|EDR34942.1| putative Signal recognition particle protein (Fifty-four homolog)
           [Coxiella burnetii RSA 334]
          Length = 311

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   I  +    RL +        ++   LI +D+ + V +  +E +  K   
Sbjct: 2   LNNLTNRLTTSINKLRGLGRLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       + ++  V + +  +L       N + +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVIGNVRPGEALVKVVQDELTHLLGDELVEINLN-AQPPIVIVMAGLQGSGKTTTVAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +       VM+A+ D +R AAI QL+  A + +A F  ++       +A  A KQA+
Sbjct: 121 ARWLLEIQKKSVMVASADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAE 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVLI+DTAGRLH +++LM  +  +       D   P  +L V+D+  GQ+A    +
Sbjct: 181 KQFMDVLILDTAGRLHIDNVLMEEMKAI------SDAVTPTEILLVVDSMMGQDAANVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + + +  + P+ F+GVGE I+ LEPF     ++ I
Sbjct: 235 SFNDTLPLTGVILTKLDGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|118579532|ref|YP_900782.1| signal recognition particle protein [Pelobacter propionicus DSM
           2379]
 gi|118502242|gb|ABK98724.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pelobacter
           propionicus DSM 2379]
          Length = 453

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 141/304 (46%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     +     + +D ++E L +    L+ +D+   V +  VE +  K   
Sbjct: 2   FDSLSEKLESVFKKLRGQGVMTEDNIKEALREVRLALLEADVNFKVVKDFVESVRAKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V++ +  ++           +  P  +++VG+ G GKTT  GKL
Sbjct: 62  TEVLQSLSPGQQVVKIVNDELVAIMGGHEDNSINLAAKPPVSLMMVGLQGAGKTTTCGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +     + +L   D +R AAIDQLKI   +       S        +   A K A+ 
Sbjct: 122 ALHLRGRKRRPLLVPADVYRPAAIDQLKIVGKQLGVAVFDSSADQKPVDICSAAMKFAEL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DTAGR   +  LM  + ++   +       P  +L V DA TGQ A+     
Sbjct: 182 NGFDTVILDTAGRHQIDDFLMGELAEINETI------RPAEILFVADAMTGQEAVNVAAG 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+I+TKMDG A+GG  + I      PV F+G+GE ++ LE F A    + I 
Sbjct: 236 FNDRLGITGVILTKMDGDAKGGAALSIKAVTGKPVKFVGMGEKLDALEVFHADRLVSRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|327460366|gb|EGF06703.1| signal recognition particle protein [Streptococcus sanguinis
           SK1057]
          Length = 524

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISENDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      ++++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARLLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEIPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|307708829|ref|ZP_07645291.1| signal recognition particle protein [Streptococcus mitis NCTC
           12261]
 gi|307615195|gb|EFN94406.1| signal recognition particle protein [Streptococcus mitis NCTC
           12261]
          Length = 523

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVDIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA   D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QANHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNTQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|56752330|ref|YP_173031.1| signal recognition particle receptor [Synechococcus elongatus PCC
           6301]
 gi|56687289|dbj|BAD80511.1| signal recognition particle receptor [Synechococcus elongatus PCC
           6301]
          Length = 496

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++  T +    ++ +       +E+   L+ +D+ + V ++ + ++  K   
Sbjct: 13  FDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAVG 72

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+ +  V + + +++     P     +  P VIL+ G+ G GKTT   KL
Sbjct: 73  TQVISGIRPDQQFIKVVYDELVQVMGETHVPL-AQAAKAPTVILMAGLQGAGKTTATAKL 131

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAIDQL     +           ++   +A +  ++A+ 
Sbjct: 132 ALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKARQ 191

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D +I+DTAGRL  ++ +M  + ++   +      APH VL V+D+  GQ A      
Sbjct: 192 EGIDTVIVDTAGRLQIDTEMMEELAQVKEAI------APHEVLLVVDSMIGQEAPSLTRS 245

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TK+DG +RGG  + I      P+ F+G+GE +  L+PF  +  ++ I 
Sbjct: 246 FHERIGITGAILTKLDGDSRGGAALSIRRVSGHPIKFVGLGEKVEALQPFHPERMASRIL 305

Query: 312 GCLD 315
           G  D
Sbjct: 306 GMGD 309


>gi|182684220|ref|YP_001835967.1| signal recognition particle protein [Streptococcus pneumoniae
           CGSP14]
 gi|182629554|gb|ACB90502.1| signal recognition particle protein [Streptococcus pneumoniae
           CGSP14]
          Length = 523

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+     +    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKSLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLQKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|323340723|ref|ZP_08080975.1| cell division protein FtsY [Lactobacillus ruminis ATCC 25644]
 gi|323091846|gb|EFZ34466.1| cell division protein FtsY [Lactobacillus ruminis ATCC 25644]
          Length = 433

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 121/311 (38%), Positives = 173/311 (55%), Gaps = 5/311 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S  K   E  +   +  KG A +       I  ++++ R +D+   ++LE+ LI +D+G 
Sbjct: 111 SASKDVLEEKTEEERYDKGLAKSRKGFGAKINALLANFRHVDEDFFDDLEETLIEADVGY 170

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILV 116
             A  I +EL  +   ++   +  + D        L   S     +        P V L 
Sbjct: 171 ETAMNISDELRDEVKLRNAKKKSDVSDAIIERLVNLYEESGKGEDNALHFAKQGPTVFLF 230

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ +  + G KV+LAAGDTFR+ AI+QL  W  R   D V     S
Sbjct: 231 VGVNGVGKTTTIGKLAHRYKEEGKKVLLAAGDTFRAGAIEQLAEWGRRVGVDVVKKPEQS 290

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A  +A+ +  D+L++DTAGRL N   LM  + K+ RV+ R  P APH VL  
Sbjct: 291 DPAAVVYDAVVKAKQENYDILLVDTAGRLQNKVNLMKELDKIKRVITREIPDAPHEVLLA 350

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL Q + F  V   TG+++TK+DGTARGG ++ I    K+PV  +G+GE ++
Sbjct: 351 LDATTGQNALTQAKQFKEVTDVTGIVLTKLDGTARGGIVLAIRNELKLPVKLVGLGEQMD 410

Query: 297 DLEPFVAKDFS 307
           DL  F  ++F 
Sbjct: 411 DLRDFDPQEFV 421


>gi|305667746|ref|YP_003864033.1| putative recognition particle-docking protein [Maribacter sp.
           HTCC2170]
 gi|88707583|gb|EAQ99825.1| putative recognition particle-docking protein [Maribacter sp.
           HTCC2170]
          Length = 318

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 121/300 (40%), Positives = 177/300 (59%), Gaps = 6/300 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             L KG   +       ++  ++ + ++DD V + LE++L+ SD+GV    KI+E +  +
Sbjct: 14  ESLDKGLEKSKTSFFSKLSKAVAGKSKVDDDVLDNLEEVLVTSDVGVDTTLKIIERIEAR 73

Query: 74  RYA-KDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
               K +    +   + E I  +L          ++     +P+VI+VVGVNGVGKTT I
Sbjct: 74  VSEDKYMGTDELNKILREEIAGLLSETNIGEETEYSIPADKKPYVIMVVGVNGVGKTTTI 133

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +    GLKV+L A DTFR+AAIDQL++WADR     V  ++GSD A++A++    
Sbjct: 134 GKLAYQFKKQGLKVVLGAADTFRAAAIDQLQVWADRVDVPIVKQKMGSDPASVAFDTLSS 193

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A  +  DV+IIDTAGRLHN   LM  + K+ RV++++    PH VL VLD +TGQNA  Q
Sbjct: 194 AVTQDADVVIIDTAGRLHNKVNLMNELTKVKRVMQKVVDDTPHDVLLVLDGSTGQNAFEQ 253

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      T L +TK+DGTA+GG +I I    +IPV ++GVGEGI DL+ F   +F  
Sbjct: 254 AKQFTKATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEFVD 313


>gi|319953950|ref|YP_004165217.1| signal recognition particle-docking protein ftsy [Cellulophaga
           algicola DSM 14237]
 gi|319422610|gb|ADV49719.1| signal recognition particle-docking protein FtsY [Cellulophaga
           algicola DSM 14237]
          Length = 319

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 123/298 (41%), Positives = 175/298 (58%), Gaps = 6/298 (2%)

Query: 17  LTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   +       +   +    ++DD V + LE++L+ SD+GV    KI++ +  +  
Sbjct: 16  LDKGLEKSKTSFFGKLGKAVAGKSKVDDDVLDNLEEVLVASDVGVNTTLKIIKGIEARVA 75

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K V    +   + E I ++L   +      F      +P+VI+VVGVNGVGKTT IGK
Sbjct: 76  KDKYVGTDELNEILREEIARLLSETNSGEDVEFTIPKDKKPYVIMVVGVNGVGKTTTIGK 135

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    G KV+L AGDTFR+AAIDQL+IWADR     +  ++GSD A++A++    A 
Sbjct: 136 LAYQFKKQGYKVVLGAGDTFRAAAIDQLQIWADRVGVPIIKQQMGSDPASVAFDTLSSAV 195

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+IIDTAGRLHN   LM  + K+ RV++++ P  P+ VL VLD +TGQNA  Q +
Sbjct: 196 KSDADVVIIDTAGRLHNKINLMNELSKVSRVMQKVVPDTPNDVLLVLDGSTGQNAFEQAK 255

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            F      T L +TK+DGTA+GG +I I    KIPV ++GVGEGI DL+ F   +F  
Sbjct: 256 QFTKATNVTSLAVTKLDGTAKGGVVIGISDQFKIPVRYIGVGEGIEDLQVFNKYEFVD 313


>gi|325685920|gb|EGD27985.1| signal recognition particle protein Ffh [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 476

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L++ + ++    ++ +        E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFENLSERLQKALRNLTGKGKISEEDINAASREIRLALLEADVNFKVVKDFIKTIKKRAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E + KM+   +        H P VI++VG+ G GKTT +GK
Sbjct: 62  GQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-PHIPTVIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++  +   +  L AGD +R AAIDQL+                   A +  +   +A
Sbjct: 121 LAYRLMKEEKARPFLIAGDIYRPAAIDQLEQIGADLKVPVYSDPEEKSVAKIVEDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              + D +IIDTAGRL  +  LM  + ++  V        P ++L V+DA TGQ A    
Sbjct: 181 AVHRNDYVIIDTAGRLEIDEPLMKELEEVKAV------AQPDNILLVVDAMTGQAAADVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG  RGG  + I      P+ F G GE + DLE F     ++ 
Sbjct: 235 KTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEKLTDLEVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|148994098|ref|ZP_01823438.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489114|ref|ZP_02713313.1| signal recognition particle protein [Streptococcus pneumoniae
           SP195]
 gi|147927451|gb|EDK78480.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572579|gb|EDT93107.1| signal recognition particle protein [Streptococcus pneumoniae
           SP195]
          Length = 523

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVCHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|199597126|ref|ZP_03210558.1| Signal recognition particle GTPase [Lactobacillus rhamnosus HN001]
 gi|258508639|ref|YP_003171390.1| signal recognition particle protein [Lactobacillus rhamnosus GG]
 gi|199591930|gb|EDZ00005.1| Signal recognition particle GTPase [Lactobacillus rhamnosus HN001]
 gi|257148566|emb|CAR87539.1| Signal recognition particle protein [Lactobacillus rhamnosus GG]
 gi|259649945|dbj|BAI42107.1| signal recognition particle protein [Lactobacillus rhamnosus GG]
          Length = 478

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L++  + +    ++ +  VR+   E+   L+ +D+   V +  ++ + TK  
Sbjct: 2   AFEGLSERLQKAFSGLRRKGKVSESDVRDAMREIRLALLEADVNFDVVKTFIKNVRTKAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + K +   + P N    H P VI++ G+ G GKTT +GK
Sbjct: 62  GSEVLESLTPAQQIIKIVNDELVKTMGEAAVPLN-KAPHIPTVIMMAGLQGAGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK +  +   + +L A D +R AAIDQL+    + +         +D   +  +    A
Sbjct: 121 LSKYLMENEKARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDTDPVEIVRQGLATA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  K D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA TGQ A+   
Sbjct: 181 KENKNDYVLIDTAGRLQIDEKLMTELKNIKEL------AHPNDILLVVDAMTGQAAVDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F     +  
Sbjct: 235 KGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALDVFYPDRMANR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|280987222|gb|ADA00385.1| signal recognition particle protein SRP [Anabaena sp. 90]
          Length = 482

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 151/308 (49%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L+    S   KL+    D IS   + D +RE +   L+ +D+ + V +  + E+ T
Sbjct: 1   MFDALSDRLESAWKKLRGQ--DKISQSNIQDALRE-VRRALLEADVNLQVVKDFISEVET 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K    +V       Q+ +  V + + +++   + P   + + +  V+L+ G+ G GKTT 
Sbjct: 58  KAQGAEVIAGVRPDQQFIKIVYDELVQVMGEENVPL-AEVAGKTTVVLMAGLQGTGKTTA 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+  +       +L A D +R AAIDQL     +         I +D   +A +  +
Sbjct: 117 TAKLALHLRKQDRSCLLVATDIYRPAAIDQLITLGKQIDVPVFELGIAADPVEIARQGVE 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+A+ ++ +IIDTAGRL  +  +MA + ++  V++      P   L V+DA TGQ A  
Sbjct: 177 RARAEGINTVIIDTAGRLQIDEDMMAELARIKEVVQ------PDETLLVVDAMTGQEAAN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               FH   G TG I+TKMDG +RGG  + +      P+ F+GVGE +  L+PF     +
Sbjct: 231 LTRTFHNQIGITGAILTKMDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPDRMA 290

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 291 SRILGMGD 298


>gi|295397859|ref|ZP_06807922.1| cell division protein FtsY [Aerococcus viridans ATCC 11563]
 gi|294973904|gb|EFG49668.1| cell division protein FtsY [Aerococcus viridans ATCC 11563]
          Length = 341

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 119/319 (37%), Positives = 176/319 (55%), Gaps = 12/319 (3%)

Query: 3   NQKVASESLSW----IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSD 57
            Q+  SES S       K  KG   T     + + ++ +  R++DD   ++LE+  I SD
Sbjct: 19  EQQRQSESPSQDQIVFEKYDKGVEKTRRSFSDRMNELFAGFRQVDDEFFDDLEETFISSD 78

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPH 112
           +G  +   + + +  +   +       + DV  +I KM+    K    +         P 
Sbjct: 79  VGFDMTLALSDAVREEVQRRGAISGEQVKDV--IIEKMVEIYDKGGEPNVEINENPDGPT 136

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V+L VGVNGVGKTT IGK++ ++   G KV+LAAGDTFR+ AI+QL+ WA R     V  
Sbjct: 137 VVLFVGVNGVGKTTTIGKMAYQLKQDGKKVLLAAGDTFRAGAIEQLEEWARRIDVPIVTG 196

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +   D A++A++A K A+    D L++DTAGRL     LM  + KM R+L R  P +PH 
Sbjct: 197 KAQGDPASVAFDAAKTAREGGYDYLLVDTAGRLQTKINLMNELDKMKRILTRELPGSPHE 256

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L VLDATTGQNAL Q + F       G+++TK+DGTA+GG +  I     IPV F+G+G
Sbjct: 257 ILLVLDATTGQNALVQAKEFDKTVDIDGIVLTKLDGTAKGGVIFAIRYEMDIPVKFIGLG 316

Query: 293 EGINDLEPFVAKDFSAVIT 311
           E ++DL+ F A+ F   + 
Sbjct: 317 EKVDDLQVFDAEKFIYQLI 335


>gi|269140194|ref|YP_003296895.1| signal recognition particle protein [Edwardsiella tarda EIB202]
 gi|267985855|gb|ACY85684.1| signal recognition particle protein [Edwardsiella tarda EIB202]
 gi|304560025|gb|ADM42689.1| Signal recognition particle, subunit Ffh SRP54 [Edwardsiella tarda
           FL6-60]
          Length = 453

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +        E+   L+ +D+ + V ++ +  +      
Sbjct: 2   FENLSDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFISRVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V + + + +   +   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVNKSLTPGQEFVKIVQDELTRAMGEANTELNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A     DF  S++      +   A   A+
Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVGVDFFPSDVQERPLDIVQRALTHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A     
Sbjct: 181 QKFYDVLIVDTAGRLHVDEAMMDEIKQIHAAIN------PVETLFVVDAMTGQDAANTAS 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNQALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|87301099|ref|ZP_01083940.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH
           5701]
 gi|87284067|gb|EAQ76020.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH
           5701]
          Length = 492

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    R+ +    G  +++   L+ +D+ + V +  +EE+ T+   
Sbjct: 2   FDELSQRFEDAVKSLKGQDRITESNVEGALKQVRRALLEADVSLEVVKGFIEEVRTQAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + +++   + P        P VIL+ G+ G GKTT   KL
Sbjct: 62  AEVVRGVSPDQQFIQLVHQALVEVMGGENAPLAV-ADQAPTVILMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + + G + ++ A D +R AAIDQL+    +   +       +    +A     +A+ 
Sbjct: 121 GLHLKEQGKRALMVAADVYRPAAIDQLQTLGQQIGVEVFSLGADARPEDIAAAGIARAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D +++DTAGRL  ++ +M  + ++ +        AP  VL V+D+  GQ A      
Sbjct: 181 EGFDTVLVDTAGRLQIDTAMMEEMVRIRQA------AAPDEVLLVVDSMIGQEAAELTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHEQVGLTGAVLTKLDGDSRGGAALSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|149007045|ref|ZP_01830714.1| signal recognition particle protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|168484497|ref|ZP_02709449.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC1873-00]
 gi|307127122|ref|YP_003879153.1| signal recognition particle protein [Streptococcus pneumoniae
           670-6B]
 gi|147761349|gb|EDK68315.1| signal recognition particle protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|172042260|gb|EDT50306.1| signal recognition particle protein [Streptococcus pneumoniae
           CDC1873-00]
 gi|306484184|gb|ADM91053.1| signal recognition particle protein [Streptococcus pneumoniae
           670-6B]
 gi|332074621|gb|EGI85095.1| signal recognition particle protein [Streptococcus pneumoniae
           GA17545]
 gi|332201751|gb|EGJ15821.1| signal recognition particle protein [Streptococcus pneumoniae
           GA47368]
          Length = 523

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKTL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|229025286|ref|ZP_04181706.1| Signal recognition particle protein [Bacillus cereus AH1272]
 gi|228736039|gb|EEL86614.1| Signal recognition particle protein [Bacillus cereus AH1272]
          Length = 449

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFIKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKIVQEELTELMGGEQSKIAV-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKYNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ +E F  +  ++ 
Sbjct: 235 QSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|1850607|gb|AAB48050.1|AAB48050 Ffh [Streptococcus mutans]
          Length = 516

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++   R+L +     V +E+   L+ +D+ + V ++ ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E +  +L   +       S  P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLKI   + +           A  +  +   QA
Sbjct: 121 LANKLVKEENARPLMIAADIYRPAAIDQLKILGQQINVPVFDMGTEHSAVEIVSQGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 KENRNDYVLIDTAGRLQIDEKLMTELRDIKALAN------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|167756882|ref|ZP_02429009.1| hypothetical protein CLORAM_02431 [Clostridium ramosum DSM 1402]
 gi|237734592|ref|ZP_04565073.1| signal recognition particle GTPase [Mollicutes bacterium D7]
 gi|167703057|gb|EDS17636.1| hypothetical protein CLORAM_02431 [Clostridium ramosum DSM 1402]
 gi|229382412|gb|EEO32503.1| signal recognition particle GTPase [Coprobacillus sp. D7]
          Length = 464

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 150/306 (49%), Gaps = 18/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L+  +  +    RL +     +  E+   L+ +D+   V ++ +     K  
Sbjct: 2   AFDSLSERLQGTLKKVSGQGRLTEKNMEEMLSEIRLALLEADVNFQVVKEFIAATKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V + +  +L   +     DF  +P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVLGSLKPGQVVVKIVHDELVSLLG--TSVAEVDFDKKPTVIMMVGLQGSGKTTTSGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++K ++   G K +L A D +R AA+DQLK   ++ +           A ++  EA   A
Sbjct: 120 IAKLITKKYGKKPLLVAADIYRPAAVDQLKTLGEQLNVPVYEKGTSQSAESIVEEAMTFA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DV+IIDTAGRLH +  LM  +  + ++        P  +L V+DA TGQ+ +   
Sbjct: 180 RDHNNDVIIIDTAGRLHIDEPLMNELANIKKI------AHPSEILLVVDALTGQDIVNVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG ++TK+DG +RGGG + I     +P+ F+G GE ++ ++ F     +  
Sbjct: 234 SSFNEQLSITGAVLTKLDGDSRGGGALSIRHITNVPIKFIGTGEKLDAIDLFYPDRMADR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|271963361|ref|YP_003337557.1| signal recognition particle subunit FFH/SRP54 (SRP54)
           [Streptosporangium roseum DSM 43021]
 gi|270506536|gb|ACZ84814.1| signal recognition particle subunit FFH/SRP54 (SRP54)
           [Streptosporangium roseum DSM 43021]
          Length = 516

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 150/307 (48%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L    + + S  RL +   +    E+   L+ +D+ + V +  V ++  +   
Sbjct: 2   FETLSDRLTSVFSSLRSKGRLSEADIDATCREIRIALLEADVALPVVKTFVAQVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V++ + ++L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSQALNPAQQVVKIVNDELIEILGGETRRLRY-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++ + D     ML A D  R  A+ QL++ A+R        E G+   D   +A ++   
Sbjct: 121 ARWLRDQNHAPMLVAADLQRPNAVQQLQVMAERAGVAVYAPEPGNGVGDPIEVARQSIDH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ ++ D++IIDTAGRL  +  LM     +       D  +P  VL V+DA  GQ+A+  
Sbjct: 181 ARRQQHDIVIIDTAGRLGIDQELMKQAADI------RDAVSPDEVLFVVDAMIGQDAVST 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G  G+++TK+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 AQAFMEGVGFDGVVLTKLDGDARGGAALSVRHITGKPIMFASTGEKLEDFDAFHPDRMAS 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|149012344|ref|ZP_01833413.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP19-BS75]
 gi|169832782|ref|YP_001694736.1| signal recognition particle protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225854751|ref|YP_002736263.1| signal recognition particle protein [Streptococcus pneumoniae JJA]
 gi|303261607|ref|ZP_07347554.1| signal recognition particle protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|303267279|ref|ZP_07353142.1| signal recognition particle protein [Streptococcus pneumoniae
           BS457]
 gi|303268434|ref|ZP_07354229.1| signal recognition particle protein [Streptococcus pneumoniae
           BS458]
 gi|147763670|gb|EDK70605.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP19-BS75]
 gi|168995284|gb|ACA35896.1| signal recognition particle protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225723340|gb|ACO19193.1| signal recognition particle protein [Streptococcus pneumoniae JJA]
 gi|301802076|emb|CBW34809.1| signal recognition particle protein [Streptococcus pneumoniae
           INV200]
 gi|302637187|gb|EFL67675.1| signal recognition particle protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|302642040|gb|EFL72392.1| signal recognition particle protein [Streptococcus pneumoniae
           BS458]
 gi|302643206|gb|EFL73490.1| signal recognition particle protein [Streptococcus pneumoniae
           BS457]
          Length = 523

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 141/307 (45%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+     +    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKSLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|113955128|ref|YP_729980.1| signal recognition particle protein [Synechococcus sp. CC9311]
 gi|113882479|gb|ABI47437.1| signal recognition particle protein [Synechococcus sp. CC9311]
          Length = 493

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +     + D    G  +E+   L+ +D+ + V +  V E+  K   
Sbjct: 2   FDELSARFEDAVKGLRGQDTISDTNVEGALKEVRRALLEADVSLPVVKDFVSEVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V E +  ++   + P        P V+L+ G+ G GKTT   KL
Sbjct: 62  AEVVRGVTPDQKFIQVVHEQLVDVMGGGNAPL-AQADQAPTVVLMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + D G K ++   D +R AAI+QLK    +   D     I +    +A     +A+ 
Sbjct: 121 GLHLKDQGRKALMVGADVYRPAAIEQLKTLGGQIGVDVFSLGIEAKPEDIAAAGLAKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D L++DTAGRL  +S +M  + ++   ++      P  VL V+D+  GQ A      
Sbjct: 181 EGYDTLLVDTAGRLQIDSEMMEEMVRIRSAVQ------PDEVLLVVDSMIGQEAAELTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHDQVGITGAVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|238785845|ref|ZP_04629814.1| Signal recognition particle protein [Yersinia bercovieri ATCC
           43970]
 gi|238713258|gb|EEQ05301.1| Signal recognition particle protein [Yersinia bercovieri ATCC
           43970]
          Length = 453

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELIAAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A + S DF  S++      +   A +QA+
Sbjct: 121 GKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQQVSIDFFPSDVQEKPIDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQIHGAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|59711155|ref|YP_203931.1| Signal recognition particle (SRP) component with 4.5S RNA (ffs)
           [Vibrio fischeri ES114]
 gi|59479256|gb|AAW85043.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Vibrio fischeri ES114]
          Length = 457

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  V+ +      
Sbjct: 2   FDNLTDRLSRTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFVKRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N      P VIL+ G+ G GKTT  GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQAELEAVMGDSNEALNLAC-QPPAVILMAGLQGAGKTTSTGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S        +   A   A+
Sbjct: 121 AKLLKERDKKKVLVVSADVYRPAAIKQLETLAADVDVDFFPSSADQKPIDIVDAAISHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRL  ++ +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFFDVVIVDTAGRLAVDTEMMDEIKQLHAHVN------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      PV FLGVGE  + LEPF  +  ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPVKFLGVGEKTDALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|312866548|ref|ZP_07726763.1| signal recognition particle protein [Streptococcus parasanguinis
           F0405]
 gi|311097847|gb|EFQ56076.1| signal recognition particle protein [Streptococcus parasanguinis
           F0405]
          Length = 518

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISEADVQEATKEIRLALLEADVALPVVKDFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIETLNPAQQIVKIVDEELTAILGSETAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFSLGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  + +      P+ +L V+DA  GQ A    
Sbjct: 181 RANHNDYVLIDTAGRLQIDEKLMGELRDVKALAE------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S  
Sbjct: 235 REFNEQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSGR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|322389552|ref|ZP_08063102.1| signal recognition particle protein [Streptococcus parasanguinis
           ATCC 903]
 gi|321143746|gb|EFX39174.1| signal recognition particle protein [Streptococcus parasanguinis
           ATCC 903]
          Length = 523

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISEPDVQEATKEIRLALLEADVALPVVKDFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIETLNPAQQIVKIVDEELTAILGSETAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFSLGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  + +      P+ +L V+DA  GQ A    
Sbjct: 181 RANHNDYVLIDTAGRLQIDEKLMGELRDVKALAE------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S  
Sbjct: 235 REFNEQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSGR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|52424574|ref|YP_087711.1| Ffh protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306626|gb|AAU37126.1| Ffh protein [Mannheimia succiniciproducens MBEL55E]
          Length = 463

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V + +   +   ++  N   S  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQKELESAMGESNESLNL-ASQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A    ADF  S++  +   +A  A   A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLETLAQSVDADFFPSDVKKNPVDIAKAALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++  VL       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDGEMMDEIKRIHEVLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|223932139|ref|ZP_03624143.1| signal recognition particle protein [Streptococcus suis 89/1591]
 gi|302023761|ref|ZP_07248972.1| signal recognition particle protein [Streptococcus suis 05HAS68]
 gi|330832793|ref|YP_004401618.1| signal recognition particle protein [Streptococcus suis ST3]
 gi|223899120|gb|EEF65477.1| signal recognition particle protein [Streptococcus suis 89/1591]
 gi|329307016|gb|AEB81432.1| signal recognition particle protein [Streptococcus suis ST3]
          Length = 524

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 141/307 (45%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDIQEATKEIRLALLEADVALPVVKDFIKKVRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++ G+ G GKTT  GK
Sbjct: 62  GHEVIETLNPAQQIIKIVDEELTAVLGSETSEI-IKSPKIPTIIMMAGLQGAGKTTFTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + +L A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKQEENARPLLIAADIYRPAAIDQLKTLGQQIDVPVFELGNQVPALEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LMA + ++           P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDQALMAELREIKEF------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNDQLAITGVILTKIDGDTRGGAALSVRHITGQPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|104774249|ref|YP_619229.1| Signal recognition particle protein Ffh [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514339|ref|YP_813245.1| Signal recognition particle GTPase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|103423330|emb|CAI98173.1| Signal recognition particle protein Ffh [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093654|gb|ABJ58807.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 476

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L++ + ++    ++ +        E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFENLSERLQKALRNLTGKGKISEEDINAASREIRLALLEADVNFKVVKDFIKTIKKRAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E + KM+   +        H P VI++VG+ G GKTT +GK
Sbjct: 62  GQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-PHIPTVIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++  +   +  L AGD +R AAIDQLK                   A +  +   +A
Sbjct: 121 LAYRLMKEEKARPFLIAGDIYRPAAIDQLKQIGADLKVPVYSDPEEKSVAKIVEDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              + D +IIDTAGRL  +  LM  + ++  V        P ++L V+DA TGQ A    
Sbjct: 181 AVHRNDYVIIDTAGRLEIDEPLMKELEEVKAV------SQPDNILLVVDAMTGQVAADVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG  RGG  + I      P+ F G GE + DLE F     ++ 
Sbjct: 235 KTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEKLTDLEVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|229552446|ref|ZP_04441171.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539816|ref|YP_003174315.1| signal recognition particle protein [Lactobacillus rhamnosus Lc
           705]
 gi|229314183|gb|EEN80156.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151492|emb|CAR90464.1| Signal recognition particle protein [Lactobacillus rhamnosus Lc
           705]
          Length = 478

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 150/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L++  + +    ++ +  VR+   E+   L+ +D+   V +  ++ + TK  
Sbjct: 2   AFEGLSERLQKAFSGLRRKGKVSESDVRDAMREIRLALLEADVNFDVVKTFIKNVRTKAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + K +   + P N    H P VI++ G+ G GKTT +GK
Sbjct: 62  GSEVLESLTPAQQIIKIVNDELVKTMGEAAVPLN-KAPHIPTVIMMAGLQGAGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK +  +   + +L A D +R AAIDQL+    + +         +D   +  +    A
Sbjct: 121 LSKYLMENEKARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDTDPVEIVRQGLATA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  K D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA TGQ A+   
Sbjct: 181 KENKNDYVLIDTAGRLQIDEKLMTELKNIKEL------AHPNDILLVVDAMTGQAAVDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F     +  
Sbjct: 235 KGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALDVFYPDRMANR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|221633791|ref|YP_002523017.1| signal recognition particle protein [Thermomicrobium roseum DSM
           5159]
 gi|221156000|gb|ACM05127.1| signal recognition particle protein [Thermomicrobium roseum DSM
           5159]
          Length = 488

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L +    I    RL     D    E+   L+ +D+   V +  +  +  +   
Sbjct: 2   FEALTDRLTQVFQRIGRKGRLTEEDVDEALREVRRALLEADVHYTVVRDFIAAVRERAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + + ++L     P  W  S  P +I++VG+ G GKTT + KL
Sbjct: 62  EEVLRSLTPAQQVIAIVHQELVRVLGSERVPLLW-ASQPPTIIMLVGLQGSGKTTQVAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              +   G + +L A D +R AA++QL+    +            D       A K A+ 
Sbjct: 121 GYHLRKEGRRPLLVAADIYRPAAVEQLRTLGKQHDLPVYDEGTKVDPVETVKHAVKVARD 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  + +IIDTAGRL  +  +M  + +M   +       P  +L V DA TGQ A+   + 
Sbjct: 181 QGYNPVIIDTAGRLQIDEPMMQELERMAEAV------RPTEILLVADAMTGQEAVNVAKE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     TGLI+TK+DG ARGG  + I     +P+ F+G GE ++ LEPF     +  I 
Sbjct: 235 FHRRLSLTGLILTKLDGDARGGAALSIRAVVGVPIKFIGTGERVDALEPFYPDRLATRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|332361212|gb|EGJ39016.1| signal recognition particle protein [Streptococcus sanguinis
           SK1056]
          Length = 524

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLHRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|325269254|ref|ZP_08135873.1| cell division protein FtsY [Prevotella multiformis DSM 16608]
 gi|324988483|gb|EGC20447.1| cell division protein FtsY [Prevotella multiformis DSM 16608]
          Length = 316

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 123/301 (40%), Positives = 180/301 (59%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T   +   +   ++ + ++DD V ++LE++L+ SD+GV    KI+  +  +  
Sbjct: 15  LDKGLEKTKQNVFSKLARAVAGKSKVDDEVLDDLEEILVTSDVGVDTTIKIIHRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----PHVILVVGVNGVGKTTVIGK 130
             K VS   +   +   I  +L   +   N D+       P+VILVVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTNELNDILKSEITALLTENNTGSNSDWVLPEHAHPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV L A DTFR+AA++Q++IW DR     +  ++G+D A++A++  + A+
Sbjct: 135 LAYQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVIKQQMGADPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +TGQNA  Q  
Sbjct: 195 ANGADVVIIDTAGRLHNKIGLMNELKKIKDVMKKVVPDAPHEVLLVLDGSTGQNAFEQAR 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F    F   +
Sbjct: 255 QFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFDKAQFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|260550989|ref|ZP_05825194.1| signal recognition particle protein [Acinetobacter sp. RUH2624]
 gi|260405937|gb|EEW99424.1| signal recognition particle protein [Acinetobacter sp. RUH2624]
          Length = 469

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ-----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V  Q       +  V + + KM+   ++  +   +  P V+L+ G+ G GKTT   KL
Sbjct: 62  QEVMTQLSPGQAFVKIVYDELTKMMGEANETLDLS-AKPPVVVLLAGLQGAGKTTTAAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM  + D +R AAI QL+  +    A F+ S+       +   A +QA+
Sbjct: 121 ARFLKERQKKKVMTVSADVYRPAAIKQLETVSTEVGAGFIPSDPSEKPIDIVNRAIEQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 IQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF     +  I
Sbjct: 235 AFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPDRVAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|325680130|ref|ZP_08159696.1| signal recognition particle protein [Ruminococcus albus 8]
 gi|324108205|gb|EGC02455.1| signal recognition particle protein [Ruminococcus albus 8]
          Length = 457

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S KL      +    +L +  VRE   E++  L+ +D+   V +  V  +  +  
Sbjct: 2   AFEGLSEKLGSVFKKLKGRGKLTEADVREAMKEVKMALLEADVSYKVVKDFVANVTERSV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V++ + K++   +   N+  S  P VI++ G+ G GKTT   K
Sbjct: 62  GEDVLKSLTPGQQVIKIVNDELVKLMGEANSKINFP-SKPPCVIMMCGLQGSGKTTHAAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K     G + +L A D +R AAIDQLKI A++                +  +  KQA+
Sbjct: 121 LAKMFKRQGNRPLLIAADVYRPAAIDQLKIVAEKADVPVFEMGQID-PRKIVKQGLKQAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++IIDTAGRLH +  LM  +  + ++ +      P  ++ V+DA  GQ+A++   
Sbjct: 180 DYGNDLVIIDTAGRLHIDEELMDELKDIKKIAE------PSEIMLVVDAMIGQDAVKVAS 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G   +I+TK+D   RGG  + ++     P+ F+G+GE +++ EPF  +  ++ I
Sbjct: 234 SFDEALGIDSVILTKLDSDTRGGAALSVLAVTGKPIKFVGMGEKLDEFEPFHPERMASRI 293

Query: 311 TGCLDY 316
            G  D 
Sbjct: 294 LGMGDM 299


>gi|222097290|ref|YP_002531347.1| signal recognition particle protein [Bacillus cereus Q1]
 gi|221241348|gb|ACM14058.1| signal recognition particle protein [Bacillus cereus Q1]
          Length = 449

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTELMGGEQSKIAV-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + ++  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMDELAQVKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ LE F  +  ++ 
Sbjct: 235 QSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDALEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|301168764|emb|CBW28355.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Haemophilus influenzae 10810]
          Length = 462

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V  + + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVCEFIAKVKASALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EDVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDIEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|293607597|ref|ZP_06689931.1| cell division protein FtsY [Achromobacter piechaudii ATCC 43553]
 gi|292814030|gb|EFF73177.1| cell division protein FtsY [Achromobacter piechaudii ATCC 43553]
          Length = 353

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 181/308 (58%), Gaps = 11/308 (3%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           +  SW+ +L +G + T     + I  I    ++D+ + EELE  LI +D G+   +K++ 
Sbjct: 50  KKASWLSRLKQGLSRT----GQSIGGIFVGVKVDENLFEELESALIMADAGLEATEKLLT 105

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +   + +     +   + +L+   L PL + FN   S +P V+++ GVNG GKTT 
Sbjct: 106 ALRARVKKERIEDPAKVKTALRQLLADHLRPLERGFNL-TSAKPLVVMIAGVNGAGKTTS 164

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+      G  V+LAAGDTFR+AA +QL  W  R +   + S+ G D AA+A++A  
Sbjct: 165 IGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVSVI-SQDGGDPAAVAFDAVN 223

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A+ + V+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL 
Sbjct: 224 AGRARGMGVVMVDTAGRLPTQLHLMEELKKIRRVIGKADASAPHEVLLVVDGNTGQNALA 283

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVA 303
           Q+  F A    TGL++TK+DGTA+GG L  +    +    IPVY++GVGE + DL+PFVA
Sbjct: 284 QIRAFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGESLEDLQPFVA 343

Query: 304 KDFSAVIT 311
            +F+  + 
Sbjct: 344 DEFAGALL 351


>gi|88811310|ref|ZP_01126565.1| signal recognition particle receptor FtsY [Nitrococcus mobilis
           Nb-231]
 gi|88791199|gb|EAR22311.1| signal recognition particle receptor FtsY [Nitrococcus mobilis
           Nb-231]
          Length = 357

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 131/310 (42%), Positives = 189/310 (60%), Gaps = 8/310 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAV 62
           Q+  +    W+ +L  G   T      G + +   R+ +D+ + EELE LL+ +D+GV  
Sbjct: 44  QEEGAPRTGWLIRLHSGLRKT----GSGFSSLFLGRKAIDEELLEELETLLLMADVGVEA 99

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            Q IV+ L  +     ++    L + + + +  +L P ++    D    P+V+L VGVNG
Sbjct: 100 TQCIVDNLTERLKRNQLADAMALQNALRDEMIAILAPCTQALVIDT--HPYVMLTVGVNG 157

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL +++ D G +VMLAAGDTFR+AA++QLKIW +R     +    GSDAA++
Sbjct: 158 VGKTTTIGKLGRRLQDNGYEVMLAAGDTFRAAAVEQLKIWGERGDIPVIAQPTGSDAASV 217

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A + A A+ +DVLI DTAGRLH  S LM  + K+ RVL + D  APH VL V+DA+T
Sbjct: 218 IYDAHQAAFARGIDVLIADTAGRLHTQSNLMEELKKIKRVLSKQDSSAPHEVLLVVDAST 277

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q   FHA  G TG+ +TK+DGTA+GG +  I     +P+  +GVGE + DL PF
Sbjct: 278 GQNALAQARQFHAAVGVTGIALTKLDGTAKGGVIFAIAQQLGLPIRCIGVGEQLEDLRPF 337

Query: 302 VAKDFSAVIT 311
            A++F   + 
Sbjct: 338 TAEEFVDALL 347


>gi|116333588|ref|YP_795115.1| Signal recognition particle GTPase [Lactobacillus brevis ATCC 367]
 gi|116098935|gb|ABJ64084.1| signal recognition particle-docking protein FtsY [Lactobacillus
           brevis ATCC 367]
          Length = 487

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 122/320 (38%), Positives = 184/320 (57%), Gaps = 11/320 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S  + + E L       KG   T     + +  ++++ R +D+   ++LE+ LI +D+G 
Sbjct: 166 SAPEASDEQL-----YDKGLEKTRTTFGQRLNALLANFRHVDESFFDDLEETLIGADVGF 220

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDFS---HRPHVILV 116
            +A K+ +EL  +   ++    + + +V  E + ++            +     P VIL 
Sbjct: 221 DMAVKLSDELRDEVKLQNAKKSQDVQNVVVEKLVEIYEAAGNHETTAINMAETGPTVILF 280

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGK++ +   AG KV+LAA DTFR+ A +QL +WA R   D V  +  S
Sbjct: 281 VGVNGVGKTTTIGKMANRYHQAGKKVLLAAADTFRAGATEQLDVWAKRADVDIVTGKPQS 340

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A ++A+    D+L +DTAGRL N   LM  + KM R++ R  P APH VL V
Sbjct: 341 DPAAVVFDAVQKAKQDDYDILFVDTAGRLQNKVNLMNELEKMKRIITREIPSAPHEVLLV 400

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL Q ++F      TG+++TK+DGTARGG ++ I     +PV F+G+GE I+
Sbjct: 401 LDATTGQNALTQAKLFKESTAVTGIVLTKLDGTARGGIVLAIRNELHVPVKFIGLGEQIS 460

Query: 297 DLEPFVAKDFSAVIT-GCLD 315
           DL PF   +F   +  G +D
Sbjct: 461 DLRPFDPNEFVYGLFKGLID 480


>gi|270292853|ref|ZP_06199064.1| signal recognition particle protein [Streptococcus sp. M143]
 gi|270278832|gb|EFA24678.1| signal recognition particle protein [Streptococcus sp. M143]
          Length = 523

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISEADVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKTL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|116623313|ref|YP_825469.1| signal recognition particle-docking protein FtsY [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116226475|gb|ABJ85184.1| signal recognition particle-docking protein FtsY [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 316

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 117/305 (38%), Positives = 175/305 (57%), Gaps = 1/305 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +  S + KL  G   T   L   + D +   + +D  + +ELE  LI +DIGVA   +I
Sbjct: 10  EQEPSLLEKLKSGVQKTRAGLVTALEDALQGKKEIDADLLDELEFTLISADIGVATTSEI 69

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E +  +     ++    L  +       ++  S+      +  P V+LVVGVNG GKTT
Sbjct: 70  LESIRQRVERHQLADAGELKGLIRERLLEILQASERAPARVAEPPAVVLVVGVNGAGKTT 129

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ +  +    V+L A DTFR+AAI+QL+IW +RT    +  + GSD +A+ ++A 
Sbjct: 130 TIGKLAHRFKNEQRSVLLCAADTFRAAAIEQLEIWGERTGTQVIRQKPGSDPSAVLFDAV 189

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+++KVD +I+DTAGRL     LM  + KM R  +++ P APH VL VLDATTGQN L
Sbjct: 190 TAAKSRKVDYVIVDTAGRLQTKEHLMLELEKMNRTARKVIPDAPHEVLLVLDATTGQNGL 249

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F   +G TG+++TK+DGTA+GG ++ I     +P+ ++GVGE I DL PF  + F
Sbjct: 250 EQARKFTGSSGVTGIVLTKLDGTAKGGIVVAIARELNLPIRYIGVGEKIEDLLPFDGEKF 309

Query: 307 SAVIT 311
              + 
Sbjct: 310 IESLF 314


>gi|303235657|ref|ZP_07322264.1| signal recognition particle-docking protein FtsY [Prevotella
           disiens FB035-09AN]
 gi|302484104|gb|EFL47092.1| signal recognition particle-docking protein FtsY [Prevotella
           disiens FB035-09AN]
          Length = 318

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 123/301 (40%), Positives = 182/301 (60%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG  +T   +   I   ++ + ++DD V + LE++LI SD+GV    KI+E +  +  
Sbjct: 15  LDKGLETTKQSVFSKIARAVAGKSKVDDEVLDNLEEILITSDVGVDTTVKIIERIEERIA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPF----NWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   +   I  +L   +       +    H+P+VIL+VGVNGVGKTT IGK
Sbjct: 75  RDKYVSTSELNDVLRAEIANLLTENNTENAEDWDLPTDHKPYVILIVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV L A DTFR+AA++Q++IW DR     +  ++GSD A++A++  + A+
Sbjct: 135 LAYQFKKAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVIKQQMGSDPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP  V+ VLD +TGQNA  Q +
Sbjct: 195 ANGADVVIIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPDDVMLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F +V   T L +TK+DGTA+GG +I I    K+PV ++G+GEGI DL+ F  + F   +
Sbjct: 255 QFASVTQITSLAITKLDGTAKGGVVIGISDQLKVPVRYIGLGEGIEDLQLFNKEQFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|227510448|ref|ZP_03940497.1| signal recognition particle protein Ffh [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227190100|gb|EEI70167.1| signal recognition particle protein Ffh [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 478

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  +  +    ++ +        E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLTERLQNAMKKLRGKGKVSEADLRATMREIRLALLEADVNFQVVRTFVKTVEERAK 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              V       Q+++  V E + K +   + P N      P VI++ G+ G GKTT +GK
Sbjct: 62  GAKVLEGLNPSQQIVKIVDEELTKTMGQEAVPLNKS-EKIPTVIMMSGLQGAGKTTTVGK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+ +    + +L A D +R AAI+QL+    +            D   +A    ++A
Sbjct: 121 LALKLKNEQNARPLLIADDVYRPAAIEQLQTVGQQVDVPVFQLGTDVDPVEIAKRGLEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +IIDTAGRL  +  LM  +  + + +       P  +L V+DA TGQNA+   
Sbjct: 181 KEDHNDYVIIDTAGRLQIDEKLMDELSNIKKAVN------PDEILLVIDAMTGQNAVATA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ 
Sbjct: 235 EGFDKTLDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFVGQGEKMEDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|29376252|ref|NP_815406.1| signal recognition particle protein [Enterococcus faecalis V583]
 gi|227518889|ref|ZP_03948938.1| signal recognition particle protein [Enterococcus faecalis TX0104]
 gi|256762629|ref|ZP_05503209.1| signal recognition particle protein [Enterococcus faecalis T3]
 gi|256961798|ref|ZP_05565969.1| signal recognition particle protein [Enterococcus faecalis Merz96]
 gi|256964995|ref|ZP_05569166.1| signal recognition particle protein [Enterococcus faecalis
           HIP11704]
 gi|257419425|ref|ZP_05596419.1| signal recognition particle protein [Enterococcus faecalis T11]
 gi|293382861|ref|ZP_06628779.1| signal recognition particle protein [Enterococcus faecalis R712]
 gi|293389652|ref|ZP_06634107.1| signal recognition particle protein [Enterococcus faecalis S613]
 gi|307273091|ref|ZP_07554337.1| signal recognition particle protein [Enterococcus faecalis TX0855]
 gi|312907668|ref|ZP_07766659.1| signal recognition particle protein [Enterococcus faecalis DAPTO
           512]
 gi|312910285|ref|ZP_07769132.1| signal recognition particle protein [Enterococcus faecalis DAPTO
           516]
 gi|29343715|gb|AAO81476.1| signal recognition particle protein [Enterococcus faecalis V583]
 gi|227073680|gb|EEI11643.1| signal recognition particle protein [Enterococcus faecalis TX0104]
 gi|256683880|gb|EEU23575.1| signal recognition particle protein [Enterococcus faecalis T3]
 gi|256952294|gb|EEU68926.1| signal recognition particle protein [Enterococcus faecalis Merz96]
 gi|256955491|gb|EEU72123.1| signal recognition particle protein [Enterococcus faecalis
           HIP11704]
 gi|257161253|gb|EEU91213.1| signal recognition particle protein [Enterococcus faecalis T11]
 gi|291079526|gb|EFE16890.1| signal recognition particle protein [Enterococcus faecalis R712]
 gi|291081045|gb|EFE18008.1| signal recognition particle protein [Enterococcus faecalis S613]
 gi|306510076|gb|EFM79100.1| signal recognition particle protein [Enterococcus faecalis TX0855]
 gi|310626696|gb|EFQ09979.1| signal recognition particle protein [Enterococcus faecalis DAPTO
           512]
 gi|311289558|gb|EFQ68114.1| signal recognition particle protein [Enterococcus faecalis DAPTO
           516]
 gi|315576091|gb|EFU88282.1| signal recognition particle protein [Enterococcus faecalis TX0309B]
 gi|315580665|gb|EFU92856.1| signal recognition particle protein [Enterococcus faecalis TX0309A]
 gi|327535264|gb|AEA94098.1| signal recognition particle protein [Enterococcus faecalis OG1RF]
          Length = 472

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +     +  E+   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E + K L   +   N      P VI++ G+ G GKTT  GK
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKS-PKIPTVIMMTGLQGAGKTTFTGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K +      + +L AGD +R AAIDQLK+   +           ++   +  +    A
Sbjct: 121 LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQLEVPVFDMGTDANPVEIVRQGLALA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D ++IDTAGRLH +  LM  + ++  +        P+ +L V+DA TGQ+A+   
Sbjct: 181 KEKKNDYVLIDTAGRLHIDEALMDELKQIKEL------ADPNEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     S+ 
Sbjct: 235 DSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|306833449|ref|ZP_07466576.1| signal recognition particle protein [Streptococcus bovis ATCC
           700338]
 gi|304424219|gb|EFM27358.1| signal recognition particle protein [Streptococcus bovis ATCC
           700338]
          Length = 521

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 144/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q+++  V+E + ++L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQIVKIVNEELTEILGSETAELEKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  D   + ++ A D +R AAIDQLK    + +           A  +      QA
Sbjct: 121 LANKLIKDENARPLMIAADIYRPAAIDQLKTLGSQINVPVFDMGTDHSAVEIVTNGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +IIDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 KENHNDYVIIDTAGRLQIDEKLMEELRDVKALAN------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 DEFNKQLDITGVVLTKIDGDTRGGAALSIREITSKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|326791391|ref|YP_004309212.1| signal recognition particle protein [Clostridium lentocellum DSM
           5427]
 gi|326542155|gb|ADZ84014.1| signal recognition particle protein [Clostridium lentocellum DSM
           5427]
          Length = 446

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S KL++    +    +L D        E++  L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFDQLSTKLQDVFKQLKGKGKLSDKDVKLALREVKLALLEADVNFKVVKQFIKTIEERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E +  ++       N+       VI++VG+ G GKTT   K
Sbjct: 62  GHEVMESLTPGQQVIKIVNEELINLMGSTQSKINFAPRGI-TVIMMVGLQGAGKTTTSAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS  +   G + +L A D +R AAIDQL     + +          +   +A      A+
Sbjct: 121 LSSHIKSQGKRPLLVACDVYRPAAIDQLTKVGKQVNVPVFSMGSDKNPVDIAQAGVNYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              +DV+IIDTAGRLH + +LM  +  +  ++K      P  +L V+DA TGQ+A+   E
Sbjct: 181 ENNLDVVIIDTAGRLHIDEVLMDELKNIKALVK------PQEILLVVDAMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G++MTK+DG +RGG  + +      P+ F+G+GE +NDLEPF  +  ++ I
Sbjct: 235 SFDQTLGLDGVVMTKLDGDSRGGAALSVKAVTNKPIKFVGMGEKLNDLEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|255009414|ref|ZP_05281540.1| putative recognition particle-docking protein [Bacteroides fragilis
           3_1_12]
 gi|313147173|ref|ZP_07809366.1| recognition particle-docking protein FtsY [Bacteroides fragilis
           3_1_12]
 gi|313135940|gb|EFR53300.1| recognition particle-docking protein FtsY [Bacteroides fragilis
           3_1_12]
          Length = 319

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 182/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I++ +  +    K V+ Q +   + E I  +L   +      F+     +P+VI+VVGVN
Sbjct: 65  IIKRIEKRAAEDKYVNTQELNSILREEIAALLTENNSDDVADFDVPVEKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   A   V L A DTFR+AA++QL IW DR     +  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKASKSVYLGAADTFRAAAVEQLVIWGDRVGVPVIKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +
Sbjct: 185 VAFDTLSSAVANDADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPDAPNEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F  K+F   + G
Sbjct: 305 FRKKEFVDSLFG 316


>gi|90408719|ref|ZP_01216867.1| signal recognition particle protein Ffh [Psychromonas sp. CNPT3]
 gi|90310170|gb|EAS38307.1| signal recognition particle protein Ffh [Psychromonas sp. CNPT3]
          Length = 469

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  I    RL +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FENLTERLSKTLKSISGKGRLTEDNIKSTLREVRMALLEADVALPVVKDFMKAVKKRALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  L  V   +   +   ++  N      P V+L+ G+ G GKTT + KL
Sbjct: 62  REVQKTLNPGQAFLKIVQTELELAMGESNESLNLAM-QPPAVLLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +     V++ + D +R AAI QL+  A     +F  S+I      +A  A   A+
Sbjct: 121 ALLLKNKEKKSVLVVSADVYRPAAIKQLQTLASEVDVEFFPSDISQKPIDIANAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH ++ +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFIDVVIVDTAGRLHVDTDMMKEIQDLHAAIS------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +   TG+I+TK DG ARGG  + I      P+ F+G+GE ++ LE F     ++ I
Sbjct: 235 AFNEMLPLTGIILTKADGDARGGAALSIRHITGKPIKFIGMGEKVDALEAFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|322418203|ref|YP_004197426.1| signal recognition particle protein [Geobacter sp. M18]
 gi|320124590|gb|ADW12150.1| signal recognition particle protein [Geobacter sp. M18]
          Length = 454

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 146/304 (48%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S KL      +     + ++ V++ L +    L+ +D+   V +  VE++ T+   
Sbjct: 2   FATLSDKLDLVFKKLRGQGVMTEENVKDALREVRLALLEADVNFKVVKDFVEKVRTRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V + +  ++           +  P  I++VG+ G GKTT  GKL
Sbjct: 62  TEVLQSLAPGQQVIKIVHDELVLLMGGSEDNSLDLAAKPPVAIMLVGLQGAGKTTSCGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +     K +L   D +R AAI+QLK+   +   +   S+       +  +A + A  
Sbjct: 122 ARYLKGQRKKPLLVPADVYRPAAIEQLKVLGRQLGIETFDSQSNQKPLDICRDAHRYATL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I DTAGR   +  LM  +  +       D  AP  +L V DA TGQ A+   + 
Sbjct: 182 NGFDVIIYDTAGRHQIDDYLMEELEGI------RDELAPREILFVADAMTGQEAVNVAQG 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+I+TK+DG A+GG  + I      PV F+G+GE ++ L+ F A    + I 
Sbjct: 236 FNDRLGITGVILTKLDGDAKGGAALSIKAVTGKPVKFVGLGEKLDALDVFHADRLVSRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|229587138|ref|YP_002845639.1| Signal recognition particle-docking protein FtsY [Rickettsia
           africae ESF-5]
 gi|228022188|gb|ACP53896.1| Signal recognition particle-docking protein FtsY [Rickettsia
           africae ESF-5]
          Length = 303

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 189/303 (62%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD G  E LE+LLI SD+ V V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAGTLEALEELLISSDMSVLVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L   + PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAKLIEQQLSKSAIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AA++QL  WADR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +++L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+DA TGQN   QVE
Sbjct: 181 KQNINILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSILVIDAITGQNTYNQVE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  +
Sbjct: 241 HFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARNL 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|148978164|ref|ZP_01814694.1| signal recognition particle GTPase [Vibrionales bacterium SWAT-3]
 gi|145962586|gb|EDK27862.1| signal recognition particle GTPase [Vibrionales bacterium SWAT-3]
          Length = 405

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V+ +      
Sbjct: 2   FDNLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVKRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQAELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK +++    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLTERDKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSSADQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRL  +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLLVDTAGRLAIDEEMMGEIQELHTAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|91774877|ref|YP_544633.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methylobacillus flagellatus KT]
 gi|91708864|gb|ABE48792.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methylobacillus flagellatus KT]
          Length = 450

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L++ +  +    RL +        E+   L+ +D+ + V +  V ++  +   
Sbjct: 2   FENLSNRLQQVVKTLRGHARLTEENITDAMREVRMALLEADVALPVVKDFVSQVKERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V E + +++   +   N   ++ P ++L+ G+ G GKTT   KL
Sbjct: 62  REVLQSLSPGQAVIQVVHEELTRLMGEQNVGLNL-ATNPPAIVLMAGLQGSGKTTTSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +     KV+LA+ D +R AAI+QLK  A     D   S      A +A +A   A+ 
Sbjct: 121 ARLLKADKKKVLLASADVYRPAAIEQLKTLAKSLEVDCFDSNATQKPADIAAQALDFAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLI DTAGRL  +  +MA I ++  +L       P   L V+DA  GQ+A+     
Sbjct: 181 HFYDVLIFDTAGRLGIDEAMMAEIKQLHEILS------PIETLFVVDAMQGQDAVNTARA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG ARGG  + +      P+ ++GV E ++ +E F  +  ++ + 
Sbjct: 235 FGETLPLTGVVLTKLDGDARGGAALSVRHVTGKPIKYIGVSEKVDGIELFHPERMASRVL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|324999618|ref|ZP_08120730.1| signal recognition particle protein [Pseudonocardia sp. P1]
          Length = 522

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 143/316 (45%), Gaps = 27/316 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDSLSERLGSTLRDLRGKGRLSDADIDATAREIRIALLEADVALPVVRGFIARIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++  N      P VI++ G+ G GKTT+ GKL
Sbjct: 62  SEVSQALNPAQQVVKIVNEELVTILGGETRRLNL-AKEPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-----------GSDAAA 180
           ++ +   G   +L A D  R  A++QL+I  +R                       D   
Sbjct: 121 ARWLKGQGHTPLLVACDLQRPNAVNQLQIVGERAGVQTFAPHPGATGSGELPEGPGDPVG 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A      A+ K+ DV+++DTAGRL  +  LM     +   +       P  VL V+DA 
Sbjct: 181 VARGGIAHAREKQYDVVVVDTAGRLGVDEELMRQASDIRTAVD------PDEVLFVVDAM 234

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ+A+   E F    G TG+++TK+DG ARGG  + +      P+ F   GE + D + 
Sbjct: 235 IGQDAVATAEAFRDGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFASNGEKLEDFDV 294

Query: 301 FVAKDFSAVITGCLDY 316
           F     S+ I G  D 
Sbjct: 295 FHPDRMSSRILGMGDL 310


>gi|225025490|ref|ZP_03714682.1| hypothetical protein EIKCOROL_02390 [Eikenella corrodens ATCC
           23834]
 gi|224941774|gb|EEG22983.1| hypothetical protein EIKCOROL_02390 [Eikenella corrodens ATCC
           23834]
          Length = 453

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + S +L +    +    RL +D ++E L +    L+ +D+ + V +  +  +  +   
Sbjct: 2   LDNLSGRLSQWAKKMRGQARLSEDNIKEALREVRMALLEADVALPVVKDFMASVKERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q  +  V++ + +++   +   N      P V+L+ G+ G GKTT  GKL
Sbjct: 62  HEVIGSLTPGQAFIGVVNQALTELMGTQNSSLNLAAV-PPAVVLMTGLQGAGKTTTAGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV+L + D +R AAI+QL++ A++  ADF  S++     A+A  A   A+
Sbjct: 121 ARLLKEEQRKKVLLVSADVYRPAAIEQLRLLAEQVGADFFPSDVSQQPVAIAQAALDYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  + ++MA I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 KHFYDVLMVDTAGRLAVDEVMMAEIKALHEAVN------PVETLFVVDAMLGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TKMDG ARGG  + +      P+ F+G GE I  LEPF     +  I
Sbjct: 235 AFNEALPLTGVILTKMDGDARGGAALSVRHVTGKPIKFIGTGEKIGGLEPFHPDRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|116495084|ref|YP_806818.1| Signal recognition particle GTPase [Lactobacillus casei ATCC 334]
 gi|116105234|gb|ABJ70376.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Lactobacillus casei ATCC 334]
          Length = 478

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L++  + +    ++ +        E+   L+ +D+   V +  ++ + TK  
Sbjct: 2   AFEGLSERLQKAFSGLRRKGKVSESDIRDAMREIRLALLEADVNFDVVKTFIKNVRTKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + K +   + P N    H P VI++ G+ G GKTT +GK
Sbjct: 62  GAEVLESLTPSQQIIKIVNDELVKTMGEAAVPLN-KAPHIPTVIMMAGLQGAGKTTTVGK 120

Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           LSK + D    + +L A D +R AAIDQL+    + +          D   +  +    A
Sbjct: 121 LSKYLMDNDSARPLLIAADVYRPAAIDQLQTIGKQLNVPVFEMGTDVDPVEIVRQGLATA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  K D ++IDTAGRL  +  LM  +  +  +        P+ +L V DA TGQ A+   
Sbjct: 181 KENKNDYVLIDTAGRLQIDEKLMNELKNIKEL------AHPNDILLVDDAMTGQAAVDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F     +  
Sbjct: 235 KGFNEQLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMDALDVFYPDRMANR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|255318633|ref|ZP_05359864.1| signal recognition particle protein [Acinetobacter radioresistens
           SK82]
 gi|262379142|ref|ZP_06072298.1| signal recognition particle protein [Acinetobacter radioresistens
           SH164]
 gi|255304315|gb|EET83501.1| signal recognition particle protein [Acinetobacter radioresistens
           SK82]
 gi|262298599|gb|EEY86512.1| signal recognition particle protein [Acinetobacter radioresistens
           SH164]
          Length = 471

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + + KM+   ++  +   +  P ++L+ G+ G GKTT   KL
Sbjct: 62  QEVMSQLSPGQAFVKIVYDELTKMMGEANESLDL-AAKPPVIVLLAGLQGAGKTTTAAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KV + + D +R AAI QL+  A+   A+F+ S    D   +A  A +QA+
Sbjct: 121 ARFLKERQKKKVAMVSADIYRPAAIKQLQTVANEVGAEFIESSADEDPIVIANRAIEQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I  +   ++      P   L V+DA TGQ+A    +
Sbjct: 181 IKFADVLIVDTAGRLHIDDDMMGEIKALHAAIQ------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF  +  +  I
Sbjct: 235 AFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPERVAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|228928893|ref|ZP_04091925.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228830700|gb|EEM76305.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 449

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTELMGGEQSKIAI-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ LE F  +  ++ 
Sbjct: 235 QSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDALEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|254519213|ref|ZP_05131269.1| signal recognition particle protein [Clostridium sp. 7_2_43FAA]
 gi|226912962|gb|EEH98163.1| signal recognition particle protein [Clostridium sp. 7_2_43FAA]
          Length = 450

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 151/306 (49%), Gaps = 18/306 (5%)

Query: 20  GFASTSLKLKEGITDII-----SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            F   S KL+E    +      + + + + +RE ++  L+ +D+   V +K +  +  K 
Sbjct: 2   AFEGLSDKLQEAFKKLKGKGKLTEKDIKEAMRE-VKLALLEADVNFKVVKKFISSVSEKC 60

Query: 75  YAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              +V       Q+V+  V+E +  ++       N++ S  P VI++VG+ G GKTT+ G
Sbjct: 61  VGNEVLESLTPAQQVIKIVNEELTNLMGGSESKLNFN-SVGPTVIMMVGLQGAGKTTMSG 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ ++     K +L A D +R AAI QL++   +            +   +A      A
Sbjct: 120 KLALQLRKQNKKPLLVACDIYRPAAIKQLEVVGKQIDIPVFQMGDKVNPVDIAKAGIAHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    +V+IIDTAGRLH +  LM  +  +   +       P  +L V+D+ TGQ+A+   
Sbjct: 180 RENGNNVIIIDTAGRLHIDENLMEELKSIKEEVN------PQEILLVVDSMTGQDAVNVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     +G+I+TK+DG  RGG  + I    + P+ F+GVGE ++D E F     S+ 
Sbjct: 234 ESFNNSLDVSGVILTKLDGDTRGGAALSIRSVTEKPIKFIGVGEKMSDFEVFYPDRMSSR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|86142309|ref|ZP_01060819.1| signal recognition particle-docking protein FtsY [Leeuwenhoekiella
           blandensis MED217]
 gi|85831061|gb|EAQ49518.1| signal recognition particle-docking protein FtsY [Leeuwenhoekiella
           blandensis MED217]
          Length = 317

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 187/312 (59%), Gaps = 14/312 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S+ +K         L KG   ++      +   +    ++DD V ++LE++L+ SD+GV
Sbjct: 1   MSFFKKIFSKEKKETLDKGLEKSNTNFLNKLGKAVAGKSKVDDEVLDDLEEVLVSSDVGV 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILV 116
           A   KI+E +  +    K +    +   + + I  ++   +     DFS    +P+VI+V
Sbjct: 61  ATTIKIIERIEARVARDKYLGTDELNAILRDEIAGLMSETNSGEATDFSIPSKKPYVIMV 120

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ +    GLKV+L A DTFR+AAIDQL+IWADR     +  ++GS
Sbjct: 121 VGVNGVGKTTTIGKLAHQFKSKGLKVVLGAADTFRAAAIDQLQIWADRVDVPIIKQQMGS 180

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A++  + A     DV+IIDTAGRLHN   LM  + K+ RV++++ P AP  VL V
Sbjct: 181 DPASVAFDTVQSAVKLDADVVIIDTAGRLHNKVNLMKELTKVKRVMQKVVPDAPDEVLLV 240

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LD +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGI+
Sbjct: 241 LDGSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGID 300

Query: 297 DLEPFVAKDFSA 308
           DL+ F   +F  
Sbjct: 301 DLQVFNKIEFVD 312


>gi|75906502|ref|YP_320798.1| signal recognition particle-docking protein FtsY [Anabaena
           variabilis ATCC 29413]
 gi|75700227|gb|ABA19903.1| signal recognition particle-docking protein FtsY [Anabaena
           variabilis ATCC 29413]
          Length = 546

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 105/314 (33%), Positives = 178/314 (56%), Gaps = 5/314 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            + ++ E ++W++KL +G   T   +   +  I+    L+     E+E LL+++D+GV  
Sbjct: 231 PEDISIEEITWLKKLRQGLDKTRRSILNQLKAIVGQGPLNQAAVGEIEALLLQADVGVEA 290

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFS---HRPHVILVVG 118
              I+  L  K   +    +  +  + +++  ML  PL       F+      ++ L+ G
Sbjct: 291 TDYIISSLQKKLREEVTPPEEAIAYLKQILRDMLDAPLKTSHKASFAPDKDSLNIWLITG 350

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNG GKTT IGK+S     +G + ++ A DTFR+AA++Q+K+W  R+  + + +    +D
Sbjct: 351 VNGAGKTTTIGKISHLAKQSGYRCLIGAADTFRAAAVEQVKVWGKRSGVEVISNPGKNTD 410

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A   AQA+  ++L++DTAGRL N   LM  + K+ R++ +  P A    L VL
Sbjct: 411 PAAVVFDAIAAAQARNTELLLVDTAGRLQNKKNLMDELSKIRRIIDKKAPDAKIESLLVL 470

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+T GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G GEGI D
Sbjct: 471 DSTLGQNGLRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIED 530

Query: 298 LEPFVAKDFSAVIT 311
           L PF + +F   + 
Sbjct: 531 LRPFSSYEFVEALL 544


>gi|326333682|ref|ZP_08199919.1| signal recognition particle protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325948588|gb|EGD40691.1| signal recognition particle protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 520

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L     +I    RL D   +    E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FATLSDRLATTFKNIRGKGRLTDADIDATAREIRIALLEADVALPVVREFVARVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+++  V++ +  +L   ++   +     P VI++ G+ G GKTT+  KL
Sbjct: 62  EEVSQALNPAQQIVKIVNDELVTILGGETRRLRY-AKTGPTVIMLAGLQGAGKTTLAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +  + + G   +L A D  R  A++QL++  +R        + G+   +   +A +A ++
Sbjct: 121 ALWLKEQGKAPLLVAADLQRPNAVNQLQVNGERVGVPVYAPQPGNGVGNPVDVARDAVEE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+I+DTAGRL  +  LM     +   +       P  VL V+DA  GQ+A+  
Sbjct: 181 AKRKLHDVVIVDTAGRLGIDEELMKQAADIKAAVN------PDEVLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G  G+++TK+DG ARGG  + IV     PV F   GE + D + F     + 
Sbjct: 235 AQAFLDGVGYDGVVLTKLDGDARGGAALSIVQITGKPVMFASNGEKMTDFDLFHPDRMAG 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|228966791|ref|ZP_04127835.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228792890|gb|EEM40448.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 360

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTELMGGEQSKIAV-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ +E F  +  ++ 
Sbjct: 235 QSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|225868530|ref|YP_002744478.1| signal recognition particle protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701806|emb|CAW99232.1| signal recognition particle protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 523

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++    I   + L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTQRLQDVFKHIRGKKTLSEADVQEVTKEIRLALLEADVALPVVKTFIKRIRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q++L  V+E +  +L   +   +      P VI++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQILKIVNEELTGILGSETAELDKS-PKIPTVIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +      QA
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTNHSAVDIVANGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM+ + ++  + K      P+ +L V+D+  GQ A    
Sbjct: 181 KENRHDYVLIDTAGRLQIDEKLMSELREVKALAK------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 YEFNNQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|47570278|ref|ZP_00240927.1| signal recognition particle protein [Bacillus cereus G9241]
 gi|47553042|gb|EAL11444.1| signal recognition particle protein [Bacillus cereus G9241]
          Length = 404

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTELMGGEQSKIAV-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ LE F  +  ++ 
Sbjct: 235 QSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDALEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|84394289|ref|ZP_00993014.1| signal recognition particle protein [Vibrio splendidus 12B01]
 gi|86146312|ref|ZP_01064636.1| signal recognition particle protein [Vibrio sp. MED222]
 gi|84375092|gb|EAP92014.1| signal recognition particle protein [Vibrio splendidus 12B01]
 gi|85835791|gb|EAQ53925.1| signal recognition particle protein [Vibrio sp. MED222]
          Length = 464

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V+ +      
Sbjct: 2   FDNLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFVKRVKEGAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  +   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQAELEAVMGESNEALDL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK +++    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLTERDKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSSADQKPLDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAIDEEMMGEIKELHTAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDTLPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|238921089|ref|YP_002934604.1| signal recognition particle protein [Edwardsiella ictaluri 93-146]
 gi|238870658|gb|ACR70369.1| signal recognition particle protein, putative [Edwardsiella
           ictaluri 93-146]
          Length = 453

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +        E+   L+ +D+ + V ++ +  +      
Sbjct: 2   FENLSDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFISRVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V + + + +   +   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  QEVNKSLTPGQEFVKIVQDELTRAMGEANTELNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A+    DF  S++      +   A   A+
Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVQERPLDIVQRALTHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A     
Sbjct: 181 QKFYDVLIVDTAGRLHVDEAMMDEIKQIHAAIS------PVETLFVVDAMTGQDAANTAS 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNQALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|188585992|ref|YP_001917537.1| signal recognition particle-docking protein FtsY [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350679|gb|ACB84949.1| signal recognition particle-docking protein FtsY [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 310

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 128/311 (41%), Positives = 182/311 (58%), Gaps = 3/311 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +    K+  G   T       I  +++ +++D+   EELED+LI +D+GV    KIVE L
Sbjct: 1   MGIFSKIKDGLTKTRRGFVSQIEKLLTGKKIDEEFFEELEDILISADVGVDTTLKIVENL 60

Query: 71  LTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   + +     +   + + +  MLM   K         P V LVVGVNGVGKTT IG
Sbjct: 61  RQRIKEEKIKDSETVNQVLKDEMKDMLMQKDKSLTPQ-EGTPKVSLVVGVNGVGKTTSIG 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K    G KV+LAAGDTFR+AAIDQL+IW DR   D +  + G+D AA+ Y+A +  
Sbjct: 120 KLAYKHKQEGKKVVLAAGDTFRAAAIDQLQIWGDRVGVDVIKHQEGADPAAVVYDAIQAG 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D LI DTAGRLHN   LM  + K+ R+++R     PH V  VLDATTGQNAL Q 
Sbjct: 180 RARNADHLICDTAGRLHNKKNLMEELKKVSRIIEREIGTPPHDVYMVLDATTGQNALSQA 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F  V   +G+I+TK+DGTA+GG ++ +    +IP+ ++GVGEG+ DL+ F    F   
Sbjct: 240 KLFSEVTPVSGIILTKLDGTAKGGIVLALANEMEIPIKYIGVGEGMEDLQDFDPDQFIDA 299

Query: 310 ITG-CLDYGEE 319
           +     +  EE
Sbjct: 300 LFANSGENNEE 310


>gi|111023492|ref|YP_706464.1| signal recognition particle protein [Rhodococcus jostii RHA1]
 gi|110823022|gb|ABG98306.1| signal recognition particle protein [Rhodococcus jostii RHA1]
          Length = 528

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/318 (28%), Positives = 150/318 (47%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL     D    E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FESLSDRLTGALKDLRGKGRLSGADIDATCREIRLALLEADVALPVVRSFIAKIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSAALNPAQQVVKIVNEELVEILGGETRRLAF-AKTPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177
           +K + D G   +L A D  R  A+ QL+I  +R  A       G+              D
Sbjct: 121 AKWLRDQGHTPLLVACDLQRPGAVTQLQIVGERAGATVFAPHPGTSIGGGDNELGVTAAD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A+ K+ DV+I+DTAGRL  ++ LMA    +       D   P   + VL
Sbjct: 181 PVEVARAGVEEARNKQFDVVIVDTAGRLGIDADLMAQAAGI------RDAVNPDETIFVL 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F    G TG+++TK+DG ARGG  + +      P+ F   GE + D
Sbjct: 235 DAMIGQDAVSTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     ++ I G  D
Sbjct: 295 FDVFHPDRMASRILGMGD 312


>gi|238790728|ref|ZP_04634489.1| Signal recognition particle protein [Yersinia frederiksenii ATCC
           33641]
 gi|238721169|gb|EEQ12848.1| Signal recognition particle protein [Yersinia frederiksenii ATCC
           33641]
          Length = 453

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELIAAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A     DF  S++      +   A +QA+
Sbjct: 121 GKFLKEKHKKKVLVVSADVYRPAAIKQLETLAQGVGIDFFPSDVQEKPIDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|327313610|ref|YP_004329047.1| signal recognition particle-docking protein FtsY [Prevotella
           denticola F0289]
 gi|326944322|gb|AEA20207.1| signal recognition particle-docking protein FtsY [Prevotella
           denticola F0289]
          Length = 316

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/301 (41%), Positives = 180/301 (59%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T   +   +T  ++ + ++DD V ++LE++L+ SD+GV    KI+  +  +  
Sbjct: 15  LDKGLEKTKQNVFSKLTRAVAGKSKVDDEVLDDLEEILVTSDVGVDTTIKIIRRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   +   I  +L   +      +      RP+VILVVGVNGVGKTT IGK
Sbjct: 75  KDKYVSTSELNGILKSEITALLTENNTGSNDEWTLPEDARPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV L A DTFR+AA++Q++IW DR     V  ++G+D A++A++  + A+
Sbjct: 135 LAYQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVVKQQMGADPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +TGQNA  Q  
Sbjct: 195 ANGADVVIIDTAGRLHNKVGLMNELKKIKDVMKKVVPDAPHEVLLVLDGSTGQNAFEQAR 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F    F   +
Sbjct: 255 QFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFDKVQFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|293609099|ref|ZP_06691402.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829672|gb|EFF88034.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325121126|gb|ADY80649.1| 4.5S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 470

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ-----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V  Q       +  V + + KM+   ++  +   +  P V+L+ G+ G GKTT   KL
Sbjct: 62  QEVMTQLSPGQAFVKIVYDELTKMMGEANETLDLS-AKPPVVVLLAGLQGAGKTTTAAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM  + D +R AAI QL+  ++   A F+ S+       +   A +QA+
Sbjct: 121 ARFLKERQKKKVMTVSADVYRPAAIKQLETVSNEVGAGFIPSDPSEKPIDIVNRAIEQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH ++ +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 IQFADVLIVDTAGRLHVDADMMDEIKELHAAVK------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF     +  I
Sbjct: 235 AFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPDRVAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|160892009|ref|ZP_02073012.1| hypothetical protein BACUNI_04468 [Bacteroides uniformis ATCC 8492]
 gi|270296343|ref|ZP_06202543.1| signal recognition particle protein [Bacteroides sp. D20]
 gi|317480461|ref|ZP_07939556.1| signal recognition particle protein [Bacteroides sp. 4_1_36]
 gi|156858487|gb|EDO51918.1| hypothetical protein BACUNI_04468 [Bacteroides uniformis ATCC 8492]
 gi|270273747|gb|EFA19609.1| signal recognition particle protein [Bacteroides sp. D20]
 gi|316903376|gb|EFV25235.1| signal recognition particle protein [Bacteroides sp. 4_1_36]
          Length = 440

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 151/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +   N D   +P +IL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGETSEINLD--SKPAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++ A++            +  A+A  A ++A+
Sbjct: 120 ARMLKSKKNKKPLLVACDVYRPAAIEQLRVLAEQIDVPMYSEPDSKNPVAIAQNAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  + + +       P  +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDLVIVDTAGRLAVDEEMMNEIAAIKKAIN------PDEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|88811739|ref|ZP_01126993.1| 45S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Nitrococcus mobilis
           Nb-231]
 gi|88791130|gb|EAR22243.1| 45S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Nitrococcus mobilis
           Nb-231]
          Length = 458

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 142/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +        E+   L+ +D+ + V +  ++E+  +   
Sbjct: 2   FNNLSDRLDGIARRLRGQGRLTEGNIKETLREVRMALLEADVALPVVKAFIDEVKQRALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + + +M+   +     +    P V++V G+ G GKTT + KL
Sbjct: 62  EEVMKSLTPGQAFVKIVRDELVRMMGESNDALELNV-RPPAVVMVAGLQGSGKTTSLAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            + +      KV+  + D +R AAI+QL+  A      F  ++   D    A  A + A+
Sbjct: 121 GRWLLQHQKKKVLTVSLDVYRPAAIEQLQRLARDVEIGFFPTQASDDPVRAASAALEYAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRLH +  +M  + ++           P   L V+D+ TGQ+A    +
Sbjct: 181 NHYYDVLLLDTAGRLHVDQAMMDEVRRIHAA------AQPVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG ARGG  + I      P+ F+GVGE  + LEPF     ++ I
Sbjct: 235 AFDEALPLTGIILTKTDGDARGGAALSIRYVTGKPIKFIGVGEKTDALEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|326692469|ref|ZP_08229474.1| signal recognition particle protein [Leuconostoc argentinum KCTC
           3773]
          Length = 491

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 137/306 (44%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L + + ++    R+ +        E+   L+ +D+     +K V  +  K  
Sbjct: 2   AFENLTERLSKAMKNLTGRGRVSEEDLRATMREIRLALLEADVNYDTVKKFVANVREKAS 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             D+       Q+V+  V++ +   +   + P N      P +I++ G+ G GKTT + K
Sbjct: 62  GADILEGLNPAQQVVKIVNDELTATMGEEAVPLNKS-QKIPTIIMMAGLQGAGKTTTVAK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + +L A D +R AAIDQL+I                D   +  +   +A
Sbjct: 121 LAYKLKTEEKARPLLIAADVYRPAAIDQLEILGRDLDIPVFQLGTDVDPREIVRQGLAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D + IDTAGRL  + +LM  +  +  +        P  +L  +DA TGQNA    
Sbjct: 181 AENKNDYVFIDTAGRLQIDEVLMQELKDVAEI------AQPDEILLTVDAMTGQNAAETA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG  RGG  + I      P+ F+G GE   DL+ F     ++ 
Sbjct: 235 KGFAEALDLTGVVLTKLDGDTRGGAALSIRDVTGKPIKFVGQGEKPTDLDVFYPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|78485342|ref|YP_391267.1| signal recognition particle protein [Thiomicrospira crunogena
           XCL-2]
 gi|78363628|gb|ABB41593.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thiomicrospira crunogena XCL-2]
          Length = 459

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +    I    RL +        ++   L+ +D+ + V +  ++++  +   
Sbjct: 2   FDNLSDRLAKSFKTITGQGRLTESNIKDALRDVRRALLEADVALPVVKSFIDKVQERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V E + +++   ++P N++    P +I+V G+ G GKTT +GKL
Sbjct: 62  QEVSTSLNPGQAFIKIVREQLTEIMGQEAEPLNFNVE-PPAIIMVAGLQGAGKTTSVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM+ + D +R AAI QL+  A++    F  S    D   +A +A  +A+
Sbjct: 121 ARWLKEREKKKVMVVSADVYRPAAIKQLETLAEQVDVSFYPSTADEDPVDIAKKAHAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VDVLI+DTAGRLH +  +M  + ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 KQFVDVLILDTAGRLHVDEDMMQEVQRLHTAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ F+G GE    LE F     +  I
Sbjct: 235 AFNDALPLTGVILTKTDGDARGGAALSIREITGKPIKFIGAGEKTEALESFHPDRMAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|120436587|ref|YP_862273.1| cell division protein FtsY [Gramella forsetii KT0803]
 gi|117578737|emb|CAL67206.1| cell division protein FtsY [Gramella forsetii KT0803]
          Length = 317

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 121/300 (40%), Positives = 178/300 (59%), Gaps = 6/300 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             L KG   +     + ++  ++ + ++D+ V ++LE++L+ SD+GV    KI+  +  +
Sbjct: 14  ENLDKGLEKSKTSFFDKMSKAVAGKDKVDEEVLDDLENVLVSSDVGVTTTIKIINRIEER 73

Query: 74  -RYAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVI 128
               K +    +   + E I  +L   +             +P+VI+VVGVNGVGKTT I
Sbjct: 74  VARDKYLGTDELNKILREEIAALLSETNTGEGSEIQIPSDKKPYVIMVVGVNGVGKTTTI 133

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +    G KV+L A DTFR+AAIDQL+IWADRT    +  ++GSD A++A++  + 
Sbjct: 134 GKLAHQFKSNGQKVVLGAADTFRAAAIDQLQIWADRTGVPIIKQKMGSDPASVAFDTVQS 193

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A     DV++IDTAGRLHN   LM  + K+ RV+++    APH VL VLD +TGQNA  Q
Sbjct: 194 AVKMNADVVLIDTAGRLHNKVNLMNELTKVKRVMQKTIADAPHEVLLVLDGSTGQNAFEQ 253

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F A    T L +TK+DGTA+GG +I I    KIPV ++GVGEGI DL+ F   +F  
Sbjct: 254 AKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFKIPVKYIGVGEGIEDLQVFNKYEFVD 313


>gi|227892628|ref|ZP_04010433.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus ultunensis
           DSM 16047]
 gi|227865560|gb|EEJ72981.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus ultunensis
           DSM 16047]
          Length = 476

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S ++++ + ++    ++ +        E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFENLSERIQKALKNLTGKGKVSEEDINKASREIRLALLEADVNFKVVKDFIKTIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+V+  V+E + KM+   + P N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQVIKIVNEQLTKMMGEEAVPLNKS-KHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      + +L AGD +R AA+DQLK   ++        +   D A +  +   +A
Sbjct: 121 LAYHLQKTEKARPLLIAGDIYRPAAVDQLKQIGEQLKVPVFSEDGEKDVAKIVKDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM  + ++ +V        P ++L V+DA TGQ A    
Sbjct: 181 DKNKNDYVLIDTAGRLEIDEPLMEELERVKKV------AQPDNILLVVDAMTGQAATDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F G GE + DL+ F     ++ 
Sbjct: 235 KGFDERLDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLTDLDVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|148241110|ref|YP_001226267.1| Signal recognition particle GTPase, FtsY [Synechococcus sp. RCC307]
 gi|147849420|emb|CAK26914.1| Signal recognition particle GTPase, FtsY [Synechococcus sp. RCC307]
          Length = 490

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/313 (33%), Positives = 177/313 (56%), Gaps = 6/313 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ E + W+ +L +G   T       + + +    L +   +++E LL+++D+GV    
Sbjct: 175 QISLEEIDWLGRLRRGMEKTRQNFVTTLLENLGDDPLSEASLDDIETLLLQADVGVEATD 234

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSHRPHVILVVGV 119
           ++++ L  +     V     +  + + +  +L        + P       R ++ L+VGV
Sbjct: 235 QVLDLLRRRMNEAVVDGSEAINLLKDQLRNLLDAPIKSMGANPLLAPQKGRLNIWLMVGV 294

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NGVGKTT +GKL+     +G   ++AAGDTFR+AA+ QL++WADR+    V +    +D 
Sbjct: 295 NGVGKTTTLGKLANLAVRSGYSCLVAAGDTFRAAAVQQLQVWADRSGVPLVANPSANADP 354

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQ+K +++L++DTAGRL   + LM  + K+ R++ RL P A    L VLD
Sbjct: 355 AAVVFDAIGAAQSKDIELLLVDTAGRLQTKNNLMEELAKVRRIVDRLAPDAAVESLLVLD 414

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A+ GQN LRQ   F   AG TG+++TK+DGTARGG    +     +P+ F+G GEG+ DL
Sbjct: 415 ASQGQNGLRQAMAFAKAAGLTGVVLTKLDGTARGGVAFAVASESNLPIRFIGAGEGLRDL 474

Query: 299 EPFVAKDFSAVIT 311
            PF + +F   + 
Sbjct: 475 RPFNSFEFVEALL 487


>gi|227499935|ref|ZP_03930028.1| signal recognition particle protein Ffh [Anaerococcus tetradius
           ATCC 35098]
 gi|227218044|gb|EEI83317.1| signal recognition particle protein Ffh [Anaerococcus tetradius
           ATCC 35098]
          Length = 445

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 149/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E +  +    +L     D    E+   L+ +D+   V +  V+ +  +   
Sbjct: 3   FEGLSERLQETLGKLTGKGKLSEKDIDAAMREIRLSLLEADVNYKVVKDFVKTIKERSLG 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E +  ++   +   +   S  PH++++VG+ G GKTT  GKL
Sbjct: 63  QDVMTSLSPGQMVVKIVNEELTCLMGKENSKLDLKGS-TPHMVMMVGLQGSGKTTHSGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+       ML A D +R AAI+QLK+       +    +   D    A EA   A+A
Sbjct: 122 ALKLKKENRNPMLTALDIYRPAAIEQLKVVGKNAGVEVF-EKDKQDPVKTAKEAKDYARA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            + DV+I+DTAGRL  ++ LM  +  +   +       P  +L V+DA TGQ A+   + 
Sbjct: 181 NRHDVVILDTAGRLQIDTDLMDELKNIKEAVN------PDEILLVVDAMTGQEAVNVAKT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG ARGG  + I      P+ F+GVGE + DLEPF     +  I 
Sbjct: 235 FDDYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGVGEKLEDLEPFHPDRMANRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|299821775|ref|ZP_07053663.1| cell division protein FtsY [Listeria grayi DSM 20601]
 gi|299817440|gb|EFI84676.1| cell division protein FtsY [Listeria grayi DSM 20601]
          Length = 327

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 129/325 (39%), Positives = 197/325 (60%), Gaps = 12/325 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+  ++ S   K   G + T       +  +++  R++D+   EELE++LI +D+G  
Sbjct: 8   KEKITGQTDSVTGKFKDGLSKTRQNFSGKLNQMMARYRKVDEEFFEELEEVLIGADVGFD 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML------MPLSKPFNWDFSHRPHVIL 115
              ++V++L  +   +++S      +V E+I + L         +KP       R ++IL
Sbjct: 68  TVMELVDQLREEVKLRNISDP---KEVQEVIVEKLVAIYEGEEEAKPALDIKDGRLNIIL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++  +   G KVMLAAGDTFR+ AI+QL++W +R + + +    G
Sbjct: 125 FVGVNGVGKTTTIGKMAHMLQSQGKKVMLAAGDTFRAGAIEQLEVWGERANVEVIKQTAG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV+ R  P APH VL 
Sbjct: 185 SDPAAVMYDALQAAKARGVDVLLCDTAGRLQNKVNLMNELEKVKRVIGREVPDAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNA  Q + F      +G+++TK+DGTA+GG +I I    +IPV ++G+GE I
Sbjct: 245 VLDATTGQNAFVQAKQFKEATDVSGIVLTKLDGTAKGGIVIAIRNGLQIPVKYIGLGEKI 304

Query: 296 NDLEPFVAKDFSAVITGCLDYGEEK 320
           +DL+PF A+D+   +    D  +EK
Sbjct: 305 DDLQPFDAEDYVYGLFA--DLIDEK 327


>gi|317052717|ref|YP_004113833.1| signal recognition particle protein [Desulfurispirillum indicum S5]
 gi|316947801|gb|ADU67277.1| signal recognition particle protein [Desulfurispirillum indicum S5]
          Length = 462

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+      ++   D+    ++ +        E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   FSQLQNSFQKVFKDLRGQGKISEANIQEALREVRVALLDADVNIKVVRQFIAQVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V   + +++       +   S  P V+++ G+ G GKTT  GKL
Sbjct: 62  QEVLQSLTPGQQFIKIVDAELTELMGQTHTKLHLS-STPPTVVMMCGLQGSGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G KVMLA  D +R AA++Q++  A++   D            +  +A K A  
Sbjct: 121 AASFKKQGRKVMLAGADIYRPAAVEQIRALAEQVGVDVYAPGTDISPVEICAQARKLAMG 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K++D+LI+DTAGRLH +  LM  + ++           P  +L V DA TGQ A+   + 
Sbjct: 181 KQIDLLILDTAGRLHIDDALMEELVQIKA------SARPDEILFVADAMTGQEAVNVAQS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      +G+I+TKMD  ARGG  + I      P+ ++G GE ++ LEPF     ++ I 
Sbjct: 235 FDERLDLSGVILTKMDSDARGGAALSIRALLGKPIKYIGGGEKMDALEPFHPDRVASRIL 294

Query: 312 GCLDY 316
           G  D 
Sbjct: 295 GMGDM 299


>gi|161830238|ref|YP_001596381.1| signal recognition particle protein [Coxiella burnetii RSA 331]
 gi|161762105|gb|ABX77747.1| signal recognition particle protein [Coxiella burnetii RSA 331]
          Length = 461

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   I  +    RL +        ++   LI +D+ + V +  +E +  K   
Sbjct: 2   LNNLTNRLTTSINKLRGLGRLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       + ++  V + +  +L       N + +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVIGNVRPGEALVKVVQDELTHLLGDELVEINLN-AQPPIVIVMAGLQGSGKTTTVAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +       VM+A+ D +R AAI QL+  A + +A F  ++       +A  A KQA+
Sbjct: 121 ARWLLEIQKKSVMVASADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAE 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVLI+DTAGRLH +++LM  +  +       D   P  +L V+D+  GQ+A    +
Sbjct: 181 KQFMDVLILDTAGRLHIDNVLMEEMKAI------SDAVTPTEILLVVDSMMGQDAANVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + + +  + P+ F+GVGE I+ LEPF     ++ I
Sbjct: 235 SFNDTLPLTGVILTKLDGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|319951000|ref|ZP_08024870.1| signal recognition particle protein [Dietzia cinnamea P4]
 gi|319435343|gb|EFV90593.1| signal recognition particle protein [Dietzia cinnamea P4]
          Length = 529

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/316 (28%), Positives = 142/316 (44%), Gaps = 28/316 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTGALKDLRGKGRLSDADIDATAREIRLALLEADVALPVVRAFISRVKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V   +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPAQQVVKIVDAELTAILGGEARRIEF-AKQPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI------------GSDAA 179
           +  +   G   +L A D  R  A+DQL+I  +R                        +  
Sbjct: 121 AYWLKGQGHTPLLVACDLQRPGAVDQLRIVGERAGVQTFAPHPGTSVGGDGAEIGVQEPV 180

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A      A+AK  DV+I+DTAGRL  +  +MA    +       D   PH    VLDA
Sbjct: 181 SVAQRGLAHARAKMHDVVIVDTAGRLGIDEEMMAQARGI------RDAVQPHETFFVLDA 234

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             GQ+A+   E F    G TG+++TK+DG ARGG  + +      P+ F   GE + D +
Sbjct: 235 MIGQDAVVTAEAFREGVGFTGVVLTKLDGDARGGAALSVRELTGTPIMFASDGEKLEDFD 294

Query: 300 PFVAKDFSAVITGCLD 315
            F  +  S+ I G  D
Sbjct: 295 VFHPERMSSRILGMGD 310


>gi|312865260|ref|ZP_07725488.1| signal recognition particle protein [Streptococcus downei F0415]
 gi|311099371|gb|EFQ57587.1| signal recognition particle protein [Streptococcus downei F0415]
          Length = 524

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKDFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q+++  V+E +  +L   +          P +I+++G+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQIIKIVNEELTAVLGSETAEIEKS-PKIPTIIMMIGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + S           A  +      QA
Sbjct: 121 LANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQISVPVFDMGTDVPATEIVKNGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENRNDYVLIDTAGRLQIDETLMQELRDVKEL------AQPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNQQLDITGVVLTKIDGDTRGGAALSVRQITGRPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|269127630|ref|YP_003301000.1| signal recognition particle protein [Thermomonospora curvata DSM
           43183]
 gi|268312588|gb|ACY98962.1| signal recognition particle protein [Thermomonospora curvata DSM
           43183]
          Length = 524

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 145/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L    + + S  RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FETLSDRLTSVFSSLRSKGRLSEADINATAREIRIALLEADVALPVVKDFIAHVKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVVKIVNEELIEILGGETRRLRF-AKTPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +  +   G   +L A D  R  A+ QL++  +R        E G+   D   +A  + ++
Sbjct: 121 AYWLKGQGHTPLLVAADLQRPNAVQQLQVMGERAGVPVFAPEPGNGVGDPVQVARRSVEE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+  + DV+IIDTAGRL  ++ +M         +   D  +P  +L V+DA  GQ+A+  
Sbjct: 181 ARRAQHDVVIIDTAGRLGVDAEMMQQ------AIDIRDAVSPDEILFVVDAMVGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G  G+++TK+DG ARGG  + +      P+ F   GE + D + F     + 
Sbjct: 235 AQAFMDGVGFDGVVLTKLDGDARGGAALSVRHITGRPIMFASTGEKLEDFDLFHPDRMAG 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|296876507|ref|ZP_06900558.1| signal recognition particle protein [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432500|gb|EFH18296.1| signal recognition particle protein [Streptococcus parasanguinis
           ATCC 15912]
          Length = 523

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISEADVQEATKEIRLALLEADVALPVVKDFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIETLNPAQQIVKIVDEELTAILGSETAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLVKEEKARPLMIAADIYRPAAIDQLKTLGQQINVPVFSLGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +++      P+ +L V+DA  GQ A    
Sbjct: 181 RANHNDYVLIDTAGRLQIDEKLMGELRDVKALVE------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S  
Sbjct: 235 REFNEQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSGR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|326802525|ref|YP_004320344.1| signal recognition particle-docking protein FtsY [Sphingobacterium
           sp. 21]
 gi|326553289|gb|ADZ81674.1| signal recognition particle-docking protein FtsY [Sphingobacterium
           sp. 21]
          Length = 320

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 128/300 (42%), Positives = 186/300 (62%), Gaps = 5/300 (1%)

Query: 17  LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T       IT  ++    +D+ V ++LE++L+ SD+GV    KI+E +  +  
Sbjct: 20  LDKGLEKTKEGFFTKITKAVVGKSTVDEEVLDDLEEVLVTSDVGVTTTLKIIERIEDRVA 79

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKL 131
             K ++   +   + E I ++L   +     +F   +H+P+VI+VVGVNGVGKTT IGKL
Sbjct: 80  RDKYINTSELNGILREEIQELLAENNSNDFENFEYGNHKPYVIMVVGVNGVGKTTTIGKL 139

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+  AG KV+L A DTFR+AA+DQ+K+W +R     V   +GSD A++A++  + A A
Sbjct: 140 AHKLKQAGNKVVLGAADTFRAAAVDQIKLWGERVGVRVVAQAMGSDPASVAFDTIQSAVA 199

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            + DV IIDTAGRLHN   LM  + K+  V+K++ P APH +L VLDA+TGQNA+ Q + 
Sbjct: 200 NQEDVAIIDTAGRLHNKLALMNELTKIKNVMKKVVPGAPHEILLVLDASTGQNAIEQCKQ 259

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        L +TK+DGTA+GG +I I    KIPV ++GVGEGINDL+ F  K+F   + 
Sbjct: 260 FTQATDVNALALTKLDGTAKGGVVIGISDQFKIPVKYIGVGEGINDLQLFNKKEFVDSLF 319


>gi|284051088|ref|ZP_06381298.1| cell division protein [Arthrospira platensis str. Paraca]
          Length = 399

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 110/314 (35%), Positives = 183/314 (58%), Gaps = 5/314 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            ++VA E ++W++KL KG   T   L   +  I+    L+    EE+E LL+++D+GV  
Sbjct: 84  PEEVAVEEITWLQKLWKGLGRTRRNLLNQLKAIVGQGPLNQAAVEEIEALLLQADVGVEA 143

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVG 118
              I+E L  +     +  +  +  + +L+  +L         P       + ++ L+ G
Sbjct: 144 TDVIIEALQNRLREDALPPEDAIAYLKQLLRDLLEKPYQNGYSPTFAPEKEQLNIWLITG 203

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNG GKTT IGK++     +  + ++AAGDTFR+AA++Q+K+W +R+  + + +    +D
Sbjct: 204 VNGAGKTTTIGKIAHIAQKSDYRSLIAAGDTFRAAAVEQVKVWGERSGVEVIANPGKNTD 263

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A   A++++ ++LIIDTAGRL N   LM  + K+ RV+ +  P A    L VL
Sbjct: 264 PAAVVYDAIAAAKSRQTELLIIDTAGRLQNKKNLMEELNKIRRVIDKQAPDAKVESLLVL 323

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+T GQN LRQ ++F  VA  +G+++TK+DGTA+GG  + +V    +P+ F+GVGE I D
Sbjct: 324 DSTLGQNGLRQAQVFAEVAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGVGESIED 383

Query: 298 LEPFVAKDFSAVIT 311
           L PF + +F   + 
Sbjct: 384 LRPFSSYEFIEALL 397


>gi|218710520|ref|YP_002418141.1| Signal recognition particle protein [Vibrio splendidus LGP32]
 gi|218323539|emb|CAV19739.1| Signal recognition particle protein [Vibrio splendidus LGP32]
          Length = 470

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 149/308 (48%), Gaps = 17/308 (5%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTK 73
              F + + +L + + +I    RL +        E+   L+ +D+ + V +  V+ +   
Sbjct: 5   KTMFDNLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVRDFVKRVKEG 64

Query: 74  RYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
               +VS      Q  +  V   +  ++   ++  +   +  P VIL+ G+ G GKTT +
Sbjct: 65  AVGVEVSKSLTPGQEFIKIVQAELEAVMGESNEALDL-AAQPPAVILMAGLQGAGKTTSV 123

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKLSK +++    KV++ + D +R AAI QL+  A     DF  S        +A  A  
Sbjct: 124 GKLSKLLTERDKKKVLVVSADVYRPAAIKQLETLASDVGVDFFPSSADQKPLDIANAAID 183

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ K  DVLI+DTAGRL  +  +M  I ++   +K      P   L V+DA TGQ+A  
Sbjct: 184 HAKKKFYDVLIVDTAGRLAIDEEMMGEIKELHTAIK------PVETLFVVDAMTGQDAAN 237

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     +
Sbjct: 238 TAKAFGDTLPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVA 297

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 298 SRILGMGD 305


>gi|195978137|ref|YP_002123381.1| signal recognition particle protein Ffh [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225870534|ref|YP_002746481.1| signal recognition particle protein [Streptococcus equi subsp. equi
           4047]
 gi|195974842|gb|ACG62368.1| signal recognition particle protein Ffh [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225699938|emb|CAW93879.1| signal recognition particle protein [Streptococcus equi subsp. equi
           4047]
          Length = 523

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++    I   + L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTQRLQDVFKHIRGKKTLSEADVQEVTKEIRLALLEADVALPVVKTFIKRIRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q++L  V+E +  +L   +   +      P VI++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQILKIVNEELTGILGSETAELDKS-PKIPTVIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +      QA
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTNHSAVDIVANGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  + ++  + K      P+ +L V+D+  GQ A    
Sbjct: 181 KENRHDYVLIDTAGRLQIDEKLMGELREVKALAK------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + I      P+ F G GE I D+E F     S+ 
Sbjct: 235 YEFNNQLDITGVVLTKIDGDTRGGAALSIREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|42782937|ref|NP_980184.1| signal recognition particle protein [Bacillus cereus ATCC 10987]
 gi|49478411|ref|YP_037906.1| signal recognition particle protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141643|ref|YP_085186.1| signal recognition particle protein [Bacillus cereus E33L]
 gi|118479067|ref|YP_896218.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacillus
           thuringiensis str. Al Hakam]
 gi|217961265|ref|YP_002339833.1| signal recognition particle protein [Bacillus cereus AH187]
 gi|218904975|ref|YP_002452809.1| signal recognition particle protein [Bacillus cereus AH820]
 gi|225865826|ref|YP_002751204.1| signal recognition particle protein [Bacillus cereus 03BB102]
 gi|228916482|ref|ZP_04080048.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228935159|ref|ZP_04097986.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947564|ref|ZP_04109854.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228986988|ref|ZP_04147114.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229092887|ref|ZP_04224021.1| Signal recognition particle protein [Bacillus cereus Rock3-42]
 gi|229123359|ref|ZP_04252563.1| Signal recognition particle protein [Bacillus cereus 95/8201]
 gi|229157421|ref|ZP_04285499.1| Signal recognition particle protein [Bacillus cereus ATCC 4342]
 gi|229186085|ref|ZP_04313254.1| Signal recognition particle protein [Bacillus cereus BGSC 6E1]
 gi|229197955|ref|ZP_04324670.1| Signal recognition particle protein [Bacillus cereus m1293]
 gi|301055335|ref|YP_003793546.1| signal recognition particle protein [Bacillus anthracis CI]
 gi|42738864|gb|AAS42792.1| signal recognition particle protein [Bacillus cereus ATCC 10987]
 gi|49329967|gb|AAT60613.1| signal recognition particle protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975112|gb|AAU16662.1| signal recognition particle protein [Bacillus cereus E33L]
 gi|118418292|gb|ABK86711.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacillus
           thuringiensis str. Al Hakam]
 gi|217066657|gb|ACJ80907.1| signal recognition particle protein [Bacillus cereus AH187]
 gi|218538723|gb|ACK91121.1| signal recognition particle protein [Bacillus cereus AH820]
 gi|225787793|gb|ACO28010.1| signal recognition particle protein [Bacillus cereus 03BB102]
 gi|228585534|gb|EEK43637.1| Signal recognition particle protein [Bacillus cereus m1293]
 gi|228597261|gb|EEK54912.1| Signal recognition particle protein [Bacillus cereus BGSC 6E1]
 gi|228626148|gb|EEK82897.1| Signal recognition particle protein [Bacillus cereus ATCC 4342]
 gi|228660135|gb|EEL15771.1| Signal recognition particle protein [Bacillus cereus 95/8201]
 gi|228690509|gb|EEL44292.1| Signal recognition particle protein [Bacillus cereus Rock3-42]
 gi|228772766|gb|EEM21206.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812084|gb|EEM58415.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824524|gb|EEM70329.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228843061|gb|EEM88143.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300377504|gb|ADK06408.1| signal recognition particle protein [Bacillus cereus biovar
           anthracis str. CI]
 gi|324327742|gb|ADY23002.1| signal recognition particle protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 449

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTELMGGEQSKIAV-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ LE F  +  ++ 
Sbjct: 235 QSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDALEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|116495087|ref|YP_806821.1| Signal recognition particle GTPase [Lactobacillus casei ATCC 334]
 gi|227534898|ref|ZP_03964947.1| signal recognition particle docking protein FtsY [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|116105237|gb|ABJ70379.1| signal recognition particle-docking protein FtsY [Lactobacillus
           casei ATCC 334]
 gi|227187654|gb|EEI67721.1| signal recognition particle docking protein FtsY [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 331

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 170/302 (56%), Gaps = 5/302 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +G   +     E +  + ++ R +D+   + LE++LI SD+G   A K+ ++L  +
Sbjct: 22  NKYDEGLEKSRSSFGEKLNALFANFRSVDEDFFDNLEEMLIESDVGFETAVKLSDDLREE 81

Query: 74  RYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIG 129
              K+    + +   + E +  M     K  +         P V L VGVNG GKTT +G
Sbjct: 82  VKLKNAKDPKAVSRVIVEKLVDMYGDAGKDEDNALHFAESGPSVFLFVGVNGAGKTTTVG 141

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ ++ + G +V+L A DTFR+ AI QL+ W  R     V ++ G D AA+ ++  K+A
Sbjct: 142 KLAHQLKEEGKRVLLVAADTFRAGAIQQLQEWGRRVDVPVVATKEGGDPAAVVFDGVKRA 201

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + ++ DV+++DTAGRL N   LM  + K+ RV+ R  P AP  VL VLDATTGQNAL Q 
Sbjct: 202 KDEQFDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQNALNQA 261

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG+ +GG ++ I     +PV  +G+GE ++DL+ F    F A 
Sbjct: 262 KEFNQTTKITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDPTKFVAG 321

Query: 310 IT 311
           + 
Sbjct: 322 LF 323


>gi|325103016|ref|YP_004272670.1| signal recognition particle-docking protein FtsY [Pedobacter
           saltans DSM 12145]
 gi|324971864|gb|ADY50848.1| signal recognition particle-docking protein FtsY [Pedobacter
           saltans DSM 12145]
          Length = 321

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 122/301 (40%), Positives = 182/301 (60%), Gaps = 7/301 (2%)

Query: 17  LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T       I+  +I    +DD V ++LE++L+ SD+GV    KI+E +  +  
Sbjct: 20  LEKGLEKTKDSFFSKISKAVIGKSTVDDEVLDDLEEILVTSDVGVTTTLKIIERIENRVA 79

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K ++   +   + E I  +L   +    + FN+    +P+VI+VVGVNGVGKTT IGK
Sbjct: 80  KNKYLNTSELNQILREEIQALLEENNSADFEQFNYS-GKKPYVIMVVGVNGVGKTTTIGK 138

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++ +AG KV+L A DTFR+AA+DQ+K+W +R     V   + +D A++A++  + A 
Sbjct: 139 LAYQLREAGNKVVLGAADTFRAAAVDQIKLWGERVDVRVVSQGMNADPASVAFDTLQSAV 198

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   D+ IIDTAGRLHN   LM  + K+  V++++ P APH +L VLDA+TGQNA+ Q +
Sbjct: 199 ANDEDIAIIDTAGRLHNKVGLMNELTKIKNVMQKVVPGAPHEILLVLDASTGQNAIEQCK 258

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        L +TK+DGTA+GG +I I    KIPV ++GVGE + DL+ F  KDF   +
Sbjct: 259 QFTQATDVNALALTKLDGTAKGGVVIGISDQFKIPVKYIGVGEKMTDLQLFNKKDFVDSL 318

Query: 311 T 311
            
Sbjct: 319 F 319


>gi|148985187|ref|ZP_01818426.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922632|gb|EDK73750.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800200|emb|CBW32808.1| signal recognition particle protein [Streptococcus pneumoniae
           OXC141]
          Length = 523

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 141/307 (45%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +           P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVK------VLAQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|152999786|ref|YP_001365467.1| signal recognition particle protein [Shewanella baltica OS185]
 gi|151364404|gb|ABS07404.1| signal recognition particle protein [Shewanella baltica OS185]
          Length = 457

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + K +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A   + +F  S++      +A  A   A+
Sbjct: 121 GKFLRERHKKSVLVVSADVYRPAAIKQLETLAQEVAVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|116512427|ref|YP_809643.1| signal recognition particle protein [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116108081|gb|ABJ73221.1| signal recognition particle subunit FFH/SRP54 (srp54) [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 518

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L+    ++   +++ +     + +E+   L+ +D+ + V +K ++ +  +  
Sbjct: 2   AFENLTERLQNVFKNLRGKKKITETDVTEITKEIRVALLEADVALPVVKKFIKAIRERAV 61

Query: 76  AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +VS      Q+V+  V E +  +L              P +I++VG+ G GKTT  GK
Sbjct: 62  GVEVSEALNPAQQVIKIVDEELTAILGGGEAEL-LKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+KK+ +    + ++ A D +R AAIDQLK   ++                +      +A
Sbjct: 121 LAKKLKEEQNARPLMIAADVYRPAAIDQLKTLGEQLDIPVYDEGTSEKPVNIVRNGLLKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q ++ D ++IDTAGRL  +  LM  + ++  +        P  +L V+DA TGQ A +  
Sbjct: 181 QEERKDYVLIDTAGRLEIDDTLMNELQEIKAL------AQPTEILLVVDAMTGQVAAQVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F G GE + DLE F     S+ 
Sbjct: 235 KTFDEKLDITGVIITKLDGDTRGGAALSIREITGKPIKFTGTGEKLTDLEVFYPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|298209272|ref|YP_003717451.1| recognition particle-docking protein FtsY [Croceibacter atlanticus
           HTCC2559]
 gi|83849199|gb|EAP87068.1| recognition particle-docking protein FtsY [Croceibacter atlanticus
           HTCC2559]
          Length = 317

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 120/298 (40%), Positives = 179/298 (60%), Gaps = 6/298 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   +       ++  ++ + ++DD V +ELE++L+ SD+GV    KI++ +  +  
Sbjct: 16  LDKGLEKSKSSFFGKLSKAVAGKSKVDDDVLDELEEILVASDVGVTTTIKIIKRIEERVA 75

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTVIGK 130
             K +    +   + E I  +L          F      +P+VI+VVGVNGVGKTT IGK
Sbjct: 76  KDKYLGTDELNLILREEIAGLLSETETDSKLGFHIPEGKKPYVIMVVGVNGVGKTTTIGK 135

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    G  V+L A DTFR+AAIDQL++WADRT    V  ++GSD A++A+E  ++A 
Sbjct: 136 LAHQFKSQGKNVVLGAADTFRAAAIDQLQVWADRTGVPIVKQQMGSDPASVAFETVQEAV 195

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+++DTAGRLHN   LM  + K+ RV++++  + P  VL VLD +TGQNA  Q +
Sbjct: 196 KQNADVVLVDTAGRLHNKVNLMNELSKVKRVMQKVADNVPDEVLLVLDGSTGQNAFEQAK 255

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGI DL+ F   +F  
Sbjct: 256 QFTAATEVTSLAITKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQAFDKFEFVD 313


>gi|239501248|ref|ZP_04660558.1| signal recognition particle protein [Acinetobacter baumannii AB900]
          Length = 469

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ-----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V  Q       +  V + + KM+   ++  +   +  P V+L+ G+ G GKTT   KL
Sbjct: 62  QEVMTQLSPGQAFVKIVYDELTKMMGEANETLDLS-AKPPVVVLLAGLQGAGKTTTAAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM  + D +R AAI QL+  +    A F+ S+       +   A +QA+
Sbjct: 121 ARFLKERQKKKVMTVSADVYRPAAIKQLETVSAEVGAGFIPSDPSEKPIDIVNRAIEQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 IQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF     +  I
Sbjct: 235 AFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPDRVAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|169634139|ref|YP_001707875.1| GTP-binding signal recognition particle protein [Acinetobacter
           baumannii SDF]
 gi|169797016|ref|YP_001714809.1| GTP-binding signal recognition particle protein [Acinetobacter
           baumannii AYE]
 gi|184157071|ref|YP_001845410.1| Signal recognition particle GTPase [Acinetobacter baumannii ACICU]
 gi|213156580|ref|YP_002318241.1| signal recognition particle protein [Acinetobacter baumannii
           AB0057]
 gi|215484476|ref|YP_002326711.1| signal recognition particle protein [Acinetobacter baumannii
           AB307-0294]
 gi|260555692|ref|ZP_05827912.1| signal recognition particle protein [Acinetobacter baumannii ATCC
           19606]
 gi|301347727|ref|ZP_07228468.1| signal recognition particle protein [Acinetobacter baumannii AB056]
 gi|301512475|ref|ZP_07237712.1| signal recognition particle protein [Acinetobacter baumannii AB058]
 gi|301594393|ref|ZP_07239401.1| signal recognition particle protein [Acinetobacter baumannii AB059]
 gi|332852104|ref|ZP_08433931.1| signal recognition particle protein [Acinetobacter baumannii
           6013150]
 gi|332867502|ref|ZP_08437655.1| signal recognition particle protein [Acinetobacter baumannii
           6013113]
 gi|332872647|ref|ZP_08440615.1| signal recognition particle protein [Acinetobacter baumannii
           6014059]
 gi|169149943|emb|CAM87837.1| 4.5S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Acinetobacter
           baumannii AYE]
 gi|169152931|emb|CAP01972.1| 4.5S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Acinetobacter
           baumannii]
 gi|183208665|gb|ACC56063.1| Signal recognition particle GTPase [Acinetobacter baumannii ACICU]
 gi|213055740|gb|ACJ40642.1| signal recognition particle protein [Acinetobacter baumannii
           AB0057]
 gi|213988852|gb|ACJ59151.1| signal recognition particle protein [Acinetobacter baumannii
           AB307-0294]
 gi|260410603|gb|EEX03901.1| signal recognition particle protein [Acinetobacter baumannii ATCC
           19606]
 gi|322506970|gb|ADX02424.1| Signal recognition particle GTPase [Acinetobacter baumannii 1656-2]
 gi|323516837|gb|ADX91218.1| Signal recognition particle GTPase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332729476|gb|EGJ60815.1| signal recognition particle protein [Acinetobacter baumannii
           6013150]
 gi|332733919|gb|EGJ65064.1| signal recognition particle protein [Acinetobacter baumannii
           6013113]
 gi|332739176|gb|EGJ70035.1| signal recognition particle protein [Acinetobacter baumannii
           6014059]
          Length = 469

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ-----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V  Q       +  V + + KM+   ++  +   +  P V+L+ G+ G GKTT   KL
Sbjct: 62  QEVMTQLSPGQAFVKIVYDELTKMMGEANETLDLS-AKPPVVVLLAGLQGAGKTTTAAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM  + D +R AAI QL+  +    A F+ S+       +   A +QA+
Sbjct: 121 ARFLKERQKKKVMTVSADVYRPAAIKQLETVSAEVGAGFIPSDPSEKPIDIVNRAIEQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 IQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF     +  I
Sbjct: 235 AFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPDRVAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|163941583|ref|YP_001646467.1| signal recognition particle protein [Bacillus weihenstephanensis
           KBAB4]
 gi|229013028|ref|ZP_04170193.1| Signal recognition particle protein [Bacillus mycoides DSM 2048]
 gi|229061448|ref|ZP_04198793.1| Signal recognition particle protein [Bacillus cereus AH603]
 gi|229134653|ref|ZP_04263462.1| Signal recognition particle protein [Bacillus cereus BDRD-ST196]
 gi|229168584|ref|ZP_04296307.1| Signal recognition particle protein [Bacillus cereus AH621]
 gi|163863780|gb|ABY44839.1| signal recognition particle protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228614990|gb|EEK72092.1| Signal recognition particle protein [Bacillus cereus AH621]
 gi|228648699|gb|EEL04725.1| Signal recognition particle protein [Bacillus cereus BDRD-ST196]
 gi|228717871|gb|EEL69519.1| Signal recognition particle protein [Bacillus cereus AH603]
 gi|228748282|gb|EEL98142.1| Signal recognition particle protein [Bacillus mycoides DSM 2048]
          Length = 449

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFIKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKIVQEELTELMGGEQSKIAV-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMGELAKVKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ +E F  +  ++ 
Sbjct: 235 QSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|257086986|ref|ZP_05581347.1| signal recognition particle protein [Enterococcus faecalis D6]
 gi|256995016|gb|EEU82318.1| signal recognition particle protein [Enterococcus faecalis D6]
 gi|315027856|gb|EFT39788.1| signal recognition particle protein [Enterococcus faecalis TX2137]
          Length = 472

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +  V+E   E+   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E + K L   +   N      P VI++ G+ G GKTT  GK
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKS-PKIPTVIMMTGLQGAGKTTFTGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K +      + +L AGD +R AAIDQLK+   +           ++   +  +    A
Sbjct: 121 LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQLEVPVFDMGTDANPVEIVRQGLALA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D ++IDTAGRLH +  LM  + ++  +        P+ +L V+DA TGQ+A+   
Sbjct: 181 KEKKNDYVLIDTAGRLHIDEALMDELKQIKELAN------PNEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     S+ 
Sbjct: 235 DSFNEQLGITGVVITKMDGDTRGGAALSIRAVTSAPIKFVGSGEKLTDLEIFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|256422107|ref|YP_003122760.1| signal recognition particle-docking protein FtsY [Chitinophaga
           pinensis DSM 2588]
 gi|256037015|gb|ACU60559.1| signal recognition particle-docking protein FtsY [Chitinophaga
           pinensis DSM 2588]
          Length = 320

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 125/317 (39%), Positives = 182/317 (57%), Gaps = 17/317 (5%)

Query: 11  LSWIRKL---------TKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S+  KL          +G   T       I   I     +D  V + LE+ L+ +D+GV
Sbjct: 1   MSFFNKLFSREKKESLDQGLQKTKDSFLTKIGRAIAGKTTVDTEVLDSLEEALVSADVGV 60

Query: 61  AVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVI 114
               +I++ +  KR +KD  +    +   + E I  +L+       + F+     +P+VI
Sbjct: 61  DTTVQIIDRI-EKRVSKDKYLGTAELNKILQEEIAGLLVDAPDSGFRDFDVPADKKPYVI 119

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +VVGVNGVGKTT IGKL+     AG  V+L A DTFR+AA+DQL IW+DR     V  ++
Sbjct: 120 MVVGVNGVGKTTTIGKLAYNFKKAGKSVLLGAADTFRAAAVDQLTIWSDRVGVPIVKQQM 179

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD  A+A++  +   AK  +V+IIDTAGRLHN + LM  + K+ RV+K++ P APH VL
Sbjct: 180 GSDPGAVAFDTVQSGAAKGSEVIIIDTAGRLHNKAHLMDELSKIKRVMKKVIPDAPHEVL 239

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLD +TGQNAL Q   F A    T L +TK+DGTA+GG ++ I    KIPV ++G+GE 
Sbjct: 240 LVLDGSTGQNALEQARHFTAATEVTALAITKLDGTAKGGVVLAIANQFKIPVKYIGIGEK 299

Query: 295 INDLEPFVAKDFSAVIT 311
           + DL+ F  ++F   + 
Sbjct: 300 MEDLQVFSKEEFVDSLF 316


>gi|242277674|ref|YP_002989803.1| signal recognition particle protein [Desulfovibrio salexigens DSM
           2638]
 gi|242120568|gb|ACS78264.1| signal recognition particle protein [Desulfovibrio salexigens DSM
           2638]
          Length = 505

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L E   +     RLD+        E+   L+ +D+   V +  VE++  +   
Sbjct: 2   FDSLSDRLSEAFKNFKGQGRLDEKNIQAGLREVRLALLEADVNYKVVKDFVEKVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V++ + ++L    +        +   I++VG+ G GKTT   K+
Sbjct: 62  QEVQKSLSPGQQVIKVVNDELTELLGGEQEGLQL-TKGKLSKIMMVGLQGSGKTTSSAKI 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +     K  L   D +R AAIDQL + A +       S    +   +  +A  +A+ 
Sbjct: 121 ALYLRRKKFKPYLVPADVYRPAAIDQLHVLAKQLDMPAYPSTTEMNPVDICRDAMVKAEE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL+ DTAGRLH +  LM  +  +           P  +L V DA TGQ+A+     
Sbjct: 181 AGCDVLLFDTAGRLHIDEPLMEELSSIKEHCS------PDEILFVADAMTGQDAVNVAST 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TKMDG ARGG  + I       V F+GVGE +++LE F     ++ I 
Sbjct: 235 FDDKLDVTGVVLTKMDGDARGGAALSIKSVTGKSVKFVGVGEKLSELELFYPDRAASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|257066792|ref|YP_003153048.1| signal recognition particle protein [Anaerococcus prevotii DSM
           20548]
 gi|256798672|gb|ACV29327.1| signal recognition particle protein [Anaerococcus prevotii DSM
           20548]
          Length = 445

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 147/304 (48%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E +  +    +L     D    E+   L+ +D+   V +  V+ +  +   
Sbjct: 3   FEGLSERLQETLGKLTGKGKLSEKDIDAAMREIRLSLLEADVNYKVVKDFVKTIKERSLG 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E +  ++   +   +   S  PH++++VG+ G GKTT  GKL
Sbjct: 63  QDVMTSLSPGQMVVKIVNEELTALMGKENSKLDLKGS-TPHMVMMVGLQGSGKTTHSGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+       ML A D +R AAI+QLK+       +    +   D    A EA   A+ 
Sbjct: 122 ALKLKKENRNPMLTALDIYRPAAIEQLKVVGKTAGVEVF-DKDKQDPVKTAREAKDYARL 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  ++ LM  +  +   +       P  +L V+DA TGQ A+   + 
Sbjct: 181 NNHDVVILDTAGRLQIDTDLMDELKNIKEAVN------PDEILLVVDAMTGQEAVNVAKT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG ARGG  + I      P+ F+GVGE + DLEPF     +  I 
Sbjct: 235 FDDYLDITGVVLTKLDGDARGGAALSIRQVVGKPIKFIGVGEKLEDLEPFHPDRMANRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|313888464|ref|ZP_07822131.1| signal recognition particle-docking protein FtsY [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845493|gb|EFR32887.1| signal recognition particle-docking protein FtsY [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 491

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 122/304 (40%), Positives = 182/304 (59%), Gaps = 6/304 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S  ++L +G   T  ++   I  ++ +  ++DD + E+LED+LI +DIG+    K+++ L
Sbjct: 191 SLFQRLKEGLDKTRKEVGIKINTVLGAYVKIDDEMLEDLEDILISADIGMETTMKLIDNL 250

Query: 71  LTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                 + ++  + +  +  +E    M   L+ P   +    P +ILVVGVNGVGKTT I
Sbjct: 251 RETIIREKINDPQEVKPLLMAEAKKLMNPELNTPIKTE---PPVIILVVGVNGVGKTTTI 307

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS +    G  V++ A DTFR+AAIDQLK W +R   D +    GSD AA+ ++A + 
Sbjct: 308 GKLSSRFKREGKSVLVCAADTFRAAAIDQLKEWGNRAHVDIISHAEGSDPAAVVFDAIEA 367

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+K DVLI+DTAGRLHN S LM  + K+ R++    P A    L VLD+TTGQNA+ Q
Sbjct: 368 AKARKTDVLIVDTAGRLHNKSNLMKELEKINRIISNKFPEANRENLLVLDSTTGQNAINQ 427

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+ +TK+DGTA+GG ++ +     IP+  +GVGEGI+DL+ F   +F  
Sbjct: 428 AKTFREATDITGIALTKLDGTAKGGVVVALQSELGIPIKLIGVGEGIDDLQDFNIDNFLE 487

Query: 309 VITG 312
            I G
Sbjct: 488 TIFG 491


>gi|56968646|gb|AAW32279.1| Ffh [Streptococcus mutans]
          Length = 516

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++   R+L +     V +E+   L+ +D+ + V ++ ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E +  +L   +       S  P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIVMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +   QA
Sbjct: 121 LANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 KENRNDYVLIDTAGRLQIDEKLMTELRDIKALAN------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|312888456|ref|ZP_07748030.1| signal recognition particle-docking protein FtsY [Mucilaginibacter
           paludis DSM 18603]
 gi|311299084|gb|EFQ76179.1| signal recognition particle-docking protein FtsY [Mucilaginibacter
           paludis DSM 18603]
          Length = 321

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/300 (41%), Positives = 181/300 (60%), Gaps = 5/300 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L  G   T       IT  ++ +  +DD V +ELE++L+ SD+GV    KI++ +  +  
Sbjct: 20  LDTGLEKTKENFFSKITKAVAGKTTVDDDVLDELEEILVTSDVGVTTTLKIIDRIQARVA 79

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKL 131
             K +    +   + + I ++L   +     +F    H+P+VI+VVGVNGVGKTT IGKL
Sbjct: 80  RDKYLGTSELNNLLRDEIQQLLAENNSNDFQNFEYGQHKPYVIMVVGVNGVGKTTTIGKL 139

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+  AG +V+L A DTFR+AA+DQ+K+W +R     V   +GSD A++A++  K A A
Sbjct: 140 AHKLKQAGNQVVLGAADTFRAAAVDQIKLWGERVGVRVVAQPMGSDPASVAFDTLKSAVA 199

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRLHN   LM  + K+  V+ ++ P APH +L VLDA+TGQNA+ Q + 
Sbjct: 200 NNDDVVIIDTAGRLHNKVNLMNELTKIKNVMLKVIPDAPHEILLVLDASTGQNAIEQCKQ 259

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        L +TK+DGTA+GG +I I    KIPV ++GVGE +NDL+ F  K F   + 
Sbjct: 260 FTQATDVNALALTKLDGTAKGGVVIGISDQFKIPVKYIGVGEAMNDLQLFDRKGFVDSLF 319


>gi|237785768|ref|YP_002906473.1| signal recognition particle protein [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758680|gb|ACR17930.1| signal recognition particle protein [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 538

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/330 (26%), Positives = 146/330 (44%), Gaps = 36/330 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FESLSDRLTGALKGLRGKGRLTESDINATAREIRLALLEADVSLPVVRAFIKNIKARATG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++       + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPAQQVVKIVNEELIGILGGETRRLQL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           +  +   G   ML A D  R  A+ QL+I   R        +                 D
Sbjct: 121 AHHLKKQGHTPMLVACDLQRPGAVQQLEIVGQRADVPTFAPDPGTRTDTVEHEMGQSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++AQ  K DV+IIDTAGRL  + +LM     +       D   P  VL V+
Sbjct: 181 PVGVATAGIEEAQRTKHDVVIIDTAGRLGIDEVLMKQARDI------RDATNPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+A+   + F      TG+++TK+DG ARGG  + I      P+ ++  GE ++D
Sbjct: 235 DSMIGQDAVHTADAFREGVDFTGVVLTKLDGDARGGAALSIREVTGKPILYVSTGEKLDD 294

Query: 298 LEPFVAKDFSAVITGCLD------YGEEKI 321
            + F     +  I G  D        E+KI
Sbjct: 295 FDVFHPDRMANRILGMGDVLTLIEQAEQKI 324


>gi|196247664|ref|ZP_03146366.1| signal recognition particle protein [Geobacillus sp. G11MC16]
 gi|196212448|gb|EDY07205.1| signal recognition particle protein [Geobacillus sp. G11MC16]
          Length = 433

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 145/294 (49%), Gaps = 17/294 (5%)

Query: 32  ITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQ 82
           +  I    ++ +     +  E+   L+ +D+   V +  ++ +  +   ++V       Q
Sbjct: 1   MNRIRGKGKVTEADVKEMMREVRLALLEADVNFKVVKDFIKRVSERAVGQEVLKSLTPGQ 60

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLK 141
           +V+  V E +  ++              P V+++VG+ G GKTT  GKL+  +      K
Sbjct: 61  QVIKVVKEELTALMGGEQSKIAV-AKKPPTVVMMVGLQGAGKTTTTGKLANLLRKRHNRK 119

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            +L A D +R AAI QL+    + +         ++   +A +A ++A+ +  D ++IDT
Sbjct: 120 PLLVAADVYRPAAIKQLETLGKQLNMPVFSLGEHANPVEIAKQALERAKEEHHDYVLIDT 179

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH +  LM  + +M   +K      P  +  V+DA TGQ+A+   + FH   G TG+
Sbjct: 180 AGRLHVDEALMDELKQMREAVK------PDEIFLVVDAMTGQDAVNVAQSFHEQLGITGV 233

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I+TK+DG  RGG  + I      P+ F+G+GE ++ LEPF  +  ++ I G  D
Sbjct: 234 ILTKLDGDTRGGAALSIRAVTGAPIKFVGMGEKLDALEPFHPERMASRILGMGD 287


>gi|17229444|ref|NP_485992.1| signal recognition particle protein [Nostoc sp. PCC 7120]
 gi|17131042|dbj|BAB73651.1| signal recognition particle protein [Nostoc sp. PCC 7120]
          Length = 490

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/308 (28%), Positives = 148/308 (48%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L     S   KL+    D IS   + D +RE +   L+ +D+ + V +  + E+  
Sbjct: 1   MFDALADRLESAWKKLRGQ--DKISESNIQDALRE-VRRALLEADVNLQVVKDFISEVEA 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K    +V       Q+ +  V + + +++   + P   +   +P ++L+ G+ G GKTT 
Sbjct: 58  KAQGAEVISGVRPDQQFIKIVYDELVQVMGEENVPL-AEVEQKPTIVLMAGLQGTGKTTA 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+  +       +L A D +R AAIDQL     +           +D   +A +  +
Sbjct: 117 TAKLALHLRKLERSCLLVATDVYRPAAIDQLLTLGKQIDVPVFELGSDADPVEIARQGVE 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+A+ V+ +IIDTAGRL  +  +MA + ++   ++      PH  L V+D+ TGQ A  
Sbjct: 177 RAKAEGVNTVIIDTAGRLQIDEDMMAELARIKETVQ------PHETLLVVDSMTGQEAAN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               FH   G TG I+TKMDG +RGG  + +      P+ F+GVGE +  L+PF     +
Sbjct: 231 LTRTFHEQIGITGAILTKMDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPDRMA 290

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 291 SRILGMGD 298


>gi|197121124|ref|YP_002133075.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           sp. K]
 gi|196170973|gb|ACG71946.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           sp. K]
          Length = 469

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/304 (40%), Positives = 182/304 (59%), Gaps = 8/304 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + L  G   T       +  + +  ++ DD V  +LE++L  +DIGV  A +++E    K
Sbjct: 166 KTLAAGLEKTRGGFMARLNALFAGGKVVDDAVLADLEEVLFTADIGVKTATRLLESAREK 225

Query: 74  RYAKDVSVQRVLYD-VSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
              K++S    L   + E I ++L        + P     + RP V++VVGVNG GKTT 
Sbjct: 226 VRRKELSDPERLKAALREEIARILDLAGTGGAAAPLAVGEA-RPWVVMVVGVNGSGKTTT 284

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +GKL+ K+  AG KV+L AGDTFR+AA +QL++WA+R SA  V  + G+D AA+ +EA +
Sbjct: 285 VGKLAAKLQGAGHKVLLGAGDTFRAAAGEQLEVWAERVSAPVVRGKEGADPAAVCFEAVQ 344

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +   + VDV++ DTAGRLH    LM  + K+ RV+ +    APH VL VLDAT GQNA+ 
Sbjct: 345 RGAQEGVDVVLCDTAGRLHTKMPLMEELKKVQRVIGKAAAGAPHEVLLVLDATNGQNAIA 404

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   FH   G TG+ +TK+DGTA+GG +I I    +IPV ++GVGE + DL+PF  ++F 
Sbjct: 405 QARQFHEALGVTGIALTKLDGTAKGGVIIGICDELRIPVRYVGVGERVADLKPFSPREFV 464

Query: 308 AVIT 311
             + 
Sbjct: 465 EALF 468


>gi|125623722|ref|YP_001032205.1| signal recognition particle protein [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124492530|emb|CAL97473.1| signal recognition particle protein [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300070491|gb|ADJ59891.1| signal recognition particle protein [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 518

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L+    ++   +++ +     + +E+   L+ +D+ + V +K ++ +  +  
Sbjct: 2   AFENLTERLQNVFKNLRGKKKITEADVTEITKEIRVALLEADVALPVVKKFIKAIRERAV 61

Query: 76  AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +VS      Q+V+  V E +  +L              P +I++VG+ G GKTT  GK
Sbjct: 62  GIEVSEALNPAQQVIKIVDEELTTILGGGEAEL-LKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+KK+ +    + ++ A D +R AAIDQLK   ++                +      +A
Sbjct: 121 LAKKLKEEQNARPLMIAADVYRPAAIDQLKTLGEQLDIPVYDEGTSEKPVNIVRNGLLKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q ++ D ++IDTAGRL  +  LM  + ++  +        P  +L V+DA TGQ A +  
Sbjct: 181 QEERKDYVLIDTAGRLEIDDTLMNELQEIKAL------AQPTEILLVVDAMTGQVAAQVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F G GE + DLE F     S+ 
Sbjct: 235 KTFDEKLDITGVIITKLDGDTRGGAALSIREITGKPIKFTGTGEKLTDLEVFYPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|258406146|ref|YP_003198888.1| signal recognition particle protein [Desulfohalobium retbaense DSM
           5692]
 gi|257798373|gb|ACV69310.1| signal recognition particle protein [Desulfohalobium retbaense DSM
           5692]
          Length = 493

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      I    RLD+        E+   L+ +D+   V +   + +  +   
Sbjct: 2   FDTLSDRLDSIFKRIKGQGRLDEKAIQEGLREVRLALLEADVNFKVVKTFTDRVRERAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V E +  +L    +  N      P VI++VG+ G GKTT   KL
Sbjct: 62  QEVLSSLTPGQQVIKIVHEEMIDLLGGSQEGLNLKGPA-PRVIMLVGLQGSGKTTSSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++       +L   D +R AAIDQL   A         S    +   +  +A ++A+ 
Sbjct: 121 ALQLRRDNHAPLLVPADVYRPAAIDQLHRLASEIDIPAYPSTSEMNPVDICRDALEKARE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +++DTAGRLH +  LM  + ++  V       AP  +L V DA TGQ+A+   E 
Sbjct: 181 NGQDTVLLDTAGRLHVDEKLMDELARIKEVC------APSEILLVADAMTGQDAVNVAER 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+++TKM+G ARGG  + I      P+ ++GVGE + D+E F     ++ I 
Sbjct: 235 FDELLDLTGVVLTKMEGDARGGAALSIKSITGKPIKYMGVGEKLKDIEAFYPDRVASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|315633590|ref|ZP_07888880.1| signal recognition particle protein [Aggregatibacter segnis ATCC
           33393]
 gi|315477632|gb|EFU68374.1| signal recognition particle protein [Aggregatibacter segnis ATCC
           33393]
          Length = 459

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLSDRLSKTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINNVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVNKSLTPGQEFVKIVQAELEAAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A   + DF  S++      +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQAVNVDFFPSDVKQKPVDIAKAALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +S +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDSEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|270158016|ref|ZP_06186673.1| cell division protein FtsY [Legionella longbeachae D-4968]
 gi|289163717|ref|YP_003453855.1| Cell division protein FtsY homolog [Legionella longbeachae NSW150]
 gi|269990041|gb|EEZ96295.1| cell division protein FtsY [Legionella longbeachae D-4968]
 gi|288856890|emb|CBJ10701.1| Cell division protein FtsY homolog [Legionella longbeachae NSW150]
          Length = 350

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 187/313 (59%), Gaps = 3/313 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGV 60
           + Q+       +  +  K  + T  +L +GI  ++   + +   + +ELE LLI +D+G+
Sbjct: 34  AEQEQEPVKEGFFARFRKSLSKTRHQLGDGIGRLLLGKKEISQELLDELETLLISADLGI 93

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWD-FSHRPHVILVVG 118
              Q ++ +L      K +S    +Y+ +   +  +L   ++    +   H P VIL+VG
Sbjct: 94  ETTQAVLNQLTEGLARKQLSDGNAVYEALKSYLQGILKQKNQSLTLETADHSPFVILMVG 153

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL +W +R     +    G+D+
Sbjct: 154 VNGAGKTTTIGKLAKQFQQQGKKVMLAAGDTFRAAAVEQLLVWGERNDIPVIAQHTGADS 213

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ ++A + A+A+K+DVLI DTAGRLH  S LM  + K+ RVL++L P APH  + +LD
Sbjct: 214 ASVIFDALQAAKARKMDVLIADTAGRLHTQSNLMEELKKVKRVLQKLSPDAPHETMLILD 273

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A+ GQNAL Q   F+   G TG+ MTK+DGTA+GG L  I     IP  ++G+GEGI DL
Sbjct: 274 ASIGQNALVQARQFNEAIGLTGVTMTKLDGTAKGGILFAIANELGIPFRYIGIGEGIEDL 333

Query: 299 EPFVAKDFSAVIT 311
           +PF A  F   + 
Sbjct: 334 QPFDAAQFVGALF 346


>gi|229031475|ref|ZP_04187475.1| Signal recognition particle protein [Bacillus cereus AH1271]
 gi|229174511|ref|ZP_04302043.1| Signal recognition particle protein [Bacillus cereus MM3]
 gi|228609071|gb|EEK66361.1| Signal recognition particle protein [Bacillus cereus MM3]
 gi|228729764|gb|EEL80744.1| Signal recognition particle protein [Bacillus cereus AH1271]
          Length = 449

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMTSLTPGQQVIKVVQEELTELMGGEQSKIAV-ANRPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ +E F  +  ++ 
Sbjct: 235 QSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|197119794|ref|YP_002140221.1| signal recognition particle protein [Geobacter bemidjiensis Bem]
 gi|197089154|gb|ACH40425.1| signal recognition particle protein [Geobacter bemidjiensis Bem]
          Length = 453

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S KL      +     + ++ V++ L +    L+ +D+   V ++ VE++  +   
Sbjct: 2   FATLSDKLDLVFKKLRGQGVMTEENVKDALREVRLALLEADVNFKVVKEFVEKVRGRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V + +  ++           +  P  I++VG+ G GKTT  GKL
Sbjct: 62  TEVLQSLAPGQQVIKIVHDELVLLMGGEEDNSLDLAAKPPVAIMLVGLQGAGKTTSCGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K +L   D +R AAI+QLK+   +   +   SE       +   A + A  
Sbjct: 122 AKFLKAQRKKPLLVPADVYRPAAIEQLKVLGRQLDIEVFGSEATQKPLEICRAAHRYATL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I DTAGR   +  LM  +  +       D  AP  +L V DA TGQ A+     
Sbjct: 182 NGFDVVIFDTAGRHQIDDYLMNELEGI------RDELAPREILFVADAMTGQEAVNVASG 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+I+TK+DG A+GG  + I      PV F+G+GE ++ L+ F A    + I 
Sbjct: 236 FNDRLGITGVILTKLDGDAKGGAALSIKAVTGKPVKFVGLGEKLDALDVFHADRLVSRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|291459095|ref|ZP_06598485.1| signal recognition particle protein [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291418349|gb|EFE92068.1| signal recognition particle protein [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 458

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 139/305 (45%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L    + +    RL +        E+   L+ +D+   + +    ++  K  
Sbjct: 2   AFENLTDRLSNIFSGLSGKGRLTEDDVNAALREIRMALLEADVNFKLVKDFTAKVKEKAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + +M+   +            VI++VG+ G GKTT   K
Sbjct: 62  GEDVMHSLTPAQMVVKIVNEELTEMMGSETTEIRLRPQSEISVIMMVGLQGAGKTTSAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K      K +L A D +R AAIDQL++ A++    F           +A  + + A+
Sbjct: 122 LAGKFKKQHRKPLLVACDVYRPAAIDQLRVNAEKQEVPFFSLGDKLSPVEIARRSLEYAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  +++IIDTAGRL  +  LM  +  + + +           +  +DA TGQ A+   E
Sbjct: 182 EQGQNLVIIDTAGRLQIDERLMKELQDIKKAV------RVDWSILTVDAMTGQEAVNVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I+TK DG  RGG  + I      P+ +LG+GE ++DLE F     +  I
Sbjct: 236 SFSEKVGIDGVILTKCDGDTRGGAALSIRAMCGKPILYLGMGEKLSDLEQFYPDRMAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|328957317|ref|YP_004374703.1| signal recognition particle-like (SRP) GTPase [Carnobacterium sp.
           17-4]
 gi|328673641|gb|AEB29687.1| signal recognition particle-like (SRP) GTPase [Carnobacterium sp.
           17-4]
          Length = 475

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  +T +    ++ +  V+E   E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLTERLQNAMTKMRRKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKTVSARAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E + +++              P V+++VG+ G GKTT  GK
Sbjct: 62  GSEVLDSLSPGQQVIKIVNEELTELMGGEQATIQTS-PKAPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L A D +R AAI QL+    +                +A +  ++A
Sbjct: 121 LASYLRKNQNKRPLLIAADIYRPAAIQQLETIGKQLDVPVFSMGDQVSPVEIARQGIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D ++IDTAGRL  +  LM  +  +           P  +  V+DA TGQ A    
Sbjct: 181 KAEHLDFVLIDTAGRLQIDETLMQELSDIKET------SQPTEIFLVVDAMTGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + I      P+ F G GE ++ LEPF  +  +  
Sbjct: 235 SSFNEQLDITGVILTKLDGDTRGGAALSIRAVTGKPIKFTGSGEKLDALEPFYPERMANR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|191638591|ref|YP_001987757.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           casei BL23]
 gi|190712893|emb|CAQ66899.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           casei BL23]
 gi|327382633|gb|AEA54109.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           casei LC2W]
 gi|327385827|gb|AEA57301.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           casei BD-II]
          Length = 331

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 108/302 (35%), Positives = 170/302 (56%), Gaps = 5/302 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +G   +     E +  + ++ R +D+   + LE++LI SD+G   A K+ ++L  +
Sbjct: 22  NKYDEGLEKSRSSFGEKLNALFANFRSVDEDFFDNLEEMLIESDVGFETAVKLSDDLREE 81

Query: 74  RYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIG 129
              K+    + +  V  E +  M     K  +         P V L VGVNG GKTT +G
Sbjct: 82  VKLKNAKDPKAVSHVIVEKLVDMYGDAGKDEDNALHFAESGPSVFLFVGVNGAGKTTTVG 141

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ ++ + G +V+L A DTFR+ AI QL+ W  R     V ++ G D AA+ ++  K+A
Sbjct: 142 KLAHQLKEEGKRVLLVAADTFRAGAIQQLQEWGRRVDVPVVATKEGGDPAAVVFDGVKRA 201

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + ++ DV+++DTAGRL N   LM  + K+ RV+ R  P AP  VL VLDATTGQNAL Q 
Sbjct: 202 KDEQFDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQNALNQA 261

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG+ +GG ++ I     +PV  +G+GE ++DL+ F    F A 
Sbjct: 262 KEFNQTTKITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDPTKFVAG 321

Query: 310 IT 311
           + 
Sbjct: 322 LF 323


>gi|146297160|ref|YP_001180931.1| signal recognition particle protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410736|gb|ABP67740.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 443

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S S KL++    +    +L +       +E++  L+ +D+   V +  +  +  K   
Sbjct: 2   FSSLSEKLQDVFKKLRGKGKLTEKDIKDAMKEVKLALLEADVNYKVVKDFINTVTQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + +  +L        +  S    + ++VG+ G GKTT  GKL
Sbjct: 62  EEVLESLTPAQQVIKIVYDEMVNLLGGNDTKLTFSPSGF-SIYMMVGLQGSGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G K +L A D +R AAI QL++ A++            DA  +A E    A++
Sbjct: 121 AALLKKQGKKPLLIACDIYRPAAIKQLEVVAEKVGVSCYADYDKKDAVKIAVEGVNFAKS 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            + D+ I+DTAGRLH N  LM  +  +   +K      P  +L VLDA TGQ+A+   E 
Sbjct: 181 NRFDIAIVDTAGRLHINEELMNELVAIKSAIK------PTEILLVLDAMTGQDAVNVAEA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+IMTK+DG  RGG  + +      P+ F G+GE + DLE F     ++ I 
Sbjct: 235 FNNQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGMGEKMEDLEVFYPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|323700095|ref|ZP_08112007.1| signal recognition particle protein [Desulfovibrio sp. ND132]
 gi|323460027|gb|EGB15892.1| signal recognition particle protein [Desulfovibrio desulfuricans
           ND132]
          Length = 509

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 150/306 (49%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L    + +   + LD+  ++E L +    L+ +D+   V ++ V+++  +   
Sbjct: 2   FESLQERLGATFSRLGGKKTLDENNIKEGLREVRLALLEADVNFKVVKRFVDQVKERALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q  +  V+E + ++L    +  + D   RP  +++VG+ G GKTT  GK+
Sbjct: 62  DEVLKGLEPGQHFIKIVNEELIELLGG--EQQDLDLKARPLKLMMVGLQGSGKTTSSGKI 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +    G K  L   D +R AAIDQL   A +       S    +   +  +A  +A+
Sbjct: 120 ALFLRKQHGKKPYLVPADVYRPAAIDQLNTLARQLDVPVYPSTTDMNPVDICKDALVKAE 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D+++ DTAGRLH +  LM  +  + R  +      P  +L V DA TGQ+A+   E
Sbjct: 180 ELGCDLILFDTAGRLHIDEKLMDELANIKRECQ------PQEILFVADAMTGQDAVTVAE 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+++TKMDG ARGG  + I       V F+GVGE +++LE F     ++ I
Sbjct: 234 SFNDKLGITGVVLTKMDGDARGGAALSIKTVTGRSVKFVGVGEKLSELELFHPDRIASRI 293

Query: 311 TGCLDY 316
            G  D 
Sbjct: 294 LGMGDM 299


>gi|195645948|gb|ACG42442.1| cell division protein ftsY [Zea mays]
          Length = 362

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 186/311 (59%), Gaps = 6/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL--DDGVREELEDLLIRSDIGVAVA 63
           +  ++ S + KL  GF+ T   L   + ++++   L   D V ++LE+ L+ SD G  ++
Sbjct: 52  IKEKAKSDVEKLFSGFSKTRENLS-VVDELLTYWNLADTDRVLDDLEEALLVSDFGPKIS 110

Query: 64  QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
            +IV+ L  + R  K  S   +   +   I ++L         +    +P VI++VGVNG
Sbjct: 111 FRIVDTLREEIRDGKLKSCAEIKAALKRCILELLTSKGGNSELNLGFRKPAVIMIVGVNG 170

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAA 180
            GKTT +GKL+ +  + G+KV++AAGDTFR+AA DQL++WA+RT ++ V   +  +   A
Sbjct: 171 GGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAQPPA 230

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A K+ + +  DV++ DT+GRLH N  LM  +    +VL +  P AP+ +L VLD T
Sbjct: 231 VLSQAVKRGKREGFDVVLCDTSGRLHTNYGLMEELVSCKKVLAKALPGAPNEILLVLDGT 290

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L+Q   F+ V G TG I+TK+DGTARGG ++ +V    IPV F+GVGEG+ DL+P
Sbjct: 291 TGLNMLQQAREFNDVVGVTGFILTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQP 350

Query: 301 FVAKDFSAVIT 311
           F A+ F   I 
Sbjct: 351 FDAEAFVEAIF 361


>gi|33240809|ref|NP_875751.1| signal recognition particle protein [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238338|gb|AAQ00404.1| Signal recognition particle GTPase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 485

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++ +       +++   L+ +D+ ++V ++ V+E+  K   
Sbjct: 2   FDELSARFEDAVKGLRGENKISEDNVDIALKQVRRALLEADVSLSVVKQFVQEVRDKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + +++   + P   D + +P VIL+ G+ G GKTT   KL
Sbjct: 62  AEVVRGVNPGQKFIEVVHQELVEVMGGANSPL-ADSTKKPSVILMAGLQGAGKTTAAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + D GLK ++ A D +R AAIDQL     + + +       S    +A    K+AQ 
Sbjct: 121 GLYLKDKGLKPLMVAADVYRPAAIDQLNTLGKQINVEVFSLGKESKPEDIAASGLKKAQE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D LI+DTAGRL  +  +M     M+R+   +DP     VL V+D+  GQ A      
Sbjct: 181 EDFDTLIVDTAGRLQIDEEMMNE---MVRIRSAVDP---DEVLLVVDSMIGQEAADLTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  +  I 
Sbjct: 235 FHEKVGITGAVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMAGRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|30249431|ref|NP_841501.1| Signal recognition particle GTPase ffh protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138794|emb|CAD85371.1| Signal recognition particle GTPase ffh protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 448

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 154/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + I  +    RL +        E+   LI +D+ + V +  +E++  +   
Sbjct: 2   FDNLTERLSDVIKTLRGEARLTESNIQDALREVRMALIEADVALPVIKIFIEQVKQRAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V E +  ++       N + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  HEVLDKLSPGQALIGVVHEELVAIMGGDKAELNLNVA-PPAVILMAGLQGAGKTTSSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K + D   KV+L + D +R AAIDQL + A++T ADF   + G   A +   A   A+ 
Sbjct: 121 AKWLMDQKKKVLLVSCDVYRPAAIDQLALLAEQTGADFFPVQTGRQPAEICTAALDFARK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  +  +M  I ++ ++LK          L V+DA  GQ+A+   + 
Sbjct: 181 HHHDVVIVDTAGRLGIDEAMMREISQLEQLLKPA------ETLFVVDAMQGQDAVNTAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  V   TG+I+TK+DG ARGG  + +      P+ F GV E +N LEPF     ++ I 
Sbjct: 235 FAEVLPLTGVILTKLDGDARGGAALSVRHITGKPIKFAGVAEKLNGLEPFYPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|322376834|ref|ZP_08051327.1| signal recognition particle protein [Streptococcus sp. M334]
 gi|321282641|gb|EFX59648.1| signal recognition particle protein [Streptococcus sp. M334]
          Length = 523

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ ++V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALSVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNTQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|70728475|ref|YP_258224.1| signal recognition particle protein [Pseudomonas fluorescens Pf-5]
 gi|68342774|gb|AAY90380.1| signal recognition particle protein [Pseudomonas fluorescens Pf-5]
          Length = 458

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N      P V+L+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAV-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++  + D +R AAI QL+  A+     F  S++     A+A  A K+A+
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDLSQKPVAIAEAAIKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +S +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHIDSEMMDEIQALHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF  +  ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|325280250|ref|YP_004252792.1| signal recognition particle-docking protein FtsY [Odoribacter
           splanchnicus DSM 20712]
 gi|324312059|gb|ADY32612.1| signal recognition particle-docking protein FtsY [Odoribacter
           splanchnicus DSM 20712]
          Length = 330

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 125/303 (41%), Positives = 180/303 (59%), Gaps = 6/303 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             L KG   T   + + +  ++    ++DD V + LE++LI SD+GV    +I+E +  +
Sbjct: 27  ENLNKGLEKTKESVFKKLARVVVGKSKVDDEVLDNLEEVLITSDVGVETTVRIIERIEER 86

Query: 74  RYA-KDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
               K + V  +   + E I  +L       +  F    +  P+VI+VVGVNGVGKTT I
Sbjct: 87  VQRDKYMGVDELNRVLKEEIVALLKENTVNDAASFELPENGVPYVIMVVGVNGVGKTTTI 146

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ K  +AG KV+L A DTFR+AA+DQL IWADR     V   +G+D A++AY+   +
Sbjct: 147 GKLAYKFKEAGKKVVLGAADTFRAAAVDQLVIWADRVGVPIVKQAMGADPASVAYDTLSK 206

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP+ VL VLD +TGQNA  Q
Sbjct: 207 AKADGADVVIIDTAGRLHNKINLMNELTKIKNVMKKVLPEAPNEVLLVLDGSTGQNAYEQ 266

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F        L +TK+DGTA+GG +I I    KIPV ++G+GE I DL+ F  ++F  
Sbjct: 267 AKQFTLATEVNALAITKLDGTAKGGVVIGISDQFKIPVKYIGIGEKIEDLQVFNREEFVD 326

Query: 309 VIT 311
            + 
Sbjct: 327 SLF 329


>gi|253997293|ref|YP_003049357.1| signal recognition particle protein [Methylotenera mobilis JLW8]
 gi|253983972|gb|ACT48830.1| signal recognition particle protein [Methylotenera mobilis JLW8]
          Length = 454

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L+  I ++    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   LENLTGRLQGVIKNLRGQARLTEENIADAMREVRMALLEADVALPVVKDFIAAVKARAQG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           KDV       Q V+  V++ +  ++   ++  N      P +IL+ G+ G GKTT   KL
Sbjct: 62  KDVLQSLTPGQAVIEVVNDELIALMGKANEGLNLAAV-PPAIILMAGLQGSGKTTTSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K + +   KV+LA+ D +R AAI+QLK  A +   +   S        +A      A+ 
Sbjct: 121 AKLLKEQKKKVLLASADVYRPAAIEQLKTLAQQLEIECFDSNASQAPLDIATATLDYAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I DTAGRL  +  +MA I  +   L       P   L V+DA  GQ+A+   + 
Sbjct: 181 GYYDVVIFDTAGRLGIDEAMMAEIKALHAYLN------PIETLFVVDAMQGQDAINTAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG +RGG  + +      P+ ++GV E ++ LEPF     ++ I 
Sbjct: 235 FGDTLPLTGVILTKLDGDSRGGAALSVRHVTGKPIKYIGVSEKVDGLEPFYPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|153209914|ref|ZP_01947538.1| signal recognition particle protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218940|ref|YP_002305727.1| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii
           CbuK_Q154]
 gi|120575215|gb|EAX31839.1| signal recognition particle protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212013202|gb|ACJ20582.1| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii
           CbuK_Q154]
          Length = 460

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   I  +    RL +        ++   LI +D+ + V +  +E +  K   
Sbjct: 2   LNNLTNRLTTSINKLRGLGRLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       + ++  V + +  +L       N + +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVIGNVRPGEALVKVVQDELTHLLGDELVEINLN-AQPPIVIVMAGLQGSGKTTTVAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +       VM+A+ D +R AAI QL+  A + +A F  ++       +A  A KQA+
Sbjct: 121 ARWLLEIQKKSVMVASADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAE 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVLI+DTAGRLH +++LM  +  +       D   P  +L V+D+  GQ+A    +
Sbjct: 181 KQFMDVLILDTAGRLHIDNVLMEEMKAI------SDAVTPTEILLVVDSMMGQDAANVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + + +  + P+ F+GVGE I+ LEPF     ++ I
Sbjct: 235 SFNDTLPLTGVILTKLDGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|212213064|ref|YP_002304000.1| signal recognition particle, subunit ffh/srp54 [Coxiella burnetii
           CbuG_Q212]
 gi|212011474|gb|ACJ18855.1| signal recognition particle, subunit ffh/srp54 [Coxiella burnetii
           CbuG_Q212]
          Length = 461

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   I  +    RL +        ++   LI +D+ + V +  +E +  K   
Sbjct: 2   LNNLTNRLTTSINKLRGLGRLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       + ++  V + +  +L       N + +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVIGNVRPGEALVKVVQDELTHLLGDELVEINLN-AQPPIVIVMAGLQGSGKTTTVAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +       VM+A+ D +R AAI QL+  A + +A F  ++       +A  A KQA+
Sbjct: 121 ARWLLEIQKKSVMVASADVYRPAAIQQLETLASQINATFFPTQADQKPVEIAKAALKQAE 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVLI+DTAGRLH +++LM  +  +       D   P  +L V+D+  GQ+A    +
Sbjct: 181 KQFMDVLILDTAGRLHIDNVLMEEMKAI------SDAVTPTEILLVVDSMMGQDAANVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + + +  + P+ F+GVGE I+ LEPF     ++ I
Sbjct: 235 SFNDTLPLTGVILTKLDGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|119510257|ref|ZP_01629394.1| signal recognition particle protein [Nodularia spumigena CCY9414]
 gi|119465106|gb|EAW46006.1| signal recognition particle protein [Nodularia spumigena CCY9414]
          Length = 490

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 148/308 (48%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L+    S   KL+    D IS   + D +RE +   L+ +D+ + V +  + E+ T
Sbjct: 1   MFDALSDRLESAWKKLRGQ--DKISQSNIQDALRE-VRRALLEADVNLQVVKDFISEVET 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K    DV       Q+ +  V + + +++   + P   +   +P ++L+ G+ G GKTT 
Sbjct: 58  KAQGADVVAGVRPDQQFIKIVHDELVRVMGAENVPL-AETEEKPTIVLMAGLQGTGKTTA 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+  +       +L A D +R AAIDQL     +           +D   +A +  +
Sbjct: 117 TAKLALHLRKLERSCLLVATDVYRPAAIDQLVTLGKQIDVPVFELGSDADPVEIARQGVE 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+A+  + +IIDTAGRL  +  +M  + ++   ++      PH  L V+D+ TGQ A  
Sbjct: 177 RAKAEGFNTVIIDTAGRLQIDEDMMGELARIKATVQ------PHETLLVVDSMTGQEAAN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               FH   G TG I+TK+DG  RGG  + +      P+ F+GVGE +  L+PF  +  +
Sbjct: 231 LTRTFHDKIGITGAILTKLDGDTRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPERMA 290

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 291 SRILGMGD 298


>gi|78224068|ref|YP_385815.1| signal recognition particle subunit FFH/SRP54 (srp54) [Geobacter
           metallireducens GS-15]
 gi|78195323|gb|ABB33090.1| signal recognition particle subunit FFH/SRP54 (srp54) [Geobacter
           metallireducens GS-15]
          Length = 452

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 142/304 (46%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL      +     + ++ ++E L ++   L+ +D+   V +  VE++  +   
Sbjct: 2   FENLSDKLDLLFKKLRGQGVMTEENIKEALREVRLVLLEADVNFKVVKDFVEKVRERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+V+  V E +  ++           +  P  +++VG+ G GKTT  GKL
Sbjct: 62  TQVLQSLSPGQQVIKIVQEELVALMGGGEDNSLDLAAKPPVALMMVGLQGSGKTTTCGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +     + +L   D +R AAI+QL+    + S +   S    D   +  EA + A  
Sbjct: 122 ARLLKGQRRRPLLVPADVYRPAAIEQLRTLGRQLSVETFDSRADQDPVDICREALRYATL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DTAGRL  +  LM  + ++   ++      P  +L V DA TGQ A+     
Sbjct: 182 NGFDTVILDTAGRLQIDEYLMNELVRIKEAVQ------PREILFVADAMTGQEAVNVATG 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TK+DG A+GG  + I      PV  +G+GE ++ LE F      + I 
Sbjct: 236 FNERLDITGVVLTKLDGDAKGGAALSIRAVTGKPVKLVGLGEKLDALEVFYPDRLVSRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|258514481|ref|YP_003190703.1| signal recognition particle protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778186|gb|ACV62080.1| signal recognition particle protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 449

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L+E    + +   L +  V E L +    L+ +D+   V +  V ++  K   
Sbjct: 3   FSSLAERLQETFKKLRNKGSLKEADVSEALREVRVALLEADVNFKVVKDFVNKVKEKAIG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +D+       Q+V+  V + +  ++       N      P VI++VG++G GKTT   KL
Sbjct: 63  QDILSSLTPAQQVIKIVHQELMDLMGGEYSKINL-APKPPTVIMMVGLHGAGKTTTSAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L AGD  R AAI QL++  ++              A +A  A + A  
Sbjct: 122 ANFLRKQGRRPLLVAGDIHRPAAIKQLQVLGEQLDIPVFTMGDKQAPAVIARAAIENASN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++IIDTAGRLH +  LM  +  +   +K      P+ +L V+DA TGQ+A+   E+
Sbjct: 182 SGRDLVIIDTAGRLHIDEELMDELEAVKSEVK------PNEILLVVDAMTGQDAVNVAEV 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+IMTK+DG  RGG  + +      P+ F G+GE ++ LE F     +  I 
Sbjct: 236 FNRRMQLNGVIMTKLDGDTRGGAALSVKAVTGCPIKFAGIGEKLDALETFHPDRMADRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|326389505|ref|ZP_08211072.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994510|gb|EGD52935.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 318

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 197/312 (63%), Gaps = 5/312 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGV 60
             +   +E   + +K+ +G   T   L   I  I++  R++D+ + EELE++LI +DIG+
Sbjct: 9   KKESETAEKKGFFQKIKEGLLKTRENLTSKIDSIVTIGRKIDEELLEELEEILILADIGI 68

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +   KI+E +  K   + +     + ++ +E ++++L    +PF       P VIL VGV
Sbjct: 69  STTSKIIEGIRQKAKERKIYDASQIKELLAEEVYEILQKDVEPFTL---TSPMVILNVGV 125

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+      G KVMLAAGDTFR+AAIDQL+IWA+R +   +  + GSD A
Sbjct: 126 NGVGKTTTIGKLAYLYKKEGKKVMLAAGDTFRAAAIDQLEIWAERVNCPIIKHQEGSDPA 185

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  + ++A+++D+LI DTAGRLHN   LM  + K+ +V+ R  P A      VLDA
Sbjct: 186 SVIFDGIQASKAREIDILICDTAGRLHNKKNLMEELRKIRKVIDREYPEARVETFLVLDA 245

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL+Q ++F  V+  TG+++TK+DGTA+GG ++ I     +P+ ++G+GEGI DL+
Sbjct: 246 TTGQNALQQAKIFKEVSDITGIVLTKLDGTAKGGIVVAIKSELNVPIRYIGIGEGIEDLQ 305

Query: 300 PFVAKDFSAVIT 311
            F AK F + I 
Sbjct: 306 AFDAKSFVSAIF 317


>gi|157369096|ref|YP_001477085.1| signal recognition particle protein [Serratia proteamaculans 568]
 gi|157320860|gb|ABV39957.1| signal recognition particle protein [Serratia proteamaculans 568]
          Length = 453

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKSELISAMGEVNTELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A+    DF  S++      +   A +QA+
Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAESVGIDFFPSDVKEKPIDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|104783234|ref|YP_609732.1| GTP-binding signal recognition particle protein [Pseudomonas
           entomophila L48]
 gi|95112221|emb|CAK16948.1| 4.5S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Pseudomonas
           entomophila L48]
          Length = 458

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSIKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P V+L+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEELTLNAA-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++  + D +R AAI QL+  A+     F  S+I     A+A  A ++A+
Sbjct: 121 ARHLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH ++ +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDADMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGDALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|325661102|ref|ZP_08149729.1| signal recognition particle protein [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085169|ref|ZP_08334255.1| signal recognition particle protein [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472609|gb|EGC75820.1| signal recognition particle protein [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330407952|gb|EGG87442.1| signal recognition particle protein [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 449

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 148/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++ S  RL +        E++  L+ +D+   V +  V+++  +  
Sbjct: 2   AFDSLTEKLQNVFKNLRSKGRLTEEDVKLALREVKMALLEADVNFKVVKGFVKDVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + +++   +            VI++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEELIRLMGSETTEIQLQPGQATTVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G K +L A D +R AAI QL++  ++   +            +A  A + A 
Sbjct: 122 IAGKLKLKGKKPLLVACDVYRPAAIKQLQVNGEKQGVEVFSMGENHKPVNIAKAAMEHAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRLH +  +M  + ++   ++       H  + V+DA TGQ+A+    
Sbjct: 182 KNGNNVVILDTAGRLHIDEEMMEELQEIKEHVE------VHQTILVVDAMTGQDAVNVAN 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 DFNQKIGIDGVIVTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|251782371|ref|YP_002996673.1| signal recognition particle subunit [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391000|dbj|BAH81459.1| signal recognition particle subunit [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 522

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 148/310 (47%), Gaps = 17/310 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +T  F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  
Sbjct: 1   MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +    ++       Q++L  V+E +  +L   +   +      P +I++VG+ G GKTT 
Sbjct: 61  RAIGHEIIDTLDPTQQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGAGKTTF 119

Query: 128 IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GKL+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  
Sbjct: 120 AGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHLAVDIVRKGL 179

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A 
Sbjct: 180 EQARENRNDYVLIDTAGRLQIDEKLMEELRDVKAL------AQPNEILLVVDSMIGQEAA 233

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F     
Sbjct: 234 NVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHPDRM 293

Query: 307 SAVITGCLDY 316
           S+ I G  D 
Sbjct: 294 SSRILGMGDL 303


>gi|228992573|ref|ZP_04152500.1| Signal recognition particle protein [Bacillus pseudomycoides DSM
           12442]
 gi|228998621|ref|ZP_04158208.1| Signal recognition particle protein [Bacillus mycoides Rock3-17]
 gi|229006121|ref|ZP_04163809.1| Signal recognition particle protein [Bacillus mycoides Rock1-4]
 gi|228755197|gb|EEM04554.1| Signal recognition particle protein [Bacillus mycoides Rock1-4]
 gi|228761089|gb|EEM10048.1| Signal recognition particle protein [Bacillus mycoides Rock3-17]
 gi|228767207|gb|EEM15843.1| Signal recognition particle protein [Bacillus pseudomycoides DSM
           12442]
          Length = 449

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTELMGGEQSKIAV-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ +E F  +  ++ 
Sbjct: 235 QSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|220915825|ref|YP_002491129.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953679|gb|ACL64063.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 469

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 124/304 (40%), Positives = 182/304 (59%), Gaps = 8/304 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + L  G   T       +  + +  ++ DD V  +LE++L  +DIGV  A +++E    K
Sbjct: 166 KTLAAGLEKTRGGFMARLNALFAGGKVVDDSVLADLEEVLFTADIGVKTATRLLESAREK 225

Query: 74  RYAKDVSVQRVLYD-VSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
              K++S    L   + E I ++L        + P     + RP V++VVGVNG GKTT 
Sbjct: 226 VRRKELSDPERLKAALREEIARILDLAGTGGAAAPLAVGEA-RPWVVMVVGVNGSGKTTT 284

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +GKL+ K+  AG KV+L AGDTFR+AA +QL++WA+R SA  V  + G+D AA+ +EA +
Sbjct: 285 VGKLAAKLQGAGHKVLLGAGDTFRAAAGEQLEVWAERVSAPVVRGKEGADPAAVCFEAVQ 344

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +   + VDV++ DTAGRLH    LM  + K+ RV+ +    APH VL VLDAT GQNA+ 
Sbjct: 345 RGAQEGVDVVLCDTAGRLHTKMPLMEELKKVQRVIGKAAAGAPHEVLLVLDATNGQNAIA 404

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   FH   G TG+ +TK+DGTA+GG +I I    +IPV ++GVGE + DL+PF  ++F 
Sbjct: 405 QARQFHEALGVTGIALTKLDGTAKGGVIIGICDELRIPVRYVGVGERVADLKPFSPREFV 464

Query: 308 AVIT 311
             + 
Sbjct: 465 EALF 468


>gi|262369269|ref|ZP_06062597.1| GTP-binding signal recognition particle protein [Acinetobacter
           johnsonii SH046]
 gi|262315337|gb|EEY96376.1| GTP-binding signal recognition particle protein [Acinetobacter
           johnsonii SH046]
          Length = 468

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ-----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V  Q       +  V + + KM+   ++  +   +  P V+L+ G+ G GKTT   KL
Sbjct: 62  QEVMTQLSPGQAFVKIVHDELTKMMGEANESLDL-AAKPPVVVLLAGLQGAGKTTTAAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KV + + D +R AAI QL+  A    A F  S        +A  A +QA+
Sbjct: 121 ARFLQERQKKKVAMVSADVYRPAAIKQLQTVAGEVGAIFFESSADEKPITIATRAIEQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 IQFADVLIVDTAGRLHVDDEMMDEIKELHAAIK------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF  +  +  I
Sbjct: 235 AFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPERVAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|319947050|ref|ZP_08021284.1| signal recognition particle protein [Streptococcus australis ATCC
           700641]
 gi|319747098|gb|EFV99357.1| signal recognition particle protein [Streptococcus australis ATCC
           700641]
          Length = 523

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISEADVQEATKEIRLALLEADVALPVVKDFIKRVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIETLNPAQQIVKIVDEELTAILGSETADI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFSLGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  + +      P+ +L V+DA  GQ A    
Sbjct: 181 RANHNDYVLIDTAGRLQIDEKLMGELRDVKALAE------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S  
Sbjct: 235 REFNEQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSGR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|302879899|ref|YP_003848463.1| signal recognition particle protein [Gallionella capsiferriformans
           ES-2]
 gi|302582688|gb|ADL56699.1| signal recognition particle protein [Gallionella capsiferriformans
           ES-2]
          Length = 450

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   I ++    RL +        E+   L+ +D+ + V ++   ++      
Sbjct: 2   LDNLTQRLSGVIKNLRGQARLTESNIQDALREVRMALLEADVALPVVKEFAAQVKEAALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q  +  V   + +++   +   N   +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  HEVIGNLNPGQAFIGVVHRELTRLMGEHNDALNL-TTTPPAVILMAGLQGAGKTTTCGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + D    K++L + D +R AAI+QL+  A +   DF  S+I      +A  A   A+
Sbjct: 121 AKLLHDQHKKKILLVSCDIYRPAAIEQLRTLATQLGIDFFASDISQKPQDIALAALDFAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRL  +  +MA I ++   LK      P   L V+DA TGQ+A+    
Sbjct: 181 KHHHDVLIVDTAGRLAIDEAMMAEIQQLHATLK------PIETLFVVDAMTGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TKMDG +RGG  + +      P+ F+GV E  N LE F  +  ++ I
Sbjct: 235 AFGEALPLTGIVLTKMDGDSRGGAALSVRHVTGRPIKFIGVSEKPNGLEAFHPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|300361928|ref|ZP_07058105.1| signal recognition particle protein [Lactobacillus gasseri JV-V03]
 gi|300354547|gb|EFJ70418.1| signal recognition particle protein [Lactobacillus gasseri JV-V03]
          Length = 476

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 151/307 (49%), Gaps = 18/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L++ + ++    ++ +        E+   L+ +D+   V +  ++++  +  
Sbjct: 2   AFENLSERLQKALKNLTGKGKISEADINDASREIRLALLEADVNFKVVKDFIKKIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V + + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVDDELTKMMGEEAVSLNKS-QHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAIDQLK    + +     SE   D A +     ++A
Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIDQLKQIGQQLNVPVY-SEDNQDVAEIVNHGLEEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM     + RV     P    + L V+DA TGQ A +  
Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMNE---LKRVTAVAHP---DNTLLVVDAMTGQAATQVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+I+TK+DG  RGG  + I     +P+ F G GE + DL  F     ++ 
Sbjct: 234 EGFNNDLDLTGIILTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 294 ILGMGDM 300


>gi|29653794|ref|NP_819486.1| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii
           RSA 493]
 gi|29541057|gb|AAO90000.1| signal recognition particle, subunit FFH/SRP54 [Coxiella burnetii
           RSA 493]
          Length = 461

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   I  +    RL +        ++   LI +D+ + V +  +E +  K   
Sbjct: 2   LNNLTNRLTTSINKLRGLGRLTEENIQSTLHDIRSALIEADVALPVVKDFIEHVREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       + ++  V + +  +L       N + +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVIGNVRPGEALVKVVQDELTHLLGDELVEINLN-AQPPIVIVMAGLQGSGKTTTVAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +       VM+A+ D +R AAI QL+  A + +A F  ++       +A  A KQA+
Sbjct: 121 ARWLLEIQKKSVMVASADVYRPAAIQQLETLASQINAIFFPTQADQKPVEIAKAALKQAE 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVLI+DTAGRLH +++LM  +  +       D   P  +L V+D+  GQ+A    +
Sbjct: 181 KQFMDVLILDTAGRLHIDNVLMEEMKAI------SDAVTPTEILLVVDSMMGQDAANVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + + +  + P+ F+GVGE I+ LEPF     ++ I
Sbjct: 235 SFNDTLPLTGVILTKLDGDTRGGAALSMRMITQKPIKFVGVGEKIDALEPFHPNRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|108864006|gb|ABG22369.1| Signal recognition particle 54 kDa protein, chloroplast precursor,
           putative, expressed [Oryza sativa Japonica Group]
          Length = 482

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 155/308 (50%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              +LT G  S   KL+   TD ++   + + +R+ +   L+ +D+ + V +  +E +  
Sbjct: 1   MFGQLTTGLESAWNKLRG--TDQLTKDNIAEPMRD-IRRALLEADVSLPVVRSFIESVTE 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K    DV       Q+++  V++ + +++        +     P VIL+ G+ GVGKTTV
Sbjct: 58  KAVGTDVIRGVKPEQQLVKVVNDELVQLMGGEVSDLVF-AKTAPTVILLAGLQGVGKTTV 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+  +   G   ML A D +R AAIDQL I   +           +  + +A    K
Sbjct: 117 CAKLAYYLKKMGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKNGIK 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A++KK DV+I+DTAGRL  +  +M+ + ++ R +       P  VL V+DA TGQ A  
Sbjct: 177 EAKSKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVN------PTEVLLVVDAMTGQEAAS 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            V  F+   G TG I+TK+DG +RGG  + I      P+ F+G GE + DLEPF     +
Sbjct: 231 LVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPDRMA 290

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 291 QRILGMGD 298


>gi|282899599|ref|ZP_06307563.1| Signal recognition particle protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195478|gb|EFA70411.1| Signal recognition particle protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 480

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++          E+   L+ +D+ + V +  + ++ TK   
Sbjct: 2   FDALSDRLEAAWKKLRGQDKISQSNIQDALREVRRALLEADVNLQVVKDFIADVETKAQG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + +++   + P   +  ++  V+L+ G+ G GKTT   KL
Sbjct: 62  AEVISGVRPDQQFIKIVYDELVQVMGEENVPL-AEAQNQTTVVLMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       +L A D +R AAIDQL     +           +D   +A +  ++A+ 
Sbjct: 121 ALHLRKTNRSCLLVATDIYRPAAIDQLVTLGKQIDVPVFEMGSDADPVEIARQGVERARN 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + ++ +I+DTAGRL  +  +MA + ++   ++      P   L V+DA TGQ A      
Sbjct: 181 EGINTVIVDTAGRLQIDQDMMAELSRIKSTIE------PDETLLVVDAMTGQEAANLTRT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TKMDG +RGG  + +      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FHEQIGITGAILTKMDGDSRGGAALSVRQISGAPIKFIGVGEKVEALQPFYPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|239631965|ref|ZP_04674996.1| signal recognition particle-docking protein FtsY [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301066651|ref|YP_003788674.1| signal recognition particle GTPase [Lactobacillus casei str. Zhang]
 gi|239526430|gb|EEQ65431.1| signal recognition particle-docking protein FtsY [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300439058|gb|ADK18824.1| Signal recognition particle GTPase [Lactobacillus casei str. Zhang]
          Length = 331

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 170/302 (56%), Gaps = 5/302 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +G   +     E +  + ++ R +D+   + LE++LI SD+G   A K+ ++L  +
Sbjct: 22  NKYDEGLEKSRSSFGEKLNALFANFRSVDEDFFDNLEEMLIESDVGFETAVKLSDDLREE 81

Query: 74  RYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIG 129
              K+    + +   + E +  M     K  +         P V L VGVNG GKTT +G
Sbjct: 82  VKLKNAKDPKAVSRVIVEKLVDMYGDAGKDEDNALHFAESGPSVFLFVGVNGAGKTTTVG 141

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ ++ + G +V+L A DTFR+ AI QL+ W  R     V ++ G D AA+ ++  K+A
Sbjct: 142 KLAHQLREEGKRVLLVAADTFRAGAIQQLQEWGRRVDVPVVATKEGGDPAAVVFDGVKRA 201

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + ++ DV+++DTAGRL N   LM  + K+ RV+ R  P AP  VL VLDATTGQNAL Q 
Sbjct: 202 KDEQFDVVLVDTAGRLQNKVNLMNELNKIKRVIVRELPDAPQEVLLVLDATTGQNALNQA 261

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG+ +GG ++ I     +PV  +G+GE ++DL+ F    F A 
Sbjct: 262 KEFNQTTKITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLGEKMDDLQAFDPTKFVAG 321

Query: 310 IT 311
           + 
Sbjct: 322 LF 323


>gi|186680629|ref|YP_001863825.1| signal recognition particle-docking protein FtsY [Nostoc
           punctiforme PCC 73102]
 gi|186463081|gb|ACC78882.1| signal recognition particle-docking protein FtsY [Nostoc
           punctiforme PCC 73102]
          Length = 547

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 107/315 (33%), Positives = 182/315 (57%), Gaps = 5/315 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + + V+ E ++W++KL +G   T   +   +  I+    L+     E+E LL+++D+GV 
Sbjct: 231 NPEDVSIEEITWLKKLRQGLDKTRRSILNQLKAIVGQGPLNQAAVTEIEALLLQADVGVE 290

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVILVV 117
               I+  L TK   +  + +  +  + +++  ML   S    K          ++ L+ 
Sbjct: 291 ATDFIINALQTKLREEVTAPEEAIAYLKKILRDMLDAPSIASHKTSFTPEKETLNIWLIT 350

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT IGK++     +G K ++ A DTFR+AA++Q+K+W  R+  + + +    +
Sbjct: 351 GVNGAGKTTTIGKIAHLGQKSGYKCLIGAADTFRAAAVEQVKVWGSRSGVEVIANPGKNT 410

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A   AQ+++ ++L++DTAGRL N   LM  +GK+ R++ +  P+A    L V
Sbjct: 411 DPAAVVFDAIAAAQSRQTELLLVDTAGRLQNKKNLMDELGKIRRIIDKKAPNAKVESLLV 470

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G GEGI 
Sbjct: 471 LDATLGQNGLRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIE 530

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF + +F   + 
Sbjct: 531 DLRPFSSYEFVEALL 545


>gi|319786598|ref|YP_004146073.1| signal recognition particle protein [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465110|gb|ADV26842.1| signal recognition particle protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 456

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 151/309 (48%), Gaps = 16/309 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT+  + T  +L+      ++   + + VRE +   L+ +D+ + V Q +++ +  
Sbjct: 1   MFESLTQRLSGTLERLRG--RGRLTESNISEAVRE-VRIALLEADVALPVVQALIQRIKV 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +   ++V       Q ++  V + +  ++   +   N +    P V L+ G+ G GKTT 
Sbjct: 58  RAVGQEVLKSLTPGQALIKVVRDELTAVMGSSATDLNLNVPA-PAVFLMAGLQGAGKTTT 116

Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           +GKL++ + +    KVM+ + D +R AAI+QLK  A++T   F  S+ G     +   A 
Sbjct: 117 VGKLARHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQTGVLFFPSDAGQKPEDIVRAAI 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+   VDVLI+DTAGRL  +  +MA I  +   +           L V+DA TGQ+A 
Sbjct: 177 ADARKSFVDVLIVDTAGRLAIDEAMMAEIKALHAAVNPA------ETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F      TG+++TK DG ARGG  + +      P+ F+G GE ++ L+ F     
Sbjct: 231 NTAKAFSEALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGTGEKVDGLDVFHPDRV 290

Query: 307 SAVITGCLD 315
           +A I    D
Sbjct: 291 AARILDMGD 299


>gi|331698510|ref|YP_004334749.1| signal recognition particle protein [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953199|gb|AEA26896.1| signal recognition particle protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 509

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 143/308 (46%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +    RL +   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDTLSDRLGTALAGLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIARIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++         P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVVKIVNEELIAVLGGETRRIAL-AKEPPSVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++ +   G   +L A D  R  A++QL+I  +R        E G+   D   +A      
Sbjct: 121 ARWLKGQGHTPLLVACDLQRPNAVNQLQIVGERAGVTTFAPEPGNGVGDPVDVARRGVAH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  D++I+DTAGRL  ++ LM     +       D   P   L V+DA  GQ+A+  
Sbjct: 181 ARDKMYDIVIVDTAGRLGVDAELMQQASDI------RDAVRPDETLFVVDAMIGQDAVAT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G +G+++TK+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGFSGVVLTKLDGDARGGAALSVREVTGQPILFASNGEKLEDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I G  D 
Sbjct: 295 RILGMGDL 302


>gi|262164016|ref|ZP_06031755.1| signal recognition particle subunit Ffh SRP54 [Vibrio mimicus
           VM223]
 gi|262027544|gb|EEY46210.1| signal recognition particle subunit Ffh SRP54 [Vibrio mimicus
           VM223]
          Length = 453

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 93/298 (31%), Positives = 145/298 (48%), Gaps = 17/298 (5%)

Query: 28  LKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-- 81
           + + + +I    RL +        E+   L+ +D+ + V +  V  +       +VS   
Sbjct: 1   MSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAVGVEVSKSL 60

Query: 82  ---QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
              Q  +  V + +  ++   ++  N   +  P VIL+ G+ G GKTT +GKLSK + + 
Sbjct: 61  TPGQEFIKIVRQQLEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKLSKLLKER 119

Query: 139 -GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++ + D +R AAI QL+  A+    DF  S        +A  A   A+ K  DVL
Sbjct: 120 DKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAKKKFYDVL 179

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           I+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A    + F     
Sbjct: 180 IVDTAGRLAIDEQMMAEIQALHKAIT------PVETLFVVDAMTGQDAANTAKAFGDALP 233

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 234 LTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGD 291


>gi|288802188|ref|ZP_06407628.1| signal recognition particle-docking protein FtsY [Prevotella
           melaninogenica D18]
 gi|302346578|ref|YP_003814876.1| signal recognition particle-docking protein FtsY [Prevotella
           melaninogenica ATCC 25845]
 gi|288335155|gb|EFC73590.1| signal recognition particle-docking protein FtsY [Prevotella
           melaninogenica D18]
 gi|302150799|gb|ADK97060.1| signal recognition particle-docking protein FtsY [Prevotella
           melaninogenica ATCC 25845]
          Length = 316

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 123/301 (40%), Positives = 179/301 (59%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T   +   +T  ++ + ++DD V ++LE++L+ SD+GV    KI+  +  +  
Sbjct: 15  LDKGLEKTKENVFSKLTRAVAGKSKVDDEVLDDLEEILVTSDVGVDTTIKIIRRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   +   I  +L   +      +       P+VILVVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTSELNSILKSEITALLTENNTGDNGEWTLPEGTHPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV L A DTFR+AA++Q++IW DR     V  ++G+D A++A++  + A+
Sbjct: 135 LAWQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVVKQQMGADPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +TGQNA  Q  
Sbjct: 195 ANGADVVIIDTAGRLHNKVGLMNELKKIKDVMKKVVPEAPHEVLLVLDGSTGQNAFEQAR 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F    F   +
Sbjct: 255 QFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFDKVQFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|325126035|gb|ADY85365.1| Signal recognition protein Ffh [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 467

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L++ + ++    ++ +        E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFENLSERLQKALRNLTGKGKISEEDINAASREIRLALLEADVNFKVVKDFIKTIKKRAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E + KM+   +        H P VI++VG+ G GKTT +GK
Sbjct: 62  GQEVQESLTPGQQVIKIVNEELTKMMGEEAVGLTKS-PHIPTVIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++  +   +  L AGD +R AAIDQLK                   A +  +   +A
Sbjct: 121 LAYRLMKEEKARPFLIAGDIYRPAAIDQLKQIGADLKVPVYSDPEEKSVAKIVEDGLAEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              + D +IIDTAGRL  +  LM  + ++  V        P ++L V+DA TGQ A    
Sbjct: 181 AVHRNDYVIIDTAGRLEIDEPLMKELEEVKAV------SQPDNILLVVDAMTGQVAADVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG  RGG  + I      P+ F G GE + DLE F     ++ 
Sbjct: 235 KTFNERLDVTGVILTKLDGDTRGGAALSIRAITGKPILFTGQGEKLTDLEVFHPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|260592451|ref|ZP_05857909.1| signal recognition particle-docking protein FtsY [Prevotella
           veroralis F0319]
 gi|260535497|gb|EEX18114.1| signal recognition particle-docking protein FtsY [Prevotella
           veroralis F0319]
          Length = 316

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 122/301 (40%), Positives = 179/301 (59%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T   +   +T  ++ + ++DD V + LE++L+ SD+GV    KI+  +  +  
Sbjct: 15  LDKGLEKTKQNVFTKLTRAVAGKSKVDDEVLDNLEEILVSSDVGVDTTIKIIHRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   +   I ++L   +      +       P+VILVVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTSELNEILKGEITELLTENNNGDSVEWTLPEESHPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV L A DTFR+AA++Q++IW DR     +  ++G+D A++A++  + A+
Sbjct: 135 LAYQFKQAGKKVYLGAADTFRAAAVEQIQIWGDRVGVPVIKQQMGADPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRLHN   LM  + K+  V+K++ P APH VL VLD +TGQNA  Q  
Sbjct: 195 ANGADVVIIDTAGRLHNKVGLMNELKKIKDVMKKVVPEAPHEVLLVLDGSTGQNAFEQAR 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F    F   +
Sbjct: 255 QFAAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQIFDKAQFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|254852709|ref|ZP_05242057.1| signal recognition particle protein [Listeria monocytogenes FSL
           R2-503]
 gi|258606030|gb|EEW18638.1| signal recognition particle protein [Listeria monocytogenes FSL
           R2-503]
          Length = 467

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GADVMKSLTPGQQVIKIVQEELTSLMGGEESKIGT-ADRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  +        P  +L V+D+ TGQ+A+   
Sbjct: 181 KEEHLDYVIIDTAGRLHIDETLMDELKQVKEIAT------PTEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+  GE +  LE F     ++ 
Sbjct: 235 QSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|255533405|ref|YP_003093777.1| signal recognition particle-docking protein FtsY [Pedobacter
           heparinus DSM 2366]
 gi|255346389|gb|ACU05715.1| signal recognition particle-docking protein FtsY [Pedobacter
           heparinus DSM 2366]
          Length = 320

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 126/300 (42%), Positives = 182/300 (60%), Gaps = 5/300 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T       IT  ++ +  +DD V + LE++L+ SD+GV+   KI+E +  +  
Sbjct: 20  LDKGLEKTKEGFFSKITKAVAGKSSIDDDVLDNLEEVLVTSDVGVSTTLKIIERIEQRVA 79

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKL 131
             K +S   + + + + I  +L   +      F    H+P+VI+VVGVNGVGKTT IGKL
Sbjct: 80  KDKYLSTTELNHLLRDEIQLLLAENNSNDFRQFEYGQHKPYVIMVVGVNGVGKTTTIGKL 139

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+    LKV+L A DTFR+AA++Q+K+W +R     V   +GSD A++AY+  + A A
Sbjct: 140 AHKLKAENLKVVLGAADTFRAAAVEQIKLWGERVGVRVVAQAMGSDPASVAYDTLQSAVA 199

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRLHN   LM  +GK+  V++++ P APH +L VLD +TGQNA  Q + 
Sbjct: 200 NGEDVVIIDTAGRLHNKVGLMNELGKIKNVMQKVIPSAPHEILLVLDGSTGQNAFEQCKQ 259

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        L +TK+DGTA+GG +I I    KIPV ++GVGEG+NDL+ F  K F   + 
Sbjct: 260 FTEATDVNALAITKLDGTAKGGVVIGISDQFKIPVKYIGVGEGMNDLQLFDKKAFVDSLF 319


>gi|226365994|ref|YP_002783777.1| signal recognition particle protein [Rhodococcus opacus B4]
 gi|226244484|dbj|BAH54832.1| signal recognition particle protein [Rhodococcus opacus B4]
          Length = 535

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/318 (28%), Positives = 149/318 (46%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL     D    E+   L+ +D+ + V +  + ++  +   
Sbjct: 9   FESLSDRLTGALKDLRGKGRLSGADIDATCREIRLALLEADVALPVVRSFIAKIKERAKG 68

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 69  VEVSAALNPAQQVVKIVNEELVGILGGETRRLAF-AKTPPTVIMLAGLQGSGKTTLAGKL 127

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177
           +K + D G   +L A D  R  A+ QL+I  +R  A       G+              D
Sbjct: 128 AKWLRDQGHTPLLVACDLQRPGAVTQLQIVGERAGATVFAPHPGTSIGGGDNELGITAAD 187

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A+ K+ DV+I+DTAGRL  ++ LMA    +       D   P   + VL
Sbjct: 188 PVEVARAGVEEARNKQFDVVIVDTAGRLGIDADLMAQAAGI------RDAVNPDETIFVL 241

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F    G TG+++TK+DG ARGG  + +      P+ F   GE + D
Sbjct: 242 DAMIGQDAVSTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFASTGEKLED 301

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     ++ I G  D
Sbjct: 302 FDVFHPDRMASRILGMGD 319


>gi|119899521|ref|YP_934734.1| signal recognition particle protein [Azoarcus sp. BH72]
 gi|119671934|emb|CAL95848.1| signal recognition particle protein [Azoarcus sp. BH72]
          Length = 452

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L + +  +    RL +        E+   L+ +D+ + V +  + ++  K   
Sbjct: 2   LDNLTQRLSKVVKTLRGQARLTEDNIQDAMREVRMALLEADVALPVVKDFIAKVKLKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++    +  N   +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QEVVGSLTPGQALVGVVHDELKALMGGAHEGLNL-ATQPPAVILMAGLQGAGKTTTTGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI+QLK  A +   +F  S++      +A  A   A+
Sbjct: 121 AKHLKESQKKKVLVVSTDVYRPAAIEQLKAVAAQAGVEFFPSQVDQRPVDIALGAVDFAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  +  +MA I  +   +K      P   L V+DA  GQ+A+    
Sbjct: 181 KHHVDVLLVDTAGRLAIDEAMMAEIQALHAAVK------PIETLFVVDAMLGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + +      P+ F GVGE ++ LEPF     ++ I
Sbjct: 235 AFNDALPLTGVVLTKLDGDARGGAALSVRHVTGKPLKFAGVGEKLSGLEPFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|322411711|gb|EFY02619.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 520

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q++L  V+E +  +L   +   +      P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENRNDYVLIDTAGRLQIDEKLMEELRDVKAL------AQPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + +      P+ + G GE I D+E F     S+ 
Sbjct: 235 YEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKYTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|256545499|ref|ZP_05472861.1| signal recognition particle protein [Anaerococcus vaginalis ATCC
           51170]
 gi|256398895|gb|EEU12510.1| signal recognition particle protein [Anaerococcus vaginalis ATCC
           51170]
          Length = 445

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 154/304 (50%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F++ S KL+E +  +    +L     D V  E++  L+ +D+   V ++ V+++  +   
Sbjct: 3   FSNLSEKLQESLGKLTGKGKLSEKDIDNVAREIKLSLLEADVNYKVVKEFVKKIKERAMG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E +  ++   +       S  PHV+L+VG+ G GKTT  GKL
Sbjct: 63  QDVMESLTPGQTVIKIVNEELTNLMGKENSKLELKGS-TPHVVLMVGLQGSGKTTHSGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            +K+   G   +L A D +R AAI+QLK+   +   +        D    A EA + A+ 
Sbjct: 122 VRKLKKEGRNPLLVALDVYRPAAIEQLKVVGKQAEVEVFEKG-KQDPVQTANEAKEYARR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  +  LM  +  + + +K      P  +L V+DA  GQ ++   + 
Sbjct: 181 NNNDVVIMDTAGRLQIDEDLMDELKNIKKAVK------PDEILLVVDAMVGQESVNVAKT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG ARGG  + I      P+ F+G GE ++DLE F     ++ I 
Sbjct: 235 FDEYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGTGEKLDDLEAFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|242059977|ref|XP_002459134.1| hypothetical protein SORBIDRAFT_03g046390 [Sorghum bicolor]
 gi|241931109|gb|EES04254.1| hypothetical protein SORBIDRAFT_03g046390 [Sorghum bicolor]
          Length = 366

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 186/311 (59%), Gaps = 6/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL--DDGVREELEDLLIRSDIGVAVA 63
           +  ++ S + KL  GF+ T   L   + ++++   L   D V ++LE+ L+ SD G  ++
Sbjct: 56  IKEKAKSDVEKLFSGFSKTRENLS-VVDELLTYWNLADTDRVLDDLEEALLVSDFGPKIS 114

Query: 64  QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
            +IV+ L  + R  K  S   +   +   I ++L         +    +P VI++VGVNG
Sbjct: 115 FRIVDTLREEIRDGKLKSGAEIKAALKRCILELLTSKGGNSELNLGFRKPAVIMIVGVNG 174

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAA 180
            GKTT +GKL+ +  + G+KV++AAGDTFR+AA DQL++WA+RT ++ V   +  +   A
Sbjct: 175 GGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAQPPA 234

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A K+ + +  DV++ DT+GRLH N  LM  +    +VL +  P AP+ +L VLD T
Sbjct: 235 VLSQAVKRGKREGFDVVLCDTSGRLHTNYGLMEELVSCKKVLVKALPGAPNEILLVLDGT 294

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L+Q   F+ V G TG I+TK+DGTARGG ++ +V    IPV F+GVGEG+ DL+P
Sbjct: 295 TGLNMLQQAREFNDVVGVTGFILTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQP 354

Query: 301 FVAKDFSAVIT 311
           F A+ F   I 
Sbjct: 355 FDAEAFVEAIF 365


>gi|91794106|ref|YP_563757.1| signal recognition particle protein [Shewanella denitrificans
           OS217]
 gi|91716108|gb|ABE56034.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           denitrificans OS217]
          Length = 457

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL DD ++E L +    L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTDDNIKETLREVRMALLEADVALPVVREFVNSVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + K +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELEKAMGESNEALDL-AAIPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +     K + + + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLAAEVEVEFFPSDVSQKPLDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDEAMMDEIKQLHASIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRNITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|217969599|ref|YP_002354833.1| signal recognition particle protein [Thauera sp. MZ1T]
 gi|217506926|gb|ACK53937.1| signal recognition particle protein [Thauera sp. MZ1T]
          Length = 456

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L + +  +    RL +        E+   L+ +D+ + V +  V ++  K   
Sbjct: 2   LDNLTQRLSKVVKTLRGQARLTEENIQEAMREVRMALLEADVALPVVKDFVAKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++    +  +   +  P V+L+ G+ G GKTT  GKL
Sbjct: 62  QEVIGSLTPGQALVGVVHDELKALMGGAHEGLDLS-TQPPAVVLMAGLQGAGKTTTTGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI+QLK  A +    F  SE       +A  A   A+
Sbjct: 121 AKLLHEQHKKKVLVVSTDVYRPAAIEQLKTVAAQAGVGFFPSETAQKPVDIALAALDYAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              +DVL++DTAGRL  +  +MA I  +   +K      P   L V+DA  GQ+A+    
Sbjct: 181 KHHMDVLLVDTAGRLAVDEAMMAEIQVLHAAVK------PIETLFVVDAMLGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG +RGG  + +      P+ F GVGE ++ LEPF     ++ I
Sbjct: 235 AFNEALPLTGIVLTKLDGDSRGGAALSVRHVTGKPLKFAGVGEKLSGLEPFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|114567018|ref|YP_754172.1| signal recognition particle protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337953|gb|ABI68801.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 448

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRL-DDGVR---EELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L++    +    ++ ++ ++    E+   L+ +D+   V +  VE +  +  
Sbjct: 2   AFEGLSDRLQDIFKKLRGKGKIGEEDIKTAMREVRLALLEADVNFKVVKDFVERVRQRAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+++  V + +  ++           +  P + ++VG+ G GKTT + K
Sbjct: 62  GQEVLQSLTPGQQIIKVVHDEMTALMGGSESKLTL-AAKPPSIYMLVGLQGAGKTTTVAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L + +   G + +L AGD +R AAI QL++  ++           S+   +A  + + A+
Sbjct: 121 LGRNLLRQGRRPVLVAGDIYRPAAIKQLQVLGEQVGIPVFSMG-QSNPVDIARASLEYAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  D++I+DTAGRLH N  LM  + ++   +       PH +L V+DA TGQ+A+   E
Sbjct: 180 SQNRDIVILDTAGRLHINEELMDELKQIKSAIN------PHEILLVVDAMTGQDAVNVAE 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+I+TK+DG  RGG  + +      P+ ++G+GE ++ LE F     ++ I
Sbjct: 234 SFNRDLGLTGVILTKLDGDTRGGAALSVKAVTGCPIKYVGMGEKLDALETFFPDRMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|186683137|ref|YP_001866333.1| signal recognition particle protein [Nostoc punctiforme PCC 73102]
 gi|186465589|gb|ACC81390.1| signal recognition particle protein [Nostoc punctiforme PCC 73102]
          Length = 488

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++          E+   L+ +D+ + V +  + E+  K   
Sbjct: 2   FDALSDRLEAAWKKLRGQDKISQSNIQDALREVRRALLEADVNLQVVKDFISEVEAKAQG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + +++   + P   +   +P ++L+ G+ G GKTT   KL
Sbjct: 62  AEVVTGVRPDQQFIKIVHDELVEVMGEENVPI-AEAQEKPTIVLMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       +L A D +R AAIDQL     +           +D   +A +  ++A+A
Sbjct: 121 ALHLRKLDRSCLLVATDVYRPAAIDQLLTLGKQIDVPVFELGSDADPVEIARQGVERARA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + V+ +IIDTAGRL  +  +MA + ++   ++      PH  L V+DA TGQ A      
Sbjct: 181 EGVNTVIIDTAGRLQIDEDMMAELARIKATVQ------PHETLLVVDAMTGQEAANLTRT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TKMDG +RGG  + +      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FHEQIGITGAILTKMDGDSRGGAALSVRKISGAPIKFVGVGEKVEALQPFYPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|297810481|ref|XP_002873124.1| hypothetical protein ARALYDRAFT_487173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318961|gb|EFH49383.1| hypothetical protein ARALYDRAFT_487173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 562

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 95/311 (30%), Positives = 153/311 (49%), Gaps = 15/311 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  +   KLK    ++++   + + +R+ +   L+ +D+ + V ++ V+ 
Sbjct: 72  RAEMFGQLTGGLEAAWSKLKG--EEVLTKENIAEPMRD-IRRALLEADVSLPVVRRFVQS 128

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +     V       Q+++  V + + K++        +  S  P VIL+ G+ GVGK
Sbjct: 129 VSDQAVGMGVIRGVKPDQQLVKIVHDELVKLMGGEVSELQFAKSG-PTVILLAGLQGVGK 187

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TTV  KL+  +   G   ML AGD +R AAIDQL I  ++       +      A +A +
Sbjct: 188 TTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQ 247

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             K+A+   VDV+I+DTAGRL  +  +M  +  + + L       P  VL V+DA TGQ 
Sbjct: 248 GLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLN------PTEVLLVVDAMTGQE 301

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF   
Sbjct: 302 AAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPD 361

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 362 RMAGRILGMGD 372


>gi|229086398|ref|ZP_04218574.1| Signal recognition particle protein [Bacillus cereus Rock3-44]
 gi|228696914|gb|EEL49723.1| Signal recognition particle protein [Bacillus cereus Rock3-44]
          Length = 449

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTELMGGEQSKIAV-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ +E F  +  ++ 
Sbjct: 235 QSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|134102494|ref|YP_001108155.1| signal recognition particle GTPase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291004115|ref|ZP_06562088.1| signal recognition particle protein [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915117|emb|CAM05230.1| signal recognition particle GTPase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 518

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + ++    RL D   +    E+   L+ +D+ + V +  +  +  +  +
Sbjct: 2   FDTLSDRLTSVLKNLRGKGRLSDADIDATAREIRIALLEADVALPVVRSFIAGVKERAKS 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVIKIVNEELVGILGGETRRLEY-AKTPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++ +   G   ML A D  R  A++QL++  +R        E G+   D   ++  +  +
Sbjct: 121 ARWLQGQGHTPMLVAADLQRPNAVNQLQVVGERAGVAVFAPEPGNGVGDPVDVSRRSIDE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+  + D++I+DTAGRL  +  +M     +   +K      P   L V+DA  GQ+A+  
Sbjct: 181 ARRAQHDIVIVDTAGRLGIDQEMMQQAADIRDAVK------PDETLFVVDAMIGQDAVST 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G +G+++TK+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGFSGVVLTKLDGDARGGAALSVRQVTGQPIMFASNGEKLEDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I G  D 
Sbjct: 295 RILGMGDM 302


>gi|30021933|ref|NP_833564.1| signal recognition particle protein [Bacillus cereus ATCC 14579]
 gi|218235010|ref|YP_002368646.1| signal recognition particle protein [Bacillus cereus B4264]
 gi|218898998|ref|YP_002447409.1| signal recognition particle protein [Bacillus cereus G9842]
 gi|228902348|ref|ZP_04066505.1| Signal recognition particle protein [Bacillus thuringiensis IBL
           4222]
 gi|228909670|ref|ZP_04073493.1| Signal recognition particle protein [Bacillus thuringiensis IBL
           200]
 gi|228922599|ref|ZP_04085899.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228940933|ref|ZP_04103492.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228954121|ref|ZP_04116150.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228960061|ref|ZP_04121725.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228973862|ref|ZP_04134438.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980452|ref|ZP_04140762.1| Signal recognition particle protein [Bacillus thuringiensis Bt407]
 gi|229071343|ref|ZP_04204566.1| Signal recognition particle protein [Bacillus cereus F65185]
 gi|229111316|ref|ZP_04240869.1| Signal recognition particle protein [Bacillus cereus Rock1-15]
 gi|229129121|ref|ZP_04258094.1| Signal recognition particle protein [Bacillus cereus BDRD-Cer4]
 gi|229152044|ref|ZP_04280239.1| Signal recognition particle protein [Bacillus cereus m1550]
 gi|229162781|ref|ZP_04290738.1| Signal recognition particle protein [Bacillus cereus R309803]
 gi|229180121|ref|ZP_04307465.1| Signal recognition particle protein [Bacillus cereus 172560W]
 gi|29897489|gb|AAP10765.1| Signal recognition particle, subunit Ffh/SRP54 [Bacillus cereus
           ATCC 14579]
 gi|218162967|gb|ACK62959.1| signal recognition particle protein [Bacillus cereus B4264]
 gi|218540894|gb|ACK93288.1| signal recognition particle protein [Bacillus cereus G9842]
 gi|228603330|gb|EEK60807.1| Signal recognition particle protein [Bacillus cereus 172560W]
 gi|228620663|gb|EEK77532.1| Signal recognition particle protein [Bacillus cereus R309803]
 gi|228631393|gb|EEK88027.1| Signal recognition particle protein [Bacillus cereus m1550]
 gi|228654358|gb|EEL10223.1| Signal recognition particle protein [Bacillus cereus BDRD-Cer4]
 gi|228672092|gb|EEL27383.1| Signal recognition particle protein [Bacillus cereus Rock1-15]
 gi|228711797|gb|EEL63749.1| Signal recognition particle protein [Bacillus cereus F65185]
 gi|228779272|gb|EEM27529.1| Signal recognition particle protein [Bacillus thuringiensis Bt407]
 gi|228785887|gb|EEM33890.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228799577|gb|EEM46530.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805687|gb|EEM52277.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228818769|gb|EEM64835.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228837028|gb|EEM82369.1| Signal recognition particle protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228849959|gb|EEM94790.1| Signal recognition particle protein [Bacillus thuringiensis IBL
           200]
 gi|228857317|gb|EEN01820.1| Signal recognition particle protein [Bacillus thuringiensis IBL
           4222]
 gi|326941614|gb|AEA17510.1| signal recognition particle protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 449

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTELMGGEQSKIAV-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ +E F  +  ++ 
Sbjct: 235 QSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|317129236|ref|YP_004095518.1| signal recognition particle-docking protein FtsY [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474184|gb|ADU30787.1| signal recognition particle-docking protein FtsY [Bacillus
           cellulosilyticus DSM 2522]
          Length = 332

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 189/312 (60%), Gaps = 3/312 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+  ++ S   K   G   T       + D++ + R++D+   EELED+LI +D+GV 
Sbjct: 8   KEKITGQTESVTEKFKDGLTKTRDSFVGKMNDLVKNYRKVDEEFFEELEDILISADVGVH 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF-SHRPHVILVVGV 119
               +++EL  +  ++ +S    +  + SE + ++L    +    +   +   VIL VGV
Sbjct: 68  TVMDLIDELKDEAKSRKISDAVDIQPLISEKLAELLQKSEEETKLNMQDNGLTVILFVGV 127

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ K    G KV+LAAGDTFR+ AI+QL++W +R   D +    GSD A
Sbjct: 128 NGVGKTTTIGKLANKFKQEGKKVLLAAGDTFRAGAIEQLEVWGERVGVDVIKQHEGSDPA 187

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A + A++++ DVL+ DTAGRL N   LM  + K+ RV+ R  P APH VL VLDA
Sbjct: 188 AVMYDAIQSAKSREADVLLCDTAGRLQNKVNLMNELEKVKRVITREIPDAPHEVLLVLDA 247

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F      +G+++TK+DGTA+GG ++ I     IPV F+G+GEG++DL+
Sbjct: 248 TTGQNAMSQAKTFGKATDVSGIVLTKLDGTAKGGIVLAIRHELDIPVKFVGLGEGMDDLQ 307

Query: 300 PFVAKDFSAVIT 311
            F A  +   + 
Sbjct: 308 EFQADQYVHGLF 319


>gi|254282221|ref|ZP_04957189.1| signal recognition particle-docking protein FtsY [gamma
           proteobacterium NOR51-B]
 gi|219678424|gb|EED34773.1| signal recognition particle-docking protein FtsY [gamma
           proteobacterium NOR51-B]
          Length = 374

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 122/305 (40%), Positives = 188/305 (61%), Gaps = 3/305 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   +  +L +G   T  +  EG+ ++   ++ LD  + E LE  L++SD+G+    +++
Sbjct: 62  EQTGFYTRLKRGLGRTGSQFAEGLGNLFLGKKALDADLLEALEAQLLQSDLGIEATSRVI 121

Query: 68  EELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++L  +   K+++    +   V   +  ++ P  +P + +   +P VILVVGVNG GKTT
Sbjct: 122 DDLTARVSRKELADAEAVMAAVRASLLDIIEPCEQPLSVE-GKKPFVILVVGVNGAGKTT 180

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGK++ +    G KV+LAAGDTFR+AA++QL+ W +R     V    G+D+A++ ++  
Sbjct: 181 TIGKMANRFQREGKKVILAAGDTFRAAAVEQLQTWGERHGVPVVAQHTGADSASVLFDGL 240

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+  DVLI DTAGRL N S LM  + K++RV+++LDP APH  L VLDA TGQNA+
Sbjct: 241 EAARARGADVLIADTAGRLQNKSHLMDELEKVVRVMRKLDPDAPHETLLVLDAGTGQNAV 300

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F A  G +G+ +TK+DGTARGG    I    + P+ F+G+GEG  DL PFVA+DF
Sbjct: 301 SQAVQFDAAIGVSGIALTKLDGTARGGVTFAIAERLRRPIRFIGIGEGAEDLRPFVARDF 360

Query: 307 SAVIT 311
              + 
Sbjct: 361 VDALF 365


>gi|258593820|emb|CBE70161.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA, ffh family (fifty
           four homolog) [NC10 bacterium 'Dutch sediment']
          Length = 447

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 140/304 (46%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + +L   +  +    RL +        E+   L+ +D+   V +  +E +  +   
Sbjct: 2   FEGLTERLSGVLKKLRGHGRLTEENITEALREVRLALLEADVNFKVVKGFIERVRERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V E + ++L     P  +  S  P  I++VG++G GKTT   KL
Sbjct: 62  RDVLESLTPGQQVVKVVYEELVEVLGKTRAPLTY-ASDSPTTIMLVGLHGSGKTTTSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G   +L A DT R AA +QL+                  A  +  EA K A+ 
Sbjct: 121 ARWFVSEGRSPLLVAADTVRPAAREQLQTLGRALGVPVYAGP--GSALQVCQEARKLAKE 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  + +I+DT+GRLH +  LM  +  +           P   L V DA TGQ+A+     
Sbjct: 179 RGQNPVILDTSGRLHIDEPLMQELVAIAAA------TGPTERLMVADAMTGQDAVNSAVR 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+A    TG I+TK+DG +RGG  + I      P+ F+GVGE  + LEPF  +  ++ I 
Sbjct: 233 FNADLDLTGFILTKLDGDSRGGAALSIRSVTGKPIKFIGVGEKPDALEPFHPERLASRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|307277934|ref|ZP_07559018.1| signal recognition particle protein [Enterococcus faecalis TX0860]
 gi|306505331|gb|EFM74517.1| signal recognition particle protein [Enterococcus faecalis TX0860]
          Length = 472

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++ ++ I    ++ +  V+E   E+   L+ +D+ + V +   + +  +  
Sbjct: 2   AFESLTNRLQQAMSKIRRKGKVSEADVKEMMREIRLALLEADVNLQVVKDFTKPVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E + K L   +   N      P VI++ G+ G GKTT  GK
Sbjct: 62  GVEVLESLSPAQQIVKIVDEELTKTLGSETVELNKS-PKIPTVIMMTGLQGAGKTTFTGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K +      + +L AGD +R AAIDQLK+   +           ++   +  +    A
Sbjct: 121 LAKHLMKTENARPLLIAGDVYRPAAIDQLKVLGQQLEVPVFDMGTDANPVEIVRQGLALA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + KK D ++IDTAGRLH +  LM  + ++  +        P+ +L V+DA TGQ+A+   
Sbjct: 181 KEKKNDYVLIDTAGRLHIDEALMDELKQIKELAN------PNEILLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TKMDG  RGG  + I      P+ F+G GE + DLE F     S+ 
Sbjct: 235 DSFNEQLGITGVVITKMDGDTRGGAALSIRAVTGAPIKFVGSGEKLTDLEIFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|300858747|ref|YP_003783730.1| signal recognition particle protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686201|gb|ADK29123.1| signal recognition particle protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206454|gb|ADL10796.1| Signal recognition particle protein (Fifty-four-like protein)
           [Corynebacterium pseudotuberculosis C231]
 gi|302331010|gb|ADL21204.1| signal recognition particle protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276696|gb|ADO26595.1| Signal recognition particle protein (Fifty-four-like protein)
           [Corynebacterium pseudotuberculosis I19]
          Length = 535

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 147/318 (46%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ + S  ++ +     V  E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLGNALSGLRSKGKVTEADINAVAREIRLALLEADVSLPVVRGFIARIKDRALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      ++V+  V+E +  +L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSKALNPAEQVIKIVNEELTTILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           +K +   G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 AKHLQSQGHTPMLVACDLQRPGAVQQLQIVGERAGVPTFAPDPGTSIDSNDHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A +  ++A+  + DV+I+DTAGRL  +  LM     +   +       P  VL V+
Sbjct: 181 PVGVARQGIEEAKRAQHDVVIVDTAGRLGIDETLMTQARNIRDAI------RPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+A+   E F      TG+++TK+DG ARGG  + I      P+ F   GE + D
Sbjct: 235 DSMIGQDAVNTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F  +  S+ I G  D
Sbjct: 295 FDVFHPERMSSRILGMGD 312


>gi|329115921|ref|ZP_08244638.1| signal recognition particle protein [Streptococcus parauberis NCFD
           2020]
 gi|326906326|gb|EGE53240.1| signal recognition particle protein [Streptococcus parauberis NCFD
           2020]
          Length = 524

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    +I   ++L D     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNIRGKKKLSDKDVQEVTKEIRLALLEADVALPVVKTFIKRIRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q++L  V+E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQILKIVNEELTAILGSETSEI-VKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVEIVTKGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENRNDYVLIDTAGRLQIDEKLMGELRDVKAL------AQPNEILLVIDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 DEFNKQLEITGVVLTKIDGDTRGGAALSVREITGRPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|320108301|ref|YP_004183891.1| signal recognition particle-docking protein FtsY [Terriglobus
           saanensis SP1PR4]
 gi|319926822|gb|ADV83897.1| signal recognition particle-docking protein FtsY [Terriglobus
           saanensis SP1PR4]
          Length = 376

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 176/314 (56%), Gaps = 2/314 (0%)

Query: 1   MSNQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDI 58
           M  Q    E S  +  ++ +    T   L  GI  +++ +R +D    +ELE +LI SDI
Sbjct: 62  MYEQDNEEENSSGFFARMRQAVTRTRESLNSGIDSVLALTREVDTATLDELEAVLITSDI 121

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           GV  AQ+I+  L  +   + +     L  + +L    ++   +      +  P VI++VG
Sbjct: 122 GVDTAQEIIATLRQRALREGIDGGPELKRLLKLELLKILNSVRSPVARAATPPEVIMMVG 181

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL+          +L A DTFR+AAI+QL++WA R+  D V ++ G D 
Sbjct: 182 VNGTGKTTTSGKLAALFRAQHRTALLCAADTFRAAAIEQLEVWAQRSGVDIVKTKQGGDP 241

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           +A  Y+A    +A+KVDV+IIDTAGRLH  S LM  + KM R   ++ P APH    V+D
Sbjct: 242 SAALYDALNAGKARKVDVVIIDTAGRLHTKSGLMTELDKMRRTAAKVIPDAPHQTFLVMD 301

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN ++Q  +F   A  TG+++TK+DGTA+GG +I I     +PV + G+GE + DL
Sbjct: 302 ATTGQNGMQQARLFTEAAQVTGIVLTKLDGTAKGGIVIAIARELGLPVVYCGIGEKMEDL 361

Query: 299 EPFVAKDFSAVITG 312
             F A  F   + G
Sbjct: 362 IAFDADAFVDSLLG 375


>gi|307823514|ref|ZP_07653743.1| signal recognition particle protein [Methylobacter tundripaludum
           SV96]
 gi|307735499|gb|EFO06347.1| signal recognition particle protein [Methylobacter tundripaludum
           SV96]
          Length = 464

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/313 (29%), Positives = 152/313 (48%), Gaps = 17/313 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVE 68
              K T  F + + +L   +  I    RL +        E+   L+ +D+ + V    +E
Sbjct: 5   RFNKDTDMFDNLTDRLSSTLKKIKGQGRLTEDNIKDTLREVRMALLEADVALPVVTDFIE 64

Query: 69  ELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +      ++V       Q ++  V   +  ++   ++  N +    P +IL+ G+ G G
Sbjct: 65  RIKIGALGQEVQSSLSPGQSLIKLVQAELVAVMGEANEKLNLNAV-PPAIILMAGLQGAG 123

Query: 124 KTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT + KL + +  +   KV + + D +R AAI QL++ A+  S DF  S+I      +A
Sbjct: 124 KTTTVAKLGRWLKENQKKKVGVVSADVYRPAAIKQLQMLANELSLDFFESDISQKPVDIA 183

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             A + A+ K +DV+IIDTAGRLH +  +M  I ++   +       P   L V+D+ TG
Sbjct: 184 KNAIEAAKKKFLDVIIIDTAGRLHIDDEMMGEIKELHAAIN------PVETLFVVDSMTG 237

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A    + F+     TG+I+TK DG ARGG  + I      P+ F+G+GE  + LEPF 
Sbjct: 238 QDAAITAKAFNDALPLTGIILTKADGDARGGAALSIRHITGKPIKFIGMGEKTDALEPFY 297

Query: 303 AKDFSAVITGCLD 315
               ++ I G  D
Sbjct: 298 PDRIASRILGMGD 310


>gi|258544952|ref|ZP_05705186.1| signal recognition particle protein [Cardiobacterium hominis ATCC
           15826]
 gi|258519872|gb|EEV88731.1| signal recognition particle protein [Cardiobacterium hominis ATCC
           15826]
          Length = 453

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    R+ +        ++   LI +D+ + V ++++E +      
Sbjct: 2   FDNLSERLQGTFKKLRGQARITEENITQALRDVRMALIEADVALPVVKEVIETIKNAAIG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + +++   +   N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  QEVSLKLSPDQAFIKTVKNELVRIMGEENSALNL-ATQPPAVILMAGLQGSGKTTSSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++K+ +   KV L + D +R AAI+QLK  A +  A F+ S+     A +   A+  A+ 
Sbjct: 121 ARKLINEKKKVALVSADVYRPAAIEQLKTLAGQVGATFIPSDASEKPADITARAYDFAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVLI+DTAGRLH +  LM  I  +   LK      P   L V+D  TGQ+A    + 
Sbjct: 181 QYFDVLIVDTAGRLHIDDALMDEIRTLHAQLK------PIETLFVVDGMTGQDAANTAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ V   TG+++TK+DG ARGG  + I      P+ FLGVGE    LE F     ++ I 
Sbjct: 235 FNDVLPLTGVVLTKIDGDARGGAALSIRHITGKPIKFLGVGEKTEALEAFHPDRIASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|164414409|ref|NP_001105732.1| chloroplast srp54 receptor1 [Zea mays]
 gi|33413157|emb|CAD70570.1| chloroplast SRP receptor cpFtsY precursor [Zea mays]
 gi|238006492|gb|ACR34281.1| unknown [Zea mays]
          Length = 362

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 186/311 (59%), Gaps = 6/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL--DDGVREELEDLLIRSDIGVAVA 63
           +  ++ S + KL  GF+ T   L   + ++++   L   D V ++LE+ L+ SD G  ++
Sbjct: 52  IKEKAKSDVEKLFSGFSKTRENLS-VVDELLTYWNLADTDRVLDDLEEALLVSDFGPKIS 110

Query: 64  QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
            +IV+ L  + R  K  S   +   +   I ++L         +    +P VI++VGVNG
Sbjct: 111 FRIVDTLREEIRDGKLKSGAEIKAALKRCILELLTSKGGNSELNLGFRKPAVIMIVGVNG 170

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAA 180
            GKTT +GKL+ +  + G+KV++AAGDTFR+AA DQL++WA+RT ++ V   +  +   A
Sbjct: 171 GGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAQPPA 230

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A K+ + +  DV++ DT+GRLH N  LM  +    +VL +  P AP+ +L VLD T
Sbjct: 231 VLSQAVKRGKREGFDVVLCDTSGRLHTNYGLMEELVSCKKVLAKALPGAPNEILLVLDGT 290

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L+Q   F+ V G TG I+TK+DGTARGG ++ +V    IPV F+GVGEG+ DL+P
Sbjct: 291 TGLNMLQQAREFNDVVGVTGFILTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQP 350

Query: 301 FVAKDFSAVIT 311
           F A+ F   I 
Sbjct: 351 FDAEAFVEAIF 361


>gi|220931573|ref|YP_002508481.1| signal recognition particle protein [Halothermothrix orenii H 168]
 gi|219992883|gb|ACL69486.1| signal recognition particle protein [Halothermothrix orenii H 168]
          Length = 444

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 152/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + KL+  +  + +  +L         +E++  L+ +D+   V ++ ++ +  +   
Sbjct: 3   FEGLASKLQATLKKLRNKGKLSGKDVKSALKEVKLALLEADVNYKVVKQFIKRVQERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V++ + +++       +   S  P +I++VG+ G GKTT   KL
Sbjct: 63  HEVMESLTPGQQVIKIVNDELTELMGGNKSDLSIS-SKPPTIIMLVGLQGAGKTTSAAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +   G K +L AGD +R AAI QL++  DR           +    ++     +A++
Sbjct: 122 ARFLKKKGKKPLLVAGDIYRPAAIKQLQVLGDRLDIPVFSMGDKNSPVDISKAGISKAES 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRLH +  +M  +  +   +       PH +L V+DA TGQ+A+   E 
Sbjct: 182 NGNDVVIIDTAGRLHIDEEMMDELKSIKSNV------RPHEILLVVDAMTGQDAVNVAEN 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+I+TK+DG ARGG  + I      P+ F+G+GE ++ LE F     S+ I 
Sbjct: 236 FSESLGIDGIILTKLDGDARGGAALSIKAVTGKPIKFVGMGEKLDALESFHPDRMSSRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|222054584|ref|YP_002536946.1| signal recognition particle protein [Geobacter sp. FRC-32]
 gi|221563873|gb|ACM19845.1| signal recognition particle protein [Geobacter sp. FRC-32]
          Length = 449

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 142/304 (46%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+     +     + +D V+E L +    L+ +D+   V +  +E +  K   
Sbjct: 2   FDTLSDKLESVFKKLRGQGVMTEDNVKEALREVRLALLEADVNFKVVKDFIERVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+V+  V + +  ++           +  P  I++VG+ G GKTT  GKL
Sbjct: 62  TLVLQSLSPGQQVVKIVHDELVALMGGGEDNSLDLAAKPPVSIMMVGLQGAGKTTSCGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K +L   D +R AAI+QLKI   + S +   S+       +  +A K AQ 
Sbjct: 122 AKLLKSQRRKPLLVPADIYRPAAIEQLKILGRQLSIEVFDSQADQKPVDICSKALKYAQL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I DTAGR   +  LM  + ++    +      P  +L V DA TGQ A+     
Sbjct: 182 SGFDTVIFDTAGRHQIDDYLMDELVQIREAAE------PREILFVADAMTGQEAVNVAAG 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TG+++TK+DG A+GG  + I      PV F+G+GE ++ LE F A    + I 
Sbjct: 236 FDERLGITGVVLTKLDGDAKGGAALSIKAVTGKPVKFVGLGEKLDALEVFHADRLVSRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|75910555|ref|YP_324851.1| signal recognition particle subunit FFH/SRP54 (srp54) [Anabaena
           variabilis ATCC 29413]
 gi|75704280|gb|ABA23956.1| signal recognition particle subunit FFH/SRP54 (srp54) [Anabaena
           variabilis ATCC 29413]
          Length = 490

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 89/308 (28%), Positives = 148/308 (48%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L     S   KL+    D IS   + D +RE +   L+ +D+ + V +  + E+  
Sbjct: 1   MFDALADRLESAWKKLRGQ--DKISESNIQDALRE-VRRALLEADVNLQVVKDFISEVEA 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K    +V       Q+ +  V + + +++   + P   +   +P ++L+ G+ G GKTT 
Sbjct: 58  KAQGAEVISGVRPDQQFIKIVYDELVQVMGEENVPL-AEVEQKPTIVLMAGLQGTGKTTA 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+  +       +L A D +R AAIDQL     +           +D   +A +  +
Sbjct: 117 TAKLALHLRKLERSCLLVATDVYRPAAIDQLLTLGKQIDVPVFELGSDADPVEIARQGVE 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+A+ V+ +IIDTAGRL  +  +MA + ++   ++      PH  L V+D+ TGQ A  
Sbjct: 177 RAKAEGVNTVIIDTAGRLQIDEDMMAELARIKETVQ------PHETLLVVDSMTGQEAAN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               FH   G TG I+TKMDG +RGG  + +      P+ F+GVGE +  L+PF     +
Sbjct: 231 LTRTFHEQIGITGAILTKMDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPDRMA 290

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 291 SRILGMGD 298


>gi|329929610|ref|ZP_08283317.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           HGF5]
 gi|328936255|gb|EGG32707.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           HGF5]
          Length = 333

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 125/320 (39%), Positives = 194/320 (60%), Gaps = 2/320 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVA 61
            + ++S++ +  ++   G   T     E ++D+ I  +++D+   EELE++LI +D+GV 
Sbjct: 8   KESISSKTENVTKQFRDGLEKTRKGFIEKVSDLVIRRKKIDEEFYEELEEILIGADVGVN 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               ++++L  +   + +     L  V SE +  +L   S     +      VIL VGVN
Sbjct: 68  TVMDLMDDLRAEVKKRRIEDAADLQPVLSEKLMGLLRDDSSNELRENPDGITVILFVGVN 127

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +    G KV+LAAGDTFR+ AI+QL++W +R   + +  + GSD AA
Sbjct: 128 GVGKTTTIGKLAHRYKQEGKKVLLAAGDTFRAGAIEQLEVWGERVGVEVIKQQPGSDPAA 187

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+ ++ DVL+ DTAGRL N + LM  + K+ RV++R  P APH VL VLDAT
Sbjct: 188 VMFDAVQAAKQRQADVLLCDTAGRLQNKTNLMEELNKIFRVIQREIPSAPHEVLMVLDAT 247

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q ++F   +G TGL++TK+DGTA+GG +I I     +PV  +G+GE + DL+ 
Sbjct: 248 TGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRQELNLPVKLVGLGEKMGDLQT 307

Query: 301 FVAKDFSAVITGCLDYGEEK 320
           F ++ F   +   L   EE 
Sbjct: 308 FDSEQFVHALFAGLIKEEEN 327


>gi|15673598|ref|NP_267772.1| signal recognition particle protein [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12724623|gb|AAK05714.1|AE006391_13 signal recognition particle protein Ffh [Lactococcus lactis subsp.
           lactis Il1403]
 gi|326407081|gb|ADZ64152.1| signal recognition particle subunit [Lactococcus lactis subsp.
           lactis CV56]
          Length = 518

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L+    ++   +++ +     + +E+   L+ +D+ + V +K ++ +  +  
Sbjct: 2   AFENLTERLQNVFKNLRGKKKITETDVTEITKEIRVALLEADVALPVVKKFIKAIRERAV 61

Query: 76  AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +VS      Q+V+  V E +  +L              P +I++VG+ G GKTT  GK
Sbjct: 62  GVEVSEALNPAQQVIKIVDEELTAILGGGEAEL-LKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+KK+ +    + ++ A D +R AAIDQLK   ++                +      +A
Sbjct: 121 LAKKLKEEQNARPLMIAADVYRPAAIDQLKTLGEQLEIPVYDEGTAEKPVNIVRNGLLKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q ++ D ++IDTAGRL  +  LM  + ++  + +      P  +L V+DA TGQ A +  
Sbjct: 181 QEERKDYVLIDTAGRLEIDDTLMNELQEIKALAE------PTEILLVVDAMTGQVAAQVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F G GE + DLE F     S+ 
Sbjct: 235 KTFDEKLDITGVIITKLDGDTRGGAALSIREITGKPIKFTGTGEKLTDLEVFYPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|320530761|ref|ZP_08031805.1| signal recognition particle protein [Selenomonas artemidis F0399]
 gi|320137048|gb|EFW28986.1| signal recognition particle protein [Selenomonas artemidis F0399]
          Length = 458

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 150/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    +L +        E+   L+ +D+   V +  V+ +  +   
Sbjct: 3   FENLSDRLQGIFKKMRGHGKLTEDDVNDAMREVRMALLEADVNFKVVKDFVKRVKERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V     + Q V+  V E + +++       N    + P VI++VG+ G GKTT  GKL
Sbjct: 63  QEVLDTLTAAQAVIKIVDEELTELMGGTESRLNIS-PNPPTVIMLVGLQGSGKTTSAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L A D +R AAI QL++  ++       S+   DA A+A  +   + A
Sbjct: 122 ALMLKKQGKRPLLVADDIYRPAAIKQLEVIGEKVGVPVF-SQGQEDAVAIARASIAYSAA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRL  +  LM  +  +   ++      PH +L V+DA TGQ A+     
Sbjct: 181 HANDVVIIDTAGRLQIDETLMQELRDIKAAVQ------PHEILLVVDAMTGQEAVNVAAA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A  G  G++MTK+DG ARGG  + I      PV F+G+GE ++ LE F     ++ I 
Sbjct: 235 FDASLGLDGIVMTKLDGDARGGAALSIKAVTGRPVKFVGMGEKLDPLEVFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|291278684|ref|YP_003495519.1| signal recognition particle protein [Deferribacter desulfuricans
           SSM1]
 gi|290753386|dbj|BAI79763.1| signal recognition particle protein [Deferribacter desulfuricans
           SSM1]
          Length = 447

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+   KL      I    ++ +   ++    +   L+ +D+   V +K +  +  K   
Sbjct: 2   FATLHDKLNAVFKKIKGQAKITEDNIKDAVKQVRLALLEADVNYKVVKKFISAVQEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGK 130
           ++V       Q  +  V + +  +L    +      +   P  I++VG+ G GKTT  GK
Sbjct: 62  EEVLKSLTPDQVFIKIVHDELVNVLGGDDQSTKIKLNPIPPTKIMLVGLQGSGKTTTAGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K     G  V+L A D +R AAIDQL+I   +   D        DA  +A EA + A+
Sbjct: 122 LAKYFQKNGKDVLLVADDIYRPAAIDQLEILGKQLKVDVFSKRDEQDAVKIAKEAVQHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   DV+IIDTAGRLH +  LM  +  +   +       P  +L V DA TGQ+A+   +
Sbjct: 182 SAAKDVVIIDTAGRLHIDETLMEELKNIKEAIN------PDEILFVADAMTGQDAVNVAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +   TG+I+TK+DG ARGG  + I      P+ F+G GE ++  EPF     ++ I
Sbjct: 236 TFNEMLDITGVILTKLDGDARGGAALSIREVTGKPLKFVGTGEKLDAFEPFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|225874709|ref|YP_002756168.1| signal recognition particle protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225792689|gb|ACO32779.1| signal recognition particle protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 459

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 22/310 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+    ++     + +        E+   L+ +D+ + VA++++E +  +   
Sbjct: 2   FDNLSEKLQRAFKNLRGQGTVTEENIQEALREIRVALLEADVNLNVAKELIEHIRERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       ++V+  V + +  +L   +  F +  S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QQVMTALSPTEQVIKIVRDELVDLLGKDTARFQF-ASRPPTVILMAGLQGSGKTTTSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA------AALAYEA 185
           +  +   G + ML + D +R AA +QLK+ A+  +A     +   +A        LA EA
Sbjct: 121 AAWLKKGGHRPMLVSVDVYRPAAREQLKVVANSINAKIYEGDTKGEAAGTALVERLAKEA 180

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++A     D LI+DTAGRLH +  LM  + ++  +L      AP  +L V DA TGQ+A
Sbjct: 181 RREAVITGCDTLIVDTAGRLHIDDNLMDEMTRLKALL------APQEILFVADAMTGQDA 234

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +R  + FH     TG+++TKMDG ARGG  + I      PV F+G GE  +  EPF    
Sbjct: 235 VRSAQEFHRKLALTGVVLTKMDGDARGGAALSIRHVTGQPVKFIGTGEKPDAFEPFHPDR 294

Query: 306 FSAVITGCLD 315
             + I G  D
Sbjct: 295 IVSRILGMGD 304


>gi|225025909|ref|ZP_03715101.1| hypothetical protein EUBHAL_00145 [Eubacterium hallii DSM 3353]
 gi|224956695|gb|EEG37904.1| hypothetical protein EUBHAL_00145 [Eubacterium hallii DSM 3353]
          Length = 313

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 119/305 (39%), Positives = 178/305 (58%), Gaps = 4/305 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   +  +L  G   T   +  G+  I     ++DD   EELE++LI  D+GV     I+
Sbjct: 3   EKKGFFSRLVSGLTKTRKNIASGLDSIFHGFSKIDDDFYEELEEILIMGDLGVDTTMNII 62

Query: 68  EELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           E+L  +   + +         + ++I K +        +++ +R  V+LV+GVNGVGKTT
Sbjct: 63  EDLQERVKEEHIKEPAECRQLLIDIIKKQME--VDETAYEYENRTSVVLVIGVNGVGKTT 120

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ ++     KV++AA DTFR+AAI+QL  W++R   D +  + GSD AA+ Y+A 
Sbjct: 121 TIGKLAAQLKSQNKKVIMAAADTFRAAAIEQLTEWSNRAGVDIIAQQEGSDPAAVIYDAC 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+++  DVL+ DTAGRLHN   LM  + K+ RV++R  P A    L VLD TTGQNAL
Sbjct: 181 QAAKSRHADVLLCDTAGRLHNKKNLMNELSKIRRVIEREFPEAYLETLIVLDGTTGQNAL 240

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F  V+  +G+++TK+DGTA+GG  I I     IPV ++G+GE I DL+ F A  F
Sbjct: 241 VQAKQFKEVSDISGIVLTKLDGTAKGGIAIAIQAELGIPVKYIGIGEKIEDLQKFDADSF 300

Query: 307 SAVIT 311
              + 
Sbjct: 301 VNALF 305


>gi|94988647|ref|YP_596748.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS9429]
 gi|94992471|ref|YP_600570.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS2096]
 gi|94542155|gb|ABF32204.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS9429]
 gi|94545979|gb|ABF36026.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS2096]
          Length = 522

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 148/310 (47%), Gaps = 17/310 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +T  F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  
Sbjct: 1   MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +    ++       Q++L  V+E +  +L   +   +      P +I++VG+ G GKTT 
Sbjct: 61  RAIGHEIIDTLDPTQQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGAGKTTF 119

Query: 128 IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GKL+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  
Sbjct: 120 AGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGL 179

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+  + D ++IDTAGRL  +  LM  +  +  +        P  +L V+D+  GQ A 
Sbjct: 180 EQARENRNDYVLIDTAGRLQIDEKLMEELRDVKAL------AQPDEILLVVDSMIGQEAA 233

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     
Sbjct: 234 NVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRM 293

Query: 307 SAVITGCLDY 316
           S+ I G  D 
Sbjct: 294 SSRILGMGDL 303


>gi|51892595|ref|YP_075286.1| signal recognition particle [Symbiobacterium thermophilum IAM
           14863]
 gi|51856284|dbj|BAD40442.1| signal recognition particle [Symbiobacterium thermophilum IAM
           14863]
          Length = 320

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 140/308 (45%), Positives = 197/308 (63%), Gaps = 4/308 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQK 65
               +S+  +L  G   T   L   +  ++S  R++DD + +ELE+ LIR D+GVA + K
Sbjct: 12  GESPVSFFERLKAGLQKTKEALIGQVNTVMSVFRKIDDDLFDELEEALIRGDVGVATSAK 71

Query: 66  IVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +VEEL  +   K +     +L  + EL+ + L   + P   +      VILVVGVNGVGK
Sbjct: 72  LVEELRREARQKGLKNGDELLPLLKELVAERLGSGAAPLRLN-EGGLTVILVVGVNGVGK 130

Query: 125 TTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT IGKL++ +  D GLKV+LAA DTFR+AA+DQLK+W +R  A+ V    G+D AA+A+
Sbjct: 131 TTTIGKLARHLREDRGLKVVLAAADTFRAAAMDQLKVWGERAGAEVVAGPEGADPAAVAF 190

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  K A+A   DVLI+DTAGRLHN + LMA +GK+ RVL R  P APH  L VLDATTGQ
Sbjct: 191 DGVKAARASGADVLIVDTAGRLHNKAHLMAELGKIARVLGREVPGAPHETLLVLDATTGQ 250

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA++Q  +F      TG+ +TK+DGTA+GG ++ I  T ++PV F+GVGE ++DL+PF  
Sbjct: 251 NAIQQTRLFKETVPVTGIALTKLDGTAKGGVVVAIADTEQVPVKFIGVGERLDDLQPFDP 310

Query: 304 KDFSAVIT 311
           + F   + 
Sbjct: 311 RQFVEALF 318


>gi|94970062|ref|YP_592110.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552112|gb|ABF42036.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus
           Koribacter versatilis Ellin345]
          Length = 454

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 152/308 (49%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+     +    +L     +    E+   L+ +D+   V +++V+ +  K   
Sbjct: 2   FDNLSDKLQRAFKSLRGQGKLTPENMEEALREIRLALLEADVNFKVVKEVVDRIQYKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       ++V+  V + +  +L   +    +  S  P +IL+ G+ G GKTT  GKL
Sbjct: 62  EDVMTALSPAEQVVKIVRDELIAILGKDTAKVKF-ASQPPTIILMAGLQGSGKTTTSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA----LAYEAFK 187
           +  + + G + ML + D +R AA +QLK+ A   +A     ++          LA EA +
Sbjct: 121 AHWLKNGGHRPMLVSVDVYRPAAREQLKVVAQAINAKLYEGKVEEANTDTVVRLAKEARR 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A +   ++LI+DTAGRLH +  LM  +  +  +L       P  +L V DA TGQ+A+ 
Sbjct: 181 EAISNGCNILIVDTAGRLHIDDQLMDEMQHLKTLLN------PQEILFVADAMTGQDAVN 234

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + FH     TG+++TKMDG ARGG  + I      P+ F+GVGE  + LEPF      
Sbjct: 235 SAKEFHDKLTLTGVVLTKMDGDARGGAALSIRQVTGQPIKFIGVGEKYDALEPFHPDRIV 294

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 295 GRILGMGD 302


>gi|262280102|ref|ZP_06057887.1| signal recognition particle GTPase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260453|gb|EEY79186.1| signal recognition particle GTPase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 471

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ-----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V  Q       +  V + + KM+   ++  +   +  P V+L+ G+ G GKTT   KL
Sbjct: 62  QEVMTQLSPGQAFVKIVYDELTKMMGEANETLDLS-AKPPVVVLLAGLQGAGKTTTAAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM  + D +R AAI QL+  +    A F+ S+       +   A +QA+
Sbjct: 121 ARFLKERQKKKVMTVSADVYRPAAIKQLETVSAEVGAGFIPSDASEKPIDIVNRAIEQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH ++ +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 IQFADVLIVDTAGRLHVDADMMDEIKELHAAVK------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF     +  I
Sbjct: 235 AFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPDRVAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|255326590|ref|ZP_05367667.1| signal recognition particle protein [Rothia mucilaginosa ATCC
           25296]
 gi|283457889|ref|YP_003362490.1| signal recognition particle GTPase [Rothia mucilaginosa DY-18]
 gi|255296330|gb|EET75670.1| signal recognition particle protein [Rothia mucilaginosa ATCC
           25296]
 gi|283133905|dbj|BAI64670.1| signal recognition particle GTPase [Rothia mucilaginosa DY-18]
          Length = 525

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 143/313 (45%), Gaps = 25/313 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLSEADIDATVREIRRALLDADVAVPVVREFTAHVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++  N   S  P +I++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPSQQIVKIVNEELVSILGGSTRRINMAKSG-PTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---------GSDAAALA 182
           +  +   G   ML A D  R  A+ QLK+  +R                     D   +A
Sbjct: 121 AHWLKGQGHTPMLIASDLQRPNAVTQLKVVGERAGVPVYAPHPGVTSEFDVPTGDPVQVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +   +A+AK  DV+I+DTAGRL  ++ LM     +   ++      PH VL V+DA  G
Sbjct: 181 RDGVAEARAKLHDVVIVDTAGRLGVDAELMQQARNIRDAIE------PHEVLFVIDAMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+     F+     TG++++K+DG ARGG  + +      P+ F   GE + D E F 
Sbjct: 235 QDAVNTANAFNEGVDFTGVVLSKLDGDARGGAALSVASVTGKPIMFASTGENVTDFEQFH 294

Query: 303 AKDFSAVITGCLD 315
               ++ I    D
Sbjct: 295 PDRMASRILDMGD 307


>gi|229098314|ref|ZP_04229261.1| Signal recognition particle protein [Bacillus cereus Rock3-29]
 gi|229104407|ref|ZP_04235076.1| Signal recognition particle protein [Bacillus cereus Rock3-28]
 gi|229117331|ref|ZP_04246709.1| Signal recognition particle protein [Bacillus cereus Rock1-3]
 gi|228666231|gb|EEL21695.1| Signal recognition particle protein [Bacillus cereus Rock1-3]
 gi|228679105|gb|EEL33313.1| Signal recognition particle protein [Bacillus cereus Rock3-28]
 gi|228685212|gb|EEL39143.1| Signal recognition particle protein [Bacillus cereus Rock3-29]
          Length = 449

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 145/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTELMGGEQSKIAV-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + K+  V        P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAN------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ +E F  +  ++ 
Sbjct: 235 QSFHDQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|217974261|ref|YP_002359012.1| signal recognition particle protein [Shewanella baltica OS223]
 gi|229220585|ref|YP_001049596.2| signal recognition particle protein [Shewanella baltica OS155]
 gi|304409370|ref|ZP_07390990.1| signal recognition particle protein [Shewanella baltica OS183]
 gi|307303728|ref|ZP_07583481.1| signal recognition particle protein [Shewanella baltica BA175]
 gi|217499396|gb|ACK47589.1| signal recognition particle protein [Shewanella baltica OS223]
 gi|304351888|gb|EFM16286.1| signal recognition particle protein [Shewanella baltica OS183]
 gi|306912626|gb|EFN43049.1| signal recognition particle protein [Shewanella baltica BA175]
          Length = 457

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + K +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A   + +F  S++      +A  A   A+
Sbjct: 121 GKFLRERHKKSVLVVSADVYRPAAIKQLETLAQEVAVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|65321173|ref|ZP_00394132.1| COG0541: Signal recognition particle GTPase [Bacillus anthracis
           str. A2012]
          Length = 464

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 145/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTELMGGEQSKIAI-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAG LH +  LM  + K+  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGHLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ LE F  +  ++ 
Sbjct: 235 QSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDALEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|210615865|ref|ZP_03290827.1| hypothetical protein CLONEX_03046 [Clostridium nexile DSM 1787]
 gi|210150068|gb|EEA81077.1| hypothetical protein CLONEX_03046 [Clostridium nexile DSM 1787]
          Length = 449

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 151/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++ S  RL +       +E++  L+ +D+   V +  V+++  +  
Sbjct: 2   AFDSLSEKLQNVFKNLRSKGRLTENDVKAALKEVKMALLEADVNFKVVKGFVKDVQERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +     +      VI++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEELIKLMGSETTEIKLEPGQATTVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G K +L A D +R AAI QL+I  ++   +          A +A  A + A 
Sbjct: 122 IAGKLKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSMGENHKPANIAKAALEHAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+    
Sbjct: 182 KNGNNIVILDTAGRLHIDEDMMAELQEIKETVT------VHQTILVVDAMTGQDAVNVAS 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 SFNEKIGIDGVIVTKLDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|281412663|ref|YP_003346742.1| signal recognition particle protein [Thermotoga naphthophila
           RKU-10]
 gi|281373766|gb|ADA67328.1| signal recognition particle protein [Thermotoga naphthophila
           RKU-10]
          Length = 433

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 154/304 (50%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL     ++    ++ +  V++ + ++   L+ +D+   V ++ V+ +L K   
Sbjct: 2   FENLQEKLSRVFKNLSGRGKITEKNVKDAIREVKLSLLEADVNYKVVKEFVDHVLQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V + + +++   ++P      HRP  I++VG+ G GKTT   KL
Sbjct: 62  EEVLRSLTPDQQFIKIVRDELVRIMGEKNEPLRL--VHRPAPIMMVGLQGSGKTTTCAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G   +L A D +R AA+DQL    ++   + V  +       +  EA   A++
Sbjct: 120 AKLLKKEGRNPLLVAADLYRPAAVDQLVKLGNQIGVNVV-HDYNKTPVEIVKEAVDVAES 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D+LI+DTAGRLH +  +M  + ++ ++L       P  +L V+DA  GQ+A+   ++
Sbjct: 179 TGKDILIVDTAGRLHIDEEMMKELEEIKKILN------PDEILLVVDAMMGQDAVNTAKV 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG ++TKMDG ARGG ++ I      PV F+G  E I+ LEPF     +  I 
Sbjct: 233 FDERLDLTGFVVTKMDGDARGGVILSIKYVTGKPVKFIGTSEKIDGLEPFHPDRIANRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|253755628|ref|YP_003028768.1| signal recognition particle protein [Streptococcus suis BM407]
 gi|251818092|emb|CAZ55886.1| signal recognition particle protein [Streptococcus suis BM407]
          Length = 512

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 140/307 (45%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDIQEATKEIRLALLEADVALPVVKDFIKKVRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++ G+ G GKTT  GK
Sbjct: 62  GHEVIETLNPAQQIIKIVDEELTAVLGSETSEI-IKSPKIPTIIMMAGLQGAGKTTFTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + +L A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKQEENARPLLIAADIYRPAAIDQLKTLGQQIDVPVFELGNQVPALEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  + ++           P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDQALMTELREIKEF------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNDQLAITGVILTKIDGDTRGGAALSVRHITGQPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|254421926|ref|ZP_05035644.1| signal recognition particle protein [Synechococcus sp. PCC 7335]
 gi|196189415|gb|EDX84379.1| signal recognition particle protein [Synechococcus sp. PCC 7335]
          Length = 491

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S + +     +    ++ D        E+   L+ +D  + V +  V ++  K   
Sbjct: 2   FEALSEQFESAWKKLRGQDKISDANITEALREVRRALLEADANLDVVKGFVADVKEKAQG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+ +  V + + + +   + P   D  ++P V+L+ G+ G GKTT   KL
Sbjct: 62  ADVVSGVRPDQQFIKIVYDELVETMGDTNVPL-ADSENKPTVVLMAGLQGTGKTTASAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       +L A D +R AAIDQL     +           ++   +A +  K+A+A
Sbjct: 121 ALHLRKQERSALLVATDVYRPAAIDQLLTLGKQIDVPVFEIGADANPVEIARQGLKKAKA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +D +IIDTAGRL  ++ +MA + ++  V        P  VL V+DA TGQ A      
Sbjct: 181 DGIDTVIIDTAGRLQIDTDMMAELAQVKEV------AQPDEVLLVVDAMTGQEAATLTRT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TKMDG +RGG  + +      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FHDEIGITGAILTKMDGDSRGGAALSVRRISGQPIKFIGVGEKVEALQPFYPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|94994460|ref|YP_602558.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS10750]
 gi|94547968|gb|ABF38014.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS10750]
          Length = 522

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 149/310 (48%), Gaps = 17/310 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +T  F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  
Sbjct: 1   MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +    ++       Q++L  V+E +  +L   +   +      P +I++VG+ G GKTT 
Sbjct: 61  RAIGHEIIDTLDPTQQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGAGKTTF 119

Query: 128 IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GKL+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  
Sbjct: 120 AGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGL 179

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A 
Sbjct: 180 EQARENRNDYVLIDTAGRLQIDEKLMEELRDVKAL------AQPNEILLVVDSMIGQEAA 233

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     
Sbjct: 234 NVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRM 293

Query: 307 SAVITGCLDY 316
           S+ I G  D 
Sbjct: 294 SSRILGMGDL 303


>gi|116621691|ref|YP_823847.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224853|gb|ABJ83562.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 455

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+    ++    +L     +    E+   L+ +D+   V ++++E +  K   
Sbjct: 2   FDNLSDKLQRVFKNLRGEGKLSAENMETALREIRMALLEADVNFKVVKQLIENIKQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V E + K+L        +  +  P V ++VG+ G GKTT  GKL
Sbjct: 62  EEVLNALSPSQQVIKIVHEELIKILGSHESKLRY-ANDPPSVFMIVGLQGSGKTTSTGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQAQ 190
           ++ +S  G   M+ + D +R AA +QLK+ A            G      LA  A ++A 
Sbjct: 121 ARWLSKNGHAPMVVSVDVYRPAAREQLKVVARDVKQPIYEGAPGETAPLDLARSARREAT 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRLH +  LM  + ++   L       P  +L V DA TGQ+A++  +
Sbjct: 181 NSGRDVLLVDTAGRLHIDDDLMVELQQLKEQLN------PVEILFVADAMTGQDAVKSAD 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G TG+I+TKMDG ARGG  + I      P+ F+GVGE ++ LE F     +  I
Sbjct: 235 EFHKRLGITGVILTKMDGDARGGAALSIRSVTGQPLKFVGVGEKLDALEAFHPDRAANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|332701670|ref|ZP_08421758.1| signal recognition particle protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551819|gb|EGJ48863.1| signal recognition particle protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 508

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+          RL +        E+   L+ +D+   V ++ V+ +  K   
Sbjct: 2   FESLSDRLESVFKRFKGQGRLTEENIQEGLREVRLALLEADVNFKVVKQFVDRVREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V + + ++L   +  F+   S +P  +++VG+ G GKTT  GKL
Sbjct: 62  QDVQGSLTPGQQVVKVVHDELVELLGGKTSAFDVKGS-KPLTVMMVGLQGSGKTTSAGKL 120

Query: 132 SKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K  L   D +R AAIDQL     +       S    +   +  +A + A+
Sbjct: 121 ALYLRREHKMKPFLVPADVYRPAAIDQLTKLGAQIDVPVYPSSTDMNPVDICRDALQVAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  D+++ DTAGRLH +  LM  +  +   +       P  +L V DA TGQ+A+   +
Sbjct: 181 DKGYDLVLFDTAGRLHIDERLMEELANIKAAVS------PREILFVADAMTGQDAVNVAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A    +G+++TKMDG ARGG  + I       V F+G+GE ++++E F     ++ I
Sbjct: 235 SFDAKLEISGVVLTKMDGDARGGAALSIKSVTGKSVKFVGMGEKLSEMEVFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|313608187|gb|EFR84220.1| signal recognition particle protein [Listeria monocytogenes FSL
           F2-208]
          Length = 450

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GADVMKSLTPGQQVIKIVQEELTSLMGGEESKIGT-ADRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  +       AP  +L V+D+ TGQ+A+   
Sbjct: 181 KEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------AAPTEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+  GE +  LE F     ++ 
Sbjct: 235 QSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|302670925|ref|YP_003830885.1| signal recognition particle protein Ffh [Butyrivibrio
           proteoclasticus B316]
 gi|302395398|gb|ADL34303.1| signal recognition particle protein Ffh [Butyrivibrio
           proteoclasticus B316]
          Length = 457

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 152/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++    RL +       +E++  L+ +D+   V ++ +  +  +  
Sbjct: 2   AFESLTDKLQNVFRNLRGKGRLTEEDVKLALKEVKMALLEADVSFKVVKQFISAVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +       ++   V+++ G+ G GKTT   K
Sbjct: 62  GEDVLNGLNPGQMVIKIVNEEMISLMGSETTEIKLQPTNEITVLMMCGLQGAGKTTTAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G K +L A D +R AAIDQL+I A +   DF      +D   +A  + ++A+
Sbjct: 122 IAGKLKLKGRKPLLVACDIYRPAAIDQLQINASKQEVDFFTLGSHADPVDIAKASIEEAR 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  +V+IIDTAGRL  + I+M  +  +   +        H  L V+DA TGQ A+    
Sbjct: 182 KKGNNVVIIDTAGRLQIDDIMMQELVDIKNAVG------VHQTLLVVDAMTGQEAVNVAS 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I++KMDG +RGG  +        P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 EFNEKVGVDGIILSKMDGDSRGGAALSTKAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|323127254|gb|ADX24551.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 520

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q++L  V+E +  +L   +   +      P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHLAVDIVRKGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENRNDYVLIDTAGRLQIDEKLMEELRDVKAL------AQPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 YEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|229541118|ref|ZP_04430178.1| signal recognition particle-docking protein FtsY [Bacillus
           coagulans 36D1]
 gi|229325538|gb|EEN91213.1| signal recognition particle-docking protein FtsY [Bacillus
           coagulans 36D1]
          Length = 332

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 119/309 (38%), Positives = 184/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             K   ++ +   K   G A T       + ++++  R++D+   EELE++LI++D+G  
Sbjct: 8   KDKFTRQADTVTDKFKTGLAKTRDNFSSKVNNLVARYRKIDEDFFEELEEILIQADVGFQ 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHR-PHVILVVG 118
              ++++EL  +   K++     +  V   +L+         P   +       VIL VG
Sbjct: 68  TVMELIDELKMEVKRKNIKAPSEVQSVISEKLVDIYSAGEDAPNQLNIQDGALTVILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+  +   G KV++AAGDTFR+ AI+QL++W +R   + +    GSD 
Sbjct: 128 VNGVGKTTTIGKLAHMLKQQGKKVIMAAGDTFRAGAIEQLEVWGERVGVEVIKHSEGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A + A+A+  DVL+ DTAGRL N   LM  + K+ RV++R  P APH VL VLD
Sbjct: 188 AAVMFDAVQAAKARNADVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVLLVLD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL
Sbjct: 248 ATTGQNAMVQAKTFKEATDVTGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGEKMDDL 307

Query: 299 EPFVAKDFS 307
           +PF A+ + 
Sbjct: 308 QPFDAEKYV 316


>gi|52785575|ref|YP_091404.1| hypothetical protein BLi01816 [Bacillus licheniformis ATCC 14580]
 gi|163119430|ref|YP_078989.2| signal recognition particle (docking protein) [Bacillus
           licheniformis ATCC 14580]
 gi|319646023|ref|ZP_08000253.1| FtsY protein [Bacillus sp. BT1B_CT2]
 gi|52348077|gb|AAU40711.1| FtsY [Bacillus licheniformis ATCC 14580]
 gi|145902937|gb|AAU23351.2| signal recognition particle (docking protein) [Bacillus
           licheniformis ATCC 14580]
 gi|317391773|gb|EFV72570.1| FtsY protein [Bacillus sp. BT1B_CT2]
          Length = 328

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 129/321 (40%), Positives = 199/321 (61%), Gaps = 4/321 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+  ++ S   K  +G A T    +E + +++S  R++D+   EELE++LI +D+GVA
Sbjct: 8   KEKITQQTDSVSGKFKEGLAKTRNTFQERVNELVSRYRKVDEDFFEELEEVLIGADVGVA 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF--SHRPHVILVVG 118
              ++++EL ++   +++   + +  V SE + ++     +  +       R ++IL VG
Sbjct: 68  TVMELIDELKSEVKRRNIQDPKEVQSVISEKLVEIYEGGEQEASELRVEDGRLNIILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +    G  V+LAAGDTFR+ AIDQL++W +R  A  V    GSD 
Sbjct: 128 VNGVGKTTTIGKLAHQFIKEGKNVVLAAGDTFRAGAIDQLEVWGERVGAHVVKQAEGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+  DVL+ DTAGRL N   LM  + K+ RV++R  P APH VL VLD
Sbjct: 188 AAVIYDAVQAAKARGADVLLCDTAGRLQNKVNLMKELEKVKRVIQREVPDAPHEVLLVLD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q   F      +G+++TK+DGTA+GG ++ I    +IPV F+G+GE ++DL
Sbjct: 248 ATTGQNAMTQAREFSKATDVSGIVLTKLDGTAKGGIVLAIRHELQIPVKFVGLGEKMDDL 307

Query: 299 EPFVAKDFSAVITGCLDYGEE 319
           +PF A+ +   +   L   EE
Sbjct: 308 QPFEAESYVYGLFSDLIEKEE 328


>gi|229496218|ref|ZP_04389938.1| signal recognition particle-docking protein FtsY [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316796|gb|EEN82709.1| signal recognition particle-docking protein FtsY [Porphyromonas
           endodontalis ATCC 35406]
          Length = 317

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 123/302 (40%), Positives = 177/302 (58%), Gaps = 6/302 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L  G   T   +   I+  ++ + ++DD V + LED+LI SD+GV    KI++ +  +  
Sbjct: 15  LDTGLEKTKDSVLGKISRALAGKSKVDDEVLDNLEDVLISSDVGVDTTLKIIKRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   +   I  +L          F      +P+VI+VVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTAELNGILRSEIEALLTESGTIDGDSFVLPTESKPYVIMVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV++ A DTFR+AAIDQL +WA+R     +  ++G+D A++AY+    A 
Sbjct: 135 LAYQFKAAGHKVVIGAADTFRAAAIDQLSVWAERVDVPMIKQKMGADPASVAYDTVASAV 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DV++IDTAGRLHN   LM  + K+ RV++++ P AP  VL VLD +TGQNA  Q  
Sbjct: 195 AQDADVVLIDTAGRLHNKVGLMNELTKIKRVMQKVVPDAPQEVLLVLDGSTGQNAFEQAR 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A      L +TK+DGTA+GG +I I     IPV ++G+GE I DL+ F   +F A +
Sbjct: 255 QFTAATEVNALAVTKLDGTAKGGVVIGISDQFNIPVKYIGLGEKIEDLQVFRKHEFVASL 314

Query: 311 TG 312
            G
Sbjct: 315 FG 316


>gi|145637665|ref|ZP_01793319.1| Signal recognition particle protein [Haemophilus influenzae PittHH]
 gi|145269125|gb|EDK09074.1| Signal recognition particle protein [Haemophilus influenzae PittHH]
          Length = 462

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKAALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|15644313|ref|NP_229365.1| signal recognition particle protein [Thermotoga maritima MSB8]
 gi|170289017|ref|YP_001739255.1| signal recognition particle protein [Thermotoga sp. RQ2]
 gi|4982134|gb|AAD36632.1|AE001802_1 signal recognition particle protein [Thermotoga maritima MSB8]
 gi|170176520|gb|ACB09572.1| signal recognition particle protein [Thermotoga sp. RQ2]
          Length = 433

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 154/304 (50%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL     ++    ++ +  V++ + ++   L+ +D+   V ++ V+ +L K   
Sbjct: 2   FENLQEKLSRVFKNLSGRGKITEKNVKDAIREVKLSLLEADVNYKVVKEFVDHVLQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V + + +++   ++P      HRP  I++VG+ G GKTT   KL
Sbjct: 62  EEVLRSLTPDQQFIKIVRDELVRIMGEKNEPLRL--VHRPAPIMMVGLQGSGKTTTCAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G   +L A D +R AA+DQL    ++   + V  +       +  EA   A++
Sbjct: 120 AKLLKKEGRNPLLVAADLYRPAAVDQLVKLGNQIGVNVV-HDYNKTPVEIVKEAVDVAES 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLI+DTAGRLH +  +M  + ++ ++L       P  +L V+DA  GQ+A+   ++
Sbjct: 179 TGKDVLIVDTAGRLHIDEEMMKELEEIKKILN------PDEILLVVDAMMGQDAVNTAKV 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG ++TKMDG ARGG ++ I      PV F+G  E ++ LEPF     +  I 
Sbjct: 233 FDERLDLTGFVVTKMDGDARGGVILSIKYVTGKPVKFIGTSEKLDGLEPFHPDRIANRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|124023656|ref|YP_001017963.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9303]
 gi|123963942|gb|ABM78698.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9303]
          Length = 494

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++ D       +++   L+ +D+ + V ++ V+E+  K   
Sbjct: 2   FEELSARFEDAVKGLRGQAKISDTNVEDALKQVRRALLGADVSLEVVREFVDEVRQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + +++   + P   +    P V+L+ G+ G GKTT   KL
Sbjct: 62  AEVVRGVTPDQKFVQVVHQQLVEVMGGDNAPM-AEAKDSPTVVLMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + D G + ++ A D +R AAIDQL+   ++   D            +A     +A+ 
Sbjct: 121 GLHLKDQGQRPLMVAADVYRPAAIDQLRTLGEQIGVDVFSLGDDVKPEEIAAAGLAKARE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D L++DTAGRL  ++ +M  + ++   ++      P  VL V+D+  GQ A      
Sbjct: 181 EGFDTLLVDTAGRLQIDTEMMEEMVRIRSAVE------PDEVLLVVDSMIGQEAAELTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHDKVGITGSVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|317055139|ref|YP_004103606.1| signal recognition particle protein [Ruminococcus albus 7]
 gi|315447408|gb|ADU20972.1| signal recognition particle protein [Ruminococcus albus 7]
          Length = 458

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S KL      +    +L +  V+E   E++  L+ +D+   V +  V  +  +  
Sbjct: 2   AFEGLSEKLGGVFKKLKGRGKLTEADVKEAMKEVKMALLEADVSYKVVKDFVANVTERSV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V+E + K++   +   N+  S  P VI++ G+ G GKTT   K
Sbjct: 62  GEDVLKSLTPAQQVIKIVNEELVKLMGEANSKINFP-SKPPCVIMMCGLQGSGKTTHAAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K     G + +L A D +R AAIDQLKI A++                +  E  KQA+
Sbjct: 121 LAKMFKRQGSRPLLIAADVYRPAAIDQLKIVAEKAQVPVFEMGQID-PRKIVKEGLKQAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++IIDTAGRLH +  LM  +  + ++ +      P  ++ V+DA  GQ+A++   
Sbjct: 180 DYGNDMVIIDTAGRLHIDEELMDELKDIKKIAE------PSEIMLVVDAMIGQDAVKVAS 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G   +I+TK+D   RGG  + ++     P+ F+G+GE +++ EPF  +  ++ I
Sbjct: 234 SFDEALGIDSVILTKLDSDTRGGAALSVLAVTGKPIKFVGMGEKLDEFEPFHPERMASRI 293

Query: 311 TGCLDY 316
            G  D 
Sbjct: 294 LGMGDM 299


>gi|297539516|ref|YP_003675285.1| signal recognition particle protein [Methylotenera sp. 301]
 gi|297258863|gb|ADI30708.1| signal recognition particle protein [Methylotenera sp. 301]
          Length = 454

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L+  I  +    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   LENLTDRLQGVIKTLRGQARLTEENISDAMREVRMALLEADVALPVVKEFIAQVKQRAQG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V + + +++   +   N      P +IL+ G+ G GKTT   KL
Sbjct: 62  QEVLQSLTPGQAVIQVVHDELTELMGKANVGLNLAAVA-PAIILMAGLQGSGKTTTSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K + +   KV+LA+ D +R AAI+QLK  A +   D   S        +A  A   A+ 
Sbjct: 121 AKLLKEQKKKVLLASADVYRPAAIEQLKTLAKQLDVDCFDSNATQKPLDIAAAALDFAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I DTAGRL  +  +MA I  +  +L       P   L V+DA  GQ+A+   + 
Sbjct: 181 GYYDVIIFDTAGRLGIDEAMMAEIKALHTLLN------PIETLFVVDAMQGQDAVNTAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG +RGG  + +      P+ F+GV E ++ LEPF  +  ++ I 
Sbjct: 235 FGDTLPLTGVILTKLDGDSRGGAALSVRHITGKPIKFVGVSEKVDGLEPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|284992394|ref|YP_003410948.1| signal recognition particle protein [Geodermatophilus obscurus DSM
           43160]
 gi|284065639|gb|ADB76577.1| signal recognition particle protein [Geodermatophilus obscurus DSM
           43160]
          Length = 528

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 151/307 (49%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +  + +    RL +   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FETLSDRLDKVFSGLRGKGRLTEADIDATAREIRIALLEADVALPVVRTFIAAVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVIKIVNEELVEILGGETRRLRY-AKQSPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G   +L A D  R  A++QL I A +   D    E G+   D   +A ++ + 
Sbjct: 121 GRWLKAQGHTPLLVAADLQRPNAVNQLSIVAGQAGVDVYAPEPGNGVGDPIRVAADSIEH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGRL  ++ LMA    +  V++      P   L V+DA  GQ+A+  
Sbjct: 181 ARRTMHDVVVVDTAGRLGIDAELMAQAAGIRDVVQ------PDETLFVVDAMIGQDAVTT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G +G+++TK+DG ARGG  + +      P+ F   GE + D + F  +  ++
Sbjct: 235 AEAFRDGVGFSGVVLTKLDGDARGGAALSVRYVTGQPIMFASTGEKLTDFDVFHPERMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|149019283|ref|ZP_01834645.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931153|gb|EDK82132.1| glucose-inhibited division protein B [Streptococcus pneumoniae
           SP23-BS72]
          Length = 523

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 141/307 (45%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+     +    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKSLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRLAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|148825617|ref|YP_001290370.1| Signal recognition particle protein [Haemophilus influenzae PittEE]
 gi|229847076|ref|ZP_04467182.1| Signal recognition particle protein [Haemophilus influenzae 7P49H1]
 gi|148715777|gb|ABQ97987.1| Signal recognition particle protein [Haemophilus influenzae PittEE]
 gi|229810160|gb|EEP45880.1| Signal recognition particle protein [Haemophilus influenzae 7P49H1]
 gi|309972762|gb|ADO95963.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Haemophilus
           influenzae R2846]
          Length = 459

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKAALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|261408031|ref|YP_003244272.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           Y412MC10]
 gi|261284494|gb|ACX66465.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           Y412MC10]
          Length = 333

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 125/320 (39%), Positives = 194/320 (60%), Gaps = 2/320 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVA 61
            + ++S++ +  ++   G   T     E ++D+ I  +++D+   EELE++LI +D+GV 
Sbjct: 8   KESISSKTENVTKQFRDGLEKTRKGFIEKVSDLVIRRKKIDEEFYEELEEILIGADVGVN 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               ++++L  +   + +     L  V SE +  +L   S     +      VIL VGVN
Sbjct: 68  TVMDLMDDLRAEVKKRRIEDAADLQPVLSEKLMGLLRDDSSNELRENPDGITVILFVGVN 127

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +    G KV+LAAGDTFR+ AI+QL++W +R   + +  + GSD AA
Sbjct: 128 GVGKTTTIGKLAHRYKQEGKKVLLAAGDTFRAGAIEQLEVWGERVGVEVIKQQPGSDPAA 187

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+ ++ DVL+ DTAGRL N + LM  + K+ RV++R  P APH VL VLDAT
Sbjct: 188 VMFDAVQAAKQRQADVLLCDTAGRLQNKTNLMEELNKIFRVIQREIPSAPHEVLMVLDAT 247

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q ++F   +G TGL++TK+DGTA+GG +I I     +PV  +G+GE + DL+ 
Sbjct: 248 TGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRQELNLPVKLVGLGEKMGDLQT 307

Query: 301 FVAKDFSAVITGCLDYGEEK 320
           F ++ F   +   L   EE 
Sbjct: 308 FDSEQFVHALFAGLIKEEEN 327


>gi|86157101|ref|YP_463886.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773612|gb|ABC80449.1| signal recognition particle-docking protein FtsY [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 444

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 123/304 (40%), Positives = 182/304 (59%), Gaps = 8/304 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + L  G   T       +  + +  ++ DD V  +LE++L  +DIGV  A +++E    K
Sbjct: 141 KTLAAGLEKTRGGFMARLNALFAGGKVVDDSVLADLEEVLFTADIGVKTATRLLESAREK 200

Query: 74  RYAKDVSVQRVLYD-VSELIHKML-----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
              K++S    L   + E I ++L        + P     + RP V++VVGVNG GKTT 
Sbjct: 201 VRRKELSDPERLKAALREEIARILDLAATGGAAAPLAVGEA-RPWVVMVVGVNGSGKTTT 259

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +GKL+ K+   G KV+L AGDTFR+AA +QL++WA+R SA  V  + G+D AA+ +EA +
Sbjct: 260 VGKLAAKLQGGGHKVLLGAGDTFRAAAGEQLEVWAERVSAPIVRGKEGADPAAVCFEAVQ 319

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +   + VDV++ DTAGRLH  + LM  + K+ RV+ +    APH VL VLDAT GQNA+ 
Sbjct: 320 RGAQEGVDVVLCDTAGRLHTKTPLMEELKKVQRVIGKAAAGAPHEVLLVLDATNGQNAIA 379

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   FH   G TG+ +TK+DGTA+GG +I I    +IPV ++GVGE + DL+PF  ++F 
Sbjct: 380 QARQFHEALGVTGIALTKLDGTAKGGVIIGICDELRIPVRYVGVGERVADLKPFSPREFV 439

Query: 308 AVIT 311
             + 
Sbjct: 440 EALF 443


>gi|259046637|ref|ZP_05737038.1| signal recognition particle-docking protein FtsY [Granulicatella
           adiacens ATCC 49175]
 gi|259036802|gb|EEW38057.1| signal recognition particle-docking protein FtsY [Granulicatella
           adiacens ATCC 49175]
          Length = 334

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 115/301 (38%), Positives = 173/301 (57%), Gaps = 10/301 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I K  KG   T     + + + ++  R +D+   E+LE+  I SD+G  +   I + L  
Sbjct: 29  IEKYDKGMEKTRRSFSDRLNEFLADFREIDEDFFEDLEETFISSDVGFEMTLAITDALRD 88

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS------HRPHVILVVGVNGVGKTT 126
           +   K+ +       V E+I + ++ + +    + S       RP V++ VGVNGVGKTT
Sbjct: 89  EVRLKNATTSGQ---VKEVIIEKMVDIYEKGEDNLSVLKKAEGRPTVLMFVGVNGVGKTT 145

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGK++ ++   G KV+LAAGDTFR+ AI QL++W +R     V  + G D +++ ++A 
Sbjct: 146 TIGKIAWRLKQEGNKVLLAAGDTFRAGAIQQLEVWGERVGVPVVAGKEGGDPSSVVFDAI 205

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K+A+ +  D L+IDTAGRL N   LM  + KM R++ R         L VLDATTGQNAL
Sbjct: 206 KKAKEENFDYLLIDTAGRLQNKVNLMKELEKMNRIISREIETGADETLLVLDATTGQNAL 265

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F      TGLI+TK+DGTA+GG ++ I     IPV F+G+GE ++DL+PF  + F
Sbjct: 266 VQAKQFGETIDITGLILTKLDGTAKGGVILSIRHELNIPVKFIGLGEQMDDLQPFEPEQF 325

Query: 307 S 307
            
Sbjct: 326 I 326


>gi|119897057|ref|YP_932270.1| signal recognition particle-docing protein FtsY [Azoarcus sp. BH72]
 gi|119669470|emb|CAL93383.1| probable signal recognition particle-docing protein FtsY [Azoarcus
           sp. BH72]
          Length = 377

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 125/303 (41%), Positives = 188/303 (62%), Gaps = 3/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LSW  +L  G A T  +L  G+ ++   R++D+ + EELE  L+ +D GV   Q +++E
Sbjct: 62  KLSWGERLKAGLARTRQQLGGGLANLFGRRKIDEDLLEELETTLLMADCGVDATQYLLDE 121

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +     +     L   +++ +HK++ PL +P +    H+P++I++ GVNG GKTT I
Sbjct: 122 LRLRWKRDRLETADQLQAALADALHKIIAPLEQPLDVS-GHKPYIIMIAGVNGSGKTTSI 180

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K     G  V+LAAGDTFR+AA +QL  W +R +   +  + G DAAA+ ++A   
Sbjct: 181 GKLAKYFQAQGKSVLLAAGDTFRAAAREQLMTWGERNNVTVIAQD-GGDAAAVIFDAINA 239

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +D+++ DTAGRL     LM  I K+ RV+ + D   PH V+ VLDA  GQNAL Q
Sbjct: 240 ARARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIAKADASGPHEVVLVLDANIGQNALAQ 299

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F A  G TGL++TK+DGTA+GG +  I      P+ F+GVGEGI+DL+PF A++F  
Sbjct: 300 VKAFDAAIGVTGLVVTKLDGTAKGGVVAAIARQCPKPLRFIGVGEGIDDLQPFKAREFID 359

Query: 309 VIT 311
            + 
Sbjct: 360 ALF 362


>gi|94990538|ref|YP_598638.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS10270]
 gi|94544046|gb|ABF34094.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS10270]
          Length = 522

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 149/310 (48%), Gaps = 17/310 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +T  F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  
Sbjct: 1   MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +    ++       Q++L  V+E +  +L   +   +      P +I++VG+ G GKTT 
Sbjct: 61  RAIGHEIIDTLDPTQQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGAGKTTF 119

Query: 128 IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GKL+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  
Sbjct: 120 AGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGL 179

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A 
Sbjct: 180 EQARENRNDYVLIDTAGRLQIDEKLMEELRDVKAL------AQPNEILLVVDSMIGQEAA 233

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     
Sbjct: 234 NVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRM 293

Query: 307 SAVITGCLDY 316
           S+ I G  D 
Sbjct: 294 SSRILGMGDL 303


>gi|325687450|gb|EGD29471.1| signal recognition particle protein [Streptococcus sanguinis SK72]
          Length = 524

 Score =  282 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTTILGSDTADI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LTNKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMQELSDVKALAN------PNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F++    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNSQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|329891229|ref|ZP_08269572.1| signal recognition particle-docking protein FtsY [Brevundimonas
           diminuta ATCC 11568]
 gi|328846530|gb|EGF96094.1| signal recognition particle-docking protein FtsY [Brevundimonas
           diminuta ATCC 11568]
          Length = 311

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 131/308 (42%), Positives = 194/308 (62%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +    W ++L++G + +S ++ + +        L +   E LE+ LI SD+G A + +IV
Sbjct: 4   TPKKGWFQRLSEGLSRSSKQMTDQVVSTFVKEPLSEEALERLEEHLIESDLGPAASARIV 63

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E     R+ K    + +   ++E +   L P    F+     +P+V+L VGVNG GKTT 
Sbjct: 64  ERFRELRFGKTSDEREIKQALAEAVAAELTPRQATFDPLSGPKPYVVLFVGVNGSGKTTT 123

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +GK++  ++  G KVM+ AGDTFR+AA +QLK+WADR  A F     G+DAA LA++AF 
Sbjct: 124 LGKIASDLTAKGAKVMIVAGDTFRAAAREQLKVWADRAGAHFESRRDGADAAGLAFDAFA 183

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+ +  DV++IDTAGRL N S LM  + K++RVLK++DP APH  L VLDAT G+NAL 
Sbjct: 184 KAKEEGFDVVLIDTAGRLQNKSTLMDELLKIVRVLKKVDPDAPHETLLVLDATVGRNALE 243

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q ++F   A  +G++MTK+DGTARGG L+P+      P+  +GVGEG+ DL+PF A+ FS
Sbjct: 244 QEKIFGRTAYVSGVVMTKLDGTARGGVLVPVAQASDAPIKLIGVGEGVEDLQPFDARAFS 303

Query: 308 AVITGCLD 315
             + G  D
Sbjct: 304 RSLVGLED 311


>gi|71903552|ref|YP_280355.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS6180]
 gi|71802647|gb|AAX72000.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS6180]
          Length = 522

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 149/310 (48%), Gaps = 17/310 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +T  F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  
Sbjct: 1   MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +    ++       Q++L  V+E +  +L   +   +      P +I++VG+ G GKTT 
Sbjct: 61  RAIGHEIIDTLDPTQQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGAGKTTF 119

Query: 128 IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GKL+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  
Sbjct: 120 AGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGL 179

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A 
Sbjct: 180 EQARENRNDYVLIDTAGRLQIDEKLMEELRDVKAL------AQPNEILLVVDSMIGQEAA 233

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     
Sbjct: 234 NVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRM 293

Query: 307 SAVITGCLDY 316
           S+ I G  D 
Sbjct: 294 SSRILGMGDL 303


>gi|257440277|ref|ZP_05616032.1| signal recognition particle protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257197311|gb|EEU95595.1| signal recognition particle protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 451

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 143/305 (46%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L      +    +L +   +    E+   L+ +D+   VA+    ++  +  
Sbjct: 2   AFESLTDRLAGVFKKLRGHGKLTEADIKAAMREVRMALLEADVNYKVAKDFCAKVSERAM 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E +  ++     P     +    +I++ G+ G GKTT   K
Sbjct: 62  GQEVMESLTPAQQVVKIVNEELVALMGGEEAPRLIVKNKGQTIIMLCGLQGNGKTTHAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K     G + ML A D +R AAIDQL++   +  A       G+    +A +A   A+
Sbjct: 122 LAKYFIKQGRRPMLVACDIYRPAAIDQLQVVGGQAGAPVFTL-PGAKPPEIARKALAHAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGRL  + +LM  + ++   +           L V+DA  GQ+A+   +
Sbjct: 181 DYGNDIVILDTAGRLQIDEVLMQELVQIKEAVP------VDETLLVVDAMAGQDAVNVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK DG  RGG  + ++     P+ F G GE ++DLE F     ++ I
Sbjct: 235 TFNETVGIDGIILTKTDGDTRGGAALSVLSVTGKPIKFQGTGEKLDDLEVFHPSRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|108798927|ref|YP_639124.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. MCS]
 gi|119868042|ref|YP_937994.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. KMS]
 gi|126434527|ref|YP_001070218.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. JLS]
 gi|108769346|gb|ABG08068.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. MCS]
 gi|119694131|gb|ABL91204.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. KMS]
 gi|126234327|gb|ABN97727.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. JLS]
          Length = 520

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 91/315 (28%), Positives = 147/315 (46%), Gaps = 27/315 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  + +  RL D   +    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALQGLRNKGRLTDADIDATAREIRLALLEADVSLPVVRAFVARIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++P  +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKIVNEELIGILGGETRPLVF-AKTPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK---- 187
           +K +   G   +L A D  R  A++QL+I  +R          G+   A   +       
Sbjct: 121 AKWLRGQGHTPLLVACDLQRPGAVNQLQIVGERAGVSVFAPHPGTAPGAPEVKGTADPVA 180

Query: 188 -------QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
                  +A+AK  DV+++DTAGRL  +  LM     +       D   P  VL VLDA 
Sbjct: 181 VAAAGLAEAKAKHFDVVVVDTAGRLGIDEELMNQAAAI------RDAVDPDEVLFVLDAM 234

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ+A+   E F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D + 
Sbjct: 235 IGQDAVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASSGEKLEDFDV 294

Query: 301 FVAKDFSAVITGCLD 315
           F     ++ I G  D
Sbjct: 295 FHPDRMASRILGMGD 309


>gi|167623030|ref|YP_001673324.1| signal recognition particle protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167353052|gb|ABZ75665.1| signal recognition particle protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 457

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNSVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   +   +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELENAMGEANEALDLS-AQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +       V++ + D +R AAI QL+  A      F  S++      +A  A   A+
Sbjct: 121 AKFLREREKKSVLVVSADVYRPAAIKQLETLAAEVEVQFFPSDVSQKPVDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I ++  V+       P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHVDEAMMDEIKELHAVIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LE F     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEAFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|85860175|ref|YP_462377.1| signal recognition particle GTPase [Syntrophus aciditrophicus SB]
 gi|85723266|gb|ABC78209.1| signal recognition particle GTPase [Syntrophus aciditrophicus SB]
          Length = 444

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 158/304 (51%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + KL+     +    RLD+       +E+   L+ +D+   V +  +EE+ ++   
Sbjct: 2   FENLAEKLEGVFKRLKGRGRLDEENIKEALKEIRMALLEADVNFKVVKDFIEEVRSRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+++  V + + ++L   S    +  S  P  I++VG+ G GKTT   KL
Sbjct: 62  QEVLESITPGQQIVKIVHDRLVELLGGTSSQLRFG-SRFPAPIMLVGLQGCGKTTTAVKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K ++  G +  L + D +R AA++QL++ A +  A    ++   D   +  +A ++A+ 
Sbjct: 121 AKVLAKGGKRAGLVSADVYRPAAMEQLRVMAQKIGAPAFNADSSQDPVKICVQAVEEAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +VLI+DTAGRL  ++ +M  + ++   +       P  +L V DA TGQ+A+     
Sbjct: 181 NGYEVLILDTAGRLAIDTQMMEELKQIKNAVN------PSEILFVADAMTGQDAVNVAAK 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ + G  G+IMTKMDG ARGG  + +      P+ ++G+GE I+ LE F  +  ++ I 
Sbjct: 235 FNELLGIDGVIMTKMDGDARGGAALSLKAVMGKPIKYVGIGEKIDALEVFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|315502425|ref|YP_004081312.1| signal recognition particle protein [Micromonospora sp. L5]
 gi|315409044|gb|ADU07161.1| signal recognition particle protein [Micromonospora sp. L5]
          Length = 517

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 147/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L    T +    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDTLSDRLSGIFTKLRGKGRLTDADIDATAREIRMALLEADVALPVVKGFIANVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L    +   +   H P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQIVKIVNEELINILGGEGRRLQF-AKHPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++ +   G + +L A D  R  A+ QL++   R   +      G+   D   +A ++ + 
Sbjct: 121 ARWLKSQGHQPLLVAADLQRPNAVGQLQVLGGRAGVEVYAPAPGNGVGDPVQVARDSIEH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    D++I+DTAGRL  ++ +M     +       D   P  V+ V+DA  GQ+A+R 
Sbjct: 181 ARRAARDIVIVDTAGRLGIDTEMMQQAANI------RDAVQPDEVIFVIDAMVGQDAVRT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G TG++++K+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGITGVVLSKLDGDARGGAALSVREVTGQPILFASTGEKLEDFDVFHPDRMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|281492192|ref|YP_003354172.1| signal recognition particle subunit Ffh [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375863|gb|ADA65357.1| Signal recognition particle, subunit Ffh [Lactococcus lactis subsp.
           lactis KF147]
          Length = 518

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L+    ++   +++ +     + +E+   L+ +D+ + V +K ++ +  +  
Sbjct: 2   AFENLTERLQNVFKNLRGKKKITETDVTEITKEIRVALLEADVALPVVKKFIKAIRERAV 61

Query: 76  AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +VS      Q+V+  V E +  +L              P +I++VG+ G GKTT  GK
Sbjct: 62  GVEVSEALNPAQQVIKIVDEELTAILGGGEAEL-LKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+KK+ +    + ++ A D +R AAIDQLK   ++                +      +A
Sbjct: 121 LAKKLKEEQNARPLMIAADVYRPAAIDQLKTLGEQLEIPVYDEGTAEKPVNIVRNGLLKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q ++ D ++IDTAGRL  +  LM  + ++  + +      P  +L V+DA TGQ A +  
Sbjct: 181 QEERKDYVLIDTAGRLEIDDTLMNELQEIKTLAE------PTEILLVVDAMTGQVAAQVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+I+TK+DG  RGG  + I      P+ F G GE + DLE F     S+ 
Sbjct: 235 KTFDEKLDITGVIITKLDGDTRGGAALSIREITGKPIKFTGTGEKLTDLEVFYPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|302865880|ref|YP_003834517.1| signal recognition particle protein [Micromonospora aurantiaca ATCC
           27029]
 gi|302568739|gb|ADL44941.1| signal recognition particle protein [Micromonospora aurantiaca ATCC
           27029]
          Length = 517

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 147/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L    T +    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDTLSDRLSGIFTKLRGKGRLTDADIDATAREIRMALLEADVALPVVKGFIANVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L    +   +   H P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQIVKIVNEELINILGGEGRRLQF-AKHPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++ +   G + +L A D  R  A+ QL++   R   +      G+   D   +A ++ + 
Sbjct: 121 ARWLKSQGHQPLLVAADLQRPNAVGQLQVLGGRAGVEVYAPAPGNGVGDPVQVARDSIEH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    D++I+DTAGRL  ++ +M     +       D   P  V+ V+DA  GQ+A+R 
Sbjct: 181 ARRAARDIVIVDTAGRLGIDTEMMQQAANI------RDAVQPDEVIFVIDAMVGQDAVRT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G TG++++K+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGITGVVLSKLDGDARGGAALSVREVTGQPILFASTGEKLEDFDVFHPDRMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|225440855|ref|XP_002276439.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 517

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 92/311 (29%), Positives = 154/311 (49%), Gaps = 15/311 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  +   KLK    ++++   + + +R+ +   L+ +D+ + V ++ V+ 
Sbjct: 27  RAEMFGQLTSGLEAAWTKLKG--EEVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVQA 83

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +     +       Q+++  V + + K++        +  S  P VIL+ G+ GVGK
Sbjct: 84  VSEQAVGVGLIRGVKPDQQLVKIVHDELVKLMGGEVSELVFAKSG-PTVILLAGLQGVGK 142

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TTV  KL+  +   G   ML AGD +R AAIDQL I  ++       +      + +A +
Sbjct: 143 TTVCAKLAFYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVDVPVYTAGTEVKPSQIAKQ 202

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++A+ K +DV+I+DTAGRL  +  +M  +  + R +       P  VL V+DA TGQ 
Sbjct: 203 GLEEARKKNIDVVIVDTAGRLQIDKAMMDELKDVKRAIN------PTEVLLVVDAMTGQE 256

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF   
Sbjct: 257 AAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPD 316

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 317 RMAGRILGMGD 327


>gi|28895953|ref|NP_802303.1| signal recognition particle [Streptococcus pyogenes SSI-1]
 gi|28811203|dbj|BAC64136.1| putative signal recognition particle [Streptococcus pyogenes SSI-1]
          Length = 522

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 82/310 (26%), Positives = 149/310 (48%), Gaps = 17/310 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +T  F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  
Sbjct: 1   MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +    ++       Q++L  V+E +  +L   +   +      P +I++VG+ G GKTT 
Sbjct: 61  RAIGHEIIDTLDPTQQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGTGKTTF 119

Query: 128 IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GKL+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  
Sbjct: 120 AGKLANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGL 179

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A 
Sbjct: 180 EQARENRNDYVLIDTAGRLQIDEKLMEELRDVKAL------AQPNEILLVVDSMIGQEAA 233

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     
Sbjct: 234 NVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRM 293

Query: 307 SAVITGCLDY 316
           S+ I G  D 
Sbjct: 294 SSRILGMGDL 303


>gi|313885165|ref|ZP_07818917.1| signal recognition particle-docking protein FtsY [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619856|gb|EFR31293.1| signal recognition particle-docking protein FtsY [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 337

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 176/307 (57%), Gaps = 4/307 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           ++ + +    + K  KG   +     + I D+ +  R LD+   E+LE+ LI +D+G  +
Sbjct: 19  KEESKQEEVVLEKYDKGMEKSRKNFSDRIADLFTGFRELDEEFYEDLEETLISADVGFNM 78

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGV 119
              + + +  +  +++V     +  V       +    +  N   +     P VIL VGV
Sbjct: 79  TIALTDAIRDEIESQNVYKGEDVKRVMIETMVKVYEDHEHENVSLNENPDGPTVILFVGV 138

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT +GK+  ++ ++G KV++AA DTFR+ A++QL +W  R     V      D A
Sbjct: 139 NGVGKTTSVGKIGYQLKESGKKVIMAAADTFRAGAVEQLSVWGQRLDIPVVTGIDQGDPA 198

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A K A+    D L++DTAGRL   + LM  + K+ R+++R +P+    VL VLDA
Sbjct: 199 SVVFDAVKAAKEGNYDYLLVDTAGRLQTKANLMQELAKIKRIIERENPNGVQEVLLVLDA 258

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q + F+     TGL++TK+DGTA+GG ++ I     IPV F+G+GEG NDL+
Sbjct: 259 TTGQNALIQAKQFNEATEITGLVLTKLDGTAKGGVILSIRYELDIPVKFIGLGEGANDLQ 318

Query: 300 PFVAKDF 306
           PF A+++
Sbjct: 319 PFNAEEY 325


>gi|220905067|ref|YP_002480379.1| signal recognition particle protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869366|gb|ACL49701.1| signal recognition particle protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 512

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L           +L +        E+   L+ +D+   V +  VE +  K   
Sbjct: 2   FESLSDRLSGVFRSFGGRGQLTEENVQAGLREVRLALLEADVNFKVVKDFVENVREKCLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + +  +L   +   +      P VI++VG+ G GKTT  GK+
Sbjct: 62  QEVLKGVSPAQQVVKIVHDELVGLLGGETAALDLQGRE-PAVIMLVGLQGSGKTTSAGKI 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +    ++  L   D +R AAIDQL + A +       S +  D   +A  A ++A+ 
Sbjct: 121 ANILRKQKMRPYLVPADVYRPAAIDQLTVLAKQLDMPCYPSTVDMDPVDIAKAALEEARR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++  VL++DTAGRLH +  LM  +  +   ++      P  +L V DA TGQ+A+   E 
Sbjct: 181 EQATVLLLDTAGRLHVDEPLMQELEAIKAAVQ------PQEILFVADAMTGQDAVTVAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+++TKMDG ARGG  + I      PV F+G+GE ++++E F     +  I 
Sbjct: 235 FNERLGVTGVVLTKMDGDARGGAALSIRAVTGAPVKFVGMGEKLSEMEVFHPDRIAGRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|298372769|ref|ZP_06982759.1| signal recognition particle-docking protein FtsY [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298275673|gb|EFI17224.1| signal recognition particle-docking protein FtsY [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 316

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 119/309 (38%), Positives = 177/309 (57%), Gaps = 9/309 (2%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S++ K     L  G   T   + + I+  IS + ++DD + + +E+ LI +D+GV    K
Sbjct: 5   SFLSKKDKEVLDNGLDKTKTSIFDKISRAISGKSKIDDEILDNIEEALISADVGVNTTIK 64

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHRPHVILVVGVNGV 122
           I+E L  +    K VS   +   +++ I  +L    +      +    P++ILVVGVNGV
Sbjct: 65  IIERLEKRIARDKYVSSDELHNIINQEIVALLSEQPQSGTSFENLPSNPYIILVVGVNGV 124

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ +   AG KV L A DTFR+AAIDQL IW  R     +  ++G+D A++ 
Sbjct: 125 GKTTTIGKLANRFKQAGKKVFLGAADTFRAAAIDQLMIWGQRVDVPVIKHKMGADPASVV 184

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++    A+A   +V+IIDTAGRLHN   LM  + K+  V+ ++ P     VL VLD +TG
Sbjct: 185 FDTLSSAKANNAEVVIIDTAGRLHNKVNLMNELTKIRNVVSKIFPDIKPEVLLVLDGSTG 244

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA  Q   F      T L +TK+DGTARGG +I I    +IPV ++G+GEGI+D++ F 
Sbjct: 245 QNAYEQARQFSQATNVTALAITKLDGTARGGVVIGISDQMQIPVKYIGLGEGIDDIQVFD 304

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 305 KEEFVKSLF 313


>gi|148242807|ref|YP_001227964.1| Signal recognition particle protein [Synechococcus sp. RCC307]
 gi|147851117|emb|CAK28611.1| Signal recognition particle protein [Synechococcus sp. RCC307]
          Length = 493

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +     +     D   +++   L+ +D+ + V +  + E+  K   
Sbjct: 6   FEELSQRFEDAVRGLKGEASISEGNVDSALKDVRRALLDADVSLPVVKSFIAEVREKALG 65

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+ +  V E + +++   + P        P V+L+ G+ G GKTT   KL
Sbjct: 66  ADVVRGVSPDQQFIKLVHEELVEVMGGANAPL-AKAEQSPTVVLMAGLQGAGKTTATAKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + + G + +L A DT+R AAIDQL+    +   +       +   A+A     + + 
Sbjct: 125 GLHLKEQGRRALLVAADTYRPAAIDQLQTLGQQIDVEVFSLGADAKPEAIAEAGLAKGRE 184

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D +I+DTAGRL  ++ +M  + ++   +      AP  VL V+D+  GQ A      
Sbjct: 185 EGFDTVIVDTAGRLQIDTSMMEEMVRIRSAV------APDEVLLVVDSMIGQEAADLTRS 238

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TKMDG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 239 FHEQVGITGAVLTKMDGDSRGGAALSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRIL 298

Query: 312 GCLD 315
           G  D
Sbjct: 299 GMGD 302


>gi|187476962|ref|YP_784986.1| signal recognition particle protein [Bordetella avium 197N]
 gi|115421548|emb|CAJ48057.1| signal recognition particle protein [Bordetella avium 197N]
          Length = 470

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 86/317 (27%), Positives = 149/317 (47%), Gaps = 28/317 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V +  V  +  K   
Sbjct: 2   LDNLTQRLSRVVKTLRGEARLTEANTQEMLREVRMALLEADVALPVVRDFVARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++     P + + S     P VIL+ G+ G GKTT  
Sbjct: 62  EEVASSLTPGQTLVGLVHKELTSLMGGDLGPGSGELSLAVQPPAVILMAGLQGAGKTTTT 121

Query: 129 GKLSKKM----------SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GKL++ +               KV++ + D +R AAI+QLK  A +   DF+ S+     
Sbjct: 122 GKLARWLSEGEHIQNGRKSGKKKVLVVSADVYRPAAIEQLKTVAAQVGVDFLPSDPSQKP 181

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A  A + A+    DVLI+DTAGRL  +  +M  I  +  ++K      P   L V+D
Sbjct: 182 EDIARNAVEHARRHHYDVLIVDTAGRLGIDEAMMREIAALHALVK------PVETLFVVD 235

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+     F      TG+++TK+DG ARGG  + +      P+ F+GV E ++ L
Sbjct: 236 AMQGQDAVNTARAFAEALPLTGVVLTKLDGDARGGAALSVRHITGKPLKFVGVSEKLDGL 295

Query: 299 EPFVAKDFSAVITGCLD 315
           +PF  +  +  + G  D
Sbjct: 296 QPFHPERMAQRVLGMGD 312


>gi|91215248|ref|ZP_01252220.1| signal recognition particle-docking protein FtsY [Psychroflexus
           torquis ATCC 700755]
 gi|91186853|gb|EAS73224.1| signal recognition particle-docking protein FtsY [Psychroflexus
           torquis ATCC 700755]
          Length = 319

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 120/313 (38%), Positives = 186/313 (59%), Gaps = 15/313 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           +S+ +K         L +G   +       ++  ++ + ++D+ V ++LE++L+ SD+G+
Sbjct: 1   MSFFKKIFSKEKKDKLDEGLKKSKSDFFGKLSKAVAGKSKVDESVLDDLEEILVSSDVGI 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVIL 115
               KI+  +  +    K +    +   + E I  +L        +      S +P+VI+
Sbjct: 61  TTTIKIINRIEARVAKNKYLGTDELNLILREEIAGLLSESENGELESLELPESKKPYVIM 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT IGKL+K     G KV+L AGDTFR+AA++QL+IWADR     V  ++G
Sbjct: 121 VVGVNGVGKTTTIGKLAKHYKLKGKKVVLGAGDTFRAAAVEQLQIWADRVGVPIVKQKMG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++A++  + A  +  D++I+DTAGRLHN   LM  + K+ RV++++ P+ P  VL 
Sbjct: 181 SDPASVAFDTVQSAIKQNADIVILDTAGRLHNKVNLMNELIKIKRVMQKVIPNIPDEVLL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    KIPV ++GVGEGI
Sbjct: 241 VLDGSTGQNAFEQAKQFTAATQVTALAITKLDGTAKGGVVIGISDQFKIPVKYIGVGEGI 300

Query: 296 NDLEPFVAKDFSA 308
           +DL+ F   +F  
Sbjct: 301 DDLQIFNKYEFVD 313


>gi|189346909|ref|YP_001943438.1| signal recognition particle protein [Chlorobium limicola DSM 245]
 gi|189341056|gb|ACD90459.1| signal recognition particle protein [Chlorobium limicola DSM 245]
          Length = 449

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 152/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     +     +++        +++  L+ +D+   VA+K+VE++  K   
Sbjct: 2   FDSLSDKLELTFKKLAGQATINEINIGIAMRDIKRALLSADVNYKVAKKLVEDIREKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V++ + +++   +KP N      P +I+V G+ G GKTT   KL
Sbjct: 62  EEVIKSVSPAQMIVKIVNDELTELMGGENKPLNLSPKKLPAIIMVAGLQGSGKTTFCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++++   G   +L A D +R AAIDQLK   ++        E      A+  +  + A+A
Sbjct: 122 ARRLKKNGKNPLLVAADVYRPAAIDQLKTLGEQVEVPVFSIEEPDAMKAV-MQGLEAARA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLI+DTAGRL  +  +MA    +   LK      P  +L V+D+  GQ A+     
Sbjct: 181 GAKDVLIVDTAGRLQIDEKMMAEAEAIKNALK------PDELLFVVDSMMGQEAVNTARE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG ARGG  + I    + P+ F+ +GE ++DL+ F  +  +  I 
Sbjct: 235 FNERLDFDGVVLTKLDGDARGGAALSIRQVVEKPIKFISIGEKVDDLDLFYPERMAQRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|315282799|ref|ZP_07871124.1| signal recognition particle protein [Listeria marthii FSL S4-120]
 gi|313613554|gb|EFR87373.1| signal recognition particle protein [Listeria marthii FSL S4-120]
          Length = 450

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 145/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GADVMKSLTPGQQVIKIVQEELTSLMGGEESKIGT-ADRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P  +L V+D+ TGQ+A+   
Sbjct: 181 KEEHLDYVIIDTAGRLHIDETLMDELKQVKEIAK------PTEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+  GE +  LE F     ++ 
Sbjct: 235 QSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|225419757|ref|ZP_03762060.1| hypothetical protein CLOSTASPAR_06095 [Clostridium asparagiforme
           DSM 15981]
 gi|225041594|gb|EEG51840.1| hypothetical protein CLOSTASPAR_06095 [Clostridium asparagiforme
           DSM 15981]
          Length = 459

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 149/306 (48%), Gaps = 16/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+     + S  +L +       +E++  L+ +D+   V ++ +  +  +  
Sbjct: 2   AFESLTDKLQNVFKGLRSKGKLSEAEVKAALKEVKMALLEADVSFKVVKQFINSIQDQAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V     + Q V+  V+E + K++   +   +    +   VI++ G+ G GKTT   K
Sbjct: 62  GAEVFGKLDAGQTVIKIVNEELVKLMGSETTEVDLKPGNEITVIMMTGLQGAGKTTTTAK 121

Query: 131 LSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++    G K +L A D +R AAI QL+I  ++                +A  A + A
Sbjct: 122 LAAQLKAKKGRKPLLVACDVYRPAAIKQLQINGEKVGVPVFAMGDKHKPVDIAKAAMEHA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
               ++++I+DTAGRLH +  +M  + ++       D    H  + V+DA TGQ+A+   
Sbjct: 182 AKNGMNLVILDTAGRLHIDEAMMDELVEIK------DQLDVHQTILVVDAMTGQDAVNVS 235

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+   G  G+++TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ 
Sbjct: 236 ETFNNKIGIDGVVLTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASR 295

Query: 310 ITGCLD 315
           I G  D
Sbjct: 296 ILGMGD 301


>gi|148270357|ref|YP_001244817.1| signal recognition particle protein [Thermotoga petrophila RKU-1]
 gi|147735901|gb|ABQ47241.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermotoga
           petrophila RKU-1]
          Length = 433

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 154/304 (50%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL     ++    ++ +  V++ + ++   L+ +D+   V ++ V+ +L K   
Sbjct: 2   FENLQEKLSRVFKNLSGRGKITEKNVKDAIREVKLSLLEADVNYKVVKEFVDHVLQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V + + +++   ++P      HRP  I++VG+ G GKTT   KL
Sbjct: 62  EEVLRSLTPDQQFIKIVRDELVRIMGEKNEPLRL--VHRPAPIMMVGLQGSGKTTTCAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G   +L A D +R AA+DQL    ++   + V  +       +  EA   A++
Sbjct: 120 AKLLKKEGRNPLLVAADLYRPAAVDQLVKLGNQIGINVV-HDYNKTPVEIVKEAVDVAES 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D+LI+DTAGRLH +  +M  + ++ ++L       P  +L V+DA  GQ+A+   ++
Sbjct: 179 TGKDILIVDTAGRLHIDEEMMKELEEIKKILN------PDEILLVVDAMMGQDAVNTAKV 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG ++TKMDG ARGG ++ I      PV F+G  E I+ LEPF     +  I 
Sbjct: 233 FDERLDLTGFVVTKMDGDARGGVILSIKYVTGKPVKFIGTSEKIDGLEPFHPDRIANRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|254469043|ref|ZP_05082449.1| signal recognition particle-docking protein FtsY [beta
           proteobacterium KB13]
 gi|207087853|gb|EDZ65136.1| signal recognition particle-docking protein FtsY [beta
           proteobacterium KB13]
          Length = 384

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 120/305 (39%), Positives = 188/305 (61%), Gaps = 3/305 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
            E LS+  K+ +G   T   +   ++ +  ++ +D    +ELE  LI +D+G A  Q+I+
Sbjct: 81  DEKLSFSEKIKQGLKKTRDAISGNLSALSFTKNIDQEFYDELEMTLIAADVGYAATQQII 140

Query: 68  EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            EL  +   + +     L  +  +++ ++L  + KP        P VILVVGVNG GKTT
Sbjct: 141 SELKDRVKKEKLEDGAQLKSLLKKILSELLQHIEKPL-IHIETTPFVILVVGVNGAGKTT 199

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K + D G  V++AAGDTFR+AA +QL++W DR +   + S+   D +A+ ++A 
Sbjct: 200 TIGKLTKLLLDEGKSVLIAAGDTFRAAAKEQLQVWGDRNNVTVI-SQDTGDPSAVIFDAM 258

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+AK +D++I DTAGRL     L+  + K+ +V+K+ D  APH  + VLDA TGQNA+
Sbjct: 259 QSAKAKAIDIVIADTAGRLPTQKHLIDELAKIKKVIKKFDETAPHETILVLDANTGQNAI 318

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q+++F+     TGLIMTK+DGTA+GG +  I     IP+ F+GVGE I+DL+ F A+D+
Sbjct: 319 NQIKVFNEAVSLTGLIMTKLDGTAKGGIVAAIAKEQPIPLRFIGVGEKIDDLKIFSAEDY 378

Query: 307 SAVIT 311
           +  + 
Sbjct: 379 AEGML 383


>gi|288553092|ref|YP_003425027.1| signal recognition particle-docking protein FtsY [Bacillus
           pseudofirmus OF4]
 gi|288544252|gb|ADC48135.1| signal recognition particle-docking protein FtsY [Bacillus
           pseudofirmus OF4]
          Length = 333

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 190/308 (61%), Gaps = 3/308 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+ +++     K   G   T       + +++   R++D+   EELED+LI +D+GV 
Sbjct: 8   KEKLTTQTTEVTDKFKTGLEKTRDSFATKMNELVYRYRKVDEEFFEELEDILIGADVGVN 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF-SHRPHVILVVGV 119
               ++++L  +   +++   + +  V SE + ++L    +    +  +    VILVVGV
Sbjct: 68  TVMTLIDDLKDEVRIRNIKDTKDIQPVISEKLAELLQKEEEDAALNIQTDGMTVILVVGV 127

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+  +   G  VMLAAGDTFR+ AI+QL++W +R   D +  + GSD A
Sbjct: 128 NGVGKTTTIGKLANHLKQDGKSVMLAAGDTFRAGAIEQLEVWGERVGVDVIKQQEGSDPA 187

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A + A+++ VDVLI DTAGRL N   LM  + K+ RV++R  P APH VL VLDA
Sbjct: 188 AVMYDALQAAKSRGVDVLICDTAGRLQNKVNLMNELEKVKRVIEREVPSAPHEVLLVLDA 247

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F      +G+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL+
Sbjct: 248 TTGQNAMSQAKTFGKSTDVSGIVLTKLDGTAKGGIVLAIRHELDIPVKFVGLGEKVDDLQ 307

Query: 300 PFVAKDFS 307
           PF A+ F 
Sbjct: 308 PFNAEQFV 315


>gi|194333840|ref|YP_002015700.1| signal recognition particle protein [Prosthecochloris aestuarii DSM
           271]
 gi|194311658|gb|ACF46053.1| signal recognition particle protein [Prosthecochloris aestuarii DSM
           271]
          Length = 449

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+     +     +++        +++  L+ +D+   V +K VE++  K   
Sbjct: 2   FDNLSDKLEATFKKLAGQATINEVNIGIAMRDIKRALLGADVNYKVTKKFVEDVREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  VS+ + +++   +KP N   +  P VI+V G+ G GKTT   KL
Sbjct: 62  EQVVKSVSPAQMIVKIVSDELTELMGGENKPLNLATNKLPAVIMVAGLQGSGKTTFCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K++   G   +L A D +R AAI QLK   D+        +   DA   A +   +A+ 
Sbjct: 122 AKRLKKNGKHPLLVAADVYRPAAIAQLKTMGDQVDVPVFSIDA-QDALKAALDGVDEARK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  +  +MA    + + L       P  +L V+DA  GQ A+   ++
Sbjct: 181 IGCDVVIVDTAGRLQVDEGMMAEAESLKKQLS------PDEILFVVDAMIGQEAVNTAKV 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG ARGG  + I      P+ F+ VGE ++DL+ F     +  I 
Sbjct: 235 FNERLDFDGVVLTKLDGDARGGAALSIKHVVDKPIKFMSVGEKVDDLDLFYPDRMAQRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|30263848|ref|NP_846225.1| signal recognition particle protein [Bacillus anthracis str. Ames]
 gi|47529273|ref|YP_020622.1| signal recognition particle protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186695|ref|YP_029947.1| signal recognition particle protein [Bacillus anthracis str.
           Sterne]
 gi|227813247|ref|YP_002813256.1| signal recognition particle protein [Bacillus anthracis str. CDC
           684]
 gi|229602210|ref|YP_002868082.1| signal recognition particle protein [Bacillus anthracis str. A0248]
 gi|254683447|ref|ZP_05147307.1| signal recognition particle protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721376|ref|ZP_05183165.1| signal recognition particle protein [Bacillus anthracis str. A1055]
 gi|254735883|ref|ZP_05193589.1| signal recognition particle protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254739516|ref|ZP_05197213.1| signal recognition particle protein [Bacillus anthracis str. Kruger
           B]
 gi|254751176|ref|ZP_05203215.1| signal recognition particle protein [Bacillus anthracis str.
           Vollum]
 gi|254756724|ref|ZP_05208753.1| signal recognition particle protein [Bacillus anthracis str.
           Australia 94]
 gi|30258492|gb|AAP27711.1| signal recognition particle protein [Bacillus anthracis str. Ames]
 gi|47504421|gb|AAT33097.1| signal recognition particle protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180622|gb|AAT55998.1| signal recognition particle protein [Bacillus anthracis str.
           Sterne]
 gi|227003495|gb|ACP13238.1| signal recognition particle protein [Bacillus anthracis str. CDC
           684]
 gi|229266618|gb|ACQ48255.1| signal recognition particle protein [Bacillus anthracis str. A0248]
          Length = 449

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 145/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTELMGGEQSKIAI-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAG LH +  LM  + K+  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGHLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ LE F  +  ++ 
Sbjct: 235 QSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDALEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|331701481|ref|YP_004398440.1| signal recognition particle protein [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128824|gb|AEB73377.1| signal recognition particle protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 479

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  +  +    ++          E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLTERLQNAMKTLRGKGKVSQSDLRATMREIRLALLEADVNFQVVRDFVKTVEERAN 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              V       Q+++  V E + K +   + P N      P +I++ G+ G GKTT  GK
Sbjct: 62  GAKVLEGLNPSQQIVKIVDEELTKTMGEEAVPLN-KAEKIPTIIMMSGLQGAGKTTTAGK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+ +    + +L A D +R AAIDQL+    +            D   +A    +QA
Sbjct: 121 LALKLKNEQNARPLLIADDIYRPAAIDQLQTVGQQIDVPVFSLGTDVDPVEIAKRGVEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +IIDTAGRL  +  LM  +  +       D   P+ +L V+DA TGQNA+   
Sbjct: 181 KQDHNDYVIIDTAGRLQIDEKLMDELSHIK------DAVEPNEILLVIDAMTGQNAVATA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I    + P+ F+G GE ++DL+ F     ++ 
Sbjct: 235 EGFNKTLDVTGVVLTKLDGDTRGGAALSIRAVTQKPIKFVGQGEKMSDLDVFYPDRMASR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|149371256|ref|ZP_01890742.1| signal recognition particle-docking protein FtsY [unidentified
           eubacterium SCB49]
 gi|149355394|gb|EDM43953.1| signal recognition particle-docking protein FtsY [unidentified
           eubacterium SCB49]
          Length = 318

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 126/314 (40%), Positives = 186/314 (59%), Gaps = 16/314 (5%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           +S+ +K         L KG   +       +   ++ + ++D  V ++LE++L+ SD+GV
Sbjct: 1   MSFFKKIFNKEKKETLDKGLEKSKSSFFSKLNKAVAGKSKVDASVLDDLEEVLVSSDVGV 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-----PHVI 114
               K+++ +  +    K V    +   + E I  +L  +       F+       PHVI
Sbjct: 61  TTTLKVIDRIEARVAKDKYVGTSELNAILREEIAGLLSEIDSGNESQFTIPKHETGPHVI 120

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +VVGVNG GKTT IGKL+ + S AG KV+L A DTFR+AAIDQL++WADRT+   V   +
Sbjct: 121 MVVGVNGAGKTTTIGKLAHQFSKAGHKVVLGAADTFRAAAIDQLQVWADRTNVPIVKQAM 180

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD A++A++  +    +  DV+IIDTAGRLHN   LM  + K+ RV++++ P APH VL
Sbjct: 181 GSDPASVAFDTLESGVKQNADVIIIDTAGRLHNKINLMNELTKVKRVMQKVIPDAPHDVL 240

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLD +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEG
Sbjct: 241 LVLDGSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEG 300

Query: 295 INDLEPFVAKDFSA 308
           I+DL+ F   +F  
Sbjct: 301 IDDLQVFNKFEFVD 314


>gi|146318530|ref|YP_001198242.1| Signal recognition particle GTPase [Streptococcus suis 05ZYH33]
 gi|146320726|ref|YP_001200437.1| Signal recognition particle GTPase [Streptococcus suis 98HAH33]
 gi|253751657|ref|YP_003024798.1| signal recognition particle protein [Streptococcus suis SC84]
 gi|253753559|ref|YP_003026700.1| signal recognition particle protein [Streptococcus suis P1/7]
 gi|145689336|gb|ABP89842.1| Signal recognition particle GTPase [Streptococcus suis 05ZYH33]
 gi|145691532|gb|ABP92037.1| Signal recognition particle GTPase [Streptococcus suis 98HAH33]
 gi|251815946|emb|CAZ51560.1| signal recognition particle protein [Streptococcus suis SC84]
 gi|251819805|emb|CAR45741.1| signal recognition particle protein [Streptococcus suis P1/7]
 gi|292558300|gb|ADE31301.1| Signal recognition particle protein [Streptococcus suis GZ1]
 gi|319758083|gb|ADV70025.1| Signal recognition particle GTPase [Streptococcus suis JS14]
          Length = 512

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 140/307 (45%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDIQEATKEIRLALLEADVALPVVKDFIKKVRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++ G+ G GKTT  GK
Sbjct: 62  GHEVIETLNPAQQIIKIVDEELTAVLGSETSEI-IKSPKIPTIIMMAGLQGAGKTTFTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + +L A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKQEENARPLLIAADIYRPAAIDQLKTLGQQIDVPVFELGNQVPALEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  + ++           P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDQALMTELREIKEF------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNDQLAITGVILTKIDGDTRGGAALSVRHITGQPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|304316936|ref|YP_003852081.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778438|gb|ADL68997.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 319

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 128/307 (41%), Positives = 190/307 (61%), Gaps = 5/307 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQK 65
             +     +KL  G   T       I  I+S  R++DD + EELE++LI +D+GV   +K
Sbjct: 15  EKDKKGLYQKLKDGLTRTRNNFTAKIDGILSLGRKIDDELFEELEEILILADVGVITTEK 74

Query: 66  IVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I++ +  K   + +     + D+ +E I+ ++    KPFN      P +IL+VGVNGVGK
Sbjct: 75  IIDNIKIKAKEQKIKEADKIKDLLAEEIYNIMDANEKPFNI---TSPAMILIVGVNGVGK 131

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K  + G KV+L A DTFR+AAIDQL++WA R + + +  E GSD A++ ++
Sbjct: 132 TTTIGKLANKYKNEGKKVLLVAADTFRAAAIDQLEVWASRNNCEIIRHEEGSDPASVVFD 191

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             K A+A+  D+++ DTAGRLHN   LM  + K+ RV +R   ++    L VLDATTGQN
Sbjct: 192 GIKAAKARGADIILCDTAGRLHNKKNLMEELKKIYRVAQREFDNSNIETLLVLDATTGQN 251

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A++Q ++F      TG+I+TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F ++
Sbjct: 252 AVQQAKIFKEAVNVTGIILTKLDGTAKGGIVISIKSELDIPVRFIGVGEGIDDLQEFDSE 311

Query: 305 DFSAVIT 311
            F   + 
Sbjct: 312 KFVRALF 318


>gi|312127973|ref|YP_003992847.1| signal recognition particle protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777992|gb|ADQ07478.1| signal recognition particle protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 443

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S S KL++    +    +L +       +E++  L+ +D+   V +  +  +  K   
Sbjct: 2   FSSLSEKLQDVFKRLRGKGKLTEKDIKDAMKEVKLALLEADVNYKVVKDFINTVTQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + + ++L        +  S    + ++VG+ G GKTT  GKL
Sbjct: 62  EEVLESLTPAQQVIKIVYDEMVRLLGGSDTKLTFSPSGF-SIYMMVGLQGSGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL++ A +            DA  +A E  + A+A
Sbjct: 121 AGLLKKQGKNPLLVACDIYRPAAIKQLEVVAQKVGVKCFADYNSKDAVKIAKEGIEFAKA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            + DV I+DTAGRLH N  LM  +  +   +K      P  +L VLDA TGQ+A+     
Sbjct: 181 SRCDVAIVDTAGRLHINQELMDELVSIKNAIK------PTEILLVLDAMTGQDAVNVATA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+IMTK+DG  RGG  + +      P+ F GVGE + DLE F     ++ I 
Sbjct: 235 FNEQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVGEKMEDLEAFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|299771374|ref|YP_003733400.1| signal recognition particle protein [Acinetobacter sp. DR1]
 gi|298701462|gb|ADI92027.1| signal recognition particle protein [Acinetobacter sp. DR1]
          Length = 471

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ-----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V  Q       +  V + + KM+   ++  +   +  P V+L+ G+ G GKTT   KL
Sbjct: 62  QEVMTQLSPGQAFVKIVYDELTKMMGEANETLDLS-AKPPVVVLLAGLQGAGKTTTAAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KVM  + D +R AAI QL+  +    A F+ S+       +   A +QA+
Sbjct: 121 ARFLKERQKKKVMTVSADVYRPAAIKQLETVSAEVGAGFIASDASEKPIDIVNRAIEQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 IQFADVLIVDTAGRLHVDEDMMDEIKELHAAVK------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF     +  I
Sbjct: 235 AFNDALALTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPDRVAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|56964059|ref|YP_175790.1| signal recognition particle GTPase [Bacillus clausii KSM-K16]
 gi|56910302|dbj|BAD64829.1| signal recognition particle GTPase [Bacillus clausii KSM-K16]
          Length = 452

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +T I    ++ +     +  E+   L+ +D+   V ++ +  +  K  
Sbjct: 2   AFEGLAARLQDTLTKIRGKGKVSEQDIKEMMREVRLALLEADVNFKVVKQFIANVKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E +  ++              P V+++VG+ G GKTT   K
Sbjct: 62  GQEVMKSLTPGQQVIKVVNEELTALMGAEQSKIAV-AQKPPTVVMMVGLQGAGKTTTTAK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    + +         ++   +A EA   A
Sbjct: 121 LANHLRKKHNRKPLLVACDVYRPAAIQQLETLGKQLNMPVFSKGTDANPVDIAKEAVAAA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D ++IDTAGRLH +  LMA +  M   +       P  +L V+D+ TGQ+A+   
Sbjct: 181 KAEHHDYVLIDTAGRLHVDETLMAELQDMKAAVT------PDEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG ++TK+DG  RGG  I I      P+ F G+GE I+ LEPF     ++ 
Sbjct: 235 ESFNNQLDVTGAVLTKLDGDTRGGAAISIKAVTNTPIKFAGMGEKIDQLEPFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|293391030|ref|ZP_06635364.1| signal recognition particle protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951564|gb|EFE01683.1| signal recognition particle protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 459

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FENLSDRLSKTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVNKSLTPGQEFVKIVQAELETAMGEANESLNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A   +ADF  S++  +   +A  A  +A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQAVNADFFPSDVKQNPVEIAKAALAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDGEMMDEIKQVHAALN------PVETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|300783873|ref|YP_003764164.1| signal recognition particle, subunit SRP54 [Amycolatopsis
           mediterranei U32]
 gi|299793387|gb|ADJ43762.1| signal recognition particle, subunit SRP54 [Amycolatopsis
           mediterranei U32]
          Length = 512

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +    +L D   +    E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FDTLSDRLTAALQTLTRKGKLSDADIDATAREIRIALLEADVALGVVKTFIAKIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++  N      P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVIKIVNEELVGILGGETRRLNL-AKTPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +  +   G   ML A D  R  A+ QL++  +R        E G+   D   +A  A  +
Sbjct: 121 ALWLKKQGHTPMLVACDLQRPNAVTQLQVVGERAGVVTFAPEPGNGVGDPVDVARRAIAE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+  + DV+++DTAGRL  +  LM     +       D   P  VL V+DA  GQ+A+  
Sbjct: 181 AKHAQHDVVVVDTAGRLGVDEELMKQAADI------RDAVEPDEVLFVVDAMIGQDAVTT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G +G+++TK+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 AQAFQDGVGFSGVVLTKLDGDARGGAALSVREVTGQPILFASNGEKLEDFDTFHPDRMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|261867191|ref|YP_003255113.1| signal recognition particle protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412523|gb|ACX81894.1| signal recognition particle protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 459

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FENLSDRLSKTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFINKVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVNKSLTPGQEFVKIVQAELEAAMGEANESLNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A   +ADF  S++  +   +A  A  +A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQAVNADFFPSDVKQNPVEIAKAALAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDGEMMDEIKQVHAALN------PVETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|294500961|ref|YP_003564661.1| signal recognition particle protein [Bacillus megaterium QM B1551]
 gi|295706307|ref|YP_003599382.1| signal recognition particle protein [Bacillus megaterium DSM 319]
 gi|294350898|gb|ADE71227.1| signal recognition particle protein [Bacillus megaterium QM B1551]
 gi|294803966|gb|ADF41032.1| signal recognition particle protein [Bacillus megaterium DSM 319]
          Length = 447

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  +  +    ++++     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQSTLQKLKGKGKVNEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVLKSLTPGQQVIKVVQEELTALMGGEQSKIAV-APKAPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +        +L A D +R AAI QL+    + S              +A +A   A
Sbjct: 121 LANLLRKKYNRNPLLVAADIYRPAAIKQLETLGKQLSMSVFSLGDQVSPVEIAKQAIAHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D ++IDTAGRLH +  LM  + ++  +        P  +  V+DA TGQ+A+   
Sbjct: 181 KEEHHDYVLIDTAGRLHVDENLMEELEQIKELSN------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F+G+GE ++ +E F  +  ++ 
Sbjct: 235 DSFNKQLGLTGVVLTKLDGDTRGGAALSIRAVTDTPIKFVGLGEKMDAIEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|255026961|ref|ZP_05298947.1| hypothetical protein LmonocytFSL_12638 [Listeria monocytogenes FSL
           J2-003]
          Length = 450

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++++  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GADVMKSLTPGQQVIKIVQEELTSLMGGEESKIGT-ADRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  +        P  +L V+D+ TGQ+A+   
Sbjct: 181 KEEHLDYVIIDTAGRLHIDETLMDELKQVKEIAT------PTEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+  GE +  LE F     ++ 
Sbjct: 235 QSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|33599932|ref|NP_887492.1| cell division protein [Bordetella bronchiseptica RB50]
 gi|33567529|emb|CAE31442.1| cell division protein [Bordetella bronchiseptica RB50]
          Length = 355

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 180/307 (58%), Gaps = 11/307 (3%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SW+ +L +G + T   +      +    ++D+ + EELE  LI +D G+   +K++  
Sbjct: 53  KASWLSRLKQGLSRTGQNIGG----LFVGVKVDENLFEELESALIMADAGIEATEKLLAA 108

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   + +     +   + +L+   L PL + F+   +  P V+++ GVNG GKTT I
Sbjct: 109 LRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRAQ-PLVVMIAGVNGAGKTTSI 167

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G  V+LAAGDTFR+AA +QL  W  R +   + S+ G D AA+A+++   
Sbjct: 168 GKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVI-SQDGGDPAAVAFDSVNA 226

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+ V V+++DTAGRL     LM  + K+ RV+ + +  APH VL V+D  TGQNAL Q
Sbjct: 227 GRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQ 286

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAK 304
           +  F A    TGL++TK+DGTA+GG L  +    +    IPVY++GVGEG+ DL+PFVA 
Sbjct: 287 IRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVAD 346

Query: 305 DFSAVIT 311
           +F+A + 
Sbjct: 347 EFAAALL 353


>gi|296135007|ref|YP_003642249.1| signal recognition particle protein [Thiomonas intermedia K12]
 gi|295795129|gb|ADG29919.1| signal recognition particle protein [Thiomonas intermedia K12]
          Length = 449

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    R+ +     +  E+   L+ +D+ + V ++    +  K   
Sbjct: 2   LNNLTQRLSRVVKTLKGEARITESNIQDMLREVRLALLEADVALPVVREFTARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V   +  ++   + P N   +  P ++L+ G+ G GKTT   KL
Sbjct: 62  QEVVGSLTPGQALVGVVQRELADLMGGDAVPINL-ATQPPAIVLMAGLQGAGKTTTTAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KV+  + D +R AAI QL+    +  A+F  S        +A  A + A+
Sbjct: 121 ARLLTERQKKKVLTVSCDVYRPAAIAQLQTVTAQAGAEFFPSSPDDKPLDIARRAVEFAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   DVL++DTAGRL  +  +M  I ++   LK      P   L V+DA  GQ+A+    
Sbjct: 181 SHHFDVLLVDTAGRLSVDEAMMREIKELHAALK------PIETLFVVDAMQGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+++TK+DG ARGG  + +      P+ F GV E I+ LEPF  +  +  I
Sbjct: 235 AFHDTLPLTGIVLTKLDGDARGGAALSVRQVTGAPIKFAGVSEKIDGLEPFDPRRMADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|145593852|ref|YP_001158149.1| signal recognition particle protein [Salinispora tropica CNB-440]
 gi|145303189|gb|ABP53771.1| signal recognition particle subunit FFH/SRP54 (srp54) [Salinispora
           tropica CNB-440]
          Length = 514

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L    T +    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDTLSDRLSGIFTKLRGKGRLTDADIDATAREIRLALLEADVALPVVKGFIARVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++         P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQIVKIVNEELVNVLGGEARRLQL-AKQPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +  +   G + +L A D  R  A+ QL++   R   +    E G+   D   +A  + + 
Sbjct: 121 ASWLRGQGHQPLLVAADLQRPNAVGQLQVLGGRAGVEVYSPEPGNGVGDPVQVARASIEH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    D++I+DTAGRL  ++ +M     +       D   P  V+ V+DA  GQ+A+R 
Sbjct: 181 ARRAARDIVIVDTAGRLGIDAEMMQQAADI------RDAVNPDEVIFVIDAMVGQDAVRT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G TG++++K+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGITGVVLSKLDGDARGGAALSVREVTGQPILFASTGEKLEDFDVFHPDRMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|139473726|ref|YP_001128442.1| signal recognition particle protein [Streptococcus pyogenes str.
           Manfredo]
 gi|134271973|emb|CAM30211.1| signal recognition particle protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 520

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 148/307 (48%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q++L  V+E +  +L   +   +      P +I++VG+ G GKTT +GK
Sbjct: 62  GHEIINTLDPTQQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGAGKTTFVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENRNDYVLIDTAGRLQIDEKLMEELRDVKAL------AQPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     S+ 
Sbjct: 235 YEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|315222974|ref|ZP_07864853.1| signal recognition particle protein [Streptococcus anginosus F0211]
 gi|315187924|gb|EFU21660.1| signal recognition particle protein [Streptococcus anginosus F0211]
          Length = 516

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 141/307 (45%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E    L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRRKGKISESDVQEATKETRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+    G + ++ A D +R AAIDQL     +             A  +  +  +QA
Sbjct: 121 LANKLKKEEGARPLMIAADIYRPAAIDQLTTLGQQIDVPVFSLGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   D ++IDTAGRL  +  LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 KANHNDYVLIDTAGRLQIDEKLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|238852592|ref|ZP_04643002.1| signal recognition particle protein [Lactobacillus gasseri 202-4]
 gi|238834738|gb|EEQ26965.1| signal recognition particle protein [Lactobacillus gasseri 202-4]
          Length = 476

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 151/307 (49%), Gaps = 18/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L++ + ++    ++ +        E+   L+ +D+   V +  ++++  +  
Sbjct: 2   AFENLSERLQKALKNLTGKGKISEADINDASREIRLALLEADVNFKVVKDFIKKIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V + + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVDDELTKMMGEEAVSLNKS-QHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAIDQLK    + +     SE   + A +     ++A
Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIDQLKQIGQQLNVPVY-SEDNQNVAEIVKHGLEEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM     + RV     P    + L V+DA TGQ A +  
Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDE---LKRVTAVAHP---DNTLLVVDAMTGQAATQVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+I+TK+DG  RGG  + I     +P+ F G GE + DL  F     ++ 
Sbjct: 234 EGFNNDLDLTGIILTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 294 ILGMGDM 300


>gi|315303701|ref|ZP_07874216.1| signal recognition particle protein [Listeria ivanovii FSL F6-596]
 gi|313627928|gb|EFR96546.1| signal recognition particle protein [Listeria ivanovii FSL F6-596]
          Length = 450

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GADVMKSLTPGQQVIKIVQEELTNLMGGEESKIGT-ADRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +   +D +IIDTAGRLH +  LM  + ++  +        P  +L V+D+ TGQ+A+   
Sbjct: 181 KEDHLDYVIIDTAGRLHIDETLMDELKQVKEIAT------PTEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I      P+ F+  GE +  LE F     ++ 
Sbjct: 235 ESFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|209694239|ref|YP_002262167.1| signal recognition particle protein [Aliivibrio salmonicida
           LFI1238]
 gi|208008190|emb|CAQ78333.1| signal recognition particle protein [Aliivibrio salmonicida
           LFI1238]
          Length = 461

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V+ +      
Sbjct: 2   FDNLTDRLSKTLKNISGKGRLTEENIKETLREVRMALLEADVALPVVRDFVKRIKENAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N      P VIL+ G+ G GKTT  GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQSELEAIMGDSNEALNLAC-QPPAVILMAGLQGAGKTTSTGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL++ A     DF  S        +   A   A+
Sbjct: 121 AKLLKERDKKKVLVVSADVYRPAAIKQLEMLASEVDVDFFPSSADQKPIDIVDGAISHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRL  ++ +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFFDVVIVDTAGRLAVDTEMMEEIKQLHAHVN------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F  +   TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF  +  ++ I
Sbjct: 235 AFGDILPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|312140440|ref|YP_004007776.1| signal recognition particle protein [Rhodococcus equi 103S]
 gi|311889779|emb|CBH49096.1| signal recognition particle protein [Rhodococcus equi 103S]
          Length = 526

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 92/318 (28%), Positives = 149/318 (46%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL     D    E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FESLSDRLTGALKDLRGKGRLSGADIDATCREIRLALLEADVALPVVRTFIAKIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKIVNEELVGILGGETRRLQF-AKTPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177
           +K + D G   +L A D  R  A+ QL+I  +R  A       G+              D
Sbjct: 121 AKWLKDQGHTPLLVACDLQRPGAVSQLQIVGERAGAAVFAPHPGTSIGGGENPLGISAAD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A+ K+ DV+I+DTAGRL  +  LMA    +       D   P   + VL
Sbjct: 181 PVEVARAGVEEARNKQYDVVIVDTAGRLGIDEELMAQAAGI------RDAVQPDETIFVL 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F +  G TG+++TK+DG ARGG  + +      P+ F   GE + D
Sbjct: 235 DAMIGQDAVHTAEAFKSGVGFTGVVLTKLDGDARGGAALSVREVTGEPILFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     ++ I G  D
Sbjct: 295 FDVFHPDRMASRILGMGD 312


>gi|168030830|ref|XP_001767925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680767|gb|EDQ67200.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 383

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 182/311 (58%), Gaps = 6/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDG--VREELEDLLIRSDIGVAVA 63
           +  ++ S I+ L  GF+ T   L   + ++++   LD+   + +ELE++L+ SD G   A
Sbjct: 73  IKEKAKSDIQLLFSGFSKTRENL-AVVDELLTYWNLDESESILDELEEVLLVSDFGPKTA 131

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121
            KIV+ +     A  +     + + + + I K+L            + RP V+++VGVNG
Sbjct: 132 LKIVDTIRKDILAGRLKSGPQIKEALKKNIFKLLTERVTTTELQLGNSRPAVLMIVGVNG 191

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAA 180
            GKTT +GKL+ +    G+KV++AAGDTFR+AA +QL++WA RT ++ V         AA
Sbjct: 192 GGKTTTLGKLANRFKKEGVKVLMAAGDTFRAAAGEQLEVWAQRTGSEIVMAEGPKPRPAA 251

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A ++A  +  DV++ DT+GRLH N  LM  +    R + +    AP+ VL VLD T
Sbjct: 252 VLSQAVRRAVEEDFDVVLCDTSGRLHTNYNLMEELRGCKRAVSKALSSAPNEVLLVLDGT 311

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L Q   F+ V G TG I+TK+DGTARGG ++ +V    IPV F+GVGEGI+DL+P
Sbjct: 312 TGLNMLAQAREFNQVIGVTGFILTKLDGTARGGCVVSVVDELSIPVKFVGVGEGIDDLQP 371

Query: 301 FVAKDFSAVIT 311
           F A+ F   + 
Sbjct: 372 FDAQSFVDALF 382


>gi|295397866|ref|ZP_06807929.1| signal recognition particle protein [Aerococcus viridans ATCC
           11563]
 gi|294973911|gb|EFG49675.1| signal recognition particle protein [Aerococcus viridans ATCC
           11563]
          Length = 484

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 143/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L+  +  +    ++ +G  +E+       L+ +D+   V +  V+ +  +  
Sbjct: 2   AFESLSDRLQGAVQTMGKKGKITEGDLKEMMREVRLALLEADVNFKVVKDFVKRVNERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V++ +  ++    +   +  +  P VI++ G+ G GKTT +GK
Sbjct: 62  NSEVLQSLSPAQQVVKIVNDELTDLMGGEHEDIQF-ATTPPTVIMMAGLQGAGKTTTVGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L AGD +R AAI+QL+    +                +A +A + A
Sbjct: 121 LAAFLKKNDHKKPLLVAGDIYRPAAINQLQTIGQQLDLPVFTLGDQVSPVEIATQAIEYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D++ IDTAGRL  +  LM  +  +   ++      P  +L  +D+ TGQ A    
Sbjct: 181 KMNGHDLVFIDTAGRLQIDERLMTELKDIKAAVE------PDEILLTVDSMTGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG  RGG  + IV     P+ F G GE +N++E F     +  
Sbjct: 235 KAFDEELDITGVVLTKLDGDTRGGAALSIVSVTGKPIKFTGTGEKLNEIERFYPDRMANR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|15675165|ref|NP_269339.1| putative signal recognition particle [Streptococcus pyogenes M1
           GAS]
 gi|13622328|gb|AAK34060.1| putative signal recognition particle [Streptococcus pyogenes M1
           GAS]
          Length = 519

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q++L  V+E +  +L   +   +      P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENHNDYVLIDTAGRLQIDEKLMGELRDVKAL------AQPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     S+ 
Sbjct: 235 YEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|145224761|ref|YP_001135439.1| signal recognition particle protein [Mycobacterium gilvum PYR-GCK]
 gi|315445091|ref|YP_004077970.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. Spyr1]
 gi|145217247|gb|ABP46651.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium gilvum PYR-GCK]
 gi|315263394|gb|ADU00136.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mycobacterium sp. Spyr1]
          Length = 535

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 88/326 (26%), Positives = 147/326 (45%), Gaps = 38/326 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ +    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTGALSGLRGKGRLTDADIDATAREIRLALLEADVSLPVVRAFISRIKDRAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSAALNPAQQVVKIVNEELVAILGGETRQLAF-ARNPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI----------------- 174
           +K +   G   +L A D  R  A++QL+I  +R                           
Sbjct: 121 AKWLKAQGHTPLLVACDLQRPGAVNQLQIVGERAGVHVFAPHPGVSPAGETIEQMTAHAR 180

Query: 175 -----GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D  ++A     +A++K  DV+I+DTAGRL  +  LMA    +       D   
Sbjct: 181 SETAGAGDPVSVAAAGLAEARSKLYDVVIVDTAGRLGIDQELMAQAAAI------RDAVN 234

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  +L VLDA  GQ+A+   + F    G TG+++TK+DG ARGG  + +      P+ F 
Sbjct: 235 PDEILFVLDAMIGQDAVTTADAFREGVGFTGVVLTKLDGDARGGAALSVREVTGQPILFA 294

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
             GE + D + F     ++ I G  D
Sbjct: 295 SAGEKLEDFDVFHPDRMASRILGMGD 320


>gi|319425569|gb|ADV53643.1| signal recognition particle protein [Shewanella putrefaciens 200]
          Length = 457

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + K +   ++  +   +  P V+++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVLMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +     K + + + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLAAEVDVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+IIDTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIIDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|326382869|ref|ZP_08204559.1| signal recognition particle protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198459|gb|EGD55643.1| signal recognition particle protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 524

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 90/318 (28%), Positives = 147/318 (46%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTGALKDLRGKGRLTDADVDATAREIRLALLEADVSLPVVRTFIARIKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++       + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQIVKIVNEELIGILGGETRRVQL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177
           S  +   G   +L A D  R  A+ QL+I  +R          G+              D
Sbjct: 121 SAWLVKQGHTPLLVACDLQRPGAVQQLQIVGERAGVPVFAPHPGTSVGGEGALGVDGSAD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+A    ++A+ K+ DV+IIDTAGRL  ++ LM     +       D  +P  VL VL
Sbjct: 181 PVAVAQAGVQEAKDKQHDVVIIDTAGRLGIDAELMRQASDI------RDATSPDEVLFVL 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   + F      TG+++TK+DG ARGG  + +      P+ F   GE + D
Sbjct: 235 DAMIGQDAVTTAQAFADGVDFTGVVLTKLDGDARGGAALSVREITGRPIMFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     ++ I G  D
Sbjct: 295 FDVFHPDRMASRILGMGD 312


>gi|325675945|ref|ZP_08155628.1| signal recognition particle protein [Rhodococcus equi ATCC 33707]
 gi|325553183|gb|EGD22862.1| signal recognition particle protein [Rhodococcus equi ATCC 33707]
          Length = 526

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 92/318 (28%), Positives = 149/318 (46%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   + D+    RL     D    E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FESLSDRLTGALKDLRGKGRLSGADIDATCREIRLALLEADVALPVVRTFIAKIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKIVNEELVGILGGETRRLQF-AKTPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS--------------D 177
           +K + D G   +L A D  R  A+ QL+I  +R  A       G+              D
Sbjct: 121 AKWLKDQGHTPLLVACDLQRPGAVSQLQIVGERAGAAVFAPHPGTSIGGGENPLGISAAD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A+ K+ DV+I+DTAGRL  +  LMA    +       D   P   + VL
Sbjct: 181 PVEVARAGVEEARNKQYDVVIVDTAGRLGIDEELMAQAAGI------RDAVQPDETIFVL 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F +  G TG+++TK+DG ARGG  + +      P+ F   GE + D
Sbjct: 235 DAMIGQDAVHTAEAFKSGVGFTGVVLTKLDGDARGGAALSVREVTGEPILFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     ++ I G  D
Sbjct: 295 FDVFHPDRMASRILGMGD 312


>gi|296171453|ref|ZP_06852739.1| signal recognition particle protein [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295894139|gb|EFG73899.1| signal recognition particle protein [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 522

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 143/311 (45%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D   E    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALQGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKDRAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKT++ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELIGILGGETRQLAF-AKTPPTVVMLAGLQGSGKTSLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D  R AA++QL++  +R          G    +   +    A A
Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGESPESGPGDPVAVAAA 180

Query: 192 -------KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                  K  DV+I+DTAGRL  +  LMA    +       D   P  VL VLDA  GQ+
Sbjct: 181 GLAEARAKHHDVVIVDTAGRLGIDDELMAQAAAI------RDAVDPDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   E F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|71910728|ref|YP_282278.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS5005]
 gi|71853510|gb|AAZ51533.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
           pyogenes MGAS5005]
          Length = 520

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q++L  V+E +  +L   +   +      P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENHNDYVLIDTAGRLQIDEKLMGELRDVKAL------AQPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     S+ 
Sbjct: 235 YEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|95930754|ref|ZP_01313487.1| signal recognition particle protein [Desulfuromonas acetoxidans DSM
           684]
 gi|95133234|gb|EAT14900.1| signal recognition particle protein [Desulfuromonas acetoxidans DSM
           684]
          Length = 451

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + K       +    RL     D    E+  +L+ +D+   V +  V  +  +   
Sbjct: 2   FDNLTDKFDAVFKKLSGKGRLTESHVDEAMREVRLVLLEADVNFKVVKDFVAAVRERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+V+  V + + +++           +  P  I++ G+ G GKTT  GKL
Sbjct: 62  TDVLKSLTPAQQVIKIVRDELGRLMGEGDNAALDLAAQPPVPIMLCGLQGAGKTTTCGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++       +L   D +R AAI+QLK    +       ++ G D  ++  +A + A+ 
Sbjct: 122 ALQLRRDKRDPLLVPADIYRPAAIEQLKTLGRQLGVAVFDTQPGDDPVSICEQAREFARL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D LI+DTAGRLH +S LM  +G++   L+      P  +L V DA TGQ+A+  V+ 
Sbjct: 182 NGHDTLILDTAGRLHIDSELMDELGRINDALQ------PREILFVADAMTGQDAVNVVKS 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG ARGG  + +      P+ F+G+GE ++ LE F     +  I 
Sbjct: 236 FDEKLDITGVVLTKLDGDARGGAALSVRAVTGKPIKFVGMGEKMDALEVFHPDRMAQRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|315648179|ref|ZP_07901280.1| signal recognition particle-docking protein FtsY [Paenibacillus
           vortex V453]
 gi|315276825|gb|EFU40168.1| signal recognition particle-docking protein FtsY [Paenibacillus
           vortex V453]
          Length = 333

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 191/311 (61%), Gaps = 2/311 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVA 61
            + ++S++ +  ++   G   T     E ++D+ I  +++D+   EELE++LI +D+GV 
Sbjct: 8   KESISSKTENVTKQFRDGLEKTRKGFIEKVSDLVIRRKKIDEEFYEELEEILIGADVGVN 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               ++++L  +   + +     L  V SE +  +L   S     +      VIL VGVN
Sbjct: 68  TVMDLMDDLRAEVKKRRIEDAADLQPVLSEKLMGLLRDDSSNELRENPDGITVILFVGVN 127

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +    G KVMLAAGDTFR+ AI+QL++W +R   + +  + GSD AA
Sbjct: 128 GVGKTTTIGKLAHRYKQEGKKVMLAAGDTFRAGAIEQLEVWGERVGVEVIKQQPGSDPAA 187

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+ ++ D+LI DTAGRL N + LM  + K+ RV++R  P APH VL VLDAT
Sbjct: 188 VMFDAVQAAKQRQADILICDTAGRLQNKTNLMEELNKIFRVIQREIPSAPHEVLMVLDAT 247

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q ++F   +G TGL++TK+DGTA+GG +I I     +PV  +G+GE + DL+ 
Sbjct: 248 TGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRQELNLPVKLVGLGEKMGDLQT 307

Query: 301 FVAKDFSAVIT 311
           F ++ F   + 
Sbjct: 308 FDSEQFVHALF 318


>gi|313203704|ref|YP_004042361.1| signal recognition particle subunit ffh/srp54 (srp54) [Paludibacter
           propionicigenes WB4]
 gi|312443020|gb|ADQ79376.1| signal recognition particle subunit FFH/SRP54 (srp54) [Paludibacter
           propionicigenes WB4]
          Length = 439

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+     +    ++ +       +++   L+ +D+   +A+   + +  K   
Sbjct: 2   FESLSERLERSFKILKGEGKISEINVAETLKDVRKALLDADVNFKIAKTFTDTVKEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   S   N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTSLKPNQLMVKIVHDELAQLMGGASVDINLKGS--PTVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +        +L A D +R AAI+QLK+  ++            +  ++A  A K A+
Sbjct: 120 ANLLKTKRSKNPLLVACDVYRPAAIEQLKVLGEQLGVPVYSDLESKNPVSIAEAAIKHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRL  +  +M  I  + + +       P  +L V+D+ TGQ+A+   +
Sbjct: 180 LHGNDVVIVDTAGRLAVDEAMMNEIAAIKKAIN------PQEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+I+TK+DG  RGG  + I      P+ F+G GE ++ L+ F  +  +  I
Sbjct: 234 EFNDRLDFDGVILTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKMDALDVFYPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|253702085|ref|YP_003023274.1| signal recognition particle protein [Geobacter sp. M21]
 gi|251776935|gb|ACT19516.1| signal recognition particle protein [Geobacter sp. M21]
          Length = 453

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S KL      +     + ++ V++ L +    L+ +D+   V ++ VE++  +   
Sbjct: 2   FATLSDKLDLVFKKLRGQGVMTEENVKDALREVRLALLEADVNFKVVKEFVEKVRGRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V + +  ++           +  P  I++VG+ G GKTT  GKL
Sbjct: 62  TEVLQSLAPGQQVIKIVHDELVLLMGGEEDNSLDLAAKPPVAIMLVGLQGAGKTTSCGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K +L   D +R AAI+QLK+   +   +   SE       +   A + A  
Sbjct: 122 AKFLKAQRKKALLVPADVYRPAAIEQLKVLGRQLDIEVFGSEATQKPLEICRAAHRYATL 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I DTAGR   +  LM  +  +       D  AP  +L V DA TGQ A+     
Sbjct: 182 NGFDVVIFDTAGRHQIDDYLMEELEAI------RDELAPREILFVADAMTGQEAVNVASG 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+I+TK+DG A+GG  + I      PV F+G+GE ++ L+ F A    + I 
Sbjct: 236 FNDRLGITGVILTKLDGDAKGGAALSIKAVTGKPVKFVGLGEKLDALDVFHADRLVSRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|33595534|ref|NP_883177.1| cell division protein [Bordetella parapertussis 12822]
 gi|33565612|emb|CAE40258.1| cell division protein [Bordetella parapertussis]
          Length = 355

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 180/307 (58%), Gaps = 11/307 (3%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SW+ +L +G + T   +      +    ++D+ + EELE  LI +D G+   +K++  
Sbjct: 53  KASWLSRLKQGLSRTGQNIGG----LFVGVKVDENLFEELESALIMADAGIEATEKLLAA 108

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   + +     +   + +L+   L PL + F+   +  P V+++ GVNG GKTT I
Sbjct: 109 LRARVKKERIDDPAQVKTALRQLLADHLWPLERSFDLGRAQ-PLVVMIAGVNGAGKTTSI 167

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G  V+LAAGDTFR+AA +QL  W  R +   + S+ G D AA+A+++   
Sbjct: 168 GKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVI-SQDGGDPAAVAFDSVNA 226

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+ V V+++DTAGRL     LM  + K+ RV+ + +  APH VL V+D  TGQNAL Q
Sbjct: 227 GRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQ 286

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAK 304
           +  F A    TGL++TK+DGTA+GG L  +    +    IPVY++GVGEG+ DL+PFVA 
Sbjct: 287 IRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVAD 346

Query: 305 DFSAVIT 311
           +F+A + 
Sbjct: 347 EFAAALL 353


>gi|320539046|ref|ZP_08038720.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Serratia symbiotica str. Tucson]
 gi|320030886|gb|EFW12891.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Serratia symbiotica str. Tucson]
          Length = 453

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 145/306 (47%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FENLTDRLSRPLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT   KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKSELIAAMGAVNTELNL-AAQPPAVVLMAGLQGAGKTTSAAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A+    DF  SE+      +   A +QA+
Sbjct: 121 GKFLKEKHKKKVLVVSADIYRPAAIKQLEALAEGVGIDFFPSEVKEKPLDIVNRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIRQVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|87125498|ref|ZP_01081343.1| Signal recognition particle protein [Synechococcus sp. RS9917]
 gi|86166798|gb|EAQ68060.1| Signal recognition particle protein [Synechococcus sp. RS9917]
          Length = 492

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++ +    G  +E+   L+ +D+ + V +  V E+  K   
Sbjct: 2   FDELSARFEDAVKGLRGQDKISETNVEGALKEVRRALLEADVSLPVVKDFVAEVRQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+ +  V + + +++   + P        P V+L+ G+ G GKTT   KL
Sbjct: 62  ADVVRGISPDQKFIQVVHDQLVEVMGGGNAPL-ARAEQAPTVVLMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + D G + ++   D +R AAIDQL+   ++   +       +    +A     +A+ 
Sbjct: 121 GLYLKDQGRRALMVGADVYRPAAIDQLRTLGEQIGVEVFSLGAEAKPEDIASAGLAKARQ 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D L++DTAGRL  +  +M  + ++   ++      P  VL V+D+  GQ A      
Sbjct: 181 EGFDTLLVDTAGRLQIDQSMMDEMVRIRSAVQ------PDEVLLVVDSMIGQEAAELTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHEQVGITGAVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|220909384|ref|YP_002484695.1| signal recognition particle protein [Cyanothece sp. PCC 7425]
 gi|219865995|gb|ACL46334.1| signal recognition particle protein [Cyanothece sp. PCC 7425]
          Length = 489

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 140/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +        E+   L+ +D+ + V +  +EE+  K   
Sbjct: 2   FDALSERLEAAWKKLRGQDKISETNIQEALREVRRALLEADVNLQVVKDFIEEVRVKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + +++   + P   +    P ++L+ G+ G GKTT   KL
Sbjct: 62  AEVIAGIRPDQQFIKIVYDELVQVMGETNAPL-AEAETAPTIVLMAGLQGTGKTTAAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       +L A D +R AAIDQL     +            +   +A +  +  ++
Sbjct: 121 ALHLRKQNRSALLVATDIYRPAAIDQLVTLGKQIDVPVFQLGTEVNPVEIARQGVEHGRS 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VD +I+DTAGRL  +  +MA + ++   +      AP   L V+DA TGQ A      
Sbjct: 181 LNVDTVIVDTAGRLQIDPEMMAELAQIKTTI------APQETLLVVDAMTGQEAANLTRT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TKMDG  RGG  + +      P+ F+GVGE +  L+PF     ++ + 
Sbjct: 235 FHEQIGITGAILTKMDGDTRGGAALSVRQISGQPIKFIGVGEKVEALQPFYPDRLASRVL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|50914250|ref|YP_060222.1| signal recognition particle subunit FFH [Streptococcus pyogenes
           MGAS10394]
 gi|50903324|gb|AAT87039.1| signal recognition particle subunit FFH [Streptococcus pyogenes
           MGAS10394]
          Length = 522

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 147/310 (47%), Gaps = 17/310 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +T  F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  
Sbjct: 1   MTMAFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRE 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +    ++       +++L  V+E +  +L   +   +      P +I++VG+ G GKTT 
Sbjct: 61  RAIGHEIIDTLDPTKQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGAGKTTF 119

Query: 128 IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GKL+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  
Sbjct: 120 AGKLANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGL 179

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA+    D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A 
Sbjct: 180 EQARENHNDYVLIDTAGRLQIDEKLMEELRDVKAL------AQPNEILLVVDSMIGQEAA 233

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F     
Sbjct: 234 NVAYEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGERITDIETFHPDRM 293

Query: 307 SAVITGCLDY 316
           S+ I G  D 
Sbjct: 294 SSRILGMGDL 303


>gi|298490416|ref|YP_003720593.1| signal recognition particle protein ['Nostoc azollae' 0708]
 gi|298232334|gb|ADI63470.1| signal recognition particle protein ['Nostoc azollae' 0708]
          Length = 485

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 148/308 (48%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L+    S   KL+    D IS   + D +RE +   L+ +D+ + V +  + E+ T
Sbjct: 1   MFDALSDRLESAWKKLRGQ--DKISQSNIQDALRE-VRRALLEADVNLQVVKDFISEVET 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K    +V       Q+ +  V + + +++   + P   +   +  ++L+ G+ G GKTT 
Sbjct: 58  KAQGAEVITGVRPDQQFIKIVYDELVQVMGEENIPL-AEVEGKTTIVLMAGLQGTGKTTA 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+  +       +L A D +R AAI+QL     +           +D   +A +  +
Sbjct: 117 TAKLALHLRKLNRSCLLVATDVYRPAAIEQLLTLGKQIDVPVFELGSDADPVEIARQGVE 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ ++ +I+DTAGRL  +  +MA + ++   ++      P   L V+D+ TGQ A  
Sbjct: 177 HARAEGINTVIVDTAGRLQIDQDMMAELSRIKSTIE------PDETLLVVDSMTGQEAAN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               FH   G TG I+TK+DG +RGG  + +      P+ F+GVGE +  L+PF  +  +
Sbjct: 231 LTRTFHDQIGITGAILTKLDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPERMA 290

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 291 SRILGMGD 298


>gi|295102421|emb|CBK99966.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Faecalibacterium prausnitzii L2-6]
          Length = 451

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L      +    +L +   +    E+   L+ +D+   VA+    ++  +  
Sbjct: 2   AFESLTDRLAGVFKKLRGHGKLSEADIKAAMREVRMALLEADVNYKVAKDFCAKVSERAM 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E +  ++     P     +    +I++ G+ G GKTT   K
Sbjct: 62  GQEVMESLTPAQQVVKIVNEELVALMGGEEAPRLVIKNKGQTIIMLCGLQGNGKTTHAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K     G + ML A D +R AAIDQL++   +  A       G    A+A +A   A+
Sbjct: 122 LAKYYIKQGRRPMLVACDIYRPAAIDQLQVVGRQAGAPVFTL-PGEKPPAIAKKALAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGRL  + +LM  + ++   +           L V+DA  GQ+A+   +
Sbjct: 181 DYGNDIIILDTAGRLQIDEVLMQELVQIKEAVP------VDETLLVVDAMAGQDAVNVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK DG  RGG  + ++     P+ F G GE ++DLE F     +  I
Sbjct: 235 TFNETVGIDGIILTKTDGDTRGGAALSVLSVTGKPIKFQGTGEKLDDLEVFHPSRMAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|313896220|ref|ZP_07829773.1| signal recognition particle protein [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975019|gb|EFR40481.1| signal recognition particle protein [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 458

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 151/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    +L +        E+   L+ +D+   V +  V+ +  +   
Sbjct: 3   FENLSDRLQGIFKKMRGHGKLTEDDVNDAMREVRMALLEADVNFKVVKDFVKRVKERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V     + Q V+  V E + +++       N    + P VI++VG+ G GKTT  GKL
Sbjct: 63  QEVLDTLTAAQAVIKIVDEELTELMGGTESRLNIS-PNPPTVIMLVGLQGSGKTTSAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L A D +R AAI QL++  ++  A    S+   DA A+A  +   + A
Sbjct: 122 ALMLKKQGKRPLLVADDIYRPAAIKQLEVIGEKVGAPVF-SQGQEDAVAIARASIAYSAA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRL  +  LM  +  +   ++      PH +L V+DA TGQ A+     
Sbjct: 181 HANDVVIIDTAGRLQIDETLMQELRDIKAAVQ------PHEILLVVDAMTGQEAVNVAAA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A  G  G++MTK+DG ARGG  + I      PV F+G+GE ++ LE F     ++ I 
Sbjct: 235 FDASLGLDGIVMTKLDGDARGGAALSIKAVTGRPVKFVGMGEKLDPLEVFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|21910377|ref|NP_664645.1| putative signal recognition particle -inhibited division protein
           [Streptococcus pyogenes MGAS315]
 gi|21904574|gb|AAM79448.1| putative signal recognition particle -inhibited division protein
           [Streptococcus pyogenes MGAS315]
          Length = 520

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q++L  V+E +  +L   +   +      P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGTGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENRNDYVLIDTAGRLQIDEKLMEELRDVKAL------AQPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     S+ 
Sbjct: 235 YEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|323495854|ref|ZP_08100922.1| signal recognition particle protein [Vibrio sinaloensis DSM 21326]
 gi|323319070|gb|EGA72013.1| signal recognition particle protein [Vibrio sinaloensis DSM 21326]
          Length = 462

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  ++ +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFIKRVKEAAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQTELEAVMGESNEALNL-AAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +   K + + + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLKEREKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSADQKPIDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLVVDTAGRLAIDEQMMGEIQDLHSAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|312795094|ref|YP_004028016.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54 [Burkholderia
           rhizoxinica HKI 454]
 gi|312166869|emb|CBW73872.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54 [Burkholderia
           rhizoxinica HKI 454]
          Length = 480

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 19/311 (6%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           T    + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K
Sbjct: 24  TSMLDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVREK 83

Query: 74  RYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKT 125
              ++V       Q ++  V   +  ++    +    + +     P VIL+ G+ G GKT
Sbjct: 84  ALGEEVISSLTPGQALVGVVQRELTAVIGGDYEGKAAELNLAVTPPAVILMAGLQGAGKT 143

Query: 126 TVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T +GKL+K +      KV+  + D +R AAI QLK   ++  ADF  S+       +A +
Sbjct: 144 TTVGKLAKLLREMQKKKVLTVSCDVYRPAAIAQLKTVTEQVGADFFPSQPDQKPLDIARD 203

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+    DVLI+DTAGRL  +  +M  I  +   LK          L V+DA  GQ+
Sbjct: 204 ALDWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHAQLKPA------ETLFVVDAMLGQD 257

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   + F+     TG+++TK+DG +RGG  + +      P+ F+GVGE ++ LE F  +
Sbjct: 258 AVNTAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGRPIKFVGVGEKLDGLETFYPE 317

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 318 RMANRILGMGD 328


>gi|294339024|emb|CAZ87371.1| Signal recognition particle protein (Fifty-four homolog) (p48)
           [Thiomonas sp. 3As]
          Length = 449

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    R+ +     +  E+   L+ +D+ + V ++    +  K   
Sbjct: 2   LNNLTQRLSRVVKTLKGEARITESNIQDMLREVRLALLEADVALPVVREFTARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  V   +  ++   + P N   +  P ++L+ G+ G GKTT   KL
Sbjct: 62  QDVVGSLTPGQALVGVVQRELADLMGGDAVPINL-ATQPPAIVLMAGLQGAGKTTTTAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KV+  + D +R AAI QL+    +  A+F  S        +A  A + A+
Sbjct: 121 ARLLTERQKKKVLTVSCDVYRPAAIAQLQTVTAQAGAEFFPSSPDDKPLDIARRAVEFAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   DVL++DTAGRL  +  +M  I ++   LK      P   L V+DA  GQ+A+    
Sbjct: 181 SHHFDVLLVDTAGRLSVDEAMMREIKELHGALK------PIETLFVVDAMQGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+++TK+DG ARGG  + +      P+ F GV E I+ LEPF  +  +  I
Sbjct: 235 AFHDTLPLTGIVLTKLDGDARGGAALSVRQVTGAPIKFAGVSEKIDGLEPFDPRRMADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|3746964|gb|AAC64139.1| signal recognition particle 54 kDa subunit precursor [Arabidopsis
           thaliana]
          Length = 564

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 153/308 (49%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              +LT G  +   KLK    ++++   + + +R+ +   L+ +D+ + V ++ V+ +  
Sbjct: 77  MFGQLTGGLEAAWSKLKG--EEVLTKDNIAEPMRD-IRRALLEADVSLPVVRRFVQSVSD 133

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +     V       Q+++  V + + K++        +  S  P VIL+ G+ GVGKTTV
Sbjct: 134 QAVGMGVIRGVKPDQQLVKIVHDELVKLMGGEVSELQFAKSG-PTVILLAGLQGVGKTTV 192

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+  +   G   ML AGD +R AAIDQL I  ++       +      A +A +  K
Sbjct: 193 CAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLK 252

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+   VDV+I+DTAGRL  +  +M  +  + + L       P  VL V+DA TGQ A  
Sbjct: 253 EAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLN------PTEVLLVVDAMTGQEAAA 306

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF     +
Sbjct: 307 LVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMA 366

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 367 GRILGMGD 374


>gi|308177268|ref|YP_003916674.1| signal recognition particle protein Ffh [Arthrobacter arilaitensis
           Re117]
 gi|307744731|emb|CBT75703.1| signal recognition particle protein Ffh [Arthrobacter arilaitensis
           Re117]
          Length = 521

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 147/313 (46%), Gaps = 25/313 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL +   +    E+   L+ +D+ V V +  V ++  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLTEADIDGTAREIRRALLDADVAVPVVRGFVAQVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSESLNPGQQVVKIVNEELVGILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---------GSDAAALA 182
           +K +   G   ML A D  R  A+ QL+I  +R                     D   +A
Sbjct: 121 AKHLKAEGHTPMLVACDLQRPNAVKQLQINGERAGVPVYAPHPGVSSEFDTPTGDPVTVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +   +A+AK  D++I+DTAGRL  ++ +MA    +   +       P  VL V+DA  G
Sbjct: 181 RDGVAEAKAKLHDIVIVDTAGRLGVDTEMMAQAANIRAAIN------PDEVLFVIDAMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+   + FH     TG++++K+DG ARGG  + +      PV F   GE ++D E F 
Sbjct: 235 QDAVNTAQAFHEGVDFTGVVLSKLDGDARGGAALSVASVTGKPVMFASTGENLDDFEIFH 294

Query: 303 AKDFSAVITGCLD 315
               ++ I    D
Sbjct: 295 PDRMASRILDMGD 307


>gi|224541338|ref|ZP_03681877.1| hypothetical protein CATMIT_00498 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525775|gb|EEF94880.1| hypothetical protein CATMIT_00498 [Catenibacterium mitsuokai DSM
           15897]
          Length = 463

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 18/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L+E +  +     L +     +  E+   L+ +D+   V ++ +     K  
Sbjct: 2   AFESLSDRLQETLKKVTGQATLTESNMEEMLREIRLALLEADVNYQVVKEFIANTKEKAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q ++  V + +  +L         D+S  P +I++VG+ G GKTT  GK
Sbjct: 62  GQNVIGSLKPGQVLVKIVHDELVSLLGTEM--VTVDYSKDPTIIMMVGLQGSGKTTTAGK 119

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++K +    G K +L AGD +R AAIDQLK    + +         +    +  EA  +A
Sbjct: 120 IAKLITEKQGKKPLLVAGDIYRPAAIDQLKTLGAQLNIPVFSKGTDTPVETIVTEALAKA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DV+IIDTAGRL  +  LM  +  +  +        P  +L V+D+  GQ  +   
Sbjct: 180 RDDHNDVVIIDTAGRLQIDEKLMQELANVKEI------AHPDEILLVVDSLAGQEIVNVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+   G TG ++TK+DG ARGGG + I     +P+ ++G GE +++++ F     +  
Sbjct: 234 STFNERLGITGAVLTKLDGDARGGGALSIRHVTHVPIKYIGTGEKLDEIDYFYPDRMADR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|15237580|ref|NP_196014.1| CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT);
           7S RNA binding / GTP binding / mRNA binding / signal
           sequence binding [Arabidopsis thaliana]
 gi|586038|sp|P37107|SR54C_ARATH RecName: Full=Signal recognition particle 54 kDa protein,
           chloroplastic; Short=54 chloroplast protein; Short=54CP;
           Short=SRP54; AltName: Full=FFC; Flags: Precursor
 gi|396701|emb|CAA79981.1| 54CP [Arabidopsis thaliana]
 gi|7406404|emb|CAB85514.1| signal recognition particle 54CP protein precursor [Arabidopsis
           thaliana]
 gi|15293131|gb|AAK93676.1| putative signal recognition particle 54CP protein precursor
           [Arabidopsis thaliana]
 gi|24030445|gb|AAN41376.1| putative signal recognition particle 54CP protein precursor
           [Arabidopsis thaliana]
 gi|332003291|gb|AED90674.1| signal recognition particle subunit [Arabidopsis thaliana]
          Length = 564

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 95/311 (30%), Positives = 153/311 (49%), Gaps = 15/311 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  +   KLK    ++++   + + +R+ +   L+ +D+ + V ++ V+ 
Sbjct: 74  RAEMFGQLTGGLEAAWSKLKG--EEVLTKDNIAEPMRD-IRRALLEADVSLPVVRRFVQS 130

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +     V       Q+++  V + + K++        +  S  P VIL+ G+ GVGK
Sbjct: 131 VSDQAVGMGVIRGVKPDQQLVKIVHDELVKLMGGEVSELQFAKSG-PTVILLAGLQGVGK 189

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TTV  KL+  +   G   ML AGD +R AAIDQL I  ++       +      A +A +
Sbjct: 190 TTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQ 249

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             K+A+   VDV+I+DTAGRL  +  +M  +  + + L       P  VL V+DA TGQ 
Sbjct: 250 GLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLN------PTEVLLVVDAMTGQE 303

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF   
Sbjct: 304 AAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPD 363

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 364 RMAGRILGMGD 374


>gi|319902103|ref|YP_004161831.1| signal recognition particle-docking protein FtsY [Bacteroides
           helcogenes P 36-108]
 gi|319417134|gb|ADV44245.1| signal recognition particle-docking protein FtsY [Bacteroides
           helcogenes P 36-108]
          Length = 319

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 177/312 (56%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   +    ++DD V + LE++LI SD+GV    K
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFGKIARTVAGKSKVDDEVLDNLEEVLITSDVGVETTLK 64

Query: 66  IVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I+  +  +  A+  ++ Q +   + + I  +L   +      F      +P+VI+VVGVN
Sbjct: 65  IIGRIEKRAAAEKYMNAQELNMILRDEIAALLTENNSKDVDDFEAPIMKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++   AP  VL VLD +
Sbjct: 185 VAFDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVSDAPDEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q   F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQARQFTLATEVTAMAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F   +F   + G
Sbjct: 305 FRKVEFVDSLFG 316


>gi|313637361|gb|EFS02841.1| signal recognition particle protein [Listeria seeligeri FSL S4-171]
          Length = 450

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GADVMKSLTPGQQVIKIVQEELTNLMGGEESKIGT-ADRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +   +D +IIDTAGRLH +  LM  + ++  +        P  +L V+D+ TGQ+A+   
Sbjct: 181 KEDHLDYVIIDTAGRLHIDETLMDELKQVKEIAN------PTEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I      P+ F+  GE +  +E F     ++ 
Sbjct: 235 ESFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFVATGEKMEAIETFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|259503529|ref|ZP_05746431.1| signal recognition particle-docking protein FtsY [Lactobacillus
           antri DSM 16041]
 gi|259168607|gb|EEW53102.1| signal recognition particle-docking protein FtsY [Lactobacillus
           antri DSM 16041]
          Length = 447

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 179/311 (57%), Gaps = 8/311 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S +  A +     +K  +G   +       +   ++S R +D+   ++LED+LI SD+G 
Sbjct: 129 SEEPAADQQE---KKYDRGLEKSRTGFGARLNRFLASFRHVDEDFFDDLEDMLIESDVGY 185

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDF---SHRPHVILV 116
            +A K+ + L  +   ++   ++ + +V  E +  +     +  N D    +  P VI+ 
Sbjct: 186 DMAMKLSDSLREEVKLENAKSKQEVSNVIIEKMVDLYEEAGRNENPDLQMAAQGPTVIMF 245

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT IGK++      G KV+LAA DTFR+ A +QL +WA R   D V      
Sbjct: 246 VGVNGAGKTTTIGKMAALFKRQGKKVLLAAADTFRAGATEQLDVWAQRDGVDIVTGPENG 305

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A ++A+ +  DVL +DTAGRL N   LM  + KM R+L R  P APH VL V
Sbjct: 306 DPAAVVFDAVQKAKREDYDVLFVDTAGRLQNKVNLMNELAKMKRILTREIPDAPHEVLLV 365

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL Q ++F      TG+++TK+DGTARGG ++ I     +PV ++G+GE ++
Sbjct: 366 LDATTGQNALNQAKLFKQSTDVTGIVLTKLDGTARGGIVLAIRNELHLPVKYVGLGEKVD 425

Query: 297 DLEPFVAKDFS 307
           DL+ F A DF 
Sbjct: 426 DLQKFNASDFV 436


>gi|227872399|ref|ZP_03990746.1| signal recognition particle protein Ffh [Oribacterium sinus F0268]
 gi|227841759|gb|EEJ52042.1| signal recognition particle protein Ffh [Oribacterium sinus F0268]
          Length = 459

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 146/305 (47%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L +   ++    +L +       +E+   L+ +D+   + +  + ++     
Sbjct: 2   AFESLSDRLSDIFQNLSGKGKLSEEDVNLALKEVRMALLEADVNFKLVKDFIAKVKESAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V + + KM+   +            V+++VG+ G GKTT   K
Sbjct: 62  GEEVFSSLSPAQTVIKIVRDELTKMMGEENTELKLRPQSEITVLMMVGLQGAGKTTTAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K      K +L A D +R AAI+QL++ A++ S  F           +A +A+++A+
Sbjct: 122 LAGKFQKQHRKPLLVACDIYRPAAIEQLRVNAEKLSIPFFSLGNQVKPEEIAKKAYEEAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  ++LI+DTAGRL  +  LM  + +M   +           +  +DA TGQ A+   E
Sbjct: 182 AKGYNLLILDTAGRLQIDDALMEELKRMKSAVP------VDWTILTVDAMTGQEAVNVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I++K DG  RGG  + I      P+ +LG+GE ++DLEPF     +  I
Sbjct: 236 SFSKEVGVNGVILSKCDGDTRGGAALSIKAMTGQPILYLGMGEKLSDLEPFYPDRMAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|218782478|ref|YP_002433796.1| signal recognition particle protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763862|gb|ACL06328.1| signal recognition particle protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 442

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +    +L +       +E+   L+ +D+   V + ++  +  +   
Sbjct: 2   FESLSDRLGSVFKKLKGQGKLSEKNIQDGLKEVRLALLEADVHYKVVKTLIAAIKERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V+E +  ++   ++  N    H P  I++VG+ G GKTT  GKL
Sbjct: 62  QEVLESLTPGQQVVKIVNEELTNLMGGANEEINLGGGH-PASIMLVGLQGSGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G K  L   D +R AAI+QL       S     S+  S    +A  A  +   
Sbjct: 121 AVYLRGQGRKPYLVPADVYRPAAIEQLTKIGKELSIPVYPSDTDSKPEKIAELARIKCAQ 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D +I+DTAGRLH +  LMA +G++       D      +L V DA TGQ+A+   + 
Sbjct: 181 EGCDTMILDTAGRLHIDDELMAELGRIKATTPPSD------ILLVADAMTGQDAVNMAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+I+TKMDG ARGG  + I      P+ F+G GE  N  E F     ++ I 
Sbjct: 235 FNDAMDVGGVILTKMDGDARGGAALSIRSITGKPIKFIGTGEKSNAFEAFHPNRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|146296632|ref|YP_001180403.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410208|gb|ABP67212.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 300

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 121/302 (40%), Positives = 187/302 (61%), Gaps = 4/302 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     E + +++ + +++DD + +ELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFFDRLKEGLSKTKKNFTERVENLLKAFKQVDDELFDELEEVLVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  K     +S  +    V EL+ + +  +    N      P +IL+VGVNGVGKTT IG
Sbjct: 61  LKEKVKMNKISDSQ---AVKELLKEEMFNIINLPNKLRERYPLIILMVGVNGVGKTTSIG 117

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++  +   G KV++AA DTFR+AAIDQL+IWA R   D +    G+D AA+ ++  +  
Sbjct: 118 KIANLLKSNGKKVIIAAADTFRAAAIDQLEIWAKRVGCDIIKHVEGADPAAVVFDGIQAM 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQN L Q 
Sbjct: 178 RARKADVLIVDTAGRLHTKKNLIEELRKIDRVINQQIPEAEKETLLVIDATTGQNGLIQA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     +G+++TK+DGTA+GG ++ I    KIPV F+GVGE I+DL+ F  K+F   
Sbjct: 238 KEFNQAVNISGIVLTKLDGTAKGGIVVSICDELKIPVKFIGVGEKIDDLQEFDPKEFIDA 297

Query: 310 IT 311
           + 
Sbjct: 298 LF 299


>gi|222529161|ref|YP_002573043.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456008|gb|ACM60270.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 301

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 190/302 (62%), Gaps = 4/302 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +I +L +G + T     E +  ++ S +++DD + EELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFIDRLKEGLSKTKKNFTEKVESLLKSFKQIDDDLFEELEEVLVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +   + +   +V   V EL+ + ++ +    N      P +IL+VGVNGVGKTT IG
Sbjct: 61  LKERVKKERILDPQV---VKELLKEEMLNIINLENKLSEKYPLIILMVGVNGVGKTTSIG 117

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++  +   G KV++AA DTFR+AA +QL+IWA R   D +    GSD AA+ ++  +  
Sbjct: 118 KIANLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGSDPAAVVFDGIQAM 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQNAL Q 
Sbjct: 178 RARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEAAKETLLVIDATTGQNALNQA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     +G+++TK+DGTA+GG +I I    KIPV F+GVGE I+DL+ F AK+F   
Sbjct: 238 KEFNQAVNISGIVLTKLDGTAKGGIVISICDELKIPVKFVGVGEKIDDLQQFNAKEFVDA 297

Query: 310 IT 311
           + 
Sbjct: 298 LF 299


>gi|282882960|ref|ZP_06291564.1| signal recognition particle protein [Peptoniphilus lacrimalis
           315-B]
 gi|281297167|gb|EFA89659.1| signal recognition particle protein [Peptoniphilus lacrimalis
           315-B]
          Length = 445

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+  +  +    +L     D    E++  L+ +D+   V +  ++    +   
Sbjct: 3   FESLSEKLQNTLNKLTGKGKLTEKDIDAAMREVKLALLEADVNFKVVKDFIKNTKERALG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+V+  V++ +  ++    +    D+S +P VIL+ G+ G GKTT  GKL
Sbjct: 63  SQVLESLTPGQQVIKIVNDELKNLMGK--EQVKIDYSKKPTVILMCGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + KM   G + +L A D +R AAI QL++                D   ++  + + A+ 
Sbjct: 121 ANKMKQEGKRPLLVACDVYRPAAIKQLQVVGKSVDVPVFTMGDKIDPVDISKASLEHAKK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLIIDTAGRL  +  LM  +  +   L+      P  VL VLD+ TGQ A+   + 
Sbjct: 181 NGNDVLIIDTAGRLQIDEKLMQELKNIYDALE------PSEVLLVLDSMTGQEAVNVADT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG ARGG  + I     +P+ F+  GE ++++E F     ++ I 
Sbjct: 235 FDDTLKLTGVILTKLDGDARGGAALSIRAVTDVPIKFIASGEKMDNIEVFHPDRMASRIL 294

Query: 312 GCLDY 316
           G  D 
Sbjct: 295 GMGDM 299


>gi|163790804|ref|ZP_02185229.1| signal recognition particle protein [Carnobacterium sp. AT7]
 gi|159873872|gb|EDP67951.1| signal recognition particle protein [Carnobacterium sp. AT7]
          Length = 437

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  +T +    ++ +  V+E   E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLTERLQSAMTKMRRKGKVTEADVKEMMREVRLALLEADVNFKVVKDFVKTVSARAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  VSE + +++           +  P V+++VG+ G GKTT  GK
Sbjct: 62  GAEVLESLSPGQQIIKIVSEELTELMGGEQATIQT-AAKAPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L A D +R AAI QL+    +                +A +  ++A
Sbjct: 121 LASYLRKNQNKRPLLVAADIYRPAAIQQLETIGKQLDVPVFSMGDQVSPVEIARQGIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D ++IDTAGRL  +  LM  +  +    +      P  +  V+DA TGQ A    
Sbjct: 181 KAEHLDFVLIDTAGRLQIDETLMQELSDIKETTQ------PTEIFLVVDAMTGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F      TG+I+TK+DG  RGG  + I      P+ F G GE ++ LEPF     +  
Sbjct: 235 ASFDEQLDITGVILTKLDGDTRGGAALSIRAVTGKPIKFTGSGEKLDALEPFYPDRMANR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|254829203|ref|ZP_05233890.1| signal recognition particle protein [Listeria monocytogenes FSL
           N3-165]
 gi|290893069|ref|ZP_06556058.1| signal recognition particle protein [Listeria monocytogenes FSL
           J2-071]
 gi|258601615|gb|EEW14940.1| signal recognition particle protein [Listeria monocytogenes FSL
           N3-165]
 gi|290557429|gb|EFD90954.1| signal recognition particle protein [Listeria monocytogenes FSL
           J2-071]
          Length = 450

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GADVMKSLTPGQQVIKIVQEELTSLMGGEESKIGT-ADRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  +        P  +L V+D+ TGQ+A+   
Sbjct: 181 KEEHLDYVIIDTAGRLHIDETLMDELKQVKEIAT------PTEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+  GE +  LE F     ++ 
Sbjct: 235 QSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|46908032|ref|YP_014421.1| signal recognition particle protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093840|ref|ZP_00231584.1| signal recognition particle protein [Listeria monocytogenes str. 4b
           H7858]
 gi|226224404|ref|YP_002758511.1| signal recognition particle protein Ffh [Listeria monocytogenes
           Clip81459]
 gi|254826157|ref|ZP_05231158.1| signal recognition particle protein [Listeria monocytogenes FSL
           J1-194]
 gi|254933273|ref|ZP_05266632.1| signal recognition particle protein [Listeria monocytogenes
           HPB2262]
 gi|254994058|ref|ZP_05276248.1| hypothetical protein LmonocytoFSL_14589 [Listeria monocytogenes FSL
           J2-064]
 gi|255521154|ref|ZP_05388391.1| hypothetical protein LmonocFSL_08006 [Listeria monocytogenes FSL
           J1-175]
 gi|300763886|ref|ZP_07073883.1| signal recognition particle protein [Listeria monocytogenes FSL
           N1-017]
 gi|46881302|gb|AAT04598.1| signal recognition particle protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47017781|gb|EAL08570.1| signal recognition particle protein [Listeria monocytogenes str. 4b
           H7858]
 gi|225876866|emb|CAS05575.1| Putative signal recognition particle protein Ffh [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|293584833|gb|EFF96865.1| signal recognition particle protein [Listeria monocytogenes
           HPB2262]
 gi|293595397|gb|EFG03158.1| signal recognition particle protein [Listeria monocytogenes FSL
           J1-194]
 gi|300515622|gb|EFK42672.1| signal recognition particle protein [Listeria monocytogenes FSL
           N1-017]
 gi|328466157|gb|EGF37314.1| signal recognition particle protein [Listeria monocytogenes 1816]
 gi|332312242|gb|EGJ25337.1| Signal recognition particle [Listeria monocytogenes str. Scott A]
          Length = 450

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GADVMKSLTPGQQVIKIVQEELTSLMGGEESKIGT-ADRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  +        P  +L V+D+ TGQ+A+   
Sbjct: 181 KEEHLDYVIIDTAGRLHIDETLMDELKQVKEIAT------PTEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+  GE +  LE F     ++ 
Sbjct: 235 QSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|16803841|ref|NP_465326.1| hypothetical protein lmo1801 [Listeria monocytogenes EGD-e]
 gi|47097384|ref|ZP_00234935.1| signal recognition particle protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|224500031|ref|ZP_03668380.1| hypothetical protein LmonF1_10289 [Listeria monocytogenes Finland
           1988]
 gi|224501398|ref|ZP_03669705.1| hypothetical protein LmonFR_02565 [Listeria monocytogenes FSL
           R2-561]
 gi|254831598|ref|ZP_05236253.1| hypothetical protein Lmon1_09603 [Listeria monocytogenes 10403S]
 gi|254899502|ref|ZP_05259426.1| hypothetical protein LmonJ_06799 [Listeria monocytogenes J0161]
 gi|254912359|ref|ZP_05262371.1| signal recognition particle protein [Listeria monocytogenes J2818]
 gi|254936686|ref|ZP_05268383.1| signal recognition particle protein [Listeria monocytogenes F6900]
 gi|284802247|ref|YP_003414112.1| hypothetical protein LM5578_2003 [Listeria monocytogenes 08-5578]
 gi|284995389|ref|YP_003417157.1| hypothetical protein LM5923_1954 [Listeria monocytogenes 08-5923]
 gi|16411255|emb|CAC99879.1| ffh [Listeria monocytogenes EGD-e]
 gi|47014232|gb|EAL05214.1| signal recognition particle protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|258609282|gb|EEW21890.1| signal recognition particle protein [Listeria monocytogenes F6900]
 gi|284057809|gb|ADB68750.1| hypothetical protein LM5578_2003 [Listeria monocytogenes 08-5578]
 gi|284060856|gb|ADB71795.1| hypothetical protein LM5923_1954 [Listeria monocytogenes 08-5923]
 gi|293590340|gb|EFF98674.1| signal recognition particle protein [Listeria monocytogenes J2818]
          Length = 450

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GADVMKSLTPGQQVIKIVQEELTSLMGGEESKIGT-ADRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  +        P  +L V+D+ TGQ+A+   
Sbjct: 181 KEEHLDYVIIDTAGRLHIDETLMDELKQVKEIAT------PTEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+  GE +  LE F     ++ 
Sbjct: 235 QSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|258653309|ref|YP_003202465.1| signal recognition particle protein [Nakamurella multipartita DSM
           44233]
 gi|258556534|gb|ACV79476.1| signal recognition particle protein [Nakamurella multipartita DSM
           44233]
          Length = 515

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 143/308 (46%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L    T++    RL     +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FETLSDRLSGVFTNLRGKGRLTPADVDRTCREIRVALLEADVALPVVRAFIARIKERANG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             VS      Q+++  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  VIVSAALNPAQQIIKIVNEELVAILGGETRRLTY-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +  +   G   +L A D  R  A+ QL+I  ++        E G+   D  A+A      
Sbjct: 121 ALWLKGQGHTPLLVASDLQRPNAVTQLQIVGEQAGVQVFAPEPGNGVGDPVAVARAGVAH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ +  D++I+DTAGRL  ++ +M     +       D   P  +L VLDA  GQ+A+  
Sbjct: 181 AKVRLHDIVIVDTAGRLGVDADMMQQAVDI------RDAVQPQEILFVLDAMVGQDAVTT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G+++TK+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGFNGVVLTKLDGDARGGAALSVRHVTGQPIMFASTGEKLADFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I G  D 
Sbjct: 295 RILGMGDM 302


>gi|317508405|ref|ZP_07966075.1| signal recognition particle protein [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253252|gb|EFV12652.1| signal recognition particle protein [Segniliparus rugosus ATCC
           BAA-974]
          Length = 515

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 145/315 (46%), Gaps = 26/315 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S S +L   ++ +    +L +   +     +   L+ +D+ + V ++ +  +  +   
Sbjct: 2   FSSLSDRLVGALSQLRGKGKLSEEDIDVTCKHIRIALLEADVALPVVREFIGRVKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +S      Q+V+  V E + ++L   S+   +     P VI++VG+ G GKTT+ GKL
Sbjct: 62  VALSGALNPAQQVVKIVDEELTEILGGESRRLQF-AKTPPTVIMLVGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI----------GSDAAAL 181
           +K +   G   +L A D  R  A+ QL++  +R        E             D  A+
Sbjct: 121 AKWLKHQGHAPLLVACDLQRPGAVKQLQVVGERAGVGVFAPEPGASLDNDGITVGDPVAV 180

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A    + A+ +  DV+++DTAGRL  +  LMA    +       D  +P  VL  +DA  
Sbjct: 181 ARAGVEFARGQHHDVVVVDTAGRLGVDQELMAQAAAI------RDAVSPDEVLFTVDAMI 234

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+AL     F    G TG+++TK+DG ARGG  + +      P+ F  VGE + D + F
Sbjct: 235 GQDALHAATAFDQGVGFTGVVLTKLDGDARGGAALSVRQVTGKPILFASVGEKLEDFDVF 294

Query: 302 VAKDFSAVITGCLDY 316
                S+ I    D 
Sbjct: 295 HPDRMSSRILDMGDL 309


>gi|218130040|ref|ZP_03458844.1| hypothetical protein BACEGG_01625 [Bacteroides eggerthii DSM 20697]
 gi|317476534|ref|ZP_07935781.1| signal recognition particle protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217987760|gb|EEC54087.1| hypothetical protein BACEGG_01625 [Bacteroides eggerthii DSM 20697]
 gi|316907277|gb|EFV28984.1| signal recognition particle protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 440

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 151/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +   N D   +P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGETAEINID--SKPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++ A++            +  A+A  A ++A+
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYSEPDSKNPVAIAQNAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  +   +       P+ +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDLVIVDTAGRLAVDEEMMNEIAAIKAAIN------PNEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNDRLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|116629442|ref|YP_814614.1| Signal recognition particle GTPase [Lactobacillus gasseri ATCC
           33323]
 gi|311110910|ref|ZP_07712307.1| signal recognition particle protein [Lactobacillus gasseri MV-22]
 gi|116095024|gb|ABJ60176.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Lactobacillus gasseri ATCC 33323]
 gi|311066064|gb|EFQ46404.1| signal recognition particle protein [Lactobacillus gasseri MV-22]
          Length = 476

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 151/307 (49%), Gaps = 18/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L++ + ++    ++ +        E+   L+ +D+   V +  ++++  +  
Sbjct: 2   AFENLSERLQKALKNLTGKGKISEADINDASREIRLALLEADVNFKVVKDFIKKIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V + + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVDDELTKMMGEEAVSLNKS-QHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAIDQLK    + +     SE   D A +     ++A
Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIDQLKQIGQQLNVPVY-SEDNQDVAEIVKHGLEEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM     + RV     P    + L V+DA TGQ A +  
Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDE---LKRVTAVAHP---DNTLLVVDAMTGQAATQVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+I+TK+DG  RGG  + I     +P+ F G GE + DL  F     ++ 
Sbjct: 234 EGFNNDLDLTGIILTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 294 ILGMGDM 300


>gi|160874405|ref|YP_001553721.1| signal recognition particle protein [Shewanella baltica OS195]
 gi|160859927|gb|ABX48461.1| signal recognition particle protein [Shewanella baltica OS195]
 gi|315266640|gb|ADT93493.1| signal recognition particle protein [Shewanella baltica OS678]
          Length = 457

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q  +  V   + K +   ++  +   +  P VI++ G+ G GKTT + KL
Sbjct: 62  QEVSKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVIMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K +L    D +R AAI QL+  A   + +F  S++      +A  A   A+
Sbjct: 121 GKFLRERHKKSVLVVSVDVYRPAAIKQLETLAQEVAVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKGLHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|317405462|gb|EFV85772.1| cell division protein [Achromobacter xylosoxidans C54]
          Length = 328

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/305 (38%), Positives = 180/305 (59%), Gaps = 11/305 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ +L +G + T     + I  I    ++D+ + EELE  LI +D G+   +K++  L 
Sbjct: 28  SWLSRLKQGLSRT----GQSIGGIFVGVKVDENLFEELESALIMADAGLEATEKLLTALR 83

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +     +   + +L+   L PL + F+   +  P V+++ GVNG GKTT IGK
Sbjct: 84  ARVKKERIEDPAKVKAALRQLLADHLRPLERAFDLKRAQ-PLVVMIAGVNGAGKTTSIGK 142

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G  V+LAAGDTFR+AA +QL  W  R +   + S+ G D AA+A+++    +
Sbjct: 143 LAHTFQRQGASVLLAAGDTFRAAAREQLIEWGSRNNVTVI-SQDGGDPAAVAFDSVNAGR 201

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ + V+++DTAGRL     LM  + K+ RV+ + DP APH VL V+D  TGQNAL Q+ 
Sbjct: 202 ARGMGVVMVDTAGRLPTQLHLMEELKKIRRVIGKADPAAPHEVLLVVDGNTGQNALAQIR 261

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAKDF 306
            F A    TGL++TK+DGTA+GG L  +    +    IPVY++GVGE + DL+PFVA +F
Sbjct: 262 AFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGESLEDLQPFVADEF 321

Query: 307 SAVIT 311
           +  + 
Sbjct: 322 AGALL 326


>gi|169830830|ref|YP_001716812.1| signal recognition particle-docking protein FtsY [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169637674|gb|ACA59180.1| signal recognition particle-docking protein FtsY [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 304

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 124/304 (40%), Positives = 181/304 (59%), Gaps = 2/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    +L +    T   L   +  ++  R  +D+ + EELE++LI++D+GV  + ++V  
Sbjct: 1   MGLFSRLKQSLTKTREVLAGKVEGLVYGRTTVDESLYEELEEILIQADVGVETSLELVAR 60

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  +  A+ +     L   + + + ++     +  N      P VILVVGVNG GKTT I
Sbjct: 61  VRERMKAQKLDDPTKLKPILKDELRRIFAGGDETANLRLDGDPTVILVVGVNGTGKTTSI 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  +   G KV+LAA DTFR+AAIDQL+IWA R   + +    G+D AA+ Y+A + 
Sbjct: 121 GKLAHLLRRDGKKVLLAAADTFRAAAIDQLEIWAHRAGVELIRHGEGADPAAVVYDAIQA 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A++ DVLIIDTAGRLH    LM  + K+ RV+ R  P AP  VL VLDATTG NA+ Q
Sbjct: 181 ARAREYDVLIIDTAGRLHTRVNLMEELKKVFRVVSRELPGAPQEVLLVLDATTGHNAVNQ 240

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F    G TG+++TK+DGTA+GG +  I  + KIPV  +G GE I DL  F A +F  
Sbjct: 241 AKIFGEAVGVTGIVLTKLDGTAKGGIVAAIRNSQKIPVKLVGTGERIEDLSYFHAGEFVD 300

Query: 309 VITG 312
            + G
Sbjct: 301 GLLG 304


>gi|255692684|ref|ZP_05416359.1| signal recognition particle protein [Bacteroides finegoldii DSM
           17565]
 gi|260621568|gb|EEX44439.1| signal recognition particle protein [Bacteroides finegoldii DSM
           17565]
          Length = 440

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 151/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +   N D   RP VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGETAEINID--SRPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++ A++      C     +   +A  A ++A+
Sbjct: 120 ARMLKSKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYCELDSKNPVEIAQHAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  +   +       P+ +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDLVIVDTAGRLAVDEQMMNEIAAIKEAIN------PNEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNDRLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|158522321|ref|YP_001530191.1| signal recognition particle protein [Desulfococcus oleovorans Hxd3]
 gi|158511147|gb|ABW68114.1| signal recognition particle protein [Desulfococcus oleovorans Hxd3]
          Length = 443

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 147/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + S KL      +     ++ + +DDG  +E+   L+ +D+   + ++ + ++  +  
Sbjct: 2   FENLSDKLNSVFKKLKGQGTLTEKNIDDG-LKEVRFALLEADVHYRIVKQFIADIRERAV 60

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E + +++    +  N      P  +++VG+ G GKTT   K
Sbjct: 61  GADVLESLTPGQQVIKIVYEELTRLMGETRQDLNL-TGQAPVSVMLVGLQGSGKTTTAAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G K  L   D +R AAIDQLK    +       S+ G +   +  +A   AQ
Sbjct: 120 LAVYLKKQGRKPFLVPADVYRPAAIDQLKKLGSQVQVPVFASDPGMNPVDICRQARVAAQ 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  + L++DTAGRLH +  LM  +  + + +   D      +L V DA TGQ+A+   +
Sbjct: 180 QQGCNTLLLDTAGRLHIDEALMEELVGIKQAVSPSD------ILLVADAMTGQDAVNIAQ 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+I++KMDG ARGG  + I      P+ F+GVGE  N LE F     ++ I
Sbjct: 234 SFNERLDIGGVILSKMDGDARGGAALSIKAVTGRPIKFVGVGEKTNALEAFHPDRMASSI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|312111706|ref|YP_003990022.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           Y4.1MC1]
 gi|311216807|gb|ADP75411.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           Y4.1MC1]
          Length = 330

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 189/309 (61%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+  ++ S   K  +G A T       + D+I+  R++D+   EELE++LI +D+GV 
Sbjct: 8   KEKITKQTDSVTEKFKQGLAKTRDSFAGRVNDLIARYRKVDEEFFEELEEILIGADVGVT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF-SHRPHVILVVG 118
              ++V+EL  +   +++   + +  V   +L+        KP   +       VIL VG
Sbjct: 68  TVMELVDELKMEVKRRNIQNPQEMQAVISEKLVEIYRGGDDKPAELNIQEDGLTVILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K+   G  VMLAAGDTFR+ AI+QL++W +R  A+ +    GSD 
Sbjct: 128 VNGVGKTTTIGKLAHKLKSEGKTVMLAAGDTFRAGAIEQLEVWGERVGAEVIKQTAGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+  DVL+ DTAGRL N   LM  + K+ RV++R  P APH VL VLD
Sbjct: 188 AAVIYDAIQAAKARGADVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVLLVLD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL
Sbjct: 248 ATTGQNAMSQAKTFKEATNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGEKVDDL 307

Query: 299 EPFVAKDFS 307
           +PF  + + 
Sbjct: 308 QPFDPEQYV 316


>gi|223939677|ref|ZP_03631550.1| signal recognition particle protein [bacterium Ellin514]
 gi|223891634|gb|EEF58122.1| signal recognition particle protein [bacterium Ellin514]
          Length = 449

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 151/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+    ++    ++ +        E+   L+ +D+   VA+  +E + TK   
Sbjct: 2   FDTISNKLQNAFKNLRGLGKISESNVSDSLREVRLALLEADVNFKVARDFIERVKTKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+++  + + + ++L   +   N   S  P  I++VG++G GKTT   KL
Sbjct: 62  QEVIESVHPGQQIIKIIHDELVELLGSTNAGLNL--SGNPASIMMVGLHGSGKTTSSAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K ++  G + +L A D +R AA+DQL+    +        +  +D  A+A EAF  A+A
Sbjct: 120 AKLLTKQGRQPVLVAADVYRPAAMDQLETLGKQLGIPVFLKKGETDVLAIAREAFDFARA 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              + LI DTAGRL  +  L+  + ++  ++K      P  +L VLDA TGQ A+     
Sbjct: 180 NNRNTLIFDTAGRLQIDEPLVQELVRLRDLVK------PQEILLVLDAATGQEAVNVATH 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG I+TK+DG ARGG  + +      P+   G GE + D EPF  +  ++ I 
Sbjct: 234 FDQALNITGSILTKLDGDARGGAALSMKAVTGKPIKLAGTGEKLEDFEPFHPERMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|301154660|emb|CBW14122.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Haemophilus parainfluenzae T3T1]
          Length = 463

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++      +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQKPVEIAKAALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +S +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDSEMMDEIKQVHATLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|291454407|ref|ZP_06593797.1| signal recognition particle protein [Streptomyces albus J1074]
 gi|291357356|gb|EFE84258.1| signal recognition particle protein [Streptomyces albus J1074]
          Length = 568

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 145/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +   +    E+   L+ +D+ + V +  ++++  +   
Sbjct: 54  FDTLSDRLAATFKSLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIKQVKERALG 113

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+++  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 114 EEVSKALNPAQQIIKIVNEELVGILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 172

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            K +   G   +L A D  R  A++QL + A+R        E G+   D   +A ++   
Sbjct: 173 GKWLQGQGHTPLLVAADLQRPNAVNQLSVVAERAGVGIFAPEPGNGVGDPVQVAKDSIAH 232

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+ DV+++DTAGRL  +  LM     +       D   P  VL V+DA  GQ+A+  
Sbjct: 233 ARTKQYDVVVVDTAGRLGIDQELMQQAADI------RDAVQPDEVLFVVDAMIGQDAVNT 286

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       + F   GE + D + F     ++
Sbjct: 287 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGKQIMFASNGEKLEDFDAFHPDRMAS 346

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 347 RILDMGDM 354


>gi|238923877|ref|YP_002937393.1| signal recognition particle protein [Eubacterium rectale ATCC
           33656]
 gi|238875552|gb|ACR75259.1| signal recognition particle protein [Eubacterium rectale ATCC
           33656]
 gi|291524523|emb|CBK90110.1| signal recognition particle protein [Eubacterium rectale DSM 17629]
          Length = 458

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 151/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++ S  +L +       +E++  L+ +D+   V ++  + +  +  
Sbjct: 2   AFDSLSEKLQNVFKNLRSKGKLTEDDVKAALKEVKMALLEADVNFKVVKQFTKSVQERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +    +       VI++VG+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEEMIKLMGSETTEIAFRPGKELTVIMMVGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G K +L A D +R AAI+QLKI  ++   +       +  A +A  A + A+
Sbjct: 122 IAGKLKSKGKKSLLVACDVYRPAAIEQLKINGEKQGVEVFSMGDKNKPADIAKAAVEHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRLH +  +MA + ++               + V+DA TGQ+A+    
Sbjct: 182 KNDFNVVIIDTAGRLHIDEDMMAELIEIKEATD------VFQTILVVDAMTGQDAVNVAG 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+++TK+DG  RGG  + I      P+ + G+GE ++DLE F  +  ++ I
Sbjct: 236 TFDEKIGIDGVVITKLDGDTRGGAALSIRAVTGKPILYAGMGEKLSDLEQFYPERMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|58039892|ref|YP_191856.1| cell division protein FtsY-like protein [Gluconobacter oxydans
           621H]
 gi|58002306|gb|AAW61200.1| Cell division protein FtsY-like protein [Gluconobacter oxydans
           621H]
          Length = 319

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 135/301 (44%), Positives = 203/301 (67%), Gaps = 4/301 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L +G + +S +L      + + R+LD+   EELED LI +D+G AVA++++E   
Sbjct: 3   GFFSRLKQGLSRSSSRLGA----VFTHRKLDETALEELEDELIAADLGPAVAERVIENFR 58

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + R+ KDV+   +   ++  I ++L P++ PF  D   +PHV+LVVGVNGVGKTT IGK+
Sbjct: 59  STRFGKDVTSDEIRETLATEIARVLEPVAIPFEPDPKKKPHVVLVVGVNGVGKTTTIGKM 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++  ++ G  VML AGDTFR+AA++QL++W  R +   +  + G+DAA LAY+  K+A  
Sbjct: 119 ARHYTEEGKSVMLVAGDTFRAAAVEQLEVWGKRANVPVIAGKHGADAAGLAYDGLKRATE 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D+L+IDTAGRLHN   LM  + K+IRV+++ D  APHSVL VLDATTGQNA+ QV +
Sbjct: 179 AGTDLLLIDTAGRLHNKGALMEELAKIIRVMRKFDETAPHSVLLVLDATTGQNAIEQVRV 238

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DG+ARGG ++ +    K+PV+ +GVGE   DL PF A++++  + 
Sbjct: 239 FRELVNVTGLIVTKLDGSARGGIVVALAEQFKLPVHMVGVGEQAEDLRPFSAQEYAKGLV 298

Query: 312 G 312
           G
Sbjct: 299 G 299


>gi|329955639|ref|ZP_08296547.1| signal recognition particle protein [Bacteroides clarus YIT 12056]
 gi|328526042|gb|EGF53066.1| signal recognition particle protein [Bacteroides clarus YIT 12056]
          Length = 440

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 151/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKSFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +   N D   +P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGETAEINID--SKPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++ A++            D  A+A  A ++A+
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYSEPDSKDPVAIAQNAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  +   +       P+ +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDLVIVDTAGRLAVDEEMMNEIAAIKAAIN------PNEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|291527949|emb|CBK93535.1| signal recognition particle protein [Eubacterium rectale M104/1]
          Length = 458

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 151/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++ S  +L +       +E++  L+ +D+   V ++  + +  +  
Sbjct: 2   AFDSLSEKLQNVFKNLRSKGKLTEDDVKAALKEVKMALLEADVNFKVVKQFTKSVQERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +    +       VI++VG+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEEMIKLMGSETTEIAFRPGKELTVIMMVGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G K +L A D +R AAI+QLKI  ++   +       +  A +A  A + A+
Sbjct: 122 IAGKLKSKGKKSLLVACDVYRPAAIEQLKINGEKQGVEVFSMGDKNKPADIAKAAVEHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRLH +  +MA + ++               + V+DA TGQ+A+    
Sbjct: 182 KNDFNVVIIDTAGRLHIDEDMMAELIEIKEATD------VFQTILVVDAMTGQDAVNVAG 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+++TK+DG  RGG  + I      P+ + G+GE ++DLE F  +  ++ I
Sbjct: 236 TFDEKIGIDGVVITKLDGDTRGGAALSIRAVTGKPILYAGMGEKLSDLEQFYPERMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|289435144|ref|YP_003465016.1| signal recognition particle protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171388|emb|CBH27932.1| signal recognition particle protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 450

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GTDVMKSLTPGQQVIKIVQEELTNLMGGEESKIGT-ADRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +   +D +IIDTAGRLH +  LM  + ++  +        P  +L V+D+ TGQ+A+   
Sbjct: 181 KEDHLDYVIIDTAGRLHIDETLMDELKQVKEIAN------PTEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I      P+ F+  GE +  +E F     ++ 
Sbjct: 235 ESFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFVATGEKMEAIETFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|160886334|ref|ZP_02067337.1| hypothetical protein BACOVA_04343 [Bacteroides ovatus ATCC 8483]
 gi|299146818|ref|ZP_07039886.1| signal recognition particle protein [Bacteroides sp. 3_1_23]
 gi|156108219|gb|EDO09964.1| hypothetical protein BACOVA_04343 [Bacteroides ovatus ATCC 8483]
 gi|298517309|gb|EFI41190.1| signal recognition particle protein [Bacteroides sp. 3_1_23]
          Length = 440

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 150/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +   N D   RP VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGETAEINIDA--RPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++ A++      C     +   +A  A ++A+
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYCELDSKNPVEIAQHAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  + + +       P  +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDLVIVDTAGRLAVDEQMMNEIAAIKKAIN------PDEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLEAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|189467237|ref|ZP_03016022.1| hypothetical protein BACINT_03622 [Bacteroides intestinalis DSM
           17393]
 gi|189435501|gb|EDV04486.1| hypothetical protein BACINT_03622 [Bacteroides intestinalis DSM
           17393]
          Length = 439

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 150/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKTFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +     D   +P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGETAEI--DLEGKPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AA++QL++ A++            +   +A  A ++A+
Sbjct: 120 ARMLKTKKNKKPLLVACDVYRPAAVEQLRVLAEQIGVPMYSEPDSKNPVKIAENAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I  + + +       P+ +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDVVIVDTAGRLAVDEEMMNEIAAIKKAIN------PNEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     S  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPSRMSDRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|325577819|ref|ZP_08148094.1| signal recognition particle protein [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160564|gb|EGC72690.1| signal recognition particle protein [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 463

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTNVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++      +A  A   A+
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQKPVEIAKAALADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +S +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDSEMMDEIKQVHATLN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|194333177|ref|YP_002015037.1| signal recognition particle-docking protein FtsY [Prosthecochloris
           aestuarii DSM 271]
 gi|194310995|gb|ACF45390.1| signal recognition particle-docking protein FtsY [Prosthecochloris
           aestuarii DSM 271]
          Length = 315

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 123/305 (40%), Positives = 187/305 (61%), Gaps = 6/305 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + +L  G   T   +++ I+ +   R  +D+   EELE++LI +D+GV     IV+ +  
Sbjct: 9   LSRLKDGLTKTRETIRDNISRLTQGRTEIDEEFLEELENILIAADVGVETTLSIVDRITE 68

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTV 127
           +   +    +  L + + +++ +ML+  S+     F+     +P+VIL+VGVNGVGKTT 
Sbjct: 69  RAKEETYRSEDELNNMLLQVMQEMLLDASEDHPVDFDASLPAKPYVILIVGVNGVGKTTS 128

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL+     +G KVM+AA DTFR+AA++QL+IWADR     V    G+D A++ ++A  
Sbjct: 129 IAKLAHNYHKSGKKVMIAAADTFRAAAVEQLQIWADRAGVPMVSQGQGADPASVVFDAVS 188

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A++ DV+++DTAGRLHN + LM  + K++RV K+  P APH VL VLD TTGQNA+ 
Sbjct: 189 SAVAREADVVLVDTAGRLHNKAYLMEELAKIMRVAKKKVPEAPHEVLLVLDGTTGQNAVS 248

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F      TGLI+TK+DGTA+GG ++ I     +PV ++GVGE I+DL+ F    F 
Sbjct: 249 QAREFTKCVNVTGLIITKLDGTAKGGIVLSISRDLHLPVKYIGVGEKIDDLQIFDRSKFV 308

Query: 308 AVITG 312
             + G
Sbjct: 309 GALMG 313


>gi|261415969|ref|YP_003249652.1| signal recognition particle-docking protein FtsY [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372425|gb|ACX75170.1| signal recognition particle-docking protein FtsY [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302325501|gb|ADL24702.1| signal recognition particle-docking protein FtsY [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 306

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 121/301 (40%), Positives = 188/301 (62%), Gaps = 3/301 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +     +  G A T   L   +  I+ + ++ D   EELE+ LI++D+GV  A  + + L
Sbjct: 1   MGLFSAIKSGLAKTRDALLGELKGIVGAGKITDETLEELEEHLIKADVGVEAAFLLTDAL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                 K ++ ++VL  +     ++L     P  ++   +PHV+LV+GVNG GKTT IGK
Sbjct: 61  RENALGKSLTTEQVLDIMRNEAERLLKD---PPPFELKGKPHVVLVIGVNGAGKTTTIGK 117

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++ + G KVM+AA DTFR+AAIDQL+ WA R+ A+FV  + GSD AA+AY+A   A 
Sbjct: 118 LAARLKNEGKKVMIAACDTFRAAAIDQLETWAQRSGAEFVKHQEGSDPAAVAYDACSAAV 177

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DV++IDTAGRLHN   LM  + K++RV+K++ P  PH +  V+D  TGQN + Q +
Sbjct: 178 ARGCDVVLIDTAGRLHNKDYLMEELKKIVRVIKKVSPDMPHDMWLVIDGNTGQNTINQTK 237

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+     TGL++TK+DGTARGG ++ I  + +IP+ ++G+GE I+ L  F  +D+   +
Sbjct: 238 IFNQSFPLTGLVVTKLDGTARGGSVLSIASSLQIPIRWVGMGERIDQLVEFNKRDYVDGL 297

Query: 311 T 311
            
Sbjct: 298 F 298


>gi|298490713|ref|YP_003720890.1| signal recognition particle-docking protein FtsY ['Nostoc azollae'
           0708]
 gi|298232631|gb|ADI63767.1| signal recognition particle-docking protein FtsY ['Nostoc azollae'
           0708]
          Length = 518

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/313 (32%), Positives = 176/313 (56%), Gaps = 5/313 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + ++ E ++W++KL +G   T   +   +  I+    L+     E+E LL+++D+GV   
Sbjct: 204 EDISMEEITWLKKLRQGLDKTRRNILNQLKAIVGQGPLNQAAVSEIEALLLQADVGVEAT 263

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGV 119
             +++ L  K   +  +    +  + +++  ML   +K               + L+ GV
Sbjct: 264 DFMIDALQKKLRDEVTAPDEAIAYLKKILRDMLDAPNKATEKSTFAPEKDNLSIWLITGV 323

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGK++     +G K ++ A DTFR+AA++Q+K+W  R+  + + +    +D 
Sbjct: 324 NGAGKTTTIGKIAHLAHKSGYKCLIGAADTFRAAAVEQVKVWGSRSGVEVIANPGQNTDP 383

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQ++  ++L+IDTAGRL N   LM  + K+ R++ +  P+     L VLD
Sbjct: 384 AAVVFDAITAAQSRGTELLLIDTAGRLQNKRNLMDELSKIRRIIDKKAPNIHVESLLVLD 443

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +T GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G GEGI DL
Sbjct: 444 STLGQNGLRQAEVFSQAAQVSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 503

Query: 299 EPFVAKDFSAVIT 311
            PF + +F   + 
Sbjct: 504 RPFSSYEFVEALL 516


>gi|189425506|ref|YP_001952683.1| signal recognition particle protein [Geobacter lovleyi SZ]
 gi|189421765|gb|ACD96163.1| signal recognition particle protein [Geobacter lovleyi SZ]
          Length = 463

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+     +     + +D +++ L +    L+ +D+   V +  VE +  K   
Sbjct: 2   FDNLSDKLESVFKKLRGQGVMTEDNIKDALREVRLALLEADVNFKVVKDFVENVRLKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV-VGVNGVGKTTVIGK 130
            +V       Q+V+  V + +  ++    +  N D + +P V+L+ VG+ G GKTT  GK
Sbjct: 62  TEVMQSLAPGQQVVRIVHDELITLMGG-DQDNNLDLAAKPPVVLMLVGLQGAGKTTTCGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L   +     + +L   D +R AAI+QLK    + + D   S+ G +   +   A + A+
Sbjct: 121 LGSWLRKQKRRPLLVPADVYRPAAIEQLKTVGRQLNIDVFDSQTGQEPVDICSAAVRFAE 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D +++DTAGR   +  LM  + ++           P  +L V DA TGQ A+    
Sbjct: 181 LNGFDTVLLDTAGRHQIDDFLMNELERIKAA------AQPREILFVADAMTGQEAVTVAG 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+I++K+DG A+GG  + I      PV F+G+GE ++ LE F      + I
Sbjct: 235 GFNDRLGITGVILSKLDGDAKGGAALSIKAVTGAPVKFVGLGEKLDALEVFHPDRLVSRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|170723319|ref|YP_001751007.1| signal recognition particle protein [Pseudomonas putida W619]
 gi|169761322|gb|ACA74638.1| signal recognition particle protein [Pseudomonas putida W619]
          Length = 458

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P V+L+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLALNAA-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++  + D +R AAI QL+  A+     F  S+I     A+A  A ++A+
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH ++ +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHIDADMMDEIKALHAAVK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|116671035|ref|YP_831968.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrobacter
           sp. FB24]
 gi|116611144|gb|ABK03868.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrobacter
           sp. FB24]
          Length = 529

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 145/314 (46%), Gaps = 26/314 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLTEADVDATVREIRRALLDADVAVPVVREFTGRVRERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E + ++L   ++         P +I++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPSQQIVKIVNEELVEILGGETRRIRL-AKTGPTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC----------SEIGSDAAAL 181
           SK +   G   ML A D  R  A++QL++   R                      D  A+
Sbjct: 121 SKWLKSQGHSPMLVACDLQRPNAVNQLQVVGQRAGVPVFAPHPGATSMELDHPAGDPVAV 180

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A    ++A+ K  DV+I+DTAGRL  ++ +M    ++ R +       P+ VL V+D+  
Sbjct: 181 ARAGVEEARQKLHDVVIVDTAGRLGVDAEMMEQARQIRRAI------VPNEVLFVIDSMI 234

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+A+     F      TG++++K+DG ARGG  + +      PV F   GEG++D E F
Sbjct: 235 GQDAVNTALAFDEGVNFTGIVLSKLDGDARGGAALSVASVTGKPVMFASTGEGVDDFELF 294

Query: 302 VAKDFSAVITGCLD 315
                ++ I    D
Sbjct: 295 HPDRMASRILDMGD 308


>gi|224539094|ref|ZP_03679633.1| hypothetical protein BACCELL_03995 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519284|gb|EEF88389.1| hypothetical protein BACCELL_03995 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 439

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 150/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKTFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +     D   +P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGETAEI--DLEGKPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++ A++            +   +A  A ++A+
Sbjct: 120 ARMLKTKKNKKPLLVACDVYRPAAIEQLRVLAEQIGVPIYSEPDSKNPVKIAENAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I  + + +       P+ +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDVVIVDTAGRLAVDEEMMNEIAAIKKAIN------PNEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     S  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPSRMSDRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|291615196|ref|YP_003525353.1| signal recognition particle protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291585308|gb|ADE12966.1| signal recognition particle protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 450

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   + ++    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   LDNLTQRLSGIVKNLRGQARLTESNIQDALREVRLALLEADVALPVVKEFIAKVKDAALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V+  + K++   +   N      P VIL+ G+ G GKTT  GKL
Sbjct: 62  QEVIGNLQPGQALIGVVNRELTKLMGEHNDALNLAAV-PPAVILMAGLQGAGKTTSSGKL 120

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K +L  + D +R AAI+QL++ A +   DF  S+       +A  A   A+
Sbjct: 121 AKLLREQNKKKVLLVSCDVYRPAAIEQLRMLAQQLDVDFFPSDASQKPQDIALAAHDFAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRL  +  +MA I  +   LK      P   L V+DA TGQ+A+   +
Sbjct: 181 KHHHDVLIVDTAGRLAVDEAMMAEIKDLHAALK------PIETLFVVDAMTGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F+GV E  N LE F  +  +  I
Sbjct: 235 AFGDALPLTGVILTKLDGDARGGAALSVRQVTGKPIKFVGVSEKPNGLEAFHPERMAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|238063297|ref|ZP_04608006.1| signal recognition particle protein [Micromonospora sp. ATCC 39149]
 gi|237885108|gb|EEP73936.1| signal recognition particle protein [Micromonospora sp. ATCC 39149]
          Length = 527

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 144/307 (46%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L    T +    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDTLSDRLSGIFTKLRGKGRLTDADIDATAREIRLALLEADVALPVVKGFIANVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L    +   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQIVKIVNEELINVLGGEGRRLQF-AKQPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---GSDAAALAYEAFKQ 188
           ++ +   G + +L A D  R  A+ QL++   R   +    E      D   +A  + + 
Sbjct: 121 ARWLKAQGHQPLLVAADLQRPNAVGQLQVLGGRAGVEVYAPEPGNGTGDPVQVARASIEH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    D++I+DTAGRL  ++ +M     +       D   P  V+ V+DA  GQ+A+R 
Sbjct: 181 AKRAARDIVIVDTAGRLGIDAEMMRQAADI------RDAVNPDEVIFVIDAMVGQDAVRT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G TG++++K+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGITGVVLSKLDGDARGGAALSVREVTGQPILFASTGEKLEDFDVFHPDRMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|94987017|ref|YP_594950.1| Signal renition particle GTPase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731266|emb|CAJ54629.1| Signal renition particle GTPase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 504

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 148/306 (48%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  I    +L +D +R+ L +    L+ +D+   V +K +E +  K   
Sbjct: 2   FESLSERLSSVLHAIGKRGQLTEDNIRDGLREVRLALLEADVNFNVVKKFIEHVKEKVVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGK 130
           + +       Q+ +    E +  +L    K    D +H P  VI++VG+ G GKTT  GK
Sbjct: 62  QAIEKHLTPAQQFIKVFHEELVNLLGG--KSTKLDVTHFPLSVIMLVGLQGSGKTTSTGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   GL+  L   D +R AAI+QL+  A + +     S        +   A  +A+
Sbjct: 120 LASLLQSQGLRPYLVPVDIYRPAAIEQLQTLATQLNIPCFASNAAMKPLDIINAALHEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K+  V+++DTAGRLH +  LM  +  +  V        P  +L V DA TGQ+ +   E
Sbjct: 180 EKEYTVVLLDTAGRLHIDEPLMQELTDIKLV------AHPQEILFVADAMTGQDVVTVAE 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG I+TKMDG ARGG  + I  +  +PV ++G GE ++D E F     +  I
Sbjct: 234 EFNKKLSLTGAILTKMDGDARGGAALSICSSTGVPVKYVGTGEKLSDFEVFHPDRIAGRI 293

Query: 311 TGCLDY 316
            G  D 
Sbjct: 294 LGMGDM 299


>gi|19746132|ref|NP_607268.1| signal recognition particle -inhibited division protein
           [Streptococcus pyogenes MGAS8232]
 gi|19748308|gb|AAL97767.1| putative signal recognition particle -inhibited division protein
           [Streptococcus pyogenes MGAS8232]
          Length = 520

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       +++L  V+E +  +L   +   +      P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTKQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENHNDYVLIDTAGRLQIDEKLMEELRDVKAL------AQPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 YEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGERITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|167627998|ref|YP_001678498.1| signal recognition particle protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597999|gb|ABZ87997.1| signal recognition particle protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 458

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L +        ++   L+ +D+ + V +K +E +  K   
Sbjct: 2   FTSLSDKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIENIKQKAIG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I + L   + P N   +  P +IL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIERALGEEAVPINLK-TQPPAIILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +  EA + A+
Sbjct: 121 AKYLKEQYKKKVMVVSADVYRPAAIDQLRTLANSLNIEFFESDTSQKPDYIVTEAIRAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH +S +M  I ++ ++        P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDSNMMDEIKQIHKIAN------PIETFFTVDSMTGQDAAITAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLG GE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGTGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|304440220|ref|ZP_07400110.1| signal recognition particle protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371269|gb|EFM24885.1| signal recognition particle protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 445

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 149/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+  ++ +    +L +   +    E+   L+ +D+   V +   +++  +   
Sbjct: 3   FESLSDKLQNTLSKLRGKGKLTEKDIDLAMREVRLALLEADVNFKVVKDFTKKVKERALG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V+E +  ++         D S  P V ++ G+ G GKTT  GKL
Sbjct: 63  SEVLESLTPGQQVIKIVNEELKTLMGEGES--KLDLSKNPSVFVMAGLQGAGKTTTSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +M   G + +L A D +R AAI QL++  +             +   +A  + + A+ 
Sbjct: 121 ALQMKKRGKRPLLVACDVYRPAAIKQLQVVGEGIDVPVFTMGDKINPVDIAKASIEHAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRLH +  LM     ++ ++K +DP      L VLDA TGQ+A+   E 
Sbjct: 181 NGNDVVIIDTAGRLHVDENLMDE---LLNIVKSVDP---QEKLLVLDAMTGQDAVNVTES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG ARGG  + +     +P+ F+ +GE ++ LE F     S  I 
Sbjct: 235 FAEKLDLTGVILTKLDGDARGGAALSLRAVTDVPIKFISLGEKMDSLEVFYPDRMSNRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|330466283|ref|YP_004404026.1| signal recognition particle protein [Verrucosispora maris
           AB-18-032]
 gi|328809254|gb|AEB43426.1| signal recognition particle protein [Verrucosispora maris
           AB-18-032]
          Length = 515

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L    T +    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDTLSDRLSGIFTKLRGKGRLTDADIDATAREIRLALLEADVALPVVKGFIANVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L    +   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQIIKIVNEELVTVLGGEGRRLQF-AKQPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++ +   G + +L A D  R  A+ QL++   R   +    E G+   D   +A  + + 
Sbjct: 121 ARWLKAQGHQPLLVAADLQRPNAVGQLQVLGGRAGVEVYAPEPGNGVGDPVQVAKASLEH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+I+DTAGRL  ++ +M     +       D   P  V+ V+DA  GQ+A+R 
Sbjct: 181 ARRAARDVVIVDTAGRLGIDAEMMQQAADI------RDAVDPDEVIFVIDAMVGQDAVRT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G TG++++K+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGITGVVLSKLDGDARGGAALSVREVTGQPILFASTGEKLEDFDVFHPDRMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|241668552|ref|ZP_04756130.1| signal recognition particle protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877087|ref|ZP_05249797.1| signal recognition particle protein ffh [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843108|gb|EET21522.1| signal recognition particle protein ffh [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 458

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L +        ++   L+ +D+ + V +K +E +  K   
Sbjct: 2   FTSLSDKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIENIKQKAIG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I + L   + P N   +  P +IL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIERALGEEAVPINLK-TQPPAIILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +  EA + A+
Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNIEFFESDTSQKPDYIVTEAIRAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH +S +M  I ++ ++        P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDSNMMDEIKQIHKIAN------PIETFFTVDSMTGQDAAITAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLG GE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGTGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|217964047|ref|YP_002349725.1| signal recognition particle protein [Listeria monocytogenes HCC23]
 gi|217333317|gb|ACK39111.1| signal recognition particle protein [Listeria monocytogenes HCC23]
 gi|307571383|emb|CAR84562.1| signal recognition particle protein [Listeria monocytogenes L99]
          Length = 450

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GADVLKSLTPGQQVIKIVQEELTSLMGGEESKIGT-ADRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFFLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  +        P  +L V+D+ TGQ+A+   
Sbjct: 181 KEEHLDYVIIDTAGRLHIDETLMDELKQVKEIAT------PTEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+  GE +  LE F     ++ 
Sbjct: 235 QSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|332799152|ref|YP_004460651.1| signal recognition particle protein [Tepidanaerobacter sp. Re1]
 gi|332696887|gb|AEE91344.1| signal recognition particle protein [Tepidanaerobacter sp. Re1]
          Length = 445

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 18/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL +    +    +L +       +E+   L+ +D+   V + ++ ++  +  
Sbjct: 2   AFESLTQKLNDIFKKLRGKGKLSEADVKQAMKEVRLALLEADVNFKVVKDLISKITERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E +  ++   S     DFS    +I++VG+ G GKTT  GK
Sbjct: 62  GQEVMESLTPAQQVIKIVNEELTSLMG--STQSKVDFSKEITIIMLVGLQGSGKTTTAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L K +S  G K +L A D +R AAI QLKI  ++            D   ++  +   A+
Sbjct: 120 LGKLLSKNGKKPLLVAADIYRPAAITQLKIVGEKVGLPVFTMG-QQDPVDISKASVDYAK 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+IIDTAGRLH +  LM     ++ +   +DP     +L V+D+ TGQ+A+   E
Sbjct: 179 KHNHDVVIIDTAGRLHVDDDLMNE---LVNISHAVDPS---EILLVVDSMTGQDAVNVAE 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TGLI+TK+DG +RGG  + +      P+ ++G+GE ++DLE F  +  ++ I
Sbjct: 233 EFNNRLQLTGLILTKLDGDSRGGAALSVKAVTGCPIKYVGMGEKLDDLEIFHPERMASRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|302381440|ref|YP_003817263.1| signal recognition particle-docking protein FtsY [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192068|gb|ADK99639.1| signal recognition particle-docking protein FtsY [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 312

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 129/310 (41%), Positives = 192/310 (61%), Gaps = 3/310 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +    W ++L+ G A +S ++ E +        L +   + LE+ L+ SD+G A   +IV
Sbjct: 4   TPKKGWFQRLSAGLARSSQQMTETVVGTFVKEPLSEAALDRLEEHLLESDLGPAATDRIV 63

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH--RPHVILVVGVNGVGKT 125
                 R+ K VS +R + +         +   +      S   +P+V+L VGVNG GKT
Sbjct: 64  ARFRELRFGK-VSDEREVKEALAEAVAAELLPRQATFDPLSEGIKPYVVLFVGVNGSGKT 122

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GK++  ++  G +VM+ AGDTFR+AA +QLK+WA+R  ADF     G+D A LA++A
Sbjct: 123 TTLGKIAADLTGKGARVMIVAGDTFRAAAREQLKVWAERAGADFESRRDGADPAGLAFDA 182

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           + +A+A+  DV++IDTAGRL N S LM  + K++RVLK++DP APH  L VLDAT G+NA
Sbjct: 183 YTKARAENYDVILIDTAGRLQNKSALMDELLKIVRVLKKIDPDAPHETLLVLDATVGRNA 242

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q ++F   A  +GL+MTK+DGTARGG L+P+      P+  +GVGEGI+DL+PF A+ 
Sbjct: 243 LAQEQIFGRTAFVSGLVMTKLDGTARGGVLVPVAQASDAPIKLIGVGEGIDDLQPFDARA 302

Query: 306 FSAVITGCLD 315
           F+  + G  D
Sbjct: 303 FARSLVGLED 312


>gi|169830839|ref|YP_001716821.1| signal recognition particle protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637683|gb|ACA59189.1| signal recognition particle protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 452

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            FA  S +L+E    +    +L +        E+   L+ +D+   V +  V  +  +  
Sbjct: 2   AFAGLSERLQETFKKLRGKGKLTEEDVNQALREVRLALLEADVNFKVVRNFVNVVRQRAT 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E +  ++   +          P V+++VG+ G GKTT + K
Sbjct: 62  GQDVMASLTPAQQVVKIVHEELTALMGGQNARLEL-APKPPTVVMLVGLQGSGKTTTVAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G + +L A D +R AAI QL++   +            D  ++A  A +  +
Sbjct: 121 LANLLKKQGRRPLLVAADVYRPAAIKQLQVLGGQIDVPVFSMGE-QDPVSIAGAALESTR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+IIDTAGRLH N  LM  + ++   ++      PH +L V+DA TGQ+A+   E
Sbjct: 180 KGGQDVVIIDTAGRLHINEELMVELERIKAGVQ------PHEILLVVDAMTGQDAVTVAE 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH      G+I+TK+DG  RGG  + +      P+ F+G+GE ++ LEPF     +  I
Sbjct: 234 SFHQRLVLDGVILTKLDGDTRGGAALSVRAVTGCPIKFVGIGEKLDALEPFHPNRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|312793157|ref|YP_004026080.1| signal recognition particle protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312878372|ref|ZP_07738282.1| signal recognition particle protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311794857|gb|EFR11276.1| signal recognition particle protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312180297|gb|ADQ40467.1| signal recognition particle protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 443

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S S KL++    +    +L +       +E++  L+ +D+   V +  +  +  K   
Sbjct: 2   FSSLSEKLQDVFKRLKGKGKLTEKDIKDAMKEVKLALLEADVNYKVVKDFINTVTQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + +  +L        +  S    + ++VG+ G GKTT  GKL
Sbjct: 62  EEVLESLTPAQQVIKIVYDEMVNLLGGSDTKLTFSPSGF-SIYMMVGLQGSGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL++ A +            DA  +A E  + A+A
Sbjct: 121 AGLLKKQGKNPLLVACDIYRPAAIKQLEVVAQKVGVKCFADYNSKDAVKIAKEGIEFAKA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            + DV I+DTAGRLH N  LM  +  +   +K      P  +L VLDA TGQ+A+     
Sbjct: 181 NRCDVAIVDTAGRLHINQELMDELVSIKNAIK------PTEILLVLDAMTGQDAVNVATA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+IMTK+DG  RGG  + +      P+ F GVGE + DLE F     ++ I 
Sbjct: 235 FNEQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVGEKMEDLEAFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|319790268|ref|YP_004151901.1| signal recognition particle protein [Thermovibrio ammonificans
           HB-1]
 gi|317114770|gb|ADU97260.1| signal recognition particle protein [Thermovibrio ammonificans
           HB-1]
          Length = 448

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 150/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +++  I  I    R+D         E++  L+ +D+   V  K + ++  K   
Sbjct: 2   FDALAERVQSAIEKIGRKGRIDQETLNKGLREIKLALLEADVNYKVVSKFINDIKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+++  V + + + L    +    +   +P VIL++G+ G GKTT   KL
Sbjct: 62  AEVVKGVNPAQQLVKIVYDELVEALGG--EGAKLELKSKPAVILLIGLQGSGKTTTAAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G KV+L + D +R AA+ QLK   D+        E   DA  +A +A K+A+ 
Sbjct: 120 ANYLKKQGKKVLLTSADVYRPAAMLQLKKLGDKIGVPVFLEEDEKDAVKIAKDALKKAKE 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVLIIDTAGRLH +  L+    ++           P  VL V+DA TGQ ++   + 
Sbjct: 180 ENYDVLIIDTAGRLHIDEELLEEAKRIKE------ETNPDEVLFVIDAMTGQESVNIAKA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+++TKMD  ARGG  + +      P+ F GVGE I D +PF     ++ I 
Sbjct: 234 FNEAVGMTGIVLTKMDSDARGGVALSVKGVTGKPIKFAGVGEKIEDFQPFYPDRVASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|302554422|ref|ZP_07306764.1| signal recognition particle protein [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472040|gb|EFL35133.1| signal recognition particle protein [Streptomyces viridochromogenes
           DSM 40736]
          Length = 545

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  ++ L  +   
Sbjct: 31  FDTLSDRLSATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRTFIKNLKERALG 90

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+VL  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 91  AEVSRALNPAQQVLKIVNEELVTILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 149

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + + + G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 150 GRWLKEQGHSPLLVAADLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEH 209

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  D++I+DTAGRL  +  +M     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 210 ARTKVHDIVIVDTAGRLGIDQEMMQQAADI------RDAVSPDEILFVVDAMIGQDAVNT 263

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I      P+ F   GE ++D + F     ++
Sbjct: 264 AEAFRDGVGFDGVVLSKLDGDARGGAALSIRQITGKPIMFASNGEKLDDFDAFHPDRMAS 323

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 324 RILDMGDL 331


>gi|182417247|ref|ZP_02948600.1| signal recognition particle protein [Clostridium butyricum 5521]
 gi|237668219|ref|ZP_04528203.1| signal recognition particle protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378893|gb|EDT76406.1| signal recognition particle protein [Clostridium butyricum 5521]
 gi|237656567|gb|EEP54123.1| signal recognition particle protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 452

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F     KL+E    +    +L +  ++E + +    L+ +D+   V +  V  + +K  
Sbjct: 2   AFEGLGEKLQETFRKLKGKGKLTEKDIKEAMREVKLALLEADVNYKVVKTFVSNVSSKCV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E +  ++       +++ S  P VI++VG+ G GKTT+ GK
Sbjct: 62  GSEVLESLTPGQQVIKIVNEELTNLMGGSESKLSYN-SSGPTVIMLVGLQGAGKTTMCGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +     K +L A D +R AAI QL++   +                +A      A+
Sbjct: 121 LALNLRKDNKKPLLVACDIYRPAAIKQLEVVGKQIEIPVFSMGDKVSPVDIAKAGIAHAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++IIDTAGRLH +  LM  +  +   +K      P  +L V+D+ TGQ+A+   E
Sbjct: 181 DNGNNIVIIDTAGRLHIDEDLMQELKDIKENVK------PSEILLVVDSMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG  RGG  + I      P+ ++G+GE +ND E F     ++ I
Sbjct: 235 NFNNDLDLSGVILTKLDGDTRGGAALSIKSIINKPIKYVGLGEKMNDFEVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|291535144|emb|CBL08256.1| signal recognition particle protein [Roseburia intestinalis M50/1]
 gi|291539673|emb|CBL12784.1| signal recognition particle protein [Roseburia intestinalis XB6B4]
          Length = 360

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 153/305 (50%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++ S  RL +       +E++  L+ +D+   V ++ V+++  +  
Sbjct: 2   AFDSLSEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKQFVKDVQERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + +++   +            +I++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEEMVRLMGSETTEIALRPGKELTIIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G KV+LAA D +R AAI+QL+I  ++   +       +    +A  A + A 
Sbjct: 122 IAGKLKAKGKKVLLAACDVYRPAAIEQLQINGEKQGVEVFSMGDKNTPVNIAKAAVEHAT 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +VLIIDTAGRLH +  +MA + ++   +      A    + V+DA TGQ+A+   +
Sbjct: 182 KNDFNVLIIDTAGRLHVDEDMMAELIQIKENV------AVSQTILVVDAMTGQDAVNVAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+++TK+DG  RGG  + I      P+ + G+GE ++DLE F     ++ I
Sbjct: 236 TFDEKIGIDGVVLTKLDGDTRGGAALSIRAVTGKPILYAGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|212704579|ref|ZP_03312707.1| hypothetical protein DESPIG_02641 [Desulfovibrio piger ATCC 29098]
 gi|212671978|gb|EEB32461.1| hypothetical protein DESPIG_02641 [Desulfovibrio piger ATCC 29098]
          Length = 876

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 189/316 (59%), Gaps = 5/316 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +    E      K+++G + T  +    +  + SS   L++   EELE+L I +D+G   
Sbjct: 563 EDEEDERSRLFLKISEGLSRTREQFSRRLDSLFSSHGELNESFWEELEELFIMADLGYEP 622

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNG 121
           + ++VE L  +   ++V+    + DV  L+   +  + + P      + P V+L +GVNG
Sbjct: 623 SLELVERLRERARKENVT---RVEDVRGLLMAEVDEIFRLPRRISAVNPPEVVLFIGVNG 679

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT I KL+ +    G KVM+AA DTFR+AAI+QL++WA+R  A F     GSD A++
Sbjct: 680 VGKTTTIAKLAHRARMQGKKVMIAAADTFRAAAIEQLQVWAERVGALFHARPAGSDPASV 739

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AYEA  +A A+KVD+L +DTAGRL     LM  + K+ +VL +    APH  + V+DATT
Sbjct: 740 AYEAMDRALAEKVDILFVDTAGRLQTKVNLMEELTKIRQVLGKKHEGAPHRCILVIDATT 799

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q ++F   AG   LI+TK+DGTA+GG  I + +  K+P+ ++G+GE + DL PF
Sbjct: 800 GQNALSQAKLFKEAAGVDELILTKLDGTAKGGVAIAVAMQEKLPITYVGLGEKLEDLRPF 859

Query: 302 VAKDFSAVITGCLDYG 317
              D++  + G LD G
Sbjct: 860 NGADYARALLGDLDQG 875


>gi|149925749|ref|ZP_01914013.1| signal recognition particle-docking protein FtsY(cell division
           protein) [Limnobacter sp. MED105]
 gi|149825866|gb|EDM85074.1| signal recognition particle-docking protein FtsY(cell division
           protein) [Limnobacter sp. MED105]
          Length = 313

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 187/310 (60%), Gaps = 7/310 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++  +   W+ +L  G   T      G+T + +  ++D+   EE+E+ L+ +D G+   +
Sbjct: 2   QIPGQRQDWLGRLKSGLTKTR----SGLTSMFTGEKVDEAFFEEMEERLLLADCGLPATE 57

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +++++    Y K ++    +  V  + +  +L PL      D + RP +++VVGVNG G
Sbjct: 58  LLMQKVRDTVYQKGLTRPEDVRLVLRDAVFDLLRPLETSMGVDRA-RPLIMMVVGVNGAG 116

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+   ++ G  V+LAAGDTFR+AA +QL +WA R++ D + S  GSD  A+A+
Sbjct: 117 KTTSIGKLANHYAEIGYSVLLAAGDTFRAAAREQLDVWAQRSNVDVI-SAEGSDPGAVAF 175

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           ++ +   ++   ++I DTAGRL     LM  + K+ +VL +    APH ++ V+DAT GQ
Sbjct: 176 DSVQAGISRNKHIVICDTAGRLPTQLHLMEELKKIKKVLGKAKMDAPHEIVLVVDATNGQ 235

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL+Q++ F+     T L++TK+DGTA+GG L  + ++ ++PV F+GVGE + DL PF  
Sbjct: 236 NALQQIKAFNDALTLTALVVTKLDGTAKGGILAAMSMSTRVPVAFIGVGEKMGDLRPFSP 295

Query: 304 KDFSAVITGC 313
           ++F+  + G 
Sbjct: 296 REFANALVGI 305


>gi|51246651|ref|YP_066535.1| signal recognition particle protein (SRP54) [Desulfotalea
           psychrophila LSv54]
 gi|50877688|emb|CAG37528.1| probable signal recognition particle protein (SRP54) [Desulfotalea
           psychrophila LSv54]
          Length = 480

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 152/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L+     +    +L +        E+   L+ +D+   VA++ V  +  K   
Sbjct: 30  FENLTDRLEGVFKKLRGHGKLTEDNIQDAMREVRIALLDADVSFKVAKQFVASVTEKAIG 89

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+++  V E +  +L   +     D    P VI++ G+ G GKTT  GKL
Sbjct: 90  REVGKSLSPGQQIIKIVHEELVSLLGGDTAQIELDGRQ-PVVIMMAGLQGSGKTTTSGKL 148

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K + D G +  L   D +R AAI+QL++  DR       S   +    +  +A  +A+ 
Sbjct: 149 AKMLKDKGRRPYLVPADVYRPAAIEQLQVLGDRLDVPVHPSTTATKPVDICTQAIAEAKI 208

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  D +IIDTAGRLH +++LM  + ++   ++         +L V DA TGQ+A+   + 
Sbjct: 209 KNYDTVIIDTAGRLHVDNVLMGELQEIQAAVQ------LSEILFVADAMTGQDAVTVADK 262

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     +G+I+TKM+G ARGG  + I      P+ F+GVGE ++ LE F  +  ++ I 
Sbjct: 263 FNTDLEISGIILTKMEGDARGGAALSIKTVTGKPIKFVGVGEALDALEVFHPERVASRIL 322

Query: 312 GCLD 315
           G  D
Sbjct: 323 GMGD 326


>gi|260588640|ref|ZP_05854553.1| signal recognition particle-docking protein FtsY [Blautia hansenii
           DSM 20583]
 gi|331082009|ref|ZP_08331137.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|260541115|gb|EEX21684.1| signal recognition particle-docking protein FtsY [Blautia hansenii
           DSM 20583]
 gi|330405604|gb|EGG85134.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 317

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 120/316 (37%), Positives = 183/316 (57%), Gaps = 4/316 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQK 65
             E   + ++L +G + T   +  GI  I S    +DD   EE+E++L+  D+G+     
Sbjct: 4   GKEKKGFFKRLVEGLSKTRENIVSGIDSIFSGYSSIDDDFYEEIEEILVMGDLGINTTTA 63

Query: 66  IVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I+E L  +   + +         + + I + +        ++F +R  VILV+GVNGVGK
Sbjct: 64  IIERLKEQVSKQHIKEPMECKKLLMDSIKEQMQ--VGETAYEFENRKSVILVIGVNGVGK 121

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT +GKL+ K+   G KV++AA DTFR+AA +QL  WA+R   + +  + G+D A++ Y+
Sbjct: 122 TTSVGKLAGKLKGQGKKVIMAAADTFRAAAGEQLTQWANRAGVELIGGQDGADPASVVYD 181

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A    +A+  DVLI DTAGRLHN   LM  + K+ R++++  P A    L VLD TTGQN
Sbjct: 182 AIAATKARNADVLICDTAGRLHNKKNLMEELRKIYRIIEKEYPEAYLETLVVLDGTTGQN 241

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q   F+ VA  TG+I+TK+DGTA+GG  + I     IPV ++GVGEGI+DL+ F + 
Sbjct: 242 ALAQARQFNEVANVTGIILTKLDGTAKGGIAVAIQSELDIPVKYIGVGEGIDDLQKFNSD 301

Query: 305 DFSAVITGCLDYGEEK 320
           +F   +    +  +E 
Sbjct: 302 EFVNALFNMENNTQED 317


>gi|114048412|ref|YP_738962.1| signal recognition particle protein [Shewanella sp. MR-7]
 gi|113889854|gb|ABI43905.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           sp. MR-7]
          Length = 457

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   + K +   ++  +   +  P V+++ G+ G GKTT + KL
Sbjct: 62  QEVAKSLSPGQAFIKIVQSELEKSMGEANQALDL-ATQPPAVVMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +     K + + + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|113971174|ref|YP_734967.1| signal recognition particle protein [Shewanella sp. MR-4]
 gi|117921457|ref|YP_870649.1| signal recognition particle protein [Shewanella sp. ANA-3]
 gi|113885858|gb|ABI39910.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           sp. MR-4]
 gi|117613789|gb|ABK49243.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           sp. ANA-3]
          Length = 457

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   + K +   ++  +   +  P V+++ G+ G GKTT + KL
Sbjct: 62  QEVAKSLSPGQAFIKIVQSELEKSMGEANQALDL-ATQPPAVVMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +     K + + + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|160938004|ref|ZP_02085361.1| hypothetical protein CLOBOL_02897 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438998|gb|EDP16753.1| hypothetical protein CLOBOL_02897 [Clostridium bolteae ATCC
           BAA-613]
          Length = 317

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 130/317 (41%), Positives = 184/317 (58%), Gaps = 4/317 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +A     +  +L +G A T   +  GI  I S    +DD   EE+E+ LI  D+G+    
Sbjct: 1   MAEGRKGFFGRLVEGLAKTRSNIVSGIDSIFSGFSAIDDDFYEEIEETLIMGDLGIQTTM 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVG 123
            IVE+L  K   + +       ++  LI+ +   +      ++F HR  V+LV+GVNGVG
Sbjct: 61  SIVEDLRKKVKEQHIREPEECKEL--LINSIKEQMDLGENAYEFEHRKSVVLVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ ++ D G +V+LAA DTFR+AAI+QL  WA R   + +  + GSD AA+ Y
Sbjct: 119 KTTSVGKLAGQLKDDGRRVILAAADTFRAAAIEQLTEWASRAGVELIAQQEGSDPAAVIY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+++K DVLI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQ
Sbjct: 179 DAVAAAKSRKADVLICDTAGRLHNKKNLMEELKKINRIIDKEYPDAYRETLVVLDGTTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F  VA  TG+I+TK+DGTA+GG  + I     IPV ++G+GE I+DL+ F A
Sbjct: 239 NALAQARQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYIGIGEKIDDLQKFNA 298

Query: 304 KDFSAVITGCLDYGEEK 320
            DF   +       EE 
Sbjct: 299 DDFVNALFHVQKQAEEN 315


>gi|150016059|ref|YP_001308313.1| signal recognition particle protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149902524|gb|ABR33357.1| signal recognition particle protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 450

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 144/305 (47%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F     KL+E    +    +L +  ++E + +    L+ +D+   V ++ +  + +K  
Sbjct: 2   AFEGLGEKLQETFRKLKGKGKLTEKDIKEAMREVKLALLEADVNYKVVKQFISSVSSKCV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q V+  V+E +  ++       N+  S    VI++VG+ G GKTT+ GK
Sbjct: 62  GSEVLESLTPGQHVIKIVNEELTNLMGGTESKLNYS-SSGLTVIMLVGLQGAGKTTMCGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +     K +L A D +R AAI QL++   +                +A  A   A+
Sbjct: 121 LALNLRKNNKKPLLVACDIYRPAAIKQLEVVGKQIEIPVFSMGDKVSPVEIAKNAITHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRLH +  LM  +  +       D   P  +L V+DA TGQ+A+   E
Sbjct: 181 DNGNNVVIIDTAGRLHIDEELMQELKNIK------DNVNPSEILLVVDAMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG  RGG  + I      P+ + GVGE +ND E F     ++ I
Sbjct: 235 NFNNDLDLSGVILTKLDGDTRGGAALSIKTIIDKPIKYAGVGEKMNDFEVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|120599794|ref|YP_964368.1| signal recognition particle protein [Shewanella sp. W3-18-1]
 gi|146292270|ref|YP_001182694.1| signal recognition particle protein [Shewanella putrefaciens CN-32]
 gi|120559887|gb|ABM25814.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           sp. W3-18-1]
 gi|145563960|gb|ABP74895.1| signal recognition particle subunit FFH/SRP54 (srp54) [Shewanella
           putrefaciens CN-32]
          Length = 457

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   + K +   ++  +   +  P V+++ G+ G GKTT + KL
Sbjct: 62  QEVAKSLSPGQAFIKIVQSELEKSMGEANEALDL-ATQPPAVLMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +     K + + + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLAAEVDVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+IIDTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIIDTAGRLHVDEAMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|237712935|ref|ZP_04543416.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|260173557|ref|ZP_05759969.1| putative signal recognition protein [Bacteroides sp. D2]
 gi|262409622|ref|ZP_06086162.1| signal recognition particle protein [Bacteroides sp. 2_1_22]
 gi|294643466|ref|ZP_06721279.1| signal recognition particle protein [Bacteroides ovatus SD CC 2a]
 gi|294807908|ref|ZP_06766689.1| signal recognition particle protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|298484340|ref|ZP_07002501.1| signal recognition particle protein [Bacteroides sp. D22]
 gi|315921825|ref|ZP_07918065.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|229447054|gb|EEO52845.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352475|gb|EEZ01575.1| signal recognition particle protein [Bacteroides sp. 2_1_22]
 gi|292641185|gb|EFF59390.1| signal recognition particle protein [Bacteroides ovatus SD CC 2a]
 gi|294444906|gb|EFG13592.1| signal recognition particle protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|295087957|emb|CBK69480.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacteroides
           xylanisolvens XB1A]
 gi|298269494|gb|EFI11094.1| signal recognition particle protein [Bacteroides sp. D22]
 gi|313695700|gb|EFS32535.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 440

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 150/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +   N D   RP VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGETAEINIDA--RPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++ A++      C     +   +A  A ++A+
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYCELDSKNPVEIAQHAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  +   +       P+ +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDLVIVDTAGRLAVDEQMMNEIAAIKEAIN------PNEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLEAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|110597444|ref|ZP_01385731.1| signal recognition particle protein [Chlorobium ferrooxidans DSM
           13031]
 gi|110340988|gb|EAT59459.1| signal recognition particle protein [Chlorobium ferrooxidans DSM
           13031]
          Length = 449

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     +     +++        +++  L+ +D+   VA+K++E++  K   
Sbjct: 2   FDSLSDKLEATFKKLAGQATINEINIGLAMRDIKRALLGADVNYKVAKKLIEDIREKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V + + +++    KP N      P VI+V G+ G GKTT   KL
Sbjct: 62  EQVIKSVSPAQMIVKIVYDELTELMGGEQKPLNLSPKKLPAVIMVAGLQGSGKTTFCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++   G   ML A D +R AAIDQLK  A +        E   DA   A +  + A++
Sbjct: 122 ALRLKKNGKNPMLVAADVYRPAAIDQLKALALQVEVPVFAIEE-QDALKAALQGLEAARS 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRL  + ++MA    +   LK      P  +L V+D+  GQ A+   + 
Sbjct: 181 GARDVVIIDTAGRLQIDDLMMAEAESLKHALK------PDELLFVVDSMMGQEAVNTAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG ARGG  + I    + P+ F+ +GE ++DL+ F     +  I 
Sbjct: 235 FNDRLDFDGVVLTKLDGDARGGAALSIRQVVEKPIKFISIGEKVDDLDVFYPDRMAQRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|262375650|ref|ZP_06068882.1| signal recognition particle protein [Acinetobacter lwoffii SH145]
 gi|262309253|gb|EEY90384.1| signal recognition particle protein [Acinetobacter lwoffii SH145]
          Length = 468

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + ++  S +L +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FDTLTERLTQSLRNVTGSGQLTEDNIKDTLREVRMALLEADVALPVTREFIAKVKEEALG 61

Query: 77  KDVSVQ-----RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V  Q       +  V + + KM+   ++  +   +  P V+L+ G+ G GKTT   KL
Sbjct: 62  QEVMTQLSPGQAFVKIVHDELTKMMGEANESLDL-AAKPPVVVLLAGLQGAGKTTTAAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KV + + D +R AAI QL+  A    A F+ S        +   A +QA+
Sbjct: 121 ARFLQERQKKKVAMVSADVYRPAAIKQLQTVAGEVGAIFLESSADEKPITIVNRAIEQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 IQFADVLIVDTAGRLHIDDDMMGEIKELHAAIN------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG+GE ++ LEPF  +  +  I
Sbjct: 235 AFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGMGEKLDALEPFHPERVAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|121999083|ref|YP_001003870.1| signal recognition particle-docking protein FtsY [Halorhodospira
           halophila SL1]
 gi|121590488|gb|ABM63068.1| signal recognition particle-docking protein FtsY [Halorhodospira
           halophila SL1]
          Length = 315

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 133/313 (42%), Positives = 182/313 (58%), Gaps = 2/313 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIG 59
           MS  +   +    + +L  G   T   L EG+  +    R LDD + EELE  L+++D+G
Sbjct: 1   MSESEKTDKRPGLMGRLRNGLRRTRSGLTEGLATLFVGRRELDDELLEELEMRLLQADVG 60

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRV-LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           +   QK+++ L+ +            L  +   I K+L P+ KP   D   RP VIL VG
Sbjct: 61  MEATQKVLDGLVERLGGSGGGTGETVLEALRSEIVKVLEPVEKPLQIDTDKRPFVILTVG 120

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT IGKL+ +  + G  VM+AAGDTFR+AA+DQL+ W +R     +    GSD 
Sbjct: 121 VNGAGKTTTIGKLAARFQNEGRSVMVAAGDTFRAAAVDQLQQWGERVGCPVIAQPTGSDP 180

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ ++A + A+A+  DVLI DTAGRLH    LM  + K+ RVL R D  APH  L VLD
Sbjct: 181 ASVVFDAHQAARARGADVLIADTAGRLHTQDNLMEELRKIRRVLGRQDADAPHETLLVLD 240

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
              GQNAL Q E F A    TGL +TK+DGTARGG L+ +    ++PV ++GVGE + DL
Sbjct: 241 GGNGQNALAQAEQFGAAVNVTGLAVTKLDGTARGGVLLALAERLQVPVRYIGVGEKVEDL 300

Query: 299 EPFVAKDFSAVIT 311
             F A DF+  +T
Sbjct: 301 RTFRAADFAEALT 313


>gi|167032079|ref|YP_001667310.1| signal recognition particle protein [Pseudomonas putida GB-1]
 gi|166858567|gb|ABY96974.1| signal recognition particle protein [Pseudomonas putida GB-1]
          Length = 458

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P V+L+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLALNAA-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++  + D +R AAI QL+  A+     F  S+I     A+A  A ++A+
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH ++ +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHIDADMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|282898237|ref|ZP_06306228.1| Signal recognition particle protein [Raphidiopsis brookii D9]
 gi|281196768|gb|EFA71673.1| Signal recognition particle protein [Raphidiopsis brookii D9]
          Length = 480

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++          E+   L+ +D+ + V +  + ++  K   
Sbjct: 2   FDALSDRLEAAWKKLRGQDKISQTNIQDALREVRRALLEADVNLQVVKDFIVDVENKAQG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + +++   + P       +  VIL+ G+ G GKTT   KL
Sbjct: 62  AEVISGVRPDQQFIKIVYDELVQVMGEENVPL-AQAQDKTTVILMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       +L A D +R AAIDQL     +           +D   +A +  ++A+ 
Sbjct: 121 ALHLRKTNRSCLLVATDVYRPAAIDQLVTLGKQVDVPVFEMGSDADPVEIARQGVERARN 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + ++ +I+DTAGRL  +  +MA + ++   ++      P   L V+DA TGQ A      
Sbjct: 181 EGINTVIVDTAGRLQIDQDMMAELSRIKSTIE------PDETLLVVDAMTGQEAANLTRT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TKMDG +RGG  + +      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FHEQIGITGAILTKMDGDSRGGAALSVRQISGAPIKFIGVGEKVEALQPFYPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|167761983|ref|ZP_02434110.1| hypothetical protein BACSTE_00328 [Bacteroides stercoris ATCC
           43183]
 gi|167700215|gb|EDS16794.1| hypothetical protein BACSTE_00328 [Bacteroides stercoris ATCC
           43183]
          Length = 440

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 151/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKSFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +   N D   +P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGETAEINID--SKPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++ A++            D  ++A  A ++A+
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYSEPDSKDPVSIAQNAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  +   +       P+ +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDLVIVDTAGRLAVDEEMMNEIAAIKSAIN------PNEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRTVVNKPIKFVGTGEKLDAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|116073373|ref|ZP_01470635.1| signal recognition particle protein [Synechococcus sp. RS9916]
 gi|116068678|gb|EAU74430.1| signal recognition particle protein [Synechococcus sp. RS9916]
          Length = 499

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++     DG  +E+   L+ +D+ + V +  V E+  K   
Sbjct: 2   FDELSARFEDAVKGLKGQDKISETNVDGALKEVRRALLEADVSLPVVKDFVAEVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V E + +++   + P        P V+L+ G+ G GKTT   KL
Sbjct: 62  AEVVRGVSPDQKFIQVVHEQLVEVMGGGNAPL-AKADQAPTVVLMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + D G + ++   D +R AAI+QL+   ++   +       +    +A     +A+ 
Sbjct: 121 GLHLKDQGRRALMVGADVYRPAAIEQLRTLGEQIDVEVFSLGAEAKPEDIAAAGLAKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D L++DTAGRL  ++ +M  + ++   ++      P  VL V+D+  GQ A      
Sbjct: 181 EGFDTLLVDTAGRLQIDTSMMEEMVRIRTAVQ------PDEVLLVVDSMIGQEAAELTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHEQVGITGAVLTKLDGDSRGGAALSIRKVSGQPIKFMGTGEKVEALQPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|319901661|ref|YP_004161389.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacteroides
           helcogenes P 36-108]
 gi|319416692|gb|ADV43803.1| signal recognition particle subunit FFH/SRP54 (srp54) [Bacteroides
           helcogenes P 36-108]
          Length = 440

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 150/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +   N D   +P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGETAEINID--SKPSVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++ A++            D   +A  A ++A+
Sbjct: 120 ARMLKAKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYSEPDSKDPVTIAQNAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  D++I+DTAGRL  +  +M  I  + + +       P+ +L V+D+ TGQ+A+   +
Sbjct: 180 EKGYDLVIVDTAGRLAVDEEMMNEIAAIKKAID------PNEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+I+TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFNGVILTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|172040476|ref|YP_001800190.1| signal recognition particle protein [Corynebacterium urealyticum
           DSM 7109]
 gi|171851780|emb|CAQ04756.1| signal recognition particle protein [Corynebacterium urealyticum
           DSM 7109]
          Length = 531

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 143/318 (44%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FESLSDRLSGALKGLRGKGRLTEQDINTTAREIRLALLEADVSLPVVRAFIKRIKERANG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             VS      Q+V+  V E + ++L   ++       H P VI++ G+ G GKTT+ GKL
Sbjct: 62  VIVSEALNPAQQVIKIVDEELKEILGGETRRLTL-AKHPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           ++ +S  G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 ARYLSKQGHTPMLVACDLQRPGAVQQLQIVGERAGVTTFAPDPGTSLESHDHEMGTSTGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A +  ++A   + D++IIDTAGRL  +  LM     +       D   P  VL V+
Sbjct: 181 PVEVAEKGIEEAYRTQHDIVIIDTAGRLGIDETLMTQARNI------RDAVEPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQ+A+   E F      TG+++TK+DG ARGG  + I      P+ F   GE + D
Sbjct: 235 DAMTGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPILFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     ++ I G  D
Sbjct: 295 FDVFHPDRMASRILGMGD 312


>gi|238916984|ref|YP_002930501.1| signal recognition particle, subunit SRP54 [Eubacterium eligens
           ATCC 27750]
 gi|238872344|gb|ACR72054.1| signal recognition particle, subunit SRP54 [Eubacterium eligens
           ATCC 27750]
          Length = 448

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 142/305 (46%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++    RL +       +E++  L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFDSLSEKLQNIFKNLRGKGRLSEADVKAALKEVKLALLEADVNFKVVKQFIKSVEERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +            VI++ G+ G GKTT   K
Sbjct: 62  GQDVMSSLTPGQMVIKIVNEEMVSLMGSETTEIALKPGSEITVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G K +L A D +R AAI+QL I  ++   +            +A  A   A+
Sbjct: 122 LAGKFKAKGRKPLLVACDVYRPAAIEQLTINGNKQGVEVFSMGTNQKPVDIAKAAIAHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               + +I+DTAGRLH +  +M  +  +   +           + V+D+ TGQ+A+    
Sbjct: 182 NNDFNTVILDTAGRLHVDEDMMNELIDIKANVS------VDQTILVVDSMTGQDAVNVAS 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 SFNEKVGIDGVILTKLDGDTRGGAALSIKAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|42519388|ref|NP_965318.1| signal recognition particle protein [Lactobacillus johnsonii NCC
           533]
 gi|41583676|gb|AAS09284.1| signal recognition particle protein [Lactobacillus johnsonii NCC
           533]
          Length = 476

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 18/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L++ + ++    ++ +        E+   L+ +D+   V +  ++++  +  
Sbjct: 2   AFENLSERLQKALKNLTGKGKISEADINDASREIRLALLEADVNFKVVKDFIKKIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V + + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQDSLNPGQQIIKIVDDELTKMMGEEAVSLNKS-PHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAI+QLK    +       SE   D A +     ++A
Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIEQLKQIGQQLDVPVY-SEDNQDVAEIVKHGLEEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM     + RV +   P    + L V+DA TGQ A +  
Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDE---LKRVTEVAHP---DNTLLVVDAMTGQAATQVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I     +P+ F G GE + DL  F     ++ 
Sbjct: 234 EGFNNDLDLTGIVLTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 294 ILGMGDM 300


>gi|24372934|ref|NP_716976.1| signal recognition particle protein [Shewanella oneidensis MR-1]
 gi|24347070|gb|AAN54421.1|AE015579_10 signal recognition particle protein Ffh [Shewanella oneidensis
           MR-1]
          Length = 457

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  +  V   + K +   ++  +   +  P V+++ G+ G GKTT + KL
Sbjct: 62  QEVAKSLSPGQAFIKIVQSELEKSMGEANQALDL-ATQPPAVVMMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +     K + + + D +R AAI QL+  A     +F  S++      +A  A   A+
Sbjct: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH +  +M  I  +   LK      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAALK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|220931571|ref|YP_002508479.1| signal recognition particle-docking protein FtsY [Halothermothrix
           orenii H 168]
 gi|219992881|gb|ACL69484.1| signal recognition particle-docking protein FtsY [Halothermothrix
           orenii H 168]
          Length = 322

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 184/312 (58%), Gaps = 4/312 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           +  +   E      +L  G   T     + +T + +SR ++DD + E+LE++LI+SD+GV
Sbjct: 11  AKTENNDEKEGLFSRLKGGLDKTRSGFIQKVTGLFTSRGKIDDELFEDLEEILIQSDVGV 70

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               K+VEEL      K ++    L D+ +E + ++L         +     ++++VVGV
Sbjct: 71  KTTMKLVEELEEITEEKKITEPEQLIDIFNEELRQILESDDNGLELE--DGLNILMVVGV 128

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT I K++++  + G KVMLAAGDTFR+AAIDQLK W DR     +    G+DAA
Sbjct: 129 NGAGKTTTIAKIAQRFKNEGKKVMLAAGDTFRAAAIDQLKTWGDRIGVKTIAQAEGADAA 188

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A++A + A+A+ VD+LI+DTAGRLH    LM  + K+ RV++R    A   VL VLDA
Sbjct: 189 AVAFDAIQSARARGVDLLIVDTAGRLHTQKNLMEELKKVRRVIEREGKGANIEVLLVLDA 248

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q  +F+      G+ +TK+DGTA+GG +I +     IP+  +GVGE   DL+
Sbjct: 249 TTGQNAINQARLFNEAVQVDGIALTKLDGTAKGGIVIAVKNELGIPIKLIGVGERAEDLQ 308

Query: 300 PFVAKDFSAVIT 311
            F    F   + 
Sbjct: 309 DFKPDRFVEALF 320


>gi|300728157|ref|ZP_07061528.1| signal recognition particle protein [Prevotella bryantii B14]
 gi|299774583|gb|EFI71204.1| signal recognition particle protein [Prevotella bryantii B14]
          Length = 449

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+     +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETMKDIRRALLDADVNFKVAKDFTNRVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   S P   +   RP +IL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVSPGQMLVKLVHDELAELMGGESVPMKLE--GRPAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AAIDQLK+  +       C     D  ++A  A ++A+
Sbjct: 120 ANLLKAKQHKNPLLVACDVYRPAAIDQLKVVGESVGVPVYCEPENKDVLSIADHALQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+IIDTAGRL  +  +M  I  +   +       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKSHDVVIIDTAGRLAIDEQMMTEISNLKNHVH------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  L+ F     +  I
Sbjct: 234 EFNERLDFDGVVLTKLDGDTRGGAALSIRTVVDKPIKFIGTGEKMEALDVFHPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|77919819|ref|YP_357634.1| signal recognition particle protein [Pelobacter carbinolicus DSM
           2380]
 gi|77545902|gb|ABA89464.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pelobacter
           carbinolicus DSM 2380]
          Length = 451

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + KL      +    RL +   +    E+  +L+ +D+   V +  V  +  +   
Sbjct: 4   FDNLTDKLDSVFKKLRGQGRLTEDNIKQSMREVRLVLLEADVNFRVVKNFVATVRERAVG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + + +++           +  P  I++ G+ G GKTT  GKL
Sbjct: 64  QEVLKSLNPAQQVIKVVRDELGRLMGEGEDNSLDLAARPPVPIMLCGLQGAGKTTSCGKL 123

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++       +L   D +R AAI+QLK    + +     S    D   L  +A + A+ 
Sbjct: 124 ALQLRRQKRNPLLVPADVYRPAAIEQLKTLGKQLNIPVFDSNPDVDPVKLCTDAREFAEL 183

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D LI+DTAGRLH +  LMA + ++ + L+      P  +L V DA TGQ+A+   E 
Sbjct: 184 NGYDTLILDTAGRLHVDQELMAELQRIKQALQ------PREILFVADAMTGQDAVNVAES 237

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG ARGG  + I      P+ F+G+GE ++ LE F     +  I 
Sbjct: 238 FDQQLDVTGVILTKLDGDARGGAALSIRAVTGKPIKFVGLGEKLDALEVFHGDRMAQRIL 297

Query: 312 GCLD 315
           G  D
Sbjct: 298 GMGD 301


>gi|33595209|ref|NP_882852.1| signal recognition particle protein [Bordetella parapertussis
           12822]
 gi|33599497|ref|NP_887057.1| signal recognition particle protein [Bordetella bronchiseptica
           RB50]
 gi|33565286|emb|CAE36085.1| signal recognition particle protein [Bordetella parapertussis]
 gi|33567093|emb|CAE31006.1| signal recognition particle protein [Bordetella bronchiseptica
           RB50]
          Length = 469

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/317 (27%), Positives = 147/317 (46%), Gaps = 28/317 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V +  V  +  K   
Sbjct: 2   LDNLTQRLSRVVKTLRGEARLTEANTQEMLREVRMALLEADVALPVVRDFVARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++         + S     P VIL+ G+ G GKTT  
Sbjct: 62  EEVAGSLSPGQALVGVVHKELTSLMGGDLGEHAGELSLATQPPAVILMAGLQGAGKTTTT 121

Query: 129 GKLSKKM----------SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GKL++ +               KV++ + D +R AAI+QLK  A +   DF+ S++    
Sbjct: 122 GKLARWLSEGQHVQGGRKTGKKKVLVVSADVYRPAAIEQLKTVAAQVGVDFLPSDVSQKP 181

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A  A   A+    DVLI+DTAGRL  +  +M  I  +  ++K      P   L V+D
Sbjct: 182 EDIARNAIDHARRHHYDVLIVDTAGRLGIDEAMMREIRALHDLVK------PIETLFVVD 235

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+     F      TG+++TK+DG ARGG  + +      P+ F+GV E ++ L
Sbjct: 236 AMQGQDAVNTARAFGDALPLTGVVLTKLDGDARGGAALSVRHVTGKPLKFVGVSEKLDGL 295

Query: 299 EPFVAKDFSAVITGCLD 315
           EPF  +  +  + G  D
Sbjct: 296 EPFHPERMAQRVLGMGD 312


>gi|332705584|ref|ZP_08425660.1| signal recognition particle subunit FFH/SRP54 [Lyngbya majuscula
           3L]
 gi|332355376|gb|EGJ34840.1| signal recognition particle subunit FFH/SRP54 [Lyngbya majuscula
           3L]
          Length = 479

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 145/308 (47%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L +       KL+    D ISS  + D   +E+   L+ +D+ + V +  V E+  
Sbjct: 1   MFDALAERLEDAWKKLRGQ--DKISSSNIQDA-LKEVRRALLSADVNLQVVKDFVAEVEA 57

Query: 73  KRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K    +V+      Q+ +  V + + +++   + P        P V+L+ G+ G GKTT 
Sbjct: 58  KAQGSEVTSGVRPDQQFIKIVYDELVQVMGETNVPL-AQADTPPTVVLMAGLQGTGKTTA 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+  +       +L A D +R AAIDQL     +           +D   +A +  +
Sbjct: 117 SAKLALHLRKQERSCLLVATDVYRPAAIDQLVTLGQQIDVPVFELGTEADPVEIARQGVE 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+A  +D +IIDTAGRL  +  +M  + ++   ++      PH  L V+DA TGQ A  
Sbjct: 177 RAKAMAIDTVIIDTAGRLQIDQEMMGELSRIKETVQ------PHDTLLVVDAMTGQEAAT 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               FH   G TG I++K+DG +RGG  + +      P+ F+GVGE +  L+PF     +
Sbjct: 231 LTRTFHEQIGITGAILSKLDGDSRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRMA 290

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 291 SRILGMGD 298


>gi|284045135|ref|YP_003395475.1| signal recognition particle protein [Conexibacter woesei DSM 14684]
 gi|283949356|gb|ADB52100.1| signal recognition particle protein [Conexibacter woesei DSM 14684]
          Length = 444

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL+  ++D+ S   L +        E+   L+ +D+   V ++    +  +   
Sbjct: 2   FDSLAEKLQATLSDVRSRGTLTEDDVNAAMREIRLALLEADVNFKVVKRFTNAVKERALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+V+  V++ + +++   S    +  S  P VIL+ G+ G GKTT   KL
Sbjct: 62  SDVIGQLNPGQQVVKIVNDELAELMGGESAELRFS-SSPPTVILMAGLQGSGKTTATAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +     + +AA D +R AA++QL     R  AD       +D   +A  A ++A+
Sbjct: 121 ARLLREQNRSSVAVAACDVYRPAAVEQLITVGARAGADVYERGTDADPVEIAKWARERAE 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRLH +  LM  + ++ RV        P +VL V+DA TGQ+A+   E
Sbjct: 181 REGKDVLIVDTAGRLHVDENLMKELAEIKRVTN------PTNVLLVVDAMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F  V    G++M+K+DG ARGG  + +      P+ F   GE ++  E F     +  I
Sbjct: 235 QFAEVVQFDGVVMSKLDGDARGGAALSVKSVTGKPILFASTGEKLDQFERFHPDRMAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|222528961|ref|YP_002572843.1| signal recognition particle protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455808|gb|ACM60070.1| signal recognition particle protein [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 443

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S S KL++    +    +L +       +E++  L+ +D+   V +  +  +  K   
Sbjct: 2   FSSLSEKLQDVFKRLRGKGKLTEKDIKDAMKEVKLALLEADVNYKVVKDFINTVTQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + +  +L        +  S      ++VG+ G GKTT  GKL
Sbjct: 62  EEVLESLTPAQQVIKIVYDEMVNLLGGSDTKLTFSPSGF-STYMMVGLQGSGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL++ A +            DA  +A E  + A+ 
Sbjct: 121 AGLLKRQGKNPLLVACDIYRPAAIKQLEVVAQKVGVKCFADYNSKDAVKIAKEGIEFAKV 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            + DV I+DTAGRLH N  LM  +  +   +K      P  +L VLDA TGQ+A+     
Sbjct: 181 SRCDVAIVDTAGRLHINQELMDELVAIKNAIK------PTEILLVLDAMTGQDAVNVAAA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+IMTK+DG  RGG  + +      P+ F GVGE + DLE F     ++ I 
Sbjct: 235 FNEQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVGEKMEDLEAFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|78189179|ref|YP_379517.1| cell division transporter substrate-binding protein FtsY
           [Chlorobium chlorochromatii CaD3]
 gi|78171378|gb|ABB28474.1| signal recognition particle-docking protein FtsY [Chlorobium
           chlorochromatii CaD3]
          Length = 317

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 123/305 (40%), Positives = 185/305 (60%), Gaps = 6/305 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + +L +G   T   L+E ++ I   +  +DD   EELE +L+ +D+GV     IV+ +  
Sbjct: 9   LSRLKEGLEKTRDTLREKLSVITKGKTEIDDEFLEELETILVGADVGVETTLAIVDAITE 68

Query: 73  KRYAKDVSVQRVL-YDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTV 127
           +   +    +  L   + + I +ML   S      F+     +P+VILVVGVNG GKTT 
Sbjct: 69  RAKKETYHSETELNRMLIDEIQQMLQESSDEHPVDFDAPLPAKPYVILVVGVNGAGKTTS 128

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL+     AG KV++AA DTFR+AA +QL+IWADR     +    G+D A++ ++A  
Sbjct: 129 IAKLAHNYDQAGKKVIIAAADTFRAAAYEQLQIWADRAGVPMIGQGQGADPASVVFDAVS 188

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A ++  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQNA++
Sbjct: 189 AAVSRNADVVLVDTAGRLHNKSHLMEELAKIMRVAKKRIPEAPHEVLLVLDGTTGQNAVQ 248

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F      TGL++TK+DGT++GG ++ I    K+PV ++GVGE I+DL+ F  ++F 
Sbjct: 249 QAQEFTKFVQVTGLVVTKLDGTSKGGIVLSISRDLKLPVKYIGVGEKIDDLQLFDRRNFV 308

Query: 308 AVITG 312
             + G
Sbjct: 309 GALLG 313


>gi|300814481|ref|ZP_07094742.1| putative signal recognition particle protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|300511399|gb|EFK38638.1| putative signal recognition particle protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 321

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+  +  +    +L     D    E++  L+ +D+   V +  ++    +   
Sbjct: 3   FESLSEKLQNTLNKLTGKGKLTEKDIDAAMREVKLALLEADVNFKVVKDFIKNTKERALG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+V+  V++ +  ++    +    D+S +P VIL+ G+ G GKTT  GKL
Sbjct: 63  SQVLESLTPGQQVIKIVNDELKNLMGK--EQVKIDYSKKPTVILMCGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + KM   G + +L A D +R AAI QL++                D   ++  + + A+ 
Sbjct: 121 ANKMKQEGKRPLLVACDVYRPAAIKQLQVVGKSVDVPVFTMGDKIDPVDISKASLEHAKK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLIIDTAGRL  +  LM  +  +   L+      P  VL VLD+ TGQ A+   + 
Sbjct: 181 NGNDVLIIDTAGRLQIDEKLMQELKNIYDALE------PSEVLLVLDSMTGQEAVNVADT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG ARGG  + I     +P+ F+  GE ++++E F     ++ I 
Sbjct: 235 FDDTLKLTGVILTKLDGDARGGAALSIRAVTDVPIKFIASGEKMDNIEVFHPDRMASRIL 294

Query: 312 GCLDY 316
           G  D 
Sbjct: 295 GMGDM 299


>gi|121997247|ref|YP_001002034.1| signal recognition particle protein [Halorhodospira halophila SL1]
 gi|121588652|gb|ABM61232.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Halorhodospira halophila SL1]
          Length = 468

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 156/309 (50%), Gaps = 16/309 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT  F S + ++       I+   + + VRE +   L+ +D+ + V +   EE+  
Sbjct: 1   MFENLTGRFDSVTQRMSG--RGRITDENIQETVRE-VRKALLEADVALPVVRSFTEEVKK 57

Query: 73  KRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +    +V+      Q  +  V + + +++   ++P N +    P V+LV G+ G GKTT 
Sbjct: 58  RAEGAEVAKSLTPGQAFIKIVQDELVRVMGAEAEPLNLNV-QPPAVVLVAGLQGSGKTTS 116

Query: 128 IGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           IGKL++ +      KV++ + D +R AAIDQL+  A +   DF  S+ G     +A +A 
Sbjct: 117 IGKLARYLREREKKKVLVVSCDVYRPAAIDQLETLAGQVEVDFFPSKSGDKPERIAKDAV 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+    DVL++DTAGRL  +  +M  + ++ + +           L V+DA TGQ+A 
Sbjct: 177 DHAKRHYYDVLLVDTAGRLTIDEAMMDEVKRLHKTVTPA------ETLFVVDAMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +  + F      TG+++TK DG ARGG  + +      P+ FLG+GE  + LEPF  +  
Sbjct: 231 KTAQAFGEALPLTGVVLTKTDGDARGGAALSVRHVTGAPIKFLGIGEKTDALEPFHPERV 290

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 291 ASRILGKGD 299


>gi|325290414|ref|YP_004266595.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965815|gb|ADY56594.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 461

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 145/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+     +    +L +  V E + +    L+ +D+   V + ++ ++  +   
Sbjct: 4   FEGLSEKLQATFKRLKGKGKLTEADVNEAMREVRVALLEADVNFKVVKDLIAKIKERAVG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V+E +  M+           S  P V+++VG+ G GKTT   KL
Sbjct: 64  QEVLESLTPGQHVIKIVNEEMVAMMGGSESKLAIS-SKPPTVVMLVGLQGAGKTTHGAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL++  ++            +   +A E+   A  
Sbjct: 123 ANMLKKQGKHPLLVACDIYRPAAIKQLQVLGEQIKVPVFSLG-QENPVKIAGESLDYAGK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +IIDTAGRLH N  LM  +  +  V++      PH +L V+DA TGQ+A+   E 
Sbjct: 182 NGHDTVIIDTAGRLHINEELMGELEDIKAVVQ------PHEILLVVDAMTGQDAVNVAET 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F++    +G+I++K+DG  RGG  I +      P+ + GVGE ++ LE F      + I 
Sbjct: 236 FNSKLALSGVILSKLDGDTRGGAAISVRSVTGCPIKYAGVGEKMDALEVFYPDRMVSRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|330721223|gb|EGG99327.1| Signal recognition particle2C subunit Ffh SRP54 [gamma
           proteobacterium IMCC2047]
          Length = 455

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  +    +L D        E+   L+ +D+ + V +  +E++  +   
Sbjct: 2   FDNLTNRLTGAMRKVSGKAKLSDDNIKSTLREVRKALLEADVALPVVKAFIEQVRKRAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V   +  ++   S+  N   +  P VILV G+ G GKTT +GKL
Sbjct: 62  QEVKRSLSPGQALIKVVQNELENVMGEKSEDLNL-ATQPPAVILVAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV + + D +R AAI QL+  A    ADF  S        +A  A + A+
Sbjct: 121 ARFLKERHNKKVTVVSADVYRPAAIKQLETLAAEVEADFFPSSADQKPIDIANAAIEHAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I  +   ++      P   L V+DA TGQ+A    +
Sbjct: 181 LKYSDVLILDTAGRLHVDEGMMDEIKALHAAVE------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK DG +RGG  + +      P+ F+G+GE  + LEPF     ++ I
Sbjct: 235 AFNDALPLTGVVLTKADGDSRGGAALSVRHITGKPIKFMGMGEKTDALEPFYPDRVASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|291544315|emb|CBL17424.1| signal recognition particle-docking protein FtsY [Ruminococcus sp.
           18P13]
          Length = 319

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 3/311 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    K+ +G   T   +  G+  +++S  ++D+ + E+LE+ +I SD+GV  + +I E+
Sbjct: 1   MGLFSKIKEGLRKTKESMISGMQRVVNSFTKIDEDLFEQLEETMIMSDMGVETSVEICEK 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +   + V+    + ++ + I   +  + +    D S  P +ILV+GVNG GKTT IG
Sbjct: 61  LRKRVKERGVTDPGKIMELIQEIISEM--MGEDVALDLSTTPSIILVIGVNGAGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL  +    G KV++AA DTFR+AAIDQL++W  R   D V    GSD AA+ ++A   A
Sbjct: 119 KLCHQYKQQGKKVLVAAADTFRAAAIDQLEVWTQRAGVDLVKHAEGSDPAAVVFDAVTAA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI DTAGRLHN   LM  + K+ R++ +         L VLDATTGQNA+ Q 
Sbjct: 179 KARKTDVLICDTAGRLHNKKNLMEELRKINRIISQQAEGCAVETLLVLDATTGQNAVNQA 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F+ VA  TG+++TK+DGTA+GG +I I     IPV  +GVGE I+DL+PF ++ F   
Sbjct: 239 RLFNEVADITGIVLTKLDGTAKGGIVISIKNELGIPVKLIGVGEQIDDLQPFDSRSFVTA 298

Query: 310 ITGCLDYGEEK 320
           +    D GEE+
Sbjct: 299 LFERTDKGEEQ 309


>gi|150021672|ref|YP_001307026.1| signal recognition particle protein [Thermosipho melanesiensis
           BI429]
 gi|149794193|gb|ABR31641.1| signal recognition particle protein [Thermosipho melanesiensis
           BI429]
          Length = 435

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 149/304 (49%), Gaps = 19/304 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F     KL +    +    ++ +  ++E ++ +   L+ +D+   V ++ +E++  K   
Sbjct: 2   FEGLQEKLSKAFKTLSGKGKITEKNIKEAIKIVKLSLLEADVNYKVVKEFIEDVKKKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q  +  + + + K++    +       H P  I++VG+ G GKTT   KL
Sbjct: 62  EKVLRSLTPDQMFIKILRDELIKLMG---EKQPLKMIHSPSYIMMVGLQGSGKTTSAAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G K  L A DT+R AAIDQL     +      C +       +  EA K+ + 
Sbjct: 119 ANLLKKKGRKPYLVAADTYRPAAIDQLITLGKKIDVPVYCGD-RKHPIKIVEEALKEVKD 177

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I DTAGRLH ++ +M  + ++  +L       P  +L V+DA TGQ+A+   + 
Sbjct: 178 SGYDVVIFDTAGRLHIDNEMMNELVEIKEILS------PDEILMVVDAMTGQDAVNSAKT 231

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG ++TKMDG ARGG ++ I      PV F+GVGE I DLE F  +  ++ I 
Sbjct: 232 FNEKLDVTGFVVTKMDGDARGGVILSIRYVTNKPVKFIGVGEKIEDLEEFYPERIASRIL 291

Query: 312 GCLD 315
           G  D
Sbjct: 292 GLGD 295


>gi|255994441|ref|ZP_05427576.1| signal recognition particle protein [Eubacterium saphenum ATCC
           49989]
 gi|255993154|gb|EEU03243.1| signal recognition particle protein [Eubacterium saphenum ATCC
           49989]
          Length = 442

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S K++   + +     L +   +    E++  L+ +D+   + ++ V ++  K  
Sbjct: 2   AFESLSEKMQRAFSKLKGKGTLSEKDIDVAMREIKLALLEADVSYKIVKEFVNDVKEKSL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+  + +++  +S    +       + ++VG+ G GKTT   K
Sbjct: 62  GSEVMKSLTPDQQVIKFVNTELRELMGDVSSKLTFSPKGF-TIYMMVGLQGTGKTTTCAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K + + G K MLAA D +R AAIDQL++       +       S    +A  A ++A+
Sbjct: 121 LAKYLKEQGKKPMLAACDVYRPAAIDQLEVVGKDVGVEVYADREESSPVKIAKAAIEKAE 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++VLI+DTAGRL  +  LM  +  +   +       PH +L V+DA TGQ+A+    
Sbjct: 181 RLGMNVLILDTAGRLQIDEELMDELADIKSEVH------PHEILLVVDALTGQDAVNTAS 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G  G+IMTK+DG ARGG  + +       + F+G+GE  ++ E F     +  I
Sbjct: 235 GFHDKLGVDGVIMTKLDGDARGGAALSVKKVTGTAIKFVGLGEKFDEFEVFHPDRMADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|254414856|ref|ZP_05028620.1| signal recognition particle protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196178345|gb|EDX73345.1| signal recognition particle protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 486

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++    +    ++         +E+   L+ +D+ + V +K V ++ T    
Sbjct: 2   FDALAERLEDAWKKLRGQDKISQANIQDALKEVRRALLSADVNLQVVKKFVADVETTAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+ +  V + + +++   + P        P ++L+ G+ G GKTT   KL
Sbjct: 62  ADVIAGVRPDQQFIKIVYDELVQVMGESNVPL-AKADTSPTIVLMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       ++ A D +R AAIDQL    ++ +         ++   +A +    A+ 
Sbjct: 121 ALHLGKENRSCLMVATDVYRPAAIDQLVTLGEQINIPVFEMGTDTNPVEIACQGVAHAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VD +IIDTAGRL  ++ +MA + ++   +K      P  VL V+DA TGQ A      
Sbjct: 181 TGVDTVIIDTAGRLQIDAEMMAELAQIKDNVK------PDEVLLVVDAMTGQEAATLTHT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I+TK+DG  RGG  + +      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FNQQIGITGAILTKLDGDTRGGAALSVRQVSGQPIKFVGVGEKVEALQPFYPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|306827321|ref|ZP_07460608.1| signal recognition particle protein [Streptococcus pyogenes ATCC
           10782]
 gi|304430468|gb|EFM33490.1| signal recognition particle protein [Streptococcus pyogenes ATCC
           10782]
          Length = 520

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q++L  V+E +  +L   +   +      P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENRNDYVLIDTAGRLQIDEKLMEELRDVKAL------AQPNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     S+ 
Sbjct: 235 YEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|289207611|ref|YP_003459677.1| signal recognition particle protein [Thioalkalivibrio sp. K90mix]
 gi|288943242|gb|ADC70941.1| signal recognition particle protein [Thioalkalivibrio sp. K90mix]
          Length = 462

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E +  +    RL +        E+   L+ +D+ + V ++ V+++  K   
Sbjct: 2   FDGLSSRLQETMKRLKGQARLTEDNIQDALREVRMALLEADVALPVVREFVKDVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +   +   +   N      P V+LV G+ G GKTT IGKL
Sbjct: 62  QEVIGSLTPGQALIKVVHDELVATMGGENAALNLAV-QPPAVVLVAGLQGAGKTTSIGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KV + + D +R AAI QL+  A +    F  S+      A+A EA  +A+
Sbjct: 121 ARLLREREKKKVAVVSCDVYRPAAIQQLETLAGQVEVTFYPSDTSQKPEAIASEAVARAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +VL++DTAGRLH +  +MA +  + + +       P   L V+D+ TGQ+A     
Sbjct: 181 RDGTEVLLVDTAGRLHVDEDMMAEVKALHQAID------PIETLFVVDSMTGQDAANTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +     +P+ F+G+GE  + LEPF  +  ++ I
Sbjct: 235 AFGEALPLTGVVLTKADGDARGGAALSVRQITGVPIKFIGMGERPDALEPFHPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGKGD 299


>gi|163847609|ref|YP_001635653.1| signal recognition particle protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525465|ref|YP_002569936.1| signal recognition particle protein [Chloroflexus sp. Y-400-fl]
 gi|163668898|gb|ABY35264.1| signal recognition particle protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449344|gb|ACM53610.1| signal recognition particle protein [Chloroflexus sp. Y-400-fl]
          Length = 450

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 153/306 (50%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREEL---EDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+     + S  RL +D VRE +      L+ +D+   V ++ V ++  +   
Sbjct: 2   FESLSDRLQAVFQKLGSKGRLTEDDVREAMKQVRLALLEADVNFRVVKEFVAKVTEQAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q+V+  V + +  +L   + P   +    P VI++VG+ G GKTT+  KL
Sbjct: 62  EEVTKSLTPHQQVIKIVHQELINLLGTENVPLQ-EARPGPTVIMLVGLQGTGKTTLAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G +V+L A D +R AAI QL+    + +         +    +A  A + A+ 
Sbjct: 121 ALHLRKKGKRVLLVAADVYRPAAITQLQALGRQLNIPVYSEGTQASPPDIAEHALEHARK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +V+IIDTAGRL  +  LM  + ++       +   P   L V+DA TGQ A+R  E 
Sbjct: 181 ELFNVVIIDTAGRLQIDEPLMQELEQI------ENRVHPIERLLVVDAMTGQEAVRVAET 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND--LEPFVAKDFSAV 309
           F+     TG++MTKMDG ARGG  + +     +P+ FL  GE ++   LE F     ++ 
Sbjct: 235 FNQRVKLTGVVMTKMDGDARGGAALSVRAVTGVPIKFLSTGEKVDGNTLEVFHPDRLASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|269836378|ref|YP_003318606.1| signal recognition particle-docking protein FtsY [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785641|gb|ACZ37784.1| signal recognition particle-docking protein FtsY [Sphaerobacter
           thermophilus DSM 20745]
          Length = 321

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 166/311 (53%), Gaps = 13/311 (4%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           K+  G   T   + + I ++     + + + E+LE LLI++D+GV    ++++ L  +  
Sbjct: 16  KIEAGLKKTRRGIFKDIANLFERSEITEDLFEDLEALLIQADLGVETTLELLDNLRDRID 75

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIG 129
            + +   +   D  E +   ++ L +    +   +      P VILVVGVNG GKTT I 
Sbjct: 76  RERI---KQPADAREALRTEMIALLENATRNRKIKIYQRGVPFVILVVGVNGTGKTTTIA 132

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K   D G  VML AGDTFR+AAIDQLK+W +R     +  + G+D  A+ ++  + A
Sbjct: 133 KLAKYHQDQGRNVMLVAGDTFRAAAIDQLKVWGERLKVPVIAHDPGADPGAVVFDGMQAA 192

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  D+L++DTAGRLH    LM  + K+ +V++R    AP  VL V+DATTGQN L Q 
Sbjct: 193 YNRNADILLVDTAGRLHTKYNLMEELKKIRKVMQRHVAEAPQEVLLVIDATTGQNGLVQA 252

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      T + + K+DGTARGG    I      P+ ++G GE +  L  F    +   
Sbjct: 253 KKFAEAVEITDIAIAKLDGTARGGIAFAIARELGTPISYVGTGEQVTALAEFNPVTYVDA 312

Query: 310 ITGCLDYGEEK 320
           +     +GEE+
Sbjct: 313 LF----FGEEE 319


>gi|222151070|ref|YP_002560224.1| signal recognition particle protein [Macrococcus caseolyticus
           JCSC5402]
 gi|222120193|dbj|BAH17528.1| signal recognition particle protein [Macrococcus caseolyticus
           JCSC5402]
          Length = 450

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  I    ++ +     +  E+   L+ +D+   V ++ V+ +  +  
Sbjct: 2   AFEGLSDRLQATMQKIKGKGKVTEADIKVMMREVRLALLEADVNFKVVKEFVKTVSDRAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  ++   +   N      P V+++VG+ G GKTT  GK
Sbjct: 62  GSEVMQSLTPGQQIIKIVQEELTTLMGSENTQINMS-KKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K +L A D +R AAI QL+    +                +   A + A
Sbjct: 121 LALLMRKKYNKKPLLVACDIYRPAAIQQLQTVGKQIDIPVFTLGDQVSPKEITERALQHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  +        P  ++ V+D+ TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELVEVKEI------SQPDEIMLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LEPF  +  ++ 
Sbjct: 235 ESFDNQLDITGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|68536272|ref|YP_250977.1| signal recognition particle protein [Corynebacterium jeikeium K411]
 gi|68263871|emb|CAI37359.1| signal recognition particle protein [Corynebacterium jeikeium K411]
          Length = 532

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/318 (27%), Positives = 142/318 (44%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+  +  +    +L +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FESLSDRLQSAMKGLRGKGKLSEADINATAREIRLALLEADVSLPVVRAFIKRIKERAAG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++  N    H P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPAQQVIKIVNEELKEILGGETRRLNL-AKHPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           +  ++  G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 ALHLAKQGHTPMLVACDLQRPGAVQQLQIVGERAGVKTFAPDPGTSLDSHDHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A   + D++IIDTAGRL  +  LM     +       D   P  VL V+
Sbjct: 181 PVDVAQRGIEEAYRSQHDIVIIDTAGRLGIDEELMRQARNI------RDAVEPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F      TG+++TK+DG ARGG  + I      P+ F   GE   D
Sbjct: 235 DAMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPILFASTGEKQED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     +  I G  D
Sbjct: 295 FDIFHPDRMANRILGMGD 312


>gi|114328162|ref|YP_745319.1| cell division protein ftsY [Granulibacter bethesdensis CGDNIH1]
 gi|114316336|gb|ABI62396.1| cell division protein ftsY [Granulibacter bethesdensis CGDNIH1]
          Length = 306

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 139/303 (45%), Positives = 208/303 (68%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +L +  KL +G A ++ KL   +T +IS RRLDD   EELE+ LI +D+G +VA +++E 
Sbjct: 2   ALGFFSKLKEGLARSTQKLTTNLTSVISHRRLDDAALEELEEALIAADLGTSVAARVIEA 61

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               R+ ++V+ + +   ++E I ++L P++ P   D + +PHVIL+VGVNG GKTT IG
Sbjct: 62  FRRTRFGREVTEEEIKTALAEEIARILHPVAIPLEPDLTRKPHVILMVGVNGTGKTTTIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++   D GL+ +L AGDTFR+AA++QL++W +R  A  +    G+DAA LA++A  +A
Sbjct: 122 KLAQSWKDQGLRSILVAGDTFRAAAVEQLQVWGERVGAPVISGPAGADAAGLAFDALAKA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA++ D+L+IDTAGRLHN   LM  + K+IRV+++ D   PHS+L VLDATTGQNA+ QV
Sbjct: 182 QAEQADILLIDTAGRLHNKGALMEELSKIIRVMRKHDETVPHSILLVLDATTGQNAVEQV 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  +   TGLI+TK+DG+ARGG ++ +     +PV+ +GVGE   DL PF A +F+  
Sbjct: 242 RVFKDMVNITGLIVTKLDGSARGGIVVALAEDFGLPVHAVGVGEKAGDLRPFDAMEFARG 301

Query: 310 ITG 312
           + G
Sbjct: 302 LVG 304


>gi|300854474|ref|YP_003779458.1| putative signal recognition particle GTPase [Clostridium
           ljungdahlii DSM 13528]
 gi|300434589|gb|ADK14356.1| predicted signal recognition particle GTPase [Clostridium
           ljungdahlii DSM 13528]
          Length = 449

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 152/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL+E +  +    +L +  +++ + +    L+ +D+   V +  ++ +  K  
Sbjct: 2   AFEGLASKLQETLKKLRGKGKLSEKDIKDAMREVKLALLEADVNYKVVKNFIKSVSEKCM 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E +  ++        ++ S+   VI++VG+ G GKTT+ GK
Sbjct: 62  GEEVLKSLTPAQQVIKIVNEELTLLMGKNESGIEYN-SNGLTVIMLVGLQGAGKTTMCGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++     K +LAA D +R AAI QL++                 A  +   A + A+
Sbjct: 121 LALQLRKKNKKPLLAACDIYRPAAIKQLQVVGKEIDVPVFSMGDKVTAVDICKGALEYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++V+IIDTAGRL  +  LM  + ++   +       P  ++ V+DA TGQ+A+    
Sbjct: 181 NNNLNVVIIDTAGRLQIDEELMGELKQIKENIN------PDEIMLVVDAMTGQDAVNVAS 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG  RGG  + I      P+ F+G+GE +NDL+ F     ++ I
Sbjct: 235 SFNEQLNISGVILTKLDGDTRGGAALSIRAMTDKPIKFVGMGEKMNDLQVFYPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|88706921|ref|ZP_01104620.1| signal recognition particle protein [Congregibacter litoralis KT71]
 gi|88698843|gb|EAQ95963.1| signal recognition particle protein [Congregibacter litoralis KT71]
          Length = 457

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + +  +    RL +        E+   L+ +D+ + V  + V  +  +   
Sbjct: 2   FQNLSERLTQSLRSVTGKARLSEDNIQGTLREVRMALLEADVALPVVTQFVNSVKERALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  L  V   +  ++   ++  +   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  QEVMSSLSPGQAFLKIVQAELESVMGAANEGLDLS-TQPPAVILLAGLQGAGKTTSAAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +    KV + + D +R AAI QL+  A     DF  S +      +A  A + A+
Sbjct: 121 ARLLKERDKKKVTVVSADVYRPAAIKQLETLAAEVGVDFFPSSVDQKPVDIALAAREHAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRL  ++ +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 IQFSDVLIVDTAGRLAVDADMMAEIAALEKAVT------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+D  +RGG  + +      P+ FLGVGE    L+PF     ++ I
Sbjct: 235 AFGEALPLTGVVLTKVDADSRGGAALSVRQITGKPIKFLGVGEKTEALDPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|300825114|ref|ZP_07105207.1| signal recognition particle protein [Escherichia coli MS 119-7]
 gi|300522386|gb|EFK43455.1| signal recognition particle protein [Escherichia coli MS 119-7]
          Length = 440

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 141/278 (50%), Gaps = 13/278 (4%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMP 98
               E+   L+ +D+ + V ++ +  +  K    +V+      Q  +  V   +   +  
Sbjct: 16  DTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGE 75

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQ 157
            ++  N   +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D +R AAI Q
Sbjct: 76  ENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQ 134

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+  A++   DF  S++G     +   A K+A+ K  DVL++DTAGRLH +  +M  I +
Sbjct: 135 LETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQ 194

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +   +       P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG  + 
Sbjct: 195 VHASIN------PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALS 248

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I      P+ FLGVGE    LEPF     ++ I G  D
Sbjct: 249 IRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGD 286


>gi|239624034|ref|ZP_04667065.1| signal recognition particle-docking protein FtsY [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239522065|gb|EEQ61931.1| signal recognition particle-docking protein FtsY [Clostridiales
           bacterium 1_7_47FAA]
          Length = 314

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 129/308 (41%), Positives = 183/308 (59%), Gaps = 4/308 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +A     +  +L +G A T   +  GI  I S    +DD   EE+E+ LI  D+G+    
Sbjct: 1   MAEGKKGFFGRLVEGLAKTRNNIVSGIDSIFSGFSAIDDDFYEEIEETLIMGDLGIQTTM 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVG 123
            IVE+L  K   + +       ++  LI+ +   +      ++F HR  V+LV+GVNGVG
Sbjct: 61  SIVEDLRAKVKEQHIKEPEECKEL--LINSIKEQMDLGENAYEFEHRKSVVLVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ ++ D+G KV+LAA DTFR+AAI+QL  WA R   D +  + GSD AA+ Y
Sbjct: 119 KTTSVGKLAGQLKDSGHKVILAAADTFRAAAIEQLTEWAGRAGVDIIAQQEGSDPAAVIY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+++K DVLI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQ
Sbjct: 179 DAVAAAKSRKADVLICDTAGRLHNKKNLMEELRKINRIIDKEYPDAYRETLVVLDGTTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F  VA  TG+I+TK+DGTA+GG  + I     +PV ++G+GE I+DL+ F A
Sbjct: 239 NALAQARQFMEVADITGIILTKLDGTAKGGIAVAIQSELGLPVKYIGIGEQIDDLQKFNA 298

Query: 304 KDFSAVIT 311
            DF   + 
Sbjct: 299 DDFVNALF 306


>gi|295696068|ref|YP_003589306.1| signal recognition particle-docking protein FtsY [Bacillus tusciae
           DSM 2912]
 gi|295411670|gb|ADG06162.1| signal recognition particle-docking protein FtsY [Bacillus tusciae
           DSM 2912]
          Length = 313

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 183/303 (60%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    +  +G   T   +   ++ ++   RRLDD + +ELE+LLI +D+GV  A + VE+
Sbjct: 1   MGLFDRFRQGLQKTREAVFGRMSSLVTGRRRLDDALFDELEELLILADVGVDQAVEWVED 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +   + V     L  +   +   ++               V+LVVGVNG GKTT +G
Sbjct: 61  LRKQARERGVREAGELRPLLRELLLDVLGRDSAPLQIHPGSLSVVLVVGVNGAGKTTTLG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +++  G KV+LAAGDTFR+ AI+QL +W  R   D +  + GSD AA+ ++A +  
Sbjct: 121 KLAHRLTGEGRKVLLAAGDTFRAGAIEQLHVWGSRAQVDVIRQQQGSDPAAVVFDAIQAG 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +++ VDV++ DTAGRLHN + LMA + K+ RV  R    APH VL V+DATTGQNAL Q 
Sbjct: 181 RSRGVDVVLCDTAGRLHNKTNLMAELEKIRRVAAREVDGAPHEVLLVIDATTGQNALTQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E+F   AG TG+++TK+DGTA+GG  + I     IPV F+GVGEGI DLEPF  + F   
Sbjct: 241 ELFSRSAGVTGVVLTKLDGTAKGGMALTIRRRLGIPVKFVGVGEGIEDLEPFDPEIFVDA 300

Query: 310 ITG 312
           + G
Sbjct: 301 LLG 303


>gi|312622773|ref|YP_004024386.1| signal recognition particle protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203240|gb|ADQ46567.1| signal recognition particle protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 443

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S S KL++    +    +L +  ++E +++    L+ +D+   V +  +  +  K   
Sbjct: 2   FSSLSEKLQDVFKKLRGKGKLTEKDIKEAMKEVKLALLEADVNYKVVKDFINTVTQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + +  +L        +  S    + ++VG+ G GKTT  GKL
Sbjct: 62  EEVLESLTPAQQVIKIVYDEMVNLLGGSDTKLAFSPSGF-SIYMLVGLQGSGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI QL+I A +            DA  +A E  + A+A
Sbjct: 121 AGLLKRQGKNPLLVACDIYRPAAIKQLEIVAQKVGVKCFADYNSKDAVKIAKEGIEFAKA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            + DV I+DTAGRLH N  LM  +  +   +K      P  +L VLDA TGQ+A+     
Sbjct: 181 SRCDVAIVDTAGRLHINQELMDELVAIKNAIK------PTEILLVLDAMTGQDAVNVAAA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+IMTK+DG  RGG  + +      P+ F GVGE + DLE F     ++ I 
Sbjct: 235 FNEQLGIDGIIMTKLDGDTRGGAALSVKAITGKPIKFAGVGEKMEDLEAFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|160880574|ref|YP_001559542.1| signal recognition particle-docking protein FtsY [Clostridium
           phytofermentans ISDg]
 gi|160429240|gb|ABX42803.1| signal recognition particle-docking protein FtsY [Clostridium
           phytofermentans ISDg]
          Length = 310

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 130/305 (42%), Positives = 183/305 (60%), Gaps = 4/305 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   +  +L  G A T   +   I  I   S  +DD   EELE+ LI +D+G+     I+
Sbjct: 3   EKKGFFSRLASGLAKTRDNVISSIESIFTGSSNIDDDFYEELEETLIMADLGINATTAII 62

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTT 126
           E L  K     +       D+  L+  M   +S +   ++F +   V+L++GVNGVGKTT
Sbjct: 63  ENLKNKVKENKIKEPSECRDL--LMASMREQMSLQENAYEFENHKSVVLLIGVNGVGKTT 120

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL+ ++ D+G KVM+AA DTFR+AAI+QL  WA+R   D +  + GSD AA+ Y+A 
Sbjct: 121 SVGKLAGQLKDSGKKVMVAAADTFRAAAIEQLTEWANRAHVDIIAQKEGSDPAAVIYDAV 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+++ VD+LI DTAGRLHN   LM  + K+ RV++R  P A    L VLD TTGQNAL
Sbjct: 181 TAAKSRNVDILICDTAGRLHNKKNLMEELRKIDRVIEREYPGAYRETLVVLDGTTGQNAL 240

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F+ VA  TG+++TK+DGTA+GG  I I    KIPV ++GVGE I+DL+ F   DF
Sbjct: 241 AQAKQFNEVADITGIVLTKLDGTAKGGIAIAIQSELKIPVKYIGVGEQIDDLQKFDPDDF 300

Query: 307 SAVIT 311
              + 
Sbjct: 301 VKALF 305


>gi|253797996|ref|YP_003030997.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           KZN 1435]
 gi|289553295|ref|ZP_06442505.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           KZN 605]
 gi|297635534|ref|ZP_06953314.1| signal recognition particle protein [Mycobacterium tuberculosis KZN
           4207]
 gi|297732533|ref|ZP_06961651.1| signal recognition particle protein [Mycobacterium tuberculosis KZN
           R506]
 gi|313659865|ref|ZP_07816745.1| signal recognition particle protein [Mycobacterium tuberculosis KZN
           V2475]
 gi|253319499|gb|ACT24102.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           KZN 1435]
 gi|289437927|gb|EFD20420.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           KZN 605]
 gi|328457770|gb|AEB03193.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           KZN 4207]
          Length = 525

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 143/311 (45%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTAALQGLRGKGRLTDADIDATTCEIRLALLEADVSLPVVRAFIHRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKTT+ GKL
Sbjct: 62  AEVSSALNPAQQVVKIVNEELISILGGETRELAF-AKTPPTVVMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++   G   +L A D  R AA++QL++  +R          G+   +   +    A A
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180

Query: 192 -------KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                  K  DV+I+DTAGRL  +  LMA    +   +       P  VL VLDA  GQ+
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAIN------PDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+     F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|152989330|ref|YP_001346757.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           PA7]
 gi|150964488|gb|ABR86513.1| signal recognition particle protein [Pseudomonas aeruginosa PA7]
          Length = 457

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V ++  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNKVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   + +++   ++      +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSKSLTPGQAFVKIVRAELEELMGAANEDLALSVA-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++  + D +R AAI QL+  A      F  S++     A+A  A ++A+
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLETLASEVGVTFFPSDVSQKPVAIAEAAIREAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH ++ +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHIDADMMDEIRQVHAAIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + +      P+ FLG+GE    L+PF     ++ I
Sbjct: 235 AFNDALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFLGMGEKSEALDPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|325294603|ref|YP_004281117.1| signal recognition particle-docking protein FtsY
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065051|gb|ADY73058.1| signal recognition particle-docking protein FtsY
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 473

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 118/309 (38%), Positives = 183/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            +K+       ++   +G   T   L          R +D+ + EELE+ LI +D+GV  
Sbjct: 164 EEKLGLSGSKLLKSFKEGLKKTRDALG---LSAFKGREVDESLFEELEEKLILADVGVNT 220

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             ++++ L  +   + +     L ++ +   K ++   +  +++ S +P VILV+GVNGV
Sbjct: 221 TLELIDYLRNEAKKRKIKSSDQLLELLKGKLKEMLSKCRG-SFNISEKPSVILVLGVNGV 279

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K++ + G  V+LAAGDTFR+AAI+QL++WA+R     +  + G+D AA+ 
Sbjct: 280 GKTTTIGKLAKQLKEKGYCVVLAAGDTFRAAAIEQLEVWAERAGVRIIKGQEGTDPAAVV 339

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A +  +AK  D+LI+DTAGRLHN   LM  I K+ +V+ R  P  P  +L VLDA TG
Sbjct: 340 FDAIQSVKAKGDDILIVDTAGRLHNKDRLMKEIHKIKKVIGREFPGQPAEILLVLDANTG 399

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q   F  +   TG+ +TK+DGTA+GG +I I    KIP+  +G+GE I DL  F 
Sbjct: 400 QNAISQARAFKEITDVTGIALTKLDGTAKGGIVIAICNDLKIPIKLVGIGEKIEDLRKFD 459

Query: 303 AKDFSAVIT 311
            K+F   + 
Sbjct: 460 PKEFVEGLF 468


>gi|222153046|ref|YP_002562223.1| signal recognition particle protein [Streptococcus uberis 0140J]
 gi|222113859|emb|CAR41999.1| signal recognition particle protein [Streptococcus uberis 0140J]
          Length = 521

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+     I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKAIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKRIRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q++L  V+E + ++L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQILKIVNEELTQILGSETAEI-VKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  + A
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVEIVTKGLELA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LMA +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RDNRNDYVLIDTAGRLQIDDKLMAELRDIKALAN------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 YEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|189345804|ref|YP_001942333.1| signal recognition particle-docking protein FtsY [Chlorobium
           limicola DSM 245]
 gi|189339951|gb|ACD89354.1| signal recognition particle-docking protein FtsY [Chlorobium
           limicola DSM 245]
          Length = 317

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 185/313 (59%), Gaps = 11/313 (3%)

Query: 11  LSWIR-----KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQ 64
           + +       +L +G + T    +E ++ I   +  +D+   EELE +L+ +D+GV    
Sbjct: 1   MGFFDKFKISRLKEGLSKTRDTFREKLSVITQGKTEIDEEFLEELETILVAADVGVETTL 60

Query: 65  KIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----PHVILVVGV 119
            IVE +  +   +   S + +   + E I ++L+        DF       P+VILVVGV
Sbjct: 61  AIVEAITERAKKETYRSGEELNRMLMEEIQQLLLDTDTAHPLDFDAPLPETPYVILVVGV 120

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT + KL+     AG KV++AA DTFR+AA +QLKIWADR     +    G+D A
Sbjct: 121 NGAGKTTSVAKLAHNYDKAGKKVIIAAADTFRAAAYEQLKIWADRAGVPLIGQGQGADPA 180

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+A   A ++ VDV+++DTAGRLHN + LM  + K++RV K+  P APH VL VLD 
Sbjct: 181 SVVYDAVSSAVSRNVDVVLVDTAGRLHNKAHLMEELAKIMRVAKKKVPAAPHEVLLVLDG 240

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA++Q   F      TGL++TK+DGT++GG ++ I    K+PV ++GVGE I+DL+
Sbjct: 241 TTGQNAVQQAREFTRFVNVTGLVLTKLDGTSKGGIVLSISRELKLPVKYIGVGEKIDDLQ 300

Query: 300 PFVAKDFSAVITG 312
            F  + F   + G
Sbjct: 301 LFDREKFVEALVG 313


>gi|325273825|ref|ZP_08140010.1| signal recognition particle protein [Pseudomonas sp. TJI-51]
 gi|324101031|gb|EGB98692.1| signal recognition particle protein [Pseudomonas sp. TJI-51]
          Length = 458

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKDRAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P V+L+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLALNAA-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++  + D +R AAI QL+  A+     F  S+I     A+A  A ++A+
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH ++ +MA I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHIDADMMAEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|220912974|ref|YP_002488283.1| signal recognition particle protein [Arthrobacter chlorophenolicus
           A6]
 gi|219859852|gb|ACL40194.1| signal recognition particle protein [Arthrobacter chlorophenolicus
           A6]
          Length = 527

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 146/314 (46%), Gaps = 26/314 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLTEADVDATVREIRRALLDADVAVPVVREFTSRVRERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E + ++L   ++       + P +I++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPSQQIVKIVNEELKEILGGETRRIRL-AKNGPTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC----------SEIGSDAAAL 181
           SK +   G   ML A D  R  A+ QL++   R +                    D  A+
Sbjct: 121 SKWLKSQGHSPMLVACDLQRPNAVTQLQVVGQRANVPVFAPHPGATSTELEHPAGDPVAV 180

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A    ++A+ K  DV+I+DTAGRL  ++ +M    ++ R +       P+ VL V+D+  
Sbjct: 181 ARAGVEEARQKLHDVVIVDTAGRLGVDADMMEQARQIRRAI------VPNEVLFVIDSMI 234

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+A+     F      TG++++K+DG ARGG  + +      PV F   GEG++D E F
Sbjct: 235 GQDAVNTALAFDEGVNFTGIVLSKLDGDARGGAALSVSSVTGKPVMFASTGEGLDDFELF 294

Query: 302 VAKDFSAVITGCLD 315
                ++ I    D
Sbjct: 295 HPDRMASRILDMGD 308


>gi|326803882|ref|YP_004321700.1| signal recognition particle protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650579|gb|AEA00762.1| signal recognition particle protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 491

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 139/307 (45%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L+  +  +    ++ +     +  E+   L+ +D+   V +  V ++  K  
Sbjct: 2   AFESLSDRLQGAVEKVGKKGKISEGDLREMMREVRLALLEADVNFKVVKNFVRKVQDKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+++  V E + ++L       N++ +  P +I++ G+ G GKTT +GK
Sbjct: 62  NSDVLESLSPTQQIVKIVDEELTELLGGEQVGINYNEAG-PTIIMMAGLQGAGKTTTVGK 120

Query: 131 LSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  + +    K +L A D +R AAIDQL+    +                +A +A   A
Sbjct: 121 LANHLREEDHRKPLLVAADVYRPAAIDQLETIGRQLDLPVFQLGNQVSPVDIAQKAVAYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D + IDTAGRL  +  LM  +  +   +       P  +L  +DA +GQ A    
Sbjct: 181 KENNYDTIFIDTAGRLQIDQTLMDELKNIQAAVH------PDEILLTVDAMSGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DG  RGG  + I      P+ F GVGE + D+E F     S  
Sbjct: 235 KTFDEELELTGVVLTKLDGDTRGGAALSIASITGKPIKFTGVGEKLEDIETFYPDRMSNR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|110635669|ref|YP_675877.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mesorhizobium sp. BNC1]
 gi|110286653|gb|ABG64712.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Chelativorans sp. BNC1]
          Length = 522

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   + ++     L +        E+   LI +D+ + V +   + +  K   
Sbjct: 2   FETLQERLGAILNNLTGRGALSEADVSAALREVRRALIEADVALDVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + + +ML    +  + + +  P V+++VG+ G GKTT  GK+
Sbjct: 62  AQVLKSVKPGQMVVKIVHDELVEMLGSEGESVDLN-APAPVVVMMVGLQGSGKTTTSGKI 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+MS   G KV++A+ DT R AA +QL+   ++T    +    G     +A  A + A+
Sbjct: 121 AKRMSERQGKKVLMASLDTRRPAAQEQLRQLGEQTGIATLPIVAGQTPVDIARRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LMA +  + R         PH +L V D+ TGQ+A+   +
Sbjct: 181 LGGHDVVILDTAGRTHIDEPLMAEMSDIRRASN------PHEILLVADSLTGQDAVNLAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +G GE ++ LE F  +  +  I
Sbjct: 235 NFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGTGEKMDALEEFHPRRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|325267254|ref|ZP_08133917.1| signal recognition particle protein [Kingella denitrificans ATCC
           33394]
 gi|324981315|gb|EGC16964.1| signal recognition particle protein [Kingella denitrificans ATCC
           33394]
          Length = 455

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 153/306 (50%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +  +   +I  + +L +D ++E L +    L+ +D+ + + +  V  +  +   
Sbjct: 2   LDNLTKRFTKVFKNIRGNAKLTEDNIKEALREVRLALLEADVSLPIVKDFVNRVKERALG 61

Query: 77  KD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++        Q     V+E + +++   +   N   S  P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEFADHLTPDQAFFGIVNEELTELMGSENSTLNL-ASAPPAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLKVML--AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           SK + D   K  +   + D +R AAI+QL++ A++ + DF  S+       +A  A   A
Sbjct: 121 SKLLKDQDKKKKILLVSADVYRPAAIEQLRLLAEQVNVDFFPSDTSQKPVEIALAAQDYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   
Sbjct: 181 KKHFYDVLMVDTAGRLAIDEEMMNEIKAIHAAVH------PVETLFVVDAMLGQDAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TKMDG +RGG  + +      P+ F+G+GE IN LEPF     ++ 
Sbjct: 235 QAFNEALPLTGVILTKMDGDSRGGAALSVRQVTGKPIKFMGIGEKINGLEPFYPDRIASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|260773522|ref|ZP_05882438.1| signal recognition particle subunit Ffh SRP54 [Vibrio metschnikovii
           CIP 69.14]
 gi|260612661|gb|EEX37864.1| signal recognition particle subunit Ffh SRP54 [Vibrio metschnikovii
           CIP 69.14]
          Length = 456

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V +  V  +      
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVSRVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++      +  P +IL+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVRHELETVMGAANE-ALNLAAQPPAIILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A+    DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSSADQKPIDIANAAVDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRL  + ++MA I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KKFYDVLIVDTAGRLAVDEVMMAEIKALHSAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ FLGVGE  + LE F     ++ I
Sbjct: 235 AFGDTLPLTGVILTKVDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEAFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|297202642|ref|ZP_06920039.1| signal recognition particle protein [Streptomyces sviceus ATCC
           29083]
 gi|197713217|gb|EDY57251.1| signal recognition particle protein [Streptomyces sviceus ATCC
           29083]
          Length = 537

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 149/309 (48%), Gaps = 19/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  ++ +  +   
Sbjct: 24  FDTLSDRLSATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIKNVKERALG 83

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      QRVL  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 84  PEVSGSQYPAQRVLDIVNEELVTILGGQTRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 142

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++ + + G   +L A D  R  A+ QL + A+R        E G+   D   +A ++ + 
Sbjct: 143 ARHLKEEGHSPLLVAADLQRPNAVTQLSVVAERAGVAVFAPEPGNGVGDPVKVAQDSVQH 202

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  D++I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 203 ARAKLHDIVIVDTAGRLGIDQELMQQAADI------RDAVSPDEILFVVDAMIGQDAVNT 256

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I      P+ F   GE ++D + F     ++
Sbjct: 257 AEAFRDGVGFDGVVLSKLDGDARGGAALSIASVTGKPIMFASNGEKLDDFDVFHPDRMAS 316

Query: 309 VITGCLDYG 317
            I    D  
Sbjct: 317 RILDMGDLA 325


>gi|57900093|dbj|BAD88155.1| putative chloroplast SRP receptor cpFtsY precursor [Oryza sativa
           Japonica Group]
 gi|215765041|dbj|BAG86738.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218189770|gb|EEC72197.1| hypothetical protein OsI_05275 [Oryza sativa Indica Group]
 gi|222619905|gb|EEE56037.1| hypothetical protein OsJ_04826 [Oryza sativa Japonica Group]
          Length = 363

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 186/311 (59%), Gaps = 6/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL--DDGVREELEDLLIRSDIGVAVA 63
           +  ++ S + KL  GF+ T   L   + ++++   L   D V +ELE+ L+ SD G  ++
Sbjct: 53  IQEKAKSDVEKLFSGFSKTRESLS-VVDELLTYWNLADTDRVLDELEEALLVSDFGPKIS 111

Query: 64  QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
            +IV+ L  + R  K  S   +   +   I ++L              +P VI++VGVNG
Sbjct: 112 FRIVDTLREEIRDGKLKSGAEIKEALKRCILELLTSKGGNPELQLGFRKPAVIMIVGVNG 171

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAA 180
            GKTT +GKL+ +  + G+KV++AAGDTFR+AA DQL++WA+RT ++ V   +  +  A+
Sbjct: 172 GGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAKPAS 231

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A K+ + +  D+++ DT+GRLH N  LM  +    +V+ +  P AP+ +L VLD T
Sbjct: 232 VLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGT 291

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L+Q   F+ V G TG ++TK+DGTARGG ++ +V    IPV F+GVGEG+ DL+P
Sbjct: 292 TGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQP 351

Query: 301 FVAKDFSAVIT 311
           F A+ F   I 
Sbjct: 352 FDAEAFVEAIF 362


>gi|239826587|ref|YP_002949211.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           WCH70]
 gi|239806880|gb|ACS23945.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           WCH70]
          Length = 329

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 126/309 (40%), Positives = 191/309 (61%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+  ++ S   K  +G + T       + D+I+  R++D+   EELE++LI +D+GV 
Sbjct: 8   KEKITKQADSVTEKFKQGLSKTRDSFAGRVNDLIARYRKVDEEFFEELEEILISADVGVN 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF-SHRPHVILVVG 118
              ++V+EL  +   +++   + +  V   +L+             +   +   VIL VG
Sbjct: 68  TVMELVDELKMEVKRRNIQDPKEMKAVISEKLVEIYRGDDDAKAELNIQENGLTVILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K+   G  VMLAAGDTFR+ AI+QL++W +R  A+ +    GSD 
Sbjct: 128 VNGVGKTTTIGKLAHKLKSEGKTVMLAAGDTFRAGAIEQLEVWGERVGAEVIKQSAGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL VLD
Sbjct: 188 AAVIYDAIQAAKARHVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVLLVLD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q ++F  V   TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL
Sbjct: 248 ATTGQNAMSQAKIFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGEKMDDL 307

Query: 299 EPFVAKDFS 307
           +PF  + + 
Sbjct: 308 QPFDPEQYV 316


>gi|313889472|ref|ZP_07823120.1| signal recognition particle protein [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313122304|gb|EFR45395.1| signal recognition particle protein [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 517

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    +I   R+L +     V +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQGVFKNIRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKQVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q+++  V+E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQIVKIVNEELTDILGSETATIE-KAPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +    A
Sbjct: 121 LANKLIKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDYPAVEIVRQGLTLA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENRNDYVLIDTAGRLQIDEKLMTELRDVKALAN------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 DEFNKQLEITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|312127773|ref|YP_003992647.1| signal recognition particle-docking protein ftsy
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777792|gb|ADQ07278.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 301

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 124/302 (41%), Positives = 190/302 (62%), Gaps = 4/302 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     E +  ++ S +++DD + EELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFFDRLKEGLSKTKKNFTEKVESLLKSFKQVDDDLFEELEEILVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +   + +   +V   V EL+ + ++ +    N      P +IL+VGVNGVGKTT IG
Sbjct: 61  LKERVKKERILDPQV---VKELLKEEMLNIINLENKLSERYPLIILMVGVNGVGKTTSIG 117

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++K +   G KV++AA DTFR+AA +QL+IWA R   D +    G+D AA+ ++  +  
Sbjct: 118 KIAKLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGADPAAVVFDGIQAM 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQNAL Q 
Sbjct: 178 RARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEAAKETLLVIDATTGQNALVQA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     +G+++TK+DGTA+GG +I I    KIPV F+GVGE I+DL+ F AK+F   
Sbjct: 238 KEFNQAVNISGIVLTKLDGTAKGGIVISICDELKIPVKFVGVGEKIDDLQQFNAKEFVDA 297

Query: 310 IT 311
           + 
Sbjct: 298 LF 299


>gi|313159547|gb|EFR58910.1| signal recognition particle-docking protein FtsY [Alistipes sp.
           HGB5]
          Length = 336

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 124/319 (38%), Positives = 181/319 (56%), Gaps = 6/319 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           S  + + E      +L  G   T   L   +   ++ R  +D  V ++LE++LI SD+GV
Sbjct: 14  SAAQASEERKQQQEELNAGLEKTKTGLFSKLARAVAGRSTVDADVLDDLEEVLISSDVGV 73

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFS-HRPHVIL 115
               KI+  +  +    K +    +   + E +  ++       K F  D     P+V++
Sbjct: 74  ETTVKIIRGIEERVARDKYMGTSELQSILREEVTALMEESHGSEKHFGLDAKEGEPYVVM 133

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNG GKTT IGKL+ +++ AG KV + A DTFR+AAIDQLK+WADR  A  +  E+G
Sbjct: 134 VVGVNGAGKTTTIGKLAAQLTKAGQKVWIGAADTFRAAAIDQLKVWADRAGATMIRQEMG 193

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++A++    A+A   DV++IDTAGRLHN   LM  + K+  V+ ++ P APH V+ 
Sbjct: 194 SDPASVAFDTLTSAKANGADVVLIDTAGRLHNKINLMNELTKIRNVMGKVIPGAPHEVML 253

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNA  Q   F      T L +TK+DGTA+GG +I I     IPV ++G+GEGI
Sbjct: 254 VLDGSTGQNAFEQARQFTQATQVTSLTITKLDGTAKGGVVIGISDQFHIPVRYIGIGEGI 313

Query: 296 NDLEPFVAKDFSAVITGCL 314
           + L  F  K+F   + G  
Sbjct: 314 DQLRIFDRKEFVKALFGDG 332


>gi|294102040|ref|YP_003553898.1| signal recognition particle-docking protein FtsY [Aminobacterium
           colombiense DSM 12261]
 gi|293617020|gb|ADE57174.1| signal recognition particle-docking protein FtsY [Aminobacterium
           colombiense DSM 12261]
          Length = 310

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 108/300 (36%), Positives = 168/300 (56%), Gaps = 2/300 (0%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             KL         +   G+  + S   +D+   + LE++LI  D+G+ + ++++EEL   
Sbjct: 4   WSKLKDSLKEVKNRWSGGLVSLFSGSTIDEEFWDSLEEILISGDVGIDLTEELIEELQKT 63

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              + +     L     +L+ + L+ +            P VI++VGVNG GKTT   KL
Sbjct: 64  VKREGLKTPDQLIAYFIDLVTERLVAVDGMGKEIVLDKSPKVIVLVGVNGSGKTTTAAKL 123

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++    G KV+L A DTFR+AAIDQLKIW +RT +  +  + GSD+AA+AY+A + A+A
Sbjct: 124 AEQFHRQGKKVILGAADTFRAAAIDQLKIWGERTGSRVIAQQQGSDSAAVAYDALQAARA 183

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLIIDTAGRLH+   LM  + K++RV++R         L VLDA  GQN   Q E 
Sbjct: 184 SGADVLIIDTAGRLHSKHNLMEELTKIVRVIEREVGRDSMENLLVLDAVMGQNGFAQAES 243

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH      G+I++K D TA+GG ++ I     +P+ ++G+GE ++DL  F  ++F   + 
Sbjct: 244 FHKALSLNGVILSKYDNTAKGGVILAIAHRLALPIRYIGLGESVDDLRLFEPQEFVRALL 303


>gi|153813988|ref|ZP_01966656.1| hypothetical protein RUMTOR_00195 [Ruminococcus torques ATCC 27756]
 gi|317501511|ref|ZP_07959709.1| signal recognition particle protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088014|ref|ZP_08336936.1| signal recognition particle protein [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848384|gb|EDK25302.1| hypothetical protein RUMTOR_00195 [Ruminococcus torques ATCC 27756]
 gi|316897140|gb|EFV19213.1| signal recognition particle protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409162|gb|EGG88617.1| signal recognition particle protein [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 453

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 152/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++ S  RL +        E++  L+ +D+   V +K V+++  +  
Sbjct: 2   AFDSLTEKLQNVFRNLRSKGRLTEDDVKAALREVKMALLEADVNFKVVKKFVKDVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +            VI++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEELVKLMGSETTEIKLQPGSAITVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G K +L A D +R AAI QL+I  ++   +       +  A +A  A   AQ
Sbjct: 122 LAGKYKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSMGDKNRPADIAKAALAHAQ 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++I+DTAGRLH +  +MA + ++   ++       H  + V+DA TGQ+A+   E
Sbjct: 182 KNGNNIVILDTAGRLHIDEDMMAELQQIKEAVE------VHQTILVVDAMTGQDAVNVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 SFHNKIGIDGVIVTKLDGDTRGGAALSIKAVTGRPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|108760294|ref|YP_633872.1| signal recognition particle-docking protein FtsY [Myxococcus
           xanthus DK 1622]
 gi|108464174|gb|ABF89359.1| signal recognition particle-docking protein FtsY [Myxococcus
           xanthus DK 1622]
          Length = 463

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 121/299 (40%), Positives = 177/299 (59%), Gaps = 2/299 (0%)

Query: 15  RKLTKGFASTSLK-LKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           R L +G   T  +     +  +    R++D+ V  ELE++L  +DIGV  A  +VE    
Sbjct: 164 RTLAQGLDKTRNQGFMARLNGLFGQQRQVDESVLAELEEILFTADIGVRTANHLVEVARE 223

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    ++     +  +       +  L  P + +    PHVI+VVGVNG GKTT IGKL+
Sbjct: 224 KLKRNELKDPERIKGLIRDEVARICDLPVPRSLEGGGPPHVIMVVGVNGAGKTTTIGKLA 283

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            K++  G KV+LAAGDTFR+AA +QL +WA+R  A  V    G D +A+ +EA K+A+ +
Sbjct: 284 SKLTSEGKKVVLAAGDTFRAAATEQLDVWAERAQAQLVKGAEGGDPSAVIFEAVKKAKEE 343

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV+I DTAGRLH  + LM  + K+ RV+ +  P APH VL VLD+T GQNA++Q + F
Sbjct: 344 GADVIIADTAGRLHTKAPLMEELKKVKRVMDKALPGAPHEVLLVLDSTNGQNAIQQAKQF 403

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           H   G + + +TK+DGTA+GG +I I    K+PV ++GVGE + DL  F  ++F   + 
Sbjct: 404 HEAVGVSAIALTKLDGTAKGGVVIGICDELKLPVVWVGVGEKVADLRRFEPREFVRALF 462


>gi|16800981|ref|NP_471249.1| hypothetical protein lin1915 [Listeria innocua Clip11262]
 gi|16414416|emb|CAC97145.1| ffh [Listeria innocua Clip11262]
          Length = 450

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GADVMKSLTPGQQVIKIVQEELTSLMGGEESKIGT-ADRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  +        P  +L V+D+ TGQ+A+   
Sbjct: 181 KEEHLDYVIIDTAGRLHIDETLMDELKQVKEIAT------PTEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+  GE +  +E F     ++ 
Sbjct: 235 QSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFVATGEKMEAIETFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|307565268|ref|ZP_07627761.1| signal recognition particle-docking protein FtsY [Prevotella amnii
           CRIS 21A-A]
 gi|307345937|gb|EFN91281.1| signal recognition particle-docking protein FtsY [Prevotella amnii
           CRIS 21A-A]
          Length = 317

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 120/302 (39%), Positives = 180/302 (59%), Gaps = 8/302 (2%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T   +   +   ++ +  +DD V + LE++L+ SD+GV    KI+  +  KR 
Sbjct: 15  LDKGLEKTKANVFSKLARAVAGKSTVDDDVLDNLEEILVTSDVGVDTTIKIIHRI-EKRV 73

Query: 76  AKD--VSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIG 129
           A+D  VS   +   +   I  +L   +             +P+VILVVGVNGVGKTT IG
Sbjct: 74  ARDKYVSTSELNAILKSEIANLLAENNTGDIANSEMLVGKKPYVILVVGVNGVGKTTTIG 133

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KV L A DTFR+AA++Q+ IW  R     +  ++G+D A++A++  + A
Sbjct: 134 KLAYQFKQAGKKVYLGAADTFRAAAVEQIDIWGKRVGVPVIKQQMGADPASVAFDTLQSA 193

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A   DV++IDTAGRLHN   LM  + K+  V+K++ P APH V+ VLD +TGQNA  Q 
Sbjct: 194 KANDADVVLIDTAGRLHNKVNLMNELKKIKEVMKKVIPDAPHEVMLVLDGSTGQNAFEQA 253

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F AV   + L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F  ++F   
Sbjct: 254 KQFAAVTQISSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFNKEEFVDS 313

Query: 310 IT 311
           + 
Sbjct: 314 LF 315


>gi|227890253|ref|ZP_04008058.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus johnsonii
           ATCC 33200]
 gi|268319235|ref|YP_003292891.1| signal recognition particle protein [Lactobacillus johnsonii
           FI9785]
 gi|227849067|gb|EEJ59153.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus johnsonii
           ATCC 33200]
 gi|262397610|emb|CAX66624.1| signal recognition particle protein [Lactobacillus johnsonii
           FI9785]
          Length = 476

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 151/307 (49%), Gaps = 18/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L++ + ++    ++ +        E+   L+ +D+   V +  ++++  +  
Sbjct: 2   AFENLSERLQKALKNLTGKGKISEADINDASREIRLALLEADVNFKVVKDFIKKIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V + + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQDSLNPGQQIIKIVDDELTKMMGEEAVSLNKS-PHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AA++QLK    +       SE   D A +     ++A
Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAMEQLKQIGQQLDVPVY-SEDNQDVAEIVKHGLEEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM     + RV +   P    + L V+DA TGQ A +  
Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDE---LKRVTEVAHP---DNTLLVVDAMTGQAATQVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I     +P+ F G GE + DL  F     ++ 
Sbjct: 234 EGFNNDLDLTGIVLTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 294 ILGMGDM 300


>gi|222100122|ref|YP_002534690.1| Signal recognition particle protein [Thermotoga neapolitana DSM
           4359]
 gi|221572512|gb|ACM23324.1| Signal recognition particle protein [Thermotoga neapolitana DSM
           4359]
          Length = 433

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 153/304 (50%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL     ++    ++ +  V++ + ++   L+ +D+   V ++ V+ +L K   
Sbjct: 2   FENLQEKLSRVFKNLSGRGKITEKNVKDAVREVKLSLLEADVNYKVVKEFVDHVLQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V + + K++   ++P      HRP  I++VG+ G GKTT   KL
Sbjct: 62  EEVLKSLTPDQQFIKIVRDELIKIMGEKNEPLRLI--HRPAPIMMVGLQGSGKTTTCAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G   +L A D +R AA+DQL    ++   + V  +       +  E  ++A+ 
Sbjct: 120 AKLLKKEGRNPLLVAADLYRPAAVDQLVKLGNQIGVNVV-HDYNKSPVEIVKEGIQEAER 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLI+DTAGRLH +  +M  + ++  +L       P  +L V+DA  GQ+A+   ++
Sbjct: 179 TGKDVLIVDTAGRLHIDEDMMRELEEIKAILN------PDEILLVVDAMMGQDAVNTAKV 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG ++TKMDG ARGG ++ I      PV F+G  E ++ LEPF     +  I 
Sbjct: 233 FDERLDLTGFVVTKMDGDARGGVILSIKYVTGKPVKFIGTSEKLDGLEPFHPDRIANRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|306973321|ref|ZP_07485982.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu010]
 gi|308357351|gb|EFP46202.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu010]
          Length = 525

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 143/311 (45%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKTT+ GKL
Sbjct: 62  AEVSSALNPAQQVVKIVNEELISILGGETRELAF-AKTPPTVVMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++   G   +L A D  R AA++QL++  +R          G+   +   +    A A
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180

Query: 192 -------KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                  K  DV+I+DTAGRL  +  LMA    +   +       P  VL VLDA  GQ+
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAIN------PDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+     F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|116873236|ref|YP_850017.1| signal recognition particle protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742114|emb|CAK21238.1| signal recognition particle protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 450

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GADVMKSLTPGQQVIKIVQEELTSLMGGEESKIGT-ADRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  +        P  +L V+D+ TGQ+A+   
Sbjct: 181 KEEHLDYVIIDTAGRLHIDETLMDELKQVKEIAT------PTEILLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + I      P+ F+  GE +  +E F     ++ 
Sbjct: 235 QSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFVATGEKMEAIETFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|227486503|ref|ZP_03916819.1| signal recognition particle protein Ffh [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227235506|gb|EEI85521.1| signal recognition particle protein Ffh [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 446

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 153/304 (50%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+E +  +    +L+    D    E+   L+ +D+   V +  V+ +  +   
Sbjct: 3   FESLSDRLQEALGKLTGKGKLNEKDIDNAMREIRLSLLEADVNYKVVKDFVKTIKERSLG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V+E +  ++   +          PH++++VG+ G GKTT  GKL
Sbjct: 63  TEVMNSLSPGQMVVKIVNEELTSLMGKENSKLAL-RGGTPHMVMMVGLQGSGKTTHSGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            K +       MLAA D +R AAI+QLK+   + +  FV  +   D   +A EA   A+ 
Sbjct: 122 VKMLQKENRNPMLAALDIYRPAAIEQLKVVGKQAN-TFVFEKGKEDPVKIAKEAKDYARI 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DTAGRL  ++ LM  +  +  V+K      P  +L V+DA TGQ A+   + 
Sbjct: 181 NNYDTVILDTAGRLQIDTDLMDELKAIKEVVK------PDEILLVVDAMTGQEAVNVAKS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG ARGG  + I      P+ F+GVGE ++DLEPF     ++ I 
Sbjct: 235 FDDYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGVGEKLDDLEPFYPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|308232280|ref|ZP_07415541.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu001]
 gi|308380512|ref|ZP_07490199.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu011]
 gi|308214486|gb|EFO73885.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu001]
 gi|308361235|gb|EFP50086.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu011]
          Length = 528

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 143/311 (45%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 5   FESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARG 64

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKTT+ GKL
Sbjct: 65  AEVSSALNPAQQVVKIVNEELISILGGETRELAF-AKTPPTVVMLAGLQGSGKTTLAGKL 123

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++   G   +L A D  R AA++QL++  +R          G+   +   +    A A
Sbjct: 124 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 183

Query: 192 -------KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                  K  DV+I+DTAGRL  +  LMA    +   +       P  VL VLDA  GQ+
Sbjct: 184 GLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAIN------PDEVLFVLDAMIGQD 237

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+     F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 238 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 297

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 298 RMASRILGMGD 308


>gi|150006884|ref|YP_001301627.1| putative signal recognition protein [Parabacteroides distasonis
           ATCC 8503]
 gi|255016084|ref|ZP_05288210.1| putative signal recognition protein [Bacteroides sp. 2_1_7]
 gi|256842126|ref|ZP_05547631.1| signal recognition particle protein [Parabacteroides sp. D13]
 gi|262384367|ref|ZP_06077502.1| signal recognition particle protein [Bacteroides sp. 2_1_33B]
 gi|298377310|ref|ZP_06987263.1| signal recognition particle protein [Bacteroides sp. 3_1_19]
 gi|301308707|ref|ZP_07214659.1| signal recognition particle protein [Bacteroides sp. 20_3]
 gi|149935308|gb|ABR42005.1| putative signal recognition protein [Parabacteroides distasonis
           ATCC 8503]
 gi|256736442|gb|EEU49771.1| signal recognition particle protein [Parabacteroides sp. D13]
 gi|262294070|gb|EEY82003.1| signal recognition particle protein [Bacteroides sp. 2_1_33B]
 gi|298265724|gb|EFI07384.1| signal recognition particle protein [Bacteroides sp. 3_1_19]
 gi|300833231|gb|EFK63849.1| signal recognition particle protein [Bacteroides sp. 20_3]
          Length = 445

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSERLDRSFKLLKGEGKITEINVAETLKDVRKALLDADVNYKVAKSFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++       + +    P +IL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTSVKPSQLMVKIVHDELASLMGG--TAVDVNLQGNPAIILMSGLQGSGKTTFTGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +LAA D +R AAI+QL++  ++            +   +A  A ++A+
Sbjct: 120 ASLLKTKKNKKPLLAACDVYRPAAIEQLRVVGEQVGVPVYMELENKNPVEIAMNAIREAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I  +   ++      P   L V+DA TGQ+A+    
Sbjct: 180 AKGNDVVIVDTAGRLAIDEQMMNEIAAIKSAIQ------PDETLFVVDAMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F  +  +  I
Sbjct: 234 EFNERLNFDGVVLTKLDGDTRGGAALSIRTVVDKPIKFVGTGEKMDALDIFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|15610053|ref|NP_217432.1| signal recognition particle protein [Mycobacterium tuberculosis
           H37Rv]
 gi|15842459|ref|NP_337496.1| signal recognition particle protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31794092|ref|NP_856585.1| signal recognition particle protein [Mycobacterium bovis AF2122/97]
 gi|121638797|ref|YP_979021.1| putative signal recognition particle protein ffh [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148662760|ref|YP_001284283.1| signal recognition particle protein Ffh [Mycobacterium tuberculosis
           H37Ra]
 gi|148824105|ref|YP_001288859.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           F11]
 gi|167969545|ref|ZP_02551822.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           H37Ra]
 gi|215404890|ref|ZP_03417071.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           02_1987]
 gi|215428357|ref|ZP_03426276.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           T92]
 gi|218754669|ref|ZP_03533465.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           GM 1503]
 gi|224991289|ref|YP_002645978.1| putative signal recognition particle protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|254233006|ref|ZP_04926333.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           C]
 gi|254365555|ref|ZP_04981600.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254551987|ref|ZP_05142434.1| putative signal recognition particle protein [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260187935|ref|ZP_05765409.1| putative signal recognition particle protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|260202051|ref|ZP_05769542.1| putative signal recognition particle protein [Mycobacterium
           tuberculosis T46]
 gi|260206234|ref|ZP_05773725.1| putative signal recognition particle protein [Mycobacterium
           tuberculosis K85]
 gi|289444471|ref|ZP_06434215.1| signal recognition particle protein [Mycobacterium tuberculosis
           T46]
 gi|289448581|ref|ZP_06438325.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           CPHL_A]
 gi|289575621|ref|ZP_06455848.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           K85]
 gi|289746715|ref|ZP_06506093.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           02_1987]
 gi|289751581|ref|ZP_06510959.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           T92]
 gi|289763092|ref|ZP_06522470.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           GM 1503]
 gi|294993988|ref|ZP_06799679.1| signal recognition particle protein [Mycobacterium tuberculosis
           210]
 gi|306968984|ref|ZP_07481645.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu009]
 gi|307085628|ref|ZP_07494741.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu012]
 gi|54039627|sp|P66845|SRP54_MYCBO RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|54042223|sp|P66844|SRP54_MYCTU RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|1405951|emb|CAA98978.1| PROBABLE SIGNAL RECOGNITION PARTICLE PROTEIN FFH (FIFTY-FOUR
           HOMOLOG) (SRP PROTEIN) [Mycobacterium tuberculosis
           H37Rv]
 gi|13882763|gb|AAK47310.1| signal recognition particle protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31619687|emb|CAD96627.1| PROBABLE SIGNAL RECOGNITION PARTICLE PROTEIN FFH (FIFTY-FOUR
           HOMOLOG) [Mycobacterium bovis AF2122/97]
 gi|121494445|emb|CAL72926.1| Probable signal recognition particle protein ffh [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|124602065|gb|EAY61075.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           C]
 gi|134151068|gb|EBA43113.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148506912|gb|ABQ74721.1| signal recognition particle protein Ffh [Mycobacterium tuberculosis
           H37Ra]
 gi|148722632|gb|ABR07257.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           F11]
 gi|224774404|dbj|BAH27210.1| putative signal recognition particle protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289417390|gb|EFD14630.1| signal recognition particle protein [Mycobacterium tuberculosis
           T46]
 gi|289421539|gb|EFD18740.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           CPHL_A]
 gi|289540052|gb|EFD44630.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           K85]
 gi|289687243|gb|EFD54731.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           02_1987]
 gi|289692168|gb|EFD59597.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           T92]
 gi|289710598|gb|EFD74614.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           GM 1503]
 gi|308353486|gb|EFP42337.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu009]
 gi|308364855|gb|EFP53706.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu012]
 gi|323718527|gb|EGB27698.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904530|gb|EGE51463.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           W-148]
          Length = 525

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 143/311 (45%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKTT+ GKL
Sbjct: 62  AEVSSALNPAQQVVKIVNEELISILGGETRELAF-AKTPPTVVMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++   G   +L A D  R AA++QL++  +R          G+   +   +    A A
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180

Query: 192 -------KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                  K  DV+I+DTAGRL  +  LMA    +   +       P  VL VLDA  GQ+
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAIN------PDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+     F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|227504770|ref|ZP_03934819.1| signal recognition particle protein [Corynebacterium striatum ATCC
           6940]
 gi|227198620|gb|EEI78668.1| signal recognition particle protein [Corynebacterium striatum ATCC
           6940]
          Length = 541

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 149/319 (46%), Gaps = 30/319 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+  ++ +    +L +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FESLSDRLQTALSGLRGKGKLTEADINATAREIRLALLEADVSLTVVRAFIKRIKERAAG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPAQQVIKIVNEELVDILGGETRRLQF-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           +K +S  G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 AKHLSKQGHTPMLVACDLQRPGAVQQLQIVGERAEVAVFAPDPGTSIDSHEHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+A    ++A+  + D++IIDTAGRL  +  LM     +       D   P  VL V+
Sbjct: 181 PVAVAQAGIEEAKRSQHDIVIIDTAGRLGIDETLMTQARNI------RDAVNPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+A++  E F      TG+++TK+DG ARGG  + I      P+ F   GE + D
Sbjct: 235 DSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLQD 294

Query: 298 LEPFVAKDFSAVITGCLDY 316
            + F  +  ++ I G  D 
Sbjct: 295 FDVFHPERMASRILGMGDL 313


>gi|217076198|ref|YP_002333914.1| ffh signal recognition particle protein [Thermosipho africanus
           TCF52B]
 gi|217036051|gb|ACJ74573.1| ffh signal recognition particle protein [Thermosipho africanus
           TCF52B]
          Length = 435

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 149/304 (49%), Gaps = 19/304 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F     KL +    +    ++ +  ++E ++ +   L+ +D+   V ++ + E+  K   
Sbjct: 2   FEGLQEKLSKAFKTLSGKGKITEKNIKEAIKMVKLSLLEADVNYKVVKEFIAEVTEKATG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  + + + +++   S+       H P  I++VG+ G GKTT   KL
Sbjct: 62  EEVLKSLTPDQMFIKILRDELIRVMGEKSQ---LSLVHSPSYIMMVGLQGSGKTTSAAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G K  L A DT+R AAIDQL     +        +   D   +  EA K+ + 
Sbjct: 119 ANLLKKKGKKTFLVAADTYRPAAIDQLITLGKKIDVPVFYGD-RKDPVKIVREAIKEVKD 177

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +V+I DTAGRLH +  +M  + ++  +L       P  +L V+DA  GQ+A+   ++
Sbjct: 178 SGYNVVIFDTAGRLHVDDEMMNELEEIKDILN------PDEILMVVDAMAGQDAVNSAKI 231

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG ++TKMDG ARGG ++ I      P+ F+GVGE I DLE F  +  ++ I 
Sbjct: 232 FNERLDVTGYVVTKMDGDARGGVILSIRYITNKPIKFIGVGEKIEDLEEFHPERIASRIL 291

Query: 312 GCLD 315
           G  D
Sbjct: 292 GLGD 295


>gi|308369898|ref|ZP_07419448.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu002]
 gi|308371174|ref|ZP_07424073.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu003]
 gi|308372291|ref|ZP_07428112.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu004]
 gi|308373572|ref|ZP_07432906.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu005]
 gi|308374725|ref|ZP_07437149.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu006]
 gi|308326097|gb|EFP14948.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu002]
 gi|308329661|gb|EFP18512.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu003]
 gi|308333800|gb|EFP22651.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu004]
 gi|308337194|gb|EFP26045.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu005]
 gi|308340925|gb|EFP29776.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu006]
          Length = 528

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 143/311 (45%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 5   FESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARG 64

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKTT+ GKL
Sbjct: 65  AEVSSALNPAQQVVKIVNEELISILGGETRELAF-AKTPPTVVMLAGLQGSGKTTLAGKL 123

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++   G   +L A D  R AA++QL++  +R          G+   +   +    A A
Sbjct: 124 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 183

Query: 192 -------KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                  K  DV+I+DTAGRL  +  LMA    +   +       P  VL VLDA  GQ+
Sbjct: 184 GLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAIN------PDEVLFVLDAMIGQD 237

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+     F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 238 AVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 297

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 298 RMASRILGMGD 308


>gi|159036836|ref|YP_001536089.1| signal recognition particle protein [Salinispora arenicola CNS-205]
 gi|157915671|gb|ABV97098.1| signal recognition particle protein [Salinispora arenicola CNS-205]
          Length = 514

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L    T +    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDTLSDRLSGIFTKLRGKGRLTDADIDATAREIRLALLEADVALPVVKGFIARVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L    +   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQIIKIVNEELINVLGGEGRRLQF-AKQPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +  +   G + +L A D  R  A+ QL++   R   +    E G+   D   +A  + + 
Sbjct: 121 ASWLRGQGHQPLLVAADLQRPNAVGQLQVLGGRAGVEVYAPEPGNGVGDPVQVAQASIEH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    D++I+DTAGRL  ++ +M     +       D   P  V+ V+DA  GQ+A+R 
Sbjct: 181 ARRAARDIVIVDTAGRLGIDAEMMRQAADI------RDAVDPDEVIFVIDAMVGQDAVRT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G TG++++K+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGITGVVLSKLDGDARGGAALSVREVTGQPILFASTGEKLEDFDVFHPDRMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|15615049|ref|NP_243352.1| signal recognition particle (docking protein) [Bacillus halodurans
           C-125]
 gi|10175106|dbj|BAB06205.1| signal recognition particle (docking protein) [Bacillus halodurans
           C-125]
          Length = 330

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 126/321 (39%), Positives = 190/321 (59%), Gaps = 5/321 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+++++     K   G   T       + D++   R +D+   EELE++LI +D+GV 
Sbjct: 8   KEKISTQTTEVTEKFKAGLEKTRDSFAGKMNDLVYKYRSVDEDFFEELEEILIGADVGVT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGV 119
               +VEEL  +   +++   + +   +SE + ++L         +       VILVVGV
Sbjct: 68  TVMDLVEELKDEVRRQNIKDSKDIQPIISEKLAELLEKEGGETEVNLQPAGLSVILVVGV 127

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+      G KV+LAAGDTFR+ AI+QL++W +R   D +    GSD A
Sbjct: 128 NGVGKTTSIGKLAHMYKQQGKKVILAAGDTFRAGAIEQLEVWGERAGVDVIKQSEGSDPA 187

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A + A++++ D+LI DTAGRL N   LM  + K+ RV+ R  P APH VL  LDA
Sbjct: 188 AVMFDAIQAAKSREADILICDTAGRLQNKVNLMKELEKVKRVISREIPGAPHEVLIALDA 247

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F      TG+I+TK+DGTA+GG ++ I     IPV F+G+GE I+DL+
Sbjct: 248 TTGQNAMSQAKTFKETTDVTGIILTKLDGTAKGGIVLAIRHELDIPVKFVGLGEKIDDLQ 307

Query: 300 PFVAKDFSAVITGCLDYGEEK 320
           PF ++ F   +    D  +E+
Sbjct: 308 PFDSEQFVYGLFK--DMVDEE 326


>gi|33591340|ref|NP_878984.1| signal recognition particle protein [Bordetella pertussis Tohama I]
 gi|33570982|emb|CAE40458.1| signal recognition particle protein [Bordetella pertussis Tohama I]
 gi|332380741|gb|AEE65588.1| signal recognition particle protein [Bordetella pertussis CS]
          Length = 469

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 86/317 (27%), Positives = 147/317 (46%), Gaps = 28/317 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V +  V  +  K   
Sbjct: 2   LDNLTQRLSRVVKTLRGEARLTEANTQEMLREVRMALLEADVALPVVRDFVARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++         + S     P VIL+ G+ G GKTT  
Sbjct: 62  EEVAGSLSPGQALVGVVHKELTSLMGGDLGEHAGELSLATQPPAVILMAGLQGAGKTTTT 121

Query: 129 GKLSKKM----------SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GKL++ +               KV++ + D +R AAI+QLK  A +   DF+ S++    
Sbjct: 122 GKLARWLSEGQHVQGGRKTGKKKVLVVSADVYRPAAIEQLKTVAAQVGVDFLPSDVSQKP 181

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A  A   A+    DVLI+DTAGRL  +  +M  I  +  ++K      P   L V+D
Sbjct: 182 EDIARNAIDHARRHHYDVLIVDTAGRLGIDEAMMREIRALHDLVK------PIETLFVVD 235

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+     F      TG+++TK+DG ARGG  + +      P+ F+GV E ++ L
Sbjct: 236 AMQGQDAVNTARAFGDALPLTGVVLTKLDGDARGGAALSVRHVTGKPLKFVGVSEKLDGL 295

Query: 299 EPFVAKDFSAVITGCLD 315
           EPF  +  +  + G  D
Sbjct: 296 EPFHPERMAQRVLGMGD 312


>gi|206890926|ref|YP_002249714.1| signal recognition particle protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742864|gb|ACI21921.1| signal recognition particle protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 440

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 12/278 (4%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLM 97
           D   +E+   L+ +D+   V +  +E +  K   K++       Q+V+  V E + ++L 
Sbjct: 28  DAALKEIRIALLEADVNFKVVKAFIERVRQKAVGKEILESLSPAQQVIKIVYEELCELLG 87

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             +        + P +I++VG++G GKTT   KL++     G + ML A D  R AAI+Q
Sbjct: 88  GSTSKIKLS-PNPPTIIMMVGLHGSGKTTTSAKLARLFKKQGRRPMLVAADLQRPAAIEQ 146

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L     +       S    D   L  +A K+A   + D +I+DTAGR+H +  LM  +  
Sbjct: 147 LVTLGKQIDVPVFHSYEIKDPRELCKDALKKAVIDRADPVIVDTAGRMHVDEELMRELQD 206

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +  VL       PH +L V DA TGQ+A+   + FH   G  G+I+TKMDG ARGG  + 
Sbjct: 207 VKNVLN------PHEILFVADAMTGQDAVNIAKSFHEKIGIDGVILTKMDGDARGGAALS 260

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I      P+  +G GE I+ ++ F     +  I G  D
Sbjct: 261 IKEVTGKPIKLIGTGEKIDAIDEFHPDRVANRILGMGD 298


>gi|269793026|ref|YP_003317930.1| signal recognition particle protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100661|gb|ACZ19648.1| signal recognition particle protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 447

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   + ++  T +    +L +        E+   L+ +D+   V +  VE +  +   
Sbjct: 2   FDSLKDRFEKVFTSLRGKGKLTEEDVKLALREVRLALLEADVNYKVVKDFVERVRQRATG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V   V E +  ++    KP +      P V ++VG+ G GKTT   K+
Sbjct: 62  QEVLSSITPAQQVYAIVFEELLDLMGREVKPLSIS-PKPPTVYMMVGLQGSGKTTTAAKI 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQ 190
           + KM  +  + ML A D  R AA++QL++ A      FV  E G  D   +A  A ++  
Sbjct: 121 ALKMKRS-HRPMLVACDLRRPAAVEQLRVLASTVGVPFVGPEEGETDPIRVARRALERCS 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VD++I+DTAGR   +  LM  +  +   +       PH VL V+D+ TGQ A+    
Sbjct: 180 ETLVDLVIVDTAGRFQIDQELMQEVQDLKGAVN------PHEVLLVVDSMTGQEAVSVAS 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+++TK+DG ARGG  + I      PV   G+GE ++DLE F     +  I
Sbjct: 234 AFNDRLGLTGVVLTKLDGDARGGAALAIRAVTGTPVRLAGLGEKVDDLEVFDPNKMAQRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|253731855|ref|ZP_04866020.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253724407|gb|EES93136.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 455

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    +L +     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + +++   +   N   +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMS-NKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML A D +R AAI+QL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P+ ++ V+D+ TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELKEVKEIAK------PNEIMLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 ESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|153808568|ref|ZP_01961236.1| hypothetical protein BACCAC_02864 [Bacteroides caccae ATCC 43185]
 gi|149128890|gb|EDM20107.1| hypothetical protein BACCAC_02864 [Bacteroides caccae ATCC 43185]
          Length = 440

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 150/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKNFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +     D   RP VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGET--VEVDIDARPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++ A++      C     +   +A  A ++A+
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIDVPMYCELESKNPVEIAQHAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  +   +       P+ +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDLVIVDTAGRLAVDEQMMNEIAAIKEAIN------PNEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|145219743|ref|YP_001130452.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205907|gb|ABP36950.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium
           phaeovibrioides DSM 265]
          Length = 449

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     +     +++        +++  L+ +D+   V +K+VE++  K   
Sbjct: 2   FESLSDKLEGAFKKLAGQATINEINIGIAMRDIKRALLGADVNYKVVKKLVEDVRQKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  VS+ + +++    KP     S  P V++V G+ G GKTT   KL
Sbjct: 62  EGVIKSVSPAQMIVKIVSDELTELMGGEQKPLALSSSRLPAVVMVAGLQGSGKTTFAAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K++  +G   +L A D +R AA+DQLK      S      E    A  +A +  + A+A
Sbjct: 122 AKRLKKSGRNPLLVAADVYRPAAVDQLKTLGAEVSVPVFSIEEKD-AMKVAMQGLEAAKA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLI+DTAGRL  +  +MA    +   LK      P  +L V+D+  GQ A+   + 
Sbjct: 181 GAHDVLIVDTAGRLQIDDAMMAEAEALKNALK------PDELLFVVDSMMGQEAVNTAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG +RGG  + I    + P+ F+ VGE ++DL+ F     +  I 
Sbjct: 235 FNDRLDFDGVVLTKLDGDSRGGAALSIRHVVEKPIKFMSVGEKVDDLDQFYPDRMAQRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|299137338|ref|ZP_07030520.1| signal recognition particle protein [Acidobacterium sp. MP5ACTX8]
 gi|298600743|gb|EFI56899.1| signal recognition particle protein [Acidobacterium sp. MP5ACTX8]
          Length = 460

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/322 (31%), Positives = 154/322 (47%), Gaps = 28/322 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+     +     L D        E+   L+ SD+ + VA+ ++E + TK   
Sbjct: 2   FENLSEKLQRSFKTLRGQGTLTDENINDALREIRLALLESDVNLNVAKDLIEHIRTKALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V+      ++++  V + + ++L   +  F +  S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  SQVATALSPAEQIVKIVRDELVEVLGRDTARFKF-ASQPPTVILMAGLQGSGKTTTSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA------AALAYEA 185
           ++ +   G + ML + D +R AA +QLK+ A   +A     +   +A        LA EA
Sbjct: 121 AQWLKKGGHRPMLVSVDVYRPAAREQLKVVAQSINAQIYEGDTKGEAAGTPLVERLAREA 180

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++A     D+LI+DTAGRL  +  LM  +  + + L       P  +L V DA TGQ+A
Sbjct: 181 RREAANYGCDILIVDTAGRLGIDEALMEEMALLKKQLN------PSEILFVADAMTGQDA 234

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +   + F+     TG I+TKMDG +RGG  + I      PV FLG GE  +  EPF    
Sbjct: 235 VNSAKAFNDKLTITGSILTKMDGDSRGGAALSIRQITGQPVKFLGTGEKSDAFEPFHPDR 294

Query: 306 FSAVITGCLDY------GEEKI 321
               I G  D        +EK+
Sbjct: 295 IVGRILGMGDIATLLERADEKL 316


>gi|320104118|ref|YP_004179709.1| signal recognition particle-docking protein FtsY [Isosphaera
           pallida ATCC 43644]
 gi|319751400|gb|ADV63160.1| signal recognition particle-docking protein FtsY [Isosphaera
           pallida ATCC 43644]
          Length = 309

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 128/305 (41%), Positives = 186/305 (60%), Gaps = 10/305 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           SWI +L  G A T       + D+ S   R +D    E LE  L+++D+GV   ++++++
Sbjct: 3   SWIERLKAGLAKT-----AKLLDVRSWLGRTVDQSFLERLEAQLLQADVGVKATERLLQK 57

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW--DFSHRPHVILVVGVNGVGKTTV 127
           +      K  + + +L  V   +  +L P              P  +L+ GVNG GKTT 
Sbjct: 58  VKEGFEGK-TADEDLLAFVKAELINLLTPAGGAPEAIRYAPTPPTTLLIAGVNGSGKTTS 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           + KL+ ++   G  ++LAA DTFR+AA DQL +WA RT AD V  + G+D A++A++A  
Sbjct: 117 VAKLTHRIRSEGKSLVLAACDTFRAAAADQLAVWAQRTGADLVRGQTGADPASVAHDACD 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A A+K DVL++DTAGRLH  + LM  + K+  VL+R  P+APH V  VLD T GQNA+R
Sbjct: 177 RALARKADVLMVDTAGRLHTQTHLMRELEKIRNVLQRKIPNAPHEVFLVLDGTAGQNAIR 236

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q EMF    G TG+I+TK+DGTA+GG  + I  T  +PV F+GVGEGI+DL+PF A++F 
Sbjct: 237 QAEMFSKSIGCTGIILTKLDGTAKGGVAVAIRQTLDLPVRFIGVGEGIDDLQPFRAEEFV 296

Query: 308 AVITG 312
           A + G
Sbjct: 297 ASLFG 301


>gi|148549466|ref|YP_001269568.1| signal recognition particle protein [Pseudomonas putida F1]
 gi|148513524|gb|ABQ80384.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pseudomonas
           putida F1]
 gi|313500314|gb|ADR61680.1| Ffh [Pseudomonas putida BIRD-1]
          Length = 458

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKDRAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P V+L+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLALNAA-PPAVVLMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++  + D +R AAI QL+  A+     F  S+I     A+A  A ++A+
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLETLANDIGVTFFPSDISQKPVAIAEAAIREAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH ++ +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHIDADMMDEIKALHAAVK------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I
Sbjct: 235 AFGEALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFIGMGEKTEALEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|291299748|ref|YP_003511026.1| signal recognition particle protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290568968|gb|ADD41933.1| signal recognition particle protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 519

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 146/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +    RL +   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDSLSERLSGIFNSLRGKGRLSEADIDATAREIRMALLEADVALPVVKSFIHNVKERCRG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++  ++   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSKALNPGQQVIKIVNEELITILGGEARRLSF-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---GSDAAALAYEAFKQ 188
           +K + D   + ML A D  R  A+ QL++  +R   +    E      D   +A E+   
Sbjct: 121 AKWLKDQNHQPMLVAADLQRPNAVQQLQVLGERAGVEVYAPEPGSGVGDPVKVAKESLAH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A     D++IIDTAGRL  +  +MA    +       D   P   L V+DA  GQ+A+  
Sbjct: 181 ATRHARDIVIIDTAGRLGVDEEMMAQAAAI------RDATNPDETLFVIDAMIGQDAVAT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G +G++++K+DG ARGG  + +      P+ F  +GE + D + F  +  ++
Sbjct: 235 AEAFRDGVGISGVVLSKLDGDARGGAALSVRQVTGQPIMFASIGEKLEDFDVFYPERMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|224024147|ref|ZP_03642513.1| hypothetical protein BACCOPRO_00869 [Bacteroides coprophilus DSM
           18228]
 gi|224017369|gb|EEF75381.1| hypothetical protein BACCOPRO_00869 [Bacteroides coprophilus DSM
           18228]
          Length = 443

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKNFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + K++   +     +  +RP VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTKLMGGDTAEI--ELKNRPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QLK+   +            +   +A  A ++A+
Sbjct: 120 ARMLKMKKNRKPLLVACDVYRPAAIEQLKVLGQQVEVPVYSEPESKNPVQIALNAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A+    
Sbjct: 180 AKGYDLVIVDTAGRLAIDEQMMNEIEAIKNAIN------PDETLFVVDAMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRTVVNKPIKFVGTGEKLDAVDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|209559470|ref|YP_002285942.1| Signal recognition particle, subunit Ffh SRP54 [Streptococcus
           pyogenes NZ131]
 gi|209540671|gb|ACI61247.1| Signal recognition particle, subunit Ffh SRP54 [Streptococcus
           pyogenes NZ131]
          Length = 520

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 147/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L++    I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFENLTQRLQDVFKHIRGKKKLSESDVQEVTKEIRLALLEADVALPVVKTFIKRVRERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q++L  V+E +  +L   +   +      P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQILKIVNEELTSILGSETAEIDKS-PKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +  +QA
Sbjct: 121 LANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 RENRNDYVLIDTAGRLQIDEKLMEELRDVKAL------AQPNEILLVVDSMIGQEAANIA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG+++TK+DG  RGG  + +      P+ F G+GE I D+E F     S+ 
Sbjct: 235 YEFNHQLSITGVVLTKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|33594352|ref|NP_881996.1| cell division protein [Bordetella pertussis Tohama I]
 gi|33564427|emb|CAE43736.1| cell division protein [Bordetella pertussis Tohama I]
 gi|332383763|gb|AEE68610.1| cell division protein [Bordetella pertussis CS]
          Length = 369

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 180/307 (58%), Gaps = 11/307 (3%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SW+ +L +G + T   +      +    ++D+ + EELE  LI +D G+   +K++  
Sbjct: 67  KASWLSRLKQGLSRTGQNIGG----LFVGVKVDENLFEELESALIMADAGIEATEKLLAA 122

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   + +     +   + +L+   L PL + F+   +  P V+++ GVNG GKTT I
Sbjct: 123 LRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRAQ-PLVVMIAGVNGAGKTTSI 181

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G  V+LAAGDTFR+AA +QL  W  R +   + S+ G D AA+A+++   
Sbjct: 182 GKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVI-SQDGGDPAAVAFDSVNA 240

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+ V V+++DTAGRL     LM  + K+ RV+ + +  APH VL V+D  TGQNAL Q
Sbjct: 241 GRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQ 300

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAK 304
           +  F A    TGL++TK+DGTA+GG L  +    +    IPVY++GVGEG+ DL+PFVA 
Sbjct: 301 IRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVAD 360

Query: 305 DFSAVIT 311
           +F+A + 
Sbjct: 361 EFAAALL 367


>gi|332286877|ref|YP_004418788.1| cell division protein [Pusillimonas sp. T7-7]
 gi|330430830|gb|AEC22164.1| cell division protein [Pusillimonas sp. T7-7]
          Length = 378

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 121/309 (39%), Positives = 182/309 (58%), Gaps = 11/309 (3%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E  SW+ +L KG + T   L      +    ++D+ + EELE  LI +D GV   +K++ 
Sbjct: 75  EKSSWLSRLKKGLSRTGQNLGG----LFVGVKVDESLFEELETALIMADAGVEATEKLLT 130

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +   + +     +   + +++   L PL K F    +  P V+++ GVNG GKTT 
Sbjct: 131 ALRARVRKERLEDAGQVKTALRDILADHLAPLEKSFPLGKTA-PLVVMIAGVNGAGKTTS 189

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+      G KV+LAAGDTFR+AA +QL  W  R +   +  + G D AA+A++A  
Sbjct: 190 IGKLANHFQAQGAKVLLAAGDTFRAAAREQLVEWGARNNVAVIAQD-GGDPAAVAFDAVN 248

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A++  V++IDTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNA+ 
Sbjct: 249 AGRAREAGVVMIDTAGRLPTQLHLMEELKKIKRVIGKADGAAPHEVLLVIDGNTGQNAIA 308

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVA 303
           Q+  F A    TGL++TK+DGTA+GG L  +    +    +PVY++GVGE ++DL+PFVA
Sbjct: 309 QIRAFDAALSLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGESLHDLQPFVA 368

Query: 304 KDFSAVITG 312
           K+F+A + G
Sbjct: 369 KEFAAALLG 377


>gi|313673049|ref|YP_004051160.1| signal recognition particle-docking protein ftsy [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939805|gb|ADR18997.1| signal recognition particle-docking protein FtsY [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 325

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 133/312 (42%), Positives = 195/312 (62%), Gaps = 4/312 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGV 60
           ++++   +   ++ +L +G + TS KL  GI  II   +++DD + EELE+L I +DIGV
Sbjct: 12  NDEQREEDEKGFLNRLKEGLSKTSSKLVGGIEAIILGRKKIDDDLLEELEELFITADIGV 71

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               KI+E++        +     L + + + + K+L   +     D S  P VILVVGV
Sbjct: 72  NTTIKIIEKVKNDVSRNILKDPVELKNAIKDELIKILSIDNSLKKVDTS--PFVILVVGV 129

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT I KL++   + G  V+LAAGDTFR+AAIDQL++W DR     V    GSD+A
Sbjct: 130 NGTGKTTTIAKLARMFKNNGFSVLLAAGDTFRAAAIDQLQVWGDRIGVPVVKQSEGSDSA 189

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A + A+A+  D++I DTAGRLHN   LM  + K+++VL +    APH VL V+DA
Sbjct: 190 AVIYDAVESAKARGNDIVIADTAGRLHNKFNLMNELKKIVKVLGKSVVDAPHEVLLVIDA 249

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           T+GQNA+ Q + F    G TG+++TK+DGTA+GG ++ IV    IPV F+G GE ++DL+
Sbjct: 250 TSGQNAIEQAKRFKEDVGVTGIVLTKLDGTAKGGVIVGIVDETGIPVKFIGFGEKMDDLK 309

Query: 300 PFVAKDFSAVIT 311
           PF AK F   + 
Sbjct: 310 PFDAKLFVDALF 321


>gi|148544381|ref|YP_001271751.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri DSM 20016]
 gi|184153745|ref|YP_001842086.1| signal recognition particle receptor [Lactobacillus reuteri JCM
           1112]
 gi|227363194|ref|ZP_03847328.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri MM2-3]
 gi|325682701|ref|ZP_08162217.1| cell division protein FtsY [Lactobacillus reuteri MM4-1A]
 gi|148531415|gb|ABQ83414.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri DSM 20016]
 gi|183225089|dbj|BAG25606.1| signal recognition particle receptor [Lactobacillus reuteri JCM
           1112]
 gi|227071800|gb|EEI10089.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri MM2-3]
 gi|324977051|gb|EGC14002.1| cell division protein FtsY [Lactobacillus reuteri MM4-1A]
          Length = 508

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 180/311 (57%), Gaps = 5/311 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S +    +    ++K  +G   +       +   +++ R +D+   ++LED+LI SD+G 
Sbjct: 187 SPEPEEDQETETVKKYDRGLEKSRTGFGARLNKFLANFRHVDEDFFDDLEDMLIESDVGY 246

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDF---SHRPHVILV 116
            +A K+ +EL  +   ++   ++ + +V  E + ++     +  N D       P VI+ 
Sbjct: 247 DMAMKLSDELREEVKLQNAKSKQDVSNVIIEKMVELYDEAGQDENPDLTMAKEGPTVIMF 306

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT IGK++      G KV+LAA DTFR+ A +QL +WA R   D V      
Sbjct: 307 VGVNGAGKTTTIGKMAALFKKQGKKVLLAAADTFRAGATEQLDVWAKRDGVDIVTGPENG 366

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A K+A+ +  D+L +DTAGRL N   LM  + KM R+L R  P APH VL V
Sbjct: 367 DPAAVVFDAVKRAKDENYDILFVDTAGRLQNKVNLMNELAKMKRILTREIPDAPHEVLLV 426

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL Q ++F      TG+++TK+DGTARGG ++ I     +PV ++G+GE ++
Sbjct: 427 LDATTGQNALNQAKLFKESTDVTGIVLTKLDGTARGGIVLAIRNELHLPVKYVGLGEKVD 486

Query: 297 DLEPFVAKDFS 307
           DL+ F A DF 
Sbjct: 487 DLQKFDAGDFV 497


>gi|73662841|ref|YP_301622.1| signal recognition particle [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495356|dbj|BAE18677.1| signal recognition particle [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 455

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 145/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLSDRLQGTMQKIRGKGKVTEADIKLMMREVRLALLEADVNFKVVKDFVKTVSDRAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E + +++   +       +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMKSLTPGQQVIKIVQEELTQLMGGENSTITM-ANKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML A D +R AAIDQL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPMLVAADIYRPAAIDQLQTVGKQIDIPVYSEGDQVKPQQIVENAIKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  +  +  + K      P  ++ V+DA TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHVDEALMQELSDVKEITK------PDEIMLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      +G+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LEPF  +  ++ 
Sbjct: 235 QSFDEQLEVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|228469419|ref|ZP_04054433.1| signal recognition particle protein [Porphyromonas uenonis 60-3]
 gi|228309103|gb|EEK17733.1| signal recognition particle protein [Porphyromonas uenonis 60-3]
          Length = 446

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    R+ +       +++   L+ +D+   VA+   +++  K   
Sbjct: 2   FENLSERLERSFKILKGQGRITEINVAETLKDVRRALLDADVNYNVARDFTDQVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   S+  + +    P +IL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVNPGQMMVKIVHDELATLMG--SEAVSVNLKGSPAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAI QL +  ++            D   +A  A   AQ
Sbjct: 120 ANMLQKQEQRKPLLVACDVYRPAAIQQLHVLGEQIGVPVYSEPESKDPVQIARNAIAHAQ 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D +IIDTAGRL  +  +M  I  +   +       P   L V+D+ TGQ+A+    
Sbjct: 180 QEGLDTVIIDTAGRLAVDEEMMNEISSIKEAI------RPDETLFVVDSMTGQDAVNTAA 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F       G+I+TK+DG +RGG  + I      P+ F+G GE +  L+ F     +  I
Sbjct: 234 EFDKRLDFDGVILTKLDGDSRGGAALSIRSVVNKPIKFVGTGEKMEALQVFHPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|330717912|ref|ZP_08312512.1| signal recognition particle-docking protein FtsY [Leuconostoc
           fallax KCTC 3537]
          Length = 354

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 114/295 (38%), Positives = 170/295 (57%), Gaps = 6/295 (2%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   +     E     +++ R +D+   ++LE+ LI SD+G  +  +I +EL  +   K
Sbjct: 50  KGLTKSRGGFAERFNRFLANFRTVDEDFFDDLEETLIGSDVGFDMVIRISDELREEVKLK 109

Query: 78  DVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +   +  + DV      ++  +         ++  + +P +I+ VGVNGVGKTT IGKL+
Sbjct: 110 NAKRKEDVSDVIIKKLVDIYEEEGSGEDNQMHFAPTGQPTIIMFVGVNGVGKTTTIGKLA 169

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +   AG +V+LAA DTFR+ A  QL+ W        V  +  SD A++ +EA K+A+ +
Sbjct: 170 SQYQKAGKRVLLAAADTFRAGATKQLQEWGAIAQVPVVAGKDKSDPASVVFEAVKRARDE 229

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DVL IDTAGRL NN  LM  + KM RV++R  P APH VL VLDATTGQNA++Q ++F
Sbjct: 230 AYDVLFIDTAGRLQNNFNLMQELEKMKRVVQREIPDAPHEVLLVLDATTGQNAIQQAKLF 289

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 TG+++TKMDGTA+GG +  I     +PV ++G GE   DL  F  ++F 
Sbjct: 290 KDSTDVTGIVLTKMDGTAKGGIVFAIRSEMHLPVKWIGFGEKATDLRVFKPEEFV 344


>gi|295091755|emb|CBK77862.1| signal recognition particle-docking protein FtsY [Clostridium cf.
           saccharolyticum K10]
          Length = 311

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 180/308 (58%), Gaps = 4/308 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++     +  +L +G   T   +  GI  I S    +DD   EE+E+ LI  D+G+    
Sbjct: 1   MSEGRKGFFGRLVEGLTKTRNSIVAGIDTIFSGFSAIDDDFYEEIEETLIMGDLGIQTTM 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVG 123
            I+E+L  K   + +       ++  LI  +   +      ++F +R  V+LV+GVNGVG
Sbjct: 61  AIMEDLRAKVKERHIKEPSDCKEL--LIESIRSQMDLGENAYEFENRKSVVLVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ ++   G KV+LAA DTFR+AAI+QL  WA+R   D +  + GSD AA+ Y
Sbjct: 119 KTTSVGKLAGQLKGQGKKVILAAADTFRAAAIEQLTEWANRAGVDLIAQQEGSDPAAVIY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+++  DVLI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQ
Sbjct: 179 DAIAAAKSRHADVLICDTAGRLHNKKNLMEELKKINRIIDKEFPEAYRETLVVLDGTTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F  VA  TG+I+TK+DGTA+GG  + I     IPV ++G+GE I+DL+ F A
Sbjct: 239 NALSQAKQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYVGIGEKIDDLQKFNA 298

Query: 304 KDFSAVIT 311
            DF   + 
Sbjct: 299 NDFVNALF 306


>gi|237723193|ref|ZP_04553674.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293372708|ref|ZP_06619090.1| signal recognition particle protein [Bacteroides ovatus SD CMC 3f]
 gi|229447715|gb|EEO53506.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292632517|gb|EFF51113.1| signal recognition particle protein [Bacteroides ovatus SD CMC 3f]
          Length = 440

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 150/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKIFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +   N D   RP VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGETAEINIDA--RPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++ A++      C     +   +A  A ++A+
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYCELDSKNPVEIAQHAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  + + +       P  +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDLVIVDTAGRLAVDEQMMNEIAAIKKAIN------PDEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLEAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|188588867|ref|YP_001920590.1| signal recognition particle protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251780688|ref|ZP_04823608.1| signal recognition particle protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188499148|gb|ACD52284.1| signal recognition particle protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243085003|gb|EES50893.1| signal recognition particle protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 452

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F     KL+E    +    +L +  ++E + +    L+ +D+   V +  +  + +K  
Sbjct: 2   AFEGLGEKLQETFRKLKGKGKLTEKDIKEAMREVKLALLEADVNYKVVKGFISTVSSKCV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E +  ++       N+  S    VI++VG+ G GKTT+ GK
Sbjct: 62  GNEVLESLTPGQQVIKIVNEELTNLMGGSESKINYSSSGT-TVIMLVGLQGAGKTTMCGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++     K +L A D +R AAI QL+I   +            +   +A       +
Sbjct: 121 LALELRKNNKKPLLVACDVYRPAAIKQLEIVGKQIEIPVFSMGDKVNPVDIAKAGIAHGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++IIDTAGRLH +  LM  +  +   +       P  +L V+D+ TGQ+A+   E
Sbjct: 181 DNGNNIIIIDTAGRLHIDEALMQELQDIKENVN------PSEILLVVDSMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + I    + P+ ++G GE ++D E F     S+ I
Sbjct: 235 SFNNDLDVTGVILTKLDGDTRGGAALSIRNITEKPIKYIGTGEKLSDFEVFHPDRMSSRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|328952743|ref|YP_004370077.1| signal recognition particle-docking protein FtsY [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453067|gb|AEB08896.1| signal recognition particle-docking protein FtsY [Desulfobacca
           acetoxidans DSM 11109]
          Length = 405

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 120/305 (39%), Positives = 178/305 (58%), Gaps = 4/305 (1%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVE 68
                R+L    + T   L   +  +   +++ D  + EELE+LLI +D+GV  +  ++E
Sbjct: 103 KPGLFRRLRARLSRTREALTSKLDRLFLGKKIIDAELLEELEELLITADMGVETSLGLIE 162

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            +  K   K+++    L   +   +  +L  ++ P       +PHV++V+GVNGVGKTT 
Sbjct: 163 AVRDKVKRKELTDPARLKTHLKAEMLTLLTGVAVP--PLHPGKPHVVMVIGVNGVGKTTT 220

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL+    + G KV+L A DTFR+AAI+QL+IW  R  A  +  + GSD AA+ ++   
Sbjct: 221 IAKLAHHDLEQGEKVLLVAADTFRAAAIEQLEIWGQRAGAAVIKQKTGSDPAAVVFDGLA 280

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A++VD + IDTAGRLH    LM  + K+ R   +    APH VL VLDATTGQNA+ 
Sbjct: 281 AALARRVDKVYIDTAGRLHTKVNLMEELKKVARTAAKQIEGAPHEVLLVLDATTGQNAIN 340

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q  +FH   G TG+IMTK+DGTA+GG  + +V    +P+ F+GVGE ++DL PF  + + 
Sbjct: 341 QARLFHEAIGVTGIIMTKLDGTAKGGVALGVVQETGLPLQFIGVGEQMDDLRPFEPEAYL 400

Query: 308 AVITG 312
             I G
Sbjct: 401 EAILG 405


>gi|309775679|ref|ZP_07670678.1| signal recognition particle protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916585|gb|EFP62326.1| signal recognition particle protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 471

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L +   +I    +L +     +  E+   L+ +D+   V +  +  +  +  
Sbjct: 2   AFESLSERLGKAFKNITGKGKLSEKNMNDMLREVRMSLLEADVNYGVVKDFIARVKEQAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q V+  V + I  +L     P N+  S+    +++VG+ G GKTT   K
Sbjct: 62  GTEVMNSLNPGQMVVKIVHDEIVALLGSEDAPVNYK-SNGITTVMMVGLQGTGKTTASAK 120

Query: 131 LSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++         K +L A D  R AAI+QLK   +    +     + + A   A +A + A
Sbjct: 121 IANVMKKKQNRKPLLVACDVIRPAAIEQLKTLGESIGVEVFSLGVETKALETAKQAMEYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++ DTAGRLH +  LM  +  +   +       P  +L  +DA TGQ+ +   
Sbjct: 181 KENGYDTVLFDTAGRLHIDEELMQELSDIKAYVH------PDDILLTVDAMTGQDIVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             FH     TGL++TK+DG +RGGG++ +    ++PV F+G+GE I+DL+ F     +  
Sbjct: 235 SSFHEQLDVTGLVLTKLDGDSRGGGILSVRSITQVPVKFVGLGEKIDDLDVFHPDRMADR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|294339325|emb|CAZ87681.1| Cell division protein ftsY homolog [Thiomonas sp. 3As]
          Length = 369

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 117/307 (38%), Positives = 177/307 (57%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
              +  W  +L  G   T      GI+ +    ++D+ + EELE  LI +D G+     +
Sbjct: 67  EQPTSGWFSRLRSGLRKT----GSGISGLFGGSKIDEALYEELESALIMADAGMPATTAL 122

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + +L  +  +        +   +++ +  +L PL KP +      P V+++VGVNG GKT
Sbjct: 123 LADLRRRVKSTRAETPAQVRGLLADALADLLSPLQKPLDIG-RQNPTVLMMVGVNGAGKT 181

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL++ +  A  KV+LAAGDTFR+AA +QL  W  R     + S+ G D AA+A++A
Sbjct: 182 TTIGKLTQHLLRADEKVLLAAGDTFRAAAREQLVAWGQRNQVQVI-SQDGGDPAAVAFDA 240

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
               +A+++DV+I+DTAGRL     LM  + K+ RV  +    APH +L V+DA  GQNA
Sbjct: 241 VSAGKAREIDVVIVDTAGRLPTQLHLMEELKKVKRVTAKAMDGAPHEILLVIDANNGQNA 300

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV  F    G TGL++TK+DG+A+GG +  I     +PVYF+GVGE ++DL+ F AK 
Sbjct: 301 LAQVRAFDDALGLTGLVITKLDGSAKGGVIAAIARERPVPVYFIGVGESLDDLQTFDAKA 360

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 361 FARALVG 367


>gi|222615533|gb|EEE51665.1| hypothetical protein OsJ_33001 [Oryza sativa Japonica Group]
          Length = 550

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 152/311 (48%), Gaps = 15/311 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KL+    D+++   + + +R+ +   L+ +D+ + V ++ V  
Sbjct: 68  RAEMFGQLTTGLESAWNKLRGV--DVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVSS 124

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  K    D+       Q+++  V + + K++        +  S  P VIL+ G+ GVGK
Sbjct: 125 ISEKALGSDLIRGVRPEQQLVKIVHDELVKLMGGEVSDLVFAKSG-PTVILLAGLQGVGK 183

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TTV  KL+  +   G   ML A D +R AAIDQL I  ++           +  A +   
Sbjct: 184 TTVCAKLAFYLKKLGKSCMLVAADVYRPAAIDQLTILGEQVGVPVYSEGTEAKPAQITKN 243

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A ++A+ K +D +++DTAGRL  +  +M  + ++ + +       P  VL V+DA TGQ 
Sbjct: 244 AVEEAKRKNIDAIVMDTAGRLQIDKSMMVELKEVKKAVN------PTEVLLVVDAMTGQE 297

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + +      P+ F+G GE + DLE F   
Sbjct: 298 AAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERMEDLELFYPD 357

Query: 305 DFSAVITGCLD 315
             +  + G  D
Sbjct: 358 RMAQRVLGMGD 368


>gi|330818359|ref|YP_004362064.1| Signal recognition particle-docking protein FtsY [Burkholderia
           gladioli BSR3]
 gi|327370752|gb|AEA62108.1| Signal recognition particle-docking protein FtsY [Burkholderia
           gladioli BSR3]
          Length = 392

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 124/304 (40%), Positives = 181/304 (59%), Gaps = 7/304 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SWI +L  G      K    +T +  S ++D+ + EELE  L+ SD GV   + ++  
Sbjct: 95  KKSWIARLRSG----LSKTSSSLTSVFVSTKIDEDLYEELETALLMSDAGVDATEYLLGA 150

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K  A+ ++  + +   +  L+  +L PL K      +  P V+++ GVNG GKTT I
Sbjct: 151 LREKVKAERLTDPQQVKAALRGLLIALLAPLEKSLMLGRAQ-PLVMMIAGVNGAGKTTSI 209

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K +      V+LAAGDTFR+AA +QL IW +R +   V  +   D AA+ ++A   
Sbjct: 210 GKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVV-QQESGDPAAVIFDAVGA 268

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+K++V++ DTAGRL     LM  + K+ RV+ +    APH VL V+DA TGQNAL Q
Sbjct: 269 ARARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAQADAPHEVLLVIDANTGQNALAQ 328

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DL+PF A++F+ 
Sbjct: 329 VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAEEFTD 388

Query: 309 VITG 312
            + G
Sbjct: 389 ALLG 392


>gi|46579253|ref|YP_010061.1| signal recognition particle protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448667|gb|AAS95320.1| signal recognition particle protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233082|gb|ADP85936.1| signal recognition particle protein [Desulfovibrio vulgaris RCH1]
          Length = 508

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 143/305 (46%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L +         +LD+        E+   L+ +D+   V +  ++ +  +   
Sbjct: 2   FDSLSDRLTQAFRKFSGQSQLDENNIQEGLREVRLALLEADVNFKVVKDFIDRVKERCLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V + + ++L   +   +   +  P VI++VG+ G GKTT   K+
Sbjct: 62  QDVLKSLTPAQQVVKVVHDELVELLGGGTTELDLRGAQ-PGVIMMVGLQGSGKTTSSAKI 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +    ++  L   D +R AAIDQL   A +    +  S        +   A   A+ 
Sbjct: 121 ANLLRKRKMRPYLVPVDVYRPAAIDQLVTLARQLDIPYYQSTPDMKPLDIVRAALADAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K+   +++DTAGRLH +  LM  +  +          AP  +L V DA TGQ+A+   + 
Sbjct: 181 KQCTAVLLDTAGRLHVDEALMDELAALKATF------APQEILFVADAMTGQDAVTVADA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+++TKMDG ARGG  + I       V ++G+GE ++D+E F     +  I 
Sbjct: 235 FNEKLGITGVVLTKMDGDARGGAALSIKSVTGASVKYVGIGEKLSDIEVFHPDRVAGRIL 294

Query: 312 GCLDY 316
           G  D 
Sbjct: 295 GMGDM 299


>gi|38234110|ref|NP_939877.1| signal recognition particle protein [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200372|emb|CAE50059.1| signal recognition particle protein [Corynebacterium diphtheriae]
          Length = 538

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 146/319 (45%), Gaps = 30/319 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ + S  ++ +     V  E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLGNALSGLRSKGKVTEADINTVAREIRLALLEADVSLPVVRGFISRIKDRALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      ++V+  V E +  +L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSKALNPAEQVIKIVDEELTGILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           +K + + G   ML A D  R  A+ QL I  +R        +                 D
Sbjct: 121 AKHLVEQGHTPMLVACDLQRPGAVQQLTIVGERAGVPTFAPDPGTSIDSSDHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+A +   +A+  + D++I+DTAGRL  +  LM     +   +       P  VL V+
Sbjct: 181 PVAVAQQGIAEAKRTQHDIVIVDTAGRLGIDEALMTQARNIRDAIN------PDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F      TG+++TK+DG ARGG  + I      P+ F   GE + D
Sbjct: 235 DAMIGQDAVNTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLDY 316
            + F  +  S+ I G  D 
Sbjct: 295 FDIFHPERMSSRILGMGDM 313


>gi|227833413|ref|YP_002835120.1| signal recognition particle protein [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184401|ref|ZP_06043822.1| signal recognition particle protein [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454429|gb|ACP33182.1| signal recognition particle protein [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 531

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 89/319 (27%), Positives = 150/319 (47%), Gaps = 30/319 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+  ++ +    +L +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FESLSDRLQSALSGLRGKGKLTEADINATAREIRLALLEADVSLNVVRGFIKRIKERAAG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPAQQVVKIVNEELIEILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           SK ++  G   ML A D  R  A+ QL+I  +R   D    +                 D
Sbjct: 121 SKHLAAKGHTPMLVACDLQRPGAVQQLQIVGERAGVDVYAPDPGTSLDSHEHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A+  + D++IIDTAGRL  +  LM     +       D   P  VL V+
Sbjct: 181 PVDVAKRGIEEAKRTQHDIVIIDTAGRLGIDETLMTQARNI------RDAVNPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+A++  E F      TG+++TK+DG ARGG  + I      P+ F   GE + D
Sbjct: 235 DSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLDY 316
            + F  +  S+ I G  D 
Sbjct: 295 FDVFHPERMSSRILGMGDL 313


>gi|262277881|ref|ZP_06055674.1| signal recognition particle-docking protein FtsY [alpha
           proteobacterium HIMB114]
 gi|262224984|gb|EEY75443.1| signal recognition particle-docking protein FtsY [alpha
           proteobacterium HIMB114]
          Length = 305

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 126/302 (41%), Positives = 196/302 (64%), Gaps = 2/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   +K+++G   TS     GI DI    +  + + ++L D +I SDIG+ + +KI++ +
Sbjct: 1   MQIFKKISEGLKKTSKNFGNGINDIFKKSKPSNEILQDLGDFMISSDIGLPLTEKIIQNI 60

Query: 71  LTKRYA-KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K+++ ++++ +  L  ++  + ++L P+ +   ++ S+    ILV GVNG GKTT IG
Sbjct: 61  KNKKFSDEELNQKNFLEILTNEMLEILEPVEENI-FNKSNGLKTILVCGVNGTGKTTTIG 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL K + D   KV++ A DTFR+AAI+QL  W  + S D   S+ G+D AA+A++  ++A
Sbjct: 120 KLCKILKDNNSKVIVGAADTFRAAAIEQLDNWCQKNSIDIEKSDPGADPAAVAFKTLEKA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D  IIDTAGRLHN   LM    K+IRV+K++D +AP   + VLDATTGQNAL Q+
Sbjct: 180 KLNNYDYCIIDTAGRLHNKKNLMDEFSKIIRVMKKIDENAPEKTIIVLDATTGQNALNQI 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+ ++  +GLIMTK+DGTA+GG L+ I   +K+P+Y +GVGE ++DL+PFVAKDF   
Sbjct: 240 EEFNKISKLSGLIMTKLDGTAKGGVLLSITEKYKLPIYAIGVGEQVDDLQPFVAKDFVKA 299

Query: 310 IT 311
             
Sbjct: 300 FL 301


>gi|329962381|ref|ZP_08300385.1| signal recognition particle protein [Bacteroides fluxus YIT 12057]
 gi|328530104|gb|EGF56989.1| signal recognition particle protein [Bacteroides fluxus YIT 12057]
          Length = 440

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 151/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    R+ +       +++   L+ +D+   VA+   + + TK   
Sbjct: 2   FDNLSERLERSFKILKGEGRITEINVAETLKDVRKALLDADVNYKVAKNFTDTVKTKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +   N D   +P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGETAEINID--SKPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++ A++            D   +A  A  +A+
Sbjct: 120 ARMLKSKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYSEPDSKDPVRIAQNAILEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  + + +       P+ +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDLVIVDTAGRLAVDEEMMNEIAAIKKAIN------PNEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|284928857|ref|YP_003421379.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [cyanobacterium UCYN-A]
 gi|284809316|gb|ADB95021.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [cyanobacterium UCYN-A]
          Length = 494

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 140/308 (45%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT        KL+    +II+   + +   +E+   L+ +D+ + V +  + ++  
Sbjct: 1   MFDALTDRLEEAWKKLRGQ--NIITHANIQE-TLKEVRRALLEADVNLQVVKDFIADIEK 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
                 V       Q+ +  V E + K++   + P     S  P VIL+VG+ G GKTT 
Sbjct: 58  SAIGVKVIQGVNPGQQFIKVVYEELVKVMGESNSPLAKAESD-PTVILMVGLQGTGKTTA 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+  +       ++ A D +R AAIDQLK    +            +   +A +   
Sbjct: 117 TAKLAHYLKKQKQSCLMVAADIYRPAAIDQLKTLGQQIEVPVFELGNQENPVNIALQGVN 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+  + DV+IIDTAGRL  +  +M  + ++   +       PH  L V+DA TGQ A  
Sbjct: 177 KAKEIEADVVIIDTAGRLQIDQGMMLELTQIKESIN------PHDTLLVVDAMTGQEAAN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + FH     TG I+TKMDG  RGG  + +      P+ F+GVGE I  L+PF     +
Sbjct: 231 LAQTFHEKIKITGTILTKMDGDTRGGAALSVRKVSGQPIKFVGVGEKIEALQPFYPDRMA 290

Query: 308 AVITGCLD 315
           + I    D
Sbjct: 291 SRILNMGD 298


>gi|15598941|ref|NP_252435.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           PAO1]
 gi|107103261|ref|ZP_01367179.1| hypothetical protein PaerPA_01004330 [Pseudomonas aeruginosa PACS2]
 gi|116051744|ref|YP_789417.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889976|ref|YP_002438840.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           LESB58]
 gi|254236655|ref|ZP_04929978.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           C3719]
 gi|254242437|ref|ZP_04935759.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           2192]
 gi|296387745|ref|ZP_06877220.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           PAb1]
 gi|313109153|ref|ZP_07795124.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           39016]
 gi|9949914|gb|AAG07133.1|AE004793_10 signal recognition particle protein Ffh [Pseudomonas aeruginosa
           PAO1]
 gi|115586965|gb|ABJ12980.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168586|gb|EAZ54097.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           C3719]
 gi|126195815|gb|EAZ59878.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           2192]
 gi|218770199|emb|CAW25961.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           LESB58]
 gi|310881626|gb|EFQ40220.1| signal recognition particle protein Ffh [Pseudomonas aeruginosa
           39016]
          Length = 457

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L +        E+   L+ +D+ + V +  V ++  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNKVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   + +++   ++      +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSKSLTPGQAFVKIVRAELEELMGAANEDLALSVA-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++  + D +R AAI QL+  A      F  S++     A+A  A ++A+
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLETLAGEVGVTFFPSDVSQKPVAIAEAAIREAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DV+I+DTAGRLH ++ +M  I ++   +K          L V+DA TGQ+A    +
Sbjct: 181 LKFIDVVIVDTAGRLHIDADMMDEIKQVHAAIKPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + +      P+ FLG+GE    L+PF     ++ I
Sbjct: 235 AFNDALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFLGMGEKSEALDPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|297626601|ref|YP_003688364.1| GTP binding signal recognition particle protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922366|emb|CBL56938.1| GTP binding signal recognition particle protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 523

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 147/308 (47%), Gaps = 18/308 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L +    +    RL D   +    E+   L+ +D+ + V ++ V ++  + + 
Sbjct: 2   FDTLQSRLADTFKSLRGKGRLTDADIDATTREIRIALLEADVALPVVKEFVAKVKERAHG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++S      Q+++  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  LELSKALNPTQQIVKIVNEELIDILGGRTREIRFSKGTDPTVIMLAGLQGAGKTTLAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              + + G   +L A D  R  A+ QL++  +R        + G+   D   ++ E+  +
Sbjct: 122 GHWLREQGHSPVLVAADLQRPNAVQQLQVIGERAGVPVFAPQPGNGVGDPVQVSRESLDE 181

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+I+DTAGRL  +  +MA    +   +       P+  L V+DA  GQ+A+  
Sbjct: 182 ARHKLYDVIIVDTAGRLGVDEEMMAQAHDIKAAVT------PNETLFVVDAMIGQDAVNT 235

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G  G++++K+DG ARGG  + I      P+ F   GE + D + F     ++
Sbjct: 236 AKAFEQGVGIDGVVLSKLDGDARGGAALSIARVIGKPIMFASNGENLTDFDLFHPDRMAS 295

Query: 309 VITGCLDY 316
            I G  D 
Sbjct: 296 RILGMGDM 303


>gi|212712913|ref|ZP_03321041.1| hypothetical protein PROVALCAL_04010 [Providencia alcalifaciens DSM
           30120]
 gi|212684458|gb|EEB43986.1| hypothetical protein PROVALCAL_04010 [Providencia alcalifaciens DSM
           30120]
          Length = 453

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL D        E+   L+ +D+ + V ++ ++++      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVREFIQKVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV+      Q  +  V   + + +   +   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  QDVNKSLTPGQEFIKIVQNELTRAMGEENHQLNLS-AQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K +L  + D +R AAI QL+  A+    DF  SE+    AA+  +A K AQ
Sbjct: 121 GKLLKEKQKKKVLVVSADVYRPAAIKQLETLAEAVGVDFFPSEVQEKPAAIVQKALKHAQ 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGRLH +  +M  I ++ R++       P   L V+DA TGQ+A    +
Sbjct: 181 LQFYDVLLVDTAGRLHVDEAMMEEIQEVHRIIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF  +  ++ I
Sbjct: 235 AFNEALPLTGIVLTKVDGDARGGAALSIRAITGKPIKFLGVGEKTDALEPFHPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|300867755|ref|ZP_07112400.1| signal recognition particle subunit FFH/SRP54 (srp54) [Oscillatoria
           sp. PCC 6506]
 gi|300334338|emb|CBN57572.1| signal recognition particle subunit FFH/SRP54 (srp54) [Oscillatoria
           sp. PCC 6506]
          Length = 483

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L+     +    ++ D        E+   L+ +D+ + V +  + E+  K   
Sbjct: 2   FDALADRLESAWKKLRGQDKISDANIQEALREVRRALLEADVNLQVVKDFIAEVAVKAQG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + +++   + P        P ++L+ G+ G GKTT   KL
Sbjct: 62  AEVISGVRPDQQFIKIVYDELVRVMGETNSPLAI-ADSAPTIVLMAGLQGTGKTTASAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++       +L A D +R AAIDQL     +           +D   +A +   +A+ 
Sbjct: 121 ALQLRKQNRSTLLVATDIYRPAAIDQLITLGKQIDVPVFELGKDTDPVEIARQGIDRARE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VD +I+DTAGRL  +  +MA + ++   ++      PH  L V+DA TGQ A      
Sbjct: 181 LGVDTVIVDTAGRLQIDQDMMAELARIKETIQ------PHETLLVVDAMTGQEAANLTRT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TKMDG +RGG  + +      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FHDQIGITGAILTKMDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|329122028|ref|ZP_08250637.1| cell division protein FtsY [Dialister micraerophilus DSM 19965]
 gi|327467080|gb|EGF12592.1| cell division protein FtsY [Dialister micraerophilus DSM 19965]
          Length = 313

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 122/302 (40%), Positives = 189/302 (62%), Gaps = 3/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S+  ++ KG   T   L + I  I I    +D+   ++LE +L+  D+GV     ++ +
Sbjct: 1   MSFFDRIKKGLEKTKKGLIQNIESIVIGYAHIDEEFLDDLEMILVSGDLGVRTTDYLMRQ 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +       ++S    +    E    M+  L++    + +H P V L+VGVNGVGKTT IG
Sbjct: 61  IRRGVKEGNISNTSEVMPFIE--KTMIELLTENDEKEENHVPEVYLIVGVNGVGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +MS AG KV+LAAGDT+R+AA +QL IWA+RT +D V    G+D AA+A++A   A
Sbjct: 119 KLAYQMSKAGKKVLLAAGDTYRAAASEQLTIWAERTGSDIVKHAEGADPAAVAFDALTAA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DV+++DTAGR+   + LM  +GK+ +V+K++ P APH  L VLDATTGQNA+ Q 
Sbjct: 179 KARNIDVVLVDTAGRIQTKTNLMNELGKINKVMKKVIPDAPHQTLLVLDATTGQNAVSQA 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  V   TG+++TK+DGTA+GG ++ I    K+PV ++G+GE  +DL+ F A  F   
Sbjct: 239 KHFKEVVDITGIVLTKLDGTAKGGVVLSIHEELKVPVKWIGLGEREDDLQKFDASVFVKA 298

Query: 310 IT 311
           + 
Sbjct: 299 LF 300


>gi|284053369|ref|ZP_06383579.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrospira
           platensis str. Paraca]
          Length = 441

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +E+   L+ +D+ + V +  ++E+  +   
Sbjct: 2   FDALSERLESAWKKLRGQDKITESNIQEALKEVRRALLEADVNLMVVKDFIKEVGVQAQG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+ +  V + + K++   + P   +    P ++L+ G+ G GKTT   KL
Sbjct: 62  SQVVSGVKPGQQFIKIVHDELVKVMGESNVPL-AEAQQPPTIVLMAGLQGTGKTTASAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       +L A D +R AAIDQL     + +         +D   +A +  +  +A
Sbjct: 121 ALHLQKENRSSLLVATDVYRPAAIDQLMTLGKQINVPVFELGKDADPVEIARQGIEYGKA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D +IIDTAGRL  +  +MA + ++   ++      PH  L V+DA TGQ A    + 
Sbjct: 181 QGIDTIIIDTAGRLQIDQNMMAELAQIKETVQ------PHETLLVVDAMTGQEAATLTQT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I+TKMDG +RGG  + I      P+ F+GVGE +  L+PF  +  ++ I 
Sbjct: 235 FNDRIGITGAILTKMDGDSRGGAALSIRRVSGAPIKFVGVGEKVEALQPFYPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|49483400|ref|YP_040624.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|258423922|ref|ZP_05686807.1| signal recognition particle protein [Staphylococcus aureus A9635]
 gi|282903791|ref|ZP_06311679.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905555|ref|ZP_06313410.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908530|ref|ZP_06316360.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910809|ref|ZP_06318612.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282916487|ref|ZP_06324249.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus D139]
 gi|282918935|ref|ZP_06326670.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus C427]
 gi|283770299|ref|ZP_06343191.1| signal recognition particle subunit SRP54 [Staphylococcus aureus
           subsp. aureus H19]
 gi|283957979|ref|ZP_06375430.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295427723|ref|ZP_06820355.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591318|ref|ZP_06949956.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49241529|emb|CAG40215.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257845951|gb|EEV69980.1| signal recognition particle protein [Staphylococcus aureus A9635]
 gi|282316745|gb|EFB47119.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus C427]
 gi|282319927|gb|EFB50275.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus D139]
 gi|282325414|gb|EFB55723.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327592|gb|EFB57875.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330847|gb|EFB60361.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595409|gb|EFC00373.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|283460446|gb|EFC07536.1| signal recognition particle subunit SRP54 [Staphylococcus aureus
           subsp. aureus H19]
 gi|283470450|emb|CAQ49661.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283790128|gb|EFC28945.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295128081|gb|EFG57715.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576204|gb|EFH94920.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MN8]
 gi|298694530|gb|ADI97752.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ED133]
 gi|302332841|gb|ADL23034.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|312438385|gb|ADQ77456.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315194125|gb|EFU24518.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|323441012|gb|EGA98719.1| signal recognition particle protein [Staphylococcus aureus O11]
 gi|323442329|gb|EGA99959.1| signal recognition particle protein [Staphylococcus aureus O46]
          Length = 455

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    +L +     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + K++   +   N   +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS-NKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML A D +R AAI+QL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P+ ++ V+D+ TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK------PNEIMLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 ESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|310815518|ref|YP_003963482.1| signal recognition particle-docking protein FtsY
           [Ketogulonicigenium vulgare Y25]
 gi|308754253|gb|ADO42182.1| signal recognition particle-docking protein FtsY
           [Ketogulonicigenium vulgare Y25]
          Length = 317

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 124/314 (39%), Positives = 201/314 (64%), Gaps = 12/314 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-----------SRRLDDGVREELEDLLIRSDIG 59
           +S   KL      +S +L  GI  I++            R +DD + EELE+LLI +D+G
Sbjct: 1   MSLFSKLKDRLFKSSTRLDAGIEGIVADAPAASAADEARRTVDDAMLEELEELLITADMG 60

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           V  A ++   +    + + ++ + +   ++  + +++ P+++P    +  +P V+LVVGV
Sbjct: 61  VETATRVTANIGDALHGRRLTTREIKEALAREVGRIMEPVARPLPI-YPKKPQVVLVVGV 119

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+ +   AG +V++AAGDTFR+AA++QL++W +R     + +  GSD A
Sbjct: 120 NGSGKTTTIGKLASQFKAAGKQVVVAAGDTFRAAAVEQLQVWGERAGVPVLTAPEGSDPA 179

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           +LA++A  +A+    D+L+IDTAGRL N   LM  + K++RV+++ DP APH+ L VLDA
Sbjct: 180 SLAFDAMTRAEEIGADLLLIDTAGRLQNRQDLMEELAKIVRVIRKKDPSAPHNTLLVLDA 239

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ QV++F  +A  +GL+MTK+DGTARGG L+ +     +P++ +G+GE I+DL 
Sbjct: 240 TTGQNAVMQVDIFRKIADVSGLVMTKLDGTARGGVLVALADKFGLPIHAIGLGEQIDDLA 299

Query: 300 PFVAKDFSAVITGC 313
           PF  ++F+  + G 
Sbjct: 300 PFDPQEFARALCGL 313


>gi|289550983|ref|YP_003471887.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658478|ref|ZP_07911350.1| signal recognition particle protein [Staphylococcus lugdunensis
           M23590]
 gi|289180515|gb|ADC87760.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496807|gb|EFU85130.1| signal recognition particle protein [Staphylococcus lugdunensis
           M23590]
          Length = 455

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    ++ +     +  E+   L+ +D+   V ++ +  +  +  
Sbjct: 2   AFEGLSERLQATMQKMRGKGKVTEADIKTMMREVRLALLEADVNFKVVKQFINTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + +++   +       +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQDELTQLMGGENTTIKM-ANKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML AGD +R AAIDQL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQLDVPVYSEGDQVKPQQIVENALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P  V+ V+DA TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELQEVKAISK------PDEVMLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 QSFDEQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKMDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|148655435|ref|YP_001275640.1| signal recognition particle protein [Roseiflexus sp. RS-1]
 gi|148567545|gb|ABQ89690.1| signal recognition particle subunit FFH/SRP54 (srp54) [Roseiflexus
           sp. RS-1]
          Length = 444

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 149/306 (48%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+     +    +L +D VRE ++     L+ +D+ + V +  V  +  K   
Sbjct: 2   FESLSDRLQAVFQKLGGKGKLTEDDVREAMKQVRIALLEADVNLKVVRDFVARVTEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V      VQ+V+  V + +  +L   + P   +    P VI+++G+ G GKTT   KL
Sbjct: 62  EEVAKSLTPVQQVIKIVHQELIDLLGQANVPL-AEARPGPTVIMLIGLQGSGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L A D +R AAI QL+    +                +A  A ++A+ 
Sbjct: 121 ALWLRKKGKRPLLVAADIYRPAAITQLESLGRQLGIPVHAEGTQVSPPEIARHALRRARD 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +  +IIDTAGRL  +  LMA + ++   +       P   L V+DA  GQ A+R  E 
Sbjct: 181 ENLTHVIIDTAGRLQIDEPLMAELEQINAAVD------PVERLLVVDAMIGQEAVRVAEE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND--LEPFVAKDFSAV 309
           F+   G TG+I TK+DG ARGG  + +     +P+ FLG GE +    +EPF     ++ 
Sbjct: 235 FNRRVGLTGVIFTKVDGDARGGAALSVRAVTGVPIKFLGSGEKVEASTIEPFHPDRLASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|319938302|ref|ZP_08012699.1| signal recognition particle GTPase [Coprobacillus sp. 29_1]
 gi|319806595|gb|EFW03253.1| signal recognition particle GTPase [Coprobacillus sp. 29_1]
          Length = 457

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 148/306 (48%), Gaps = 18/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L++ +  I     L     D +  E+   L+ +D+   V ++ +     K  
Sbjct: 2   AFESLSERLQDSLKKIKGQATLTEANMDEMLREIRLALLEADVNFQVVKEFIANTKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V + + ++L         DFS +P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVLGSLKPGQVVVKVVHDELVELLGTSVSEL--DFSRKPTVIMMVGLQGSGKTTTSGK 119

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++K ++     K +L A D +R AA+DQLK    + +           A  +  +A    
Sbjct: 120 IAKLITKKYAKKPLLVAADIYRPAAVDQLKTLGQQLNVPVFEKGTDISAEDIVKQAMAYG 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q  + DV+I+DTAGRLH +  LM  +  +  +        P  +L V+DA TGQ+ +   
Sbjct: 180 QENQHDVIIVDTAGRLHIDEPLMQELQNIKEITN------PSEILLVVDALTGQDIVNVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG ++TK+DG +RGGG + +     +P+ F+G GE ++ ++ F     +  
Sbjct: 234 QSFNEHLSITGAVLTKLDGDSRGGGALSVRHITHVPIKFVGTGEKLDAIDLFYPDRMADR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|187477074|ref|YP_785098.1| cell division protein [Bordetella avium 197N]
 gi|115421660|emb|CAJ48170.1| cell division protein [Bordetella avium 197N]
          Length = 336

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 118/308 (38%), Positives = 180/308 (58%), Gaps = 11/308 (3%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           +  SW+ +L +G A T     + I  I    ++D+ + EELE  LI +D G+    K++ 
Sbjct: 33  KKASWLSRLKQGLART----GQSIGGIFVGVKVDENLFEELESALIMADAGIEATDKLLT 88

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +   + +     +   + +L+   L PL + F+   +  P V+++ GVNG GKTT 
Sbjct: 89  ALRARVKKERIEDPAQVKAALRQLLADHLKPLERQFDLKRAQ-PLVVMIAGVNGAGKTTS 147

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+      G  V+LAAGDTFR+AA +QL  W  R +   +  + G D AA+A++A  
Sbjct: 148 IGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVIAQD-GGDPAAVAFDAVN 206

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A+   V++IDTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL 
Sbjct: 207 AGRARAAGVVMIDTAGRLPTQLHLMEELKKIRRVIGKADAAAPHEVLLVIDGNTGQNALA 266

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVA 303
           Q+  F A    TGL++TK+DGTA+GG L  +    +    +PVY++GVGEG+ DL+PFVA
Sbjct: 267 QIRAFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGLEDLQPFVA 326

Query: 304 KDFSAVIT 311
           ++F++ + 
Sbjct: 327 EEFASALL 334


>gi|262196884|ref|YP_003268093.1| signal recognition particle-docking protein FtsY [Haliangium
           ochraceum DSM 14365]
 gi|262080231|gb|ACY16200.1| signal recognition particle-docking protein FtsY [Haliangium
           ochraceum DSM 14365]
          Length = 377

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 110/304 (36%), Positives = 175/304 (57%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            +L  G A T       +  + + +++D  V +ELE +L  +DIG   A  + + +  + 
Sbjct: 72  ERLRDGLARTRGGFVARLGKLFARKQIDADVLDELEQVLFTADIGPKTADTLFQSIKARL 131

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             +++     ++         ++ +  P      H+P V+L +GVNGVGKTT IGKL+ K
Sbjct: 132 SKQELDDPEAVWSEIRERSLAILDVDTPPLTFSEHKPFVLLTIGVNGVGKTTTIGKLAAK 191

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           +   G +V+L AGDTFR+AA++QL+IW +R  A  V  + G D +++ ++  K+   +K 
Sbjct: 192 LGAEGKRVLLGAGDTFRAAAVEQLQIWGERADAPVVTGKSGGDPSSVLFDTIKRGVDEKF 251

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+I DTAGRLH    LM  + K+ RV ++  P APH    VLDATTGQNA++Q +MF  
Sbjct: 252 DVVICDTAGRLHTKVDLMDELKKVGRVCEKAMPGAPHETWLVLDATTGQNAIQQAQMFKQ 311

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
               TG+++TK+DGTA+GG ++ I     +PV ++G+GE ++DL  F A+ F   +    
Sbjct: 312 AMNITGIVLTKLDGTAKGGVILGICHELAVPVRYIGIGESVSDLREFDARAFVDALYANT 371

Query: 315 DYGE 318
           D  E
Sbjct: 372 DAAE 375


>gi|332877610|ref|ZP_08445354.1| signal recognition particle protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332684459|gb|EGJ57312.1| signal recognition particle protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 442

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 148/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL++ + ++    ++ +       +E+   L+ +D+   +A+     +  K   
Sbjct: 2   FDNLSDKLEKALHNLKGHGKITEINVAETLKEVRRALLDADVNYKIAKDFTNTVKEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V + + +++   +   N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QQVLTTLQPGQLMVKIVKDELTQLMGGDAAGVNL--SGNPTVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAIDQL I  ++        +  ++   +A +    A+
Sbjct: 120 ANYLKTKKNKKPLLVACDVYRPAAIDQLHIVGEQVGVPVFSDKGNNNPVDIALKGLAYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++V+I+DTAGRL  +  +M  I  + + +K      PH  L V+DA TGQ+A+   +
Sbjct: 180 ENHLNVVIVDTAGRLAVDEQMMNEISNIHQAIK------PHETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V    G+I+TK+DG  RGG  I I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 AFNDVLNFDGVILTKLDGDTRGGAAITIKSVVNKPIKFVGTGEKMDAIDVFYPDRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|228474956|ref|ZP_04059684.1| signal recognition particle protein [Staphylococcus hominis SK119]
 gi|314936601|ref|ZP_07843948.1| signal recognition particle protein [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270941|gb|EEK12329.1| signal recognition particle protein [Staphylococcus hominis SK119]
 gi|313655220|gb|EFS18965.1| signal recognition particle protein [Staphylococcus hominis subsp.
           hominis C80]
          Length = 456

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLSDRLQATMQKIRGKGKVTEADIKTMMREVRLALLEADVNFKVVKDFVKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + +++   +       +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQDELTQLMGGENTSIKM-ANKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML A D +R AAI+QL+    +                +   A + A
Sbjct: 121 LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQLDVPVYSEGDQVKPQQIVDNALRYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  +  +  + K      P  ++ V+DA TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDETLMNELADVKEISK------PDEIMLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+ +TK+DG  RGG  + I      P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 QSFDEQLDVTGVTLTKLDGDTRGGAALSIRAVTHKPIKFVGMSEKMDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|160903149|ref|YP_001568730.1| signal recognition particle-docking protein FtsY [Petrotoga mobilis
           SJ95]
 gi|160360793|gb|ABX32407.1| signal recognition particle-docking protein FtsY [Petrotoga mobilis
           SJ95]
          Length = 304

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 124/302 (41%), Positives = 180/302 (59%), Gaps = 3/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +    K   G +     + + I  I S + LDD V EELE++LI SD+GV V+ KI+EEL
Sbjct: 1   MGIFEKFKNGLSKARNTVFKNIKTIFSGKVLDDDVLEELEEILIMSDMGVEVSHKILEEL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++  + + S    L  + +++ + L         DF  +P+VIL+VGVNG GKTT   K
Sbjct: 61  KSRYKSNN-SHNDPLLLLRDILVENLQK--DEVVSDFQQKPYVILIVGVNGSGKTTTAAK 117

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K  S  G +V+LAA DTFR+AAI+QLK W +R +   +  + GSDAAA+ Y+A   A+
Sbjct: 118 LAKMYSKQGKEVVLAAADTFRAAAIEQLKEWGNRLNTTVIAHQKGSDAAAVVYDAITHAK 177

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  DV+++DTAGRLH  S LM  + K+ RV++R  P APH  L VLD TTGQN + Q +
Sbjct: 178 SRGKDVVLVDTAGRLHTKSNLMDELKKIRRVVEREVPGAPHETLLVLDGTTGQNGISQAK 237

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DGTA+GG    I     IP+  +G GE  +DL+ F    +   +
Sbjct: 238 AFKEAIDITGIVVTKLDGTAKGGIAFAINHELNIPIKLVGFGEKEDDLQIFDPVSYCNAL 297

Query: 311 TG 312
            G
Sbjct: 298 LG 299


>gi|319779087|ref|YP_004130000.1| Signal recognition particle, subunit Ffh SRP54 [Taylorella
           equigenitalis MCE9]
 gi|317109111|gb|ADU91857.1| Signal recognition particle, subunit Ffh SRP54 [Taylorella
           equigenitalis MCE9]
          Length = 471

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 96/318 (30%), Positives = 151/318 (47%), Gaps = 29/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +    RL +     +  E+   LI +D+ + V +  +EE+ +K   
Sbjct: 2   FDNLSNRLARVMQTMRGEARLTEQNTKDMLREIRMALIEADVALPVVKAFIEEVKSKAMG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           +DV+      Q ++  V + +  ++           S     P VIL+ G+ G GKTT  
Sbjct: 62  QDVATSLNPGQALVGIVHKELTALMGGDLGEQASQLSFASQPPAVILMAGLQGAGKTTTT 121

Query: 129 GKLSKK-----------MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GKLS+                  KV++ + D +R AAIDQLK  A + S DF  S     
Sbjct: 122 GKLSRLISKGLLPSGNLKKHPPKKVLVVSADVYRPAAIDQLKSVAQQASVDFFASSPDQK 181

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A  A   A+ +  DVLI+DTAGRL  ++ +M  I ++ + L       P   L V+
Sbjct: 182 PIEIARAALDHAKRQFYDVLIVDTAGRLGIDTAMMNEIRELHQFLN------PVETLFVV 235

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   + F      TG+++TKMDG ARGG  + +      P+ F+GV E ++ 
Sbjct: 236 DAMQGQDAVNVAKAFAEALPLTGVVLTKMDGDARGGAALSVRHVTGKPLKFIGVSEKLDG 295

Query: 298 LEPFVAKDFSAVITGCLD 315
           LEPF  +  +  I G  D
Sbjct: 296 LEPFHPERMAQRILGMGD 313


>gi|21282849|ref|NP_645937.1| hypothetical protein MW1120 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486076|ref|YP_043297.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57651806|ref|YP_186112.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161356|ref|YP_493827.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194944|ref|YP_499744.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221359|ref|YP_001332181.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|221142027|ref|ZP_03566520.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253733525|ref|ZP_04867690.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|258452535|ref|ZP_05700541.1| signal recognition particle protein [Staphylococcus aureus A5948]
 gi|262048135|ref|ZP_06021022.1| hypothetical protein SAD30_1911 [Staphylococcus aureus D30]
 gi|262051866|ref|ZP_06024082.1| hypothetical protein SA930_1416 [Staphylococcus aureus 930918-3]
 gi|284024161|ref|ZP_06378559.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848231|ref|ZP_06788978.1| signal recognition particle protein [Staphylococcus aureus A9754]
 gi|297208119|ref|ZP_06924550.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300912199|ref|ZP_07129642.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381199|ref|ZP_07363852.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|21204288|dbj|BAB94985.1| ffh [Staphylococcus aureus subsp. aureus MW2]
 gi|49244519|emb|CAG42948.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285992|gb|AAW38086.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127330|gb|ABD21844.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202502|gb|ABD30312.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374159|dbj|BAF67419.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|253728579|gb|EES97308.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257859753|gb|EEV82595.1| signal recognition particle protein [Staphylococcus aureus A5948]
 gi|259160267|gb|EEW45295.1| hypothetical protein SA930_1416 [Staphylococcus aureus 930918-3]
 gi|259163701|gb|EEW48256.1| hypothetical protein SAD30_1911 [Staphylococcus aureus D30]
 gi|269940729|emb|CBI49110.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|294825031|gb|EFG41453.1| signal recognition particle protein [Staphylococcus aureus A9754]
 gi|296887362|gb|EFH26264.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300886445|gb|EFK81647.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302751060|gb|ADL65237.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340182|gb|EFM06123.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315198476|gb|EFU28805.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140947|gb|EFW32794.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144338|gb|EFW36104.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329313906|gb|AEB88319.1| Signal recognition particle protein [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329724762|gb|EGG61267.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733573|gb|EGG69901.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 455

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    +L +     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + +++   +   N   +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMS-NKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML A D +R AAI+QL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P+ ++ V+D+ TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK------PNEIMLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 ESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|257784652|ref|YP_003179869.1| signal recognition particle protein [Atopobium parvulum DSM 20469]
 gi|257473159|gb|ACV51278.1| signal recognition particle protein [Atopobium parvulum DSM 20469]
          Length = 459

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 137/304 (45%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L+   + +    RL +        E+   L+ +D+   V ++ V     +   
Sbjct: 2   FNSLQDRLQNTFSALRGKGRLTEDDINSAMREIRMALLEADVNYKVVKEFVGRCKEQCMT 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q V+  V + +  +L           +  P+VI++VG+ G GKTT   KL
Sbjct: 62  ADVLESLSPAQNVVRIVLDELTALLGSTESKLTLAQNRIPNVIMLVGLQGSGKTTAAAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +LAA D  R AA DQL+             +    A A+A EA ++A  
Sbjct: 122 AYLLKSQGKNPLLAACDVHRPAAADQLETLGSEIGVPVYRGDGKD-AVAIASEAIQEAVD 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRL  +  +M     + R +K      P  +L V+DA TGQ+ +  V  
Sbjct: 181 HLNDLVIVDTAGRLQIDEEMMEEAVAIKRAVK------PDQILMVVDAMTGQDIVNVVST 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G+IM+K+DG ARGGG + +      P+ F+ +GE  + LE F     +  I 
Sbjct: 235 FAERVDFDGVIMSKLDGDARGGGALSVREVTGKPIKFVSMGEKPDSLEVFHPDRMAKRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|325108508|ref|YP_004269576.1| signal recognition particle-docking protein FtsY [Planctomyces
           brasiliensis DSM 5305]
 gi|324968776|gb|ADY59554.1| signal recognition particle-docking protein FtsY [Planctomyces
           brasiliensis DSM 5305]
          Length = 313

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 182/312 (58%), Gaps = 12/312 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    +L KG   T+  L   + D+  +  + +D    + E  LI SD+GVA + +IVEE
Sbjct: 1   MGLFDRLKKGLQKTAKVLNTDVRDLFRAGEILNDEHLAQFERRLIESDMGVAASMEIVEE 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----------PHVILVVGV 119
           L  K   + V V+ +   V   +H++L   ++   +D  +           P VILV GV
Sbjct: 61  LRKKHRGRTVVVEEIWATVQAKLHELL-QGNENVEYDTENPLAPLNMAEEGPTVILVAGV 119

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT I KL+  +  AG KV+LAAGDTFR+AA++QL +W+ R   D V  E GSD A
Sbjct: 120 NGVGKTTSIAKLANLLHKAGKKVVLAAGDTFRAAAVEQLTMWSQRIGCDIVTKESGSDPA 179

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+AY   ++A     DV+IIDTAGRL     LM  + K+ RV+ +  P  PH  L VLDA
Sbjct: 180 AVAYAGCERAVETGADVVIIDTAGRLQTQKNLMQELEKIYRVIGKKIPGGPHESLLVLDA 239

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN + Q E+F  +   TGL++ K+DGTA+GG ++ I     IPV ++GVGE I+DL+
Sbjct: 240 TTGQNGIIQAEVFSGIIDATGLVLAKLDGTAKGGVVVAIRQKMGIPVKYVGVGEQIDDLQ 299

Query: 300 PFVAKDFSAVIT 311
            F  + F+A + 
Sbjct: 300 VFNPEQFAAALV 311


>gi|255524258|ref|ZP_05391217.1| signal recognition particle protein [Clostridium carboxidivorans
           P7]
 gi|296185380|ref|ZP_06853790.1| signal recognition particle protein [Clostridium carboxidivorans
           P7]
 gi|255512083|gb|EET88364.1| signal recognition particle protein [Clostridium carboxidivorans
           P7]
 gi|296050214|gb|EFG89638.1| signal recognition particle protein [Clostridium carboxidivorans
           P7]
          Length = 454

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 151/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL+E +  +    +L +  +++ + +    L+ +D+   V +  ++++  K  
Sbjct: 2   AFEGLASKLQETLKKLRGKGKLSEKDIKDAMREVKLALLEADVNYKVVKDFIKKVSEKCL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V++ +  ++        +  S    +I++VG+ G GKTT+ GK
Sbjct: 62  GEEVLKSLTPAQQVVKIVNDELSNLMGSTESGVQFS-SSGLTMIMLVGLQGAGKTTMAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +      K +LAA D +R AAI QL++   +                ++  A + A+
Sbjct: 121 LALQFRKKNKKPLLAACDIYRPAAIKQLQVVGKQIDVPVFAMGDKVSPVDISKGAIEYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++V+IIDTAGRLH +  LM  +  +   +K      P  +L V+DA TGQ+A+    
Sbjct: 181 NNGLNVVIIDTAGRLHIDEELMNELKDVKENVK------PDEILLVVDAMTGQDAVNVAN 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG  RGG  + I      P+ F+G+GE ++D E F     ++ I
Sbjct: 235 SFNDQLDISGVILTKLDGDTRGGAALSIKAMTDKPIKFVGLGEKMSDFEVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|163858644|ref|YP_001632942.1| hypothetical protein Bpet4326 [Bordetella petrii DSM 12804]
 gi|163262372|emb|CAP44675.1| ffh [Bordetella petrii]
          Length = 469

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 147/317 (46%), Gaps = 28/317 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTQRLSRVVKTLRGEARLTEANTQEMLREVRMALLEADVALPVVREFVARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V++ +  ++         + S     P +IL+ G+ G GKTT  
Sbjct: 62  EEVVGSLSPGQALVGVVNKELTALMGGDLGAQAGELSLAVQPPAIILMAGLQGAGKTTTT 121

Query: 129 GKLSKKMSDAG----------LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GKL + ++  G           KV++ + D +R AAIDQLK  A++   DF+ S+     
Sbjct: 122 GKLGRWLAQGGHTQNGRNTGKKKVLVVSADVYRPAAIDQLKTVAEQAGIDFLPSDPSQKP 181

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A  A   A+    DVLI+DTAGRL  +  +M  I  +       D   P   L V+D
Sbjct: 182 EDIARNAVDHARRHHYDVLILDTAGRLGIDEAMMREIRVLH------DLVRPVETLFVVD 235

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+     F      TG+++TK+DG ARGG  + +      P+ F+GV E ++ L
Sbjct: 236 AMQGQDAVNTARAFADALPLTGVVLTKLDGDARGGAALSVRHVTGKPLKFVGVSEKLDGL 295

Query: 299 EPFVAKDFSAVITGCLD 315
           EPF     +  + G  D
Sbjct: 296 EPFHPDRMAQRVLGMGD 312


>gi|145296022|ref|YP_001138843.1| hypothetical protein cgR_1945 [Corynebacterium glutamicum R]
 gi|140845942|dbj|BAF54941.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 544

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 146/318 (45%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ +    +L +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLNSALSGLRGKGKLTEADINATAREIRLALLEADVSLTVVRAFINRIKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++  +    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVIKIVNEELVQILGGETRRLSL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           SK +   G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 SKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERAGVTTFAPDPGTSIDSLEHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A+  + D++I+DTAGRL  +  LM     +   +       P  VL V+
Sbjct: 181 PVEVARAGIEEAKRTQHDIVIVDTAGRLGIDETLMTQARNIREAIN------PDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+A+   E F      TG+++TK+DG ARGG  + I      P+ F   GE ++D
Sbjct: 235 DSMIGQDAVDTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLDD 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F  +  ++ I G  D
Sbjct: 295 FDVFHPERMASRILGMGD 312


>gi|218185264|gb|EEC67691.1| hypothetical protein OsI_35150 [Oryza sativa Indica Group]
          Length = 550

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 152/311 (48%), Gaps = 15/311 (4%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KL+    D+++   + + +R+ +   L+ +D+ + V ++ V  
Sbjct: 68  RAEMFGQLTTGLESAWNKLRGV--DVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVSS 124

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  K    D+       Q+++  V + + +++        +  S  P VIL+ G+ GVGK
Sbjct: 125 ISEKALGSDLIRGVRPEQQLVKIVHDELVQLMGGEVSDLVFAKSG-PTVILLAGLQGVGK 183

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TTV  KL+  +   G   ML A D +R AAIDQL I  ++           +  A +   
Sbjct: 184 TTVCAKLAFYLKKLGKSCMLVAADVYRPAAIDQLTILGEQVGVPVYSERTEAKPAQITKN 243

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A ++A+ K +D +++DTAGRL  +  +M  + ++ + +       P  VL V+DA TGQ 
Sbjct: 244 AVEEAKRKNIDAIVMDTAGRLQIDKSMMVELKEVKKAVN------PTEVLLVVDAMTGQE 297

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + +      P+ F+G GE + DLE F   
Sbjct: 298 AAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERMEDLELFYPD 357

Query: 305 DFSAVITGCLD 315
             +  + G  D
Sbjct: 358 RMAQRVLGMGD 368


>gi|86605466|ref|YP_474229.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           JA-3-3Ab]
 gi|86554008|gb|ABC98966.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           JA-3-3Ab]
          Length = 486

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 110/311 (35%), Positives = 184/311 (59%), Gaps = 2/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             ++++ E +SW++KL +    T L L   +  ++    LD    E +E +L+++D+GV 
Sbjct: 174 KPEEISVEEISWLQKLRRSLGKTRLNLINQLKALMGRGPLDREAVETIETMLLQADVGVE 233

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             ++I++ L  +   + V  +  +  + + + +ML  +  P         ++ L+VGVNG
Sbjct: 234 ATEQILQALQKRMREEVVPPEEAVKYLKQQMRQMLT-VGDPTFAPQRGTLNIWLIVGVNG 292

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
           VGKTT IGK++     +G + ++AA DTFR+AAI+QLKIWA+R   + + +    +D AA
Sbjct: 293 VGKTTTIGKIAHVARQSGYQCLIAAADTFRAAAIEQLKIWAERAGVEVIANPSPNADPAA 352

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A   A+A+  ++L++DTAGRL N   LM  + K+ R++ +  P A    L VLDAT
Sbjct: 353 VVFDAITAAKARGTELLLVDTAGRLQNKKNLMEELAKIRRIIDKKAPEAKVESLLVLDAT 412

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQN LRQ ++F  VA  TG+I+TK+D TA+GG  + I     +P+ F+G GEG+ DL P
Sbjct: 413 QGQNGLRQAQVFAEVAKLTGVILTKLDSTAKGGIALAITQQMNLPIRFIGAGEGLEDLRP 472

Query: 301 FVAKDFSAVIT 311
           F + +F   + 
Sbjct: 473 FSSYEFVEALL 483


>gi|327190186|gb|EGE57291.1| signal recognition particle GTP-binding protein [Rhizobium etli
           CNPAF512]
          Length = 571

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 84/313 (26%), Positives = 148/313 (47%), Gaps = 19/313 (6%)

Query: 15  RKLTK--GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVE 68
           +++ +   F +   +L   +  +     L +        E+   L+ +D+ + V +   +
Sbjct: 40  KRIKEEPMFENLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTD 99

Query: 69  ELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +  K    ++       Q V+  V + + +ML       +   +  P V+++VG+ G G
Sbjct: 100 RVREKAVGAEILKSIKPGQMVVKIVHDELIEMLGGEGVGIDL-HAPAPVVVMMVGLQGSG 158

Query: 124 KTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT   KL+ ++S     KV++A+ DT R AA +QL+    + S D +    G     +A
Sbjct: 159 KTTTTAKLAHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQASIDTLPVISGQSPTDIA 218

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             A + A+    DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TG
Sbjct: 219 ARAVQAAKLGGHDVVILDTAGRTHIDEPLMVEMADIKKRSN------PHEILLVADSLTG 272

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+     F    G TGL++T+MDG  RGG  + +      P+  +GVGE +++LE F 
Sbjct: 273 QDAVNLARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFH 332

Query: 303 AKDFSAVITGCLD 315
            +  +  I G  D
Sbjct: 333 PRRIADRILGMGD 345


>gi|225419774|ref|ZP_03762077.1| hypothetical protein CLOSTASPAR_06112 [Clostridium asparagiforme
           DSM 15981]
 gi|225041578|gb|EEG51824.1| hypothetical protein CLOSTASPAR_06112 [Clostridium asparagiforme
           DSM 15981]
          Length = 314

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 179/308 (58%), Gaps = 4/308 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++     +  +L +G   T   +  GI  I S    +DD   EE+E+ LI  DIG+    
Sbjct: 1   MSEGKKGFFGRLVEGLTKTRNNIVSGIDSIFSGFSAIDDDFYEEIEETLIMGDIGIQTTM 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVG 123
            IVE+L  K     +       ++  LI+ +   +      ++F H+  V+LV+GVNGVG
Sbjct: 61  SIVEDLRRKVKELHIKEPEECKEL--LINSIKDQMDLGENAYEFEHKKSVVLVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ ++ D G KV+LAA DTFR+AAI+QL  W++R   + +  + GSD AA+ Y
Sbjct: 119 KTTSVGKLAGQLKDQGRKVILAAADTFRAAAIEQLTEWSNRAGVEIIAQQEGSDPAAVIY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+++  DVLI DTAGRLHN   LM  + K+ R++ +    A    L VLD TTGQ
Sbjct: 179 DAVAAAKSRHADVLICDTAGRLHNKKNLMEELRKINRIIDKEYADAYRETLVVLDGTTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F  VA  TG+I+TK+DGTA+GG  + I     +PV ++G+GE I+DL+ F A
Sbjct: 239 NALAQARQFMEVADITGIILTKLDGTAKGGIAVAIQSELGLPVKYIGIGEKIDDLQKFNA 298

Query: 304 KDFSAVIT 311
            DF   + 
Sbjct: 299 DDFVNALF 306


>gi|189500233|ref|YP_001959703.1| signal recognition particle protein [Chlorobium phaeobacteroides
           BS1]
 gi|189495674|gb|ACE04222.1| signal recognition particle protein [Chlorobium phaeobacteroides
           BS1]
          Length = 449

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 155/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+     +     +++        +++  L+ +D+   VA+K V+E+ ++   
Sbjct: 2   FDNLSDKLEASFKKLAGQATINEVNIGIAMRDIKRALLSADVNYKVAKKFVDEVRSRALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  VS+ + +++    KP N   +  P V++V G+ G GKTT   KL
Sbjct: 62  QDVVKSVSPAQMIVKIVSDELTEIMGGEHKPLNLTTNKLPSVVMVAGLQGSGKTTFCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K++   G   +LAA D +R AA++QLK   ++        E+   A  +A +A + A+ 
Sbjct: 122 AKRLKKNGKHPLLAAADVYRPAAVEQLKTLGEQIEVPVFSLEVKD-ALKVALDAVESARN 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  +  +MA    +   LK      P  +L V+DA  GQ A+   ++
Sbjct: 181 NGNDVVIVDTAGRLQVDEGMMAEAEALKDQLK------PEELLFVVDAMIGQEAVNTAKV 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG ARGG  + I      P+ F+ VGE ++DL+ F     +  I 
Sbjct: 235 FNERLDFDGVVLTKLDGDARGGSALSIKQVVDKPIKFMSVGEKVDDLDLFYPDRMAQRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|253573489|ref|ZP_04850832.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251847017|gb|EES75022.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 335

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 123/310 (39%), Positives = 191/310 (61%), Gaps = 2/310 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           + +AS++ S  ++   G   +     E +T++++  +++D+   EELE++LI +D+GV  
Sbjct: 9   ESIASKTESVTKQFRDGLEKSRKGFVEKVTELVTRRKKIDEEFFEELEEILIGADVGVNT 68

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             K++++L  +   + +     L  + SE + ++L                VIL VGVNG
Sbjct: 69  VMKLIDDLRAEVKQRRIENASELQPLLSEKLTQLLRGDEDSEMHLNPDGISVILFVGVNG 128

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+      G KV+LAAGDTFR+ AI+QL++W +R   D +  + GSD AA+
Sbjct: 129 VGKTTTIGKLAHFYKQQGKKVILAAGDTFRAGAIEQLEVWGNRVGVDVIKQQAGSDPAAV 188

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A + A+ +  D+L+ DTAGRL N S LM  + K+ RV++R  P APH VL VLDATT
Sbjct: 189 MFDAVQAAKQRGADILLCDTAGRLQNKSNLMEELNKIYRVIQREIPGAPHEVLMVLDATT 248

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q ++F   +G TGL++TK+DGTA+GG +I I     +PV F+G+GE + DL+ F
Sbjct: 249 GQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRQELSLPVKFVGLGEKMEDLQKF 308

Query: 302 VAKDFSAVIT 311
            ++ F   + 
Sbjct: 309 DSEQFVHGLF 318


>gi|282920020|ref|ZP_06327749.1| signal recognition particle protein [Staphylococcus aureus A9765]
 gi|282594736|gb|EFB99720.1| signal recognition particle protein [Staphylococcus aureus A9765]
          Length = 455

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    +L +     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + +++   +   N   +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQDELTQLMGGENTSINMS-NKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML A D +R AAI+QL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P+ ++ V+D+ TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK------PNEIMLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 ESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|227503356|ref|ZP_03933405.1| signal recognition particle protein [Corynebacterium accolens ATCC
           49725]
 gi|306836401|ref|ZP_07469379.1| signal recognition particle protein [Corynebacterium accolens ATCC
           49726]
 gi|227075859|gb|EEI13822.1| signal recognition particle protein [Corynebacterium accolens ATCC
           49725]
 gi|304567761|gb|EFM43348.1| signal recognition particle protein [Corynebacterium accolens ATCC
           49726]
          Length = 546

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 149/319 (46%), Gaps = 30/319 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+  +  +    +L +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FDSLSDRLQSALAGLRGKGKLTEADINATTREIRLALLEADVSLTVVRGFIKRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPAQQVVKIVNEELIEILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           +K ++  G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 AKHLTKQGHTPMLVACDLQRPGAVQQLQIVGERAEVPTFAPDPGTSLDSNDHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A     +A+ K+ DV+IIDTAGRL  +  LM     +       D   P  VL V+
Sbjct: 181 PVDVAKRGIAEAKQKQHDVVIIDTAGRLGIDETLMTQARNI------RDAVNPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+A++  E F      TG+++TK+DG ARGG  + I      P+ +   GE ++D
Sbjct: 235 DSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPILYASTGEKLDD 294

Query: 298 LEPFVAKDFSAVITGCLDY 316
            + F  +  S+ I G  D 
Sbjct: 295 FDVFHPERMSSRILGMGDL 313


>gi|119478672|ref|ZP_01618562.1| signal recognition particle protein [marine gamma proteobacterium
           HTCC2143]
 gi|119448398|gb|EAW29650.1| signal recognition particle protein [marine gamma proteobacterium
           HTCC2143]
          Length = 456

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  I    RL +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FETLTERLSHSLKSITGQARLTEDNIKDTLREVRMALLEADVALPVVKDFIDTVKQRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q  +  V++ +  M+   ++  N   +  P VIL+ G+ G GKTT + KL
Sbjct: 62  QDVGKSLNPGQMFVKIVNDELETMMGSANESLNLS-TQPPAVILMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K VM+ + D +R AAI QL+  A    A F  S        +   A  +A+
Sbjct: 121 ARFLKEKEKKKVMVVSADVYRPAAIKQLETLATEVEATFFPSSDDQKPIDIVNGAIAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRL  +  +MA I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 VQFADVLIVDTAGRLAIDEAMMAEIKQLHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+     TG+I+TK D  +RGG  + +      P+ FLGVGE    L+PF     ++ I
Sbjct: 235 VFNDALPLTGVILTKADADSRGGAALSVRQITGKPIKFLGVGEKTTALDPFHPDRIASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|82750841|ref|YP_416582.1| signal recognition particle protein [Staphylococcus aureus RF122]
 gi|82656372|emb|CAI80790.1| signal recognition particle protein [Staphylococcus aureus RF122]
          Length = 455

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    +L +     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + K++   +   N   +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS-NKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML A D +R AAI+QL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P+ ++ V+D+ TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK------PNEIILVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 ESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|329667089|gb|AEB93037.1| signal recognition particle protein [Lactobacillus johnsonii DPC
           6026]
          Length = 476

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 18/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L++ + ++    ++ +        E+   L+ +D+   V +  ++++  +  
Sbjct: 2   AFENLSERLQKALKNLTGKGKISEADINDASREIRLALLEADVNFKVVKDFIKKIKKEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V + + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQDSLNPGQQIIKIVDDELTKMMGEETVSLNKS-PHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAI+QLK    +       SE   D A +     ++A
Sbjct: 121 LANYLMKNEKARPLLIAGDIYRPAAIEQLKQIGQQLDVSVY-SEDNQDVAEIVKHGLEEA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K D ++IDTAGRL  +  LM     + RV +   P    + L V+DA TGQ A +  
Sbjct: 180 DKNKNDYVLIDTAGRLEIDEQLMDE---LKRVTEVAHP---DNTLLVVDAMTGQAATQVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     TG+++TK+DG  RGG  + I     +P+ F G GE + DL  F     ++ 
Sbjct: 234 EGFNNDLDLTGIVLTKLDGDTRGGAALSIRAVTGLPIIFTGQGEKLTDLSTFHPDRMASR 293

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 294 ILGMGDM 300


>gi|227432059|ref|ZP_03914073.1| signal recognition particle-docking protein FtsY [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352176|gb|EEJ42388.1| signal recognition particle-docking protein FtsY [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 408

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 115/297 (38%), Positives = 171/297 (57%), Gaps = 10/297 (3%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
            G   +     +     +++ R +D+   E+LE+ L+ +D+G  +A KI +EL  +   K
Sbjct: 104 AGLKKSRTGFADRFNRFLANFRSVDENFFEDLEETLVGADVGFDMAIKISDELREEVKLK 163

Query: 78  DVSVQRVLYDVSELIHKMLM-------PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           +   +  + DV  +I KM+              N+    +  VIL VGVNGVGKTT IGK
Sbjct: 164 NAKRKEDVRDV--IIKKMVDLYEADGINEDATMNFAPKGQTTVILFVGVNGVGKTTTIGK 221

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K   AG  V+LAA DTFR+ A  QL+ W +      V  +  +D A++ + A ++A+
Sbjct: 222 LASKYQKAGKSVLLAAADTFRAGATKQLQEWGECAYVPVVAGKEKADPASVVFAAVEKAR 281

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL IDTAGRL NN  LM  + KM R+++R  P APH VL VLDATTGQNAL+Q +
Sbjct: 282 DENYDVLFIDTAGRLQNNVNLMQELEKMKRIIQREIPEAPHEVLLVLDATTGQNALQQAK 341

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           +F   +  +G+++TKMDGTA+GG +  I     +PV ++G GE  +DL  F  ++F 
Sbjct: 342 LFKNSSDVSGIVLTKMDGTAKGGIVFSIRNEMHLPVKWIGFGEKASDLREFNPEEFV 398


>gi|311108979|ref|YP_003981832.1| signal recognition particle protein [Achromobacter xylosoxidans A8]
 gi|310763668|gb|ADP19117.1| signal recognition particle protein [Achromobacter xylosoxidans A8]
          Length = 467

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 148/317 (46%), Gaps = 28/317 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTQRLSRVVKTLRGEARLTEANTQEMLREVRMALLEADVALPVVREFVARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++       + + S     P VIL+ G+ G GKTT  
Sbjct: 62  EEVASSLSPGQALVGVVHKELTSLMGGDLGADSGELSLAVQPPAVILMAGLQGAGKTTTT 121

Query: 129 GKLSKKM----------SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GKL++ +               KV++ + D +R AAIDQLK  A +   DF+ S+     
Sbjct: 122 GKLARWLSEGQHTQHGRKTGKKKVLVVSADVYRPAAIDQLKSVAAQVGVDFLPSDPSQKP 181

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A  A   A+    DVLI+DTAGRL  +  +M  I  +  ++K      P   L V+D
Sbjct: 182 EDIARNAVDHARRHHYDVLILDTAGRLGIDEAMMREIRALHDLVK------PVETLFVVD 235

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+     F      TG+++TK+DG ARGG  + +      P+ F+GV E ++ L
Sbjct: 236 AMQGQDAVNTARAFAEALPLTGVVLTKLDGDARGGAALSVRHVTGKPLKFVGVSEKLDGL 295

Query: 299 EPFVAKDFSAVITGCLD 315
           EPF  +  +  + G  D
Sbjct: 296 EPFYPERMAQRVLGMGD 312


>gi|194466491|ref|ZP_03072478.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri 100-23]
 gi|194453527|gb|EDX42424.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri 100-23]
          Length = 506

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 181/311 (58%), Gaps = 5/311 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S +    +    ++K  +G   +       +   +++ R +D+   ++LED+LI SD+G 
Sbjct: 185 SPEPEEDQETETVKKYDRGLEKSRTGFGARLNKFLANFRHVDEDFFDDLEDMLIESDVGY 244

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDF---SHRPHVILV 116
            +A K+ +EL  +   ++   ++ + +V  E + ++     +  N D       P VI+ 
Sbjct: 245 DMAMKLSDELREEVKLQNAKSKQDVSNVIIEKMVELYDEAGQDENPDLTMAKEGPTVIMF 304

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT IGK++      G KV+LAA DTFR+ A +QL +WA R   D V      
Sbjct: 305 VGVNGAGKTTTIGKMAALFKKQGKKVLLAAADTFRAGATEQLDVWAKRDGVDIVTGPENG 364

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A K+A+ +K D+L +DTAGRL N   LM  + KM R+L R  P APH VL V
Sbjct: 365 DPAAVVFDAVKRAKDEKYDILFVDTAGRLQNKVNLMNELAKMKRILNREIPDAPHEVLLV 424

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL Q ++F      TG+++TK+DGTARGG ++ I     +PV ++G+GE ++
Sbjct: 425 LDATTGQNALNQAKLFKESTDVTGIVLTKLDGTARGGIVLAIRNELHLPVKYVGLGEKVD 484

Query: 297 DLEPFVAKDFS 307
           DL+ F A DF 
Sbjct: 485 DLQKFDAGDFV 495


>gi|189499337|ref|YP_001958807.1| signal recognition particle-docking protein FtsY [Chlorobium
           phaeobacteroides BS1]
 gi|189494778|gb|ACE03326.1| signal recognition particle-docking protein FtsY [Chlorobium
           phaeobacteroides BS1]
          Length = 314

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 185/313 (59%), Gaps = 11/313 (3%)

Query: 11  LSWIR-----KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQ 64
           + +       +L  G   T   ++E I+ I   R  +D+   EELE++LI +D+GV    
Sbjct: 1   MGFFDKLKISRLKDGLTKTRESIRENISRITQGRTDIDESFLEELENILIAADVGVETTL 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKP----FNWDFSHRPHVILVVGV 119
            IVE +  K   +    +  L   + +++ +ML+         F+ D   +P+VILVVGV
Sbjct: 61  NIVERITEKAEKETYHSEDELNSMLMKVMEEMLLDTPDSHPVDFDADLPEKPYVILVVGV 120

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT I KL+   + AG KV++AA DTFR+AA+ QL+IWADR     V     +D A
Sbjct: 121 NGVGKTTSIAKLAHNYNRAGKKVIIAAADTFRAAAVQQLQIWADRAGVPMVSQGQNADPA 180

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A   A AK  DV+++DTAGRLHN S LM  + K++RV K+    APH VL VLD 
Sbjct: 181 SVVFDAVSSAVAKGADVVLVDTAGRLHNKSHLMEELAKIMRVAKKKVAAAPHEVLLVLDG 240

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F      +GLI+TK+DG+A+GG ++ I    ++PV ++GVGE I+DL+
Sbjct: 241 TTGQNAVSQAKEFAKCVQVSGLIVTKLDGSAKGGIVLSISREMELPVKYIGVGEKIDDLQ 300

Query: 300 PFVAKDFSAVITG 312
            F    F   + G
Sbjct: 301 IFDRGKFVEALLG 313


>gi|163858287|ref|YP_001632585.1| signal recognition particle receptor GTPase [Bordetella petrii DSM
           12804]
 gi|163262015|emb|CAP44317.1| signal recognition particle receptor GTPase [Bordetella petrii]
          Length = 321

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 178/308 (57%), Gaps = 11/308 (3%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           +  SW+ +L +G + T   L      +    ++D+ + EELE  LI +D G+   ++++ 
Sbjct: 18  KKTSWLGRLKQGLSRTGQSLGG----LFVGVKVDENLFEELESALIMADAGLEATEQLLT 73

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +   + +     +   + +++   L PL + F+   +  P V+++ GVNG GKTT 
Sbjct: 74  ALRARVRKERIENPAQVKQALRQVLADHLRPLERQFDLRRA-SPLVVMIAGVNGAGKTTS 132

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+      G  V+LAAGD FR+AA +QL  W  R +   +  E G D AA+A++A  
Sbjct: 133 IGKLAHTFQRQGASVLLAAGDIFRAAAREQLIEWGSRNNVSVIAQE-GGDPAAVAFDAVN 191

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A+   V+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL 
Sbjct: 192 AGRARGAGVVMVDTAGRLPTQLHLMEELKKIRRVIGKADGAAPHEVLLVVDGNTGQNALA 251

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVA 303
           Q+  F A  G TGL++TK+DGTA+GG L  +    +    +PVY++GVGEG+ DL+PFVA
Sbjct: 252 QIRAFDAAIGLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGMEDLQPFVA 311

Query: 304 KDFSAVIT 311
            +F+  + 
Sbjct: 312 DEFAGALL 319


>gi|29347011|ref|NP_810514.1| putative signal recognition protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572648|ref|ZP_04850049.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29338909|gb|AAO76708.1| putative signal recognition protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251837780|gb|EES65870.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 440

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 149/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKTFTDTVKEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +   N +   RP VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGETVEINLE--SRPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++ A++            +   +A  A ++A+
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYSELDSKNPVEIAQHAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  +   +       P  +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDLVIVDTAGRLAVDEQMMNEITAIKEAIN------PDEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|322385043|ref|ZP_08058693.1| cell division protein FtsY [Streptococcus cristatus ATCC 51100]
 gi|321270953|gb|EFX53863.1| cell division protein FtsY [Streptococcus cristatus ATCC 51100]
          Length = 498

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 172/311 (55%), Gaps = 3/311 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +    +  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV V
Sbjct: 184 ETAEYQEESVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEDFFEDLEELLITSDVGVQV 243

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           A  + E+L  +   ++      L    + +L+             +F +   V+L VGVN
Sbjct: 244 ASNLTEDLRYEARLENAKKPDALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVN 303

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A+
Sbjct: 304 GVGKTTSIGKLAYKYKQEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPAS 363

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++  ++A+A+ VD+L+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+
Sbjct: 364 VVFDGLERAKAENVDILMIDTAGRLQNKDNLMAELEKIGRIIKRVDPAAPHETFLALDAS 423

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  
Sbjct: 424 TGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGE 483

Query: 301 FVAKDFSAVIT 311
           F +++F   + 
Sbjct: 484 FNSENFMRGLL 494


>gi|329894268|ref|ZP_08270154.1| Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)
           [gamma proteobacterium IMCC3088]
 gi|328923199|gb|EGG30521.1| Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)
           [gamma proteobacterium IMCC3088]
          Length = 454

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  I    +L +        E+   L+ +D+ + V +   E +  +   
Sbjct: 2   FQSLSDRLSATLKSISGKAKLSEDNIQGTLREVRMALLEADVALPVVKTFTEAVKQRALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  L  V   +   +   ++  N   +  P +IL+ G+ G GKTT + KL
Sbjct: 62  QEVAQALSPGQAFLKIVQSELESTMGSANESLNL-ATQPPAIILMAGLQGAGKTTSVAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++       V + + D +R AAI QL+  A    A F+ S++      +A  A + A+
Sbjct: 121 ARRLIEREKKSVSVVSADVYRPAAIKQLETLAQEVGARFIPSDMNESPVEIAKRAVQTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGRL  ++ +MA I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 TQFSDVLLVDTAGRLAIDAEMMAEIKDLHAAID------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+D   RGG  + +      P+ FLGVGE    L+PF     ++ I
Sbjct: 235 AFGDALPLTGVILTKVDADVRGGAALSVRSITGKPIKFLGVGEKTQALDPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|160943022|ref|ZP_02090260.1| hypothetical protein FAEPRAM212_00499 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445716|gb|EDP22719.1| hypothetical protein FAEPRAM212_00499 [Faecalibacterium prausnitzii
           M21/2]
          Length = 451

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 141/305 (46%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L      +    +L +   +    E+   L+ +D+   VA+    ++  +  
Sbjct: 2   AFESLTDRLAGVFKKLRGHGKLTEADIKAAMREVRMALLEADVNYKVAKDFCAKVSERAM 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E +  ++           +    VI++ G+ G GKTT   K
Sbjct: 62  GQEVMESLTPAQQVVKIVNEELVALMGGSEAARLNIKNKGQTVIMLCGLQGNGKTTHAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K     G + ML A D +R AAIDQL++   +  A       G+    +A +A   A+
Sbjct: 122 LAKFYIKQGRRPMLVACDIYRPAAIDQLQVVGKQAGAPVFTL-PGAKPPEIARKALAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGRL  + +LM  +  +   +           L V+DA  GQ+A+   +
Sbjct: 181 DYGNDIVILDTAGRLQIDEVLMQELVDIKAAVP------VDETLLVVDAMAGQDAVNVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK DG  RGG  + ++     P+ F G GE ++DL+ F     ++ I
Sbjct: 235 TFNETVGVDGIILTKTDGDTRGGAALSVLAVTGKPIKFQGTGEKLDDLDVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|313891634|ref|ZP_07825241.1| signal recognition particle-docking protein FtsY [Dialister
           microaerophilus UPII 345-E]
 gi|313119912|gb|EFR43097.1| signal recognition particle-docking protein FtsY [Dialister
           microaerophilus UPII 345-E]
          Length = 313

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 122/302 (40%), Positives = 188/302 (62%), Gaps = 3/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S+  ++ KG   T   L + I  I I    +D+   + LE +L+  D+GV     ++ +
Sbjct: 1   MSFFDRIKKGLEKTKKGLIQNIESIVIGYAHIDEEFLDNLEMILVSGDLGVRTTDYLMRQ 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +       ++S    +    E    M+  L++    + +H P V L+VGVNGVGKTT IG
Sbjct: 61  IRRGVKEGNISNTSEVMPFIE--KTMIELLTENDEKEENHVPEVYLIVGVNGVGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +MS AG KV+LAAGDT+R+AA +QL IWA+RT +D V    G+D AA+A++A   A
Sbjct: 119 KLAYQMSKAGKKVLLAAGDTYRAAASEQLTIWAERTGSDIVKHAEGADPAAVAFDALTAA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +DV+++DTAGR+   + LM  +GK+ +V+K++ P APH  L VLDATTGQNA+ Q 
Sbjct: 179 KARNIDVVLVDTAGRIQTKTNLMNELGKINKVMKKVIPDAPHQTLLVLDATTGQNAVSQA 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  V   TG+++TK+DGTA+GG ++ I    K+PV ++G+GE  +DL+ F A  F   
Sbjct: 239 KHFKEVVDITGIVLTKLDGTAKGGVVLSIHEELKVPVKWIGLGEREDDLQKFDASVFVKA 298

Query: 310 IT 311
           + 
Sbjct: 299 LF 300


>gi|33866152|ref|NP_897711.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH
           8102]
 gi|33639127|emb|CAE08133.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH
           8102]
          Length = 487

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++ D       +++   L+ +D+ + V +  V ++  K   
Sbjct: 2   FDELSARFEDAVKGLKGQDKISDTNVEVALKDVRRALLEADVSLPVVKDFVADVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V E + +++   + P     +  P V+L+ G+ G GKTT   KL
Sbjct: 62  AEVVRGVSPDQKFIQVVHEQLVEVMGGDNAPL-AKAAEAPTVVLMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + D G + ++   D +R AAI+QLK    +   +       +    +A     +A+ 
Sbjct: 121 GLHLKDQGRRALMVGADVYRPAAIEQLKTLGGQIGVEVFSLGTEAKPEEIAAAGLAKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D L++DTAGRL  ++ +M  + ++   ++      P  VL V+D+  GQ A      
Sbjct: 181 EGFDTLLVDTAGRLQIDTEMMEEMVRIRTAVQ------PDEVLLVVDSMIGQEAAELTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHDQVGITGAVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|260912750|ref|ZP_05919236.1| signal recognition particle protein [Pasteurella dagmatis ATCC
           43325]
 gi|260633128|gb|EEX51293.1| signal recognition particle protein [Pasteurella dagmatis ATCC
           43325]
          Length = 458

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FENLSDRLSKTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVRDFINKVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  VEVNKSLTPGQEFVKIVQAELEVAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A    A F  S++  +  A+A  A  +A+
Sbjct: 121 AKFLKERHKKKVLVVSADVYRPAAIKQLETLAQAVGASFFPSDVSQNPVAIAQAALAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDGEMMDEIKQIHAALN------PIETLFTVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF  +  ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|283798074|ref|ZP_06347227.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           M62/1]
 gi|291074216|gb|EFE11580.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           M62/1]
          Length = 311

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 179/308 (58%), Gaps = 4/308 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++     +  +L +G   T   +  GI  I S    +DD   EE+E+ LI  D+G+    
Sbjct: 1   MSEGRKGFFGRLVEGLTKTRNSIVAGIDTIFSGFSAIDDDFYEEIEETLIMGDLGIQTTM 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVG 123
            I+E+L  K     +       ++  LI  +   +      ++F +R  V+LV+GVNGVG
Sbjct: 61  AIMEDLRAKVKEHHIKEPSDCKEL--LIESIRSQMDLGENAYEFENRKSVVLVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ ++   G KV+LAA DTFR+AAI+QL  WA+R   D +  + GSD AA+ Y
Sbjct: 119 KTTSVGKLAGQLKGQGKKVILAAADTFRAAAIEQLTEWANRAGVDLIAQQEGSDPAAVIY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+++  DVLI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQ
Sbjct: 179 DAIAAAKSRHADVLICDTAGRLHNKKNLMEELKKINRIIDKEFPEAYRETLVVLDGTTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F  VA  TG+I+TK+DGTA+GG  + I     IPV ++G+GE I+DL+ F A
Sbjct: 239 NALSQAKQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYVGIGEKIDDLQKFNA 298

Query: 304 KDFSAVIT 311
            DF   + 
Sbjct: 299 NDFVNALF 306


>gi|296394376|ref|YP_003659260.1| signal recognition particle protein [Segniliparus rotundus DSM
           44985]
 gi|296181523|gb|ADG98429.1| signal recognition particle protein [Segniliparus rotundus DSM
           44985]
          Length = 516

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 145/315 (46%), Gaps = 26/315 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S S +L   ++ +    +L +   +     +   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FSSLSDRLVGALSQLRGKGKLSEEDIDVTCKHIRIALLEADVALPVVREFVARVKERAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +S      Q+V+  V E + ++L   S+   W     P VI++VG+ G GKTT+ GKL
Sbjct: 62  VALSGALNPAQQVVKIVDEELTEILGGESRRL-WLAKTPPTVIMLVGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI----------GSDAAAL 181
           +K +   G   +L A D  R  A+ QL++ A+R        +             D  A+
Sbjct: 121 AKWLKSQGHAPLLVACDLQRPGAVKQLQVVAERAGVAVHAPQPGASLEHDGVTAGDPVAV 180

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A    + A+ +  DV+++DTAGRL  +  LMA    +       D  +P  VL  +DA  
Sbjct: 181 ARSGVQLAREQHHDVVVVDTAGRLGVDQELMAQAAAI------RDAVSPDEVLFTVDAMI 234

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+AL     F    G TG+++TK+DG ARGG  + +      P+ F   GE + D + F
Sbjct: 235 GQDALHAATAFDQGVGFTGVVLTKLDGDARGGAALSVRQVTGKPILFASSGEKLEDFDVF 294

Query: 302 VAKDFSAVITGCLDY 316
                S+ I    D 
Sbjct: 295 HPDRMSSRILDMGDL 309


>gi|5714433|gb|AAD47910.1|AF120112_1 chloroplast SRP receptor homolog, alpha subunit CPFTSY [Arabidopsis
           thaliana]
          Length = 366

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 181/311 (58%), Gaps = 6/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL--DDGVREELEDLLIRSDIGVAVA 63
           +  ++ S + K+  GF+ T   L   I +++    L   D V +ELE+ L+ SD G  + 
Sbjct: 56  IKEKAKSDVEKVFSGFSKTRENL-AVIDELLLFWNLAETDRVLDELEEALLVSDFGPKIT 114

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
            +IVE L     +  +     + D + E + +ML   +          +P VI++VGVNG
Sbjct: 115 VRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNG 174

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT +GKL+ ++ + G KV++AAGDTFR+AA DQL+IWA+RT  + V +E   + AA 
Sbjct: 175 GGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 234

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A K+ + +  DV++ DT+GRLH N  LM  +    + + ++   AP+ +L VLD  
Sbjct: 235 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGN 294

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L Q   F+ V G TGLI+TK+DG+ARGG ++ +V    IPV F+GVGE + DL+P
Sbjct: 295 TGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQP 354

Query: 301 FVAKDFSAVIT 311
           F  + F   I 
Sbjct: 355 FDPEAFVNAIF 365


>gi|168001070|ref|XP_001753238.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695524|gb|EDQ81867.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 617

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 152/307 (49%), Gaps = 15/307 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             +LT    +   KLK+   D+++   + + +++ +   L+ +D+ + V ++ V+ +  K
Sbjct: 127 FDQLTDSLEAAWSKLKK--EDVLTKDNIKEPMKD-IRRALLEADVSLPVVRRFVKSVSEK 183

Query: 74  RYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                V       Q+++  V++ +  ++        +  S  P VIL+ G+ GVGKTT  
Sbjct: 184 AIGMGVVRGVRPDQQLVKVVNDELVGLMGGEMVGIEFAKSG-PTVILMAGLQGVGKTTAC 242

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G  VM+ A D +R AAIDQL     +       +      A +A     +
Sbjct: 243 GKLALFCKKKGKSVMMVATDVYRPAAIDQLVTLGKQVEVPVFEAGNQLRPAEIAKRGLAE 302

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + + +DV+I+DTAGRL  +  +M  + ++ +V+       P  VL V+DA TGQ A   
Sbjct: 303 GKKQGIDVIIVDTAGRLQVDRGMMDELKQIKQVVN------PTEVLLVVDAMTGQEAAGL 356

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V  F+   G TG I+TK+DG +RGG  + +      P+ F+G GEG+  LEPF     ++
Sbjct: 357 VASFNLEIGITGAILTKLDGDSRGGAALSVKEVSNKPIKFVGEGEGMTALEPFYPDRMAS 416

Query: 309 VITGCLD 315
            I G  D
Sbjct: 417 RILGMGD 423


>gi|297584010|ref|YP_003699790.1| signal recognition particle-docking protein FtsY [Bacillus
           selenitireducens MLS10]
 gi|297142467|gb|ADH99224.1| signal recognition particle-docking protein FtsY [Bacillus
           selenitireducens MLS10]
          Length = 336

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 189/313 (60%), Gaps = 4/313 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+++++ S   K   G + T       + D++   R +D+   EELE++LI +D+GV 
Sbjct: 8   KEKISTQTDSVTDKFRDGLSKTRDSFVGAMNDLVKDFREIDEDFFEELEEILIGADVGVH 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKML--MPLSKPFNWDFSHRPHVILVVG 118
              ++VEEL  +   +++     +  V SE + +ML         N        VIL VG
Sbjct: 68  TVMELVEELKDEARTRNIKHAEDIRPVISEKLAEMLQKSENESKLNMQPEGELTVILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ +  + G KV++AAGDTFR+ AI+QL++W +R+  D +  + GSD 
Sbjct: 128 VNGVGKTTSIGKLAHQFKEDGKKVVMAAGDTFRAGAIEQLEVWGERSGVDVIKQQAGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A++KK DVL+ DTAGRL N   LM  + K+ RVL R  P APH VL VLD
Sbjct: 188 AAVMYDAIQSAKSKKADVLLCDTAGRLQNKVNLMNELEKVKRVLAREIPSAPHEVLLVLD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      +G+++TK+DGTA+GG ++ I     IPV  +G+GE I+DL
Sbjct: 248 ATTGQNAMSQAKAFGQATDVSGIVLTKLDGTAKGGIVLAIRNELDIPVKLVGLGEKIDDL 307

Query: 299 EPFVAKDFSAVIT 311
             F A+ +   + 
Sbjct: 308 HEFRAEQYVHGLF 320


>gi|258592176|emb|CBE68485.1| Cell division transporter substrate-binding protein FtsY (Signal
           recognition particle receptor) [NC10 bacterium 'Dutch
           sediment']
          Length = 314

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 178/306 (58%), Gaps = 2/306 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +       +   G A T   L   I  +           E LE+ LI +D G A+AQ+++
Sbjct: 6   TPRQGLFGRFVVGLARTRQGLAGQIGRLFGGNVPSAADLEALEEALIAADFGPALAQQLM 65

Query: 68  EELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKP-FNWDFSHRPHVILVVGVNGVGKT 125
             L  +   +D+S    +    +  I ++L  ++ P    D   RP V+L +G+NG GKT
Sbjct: 66  TPLHQRLSRRDLSNLDQVEAALKHGILEILSGVAPPPSATDHQTRPQVLLFLGINGSGKT 125

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ ++   G  V+LA  DTFR+AAI+QL +W  R  AD VC + G+D +A+ ++A
Sbjct: 126 TTIGKLASRLIAEGGHVVLAGADTFRAAAIEQLGLWGQRVGADVVCHQAGADPSAVVFDA 185

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A ++    L+IDTAGRLH    LM  + K+ RV+ R  P APH  + VLDAT+G NA
Sbjct: 186 VQAACSRGASHLLIDTAGRLHTKRNLMEELKKIQRVVSRQIPDAPHQRIMVLDATSGLNA 245

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q + FH   G TGLI+TK+DGTA+GG ++ I    K+P+ F+G+GEG++DL+PFV + 
Sbjct: 246 LVQAKHFHEAVGLTGLILTKLDGTAKGGVVVAIADRLKLPITFVGLGEGVDDLQPFVPET 305

Query: 306 FSAVIT 311
           F+  + 
Sbjct: 306 FTDALF 311


>gi|160915188|ref|ZP_02077401.1| hypothetical protein EUBDOL_01196 [Eubacterium dolichum DSM 3991]
 gi|158432987|gb|EDP11276.1| hypothetical protein EUBDOL_01196 [Eubacterium dolichum DSM 3991]
          Length = 470

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L +   +I    +L +     +  E+   L+ +D+   V +  +  +  K  
Sbjct: 2   AFESLSDRLTKAFKNITGKGKLTEKNMNDMLREVRMSLLEADVNYGVVKDFIARIKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V + I  +L     P N+  +     I++VG+ G GKTT   K
Sbjct: 62  GEEVLGSLNPGQMVVKIVHDEIVDLLGSEDAPINYKANGI-TTIMMVGLQGTGKTTASAK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++  M      K +L A D  R AAI+QLK        +     I + A   A  A + A
Sbjct: 121 IANVMQKKQARKPLLVACDVVRPAAIEQLKTLGKSIGVEVFSLGIETKALDTAKAAMEYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D +++DTAGRLH +  LM  +  +   ++      P  +L  +DA TGQ+ +   
Sbjct: 181 REHGYDTVLLDTAGRLHIDDALMQELADIKSFVQ------PDDILLTVDAMTGQDIVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             FH     +GL++TK+DG +RGGG++ +     +PV F+G+GE I DL+ F     +  
Sbjct: 235 SSFHEQLQVSGLVVTKLDGDSRGGGVLSVRSITGVPVKFVGLGEKIEDLDVFHPSRMADR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|325509166|gb|ADZ20802.1| Signal recognition particle GTPase, FtsY [Clostridium
           acetobutylicum EA 2018]
          Length = 303

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 131/302 (43%), Positives = 188/302 (62%), Gaps = 4/302 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           ++  KL  G + T   L   I+D+++S   +DD + +ELE++LI SDIGV  +  I+++L
Sbjct: 4   NFFDKLKNGLSKTKNNLTSKISDVLTSTVTIDDDLYDELEEILITSDIGVETSLYIIDKL 63

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K     V    ++ D + E+I  +L    K  +      P  ILVVGVNGVGKTT IG
Sbjct: 64  KEKIKENKVKDPSLVNDCLKEVIKDILGD--KKGSLMPKQIPETILVVGVNGVGKTTSIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+S ++    LKV++AA DTFR+AAIDQL++W+ R + D +  + GSD AA+ ++A + A
Sbjct: 122 KISSRLKSQNLKVIMAAADTFRAAAIDQLEVWSKRANVDIIKHQEGSDPAAVVFDAIEAA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI DTAGRLHN   LM  + K+ R++ R    +    L VLDATTGQNA+ Q 
Sbjct: 182 KARKADVLICDTAGRLHNKKNLMNELEKINRIIDREFSQSTRRTLLVLDATTGQNAVIQA 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  V    G+++TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F   DF   
Sbjct: 242 KQFMEVCKVDGIVLTKLDGTAKGGIVISIKHQLDIPVEFVGVGEGIDDLQEFNPSDFVEA 301

Query: 310 IT 311
           + 
Sbjct: 302 LF 303


>gi|323464668|gb|ADX76821.1| signal recognition particle protein [Staphylococcus
           pseudintermedius ED99]
          Length = 455

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  I    ++ +     +  E+   L+ +D+   V +  V  +  +  
Sbjct: 2   AFEGLSDRLQATMQKIKGKGKVTEADIKAMMREVRLALLEADVNFKVVKNFVNTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++   +          P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMKSLTPGQQVIKIVQEELTTLMGGDNTSITM-AKKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K +L AGD +R AAI+QL+    +                +   A + A
Sbjct: 121 LALLMRKKYNKKPLLVAGDIYRPAAINQLQTVGKQIDIPVYSEGDQVPPQQIVQNALQHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D +IIDTAGRLH +  LM  + ++  + K      P  ++ V+DA TGQ+A+   
Sbjct: 181 KAEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------PDEIMLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 ESFDQQLDVTGVTLTKLDGDTRGGAALSIRAVTEKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|212695490|ref|ZP_03303618.1| hypothetical protein ANHYDRO_00006 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325846141|ref|ZP_08169235.1| signal recognition particle protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|212677490|gb|EEB37097.1| hypothetical protein ANHYDRO_00006 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325481734|gb|EGC84769.1| signal recognition particle protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 445

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 152/304 (50%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F++ S KL++ +  +    +L     D    E++  L+ +D+   V +  ++++  +   
Sbjct: 3   FSNLSEKLQDTLGKLTGKGKLSEKDIDNAAREIKLSLLEADVNYKVVKNFIKKVKERSMG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V+E +  ++   +       S  PHV+L+VG+ G GKTT  GKL
Sbjct: 63  QDVMESLTPGQTVIKIVNEELTNLMGKENSKLELKGS-TPHVVLMVGLQGSGKTTHSGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            +K+   G   +L A D +R AAI+QLK+   +   +        D    A EA + A+ 
Sbjct: 122 VRKLKKEGRNPLLVALDVYRPAAIEQLKVVGGQAEVEVFEKG-KQDPVKTANEAKEYARR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  +  LM  +  + + +K      P  +L V+DA  GQ ++   + 
Sbjct: 181 NNNDVVIMDTAGRLQIDEDLMDELKNIKKAVK------PDEILLVVDAMVGQESVNVAKT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG ARGG  + I      P+ F+G GE ++DLE F     ++ I 
Sbjct: 235 FDDYLDITGVILTKLDGDARGGAALSIRQVVGKPIKFIGTGEKLDDLEAFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|319892235|ref|YP_004149110.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161931|gb|ADV05474.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 455

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  I    ++ +     +  E+   L+ +D+   V +  V  +  +  
Sbjct: 2   AFEGLSDRLQATMQKIKGKGKVTEADIKAMMREVRLALLEADVNFKVVKNFVNTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++   +          P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMKSLTPGQQVIKIVQEELTTLMGGDNTSITM-AKKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K +L AGD +R AAI+QL+    +                +   A + A
Sbjct: 121 LALLMRKKYNKKPLLVAGDIYRPAAINQLQTVGKQIDIPVYSEGDQVPPQQIVQNALQHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D +IIDTAGRLH +  LM  + ++  + K      P  ++ V+DA TGQ+A+   
Sbjct: 181 KAEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------PDEIMLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 ESFDQQLDVTGVTLTKLDGDTRGGAALSIRAVTEKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|260583721|ref|ZP_05851469.1| signal recognition particle-docking protein FtsY [Granulicatella
           elegans ATCC 700633]
 gi|260158347|gb|EEW93415.1| signal recognition particle-docking protein FtsY [Granulicatella
           elegans ATCC 700633]
          Length = 335

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 178/311 (57%), Gaps = 10/311 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           ++   E+   I K  +G   T     + + + ++  R +D+   ++LE+  I SD+G  +
Sbjct: 19  KQQEQETSIIIDKYDQGMQKTRKSFSDHLNEFLADFRTIDEDFFDDLEETFISSDVGFEM 78

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS------HRPHVILV 116
              I + L  +   K+        DV ++I + ++ + +    + +       RP V+L 
Sbjct: 79  TLAITDALRDEVRLKNAKNAH---DVKQVIIEKMVDIYEKGEDNLATLAKAEGRPTVLLF 135

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGK++ ++   G  V+LAAGDTFR+ AI QL+IW +R     V  + G 
Sbjct: 136 VGVNGVGKTTTIGKIAWRLKQEGHSVLLAAGDTFRAGAIQQLEIWGERVGVPVVSGKEGG 195

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D +++ Y+A K+A+A+ +D L+IDTAGRL N   LM  + KM R++ R         L V
Sbjct: 196 DPSSVVYDAIKKAKAENIDYLLIDTAGRLQNKVNLMKELEKMNRIISREIETGADETLLV 255

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL Q + F      TGLI+TK+DGTA+GG ++ I     IPV F+G+GE ++
Sbjct: 256 LDATTGQNALVQAKQFKETIDVTGLILTKLDGTAKGGVILSIRHEMNIPVKFIGLGEKMD 315

Query: 297 DLEPFVAKDFS 307
           DL+PF +  F 
Sbjct: 316 DLQPFDSTQFI 326


>gi|56708058|ref|YP_169954.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670529|ref|YP_667086.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. tularensis FSC198]
 gi|224457145|ref|ZP_03665618.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370544|ref|ZP_04986549.1| signal recognition particle protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874860|ref|ZP_05247570.1| signal recognition particle protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604550|emb|CAG45597.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320862|emb|CAL08980.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151568787|gb|EDN34441.1| signal recognition particle protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840859|gb|EET19295.1| signal recognition particle protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159253|gb|ADA78644.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 458

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/305 (32%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L +        ++   L+ +D+ + V +K +  +  K   
Sbjct: 2   FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I K L   + P N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +   A K A+
Sbjct: 121 AKYLKEQHNKKVMVVSADVYRPAAIDQLRTLANSLNVEFFKSDASQQPEDIVTAAIKTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH ++ +M  I ++ ++ K      P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|254513963|ref|ZP_05126024.1| signal recognition particle protein [gamma proteobacterium NOR5-3]
 gi|219676206|gb|EED32571.1| signal recognition particle protein [gamma proteobacterium NOR5-3]
          Length = 457

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + +  +    RL +        E+   L+ +D+ + V  + V+ +  +   
Sbjct: 2   FQNLSERLTQSLRAVTGKARLSEENIQGTLREVRMALLEADVALPVVVQFVKSVKQRALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  L  V   +  ++   ++  N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  QEVMSSLSPGQAFLKIVQAELESVMGSANEGLNL-ATQPPAVILLAGLQGAGKTTSAAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV + + D +R AAI QL+  A     DF  S +      +A  A + A+
Sbjct: 121 AKLLKERDKKKVTVVSADVYRPAAIKQLETLAAEIGVDFFPSTVDQKPVDIALAAREHAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRL  +  +MA I ++ + +       P   L V+DA TGQ+A    +
Sbjct: 181 IQFSDVLIVDTAGRLAVDEAMMAEIAELEKAVT------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+D  +RGG  + +      P+ FLGVGE    L+PF     ++ I
Sbjct: 235 AFGEALPLTGVILTKVDADSRGGAALSVRQVTGKPIKFLGVGEKTEALDPFHPDRLASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|187934489|ref|YP_001885443.1| signal recognition particle protein [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722642|gb|ACD23863.1| signal recognition particle protein [Clostridium botulinum B str.
           Eklund 17B]
          Length = 452

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F     KL+E    +    +L +  ++E + +    L+ +D+   V +  +  + +K  
Sbjct: 2   AFEGLGEKLQETFRKLKGKGKLTEKDIKEAMREVKLALLEADVNYKVVKGFISTVSSKCV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E +  ++       N+  S    VI++VG+ G GKTT+ GK
Sbjct: 62  GNEVLESLTPGQQVIKIVNEELTNLMGGSESKINYSSSGT-TVIMLVGLQGAGKTTMCGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++     K +L A D +R AAI QL+I   +            +   +A       +
Sbjct: 121 LALELRKNNKKPLLVACDVYRPAAIKQLEIVGKQIEIPVFSMGDKVNPVDIAKAGIAHGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++IIDTAGRLH +  LM  +  +   +       P  +L V+D+ TGQ+A+   E
Sbjct: 181 DNGNNIIIIDTAGRLHIDEALMQELQDIKENVN------PSEILLVVDSMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + I    + P+ ++G GE ++D E F     S+ I
Sbjct: 235 SFNKDLDVTGVILTKLDGDTRGGAALSIRSITEKPIKYIGTGEKLSDFEVFHPDRMSSRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|237736962|ref|ZP_04567443.1| cell division protein ftsY [Fusobacterium mortiferum ATCC 9817]
 gi|229420824|gb|EEO35871.1| cell division protein ftsY [Fusobacterium mortiferum ATCC 9817]
          Length = 395

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 126/310 (40%), Positives = 184/310 (59%), Gaps = 3/310 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAV 62
           ++V  E   +   L      +   L   +   I+    +DD + EELED+LI+SDIG+ +
Sbjct: 86  KEVKEEKKGFFASLKDKLFKSREGLFGTLKSFILGRSVIDDEMYEELEDILIQSDIGMDM 145

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             KIV+EL  +   + V   + +Y V  E++   L+  +   + +   + +VILVVGVNG
Sbjct: 146 TVKIVKELEKEVKRRGVKDPKEVYPVLREVMEGFLIKENNEIHIE-DGKLNVILVVGVNG 204

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ K    G KV+L AGDTFR+AAI+QL+ WA+R  A+ V S  GSD  A+
Sbjct: 205 VGKTTTIGKLASKYVKEGKKVILGAGDTFRAAAIEQLEEWANRAGAEIVKSTQGSDPGAV 264

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++    AQ++  D+ IIDTAGRLHN + LM  + K+  ++K+      +  + V+D TT
Sbjct: 265 VFDTLVAAQSRGADIAIIDTAGRLHNKNNLMKELEKIHNIIKKKLGEQKYESILVIDGTT 324

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q ++F+ V   TG I+TK+DGTA+GG +  I    K P+ F+GVGE I DL  F
Sbjct: 325 GQNALNQAKVFNEVTELTGFIITKLDGTAKGGIVFSISEEIKKPIKFIGVGEKIEDLREF 384

Query: 302 VAKDFSAVIT 311
            A ++   I 
Sbjct: 385 NANEYIQAIF 394


>gi|296135230|ref|YP_003642472.1| signal recognition particle-docking protein FtsY [Thiomonas
           intermedia K12]
 gi|295795352|gb|ADG30142.1| signal recognition particle-docking protein FtsY [Thiomonas
           intermedia K12]
          Length = 368

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 117/307 (38%), Positives = 177/307 (57%), Gaps = 7/307 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
              +  W  +L  G   T      GI+ +    ++D+ + EELE  LI +D G+     +
Sbjct: 67  EQPTSGWFNRLRSGLRKT----GSGISGLFGGSKIDEALYEELESALIMADAGMPATTAL 122

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + +L  +  +        +   +++ +  +L PL KP +      P V+++VGVNG GKT
Sbjct: 123 LADLRRRVKSARAETPAQVRGLLADALADLLSPLQKPLDIG-RQNPTVLMMVGVNGAGKT 181

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL++ +  A  KV+LAAGDTFR+AA +QL  W  R     + S+ G D AA+A++A
Sbjct: 182 TTIGKLTQHLLRADEKVLLAAGDTFRAAAREQLVAWGQRNQVQVI-SQDGGDPAAVAFDA 240

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
               +A+++DV+I+DTAGRL     LM  + K+ RV  +    APH +L V+DA  GQNA
Sbjct: 241 VSAGKAREMDVVIVDTAGRLPTQLHLMEELKKVKRVTAKAMDGAPHEILLVIDANNGQNA 300

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV  F    G TGL++TK+DG+A+GG +  I     +PVYF+GVGE ++DL+ F AK 
Sbjct: 301 LAQVRAFDDALGLTGLVITKLDGSAKGGVIAAIARERPVPVYFIGVGESLDDLQTFDAKA 360

Query: 306 FSAVITG 312
           F+  + G
Sbjct: 361 FARALVG 367


>gi|120603184|ref|YP_967584.1| signal recognition particle protein [Desulfovibrio vulgaris DP4]
 gi|120563413|gb|ABM29157.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfovibrio vulgaris DP4]
          Length = 508

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L +         +LD+        E+   L+ +D+   V +  ++ +  +   
Sbjct: 2   FDSLSDRLTQAFRKFSGQSQLDENNIQEGLREVRLALLEADVNFKVVKDFIDRVKERCLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V + + ++L   +   +   +  P VI++VG+ G GKTT   K+
Sbjct: 62  QDVLKSLTPAQQVVKVVHDELVELLGGGTTELDLRGAQ-PGVIMMVGLQGSGKTTSSAKI 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +    ++  L   D +R AAIDQL   A +    +  S        +   A   A+ 
Sbjct: 121 ANLLRKRKMRPYLVPVDVYRPAAIDQLVTLARQLDIPYYQSTPDMKPLDIVRAALADAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K+   +++DTAGRLH +  LM  +  +           P  +L V DA TGQ+A+   + 
Sbjct: 181 KQCTAVLLDTAGRLHVDEALMDELAALKATFS------PQEILFVADAMTGQDAVTVADA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+++TKMDG ARGG  + I       V ++G+GE ++D+E F     +  I 
Sbjct: 235 FNEKLGITGVVLTKMDGDARGGAALSIKSVTGASVKYVGIGEKLSDIEVFHPDRVAGRIL 294

Query: 312 GCLDY 316
           G  D 
Sbjct: 295 GMGDM 299


>gi|291563453|emb|CBL42269.1| signal recognition particle-docking protein FtsY
           [butyrate-producing bacterium SS3/4]
          Length = 311

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 177/308 (57%), Gaps = 4/308 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  +   +  +L +G   T   +  G+  I S    +DD   EELE+ LI  D+G+    
Sbjct: 1   MEEKKKGFFSRLVEGLTKTRENIVSGMDSIFSGFSAIDDDFYEELEETLIMGDMGIQTTM 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVG 123
            ++E+L      + +       +   LI  +   +      ++F HR  V+LV+GVNGVG
Sbjct: 61  AVIEDLKKNVKEQHIKDPEQCREA--LIASIRSKMDLGENAYEFEHRKSVVLVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ ++   G KV+LAA DTFR+AAIDQL  WA+R   + +  + GSD AA+ Y
Sbjct: 119 KTTSIGKLADQLKAEGKKVVLAAADTFRAAAIDQLAEWANRAGVELIAQKEGSDPAAVIY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+++  DVLI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQ
Sbjct: 179 DAISAAKSRNADVLICDTAGRLHNKKNLMEELKKINRIIDKEYPEAYRETLVVLDGTTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F   A  TG+++TK+DGTA+GG  + I     IPV ++GVGE I+DL+ F +
Sbjct: 239 NALVQARQFMEAADITGIVLTKLDGTAKGGIAVAIQSELGIPVKYVGVGEKIDDLQKFNS 298

Query: 304 KDFSAVIT 311
           +DF   + 
Sbjct: 299 EDFVKALF 306


>gi|317050690|ref|YP_004111806.1| signal recognition particle-docking protein FtsY
           [Desulfurispirillum indicum S5]
 gi|316945774|gb|ADU65250.1| signal recognition particle-docking protein FtsY
           [Desulfurispirillum indicum S5]
          Length = 353

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 124/314 (39%), Positives = 184/314 (58%), Gaps = 5/314 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59
           +  +     S     +L    + TS  L + I  ++  +  +DD   +ELE++ + +D+G
Sbjct: 29  LPTEDETVTSGGVFARLKSRLSRTSSALTQRIEALVPGKTTIDDEYLDELEEVFLSADVG 88

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           V    +I++ L+ +   + + V   +   +   I +M+   +K        +PHVILV+G
Sbjct: 89  VKTTMEIMD-LVRENVGRSLKVPGDIQPFLRREIGRMISLPAKAETEPA--KPHVILVIG 145

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL+ K    G KV+LAA DTFR+AAI+QL +WA+RT A  V  + G+D 
Sbjct: 146 VNGSGKTTTTGKLAHKFIGQGKKVVLAAADTFRAAAIEQLAMWAERTGAHIVKHQHGADP 205

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           +A+AY+A K A ++  DVL+IDTAGRLH  S LM  + K+ RV+ R  P APH    VLD
Sbjct: 206 SAVAYDATKAALSRHADVLLIDTAGRLHTKSNLMDELSKIERVIGRDIPGAPHETWLVLD 265

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            TTGQNAL Q   F      TG ++TK+D T++GG +I I+    +PV ++G+GEG+ DL
Sbjct: 266 GTTGQNALNQARQFLQSVKITGFVLTKLDSTSKGGAIIGIIRELGVPVRYIGIGEGVEDL 325

Query: 299 EPFVAKDFSAVITG 312
           + F A+ F   I G
Sbjct: 326 QEFDAESFVDAIFG 339


>gi|18406885|ref|NP_566056.1| CPFTSY; 7S RNA binding / GTP binding / nucleoside-triphosphatase/
           nucleotide binding [Arabidopsis thaliana]
 gi|13430426|gb|AAK25835.1|AF360125_1 putative signal recognition particle receptor alpha subunit
           [Arabidopsis thaliana]
 gi|4583548|emb|CAB40382.1| chloroplast FtsY homolog [Arabidopsis thaliana]
 gi|15293185|gb|AAK93703.1| putative signal recognition particle receptor alpha subunit
           [Arabidopsis thaliana]
 gi|20197210|gb|AAC28547.2| putative signal recognition particle receptor (alpha subunit)
           [Arabidopsis thaliana]
 gi|330255505|gb|AEC10599.1| fused signal recognition particle receptor [Arabidopsis thaliana]
          Length = 366

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 181/311 (58%), Gaps = 6/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL--DDGVREELEDLLIRSDIGVAVA 63
           +  ++ S + K+  GF+ T   L   I +++    L   D V +ELE+ L+ SD G  + 
Sbjct: 56  IKEKAKSDVEKVFSGFSKTRENL-AVIDELLLFWNLAETDRVLDELEEALLVSDFGPKIT 114

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
            +IVE L     +  +     + D + E + +ML   +          +P VI++VGVNG
Sbjct: 115 VRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNG 174

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT +GKL+ ++ + G KV++AAGDTFR+AA DQL+IWA+RT  + V +E   + AA 
Sbjct: 175 GGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 234

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A K+ + +  DV++ DT+GRLH N  LM  +    + + ++   AP+ +L VLD  
Sbjct: 235 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGN 294

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L Q   F+ V G TGLI+TK+DG+ARGG ++ +V    IPV F+GVGE + DL+P
Sbjct: 295 TGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQP 354

Query: 301 FVAKDFSAVIT 311
           F  + F   I 
Sbjct: 355 FDPEAFVNAIF 365


>gi|19553259|ref|NP_601261.1| signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
 gi|62390895|ref|YP_226297.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
 gi|21324828|dbj|BAB99451.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
 gi|41326234|emb|CAF20396.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
          Length = 547

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 146/318 (45%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ +    +L +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLNSALSGLRGKGKLTEADINATTREIRLALLEADVSLTVVRAFINRIKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++  +    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVIKIVNEELVQILGGETRRLSL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           SK +   G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 SKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERAGVTTFAPDPGTSIDSLEHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A+  + D++I+DTAGRL  +  LM     +   +       P  VL V+
Sbjct: 181 PVEVARAGIEEAKRTQHDIVIVDTAGRLGIDETLMTQARNIREAIN------PDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+A+   E F      TG+++TK+DG ARGG  + I      P+ F   GE ++D
Sbjct: 235 DSMIGQDAVDTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLDD 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F  +  ++ I G  D
Sbjct: 295 FDVFHPERMASRILGMGD 312


>gi|291567513|dbj|BAI89785.1| signal recognition particle protein [Arthrospira platensis NIES-39]
          Length = 470

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +E+   L+ +D+ + V +  ++E+  +   
Sbjct: 2   FDALSERLESAWKKLRGQDKITESNIQEALKEVRRALLEADVNLMVVKDFIKEVGVQAQG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+ +  V + + K++   + P   +    P ++L+ G+ G GKTT   KL
Sbjct: 62  SQVVSGVKPGQQFIKIVHDELVKVMGESNVPL-AEAQQPPTIVLMAGLQGTGKTTASAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       +L A D +R AAIDQL     + +         +D   +A +  +  +A
Sbjct: 121 ALHLQKENRSSLLVATDVYRPAAIDQLMTLGKQINVPVFELGKDADPVEIARQGIEYGKA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D +IIDTAGRL  +  +MA + ++   ++      PH  L V+DA TGQ A    + 
Sbjct: 181 QGIDTIIIDTAGRLQIDQNMMAELAQIKETVQ------PHETLLVVDAMTGQEAATLTQT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I+TKMDG +RGG  + I      P+ F+GVGE +  L+PF  +  ++ I 
Sbjct: 235 FNDRIGITGAILTKMDGDSRGGAALSIRRVSGAPIKFVGVGEKVEALQPFYPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|149183218|ref|ZP_01861664.1| signal recognition particle-docking protein FtsY [Bacillus sp.
           SG-1]
 gi|148849083|gb|EDL63287.1| signal recognition particle-docking protein FtsY [Bacillus sp.
           SG-1]
          Length = 332

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 128/321 (39%), Positives = 187/321 (58%), Gaps = 4/321 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K  S   S   K   G + T       + D+++  R++D+   EELE++LI +D+G  
Sbjct: 8   KEKFTSTPDSVTNKFKDGLSKTRDNFSSKVNDLVARYRKVDEDFFEELEEILIGADVGFD 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF-SHRPHVILVVG 118
              ++V++L  +   +++     L  V   +L+             +       VIL VG
Sbjct: 68  TVMELVDQLKFEAKRRNIQETSELQSVISEKLVEIYEGDEGASSELNIQEDTLTVILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++    + G  V+LAAGDTFR+ AIDQL++W +RT    +    GSD 
Sbjct: 128 VNGVGKTTTIGKMAHMFKEQGKNVLLAAGDTFRAGAIDQLEVWGERTGVPVIKHSEGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+AKK D+LI DTAGRL N   LM  + K+ RV++R  P APH VL VLD
Sbjct: 188 AAVIYDAVQSAKAKKADILICDTAGRLQNKVNLMNELQKVKRVIEREIPGAPHEVLLVLD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q + F      +G+++TK+DGTA+GG +I I    +IPV F+G+GE ++DL
Sbjct: 248 ATTGQNALLQAKTFKEATDVSGIVLTKLDGTAKGGIVIGIRNELQIPVKFVGLGEKVDDL 307

Query: 299 EPFVAKDFSAVITGCLDYGEE 319
           +PF A+ +   +   L   EE
Sbjct: 308 QPFDAEKYVYGLFSNLVDKEE 328


>gi|257425291|ref|ZP_05601716.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257430584|ref|ZP_05606966.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433345|ref|ZP_05609703.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436187|ref|ZP_05612234.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282914013|ref|ZP_06321800.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924058|ref|ZP_06331734.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus C101]
 gi|293510006|ref|ZP_06668714.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526593|ref|ZP_06671278.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257271748|gb|EEV03886.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257278712|gb|EEV09331.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281438|gb|EEV11575.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284469|gb|EEV14589.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314030|gb|EFB44422.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus C101]
 gi|282322081|gb|EFB52405.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|290920665|gb|EFD97728.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291466950|gb|EFF09468.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M809]
          Length = 455

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    +L +     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + K++   +   N   +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS-NKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML A D +R AAI+QL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P+ ++ V+D+ TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK------PNEIMLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 ESFDDQLDVTGVTLTKLDGDTRGGVALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|254821193|ref|ZP_05226194.1| signal recognition particle protein [Mycobacterium intracellulare
           ATCC 13950]
          Length = 518

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 143/311 (45%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D   E    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALAGLRGKGRLTDADIEATTREIRLALLEADVSLPVVRAFVTRIKDRAKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKT++ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELIGILGGQTRQLAF-AKTPPTVVMLAGLQGSGKTSLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D  R AA++QL++  +R          G    +   +    A A
Sbjct: 121 AAWLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGESPGSGPGDPVAVAAA 180

Query: 192 -------KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                  K  DV+I+DTAGRL  +  LMA    +   +       P  VL VLDA  GQ+
Sbjct: 181 GIAEANAKHFDVVIVDTAGRLGIDDELMAQAAAIRDAID------PDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   E F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVTTAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             S+ I G  D
Sbjct: 295 RMSSRILGMGD 305


>gi|268593126|ref|ZP_06127347.1| signal recognition particle protein [Providencia rettgeri DSM 1131]
 gi|291311398|gb|EFE51851.1| signal recognition particle protein [Providencia rettgeri DSM 1131]
          Length = 453

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 160/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL D+ ++E L +    L+ +D+ + V ++ ++++      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTDENIKETLREVRMALLEADVALPVVREFIQKVKENAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV+      Q  +  V   + + +   +   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  QDVNKSLTPGQEFIKIVQNELTRAMGDENHQLNLS-AQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K +L  + D +R AAI QL+  A+    DF  SE+    A +  +A K AQ
Sbjct: 121 GKLLKEKQKKKVLVVSADVYRPAAIKQLETLAESVGIDFFPSEVQEKPAVIVQKALKHAQ 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGRLH +  +M  I ++ R++K      P   L V+DA TGQ+A    +
Sbjct: 181 LQFYDVLLVDTAGRLHVDEAMMEEIQEVHRIIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF  +  ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRAITGKPIKFLGVGEKTDALEPFHPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|240146499|ref|ZP_04745100.1| signal recognition particle protein [Roseburia intestinalis L1-82]
 gi|257201355|gb|EEU99639.1| signal recognition particle protein [Roseburia intestinalis L1-82]
          Length = 448

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 153/305 (50%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++ S  RL +       +E++  L+ +D+   V ++ V+++  +  
Sbjct: 2   AFDSLSEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKQFVKDVQERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + +++   +            +I++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEEMVRLMGSETTEIALRPGKELTIIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G KV+LAA D +R AAI+QL+I  ++   +       +    +A  A + A 
Sbjct: 122 IAGKLKAKGKKVLLAACDVYRPAAIEQLQINGEKQGVEVFSMGDKNTPVNIAKAAVEHAT 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +VLIIDTAGRLH +  +MA + ++   +      A    + V+DA TGQ+A+   +
Sbjct: 182 KNDFNVLIIDTAGRLHVDEDMMAELIQIKENV------AVSQTILVVDAMTGQDAVNVAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+++TK+DG  RGG  + I      P+ + G+GE ++DLE F     ++ I
Sbjct: 236 TFDEKIGIDGVVLTKLDGDTRGGAALSIRAVTGKPILYAGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|332886339|gb|EGK06583.1| signal recognition particle protein [Dysgonomonas mossii DSM 22836]
          Length = 439

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+     +    ++ +       +++   L+ +D+    A++  E +  K   
Sbjct: 2   FESLSNRLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKTAKQFTETVKEKAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   +   +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPEQLMVKIVHDELAALMGGTATDVHLKGN--PAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +    G   +L AGD +R AAI+QLKI  ++        E   +   +A  A K A+
Sbjct: 120 AKMLKSKKGKNPLLVAGDVYRPAAIEQLKILGEQIEVPVYWEEGSKNPVQIAQNAIKHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGRL  +  +M  I  +   +K      P  +L V+D+ TGQ+A+   +
Sbjct: 180 QNGNDLVIVDTAGRLAIDEEMMKEITAIKDAVK------PDEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F  +  +  I
Sbjct: 234 EFNDRLNFDGVVLTKLDGDTRGGAALSIRSVVDKPIKFVGTGEKMDALDVFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|317405653|gb|EFV85951.1| ffh protein [Achromobacter xylosoxidans C54]
          Length = 468

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 147/317 (46%), Gaps = 28/317 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V +  V  +  K   
Sbjct: 2   LDNLTQRLSRVVKTLRGEARLTEANTQEMLREVRMALLEADVALPVVRDFVARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++       + + S     P VIL+ G+ G GKTT  
Sbjct: 62  EEVAGSLSPGQALVGVVHKELTALMGGDLGADSGELSLAVQPPAVILMAGLQGAGKTTTT 121

Query: 129 GKLSKKM----------SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GKL++ +               KV++ + D +R AAIDQLK  A +   DF+ S+     
Sbjct: 122 GKLARWLSEGQHTQHGRKTGKKKVLVVSADVYRPAAIDQLKSVAAQVGVDFLPSDPSQKP 181

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A  A   A+    DVLI+DTAGRL  +  +M  I  +  ++K      P   L V+D
Sbjct: 182 EDIARNAVDHARRHHYDVLILDTAGRLGIDEAMMREIRALHDLVK------PVETLFVVD 235

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+     F      TG+++TK+DG ARGG  + +      P+ F+GV E ++ L
Sbjct: 236 AMQGQDAVNTARAFAEALPLTGVVLTKLDGDARGGAALSVRHVTGKPLKFVGVSEKLDGL 295

Query: 299 EPFVAKDFSAVITGCLD 315
           EPF  +  +  + G  D
Sbjct: 296 EPFYPERMAQRVLGMGD 312


>gi|313115226|ref|ZP_07800709.1| signal recognition particle protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622455|gb|EFQ05927.1| signal recognition particle protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 451

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 141/305 (46%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L      +    +L +   +    E+   L+ +D+   VA+    ++  +  
Sbjct: 2   AFESLTDRLAGVFKKLRGHGKLTEADIKAAMREVRMALLEADVNYKVAKDFCAKVSERAM 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E +  ++           +    +I++ G+ G GKTT   K
Sbjct: 62  GQEVMESLTPAQQVVKIVNEELVALMGGSEAARLNIKNKGQTIIMLCGLQGNGKTTHAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K     G + ML A D +R AAIDQL++   +  A       G+    +A +A   A+
Sbjct: 122 LAKYFIKQGRRPMLVACDIYRPAAIDQLQVVGKQAGAPVFTL-PGAKPPEIAKKALAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGRL  + +LM  +  +   +           L V+DA  GQ+A+   +
Sbjct: 181 DYGNDIVILDTAGRLQIDDVLMQELVDIKEAVP------VDETLLVVDAMAGQDAVNVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK DG  RGG  + ++     P+ F G GE ++DL+ F     ++ I
Sbjct: 235 TFNEKVGIDGIILTKTDGDTRGGAALSVLAVTGKPIKFQGTGEKLDDLDVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|311739736|ref|ZP_07713571.1| signal recognition particle protein [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305552|gb|EFQ81620.1| signal recognition particle protein [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 549

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 150/319 (47%), Gaps = 30/319 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+  +  +    +L +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FDSLSDRLQSALAGLRGKGKLTEADINATAREIRLALLEADVSLTVVRGFIKRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPAQQVVKIVNEELIEILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           +K ++  G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 AKHLAKQGHTPMLVACDLQRPGAVQQLQIVGERAEVPTFAPDPGTSLDSNEHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A +   +A+ K+ DV+IIDTAGRL  +  LM     +       D   P  VL V+
Sbjct: 181 PVDVAKQGIAEAKQKQHDVVIIDTAGRLGIDETLMTQARNI------RDAVNPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+A++  E F      TG+++TK+DG ARGG  + I      P+ +   GE ++D
Sbjct: 235 DSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMYASTGEKLDD 294

Query: 298 LEPFVAKDFSAVITGCLDY 316
            + F  +  S+ I G  D 
Sbjct: 295 FDVFHPERMSSRILGMGDL 313


>gi|147678072|ref|YP_001212287.1| signal recognition particle GTPase [Pelotomaculum thermopropionicum
           SI]
 gi|146274169|dbj|BAF59918.1| signal recognition particle GTPase [Pelotomaculum thermopropionicum
           SI]
          Length = 303

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 137/303 (45%), Positives = 192/303 (63%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +  A T     E I +++  RR +D+ + EELE+LL+++D+GV  A  +VE 
Sbjct: 1   MGFFNRLKESLAKTRQSFVEKIDNLVHRRRAIDEELYEELEELLVQADVGVNTAADLVER 60

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +      + V     L   + E I +ML   S P N+  S  P VI+VVGVNGVGKTT I
Sbjct: 61  VRRTVRERRVEEAGELKNILKEHIMEMLEGDSAPVNFS-SVPPTVIMVVGVNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G KV+L A DTFR+AAIDQL+IWA R   + +    G+D AA+A+++ + 
Sbjct: 120 GKLAYYYKSQGKKVLLGAADTFRAAAIDQLEIWAGRAGVELIKHREGADPAAVAFDSLQA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A++ D+LIIDTAGRLH  S LM  + K+ RVL R  P APH VL VLDATTGQNA+ Q
Sbjct: 180 AKARRADLLIIDTAGRLHTKSNLMEELKKVGRVLDRAMPGAPHEVLLVLDATTGQNAINQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F    G TG+ +TK+DG+A+GG +I I  +  IPV  +G+GEGI+DL PF A++F  
Sbjct: 240 TRLFGEAVGVTGIALTKLDGSAKGGVVIAIKQSLDIPVKMIGIGEGIDDLRPFNAREFVD 299

Query: 309 VIT 311
            + 
Sbjct: 300 ALF 302


>gi|225180938|ref|ZP_03734386.1| signal recognition particle protein [Dethiobacter alkaliphilus AHT
           1]
 gi|225168419|gb|EEG77222.1| signal recognition particle protein [Dethiobacter alkaliphilus AHT
           1]
          Length = 448

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 148/304 (48%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL++ +  +    +L +        E+   L+ +D+   V +  V+ +  +   
Sbjct: 3   FENLSTKLQDTLKRLRGKGKLTEKDVDVALREVRLALLEADVNFKVVKDFVKTVKERCLG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V++ + K++       N   S  P VI++VG+ G GKTT   KL
Sbjct: 63  AEVLESLTPGQQVIKIVNDELTKLMGESVAKLNQS-SAPPTVIMMVGLQGSGKTTSAAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S  +       +L A D +R AAI QL++  ++            D    A  A +QA+ 
Sbjct: 122 SNLLKKKQHSPLLVAADIYRPAAIKQLQVLGEQLEVPVYQMG-QQDPVQTAKAALEQAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            + D +IIDTAGRLH +  LMA + ++ + +       P  +L V+DA TGQ+A+   + 
Sbjct: 181 NRNDYVIIDTAGRLHIDEELMAELTRIEKAVN------PDEILLVVDAMTGQDAVNVAQS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G +G+++TK+DG  RGG  + +      PV F G+GE  +  EPF  +  ++ I 
Sbjct: 235 FKEKLGLSGVVLTKLDGDTRGGAALSVRAVTGCPVKFAGLGEKTDAFEPFYPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|251797474|ref|YP_003012205.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           JDR-2]
 gi|247545100|gb|ACT02119.1| signal recognition particle-docking protein FtsY [Paenibacillus sp.
           JDR-2]
          Length = 332

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 130/321 (40%), Positives = 194/321 (60%), Gaps = 3/321 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            + +AS++ +      +G   T + L E + ++I+  +++D+   EELE++LI +D+GV 
Sbjct: 8   KESIASKTEAVTTIFKEGLTKTRVALVEKVEELITRRKKIDEEFYEELEEILIGADVGVN 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               +++EL  +   + +     L   +SE +  +L     P          VIL VGVN
Sbjct: 68  TVMTLIDELRAEVKKRKIEQAAELQPILSEKLIGLLKGEQNPGLQMAKSGITVILFVGVN 127

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ K    G  V+LAAGDTFR+AAI+QL++W  R   D +  + GSD AA
Sbjct: 128 GVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAAAIEQLEVWGQRVGVDVIKQQSGSDPAA 187

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+ + VDVL+ DTAGRL N S LM  + K+ RV++R  P APH VL VLDAT
Sbjct: 188 VMFDAVQAAKQRGVDVLLCDTAGRLQNKSNLMEELNKIFRVIQREIPDAPHEVLLVLDAT 247

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q ++F   +G TGL++TK+DGTA+GG +I I     +PV  +G+GE + DL+ 
Sbjct: 248 TGQNALSQAKLFGEKSGVTGLVLTKLDGTAKGGIVIAIRNELNLPVKLVGLGEKMTDLQE 307

Query: 301 FVAKDFSAVIT-GCLDYGEEK 320
           F +  F   +  G +   EE+
Sbjct: 308 FDSVQFVHALFAGLIQREEEQ 328


>gi|225022019|ref|ZP_03711211.1| hypothetical protein CORMATOL_02051 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681063|ref|ZP_07403870.1| signal recognition particle protein [Corynebacterium matruchotii
           ATCC 14266]
 gi|224945216|gb|EEG26425.1| hypothetical protein CORMATOL_02051 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659268|gb|EFM48768.1| signal recognition particle protein [Corynebacterium matruchotii
           ATCC 14266]
          Length = 538

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 144/318 (45%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ + S  ++ +     V  E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FESLSDRLSAALSGLRSKGKVTEADVNTVSREIRLALLEADVSLPVVRGFIKRIKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      ++V+  V+E +  +L   ++  N      P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSKALNPAEQVIKIVNEELTTILGGETRRMNVS-KKPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           +  + + G   +L A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 AYSLKEQGHTPILVACDLQRPGAVQQLQIVGERAGVPTFAPDPGTSLDTLEHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+A     +A+ KK D +I+DTAGRL  +  LM     +   ++      P  V  V+
Sbjct: 181 PVAVARAGVAEARQKKHDYVIVDTAGRLGIDETLMTQARNIRDAIQ------PDEVFFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F      TG+++TK+DG ARGG  + I      P+ F   GE + D
Sbjct: 235 DAMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKMTD 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     +  I G  D
Sbjct: 295 FDVFHPDRMANRILGMGD 312


>gi|145220378|ref|YP_001131087.1| signal recognition particle-docking protein FtsY [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206542|gb|ABP37585.1| signal recognition particle-docking protein FtsY [Chlorobium
           phaeovibrioides DSM 265]
          Length = 317

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 123/305 (40%), Positives = 184/305 (60%), Gaps = 6/305 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + +LT+G   T   L+E +  +   R  +DD   EELE++L+ +D+GV     IV+ +  
Sbjct: 9   LSRLTEGLGKTRETLREKLAVVTKGRTEIDDEFLEELENILVSADVGVETTLAIVDAITE 68

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTV 127
           +   +    +  L   + + I KMLM   +     F+     +P+VIL+VGVNG GKTT 
Sbjct: 69  RAGTESYRSEDELNGMLMDEIGKMLMESGEEHPVEFDAPLPAKPYVILIVGVNGAGKTTS 128

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           + KL+     AG KVM+AA DTFR+AA +QL++WA+R     +    G+D A++ ++A  
Sbjct: 129 VAKLASNYEKAGKKVMIAAADTFRAAAYEQLQVWAERAGVPLIGQGQGADPASVVFDAVS 188

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A+  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQNA++
Sbjct: 189 AAVARNADVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQNAVQ 248

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F      TG+++TK+DGTA+GG ++ I    K+PV ++GVGE I+DL+ F    F 
Sbjct: 249 QAREFMKFVHVTGIVVTKLDGTAKGGIVLSISRELKLPVKYIGVGEKIDDLQLFDRSRFV 308

Query: 308 AVITG 312
             + G
Sbjct: 309 GALLG 313


>gi|295103451|emb|CBL00995.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Faecalibacterium prausnitzii SL3/3]
          Length = 451

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 141/305 (46%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L      +    +L +   +    E+   L+ +D+   VA+    ++  +  
Sbjct: 2   AFESLTDRLAGVFKKLRGHGKLTEADIKAAMREVRMALLEADVNYKVAKDFCAKVSERAM 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E +  ++           +    VI++ G+ G GKTT   K
Sbjct: 62  GQEVMESLTPAQQVVKIVNEELVALMGGSEAARLNIKNKGQTVIMLCGLQGNGKTTHAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K     G + ML A D +R AAIDQL++   +  A       G+    +A +A   A+
Sbjct: 122 LAKFYIKQGRRPMLVACDIYRPAAIDQLQVVGKQAGAPVFTL-PGAKPPEIARKALAHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGRL  + +LM  +  +   +           L V+DA  GQ+A+   +
Sbjct: 181 DYGNDIIILDTAGRLQIDEVLMQELVDIKAAVP------VDETLLVVDAMAGQDAVNVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK DG  RGG  + ++     P+ F G GE ++DL+ F     ++ I
Sbjct: 235 TFNETVGVDGIILTKTDGDTRGGAALSVLAVTGKPIKFQGTGEKLDDLDVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|229061450|ref|ZP_04198795.1| Cell division protein ftsY [Bacillus cereus AH603]
 gi|229134655|ref|ZP_04263464.1| Cell division protein ftsY [Bacillus cereus BDRD-ST196]
 gi|229168586|ref|ZP_04296309.1| Cell division protein ftsY [Bacillus cereus AH621]
 gi|228614992|gb|EEK72094.1| Cell division protein ftsY [Bacillus cereus AH621]
 gi|228648701|gb|EEL04727.1| Cell division protein ftsY [Bacillus cereus BDRD-ST196]
 gi|228717873|gb|EEL69521.1| Cell division protein ftsY [Bacillus cereus AH603]
          Length = 332

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 187/310 (60%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV+
Sbjct: 11  KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKIDEDFFEELEEILISADVGVS 70

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   + +  V       I+K     S   N        V+L V
Sbjct: 71  TVMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSDFSNEVNIQEDQ-LTVVLFV 129

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 130 GVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 189

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 190 PAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMNELEKVKRVIEREVPGAPHEVLLVI 249

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 250 DATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDD 309

Query: 298 LEPFVAKDFS 307
           L+ F  + + 
Sbjct: 310 LQQFDPEQYV 319


>gi|227544365|ref|ZP_03974414.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri CF48-3A]
 gi|300909774|ref|ZP_07127235.1| cell division protein FtsY [Lactobacillus reuteri SD2112]
 gi|227185628|gb|EEI65699.1| signal recognition particle-docking protein FtsY [Lactobacillus
           reuteri CF48-3A]
 gi|300893639|gb|EFK86998.1| cell division protein FtsY [Lactobacillus reuteri SD2112]
          Length = 507

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 180/311 (57%), Gaps = 5/311 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S +    +    ++K  +G   +       +   +++ R +D+   ++LED+LI SD+G 
Sbjct: 186 SPEPEEDQESETVKKYDRGLEKSRTGFGARLNKFLANFRHVDEDFFDDLEDMLIESDVGY 245

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDF---SHRPHVILV 116
            +A K+ +EL  +   ++   ++ + +V  E + ++     +  N D       P VI+ 
Sbjct: 246 DMAMKLSDELREEVKLQNAKSKQDVSNVIIEKMVELYDEAGQDENPDLTMTKEGPTVIMF 305

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT IGK++      G KV+LAA DTFR+ A +QL +WA R   D V      
Sbjct: 306 VGVNGAGKTTTIGKMAALFKKQGKKVLLAAADTFRAGATEQLDVWAKRDGVDIVTGPENG 365

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A K+A+ +  D+L +DTAGRL N   LM  + KM R+L R  P APH VL V
Sbjct: 366 DPAAVVFDAVKRAKDENYDILFVDTAGRLQNKVNLMNELAKMKRILTREIPDAPHEVLLV 425

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL Q ++F      TG+++TK+DGTARGG ++ I     +PV ++G+GE ++
Sbjct: 426 LDATTGQNALNQAKLFKESTDVTGIVLTKLDGTARGGIVLAIRNELHLPVKYVGLGEKVD 485

Query: 297 DLEPFVAKDFS 307
           DL+ F A DF 
Sbjct: 486 DLQKFDAGDFV 496


>gi|18310695|ref|NP_562629.1| signal recognition particle protein [Clostridium perfringens str.
           13]
 gi|110800465|ref|YP_696400.1| signal recognition particle protein [Clostridium perfringens ATCC
           13124]
 gi|110802935|ref|YP_699000.1| signal recognition particle protein [Clostridium perfringens SM101]
 gi|168207936|ref|ZP_02633941.1| signal recognition particle protein [Clostridium perfringens E str.
           JGS1987]
 gi|168210654|ref|ZP_02636279.1| signal recognition particle protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214190|ref|ZP_02639815.1| signal recognition particle protein [Clostridium perfringens CPE
           str. F4969]
 gi|182625861|ref|ZP_02953627.1| signal recognition particle protein [Clostridium perfringens D str.
           JGS1721]
 gi|18145376|dbj|BAB81419.1| signal recognition particle protein [Clostridium perfringens str.
           13]
 gi|110675112|gb|ABG84099.1| signal recognition particle protein [Clostridium perfringens ATCC
           13124]
 gi|110683436|gb|ABG86806.1| signal recognition particle protein [Clostridium perfringens SM101]
 gi|170660749|gb|EDT13432.1| signal recognition particle protein [Clostridium perfringens E str.
           JGS1987]
 gi|170711297|gb|EDT23479.1| signal recognition particle protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714291|gb|EDT26473.1| signal recognition particle protein [Clostridium perfringens CPE
           str. F4969]
 gi|177908895|gb|EDT71387.1| signal recognition particle protein [Clostridium perfringens D str.
           JGS1721]
          Length = 452

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 143/284 (50%), Gaps = 13/284 (4%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSEL 91
           + + + + +RE ++  L+ +D+   V +K +  +  K   ++V       Q+V+  V++ 
Sbjct: 24  TEKDIKEAMRE-VKLALLEADVNFKVVKKFISNVKDKCVGEEVLNSLTPGQQVIKIVNDE 82

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +  ++        +   + P V ++VG+ G GKTT+ GKL+  +     K +L A D +R
Sbjct: 83  LTTLMGETESKLKYS-DNGPTVFMLVGLQGAGKTTMAGKLALHLRKKNKKPLLVACDIYR 141

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            AAI QL++   +             A  +A  A + A+    +V+IIDTAGRLH +  L
Sbjct: 142 PAAIKQLQVVGKQIDIPVFSMGDKVKAVDIAKAAIEHAKDNGNNVVIIDTAGRLHIDEDL 201

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  +  +  V        P  +L V+DA TGQ+A+   E F+     +G+I+TK+DG  R
Sbjct: 202 MQELKDVKEVSN------PSEILLVVDAMTGQDAVNVAETFNNSLDLSGIILTKLDGDTR 255

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG  + I      P+ F+GVGE ++D+E F     ++ I G  D
Sbjct: 256 GGAALSIRDITGKPIKFVGVGEKMSDIEVFHPDRMASRILGMGD 299


>gi|88797967|ref|ZP_01113554.1| signal recognition particle protein [Reinekea sp. MED297]
 gi|88779164|gb|EAR10352.1| signal recognition particle protein [Reinekea sp. MED297]
          Length = 473

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L + +  I    +L +        E+   L+ +D+ + V +  ++ + T+   
Sbjct: 2   FNSLSERLGQTLKQITGQAKLTEDNIKSSLREVRMALLEADVALPVVKAFIDAVKTRAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+ L  V   +  ++   ++  +   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  QEVSQALNPGQQFLKIVQSELVHVMGEQNEALDLK-TQPPAVILMAGLQGAGKTTTTAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           S+ +S     KVM+ + D +R AAI QL+  A    A F  S++     A+   A   A+
Sbjct: 121 SRFLSEREKKKVMVVSADVYRPAAIKQLETLAGEVGALFHPSDVAQKPEAIVKGAIDAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VDVLI+DTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 KQAVDVLIVDTAGRLAVDEAMMAEIQTLHKAVN------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG++++K DG +RGG  + +      P+ F+G+GE ++ LEPF     ++ I
Sbjct: 235 AFSDALPLTGVVLSKADGDSRGGAALSVRHITGKPIKFMGMGEKVDALEPFYPDRIASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|227549002|ref|ZP_03979051.1| signal recognition particle protein [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078912|gb|EEI16875.1| signal recognition particle protein [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 546

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/318 (28%), Positives = 142/318 (44%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+  +  +    +L +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FESLSDRLQTALGGLRGKGKLTEADINNTAREIRLALLEADVSLTVVRAFIKRVKERSLG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DVS      Q+V+  V E +  +L   ++  N      P VI++ G+ G GKTT+ GKL
Sbjct: 62  ADVSEALNPAQQVIKIVDEELTNILGGETRRLNL-AKTPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           +  ++  G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 ANHLTKQGHTPMLVACDLQRPGAVQQLQIVGERAGVPTFAPDPGTSLDSLDHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+A    + A   K DV+IIDTAGRL  +  LM     +       D   P  VL V+
Sbjct: 181 PVAVATAGIEHAVRAKNDVVIIDTAGRLGIDETLMTQARNI------RDAVNPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   + F      TG+++TK+DG ARGG  + I      P+ F   GE ++D
Sbjct: 235 DAMIGQDAVATAQAFADGVDFTGVVLTKLDGDARGGAALSIREVTGKPILFASTGEKLDD 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     S+ I G  D
Sbjct: 295 FDIFHPDRMSSRILGMGD 312


>gi|169342711|ref|ZP_02863752.1| signal recognition particle protein [Clostridium perfringens C str.
           JGS1495]
 gi|169299217|gb|EDS81287.1| signal recognition particle protein [Clostridium perfringens C str.
           JGS1495]
          Length = 452

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 143/284 (50%), Gaps = 13/284 (4%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSEL 91
           + + + + +RE ++  L+ +D+   V +K +  +  K   ++V       Q+V+  V++ 
Sbjct: 24  TEKDIKEAMRE-VKLALLEADVNFKVVKKFISNVKDKCVGEEVLNSLTPGQQVIKIVNDE 82

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +  ++        +   + P V ++VG+ G GKTT+ GKL+  +     K +L A D +R
Sbjct: 83  LTTLMGETESKLKYS-DNGPTVFMLVGLQGAGKTTMAGKLALHLRKKNKKPLLVACDIYR 141

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            AAI QL++   +             A  +A  A + A+    +V+IIDTAGRLH +  L
Sbjct: 142 PAAIKQLQVVGKQIDIPVFSMGDKVKAVDIAKAAIEHAKDNGNNVVIIDTAGRLHIDEDL 201

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  +  +  V        P  +L V+DA TGQ+A+   E F+     +G+I+TK+DG  R
Sbjct: 202 MQELKDVKEVSN------PSEILLVVDAMTGQDAVNVAETFNNSLDLSGIILTKLDGDTR 255

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG  + I      P+ F+GVGE ++D+E F     ++ I G  D
Sbjct: 256 GGAALSIRDITGKPIKFVGVGEKMSDIEVFHPDRMASRILGMGD 299


>gi|302386490|ref|YP_003822312.1| signal recognition particle protein [Clostridium saccharolyticum
           WM1]
 gi|302197118|gb|ADL04689.1| signal recognition particle protein [Clostridium saccharolyticum
           WM1]
          Length = 449

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+     +    RL +       +E++  L+ +D+   V ++ +  +  +  
Sbjct: 2   AFESLSDKLQNVFKSLRGKGRLSEADVKTALKEVKMALLEADVSFKVVKQFISAVQERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +       +    +I++ G+ G GKTT   K
Sbjct: 62  GQDVQNSLTPGQMVIKIVNEELVKLMGSETTEIRLKPAGDMTIIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G K +L A D +R AAI QL+I  ++              A +A  A   A 
Sbjct: 122 IAGKLKAKGRKPLLVACDVYRPAAIKQLQINGEKQGVPVFSMGENHKPADIAKAAIAYAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRLH +  +M  + ++   ++       H  + V+DA TGQ+A+    
Sbjct: 182 KNDQNVVILDTAGRLHIDEDMMNELIEIKGTVE------VHQTILVVDAMTGQDAVNVAG 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           MF+   G  G+I+TK+DG  RGG  + I      PV ++G+GE ++DLE F     ++ I
Sbjct: 236 MFNDKIGIDGVIITKLDGDTRGGAALSIRAVTGKPVLYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|284007749|emb|CBA73571.1| signal recognition particle protein [Arsenophonus nasoniae]
          Length = 453

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ ++ +      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNIKETLREVRMALLEADVALPVVREFIQSVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV+      Q  +  V   + K +   +   N      P VIL+ G+ G GKTT + KL
Sbjct: 62  QDVNKSLTPGQEFVKIVQNELTKAMGEENSALNLAI-QPPAVILMAGLQGAGKTTTVAKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K +L  + D +R AAI QL+        DF  S        +A  A + A+
Sbjct: 121 GKLLKEKQKKKVLVVSADIYRPAAIKQLETLTQTVGIDFFPSTSSEKPVEIATNALQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLIIDTAGRLH +  +M  I  + R +       P   L ++DA TGQ+A    +
Sbjct: 181 LKFYDVLIIDTAGRLHVDEAMMEEIQAIHRAIN------PIETLFIVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLG+GE I  LEPF     ++ I
Sbjct: 235 SFNETLPLTGVILTKIDGDARGGAALSIRHITGKPIKFLGIGEKIEGLEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|257427951|ref|ZP_05604349.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|293501045|ref|ZP_06666896.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|257274792|gb|EEV06279.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|291096050|gb|EFE26311.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 58-424]
          Length = 455

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    +L +     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + K++   +   N   +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS-NKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML A D +R AAI+QL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P+ ++ V+D+ TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAK------PNEIMLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 ESFDDQLDVTGVTLTKLDGDTRGGVALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|119488999|ref|ZP_01621934.1| Signal recognition particle protein [Lyngbya sp. PCC 8106]
 gi|119454955|gb|EAW36098.1| Signal recognition particle protein [Lyngbya sp. PCC 8106]
          Length = 480

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L      +    ++ +       +++   L+ +D+ + V ++ V E+  +   
Sbjct: 2   FDALAERLDSAWKKLRGQDKITESNIQDALKDVRRALLEADVNLQVVKEFVAEVGEQAQG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       ++ +  V + + K++   + P        P ++L+ G+ G GKTT   KL
Sbjct: 62  SQVFSGVRPGEQFVKIVHDELVKVMGESNVPLAT-ADSPPTIVLMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       ++ A D +R AAIDQLK    +           +D   +A +  + A+ 
Sbjct: 121 ALHLRKENRTALMVATDVYRPAAIDQLKTLGQQIEVPVFELGSDADPVEIARQGVEYAKT 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VD +IIDTAGRL  +  +MA + ++  V++      PH  L V+DA TGQ A    + 
Sbjct: 181 QGVDTVIIDTAGRLQIDQDMMAELARIKAVVQ------PHDTLLVVDAMTGQEAATLTQT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G +G I+TK+DG +RGG  + I      P+ F+GVGE +  L+PF  +  ++ I 
Sbjct: 235 FNEQIGISGAILTKLDGDSRGGAALSIRRISGAPIKFVGVGEKVEALQPFYPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|323484227|ref|ZP_08089596.1| hypothetical protein HMPREF9474_01347 [Clostridium symbiosum
           WAL-14163]
 gi|323692110|ref|ZP_08106356.1| signal recognition particle-docking protein FtsY [Clostridium
           symbiosum WAL-14673]
 gi|323402469|gb|EGA94798.1| hypothetical protein HMPREF9474_01347 [Clostridium symbiosum
           WAL-14163]
 gi|323503833|gb|EGB19649.1| signal recognition particle-docking protein FtsY [Clostridium
           symbiosum WAL-14673]
          Length = 314

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 179/308 (58%), Gaps = 4/308 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++     +  +L +G   T   +  GI  I S    +DD   EE+E+ LI  D+G+    
Sbjct: 1   MSEGKKGFFGRLVEGLTKTRNSIVSGIDSIFSGFSAIDDDFYEEIEETLIMGDLGIQTTM 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVG 123
            IVE+L  K     +       D+  L+  +   +      ++F  +  V+LV+GVNGVG
Sbjct: 61  SIVEDLRRKVKENHIKEPSECKDL--LVASIKSQMDLGENAYEFERQKSVVLVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ ++ D G KV+LAA DTFR+AAI+QL  W++R   + +  + GSD AA+ +
Sbjct: 119 KTTSVGKLAGQLKDQGKKVILAAADTFRAAAIEQLTEWSNRAGVELIAQQEGSDPAAVIF 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+++  DVLI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQ
Sbjct: 179 DAIAAAKSRNADVLICDTAGRLHNKKNLMEELKKINRIIDKEYPDAYRETLVVLDGTTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F  VA  TG+I+TK+DGTA+GG  + I     IPV ++G+GE I+DL+ F A
Sbjct: 239 NALSQAKQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYVGIGEKIDDLQKFDA 298

Query: 304 KDFSAVIT 311
            DF   + 
Sbjct: 299 NDFVNALF 306


>gi|242373529|ref|ZP_04819103.1| signal recognition particle protein Ffh [Staphylococcus epidermidis
           M23864:W1]
 gi|242348892|gb|EES40494.1| signal recognition particle protein Ffh [Staphylococcus epidermidis
           M23864:W1]
          Length = 455

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    ++ +     +  E+   L+ +D+   V ++ V+ +  +  
Sbjct: 2   AFEGLSERLQSTMQKMRGKGKVTEADIKTMMREVRLALLEADVNFKVVKEFVKTVSDRAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++   +       +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQEELTSLMGGENTSIKM-ANKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML AGD +R AAIDQL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQIDIPVYSEGDQVPPQQIVENALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P  ++ V+DA TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------PDEIMLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      +G+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 QSFDDQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|183597522|ref|ZP_02959015.1| hypothetical protein PROSTU_00796 [Providencia stuartii ATCC 25827]
 gi|188023168|gb|EDU61208.1| hypothetical protein PROSTU_00796 [Providencia stuartii ATCC 25827]
          Length = 453

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL D        E+   L+ +D+ + V ++ ++++      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVREFIQKVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV+      Q  +  V   + + +   +   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  QDVNKSLTPGQEFIKIVQNELTRAMGEENHQLNLS-AQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K +L  + D +R AAI QL+  A+    DF  S++    AA+  +A K AQ
Sbjct: 121 GKLLKEKQKKKVLVVSADVYRPAAIKQLETLAETVGIDFFPSDVKEKPAAIVQKALKHAQ 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGRLH +  +M  I ++ R++K      P   L V+DA TGQ+A    +
Sbjct: 181 LQFYDVLLVDTAGRLHVDEAMMEEIQEVHRIIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF  +  ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRAITGKPIKFLGVGEKTDALEPFHPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|326798855|ref|YP_004316674.1| signal recognition particle protein [Sphingobacterium sp. 21]
 gi|326549619|gb|ADZ78004.1| signal recognition particle protein [Sphingobacterium sp. 21]
          Length = 446

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   KL      +     + +       +E+   L+ +D+    A+   +E+  K   
Sbjct: 2   FDSLQDKLDRAFKVLKGQGNITEINVAETVKEIRKALLDADVNYKTAKAFTDEVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q +   +++ + +++   +   + +    P VIL+ G+NG GKTT  GKL
Sbjct: 62  ENVLTSISPGQLLTKIMNDELTQLMGGTAT--DLELGKNPTVILIAGLNGAGKTTFTGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +  G K +L AGD +R AAIDQL++ A +       +    D  A+A E    A+
Sbjct: 120 AKYLKEKRGKKPLLVAGDVYRPAAIDQLEVLAQQVDVPVYTNRESKDPIAIAEEGVAAAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRL  +  LM  I  +           PH +L V+D+ TGQ+A+   +
Sbjct: 180 RNGQNVVIVDTAGRLAIDEALMNEISAVKEATN------PHEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+     TG+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F     ++ I
Sbjct: 234 VFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVNKPIKFIGTGEKMDALDVFHPDRMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|257454123|ref|ZP_05619396.1| signal recognition particle protein [Enhydrobacter aerosaccus SK60]
 gi|257448451|gb|EEV23421.1| signal recognition particle protein [Enhydrobacter aerosaccus SK60]
          Length = 488

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  I  + +L +        E+   L+ +D+ + V +  V  +  K   
Sbjct: 2   FETLTERLSTSLRSISGTGQLTEDNIKDTLREVRMALLEADVALPVTRDFVSRVKDKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + + +M+   ++         P V L+ G+ G GKTT  GKL
Sbjct: 62  QEVLKELAPGQAFVKIVYDELTEMMGSANQSLEM-TGKPPVVYLLAGLQGAGKTTTAGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KVML + D +R AAI QL+  A++  A FV S    +   +A  A +QA+
Sbjct: 121 AKYLQERQKKKVMLVSADVYRPAAIKQLEQVAEQVKASFVPSSADQNPIDIAKRAIEQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D+LIIDTAGRLH +  +M  I  +   +       P   L V+D+ TGQ+A    +
Sbjct: 181 VQFQDILIIDTAGRLHIDEAMMDEIKALTAAVT------PSETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG GE ++ LEPF  +  +  I
Sbjct: 235 AFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLDALEPFHPERVAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|21223941|ref|NP_629720.1| signal recognition particle protein [Streptomyces coelicolor A3(2)]
 gi|3191979|emb|CAA19378.1| signal recognition particle protein [Streptomyces coelicolor A3(2)]
          Length = 550

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +   +    E+   L+ +D+ + V +  ++++  +   
Sbjct: 36  FDTLSDRLSATFKSLRGKGRLTEADIDATAREIRIALLEADVALPVVRAFIKKVKERSLG 95

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+VL  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 96  AEVSKALNPAQQVLKIVNEELVGILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 154

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              + + G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 155 GHWLKEQGHSPLLVACDLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEF 214

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  D++I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 215 AKAKVHDLVIVDTAGRLGIDQELMQQAADI------RDAVSPDEILFVVDAMIGQDAVNT 268

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I      P+ F   GE ++D + F     ++
Sbjct: 269 AEAFRDGVGFDGVVLSKLDGDARGGAALSIASVTGKPIMFASNGEKLDDFDAFHPDRMAS 328

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 329 RILDMGDL 336


>gi|255325261|ref|ZP_05366367.1| signal recognition particle protein [Corynebacterium
           tuberculostearicum SK141]
 gi|255297826|gb|EET77137.1| signal recognition particle protein [Corynebacterium
           tuberculostearicum SK141]
          Length = 549

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 149/319 (46%), Gaps = 30/319 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+  +  +    +L +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FDSLSDRLQSALAGLRGKGKLTEADINATAREIRLALLEADVSLTVVRGFIKRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPAQQVVKIVNEELIEILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           +K ++  G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 AKHLAKQGHTPMLVACDLQRPGAVQQLQIVGERAEVPTFAPDPGTSLDSNEHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A     +A+ K+ DV+IIDTAGRL  +  LM     +       D   P  VL V+
Sbjct: 181 PVDVAKRGIAEAKQKQHDVVIIDTAGRLGIDETLMTQARNI------RDAVNPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+A++  E F      TG+++TK+DG ARGG  + I      P+ +   GE ++D
Sbjct: 235 DSMIGQDAVQTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMYASTGEKLDD 294

Query: 298 LEPFVAKDFSAVITGCLDY 316
            + F  +  S+ I G  D 
Sbjct: 295 FDVFHPERMSSRILGMGDL 313


>gi|291288184|ref|YP_003505000.1| signal recognition particle protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885344|gb|ADD69044.1| signal recognition particle protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 450

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 145/306 (47%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + KL    + +    R+DD       +++   L+ +D+   V +  +  +  K   
Sbjct: 2   FTTLNDKLNAVFSKLKKQVRIDDENINEALKQVRMALLEADVNFKVVKTFINNVREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLS-KPFNWDF-SHRPHVILVVGVNGVGKTTVIG 129
           ++V       Q  +  V++ +  +L     K       S+ P VI++ G+ G GKTT  G
Sbjct: 62  EEVRKSLTPDQVFIKIVNDELVDILGGKDYKEAKIKLNSNPPTVIMMAGLQGSGKTTSAG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+         V+L AGD +R AAIDQL+    +   D        DA  +A +A   A
Sbjct: 122 KLANFFMKQSKSVLLVAGDIYRPAAIDQLETLGRQLGCDVYSDRESKDAVKIAKDALAHA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D+LIIDTAGRLH +  LM  I +    +       P  VL V DA TGQ+A+   
Sbjct: 182 KKTAKDILIIDTAGRLHIDENLMNEIVRTKEAVN------PDEVLFVADAMTGQDAVNVA 235

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+ +   TG+I+TKMDG ARGG  + I      P+ F+G GE + + E F     ++ 
Sbjct: 236 KSFNDMLDATGIILTKMDGDARGGAALSIKEVTGKPLKFIGTGEKLTEFEQFYPDRMASR 295

Query: 310 ITGCLD 315
           I G  D
Sbjct: 296 ILGMGD 301


>gi|212550480|ref|YP_002308797.1| signal recognition particle receptor FtsY [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212548718|dbj|BAG83386.1| signal recognition particle receptor FtsY [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 319

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 111/304 (36%), Positives = 176/304 (57%), Gaps = 6/304 (1%)

Query: 15  RKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + L +G   T   L   I   +    ++D  + + LE++LI SD+GV    +I+E +  +
Sbjct: 15  KSLAEGLLKTRESLFRKIARSVAGKSKIDRELLDNLEEILIDSDMGVKTTLQIIERIENR 74

Query: 74  -RYAKDVSVQRVLYDVSELIHKML----MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
               +  ++  +   + E I  ML    +   + F    S +P+VI+VVGVNGVGKTT I
Sbjct: 75  TIRGRYANIDELTPILIEEIVSMLQDNDVEEVEDFVIPDSKKPYVIMVVGVNGVGKTTTI 134

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+        ++ L A DTFR+AA++QL +W++R     V   +G+D A++ ++    
Sbjct: 135 GKLAYHFKKKDKRIFLGAADTFRAAAVEQLNVWSERVGVPIVKQRMGADPASVVHDTLTS 194

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A A   D++IIDTAGRLHN   LM  + K+  V+K++ P+APH +L VLD++TGQNA  Q
Sbjct: 195 AIANNADIVIIDTAGRLHNKIGLMNELTKIKNVIKKIIPYAPHEILLVLDSSTGQNAYNQ 254

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F      T L +TK+DGTA+GG ++ I    ++PV ++G+GE + DL+ F  ++F  
Sbjct: 255 AEKFSKATEITSLAITKLDGTAKGGVVVGISNQLQVPVKYIGIGERLEDLQIFRKREFVN 314

Query: 309 VITG 312
            + G
Sbjct: 315 SLFG 318


>gi|297824631|ref|XP_002880198.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297326037|gb|EFH56457.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 366

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 180/311 (57%), Gaps = 6/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDG--VREELEDLLIRSDIGVAVA 63
           +  ++ S + K+  GF+ T   L   I +++    L +   V +ELE+ L+ SD G  + 
Sbjct: 56  IKEKAKSDVEKVFSGFSKTRENL-AVIDELLLFWNLSETDRVLDELEEALLVSDFGPKIT 114

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
            +IVE L     +  +     + D +   + +ML   +          +P VI++VGVNG
Sbjct: 115 VRIVERLREDIMSGKLKSGSEIKDALKGSVLEMLAKKNTKTELQLGFRKPAVIMIVGVNG 174

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT +GKL+ ++ + G KV++AAGDTFR+AA DQL+IWA+RT  + V +E   + AA 
Sbjct: 175 GGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKAAT 234

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A K+ + +  DV++ DT+GRLH N  LM  +    + + ++   AP+ +L VLD  
Sbjct: 235 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGN 294

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L Q   F+ V G TGLI+TK+DG+ARGG ++ +V    IPV F+GVGE + DL+P
Sbjct: 295 TGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQP 354

Query: 301 FVAKDFSAVIT 311
           F  + F   I 
Sbjct: 355 FDPEAFVNAIF 365


>gi|208779229|ref|ZP_03246575.1| signal recognition particle protein [Francisella novicida FTG]
 gi|208745029|gb|EDZ91327.1| signal recognition particle protein [Francisella novicida FTG]
          Length = 458

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/305 (32%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L +        ++   L+ +D+ + V +K +  +  K   
Sbjct: 2   FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I K L   + P N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +   A K A+
Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPEDIVTAAIKTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH ++ +M  I ++ ++ K      P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|153954026|ref|YP_001394791.1| hypothetical protein CKL_1401 [Clostridium kluyveri DSM 555]
 gi|219854640|ref|YP_002471762.1| hypothetical protein CKR_1297 [Clostridium kluyveri NBRC 12016]
 gi|146346907|gb|EDK33443.1| Hypothetical protein CKL_1401 [Clostridium kluyveri DSM 555]
 gi|219568364|dbj|BAH06348.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 449

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL+E +  +    +L +  +++ + +    L+ +D+   V +  V+ +  K  
Sbjct: 2   AFEGLASKLQETLKKLRGKGKLSEKDIKDAMREVKLALLEADVNYKVVRNFVKSVSEKCL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E +  ++        +       +I++VG+ G GKTT+ GK
Sbjct: 62  GEEVLKSLTPAQQVIKIVNEELTSLMGNSESSIEYSPDG-LTIIMLVGLQGSGKTTMCGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++     K +L A D +R AAI QL+I   +            +A  +   A   A+
Sbjct: 121 LALQLRKKNKKPLLVACDIYRPAAIKQLQIVGKQIDIPVFSMGDKVEAVDICKGAVTYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K++V+IIDTAGRL  +  LM  + ++   +       P  +L V+D+ TGQ+A+    
Sbjct: 181 DNKLNVIIIDTAGRLQIDEELMDELKQIKENIN------PQEILLVVDSMTGQDAVNVAS 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G+GE +NDLE F     ++ I
Sbjct: 235 SFNEQLNINGVVLTKLDGDTRGGAALSIRAITGKPIKFVGMGEKMNDLEVFYPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|319649602|ref|ZP_08003758.1| recognition particle-docking protein FtsY [Bacillus sp. 2_A_57_CT2]
 gi|317398764|gb|EFV79446.1| recognition particle-docking protein FtsY [Bacillus sp. 2_A_57_CT2]
          Length = 334

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 127/310 (40%), Positives = 186/310 (60%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+  ++ S   K   G   T       + D++S  R++D+   EELE++LI +D+G  
Sbjct: 8   KEKITKQTDSVTEKFKDGLTKTRDNFSNKVNDLVSRYRKVDEEFFEELEEILIGADVGFD 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              ++VEEL  +   K++   R +  V       I+      S   N   S    VIL V
Sbjct: 68  TVMELVEELRREVKRKNIQDPRDVQAVISEKLVEIYDSAGETSTELNIQ-SEGLTVILFV 126

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K  + G  V+LAAGDTFR+ AI+QL++W +R   D +    GSD
Sbjct: 127 GVNGVGKTTTIGKLAHKFKNEGKNVLLAAGDTFRAGAIEQLEVWGERVGVDVIKQGAGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+++K D+LI DTAGRL N   LM  + K+ RV++R  P APH VL VL
Sbjct: 187 PAAVMYDAVQSAKSRKADILICDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVL 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQNA+ Q + F      +G+++TK+DGTA+GG ++ I    +IPV F+G+GE ++D
Sbjct: 247 DATTGQNAMIQAKTFKEATDVSGIVLTKLDGTAKGGIVLAIRNELEIPVKFVGLGEKMDD 306

Query: 298 LEPFVAKDFS 307
           L+ F A+ + 
Sbjct: 307 LQEFNAEQYV 316


>gi|295399782|ref|ZP_06809763.1| signal recognition particle-docking protein FtsY [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978185|gb|EFG53782.1| signal recognition particle-docking protein FtsY [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 330

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 126/309 (40%), Positives = 188/309 (60%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+  ++ S   K  +G A T       + D+I+  R++D+   EELE++LI +D+GV 
Sbjct: 8   KEKITKQTDSVTEKFKQGLAKTRDSFAGRVNDLIARYRKVDEEFFEELEEILIGADVGVT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF-SHRPHVILVVG 118
              ++V+EL  +   +++   + +  V   +L+        KP   +       VIL VG
Sbjct: 68  TVMELVDELKMEVKRRNIQNPQEMQAVISEKLVEIYRGGDDKPAELNIQEDGLTVILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K+   G  VMLAAGDTFR+ AI+QL++W +R  A+ +    GSD 
Sbjct: 128 VNGVGKTTTIGKLAHKLKSEGKTVMLAAGDTFRAGAIEQLEVWGERVGAEVIKQTAGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+  DVL+ DTAGRL N   LM  + K+ RV++R    APH VL VLD
Sbjct: 188 AAVIYDAIQAAKARGADVLLCDTAGRLQNKVNLMKELEKVKRVIEREILGAPHEVLLVLD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++DL
Sbjct: 248 ATTGQNAMSQAKTFKEATNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKFVGLGEKVDDL 307

Query: 299 EPFVAKDFS 307
           +PF  + + 
Sbjct: 308 QPFDPEQYV 316


>gi|194337595|ref|YP_002019389.1| signal recognition particle-docking protein FtsY [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310072|gb|ACF44772.1| signal recognition particle-docking protein FtsY [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 317

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 181/313 (57%), Gaps = 11/313 (3%)

Query: 11  LSWIR-----KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQ 64
           + +       +L +G   T    +E +  I   +  +DD   EELE +L+ +D+GV    
Sbjct: 1   MGFFDKFKISRLKEGLEKTRDTFREKLAVITKGKTEIDDDFLEELETILVAADVGVETTL 60

Query: 65  KIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSH----RPHVILVVGV 119
            IV+ +  +   +    +  L   + E I ++L    +    DF      +P+VIL+VGV
Sbjct: 61  GIVDAITERAKQETYRSEEELNRMLMEEIQQLLEETGEEHPLDFDAPLPAKPYVILIVGV 120

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT + KL+     AG KV++AA DTFR+AA +QL+IWADR     +    GSD A
Sbjct: 121 NGAGKTTSVAKLAHNYDKAGKKVIIAAADTFRAAAYEQLQIWADRAGVPMIGQAQGSDPA 180

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ Y+A   A ++  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD 
Sbjct: 181 SVVYDAVSAAVSRNADVVLVDTAGRLHNKSHLMEELAKIMRVAKKRIPEAPHEVLLVLDG 240

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q   F      TGL++TK+DGTA+GG ++ I    K+PV ++GVGE I+DL+
Sbjct: 241 TTGQNAVLQAREFTKFVKVTGLVVTKLDGTAKGGIVLSISRELKLPVKYIGVGEKIDDLQ 300

Query: 300 PFVAKDFSAVITG 312
            F   +F   + G
Sbjct: 301 LFDRAEFVKALLG 313


>gi|332524016|ref|ZP_08400268.1| signal recognition particle protein [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332315280|gb|EGJ28265.1| signal recognition particle protein [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 517

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/307 (25%), Positives = 144/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    +I   ++L +     V +E+   L+ +D+ + V +  ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNIRGKKKLSEKDVQEVTKEIRLALLEADVALPVVKTFIKHVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       Q+++  V+E +  +L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEIIDTLDPTQQIVKIVNEELTGILGSETATIE-KAPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+  +   + ++ A D +R AAIDQLK    + +           A  +  +    A
Sbjct: 121 LANKLIKEEDARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVEIVRQGLSLA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  + D ++IDTAGRL  +  LM  +  +  +        P+ +L V+D+  GQ A    
Sbjct: 181 KENRNDYVLIDTAGRLQIDEKLMTELRDVKALAN------PNEILLVVDSMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 DEFNKQLEITGVVLTKIDGDTRGGAALSVREITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDL 301


>gi|197284282|ref|YP_002150154.1| signal recognition particle protein [Proteus mirabilis HI4320]
 gi|227357814|ref|ZP_03842162.1| signal recognition particle protein [Proteus mirabilis ATCC 29906]
 gi|194681769|emb|CAR40980.1| signal recognition particle protein [Proteus mirabilis HI4320]
 gi|227161924|gb|EEI46942.1| signal recognition particle protein [Proteus mirabilis ATCC 29906]
          Length = 453

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +        E+   L+ +D+ + V ++ +  +      
Sbjct: 2   FENLSDRLSRTLRNISGRGRLTEENIKDTLREVRMALLEADVALPVVREFIARVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   +   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVQNELVNAMGEVNNDLDLS-AQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K +L  + D +R AAI QL+  A+    DF  S +  +   +A  A K AQ
Sbjct: 121 GKFLKEKKKKKVLVVSADVYRPAAIKQLETLAETVGVDFFPSTVQENPVTIASNALKHAQ 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGRLH +  +M  I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 LQFYDVLLVDTAGRLHVDEGMMEEIQLLHKAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|332183991|gb|AEE26245.1| Signal recognition particle, subunit Ffh SRP54 [Francisella cf.
           novicida 3523]
          Length = 458

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L +        ++   L+ +D+ + V +K +  +  K   
Sbjct: 2   FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I K L   + P N   +  P +IL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAIILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +   A K A+
Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPQDIVTAAIKTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH ++ +M  I ++ ++ K      P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|228947566|ref|ZP_04109856.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123361|ref|ZP_04252565.1| Cell division protein ftsY [Bacillus cereus 95/8201]
 gi|228660137|gb|EEL15773.1| Cell division protein ftsY [Bacillus cereus 95/8201]
 gi|228812086|gb|EEM58417.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 329

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 183/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D+    R++D+   EELE++LI +D+GV+
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVS 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVG 118
              +++++L  +   +++   R +  V       +      F  +         V+L VG
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPREVQAVISEKLIEIYKGDSNFTNEVNMQKDGLTVVLFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD 
Sbjct: 128 VNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+D
Sbjct: 188 AAVMYDAVQAAKARNVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVID 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL
Sbjct: 248 ATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307

Query: 299 EPFVAKDFS 307
           + F  + + 
Sbjct: 308 QQFDPEQYV 316


>gi|258543517|ref|YP_003188950.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-01]
 gi|256634595|dbj|BAI00571.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-01]
 gi|256637651|dbj|BAI03620.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-03]
 gi|256640705|dbj|BAI06667.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-07]
 gi|256643760|dbj|BAI09715.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-22]
 gi|256646815|dbj|BAI12763.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-26]
 gi|256649868|dbj|BAI15809.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-32]
 gi|256652858|dbj|BAI18792.1| cell division protein FtsY [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655912|dbj|BAI21839.1| cell division protein FtsY [Acetobacter pasteurianus IFO 3283-12]
          Length = 309

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 146/306 (47%), Positives = 215/306 (70%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +L +  +L +G + ++ KL  GIT I + R+LDD   EELEDLLI +D+G AVA++I+E 
Sbjct: 2   ALGFFSRLKQGLSRSTQKLGGGITGIFTKRKLDDEALEELEDLLITADMGPAVAERIIES 61

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             + R+  +V+ + +   +++ I  +L P++KPF  D +H+PHV+LVVGVNGVGKTT IG
Sbjct: 62  FRSSRFGTEVTDEEIRNTLADEIATILEPVAKPFEPDPAHKPHVVLVVGVNGVGKTTTIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+++  ++ G KVM+ AGDTFR+AA++QL+IW +RT    +    G+DAA LA+EA K+ 
Sbjct: 122 KMARFFTEEGKKVMMVAGDTFRAAAVEQLQIWGERTGCPVIAGPPGADAAGLAFEALKRG 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D+L +DTAGRLHN S LM  + K+IRV+++ D  APHSVL VLDATTGQNA+ QV
Sbjct: 182 KAEGADLLFVDTAGRLHNKSALMEELAKIIRVMRKFDETAPHSVLLVLDATTGQNAVEQV 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F  +   TGL++TK+DG+ARGG ++ +     +PV+ +GVGE   DL PF A D++  
Sbjct: 242 RVFRELVNVTGLVVTKLDGSARGGIVVALADQFGLPVHAVGVGEQAEDLRPFSAVDYARG 301

Query: 310 ITGCLD 315
           + G  D
Sbjct: 302 LVGVAD 307


>gi|88606999|ref|YP_505757.1| signal recognition particle-docking protein FtsY [Anaplasma
           phagocytophilum HZ]
 gi|88598062|gb|ABD43532.1| signal recognition particle-docking protein FtsY [Anaplasma
           phagocytophilum HZ]
          Length = 305

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 127/305 (41%), Positives = 189/305 (61%), Gaps = 4/305 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKI 66
           S + S+ + L +G + TS +L EGI +I   +  +D    + L DLLI +D+G  VA   
Sbjct: 2   SSNESFWQSLKRGLSKTSARLSEGIRNIFGGKADVDQSTLKALRDLLISTDMGPDVADFF 61

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +++ T ++   V+ +  L   SE I   L P S P     +H PH+IL+ GVNG GKTT
Sbjct: 62  TQKISTLKFTDSVAEEVRLKLASE-IENFLQPRSAPIT--ITHTPHIILLCGVNGSGKTT 118

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            + KL+ K     + V++ A DTFR+AA++QL +WA+R S   V   IG+DAA++AY+  
Sbjct: 119 TVAKLAHKFMKKNMSVIIGACDTFRAAAVEQLNVWAERISCPIVTGTIGADAASVAYKTV 178

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A  +  DV+IIDTAGRLHN+  LM  + K+ RV++R D  APH ++ VLDAT GQN  
Sbjct: 179 ERAVKEPFDVVIIDTAGRLHNHKNLMEELAKICRVIRRHDEKAPHDIILVLDATIGQNTF 238

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVEMF +     GLI+TK+DGTA+GG ++ +   + + ++ +G GEGI DLE F A +F
Sbjct: 239 TQVEMFSSFVDVGGLILTKLDGTAKGGVVLRVSQKYNLMIHAIGTGEGIEDLEDFSATNF 298

Query: 307 SAVIT 311
           +  + 
Sbjct: 299 AKSLL 303


>gi|319401472|gb|EFV89682.1| signal recognition particle protein [Staphylococcus epidermidis
           FRI909]
          Length = 455

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    ++ +     +  E+   L+ +D+   V ++ V+ +  +  
Sbjct: 2   AFEGLSDRLQATMQKMRGKGKVTEADIKTMMREVRLALLEADVNFKVVKEFVKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++   +       +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQEELTSLMGGENTSIKM-ANKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K +L AGD +R AAIDQL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPLLVAGDIYRPAAIDQLQTVGKQIDIPVYSEGDQVPPQQIVENALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P  ++ V+DA TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDETLMNELQEVKEISK------PDEIMLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      +G+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 QSFDEQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|27467830|ref|NP_764467.1| ffh protein [Staphylococcus epidermidis ATCC 12228]
 gi|251810667|ref|ZP_04825140.1| signal recognition particle protein Ffh [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876331|ref|ZP_06285198.1| signal recognition particle protein [Staphylococcus epidermidis
           SK135]
 gi|293366798|ref|ZP_06613474.1| signal recognition particle protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315375|gb|AAO04509.1|AE016747_6 ffh protein [Staphylococcus epidermidis ATCC 12228]
 gi|251805827|gb|EES58484.1| signal recognition particle protein Ffh [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295356|gb|EFA87883.1| signal recognition particle protein [Staphylococcus epidermidis
           SK135]
 gi|291319099|gb|EFE59469.1| signal recognition particle protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329724304|gb|EGG60816.1| signal recognition particle protein [Staphylococcus epidermidis
           VCU144]
 gi|329736314|gb|EGG72586.1| signal recognition particle protein [Staphylococcus epidermidis
           VCU028]
 gi|329736596|gb|EGG72862.1| signal recognition particle protein [Staphylococcus epidermidis
           VCU045]
          Length = 455

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    ++ +     +  E+   L+ +D+   V ++ V+ +  +  
Sbjct: 2   AFEGLSDRLQATMQKMRGKGKVTEADIKTMMREVRLALLEADVNFKVVKEFVKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++   +       +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQEELTSLMGGENTSIKM-ANKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K +L AGD +R AAIDQL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPLLVAGDIYRPAAIDQLQTVGKQIDIPVYSEGDQVSPQQIVENALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P  ++ V+DA TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------PDEIMLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      +G+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 QSFDEQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|94970363|ref|YP_592411.1| signal recognition particle-docking protein FtsY [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552413|gb|ABF42337.1| signal recognition particle-docking protein FtsY [Candidatus
           Koribacter versatilis Ellin345]
          Length = 320

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 121/308 (39%), Positives = 179/308 (58%), Gaps = 3/308 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQK 65
             +     +++ +    T   L E I D +     +DD    ELE  LI +D+G     +
Sbjct: 12  EKKPSGLFQRMKEAVTRTRESLTERIEDAVGVRPEIDDYTLNELELTLIAADLGSVTTAE 71

Query: 66  IVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +++ L  K   K V     +  V  +E++  +    +K         P VILVVGVNG G
Sbjct: 72  VLQALKDKVDRKQVQSTDEIKGVLKAEILRLLNEAAAKSPVRTVDQPPEVILVVGVNGTG 131

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKLS  +   G +V+L A DTFR+AAIDQL++W +RT  + + ++ G D +A+ +
Sbjct: 132 KTTTIGKLSNLLRAQGKQVLLCAADTFRAAAIDQLEVWGERTGVEVIKTKPGGDPSAVLF 191

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ VD +I+DTAGRLH    LM  + KM R  ++  P APH VL V+DATTGQ
Sbjct: 192 DALQAAKARAVDYVIVDTAGRLHTKQNLMLELEKMKRTAQKFIPSAPHEVLLVMDATTGQ 251

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N L+Q ++F   AG TG+++TK+DGTA+GG ++ I     +PV ++GVGE I D+ PF A
Sbjct: 252 NGLQQAKLFTESAGVTGIVLTKLDGTAKGGVVVAISRELGLPVRYVGVGEKIGDILPFNA 311

Query: 304 KDFSAVIT 311
            DF   + 
Sbjct: 312 NDFVESLF 319


>gi|86133831|ref|ZP_01052413.1| signal recognition particle-docking protein FtsY [Polaribacter sp.
           MED152]
 gi|85820694|gb|EAQ41841.1| signal recognition particle-docking protein FtsY [Polaribacter sp.
           MED152]
          Length = 323

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 125/319 (39%), Positives = 184/319 (57%), Gaps = 21/319 (6%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           +S+ +          L KG   T       ++  ++ + ++DD V + LE++L+ SD+GV
Sbjct: 1   MSFFKNIFSKEKKETLDKGLEKTKESFFGKLSKAVAGKSKVDDDVLDNLEEVLVASDVGV 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----------SH 109
               K+++ +  +    K V    +   + E I  +L   +     DF            
Sbjct: 61  NTTLKVIDRIEARVAKDKYVGTDELNAILREEIAGLLSETNVGNETDFTIPEIPKKEGKK 120

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            P+V++VVGVNGVGKTT IGKL+ +    GLKV+L A DTFR+AAIDQL++WADRT    
Sbjct: 121 MPYVLMVVGVNGVGKTTTIGKLASQFKKQGLKVVLGAADTFRAAAIDQLQVWADRTDVPI 180

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +  E+GSD A++A++    A  +  DV+IIDTAGRLHN   LM  + K+ RV++++   A
Sbjct: 181 IRQEMGSDPASVAFDTLTSAVKQDADVVIIDTAGRLHNKVNLMNELTKIKRVMQKVVSDA 240

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL VLD +TGQNA  Q + F      T L +TK+DGTA+GG +I I    +IPV ++
Sbjct: 241 PHDVLLVLDGSTGQNAFEQAKQFTKATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYI 300

Query: 290 GVGEGINDLEPFVAKDFSA 308
           GVGEGI+DL+ F   +F  
Sbjct: 301 GVGEGIDDLQVFNKVEFVD 319


>gi|117923817|ref|YP_864434.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Magnetococcus sp. MC-1]
 gi|117607573|gb|ABK43028.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Magnetococcus sp. MC-1]
          Length = 462

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 152/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+     +    +L +        E+   L+ +D+ + V +  +  +  K   
Sbjct: 2   FESLSDRLEITFKKLKGQGKLSEQNIKDALREVRIALLEADVNLNVTKAFIRRVQEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V + +  ++   ++  N   +  P V+++ G+ G GKTT   KL
Sbjct: 62  VEVLKSLTPGQQVIKIVHDELVAVMGAANESLNL-ANQPPVVVMMAGLQGSGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ D    K +LA+ D +R AA+ QL+   ++  A  + +E   +   +A  A ++A+
Sbjct: 121 AKRLIDKERKKCLLASLDVYRPAAMKQLQTVGEQVGATVLPTEPTENPREIAKRALEEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL +DTAGRLH +  LM+ +  +  ++       PH +L V DA TGQ+A+   +
Sbjct: 181 KGGFDVLFLDTAGRLHIDEALMSELADVAALVN------PHEILFVADAMTGQDAVSVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG++++K DG ARGG  + I      P+ FLG GE ++ LEPF     ++ I
Sbjct: 235 NFDDRLNITGVLLSKTDGDARGGAALSIREVTGKPIKFLGTGEKLDGLEPFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|300933894|ref|ZP_07149150.1| signal recognition particle protein [Corynebacterium resistens DSM
           45100]
          Length = 527

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 141/318 (44%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLTGALKGLRGKGRLTEEDINATAREIRLALLEADVSLPVVRGFINRVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             VS      Q+V+  V+E + ++L   ++  N    H P +I++ G+ G GKTT+ GKL
Sbjct: 62  AAVSEALNPAQQVIKIVNEELQQILGGETRRLNL-AKHPPTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           SK +   G   ML A D  R  A+ QL+I  +R        E                 D
Sbjct: 121 SKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERAGVPVFAPEPGTSLDSHDHEMGTSKGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A   + D++IIDTAGRL  + +L      M +     D   P  VL V+
Sbjct: 181 PIEVAQRGVEEAYRTQHDIVIIDTAGRLGIDEVL------MKQARDIRDAVEPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F      TG+++TK+DG ARGG  + I      P+ +   GE + D
Sbjct: 235 DAMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPILYASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     +  I G  D
Sbjct: 295 FDIFHPDRMANRILGMGD 312


>gi|237654272|ref|YP_002890586.1| signal recognition particle-docking protein FtsY [Thauera sp. MZ1T]
 gi|237625519|gb|ACR02209.1| signal recognition particle-docking protein FtsY [Thauera sp. MZ1T]
          Length = 461

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 183/303 (60%), Gaps = 3/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             SW  +L  G A T  ++  G+  +   R++D+ + EELE  L+ +D GV   Q ++++
Sbjct: 146 KKSWTERLKAGLARTRNQIGGGLASLFGLRKIDEDLLEELESTLLMADCGVDATQHLIDD 205

Query: 70  LLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +     +     L   +++ +H+++ PL  P      HRP +I++ GVNG GKTT I
Sbjct: 206 LRRRWKRDRLETADQLQKALADGLHEIIAPLEAPLEV-AGHRPFIIMIAGVNGSGKTTSI 264

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K     G  V+LAAGDTFR+AA +QL  W +R +   V  +   DAAA+ ++A   
Sbjct: 265 GKLAKYFQAHGKSVLLAAGDTFRAAAREQLMTWGERNNVTVVAQD-SGDAAAVIFDAINA 323

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+K+DV++ DTAGRL     LM  I K+ RV+ + DP  PH VL VLDA  GQNAL Q
Sbjct: 324 ARARKIDVVLADTAGRLPTQLHLMEEIAKVRRVIAKADPSGPHEVLLVLDANIGQNALAQ 383

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V+ F    G TGL++TK+DGTA+GG L  I      P+ F+GVGEGI+DL+PF A++F  
Sbjct: 384 VKAFDKAIGVTGLVVTKLDGTAKGGVLAAIARQCPKPLRFIGVGEGIDDLQPFKAREFVD 443

Query: 309 VIT 311
            + 
Sbjct: 444 ALF 446


>gi|255541488|ref|XP_002511808.1| cell division protein ftsy, putative [Ricinus communis]
 gi|223548988|gb|EEF50477.1| cell division protein ftsy, putative [Ricinus communis]
          Length = 362

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 185/311 (59%), Gaps = 6/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDG--VREELEDLLIRSDIGVAVA 63
           +  ++ S + K+  GF+ T   L     +++    L D   + +ELE++L+ SD G  + 
Sbjct: 52  IKEKAKSDVEKIFSGFSKTRDNL-AAFDELLLYWNLSDTDKILDELEEILLVSDFGPRIT 110

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
             IVE L     +  +     + D + + + ++L+      +      +P VI++VGVNG
Sbjct: 111 INIVESLRKDILSGKLKSGSEIKDALKKSVLQLLINKGNKTDLQLGFRKPAVIMIVGVNG 170

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT +GKL+ ++ + G K+++AAGDTFR+AA DQL+IWA+RT  + V +E   + A++
Sbjct: 171 GGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAEKEKAKASS 230

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A K+ + +  DV++ DT+GRLH N  LM  +    + + ++ P AP+ +L VLD  
Sbjct: 231 VLSQAIKRGKEQGFDVVLCDTSGRLHTNYSLMEELIACKKAIGKVVPGAPNEILLVLDGN 290

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L Q   F+ V G TGLI+TK+DG+ARGG ++ +V    IPV F+GVGEG+ DL+P
Sbjct: 291 TGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQP 350

Query: 301 FVAKDFSAVIT 311
           F A+ F   I 
Sbjct: 351 FDAEAFVNAIF 361


>gi|163941585|ref|YP_001646469.1| signal recognition particle-docking protein FtsY [Bacillus
           weihenstephanensis KBAB4]
 gi|163863782|gb|ABY44841.1| signal recognition particle-docking protein FtsY [Bacillus
           weihenstephanensis KBAB4]
          Length = 329

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 122/313 (38%), Positives = 193/313 (61%), Gaps = 12/313 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV+
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKIDEDFFEELEEILISADVGVS 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-------HVI 114
              +++++L  +   +++       +V  +I + L+ + K  + DFS+          V+
Sbjct: 68  TVMELIDQLKEEVQRRNIQDP---KEVQAVISEKLVGIYKG-DSDFSNEVNIQEDQLTVV 123

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L VGVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    
Sbjct: 124 LFVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGS 183

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL
Sbjct: 184 GSDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMNELEKVKRVIEREVPGAPHEVL 243

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE 
Sbjct: 244 LVIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQ 303

Query: 295 INDLEPFVAKDFS 307
           ++DL+ F  + + 
Sbjct: 304 MDDLQQFDPEQYV 316


>gi|34540847|ref|NP_905326.1| signal recognition particle protein [Porphyromonas gingivalis W83]
 gi|34397161|gb|AAQ66225.1| signal recognition particle protein [Porphyromonas gingivalis W83]
          Length = 445

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    R+ +       +++   L+ +D+   VA++  + +  K   
Sbjct: 2   FENLSERLDRSFKLLKGEGRITEINVAETLKDVRRALLDADVNYVVAKQFTDLVKEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       + ++  V + +  ++   S   N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTSVRPGELMVKIVHDELAALMGGHSVDINLKGS--PAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +    G + +L A D +R AAI QL I  ++                +A  A  +A+
Sbjct: 120 ANMLKSKQGKRPLLVACDVYRPAAIQQLMILGEQLGVPVYSEPDSKKPVEIARHAIAEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+IIDTAGRL  +  +M  I  +   ++      P+ VL V+D+ TGQ+A+   +
Sbjct: 180 TKGNDVVIIDTAGRLAIDEEMMREIEAIKAAIQ------PNEVLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F  +  +  I
Sbjct: 234 EFNTRLDFDGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKMEAIDAFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|258646849|ref|ZP_05734318.1| signal recognition particle protein [Dialister invisus DSM 15470]
 gi|260404288|gb|EEW97835.1| signal recognition particle protein [Dialister invisus DSM 15470]
          Length = 457

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 140/306 (45%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL+    D+    RL     D    E+   L+ +D+   VA+  + ++  K   
Sbjct: 3   FENLGDKLQSAFKDLRGKGRLSESDIDSALREVRRALLEADVNFKVAKDFIAQVREKAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V + + ++L           S    VI++VG+ G GKTT  GKL
Sbjct: 63  EEVFGSLKPDQTVIKIVRDELTELLGGTQSKITMS-SSGLTVIMLVGLQGAGKTTTAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G K +LAA D +R AAI QL++   +            D   +A  A   A++
Sbjct: 122 ALMLKKRGKKPLLAACDVYRPAAIKQLEVLGQQVDVPVYRMPDNVDPVHIARYAVDAAKS 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  +  LMA +  +   +       PH +L VLD+ TGQ+A+     
Sbjct: 182 YGRDVVILDTAGRLTIDEKLMAELRNIKSEVH------PHEILLVLDSMTGQDAVTTAGT 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVI 310
           F    G  G I+TKMDG ARGG  + I      P+  +GV E ++  LE F     +  I
Sbjct: 236 FDENLGIDGTILTKMDGDARGGAALSIKAVTGKPIKMIGVSEKLDGGLEDFHPDRMAGRI 295

Query: 311 TGCLDY 316
               D 
Sbjct: 296 LDLGDL 301


>gi|256820615|ref|YP_003141894.1| signal recognition particle protein [Capnocytophaga ochracea DSM
           7271]
 gi|315223725|ref|ZP_07865575.1| signal recognition particle protein [Capnocytophaga ochracea F0287]
 gi|256582198|gb|ACU93333.1| signal recognition particle protein [Capnocytophaga ochracea DSM
           7271]
 gi|314946300|gb|EFS98299.1| signal recognition particle protein [Capnocytophaga ochracea F0287]
          Length = 442

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 148/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL++ + ++    ++ +       +E+   L+ +D+   +A+     +  K   
Sbjct: 2   FDNLSDKLEKALHNLKGHGKITEINVAETLKEVRRALLDADVNYKIAKDFTNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V + + +++   +   N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QQVLTTLQPGQLMVKIVKDELTQLMGGDAAGVNL--SGNPTVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +    K +L A D +R AAIDQL I  ++        +  ++   +A +  + A+
Sbjct: 120 ANYLKNKRNKKPLLVACDVYRPAAIDQLHIVGEQVGVPVFSDKGNNNPVDIAKKGVQYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++V+I+DTAGRL  +  +M  I  + + L       P   L V+DA TGQ+A+   +
Sbjct: 180 ENHLNVVIVDTAGRLAVDEQMMTEISNIHKALN------PQETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V    G+I+TK+DG  RGG  I I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 AFNDVLNFDGVILTKLDGDTRGGAAITIKSVVNKPIKFVGTGEKMDAIDVFYPDRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|291556910|emb|CBL34027.1| signal recognition particle subunit FFH/SRP54 (srp54) [Eubacterium
           siraeum V10Sc8a]
          Length = 455

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S KL +  + + +  +L++  V+E   E++  L+ +D+   V +  V ++  +  
Sbjct: 2   AFEGLSDKLGKVFSKLKNHGKLNEKDVKEAMREVKMALLEADVSFPVVKDFVAKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V + + +++   +   ++  S  P VI++ G+ G GKTT   K
Sbjct: 62  GSEVMNSLTPAQQVIDIVHDELIQLMGTDTARIDFP-SKPPCVIMMCGLQGAGKTTHTAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K       + +L A D +R AAIDQLK+      A        ++   +A E+ K A+
Sbjct: 121 LAKYFKKQNRRPLLVACDIYRPAAIDQLKVVGASVDAHVFEMG-QTNPVKIAKESIKYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRLH +  LM  +  +   ++      P+ +L V+D+ TGQ+A+   +
Sbjct: 180 DNGFDVVILDTAGRLHIDEDLMNELKDIKAEVQ------PNEILLVVDSMTGQDAVNVAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +   TG+I+TK+DG  RGG  + ++     P+ F GVGE  +DLE F     +  I
Sbjct: 234 SFNDMLDITGVILTKLDGDTRGGAALSVLSVTGKPIKFAGVGEKTDDLEQFHPNRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|239636284|ref|ZP_04677286.1| signal recognition particle protein [Staphylococcus warneri L37603]
 gi|239597639|gb|EEQ80134.1| signal recognition particle protein [Staphylococcus warneri L37603]
 gi|330685685|gb|EGG97326.1| signal recognition particle protein [Staphylococcus epidermidis
           VCU121]
          Length = 455

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLSDRLQASMQRMRGKGKVTEADIKAMMREVRLALLEADVNFKVVKDFVKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + +  ++   +       +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQDELTNLMGGENSTIKM-ANKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML AGD +R AAIDQL+    +                +   A   A
Sbjct: 121 LALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQLDVPVYSEGDQVKPQQIVQNALAHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P  ++ V+DA TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELQEVKEIAK------PDEIMLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 QSFDEQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|325963720|ref|YP_004241626.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469807|gb|ADX73492.1| signal recognition particle subunit FFH/SRP54 (srp54) [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 527

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 146/314 (46%), Gaps = 26/314 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLTEADVDATVREIRRALLDADVAVPVVREFTGRVRERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E + ++L   ++       + P +I++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPSQQIVKIVNEELVEILGGETRRIRL-AKNGPTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC----------SEIGSDAAAL 181
           SK +   G   ML A D  R  A+ QL++   R                  +   D  A+
Sbjct: 121 SKWLKAQGHSPMLVACDLQRPNAVTQLQVVGQRAKVPVFAPHPGATSTELDQPAGDPVAV 180

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A    ++A+ K  DV+I+DTAGRL  ++ +M    ++ R +       P+ VL V+D+  
Sbjct: 181 ARAGVEEARQKLHDVVIVDTAGRLGVDADMMEQARQIRRAI------VPNEVLFVIDSMI 234

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+A+     F      TG++++K+DG ARGG  + +      PV F   GEG++D E F
Sbjct: 235 GQDAVNTALAFDEGVNFTGIVLSKLDGDARGGAALSVASVTGKPVMFASTGEGLDDFELF 294

Query: 302 VAKDFSAVITGCLD 315
                ++ I    D
Sbjct: 295 HPDRMASRILDMGD 308


>gi|326506274|dbj|BAJ86455.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326532852|dbj|BAJ89271.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 355

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 186/311 (59%), Gaps = 6/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL--DDGVREELEDLLIRSDIGVAVA 63
           +  ++ S + KL  GF+ T   L   + ++++   L   D V ++LE+ L+ SD G  ++
Sbjct: 45  IKEKAKSDVDKLFSGFSKTRENLS-VVDELLTYWNLADTDRVLDDLEEALLVSDFGPKIS 103

Query: 64  QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
            +IV+ L  + R  K  S   +   +   I ++L              +P VI++VGVNG
Sbjct: 104 FRIVDTLRDEIRDGKLKSGTEIKASLKRCILELLTTKGSKTELQLGFRKPAVIMIVGVNG 163

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAA 180
            GKTT +GKL+ +  + G KV++AAGDTFR+AA DQL+IWA+RT ++ V   +  + A +
Sbjct: 164 GGKTTSLGKLAHRFKNEGAKVLMAAGDTFRAAARDQLEIWAERTGSEIVIDNDKKAQAPS 223

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A K+ + +  D+++ DT+GRLH N  LM  +    +V+ +  P AP+ +L VLD T
Sbjct: 224 VLSQAVKRGKREGFDIVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGT 283

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L+Q + F+ V G TG I+TK+DGTARGG ++ +V    IPV F+GVGEG+ DL+P
Sbjct: 284 TGLNMLQQAKEFNDVVGITGFILTKLDGTARGGCVVSVVDELGIPVKFVGVGEGVEDLQP 343

Query: 301 FVAKDFSAVIT 311
           F A+ F   I 
Sbjct: 344 FDAEAFVEAIF 354


>gi|81428329|ref|YP_395329.1| Signal recognition particle protein Ffh [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78609971|emb|CAI55018.1| Signal recognition particle protein Ffh [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 478

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  ++ +    ++ +        E+   L+ +D+   V +  ++ +  K  
Sbjct: 2   AFEGLTERLQGALSKLRRKGKVTEADVNQAMREIRLALLEADVNFKVVKDFIKVVKEKAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E + KM+   + P N      P +I++VG+ G GKTT  GK
Sbjct: 62  GTEVLESLSPAQQIVKIVDEELTKMMGETAVPLNKS-PKIPTIIMMVGLQGAGKTTTAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + ++ A D +R AAIDQLK   ++  A         +   +  +   QA
Sbjct: 121 LATYLIKNEKARPLMIAADIYRPAAIDQLKTVGEQVGAPVFEMGTDVNPVEIVRQGLAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +K D ++IDTAGRL  +  LM  +  +       D   P+  L  +DA TGQ A+   
Sbjct: 181 ALQKNDYVLIDTAGRLQIDEALMQELADIN------DLARPNETLLTVDAMTGQAAVDVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F++    TG+++TK+DG  RGG  + I      P+ F G GE +N L+ F     S+ 
Sbjct: 235 EGFNSRLDITGVVLTKLDGDTRGGAALSIRAVTGKPIKFTGQGEKLNQLDVFYPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|119357327|ref|YP_911971.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354676|gb|ABL65547.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium
           phaeobacteroides DSM 266]
          Length = 449

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+     +     +++        +++  L+ +D+   VA+K+V+++  K   
Sbjct: 2   FDNLSDKLEATFKKLAGQATINEINIGIAMRDIKRALLNADVNYKVAKKLVDDIREKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V++ +  ++    +P N      P +I+V G+ G GKTT   KL
Sbjct: 62  EQVLKSVSPAQMIVKIVNDELTDLMGGEHQPLNLSPKKLPAIIMVAGLQGSGKTTFCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K++   G   ML A D +R AA+DQL+   ++        +   DA   A +  + A+ 
Sbjct: 122 AKRLKKNGKNPMLVAADVYRPAAVDQLRTLGEQVDVPVFSIDE-QDAMKAAVKGLEAARL 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRL  +  +MA    +   LK      P  +L V+D+  GQ A+   + 
Sbjct: 181 AAKDVVIIDTAGRLQIDEKMMAEAEALKHALK------PDELLFVVDSMMGQEAVNTAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG ARGG  + I    + P+ F+ VGE ++DL+ F     +  I 
Sbjct: 235 FNDRLDFDGVVLTKLDGDARGGAALSIRQVVEKPIKFISVGEKVDDLDLFYPDRMAQRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|229013030|ref|ZP_04170195.1| Cell division protein ftsY [Bacillus mycoides DSM 2048]
 gi|228748284|gb|EEL98144.1| Cell division protein ftsY [Bacillus mycoides DSM 2048]
          Length = 332

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 119/310 (38%), Positives = 187/310 (60%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + +++   R++D+   EELE++LI +D+GV+
Sbjct: 11  KEKISKQTDTVTEKFKQGLEKTRNSFADKVNELVYRYRKIDEDFFEELEEILISADVGVS 70

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   + +  V       I+K     S   N        V+L V
Sbjct: 71  TVMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSDFSNEVNIQEDQ-LTVVLFV 129

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 130 GVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 189

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 190 PAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMNELEKVKRVIEREVPGAPHEVLLVI 249

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 250 DATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDD 309

Query: 298 LEPFVAKDFS 307
           L+ F  + + 
Sbjct: 310 LQQFDPEQYV 319


>gi|157363112|ref|YP_001469879.1| signal recognition particle-docking protein FtsY [Thermotoga
           lettingae TMO]
 gi|157313716|gb|ABV32815.1| signal recognition particle-docking protein FtsY [Thermotoga
           lettingae TMO]
          Length = 294

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/301 (38%), Positives = 179/301 (59%), Gaps = 8/301 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  +L  G +     L EG++ I+   ++ D + EELE+ L+ +D+G    + I+E+L
Sbjct: 1   MGFFERLKTGLSRARKALFEGLSQILKGSKISDEILEELEERLLMADVGYPTTEYIIEQL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              +          L  + E++  +L       N      P VI VVGVNG GKTT + K
Sbjct: 61  KQSK------TNDALETLKEIMIDLLS-FDSKLN-SPDQPPFVITVVGVNGTGKTTTVAK 112

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G  V+L A DTFR+AAI+QL+ W +RT +  +    G+D+AA+A++A   A+
Sbjct: 113 LAAYFQSTGKTVVLGAADTFRAAAIEQLREWGERTGSTVIYHSEGADSAAVAFDAVSHAK 172

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A++ DV+IIDTAGRLH    LM  + K+ RV+ ++ P APH VL V+DATTGQN L Q +
Sbjct: 173 AREKDVVIIDTAGRLHTKKNLMEELKKVHRVIGKVVPGAPHEVLLVIDATTGQNGLVQAK 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  +   TG+++TK+DGTA+GG  + I     +P+ F+G+GEG  DL+PF AK+F   +
Sbjct: 233 VFKEMVDVTGIVITKLDGTAKGGISLAIKKELNLPIKFIGIGEGAEDLKPFDAKEFVEAL 292

Query: 311 T 311
            
Sbjct: 293 I 293


>gi|282850086|ref|ZP_06259468.1| signal recognition particle protein [Veillonella parvula ATCC
           17745]
 gi|294795144|ref|ZP_06760278.1| signal recognition particle protein [Veillonella sp. 3_1_44]
 gi|282580275|gb|EFB85676.1| signal recognition particle protein [Veillonella parvula ATCC
           17745]
 gi|294453936|gb|EFG22311.1| signal recognition particle protein [Veillonella sp. 3_1_44]
          Length = 450

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+E    +    ++ +        ++   L+ +D+   VA+  V+ +  K  
Sbjct: 2   AFDSLSEKLQEAFQSLKGKGKITEDDVNLALRQVRTALLEADVNFMVAKDFVKSIKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V++ +  +L           S  P +I++VG+ G GKTT  GK
Sbjct: 62  GEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMIS-SKPPTIIMLVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQA 189
           L+  +   G + ML A D +R AAI QL++   +        E    +   +A  A +Q+
Sbjct: 121 LAVYLRKQGKRPMLVAADVYRPAAITQLQVVGKQIDIPVFSDETPGANPVDIARRAVEQS 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV+IIDTAGRL  + +LM  +  +   +       PH +L V+D+  GQ+A+   
Sbjct: 181 THMLKDVVIIDTAGRLAIDEVLMDELSNIKAAV------RPHEILLVVDSMIGQDAVTTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G  G+I+TK+DG ARGG  + I     +P+ F GV E ++  + F     ++ 
Sbjct: 235 QTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFYPDRMASR 294

Query: 310 ITGCLDY 316
           I    D+
Sbjct: 295 ILDLGDF 301


>gi|118497435|ref|YP_898485.1| signal recognition particle GTPase [Francisella tularensis subsp.
           novicida U112]
 gi|195536126|ref|ZP_03079133.1| signal recognition particle protein [Francisella tularensis subsp.
           novicida FTE]
 gi|118423341|gb|ABK89731.1| signal recognition particle GTPase [Francisella novicida U112]
 gi|194372603|gb|EDX27314.1| signal recognition particle protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 458

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 99/305 (32%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L +        ++   L+ +D+ + V +K +  +  K   
Sbjct: 2   FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I K L   + P N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +   A K A+
Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPEDIVTAAIKTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH ++ +M  I ++ ++ K      P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|313673954|ref|YP_004052065.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940710|gb|ADR19902.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 448

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ + KL+     +    +L +   +E    +   L+ +D+   V +K ++ + +K   
Sbjct: 2   FAALNEKLQGVFRKLRGEVKLTEENIKEAIKQVRIALLEADVNYKVVKKFIDNVQSKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q  +  V + +  +L   +   N    + P VI++VG+ G GKTT  GKL
Sbjct: 62  EIVLKSLTPDQVFIKLVHDELVSILGSHTSKINLK-PNPPTVIMLVGLQGSGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K     G   +L A D +R AAIDQL +  ++   D    +   +A  +A     QA+ 
Sbjct: 121 AKYFQKDGRSTLLVADDIYRPAAIDQLIVLGNQLKTDVFYDKESKNATEIAVRGVDQAKK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++IIDTAGRLH +  LM  +  +   +       P  +L V DA  GQ+A+   + 
Sbjct: 181 SAKDIVIIDTAGRLHIDEDLMKELKSIKNAVN------PDEILFVADAMIGQDAVNVAKQ 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+I TK+DG ARGG  + I+    +P+ F+G+GE ++  E F     ++ I 
Sbjct: 235 FNEAIGITGVIFTKLDGDARGGAALSIMEVTGVPIKFVGIGEKLDAFELFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|261880314|ref|ZP_06006741.1| signal recognition particle protein [Prevotella bergensis DSM
           17361]
 gi|270333004|gb|EFA43790.1| signal recognition particle protein [Prevotella bergensis DSM
           17361]
          Length = 451

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L+     +    ++ +       +++   L+ +D+   VA+     +  K   
Sbjct: 2   FENLTDRLERSFKILKGEGKITEVNVAETLKDVRRALLDADVNFKVAKNFTNTVKDKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + K++   +   +   S +P V+L+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPSQLLVKIVHDELAKLMGGEASELHL--SGKPAVVLMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +  G   +L A D +R AAI+QLK+  ++        E   +   +A  A ++A+
Sbjct: 120 ANLLKNKRGKNPLLVACDVYRPAAIEQLKVVGEQVGVPVYTEEGNKNVNEIALHAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I  +   +       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGNDVVIVDTAGRLAVDEDMMNEIASLKEAIS------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  L+ F     +  I
Sbjct: 234 EFNDRIDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFIGTGEKMEALDVFHPDRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|332652596|ref|ZP_08418341.1| signal recognition particle protein [Ruminococcaceae bacterium D16]
 gi|332517742|gb|EGJ47345.1| signal recognition particle protein [Ruminococcaceae bacterium D16]
          Length = 459

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 144/307 (46%), Gaps = 18/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL      +    RL +  V+E   E+   L+ +D+   V ++ + ++  K  
Sbjct: 2   AFEGLTEKLSAAFKKLRGKGRLSEADVKEAMREIRLALLEADVSYKVVKQFIAQVTEKAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q ++  V++ +  ++   S       S  P ++++VG+ G GKTT   K
Sbjct: 62  GADVLEALSPAQMIIKIVNQELTDLMGGTSAKLEI-ASKPPTIVMMVGLQGAGKTTNCAK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M    G + +LAA D +R AAI QL++   +           ++   +A  A   A
Sbjct: 121 LAGLMKKQNGKRPLLAACDIYRPAAIKQLEVVGQQLDLPVFQMG-QANPVDIAKAAIAHA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D++ +DTAGRLH +  LM  +  +   ++      P  +L V+DA  GQ+A+   
Sbjct: 180 KEHGNDMVFLDTAGRLHVDEELMDELRAIKAAVE------PTEILLVVDAMIGQDAVNAA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F       G+++TK+DG ARGG  + I      P+ F+GVGE ++ +E F     ++ 
Sbjct: 234 KAFDDALDIDGVVLTKLDGDARGGAALSIKAVTGKPIKFVGVGEKLDQIEVFHPDRMASR 293

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 294 ILGMGDM 300


>gi|315131030|gb|EFT87014.1| hypothetical protein CGSSa03_05784 [Staphylococcus aureus subsp.
           aureus CGS03]
          Length = 455

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    +L +     +  E+   L  +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALFEADVNFKVVKEFIKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + K++   +   N   +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS-NKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML A D +R AAI+QL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P+ ++ V+D+ TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELKEVKEIAK------PNEIMLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 ESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|313885966|ref|ZP_07819704.1| signal recognition particle protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924496|gb|EFR35267.1| signal recognition particle protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 446

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 136/305 (44%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +     + +       +++   L+ +D+   VA+    ++  K   
Sbjct: 2   FENLSERLERSFKILKGQGSITEINVAETLKDVRRALLDADVNYNVARDFTNQVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  V + +  ++   +   N   S  P +IL+ G+ G GKTT  GKL
Sbjct: 62  QDVLTSVNPGQMMVKLVHDELATLMGSEAVAINLKGS--PAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAI QL +  ++            D   +A  A   AQ
Sbjct: 120 ANMLKKQEQRKPLLVACDVYRPAAIQQLHVLGEQIGVPVYSEPDSKDPVQIARNAIAHAQ 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D +IIDTAGRL  +  +M  I  +   +       P   L V+D+ TGQ+A+    
Sbjct: 180 QEGLDTVIIDTAGRLAVDEEMMNEISSIKDAI------RPDETLFVVDSMTGQDAVNTAA 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F       G+I+TK+DG +RGG  + I      P+ F+G GE +  L+ F     +  I
Sbjct: 234 EFDKRLDFDGVILTKLDGDSRGGAALSIRSVVNKPIKFVGTGEKMEALQVFHPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|332981633|ref|YP_004463074.1| signal recognition particle-docking protein FtsY [Mahella
           australiensis 50-1 BON]
 gi|332699311|gb|AEE96252.1| signal recognition particle-docking protein FtsY [Mahella
           australiensis 50-1 BON]
          Length = 304

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 124/303 (40%), Positives = 183/303 (60%), Gaps = 4/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    KL  G A T       +  +I SS+ +D+   ++LE+LLI +D+G   A+ I+ +
Sbjct: 1   MGIFDKLKSGLAKTRDNFSSRVDGLINSSKVIDEEFYDQLEELLILADVGAKAAESIIND 60

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  +   + +     +  +  + + ++L   +   + D    P +ILVVGVNGVGKTT I
Sbjct: 61  IKKQVKQQKLRDPEQVRALLKDELKRVLSKNAASKDMDLY--PRIILVVGVNGVGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ K    G KV+LAA DTFR+AA +QL+IW+ R   D V  E GSD AA+ ++A + 
Sbjct: 119 GKLAYKFKQDGRKVLLAAADTFRAAATEQLEIWSQRAGVDIVKHEEGSDPAAVVFDAIQS 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AKK DV+I DTAGRLHN   LM  + K+ RV++R  P A   VL VLDATTGQNA+ Q
Sbjct: 179 AKAKKADVIICDTAGRLHNKKNLMEELKKVNRVVEREYPEAYKEVLLVLDATTGQNAVSQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F        + +TK+DGTA+GG +I I     +PV ++GVGEGI+DL+ F  ++F +
Sbjct: 239 ARVFKEAVDINSIALTKLDGTAKGGVIIAIADELSVPVKYIGVGEGIDDLQDFEPQNFVS 298

Query: 309 VIT 311
            + 
Sbjct: 299 ALL 301


>gi|293373983|ref|ZP_06620324.1| signal recognition particle-docking protein FtsY [Bacteroides
           ovatus SD CMC 3f]
 gi|292631059|gb|EFF49696.1| signal recognition particle-docking protein FtsY [Bacteroides
           ovatus SD CMC 3f]
          Length = 286

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/281 (41%), Positives = 170/281 (60%), Gaps = 5/281 (1%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKM 95
              ++DD V + LE++LI SD+GV     I++ +  +  A K V+ Q +   + + I  +
Sbjct: 3   GKSKVDDEVLDNLEEVLITSDVGVETTLNIIKRIEKRAAADKYVNTQELNLILRDEIAAL 62

Query: 96  LMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           L   +      F+   + +P+VI+VVGVNGVGKTT IGKL+ +   AG  V L A DTFR
Sbjct: 63  LTENNSGDVADFDVPIARKPYVIMVVGVNGVGKTTTIGKLAYQFKKAGKSVYLGAADTFR 122

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           +AA++QL IW +R     V  ++G+D A++AY+    A A   DV+IIDTAGRLHN   L
Sbjct: 123 AAAVEQLMIWGERVGVPVVKQKMGADPASVAYDTLSSAVANNADVVIIDTAGRLHNKVGL 182

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + K+  V+K++ P AP  VL VLD +TGQNA  Q + F      T + +TK+DGTA+
Sbjct: 183 MNELTKIKNVMKKVVPDAPDEVLLVLDGSTGQNAFEQAKQFTLATEVTAMAITKLDGTAK 242

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           GG +I I    KIPV ++G+GEG+ DL+ F   +F   + G
Sbjct: 243 GGVVIGISDQFKIPVKYIGLGEGMEDLQVFRKNEFVDSLFG 283


>gi|269797639|ref|YP_003311539.1| signal recognition particle protein [Veillonella parvula DSM 2008]
 gi|269094268|gb|ACZ24259.1| signal recognition particle protein [Veillonella parvula DSM 2008]
          Length = 450

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 146/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+E    +    ++ +        ++   L+ +D+   VA+  V+ +  K  
Sbjct: 2   AFDSLSEKLQEAFQSLKGKGKITEDDVNLALRQVRTALLEADVNFMVAKDFVKSIKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V++ +  +L           S  P +I++VG+ G GKTT  GK
Sbjct: 62  GEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMIS-SKPPTIIMLVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQA 189
           L+  +   G + ML A D +R AAI QL++   +        E    +   +A  A +Q+
Sbjct: 121 LAVYLRKQGKRPMLVAADVYRPAAITQLQVVGKQIDIPVFSDETPGANPVDIARRAVEQS 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV+IIDTAGRL  + +LM  +  +   +       PH +L V+D+  GQ+A+   
Sbjct: 181 THMLKDVVIIDTAGRLAIDEVLMDELSNIKAAV------RPHEILLVVDSMIGQDAVTTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G  G+I+TK+DG ARGG  + I     +P+ F GV E ++  + F     ++ 
Sbjct: 235 QTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFYPDRMASR 294

Query: 310 ITGCLDY 316
           I    D+
Sbjct: 295 ILDLGDF 301


>gi|149278721|ref|ZP_01884857.1| signal recognition particle-docking protein FtsY [Pedobacter sp.
           BAL39]
 gi|149230716|gb|EDM36099.1| signal recognition particle-docking protein FtsY [Pedobacter sp.
           BAL39]
          Length = 320

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 127/300 (42%), Positives = 182/300 (60%), Gaps = 5/300 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T       IT  ++ +  +DD V + LE++L+ SD+GV    KI+E +  +  
Sbjct: 20  LDKGLEKTKEGFLSKITKAVAGKSTVDDDVLDNLEEVLVTSDVGVTTTLKIIERIQDRVA 79

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKL 131
             K +S   + + + + I  +L   +      F    H+P+VI+VVGVNGVGKTT IGKL
Sbjct: 80  KDKYLSTTELNHLLRDEIQLLLSENNSNDFRKFEYGQHKPYVIMVVGVNGVGKTTTIGKL 139

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S K+   GLKV+L A DTFR+AA++Q+K+W +R     V   +GSD A++A++  + A A
Sbjct: 140 SHKLKAEGLKVVLGAADTFRAAAVEQIKLWGERVGVRVVAQAMGSDPASVAFDTLQSAVA 199

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRLHN   LM  +GK+  V++++ P APH +L VLD +TGQNA  Q + 
Sbjct: 200 NGEDVVIIDTAGRLHNKIGLMNELGKIKHVMEKVIPSAPHEILLVLDGSTGQNAFEQCKQ 259

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        L +TK+DGTA+GG +I I    KIPV ++GVGEG+NDL+ F  K F   + 
Sbjct: 260 FTEATDVNALAITKLDGTAKGGVVIGISDQFKIPVKYIGVGEGMNDLQLFDKKAFVDSLF 319


>gi|156741648|ref|YP_001431777.1| signal recognition particle protein [Roseiflexus castenholzii DSM
           13941]
 gi|156232976|gb|ABU57759.1| signal recognition particle protein [Roseiflexus castenholzii DSM
           13941]
          Length = 444

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 151/306 (49%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+     +    +L ++ VRE ++     L+ +D+ + V ++ V  +  K   
Sbjct: 2   FESLSDRLQAVFQKLGGKGKLTEEDVREAMKQVRIALLEADVNLKVVREFVARVTEKAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q+V+  V + +  +L   + P   +    P +I+++G+ G GKTT   KL
Sbjct: 62  EEVTKSLTPAQQVIKIVHQELIDLLGQANVPL-AEARPGPTIIMLIGLQGSGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L A D +R AAI QL+    +           S    +A  A ++A+ 
Sbjct: 121 ALWLRKKGKRPLLVAADIYRPAAITQLESLGRQLGIPVHSEGAQSRPPDIARNAVRRARD 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +  +IIDTAGRL  +  LM  + ++   ++      P   L V+DA  GQ A+R  E 
Sbjct: 181 ESITHVIIDTAGRLQIDEPLMVELEQINAAVE------PVERLLVVDAMIGQEAVRVAEE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND--LEPFVAKDFSAV 309
           F+   G TG+I TK+DG ARGG  + +     +P+ FLG GE +    +EPF     ++ 
Sbjct: 235 FNRRVGLTGIIFTKIDGDARGGAALSVRAVTGVPIKFLGSGEKVEASTIEPFHPDRLASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|314933415|ref|ZP_07840780.1| signal recognition particle protein [Staphylococcus caprae C87]
 gi|313653565|gb|EFS17322.1| signal recognition particle protein [Staphylococcus caprae C87]
          Length = 455

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    ++ +     +  E+   L+ +D+   V ++ V+ +  +  
Sbjct: 2   AFEGLSDRLQATMQKMRGKGKVTEADIKTMMREVRLALLEADVNFKVVKEFVKTVSDRAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++   +       +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQEELTSLMGGENTSIKM-ANKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML AGD +R AAIDQL+    +                +   A + A
Sbjct: 121 LALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQIDIPVYSEGDQVPPQQIVENALQHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P  ++ V+DA TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------PDEIMLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      +G+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 QSFDDQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|118594541|ref|ZP_01551888.1| Signal recognition particle GTPase, FtsY protein [Methylophilales
           bacterium HTCC2181]
 gi|118440319|gb|EAV46946.1| Signal recognition particle GTPase, FtsY protein [Methylophilales
           bacterium HTCC2181]
          Length = 385

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 115/303 (37%), Positives = 178/303 (58%), Gaps = 7/303 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  K+ KG   T  KL   +T++ S  ++D+   EELE +L+ +D+G+     ++  + 
Sbjct: 86  GFAEKIKKGLTKTREKLASPLTELFSFNKIDNSFYEELETILLTADVGIPATDLLISNVK 145

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVI 128
                  +   + L    EL+ K ++ L          +   P VI++VGVNG GKTT I
Sbjct: 146 ASVQKDKIVDPKALK---ELLKKNMVALLSTVEEQLVVKKTSPFVIMMVGVNGTGKTTTI 202

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K ++D    V++AAGDTFR+AA++QL++W +R     +  E G   +A+ ++A   
Sbjct: 203 GKLTKYLTDQNQSVLIAAGDTFRAAAVEQLQVWGERNKVSVISQETGD-PSAVIFDAINS 261

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AKK+DV I DTAGRL     L+  I K+ +V+ +    APH V+ V+DA TGQNA+ Q
Sbjct: 262 AKAKKIDVAIADTAGRLPTQKHLLDEITKIKKVMAKCHESAPHEVMLVIDANTGQNAINQ 321

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           ++ F+   G TGL++TK+DGTA+GG L  I      P+ F+GVGEGI+DL  F AK++  
Sbjct: 322 LKAFNEALGVTGLVITKLDGTAKGGILAAIAKEIPTPIRFIGVGEGIDDLRIFNAKEYVE 381

Query: 309 VIT 311
            + 
Sbjct: 382 AMF 384


>gi|30263850|ref|NP_846227.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Ames]
 gi|47529275|ref|YP_020624.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49186697|ref|YP_029949.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Sterne]
 gi|49478413|ref|YP_037908.1| recognition particle-docking protein FtsY [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|65321175|ref|ZP_00394134.1| COG0552: Signal recognition particle GTPase [Bacillus anthracis
           str. A2012]
 gi|165873287|ref|ZP_02217895.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0488]
 gi|167636667|ref|ZP_02394957.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0442]
 gi|170689653|ref|ZP_02880834.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0465]
 gi|190565956|ref|ZP_03018875.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035825|ref|ZP_03103227.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           W]
 gi|218904977|ref|YP_002452811.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           AH820]
 gi|227813245|ref|YP_002813254.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. CDC 684]
 gi|228928895|ref|ZP_04091927.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935161|ref|ZP_04097988.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229601511|ref|YP_002868084.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0248]
 gi|254683445|ref|ZP_05147305.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721378|ref|ZP_05183167.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A1055]
 gi|254735885|ref|ZP_05193591.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Western North America USA6153]
 gi|254739518|ref|ZP_05197215.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Kruger B]
 gi|254751174|ref|ZP_05203213.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Vollum]
 gi|254756722|ref|ZP_05208751.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Australia 94]
 gi|30258494|gb|AAP27713.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Ames]
 gi|47504423|gb|AAT33099.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49180624|gb|AAT56000.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. Sterne]
 gi|49329969|gb|AAT60615.1| recognition particle-docking protein FtsY [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|164710972|gb|EDR16541.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0488]
 gi|167527918|gb|EDR90734.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0442]
 gi|170666398|gb|EDT17180.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0465]
 gi|190562875|gb|EDV16841.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis Tsiankovskii-I]
 gi|195991474|gb|EDX55440.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           W]
 gi|218540047|gb|ACK92445.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           AH820]
 gi|227002741|gb|ACP12484.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. CDC 684]
 gi|228824526|gb|EEM70331.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830702|gb|EEM76307.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229265919|gb|ACQ47556.1| signal recognition particle-docking protein FtsY [Bacillus
           anthracis str. A0248]
          Length = 329

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 183/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D+    R++D+   EELE++LI +D+GV+
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVS 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVG 118
              +++++L  +   +++   R +  V       +      F  +         V+L VG
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPREVQAVISEKLIEIYKGDSDFTNEVNMQKDGLTVVLFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD 
Sbjct: 128 VNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+D
Sbjct: 188 AAVMYDAVQAAKARNVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVID 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL
Sbjct: 248 ATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307

Query: 299 EPFVAKDFS 307
           + F  + + 
Sbjct: 308 QQFDPEQYV 316


>gi|332299387|ref|YP_004441308.1| signal recognition particle protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176450|gb|AEE12140.1| signal recognition particle protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 446

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 136/305 (44%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +     + +       +++   L+ +D+   VA+    ++  K   
Sbjct: 2   FENLSERLERSFKILKGQGSITEINVAETLKDVRRALLDADVNYNVARDFTNQVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  V + +  ++   +   N   S  P +IL+ G+ G GKTT  GKL
Sbjct: 62  QDVLTSVNPGQMMVKLVHDELATLMGSEAVAINLKGS--PAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAI QL +  ++            D   +A  A   AQ
Sbjct: 120 ANMLKKQEQRKPLLVACDVYRPAAIQQLHVLGEQIGVPVYSEPDSKDPVQIARNAIAHAQ 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D +IIDTAGRL  +  +M  I  +   +       P   L V+D+ TGQ+A+    
Sbjct: 180 QEGLDTVIIDTAGRLAVDEEMMNEISSIKDAI------RPDETLFVVDSMTGQDAVNTAA 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F       G+I+TK+DG +RGG  + I      P+ F+G GE +  L+ F     +  I
Sbjct: 234 EFDKRLDFDGVILTKLDGDSRGGAALSIRSVVNKPIKFVGTGEKMEALQVFHPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|303237098|ref|ZP_07323668.1| signal recognition particle protein [Prevotella disiens FB035-09AN]
 gi|302482485|gb|EFL45510.1| signal recognition particle protein [Prevotella disiens FB035-09AN]
          Length = 447

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLDRSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKSFTDTVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++   +     +  ++P +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIVHDELAELMGGETVGLTLE--NKPAIILMSGLQGSGKTTFTGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAI+QLK+  +             D  A+A  A ++A+
Sbjct: 120 ANLLKTKEHKKPLLVACDVYRPAAIEQLKVVGESVGVPVYSEPESKDVNAIAEHAIREAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV+IIDTAGRL  ++ +M  I  +   +       P  VL V+D+ TGQ+A+   +
Sbjct: 180 ANGNDVVIIDTAGRLAVDTEMMNEIESLKNHVN------PDEVLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  L+ F     +  I
Sbjct: 234 EFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFIGTGEKMEALDVFHPNRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|113955324|ref|YP_729250.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           CC9311]
 gi|113882675|gb|ABI47633.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           CC9311]
          Length = 551

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 112/315 (35%), Positives = 177/315 (56%), Gaps = 5/315 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S ++V  E + W+ +L +G   T      G+ + +    L   V ++LE LL+R+D GV 
Sbjct: 234 SAEQVTLEEIDWLGRLRQGLEKTRQGFVTGLLENLGDDPLTPEVLDDLESLLLRADAGVQ 293

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVV 117
              ++++ L  +   + V     +  + E +  +L    K    +       R +V L+V
Sbjct: 294 ATDQVLDALRQRMNEQVVDPSEGIRFLKEQLRDLLDEPIKSSAVEVLAPQRDRLNVWLLV 353

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNGVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W DR+    V +    +
Sbjct: 354 GVNGVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVQVWGDRSDVPVVANPSANA 413

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A   A++K  D++++DTAGRL     LM  + K+ RV+ RL P A    L V
Sbjct: 414 DPAAVVFDAIGAARSKGTDLVLVDTAGRLQTKHNLMEELEKIRRVVDRLAPEAHVESLLV 473

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA+ GQN L+Q   F   AG TG+++TK+DGTARGG  + +    K+P+ F+G GEGI 
Sbjct: 474 LDASQGQNGLKQAMAFARAAGLTGVVITKLDGTARGGVALAVASEAKLPIRFIGAGEGIR 533

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF + +F   + 
Sbjct: 534 DLRPFNSFEFVEALL 548


>gi|194336566|ref|YP_002018360.1| signal recognition particle protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309043|gb|ACF43743.1| signal recognition particle protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 449

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     +     +++        +++  L+ +D+   VA+K+++++  K   
Sbjct: 2   FDSLSDKLEATFKKLAGQATINEINIGLAMRDIKRALLGADVNYKVAKKLIDDIREKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V + + +++    KP N      P VI+V G+ G GKTT   KL
Sbjct: 62  EQVIKSVSPAQMIVKIVYDELTELMGGEQKPLNLSPKKLPAVIMVAGLQGSGKTTFCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++  +G + ML A D +R AAIDQLK    +        E   DA   A +  + A++
Sbjct: 122 ALRLKKSGKQPMLVAADVYRPAAIDQLKALGQQVDVPVFAIEE-QDAMKAALQGLEAARS 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  + ++MA    +   LK      P  +L V+D+  GQ A+   + 
Sbjct: 181 AAKDVVIVDTAGRLQIDQVMMAEAESLKHALK------PDELLFVVDSMMGQEAVNTAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG +RGG  + I    + P+ F+ +GE ++DL+ F     +  I 
Sbjct: 235 FNDRLDFDGVVLTKLDGDSRGGAALSIRQVVEKPIKFISIGEKVDDLDLFYPDRMAQRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|15924227|ref|NP_371761.1| signal recognition particle-like protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926820|ref|NP_374353.1| hypothetical protein SA1080 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267728|ref|YP_001246671.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393786|ref|YP_001316461.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979558|ref|YP_001441817.1| signal recognition particle-like protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253315595|ref|ZP_04838808.1| signal recognition particle-like protein [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255006024|ref|ZP_05144625.2| signal recognition particle-like protein [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795707|ref|ZP_05644686.1| signal recognition particle protein [Staphylococcus aureus A9781]
 gi|258415931|ref|ZP_05682201.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A9763]
 gi|258419678|ref|ZP_05682645.1| signal recognition particle protein [Staphylococcus aureus A9719]
 gi|258434849|ref|ZP_05688923.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A9299]
 gi|258444575|ref|ZP_05692904.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A8115]
 gi|258447592|ref|ZP_05695736.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A6300]
 gi|258449434|ref|ZP_05697537.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A6224]
 gi|258454813|ref|ZP_05702777.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A5937]
 gi|269202853|ref|YP_003282122.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892724|ref|ZP_06300959.1| signal recognition particle protein [Staphylococcus aureus A8117]
 gi|282927578|ref|ZP_06335194.1| signal recognition particle protein [Staphylococcus aureus A10102]
 gi|295407176|ref|ZP_06816977.1| signal recognition particle protein [Staphylococcus aureus A8819]
 gi|296274794|ref|ZP_06857301.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245937|ref|ZP_06929796.1| signal recognition particle protein [Staphylococcus aureus A8796]
 gi|13701037|dbj|BAB42332.1| ffh [Staphylococcus aureus subsp. aureus N315]
 gi|14247007|dbj|BAB57399.1| signal recognition particle homolog [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|147740797|gb|ABQ49095.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946238|gb|ABR52174.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721693|dbj|BAF78110.1| signal recognition particle homolog [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|257789679|gb|EEV28019.1| signal recognition particle protein [Staphylococcus aureus A9781]
 gi|257839267|gb|EEV63741.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A9763]
 gi|257844263|gb|EEV68645.1| signal recognition particle protein [Staphylococcus aureus A9719]
 gi|257849210|gb|EEV73192.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A9299]
 gi|257850068|gb|EEV74021.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A8115]
 gi|257853783|gb|EEV76742.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A6300]
 gi|257857422|gb|EEV80320.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A6224]
 gi|257863196|gb|EEV85960.1| signal recognition particle subunit FFH/SRP54 [Staphylococcus
           aureus A5937]
 gi|262075143|gb|ACY11116.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282590581|gb|EFB95658.1| signal recognition particle protein [Staphylococcus aureus A10102]
 gi|282764721|gb|EFC04846.1| signal recognition particle protein [Staphylococcus aureus A8117]
 gi|285816919|gb|ADC37406.1| Signal recognition particle, subunit Ffh SRP54 [Staphylococcus
           aureus 04-02981]
 gi|294968029|gb|EFG44057.1| signal recognition particle protein [Staphylococcus aureus A8819]
 gi|297177101|gb|EFH36355.1| signal recognition particle protein [Staphylococcus aureus A8796]
 gi|312829631|emb|CBX34473.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|329727576|gb|EGG64032.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 455

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    +L +     +  E+   L  +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALFEADVNFKVVKEFIKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + K++   +   N   +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMS-NKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML A D +R AAI+QL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P+ ++ V+D+ TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELKEVKEIAK------PNEIMLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 ESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|296331170|ref|ZP_06873644.1| signal recognition particle-docking protein FtsY [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305674326|ref|YP_003865998.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151814|gb|EFG92689.1| signal recognition particle-docking protein FtsY [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412570|gb|ADM37689.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 329

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 121/309 (39%), Positives = 185/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+  ++ S   K   G   T    +  + D++S  R++D+   EELE++LI +D+G  
Sbjct: 8   KEKITKQTDSVSEKFKDGLEKTRSSFQNKVNDLVSRYRKVDEDFFEELEEVLISADVGFT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
              ++++EL  +   +++     +  V SE + ++     +  +       R +VIL+VG
Sbjct: 68  TVMELIDELKKEVKRRNIQDPMEVQSVISEKLVEIYNSGDEQISELNIQDGRLNVILLVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K+   G  V+LAAGDTFR+ AI+QL++W +RT    +    GSD 
Sbjct: 128 VNGVGKTTTIGKLAHKLKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQTAGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+A+  DVLI DTAGRL N   LM  + K+ RV++R  P APH VL  LD
Sbjct: 188 AAVIYDAVHAAKARNADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLALD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I    +IPV  +G+GE ++DL
Sbjct: 248 ATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELQIPVKLVGLGEKVDDL 307

Query: 299 EPFVAKDFS 307
           + F  + + 
Sbjct: 308 QEFDPESYV 316


>gi|312885342|ref|ZP_07745004.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mucilaginibacter paludis DSM 18603]
 gi|311302178|gb|EFQ79185.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Mucilaginibacter paludis DSM 18603]
          Length = 442

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 150/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL      +     + +       +E+   L+ +D+    A+   +++  K   
Sbjct: 2   FENLSDKLDRAFKVLKGQGTITEINVAETMKEIRKALLDADVNYKTAKAFTDDVRQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q +   +++ + +++   +   N+  +  P +IL+ G+NG GKTT  GKL
Sbjct: 62  QNVLTSISPGQLLTKIMNDELTQLMGGSTAELNFPAT--PTIILIAGLNGAGKTTFTGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +    G K +L AGD +R AAI+QLK+  ++       +    D  A+A E    A+
Sbjct: 120 ANFLKTQKGKKPLLVAGDVYRPAAIEQLKVLGEQIGVPVYANLESKDPIAIAREGVALAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRL  +  +M  I ++   L       PH +L V+D+ TGQ+A+   +
Sbjct: 180 QNGNNVVIVDTAGRLSIDEAMMVEIEQVKAALN------PHEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+     TG+++TK+DG  RGG  + I      P+ F+G GE +  L+ F     ++ I
Sbjct: 234 VFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVNKPIKFIGTGEKMEALDVFHPDRMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|255534965|ref|YP_003095336.1| Signal recognition particle, subunit Ffh SRP54 [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341161|gb|ACU07274.1| Signal recognition particle, subunit Ffh SRP54 [Flavobacteriaceae
           bacterium 3519-10]
          Length = 455

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   KL + + +I    ++ +       +E+   L+ +D+   VA+ + + +  K   
Sbjct: 2   FNSLQDKLDKALHNISGRGKITEINVAETVKEIRRALVDADVNYKVAKDLTKRVQDKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q +   V + +  ++    +  N   S +P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTSLSPGQLMTKIVHDELVDLMGKTHEGINL--SGKPSVILIAGLQGSGKTTFSGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +    K +L A D +R AAI+QLKI   +T       E   + +++A  A K A+
Sbjct: 120 ANYLKEKRNKKPLLVACDVYRPAAIEQLKILGQQTGIPVYTEEGALNPSSIAENAVKFAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRL  +  +M  I  +   +K      P+  L V+D+ TGQ+A+   +
Sbjct: 180 ENNHDVVIVDTAGRLAIDEQMMNEIKSVHYFIK------PNETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I    + P+ F+  GE +  L+ F  +  +  I
Sbjct: 234 AFNEALNFDGVVLTKLDGDTRGGAALTIRSVVEKPIKFISTGEKMEALDVFYPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|116072341|ref|ZP_01469608.1| Signal recognition particle protein [Synechococcus sp. BL107]
 gi|116064863|gb|EAU70622.1| Signal recognition particle protein [Synechococcus sp. BL107]
          Length = 486

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++     DG  +E+   L+ +D+ + V +  V E+  K   
Sbjct: 2   FDELSARFEDAVKGLRGQDKISETNVDGALKEVRRALLEADVSLPVVKDFVSEVRGKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + +  ++   + P     S  P V+L+ G+ G GKTT   KL
Sbjct: 62  AEVVRGVSPDQKFIQVVHDQLVDVMGGDNAPL-ARASETPTVVLMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + D G + ++   D +R AAI+QLK    +   D       +    +A     +A+A
Sbjct: 121 GLHLKDQGRRSLMVGADVYRPAAIEQLKTLGGQIGVDVFSLGTDAKPEEIAAAGLAKAKA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D L++DTAGRL  ++ +M  + ++   ++      P  VL V+D+  GQ A      
Sbjct: 181 EGYDTLLVDTAGRLQIDTEMMGEMVRIRSAVQ------PDEVLLVVDSMIGQEAAELTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHEQVGITGAVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|57866688|ref|YP_188386.1| signal recognition particle protein [Staphylococcus epidermidis
           RP62A]
 gi|242242520|ref|ZP_04796965.1| signal recognition particle protein [Staphylococcus epidermidis
           W23144]
 gi|57637346|gb|AAW54134.1| signal recognition particle protein [Staphylococcus epidermidis
           RP62A]
 gi|242234028|gb|EES36340.1| signal recognition particle protein [Staphylococcus epidermidis
           W23144]
          Length = 455

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    ++ +     +  E+   L+ +D+   V ++ V+ +  +  
Sbjct: 2   AFEGLSDRLQATMQKMRGKGKVTEADIKTMMREVRLALLEADVNFKVVKEFVKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++   +       +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQEELTSLMGGENTSIKM-ANKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K +L AGD +R AAIDQL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPLLVAGDIYRPAAIDQLQTVGKQIDIPVYSEGDQVSPQQIVENALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P  ++ V+DA TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDETLMNELQEVKEISK------PDEIMLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      +G+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 QSFDEQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|188995069|ref|YP_001929321.1| signal recognition particle protein [Porphyromonas gingivalis ATCC
           33277]
 gi|188594749|dbj|BAG33724.1| signal recognition particle protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 445

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    R+ +       +++   L+ +D+   VA++  + +  K   
Sbjct: 2   FENLSERLDRSFKLLKGEGRITEINVAETLKDVRRALLDADVNYVVAKQFTDLVKEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       + ++  V + +  ++   S   N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTSVRPGELMVKIVHDELAALMGGHSVDINLKGS--PAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +    G + +L A D +R AAI QL I  ++                +A  A  +A+
Sbjct: 120 ANMLKSKQGKRPLLVACDVYRPAAIQQLMILGEQLGVPVYSEPDSKKPVEIARHAIAEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+IIDTAGRL  +  +M  I  +   ++      P+ VL V+D+ TGQ+A+   +
Sbjct: 180 TKGNDVVIIDTAGRLAIDEEMMREIEAIKAAIQ------PNEVLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F  +  +  I
Sbjct: 234 EFNTRLDFDGVVLTKLDGDTRGGAALSIRSIVNKPIKFVGTGEKMEAIDAFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|297156880|gb|ADI06592.1| signal recognition particle protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 518

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  ++++  +   
Sbjct: 2   FDTLSDRLAATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIKQIKERATG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVIKIVNEELVGILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 121 GRWLKGQGHAPLLVACDLQRPNAVNQLSVVAERAGVAVFAPEPGNGVGDPVKVAEDSIEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+ DV+I+DTAGRL  +  LM     +       D   P  VL V+D+  GQ+A+  
Sbjct: 181 AKTKQHDVVIVDTAGRLGIDQELMQQAADI------RDAVRPDEVLFVVDSMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       + F   GE ++D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGRQIMFASNGEKLDDFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I G  D 
Sbjct: 295 RILGMGDM 302


>gi|134301872|ref|YP_001121841.1| signal recognition particle protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|254372796|ref|ZP_04988285.1| hypothetical protein FTCG_00366 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374256|ref|ZP_04989738.1| signal recognition particle protein [Francisella novicida
           GA99-3548]
 gi|134049649|gb|ABO46720.1| signal recognition particle protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151570523|gb|EDN36177.1| hypothetical protein FTCG_00366 [Francisella novicida GA99-3549]
 gi|151571976|gb|EDN37630.1| signal recognition particle protein [Francisella novicida
           GA99-3548]
 gi|328676930|gb|AEB27800.1| Signal recognition particle, subunit Ffh SRP54 [Francisella cf.
           novicida Fx1]
          Length = 458

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 99/305 (32%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L +        ++   L+ +D+ + V +K +  +  K   
Sbjct: 2   FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I K L   + P N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +   A K A+
Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPEDIVTAAIKTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH ++ +M  I ++ ++ K      P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|254443810|ref|ZP_05057286.1| signal recognition particle protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198258118|gb|EDY82426.1| signal recognition particle protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 471

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 150/304 (49%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL   + ++  + +L +       +E+   L+ +D+   VA+  +E +  K   
Sbjct: 2   FESLTDKLTNAMRNLRGTAKLSEENMAEALKEVRAALLSADVHFKVAKTFIERVKEKCVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+++  +++ +  +L   S   +     +P  I++VG+ G GKTT   KL
Sbjct: 62  QDVLKTVTPGQQIIKIINDELTALLGEGSTELS---KKKPLKIMMVGLQGGGKTTTTAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G K  L A D +R AAIDQL+  A +            D  A+  E  ++A A
Sbjct: 119 AKSLKKDGYKPRLVACDVYRPAAIDQLETVARQIDVPCFAKRGTPDVPAIGEEGLREALA 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I DTAGRL  +  L+  I ++ R ++      P  VL V+D   GQ A+   + 
Sbjct: 179 VGDDLIIFDTAGRLQIDDALIEEIKELKRRVQ------PDEVLLVVDGAIGQEAVNVAKT 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG++MTK+DG ARGG  + +    ++P+ F G GE ++D + F     ++ I 
Sbjct: 233 FNEAVQLTGIVMTKLDGDARGGAALSMKEITEVPIKFAGTGEKLDDFDVFYPDRMASRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|149927162|ref|ZP_01915419.1| signal recognition particle protein [Limnobacter sp. MED105]
 gi|149824101|gb|EDM83322.1| signal recognition particle protein [Limnobacter sp. MED105]
          Length = 465

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    R+ +     +  E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLTRVVKNIKGEARITEANTQEMLREVRLALLEADVALPVVKEFINQVKEQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + K++   ++  N   +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  EEVLNSLTPGQALVGIVHKQLIKLIGEKTEEINL-AAQPPVVILMAGLQGAGKTTTTGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + D    KV+  + D +R AAI+QLK  + +  A+F  S+I      +A  A   A+
Sbjct: 121 AKYLKDNLKKKVLTVSADVYRPAAIEQLKTVSGQAGAEFFPSDITQKPVDIALAALNHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A    +
Sbjct: 181 RQFFDVLILDTAGRLGIDEAMMNEIKALHAAVN------PTETLFVIDAMLGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TKMDG ARGG  + +      P+ F+GVGE +   E F     +  I
Sbjct: 235 AFNEALPLTGVVLTKMDGDARGGAALSVRQITGKPIKFMGVGEKLTGFEKFHPDRVAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|289768849|ref|ZP_06528227.1| signal recognition particle protein [Streptomyces lividans TK24]
 gi|289699048|gb|EFD66477.1| signal recognition particle protein [Streptomyces lividans TK24]
          Length = 537

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +   +    E+   L+ +D+ + V +  ++++  +   
Sbjct: 23  FDTLSDRLSATFKSLRGKGRLTEADIDATAREIRIALLEADVALPVVRAFIKKVKERSLG 82

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+VL  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 83  AEVSKALNPAQQVLKIVNEELVGILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 141

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              + + G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 142 GHWLKEQGHSPLLVACDLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEF 201

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  D++I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 202 AKAKVHDLVIVDTAGRLGIDQELMQQAADI------RDAVSPDEILFVVDAMIGQDAVNT 255

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I      P+ F   GE ++D + F     ++
Sbjct: 256 AEAFRDGVGFDGVVLSKLDGDARGGAALSIASVTGKPIMFASNGEKLDDFDAFHPDRMAS 315

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 316 RILDMGDL 323


>gi|78187767|ref|YP_375810.1| cell division transporter substrate-binding protein FtsY
           [Chlorobium luteolum DSM 273]
 gi|78167669|gb|ABB24767.1| signal recognition particle-docking protein FtsY [Chlorobium
           luteolum DSM 273]
          Length = 317

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 125/305 (40%), Positives = 186/305 (60%), Gaps = 6/305 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + +LT+G   T   L+E +  +   +  +DD   EELE++L+ +D+GV +   IVE +  
Sbjct: 9   LSRLTEGLGKTRETLREKLAVVTKGKTEIDDEFLEELENILVGADVGVEMTLDIVEAITL 68

Query: 73  KRYAKDVSVQRVL-YDVSELIHKMLMPLS----KPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +   +    +  L   + + I  ML   S      F+   + RPHVIL+VGVNG GKTT 
Sbjct: 69  RAKRETYRSEEELNRMLLDEISGMLRDSSLEHPVEFDAPLAARPHVILIVGVNGAGKTTS 128

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           + KL+     AG KV++AA DTFR+AA +QL++WA+R     +    G+D A++ ++A  
Sbjct: 129 VAKLASNYERAGKKVVIAAADTFRAAAYEQLQVWAERAGVPLIGQGQGADPASVVFDAVS 188

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A+  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQNA++
Sbjct: 189 SAVARGTDVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQNAVQ 248

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F      TG+I+TK+DGTA+GG ++ I    K+PV ++GVGE I+DL+ F  + F 
Sbjct: 249 QAREFMKFVHVTGIIVTKLDGTAKGGIVLSISRELKLPVKYIGVGEKIDDLQLFDRRQFV 308

Query: 308 AVITG 312
           A + G
Sbjct: 309 AALLG 313


>gi|113476149|ref|YP_722210.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Trichodesmium erythraeum IMS101]
 gi|110167197|gb|ABG51737.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Trichodesmium erythraeum IMS101]
          Length = 483

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L+     +    ++ D        E+   L+ +D+ + V +  + E+ +K   
Sbjct: 2   FEALADRLEVAWKKLRGQDKITDSNIQQALGEVRRALLEADVNLQVVKGFIAEVSSKAKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+ +  V + + +++   + P        P ++L+ G+ G GKTT   KL
Sbjct: 62  ADVLTGVRPDQQFIKIVHDELAQIMGESNAPL-AKADQPPTIVLMAGLQGTGKTTASAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       +L A D +R AAIDQL     +            D   +A +  ++A+A
Sbjct: 121 ALHLRKENRSALLVATDVYRPAAIDQLVTLGKQIDVPVFELGTDIDPVEIAQKGLEKAKA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +D++IIDTAGRL  +  +MA + ++   +K      P   L V+DA TGQ A      
Sbjct: 181 DGIDIVIIDTAGRLQIDQDMMAELARIKAAVK------PQETLLVVDAMTGQEAATLTRT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I+TKMDG  RGG  + +      P+ F+GVGE +  L+PF  +  ++ I 
Sbjct: 235 FNDQIGITGAILTKMDGDTRGGAALSVRRISGQPIKFIGVGEKVEALQPFYPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|326335869|ref|ZP_08202048.1| signal recognition particle protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692013|gb|EGD33973.1| signal recognition particle protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 448

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 148/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+  +  +    ++ +       +E+   L+ +D+  ++A+    ++  K   
Sbjct: 2   FDNLSDKLERALHVLKGHGQITEINVAETLKEVRRALLDADVNYSIAKDFTSKVKAKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +   N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTTLQPGQLMVKIVRDELTELMGGDATGINL--SGNPSVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAIDQL I  ++           ++   +A +  + A+
Sbjct: 120 ANFLKTKKNKKPLLVACDVYRPAAIDQLHIVGEQIGVPVFSERGNNNPVDIAQKGLQYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   +V+IIDTAGRL  +  +M  I ++ + +       P   L V+DA TGQ+A+   +
Sbjct: 180 SNGFNVVIIDTAGRLAADEQMMKEIAEIHKAVN------PQETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V    G+I+TK+DG  RGG  I I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 AFNDVLDFDGVILTKLDGDTRGGAAISIKSVVNKPIKFVGTGEKMDAIDVFYPDRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|261346219|ref|ZP_05973863.1| signal recognition particle protein [Providencia rustigianii DSM
           4541]
 gi|282565525|gb|EFB71060.1| signal recognition particle protein [Providencia rustigianii DSM
           4541]
          Length = 453

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL D        E+   L+ +D+ + V ++ ++++      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTDDNIKDTLREVRMALLEADVALPVVREFIQKVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV+      Q  +  V   + + +   +   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  QDVNKSLTPGQEFIKIVQNELTRAMGEENHQLNLS-AQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K +L  + D +R AAI QL+  A+  S DF  S+     A++  +A K AQ
Sbjct: 121 GKLLKEKQKKKVLVVSADVYRPAAIKQLETLAEAVSIDFFPSDAQEKPASIVQKALKHAQ 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGRLH + ++M  I ++ R++       P   L V+DA TGQ+A    +
Sbjct: 181 LQFYDVLLVDTAGRLHVDEVMMEEIQEIHRIIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF  +  ++ I
Sbjct: 235 AFNEALPLTGIVLTKVDGDARGGAALSIRAITGKPIKFLGVGEKTDALEPFHPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|158312999|ref|YP_001505507.1| signal recognition particle protein [Frankia sp. EAN1pec]
 gi|158108404|gb|ABW10601.1| signal recognition particle protein [Frankia sp. EAN1pec]
          Length = 521

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 147/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +  T +    RL D   +    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FDTLSSRLDKVFTSLRGRGRLTDADIDATAREIRVALLEADVALPVVRGFVAAIRERARG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   +    +     P VIL+ G+ G GKTT+ GKL
Sbjct: 62  AEVSTSLNPAQQVIKIVNEELVAILGGGTTTLRF-AKTPPTVILLAGLQGTGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G   +L A D  R  A++QL++   R   +    E G+   D   +A +A   
Sbjct: 121 GRWLRAQGHTPLLVAADLQRPNAVNQLQVVGQRAGVEVFAPEPGNGVGDPVRVARDALAH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGRL  +  LM     +       D  +P  +L VLDA  GQ+A+  
Sbjct: 181 ARRHVFDVVVVDTAGRLGVDEELMRQAADI------RDAVSPDEILFVLDAMIGQDAVST 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G TG+++TK+DG ARGG  + +      P+ F   GE ++D + F  +  ++
Sbjct: 235 AQAFADGVGFTGVVLTKLDGDARGGAALSVARVTGAPIMFASTGETLDDFDVFHPERMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|126661952|ref|ZP_01732951.1| putative recognition particle-docking protein [Flavobacteria
           bacterium BAL38]
 gi|126625331|gb|EAZ96020.1| putative recognition particle-docking protein [Flavobacteria
           bacterium BAL38]
          Length = 326

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 121/300 (40%), Positives = 182/300 (60%), Gaps = 6/300 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + L KG   T       +T  ++ + ++D  V + LE++L+ SD+GV    KI+E +  +
Sbjct: 23  QSLDKGLEKTKTSFFSKLTKAVAGKSKVDADVLDNLEEILVSSDVGVNTTLKIIERIEER 82

Query: 74  R-YAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
               K +    +   + E I  +L       +  F+   + +P+VI+VVGVNGVGKTT I
Sbjct: 83  VSKDKYLGTDELNGILREEIASLLSETNSGEATQFDIPKNTKPYVIMVVGVNGVGKTTTI 142

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +   AG  V+L A DTFR+AAIDQL+IWADR     V  ++GSD A++A++  + 
Sbjct: 143 GKLAYQFKKAGYNVVLGAADTFRAAAIDQLQIWADRVGVPIVKQQMGSDPASVAFDTLQS 202

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A A+  D++IIDTAGRLHN   LM  + K+ +V++++  + P+ VL VLD +TGQNA  Q
Sbjct: 203 AVAQNADIVIIDTAGRLHNKVGLMNELSKVKKVMQKVVENTPNDVLLVLDGSTGQNAFEQ 262

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F A    + L +TK+DGTA+GG +I I    +IPV ++GVGEGI DL+ F   +F  
Sbjct: 263 AKQFTAATEVSCLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEFVD 322


>gi|183981805|ref|YP_001850096.1| signal recognition particle protein Ffh [Mycobacterium marinum M]
 gi|183175131|gb|ACC40241.1| signal recognition particle protein Ffh [Mycobacterium marinum M]
          Length = 529

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/311 (27%), Positives = 143/311 (45%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D   +    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALQGLRGKGRLTDADIDATAREIRLALLEADVSLPVVRAFVHRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             VS      Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKTT+ GKL
Sbjct: 62  AVVSGALNPAQQVVKIVNEELVGILGGQTRELVF-AKTPPTVVMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++   G   +L A D  R AA++QL++   R          G+   +   +    A A
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGQRAGVPVFAPHPGASPESGPGDPVAVAAA 180

Query: 192 -------KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                  K  DV+I+DTAGRL  +  LMA    + + +       P  VL VLDA  GQ+
Sbjct: 181 GLAEAQAKHFDVVIVDTAGRLGIDEELMAQASAIRKAIN------PDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   + F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVATAQAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|167753009|ref|ZP_02425136.1| hypothetical protein ALIPUT_01273 [Alistipes putredinis DSM 17216]
 gi|167659323|gb|EDS03453.1| hypothetical protein ALIPUT_01273 [Alistipes putredinis DSM 17216]
          Length = 365

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 122/302 (40%), Positives = 182/302 (60%), Gaps = 6/302 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L  G   T   L   +   ++ R  +D  V ++LE++LI SD+GV    KI+E +  +  
Sbjct: 60  LNSGLEKTKTGLFSKLARAVAGRSTIDTQVLDDLEEVLITSDVGVETTVKIIERIEARVA 119

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
             K ++   +   + + I +++      ++ F  D     P+VI+VVGVNG GKTT IGK
Sbjct: 120 RDKYMNTSELQSILRDEIAQLMEESHRSTENFGLDVEEGVPYVIMVVGVNGAGKTTTIGK 179

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +++ AGL V + A DTFR+AAIDQL +WA+R  A  +  E+GSD A++A++  K A 
Sbjct: 180 LAAQLTRAGLNVYIGAADTFRAAAIDQLAVWAERAGATMIRQEMGSDPASVAFDTLKSAV 239

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A K DV++IDTAGRLHN   LM  + K+  V+ ++ P+AP  V+ VLD +TGQNA  Q  
Sbjct: 240 ANKADVVLIDTAGRLHNKVGLMNELTKIRNVMGKVIPNAPQEVMLVLDGSTGQNAFEQAR 299

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      T L +TK+DGTA+GG +I I    +IPV ++G+GEGI+ L+ F  K+F   +
Sbjct: 300 QFTQATQVTSLTITKLDGTAKGGVVIGISDQFRIPVRYIGIGEGIDQLKMFDRKEFVNAL 359

Query: 311 TG 312
            G
Sbjct: 360 FG 361


>gi|291437016|ref|ZP_06576406.1| signal recognition particle protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291339911|gb|EFE66867.1| signal recognition particle protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 537

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +   +    E+   L+ +D+ + V +  ++ +  +   
Sbjct: 23  FDTLSDRLSATFKSLRGKGRLSEADIDATAREIRIALLEADVALPVVRTFIKNVKERALG 82

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+VL  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 83  AEVSKALNPAQQVLKIVNEELVTILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 141

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + + + G   +L A D  R  A++QL + A+R        E G+   D   +A ++   
Sbjct: 142 GRWLKEQGHSPVLVAADLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIDF 201

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  D++I+DTAGRL  +  +M     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 202 ARAKVHDIVIVDTAGRLGIDQEMMQQAADI------RDAVSPDEILFVVDAMIGQDAVNT 255

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I      P+ F   GE ++D + F     ++
Sbjct: 256 AEAFRDGVGFDGVVLSKLDGDARGGAALSIRQVTGKPIMFASNGEKLDDFDAFHPDRMAS 315

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 316 RILDMGDL 323


>gi|16330588|ref|NP_441316.1| cell division protein FtsY [Synechocystis sp. PCC 6803]
 gi|3334191|sp|P73930|FTSY_SYNY3 RecName: Full=Cell division protein ftsY homolog
 gi|1653079|dbj|BAA17996.1| cell division protein; FtsY [Synechocystis sp. PCC 6803]
          Length = 504

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 106/315 (33%), Positives = 184/315 (58%), Gaps = 5/315 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S   V++E + W+RKL +G + T + L   +  I+    L++   EE+E +L+++D+GV 
Sbjct: 188 SAADVSAEEIDWLRKLRQGLSKTRVNLVNQLKSIVGQGPLNEAAVEEIEAILLQADVGVE 247

Query: 62  VAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
               I+    ++L  +    + +++ +   +  ++ + L+ L        +   +V L+ 
Sbjct: 248 ATDYIITTLQDKLREEALPPEQAIEFLKEILRSILDRPLLSLPSAEFAPEAEGLNVWLLT 307

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT IGKL+     +G   ++AA DTFR+AA++Q+K+W +R+    + +    +
Sbjct: 308 GVNGAGKTTTIGKLAFMAKQSGYDCVIAAADTFRAAAVEQVKVWGERSGVPVIANPGQNT 367

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+    AQ++ V++L++DTAGRL N   LM  + K+ R++ +  P+A    L V
Sbjct: 368 DPAAVVYDGISAAQSRNVNLLLVDTAGRLQNKKNLMDELAKIRRIIDKKAPNATVESLLV 427

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN LRQ E+F   A  +G+++TK+DG+A+GG  + +     +P+ F+G GEGI 
Sbjct: 428 LDATLGQNGLRQAEVFAEAAKLSGVVLTKLDGSAKGGVALAVAQQLNLPIRFIGAGEGIE 487

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF + +F   + 
Sbjct: 488 DLRPFSSYEFVEALL 502


>gi|291515239|emb|CBK64449.1| signal recognition particle-docking protein FtsY [Alistipes shahii
           WAL 8301]
          Length = 332

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 121/314 (38%), Positives = 184/314 (58%), Gaps = 6/314 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVA 63
               ++     +L+ G   T   L   +   ++ R  +D GV ++LE++LI SD+GV   
Sbjct: 15  PTGEQAQKQQEELSAGLEKTKTGLFSKLARAVAGRSTIDAGVLDDLEEVLISSDVGVETT 74

Query: 64  QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFS-HRPHVILVVG 118
            KI+  +  +    K ++   +   +   I  ++      S+ F  D +  +P+V++VVG
Sbjct: 75  VKIIRRIEERVARDKYMNASELQSILRGEIATLMEDAHGSSENFGLDATEGQPYVVMVVG 134

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT IGKL+ ++  AG KV + A DTFR+AAIDQL++WADR  A  +  ++GSD 
Sbjct: 135 VNGAGKTTTIGKLAAQLGKAGRKVWIGAADTFRAAAIDQLQVWADRAGATMIRQQMGSDP 194

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++A++    A+A   DV++IDTAGRLHN   LM  + K+  V+ ++ P APH V+ VLD
Sbjct: 195 ASVAFDTLTSAKANGADVVLIDTAGRLHNKVGLMNELTKIRNVMGKVIPGAPHEVMLVLD 254

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            +TGQNA  Q + F      T L +TK+DGTA+GG +I I     IPV ++G+GEGI+ L
Sbjct: 255 GSTGQNAFEQAKQFTQATQVTSLTITKLDGTAKGGVVIGISDQFHIPVRYIGIGEGIDQL 314

Query: 299 EPFVAKDFSAVITG 312
             F  K+F   + G
Sbjct: 315 RIFDRKEFVNALFG 328


>gi|281357053|ref|ZP_06243543.1| signal recognition particle-docking protein FtsY [Victivallis
           vadensis ATCC BAA-548]
 gi|281316611|gb|EFB00635.1| signal recognition particle-docking protein FtsY [Victivallis
           vadensis ATCC BAA-548]
          Length = 309

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 108/304 (35%), Positives = 179/304 (58%), Gaps = 2/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            S      +G   T+ K+   I  + +  +       ++LE +LI++D GV  + +IV +
Sbjct: 2   KSIFSIFKRGLEKTTTKVTRTIAGMFTGIKAHGAASFDDLEAMLIQADFGVPASLRIVGD 61

Query: 70  LLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  +    +++    L  V+ E +  +L    +P N+    +P VIL+VGVNG GKTT I
Sbjct: 62  IRDRYERGEIATDADLVKVAMETVTTILNSRVRPVNFAPEGKPTVILMVGVNGSGKTTTI 121

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ ++     KV+LAA DTFR+AA++QL++W +RT    V ++ G+D A++A++A + 
Sbjct: 122 GKLAARLKAENKKVILAACDTFRAAAVEQLQLWGERTGCQVVSAKHGADPASVAFDATQA 181

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A A+  D L+IDTAGR HN   LM  + K+ R ++++ P APH V   +DA+ G N + Q
Sbjct: 182 ALARGADFLLIDTAGRQHNQKGLMDELAKIRRSIEKVYPGAPHEVWLTVDASLGGNVVNQ 241

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G TGL++TK+DGT +GG ++ +    ++P +F+G GE   DL+PF A+ ++ 
Sbjct: 242 AREFTKTTGVTGLVLTKLDGTGKGGMVVALHQEFELPTFFIGFGEQPEDLQPFSAEYYAG 301

Query: 309 VITG 312
            + G
Sbjct: 302 ALFG 305


>gi|238019717|ref|ZP_04600143.1| hypothetical protein VEIDISOL_01592 [Veillonella dispar ATCC 17748]
 gi|237863758|gb|EEP65048.1| hypothetical protein VEIDISOL_01592 [Veillonella dispar ATCC 17748]
          Length = 450

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+E    +    ++ +        ++   L+ +D+   VA+  V+ +  K  
Sbjct: 2   AFDSLSEKLQEAFQSLKGKGKITEEDVNLALRQVRTALLEADVNFMVAKDFVKSIKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V++ +  +L           S  P +I++VG+ G GKTT  GK
Sbjct: 62  GEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMIS-SKPPTIIMLVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQA 189
           L+  +   G   ML A D +R AAI QL++   +        E    +   +A  A +Q+
Sbjct: 121 LAVYLRKQGKHPMLVAADVYRPAAITQLQVVGKQIDIPVFADETPGANPVDIARRAVEQS 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV+IIDTAGRL  + +LM  +  +   +       PH +L V+D+  GQ+A+   
Sbjct: 181 THMLKDVVIIDTAGRLAIDEVLMDELSNIKAAV------RPHEILLVVDSMIGQDAVTTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G  G+I+TK+DG ARGG  + I     +P+ F GV E ++  + F     ++ 
Sbjct: 235 QTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFYPDRMASR 294

Query: 310 ITGCLDY 316
           I    D+
Sbjct: 295 ILDLGDF 301


>gi|118594463|ref|ZP_01551810.1| Signal recognition particle protein [Methylophilales bacterium
           HTCC2181]
 gi|118440241|gb|EAV46868.1| Signal recognition particle protein [Methylophilales bacterium
           HTCC2181]
          Length = 450

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 147/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
             + + +L+  I  I      +   + D +RE +   LI +D+ + V +  ++++  K  
Sbjct: 2   LENLTDRLQSVIKTIRGQSRFTEENISDAMRE-VRMALIEADVAIPVVKYFIDKVKQKAL 60

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q ++  V + +  ++       +   +  P VIL+ G+ G GKTT  GK
Sbjct: 61  GAEVLSSISPGQAIIKIVQDELTDLMGSERSSLDL-AARPPVVILMAGLQGSGKTTTAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +++   K++L + D +R AAIDQLK  A     D   S        +A +A K A 
Sbjct: 120 LAKILTEEKKKILLVSADVYRPAAIDQLKTLASDLKVDCFNSSAKDKPNDIAKDALKFAS 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I DTAGRL  +  +M  I  + + L       P   L V+DA  GQ+A+   +
Sbjct: 180 KNFHDVIIFDTAGRLGIDEAMMTEIKLLHKTLS------PVETLFVVDAMQGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG +RGG  + +      P+ F+G+ E  N LEPF  +  ++ I
Sbjct: 234 AFGDALPLTGIVLTKLDGDSRGGAALSVKHVTGKPIKFVGISEKPNGLEPFYPERMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|303231613|ref|ZP_07318337.1| signal recognition particle protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513730|gb|EFL55748.1| signal recognition particle protein [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 450

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL++    +    ++ +        ++   L+ +D+   VA+  V+ +  K  
Sbjct: 2   AFDSLSEKLQDAFKSLKGKGKITEEDVNLALRQVRTALLEADVNFMVAKDFVKSIKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V++ +  +L           S  P +I++VG+ G GKTT  GK
Sbjct: 62  GEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMIS-SKPPTIIMLVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQA 189
           L+  +   G   ML A D +R AAI QL++   +        E    +   +A  A +Q+
Sbjct: 121 LAVYLRKQGKHPMLVAADVYRPAAIKQLQVVGKQIDIPVFADETPGANPVDIARRAVEQS 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV+IIDTAGRL  + +LM  +  +   +       PH +L V+D+  GQ+A+   
Sbjct: 181 THMLKDVVIIDTAGRLAIDEVLMDELSNIKAAV------RPHEILLVVDSMIGQDAVTTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G  G+I+TK+DG ARGG  + I     +P+ F GV E ++  + F     ++ 
Sbjct: 235 QTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFYPDRMASR 294

Query: 310 ITGCLDY 316
           I    D+
Sbjct: 295 ILDLGDF 301


>gi|254284240|ref|ZP_04959208.1| signal recognition particle protein [gamma proteobacterium NOR51-B]
 gi|219680443|gb|EED36792.1| signal recognition particle protein [gamma proteobacterium NOR51-B]
          Length = 462

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 142/306 (46%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L   +  +    RL +        E+   L+ +D+ ++V ++  E +  +   
Sbjct: 2   FEGLSQRLSASLKAMAGKSRLTEDNIRDTLREVRMALLEADVALSVVKEFTEAVKQRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q  L  V   +   +   ++  N + +  P V++V G+ G GKTT + KL
Sbjct: 62  AEVAQSLTPGQAFLKVVQSELEATMGSTNESLNLN-TQPPAVVMVAGLQGAGKTTSVAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KV + + D +R AAI QL+  A+   A F  SE      A+   A  QA+
Sbjct: 121 ARHLIEREKKKVTVVSADVYRPAAIKQLETLANEVGARFEPSEEHEQPVAIVQRALAQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGRL  +  +M+ I  +   +       P   L V+DA TGQ+A     
Sbjct: 181 IQFSDVLLVDTAGRLAIDEAMMSEIKALHSAIN------PIETLFVVDAMTGQDAANTAN 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A    TG+I+TK+D   RGG  + +      P+ FLGVGE    L+PF     ++ I
Sbjct: 235 AFGAALPLTGVILTKVDADTRGGAALSVRAITGKPIKFLGVGEKTEALDPFHPDRLASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|299821777|ref|ZP_07053665.1| signal recognition particle protein [Listeria grayi DSM 20601]
 gi|299817442|gb|EFI84678.1| signal recognition particle protein [Listeria grayi DSM 20601]
          Length = 453

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 141/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++ +     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMKSLTPGQQVIKIVQEELTNLMGGEESKIAV-ADKPPTVLMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    + S              +A +A  +A
Sbjct: 121 LANLLRKKYNRKPLLVAADIYRPAAIQQLETLGKQLSMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +   +D +IIDTAGRLH +  LM  + ++  V       +P  +  V+D+ TGQ+A+   
Sbjct: 181 KEDHLDYVIIDTAGRLHIDDALMDELKQVKEV------ASPDEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+     +G+I+TK+DG  RGG  + I      P+  +  GE +  LE F     ++ 
Sbjct: 235 ESFNEQLEVSGVILTKLDGDTRGGAALSIRAVTGKPIKLVATGEKMEALETFHPDRMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|159901134|ref|YP_001547381.1| signal recognition particle protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894173|gb|ABX07253.1| signal recognition particle protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 449

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 151/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +    + S  RL +   +    E+   L+ +D+   V +  V  +  +   
Sbjct: 2   FENLSDRLTDVFNRLGSKGRLTESDVDAGLREVRLALLEADVNFKVVKDFVARVREQAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGK 130
           ++V+      Q+V+  V + +  +L   + P N   +  +P ++++VG+ G GKTT+  K
Sbjct: 62  EEVTKSLTPGQQVIKIVHDELVHLLGDANVPINESKNREQPTIVMLVGLQGAGKTTMAAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  M   G   +L A D +R AAI QL+    + +              +A  A +QA+
Sbjct: 122 LALYMRKKGKTPLLVAADIYRPAAIKQLETLGKQLNIPVYSEGTEVAPPDIAEHALRQAR 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               + +I+DTAGRL  +  LM     + +V++R+ P     ++ V+DA  GQ +++  E
Sbjct: 182 INGNNFVIVDTAGRLQIDERLMTE---LQQVVERIGPT---EIMLVVDAMIGQESVKVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FHA    TGLIMTK+DG ARGG  + +     +P+ FLG GE  + +EPF     +  I
Sbjct: 236 AFHAKVPLTGLIMTKIDGDARGGAALSMREVTGVPIKFLGTGEKTDAIEPFHPDRLAQRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|307330030|ref|ZP_07609181.1| signal recognition particle protein [Streptomyces violaceusniger Tu
           4113]
 gi|306884291|gb|EFN15326.1| signal recognition particle protein [Streptomyces violaceusniger Tu
           4113]
          Length = 514

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  ++++  +   
Sbjct: 2   FDTLSDRLAATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRSFIKQVKERSLG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVIKIVNEELVGILGGEARRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 121 GRWLKGQGHAPLLVACDLQRPNAVNQLSVVAERAGVAVFAPEPGNGVGDPVKVAQDSIEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+ DV+I+DTAGRL  +  LM     +       D   P  VL V+DA  GQ+A+  
Sbjct: 181 ARTKQHDVVIVDTAGRLGIDEELMRQAADI------RDAVRPDEVLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       + F   GE ++D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGRQIMFASNGEKLDDFDAFYPDRMAS 294

Query: 309 VITGCLDY 316
            I G  D 
Sbjct: 295 RILGMGDM 302


>gi|332670012|ref|YP_004453020.1| signal recognition particle protein [Cellulomonas fimi ATCC 484]
 gi|332339050|gb|AEE45633.1| signal recognition particle protein [Cellulomonas fimi ATCC 484]
          Length = 535

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 146/315 (46%), Gaps = 27/315 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L     ++ +  RL     D    E+   L+ +D+ V V +     +  +  +
Sbjct: 2   FATLSDRLTSTFKNLRTKGRLSEADIDATVREIRRALLDADVAVPVVRSFTGAVRERALS 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V++ +  +L   ++P        P VIL+ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVVKIVNDELVAILGGQNRPLAM-AKRPPTVILLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-----------AAA 180
           +  + + G   +L A D  R  A+ QL++  +R          G+              A
Sbjct: 121 ALHLKNQGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPHPGNQGADDYLPAGADPVA 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A +  + A+ ++ DVLI+DTAGRL  ++ LM     +       D   P  VL V+DA 
Sbjct: 181 VARQGLETARTRQHDVLIVDTAGRLGVDAELMQQASDI------RDAVEPDEVLFVIDAM 234

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ+A+   + F    G TG++++K+DG ARGG  + +      P+ F   GE + D E 
Sbjct: 235 IGQDAVATAQAFADGVGFTGVVLSKLDGDARGGAALSVASVTGRPILFASTGEKLTDFEV 294

Query: 301 FVAKDFSAVITGCLD 315
           F     ++ I    D
Sbjct: 295 FHPDRMASRILDMGD 309


>gi|302874777|ref|YP_003843410.1| signal recognition particle protein [Clostridium cellulovorans
           743B]
 gi|307690607|ref|ZP_07633053.1| signal recognition particle protein [Clostridium cellulovorans
           743B]
 gi|302577634|gb|ADL51646.1| signal recognition particle protein [Clostridium cellulovorans
           743B]
          Length = 452

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F     KL+E +  +    +L +       +E++  L+ +D+   + ++ V ++  K  
Sbjct: 2   AFEGLGEKLQETLKKLRGKGKLTEADIKEAMKEVKRALLEADVNFKLVKEFVNKVSDKCL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V++ +  ++           S    +I++VG+ G GKTT+ GK
Sbjct: 62  GSEVLESLTPGQQVIKIVNDELKDLMGSTESELKLS-STGFTIIMLVGLQGAGKTTMAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +     K +L A D +R AAI QL++   +                ++    K A+
Sbjct: 121 LALNLRKKNKKPLLVACDVYRPAAIKQLEVLGKQIDIPVFSMGDKISPVEISKAGIKHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRL  +  LM  +  +   +       P  +L V+D+ TGQ A+   +
Sbjct: 181 DNGNNVVIIDTAGRLQIDEELMEELKNIKADVT------PDEILLVVDSMTGQEAVNVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F       G+++TK+DG  +GG  + I      P+ F+G+GE +NDLE F     ++ I
Sbjct: 235 TFDETLDIDGVVLTKLDGDTKGGAALSIKALTGKPIKFVGLGEKVNDLEVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|331084976|ref|ZP_08334063.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330408676|gb|EGG88141.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 309

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 122/305 (40%), Positives = 177/305 (58%), Gaps = 4/305 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   + ++L  G A T   +  GI  I +    +D+   EELE++LI  D+G+    +I+
Sbjct: 3   EKKGFFKRLVSGLAKTRDNIVSGIDSIFNGFSSIDEDFYEELEEILIMGDLGIHATMQII 62

Query: 68  EELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           E+L  K     +         + + I + +        ++F +R  V+LV+GVNGVGKTT
Sbjct: 63  EDLKAKVKENHIKEPAECKQLLIDSIKEQMSIGDTA--YEFENRTSVVLVIGVNGVGKTT 120

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL+ K+ + G KV+LAA DTFR+AA +QL  WA R  A  +  + G+D AA+ Y+A 
Sbjct: 121 TVGKLAGKLREEGKKVVLAAADTFRAAAGEQLTEWARRADAYMIGGQEGADPAAIVYDAV 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+K DVL+ DTAGRLHN   LM  + K+ R++ R  P A    L VLD TTGQNAL
Sbjct: 181 QAAKARKADVLLCDTAGRLHNKKNLMEELKKINRIIDREFPEAYRETLVVLDGTTGQNAL 240

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F   A  TG+++TK+DGTA+GG  + I     IPV ++GVGE I DL+ F   +F
Sbjct: 241 AQAREFKEAADITGIVLTKLDGTAKGGIAVAIQAELGIPVKYIGVGEHIEDLQKFDPDEF 300

Query: 307 SAVIT 311
              + 
Sbjct: 301 VNALF 305


>gi|240170562|ref|ZP_04749221.1| signal recognition particle protein Ffh [Mycobacterium kansasii
           ATCC 12478]
          Length = 531

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/311 (27%), Positives = 144/311 (46%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D   +    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTSALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFVHRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V++ +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNDELIGILGGQTRELVF-AKTPPTVIMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++   G   +L A D  R AA++QL++   R          G+   +   +    A A
Sbjct: 121 AARLKSQGHTPLLVACDLQRPAAVNQLQVVGQRAGVTVFAPHPGASPESGPGDPVAVAAA 180

Query: 192 -------KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                  K  DV+I+DTAGRL  +  LMA    +       D   P  VL VLDA  GQ+
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAI------RDSIDPDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   + F    G +G+++TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVATAQAFGEGVGFSGVVLTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|148238347|ref|YP_001223734.1| Signal recognition particle GTPase, FtsY [Synechococcus sp. WH
           7803]
 gi|147846886|emb|CAK22437.1| Signal recognition particle GTPase, FtsY [Synechococcus sp. WH
           7803]
          Length = 488

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 111/313 (35%), Positives = 175/313 (55%), Gaps = 5/313 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++V  E + W+ +L +G   T      G+ + +    L   V ++LE LL+R+D GV   
Sbjct: 173 EQVTLEEIDWLGRLRQGLEKTRQGFVSGLLENLGDDPLTPEVLDDLESLLLRADAGVKAT 232

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGV 119
            ++++ L  +   + V     +  + E +  +L    K    D       + +V L+VGV
Sbjct: 233 DQVLDALRKRMNEQVVDPSEGIRFLKEQLRDLLEAPIKSSGVDLLAPQRGQLNVWLMVGV 292

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NGVGKTT +GKL+     +G   M+AA DTFR+AA+ Q+++W DR+    V +    +D 
Sbjct: 293 NGVGKTTTLGKLANLAVRSGYSAMIAAADTFRAAAVQQVQVWGDRSDVPVVANPSDNADP 352

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   A++K  D++++DTAGRL     LM  + K+ RV+ RL P A    L VLD
Sbjct: 353 AAVVFDAIGAARSKGTDLVLVDTAGRLQTKHNLMEELNKIRRVVDRLAPDATVESLLVLD 412

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A+ GQN L+Q   F   AG TG+++TK+DGTARGG  + +     +P+ F+G GEGI DL
Sbjct: 413 ASQGQNGLKQAMAFARAAGLTGVVITKLDGTARGGVALAVASEAGLPIRFIGAGEGIRDL 472

Query: 299 EPFVAKDFSAVIT 311
            PF + +F   + 
Sbjct: 473 RPFNSFEFVEALL 485


>gi|319780681|ref|YP_004140157.1| signal recognition particle protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166569|gb|ADV10107.1| signal recognition particle protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 536

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   +  +     L +        E+   L+ +D+ + V +   +++  K   
Sbjct: 2   FESLQERLGSILNGLTGRGALSEADVSAALREVRRALLEADVALEVVRSFTDKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + +  ML       + + +  P VI++VG+ G GKTT   K+
Sbjct: 62  AAVVKSIKPGQMVVKIVHDELVDMLGAEGVAIDLN-APAPVVIMMVGLQGSGKTTTSAKI 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++S     KV++A+ DT R AA +QL+   ++     +    G     +A  A + A+
Sbjct: 121 AKRLSERQNKKVLMASLDTRRPAAQEQLRQLGEQVKVATLPIIDGQSPVDIARRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +V       +PH +L V D+ TGQ+A+   +
Sbjct: 181 LGGHDVVILDTAGRTHIDEPLMVEMADIKKV------SSPHEILLVADSLTGQDAVNLAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +G GE ++ LE F  K  +  I
Sbjct: 235 SFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGTGEKMDGLEEFHPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|16078658|ref|NP_389477.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309470|ref|ZP_03591317.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313795|ref|ZP_03595600.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318719|ref|ZP_03600013.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221322990|ref|ZP_03604284.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|321315361|ref|YP_004207648.1| signal recognition particle-docking protein FtsY [Bacillus subtilis
           BSn5]
 gi|33517363|sp|P51835|FTSY_BACSU RecName: Full=Cell division protein ftsY homolog
 gi|2633967|emb|CAB13468.1| signal recognition particle (docking protein) [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291484146|dbj|BAI85221.1| signal recognition particle, docking protein [Bacillus subtilis
           subsp. natto BEST195]
 gi|320021635|gb|ADV96621.1| signal recognition particle-docking protein FtsY [Bacillus subtilis
           BSn5]
          Length = 329

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 122/309 (39%), Positives = 185/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+  ++ S   K   G   T    +  + D++S  R++D+   EELE++LI +D+G  
Sbjct: 8   KEKITKQTDSVSEKFKDGLEKTRNSFQNKVNDLVSRYRKVDEDFFEELEEVLISADVGFT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
              ++++EL  +   +++   + +  V SE + ++     +  +       R +VIL+VG
Sbjct: 68  TVMELIDELKKEVKRRNIQDPKEVQSVISEKLVEIYNSGDEQISELNIQDGRLNVILLVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ KM   G  V+LAAGDTFR+ AI+QL++W +RT    +    GSD 
Sbjct: 128 VNGVGKTTTIGKLAHKMKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQTAGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+A+  DVLI DTAGRL N   LM  + K+ RV++R  P APH VL  LD
Sbjct: 188 AAVIYDAVHAAKARNADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLALD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I     IPV  +G+GE ++DL
Sbjct: 248 ATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVDDL 307

Query: 299 EPFVAKDFS 307
           + F  + + 
Sbjct: 308 QEFDPESYV 316


>gi|325661269|ref|ZP_08149896.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325472776|gb|EGC75987.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 309

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 123/305 (40%), Positives = 177/305 (58%), Gaps = 4/305 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   + ++L  G A T   +  GI  I +    +D+   EELE++LI  D+G+    KI+
Sbjct: 3   EKKGFFKRLVSGLAKTRDNIVSGIDSIFNGFSSIDEDFYEELEEILIMGDLGIHATMKII 62

Query: 68  EELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           E+L  K     +         + + I + +        ++F +R  V+LV+GVNGVGKTT
Sbjct: 63  EDLKAKVKENHIKEPAECKQLLIDSIKEQMSIGDTA--YEFENRTSVVLVIGVNGVGKTT 120

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL+ K+ + G KV+LAA DTFR+AA +QL  WA R  A  +  + G+D AA+ Y+A 
Sbjct: 121 TVGKLAGKLREEGKKVVLAAADTFRAAAGEQLTEWARRADAYMIGGQEGADPAAIVYDAV 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+K DVL+ DTAGRLHN   LM  + K+ R++ R  P A    L VLD TTGQNAL
Sbjct: 181 QAAKARKADVLLCDTAGRLHNKKNLMEELKKINRIIDREFPEAYRETLVVLDGTTGQNAL 240

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F   A  TG+++TK+DGTA+GG  + I     IPV ++GVGE I DL+ F   +F
Sbjct: 241 AQAREFKEAADITGIVLTKLDGTAKGGIAVAIQSELGIPVKYIGVGEHIEDLQKFDPDEF 300

Query: 307 SAVIT 311
              + 
Sbjct: 301 VNALF 305


>gi|229019043|ref|ZP_04175883.1| Cell division protein ftsY [Bacillus cereus AH1273]
 gi|229025288|ref|ZP_04181708.1| Cell division protein ftsY [Bacillus cereus AH1272]
 gi|229162783|ref|ZP_04290740.1| Cell division protein ftsY [Bacillus cereus R309803]
 gi|228620665|gb|EEK77534.1| Cell division protein ftsY [Bacillus cereus R309803]
 gi|228736041|gb|EEL86616.1| Cell division protein ftsY [Bacillus cereus AH1272]
 gi|228742245|gb|EEL92405.1| Cell division protein ftsY [Bacillus cereus AH1273]
          Length = 332

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 122/313 (38%), Positives = 193/313 (61%), Gaps = 12/313 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV+
Sbjct: 11  KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKIDEDFFEELEEILISADVGVS 70

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-------HVI 114
              +++++L  +   +++       +V  +I + L+ + K  + DFS+          V+
Sbjct: 71  TVMELIDQLKEEVQRRNIQDP---KEVQAVISEKLVGIYKG-DSDFSNEVNIQEDQLTVV 126

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L VGVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    
Sbjct: 127 LFVGVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGS 186

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           GSD AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL
Sbjct: 187 GSDPAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVL 246

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE 
Sbjct: 247 LVIDATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQ 306

Query: 295 INDLEPFVAKDFS 307
           ++DL+ F  + + 
Sbjct: 307 MDDLQQFDPEQYV 319


>gi|328541720|ref|YP_004301829.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA, ffh family
           [polymorphum gilvum SL003B-26A1]
 gi|326411472|gb|ADZ68535.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA, ffh family
           [Polymorphum gilvum SL003B-26A1]
          Length = 520

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +     L +        E+   LI +D+ + V +   +++  +   
Sbjct: 2   FESLSDRLSGILDKLTGRGALSESDVNEALREVRRALIEADVALPVVRSFTDKVRVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + + +ML   ++P + + +  P  I++VG+ G GKTT   K+
Sbjct: 62  AEVVKSVTPGQMVVKIVHDQLVEMLGADAEPIDLN-APAPVAIMMVGLQGSGKTTTTAKI 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++++    + + +A+ DT R AA +QLK+  ++   D +    G     +A  A + A+
Sbjct: 121 ARRLATRDKRRVLMASLDTRRPAAQEQLKVLGEQNGIDTLPIVAGQGPVDIARRAIQAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR+H +  LM  + ++           PH +L V DA TGQ+A+    
Sbjct: 181 LGGYDVVMLDTAGRIHIDEALMHEMAEIKAATN------PHEILLVADALTGQDAVNLAT 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+ +T+MDG  RGG  + +      PV  +G GE    LE F  +  +  I
Sbjct: 235 SFDERVGITGIALTRMDGDGRGGAALSMRAVTGKPVKIIGTGEKAEALEDFHPRRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|313112008|ref|ZP_07797795.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           39016]
 gi|310884297|gb|EFQ42891.1| signal recognition particle receptor FtsY [Pseudomonas aeruginosa
           39016]
          Length = 288

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 117/260 (45%), Positives = 169/260 (65%), Gaps = 1/260 (0%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP 111
           L+ +D+GV     IV+ L  +   K+++    LY  + E +  +L P+ +P   D +  P
Sbjct: 23  LLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREP 82

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +VILVVGVNGVGKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     + 
Sbjct: 83  YVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIA 142

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G+D+A++ ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH
Sbjct: 143 QHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPH 202

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            VL VLDA TGQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GV
Sbjct: 203 EVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGV 262

Query: 292 GEGINDLEPFVAKDFSAVIT 311
           GEGI+DL  F A  F   + 
Sbjct: 263 GEGIDDLRTFEADAFVQALF 282


>gi|294085381|ref|YP_003552141.1| cell division protein ftsY [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664956|gb|ADE40057.1| cell division protein ftsY [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 309

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 130/306 (42%), Positives = 201/306 (65%), Gaps = 3/306 (0%)

Query: 11  LSWIRKLTKGFASTSLKLK---EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +SW +KL +G   ++ K+      ++++    R+D    EE+ED LI +D+G   AQ++ 
Sbjct: 1   MSWFKKLKEGLGKSTSKVTASLSSLSNLFGGARIDASSLEEVEDALISADLGTTSAQRLA 60

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + +   ++   +    +   +++ I ++L P+++    D +H PHV+L+VGVNG GKTT 
Sbjct: 61  DRMRRHKFEGPIDSDTLGQALADGITEILEPVAQKLEIDAAHAPHVVLLVGVNGSGKTTT 120

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+++  D G  VMLAAGDTFR+AAI+QL+IW  RT  + +    G DAAALAYEA +
Sbjct: 121 AGKLAQQWRDEGKSVMLAAGDTFRAAAIEQLQIWGARTGTEVIAGAQGGDAAALAYEALE 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+A  +DVLIIDTAGRL N + LM  + K++RV+++LD  APH  + +LD T GQNA+ 
Sbjct: 181 KAKAANIDVLIIDTAGRLQNRTELMDELAKIVRVMRKLDASAPHDSVIILDGTVGQNAIS 240

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QV+ F  VA  TGLI+TK+DG+A+GG ++ +     +PV+ +GVGE  +DL+PF A +F+
Sbjct: 241 QVKAFREVADVTGLIVTKLDGSAKGGVVVALAEEFGLPVHAVGVGEQADDLQPFAAAEFA 300

Query: 308 AVITGC 313
             + G 
Sbjct: 301 KALVGI 306


>gi|300780916|ref|ZP_07090770.1| signal recognition particle protein [Corynebacterium genitalium
           ATCC 33030]
 gi|300532623|gb|EFK53684.1| signal recognition particle protein [Corynebacterium genitalium
           ATCC 33030]
          Length = 580

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 142/319 (44%), Gaps = 30/319 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+  +  +    +L +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FESLSDRLQTALKGLRGKGKLTEEDINATAREIRIALLEADVSLTVVRAFIKRVKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DVS      Q+V+  V E +  +L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  ADVSEALNPAQQVIKIVDEELTNILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           +  +   G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 ALHLKKQGHAPMLVACDLQRPGAVQQLQIVGERAGVRTFAPDPGTSLDSAEHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             ++A  +  +A+    DV+IIDTAGRL  +  LM     +   +       P  VL V+
Sbjct: 181 PVSVAQASIDEARRTNADVVIIDTAGRLGIDETLMTQARNIRNAVN------PDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   + F      TG+++TK+DG ARGG  + I      P+ F   GE + D
Sbjct: 235 DAMIGQDAVTTAQAFADGVDFTGVVLTKLDGDARGGAALSIREVTGKPILFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLDY 316
            + F     S+ I G  D 
Sbjct: 295 FDVFHPDRMSSRILGMGDL 313


>gi|307297854|ref|ZP_07577660.1| signal recognition particle-docking protein FtsY [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306917114|gb|EFN47496.1| signal recognition particle-docking protein FtsY [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 303

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 127/310 (40%), Positives = 193/310 (62%), Gaps = 8/310 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +    +L  G   T     + +  ++S   LD    EE+E+LLI SD+G   A++++E L
Sbjct: 1   MGVFSRLNDGLKRTREGFFKRVRKLLSFESLDSDSLEEIEELLILSDMGSETAEEVIEAL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++       +  +  + E++ ++L     PF    + RP+V+ VVGVNG GKTT IGK
Sbjct: 61  KDRKD----KGKEPIEVLKEVLVEILDI---PFEVPQA-RPYVVSVVGVNGTGKTTTIGK 112

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LSK  S  G KV+LAA DTFR+AA++QL+IW++R + DF+    G+D+AA+A++A + A 
Sbjct: 113 LSKLYSSNGNKVVLAACDTFRAAAVEQLRIWSERANVDFISQGQGADSAAVAFDAVRHAV 172

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +K  DV+I+DTAGRLH  S LM  + K+ RV+ +  P AP+ VL V+DATTGQN L Q +
Sbjct: 173 SKGKDVVIVDTAGRLHTRSNLMEELKKVHRVIGKASPGAPNEVLLVIDATTGQNGLVQAK 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DGTA+GG +  IV    IPV ++GVGE  +DL+PF +++F   +
Sbjct: 233 KFKEAVDVTGIVLTKLDGTAKGGIIFAIVKELGIPVRYIGVGEKEDDLKPFDSREFVNAL 292

Query: 311 TGCLDYGEEK 320
               + G E+
Sbjct: 293 LSTGEEGSEE 302


>gi|70726678|ref|YP_253592.1| hypothetical protein SH1677 [Staphylococcus haemolyticus JCSC1435]
 gi|68447402|dbj|BAE04986.1| ffh [Staphylococcus haemolyticus JCSC1435]
          Length = 456

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  I  +    ++ +     +  E+   L+ +D+   V ++ V+ +  +  
Sbjct: 2   AFEGLSDRLQATIQRMRGKGKVTEADIKAMMREVRLALLEADVNFKVVKEFVKTVSDRAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + +++   +       +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQDELTQLMGGENSTIKM-ANKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML A D +R AAI+QL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQLDVPVYSEGDQVKPQQIVENALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P+ ++ V+DA TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------PNEIMLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 QSFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKMDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|303230196|ref|ZP_07316964.1| signal recognition particle protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515122|gb|EFL57096.1| signal recognition particle protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 450

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL++    +    ++ +        ++   L+ +D+   VA+  V+ +  K  
Sbjct: 2   AFDSLSEKLQDAFKSLKGKGKITEEDVNLALRQVRTALLEADVNFMVAKDFVKSIKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V++ +  +L           S  P +I++VG+ G GKTT  GK
Sbjct: 62  GEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMIS-SKPPTIIMLVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQA 189
           L+  +   G   ML A D +R AAI QL++   +        E    +   +A  A +Q+
Sbjct: 121 LAVYLRKQGKHPMLVAADVYRPAAIKQLQVVGKQIDIPVFADETPGANPVDIARRAVEQS 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV+IIDTAGRL  + +LM  +  +   +       PH +L V+D+  GQ+A+   
Sbjct: 181 THMLKDVVIIDTAGRLAIDEVLMDELSNIKAAV------RPHEILLVVDSMIGQDAVTTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G  G+I+TK+DG ARGG  + I     +P+ F GV E ++  + F     ++ 
Sbjct: 235 QTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFYPDRMASR 294

Query: 310 ITGCLDY 316
           I    D+
Sbjct: 295 ILDLGDF 301


>gi|317487348|ref|ZP_07946140.1| signal recognition particle-docking protein FtsY [Bilophila
           wadsworthia 3_1_6]
 gi|316921398|gb|EFV42692.1| signal recognition particle-docking protein FtsY [Bilophila
           wadsworthia 3_1_6]
          Length = 514

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 120/313 (38%), Positives = 182/313 (58%), Gaps = 5/313 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           +  +    E      KL +G   T  +L +G++ + +S   L     +ELE+L I +D+G
Sbjct: 203 LDLEDEEDERNRIFLKLHQGLERTREQLGKGLSTLFASHGDLSADFWDELEELFIMADMG 262

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVG 118
           V  A ++ + L ++  A   +    L     L+   L  + + P      + P V+L++G
Sbjct: 263 VEAATELCKRLKSRARAASATTPEELRP---LLAAELEDIFRIPRRVVAVNPPEVVLIIG 319

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT I KL+ +    G KV+LAA DTFR+AA++QL IWA+RT + F      +D 
Sbjct: 320 VNGVGKTTTIAKLAYRARMQGKKVLLAAADTFRAAAVEQLGIWAERTGSGFHSKGQDADP 379

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+A+EA   A   + D+L IDTAGRLH  S LM  + K+  V+ R  P APH  + ++D
Sbjct: 380 AAVAWEAMDVAIRDQYDILFIDTAGRLHTKSNLMDELHKIREVIARKHPGAPHRSILIVD 439

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL+Q ++F   AG   LI+TK+DGTA+GG  + + + + IP+ ++G+GE + DL
Sbjct: 440 ATTGQNALQQTKIFKEAAGIDELILTKLDGTAKGGVAVAVSMQYGIPITYVGLGEKMEDL 499

Query: 299 EPFVAKDFSAVIT 311
            PF   DF+  + 
Sbjct: 500 RPFNGDDFAKALL 512


>gi|294789764|ref|ZP_06754994.1| signal recognition particle protein [Simonsiella muelleri ATCC
           29453]
 gi|294482270|gb|EFG29967.1| signal recognition particle protein [Simonsiella muelleri ATCC
           29453]
          Length = 454

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 148/306 (48%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +  +   DI    +L +D ++E L +    L+ +D+ + + +  V  +  +   
Sbjct: 2   LDNLTKRFSKIFKDIRGQSKLTEDNIKEALREVRLALLEADVALPIVKDFVNSVKERALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q     V++ +  ++   +   N   +  P  IL+ G+ G GKTT +GKL
Sbjct: 62  HEIADNLTPDQAFFGIVNQALIDLMGKENTSLNLSTT-PPATILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLKVM--LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +K + D   K    + + D +R AAI+QLK+ A++   DF  S        +  +A   A
Sbjct: 121 AKLIKDQDKKKKILVVSADVYRPAAIEQLKLLAEQVGVDFFPSNTTQQPVQIVRDAQNYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   
Sbjct: 181 KKHFYDVLMVDTAGRLAIDIEMMIEIRAIHSAIN------PIETLFVIDAMLGQDAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+++TKMDG ARGG  + +      P+ F+GVGE IN LEPF     ++ 
Sbjct: 235 QAFNETLPLTGVVLTKMDGDARGGAALSVRQITGKPIKFIGVGEKINGLEPFYPDRIASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|300722260|ref|YP_003711544.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628761|emb|CBJ89339.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Xenorhabdus
           nematophila ATCC 19061]
          Length = 453

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   + K +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVQNELIKAMGEVNSELNLS-AQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K +L  + D +R AAI QL+  ++    DF  S+       +  +A + A+
Sbjct: 121 GKLLKEKNKKKVLVVSADVYRPAAIKQLETLSETVGIDFFPSDPQEKPIDIVNKAIQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL+IDTAGRLH +  +M  I  +   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLIDTAGRLHVDEAMMDEIKAVHAAVK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFYPDRIASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|89256557|ref|YP_513919.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. holarctica LVS]
 gi|115314989|ref|YP_763712.1| type II general secretory pathway signal recognition particle
           protein Ffh [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502677|ref|YP_001428742.1| signal recognition particle protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010983|ref|ZP_02275914.1| signal recognition particle protein [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254369456|ref|ZP_04985468.1| signal recognition particle protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953088|ref|ZP_06557709.1| signal recognition particle protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313694|ref|ZP_06804276.1| signal recognition particle protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144388|emb|CAJ79678.1| signal recognition particle protein, Ffh [Francisella tularensis
           subsp. holarctica LVS]
 gi|115129888|gb|ABI83075.1| Sec family Type II general secretory pathway signal recognition
           particle protein Ffh [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253280|gb|ABU61786.1| signal recognition particle protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122406|gb|EDO66546.1| signal recognition particle protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 458

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L +        ++   L+ +D+ + V +K +  +  K   
Sbjct: 2   FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I K L   + P N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+   +  + +F  S+       +   A K A+
Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLVNSLNVEFFESDASQQPEDIVTAAIKTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH ++ +M  I ++ ++ K      P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALEPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|223043736|ref|ZP_03613779.1| signal recognition particle protein [Staphylococcus capitis SK14]
 gi|222442833|gb|EEE48935.1| signal recognition particle protein [Staphylococcus capitis SK14]
          Length = 455

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  +    ++ +     +  E+   L+ +D+   V ++ V+ +  +  
Sbjct: 2   AFEGLSDRLQATMQKMRGKGKVTEADIKTMMREVRLALLEADVNFKVVKEFVKTVSDRAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++   +       +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQEELTSLMGGENTSIKM-ANKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K ML AGD +R AAIDQL+    +                +   A K A
Sbjct: 121 LALLMRKKYNKKPMLVAGDIYRPAAIDQLQTVGKQIDIPVYSEGDQVQPQQIVENALKHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM  + ++  + K      P  ++ V+DA TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMNELQEVKEISK------PDEIMLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      +G+ +TK+DG  RGG  + I    + P+ F+G+ E ++ LE F  +  ++ 
Sbjct: 235 QSFDDQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|25028521|ref|NP_738575.1| putative signal recognition particle protein [Corynebacterium
           efficiens YS-314]
 gi|259507575|ref|ZP_05750475.1| signal recognition particle protein [Corynebacterium efficiens
           YS-314]
 gi|23493806|dbj|BAC18775.1| putative signal recognition particle protein [Corynebacterium
           efficiens YS-314]
 gi|259164849|gb|EEW49403.1| signal recognition particle protein [Corynebacterium efficiens
           YS-314]
          Length = 540

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 144/318 (45%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    +L +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLNNALKGLRGKGKLTEADINATAREIRLALLEADVSLTVVRSFISRIKERAAG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++         P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVIKIVNEELVQILGGETRRLQL-AKTPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           SK ++  G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 SKHLAAQGHTPMLVACDLQRPGAVQQLQIVGERAGVTTFAPDPGTSIDSYEHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+A    ++A+  + D++I+DTAGRL  +  LM     +   +       P  VL V+
Sbjct: 181 PVAVAQAGIEEAKRTQHDIVIVDTAGRLGIDETLMTQARNIRDAIN------PDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+A+   E F      TG+++TK+DG ARGG  + I      P+ F   GE + D
Sbjct: 235 DSMIGQDAVDTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F  +  ++ I G  D
Sbjct: 295 FDVFHPERMASRILGMGD 312


>gi|47570280|ref|ZP_00240929.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           G9241]
 gi|229157423|ref|ZP_04285501.1| Cell division protein ftsY [Bacillus cereus ATCC 4342]
 gi|47553044|gb|EAL11446.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           G9241]
 gi|228626150|gb|EEK82899.1| Cell division protein ftsY [Bacillus cereus ATCC 4342]
          Length = 329

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 184/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D+    R++D+   EELE++LI +D+GV+
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVS 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVG 118
              +++++L  +   +++   R +  V       +      F  +         V+L VG
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPREVQAVISEKLIEIYKGDSDFTNEINMQKDGLTVVLFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD 
Sbjct: 128 VNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+D
Sbjct: 188 AAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVID 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL
Sbjct: 248 ATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307

Query: 299 EPFVAKDFS 307
           + F  + + 
Sbjct: 308 QQFDPEQYV 316


>gi|291545208|emb|CBL18317.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ruminococcus
           sp. 18P13]
          Length = 460

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S KL      + S  +L +  V++   E+   L+ +D+   V +  V ++  +  
Sbjct: 2   AFEGLSEKLNHVFKKLKSRGKLSESDVKDAMREVRMALLEADVSYKVVKDFVAKVSQRCV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V++ +  ++   +   N   S  P VI++ G+ G GKTT   K
Sbjct: 62  GEEVLSSLTPAQQVVKIVNDELIALMGNDNARINMP-SKPPCVIMMCGLQGSGKTTHAAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +   G + +L A D +R AAI+QL +  ++                ++ +A + A+
Sbjct: 121 LAKYLKREGHRPLLVACDIYRPAAINQLMVVGEKAGVKVFEMGQID-PVVISTQAMRYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRLH +  LM  + ++   ++      P+ ++ V+DA TGQ+A+   +
Sbjct: 180 DYGHDVVILDTAGRLHIDEKLMDELKQIKAKVE------PNEIMLVVDAMTGQDAVNVAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G   ++M+K+D   RGG  + ++     P+ F+G+GE +++ E F  +  ++ I
Sbjct: 234 AFDEALGIDSVLMSKLDSDTRGGAALSVLAVTGKPIKFVGMGEKLDEFERFHPERMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|326318567|ref|YP_004236239.1| signal recognition particle-docking protein FtsY [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375403|gb|ADX47672.1| signal recognition particle-docking protein FtsY [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 431

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 121/308 (39%), Positives = 181/308 (58%), Gaps = 7/308 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +   E   W+ +L  G   T       I  + +  ++ D + +ELE+ L+ +D GV   +
Sbjct: 129 EAGQERKGWLDRLKNGLRKT----GTSIATVFTGTQISDALYDELEEALLMADTGVKATE 184

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            ++++L  +      +    +   +++ +  +L PL KP      H P VI+V GVNG G
Sbjct: 185 HLLQDLRQRVKEARATDPAAVKGLLADALADLLRPLEKPLEIG-RHTPTVIMVAGVNGAG 243

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL++ ++  G  V+LAA DTFR+AA +QL +WADR + + V S+ G D AA+++
Sbjct: 244 KTTSIGKLTRHLATEGAAVLLAAADTFRAAAREQLGVWADRNTVEIV-SQEGGDPAAVSF 302

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A    +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQ
Sbjct: 303 DAVSAGKARGKDVVLVDTAGRLPTQLHLMQELQKIKRVITKADGTAPHEVLLVIDGNTGQ 362

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QV  F      TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DLE F A
Sbjct: 363 NALAQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKLEDLETFSA 422

Query: 304 KDFSAVIT 311
           ++F+  + 
Sbjct: 423 REFAQALL 430


>gi|294500963|ref|YP_003564663.1| signal recognition particle-docking protein FtsY [Bacillus
           megaterium QM B1551]
 gi|295706309|ref|YP_003599384.1| signal recognition particle-docking protein FtsY [Bacillus
           megaterium DSM 319]
 gi|294350900|gb|ADE71229.1| signal recognition particle-docking protein FtsY [Bacillus
           megaterium QM B1551]
 gi|294803968|gb|ADF41034.1| signal recognition particle-docking protein FtsY [Bacillus
           megaterium DSM 319]
          Length = 332

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 125/309 (40%), Positives = 192/309 (62%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+  ++ S  +K   G + T     E + D++S  R++D+   EELE++LI +D+GVA
Sbjct: 8   KEKITMQTDSVTQKFKDGLSKTRNSFSERVNDLVSRYRQVDEEFFEELEEILISADVGVA 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRP--HVILVVG 118
               ++++L ++   +++   + +  V SE +  +     +        +    VIL VG
Sbjct: 68  TVLDLIDDLKSEVKRRNIKDPQDVQAVISEKLIDIYESGEEQIGELNMQQNDLTVILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++ K    G KV++AAGDTFR+ AI+QL++W +R   D +    GSD 
Sbjct: 128 VNGVGKTTTIGKIAHKFKQEGKKVVMAAGDTFRAGAIEQLEVWGERVGVDVIKQSAGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+K DVL+ DTAGRL N   LM  + K+ RV++R  P APH VL VLD
Sbjct: 188 AAVMYDAVQSAKARKADVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVLLVLD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL Q + F      TG+++TK+DGTA+GG ++ I    K+PV F+G+GE ++DL
Sbjct: 248 ATTGQNALSQAKTFSEATNVTGIVLTKLDGTAKGGIVLAIRNELKLPVKFVGLGEKVDDL 307

Query: 299 EPFVAKDFS 307
           +PF  + + 
Sbjct: 308 QPFDTEQYI 316


>gi|297559205|ref|YP_003678179.1| signal recognition particle protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843653|gb|ADH65673.1| signal recognition particle protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 531

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 144/307 (46%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L    + +    RL +        E+   L+ +D+ + V ++ +  +  +   
Sbjct: 2   FETLSDRLTSVFSSLRGKGRLSEEDINATAREIRLALLEADVALPVVREFIARIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  EEVSKALNPAQQVIKIVNEELVGILGGETRQIRF-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++ ++      +L A D  R  A+ QL++  +R        E G+   D   +A ++ + 
Sbjct: 121 ARWLAADRNTPLLVAADLQRPNAVTQLQVVGERAGTPVFAPEPGNGVGDPVQVARQSVEH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    +V+IIDTAGRL  +S +M     +       D   P  +L V+DA  GQ+A+  
Sbjct: 181 ARRNNHNVVIIDTAGRLGVDSEMMQQAADI------RDAVNPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G   + +TK+DG ARGG  + I      P+ F   GE + D + F     ++
Sbjct: 235 AQAFLDGVGYDAVALTKLDGDARGGAALSIRHITGRPIMFASTGEKLEDFDLFHPDRMAS 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|307151061|ref|YP_003886445.1| signal recognition particle protein [Cyanothece sp. PCC 7822]
 gi|306981289|gb|ADN13170.1| signal recognition particle protein [Cyanothece sp. PCC 7822]
          Length = 487

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++    +    ++         +E+   LI +D+ + V +  + E+  +   
Sbjct: 2   FDALAERLEDAWKKLRGQDKISQSNIQDALKEVRRALISADVNLQVVKNFIAEVEKQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + K++   + P     S  P VIL+ G+ G GKTT   KL
Sbjct: 62  AEVISGVNPGQQFIKIVYDQLVKVMGESNVPL-AQASTPPTVILMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       ++ A D +R AAIDQL     +           +D   +A +  ++A+ 
Sbjct: 121 ALFLRKENRSCLMVATDVYRPAAIDQLITLGQQIDVPVFELGTEADPVEIARQGVQKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VD +IIDTAGRL  +  +MA + ++   +K      PH  L V+D+ TGQ A      
Sbjct: 181 LGVDTVIIDTAGRLQIDEDMMAELARIKATVK------PHDTLLVVDSMTGQEAATLTHT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TK+DG  RGG  + +      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FHEQIGITGAILTKLDGDTRGGAALSVRQVSGQPIKFVGVGEKVEALQPFYPDRMASRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 NMGD 298


>gi|297181002|gb|ADI17203.1| hypothetical protein [uncultured delta proteobacterium
           HF0070_10I02]
          Length = 345

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 128/311 (41%), Positives = 180/311 (57%), Gaps = 8/311 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +NQ++   +         G   T   L  G+    +S   +D   E LE+ LI +D+GV 
Sbjct: 33  TNQQIPELTDDGF---WAGLGRTRTALASGLGHFFNSDANEDKRFEALEEALIGADVGVK 89

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVN 120
            A  IVE +  K    D +   VL   + L  ++L  L+   +       P VILVVGVN
Sbjct: 90  TAMNIVEAV--KAECADPADPEVLR--AALKKQLLSRLTAETSIAVREDGPLVILVVGVN 145

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+ + ++ G KV+LAAGDTFR+ AI+QL++W +R +   +  + G+D AA
Sbjct: 146 GSGKTTTIGKLAHQYTEQGKKVLLAAGDTFRAGAIEQLQVWGERVNIPVIAHQEGADPAA 205

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+  +   A+K+DV+I DTAGRL   S LM  + K+ RV+ +  P APH VL VLDAT
Sbjct: 206 VIYDGIQAGIARKMDVVICDTAGRLQAQSQLMDELAKVARVMNKALPGAPHEVLLVLDAT 265

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQNAL Q + F  + G TG+ +TK+DGTARGG ++ +     IPV  +G+GEGI DL P
Sbjct: 266 IGQNALSQAKAFKDLVGVTGVALTKLDGTARGGVVVAVQAEMGIPVKLVGLGEGIGDLRP 325

Query: 301 FVAKDFSAVIT 311
           F A  F   + 
Sbjct: 326 FSATPFVDALL 336


>gi|52141632|ref|YP_085188.1| recognition particle-docking protein [Bacillus cereus E33L]
 gi|118479069|ref|YP_896220.1| signal recognition particle-docking protein FtsY [Bacillus
           thuringiensis str. Al Hakam]
 gi|196042326|ref|ZP_03109602.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           NVH0597-99]
 gi|225865828|ref|YP_002751206.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           03BB102]
 gi|228916484|ref|ZP_04080050.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229186087|ref|ZP_04313256.1| Cell division protein ftsY [Bacillus cereus BGSC 6E1]
 gi|301055337|ref|YP_003793548.1| recognition particle-docking protein [Bacillus anthracis CI]
 gi|51975101|gb|AAU16651.1| recognition particle-docking protein [Bacillus cereus E33L]
 gi|118418294|gb|ABK86713.1| signal recognition particle-docking protein FtsY [Bacillus
           thuringiensis str. Al Hakam]
 gi|196026848|gb|EDX65479.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           NVH0597-99]
 gi|225786630|gb|ACO26847.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           03BB102]
 gi|228597263|gb|EEK54914.1| Cell division protein ftsY [Bacillus cereus BGSC 6E1]
 gi|228843063|gb|EEM88145.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300377506|gb|ADK06410.1| recognition particle-docking protein [Bacillus cereus biovar
           anthracis str. CI]
          Length = 329

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 184/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D+    R++D+   EELE++LI +D+GV+
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVS 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVG 118
              +++++L  +   +++   R +  V       +      F  +         V+L VG
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPREVQAVISEKLIEIYKGDSDFTNEVNMQKDGLTVVLFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD 
Sbjct: 128 VNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+D
Sbjct: 188 AAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVID 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL
Sbjct: 248 ATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307

Query: 299 EPFVAKDFS 307
           + F  + + 
Sbjct: 308 QQFDPEQYV 316


>gi|298386283|ref|ZP_06995839.1| signal recognition particle protein [Bacteroides sp. 1_1_14]
 gi|298260660|gb|EFI03528.1| signal recognition particle protein [Bacteroides sp. 1_1_14]
          Length = 440

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 149/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKTFTDTVKEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +   N +   RP VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGETVEINLE--SRPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++ A++            +   +A  A ++A+
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLRVLAEQIEVPMYSELDSKNPVEIAQHAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  +   +       P  +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDLVIVDTAGRLAVDEQMMNEITAIKEAIN------PDEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNVRLDFNGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|302038373|ref|YP_003798695.1| signal recognition particle protein [Candidatus Nitrospira
           defluvii]
 gi|300606437|emb|CBK42770.1| Signal recognition particle protein [Candidatus Nitrospira
           defluvii]
          Length = 449

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 145/308 (47%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + S K +  +  +     L +       +E+   L+ +D+   V +  ++ +  K   
Sbjct: 2   LDALSEKFERILKKLRGQGVLTEDNIAEALKEVRLALLEADVNFKVVKDFLDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V        +V+  V + +  M+       +   S  P +I++VG+ G GKTT  GKL
Sbjct: 62  QEVLKSLTPGHQVVKVVWDELRGMMGGERSGISL-ASRPPTIIMMVGLQGAGKTTTSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA----LAYEAFK 187
           ++     G +V+L A D  R AA DQL         D    +    + A    +     +
Sbjct: 121 ARLFKGQGKRVLLVAADPRRPAAGDQLASLGRDLGIDVHRFDQIDASRADVVRICQRGVE 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           + Q +  D++++DT GRLH +  LMA +  + + +       PH VL V DA TGQ+A+ 
Sbjct: 181 RGQEQGYDLIVLDTGGRLHVDDELMAELVAVKQAVN------PHEVLLVADAMTGQDAVN 234

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F    G TG+I+TK++G ARGG ++ I      P+ FLG+GE ++ LEPF     +
Sbjct: 235 MAGQFDQQVGLTGVILTKVEGDARGGAVLSIRAVTGKPIKFLGMGEKLDALEPFHPDRMA 294

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 295 SRILGMGD 302


>gi|118617614|ref|YP_905946.1| signal recognition particle protein Ffh [Mycobacterium ulcerans
           Agy99]
 gi|118569724|gb|ABL04475.1| signal recognition particle protein Ffh [Mycobacterium ulcerans
           Agy99]
          Length = 523

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 87/311 (27%), Positives = 144/311 (46%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D   +    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFVHRIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             VS      Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKTT+ GKL
Sbjct: 62  AVVSGALNPAQQVVKIVNEELVGILGGQTRELVF-AKTPPTVVMLAGLQGSGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++   G   +L A D  R AA++QL++   R         +G+   +   +    A A
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGQRAGVPVFAPHLGASPESGPGDPVAVAAA 180

Query: 192 -------KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                  K  DV+I+DTAGRL  +  LMA    + + +       P  VL VLDA  GQ+
Sbjct: 181 GLAEAQAKHFDVVIVDTAGRLGIDEELMAQASAIRKAIN------PDEVLFVLDAMIGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   + F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F   
Sbjct: 235 AVATAQAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPD 294

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 295 RMASRILGMGD 305


>gi|291530123|emb|CBK95708.1| signal recognition particle subunit FFH/SRP54 (srp54) [Eubacterium
           siraeum 70/3]
          Length = 455

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S KL +  + + +  +L++  V+E   E++  L+ +D+   V +  V ++  +  
Sbjct: 2   AFEGLSDKLGKVFSKLKNHGKLNEKDVKEAMREVKMALLEADVSFPVVKDFVAKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V + + K++   +   ++  S  P VI++ G+ G GKTT   K
Sbjct: 62  GSEVMNSLTPAQQVIDIVHDELIKLMGTDTARIDFP-SKPPCVIMMCGLQGAGKTTHTAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +     + +L A D +R AAIDQLK+      A        ++   +A E+ K A+
Sbjct: 121 LAKYLKKQNRRPLLVACDIYRPAAIDQLKVVGASVDAHVFEMG-QTNPVKIAKESIKYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRLH +  LM  +  +   ++      P+ +L V+D+ TGQ+A+   +
Sbjct: 180 DNGFDVVILDTAGRLHIDEDLMKELKDIKAEVQ------PNEILLVVDSMTGQDAVNVAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +   TG+I+TK+DG  RGG  + ++     P+ F GVGE  +DLE F     +  I
Sbjct: 234 SFNDMLDITGVILTKLDGDTRGGAALSVLSVTGKPIKFAGVGEKTDDLEQFHPNRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|308234553|ref|ZP_07665290.1| signal recognition particle protein [Atopobium vaginae DSM 15829]
 gi|328944151|ref|ZP_08241616.1| signal recognition particle protein [Atopobium vaginae DSM 15829]
 gi|327492120|gb|EGF23894.1| signal recognition particle protein [Atopobium vaginae DSM 15829]
          Length = 493

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 140/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F++ S +L+E    +    +L +        E+   L+ +D+   V +  V     K   
Sbjct: 2   FSNLSDRLQETFAHLRGKGKLSERDINDAMREIRMALLEADVNYRVVKDFVATCKEKCLT 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            D+     + Q V+  V E +  +L        +     PH+I++ G+ G GKTT   KL
Sbjct: 62  ADILQSLSAAQNVVAVVLEELTALLGTTESKLTFSPHRTPHIIMLCGLQGSGKTTAAAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +LAA DT R AA DQL+   +         + G++A  +A EA + A  
Sbjct: 122 AYLLKSQGHAPLLAACDTHRPAAADQLQTLGEEIGVRVYRGD-GANAIRVAQEAVQDAID 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  +  +M     +   +K      P  +L V+DA  GQ+ +  V+ 
Sbjct: 181 NLKDVVIVDTAGRLQIDEEMMQEAIDIKHAVK------PEQILMVVDAMAGQDIVNVVQE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G+IM+K+DG ARGGG + +      P+ F+ +GE  + LE F     +  I 
Sbjct: 235 FSKRLDFDGVIMSKLDGDARGGGALSVREVTGKPIKFVSMGEKPSSLEVFHPDRMAKRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|302558146|ref|ZP_07310488.1| signal recognition particle protein [Streptomyces griseoflavus
           Tu4000]
 gi|302475764|gb|EFL38857.1| signal recognition particle protein [Streptomyces griseoflavus
           Tu4000]
          Length = 545

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  ++ +  +   
Sbjct: 31  FDTLSDRLSATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRTFIKNVKERALG 90

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V++ +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 91  AEVSKALNPAQQVIKVVNDELITILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 149

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + + + G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 150 GRWLKEQGHSPVLVAADLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEF 209

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  D++I+DTAGRL  +  +M     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 210 ARTKVHDIVIVDTAGRLGIDQEMMQQAADI------RDAVSPDEILFVVDAMIGQDAVNT 263

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I      P+ F   GE ++D + F     ++
Sbjct: 264 AEAFRDGVGFDGVVLSKLDGDARGGAALSIRQITGKPIMFASNGEKLDDFDAFHPDRMAS 323

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 324 RILDMGDL 331


>gi|78188776|ref|YP_379114.1| Signal recognition particle protein [Chlorobium chlorochromatii
           CaD3]
 gi|78170975|gb|ABB28071.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium
           chlorochromatii CaD3]
          Length = 451

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     +     +++        +++  L+ +D+   VA+K++E++  K   
Sbjct: 4   FESLSDKLEATFKKLAGQATINEINIGVAMRDIKRALLAADVNYKVAKKLIEDIREKSLG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++    KP N      P +I+V G+ G GKTT   KL
Sbjct: 64  EEVIKSVSPAQMIVKIVYDELTELMGGEQKPLNLSPKKLPAIIMVAGLQGSGKTTFCAKL 123

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++   G   ML A D +R AA+DQLK   ++        +      A A +  + A+A
Sbjct: 124 ALRLRKNGKNPMLIAADVYRPAAVDQLKALGEQVEVPVFSVDEKDAMKA-ALQGLEAAKA 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  +  +MA    +   LK      P  +L V+D+  GQ A+   + 
Sbjct: 183 AAKDVVIVDTAGRLQIDQAMMAEAEALKNALK------PDELLFVVDSMMGQEAVNTAKA 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG ARGG  + I    + P+ F+ +GE ++DL+ F     +  I 
Sbjct: 237 FNDRLDFDGVVLTKLDGDARGGAALSIRQVVEKPIKFISIGEKVDDLDIFYPDRMAQRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|294631640|ref|ZP_06710200.1| signal recognition particle protein [Streptomyces sp. e14]
 gi|292834973|gb|EFF93322.1| signal recognition particle protein [Streptomyces sp. e14]
          Length = 516

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 150/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FDTLSDRLSATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRTFIKNVKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DVS      Q+VL  V+E + ++L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  ADVSKALNPAQQVLKIVNEELVEILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            K + + G   +L A D  R  A++QL + ADR        E G+   D   +A ++ + 
Sbjct: 121 GKWLKEQGHSPLLVACDLQRPNAVNQLSVVADRAGVAVYAPEPGNGVGDPVKVAKDSIEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  D++I+DTAGRL  +  +M     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 AKAKVHDIVIVDTAGRLGIDQEMMRQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I      P+ F   GE ++D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIRQITGKPIMFASNGEKLDDFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|227515696|ref|ZP_03945745.1| signal recognition particle receptor [Lactobacillus fermentum ATCC
           14931]
 gi|227085944|gb|EEI21256.1| signal recognition particle receptor [Lactobacillus fermentum ATCC
           14931]
          Length = 526

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 115/298 (38%), Positives = 173/298 (58%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +K  +G   +       +   +++ R +D+   ++LED+LI SD+G  +A K+ + L  +
Sbjct: 218 KKYDQGLEKSRNGFGARLNRFLANFRHVDEDFFDDLEDMLIESDVGYEMAMKLSDSLREE 277

Query: 74  RYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              ++   ++ + +V       ++       +         P VI+ VGVNG GKTT IG
Sbjct: 278 VRLQNAKNKQDVSNVIIEKMVDLYDEAGAGEQTTLTMADQGPTVIMFVGVNGAGKTTTIG 337

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++ +    G +V+LAA DTFR+ A +QL++WA R   D V     SD AA+ ++A  +A
Sbjct: 338 KMAARFKGQGKRVLLAAADTFRAGATEQLEVWAQRDGVDIVTGPENSDPAAVVFDAVTKA 397

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVL +DTAGRL N   LM  + KM R+L R  P APH VL VLDATTGQNAL Q 
Sbjct: 398 KKDNYDVLFVDTAGRLQNKVNLMNELAKMKRILTREIPDAPHEVLLVLDATTGQNALTQA 457

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           ++F      TG+++TK+DGTARGG ++ I     +PV F+G+GE ++DLE F A+DF 
Sbjct: 458 KLFKETTDVTGIVLTKLDGTARGGIVLAIRNELHLPVKFVGLGEKVSDLEEFNAQDFV 515


>gi|166368109|ref|YP_001660382.1| signal recognition particle protein [Microcystis aeruginosa
           NIES-843]
 gi|166090482|dbj|BAG05190.1| signal recognition particle protein [Microcystis aeruginosa
           NIES-843]
          Length = 478

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++    +    ++         +E+   L+ +D+ + V +  + E+  +   
Sbjct: 2   FDALADRLEDAWKKLRGQDKISSANIQDTLKEVRRALLEADVNLQVVKGFIAEVEKQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + K++   + P        P VIL+ G+ G GKTT   KL
Sbjct: 62  AEVISGVNPGQQFIKIVYDELVKIMGESNVPL-AQADKPPTVILMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       ++ A D +R AAIDQL     + +         ++   +A +  ++A+ 
Sbjct: 121 ALYLRKQSKSCLMVATDVYRPAAIDQLITLGKQINVPVFEMGSQANPVDIARQGVEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VD +IIDTAGRL  ++ +M  + ++ +++K      P   L V+DA TGQ A      
Sbjct: 181 LGVDTVIIDTAGRLQIDTQMMGELAQIKKIVK------PDDTLLVVDAMTGQEAASLTNT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TK+DG  RGG  + +      P+ F+GVGE +  LEPF     ++ I 
Sbjct: 235 FHQQIGITGAILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALEPFYPDRLASRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 NMGD 298


>gi|21673993|ref|NP_662058.1| signal recognition particle protein [Chlorobium tepidum TLS]
 gi|21647139|gb|AAM72400.1| signal recognition particle protein [Chlorobium tepidum TLS]
          Length = 449

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+  +  +     +++        +++  L+ +D+   VA+K+VE++  K   
Sbjct: 2   FDNLSDKLELTLKKLAGQATINEVNIGIAMRDIKRALLSADVNYKVAKKLVEDIREKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V++ + +++   ++P N      P +++V G+ G GKTT   KL
Sbjct: 62  ESVIKSVSPAQMIVKIVNDELTEIMGGQNQPLNLPPKKIPAIVMVAGLQGSGKTTFCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K++   G   +L A D +R AA++QLK   ++        E   DA   A    + A+A
Sbjct: 122 AKRLKKNGKNPILVAADVYRPAAVEQLKTLGEQIDVPVFSIEE-QDAMKAALGGLEAAKA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  +  +MA    +   L       P  +L V+D+  GQ A+   + 
Sbjct: 181 GAKDVVIVDTAGRLQIDEAMMAEAEALKNRLS------PDELLFVVDSMMGQEAVNTAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG ARGG  + I    + P+ F+ VGE ++DL+ F     +  I 
Sbjct: 235 FNDRLDFDGVVLTKLDGDARGGAALSIRQVVEKPIKFMSVGEKVDDLDVFYPDRMAQRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|294793324|ref|ZP_06758469.1| signal recognition particle protein [Veillonella sp. 6_1_27]
 gi|294455755|gb|EFG24120.1| signal recognition particle protein [Veillonella sp. 6_1_27]
          Length = 450

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+E    +    ++ +        ++   L+ +D+   VA+  V+ +  K  
Sbjct: 2   AFDSLSEKLQEAFQSLKGKGKITEDDVNLALRQVRTALLEADVNFMVAKDFVKSIKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V++ +  +L           S  P +I++VG+ G GKTT  GK
Sbjct: 62  GEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMIS-SKPPTIIMLVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQA 189
           L+  +   G + ML A D +R AAI QL++   +        E    +   +   A +Q+
Sbjct: 121 LAVYLRKQGKRPMLVAADVYRPAAITQLQVVGKQIDIPVFADETPGANPVDIVRRAVEQS 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV+IIDTAGRL  + +LM  +  +   +       PH +L V+D+  GQ+A+   
Sbjct: 181 THMLKDVVIIDTAGRLAIDEVLMDELSNIKAAV------RPHEILLVVDSMIGQDAVTTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G  G+I+TK+DG ARGG  + I     +P+ F GV E ++  + F     ++ 
Sbjct: 235 QTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFYPDRMASR 294

Query: 310 ITGCLDY 316
           I    D+
Sbjct: 295 ILDLGDF 301


>gi|229140489|ref|ZP_04269044.1| Signal recognition particle protein [Bacillus cereus BDRD-ST26]
 gi|228643050|gb|EEK99326.1| Signal recognition particle protein [Bacillus cereus BDRD-ST26]
          Length = 305

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 144/302 (47%), Gaps = 17/302 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +  
Sbjct: 2   AFEGLADRLQQTMQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTELMGGEQSKIAV-ANKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A  +A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ LE F  +  ++ 
Sbjct: 235 QSFHEQLGLTGVVLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDALEAFHPERMASR 294

Query: 310 IT 311
           I 
Sbjct: 295 IF 296


>gi|164688563|ref|ZP_02212591.1| hypothetical protein CLOBAR_02208 [Clostridium bartlettii DSM
           16795]
 gi|164602976|gb|EDQ96441.1| hypothetical protein CLOBAR_02208 [Clostridium bartlettii DSM
           16795]
          Length = 450

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+   + + S  +L +        E++  L+ +D+   V +  V+++  +   
Sbjct: 3   FEGLSDKLQGAFSKLKSKGKLTEKDVKAAMREVKLALLEADVNFKVVKDFVKKVQERCVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V+E +  ++  +        S  P +I++VG+ G GKTT  GKL
Sbjct: 63  QEVMESLTPAQHVIKIVNEELTALMGDVQSKITIS-SKPPTIIMMVGLQGAGKTTTSGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
                  G K +L A D +R AAI QL++       +        +   +A      A  
Sbjct: 122 GGYFKKQGKKPLLVACDVYRPAAIKQLEVVGKSLDIEVFNMGDKENPVNIAKAGLSHAIK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++IIDTAGRLH +  LM  +  +   +       PH +L V+D+ TGQ+A+   E 
Sbjct: 182 NNNDLVIIDTAGRLHIDEELMDELKSIKSEV------RPHEILLVVDSMTGQDAVNVAES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+++TK+DG  RGG  + I    + P+ F+G+GE ++DLEPF     ++ I 
Sbjct: 236 FDNALGIDGVVLTKLDGDTRGGAALSIRAVTQKPIKFIGMGEKLDDLEPFHPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|88855269|ref|ZP_01129934.1| signal recognition particle, subunit SRP54 [marine actinobacterium
           PHSC20C1]
 gi|88815797|gb|EAR25654.1| signal recognition particle, subunit SRP54 [marine actinobacterium
           PHSC20C1]
          Length = 524

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 152/307 (49%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L +   ++    +L     DG   E+   L+ +D+ + V ++    +  +   
Sbjct: 6   FGNLTDRLADTFKNLRGKGKLSEADVDGTVREIRRALLDADVALEVVKEFTGRVRERALG 65

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V++ +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 66  HEVSQALNPAQQVVQIVNDELVTILGGEARRIEF-AKNPPTVIMLAGLQGAGKTTLAGKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---GSDAAALAYEAFKQ 188
           SK ++  G   +L A D  R  A+ QL++ A++        E      D   +A +A K 
Sbjct: 125 SKWLAADGHTPLLVAADLQRPNAVTQLQVVAEQAGVAVFAPEPGNGKGDPVKVAKQALKF 184

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+ DV+IIDTAGRL  ++ LM     + + +       P  VL V+DA  GQ+A++ 
Sbjct: 185 AKDKQHDVVIIDTAGRLGVDAELMKQAANIRKAVD------PDEVLFVIDAMIGQDAVKT 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F      TG++++K+DG ARGG  + +      P+ F   GEG++D EPF     ++
Sbjct: 239 ARAFQEGVDFTGVVLSKLDGDARGGAALSVASITGRPIMFASTGEGLDDFEPFHPDRMAS 298

Query: 309 VITGCLD 315
            I    D
Sbjct: 299 RILDLGD 305


>gi|326487934|dbj|BAJ89806.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326495310|dbj|BAJ85751.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 554

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 150/307 (48%), Gaps = 15/307 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             +LT G  S   KL+    D+++   + + +R+ +   L+ +D+ + V ++ V  +  K
Sbjct: 72  FGQLTTGLESAWNKLRGV--DVLTKETIVEPMRD-IRRALLEADVSLPVVRRFVSSVSEK 128

Query: 74  RYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
               DV       Q+++  V + + +++        +     P VIL+ G+ GVGKTTV 
Sbjct: 129 ALGSDVIRGIRPEQQLVKIVHDELVQLMGGEVSDLVF-AKTGPTVILLAGLQGVGKTTVC 187

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+  +   G   ML A D +R AAIDQL +  ++           +  A +   A ++
Sbjct: 188 AKLAFYLKKLGKSCMLVAADVYRPAAIDQLTVLGEQVGVPVYSEGTTAKPAEITKNAMEE 247

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+   +D +++DTAGRL  +  +M  + ++ + +       P  +L V+DA TGQ A   
Sbjct: 248 AKRNNIDAIVVDTAGRLQIDKTMMVELKEVKKSVN------PTEILLVVDAMTGQEAAAL 301

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V  F+   G +G I+TK+DG +RGG  + +      P+ F+G GE + DLE F     + 
Sbjct: 302 VTTFNIEIGISGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERMEDLELFYPDRMAQ 361

Query: 309 VITGCLD 315
            + G  D
Sbjct: 362 RVLGMGD 368


>gi|257462434|ref|ZP_05626847.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp.
           D12]
 gi|317060096|ref|ZP_07924581.1| signal recognition particle protein [Fusobacterium sp. D12]
 gi|313685772|gb|EFS22607.1| signal recognition particle protein [Fusobacterium sp. D12]
          Length = 449

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + +E    +    +L +       +E++  L+ +D+   V +  +E +  K   
Sbjct: 2   LDNLGSRFQEIFKKVRGHGKLSESNIKDALKEVKMSLLEADVNYKVVKDFIESIREKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V++ + ++L   +       S  P V+++ G+ G GKTT  GKL
Sbjct: 62  TEVLKGINPGQQFIKLVNDELIELLGGTNARLT-KASKNPTVLMLSGLQGAGKTTFAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     +V+L A D +R AAI QL++  ++        E   D   +   A ++A+ 
Sbjct: 121 AKFLKKQNERVLLVAADVYRPAAIKQLQVLGEQVEVSVYAEEGHQDVLGICERALEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +    +IIDTAGRLH +  LM  +  + R+        P  +L V+D+  GQ+A+   + 
Sbjct: 181 EHDTYMIIDTAGRLHIDETLMEELKNIKRL------TRPQEILLVVDSMIGQDAVNLAKS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG  RGG  + I      P+ F+GVGE ++D+E F      + I 
Sbjct: 235 FNENLSIDGVVLTKLDGDTRGGAALSIKSVVGKPIKFIGVGEKLDDIELFHPDRLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|222099069|ref|YP_002533637.1| Signal recognition particle-docking protein FtsY [Thermotoga
           neapolitana DSM 4359]
 gi|221571459|gb|ACM22271.1| Signal recognition particle-docking protein FtsY [Thermotoga
           neapolitana DSM 4359]
          Length = 294

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 128/301 (42%), Positives = 179/301 (59%), Gaps = 9/301 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +     L KG   T       +  ++  ++LDD  RE+LE+LLI++D+G+   + I+E L
Sbjct: 1   MGLFDFLKKGLQKTKDAFFGKVVSLLKGKKLDDETREKLEELLIQADVGIETTEYILERL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K           L  + E + ++L       N +  + P VI VVGVNG GKTT  GK
Sbjct: 61  EEK-------DGNALEALRETLLEIL-NFDTALN-EPDNPPFVITVVGVNGTGKTTSCGK 111

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K  +D G  V+LAA DTFR+AAI+QLK+W DR  A  +    G+D AA+A++A   A 
Sbjct: 112 LAKMFADRGKSVVLAAADTFRAAAIEQLKLWGDRVGATVIAHSEGADPAAVAFDAVSHAL 171

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DV+IIDTAGRLH    LM  + K+ RV+K+  P APH VL V+DATTGQN L Q +
Sbjct: 172 ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVIKKKIPEAPHEVLLVIDATTGQNGLVQAK 231

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F      TG+I+TK+DGTA+GG ++ I     IP+ F+GVGE  +DL+PF    F  V+
Sbjct: 232 VFKDAVDVTGIILTKLDGTAKGGIVLAIAKELGIPIKFVGVGEKEDDLKPFDPNAFVEVL 291

Query: 311 T 311
            
Sbjct: 292 L 292


>gi|323705467|ref|ZP_08117042.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535369|gb|EGB25145.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 321

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 123/306 (40%), Positives = 187/306 (61%), Gaps = 5/306 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +     ++L  G A T       I  I+S  R++DD + EELE++LI +D+GV+  +KI
Sbjct: 18  EDKKGLYQRLRDGLARTRDNFTSKIDGILSFGRKVDDELFEELEEILILADVGVSTTEKI 77

Query: 67  VEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++ L  K   + +     + ++ +E I+ ++      F      +P +IL+VGVNGVGKT
Sbjct: 78  IDNLKEKAKEQKLKDAEKIKELLAEEIYDIMEAKETSFKI---TQPTLILIVGVNGVGKT 134

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K    G +V+L A DTFR+AAIDQL++WA + + + +  E GSD A++ ++ 
Sbjct: 135 TTIGKLANKFKRDGKRVLLVAADTFRAAAIDQLEVWAGKNNCEIIRHEEGSDPASVLFDG 194

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K A+++ VDV++ DTAGRLHN   LM  + K+ RV +R           VLDATTGQNA
Sbjct: 195 IKAAKSRNVDVILCDTAGRLHNKKNLMEELKKIYRVAQREFNEGNIETFLVLDATTGQNA 254

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           ++Q ++F      TG+I+TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F ++ 
Sbjct: 255 IQQAKIFKEATDVTGIILTKLDGTAKGGIVISIKSELDIPVRFIGVGEGIDDLQEFDSEK 314

Query: 306 FSAVIT 311
           F   + 
Sbjct: 315 FVRALF 320


>gi|187931703|ref|YP_001891687.1| signal recognition particle GTPase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712612|gb|ACD30909.1| signal recognition particle GTPase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 458

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+     I     L +        ++   L+ +D+ + V +K +  +  K   
Sbjct: 2   FTSLSEKLQSSFKKIKGQTSLTEENIQSALRDIRVSLLEADVALPVVKKFIANIKEKAIG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + I K L   + P N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  EEVKKSLTPDQTFISFVKKEIEKALGEEAVPINLK-TQPPAVILMAGLQGAGKTTSTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVM+ + D +R AAIDQL+  A+  + +F  S+       +   A K A+
Sbjct: 121 AKYLKEQHKKKVMVVSADVYRPAAIDQLRTLANSLNVEFFESDASQQPEDIVTAAIKTAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K +DVLIIDTAGRLH ++ +M  I ++ ++ K      P      +D+ TGQ+A    +
Sbjct: 181 TKLIDVLIIDTAGRLHIDNDMMDEIKQIHKIAK------PIETFFTVDSMTGQDAAVTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + I      P+ FLGVGE  + L+PF     ++ I
Sbjct: 235 AFNDALELTGVILTKTDGDARGGAALSIREITGKPIKFLGVGEKTDALKPFHPDRVASKI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|193214940|ref|YP_001996139.1| signal recognition particle-docking protein FtsY [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088417|gb|ACF13692.1| signal recognition particle-docking protein FtsY [Chloroherpeton
           thalassium ATCC 35110]
          Length = 313

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 125/312 (40%), Positives = 186/312 (59%), Gaps = 11/312 (3%)

Query: 11  LSWIR-----KLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQ 64
           + +       +L +G A T   +K  IT ++  R  +DD   EELE +LI +D+GV    
Sbjct: 1   MGFFDKFKISRLKEGLAKTRENIKTKITKLVKGRTEIDDEFLEELEQILISADVGVQTTL 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKP----FNWDFSHRPHVILVVGV 119
            IV+++  +   +  + +  L + + + I KML          F+      P+VIL+VGV
Sbjct: 61  DIVDKITERAKNERYASEEDLNNMLIDEIQKMLSDARDAHVVDFDAPLPSTPYVILIVGV 120

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGK++     AG KV++AA DTFR+AA +QL+IWA+R     V    G+D A
Sbjct: 121 NGVGKTTSIGKMAYNYKTAGKKVLIAAADTFRAAATEQLEIWAERAGVPIVGQRQGADPA 180

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ +++   A ++ +DV+++DTAGRLHN   LM  + K++RV ++  P APH VL VLDA
Sbjct: 181 SVVFDSVSSAVSRDMDVVLVDTAGRLHNKIHLMEELSKIMRVAQKKVPDAPHEVLLVLDA 240

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q + F      TGLI+TK+DGTA+GG +I I     IPV ++GVGE I DL+
Sbjct: 241 STGQNAINQAKEFMKSVKVTGLILTKLDGTAKGGVVIGISRELNIPVKYIGVGEKIEDLQ 300

Query: 300 PFVAKDFSAVIT 311
            F  + F   + 
Sbjct: 301 IFDRQKFIEALL 312


>gi|167751041|ref|ZP_02423168.1| hypothetical protein EUBSIR_02026 [Eubacterium siraeum DSM 15702]
 gi|167655959|gb|EDS00089.1| hypothetical protein EUBSIR_02026 [Eubacterium siraeum DSM 15702]
          Length = 455

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 156/305 (51%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S KL +  + + +  +L++  V+E   E++  L+ +D+   V +  V ++  +  
Sbjct: 2   AFEGLSDKLGKVFSKLKNHGKLNEKDVKEAMREVKMALLEADVSFPVVKDFVAKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V + + +++   +   ++  S  P VI++ G+ G GKTT   K
Sbjct: 62  GSEVMNSLTPAQQVIDIVHDELIQLMGTDTARIDFP-SKPPCVIMMCGLQGAGKTTHTAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +     + +L A D +R AAIDQLK+      A        ++   +A E+ K A+
Sbjct: 121 LAKYLKKQNRRPLLVACDIYRPAAIDQLKVVGASVDAHVFEMG-QTNPVKIAKESIKYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRLH +  LM  +  +   ++      P+ +L V+D+ TGQ+A+   +
Sbjct: 180 DNGFDVVILDTAGRLHIDEDLMKELKDIKAEVQ------PNEILLVVDSMTGQDAVNVAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +   TG+I+TK+DG  RGG  + ++     P+ F GVGE  +DLE F     +  I
Sbjct: 234 SFNDMLDITGVILTKLDGDTRGGAALSVLSVTGKPIKFAGVGEKTDDLEQFHPNRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|319441356|ref|ZP_07990512.1| signal recognition particle protein [Corynebacterium variabile DSM
           44702]
          Length = 532

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 90/318 (28%), Positives = 142/318 (44%), Gaps = 30/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FESLSDRLAGALKGLRDKGRLTEADINATAREIRLALLEADVSLTVVRGFIKRVKERANG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             VS      Q+V+  V E + ++L   ++  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  VVVSEALNPAQQVIKIVDEELKEILGGETRRLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           +K +   G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 AKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERADVTTFAPDPGTSLDSLDHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+A    ++A+  K DV+IIDTAGRL  +  LM     +       D   P  VL V+
Sbjct: 181 PVAVAQAGIEEARRTKHDVVIIDTAGRLGIDEELMTQARNI------RDAVNPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+   E F      TG+++TK+DG ARGG  + I      P+ +   GE + D
Sbjct: 235 DAMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPILYASTGEKLED 294

Query: 298 LEPFVAKDFSAVITGCLD 315
            + F     +  I G  D
Sbjct: 295 FDIFHPDRMANRILGMGD 312


>gi|159027605|emb|CAO86977.1| ffh [Microcystis aeruginosa PCC 7806]
          Length = 478

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++    +    ++         +E+   L+ +D+ + V +  + E+  +   
Sbjct: 2   FDALADRLEDAWKKLRGQDKISSANIQETLKEVRRALLEADVNLQVVKGFIAEVEKQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + K++   + P        P VIL+ G+ G GKTT   KL
Sbjct: 62  AEVISGVNPGQQFIKIVYDELVKIMGESNVPL-AQADKPPTVILMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       ++ A D +R AAIDQL     + +         ++   +A +  ++A+ 
Sbjct: 121 ALYLRKQSKSCLMVATDVYRPAAIDQLITLGQQINVPVFEMGSQANPVDIARQGVEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VD +IIDTAGRL  ++ +M  + ++ +++       P   L V+DA TGQ A      
Sbjct: 181 LGVDTVIIDTAGRLQIDTQMMGELAQIKKIVN------PDDTLLVVDAMTGQEAASLTNT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TK+DG  RGG  + +      P+ F+GVGE +  LEPF     ++ I 
Sbjct: 235 FHQQIGITGAILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALEPFYPDRLASRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 NMGD 298


>gi|57641421|ref|YP_183899.1| signal recognition particle protein Srp54 [Thermococcus
           kodakarensis KOD1]
 gi|73919452|sp|Q5JJC8|SRP54_PYRKO RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|57159745|dbj|BAD85675.1| signal recognition particle, SRP54 subunit [Thermococcus
           kodakarensis KOD1]
          Length = 448

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRY 75
                   L   +  +  S  +D+   +E+    +  L+++D+ V +  ++ +++  +  
Sbjct: 2   ALEKLGQALNSALKKLARSSTVDEATIKEIVRDIQRALLQADVNVKLVLQLTKQIQKRAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++        + ++  V E + K L   +KP   +  H+P VIL VG+ G GKTT + K
Sbjct: 62  EEEPPAGVSKKEHIIKIVYEELTKFLGTEAKPL--EIKHKPTVILTVGIQGSGKTTSVAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ +   G KV +   DT+R  A  QL+   D    +        DA  LA E  +  +
Sbjct: 120 LARYLQKRGYKVGVVCSDTWRPGAYYQLRQLLDPFGIEVFGDPEEKDAVKLAREGVEHFR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K VDV+I+D+AGR      L+  + ++   +K      PH V+ V+D T GQ A  Q  
Sbjct: 180 EKGVDVIIVDSAGRHKEEKGLIEEMRQISEAIK------PHEVILVIDGTIGQQAYNQAM 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TK+DG+A+GGG +  V     P+ F+G GE I+DLEPF  K F + +
Sbjct: 234 AFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGERIDDLEPFDPKRFVSRL 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGLGD 298


>gi|260591562|ref|ZP_05857020.1| signal recognition particle protein [Prevotella veroralis F0319]
 gi|260536593|gb|EEX19210.1| signal recognition particle protein [Prevotella veroralis F0319]
          Length = 451

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKSFTDTVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++   +   N   ++RP +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIVHDELAELMGGEAVGLNL--TNRPAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AAIDQLK+  ++            +   +A  A  +A+
Sbjct: 120 ANMLKTKEHKNPLLVACDVYRPAAIDQLKVVGEQVGVPVYSELENKNVNEIADHALAEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+IIDTAGRL  +  +M  I  +   +       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGCDVVIIDTAGRLAVDEEMMNEIESLKNHVN------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFNGVVLTKLDGDTRGGAALSIRTVVTKPIKFIGTGEKMEAIDVFHPGRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|228998623|ref|ZP_04158210.1| Cell division protein ftsY [Bacillus mycoides Rock3-17]
 gi|229006123|ref|ZP_04163811.1| Cell division protein ftsY [Bacillus mycoides Rock1-4]
 gi|228755199|gb|EEM04556.1| Cell division protein ftsY [Bacillus mycoides Rock1-4]
 gi|228761091|gb|EEM10050.1| Cell division protein ftsY [Bacillus mycoides Rock3-17]
          Length = 332

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 124/322 (38%), Positives = 191/322 (59%), Gaps = 6/322 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GVA
Sbjct: 11  KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILISADVGVA 70

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   R +  V       I+K     S   N        VIL V
Sbjct: 71  TVMELIDQLKEEVQRRNIQDPREVQAVISEKLVGIYKGEEDFSNELNIQQDQ-LTVILFV 129

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 130 GVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 189

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVD+L+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 190 PAAVMYDAVQAAKARKVDILLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVI 249

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 250 DATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDD 309

Query: 298 LEPFVAKDFSAVITGCLDYGEE 319
           L+ F  + +   +   L   EE
Sbjct: 310 LQQFDPEQYVYGLFANLVEKEE 331


>gi|219849542|ref|YP_002463975.1| signal recognition particle protein [Chloroflexus aggregans DSM
           9485]
 gi|219543801|gb|ACL25539.1| signal recognition particle protein [Chloroflexus aggregans DSM
           9485]
          Length = 450

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 150/306 (49%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREEL---EDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+     + S   L +D VRE +      L+ +D+   V +  V ++  K   
Sbjct: 2   FESLSDRLQAVFQKLGSKGVLTEDDVREAMKQVRLALLEADVNFRVVKDFVAKVTEKAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q+V+  V + +  +L     P   +    P VI++VG+ G GKTT+  KL
Sbjct: 62  EEVTKSLTPHQQVIKIVHQELINLLGTEHVPLQ-EARPGPTVIMLVGLQGTGKTTLAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G +V+L A D +R AAI QL+    + +         +    +A  A + A+ 
Sbjct: 121 ALHLRKKGKRVLLVAADVYRPAAITQLQALGRQLNIPVYSEGTQASPPDIAEHALEHARK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +V+IIDTAGRL  +  LM  + ++   +       P   L V+DA TGQ A+R  E 
Sbjct: 181 ELFNVVIIDTAGRLQIDEPLMQELEQIEARVH------PTERLLVVDAMTGQEAVRVAET 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND--LEPFVAKDFSAV 309
           F+     TG++MTKMDG ARGG  + +     +P+ FL  GE ++   LE F     ++ 
Sbjct: 235 FNQRVKLTGVVMTKMDGDARGGAALSVRAVTGVPIKFLSTGEKVDGNTLEIFHPDRLASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|71892395|ref|YP_278129.1| cell division protein [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|71796501|gb|AAZ41252.1| cell division protein [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 308

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 181/302 (59%), Gaps = 3/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +   +L +   +T  KL + I ++I ++R+D  + +++++ L+ +DI +   QKI+  L 
Sbjct: 6   NLFNRLKQSLLNTRKKLGDNIIELIRNKRIDTVILDKIKNQLLIADINIHTTQKIINNLR 65

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                     ++  +D +   + K++  + +P       +P +IL+VGVNGVGKTT IGK
Sbjct: 66  NYISFNTNCNEQSFHDALRNEMLKIVTLIDRPLFLQ-EKKPFIILMVGVNGVGKTTTIGK 124

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-ADFVCSEIGSDAAALAYEAFKQA 189
           L+         VMLAAGDT R+AA DQL+I   R+     +     SD+A++ ++A K A
Sbjct: 125 LAHYYRLKNKTVMLAAGDTCRAAAADQLEILGKRSGCIAVITKNTTSDSASIVFDAVKIA 184

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K VD+LIIDTAGRL N    M  + K+IRV+ ++D  APH  + VLDA  GQN++ QV
Sbjct: 185 KIKSVDLLIIDTAGRLQNKIYAMEELKKIIRVITKIDATAPHETMLVLDANIGQNSVNQV 244

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            MF+     TG++MTK+DG+A+GG L+ I     IP+ ++G+G+ I+DL+PF + +F   
Sbjct: 245 RMFNEAIKITGIVMTKLDGSAKGGTLLSIADHFSIPIRYIGIGQNIDDLQPFKSHNFVEA 304

Query: 310 IT 311
           I 
Sbjct: 305 IL 306


>gi|323135868|ref|ZP_08070951.1| signal recognition particle protein [Methylocystis sp. ATCC 49242]
 gi|322398959|gb|EFY01478.1| signal recognition particle protein [Methylocystis sp. ATCC 49242]
          Length = 512

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL      +     L +        E+   L+ +D+ + V +   +++  +   
Sbjct: 2   FESLSDKLSSVFDRLTRRGSLTEADVNEALREIRRALLEADVALDVVRSFADKVRDRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++++ + L   ++P +   +  P  I++VG+ G GKTT   K+
Sbjct: 62  AGVIKSVSPGQMVVKIVNDVLIETLGETAEPIDL-AAKPPIAIMMVGLQGAGKTTTTAKI 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G + ++A+ D  R AA +QL +   +   D +    G     +A  A + A+
Sbjct: 121 AKRLKERHGKRSLMASLDVKRPAAQEQLAVLGRQVEVDTLPIVPGQTPLQIARRAMEAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+++DTAGR H +  LM  +  +           PH +L V DA TGQ+A+   +
Sbjct: 181 LEGYDVVLLDTAGRTHIDEPLMQEMADIKSYAN------PHEILLVADALTGQDAVNLAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+  +GVGE ++ L+ F     +  I
Sbjct: 235 NFDERVGLTGIVLTRMDGDGRGGAALSMRYVTGKPIKLIGVGEKMDALDEFAPTRIANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|229071345|ref|ZP_04204568.1| Cell division protein ftsY [Bacillus cereus F65185]
 gi|228711799|gb|EEL63751.1| Cell division protein ftsY [Bacillus cereus F65185]
          Length = 329

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 121/310 (39%), Positives = 187/310 (60%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GVA
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVA 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   + +  V       I+K     S   N        V+L V
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSDFSNEINMQGDQ-LTVVLFV 126

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 127 GVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 187 PAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVI 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 247 DATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDD 306

Query: 298 LEPFVAKDFS 307
           L+ F  + + 
Sbjct: 307 LQQFDPEQYV 316


>gi|217961267|ref|YP_002339835.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           AH187]
 gi|222097292|ref|YP_002531349.1| signal recognition particle-docking protein ftsy [Bacillus cereus
           Q1]
 gi|217065005|gb|ACJ79255.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           AH187]
 gi|221241350|gb|ACM14060.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           Q1]
 gi|324327744|gb|ADY23004.1| signal recognition particle-docking protein FtsY [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 329

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 186/309 (60%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D+    R++D+   EELE++LI +D+GV+
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVS 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVG 118
              +++++L  +   +++   + +  V       +      F  + + +     V+L VG
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPKEVQAVISEKLIEIYKGDSDFTNEINEQKDGLTVVLFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD 
Sbjct: 128 VNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+D
Sbjct: 188 AAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVID 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL
Sbjct: 248 ATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307

Query: 299 EPFVAKDFS 307
           + F  + + 
Sbjct: 308 QQFDPEQYV 316


>gi|332880672|ref|ZP_08448345.1| signal recognition particle protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681306|gb|EGJ54230.1| signal recognition particle protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 450

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKTFTDTVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N      P VIL+ G+NG GKTT+ GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELATLMGGETAELNLQ--GHPSVILMAGLNGAGKTTLSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L AA D +R AAI+QLK+  ++            DA  +A  A K+A+
Sbjct: 120 ALMLKTKKRKNPLLAACDIYRPAAIEQLKVLGEQIGIPVYSEPDNKDAVQIAQNAVKEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A+   +
Sbjct: 180 AKGYDVVIVDTAGRLAVDEQMMQEIAAIKHGIN------PDETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVNKPIKFVGTGEKMEAIDQFHPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|229821026|ref|YP_002882552.1| signal recognition particle protein [Beutenbergia cavernae DSM
           12333]
 gi|229566939|gb|ACQ80790.1| signal recognition particle protein [Beutenbergia cavernae DSM
           12333]
          Length = 528

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 141/307 (45%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L    + +    RL +   E    E+   L+ +D+ + V +     +  +  +
Sbjct: 2   FATLSDRLSAAFSSLRGKGRLSEADIEATVTEIRRALLDADVALPVVRSFTATVRERASS 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E + ++L   ++   +     P VIL+ G+ G GKTT+ GKL
Sbjct: 62  AEVSRALNPSQQIVKIVNEELTQILGGSARELRF-AKRPPTVILLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---GSDAAALAYEAFKQ 188
              +   G   +L A D  R  A+ QL+I  +         E      D  A+A      
Sbjct: 121 GHWLRSEGHTPLLVAADLQRPNAVQQLQIVGENAGVPVWAPEPGNGTGDPVAVARTGVAH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ +  DV+++DTAGRL  ++ +M     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 AKDRYYDVVVVDTAGRLGVDAEMMRQAADI------RDAVSPDEILFVVDAMIGQDAVTT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G TG++++K+DG ARGG  + +      PV F   GE + D E F     ++
Sbjct: 235 ANAFAEGVGFTGVVLSKLDGDARGGAALSVAQVTGAPVLFASTGEKVTDFERFHPDRMAS 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|78212426|ref|YP_381205.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Synechococcus sp. CC9605]
 gi|78196885|gb|ABB34650.1| signal recognition particle protein [Synechococcus sp. CC9605]
          Length = 492

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +     +     DG  +++   L+ +D+ + V ++ V ++  K   
Sbjct: 2   FDELSARFEDAVKGLRGQDSISETNVDGALKDVRRALLEADVSLPVVKEFVADVRDKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V E + +++   + P     +  P V+L+ G+ G GKTT   KL
Sbjct: 62  AEVVRGVSPDQKFIQVVHEQLVEVMGGDNAPL-AKAADAPTVVLMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + D G + ++   D +R AAI+QLK    +   +       +    +A     +A+ 
Sbjct: 121 GLHLKDQGRRALMVGADVYRPAAIEQLKTLGAQIDVEVFSLGAEAKPEDIAAAGLAKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D L++DTAGRL  ++ +M  + ++   ++      P  VL V+D+  GQ A      
Sbjct: 181 EGFDTLLVDTAGRLQIDTEMMEEMVRIRTAVQ------PDEVLLVVDSMIGQEAAELTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHDQVGITGAVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|53714504|ref|YP_100496.1| putative signal recognition protein [Bacteroides fragilis YCH46]
 gi|60682525|ref|YP_212669.1| signal recognition particle protein [Bacteroides fragilis NCTC
           9343]
 gi|253565005|ref|ZP_04842461.1| signal recognition particle protein [Bacteroides sp. 3_2_5]
 gi|265766036|ref|ZP_06094077.1| signal recognition particle protein [Bacteroides sp. 2_1_16]
 gi|52217369|dbj|BAD49962.1| putative signal recognition protein [Bacteroides fragilis YCH46]
 gi|60493959|emb|CAH08751.1| signal recognition particle protein [Bacteroides fragilis NCTC
           9343]
 gi|251946470|gb|EES86847.1| signal recognition particle protein [Bacteroides sp. 3_2_5]
 gi|263253704|gb|EEZ25169.1| signal recognition particle protein [Bacteroides sp. 2_1_16]
 gi|301164001|emb|CBW23557.1| signal recognition particle protein [Bacteroides fragilis 638R]
          Length = 439

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 151/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKGFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +     D   +P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGET--VEIDTKGQPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      + +L A D +R AAI+QL++ A++            D  ++A  A K+A+
Sbjct: 120 ARMLKTKKNKRPLLVACDVYRPAAIEQLRVLAEQIDVPMYSEIDSKDPVSIAQNAIKEAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  +   ++      P+ +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDLVIVDTAGRLAVDEQMMNEIAAIKEAIQ------PNEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFDGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|260435394|ref|ZP_05789364.1| signal recognition particle protein [Synechococcus sp. WH 8109]
 gi|260413268|gb|EEX06564.1| signal recognition particle protein [Synechococcus sp. WH 8109]
          Length = 486

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +  + +  +     + D    G  +++   L+ +D+ + V ++ V E+  K   
Sbjct: 2   FDELSARFDDAVKGLRGQDSISDTNVDGALKDVRRALLEADVSLPVVKEFVAEVRDKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V E + +++   + P     +  P V+L+ G+ G GKTT   KL
Sbjct: 62  AEVVRGVSPDQKFIQVVHEQLVEVMGGDNAPL-AKAAEAPTVVLMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + D G + ++   D +R AAI+QLK    +   +       +    +A     +A+ 
Sbjct: 121 GLHLKDQGRRALMVGADVYRPAAIEQLKTLGAQIDVEVFSLGAEAKPEDIAAAGLAKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D L++DTAGRL  ++ +M  + ++   ++      P  VL V+D+  GQ A      
Sbjct: 181 EGFDTLLVDTAGRLQIDTEMMEEMVRIRTAVQ------PDEVLLVVDSMIGQEAAELTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHDQVGITGAVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|330996193|ref|ZP_08320083.1| signal recognition particle protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329573697|gb|EGG55288.1| signal recognition particle protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 451

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKTFTDTVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N      P VIL+ G+NG GKTT+ GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELATLMGGETAELNLQ--GHPSVILMAGLNGAGKTTLSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L AA D +R AAI+QLK+  ++            DA  +A  A K+A+
Sbjct: 120 ALMLKSKKRKNPLLAACDIYRPAAIEQLKVLGEQIGIPVYSEPDNKDAVQIAQNAVKEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A+   +
Sbjct: 180 AKGYDVVIVDTAGRLAVDEQMMQEIAAIKHGIN------PDETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVNKPIKFVGTGEKMEAIDQFHPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|291294801|ref|YP_003506199.1| signal recognition particle-docking protein FtsY [Meiothermus ruber
           DSM 1279]
 gi|290469760|gb|ADD27179.1| signal recognition particle-docking protein FtsY [Meiothermus ruber
           DSM 1279]
          Length = 305

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 122/310 (39%), Positives = 178/310 (57%), Gaps = 14/310 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +SW+++L +G + T   L + I          + V EELE  LI +D+GV   Q+++EE+
Sbjct: 1   MSWLQRLKEGLSKTRDNLVKAI----PWGEDPEAVLEELEFALIAADVGVEATQEVLEEV 56

Query: 71  LT-------KRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
                    +   + ++VQ       +++      P +K    + + +  VIL+VGVNGV
Sbjct: 57  RQSGKKDLREALKQALTVQLEPDRFRAKIRKAGFNPNAKKSTVEPAGK--VILMVGVNGV 114

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I KL +     G  VM  AGDTFR+A   QL +W +R     +    GSD AALA
Sbjct: 115 GKTTTIAKLGQYYQSKGRSVMFCAGDTFRAAGGAQLGLWGERLGIPVIQGPEGSDPAALA 174

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A    +A+ +D+L++DTAGRLH    LM  + K+ R + + DP  P  V  VLDA TG
Sbjct: 175 FDAASARKARGLDLLLVDTAGRLHTKHNLMEELAKVKRSIAKADPGEPGEVWLVLDAVTG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN L Q + FH   G TG+I+TK+DGTA+GG L+PIV T  +P+ F+GVGE  +DL+PF 
Sbjct: 235 QNGLEQAKKFHQTVGLTGVIVTKLDGTAKGGVLVPIVRTLGVPIKFIGVGEKADDLQPFD 294

Query: 303 AKDFSAVITG 312
           A +F   + G
Sbjct: 295 AGEFVEALLG 304


>gi|94986767|ref|YP_594700.1| Signal renition particle GTPase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731016|emb|CAJ54379.1| Signal renition particle GTPase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 435

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 187/313 (59%), Gaps = 5/313 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           +  +   SE    + K+  G A T   L +G+  + S  ++L +   +ELE+L I SD+G
Sbjct: 124 LELEDEESEQNRLLTKIHTGLAKTREHLSQGLKTVFSHHKKLSNDFWDELEELFILSDMG 183

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           V  A+ +   L  +    ++S+   L  + +  +  +L    +    +    P VIL++G
Sbjct: 184 VETAEMLTSRLKIRATKANISIPEELSPLLANELEIILKISPRVLAIN---PPEVILLIG 240

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT I KL+ +M   G KV+LAA DTFR+AAI+QL++WA R    F     G+D 
Sbjct: 241 VNGVGKTTTIAKLAYRMHLQGKKVLLAAADTFRAAAIEQLEVWAQRIGIVFYTKGTGADP 300

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+A+EA + A  K+ DV++IDTAGRLH  + LM  + K+  V+ +  P APH  + ++D
Sbjct: 301 AAVAWEAVEHAIQKQFDVVLIDTAGRLHTKTNLMDELSKIRNVIAKKHPGAPHRTILIID 360

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL+Q ++F    G   +I+TK+DGTA+GG  I + + + IP+ ++G+GE + DL
Sbjct: 361 ATTGQNALQQTKVFKESTGIDEIIVTKLDGTAKGGVAIAVSLQYGIPITYVGLGEKMEDL 420

Query: 299 EPFVAKDFSAVIT 311
           +PF  + F+  + 
Sbjct: 421 QPFNGEKFAKALL 433


>gi|72382692|ref|YP_292047.1| signal recognition particle protein [Prochlorococcus marinus str.
           NATL2A]
 gi|72002542|gb|AAZ58344.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Prochlorococcus marinus str. NATL2A]
          Length = 487

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + + ++ +       ++ +   +E    +   L+ +D+ ++V ++ ++E+  K   
Sbjct: 2   FEELTNQFEDAVKAFKGEAKISEENVDEALKQVRRALLDADVSLSVVKEFIDEVRVKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V E +  ++   + P   +   +P VIL+ G+ G GKTT   KL
Sbjct: 62  TEVVRGIDPGQKFIQVVHEELVNVMGGENDPL-ANSEEQPTVILMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + +   K +L A DT+R AAIDQL     +   +            +A +  ++A+ 
Sbjct: 121 GLLLKEKNKKPLLVAADTYRPAAIDQLVTLGKQIDVEVFNLSSNLKPEEIAKKGLEKAKN 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D +++DTAGRL  ++ +M  + ++   ++      P  VL V+D+  GQ A      
Sbjct: 181 EGFDTVLVDTAGRLQIDTDMMGEMVRIKEAVQ------PDEVLLVVDSMIGQEAADITRS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHEKVGITGAVLTKLDGDSRGGAALSIRKISGKPIKFIGTGEKVEALQPFYPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|184200705|ref|YP_001854912.1| signal recognition particle protein [Kocuria rhizophila DC2201]
 gi|183580935|dbj|BAG29406.1| signal recognition particle protein [Kocuria rhizophila DC2201]
          Length = 521

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/313 (29%), Positives = 144/313 (46%), Gaps = 25/313 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLSEADVDATVREIRRALLEADVAVPVVREFTAIVKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++  N      P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPGQQVVKIVNEELQNVLGGETRRINL-AKTGPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---------GSDAAALA 182
            K ++D G K +L A D  R  A+ QLK+  +R        E            D   +A
Sbjct: 121 GKWLTDQGHKPVLVASDLQRPNAVTQLKVVGERAGVSVFAPEPGATSESDDPTGDPVKVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +    A++K  DV+I+DTAGRL  +  LM     +       D   P  VL V+DA  G
Sbjct: 181 RDGVDFARSKLYDVVIVDTAGRLGIDQALMNQARDI------RDAVDPDEVLFVIDAMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+   + F      TG++++K+DG ARGG  + +      P+ F   GEG++D E F 
Sbjct: 235 QDAVNTAKAFDEGVDFTGVVLSKLDGDARGGAALSVRAVTGKPIMFASTGEGVSDFEQFH 294

Query: 303 AKDFSAVITGCLD 315
               ++ I    D
Sbjct: 295 PDRMASRILDMGD 307


>gi|255010648|ref|ZP_05282774.1| signal recognition particle protein [Bacteroides fragilis 3_1_12]
 gi|313148460|ref|ZP_07810653.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137227|gb|EFR54587.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 439

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 151/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKGFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +     D   +P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTQLMGGET--VEIDTKGQPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      + +L A D +R AAI+QL++ A++            D  A+A  A K+A+
Sbjct: 120 ARMLKTKKNKRPLLVACDVYRPAAIEQLRVLAEQIDVPMYSEIDSKDPVAIAQNAIKEAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  +   ++      P+ +L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDLVIVDTAGRLAVDEQMMNEIAAIKEAIQ------PNEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFDGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKLDAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|326692471|ref|ZP_08229476.1| signal recognition particle-docking protein FtsY [Leuconostoc
           argentinum KCTC 3773]
          Length = 312

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 116/298 (38%), Positives = 174/298 (58%), Gaps = 11/298 (3%)

Query: 18  TKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           T+G   T           +++ R +D+   EELE+ L+ +D+G  +A KI +EL  +   
Sbjct: 9   TQGLTKTRTGFAAKFNQFLANFRSVDENFFEELEETLVGADVGFDMAIKISDELREEVK- 67

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-------SHRPHVILVVGVNGVGKTTVIG 129
             ++  +   DV ++I K ++ + +    +        ++   VIL VGVNGVGKTT IG
Sbjct: 68  --LANAKRPEDVKQVIIKKMVDMYEADGVNEDATMHFNANGTTVILFVGVNGVGKTTTIG 125

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K    G  V+LAA DTFR+ A  QL+ W +R     V  +  +D A++ YEA  +A
Sbjct: 126 KLATKYQQQGKSVLLAAADTFRAGATKQLQEWGERAHVPVVAGKEKADPASVVYEAVAKA 185

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D+L +DTAGRL NN  LM  + KM R+++R  P APH VL VLDATTGQNAL+Q 
Sbjct: 186 RDEHYDILFVDTAGRLQNNVNLMQELEKMKRIIQREIPDAPHEVLLVLDATTGQNALQQA 245

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           ++F   +  TG+++TKMDGTA+GG +  I    ++PV ++G GE   DL  F  ++F 
Sbjct: 246 KLFKDSSDVTGIVLTKMDGTAKGGIVFAIRNEMQLPVKWIGFGEKAQDLREFKPEEFI 303


>gi|213964418|ref|ZP_03392618.1| signal recognition particle protein [Corynebacterium amycolatum
           SK46]
 gi|213952611|gb|EEB63993.1| signal recognition particle protein [Corynebacterium amycolatum
           SK46]
          Length = 537

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 83/318 (26%), Positives = 143/318 (44%), Gaps = 29/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FESLSDRLTGALRGLGGKGRLTEADINATAREIRLALLEADVSLEVVRTFIKRIKERANE 61

Query: 77  ----KDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               + V+   +++  V+E +  +L   ++  N      P VI++ G+ G GKTT+ GKL
Sbjct: 62  IIGSQTVNPANQIIEVVNEELINILGGETRRLNLS-KQPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-------------SEIGSDA 178
           ++ ++D G   +L A D  R  A+ QL+I A+R                         + 
Sbjct: 121 ARYLTDQGHTPVLVACDLQRPGAVQQLEIVAERAGVPCFAPFPGTSLDSTHEMGTSEDNP 180

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
              A+     A+  + DV+IIDTAGRL  + +LM     +   +       PH VL V+D
Sbjct: 181 VDAAFRGLAYARQHRHDVVIIDTAGRLGIDEVLMKQARDIRDAIN------PHEVLFVID 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +  GQ+A+   + F      TG+++TK+DG ARGG  + I      P+ F   GE + D 
Sbjct: 235 SMIGQDAVETAKAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPILFASTGEKLEDF 294

Query: 299 EPFVAKDFSAVITGCLDY 316
           + F     ++ I G  D 
Sbjct: 295 DVFHPDRMASRILGMGDL 312


>gi|313894639|ref|ZP_07828202.1| signal recognition particle protein [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313440829|gb|EFR59258.1| signal recognition particle protein [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 450

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 144/307 (46%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+E    +    ++ +        ++   L+ +D+   VA+  V+ +  K  
Sbjct: 2   AFDSLSEKLQEAFQSLKGKGKITEEDVNLALRQVRTALLEADVNFMVAKDFVKSIKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V++ +  +L           S  P +I++VG+ G GKTT  GK
Sbjct: 62  GEEVFGSLNPAQTVIKIVNDELTALLGGTQSRIMIS-SKPPTIIMLVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQA 189
           L+  +   G   ML A D +R AAI QL++   +        E    +   +   A +Q+
Sbjct: 121 LAVYLRKQGKHPMLVAADVYRPAAITQLQVVGKQIDIPVFADETPGANPVDIVRRAVEQS 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV+IIDTAGRL  + +LM  +  +   +       PH +L V+D+  GQ+A+   
Sbjct: 181 THMLKDVVIIDTAGRLAIDEVLMDELSNIKAAV------RPHEILLVVDSMIGQDAVTTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G  G+I+TK+DG ARGG  + I     +P+ F GV E ++  + F     ++ 
Sbjct: 235 QTFNEKLGVDGVILTKLDGDARGGAALSIKAVTGLPIKFTGVSEKMDGFDVFYPDRMASR 294

Query: 310 ITGCLDY 316
           I    D+
Sbjct: 295 ILDLGDF 301


>gi|293601987|ref|ZP_06684443.1| signal recognition particle protein [Achromobacter piechaudii ATCC
           43553]
 gi|292819610|gb|EFF78635.1| signal recognition particle protein [Achromobacter piechaudii ATCC
           43553]
          Length = 468

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 148/317 (46%), Gaps = 28/317 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTQRLSRVVKTLRGEARLTEANTQEMLREVRMALLEADVALPVVREFVARVKEKALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           ++V+      Q ++  V + +  ++       + + S     P VIL+ G+ G GKTT  
Sbjct: 62  EEVAASLSPGQALVGVVHKELTALMGGDLGADSNELSLAVQPPAVILMAGLQGAGKTTTT 121

Query: 129 GKLSKKM----------SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GKL++ +               KV++ + D +R AAIDQLK  A +   DF+ S+     
Sbjct: 122 GKLARWLSEGQHTQHGRKTGKKKVLVVSADVYRPAAIDQLKSVAAQVGVDFLQSDPSQKP 181

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A  A   A+    DVLI+DTAGRL  +  +M  I  +  ++K      P   L V+D
Sbjct: 182 EDIARGAVDHARRHHYDVLILDTAGRLGIDEAMMREIRALHDLVK------PVETLFVVD 235

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+     F      TG+++TK+DG ARGG  + +      P+ F+GV E ++ L
Sbjct: 236 AMQGQDAVNTARAFADALPLTGVVLTKLDGDARGGAALSVRHVTGKPLKFVGVSEKLDGL 295

Query: 299 EPFVAKDFSAVITGCLD 315
           EPF     +  + G  D
Sbjct: 296 EPFYPDRMAQRVLGMGD 312


>gi|78185084|ref|YP_377519.1| Signal recognition particle protein [Synechococcus sp. CC9902]
 gi|78169378|gb|ABB26475.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Synechococcus sp. CC9902]
          Length = 492

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++     DG  +E+   L+ +D+ + V +  V E+  K   
Sbjct: 2   FDELSARFEDAVKGLRGQDKISETNVDGALKEVRRALLEADVSLPVVKDFVSEVRGKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + +  ++   + P     S  P V+L+ G+ G GKTT   KL
Sbjct: 62  AEVVRGVSPDQKFIQVVHDQLVDVMGGDNAPL-ARASEAPTVVLMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + D G + ++   D +R AAI+QLK    +   D       +    +A     +A+A
Sbjct: 121 GLHLKDQGRRSLMVGADVYRPAAIEQLKTLGGQIGVDVFSLGTDAKPEEIAAAGLAKAKA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D L++DTAGRL  ++ +M  + ++   ++      P  VL V+D+  GQ A      
Sbjct: 181 EGYDTLLVDTAGRLQIDTEMMGEMVRIRSAVQ------PDEVLLVVDSMIGQEAAELTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHEQVGITGAVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|194476608|ref|YP_002048787.1| signal recognition particle protein (SRP54) [Paulinella
           chromatophora]
 gi|171191615|gb|ACB42577.1| signal recognition particle protein (SRP54) [Paulinella
           chromatophora]
          Length = 481

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + +E +  +     + +       +++   LI +D+ + V ++ +EE+ +K   
Sbjct: 2   FDELSARFEEAVKSLKGLSAITENNVENALKQVRRALIEADVSLVVVKEFMEEVRSKSIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V E + +++   + P +   SH   V+L+ G+ G GKTT   KL
Sbjct: 62  IEVVRGIKPDQKFIQVVYEQLIEIMGANNTPLH-KQSHTVTVVLMAGLQGAGKTTAAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  + + G KV++ A D +R AAIDQL +   +   +       S    +A    ++A  
Sbjct: 121 ALYLKNQGEKVLMVAADVYRPAAIDQLFVLGKQIDVEVFTLNPESIPEDIAAAGLQKAIR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D LI+DTAGRL  ++ +M  + ++   +       P+ +L V+D+  GQ A      
Sbjct: 181 EGFDYLIVDTAGRLQIDTAMMQEMVRIRSAVN------PNEILLVVDSMIGQEAAELTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG ARGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHEQIGITGAVLTKLDGDARGGAALSIRKVSGAPIKFIGTGEKVEALQPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|163786134|ref|ZP_02180582.1| signal recognition particle protein [Flavobacteriales bacterium
           ALC-1]
 gi|159877994|gb|EDP72050.1| signal recognition particle protein [Flavobacteriales bacterium
           ALC-1]
          Length = 443

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL + +  +     + +       +E+   L+ +D+   +A++    +  K   
Sbjct: 2   FNNLSDKLDKALHVLKGHGSITEVNVAETLKEVRRALLDADVNFKIAKQFTNRVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   ++  N   S  P +IL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTTLQPGQLMVKIVKDELTELMGGDAEGINL--SGNPSIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAIDQL +  D+   +       +D  A++      A+
Sbjct: 120 ANYLKSKKTKKPLLVACDVYRPAAIDQLHVVGDQIGVEVFSDRGNNDPVAISQAGIAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   +V+IIDTAGRL  +  +M  I  + + ++      P   L V+D+ TGQ+A+   +
Sbjct: 180 ANGHNVVIIDTAGRLAVDEAMMTEISNIHKAIQ------PQETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +    G+I+TK+DG  RGG  I I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 AFNDILNFDGVILTKLDGDTRGGAAISIKSVVNKPIKFIGTGEKMEAIDVFYPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|81428324|ref|YP_395324.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78609966|emb|CAI55013.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 487

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 113/299 (37%), Positives = 176/299 (58%), Gaps = 6/299 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +G   +     + +  + ++ R +D+   +++E++LI +D+G   A KI +EL  +
Sbjct: 163 EKYDQGLEKSRKTFGQRLNALFANFRSVDESFFDDVEEMLIEADVGYETAMKIADELREE 222

Query: 74  RYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              ++V       Q ++  + +L  +         ++       V L VGVNG GKTT I
Sbjct: 223 VKLRNVKKPEAVSQAIVEKLVDLYGQEGQQEDNELHFAPEGELTVFLFVGVNGAGKTTSI 282

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK + ++  AG KV+LAAGDTFR+ AI+QL+ W  R S   V ++ GSD AA+A++A K+
Sbjct: 283 GKCAHQLEKAGKKVLLAAGDTFRAGAIEQLQEWGRRVSVPVVANKAGSDPAAVAFDAVKR 342

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ +  DVL++DTAGRL NN  LM  + K+ RV+ R    AP  VL VLDATTGQNAL Q
Sbjct: 343 AKEENFDVLLVDTAGRLQNNVNLMKELEKVKRVITREISSAPQEVLLVLDATTGQNALVQ 402

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            + F +    TG+++TK+DG+A+GG ++ +     +PV  +G+GE +NDL+ F    F 
Sbjct: 403 AKQFKSTTDVTGIVLTKLDGSAKGGIVLAVRTELHLPVKMVGLGEQMNDLQLFDPNRFV 461


>gi|225453710|ref|XP_002269433.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089055|emb|CBI38758.3| unnamed protein product [Vitis vinifera]
          Length = 367

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 182/311 (58%), Gaps = 6/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL--DDGVREELEDLLIRSDIGVAVA 63
           +  ++ S + KL  GF+ T   L   I +++    L   D V +ELE+ L+ SD G  + 
Sbjct: 57  IKEKTKSDVEKLFSGFSKTRDNL-AVIDELLLYWNLADTDRVLDELEEALLVSDFGPRIT 115

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
            KIVE L     A  +     + D + + +  +L              +P V+++VGVNG
Sbjct: 116 IKIVESLRDDILAGKLKSGSEIKDALKKSVLDLLTKKGSKTALQLGFRKPAVVIIVGVNG 175

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT +GKL+ K+   G KV++AAGDTFR+AA DQL+IWA+RT  + V +E   + A++
Sbjct: 176 GGKTTSLGKLAYKLKKEGAKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGEKAKASS 235

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A K+ + +  D+++ DT+GRLH N  LM  +    + + ++   AP+ +L VLD T
Sbjct: 236 VLSQAVKRGKEQGFDIVLCDTSGRLHTNYSLMEELIACKKAVGKVVSGAPNEILLVLDGT 295

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L Q   F+ V G +GLI+TK+DG+ARGG ++ +V    IPV F+GVGEG+ DL+P
Sbjct: 296 TGLNMLPQAREFNEVVGISGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQP 355

Query: 301 FVAKDFSAVIT 311
           F A+ F   I 
Sbjct: 356 FDAEVFVNAIF 366


>gi|302542213|ref|ZP_07294555.1| signal recognition particle protein [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459831|gb|EFL22924.1| signal recognition particle protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 521

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 149/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  ++++  +   
Sbjct: 2   FDTLSDRLAATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRSFIKQVKERSLG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVIKIVNEELIGILGGDARRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 121 GRWLKGQGHAPLLVACDLQRPNAVNQLSVVAERAGVAVFAPEPGNGVGDPVKVAQDSIEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+ DV+I+DTAGRL  +  LM     +       D  +P  VL V+DA  GQ+A+  
Sbjct: 181 AKTKQHDVVIVDTAGRLGIDEELMRQAADI------RDAVSPDEVLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       + F   GE ++D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGRQIMFASNGEKLDDFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I G  D 
Sbjct: 295 RILGMGDM 302


>gi|300777801|ref|ZP_07087659.1| signal recognition particle protein [Chryseobacterium gleum ATCC
           35910]
 gi|300503311|gb|EFK34451.1| signal recognition particle protein [Chryseobacterium gleum ATCC
           35910]
          Length = 453

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   KL + + +I    ++ +       +E+   L+ +D+   VA+ + + +  K   
Sbjct: 2   FNSLQDKLDKALHNISGRGKITEINVAETVKEIRRALVDADVNYKVAKDLTKRVQDKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q +   V + +  ++    +  N   S +P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTSLTPGQLMTKIVHDELVDLMGGSQEGINL--SGKPTVILIAGLQGSGKTTFSGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAIDQLK+   +        E  ++ + +A  A   A+
Sbjct: 120 ANYLQTKRNKKPLLVACDVYRPAAIDQLKVLGGQIKVPVYTEEGSTNPSTIAENAINFAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   DV+I+DTAGRL  +  +M  I  +   +K      P   L V+D+ TGQ+A+   +
Sbjct: 180 SNGHDVVIVDTAGRLAIDEQMMNEIKSVHYFIK------PQETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I    + P+ F+  GE +  L+ F  +  +  I
Sbjct: 234 AFNDALNFDGVVLTKLDGDTRGGAALTIRSVVEKPIKFISTGEKMEALDLFYPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|323344206|ref|ZP_08084432.1| signal recognition particle protein [Prevotella oralis ATCC 33269]
 gi|323094935|gb|EFZ37510.1| signal recognition particle protein [Prevotella oralis ATCC 33269]
          Length = 449

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKNFTDTVKKKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++   +       S RP ++L+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPSQLMVKIVHDELAELMGGEAAELKL--SGRPAIVLMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +        +L A D +R AAIDQLK+  ++            +   +A  A K+A+
Sbjct: 120 ANMLKSKQKRNPLLVACDVYRPAAIDQLKVVGEQVGVPVYSEPDSKNVIEIATHAVKEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I ++   L       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGNDVVIVDTAGRLAIDEEMMTEISELKNALN------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFVGTGEKMEAIDVFHPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|42782939|ref|NP_980186.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           ATCC 10987]
 gi|42738866|gb|AAS42794.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           ATCC 10987]
          Length = 329

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 184/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D+    R++D+   EELE++LI +D+GV+
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVS 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVG 118
              +++++L  +   +++   + +  V       +      F  +         V+L VG
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPKEVQAVISEKLIEIYKGDSDFTNEINVQKDGLTVVLFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD 
Sbjct: 128 VNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+D
Sbjct: 188 AAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVID 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL
Sbjct: 248 ATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307

Query: 299 EPFVAKDFS 307
           + F  + + 
Sbjct: 308 QQFDPEQYV 316


>gi|289644822|ref|ZP_06476875.1| signal recognition particle protein [Frankia symbiont of Datisca
           glomerata]
 gi|289505378|gb|EFD26424.1| signal recognition particle protein [Frankia symbiont of Datisca
           glomerata]
          Length = 530

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 151/307 (49%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +  + +    RL +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FDTLSSRLDKAFSSLRGKGRLSEADISATAREIRVALLEADVALPVVRAFVGAVRERARG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+V+  V++ +  +L   +    +     P VIL+ G+ G GKTT+ GKL
Sbjct: 62  EEVSTSLNPAQQVIKIVNQELVTILGGGTTTLRF-ARTPPTVILLAGLQGTGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + + + G   +L A D  R  A+ QL++ A +   D    E G+   D  A+A  A + 
Sbjct: 121 GRWLKEQGHTPLLVAADLQRPNAVTQLQVVAGQAGVDVYAPEPGNGVGDPVAVARAAVEH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ +  DV+++DTAGRL  ++ +M     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 ARRRLHDVVVVDTAGRLGVDADMMRQAADI------RDVTSPDEILFVVDAMIGQDAVTT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G TG+++TK+DG ARGG  + +      P+ F   GE ++D + F  +  ++
Sbjct: 235 AQAFADGVGFTGVVLTKLDGDARGGAALSVAHLTGRPIMFASTGEALDDFDVFHPERMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|294661294|ref|YP_003573170.1| hypothetical protein Aasi_1773 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336445|gb|ACP21042.1| hypothetical protein Aasi_1773 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 442

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 144/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S  L + I  +    ++ +       +E+   LI++D+   VA++I +++ T    
Sbjct: 2   FENLSNNLAKAIKTLKGQGKITEINVAATVKEIRRALIQADVNYKVAKQITDDIKTNALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           KDV       Q     VS+ + K++   S+  + + + +P +IL+ G+ G GKTT   KL
Sbjct: 62  KDVLAAVSPGQLFTKVVSDELTKLMG--SEKASINLNGKPAIILMAGLQGSGKTTFSAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +      V+L A D +R AA +QL +   +   +        DA  +A E  + A+ 
Sbjct: 120 ANYLKRQNKSVLLVACDIYRPAAAEQLHVLGQQIDVEVFSKVDHKDAIQIAQEGIEYAKN 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
               V+IIDTAGR   +  +M  I K+   +K          L V+DA  GQ+A+   + 
Sbjct: 180 THKQVVIIDTAGRQTVDVGMMQEIKKLQDTVKPA------ETLFVVDAMVGQDAVTTAQG 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     +  I 
Sbjct: 234 FYEQLHFDGIVLTKLDGDTRGGAALSIRAVVSKPIKFIGTGEKLTDLDLFYPDRMAQRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|114771713|ref|ZP_01449117.1| signal recognition particle-docking protein FtsY [alpha
           proteobacterium HTCC2255]
 gi|114547785|gb|EAU50675.1| signal recognition particle-docking protein FtsY [alpha
           proteobacterium HTCC2255]
          Length = 502

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 126/271 (46%), Positives = 185/271 (68%), Gaps = 1/271 (0%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           DD + E LE+LLI +D+GV  + ++   +      K VSV  V   +   + ++L P++K
Sbjct: 230 DDNMLESLEELLISADMGVDTSLRVSANMADGNLGKKVSVNEVKILLGNEVARILEPVAK 289

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           P    +S +P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA++QL++W
Sbjct: 290 PMPL-YSQKPQVVLVVGVNGSGKTTTIGKLASQFRSAGKSVVIAAGDTFRAAAVEQLQVW 348

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            +R     + +  GSD A+LA++A  + +   VD+L+IDTAGRL N   LM  + K++RV
Sbjct: 349 GERAGVPVLTAPEGSDPASLAFDAMNKCKNDNVDLLMIDTAGRLQNRKDLMEELDKIVRV 408

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +++ DP APH+ L VLDATTGQNA+RQVE+F  V+  TGL+MTK+DGTA+GG L+ +   
Sbjct: 409 IQKNDPSAPHNTLLVLDATTGQNAIRQVEVFQEVSKVTGLVMTKLDGTAKGGVLVALADK 468

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             +P++ +GVGE I+DL+ F  KDF+  +TG
Sbjct: 469 FGLPIHAIGVGEQIDDLQAFDPKDFAKALTG 499


>gi|3265154|gb|AAC24713.1| signal recognition particle [Streptomyces lividans]
          Length = 550

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +   +    E+   L+ +D+ + V +  ++++  +   
Sbjct: 36  FDTLSDRLSATFKSLRGKGRLTEADIDATAREIRIALLEADVALPVVRAFMKKVKERSLG 95

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+VL  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 96  AEVSKALNPAQQVLKIVNEELVGILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 154

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              + + G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 155 GHWLKEQGHSPLLVACDLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEF 214

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  D++I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ A+  
Sbjct: 215 AKAKVHDLVIVDTAGRLGIDQELMQQAADI------RDAVSPDEILFVVDAMIGQEAVNT 268

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I      P+ F   GE ++D + F     ++
Sbjct: 269 AEAFRDGVGFDGVVLSKLDGDARGGAALSIASVTGKPIMFASNGEKLDDFDAFHPDRMAS 328

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 329 RILDMGDL 336


>gi|119717490|ref|YP_924455.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nocardioides
           sp. JS614]
 gi|119538151|gb|ABL82768.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nocardioides
           sp. JS614]
          Length = 523

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 148/307 (48%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L +   ++    RL +   +    E+   L+ +D+ + V ++ V  +  +   
Sbjct: 2   FATLSDRLADTFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVKEFVGAVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+  KL
Sbjct: 62  EEVSQALNPAQQVVKIVNEELVAILGGEARRLRY-AKTGPTVIMLAGLQGAGKTTLAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +  + + G   +L A D  R  A++QL++  +R        E G+   D   +A  + ++
Sbjct: 121 ALWLKEQGKSPLLVAADLQRPNAVNQLQVNGERAGVPVFAPEPGNGVGDPVGVARASIEE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+I+DTAGRL  ++ +M     +       D   P  VL V+DA  GQ+A+  
Sbjct: 181 AKRTLHDVVIVDTAGRLGVDAEMMQQAADI------RDAVQPDEVLFVVDAMIGQDAVVT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G  G+++TK+DG ARGG  + I      PV F   GE + D + F     ++
Sbjct: 235 AQAFLDGVGYDGVVLTKLDGDARGGAALSIASITGKPVMFASAGEKLTDFDLFHPDRMAS 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|163782277|ref|ZP_02177275.1| cell division protein FtsY [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882310|gb|EDP75816.1| cell division protein FtsY [Hydrogenivirga sp. 128-5-R1-1]
          Length = 460

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 119/307 (38%), Positives = 188/307 (61%), Gaps = 3/307 (0%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V  +  S + KL KG   T   ++ GI  +   R++DD + EELE+LL+++D+GV  A  
Sbjct: 155 VEEKKESLLDKLKKGLRKTKESVEFGI--VFRGRKVDDELFEELEELLVKADVGVKTAVN 212

Query: 66  IVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +VE+L      K++     L ++  E + ++L       N     +P V+L +GVNG GK
Sbjct: 213 LVEDLRKTAIRKNIKSSEELKEITKEKVKELLRGCEGKLNLPTEKKPVVVLFLGVNGSGK 272

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ + +  G +V+L A DTFR+AAI+QL++WA R+ AD      G+D A++ YE
Sbjct: 273 TTTIGKLAHRFTKEGKRVLLVAADTFRAAAIEQLEVWAQRSGADITKKHEGADPASVVYE 332

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A  +  DV++IDTAGRLH    L+  + K+ +V+++L P  P   L VLDAT GQN
Sbjct: 333 GVDRAIREGHDVVLIDTAGRLHTKEPLIQELRKVKKVIQKLAPEEPSETLLVLDATIGQN 392

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           +++Q ++F      +G+++TK+DG+A+GG +I I    KIP+  +GVGEGI+DL+PF   
Sbjct: 393 SIQQAKVFKEAVDISGIVVTKLDGSAKGGAVIAICRELKIPIKLIGVGEGIDDLQPFSVD 452

Query: 305 DFSAVIT 311
           ++   + 
Sbjct: 453 EYVDALF 459


>gi|303254469|ref|ZP_07340574.1| signal recognition particle protein [Streptococcus pneumoniae
           BS455]
 gi|303258923|ref|ZP_07344902.1| signal recognition particle protein [Streptococcus pneumoniae
           SP-BS293]
 gi|303264276|ref|ZP_07350196.1| signal recognition particle protein [Streptococcus pneumoniae
           BS397]
 gi|302598555|gb|EFL65596.1| signal recognition particle protein [Streptococcus pneumoniae
           BS455]
 gi|302639866|gb|EFL70322.1| signal recognition particle protein [Streptococcus pneumoniae
           SP-BS293]
 gi|302646088|gb|EFL76315.1| signal recognition particle protein [Streptococcus pneumoniae
           BS397]
          Length = 523

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 140/307 (45%), Gaps = 17/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFESLTERLQNVFKNLRKKGKISESDVQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V E +  +L   +            + ++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEIIKSPKIPIII-MMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+      + ++ A D +R AAIDQLK    +             A  +  +  +QA
Sbjct: 121 LANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D ++IDTAGRL  + +LM  +  +  +        P+ +L V+DA  GQ A    
Sbjct: 181 QTNHNDYVLIDTAGRLQIDELLMNELRDVKAL------AQPNEILLVVDAMIGQEAANVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+A    TG+I+TK+DG  RGG  + +      P+ F G GE I D+E F     S+ 
Sbjct: 235 REFNAQLEVTGVILTKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMSSR 294

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 295 ILGMGDM 301


>gi|302345690|ref|YP_003814043.1| signal recognition particle protein [Prevotella melaninogenica ATCC
           25845]
 gi|302150218|gb|ADK96480.1| signal recognition particle protein [Prevotella melaninogenica ATCC
           25845]
          Length = 450

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 142/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKTFTDTVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++   +   N   S RP +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIVHDELAELMGGEAVGLNL--SGRPSIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AAIDQLK+  ++            +   +A  A  +A+
Sbjct: 120 ANMLKTKEHKNPLLVACDVYRPAAIDQLKVVGEQVGVAVYSEPENKNVNEIADHALAEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+IIDTAGRL  +  +M  I  +   +       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGHDVVIIDTAGRLAVDEEMMNEIESLKNHVH------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFNGVVLTKLDGDTRGGAALSIRTVVTKPIKFIGTGEKMEAIDVFHPGRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|13473694|ref|NP_105262.1| signal recognition particle protein [Mesorhizobium loti MAFF303099]
 gi|14024445|dbj|BAB51048.1| signal recognition particle protein [Mesorhizobium loti MAFF303099]
          Length = 532

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   +  +     L +        E+   L+ +D+ + V +   +++  K   
Sbjct: 2   FESLQERLGSILNGLTGRGALSEADVSAALREVRRALLEADVALEVVRSFTDKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + +  ML       + + +  P VI++VG+ G GKTT   K+
Sbjct: 62  AAVLKSIKPGQMVVKIVHDELVDMLGAEGVAIDLN-APAPVVIMMVGLQGSGKTTTSAKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      KV++A+ DT R AA +QL+   ++T    +    G +   +A  A + A+
Sbjct: 121 AKRLTERQNKKVLMASLDTRRPAAQEQLRQLGEQTKVATLPIIAGQNPVDIARRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +V       +PH +L V D+ TGQ+A+   +
Sbjct: 181 LGGHDVVILDTAGRTHIDEPLMVEMADIKKV------SSPHEILLVADSLTGQDAVNLAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +G GE ++ LE F  K  +  I
Sbjct: 235 SFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGTGEKMDGLEEFHPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|302522152|ref|ZP_07274494.1| signal recognition particle protein [Streptomyces sp. SPB78]
 gi|302431047|gb|EFL02863.1| signal recognition particle protein [Streptomyces sp. SPB78]
          Length = 561

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 147/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +   +    E+   L+ +D+ + V +  ++++  +   
Sbjct: 50  FDTLSDRLSATFKSLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIKKVKERALG 109

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 110 EEVSKALNPAQQVIKIVNEELVGILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 168

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G   +L A D  R  A++QL + A+R        + G+   D   +A ++ + 
Sbjct: 169 GRWLQGQGHSPLLVACDLQRPNAVNQLSVVAERAGVGIYAPQPGNGVGDPVQVAKDSVEY 228

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+ DV+I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 229 ARTKQFDVVIVDTAGRLGIDQELMRQAADI------RDAVSPDEILFVVDAMIGQDAVNT 282

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       V F   GE + D + F     ++
Sbjct: 283 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGKQVMFASNGEKLEDFDAFHPDRMAS 342

Query: 309 VITGCLD 315
            I    D
Sbjct: 343 RILDMGD 349


>gi|300741688|ref|ZP_07071709.1| signal recognition particle protein [Rothia dentocariosa M567]
 gi|300380873|gb|EFJ77435.1| signal recognition particle protein [Rothia dentocariosa M567]
          Length = 528

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 143/313 (45%), Gaps = 25/313 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V +K    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLSEADIDATVREIRRALLDADVAVPVVRKFAAHIKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++  N      P +I++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPSQQIVKIVNEELITILGGQTRRINM-AKTGPTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---------GSDAAALA 182
           +K +   G   +L A D  R  A+ QLK+  +R                     D   +A
Sbjct: 121 AKWLKGQGHTPILVASDLQRPNAVTQLKVVGERAGVPVFAPHPGVTSEFDTPTGDPVQVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +   +A+AK  DV+I+DTAGRL  ++ LM     +   ++      P  VL V+DA  G
Sbjct: 181 RDGVAEARAKLHDVVIVDTAGRLGVDAELMQQARNIRDAIE------PQEVLFVIDAMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+     F+     TG++++K+DG ARGG  + +      P+ F   GE ++D E F 
Sbjct: 235 QDAVNTANAFNEGVDFTGVVLSKLDGDARGGAALSVASVTGKPIMFASTGENVDDFEQFH 294

Query: 303 AKDFSAVITGCLD 315
               ++ I    D
Sbjct: 295 PDRMASRILDMGD 307


>gi|227543207|ref|ZP_03973256.1| signal recognition particle protein [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181016|gb|EEI61988.1| signal recognition particle protein [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 538

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 84/311 (27%), Positives = 149/311 (47%), Gaps = 30/311 (9%)

Query: 28  LKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--- 80
           + + +T +    +L +        E+   L+ +D+ + V +  ++ +  +   +DVS   
Sbjct: 1   MSDALTGLRGKGKLSEADINATAREIRLALLEADVSLPVVRGFIKRIKERAGGQDVSQAL 60

Query: 81  --VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
              Q+V+  V+E + ++L   ++       + P VI++ G+ G GKTT+ GKL+K ++  
Sbjct: 61  NPAQQVVKIVNEELIEILGGETRHLQM-AKNSPTVIMLAGLQGAGKTTLAGKLAKHLASQ 119

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSDAAALAYE 184
           G   ML A D  R  A+ QL+I  +R        +                 D   +A +
Sbjct: 120 GHTPMLVACDLQRPGAVQQLQIVGERAGVPTFAPDPGTTLDTTEHEMGTSHGDPVLVAKQ 179

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++A+ ++ DV+I+DTAGRL  +  LM     +       D   P  VL V+DA  GQ+
Sbjct: 180 GIEEAKRQQRDVVIVDTAGRLGIDEELMRQASNI------RDAVNPDEVLFVIDAMIGQD 233

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A++  + F    G TG+++TK+DG ARGG  + I      P+ F   GE ++D + F  +
Sbjct: 234 AVQTAQAFRDGVGFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLDDFDVFHPE 293

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 294 RMASRILGMGD 304


>gi|193212765|ref|YP_001998718.1| signal recognition particle protein [Chlorobaculum parvum NCIB
           8327]
 gi|193086242|gb|ACF11518.1| signal recognition particle protein [Chlorobaculum parvum NCIB
           8327]
          Length = 449

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+     +     +++        +++  L+ +D+   VA+K+VE++  K   
Sbjct: 2   FDNLSDKLELTFKKLAGQATINEVNIGIAMRDIKRALLSADVNYKVAKKLVEDIREKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V++ + +++   ++P N      P +++V G+ G GKTT   KL
Sbjct: 62  EEVIKSVSPAQMIVKIVNDELAEIMGGENQPLNLPPKKMPAIVMVAGLQGSGKTTFCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K++   G   ML A D +R AAI+QLK   ++        E   DA   A    + A+ 
Sbjct: 122 AKRLKKNGKNPMLVAADVYRPAAIEQLKTLGEQIDVPVYSVEE-QDAMKAALGGLEAAKN 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLI+DTAGRL  +  +MA    +   L       P  +L V+D+  GQ A+   + 
Sbjct: 181 GAKDVLIVDTAGRLQIDEAMMAEAEALKNKLS------PDELLFVVDSMMGQEAVNTAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG +RGG  + I    + P+ F+ VGE ++DL+ F     +  I 
Sbjct: 235 FNERLDFDGVVLTKLDGDSRGGAALSIRQVVEKPIKFMSVGEKVDDLDLFYPDRMAQRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|206971368|ref|ZP_03232319.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           AH1134]
 gi|218233848|ref|YP_002368648.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           B4264]
 gi|228922601|ref|ZP_04085901.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228954123|ref|ZP_04116152.1| Cell division protein ftsY [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960063|ref|ZP_04121727.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229081102|ref|ZP_04213612.1| Cell division protein ftsY [Bacillus cereus Rock4-2]
 gi|229111318|ref|ZP_04240871.1| Cell division protein ftsY [Bacillus cereus Rock1-15]
 gi|229146418|ref|ZP_04274789.1| Cell division protein ftsY [Bacillus cereus BDRD-ST24]
 gi|229152046|ref|ZP_04280241.1| Cell division protein ftsY [Bacillus cereus m1550]
 gi|229180123|ref|ZP_04307467.1| Cell division protein ftsY [Bacillus cereus 172560W]
 gi|229192016|ref|ZP_04318986.1| Cell division protein ftsY [Bacillus cereus ATCC 10876]
 gi|296504342|ref|YP_003666042.1| cell division protein FtsY [Bacillus thuringiensis BMB171]
 gi|206734140|gb|EDZ51311.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           AH1134]
 gi|218161805|gb|ACK61797.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           B4264]
 gi|228591567|gb|EEK49416.1| Cell division protein ftsY [Bacillus cereus ATCC 10876]
 gi|228603332|gb|EEK60809.1| Cell division protein ftsY [Bacillus cereus 172560W]
 gi|228631395|gb|EEK88029.1| Cell division protein ftsY [Bacillus cereus m1550]
 gi|228637051|gb|EEK93510.1| Cell division protein ftsY [Bacillus cereus BDRD-ST24]
 gi|228672094|gb|EEL27385.1| Cell division protein ftsY [Bacillus cereus Rock1-15]
 gi|228702146|gb|EEL54622.1| Cell division protein ftsY [Bacillus cereus Rock4-2]
 gi|228799579|gb|EEM46532.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805689|gb|EEM52279.1| Cell division protein ftsY [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228837030|gb|EEM82371.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|296325394|gb|ADH08322.1| cell division protein ftsY [Bacillus thuringiensis BMB171]
          Length = 329

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 121/310 (39%), Positives = 187/310 (60%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GVA
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVA 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   + +  V       I+K     S   N        V+L V
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSDFSNEINMQEDQ-LTVVLFV 126

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 127 GVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 187 PAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVI 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 247 DATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDD 306

Query: 298 LEPFVAKDFS 307
           L+ F  + + 
Sbjct: 307 LQQFDPEQYV 316


>gi|72161065|ref|YP_288722.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermobifida
           fusca YX]
 gi|71914797|gb|AAZ54699.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermobifida
           fusca YX]
          Length = 535

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L    + +    RL +        E+   L+ +D+ + V ++ +  +  +   
Sbjct: 2   FETLSDRLTTVFSSLRGKGRLSEEDINTTAREIRVALLEADVALPVVREFIARVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V E + ++L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSKALNPAQQVIKIVHEELIEVLGGETRTIRF-AKTPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +K ++D     +L A D  R  A+ QL++  +R +      E G+   D   +A  +   
Sbjct: 121 AKWLADQRNTPLLVAADLQRPNAVTQLQVLGERANVAVYAPEPGNGVGDPVEVARSSIDY 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    +V+IIDTAGRL  +  +M     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 ARRNNYNVVIIDTAGRLGIDEEMMQQAADI------RDAVSPDEILFVVDAMIGQDAVTT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G   + +TK+DG ARGG  + I      P+ F   GE + D + F     ++
Sbjct: 235 AQAFLEGVGYDAVALTKLDGDARGGAALSIRHLTGRPIMFASTGEKLEDFDLFHPDRMAS 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|116628140|ref|YP_820759.1| signal recognition particle receptor (docking protein)
           [Streptococcus thermophilus LMD-9]
 gi|116101417|gb|ABJ66563.1| signal recognition particle-docking protein FtsY [Streptococcus
           thermophilus LMD-9]
          Length = 463

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 117/314 (37%), Positives = 175/314 (55%), Gaps = 7/314 (2%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           + + K  +E      K  +    T       + +  ++ RR+D+   E+LE++LI SD+G
Sbjct: 150 LPDSKTETEQ----EKYNRTLKKTRTGFAARLNEFFANFRRVDEEFFEQLEEILILSDVG 205

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           V VA ++ E+L  +   ++V     L    + +L+             +F     VIL V
Sbjct: 206 VNVATQLTEDLRYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYEEQINFQDGLTVILFV 265

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G  VML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 266 GVNGVGKTTSIGKLANKYKQEGKNVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGAEKAD 325

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  L
Sbjct: 326 PASVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLAL 385

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TGL++TK+DG+A+GG ++ I     IPV  +G GE I+D
Sbjct: 386 DASTGQNALNQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKIDD 445

Query: 298 LEPFVAKDFSAVIT 311
           +  F +++F   + 
Sbjct: 446 IGEFHSEEFMQSLL 459


>gi|329121418|ref|ZP_08250043.1| signal recognition particle protein [Dialister micraerophilus DSM
           19965]
 gi|327469708|gb|EGF15175.1| signal recognition particle protein [Dialister micraerophilus DSM
           19965]
          Length = 452

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 147/308 (47%), Gaps = 17/308 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F +   KL++   D+    +L     DG   E+   L+ +D+   VA+  + ++  K  
Sbjct: 2   AFENLGDKLQKAFKDLRGKGKLSESDIDGALREVRKALLEADVNFKVAKDFIAQVREKAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V + + ++L           S     I++VG+ G GKTT +GK
Sbjct: 62  GEEVFGSLKPDQTVIKIVRDELTQLLGGTQSKITMS-SKGLTTIMLVGLQGAGKTTTVGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G   +LAA D +R AAI QL++ A +        E   +  A+A EA + A+
Sbjct: 121 LALMLKKKGKNPLLAACDVYRPAAIKQLQVLASQVGVSAFTIEGSKEPVAIAKEAVEYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV++IDTAGRL  +++LM  +  +   +       PH +L VLD+ TGQ+A+   +
Sbjct: 181 KHNNDVILIDTAGRLTIDTVLMEELKNIKAAV------MPHEILLVLDSMTGQDAVTTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAV 309
            F    G  G ++TKMDG ARGG  + I      P+  +GV E ++  LE F     +  
Sbjct: 235 AFDESLGIDGTVLTKMDGDARGGAALSIKAVTGKPIKLIGVSEKLDGGLEDFYPDRMAGR 294

Query: 310 ITGCLDYG 317
           I    D  
Sbjct: 295 ILDLGDLA 302


>gi|313891433|ref|ZP_07825049.1| signal recognition particle protein [Dialister microaerophilus UPII
           345-E]
 gi|313120208|gb|EFR43384.1| signal recognition particle protein [Dialister microaerophilus UPII
           345-E]
          Length = 452

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 146/308 (47%), Gaps = 17/308 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F +   KL++   D+    +L     DG   E+   L+ +D+   VA+  + ++  K  
Sbjct: 2   AFENLGDKLQKAFKDLRGKGKLSESDIDGALREVRKALLEADVNFKVAKDFIAQVREKAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V + + ++L           S     I++VG+ G GKTT +GK
Sbjct: 62  GEEVFGSLKPDQTVIKIVRDELTQLLGGTQSKITMS-SKGLTTIMLVGLQGAGKTTTVGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G   +L A D +R AAI QL++ A +        E   +  A+A EA + A+
Sbjct: 121 LALMLKKKGKNPLLVACDVYRPAAIKQLQVLASQVGVSAFTIEGSKEPVAIAKEAVEYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV++IDTAGRL  +++LM  +  +   +       PH +L VLD+ TGQ+A+   +
Sbjct: 181 KHNNDVILIDTAGRLTIDTVLMEELKNIKAAV------MPHEILLVLDSMTGQDAVTTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAV 309
            F    G  G ++TKMDG ARGG  + I      P+  +GV E ++  LE F     +  
Sbjct: 235 AFDESLGIDGTVLTKMDGDARGGAALSIKAVTGKPIKLIGVSEKLDGGLEDFYPDRMAGR 294

Query: 310 ITGCLDYG 317
           I    D  
Sbjct: 295 ILDLGDLA 302


>gi|241895652|ref|ZP_04782948.1| signal recognition particle-docking protein FtsY [Weissella
           paramesenteroides ATCC 33313]
 gi|241871230|gb|EER74981.1| signal recognition particle-docking protein FtsY [Weissella
           paramesenteroides ATCC 33313]
          Length = 351

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 182/308 (59%), Gaps = 11/308 (3%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            KL  G   T     E     +++ R +D+   ++LE+ LI +D+G   A ++ +EL  +
Sbjct: 42  EKLDTGLKKTKKTWSERWNAFMANFRSVDEDFFDDLEETLIGADVGAQTAMQLTDELRDE 101

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFS-----HRPHVILVVGVNGVGKTT 126
              ++   ++   DVS++I   L+ L  S+  N D S       P VIL+VGVNGVGKTT
Sbjct: 102 VKLQNAKSKQ---DVSKVIVDKLVDLYRSQGVNEDASMHFAPEGPTVILLVGVNGVGKTT 158

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKLS    +AG KV+LAA DTFR+ A +QL  W +R     V     +D A++ ++  
Sbjct: 159 TIGKLSAYYKNAGKKVVLAAADTFRAGATEQLVAWGERNDIPVVTGSSKADPASVVFDGV 218

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K A   + D+L +DTAGRL NN  LM  + KM R++ R  P+ P  VL  LDATTGQNA+
Sbjct: 219 KTAIDTQADILFVDTAGRLQNNVNLMQELSKMKRIITRELPNEPQEVLLTLDATTGQNAV 278

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +Q ++F      TG+++TK+DGTA+GG ++PI     +PV ++G+GE + D++PF A DF
Sbjct: 279 QQAKLFKDSTDVTGIVLTKLDGTAKGGIILPIRNELHLPVKWVGLGEKVTDIQPFEANDF 338

Query: 307 SAVITGCL 314
           +  + G L
Sbjct: 339 AKSLFGSL 346


>gi|218248495|ref|YP_002373866.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 8801]
 gi|218168973|gb|ACK67710.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 8801]
          Length = 499

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 182/315 (57%), Gaps = 5/315 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + + +++E ++W+++L +G   T   L   +  I+    L+     E+E LL+++D+G+ 
Sbjct: 183 TPENISAEEINWLKRLRQGLGKTRRGLVNQLKAIVGQGPLNQDAVMEIEALLLQADVGLE 242

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM----PLSKPFNWDFSHRPHVILVV 117
               I+ +L  K   + +  ++ +  + E++ ++L      +  P         ++ L+ 
Sbjct: 243 ATDYIINKLQNKLREESLPSEQAIEYLKEILREILDRPLQQVKNPGFAPEKDTLNIWLMT 302

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT IGKL+     +G   M+AA DTFR+AA++Q+K+W +RT+   + +    +
Sbjct: 303 GVNGAGKTTTIGKLAHLSQKSGYSCMIAAADTFRAAAVEQVKVWGERTNTPVIANPGKNT 362

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++    AQ+++ ++L++DTAGRL N   LM  + K+ R++ +  P A    L V
Sbjct: 363 DPAAVVFDGIAAAQSRQTELLLVDTAGRLQNKKNLMEELSKIRRIIDKKAPDAQVEALLV 422

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + I     +P+ F+G GEGI 
Sbjct: 423 LDATLGQNGLRQAEVFSESAKLSGVVLTKLDGTAKGGVALAIAQQLNLPIRFIGAGEGIE 482

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF + +F   + 
Sbjct: 483 DLRPFSSYEFVEALL 497


>gi|331269654|ref|YP_004396146.1| signal recognition particle protein [Clostridium botulinum
           BKT015925]
 gi|329126204|gb|AEB76149.1| signal recognition particle protein [Clostridium botulinum
           BKT015925]
          Length = 451

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 155/305 (50%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL++ +  +    +L +  ++E + +    L+ +D+   + +  V+    K  
Sbjct: 2   AFEGLAEKLQDTLKKLRGKGKLSEKDIKEAMREVKLALLEADVNYKIVRNFVKTTGEKCL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V++ + +++        +  S    VI++VG+ G GKTT+ GK
Sbjct: 62  GEEVMKSLTPGQQVVKIVNDELKELMGSTESKIEFS-STGLTVIMLVGLQGAGKTTMAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++     K +L A D +R AAI QL++  ++            +   +A  + + A+
Sbjct: 121 LALQLRKNNKKPLLVACDIYRPAAIKQLQVVGNQIDIPVFSMGDKVNPVDIAKASIEHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K +V+IIDTAGRLH +  LM  +  +   ++      P+ +L V+D+ TGQ+A+   E
Sbjct: 181 NNKNNVVIIDTAGRLHIDEALMDELENIKTSVE------PNEILLVVDSMTGQDAVNVSE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG  RGG  + I      P+ ++G+GE +NDLE F     ++ I
Sbjct: 235 TFNNKLDISGVILTKLDGDTRGGAALSIKAVTGKPIKYVGLGEKMNDLEVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|110597634|ref|ZP_01385919.1| signal recognition particle-docking protein FtsY [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340754|gb|EAT59231.1| signal recognition particle-docking protein FtsY [Chlorobium
           ferrooxidans DSM 13031]
          Length = 317

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 121/305 (39%), Positives = 185/305 (60%), Gaps = 6/305 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + KLT+G   T   L++ ++ I   +  +D+   EELE +L+ +D+GV     IV+ +  
Sbjct: 9   LSKLTEGLGKTRDTLRDKLSVITQGKTEIDEEFLEELETILVAADVGVETTLGIVDAITE 68

Query: 73  KR----YAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +     Y  +  +  +L  ++ +L+ +  +     F+     +P+VIL+VGVNG GKTT 
Sbjct: 69  RAKQETYRSETELNNMLMEEIQQLLQESGVDHPVDFDAPLPAKPYVILIVGVNGAGKTTS 128

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           + KL+     AG KV++AA DTFR+AA +QL+IWADR     +    GSD A++ Y+A  
Sbjct: 129 VAKLAHNYDKAGKKVIIAAADTFRAAAYEQLQIWADRAGVPMLGQAQGSDPASVVYDAVS 188

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A+  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQNA++
Sbjct: 189 AAVARNADVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQNAVQ 248

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F      TGL++TK+DGT++GG ++ I     +PV ++GVGE I+DL+ F   +F 
Sbjct: 249 QAREFTKFVKVTGLVVTKLDGTSKGGIVLSISRELGLPVKYIGVGEKIDDLQLFDRAEFV 308

Query: 308 AVITG 312
             + G
Sbjct: 309 GALLG 313


>gi|193213473|ref|YP_001999426.1| signal recognition particle-docking protein FtsY [Chlorobaculum
           parvum NCIB 8327]
 gi|193086950|gb|ACF12226.1| signal recognition particle-docking protein FtsY [Chlorobaculum
           parvum NCIB 8327]
          Length = 320

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 183/312 (58%), Gaps = 6/312 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + +L +G   T   LKE +  +   +  +DD   EELE++L+ +D+GV     IV+ +  
Sbjct: 9   LSRLKEGLTKTRDTLKEKLAVVTKGKTEVDDEFLEELENILVAADVGVETTLDIVDAVTE 68

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTV 127
           +   K    +  L + V   I  +L+         F+   S +P+VI++VGVNG GKTT 
Sbjct: 69  RSKGKTYRSEDELNEMVMGEIRNLLVESGHEHPVDFDAPLSAKPYVIMIVGVNGAGKTTS 128

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           + KL+     AG KV++AA DTFR+AA +QLKIWADR     +    G+D A++ +++  
Sbjct: 129 VAKLAHNYDKAGKKVVIAAADTFRAAAYEQLKIWADRAGVPIIGQGQGADPASVVFDSVS 188

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A +K  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQNA++
Sbjct: 189 SAVSKGTDVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPDAPHEVLLVLDGTTGQNAVQ 248

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F      TGLI+TK+DGT++GG ++ I     +PV ++GVGE I+DL+ F    F 
Sbjct: 249 QAREFTRFVNVTGLIVTKLDGTSKGGIVLSISRELNLPVKYIGVGEKIDDLQLFDRASFV 308

Query: 308 AVITGCLDYGEE 319
             +    +  EE
Sbjct: 309 EALLEKENGNEE 320


>gi|189459673|ref|ZP_03008458.1| hypothetical protein BACCOP_00301 [Bacteroides coprocola DSM 17136]
 gi|189433632|gb|EDV02617.1| hypothetical protein BACCOP_00301 [Bacteroides coprocola DSM 17136]
          Length = 441

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKSFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + K++   +     +   RP VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTKLMGGDTAEI--ELKGRPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QLK+   +      C     D   +A  A ++A+
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLKVLGQQIEVPVYCELDSKDPVQIALNAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  +   +       P   L V+D+ TGQ+A+    
Sbjct: 180 AKGYDLVIVDTAGRLAVDEQMMNEIEAIKNAIN------PDETLFVVDSMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRTVVNKPIKFVGTGEKLDAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|254446931|ref|ZP_05060398.1| signal recognition particle protein [gamma proteobacterium
           HTCC5015]
 gi|198263070|gb|EDY87348.1| signal recognition particle protein [gamma proteobacterium
           HTCC5015]
          Length = 461

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 157/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + ++    RL +D +++ L D    L+ +D+ + V +  V  +  +   
Sbjct: 2   FDNLSGRLGQVVKNMTGQGRLTEDNIKDALRDVRMALLEADVALPVVKDFVARVKERAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q  +  V++ +  ++   ++  +   +  P  +L+ G+ G GKTT +GKL
Sbjct: 62  VEVIESVKPGQAFIKVVNDELVTLMGEANESLDL-AAKPPATVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KVM+ + D +R AAIDQL+  A++    F  S       A+A  A  +A+
Sbjct: 121 AKHLKEREKKKVMVVSCDVYRPAAIDQLQTLAEQVDVAFFPSTTEQKPEAIAQAALAEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVL+IDTAGRLH ++ +M  I  +   ++      P   L V+DA TGQ+A    +
Sbjct: 181 KQFIDVLLIDTAGRLHIDADMMGEIQSLHSAVE------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ F+G+GE I  L+PF     ++ I
Sbjct: 235 AFNDALPLTGVILTKADGDARGGAALSVRQITGKPIKFIGMGEKIQALDPFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|229031477|ref|ZP_04187477.1| Cell division protein ftsY [Bacillus cereus AH1271]
 gi|228729766|gb|EEL80746.1| Cell division protein ftsY [Bacillus cereus AH1271]
          Length = 329

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 187/310 (60%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV+
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVS 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   + +  V       I+K     S   N        V+L V
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSEFSNEINMQEDQ-LTVVLFV 126

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 127 GVNGVGKTTTIGKLAHKFKTEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 187 PAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVI 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 247 DATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDD 306

Query: 298 LEPFVAKDFS 307
           L+ F  + + 
Sbjct: 307 LQQFDPEQYV 316


>gi|229047534|ref|ZP_04193124.1| Cell division protein ftsY [Bacillus cereus AH676]
 gi|228723781|gb|EEL75136.1| Cell division protein ftsY [Bacillus cereus AH676]
          Length = 329

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 121/310 (39%), Positives = 187/310 (60%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GVA
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVA 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   + +  V       I+K     S   N        V+L V
Sbjct: 68  TVMELIDQLKEEVQRRNIQNPKEVQAVISEKLVGIYKGDSDFSNEINMQEDQ-LTVVLFV 126

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 127 GVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 187 PAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVI 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 247 DATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDD 306

Query: 298 LEPFVAKDFS 307
           L+ F  + + 
Sbjct: 307 LQQFDPEQYV 316


>gi|225848693|ref|YP_002728856.1| signal recognition particle-docking protein FtsY
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644095|gb|ACN99145.1| signal recognition particle-docking protein FtsY
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 304

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 116/302 (38%), Positives = 185/302 (61%), Gaps = 2/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            S+  K+  G   T  +L EG   I   R++D+ + EE+E +L+++D+GV+   +I++ L
Sbjct: 3   KSFFEKIKTGLEKTKKQLIEGFNKISFGRKIDESLFEEIETVLLKADVGVSATTEIIDFL 62

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   + ++    L ++  E ++ +L             +P VIL +GVNG GKTT +G
Sbjct: 63  RKESKKRGITEGEQLKELLKEKLYDILKDCQSSLKL-LGEKPDVILFLGVNGSGKTTTVG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+  + + G  V+LAA DTFR+AAIDQL++WA+R     V  + G+D +A+ ++A   A
Sbjct: 122 KLAWMLKNEGKSVVLAAADTFRAAAIDQLEVWANRVGVRIVKHQPGADPSAVVFDAINSA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           ++K  D++I+DTAGRLH    LM  + K+ R +++  P+ P   L VLD T GQN++ Q 
Sbjct: 182 KSKGDDIVIVDTAGRLHTKEHLMKELQKIKRTIQKFSPNQPVETLLVLDGTLGQNSINQA 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F      +G+++TK+DGTA+GG +IPI    KIPV F+GVGEG+ DL+PF AK F   
Sbjct: 242 KVFKEATDVSGIVITKLDGTAKGGAIIPICRDLKIPVKFIGVGEGLEDLQPFDAKMFVYA 301

Query: 310 IT 311
           + 
Sbjct: 302 LF 303


>gi|1237016|dbj|BAA10978.1| Srb [Bacillus subtilis]
 gi|1237019|dbj|BAA08616.1| Srb [Bacillus subtilis]
          Length = 329

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 121/309 (39%), Positives = 184/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+  ++ S   K   G   T    +  + D++S  R++D+   EELE++LI +D+G  
Sbjct: 8   KEKITKQTDSVSEKFKDGLEKTRNSFQNKVNDLVSRYRKVDEDFFEELEEVLISADVGFT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
              ++++EL  +   +++   + +  V SE + ++     +  +       R +VIL+VG
Sbjct: 68  TVMELIDELKKEVKRRNIQDPKEVQSVISEKLVEIYNSGDEQISELNIQDGRLNVILLVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ KM   G  V+LAAGDTFR+ AI+QL++W +RT    +    GSD 
Sbjct: 128 VNGVGKTTTIGKLAHKMKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQTAGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+A+  DVLI DTAGRL N   LM  + K+ RV++R  P  PH VL  LD
Sbjct: 188 AAVIYDAVHAAKARNADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPETPHEVLLALD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I     IPV  +G+GE ++DL
Sbjct: 248 ATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVDDL 307

Query: 299 EPFVAKDFS 307
           + F  + + 
Sbjct: 308 QEFDPESYV 316


>gi|332667956|ref|YP_004450744.1| signal recognition particle protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336770|gb|AEE53871.1| signal recognition particle protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 450

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 142/306 (46%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S S +L+  +  +    +L +       +E+   L+ +D+   +A++  + +  K   
Sbjct: 2   LESLSERLEGALKVLKGENKLTEINVAASIKEIRRALVDADVSYKIAKEFTDRVKEKALG 61

Query: 77  KDV------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            D         Q ++  V + +  ++   +   N   + +P VIL+ G+ G GKTT  GK
Sbjct: 62  SDNVLKAVSPGQLMIKIVMDELTDLMGGQAAGLNL--AGKPTVILIAGLQGSGKTTFSGK 119

Query: 131 LSKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +     K  L  A D +R AA+DQL + A++            +   +A +A + A
Sbjct: 120 LAHWLKTQKKKSPLLVACDVYRPAAMDQLTVLAEQVGVPVYKEPESKNPVQIALKAIQYA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              K DV+I+DTAGRL  +  +MA I  +   +       P   L V+DA TGQ+A+   
Sbjct: 180 IEHKCDVVIVDTAGRLAIDEEMMAEIKNIKEAIL------PQETLFVVDAMTGQDAVNTA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F+      G+++TKMDG  RGG  + +  T   P+ F   GE ++ LE F     +  
Sbjct: 234 QVFNETINFDGVVLTKMDGDTRGGAALSVKYTVGKPIKFASTGEKMDALELFYPDRMAQR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|55821418|ref|YP_139860.1| signal recognition particle receptor (docking protein)
           [Streptococcus thermophilus LMG 18311]
 gi|55823343|ref|YP_141784.1| signal recognition particle receptor [Streptococcus thermophilus
           CNRZ1066]
 gi|55737403|gb|AAV61045.1| signal recognition particle receptor (docking protein)
           [Streptococcus thermophilus LMG 18311]
 gi|55739328|gb|AAV62969.1| signal recognition particle receptor (docking protein)
           [Streptococcus thermophilus CNRZ1066]
          Length = 463

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 117/314 (37%), Positives = 175/314 (55%), Gaps = 7/314 (2%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           + + K  +E      K  +    T       + +  ++ RR+D+   E+LE++LI SD+G
Sbjct: 150 LPDSKTETEQ----EKYNRTLKKTRTGFAARLNEFFANFRRVDEEFFEQLEEMLILSDVG 205

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           V VA ++ E+L  +   ++V     L    + +L+             +F     VIL V
Sbjct: 206 VNVATQLTEDLRYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYEEQINFQDGLTVILFV 265

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G  VML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 266 GVNGVGKTTSIGKLANKYKQEGKNVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGAEKAD 325

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  L
Sbjct: 326 PASVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLAL 385

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TGL++TK+DG+A+GG ++ I     IPV  +G GE I+D
Sbjct: 386 DASTGQNALNQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKIDD 445

Query: 298 LEPFVAKDFSAVIT 311
           +  F +++F   + 
Sbjct: 446 IGEFHSEEFMQSLL 459


>gi|257061559|ref|YP_003139447.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 8802]
 gi|256591725|gb|ACV02612.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 8802]
          Length = 499

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 182/315 (57%), Gaps = 5/315 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + + +++E ++W+++L +G   T   L   +  I+    L+     E+E LL+++D+G+ 
Sbjct: 183 TPENISAEEINWLKRLRQGLGKTRRGLVNQLKAIVGQGPLNQDAVMEIEALLLQADVGLE 242

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM----PLSKPFNWDFSHRPHVILVV 117
               I+ +L  K   + +  ++ +  + E++ ++L      +  P         ++ L+ 
Sbjct: 243 ATDYIINKLQNKLREESLPSEQAIEYLKEILREILDRPLQQVKNPGFAPEKDTLNIWLMT 302

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT IGKL+     +G   M+AA DTFR+AA++Q+K+W +RT+   + +    +
Sbjct: 303 GVNGAGKTTTIGKLAHLSQKSGYSCMIAAADTFRAAAVEQVKVWGERTNTPVIANPGKNT 362

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++    AQ+++ ++L++DTAGRL N   LM  + K+ R++ +  P A    L V
Sbjct: 363 DPAAVVFDGIAAAQSRQTELLLVDTAGRLQNKKNLMEELSKIRRIIDKKAPDAQVEALLV 422

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + I     +P+ F+G GEGI 
Sbjct: 423 LDATLGQNGLRQAEVFSESAKLSGVVLTKLDGTAKGGVALAIAQQLNLPIRFIGAGEGIE 482

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF + +F   + 
Sbjct: 483 DLRPFSSYEFVEALL 497


>gi|310778343|ref|YP_003966676.1| signal recognition particle-docking protein FtsY [Ilyobacter
           polytropus DSM 2926]
 gi|309747666|gb|ADO82328.1| signal recognition particle-docking protein FtsY [Ilyobacter
           polytropus DSM 2926]
          Length = 413

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 182/311 (58%), Gaps = 3/311 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVA 61
            + V  +   +   L +  + +       +      R  +DD + E+LE++LI+SDIG+ 
Sbjct: 103 KEIVVPKKKGFFTSLKEKLSKSREGFFGKVKGFFLGRSVIDDEMYEDLEEMLIQSDIGMD 162

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  KIV  L  +  ++ +   + +Y V  +++   L+        +     +VILVVGVN
Sbjct: 163 MTLKIVGALEKEVRSRGIKDPKEVYGVLKDVMENFLIEEENELKTE-KPGLNVILVVGVN 221

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++ K++  G KV++ AGDTFR+AAI+QL+ W  R  A+ +  + G+D  A
Sbjct: 222 GVGKTTTIGKIASKLTKEGKKVIVGAGDTFRAAAIEQLEEWTIRAGAEIIKHQQGTDPGA 281

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++  K A+ +  DV IIDTAGRLHN + LM  + K+ R++++    + +  + V+D T
Sbjct: 282 VVFDTLKAAENRNADVAIIDTAGRLHNKNNLMKELEKINRIIEKHVGDSSYESILVIDGT 341

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN L Q ++F+ V   TG I+TK+DGTA+GG +  I    K P+ F+GVGEGI DL P
Sbjct: 342 TGQNGLNQAKVFNEVTKLTGFIVTKLDGTAKGGIVFAISEELKKPIKFIGVGEGIEDLRP 401

Query: 301 FVAKDFSAVIT 311
           F  K++   I 
Sbjct: 402 FKPKEYIDAIF 412


>gi|184155712|ref|YP_001844052.1| signal recognition particle receptor [Lactobacillus fermentum IFO
           3956]
 gi|183227056|dbj|BAG27572.1| signal recognition particle receptor [Lactobacillus fermentum IFO
           3956]
          Length = 509

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 115/298 (38%), Positives = 173/298 (58%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +K  +G   +       +   +++ R +D+   ++LED+LI SD+G  +A K+ + L  +
Sbjct: 201 KKYDQGLEKSRNGFGARLNRFLANFRHVDEDFFDDLEDMLIESDVGYEMAMKLSDSLREE 260

Query: 74  RYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              ++   ++ + +V       ++       +         P VI+ VGVNG GKTT IG
Sbjct: 261 VRLQNAKNKQDVSNVIIEKMVNLYDEAGAGEQTTLTMADQGPTVIMFVGVNGAGKTTTIG 320

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++ +    G +V+LAA DTFR+ A +QL++WA R   D V     SD AA+ ++A  +A
Sbjct: 321 KMAARFKGQGKRVLLAAADTFRAGATEQLEVWAQRDGVDIVTGPENSDPAAVVFDAVTKA 380

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVL +DTAGRL N   LM  + KM R+L R  P APH VL VLDATTGQNAL Q 
Sbjct: 381 KKDNYDVLFVDTAGRLQNKVNLMNELAKMKRILTREIPDAPHEVLLVLDATTGQNALTQA 440

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           ++F      TG+++TK+DGTARGG ++ I     +PV F+G+GE ++DLE F A+DF 
Sbjct: 441 KLFKETTDVTGIVLTKLDGTARGGIVLAIRNELHLPVKFVGLGEKVSDLEEFNAQDFV 498


>gi|315924205|ref|ZP_07920431.1| signal recognition particle protein [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622607|gb|EFV02562.1| signal recognition particle protein [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 449

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S K ++    +    +LD+   +    E++  L+ +D+   V ++  + +  +   
Sbjct: 4   FEGLSEKFQDIFAGMRRKGKLDEADIKAANREIKLALLEADVNFKVVKRFTKAVSERAQG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++       Q+ +  V++ + ++L    KP     S   ++ ++VG+ G GKTT  GK+
Sbjct: 64  EEILKSLTPGQQYIKVVNDEMTRLLGGEIKPLELQKSD-LNIFMMVGLQGAGKTTTAGKI 122

Query: 132 SKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAIDQLK+  ++            +   +A +A   AQ
Sbjct: 123 ANLLRKENKLKPLLVACDVYRPAAIDQLKVLGEQLDIPVYTMPGMKEPRIIANQAISYAQ 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  +++I+DTAGRL  +  LM  +  +  ++       P   L V+D  TGQ ++   +
Sbjct: 183 KQGYNLVILDTAGRLQIDERLMRELMDIKELVH------PTETLLVVDGMTGQESVNVAK 236

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      +G+++TK+DG  RGG  + +  T   P+ F+G GE ++DLE F     ++ I
Sbjct: 237 SFDDQLDISGVVLTKLDGDTRGGAALSVTYTTGKPIVFIGSGEKLSDLERFHPDRMASRI 296

Query: 311 TGCLD 315
            G  D
Sbjct: 297 LGMGD 301


>gi|311113791|ref|YP_003985013.1| signal recognition particle protein [Rothia dentocariosa ATCC
           17931]
 gi|310945285|gb|ADP41579.1| signal recognition particle protein [Rothia dentocariosa ATCC
           17931]
          Length = 528

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 143/313 (45%), Gaps = 25/313 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLSEADIDATVREIRRALLDADVAVPVVREFAAHIKERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++  N      P +I++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPSQQIVKIVNEELITILGGQTRRINM-AKTGPTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---------GSDAAALA 182
           +K +   G   +L A D  R  A+ QLK+  +R                     D   +A
Sbjct: 121 AKWLKGQGHTPILVASDLQRPNAVTQLKVVGERAGVPVFAPHPGVTSEFDTPTGDPVQVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +   +A+AK  DV+I+DTAGRL  ++ LM     +   ++      P  VL V+DA  G
Sbjct: 181 RDGVAEARAKLHDVVIVDTAGRLGVDAELMQQARNIRDAIE------PQEVLFVIDAMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+     F+     TG++++K+DG ARGG  + +      P+ F   GE ++D E F 
Sbjct: 235 QDAVNTANAFNEGVDFTGVVLSKLDGDARGGAALSVASVTGKPIMFASTGENVDDFEQFH 294

Query: 303 AKDFSAVITGCLD 315
               ++ I    D
Sbjct: 295 PDRMASRILDMGD 307


>gi|307565825|ref|ZP_07628286.1| signal recognition particle protein [Prevotella amnii CRIS 21A-A]
 gi|307345449|gb|EFN90825.1| signal recognition particle protein [Prevotella amnii CRIS 21A-A]
          Length = 456

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKSFTDRVKAKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + +  ++    +       +RP +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKLVHDELALLMGG--EAVGMSLENRPAIILMSGLQGSGKTTFAGKL 119

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +     K  +L A D +R AAIDQLK+  ++            +   +A  A  +A+
Sbjct: 120 AKMLKTKNHKQPLLVACDVYRPAAIDQLKVVGEQVDVPVYSEAGNKNVNEIATHAIAEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +K  DV+IIDTAGRL  +  +M  I  +   +       P   L V+D+ TGQ+A+   +
Sbjct: 180 SKGNDVIIIDTAGRLAVDEDMMNEIESLKNHIT------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F++     G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F  +  +  I
Sbjct: 234 EFNSRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFIGTGEKMDAIDVFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|257876183|ref|ZP_05655836.1| signal recognition particle protein [Enterococcus casseliflavus
           EC20]
 gi|257810349|gb|EEV39169.1| signal recognition particle protein [Enterococcus casseliflavus
           EC20]
          Length = 430

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 123/307 (40%), Positives = 185/307 (60%), Gaps = 4/307 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           + A E+ S   K TKG   +     + + ++ ++ R +D+   EE+E+ LI +D+G   A
Sbjct: 114 QPAPETESVQDKYTKGLTKSRKTFGQRMNELFANFRTVDEDFFEEVEETLIGADVGFDAA 173

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMP--LSKPFNWDFSHRPHVILVVGVN 120
            KI + L  +   ++V     + +V  E +  +     + +    +      VIL VGVN
Sbjct: 174 MKIADALRQEVKLRNVKKTADVQNVIIEKLVDLYGEAGVGEVNELNMQSGLTVILFVGVN 233

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +    G KV+LAA DTFR+ AIDQL +W +R   + V    G D AA
Sbjct: 234 GVGKTTSIGKLAHQFKAEGKKVLLAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAA 293

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A ++A+ +  DVL++DTAGRL N   LM  + K+ R+++R+DP APH VL VLDAT
Sbjct: 294 VVFDAMERAKRENADVLLVDTAGRLQNKVNLMNELEKIKRIIQRVDPTAPHEVLLVLDAT 353

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q + F      +GL++TK+DGTA+GG ++ I    ++PV  +G+GEGINDLEP
Sbjct: 354 TGQNAMNQAKQFKETTDVSGLVLTKLDGTAKGGIVLAIRNELRLPVKLVGLGEGINDLEP 413

Query: 301 FVAKDFS 307
           F   +F 
Sbjct: 414 FDPNEFV 420


>gi|313205775|ref|YP_004044952.1| signal recognition particle subunit ffh/srp54 (srp54) [Riemerella
           anatipestifer DSM 15868]
 gi|312445091|gb|ADQ81446.1| signal recognition particle subunit FFH/SRP54 (srp54) [Riemerella
           anatipestifer DSM 15868]
 gi|315022827|gb|EFT35851.1| signal recognition particle protein [Riemerella anatipestifer
           RA-YM]
 gi|325336784|gb|ADZ13058.1| Ffh [Riemerella anatipestifer RA-GD]
          Length = 454

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   KL + + ++    ++ +       +E+   L+ +D+   VA+ + + +  K   
Sbjct: 2   FNSLQDKLDKALHNLSGRGKITEINVAETVKEIRRALVDADVNYKVAKDLTKRVQEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q +   V + + +++    +  N   S +P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTSLTPGQLMTKIVHDELVELMGGSQEGINL--SGKPTVILIAGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AAIDQLK+   +T       E   + + +A  A   A+
Sbjct: 120 ANYLKKKRAKNPLLVACDVYRPAAIDQLKVLGSQTGIPVYTEEENKNPSTIAENAVNFAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A K DV+I+DTAGRL  +  +M  I  +   +K      P   L V+D+ TGQ+A+   +
Sbjct: 180 ANKHDVVIVDTAGRLAIDEQMMNEIKSVHYFIK------PTETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+  GE +  L+ F  +  +  I
Sbjct: 234 AFNDALNFDGVVLTKLDGDTRGGAALTIRSVVNKPIKFISTGEKMEALDLFYPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|257866579|ref|ZP_05646232.1| signal recognition particle protein [Enterococcus casseliflavus
           EC30]
 gi|257872905|ref|ZP_05652558.1| signal recognition particle protein [Enterococcus casseliflavus
           EC10]
 gi|257800537|gb|EEV29565.1| signal recognition particle protein [Enterococcus casseliflavus
           EC30]
 gi|257807069|gb|EEV35891.1| signal recognition particle protein [Enterococcus casseliflavus
           EC10]
          Length = 429

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 123/307 (40%), Positives = 185/307 (60%), Gaps = 4/307 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           + A E+ S   K TKG   +     + + ++ ++ R +D+   EE+E+ LI +D+G   A
Sbjct: 113 QPAPETESVQDKYTKGLTKSRKTFGQRMNELFANFRTVDEDFFEEVEETLIGADVGFDAA 172

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMP--LSKPFNWDFSHRPHVILVVGVN 120
            KI + L  +   ++V     + +V  E +  +     + +    +      VIL VGVN
Sbjct: 173 MKIADALRQEVKLRNVKKTADVQNVIIEKLVDLYGEAGVGEVNELNMQSGLTVILFVGVN 232

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +    G KV+LAA DTFR+ AIDQL +W +R   + V    G D AA
Sbjct: 233 GVGKTTSIGKLAHQFKAEGKKVLLAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAA 292

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A ++A+ +  DVL++DTAGRL N   LM  + K+ R+++R+DP APH VL VLDAT
Sbjct: 293 VVFDAMERAKRENADVLLVDTAGRLQNKVNLMNELEKIKRIIQRVDPTAPHEVLLVLDAT 352

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q + F      +GL++TK+DGTA+GG ++ I    ++PV  +G+GEGINDLEP
Sbjct: 353 TGQNAMNQAKQFKETTDVSGLVLTKLDGTAKGGIVLAIRNELRLPVKLVGLGEGINDLEP 412

Query: 301 FVAKDFS 307
           F   +F 
Sbjct: 413 FDPNEFV 419


>gi|229098316|ref|ZP_04229263.1| Cell division protein ftsY [Bacillus cereus Rock3-29]
 gi|229104409|ref|ZP_04235078.1| Cell division protein ftsY [Bacillus cereus Rock3-28]
 gi|229117333|ref|ZP_04246711.1| Cell division protein ftsY [Bacillus cereus Rock1-3]
 gi|228666233|gb|EEL21697.1| Cell division protein ftsY [Bacillus cereus Rock1-3]
 gi|228679107|gb|EEL33315.1| Cell division protein ftsY [Bacillus cereus Rock3-28]
 gi|228685214|gb|EEL39145.1| Cell division protein ftsY [Bacillus cereus Rock3-29]
          Length = 332

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 119/310 (38%), Positives = 186/310 (60%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K   G   T     + + D++   R++D+   EELE++LI +D+GV+
Sbjct: 11  KEKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVS 70

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   + +  V       I+K     S   N        V+L V
Sbjct: 71  TVMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSDFSNEINMQEDQ-LTVVLFV 129

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 130 GVNGVGKTTTIGKLAHRFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 189

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 190 PAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVI 249

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 250 DATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDD 309

Query: 298 LEPFVAKDFS 307
           L+ F  + + 
Sbjct: 310 LQQFDPEQYV 319


>gi|115442343|ref|NP_001045451.1| Os01g0958100 [Oryza sativa Japonica Group]
 gi|113534982|dbj|BAF07365.1| Os01g0958100 [Oryza sativa Japonica Group]
          Length = 347

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 186/311 (59%), Gaps = 6/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL--DDGVREELEDLLIRSDIGVAVA 63
           +  ++ S + KL  GF+ T   L   + ++++   L   D V +ELE+ L+ SD G  ++
Sbjct: 37  IQEKAKSDVEKLFSGFSKTRESLS-VVDELLTYWNLADTDRVLDELEEALLVSDFGPKIS 95

Query: 64  QKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
            +IV+ L  + R  K  S   +   +   I ++L              +P VI++VGVNG
Sbjct: 96  FRIVDTLREEIRDGKLKSGAEIKEALKRCILELLTSKGGNPELQLGFRKPAVIMIVGVNG 155

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAA 180
            GKTT +GKL+ +  + G+KV++AAGDTFR+AA DQL++WA+RT ++ V   +  +  A+
Sbjct: 156 GGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAKPAS 215

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A K+ + +  D+++ DT+GRLH N  LM  +    +V+ +  P AP+ +L VLD T
Sbjct: 216 VLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGT 275

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L+Q   F+ V G TG ++TK+DGTARGG ++ +V    IPV F+GVGEG+ DL+P
Sbjct: 276 TGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQP 335

Query: 301 FVAKDFSAVIT 311
           F A+ F   I 
Sbjct: 336 FDAEAFVEAIF 346


>gi|237746900|ref|ZP_04577380.1| signal recognition particle [Oxalobacter formigenes HOxBLS]
 gi|229378251|gb|EEO28342.1| signal recognition particle [Oxalobacter formigenes HOxBLS]
          Length = 455

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L + +  I    RL +     +  E+   L+ +D+ + V +  + ++  K   
Sbjct: 2   LDNLTQRLAKVVKTIRGEARLTEANTAEMLREVRLALLEADVALPVVKNFIGKVREKALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           K+V       Q ++  V + +  ++       +   +     P VIL+ G+ GVGKTT +
Sbjct: 62  KEVMDSLSPGQALVGVVQQELANIMGADLGEKSSRLNFATQPPAVILMAGLQGVGKTTTV 121

Query: 129 GKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL++ +      KV+  + D +R AAI QL+  + ++ ADF   +I     A+A  A  
Sbjct: 122 GKLARYLRQEKKKKVLTVSTDVYRPAAIKQLETVSGQSGADFFQPDISEQPVAIARAALD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRL  +  +M  I  + + L       P   L V+DA  GQ+A+ 
Sbjct: 182 HARRHFYDVLIVDTAGRLGIDEQMMQEISGLHQALS------PIETLFVVDAMLGQDAIN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F+     TG+++TK+DG ARGG  + +      PV F+GV E ++ LE F     +
Sbjct: 236 VARSFNEALPLTGIVLTKLDGDARGGAALSVRHITGKPVKFVGVSEKLDGLEEFDPVRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|312898600|ref|ZP_07757990.1| signal recognition particle-docking protein FtsY [Megasphaera
           micronuciformis F0359]
 gi|310620519|gb|EFQ04089.1| signal recognition particle-docking protein FtsY [Megasphaera
           micronuciformis F0359]
          Length = 315

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 119/303 (39%), Positives = 181/303 (59%), Gaps = 4/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL      T   L  GI  + +    +DD + ++LE +++  DIG+     ++E+
Sbjct: 1   MGFFSKLKDSLEKTKKSLFTGIETVVLGYANIDDEMYDDLEAVMLTGDIGIETTDYLLEQ 60

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +     +K++     +   + +++ K+L    +P       +  VI +VGVNGVGKTT I
Sbjct: 61  IREGVKSKEIKDGSDVVPYLEKVVVKLLEENDEPEQDMEGTK--VIFIVGVNGVGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K  ++ G  VM+AAGDTFR+AA DQL IWA R     +    G+DAAA+ Y+A   
Sbjct: 119 GKLAKYYTEHGKSVMIAAGDTFRAAASDQLTIWAQRVGVPIIKHREGADAAAVVYDATAS 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+  D+L++DTAGRLH  + LM  + KM RV  +    APH  L VLDATTGQNA+ Q
Sbjct: 179 AKARHADILLVDTAGRLHTKNNLMEELRKMARVAAKNVEGAPHETLLVLDATTGQNAVSQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F  V   TG+++TK+DGTA+GG ++ I     +PV ++GVGEG +DL+PF A  F+ 
Sbjct: 239 AKLFGEVVPLTGVVLTKLDGTAKGGIVLSIKRILGVPVRWVGVGEGADDLQPFDAAQFAD 298

Query: 309 VIT 311
            + 
Sbjct: 299 ALF 301


>gi|78186827|ref|YP_374870.1| Signal recognition particle protein [Chlorobium luteolum DSM 273]
 gi|78166729|gb|ABB23827.1| signal recognition particle subunit FFH/SRP54 (srp54) [Chlorobium
           luteolum DSM 273]
          Length = 449

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S  L+     +     +++        +++  L+ +D+   V +K+VE++  K   
Sbjct: 2   FESLSDTLEGAFRKLAGQATINEINIGIAMRDIKRALLGADVNYKVVKKLVEDIRLKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  VS+ + +++    KP N    + P V++V G+ G GKTT   KL
Sbjct: 62  EDVVKSVSPAQMIVKIVSDELTELMGGEQKPLNLSTKNLPAVVMVAGLQGSGKTTFCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K++   G   M+ A D +R AA++QLK             +   DA  +A E  + A+ 
Sbjct: 122 AKRLKKGGKNPMMVAADVYRPAAVEQLKTLGLEVGVPVFSLDE-QDAMKVAREGLEAARR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLI+DTAGRL  +  +MA    +  ++K      P  +L V+D+  GQ A+   + 
Sbjct: 181 GAHDVLILDTAGRLQIDDRMMAEAEALKNLMK------PEELLFVVDSMMGQEAVNTAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG +RGG  + I    + P+ F+ VGE ++DL+ F     +  I 
Sbjct: 235 FNDRLDFDGVVLTKLDGDSRGGAALSIRQVVEKPIKFMSVGEKMDDLDQFYPDRMAQRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|325297211|ref|YP_004257128.1| signal recognition particle protein [Bacteroides salanitronis DSM
           18170]
 gi|324316764|gb|ADY34655.1| signal recognition particle protein [Bacteroides salanitronis DSM
           18170]
          Length = 441

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKNFTDTVKEKAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + K++   +     D   RP VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELAKLMGGDT--IELDLKGRPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++        K +L A D +R AAI+QLK+   +            D   +A  A ++A+
Sbjct: 120 ARMFKTKKNRKPLLVACDVYRPAAIEQLKVLGTQVEVPVYSEPESKDPVQIAKNAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  +   +       P + L V+DA TGQ+A+    
Sbjct: 180 AKGYDLVIVDTAGRLAVDEQMMNEIETIKNAIT------PDATLFVVDAMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFTGVVLTKLDGDTRGGAALSIRTVVNKPILFVGTGEKLDAVDLFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|296117621|ref|ZP_06836205.1| signal recognition particle protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969352|gb|EFG82593.1| signal recognition particle protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 541

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 146/319 (45%), Gaps = 30/319 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+  +  +    +L +        E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FESLSDRLQTTLKGLRGKGKLTEADINATAREIRLALLEADVSLTVVRGFIKRVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPAQQVIKIVNEELVTILGGETRRLQF-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           +K +S  G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 AKHLSGQGHTPMLVACDLQRPGAVQQLEIVGERAGVPTFAPDAGTSVDAHDHEMGTSTGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A+  + DV+IIDTAGRL  +  LM     +       D   P  VL V+
Sbjct: 181 PVQVAQAGIEEAKRAQHDVVIIDTAGRLGIDETLMTQARNI------RDAVNPDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+A+   E F      TG+++TK+DG ARGG  + I      P+ F   GE + +
Sbjct: 235 DSMIGQDAVTTAEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPIMFASTGEKLEN 294

Query: 298 LEPFVAKDFSAVITGCLDY 316
            + F  +  ++ I G  D 
Sbjct: 295 FDVFHPERMASRILGMGDM 313


>gi|238899329|ref|YP_002925012.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229467090|gb|ACQ68864.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 453

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ ++V +  ++ +  K   
Sbjct: 2   FNNLTERLSRTLRNISGRGRLTEENIKTSLREVRVALLDADVALSVVRDFIQRVKKKAMG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +++      Q  +  V   +   +   +   N   +  P VIL+ G+ G GKTT + KL
Sbjct: 62  HEINKSLTPGQEFIKIVKNEMTSAMGEFNTELNL-ATQPPAVILMAGLQGAGKTTSVVKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +      KV+L + D +R AAI QL+  A   S +F  S    +   +  +A K A+
Sbjct: 121 GKFITEKQKKKVLLVSVDVYRPAAIKQLETLAQSVSIEFFPSHFEENPVDIVTQALKHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   L       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDENMMNEIKQLHLSLD------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V   TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF  +  ++ I
Sbjct: 235 AFNEVLPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFYPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|289704592|ref|ZP_06501025.1| signal recognition particle protein [Micrococcus luteus SK58]
 gi|289558712|gb|EFD51970.1| signal recognition particle protein [Micrococcus luteus SK58]
          Length = 528

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 142/313 (45%), Gaps = 25/313 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +    RL +   +    E+   L+ +D+ V V ++ + ++  +   
Sbjct: 2   FNSLSDRLTATFRSLKGKGRLSEADIDATAREIRRALLDADVAVPVVRQFIAQIKERALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V+E +  +L   ++      +    VI++VG+ G GKTT+ GKL
Sbjct: 62  AEVAQALNPGQQVVKIVNEELVGILGGETRRIQHAKTGT-TVIMLVGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---------GSDAAALA 182
           +  +   G   +L A D  R  A+ QL++  +R                     D   +A
Sbjct: 121 AHLLKSQGHTPLLVACDLQRPNAVKQLQVGGERAGVPVYAPHPGVSSEFEAATGDPVQVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +   +A  K  DV+IIDTAGRL  ++ LM     +   +       P  VL V+DA  G
Sbjct: 181 RDGVAEANTKYHDVVIIDTAGRLGVDAELMQQAADIRAAVD------PDEVLFVIDAMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+   + F+   G TG+++TK+DG ARGG  + +      P+ F   GEG+ D E F 
Sbjct: 235 QDAVATAQAFNEGVGFTGVVLTKLDGDARGGAALSVRHVTGKPIMFASTGEGLKDFEVFH 294

Query: 303 AKDFSAVITGCLD 315
               ++ I    D
Sbjct: 295 PDRMASRILDMGD 307


>gi|255070283|ref|XP_002507223.1| type II secretory pathway family [Micromonas sp. RCC299]
 gi|226522498|gb|ACO68481.1| type II secretory pathway family [Micromonas sp. RCC299]
          Length = 568

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/308 (28%), Positives = 143/308 (46%), Gaps = 17/308 (5%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F S + +L      +     L      G  +++   L+ +D+ + V ++ ++ +  K 
Sbjct: 83  SAFGSLTERLNSVWATLKDEDDLSLENIKGPLKDIRRALLEADVSLPVVRRFIKNIEQKA 142

Query: 75  YAKDVSV-----QRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTV 127
               V+      Q++   V++ + +++           D S  P VIL+ G+ GVGKTT 
Sbjct: 143 IGTRVTKGVNAGQQLTKVVADELCELMGGFGGDSLAFKDPSMGPTVILMAGLQGVGKTTA 202

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+  +   G   +L A D +R AAI+QLK   ++         +  D   +A    +
Sbjct: 203 CGKLALYLKKQGKDSLLVATDVYRPAAIEQLKRLGEQVKTPVFDMGVRVDPPEVARLGLE 262

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+A+ +DV+IIDTAGRL  +  LM  +             A   +L V+DA TGQ A  
Sbjct: 263 KARAEGIDVVIIDTAGRLQVDVHLMEELRATK------IATAADEILLVVDAMTGQEAAA 316

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F    G TG ++TKMDG  RGG  + +      P+ F GVGE +  LEPF  +  +
Sbjct: 317 LTAAFDEAVGITGAVLTKMDGDTRGGAALSVREVSGKPIKFTGVGEKMEALEPFYPERMA 376

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 377 SRILGMGD 384


>gi|257094573|ref|YP_003168214.1| signal recognition particle protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047097|gb|ACV36285.1| signal recognition particle protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 451

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +        E+   L+ +D+ +   ++++  +  K   
Sbjct: 2   LDNLTQRLARVMKTLRGEARLTEANIADSLREVRLALLEADVALPAIKELIAAVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V   + +++       N   +  P +IL+ G+ G GKTT +GKL
Sbjct: 62  EEVIGSLSPGQALIGVVHRELTRLMGEAHSGLNL-ATQPPAIILMAGLQGSGKTTTVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KV++ + D +R AAI+QLK  A +  ADF  S        +A  A   A+
Sbjct: 121 AKMLRETQKKKVLVVSCDIYRPAAIEQLKTVAGQAGADFFPSTPTDKPVDIARNAVDWAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +M  I ++   +K      P   L V+DA  GQ+A+    
Sbjct: 181 RHYHDVLLVDTAGRLAIDEAMMREIAELHTAIK------PIETLFVVDAMQGQDAITTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ + G+GE +  LE F  +  ++ I
Sbjct: 235 AFSETLPLTGVILTKLDGDARGGAALSVRHVTGRPIKYAGIGEKLTGLEAFHPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|30021935|ref|NP_833566.1| cell division protein ftsY [Bacillus cereus ATCC 14579]
 gi|229129123|ref|ZP_04258096.1| Cell division protein ftsY [Bacillus cereus BDRD-Cer4]
 gi|29897491|gb|AAP10767.1| Cell division protein ftsY [Bacillus cereus ATCC 14579]
 gi|228654360|gb|EEL10225.1| Cell division protein ftsY [Bacillus cereus BDRD-Cer4]
          Length = 329

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 121/310 (39%), Positives = 187/310 (60%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GVA
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVA 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   + +  V       I+K     S   N        V+L V
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSDFSNEINMQEDQ-LTVVLFV 126

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 127 GVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 187 PAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVI 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 247 DATTGQNGLSQAKTFRETTNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDD 306

Query: 298 LEPFVAKDFS 307
           L+ F  + + 
Sbjct: 307 LQQFDPEQYV 316


>gi|15895029|ref|NP_348378.1| Signal recognition particle GTPase, FtsY [Clostridium
           acetobutylicum ATCC 824]
 gi|15024721|gb|AAK79718.1|AE007684_6 Signal recognition particle GTPase, FtsY [Clostridium
           acetobutylicum ATCC 824]
          Length = 303

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 131/302 (43%), Positives = 188/302 (62%), Gaps = 4/302 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           ++  KL  G + T   L   I+D+++S   +DD + +ELE++LI SDIGV  +  I+++L
Sbjct: 4   NFFDKLKNGLSKTKNNLTSKISDVLTSTVTIDDDLYDELEEILITSDIGVETSLYIIDKL 63

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K     V    ++ D + E+I  +L    K  +      P  ILVVGVNGVGKTT IG
Sbjct: 64  KEKIKENKVKDPSLVNDCLKEVIKDILGD--KKGSLMPKQIPETILVVGVNGVGKTTSIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+S ++    LKV++AA DTFR+AAIDQL++W+ R + D +  + GSD AA+ ++A + A
Sbjct: 122 KISSRLKSQNLKVIMAAADTFRAAAIDQLEVWSKRANVDIIKHQEGSDPAAVVFDAIEAA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI DTAGRLHN   LM  + K+ R++ R    +    L VLDATTGQNA+ Q 
Sbjct: 182 KARKADVLICDTAGRLHNKKNLMNELEKINRIIDREFSQSTRRTLLVLDATTGQNAVIQA 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  V    G+++TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F   DF   
Sbjct: 242 KQFMEVCKVDGIVLTKLDGTAKGGIVIFIKHQLDIPVEFVGVGEGIDDLQEFNPSDFVEA 301

Query: 310 IT 311
           + 
Sbjct: 302 LF 303


>gi|325294335|ref|YP_004280849.1| signal recognition particle protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064783|gb|ADY72790.1| signal recognition particle protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 448

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 151/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + K++  I  I    R+D+   E    E++  L+ +D+   V    ++++  K   
Sbjct: 2   FDALAEKVQSAIEKIGRKGRIDEETLEKGLREIKLALLEADVNYRVVSNFIKDIKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+++  V + + + L   ++  N     +P VIL++G+ G GKTT   KL
Sbjct: 62  AKVIKGVNPAQQLVKIVHDELVQTLGGEAEKLNLK--GKPSVILLIGLQGSGKTTTAAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G +V+L + D +R AA+ QLK   D+        E   DA  +A +A  +A+ 
Sbjct: 120 ANYLKKQGKRVLLTSVDVYRPAAMLQLKKLGDQIGIPVFLEEKEKDAVKIAKDALLKAKD 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVL++DTAGRLH +  L+    K+   +       P   L V+D+ TGQ ++   + 
Sbjct: 180 ESYDVLVVDTAGRLHIDEELLEEARKIKEEV------VPDETLFVIDSMTGQESVNIAKA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TG+++TKMD  ARGG  + +      P+ F GVGE I+D EPF     ++ I 
Sbjct: 234 FDERVGMTGIVLTKMDSDARGGVALSVKGVTGKPIKFAGVGEKIDDFEPFYPDRVASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|290957104|ref|YP_003488286.1| signal recognition particle protein [Streptomyces scabiei 87.22]
 gi|260646630|emb|CBG69727.1| signal recognition particle protein [Streptomyces scabiei 87.22]
          Length = 516

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 149/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FDTLSDRLSATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIKNVKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DVS      Q+VL  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  SDVSKALNPAQQVLKIVNEELVGILGGETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              + + G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 121 GHWLKEQGHSPLLVACDLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A++K  D++++DTAGRL  +  +M     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 AKSKVHDIVVVDTAGRLGIDQEMMQQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I      P+ F   GE +++ + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIASVTGKPIMFASNGEKLDEFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|229822806|ref|ZP_04448876.1| hypothetical protein GCWU000282_00095 [Catonella morbi ATCC 51271]
 gi|229787619|gb|EEP23733.1| hypothetical protein GCWU000282_00095 [Catonella morbi ATCC 51271]
          Length = 340

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/299 (37%), Positives = 172/299 (57%), Gaps = 8/299 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I    +G A T     + +T++ +S R +D+   E+LE+  I +D+G A+   I + +  
Sbjct: 31  IDSYDQGTAKTRRNFTDIMTNLFTSFREVDEEFYEDLEEAFIGADVGFAMTIAITDAIRD 90

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-----PHVILVVGVNGVGKTTV 127
           +     V     +  V  L+ KM+    +      S +     P VIL VGVNGVGKTT 
Sbjct: 91  EIERTGVHKPEDVKRV--LLEKMVQVYERGGQNLVSLKENPDGPTVILFVGVNGVGKTTS 148

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +GK+  ++   G KV++AA DTFR+ A++QL +W +R     V  +   D AA+ Y+A K
Sbjct: 149 VGKIGYQLKQEGHKVLMAAADTFRAGAVEQLNVWGERLDIPVVTGKAQGDPAAVVYDAVK 208

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A A+  D L++DTAGRL   + LM  + K+ R+++R +P+    VL  LDATTGQNAL 
Sbjct: 209 KANAEGYDYLLVDTAGRLQTKANLMEELAKIKRIIERENPNGVQEVLLALDATTGQNALI 268

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           Q + F+     TGL++TK+DGTA+GG ++ I     IPV ++G+GE   DL+ F A+ +
Sbjct: 269 QAKQFNEATEITGLVLTKLDGTAKGGVVLSIRYELDIPVKYIGLGEKATDLKKFDAEAY 327


>gi|315607956|ref|ZP_07882949.1| signal recognition particle protein [Prevotella buccae ATCC 33574]
 gi|315250425|gb|EFU30421.1| signal recognition particle protein [Prevotella buccae ATCC 33574]
          Length = 447

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+     +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETMKDVRRALLDADVNFKVAKNFTNTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++     P      +RP +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKLVHDELAELMGGEDAPLVLK--NRPAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AAIDQLK+  ++            D  A+A  A K+A+
Sbjct: 120 ANMLKTKEHKNPLLVACDVYRPAAIDQLKVVGEQVGVPVYAEPDNKDVIAIAANALKEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+IIDTAGRL  +  +M  I  + + +       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKNYDVVIIDTAGRLAVDEQMMTEISNLKQAVN------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFIGTGEKMEAIDVFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|320106880|ref|YP_004182470.1| signal recognition particle protein [Terriglobus saanensis SP1PR4]
 gi|319925401|gb|ADV82476.1| signal recognition particle protein [Terriglobus saanensis SP1PR4]
          Length = 460

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/322 (30%), Positives = 154/322 (47%), Gaps = 28/322 (8%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL+    ++     + ++ + E   E+   L+ SD+ + V   ++E +  K   
Sbjct: 2   FENLQEKLQRAFKNLRGQGTITEENITEALVEIRLALLESDVNLNVVGTLIEHVREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       ++V+  V + + ++L   +  F +  S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TQVATALSPTEQVIKIVHDELVEILGRDTARFKF-ASQPPTVILMAGLQGSGKTTTSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA------AALAYEA 185
           +  +   G + ML + D +R AA  QL+I A   SA     ++  +         LA EA
Sbjct: 121 AAWLKKGGHRPMLVSVDVYRPAARQQLEIVAKSISAQIYLGDLKGEPAGTPLVERLAREA 180

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++A     DVLI+DTAGRL  +  LM  +  + ++L       P  +L V DA TGQ+A
Sbjct: 181 KREAANFGCDVLIVDTAGRLGIDQPLMDEMASLKKLLN------PSEILFVADAMTGQDA 234

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +   + FH   G TG+++TKMDG ARGG  + I      PV F+G GE  +  E F    
Sbjct: 235 VNSADAFHKQLGITGVVLTKMDGDARGGAALSIRNVTGAPVKFIGTGEKPDAFEAFHPDR 294

Query: 306 FSAVITGCLD------YGEEKI 321
             + I G  D        EEK+
Sbjct: 295 IVSRIMGMGDVATLLERAEEKL 316


>gi|296133550|ref|YP_003640797.1| signal recognition particle protein [Thermincola sp. JR]
 gi|296032128|gb|ADG82896.1| signal recognition particle protein [Thermincola potens JR]
          Length = 450

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 157/305 (51%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIIS-----SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F S + +L+     +        + +D+ +RE +   L+ +D+   V +  V+++  +  
Sbjct: 3   FESLAERLQNTFKKLKGKGKLDEKDVDEAMRE-VRVALLEADVNYKVVKDFVKKVKERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V++ + +++           S  P V+++VG+ G GKTT +GK
Sbjct: 62  GAEVLGSLTPGQQVIKIVNDELTELMGGTQSKITVS-SKPPTVVMLVGLQGAGKTTTVGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L  ++   G + +L A D +R AAI QLK+  ++ +         ++   +A  A + A+
Sbjct: 121 LGNQLRKQGRRPLLVAADVYRPAAIKQLKVLGEQLNIPVFSLGDKTNPVDIAKAAVEHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   D+++IDTAGRLH N  LM  +  +   +K      PH +L V+DATTGQ+A+   +
Sbjct: 181 SYGNDMVLIDTAGRLHINEELMEELKNIKESVK------PHEILFVMDATTGQDAVNVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I+TK+DG  RGG  + +      P+ F+G+GE ++ LEPF     ++ I
Sbjct: 235 TFDEQLGIDGVIITKLDGDTRGGAALSVKAVTGKPIKFVGMGEKLDALEPFFPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|294783942|ref|ZP_06749264.1| signal recognition particle protein [Fusobacterium sp. 1_1_41FAA]
 gi|294479754|gb|EFG27533.1| signal recognition particle protein [Fusobacterium sp. 1_1_41FAA]
          Length = 444

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + ++    I    +L D        E++  L+ +D+   V +     +  K   
Sbjct: 2   LENLGNRFQDIFKKIRGHGKLSDSNIKDALREVKMSLLEADVNYKVVKDFTNRISEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V++ + ++L   S        + P +I++ G+ G GKTT   KL
Sbjct: 62  TEVIRGVNPAQQFIKLVNDELVELLGGTSSKLTKGLRN-PTIIMLAGLQGAGKTTFAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K++L   D +R AAI QL++   +   D    E   D   +A  A ++A+ 
Sbjct: 121 AKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVDVYSEEDNKDVVGIATRAIEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +I+DTAGRLH +  LM  + ++ R +K      P  +L V+DA  GQ+A+   E 
Sbjct: 181 INATYMIVDTAGRLHVDETLMNELKELKRAIK------PQEILLVVDAMIGQDAVNLAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+I+TK+DG  RGG  + I      P+ F+GVGE +ND+E F      + I 
Sbjct: 235 FNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKFIGVGEKLNDIEIFHPDRLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|253681736|ref|ZP_04862533.1| signal recognition particle protein [Clostridium botulinum D str.
           1873]
 gi|253561448|gb|EES90900.1| signal recognition particle protein [Clostridium botulinum D str.
           1873]
          Length = 451

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 154/305 (50%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL++ +  +    +L +  ++E + +    L+ +D+   + +  V+    K  
Sbjct: 2   AFEGLAEKLQDTLKKLRGKGKLSEKDIKEAMREVKLALLEADVNYKIVRNFVKTTGEKCL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V++ + +++        +  S    VI++VG+ G GKTT+ GK
Sbjct: 62  GEEVMKSLTPGQQVVKIVNDELKELMGSTESKIEFS-STGLTVIMLVGLQGAGKTTMAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++     K +L A D +R AAI QL++   +            +   +A  + + A+
Sbjct: 121 LALQLRKNNKKPLLVACDIYRPAAIKQLQVVGSQIDIPVFSMGDKVNPVDIAKASIEHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K +V+IIDTAGRLH +  LM  +  +   +K      P+ +L V+D+ TGQ+A+   E
Sbjct: 181 NNKNNVVIIDTAGRLHIDEALMDELENIKTSVK------PNEILLVVDSMTGQDAVNVSE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG  RGG  + I      P+ ++G+GE +NDLE F     ++ I
Sbjct: 235 TFNDKLDISGVILTKLDGDTRGGAALSIKAVTGKPIKYVGLGEKMNDLEVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|228992575|ref|ZP_04152502.1| Cell division protein ftsY [Bacillus pseudomycoides DSM 12442]
 gi|228767209|gb|EEM15845.1| Cell division protein ftsY [Bacillus pseudomycoides DSM 12442]
          Length = 329

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 124/322 (38%), Positives = 191/322 (59%), Gaps = 6/322 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GVA
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVA 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   R +  V       I+K     S   N        VIL V
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPREVQAVISEKLVGIYKGEEDFSNELNIQQDQ-LTVILFV 126

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 127 GVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVD+L+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 187 PAAVMYDAVQAAKARKVDILLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVI 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 247 DATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDD 306

Query: 298 LEPFVAKDFSAVITGCLDYGEE 319
           L+ F  + +   +   L   EE
Sbjct: 307 LQQFDPEQYVYGLFANLVEKEE 328


>gi|124026411|ref|YP_001015526.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. NATL1A]
 gi|123961479|gb|ABM76262.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. NATL1A]
          Length = 487

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + + ++ +       ++ +   +E    +   L+ +D+ ++V ++ ++E+  K   
Sbjct: 2   FDALTNQFEDAVKAFKGEAKISEENVDEALKQVRRALLDADVSLSVVKEFIDEVRVKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V E +  ++   + P   +   +P VIL+ G+ G GKTT   KL
Sbjct: 62  TEVVRGIDPGQKFIQVVHEELVNVMGGENDPL-ANSEEQPTVILMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + +   K +L A DT+R AAIDQL     +   +            +A +  ++A+ 
Sbjct: 121 GLLLKEKNKKPLLVAADTYRPAAIDQLVTLGKQIDVEVFNLSSNLKPEEIAKKGLEKAKK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D +++DTAGRL  ++ +M  + ++   ++      P  VL V+D+  GQ A      
Sbjct: 181 EGFDTVLVDTAGRLQIDTDMMGEMVRIKEAVQ------PDEVLLVVDSMIGQEAADITRS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHEKVGITGAVLTKLDGDSRGGAALSIRKISGKPIKFIGTGEKVEALQPFYPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|197117354|ref|YP_002137781.1| signal recognition particle GTPase FtsY [Geobacter bemidjiensis
           Bem]
 gi|197086714|gb|ACH37985.1| signal recognition particle GTPase FtsY [Geobacter bemidjiensis
           Bem]
          Length = 409

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 120/304 (39%), Positives = 180/304 (59%), Gaps = 3/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
             S+  +L K  + T   +   +  ++   +++D    EELE++LI +D+GV     ++ 
Sbjct: 106 KPSFFERLKKSLSKTHESIVGRVDTLLLGKKQIDTDTLEELEEILITADLGVKTTVDLIR 165

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +    ++     L   + E I   LM  + P       +P VILV+GVNGVGKTT 
Sbjct: 166 TLEQRLKRDELQDGEALKKALKEEIQLRLMAHAAPLVV-TDKKPFVILVIGVNGVGKTTT 224

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ + +  G KV+LAA DTFR+AA +QL++W+ R  AD V  + G+D +A+ ++A K
Sbjct: 225 IGKLAARYAGEGKKVLLAAADTFRAAAAEQLELWSQRVGADIVRHKEGADPSAVVFDACK 284

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A+  DVLIIDTAGR+H    LM  + K+ RVL R  P APH  L VLDA TGQNAL 
Sbjct: 285 AAVARGTDVLIIDTAGRMHTKVNLMEEMKKIRRVLTREIPDAPHETLLVLDAATGQNALS 344

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q ++F   A  +G+++TK+DG+A+GG ++ +   + +PV F+GVGE ++DL  F    F 
Sbjct: 345 QAKLFKEAAFVSGVVLTKLDGSAKGGVVVAVSNEYALPVRFIGVGESVDDLREFDPAQFV 404

Query: 308 AVIT 311
             + 
Sbjct: 405 EALF 408


>gi|293400506|ref|ZP_06644651.1| signal recognition particle protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305532|gb|EFE46776.1| signal recognition particle protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 467

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 142/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L +   +I    +L +     +  E+   L+ +D+   V +  +  +  K  
Sbjct: 2   AFESLSERLGKAFKNITGKGKLSEKNMNDMLREVRMSLLEADVNYGVVKDFIARVKDKAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q V+  V + I  +L     P N+  +    V ++VG+ G GKTT   K
Sbjct: 62  GTEVMTSLNPGQMVVKIVHDEIVALLGNEEAPINYKKTGITTV-MMVGLQGTGKTTAAAK 120

Query: 131 LSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++         K +L A D  R AAI+QLK   +    +     + + A   A +A   A
Sbjct: 121 IANVMKKKQSRKPLLVACDVIRPAAIEQLKTLGESIDVEVFSLGVETKALETAQKAMDYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D ++ DTAGRLH +  LM  +  +   +       P  +L  +DA TGQ+ +   
Sbjct: 181 KEQGYDTVVFDTAGRLHIDEELMQELSDIKAFVH------PDDILLTVDAMTGQDIVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             FH     TGL++TK+DG +RGGG++ +    ++PV F+G+GE I DL+ F     +  
Sbjct: 235 SSFHEQLSVTGLVLTKLDGDSRGGGILSVRSITQVPVKFVGLGEKIEDLDVFHPDRMADR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|86742276|ref|YP_482676.1| signal recognition particle subunit FFH/SRP54 (srp54) [Frankia sp.
           CcI3]
 gi|86569138|gb|ABD12947.1| signal recognition particle subunit FFH/SRP54 (srp54) [Frankia sp.
           CcI3]
          Length = 517

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +    +    RL D   +    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FDTLSSRLDKVFASLRGRGRLTDADIDATAREIRVALLEADVALPVVRGFVAAVKERARG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   +    +     P VIL+ G+ G GKTT+ GKL
Sbjct: 62  AEVSASLNPAQQVIKIVNEELVAILGGGTTTLRY-AKTPPTVILLAGLQGTGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G   +L A D  R  A++QL++   R   +    E G+   D   +A +A   
Sbjct: 121 GRWLKAQGHTPLLVAADLQRPNAVNQLQVVGARAGVEVFAPEPGNGVGDPVRVARDALAH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A  +  DV+++DTAGRL  +  +M     +       D  +P  +L VLDA  GQ+A+  
Sbjct: 181 AHRQVFDVVVVDTAGRLGVDEEMMRQAADI------RDAVSPDEILFVLDAMIGQDAVAT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G +G+++TK+DG ARGG  + +      P+ F   GE ++D + F  +  ++
Sbjct: 235 ASAFADGVGFSGVVLTKLDGDARGGAALSVAQVTGRPIMFASTGEALDDFDVFHPERMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|27375592|ref|NP_767121.1| signal recognition particle protein [Bradyrhizobium japonicum USDA
           110]
 gi|27348729|dbj|BAC45746.1| signal recognition particle protein [Bradyrhizobium japonicum USDA
           110]
          Length = 630

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 135/305 (44%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +     L     D    E+   L+ +D+ + V +   E +  +   
Sbjct: 117 FDNLSERLGGILDRLTGRGALTEKDVDAAMREVRRALLEADVALEVVRSFTERVREQAIG 176

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + +   L    +  + + S  P  I++VG+ G GKTT   KL
Sbjct: 177 ATVVKSVTPGQMVVKIVHDELINTLGAEGQTIDIN-SVPPVPIMMVGLQGSGKTTTTAKL 235

Query: 132 SKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++M      KV++A+ D +R AA++QL +         +    G   A +A  A +  +
Sbjct: 236 ARRMVQRDRRKVLMASLDVYRPAAMEQLAVLGRDLDIPTLPIVAGQQPAQIAKRALEAGK 295

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  +MA    +           PH VL V D+ TGQ+A+    
Sbjct: 296 LGGYDVVLLDTAGRTTLDEDMMAEAAAIKAAAN------PHEVLLVADSLTGQDAVNLAR 349

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE  + LE F     +  I
Sbjct: 350 AFDERVGLTGIVLTRVDGDGRGGAALSMRAVTGKPIKLIGTGEKTDALEDFHPDRIAGRI 409

Query: 311 TGCLD 315
            G  D
Sbjct: 410 LGMGD 414


>gi|256784958|ref|ZP_05523389.1| signal recognition particle protein [Streptomyces lividans TK24]
          Length = 516

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +   +    E+   L+ +D+ + V +  ++++  +   
Sbjct: 2   FDTLSDRLSATFKSLRGKGRLTEADIDATAREIRIALLEADVALPVVRAFIKKVKERSLG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+VL  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSKALNPAQQVLKIVNEELVGILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              + + G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 121 GHWLKEQGHSPLLVACDLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  D++I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 AKAKVHDLVIVDTAGRLGIDQELMQQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I      P+ F   GE ++D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIASVTGKPIMFASNGEKLDDFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|116618657|ref|YP_819028.1| signal recognition particle-docking protein FtsY [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097504|gb|ABJ62655.1| signal recognition particle-docking protein FtsY [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 442

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 115/297 (38%), Positives = 172/297 (57%), Gaps = 10/297 (3%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
            G   +     +     +++ R +D+   E+LE+ L+ +D+G  +A KI +EL  +   K
Sbjct: 138 AGLKKSRTGFADRFNRFLANFRSVDENFFEDLEETLVGADVGFDMAIKISDELREEVKLK 197

Query: 78  DVSVQRVLYDVSELIHKMLM-------PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           +   +  + DV  +I KM+              N+    +  VIL VGVNGVGKTT IGK
Sbjct: 198 NAKRKEDVRDV--IIKKMVDLYEADGINEDATMNFAPKGQTTVILFVGVNGVGKTTTIGK 255

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K   AG  V+LAA DTFR+ A  QL+ W +R     V  +  +D A++ + A ++A+
Sbjct: 256 LASKYQKAGKSVLLAAADTFRAGATKQLQEWGERAHVPVVAGKEKADPASVVFAAVEKAR 315

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL +DTAGRL NN  LM  + KM R+++R  P APH VL VLDATTGQNAL+Q +
Sbjct: 316 DENYDVLFVDTAGRLQNNVNLMQELEKMKRIIQREIPEAPHEVLLVLDATTGQNALQQAK 375

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           +F   +  +G+++TKMDGTA+GG +  I     +PV ++G GE  +DL  F  ++F 
Sbjct: 376 LFKNSSDVSGIVLTKMDGTAKGGIVFAIRNEMHLPVKWIGFGEKASDLREFKPEEFV 432


>gi|295677731|ref|YP_003606255.1| signal recognition particle protein [Burkholderia sp. CCGE1002]
 gi|295437574|gb|ADG16744.1| signal recognition particle protein [Burkholderia sp. CCGE1002]
          Length = 455

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 146/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V   +  ++    +    + +     P +IL+ G+ G GKTT +
Sbjct: 62  EEVISSLSPGQALVGVVQRELTAVIGGDYEGKASELNLAVTPPAIILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK   ++  ADF  SE       +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADFFPSEPNQKPVDIARAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEAMMNEIAALHAELKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+++TK+DG +RGG  + +      PV F+GV E ++ LE F     +
Sbjct: 236 TAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPVKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 296 SRILGMGD 303


>gi|257452589|ref|ZP_05617888.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp.
           3_1_5R]
 gi|317059129|ref|ZP_07923614.1| signal recognition particle protein [Fusobacterium sp. 3_1_5R]
 gi|313684805|gb|EFS21640.1| signal recognition particle protein [Fusobacterium sp. 3_1_5R]
          Length = 449

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + ++    +    +L +       +E++  L+ +D+   V +  +E +  K   
Sbjct: 2   LDNLGSRFQDIFKKVRGHGKLSESNIKDALKEVKMSLLEADVNYKVVKDFIESIREKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V++ + ++L   +          P V+++ G+ G GKTT  GKL
Sbjct: 62  TEVLKGINPGQQFIKLVNDELVQLLGGTNARLT-KAPKNPTVLMLSGLQGAGKTTFAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     KV+L A D +R AAI QL++   +        E   D   +   A ++A+ 
Sbjct: 121 AKFLKKQNEKVLLVAADVYRPAAIKQLQVLGQQVDVAVYAEEGHQDVLGICERALEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +    +IIDTAGRLH +  LM  +  + R+        P  +L V+D+  GQ+A+   + 
Sbjct: 181 EHATYMIIDTAGRLHIDEALMEELRNIKRL------TRPQEILLVVDSMIGQDAVNLAKS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG  RGG  + I      P+ F+GVGE ++D+E F      + I 
Sbjct: 235 FNESLSIDGVVLTKLDGDTRGGAALSIKSVVGKPIKFIGVGEKLDDIELFHPDRLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|239928692|ref|ZP_04685645.1| signal recognition particle [Streptomyces ghanaensis ATCC 14672]
          Length = 516

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +   +    E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FDTLSDRLSATFKSLRGKGRLSEADIDATAREIRIALLEADVALPVVRTFIKNVKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+VL  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSKALNPAQQVLKIVNEELVTILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + + + G   +L A D  R  A++QL + A+R        E G+   D   +A ++   
Sbjct: 121 GRWLKEQGHSPVLVAADLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIDF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  D++I+DTAGRL  +  +M     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 ARAKVHDIVIVDTAGRLGIDQEMMQQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I      P+ F   GE ++D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIRQVTGKPIMFASNGEKLDDFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|296120454|ref|YP_003628232.1| signal recognition particle protein [Planctomyces limnophilus DSM
           3776]
 gi|296012794|gb|ADG66033.1| signal recognition particle protein [Planctomyces limnophilus DSM
           3776]
          Length = 491

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/303 (28%), Positives = 147/303 (48%), Gaps = 14/303 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S +  L+  +T I  S +L +       +++   L+ +D+   VA + +E++  +   
Sbjct: 2   FESITQGLQGALTGIFRSGKLTEANIREGLKQVRQALLEADVEYNVATQFIEKVTAEAVG 61

Query: 77  KDV-SVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLS 132
           + V    R    +  ++H+ L+ L  P +          + I++ G+ G GKTT  GKL+
Sbjct: 62  EKVLKSLRPDEQLIGIVHQQLIALMGPTDHSLHLRRDGINKIMMCGLQGAGKTTTCGKLA 121

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +K+   G K ++ A D  R AAI+QLK    +          G +  A+       A+  
Sbjct: 122 RKLKAEGWKPLMVAADMQRPAAIEQLKTLGQQLDVPVYAEAPGGNPVAVCKNGLAHAKTA 181

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             +V+I DTAGRLH +  LM  + ++   ++      P  V  V DA TGQ+A+R  + F
Sbjct: 182 GANVVIFDTAGRLHVDDRLMFELEQIDSRVQ------PDQVYLVCDAMTGQDAVRSAKAF 235

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +      G+I+TK+DG  RGG  I +     +P+ F+G+GE ++ LEPF     +  I G
Sbjct: 236 NDALELDGVILTKLDGDTRGGAAISVKQVTGVPIKFVGMGEQLDRLEPFHPDRMAGRILG 295

Query: 313 CLD 315
             D
Sbjct: 296 MGD 298


>gi|257791128|ref|YP_003181734.1| signal recognition particle protein [Eggerthella lenta DSM 2243]
 gi|317488142|ref|ZP_07946717.1| signal recognition particle protein [Eggerthella sp. 1_3_56FAA]
 gi|325832949|ref|ZP_08165622.1| signal recognition particle protein [Eggerthella sp. HGA1]
 gi|257475025|gb|ACV55345.1| signal recognition particle protein [Eggerthella lenta DSM 2243]
 gi|316912770|gb|EFV34304.1| signal recognition particle protein [Eggerthella sp. 1_3_56FAA]
 gi|325485814|gb|EGC88278.1| signal recognition particle protein [Eggerthella sp. HGA1]
          Length = 472

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 134/304 (44%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + S +L+   + +    RL +        E+   L+ +D+   V +  V     +   
Sbjct: 2   LENLSTRLQGIFSGLRGKGRLTEDDINDAMREIRMALLEADVNFKVVKSFVARTKERCLD 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + + ++L           S  P+VI++VG+ G GKTT   KL
Sbjct: 62  AEVLDSLTPAQNVIKIVLDELTELLGRTDSKLVLS-SRIPNVIMLVGLQGSGKTTAAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++       +L A D +R AA DQL+             + G D   +A E  + A  
Sbjct: 121 AYRLKQENHSPLLVACDVYRPAAADQLETLGGEIGVRVYRGD-GQDPVKIAQEGIQDAID 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRLH +  +M     + R +K      P  +L V+DA TGQ+ +     
Sbjct: 180 NLRDVVIVDTAGRLHVDDEMMDEAENIKRAVK------PDQILMVVDAMTGQDVVNVASA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G+IM+KMDG ARGGG + I      P+ F+  GE  + LE F     +  I 
Sbjct: 234 FSQRVDFDGVIMSKMDGDARGGGALSIKQVTGKPIKFISSGEKPDSLEEFHPDRMAKRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|254172921|ref|ZP_04879595.1| signal recognition 54 kDa protein [Thermococcus sp. AM4]
 gi|214033077|gb|EEB73905.1| signal recognition 54 kDa protein [Thermococcus sp. AM4]
          Length = 448

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRY 75
                   L   +  +  S  +D+ +  E    ++  LI+SD+ V +  ++ + +  +  
Sbjct: 2   ALEKLGKALNSALRKLARSSTVDEALIREVVRDIQRALIQSDVNVRLVLQLTKRIQERAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +         + V+  V E + K L   + P   +   +P ++L VG+ G GKTT I K
Sbjct: 62  NEKPPAGVSPREHVVKIVYEELTKFLGKEAVPL--EIREKPTILLTVGIQGSGKTTTIAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ +   G KV L   DT+R  A  QLK   +  + +        DA  LA E  +  +
Sbjct: 120 LARHLQKRGYKVGLVCTDTWRPGAYYQLKQLVEPYNIEVFGDPNEKDAIKLAREGVEHFR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K VDV+I+DTAGR    S L+  + ++   +K      PH V+ V+D T GQ A  Q  
Sbjct: 180 EKGVDVIIVDTAGRHKEESGLIEEMKQISEAIK------PHEVILVIDGTIGQQAYHQAL 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TK+DG+A+GGG +  V     P+ F+GVGE I+DLEPF  K F + +
Sbjct: 234 AFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPKRFVSRL 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGLGD 298


>gi|288802708|ref|ZP_06408146.1| signal recognition particle protein [Prevotella melaninogenica D18]
 gi|288334858|gb|EFC73295.1| signal recognition particle protein [Prevotella melaninogenica D18]
          Length = 450

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 142/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKTFTDTVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++   +   N   S RP +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIVHDELAELMGGEAVGLNL--SGRPSIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AAIDQLK+  ++            +   +A  A  +A+
Sbjct: 120 ANMLKTKEHKNPLLVACDVYRPAAIDQLKVVGEQVGVAVYSEPENKNVNEIADHALAEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++IIDTAGRL  +  +M  I  +   +       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGHDIVIIDTAGRLAVDEEMMNEIESLKNHVH------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFNGVVLTKLDGDTRGGAALSIRTVVTKPIKFIGTGEKMEAIDVFHPGRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|150398289|ref|YP_001328756.1| signal recognition particle protein [Sinorhizobium medicae WSM419]
 gi|150029804|gb|ABR61921.1| signal recognition particle protein [Sinorhizobium medicae WSM419]
          Length = 514

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   +  +     L +        E+   L+ +D+ + V +   E++  K   
Sbjct: 2   FESLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTEKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + +  ML       + + +  P VI++VG+ G GKTT  GK+
Sbjct: 62  AEIVKSIKPGQMVVKIVHDELVAMLGSEGVTIDLN-APAPVVIMMVGLQGSGKTTTTGKI 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+++     KV++A+ DT R AA +QL+    +T  D +    G     +A  A + A+
Sbjct: 121 AKRLTARDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGR H +  LM  + ++ R        +PH +L V DA TGQ+A+    
Sbjct: 181 LGGHDIVILDTAGRTHIDEPLMMEMAEIKR------KSSPHEILLVADALTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +GVGE +++LE F  +  +  I
Sbjct: 235 SFDERVGITGLVLTRMDGDGRGGAALSMRAITGKPIKLIGVGEKMDELEEFHPRRVADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|240104007|ref|YP_002960316.1| signal recognition particle protein Srp54 [Thermococcus
           gammatolerans EJ3]
 gi|259511389|sp|C5A233|SRP54_THEGJ RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|239911561|gb|ACS34452.1| Signal recognition particle, subunit SRP54 (srp54) [Thermococcus
           gammatolerans EJ3]
          Length = 448

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRY 75
                   L   +  +  S  +D+ +  E    ++  LI+SD+ V +  ++ + +  +  
Sbjct: 2   ALEKLGKALNSALRKLARSSTVDEALIREVVRDIQRALIQSDVNVRLVLQLTKRIQERAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +         + V+  V E + K+L   + P   +   +P ++L VG+ G GKTT I K
Sbjct: 62  NEKPPAGVSPREHVIKIVYEELTKLLGKEAVPL--EIREKPTILLTVGIQGSGKTTTIAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ +   G KV L   DT+R  A  QLK   +  + +        DA  LA E  +  +
Sbjct: 120 LARHLQKRGYKVGLVCTDTWRPGAYYQLKQLVEPYNIEVFGDPGEKDAIKLAREGVEYFK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K VDV+I+DTAGR    S L+  + ++   +K      PH V+ V+D T GQ A  Q  
Sbjct: 180 DKGVDVIIVDTAGRHKEESGLIEEMKQISEAIK------PHEVILVIDGTIGQQAYHQAL 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TK+DG+A+GGG +  V     P+ F+GVGE I+DLEPF  K F + +
Sbjct: 234 AFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPKRFVSRL 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGLGD 298


>gi|89902111|ref|YP_524582.1| signal recognition particle protein [Rhodoferax ferrireducens T118]
 gi|89346848|gb|ABD71051.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodoferax
           ferrireducens T118]
          Length = 454

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 144/304 (47%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ S KL   + +I    R+ +     +  E+   L+ +D+ + V +  +  +  K   +
Sbjct: 3   SALSDKLSRLVKEIRGQARITEANVTDMLREVRMALLEADVALPVVRDFIARVKEKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           DV       Q ++  V+  +   +       N   +  P VIL+ G+ G GKTT   KL+
Sbjct: 63  DVLGSLSPGQALVSIVNRELSSTMGEGVSDINL-AAQPPAVILMAGLQGAGKTTTTAKLA 121

Query: 133 KKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +    KV+  +GD +R AAI+QLK+   +  A++  S       A+A  A   A+ 
Sbjct: 122 KHLIEKRKKKVLTVSGDVYRPAAIEQLKMVTAQAGAEWFPSSPDQKPVAIALAALDYARK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  +  LM  I  +   L       P   L V+DA  GQ+A+   + 
Sbjct: 182 HFFDVLLVDTAGRLAIDEALMQEIKALHAALN------PVETLFVVDAMQGQDAVNTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK+DG +RGG  + +      P+ F G  E ++ LE F A+  +  I 
Sbjct: 236 FKDALPLTGIILTKLDGDSRGGAALSVRQVTGAPIKFAGTSEKLDGLEVFDAERHAGRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|239982565|ref|ZP_04705089.1| signal recognition particle protein [Streptomyces albus J1074]
          Length = 516

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 145/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +   +    E+   L+ +D+ + V +  ++++  +   
Sbjct: 2   FDTLSDRLAATFKSLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIKQVKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+++  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  EEVSKALNPAQQIIKIVNEELVGILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            K +   G   +L A D  R  A++QL + A+R        E G+   D   +A ++   
Sbjct: 121 GKWLQGQGHTPLLVAADLQRPNAVNQLSVVAERAGVGIFAPEPGNGVGDPVQVAKDSIAH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+ DV+++DTAGRL  +  LM     +       D   P  VL V+DA  GQ+A+  
Sbjct: 181 ARTKQYDVVVVDTAGRLGIDQELMQQAADI------RDAVQPDEVLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       + F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGKQIMFASNGEKLEDFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|325567327|ref|ZP_08143994.1| cell division protein FtsY [Enterococcus casseliflavus ATCC 12755]
 gi|325158760|gb|EGC70906.1| cell division protein FtsY [Enterococcus casseliflavus ATCC 12755]
          Length = 430

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 124/307 (40%), Positives = 186/307 (60%), Gaps = 4/307 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           + A E+ S   K TKG   +     + + ++ ++ R +D+   EE+E+ LI +D+G   A
Sbjct: 114 QAAPETESVQDKYTKGLTKSRKTFGQRMNELFANFRTVDEDFFEEVEETLIGADVGFDAA 173

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRP--HVILVVGVN 120
            KI + L  +   ++V     + +V  E +  +          + + +P   VIL VGVN
Sbjct: 174 MKIADALRQEVKLRNVKKTADVQNVIIEKLVDLYGEAGVGEVNELNMQPGLTVILFVGVN 233

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +    G KV+LAA DTFR+ AIDQL +W +R   + V    G D AA
Sbjct: 234 GVGKTTSIGKLAHQFKAEGKKVLLAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAA 293

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A ++A+ +  DVL++DTAGRL N   LM  + K+ R+++R+DP APH VL VLDAT
Sbjct: 294 VVFDAMERAKRENADVLLVDTAGRLQNKVNLMNELEKIKRIIQRVDPTAPHEVLLVLDAT 353

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q + F      +GL++TK+DGTA+GG ++ I    ++PV  +G+GEGINDLEP
Sbjct: 354 TGQNAMNQAKQFKETTDVSGLVLTKLDGTAKGGIVLAIRNELRLPVKLVGLGEGINDLEP 413

Query: 301 FVAKDFS 307
           F   +F 
Sbjct: 414 FDPNEFV 420


>gi|269795670|ref|YP_003315125.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sanguibacter
           keddieii DSM 10542]
 gi|269097855|gb|ACZ22291.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sanguibacter
           keddieii DSM 10542]
          Length = 527

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 147/316 (46%), Gaps = 28/316 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L     ++ +  RL     D    E+   L+ +D+ V V ++    +  +  +
Sbjct: 2   FATLSDRLTSTFKNLRTKGRLSEADIDATVREIRRALLDADVAVPVVREFTGTVRERALS 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   S+  N    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELVAILGGESRGLNL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD------------AA 179
           +  +   G   +L A D  R  A+ QLK+  +R        + G+               
Sbjct: 121 ALNLRQQGHTPLLVAADLQRPNAVTQLKVVGERAGVPVYAPDAGNQGAEGQSGVSTGDPV 180

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +A    + A++++ DV+IIDTAGRL  ++ LM     +       D  +P  +L V+DA
Sbjct: 181 TVARAGVETARSRQHDVVIIDTAGRLGVDAELMQQAADI------RDATSPDEILFVIDA 234

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             GQ+A+   + F      TG++++K+DG ARGG  + +      P+ F   GE + D E
Sbjct: 235 MIGQDAVATAQAFAEGVSFTGVVLSKLDGDARGGAALSVARVTGQPILFASTGEKLTDFE 294

Query: 300 PFVAKDFSAVITGCLD 315
            F     ++ I    D
Sbjct: 295 VFHPDRMASRILDMGD 310


>gi|308173558|ref|YP_003920263.1| signal recognition particle [Bacillus amyloliquefaciens DSM 7]
 gi|307606422|emb|CBI42793.1| signal recognition particle (docking protein) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553509|gb|AEB24001.1| signal recognition particle-docking protein FtsY [Bacillus
           amyloliquefaciens TA208]
 gi|328911699|gb|AEB63295.1| signal recognition particle (docking protein) [Bacillus
           amyloliquefaciens LL3]
          Length = 329

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 188/312 (60%), Gaps = 10/312 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+  ++ S   K   G   T       + +++S  R++D+   EELE++LI +D+G  
Sbjct: 8   KEKITKQTDSVSEKFKDGLEKTRNSFSNRVNELVSRYRKVDEDFFEELEEVLIGADVGFT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS------HRPHVIL 115
              ++++EL  +   K++   +   +V  +I + L+ +    N + S       R +VIL
Sbjct: 68  TVMELIDELKKEVKLKNIQDPQ---EVQSVISEKLVEIYNSGNEEISELNIQDGRLNVIL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VGVNGVGKTT IGKL+ K+ + G  V+LAAGDTFR+ AI+QL++W +RT    +    G
Sbjct: 125 LVGVNGVGKTTTIGKLAHKLKNEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQAAG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ Y+A   A+A+  DVLI DTAGRL N   LM  + K+ RV++R  P APH VL 
Sbjct: 185 SDPAAVIYDAVHAAKARGADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            LDATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I     IPV  +G+GE +
Sbjct: 245 ALDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKV 304

Query: 296 NDLEPFVAKDFS 307
           +DL+ F A+ + 
Sbjct: 305 DDLQRFDAESYV 316


>gi|126662097|ref|ZP_01733096.1| signal recognition particle protein [Flavobacteria bacterium BAL38]
 gi|126625476|gb|EAZ96165.1| signal recognition particle protein [Flavobacteria bacterium BAL38]
          Length = 448

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL + +  +    ++ D       +E+   L+ +D+   +A+     +  K   
Sbjct: 2   FDNLSDKLDKALHLLKGHGKITDVNVADTLKEVRRALLDADVNFKIAKDFTTRVKEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   +   N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  ENVLTTLQPGQLMVKIVKDELTELMGGDAAGINL--SGNPTVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAI+QL +   +   +        +   +A  A K A+
Sbjct: 120 ANFLKTKKNKKPLLVACDIYRPAAINQLHVVGGQIGVEVYSEPENKNPVEIAQNAIKHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   +V+I+DTAGRL  +  +M  I ++ + ++      P   L V+DA TGQ+A+   +
Sbjct: 180 ANGFNVVIVDTAGRLAVDEQMMNEIAEVHKAIQ------PEETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+I+TK+DG  RGG  I I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 AFNDRLNFDGVILTKLDGDTRGGAAISIKSVVNKPIKFIGTGEKMEAIDVFYPNRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|295135662|ref|YP_003586338.1| signal recognition particle protein [Zunongwangia profunda SM-A87]
 gi|294983677|gb|ADF54142.1| signal recognition particle protein [Zunongwangia profunda SM-A87]
          Length = 442

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL   +  +    ++ +       +E+   L+ +D+   +A++    +  K   
Sbjct: 2   FDNLSDKLDSALHVLKGHGQITEVNVAETLKEVRRALVDADVNYKIAKEFTNTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  V + +  ++   +   N      P VIL+ G+ G GKTT  GKL
Sbjct: 62  QDVLTALKPGQLMVKLVKDELTDLMGGEAAGVNLSGD--PSVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +    K +L A D +R AAI+QL +  ++   +    E   D  A++  A   A+
Sbjct: 120 ANYLKNKKTKKPLLVACDVYRPAAINQLHVVGEQLGVEVFSDEGNQDPVAISKAAIAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRL  +  +M  I  +   ++      PH  L V+D+ TGQ+A+   +
Sbjct: 180 ENGHNVVIIDTAGRLAVDEAMMTEISNIHTAIE------PHETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+I+TK+DG  RGG  I I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 AFNDRLDFDGVILTKLDGDTRGGAAISIKSVVNKPIKFIGTGEKMDAIDVFYPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|239624000|ref|ZP_04667031.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522031|gb|EEQ61897.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 458

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 151/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++ S  RL +       +E++  L+ +D+   V ++ + +L  +  
Sbjct: 2   AFESLSDKLQNVFKNLRSKGRLTEADVKAALKEVKMALLEADVSFRVVKQFISDLQKRAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +        +   +I++ G+ G GKTT   K
Sbjct: 62  GEDVFGSLTPGQTVVKIVTEELVKLMGSETTEIALKPGNEITIIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G K +LAA D +R AAI QL++  ++           +    +A  A + A 
Sbjct: 122 IAAKLKAKGRKPLLAACDVYRPAAIKQLQVNGEKVGIPVFSMGDKNKPVDIAKAAVEHAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++V+I+DTAGRLH +  +M  + ++   +        H  + V+DA TGQ+A+    
Sbjct: 182 KNGMNVVILDTAGRLHIDEDMMEELIEIKSNVD------VHQTILVVDAMTGQDAVNVSG 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 SFNDKVGIDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|83719534|ref|YP_441696.1| signal recognition particle protein [Burkholderia thailandensis
           E264]
 gi|167580506|ref|ZP_02373380.1| signal recognition particle protein [Burkholderia thailandensis
           TXDOH]
 gi|167618615|ref|ZP_02387246.1| signal recognition particle protein [Burkholderia thailandensis
           Bt4]
 gi|257137865|ref|ZP_05586127.1| signal recognition particle protein [Burkholderia thailandensis
           E264]
 gi|83653359|gb|ABC37422.1| signal recognition particle protein [Burkholderia thailandensis
           E264]
          Length = 455

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V +  + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVRDFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           +DV       Q ++  V + +  ++    +    + +     P +IL+ G+ G GKTT +
Sbjct: 62  EDVIGSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVTPPAIILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFPSTPDQKPVDIANAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   LK      P   L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHAALK------PVETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|307244407|ref|ZP_07526518.1| signal recognition particle protein [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492226|gb|EFM64268.1| signal recognition particle protein [Peptostreptococcus stomatis
           DSM 17678]
          Length = 452

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 152/304 (50%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+     + S  +L +   +    E++  L+ +D+   V +  V+ +  +   
Sbjct: 3   FEGLSDKLQNAFGKLRSKGKLTEADVKTAMREVKMALLEADVNFKVVKDFVKVVQERCVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V+E +  ++  +     +     P VI++VG+ G GKTT  GKL
Sbjct: 63  EEVLKSLTPGQMVVKIVNEELTALMGDVQSKLTYS-PQPPTVIMMVGLQGAGKTTTSGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              +   G   +L A D +R AAI QL++  ++                +A +A + A++
Sbjct: 122 GGYLKKDGKSPLLVACDVYRPAAIKQLQVVGEKLDLPVFAMGDQVSPVEIAKKALEHAKS 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRLH + +LM  +  +   +       P  +L V+D+ TGQ+A+   E 
Sbjct: 182 HSNDVVIIDTAGRLHVDEVLMQELKDIKTQVN------PQEILLVVDSMTGQDAVNVSES 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ + G  G+++TK+DG  RGG  + I    + P+ F+G+GE +++LEPF     ++ I 
Sbjct: 236 FNEILGIDGVVLTKLDGDTRGGAALSIRAVTQKPIKFIGMGEKLDNLEPFYPDRMASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|119505224|ref|ZP_01627299.1| Signal recognition particle protein [marine gamma proteobacterium
           HTCC2080]
 gi|119458915|gb|EAW40015.1| Signal recognition particle protein [marine gamma proteobacterium
           HTCC2080]
          Length = 460

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 139/306 (45%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L   +  +    RL +        E+   L+ +D+ + V +   E + T+   
Sbjct: 2   FEGLSDRLSASLKSMSGKSRLTEDNIRDTLREVRMALLEADVALEVVKSFTEAVKTRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q  L  V   + + +   ++    + +  P V++V G+ G GKTT I KL
Sbjct: 62  AEVAQSLTPGQEFLKIVQAELTQTMGSANEALTLN-AQPPAVVMVAGLQGAGKTTSIAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +       V + + D +R AAI QL+  A    A F  S +     A+   A + A+
Sbjct: 121 ARYLMEREKKSVAVVSADVYRPAAIKQLETLASEVGARFEPSSVEEKPVAIVNRALENAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +MA I ++   +       P   L V+DA  GQ+A+    
Sbjct: 181 LNFTDVLLVDTAGRLAVDDAMMAEIRELHAAVN------PIETLFVVDAMMGQDAVMTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+D   RGG  + +      P+ FLGVGE  + L+PF     ++ I
Sbjct: 235 AFGETLPLTGVILTKVDADTRGGAALSVRSVTGKPIKFLGVGEKTDALDPFHPDRLASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDL 300


>gi|229047532|ref|ZP_04193122.1| Signal recognition particle protein [Bacillus cereus AH676]
 gi|229081100|ref|ZP_04213610.1| Signal recognition particle protein [Bacillus cereus Rock4-2]
 gi|229146416|ref|ZP_04274787.1| Signal recognition particle protein [Bacillus cereus BDRD-ST24]
 gi|229192014|ref|ZP_04318984.1| Signal recognition particle protein [Bacillus cereus ATCC 10876]
 gi|228591565|gb|EEK49414.1| Signal recognition particle protein [Bacillus cereus ATCC 10876]
 gi|228637049|gb|EEK93508.1| Signal recognition particle protein [Bacillus cereus BDRD-ST24]
 gi|228702144|gb|EEL54620.1| Signal recognition particle protein [Bacillus cereus Rock4-2]
 gi|228723779|gb|EEL75134.1| Signal recognition particle protein [Bacillus cereus AH676]
          Length = 436

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 140/294 (47%), Gaps = 17/294 (5%)

Query: 32  ITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQ 82
           +  I    ++ +     +  E+   L+ +D+   V +  V+ +  +   +DV       Q
Sbjct: 1   MQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKRVSERAVGQDVMKSLTPGQ 60

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLK 141
           +V+  V E + +++           +  P VI++VG+ G GKTT  GKL+  +      K
Sbjct: 61  QVIKVVQEELTELMGGEQSKIAV-ANKPPTVIMMVGLQGAGKTTTTGKLANLLRKKHNRK 119

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            ML A D +R AAI QL+    +                +A +A  +A+    D ++IDT
Sbjct: 120 PMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDT 179

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   + FH   G TG+
Sbjct: 180 AGRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGV 233

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++TK+DG  RGG  + I      P+ F G+GE ++ +E F  +  ++ I G  D
Sbjct: 234 VLTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASRILGMGD 287


>gi|227488603|ref|ZP_03918919.1| signal recognition particle protein [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091497|gb|EEI26809.1| signal recognition particle protein [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 538

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/311 (27%), Positives = 148/311 (47%), Gaps = 30/311 (9%)

Query: 28  LKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--- 80
           + + +T +    +L +        E+   L+ +D+ + V +  ++ +  +   +DVS   
Sbjct: 1   MSDALTGLRGKGKLSEADINATAREIRLALLEADVSLPVVRGFIKRIKERAGGQDVSQAL 60

Query: 81  --VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
              Q+V+  V+E + ++L   ++       + P VI++ G+ G GKTT+ GKL+K ++  
Sbjct: 61  NPAQQVVKIVNEELIEILGGETRHLQM-AKNPPTVIMLAGLQGAGKTTLAGKLAKHLASQ 119

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSDAAALAYE 184
           G   ML A D  R  A+ QL+I  +R        +                 D   +A +
Sbjct: 120 GHTPMLVACDLQRPGAVQQLQIVGERAGVPTFAPDPGTTLDTTEHEMGTSHGDPVLVAKQ 179

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++A+ ++ DV+I+DTAGRL  +  LM     +       D   P  VL V+DA  GQ+
Sbjct: 180 GIEEAKRQQRDVVIVDTAGRLGIDEELMRQASNI------RDAVNPDEVLFVIDAMIGQD 233

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A++  + F    G TG+ +TK+DG ARGG  + I      P+ F   GE ++D + F  +
Sbjct: 234 AVQTAQAFRDGVGFTGVALTKLDGDARGGAALSIREVTGKPIMFASTGEKLDDFDVFHPE 293

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 294 RMASRILGMGD 304


>gi|154483576|ref|ZP_02026024.1| hypothetical protein EUBVEN_01280 [Eubacterium ventriosum ATCC
           27560]
 gi|149735486|gb|EDM51372.1| hypothetical protein EUBVEN_01280 [Eubacterium ventriosum ATCC
           27560]
          Length = 452

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 151/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++    RL +       +E++  L+ +D+   V +  V+++  +  
Sbjct: 4   AFESLSDKLQNIFKNLRGKGRLTEEDVKAALKEVKIALLEADVNFKVVKDFVKKVNERAV 63

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +        ++  VI+++G+ G GKTT   K
Sbjct: 64  GQDVMNSLTPGQMVIKIVNEELTNLMGSETTELKILPDNQITVIMMMGLQGAGKTTTTAK 123

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K+   G + +L A D +R AAI+QLKI  ++                +A  A + A+
Sbjct: 124 IAGKLKAKGKRPLLVACDVYRPAAIEQLKINGEKQQVPVFSMGDKQKPLNIAKAAIEHAK 183

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRLH +  +M  + ++   ++          + V+DA TGQ+A+   +
Sbjct: 184 KNNNNVVILDTAGRLHVDEDMMNELVEIRDNIE------LTQTVLVVDAMTGQDAVNVAK 237

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 238 EFNEKIGIDGIIVTKLDGDTRGGAALSIKAITGKPILYIGMGEKLSDLEQFHPDRMASRI 297

Query: 311 TGCLD 315
            G  D
Sbjct: 298 LGMGD 302


>gi|229824955|ref|ZP_04451024.1| hypothetical protein GCWU000182_00304 [Abiotrophia defectiva ATCC
           49176]
 gi|229790958|gb|EEP27072.1| hypothetical protein GCWU000182_00304 [Abiotrophia defectiva ATCC
           49176]
          Length = 446

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 138/305 (45%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL +   ++    +L++       +E++  L+ +D+   VA+  ++ +  +  
Sbjct: 2   AFDSLTEKLTKVFKNLRGKGKLNENDVKAALKEVKIALLEADVNFKVAKNFIKTVEERAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  +L           +    VI++ G+ G GKTT   K
Sbjct: 62  GQDVMNSLTPGQMVIKIVNEEMTALLGSEKTELTLKPTQEITVIMMCGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K      K +L A D +R AAI QL++  ++          G     +A  A + A+
Sbjct: 122 IAAKFK-GTRKPLLVACDVYRPAAIKQLQVNGEKVGVPVFTMGDGHKPPNIAKAAIEHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++ +DTAGRL  +  +M  +  +   +           L V+DA TGQ A+    
Sbjct: 181 NNDYNMIFLDTAGRLQIDEDMMQELVDIKEAVD------VTQTLLVVDAMTGQEAVNVAT 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F +     G+++TK+DG  RGG  + I      P+ + G+GE ++DLE F     +  I
Sbjct: 235 TFDSKIELDGVVLTKLDGDTRGGAALSIRSVTGKPILYAGMGEKLSDLEQFYPDRMANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|111225152|ref|YP_715946.1| Signal recognition particle GTPase [Frankia alni ACN14a]
 gi|111152684|emb|CAJ64425.1| Signal recognition particle GTPase [Frankia alni ACN14a]
          Length = 517

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 147/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +  T +    RL D   +    E+   L+ +D+ + V +  V  + ++   
Sbjct: 2   FDTLSSRLDKVFTSLRGRGRLTDADIDATAREIRVALLEADVALPVVRSFVAAIKSRARG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V+E +  +L   +    +     P VIL+ G+ G GKTT+ GKL
Sbjct: 62  AEVGASLNPAQQVIKIVNEELVAILGGGTTTLRF-AKTPPTVILLAGLQGTGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G   +L A D  R  A++QL++   R   +    E G+   D   +A +A   
Sbjct: 121 GRWLKAQGHTPLLVAADLQRPNAVNQLQVVGARAGVEVFAPEPGNGVGDPVRVARDALAH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ +  DV+++DTAGRL  +  LM     +       D  +P  +L VLDA  GQ+A+  
Sbjct: 181 ARRQVFDVVVVDTAGRLGVDEELMRQAADI------RDAVSPDEILFVLDAMIGQDAVAT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G +G+++TK+DG ARGG  + +      P+ F   GE ++D + F  +  ++
Sbjct: 235 ANAFADGVGFSGVVLTKLDGDARGGAALSVAQVTGRPIMFASTGEALDDFDVFHPERMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|229086400|ref|ZP_04218576.1| Cell division protein ftsY [Bacillus cereus Rock3-44]
 gi|228696916|gb|EEL49725.1| Cell division protein ftsY [Bacillus cereus Rock3-44]
          Length = 329

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 186/310 (60%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D+    R++D+   EELE++LI +D+GVA
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVFRYRKVDEDFFEELEEILIGADVGVA 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   + +  V       I+K     S   N        VIL V
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDEKFSNEINMQQDQ-LTVILFV 126

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 127 GVNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 187 PAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVI 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      +G+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 247 DATTGQNGLSQAKTFREATNVSGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDD 306

Query: 298 LEPFVAKDFS 307
           L+ F  + + 
Sbjct: 307 LQQFDPEQYV 316


>gi|170781182|ref|YP_001709514.1| signal recognition particle protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155750|emb|CAQ00871.1| signal recognition particle protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 523

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 144/307 (46%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L E   ++    +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FGTLSDRLAETFKNLRGKGKLSAADVDGTVREIRRALLEADVALDVVKAFTASVRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L    +   +     P VI++ G+ G GKTT+ GKL
Sbjct: 64  GEVSQALNPAQQVVQIVNEELVAILGGQQRRIQF-AKRPPTVIMLAGLQGAGKTTLAGKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---GSDAAALAYEAFKQ 188
            K ++  G   ML A D  R  A+ QL++  ++        E      +   +A +A K 
Sbjct: 123 GKWLAKDGHTPMLVAADLQRPNAVQQLQVVGEQAGVPVFAPEPGNGTGNPVRVAKDAMKH 182

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A  K+  V+IIDTAGRL  ++ LM     + +         P  VL V+DA  GQ+A+  
Sbjct: 183 AVGKQYSVVIIDTAGRLGVDAELMKQAADIRKATD------PDEVLFVIDAMIGQDAVAT 236

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG++++K+DG ARGG  + +      P+ F   GEG++D EPF     ++
Sbjct: 237 AKAFQDGVDFTGVVLSKLDGDARGGAALSVASVTGRPIMFASTGEGLDDFEPFHPDRMAS 296

Query: 309 VITGCLD 315
            I    D
Sbjct: 297 RILDLGD 303


>gi|304437009|ref|ZP_07396972.1| signal recognition particle protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369960|gb|EFM23622.1| signal recognition particle protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 458

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 140/304 (46%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    +L +        E+   L+ +D+   V +  V  +  +   
Sbjct: 3   FENLSDRLQGIFKKLRGHGKLTEDDVNDAMREVRMALLEADVNFKVVKDFVRRVKERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V     + Q V+  V E +  ++       N    + P VI++VG+ G GKTT  GKL
Sbjct: 63  QEVLDTLTAAQAVVKIVDEELTALMGGTESRLNIS-PNPPTVIMLVGLQGSGKTTSAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L A D +R AAI QL++   +              A         + +
Sbjct: 122 ALMLKKQGKRPLLVADDIYRPAAIKQLEVIGGKVDVPVFSQGQEDAVAIARAA-IAHSSS 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRL  +  LM  +  +   +K      PH +L V+DA TGQ A+   E 
Sbjct: 181 HANDVVIIDTAGRLQIDETLMQELRDIKAEVK------PHEILLVVDAMTGQEAVNVAEA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A  G  G+IMTK+DG ARGG  + I      P+ F+G+GE +  LE F     ++ I 
Sbjct: 235 FDASLGLDGVIMTKLDGDARGGAALSIKAVTGCPLKFVGMGEKLEPLEVFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|297191798|ref|ZP_06909196.1| signal recognition particle [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151070|gb|EFH30942.1| signal recognition particle [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 517

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V ++ ++++  +   
Sbjct: 2   FDTLSDRLSATFKNLRGKGRLSEADIDGAAREIRIALLEADVALPVVREFIKQVKARSLG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  SEVSKALNPSQQVIKIVNEELIGILGGETRRLRF-AKTPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              +   G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 121 GLWLKSQGHSPLLVACDLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEY 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  D++I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 ARTKVHDIVIVDTAGRLGIDQELMQQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + +       + F   GE ++D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSVAHVTGKQIMFASNGEKLDDFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I G  D 
Sbjct: 295 RILGMGDM 302


>gi|228909672|ref|ZP_04073495.1| Cell division protein ftsY [Bacillus thuringiensis IBL 200]
 gi|228849961|gb|EEM94792.1| Cell division protein ftsY [Bacillus thuringiensis IBL 200]
          Length = 329

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/310 (39%), Positives = 186/310 (60%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K   G   T     + + D++   R++D+   EELE++LI +D+GVA
Sbjct: 8   KEKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVA 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   + +  V       I+K     S   N        V+L V
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSDFSNEINMQEDQ-LTVVLFV 126

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 127 GVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 187 PAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVI 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 247 DATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDD 306

Query: 298 LEPFVAKDFS 307
           L+ F  + + 
Sbjct: 307 LQQFDPEQYV 316


>gi|227536075|ref|ZP_03966124.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227243972|gb|EEI93987.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 445

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL      +     + +       +E+   L+ +D+    A+   +++  K   
Sbjct: 2   FQNLQDKLDRAFKVLKGQGNITEINVAETMKEIRKALLDADVNYKTAKSFTDDVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q +   +++ + +++         D S  P VIL+ G+NG GKTT  GKL
Sbjct: 62  QNVLTSISPGQLLTKIMNDELTELMGGAVTEL--DISKNPTVILIAGLNGAGKTTFSGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + D  G K +L AGD +R AAIDQL++   +       +   +D  A+A    ++A+
Sbjct: 120 ANYLKDKKGKKPLLVAGDVYRPAAIDQLEVLGGQVGVPVFVNRESNDPIAIAQAGVEEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRL  +  LM  I  +    K      P  +L V+D+ TGQ+A+   +
Sbjct: 180 RNGHNVVIIDTAGRLAIDEALMVEITAVKEATK------PQEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG  RGG  + I      P+ F+G GE +  L+ F     ++ I
Sbjct: 234 AFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVNKPIKFIGTGEKMEALDVFYPDRMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|229174513|ref|ZP_04302045.1| Cell division protein ftsY [Bacillus cereus MM3]
 gi|228609073|gb|EEK66363.1| Cell division protein ftsY [Bacillus cereus MM3]
          Length = 329

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 186/310 (60%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K   G   T     + + D++   R++D+   EELE++LI +D+GV+
Sbjct: 8   KEKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVS 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   + +  V       I+K     S   N        V+L V
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSEFSNEINMQEDQ-LTVVLFV 126

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 127 GVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 187 PAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVI 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 247 DATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDD 306

Query: 298 LEPFVAKDFS 307
           L+ F  + + 
Sbjct: 307 LQQFDPEQYV 316


>gi|308274695|emb|CBX31294.1| Signal recognition particle protein [uncultured Desulfobacterium
           sp.]
          Length = 449

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 155/305 (50%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F S S KL+     +     ++ + +++G  +E+   L+ +D+   V +K+V ++  +  
Sbjct: 8   FDSLSEKLENIFKQLKGHGKLTEKNIEEG-LKEVRMALLEADVHYKVVKKLVADIKERSL 66

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V        +V+  V++ + +++    +      S  P  I++VG+ G GKTT  GK
Sbjct: 67  GQEVMASLTPGHQVIKIVNDELTRLMGSSHQEIVLSGSV-PVSIMLVGLQGSGKTTTAGK 125

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++  +   G K  L   D +R AAIDQL+  A++       S +  D   +  +A   AQ
Sbjct: 126 IAIFLRQKGRKPFLVPADVYRPAAIDQLRKIAEQIGVPAFESSVDMDPVDICLKAKTTAQ 185

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D LI+DTAGRLH N  LMA + ++   +K  D      +L V DA TGQ+A+   +
Sbjct: 186 KLGCDTLILDTAGRLHINEELMAELSRIKNAVKPSD------ILLVADAMTGQDAVNISK 239

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F +     G+I+TKMDG ARGG  + I      P+ F+GVGE ++ LEPF     S+ I
Sbjct: 240 SFDSSLDIGGVILTKMDGDARGGAALSIKAITNKPIKFIGVGEKLSALEPFYPDRMSSRI 299

Query: 311 TGCLD 315
            G  D
Sbjct: 300 LGMGD 304


>gi|218899000|ref|YP_002447411.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           G9842]
 gi|228902350|ref|ZP_04066507.1| Cell division protein ftsY [Bacillus thuringiensis IBL 4222]
 gi|228966793|ref|ZP_04127837.1| Cell division protein ftsY [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218543677|gb|ACK96071.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           G9842]
 gi|228792892|gb|EEM40450.1| Cell division protein ftsY [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857319|gb|EEN01822.1| Cell division protein ftsY [Bacillus thuringiensis IBL 4222]
          Length = 329

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/310 (39%), Positives = 186/310 (60%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K   G   T     + + D++   R++D+   EELE++LI +D+GVA
Sbjct: 8   KEKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVA 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   + +  V       I+K     S   N        V+L V
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSDFSNEINMQEDQ-LTVVLFV 126

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 127 GVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 187 PAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVI 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 247 DATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEIDVPVKFVGLGEQMDD 306

Query: 298 LEPFVAKDFS 307
           L+ F  + + 
Sbjct: 307 LQQFDPEQYV 316


>gi|228940935|ref|ZP_04103494.1| Cell division protein ftsY [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228973864|ref|ZP_04134440.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980454|ref|ZP_04140764.1| Cell division protein ftsY [Bacillus thuringiensis Bt407]
 gi|228779274|gb|EEM27531.1| Cell division protein ftsY [Bacillus thuringiensis Bt407]
 gi|228785889|gb|EEM33892.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818771|gb|EEM64837.1| Cell division protein ftsY [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326941616|gb|AEA17512.1| cell division protein ftsY [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 329

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/310 (39%), Positives = 186/310 (60%), Gaps = 6/310 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K   G   T     + + D++   R++D+   EELE++LI +D+GVA
Sbjct: 8   KEKISKQTDTVTEKFKHGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILIGADVGVA 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              +++++L  +   +++   + +  V       I+K     S   N        V+L V
Sbjct: 68  TVMELIDQLKEEVQRRNIQDPKEVQAVISEKLVGIYKGDSDFSNEINMQEDQ-LTVVLFV 126

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 127 GVNGVGKTTTIGKLAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+
Sbjct: 187 PAAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVI 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++D
Sbjct: 247 DATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDD 306

Query: 298 LEPFVAKDFS 307
           L+ F  + + 
Sbjct: 307 LQQFDPEQYV 316


>gi|167842001|ref|ZP_02468685.1| signal recognition particle protein [Burkholderia thailandensis
           MSMB43]
          Length = 455

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V +  + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVRDFIAKVREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           +DV       Q ++  V + +  ++    +    + +     P +IL+ G+ G GKTT +
Sbjct: 62  EDVVGSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVTPPAIILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFPSTPDQKPVDIANAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   L+      P   L V+DA  GQ+A+ 
Sbjct: 182 WARRHYHDVLLVDTAGRLGIDEAMMREIAALHAALE------PVETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|160872071|ref|ZP_02062203.1| signal recognition particle protein [Rickettsiella grylli]
 gi|159120870|gb|EDP46208.1| signal recognition particle protein [Rickettsiella grylli]
          Length = 451

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +LK    +I    RL++  ++E L +     I +D+   V + I+E++      
Sbjct: 2   FDNLTARLKHSFKNIRGQGRLNEHNIKESLREVKKAFIEADVAYPVVKAIIEQVRQGAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q  +  V++ +  ++       N   +  P V+++ G+ G GKTT + KL
Sbjct: 62  QKVTESLAPGQAFIKIVNDTLTTIMGSHLSELNLS-AQTPIVMMIAGLQGSGKTTTVAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +       V+L + D  R AAI QL+  A+ ++  F  S        +   A + A+
Sbjct: 121 AAWLKTQKNKSVLLTSTDIHRPAAILQLENLAENSNVLFHPSCASQTPTFIVQTAIQTAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K VDV+IIDTAGRLH +  +M  +  +  V        P   L VLD+  GQ+A++  +
Sbjct: 181 NKGVDVVIIDTAGRLHIDDRMMEELRTIHTV------GNPIETLFVLDSMMGQDAVKVAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V   +G+I++KMD  ARGG  + +      P+ F+G GE +  LEPF     ++ I
Sbjct: 235 GFNDVIPLSGIILSKMDADARGGAALSVKFMLGKPIKFIGSGEKVTALEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|302335829|ref|YP_003801036.1| signal recognition particle subunit FFH/SRP54 (srp54) [Olsenella
           uli DSM 7084]
 gi|301319669|gb|ADK68156.1| signal recognition particle subunit FFH/SRP54 (srp54) [Olsenella
           uli DSM 7084]
          Length = 465

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 135/304 (44%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+     +    RL +        E+   L+ +D+   V +  V     K   
Sbjct: 2   FNSLSDRLQSTFDALRGKGRLTEDDINKAMREIRMALLEADVNYRVVKGFVASCKEKCMT 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + + ++L           +  P+VI++VG+ G GKTT   KL
Sbjct: 62  AEVLDSLSPAQNVVRIVLDELTRLLGSTESKLVLAQNRTPNVIMMVGLQGSGKTTASAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +LAA DT R AA DQL+             +       +A EA + A  
Sbjct: 122 AYLLRREGHSPLLAACDTHRPAAADQLETLGSEIGVGVYRGDGKDAVR-VATEAIRAAVD 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRL  +  +M     +   +K      P  +L V+DA TGQ+ +  V  
Sbjct: 181 HLNDIVIVDTAGRLQIDEEMMQEAVDIKSAVK------PDQILMVVDAMTGQDIVNVVRE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F +     G+IM+K+DG ARGGG + +      P+ ++ +GE  + LE F     +  I 
Sbjct: 235 FASRVDFDGVIMSKLDGDARGGGALSVREVTGKPIKYVSLGEKPDSLEVFHPDRMAKRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|288922435|ref|ZP_06416623.1| signal recognition particle protein [Frankia sp. EUN1f]
 gi|288346238|gb|EFC80579.1| signal recognition particle protein [Frankia sp. EUN1f]
          Length = 526

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 146/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +  T +    RL D   +    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FDTLSSRLDKVFTSLRGRGRLTDADIDATAREIRVALLEADVALPVVRGFVAAVKERARG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   +    +     P VIL+ G+ G GKTT+ GKL
Sbjct: 62  AEVSASLNPAQQVIKIVNEELVAILGGGTTTVRF-AKTPPTVILLAGLQGTGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G   +L A D  R  A++QL++   R   +    E G+   D   +A +A   
Sbjct: 121 GRWLKAQGHTPLLVAADLQRPNAVNQLQVVGGRAGVEVFAPEPGNGVGDPVRVARDALAH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGRL  +  +M     +       D  +P  +L VLDA  GQ+A+  
Sbjct: 181 ARRHVFDVVVVDTAGRLGVDEEMMRQAADI------RDAVSPDEILFVLDAMIGQDAVST 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G +G+++TK+DG ARGG  + +      P+ F   GE + D + F  +  ++
Sbjct: 235 AQAFADGVGFSGVVLTKLDGDARGGAALSVARVTGAPIMFASTGESLEDFDVFHPERMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|56477903|ref|YP_159492.1| signal recognition particle protein [Aromatoleum aromaticum EbN1]
 gi|56313946|emb|CAI08591.1| Signal recognition particle protein [Aromatoleum aromaticum EbN1]
          Length = 452

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 142/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +        E+   L+ +D+ + V +  V  +  K   
Sbjct: 2   LDNLTQRLSRVVKTLRGQARLTEDNIQEAMREVRLALLEADVALPVVKDFVARVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++       N   +  P V+L+ G+ G GKTT  GKL
Sbjct: 62  QEVIGSLTPGQALVGVVHDELKTLMGGAHVGLNL-ATQPPAVVLMAGLQGAGKTTTTGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV+  + D +R AAI+QLK  + +   DF  S        +A  A   A+
Sbjct: 121 GKLLHERMKKKVLAVSADVYRPAAIEQLKAVSAQAGIDFFPSTPDQKPVDIALAAIDHAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGRL  ++ +M  I  +    K      P   L V+DA  GQ+A+    
Sbjct: 181 RHYYDVVLLDTAGRLAIDAAMMDEIKALHAAAK------PIETLFVVDAMLGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + +      P+ F GVGE ++ LE F  +  ++ I
Sbjct: 235 AFNEALPLTGVVLTKLDGDARGGAALSVRHVTGKPLKFAGVGEKLSGLEEFHPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|257466448|ref|ZP_05630759.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917604|ref|ZP_07913844.1| signal recognition particle protein [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691479|gb|EFS28314.1| signal recognition particle protein [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 449

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + ++    +    +L +       +E++  L+ +D+   V +  +E +  K   
Sbjct: 2   LDNLGSRFQDIFKKVRGHGKLSESNIKDALKEVKMSLLEADVNYKVVKDFIESIREKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V++ + ++L   +          P V+++ G+ G GKTT  GKL
Sbjct: 62  TEVLKGINPGQQFIKLVNDELVQLLGGTNARLT-KAPKNPTVLMLSGLQGAGKTTFAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     KV+L A D +R AAI QL++   +        E   D   +   A ++A+ 
Sbjct: 121 AKFLKKQNEKVLLVAADVYRPAAIKQLQVLGQQVDVAVYAEEGHQDVLGICERALEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +    +IIDTAGRLH +  LM  +  + R+        P  +L V+D+  GQ+A+   + 
Sbjct: 181 EHATYMIIDTAGRLHIDEALMEELRNIKRL------TRPQEILLVVDSMIGQDAVNLAKS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG  RGG  + I      P+ F+GVGE ++D+E F      + I 
Sbjct: 235 FNESLSIDGVVLTKLDGDTRGGAALSIKSVVGKPIKFIGVGEKLDDIELFHPDRLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|161525962|ref|YP_001580974.1| signal recognition particle protein [Burkholderia multivorans ATCC
           17616]
 gi|189349319|ref|YP_001944947.1| signal recognition particle subunit SRP54 [Burkholderia multivorans
           ATCC 17616]
 gi|221202411|ref|ZP_03575443.1| signal recognition particle protein [Burkholderia multivorans
           CGD2M]
 gi|221208129|ref|ZP_03581134.1| signal recognition particle protein [Burkholderia multivorans CGD2]
 gi|221213245|ref|ZP_03586220.1| signal recognition particle protein [Burkholderia multivorans CGD1]
 gi|160343391|gb|ABX16477.1| signal recognition particle protein [Burkholderia multivorans ATCC
           17616]
 gi|189333341|dbj|BAG42411.1| signal recognition particle subunit SRP54 [Burkholderia multivorans
           ATCC 17616]
 gi|221166697|gb|EED99168.1| signal recognition particle protein [Burkholderia multivorans CGD1]
 gi|221172032|gb|EEE04474.1| signal recognition particle protein [Burkholderia multivorans CGD2]
 gi|221177688|gb|EEE10103.1| signal recognition particle protein [Burkholderia multivorans
           CGD2M]
          Length = 455

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++    +    + +     P VIL+ G+ G GKTT  
Sbjct: 62  EEVISSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVSPPAVILMAGLQGAGKTTTA 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADFFPSTPDQKPVDIAVAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRL  +  +M  I  +  VLK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGVLKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|91201020|emb|CAJ74078.1| strongly similar to signal recognition particle protein [Candidatus
           Kuenenia stuttgartiensis]
          Length = 450

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 146/304 (48%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S +  L+  +       RL +G  +    E+   L+ +D+   V +  ++++  +   
Sbjct: 2   FESITNSLEAVLGKFRGKGRLTEGNIKDGLHEVRLALLEADVNYKVVKNFIKQVTERSVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + + K++        +    +  V+++VG+ G GKTT  GKL
Sbjct: 62  EEVIKSVAPGQQVVKIVHDELIKLMGESDTSIPFKEGGQ-TVVMLVGLQGSGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ M   G K +LAA D  R AA++QLK    +        E       +  EA K A+ 
Sbjct: 121 ARLMLSKGKKPLLAAADIQRPAAVEQLKTLGRQLDIQVY-FEKDLPPIKICSEAIKYAKE 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRLH ++ LM  + ++   L       P  +  V DA TGQ+A+     
Sbjct: 180 NGHDVVILDTAGRLHIDNELMLELREIKDTLT------PDQIYFVCDAMTGQDAVNSARE 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+I++K+DG  RGG  + I      P+ F+G+GE ++ LE F     ++ I 
Sbjct: 234 FDEQLGFDGVILSKLDGDTRGGAALSIRAVTGKPIKFVGIGEKLDRLEEFHPDRMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|162447213|ref|YP_001620345.1| signal recognition particle GTPase [Acholeplasma laidlawii PG-8A]
 gi|161985320|gb|ABX80969.1| signal recognition particle GTPase [Acholeplasma laidlawii PG-8A]
          Length = 318

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 110/311 (35%), Positives = 173/311 (55%), Gaps = 15/311 (4%)

Query: 11  LSWIRKLTK----------GFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIG 59
           + +  +L K          G   +     + +  ++     ++D + + +EDLLI +DIG
Sbjct: 1   MGFFSRLFKKKPKNDKYQMGLHKSRSSF-DNLKKLLDESDTINDDLFDAIEDLLISADIG 59

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFS-HRPHVILV 116
           V        EL  +   K       L    V +L    L          F+    +V L 
Sbjct: 60  VDTVLHFTNELRNEVINKQFENPSDLSETIVDKLFEIYLKDEFVDTTLSFTEGEVNVFLF 119

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+K+  D G KV++ AGDTFR+ AI+QL  W+ R   DF   + GS
Sbjct: 120 VGVNGVGKTTTIGKLAKQYKDQGKKVLMVAGDTFRAGAIEQLYEWSKRAKVDFYQKDAGS 179

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D +++ +EA ++A+ +  D++++DTAGRL N   LM  + KM RV+++  P  P   L V
Sbjct: 180 DPSSVIFEALEKAKKETYDLVLVDTAGRLQNKVNLMNELSKMKRVIEKALPSQPAETLLV 239

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DATTGQN + Q ++F+     TG+++TK+DGTA+GG ++ I   + +P+ ++G+GE I+
Sbjct: 240 IDATTGQNGMNQAKVFNEATDLTGIVLTKLDGTAKGGIVLAIRHLYNLPIKYVGLGEKID 299

Query: 297 DLEPFVAKDFS 307
           DL PF  +D+ 
Sbjct: 300 DLVPFDIEDYI 310


>gi|82703253|ref|YP_412819.1| signal recognition particle protein [Nitrosospira multiformis ATCC
           25196]
 gi|82411318|gb|ABB75427.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nitrosospira
           multiformis ATCC 25196]
          Length = 449

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   I  +    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTNRLSGVIKTLRGEARLTETNIQEALREVRMALLEADVALPVIKEFIARVKEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++       N      P VIL+ G+ G GKTT  GKL
Sbjct: 62  QEVIGSLTPGQALVGVVHQELIALMGGQKADINLATV-PPAVILMAGLQGAGKTTSSGKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KV+L + D +R AAI QL++ A +T A+F   + G     +A  A   A+
Sbjct: 121 AKWLMEQKKKKVLLVSCDIYRPAAIQQLELLARQTGAEFFPVQAGQQPKEIAAAALNFAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRL  +  +MA I ++  +LK      P   L V+DA  GQ+A+   +
Sbjct: 181 RHFHDVMIVDTAGRLAIDEAMMAEISELEALLK------PIETLFVVDAMQGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + ++     P+ F GV E +  LEPF     ++ I
Sbjct: 235 AFSEALPLTGVVLTKLDGDARGGAALSVLHVTGKPIKFAGVAEKLTGLEPFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|21673041|ref|NP_661106.1| signal recognition particle-docking protein FtsY [Chlorobium
           tepidum TLS]
 gi|21646108|gb|AAM71448.1| signal recognition particle-docking protein FtsY [Chlorobium
           tepidum TLS]
          Length = 316

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/304 (39%), Positives = 181/304 (59%), Gaps = 6/304 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + +L +G   T   L++ +  +   +  +DD   EELE++L+ +D+GV     IV+ +  
Sbjct: 9   LSRLKEGLTKTRDTLRDKLAFVSRGKTEVDDEFLEELENILVAADVGVETTLDIVDAVTV 68

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTV 127
           +   K    +  L + V   I  +L+         F+   S +P+VI++VGVNG GKTT 
Sbjct: 69  RSKGKTYRSEEELNEMVMGEIRNLLVESGHEHPVDFDAPLSAKPYVIMIVGVNGAGKTTT 128

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           + KL+     AG KV++AA DTFR+AA +QLKIWADR     +    G+D A++ +++  
Sbjct: 129 VAKLAHNYDKAGKKVVIAAADTFRAAAYEQLKIWADRAGVPIIGQGQGADPASVVFDSVS 188

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A +K  DV+++DTAGRLHN S LM  + K++RV K+  P APH VL VLD TTGQNA++
Sbjct: 189 SAVSKGTDVVLVDTAGRLHNKSHLMEELAKIMRVAKKKIPEAPHEVLLVLDGTTGQNAVQ 248

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F      TGL+MTK+DGT++GG ++ I     +PV ++GVGE I+DL+ F  K F 
Sbjct: 249 QAREFTKFVNVTGLVMTKLDGTSKGGIVLSISRELNLPVKYIGVGEKIDDLQLFDRKSFV 308

Query: 308 AVIT 311
             + 
Sbjct: 309 EALL 312


>gi|288924926|ref|ZP_06418862.1| signal recognition particle protein [Prevotella buccae D17]
 gi|288338116|gb|EFC76466.1| signal recognition particle protein [Prevotella buccae D17]
          Length = 447

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+     +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETMKDVRRALLDADVNFKVAKNFTNTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++     P      +RP +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKLVHDELAELMGGEDAPLVLK--NRPAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AAIDQLK+  ++            D  A+A  A K+A+
Sbjct: 120 ANMLKTKEHKNPLLVACDVYRPAAIDQLKVVGEQVGVPVYAEPDNKDVIAIAANALKEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+IIDTAGRL  +  +M  I  + + +       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKNYDVVIIDTAGRLAVDEQMMTEISNLKQAVS------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFIGTGEKMEAIDVFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|282859593|ref|ZP_06268697.1| signal recognition particle protein [Prevotella bivia JCVIHMP010]
 gi|282587644|gb|EFB92845.1| signal recognition particle protein [Prevotella bivia JCVIHMP010]
          Length = 453

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + + TK   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKSFTDTVKTKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + +  ++    +      + RP +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKLVHDELADLMGG--EAVGLKLTSRPAIILMSGLQGSGKTTFTGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AAI+QLK+  ++ +          +   +A  A  +A+
Sbjct: 120 ANMLKAKEHKTPLLVACDVYRPAAIEQLKVVGEQVNVPVYSEPENKNVNEIATHAIAEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+IIDTAGRL  +  +M  I  +   +       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGNDVVIIDTAGRLAIDEDMMNEIESLKNHVN------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F  +  +  I
Sbjct: 234 EFNDRLDFNGVVLTKLDGDTRGGAALSIRTVVTKPIKFIGTGEKMEAIDVFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|239917431|ref|YP_002956989.1| signal recognition particle subunit FFH/SRP54 (srp54) [Micrococcus
           luteus NCTC 2665]
 gi|281414079|ref|ZP_06245821.1| signal recognition particle protein [Micrococcus luteus NCTC 2665]
 gi|239838638|gb|ACS30435.1| signal recognition particle subunit FFH/SRP54 (srp54) [Micrococcus
           luteus NCTC 2665]
          Length = 528

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 143/313 (45%), Gaps = 25/313 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +    RL +   +    E+   L+ +D+ V V ++ + ++  +  +
Sbjct: 2   FNSLSDRLTATFRSLKGKGRLSEADIDATAREIRRALLDADVAVPVVRQFIAQIKERALS 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V+E +  +L   ++      +    VI++VG+ G GKTT+ GKL
Sbjct: 62  AEVAQALNPGQQVVKIVNEELVGILGGETRRIQHAKTGT-TVIMLVGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---------GSDAAALA 182
           +  +   G   +L A D  R  A+ QL++  +R                     D   +A
Sbjct: 121 AHLLKSQGHTPLLVACDLQRPNAVKQLQVGGERAGVPVYAPHPGVSSEFEAATGDPVQVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +   +A  K  DV+IIDTAGRL  ++ LM     +   +       P  VL V+DA  G
Sbjct: 181 RDGVAEANTKYHDVVIIDTAGRLGVDAELMQQAADIRAAVD------PDEVLFVIDAMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+   + F+   G TG+++TK+DG ARGG  + +      P+ F   GEG+ D E F 
Sbjct: 235 QDAVATAQAFNEGVGFTGVVLTKLDGDARGGAALSVRHVTGKPIMFASTGEGLKDFEVFH 294

Query: 303 AKDFSAVITGCLD 315
               ++ I    D
Sbjct: 295 PDRMASRILDMGD 307


>gi|15966993|ref|NP_387346.1| signal recognition particle protein [Sinorhizobium meliloti 1021]
 gi|307302461|ref|ZP_07582218.1| signal recognition particle protein [Sinorhizobium meliloti BL225C]
 gi|307316209|ref|ZP_07595653.1| signal recognition particle protein [Sinorhizobium meliloti AK83]
 gi|15076266|emb|CAC47819.1| Probable signal recognition particle protein (fifty-four homolog)
           [Sinorhizobium meliloti 1021]
 gi|306898049|gb|EFN28791.1| signal recognition particle protein [Sinorhizobium meliloti AK83]
 gi|306903131|gb|EFN33721.1| signal recognition particle protein [Sinorhizobium meliloti BL225C]
          Length = 513

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   +  +     L +        E+   L+ +D+ + V +   E++  K   
Sbjct: 2   FESLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTEKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + +  ML       + + +  P VI++VG+ G GKTT  GK+
Sbjct: 62  AEIVKSIKPGQMVVKIVHDELIAMLGSEGVTIDLNAAA-PVVIMMVGLQGSGKTTTTGKI 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+++     KV++A+ DT R AA +QL+    +T  D +    G     +A  A + A+
Sbjct: 121 AKRLTARDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPVIAGQSPTDIAARAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGR H +  LM  + ++ R         PH +L V DA TGQ+A+    
Sbjct: 181 LGGHDIVILDTAGRTHIDEPLMIEMAEIKR------KSNPHEILLVADALTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +GVGE +++LE F  +  +  I
Sbjct: 235 NFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMDELEEFHPRRVADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|312278746|gb|ADQ63403.1| Signal recognition particle-docking protein FtsY [Streptococcus
           thermophilus ND03]
          Length = 463

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 170/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       + +  ++ RR+D+   E+LE++LI SD+GV VA ++ E+L  +
Sbjct: 160 EKYNRTLKKTRTGFAARLNEFFANFRRVDEEFFEQLEEILILSDVGVNVATQLTEDLRYE 219

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++V     L    + +L+             +F     VIL VGVNGVGKTT IGKL
Sbjct: 220 ARLENVKKTEDLQRLIIEKLVDIYEKDDVYEEQINFQDGLTVILFVGVNGVGKTTSIGKL 279

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G  VML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 280 ANKYKQEGKNVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGAEKADPASVVFDGMEKALA 339

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 340 EGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLALDASTGQNALNQAKE 399

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGL++TK+DG+A+GG ++ I     IPV  +G GE I+D+  F +++F   + 
Sbjct: 400 FSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKIDDIGEFHSEEFMQSLL 459


>gi|158320494|ref|YP_001513001.1| signal recognition particle-docking protein FtsY [Alkaliphilus
           oremlandii OhILAs]
 gi|158140693|gb|ABW19005.1| signal recognition particle-docking protein FtsY [Alkaliphilus
           oremlandii OhILAs]
          Length = 431

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 130/307 (42%), Positives = 189/307 (61%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
               +   +L +G   T   + + +  ++ S +++D+ + EELE++LI SD+GV    +I
Sbjct: 124 KPKFNLFSRLKEGLLKTKSGITDRVDHLLKSYKKIDEDLFEELEEILITSDMGVQTTMEI 183

Query: 67  VEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           VE+L  +   + +S    +  +  + I ++L  L      +    P +ILVVGVNGVGKT
Sbjct: 184 VEDLKERVRKEKISDPLEVKQLLMDKITEILEELPDS-KINIEPSPAIILVVGVNGVGKT 242

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGK++ +    G KV+LAAGDTFR+AAIDQLKIW DR   D +  +  SD AA+ Y+A
Sbjct: 243 TSIGKMAYRFKSEGKKVLLAAGDTFRAAAIDQLKIWGDRVGVDVIRHQEESDPAAVIYDA 302

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A+  DVLI DTAGRLHN   LM  +GK+ +V+ R   +A   VL VLDATTGQNA
Sbjct: 303 IQAAKARNTDVLICDTAGRLHNKKNLMNELGKIFKVVDREYENASKEVLLVLDATTGQNA 362

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           ++Q + F  VA  +GLI+TK+DGTA+GG ++ I     +PV  +GVGE + DL+ F  + 
Sbjct: 363 VQQAKTFKEVANISGLILTKLDGTAKGGVIVGISRELNVPVKLIGVGEKMEDLQEFNPQS 422

Query: 306 FSAVITG 312
           F   I G
Sbjct: 423 FVKAIFG 429


>gi|254467983|ref|ZP_05081389.1| signal recognition particle protein [beta proteobacterium KB13]
 gi|207086793|gb|EDZ64076.1| signal recognition particle protein [beta proteobacterium KB13]
          Length = 451

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
             + + KL+  +  I      +   + D +RE +   LI +D+ + V +  ++++  K  
Sbjct: 2   LENLTDKLQSVVRKISGQSRFTEENISDAMRE-VRIALIEADVAIPVVKFFIDQVKEKAI 60

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V         ++  V + +  ++ P + P N +    P VIL+ G+ G GKTT   K
Sbjct: 61  GTEVLKTVSPGDAIVKIVQDELTNLMGPENVPLNLE-KKPPSVILMAGLQGSGKTTTSAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K + +   KVML + D +R AAIDQLK  A     +   S        +A ++   A+
Sbjct: 120 LAKLLKEQKKKVMLVSADVYRPAAIDQLKTLAASIDVECYDSTEKDKPIKIAEKSIDYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I DTAGR   +  +M  I  + +VLK          L V+D+  GQ+A+    
Sbjct: 180 KHFFDVVIFDTAGRTAIDEKMMKEIQALHKVLKPA------ETLFVVDSMQGQDAINTAS 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG +RGG  +        P+ F+GV E IN +EPF     +A I
Sbjct: 234 AFNDALELTGIVLTKIDGDSRGGAALSAKHIIGKPIKFVGVNEKINGIEPFYPDRLAARI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|138894715|ref|YP_001125168.1| Signal recognition particle-docking protein FtsY [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247666|ref|ZP_03146368.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           G11MC16]
 gi|134266228|gb|ABO66423.1| Signal recognition particle-docking protein FtsY [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212450|gb|EDY07207.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           G11MC16]
          Length = 329

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 128/320 (40%), Positives = 194/320 (60%), Gaps = 7/320 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K   ++ +   K  +G + T   L   + D+I+  R++D+   EELE++LI +D+GV 
Sbjct: 8   KEKWTKQADAVTEKFREGLSKTRDSLAGKVNDLIARYRKVDEEFFEELEEILIAADVGVT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF----SHRPHVILV 116
              ++V+EL  +   +++     + DV +E +  +    +           ++   VIL 
Sbjct: 68  TVMELVDELKMEVKRRNIQDSAQMRDVIAEKLIDIYRAGADDSELSALNIQTNGLTVILF 127

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ K+   G  V+LAAGDTFR+ AI+QL++W +R   D +    GS
Sbjct: 128 VGVNGVGKTTTIGKLAHKLKSEGKSVLLAAGDTFRAGAIEQLEVWGERVGVDVIKQTAGS 187

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV+ R  P APH VL V
Sbjct: 188 DPAAVMYDAIQAAKARGVDVLLCDTAGRLQNKVNLMKELEKVKRVISREIPGAPHEVLLV 247

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q ++F      TG+++TK+DGTA+GG ++ I     IPV F+G+GE ++
Sbjct: 248 LDATTGQNAMSQAKLFKEATDVTGIVLTKLDGTAKGGIVLAIRNELAIPVKFVGLGEKMD 307

Query: 297 DLEPFVAKDFSAVIT-GCLD 315
           DL+PF A+ +   +  G  D
Sbjct: 308 DLQPFDAEKYVYGLFAGLFD 327


>gi|269124183|ref|YP_003306760.1| signal recognition particle protein [Streptobacillus moniliformis
           DSM 12112]
 gi|268315509|gb|ACZ01883.1| signal recognition particle protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 443

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+E    +    ++ +        E+   L+ +D+  +V +  V+ +  K   
Sbjct: 2   FKGLSDKLQETFKKLSGQSKITESNITEALREVRLALLEADVNYSVVKNFVKRIKEKAQG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  +++ + ++L   +   N   S +P +I++VG+ G GKTT  GKL
Sbjct: 62  QEVIKGVNPRQQFIKIINDELIEVLGGQNTSLNKSTS-KPTIIMLVGLQGAGKTTFAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K  L   D +R AA  QL + A++    F   E  ++   +      +A+ 
Sbjct: 121 AKFLKKEKSKAFLIGADVYRPAAKKQLMVLANQIGVPFFSIEDSNNVLEIVNNGLLEAKK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D ++IDTAGRLH +  LM  +  +   +       P  +L V+D  TGQ+A+   + 
Sbjct: 181 EDADYVLIDTAGRLHVDEALMQELQDVKSSVN------PTEILLVVDGMTGQDAVNVAKT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ V   TG+++TK+DG  RGG  + I      P+ ++  GE ++D+  F  +  ++ I 
Sbjct: 235 FNDVLDITGVVVTKLDGDTRGGAALSIKEISGKPIKYISEGEKLDDIAVFHPERLASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|189501986|ref|YP_001957703.1| hypothetical protein Aasi_0573 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497427|gb|ACE05974.1| hypothetical protein Aasi_0573 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 311

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 122/300 (40%), Positives = 181/300 (60%), Gaps = 6/300 (2%)

Query: 15  RKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            KL K    T           ++    +DD + + LE+LL+ +DIG+    KI++ LL  
Sbjct: 13  EKLDKALTPTKTSFWNNFNKVLVGKSTVDDEILDRLEELLLTADIGIDTTLKIID-LLEM 71

Query: 74  RYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           R A+D  ++V  +   + E I  ++  L++      +  PH+IL+VG+NGVGKTT IGKL
Sbjct: 72  RVARDKYLNVAELESILREEIESLITILNQA--EQNTALPHIILIVGINGVGKTTTIGKL 129

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +     AG KV+L A DTFR+AAI+QLK+W +R     V   + +D +A+AY+  ++A  
Sbjct: 130 AALYKQAGKKVILGAADTFRAAAIEQLKMWGERVGVPVVAHSMHTDPSAVAYDTVQKAIQ 189

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ DV IIDTAGRLH    LM  + K+ R +++L P APH +L VLDATTGQNA  Q + 
Sbjct: 190 EQADVAIIDTAGRLHTKVNLMNELSKIRRTIEKLMPAAPHEILLVLDATTGQNAFIQTKA 249

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       GL++TK+DGTA+GG +I I+    +PV ++GVGE I+DL+ F  K+F   + 
Sbjct: 250 FTEATAVNGLVVTKLDGTAKGGVVIGIIDQFHVPVKYIGVGEQIDDLQLFDEKEFVETLF 309


>gi|86359537|ref|YP_471429.1| signal recognition particle GTP-binding protein [Rhizobium etli CFN
           42]
 gi|86283639|gb|ABC92702.1| signal recognition particle GTP-binding protein [Rhizobium etli CFN
           42]
          Length = 525

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FENLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       +   +  P V+++VG+ G GKTT   K+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELIEMLGGEGVGIDL-HAPAPVVVMMVGLQGSGKTTTTAKI 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + ++S     KV++A+ DT R AA +QL+    + S D +    G     +A  A + A+
Sbjct: 121 AHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQASIDTLPVITGQSPTDIAARAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGGHDVVILDTAGRTHIDEPLMVEMADIKKRSN------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +GVGE +++LE F  +  +  I
Sbjct: 235 NFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|284039605|ref|YP_003389535.1| signal recognition particle protein [Spirosoma linguale DSM 74]
 gi|283818898|gb|ADB40736.1| signal recognition particle protein [Spirosoma linguale DSM 74]
          Length = 439

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 143/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL + I  +    R+ +       +E+   L  +D+   VA+ I + +  K   
Sbjct: 2   FENLQDKLNKAIKTLKGQGRITEINVAATIKEVRRALTDADVNYKVAKDITDRIRDKALD 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q  +  V E + +++   ++  N      P +IL+ G+ G GKTT  GKL
Sbjct: 62  RKVLISVEPGQLFVKIVQEELTELMGGEAQNINIKGD--PAIILIAGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G  V+L A D +R AAIDQLK+  ++   +        +A  +A  A   A+ 
Sbjct: 120 ASYLKKQGRNVLLVAADIYRPAAIDQLKVLGEQVGVEVYAEPENKNAVQIAQNAIALARK 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
               ++I+DTAGRL  +  +M  I  + R +      AP   L V+D+ TGQ+A+   + 
Sbjct: 180 TGKKIVIVDTAGRLAVDEAMMQEIEALKRAI------APSETLFVVDSMTGQDAVNTAKT 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG ARGG  + I      P+ F+  GE +  L+ F     ++ I 
Sbjct: 234 FNERLNFDGVVLTKLDGDARGGAALSIKTVVNKPIKFISTGEKMEALDVFYPDRMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|298530728|ref|ZP_07018130.1| signal recognition particle protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510102|gb|EFI34006.1| signal recognition particle protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 465

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +    RLD+        E+   L+ +D+   V +   + +  +   
Sbjct: 2   FDSLSERLNSVFKKLKGHGRLDEQNIQAGMREVRLALLEADVNYKVVKDFTQRVKERALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V E + ++L    +  +   +  P VI++VG+ G GKTT  GKL
Sbjct: 62  QEVLKSLTPGQQVVKIVKEELEELLGGEQQGLDLK-AKPPVVIMMVGLQGSGKTTSAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +        L   D +R AAIDQL   A   +     S    +   +   A ++A+ 
Sbjct: 121 ALHLKGLKYSPYLVPADVYRPAAIDQLHKLAGDLNMPAYPSTSSDNPVDICMRALEEARQ 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K    +I DTAGRLH +  LM  +  +           PH +L V DA TGQ+A+   + 
Sbjct: 181 KAYTAVIFDTAGRLHIDETLMQELVSIKEKCS------PHEILFVADAMTGQDAVTVAQR 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ +   TG+++TKM+G ARGG  + I      P+ F+G GE + DLE F     ++ I 
Sbjct: 235 FNDLLDITGVVLTKMEGDARGGAALSIKSITNKPIKFVGTGEKLTDLEVFHPDRVASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|225010553|ref|ZP_03701024.1| signal recognition particle protein [Flavobacteria bacterium
           MS024-3C]
 gi|225005382|gb|EEG43333.1| signal recognition particle protein [Flavobacteria bacterium
           MS024-3C]
          Length = 445

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL + +  +    ++ +       +E+   L+ +D+   +A+     +  K   
Sbjct: 2   FDNLSDKLDKALHVLKGHGQITEINVAETLKEVRRALLDADVNFKIAKDFTNTVREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V + + +++   S   N   +  P +IL+ G+ G GKTT  GKL
Sbjct: 62  QQVLTSLQPGQLMVKLVKDELTQLMGGESVGLNL--ADNPSIILMAGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +        +L A D +R AAIDQL++  D+       ++  S+  A+A      A+
Sbjct: 120 ALYLKSKKSKNPLLVACDVYRPAAIDQLQVVGDQIGVAVYSNKEESNPVAIAQAGIAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   +++IIDTAGRL  +  +MA I  + + +       P   L V+DA TGQ+A+   +
Sbjct: 180 ANGHNLVIIDTAGRLAVDEAMMAEIANIHKAIT------PSETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH V    G+I+TK+DG  RGG  I I      P+ F+G GE +  L+ F  +  +  I
Sbjct: 234 AFHDVLNFDGVILTKLDGDTRGGAAISIKSVVTKPIKFIGTGEKMEALDVFYPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|152976213|ref|YP_001375730.1| signal recognition particle-docking protein FtsY [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152024965|gb|ABS22735.1| signal recognition particle-docking protein FtsY [Bacillus
           cytotoxicus NVH 391-98]
          Length = 329

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 118/321 (36%), Positives = 192/321 (59%), Gaps = 4/321 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K++ ++ +   K  +G   T     + + D++   R++D+   EELE++LI +D+GV 
Sbjct: 8   KEKISKQTDTVTEKFKQGLEKTRNSFADKVNDLVYRYRKVDEDFFEELEEILISADVGVT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVG 118
              +++++L  +   +++   + +  V       +    + F+ + +    +  VIL VG
Sbjct: 68  TVMELIDQLKDEVKRRNIQDPKEVQAVISEKLIDIYKGEEGFSNEINMQQDQLTVILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W +R   + +    GSD 
Sbjct: 128 VNGVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGNRVGVEVIKQGSGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+D
Sbjct: 188 AAVMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVLLVID 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL
Sbjct: 248 ATTGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDL 307

Query: 299 EPFVAKDFSAVITGCLDYGEE 319
           + F  + +   +   L   +E
Sbjct: 308 QQFQPEQYVYGLFANLVEKDE 328


>gi|239946696|ref|ZP_04698449.1| signal recognition particle-docking protein FtsY [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239920972|gb|EER20996.1| signal recognition particle-docking protein FtsY [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 303

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 131/303 (43%), Positives = 191/303 (63%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD    EELE+LLI SD+ V+V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVSVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   ++EL+ + L     PF  D +++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKDALAELVEQQLSKSEIPFTLD-ANKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AA++QL  W DR +A  +  E  +D A++AY A +++ 
Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWVDRANALLITGEESADPASVAYRAMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+DA TGQN   QVE
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSILVIDAITGQNTYNQVE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TGLI+TK+DG+A+ G L+ +V    +PVYF+G+GE I DL+ F   DF+  +
Sbjct: 241 HFNDATNLTGLIVTKLDGSAKAGVLVGVVQKFNLPVYFIGIGEKIEDLKKFNRHDFAKSL 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|163757330|ref|ZP_02164419.1| hypothetical protein HPDFL43_18007 [Hoeflea phototrophica DFL-43]
 gi|162284832|gb|EDQ35114.1| hypothetical protein HPDFL43_18007 [Hoeflea phototrophica DFL-43]
          Length = 542

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   + ++     L D        E+   L+ +D+ + V +   + +  K   
Sbjct: 15  FENLQDRLGSILNNLTGRGALSDKDVSEAMREVRRALLEADVALEVVRGFTDRVREKAVG 74

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + +  +L       + + +  P VI++VG+ G GKTT   K+
Sbjct: 75  AEIVKSIKPGQMVVKLVHDELVALLGEEGVAIDLNAAA-PVVIMMVGLQGSGKTTTSAKI 133

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + ++      KV++A+ DT R AA +QL+   ++T    +    G     +A  A + A+
Sbjct: 134 AARLEKRDRKKVLMASLDTRRPAAQEQLRQLGEQTGVATLPIIAGQSPTDIAARAVQAAK 193

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LMA + ++ R         PH +L V DA TGQ+A+    
Sbjct: 194 LGGHDVVILDTAGRTHIDEPLMAEMAEIKRRAN------PHEILLVADALTGQDAVNLAR 247

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +GL++T+MDG  RGG  + +      P+  +G GE ++ LE F  +  +  I
Sbjct: 248 NFDERVGISGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGTGEKMDALEEFHPRRVADRI 307

Query: 311 TGCLD 315
            G  D
Sbjct: 308 LGMGD 312


>gi|51473943|ref|YP_067700.1| cell division protein FtsY [Rickettsia typhi str. Wilmington]
 gi|81389950|sp|Q68VX4|FTSY_RICTY RecName: Full=Cell division protein ftsY homolog
 gi|51460255|gb|AAU04218.1| cell division protein FtsY [Rickettsia typhi str. Wilmington]
          Length = 303

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 187/303 (61%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           ++   KL +  + TS  +  GI  I   ++LD     ELE+LLI SDI + V   I+E+ 
Sbjct: 2   ITIFNKLKQSLSKTSNTISTGIDKIFYKKKLDQTTLNELEELLISSDISITVVTHIIEKF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K +    V   +++LI + L     PF     ++ ++IL+ GVNGVGKTT IGK
Sbjct: 62  KNVKFDKTIDSDTVKEAIAKLIEQQLSKSEIPFTLS-ENKLNIILICGVNGVGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS   S  G KV +AA DTFR+AAI+QL  W DR +A  +  E+ +D A++AY A +++ 
Sbjct: 121 LSALYSAQGKKVAVAACDTFRAAAINQLSSWVDRANALLITGEVSADPASVAYRAIQESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D+L IDTAGRLHNN  LM  + K+++V+K+LD +AP   + ++DA TGQN   Q+E
Sbjct: 181 KQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSILIIDAVTGQNTYNQIE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V   TGLI+TK+DG+A+ G L+  V    +P+YF+G+GE I DL+ F   DFS  +
Sbjct: 241 YFNDVTNLTGLIITKLDGSAKAGVLVGAVQKFNLPIYFIGIGEQIEDLKIFNRHDFSRSL 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|304415130|ref|ZP_07395856.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Candidatus Regiella insecticola LSR1]
 gi|304283012|gb|EFL91449.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Candidatus Regiella insecticola LSR1]
          Length = 453

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  I    RL +        E+   L+ +D+ + V    +  +  +   
Sbjct: 2   FDNLTDRLSRTLRHISGRGRLTEDNIKNTLREIRIALLEADVALPVVNDFINLIKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q ++  V + +   +  ++   N   +  P VIL+ G+ GVGKTT + KL
Sbjct: 62  REVNKSLTPGQELVKIVKDELTSAMGKVNSELNL-ATQPPAVILMAGLQGVGKTTSVAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K + + + D +R AAI QL+  A     DF  S +      +   A + A+
Sbjct: 121 GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAQGVGIDFFASNLHQKPIDIVNLALETAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDETMMDEIKQLHSAIN------PVETLFVVDAMTGQDAANIAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLGVGE    LE F     ++ I
Sbjct: 235 SFNDALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKSEALEAFHPDRVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|260887878|ref|ZP_05899141.1| signal recognition particle-docking protein FtsY [Selenomonas
           sputigena ATCC 35185]
 gi|330838743|ref|YP_004413323.1| signal recognition particle-docking protein FtsY [Selenomonas
           sputigena ATCC 35185]
 gi|260862384|gb|EEX76884.1| signal recognition particle-docking protein FtsY [Selenomonas
           sputigena ATCC 35185]
 gi|329746507|gb|AEB99863.1| signal recognition particle-docking protein FtsY [Selenomonas
           sputigena ATCC 35185]
          Length = 307

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 139/305 (45%), Positives = 194/305 (63%), Gaps = 3/305 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L KG A T       I   II    +DD + +ELE+ LI SD+GV   ++++ +
Sbjct: 1   MGFFDRLKKGLAKTRETFTNKIEKLIIGYADIDDDLLDELEETLIMSDVGVKTTERLMAD 60

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +      KD++    L   ++E I ++L   S       S  P V+LV+GVNGVGKTT I
Sbjct: 61  VRKGIKKKDINTPEDLKPFLAEKISEILSTGSDETRI-ASAGPTVLLVIGVNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+    + G  VMLAA DTFR+AAIDQL+IW DRT    +  E GSD AA+A++A K 
Sbjct: 120 GKLAAYYKEQGKSVMLAAADTFRAAAIDQLQIWGDRTGVPVIRHEEGSDPAAVAFDAVKA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVLIIDTAGRLH  S LM  + K+ RV++R    APH  L VLDATTGQNA+ Q
Sbjct: 180 ARARSIDVLIIDTAGRLHTKSNLMEELKKINRVIQREIAEAPHETLLVLDATTGQNAISQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F   A  TG+++TK+DGTA+GG +I +     +PV ++GVGEG++DL PF+AKDF+ 
Sbjct: 240 ADLFQKAAAITGIVLTKLDGTAKGGVIIGLKSELSMPVKWIGVGEGVDDLRPFIAKDFAR 299

Query: 309 VITGC 313
            + G 
Sbjct: 300 ALFGL 304


>gi|134294678|ref|YP_001118413.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           vietnamiensis G4]
 gi|134137835|gb|ABO53578.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           vietnamiensis G4]
          Length = 455

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++    +    + +     P VIL+ G+ G GKTT +
Sbjct: 62  EEVISSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVTPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADFFPSTPDQKPVDIALAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRL  +  +M  I  +  VLK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGVLKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|290476252|ref|YP_003469152.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Xenorhabdus bovienii
           SS-2004]
 gi|289175585|emb|CBJ82388.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA [Xenorhabdus bovienii
           SS-2004]
          Length = 453

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRIKENAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   + K +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVQNELVKAMGEVNSELNLS-AQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K +L    D +R AAI QL+  ++    DF  S+       +A +A + A+
Sbjct: 121 GKLLKEKNKKKVLVVSVDVYRPAAIKQLETLSEAVDIDFFPSDPQEKPVDIANKAIQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKAVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|157964925|ref|YP_001499749.1| Signal recognition particle-docking protein FtsY [Rickettsia
           massiliae MTU5]
 gi|157844701|gb|ABV85202.1| Signal recognition particle-docking protein FtsY [Rickettsia
           massiliae MTU5]
          Length = 303

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 130/303 (42%), Positives = 190/303 (62%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD    EELE+LLI SD+ V+V   I+EEL
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVSVVTNIIEEL 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L     PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDNHTVKEALAKLIEQQLSKSEIPFTLS-KNKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AAI+QL  WADR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAINQLSTWADRANALLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+DA TGQN   QVE
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVIDAITGQNTYNQVE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  +
Sbjct: 241 HFNDATNLTGLIVTKLDGSAKAGVIVRVVQKFNLPLYFIGIGEKIEDLKIFNRHDFARNL 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|330815473|ref|YP_004359178.1| Signal recognition particle protein [Burkholderia gladioli BSR3]
 gi|327367866|gb|AEA59222.1| Signal recognition particle protein [Burkholderia gladioli BSR3]
          Length = 455

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMAHVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++    +    + +     P VIL+ G+ G GKTT +
Sbjct: 62  EEVLGSLSPGQALVAVVQKELTAVIGGDYEGKAAELNLAVTPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + D    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLRDKQKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFASTPDQKPVEIARAALD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRL  +  +M  I ++   +           L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLIVDTAGRLGIDEAMMKEIAELHAAINPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|67924644|ref|ZP_00518055.1| Signal recognition particle protein [Crocosphaera watsonii WH 8501]
 gi|67853517|gb|EAM48865.1| Signal recognition particle protein [Crocosphaera watsonii WH 8501]
          Length = 488

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++    +    ++ +       +E+   L+ +D+ + V +  + E+      
Sbjct: 2   FDALADRLEDAWKKLRGQDKITEANMQDALKEVRRALLEADVNLQVVKTFIAEVEKAAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+++  V + + K++   + P        P VIL+ G+ G GKTT   KL
Sbjct: 62  AEVIAGVNPGQQLIKIVYDELVKVMGESNVPL-AQAEKSPTVILMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S  +       ++ A D +R AAIDQLK   ++           ++   +A +   +A+ 
Sbjct: 121 SLYLRKQERTCLMVATDIYRPAAIDQLKTLGEQIEVPVFELGTQANPVDIATQGVAKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +D +IIDTAGRL  +  +M  + ++ + +       P   L V+DA TGQ A      
Sbjct: 181 MGIDTVIIDTAGRLQIDEEMMLELARVKKAVN------PDDTLLVVDAMTGQEAANLTRT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TKMDG  RGG  + +      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FHEQIGVTGAILTKMDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRMASRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 SMGD 298


>gi|29829190|ref|NP_823824.1| signal recognition particle [Streptomyces avermitilis MA-4680]
 gi|29606296|dbj|BAC70359.1| putative signal recognition particle, subunit SRP54 [Streptomyces
           avermitilis MA-4680]
          Length = 516

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 149/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FDTLSDRLSATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRTFIKNVKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+VL  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  SEVSKALNPAQQVLKIVNEELVTILGGETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            K + D G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 121 GKHLKDQGHSPILVAADLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  D++I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 AKTKVHDIVIVDTAGRLGIDQELMQQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I      P+ F   GE ++D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIASVTGKPIMFASNGEKLDDFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|238026162|ref|YP_002910393.1| Signal recognition particle protein [Burkholderia glumae BGR1]
 gi|237875356|gb|ACR27689.1| Signal recognition particle protein [Burkholderia glumae BGR1]
          Length = 455

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 146/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++    +    + +     P +IL+ G+ G GKTT +
Sbjct: 62  EEVISSLSPGQALVGVVQKELTAVIGGDYEGKAVELNLAVTPPAIILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K +      KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKQKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFPSTPEQKPVEIARAALD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRL  +  +M  I ++   +           L V+DA  GQ+A+ 
Sbjct: 182 WARRHYHDVLIVDTAGRLGIDEAMMKEIAELHAAINPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDALPLTGVVLTKLDGDSRGGAALSVRSITGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|312869989|ref|ZP_07730128.1| signal recognition particle-docking protein FtsY [Lactobacillus
           oris PB013-T2-3]
 gi|311094574|gb|EFQ52879.1| signal recognition particle-docking protein FtsY [Lactobacillus
           oris PB013-T2-3]
          Length = 461

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 117/298 (39%), Positives = 175/298 (58%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +G   +       +   +++ R +D+   ++LED+LI SD+G  +A K+ + L  +
Sbjct: 153 EKYDRGLEKSRTGFGARLNRFLANFRHVDEDFFDDLEDMLIESDVGYDMAMKLSDSLREE 212

Query: 74  RYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIG 129
              ++   ++ + +V  E +  +     +  N D    +  P VI+ VGVNG GKTT IG
Sbjct: 213 VKLENAKSKQEVSNVIIEKMVDLYEEAGQGENPDLRMAAEGPTVIMFVGVNGAGKTTTIG 272

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++      G KV+LAA DTFR+ A +QL +WA R   D V      D AA+ ++A ++A
Sbjct: 273 KMAALFKRQGKKVLLAAADTFRAGATEQLDVWAQRDGVDIVTGPENGDPAAVVFDAVQKA 332

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DVL +DTAGRL N   LM  + KM R+L R  P APH VL VLDATTGQNAL QV
Sbjct: 333 KREDYDVLFVDTAGRLQNKVNLMNELAKMKRILTREIPDAPHEVLLVLDATTGQNALNQV 392

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           ++F      TG+++TK+DGTARGG ++ I     +PV ++G+GE ++DL+ F A DF 
Sbjct: 393 KLFKQSTDVTGIVLTKLDGTARGGIVLAIRNELHLPVKYVGLGEKVDDLQKFNASDFV 450


>gi|269119246|ref|YP_003307423.1| signal recognition particle-docking protein FtsY [Sebaldella
           termitidis ATCC 33386]
 gi|268613124|gb|ACZ07492.1| signal recognition particle-docking protein FtsY [Sebaldella
           termitidis ATCC 33386]
          Length = 347

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 184/314 (58%), Gaps = 6/314 (1%)

Query: 3   NQKVASESLSWIRK----LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDI 58
           +++V+ ++  +  +    L +    T       + ++ + + +DD + EELEDLLI+SD+
Sbjct: 34  SEEVSKQAEEYTAEKPKPLKERLVKTKKGFFTKLKEVFTGKPIDDEMYEELEDLLIQSDL 93

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           G  +  +++EEL  +     V     +Y  + +++ + +   +   +     + ++ILVV
Sbjct: 94  GFDMTLRVIEELEERVKKAKVKDSEEVYEILKQILREKISSENSALDI-VDGKLNIILVV 152

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGK++ K+     KV++ A DTFR+AAI+QL+ W  RT  + +    GSD
Sbjct: 153 GVNGVGKTTSIGKIASKLKQKNKKVIIGAADTFRAAAIEQLEEWGKRTGVEVIKQSHGSD 212

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+ ++    A++KK DV IIDTAGRLHN S LM  + K+ +++ +         L V+
Sbjct: 213 PGAVVFDTISTARSKKYDVAIIDTAGRLHNKSDLMKELEKINKIIIQQSGEDNFEKLLVI 272

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+TTGQN L+Q ++F+ +   +G+I+TK DGTA+GG +  I    K P+ +LGVGEGI D
Sbjct: 273 DSTTGQNGLQQAKLFNEIVDLSGVILTKFDGTAKGGIIFAISDELKKPIKYLGVGEGIED 332

Query: 298 LEPFVAKDFSAVIT 311
           L  F A +F   I 
Sbjct: 333 LREFNADEFVNAIF 346


>gi|27262412|gb|AAN87487.1| signal recognition particle subunit Ffh/Srp54 [Heliobacillus
           mobilis]
          Length = 300

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 145/295 (49%), Gaps = 16/295 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + KL+  +  +    ++ +        E+   L+ +D+ + V +  V  +  +   
Sbjct: 9   FEGLAEKLQNTLKKLRGKGKVTEADVAEAMREVRMALLAADVNLKVVKDFVARVKERAIG 68

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V + + +++   +   N   S  P V+++VG+ G GKTT + KL
Sbjct: 69  QDVLESLTPGQQVVKVVHDELIQLMGGTTSKLNMS-SKPPTVVMLVGLQGAGKTTTVAKL 127

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              +   G + +L A D +R AA+ QL++  ++          G     +A  A + A A
Sbjct: 128 GLYLRKQGRRPLLVACDVYRPAAVKQLQVLGNQLDLPVFSMGTGVSPVDIARGATEYAVA 187

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV+++DTAGRLH N  LM  +  +   +K      PH ++ V+DA TGQ+A+   + 
Sbjct: 188 QGRDVILLDTAGRLHINEELMDELKSIKSTVK------PHEIMLVVDAMTGQDAVNVADS 241

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           FH   G  G+++TK+DG ARGG  + +      P+ F G+GE  + LEPF     
Sbjct: 242 FHKQLGLDGVVLTKLDGDARGGAALSVKAVTGCPIKFAGMGEKPDALEPFHTDRL 296


>gi|325860535|ref|ZP_08173639.1| signal recognition particle protein [Prevotella denticola CRIS
           18C-A]
 gi|325481920|gb|EGC84949.1| signal recognition particle protein [Prevotella denticola CRIS
           18C-A]
          Length = 456

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 142/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKSFTDTVKKKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  + + + +++   +   N    +RP +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIMHDELAELMGGEAVGLNL--VNRPTIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AAI+QLK+  ++                +A  A  +A+
Sbjct: 120 ANMLKTKEHKHPLLVACDVYRPAAIEQLKVVGEQVGVPVYSEPDNKTVNEIADHAIAEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+IIDTAGRL  +  +M  I  + + +       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGNDVVIIDTAGRLAVDEDMMNEIESLKKHVT------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFNGVVLTKLDGDTRGGAALSIRTVVTKPIKFIGTGEKMEAVDVFHPGRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|313901233|ref|ZP_07834721.1| signal recognition particle protein [Clostridium sp. HGF2]
 gi|312954191|gb|EFR35871.1| signal recognition particle protein [Clostridium sp. HGF2]
          Length = 470

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 142/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L +   +I    +L +     +  E+   L+ +D+   V +  +  +  +  
Sbjct: 2   AFESLSERLGKAFKNITGKGKLSEKNMNDMLREVRMSLLEADVNYGVVKDFIARVKEQAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q V+  V + I  +L     P N+  S    V ++VG+ G GKTT   K
Sbjct: 62  GTEVMTSLNPGQMVVKIVHDEIVALLGSEDAPVNYKSSGITTV-MMVGLQGTGKTTASAK 120

Query: 131 LSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++         K +L A D  R AAI+QLK   +    +     + + A   A ++   A
Sbjct: 121 IANVMKKKQSRKPLLVACDVIRPAAIEQLKTLGESIGVEVFSLGVETKALETAKQSMDYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++ DTAGRLH +  LM  +  +   +       P  +L  +DA TGQ+ +   
Sbjct: 181 KENGYDTVLFDTAGRLHIDEELMQELSDIKAFVH------PDDILLTVDAMTGQDIVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             FH     TGL++TK+DG +RGGG++ +    ++PV F+G+GE I+DL+ F     +  
Sbjct: 235 GSFHEQLEVTGLVLTKLDGDSRGGGILSVRSITQVPVKFVGLGEKIDDLDVFHPDRMADR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|320102219|ref|YP_004177810.1| signal recognition particle subunit FFH/SRP54 (srp54) [Isosphaera
           pallida ATCC 43644]
 gi|319749501|gb|ADV61261.1| signal recognition particle subunit FFH/SRP54 (srp54) [Isosphaera
           pallida ATCC 43644]
          Length = 495

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L K  +    + +  +  +++ + + DG+RE +   L+ +D+ + V Q  + ++  
Sbjct: 1   MFDDLQKRLSGAFGRFR--VRGVLTEQNIQDGLRE-VRTALLEADVNLNVVQDFIAKVKQ 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +   + +       Q+++  V + +  ++        ++ +  P ++++ G+ G GKTT 
Sbjct: 58  RAVGEQIIKSIRPDQQIVKIVHDELVALMGETDATIRFEKTG-PTILMLCGLQGSGKTTT 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL++ ++  G K ML A D  R AA++QLK    + +      E G     +      
Sbjct: 117 CGKLARMLALQGRKPMLVAADLQRPAAVEQLKTLGQQLAIPVHA-ETGVGPVQVCQNGVA 175

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A     D +I+DTAGRLH +  LM  +  + + +K      PH V  V DA TGQ+A+ 
Sbjct: 176 AAAKAGCDTVILDTAGRLHIDDELMEELKTIEKKVK------PHHVFFVCDAMTGQDAVA 229

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+      G+I+TK+DG ARGG  + I     +P+ F+G+GE ++ L PF  +  +
Sbjct: 230 SAKAFNEALELDGVILTKLDGDARGGAALSIRQVTGVPIKFMGIGEKLDKLSPFDPRRIA 289

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 290 GSILGMGD 297


>gi|154249332|ref|YP_001410157.1| signal recognition particle protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153268|gb|ABS60500.1| signal recognition particle protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 434

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F     KL      +    ++ +   EE    ++  L+ +D+   V ++ VE +  +   
Sbjct: 2   FEGLRDKLSNAFKVLSGKGKITERNIEEAIQIVKTALLAADVNYKVVKEFVENVKKRALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  + + + K+L        +   HRP  I++VG+ G GKTT   K+
Sbjct: 62  EEVLKSLTPDQMFVKIIRDELIKLLGERE---PFKLIHRPAYIMMVGLQGTGKTTSAAKI 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A DT+R AAIDQL+    +     +  +   +A  +  EA KQ + 
Sbjct: 119 ANYLKKQGKNPILVAADTYRPAAIDQLETLGKKIGVPVITGD-RKNALKIVEEAKKQVKD 177

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRLH +  +M  + ++  ++       P  +L  +DA  GQ+A+   + 
Sbjct: 178 SGHDVVILDTAGRLHIDDEMMQELEQIKEMVN------PDEILLTVDAMAGQDAVNSGKT 231

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG ++TK+DG +RGG ++ I      PV F+GVGE I+D + F     ++ I 
Sbjct: 232 FNDRLNVTGFVITKLDGDSRGGVILTIRYITGKPVKFVGVGEKIDDFDEFYPDRIASRIL 291

Query: 312 GCLDY 316
           G  D 
Sbjct: 292 GLGDM 296


>gi|323489556|ref|ZP_08094783.1| cell division protein ftsY-like protein [Planococcus donghaensis
           MPA1U2]
 gi|323396687|gb|EGA89506.1| cell division protein ftsY-like protein [Planococcus donghaensis
           MPA1U2]
          Length = 338

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 128/315 (40%), Positives = 191/315 (60%), Gaps = 3/315 (0%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E+     K  +G A T +     I D+++  R++D+   EELE++L+++D+G     +++
Sbjct: 16  EAEESTEKYKEGLAKTRIGFTSKINDLVAKYRKVDEDFFEELEEILLQADVGFETVIELM 75

Query: 68  EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKT 125
           ++L  +   K+V     +  V SE + ++        N  +F     VIL+VGVNGVGKT
Sbjct: 76  DDLRFEVQRKNVKDTSNVQSVISEKLVEIYEAGEAEINEINFVEGLTVILMVGVNGVGKT 135

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ +  + G  VMLAAGDTFR+ AI+QL +W  R   D +    GSD AA+ Y+A
Sbjct: 136 TTIGKLAHRFKNEGKTVMLAAGDTFRAGAIEQLDVWGKRVGVDVIKQSEGSDPAAVMYDA 195

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+++ VDVLI DTAGRL N   LM  + K+ RV+ R  P APH VL  LDATTGQNA
Sbjct: 196 VRSAKSRGVDVLICDTAGRLQNKVNLMNELQKVHRVISREIPGAPHEVLLALDATTGQNA 255

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F  V   TG+++TK+DGTA+GG ++ I    KIPV F+G+GE ++DL+PF A+ 
Sbjct: 256 MLQAQTFKEVTDVTGIVLTKLDGTAKGGIVLAIRNKLKIPVKFVGLGEKMDDLQPFDAQK 315

Query: 306 FSAVITGCLDYGEEK 320
           +   +       E++
Sbjct: 316 YVYGLFAEGLDKEQQ 330


>gi|332751432|gb|EGJ81835.1| signal recognition particle-docking protein FtsY [Shigella flexneri
           2747-71]
          Length = 262

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 114/261 (43%), Positives = 168/261 (64%), Gaps = 2/261 (0%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+GV   +KI+  L      K +     LY  + E + ++L  + +P N +    P VI
Sbjct: 3   ADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-DKTPFVI 61

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+VGVNGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    
Sbjct: 62  LMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT 121

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D+A++ ++A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+
Sbjct: 122 GADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVM 181

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
             +DA+TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE 
Sbjct: 182 LTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGER 241

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           I DL PF A DF   +    D
Sbjct: 242 IEDLRPFKADDFIEALFARED 262


>gi|258647132|ref|ZP_05734601.1| signal recognition particle protein [Prevotella tannerae ATCC
           51259]
 gi|260853095|gb|EEX72964.1| signal recognition particle protein [Prevotella tannerae ATCC
           51259]
          Length = 452

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    R+ +       +++   L+ +D+   VA+   +++  K   
Sbjct: 2   FDNLSERLERSFKILKGEGRITEINVAETLKDVRRALLDADVNYKVAKSFTDDVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V + + +++   +  FN +    P V+L+ G+ G GKTT+ GKL
Sbjct: 62  QHVLTAVKPGQLLVKIVHDELARLMGGTAADFNIE--GHPAVVLMSGLQGSGKTTMSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  M     +  L  A D +R AAIDQL    ++            D  ++A  A K+A+
Sbjct: 120 ALMMKTKKRRRPLLVACDVYRPAAIDQLHTLGEQIDVPVYSERDNQDPVSIALNAIKEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  +   +       P+  L V+D+ TGQ+A+   +
Sbjct: 180 AKSYDLVIVDTAGRLAIDEKMMTEIATIKEHI------RPNETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  L+ F  +  +  I
Sbjct: 234 EFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVNKPIKFIGTGEKLEALDIFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|53720604|ref|YP_109590.1| signal recognition particle protein [Burkholderia pseudomallei
           K96243]
 gi|53726090|ref|YP_104060.1| signal recognition particle protein [Burkholderia mallei ATCC
           23344]
 gi|67643598|ref|ZP_00442343.1| signal recognition particle protein [Burkholderia mallei GB8 horse
           4]
 gi|121599191|ref|YP_991786.1| signal recognition particle protein [Burkholderia mallei SAVP1]
 gi|124385462|ref|YP_001027279.1| signal recognition particle protein [Burkholderia mallei NCTC
           10229]
 gi|126441162|ref|YP_001060490.1| signal recognition particle protein [Burkholderia pseudomallei 668]
 gi|126448256|ref|YP_001082784.1| signal recognition particle protein [Burkholderia mallei NCTC
           10247]
 gi|126451954|ref|YP_001067754.1| signal recognition particle protein [Burkholderia pseudomallei
           1106a]
 gi|166998599|ref|ZP_02264457.1| signal recognition particle protein [Burkholderia mallei PRL-20]
 gi|167721305|ref|ZP_02404541.1| signal recognition particle protein [Burkholderia pseudomallei
           DM98]
 gi|167847381|ref|ZP_02472889.1| signal recognition particle protein [Burkholderia pseudomallei
           B7210]
 gi|167904353|ref|ZP_02491558.1| signal recognition particle protein [Burkholderia pseudomallei NCTC
           13177]
 gi|242317275|ref|ZP_04816291.1| signal recognition particle protein [Burkholderia pseudomallei
           1106b]
 gi|254178959|ref|ZP_04885613.1| signal recognition particle protein [Burkholderia mallei ATCC
           10399]
 gi|254202780|ref|ZP_04909143.1| signal recognition particle protein [Burkholderia mallei FMH]
 gi|254208122|ref|ZP_04914472.1| signal recognition particle protein [Burkholderia mallei JHU]
 gi|52211018|emb|CAH37006.1| signal recognition particle protein [Burkholderia pseudomallei
           K96243]
 gi|52429513|gb|AAU50106.1| signal recognition particle protein [Burkholderia mallei ATCC
           23344]
 gi|121228001|gb|ABM50519.1| signal recognition particle protein [Burkholderia mallei SAVP1]
 gi|124293482|gb|ABN02751.1| signal recognition particle protein [Burkholderia mallei NCTC
           10229]
 gi|126220655|gb|ABN84161.1| signal recognition particle protein [Burkholderia pseudomallei 668]
 gi|126225596|gb|ABN89136.1| signal recognition particle protein [Burkholderia pseudomallei
           1106a]
 gi|126241126|gb|ABO04219.1| signal recognition particle protein [Burkholderia mallei NCTC
           10247]
 gi|147747027|gb|EDK54104.1| signal recognition particle protein [Burkholderia mallei FMH]
 gi|147752016|gb|EDK59083.1| signal recognition particle protein [Burkholderia mallei JHU]
 gi|160694873|gb|EDP84881.1| signal recognition particle protein [Burkholderia mallei ATCC
           10399]
 gi|238524971|gb|EEP88401.1| signal recognition particle protein [Burkholderia mallei GB8 horse
           4]
 gi|242140514|gb|EES26916.1| signal recognition particle protein [Burkholderia pseudomallei
           1106b]
 gi|243065282|gb|EES47468.1| signal recognition particle protein [Burkholderia mallei PRL-20]
          Length = 455

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V +  + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVRDFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           +DV       Q ++  V + +  ++    +    + +     P +IL+ G+ G GKTT +
Sbjct: 62  EDVIGSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVAPPAIILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFPSTPDQKPVDIANAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   LK      P   L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHAALK------PVETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEIFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|325528039|gb|EGD05259.1| signal recognition particle protein [Burkholderia sp. TJI49]
          Length = 455

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++    +    + +     P VIL+ G+ G GKTT +
Sbjct: 62  EEVISSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVAPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADFFPSTPEQKPVDIALAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRL  +  +M  I  +  VLK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGVLKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|294815366|ref|ZP_06774009.1| Signal recognition particle protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326443719|ref|ZP_08218453.1| signal recognition particle protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294327965|gb|EFG09608.1| Signal recognition particle protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 516

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 145/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +   +    E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   FDTLSDRLANTFKTLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIAKVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSKALNPAQQVIKIVNEELVAILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              +   G   +L A D  R  A++QL + A+R        + G+   D   +A ++ + 
Sbjct: 121 GHWLKSQGHSPLLVACDLQRPNAVNQLSVVAERAGVAVYAPQPGNGVGDPVQVAKDSIEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+++DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 ARTKVHDVVVVDTAGRLGIDEELMRQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       + F   GE ++D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGRQIMFASNGEKLDDFDAFHPDRMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|322831429|ref|YP_004211456.1| signal recognition particle protein [Rahnella sp. Y9602]
 gi|321166630|gb|ADW72329.1| signal recognition particle protein [Rahnella sp. Y9602]
          Length = 453

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FENLSDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFISRVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V + +   +   +   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVQKELETAMGEANTELNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K +L  + D +R AAI QL+  A +   DF  S+       +   A +QA+
Sbjct: 121 AKFLKEKKKKKVLVVSADVYRPAAIKQLETLAQQVEVDFFPSDAQEKPVDIVSRALQQAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH +  +M  I ++   +       P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG ARGG  + I      P+ FLG+GE  + LEPF     ++ I
Sbjct: 235 AFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGMGEKTDALEPFHPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|253701891|ref|YP_003023080.1| signal recognition particle-docking protein FtsY [Geobacter sp.
           M21]
 gi|251776741|gb|ACT19322.1| signal recognition particle-docking protein FtsY [Geobacter sp.
           M21]
          Length = 409

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 120/304 (39%), Positives = 179/304 (58%), Gaps = 3/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
             S+  +L K  + T   +   +  ++   +++D    EELE++LI +D+GV     ++ 
Sbjct: 106 KPSFFERLKKSLSKTHESIVGRVDTLLLGKKQIDTDTLEELEEILITADLGVKTTVDLIR 165

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  +    ++     L   + E I   LM  + P       +P VILV+GVNGVGKTT 
Sbjct: 166 TLEQRLKRDELQDGEALKKALKEEIQLRLMAHAAPLVV-TDKKPFVILVIGVNGVGKTTT 224

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ + +  G KV+LAA DTFR+AA +QL++W+ R  AD V  + G+D +A+ ++A K
Sbjct: 225 IGKLAARYAGEGKKVLLAAADTFRAAAAEQLELWSQRVGADIVRHKEGADPSAVVFDACK 284

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A+  DVLIIDTAGR+H    LM  + K+ RVL R  P APH  L VLDA TGQNAL 
Sbjct: 285 AAVARGTDVLIIDTAGRMHTKVNLMEEMKKIRRVLTREIPDAPHETLLVLDAATGQNALS 344

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q ++F   A  +G+++TK+DG+A+GG ++ +   + +PV F+GVGE + DL  F    F 
Sbjct: 345 QAKLFKEAAFVSGVVLTKLDGSAKGGVVVAVSNEYALPVRFIGVGESVEDLREFDPVQFV 404

Query: 308 AVIT 311
             + 
Sbjct: 405 EALF 408


>gi|294673857|ref|YP_003574473.1| signal recognition particle protein [Prevotella ruminicola 23]
 gi|294474161|gb|ADE83550.1| signal recognition particle protein [Prevotella ruminicola 23]
          Length = 453

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKSFTDTVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGK 130
            +V       Q ++  V + + +++   +     +  +  P +IL+ G+ G GKTT  GK
Sbjct: 62  MNVLTAVKPSQLMVKIVHDELAELMGGKAAELKIEGRAGAPAIILMSGLQGSGKTTFSGK 121

Query: 131 LSKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K + +   K  L  A D +R AAI+QLK+  +             +   +A  A ++A
Sbjct: 122 LAKMLKERNHKKPLLVACDVYRPAAIEQLKVVGETVGVPVYSEPDNKNVVEIANHAIQEA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           ++K  DV+IIDTAGRL  +  +M  I  + + +       P+  L V+D+ TGQ+A+   
Sbjct: 182 KSKANDVVIIDTAGRLAVDEEMMQEIETLKKAVN------PNETLFVVDSMTGQDAVNTA 235

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+      G+I+TK+DG  RGG  + I      P+ F+G GE +  ++ F  +  +  
Sbjct: 236 KEFNDRLDFDGVILTKLDGDTRGGAALSIRTVVTKPIKFVGTGEKMEAIDVFYPERMADR 295

Query: 310 ITGCLD 315
           I G  D
Sbjct: 296 ILGMGD 301


>gi|262065932|ref|ZP_06025544.1| signal recognition particle protein [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380412|gb|EFE87930.1| signal recognition particle protein [Fusobacterium periodonticum
           ATCC 33693]
          Length = 444

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + ++    I    +L D        E++  L+ +D+   V +     +  K   
Sbjct: 2   LENLGNRFQDIFKKIRGHGKLSDSNIKDALREVKMSLLEADVNYKVVKDFTNRISEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V++ + ++L   S        + P +I++ G+ G GKTT   KL
Sbjct: 62  TEVIRGVNPAQQFIKLVNDELVELLGGTSSKLTKGLRN-PTIIMLAGLQGAGKTTFAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K++L   D +R AAI QL++   +   D    E   D   +A  A ++A+ 
Sbjct: 121 AKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVDVYSEEDNKDVVGIATRAIEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +I+DTAGRLH +  LM  + ++ + +K      P  +L V+DA  GQ+A+   E 
Sbjct: 181 INATYMIVDTAGRLHIDETLMNELKELKKAIK------PQEILLVVDAMIGQDAVNLAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+I+TK+DG  RGG  + I      P+ F+GVGE +ND+E F      + I 
Sbjct: 235 FNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKFIGVGEKLNDIEIFHPDRLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|297565941|ref|YP_003684913.1| signal recognition particle-docking protein FtsY [Meiothermus
           silvanus DSM 9946]
 gi|296850390|gb|ADH63405.1| signal recognition particle-docking protein FtsY [Meiothermus
           silvanus DSM 9946]
          Length = 306

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 173/310 (55%), Gaps = 12/310 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +SW+++L +G + T   + + +       R  + V EELE  LI +D+GV   Q+++EE+
Sbjct: 1   MSWLQRLREGLSKTRENIAKSV----PWNRDPEEVLEELEYALISADVGVEATQEVIEEV 56

Query: 71  L---TKRYAKDVSVQRVLYDVSELIHKMLMPLS-----KPFNWDFSHRPHVILVVGVNGV 122
                K   + +    V+    +L+   L  +                  VIL+VGVNGV
Sbjct: 57  RASGKKDLREALKQALVVQLEPDLLRAKLRKVGLFNRGNIQKTTIEPAGQVILMVGVNGV 116

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I KL +     G KVM  AGDTFR+A   QL IW +R     +    GSD AALA
Sbjct: 117 GKTTTIAKLGQYYQSRGKKVMFCAGDTFRAAGGAQLGIWGERIGVPVIQGPEGSDPAALA 176

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A    +A+ +D+L++DTAGRLH    LM  + K+ R + + DP  P  V  VLDA TG
Sbjct: 177 YDAAMARKARGMDLLLVDTAGRLHTKHNLMEELVKVKRSIAKADPGEPGEVWLVLDAVTG 236

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN L Q + F+   G TG+++TK+DGTA+GG L+PIV    +P+ F+G+GE   DL+PF 
Sbjct: 237 QNGLEQAKKFNEAVGLTGVVVTKLDGTAKGGVLVPIVRELGVPIKFIGIGEAATDLQPFD 296

Query: 303 AKDFSAVITG 312
           A +F   + G
Sbjct: 297 AGEFVEALLG 306


>gi|154503296|ref|ZP_02040356.1| hypothetical protein RUMGNA_01120 [Ruminococcus gnavus ATCC 29149]
 gi|153795963|gb|EDN78383.1| hypothetical protein RUMGNA_01120 [Ruminococcus gnavus ATCC 29149]
          Length = 450

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 151/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++ S  RL +       +E++  L+ +D+   V +K V+++  +  
Sbjct: 2   AFDSLTEKLQNVFKNLRSKGRLTEDDVKAALKEVKMALLEADVNFKVVKKFVKDVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E +  ++   +            VI++ G+ G GKTT   K
Sbjct: 62  GQDVMNGLNPGQMVIKIVNEELVNLMGSETTEIKLQPGSAITVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G K +L A D +R AAI QL+I  ++   +       +  A +A  A + A+
Sbjct: 122 LAGKYKLKGKKPLLVACDVYRPAAIKQLQINGEKQGVEVFSMGDKNKPADIAKAALEHAR 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++I+DTAGRLH +  +MA + ++   +        H  + V+DA TGQ+A+    
Sbjct: 182 KNGNNIVILDTAGRLHIDEDMMAELQEIKGTVD------VHQTILVVDAMTGQDAVNVAG 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 SFNDKIGIDGVIVTKLDGDTRGGAALSIKAVTGCPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|190893804|ref|YP_001980346.1| signal recognition particle GTP-binding protein [Rhizobium etli
           CIAT 652]
 gi|190699083|gb|ACE93168.1| signal recognition particle GTP-binding protein [Rhizobium etli
           CIAT 652]
          Length = 525

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FENLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       +   +  P V+++VG+ G GKTT   K+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELIEMLGGEGVGIDL-HAPAPVVVMMVGLQGSGKTTTTAKI 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + ++S     KV++A+ DT R AA +QL+    + S D +    G     +A  A + A+
Sbjct: 121 AHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQASIDTLPIIAGQSPTDIAARAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGGHDVVILDTAGRTHIDEPLMVEMADIKKRSN------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +GVGE +++LE F  +  +  I
Sbjct: 235 NFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|158336916|ref|YP_001518091.1| signal recognition particle GTPase [Acaryochloris marina MBIC11017]
 gi|158307157|gb|ABW28774.1| signal recognition particle GTPase [Acaryochloris marina MBIC11017]
          Length = 501

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 109/314 (34%), Positives = 188/314 (59%), Gaps = 5/314 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            ++V+ E +SW++KL +G   T   L   +  ++    L+      +E LL+++D+G++ 
Sbjct: 186 PEEVSVEEISWLQKLRQGLGKTRRGLANQLKSVVGQGPLNADAVMAIESLLLQADVGISA 245

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRP---HVILVVG 118
             K++E L TK   + +     +  + E++  +L  P  K ++ +F+ +    ++ L+ G
Sbjct: 246 TDKLIEALQTKVREETLPPDAAIAYLKEIMQDILDAPTQKNYSPNFAPKREGMNIWLMTG 305

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNG GKTT IGKL+    ++G   ++AA DTFR+AA++Q+K+W  R++ D + +    +D
Sbjct: 306 VNGAGKTTTIGKLAHISKESGYDCLIAAADTFRAAAVEQVKVWGQRSNVDVIANPGQNTD 365

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A   AQ + +D+L++DTAGRL N   LM  + K+ R++ +  P A    L VL
Sbjct: 366 PAAVVFDAITAAQKRNIDLLLVDTAGRLQNKKNLMDELNKVRRIVSKKAPDAHIESLLVL 425

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DAT GQN LRQ ++F   A  TG+++TK+DG+A+GG  + +V    +P+ F+G GEGI D
Sbjct: 426 DATLGQNGLRQAQVFSEAAELTGVVLTKLDGSAKGGVALAVVQELGLPIRFIGAGEGITD 485

Query: 298 LEPFVAKDFSAVIT 311
           L PF + +F   + 
Sbjct: 486 LRPFSSYEFVEALL 499


>gi|114331694|ref|YP_747916.1| signal recognition particle protein [Nitrosomonas eutropha C91]
 gi|114308708|gb|ABI59951.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nitrosomonas
           eutropha C91]
          Length = 449

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   I  +    RL +        E+   LI +D+ +   +  +E++  +   
Sbjct: 2   FNNLTERLSGVIKTLRGEARLTESNIQEALREVRIALIEADVALPAIKVFIEQVKQRAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q  +  V E +  ++       N + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  HEVLGKLSPGQAFIGVVHEELMAIMGGDKADINLNVA-PPAVILMAGLQGAGKTTSSGKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +      KV+L + D +R AAI+QL + A++T ADF   + G   A ++  A   A+
Sbjct: 121 AKWLMEQKKKKVLLVSCDIYRPAAIEQLALLAEQTGADFFPVKTGQQPAEISTAALDFAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRL  +  +M  I ++ ++L       P   L V+DA  GQ+A+    
Sbjct: 181 KHHHDVVIVDTAGRLGIDEAMMQEISQLEQLLN------PVETLFVVDAMQGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F  V   TG+I+TK+DG ARGG  + +      P+ F GV E +  LEPF     ++ I
Sbjct: 235 AFAEVLPLTGVILTKLDGDARGGAALSVRHITGKPIKFAGVAEKLTGLEPFYPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|238021560|ref|ZP_04601986.1| hypothetical protein GCWU000324_01460 [Kingella oralis ATCC 51147]
 gi|237866174|gb|EEP67216.1| hypothetical protein GCWU000324_01460 [Kingella oralis ATCC 51147]
          Length = 454

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 150/306 (49%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +  +   +I     L +D ++E L +    L+ +D+ + + +  V ++  +   
Sbjct: 2   LDNLTNRFSKVFKNIRGKATLTEDNIKEALREVRLALLEADVALPIVKDFVNQVKERALG 61

Query: 77  KD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +        Q     V+E + +++   +   N   +    V L+ G+ G GKTT +GKL
Sbjct: 62  HEFAHDLTPDQAFFGIVNEALTELMGKENSALNLAAAPPATV-LMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           S+ + +     K++L + D +R AAI+QLK+ A++   DF  S++      +A  A   A
Sbjct: 121 SRLLKEQDKKKKILLVSADVYRPAAIEQLKLLAEQVGVDFFPSDVSQKPVDIALAAQDYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVL++DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   
Sbjct: 181 KKHFYDVLMVDTAGRLAIDEEMMNEIKAIHAAVN------PVETLFVVDAMLGQDAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TKMDG +RGG  + +      P+ FLG+GE IN LEPF     +  
Sbjct: 235 QAFNEALPLTGVILTKMDGDSRGGAALSVRQVTGKPIKFLGIGEKINGLEPFYPDRVAGR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|169824222|ref|YP_001691833.1| signal recognition particle [Finegoldia magna ATCC 29328]
 gi|302380887|ref|ZP_07269349.1| signal recognition particle protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303234951|ref|ZP_07321576.1| signal recognition particle protein [Finegoldia magna BVS033A4]
 gi|167831027|dbj|BAG07943.1| signal recognition particle [Finegoldia magna ATCC 29328]
 gi|302311265|gb|EFK93284.1| signal recognition particle protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302494069|gb|EFL53850.1| signal recognition particle protein [Finegoldia magna BVS033A4]
          Length = 446

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 156/304 (51%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+  ++ + +  +L +   +    E++  L+ +D+   V +  + ++  +   
Sbjct: 3   FENLSDKLQNALSKLTNRGKLTEKDIDVAMREVKLALLEADVNYKVVKDFISQVKERAID 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+V+  V+E + KM+    +  N     +P VI++ G+ G GKTT  GKL
Sbjct: 63  SSVLESLTPGQQVIKIVNEELTKMMGEKEEKLNVS-PMKPTVIMLCGLQGAGKTTHAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  + +    V+L A D +R AAI QL++   +   +        +   ++ +A ++A+ 
Sbjct: 122 ALNLKNKNKSVLLVACDIYRPAAIKQLQVVGGKVGVEVFEMGQI-NPVEISKKAIEEAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D +IIDTAGRLH +  LM  +  + + +   D      +L V+DA TGQ+A+     
Sbjct: 181 KNIDYVIIDTAGRLHIDDTLMDELKNIKQEVNPSD------ILLVVDAMTGQDAVNVAAK 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+I+TK+DG ARGG  + I      P+ F+GVGE + DLEPF     ++ I 
Sbjct: 235 FNEDLDITGIILTKLDGDARGGAALSIRQVADKPIKFIGVGEKLGDLEPFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|304404220|ref|ZP_07385882.1| signal recognition particle protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304347198|gb|EFM13030.1| signal recognition particle protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 449

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/294 (28%), Positives = 138/294 (46%), Gaps = 16/294 (5%)

Query: 32  ITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV--- 84
              +    +L +D V E + +    L+ +D+   V +  V ++  +    +V        
Sbjct: 2   FGKLRGKGKLSEDDVNEAMREVRLALLEADVNFKVVKDFVAKVKEQAVGIEVQKSFTPGM 61

Query: 85  --LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
             +  V + + +++   +       S  P VIL+ G+ G GKTT   KL+K +     K 
Sbjct: 62  VVVDIVHKELIELMGGSATQI-AKASKPPTVILMAGLQGAGKTTTTAKLAKMLMKNNHKP 120

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L AGD +R AAI QL++  ++  A             +A +  + A+A   D +I+DTA
Sbjct: 121 LLIAGDIYRPAAIKQLQVLGEQIGAQVFTLGNDVSPVEIARQGLQHAKANSFDYVIVDTA 180

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL  +  LM  I ++  V++      P  VL V+DA TGQ A+   + FH     TG++
Sbjct: 181 GRLQIDEALMDEIKQIHAVVE------PDEVLLVVDAMTGQEAVNVAQSFHEQLELTGVV 234

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           +TK+DG  RGG  + +      P+ F+  GE I  LE F  +  ++ I G  D 
Sbjct: 235 LTKLDGDTRGGAALSVKAVTGCPIKFVATGEKIEPLEAFHPERMASRILGMGDM 288


>gi|187925412|ref|YP_001897054.1| signal recognition particle protein [Burkholderia phytofirmans
           PsJN]
 gi|187716606|gb|ACD17830.1| signal recognition particle protein [Burkholderia phytofirmans
           PsJN]
          Length = 455

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 145/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V   +  ++    +    + +     P VIL+ G+ G GKTT +
Sbjct: 62  EEVISSLSPGQALVGVVQRELTAIIGGDYEGKAVELNLAVTPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK   ++  ADF  SE       +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADFFPSEPDQKPVDIARAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEAMMQEITALHNTLKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEVFYPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|89098683|ref|ZP_01171565.1| recognition particle-docking protein FtsY [Bacillus sp. NRRL
           B-14911]
 gi|89086645|gb|EAR65764.1| recognition particle-docking protein FtsY [Bacillus sp. NRRL
           B-14911]
          Length = 329

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 121/323 (37%), Positives = 190/323 (58%), Gaps = 7/323 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             K+  ++ +   K   G   T       + D+++  R++D+   EELE++LI++D+G  
Sbjct: 8   KDKITKQTDTVTEKFKDGLTKTRDNFSGKVNDLVARYRKVDEDFFEELEEILIQADVGFD 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKML---MPLSKPFNWDFSHRPHVILVV 117
              ++VEEL  +   K++   + +   +SE + ++       S   N        VIL V
Sbjct: 68  TVMELVEELRMEVKRKNIQDPQGVQSIISEKLVEIYEGSGEASSALNIQEGD-LTVILFV 126

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G KV++AAGDTFR+ AI+QL++W DR   + +    GSD
Sbjct: 127 GVNGVGKTTSIGKLAHKFKSEGKKVLMAAGDTFRAGAIEQLEVWGDRVGVEVIKQAEGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A + A+++  D+L+ DTAGRL N   LM  + K+ RV++R  P APH VL  L
Sbjct: 187 PAAVMFDAVRAAKSRNADILLCDTAGRLQNKVNLMKELEKVKRVIEREIPGAPHEVLLAL 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQNA+ Q + F      +G+++TK+DGTA+GG ++ I     IPV F+G+GE ++D
Sbjct: 247 DATTGQNAMIQAKTFKEATDVSGIVLTKLDGTAKGGIVLAIRKELDIPVKFVGLGEKMDD 306

Query: 298 LEPFVAKDFSAVITG-CLDYGEE 319
           L+ F A+ +   +    ++  EE
Sbjct: 307 LQEFDAERYVYGLFADMVENAEE 329


>gi|194365324|ref|YP_002027934.1| signal recognition particle-docking protein FtsY [Stenotrophomonas
           maltophilia R551-3]
 gi|194348128|gb|ACF51251.1| signal recognition particle-docking protein FtsY [Stenotrophomonas
           maltophilia R551-3]
          Length = 441

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 116/262 (44%), Positives = 163/262 (62%), Gaps = 1/262 (0%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
             LI +D+GV     +VE L  +  A++ V    +L  +   +  +L P++KP   D + 
Sbjct: 174 TALITADVGVGATTDLVEGLRKRMKAREFVDANALLAALRAELIAILQPVAKPLVIDRTA 233

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W +R     
Sbjct: 234 KPFVVLTVGVNGVGKTTTIGKLAKRFKDEGHSLMLAAGDTFRAAAVAQLQAWGERNGVAV 293

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +DAA++A++A +  +A+   VLI DTAGRLH  S LM  +GK+ RVL ++DP A
Sbjct: 294 VAQGQNADAASVAFDALQAGKARGTSVLIADTAGRLHTQSGLMNELGKIRRVLGKIDPTA 353

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V+D TTGQNAL Q+  F+A    TGL++TK+DGTA+GG +  +     IP+ F 
Sbjct: 354 PHEVLMVIDGTTGQNALSQLRQFNAAVNVTGLVVTKLDGTAKGGVVFALAREFGIPIRFA 413

Query: 290 GVGEGINDLEPFVAKDFSAVIT 311
           G+GE   DL  F  + F   + 
Sbjct: 414 GIGERPEDLRVFDPEAFVDALL 435


>gi|300172912|ref|YP_003772077.1| cell division protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299887290|emb|CBL91258.1| Cell division protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 388

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 120/304 (39%), Positives = 178/304 (58%), Gaps = 12/304 (3%)

Query: 18  TKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           TKG   +           +++ R +D+   E+LE+ L+ +D+G  +A KI ++L  +   
Sbjct: 85  TKGLEKSRTGFAARFNKFLANFRSVDEDFFEDLEETLVGADVGFDMAIKISDDLREEVKL 144

Query: 77  KDVSVQRVLYDVSELIHKMLM-----PLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130
           ++V     + DV  +I KM+       +++     F+ +   VIL+VGVNGVGKTT IGK
Sbjct: 145 ENVHRPEDVRDV--IIKKMVDMYEADGVNEDATMHFNVNGTTVILLVGVNGVGKTTTIGK 202

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS K    G  V+LAA DTFR+ A  QL+ W  R     V  +  +D A++ +EA  +A+
Sbjct: 203 LSTKYQQQGKSVLLAAADTFRAGATKQLQEWGIRAGVPVVAGKEKADPASVVFEAVAKAR 262

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D+L +DTAGRL NN  LM  + KM R++KR  P APH VL VLDATTGQNAL+Q +
Sbjct: 263 DEHYDILFVDTAGRLQNNVNLMQELEKMKRIIKREIPGAPHEVLLVLDATTGQNALQQAK 322

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F   +  TG+++TKMDGTA+GG +  I    ++PV ++G GE  +DL  F  ++F   I
Sbjct: 323 LFKNSSDVTGIVLTKMDGTAKGGIVFAIRNDMQLPVKWVGFGEKASDLREFKPEEF---I 379

Query: 311 TGCL 314
            G  
Sbjct: 380 YGMF 383


>gi|238926150|ref|ZP_04657910.1| signal recognition particle protein Ffh [Selenomonas flueggei ATCC
           43531]
 gi|238886040|gb|EEQ49678.1| signal recognition particle protein Ffh [Selenomonas flueggei ATCC
           43531]
          Length = 458

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 140/304 (46%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    +L +        E+   L+ +D+   V +  V  +  +   
Sbjct: 3   FENLSDRLQGIFKKLRRHGKLTEDDVNDAMREVRMALLEADVNFKVVKDFVRRVKERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V     + Q V+  V E +  ++       N    + P VI++VG+ G GKTT  GKL
Sbjct: 63  QEVLDTLTAAQAVVKIVDEELTALMGGTESRLNIS-PNPPTVIMLVGLQGSGKTTSAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L A D +R AAI QL++   +              A         + +
Sbjct: 122 ALMLKKQGKRPLLVADDIYRPAAIKQLEVIGGKVDVPVFSQGQEDAVAIARAA-IAHSSS 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRL  +  LM  +  +   +K      PH +L V+DA TGQ A+   E 
Sbjct: 181 HANDVVIIDTAGRLQIDETLMQELRDIKAEVK------PHEILLVVDAMTGQEAVNVAEA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A  G  G+IMTK+DG ARGG  + I      P+ F+G+GE +  LE F     ++ I 
Sbjct: 235 FDASLGLDGVIMTKLDGDARGGAALSIKAVTGCPLKFVGMGEKLEPLEVFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|154686011|ref|YP_001421172.1| hypothetical protein RBAM_015780 [Bacillus amyloliquefaciens FZB42]
 gi|154351862|gb|ABS73941.1| FtsY [Bacillus amyloliquefaciens FZB42]
          Length = 329

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 122/309 (39%), Positives = 185/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+  ++ S   K   G   T       + +++S  R++D+   EELE++LI +D+G  
Sbjct: 8   KEKITKQTDSVSEKFKDGLEKTRNSFSNKVNELVSRYRKVDEDFFEELEEVLIGADVGFT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
              ++++EL  +   K++   + +  V SE +  +     +  +       R +VIL+VG
Sbjct: 68  TVMELIDELKKEVKLKNIQDPQEVQSVISEKLVDIYNSGDEQISELNIQDERLNVILLVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K+ + G  V+LAAGDTFR+ AI+QL++W +RT    +    GSD 
Sbjct: 128 VNGVGKTTTIGKLAHKLKNEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQAAGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+A+  DVLI DTAGRL N   LM  + K+ RV++R  P APH VL  LD
Sbjct: 188 AAVIYDAVHAAKARGADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLALD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I     IPV  +G+GE ++DL
Sbjct: 248 ATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVDDL 307

Query: 299 EPFVAKDFS 307
           + F A+ + 
Sbjct: 308 QRFDAESYV 316


>gi|148240067|ref|YP_001225454.1| Signal recognition particle protein [Synechococcus sp. WH 7803]
 gi|147848606|emb|CAK24157.1| Signal recognition particle protein [Synechococcus sp. WH 7803]
          Length = 523

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++ D    G  +++   L+ +D+ + V +  V ++  K   
Sbjct: 31  FDELSARFEDAVKGLRGQDKISDTNVEGALKDVRRALLEADVSLPVVKAFVADVREKAVG 90

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+ +  V E + +++   + P        P V+L+ G+ G GKTT   KL
Sbjct: 91  SDVVRGVSPDQKFIQVVHEQLVEVMGGGNAPL-AQAETAPTVVLMAGLQGAGKTTATAKL 149

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + D G + ++   D +R AAI+QLK    +   +       +   A+A     +A+ 
Sbjct: 150 GLHLKDQGRRALMVGADVYRPAAIEQLKTLGGQIGVEVFSLGADAKPEAIAAAGLAKAKE 209

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D L++DTAGRL  +S +M  + ++   ++      P  VL V+D+  GQ A      
Sbjct: 210 EGFDTLLVDTAGRLQIDSEMMEEMVRIRTAVQ------PDEVLLVVDSMIGQEAAELTRA 263

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 264 FHEQVGITGAVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRIL 323

Query: 312 GCLD 315
           G  D
Sbjct: 324 GMGD 327


>gi|116254274|ref|YP_770112.1| signal recognition particle protein (fifty-four homolog) [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258922|emb|CAK10031.1| putative signal recognition particle protein (fifty-four homolog)
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 528

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FENLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       +   +  P V+++VG+ G GKTT   K+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELIEMLGGEGVGIDL-HAPAPVVVMMVGLQGSGKTTTSAKI 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + ++S     KV++A+ DT R AA +QL+    + + D +    G     +A  A + A+
Sbjct: 121 AHRLSTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTLPIISGQSPTDIAARAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGGHDVVILDTAGRTHIDEPLMVEMADIKKRSN------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +GVGE +++LE F  +  +  I
Sbjct: 235 NFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|304383803|ref|ZP_07366261.1| signal recognition particle protein [Prevotella marshii DSM 16973]
 gi|304335059|gb|EFM01331.1| signal recognition particle protein [Prevotella marshii DSM 16973]
          Length = 452

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLEHSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKTFTDTVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++   +   N    +RP +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIVHDELAELMGGQATEVNLK--NRPAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     +  L  A D +R AAI+QL++   +   +        D   +A  A + A+
Sbjct: 120 ANLLKTKQHRHPLLVACDVYRPAAIEQLRVVGTQIGVEVYSEPDSKDVVEIAQHAIQHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D ++IDTAGRL  +  +M+ I  + + +       P   L V+DA TGQ+A+   +
Sbjct: 180 AKSYDTVVIDTAGRLAVDEEMMSEIATLKKAVT------PDETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLNFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFIGTGEKMEAIDVFHPDRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|78042210|dbj|BAE46928.1| goadsporin biosynthetic protein [Streptomyces sp. TP-A0584]
          Length = 518

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 148/307 (48%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  ++++  +   
Sbjct: 2   FDTLSDRLAATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIKQVKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQVIKIVNEELISILGGETRRLKY-AKTGPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              +       +L A D  R  A++QL + ADR    F   E G+   D   +A ++ + 
Sbjct: 121 GHWLKQQKHTPLLVACDLQRPNAVNQLNVVADRAGVAFYGPEPGNGVGDPVKVARDSIEY 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ ++ DV I+DTAGRL  ++ +M     +   ++      P  VL V+DA  GQ+A+  
Sbjct: 181 AKQRQYDVFIVDTAGRLGIDAEMMQQASDIRAAVQ------PDEVLFVVDAMVGQDAVTT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG++++K+DG ARGG  + +       + F   GE ++D + F     ++
Sbjct: 235 AQAFLDGVDFTGVVLSKLDGDARGGAALSVAHVTGRQIMFASNGEKVDDFDAFHPDRMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|303256295|ref|ZP_07342311.1| signal recognition particle-docking protein FtsY [Burkholderiales
           bacterium 1_1_47]
 gi|330998992|ref|ZP_08322717.1| signal recognition particle-docking protein FtsY [Parasutterella
           excrementihominis YIT 11859]
 gi|302861024|gb|EFL84099.1| signal recognition particle-docking protein FtsY [Burkholderiales
           bacterium 1_1_47]
 gi|329575734|gb|EGG57260.1| signal recognition particle-docking protein FtsY [Parasutterella
           excrementihominis YIT 11859]
          Length = 315

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 124/317 (39%), Positives = 186/317 (58%), Gaps = 9/317 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
             E   W  +L +G   T + L      I +   +D+   E+LE  +I +DIGV  +  I
Sbjct: 4   TKEKTGWFARLKQGLRKTQVNLVG----IFTGGVVDEAFLEDLEFQMISADIGVETSALI 59

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E L  +   K +  Q  +   + E+I  +L P     N+D  H+P VI++ GVNG GKT
Sbjct: 60  LERLRERIKLKGLKTQDEVKVALKEIIADILRPCEASLNFD-EHKPLVIMMCGVNGAGKT 118

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K  +    KV+LAA DTFR+AA +QL +W DR   + + S+   D A++AY+A
Sbjct: 119 TTIGKLAKHFAQLNKKVLLAAADTFRAAAKEQLAVWGDRNQIEVI-SQEKGDPASVAYDA 177

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
               + K +D++++DTAGRL   + LM  + ++ +V  +    APH V+ VLD T GQNA
Sbjct: 178 ISSGRKKGMDIVMVDTAGRLPTQTNLMNELARIRKVQGKAMEGAPHEVILVLDGTNGQNA 237

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV--VTHKIPVYFLGVGEGINDLEPFVA 303
           L Q + F   AG TGLI+TK+DGTA+GG L+ +       +P+Y++GVGE I+DL+PF A
Sbjct: 238 LMQAKAFDEAAGLTGLIITKLDGTAKGGVLVALANSREKPLPIYYIGVGETIDDLQPFKA 297

Query: 304 KDFSAVITGCLDYGEEK 320
            +F+A + G    G +K
Sbjct: 298 DEFAAALVGLDQIGGKK 314


>gi|225028000|ref|ZP_03717192.1| hypothetical protein EUBHAL_02269 [Eubacterium hallii DSM 3353]
 gi|224954714|gb|EEG35923.1| hypothetical protein EUBHAL_02269 [Eubacterium hallii DSM 3353]
          Length = 451

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + KL+    ++ S  RL +  V+E   E++  L+ +D+   V +  V+ +  +  
Sbjct: 2   AFESLTDKLQNVFKNLRSKGRLTEADVKEAMKEVKRALLEADVNFRVVKSFVKTVTDRAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V E +  ++            +   V L+ G+ G GKTT   K
Sbjct: 62  GQDVLTGLNPGQMVIKIVKEEMESLMGSEMTELVIKQGNEITVFLMAGLQGAGKTTTCAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ ++   G K +L A D +R AAI QL++   +            +   +A  + + A+
Sbjct: 122 IAGQLKKKGKKPLLVACDVYRPAAIKQLEVNGAKQGVPVFTMGDKQNPVDIAKASIEHAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++I+DTAGRLH +  +M  +  +   +           + V+DA TGQ+A+   +
Sbjct: 182 ENDNNIVILDTAGRLHVDESMMEELQNIKANVD------VTQTVLVVDAMTGQDAVNVAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I+TK+DG  RGG  + I      P+ ++G+GE + DL+ F     ++ I
Sbjct: 236 TFEEKVGIDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLEDLQQFYPDRMTSRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|311068116|ref|YP_003973039.1| signal recognition particle-docking protein FtsY [Bacillus
           atrophaeus 1942]
 gi|310868633|gb|ADP32108.1| signal recognition particle-docking protein FtsY [Bacillus
           atrophaeus 1942]
          Length = 329

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 120/309 (38%), Positives = 188/309 (60%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+  ++ S   K  +G   T    ++ + D++S  R++D+   EELE++LI +D+G  
Sbjct: 8   KEKITKQTDSVSEKFKEGLEKTRSSFQDKVNDLVSRYRKVDEDFFEELEEVLIGADVGFT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF-SHRPHVILVVG 118
              ++++EL  +   +++   + +  V   +L+        +  + +    R +VIL+VG
Sbjct: 68  TVMELIDELKKEVKLRNIQDPQEVQSVISEKLVEIYNSGDEQVSDLNIQVGRLNVILLVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K+ + G  V+LAAGDTFR+ AI+QL++W +RT    +    GSD 
Sbjct: 128 VNGVGKTTTIGKLAHKLKEEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQAAGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A   A+A++ DVLI DTAGRL N   LM  + K+ RV++R  P APH VL  LD
Sbjct: 188 AAVIYDAVHAAKAREADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPHEVLLALD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I     IPV  +G+GE ++DL
Sbjct: 248 ATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVDDL 307

Query: 299 EPFVAKDFS 307
           + F  + + 
Sbjct: 308 QQFDPESYV 316


>gi|260467296|ref|ZP_05813470.1| signal recognition particle protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259028900|gb|EEW30202.1| signal recognition particle protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 535

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   +  +     L +        E+   L+ +D+ + V +   +++  K   
Sbjct: 2   FESLQERLGSILNGLTGRGALSEADVSAALREVRRALLEADVALEVVRAFTDKVRDKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + +  ML       + + +  P V+++VG+ G GKTT   K+
Sbjct: 62  AAVLKSIKPGQMVVKIVHDELVDMLGAEGVAIDLN-APAPVVVMMVGLQGSGKTTTSAKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      KV++A+ DT R AA +QL+   ++     +    G +   +A  A + A+
Sbjct: 121 AKRLTERQNKKVLMASLDTRRPAAQEQLRQLGEQVKVATLPVIAGQNPVDIAKRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +V       +PH +L V D+ TGQ+A+   +
Sbjct: 181 LGGHDVVILDTAGRTHIDEPLMVEMADIKKV------SSPHEILLVADSLTGQDAVNLAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +G GE ++ LE F  K  +  I
Sbjct: 235 SFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGTGEKMDGLEEFHPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|237739056|ref|ZP_04569537.1| signal recognition particle protein [Fusobacterium sp. 2_1_31]
 gi|229423656|gb|EEO38703.1| signal recognition particle protein [Fusobacterium sp. 2_1_31]
          Length = 444

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + ++    I    +L D        E++  L+ +D+   V +     +  K   
Sbjct: 2   LENLGNRFQDIFKKIRGHGKLSDSNIKDALREVKMSLLEADVNYKVVKDFTNRISEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V++ + ++L   S        + P +I++ G+ G GKTT   KL
Sbjct: 62  TEVIRGVNPAQQFIKLVNDELVELLGGTSSKLTKGLRN-PTIIMLAGLQGAGKTTFAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K++L   D +R AAI QL++   +   D    E   D   +A  A ++A+ 
Sbjct: 121 AKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVDVYSEEDNKDVVGIATRAIEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +I+DTAGRLH +  LM  + ++ + +K      P  +L V+DA  GQ+A+   E 
Sbjct: 181 INATYMIVDTAGRLHVDETLMNELKELKKAIK------PQEILLVVDAMIGQDAVNLAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+I+TK+DG  RGG  + I      P+ F+GVGE +ND+E F      + I 
Sbjct: 235 FNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKFIGVGEKLNDIEIFHPDRLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|91785263|ref|YP_560469.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           xenovorans LB400]
 gi|91689217|gb|ABE32417.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           xenovorans LB400]
          Length = 455

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 145/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V   +  ++    +    + +     P VIL+ G+ G GKTT +
Sbjct: 62  EEVISSLSPGQALVGVVQRELTAIIGGDYEGKAVELNLAVTPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK   ++  ADF  SE       +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADFFPSEPDQKPVDIARAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WARRHYHDVLLVDTAGRLGIDEAMMKEITALHAELKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|217979109|ref|YP_002363256.1| signal recognition particle protein [Methylocella silvestris BL2]
 gi|217504485|gb|ACK51894.1| signal recognition particle protein [Methylocella silvestris BL2]
          Length = 540

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL      +     L +        E+   L+ +D+ + V +  V+++  +   
Sbjct: 2   FEGLSEKLSSIFDSLTRRGALSEEDVNLALREVRRALLEADVALDVVRSFVDKVRARAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V++++ + L   + P N D +  P  I++VG+ G GKTT   K+
Sbjct: 62  ANVVKSVTPGQMVVKIVNDVLIETLGSDADPINLDAAA-PVAIMMVGLQGAGKTTTAAKI 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G KV++A+ D  R AA +QL +   +   D +    G     +A  A +  +
Sbjct: 121 AKRLKEQMGRKVLMASLDVKRPAAQEQLAVLGRQVGVDTLPIVAGQTPVQIAVRAEQAGR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV++ DTAGR H +  LM  + ++           PH +L V D+ TGQ+A+   +
Sbjct: 181 LQGYDVVLFDTAGRTHIDEALMQEMVEIKAA------SRPHEILLVADSLTGQDAVHLAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  LG GE ++ LE F     +  I
Sbjct: 235 NFDDRVGITGIVLTRVDGDGRGGAALSMRAVTGKPIKLLGSGEKMDALEDFHPSRIANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|150025532|ref|YP_001296358.1| Signal recognition particle protein [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772073|emb|CAL43549.1| Signal recognition particle protein [Flavobacterium psychrophilum
           JIP02/86]
          Length = 449

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL +    +    ++ +       +E+   L+ +D+   +A+    ++  K   
Sbjct: 2   FNSLSEKLDKAFHILKGHGKITEVNVADTLKEVRRALLDADVNFKIAKDFTAKVKEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q ++  V + + +++       N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  ADVLTTLQPGQLLVKIVKDELTELMGGDVAGINL--SGTPTVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAI+QL +   +   +        +   +A  A K A+
Sbjct: 120 ANFLKTKKNKKPLLVACDIYRPAAINQLHVVGGQIGVEVYSEPENKNPVEIAQNAIKHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   +V+I+DTAGRL  +  +MA I ++ + ++      P   L V+DA TGQ+A+   +
Sbjct: 180 ANGFNVVIVDTAGRLAVDEEMMAEISRVHKAIQ------PQETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +    G+I+TK+DG  RGG  I I      P+ F+G GE ++ ++ F  +  +  I
Sbjct: 234 AFNDILNFDGVILTKLDGDTRGGAAISIKSVVNKPIKFVGTGEKMDAIDVFYPERMAERI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|307731042|ref|YP_003908266.1| signal recognition particle protein [Burkholderia sp. CCGE1003]
 gi|307585577|gb|ADN58975.1| signal recognition particle protein [Burkholderia sp. CCGE1003]
          Length = 455

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 145/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V   +  ++    +    + +     P VIL+ G+ G GKTT +
Sbjct: 62  EEVLSSLSPGQALVGVVQRELTAVIGGDYEGKASELNLAVTPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK   ++  ADF  SE       +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADFFPSEPDQKPVDIARAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHSTLKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEVFYPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|119960504|ref|YP_948184.1| signal recognition particle protein [Arthrobacter aurescens TC1]
 gi|119947363|gb|ABM06274.1| signal recognition particle protein [Arthrobacter aurescens TC1]
          Length = 526

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 145/313 (46%), Gaps = 25/313 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V+V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLTEADVDATVREIRRALLDADVAVSVVREFTGRIRERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E + ++L   ++         P +I++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPSQQIVKIVNEELKEILGGETRRIRL-AKTGPTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC---------SEIGSDAAALA 182
           SK +   G   ML A D  R  A+ QL++   R                     D  A+A
Sbjct: 121 SKWLKAQGHSPMLVACDLQRPNAVTQLQVVGQRAGVPVFAPHPGATSELEHPAGDPVAVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
               ++A+ K  DV+I+DTAGRL  ++ +M    ++ + +       P+ VL V+D+  G
Sbjct: 181 KAGVEEARQKLHDVVIVDTAGRLGVDAEMMDQARRIRQAI------IPNEVLFVIDSMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+     F      TG++++K+DG ARGG  + +      PV F   GEG++D E F 
Sbjct: 235 QDAVNTAMAFDEGVNFTGIVLSKLDGDARGGAALSVASVTGKPVMFASTGEGLDDFELFH 294

Query: 303 AKDFSAVITGCLD 315
               ++ I    D
Sbjct: 295 PDRMASRILDMGD 307


>gi|332157931|ref|YP_004423210.1| signal recognition particle protein Srp54 [Pyrococcus sp. NA2]
 gi|331033394|gb|AEC51206.1| signal recognition particle protein Srp54 [Pyrococcus sp. NA2]
          Length = 443

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L   +  I  +  +D+ + +E    ++  LI++D+ V +   +  E+  +   
Sbjct: 3   LDTLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLNLTREIQRRALE 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +         + ++  V E + K L   ++P   +   +P ++L+VGV G GKTT + KL
Sbjct: 63  EKPPAGISRKEHIIKIVYEELTKFLGTEARPI--EIREKPTILLMVGVQGSGKTTTVAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G KV +   DT+R  A  QLK   D    +        DA  LA E  K  + 
Sbjct: 121 ARYFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPQEKDAIKLAREGVKHFKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VD++I+DTAGR      L+  + ++   +       PH V+ V+D T GQ A  Q   
Sbjct: 181 KGVDLIIVDTAGRHKEEKNLIEEMRQISEAIN------PHEVILVIDGTIGQQAYNQALA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+D +A+GGG +  V     P+ F+GVGE I+D+EPF    F + + 
Sbjct: 235 FKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGVGEKIDDIEPFDPARFVSRLL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GLGD 298


>gi|58580944|ref|YP_199960.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425538|gb|AAW74575.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 494

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   +  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   
Sbjct: 38  FESLTQRLSGTMERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 97

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P ++L+ G+ G GKTT +GKL
Sbjct: 98  QEVLKSLTPGQALIKIVRDELTAVMGAAAADVNLNVPA-PAIVLMAGLQGAGKTTTVGKL 156

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K ++  + D +R AAI+QLK  A++    F  S+       +   A   A+
Sbjct: 157 AKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDAR 216

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  + ++M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 217 KSFVDVLLVDTAGRLAIDQVMMDEIKALHAAVN------PTETLFVVDAMTGQDAANTAK 270

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+G GE  + L+ F     ++ I
Sbjct: 271 AFGEALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVFHPDRVASRI 330

Query: 311 TGCLD 315
               D
Sbjct: 331 LDMGD 335


>gi|16330898|ref|NP_441626.1| signal recognition particle protein [Synechocystis sp. PCC 6803]
 gi|2500885|sp|P74214|SRP54_SYNY3 RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|1653392|dbj|BAA18306.1| signal recognition particle protein [Synechocystis sp. PCC 6803]
          Length = 482

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++    +    ++ +       +E+   L+ +D+ + V +  ++++  K   
Sbjct: 2   FDALADRLEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGFIKDVEQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+ +  V + +  ++   + P        P VIL+ G+ G GKTT   KL
Sbjct: 62  ADVISGVNPGQQFIKIVYDELVNLMGESNVPL-AQAEQAPTVILMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       ++ A D +R AAIDQLK    +           ++   +A +  ++A+ 
Sbjct: 121 ALYLRKQKRSALMVATDVYRPAAIDQLKTLGQQIDVPVFDLGSDANPVEIARQGVEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VD ++IDTAGRL  +  +MA + ++ +V+K      P   L V+DA TGQ A      
Sbjct: 181 LGVDTVLIDTAGRLQIDPQMMAELAEIKQVVK------PDDTLLVVDAMTGQEAANLTHT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TK+DG  RGG  + +      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FHEQIGITGAILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRLASRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 NMGD 298


>gi|323527400|ref|YP_004229553.1| signal recognition particle protein [Burkholderia sp. CCGE1001]
 gi|323384402|gb|ADX56493.1| signal recognition particle protein [Burkholderia sp. CCGE1001]
          Length = 455

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 145/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V   +  ++    +    + +     P VIL+ G+ G GKTT +
Sbjct: 62  EEVISSLSPGQALVGVVQRELTAVIGGDYEGKASELNLAVTPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK   ++  ADF  SE       +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADFFPSEPDQKPVDIARAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHSTLKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEVFYPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|331001995|ref|ZP_08325515.1| signal recognition particle protein [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330411791|gb|EGG91196.1| signal recognition particle protein [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 451

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++    RL +       +E+   L+ +D+   V +  ++ +  K  
Sbjct: 2   AFESLSEKLQNVFKNLRGKGRLTEDDVRAGLKEVRLALLEADVSFKVVKDFIKSIQEKAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V+E +  ++   +       S    VI++ G+ G GKTT   K
Sbjct: 62  GSDVLNSLTPAQQVIKIVNEEMVSLMGSETTELKIKPSGDITVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+   G   +L   D +R AAI+QLK   ++              A +A  A + A+
Sbjct: 122 LAGKLKKKGNSPLLVGCDIYRPAAIEQLKRNGEKVDVPVFEMGTAHKPAEIAKRALEFAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++ +DTAGRLH +  +M  + ++       D      ++ V+DA TGQ+A+   E
Sbjct: 182 ENHHNIVFLDTAGRLHIDEDMMNELLEIK------DNVNVDDIILVVDAMTGQDAVNVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + +      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 TFNEKLDITGVILTKLDGDTRGGAALSVRAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|329936725|ref|ZP_08286432.1| signal recognition particle protein [Streptomyces griseoaurantiacus
           M045]
 gi|329303955|gb|EGG47838.1| signal recognition particle protein [Streptomyces griseoaurantiacus
           M045]
          Length = 521

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +   +    E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FDTLSDRLSATFKSLRGKGRLSEADIDATAREIRIALLEADVALPVVRTFIKNVKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+VL  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  SEVSRALNPAQQVLKIVNEELVTILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + + + G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 121 GRWLKEQGHSPLLVACDLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVKVAKDSIEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  D++I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 AKTKVHDIVIVDTAGRLGIDQELMRQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I      P+ F   GE +++ + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIASVTGKPIMFASNGEKLDEFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|257469002|ref|ZP_05633096.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium
           ulcerans ATCC 49185]
          Length = 446

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + +E    +    +L +       +E+   L+ +D+   V +    ++L K   
Sbjct: 2   LDNLGSRFQEIFKKVRGHGKLSESNIKEALKEVRMSLLEADVNYKVVKDFTNKILEKSVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+ +  V++ + ++L   +        + P V+++ G+ G GKTT   KL
Sbjct: 62  TDVLKGINPGQQFIKVVNDELVELLGGTNSRLTKGVRN-PTVLMLSGLQGAGKTTFAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G  V++   D +R AAI QL++  ++        E   DA A+      +A+ 
Sbjct: 121 ANYLKKQGESVLMVGADVYRPAAIKQLQVLGEQVDVPVYAEEDNKDAVAICEHGLAKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +IIDTAGRLH +  LM  +  + + +       P  +L V+DA  GQ+A+   E 
Sbjct: 181 LNSTYMIIDTAGRLHIDEKLMDELRNIKKAV------RPQEILLVVDAMIGQDAVNLAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ V    G+++TK+DG  RGG  + I      P+ F+GVGE I+D+E F  +   + I 
Sbjct: 235 FNNVLSIDGIVLTKLDGDTRGGAALSIKSVVGKPIKFVGVGERIDDIELFHPERLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|240146503|ref|ZP_04745104.1| signal recognition particle-docking protein FtsY [Roseburia
           intestinalis L1-82]
 gi|257201359|gb|EEU99643.1| signal recognition particle-docking protein FtsY [Roseburia
           intestinalis L1-82]
 gi|291535141|emb|CBL08253.1| signal recognition particle-docking protein FtsY [Roseburia
           intestinalis M50/1]
 gi|291539670|emb|CBL12781.1| signal recognition particle-docking protein FtsY [Roseburia
           intestinalis XB6B4]
          Length = 314

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 129/316 (40%), Positives = 182/316 (57%), Gaps = 4/316 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  E   +  +L  G + T   +  GI  I S    +DD   EE+E++LI  DIGV   +
Sbjct: 1   MGEEKKGFWSRLVSGLSKTRDNIVSGIDSIFSGFSSIDDDFYEEIEEILIMGDIGVNATE 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVG 123
            I+E L  K     +       ++  LI+ +   +      + F +   V+LV+GVNGVG
Sbjct: 61  AIIENLKEKVKENKIKDPAECKEL--LINSIKEQMDVGETAYRFENEKSVVLVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ K+ D G KV+LAA DTFR+AA DQL  WA+R   + +  + G+D A++ Y
Sbjct: 119 KTTSVGKLAGKLKDQGKKVVLAAADTFRAAAGDQLLEWANRAGVEMIGGQEGADPASIVY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+  DVL+ DTAGRLHN   LM  + K+ R+L++  P A    L VLDATTGQ
Sbjct: 179 DAVAAAKARNADVLLCDTAGRLHNKKNLMEELKKINRILEKEYPDAYRETLVVLDATTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F  VA  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I DL+ F +
Sbjct: 239 NALAQARQFSEVAEITGIILTKMDGTAKGGIAVAIHSELGIPVKYIGVGETIEDLQKFDS 298

Query: 304 KDFSAVITGCLDYGEE 319
            +F   +    D  E+
Sbjct: 299 NEFVNALFDIKDQAEQ 314


>gi|212693973|ref|ZP_03302101.1| hypothetical protein BACDOR_03497 [Bacteroides dorei DSM 17855]
 gi|237710361|ref|ZP_04540842.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237723897|ref|ZP_04554378.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212663505|gb|EEB24079.1| hypothetical protein BACDOR_03497 [Bacteroides dorei DSM 17855]
 gi|229437723|gb|EEO47800.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229455823|gb|EEO61544.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 440

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKGFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +     +   RP VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTALMGGETAELVLE--GRPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++  ++            +   +A  A  +A+
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLRVLGEQIEVPVYSELDSKNPVQIALNAIHEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  + + +       P   L V+D+ TGQ+A+    
Sbjct: 180 AKGYDLVIVDTAGRLAIDEQMMNEIEAIKKAIN------PDETLFVVDSMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRTVVNKPIKFVGTGEKLDAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|209551321|ref|YP_002283238.1| signal recognition particle protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537077|gb|ACI57012.1| signal recognition particle protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 527

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FENLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       +   +  P V+++VG+ G GKTT   K+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELIEMLGGEGVGIDL-HAPAPVVVMMVGLQGSGKTTTSAKI 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + ++S     KV++A+ DT R AA +QL+    + S D +    G     +A  A + A+
Sbjct: 121 AHRLSTRDKKKVLMASLDTRRPAAQEQLRQLGAQASIDTLPIISGQSPTDIAARAVQAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGGHDVVILDTAGRTHIDEPLMVEMADIKKRSN------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +GVGE +++LE F  +  +  I
Sbjct: 235 NFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|265751175|ref|ZP_06087238.1| signal recognition particle protein [Bacteroides sp. 3_1_33FAA]
 gi|263238071|gb|EEZ23521.1| signal recognition particle protein [Bacteroides sp. 3_1_33FAA]
          Length = 440

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKGFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +     +   RP VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTALMGGETAELVLE--SRPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++  ++            +   +A  A  +A+
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLRVLGEQIEVPVYSELDSKNPVQIALNAIHEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  + + +       P   L V+D+ TGQ+A+    
Sbjct: 180 AKGYDLVIVDTAGRLAIDEQMMNEIEAIKKAIN------PDETLFVVDSMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRTVVNKPIKFVGTGEKLDAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|76811591|ref|YP_334886.1| signal recognition particle protein [Burkholderia pseudomallei
           1710b]
 gi|134280471|ref|ZP_01767182.1| signal recognition particle protein [Burkholderia pseudomallei 305]
 gi|167740273|ref|ZP_02413047.1| signal recognition particle protein [Burkholderia pseudomallei 14]
 gi|167817493|ref|ZP_02449173.1| signal recognition particle protein [Burkholderia pseudomallei 91]
 gi|167825895|ref|ZP_02457366.1| signal recognition particle protein [Burkholderia pseudomallei 9]
 gi|167895968|ref|ZP_02483370.1| signal recognition particle protein [Burkholderia pseudomallei
           7894]
 gi|167912613|ref|ZP_02499704.1| signal recognition particle protein [Burkholderia pseudomallei 112]
 gi|167920560|ref|ZP_02507651.1| signal recognition particle protein [Burkholderia pseudomallei
           BCC215]
 gi|217421079|ref|ZP_03452584.1| signal recognition particle protein [Burkholderia pseudomallei 576]
 gi|226196827|ref|ZP_03792406.1| signal recognition particle protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|254180580|ref|ZP_04887178.1| signal recognition particle protein [Burkholderia pseudomallei
           1655]
 gi|254190983|ref|ZP_04897489.1| signal recognition particle protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199068|ref|ZP_04905483.1| signal recognition particle protein [Burkholderia pseudomallei S13]
 gi|254260222|ref|ZP_04951276.1| signal recognition particle protein [Burkholderia pseudomallei
           1710a]
 gi|254299333|ref|ZP_04966783.1| signal recognition particle protein [Burkholderia pseudomallei
           406e]
 gi|76581044|gb|ABA50519.1| signal recognition particle protein [Burkholderia pseudomallei
           1710b]
 gi|134248478|gb|EBA48561.1| signal recognition particle protein [Burkholderia pseudomallei 305]
 gi|157809273|gb|EDO86443.1| signal recognition particle protein [Burkholderia pseudomallei
           406e]
 gi|157938657|gb|EDO94327.1| signal recognition particle protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169656898|gb|EDS88295.1| signal recognition particle protein [Burkholderia pseudomallei S13]
 gi|184211119|gb|EDU08162.1| signal recognition particle protein [Burkholderia pseudomallei
           1655]
 gi|217396491|gb|EEC36508.1| signal recognition particle protein [Burkholderia pseudomallei 576]
 gi|225931087|gb|EEH27095.1| signal recognition particle protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|254218911|gb|EET08295.1| signal recognition particle protein [Burkholderia pseudomallei
           1710a]
          Length = 455

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V +  + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVRDFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           +DV       Q ++  V + +  ++    +    + +     P +IL+ G+ G GKTT +
Sbjct: 62  EDVIGSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVAPPAIILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFPSTPDQKPVDIANAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   LK      P   L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHTALK------PVETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEIFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|255529983|ref|YP_003090355.1| signal recognition particle protein [Pedobacter heparinus DSM 2366]
 gi|255342967|gb|ACU02293.1| signal recognition particle protein [Pedobacter heparinus DSM 2366]
          Length = 446

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 145/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL      +     + +       +E+   L+ +D+    A+   +E+  K   
Sbjct: 2   FENLQDKLDRAFKVLKGQGSITEINVAETMKEIRKALLDADVNYKTAKSFTDEVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q +   +++ +  ++         D    P +IL+ G+NG GKTT  GKL
Sbjct: 62  ANVLTAVSPGQLLTKIMNDELAALMGGEVTEL--DLKTNPTIILIAGLNGAGKTTFTGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  + + G K +L AGD +R AA+DQL+I  ++       +    D   +A E   + + 
Sbjct: 120 ANFLKNKGKKPLLVAGDVYRPAAVDQLQILGEQIGVPVYANTASKDPVGIALEGIAEGKK 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ +V+IIDTAGRL  +  +M  I  +    K      PH +L V+DA TGQ+A+   + 
Sbjct: 180 QQNNVIIIDTAGRLAIDEQMMDEIAAVKESTK------PHEILFVVDAMTGQDAVNTAKA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TK+DG  RGG  + I      P+ F+G GE +  L+ F  +  ++ I 
Sbjct: 234 FNDRLDFTGVVLTKLDGDTRGGAALSIKSVVNKPIKFIGTGEKMEALDVFYPERMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|188996328|ref|YP_001930579.1| signal recognition particle-docking protein FtsY
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931395|gb|ACD66025.1| signal recognition particle-docking protein FtsY
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 304

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 115/302 (38%), Positives = 187/302 (61%), Gaps = 2/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            S+  K+ KG   T  +L EG + I   R++D+ + E++E +L+++D+GV   Q+I++ L
Sbjct: 3   KSFFEKVKKGLEKTKKQLAEGFSKISFGRKIDESLFEDIEAVLLKADVGVKATQEIIQFL 62

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   + ++  + L ++  E I+ +L        +    +P V+L +G+NG GKTT +G
Sbjct: 63  REESKKRKITEGQQLKELLKEKIYDILKDCEGRLTF-LGEKPDVLLFLGINGSGKTTTVG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+  +   G  V+LAA DTFR+AAIDQL++WA+R     V  + G+D +A+ ++A   A
Sbjct: 122 KLAYMLKQDGKSVVLAAADTFRAAAIDQLEVWANRVGVRIVKHQPGADPSAVVFDAINSA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +AK  D++I+DTAGRLH    LM  + K+ + + +   + P   L VLD T GQN++ Q 
Sbjct: 182 KAKGDDIVIVDTAGRLHTKEHLMKELQKIKKTIAKFSENQPVETLLVLDGTIGQNSINQA 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      +G+I+TK+DGT++GG +IPI    KIP+ F+GVGEGI+DL+PF AK+F   
Sbjct: 242 KTFKEATDVSGIIITKLDGTSKGGAIIPICKDLKIPIKFIGVGEGIDDLQPFDAKEFVDA 301

Query: 310 IT 311
           + 
Sbjct: 302 LF 303


>gi|332799150|ref|YP_004460649.1| signal recognition particle-docking protein FtsY [Tepidanaerobacter
           sp. Re1]
 gi|332696885|gb|AEE91342.1| signal recognition particle-docking protein FtsY [Tepidanaerobacter
           sp. Re1]
          Length = 297

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 187/303 (61%), Gaps = 9/303 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +++I KL +  + T     E   +I+  ++++D+   EELE+LLI +D+GV+  Q ++E+
Sbjct: 1   MAFIDKLKQSLSKTRESFSEKFDNILKFNKKIDEKTFEELEELLISADVGVSTTQMLIEK 60

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L     +K ++    L  V  E I  +    +    +     P V+L+VGVNGVGKTT I
Sbjct: 61  LKE--NSKKITAAEELKSVLKEEIIDLFPKENISLTY-----PTVMLIVGVNGVGKTTSI 113

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+    + G KV+LAA DTFR+AAIDQL+IW  R   D +  + G+D A++ ++A + 
Sbjct: 114 GKLANIYKNQGKKVILAAADTFRAAAIDQLEIWGQRVGVDVIKHQEGADPASVLFDALQA 173

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+K D++I DTAGRLH    LM  + K+ RV ++  P A    L VLDATTGQNAL Q
Sbjct: 174 GKARKADLIICDTAGRLHTKKNLMEELKKLYRVCQKEYPQANVVSLIVLDATTGQNALIQ 233

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            +MF      +G+I+TK+DGTA+GG +I I     IPV+++G+GEGINDL  F ++DF  
Sbjct: 234 AKMFKEAVDFSGIILTKLDGTAKGGIVIAIASELGIPVWYIGIGEGINDLHEFNSQDFVD 293

Query: 309 VIT 311
            I 
Sbjct: 294 AIF 296


>gi|332285431|ref|YP_004417342.1| signal recognition particle protein [Pusillimonas sp. T7-7]
 gi|330429384|gb|AEC20718.1| signal recognition particle protein [Pusillimonas sp. T7-7]
          Length = 471

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 149/317 (47%), Gaps = 28/317 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   LDNLTQRLSRVVKTMRGEARLTEANTQDMLREVRMALLEADVALPVVRDFIAKVKERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           +DV       Q ++  V + +  ++         + S     P VIL+ G+ G GKTT  
Sbjct: 62  QDVVGSLNPGQALVGVVHKELTALMGGDLGAEASELSLASQPPAVILMAGLQGAGKTTST 121

Query: 129 GKLSKKMSDAG----------LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GKL+K +S+ G           KV++ + D +R AAI+QLK  A +   DF+ +      
Sbjct: 122 GKLAKWLSEGGHIQGGRKTGKKKVLVVSADVYRPAAIEQLKTVAAQVKVDFLPTNTLQKP 181

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +  +A   A+    DVLI+DTAGRL  +  +M  I  +  +L       P   L V+D
Sbjct: 182 EDIGRQALDHAKRHHYDVLIVDTAGRLGIDEAMMGEIRALHDLLT------PIETLFVVD 235

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+   + F      TG+++TKMDG ARGG  + +      P+ F+G+ E ++ L
Sbjct: 236 AMQGQDAVNVAQAFSQALPLTGVVLTKMDGDARGGAALSVRHVTGKPLKFVGLSEKMDGL 295

Query: 299 EPFVAKDFSAVITGCLD 315
           EPF  +  +  I G  D
Sbjct: 296 EPFHPERMAQRILGMGD 312


>gi|224130192|ref|XP_002320775.1| predicted protein [Populus trichocarpa]
 gi|222861548|gb|EEE99090.1| predicted protein [Populus trichocarpa]
          Length = 365

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 182/311 (58%), Gaps = 6/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDG--VREELEDLLIRSDIGVAVA 63
           +  ++ S + K+  GF+ T   L   I +++    L +   V +ELE+ L+ SD G  + 
Sbjct: 55  IKEKAKSDVEKIFSGFSKTRDNL-AVIDELLLYWNLSETDRVLDELEEALLVSDFGPRIT 113

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
            +IVE+L     A  +     + D + + +  +L              +P V+++VGVNG
Sbjct: 114 IQIVEKLREDILAGKLKSGSEIKDALKKSVLDLLQKKGNKTELQLGFRKPAVVMIVGVNG 173

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEIGSDAAA 180
            GKTT +GKL+ ++ + G K+++AAGDTFR+AA DQL+IWA+RT  +  V     + A++
Sbjct: 174 GGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVADREKAKASS 233

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A K+ + ++ DV++ DT+GRLH N  LM  +    + + ++   AP+ +L VLD T
Sbjct: 234 VLSQAVKKGKEQEFDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVRGAPNEILLVLDGT 293

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L Q   F+ V G TG I+TK+DG+ARGG ++ +V    IPV F+GVGEG+ DL+P
Sbjct: 294 TGLNMLPQAREFNEVVGITGFILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQP 353

Query: 301 FVAKDFSAVIT 311
           F A+ F   I 
Sbjct: 354 FDAEAFVNAIF 364


>gi|329847629|ref|ZP_08262657.1| signal recognition particle-docking protein FtsY [Asticcacaulis
           biprosthecum C19]
 gi|328842692|gb|EGF92261.1| signal recognition particle-docking protein FtsY [Asticcacaulis
           biprosthecum C19]
          Length = 326

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 130/308 (42%), Positives = 191/308 (62%), Gaps = 1/308 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65
             +   W  +LT G + TS  L E +T + S +  L D   E LEDLLI SD+G  ++  
Sbjct: 15  EEKKKGWFERLTHGLSRTSQTLTEQVTQVFSQKESLSDSDLEALEDLLIESDLGPQISAN 74

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           I  ++   +++       V   ++  +   L+     F      +P+++L VGVNG GKT
Sbjct: 75  ISAKMAQAKFSSSKDSTAVREALASALADELVNHEGTFEPLGGPKPYIVLFVGVNGSGKT 134

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GK++  ++  G KV++ AGDTFR+AA++QLK+W++R  ADF+  + G+DAA LAY++
Sbjct: 135 TTLGKIAASLTAKGAKVLIVAGDTFRAAAVEQLKVWSERAKADFMGRKTGADAAGLAYDS 194

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +A+ +  DV++IDTAGRL N   LM  + K++RV+KR+DP APH  L VLDAT G+NA
Sbjct: 195 VVKAKEEGYDVVLIDTAGRLQNKQALMDELLKIVRVIKRVDPDAPHETLLVLDATVGRNA 254

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q ++F   A  +GL+MTK+DGTARGG LIPI      P+  +GVGE I DL  F A+D
Sbjct: 255 LSQEQIFGRQAFVSGLVMTKLDGTARGGILIPIAKASDAPIKLIGVGEDIEDLHAFKARD 314

Query: 306 FSAVITGC 313
           F+  + G 
Sbjct: 315 FARSMVGL 322


>gi|258648342|ref|ZP_05735811.1| signal recognition particle-docking protein FtsY [Prevotella
           tannerae ATCC 51259]
 gi|260851507|gb|EEX71376.1| signal recognition particle-docking protein FtsY [Prevotella
           tannerae ATCC 51259]
          Length = 321

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 120/309 (38%), Positives = 177/309 (57%), Gaps = 9/309 (2%)

Query: 17  LTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L  G   T   +   +  I+    ++DD V ++LED LI SD+GV     I+  +  +  
Sbjct: 16  LDAGLEKTKTNVFNKLARIVVGKSKVDDEVLDDLEDALISSDVGVETTVDIIRRIEDRVA 75

Query: 75  YAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K V+   +   + + +  +L        + F    + RP+VILVVGVNGVGKTT IGK
Sbjct: 76  RDKYVTTSELNKLLRDEVSSLLTESGNNEDEGFIIPENGRPYVILVVGVNGVGKTTTIGK 135

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G +V L A DTFR+AA++QL IW +R     +  ++GSD A++AY+    A+
Sbjct: 136 LAYHFKQEGKRVYLGAADTFRAAAVEQLCIWGERIGVPVIKQQMGSDPASVAYDTLSSAK 195

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV++IDTAGRLHN   LM  + K+ +V++++ P AP  VL VLD +TGQNA  Q +
Sbjct: 196 ANNADVVLIDTAGRLHNKVNLMNELTKIKKVIQKVIPEAPDEVLLVLDGSTGQNAFEQAK 255

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      T L +TK+DGTA+GG ++ I    K+PV ++G+GE + DL+PF   DF   +
Sbjct: 256 QFIKATDVTSLAITKLDGTAKGGVVLGISHQLKVPVRYIGLGERMQDLQPFNKTDFVESL 315

Query: 311 TGCLDYGEE 319
               D GE+
Sbjct: 316 ---FDTGEK 321


>gi|237813885|ref|YP_002898336.1| signal recognition particle protein [Burkholderia pseudomallei
           MSHR346]
 gi|237502771|gb|ACQ95089.1| signal recognition particle protein [Burkholderia pseudomallei
           MSHR346]
          Length = 455

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V +  + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVRDFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           +DV       Q ++  V + +  ++    +    + +     P +IL+ G+ G GKTT +
Sbjct: 62  EDVIGSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVAPPAIILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQIGADFFPSTPDQKPVDIANAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   LK      P   L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHTALK------PVETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEIFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|257058483|ref|YP_003136371.1| signal recognition particle protein [Cyanothece sp. PCC 8802]
 gi|256588649|gb|ACU99535.1| signal recognition particle protein [Cyanothece sp. PCC 8802]
          Length = 492

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 139/304 (45%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++    +    ++ +        E+   L+ +D+ + V +  + ++      
Sbjct: 2   FDALAERLEDAWKKLRGQDKITENNIQDALTEVRRALLAADVNLQVVKNFIADVEKAALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + K++   + P     +  P VIL+ G+ G GKTT   KL
Sbjct: 62  AEVISGVNPGQQFIKIVYDELVKVMGESNVPLATTATA-PTVILMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       ++ A D +R AAIDQL     +           ++   +A +  ++A+ 
Sbjct: 121 ALYLRKQKRSCLMVATDIYRPAAIDQLITLGQQIEVPVFELGSEANPVDIARQGVEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VD ++IDTAGRL  +  +M  + ++   +K      P   L V+DA TGQ A      
Sbjct: 181 LGVDTVLIDTAGRLQIDESMMVELARIKEAVK------PDDTLLVVDAMTGQEAANLTRT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TKMDG  RGG  + +      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FHEQIGITGAILTKMDGDTRGGAALSVRQISGQPIKFIGVGEKVEALQPFYPDRMASRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 NMGD 298


>gi|254253308|ref|ZP_04946626.1| Signal recognition particle protein [Burkholderia dolosa AUO158]
 gi|124895917|gb|EAY69797.1| Signal recognition particle protein [Burkholderia dolosa AUO158]
          Length = 455

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++    +    + +     P VIL+ G+ G GKTT +
Sbjct: 62  EEVISSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVTPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADFFPSTPDQKPVDIAVAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRL  +  +M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGTLKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|294791388|ref|ZP_06756545.1| signal recognition particle protein [Scardovia inopinata F0304]
 gi|294457859|gb|EFG26213.1| signal recognition particle protein [Scardovia inopinata F0304]
          Length = 554

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 149/322 (46%), Gaps = 32/322 (9%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L E   ++ S  +L     DG   E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLTEAFKNLRSKGKLSESDIDGTIREIRRALLDADVSLTVVKSFTARVRQRA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
             ++VS      Q+V+  V++ +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 62  LGEEVSQALNPAQQVVSIVNDELTDILGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD----------- 177
           GKL   + D G   +L A D  R  A+ QL++  +R        E G             
Sbjct: 121 GKLGYWLKDLGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEPGVQSATSDVVSPGL 180

Query: 178 ----AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                  +A ++ + A++K  D +IIDTAGRL  +  LM     +       D   P+ +
Sbjct: 181 TAGDPVKVARDSIEVAKSKLYDTVIIDTAGRLGVDQELMQQARNI------RDAVHPNEI 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+DA  GQ+A+   + F      TG++++K+DG ARGG  + +      P+ F   GE
Sbjct: 235 LFVIDAMIGQDAVATAKAFDQGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFSSTGE 294

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
           G+ D E F     ++ I    D
Sbjct: 295 GLKDFEVFHPDRMASRILDMGD 316


>gi|89068002|ref|ZP_01155419.1| signal recognition particle-docking protein FtsY [Oceanicola
           granulosus HTCC2516]
 gi|89046241|gb|EAR52298.1| signal recognition particle-docking protein FtsY [Oceanicola
           granulosus HTCC2516]
          Length = 384

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 124/277 (44%), Positives = 187/277 (67%), Gaps = 1/277 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           +  R LDD + E LE+LLI +D+GV  A ++   +    Y K VS + +   ++  + ++
Sbjct: 106 VVRRVLDDEMLESLEELLITADLGVETAVRVTANIAEDLYGKRVSTEEIKRALAAEVARI 165

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + P+++P     S RP V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA+
Sbjct: 166 MEPVARPLPLYPS-RPQVVLVVGVNGSGKTTTIGKLASQFRAAGKNVVIAAGDTFRAAAV 224

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL++W +R     + +  GSD A+LA++A  +AQA   D+L+IDTAGRL N + LM  +
Sbjct: 225 EQLQVWGERAGVPVLTAPEGSDPASLAFDALGKAQADGADLLLIDTAGRLQNRADLMEEL 284

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K++RV+++ DP APH+ L VLDATTGQN L QV+ F  +A  +GL+MTK+DGTA+GG L
Sbjct: 285 AKIVRVIRKKDPDAPHNTLLVLDATTGQNGLSQVKTFQQLADVSGLVMTKLDGTAKGGVL 344

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           + +     +P++ +GVGE I+DL PF  ++F+  + G
Sbjct: 345 VALADRFGLPIHAIGVGEQIDDLAPFDPQEFADALVG 381


>gi|296129315|ref|YP_003636565.1| signal recognition particle protein [Cellulomonas flavigena DSM
           20109]
 gi|296021130|gb|ADG74366.1| signal recognition particle protein [Cellulomonas flavigena DSM
           20109]
          Length = 536

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/315 (26%), Positives = 147/315 (46%), Gaps = 27/315 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L     ++ +  RL     D    E+   L+ +D+ V V ++    +  +  +
Sbjct: 2   FATLSDRLTSTFKNLRTKGRLSEADIDATIREIRRALLDADVAVTVVRQFTGAVRERALS 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKVVNEELVAILGGQTRTLAF-AKQPPTVVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-----------AAA 180
           +  + + G   +L A D  R  A+ QL++  +R          G+              A
Sbjct: 121 ALWLREQGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPHPGNQGADDVLPAGADPVA 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A    + A+ K+ DV+++DTAGRL  ++ LMA    +       D   P  VL V+DA 
Sbjct: 181 VARAGVETARQKQHDVVVVDTAGRLGVDAELMAQASDI------RDAVQPDEVLFVVDAM 234

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ+A+   + F    G TG++++K+DG ARGG  + I      P+ +   GE + D E 
Sbjct: 235 IGQDAVTTAQAFADGVGFTGVVLSKLDGDARGGAALSIASVTGRPIMYASTGEKLTDFEV 294

Query: 301 FVAKDFSAVITGCLD 315
           F     ++ I    D
Sbjct: 295 FHPDRMASRILDMGD 309


>gi|163869270|ref|YP_001610526.1| signal recognition particle protein [Bartonella tribocorum CIP
           105476]
 gi|161018973|emb|CAK02531.1| signal recognition particle protein [Bartonella tribocorum CIP
           105476]
          Length = 520

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   ++ +     L D        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FESLQERLGSILSHLTGRGALSDQDVAEALREIRRALLEADVALDVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + ++L   S   + + +  P VI+++G+ G GKTT   KL
Sbjct: 62  TEIVKSIKPGQMVVKIVHDELVRILGNESVLSDLN-APAPVVIMMIGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+ +D    KV++A+ DT R AA +QL+   ++     +    G     +A  A + A+
Sbjct: 121 AKRFTDKHNKKVLMASLDTRRPAAQEQLRQLGEQAKLASLPIIAGQLPVDIASRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGR H +  LM  + ++           PH ++ V D+ TGQ+A+    
Sbjct: 181 LGGYDVLLLDTAGRNHIDEALMLELAEIKAC------SLPHEIMLVADSLTGQDAVHLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+I+T+MD   RGG  + +      P+  +G GE I DLE F     +  I
Sbjct: 235 SFDERVGITGIILTRMDSDGRGGAALSMRAVTGKPIKAIGTGEKIEDLEEFHPSRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|312871860|ref|ZP_07731944.1| signal recognition particle protein [Lactobacillus iners LEAF
           3008A-a]
 gi|312872406|ref|ZP_07732475.1| signal recognition particle protein [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091988|gb|EFQ50363.1| signal recognition particle protein [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092582|gb|EFQ50942.1| signal recognition particle protein [Lactobacillus iners LEAF
           3008A-a]
          Length = 475

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 150/307 (48%), Gaps = 18/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S KL++ +  +    ++ +        E+   L+ +D+   V +K ++ +  +  
Sbjct: 2   AFENLSEKLQKALRKLTGKGKISENDINQASREIRLALLEADVNFKVVKKFIKTIKAEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAIDQLK      +     SE  +D  A+      QA
Sbjct: 121 LANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLNVPVY-SENNTDVVAIVENGLMQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +IIDTAGRL  +  LM  +  ++ V    +      ++ V DA TGQ A    
Sbjct: 180 DRNHNDYVIIDTAGRLEIDDQLMDELKNIVDVAHPEN------IILVADAMTGQVAATVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F++    TGLI+TK+DG  RGG  + I     +P+ F G GE + +L+ F     ++ 
Sbjct: 234 EGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDRMASR 293

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 294 ILGMGDM 300


>gi|218245446|ref|YP_002370817.1| signal recognition particle protein [Cyanothece sp. PCC 8801]
 gi|218165924|gb|ACK64661.1| signal recognition particle protein [Cyanothece sp. PCC 8801]
          Length = 492

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 139/304 (45%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++    +    ++ +        E+   L+ +D+ + V +  + ++      
Sbjct: 2   FDALAERLEDAWKKLRGQDKITENNIQDALTEVRRALLAADVNLQVVKNFIADVEKAALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + K++   + P     +  P VIL+ G+ G GKTT   KL
Sbjct: 62  AEVISGVNPGQQFIKIVYDELVKVMGESNVPLATTATA-PTVILMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       ++ A D +R AAIDQL     +           ++   +A +  ++A+ 
Sbjct: 121 ALYLRKQKRSCLMVATDIYRPAAIDQLITLGQQIEVPVFELGSEANPVDIARQGVEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VD ++IDTAGRL  +  +M  + ++   +K      P   L V+DA TGQ A      
Sbjct: 181 LGVDTVLIDTAGRLQIDESMMVELARIKEAVK------PDDTLLVVDAMTGQEAANLTRT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TKMDG  RGG  + +      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FHEQIGITGAILTKMDGDTRGGAALSVRQISGQPIKFIGVGEKVEALQPFYPDRMASRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 NMGD 298


>gi|317063249|ref|ZP_07927734.1| signal recognition particle protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313688925|gb|EFS25760.1| signal recognition particle protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 448

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + +E    +    +L +       +E+   L+ +D+   V +    ++L K   
Sbjct: 4   LDNLGSRFQEIFKKVRGHGKLSESNIKEALKEVRMSLLEADVNYKVVKDFTNKILEKSVG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+ +  V++ + ++L   +        + P V+++ G+ G GKTT   KL
Sbjct: 64  TDVLKGINPGQQFIKVVNDELVELLGGTNSRLTKGVRN-PTVLMLSGLQGAGKTTFAAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G  V++   D +R AAI QL++  ++        E   DA A+      +A+ 
Sbjct: 123 ANYLKKQGESVLMVGADVYRPAAIKQLQVLGEQVDVPVYAEEDNKDAVAICEHGLAKAKE 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +IIDTAGRLH +  LM  +  + + +       P  +L V+DA  GQ+A+   E 
Sbjct: 183 LNSTYMIIDTAGRLHIDEKLMDELRNIKKAV------RPQEILLVVDAMIGQDAVNLAES 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ V    G+++TK+DG  RGG  + I      P+ F+GVGE I+D+E F  +   + I 
Sbjct: 237 FNNVLSIDGIVLTKLDGDTRGGAALSIKSVVGKPIKFVGVGERIDDIELFHPERLVSRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|149280108|ref|ZP_01886232.1| signal recognition particle protein [Pedobacter sp. BAL39]
 gi|149229122|gb|EDM34517.1| signal recognition particle protein [Pedobacter sp. BAL39]
          Length = 446

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 144/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL      +     + +       +E+   L+ +D+    A+   +++  K   
Sbjct: 2   FENLQDKLDRAFKVLKGQGSITEINVAETMKEIRKALLDADVNYKTAKSFTDDVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q +   +++ +  ++         D  + P +IL+ G+NG GKTT  GKL
Sbjct: 62  LNVLTAVSPGQLLTKVMNDELTALMGGEVTEI--DLKNNPTIILIAGLNGAGKTTFTGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G K +L AGD +R AA+DQL+I  ++       +    D   +A E   + + 
Sbjct: 120 ANYLKSKGKKPLLVAGDVYRPAAVDQLQILGEQIGVPVYANIESKDPVGIALEGIAEGKK 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +V+IIDTAGRL  +  +M  I  +    K      PH +L V+DA TGQ+A+   + 
Sbjct: 180 QHNNVIIIDTAGRLAIDEQMMDEIAAVKENTK------PHEILFVVDAMTGQDAVNTAKA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TK+DG  RGG  + I      P+ F+G GE +  L+ F  +  ++ I 
Sbjct: 234 FNDRLDFTGVVLTKLDGDTRGGAALSIKSVVNKPIKFIGTGEKMEALDVFYPERMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|330255506|gb|AEC10600.1| fused signal recognition particle receptor [Arabidopsis thaliana]
          Length = 373

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 118/318 (37%), Positives = 181/318 (56%), Gaps = 13/318 (4%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL--DDGVREELEDLLIRSDIGVAVA 63
           +  ++ S + K+  GF+ T   L   I +++    L   D V +ELE+ L+ SD G  + 
Sbjct: 56  IKEKAKSDVEKVFSGFSKTRENL-AVIDELLLFWNLAETDRVLDELEEALLVSDFGPKIT 114

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
            +IVE L     +  +     + D + E + +ML   +          +P VI++VGVNG
Sbjct: 115 VRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNG 174

Query: 122 VGKTTVI-------GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE- 173
            GKTT +       GKL+ ++ + G KV++AAGDTFR+AA DQL+IWA+RT  + V +E 
Sbjct: 175 GGKTTSLDSGFCFSGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 234

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             + AA +  +A K+ + +  DV++ DT+GRLH N  LM  +    + + ++   AP+ +
Sbjct: 235 DKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEI 294

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLD  TG N L Q   F+ V G TGLI+TK+DG+ARGG ++ +V    IPV F+GVGE
Sbjct: 295 LLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 354

Query: 294 GINDLEPFVAKDFSAVIT 311
            + DL+PF  + F   I 
Sbjct: 355 AVEDLQPFDPEAFVNAIF 372


>gi|309805506|ref|ZP_07699551.1| signal recognition particle protein [Lactobacillus iners LactinV
           09V1-c]
 gi|312874462|ref|ZP_07734492.1| signal recognition particle protein [Lactobacillus iners LEAF
           2052A-d]
 gi|308165157|gb|EFO67395.1| signal recognition particle protein [Lactobacillus iners LactinV
           09V1-c]
 gi|311090074|gb|EFQ48488.1| signal recognition particle protein [Lactobacillus iners LEAF
           2052A-d]
          Length = 475

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 150/307 (48%), Gaps = 18/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S KL++ +  +    ++ +        E+   L+ +D+   V +K ++ +  +  
Sbjct: 2   AFENLSEKLQKALRKLTGKGKISENDINQASREIRLALLEADVNFKVVKKFIKTIKAEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAIDQLK      +     SE  +D  A+      QA
Sbjct: 121 LANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLNVPVY-SENNTDVVAIVENGLMQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +IIDTAGRL  +  LM  +  ++ V    +      ++ V DA TGQ A    
Sbjct: 180 DRNHNDYVIIDTAGRLEIDDQLMDELKNIVDVAHPEN------IILVADAMTGQVAATVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F++    TGLI+TK+DG  RGG  + I     +P+ F G GE + +L+ F     ++ 
Sbjct: 234 EGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDRMASR 293

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 294 ILGMGDM 300


>gi|167586054|ref|ZP_02378442.1| signal recognition particle protein [Burkholderia ubonensis Bu]
          Length = 455

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 146/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++    +    + +     P VIL+ G+ G GKTT  
Sbjct: 62  EEVISSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVTPPAVILMAGLQGAGKTTTA 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADFFPSTPDQKPVDIALAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRL  +  +M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHATLKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFVGVAEKLDGLEIFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|182413527|ref|YP_001818593.1| signal recognition particle-docking protein FtsY [Opitutus terrae
           PB90-1]
 gi|177840741|gb|ACB74993.1| signal recognition particle-docking protein FtsY [Opitutus terrae
           PB90-1]
          Length = 319

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 172/316 (54%), Gaps = 14/316 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
              +K   G A T   +      +   R++D    EELE+ L  +D GV   ++I+ E+ 
Sbjct: 3   GLFKKFKDGLAKTVSTIAAKTHGLFGGRKIDAASLEELEEALYAADFGVETTEEILAEIK 62

Query: 72  TK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-------------SHRPHVILVV 117
                 K +  Q      + ++ ++L       +                S  P VI ++
Sbjct: 63  AAYAKDKTLQGQAAAAIGAAVLKRVLAGSEGALDGAGAGGPGPGSASPATSKEPIVIAMI 122

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNG GKTT   KL  ++ + G  V LAA DTFR+AA++QLK WA R   + V S  G+D
Sbjct: 123 GVNGSGKTTTAAKLGWRLKEDGKTVTLAACDTFRAAAVEQLKTWATRLDLEIVASHTGAD 182

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           +AA+A++A++ A+++  D LI+DTAGRLH    LM  + K+ RVL++ DP AP     V+
Sbjct: 183 SAAVAFDAWQAAKSRGRDYLIVDTAGRLHTKHNLMEELAKIRRVLQKNDPTAPQHRWLVV 242

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D + G N++ Q   FH   G TGL++TK+DGT+RGG ++ I    K+P+YFLG+GE   D
Sbjct: 243 DGSLGSNSIEQARAFHKSFGLTGLVVTKLDGTSRGGAIVGIYRQLKLPIYFLGLGEQAED 302

Query: 298 LEPFVAKDFSAVITGC 313
           L+PF  +++   + G 
Sbjct: 303 LQPFSVENYVNALFGL 318


>gi|218291549|ref|ZP_03495423.1| signal recognition particle-docking protein FtsY [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238644|gb|EED05869.1| signal recognition particle-docking protein FtsY [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 305

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 123/302 (40%), Positives = 180/302 (59%), Gaps = 5/302 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +    +  KG   +   + + +  +   RRLDD V EE+E+ LI SD+GV  A ++V   
Sbjct: 1   MGLFDRFRKGLEKSRAAMADRLLSVFRGRRLDDSVFEEMEETLILSDVGVDTAVELV--- 57

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW--DFSHRPHVILVVGVNGVGKTTVI 128
              R            D+ +++  +++    P     +    P V+LVVGVNG GKTT I
Sbjct: 58  EAIRREARRRRIERAEDLPDVMVDVMVEFLGPPAEMAENPDGPTVVLVVGVNGAGKTTTI 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G +V+LAA DTFR+AAI+QL +W +R   D V    GSD AA+ Y+A + 
Sbjct: 118 GKLAHAYKSQGKRVILAAADTFRAAAIEQLMVWGERVGVDVVRHAQGSDPAAVVYDAIQA 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A++ D++I DTAGRL N + LM  + K+ +V +R  P APH VL V+D TTGQN L Q
Sbjct: 178 AKARRCDLVICDTAGRLQNKAHLMNELAKIRKVAERELPGAPHEVLLVIDGTTGQNGLVQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F  V   TG+++TK+DGTA+GG + PIV    IPV ++G+GEG++DL+PF  + F+ 
Sbjct: 238 ARVFKEVVRVTGIVVTKLDGTAKGGIVFPIVREEGIPVKWIGLGEGMDDLQPFDPRMFAE 297

Query: 309 VI 310
            I
Sbjct: 298 AI 299


>gi|167571288|ref|ZP_02364162.1| signal recognition particle protein [Burkholderia oklahomensis
           C6786]
          Length = 455

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V +  + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVRDFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           +DV       Q ++  V + +  ++    +    + +     P +IL+ G+ G GKTT +
Sbjct: 62  EDVVGSLSPGQALVGVVQKELTAVIGGDYEGKAVELNLAVTPPAIILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFPSTPDQKPVDIANAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   LK      P   L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEAMMQEITALHAALK------PVETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEIFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|88809131|ref|ZP_01124640.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH
           7805]
 gi|88787073|gb|EAR18231.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH
           7805]
          Length = 489

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++ D    G  +++   L+ +D+ + V +  V ++  K   
Sbjct: 2   FDELSARFEDAVKGLRGQDKISDTNVEGALKDVRRALLEADVSLPVVKDFVADVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+ +  V E + +++   + P        P V+L+ G+ G GKTT   KL
Sbjct: 62  SDVVRGVSPDQKFIQVVHEQLVEVMGGGNAPL-AQAEEAPTVVLMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + D G + ++   D +R AAI+QLK    +   +       +   A+A     +A+ 
Sbjct: 121 GLHLKDQGRRALMVGADVYRPAAIEQLKTLGGQIGVEVFSLGADAKPEAIAAAGLAKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D L++DTAGRL  ++ +M  + ++   ++      P  VL V+D+  GQ A      
Sbjct: 181 EGFDTLLVDTAGRLQIDTEMMEEMVRIRTAVQ------PDEVLLVVDSMIGQEAAELTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHEQVGITGAVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|87301562|ref|ZP_01084402.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           WH 5701]
 gi|87283779|gb|EAQ75733.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           WH 5701]
          Length = 532

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 174/312 (55%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V+ E + W+ +L +G   T   L   + D +    L   V ++LE  L+R+D+GV    
Sbjct: 219 QVSLEEIDWLSRLRRGMEKTRRGLVTQLLDSLGDDPLTPEVLDDLETTLLRADVGVQATD 278

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM----PLSKPFNWDFSHRPHVILVVGVN 120
            ++E L  +   + V     L  + E +  +L        +        R +V L+VGVN
Sbjct: 279 HVLEALRRRLNEEVVEPAEGLRFLKEQLRGLLETPIEASGELLLAPQRDRLNVWLLVGVN 338

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           GVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+ +W +R+    + +    +D A
Sbjct: 339 GVGKTTTLGKLANLAVRSGYSCLIAAADTFRAAAVQQVTVWGERSGVPVIANPSANADPA 398

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A   A +K ++++++DTAGRL   + LM  + K+ R++ +L P A    L VLDA
Sbjct: 399 AVVYDAIGAAHSKGIELVLVDTAGRLQTKNNLMEELSKVRRIVDKLAPEAVVESLLVLDA 458

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN LRQ   F + AG TG+++TK+DG+ARGG  + +     +P+ F+G GEGI DL 
Sbjct: 459 SQGQNGLRQAMAFASAAGLTGVVLTKLDGSARGGVALAVASEAGLPIRFIGAGEGIRDLR 518

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 519 PFNSFEFVEALL 530


>gi|118468367|ref|YP_886770.1| signal recognition particle protein [Mycobacterium smegmatis str.
           MC2 155]
 gi|118169654|gb|ABK70550.1| signal recognition particle protein [Mycobacterium smegmatis str.
           MC2 155]
          Length = 522

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 91/317 (28%), Positives = 145/317 (45%), Gaps = 29/317 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +    RL D   +    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FESLSDRLTGALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFVARIKERAKG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSAALNPAQQVVKIVNEELIGILGGETRQLAF-AKTPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA------ 185
           +K + D G   +L A D  R  A++QL+I  +R          G+   A   E       
Sbjct: 121 AKWLKDKGHSPLLVACDLQRPGAVNQLQIVGERAGVAVFAPHPGTAPGAHETEGAGPGDP 180

Query: 186 -------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                    +A+ K   V+I+DTAGRL  + +LMA    +       D   P   L VLD
Sbjct: 181 VAVAAAGLAEAKTKLYGVVIVDTAGRLGIDDVLMAQAAGI------RDAVQPDETLFVLD 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+   E F    G TG+++TK+DG ARGG  + +     +P+ F   GE + D 
Sbjct: 235 AMIGQDAVATAEAFREGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFASAGEKLEDF 294

Query: 299 EPFVAKDFSAVITGCLD 315
           + F     ++ I G  D
Sbjct: 295 DVFHPDRMASRILGMGD 311


>gi|317063570|ref|ZP_07928055.1| signal recognition particle receptor FtsY [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689246|gb|EFS26081.1| signal recognition particle receptor FtsY [Fusobacterium ulcerans
           ATCC 49185]
          Length = 320

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 176/308 (57%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVA 63
           K   ES  +   L      +   L   +   I+    +D  + EELED+LI+SDIG+ + 
Sbjct: 12  KKEEESKGFFTSLKDKLFKSREGLFGKLKSFILGRSVIDFEMYEELEDILIQSDIGMDMT 71

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            KIV  L  +   + +   + +Y V + + +  +            + +VILVVGVNGVG
Sbjct: 72  VKIVGALEKEVKKRGIKDPKDIYPVLKEVMEGFLIKEGNDIVIEDGKLNVILVVGVNGVG 131

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K    G KV+L AGDTFR+AAI+QL+ WA R+ A+ V S  GSD  A+ +
Sbjct: 132 KTTTIGKLASKFVKDGKKVILGAGDTFRAAAIEQLEEWAKRSGAEIVKSTQGSDPGAVVF 191

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +    A+A+  D+ IIDTAGRLHN + LM  + K+  ++K+      +  + V+D TTGQ
Sbjct: 192 DTLAAAEARGADIAIIDTAGRLHNKNNLMKELEKIHNIIKKKLGDQHYESILVIDGTTGQ 251

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N L Q ++F+ V   TG I+TK+DGTA+GG +  I    K P+ F+GVGE I DL  F A
Sbjct: 252 NGLSQAKVFNEVTDLTGFIITKLDGTAKGGIVFSISEEIKKPIKFIGVGEKIEDLRKFDA 311

Query: 304 KDFSAVIT 311
           K++   I 
Sbjct: 312 KEYIQAIF 319


>gi|288928375|ref|ZP_06422222.1| signal recognition particle protein [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288331209|gb|EFC69793.1| signal recognition particle protein [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 450

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     I    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKIIKGEGKITEINVAETLKDVRRALLDADVNYKVAKTFTDTVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + +  ++   +       ++RP +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIVHDELAALMGGET--VGLQLTNRPAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AAI+QL++ A +            +   +A  A ++A+
Sbjct: 120 ANLLKGKQHKNPLLVACDVYRPAAIEQLRVVAQQVGVPVYSEPDNKNVVEIANNAIREAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I ++ + L       P   L V+D+ TGQ+A+    
Sbjct: 180 AKGNDVVIVDTAGRLAVDEEMMDEIYRLKQALN------PDETLFVVDSMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F  +  +  I
Sbjct: 234 EFNDRLDIDGVVLTKLDGDTRGGAALSIRTVVTKPIKFVGTGEKMEAIDVFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|259501562|ref|ZP_05744464.1| signal recognition particle protein [Lactobacillus iners DSM 13335]
 gi|302191464|ref|ZP_07267718.1| signal recognition particle protein [Lactobacillus iners AB-1]
 gi|325911788|ref|ZP_08174192.1| signal recognition particle protein [Lactobacillus iners UPII
           143-D]
 gi|259167080|gb|EEW51575.1| signal recognition particle protein [Lactobacillus iners DSM 13335]
 gi|325476294|gb|EGC79456.1| signal recognition particle protein [Lactobacillus iners UPII
           143-D]
          Length = 475

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 149/307 (48%), Gaps = 18/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S KL++ +  +    ++ +        E+   L+ +D+   V +K ++ +  +  
Sbjct: 2   AFENLSEKLQKALRKLTGKGKISENDINQASREIRLALLEADVNFKVVKKFIKTIKAEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAIDQLK            SE  +D  A+      QA
Sbjct: 121 LANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLDVPVY-SENNTDVVAIVENGLMQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +IIDTAGRL  +  LM  +  ++ V    +      ++ V DA TGQ A    
Sbjct: 180 DRNHNDYVIIDTAGRLEIDDQLMDELKNIVDVAHPEN------IILVADAMTGQVAATVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F++    TGLI+TK+DG  RGG  + I     +P+ F G GE + +L+ F     ++ 
Sbjct: 234 EGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDRMASR 293

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 294 ILGMGDM 300


>gi|212223269|ref|YP_002306505.1| signal recognition particle protein Srp54 [Thermococcus onnurineus
           NA1]
 gi|229558607|sp|B6YSS1|SRP54_THEON RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|212008226|gb|ACJ15608.1| signal recognition particle, SRP54 subunit [Thermococcus onnurineus
           NA1]
          Length = 448

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRY 75
                   L   +  +  S  +D+   +E    ++  LI++D+ V +   + + +  +  
Sbjct: 2   ALEKLGKALNNALRKLARSSTVDEATIKEVVRDIQRALIQADVNVRLVLDLTKRIEKRAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++        + ++  V E + K L   +KP   +   +P V+L VG+ G GKTT I K
Sbjct: 62  EEEPPTGVSKKEHIIKIVYEELTKFLGTEAKPI--EIKEKPTVLLTVGIQGSGKTTSIAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++     G KV L   DT+R  A  QLK   +    +        DA  LA E  +  +
Sbjct: 120 LARYFQKRGYKVGLVCSDTWRPGAYQQLKQLVEPFGIEVFGDPEEKDAIKLAKEGVEHFR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K VD++I+D+AGR      L+  + ++   +K      PH V+ V+D T GQ A  Q  
Sbjct: 180 EKGVDIIIVDSAGRHKEEKSLIEEMKQISAAIK------PHEVILVIDGTIGQQAYNQAL 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TK+DG+A+GGG +  V     P+ F+GVGE I+DLEPF  K F + +
Sbjct: 234 AFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGERIDDLEPFDPKRFVSRL 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGLGD 298


>gi|171316239|ref|ZP_02905462.1| signal recognition particle protein [Burkholderia ambifaria MEX-5]
 gi|171098653|gb|EDT43450.1| signal recognition particle protein [Burkholderia ambifaria MEX-5]
          Length = 455

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++    +    + +     P VIL+ G+ G GKTT +
Sbjct: 62  EEVISSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVTPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKHKKKVLTVSCDVYRPAAIMQLKTVSEQVGADFFPSTPDQKPVDIAVAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRL  +  +M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGTLKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|167564167|ref|ZP_02357083.1| signal recognition particle protein [Burkholderia oklahomensis
           EO147]
          Length = 455

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V +  + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVRDFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           +DV       Q ++  V + +  ++    +    + +     P +IL+ G+ G GKTT +
Sbjct: 62  EDVVGSLSPGQALVGVVQKELTAVIGGDYEGKAVELNLAVTPPAIILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFPSTPEQKPVDIANAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   LK      P   L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEAMMQEITALHAALK------PVETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEIFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|309809516|ref|ZP_07703374.1| signal recognition particle protein [Lactobacillus iners SPIN
           2503V10-D]
 gi|312874520|ref|ZP_07734545.1| signal recognition particle protein [Lactobacillus iners LEAF
           2053A-b]
 gi|308170188|gb|EFO72223.1| signal recognition particle protein [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089911|gb|EFQ48330.1| signal recognition particle protein [Lactobacillus iners LEAF
           2053A-b]
          Length = 475

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 149/307 (48%), Gaps = 18/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S KL++ +  +    ++ +        E+   L+ +D+   V +K ++ +  +  
Sbjct: 2   AFENLSEKLQKALRKLTGKGKISENDINQASREIRLALLEADVNFKVVKKFIKTIKAEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAIDQLK            SE  +D  A+      QA
Sbjct: 121 LANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLDVPVY-SENNTDVVAIVKNGLMQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +IIDTAGRL  +  LM  +  ++ V    +      ++ V DA TGQ A    
Sbjct: 180 DRNHNDYVIIDTAGRLEIDDQLMDELKNIVDVAHPEN------IILVADAMTGQVAATVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F++    TGLI+TK+DG  RGG  + I     +P+ F G GE + +L+ F     ++ 
Sbjct: 234 EGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDRMASR 293

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 294 ILGMGDM 300


>gi|294782274|ref|ZP_06747600.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           1_1_41FAA]
 gi|294480915|gb|EFG28690.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           1_1_41FAA]
          Length = 369

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 121/297 (40%), Positives = 181/297 (60%), Gaps = 3/297 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +++    +       + +I +S+ ++DD + EELEDLLI+SD+G+ +   ++ +L  K  
Sbjct: 73  ISQRLTKSKEGFFSKLKNIFTSKSKIDDSIYEELEDLLIQSDVGLGMTTNLINDLEKKVK 132

Query: 76  AKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           A  +S    +Y  +  L+ + L+      +    +R +VIL+VGVNGVGKTT IGKL+ K
Sbjct: 133 ANKISETSEVYEILKGLMSEFLLSQDSKVHLK-DNRINVILIVGVNGVGKTTTIGKLALK 191

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G KV+L AGDTFR+AA++QL+ WA R   D V    G+D A++ Y+   +A+A K 
Sbjct: 192 YKKLGKKVLLGAGDTFRAAAVEQLEEWARRADVDIVKGREGADPASVVYDTLSKAEATKA 251

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D TTGQN L Q + F++
Sbjct: 252 DVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAKEFNS 311

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL  F AKDF   I 
Sbjct: 312 VTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIEDLIEFNAKDFVEAIF 368


>gi|237741085|ref|ZP_04571566.1| signal recognition particle protein [Fusobacterium sp. 4_1_13]
 gi|256846224|ref|ZP_05551681.1| signal recognition particle protein [Fusobacterium sp. 3_1_36A2]
 gi|229430617|gb|EEO40829.1| signal recognition particle protein [Fusobacterium sp. 4_1_13]
 gi|256717993|gb|EEU31549.1| signal recognition particle protein [Fusobacterium sp. 3_1_36A2]
          Length = 444

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + ++    I    RL +        E++  L+ +D+   V +    ++  K   
Sbjct: 2   LENLGNRFQDIFKKIRGHGRLSESNIKDALREVKMSLLEADVNYKVVKDFTNKISEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V++ + ++L   S        + P +I++ G+ G GKTT   KL
Sbjct: 62  TEVIRGINPAQQFIKLVNDELVELLGGTSSKLTKGLRN-PTIIMLAGLQGAGKTTFAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K++L   D +R AAI QL++   +   D    E   D   +A  A ++A+ 
Sbjct: 121 AKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVDVYSEEDTKDVVGIATRAIEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +I+DTAGRLH +  LM  + ++ R +K      P  +L V+DA  GQ+A+   E 
Sbjct: 181 INATYMIVDTAGRLHIDETLMEELKELKRAIK------PQEILLVVDAMIGQDAVNLAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+I+TK+DG  RGG  + I      P+ F+GVGE +ND+E F      + I 
Sbjct: 235 FNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKFIGVGEKLNDIEIFHPDRLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|254523884|ref|ZP_05135939.1| cell division protein [Stenotrophomonas sp. SKA14]
 gi|219721475|gb|EED40000.1| cell division protein [Stenotrophomonas sp. SKA14]
          Length = 437

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 114/262 (43%), Positives = 162/262 (61%), Gaps = 1/262 (0%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
             LI +D+GV     +VE L  +  +++      +L  +   +  +L P++KP   D + 
Sbjct: 170 TALITADVGVGATTDLVEGLRKRMKSREFADANALLAALRSELIAILQPVAKPLVIDRNA 229

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W +R     
Sbjct: 230 KPFVVLTVGVNGVGKTTTIGKLAKRFKDDGHSLMLAAGDTFRAAAVAQLQAWGERNGVAV 289

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +DAA++A++A +  +A+   VLI DTAGRLH  S LM  +GK+ RVL ++DP A
Sbjct: 290 VAQGQNADAASVAFDALQAGKARGTSVLIADTAGRLHTQSGLMNELGKIRRVLGKIDPTA 349

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V+D TTGQNAL Q+  F+A    TGL++TK+DGTA+GG +  +     IP+ F 
Sbjct: 350 PHEVLMVIDGTTGQNALSQLRQFNAAVNVTGLVVTKLDGTAKGGVVFALAREFGIPIRFA 409

Query: 290 GVGEGINDLEPFVAKDFSAVIT 311
           G+GE   DL  F  + F   + 
Sbjct: 410 GIGERPEDLRVFDPEAFVDALL 431


>gi|126658775|ref|ZP_01729919.1| signal recognition particle protein [Cyanothece sp. CCY0110]
 gi|126619873|gb|EAZ90598.1| signal recognition particle protein [Cyanothece sp. CCY0110]
          Length = 488

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++    +    ++ +       +E+   L+ +D+ + V +  + ++      
Sbjct: 2   FDALADRLEDAWKKLRGQDKITEANMQDALKEVRRALLEADVNLQVVKTFIADVEKAAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+++  V + + K++   + P      + P VIL+ G+ G GKTT   KL
Sbjct: 62  AEVIAGVNPGQQLIKIVYDELVKVMGESNVPL-AQAENAPTVILMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       ++ A D +R AAIDQL    ++           ++   +A +  ++A+ 
Sbjct: 121 ALYLRKQQRSALMVATDIYRPAAIDQLITLGEQIDVPVFELGNQANPVDIATQGVEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +D +IIDTAGRL  +  +M  + ++ + +       P   L V+DA TGQ A      
Sbjct: 181 MGIDTVIIDTAGRLQIDEEMMLELSRVKKAVN------PDDTLLVVDAMTGQEAANLTRT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TKMDG  RGG  + +      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FHDQIGVTGAILTKMDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRMASRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 SMGD 298


>gi|258511331|ref|YP_003184765.1| signal recognition particle-docking protein FtsY [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478057|gb|ACV58376.1| signal recognition particle-docking protein FtsY [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 306

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 123/302 (40%), Positives = 180/302 (59%), Gaps = 5/302 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +    +  KG   +   + + +  +   RRLDD V EE+E+ LI SD+GV  A ++V   
Sbjct: 1   MGLFDRFRKGLEKSRAAMADRLLSVFRGRRLDDSVFEEMEETLILSDVGVDTAVELV--- 57

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW--DFSHRPHVILVVGVNGVGKTTVI 128
              R            D+ +++  +++    P     +    P V+LVVGVNG GKTT I
Sbjct: 58  EAIRREARRRRIERAEDLPDVMVDVMVEFLGPPAEMAENPDGPTVVLVVGVNGAGKTTTI 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G +V+LAA DTFR+AAI+QL +W +R   D V    GSD AA+ Y+A + 
Sbjct: 118 GKLAHAYKSQGKRVILAAADTFRAAAIEQLMVWGERVGVDVVRHAQGSDPAAVVYDAIQA 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A++ D++I DTAGRL N + LM  + K+ +V +R  P APH VL V+D TTGQN L Q
Sbjct: 178 AKARRCDLVICDTAGRLQNKAHLMNELAKIRKVAERELPGAPHEVLLVIDGTTGQNGLVQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F  V   TG+++TK+DGTA+GG + PIV    IPV ++G+GEG++DL+PF  + F+ 
Sbjct: 238 ARVFKEVVRVTGIVVTKLDGTAKGGIVFPIVREEGIPVKWIGLGEGMDDLQPFDPRMFAE 297

Query: 309 VI 310
            I
Sbjct: 298 AI 299


>gi|154483579|ref|ZP_02026027.1| hypothetical protein EUBVEN_01283 [Eubacterium ventriosum ATCC
           27560]
 gi|149735489|gb|EDM51375.1| hypothetical protein EUBVEN_01283 [Eubacterium ventriosum ATCC
           27560]
          Length = 317

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 121/303 (39%), Positives = 172/303 (56%), Gaps = 6/303 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           ++ +KL  G   T   +   +  I +    +DD   EELE++LI SDIGV   ++I++ L
Sbjct: 3   NFFKKLVSGLTKTRNNIVSNLNSIFNGFSSIDDDFYEELEEILIMSDIGVNTTEEILDNL 62

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGVGKTTVI 128
             +     +       +  EL+ K +          +DF +   VIL++GVNGVGKTT I
Sbjct: 63  KEQVKENKIKEP---IECKELLIKNIEEQMDLGENAYDFENEKSVILMIGVNGVGKTTSI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +  + G KV+LAA DTFR+AA DQLK WA+R + D V    GSD  ++ Y+A   
Sbjct: 120 GKLASQFKNNGKKVVLAAADTFRAAATDQLKEWANRANVDIVMGAEGSDPGSVLYDAISS 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  D+L+ DTAGRLHN   LM  + K+ R++++           VLDATTGQNAL Q
Sbjct: 180 AKNKNADILLCDTAGRLHNKKNLMEELKKLDRIIEKEYNGCRRENFIVLDATTGQNALAQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F      TG+I+TKMDG+A+GG  I I     IPV ++GVGE I+DL+ F +  F  
Sbjct: 240 ARQFKECTDITGVILTKMDGSAKGGIAIAIQSELGIPVKYIGVGEQIDDLQKFDSHQFVE 299

Query: 309 VIT 311
            + 
Sbjct: 300 ALF 302


>gi|227823738|ref|YP_002827711.1| signal recognition particle protein [Sinorhizobium fredii NGR234]
 gi|227342740|gb|ACP26958.1| signal recognition particle protein [Sinorhizobium fredii NGR234]
          Length = 518

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   +  +     L +        E+   L+ +D+ + V +   E++  K   
Sbjct: 2   FESLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTEKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + +  ML       + + +  P V+++VG+ G GKTT  GK+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELIAMLGSEGVTIDLN-APAPVVVMMVGLQGSGKTTTTGKI 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+++     KV++A+ DT R AA +QL+    +T  D +    G     +A  A + A+
Sbjct: 121 AKRLTTRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPVIAGQSPTDIAARAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGR H +  LM  + ++ R         PH +L V DA TGQ+A+    
Sbjct: 181 LGGHDIVILDTAGRTHIDEPLMIEMAEIKR------KSNPHEILLVADALTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +GVGE +++LE F  +  +  I
Sbjct: 235 NFDDRVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMDELEEFHPRRVADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|150004753|ref|YP_001299497.1| putative signal recognition protein [Bacteroides vulgatus ATCC
           8482]
 gi|254883142|ref|ZP_05255852.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294775183|ref|ZP_06740709.1| signal recognition particle protein [Bacteroides vulgatus PC510]
 gi|319641812|ref|ZP_07996491.1| hypothetical protein HMPREF9011_02089 [Bacteroides sp. 3_1_40A]
 gi|149933177|gb|ABR39875.1| putative signal recognition protein [Bacteroides vulgatus ATCC
           8482]
 gi|254835935|gb|EET16244.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294450995|gb|EFG19469.1| signal recognition particle protein [Bacteroides vulgatus PC510]
 gi|317386568|gb|EFV67468.1| hypothetical protein HMPREF9011_02089 [Bacteroides sp. 3_1_40A]
          Length = 440

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRKALLDADVNYKVAKGFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +     +   RP VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTALMGGETAELVLE--GRPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      K +L A D +R AAI+QL++  ++            +   +A  A  +A+
Sbjct: 120 ARMLKTKKNRKPLLVACDVYRPAAIEQLRVLGEQIEVPVYSELDSKNPVQIALNAIHEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  + + +       P   L V+D+ TGQ+A+    
Sbjct: 180 AKGYDLVIVDTAGRLAIDEQMMNEIEAIKKAVN------PDETLFVVDSMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFNGVVLTKLDGDTRGGAALSIRTVVNKPIKFVGTGEKLDAIDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|319938300|ref|ZP_08012697.1| signal recognition particle-docking protein ftsY [Coprobacillus sp.
           29_1]
 gi|319806593|gb|EFW03251.1| signal recognition particle-docking protein ftsY [Coprobacillus sp.
           29_1]
          Length = 326

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 120/300 (40%), Positives = 182/300 (60%), Gaps = 10/300 (3%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K   G   +S      I ++ +  R +DD   EELE++LI SD+GV++   I++E+  +
Sbjct: 20  DKYVAGLDKSSSSFSAKINELAARYREIDDDYFEELENVLIMSDVGVSMVMTIIDEIKKE 79

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
              +++   +++ D+  +I KM +       ++   N+D      VIL+VGVNG GKTT 
Sbjct: 80  VRLQNIKNPQMINDI--IIDKMFVIYANDSYMTTKINYD-DQDLTVILMVGVNGAGKTTT 136

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL+  M   G  VM+AAGDTFR+ AIDQL +WA+R   + +  + G D +++ ++A  
Sbjct: 137 IAKLAHMMLSEGKTVMVAAGDTFRAGAIDQLAVWAERLGIECIKGKEGGDPSSVVFDALN 196

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           QA+ K VDVLI DTAGRL N   LM  + KM R++KR+ P  P   L V+DATTGQN + 
Sbjct: 197 QAKDKGVDVLICDTAGRLQNKVNLMNELEKMNRIIKRVVPSGPQETLLVIDATTGQNGVS 256

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F  +   TG+++TKMDGTA+GG ++ I  T  IPV F+G+GE ++DL+ F  + + 
Sbjct: 257 QAQEFSKITDITGIVLTKMDGTAKGGIVLSIKDTLNIPVKFMGLGESMDDLQEFDLEQYI 316


>gi|241206757|ref|YP_002977853.1| signal recognition particle protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860647|gb|ACS58314.1| signal recognition particle protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 525

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FENLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       +   +  P VI++VG+ G GKTT   K+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELIEMLGGEGVGVDLHAAA-PVVIMMVGLQGSGKTTTSAKI 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + +++     KV++A+ DT R AA +QL+    + + D +    G     +A  A + A+
Sbjct: 121 AHRLTTREKKKVLMASLDTRRPAAQEQLRQLGAQANIDTLPVISGQSPTDIAARAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGGHDVVILDTAGRTHIDEPLMVEMADIKKRSN------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +GVGE +++LE F  +  +  I
Sbjct: 235 SFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|163752849|ref|ZP_02159973.1| signal recognition particle protein [Kordia algicida OT-1]
 gi|161326581|gb|EDP97906.1| signal recognition particle protein [Kordia algicida OT-1]
          Length = 443

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL + +  +     + +       +E+   L+ +D+   +A+   + +  K   
Sbjct: 2   FNNLSEKLDKAMHVLKGHGSITEVNVAETLKEVRRALLDADVNFKIAKDFTKRVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N   S +P +IL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTTLQPGQLMVKIVKDELTDLMGGDAAGINL--SGKPSIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +    K +L A D +R AAIDQL +  D+   D    +  +D  A+A      A+
Sbjct: 120 ANYLKNKKTKKPLLVACDVYRPAAIDQLHVVGDQIKVDVYSDKGNNDPVAIAQAGIAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRL  +  +M  I  + + ++      P   L V+D+ TGQ+A+   +
Sbjct: 180 QNGHNVVIIDTAGRLAVDEAMMTEIANIHKAIE------PQETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +    G+I+TK+DG  RGG  I I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 AFNDILNFDGVILTKLDGDTRGGAAISIKSVVNKPIKFIGTGEKMEAIDVFYPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|162329941|pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
           Thaliana
          Length = 359

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 181/311 (58%), Gaps = 6/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL--DDGVREELEDLLIRSDIGVAVA 63
           +  ++ S + K+  GF+ T   L   I +++    L   D V +ELE+ L+ SD G  + 
Sbjct: 49  IKEKAKSDVEKVFSGFSKTRENL-AVIDELLLFWNLAETDRVLDELEEALLVSDFGPKIT 107

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
            +IVE L     +  +     + D + E + +ML   +          +P VI++VGVNG
Sbjct: 108 VRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNG 167

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT +GKL+ ++ + G KV++AAGDTFR+AA DQL+IWA+RT  + V +E   + AA 
Sbjct: 168 GGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +  +A K+ + +  DV++ DT+GRLH N  LM  +    + + ++   AP+ +L VLD  
Sbjct: 228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGN 287

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TG N L Q   F+ V G TGLI+TK+DG+ARGG ++ +V    IPV F+GVGE + DL+P
Sbjct: 288 TGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQP 347

Query: 301 FVAKDFSAVIT 311
           F  + F   I 
Sbjct: 348 FDPEAFVNAIF 358


>gi|115350547|ref|YP_772386.1| signal recognition particle protein [Burkholderia ambifaria AMMD]
 gi|170699971|ref|ZP_02890998.1| signal recognition particle protein [Burkholderia ambifaria
           IOP40-10]
 gi|172059579|ref|YP_001807231.1| signal recognition particle protein [Burkholderia ambifaria MC40-6]
 gi|115280535|gb|ABI86052.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           ambifaria AMMD]
 gi|170135119|gb|EDT03420.1| signal recognition particle protein [Burkholderia ambifaria
           IOP40-10]
 gi|171992096|gb|ACB63015.1| signal recognition particle protein [Burkholderia ambifaria MC40-6]
          Length = 455

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++    +    + +     P VIL+ G+ G GKTT +
Sbjct: 62  EEVISSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVTPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKHKKKVLTVSCDVYRPAAIMQLKTVSEQVGADFFPSTPDQKPVDIAVAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRL  +  +M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHGTLKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|77919948|ref|YP_357763.1| cell division membrane protein [Pelobacter carbinolicus DSM 2380]
 gi|77546031|gb|ABA89593.1| signal recognition particle-docking protein FtsY [Pelobacter
           carbinolicus DSM 2380]
          Length = 472

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 127/302 (42%), Positives = 184/302 (60%), Gaps = 3/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S  +++  G A T   L   I  ++   + +D+ + EELE++LI +D+G+   Q++++ L
Sbjct: 168 SLFQRMRTGLAKTQASLVGRIDALLRGCQGVDEELLEELEEILITADLGMKTTQQLIQSL 227

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +     ++   VL + +   I   LM  S P +   +  P VI+VVGVNGVGKTT IG
Sbjct: 228 EMRLDKGQLNDPDVLREALKGEIRDRLMQESAPLDPQRA-TPFVIMVVGVNGVGKTTTIG 286

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++ AGDTFR+AA +QL++W  R   + +    GSD AA+A++A K A
Sbjct: 287 KLAHQYVQQGKKVLVGAGDTFRAAAAEQLEVWGQRAGVEVIRQAAGSDPAAVAFDAIKAA 346

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA+K DVL++DTAGRLH    LM  + K+ RVL R  P APH  L V+DATTGQNAL Q 
Sbjct: 347 QARKADVLLLDTAGRLHTKVNLMEELKKIRRVLDREMPGAPHETLLVVDATTGQNALVQA 406

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F      +GL +TK+DGTARGG L+ I     +P++++G+GEGI DL PF    F   
Sbjct: 407 RLFQEAVSVSGLALTKLDGTARGGMLVAIGGELGLPIHYVGIGEGIEDLRPFDPDLFVEA 466

Query: 310 IT 311
           + 
Sbjct: 467 LF 468


>gi|209521094|ref|ZP_03269824.1| signal recognition particle protein [Burkholderia sp. H160]
 gi|209498477|gb|EDZ98602.1| signal recognition particle protein [Burkholderia sp. H160]
          Length = 455

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V   +  ++    +    + +     P +IL+ G+ G GKTT +
Sbjct: 62  EEVIASLSPGQALVGVVQRELTAVIGGDYEGKASELNLAVTPPAIILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK   ++  ADF  SE       +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADFFPSEPNQKPVDIARAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  + ++M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEVMMQEIAALHAELKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+++TK+DG +RGG  + +      PV F+GV E ++ LE F     +
Sbjct: 236 TAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPVKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 296 SRILGMGD 303


>gi|327313674|ref|YP_004329111.1| signal recognition particle protein [Prevotella denticola F0289]
 gi|326946347|gb|AEA22232.1| signal recognition particle protein [Prevotella denticola F0289]
          Length = 447

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 142/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKSFTDTVKKKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  + + + +++   +   N    +RP +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIMHDELAELMGGEAVGLNL--VNRPAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AAI+QLK+  ++                +A  A  +A+
Sbjct: 120 ANMLKTKEHKHPLLVACDVYRPAAIEQLKVVGEQVGVPVYSEPDNKTVNEIADHAIAEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+IIDTAGRL  +  +M  I  + + +       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGNDVVIIDTAGRLAVDEDMMNEIESLKKHVT------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFNGVVLTKLDGDTRGGAALSIRTVVTKPIKFIGTGEKMEAVDVFHPGRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|295396043|ref|ZP_06806227.1| signal recognition particle protein [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971131|gb|EFG47022.1| signal recognition particle protein [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 552

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 147/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ + V +     +  +  +
Sbjct: 2   FNSLSDRLTSTFKNLRGKGRLSEADVDATIREIRRALLDADVALPVVRAFTGRVRERALS 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V++ + ++L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSEALNPGQQVVKIVNDELVQILGGKTRRIQF-AKKPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +  +   G + ML A D  R  A++QL++   R  A     E G+   D   +A ++ + 
Sbjct: 121 AHWLKSDGHRPMLVAADLQRPNAVNQLEVVGSRAGAYVYAPEPGNGVGDPVKVARDSMEV 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A++K  DV+I+DTAGRL  +  LM     +   +       P  VL V+DA  GQ+A+  
Sbjct: 181 AKSKLYDVVIVDTAGRLGIDEELMQQASDIRAAVN------PDEVLFVIDAMIGQDAVTT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG++++K+DG +RGG  + +      P+ F   GEG+ D E F     + 
Sbjct: 235 AQAFNEGVDFTGVVLSKLDGDSRGGAALSVAEVTGKPIMFASTGEGLKDFELFHPDRMAD 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|294786046|ref|ZP_06751331.1| signal recognition particle protein [Fusobacterium sp. 3_1_27]
 gi|294486268|gb|EFG33633.1| signal recognition particle protein [Fusobacterium sp. 3_1_27]
          Length = 444

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + ++    I    RL +        E++  L+ +D+   V +    ++  K   
Sbjct: 2   LENLGNRFQDIFKKIRGHGRLSESNIKDALREVKMSLLEADVNYKVVKDFTNKISEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V++ + ++L   S        + P +I++ G+ G GKTT   KL
Sbjct: 62  TEVIKGVNPAQQFIKLVNDELVELLGGTSSKLTKGLRN-PTIIMLAGLQGAGKTTFAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K++L   D +R AAI QL++   +   D    E   D   +A  A ++A+ 
Sbjct: 121 AKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVDVYSEEDTKDVVGIATRAIEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +I+DTAGRLH +  LM  + ++ R +K      P  +L V+DA  GQ+A+   E 
Sbjct: 181 INATYMIVDTAGRLHIDETLMEELKELKRAIK------PQEILLVVDAMIGQDAVNLAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+I+TK+DG  RGG  + I      P+ F+GVGE +ND+E F      + I 
Sbjct: 235 FNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKFIGVGEKLNDIEIFHPDRLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|213962455|ref|ZP_03390717.1| signal recognition particle protein [Capnocytophaga sputigena
           Capno]
 gi|213954781|gb|EEB66101.1| signal recognition particle protein [Capnocytophaga sputigena
           Capno]
          Length = 442

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 148/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL++ + ++    ++ +       +E+   L+ +D+   +A+     +  K   
Sbjct: 2   FDNLSDKLEKALHNLKGHGKITEINVAETLKEVRRALLDADVNYKIAKDFTNNVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V + + +++   +   N   S  P +IL+ G+ G GKTT  GKL
Sbjct: 62  QQVLTSLQPGQLMVKIVKDELTQLMGGDAAGINL--SGNPTIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +   K  L  A D +R AAIDQL I  ++        +  S+   +A +  + A+
Sbjct: 120 ANYLKNKKNKKPLLVACDVYRPAAIDQLHIVGEQVGVPVFSDKGNSNPVDIAQKGVQYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++V+I+DTAGRL  +  +M  I  + + L       P   L V+DA TGQ+A+   +
Sbjct: 180 ENHLNVVIVDTAGRLAVDEQMMTEISNIHKALN------PQETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V    G+I+TK+DG  RGG  I I      P+ F+G GE ++ ++ F  +  +  I
Sbjct: 234 AFNDVLNFDGVILTKLDGDTRGGAAITIKSVVNKPIKFVGTGEKMDAIDVFYPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|157362996|ref|YP_001469763.1| signal recognition particle protein [Thermotoga lettingae TMO]
 gi|157313600|gb|ABV32699.1| signal recognition particle protein [Thermotoga lettingae TMO]
          Length = 433

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 146/304 (48%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L +    +    RL +  + E +  +   L+ +D+   V ++ ++ +  K   
Sbjct: 2   FENLQERLSKIFRSLTGQGRLTEKNINEAVRQVKLSLLEADVNFKVVKEFIDSVKAKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V + +  ++         +  H P VI++VG+ G GKTT   KL
Sbjct: 62  EEVLKSFTPDQQFVKIVRDELINIMGK--SAATLNLRHHPSVIMLVGLQGSGKTTTAAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +  +G  V+L A DT+R AAIDQL+          +  +   +   +  +A + ++ 
Sbjct: 120 ANYLRKSGRTVLLVAADTYRPAAIDQLEKLGKSIQIPVLTGD-RKNPLIIVQQALEYSKN 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            + + LI DTAGRLH +  +M  + ++ ++        P  +L V+DA  GQ+A+     
Sbjct: 179 SQYNTLIFDTAGRLHIDEEMMEELQQIKQLSN------PDEILMVVDAMIGQDAVNSALE 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG I+TKMDG ARGG ++ I      PV F+GVGE I+  E F     +A I 
Sbjct: 233 FDKRLNVTGFIVTKMDGDARGGVILSITHITGKPVKFIGVGEKIDAFEQFHPDRVAARIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|313632780|gb|EFR99743.1| signal recognition particle-docking protein FtsY [Listeria
           seeligeri FSL N1-067]
          Length = 328

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 124/309 (40%), Positives = 185/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G  
Sbjct: 8   KDKITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFE 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSH-RPHVILVVG 118
              ++VE L  +   +++S  + +    V +L+        +            VIL VG
Sbjct: 68  TVMELVEALRREVQLRNISDPKDVQEVIVEKLVDIYQGDQEEEETLHIEKDGLTVILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++ +    G KVMLAAGDTFR+ AI+QL++W +RT  D +    GSD 
Sbjct: 128 VNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIEQLEVWGERTGVDVIKQAEGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL VLD
Sbjct: 188 AAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLVLD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I    +IPV F+G+GE ++DL
Sbjct: 248 ATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELRIPVKFVGLGEQMDDL 307

Query: 299 EPFVAKDFS 307
           + F A ++ 
Sbjct: 308 QAFDANEYV 316


>gi|256832215|ref|YP_003160942.1| signal recognition particle protein [Jonesia denitrificans DSM
           20603]
 gi|256685746|gb|ACV08639.1| signal recognition particle protein [Jonesia denitrificans DSM
           20603]
          Length = 525

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 90/316 (28%), Positives = 146/316 (46%), Gaps = 28/316 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FAS S +L     ++ S  RL     D    E+   L+ +D+ V+V +     +  +  +
Sbjct: 2   FASLSDRLTSTFKNLRSKGRLSEADIDATIREIRRALLDADVAVSVVRDFTGAVRERALS 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V + +  +L   ++P        P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVHDELVTVLGGTARPLQ-RAKTGPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD------------AA 179
           +  + + G   ML A D  R  A+ QLKI  +R          G+               
Sbjct: 121 AVHLREQGHTPMLIAADLQRPNAVQQLKIVGERAGVPVYAPHPGNQGEGATPGLSAGDPV 180

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A   ++ A+A++ D +I+DTAGRL  ++ LM     +       D  +PH +L V+DA
Sbjct: 181 AIARAGYETAKARQHDTVIVDTAGRLGVDAELMEQAADI------RDAVSPHEILFVIDA 234

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             GQ+A+     F    G TG++++K+DG ARGG  + +      P+ F   GE + D E
Sbjct: 235 MIGQDAVATARAFADGVGFTGVVLSKLDGDARGGAALSVAKVTGQPILFASTGENLTDFE 294

Query: 300 PFVAKDFSAVITGCLD 315
            F     +  I    D
Sbjct: 295 VFHPDRMANRILDMGD 310


>gi|296160511|ref|ZP_06843327.1| signal recognition particle protein [Burkholderia sp. Ch1-1]
 gi|295889260|gb|EFG69062.1| signal recognition particle protein [Burkholderia sp. Ch1-1]
          Length = 455

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 145/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V   +  ++    +    + +     P VIL+ G+ G GKTT +
Sbjct: 62  EEVISSLSPGQALVGVVQRELTAIIGGDYEGKAVELNLAVTPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK   ++  ADF  SE       +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADFFPSEPDQKPVDIARAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEAMMKEITALHTELKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|294507645|ref|YP_003571703.1| signal recognition particle protein [Salinibacter ruber M8]
 gi|294343973|emb|CBH24751.1| signal recognition particle protein [Salinibacter ruber M8]
          Length = 461

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 144/308 (46%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+  +  +    R+D+        E+   L+ +D+   VA++    +      
Sbjct: 2   FEGLSQKLEGALQSVTGQGRIDEVNVAETMREIRRALLNADVNYQVAKEFTANVKEAATG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       +++   + + + ++L    +         P VILV G+ G GKTT   KL
Sbjct: 62  EDVLTSVTPGEQLTKIMHDELTRVLGGEHEGIEM-AETPPTVILVAGLQGSGKTTFCAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA----LAYEAFK 187
           ++     G   +LAA D +R AA+DQLK  AD+ +A     E   +       +A EA  
Sbjct: 121 ARHFRKEGHAPLLAASDVYRPAAVDQLKTLADQVNAPVYSIEDDGEIVEDAVRVANEAVA 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +AQ    D++IIDTAGR+H +  +M  +  +   +      AP+  L V+D+ TGQ+A+ 
Sbjct: 181 EAQNTARDIVIIDTAGRMHIDEAMMQEVEDIKTTV------APNETLFVVDSMTGQDAVN 234

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+      G++++K+DG  RGG  + I      P+ F   GE ++ L PF     +
Sbjct: 235 TAKEFNERIDYDGVVLSKLDGDTRGGAALSIRTVVNKPIKFASTGEKLDALTPFYPDRMA 294

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 295 QRILGMGD 302


>gi|289435146|ref|YP_003465018.1| cell division ABC transporter, substrate-binding protein [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289171390|emb|CBH27934.1| cell division ABC transporter, substrate-binding protein [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|313637356|gb|EFS02837.1| signal recognition particle-docking protein FtsY [Listeria
           seeligeri FSL S4-171]
          Length = 328

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 124/309 (40%), Positives = 184/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G  
Sbjct: 8   KDKITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFE 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSH-RPHVILVVG 118
              ++VE L  +   +++S  + +    V +L+        +            VIL VG
Sbjct: 68  TVMELVEALRREVQLRNISDPKDVQEVIVEKLVDIYQGDQEEEETLHIEKDGLTVILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++ +    G KVMLAAGDTFR+ AI+QL++W +RT  D +    GSD 
Sbjct: 128 VNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIEQLEVWGERTGVDVIKQAEGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL VLD
Sbjct: 188 AAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLVLD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE ++DL
Sbjct: 248 ATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELHIPVKFVGLGEQMDDL 307

Query: 299 EPFVAKDFS 307
           + F A ++ 
Sbjct: 308 QAFDANEYV 316


>gi|300772045|ref|ZP_07081915.1| signal recognition particle protein [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760348|gb|EFK57174.1| signal recognition particle protein [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 445

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL      +     + +       +E+   L+ +D+    A+   +++  K   
Sbjct: 2   FQNLQDKLDRAFKVLKGQGNITEINVAETMKEIRKALLDADVNYKTAKSFTDDVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q +   +++ + +++         D S  P VIL+ G+NG GKTT  GKL
Sbjct: 62  QNVLTSISPGQLLTKIMNDELTELMGGAVTEL--DTSKNPTVILIAGLNGAGKTTFSGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + D  G K +L AGD +R AAIDQL++   +       +   +D  A++    ++A+
Sbjct: 120 ANYLKDKKGKKPLLVAGDVYRPAAIDQLEVLGGQVGVPVFVNRESNDPIAISQAGVEEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRL  +  LM  I  +    K      P  +L V+D+ TGQ+A+   +
Sbjct: 180 RNGHNVVIIDTAGRLAIDEALMVEITAVKEATK------PQEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG  RGG  + I      P+ F+G GE +  L+ F     ++ I
Sbjct: 234 AFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVNKPIKFIGTGEKMEALDVFYPDRMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|299536774|ref|ZP_07050082.1| signal recognition particle-like (SRP) component [Lysinibacillus
           fusiformis ZC1]
 gi|298727786|gb|EFI68353.1| signal recognition particle-like (SRP) component [Lysinibacillus
           fusiformis ZC1]
          Length = 452

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 155/306 (50%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  I  I    ++ +     +  E+   LI +D+ + V ++ V+++  +  
Sbjct: 2   AFEGLAERLQGTIQKIKGKGKVSEQDVKEMMREVRFALIEADVNLKVVKEFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + +++     P  ++ +  P VI++VG+ G GKTT  GK
Sbjct: 62  GVDVMQSLTPGQQVIKIVQDELTELMGGEQSPIKFN-TKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AA+ QL+    + S              +A +A + A
Sbjct: 121 LANVLRKKYNRKPLLVAADVYRPAAVQQLQTLGKQLSLPVFALGTEVSPVEIARQAIELA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV+IIDTAGRLH +  LM  +  +  + +      P  V  V+DA TGQ+A+   
Sbjct: 181 KEEHHDVVIIDTAGRLHIDEDLMQELKDIRSLKE------PDEVFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+   G TG+++TK+DG  RGG  + I    + P+ F+G+GE ++ LEPF  +  ++ 
Sbjct: 235 ESFNEAIGITGVVLTKLDGDTRGGAALSIRSVTQKPIKFVGMGEKMDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|298373234|ref|ZP_06983223.1| signal recognition particle protein [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274286|gb|EFI15838.1| signal recognition particle protein [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 440

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+    A+   +E+  K   
Sbjct: 2   FENLSERLERSFKILKGQGKITEINVAETLKDVRKALLDADVNYKTAKTFTDEVKNKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       + ++  V + +  ++       N   S  P V+L+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAIKPNELMVKIVHDELAALMGNEHTELNLKGS--PAVVLMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +    G   +L A D +R AAI+QLK    + +      E  ++   +A  A K A+
Sbjct: 120 ANMLKSKRGRHPLLVACDVYRPAAIEQLKTLGSQINVPVYTEEGNNNPVGIAENAIKHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++IIDTAGRL  +  +M  I  +   +       P  +L V+DA TGQ+A+   +
Sbjct: 180 KNGNDIVIIDTAGRLAVDEQMMTEIANIKAAVS------PQEILFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  I I      P+ F+G+GE ++ ++ F  K  +  I
Sbjct: 234 AFNDRLNFDGVVLTKLDGDTRGGAAISIRSVVDKPIKFVGIGEKLDAIDVFYPKRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|283782239|ref|YP_003372994.1| signal recognition particle-docking protein FtsY [Pirellula staleyi
           DSM 6068]
 gi|283440692|gb|ADB19134.1| signal recognition particle-docking protein FtsY [Pirellula staleyi
           DSM 6068]
          Length = 343

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 122/316 (38%), Positives = 179/316 (56%), Gaps = 5/316 (1%)

Query: 2   SNQKVAS--ESLSWIRKLTKGFASTSLKLKEGITDIISS--RRLDDGVREELEDLLIRSD 57
           S++K A   + +    +L      T+  L   I D+     R +DD + + L  +L+++D
Sbjct: 26  SSEKPAEPAQPVGIFARLKSALKKTTDLLNTDIRDLFKKEGRLVDDEMLDSLYSILVKTD 85

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +GV  A +I + + T    + V +  V+  V   + +++    +P  +  +  P V+LVV
Sbjct: 86  MGVGPAGRIRDRVKTDFRGRVVHLTDVIASVKSELRELVAQPLQPITY-AAEGPTVVLVV 144

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNG GKTT I KL+      G  V+L AGDTFR+AA +QL IWA+R  A+ V  E G D
Sbjct: 145 GVNGSGKTTSIAKLTSYFRQQGKSVVLGAGDTFRAAACEQLTIWAERLGANIVKGEAGGD 204

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+A+ A   A A+K DV IIDTAGRL   + LM  + K+ RV+ +  P APH V+ VL
Sbjct: 205 PAAVAHRAVATAIAEKADVCIIDTAGRLQTQTNLMQQLEKIHRVIGKQIPEAPHEVILVL 264

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DAT GQNA+ Q + F   A  TG+++ K+DG+A+GG +IPI     IPV F+G+GE   D
Sbjct: 265 DATAGQNAISQAQGFSTAAHCTGIVLAKLDGSAKGGVVIPIREKFSIPVKFVGLGEKATD 324

Query: 298 LEPFVAKDFSAVITGC 313
           L  F +  F   +   
Sbjct: 325 LAIFDSDQFVDALFEM 340


>gi|148272543|ref|YP_001222104.1| signal recognition particle protein [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830473|emb|CAN01408.1| signal recognition particle protein [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 523

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 143/307 (46%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L E   ++    +L     DG   E+   L+ +D+ + V +     +  +   
Sbjct: 4   FGTLSDRLAETFKNLRGKGKLSAADVDGTVREIRRALLEADVALDVVKAFTASVRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L    +   +     P VI++ G+ G GKTT+ GKL
Sbjct: 64  GEVSQALNPAQQVVQIVNEELVGILGGQQRRIQF-AKKPPTVIMLAGLQGAGKTTLAGKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---GSDAAALAYEAFKQ 188
            K ++  G   ML A D  R  A+ QL++  ++        E      +   +  +A K 
Sbjct: 123 GKWLAKDGHTPMLVAADLQRPNAVQQLQVVGEQAGVPVFAPEPGNGKGNPVRVTKDAMKH 182

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A  K+  V+IIDTAGRL  ++ LM     + +         P  VL V+DA  GQ+A+  
Sbjct: 183 AIDKQYSVVIIDTAGRLGVDAELMKQAADIRKATD------PDEVLFVIDAMIGQDAVAT 236

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG++++K+DG ARGG  + +      P+ F   GEG++D EPF     ++
Sbjct: 237 AKAFQDGVDFTGVVLSKLDGDARGGAALSVASVTGRPIMFASTGEGLDDFEPFHPDRMAS 296

Query: 309 VITGCLD 315
            I    D
Sbjct: 297 RILDLGD 303


>gi|237737651|ref|ZP_04568132.1| signal recognition particle protein [Fusobacterium mortiferum ATCC
           9817]
 gi|229419531|gb|EEO34578.1| signal recognition particle protein [Fusobacterium mortiferum ATCC
           9817]
          Length = 449

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + +E    +    +L +       +E++  L+ +D+   V +    ++  K   
Sbjct: 2   LDNLGSRFQEIFKKVRGHGKLSESNIKDALKEVKMSLLEADVNYKVVKDFTAKIQEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+ +  V++ + ++L   +        + P V+++ G+ G GKTT   KL
Sbjct: 62  TDVLKGINPGQQFIKIVNDELVELLGGTNARLTKGVRN-PTVLMLAGLQGAGKTTFAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              +   G KV++   D +R AAI QL++  ++T  +    E   DA  +      +A+ 
Sbjct: 121 GNYLKKQGEKVLMVGADVYRPAAIKQLQVLGEQTGIEVYSEENHQDAVGICERGLAKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +IIDTAGRLH +  LM  + ++ R+        P  +L V+DA  GQ+A+   E 
Sbjct: 181 LGSTYMIIDTAGRLHIDEKLMDELKEIKRL------TRPQEILLVVDAMIGQDAVNLAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ V    G+++TK+DG  RGG  + I      P+ F+GVGE I+D+E F  +   + I 
Sbjct: 235 FNNVLNIDGVVLTKLDGDTRGGAALSIKAVVGKPIKFVGVGEKIDDIELFHPERLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|256390708|ref|YP_003112272.1| signal recognition particle protein [Catenulispora acidiphila DSM
           44928]
 gi|256356934|gb|ACU70431.1| signal recognition particle protein [Catenulispora acidiphila DSM
           44928]
          Length = 515

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 143/308 (46%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL     D     +   L+ +D+ +   +  +  +  +   
Sbjct: 2   FDTLSDRLATTFKNLRGKGRLSPQDIDDTLRAIRQALLEADVSLQAVRPFIAAVRERAEG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSKALNPAQQIIKIVNEELVAILGGETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++ +   G   +L A D  R  A+ QL++  +R        E G+   +   +A ++   
Sbjct: 121 ARWLKSEGHTPILVAADLQRPNAVTQLQVVGERAGVPVFAPEPGNGVGNPVKVAKDSIDF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+I+DTAGRL  ++ LM     +       D  +P  VL V+DA  GQ+A+  
Sbjct: 181 AKTKLHDVVIVDTAGRLGIDAELMKQAADI------RDAVSPDEVLFVVDAMIGQDAVIT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F    G  G+++TK+DG ARGG  + +      PV F   GE + D + F  +  + 
Sbjct: 235 AQAFMDGVGFDGVVLTKLDGDARGGAALSVRQVTGKPVMFASSGEKLEDFDVFHPERMAG 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|255281051|ref|ZP_05345606.1| signal recognition particle-docking protein FtsY [Bryantella
           formatexigens DSM 14469]
 gi|255268499|gb|EET61704.1| signal recognition particle-docking protein FtsY [Bryantella
           formatexigens DSM 14469]
          Length = 311

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 127/310 (40%), Positives = 180/310 (58%), Gaps = 4/310 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            E   + R+L +G + T   +  GI  I S    +D+   EE+E+ LI  D+G+     I
Sbjct: 2   EEKKGFFRRLAEGLSKTRDNIVSGIDSIFSGFSSIDEDFYEEIEETLIMGDLGINATTAI 61

Query: 67  VEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E+L  K     +         + E I + +        ++F +R  V+LV+GVNGVGKT
Sbjct: 62  IEDLKKKVKENHIKEPSECKRYLIESIRQQME--VTETAYEFENRTSVVLVIGVNGVGKT 119

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL+ K+ D G KV+LAA DTFR+AA +QL  WA+R   + +  + GSD A++ Y+A
Sbjct: 120 TSVGKLAGKLKDQGKKVVLAAADTFRAAAGEQLSEWANRAGVEIISGQEGSDPASVVYDA 179

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+  DVL+ DTAGRLHN   LM  +GK+ R+L++  P A    L VLD TTGQNA
Sbjct: 180 VAAAKARHADVLLCDTAGRLHNKKNLMNELGKINRILEKEYPEAYRETLVVLDGTTGQNA 239

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q   F  V   TG+I+TK+DGTA+GG  I I     IPV ++GVGE I DL+ F A++
Sbjct: 240 LVQAREFAEVTNITGIILTKLDGTAKGGIAIAIHSELGIPVKYIGVGESIEDLQKFNAEE 299

Query: 306 FSAVITGCLD 315
           F   +    D
Sbjct: 300 FVNALFLTDD 309


>gi|218441933|ref|YP_002380262.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 7424]
 gi|218174661|gb|ACK73394.1| signal recognition particle-docking protein FtsY [Cyanothece sp.
           PCC 7424]
          Length = 461

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 105/315 (33%), Positives = 184/315 (58%), Gaps = 5/315 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           + + V    ++W+++L +G   T   L   +  I+    L++    E+E LL+++D+G+ 
Sbjct: 145 AAEDVTEAEINWLKRLREGLGKTRRSLVNQLKAIVGQGPLNEDAVMEIEALLLQADVGIE 204

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSHRP-HVILVV 117
               I+E L  K   + +  ++ +  + E+I ++L    K      ++      ++ L+ 
Sbjct: 205 ATDYIIEALQGKLREESLPPEQAIEYLKEIIREILDRPLKNVDNITFEPEKEVLNIWLLT 264

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT IGKL+   + +G   ++AA DTFR+AA++Q+KIW +R+  + + +    +
Sbjct: 265 GVNGAGKTTTIGKLAHMANQSGYSCLIAAADTFRAAAVEQVKIWGERSGTEVIANPGKNT 324

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++    AQ+++VD+L++DTAGRL N   LM  + K+ R++ +  P+A    L V
Sbjct: 325 DPAAVVFDGISAAQSRQVDLLLVDTAGRLQNKKNLMDELAKIRRIVDKKAPNAKVESLLV 384

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN LRQ ++F   A  +G+++TK+DGTA+GG  + +     +P+ F+G GEGI 
Sbjct: 385 LDATLGQNGLRQAQVFSEAAKLSGVVLTKLDGTAKGGVALAVAQQLNLPIRFIGAGEGIE 444

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF + +F   + 
Sbjct: 445 DLRPFSSYEFVEALL 459


>gi|120609564|ref|YP_969242.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidovorax
           citrulli AAC00-1]
 gi|120588028|gb|ABM31468.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidovorax
           citrulli AAC00-1]
          Length = 459

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 144/304 (47%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ + KL   + ++    R+ +     +  E+   L+ +D+ + V +  +  +  K   +
Sbjct: 3   SALTEKLSRLVKEMRGQARITESNVQDMLREVRMALLEADVALPVVRDFIARVKEKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q ++  V+  +   +       N   +  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVLGSLKPGQTLVSIVNRELAATMGEGVSDINL-AAQPPAVILMAGLQGAGKTTTTAKLA 121

Query: 133 KKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +    KV+  +GD +R AAI+QLK    +  A++  S        +A  A   A+ 
Sbjct: 122 KHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAGAEWFPSTPEQKPLDIARAAIDHARR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  +  LM  I ++   L       P   L V+DA  GQ+A+   + 
Sbjct: 182 HYFDVLLVDTAGRLAIDEALMNEIKELHAALN------PVETLFVVDAMQGQDAVNTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG +RGG  + +      P+ F GV E I+ LE F A+  +  + 
Sbjct: 236 FKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPIKFAGVSEKIDGLEVFDAERHAGRVL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|186477391|ref|YP_001858861.1| signal recognition particle protein [Burkholderia phymatum STM815]
 gi|184193850|gb|ACC71815.1| signal recognition particle protein [Burkholderia phymatum STM815]
          Length = 455

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 145/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V +  + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVRDFISKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V   +  ++    +    + +     P +IL+ G+ G GKTT +
Sbjct: 62  EEVIGSLSPGQALVGVVQRELTAVIGGDYEGKAAELNLSVTPPAIILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK   ++  ADF  S+       +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADFFPSQPDQKPVDIARAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  + + L           L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEAMMNEIAALHKELNPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEIFYPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|227890256|ref|ZP_04008061.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849070|gb|EEJ59156.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii
           ATCC 33200]
          Length = 442

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 178/311 (57%), Gaps = 8/311 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           +++V +E      +  KG   T+      +    +  R +D+   ++LEDLLI SD+G  
Sbjct: 126 SEEVTTEDEQ--ERYDKGLEKTNHSFGARLNAFFAKFRTVDENFFDDLEDLLIESDVGFE 183

Query: 62  VAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
            A+++ + L  +   ++        Q ++  + ++  K           D S +P+V L 
Sbjct: 184 TAEELTDSLRDEAKLQNAKSHDALKQVIVEKLVDIYDKGGEGEDSKLADDPSAKPNVYLF 243

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT IGKL+K++ D+G  VM+ A DTFR+ A++QL  W  R   + +     +
Sbjct: 244 VGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVEVITGPEKA 303

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++ Y+  K+A+ + +D L++DTAGRL N   LM+ + K+ R +K++ P  P+ VL V
Sbjct: 304 DPASVVYDGVKKAKERGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPDQPNEVLLV 363

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE ++
Sbjct: 364 LDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKLVGLGEKVD 423

Query: 297 DLEPFVAKDFS 307
           DL  F A+ F+
Sbjct: 424 DLANFDAEKFA 434


>gi|14520695|ref|NP_126170.1| signal recognition particle protein Srp54 [Pyrococcus abyssi GE5]
 gi|12230641|sp|Q9V1E8|SRP54_PYRAB RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|5457911|emb|CAB49401.1| srp54 signal recognition particle, subunit SRP54 [Pyrococcus abyssi
           GE5]
          Length = 443

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 146/304 (48%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S    L   +  I  +  +D+ + +E    ++  LI++D+ V +  K+ +E+  +   
Sbjct: 3   LDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALE 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +         + ++  V E + K L   +KP   +   +P ++L+VGV G GKTT + KL
Sbjct: 63  EKPPAGISKKEHIIKIVYEELTKFLGTEAKPI--EIKEKPTILLMVGVQGSGKTTTVAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G KV +   DT+R  A  QLK   D    +        DA  LA E  +  +A
Sbjct: 121 ARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHFKA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VD++I+DTAGR      L+  +  +   +K      PH V+ V+D T GQ A  Q   
Sbjct: 181 KGVDLIIVDTAGRHKEEKDLIEEMRMISNEIK------PHEVILVIDGTIGQQAYNQALA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+D +A+GGG +  V     P+ F+G GE I+DLEPF    F + + 
Sbjct: 235 FKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GLGD 298


>gi|107021668|ref|YP_619995.1| signal recognition particle protein [Burkholderia cenocepacia AU
           1054]
 gi|116688614|ref|YP_834237.1| signal recognition particle protein [Burkholderia cenocepacia
           HI2424]
 gi|206561770|ref|YP_002232535.1| signal recognition particle protein [Burkholderia cenocepacia
           J2315]
 gi|254246394|ref|ZP_04939715.1| Signal recognition particle protein [Burkholderia cenocepacia
           PC184]
 gi|105891857|gb|ABF75022.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           cenocepacia AU 1054]
 gi|116646703|gb|ABK07344.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           cenocepacia HI2424]
 gi|124871170|gb|EAY62886.1| Signal recognition particle protein [Burkholderia cenocepacia
           PC184]
 gi|198037812|emb|CAR53756.1| signal recognition particle protein [Burkholderia cenocepacia
           J2315]
          Length = 455

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 146/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVSLPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++    +    + +     P VIL+ G+ G GKTT +
Sbjct: 62  EEVISSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVTPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK   ++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVTEQVGADFFPSTPDQKPVDIALAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHGTLKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|329919858|ref|ZP_08276796.1| signal recognition particle protein [Lactobacillus iners SPIN
           1401G]
 gi|328936948|gb|EGG33378.1| signal recognition particle protein [Lactobacillus iners SPIN
           1401G]
          Length = 475

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 149/307 (48%), Gaps = 18/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S KL++ +  +    ++ +        E+   L+ +D+   V +K ++ +  +  
Sbjct: 2   AFENLSEKLQKALRKLTGKGKISENDINQASREIRLALLEADVNFKVVKKFIKTIKAEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAIDQLK            SE  +D  A+      QA
Sbjct: 121 LANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLDVPVY-SENNTDVVAIVKNGLMQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +IIDTAGRL  +  LM  +  ++ V    +      ++ V DA TGQ A    
Sbjct: 180 DRNHNDYVIIDTAGRLEIDDQLMDELKNIVDVAHPEN------IILVADAMTGQVAATVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F++    TGLI+TK+DG  RGG  + I     +P+ F G GE + +L+ F     ++ 
Sbjct: 234 EGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDRMASR 293

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 294 ILGMGDM 300


>gi|315653407|ref|ZP_07906329.1| exopolyphosphatase [Lactobacillus iners ATCC 55195]
 gi|325913497|ref|ZP_08175863.1| signal recognition particle protein [Lactobacillus iners UPII 60-B]
 gi|315489332|gb|EFU78972.1| exopolyphosphatase [Lactobacillus iners ATCC 55195]
 gi|325477266|gb|EGC80412.1| signal recognition particle protein [Lactobacillus iners UPII 60-B]
          Length = 475

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 149/307 (48%), Gaps = 18/307 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S KL++ +  +    ++ +        E+   L+ +D+   V +K ++ +  +  
Sbjct: 2   AFENLSEKLQKALRKLTGKGKISENDINQASREIRLALLEADVNFKVVKKFIKTIKAEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAIDQLK            SE  +D  A+      QA
Sbjct: 121 LANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLDVPVY-SENNTDVVAIVKNGLMQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +IIDTAGRL  +  LM  +  ++ V    +      ++ V DA TGQ A    
Sbjct: 180 DRNHNDYVIIDTAGRLEIDDQLMDELKNIVDVAHPEN------IILVADAMTGQVAATVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F++    TGLI+TK+DG  RGG  + I     +P+ F G GE + +L+ F     ++ 
Sbjct: 234 EGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDRMASR 293

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 294 ILGMGDM 300


>gi|182680251|ref|YP_001834397.1| signal recognition particle protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636134|gb|ACB96908.1| signal recognition particle protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 551

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L      +     L++        E+   L+ +D+ + V +  V+++  +   
Sbjct: 2   FEGLSERLSGIFDALTQRGALNEEDVDIALREVRRALLEADVSLDVVRSFVDKVRNRALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V++++ + L    +P + D +  P  I++VG+ G GKTT   K+
Sbjct: 62  SNVVRSVTPGQMVVKIVNDVMIETLGKTVEPIDLDAA-PPVGIMMVGLQGAGKTTTTAKI 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+++D    KV++A+ D  R AA +QL +   + +   +    G     +A  A + A+
Sbjct: 121 AKRLTDRFKRKVLMASLDVKRPAAQEQLAVLGKQINVATLPIIAGQTPVQIAQRAEQAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+++DTAGR H +  LMA + ++          +PH +L V+D+ TGQ+A+   +
Sbjct: 181 LQGFDVVLLDTAGRTHIDEALMAEMAEIKAA------SSPHEILLVVDSLTGQDAVNLAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE I+ LE F     +  I
Sbjct: 235 NFDDRVGITGIVLTRIDGDGRGGAALSMRAVTGKPIKLIGTGEKIDALEDFYPDRIANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|37519820|ref|NP_923197.1| cell division protein FtsY-like protein [Gloeobacter violaceus PCC
           7421]
 gi|35210811|dbj|BAC88192.1| glr0251 [Gloeobacter violaceus PCC 7421]
          Length = 774

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 113/316 (35%), Positives = 185/316 (58%), Gaps = 3/316 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            + V  E +SW++KL  G   T   L   +  +     +     EELE LL+++D+G+ V
Sbjct: 457 PEDVTVEEISWLQKLRAGLGRTRRSLVNNVKALAGRGPIGPDELEELEGLLLQADVGITV 516

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRP-HVILVVGVN 120
           +++I+  L  +   + +   +V+  +   + K L      P  +       +V L+VGVN
Sbjct: 517 SERILAALQERVRREALPGDQVMPFLKSQLRKQLELEGDDPTGFAPKRGQLNVWLIVGVN 576

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           GVGKTT IGK++   + +G + ++AAGDTFR+AA++QL IW +R+    V +    +D A
Sbjct: 577 GVGKTTTIGKIAALATRSGYRTLIAAGDTFRAAAVEQLSIWGERSGVTVVANPSPKADPA 636

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+A+ V++L++DTAGRL N   LM  + K+ R++ +    A    L VLDA
Sbjct: 637 AVVFDAISAAKARDVELLLVDTAGRLQNKKNLMDELAKVRRIIDKQAIDAHIESLLVLDA 696

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN L+Q ++F   AG TG+++TK+DG+A+ G  + IV   ++P+ F+GVGE I+DL 
Sbjct: 697 TTGQNGLQQAKVFGETAGLTGVVITKLDGSAKAGIALAIVEQLQLPIRFVGVGEKIDDLR 756

Query: 300 PFVAKDFSAVITGCLD 315
           PF + +F   +    D
Sbjct: 757 PFNSYEFVEALLSDYD 772


>gi|172038385|ref|YP_001804886.1| signal recognition particle protein [Cyanothece sp. ATCC 51142]
 gi|171699839|gb|ACB52820.1| signal recognition particle protein [Cyanothece sp. ATCC 51142]
          Length = 489

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++    +    ++ +       +E+   L+ +D+ + V +  + ++      
Sbjct: 2   FDALADRLEDAWKKLRGQDKITEANMQDALKEVRRALLEADVNLQVVKTFIADVEKAAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+++  V + + K++   + P      + P VIL+ G+ G GKTT   KL
Sbjct: 62  AEVIAGVNPGQQLIKIVYDELVKVMGESNVPL-AQAENAPTVILMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       ++ A D +R AAIDQL    ++           ++   +A +  ++A+ 
Sbjct: 121 ALYLRKQQRTALMVATDIYRPAAIDQLVTLGEQIEVPVFELGNQANPVDIATQGVEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +D +IIDTAGRL  +  +M  + ++ + +       P   L V+DA TGQ A      
Sbjct: 181 MGIDTVIIDTAGRLQIDEEMMLELARVKKAVN------PDDTLLVVDAMTGQEAANLTRT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TKMDG  RGG  + +      P+ F+GVGE +  L+PF     ++ I 
Sbjct: 235 FHDQIGVTGAILTKMDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRMASRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 SMGD 298


>gi|313836655|gb|EFS74369.1| signal recognition particle protein [Propionibacterium acnes
           HL037PA2]
 gi|314928163|gb|EFS91994.1| signal recognition particle protein [Propionibacterium acnes
           HL044PA1]
 gi|314972161|gb|EFT16258.1| signal recognition particle protein [Propionibacterium acnes
           HL037PA3]
 gi|328907975|gb|EGG27735.1| signal recognition particle protein [Propionibacterium sp. P08]
          Length = 528

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 149/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   ++      +    RL D   +    ++   L+ +D+ ++V ++ V  +  + + 
Sbjct: 2   FDTLQDRIASTFKGLRGKGRLTDADIDATTRQIRIALLEADVNLSVVKEFVAAIKERCHG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++S      Q+++  V+E + ++L   ++   +   + P V+++ G+ G GKTT+ GKL
Sbjct: 62  EELSKALNPTQQIVKIVNEELVEILGGQTRTVRF-AKNPPTVVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++   + G   +LAA D  R  A+ QL++  +R        E G+   D   +A +A  +
Sbjct: 121 ARWFKEEGHSPLLAACDLQRPNAVTQLQVVGERAGVHVFAPEPGNGVGDPIQVARDAVAE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+IIDTAGRL  ++ +MA    +           P   L V+DA  GQ+A+  
Sbjct: 181 AEHKLYDVVIIDTAGRLGVDAEMMAQAADIKAATD------PDETLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+++TK+DG ARGG  + I      P+ F   GEG+ D + F     ++
Sbjct: 235 AVAFQEGVGFNGVVLTKLDGDARGGAALSIARVVGKPIMFASSGEGLKDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|298207766|ref|YP_003715945.1| signal recognition particle protein [Croceibacter atlanticus
           HTCC2559]
 gi|83850404|gb|EAP88272.1| signal recognition particle protein [Croceibacter atlanticus
           HTCC2559]
          Length = 442

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL + +  +    ++ +       +E+   L+ +D+   +A++    +  K   
Sbjct: 2   FDSLSDKLDKALHVLKGHGQITEVNVAETLKEVRRALVDADVNYKIAKEFTSTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V + + +++    +  N   S  P +IL+ G+ G GKTT  GKL
Sbjct: 62  QGVLKDLKPGQLMVKLVKDELTELMGGEVEGINL--SGNPSIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +    K +L A D +R AAI+QL +  ++   +    E   D  A++  A   A+
Sbjct: 120 ANFLKNKKTKKPLLVACDIYRPAAINQLHVVGEQIGVEVFSDEGNQDPVAISKAAIAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRL  +  +M  I  + + ++      P   L V+D+ TGQ+A+   +
Sbjct: 180 QNGHNVVIIDTAGRLAVDEAMMTEISNIHKAIQ------PQETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+I+TK+DG  RGG  I I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 AFNDTLNFDGVILTKLDGDTRGGAAISIKSVVDKPIKFIGTGEKMDAIDVFYPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|117923933|ref|YP_864550.1| signal recognition particle-docking protein FtsY [Magnetococcus sp.
           MC-1]
 gi|117607689|gb|ABK43144.1| signal recognition particle-docking protein FtsY [Magnetococcus sp.
           MC-1]
          Length = 304

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 126/301 (41%), Positives = 184/301 (61%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +++  KL K  A T       +  II+   LD  V EELE+LLI SD GV  A  I+ E 
Sbjct: 1   MAFFDKLRKSLAKTRESFTHTLETIITGNALDVDVLEELEELLITSDFGVQAAHNIIAET 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +   +       +  + +++    +          +  PH +++VGVNGVGKTT IGK
Sbjct: 61  KERFPREAPEGNHKVKKMLKIVIADRLRRHHAALQLVTPGPHALMMVGVNGVGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS    + GL ++LAAGDTFR+AA++QL+IW +RT    +     +DAA++ Y+A+  A 
Sbjct: 121 LSAYYKEQGLDLLLAAGDTFRAAAVEQLQIWGERTQTPVIAQGQNADAASVIYDAYAAAH 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VD+LI DTAGRLH  + LM  + K++RV+K+L+  APH +  VLDATTGQNA+ QV+
Sbjct: 181 KRGVDLLIADTAGRLHTKTNLMEELKKVLRVIKKLESTAPHDIWLVLDATTGQNAINQVK 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +FH   G TGLI+TK+DGTA+GG ++ I     +P+ F+GVGEG+ DL PF  ++F   +
Sbjct: 241 IFHEALGLTGLIITKLDGTAKGGVVVGICEQFNLPIRFIGVGEGVEDLRPFDPQEFVEAL 300

Query: 311 T 311
            
Sbjct: 301 F 301


>gi|149173194|ref|ZP_01851825.1| signal recognition particle protein [Planctomyces maris DSM 8797]
 gi|148848000|gb|EDL62332.1| signal recognition particle protein [Planctomyces maris DSM 8797]
          Length = 492

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 151/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   +  LK  ++ +    +L +        E+   L+ +D+   +A   +E +  +   
Sbjct: 2   FEGLTSNLKTALSGLARGGKLTEGNIRDGLREVRQALLEADVNYEIATSFIERVTEQSVG 61

Query: 77  KDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLS 132
           + V    R    +  ++H+ L+ L  P    F++RP    VI++ G+ G GKTT  GKL+
Sbjct: 62  EKVLKSVRPDEQIVGIVHQELINLMGPVEPGFAYRPSGITVIMMCGLQGSGKTTTCGKLA 121

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQA 191
           + + + G K ML A D  R AAI+QLK+ A +           G++A  +      QA+ 
Sbjct: 122 RLLKEQGRKPMLVAADLQRPAAIEQLKVIAGQVDVPVHAEAPDGNNAVKVCQNGLNQAKK 181

Query: 192 KK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VD +I+DTAGRLH ++ LM  + ++ R L+      P  V+   DA TGQ+A+   +
Sbjct: 182 LGNVDTVILDTAGRLHVDADLMKELEQIERKLQ------PDQVIFACDAMTGQDAVNSAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+I+TK+DG  RGG  + +     +P+ F+GVGE ++ LE F     +  I
Sbjct: 236 AFNDALELDGVILTKLDGDTRGGAALSVKEVTGVPIKFIGVGEALDRLEQFHPDRMAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|222087524|ref|YP_002546061.1| signal recognition particle GTP-binding protein [Agrobacterium
           radiobacter K84]
 gi|221724972|gb|ACM28128.1| signal recognition particle GTP-binding protein [Agrobacterium
           radiobacter K84]
          Length = 521

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FENLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALDVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       + + +  P V+++VG+ G GKTT   K+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELIEMLGGEGVGIDLN-APAPVVVMMVGLQGSGKTTTSAKI 120

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + +++     KV++A+ DT R AA +QL+    +   D +    G     +A  A + A+
Sbjct: 121 AHRLTSRDRKKVLMASLDTRRPAAQEQLRQLGVQAGIDTLPVIAGQSPTDIAARAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGGHDVVILDTAGRTHIDEPLMVEMADIKK------KSNPHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +GVGE + +LE F  +  +  I
Sbjct: 235 NFDDRVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMGELEEFHPRRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|22298471|ref|NP_681718.1| cell division protein [Thermosynechococcus elongatus BP-1]
 gi|22294651|dbj|BAC08480.1| cell division protein [Thermosynechococcus elongatus BP-1]
          Length = 458

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 109/314 (34%), Positives = 186/314 (59%), Gaps = 5/314 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            ++V  E ++W+++L +G   T   L   +  I+    L     E +E LL+++D+GV  
Sbjct: 137 PEEVDLEEITWLQRLRQGLGKTRRGLVHQLRAIVGQGPLSRDAVEAIEMLLLQADVGVKA 196

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRP---HVILVVG 118
            ++I+  L TK   + +   + +  + E++  +L  P  + +  + + +    ++ L+ G
Sbjct: 197 TEQIIAALQTKIRQETLPADQAIAYLKEILRDILDRPFQQGYRRNCAPKKGTLNIWLIAG 256

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNGVGKTT IGKL+   + +G + ++AA DTFR+AA +Q+KIW  R++ + + +    +D
Sbjct: 257 VNGVGKTTTIGKLAHIATQSGYRCLIAAADTFRAAATEQVKIWGQRSNVEVIANPGKNTD 316

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A   AQA+  ++L++DTAGRL N + LM  + K+ R++ +    A    L VL
Sbjct: 317 PAAVVFDAIGAAQARGTELLLVDTAGRLQNKANLMEELKKIRRIIDKRAGDAQIESLLVL 376

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DAT GQN LRQ ++F   A  TG+I+TK+DGTA+GG  + +V    +P+ F+G GEGI D
Sbjct: 377 DATLGQNGLRQAQVFAEAAQLTGVILTKLDGTAKGGVALAVVQELGLPIRFIGAGEGIKD 436

Query: 298 LEPFVAKDFSAVIT 311
           L PF + +F   + 
Sbjct: 437 LRPFSSFEFVEALL 450


>gi|218441087|ref|YP_002379416.1| signal recognition particle protein [Cyanothece sp. PCC 7424]
 gi|218173815|gb|ACK72548.1| signal recognition particle protein [Cyanothece sp. PCC 7424]
          Length = 488

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 140/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++    +    ++         +E+   LI +D+ + V +  V E+  K   
Sbjct: 2   FDALAERLEDAWKKLRGQDKISQSNIQEALKEVRRALISADVNLQVVKGFVAEVEKKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + K++   + P     S  P VIL+ G+ G GKTT   KL
Sbjct: 62  AEVISGVNPGQQFIKIVYDELVKVMGESNIPL-AKASTPPTVILMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       ++ A D +R AAIDQL     +           +D   +A    ++A+ 
Sbjct: 121 ALFLRKEKRTCLMVATDVYRPAAIDQLITLGQQIEVPVFEMGTDADPVEIARLGVEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VD +IIDTAGRL  +  +M  + ++   +K      P   L V+DA TGQ A      
Sbjct: 181 LGVDTVIIDTAGRLQIDQDMMGELARIKATVK------PDDTLLVVDAMTGQEAATLTHT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TK+DG  RGG  + +      P+ F+GVGE +  L+PF  +  ++ I 
Sbjct: 235 FHEQIGITGAILTKLDGDTRGGAALSVRQVSGQPIKFVGVGEKVEALQPFYPERMASRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 NMGD 298


>gi|83814688|ref|YP_445750.1| signal recognition particle protein [Salinibacter ruber DSM 13855]
 gi|83756082|gb|ABC44195.1| signal recognition particle protein [Salinibacter ruber DSM 13855]
          Length = 461

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 144/308 (46%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL+  +  +    R+D+        E+   L+ +D+   VA++    +      
Sbjct: 2   FEGLSQKLEGALQSVTGQGRIDEVNVAETMREIRRALLNADVNYQVAKEFTANVKEAATG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       +++   + + + ++L    +         P VILV G+ G GKTT   KL
Sbjct: 62  EDVLTSVTPGEQLTKIMHDELTRVLGGEHEGIEM-AETPPTVILVAGLQGSGKTTFCAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA----LAYEAFK 187
           ++     G   +LAA D +R AA+DQLK  AD+ +A     E   +       +A EA  
Sbjct: 121 ARHFRKEGHAPLLAASDVYRPAAVDQLKTLADQVNAPVYSIEDDGEIVEDAVRVANEAVT 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +AQ    D++IIDTAGR+H +  +M  +  +   +      AP+  L V+D+ TGQ+A+ 
Sbjct: 181 EAQNTARDIVIIDTAGRMHIDEAMMQEVEDIKTTV------APNETLFVVDSMTGQDAVN 234

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+      G++++K+DG  RGG  + I      P+ F   GE ++ L PF     +
Sbjct: 235 TAKEFNERIDYDGVVLSKLDGDTRGGAALSIRTVVNKPIKFASTGEKLDALTPFYPDRMA 294

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 295 QRILGMGD 302


>gi|160938805|ref|ZP_02086156.1| hypothetical protein CLOBOL_03699 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437768|gb|EDP15528.1| hypothetical protein CLOBOL_03699 [Clostridium bolteae ATCC
           BAA-613]
          Length = 458

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 151/305 (49%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++    RL +       +E++  L+ +D+   V ++ +  +  +  
Sbjct: 2   AFESLSDKLQNVFKNLRGKGRLSEADVKAALKEVKMALLEADVSFRVVKQFIGSVQERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q V+  V+E + K++   +   +   S+   +I++ G+ G GKTT   K
Sbjct: 62  GEDVFGSLTPGQTVIKIVTEELVKLMGSETTEISLKPSNEISIIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ KM   G K +LAA D +R AAI+QL+I  DR           +    +A  A + A 
Sbjct: 122 IAAKMKAKGRKPLLAACDIYRPAAIEQLQINGDRVGIPVFSMGNKNKPVDIAKAALEHAS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++V+I+DTAGRLH +  +M  + ++       D       + V+DA TGQ+A+    
Sbjct: 182 KNGLNVVILDTAGRLHIDETMMDELVEIK------DNLDVCQTILVVDAMTGQDAVNVAG 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G  G+I+TK+DG  RGG  + I      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 TFNDKIGIDGVILTKLDGDTRGGAALSIRAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|260437029|ref|ZP_05790845.1| signal recognition particle-docking protein FtsY [Butyrivibrio
           crossotus DSM 2876]
 gi|292810338|gb|EFF69543.1| signal recognition particle-docking protein FtsY [Butyrivibrio
           crossotus DSM 2876]
          Length = 311

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/303 (40%), Positives = 181/303 (59%), Gaps = 4/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + + +KL  G + T   +  G+  I     ++D+   EELE+ LI  DIGV   +KI++ 
Sbjct: 1   MGFFKKLVSGLSKTRNNIVSGLNSIFHGFSKIDEDFYEELEETLIMGDIGVETTEKIIDG 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K     +   ++  D+  LI  +   +      ++F +R  VILV+GVNGVGKTT I
Sbjct: 61  LRQKVREDKIKDPQLCKDI--LIDSIKEQMDLGENAYEFENRRSVILVIGVNGVGKTTSI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++  +   G KV+LAA DTFR+AAI+QL+ WA R S D +    GSD  A+ ++A + 
Sbjct: 119 GKIAAGLKKQGKKVILAAADTFRAAAIEQLEEWAKRASVDIIAQNEGSDPGAVVFDALQA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+++  DVLI DTAGRLHN   LM  + K+ +++ R  P A    L VLD TTGQNAL Q
Sbjct: 179 AKSRNADVLICDTAGRLHNKKNLMDELRKIDKIITREFPDAYRENLIVLDGTTGQNALSQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           ++ F  V   +G+I+TKMDGTA+GG  + I   + IPV ++GVGE I DL+ F + +F  
Sbjct: 239 LKEFKDVCDVSGIILTKMDGTAKGGIAVAIQSEYNIPVKYIGVGEQIEDLQKFDSDEFVN 298

Query: 309 VIT 311
            + 
Sbjct: 299 ALF 301


>gi|319789859|ref|YP_004151492.1| signal recognition particle-docking protein FtsY [Thermovibrio
           ammonificans HB-1]
 gi|317114361|gb|ADU96851.1| signal recognition particle-docking protein FtsY [Thermovibrio
           ammonificans HB-1]
          Length = 480

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 123/309 (39%), Positives = 190/309 (61%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            +K+    L  ++   +G   T   L          R +D+ + EELE+ LI +D+GV  
Sbjct: 166 EEKLGLSGLKVLKSFKEGLKKTRDALG---LSAFKGRSVDESLFEELEERLILADVGVKT 222

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             ++++ L  +   + +     L ++ +   K ++   +    + S +P VILV+GVNGV
Sbjct: 223 TMELIDYLRQEAKKRKIKTSDKLLELLKERLKEILRNCRG-ELNLSEKPSVILVLGVNGV 281

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K++ D GL V++AA DTFR+AAI+QL++WA+R  A  V ++ G+D AA+ 
Sbjct: 282 GKTTTIGKLAKQLKDKGLSVVVAAADTFRAAAIEQLEVWAERAGARIVKAQEGTDPAAVV 341

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A +  +AK  DVLI+DTAGRLHN   LM  I K+ +V+ R  P  P  +L VLDA TG
Sbjct: 342 FDAIQSIKAKGEDVLIVDTAGRLHNKERLMKEIHKIKKVIGREFPGQPAEILLVLDANTG 401

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q E+F  +   TG+++TK+DGTA+GG ++ I  T +IP+ ++G+GE I DL PF 
Sbjct: 402 QNALSQAEVFKKITDITGIVLTKLDGTAKGGIVVSICNTLRIPIKYVGIGEKIEDLRPFD 461

Query: 303 AKDFSAVIT 311
            ++F   + 
Sbjct: 462 PEEFVEALF 470


>gi|78065151|ref|YP_367920.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           sp. 383]
 gi|77965896|gb|ABB07276.1| signal recognition particle subunit FFH/SRP54 (srp54) [Burkholderia
           sp. 383]
          Length = 455

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVSLPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++    +    + +     P VIL+ G+ G GKTT  
Sbjct: 62  EEVISSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVTPPAVILMAGLQGAGKTTTA 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK  +++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVSEQVGADFFPSTPDQKPVDIAIAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRL  + ++M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLIVDTAGRLGIDEVMMQEIAALHGTLKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|198275694|ref|ZP_03208225.1| hypothetical protein BACPLE_01869 [Bacteroides plebeius DSM 17135]
 gi|198271323|gb|EDY95593.1| hypothetical protein BACPLE_01869 [Bacteroides plebeius DSM 17135]
          Length = 443

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FDNLSERLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKNFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +     +   RP VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTAVKPSQLMVKIVHDELTTLMGGDTAEI--ELKGRPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ M      K +L A D +R AAI+QLK+   +            D   +A  A ++A+
Sbjct: 120 ARMMKSKKNRKPLLVACDVYRPAAIEQLKVLGQQIEVPVYSELDSKDPVQIALNAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++I+DTAGRL  +  +M  I  + + +       P + L V+DA TGQ+A+    
Sbjct: 180 AKGYDLVIVDTAGRLAIDEQMMNEIEAIKKAIN------PDATLFVVDAMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNERLDFTGVVLTKLDGDTRGGAALSIRTVVNKPIMFVGTGEKLDAVDQFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|170731913|ref|YP_001763860.1| signal recognition particle protein [Burkholderia cenocepacia
           MC0-3]
 gi|169815155|gb|ACA89738.1| signal recognition particle protein [Burkholderia cenocepacia
           MC0-3]
          Length = 455

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 146/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVSLPVVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  ++    +    + +     P VIL+ G+ G GKTT +
Sbjct: 62  EEVISSLSPGQALVGVVQKELTAVIGGDYEGKAAELNLAVTPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK   ++  ADF  S        +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIMQLKTVTEQVGADFFPSTPDQKPVDIALAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVL++DTAGRL  +  +M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLLVDTAGRLGIDEAMMQEIAALHGTLKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFNDTLPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFVGVAEKLDGLEVFHPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|319795658|ref|YP_004157298.1| signal recognition particle-docking protein ftsy [Variovorax
           paradoxus EPS]
 gi|315598121|gb|ADU39187.1| signal recognition particle-docking protein FtsY [Variovorax
           paradoxus EPS]
          Length = 435

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 128/305 (41%), Positives = 182/305 (59%), Gaps = 7/305 (2%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E   W  KL  G   T      GI  +  + ++DD + EELE  L+ +D GV   + +++
Sbjct: 137 ERKGWFDKLKTGLRKT----GTGIQAVFVNAQIDDALYEELESALLMADTGVKATEYLLD 192

Query: 69  ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +L  +   +  +    +  + +E I  +L PL KP        P VI+V GVNG GKTT 
Sbjct: 193 DLKVRVKRQMATDAAQVKVLLAEAIADLLRPLEKPLVIG-QFTPTVIMVAGVNGAGKTTS 251

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+K ++  G  V+LAA DTFR+AA +QL +WADR + + V S  G D +A++++A  
Sbjct: 252 IGKLTKHLATEGASVLLAAADTFRAAAREQLLVWADRNTVEIV-SNEGGDPSAVSFDAVN 310

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL 
Sbjct: 311 AGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRVVTKADASAPHEVLLVIDGNTGQNALA 370

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           QV+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DLE F A++F+
Sbjct: 371 QVKAFDETLGLTGLIVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLETFNAREFA 430

Query: 308 AVITG 312
             + G
Sbjct: 431 QALLG 435


>gi|313763657|gb|EFS35021.1| signal recognition particle protein [Propionibacterium acnes
           HL013PA1]
          Length = 528

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L      +    RL D   +    ++   L+ +D+ ++V ++ V  +  + + 
Sbjct: 2   FDTLQDRLASTFKGLRGKGRLTDADIDATTRQIRIALLEADVNLSVVKEFVAAIKERCHG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++S      Q+++  V+E + ++L   ++   +     P ++++ G+ G GKTT+ GKL
Sbjct: 62  EELSKALNPTQQIVKIVNEELVEILGGQTRTVRF-AKTPPTIVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++   + G   +LAA D  R  A+ QL++  +R        E G+   D   +A +A  +
Sbjct: 121 ARWFKEEGHSPLLAACDLQRPNAVTQLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+IIDTAGRL  ++ +MA    +           P   L V+DA  GQ+A+  
Sbjct: 181 AEHKLYDVVIIDTAGRLGVDAEMMAQAADIKTATD------PDETLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+++TK+DG ARGG  + I      P+ F   GEG+ D + F     ++
Sbjct: 235 AVAFQEGVGFDGVVLTKLDGDARGGAALSIARVVGKPIMFASSGEGLKDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|50842924|ref|YP_056151.1| signal recognition particle protein [Propionibacterium acnes
           KPA171202]
 gi|289426463|ref|ZP_06428206.1| signal recognition particle protein [Propionibacterium acnes SK187]
 gi|295130981|ref|YP_003581644.1| signal recognition particle protein [Propionibacterium acnes SK137]
 gi|50840526|gb|AAT83193.1| signal recognition particle protein [Propionibacterium acnes
           KPA171202]
 gi|289153191|gb|EFD01909.1| signal recognition particle protein [Propionibacterium acnes SK187]
 gi|291375525|gb|ADD99379.1| signal recognition particle protein [Propionibacterium acnes SK137]
 gi|313773595|gb|EFS39561.1| signal recognition particle protein [Propionibacterium acnes
           HL074PA1]
 gi|313794051|gb|EFS42075.1| signal recognition particle protein [Propionibacterium acnes
           HL110PA1]
 gi|313801438|gb|EFS42689.1| signal recognition particle protein [Propionibacterium acnes
           HL110PA2]
 gi|313807882|gb|EFS46363.1| signal recognition particle protein [Propionibacterium acnes
           HL087PA2]
 gi|313811647|gb|EFS49361.1| signal recognition particle protein [Propionibacterium acnes
           HL083PA1]
 gi|313813544|gb|EFS51258.1| signal recognition particle protein [Propionibacterium acnes
           HL025PA1]
 gi|313816834|gb|EFS54548.1| signal recognition particle protein [Propionibacterium acnes
           HL059PA1]
 gi|313819667|gb|EFS57381.1| signal recognition particle protein [Propionibacterium acnes
           HL046PA2]
 gi|313822227|gb|EFS59941.1| signal recognition particle protein [Propionibacterium acnes
           HL036PA1]
 gi|313823540|gb|EFS61254.1| signal recognition particle protein [Propionibacterium acnes
           HL036PA2]
 gi|313825867|gb|EFS63581.1| signal recognition particle protein [Propionibacterium acnes
           HL063PA1]
 gi|313829547|gb|EFS67261.1| signal recognition particle protein [Propionibacterium acnes
           HL063PA2]
 gi|313831388|gb|EFS69102.1| signal recognition particle protein [Propionibacterium acnes
           HL007PA1]
 gi|313835000|gb|EFS72714.1| signal recognition particle protein [Propionibacterium acnes
           HL056PA1]
 gi|314914659|gb|EFS78490.1| signal recognition particle protein [Propionibacterium acnes
           HL005PA4]
 gi|314920862|gb|EFS84693.1| signal recognition particle protein [Propionibacterium acnes
           HL050PA3]
 gi|314924621|gb|EFS88452.1| signal recognition particle protein [Propionibacterium acnes
           HL036PA3]
 gi|314930540|gb|EFS94371.1| signal recognition particle protein [Propionibacterium acnes
           HL067PA1]
 gi|314954300|gb|EFS98706.1| signal recognition particle protein [Propionibacterium acnes
           HL027PA1]
 gi|314957421|gb|EFT01524.1| signal recognition particle protein [Propionibacterium acnes
           HL002PA1]
 gi|314962015|gb|EFT06116.1| signal recognition particle protein [Propionibacterium acnes
           HL002PA2]
 gi|314963595|gb|EFT07695.1| signal recognition particle protein [Propionibacterium acnes
           HL082PA1]
 gi|314968573|gb|EFT12671.1| signal recognition particle protein [Propionibacterium acnes
           HL037PA1]
 gi|314974263|gb|EFT18359.1| signal recognition particle protein [Propionibacterium acnes
           HL053PA1]
 gi|314976732|gb|EFT20827.1| signal recognition particle protein [Propionibacterium acnes
           HL045PA1]
 gi|314978890|gb|EFT22984.1| signal recognition particle protein [Propionibacterium acnes
           HL072PA2]
 gi|314986450|gb|EFT30542.1| signal recognition particle protein [Propionibacterium acnes
           HL005PA2]
 gi|314990810|gb|EFT34901.1| signal recognition particle protein [Propionibacterium acnes
           HL005PA3]
 gi|315079449|gb|EFT51442.1| signal recognition particle protein [Propionibacterium acnes
           HL053PA2]
 gi|315081324|gb|EFT53300.1| signal recognition particle protein [Propionibacterium acnes
           HL078PA1]
 gi|315083525|gb|EFT55501.1| signal recognition particle protein [Propionibacterium acnes
           HL027PA2]
 gi|315087205|gb|EFT59181.1| signal recognition particle protein [Propionibacterium acnes
           HL002PA3]
 gi|315089379|gb|EFT61355.1| signal recognition particle protein [Propionibacterium acnes
           HL072PA1]
 gi|315095403|gb|EFT67379.1| signal recognition particle protein [Propionibacterium acnes
           HL038PA1]
 gi|315099284|gb|EFT71260.1| signal recognition particle protein [Propionibacterium acnes
           HL059PA2]
 gi|315100482|gb|EFT72458.1| signal recognition particle protein [Propionibacterium acnes
           HL046PA1]
 gi|315106740|gb|EFT78716.1| signal recognition particle protein [Propionibacterium acnes
           HL030PA1]
 gi|315109083|gb|EFT81059.1| signal recognition particle protein [Propionibacterium acnes
           HL030PA2]
 gi|327328336|gb|EGE70098.1| signal recognition particle protein [Propionibacterium acnes
           HL096PA2]
 gi|327329799|gb|EGE71555.1| signal recognition particle protein [Propionibacterium acnes
           HL096PA3]
 gi|327444120|gb|EGE90774.1| signal recognition particle protein [Propionibacterium acnes
           HL043PA2]
 gi|327445001|gb|EGE91655.1| signal recognition particle protein [Propionibacterium acnes
           HL043PA1]
 gi|327446484|gb|EGE93138.1| signal recognition particle protein [Propionibacterium acnes
           HL013PA2]
 gi|327451930|gb|EGE98584.1| signal recognition particle protein [Propionibacterium acnes
           HL092PA1]
 gi|327455035|gb|EGF01690.1| signal recognition particle protein [Propionibacterium acnes
           HL087PA3]
 gi|327457677|gb|EGF04332.1| signal recognition particle protein [Propionibacterium acnes
           HL083PA2]
 gi|328752240|gb|EGF65856.1| signal recognition particle protein [Propionibacterium acnes
           HL020PA1]
 gi|328755133|gb|EGF68749.1| signal recognition particle protein [Propionibacterium acnes
           HL087PA1]
 gi|328758089|gb|EGF71705.1| signal recognition particle protein [Propionibacterium acnes
           HL025PA2]
 gi|328760087|gb|EGF73666.1| signal recognition particle protein [Propionibacterium acnes
           HL099PA1]
 gi|332675861|gb|AEE72677.1| signal recognition particle protein [Propionibacterium acnes 266]
          Length = 528

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L      +    RL D   +    ++   L+ +D+ ++V ++ V  +  + + 
Sbjct: 2   FDTLQDRLASTFKGLRGKGRLTDADIDATTRQIRIALLEADVNLSVVKEFVAAIKERCHG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++S      Q+++  V+E + ++L   ++   +     P ++++ G+ G GKTT+ GKL
Sbjct: 62  EELSKALNPTQQIVKIVNEELVEILGGQTRTVRF-AKTPPTIVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++   + G   +LAA D  R  A+ QL++  +R        E G+   D   +A +A  +
Sbjct: 121 ARWFKEEGHSPLLAACDLQRPNAVTQLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+IIDTAGRL  ++ +MA    +           P   L V+DA  GQ+A+  
Sbjct: 181 AEHKLYDVVIIDTAGRLGVDAEMMAQAADIKTATD------PDETLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+++TK+DG ARGG  + I      P+ F   GEG+ D + F     ++
Sbjct: 235 AVAFQEGVGFDGVVLTKLDGDARGGAALSIARVVGKPIMFASSGEGLKDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|326559559|gb|EGE09973.1| signal recognition particle protein [Moraxella catarrhalis 7169]
 gi|326567759|gb|EGE17865.1| signal recognition particle protein [Moraxella catarrhalis BC1]
          Length = 514

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  I  + +L +        E+   L+ +D+ + VA+  V  +  +   
Sbjct: 2   FDTLTERLSGSLRHIAGTGQLTEDNIKDTLREVRMALLEADVALPVARNFVARVKEQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + + +M+   ++         P V L+ G+ G GKTT  GKL
Sbjct: 62  QEVLKELAPGQAFVKIVYDELTEMMGSANQTLEM-TGKPPLVYLLAGLQGAGKTTTAGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + D    KVML + D +R AAI QL+  A +  A FV S    +   +A  A  +A+
Sbjct: 121 AKFLQDKQNKKVMLVSADIYRPAAIKQLEQVAAQVGASFVPSTTDENPIDIARRAIDEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D+LIIDTAGRLH +  +M+ I ++ + +       P   L V+D+ TGQ+A    +
Sbjct: 181 LQYQDILIIDTAGRLHIDDEMMSEIKELTKAVN------PVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG GE +  LE F  +  +  I
Sbjct: 235 AFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLEALELFHPERIAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|296113557|ref|YP_003627495.1| signal recognition particle subunit FFH/SRP54 [Moraxella
           catarrhalis RH4]
 gi|295921251|gb|ADG61602.1| signal recognition particle subunit FFH/SRP54 [Moraxella
           catarrhalis RH4]
 gi|326568604|gb|EGE18675.1| signal recognition particle protein [Moraxella catarrhalis BC7]
 gi|326568729|gb|EGE18799.1| signal recognition particle protein [Moraxella catarrhalis BC8]
 gi|326572598|gb|EGE22587.1| signal recognition particle protein [Moraxella catarrhalis CO72]
 gi|326574194|gb|EGE24142.1| signal recognition particle protein [Moraxella catarrhalis
           101P30B1]
 gi|326574979|gb|EGE24908.1| signal recognition particle protein [Moraxella catarrhalis O35E]
          Length = 514

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  I  + +L +        E+   L+ +D+ + VA+  V  +  +   
Sbjct: 2   FDTLTERLSGSLRHIAGTGQLTEDNIKDTLREVRMALLEADVALPVARNFVARVKEQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + + +M+   ++         P V L+ G+ G GKTT  GKL
Sbjct: 62  QEVLKELAPGQAFVKIVYDELTEMMGSANQTLEM-TGKPPLVYLLAGLQGAGKTTTAGKL 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + D    KVML + D +R AAI QL+  A +  A FV S    +   +A  A  +A+
Sbjct: 121 AKFLQDKQNKKVMLVSADIYRPAAIKQLEQVAAQVGASFVPSTTDENPIDIARRAIDEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D+LIIDTAGRLH +  +M+ I ++ + +       P   L V+D+ TGQ+A    +
Sbjct: 181 LQYQDILIIDTAGRLHIDDEMMSEIKELTKAVN------PVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG GE +  LE F  +  +  I
Sbjct: 235 AFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLEALELFHPERIAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|257068178|ref|YP_003154433.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Brachybacterium faecium DSM 4810]
 gi|256558996|gb|ACU84843.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Brachybacterium faecium DSM 4810]
          Length = 530

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 148/307 (48%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S ++   +  +    RL +   +    E+   L+ +D+ VAV ++    +  +   
Sbjct: 2   FNNLSDRITASLKGLRGHGRLTEADVDKTIREIRRALLDADVAVAVVREFTGRVRERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+V+  V++ + ++L   +   ++   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  EEVSKALNPAQQVVKIVNDELVEVLGGATGELHF-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +K M   G   +L A D  R  A+ QL++  +R        E G+   D   +A      
Sbjct: 121 AKWMKAEGHTPLLVAADLQRPNAVTQLQVVGERAGVPVFAPEPGNGVGDPVLVAMNGVST 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           AQ ++ DV+I+DTAGRL  +  +M     +       D   PH  L V+DA  GQ+A R 
Sbjct: 181 AQFQQHDVVIVDTAGRLGIDEEMMEQARNI------RDAVTPHETLFVVDAMIGQDAARV 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G TG++++K+DG ARGG  + I    + P+ F   GE +++ E F     + 
Sbjct: 235 AEAFRDGVGFTGVVLSKLDGDARGGAALSITGVTQRPILFASTGESLDEFERFHPDRMAN 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|169827098|ref|YP_001697256.1| signal recognition particle-like (SRP) component [Lysinibacillus
           sphaericus C3-41]
 gi|168991586|gb|ACA39126.1| signal recognition particle-like (SRP) component [Lysinibacillus
           sphaericus C3-41]
          Length = 452

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 155/306 (50%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  I  I    ++ +     +  E+   LI +D+ + V ++ V+++  +  
Sbjct: 2   AFEGLAERLQGTIQKIKGKGKVSEQDVKEMMREVRFALIEADVNLKVVKEFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + +++     P  ++ +  P VI++VG+ G GKTT  GK
Sbjct: 62  GVDVMQSLTPGQQVIKIVQDELTELMGGEQSPIKFN-TKPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AA+ QL+    + S              +A +A ++A
Sbjct: 121 LANVLRKKYNRKPLLVAADVYRPAAVQQLETLGKQLSLPVFSLGTDISPVKIARQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DV+IIDTAGRLH +  LM  +  +  + +      P  V  V+DA TGQ+A+   
Sbjct: 181 KEDHHDVVIIDTAGRLHIDEDLMQELKDIRALKE------PDEVFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+   G TG+++TK+DG  RGG  + I    + P+ F+G+GE ++ LEPF  +  ++ 
Sbjct: 235 ESFNEAIGITGVVLTKLDGDTRGGAALSIRSVTQKPIKFVGMGEKMDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|314919228|gb|EFS83059.1| signal recognition particle protein [Propionibacterium acnes
           HL050PA1]
          Length = 528

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L      +    RL D   +    ++   L+ +D+ ++V ++ V  +  + + 
Sbjct: 2   FDTLQDRLASTFKGLRGKGRLTDADIDATTRQIRIALLEADVNLSVVKEFVAAIKERCHG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++S      Q+++  V+E + ++L   ++   +     P ++++ G+ G GKTT+ GKL
Sbjct: 62  EELSKALNPTQQIVKIVNEELVEILGGQTRTVRF-AKTPPTIVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++   + G   +LAA D  R  A+ QL++  +R        E G+   D   +A +A  +
Sbjct: 121 ARWFKEEGHSPLLAACDLQRPNAVTQLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+IIDTAGRL  ++ +MA    +           P   L V+DA  GQ+A+  
Sbjct: 181 AEHKVYDVVIIDTAGRLGVDAEMMAQAADIKTATD------PDETLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+++TK+DG ARGG  + I      P+ F   GEG+ D + F     ++
Sbjct: 235 AVAFQEGVGFDGVVLTKLDGDARGGAALSIARVVGKPIMFASSGEGLKDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|254431069|ref|ZP_05044772.1| signal recognition particle-docking protein FtsY [Cyanobium sp. PCC
           7001]
 gi|197625522|gb|EDY38081.1| signal recognition particle-docking protein FtsY [Cyanobium sp. PCC
           7001]
          Length = 529

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 102/312 (32%), Positives = 174/312 (55%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V+ E + W+ +L +G   T       + + +    L     ++LE  L+R+D+GV    
Sbjct: 216 EVSLEEIDWLGRLRQGLEKTRQGFVTQLLEKLGDDPLSPEQLDDLETTLLRADVGVTATD 275

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVN 120
           ++++ L  +   + V     +  + E +  +L       + P       R +V L+VGVN
Sbjct: 276 QVLDALRERLNREVVDPAEGIRFLKEQLRDILEQPIQTSASPLLAPERGRLNVWLLVGVN 335

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           GVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W +R+    + +    +D A
Sbjct: 336 GVGKTTTLGKLANLAVRSGYSCLIAAADTFRAAAVQQVQVWGERSGVPVIANPSANADPA 395

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A   A+A+  +++++DTAGRL     LM  + K+ R++ +L P A    L VLD+
Sbjct: 396 AVVYDALGAAKAQGTELVLVDTAGRLQTKHNLMEELAKVRRIVDKLAPDAAVESLLVLDS 455

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN LRQ   F + AG TG+++TK+DG+ARGG  + +     +P+ F+G GEGI DL 
Sbjct: 456 SQGQNGLRQAMAFASAAGLTGVVITKLDGSARGGVALAVASEANLPIRFIGAGEGIRDLR 515

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 516 PFNSFEFVEALL 527


>gi|326315620|ref|YP_004233292.1| signal recognition particle protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372456|gb|ADX44725.1| signal recognition particle protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 459

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 144/304 (47%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ + KL   + ++    R+ +     +  E+   L+ +D+ + V +  +  +  K   +
Sbjct: 3   SALTEKLSRLVKEMRGQARITESNVQDMLREVRMALLEADVALPVVRDFIARVKEKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q ++  V+  +   +       N   +  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVLGSLKPGQTLVSIVNRELAATMGEGVSDINL-AAQPPAVILMAGLQGAGKTTTTAKLA 121

Query: 133 KKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +    KV+  +GD +R AAI+QLK    +  A++  S        +A  A   A+ 
Sbjct: 122 KHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAGAEWFPSTPDQKPLDIARAAIDHARR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  +  LM  I ++   L       P   L V+DA  GQ+A+   + 
Sbjct: 182 HYFDVLLVDTAGRLAIDEALMNEIKELHAALN------PVETLFVVDAMQGQDAVNTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG +RGG  + +      P+ F GV E I+ LE F A+  +  + 
Sbjct: 236 FKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPIKFAGVSEKIDGLEVFDAERHAGRVL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|170078230|ref|YP_001734868.1| signal recognition particle protein [Synechococcus sp. PCC 7002]
 gi|169885899|gb|ACA99612.1| signal recognition particle protein [Synechococcus sp. PCC 7002]
          Length = 478

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++    +    ++ +       +E+   L+ +D+ + V +  + ++      
Sbjct: 2   FDALAERLEDAWKSLRGQDKISESNIKEALKEVRRALLEADVNLQVVKGFISDVEKAAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + K++   + P   +  ++P VIL+ G+ G GKTT   KL
Sbjct: 62  AEVISGVNPGQQFIKIVYDELVKIMGESNVPL-AEAENKPSVILMAGLQGTGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S  +       ++ A D +R AAIDQLK   ++           ++   +A +  ++A+ 
Sbjct: 121 SLYLRKQNKTALMVATDVYRPAAIDQLKTLGEQIDVPVFDLGSDANPVDIAKQGVEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VDV+++DTAGRL  ++ +MA + ++   +       P   L V+D+ TGQ A      
Sbjct: 181 LGVDVVLVDTAGRLQIDADMMAELKQIKESIN------PDDTLLVVDSMTGQEAASLTRT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG I+TKMDG  RGG  + + +    P+ F+GVGE +  LEPF     ++ I 
Sbjct: 235 FHEEIGVTGAILTKMDGDTRGGAALSVRMISGQPIKFIGVGEKVEALEPFYPDRLASRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 NMGD 298


>gi|269925893|ref|YP_003322516.1| signal recognition particle protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789553|gb|ACZ41694.1| signal recognition particle protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 441

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 144/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L+     + S  +L +        E+   L+ +D+ + VA++ + ++  K   
Sbjct: 2   FENLTDRLQGAFDKLTSKGKLQESDVDLALREVRIALMEADVNLKVAKQFINQIKEKISE 61

Query: 77  KD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +         Q+++  V + +  +L           S  P + ++VG+ G GKTT   KL
Sbjct: 62  QRALESLTPAQQIIQVVHQELVSLLGSDQCKLET-ASTPPTIYMLVGLQGSGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L A D +R AAI QL+      +              +A  A   A+ 
Sbjct: 121 ALYLRKQGARPLLVAADIYRPAAIKQLQTLGGSLNIPVYSEGTSVPPENIATNAIDFAKQ 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +  +I+DTAGRLH +  +MA    ++RV  ++ P     +L V+DA TGQ A++  E 
Sbjct: 181 SSLTHVILDTAGRLHIDEAMMAE---LVRVRDKVSPT---EILLVVDAMTGQEAVKVAEQ 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG+IMTK+DG ARGG  + I     +P+  +G GE  +  EP +    ++ I 
Sbjct: 235 FHNTLGVTGVIMTKLDGDARGGAALSIRAVTGVPIKMIGTGERPDAFEPLIPDRLASRIL 294

Query: 312 GCLDY 316
           G  D 
Sbjct: 295 GLGDM 299


>gi|327441079|dbj|BAK17444.1| signal recognition particle GTPase [Solibacillus silvestris
           StLB046]
          Length = 452

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 155/306 (50%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  I  I    ++ +     +  E+   LI +D+ + V ++ V+++  +  
Sbjct: 2   AFEGLAERLQGTIQKIKGKGKVTEQDVKEMMREVRFALIEADVNLKVVKEFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + +  ++     P  +  +  P VI++VG+ G GKTT  GK
Sbjct: 62  GVDVMKSLTPGQQVIKIVQDELKNLMGGEQSPIKFS-NRPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AA++QL+    + S              +A +A + A
Sbjct: 121 LANVLRKKYNKKPLLVAADIYRPAAVEQLQTLGKQLSLPVFSLGTDVSPVEIARQAIEHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +DV++IDTAGRLH +  LM  +  +  + +      P  V  V+DA TGQ+A+   
Sbjct: 181 KEEHLDVVLIDTAGRLHIDEELMQELKDIRGLKE------PDEVFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I    + P+ F+G+GE ++ LEPF  +  ++ 
Sbjct: 235 QSFNETVGITGVVLTKLDGDTRGGAALSIRSVTEKPIKFVGMGEKMDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|257870564|ref|ZP_05650217.1| signal recognition particle protein [Enterococcus gallinarum EG2]
 gi|257804728|gb|EEV33550.1| signal recognition particle protein [Enterococcus gallinarum EG2]
          Length = 433

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 187/311 (60%), Gaps = 4/311 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           +  Q  A        K TKG + +     + + ++ ++ R +D+   EE+E+ LI +D+G
Sbjct: 112 VQPQPTAVHKEDVQDKYTKGLSKSRKTFGQRLNELFANFRSVDEDFFEEVEETLIGADVG 171

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMP--LSKPFNWDFSHRPHVILV 116
              A KI + L  +   ++V     + +V  E +  +     + +    +      VIL 
Sbjct: 172 FDAAIKITDALRQEVKLRNVKKPAEVQNVIIEKLVDLYGEAGVDEVNELNMQPGLTVILF 231

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ +    G KV+LAA DTFR+ AIDQL +W  R   + V  + G 
Sbjct: 232 VGVNGVGKTTSIGKLAHQFKSEGKKVLLAAADTFRAGAIDQLVVWGGRAGVEVVRGKAGG 291

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A ++A+A++ DVL++DTAGRL N   LM  + K+ R+++R++P+APH VL V
Sbjct: 292 DPAAVVFDAMERAKAEQADVLLVDTAGRLQNKVNLMNELEKIKRIIQRVEPNAPHEVLLV 351

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q + F      TGL++TK+DGTA+GG ++ I    ++PV  +G+GEGIN
Sbjct: 352 LDATTGQNAMNQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELRLPVKLVGLGEGIN 411

Query: 297 DLEPFVAKDFS 307
           DLEPF   +F 
Sbjct: 412 DLEPFDPNEFV 422


>gi|325269145|ref|ZP_08135765.1| signal recognition particle protein [Prevotella multiformis DSM
           16608]
 gi|324988532|gb|EGC20495.1| signal recognition particle protein [Prevotella multiformis DSM
           16608]
          Length = 453

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 142/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKSFTDTVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++   +   N   S RP VIL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIVHDELAELMGGEAVGLNL--SGRPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AA++QLK+   +  A         +   +A  A  +A+
Sbjct: 120 ANMLKTKEHKNPLLVACDVYRPAAVEQLKVVGGQVGAPVYSEPGNKNVNEIADHAIAEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DV+IIDTAGRL  +  +M  I  +   +       P   L V+D+ TGQ+A+   +
Sbjct: 180 ARGNDVVIIDTAGRLAVDEEMMDEIESLKNHVN------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFNGVVLTKLDGDTRGGAALSIRTVVTKPIKFIGTGEKMEAVDVFHPGRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|256851291|ref|ZP_05556680.1| signal recognition particle protein [Lactobacillus jensenii
           27-2-CHN]
 gi|260660715|ref|ZP_05861630.1| signal recognition particle protein [Lactobacillus jensenii
           115-3-CHN]
 gi|282933265|ref|ZP_06338652.1| signal recognition particle protein [Lactobacillus jensenii 208-1]
 gi|297206159|ref|ZP_06923554.1| signal recognition particle protein [Lactobacillus jensenii JV-V16]
 gi|256616353|gb|EEU21541.1| signal recognition particle protein [Lactobacillus jensenii
           27-2-CHN]
 gi|260548437|gb|EEX24412.1| signal recognition particle protein [Lactobacillus jensenii
           115-3-CHN]
 gi|281302769|gb|EFA94984.1| signal recognition particle protein [Lactobacillus jensenii 208-1]
 gi|297149285|gb|EFH29583.1| signal recognition particle protein [Lactobacillus jensenii JV-V16]
          Length = 475

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 157/306 (51%), Gaps = 18/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S ++++ + ++    ++ +        E+   L+ +D+   V +  ++++  +  
Sbjct: 2   AFENLSERIQKALKNLTGKGKVSEADINAASREIRLALLEADVNFKVVKDFIKKIKERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+++  V++ + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GQEVQGSLTPGQQIIKIVNDELTKMMGEEAAKLN-KAPHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K + D    + +L AGD +R AAIDQLK   D+ S     SE   D A +  +   QA
Sbjct: 121 LAKYLMDTEKARPLLIAGDIYRPAAIDQLKQIGDQLSVPVF-SEDEKDVAKIVADGLAQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  K D ++IDTAGRL  +  LM  + ++  V K      P +++ V+DA TGQ   +  
Sbjct: 180 KEAKNDYVLIDTAGRLEIDEALMEELERVKEVAK------PDNIVLVVDAMTGQVGAQVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+I+TK+DG  RGG  + I      P+ F G GE +++LE F     ++ 
Sbjct: 234 ETFDKRLDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSELEGFYPDRMASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|237740647|ref|ZP_04571128.1| signal recognition particle receptor FtsY [Fusobacterium sp.
           2_1_31]
 gi|229422664|gb|EEO37711.1| signal recognition particle receptor FtsY [Fusobacterium sp.
           2_1_31]
          Length = 362

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 121/297 (40%), Positives = 181/297 (60%), Gaps = 3/297 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +++    +       + +I +S+ ++DD + EELEDLLI+SD+G+ +   ++ +L  K  
Sbjct: 66  ISQRLTKSKEGFFSKLKNIFTSKSKIDDSIYEELEDLLIQSDVGLGMTTNLINDLEKKVK 125

Query: 76  AKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           A  +S    +Y  +  L+ + L+      +    +R +VIL+VGVNGVGKTT IGKL+ K
Sbjct: 126 ANKISETSEVYEILKGLMSEFLLSQDSKVHLK-DNRINVILIVGVNGVGKTTTIGKLALK 184

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G KV+L AGDTFR+AA++QL+ WA R   D V    G+D A++ Y+   +A+A K 
Sbjct: 185 YKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADPASVVYDTLSKAEATKA 244

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D TTGQN L Q + F++
Sbjct: 245 DVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAKEFNS 304

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL  F AKDF   I 
Sbjct: 305 VTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIEDLIEFNAKDFVEAIF 361


>gi|126654295|ref|ZP_01726072.1| signal recognition particle-like (SRP) component [Bacillus sp.
           B14905]
 gi|126589259|gb|EAZ83420.1| signal recognition particle-like (SRP) component [Bacillus sp.
           B14905]
          Length = 438

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 156/306 (50%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  I  I    ++ +     +  E+   LI +D+ + V ++ V+++  +  
Sbjct: 2   AFEGLAERLQGTIQKIKGKGKVSEQDVKEMMREVRFALIEADVNLKVVKEFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + +++     P  ++ +  P VI++VG+ G GKTT  GK
Sbjct: 62  GVDVMQSLTPGQQVIKIVQDELTELMGGEQSPIKFN-TKPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AA+ QL+    + S              +A +A ++A
Sbjct: 121 LANVLRKKYNRKPLLVAADVYRPAAVQQLETLGKQLSLPVFSLGTDISPVEIARQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV+IIDTAGRLH +  LM  +  +  + +      P  V  V+DA TGQ+A+   
Sbjct: 181 KEEHHDVVIIDTAGRLHIDEDLMQELKDIRALKE------PDEVFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+   G TG+++TK+DG  RGG  + I    + P+ F+G+GE ++ LEPF  +  ++ 
Sbjct: 235 ESFNEAIGITGVVLTKLDGDTRGGAALSIRSVTQKPIKFVGMGEKMDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|124268404|ref|YP_001022408.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methylibium
           petroleiphilum PM1]
 gi|124261179|gb|ABM96173.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methylibium
           petroleiphilum PM1]
          Length = 457

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 15/303 (4%)

Query: 22  ASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ S +L   +  +    R+ +     +  E+   L+ +D+ + V +  +  +  K   +
Sbjct: 3   SALSERLSRLVKTMRGQARITEDNVQDMLREVRMALLEADVALPVVRDFIARVKEKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q ++  V + +   +           +  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVVGSLSPGQALVGVVHKELAATMGAGGVAELNLATQPPAVILMAGLQGAGKTTTTAKLA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           + +     KV+  +GD +R AAI+QLK    +  A++  S+       +A  A   A+  
Sbjct: 123 RHLIGRKKKVLTVSGDVYRPAAIEQLKTVTQQAGAEWFPSQASDQPVDIALAAVDYAKKH 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DVL++DTAGRL  +  +MA I  +   L       P   L V+DA  GQ+A+   + F
Sbjct: 183 YFDVLLVDTAGRLAIDEAMMAEIRALHAALN------PIETLFVVDAMQGQDAINVAKAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                 TG+++TK+DG +RGG  + +      P+ F GV E I+ LE F A+  +  + G
Sbjct: 237 KEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPIKFAGVSEKIDGLELFDAERHAGRVLG 296

Query: 313 CLD 315
             D
Sbjct: 297 MGD 299


>gi|219682754|ref|YP_002469137.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|219620404|gb|ACL28561.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|289178052|gb|ADC85298.1| signal recognition particle, subunit Ffh/Srp54 [Bifidobacterium
           animalis subsp. lactis BB-12]
          Length = 590

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 148/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L D   +    E+   L+ +D+ + V +     +  + 
Sbjct: 45  AAFSSLTDRLSNAFKHLKSKGKLSDADIDGTIREIRRALLDADVSLDVVRSFTARVRDRA 104

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            + +VS      Q+V+  V++ +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 105 LSTEVSEALNPAQQVVRIVNDELTDILGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 163

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CS 172
           GKL   + D+G   +L A D  R  A+ QL++  +R                        
Sbjct: 164 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLEVVGERAGVPVYAPEKGVQSAGGDAVSAPG 223

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E   D   +A ++ + A+ K  D +IIDTAGRL  +  LM     +       D   P+ 
Sbjct: 224 ETTGDPVKVARDSIEYARQKMYDTVIIDTAGRLGVDETLMQQARDI------RDAVQPNE 277

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL V+DA TGQ+A+R  + F      TG++++K+DG  RGG  + +      P+ F   G
Sbjct: 278 VLFVIDAMTGQDAVRTAQAFDEGVNFTGVVLSKLDGDTRGGAALSVASVTGKPILFASNG 337

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 338 EGLKDFEVFHPDRMASRILDMGD 360


>gi|148555568|ref|YP_001263150.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sphingomonas
           wittichii RW1]
 gi|148500758|gb|ABQ69012.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sphingomonas
           wittichii RW1]
          Length = 491

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 158/305 (51%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L++  VRE + +    L+ +D+ + V ++ VE++  +   
Sbjct: 2   FESLSERLGGVFDRLRGRGALNESDVREAMREVRVALLEADVALPVVRQFVEKVTEQAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q+V+  V++ + +ML   +   N D +  P ++++VG+ G GKTT   K+
Sbjct: 62  QQVLRSVTPGQQVVKIVNDALVEMLGSEASDLNLDVT-PPAIVMMVGLQGSGKTTTTAKI 120

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++S+ G  KVM+A+ D  R AA +QL +   + S   +    G     +A  A + A+
Sbjct: 121 AKRLSEKGRKKVMMASLDVNRPAAQEQLAVLGTQASVATLPIVAGQQPVDIARRALQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGRLH +  LM  +  +  V +      P  +L V+DA TGQ+A+   +
Sbjct: 181 LQGFDVLMLDTAGRLHVDQALMEEMKAVATVAE------PEEILLVVDALTGQDAVNVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++T+MDG ARGG  + +      P+ F+G GE ++ +E F     +  I
Sbjct: 235 SFSEQVALTGVVLTRMDGDARGGAALSMRAVTGKPIKFVGTGEKLDGIELFQPARVAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|78779766|ref|YP_397878.1| signal recognition particle protein [Prochlorococcus marinus str.
           MIT 9312]
 gi|78713265|gb|ABB50442.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Prochlorococcus marinus str. MIT 9312]
          Length = 489

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++ +       +E++  L+ +D+ ++V ++ + ++  K   
Sbjct: 2   FDELSSRFEDAVKGLRGEAKISENNINDALKEVKRALLDADVSLSVVKEFISDVKDKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V++ +  ++   + P N + S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  EEVVRGVNPGQKFIEVVNKELINIMGNENSPLNENQS-SPTVILMAGLQGAGKTTATGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQ 190
              + +   KV+L A D +R AA++QLK    +   +     E  S    +  +A   A 
Sbjct: 121 GLYLKEKDKKVLLVAADIYRPAAVEQLKTLGSQYDLEVFSAKEKNSKPEEITKDALNYAN 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               + +IIDTAGRL  +  +M+ + ++  V        P  VL V+D+  GQ A    +
Sbjct: 181 ENNFNSIIIDTAGRLQIDDSMMSEMVRIKEVSN------PDEVLLVVDSMIGQEAADLTK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G +G I+TK+DG +RGG  + I      P+ F+GVGE I  L+PF  +  ++ I
Sbjct: 235 SFHEKVGISGAILTKLDGDSRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|148251976|ref|YP_001236561.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Bradyrhizobium sp. BTAi1]
 gi|146404149|gb|ABQ32655.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Bradyrhizobium sp. BTAi1]
          Length = 515

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 136/305 (44%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +     L +   +    E+   L+ +D+ + V +   E +  +   
Sbjct: 2   FDNLSERLGGILDRLTGRGSLSEADVDAAMREVRRALLEADVALEVVRSFTERVREQAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + + K L    +  + +    P  I++VG+ G GKTT   KL
Sbjct: 62  ATVVKSVTPGQMVVKIVHDELVKTLGDDGQTIDLNAV-PPVPIMMVGLQGSGKTTTTAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++M      KV++A+ D +R AA++QL +         +    G     +A  A + A+
Sbjct: 121 ARRMVQRDKRKVLMASLDVYRPAAMEQLAVLGRDLDIPTLPIVAGQMPPQIARRAIEAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  +M    ++  V        PH VL V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRTTLDEDMMKEAAEIKAVAN------PHEVLLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+ +T++DG  RGG  + +      P+  LG GE  + LE F     +  I
Sbjct: 235 AFDQRVGLTGIALTRIDGDGRGGAALSMRAVTGKPIKLLGTGEKTDALEDFYPSRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|21230651|ref|NP_636568.1| signal recognition particle protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769354|ref|YP_244116.1| signal recognition particle protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992540|ref|YP_001904550.1| signal recognition particle protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112236|gb|AAM40492.1| signal recognition particle protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574686|gb|AAY50096.1| signal recognition particle protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734300|emb|CAP52510.1| signal recognition particle protein [Xanthomonas campestris pv.
           campestris]
          Length = 458

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   +  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTMERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVLKSLTPGQALIKIVRDELTAVMGAAAADLNLNVPA-PAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K M +   K VM+ + D +R AAI+QLK  A++    F  S+       +   A   A+
Sbjct: 121 AKHMKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSDASQKPVDIVRAAISDAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  ++ +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KSFADVLLVDTAGRLAIDAAMMDEIKALHAAVN------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+G GE  + L+ F     ++ I
Sbjct: 235 AFGEALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVFHPDRVASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|19704725|ref|NP_604287.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|296328503|ref|ZP_06871023.1| signal recognition particle protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|19715045|gb|AAL95586.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|296154409|gb|EFG95207.1| signal recognition particle protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 444

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + ++    I    +L +        E++  L+ +D+   V +     +  K   
Sbjct: 2   LENLGNRFQDIFKKIRGHGKLSETNIKDALREVKMSLLEADVNYKVVKDFTNRISEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V++ + ++L   S        + P +I++ G+ G GKTT   KL
Sbjct: 62  TEVIRGVNPAQQFIKLVNDELVELLGGTSSKLTKGLRN-PTIIMLAGLQGAGKTTFAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K++L   D +R AAI QL++   +   D    E   D   +A  A ++A+ 
Sbjct: 121 AKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVDVYSEEDNKDVVGIATRAIEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +I+DTAGRLH +  LM  + ++ + +K      P  +L V+DA  GQ+A+   E 
Sbjct: 181 INATYMIVDTAGRLHVDETLMDELKELKKAIK------PQEILLVVDAMIGQDAVNLAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+I+TK+DG  RGG  + I      P+ F+GVGE +ND+E F      + I 
Sbjct: 235 FNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKFIGVGEKLNDIEIFHPDRLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|257063724|ref|YP_003143396.1| signal recognition particle subunit FFH/SRP54 (srp54) [Slackia
           heliotrinireducens DSM 20476]
 gi|256791377|gb|ACV22047.1| signal recognition particle subunit FFH/SRP54 (srp54) [Slackia
           heliotrinireducens DSM 20476]
          Length = 478

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 137/304 (45%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+   + +    RL +        E+   L+ +D+   V ++   +   +   
Sbjct: 2   FESLSDRLQNIFSGLRGKGRLTEDDINSAMREIRMALLEADVNFKVVKQFTADTKQRCLE 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + + K+L       N   S  P+VI++VG+ G GKTT   KL
Sbjct: 62  AEVLESLTPAQNVVKIVLDELTKLLGENDAKLNTS-SRIPNVIMLVGLQGSGKTTAAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L AGD +R AA DQL+             + G D   +A +  + A  
Sbjct: 121 AYLLKGKGHVPLLVAGDVYRPAAADQLETLGGEIGVKVFRGD-GKDPVQIAKDGVRYAID 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRLH +  +M     +   +K      P  +L V+DA TGQ+ +     
Sbjct: 180 NLRDVVIVDTAGRLHVDEQMMDEAAAIKEAVK------PEEILMVVDAMTGQDVVNVASA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G+IM+KMDG ARGGG + +      P+ F+  GE  + LE F     +  I 
Sbjct: 234 FAEKVEFDGVIMSKMDGDARGGGALSLKQVTGKPIKFISAGEKPDSLEEFHPDRMAKRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|225677364|ref|ZP_03788335.1| signal recognition particle docking protein FtsY [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225590591|gb|EEH11847.1| signal recognition particle docking protein FtsY [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 303

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 134/304 (44%), Positives = 191/304 (62%), Gaps = 3/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S    L KG   TS +   G+  I S  ++LD  + +ELE+LLI  DIG   ++ I++ 
Sbjct: 1   MSLFGNLYKGLLKTSSRFSNGVKSIFSNKKKLDQSLLDELEELLISMDIGHKTSKLIIDR 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + ++ K+V    +   +   I  +L P+ +P   +   +PH+I+V GVNG GKTT IG
Sbjct: 61  LTSIKFDKEVEYNIISQQLMNEIEAILSPVVQPLILN--KKPHIIMVCGVNGNGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K  + G  VML A DTFR+AA +QL IWA+R+    V  E GSD+A++AY A  QA
Sbjct: 119 KLAYKYKEMGKSVMLVACDTFRAAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
               VDV++IDTAGRL NN  LM  + K+ R +K+LD  APH V+ VLDATTGQNA  Q+
Sbjct: 179 IKDNVDVVLIDTAGRLQNNVNLMEELSKIYRTIKKLDDTAPHDVILVLDATTGQNAYSQL 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F  +   TGLI+TK+DGTA+GG +I +   +KI ++ +G+GE I DL  F +K+F+  
Sbjct: 239 EAFSKMVNVTGLIVTKLDGTAKGGVVIGLAEAYKIKLHAIGIGENIEDLREFTSKEFAEA 298

Query: 310 ITGC 313
           +  C
Sbjct: 299 LFNC 302


>gi|225870866|ref|YP_002746813.1| cell division protein FtsY [Streptococcus equi subsp. equi 4047]
 gi|225700270|emb|CAW94513.1| putative cell division protein FtsY [Streptococcus equi subsp. equi
           4047]
          Length = 485

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 167/300 (55%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE+LLI SD+GV VA  + EEL  +
Sbjct: 182 EKYKRSLKKTRTGFSARLNSFFANFRRVDEDFFEDLEELLILSDVGVHVATTLTEELRYE 241

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+              +     V+L VGVNGVGKTT IGKL
Sbjct: 242 AKLENAKKPEALKRLIIDKLVAIYEGDGRYNEAIHYQPGLTVMLFVGVNGVGKTTSIGKL 301

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 302 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGVERAVA 361

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ D+L+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 362 ERADILLIDTAGRLQNKDNLMAELEKIGRIIKRVIPDAPHETLLALDASTGQNALSQAKE 421

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV  +G GE I+D+  F ++DF   + 
Sbjct: 422 FSKITPLTGLILTKIDGTAKGGIVLAIRQELDIPVKLIGFGEAIDDIGEFHSEDFMKGLL 481


>gi|221194740|ref|ZP_03567797.1| signal recognition particle protein [Atopobium rimae ATCC 49626]
 gi|221185644|gb|EEE18034.1| signal recognition particle protein [Atopobium rimae ATCC 49626]
          Length = 459

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 133/304 (43%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +LK     +    RL +        E+   L+ +D+   V +  V     +   
Sbjct: 2   FNSLQDRLKNTFDALRGKGRLTEDDINVAMREIRMALLEADVNYRVVKNFVARCKEQCLT 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V   +  +L           +  P+VI++VG+ G GKTT   KL
Sbjct: 62  AEVLDSLSPAQNVVRIVLNELTSLLGSTESKLTLAQNRIPNVIMLVGLQGSGKTTAAAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +LAA D  R AA DQL+             +    A A+A  + +QA  
Sbjct: 122 AYLLKSEGKHPLLAACDVHRPAAADQLETLGSEIEVPVYRGDGRD-AVAIASASIQQAVD 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRL  +  +M     + + +K      P  +L V+DA TGQ+ +  V  
Sbjct: 181 NMNDIVIVDTAGRLQIDEEMMQEAVAIKQAVK------PDQILMVVDAMTGQDIVNVVTT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G+IM+K+DG ARGGG + +      PV F+ +GE  + LE F     +  I 
Sbjct: 235 FAERVDFDGVIMSKLDGDARGGGALSVREVTGKPVKFVSMGEKPDSLEVFHPDRMAKRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|311745775|ref|ZP_07719560.1| signal recognition particle-docking protein FtsY [Algoriphagus sp.
           PR1]
 gi|126575974|gb|EAZ80252.1| signal recognition particle-docking protein FtsY [Algoriphagus sp.
           PR1]
          Length = 318

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 121/311 (38%), Positives = 182/311 (58%), Gaps = 11/311 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
            +  K     L +G   +S  +   ++  ++   ++D+ V +ELE++LI SD+GV    K
Sbjct: 5   GFFSKDKKESLDQGLQKSSENIFSKLSKAVVGKSKVDEEVLDELEEILITSDVGVDTTIK 64

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           ++  +  +    K V+ + +   + E I  +L   +      F+     +P+VI+VVGVN
Sbjct: 65  VINRIEERVARDKYVNTEELDKILKEEISGLLEENNTQDLLDFDIPEGKKPYVIMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+     AG  V+L A DTFR+AA+DQL +W DR     +   + +D A+
Sbjct: 125 GVGKTTTIGKLANLFKSAGKNVILGAADTFRAAAVDQLILWGDRVGVPVISHGMNTDPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++A KQ    + DV+IIDTAGRLH    LM  +GK+ RV+++  P APH +L VLD +
Sbjct: 185 VAFDAVKQGVDTQADVVIIDTAGRLHTKVNLMNELGKIKRVMQKFIPDAPHEILLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F  V   T L +TK+DGTA+GG +I I    KIPV ++GVGE + DL+ 
Sbjct: 245 TGQNAFIQAKEFTKVTEITSLAITKLDGTAKGGVVIGISDQFKIPVKYIGVGEKMTDLQL 304

Query: 301 FVAKDFSAVIT 311
           F  K+F   + 
Sbjct: 305 FNRKEFVDSLF 315


>gi|116873238|ref|YP_850019.1| cell division ABC transporter, substrate- binding protein FtsY
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742116|emb|CAK21240.1| cell division ABC transporter, substrate-binding protein FtsY
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 328

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 123/309 (39%), Positives = 187/309 (60%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             K+  ++ +   K   G + T       I ++++  R++D+   EELE++LI +D+G  
Sbjct: 8   KDKITQQTDAVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFE 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFS-HRPHVILVVG 118
              ++V+ L  +   +++S  + +    V +L+       ++    +   +   VIL VG
Sbjct: 68  TVMELVDALRREVQLRNISDPKDVQEVIVEKLVDIYQGDENEDETLNIEENGLTVILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGK++ +    G KVMLAAGDTFR+ AIDQL++W +RT  D +    GSD 
Sbjct: 128 VNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL VLD
Sbjct: 188 AAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLVLD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE ++DL
Sbjct: 248 ATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMDDL 307

Query: 299 EPFVAKDFS 307
           + F A ++ 
Sbjct: 308 QAFDANEYV 316


>gi|46908034|ref|YP_014423.1| cell division ABC transporter substrate-binding protein FtsY
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093842|ref|ZP_00231586.1| cell division ABC transporter, substrate-binding protein FtsY
           [Listeria monocytogenes str. 4b H7858]
 gi|217964045|ref|YP_002349723.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes HCC23]
 gi|226224406|ref|YP_002758513.1| SRP receptor alpha-subunit [Listeria monocytogenes Clip81459]
 gi|254826155|ref|ZP_05231156.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL J1-194]
 gi|254829201|ref|ZP_05233888.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL N3-165]
 gi|254852711|ref|ZP_05242059.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL R2-503]
 gi|254933275|ref|ZP_05266634.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes HPB2262]
 gi|255521156|ref|ZP_05388393.1| SRP receptor alpha-subunit [Listeria monocytogenes FSL J1-175]
 gi|290893067|ref|ZP_06556056.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL J2-071]
 gi|300763884|ref|ZP_07073881.1| cell division ABC transporter, substrate-binding protein FtsY
           [Listeria monocytogenes FSL N1-017]
 gi|46881304|gb|AAT04600.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47017783|gb|EAL08572.1| cell division ABC transporter, substrate-binding protein FtsY
           [Listeria monocytogenes str. 4b H7858]
 gi|217333315|gb|ACK39109.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes HCC23]
 gi|225876868|emb|CAS05577.1| Putative SRP receptor alpha-subunit [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258601613|gb|EEW14938.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL N3-165]
 gi|258606032|gb|EEW18640.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL R2-503]
 gi|290557427|gb|EFD90952.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL J2-071]
 gi|293584835|gb|EFF96867.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes HPB2262]
 gi|293595395|gb|EFG03156.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes FSL J1-194]
 gi|300515620|gb|EFK42670.1| cell division ABC transporter, substrate-binding protein FtsY
           [Listeria monocytogenes FSL N1-017]
 gi|307571385|emb|CAR84564.1| cell division ABC transporter, substrate-binding protein [Listeria
           monocytogenes L99]
 gi|328466159|gb|EGF37316.1| signal recognition particle-docking protein FtsY [Listeria
           monocytogenes 1816]
 gi|332312244|gb|EGJ25339.1| FtsY [Listeria monocytogenes str. Scott A]
          Length = 328

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 188/312 (60%), Gaps = 10/312 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G  
Sbjct: 8   KDKITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFE 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVIL 115
              ++V+ L  +   +++S      DV E+I + L+ + +    +            VIL
Sbjct: 68  TVMELVDTLRREVQLRNISDP---KDVQEVIVEKLVEIYQGDEKEDEALHIEEDGLTVIL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AIDQL++W +RT  D +    G
Sbjct: 125 FVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ ++A + A+A+K DVL+ DTAGRL N   LM  + K+ RV+ R  P+APH VL 
Sbjct: 185 SDPAAVMFDAVQAAKARKADVLLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE +
Sbjct: 245 VLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQM 304

Query: 296 NDLEPFVAKDFS 307
           +DL+ F A ++ 
Sbjct: 305 DDLQAFDANEYV 316


>gi|291515775|emb|CBK64985.1| signal recognition particle subunit FFH/SRP54 (srp54) [Alistipes
           shahii WAL 8301]
          Length = 443

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + KL+     +    R+ +       +E+   LI +D+   VA+   +E+  K   
Sbjct: 2   FENLTDKLERSFKILKGEGRITEINVAETLKEIRRALIDADVNYKVAKTFTDEVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q +   V + + +++   +     + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QDVLKAVKPGQMMTKIVRDELAELMGGTATDIRLEGT--PAVILIAGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +    G +V+L AGD +R AAIDQLK+   +   +    E   +   +A    K A+
Sbjct: 120 ASLLKSKKGRQVLLVAGDVYRPAAIDQLKVLGGQIGVEVYTEEGNRNPVEIAENGIKYAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  +V+I+DTAGRL  +  +M  I  +   +K      P   L V+DA TGQ+A+    
Sbjct: 180 QKNYNVVIVDTAGRLAVDEAMMQEITAIKAAVK------PSETLFVVDAMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  I I      P+ F+  GE ++ L+ F  +  +  I
Sbjct: 234 EFNERLDFDGVVLTKLDGDTRGGAAISIRSVVNKPLKFISSGEKMDALQVFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|269215483|ref|ZP_06159337.1| signal recognition particle protein [Slackia exigua ATCC 700122]
 gi|269130970|gb|EEZ62045.1| signal recognition particle protein [Slackia exigua ATCC 700122]
          Length = 472

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 134/304 (44%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S S +L+     + S  RL     D    E+   L+ +D+   V +  V +   +   
Sbjct: 2   LESLSDRLQGVFGGLKSKGRLTPDDIDAAMREVRMALLEADVNYKVVKTFVAKTKERCMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q V+  V + + ++L   S       S  P+VI++VG+ G GKTT   KL
Sbjct: 62  ADVLESLTPAQNVVKIVLDELTELLGGTSSRMVL-TSRIPNVIMLVGLQGSGKTTAAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A DT+R AA DQL+             + G+    +A E  + A  
Sbjct: 121 AYLLKSKGHSPLLVACDTYRPAAADQLETLGSEIGVKVFRGD-GAHPVGIAQEGVRFAID 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  +  +MA    +   ++      P  +  V+DA TGQ  +     
Sbjct: 180 NLRDVVIVDTAGRLQVDEAMMAEAADIKAAVE------PDQIFMVVDAMTGQEIVNVASA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G I++KMDG ARGGG + ++     P+ F+  GE  + LE F     +  I 
Sbjct: 234 FAERVDFDGAIVSKMDGDARGGGALSLMQVTGKPIKFISAGEKPDSLEEFHPDRMAKRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|260912277|ref|ZP_05918828.1| signal recognition particle protein Ffh [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260633578|gb|EEX51717.1| signal recognition particle protein Ffh [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 450

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     I    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKIIKGEGKITEINVAETLKDVRRALLDADVNYKVAKTFTDTVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + +  ++   S        +RP +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIVHDELATLMGGES--VGLQLKNRPAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AAI+QLK+ A +            +   +A  A ++A+
Sbjct: 120 ANLLKSKQHKNPLLVACDVYRPAAIEQLKVVAQQVGVSVYSEPDNKNVVEIANNAIREAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +K  DV+I+DTAGRL  +  +M  I ++ + L       P   L V+D+ TGQ+A+    
Sbjct: 180 SKGNDVVIVDTAGRLAVDEEMMDEIYRLKQALN------PDETLFVVDSMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F  +  +  I
Sbjct: 234 EFNDRLDIDGVVLTKLDGDTRGGAALSIRTVVTKPIKFVGTGEKMEAIDVFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|313839842|gb|EFS77556.1| signal recognition particle protein [Propionibacterium acnes
           HL086PA1]
          Length = 528

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L      +    RL D   +    ++   L+ +D+ ++V ++ V  +  + + 
Sbjct: 2   FDTLQDRLASTFKGLRGKGRLTDADIDATTRQIRIALLEADVNLSVVKEFVAAIKERCHG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++S      Q+++  V+E + ++L   ++   +     P ++++ G+ G GKTT+ GKL
Sbjct: 62  EELSKALNPTQQIVKIVNEELVEILGGQTRTVRF-AKTPPTIVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++   + G   +LAA D  R  A+ QL++  +R        E G+   D   +A +A  +
Sbjct: 121 ARWFKEEGHSPLLAACDLQRPNAVTQLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+IIDTAGRL  ++ +MA    +           P   L V+DA  GQ+A+  
Sbjct: 181 AEHKLYDVVIIDTAGRLGVDAEMMAQAADIKTATD------PDETLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+++TK+DG ARGG  + I      P+ F   GEG+ D + F     ++
Sbjct: 235 AVAFQEGVGFDGVVLTKLDGDARGGAALSIARVVGKPIMFASSGEGLKDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|253581989|ref|ZP_04859213.1| IISP Type II signal recognition particle GTPase [Fusobacterium
           varium ATCC 27725]
 gi|251836338|gb|EES64875.1| IISP Type II signal recognition particle GTPase [Fusobacterium
           varium ATCC 27725]
          Length = 446

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + +E    +    +L +       +E+   L+ +D+   V +    ++L K   
Sbjct: 2   LDNLGSRFQEIFKKVRGHGKLSESNIKEALKEVRMSLLEADVNYKVVKDFTNKILEKSVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+ +  V++ + ++L   +        + P V+++ G+ G GKTT   KL
Sbjct: 62  TDVLKGINPGQQFIKVVNDELVELLGGTNSRLTKGVRN-PTVLMLSGLQGAGKTTFAVKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G  V++   D +R AAI QL++  ++ +      E   D  A+      +A+ 
Sbjct: 121 ANYLKKQGESVLMVGADVYRPAAIKQLQVLGEQINVPVYAEEDNKDTVAICEHGLAKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +IIDTAGRLH +  LM  +  + + +       P  +L V+DA  GQ+A+   E 
Sbjct: 181 LNSTYMIIDTAGRLHIDEKLMEELRSIKKAV------RPQEILLVVDAMIGQDAVNLAEA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ V    G+++TK+DG  RGG  + I      P+ F+GVGE I+D+E F  +   + I 
Sbjct: 235 FNNVLSIDGIVLTKLDGDTRGGAALSIKSVVGKPIKFVGVGERIDDIELFHPERLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|295105977|emb|CBL03520.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 471

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 134/304 (44%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + S +L+   + +    RL +        E+   L+ +D+   V +  +     +   
Sbjct: 2   LENLSERLQGIFSGLRGKGRLTEDDINDAMREIRMALLEADVNFKVVKGFIARTKERCLE 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + + ++L           S  P+VI++VG+ G GKTT   KL
Sbjct: 62  AEVLDSLTPAQNVIKIVLDELTELLGRTDSKLVLG-SRIPNVIMLVGLQGSGKTTAAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++       +L A D +R AA DQL+             + G D   +A E  + A  
Sbjct: 121 AYRLKQENHSPLLVACDVYRPAAADQLQTLGGEIGVRVYRGD-GQDPVRIATEGVQDAID 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRLH +  +M     + R +K      P  +L V+DA TGQ+ +     
Sbjct: 180 NLRDVVIVDTAGRLHVDDEMMDEAEAIKRAVK------PDQILMVVDAMTGQDVVNVSAA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G+IM+KMDG ARGGG + I      P+ F+  GE  + LE F     +  I 
Sbjct: 234 FAERVDFDGVIMSKMDGDARGGGALSIKQVTGKPIKFISSGEKPDSLEEFHPDRMAKRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|328885329|emb|CCA58568.1| Signal recognition particle, subunit Ffh SRP54 [Streptomyces
           venezuelae ATCC 10712]
          Length = 517

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 146/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +   +    E+   L+ +D+ + V +  ++ +  +   
Sbjct: 2   FDTLSDRLSATFKSLRGKGRLSEQDIDSAAREIRIALLEADVALPVVRAFIKNVKERSLG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V++ +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSKALNPSQQVIKIVNDELISILGGETRRLRF-AKTAPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              +   G   +L A D  R  A++QL + ADR    F   + G+   D   +A ++ + 
Sbjct: 121 GLWLKSQGHSPLLVACDLQRPNAVNQLSVVADRAGVAFYGPQPGNGVGDPVQVAKDSIEH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 ARTKLYDVVIVDTAGRLGIDQELMQQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       + F   GE ++D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGKQIMFASNGEKLDDFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I G  D 
Sbjct: 295 RILGMGDM 302


>gi|212639591|ref|YP_002316111.1| signal recognition particle GTPase [Anoxybacillus flavithermus WK1]
 gi|212561071|gb|ACJ34126.1| Signal recognition particle GTPase [Anoxybacillus flavithermus WK1]
          Length = 446

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  +  I    ++ +     +  E+   L+ +D+   V +  V+++  +  
Sbjct: 2   AFEGLADRLQHVMNKIRGKGKVTEADVKEMMREVRLALLEADVNFKVVKDFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V E + +++   +       +  P V+++VG+ G GKTT  GK
Sbjct: 62  GQEVMKSLTPGQQVIKVVKEELTELMGGENSKIAVS-NRPPTVVMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    + +              +A +A  +A
Sbjct: 121 LANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQLNIPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D ++IDTAGRLH +  LM  + ++  V K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEEHYDYVLIDTAGRLHIDEALMDELKQIKEVTK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+I+TK+DG  RGG  + I      P+ F+G+GE ++ LEPF  +  ++ 
Sbjct: 235 QSFNEQLGLTGVILTKLDGDTRGGAALSIKAVTNTPIKFVGMGEKLDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|237756196|ref|ZP_04584762.1| signal recognition particle-docking protein FtsY
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691643|gb|EEP60685.1| signal recognition particle-docking protein FtsY
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 304

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 116/302 (38%), Positives = 186/302 (61%), Gaps = 2/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            S+  K+ KG   T  +L EG + I   R++D+ + E++E +L+++D+GV   Q+I++ L
Sbjct: 3   KSFFEKVKKGLEKTKKQLAEGFSKISFGRKIDESLFEDIEVVLLKADVGVKATQEIIQFL 62

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   + ++    L ++  E I+ +L        +    +P V+L +G+NG GKTT +G
Sbjct: 63  REESKKRKITEGEQLKELLKEKIYDILKDCEGRLTF-LGEKPDVLLFLGINGSGKTTTVG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+  +   G  V+LAA DTFR+AAIDQL++WA+R     V  + G+D +A+ ++A   A
Sbjct: 122 KLAYMLKQDGKSVVLAAADTFRAAAIDQLEVWANRVGVRIVKHQQGADPSAVVFDAINSA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +AK  DV+I+DTAGRLH    LM  + K+ + + +   + P   L VLD T GQN++ Q 
Sbjct: 182 KAKGDDVVIVDTAGRLHTKEHLMKELQKIKKTIAKFFENQPVETLLVLDGTIGQNSINQA 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      +G+I+TK+DGT++GG +IPI    KIP+ F+GVGEGI+DL+PF AK+F   
Sbjct: 242 KTFKEATDVSGIIITKLDGTSKGGAIIPICKDLKIPIKFIGVGEGIDDLQPFDAKEFVDA 301

Query: 310 IT 311
           + 
Sbjct: 302 LF 303


>gi|195978483|ref|YP_002123727.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975188|gb|ACG62714.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 485

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 167/300 (55%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE+LLI SD+GV VA  + EEL  +
Sbjct: 182 EKYKRSLKKTRTGFSARLNSFFANFRRVDEDFFEDLEELLILSDVGVHVATTLTEELRYE 241

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+              +     V+L VGVNGVGKTT IGKL
Sbjct: 242 AKLENAKKPEALKRLIIEKLVAIYEGDGRYNEAIHYQQDLTVMLFVGVNGVGKTTSIGKL 301

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 302 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGVERAVA 361

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ D+L+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 362 ERADILLIDTAGRLQNKDNLMAELEKIGRIIKRVIPDAPHETLLALDASTGQNALSQAKE 421

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV  +G GE I+D+  F ++DF   + 
Sbjct: 422 FSKITPLTGLILTKIDGTAKGGIVLAIRQELDIPVKLIGFGEAIDDIGEFHSEDFMKGLL 481


>gi|303273580|ref|XP_003056150.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
 gi|226462234|gb|EEH59526.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
          Length = 559

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 142/308 (46%), Gaps = 17/308 (5%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD-DGV---REELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F + S +L    + +     L  + +    +++   L+ +D+ + V ++ ++ +  K 
Sbjct: 75  DSFGTLSERLNSAWSALKDEDDLSVENISLPLKDIRRALLEADVSLPVVRRFIKSVEEKS 134

Query: 75  YAKDVSV-----QRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTV 127
               V+      Q++   V++ + +++      K         P VIL+ G+ GVGKTT 
Sbjct: 135 IGVKVTKGVSASQQLTKVVADELCELMGGFGGDKLIFRKEGEGPTVILMAGLQGVGKTTA 194

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+  +   G + +L A D +R AAIDQLK   ++                +A    +
Sbjct: 195 CGKLALFLKAQGKQSLLVATDVYRPAAIDQLKKLGEQIDVPVFELGTDFSPPDIARSGVE 254

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+ +  DV+I+DTAGRL  + +LMA +                  L V+DA TGQ A  
Sbjct: 255 KAKLENFDVVIVDTAGRLQVDEMLMAELLATKAA------TRADETLLVVDAMTGQEAAS 308

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F+   G TG ++TKMDG  RGG  + +      P+ F+G GE ++ LEPF  +  +
Sbjct: 309 LTAAFNDAVGITGAVLTKMDGDTRGGAALSVREVSGKPIKFIGSGEKLDALEPFFPERMT 368

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 369 TRILGMGD 376


>gi|21242042|ref|NP_641624.1| signal recognition particle protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107444|gb|AAM36160.1| signal recognition particle protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 458

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   +  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTMERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELTAVMGAAATDLNLNVPA-PAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QLK  A++    F  S+       +   A   A+
Sbjct: 121 AKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  ++ +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDAAMMDEIKALHAAVN------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+G GE I+ L+ F     ++ I
Sbjct: 235 AFGEALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGTGEKIDGLDVFHPDRVASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|262067701|ref|ZP_06027313.1| signal recognition particle-docking protein FtsY [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378426|gb|EFE85944.1| signal recognition particle-docking protein FtsY [Fusobacterium
           periodonticum ATCC 33693]
          Length = 368

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 121/297 (40%), Positives = 181/297 (60%), Gaps = 3/297 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +++    +       + +I +S+ ++DD + EELEDLLI+SD+G+ +   ++ EL  K  
Sbjct: 72  ISQRLTKSKEGFFSKLKNIFTSKSKIDDSIYEELEDLLIQSDVGLGMTTNLINELEKKVK 131

Query: 76  AKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           A  +S    +Y  + +L+   L+      +    ++ +VIL+VGVNGVGKTT IGKL+ K
Sbjct: 132 ANKISETSEVYEILKDLMSDFLLSQDSKVHLK-DNKINVILIVGVNGVGKTTTIGKLALK 190

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G KV+L AGDTFR+AA++QL+ WA R   D V    G+D A++ Y+   +A+A K 
Sbjct: 191 YKKIGKKVLLGAGDTFRAAAVEQLEEWARRADVDIVKGREGADPASVVYDTLSKAEATKA 250

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D TTGQN L Q + F++
Sbjct: 251 DVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAKEFNS 310

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL  F AKDF   I 
Sbjct: 311 VTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIEDLIEFNAKDFVEAIF 367


>gi|318056560|ref|ZP_07975283.1| signal recognition particle protein [Streptomyces sp. SA3_actG]
 gi|318080610|ref|ZP_07987942.1| signal recognition particle protein [Streptomyces sp. SA3_actF]
 gi|333024175|ref|ZP_08452239.1| putative signal recognition particle protein [Streptomyces sp.
           Tu6071]
 gi|332744027|gb|EGJ74468.1| putative signal recognition particle protein [Streptomyces sp.
           Tu6071]
          Length = 513

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 147/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +   +    E+   L+ +D+ + V +  ++++  +   
Sbjct: 2   FDTLSDRLSATFKSLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIKKVKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  EEVSKALNPAQQVIKIVNEELVGILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G   +L A D  R  A++QL + A+R        + G+   D   +A ++ + 
Sbjct: 121 GRWLQGQGHSPLLVACDLQRPNAVNQLSVVAERAGVGIYAPQPGNGVGDPVQVAKDSVEY 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+ DV+I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 ARTKQFDVVIVDTAGRLGIDQELMRQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       V F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGKQVMFASNGEKLEDFDAFHPDRMAS 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|238854767|ref|ZP_04645097.1| signal recognition particle protein [Lactobacillus jensenii 269-3]
 gi|260663999|ref|ZP_05864852.1| signal recognition particle protein [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933845|ref|ZP_06339193.1| signal recognition particle protein [Lactobacillus jensenii 208-1]
 gi|313472284|ref|ZP_07812776.1| signal recognition particle protein [Lactobacillus jensenii 1153]
 gi|238832557|gb|EEQ24864.1| signal recognition particle protein [Lactobacillus jensenii 269-3]
 gi|239529871|gb|EEQ68872.1| signal recognition particle protein [Lactobacillus jensenii 1153]
 gi|260561885|gb|EEX27854.1| signal recognition particle protein [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301934|gb|EFA94188.1| signal recognition particle protein [Lactobacillus jensenii 208-1]
          Length = 475

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 157/306 (51%), Gaps = 18/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S ++++ + ++    ++ +        E+   L+ +D+   V +  ++++  +  
Sbjct: 2   AFENLSERIQKALKNLTGKGKVSEADINAASREIRLALLEADVNFKVVKDFIKKIKERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+++  V++ + KM+   +   N    H P +I++VG+ G GKTT +GK
Sbjct: 62  GQEVQGSLTPGQQIIKIVNDELTKMMGEEAAKLN-KAPHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K + D    + +L AGD +R AAIDQLK   D+ S     SE   D A +  +   QA
Sbjct: 121 LAKYLMDTEKARPLLIAGDIYRPAAIDQLKQIGDQLSVPVF-SEDEKDVAKIVADGLAQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +  K D ++IDTAGRL  +  LM  + ++  V K      P +++ V+DA TGQ   +  
Sbjct: 180 KEAKNDYVLIDTAGRLEIDEALMEELERVKAVAK------PDNIVLVVDAMTGQVGAQVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      TG+I+TK+DG  RGG  + I      P+ F G GE +++LE F     ++ 
Sbjct: 234 ETFDKRLDVTGVILTKLDGDTRGGAALSIRAVTGKPILFTGQGEKLSELEGFYPDRMASR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|217967920|ref|YP_002353426.1| signal recognition particle protein [Dictyoglomus turgidum DSM
           6724]
 gi|217337019|gb|ACK42812.1| signal recognition particle protein [Dictyoglomus turgidum DSM
           6724]
          Length = 436

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 152/312 (48%), Gaps = 20/312 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L+E    +    +L +        E+   L+ +D    V ++++  + TK   
Sbjct: 2   FENLTSRLQEIFRKLRGKGKLTEKDIEEALREVRQALLEADAHYKVVKELLNNVKTKALQ 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       ++++  +   +  +L       N     +P +ILVVG+ G GKTT   KL
Sbjct: 62  EDVLKSVTPAEQIIRILYYELLNILGGEKVDLNLG-DKKPGIILVVGLQGSGKTTTCAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++S    +V+L   DTFR AA  QL+I  ++           S+   +   A K A+ 
Sbjct: 121 AYRLSQEQRRVLLVGADTFRPAAGKQLQILGEKIKVPVYIDG--SNPFEIIDGALKVARE 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DV+I+DT GRLH +  +M  + ++ +       + P  +L V+D  TGQ+A+   E 
Sbjct: 179 KFSDVMIVDTTGRLHIDEEMMNELSELNKR------YHPSEILLVVDGMTGQDAVNIAEK 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+I+TKMDG ARGG  + +      P+ F+GVGE I DLE F     ++ I 
Sbjct: 233 FNEKLPLTGVILTKMDGDARGGAALSVKAITGKPIKFIGVGEKIEDLEYFYPDRLASRIL 292

Query: 312 GCLDYGE--EKI 321
           G  D     EKI
Sbjct: 293 GMGDLASLVEKI 304


>gi|315104272|gb|EFT76248.1| signal recognition particle protein [Propionibacterium acnes
           HL050PA2]
          Length = 528

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L      +    RL D   +    ++   L+ +D+ ++V ++ V  +  + + 
Sbjct: 2   FDTLQDRLASTFKGLRGKGRLTDADIDATTRQIRIALLEADVNLSVVKEFVAAIKERCHG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++S      Q+++  V+E + ++L   ++   +     P ++++ G+ G GKTT+ GKL
Sbjct: 62  EELSKALNPTQQIVKIVNEELVEILGGQTRTVRF-AKTPPTIVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++   + G   +LAA D  R  A+ QL++  +R        E G+   D   +A +A  +
Sbjct: 121 ARWFKEEGHSPLLAACDLQRPNAVTQLQVVGERAGVHVFAPEPGNGVGDPIQVARDAVAE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+IIDTAGRL  ++ +MA    +           P   L V+DA  GQ+A+  
Sbjct: 181 AEHKLYDVVIIDTAGRLGVDAEMMAQAADIKAATD------PDETLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+++TK+DG ARGG  + I      P+ F   GEG+ D + F     ++
Sbjct: 235 AVAFQEGVGFDGVVLTKLDGDARGGAALSIARVVGKPIMFASSGEGLKDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|194014405|ref|ZP_03053022.1| signal recognition particle-docking protein FtsY [Bacillus pumilus
           ATCC 7061]
 gi|194013431|gb|EDW22996.1| signal recognition particle-docking protein FtsY [Bacillus pumilus
           ATCC 7061]
          Length = 328

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 122/309 (39%), Positives = 185/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K   ++ S   K   G   T    +  + ++IS  R++D+   EELE++LI +D+G  
Sbjct: 8   KEKFTQQTDSVSEKFKDGLEKTRNSFQGRVNELISRYRKVDEDFFEELEEVLIGADVGFT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
              ++++EL  +   +++     +  V SE + ++     +  +       R ++IL VG
Sbjct: 68  TVMELIDELKKEVKLRNIQDPSEVQSVISEKLVEIYNSGEEQISALNIEDGRLNIILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K+ + G  V+LAAGDTFR+ AI+QL++W +R+    V    GSD 
Sbjct: 128 VNGVGKTTTIGKLANKLKNDGKSVILAAGDTFRAGAIEQLEVWGERSGVPVVKQTAGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+AK  DVLI DTAGRL N   LM  + K+ RV++R  P APH VL  LD
Sbjct: 188 AAVIYDAVQSAKAKNADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPDAPHEVLLALD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I     IPV  +G+GE ++DL
Sbjct: 248 ATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELNIPVKLVGLGEKVDDL 307

Query: 299 EPFVAKDFS 307
           + F A+ + 
Sbjct: 308 QEFDAESYV 316


>gi|225019242|ref|ZP_03708434.1| hypothetical protein CLOSTMETH_03195 [Clostridium methylpentosum
           DSM 5476]
 gi|224947873|gb|EEG29082.1| hypothetical protein CLOSTMETH_03195 [Clostridium methylpentosum
           DSM 5476]
          Length = 302

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 118/302 (39%), Positives = 178/302 (58%), Gaps = 3/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  K+  G   T   + + +  +  S  ++D+ + EELE++LI SD+GV  + KI E 
Sbjct: 1   MGFFDKIKNGLKKTKENMVQKMETVFHSFTKIDEELFEELEEILIMSDVGVNTSMKICET 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +   + ++    +  + + I   ++   +    D   +P VILV+GVNGVGKTT IG
Sbjct: 61  LRKRVKERGITDGSQVKGLLKEIMTEMLTGGEELKIDT--KPSVILVIGVNGVGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+  +   G +V+L A DTFR+AAIDQL+IWADR     V    GSD AA+ ++    A
Sbjct: 119 KLAANLQAQGKQVILGAADTFRAAAIDQLQIWADRAGTKLVKHSEGSDPAAVVFDTLAAA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +++  DV +IDTAGRLHN   LM  + K+ RV++R        VL VLDATTGQN + Q 
Sbjct: 179 KSRGADVAVIDTAGRLHNKKNLMNELEKISRVIEREAEGCDKEVLLVLDATTGQNGVNQA 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F    G TG+++TK+DGTA+GG +I I     +P+ ++GVGE ++DL+PF  + F   
Sbjct: 239 REFMNTTGLTGIVLTKLDGTAKGGVVIAIKDELGLPIKYIGVGEQLDDLQPFEPEAFVNA 298

Query: 310 IT 311
           + 
Sbjct: 299 LF 300


>gi|327399601|ref|YP_004340470.1| signal recognition particle protein [Hippea maritima DSM 10411]
 gi|327182230|gb|AEA34411.1| signal recognition particle protein [Hippea maritima DSM 10411]
          Length = 441

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 97/308 (31%), Positives = 158/308 (51%), Gaps = 17/308 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT+        +K     +I+ + LD+ +RE ++  L+ +D+   V +   +EL  
Sbjct: 1   MFSDLTEKLNDIFKVIKS--KGVITEKDLDNALRE-IKFALLEADVNYKVVKDFTKELKE 57

Query: 73  KRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +   K++       Q V+ +V + + ++L   ++P     +  P +I++VG+ G GKTT 
Sbjct: 58  ELKGKELEKSLTPGQIVVEEVHKKLTEILGGQAQPLT--ITKTPFIIMLVGLQGSGKTTT 115

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+K +   G + +L A D +R AAI QL+I   + + D   S+  S    +A EA  
Sbjct: 116 AAKLAKFLRSKGRQPLLVACDIYRPAAIKQLQILGKQINIDVF-SKENSKPEDIAKEALN 174

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    +V+IIDTAGRLH +  LM  + ++ + ++      P  +L V DA  GQ A+ 
Sbjct: 175 YAKQNGKNVIIIDTAGRLHIDDELMEELERIKQKIE------PDEILFVADAMIGQEAVN 228

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             ++F    G TG I TK+DG ARGG  + I+     P+ F GVGE I+D EPF     +
Sbjct: 229 VAKVFDERVGITGAIFTKLDGDARGGAALSIMKVVGKPIKFAGVGEKISDFEPFYPDRVA 288

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 289 SRILGMGD 296


>gi|315303703|ref|ZP_07874218.1| signal recognition particle-docking protein FtsY [Listeria ivanovii
           FSL F6-596]
 gi|313627930|gb|EFR96548.1| signal recognition particle-docking protein FtsY [Listeria ivanovii
           FSL F6-596]
          Length = 323

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 188/312 (60%), Gaps = 10/312 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G  
Sbjct: 3   KDKITQQTDSVTGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFE 62

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF------SHRPHVIL 115
              ++VE L  +   +++S      DV E+I + L+ + +    +            VIL
Sbjct: 63  TVMELVETLRREVQLRNISDP---KDVQEVIVEKLVDIYQGDEEEEEALHIEKDGLTVIL 119

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AI+QL++W +RT  D +    G
Sbjct: 120 FVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIEQLEVWGERTGVDVIKQAEG 179

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL 
Sbjct: 180 SDPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLL 239

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE +
Sbjct: 240 VLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELHIPVKFVGLGEQM 299

Query: 296 NDLEPFVAKDFS 307
           +DL+ F A ++ 
Sbjct: 300 DDLQAFDANEYV 311


>gi|150390510|ref|YP_001320559.1| signal recognition particle-docking protein FtsY [Alkaliphilus
           metalliredigens QYMF]
 gi|149950372|gb|ABR48900.1| signal recognition particle-docking protein FtsY [Alkaliphilus
           metalliredigens QYMF]
          Length = 423

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 134/309 (43%), Positives = 192/309 (62%), Gaps = 1/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           K     LS  ++L +G + T   +   + +++ S +++D+ + EELE++LI SDIGV   
Sbjct: 112 KEGEGPLSLFKRLKEGLSKTKQGITGKVDELLKSYKKIDEALFEELEEILITSDIGVKTT 171

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +I++ L  K   K VS    + ++ +     ++        +    P ++LVVGVNGVG
Sbjct: 172 MEIIDGLRDKIKEKKVSEPEQVKELLKEALIEILQRLPDAQVNIEPGPAIVLVVGVNGVG 231

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGK++ +    G KV+LAAGDTFR+AA +QL+IWA R   + V  + GSD AA+ +
Sbjct: 232 KTTSIGKMAHRFKQDGKKVLLAAGDTFRAAASEQLEIWAQRVGVEVVKHQEGSDPAAVIF 291

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+KVDVLI DTAGRLHN   LM  +GK+ +V+ R    A   VL VLDATTGQ
Sbjct: 292 DAIQAAKARKVDVLICDTAGRLHNKKNLMNELGKVFKVVDREYGEATKEVLLVLDATTGQ 351

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA++Q + F  VA  TGLI+TK+DGTA+GG +I I     IPV  +GVGE + DL+ F A
Sbjct: 352 NAIQQAKTFKEVANITGLILTKLDGTAKGGVVIGISQELTIPVKLIGVGEKMEDLQQFNA 411

Query: 304 KDFSAVITG 312
            DF   + G
Sbjct: 412 TDFVKALFG 420


>gi|312115616|ref|YP_004013212.1| signal recognition particle protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220745|gb|ADP72113.1| signal recognition particle protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 504

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L D        E+   LI +D+ + V +   + +  K   
Sbjct: 2   FDSLSDRLSGIFDKLTRRGALTDSDVSEAMREVRRALIEADVALDVVKSFTDRVKEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V + + + L   ++P +   S  P  I++VG+ G GKTT   K+
Sbjct: 62  QEVVRSVTPGQMVVKIVHDELVRTLGAEAEPIDLQ-SVPPVPIMMVGLQGSGKTTTTAKI 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++++    KV++A+ DT R AA +QL++   +T  D +    G     +A  A + A+
Sbjct: 121 AKRLTERDKRKVLMASLDTRRPAAQEQLEVLGKQTGVDTLPIIKGQTPQQIATRAIQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRLH +  LM    ++       D   PH  L V D+ TGQ+A+    
Sbjct: 181 LGGYDVVILDTAGRLHIDDELMRETEQV------RDIAQPHETLLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  LG GE ++ LE F  +  +  I
Sbjct: 235 TFDQRIGITGIVLTRIDGDGRGGAALSMRAVTGKPIKLLGTGEKLDGLEDFHPERVAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|255658107|ref|ZP_05403516.1| signal recognition particle-docking protein FtsY [Mitsuokella
           multacida DSM 20544]
 gi|260849412|gb|EEX69419.1| signal recognition particle-docking protein FtsY [Mitsuokella
           multacida DSM 20544]
          Length = 304

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 133/304 (43%), Positives = 183/304 (60%), Gaps = 3/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L KG   T   L   I  II     +DD + +ELE+ LI +D+GV    K++  
Sbjct: 1   MGFFDRLKKGLNKTRENLTNKIEKIIIGYADIDDDLLDELEETLIMADVGVQTTDKLMTA 60

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +      K+++    L   + + I ++L              P V+LV+GVNG GKTT I
Sbjct: 61  VRKGIKKKEINTPENLKPFLQKQIVEILTAGEDTTRI-AEQGPTVLLVIGVNGAGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G  V+LAA DTFR+AAIDQL++W  RT    +  E GSD AA+A++A K 
Sbjct: 120 GKLAAYYKGQGKSVLLAAADTFRAAAIDQLEVWGQRTGVPVIKHEEGSDPAAVAFDAVKA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A A+KVD+LIIDTAGRL   S LM  + K+ RV+ R  P APH  L VLDATTGQNA+ Q
Sbjct: 180 AVARKVDMLIIDTAGRLQTKSNLMQELEKINRVIGREIPGAPHETLLVLDATTGQNAISQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E+F   A  TG+++TK+DGTA+GG +I I     +PV ++GVGEG+ DL PF A+DF+ 
Sbjct: 240 AELFTKAAPITGVVLTKLDGTAKGGVVIGIKSQLSMPVKWIGVGEGVEDLRPFNAEDFAK 299

Query: 309 VITG 312
            + G
Sbjct: 300 ALFG 303


>gi|16800983|ref|NP_471251.1| hypothetical protein lin1917 [Listeria innocua Clip11262]
 gi|16414418|emb|CAC97147.1| lin1917 [Listeria innocua Clip11262]
          Length = 328

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 189/312 (60%), Gaps = 10/312 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G  
Sbjct: 8   KDKITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFE 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVIL 115
              ++V+ L  +   +++S      DV E+I + L+ + +    +        +   VIL
Sbjct: 68  TVMELVDTLRREVQLRNISDP---KDVQEVIVEKLVDIYQGDEKEDETLHIEENGLTVIL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AIDQL++W +RT  D +    G
Sbjct: 125 FVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL 
Sbjct: 185 SDPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE +
Sbjct: 245 VLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQM 304

Query: 296 NDLEPFVAKDFS 307
           +DL+ F A ++ 
Sbjct: 305 DDLQAFDANEYV 316


>gi|119486598|ref|ZP_01620648.1| cell division protein [Lyngbya sp. PCC 8106]
 gi|119456215|gb|EAW37347.1| cell division protein [Lyngbya sp. PCC 8106]
          Length = 559

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/314 (33%), Positives = 184/314 (58%), Gaps = 5/314 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            + VA E ++W++KL +G   T   L   +  I+    L++   EE+E LL+++D+GV  
Sbjct: 244 PEDVALEEITWLQKLWRGLGRTRRNLLNQLKAIVGQGPLNEEAVEEIESLLLQADVGVEA 303

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM----PLSKPFNWDFSHRPHVILVVG 118
              ++  L  K   + +  ++ +  + +++ ++L         P         ++ L+ G
Sbjct: 304 TDTVIAALQEKIRTEILPPEQAIAYLKQILRELLDRPYQNGYSPLFAPQKDTLNIWLMTG 363

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNG GKTT IGK+    + +  + ++AA DTFR+AA++Q++IW +R+  D + +    +D
Sbjct: 364 VNGAGKTTTIGKIGHIATKSDYRCLIAAADTFRAAAVEQVRIWGERSGVDVIANPGKNTD 423

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A + A+++ +++L++DTAGRL N   LM  + K+ RV+++  P A    L VL
Sbjct: 424 PAAVVFDAMEAARSRNIELLLVDTAGRLQNKKNLMEELSKVRRVIEKKAPDAIVESLLVL 483

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DAT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + IV    +P+ F+GVGE I D
Sbjct: 484 DATLGQNGLRQAEVFAEAAQLSGVVLTKLDGTAKGGVALAIVQKLGLPIRFIGVGESIED 543

Query: 298 LEPFVAKDFSAVIT 311
           L PF + +F   + 
Sbjct: 544 LRPFSSYEFIEALL 557


>gi|117928770|ref|YP_873321.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidothermus
           cellulolyticus 11B]
 gi|117649233|gb|ABK53335.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidothermus
           cellulolyticus 11B]
          Length = 551

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/307 (25%), Positives = 144/307 (46%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L+     +    RL     D    E+   L+ +D+ + V +  +  +  +  +
Sbjct: 2   FEALADRLEAVFKTLRGKGRLSEADIDATLREIRLALLEADVALPVVRDFLSGVRERARS 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++S      Q+V+  V+E + ++L   ++   +   + P VIL+ G+ G GKTTV  KL
Sbjct: 62  AELSRALNPAQQVISIVNEELIRILGGQARRLRF-AKNPPSVILLAGLQGSGKTTVAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---GSDAAALAYEAFKQ 188
            + ++  G   +L A D  R  A++QL++   R        E      D   +A    + 
Sbjct: 121 GRWLAKQGHTPVLVAADLQRPNAVEQLQVLGARAEVPVFAPEPGSGVGDPVDVARRGVEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ +  D+++IDTAGRL  +  +      M + ++  D   P  +L V+DA  GQ+A+  
Sbjct: 181 ARRRLHDIVVIDTAGRLGVDEDM------MRQAMEIRDATEPDEILFVVDAMVGQDAVTT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+I+TK+DG ARGG  + +       + F   GE ++D + F  +  ++
Sbjct: 235 ARAFLDGVGFDGVILTKLDGDARGGAALSVASVTGKQILFASTGEKLDDFDVFHPERMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|219681411|ref|YP_002467796.1| cell division protein FtsY [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219681967|ref|YP_002468351.1| cell division protein FtsY [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471085|ref|ZP_05635084.1| cell division protein FtsY [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621700|gb|ACL29856.1| cell division protein FtsY [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624254|gb|ACL30409.1| cell division protein FtsY [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 378

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 186/309 (60%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K  +   ++  +L K   +T   L + I  I  S+++D+ + EELE+ ++ +DIG+   
Sbjct: 70  EKAQNTKNNFFLRLKKSLKTTKKNLGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTT 129

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +I+  L+     +D+     LY  +   +  +L  +  P     SH P VILVVGVNG 
Sbjct: 130 NRIISNLIKDVNREDLKNSEKLYFLLKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGT 188

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT + KL++K    G  +MLAA DTFR+A I+QL+      +   +    GSD AA+ 
Sbjct: 189 GKTTTVAKLAEKYKLEGKSIMLAAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVI 248

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K A++KK+DVLIIDTAGRLHN   L+  + K++RV+K++D  APH  L ++D+  G
Sbjct: 249 FDAVKSAKSKKIDVLIIDTAGRLHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNG 308

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN ++Q E+FH     TG+I+TK+DGTA+GG +  +    +IP+ ++G+GE + DL  F 
Sbjct: 309 QNTIQQTEIFHKALNLTGIIITKLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFN 368

Query: 303 AKDFSAVIT 311
           +++F   I 
Sbjct: 369 SQEFIESIF 377


>gi|167753500|ref|ZP_02425627.1| hypothetical protein ALIPUT_01774 [Alistipes putredinis DSM 17216]
 gi|167658125|gb|EDS02255.1| hypothetical protein ALIPUT_01774 [Alistipes putredinis DSM 17216]
          Length = 443

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + KL+     I    R+ +       +E+   LI +D+   VA+   +E+  K   
Sbjct: 2   FENLTDKLERSFKLIKGEGRITEINVAETLKEIRRALIDADVNYKVAKSFTDEVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q +   V + + +++   +     + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QDVLKSVKPGQMITKIVRDELAQLMGGTATDIKLEGT--PAVILIAGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +    G +V+L AGD +R AAIDQLK+   +   +    E   +   +A  A K A+
Sbjct: 120 AAMLKSKKGRQVLLVAGDVYRPAAIDQLKVLGGQIGVEVYTEEGNKNPVQIAENAIKYAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRL  +  +M  I  + + +K      P   L V+D+ TGQ+A+    
Sbjct: 180 QHGFNVVIVDTAGRLAVDEAMMQEITAIKQAVK------PGETLFVVDSMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  I I      P+ F+  GE ++ ++ F  +  +  I
Sbjct: 234 EFNQRLDFDGVVLTKLDGDTRGGAAISIRAVVNKPLKFISSGEKMDAIQVFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|257469323|ref|ZP_05633417.1| Signal recognition particle receptor FtsY [Fusobacterium ulcerans
           ATCC 49185]
          Length = 386

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 176/308 (57%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVA 63
           K   ES  +   L      +   L   +   I+    +D  + EELED+LI+SDIG+ + 
Sbjct: 78  KKEEESKGFFTSLKDKLFKSREGLFGKLKSFILGRSVIDFEMYEELEDILIQSDIGMDMT 137

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            KIV  L  +   + +   + +Y V + + +  +            + +VILVVGVNGVG
Sbjct: 138 VKIVGALEKEVKKRGIKDPKDIYPVLKEVMEGFLIKEGNDIVIEDGKLNVILVVGVNGVG 197

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K    G KV+L AGDTFR+AAI+QL+ WA R+ A+ V S  GSD  A+ +
Sbjct: 198 KTTTIGKLASKFVKDGKKVILGAGDTFRAAAIEQLEEWAKRSGAEIVKSTQGSDPGAVVF 257

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +    A+A+  D+ IIDTAGRLHN + LM  + K+  ++K+      +  + V+D TTGQ
Sbjct: 258 DTLAAAEARGADIAIIDTAGRLHNKNNLMKELEKIHNIIKKKLGDQHYESILVIDGTTGQ 317

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N L Q ++F+ V   TG I+TK+DGTA+GG +  I    K P+ F+GVGE I DL  F A
Sbjct: 318 NGLSQAKVFNEVTDLTGFIITKLDGTAKGGIVFSISEEIKKPIKFIGVGEKIEDLRKFDA 377

Query: 304 KDFSAVIT 311
           K++   I 
Sbjct: 378 KEYIQAIF 385


>gi|206900972|ref|YP_002251247.1| signal recognition particle protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740075|gb|ACI19133.1| signal recognition particle protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 436

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 147/306 (48%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L+E    +    +L +        E+   L+ +D    V ++++  +  K   
Sbjct: 2   FENLTSRLQEVFKKLRGKGKLTEKDIEEALREVRQALLEADAHYKVVKELLNNVKAKALQ 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       ++++  +   +  +L       N   S +P +ILVVG+ G GKTT   KL
Sbjct: 62  EDVLKSVTPAEQIIRILYYELLNILGGEKADLNLG-SKKPGIILVVGLQGSGKTTTCAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K++    +V+L   DTFR AA  QL+I A++                +   A + A+ 
Sbjct: 121 AYKLAQEQRRVLLVGADTFRPAAGKQLQILAEKIKVPVYVDG--KGPFEIIDGALEVAKE 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DV+I+DT GRLH +  +M  + ++ +         P  +L V+D  TGQ+A+   E 
Sbjct: 179 KLSDVMIVDTTGRLHIDEEMMNELNELNKRYN------PSEILLVVDGMTGQDAVNIAEK 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+I+TKMDG ARGG  + +      P+ F+GVGE I DLE F     ++ I 
Sbjct: 233 FNEKLPLTGVILTKMDGDARGGAALSVKAITGKPIKFIGVGEKIEDLEYFYPDRLASRIL 292

Query: 312 GCLDYG 317
           G  D  
Sbjct: 293 GMGDLA 298


>gi|225868197|ref|YP_002744145.1| cell division protein FtsY [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701473|emb|CAW98619.1| putative cell division protein FtsY [Streptococcus equi subsp.
           zooepidemicus]
          Length = 485

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 167/300 (55%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE+LLI SD+GV VA  + EEL  +
Sbjct: 182 EKYKRSLKKTRTGFSARLNSFFANFRRVDEDFFEDLEELLILSDVGVHVATTLTEELRYE 241

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+              +     V+L VGVNGVGKTT IGKL
Sbjct: 242 AKLENAKKPEALKRLIIEKLVAIYEGDGRYNEAIHYQQDLTVMLFVGVNGVGKTTSIGKL 301

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 302 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGVERAVA 361

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D+L+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 362 EKADILLIDTAGRLQNKDNLMAELEKIGRIIKRVIPDAPHETLLALDASTGQNALSQAKE 421

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV  +G GE I+D+  F ++DF   + 
Sbjct: 422 FSKITPLTGLILTKIDGTAKGGIVLAIRQELDIPVKLIGFGEAIDDIGEFHSEDFMKGLL 481


>gi|145588389|ref|YP_001154986.1| signal recognition particle protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046795|gb|ABP33422.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 460

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 151/307 (49%), Gaps = 18/307 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V + ++E++  K   
Sbjct: 2   LENLTDRLSRVVKTMRGQARLTEDNTAEMLREIRLALLEADVALPVVKSLLEQIKFKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHK-MLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIG 129
           ++V       Q ++  V   + + M+   ++    + +   P VIL+ G+ G GKTT +G
Sbjct: 62  EEVVGSLSPGQALVGVVQRELAQVMMGDTNQSGELNLATQPPAVILMAGLQGAGKTTSVG 121

Query: 130 KLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K + +   K +   + D +R AAI+QL+    +  A+F  S +      +A  A   
Sbjct: 122 KLAKWLQEKKKKKVLTVSCDVYRPAAIEQLETVTKQVGAEFFPSNVNQKPNDIATAALDW 181

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+I+DTAGRL  +  LM  I  +   L       P   L V+DA  GQ+A+  
Sbjct: 182 ARRHYFDVVIVDTAGRLGIDEALMQEIKTLHASLN------PIETLFVVDAMLGQDAVNT 235

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + FH     TG+I+TK+DG +RGG  + +     +P+ F+GV E ++ LE F A+  + 
Sbjct: 236 AKAFHEALPLTGVILTKLDGDSRGGAALSVRQVTGVPLKFIGVAEKMDGLEAFDAERMAN 295

Query: 309 VITGCLD 315
            I G  D
Sbjct: 296 RILGMGD 302


>gi|289427776|ref|ZP_06429487.1| signal recognition particle protein [Propionibacterium acnes J165]
 gi|289159040|gb|EFD07233.1| signal recognition particle protein [Propionibacterium acnes J165]
          Length = 528

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L      +    RL D   +    ++   L+ +D+ ++V ++ V  +  + + 
Sbjct: 2   FDTLQDRLASTFKGLRGKGRLTDADIDATTRQIRIALLEADVNLSVVKEFVAAIKERCHG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++S      Q+++  V+E + ++L   ++   +     P ++++ G+ G GKTT+ GKL
Sbjct: 62  EELSKALNPTQQIVKIVNEELVEILGGQTRTVRF-AKTPPTIVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++   + G   +LAA D  R  A+ QL++  +R        E G+   D   +A +A  +
Sbjct: 121 ARWFKEEGHSPLLAACDLQRPNAVTQLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+IIDTAGRL  ++ +MA    +           P   L V+DA  GQ+A+  
Sbjct: 181 AEHKLYDVVIIDTAGRLGVDAGMMAQAADIKTATD------PDETLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+++TK+DG ARGG  + I      P+ F   GEG+ D + F     ++
Sbjct: 235 AVAFQEGVGFDGVVLTKLDGDARGGAALSIARVVGKPIMFASSGEGLKDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|325922541|ref|ZP_08184301.1| signal recognition particle subunit FFH/SRP54 (srp54) [Xanthomonas
           gardneri ATCC 19865]
 gi|325546980|gb|EGD18074.1| signal recognition particle subunit FFH/SRP54 (srp54) [Xanthomonas
           gardneri ATCC 19865]
          Length = 458

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   +  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTMERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVLKSLTPGQALIKIVRDELTAVMGAAATDLNLNVPA-PAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QLK  A++    F  S+       +   A   A+
Sbjct: 121 AKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  ++ +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDAAMMDEIKALHAAVN------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+G GE  + L+ F     ++ I
Sbjct: 235 AFGEALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVFHPDRVASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|238650586|ref|YP_002916438.1| cell division protein [Rickettsia peacockii str. Rustic]
 gi|238624684|gb|ACR47390.1| cell division protein [Rickettsia peacockii str. Rustic]
          Length = 303

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 128/303 (42%), Positives = 187/303 (61%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD    EELE+LLI SD+ V V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVLVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L     PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAKLIEQQLSKSEIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AA++QL  WADR +   +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANVLLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+DA TGQN   QVE
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVIDAITGQNTYNQVE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  I
Sbjct: 241 HFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARNI 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|332521595|ref|ZP_08398048.1| signal recognition particle protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042684|gb|EGI78884.1| signal recognition particle protein [Lacinutrix algicola 5H-3-7-4]
          Length = 442

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL + +  +     + +       +E+   L+ +D+   +A+     +  K   
Sbjct: 2   FNNLSEKLDKALHVLKGHGSITEVNVAETLKEVRRALLDADVNFKIAKDFTNRVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++   ++  N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  ANVLTTLQPGQLMVKIVKDELTELMGGDAEGINL--SGTPTVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AA+DQL +  D+   D    +  +D  A+A      A+
Sbjct: 120 ANFLKSKKTKKPLLVACDVYRPAAVDQLHVVGDQIKVDVYSDKGNNDPVAIAQAGIAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRL  +  +M  I  +   +K      P   L V+D+ TGQ+A+   +
Sbjct: 180 QNGHNVVIIDTAGRLAVDEAMMTEISNIHTAIK------PQETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V    G+I+TK+DG  RGG  I I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 AFNDVLNFDGVILTKLDGDTRGGAAISIKSVVNKPIKFIGTGEKMEAIDIFYPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|285017743|ref|YP_003375454.1| signal recognition particle (srp) component with 45s rna (ffs)
           protein [Xanthomonas albilineans GPE PC73]
 gi|283472961|emb|CBA15466.1| probable signal recognition particle (srp) component with 4.5s rna
           (ffs) protein [Xanthomonas albilineans]
          Length = 458

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   +  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTMQRLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELTAVMGSAASDLNLNVPA-PAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QLK  A++    F  SE       +   A   A+
Sbjct: 121 AKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSESSQQPVDIVRAAIADAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  +  +MA I  +   +           L V+DA TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDEAMMAEIKALHAAITPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+GVGE  + L+ F     ++ I
Sbjct: 235 AFSDALPLTGVVLTKTDGDARGGAALSVRYITGRPIKFIGVGEKPDGLDVFHPDRLASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|224370185|ref|YP_002604349.1| Ffh [Desulfobacterium autotrophicum HRM2]
 gi|223692902|gb|ACN16185.1| Ffh [Desulfobacterium autotrophicum HRM2]
          Length = 441

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +   +E    +   L+ +D+   VA+K++ ++  +   
Sbjct: 2   FDNLSDRLNATFKKLKGRGTLSEKAIDEGLKQVRMALLEADVNYRVAKKVISDIHRRALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V +    M+    +  N   +  P  +++VG+ G GKTT  GKL
Sbjct: 62  QEVMESLTPGQQVIKIVYDEFSTMMGSAHEGLNLG-NRVPETVMLVGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G +  L   D  R AAIDQLK    +       S        +   A K A  
Sbjct: 121 ALYLKKQGKRPFLVPVDLHRPAAIDQLKKLGKQLGIPVFDSTQEMKLGDICRAAEKMAGQ 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D L++DTAGRLH +  LMA + ++ ++L       P   L V DA TGQ+A+     
Sbjct: 181 EGFDTLLVDTAGRLHVDDGLMAELVELKKMLN------PVETLLVADAMTGQDAVNIAGA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TKMDG ARGG  + I      P+ F+GVGE    LEPF  +  ++ I 
Sbjct: 235 FDKAVDLTGVILTKMDGDARGGAALSIKAVTGKPLKFIGVGEKSTGLEPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|314984434|gb|EFT28526.1| signal recognition particle protein [Propionibacterium acnes
           HL005PA1]
          Length = 528

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L      +    RL D   +    ++   L+ +D+ ++V ++ V  +  + + 
Sbjct: 2   FDTLQDRLASTFKGLRGKGRLTDADIDATTRQIRIALLEADVNLSVVKEFVAAIKERCHG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++S      Q+++  V+E + ++L   ++   +     P ++++ G+ G GKTT+ GKL
Sbjct: 62  EELSKALNPTQQIVKIVNEELVEILGGQTRTVRF-AKTPPTIVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++   + G   +LAA D  R  A+ QL++  +R        E G+   D   +A +A  +
Sbjct: 121 ARWFKEEGHSPLLAACDLQRPNAVTQLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+IIDTAGRL  ++ +MA    +           P   L V+DA  GQ+A+  
Sbjct: 181 AEHKLYDVVIIDTAGRLGVDAEMMAQAADIKTATD------PDETLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+++TK+DG ARGG  + +      P+ F   GEG+ D + F     ++
Sbjct: 235 AVAFQEGVGFDGVVLTKLDGDARGGAALSLARVVGKPIMFASSGEGLKDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|328952468|ref|YP_004369802.1| signal recognition particle protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328452792|gb|AEB08621.1| signal recognition particle protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 445

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL +    +    +L +        E+   L+ +D+   VA+  ++ +  +   
Sbjct: 2   FDRLSDKLGKVFKKLKGHGKLTEANIQEALREVRLALLEADVHYKVAKTFIDRIRERALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + +  +L   +          P  +++VG+ G GKTT   KL
Sbjct: 62  QEVMTSLTPGQQVVKIVHDELAALLGGEAPRLELG-GKTPVALMLVGLQGSGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +LA  DT R AAI+QL         D   S+   +  ALA EA   A A
Sbjct: 121 ALYLKKQGRQPLLAPVDTQRPAAIEQLHRLGAEIGVDVYRSQPQQNPVALASEAMAAAVA 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DVL++DTAGRLH ++ LMA +  +   +          +L V DA TGQ+A+   + 
Sbjct: 181 KGHDVLLLDTAGRLHVDAPLMAELQAIKADVGPA------EILLVADAMTGQDAVAVAQN 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     TG+I+TK++G ARGG  + +      P+ FLGVGE ++ LE F     ++ I 
Sbjct: 235 FHEALDLTGVILTKVEGDARGGAALSMRTVVNKPIKFLGVGEKLDALEVFHPDRLASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|118581717|ref|YP_902967.1| signal recognition particle-docking protein FtsY [Pelobacter
           propionicus DSM 2379]
 gi|118504427|gb|ABL00910.1| signal recognition particle-docking protein FtsY [Pelobacter
           propionicus DSM 2379]
          Length = 381

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 116/302 (38%), Positives = 181/302 (59%), Gaps = 3/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  +L +G   T   L   I  + +  + +D    EELE++LI SD+GV    +++  L
Sbjct: 79  GFFERLKQGLQKTKEGLVGRIDALVLGKKEIDADTLEELEEILITSDVGVKTTVELIRTL 138

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +    ++   + L + + E I   L       +   S RP V+LV+GVNGVGKTT IG
Sbjct: 139 EQRLGRNELKDGQALKNALKEEILLRLNAHHGQLDIG-SRRPFVLLVIGVNGVGKTTTIG 197

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ + + +G  V+LAA DTFR+AA +QL +W +R+  + +  + G+D +A+ ++A K A
Sbjct: 198 KLASRFTGSGKTVLLAAADTFRAAAAEQLVVWGERSGVEVIRHKEGADPSAVVFDACKAA 257

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+ VD+LI+DTAGR+H    LM  + K+ RV+ R  P APH  L V+DA TGQNA+ Q 
Sbjct: 258 VARDVDILIVDTAGRMHTKVNLMEEMKKIRRVIDREIPGAPHETLLVVDAATGQNAVSQA 317

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F   AG TG+ +TK+DGTA+GG ++ +     +PV ++GVGE I+DL  F  ++F+  
Sbjct: 318 RLFKEAAGVTGIALTKLDGTAKGGVVVAVSHEFALPVRYIGVGEAIDDLRDFSPQEFTDA 377

Query: 310 IT 311
           + 
Sbjct: 378 LF 379


>gi|87244956|gb|ABD34788.1| secA-dependent peptide secretory protein [Rickettsia raoultii]
 gi|88595847|gb|ABD43172.1| FtsY [Rickettsia raoultii]
          Length = 303

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 188/303 (62%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD    EELE+LLI SD+ V+V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVSVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L     PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAKLIEQQLSKSEIPFTLS-KNKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV + A DTFR+AA++QL  WADR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKVAVTACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+DA TGQN   QVE
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVIDAITGQNTYNQVE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  +
Sbjct: 241 HFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNRHDFARNL 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|15616653|ref|NP_239865.1| cell division protein FtsY [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386779|sp|P57137|FTSY_BUCAI RecName: Full=Cell division protein ftsY homolog
 gi|25535939|pir||G84932 cell division protein ftsY [imported] - Buchnera sp. (strain APS)
 gi|10038716|dbj|BAB12751.1| cell division protein ftsY [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 378

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 186/309 (60%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K  +   ++  +L K   +T   L + I  I  S+++D+ + EELE+ ++ +DIG+   
Sbjct: 70  EKAQNTKNNFFLRLKKSLKTTKKNLGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTT 129

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +I+  L+     +D+     LY  +   +  +L  +  P     SH P VILVVGVNG 
Sbjct: 130 NRIISNLIKDVNREDLKNSEKLYFLLKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGT 188

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT + KL++K    G  +MLAA DTFR+A I+QL+      +   +    GSD AA+ 
Sbjct: 189 GKTTTVAKLAEKYKLEGKSIMLAAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVI 248

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K A++KK+DVLIIDTAGRLHN   L+  + K++RV+K++D  APH  L ++D+  G
Sbjct: 249 FDAVKSAKSKKIDVLIIDTAGRLHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNG 308

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN ++Q E+FH     TG+I+TK+DGTA+GG +  +    +IP+ ++G+GE + DL  F 
Sbjct: 309 QNTIQQTEIFHKALNLTGIIITKLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFN 368

Query: 303 AKDFSAVIT 311
           +++F   I 
Sbjct: 369 SQEFIESIF 377


>gi|110639137|ref|YP_679346.1| signal recognition particle subunit FFH/SRP54 [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110281818|gb|ABG60004.1| signal recognition particle subunit FFH/SRP54 (srp54) [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 443

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 145/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL +    +    R+ +       +E+   LI +D+   VA+ + +++      
Sbjct: 2   FDNLSQKLDKAFKTLKGQGRITEINVATTAKEIRKALIDADVNYKVAKSVTDDIKEIALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++    E + K++    +  +      P VIL+ G+ G GKTT  GKL
Sbjct: 62  REVLISVSPGQLLVKITHEELTKLMGGEKQEISLKGD--PSVILIAGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +      V+L A D +R AAIDQLK+  ++   +            ++  A + A+ 
Sbjct: 120 AAYIKKQNRNVLLVACDVYRPAAIDQLKVLGEQVGVEVYTEPDNKKPVEISKNAIEYAKK 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
               V+IIDTAGRL  +  +M  I ++ + ++      P   L V+D+ TGQ+A+   + 
Sbjct: 180 NNKKVVIIDTAGRLAIDEQMMNEIAEVKKAIQ------PSETLFVVDSMTGQDAVNTAKA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG  RGG  I I    + P+ F+  GE ++ L+ F  +  ++ I 
Sbjct: 234 FNDRINFDGVVLTKLDGDTRGGAAISIRAVVEKPIKFISTGEKMDALDVFYPERMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|227553504|ref|ZP_03983553.1| signal recognition particle protein [Enterococcus faecalis HH22]
 gi|227177374|gb|EEI58346.1| signal recognition particle protein [Enterococcus faecalis HH22]
          Length = 442

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 138/278 (49%), Gaps = 13/278 (4%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPL 99
           +  E+   L+ +D+ + V +   + +  +    +V       Q+++  V E + K L   
Sbjct: 1   MMREIRLALLEADVNLQVVKDFTKRVRERAVGVEVLESLSPAQQIVKIVDEELTKTLGSE 60

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQL 158
           +   N      P VI++ G+ G GKTT  GKL+K +      + +L AGD +R AAIDQL
Sbjct: 61  TVELNKS-PKIPTVIMMTGLQGAGKTTFTGKLAKHLMKTENARPLLIAGDVYRPAAIDQL 119

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K+   +           ++   +  +    A+ KK D ++IDTAGRLH +  LM  + ++
Sbjct: 120 KVLGQQLEVPVFDMGTDANPVEIVRQGLALAKEKKNDYVLIDTAGRLHIDEALMDELKQI 179

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
             +        P+ +L V+DA TGQ+A+   + F+   G TG+++TKMDG  RGG  + I
Sbjct: 180 KEL------ADPNEILLVVDAMTGQDAVNVADSFNEQLGITGVVITKMDGDTRGGAALSI 233

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
                 P+ F+G GE + DLE F     S+ I G  D 
Sbjct: 234 RAVTGAPIKFVGSGEKLTDLEIFHPDRMSSRILGMGDM 271


>gi|95929906|ref|ZP_01312647.1| signal recognition particle-docking protein FtsY [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134202|gb|EAT15860.1| signal recognition particle-docking protein FtsY [Desulfuromonas
           acetoxidans DSM 684]
          Length = 429

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 183/309 (59%), Gaps = 3/309 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           +   E +S   ++  G + TS  L   I  + +    ++  V EELE++LI +D G+   
Sbjct: 119 EAPPEPVSLYDRMRSGLSKTSSALIGRIDSLFTGASTVNQDVIEELEEILITADFGMKTT 178

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           Q +V+    +      +    L D+  + I ++L   ++P   D  H P V++V+GVNGV
Sbjct: 179 QMLVDGFQQRAKELKETDADQLRDLLKDEIRRLLDVNAEPLALD-RHSPFVLMVIGVNGV 237

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++ S  G KV+L A DTFR+AA DQL++W +R+    +  + G+D AA+A
Sbjct: 238 GKTTTIGKLAQQFSSQGKKVVLGAADTFRAAAADQLEVWGERSGVKVIRHDEGADPAAVA 297

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K A A+  D+LI+DTAGRLH    LM  + K+ RVL R    APH  L VLDATTG
Sbjct: 298 FDAAKAAVARNADILILDTAGRLHTKVNLMEEMKKLYRVLGREIGDAPHETLLVLDATTG 357

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q  +F    G TG+ +TK+DGTA+GG  + I     +PV F+GVGEGI DL PF 
Sbjct: 358 QNALVQARLFKEAVGVTGIALTKLDGTAKGGMAVAIGAELGLPVRFVGVGEGIEDLRPFD 417

Query: 303 AKDFSAVIT 311
            + F   + 
Sbjct: 418 PQMFVDALF 426


>gi|325281983|ref|YP_004254525.1| signal recognition particle protein [Odoribacter splanchnicus DSM
           20712]
 gi|324313792|gb|ADY34345.1| signal recognition particle protein [Odoribacter splanchnicus DSM
           20712]
          Length = 441

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +E+   L+ +D+   +A+     +  K   
Sbjct: 2   FENLSERLERSFKILKGQGKITELNVAETLKEVRRSLLDADVNYKIAKDFTNRVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++    K    D    P +IL+ G+ G GKTT  GK 
Sbjct: 62  MNVLTAVKPGQMMVKIVHDELAELMGG--KNVEVDIKGNPAIILMSGLQGSGKTTFSGKF 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +   K  L  A D +R AAI+QLK+  ++        E   D   +A +A KQA+
Sbjct: 120 ANLLKNKKGKKPLLVACDVYRPAAIEQLKVLGEQIQVPVYSDETTKDPVRIALDAIKQAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I  +   +       P+  L V+DA TGQ+A+    
Sbjct: 180 AKGYDVVIVDTAGRLAIDEQMMNEIAAIKEAIH------PNETLFVVDAMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+I+TK+DG  RGG  + I      P+ ++G GE +  L+ F  +  +  I
Sbjct: 234 EFNERLDFNGVILTKLDGDTRGGAALSIRTVVNKPIKYVGTGEKLEALDAFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|146337525|ref|YP_001202573.1| signal recognition particle protein [Bradyrhizobium sp. ORS278]
 gi|146190331|emb|CAL74327.1| 4.5S-RNP protein, GTP-binding export factor, part of signal
           recognition particle with 4.5 RNA, ffh family (fifty
           four homolog) [Bradyrhizobium sp. ORS278]
          Length = 515

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 136/305 (44%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +     L +   +    E+   L+ +D+ + V +   + +  +   
Sbjct: 2   FDNLSERLGGILDRLTGRGSLSEADVDAAMREVRRALLEADVALEVVRSFTDRVREQAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + + K L    +  + +    P  I++VG+ G GKTT   KL
Sbjct: 62  ATVVKSVTPGQMVVKIVHDELVKTLGDDGQTIDLNAV-PPVPIMMVGLQGSGKTTTTAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++M      KV++A+ D +R AA++QL +         +    G     +A  A + A+
Sbjct: 121 ARRMVQRDKRKVLMASLDVYRPAAMEQLAVLGRDLDIPTLPIVAGQMPPQIARRAIEAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  +M    ++  V        PH VL V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRTTLDEDMMKEAAEIKAVAN------PHEVLLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+ +T++DG  RGG  + +      P+  LG GE  + LE F     +  I
Sbjct: 235 SFDQRVGLTGIALTRIDGDGRGGAALSMRAVTGKPIKLLGTGEKTDALEDFYPSRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|255693888|ref|ZP_05417563.1| signal recognition particle-docking protein FtsY [Bacteroides
           finegoldii DSM 17565]
 gi|260620293|gb|EEX43164.1| signal recognition particle-docking protein FtsY [Bacteroides
           finegoldii DSM 17565]
          Length = 280

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 114/276 (41%), Positives = 168/276 (60%), Gaps = 5/276 (1%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLS 100
           DD V + LE++LI SD+GV     I++ +  +    K V+ Q + + + + I  +L   +
Sbjct: 2   DDEVLDNLEEVLITSDVGVETTLNIIKRIEKRAAEDKYVNTQELNHILRDEIAALLTENN 61

Query: 101 KP----FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
                 F+     +P+VI+VVGVNGVGKTT IGKL+ +   AG  V L A DTFR+AA++
Sbjct: 62  SGDIADFDVAIDKKPYVIMVVGVNGVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVE 121

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL IW +R     +  ++G+D A++AY+    A A   D++IIDTAGRLHN   LM  + 
Sbjct: 122 QLMIWGERVGVPVIKQKMGADPASVAYDTLSSAVANNADIVIIDTAGRLHNKVGLMNELT 181

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+  V++++ P AP+ VL VLD +TGQNA  Q + F      T + +TK+DGTA+GG +I
Sbjct: 182 KIKNVMRKVVPDAPNEVLLVLDGSTGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVI 241

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            I    KIPV ++G+GEGI DL+ F   +F   + G
Sbjct: 242 GISDQFKIPVKYIGLGEGIEDLQVFRKNEFVDSLFG 277


>gi|87244958|gb|ABD34789.1| secA-dependent peptide secretory protein [Rickettsia raoultii]
 gi|88595845|gb|ABD43171.1| FtsY [Rickettsia raoultii]
          Length = 303

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 188/303 (62%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD    EELE+LLI SD+ V+V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEELEELLISSDMSVSVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L     PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKAALAKLIEQQLSKSEIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV + A DTFR+AA++QL  WADR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKVAVTACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+DA TGQN   QVE
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVIDAITGQNTYNQVE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  +
Sbjct: 241 HFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNRHDFARNL 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|317968465|ref|ZP_07969855.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           CB0205]
          Length = 488

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 174/312 (55%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            ++ E + W+ +L +G   T       + D +    L   V ++LE LL+R+D+GV    
Sbjct: 175 DISLEEIDWLGRLRRGMEKTRQGFVTQLLDTLGDDPLTPEVLDDLESLLLRADVGVQATD 234

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVN 120
           +++E L  +   + V  +  +  + + +  +L    K            R +V L+VGVN
Sbjct: 235 QVLEALRKRLNEEVVEPEEGIRFLKDQLKGLLDQPIKASGTALLAPERGRLNVWLMVGVN 294

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           GVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W +R+    V +    +D A
Sbjct: 295 GVGKTTTLGKLANLAIRSGYSCLIAAADTFRAAAVQQVQVWGERSGVTVVSNPSANADPA 354

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+A   AQAK  D++++DTAGRL     LM  + K+ R++ +L P A    L VLDA
Sbjct: 355 AVVYDAIGAAQAKGTDLVLVDTAGRLQTKHNLMEELTKVRRIVDKLAPDAEVQSLLVLDA 414

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN L+Q   F   AG TG+++TK+DG++RGG  + +     +P+ F+G GEGI DL 
Sbjct: 415 SQGQNGLKQAMAFAQAAGLTGVVLTKLDGSSRGGVALAVSSEAGLPIRFIGAGEGIRDLR 474

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 475 PFNSFEFVEALL 486


>gi|222150100|ref|YP_002551057.1| signal recognition particle protein [Agrobacterium vitis S4]
 gi|221737082|gb|ACM38045.1| signal recognition particle protein [Agrobacterium vitis S4]
          Length = 526

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   L+ +D+ + V +   +++  K   
Sbjct: 2   FENLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALEVVRSFTDKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + +  ML       +   +  P VI++VG+ G GKTT  GK+
Sbjct: 62  AAVLKAIKPGQMVVKIVHDELVDMLGAEGVSIDL-HAPAPVVIMMVGLQGSGKTTTTGKI 120

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+++D    KV++A+ DT R AA +QL+    +T  D +   +G     +A  A + A+
Sbjct: 121 AKRLTDRDRKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIVGQSPTDIASRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +  K      PH +L V DA TGQ+A+    
Sbjct: 181 LGGHDVVILDTAGRTHIDEPLMVEMADIKKNAK------PHEILLVADALTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +GVGE + +L+ F  +  +  I
Sbjct: 235 NFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMTELDEFHPRRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|229815430|ref|ZP_04445762.1| hypothetical protein COLINT_02478 [Collinsella intestinalis DSM
           13280]
 gi|229808963|gb|EEP44733.1| hypothetical protein COLINT_02478 [Collinsella intestinalis DSM
           13280]
          Length = 493

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 138/306 (45%), Gaps = 17/306 (5%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F S S +L +    +    +L +        E+   L+ +D+   V +  V     + 
Sbjct: 2   AAFGSLSDRLNDTFDRLRGKGKLTEADINAAMREIRMALLEADVNYRVVKDFVTRTKERC 61

Query: 75  YAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            A +V       Q V+  V + + ++L           S  P+VI++VG+ G GKTT   
Sbjct: 62  LASEVMESLTPAQNVVKIVLDELTELLGGTESKLVLS-SRIPNVIMLVGLQGSGKTTAAV 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+  +   G   +LAA D +R AA DQL              + G+    +A  + ++A
Sbjct: 121 KLAYMLKKQGKSPLLAACDVYRPAAADQLATLGGEIGVPVFRGD-GAHPVDIARASIREA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV+I+DTAGRL  +  +M     + + +K      P  VL V+DA TGQ+ +  V
Sbjct: 180 VDNMRDVVIVDTAGRLQIDEQMMQEAVDIKKAVK------PDQVLMVVDAMTGQDIVNVV 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F       G+I++K+DG ARGGG + +      P+ F+ +GE  + LE F  +  +  
Sbjct: 234 STFAERTDFDGVIISKLDGDARGGGALSVREVTGKPIKFVSMGEKPDSLEVFNPERMAKR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|42520719|ref|NP_966634.1| cell division ABC transporter, periplasmic substrate-binding
           protein FtsY [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410459|gb|AAS14568.1| cell division ABC transporter, periplasmic substrate-binding
           protein FtsY [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 303

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 133/304 (43%), Positives = 191/304 (62%), Gaps = 3/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S    L +G   TS +  +G+  I S  ++LD  + +ELE+LLI  DIG   ++ I++ 
Sbjct: 1   MSLFSNLYQGLLKTSSRFSDGVKSIFSGKKKLDQSLLDELEELLISMDIGHKTSKLIIDR 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + ++ K+V    +   +   I  +L P  +P   +   +PH+I+V GVNG GKTT IG
Sbjct: 61  LTSIKFDKEVEYNTITQQLMSEIESILNPAVQPLILN--KKPHIIMVCGVNGNGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K  + G  VML A DTFR+AA +QL IWA+R+    V  E GSD+A++AY A  QA
Sbjct: 119 KLAYKYKEMGKSVMLVACDTFRAAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
               VDV++IDTAGRL NN  LM  + K+ R +K+LD  APH V+ VLDATTGQNA  Q+
Sbjct: 179 IKDNVDVVLIDTAGRLQNNVNLMEELSKIYRTIKKLDDTAPHDVILVLDATTGQNAYSQL 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F  +   TGLI+TK+DGTA+GG +I +   +KI ++ +G+GE I DL  F +K+F+  
Sbjct: 239 EAFSKMVNVTGLIVTKLDGTAKGGVVIGLAEAYKIKLHAIGIGENIEDLREFTSKEFAEA 298

Query: 310 ITGC 313
           +  C
Sbjct: 299 LFNC 302


>gi|327538567|gb|EGF25229.1| signal recognition particle-docking protein FtsY [Rhodopirellula
           baltica WH47]
          Length = 337

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 122/312 (39%), Positives = 174/312 (55%), Gaps = 3/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIG 59
           S       S     K+  G   T   L   I D+     R +D+    EL   LIR+D+G
Sbjct: 25  SPATDEEASGGLFGKMKTGLQKTRRVLGTDIRDLFKAEGRLVDEDFLGELYARLIRTDMG 84

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              A +I + +      + V ++ V+  ++E I + L              P VILVVGV
Sbjct: 85  AGPAGRIRDRVAKDYRGRVVQLEEVVQTITEDIREQLKQDHGDL-AKADSPPTVILVVGV 143

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKLS  +   G K++L AGDTFR+AA++QL IW++R   + V    G D A
Sbjct: 144 NGSGKTTSIGKLSHHLVSQGHKIVLGAGDTFRAAAVEQLTIWSERIGCEIVTGPSGVDPA 203

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++AY+  ++A     D  IIDTAGRL     LM  + K+ RV+ +  P APH VL VLDA
Sbjct: 204 SVAYQTTEKAIEIGADYAIIDTAGRLQTQGKLMQELEKIRRVIDKKLPGAPHEVLLVLDA 263

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           T GQNA+ Q + F + AG TG+I++K+DG+A+GG ++PI    ++PV F+G+GEGI D+ 
Sbjct: 264 TAGQNAISQAKGFSSAAGCTGIILSKLDGSAKGGVVLPIREQFELPVKFVGLGEGIEDMT 323

Query: 300 PFVAKDFSAVIT 311
            F    F+A + 
Sbjct: 324 KFDPDTFAAALL 335


>gi|167756880|ref|ZP_02429007.1| hypothetical protein CLORAM_02429 [Clostridium ramosum DSM 1402]
 gi|237734590|ref|ZP_04565071.1| signal recognition particle-docking protein ftsY [Mollicutes
           bacterium D7]
 gi|167703055|gb|EDS17634.1| hypothetical protein CLORAM_02429 [Clostridium ramosum DSM 1402]
 gi|229382410|gb|EEO32501.1| signal recognition particle-docking protein ftsY [Coprobacillus sp.
           D7]
          Length = 327

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 185/313 (59%), Gaps = 11/313 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K   +S     K   G   ++    + I ++ +  R ++D   EELE++LI SD+GV+
Sbjct: 8   KEKFVGKSAKQNEKYVAGLDRSNSTFSDRINELAARFREINDEYFEELENILIMSDVGVS 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML------MPLSKPFNWDFSHRPHVIL 115
           +  KIVEE+  +   ++++      +++E+I   +        +             VIL
Sbjct: 68  MVMKIVEEIKNEVRLQNITDP---KEINEIIVDKMFVIYANDSVMTTKINYAEEGLTVIL 124

Query: 116 VVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +VGVNG GKTT IGKL+ ++ +D G KVM+AAGDTFR+ AIDQL +WA R   D V  + 
Sbjct: 125 MVGVNGAGKTTTIGKLANRIVNDEGKKVMVAAGDTFRAGAIDQLAVWAQRVGVDIVKGKE 184

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G D +A+ ++A KQA+ K VDVLI DTAGRL N   LM  + KM R++KR  P APH  L
Sbjct: 185 GGDPSAVVFDALKQAKEKNVDVLICDTAGRLQNKVNLMNELEKMNRIIKREVPDAPHETL 244

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DATTGQN + Q   F  +   +GL++TKMDGTA+GG ++ I     IPV F+G+GE 
Sbjct: 245 LVIDATTGQNGVSQAVEFSKITDVSGLVLTKMDGTAKGGIVLSIKDQLNIPVKFIGLGES 304

Query: 295 INDLEPFVAKDFS 307
           ++DL+ F    + 
Sbjct: 305 VDDLQEFDLDQYI 317


>gi|166363209|ref|YP_001655482.1| cell division protein [Microcystis aeruginosa NIES-843]
 gi|166085582|dbj|BAG00290.1| cell division protein [Microcystis aeruginosa NIES-843]
          Length = 451

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 108/313 (34%), Positives = 184/313 (58%), Gaps = 5/313 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + V+ E ++W++KL +G   T   L   +  ++    L+    EE+E LL+++D+GV   
Sbjct: 136 EDVSEEEITWLKKLRQGLGKTRRSLVNQLKAVVGQGPLNQDAVEEIEALLLQADVGVDAT 195

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGV 119
             I+  L  K   + +  ++ +  + E+I ++L       S P       + ++ ++ GV
Sbjct: 196 DYIITTLQNKLKQEALPPEKAIEYLKEIIREILDAPLANYSNPGFEPEKGKLNIWMLTGV 255

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NGVGKTT IGKL+     +G   M+AA DTFR+AA++Q+K+W +R+  + + +    +D 
Sbjct: 256 NGVGKTTTIGKLAHLSKQSGYSCMIAAADTFRAAAVEQVKVWGERSQVEVIANPGKNTDP 315

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+  + A+++++++L++DTAGRL N   LMA + K+ R++ +    A    L VLD
Sbjct: 316 AAVVYDGIEAAKSREIELLLVDTAGRLQNKKNLMAELSKIRRIIDKKAESAVVESLLVLD 375

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN LRQ E+F   A  +G+I+TK+DGTA+GG  + +     +P+ F+G GEGI DL
Sbjct: 376 ATLGQNGLRQAEVFSEAAQLSGVILTKIDGTAKGGVALAVARQLNLPIRFVGAGEGIEDL 435

Query: 299 EPFVAKDFSAVIT 311
            PF + +F   + 
Sbjct: 436 RPFSSYEFVEALL 448


>gi|123969017|ref|YP_001009875.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. AS9601]
 gi|123199127|gb|ABM70768.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. AS9601]
          Length = 498

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++ +       +E++  L+ +D+ ++V ++ + ++  K   
Sbjct: 2   FDELSSRFEDAVKGLRGEAKISENNINDALKEVKRALLDADVSLSVVKEFISDVKDKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V++ +  ++   + P N +    P VIL+ G+ G GKTT  GKL
Sbjct: 62  EEVVRGVNPGQKFIEVVNKELINIMGNENSPLNEN-EKSPTVILMAGLQGAGKTTATGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQ 190
              + +   KV+L A D +R AA++QLK    +   +     E  S    +A EA   A 
Sbjct: 121 GLYLKEKDKKVLLVAADIYRPAAVEQLKTLGSQYELEVFSAKEKNSKPEEIAKEALNFAN 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               + +IIDTAGRL  +  +M+ + ++  V        P  +L V+D+  GQ A    +
Sbjct: 181 ENDFNSIIIDTAGRLQIDDSMMSEMVRIKEVSN------PDEILLVVDSMIGQEAADLTK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G TG I+TK+DG +RGG  + I      P+ F+GVGE I  L+PF  +  ++ I
Sbjct: 235 SFHEKVGITGAILTKLDGDSRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|193222405|emb|CAL62893.2| Signal recognition particle protein (Fifty-four homolog)
           [Herminiimonas arsenicoxydans]
          Length = 455

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 143/308 (46%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L + +  +    RL +     +  E+   L+ +D+ +   ++ +  +  K   
Sbjct: 2   LDNLTQRLAKAVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIGRVKEKAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           +DV       Q ++  V   +  ++     P     +     P +IL+ G+ G GKTT +
Sbjct: 62  EDVIGALSPGQALVGVVQRELAAIMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +   K +   + D +R AAI QLK   ++  ADF  SEI      +A  A  
Sbjct: 122 GKLAKYLREQKKKKVLTVSADVYRPAAIGQLKTVTEQVGADFFPSEITDKPVDIALAALD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLIIDTAGRL  +  +M  I  +   +K      P   L V+DA  GQ+A+ 
Sbjct: 182 YAKRHYHDVLIIDTAGRLGIDEAMMQEISAIHAAVK------PIETLFVVDAMLGQDAIN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+++TK+DG +RGG  + +      P+ F GV E ++ LE F     +
Sbjct: 236 TAKAFSDALPLTGIVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPVRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 DRILGMGD 303


>gi|254304380|ref|ZP_04971738.1| IISP Type II signal recognition particle GTPase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324572|gb|EDK89822.1| IISP Type II signal recognition particle GTPase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 444

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + ++    I    +L +        E++  L+ +D+   V +    ++  K   
Sbjct: 2   LENLGNRFQDIFKKIRGHGKLSESNIKDALREVKMSLLEADVNYKVVKDFTNKISEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V++ + ++L   S        + P +I++ G+ G GKTT   KL
Sbjct: 62  TEVIRGVNPAQQFIKLVNDELVELLGGTSSKLTKGLRN-PTIIMLAGLQGAGKTTFAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K++L   D +R AAI QL++   +   D    E   D   +A  A ++A+ 
Sbjct: 121 AKFLKKQNEKLLLVGVDVYRPAAIKQLEVLGQQIGVDVYSEEDNKDVVGIATRAIEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +I+DTAGRLH +  LM  + ++ + +K      P  +L V+DA  GQ+A+   E 
Sbjct: 181 INATYMIVDTAGRLHVDETLMEELKELKKAIK------PQEILLVVDAMIGQDAVNLAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+I+TK+DG  RGG  + I      P+ F+GVGE +ND+E F      + I 
Sbjct: 235 FNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKFIGVGEKLNDIEIFHPDRLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|302670931|ref|YP_003830891.1| signal recognition particle-docking protein FtsY [Butyrivibrio
           proteoclasticus B316]
 gi|302395404|gb|ADL34309.1| signal recognition particle-docking protein FtsY [Butyrivibrio
           proteoclasticus B316]
          Length = 304

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 119/302 (39%), Positives = 177/302 (58%), Gaps = 4/302 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  KL +G + T   + +GI ++ S    +DD   EELE+ LI  DIG+    KI++EL
Sbjct: 4   GFFSKLQQGLSKTRDSIAKGIDNVFSGYSNIDDDFYEELEETLIMGDIGINATSKIMDEL 63

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIG 129
            ++   + +   +    +  LI  +   +    N +DF  +  VI V+GVNGVGKTT +G
Sbjct: 64  RSQVKDRHIKDPQECKQL--LIEDIRNQMHTDENAYDFEDKKTVIFVIGVNGVGKTTSVG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+      G KV++AA DT+R+AA +QL+ WADR     V    G+D A++ Y+A    
Sbjct: 122 KLASIYKKKGKKVLIAAADTYRAAATEQLQSWADRAGTPIVSGREGADPASVIYDAVGAF 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+LI+DTAGRLHN   LM  + KM R++ +   +       VLD TTGQNAL Q 
Sbjct: 182 KARDIDILIVDTAGRLHNKKNLMEELAKMNRIIDKELGNVCRENFIVLDGTTGQNALNQA 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F   A  TG+++TK+DGTA+GG  + IV    IPV ++GVGEG++DLE F + +F   
Sbjct: 242 REFGEAAQLTGIVLTKLDGTAKGGIAVAIVSELNIPVKYIGVGEGLDDLERFNSDEFVDA 301

Query: 310 IT 311
           + 
Sbjct: 302 LF 303


>gi|71906282|ref|YP_283869.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Dechloromonas aromatica RCB]
 gi|71845903|gb|AAZ45399.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Dechloromonas aromatica RCB]
          Length = 455

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 154/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +        E+   L+ +D+ + V +  +  +  K   
Sbjct: 2   LDNLTNRLARVMKTLKGEARLTETNIGDALREVRMALLEADVALPVVKDFIAAVKEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V   + K++    +  N++ +  P ++L+ G+ G GKTT +GKL
Sbjct: 62  EEVIGSLSPGQALIGVVHAELTKIMGDAHEGINFN-TQPPAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +  +   KV++ + D +R AAI+QLK  A +   DF  S +G    A+A +A   A+
Sbjct: 121 AKFLKENHKKKVLVVSCDVYRPAAIEQLKSVAGQAGVDFFPSAVGEKPEAIAADAIDWAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  +MA I ++   +       P   L V+DA  GQ+A+   +
Sbjct: 181 RHYHDVLLVDTAGRLAIDEEMMAEIKRLHAAID------PIETLFVVDAMLGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + +      P+ F GVGE ++ LE F  +  ++ I
Sbjct: 235 AFNEALPLTGVVLTKLDGDARGGAALSVRHITGKPIKFAGVGEKLSGLEAFHPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|16803843|ref|NP_465328.1| hypothetical protein lmo1803 [Listeria monocytogenes EGD-e]
 gi|47097386|ref|ZP_00234937.1| cell division ABC transporter, substrate-binding protein FtsY
           [Listeria monocytogenes str. 1/2a F6854]
 gi|224500033|ref|ZP_03668382.1| hypothetical protein LmonF1_10299 [Listeria monocytogenes Finland
           1988]
 gi|224501396|ref|ZP_03669703.1| hypothetical protein LmonFR_02555 [Listeria monocytogenes FSL
           R2-561]
 gi|254831596|ref|ZP_05236251.1| hypothetical protein Lmon1_09593 [Listeria monocytogenes 10403S]
 gi|254899500|ref|ZP_05259424.1| hypothetical protein LmonJ_06789 [Listeria monocytogenes J0161]
 gi|254912361|ref|ZP_05262373.1| cell division ABC transporter [Listeria monocytogenes J2818]
 gi|254936688|ref|ZP_05268385.1| cell division ABC transporter [Listeria monocytogenes F6900]
 gi|284802249|ref|YP_003414114.1| hypothetical protein LM5578_2005 [Listeria monocytogenes 08-5578]
 gi|284995391|ref|YP_003417159.1| hypothetical protein LM5923_1956 [Listeria monocytogenes 08-5923]
 gi|16411257|emb|CAC99881.1| lmo1803 [Listeria monocytogenes EGD-e]
 gi|47014234|gb|EAL05216.1| cell division ABC transporter, substrate-binding protein FtsY
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258609284|gb|EEW21892.1| cell division ABC transporter [Listeria monocytogenes F6900]
 gi|284057811|gb|ADB68752.1| hypothetical protein LM5578_2005 [Listeria monocytogenes 08-5578]
 gi|284060858|gb|ADB71797.1| hypothetical protein LM5923_1956 [Listeria monocytogenes 08-5923]
 gi|293590342|gb|EFF98676.1| cell division ABC transporter [Listeria monocytogenes J2818]
          Length = 328

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 188/312 (60%), Gaps = 10/312 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G  
Sbjct: 8   KDKITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFE 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVIL 115
              ++V+ L  +   +++S      DV E+I + L+ + +    +            VIL
Sbjct: 68  TVMELVDTLRREVQLRNISDP---KDVQEVIVEKLVEIYQGDEKEDEALHIEEDGLTVIL 124

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AIDQL++W +RT  D +    G
Sbjct: 125 FVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEG 184

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL 
Sbjct: 185 SDPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLL 244

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE +
Sbjct: 245 VLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQM 304

Query: 296 NDLEPFVAKDFS 307
           +DL+ F A ++ 
Sbjct: 305 DDLQAFDANEYV 316


>gi|313679649|ref|YP_004057388.1| signal recognition particle-docking protein ftsy [Oceanithermus
           profundus DSM 14977]
 gi|313152364|gb|ADR36215.1| signal recognition particle-docking protein FtsY [Oceanithermus
           profundus DSM 14977]
          Length = 305

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 172/307 (56%), Gaps = 10/307 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +SW  +L +G   TS  L + +          + V EELE  LI +D+G+   Q+I++E+
Sbjct: 1   MSWFDRLKQGLKKTSQTLTKAV----PWGGDPEEVLEELEFALIAADVGLEATQEILKEV 56

Query: 71  LT------KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
                   +   K   V ++  D      + L             + HV+L+VGVNGVGK
Sbjct: 57  RESGKRDLREAVKQALVLQLEPDARRAKLRKLGFKPDAKKSTVEPKGHVVLMVGVNGVGK 116

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT I KL +   + G  V+ AAGDTFR+A   QL++W +RT    + +  GSD AALA++
Sbjct: 117 TTTIAKLGRYYKERGKSVLFAAGDTFRAAGGAQLELWGERTGIPVISAPEGSDPAALAFD 176

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K   A+ +D+L +DTAGRLH    LM  + K+ R + + DP  P  V  VLDATTGQN
Sbjct: 177 AAKARAARGMDLLFVDTAGRLHTKHNLMEELKKVKRSIAKADPGEPGEVWLVLDATTGQN 236

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q + F    G TG+I+TK+DGTA+GG L+PIV    +P+ F+GVGE   DL+PF A 
Sbjct: 237 GLEQAKKFDEAVGLTGVIVTKLDGTAKGGVLVPIVRELGVPIRFIGVGESAEDLQPFDAG 296

Query: 305 DFSAVIT 311
           ++   + 
Sbjct: 297 EYVEALL 303


>gi|49474776|ref|YP_032818.1| Signal recognition particle protein [Bartonella quintana str.
           Toulouse]
 gi|49240280|emb|CAF26753.1| Signal recognition particle protein [Bartonella quintana str.
           Toulouse]
          Length = 539

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   ++ +     L D        E+   L+ +D+ + VA+   + +  K   
Sbjct: 2   FESLQERLGSILSHLTGRGALSDQDVATALREIRRALLEADVALDVARSFTDRIREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +       Q V+  V + +  +L       + + +  P VI+++G+ G GKTT   KL
Sbjct: 62  AAIVKSIKPGQMVVKIVHDELVHVLGSEGVLSDLN-APAPVVIMMIGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++++    KV++A+ DT R AA +QL+   ++     +    G     +A  A + A+
Sbjct: 121 ARRLTNKHNKKVLMASLDTRRPAAQEQLRQLGEQAKLASLPIIAGQSPIDIATRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGR H +  LM  + ++       D   P+ ++ V D+ TGQ+A+    
Sbjct: 181 LGGYDVLLLDTAGRNHIDEALMLELAQIK------DSSLPYEIMLVADSLTGQDAVHLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+I+T+MD   RGG  + +      P+  +G+GE I+DLE F     +  I
Sbjct: 235 SFDERVGITGIILTRMDSDGRGGAALSMRAVTGKPIKAIGIGEKIDDLEEFHPSRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|256026652|ref|ZP_05440486.1| Signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp.
           D11]
 gi|289764649|ref|ZP_06524027.1| signal recognition particle [Fusobacterium sp. D11]
 gi|289716204|gb|EFD80216.1| signal recognition particle [Fusobacterium sp. D11]
          Length = 444

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + ++    I    +L +        E++  L+ +D+   V +    ++  K   
Sbjct: 2   LENLGNRFQDIFKKIRGHGKLSETNIKDALREVKMSLLEADVNYKVVKDFTNKISEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V++ + ++L   S        + P +I++ G+ G GKTT   KL
Sbjct: 62  TEVIRGVNPAQQFIKLVNDELVELLGGTSSKLTKGLRN-PTIIMLAGLQGAGKTTFAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K++L   D +R AAI QL++   +   D    E   D   +A  A ++A+ 
Sbjct: 121 AKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVDVYSEENSKDVVGIATRAIEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +I+DTAGRLH +  LM  + ++ + +K      P  +L V+DA  GQ+A+   E 
Sbjct: 181 INATYMIVDTAGRLHVDETLMEELKELKKAIK------PQEILLVVDAMIGQDAVNLAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+I+TK+DG  RGG  + I      P+ F+GVGE +ND+E F      + I 
Sbjct: 235 FNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKFIGVGEKLNDIEIFHPDRLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|311086926|gb|ADP67006.1| cell division protein FtsY [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 378

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 186/309 (60%), Gaps = 2/309 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K  +   ++  +L K   +T   L + I  I  S+++D+ + EELE+ ++ +DIG+   
Sbjct: 70  EKEQNTKNNFFLRLKKSLKTTKKNLGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTT 129

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +I+  L+     +D+     LY  +   +  +L  +  P     SH P VILVVGVNG 
Sbjct: 130 NRIISNLIKDVNREDLKNSEKLYFLLKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGT 188

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT + KL++K    G  +MLAA DTFR+A I+QL+      +   +    GSD AA+ 
Sbjct: 189 GKTTTVAKLAEKYKLEGKSIMLAAADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVI 248

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K A++KK+DVLIIDTAGRLHN   L+  + K++RV+K++D  APH  L ++D+  G
Sbjct: 249 FDAVKSAKSKKIDVLIIDTAGRLHNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNG 308

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN ++Q E+FH     TG+I+TK+DGTA+GG +  +    +IP+ ++G+GE + DL  F 
Sbjct: 309 QNTIQQTEIFHKALNLTGIIITKLDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFN 368

Query: 303 AKDFSAVIT 311
           +++F   I 
Sbjct: 369 SQEFIESIF 377


>gi|166031775|ref|ZP_02234604.1| hypothetical protein DORFOR_01476 [Dorea formicigenerans ATCC
           27755]
 gi|166028228|gb|EDR46985.1| hypothetical protein DORFOR_01476 [Dorea formicigenerans ATCC
           27755]
          Length = 361

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 127/311 (40%), Positives = 184/311 (59%), Gaps = 4/311 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           ++ +A E   + R+L  G   T   +  G+  I +    +D+   EELE++LI  D+GV 
Sbjct: 44  SKSMAEEKKGFFRRLVDGLTKTRDNIVSGMDSIFNGFTHIDEDFYEELEEVLIMGDLGVQ 103

Query: 62  VAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               I+++L  K   + +         + + I + +        ++F  R  V++V+GVN
Sbjct: 104 ATYDILDKLREKVKTQHIKEPVECRQILIDSIKEQMD--VGEAAYEFEERTSVVMVIGVN 161

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ K+     KV+LAA DTFR+AA +QLK WA+R  A+ +  + GSD AA
Sbjct: 162 GVGKTTTIGKLAGKLRSQNKKVVLAAADTFRAAAGEQLKEWANRAQAELIGGQEGSDPAA 221

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A   A+A+  DVL+IDTAGRLHN   LM  + KM +++ R  P A    L VLDAT
Sbjct: 222 VVYDAVAAAKARHADVLLIDTAGRLHNKKNLMEELRKMNKIIDREFPDAYRETLVVLDAT 281

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q + F+ VA  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I+DL+ 
Sbjct: 282 TGQNALAQAKEFNEVADITGVILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIDDLQK 341

Query: 301 FVAKDFSAVIT 311
           F +  F   + 
Sbjct: 342 FNSDTFVNALF 352


>gi|257124951|ref|YP_003163065.1| signal recognition particle protein [Leptotrichia buccalis
           C-1013-b]
 gi|257048890|gb|ACV38074.1| signal recognition particle protein [Leptotrichia buccalis
           C-1013-b]
          Length = 446

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   + K+    +    +L +        E+   L+ +D+  +VA+  V ++  K   
Sbjct: 2   FNNLGDRFKDIFKKVSGQGKLTENNMKDALREVRLALLEADVNYSVAKNFVAKIREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q+ +  V++ + ++L   +          P ++++ G+ G GKTT  GKL
Sbjct: 62  EQVISGVNPTQQFVKIVNDELVEVLGGSNVSI-AKADKNPTIVMLSGLQGAGKTTFSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G K  L   D +R AA  QLK+  ++        +   D   +  +  + ++ 
Sbjct: 121 AKHLRSKGEKPFLIGADVYRPAAKKQLKVLGEQVKVPVFTIDESIDPLEIVKQGIEASKT 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +    +IIDTAGRLH +  LM  +  +       D   P+ +L V+D  TGQ+A+   + 
Sbjct: 181 EHATYVIIDTAGRLHIDEQLMHELQDIK------DCFNPNEILLVVDGMTGQDAVNVAKE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TK+DG  RGG  + +      P+ F+  GE ++D+ PF     ++ I 
Sbjct: 235 FNEQLDITGVVLTKLDGDTRGGAALSVKEVAGKPIKFISEGEKLDDIAPFHPDRLASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|167758290|ref|ZP_02430417.1| hypothetical protein CLOSCI_00628 [Clostridium scindens ATCC 35704]
 gi|167664187|gb|EDS08317.1| hypothetical protein CLOSCI_00628 [Clostridium scindens ATCC 35704]
          Length = 314

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 131/313 (41%), Positives = 185/313 (59%), Gaps = 6/313 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           M+ ++   ES+ + ++L  G   T   +  GI  I S    +DD   EELE++LI  D+G
Sbjct: 1   MAEEQ--KESMGFFKRLVSGLGKTRDNIVSGIDSIFSGFSHIDDDFYEELEEVLIMGDLG 58

Query: 60  VAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           V     I+E+L  K   + +    +    + + I + +        ++F  +  V++V+G
Sbjct: 59  VTATYDILEDLKAKVKEQHIKEPSQCRQLLIDSIKEQMD--VGETAYEFEDQTSVVMVIG 116

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K+     KV+LAA DTFR+AA +QLK WA+R  AD +  + GSD 
Sbjct: 117 VNGVGKTTTIGKLAGKLRAQNKKVVLAAADTFRAAAGEQLKEWANRAQADLIGGQEGSDP 176

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+A   A+A+  DVL+ DTAGRLHN   LM  + KM R++ R  P A    L VLD
Sbjct: 177 ASVVYDAVAAAKARHADVLLCDTAGRLHNKKNLMEELKKMNRIIDREYPEAFRETLVVLD 236

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNAL+Q   F+ VA  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I DL
Sbjct: 237 ATTGQNALQQAREFNEVADITGIILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIEDL 296

Query: 299 EPFVAKDFSAVIT 311
           + F A  F   + 
Sbjct: 297 QKFDADTFVNALF 309


>gi|255037144|ref|YP_003087765.1| signal recognition particle protein [Dyadobacter fermentans DSM
           18053]
 gi|254949900|gb|ACT94600.1| signal recognition particle protein [Dyadobacter fermentans DSM
           18053]
          Length = 440

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL      +    R+ D       +E+   L+ +D+   VA++I + +  K   
Sbjct: 2   FENLQDKLNNAFRTLKGKDRISDINVAATTKEVRKALVDADVNFKVAKEITDRIREKAID 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + +       Q  +  V E + +++   ++  N      P VIL+ G+ G GKTT  GKL
Sbjct: 62  RKILISVEPGQMFVKIVQEELTELMGGNAEGINIKGD--PAVILIAGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G +V+L A D +R AAIDQLK+  ++   +        +A ++A  A   A+ 
Sbjct: 120 ASLLKKQGRQVLLTACDVYRPAAIDQLKVLGEQIGVEVYSEPENKNAVSIAQNAVSHAKK 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
               ++I+DTAGRL  + ++M  +  +   +K      P  +L V+D+ TGQ+A+   + 
Sbjct: 180 SGKKIVIVDTAGRLAVDEVMMKEVEDIKTSVK------PSEILFVVDSMTGQDAVNTAKT 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG ARGG  + I    + P+ ++  GE +  L+ F     ++ I 
Sbjct: 234 FNERLDFDGVVLTKLDGDARGGAALSIRQVVEKPIKYISTGEKMEALDSFYPDRMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|86133270|ref|ZP_01051852.1| signal recognition 54 kDa protein (SRP54) [Polaribacter sp. MED152]
 gi|85820133|gb|EAQ41280.1| signal recognition 54 kDa protein (SRP54) [Polaribacter sp. MED152]
          Length = 442

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 150/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL + +  +    ++ +       +E+   L+ +D+   +A++  +++ T+   
Sbjct: 2   FNNLSDKLDKALHTLKGHGQITEINVAETLKEVRRALLDADVNFKIAKEFTKKVQTEAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  V + + K++   +   N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QDVLTTLNPGQLMVKLVKDELTKLMGGETVGVNLGGS--PTVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      +V+L   D +R AAI+QL++  ++   +       ++   ++  A K A+
Sbjct: 120 ANYLKTKKSKQVLLVGCDVYRPAAINQLQVVGEQIGVEVYAEVGNNNPVEISQNAIKHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   +V+IIDTAGRL  +  +M  I  + + +       P   L V+D+ TGQ+A+   +
Sbjct: 180 ANGKNVVIIDTAGRLAVDQEMMTEISNIHKAIT------PQETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +    G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 AFNDILNFDGVVLTKLDGDTRGGAALSIKSVVNKPIKFIGTGEKMEAIDVFYPDRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|309792455|ref|ZP_07686919.1| signal recognition particle protein [Oscillochloris trichoides DG6]
 gi|308225443|gb|EFO79207.1| signal recognition particle protein [Oscillochloris trichoides DG6]
          Length = 460

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 150/306 (49%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREEL---EDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+     + S  +L +D VRE +      L+ +D+   V +  V ++  +   
Sbjct: 2   FESLSDRLQTVFQKLGSKGKLTEDDVREAMKQVRLALLEADVNFKVVKDFVAKVTEQAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q+V+  V + +  +L   + P        P VI++VG+ G GKTT+  KL
Sbjct: 62  EEVTKSLTPHQQVVKIVHQELINLLGTDNVPLQES-RPGPTVIMLVGLQGTGKTTLSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G +V+LAA D +R AAI QL+    +                +A  A + A+ 
Sbjct: 121 ALHLRKKGRRVLLAACDIYRPAAITQLESLGKQLGITVYSEPNSKHPPEIATRAVELAKK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +V+I+DTAGRL  +  LM  +  +   ++      P   L V+DA TGQ A+R  E 
Sbjct: 181 ELYNVVIVDTAGRLQIDEPLMKELEDIDACVQ------PIERLLVVDAMTGQEAVRVAET 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN--DLEPFVAKDFSAV 309
           F+     TGL+MTKMDG ARGG  + +     +P+ F+  GE I+   LE F     ++ 
Sbjct: 235 FNQRVKVTGLVMTKMDGDARGGAALSVRSVTGVPIKFISSGEKIDLNTLEAFHPDRLASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|311744098|ref|ZP_07717904.1| signal recognition particle protein [Aeromicrobium marinum DSM
           15272]
 gi|311313228|gb|EFQ83139.1| signal recognition particle protein [Aeromicrobium marinum DSM
           15272]
          Length = 511

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 143/308 (46%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L+    ++    RL +   +    E+   L+ +D+ V+V +  V  +  +   
Sbjct: 2   FDSLQDRLQSAFKNLRGKGRLTEADIDATAREIRLALLEADVSVSVVRDFVATVKERSAG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSRALNPGQQVVKIVNEELIGILGGETRRIRF-AKNGPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---GSDAAALAYEAFKQ 188
              + + G   ML A D  R  A+ QL++   +        E      D   +A  A ++
Sbjct: 121 GLWLKEQGKSPMLVAADLQRPNAVTQLQVVGQQAGVTVFAPEPGNGTGDPVQVARRAMEE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGRL  ++ LM     +   +       P  VL V+DA  GQ+A++ 
Sbjct: 181 ARRTLHDVVVVDTAGRLGIDAELMRQAADIRAAVD------PDEVLFVIDAMIGQDAVQT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG+++TK+DG ARGG  + +      P+ F   GE + D + F     ++
Sbjct: 235 AQAFADGVDFTGVVLTKLDGDARGGAALSVRQVTGRPIMFASTGEKLTDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|332977903|gb|EGK14651.1| signal recognition particle protein Ffh [Psychrobacter sp.
           1501(2011)]
          Length = 516

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  I  S +L++        E+   L+ +D+ + + +  V+ +  +   
Sbjct: 2   FDTLTERLSGSLRKISGSGQLNEDNIKDTLREVRMALLEADVALPITRDFVKRVKEQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + + +M+   ++         P + L+ G+ G GKTT   KL
Sbjct: 62  QEVLKELAPGQAFVKIVYDELTEMMGSANQQLEM-TGKPPVIYLLAGLQGAGKTTTASKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVML + D +R AAI QL+  A + +A FV S    +   +A  A ++A+
Sbjct: 121 AKYLQERHKKKVMLVSADVYRPAAIKQLEQVAGQVNAKFVNSSTDENPIDIAKRAIEEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D+LIIDTAGRLH +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 LQYQDILIIDTAGRLHIDEAMMDEIKALTAAVN------PSETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG GE ++ LE F  +  +  I
Sbjct: 235 AFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLDALEAFHPERIAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|49476256|ref|YP_034297.1| Signal recognition particle protein [Bartonella henselae str.
           Houston-1]
 gi|49239064|emb|CAF28367.1| Signal recognition particle protein [Bartonella henselae str.
           Houston-1]
          Length = 523

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   ++ +     L D        E+   L+ +D+ + VA+   + +  K   
Sbjct: 2   FESLQERLGFILSHLTGRGALSDQDVAAALREIRRALLEADVALDVARSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +       Q V+  V + +  +L       + + +  P VI+++G+ G GKTT   KL
Sbjct: 62  SAIVKSIKPGQMVVKIVHDELVHVLGNEGVLSDLN-APAPVVIMMIGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+++     KV++A+ DT R AA +QL+   ++     +    G     +A  A + A+
Sbjct: 121 AKRLTHKHNKKVLMASLDTRRPAAQEQLRQLGEQAKLASLPIIAGQSPVDIATRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGR H +  LM  + ++           PH ++ V D+ TGQ+A+    
Sbjct: 181 LSGYDVLLLDTAGRNHIDEALMLELVEIKACC------RPHEIMLVADSLTGQDAVHLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+I+T+MD   RGG  + +      P+  +G+GE I+DLE F     +  I
Sbjct: 235 SFDERVGITGIILTRMDSDGRGGAALSMRAVTGKPIKAIGIGEKIDDLEEFHPTRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|121606268|ref|YP_983597.1| signal recognition particle protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120595237|gb|ABM38676.1| signal recognition particle subunit FFH/SRP54 (srp54) [Polaromonas
           naphthalenivorans CJ2]
          Length = 452

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 17/302 (5%)

Query: 24  TSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            + KL   + ++    R+ +     +  E+   L+ +D+ + V +  +  +  K   ++V
Sbjct: 5   LTDKLSRLVKEMRGQARITESNVQDMLREVRMALLEADVALPVVRDFIARVKEKALGQEV 64

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                  Q ++  VS+ +   +       N   +  P VIL+ G+ G GKTT   KL+K 
Sbjct: 65  MGSLSPGQALVGIVSKELAATMGEGVSDINL-AAQPPAVILMAGLQGAGKTTTTAKLAKH 123

Query: 135 MSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           + +    KV+  +GD +R AAI+QLK+   +  A++  S      A +A  A   A+   
Sbjct: 124 LIEKRKKKVLTVSGDVYRPAAIEQLKVVTKQAGAEWFPSTPDQKPADIARAALDYAKRHF 183

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DVL++DTAGRL  +  LM  I ++  +LK      P   L V+DA  GQ+A+   + F 
Sbjct: 184 FDVLLVDTAGRLAIDEALMNEIKELHAILK------PIETLFVVDAMQGQDAVNTAKAFK 237

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                TG+I+TK DG +RGG  + +      P+ F G  E ++ LE F A+  +  I G 
Sbjct: 238 EALPLTGIILTKTDGDSRGGAALSVRQITGAPIKFSGTSEKLDGLEVFDAERHAGRILGM 297

Query: 314 LD 315
            D
Sbjct: 298 GD 299


>gi|313623285|gb|EFR93527.1| signal recognition particle-docking protein FtsY [Listeria innocua
           FSL J1-023]
          Length = 324

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 190/312 (60%), Gaps = 10/312 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G  
Sbjct: 4   KDKITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFE 63

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVIL 115
              ++V+ L  +   +++S      DV E+I + L+ + +  + +        +   VIL
Sbjct: 64  TVMELVDTLRREVQLRNISDP---KDVQEVIVEKLVDIYQGDDKEDETLHIEENGLTVIL 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AIDQL++W +RT  D +    G
Sbjct: 121 FVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL 
Sbjct: 181 SDPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE +
Sbjct: 241 VLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQM 300

Query: 296 NDLEPFVAKDFS 307
           +DL+ F A ++ 
Sbjct: 301 DDLQAFDANEYV 312


>gi|126696809|ref|YP_001091695.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543852|gb|ABO18094.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9301]
          Length = 492

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++ +       +E++  L+ +D+ ++V ++ + ++  K   
Sbjct: 2   FDELSSRFEDAVKGLRGEAKISENNINDALKEVKRALLDADVSLSVVKEFITDVKDKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V++ + K++   + P N +  + P VIL+ G+ G GKTT  GKL
Sbjct: 62  EEVVRGVNPGQKFIEVVNKELIKIMGNENSPLNEN-ENSPTVILMAGLQGAGKTTATGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQ 190
              + +   KV+L A D +R AA++QLK    +   +     E  S    +A EA   A 
Sbjct: 121 GLYLKEKDKKVLLVAADIYRPAAVEQLKTLGSQYELEVFSAKEKNSKPEEIAKEALNFAN 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               + +IIDTAGRL  +  +M+ + ++  V        P  VL V+D+  GQ A    +
Sbjct: 181 ENDFNSIIIDTAGRLQIDDSMMSEMVRIKEVSN------PDEVLLVVDSMIGQEAADLTK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G TG I+TK+DG +RGG  + I      P+ F+GVGE I  L+PF  +  ++ I
Sbjct: 235 SFHEKVGITGAILTKLDGDSRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|292670609|ref|ZP_06604035.1| signal recognition particle protein [Selenomonas noxia ATCC 43541]
 gi|292647775|gb|EFF65747.1| signal recognition particle protein [Selenomonas noxia ATCC 43541]
          Length = 458

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 139/304 (45%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    +L +        E+   L+ +D+   V +  V+ +  +   
Sbjct: 3   FENLSDRLQGIFKKMRGHGKLTEEDVNDAMREVRMALLEADVNFKVVKDFVKRVKERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV     + Q V+  V E +  ++       N    + P VI++ G+ G GKTT  GKL
Sbjct: 63  QDVLDTLTAAQAVIKIVDEELTALMGGTESRLNIS-PNPPTVIMLAGLQGSGKTTSAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G + +L A D +R AAI QL++   +              A         A  
Sbjct: 122 ALMLKKQGKRPLLVADDIYRPAAIKQLEVIGAQVDVPVFSQGQEDAVAIARAAIAYSAAH 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+IIDTAGRL  +  LM  +  +   +K      PH +L V+DA TGQ A+   + 
Sbjct: 182 AN-DVVIIDTAGRLQIDETLMQELRDIKAAVK------PHEILLVVDAMTGQEAVNVAQS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A  G  G+IMTK+DG ARGG  + I      P+ F+G+GE +  LE F     ++ I 
Sbjct: 235 FDASLGLDGVIMTKLDGDARGGAALSIKAVTGCPLKFVGMGEKLEPLEVFHPDRMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|146298009|ref|YP_001192600.1| signal recognition particle protein [Flavobacterium johnsoniae
           UW101]
 gi|146152427|gb|ABQ03281.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Flavobacterium johnsoniae UW101]
          Length = 450

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL +    +    ++ +       +E+   L+ +D+   +A+    ++  K   
Sbjct: 2   FDNLSDKLDKAFHILKGHGKITEVNVADTLKEVRRALLDADVNFKIAKDFTTKVKEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  V + + +++       N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QDVLTTLQPGQLLVKLVKDELTELMGGDVAGVNL--SGNPSVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAI+QL +  D+   +        +   +A  A K A+
Sbjct: 120 ANFLKTKKNKKPLLVACDIYRPAAINQLHVVGDQIGVEVYSEPENKNPVEIAQNAIKHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   +V+I+DTAGRL  +  +M  I ++ + ++      P   L V+D+ TGQ+A+   +
Sbjct: 180 ANGFNVVIVDTAGRLAVDQEMMDEIARVHKAIQ------PQETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +    G+I+TK+DG  RGG  I I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 AFNDILNFDGVILTKLDGDTRGGAAISIKSVVNKPIKFVGTGEKMEAIDVFYPDRMAERI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|260495487|ref|ZP_05815613.1| signal recognition particle protein [Fusobacterium sp. 3_1_33]
 gi|260197024|gb|EEW94545.1| signal recognition particle protein [Fusobacterium sp. 3_1_33]
          Length = 443

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + ++    I    +L +        E++  L+ +D+   V +    ++  K   
Sbjct: 2   LENLGNRFQDIFKKIRGHGKLSETNIKDALREVKMSLLEADVNYKVVKDFTNKISEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V++ + ++L   S        + P +I++ G+ G GKTT   KL
Sbjct: 62  TEVIRGVNPAQQFIKLVNDELVELLGGTSSKLTKGLRN-PTIIMLAGLQGAGKTTFAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K++L   D +R AAI QL++   +   D    E   D   +A  A ++A+ 
Sbjct: 121 AKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVDVYSEENSKDVVGIATRAIEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +I+DTAGRLH +  LM  + ++ + +K      P  +L V+DA  GQ+A+   E 
Sbjct: 181 INATYMIVDTAGRLHVDETLMEELKELKKAIK------PQEILLVVDAMIGQDAVNLAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+I+TK+DG  RGG  + I      P+ F+GVGE +ND+E F      + I 
Sbjct: 235 FNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKFIGVGEKLNDIEIFHPDRLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|315282801|ref|ZP_07871126.1| signal recognition particle-docking protein FtsY [Listeria marthii
           FSL S4-120]
 gi|313613556|gb|EFR87375.1| signal recognition particle-docking protein FtsY [Listeria marthii
           FSL S4-120]
          Length = 325

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 188/312 (60%), Gaps = 10/312 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G  
Sbjct: 5   KDKITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFE 64

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVIL 115
              ++V+ L  +   +++S      DV E+I + L+ + +    +            VIL
Sbjct: 65  TVMELVDTLRREVQLRNISDP---KDVQEVIVEKLVEIYQGDEKEDEALHIEEDGLTVIL 121

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AIDQL++W +RT  D +    G
Sbjct: 122 FVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEG 181

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL 
Sbjct: 182 SDPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLL 241

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE +
Sbjct: 242 VLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQM 301

Query: 296 NDLEPFVAKDFS 307
           +DL+ F A ++ 
Sbjct: 302 DDLQAFDANEYV 313


>gi|305665094|ref|YP_003861381.1| signal recognition particle protein [Maribacter sp. HTCC2170]
 gi|88709846|gb|EAR02078.1| signal recognition particle protein [Maribacter sp. HTCC2170]
          Length = 446

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL + +  +    ++ +       +E+   L+ +D+   +A++    +  K   
Sbjct: 2   FDNLSEKLDKALHVLKGHGQITEINVAETTKEVRRALLDADVNFKIAKEFTNRVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++   ++    D S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  HNVLTSLQPGQLMVKIVKDELTQLMGGETEGI--DLSGTPSVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAIDQL +  D+   +       +D  +LA      A+
Sbjct: 120 ANFLKTKKSKKPLLVACDVYRPAAIDQLHVVGDQIGIEVYSDRENNDPVSLAQAGVAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   +V+IIDTAGRL  +  +M  I  +   +K      P   L V+D+ TGQ+A+   +
Sbjct: 180 ANGHNVVIIDTAGRLAVDEKMMTEISNIHGAVK------PQETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V    G+I+TK+DG  RGG  I I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 AFNDVLNFDGVILTKLDGDTRGGAAISIKSVVDKPIKFIGTGEKMEAIDVFHPSRMAERI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|298253307|ref|ZP_06977099.1| signal recognition particle GTPase [Gardnerella vaginalis 5-1]
 gi|297532702|gb|EFH71588.1| signal recognition particle GTPase [Gardnerella vaginalis 5-1]
          Length = 556

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 147/322 (45%), Gaps = 32/322 (9%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLSNAFKHLRSKGKLSESDIDGTIREIRRALLDADVALEVVRSFTARIRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
             ++VS      Q+V+  V++ + ++L   + +  N+   + P VI++ G+ G GKTT+ 
Sbjct: 62  LGEEVSHALNPAQQVVKIVNDELTQVLGAGVDRQLNF-AKYPPTVIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE--------------- 173
           GKL   + DAG   +L A D  R  A+ QL++  +R        E               
Sbjct: 121 GKLGYWLKDAGHTPLLVAADLQRPNAVTQLQVVGERAGVPVFAPEKGVQTGGSAISLPWF 180

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D   +A ++   A+ K  D +IIDTAGRL  +  L      M +     D   P  V
Sbjct: 181 TKGDPVKVARDSINYAREKMYDTVIIDTAGRLGVDEEL------MKQARNIRDAVQPQEV 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+DA  GQ+A+R  + F+     TG++++K+DG ARGG  + +      P+ F   GE
Sbjct: 235 LFVIDAMIGQDAVRTAQAFNDGVNFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGE 294

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
           G+ D E F     ++ I    D
Sbjct: 295 GLKDFEIFHPDRMASRILDMGD 316


>gi|283782828|ref|YP_003373582.1| signal recognition particle protein [Gardnerella vaginalis 409-05]
 gi|297242896|ref|ZP_06926834.1| signal recognition particle GTPase [Gardnerella vaginalis AMD]
 gi|283441946|gb|ADB14412.1| signal recognition particle protein [Gardnerella vaginalis 409-05]
 gi|296889107|gb|EFH27841.1| signal recognition particle GTPase [Gardnerella vaginalis AMD]
          Length = 556

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 147/322 (45%), Gaps = 32/322 (9%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLSNAFKHLRSKGKLSESDIDGTIREIRRALLDADVALEVVRSFTARIRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
             ++VS      Q+V+  V++ + ++L   + +  N+   + P VI++ G+ G GKTT+ 
Sbjct: 62  LGEEVSHALNPAQQVVKIVNDELTQVLGAGVDRQLNF-AKYPPTVIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE--------------- 173
           GKL   + DAG   +L A D  R  A+ QL++  +R        E               
Sbjct: 121 GKLGYWLKDAGHTPLLVAADLQRPNAVTQLQVVGERAGVPVFAPEKGVQTGGSAISLPWF 180

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D   +A ++   A+ K  D +IIDTAGRL  +  L      M +     D   P  V
Sbjct: 181 TKGDPVKVARDSINYAREKMYDTVIIDTAGRLGVDEEL------MKQARNIRDAVQPQEV 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+DA  GQ+A+R  + F+     TG++++K+DG ARGG  + +      P+ F   GE
Sbjct: 235 LFVIDAMIGQDAVRTAQAFNDGVNFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGE 294

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
           G+ D E F     ++ I    D
Sbjct: 295 GLKDFEIFHPDRMASRILDMGD 316


>gi|315497314|ref|YP_004086118.1| signal recognition particle-docking protein ftsy [Asticcacaulis
           excentricus CB 48]
 gi|315415326|gb|ADU11967.1| signal recognition particle-docking protein FtsY [Asticcacaulis
           excentricus CB 48]
          Length = 313

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 134/314 (42%), Positives = 200/314 (63%), Gaps = 2/314 (0%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  +   W  +LT+G + TS +L E +T +  +++ LD    E LED+LI SD G  +A 
Sbjct: 1   MTEKKPGWFSRLTQGLSKTSQQLTEQVTSVFVANKTLDAAAVEALEDMLIESDFGPHIAA 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            I  ++  K++A       V   ++E I + L      F+     +P+++L VGVNG GK
Sbjct: 61  SIAGKMAAKKFAS-TDDYAVKEALAEAIAEELKGREDRFDPLSGPKPYIVLFVGVNGSGK 119

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT +GK++  ++  G KV++ AGDTFR+AA++QLK+WA+R  ADF+  + G+DAA LAY+
Sbjct: 120 TTTLGKIAAALTTKGAKVLIVAGDTFRAAAVEQLKVWAERAKADFMGRKTGADAAGLAYD 179

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A  +A+ +  DV++IDTAGRL N   LM  + K++RV+K++DP APH  L VLDAT G+N
Sbjct: 180 ATVRAKEEGYDVVLIDTAGRLQNKQQLMDELLKIVRVIKKVDPDAPHETLLVLDATVGRN 239

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q ++F   A  +GL+MTK+DGTARGG L+PI      P+  +GVGE I+DL+PF A 
Sbjct: 240 ALSQEQIFGRQAFVSGLVMTKLDGTARGGILVPIAKASDAPIKLIGVGEDIDDLQPFRAS 299

Query: 305 DFSAVITGCLDYGE 318
            F+  + G    G+
Sbjct: 300 AFARSMVGLEPLGD 313


>gi|257463638|ref|ZP_05628029.1| Signal recognition particle receptor FtsY [Fusobacterium sp. D12]
          Length = 347

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 179/311 (57%), Gaps = 1/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60
            +     ++      L +    T   L   +  + SSR+ +DD + EELE+LL++SDIG+
Sbjct: 36  KDSSETEKAKGIFASLHEKLFQTREGLFSKMKSLFSSRKVIDDAMYEELEELLVQSDIGL 95

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            + QKIV +L      + V     +Y V + + +  +  S+           VIL+VGVN
Sbjct: 96  EMTQKIVRDLEGAVKKQGVKNPEEVYTVLKTVMEDYLIESEEKFPREEQNLQVILIVGVN 155

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++ K+   G KV+L AGDTFR+AA++QL+ WA R+ A+ V  + G+D  +
Sbjct: 156 GVGKTTTIGKIAAKLKKEGKKVILGAGDTFRAAAVEQLEEWARRSEAELVKGKEGADPGS 215

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++   +A+    DV IIDTAGRLHN   LM  + K+  V+++      +  + V+D T
Sbjct: 216 VVFDTLSKAEEIGADVAIIDTAGRLHNKGYLMKELEKINNVVRKKIGDRYYESILVIDGT 275

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q + F+ V   TG I+TK+DGTA+GG +  +    + P+ F+GVGE I DL  
Sbjct: 276 TGQNALNQAKEFNEVTRLTGFIITKLDGTAKGGIVFSLSELLQKPIRFIGVGEKIEDLRK 335

Query: 301 FVAKDFSAVIT 311
           F  KDF A + 
Sbjct: 336 FSKKDFIAALF 346


>gi|157692275|ref|YP_001486737.1| signal recognition particle-docking protein [Bacillus pumilus
           SAFR-032]
 gi|157681033|gb|ABV62177.1| signal recognition particle-docking protein [Bacillus pumilus
           SAFR-032]
          Length = 328

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 122/309 (39%), Positives = 185/309 (59%), Gaps = 4/309 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K   ++ S   K   G   T    +  + ++IS  R++D+   EELE++LI +D+G  
Sbjct: 8   KEKFTQQTDSVSEKFKDGLEKTRNSFQGRVNELISRYRKVDEDFFEELEEVLIGADVGFT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
              ++++EL  +   +++     +  V SE + ++     +  +       R ++IL VG
Sbjct: 68  TVMEMIDELKKEVKLRNIQDPSEVQSVISEKLVEIYNSGEEQISALNIEDGRLNIILFVG 127

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K+ + G  V+LAAGDTFR+ AI+QL++W +R+    V    GSD 
Sbjct: 128 VNGVGKTTTIGKLANKLKNEGKSVILAAGDTFRAGAIEQLEVWGERSGVPVVKQTAGSDP 187

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+AK  DVLI DTAGRL N   LM  + K+ RV++R  P APH VL  LD
Sbjct: 188 AAVIYDAVQSAKAKNADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPDAPHEVLLALD 247

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q + F      TG+ +TK+DGTA+GG ++ I     IPV  +G+GE ++DL
Sbjct: 248 ATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELNIPVKLVGLGEKVDDL 307

Query: 299 EPFVAKDFS 307
           + F A+ + 
Sbjct: 308 QEFDAESYV 316


>gi|325287087|ref|YP_004262877.1| signal recognition particle protein [Cellulophaga lytica DSM 7489]
 gi|324322541|gb|ADY30006.1| signal recognition particle protein [Cellulophaga lytica DSM 7489]
          Length = 446

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL +    +    ++ +       +E+   L+ +D+   +A++    +  K   
Sbjct: 2   FNNLSEKLDKAFHVLKGHGQITEINVAETLKEVRRALLDADVNFKIAKEFTNRVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + +++   ++  N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTTLQPGQLMVKLVKDELTELMGGDAEGINL--SGTPSVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AAIDQL +  D+   +       ++  A+A      A+
Sbjct: 120 ANYLKTKKTKKPLLVACDVYRPAAIDQLHVVGDQIGVEVFSDRGNTNPVAIAEAGIAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   +V+IIDTAGRL  +  +M  I  + + +       P   L V+D+ TGQ+A+   +
Sbjct: 180 ANGHNVVIIDTAGRLAVDEEMMTEIANVHKAIN------PQETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V    G+I+TK+DG  RGG  I I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 AFNDVLNFDGVILTKLDGDTRGGAAISIKSVVTKPIKFIGTGEKMDAIDVFHPSRMAERI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|254689978|ref|ZP_05153232.1| Ffh, signal recognition particle protein [Brucella abortus bv. 6
           str. 870]
 gi|260755514|ref|ZP_05867862.1| signal recognition particle protein [Brucella abortus bv. 6 str.
           870]
 gi|260675622|gb|EEX62443.1| signal recognition particle protein [Brucella abortus bv. 6 str.
           870]
          Length = 523

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   LI +D+ + V +   + +  K   
Sbjct: 2   FETLQERLGSILNGLTGRGALSESDVTAALREVRRALIEADVSLEVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       + + +  P VI++VG+ G GKTT  GK+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELVEMLGTEGVAIDLN-APAPVVIMMVGLQGSGKTTTTGKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      +V++A+ DT R AA +QL+    +T  D +    G     +A  A + A+
Sbjct: 121 AKRLTECQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDTLPIIAGQSPVEIARRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+  +  GE ++ LE F  K  +  I
Sbjct: 235 NFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLIATGEKMDALEEFYPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|46198982|ref|YP_004649.1| signal recognition particle protein ffh [Thermus thermophilus HB27]
 gi|55981005|ref|YP_144302.1| signal recognition particle protein [Thermus thermophilus HB8]
 gi|46196606|gb|AAS81022.1| signal recognition particle protein ffh [Thermus thermophilus HB27]
 gi|55772418|dbj|BAD70859.1| signal recognition particle protein [Thermus thermophilus HB8]
          Length = 434

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 145/304 (47%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + +L+E I  +    R+ +        E+   LI +D+ + VA+  VEE+  +   
Sbjct: 2   FQQLAARLQEAIDRLRGRGRITEEDLKGTLREIRRALIEADVNLEVARAFVEEVRERALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       + VL  V E + + L    +P +     R +V  +VG+ G GKTT   KL
Sbjct: 62  RKVLESLTPAEVVLATVYEALKEALGG--EPKHPQLKDR-NVWFLVGLQGSGKTTTAAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL++  ++     +  + G    ++     ++A+ 
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRVLGEKVGVPVLEVQDGESPESIRRRVEERARL 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++++DTAGRL  +  LM  + ++   L       P  VL VLDA TGQ AL   + 
Sbjct: 179 EVRDLVLVDTAGRLQIDERLMEELVRLKAAL------RPDEVLLVLDAMTGQEALSVAQA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF     +  I 
Sbjct: 233 FDERVGVTGLVLTKLDGDARGGAALSARRVTGKPIYFAGVSERPEGLEPFYPDRLAGRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|312194948|ref|YP_004015009.1| signal recognition particle protein [Frankia sp. EuI1c]
 gi|311226284|gb|ADP79139.1| signal recognition particle protein [Frankia sp. EuI1c]
          Length = 519

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 143/307 (46%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    RL +   +    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FDTLSSRLETVFKSLRGRGRLSEADIDATAREIRVALLEADVALPVVRAFVAAIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   +          P VIL+ G+ G GKTT+ GKL
Sbjct: 62  VEVSQALNPAQQVIKIVNEELIGILGGQTANIRL-AKTPPTVILLAGLQGTGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              +   G   ML A D  R  A++QL++   R   +    E G+   D  A+A +A   
Sbjct: 121 GMWLKKQGHTPMLVAADLQRPNAVNQLQVVGARAGVEVFAPEPGNGIGDPVAVARDAIAH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGRL  +  LM     +   +K      P  +L V+DA  GQ+A+  
Sbjct: 181 ARRNVFDVVVVDTAGRLGVDQELMEQAADIRDAVK------PDEILFVVDAMVGQDAVST 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G +G+++TK+DG ARGG  + +      P+ F   GE + D + F  +  ++
Sbjct: 235 AMAFLDGVGFSGVVLTKLDGDARGGAALSVAHVTGRPIMFASTGEALGDFDVFHPERMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|327334314|gb|EGE76028.1| signal recognition particle protein [Propionibacterium acnes
           HL097PA1]
          Length = 528

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 149/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +  ++L      +    RL D   +    ++   L+ +D+ ++V ++ V  +  + + 
Sbjct: 2   FDTLQVRLASTFKGLRGKGRLTDADIDATTRQIRIALLEADVNLSVVKEFVAAIKERCHG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++S      Q+++  V+E + ++L   ++   +     P ++++ G+ G GKTT+ GKL
Sbjct: 62  EELSKALNPTQQIVKIVNEELVEILGGQTRTVRF-AKTPPTIVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++   + G   +LAA D  R  A+ QL++  +R        E G+   D   +A +A  +
Sbjct: 121 ARWFKEEGHSPLLAACDLQRPNAVTQLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+IIDTAGRL  ++ +MA    +           P   L V+DA  GQ+A+  
Sbjct: 181 AEHKLYDVVIIDTAGRLGVDAEMMAQAADIKTATD------PDETLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+++TK+DG ARGG  + I      P+ F   GEG+ D + F     ++
Sbjct: 235 AVAFQEGVGFDGVVLTKLDGDARGGAALSIARVVGKPIMFASSGEGLKDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|295836296|ref|ZP_06823229.1| signal recognition particle protein [Streptomyces sp. SPB74]
 gi|295825941|gb|EDY44271.2| signal recognition particle protein [Streptomyces sp. SPB74]
          Length = 513

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 148/307 (48%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL +   +    E+   L+ +D+ + V +  ++++  +   
Sbjct: 2   FDTLSDRLSATFKSLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIKKIKERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  EEVSKALNPAQQVIKIVNEELVGILGGETRRLRF-AKQPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + +   G   +L A D  R  A++QL + A+R        + G+   D   +A ++ + 
Sbjct: 121 GRWLQGQGHSPLLVACDLQRPNAVNQLSVVAERAGVGIYAPQPGNGVGDPVQVAKDSVEY 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+ DV+I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 ARTKQYDVVIVDTAGRLGIDQELMRQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       + F   GE +++ + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGKQIMFASNGEKLDEFDAFHPDRMAS 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|320008298|gb|ADW03148.1| signal recognition particle protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 515

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 146/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDTLSDRLSATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIANIKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVVKIVNEELVGILGGETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              +   G   +L A D  R  A++QL + A+R        E G+   D  A+A ++ + 
Sbjct: 121 GLWLKAQGHSPLLVACDLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVAVAKDSIEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  D++I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 AKAKVHDIVIVDTAGRLGIDEELMRQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       + F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGKQIMFASNGEKLEDFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|311898552|dbj|BAJ30960.1| putative signal recognition particle protein [Kitasatospora setae
           KM-6054]
          Length = 519

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 147/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  ++++  +   
Sbjct: 2   FDTLSDRLAATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIKQVKDRALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  SEVSGALNPAQQIIKIVNEELISILGGETRRLRF-AKTGPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              +       +L A D  R  A+ QL + A+R    F   + G+   D   +A ++ + 
Sbjct: 121 GHWLKSQKHTPLLVACDLQRPNAVTQLGVVAERAGVAFYGPQPGNGVGDPVQVARDSIEY 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+ DV+I+DTAGRL  ++ LM     +   +       P  VL V+DA  GQ+A+  
Sbjct: 181 AKQKQYDVVIVDTAGRLGIDAELMRQAADIRAAID------PDEVLFVVDAMVGQDAVTT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG++++K+DG ARGG  + +       + F   GE ++D + F     ++
Sbjct: 235 AQAFLEGVDFTGVVLSKLDGDARGGAALSVAHVTGRQIMFASNGEKVDDFDAFHPDRMAS 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|296453537|ref|YP_003660680.1| signal recognition particle protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296182968|gb|ADG99849.1| signal recognition particle protein [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 603

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 148/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +    ++  + 
Sbjct: 55  AAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERA 114

Query: 75  YAKDVSV-----QRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 115 LGTEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 173

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CS 172
           GKL   + D+G   +L A D  R  A+ QL++  +R                        
Sbjct: 174 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPG 233

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +   D   +A ++ + A+ K  D +IIDTAGRL  +  L      M +     D   P+ 
Sbjct: 234 QTSGDPVKVARDSIELAKQKLYDTVIIDTAGRLGVDEEL------MKQARDIRDAVHPNE 287

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 288 ILFVIDAMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNG 347

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 348 EGLKDFEVFHPDRMASRILDMGD 370


>gi|317502602|ref|ZP_07960723.1| signal recognition particle protein [Prevotella salivae DSM 15606]
 gi|315666283|gb|EFV05829.1| signal recognition particle protein [Prevotella salivae DSM 15606]
          Length = 449

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGQITEINVAETLKDVRRALLDADVNFKVAKSFTDTVKQKAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + +  ++   +   +      P +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIVHDELADLMGGDT--VDIQLEGHPAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +    K +L A D +R AAI QLK+  ++            D   +A  A ++A+
Sbjct: 120 ANLLKNKRNKKPLLVACDVYRPAAIQQLKVVGEQIGVPVYSEPESKDVITIANNAVREAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I  +   L       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDVVIVDTAGRLAVDEEMMNEIANLKNALH------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFVGTGEKMEAIDAFHPVRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|237749054|ref|ZP_04579534.1| signal recognition particle [Oxalobacter formigenes OXCC13]
 gi|229380416|gb|EEO30507.1| signal recognition particle [Oxalobacter formigenes OXCC13]
          Length = 454

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 147/308 (47%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L + +  I    RL +     +  E+   L+ +D+ + V +  + ++  K   
Sbjct: 2   LDNLTQRLAKVVKTIRGEARLTETNTAEMLREVRLALLEADVALPVVKSFIGKVREKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           K+V       Q ++  V + + +++           +     P +IL+ G+ GVGKTT +
Sbjct: 62  KEVMDSLSPGQALVGVVQQELSQIMGADLGEKASQLNFATQPPAIILMAGLQGVGKTTTV 121

Query: 129 GKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL++ +      KV+  + D +R AAI QL+  + ++  DF  S+       +A  A  
Sbjct: 122 GKLARYLKQEKKKKVLTVSTDVYRPAAIKQLETVSGQSGVDFYGSDASE-PIQIAKAALD 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRL  +  +M  I  + + L       P   L V+DA  GQ+A+ 
Sbjct: 181 HAKRHFYDVLIVDTAGRLGIDEQMMQEISGLHKTLS------PIETLFVVDAMLGQDAIN 234

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG +RGG  + +      PV F+GV E ++ LE F     +
Sbjct: 235 VAKSFNDALPLTGIVLTKLDGDSRGGAALSVRHITGKPVKFVGVSEKLDGLEEFDPVRMA 294

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 295 NRILGMGD 302


>gi|94676755|ref|YP_588656.1| signal recognition particle protein [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|94219905|gb|ABF14064.1| signal recognition particle protein [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 449

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL   + +I    R+ +        E+   L+ +D+ + V Q+ +  +     +
Sbjct: 2   FEYLSEKLSFSLRNISDQGRITEVNIKDTLREVRMALLEADVALPVIQEFISRVKESALS 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q  +  +   +   +   +   N   +  P V+L+VG  GVGKTT + KL
Sbjct: 62  QKVNKSLTPGQEFIKIIRWELINTMGGQNDTLNL-AAPPPVVVLIVGQQGVGKTTSVVKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +      K+++ + D +R +AI+QL+      + DF  SEI      + + A   A+
Sbjct: 121 GKYLGERQRKKILVVSTDVYRPSAINQLETLTKNINIDFFPSEIVQKPLNIVHLALTYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRLH N+ +M  I  +   +K      P   + V+DA TGQ+A +  +
Sbjct: 181 QHFYDVLLVDTAGRLHTNNFMMNEIINIHIAIK------PVETIFVVDAMTGQDAAKVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+++   TG+I+TK+DGT+R G  + I      P+ FLGVGE I+ LEPF     +  I
Sbjct: 235 SFNSMLPLTGIILTKVDGTSRCGAALSISYITGKPIKFLGVGEKIDALEPFYPDRLANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|327398967|ref|YP_004339836.1| signal recognition particle-docking protein FtsY [Hippea maritima
           DSM 10411]
 gi|327181596|gb|AEA33777.1| signal recognition particle-docking protein FtsY [Hippea maritima
           DSM 10411]
          Length = 303

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 116/303 (38%), Positives = 177/303 (58%), Gaps = 4/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +++ +      T     E I +       + D   + +E+LLI SD GV    KI++ 
Sbjct: 1   MGFLKGIADKLFKTKQGFTEKIHEESKKDEPITDEYLDFIEELLIESDFGVKTTMKIMDA 60

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +     +  +  ++ +   + E+I  +L  + KP   +  H+  VILVVG+NG GKTT I
Sbjct: 61  INEGIDSGSIRTRQDVEIKIREVILSILKQVEKPL--EIKHKKFVILVVGINGSGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+   +D G KVML A DTFR+AAI+QL+ WA R SA  V    G+D AA+A++    
Sbjct: 119 GKLASLNTDKGKKVMLVAADTFRAAAIEQLEEWAKRASASIVKQNEGADPAAVAFDGVSS 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
             A+  DV+ +DTAGRLH    LM  + K+ + +++  P APH VL VLDAT GQNA+ Q
Sbjct: 179 GIARNYDVIFVDTAGRLHTQKNLMNEVIKIKKAVQKAYPEAPHEVLLVLDATIGQNAINQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F+     +G+++TKMDGTA+GG ++ I    KIP+ ++G+GE ++DL+ F A+DF  
Sbjct: 239 AREFNKALAISGIVLTKMDGTAKGGIIVAISEEFKIPIRYIGIGESLDDLKAFNARDFVE 298

Query: 309 VIT 311
            + 
Sbjct: 299 SVF 301


>gi|330826381|ref|YP_004389684.1| signal recognition particle protein [Alicycliphilus denitrificans
           K601]
 gi|329311753|gb|AEB86168.1| signal recognition particle protein [Alicycliphilus denitrificans
           K601]
          Length = 459

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 146/304 (48%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ + KL   + ++    R+ +     +  E+   L+ +D+ + V +  +  +  K   +
Sbjct: 3   SALTEKLTRLVKEMRGQARITESNVQDMLREVRMALLEADVALPVVRDFIARVKEKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q ++  V++ +   +       N   +  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVLGSLKPGQALVGIVNQELAATMGEGVADINL-AAQPPAVILMAGLQGAGKTTTTAKLA 121

Query: 133 KKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +    KV+  +GD +R AAI+QLK    +  A++  S        +A  A   A+ 
Sbjct: 122 KHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAGAEWFPSSPDQKPRDIALAALDYARK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  + +LM  I  +  VL       P   L V+DA  GQ+A+   + 
Sbjct: 182 HYFDVLLVDTAGRLAIDELLMQEIKDLHAVLN------PVETLFVVDAMQGQDAVNTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG +RGG  + +      P+ F GV E I+ LE F A+  +  + 
Sbjct: 236 FKEALPLTGIVLTKLDGDSRGGAALSVRAITGAPIKFAGVSEKIDGLEVFDAQRHAGRVL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|148652404|ref|YP_001279497.1| signal recognition particle protein [Psychrobacter sp. PRwf-1]
 gi|148571488|gb|ABQ93547.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Psychrobacter sp. PRwf-1]
          Length = 515

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   +  I  S +L +        E+   L+ +D+ + + +  V+ +  +   
Sbjct: 2   FDTLTERLSGSLRKISGSGQLTEDNIKDTLREVRMALLEADVALPITRDFVKRVKEQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q  +  V + + +M+   ++         P V L+ G+ G GKTT  GKL
Sbjct: 62  QEVLKELAPGQAFVKIVYDELTEMMGSANQQLEM-TGKPPVVYLLAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVML + D +R AAI QL+  A + +A FV S    +   +A  A ++A+
Sbjct: 121 AKYLQERHKKKVMLVSADVYRPAAIKQLEQVAAQVNAKFVNSSSDENPIDIAKRAIEEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D+LIIDTAGRLH +  +M  I  +           P   L V+D+ TGQ+A    +
Sbjct: 181 LQYQDILIIDTAGRLHIDEDMMDEIKALTAAAN------PSETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG GE ++ LE F  +  +  I
Sbjct: 235 AFNDALPLTGVILTKTDGDARGGAALSVRAITDKPIKFLGRGEKLDALEAFHPERIAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|308375922|ref|ZP_07445553.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu007]
 gi|308377166|ref|ZP_07441361.2| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu008]
 gi|308344837|gb|EFP33688.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu007]
 gi|308348785|gb|EFP37636.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           SUMu008]
          Length = 517

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 139/304 (45%), Gaps = 23/304 (7%)

Query: 28  LKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS--- 80
           +   +  +    RL D   +    E+   L+ +D+ + V +  +  +  +    +VS   
Sbjct: 1   MTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSAL 60

Query: 81  --VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
              Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKTT+ GKL+ ++   
Sbjct: 61  NPAQQVVKIVNEELISILGGETRELAF-AKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQ 119

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA------- 191
           G   +L A D  R AA++QL++  +R          G+   +   +    A A       
Sbjct: 120 GHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARA 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DV+I+DTAGRL  +  LMA    +   +       P  VL VLDA  GQ+A+     
Sbjct: 180 KHFDVVIVDTAGRLGIDEELMAQAAAIRDAIN------PDEVLFVLDAMIGQDAVTTAAA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F     ++ I 
Sbjct: 234 FGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|171057067|ref|YP_001789416.1| signal recognition particle protein [Leptothrix cholodnii SP-6]
 gi|170774512|gb|ACB32651.1| signal recognition particle protein [Leptothrix cholodnii SP-6]
          Length = 455

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 140/304 (46%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ S +L + +  +    R+ +     +  E+   L+ +D+ + V +  +  +  K   +
Sbjct: 3   SALSDRLSKLVKTMRGQARITESNVQDMLREVRMALLEADVALPVVRDFIARVKEKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q ++  V + +   +       N      P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVAGSLNPGQALVGIVHKELAATMGEGVSDINLTV-QPPAVILMAGLQGAGKTTTTAKLA 121

Query: 133 KKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K +      KV+  + D +R AAI+QLK    +  A++  S+       +A  A   A+ 
Sbjct: 122 KHLIERRKKKVLTVSADVYRPAAIEQLKTVTRQAGAEWFPSQGDQKPRDIALAAIDYARK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  +  LMA I  +   L       P   L V+DA  GQ+A+     
Sbjct: 182 HHFDVLLVDTAGRLAIDEALMAEIKDLHATLT------PIETLFVVDAMQGQDAINTARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG +RGG  + +      P+ F GV E I+ LE F A   +  + 
Sbjct: 236 FKEALPLTGIVLTKLDGDSRGGAALSVRSITGAPIKFAGVSEKIDGLEVFDADRHAGRVL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|329667084|gb|AEB93032.1| cell division protein [Lactobacillus johnsonii DPC 6026]
          Length = 429

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 172/299 (57%), Gaps = 6/299 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            +  KG   T+      +    +  R +D+   ++LEDLLI SD+G   A+++ + L  +
Sbjct: 123 ERYDKGLEKTNHSFGARLNAFFAKFRTVDENFFDDLEDLLIESDVGFETAEELTDSLRDE 182

Query: 74  RYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              ++        Q ++  + ++  K           D S +P+V L VGVNG GKTT I
Sbjct: 183 AKLQNAKSHDALKQVIVEKLVDIYDKGGEGEDSKLADDPSAKPNVYLFVGVNGAGKTTTI 242

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K++ D+G  VM+ A DTFR+ A++QL  W  R   + +     +D A++ Y+  K+
Sbjct: 243 GKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVEVITGPEKADPASVVYDGVKK 302

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ + +D L++DTAGRL N   LM+ + K+ R +K++ P  P+ VL VLD +TGQNAL Q
Sbjct: 303 AKERGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPDQPNEVLLVLDGSTGQNALLQ 362

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE ++DL  F A+ F+
Sbjct: 363 AKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKLVGLGEKVDDLANFDAEKFA 421


>gi|260890999|ref|ZP_05902262.1| signal recognition particle protein [Leptotrichia hofstadii F0254]
 gi|260859026|gb|EEX73526.1| signal recognition particle protein [Leptotrichia hofstadii F0254]
          Length = 445

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   + K+    +    +L +        E+   L+ +D+  +VA+  V ++  K   
Sbjct: 2   FNNLGDRFKDIFKKVSGQGKLTESNMKDALREVRLALLEADVNYSVAKNFVAKIREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q+ +  V++ + ++L   +          P V+++ G+ G GKTT  GKL
Sbjct: 62  EQVISGVNPTQQFVKIVNDELVEVLGGSNVSI-AKADKNPTVVMLSGLQGAGKTTFSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G K  L   D +R AA  QLK+  ++        +  +DA  +  +  + ++ 
Sbjct: 121 AKHLKSKGEKPFLIGADVYRPAAKKQLKVLGEQVKVPVFTIDESTDALEIVKQGIEASKT 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +    +IIDTAGRLH +  LM+ +  +       D   P+ +L V+D  TGQ+A+   + 
Sbjct: 181 EHATYVIIDTAGRLHIDEQLMSELQDIK------DSFNPNEILLVVDGMTGQDAVNVAKE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TK+DG  RGG  + +      P+ F+  GE ++D+ PF     ++ I 
Sbjct: 235 FNEQLDITGVVLTKLDGDTRGGAALSVKEVAGKPIKFISEGEKLDDIAPFHPDRLASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|295099000|emb|CBK88089.1| signal recognition particle subunit FFH/SRP54 (srp54) [Eubacterium
           cylindroides T2-87]
          Length = 471

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L + I +I    +L +     + +E+   L+ +D+   V ++ VE +  K  
Sbjct: 2   AFESLSERLNKAIKNISGQGKLTEKNMNEMLKEVRLSLLEADVNYNVVKEFVENVKEKAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V + I  +L       N+        +++VG+ G GKTT   K
Sbjct: 62  GQEVMDSLNPGQMVVKIVRDEIQTLLGEEDAKINFK-KQGITTLMMVGLQGTGKTTASAK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +++        +V+L A D  R AAI+QL+        +       + A   A +A + A
Sbjct: 121 IARYCKQKLAKRVLLVACDVVRPAAIEQLQTLGKSIDIEVFTLGAQTPAVETARQAMRYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             ++ D++I DTAGRLH +  LM  + +M  ++K      P  +L  +DA TGQ+ +   
Sbjct: 181 ADRQKDLVIFDTAGRLHIDDELMNELSEMKELVK------PDDILLTVDAMTGQDIVTVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TGL++TKMDG ARGGGL+ +     +PV F+  GE + DLE F     +  
Sbjct: 235 KEFNERLSITGLVVTKMDGDARGGGLLSVRSITNVPVLFVSSGEKVEDLEEFHPDRMADR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|260907261|ref|ZP_05915583.1| signal recognition particle protein [Brevibacterium linens BL2]
          Length = 535

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 149/307 (48%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     DG   E+   L+ +D+ + V +     +  +  +
Sbjct: 2   FNSLSDRLTATFKNLRGKGRLSEADVDGTIREIRRALLDADVALPVVRAFTGRIRERALS 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS      Q+V+  V++ +  +L   ++  N+     P VI++ G+ G GKTT+ GKL
Sbjct: 62  EEVSGALNPGQQVVKVVNDELVGILGGETRRLNY-AKRPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +  +   G + ML A D  R  A++QL+I  +R  A     E G+   +   +A ++ + 
Sbjct: 121 AYWLKSEGHRPMLVAADLQRPNAVNQLEIVGERAGAFVYAPEPGNGVGNPVQVATDSLEV 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  DV+I+DTAGRL  +  LM     +   +       P  VL V+DA  GQ+A++ 
Sbjct: 181 AKAKLHDVVIVDTAGRLGIDEELMQQAADIRSAVN------PDEVLFVIDAMIGQDAVKT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F      TG++++K+DG +RGG  + +      P+ F   GE + + E F     + 
Sbjct: 235 AEAFLEGVDFTGVVLSKLDGDSRGGAALSVAEVTGKPIMFASTGESMKEFEQFHPDRMAD 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|34763935|ref|ZP_00144833.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54 [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886292|gb|EAA23570.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54 [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 444

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + ++    I    RL +        E++  L+ +D+   V +    ++  K   
Sbjct: 2   LENLGNRFQDIFKKIRGHGRLSESNIKDALREVKMSLLEADVNYKVVKDFTNKISEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V++ + ++L   S        + P +I++ G+ G GKTT   KL
Sbjct: 62  TEVIRGINPAQQFIKLVNDELVELLGGTSSKLTKGLRN-PTIIMLAGLQGAGKTTFAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K++L   D +R AAI QL++   +   D    E   D   +A  A ++A+ 
Sbjct: 121 AKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVDVYSEEDTKDVVGIATRAIEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +I+DTAGRLH +  LM  + ++ R +K      P  +L V+DA  GQ+A+   E 
Sbjct: 181 INATYMIVDTAGRLHIDETLMEELKELKRAIK------PQEILLVVDAMIGQDAVNLAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+I+TK+DG  RGG  + I      P+ F+GVGE +ND+E F      + I 
Sbjct: 235 FNNALSVDGVILTKLDGDTRGGAALSIKAVVGKPIKFIGVGEKLNDIEIFHPDRLVSGIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|121595918|ref|YP_987814.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidovorax
           sp. JS42]
 gi|120607998|gb|ABM43738.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidovorax
           sp. JS42]
          Length = 459

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ + KL   + ++    R+ +     +  E+   L+ +D+ + V +  +  +  K   +
Sbjct: 3   SALTEKLTRLVKEMRGQARITEANVQDMLREVRMALLEADVALPVVRDFIARVKEKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q ++  V++ +   +       N + +  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVLGSLKPGQALVGIVNKELAATMGEGVADINLN-AQPPAVILMAGLQGAGKTTTTAKLA 121

Query: 133 KKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +    KV+  +GD +R AAI+QLK    +  A++  S        +A  A   A+ 
Sbjct: 122 KHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAGAEWFPSTPDQKPRDIALGALDYAKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  + +LM  I  +  VL       P   L V+DA  GQ+A+   + 
Sbjct: 182 HFFDVLLVDTAGRLAIDEVLMQEIKDLHAVLN------PVETLFVVDAMQGQDAVNTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG +RGG  + +      P+ F GV E I+ LE F A+  +  I 
Sbjct: 236 FKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPIKFAGVSEKIDGLEVFDAERHAGRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|152980389|ref|YP_001354675.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp.
           Marseille]
 gi|151280466|gb|ABR88876.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp.
           Marseille]
          Length = 455

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 141/308 (45%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L + +  +    RL +     +  E+   L+ +D+ +   ++ +  +  K   
Sbjct: 2   LDNLTQRLAKAVKTMRGEARLTETNTAEMLREVRLALLEADVALPAVREFISRVKEKAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           +DV       Q ++  V   +  ++     P     +     P +IL+ G+ G GKTT +
Sbjct: 62  EDVVGSLTPGQALVGVVQRELAAIMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +   K +   + D +R AAI QL+    +  ADF  S+       +A  A  
Sbjct: 122 GKLAKYLREQKKKKVLTVSADVYRPAAIGQLETVTAQVGADFFPSQATDKPVDIALAALD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLIIDTAGRL  +  +M  I  +   +K      P   L V+DA  GQ+A+ 
Sbjct: 182 YAKRHYHDVLIIDTAGRLGIDEAMMHEIKALHAAVK------PIETLFVVDAMLGQDAIN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+++TK+DG +RGG  + +      P+ F GV E ++ LE F     +
Sbjct: 236 TAKAFSDALPLTGIVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPARMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 DRILGMGD 303


>gi|239617834|ref|YP_002941156.1| signal recognition particle protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506665|gb|ACR80152.1| signal recognition particle protein [Kosmotoga olearia TBF 19.5.1]
          Length = 438

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 144/304 (47%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   KL      +    R+ +   +E    ++  L+ +D+   V ++ ++ +  K   
Sbjct: 2   FESLQEKLSRAFKTLSGKGRITESNIKEAVKQIKLSLLEADVNYKVVKEFIKSVQEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V + + K+L    K    + S  P  I++VG+ G GKTT   KL
Sbjct: 62  EEVLKSFTPDQQFIKIVRDELIKVLGE--KKVGLNLSGSPAKIMLVGLQGSGKTTTSAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AA+DQL     +        +   D   +  EA  +A  
Sbjct: 120 ALMLKKEGKHPLLVAADVYRPAAVDQLIQLGKQIEVPVYTGD-RKDPLKIVQEALDEAVK 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I DTAGRLH +  +M  + ++  ++K      P  +L V+DA TGQ+A+   + 
Sbjct: 179 NVHDVIIFDTAGRLHVDEKMMEEVRRIAEIVK------PDEILMVIDAMTGQDAVNSAKK 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG ++TK+DG ARGG ++ +      PV F+G+ E ++ LE F     +  I 
Sbjct: 233 FNDELELTGFVVTKIDGDARGGVILSVRHVTGKPVKFVGISEKMDGLEYFYPDRIAGRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|51246788|ref|YP_066672.1| cell division protein FtsY [Desulfotalea psychrophila LSv54]
 gi|50877825|emb|CAG37665.1| probable cell division protein FtsY [Desulfotalea psychrophila
           LSv54]
          Length = 470

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 176/304 (57%), Gaps = 9/304 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            +KL+   A +       +  +    + +D  + ++LE+LLI +D+GV+   +I+E    
Sbjct: 165 FKKLSARLAKSREAFTYQLDSLFLGKKEIDTNLLDDLEELLIMADLGVSTTDEILEFARR 224

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTV 127
           K   K++S    L    E I   +    +    D         P +I+V+GVNGVGKTT 
Sbjct: 225 KAKRKELSDPAALK---EAIKTKIASFIEEAQEDAELVMPESGPFIIMVIGVNGVGKTTT 281

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGK++KK  ++G  VML A DTFR+AA+ QLKIW +R        + G+D +++AY+A  
Sbjct: 282 IGKIAKKFVNSGNSVMLVAADTFRAAAVSQLKIWGERNEVPVFSRQEGADPSSVAYDAIA 341

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A A++ DV++IDTAGRLH  + LM  + K+ RV+ +    APH ++ V+DATTGQN + 
Sbjct: 342 KAVAEEYDVVLIDTAGRLHTQTNLMEELKKIKRVIGKNCAGAPHEIMLVIDATTGQNGIS 401

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q ++F+   G TG+ +TK+DGTA+GG +  I      P+ F+G+GE I+DL  F   +F 
Sbjct: 402 QAKLFNDAVGITGITLTKLDGTAKGGIVANISRELDTPIRFIGIGEQIDDLRDFDHNEFI 461

Query: 308 AVIT 311
             + 
Sbjct: 462 EALF 465


>gi|319649591|ref|ZP_08003747.1| signal recognition particle [Bacillus sp. 2_A_57_CT2]
 gi|317398753|gb|EFV79435.1| signal recognition particle [Bacillus sp. 2_A_57_CT2]
          Length = 450

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 151/306 (49%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  I  I    ++++  V+E   E+   L+ +D+   V ++ V+++  +  
Sbjct: 2   AFEGLADRLQNTIQKIRGKGKINEADVKEMMREVRLALLEADVNFKVVKEFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQEVLKSLTPGQQVIKVVKEELTELMGGEQSKIAVS-NRPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +        ML A D +R AAI QL+    + +              +A +A  +A
Sbjct: 121 LANLLRKKYNRNPMLVAADIYRPAAIKQLETLGKQLNMPVFSLGDQVSPVEIAKQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + ++  +        P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHVDEALMDELKQIKELSN------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+ + G TG+++TK+DG  RGG  + I      P+ F+G+GE ++ LE F  +  ++ 
Sbjct: 235 QSFNDLLGLTGVVLTKLDGDTRGGAALSIRSVTNTPIKFVGLGEKLDALEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|294011041|ref|YP_003544501.1| signal recognition particle subunit SRP54 [Sphingobium japonicum
           UT26S]
 gi|292674371|dbj|BAI95889.1| signal recognition particle subunit SRP54 [Sphingobium japonicum
           UT26S]
          Length = 483

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   L+ +D+ + V ++ VE+   +   
Sbjct: 3   FDSLSDRLGGVFDKLRGRGALTEDDVRAAMREVRIALLEADVALPVVRQFVEQATERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q V+  VS+ + + L   +     D +  P VI++VG+ G GKTT   K+
Sbjct: 63  SDVLRSVTPGQMVVKIVSDTLTETLGAETSDLLIDVT-PPAVIMMVGLQGSGKTTSTAKI 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++ +    KV++A+ D  R AA +QL +   +T    +    G     +A  A + A+
Sbjct: 122 ARRLKEKERKKVLMASLDVQRPAAQEQLAVLGTQTDVATLPIVPGQQPVDIARRALQAAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+++DTAGRLH +  LM  +  +  V           +L V+D+ TGQ+A+    
Sbjct: 182 LQGFDVVMLDTAGRLHVDQALMDEMKAVAEVSNPA------EILLVVDSLTGQDAVNVAT 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A    TG+++T+MDG ARGG  + +      P+ F G GE ++ +EPF     +  I
Sbjct: 236 SFTAQVPLTGVVLTRMDGDARGGAALSMRAVTGRPIKFAGTGEKLDAIEPFHPARVAQRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|312130725|ref|YP_003998065.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Leadbetterella byssophila DSM 17132]
 gi|311907271|gb|ADQ17712.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Leadbetterella byssophila DSM 17132]
          Length = 438

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   KL      +    ++ D       +E+   L+ +D+   VA+++ +++  +   
Sbjct: 2   FQSLQDKLNGAFKTLKGKGKITDINIASTVKEIRRALMDADVNYKVAKEVTDKVKQEAID 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V +     Q  +  V E +  ++    K    +    P V+L+ G+ G GKTT  GK 
Sbjct: 62  RKVMIAVEPGQLFVKIVQEELTALMGG--KAETVNLKGSPAVVLIAGLQGSGKTTFSGKF 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G +VML A D +R AAI QL++  ++   D        DA  +A  A  +A++
Sbjct: 120 ANYLKKQGKQVMLVAADVYRPAAITQLQVLGEQIGVDVYAEPENKDAVNIARNAVAEAKS 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K   ++I+DTAGRL  + ++M  +  + + +       P  +L V+D+ TGQ+A+   + 
Sbjct: 180 KGKSIVIVDTAGRLAVDEVMMTEVENIKKAIS------PSEILFVVDSMTGQDAVNTAKA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG +RGG  + I      PV F+  GE + DL+ F     ++ I 
Sbjct: 234 FNDRLDFDGVVLTKLDGDSRGGAALSIRAVVDKPVKFMSTGEKMEDLDIFHPDRMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|317061190|ref|ZP_07925675.1| cell division protein ftsY [Fusobacterium sp. D12]
 gi|313686866|gb|EFS23701.1| cell division protein ftsY [Fusobacterium sp. D12]
          Length = 350

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 179/311 (57%), Gaps = 1/311 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGV 60
            +     ++      L +    T   L   +  + SSR+ +DD + EELE+LL++SDIG+
Sbjct: 39  KDSSETEKAKGIFASLHEKLFQTREGLFSKMKSLFSSRKVIDDAMYEELEELLVQSDIGL 98

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            + QKIV +L      + V     +Y V + + +  +  S+           VIL+VGVN
Sbjct: 99  EMTQKIVRDLEGAVKKQGVKNPEEVYTVLKTVMEDYLIESEEKFPREEQNLQVILIVGVN 158

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++ K+   G KV+L AGDTFR+AA++QL+ WA R+ A+ V  + G+D  +
Sbjct: 159 GVGKTTTIGKIAAKLKKEGKKVILGAGDTFRAAAVEQLEEWARRSEAELVKGKEGADPGS 218

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++   +A+    DV IIDTAGRLHN   LM  + K+  V+++      +  + V+D T
Sbjct: 219 VVFDTLSKAEEIGADVAIIDTAGRLHNKGYLMKELEKINNVVRKKIGDRYYESILVIDGT 278

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL Q + F+ V   TG I+TK+DGTA+GG +  +    + P+ F+GVGE I DL  
Sbjct: 279 TGQNALNQAKEFNEVTRLTGFIITKLDGTAKGGIVFSLSELLQKPIRFIGVGEKIEDLRK 338

Query: 301 FVAKDFSAVIT 311
           F  KDF A + 
Sbjct: 339 FSKKDFIAALF 349


>gi|159479342|ref|XP_001697752.1| chloroplast SRP receptor [Chlamydomonas reinhardtii]
 gi|158274120|gb|EDO99904.1| chloroplast SRP receptor [Chlamydomonas reinhardtii]
          Length = 338

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 103/309 (33%), Positives = 157/309 (50%), Gaps = 4/309 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIGVAVA 63
           +  ++     +   G + T  +L   + ++++   L+D     EELE++LI +D G   A
Sbjct: 19  IKEKAAGDFDRFFAGTSKTRERLG-LVDEMLALWSLEDYEDSLEELEEVLISADFGPRTA 77

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KIV+ +     A  V     +   +   I ++L    +        RP V+L+VGVNG 
Sbjct: 78  LKIVDRIREGVKAGRVKSAEDIRASLKAAIVELLTARGRSSELKLQGRPAVVLIVGVNGA 137

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT +GK++ K    G KV L  GDTFR+AA +QL  W+ R  A       G+   A+ 
Sbjct: 138 GKTTTVGKIAYKYGKEGAKVFLIPGDTFRAAAAEQLAEWSRRAGATIGAFREGARPQAVI 197

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                +  +   D++++DTAGRLH    LM  +      +    P  P   L VLD TTG
Sbjct: 198 ASRTCKDASDVYDLILVDTAGRLHTAYKLMEELALCKAAVSNALPGQPDETLLVLDGTTG 257

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            N L Q + F+     +GLI+TK+DGTARGG ++ +V    +PV F+GVGE   DL+PF 
Sbjct: 258 LNMLNQAKEFNEAVRLSGLILTKLDGTARGGAVVSVVDQLGLPVKFIGVGETAEDLQPFD 317

Query: 303 AKDFSAVIT 311
            + F+  + 
Sbjct: 318 PEAFAEALF 326


>gi|51892603|ref|YP_075294.1| signal recognition particle [Symbiobacterium thermophilum IAM
           14863]
 gi|51856292|dbj|BAD40450.1| signal recognition particle [Symbiobacterium thermophilum IAM
           14863]
          Length = 454

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L+E    +    +L +        E+   L+ +D+   V +  +  +  +   
Sbjct: 2   FESLQERLQEAFKRLRGKGKLTESDVNEALREVRLALLEADVNFKVVKSFIARVKERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++       Q V+  V E +  ++   S   N      P +I++ G+ G GKTT   KL
Sbjct: 62  QEILESLNPAQMVIKIVYEELVALMGGESVGLNM-ADRPPTIIMLCGLQGAGKTTHAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+   G K +L A D +R AAI QL++  ++           +    +A  A   A  
Sbjct: 121 ALKLKKEGKKPLLVAADVYRPAAIKQLEVLGEQVGVPVYSEGDQASPVDIAQHAVAYAAE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ DV+I+DTAGRL  +  LM  + ++   ++      PH  L VLDA  GQ+A+   E 
Sbjct: 181 ERRDVIIVDTAGRLTIDEELMEELQQIKARIQ------PHDTLLVLDAMIGQDAVTTAEH 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G  G+I+TK+DG  RGG  + +      P+ F+GVGE ++ LEPF     ++ I 
Sbjct: 235 FHTKLGIDGVILTKLDGDTRGGAALSVREVTGRPIKFVGVGEKLDALEPFYPDRLASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|166713052|ref|ZP_02244259.1| signal recognition particle protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 458

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   +  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTMERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEVLKSLTPGQALIKIVRDELTAVMGAAAADLNLNVPA-PAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QLK  A++    F  S+       +   A   A+
Sbjct: 121 AKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDQAMMDEIKALHAAVN------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+G GE  + L+ F     ++ I
Sbjct: 235 AFGEALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVFHPDRVASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|170741843|ref|YP_001770498.1| signal recognition particle protein [Methylobacterium sp. 4-46]
 gi|168196117|gb|ACA18064.1| signal recognition particle protein [Methylobacterium sp. 4-46]
          Length = 526

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L   ++ +     L +        E+   L+ +D+ + V +   E++  +   
Sbjct: 2   FEGLSDRLSGILSGLTRRGALTEADVTAALREVRRALLEADVALEVVRDFTEKVREQAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++ +  ML   ++  + + +  P  IL+VG+ G GKTT   K+
Sbjct: 62  ATVLKSVTPGQMVVKIVNDQLVAMLGAEAEIIDLN-APSPVAILMVGLQGSGKTTTTAKI 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++++     +V++A+ DT R AA++QL +   +   + +    G  A  +A  A + A+
Sbjct: 121 ARRLNGREKRRVLMASLDTRRPAAMEQLAVLGKQVGVETLPIVAGQSAVQIAKRAMEAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR+  +  LM    ++           PH VL V DA TGQ+A+    
Sbjct: 181 LGGFDVVMLDTAGRITLDEALMQEAAEVKAA------ARPHEVLLVADALTGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG ARGG  + +      P+  +G GE ++ LE F     +  I
Sbjct: 235 AFDQRLGVTGIVLTRMDGDARGGAALSMRAVTGKPIKLVGTGEKVDALEEFHPARVANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|315656361|ref|ZP_07909250.1| signal recognition particle protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492920|gb|EFU82522.1| signal recognition particle protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 557

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 145/309 (46%), Gaps = 19/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F++   +L E   ++    +L D   +    ++   LI +D+ + V +     +  K Y 
Sbjct: 2   FSNLQDRLTESFKNLRKKGKLKDSDVDATVSDIRRALIEADVALEVVKDFTATVKEKAYG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
              S      Q+++  V++ +  +L    +  ++    + P V ++ G+ G GKTT+ GK
Sbjct: 62  AARSEALNPAQQIVKIVNDELINILGGEDRELHFSKPGKGPTVFMLAGLQGAGKTTLAGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L K ++    KV+L A D  R  A++QL+I  ++        E G+   D   +A  A  
Sbjct: 122 LGKWLAKENRKVLLVAADLQRPNAVNQLQIVGEQAGVTVFAPEPGNGVGDPVDVARRALA 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A     DV+I+DTAGRL  +  LMA    +       D   P  VL VLDA  GQ+A+R
Sbjct: 182 LASGSGYDVMIVDTAGRLGVDEELMAQARSI------RDEVQPDEVLFVLDAMIGQDAVR 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F      TG ++TK+DG ARGG  + +     +PV F   GEG++D E F A   +
Sbjct: 236 TARAFQEGVDFTGAVLTKLDGDARGGAALSVRGVTGVPVLFASTGEGLDDFERFHADRMA 295

Query: 308 AVITGCLDY 316
           + I    D 
Sbjct: 296 SRILDMGDL 304


>gi|18978103|ref|NP_579460.1| signal recognition particle protein Srp54 [Pyrococcus furiosus DSM
           3638]
 gi|23822176|sp|Q8U070|SRP54_PYRFU RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|211939182|pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
           The Ribonucleic Core Of The Signal Recognition Particle
           From The Archaeon Pyrococcus Furiosus.
 gi|211939183|pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
           The Ribonucleic Core Of The Signal Recognition Particle
           From The Archaeon Pyrococcus Furiosus.
 gi|18893898|gb|AAL81855.1| signal recognition particle protein srp54 [Pyrococcus furiosus DSM
           3638]
          Length = 443

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 149/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L   +  I  +  +D+ + +EL    +  LI++D+ V +  ++  E+  +   
Sbjct: 3   LDNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALE 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +         + ++  V E + K L   +KP   +   +P ++L+VG+ G GKTT + KL
Sbjct: 63  EKPPAGISKKEHIIKIVYEELTKFLGTEAKPI--EIKEKPTILLMVGIQGSGKTTTVAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G KV +   DT+R  A  QL+   DR   +   +    DA  LA E     ++
Sbjct: 121 ARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VD++I+DTAGR   +  L+  + ++  V+       PH V+ V+D T GQ A  Q   
Sbjct: 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIH------PHEVILVIDGTIGQQAYNQALA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG+A+GGG +  V     P+ F+G GE I+D+EPF    F + + 
Sbjct: 235 FKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GLGD 298


>gi|171463017|ref|YP_001797130.1| signal recognition particle protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192555|gb|ACB43516.1| signal recognition particle protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 460

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 151/308 (49%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V + ++E++  K   
Sbjct: 2   LENLTDRLSRVVKTMRGQARLTEANTAKMLREIRLALLEADVALPVVKSLLEQIKFKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKML---MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V   + +++      S   N   +  P VIL+ G+ G GKTT +
Sbjct: 62  EEVVGSLSPGQALVGVVQRELAQVMQSDTNQSGELNL-ATQPPAVILMAGLQGAGKTTSV 120

Query: 129 GKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +   K +   + D +R AAI+QL+    +  A+F  S+I      +A  A  
Sbjct: 121 GKLAKWLQEKKKKKVLTVSCDVYRPAAIEQLETVTKQVGAEFFPSDISQKPNDIALAALD 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DV+++DTAGRL  +  LM  I  +   L       P   L V+DA  GQ+A+ 
Sbjct: 181 WARHHYFDVVLVDTAGRLGIDEALMQEIKTLHSSLN------PIETLFVVDAMLGQDAVN 234

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + FH     TG+I+TK+DG +RGG  + +     +P+ F+GV E ++ LE F A+  +
Sbjct: 235 TAKAFHEALPLTGVILTKLDGDSRGGAALSVRQITGVPLKFIGVAEKMDGLEAFDAERMA 294

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 295 NRILGMGD 302


>gi|88608763|ref|YP_506428.1| signal recognition particle-docking protein FtsY [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600932|gb|ABD46400.1| signal recognition particle-docking protein FtsY [Neorickettsia
           sennetsu str. Miyayama]
          Length = 309

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 122/302 (40%), Positives = 181/302 (59%), Gaps = 2/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            S    +      +   L  GI +I +  ++ +   E+LE+LLI +DIG  V ++I++ +
Sbjct: 3   KSVFSSIRNSITKSRDYLSSGIDNIFAKEKISESTIEQLEELLISADIGPTVTERIIKTV 62

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              +     S+++V     E + K+L P SK   +  +  P VI+  GVNG GKTT IGK
Sbjct: 63  KKIKVKDGESLEQVKSITREEMKKVLDPTSKKLIFPQTG-PQVIVFCGVNGNGKTTTIGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K       VM+AA D FR+AAI+QL+ WA+R SA F  SE   +A+  AY+A ++A 
Sbjct: 122 LAYKFIQENKTVMIAACDLFRAAAIEQLRFWAERASATFFSSETSKNASGTAYKALEKAL 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             KVDVLI+DT+GRLH  + LM  + K+ RVL +L P AP+ V+  LDA+TGQNAL QV+
Sbjct: 182 EDKVDVLIVDTSGRLHTQNDLMEELKKICRVLSKLMPSAPNEVILALDASTGQNALNQVQ 241

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH-KIPVYFLGVGEGINDLEPFVAKDFSAV 309
           +F      TGL++TK+DGT++GG ++ I   +  + +YF+G GE I DLE F   +F   
Sbjct: 242 VFKDAVNLTGLVVTKLDGTSKGGVIVAIAERYPNLGIYFVGTGEKITDLEEFSPSEFVDA 301

Query: 310 IT 311
           + 
Sbjct: 302 LL 303


>gi|323359703|ref|YP_004226099.1| signal recognition particle GTPase [Microbacterium testaceum
           StLB037]
 gi|323276074|dbj|BAJ76219.1| signal recognition particle GTPase [Microbacterium testaceum
           StLB037]
          Length = 514

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 150/307 (48%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L E   ++    +L     DG   E+   L+ +D+ + V ++    +  +   
Sbjct: 4   FGTLSDRLTETFRNLRKKGQLTPADVDGTVREIRRALLDADVALPVVKEFTAAVRERALG 63

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q+V+  V++ +  +L    +   +   + P VI++ G+ G GKTT  GKL
Sbjct: 64  DEVNRALNPAQQVVQIVNDELIGILGGKQRRLQF-AKNPPTVIMLAGLQGSGKTTFAGKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +K +   G   +L A D  R  A++QL++ A+R  A     E G+   D   +A +    
Sbjct: 123 AKMLEKDGHTPLLVACDLQRPNAVNQLQVVAERAGAAIYAPEPGNGVGDPVKVARDGVAY 182

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A  ++ D++IIDTAGRL  ++ LM     +    +      P  VL V+DA  GQ+A+  
Sbjct: 183 ATRQQHDIVIIDTAGRLGVDAELMKQAADIRTATQ------PDEVLFVIDAMIGQDAVNT 236

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG++++K+DG ARGG  + +      P+ F   GEG++D+EPF     ++
Sbjct: 237 AKAFQDGVDFTGVVLSKLDGDARGGAALSVASVTGRPIIFASTGEGLDDVEPFHPDRMAS 296

Query: 309 VITGCLD 315
            I    D
Sbjct: 297 RILDLGD 303


>gi|302537184|ref|ZP_07289526.1| signal recognition particle protein [Streptomyces sp. C]
 gi|302446079|gb|EFL17895.1| signal recognition particle protein [Streptomyces sp. C]
          Length = 524

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 143/308 (46%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL     D    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDTLSDRLSATFKSLRGKGRLSEQDIDAAAREIRIALLEADVALPVVRSFISNVKERARG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+VL  V++ +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSKALNPGQQVLKIVNDELVAILGGETRRLRF-AKTAPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              +   G   +L A D  R  A++QL + A+R        + G+   D   +A ++ + 
Sbjct: 121 GFWLKGQGHTPLLVACDLQRPNAVNQLSVVAERAGVAVYAPQPGNGVGDPVQVAKDSVEY 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK+ D++I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 ARAKQHDIVIVDTAGRLGIDQELMQQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       + F   GE ++D + F     + 
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGKQIMFASNGEKLDDFDAFHPDRMAG 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|42523591|ref|NP_968971.1| signal recognition particle protein [Bdellovibrio bacteriovorus
           HD100]
 gi|39575797|emb|CAE79964.1| signal recognition particle protein [Bdellovibrio bacteriovorus
           HD100]
          Length = 450

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S K+   +  +    ++ +     V +E+   L+ +D+   V +  ++++  K   
Sbjct: 9   FENLSDKIMTSLKKVRGQHKISEANIEEVIKEIRLSLLEADVNFKVVKTFIDKVKEKALG 68

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q  +  V + +  +L   +   N      P VI +VG+ G GKTT   KL
Sbjct: 69  QDVLTNVNPGQMFVKIVHDELVNVLGGGAVDIN--VRENPSVIFLVGLQGAGKTTSAAKL 126

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           S  +      K  L   D +R AAIDQL++   + +     +++G     +  +A + A+
Sbjct: 127 SLYIRQKLNKKPGLVPADIYRPAAIDQLQVLGKQNNIPTFPTQVGMKPEEILEKAKQWAR 186

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              V+V+I+DTAGRL  +  LM  +G++  +        P  +L V DA  GQ ++   E
Sbjct: 187 DNMVEVVIVDTAGRLQIDEDLMGELGRLKEIWT------PQEILLVADAMLGQQSVNVAE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TGL++TK+DG ARGG  + I     IP+ FLG+GE +  LE F     +  I
Sbjct: 241 GFHKRLNLTGLVLTKVDGDARGGAALSIREVTGIPIKFLGIGEKVTALEVFHPDRLAGRI 300

Query: 311 TGCLD 315
               D
Sbjct: 301 LDMGD 305


>gi|118591424|ref|ZP_01548822.1| signal recognition particle protein [Stappia aggregata IAM 12614]
 gi|118436096|gb|EAV42739.1| signal recognition particle protein [Stappia aggregata IAM 12614]
          Length = 513

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   LI +D+ + + +   +++  +   
Sbjct: 2   FESLSDRLSGIFDKLTGRGALSENDVNEALREIRRALIEADVALPIVRSFTDKVRNRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + + +ML   + P + + +  P  I++VG+ G GKTT   K+
Sbjct: 62  AEVVKSVTPGQMVVKIVHDQLVEMLGEEAHPIDLN-APAPVAIMMVGLQGSGKTTTTAKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++M      KV++A+ DT R AA +QLK+  ++   D +    G     +A  A   A+
Sbjct: 121 ARRMTQRDKRKVLMASLDTRRPAAQEQLKVLGEQNDIDTLPIVAGQGPVEIAKRAMSAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR+H +  LM  + ++           PH +L V D+ TGQ+A+   +
Sbjct: 181 LGGYDVVMLDTAGRIHIDEPLMVEMAEVKAA------AQPHEILLVADSLTGQDAVNLAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+ +T+MDG  RGG  + +      PV  +G GE  + LE F  +  +  I
Sbjct: 235 SFDERVGITGIALTRMDGDGRGGAALSMQAVTGKPVKLIGTGEKSDALEDFHPRRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|226356328|ref|YP_002786068.1| cell division protein FtsY, signal recognition particle-docking
           protein FtsY [Deinococcus deserti VCD115]
 gi|226318318|gb|ACO46314.1| putative Cell division protein ftsY, Signal recognition
           particle-docking protein FtsY [Deinococcus deserti
           VCD115]
          Length = 318

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 174/315 (55%), Gaps = 18/315 (5%)

Query: 11  LSWIRKLTKGFASTSLKLKEG-------ITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +SW+ +L  G + T  ++ E        + D+ ++R       E+LE  LI +D+G A  
Sbjct: 1   MSWLERLRDGLSKTRKQINETAGFLGNDVRDVFTNRL---ETIEDLEYALIAADVGRAAT 57

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-------FSHRPHVILV 116
           ++I+E++ +    K++    +   V +L         +   +           + HV++V
Sbjct: 58  EEILEDVRSSE-GKNLQQALMDALVLQLEPDARRAEFRKLGFAPDVSRSRIDPKGHVVMV 116

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +GVNGVGKTT I KL +     G  VM AAGDTFR+AA  QL +W DR     V    G 
Sbjct: 117 IGVNGVGKTTTIAKLGQYYMTRGKSVMFAAGDTFRAAAGAQLGVWGDRLGIPVVQGIDGG 176

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+A++      A+  D+L +DTAGRLHN   LM  + K+ RV+ + DP  P  V  V
Sbjct: 177 DPAAVAFDGASARAARGTDLLFVDTAGRLHNKHNLMEELKKVRRVIDKADPGEPAEVWLV 236

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA TGQN L+Q + FH     TG+I+TK+DGTA+GG LIPIV    +P+ F+GVGE   
Sbjct: 237 LDAVTGQNGLQQAKKFHEATPLTGVIVTKLDGTAKGGILIPIVRELGVPIKFIGVGEQAG 296

Query: 297 DLEPFVAKDFSAVIT 311
           DL+PF +++F   + 
Sbjct: 297 DLQPFDSQEFVRALF 311


>gi|282861368|ref|ZP_06270433.1| signal recognition particle protein [Streptomyces sp. ACTE]
 gi|282564026|gb|EFB69563.1| signal recognition particle protein [Streptomyces sp. ACTE]
          Length = 515

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 145/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDTLSDRLSATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIANVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSQALNPAQQVVKIVNEELVGILGGETRRLRF-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              +   G   +L A D  R  A++QL + ADR        E G+   D   +A ++ + 
Sbjct: 121 GLWLKGQGHSPLLVACDLQRPNAVNQLSVVADRAGVAVYAPEPGNGVGDPVKVAQDSIEY 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  D++I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 AKAKVHDIVIVDTAGRLGIDEELMRQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       + F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGKQIMFASNGEKLEDFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|327404872|ref|YP_004345710.1| signal recognition particle subunit FFH/SRP54 (srp54) [Fluviicola
           taffensis DSM 16823]
 gi|327320380|gb|AEA44872.1| signal recognition particle subunit FFH/SRP54 (srp54) [Fluviicola
           taffensis DSM 16823]
          Length = 449

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + K +     +    ++ +       +E+   L+ +D+    A+     +  K   
Sbjct: 2   FDNLTDKFERAFKVLKGQGQITEINVAETLKEVRRALLDADVNFKTAKDFTVRVKDKAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++    E + +++           +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  ENVLTAISPSQLMIKICHEELVELMGGNESEIQIQGT--PGVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAIDQL +  ++   +   ++   D   +A +A   A+
Sbjct: 120 ANYLQTKKNKKPLLVACDVYRPAAIDQLHVLGEQLGIEVYSNKEEKDPVKIATDAVIYAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +K  +V+I+DTAGRL  +  +M  I ++ + +       P   L V+D+ TGQ+A+   +
Sbjct: 180 SKGFNVVIVDTAGRLAVDEAMMDEIARVKKAIN------PTETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F  K  +  I
Sbjct: 234 AFNDRINFDGVVLTKLDGDTRGGAALSIKSIVDKPIKFVGTGEKMDALDVFYPKRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|114705073|ref|ZP_01437981.1| signal recognition particle protein [Fulvimarina pelagi HTCC2506]
 gi|114539858|gb|EAU42978.1| signal recognition particle protein [Fulvimarina pelagi HTCC2506]
          Length = 527

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   +  +     L +        E+   L+ +D+ + V ++  E +  K   
Sbjct: 2   FDSLQDRLGSILNGLTGRGALSEKDVSAALREVRRALLEADVALEVVREFTERVRAKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + + + L       + + +  P  +++VG+ G GKTT  GK+
Sbjct: 62  AEVLKSIKPGQMVVKIVHDELIETLGSEGVSIDLN-APAPVTLMMVGLQGSGKTTTTGKI 120

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ D    KV++A+ DT R AA +QLK+  ++T  D +    G     +A  A + A+
Sbjct: 121 AKRLKDKQRKKVLMASLDTRRPAAQEQLKVLGEQTQVDTLPIIAGQGPVEIAVRAEQAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  +    K      PH +L V D+ TGQ+A+    
Sbjct: 181 LGGYDVVILDTAGRTHIDEPLMVEMANIKVRTK------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +GVGE ++ LE F     +  I
Sbjct: 235 SFDERVGVTGIVLTRVDGDGRGGAALSMRAVTGKPIKLIGVGEKMDALEDFHPSRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|23098984|ref|NP_692450.1| signal recognition particle [Oceanobacillus iheyensis HTE831]
 gi|22777212|dbj|BAC13485.1| signal recognition particle (docking protein) [Oceanobacillus
           iheyensis HTE831]
          Length = 333

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 126/316 (39%), Positives = 182/316 (57%), Gaps = 5/316 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           K  +E+     K  +G   T       + D+I+  R++D+   EELE++LI +D+GV   
Sbjct: 12  KQDNETKQVTEKYQEGMKKTRNSFSGKLNDLIARYRKVDEDFFEELEEVLITADVGVTTV 71

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF--SHRPHVILVVGV 119
             +VEEL  +   +++     + DV   +L+        +             VILVVGV
Sbjct: 72  MDLVEELKMEVKRQNIKDSEQIKDVISEKLVEIYYGDEDESIEKLKIDGDGLKVILVVGV 131

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKL+ ++   G  V+LAAGDTFR+ AI+QL++W +R     +    GSD A
Sbjct: 132 NGAGKTTSIGKLAHQLKQEGKNVVLAAGDTFRAGAIEQLEVWGERADVPVIKQSEGSDPA 191

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ Y+  + A+++  DVLI DTAGRL N   LM  + K+ RV++R  P APH VL VLDA
Sbjct: 192 AVIYDGVQAAKSRNADVLICDTAGRLQNKVNLMNELSKVKRVIEREIPDAPHEVLLVLDA 251

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q   F      TG+++TK+DGTA+GG ++ I    ++PV F+G+GE INDL+
Sbjct: 252 TTGQNALNQARTFSDATDVTGIVLTKLDGTAKGGIVLAIRNELQLPVKFVGLGEKINDLQ 311

Query: 300 PFVAKDFSAVITGCLD 315
            F A  F   +   +D
Sbjct: 312 QFDASAFVYGLFSDID 327


>gi|313632786|gb|EFR99746.1| signal recognition particle protein [Listeria seeligeri FSL N1-067]
          Length = 427

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 13/278 (4%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMP 98
            +  E+   L+ +D+   V ++ ++ +  +    DV       Q+V+  V E +  ++  
Sbjct: 7   EMMREVRLALLEADVNFKVVKQFIKTVSERAVGTDVMKSLTPGQQVIKIVQEELTNLMGG 66

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQ 157
                       P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI Q
Sbjct: 67  EESKIGT-ADRPPTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQ 125

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+    +                +A +A ++A+   +D +IIDTAGRLH +  LM  + +
Sbjct: 126 LETLGKQLDMPVFSLGDQVSPVEIAKQAIEKAKEDHLDYVIIDTAGRLHIDETLMDELKQ 185

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +  +        P  +L V+D+ TGQ+A+   E F+     TG+++TK+DG  RGG  + 
Sbjct: 186 VKEIAN------PTEILLVVDSMTGQDAVNVAESFNEQLEITGVVLTKLDGDTRGGAALS 239

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I      P+ F+  GE +  +E F     ++ I G  D
Sbjct: 240 IRSVTGKPIKFVATGEKMEAIETFHPDRMASRILGMGD 277


>gi|170695319|ref|ZP_02886465.1| signal recognition particle protein [Burkholderia graminis C4D1M]
 gi|170139719|gb|EDT07901.1| signal recognition particle protein [Burkholderia graminis C4D1M]
          Length = 455

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 145/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + ++   +  +    RL +     +  E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   LDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKGKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V   +  ++    +    + +     P VIL+ G+ G GKTT +
Sbjct: 62  EEVISSLSPGQALVGVVQRELTAVIGGDYEGKASELNLAVTPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +    KV+  + D +R AAI QLK   ++  ADF  SE       +A  A  
Sbjct: 122 GKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADFFPSEPDQKPVDIARAAVD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRL  +  +M  I  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 WAKRHYHDVLIVDTAGRLGIDEAMMQEITALHTTLKPA------ETLFVVDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+++TK+DG +RGG  + +      P+ F+GV E ++ LE F     +
Sbjct: 236 TAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGRPIKFVGVAEKLDGLEVFYPDRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|42519391|ref|NP_965321.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii
           NCC 533]
 gi|41583679|gb|AAS09287.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii
           NCC 533]
          Length = 443

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 171/299 (57%), Gaps = 6/299 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            +  KG   T+      +    +  R +D+   ++LEDLLI SD+G   A+++ + L  +
Sbjct: 137 ERYDKGLEKTNHSFGARLNAFFAKFRTVDENFFDDLEDLLIESDVGFETAEELTDSLRDE 196

Query: 74  RYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              ++        Q ++  + ++  K           D S +P+V L VGVNG GKTT I
Sbjct: 197 AKLQNAKSHDALKQVIVEKLVDIYDKGGEGEDSKLADDPSAKPNVYLFVGVNGAGKTTTI 256

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K++ D+G  VM+ A DTFR+ A++QL  W  R   + +     +D A++ Y   K+
Sbjct: 257 GKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVEVITGPEKADPASVVYNGVKK 316

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ + +D L++DTAGRL N   LM+ + K+ R +K++ P  P+ VL VLD +TGQNAL Q
Sbjct: 317 AKERGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPDQPNEVLLVLDGSTGQNALLQ 376

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE ++DL  F A+ F+
Sbjct: 377 AKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKLVGLGEKVDDLANFDAEKFA 435


>gi|34581201|ref|ZP_00142681.1| cell division protein ftsY [Rickettsia sibirica 246]
 gi|28262586|gb|EAA26090.1| cell division protein ftsY [Rickettsia sibirica 246]
          Length = 303

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 129/303 (42%), Positives = 190/303 (62%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD G  EELE+LLI SD+ V V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAGTLEELEELLISSDMSVLVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L   + PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAKLIEQQLSKSAIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AA++QL  WADR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYHGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+DA TGQN   QVE
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVIDAITGQNTYNQVE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  +
Sbjct: 241 HFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARNL 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|218283558|ref|ZP_03489548.1| hypothetical protein EUBIFOR_02138 [Eubacterium biforme DSM 3989]
 gi|218215826|gb|EEC89364.1| hypothetical protein EUBIFOR_02138 [Eubacterium biforme DSM 3989]
          Length = 472

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L +   +I    +L +     + +E+   L+ +D+   V +  VE +  K  
Sbjct: 2   AFESLSERLNKAFKNISGQGKLTEKNMNDMLKEVRMSLLEADVNYDVVKSFVENVKEKAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V + +  +L       ++       ++++VG+ G GKTT   K
Sbjct: 62  GQEVLDSLNPGQMVVKIVHDELQVLLGEEDARIHFK-KQGMTMVMMVGLQGTGKTTASAK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++    +    +V+L A D  R AAI+QL+        +       + A   A +A   A
Sbjct: 121 IANYCKNKLARRVLLVACDVVRPAAIEQLQTLGKSIDVEVFTCGPETSAVETAKQALTYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + ++ D++I DTAGRLH +  LM  + +M  ++       P  +L  +DA TGQ+ +   
Sbjct: 181 KDRQKDLVIFDTAGRLHIDEALMHELQQMKELV------VPDEILLTVDAMTGQDIVTVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TGLI+TKMDG ARGGGL+ +     +PV F+  GE ++DLE F     +  
Sbjct: 235 KEFNEQLSVTGLIVTKMDGDARGGGLLSVRSITNVPVLFVSNGEKVDDLEEFHPDRMADR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|153008411|ref|YP_001369626.1| signal recognition particle protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151560299|gb|ABS13797.1| signal recognition particle protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 523

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   +  +     L +        E+   LI +D+ + V +   + +  K   
Sbjct: 2   FESLQERLGSILNGLTGRGALSEADVAAALREVRRALIEADVSLEVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       + + +  P VI++VG+ G GKTT  GK+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELIEMLGTEGVAIDLN-APAPVVIMMVGLQGSGKTTTTGKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      KV++A+ DT R AA +QL+    +TS D +    G     +A  A + A+
Sbjct: 121 AKRLTERQRKKVLMASLDTRRPAAQEQLRQLGIQTSVDTLPIIAGQSPVEIAKRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+  +  GE ++ LE F  K  +  I
Sbjct: 235 NFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLIATGEKMDALEEFYPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|269468630|gb|EEZ80274.1| signal recognition particle, subunit SRP54 [uncultured SUP05
           cluster bacterium]
          Length = 474

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L      +    +L +  ++E + ++   L+ +D+ + V +  ++ +  K   
Sbjct: 2   FDNLTDRLSNSFKVLQGKHKLSESNIKEAIREVRRSLLEADVALEVIKVFLDRVQAKASG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q  +  V   +  ++   ++  +   +  P V++V G+ G GKTT I KL
Sbjct: 62  LKVGEGLNPSQAFIKLVEIELTDIIGGENESLDLK-TQPPAVVMVAGLQGAGKTTSIAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ +      KV++ + D +R AAI QL++ A +   DF  S I      +   A K AQ
Sbjct: 121 ARYLKERENKKVLVVSADVYRPAAIKQLEVLAGQVGVDFYPSTINDKPEKIVASAKKHAQ 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGRLH +  +M  I  + + +       P   L V+D+ TGQ+A    +
Sbjct: 181 KQFFDVLLVDTAGRLHVDEAMMGEIKALQKKVN------PIETLFVVDSMTGQDAAHTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG ARGG  + +      P+ FLGVGE I+ LEPF      + +
Sbjct: 235 AFADALPLTGVILTKTDGDARGGAALSVRHITGKPIKFLGVGEKIDALEPFHPDRVVSRL 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|256026607|ref|ZP_05440441.1| Signal recognition particle receptor FtsY [Fusobacterium sp. D11]
 gi|289764608|ref|ZP_06523986.1| signal recognition particle receptor FtsY [Fusobacterium sp. D11]
 gi|289716163|gb|EFD80175.1| signal recognition particle receptor FtsY [Fusobacterium sp. D11]
          Length = 328

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 189/313 (60%), Gaps = 7/313 (2%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIG 59
           +  +K  ++ ++  ++LT     +       + +I +S+ ++DD + EELEDLL++SD+G
Sbjct: 20  IDKEKEENQKVNISQRLT----KSKEGFFSKLKNIFTSKSKVDDSIYEELEDLLLQSDVG 75

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           + +   ++ +L  +  +  +     +Y+V  +L+ + L+           ++ +VIL+VG
Sbjct: 76  LNMTTNLINQLEKEVKSNKIDNTEEVYEVLKKLMSEFLLSQDSKIYLK-DNKINVILIVG 134

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K    G KV+L AGDTFR+AA++QL+ WA R   D V    G+D 
Sbjct: 135 VNGVGKTTTIGKLALKYKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADP 194

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+   +A++ K DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D
Sbjct: 195 ASVVYDTLSRAESTKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQQYESLLVID 254

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            TTGQN L Q + F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL
Sbjct: 255 GTTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIEDL 314

Query: 299 EPFVAKDFSAVIT 311
             F AKDF   I 
Sbjct: 315 IEFNAKDFVEAIF 327


>gi|319764321|ref|YP_004128258.1| signal recognition particle protein [Alicycliphilus denitrificans
           BC]
 gi|317118882|gb|ADV01371.1| signal recognition particle protein [Alicycliphilus denitrificans
           BC]
          Length = 459

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 146/304 (48%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ + KL   + ++    R+ +     +  E+   L+ +D+ + V +  +  +  K   +
Sbjct: 3   SALTEKLTRLVKEMRGQARITESNVQDMLREVRMALLEADVALPVVRDFIARVKEKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q ++  V++ +   +       N   +  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVLGSLKPGQALVGIVNQELAATMGEGVADINL-AAQPPAVILMAGLQGAGKTTTTAKLA 121

Query: 133 KKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +    KV+  +GD +R AAI+QLK    +  A++  S        +A  A   A+ 
Sbjct: 122 KHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAGAEWFPSSPDQKPRDIALAALDYARK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  + +LM  I  +  VL       P   L V+DA  GQ+A+   + 
Sbjct: 182 HYFDVLLVDTAGRLAIDELLMQEIKDLHAVLN------PVETLFVVDAMQGQDAVNTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG +RGG  + +      P+ F GV E I+ LE F A+  +  + 
Sbjct: 236 FKEALPLTGIVLTKLDGDSRGGAALSVRAITGAPIKFAGVSEKIDGLEVFDAQRHAGRVL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|157413847|ref|YP_001484713.1| signal recognition particle protein [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388422|gb|ABV51127.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9215]
          Length = 492

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++ +        +++  L+ +D+ ++V +  + E+  K   
Sbjct: 2   FDELSSRFEDAVKGLRGEAKISENNINDALNQVKRALLDADVSLSVVKDFISEVKEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V++ +  ++   + P N +  + P VIL+ G+ G GKTT  GKL
Sbjct: 62  EEVVRGVNPGQKFIEVVNKELINIMGNENSPLNEN-KNSPTVILMAGLQGAGKTTATGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQ 190
              + +   KV+L A D +R AA++QLK    +   +     E       +A +A   A+
Sbjct: 121 GLYLKEKDKKVLLVAADIYRPAAVEQLKTLGSQYDLEVFSAKEKNCKPEVIAKDALNFAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               + +IIDTAGRL  +  +M+ + ++  V        P  VL V+D+  GQ A    +
Sbjct: 181 ENDFNSIIIDTAGRLQIDDSMMSEMVRIKEVSN------PDEVLLVVDSMIGQEAADLTK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G +G I+TK+DG +RGG  + I      P+ F+GVGE I  L+PF  +  ++ I
Sbjct: 235 SFHEKVGISGAILTKLDGDSRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|169350200|ref|ZP_02867138.1| hypothetical protein CLOSPI_00944 [Clostridium spiroforme DSM 1552]
 gi|169292983|gb|EDS75116.1| hypothetical protein CLOSPI_00944 [Clostridium spiroforme DSM 1552]
          Length = 327

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 189/312 (60%), Gaps = 9/312 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K   +S     K   G   +++   + I ++ +  R +++   EELE++LI SD+GV+
Sbjct: 8   KEKFVGKSAKQNEKYVAGLDRSNVTFSDRINELAARFREINEDYFEELENILIMSDVGVS 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-----PLSKPFNWDFSHRPHVILV 116
           +  KIV+E+  +   ++++  + + D+  ++ KM +      +        S    VIL+
Sbjct: 68  MVMKIVDEIKNEVRIQNITDPKQINDI--IVDKMFVIYANDSVMTTKINYASEGLTVILM 125

Query: 117 VGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VGVNG GKTT IGKL+ ++  D G KVM+AAGDTFR+ AIDQL +WADR   + V    G
Sbjct: 126 VGVNGAGKTTTIGKLANRIVQDEGKKVMVAAGDTFRAGAIDQLAVWADRVGVEIVKGREG 185

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D +A+ ++A KQA+ K VDVLI DTAGRL N   LM  + KM R++KR  P APH  L 
Sbjct: 186 GDPSAVVFDALKQAKEKNVDVLICDTAGRLQNKVNLMKELEKMNRIIKREVPDAPHETLL 245

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN + Q   F  +   TGL++TKMDGTA+GG ++ I     IPV F+G+GEG+
Sbjct: 246 VIDATTGQNGVSQAVEFSKITDITGLVLTKMDGTAKGGIVLSIKDQLNIPVKFIGLGEGV 305

Query: 296 NDLEPFVAKDFS 307
           +DL+ F    + 
Sbjct: 306 DDLQEFDLDQYI 317


>gi|317131324|ref|YP_004090638.1| signal recognition particle-docking protein FtsY [Ethanoligenens
           harbinense YUAN-3]
 gi|315469303|gb|ADU25907.1| signal recognition particle-docking protein FtsY [Ethanoligenens
           harbinense YUAN-3]
          Length = 312

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 122/302 (40%), Positives = 181/302 (59%), Gaps = 3/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    K+  G A T   +   +  +     ++D+ + EELED+L+ SD+GVA +  ++E+
Sbjct: 1   MGVFDKIRAGLAKTRASVAGRMGQVFHGRGKVDEELFEELEDVLVSSDVGVATSTYLIEK 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +   + +     + +  + +  M   L    +   +  P V+LV+GVNGVGKTT IG
Sbjct: 61  LRGRVKKEHIVDTDGVREALKAV--MTGELEGDVSLLLAPAPAVLLVIGVNGVGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ ++   G  V+L A DTFR+AAIDQL+IWA+R   D V  + G+D AA+ ++A +  
Sbjct: 119 KLAAQLKAEGKAVLLGAADTFRAAAIDQLEIWAERAGVDIVKQKEGADPAAVVFDAVQAG 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  DV+I DTAGRLHN   LM  + K+ RV+ R  P A    L VLDATTGQNA+ Q 
Sbjct: 179 KARGADVVICDTAGRLHNKKSLMDELSKISRVIDRELPGAARENLLVLDATTGQNAVNQA 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F   AG TG+I+TK+DGTARGG +  I     +PV ++GVGE I+DL+PF  + F   
Sbjct: 239 KQFKEAAGLTGIILTKLDGTARGGVVFAIRHELGVPVKYIGVGEQIDDLQPFDPRAFVDA 298

Query: 310 IT 311
           + 
Sbjct: 299 LF 300


>gi|294627001|ref|ZP_06705591.1| signal recognition particle protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598663|gb|EFF42810.1| signal recognition particle protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 458

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   +  +    RL ++ +RE + +    L+ +D+ + V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTMERLRGRGRLTEENIREAIREVRIALLEADVALPVVQALIERIKVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELTAVMGAAATDLNLNVPA-PAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QLK  A++    F  S+       +   A   A+
Sbjct: 121 AKHLKEKRKKKVMVVSADIYRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  ++ +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDAAMMDEIKALHAAVN------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+G GE  + L+ F     ++ I
Sbjct: 235 AFGEALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVFHPDRVASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|260494667|ref|ZP_05814797.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           3_1_33]
 gi|260197829|gb|EEW95346.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           3_1_33]
          Length = 328

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 189/313 (60%), Gaps = 7/313 (2%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIG 59
           +  +K  ++ ++  ++LT     +       + +I +S+ ++DD + EELEDLL++SD+G
Sbjct: 20  IDKEKEENQKVNISQRLT----KSKEGFFSKLKNIFTSKSKVDDSIYEELEDLLLQSDVG 75

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           + +   ++ +L  +  +  +     +Y+V  +L+ + L+           ++ +VIL+VG
Sbjct: 76  LNMTTNLINQLEKEVKSNKIDNTEEVYEVLKKLMSEFLLSQDSKIYLK-DNKINVILIVG 134

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K    G KV+L AGDTFR+AA++QL+ WA R   D V    G+D 
Sbjct: 135 VNGVGKTTTIGKLALKYKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADP 194

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+   +A++ K DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D
Sbjct: 195 ASVVYDTLSRAESTKADVVIIDTAGRLHNKTNLMRELEKINNIIKKKIGEQQYESLLVID 254

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            TTGQN L Q + F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL
Sbjct: 255 GTTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIEDL 314

Query: 299 EPFVAKDFSAVIT 311
             F AKDF   I 
Sbjct: 315 IEFNAKDFVEAIF 327


>gi|240851341|ref|YP_002972744.1| signal recognition particle protein [Bartonella grahamii as4aup]
 gi|240268464|gb|ACS52052.1| signal recognition particle protein [Bartonella grahamii as4aup]
          Length = 522

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 141/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   ++ +     L D        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FESLQERLGSILSHLTGRGALSDQDVVEALREIRRALLEADVALDVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + +  +L   S   + + +  P VI+++G+ G GKTT   KL
Sbjct: 62  AEIVKSIKPGQMVVKIVHDELVHILGNESVLSDLN-APAPVVIMMIGLQGSGKTTTTAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+ +D   K + +A+ DT R AA +QL+   ++     +    G     +A  A + A+
Sbjct: 121 AKRFTDKHHKKVLMASLDTRRPAAQEQLRQLGEQAKLASLPIIAGQLPVDIASRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGR H +  LM  + ++           PH ++ V D+ TGQ+A+    
Sbjct: 181 LGGYDVLLLDTAGRNHIDEALMLELAEIKAC------SLPHEIMLVADSLTGQDAVHLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+I+T+MD   RGG  + +      P+  +G GE I+ LE F     +  I
Sbjct: 235 SFDERVGITGIILTRMDSDGRGGAALSMRAVTGKPIKAIGTGEKIDALEEFHPSRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|254525556|ref|ZP_05137608.1| signal recognition particle protein [Prochlorococcus marinus str.
           MIT 9202]
 gi|221536980|gb|EEE39433.1| signal recognition particle protein [Prochlorococcus marinus str.
           MIT 9202]
          Length = 486

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++ +        +++  L+ +D+ ++V +  + E+  K   
Sbjct: 2   FDELSSRFEDAVKGLRGEAKISENNINDALNQVKRALLDADVSLSVVKDFISEVKEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V++ +  ++   + P N +  + P VIL+ G+ G GKTT  GKL
Sbjct: 62  EEVVRGVNPGQKFIEVVNKELINIMGNENSPLNEN-ENSPTVILMAGLQGAGKTTATGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQ 190
              +     KV+L A D +R AA++QLK    +   +     E       +A +A   A+
Sbjct: 121 GLYLKAKDKKVLLVAADIYRPAAVEQLKTLGSQYDLEVFSAKEKNCKPEVIAKDALNFAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               + +IIDTAGRL  +  +M+ + ++  V        P  VL V+D+  GQ A    +
Sbjct: 181 ENDFNSIIIDTAGRLQIDDSMMSEMVRIKEVSN------PDEVLLVVDSMIGQEAADLTK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G +G I+TK+DG +RGG  + I      P+ F+GVGE I  L+PF  +  ++ I
Sbjct: 235 SFHEKVGISGAILTKLDGDSRGGAALSIRKISGKPIKFIGVGEKIEALQPFHPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|294055108|ref|YP_003548766.1| signal recognition particle-docking protein FtsY [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614441|gb|ADE54596.1| signal recognition particle-docking protein FtsY [Coraliomargarita
           akajimensis DSM 45221]
          Length = 310

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 108/303 (35%), Positives = 175/303 (57%), Gaps = 2/303 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S  RK   G    +    +    + S  +LD    +ELE+ L  +D GV   ++I++E+ 
Sbjct: 3   SLFRKFKDGLKKQTPTFHKAFDKVFSGAKLDQDALDELEEALYTADFGVETVEEIIDEIK 62

Query: 72  -TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              +  KD+  +      + ++ ++L            H+P VI ++GVNG GKTT   K
Sbjct: 63  VAYKADKDIRGEDAARIGATVLARVLEGAEGRVEVG-KHKPEVIALIGVNGAGKTTTSAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L     + G  ++L A DTFR+AA +Q++ WA R   D V S+ G+D+AA+A++A+  A 
Sbjct: 122 LGHMYQNDGYSILLGACDTFRAAANEQIQHWAKRLKIDIVSSQHGADSAAVAFDAYAAAV 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  D++I+DTAGRLH  + LM  + K  RV+K+ D  APH    V+D + G N++ Q  
Sbjct: 182 SRGRDIVILDTAGRLHTKNNLMKELEKFQRVIKKQDESAPHHAWLVVDGSLGSNSIEQAR 241

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+     +GLI+TK+DGT+RGG L+ I    K+P+YF+G+GE  +DL+PF A++++  I
Sbjct: 242 VFNESFPLSGLIITKLDGTSRGGALVGIYRELKLPIYFVGLGEQPDDLQPFSAENYANAI 301

Query: 311 TGC 313
            G 
Sbjct: 302 FGI 304


>gi|307284873|ref|ZP_07565029.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0860]
 gi|306503132|gb|EFM72389.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0860]
 gi|315167202|gb|EFU11219.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX1341]
          Length = 442

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 254 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 313

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 314 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 374 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 431


>gi|50955120|ref|YP_062408.1| signal recognition particle, subunit SRP54 [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951602|gb|AAT89303.1| signal recognition particle, subunit SRP54 [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 523

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 148/307 (48%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +   ++ +  +L     DG   E+   L+ +D+ + V ++    +  +   
Sbjct: 4   FGTLSDRLADTFKNLRTKGKLSPSDVDGTVREIRRALLDADVALDVVKEFTGRVRERALN 63

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV+      Q+V+  V+E +  +L    +   +     P VI++ G+ G GKTT+ GKL
Sbjct: 64  DDVNKALNPAQQVVQIVNEELIGILGGEQRRLQF-AKKPPTVIMLAGLQGAGKTTLAGKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            K +   G   +L A D  R  A++QL+I  ++        E G+   +   +A +A   
Sbjct: 123 GKWLVKDGHTPILVAADLQRPNAVNQLQIVGEQAGVPVYAPEPGNGVGNPVKVAKDALTF 182

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K+ D ++IDTAGRL  ++ LM     + +         P  VL V+DA  GQ+A+  
Sbjct: 183 AETKQYDTVVIDTAGRLGVDAELMKQAADIRKATD------PDEVLFVIDAMIGQDAVAT 236

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TG++++K+DG ARGG  + +      P+ F   GEG++D EPF     ++
Sbjct: 237 AKAFQDGVDFTGVVLSKLDGDARGGAALSVASITGRPIIFASTGEGLDDFEPFHPDRMAS 296

Query: 309 VITGCLD 315
            I    D
Sbjct: 297 RILDLGD 303


>gi|262282629|ref|ZP_06060397.1| cell division protein FtsY [Streptococcus sp. 2_1_36FAA]
 gi|262261920|gb|EEY80618.1| cell division protein FtsY [Streptococcus sp. 2_1_36FAA]
          Length = 438

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 167/300 (55%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  + EEL  +
Sbjct: 135 EKYDRSLKKTRTGFGAKLNAFFANFRTVDEDFFEDLEELLITSDVGVQVASNLAEELRYE 194

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+             +F     V+L VGVNGVGKTT IGKL
Sbjct: 195 ARLENAKKPDALRKVIIEKLVDIYEKDGRYNEKINFQDGLTVMLFVGVNGVGKTTSIGKL 254

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G KVML A DTFR+ A+ QL  W  R     V      D A++ ++  ++AQA
Sbjct: 255 AYKYKQEGKKVMLVAADTFRAGAVAQLAEWGKRVDVPVVTGPEKCDPASVVFDGIERAQA 314

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+L+IDTAGRL N   LMA + K+ R++KR++P APH     LDA+TGQNAL Q + 
Sbjct: 315 ENIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVNPDAPHETFLALDASTGQNALVQAKE 374

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   + 
Sbjct: 375 FSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSENFMRGLL 434


>gi|159185333|ref|NP_355632.2| signal recognition particle protein [Agrobacterium tumefaciens str.
           C58]
 gi|159140588|gb|AAK88417.2| signal recognition particle protein [Agrobacterium tumefaciens str.
           C58]
          Length = 523

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FENLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + + +ML       +   +  P VI++VG+ G GKTT  GK+
Sbjct: 62  AAVLKSIKPGQMVVKIVHDELVEMLGTEGVSIDLHAAA-PVVIMMVGLQGSGKTTTTGKI 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+++D    KV++A+ DT R AA +QL+    +T  D +    G     +A  A + A+
Sbjct: 121 AKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGGHDVVILDTAGRTHIDEPLMLEMADIKK------KSNPHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +G+GE +N+L+ F  +  +  I
Sbjct: 235 NFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|218261279|ref|ZP_03476151.1| hypothetical protein PRABACTJOHN_01817 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224125|gb|EEC96775.1| hypothetical protein PRABACTJOHN_01817 [Parabacteroides johnsonii
           DSM 18315]
          Length = 441

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    ++ +       +++   L+ +D+   VA+   + + TK   
Sbjct: 2   FENLSERLDRSFKLLKGEGKITEINVAETLKDVRKALLDADVNYKVAKSFTDTVKTKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   + D    P +IL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTSVKPSQLMVKIVHDELADLMGGTAT--DLDLKGSPAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L AA D +R AAI+QL++  ++            +   +A  A ++A+
Sbjct: 120 ANLLKTKKNKKPLLAACDVYRPAAIEQLRVVGEQVGVPVYMELENKNPVEIAMNAIREAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I  +   ++      P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGNDVVIVDTAGRLAIDEQMMKEIAAIKSAIQ------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F  +  +  I
Sbjct: 234 EFNERLDFDGVVLTKLDGDTRGGAALSIRTVVDKPIKFVGTGEKMDALDIFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|209883424|ref|YP_002287281.1| signal recognition particle protein [Oligotropha carboxidovorans
           OM5]
 gi|209871620|gb|ACI91416.1| signal recognition particle protein [Oligotropha carboxidovorans
           OM5]
          Length = 515

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 138/305 (45%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL   +  +     L +   +    E+   L+ +D+ + V ++  +++  +   
Sbjct: 2   FDNLSEKLGGILDKLTRRGALSEADVDAAMREVRRALLEADVALDVVRQFTDKVREQAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + +   L    +  + + +  P  I++VG+ G GKTT   KL
Sbjct: 62  ATVVKSVTPGQMVVKIVHDELVATLGSDGQLIDLN-APAPIAIMMVGLQGSGKTTTTAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++      K+++A+ D +R AA +QL +     S + +    G     +A  A +  +
Sbjct: 121 ARRLTQRDKKKILMASLDVYRPAAQEQLAVLGRDLSVETLPVVAGQMPQQIAQRALQAGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  +M     +           PH VL V DA TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRTTLDEEMMREAAAVKTAAN------PHEVLLVADALTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE  + LE F     ++ I
Sbjct: 235 AFDERVGLTGIVLTRVDGDGRGGAALSMRAVTGKPIKLIGTGEKTDALEDFHPSRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|197303073|ref|ZP_03168121.1| hypothetical protein RUMLAC_01800 [Ruminococcus lactaris ATCC
           29176]
 gi|197297928|gb|EDY32480.1| hypothetical protein RUMLAC_01800 [Ruminococcus lactaris ATCC
           29176]
          Length = 319

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 128/308 (41%), Positives = 183/308 (59%), Gaps = 4/308 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  E   + R+L  G   T   +  G+  I     R+DD   EELE+ LI  D+GV    
Sbjct: 1   MGEEKKGFFRRLVSGLTKTRDNIVSGMDSIFHGFSRIDDDFYEELEETLIMGDLGVRATM 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVG 123
            I+E+L  K   K+  ++  L     LI  +   +      ++F +R  V+ V+GVNGVG
Sbjct: 61  DIIEDLKEKV--KEQHIKEPLECRQLLIDSIREQMDVGETAYEFENRTSVVFVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K+ D   KV+LAA DTFR+AA +QL+ WA+R   + +  + G+D A++ Y
Sbjct: 119 KTTTIGKLAGKLKDQNKKVILAAADTFRAAAGEQLREWANRAGVEMIGGQEGADPASVVY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K DVL+ DTAGRLHN   LM  + K+ RV+ R  P A    L VLDATTGQ
Sbjct: 179 DAVAAAKARKADVLLCDTAGRLHNKKNLMEELKKINRVIDREYPDAFRETLVVLDATTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F+ V   TG+++TKMDGTA+GG  + I     IPV ++GVGE I+DL+ F +
Sbjct: 239 NALAQAKEFNEVTDITGIVLTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIDDLQKFDS 298

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 299 EEFVKALF 306


>gi|330721416|gb|EGG99477.1| Signal recognition particle receptor protein FtsY [gamma
           proteobacterium IMCC2047]
          Length = 278

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 111/261 (42%), Positives = 164/261 (62%), Gaps = 2/261 (0%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR 110
            L+ +D+GV     +++ L  +   K +     LY  + + +  ++ P + P   +   +
Sbjct: 17  QLLMADMGVEAVTHVIDSLTEQLERKTLKDSDALYAALKQELRDLIKPCALPLQVE-DKK 75

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+VIL+VGVNG GKTT IGKL+K++   G  VMLAAGDTFR+AA++QL+ W  R     +
Sbjct: 76  PYVILMVGVNGAGKTTTIGKLAKRLQSEGRSVMLAAGDTFRAAAVEQLQEWGSRNDVPVI 135

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G+D+A++ ++A + A+A+  DVLI DTAGRL N   LMA + K+ RV+ +LD  AP
Sbjct: 136 AQHTGADSASVIFDAVESARARGADVLIADTAGRLQNKDNLMAELTKVKRVMAKLDDSAP 195

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H V+ VLDA TGQNAL Q  +F+   G TG+ MTK+DGTA+GG +  +     +P+ F+G
Sbjct: 196 HEVMLVLDAGTGQNALSQATLFNEAVGVTGISMTKLDGTAKGGVIFAVAKQLGLPIRFIG 255

Query: 291 VGEGINDLEPFVAKDFSAVIT 311
           VGE I+DL PF A +F   + 
Sbjct: 256 VGEKIDDLRPFDADEFVEALF 276


>gi|90421127|ref|ZP_01229029.1| signal recognition particle protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334619|gb|EAS48399.1| signal recognition particle protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 517

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   +  +     L D        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FDSLQDRLGSILNGLTGRGALSDKDVAAALREVRRALLEADVALEVVRDFTDRVRAKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + +   L       + + +  P V+++VG+ G GKTT  GKL
Sbjct: 62  AEILKSIRPGQMVVKIVHDELIATLGSEQVAIDLN-APAPVVLMMVGLQGSGKTTTTGKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      KV++A+ DT R AA +QL++  ++T    +    G     +A  A + A+
Sbjct: 121 AKRLTERQRKKVLMASLDTRRPAAQEQLRVLGEQTGVATLPIIAGQGPVEIAARAKQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGR H +  LM  +  + R  +      PH +L V D+ TGQ+A+    
Sbjct: 181 LGGYDLVILDTAGRTHIDEPLMVEMADIKRTTE------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE ++ LE F     +  I
Sbjct: 235 SFDERVGITGIVLTRVDGDGRGGAALSMRAVTGKPIKLIGTGEKMDALEDFHPSRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|270284295|ref|ZP_05965878.2| signal recognition particle protein [Bifidobacterium gallicum DSM
           20093]
 gi|270277497|gb|EFA23351.1| signal recognition particle protein [Bifidobacterium gallicum DSM
           20093]
          Length = 542

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 146/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLSNAFKHLKSKGKLSETDIDGTIREIRRALLDADVSLEVVRSFTGRVRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V++ +  +L   + +P N+     P +I++ G+ G GKTT+ 
Sbjct: 62  LGAEVSEALNPAQQVVKIVNDELTDILGQGVDRPINF-AKQPPTIIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CS 172
           GKL   + D+G   +L A D  R  A+ QL++  +R                        
Sbjct: 121 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLEVVGERAGVPVYAPERGVQSDGGEAVAAPG 180

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +   D   +A ++ + A+ K  D +IIDTAGRL  +  LM     +       D   P  
Sbjct: 181 QTSGDPVKVARDSIEYARRKLYDTVIIDTAGRLGVDEELMQQARDI------RDAVQPQE 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL V+DA  GQ+A+R  + F+     TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 235 VLFVIDAMIGQDAVRTAQAFNEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNG 294

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 295 EGLKDFEVFHPDRMASRILDMGD 317


>gi|33861842|ref|NP_893403.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33640210|emb|CAE19745.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 498

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++     D   ++++  L+ +D+ ++V ++ V ++  K   
Sbjct: 2   FDELSSRFEDAVKGLRGEAKISENNIDDALKQVKKALLDADVSLSVVKEFVSDVKDKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V++ +  ++   + P N      P VIL+ G+ G GKTT  GKL
Sbjct: 62  EEVVRGVNPGQKFIEVVNKELINIMGNENSPLN-KKETTPTVILMAGLQGAGKTTATGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQ 190
              + +   KV+L A D +R AA++QLK   ++   +     E  S    +A +A   A 
Sbjct: 121 GLYLKEKEEKVLLVAADIYRPAAVEQLKTIGNQYDLEVFSAKEKNSKPEEIARDALSYAN 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A  +D LI+DTAGRL  +  +M  + ++ +V K      P  VL V+D+  GQ A    +
Sbjct: 181 ANNIDTLIVDTAGRLQIDESMMGEMVRIKQVTK------PDEVLLVVDSMIGQEAADLTK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G TG I+TK+DG +RGG  + I      P+ F+G GE I  L+PF  +  ++ I
Sbjct: 235 SFHEKVGITGAILTKLDGDSRGGAALSIRKISGKPIKFIGTGEKIEALQPFHPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|289177965|gb|ADC85211.1| FtsY [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 508

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 115/318 (36%), Positives = 184/318 (57%), Gaps = 9/318 (2%)

Query: 2   SNQKVASE--SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
             +++       S +++L +  + +S    + + +I++  +L +   E++ED L+ +D+G
Sbjct: 192 PAEQIEKPAGKKSRLQRLRERLSKSSNPFGKALFNILAKDQLSEADWEDVEDTLLLADVG 251

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF--SHRPHVIL 115
              ++++V++L T       S  R L D   SEL+  +   + +    +   + +P VI+
Sbjct: 252 AEASEELVDKLRTDARVTGESDPRQLRDALRSELLALVGPDMDRTLEAEKPDAKKPSVII 311

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-I 174
           +VGVNG GKTT  GKL++        V+L A DTFR+AA DQL+ W  +     V S+  
Sbjct: 312 MVGVNGTGKTTTAGKLARLFVSEDKTVLLGAADTFRAAAADQLETWGAKVDVPVVRSDRE 371

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D A++A+EA  +A+    DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL
Sbjct: 372 GADPASVAFEASAKAKELGTDVLIIDTAGRLQNKANLMDELGKIRRVAEKNLP--VDEVL 429

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQN + Q ++F    G TG+++TK+DG+A+GG +I +     +PV  +GVGEG
Sbjct: 430 LVLDATTGQNGMAQAKVFAEAIGITGVVLTKLDGSAKGGIVISVQKELGVPVKLVGVGEG 489

Query: 295 INDLEPFVAKDFSAVITG 312
            +DL PF  + F   I G
Sbjct: 490 PDDLAPFDPESFVDGILG 507


>gi|87122825|ref|ZP_01078696.1| signal recognition particle protein [Marinomonas sp. MED121]
 gi|86161877|gb|EAQ63171.1| signal recognition particle protein [Marinomonas sp. MED121]
          Length = 422

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 86/272 (31%), Positives = 133/272 (48%), Gaps = 13/272 (4%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNW 105
             L+ +D+ + V +  ++ +  +    +VS      Q  L  V + + K++   +   N 
Sbjct: 1   MALLEADVALPVVKAFIDSVKERAVGTEVSKSLSPGQVFLKIVKQELEKVMGEANDELNL 60

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADR 164
             +  P VIL+ G+ G GKTT   KL++ + +   K + + + D +R AAI QL+  A+ 
Sbjct: 61  K-AKPPAVILLAGLQGAGKTTSAAKLARYLKERHKKSVAVVSADVYRPAAIKQLQTLANE 119

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              DF+ SE       +A  A   A+    DVLI+DTAGRL  +  +MA I  +   +  
Sbjct: 120 IGVDFIESEASQKPIDIANNAIDVARKSHKDVLILDTAGRLAIDDDMMAEIKALHTAID- 178

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V+DA TGQ+A    + F  V   TG+++TK DG ARGG  + +      
Sbjct: 179 -----PVETLFVVDAMTGQDAANTAKAFGDVLPLTGVVLTKTDGDARGGAALSVRHITGK 233

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           P+ FLGVGE    LEPF     ++ I G  D 
Sbjct: 234 PIKFLGVGEKTEALEPFHPDRLASRILGMGDM 265


>gi|255974286|ref|ZP_05424872.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T2]
 gi|256761077|ref|ZP_05501657.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T3]
 gi|255967158|gb|EET97780.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T2]
 gi|256682328|gb|EEU22023.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T3]
          Length = 353

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 45  EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 104

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 105 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 164

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 165 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 224

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 225 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 284

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 285 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 342


>gi|222112106|ref|YP_002554370.1| signal recognition particle protein [Acidovorax ebreus TPSY]
 gi|221731550|gb|ACM34370.1| signal recognition particle protein [Acidovorax ebreus TPSY]
          Length = 459

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 148/304 (48%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ + KL   + ++    R+ +     +  E+   L+ +D+ + V +  +  +  K   +
Sbjct: 3   SALTEKLTRLVKEMRGQARITEANVQDMLREVRMALLEADVALPVVRDFIARVKEKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q ++  V++ +   +       N + +  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVLGSLKPGQALVGIVNKELAATMGEGVADINLN-AQPPAVILMAGLQGAGKTTTTAKLA 121

Query: 133 KKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +    KV+  +GD +R AAI+QLK    +  A++  S      + +A  A   A+ 
Sbjct: 122 KHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAGAEWFPSTPDQKPSDIALGALDYAKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  + +LM  I  +  VL       P   L V+DA  GQ+A+   + 
Sbjct: 182 HFFDVLLVDTAGRLAIDEVLMQEIKDLHAVLN------PVETLFVVDAMQGQDAVNTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG +RGG  + +      P+ F GV E I+ LE F A+  +  I 
Sbjct: 236 FKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPIKFAGVSEKIDGLEVFDAERHAGRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|15594157|dbj|BAB64926.1| signal recognition particle protein 54 [Pyrococcus furiosus]
          Length = 443

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 149/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L   +  I  +  +D+ + +EL    +  LI++D+ V +  ++  E+  +   
Sbjct: 3   LDNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALE 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +         + ++  V E + K L   +KP   +   +P ++L+VG+ G GKTT + KL
Sbjct: 63  EKPPAGISKKEHIIKIVYEELTKFLGTEAKPI--EIKEKPTILLMVGIQGSGKTTTVAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G KV +   DT+R  A  QL+   DR   +   +    DA  LA E     ++
Sbjct: 121 ARYFQKRGYKVGVVCSDTWRPGAYHQLRQVLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VD++I+DTAGR   +  L+  + ++  V+       PH V+ V+D T GQ A  Q   
Sbjct: 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIH------PHEVILVIDGTIGQQAYNQALA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG+A+GGG +  V     P+ F+G GE I+D+EPF    F + + 
Sbjct: 235 FKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GLGD 298


>gi|206602219|gb|EDZ38701.1| Cell division protein (FtsY) [Leptospirillum sp. Group II '5-way
           CG']
          Length = 309

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 166/302 (54%), Gaps = 2/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           ++ +++L  G   T  KL   +  +    R      EELEDLLI SD+G   A  ++ +L
Sbjct: 1   MNILQRLGAGLKKTREKLGNNLAQLFGKER-SPQFYEELEDLLIISDVGPEQASLLIRDL 59

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIG 129
                      +       E       PL+ P   +    +P VIL+VGVNGVGKTT  G
Sbjct: 60  KEWEKTSGNGTKGDPLLFLEERIASFFPLNPPVWVEQPDWKPVVILMVGVNGVGKTTTTG 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G  V+L A DTFR+AA+ QL++W ++     V  + G+D AA+A++  K A
Sbjct: 120 KLAHRFQQEGKSVILGAADTFRAAAVQQLRLWGEKLEIPVVHQKEGADPAAVAFDTVKAA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+K+DV IIDTAGRL     LMA +GK+  ++KR     P   L VLD+T GQN + Q+
Sbjct: 180 LARKMDVAIIDTAGRLQTKHNLMAELGKIHGLVKREMEDRPFETLIVLDSTLGQNTVSQM 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      +G+I+TK+DGT++GG ++ +     +PV F+GVGEG +DL  F    ++  
Sbjct: 240 EHFRKAIPVSGMILTKLDGTSKGGIVVSLARKFHLPVRFVGVGEGKDDLVEFDPVLYARA 299

Query: 310 IT 311
           + 
Sbjct: 300 LL 301


>gi|311108734|ref|YP_003981587.1| signal recognition particle-docking protein FtsY [Achromobacter
           xylosoxidans A8]
 gi|310763423|gb|ADP18872.1| signal recognition particle-docking protein FtsY [Achromobacter
           xylosoxidans A8]
          Length = 296

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 175/300 (58%), Gaps = 11/300 (3%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           + +G + T     + I  I    ++D+ + EELE  LI +D G+   +K++  L  +   
Sbjct: 1   MKQGLSRT----GQSIGGIFVGVKVDENLFEELESALIMADAGLEATEKLLTALRARVKK 56

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           + +     +   + +L+   L PL + F+   +  P V+++ GVNG GKTT IGKL+   
Sbjct: 57  ERIEDPAKVKTALRQLLADHLRPLERAFDLKRTQ-PLVVMIAGVNGAGKTTSIGKLAHTF 115

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G  V+LAAGDTFR+AA +QL  W  R +   + S+ G D AA+A++A    +A+ + 
Sbjct: 116 QRQGASVLLAAGDTFRAAAREQLIEWGSRNNVTVI-SQDGGDPAAVAFDAVNAGRARGMG 174

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL Q+  F A 
Sbjct: 175 VVMVDTAGRLPTQLHLMEELKKIRRVIGKADAAAPHEVLLVVDGNTGQNALAQIRAFDAA 234

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHK----IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              TGL++TK+DGTA+GG L  +    +    IPVY++GVGE + DL+PFVA +F+  + 
Sbjct: 235 INLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGESLEDLQPFVADEFAGALL 294


>gi|303233299|ref|ZP_07319970.1| signal recognition particle protein [Atopobium vaginae PB189-T1-4]
 gi|302480599|gb|EFL43688.1| signal recognition particle protein [Atopobium vaginae PB189-T1-4]
          Length = 484

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S S +L++  + +     L +        E+   L+ +D+   V ++ V     K   
Sbjct: 2   FSSLSDRLQQTFSQLRGKATLTEQDIAAAMREIRMALLEADVNYRVVKEFVATCKEKCST 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + + ++L   S          P+VI++VG+ G GKTT   KL
Sbjct: 62  AEVLSSLTPAQNVVKVVLDELTRLLGSTSSGLVLSSGRTPNVIMLVGLQGSGKTTATAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   ++AA DT R AA DQL+  A      F  ++  + A  +A  A + A  
Sbjct: 122 AYLLKQQGRAPLVAACDTHRPAAADQLQTLAREIGVGFYRAD-NTPAQDVAAGAIQDAVD 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  D++IIDTAGR   +  +M     + + +K      P  +L V+DA  GQ+ +  V+ 
Sbjct: 181 KLKDIVIIDTAGRTQLDEEMMLEAIAIKQAVK------PDQILMVVDAMAGQDIVNVVKE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A     G+I++K+DG ARGGG + +      P+ F+ +GE  + LE F     +  I 
Sbjct: 235 FSARLDFDGVIISKLDGDARGGGALSVREVTGKPIKFVSMGEKPSSLEVFHPDRMAKRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|170079379|ref|YP_001736017.1| signal recognition particle-docking protein [Synechococcus sp. PCC
           7002]
 gi|169887048|gb|ACB00762.1| signal recognition particle-docking protein [Synechococcus sp. PCC
           7002]
          Length = 543

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 183/312 (58%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            ++ E + W++KL  G   T   L   +  ++    L+D    E+E LL+++D+G+    
Sbjct: 230 DISLEEIEWLKKLRDGLGKTRRSLVNQLKAVVGQGPLNDEAVLEIESLLLQADVGIEATD 289

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFS---HRPHVILVVGVN 120
            I+E L  +   + +  +  +  + E++  +L  PL+K  + +F+    + +V ++ GVN
Sbjct: 290 YIIETLQERLRQEALPPEAAIAYLKEILRDILDKPLAKLPSTEFAPEADKLNVWMLTGVN 349

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT IGKL+   + +G + ++AA DTFR+AA++Q+K+W +RT    + +    +D A
Sbjct: 350 GAGKTTTIGKLAHLANQSGYRCVIAAADTFRAAAVEQVKVWGERTDTPVIANPGKNTDPA 409

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++    AQA++  +L++DTAGRL N   LM  + K+ R++ +  P A    L VLDA
Sbjct: 410 AVVFDGITAAQARQAQILLVDTAGRLQNKKNLMDELAKIRRIVDKKAPDAQVESLLVLDA 469

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           T GQN LRQ ++F   A  +G+++TK+DGTARGG  + +     +P+ F+G GEGI DL 
Sbjct: 470 TLGQNGLRQAQVFSEAAKLSGVVLTKLDGTARGGVALAVSQQLGLPIRFIGAGEGIEDLR 529

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 530 PFSSYEFVEALL 541


>gi|78046894|ref|YP_363069.1| Signal recognition particle protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325924833|ref|ZP_08186268.1| Signal recognition particle protein [Xanthomonas perforans 91-118]
 gi|78035324|emb|CAJ22969.1| Signal recognition particle protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544763|gb|EGD16111.1| Signal recognition particle protein [Xanthomonas perforans 91-118]
          Length = 458

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   +  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTMERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELTAVMGAAATDLNLNVPA-PAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QLK  A++    F  S+       +   A   A+
Sbjct: 121 AKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDQAMMDEIKALHAAVN------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+G GE  + L+ F     ++ I
Sbjct: 235 AFGEALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVFHPDRVASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|323144365|ref|ZP_08078974.1| signal recognition particle protein [Succinatimonas hippei YIT
           12066]
 gi|322415867|gb|EFY06592.1| signal recognition particle protein [Succinatimonas hippei YIT
           12066]
          Length = 466

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    R+ +        E+   L+ +D+ + V +   +++  K   
Sbjct: 2   FDNLTERLNRTLKNISGKGRITEDNIKDTLREVRTALLEADVALPVVKSFTQKVKEKALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++VS+     Q  +  V   + + +   +   N   +  P VIL+ G+ G GKTT   KL
Sbjct: 62  QEVSLSLTPGQEFIKTVYAQLVETMGGETAELNL-ATQPPAVILLAGLQGAGKTTSAAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +    KV++ + DT+R AAIDQL   A   + D   S+  S   A+A  A  +A+
Sbjct: 121 ALYIKERLKKKVLMVSVDTYRPAAIDQLLTLAKEINVDAFPSDPKSTPEAIAAAALAEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DVLI+DTAGRL  +  +M  + K+  V+       P   L V+DA TGQ+A    +
Sbjct: 181 ARFYDVLIVDTAGRLAVDEFMMDEVKKLHAVVN------PIETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG ARGG  + +      P+ F+G+GE +  LEPF     ++ I
Sbjct: 235 AFAEALPLTGVILTKADGDARGGAALSVREITGKPIKFIGMGEKVAALEPFHPDRIASRI 294

Query: 311 TGCLDY 316
               D 
Sbjct: 295 LDMGDL 300


>gi|188996577|ref|YP_001930828.1| signal recognition particle protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931644|gb|ACD66274.1| signal recognition particle protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 444

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 147/304 (48%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + K    +  +   +++D+   +E    +   L+ +D+ V V ++ + ++  K   
Sbjct: 2   FELLTEKFSSVVEKLRGVKKIDEKTLDEALKDIRTALLEADVNVNVVKEFISDIKQKVLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++     + + V+  + +   K+L     P      + P +I++VG+ G GKTT  GKL
Sbjct: 62  QELIKGLSAGETVIKLIYDETIKILGGEESPTLAKPDNPPAIIMLVGLQGTGKTTTAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G +V +A+ D  R AA  QL   A          E   DA  L  +  + A+ 
Sbjct: 122 AKYLKSKGYRVGVASTDVRRPAAAKQLCTLAQSIDIPCFVDEEEKDALKLTEKVIQDAKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +    +I+DTAGRLH +  LM  + K+   +K         VL V DA  GQ+A+   E 
Sbjct: 182 QGFSYIILDTAGRLHIDQELMEELKKIKEKVKPA------EVLYVADAMQGQDAITTAEE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG+I+TK+DG A+GG  + +     +P+ F+G GE I +LEPF     +  I 
Sbjct: 236 FHKAVGLTGVILTKLDGDAKGGIALSVRKVLGVPIKFIGTGEKIENLEPFYPDRIAQRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GLGD 299


>gi|29377551|ref|NP_816705.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis V583]
 gi|227554515|ref|ZP_03984562.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis HH22]
 gi|29345018|gb|AAO82775.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis V583]
 gi|227176354|gb|EEI57326.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis HH22]
 gi|315573243|gb|EFU85434.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0309B]
 gi|315581183|gb|EFU93374.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0309A]
          Length = 442

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 254 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 313

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 314 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 374 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 431


>gi|260578971|ref|ZP_05846874.1| signal recognition particle protein [Corynebacterium jeikeium ATCC
           43734]
 gi|258602945|gb|EEW16219.1| signal recognition particle protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 515

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 136/307 (44%), Gaps = 30/307 (9%)

Query: 32  ITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQ 82
           +  +    +L +        E+   L+ +D+ + V +  ++ +  +    +VS      Q
Sbjct: 1   MKGLRGKGKLSEADINATAREIRLALLEADVSLPVVRAFIKRIKERAAGAEVSEALNPAQ 60

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           +V+  V+E + ++L   ++  N    H P VI++ G+ G GKTT+ GKL+  ++  G   
Sbjct: 61  QVIKIVNEELKEILGGETRRLNL-AKHPPTVIMLAGLQGAGKTTLAGKLALHLAKQGHTP 119

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSDAAALAYEAFKQ 188
           ML A D  R  A+ QL+I  +R        +                 D   +A    ++
Sbjct: 120 MLVACDLQRPGAVQQLQIVGERAGVKTFAPDPGTSLDSHDHEMGTSHGDPVDVAQRGIEE 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A   + D++IIDTAGRL  +  LM     +       D   P  VL V+DA  GQ+A+  
Sbjct: 180 AYRSQHDIVIIDTAGRLGIDEELMRQARNI------RDAVEPDEVLFVIDAMIGQDAVTT 233

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F      TG+++TK+DG ARGG  + I      P+ F   GE   D + F     + 
Sbjct: 234 AEAFRDGVDFTGVVLTKLDGDARGGAALSIREVTGKPILFASTGEKQEDFDVFHPDRMAN 293

Query: 309 VITGCLD 315
            I G  D
Sbjct: 294 RILGMGD 300


>gi|297588524|ref|ZP_06947167.1| cell division protein FtsY [Finegoldia magna ATCC 53516]
 gi|297573897|gb|EFH92618.1| cell division protein FtsY [Finegoldia magna ATCC 53516]
          Length = 378

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 179/311 (57%), Gaps = 3/311 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           N+        +  KL      T   +   I  ++++ R +D+ + EE+E+ LI +DIGV 
Sbjct: 68  NEDKEENKEGFFEKLKNSLLKTRDNISNKIDQVLANYRTVDEELFEEIEETLISADIGVE 127

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              KIV +L  K    ++     + +V ++++ + ++      N +   +  +ILVVGVN
Sbjct: 128 TTLKIVGQLRDKVKLNNIQDPSKIKNVLADILKENIINDKIDNNLNVDDK-TIILVVGVN 186

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ K    G KV++ A DTFR+AAI+QL  WA+R   D +  + GSD A+
Sbjct: 187 GVGKTTTIGKLAMKFKKDGKKVLMVAADTFRAAAIEQLTEWANRAKVDIISHKEGSDPAS 246

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++     +++  D+LI DTAGRLHN   LM  + K+ RV+++  P A   +L ++D T
Sbjct: 247 VVFDGVSAMKSRNADILICDTAGRLHNKKNLMNELNKIKRVIEKEYPEAKKEILLIVDGT 306

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q + F      TG I+TK+DGTA+GG + P+ +   IPV F+G+GE +NDL  
Sbjct: 307 TGQNAIIQAKEFMNATDLTGAIITKLDGTAKGGMIFPLEMELGIPVKFIGIGEQVNDLVK 366

Query: 301 FVAKDFSAVIT 311
           F  + F   I 
Sbjct: 367 FEPEKFIEAII 377


>gi|163931159|pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
          Length = 302

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 117/302 (38%), Positives = 176/302 (58%), Gaps = 6/302 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRL--DDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            K+  GF+ T   L   I +++    L   D V +ELE+ L+ SD G  +  +IVE L  
Sbjct: 1   EKVFSGFSKTRENL-AVIDELLLFWNLAETDRVLDELEEALLVSDFGPKITVRIVERLRE 59

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130
              +  +     + D + E + +ML   +          +P VI++VGVNG GKTT +GK
Sbjct: 60  DIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQA 189
           L+ ++ + G KV++AAGDTFR+AA DQL+IWA+RT  + V +E   + AA +  +A K+ 
Sbjct: 120 LAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV++ DT+GRLH N  LM  +    + + ++   AP+ +L VLD  TG N L Q 
Sbjct: 180 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+ V G TGLI+TK+DG+ARGG ++ +V    IPV F+GVGE + DL+PF  + F   
Sbjct: 240 REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNA 299

Query: 310 IT 311
           I 
Sbjct: 300 IF 301


>gi|32472944|ref|NP_865938.1| cell division protein FtsY [Rhodopirellula baltica SH 1]
 gi|32397623|emb|CAD73624.1| cell division protein FtsY [Rhodopirellula baltica SH 1]
          Length = 337

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 172/307 (56%), Gaps = 3/307 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIGVAVAQ 64
              S     K+  G   T   L   I D+     R +D+    EL   LIR+D+G   A 
Sbjct: 30  EEASGGLFGKMKTGLQKTRRVLGTDIRDLFKAEGRLVDEDFLGELYARLIRTDMGAGPAG 89

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +I + +      + V ++ V+  +++ I + L              P VILVVGVNG GK
Sbjct: 90  RIRDRVAKDFRGRVVHLEEVVETITQDIREQLKQDHGDL-AKADSPPTVILVVGVNGSGK 148

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKLS  +   G K++L AGDTFR+AA++QL IW++R   + V    G D A++AY+
Sbjct: 149 TTSIGKLSHHLVSQGHKIVLGAGDTFRAAAVEQLTIWSERIGCEIVTGPSGVDPASVAYQ 208

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++A     D  IIDTAGRL     LM  + K+ RV+ +  P APH VL VLDAT GQN
Sbjct: 209 TTEKAVEIGADYAIIDTAGRLQTQGKLMQELEKIRRVIDKKLPGAPHEVLLVLDATAGQN 268

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q + F   AG TG+I++K+DG+A+GG ++PI    ++PV F+G+GEGI D+  F   
Sbjct: 269 AISQAKGFSNAAGCTGIILSKLDGSAKGGVVLPIREQFELPVKFVGLGEGIEDMTKFDPD 328

Query: 305 DFSAVIT 311
            F+A + 
Sbjct: 329 TFAAALL 335


>gi|297620933|ref|YP_003709070.1| Signal recognition 54 kDa protein Ffh [Waddlia chondrophila WSU
           86-1044]
 gi|297376234|gb|ADI38064.1| Signal recognition 54 kDa protein Ffh [Waddlia chondrophila WSU
           86-1044]
          Length = 442

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 147/306 (48%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + K+++  + I    +L ++ + E   E+   L+ +D+  +VA+ +V+ L  K   
Sbjct: 2   LGALTDKMQDLFSKITGKSKLTEENIAEAVSEVRLALLEADVNYSVAKVLVKRLKEKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+ +  V + + +++     P   D   +P V+++ G+ G GKTT   KL
Sbjct: 62  DAVLKSISPGQQFIKIVHDELIELMGGEEAPL--DLKSKPAVVMMCGLQGSGKTTQCAKL 119

Query: 132 SKKMSDAGLK--VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +  +         +LAA D  R AAI+QLK    +           +    +A  A ++A
Sbjct: 120 ANYLKKQKKCRQPLLAACDLQRPAAIEQLKTLGGKIGVPVFSIPNENSPVKVAKAALERA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D+LI+DTAGRLH +  LM  + ++ +  K      PH +L V +A TGQ+A+   
Sbjct: 180 RQEGFDLLILDTAGRLHIDDELMDQLQQIKQATK------PHEILFVANAATGQDAVTVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG I+T +D   RGG  I I      P+ F GVGE I+D++PF     +  
Sbjct: 234 SEFNQKVEVTGTILTMLDSNTRGGAAISIREVTGKPLKFEGVGEKIDDIQPFNPNSMADR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|325285394|ref|YP_004261184.1| signal recognition particle-docking protein FtsY [Cellulophaga
           lytica DSM 7489]
 gi|324320848|gb|ADY28313.1| signal recognition particle-docking protein FtsY [Cellulophaga
           lytica DSM 7489]
          Length = 320

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 119/300 (39%), Positives = 178/300 (59%), Gaps = 6/300 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             L KG   +       ++  ++ + ++DD V + LE++L+ SD+GV    KI++ +  +
Sbjct: 14  ESLDKGLEKSKSSFFSKLSKAVAGKTKVDDDVLDNLEEILVTSDVGVDTTLKIIDRIEAR 73

Query: 74  R-YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTVI 128
               K +    +   + E I  +L   +     +F      +P+VI+VVGVNGVGKTT I
Sbjct: 74  VSKDKYLGTDELNVILREEIAALLSETNTGNETEFVVPKGVKPYVIMVVGVNGVGKTTTI 133

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++ +    GLKV+L A DTFR+AAIDQL++WADR     V  ++GSD A++A++    
Sbjct: 134 GKMAYQFKKQGLKVVLGAADTFRAAAIDQLQVWADRVDIPIVKQKMGSDPASVAFDTLSS 193

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A  +  DV+IIDTAGRLHN   LM  + K+ RV+ ++  + PH V+ VLD +TGQNA  Q
Sbjct: 194 AVTQNADVVIIDTAGRLHNKVNLMNELTKVKRVMHKVVDNTPHDVMLVLDGSTGQNAFEQ 253

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      T L +TK+DGTA+GG +I I    +IPV ++GVGEGI DL+ F   +F  
Sbjct: 254 AKQFTKATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGIEDLQVFNKYEFVD 313


>gi|17986509|ref|NP_539143.1| signal recognition particle, subunit FFH/SRP54 [Brucella melitensis
           bv. 1 str. 16M]
 gi|225853269|ref|YP_002733502.1| signal recognition particle protein [Brucella melitensis ATCC
           23457]
 gi|256045424|ref|ZP_05448316.1| signal recognition particle protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256114399|ref|ZP_05455124.1| signal recognition particle protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263243|ref|ZP_05465775.1| signal recognition particle protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260565686|ref|ZP_05836169.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991853|ref|ZP_06104410.1| signal recognition particle protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265995692|ref|ZP_06108249.1| signal recognition particle protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|17982112|gb|AAL51407.1| signal recognition particle, subunit ffh/srp54 [Brucella melitensis
           bv. 1 str. 16M]
 gi|225641634|gb|ACO01548.1| signal recognition particle protein [Brucella melitensis ATCC
           23457]
 gi|260151059|gb|EEW86154.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|262766976|gb|EEZ12594.1| signal recognition particle protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263002809|gb|EEZ15212.1| signal recognition particle protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263093205|gb|EEZ17302.1| signal recognition particle protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326409830|gb|ADZ66895.1| signal recognition particle protein [Brucella melitensis M28]
 gi|326539546|gb|ADZ87761.1| signal recognition particle protein [Brucella melitensis M5-90]
          Length = 523

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   LI +D+ + V +   + +  K   
Sbjct: 2   FETLQERLGSILNGLTGRGALSESDVTAALREVRRALIEADVSLEVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       + + +  P VI++VG+ G GKTT  GK+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELVEMLGTEGVAIDLN-APAPVVIMMVGLQGSGKTTTTGKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      +V++A+ DT R AA +QL+    +T  D +    G     +A  A + A+
Sbjct: 121 AKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDTLPIIAGQSPVEIARRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+  +  GE ++ LE F  K  +  I
Sbjct: 235 NFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLIATGEKMDALEEFYPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|300123716|emb|CBK24988.2| unnamed protein product [Blastocystis hominis]
          Length = 521

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 95/307 (30%), Positives = 150/307 (48%), Gaps = 14/307 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + +L KG  S   KL+   T +I    + + V +E+ + L+ SD+ + +  K+ E +  +
Sbjct: 3   LAELGKGLTSALSKLQ---TSVIIDDNVVNEVIKEISNALLHSDVNLKIVMKLRETIKNR 59

Query: 74  RY----AKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                 A  V+  RV+   V E +  ML P+          R +VI+ VG+ G GKTT I
Sbjct: 60  VTIECQAAGVNKHRVIQRAVYEELVNMLSPVEVQPFKPVRGRSNVIMFVGLQGSGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK +      G +  +   DTFR+ A DQLK  A +    F  S   SD   +A +   Q
Sbjct: 120 GKFAAYYKRKGWRTCMVCADTFRAGAFDQLKQNAVKVKVPFYGSYTESDPVVIAEQGVSQ 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +  +++I+DT+GR      L   + ++   +       P +++ VLD+T GQ A  Q
Sbjct: 180 FKKEHFEIIIVDTSGRHKQEEGLFEEMKQVQSHIH------PDNIVFVLDSTIGQAAFDQ 233

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F        +I+TK+DG A+GGG +  V     P+ F G GEG +DLEPF A  F +
Sbjct: 234 AQAFQRTVDIGSVIITKLDGNAKGGGALSAVAATGAPIIFTGSGEGFDDLEPFEASSFVS 293

Query: 309 VITGCLD 315
            + G  D
Sbjct: 294 RLLGMGD 300


>gi|297587488|ref|ZP_06946132.1| signal recognition particle protein [Finegoldia magna ATCC 53516]
 gi|297574177|gb|EFH92897.1| signal recognition particle protein [Finegoldia magna ATCC 53516]
          Length = 449

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 157/304 (51%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+  ++ + +  +L +   +    E++  L+ +D+   V +  + ++  +   
Sbjct: 6   FENLSDKLQNALSKLTNRGKLTEKDIDVAMREVKLALLEADVNYKVVKDFISQVKERAID 65

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+V+  V+E + KM+    +  N     +P VI++ G+ G GKTT  GKL
Sbjct: 66  SSVLESLTPGQQVIKIVNEELTKMMGEKEEKLNVS-PMKPTVIMLCGLQGAGKTTHAGKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  + +    V+L A D +R AAI QL++   +   +       ++   ++ +A ++A+ 
Sbjct: 125 ALNLKNKNKSVLLVACDIYRPAAIKQLQVVGGKVGVEVFEMG-QTNPVEISKKAIEEAKK 183

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D +IIDTAGRLH +  LM  +  + + +   D      +L V+DA TGQ+A+     
Sbjct: 184 KNIDYVIIDTAGRLHIDDTLMDELKNIKQEVNPSD------ILLVVDAMTGQDAVNVAAK 237

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+I+TK+DG ARGG  + I      P+ F+GVGE + DLEPF     ++ I 
Sbjct: 238 FNEDLDITGIILTKLDGDARGGAALSIRQVADKPIKFIGVGEKLGDLEPFHPDRMASRIL 297

Query: 312 GCLD 315
           G  D
Sbjct: 298 GMGD 301


>gi|159030302|emb|CAO91197.1| ftsY [Microcystis aeruginosa PCC 7806]
          Length = 444

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 108/313 (34%), Positives = 184/313 (58%), Gaps = 5/313 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + V+ E ++W++KL +G   T   L   +  ++    L+    EE+E LL+++D+GV   
Sbjct: 129 EDVSEEEITWLKKLRQGLGKTRRSLVNQLKAVVGQGPLNQDAVEEIEALLLQADVGVDAT 188

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGV 119
             I+  L  K   + +  ++ +  + E+I ++L       S P       + ++ ++ GV
Sbjct: 189 DYIITTLQNKLKQEALPPEKAIEYLKEIIREILDAPLANYSNPGFEPEKGKLNIWMLTGV 248

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NGVGKTT IGKL+     +G   ++AA DTFR+AA++Q+K+W +R+  + + +    +D 
Sbjct: 249 NGVGKTTTIGKLAHLSKQSGYSCIIAAADTFRAAAVEQVKVWGERSQVEVIANPGKNTDP 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+  + A++++V++L++DTAGRL N   LMA + K+ R++ +    A    L VLD
Sbjct: 309 AAVVYDGIEAAKSREVELLLVDTAGRLQNKKNLMAELSKIRRIIDKKAESAVVESLLVLD 368

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN LRQ E+F   A  +G+I+TK+DGTA+GG  + +     +P+ F+G GEGI DL
Sbjct: 369 ATLGQNGLRQAEVFSEAAQLSGVILTKIDGTAKGGVALAVARQLNLPIRFVGAGEGIEDL 428

Query: 299 EPFVAKDFSAVIT 311
            PF + +F   + 
Sbjct: 429 RPFSSYEFVEALL 441


>gi|56419729|ref|YP_147047.1| signal recognition particle GTPase [Geobacillus kaustophilus
           HTA426]
 gi|56379571|dbj|BAD75479.1| signal recognition particle GTPase (docking protein) [Geobacillus
           kaustophilus HTA426]
          Length = 328

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 185/311 (59%), Gaps = 6/311 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K   ++ +   K  +G + T   L   + D+I+  R++D+   EELE++LI +D+GV 
Sbjct: 8   KEKWTKQADAVTEKFKEGLSKTRNSLAGKVNDLIARYRKVDEEFFEELEEILIAADVGVT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF----SHRPHVILV 116
              ++V+EL  +   +++     + DV +E +  +    +                VIL 
Sbjct: 68  TVMELVDELKMEVKRRNIQDPAQMRDVIAEKLVDIYRAGADGKELSALNIQEGGLTVILF 127

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ K+   G  V+LAAGDTFR+ AI+QL+ W +R   D +    GS
Sbjct: 128 VGVNGVGKTTTIGKLAHKLKSEGKSVLLAAGDTFRAGAIEQLEAWGERVGVDVIKQAAGS 187

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV+ R  P APH VL V
Sbjct: 188 DPAAVMYDAIQAAKARGVDVLLCDTAGRLQNKVNLMKELEKVKRVISREIPGAPHEVLLV 247

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q ++F      TG+++TK+DGTA+GG ++ I     IPV  +G+GE ++
Sbjct: 248 LDATTGQNAMSQAKLFKEATDVTGIVLTKLDGTAKGGIVLAIRNEMAIPVKLVGLGEKMD 307

Query: 297 DLEPFVAKDFS 307
           DL+ F  + + 
Sbjct: 308 DLQVFDPEQYV 318


>gi|323454201|gb|EGB10071.1| hypothetical protein AURANDRAFT_36724 [Aureococcus anophagefferens]
          Length = 497

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 92/307 (29%), Positives = 144/307 (46%), Gaps = 19/307 (6%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            KLT                +IS   LD  + +++   L+ +D+ V V  ++ + + T+ 
Sbjct: 8   SKLTAALHKMQS------VTVISEEVLDK-MLKDIAAALLEADVNVRVVMELRKAIKTRA 60

Query: 75  YAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             ++ S      + +   V E +  ML P  K         P+VI+ VG+ G GKTT I 
Sbjct: 61  NLEEESAGTNRRKMIQKAVVEELAGMLDPGVKAHEMK-KGSPNVIMFVGLQGAGKTTTIA 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K +      G K  +   DTFR+ A DQL+  A +    F  S   +D   +A E   Q 
Sbjct: 120 KFANHYLRKGFKCCMVCADTFRAGAYDQLRQNATKLRCPFYGSYTEADPVRIAQEGVDQF 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K +V+I+DT+GR    + L   + ++   ++      P +V+ VLDAT GQ    Q 
Sbjct: 180 KAEKYEVIIVDTSGRHKQETALFEEMQEIRAAIE------PQNVIFVLDATQGQAVHEQA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             FH       +++TK+DG A+GGG +  V     P+ FLG GE  +D EPF A  F + 
Sbjct: 234 SSFHEAIDIGSVVITKLDGHAKGGGALSAVAATGAPILFLGSGEHFDDFEPFNAHSFVSR 293

Query: 310 ITGCLDY 316
           + G  D 
Sbjct: 294 LLGMGDM 300


>gi|254486217|ref|ZP_05099422.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           GAI101]
 gi|214043086|gb|EEB83724.1| signal recognition particle-docking protein FtsY [Roseobacter sp.
           GAI101]
          Length = 399

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 125/278 (44%), Positives = 189/278 (67%), Gaps = 1/278 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           +  R LDD + E+LE+LLI +D+GV  A ++   +   R+ K +SV  +   ++  I ++
Sbjct: 120 VVRRVLDDEMLEQLEELLISTDMGVDTALRVTANMAEGRFGKRLSVDEIKRLLAAEIARI 179

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + P++KP    +S  P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA+
Sbjct: 180 MDPIAKPLPL-YSKTPQVVLVVGVNGSGKTTTIGKLASQFKAAGKHVVIAAGDTFRAAAV 238

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL++W DR     + +  GSD A+LA+EA  QA+    D+L+IDTAGRL N   LM  +
Sbjct: 239 EQLQVWGDRAGVPVLTAAQGSDPASLAFEAMGQAERDGADLLLIDTAGRLQNRGDLMEEL 298

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K++RV+++ D  APH+ L VLDATTGQNAL QV++F  ++  +GL+MTK+DGTA+GG L
Sbjct: 299 AKIVRVIRKKDATAPHNTLLVLDATTGQNALNQVKVFQEISDVSGLVMTKLDGTAKGGVL 358

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           + +     +P++ +GVGE I+DL+PF  ++F+  + G 
Sbjct: 359 VALADKFGLPIHAIGVGEQIDDLQPFDPQEFADALMGL 396


>gi|88809353|ref|ZP_01124861.1| signal recognition particle docking protein FtsY [Synechococcus sp.
           WH 7805]
 gi|88786572|gb|EAR17731.1| signal recognition particle docking protein FtsY [Synechococcus sp.
           WH 7805]
          Length = 480

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 174/312 (55%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V  E + W+ +L +G   T      G+ + +    L   V ++LE LL+R+D GV    
Sbjct: 166 QVTLEEIDWLGRLRQGLEKTRQGFVTGLLENLGDDPLTPEVLDDLESLLLRADAGVKATD 225

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVN 120
           ++++ L  +   + V     +  + E +  +L    K    +       + +V L+VGVN
Sbjct: 226 QVLDALRKRMNEQVVDPSEGIRFLKEQLRDLLDAPIKSSGVELLAPQRGQLNVWLMVGVN 285

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           GVGKTT +GKL+     +G   M+AA DTFR+AA+ Q+++W DR+    V +    +D A
Sbjct: 286 GVGKTTTLGKLANLAVRSGYSAMIAAADTFRAAAVQQVQVWGDRSDVPVVANPSANADPA 345

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A++K  D++++DTAGRL     LM  + K+ RV+ RL P A    L VLDA
Sbjct: 346 AVVFDAIGAARSKSTDLVLVDTAGRLQTKHNLMEELNKIRRVVDRLAPDATVESLLVLDA 405

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN L+Q   F   AG TG+++TK+DGTARGG  + +     +P+ F+G GEGI DL 
Sbjct: 406 SQGQNGLKQAMAFARAAGLTGVVITKLDGTARGGVALAVASEAGLPIRFIGAGEGIRDLR 465

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 466 PFNSFEFVEALL 477


>gi|313139569|ref|ZP_07801762.1| signal recognition particle protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132079|gb|EFR49696.1| signal recognition particle protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 569

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 153/334 (45%), Gaps = 33/334 (9%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVA 63
           S + + + ++   F+S + +L      + S  +L     DG   E+   L+ +D+ + V 
Sbjct: 12  SAATARLVRIMAAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVV 71

Query: 64  QKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVV 117
           +     +  +    +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ 
Sbjct: 72  RSFTARIRERALGTEVSEALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLA 130

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV------- 170
           G+ G GKTT+ GKL   + D+G   +L A D  R  A+ QL++  +R             
Sbjct: 131 GLQGAGKTTLAGKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQ 190

Query: 171 ---------CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                      E   D   +A ++   A+ K  D +IIDTAGRL  + +LM     +   
Sbjct: 191 SDGGDSVSAPGETSGDPVKVARDSIALAKQKLYDTVIIDTAGRLGVDEVLMQQARDI--- 247

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
               D   P+ +L V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +   
Sbjct: 248 ---RDAVNPNEILFVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASV 304

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              P+ F   GEG+ D E F     ++ I    D
Sbjct: 305 TGKPILFASTGEGLKDFEVFHPDRMASRILDMGD 338


>gi|210633180|ref|ZP_03297716.1| hypothetical protein COLSTE_01629 [Collinsella stercoris DSM 13279]
 gi|210159220|gb|EEA90191.1| hypothetical protein COLSTE_01629 [Collinsella stercoris DSM 13279]
          Length = 494

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 137/306 (44%), Gaps = 17/306 (5%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F S S +L +    +    +L +        E+   L+ +D+   V +  V     + 
Sbjct: 7   AAFGSLSDRLNDTFDRLRGKGKLTEADINVAMREIRMALLEADVNYRVVKDFVTRTKERC 66

Query: 75  YAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              +V       Q V+  V + + ++L           S  P+VI++VG+ G GKTT   
Sbjct: 67  LTAEVLESLTPAQNVVKIVLDELTELLGGTESKLVLS-SRIPNVIMLVGLQGSGKTTAAV 125

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+  +   G   +LAA D +R AA DQL              + G+    +A  + ++A
Sbjct: 126 KLAYMLKKQGKSPLLAACDVYRPAAADQLATLGGEIGVPVFRGD-GAHPVEIARASIREA 184

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV+I+DTAGRL  +  +M     + + +K      P  VL V+DA TGQ+ +  V
Sbjct: 185 VDTMRDVVIVDTAGRLQIDEEMMQEAVDIKKAVK------PDQVLMVVDAMTGQDIVNVV 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F       G+I++K+DG ARGGG + +      P+ F+ +GE  + LE F  +  +  
Sbjct: 239 STFAERTDFDGVIISKLDGDARGGGALSVREVTGKPIKFVSMGEKPDSLEVFSPERMAKR 298

Query: 310 ITGCLD 315
           I G  D
Sbjct: 299 ILGMGD 304


>gi|149200421|ref|ZP_01877437.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Lentisphaera araneosa
           HTCC2155]
 gi|149136490|gb|EDM24927.1| fused Signal Recognition Particle (SRP) receptor: membrane binding
           protein/conserved protein [Lentisphaera araneosa
           HTCC2155]
          Length = 311

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 115/303 (37%), Positives = 172/303 (56%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                   KG   T   L      + S+  + D+    +LE  LI +D+GV+V QKI+ +
Sbjct: 2   KGIFDVFKKGLKKTKTALFRSFESVFSNVEKWDEDTYRQLEAALISADLGVSVTQKIIAD 61

Query: 70  LLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +       ++     + +++   I  +L   ++P N + ++ P V+L+VGVNG GKTT  
Sbjct: 62  IKESYNLGEIKTSEDIINIATTRITSILEDDNRPLNIN-TNGPTVLLMVGVNGAGKTTTT 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ K+   G  V+LAA DTFR+AAI+QLK W  R     +  + GSDAAA+AY+A   
Sbjct: 121 GKLAYKLKQDGKSVLLAACDTFRAAAIEQLKHWGKRIDVPVIAGQHGSDAAAIAYDACAS 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK VD LIIDTAGR H    LM  + K++RV+++  P APH  + V+D +TG NAL Q
Sbjct: 181 AKAKNVDYLIIDTAGRQHTRQDLMEELPKILRVIRKNFPEAPHETVLVVDGSTGTNALFQ 240

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F      T L +TK+DG+ +GG ++ I   H  P++F+G+GE   DL+PF    ++ 
Sbjct: 241 AREFGKACEVTSLAVTKLDGSGKGGVVVAIKDEHTFPIHFVGLGESPEDLQPFDPILYAE 300

Query: 309 VIT 311
            I 
Sbjct: 301 AIF 303


>gi|88803314|ref|ZP_01118840.1| signal recognition particle protein [Polaribacter irgensii 23-P]
 gi|88780880|gb|EAR12059.1| signal recognition particle protein [Polaribacter irgensii 23-P]
          Length = 442

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 150/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL + +  +    ++ +       +E+   L+ +D+   +A++  +++ T+   
Sbjct: 2   FNNLSDKLDKALHTLKGHGKITEVNVAETLKEVRRALLDADVNFKIAKEFTKKVQTQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  V + +  ++   +   N   +  P +IL+ G+ G GKTT  GKL
Sbjct: 62  QDVLTTLNPGQLMIKLVKDELTVLMGGETVGVNL--AGSPTIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K +L    D +R AAI+QL++   +   +       ++   ++  A K A+
Sbjct: 120 ANFLKTKKSKEVLLVGCDVYRPAAINQLQVVGAQIGVEVYAEVDNNNPVEISKNAVKYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   +V+IIDTAGRL  +  +M  I ++ + ++      P   L V+DA TGQ+A+   +
Sbjct: 180 ANGKNVVIIDTAGRLAVDEEMMKEISEIHKTIQ------PQETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +    G+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F     +  I
Sbjct: 234 AFNDILNFDGVVLTKLDGDTRGGAALSIKSVVNKPIKFIGTGEKMDALDVFHPDRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|237744886|ref|ZP_04575367.1| signal recognition particle receptor FtsY [Fusobacterium sp. 7_1]
 gi|229432115|gb|EEO42327.1| signal recognition particle receptor FtsY [Fusobacterium sp. 7_1]
          Length = 328

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 189/313 (60%), Gaps = 7/313 (2%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIG 59
           +  +K  ++ ++  ++LT     +       + +I +S+ ++DD + EELEDLL++SD+G
Sbjct: 20  IDKEKEENQKVNISQRLT----KSKEGFFSKLKNIFTSKSKVDDSIYEELEDLLLQSDVG 75

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           + +   ++ +L  +  +  +     +Y+V  +L+ + L+           ++ +VIL+VG
Sbjct: 76  LNMTTNLINQLEKEVKSNKIDNTEEVYEVLKKLMSEFLLSQDSKIYLK-DNKINVILIVG 134

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K    G KV+L AGDTFR+AA++QL+ WA R   D V    G+D 
Sbjct: 135 VNGVGKTTTIGKLALKYKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADP 194

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+   +A++ K DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D
Sbjct: 195 ASVVYDTLSRAESIKADVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVID 254

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            TTGQN L Q + F++V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL
Sbjct: 255 GTTGQNGLNQAKEFNSVTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIEDL 314

Query: 299 EPFVAKDFSAVIT 311
             F AKDF   I 
Sbjct: 315 IEFNAKDFVEAIF 327


>gi|62290689|ref|YP_222482.1| Ffh, signal recognition particle protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82700604|ref|YP_415178.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
           biovar Abortus 2308]
 gi|189024903|ref|YP_001935671.1| Ffh, signal recognition particle protein [Brucella abortus S19]
 gi|237816190|ref|ZP_04595185.1| signal recognition particle protein [Brucella abortus str. 2308 A]
 gi|254694470|ref|ZP_05156298.1| Ffh, signal recognition particle protein [Brucella abortus bv. 3
           str. Tulya]
 gi|254698130|ref|ZP_05159958.1| Ffh, signal recognition particle protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254731014|ref|ZP_05189592.1| Ffh, signal recognition particle protein [Brucella abortus bv. 4
           str. 292]
 gi|256258233|ref|ZP_05463769.1| Ffh, signal recognition particle protein [Brucella abortus bv. 9
           str. C68]
 gi|260547073|ref|ZP_05822811.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260758737|ref|ZP_05871085.1| signal recognition particle protein [Brucella abortus bv. 4 str.
           292]
 gi|260762571|ref|ZP_05874908.1| signal recognition particle protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884536|ref|ZP_05896150.1| signal recognition particle protein [Brucella abortus bv. 9 str.
           C68]
 gi|261214786|ref|ZP_05929067.1| signal recognition particle protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|297249082|ref|ZP_06932790.1| signal recognition particle protein [Brucella abortus bv. 5 str.
           B3196]
 gi|62196821|gb|AAX75121.1| Ffh, signal recognition particle protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82616705|emb|CAJ11790.1| Disease resistance protein:GTP-binding signal recognition particle
           (SRP54) G-domain:ATP/GTP-binding site motif A
           (P-loop):AAA [Brucella melitensis biovar Abortus 2308]
 gi|189020475|gb|ACD73197.1| Ffh, signal recognition particle protein [Brucella abortus S19]
 gi|237788652|gb|EEP62865.1| signal recognition particle protein [Brucella abortus str. 2308 A]
 gi|260095438|gb|EEW79316.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260669055|gb|EEX55995.1| signal recognition particle protein [Brucella abortus bv. 4 str.
           292]
 gi|260672997|gb|EEX59818.1| signal recognition particle protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260874064|gb|EEX81133.1| signal recognition particle protein [Brucella abortus bv. 9 str.
           C68]
 gi|260916393|gb|EEX83254.1| signal recognition particle protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|297174215|gb|EFH33572.1| signal recognition particle protein [Brucella abortus bv. 5 str.
           B3196]
          Length = 523

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   LI +D+ + V +   + +  K   
Sbjct: 2   FETLQERLGSILNGLTGRGALSESDVTAALREVRRALIEADVSLEVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       + + +  P VI++VG+ G GKTT  GK+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELVEMLGTEGVAIDLN-APAPVVIMMVGLQGSGKTTTTGKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      +V++A+ DT R AA +QL+    +T  D +    G     +A  A + A+
Sbjct: 121 AKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDTLPIIAGQSPVEIARRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+  +  GE ++ LE F  K  +  I
Sbjct: 235 NFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLIATGEKMDALEEFYPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|84498340|ref|ZP_00997137.1| signal recognition particle protein [Janibacter sp. HTCC2649]
 gi|84381840|gb|EAP97723.1| signal recognition particle protein [Janibacter sp. HTCC2649]
          Length = 536

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 145/322 (45%), Gaps = 34/322 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++ +  RL +        ++   L+ +D+ + V ++    +  +   
Sbjct: 2   FTSLSDRLTATFKNLRTKGRLSESDVNKTVRDIRMALLDADVALPVVKEFTSAVRERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+++  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQSLNPAQQIVKIVNEELVDILGGQTRTIRF-AKTGPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI----------------- 174
           ++ + D G   +L A D  R  A+ QL++  +R        E                  
Sbjct: 121 ARWLKDQGHTPILVAADLQRPNAVTQLQVVGERAGVPVFAPEQGNVGGHDAVGGTGEGTR 180

Query: 175 -GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D   ++ +  ++A  K  DV+I+DTAGRL  ++ LM   G +   +       P+ V
Sbjct: 181 SFGDPVTVSRDGIREAVNKHHDVVIVDTAGRLAVDADLMKQAGDIRAAIN------PNEV 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+DA  GQ A+   E F      TG++++K+DG ARGG  + +      P+ F   GE
Sbjct: 235 LFVIDAMIGQAAVETAEAFLEGVDFTGVVLSKLDGDARGGAALSVAKVTGRPIMFASTGE 294

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
           G+ D E F     ++ I    D
Sbjct: 295 GVKDFEVFHPDRMASRILDMGD 316


>gi|229547478|ref|ZP_04436203.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX1322]
 gi|300861537|ref|ZP_07107621.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TUSoD Ef11]
 gi|307273590|ref|ZP_07554818.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0855]
 gi|229307402|gb|EEN73389.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX1322]
 gi|295114416|emb|CBL33053.1| signal recognition particle-docking protein FtsY [Enterococcus sp.
           7L76]
 gi|300848998|gb|EFK76751.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TUSoD Ef11]
 gi|306509603|gb|EFM78645.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0855]
 gi|315026457|gb|EFT38389.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX2137]
 gi|315028380|gb|EFT40312.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX4000]
 gi|315145471|gb|EFT89487.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX2141]
 gi|315146608|gb|EFT90624.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX4244]
          Length = 442

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 254 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 313

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 314 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 374 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 431


>gi|229548053|ref|ZP_04436778.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis ATCC 29200]
 gi|307292113|ref|ZP_07571979.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0411]
 gi|312905396|ref|ZP_07764510.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0635]
 gi|229306842|gb|EEN72838.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis ATCC 29200]
 gi|306496766|gb|EFM66317.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0411]
 gi|310631125|gb|EFQ14408.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0635]
 gi|315161162|gb|EFU05179.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0645]
 gi|315577150|gb|EFU89341.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0630]
          Length = 442

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 254 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 313

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 314 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 374 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 431


>gi|154500959|ref|ZP_02038997.1| hypothetical protein BACCAP_04645 [Bacteroides capillosus ATCC
           29799]
 gi|150269983|gb|EDM97502.1| hypothetical protein BACCAP_04645 [Bacteroides capillosus ATCC
           29799]
          Length = 299

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 124/302 (41%), Positives = 180/302 (59%), Gaps = 4/302 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  K+  G   T   +   +  + +   LDD   +ELE+ LI  D+G+    K V EL
Sbjct: 1   MGFFDKIKAGLTRTKENIGHSLDSLFAGE-LDDDFYDELEETLILGDMGMDTTIKAVAEL 59

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +  A+ +       + +  ++  ML         D S  P VILV+GVNGVGKTT IG
Sbjct: 60  RRRVKAEKIKDTEGARECLRRVLTDMLN--VGDCALDLSASPAVILVIGVNGVGKTTTIG 117

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL  ++   G KV+LAA DTFR+AA DQL+IW+ R+  + V    G+D AA+ ++A + A
Sbjct: 118 KLGARLKGEGKKVLLAAADTFRAAAADQLEIWSQRSEVELVRQHEGADPAAVVFDAMQAA 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DV+++DTAGRLHN   LM  + K+ RV+ R  P +    L VLDATTGQN L Q 
Sbjct: 178 KARKTDVVLVDTAGRLHNKQNLMNELNKIGRVIDRELPGSRTETLLVLDATTGQNGLIQA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F   AG TG+++TK+DG+A+GG +I I    ++PV ++GVGEGI+DL PF A+ F   
Sbjct: 238 KQFMEAAGITGIVLTKLDGSAKGGVVIAIADALQVPVKYIGVGEGIDDLMPFDAEYFVRA 297

Query: 310 IT 311
           + 
Sbjct: 298 LI 299


>gi|332884206|gb|EGK04474.1| signal recognition particle-docking protein FtsY [Dysgonomonas
           mossii DSM 22836]
          Length = 317

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 130/313 (41%), Positives = 192/313 (61%), Gaps = 13/313 (4%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
            +  K     L KG   T   +   ++ +++ + ++DD V ++LE++LI SD+GV    K
Sbjct: 5   DFFSKQKKETLDKGLEKTKESMFSKLSRVVAGKSKVDDDVLDDLEEVLITSDVGVNTTLK 64

Query: 66  IVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVILVVGV 119
           I+E +  KR AKD  ++   +   + E I  +L   +    + F+   +H+P+VI+VVGV
Sbjct: 65  IIERI-EKRVAKDKYINTDELNSILREEIAHLLTENNTTDTEGFSTPENHKPYVIMVVGV 123

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     +   +GSD A
Sbjct: 124 NGVGKTTTIGKLANQFKKAGKSVYLGAADTFRAAAVEQLVIWGERVGVPVIKQAMGSDPA 183

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++    A+A   DV+IIDTAGRLHN   LM  + K+ +V++++ P APH VL VLD 
Sbjct: 184 SVAFDTLSSAKANNADVVIIDTAGRLHNKVGLMNELTKIKKVMEKIVPEAPHEVLLVLDG 243

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA  Q   F A    T L +TK+DGTA+GG +I I    KIPV ++G+GEGI+DL+
Sbjct: 244 STGQNAFEQATQFTAATDVTALAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIDDLQ 303

Query: 300 PFVAKDFSAVITG 312
            F  K+F   + G
Sbjct: 304 VFTRKEFVDSLFG 316


>gi|312902148|ref|ZP_07761408.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0470]
 gi|311290812|gb|EFQ69368.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0470]
          Length = 442

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 254 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 313

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 314 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 374 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 431


>gi|227517301|ref|ZP_03947350.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0104]
 gi|227075308|gb|EEI13271.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0104]
          Length = 442

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 254 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 313

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 314 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 374 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 431


>gi|315151031|gb|EFT95047.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0012]
          Length = 442

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 254 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 313

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 314 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 374 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 431


>gi|316931782|ref|YP_004106764.1| signal recognition particle protein [Rhodopseudomonas palustris
           DX-1]
 gi|315599496|gb|ADU42031.1| signal recognition particle protein [Rhodopseudomonas palustris
           DX-1]
          Length = 514

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 140/305 (45%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL   +  +     L +   +    E+   L+ +D+ + V +   E +  +   
Sbjct: 2   FDNLSEKLGGILDRLTGRGALSEADVDAAMREIRRALLEADVALEVVRSFTERVREQAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++ +   L    +  + +    P  I++VG+ G GKTT   KL
Sbjct: 62  ATVVKSVKPGQMVVKIVNDELIATLGAEVQSIDLNAV-PPVPIMMVGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++M++    KV++A+ D +R AA++QL +     S D +    G     +A  A +  +
Sbjct: 121 ARRMTERDKRKVLMASLDVYRPAAMEQLAVLGRDLSIDTLPIVAGQQPPDIARRAMEAGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  +M    ++           PH VL V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRTTLDEEMMTEAAEIKAAAN------PHEVLLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE  + LE F     ++ I
Sbjct: 235 AFDQRVGLTGIVLTRIDGDGRGGAALSMRAVTGKPIKLMGTGEKTDALEDFHPSRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|254719813|ref|ZP_05181624.1| signal recognition particle protein [Brucella sp. 83/13]
 gi|265984832|ref|ZP_06097567.1| signal recognition particle protein [Brucella sp. 83/13]
 gi|306839510|ref|ZP_07472318.1| signal recognition particle protein [Brucella sp. NF 2653]
 gi|306841605|ref|ZP_07474302.1| signal recognition particle protein [Brucella sp. BO2]
 gi|306844807|ref|ZP_07477392.1| signal recognition particle protein [Brucella sp. BO1]
 gi|264663424|gb|EEZ33685.1| signal recognition particle protein [Brucella sp. 83/13]
 gi|306274979|gb|EFM56749.1| signal recognition particle protein [Brucella sp. BO1]
 gi|306288351|gb|EFM59714.1| signal recognition particle protein [Brucella sp. BO2]
 gi|306405455|gb|EFM61726.1| signal recognition particle protein [Brucella sp. NF 2653]
          Length = 523

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   LI +D+ + V +   + +  K   
Sbjct: 2   FETLQERLGSILNGLTGRGALSESDVTAALREVRRALIEADVSLEVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       + + +  P VI++VG+ G GKTT  GK+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELVEMLGTEGVAIDLN-APAPVVIMMVGLQGSGKTTTTGKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      +V++A+ DT R AA +QL+    +T  D +    G     +A  A + A+
Sbjct: 121 AKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDTLPIIAGQSPVEIARRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+  +  GE ++ LE F  K  +  I
Sbjct: 235 NFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLIATGEKMDALEEFYPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|227495312|ref|ZP_03925628.1| signal recognition particle [Actinomyces coleocanis DSM 15436]
 gi|226831182|gb|EEH63565.1| signal recognition particle [Actinomyces coleocanis DSM 15436]
          Length = 524

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 144/307 (46%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL +    +     + +   +    E+   L+ +D+ + V ++ V  +  K   
Sbjct: 2   FQNLSDKLTDSFKKLRGKGVITEADIDATASEIRRALLDADVALPVVRQFVSAVKEKALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V+      Q+V+  V + + ++L   ++  ++     P + ++ G+ G GKTT+ GKL
Sbjct: 62  ATVTQGLKPGQQVVRVVHDELVEILGGETRELHF-AQRGPTIFMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           +K M     +V+L A D  R  A++QL++   R   +    E G+   D   +A      
Sbjct: 121 AKWMRSENKRVLLVAADLQRPNAVNQLQVMGQRAGVEVWAPEPGNGVGDPVQVARTGVNH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A     D++I+DTAGRL  +  +M     +   +       PH VL VLDA  GQ+A++ 
Sbjct: 181 AIENGFDLVIVDTAGRLGIDEEMMQQARNIREAIN------PHEVLFVLDAMVGQDAVQT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G TG++++K+DG ARGG  + +      P+ F   GEG++D E F     ++
Sbjct: 235 SVAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGQPILFASTGEGLDDFERFHPDRMAS 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|198284460|ref|YP_002220781.1| signal recognition particle-docking protein FtsY [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198248981|gb|ACH84574.1| signal recognition particle-docking protein FtsY [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 343

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 113/303 (37%), Positives = 179/303 (59%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                +L +G A +  +L  G+  + +  + +D  + EELE LL+++D+G A  +++++ 
Sbjct: 37  KGLFSRLRQGLARSREQLAGGVGRLVLGKKVIDADLLEELEALLLQADLGSAATREVMDS 96

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  +    +++    L   + E +  +L P ++P++ +  H   V+L+VG+NG GKTT I
Sbjct: 97  VTERVRRNELTDPAALQAALRESLLDILRPRAQPWSPEKGHS-QVLLMVGINGAGKTTTI 155

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +    G  V+LAAGDTFR+AA++QL+ W  R     V    G+D+A++ ++A   
Sbjct: 156 GKLAARWKAEGFTVVLAAGDTFRAAAVEQLQGWGRRAQVPVVAQGTGADSASVIFDALTT 215

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+  D+LI DTAGRLH    LM  + K+ RVL + DP AP  +  VLDA TGQNAL Q
Sbjct: 216 TRARGSDLLIADTAGRLHTQGHLMEELKKIRRVLGKQDPEAPQQIWLVLDAGTGQNALNQ 275

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              FH   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGE + DL PF  + F  
Sbjct: 276 ARQFHDAVGLTGICITKLDGTAKGGVVAAIAKALPIPIRYIGVGEQVEDLRPFDPESFVD 335

Query: 309 VIT 311
            + 
Sbjct: 336 ALF 338


>gi|148560502|ref|YP_001259663.1| signal recognition particle protein [Brucella ovis ATCC 25840]
 gi|161619746|ref|YP_001593633.1| signal recognition particle protein [Brucella canis ATCC 23365]
 gi|163845404|ref|YP_001623059.1| signal recognition particle protein [Brucella suis ATCC 23445]
 gi|225628377|ref|ZP_03786411.1| signal recognition particle protein [Brucella ceti str. Cudo]
 gi|254703590|ref|ZP_05165418.1| signal recognition particle protein [Brucella suis bv. 3 str. 686]
 gi|254708323|ref|ZP_05170151.1| signal recognition particle protein [Brucella pinnipedialis
           M163/99/10]
 gi|254708825|ref|ZP_05170636.1| signal recognition particle protein [Brucella pinnipedialis B2/94]
 gi|254714665|ref|ZP_05176476.1| signal recognition particle protein [Brucella ceti M644/93/1]
 gi|254717563|ref|ZP_05179374.1| signal recognition particle protein [Brucella ceti M13/05/1]
 gi|256030351|ref|ZP_05443965.1| signal recognition particle protein [Brucella pinnipedialis
           M292/94/1]
 gi|256061847|ref|ZP_05451982.1| signal recognition particle protein [Brucella neotomae 5K33]
 gi|256370230|ref|YP_003107741.1| signal recognition particle protein [Brucella microti CCM 4915]
 gi|260168024|ref|ZP_05754835.1| signal recognition particle protein [Brucella sp. F5/99]
 gi|260568896|ref|ZP_05839364.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261219397|ref|ZP_05933678.1| signal recognition particle protein [Brucella ceti M13/05/1]
 gi|261315822|ref|ZP_05955019.1| signal recognition particle protein [Brucella pinnipedialis
           M163/99/10]
 gi|261316318|ref|ZP_05955515.1| signal recognition particle protein [Brucella pinnipedialis B2/94]
 gi|261322459|ref|ZP_05961656.1| signal recognition particle protein [Brucella ceti M644/93/1]
 gi|261325854|ref|ZP_05965051.1| signal recognition particle protein [Brucella neotomae 5K33]
 gi|261754225|ref|ZP_05997934.1| signal recognition particle protein [Brucella suis bv. 3 str. 686]
 gi|261757471|ref|ZP_06001180.1| signal recognition particle protein [Brucella sp. F5/99]
 gi|265987387|ref|ZP_06099944.1| signal recognition particle protein [Brucella pinnipedialis
           M292/94/1]
 gi|294851065|ref|ZP_06791741.1| signal recognition particle protein [Brucella sp. NVSL 07-0026]
 gi|148371759|gb|ABQ61738.1| signal recognition particle protein [Brucella ovis ATCC 25840]
 gi|161336557|gb|ABX62862.1| signal recognition particle protein [Brucella canis ATCC 23365]
 gi|163676127|gb|ABY40237.1| signal recognition particle protein [Brucella suis ATCC 23445]
 gi|225616223|gb|EEH13271.1| signal recognition particle protein [Brucella ceti str. Cudo]
 gi|256000393|gb|ACU48792.1| signal recognition particle protein [Brucella microti CCM 4915]
 gi|260154280|gb|EEW89362.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|260924486|gb|EEX91054.1| signal recognition particle protein [Brucella ceti M13/05/1]
 gi|261295149|gb|EEX98645.1| signal recognition particle protein [Brucella ceti M644/93/1]
 gi|261295541|gb|EEX99037.1| signal recognition particle protein [Brucella pinnipedialis B2/94]
 gi|261301834|gb|EEY05331.1| signal recognition particle protein [Brucella neotomae 5K33]
 gi|261304848|gb|EEY08345.1| signal recognition particle protein [Brucella pinnipedialis
           M163/99/10]
 gi|261737455|gb|EEY25451.1| signal recognition particle protein [Brucella sp. F5/99]
 gi|261743978|gb|EEY31904.1| signal recognition particle protein [Brucella suis bv. 3 str. 686]
 gi|264659584|gb|EEZ29845.1| signal recognition particle protein [Brucella pinnipedialis
           M292/94/1]
 gi|294821708|gb|EFG38704.1| signal recognition particle protein [Brucella sp. NVSL 07-0026]
          Length = 523

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   LI +D+ + V +   + +  K   
Sbjct: 2   FETLQERLGSILNGLTGRGALSESDVTAALREVRRALIEADVSLEVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       + + +  P VI++VG+ G GKTT  GK+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELVEMLGTEGVAIDLN-APAPVVIMMVGLQGSGKTTTTGKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      +V++A+ DT R AA +QL+    +T  D +    G     +A  A + A+
Sbjct: 121 AKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDTLPIIAGQSPVEIARRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+  +  GE ++ LE F  K  +  I
Sbjct: 235 NFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLIATGEKMDALEEFYPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|149371680|ref|ZP_01891096.1| signal recognition particle protein [unidentified eubacterium
           SCB49]
 gi|149355307|gb|EDM43867.1| signal recognition particle protein [unidentified eubacterium
           SCB49]
          Length = 442

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL + +  +     + +       +E+   L+ +D+   +A++    +  K   
Sbjct: 2   FDNLSDKLDKAMHVLKGHGSITEVNVAETLKEVRRALLDADVNFKIAKEFTNTVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  V + +  ++   +   N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QDVLTALQPSQLMVKIVKDELTALMGGDAAGVNLQGS--PSVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAI+QL +  ++   +    E   D  ++A  A   A+
Sbjct: 120 ANFLKSKKTKKPLLVACDVYRPAAINQLHVVGEQIGVEVYSEEGNMDPVSIATNAIAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRL  +  +M  I  + + ++      P   L V+DA TGQ+A+   +
Sbjct: 180 QNGHNVVIVDTAGRLAVDEAMMVEIENVHKAIQ------PQETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  I I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 TFNERINFDGVVLTKLDGDTRGGAAISIKSVVNKPIKFIGTGEKMDAIDIFYPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|119025229|ref|YP_909074.1| signal recognition particle protein [Bifidobacterium adolescentis
           ATCC 15703]
 gi|118764813|dbj|BAF38992.1| signal recognition particle protein [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 549

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTSRIRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 62  LGTEVSEALNPAQQVVKIVNEELTAVLGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CS 172
           GKL   + D+G   +L A D  R  A+ QL++  +R                        
Sbjct: 121 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVVSPG 180

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +   D   +A +A + A+ K  D +IIDTAGRL  +  LM     +       D   P+ 
Sbjct: 181 QTTGDPVKVARDAVELAKQKLYDTVIIDTAGRLGVDEELMKQARDI------RDAVQPNE 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 235 ILFVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTG 294

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 295 EGLKDFEVFHPDRMASRILDMGD 317


>gi|23502679|ref|NP_698806.1| signal recognition particle protein [Brucella suis 1330]
 gi|23348690|gb|AAN30721.1| signal recognition particle protein [Brucella suis 1330]
          Length = 523

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   LI +D+ + V +   + +  K   
Sbjct: 2   FETLQERLGSILNGLTGRGALSESDVTAALREVRRALIEADVSLEVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       + + +  P VI++VG+ G GKTT  GK+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELVEMLGTEGVAIDLN-APAPVVIMMVGLQGSGKTTTTGKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      +V++A+ DT R AA +QL+    +T  D +    G     +A  A + A+
Sbjct: 121 AKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDTLPIIAGQSPVEIARRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+  +  GE ++ LE F  K  +  I
Sbjct: 235 NFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLIATGEKMDALEEFYPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|319791708|ref|YP_004153348.1| signal recognition particle protein [Variovorax paradoxus EPS]
 gi|315594171|gb|ADU35237.1| signal recognition particle protein [Variovorax paradoxus EPS]
          Length = 462

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 140/302 (46%), Gaps = 17/302 (5%)

Query: 24  TSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            + K    +  +    R+ +     +  E+   L+ +D+ + V +  V  +  K   ++V
Sbjct: 5   LTEKFSRLVKTMSGQARITESNVQDMLREVRMALLEADVALPVVRDFVARVKEKALGQEV 64

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                  Q ++  V+  +   +       N   +  P VIL+ G+ G GKTT   KL+K 
Sbjct: 65  LGSLKPGQALVGIVNRELAATMGEGVSDINL-AAQPPAVILMAGLQGAGKTTTTAKLAKH 123

Query: 135 MSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           + +    KV+  +GD +R AAI+QLK    +  A++  S        +A  A   A+   
Sbjct: 124 LIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAGAEWFPSTPDQKPLDIARAALDHAKRHY 183

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DVL++DTAGRL  + +LM  I ++   L       P   L V+DA  GQ+A+   + F 
Sbjct: 184 FDVLLVDTAGRLAIDEVLMTEIKQLHAALD------PVETLFVVDAMQGQDAINTAKAFK 237

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                TG+I+TK DG +RGG  + +     +P+ F G  E I+ LE F A+  +  I G 
Sbjct: 238 EALPLTGIILTKTDGDSRGGAALSVRQVTGVPIKFAGTSEKIDGLEVFDAERHAGRILGM 297

Query: 314 LD 315
            D
Sbjct: 298 GD 299


>gi|297180323|gb|ADI16541.1| hypothetical protein [uncultured bacterium HF4000_009C18]
          Length = 304

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 130/302 (43%), Positives = 190/302 (62%), Gaps = 1/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   K   G + +S  L  G+ D+I  +++D+ +  ELED LI+SD+GV  A+++ E+ 
Sbjct: 1   MSIFDKFKLGLSKSSKNLSSGLNDLIFKKKIDENMLNELEDFLIQSDVGVESAKELREKF 60

Query: 71  L-TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             TK   K V    +    S  +H++L PL K       ++P VIL+ GVNGVGKTT IG
Sbjct: 61  ANTKVNPKTVEKDEIFKIFSNYVHEILKPLEKNLENINKNKPCVILIAGVNGVGKTTTIG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL K +     K++L A DTFR+AA+ QL++WA R +AD + S+ G+D A++AY+A   A
Sbjct: 121 KLGKILGQNNKKIVLGAADTFRAAAVSQLEVWAKRINADIIKSDEGADPASVAYKALDHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D L+IDTAGRL N   LM    K+ +VLK++D +APH    +LDATTGQNA+ QV
Sbjct: 181 KKNNFDYLLIDTAGRLQNKKNLMDEFKKITKVLKKIDSNAPHETFLILDATTGQNAISQV 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F  ++  TG+IMTK+DGTA+GG L+ I    K+P+  L +GE  +DL+ F ++ FS  
Sbjct: 241 EEFKKISPITGIIMTKLDGTAKGGILLAIGKKFKLPIIALCMGEKEDDLQTFNSEYFSNA 300

Query: 310 IT 311
           + 
Sbjct: 301 LM 302


>gi|32477733|ref|NP_870727.1| signal recognition particle protein [Rhodopirellula baltica SH 1]
 gi|32448287|emb|CAD77804.1| signal recognition particle protein [Rhodopirellula baltica SH 1]
 gi|327537880|gb|EGF24580.1| signal recognition particle protein [Rhodopirellula baltica WH47]
          Length = 491

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 144/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREEL---EDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S  L+     +    +L +  +R+ L   E  L+ +D+  +V +  +  +  K   
Sbjct: 2   FDSLSDGLQSAFKSLSGKGKLTEGNMRDGLKIVEQSLLEADVSYSVVKDFMGHVSEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V       + ++  V + + + L P+    N   +  P +I++ G+ G GKTT  GKL
Sbjct: 62  KRVLLSLRPQEELVRIVYDELVETLGPVDSALNLK-ADGPTIIMLCGLQGSGKTTTCGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K + +  +  +L A D  R AAI+QLK+   +            D   +     + A+ 
Sbjct: 121 TKLLQEQNITPLLVAADLQRPAAIEQLKVIGSQLGVPVHAETDHKDPVKVCQAGVEMARR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
               V+I+DTAGRL  ++ LMA + K+ R         P  V  V+D  TGQ+A+     
Sbjct: 181 DGNRVVILDTAGRLAIDAELMAELKKIDR------KVGPDQVYLVVDGMTGQDAVNSAGA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G++MTK+DG ARGG L+ +     +P+ F+G GE  + LEPF  +  ++ I 
Sbjct: 235 FNDALELDGVVMTKLDGDARGGALLSVKQVTGVPIKFMGTGEHFDALEPFRPEGMASRIL 294

Query: 312 GCLDY 316
              D 
Sbjct: 295 QMGDM 299


>gi|124515715|gb|EAY57224.1| Cell division protein (FtsY) [Leptospirillum rubarum]
          Length = 309

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 115/304 (37%), Positives = 169/304 (55%), Gaps = 6/304 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           ++ +++L  G   T  KL   +  +    R      EELEDLLI SD+G   A  ++ +L
Sbjct: 1   MNILQRLGAGLKKTREKLGNNLAQLFGKER-SPQFYEELEDLLILSDVGPEQATLLIRDL 59

Query: 71  L--TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTV 127
               K          +L+   E       PL+ P   +    +P VIL+VGVNGVGKTT 
Sbjct: 60  KDWEKNSGNGTKGDPLLF--LEERIASFFPLNPPVWVEQPDWKPVVILMVGVNGVGKTTT 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+ +    G  V+L A DTFR+AA+ QL++W ++     V  + G+D AA+A++  K
Sbjct: 118 TGKLAHRFQQDGKSVILGAADTFRAAAVQQLRLWGEKLEIPVVHQKEGADPAAVAFDTVK 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A+KVDV IIDTAGRL     LMA +GK+  ++KR     P   L VLD+T GQN + 
Sbjct: 178 AALARKVDVAIIDTAGRLQTKHNLMAELGKIHGLVKREMEDRPFETLIVLDSTLGQNTVS 237

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+E F      +G+I+TK+DGT++GG ++ +     +PV F+GVGEG +DL  F    ++
Sbjct: 238 QMEHFRKAIPVSGMILTKLDGTSKGGIVVSLARKFHLPVRFVGVGEGKDDLVEFDPVLYA 297

Query: 308 AVIT 311
             + 
Sbjct: 298 RALL 301


>gi|288800175|ref|ZP_06405634.1| signal recognition particle protein [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288333423|gb|EFC71902.1| signal recognition particle protein [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 446

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 142/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETLKDVRRALLDADVNFKVAKNFTDTVKQKAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++   +       +  P +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPSQLMVKIVHDELAELMGGETAEVKL--TGHPSIILMSGLQGSGKTTFTGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L A D +R AAI+QL +  ++            +   +A    ++A+
Sbjct: 120 ANLLKTKQNKKPLLVACDVYRPAAIEQLMVVGEQIGVPVYSEIENKNVVEIAQHGIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV++IDTAGRL  +  +M  I K+   ++      P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGYDVVLIDTAGRLAIDEEMMNEISKLKESVQ------PTETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFVGTGEKMEAIDLFHPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|301168359|emb|CBW27949.1| cell division protein [Bacteriovorax marinus SJ]
          Length = 425

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 116/308 (37%), Positives = 175/308 (56%), Gaps = 7/308 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +SW  +L KG + +S ++   I  I + + LDD   EE+E+LL  +DIG  +A +++E L
Sbjct: 115 ISWRDRLRKGLSRSSSEVWGKIGAIFTGKGLDDDTLEEVEELLYGADIGPTIAVELIEGL 174

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-------PFNWDFSHRPHVILVVGVNGVG 123
             +        +     +   +   +  +          FN     +  VI+VVGVNG G
Sbjct: 175 EEEAKKDGFGEKEFKKYLKTFLDSKMNGVQATVDSDLYKFNEANRGKTKVIMVVGVNGAG 234

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K++  G KV++ A DTFR+AA+DQL++W  R  A  + ++ G++ + + Y
Sbjct: 235 KTTTIGKLATKLTAQGAKVVVGACDTFRAAAVDQLEVWCQRAGAQMIRAKEGANPSGVGY 294

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A  +  D  I+DTAGRLH    LM  + K   VLK+LD  APH  L V+DA TGQ
Sbjct: 295 DALQTAINEGADYCILDTAGRLHTKGNLMEELKKSRDVLKKLDDSAPHQTLLVIDAITGQ 354

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NALRQ E F+   G +GLI TK DG+++ G  I IV   K+P+ ++GVGE + DL  F  
Sbjct: 355 NALRQAEEFNNTLGLSGLIFTKCDGSSKAGSAIGIVDKLKVPIAYIGVGEQVEDLNIFNL 414

Query: 304 KDFSAVIT 311
            ++   + 
Sbjct: 415 SEYLDALL 422


>gi|319941756|ref|ZP_08016078.1| ffh protein [Sutterella wadsworthensis 3_1_45B]
 gi|319804689|gb|EFW01556.1| ffh protein [Sutterella wadsworthensis 3_1_45B]
          Length = 473

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + S +L + +  +    RL +     +  E+   L+ +D+ + V ++++  +  K   
Sbjct: 2   LDNLSQRLSKIVKTMRGQARLTEANTKEMLREVRLALLEADVALPVVKEVLSRIKEKAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V   +  ++     P     +     P VIL+ G+ G GKTT  
Sbjct: 62  EEVVGNLNPGQALVGVVQRELTAIIGGDLPPEERSLNFRVQPPAVILLAGLQGAGKTTTA 121

Query: 129 GKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL++ +      KV+  + D +R AAIDQLK   ++  AD+  S  G     +A  A  
Sbjct: 122 GKLARWLVHDEKKKVLTVSCDVYRPAAIDQLKAVTEQAGADWFPSHTGEKPLDIAAAAVS 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+ +  DVLI+DTAGRL  + ++M  +  +   LK          L V+DA  GQ+A+ 
Sbjct: 182 EARRRFYDVLIVDTAGRLAIDEVMMQEVADLNTFLKPA------ETLFVIDAMLGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK DG +RGG  + +      P+ F+G GE +   EPF  +  +
Sbjct: 236 TAKAFNDRLPLTGIVLTKADGDSRGGASLSVRYVTGKPIKFIGTGEKLGGFEPFDPEAMA 295

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 296 SRILGMGD 303


>gi|256854769|ref|ZP_05560133.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T8]
 gi|256962932|ref|ZP_05567103.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis HIP11704]
 gi|257080503|ref|ZP_05574864.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis E1Sol]
 gi|257083239|ref|ZP_05577600.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis Fly1]
 gi|257088209|ref|ZP_05582570.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis D6]
 gi|257091334|ref|ZP_05585695.1| cell division transporter substrate-binding protein ftsY
           [Enterococcus faecalis CH188]
 gi|257417940|ref|ZP_05594934.1| cell division transporter substrate-binding protein ftsY
           [Enterococcus faecalis T11]
 gi|256710329|gb|EEU25373.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T8]
 gi|256953428|gb|EEU70060.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis HIP11704]
 gi|256988533|gb|EEU75835.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis E1Sol]
 gi|256991269|gb|EEU78571.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis Fly1]
 gi|256996239|gb|EEU83541.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis D6]
 gi|257000146|gb|EEU86666.1| cell division transporter substrate-binding protein ftsY
           [Enterococcus faecalis CH188]
 gi|257159768|gb|EEU89728.1| cell division transporter substrate-binding protein ftsY
           [Enterococcus faecalis T11]
          Length = 331

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 23  EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 82

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 83  VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 142

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 143 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 202

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 203 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 262

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 263 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 320


>gi|310658886|ref|YP_003936607.1| signal recognition particle-docking protein ftsy [Clostridium
           sticklandii DSM 519]
 gi|308825664|emb|CBH21702.1| Signal recognition particle-docking protein FtsY [Clostridium
           sticklandii]
          Length = 413

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 119/310 (38%), Positives = 192/310 (61%), Gaps = 2/310 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           +++   ++L +  KL +G + T+  L   + ++      +D+ + EE+E++LI  D+G  
Sbjct: 102 DEEQPQKNLGFFAKLKEGLSKTTQNLTGKLDELFKGHIEIDEELYEEIEEILITGDVGFE 161

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              KIV+ L      K +   + + +  +LI + ++      N     +P ++++VGVNG
Sbjct: 162 TTLKIVDMLRKNVKKKSIQDVKDVREELKLIVEEILSGDDS-NLKLEPKPAILVIVGVNG 220

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGK++ ++   G  V+LAAGDTFR+AA +QL++WADR   + +  + GSD +A+
Sbjct: 221 VGKTTSIGKIAMRLKSEGKSVLLAAGDTFRAAAAEQLEVWADRAGVELIKHQEGSDPSAV 280

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A   A+A+  DVLI DTAGRLHN   LM  + K+ R++ R  P A   VL V+DATT
Sbjct: 281 IFDAISGAKARNTDVLICDTAGRLHNKKNLMQELAKIFRIIDREYPEATKEVLLVIDATT 340

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ QV++F   A  TG+I+TK+DGTA+GG ++ I    ++P+  +GVGE I DL+ F
Sbjct: 341 GQNAINQVKIFKEAAPLTGIILTKLDGTAKGGVVLSIKSEQQLPIKLIGVGEKIEDLQDF 400

Query: 302 VAKDFSAVIT 311
            AK+F+  + 
Sbjct: 401 NAKEFAKALF 410


>gi|237745294|ref|ZP_04575775.1| signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp.
           7_1]
 gi|229432523|gb|EEO42735.1| signal recognition particle, subunit FFH/SRP54 [Fusobacterium sp.
           7_1]
          Length = 444

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + ++    I    +L +        E++  L+ +D+   V +    ++  K   
Sbjct: 2   LENLGNRFQDIFKKIRGHGKLSETNIKDALREVKMSLLEADVNYKVVKDFTNKISEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V++ + ++L   S        + P +I++ G+ G GKTT   KL
Sbjct: 62  TEVIRGVNPAQQFIKLVNDELVELLGGTSSKLTKGLRN-PTIIMLAGLQGAGKTTFAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +     K++L   D +R AAI QL++   +   D    E   D   +A  A ++A+ 
Sbjct: 121 AKFLKKQNEKLLLVGVDVYRPAAIKQLQVLGQQIGVDVYSEENSKDVVGIATRAIEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +I+DTAGRLH + ILM  + ++ + +K      P  +L V+DA  GQ+A+   E 
Sbjct: 181 INATYMIVDTAGRLHVDEILMEELKELKKAIK------PQEILLVVDAMIGQDAVNLAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+I+TK+DG   GG  + I      P+ F+GVGE +ND+E F      + I 
Sbjct: 235 FNNALSVDGVILTKLDGDTHGGAALSIKAVVGKPIKFIGVGEKLNDIEIFHPDRLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|15893128|ref|NP_360842.1| cell division protein ftsY [Rickettsia conorii str. Malish 7]
 gi|81527868|sp|Q92GB8|FTSY_RICCN RecName: Full=Cell division protein ftsY homolog
 gi|15620335|gb|AAL03743.1| cell division protein ftsY [Rickettsia conorii str. Malish 7]
          Length = 303

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 129/303 (42%), Positives = 190/303 (62%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD G  EELE+LLI SD+ V V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAGTLEELEELLISSDMSVLVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L   + PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAKLIEQQLSKSAIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AA++QL  WADR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LASMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+DA TGQN   QVE
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVIDAITGQNTYNQVE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  +
Sbjct: 241 HFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARNL 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|268319232|ref|YP_003292888.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii
           FI9785]
 gi|262397607|emb|CAX66621.1| signal recognition particle receptor FtsY [Lactobacillus johnsonii
           FI9785]
          Length = 442

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 105/295 (35%), Positives = 171/295 (57%), Gaps = 6/295 (2%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   T+      +    +  R +D+   ++LEDLLI SD+G   A+++ + L  +   +
Sbjct: 140 KGLEKTNHSFGARLNAFFAKFRTVDENFFDDLEDLLIESDVGFETAEELTDSLRDEAKLQ 199

Query: 78  DVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +        Q ++  + ++  K           D S +P+V L VGVNG GKTT IGKL+
Sbjct: 200 NAKSHDALKQVIVEKLVDIYDKGGEGEDSKLADDPSAKPNVYLFVGVNGAGKTTTIGKLA 259

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K++ D+G  VM+ A DTFR+ A++QL  W  R   + +     +D A++ Y+  K+A+ +
Sbjct: 260 KRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVEVITGPEKADPASVVYDGVKKAKER 319

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +D L++DTAGRL N   LM+ + K+ R +K++ P  P+ VL VLD +TGQNAL Q + F
Sbjct: 320 GIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPDQPNEVLLVLDGSTGQNALLQAKDF 379

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 TGL++TK+DG+++GG ++ I     +PV  +G+GE ++DL  F A+ F+
Sbjct: 380 DKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKLVGLGEKVDDLANFDAEKFA 434


>gi|284032661|ref|YP_003382592.1| signal recognition particle protein [Kribbella flavida DSM 17836]
 gi|283811954|gb|ADB33793.1| signal recognition particle protein [Kribbella flavida DSM 17836]
          Length = 537

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 145/320 (45%), Gaps = 22/320 (6%)

Query: 11  LSWIRK--LTKGFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQ 64
           L +  +  L   F + S +L     ++    +L D   +    E+   L+ +D+ + V +
Sbjct: 2   LGFTERNGLFLVFDTLSDRLSAAFKNLRGKGKLTDADIDATAREIRIALLEADVALPVVK 61

Query: 65  KIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + +  +  +    +V       Q+V+  V+E +  +L   ++         P VI++ G+
Sbjct: 62  EFIAAVKERASGAEVRGGLNPAQQVIKIVNEELVTILGGATRELRM-AKKPPTVIMLAGL 120

Query: 120 NGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-- 176
            G GKTT+ GKL+K +        ML A D  R  A+ QL++   R        E G+  
Sbjct: 121 QGAGKTTLAGKLAKWLKETRHQTPMLVAADLQRPNAVTQLQVVGQRAGVPVFAPEPGNGV 180

Query: 177 -DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D   +A  A  +A+ K+  V+I+DTAGRL  +  LM     +       D  +P  +L 
Sbjct: 181 GDPVEVARRAMDEARTKQHSVVIVDTAGRLGVDEELMKQAADI------RDAVSPDEILF 234

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DA  GQ+A+   + F    G  G++++K+DG ARGG  + I       V F   GE +
Sbjct: 235 VVDAMIGQDAVTTAQAFLDGVGFDGVVLSKLDGDARGGAALSIAQVTGRQVMFASNGEKL 294

Query: 296 NDLEPFVAKDFSAVITGCLD 315
            D + F     ++ I G  D
Sbjct: 295 EDFDVFHPDRMASRILGMGD 314


>gi|261419393|ref|YP_003253075.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           Y412MC61]
 gi|319766208|ref|YP_004131709.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           Y412MC52]
 gi|261375850|gb|ACX78593.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           Y412MC61]
 gi|317111074|gb|ADU93566.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           Y412MC52]
          Length = 328

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 185/311 (59%), Gaps = 6/311 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K   ++ +   K  +G + T   L   + D+I+  R++D+   EELE++LI +D+GV 
Sbjct: 8   KEKWTKQADAVTEKFKEGLSKTRNSLAGKVNDLIARYRKVDEEFFEELEEILIAADVGVT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF----SHRPHVILV 116
              ++V+EL  +   +++     + DV +E +  +    +                VIL 
Sbjct: 68  TVMELVDELKMEVKRRNIQDPAQMRDVIAEKLVDIYRAGADDKELSALNIQEGGLTVILF 127

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ K+   G  V+LAAGDTFR+ AI+QL+ W +R   D +    GS
Sbjct: 128 VGVNGVGKTTTIGKLAHKLKSEGKSVLLAAGDTFRAGAIEQLEAWGERVGVDVIKQAAGS 187

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV+ R  P APH VL V
Sbjct: 188 DPAAVMYDAIQAAKARGVDVLLCDTAGRLQNKVNLMKELEKVKRVISREIPGAPHEVLLV 247

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q ++F      TG+++TK+DGTA+GG ++ I     IPV  +G+GE ++
Sbjct: 248 LDATTGQNAMSQAKLFKEATDVTGIVLTKLDGTAKGGIVLAIRNEMAIPVKLVGLGEKMD 307

Query: 297 DLEPFVAKDFS 307
           DL+ F  + + 
Sbjct: 308 DLQVFDPEQYV 318


>gi|221194823|ref|ZP_03567880.1| signal recognition particle-docking protein FtsY [Atopobium rimae
           ATCC 49626]
 gi|221185727|gb|EEE18117.1| signal recognition particle-docking protein FtsY [Atopobium rimae
           ATCC 49626]
          Length = 301

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 177/305 (58%), Gaps = 7/305 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + ++  L +G   +     E I +I      + +   ++LED L+  D+G  VA ++ + 
Sbjct: 1   MGFMDNLRRGLERSR----ETINEIFYMGGEVTEDFWDDLEDTLVMGDMGAEVAIRVTDH 56

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +   ++++    L   S LI ++     +     F   P ++L VG+NG GKTT +G
Sbjct: 57  LREQAAKENLTRSHQLR--SALIERLSEEFPRASRDPFVDTPSIVLFVGINGAGKTTTVG 114

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G++V++   DTFR+AAI+QL++W  R+  + V  E G+D A++ Y+  ++A
Sbjct: 115 KLAGRAQSDGVRVLIGGADTFRAAAIEQLEVWGSRSGVEVVTRERGADPASVCYDVIEEA 174

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  ++++IDTAGRLH +S LM  + K++ V ++     P SV+ V+DATTGQN L Q 
Sbjct: 175 EKRGSELVLIDTAGRLHTSSDLMRELAKVVSVTRKRAGITPVSVVLVIDATTGQNGLNQA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+      GLI+TK+DGTA+GG  + I     +P+Y +GVGE I+DL+ F A DF A 
Sbjct: 235 KEFNDALDLDGLIVTKLDGTAKGGIALAISHQLNLPIYRIGVGESIDDLQTFDAHDFCAA 294

Query: 310 ITGCL 314
           + G  
Sbjct: 295 LVGEG 299


>gi|325294068|ref|YP_004279932.1| signal recognition particle protein [Agrobacterium sp. H13-3]
 gi|325061921|gb|ADY65612.1| signal recognition particle protein [Agrobacterium sp. H13-3]
          Length = 523

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   L+ +D+ + V +   +++  K   
Sbjct: 2   FENLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + + +ML       +   +  P VI++VG+ G GKTT  GK+
Sbjct: 62  AAVLKSIKPGQMVVKIVHDELVEMLGTEGVSIDLHAAA-PVVIMMVGLQGSGKTTTTGKI 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+++D    KV++A+ DT R AA +QL+    +T  D +    G     +A  A + A+
Sbjct: 121 AKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPVIAGQSPTDIAARAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGGHDVVILDTAGRTHIDEPLMLEMADIKK------KSNPHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T+MDG  RGG  + +      P+  +G+GE +N+L+ F  +  +  I
Sbjct: 235 NFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|298345305|ref|YP_003717992.1| signal recognition particle subunit SRP54 [Mobiluncus curtisii ATCC
           43063]
 gi|304390862|ref|ZP_07372814.1| signal recognition particle protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298235366|gb|ADI66498.1| signal recognition particle subunit SRP54 [Mobiluncus curtisii ATCC
           43063]
 gi|304325745|gb|EFL92991.1| signal recognition particle protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 557

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 145/309 (46%), Gaps = 19/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L E   ++    +L D   +    ++   LI +D+ + V +     +  K Y 
Sbjct: 2   FNNLQDRLTESFKNLRKKGKLKDSDVDATVSDIRRALIEADVALEVVKDFTATVKEKAYG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
              S      Q+++  V++ +  +L    +  ++    + P V ++ G+ G GKTT+ GK
Sbjct: 62  AARSEALNPAQQIVKIVNDELINILGGEDRELHFSKPGKGPTVFMLAGLQGAGKTTLAGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L K ++    KV+L A D  R  A++QL+I  ++        E G+   D   +A  A  
Sbjct: 122 LGKWLAKENRKVLLVAADLQRPNAVNQLQIVGEQAGVTVFAPEPGNGVGDPVDVARRALA 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A     DV+I+DTAGRL  +  LMA    +       D   P  VL VLDA  GQ+A+R
Sbjct: 182 LASGSGYDVMIVDTAGRLGVDEELMAQARSI------RDEVQPDEVLFVLDAMIGQDAVR 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F      TG+++TK+DG ARGG  + +     +PV F   GEG++D E F A   +
Sbjct: 236 TARAFQEGVDFTGVVLTKLDGDARGGAALSVRGVTGVPVLFASTGEGLDDFERFHADRMA 295

Query: 308 AVITGCLDY 316
           + I    D 
Sbjct: 296 SRILDMGDL 304


>gi|225848834|ref|YP_002728998.1| signal recognition particle protein [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643694|gb|ACN98744.1| signal recognition particle protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 442

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + K    I  +  ++++D+   +E    +   L+ +D+ V V +K + ++  K   
Sbjct: 2   FELLTEKFSSVIDKLRKAKKIDEKTLDEALKDIRTALLEADVNVDVVKKFIADIKQKVLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++     + + V+  + +    +L     P        P +I++VG+ G GKTT  GKL
Sbjct: 62  QELIKGLSAGETVIKLIYDETINILGGEEPPTLAKPDKPPAIIMLVGLQGTGKTTTAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G +V +A+ D  R AA  QL   A          E   DA  L  +  + A+ 
Sbjct: 122 AKYLKSKGYRVGVASTDVRRPAAAKQLCTLAQSIDVPCFVDEQEKDALKLTEKVIEDAKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +    +I+DTAGRLH +  LM  + ++   +K         VL V DA  GQ A+   E 
Sbjct: 182 QGFSYIILDTAGRLHIDQELMEELKQIKEKVKPA------EVLYVADAMQGQEAITTAEE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG+I+TK+DG A+GG  + +     IP+ F+G GE I DL+ F     +  I 
Sbjct: 236 FHKAVGLTGVILTKLDGDAKGGIALSVRQVLGIPIKFVGTGEKIEDLDLFYPDRIAQRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GLGD 299


>gi|296328238|ref|ZP_06870768.1| cell division protein FtsY [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154638|gb|EFG95425.1| cell division protein FtsY [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 333

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 115/297 (38%), Positives = 180/297 (60%), Gaps = 3/297 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +++    +       + +I +S+ ++DD + EELEDLL++SD+G+ +   ++ +L  +  
Sbjct: 37  ISQRLTKSKEGFFSKLKNIFTSKSKVDDSIYEELEDLLLQSDVGLNMTTNLINQLEKEVK 96

Query: 76  AKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           +  V     +Y  +  L+ + L+           ++ +VIL+VGVNGVGKTT IGKL+ K
Sbjct: 97  SNKVDNTEEVYEILKRLMSEFLLSQDSKIYLK-DNKINVILIVGVNGVGKTTTIGKLALK 155

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             + G KV+L AGDTFR+AA++QL+ WA R   D +    G+D A++ Y+   +A+A K 
Sbjct: 156 YKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIIKGREGADPASVVYDTLSRAEATKA 215

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++IIDTAGRLHN + LM  + K+  ++K+      +  L V+D TTGQN L Q + F++
Sbjct: 216 DIVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAKEFNS 275

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL  F AKDF   I 
Sbjct: 276 VTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLIEFNAKDFVEAIF 332


>gi|227545808|ref|ZP_03975857.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227213924|gb|EEI81763.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 582

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 148/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +    ++  + 
Sbjct: 34  AAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERA 93

Query: 75  YAKDVSV-----QRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 94  LGTEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 152

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CS 172
           GKL   + D+G   +L A D  R  A+ QL++  +R                        
Sbjct: 153 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPG 212

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +   D   +A ++ + A+ K  D +IIDTAGRL  +  LM     +       D   P+ 
Sbjct: 213 QTSGDPVKVARDSIELAKQKLYDTVIIDTAGRLGVDEELMKQARDI------RDAVRPNE 266

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 267 ILFVIDAMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNG 326

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 327 EGLKDFEVFHPDRMASRILDMGD 349


>gi|19704409|ref|NP_603971.1| Signal recognition particle receptor FtsY [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|19714667|gb|AAL95270.1| Signal recognition particle receptor FtsY [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 333

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 115/297 (38%), Positives = 180/297 (60%), Gaps = 3/297 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +++    +       + +I +S+ ++DD + EELEDLL++SD+G+ +   ++ +L  +  
Sbjct: 37  ISQRLTKSKEGFFSKLKNIFTSKSKVDDSIYEELEDLLLQSDVGLNMTTNLINQLEKEVK 96

Query: 76  AKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           +  V     +Y  +  L+ + L+           ++ +VIL+VGVNGVGKTT IGKL+ K
Sbjct: 97  SNKVDNTEEVYEILKRLMSEFLLSQDSKIYLK-DNKINVILIVGVNGVGKTTTIGKLALK 155

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             + G KV+L AGDTFR+AA++QL+ WA R   D +    G+D A++ Y+   +A+A K 
Sbjct: 156 YKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIIKGREGADPASVVYDTLSRAEATKA 215

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++IIDTAGRLHN + LM  + K+  ++K+      +  L V+D TTGQN L Q + F++
Sbjct: 216 DIVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAKEFNS 275

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL  F AKDF   I 
Sbjct: 276 VTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLIEFNAKDFVEAIF 332


>gi|296111747|ref|YP_003622129.1| signal recognition particle receptor FtsY [Leuconostoc kimchii
           IMSNU 11154]
 gi|295833279|gb|ADG41160.1| signal recognition particle receptor FtsY [Leuconostoc kimchii
           IMSNU 11154]
          Length = 454

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 116/297 (39%), Positives = 173/297 (58%), Gaps = 11/297 (3%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   +           +++ R +D+   E+LE+ L+ +D+G  +A KI +EL  +    
Sbjct: 152 KGLEKSRTGFAARFNRFLANFRSVDEDFFEDLEETLVGADVGFDMAIKISDELREEVK-- 209

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDF-------SHRPHVILVVGVNGVGKTTVIGK 130
            +   +   DV ++I K ++ + +    D        S+   VIL+VGVNGVGKTT IGK
Sbjct: 210 -LENAKHKEDVRDVIIKKMVDMYEADGVDEDATMHFNSNGTTVILLVGVNGVGKTTTIGK 268

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS K    G  V+LAA DTFR+ A  QL+ W  R     V  +  +D A++ +EA  +A+
Sbjct: 269 LSTKYQQQGKSVLLAAADTFRAGATKQLQEWGQRAGVPVVSGKEKADPASVVFEAVTKAR 328

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            ++ DVL +DTAGRL NN  LM  + KM R+++R  P APH VL VLDATTGQNAL+Q +
Sbjct: 329 DEQFDVLFVDTAGRLQNNVNLMQELEKMKRIIQREIPGAPHEVLLVLDATTGQNALQQAK 388

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           +F   +  +G+++TKMDGTA+GG +  I     +PV ++G GE  +DL  F  ++F 
Sbjct: 389 LFKDSSDVSGIVLTKMDGTAKGGIVFAIRNEMHLPVKWVGFGEKASDLREFKPEEFI 445


>gi|315171220|gb|EFU15237.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX1342]
          Length = 442

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKTAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 254 KLAHQYKVEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 313

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 314 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 374 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 431


>gi|225351180|ref|ZP_03742203.1| hypothetical protein BIFPSEUDO_02770 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158636|gb|EEG71878.1| hypothetical protein BIFPSEUDO_02770 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 549

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/323 (27%), Positives = 146/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P VI++ G+ G GKTT+ 
Sbjct: 62  LGTEVSQALNPAQQVVKIVNEELTAVLGAGVDRPLNF-AKNPPTVIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE--------------- 173
           GKL   + D+G   +L A D  R  A+ QL++  +R        E               
Sbjct: 121 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVASPG 180

Query: 174 -IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               D   +A +A   A+ K  D +IIDTAGRL  +  LM     +       D   P+ 
Sbjct: 181 LTTGDPVKVARDAVALAKQKLYDTVIIDTAGRLGVDEELMKQARDI------RDAVQPNE 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 235 ILFVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTG 294

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 295 EGLKDFEVFHPDRMASRILDMGD 317


>gi|58698555|ref|ZP_00373456.1| signal recognition particle-docking protein FtsY [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630589|ref|YP_002727380.1| signal recognition particle docking protein FtsY [Wolbachia sp.
           wRi]
 gi|58534937|gb|EAL59035.1| signal recognition particle-docking protein FtsY [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225592570|gb|ACN95589.1| signal recognition particle docking protein FtsY [Wolbachia sp.
           wRi]
          Length = 303

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 133/304 (43%), Positives = 191/304 (62%), Gaps = 3/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S    L KG   TS +  +G+  I S  ++LD  + +ELE+LLI  DIG   ++ I++ 
Sbjct: 1   MSLFGNLYKGLLKTSSRFSDGVKSIFSGKKKLDQSLLDELEELLISMDIGHKTSKLIIDR 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + ++ K+V    +   +   I  +L P+ +P   +   +PH+I+V GVNG GKTT IG
Sbjct: 61  LTSIKFDKEVEYNIITQQLVNEIEAILNPVVQPLILN--KKPHIIMVCGVNGNGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K  +    VML A DTFR+AA +QL IWA+R+    V  E GSD+A++AY A  QA
Sbjct: 119 KLAYKYKEMRKSVMLVACDTFRAAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
               VDV++IDTAGRL NN  LM  + K+ R +K+LD  APH V+ VLDATTGQNA  Q+
Sbjct: 179 IKDNVDVVLIDTAGRLQNNVNLMEELSKIYRTIKKLDGTAPHDVILVLDATTGQNAYSQL 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F  +   TGLI+TK+DGTA+GG +I +   +KI ++ +G+GE I DL  F +K+F+  
Sbjct: 239 EAFSKMVNVTGLIVTKLDGTAKGGVVIGLAEAYKIKLHAIGIGENIEDLREFTSKEFAEA 298

Query: 310 ITGC 313
           +  C
Sbjct: 299 LFNC 302


>gi|326204789|ref|ZP_08194643.1| signal recognition particle-docking protein FtsY [Clostridium
           papyrosolvens DSM 2782]
 gi|325985001|gb|EGD45843.1| signal recognition particle-docking protein FtsY [Clostridium
           papyrosolvens DSM 2782]
          Length = 302

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 187/303 (61%), Gaps = 4/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL +G   T   + E I  ++ S  ++D+ + +ELE++LI SDIG+    K++E+
Sbjct: 1   MGFFDKLKEGLQKTRKSITEKIDQVLVSFGKVDEELFDELEEILITSDIGIETTMKVIED 60

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   + +   + +   + E + ++L       N +   +P VI+V+GVNGVGKTT I
Sbjct: 61  LKEKVKDRKIIDPKDVKGLLKETLKEILEKGGNEMNLNT--KPSVIIVIGVNGVGKTTSI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++      G KV+LAAGDTFR+AAIDQL++WA R   + +  + GSD AA+ ++A + 
Sbjct: 119 GKIANLYKSQGKKVLLAAGDTFRAAAIDQLEVWAQRVGTEIIMQKEGSDPAAVIFDAVQA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+++  D+LI DTAGRLH    LM  + K+ RVL+R  P A    L VLDATTGQNA+ Q
Sbjct: 179 AKSRNADLLICDTAGRLHTKKNLMEELKKVSRVLERELPGADRETLLVLDATTGQNAIAQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F   +  TG+++TK+DGTA+GG ++ I     IPV  +GVGE ++DL+ F A +F  
Sbjct: 239 AKTFSETSDITGIVLTKLDGTAKGGIVVAIKSELDIPVKLIGVGEQLDDLQKFDAGEFIE 298

Query: 309 VIT 311
            + 
Sbjct: 299 ALF 301


>gi|315154687|gb|EFT98703.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0043]
          Length = 442

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 254 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 313

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 314 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMMQA 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 374 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 431


>gi|255970710|ref|ZP_05421296.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T1]
 gi|255961728|gb|EET94204.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis T1]
          Length = 371

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 126/298 (42%), Positives = 182/298 (61%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 63  EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 122

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 123 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 182

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R S + V    G D AA+ ++A ++A
Sbjct: 183 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERASVEVVRGNAGGDPAAVVFDAVERA 242

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 243 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 302

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 303 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 360


>gi|78183595|ref|YP_376029.1| cell division transporter substrate-binding protein FtsY
           [Synechococcus sp. CC9902]
 gi|78167889|gb|ABB24986.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           CC9902]
          Length = 522

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 176/312 (56%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ E + W+ +L +G   T      G+ + +    L   V +ELE LL+R+D GV    
Sbjct: 208 QMSLEEIDWLGRLRRGLEKTRQGFVTGLLENLGDDPLTPEVLDELETLLLRADAGVQATD 267

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVN 120
           +++E L  +   + V     +  + + +  +L    K    P       R ++ L+VGVN
Sbjct: 268 QVLEALRQRMNEEVVDPVEGIRFLKDQLRGLLDAPIKASGVPLLAPERGRLNIWLMVGVN 327

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W +R+    + +   + D A
Sbjct: 328 GVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVEVWGERSDVPVISNPSSNADPA 387

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A++++ D+L++DTAGRL     LM  + K+ +++ RL P A    L VLDA
Sbjct: 388 AVVFDAIGAARSRETDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEANVESLLVLDA 447

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN LRQ   F   AG TG+++TK+DGTARGG  + +     +P+ F+G GEGI DL 
Sbjct: 448 SQGQNGLRQAMAFAKAAGLTGVVVTKLDGTARGGVALAVSSEAGLPIRFIGAGEGIRDLR 507

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 508 PFNSFEFVEALL 519


>gi|315655725|ref|ZP_07908623.1| signal recognition particle protein [Mobiluncus curtisii ATCC
           51333]
 gi|315489789|gb|EFU79416.1| signal recognition particle protein [Mobiluncus curtisii ATCC
           51333]
          Length = 557

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 145/309 (46%), Gaps = 19/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L E   ++    +L D   +    ++   LI +D+ + V +     +  K Y 
Sbjct: 2   FTNLQDRLTESFKNLRKKGKLKDSDVDATVSDIRRALIEADVALEVVKDFTATVKEKAYG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGK 130
              S      Q+++  V++ +  +L    +  ++    + P V ++ G+ G GKTT+ GK
Sbjct: 62  AARSEALNPAQQIVKIVNDELINILGGEDRELHFSKPGKGPTVFMLAGLQGAGKTTLAGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L K ++    KV+L A D  R  A++QL+I  ++        E G+   D   +A  A  
Sbjct: 122 LGKWLAKENRKVLLVAADLQRPNAVNQLQIVGEQAGVTVFAPEPGNGVGDPVDVARRALA 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A     DV+I+DTAGRL  +  LMA    +       D   P  VL VLDA  GQ+A+R
Sbjct: 182 LASGSGYDVMIVDTAGRLGVDEELMAQARSI------RDEVQPDEVLFVLDAMIGQDAVR 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F      TG+++TK+DG ARGG  + +     +PV F   GEG++D E F A   +
Sbjct: 236 TARAFQEGVDFTGVVLTKLDGDARGGAALSVRGVTGVPVLFASTGEGLDDFERFHADRMA 295

Query: 308 AVITGCLDY 316
           + I    D 
Sbjct: 296 SRILDMGDL 304


>gi|194364928|ref|YP_002027538.1| signal recognition particle protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194347732|gb|ACF50855.1| signal recognition particle protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 458

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   I  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELTAVMGAEASDLNLNVPA-PAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QLK  A++    F  S       A+   A   A+
Sbjct: 121 AKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  +  +MA I  +   +           L V+DA TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+GV E    L+ F     ++ I
Sbjct: 235 AFGDALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|304392576|ref|ZP_07374516.1| signal recognition particle protein [Ahrensia sp. R2A130]
 gi|303295206|gb|EFL89566.1| signal recognition particle protein [Ahrensia sp. R2A130]
          Length = 511

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L      +     L +        E+   LI +D+ + V ++  E++  K   
Sbjct: 2   FDSLQTRLSGIFDGLTRRGALSEKDVASALREIRRALIEADVALEVVREFTEKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + +  ML    +  + + +  P  I++VG+ G GKTT  GK+
Sbjct: 62  ASVVKSVTPGQMVVKIVHDELVAMLGTEDERIDLN-APSPVGIMMVGLQGSGKTTTSGKI 120

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + ++      KV++A+ DT R AA +QL+    +T  D +    G +  A+A  A +  +
Sbjct: 121 ALRLKTRDRKKVLMASLDTRRPAAQEQLRQLGVQTEVDTLPIVEGQEPVAIANRAMQAGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR   +  LMA +  +           PH +L V D+ TGQ+A+   +
Sbjct: 181 LGGYDVVILDTAGRTSIDEPLMAEMADIRSAAN------PHEILLVADSLTGQDAVNLAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TGL++T++DG  RGG  + +      P+  LG GE ++ LE F  K  +  I
Sbjct: 235 NFDTRVGITGLVLTRIDGDGRGGAALSMRAVTGKPIKLLGTGEKMDALEDFYPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|306823684|ref|ZP_07457059.1| signal recognition particle protein [Bifidobacterium dentium ATCC
           27679]
 gi|309803035|ref|ZP_07697136.1| signal recognition particle protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553391|gb|EFM41303.1| signal recognition particle protein [Bifidobacterium dentium ATCC
           27679]
 gi|308220502|gb|EFO76813.1| signal recognition particle protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 547

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 146/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 62  LGTEVSQALNPAQQVVKIVNEELTDVLGAGMDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE--------------- 173
           GKL   + D+G   +L A D  R  A+ QL++  +R        E               
Sbjct: 121 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSAGGEAVASPG 180

Query: 174 -IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               D   +A ++   A+ K  D +IIDTAGRL  +  LM     +       D   P+ 
Sbjct: 181 LTTGDPVKVARDSVAFARQKLYDTVIIDTAGRLGVDEELMRQARDI------RDAVQPNE 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 235 ILFVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTG 294

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 295 EGLKDFEVFHPDRMASRILDMGD 317


>gi|23464904|ref|NP_695507.1| signal recognition particle protein [Bifidobacterium longum
           NCC2705]
 gi|23325496|gb|AAN24143.1| signal recognition particle protein [Bifidobacterium longum
           NCC2705]
          Length = 582

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 148/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +    ++  + 
Sbjct: 34  AAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERA 93

Query: 75  YAKDVSV-----QRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 94  LGTEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 152

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CS 172
           GKL   + D+G   +L A D  R  A+ QL++  +R                        
Sbjct: 153 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPG 212

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +   D   +A ++ + A+ K  D +IIDTAGRL  +  LM     +       D   P+ 
Sbjct: 213 QTSGDPVKVARDSIELAKQKLYDTVIIDTAGRLGVDEELMKQARDI------RDAVRPNE 266

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 267 ILFVIDAMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNG 326

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 327 EGLKDFEVFHPDRMASRILDMGD 349


>gi|281420783|ref|ZP_06251782.1| signal recognition particle protein [Prevotella copri DSM 18205]
 gi|281405075|gb|EFB35755.1| signal recognition particle protein [Prevotella copri DSM 18205]
          Length = 450

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 142/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA++   ++  K   
Sbjct: 2   FENLSDRLERSFKILKGEGKITEINVAETMKDVRRALLDADVNYKVAKEFTNKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++     P   +    P VIL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMIKLVHDELEELMGGEEAPLKLE--SHPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +    G K +L A D +R AAI QL +  ++            D  ++A  A +QA+
Sbjct: 120 ANMLKTKKGKKPLLVACDVYRPAAIQQLHVVGEQVGVPVYSEPENKDVLSIADHAIQQAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRL  +  +M  I  +   L       P   L V+D+ TGQ+A+   +
Sbjct: 180 TNGNDVVIVDTAGRLAIDEQMMNEISNLKNHL------RPDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNDRLDFNGVVLTKLDGDTRGGAALSIRTVVTKPIKFIGTGEKMDAIDVFHPARMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|315172941|gb|EFU16958.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX1346]
          Length = 442

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 254 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 313

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 314 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 374 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 431


>gi|91787012|ref|YP_547964.1| signal recognition particle subunit FFH/SRP54 (srp54) [Polaromonas
           sp. JS666]
 gi|91696237|gb|ABE43066.1| signal recognition particle subunit FFH/SRP54 (srp54) [Polaromonas
           sp. JS666]
          Length = 452

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 142/304 (46%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ + KL   + ++    R+ +     +  E+   L+ +D+ + V +  +  +  K   +
Sbjct: 3   SALTDKLSRLVKEMRGQARITESNVQDMLREVRMALLEADVALPVVRDFIARVKDKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q ++  V+  +   +       N   +  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVMGSLSPGQALVGIVNRELAATMGEGVSDINL-AAQPPAVILMAGLQGAGKTTTTAKLA 121

Query: 133 KKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +    KV+  +GD +R AAI+QLK    +  A++  S        +A  A   A+ 
Sbjct: 122 KHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAGAEWFPSTPDQKPVDIAKAAIDYARR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  +  LM  I ++   L       P   L V+DA  GQ+A+   + 
Sbjct: 182 HFFDVLLVDTAGRLAIDEALMKEIRELHAALN------PVETLFVVDAMQGQDAVNTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK DG +RGG  + +      P+ F G  E I+ LE F A+  +  I 
Sbjct: 236 FKEALPLTGIILTKTDGDSRGGAALSVRQITGAPIKFSGTSEKIDGLEVFDAERHAGRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|227497506|ref|ZP_03927735.1| signal recognition particle [Actinomyces urogenitalis DSM 15434]
 gi|226833034|gb|EEH65417.1| signal recognition particle [Actinomyces urogenitalis DSM 15434]
          Length = 498

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    RL D   +    E+   L+ +D+ + V +     +  K   
Sbjct: 2   FGNLSDRLTASFKGLRGKGRLTDADIDTTVSEIRRALLEADVALPVVRSFTSAVREKAKE 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              S      Q+V+  V++ + ++L   ++  NW     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AARSQALNPAQQVIKIVNDELIEVLGGATRELNW-ADRGPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              +   G +V+L A D  R  A+ QL + A+R   D    E G+   D  A+A    +Q
Sbjct: 121 GHWLRGEGKRVLLVASDLQRPNAVTQLSVVAERAGVDVWAPEPGNGVGDPVAVAASGVEQ 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGRL  ++ +M         ++  D   PH +L VLDA  GQ+A+  
Sbjct: 181 ARTHGYDVVVVDTAGRLGVDAEMMDQ------AIRIRDAVHPHEILFVLDAMVGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G TG++++K+DG ARGG  + +      PV F   GEG+ D E F A   ++
Sbjct: 235 SVAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGAPVLFSSTGEGLEDFERFHADRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|123966680|ref|YP_001011761.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9515]
 gi|123201046|gb|ABM72654.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9515]
          Length = 492

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++     D   ++++  L+ +D+ ++V ++ V ++  K   
Sbjct: 2   FDELSSRFEDAVKGLRGEAKISENNIDDALKQVKKALLDADVSLSVVKEFVSDVKDKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+ +  V++ +  ++   + P  ++    P VIL+ G+ G GKTT  GKL
Sbjct: 62  EDVVRGVNPGQKFIEVVNKELINVMGNENSPL-FEKETPPTVILMAGLQGAGKTTATGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQ 190
              + +   KV+L A D +R AA++QLK   ++   +     E  S    +A +A   A 
Sbjct: 121 GLYLKEKEKKVLLVAADIYRPAAVEQLKTIGNQYDLEVFSAKEKDSKPEEIAKDALIYAN 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VD LI+DTAGRL  + ++M+ + ++  V        P  VL V+D+  GQ A    +
Sbjct: 181 ENNVDTLIVDTAGRLQIDELMMSEMVRIKEVTN------PDEVLLVVDSMIGQEAADLTK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G +G I+TK+DG +RGG  + I      P+ F+G GE I  L+PF  +  ++ I
Sbjct: 235 SFHEKVGISGAILTKLDGDSRGGAALSIRKISGKPIKFIGTGEKIEALQPFHPERMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|291550079|emb|CBL26341.1| signal recognition particle-docking protein FtsY [Ruminococcus
           torques L2-14]
          Length = 313

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 180/308 (58%), Gaps = 4/308 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  E   + ++L  G   T   +  G+  I     ++DD   EELE+ LI  D+GV    
Sbjct: 1   MGEEKKGFFKRLVSGLTKTRDNIVSGMDSIFHGFSKIDDDFYEELEETLIMGDLGVRATM 60

Query: 65  KIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            I+E+L  K   + +         V + I + +        ++F +R  V+ V+GVNGVG
Sbjct: 61  DIIEDLKVKVKEQHIKEPIECRQLVIDSIREQMD--VGETAYEFENRQSVVFVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K+     KV+LAA DTFR+AA +QLK W++R   + +  + G+D A++ Y
Sbjct: 119 KTTTIGKLAGKLKAQNKKVILAAADTFRAAAGEQLKEWSNRAGVEMIGGQEGADPASVVY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A++ DVL+ DTAGRLHN   LM  + K+ RV+ R  P A    L VLDATTGQ
Sbjct: 179 DAVAAAKARRADVLLCDTAGRLHNKKNLMEELKKINRVIDREYPDAFRETLVVLDATTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F+ V   TG+++TKMDGTA+GG  + I     IPV ++GVGE I+DL+ F +
Sbjct: 239 NALAQAKEFNEVTDITGIVLTKMDGTAKGGIAVAIQSELGIPVKYIGVGETIDDLQKFDS 298

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 299 EEFVNALF 306


>gi|254500337|ref|ZP_05112488.1| signal recognition particle protein [Labrenzia alexandrii DFL-11]
 gi|222436408|gb|EEE43087.1| signal recognition particle protein [Labrenzia alexandrii DFL-11]
          Length = 511

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   LI +D+ + + +   +++  +   
Sbjct: 2   FESLSDRLSGVFDKLTGRGALSENDVNEAMREIRRALIEADVALPIVRSFTDKVRHRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + + +ML   ++P + + +  P  I++VG+ G GKTT   K+
Sbjct: 62  AEVVKSVTPGQMVVKIVHDQLIEMLGEDAQPIDLN-APAPVAIMMVGLQGSGKTTTTAKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++       KV++A+ DT R AA +QLKI  ++   D +    G     +A  A   A+
Sbjct: 121 ARRFTQRDKRKVLMASLDTRRPAAQEQLKILGEQNDVDTLPIIEGQGPVEIASRAMSAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR+H +  LM  + ++           PH ++ V D+ TGQ+A+   +
Sbjct: 181 LGGYDVVLLDTAGRIHIDEPLMVEMAEVKAAAN------PHEIILVADSLTGQDAVNLAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+ +T+MDG  RGG  + +      PV  +G GE  + LE F  K  +  I
Sbjct: 235 SFDERVGITGIALTRMDGDGRGGAALSMQAVTGKPVKLIGTGEKSDALEDFHPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|257420452|ref|ZP_05597442.1| signal recognition particle-docking protein ftsY [Enterococcus
           faecalis X98]
 gi|257162276|gb|EEU92236.1| signal recognition particle-docking protein ftsY [Enterococcus
           faecalis X98]
          Length = 331

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 23  EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 82

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 83  VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 142

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 143 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 202

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 203 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMMQA 262

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 263 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 320


>gi|12230630|sp|O59307|SRP54_PYRHO RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
          Length = 443

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S    L   +  I  +  +D+ + +E    ++  L+++D+ V +  K+ +E+  +   
Sbjct: 3   LDSLGRALSNALKKIARAGSVDEALVKEVVRDIQRALLQADVNVRLVLKLTKEIQRRALE 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +         + ++  V E + K L   +KP   +   +P V+L VGV G GKTT + KL
Sbjct: 63  EKPPAGISKKEHIIKIVYEELTKFLGTEAKPI--EIKEKPTVLLTVGVQGSGKTTTVAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G KV +   DT+R  A  QLK   D    +        DA  LA E  +  + 
Sbjct: 121 ARYFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAVKLAKEGVEYFKT 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VD++I+DTAGR      L+  +  +   +       PH V+ V+D T GQ A  Q   
Sbjct: 181 RDVDLIIVDTAGRHKEEKDLIEEMRMISEEI------RPHEVILVIDGTIGQQAYNQALA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+D +A+GGG +  V     P+ F+GVGE I+DLEPF    F + + 
Sbjct: 235 FKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPARFVSRLL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GLGD 298


>gi|86141178|ref|ZP_01059724.1| signal recognition particle protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85831737|gb|EAQ50192.1| signal recognition particle protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 442

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL + +  +    ++ +       +E+   L+ +D+   +A+     +  K   
Sbjct: 2   FDNLSDKLDKAMHVLKGHGQITEVNVAETLKEIRRALVDADVNYKIAKDFTNTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q +   V + + +++   ++  N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QDVLTALKPGQLMTKLVKDELTELMGGEAEGINL--SGNPSVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +    K +L A D +R AAIDQL +  D+   +   ++   D   ++  A   A+
Sbjct: 120 ANFLKNKKTKKPLLVACDVYRPAAIDQLHVVGDQIGVEVFSNKEEKDPVKISEAAIAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   + +IIDTAGRL  +  +M  I  +   +K      P   L V+D+ TGQ+A+   +
Sbjct: 180 ANGFNAVIIDTAGRLAVDQAMMNEIAAIHEAIK------PQETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V    G+I+TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 AFNDVLNFDGVILTKLDGDTRGGAALSIKTVVDKPIKFIGTGEKMEAIDVFYPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|307288867|ref|ZP_07568840.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0109]
 gi|306500139|gb|EFM69483.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0109]
 gi|315164394|gb|EFU08411.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX1302]
          Length = 442

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 126/298 (42%), Positives = 182/298 (61%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R S + V    G D AA+ ++A ++A
Sbjct: 254 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERASVEVVRGNAGGDPAAVVFDAVERA 313

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 314 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 374 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 431


>gi|294780222|ref|ZP_06745594.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis PC1.1]
 gi|307270587|ref|ZP_07551885.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX4248]
 gi|307276682|ref|ZP_07557800.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX2134]
 gi|312953193|ref|ZP_07772039.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0102]
 gi|294452765|gb|EFG21195.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis PC1.1]
 gi|306506792|gb|EFM75944.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX2134]
 gi|306513168|gb|EFM81802.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX4248]
 gi|310628810|gb|EFQ12093.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0102]
 gi|315034799|gb|EFT46731.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0027]
 gi|315152761|gb|EFT96777.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0031]
 gi|315159403|gb|EFU03420.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0312]
 gi|323479025|gb|ADX78464.1| signal recognition particle-docking protein FtsY-like protein
           [Enterococcus faecalis 62]
 gi|327536215|gb|AEA95049.1| cell division protein FtsY [Enterococcus faecalis OG1RF]
          Length = 442

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 126/298 (42%), Positives = 182/298 (61%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R S + V    G D AA+ ++A ++A
Sbjct: 254 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERASVEVVRGNAGGDPAAVVFDAVERA 313

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 314 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 374 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 431


>gi|171741396|ref|ZP_02917203.1| hypothetical protein BIFDEN_00479 [Bifidobacterium dentium ATCC
           27678]
 gi|171277010|gb|EDT44671.1| hypothetical protein BIFDEN_00479 [Bifidobacterium dentium ATCC
           27678]
          Length = 547

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 146/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 62  LGTEVSQALNPAQQVVKIVNEELTDVLGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE--------------- 173
           GKL   + D+G   +L A D  R  A+ QL++  +R        E               
Sbjct: 121 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSAGGEAVASPG 180

Query: 174 -IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               D   +A ++   A+ K  D +IIDTAGRL  +  LM     +       D   P+ 
Sbjct: 181 LTTGDPVKVARDSVAFARQKLYDTVIIDTAGRLGVDEELMRQARDI------RDAVQPNE 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 235 ILFVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTG 294

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 295 EGLKDFEVFHPDRMASRILDMGD 317


>gi|71066262|ref|YP_264989.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Psychrobacter arcticus 273-4]
 gi|71039247|gb|AAZ19555.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Psychrobacter arcticus 273-4]
          Length = 511

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I  + +L +        E+   L+ +D+ + V +  V+ +  +   
Sbjct: 2   FDTLTERLSSSLRNIAGTGQLTEDNIKDTLREVRMALLEADVALPVTRDFVKRVKEQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q  +  V + + +M+   ++         P V L+ G+ G GKTT  GKL
Sbjct: 62  AEVLKELAPGQAFVKIVHDELTEMMGSANQQLEM-TGKPPVVYLLAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVML + D +R AAI QL+  A + +A FV S    +   +A  A ++A+
Sbjct: 121 AKFLQERHKKKVMLVSADVYRPAAIAQLEQVAGQVNAKFVNSSSDENPIDIALRAIEEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D+LIIDTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 IQYQDILIIDTAGRLAIDETMMDEIKALTAAVN------PSETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG GE ++ LE F  +  +  I
Sbjct: 235 AFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLDALELFHPERIAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|163814046|ref|ZP_02205438.1| hypothetical protein COPEUT_00199 [Coprococcus eutactus ATCC 27759]
 gi|158450495|gb|EDP27490.1| hypothetical protein COPEUT_00199 [Coprococcus eutactus ATCC 27759]
          Length = 335

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 121/311 (38%), Positives = 174/311 (55%), Gaps = 3/311 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L +G A T   + E   D+  +  +DD   E LE+  I +D+G    +K++E+L 
Sbjct: 19  GFFARLKEGLAKTRNNIVESFADVFGASHIDDDFYENLEETFIMADMGYETTEKVIEDLK 78

Query: 72  TKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +     +         V  +I   +        +DF ++  V+LV+GVNGVGKTT IGK
Sbjct: 79  QRVEDSHIKEPAACKELVINIIRDQMS--VDESAYDFENKKTVVLVIGVNGVGKTTTIGK 136

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    G +V++AA DTFR+AAIDQLK WADR   D +    G+D AA+ Y+A   A+
Sbjct: 137 LAAQYRQRGKRVLMAAADTFRAAAIDQLKTWADRAQVDIISHNEGADPAAVVYDAVAAAK 196

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  D+L++DTAGRLHN   LM  + KM R++ R  P A    L VLD TTGQNAL Q  
Sbjct: 197 ARNTDILLVDTAGRLHNKKNLMDELAKMRRIITRDYPEANVEALIVLDGTTGQNALEQAR 256

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F  V    G+++TK+DGTA+GG  I I     +PV F+GVGE I DL+ F  + +   +
Sbjct: 257 QFSNVTELDGIVITKLDGTAKGGIAIAIQSELDVPVKFIGVGEKIGDLQRFDPQAYVNAL 316

Query: 311 TGCLDYGEEKI 321
               D    +I
Sbjct: 317 FADFDEDRSEI 327


>gi|58585012|ref|YP_198585.1| Signal recognition particle GTPase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58419328|gb|AAW71343.1| Signal recognition particle GTPase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 301

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 132/302 (43%), Positives = 191/302 (63%), Gaps = 3/302 (0%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
               L +G   TS +  +G+  I S  ++LD  + +ELE+LLI  DIG   ++ I++ L 
Sbjct: 1   MFSNLYRGLLKTSSRFSDGVKSIFSAKKKLDQSLLDELEELLISMDIGHKTSKLIIDRLA 60

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++ K+V    +   +   I  +L P+ +P   D    PH+I+V GVNG GKTT IGKL
Sbjct: 61  SIKFDKEVEHNIITQQLMSEIEAILNPVVQPLILD--KNPHIIMVCGVNGNGKTTTIGKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K  + G  VML A DTFR+AA +QL IWA+R+    V  E G+D+A++AY A  QA  
Sbjct: 119 AYKYKNMGKSVMLVACDTFRAAASEQLNIWAERSDCFIVTGEYGNDSASVAYRAVSQAIK 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VDV++IDTAGRL NN  LM  + K+ R +K+LD  APH V+ VLDATTGQNA  Q+E 
Sbjct: 179 GSVDVVLIDTAGRLQNNVNLMEELSKIYRTIKKLDGTAPHDVILVLDATTGQNAYSQLEA 238

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG +I +  T+++ ++ +G+GE I DL  F +K+F+  + 
Sbjct: 239 FSKMVSVTGLIITKLDGTAKGGVVIGLAETYRVKLHAIGIGESIEDLREFTSKEFAKALF 298

Query: 312 GC 313
           GC
Sbjct: 299 GC 300


>gi|20807911|ref|NP_623082.1| Signal recognition particle GTPase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516478|gb|AAM24686.1| Signal recognition particle GTPase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 295

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 118/293 (40%), Positives = 181/293 (61%), Gaps = 5/293 (1%)

Query: 21  FASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
                  L   + +++S  +++D+ + EELE+ LI +D+GV    KI++ L  K   + +
Sbjct: 5   LQKFKENLTAKLNEVLSFGKKVDEELFEELEEALILADVGVDTTYKIIQSLKQKTKEEKI 64

Query: 80  SVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
                + ++ ++ I+++L    +PF       P VIL+VGVNGVGKTT IGKL+      
Sbjct: 65  FEASKVRELLAQEIYEILQKDVEPFVL---TSPMVILIVGVNGVGKTTTIGKLAHLYKKQ 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G  VM+ A DTFR+AAIDQL++WA R +   +  + GSD A++ ++  + A+A+ +DV+I
Sbjct: 122 GKSVMMVAADTFRAAAIDQLEVWAKRVNCPIIKHQEGSDPASVVFDGLQSAKARGIDVVI 181

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
            DTAGRLHN   LM  + K+ +V+ R    A      VLDATTGQNAL+Q ++F  VA  
Sbjct: 182 CDTAGRLHNKKNLMEELRKIRKVIDREYSEARVETFLVLDATTGQNALQQAKIFKEVADI 241

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           TG+I+TK+DGTA+GG +I I     +P+ ++G+GEG+ DL+ F AK F + I 
Sbjct: 242 TGIILTKLDGTAKGGIVIAIKEELNLPIRYIGIGEGMEDLQAFDAKSFVSAIF 294


>gi|157829036|ref|YP_001495278.1| cell division protein ftsY [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933760|ref|YP_001650549.1| signal recognition particle-docking protein FtsY [Rickettsia
           rickettsii str. Iowa]
 gi|157801517|gb|ABV76770.1| cell division protein ftsY [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908847|gb|ABY73143.1| cell division protein [Rickettsia rickettsii str. Iowa]
          Length = 303

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 128/303 (42%), Positives = 187/303 (61%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD    E LE+LLI SD+ V V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDAETLEALEELLISSDMSVLVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   +++LI + L     PF     ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAKLIEQQLSKSEIPFTLS-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AA++QL  WADR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSTWADRANALLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+DA TGQN   QVE
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVIDAITGQNTYNQVE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  I
Sbjct: 241 HFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIEDLKIFNQHDFARNI 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|255262300|ref|ZP_05341642.1| signal recognition particle protein [Thalassiobium sp. R2A62]
 gi|255104635|gb|EET47309.1| signal recognition particle protein [Thalassiobium sp. R2A62]
          Length = 499

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   L+ +D+ + VA+  V+ +  K   
Sbjct: 2   FGSLSDRLSGVFDKLTKQGALSEDDVKTALREVRVALLEADVSLPVARDFVKAVQDKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L  +  P        P  IL+VG+ G GKTT   KL
Sbjct: 62  QAVTKSVTPGQQVVKIVHDELIHVLTGVGDPSALKIDSPPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++    G +V++A+ D  R AA++QL+I   +   D +    G D  A+A  A  QA 
Sbjct: 122 AKRLKDREGKRVLMASLDVNRPAAMEQLQILGAQIGVDTLPIVKGEDPVAIAKRAKTQAS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH +  L+A    +       D   P   L V+D  TGQ+A+   E
Sbjct: 182 LGGYDVYMLDTAGRLHIDQELIAQASAV------RDVANPRETLLVVDGLTGQDAVNVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F  +  +  I
Sbjct: 236 EFDNNIGVSGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGLGEKMDAIEEFHPERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|298292734|ref|YP_003694673.1| signal recognition particle protein [Starkeya novella DSM 506]
 gi|296929245|gb|ADH90054.1| signal recognition particle protein [Starkeya novella DSM 506]
          Length = 517

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   +  +     L +        E+   LI +D+ + V +   + + T+   
Sbjct: 2   FDSLTDRLGGILDRLKKRGALSEADVGEAMREVRRALIEADVALDVVRSFTDRVRTRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V++ +  ML   +KP + D +    V L+VG+ G GKTT   K+
Sbjct: 62  AEVIKSVTPGQMVVKIVNDELVAMLGSDAKPIDLDAAPPVPV-LMVGLQGSGKTTSTAKI 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+++D    KV++A+ DT R AA++QL     +   + +    G  A  +A  A + A+
Sbjct: 121 AKRLTDRSNRKVLMASLDTRRPAAMEQLATLGSQVGVETLPIVAGQSAVQIARRAMEAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR+  +  LMA + ++           PH VL V D+ TGQ+A+   +
Sbjct: 181 LGGYDVVMLDTAGRVTLDEALMAEVAEVKAA------TRPHEVLLVADSLTGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+ DG  RGG  + +      P+  LG GE ++ LE F  +  +  I
Sbjct: 235 AFDERVGLTGIVLTRADGDGRGGAALSMRAVTGKPIKLLGTGEKMDALEDFDPRRVAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|14591457|ref|NP_143537.1| signal recognition particle protein Srp54 [Pyrococcus horikoshii
           OT3]
 gi|3258124|dbj|BAA30807.1| 445aa long hypothetical signal recognition particle protein
           [Pyrococcus horikoshii OT3]
          Length = 445

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S    L   +  I  +  +D+ + +E    ++  L+++D+ V +  K+ +E+  +   
Sbjct: 5   LDSLGRALSNALKKIARAGSVDEALVKEVVRDIQRALLQADVNVRLVLKLTKEIQRRALE 64

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +         + ++  V E + K L   +KP   +   +P V+L VGV G GKTT + KL
Sbjct: 65  EKPPAGISKKEHIIKIVYEELTKFLGTEAKPI--EIKEKPTVLLTVGVQGSGKTTTVAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G KV +   DT+R  A  QLK   D    +        DA  LA E  +  + 
Sbjct: 123 ARYFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAVKLAKEGVEYFKT 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VD++I+DTAGR      L+  +  +   +       PH V+ V+D T GQ A  Q   
Sbjct: 183 RDVDLIIVDTAGRHKEEKDLIEEMRMISEEI------RPHEVILVIDGTIGQQAYNQALA 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+D +A+GGG +  V     P+ F+GVGE I+DLEPF    F + + 
Sbjct: 237 FKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPARFVSRLL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GLGD 300


>gi|183601839|ref|ZP_02963208.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|241190330|ref|YP_002967724.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241195736|ref|YP_002969291.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218724|gb|EDT89366.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|240248722|gb|ACS45662.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240250290|gb|ACS47229.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|295793317|gb|ADG32852.1| signal recognition particle protein [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 547

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 148/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L D   +    E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLSNAFKHLKSKGKLSDADIDGTIREIRRALLDADVSLDVVRSFTARVRDRA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            + +VS      Q+V+  V++ +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 62  LSTEVSEALNPAQQVVRIVNDELTDILGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CS 172
           GKL   + D+G   +L A D  R  A+ QL++  +R                        
Sbjct: 121 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLEVVGERAGVPVYAPEKGVQSAGGDAVSAPG 180

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E   D   +A ++ + A+ K  D +IIDTAGRL  +  LM     +       D   P+ 
Sbjct: 181 ETTGDPVKVARDSIEYARQKMYDTVIIDTAGRLGVDETLMQQARDI------RDAVQPNE 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL V+DA TGQ+A+R  + F      TG++++K+DG  RGG  + +      P+ F   G
Sbjct: 235 VLFVIDAMTGQDAVRTAQAFDEGVNFTGVVLSKLDGDTRGGAALSVASVTGKPILFASNG 294

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 295 EGLKDFEVFHPDRMASRILDMGD 317


>gi|296241780|ref|YP_003649267.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermosphaera aggregans DSM 11486]
 gi|296094364|gb|ADG90315.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Thermosphaera aggregans DSM 11486]
          Length = 448

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/298 (31%), Positives = 146/298 (48%), Gaps = 15/298 (5%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV- 81
             LKE I     S + ++ V E ++DL   L++SD+ + +A +I +++  +   ++  V 
Sbjct: 6   ENLKESIAKFFRSEKYEEAVNEFIKDLQKELVKSDVNLNLAFEITKKIKERALTQEPPVG 65

Query: 82  ----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
               +  L  V E + K+L   SKP +   + +P +I++VG+ G GKTT   KL+     
Sbjct: 66  VSRKEWFLSIVYEELVKLLGGDSKP-SIKPARKPWIIMLVGLQGSGKTTTAAKLAYFYKL 124

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            G KV L A DTFR AA DQL+   ++            DA  +A    K    K  +V+
Sbjct: 125 EGYKVGLVAADTFRPAAYDQLRQLGEQIGVPVYGDPSIEDAVEIASRGVKYFVEKGFEVV 184

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           IIDTAGR H    L+  +  +   +K      P  ++ V+D + GQ A    + FH    
Sbjct: 185 IIDTAGRHHKEEDLLEEMRLISSSVK------PDEIILVIDGSIGQQAYNIAKKFHETTP 238

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              +I+TK+DGTA+GGG +  V     P+ F+G+GE + D E F        + G  D
Sbjct: 239 IGSIIVTKLDGTAKGGGALSAVAATGAPIKFVGLGEKVEDFEVFKPSKLVGRVLGYGD 296


>gi|313886512|ref|ZP_07820228.1| signal recognition particle-docking protein FtsY [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332300308|ref|YP_004442229.1| signal recognition particle-docking protein FtsY [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312924058|gb|EFR34851.1| signal recognition particle-docking protein FtsY [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332177371|gb|AEE13061.1| signal recognition particle-docking protein FtsY [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 319

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 118/302 (39%), Positives = 183/302 (60%), Gaps = 6/302 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L  G   +   + + +T  ++ + ++DD + ++LED+L+ SD+GV    KI++ +  +  
Sbjct: 15  LDTGLEKSKTSMVDKLTRAVAGKSKVDDEILDDLEDILVTSDVGVDTTLKIIKRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K V    +   + + +  +L        + F    +  P+VI+VVGVNGVGKTT IGK
Sbjct: 75  RDKYVGTSELKSILRDEVAALLAENGTTDGESFTLPANAHPYVIMVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    G +++L A DTFR+AAI+QL+IW +R     V  ++GSD A++A++  + A 
Sbjct: 135 LAYQFKQQGKRIVLGAADTFRAAAIEQLEIWGERVGVPVVKQQMGSDPASVAFDTLQSAV 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DV+IIDTAGRLHN   LM  + K+ RV+ ++ P APH VL VLD +TGQNA  Q +
Sbjct: 195 AQDADVVIIDTAGRLHNQVSLMNELSKIKRVMAKVVPDAPHEVLLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A    + L +TK+DGTA+GG +I I    K+PV ++G+GE I DL+ F  ++F   I
Sbjct: 255 QFTAATDVSALAITKLDGTAKGGVVIGISDQFKVPVKYIGLGEKIEDLQVFRKREFVDSI 314

Query: 311 TG 312
            G
Sbjct: 315 FG 316


>gi|257066451|ref|YP_003152707.1| signal recognition particle-docking protein FtsY [Anaerococcus
           prevotii DSM 20548]
 gi|256798331|gb|ACV28986.1| signal recognition particle-docking protein FtsY [Anaerococcus
           prevotii DSM 20548]
          Length = 400

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 130/308 (42%), Positives = 193/308 (62%), Gaps = 3/308 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           A E + +  K+ KG + T  +  +G+T++ +   ++DD + EELE++LI +DIG+    +
Sbjct: 93  ADEGIGFFAKIKKGLSKTRDQFSQGLTNLFTRNVKIDDDLYEELEEILISADIGMKSTLE 152

Query: 66  IVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVG 123
           IV+EL  +   + +     +Y V  E++ K L   +   N + + +   VILV+GVNGVG
Sbjct: 153 IVDELRDEIKKRSIKEADQIYPVLQEIMIKKLDEKNLDNNLNIADKNLSVILVIGVNGVG 212

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+  +   G  VMLAA DTFR+AAI+QL  WA+++  + +  + GSD +A+ +
Sbjct: 213 KTTTIGKLANNLKKEGKNVMLAAADTFRAAAIEQLGEWAEKSDIEMISHKEGSDPSAVIF 272

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A K A+AK  DVLI DTAGRLHN   LM  + K+ + +      A    L VLDATTGQ
Sbjct: 273 DAIKSAKAKNSDVLICDTAGRLHNKKNLMKELEKINKTIDTHAKGASRDNLLVLDATTGQ 332

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q+  F  V   +GLI+TK+DGTA+GG + P+ V  ++PV ++GVGEGINDLE F +
Sbjct: 333 NAVSQLREFKNVTDISGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGINDLEKFDS 392

Query: 304 KDFSAVIT 311
           K F   + 
Sbjct: 393 KTFVEAMF 400


>gi|307103932|gb|EFN52189.1| hypothetical protein CHLNCDRAFT_139411 [Chlorella variabilis]
          Length = 355

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 119/304 (39%), Positives = 170/304 (55%), Gaps = 7/304 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIGVAVAQKIVEELL 71
           + ++ KG + T  KL   I ++ +   LDD     EELED LI SD G   A KIV+ + 
Sbjct: 37  LGRIVKGTSKTREKLG-VIEELFTYWNLDDADETLEELEDALIMSDFGPRTAFKIVDGIR 95

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIG 129
            K  A  +     +  ++ + I  +L              +P V+L+VGVNG GKTT IG
Sbjct: 96  DKVLAGQLKTGDQIRAELKQSIAALLAERGGSAELALPDSKPAVLLIVGVNGGGKTTTIG 155

Query: 130 KLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAFK 187
           KL+ +  ++ G KV+L AGDTFR+AA +QL+ WA R  AD V ++   +    + Y+A  
Sbjct: 156 KLAHRFGAEGGAKVVLGAGDTFRAAAAEQLEEWARRAGADIVRADSDKARPDTVLYQAVD 215

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A     D+++ DT+GRLH N  LM  + K  R + +    APH VL VLD TTG N L 
Sbjct: 216 AAVRGGADLVLCDTSGRLHTNWSLMDELAKCKRSIAKRLDGAPHEVLLVLDGTTGLNMLN 275

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+     TG+I+TK+DGTARGG ++ +V    +PV F+GVGEG+ DL+PF    F 
Sbjct: 276 QAKEFNETVQLTGIILTKLDGTARGGAVVSVVDELGVPVKFVGVGEGVQDLQPFQPATFV 335

Query: 308 AVIT 311
             + 
Sbjct: 336 DALF 339


>gi|309811467|ref|ZP_07705249.1| signal recognition particle protein [Dermacoccus sp. Ellin185]
 gi|308434518|gb|EFP58368.1| signal recognition particle protein [Dermacoccus sp. Ellin185]
          Length = 538

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 143/322 (44%), Gaps = 34/322 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL +        ++   L+ +D+ + V ++    +  +   
Sbjct: 2   FNSLSDRLTATFANLKGKGRLTESDINATIRDIRMALLDADVALPVVKQFTRGVRERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT  GKL
Sbjct: 62  AEVSQALNPGQQVVKIVNEELVAILGGQTRSIQY-AKTGPTVIMLAGLQGSGKTTFAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE------------------ 173
           ++++ D G   +L A D  R  A+ QL++  +R        E                  
Sbjct: 121 ARRLRDEGHFPVLVAADLQRPNAVRQLEVVGERAGVPVFAPERGNEGGHDAVSETGEGTR 180

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D   +A     QA+ ++ DV+I+DTAGRL  +  LM     +   ++      P+ V
Sbjct: 181 SHGDPVWVAQAGVAQAKVRQYDVVIVDTAGRLAVDENLMQQAADIREAIQ------PNEV 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+DA  GQ A+     F      TG++++K+DG ARGG  + +      P+ F   GE
Sbjct: 235 LFVIDAMIGQAAIETAIAFQDGVDFTGVVLSKLDGDARGGAALSVASVTGRPIMFASTGE 294

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
           G+ D+E F     ++ I    D
Sbjct: 295 GVKDIEVFHPDRMASRILDMGD 316


>gi|256618148|ref|ZP_05474994.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis ATCC 4200]
 gi|256597675|gb|EEU16851.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis ATCC 4200]
          Length = 331

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 23  EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 82

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 83  VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 142

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 143 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 202

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 203 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 262

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 263 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 320


>gi|190573381|ref|YP_001971226.1| putative signal recognition protein (signal recognition
           particle-like) [Stenotrophomonas maltophilia K279a]
 gi|254521454|ref|ZP_05133509.1| signal recognition particle protein [Stenotrophomonas sp. SKA14]
 gi|190011303|emb|CAQ44916.1| putative signal recognition protein (signal recognition
           particle-like) [Stenotrophomonas maltophilia K279a]
 gi|219719045|gb|EED37570.1| signal recognition particle protein [Stenotrophomonas sp. SKA14]
          Length = 458

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   I  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P +IL+ G+ G GKTT +GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELTAVMGAEASDLNLNVPA-PAIILMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QLK  A++    F  S       A+   A   A+
Sbjct: 121 AKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  +  +MA I  +   +           L V+DA TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPA------ETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+GV E    L+ F     ++ I
Sbjct: 235 AFGDALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|254796903|ref|YP_003081740.1| signal recognition particle-docking protein FtsY [Neorickettsia
           risticii str. Illinois]
 gi|254590139|gb|ACT69501.1| signal recognition particle-docking protein FtsY [Neorickettsia
           risticii str. Illinois]
          Length = 309

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 182/302 (60%), Gaps = 2/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            S    +    A +   L  GI +I +  ++ +   E+LE+LL+ +DIG  V ++IV+ +
Sbjct: 3   KSVFSSIRNSIAKSRDYLSSGIDNIFAKEKISESTIEQLEELLLSADIGPTVTERIVKAV 62

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              +     S+++V     E I K+L P SK   +  +  P VI+  GVNG GKTT IGK
Sbjct: 63  KKIKVKDGESLEQVKSITREQIRKVLDPTSKKLIFPQTG-PQVIVFCGVNGNGKTTTIGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K       VM+AA D FR+AAI+QL+ WA+R SA F  SE   +A+  AY+A ++A 
Sbjct: 122 LAYKFIQENKTVMIAACDLFRAAAIEQLRFWAERVSATFFSSETSKNASGTAYKALEKAL 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             KVD LIIDT+GRLH  + LM  + K+ RVL +L P APH V+  LDA+TGQNAL QV+
Sbjct: 182 EDKVDALIIDTSGRLHTQNDLMEELKKICRVLSKLMPSAPHEVILALDASTGQNALNQVQ 241

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH-KIPVYFLGVGEGINDLEPFVAKDFSAV 309
           +F      TGL++TK+DGT++GG ++ I   +  + +YF+G GE I DLE F + +F   
Sbjct: 242 VFKDAVNLTGLVVTKLDGTSKGGVIVAIAERYPNLGIYFVGTGEKITDLEEFSSSEFVDA 301

Query: 310 IT 311
           + 
Sbjct: 302 LL 303


>gi|3746903|gb|AAC64109.1| signal recognition particle 54 kDa subunit precursor [Pisum
           sativum]
          Length = 525

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/311 (30%), Positives = 154/311 (49%), Gaps = 17/311 (5%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KLK    ++++   + + +R+ +     R+D+ + V ++ V+ 
Sbjct: 35  RAEMFGQLTSGLESAWNKLKR--EEVLTKENIVEPMRD-IRRA--RADVSLPVVRRFVQS 89

Query: 70  LLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  K     V+      Q+++  V + + +++        +  S  P VIL+ G+ GVGK
Sbjct: 90  VTDKAVGVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFANSG-PTVILLAGLQGVGK 148

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TTV  KL+      G   ML AGD +R AAID L I   +       +      + +A +
Sbjct: 149 TTVCAKLATYFKKQGKSCMLVAGDVYRPAAIDXLTILGKQVDVPVYAAGTDVKPSVIAKQ 208

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
            F++A+ KK+DV+I+DTAG L  +  +M  + ++ +VL       P  VL V+DA TGQ 
Sbjct: 209 GFEEAKKKKIDVVIVDTAGSLQIDKAMMDELKEVKQVLN------PTEVLLVVDAMTGQE 262

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + +      P+  +G GE + DLEPF   
Sbjct: 263 AAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPD 322

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 323 RMAGRILGMGD 333


>gi|291522185|emb|CBK80478.1| signal recognition particle-docking protein FtsY [Coprococcus catus
           GD/7]
          Length = 312

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 181/308 (58%), Gaps = 4/308 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++ E   +  +L +G   T   +  G   I S    +D+   EELE++L+ +D+G+   +
Sbjct: 1   MSEEKKGFFSRLVEGLTKTRNNIMSGFDAIFSGFSNIDEDFYEELEEVLVMADLGIHTTE 60

Query: 65  KIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            I+EEL  K   + +   Q     +++ I + +    +   + F H+  V+LV+GVNGVG
Sbjct: 61  NIIEELKRKVKEQHIKEPQACKQLLADTIKEQMRVDEEA--YQFEHQTSVVLVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ +   AG KV+LAA DTFR+AAI+QL  WA R   D +  + GSD A++ Y
Sbjct: 119 KTTTIGKLAGQYKKAGKKVVLAAADTFRAAAIEQLTEWAHRAGVDIIAGQEGSDPASVIY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+K D+L+ DTAGRLHN   LM  + K+ R+++R  P A    L VLD TTGQ
Sbjct: 179 DAIAAAKARKADILLCDTAGRLHNKKNLMEELKKINRIIEREYPEAYRENLIVLDGTTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F   A  TG+++TK+DGTA+GG  I I     +PV ++G+GE I DL+ F  
Sbjct: 239 NALVQAKQFKETADITGIVLTKLDGTAKGGIAIAIQAELGVPVKYIGIGEKIEDLQKFDT 298

Query: 304 KDFSAVIT 311
             F   + 
Sbjct: 299 DAFVDALF 306


>gi|294664958|ref|ZP_06730270.1| signal recognition particle protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605265|gb|EFF48604.1| signal recognition particle protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 458

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   +  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTMERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELTAVMGAAATDLNLNV-LAPAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QLK  A++    F  S+       +   A   A+
Sbjct: 121 AKHLKEKRKKKVMVVSADIYRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  ++ +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDAAMMDEIKTLHAAVN------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+G GE  + L+ F     ++ I
Sbjct: 235 AFGEALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVFHPDRVASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|257417223|ref|ZP_05594217.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis AR01/DG]
 gi|257159051|gb|EEU89011.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis ARO1/DG]
          Length = 331

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 23  EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 82

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 83  VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINIQPNGLTVILFVGVNGVGKTTSIG 142

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 143 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 202

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 203 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 262

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 263 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 320


>gi|315031782|gb|EFT43714.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis TX0017]
          Length = 442

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 254 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 313

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 314 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 374 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 431


>gi|312906717|ref|ZP_07765717.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis DAPTO 512]
 gi|312910822|ref|ZP_07769658.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis DAPTO 516]
 gi|310627365|gb|EFQ10648.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis DAPTO 512]
 gi|311288845|gb|EFQ67401.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis DAPTO 516]
          Length = 442

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 124/298 (41%), Positives = 180/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 254 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 313

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + ++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 314 KTEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 374 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 431


>gi|256958375|ref|ZP_05562546.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis DS5]
 gi|257078314|ref|ZP_05572675.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis JH1]
 gi|256948871|gb|EEU65503.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis DS5]
 gi|256986344|gb|EEU73646.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis JH1]
          Length = 331

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 126/298 (42%), Positives = 182/298 (61%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 23  EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 82

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 83  VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 142

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R S + V    G D AA+ ++A ++A
Sbjct: 143 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERASVEVVRGNAGGDPAAVVFDAVERA 202

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 203 KAEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 262

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 263 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 320


>gi|225374439|ref|ZP_03751660.1| hypothetical protein ROSEINA2194_00054 [Roseburia inulinivorans DSM
           16841]
 gi|225213677|gb|EEG96031.1| hypothetical protein ROSEINA2194_00054 [Roseburia inulinivorans DSM
           16841]
          Length = 312

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 127/317 (40%), Positives = 182/317 (57%), Gaps = 7/317 (2%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++ E   +  +L  G + T   +  GI  + +    +DD   EE+E++LI  DIGV   +
Sbjct: 1   MSEEKKGFWSRLVSGLSKTRDNIVSGIDAVFNGFSNIDDDFYEEIEEILIMGDIGVNATE 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVG 123
            I+E L  K     +       ++  LI+ +   +      + F +   V+LV+GVNGVG
Sbjct: 61  AIIENLKKKVKENHIKDPAECKEL--LINSIKEQMDVGETAYRFENEKSVVLVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ K+ D G KV+LAA DTFR+AA  QL+ WA+R   + +  + G+D  A+ Y
Sbjct: 119 KTTSVGKLAGKLKDQGKKVVLAAADTFRAAAGTQLQEWANRAGVEMIGGQEGADPGAIVY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+  DVL+ DTAGRLHN   LM  + K+ R+L++  P A    L VLDATTGQ
Sbjct: 179 DAVAAAKARNADVLLCDTAGRLHNKKNLMEELRKINRILEKEYPDAFRETLVVLDATTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F  VA  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I DL+ F +
Sbjct: 239 NALAQAREFADVADITGIILTKMDGTAKGGIAVAIHSELGIPVKYIGVGETIEDLQKFDS 298

Query: 304 KDFSAVITGCLDYGEEK 320
             F   +    D  E+K
Sbjct: 299 NQFVNAL---FDVQEDK 312


>gi|307297779|ref|ZP_07577585.1| signal recognition particle protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306917039|gb|EFN47421.1| signal recognition particle protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 438

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 145/304 (47%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL      +    R+ +       ++++  L+ +D+   V ++ +  +  K   
Sbjct: 2   FENLQEKLGRAFKLLSGKGRISEKNIEDAVKQVKLSLLEADVNYKVVKEFIGGITEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V + + KML   S P     S +P  I++VG+ G GKTT   KL
Sbjct: 62  EEVLKSFTPDQQFIKIVRDELIKMLGEKSVPLKL--SSQPSKIMMVGLQGSGKTTTTAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              +   G K +L A D +R AAIDQL     +        +   +   +  EA +QA  
Sbjct: 120 GTLLRKEGRKPLLVAADVYRPAAIDQLMQLGKQIDMPVFTGD-RKNPVKIVQEAMQQAVR 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRLH +  +M  + +++  +K      P  +L V+DA TGQ+A+   + 
Sbjct: 179 NINDVVILDTAGRLHIDDAMMRELKEIVSAVK------PDEILMVVDAMTGQDAVNSAKA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     +G ++TK+DG ARGG ++ I      PV F+G+ E  + +E F     +  I 
Sbjct: 233 FNEALELSGFVVTKLDGDARGGVILSIRHVTGKPVKFIGISEKPDGIEAFHPDRVAGRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|312381041|gb|EFR26883.1| hypothetical protein AND_06742 [Anopheles darlingi]
          Length = 560

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++ V +    E+   L+ +D+ + + +K+ E + +    
Sbjct: 3   LADLGRKITNALHSLSKATIINEEVLDSMLKEICTALLEADVNIRLVKKLRENVRSVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      RP+VI+ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQ-PIKGRPNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +  +  + 
Sbjct: 122 AYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVVIAQDGVEMFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  + +I+DT+GR      L      M+ V   +DP    +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEFIIVDTSGRHKQEESLFEE---MLAVANAVDP---DNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKEKVDIGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKTKPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|253578966|ref|ZP_04856237.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849909|gb|EES77868.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 316

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 125/308 (40%), Positives = 178/308 (57%), Gaps = 4/308 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +A E   + ++L  G A T   +  G   I S    +D+   EELE++LI  DIG+    
Sbjct: 1   MAEEKKGFFKRLVSGLAKTRDNIVAGFDSIFSGFSSIDEDFYEELEEILIMGDIGINATT 60

Query: 65  KIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            I+E L  +   + +         +   I   +   S    ++F +R  V+LV+GVNGVG
Sbjct: 61  SIIENLKKEVSERHIKEPMECKQLLINEIKDQMRVDSTE--YEFENRRSVVLVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ K+ D G KV+LAA DTFR+AA +QL  WA+R   + +  + G+D A++ Y
Sbjct: 119 KTTSVGKLAGKLKDQGKKVILAAADTFRAAAGEQLTEWANRAGVEIIGGQAGADPASVIY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+  DVL+ DTAGRLHN   LM  + K+ R+L+R  P A    L VLD TTGQ
Sbjct: 179 DAVAAAKARNADVLLCDTAGRLHNKKNLMEELRKIYRILEREYPDAYLETLVVLDGTTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F  VA  +G+I+TK+DGTA+GG  + I     IPV ++GVGE I+DL+ F A
Sbjct: 239 NALAQARQFAEVANVSGIILTKLDGTAKGGIAVAIQSELDIPVKYIGVGESIDDLQKFDA 298

Query: 304 KDFSAVIT 311
             F   + 
Sbjct: 299 DAFVNALF 306


>gi|300868308|ref|ZP_07112936.1| signal recognition particle-docking protein FtsY [Oscillatoria sp.
           PCC 6506]
 gi|300333688|emb|CBN58120.1| signal recognition particle-docking protein FtsY [Oscillatoria sp.
           PCC 6506]
          Length = 644

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 182/321 (56%), Gaps = 17/321 (5%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ E ++W++KL +G   T   L   +  I+    L+     E+E LL+++D+GV    
Sbjct: 325 QISFEEITWLQKLRQGLERTRRSLINQLKAIVGQGPLNQDAVIEIESLLLQADVGVEATD 384

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP------------- 111
            IV  L  K   + +  ++ +  + +L+ ++L    KP     S  P             
Sbjct: 385 IIVNALQQKLREEVLPPEQAIAYLKKLLRELL---DKPCQESASGNPAYSLTFAPEKDTL 441

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           ++ L+VGVNG GKTT IGK++     +  + ++AA DTFR+AA++Q+K+W  R+  + + 
Sbjct: 442 NIWLIVGVNGAGKTTTIGKIAHLAQKSDYRTLIAAADTFRAAAVEQVKVWGARSDVEVIA 501

Query: 172 SE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
           +    +D AA+ ++A   AQ++  ++LI+DTAGRL N   LM  + K+ R++ +  P A 
Sbjct: 502 NPGKNTDPAAVVFDAIAAAQSRNTELLIVDTAGRLQNKKNLMDELSKIRRIIDKKAPGAV 561

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VLDAT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G
Sbjct: 562 VESLLVLDATLGQNGLRQAEVFSEAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIG 621

Query: 291 VGEGINDLEPFVAKDFSAVIT 311
           VGE I DL PF + +F   + 
Sbjct: 622 VGESIEDLRPFSSYEFVEALL 642


>gi|125973443|ref|YP_001037353.1| signal recognition particle-docking protein FtsY [Clostridium
           thermocellum ATCC 27405]
 gi|256005339|ref|ZP_05430304.1| signal recognition particle-docking protein FtsY [Clostridium
           thermocellum DSM 2360]
 gi|281417643|ref|ZP_06248663.1| signal recognition particle-docking protein FtsY [Clostridium
           thermocellum JW20]
 gi|125713668|gb|ABN52160.1| signal recognition particle-docking protein FtsY [Clostridium
           thermocellum ATCC 27405]
 gi|255990658|gb|EEU00775.1| signal recognition particle-docking protein FtsY [Clostridium
           thermocellum DSM 2360]
 gi|281409045|gb|EFB39303.1| signal recognition particle-docking protein FtsY [Clostridium
           thermocellum JW20]
 gi|316940320|gb|ADU74354.1| signal recognition particle-docking protein FtsY [Clostridium
           thermocellum DSM 1313]
          Length = 302

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 186/303 (61%), Gaps = 4/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL +G   T   + E I  ++ S  ++D+ + EELE++LI SD+G+  + KI+E 
Sbjct: 1   MGFFDKLKEGLKKTKNTITERIDKVLVSFGKIDEELFEELEEILITSDVGIDTSMKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +      +    + ++  E + ++L         D +  P VILVVGVNGVGKTT I
Sbjct: 61  LKNRVKETKTTDPAKVKELLKEELAQILSQGESDLKLDTT--PSVILVVGVNGVGKTTSI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++  +   G KV+LAAGDTFR+AAIDQL+IWA+R   + +    GSD AA+ Y+A + 
Sbjct: 119 GKIANLLKSQGKKVILAAGDTFRAAAIDQLEIWANRVGVEIIKQAEGSDPAAVIYDAIQA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+K DVLI DTAGRLH    LM  + K+ R++ R  P     VL VLDATTGQNA+ Q
Sbjct: 179 VKARKADVLICDTAGRLHTKKNLMEELKKVFRIVDRELPGVSREVLLVLDATTGQNAISQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F  V   TG+++TK+DGTA+GG +I +     IPV  +GVGE ++DL+ F A++F  
Sbjct: 239 AKTFSEVTDVTGIVLTKLDGTAKGGIIIAVASELNIPVKLIGVGEQMDDLQRFNAREFVE 298

Query: 309 VIT 311
            + 
Sbjct: 299 ALF 301


>gi|332074900|gb|EGI85372.1| signal recognition particle protein [Streptococcus pneumoniae
           GA41301]
          Length = 487

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/272 (28%), Positives = 128/272 (47%), Gaps = 13/272 (4%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNW 105
             L+ +D+ + V +  ++++  +    +V       Q+++  V E +  +L   +     
Sbjct: 1   MALLEADVALPVVKDFIKKVRERAVGHEVIDTLNPAQQIIKIVDEELTAVLGSDTAEI-I 59

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADR 164
                P +I++VG+ G GKTT  GKL+ K+      + ++ A D +R AAIDQLK    +
Sbjct: 60  KSPKIPTIIMMVGLQGAGKTTFAGKLANKLKKEENARPLMIAADIYRPAAIDQLKTLGQQ 119

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                        A  +  +  +QAQ    D ++IDTAGRL  + +LM  +  +  +   
Sbjct: 120 IDVPVFALGTEVPAVEIVRQGLEQAQTNHNDYVLIDTAGRLQIDELLMNELRDVKAL--- 176

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P+ +L V+DA  GQ A      F+A    TG+I+TK+DG  RGG  + +      
Sbjct: 177 ---AQPNEILLVVDAMIGQEAANVAREFNAQLEVTGVILTKIDGDTRGGAALSVRHITGK 233

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           P+ F G GE I D+E F     S+ I G  D 
Sbjct: 234 PIKFTGTGEKITDIETFHPDRMSSRILGMGDM 265


>gi|238916988|ref|YP_002930505.1| signal recognition particle receptor [Eubacterium eligens ATCC
           27750]
 gi|238872348|gb|ACR72058.1| signal recognition particle receptor [Eubacterium eligens ATCC
           27750]
          Length = 311

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 179/312 (57%), Gaps = 4/312 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL +G   T   +  GI  + S    +DD   +ELE+ LI  DIGV   ++I+++
Sbjct: 1   MGFFSKLKEGLTKTRDNIVSGIDSVFSGFSSIDDDFYDELEETLIMGDIGVVATEEILDD 60

Query: 70  LLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K     +         + + I + +        ++F +R  +++++GVNGVGKTT +
Sbjct: 61  LKNKVKENKIKNPADCKQLLIDSIKEKMN--LGENAYEFENRKSIVMLIGVNGVGKTTSV 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  +     KV++AA DTFR+AAI+QL  W++RT AD +    GSD AA+ Y++   
Sbjct: 119 GKLAGLLKAQNKKVIMAAADTFRAAAIEQLTEWSNRTGADIIAQSEGSDPAAVIYDSIAA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+K DVL+ DTAGRL N   LM  + K+ RV++R    A    L VLDATTGQNAL Q
Sbjct: 179 CKARKADVLLCDTAGRLQNKKNLMEELRKIDRVIEREYSDAYRENLIVLDATTGQNALSQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           +  F+ V   TG+I+TKMDGTA+GG  + I     IPV ++GVGE + DL+ F +  F  
Sbjct: 239 LREFNDVTNITGIILTKMDGTAKGGIAVAIQAEFGIPVKYIGVGEKVEDLQKFDSDTFVN 298

Query: 309 VITGCLDYGEEK 320
            +    +  +E 
Sbjct: 299 ALFDVDNGSDED 310


>gi|91974990|ref|YP_567649.1| signal recognition particle protein [Rhodopseudomonas palustris
           BisB5]
 gi|91681446|gb|ABE37748.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Rhodopseudomonas palustris BisB5]
          Length = 517

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 140/305 (45%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL   +  +     L +   +    E+   L+ +D+ + V +   E++  +   
Sbjct: 2   FDNLSEKLGGILDRLTGRGSLSEADVDAAMREIRRALLEADVALEVVRSFTEKVREQAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++ +  ML   S+  + +       I++VG+ G GKTT   KL
Sbjct: 62  ATVVKSVKPGQMVVKIVNDELIAMLGSDSQAIDLNAVAPVP-IMMVGLQGSGKTTTTAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++M      KV++A+ D +R AA++QL +       D +   +G     +A  A +  +
Sbjct: 121 ARRMTQRDKRKVLMASLDVYRPAAMEQLAVLGRDLEIDTLPIVVGQKPQDIARRAMEAGR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  +M+   ++           PH VL V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRTTLDEDMMSEAAEIKAAAN------PHEVLLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE  + LE F     +  I
Sbjct: 235 AFDERVGLTGIVLTRIDGDGRGGAALSMRAVTGKPIKLMGTGEKTDALEDFHPSRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|300024816|ref|YP_003757427.1| signal recognition particle protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526637|gb|ADJ25106.1| signal recognition particle protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 526

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +     L +  V E   E+   L+ +D+ + V +   E++  K   
Sbjct: 2   FQSLSDRLSGVLDKLTRRGALTESDVVEAMREVRRALLEADVALDVVKDFTEKVKAKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V++ +  ML   ++P +   +  P  IL+VG+ G GKTT   K+
Sbjct: 62  AEVLRSVTPGQMVVKIVNDELVAMLGSDAQPIDLHAA-PPVGILMVGLQGSGKTTTTAKI 120

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + ++++    KV++A+ DT R AA +QL++  ++TS   +    G     +A  A   A+
Sbjct: 121 AYRLTNRDRKKVLMASLDTRRPAAQEQLRVLGEQTSVATLPIVAGQTPLQIARRAEDAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I DTAGR+  +  LM  +  +   +       PH  L V D+ TGQ+A+   +
Sbjct: 181 LGGFDVIIYDTAGRVTVDEELMDEVRDVKAAIH------PHETLLVADSLTGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+ DG  RGG  + +      P+  +GVGE  + LE F     ++ I
Sbjct: 235 AFDGRIGVTGIVLTRADGDGRGGAALSMRAVTGKPIKLIGVGEKWDALEDFHPGRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|188578077|ref|YP_001915006.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522529|gb|ACD60474.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 460

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   +  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   
Sbjct: 4   FESLTQRLSGTMERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P ++L+ G+ G GKTT +GKL
Sbjct: 64  QEVLKSLTPGQALIKIVRDELTAVMGAAAADVNLNVPA-PAIVLMAGLQGAGKTTTVGKL 122

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QLK  A++    F  S+       +   A   A+
Sbjct: 123 AKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDAR 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  + ++M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 183 KSFVDVLLVDTAGRLAIDQVMMDEIKALHAAVN------PTETLFVVDAMTGQDAANTAK 236

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+G GE  + L+ F     ++ I
Sbjct: 237 AFGEALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVFHPDRVASRI 296

Query: 311 TGCLD 315
               D
Sbjct: 297 LDMGD 301


>gi|256960442|ref|ZP_05564613.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis Merz96]
 gi|256950938|gb|EEU67570.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecalis Merz96]
          Length = 331

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 124/298 (41%), Positives = 180/298 (60%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 23  EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 82

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 83  VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 142

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 143 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERA 202

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + ++ DVL++DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q 
Sbjct: 203 KTEQADVLLVDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQA 262

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 263 KQFKETTDVTGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 320


>gi|291295393|ref|YP_003506791.1| signal recognition particle protein [Meiothermus ruber DSM 1279]
 gi|290470352|gb|ADD27771.1| signal recognition particle protein [Meiothermus ruber DSM 1279]
          Length = 434

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 140/305 (45%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +++  +  +    R+ +        E+   L+ +D+   VA+  V ++  K   
Sbjct: 2   FESLSQRIRAAVDKLRGRGRITEADLKATLREIRMSLLEADVNFEVAKNFVNKVQEKTLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       +++L  V E + +ML   +K       +  ++  +VG+ G GKTT  GKL
Sbjct: 62  QAVLESLTPAEQILSVVYEELVEMLGGEAKQ--PLLKNEGNLWFMVGLQGSGKTTTSGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL+I  ++     +    G           +    
Sbjct: 120 AHFYKSKGRRPLLVAADTQRPAAREQLRILGEKIGVPVLEVADGERPETTRARLQQHLTF 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRL  +  LM  + ++ +V+       P   L V+D+ TGQ AL   + 
Sbjct: 180 DYRDLVIVDTAGRLQIDQALMDELAQLKQVMG------PSETLLVVDSMTGQEALNVSKA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGLI+TK+DG ARGG  +        P+YF GV E +  LEPF     +  I 
Sbjct: 234 FDERIGVTGLILTKLDGDARGGAALSARYVTGKPIYFAGVSEKVEGLEPFYPDRLAQRIL 293

Query: 312 GCLDY 316
           G  D 
Sbjct: 294 GMGDL 298


>gi|226941400|ref|YP_002796474.1| Ffh [Laribacter hongkongensis HLHK9]
 gi|226716327|gb|ACO75465.1| Ffh [Laribacter hongkongensis HLHK9]
          Length = 450

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   I  +    RL +D +++   E+   L+ +D+ + V +  V ++  +   
Sbjct: 2   FDTLSNRLSGVIKTLKGHARLTEDNIKDAMREVRMALLEADVALPVVKAFVNQVRERAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V E + K++   +   N      P ++L+ G+ G GKTT  GKL
Sbjct: 62  QEVMGSLTPGQAVVGVVHEELVKLMGEQNDSLNLAAV-PPAIVLMAGLQGAGKTTTTGKL 120

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K +L  + D +R AAI+QLK+ A +   ++  S +G     +A  A   A+
Sbjct: 121 AKLLKEKSKKKVLLVSTDVYRPAAIEQLKLLAGQVEVEWFPSSVGQLPVDIARAAVDHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLI+DTAGRL  +  +M  I  +   +       P   L V+DA  GQ+A+   +
Sbjct: 181 RHYFDVLIVDTAGRLAIDEAMMNEIKAIHAAIN------PVETLFVVDAMQGQDAVNTAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG ARGG  + +      P+ F+GVGE +  LEPF     ++ I
Sbjct: 235 AFNEALPLTGVVLTKLDGDARGGAALSVRNVTGKPIKFIGVGEKLTGLEPFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|86747479|ref|YP_483975.1| signal recognition particle protein [Rhodopseudomonas palustris
           HaA2]
 gi|86570507|gb|ABD05064.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Rhodopseudomonas palustris HaA2]
          Length = 514

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 140/305 (45%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL   +  +     L +   +    E+   L+ +D+ + V +   +++  +   
Sbjct: 2   FDNLSEKLGGILDRLTGRGSLSEADVDAAMREIRRALLEADVALEVVRSFTDKVREQAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++ +  ML   S+  + +       I++VG+ G GKTT   KL
Sbjct: 62  ATVVKSVKPGQMVVKIVNDELIAMLGSDSQAIDLNAVAPVP-IMMVGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++M+     KV++A+ D +R AA++QL +     S D +    G     +A  A +  +
Sbjct: 121 ARRMTSRDKRKVLMASLDVYRPAAMEQLAVLGRDLSIDTLPIVAGQKPPDIARRAMEAGR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  +M    ++           PH VL V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRTTLDEDMMTEAAEIKAAAN------PHEVLLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE  + LE F     +  I
Sbjct: 235 AFDERVGLTGIVLTRIDGDGRGGAALSMRAVTGKPIKLMGTGEKTDALEDFHPSRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|218961871|ref|YP_001741646.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730528|emb|CAO81440.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Candidatus Cloacamonas acidaminovorans]
          Length = 446

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 148/304 (48%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +   ++     L +        E+   L+ +D+   + +  + E+  +   
Sbjct: 2   FENLSERLDKIFRNLRGKGYLTEDNIKAGLREVRMALLEADVNFRIVKNFIAEVEKRALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V E +  ++      F   F++R   +++VG+ G GKTT   KL
Sbjct: 62  VEVMKSLTPGQQVVKIVYEQLVNLMDTEGFQFKV-FNNRLTKVMLVGLQGSGKTTACAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G+K ML A D +R AA+DQLKI   +     V SE   +   +A  A   A  
Sbjct: 121 AAFYRKKGIKPMLVACDVYRPAAVDQLKILGKQIGIPVV-SEDTKNVLKIADSALSMADK 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + V++LI DTAGRLH +  +M  + ++   +K      P  +  V DATTGQ+A+   + 
Sbjct: 180 EMVNLLIFDTAGRLHIDEPMMEEVARLKTHIK------PDYIFFVADATTGQDAVTIAKE 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+       +I+TK+DG ARGG  + I      PV F+G+GE I+DLE F     ++ I 
Sbjct: 234 FYDKLAFDAVILTKLDGDARGGAALSIKAVTGKPVAFVGIGEKISDLEIFYPDRMASRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|319899458|ref|YP_004159555.1| signal recognition particle protein [Bartonella clarridgeiae 73]
 gi|319403426|emb|CBI76994.1| signal recognition particle protein [Bartonella clarridgeiae 73]
          Length = 519

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   ++++     L D        E+   L+ +D+ + V +   +++  K   
Sbjct: 2   FESLQERLGSILSNLTGRGVLSDQDITTALREIRRALLEADVALDVVRSFTDKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +       Q V+  V + +  ML   S   + + +  P VI++VG+ G GKTT   KL
Sbjct: 62  AAIVKSIKPGQMVVKIVHDELVHMLGSESVLSDLN-APAPVVIMLVGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+++D    KV++A+ DT R AA +QL+    +   D +       A  ++  A + A+
Sbjct: 121 AKRLTDKHNKKVLMASLDTRRPAAQEQLRQLGKQVQIDSLPIIPDQSAVDISTRALQAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR H +  LM  + ++           P+ ++ V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRNHIDEALMLELIEIKA------SSQPYEIMLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+I+T+M+   RGG  + +      P+  +G GE ++ LE F  +  +  I
Sbjct: 235 SFNERIGITGIILTRMESDGRGGAALSMRAVTGKPIKAIGTGEKMDALEEFHPRRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|295111640|emb|CBL28390.1| signal recognition particle-docking protein FtsY [Synergistetes
           bacterium SGP1]
          Length = 309

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 117/305 (38%), Positives = 179/305 (58%), Gaps = 6/305 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +++  +L +G      +   GI  + S    DD   EELED LI  D+GV +++++VE L
Sbjct: 1   MAFFARLKEGLKGVKERWSGGIARLFSGSSFDDAFWEELEDRLIAGDVGVELSEELVESL 60

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLM---PLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
             +  A+ ++    L DV  E I   L+    + KPF  + +  P V+L+VGVNG GKTT
Sbjct: 61  KGEVRARGIASPEALRDVFVERITAELLSVPGMGKPFETEPA--PQVLLMVGVNGSGKTT 118

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL+ +    G  V+LAA DTFR+AA++QL+IW +R     V    GSD AA+A++A+
Sbjct: 119 SAGKLALQFKGQGKGVVLAAADTFRAAAVEQLQIWGERVGVRVVAQGQGSDPAAVAFDAW 178

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A++   D+LI+DTAGRLH+   LM  + K+ RVL R         + VLDA  GQN++
Sbjct: 179 QAARSAGADLLIVDTAGRLHDKHNLMEELRKIQRVLVREAGEDRVQTVLVLDAVLGQNSV 238

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q E F+++   + +++TK D TA+GG ++ I    +IPV  +G+GE   DL PF   +F
Sbjct: 239 AQAETFNSILPVSSIVLTKYDNTAKGGVVLAIARRLRIPVRCIGLGEAPEDLSPFDPAEF 298

Query: 307 SAVIT 311
           +A + 
Sbjct: 299 AAALM 303


>gi|154491073|ref|ZP_02031014.1| hypothetical protein PARMER_00992 [Parabacteroides merdae ATCC
           43184]
 gi|154088821|gb|EDN87865.1| hypothetical protein PARMER_00992 [Parabacteroides merdae ATCC
           43184]
          Length = 441

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSERLDRSFKLLKGEGKITEINVAETLKDVRKALLDADVNYKVAKGFTDTVKAKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   + D    P +IL+ G+ G GKTT  GKL
Sbjct: 62  QNVLTSVKPSQLMVKIVHDELADLMGGTAT--DLDLKGSPAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L AA D +R AAI+QL++  ++            +  A+A  A ++A+
Sbjct: 120 ANLLKTKKNKKPLLAACDVYRPAAIEQLRVVGEQVGVPVYMELENKNPVAIAMNAIREAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I  +   ++      P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGNDVVIVDTAGRLAIDEQMMKEIAAIKSAIQ------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F  +  +  I
Sbjct: 234 EFNERLDFDGVVLTKLDGDTRGGAALSIRTVVDKPIKFVGTGEKMDALDIFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|84622872|ref|YP_450244.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84366812|dbj|BAE67970.1| signal recognition particle protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 458

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   +  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTMERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P ++L+ G+ G GKTT +GKL
Sbjct: 62  QEVLKSLTPGQALIKIVRDELTAVMGAAAADVNLNVPA-PAIVLMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QLK  A++    F  S+       +   A   A+
Sbjct: 121 AKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  + ++M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDQVMMDEIKALHAAVN------PTETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK DG ARGG  + +      P+ F+G GE  + L+ F     ++ I
Sbjct: 235 AFGEALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVFHPDRVASRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|297530630|ref|YP_003671905.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           C56-T3]
 gi|297253882|gb|ADI27328.1| signal recognition particle-docking protein FtsY [Geobacillus sp.
           C56-T3]
          Length = 328

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 185/311 (59%), Gaps = 6/311 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K   ++ +   K  +G + T   L   + D+I+  R++D+   EELE++LI +D+GV 
Sbjct: 8   KEKWTKQADAVTEKFKEGLSKTRNSLAGKVNDLIARYRKVDEEFFEELEEILIVADVGVT 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF----SHRPHVILV 116
              ++V+EL  +   +++     + DV +E +  +    +                VIL 
Sbjct: 68  TVMELVDELKMEVKRRNIQDPAQMRDVIAEKLVDIYRAGADDKELSALNIQEGGLTVILF 127

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ K+   G  V+LAAGDTFR+ AI+QL+ W +R   D +    GS
Sbjct: 128 VGVNGVGKTTTIGKLAHKLKSEGKSVLLAAGDTFRAGAIEQLEAWGERVGVDVIKQAAGS 187

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV+ R  P APH VL V
Sbjct: 188 DPAAVMYDAIQAAKARGVDVLLCDTAGRLQNKVNLMKELEKVKRVISREVPGAPHEVLLV 247

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q ++F      TG+++TK+DGTA+GG ++ I     IPV  +G+GE ++
Sbjct: 248 LDATTGQNAMSQAKLFKEATDVTGIVLTKLDGTAKGGIVLAIRNEMAIPVKLVGLGEKMD 307

Query: 297 DLEPFVAKDFS 307
           DL+ F  + + 
Sbjct: 308 DLQVFDPEQYV 318


>gi|218666438|ref|YP_002427127.1| signal recognition particle-docking protein FtsY [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518651|gb|ACK79237.1| signal recognition particle-docking protein FtsY [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 316

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 113/303 (37%), Positives = 179/303 (59%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                +L +G A +  +L  G+  + +  + +D  + EELE LL+++D+G A  +++++ 
Sbjct: 10  KGLFSRLRQGLARSREQLAGGVGRLVLGKKVIDADLLEELEALLLQADLGSAATREVMDS 69

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  +    +++    L   + E +  +L P ++P++ +  H   V+L+VG+NG GKTT I
Sbjct: 70  VTERVRRNELTDPAALQAALRESLLDILRPRAQPWSPEKGHS-QVLLMVGINGAGKTTTI 128

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +    G  V+LAAGDTFR+AA++QL+ W  R     V    G+D+A++ ++A   
Sbjct: 129 GKLAARWKAEGFTVVLAAGDTFRAAAVEQLQGWGRRAQVPVVAQGTGADSASVIFDALTT 188

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+  D+LI DTAGRLH    LM  + K+ RVL + DP AP  +  VLDA TGQNAL Q
Sbjct: 189 TRARGSDLLIADTAGRLHTQGHLMEELKKIRRVLGKQDPEAPQQIWLVLDAGTGQNALNQ 248

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              FH   G TG+ +TK+DGTA+GG +  I     IP+ ++GVGE + DL PF  + F  
Sbjct: 249 ARQFHDAVGLTGICITKLDGTAKGGVVAAIAKALPIPIRYIGVGEQVEDLRPFDPESFVD 308

Query: 309 VIT 311
            + 
Sbjct: 309 ALF 311


>gi|254472514|ref|ZP_05085914.1| signal recognition particle protein [Pseudovibrio sp. JE062]
 gi|211958797|gb|EEA93997.1| signal recognition particle protein [Pseudovibrio sp. JE062]
          Length = 518

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +     L +        E+   LI +D+ + + +   +++  +   
Sbjct: 2   FDNLSDRLGGILDKLTKRGALSESDVSEALREVRRALIEADVALPIVRSFTDKVKHRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + + +ML   S P + + +  P  I++VG+ G GKTT  GK+
Sbjct: 62  AEVVKSIKPGQMVVKIVHDQLVEMLGEESHPIDLN-APAPVCIMMVGLQGAGKTTATGKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++      KV++A+ DT R AA +QLK+  ++   D +    G     +A  A   A+
Sbjct: 121 ARRLTQRDKRKVLMASLDTRRPAAQEQLKVLGEQNEIDTLPIIEGQQPVDIAKRALNAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR H +  LM  + ++           PH VL V DA TGQ+A+   +
Sbjct: 181 LGGYDVVMLDTAGRGHIDEPLMVEMEQIKAASN------PHEVLLVADALTGQDAVNLAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++T+MDG  RGG  + +      P+  +G GE  + LE F  K  +  I
Sbjct: 235 SFDERCSITGIMLTRMDGDGRGGAALSMRAVTGKPIKLIGTGEKSDALEDFHPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|39933322|ref|NP_945598.1| signal recognition particle protein [Rhodopseudomonas palustris
           CGA009]
 gi|39652947|emb|CAE25689.1| signal recognition particle protein [Rhodopseudomonas palustris
           CGA009]
          Length = 516

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 139/305 (45%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL   +  +     L +   +    E+   L+ +D+ + V +   E +  +   
Sbjct: 2   FDNLSEKLGGILDRLTGRGALSEADVDAAMREIRRALLEADVALEVVRSFTERVREQAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++ +   L    +  + +    P  I++VG+ G GKTT   KL
Sbjct: 62  ATVVKSVKPGQMVVKIVNDELIATLGSEVQSIDLNAV-PPVPIMMVGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++M++    KV++A+ D +R AA++QL +       D +    G     +A  A +  +
Sbjct: 121 ARRMTERDKRKVLMASLDVYRPAAMEQLAVLGRDLQIDTLPIVAGQQPPDIARRAMEAGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  +M    ++           PH VL V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRTTLDEDMMTEAAEIKAAAN------PHEVLLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE  + LE F     ++ I
Sbjct: 235 AFDQRVGLTGIVLTRIDGDGRGGAALSMRAVTGKPIKLMGTGEKTDALEDFHPSRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|294055143|ref|YP_003548801.1| signal recognition particle protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614476|gb|ADE54631.1| signal recognition particle protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 453

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 144/305 (47%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + KL   + ++    +L +       +E+   L+ +D+   VA++ V  +  +   
Sbjct: 2   LENLTDKLGSALRNLRGVGKLTEENMEEALKEVRKALLSADVHFKVAREFVSNVKEQCVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  + + + K+L   +         +P  I++VG++G GKTT  GKL
Sbjct: 62  QEVLKSVTPGQQVIKIIHDELVKLLGEGTTELE---DKKPLRIMMVGLHGSGKTTSSGKL 118

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      +  L A D +R AAIDQL+  +     +F       +   +     + A+
Sbjct: 119 ANYLAKKRDYRPALIACDVYRPAAIDQLETLSQTVGCEFYGDREEKNVVTIGKRGLEAAK 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   +++I DTAGRL  +  L+  I  +   ++      P  VL V DA  GQ A+   +
Sbjct: 179 AADANLIIFDTAGRLQIDEDLIEEIKDLKAAVQ------PDEVLLVADAALGQEAVNVAK 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG+I+TK+DG ARGG  + +      P+ F+G+GE +++ + F     ++ I
Sbjct: 233 HFHEAVDVTGIILTKLDGDARGGAALSMKTITDTPIKFMGIGEKVDEFDVFHPDRMASRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|264680208|ref|YP_003280118.1| signal recognition particle protein [Comamonas testosteroni CNB-2]
 gi|299533984|ref|ZP_07047336.1| signal recognition particle protein [Comamonas testosteroni S44]
 gi|262210724|gb|ACY34822.1| signal recognition particle protein [Comamonas testosteroni CNB-2]
 gi|298717893|gb|EFI58898.1| signal recognition particle protein [Comamonas testosteroni S44]
          Length = 463

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ + KL   + ++    R+ +     +  E+   L+ +D+ + V +  +  +  K   +
Sbjct: 3   SALTDKLSRLVKEMRGQARITESNVQDMLREVRMALLEADVALPVVRDFIARVKEKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q ++  V++ +   +       N + +  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVISSLQPGQVLVSIVNKELAATMGEGVADINLN-AQPPAVILMAGLQGAGKTTTTAKLA 121

Query: 133 KKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +    KV+  +GD +R AAI+QLK    +  A++  S        +A  A   A+ 
Sbjct: 122 KHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAGAEWFPSTPDQKPHDIAVAAIDYAKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  + +LMA I  +   LK      P   L V+DA  GQ+A+   + 
Sbjct: 182 HFFDVLLVDTAGRLAIDELLMAEIKDLHATLK------PVETLFVVDAMQGQDAVNTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG +RGG  + +      P+ F GV E I+ LE F A   +  + 
Sbjct: 236 FKEALPLTGIVLTKLDGDSRGGAALSVRQITGAPIKFAGVSEKIDGLEVFDADRHAQRVL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|254700468|ref|ZP_05162296.1| signal recognition particle protein [Brucella suis bv. 5 str. 513]
 gi|261750971|ref|ZP_05994680.1| signal recognition particle protein [Brucella suis bv. 5 str. 513]
 gi|261740724|gb|EEY28650.1| signal recognition particle protein [Brucella suis bv. 5 str. 513]
          Length = 523

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   LI +D+ + V +   + +  K   
Sbjct: 2   FETLQERLGSILNGLTGRGALSESDVTAALREVRRALIEADVSLEVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       + + +  P VI++VG+ G GKTT  GK+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELVEMLGTEGVAIDLN-APAPVVIMMVGLQGSGKTTTTGKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      +V++A+ DT R AA +QL+    +T  D +    G     +A  A + A+
Sbjct: 121 AKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDTLPIIAGQSPVEIARRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------PHKILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+  +  GE ++ LE F  K  +  I
Sbjct: 235 NFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLIATGEKMDALEEFYPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|220928147|ref|YP_002505056.1| signal recognition particle-docking protein FtsY [Clostridium
           cellulolyticum H10]
 gi|219998475|gb|ACL75076.1| signal recognition particle-docking protein FtsY [Clostridium
           cellulolyticum H10]
          Length = 302

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 123/303 (40%), Positives = 186/303 (61%), Gaps = 4/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL +G   T   + E I  ++ S  ++D+ + EELE++LI SDIG+    +++E+
Sbjct: 1   MGFFDKLKEGLQKTRKSITEKIDQVLVSFGKVDEELFEELEEILITSDIGIDTTMRVIED 60

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   + +   + +   + E + ++L             +P VI+V+GVNGVGKTT I
Sbjct: 61  LKEKVKERKIIDPKDVKGLLKESLKEILEKGGSEMKIGT--KPSVIIVIGVNGVGKTTSI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++    + G KV+LAAGDTFR+AAIDQL++WA R   D +  + GSD AA+ ++A + 
Sbjct: 119 GKIANLYKNQGKKVLLAAGDTFRAAAIDQLEVWAQRVGTDIIMHKEGSDPAAVIFDAVQA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+++  D+LI DTAGRLH    LM  + K+ RVL R  P A    L VLDATTGQNA+ Q
Sbjct: 179 AKSRNADLLICDTAGRLHTKKNLMEELKKISRVLDRELPGADRETLLVLDATTGQNAISQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F   +  TG+++TK+DGTA+GG +I I     IPV  +GVGE ++DL+ F A++F  
Sbjct: 239 AKTFSETSDITGIVLTKLDGTAKGGIVIAIKSELDIPVKLIGVGEQLDDLQKFDAEEFVE 298

Query: 309 VIT 311
            + 
Sbjct: 299 ALF 301


>gi|320100244|ref|YP_004175836.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfurococcus mucosus DSM 2162]
 gi|319752596|gb|ADV64354.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Desulfurococcus mucosus DSM 2162]
          Length = 450

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 91/298 (30%), Positives = 144/298 (48%), Gaps = 15/298 (5%)

Query: 26  LKLKEGITDIISSRRLD---DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV- 81
             ++  +   +     +   D    EL+  L+R+D+ + +A ++   +  +    +    
Sbjct: 4   DNIRSALARFLKGGDYEKAVDEFIRELQKELVRADVNLKLAMELTSRIKERALKAEPPPG 63

Query: 82  ----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
               +  +  V E + ++L    KP +   + +P VI++VG+ G GKTT   KL+     
Sbjct: 64  ISRKEWFITVVYEELTRLLGGERKP-SVKPAKKPWVIMLVGLQGSGKTTTTAKLAYFYKL 122

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            GL+V L A DTFR AA  QLK   ++           SDA A+A +  +  + +K+DV+
Sbjct: 123 EGLRVGLVAADTFRPAAYMQLKQLGEQVGVPVYGEPGNSDAVAIAVKGVEFFRERKMDVI 182

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           IIDTAGR H    L+  + KM   +K      P  V+ V+DA  GQ A      FH    
Sbjct: 183 IIDTAGRHHREEDLLEEMKKMSEHVK------PDEVMLVIDAAIGQQAFNIARRFHEATP 236

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              +I+TK+DGTA+GGG +  V      + F+G GE I++LE F    F + I G  D
Sbjct: 237 IGSIIVTKLDGTAKGGGALSAVAATGASIKFIGTGEKIDELEVFNPPRFVSRILGLGD 294


>gi|148284178|ref|YP_001248268.1| cell division ABC transporter, periplasmic substrate-binding
           protein [Orientia tsutsugamushi str. Boryong]
 gi|146739617|emb|CAM79402.1| cell division ABC transporter, periplasmic substrate-binding
           protein [Orientia tsutsugamushi str. Boryong]
          Length = 312

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 112/300 (37%), Positives = 176/300 (58%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ KLT   + T+ KL   IT + S + +     E+LE++L+ +D GV     I+E   
Sbjct: 3   SWLNKLTAAVSKTTNKLTVQITKLFSEKTITKESIEQLEEVLLSADFGVTATNNIIENFK 62

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           T ++ K++ +  +  ++++ I K   P   P         +V+++ G+NG GKTT IGKL
Sbjct: 63  TIKFNKNIQLDDIKSELAKSIIKFAFPNGNPELHIKPDVLNVMIICGINGNGKTTTIGKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S   +  G K+ +AA DTFR+AA +QL++WA+R+ +       G+D A++AY+A   A  
Sbjct: 123 SHYYNLQGQKIAIAACDTFRAAATEQLEVWANRSGSYLFKGNPGADPASVAYQAVSWAID 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            K+++L IDTAGRLHN+  LM  + K+ +V+ +    +    L  LDAT GQNA  QVE 
Sbjct: 183 NKINILFIDTAGRLHNHKNLMDQLKKIKKVINQYHSSSVCYTLLTLDATNGQNAFTQVEQ 242

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +    G+I+TK+D T++ G  + I    KIP+YF+G+GE I+D++ F A DF   I 
Sbjct: 243 FQDIVLLDGVIITKLDSTSKAGVAVGIAEKFKIPIYFIGIGEQIDDIKEFNASDFVNAIL 302


>gi|314966101|gb|EFT10200.1| signal recognition particle protein [Propionibacterium acnes
           HL082PA2]
 gi|315094952|gb|EFT66928.1| signal recognition particle protein [Propionibacterium acnes
           HL060PA1]
          Length = 528

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L      +    RL D   +    ++   L+ +D+ ++V ++ V  +  + + 
Sbjct: 2   FDTLQDRLASTFKGLRGKGRLTDADIDATTRQIRIALLEADVNLSVVKEFVAAIKERCHG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++S      Q+++  V+E + ++L   ++   +  +    ++++ G+ G GKTT+ GKL
Sbjct: 62  EELSKALNPTQQIVKIVNEELVEILGGQTRTVRFAKTPS-TIVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++   + G   +LAA D  R  A+ QL++  +R        E G+   D   +A +A  +
Sbjct: 121 AQWFKEEGHSPLLAACDLQRPNAVTQLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+IIDTAGRL  ++ +MA    +           P   L V+DA  GQ+A+  
Sbjct: 181 AEHKLYDVVIIDTAGRLGVDAEMMAQAADIKTATD------PDETLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+++TK+DG ARGG  + I      P+ F   GEG+ D + F     ++
Sbjct: 235 AVAFQEGVGFDGVVLTKLDGDARGGAALSIARVVGKPIMFASSGEGLKDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|91215952|ref|ZP_01252921.1| signal recognition particle protein [Psychroflexus torquis ATCC
           700755]
 gi|91185929|gb|EAS72303.1| signal recognition particle protein [Psychroflexus torquis ATCC
           700755]
          Length = 442

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL +    +    ++ +       +E+   L+ +D+   +A+     +  K   
Sbjct: 2   FDSLSDKLDKAFHVLKGHGQITEVNVAETLKEVRRALVDADVNFKIAKDFTNLVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  V + + K++   ++    D S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QDVLKTLKPNQLMVKIVKDELTKLMGGDAEE--VDLSGNPSVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      + +L A D +R AAIDQL +  D+   +   ++   +   +A  A   A+
Sbjct: 120 ANYLKSKKSKQPLLVACDVYRPAAIDQLHVVGDQIGVEVFSNKEEKNPVLIAEAAIAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRL  + ++M  I  + + +K      P   L V+DA TGQ+A+   +
Sbjct: 180 QNGHNVVILDTAGRLAVDQVMMNEISDIYKAVK------PQETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V    G+I+TK+DG  RGG  I I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 TFNDVLDFDGVILTKLDGDTRGGAAISIKSVVNKPIKFIGTGEKMDAIDVFYPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|229829001|ref|ZP_04455070.1| hypothetical protein GCWU000342_01086 [Shuttleworthia satelles DSM
           14600]
 gi|229792164|gb|EEP28278.1| hypothetical protein GCWU000342_01086 [Shuttleworthia satelles DSM
           14600]
          Length = 474

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 113/304 (37%), Positives = 170/304 (55%), Gaps = 5/304 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L  G + T     + +  + S   R+D+   EELE++LI  D+GV  + +++E 
Sbjct: 1   MGFFSRLKAGLSKTRDGFVKNMDYVFSGFSRIDEDFYEELEEVLISGDLGVQTSMRLIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   + +        +  LI  +   +    N +DF     V+++VGVNGVGKTT +
Sbjct: 61  LRQEVKDQHIKEAGDCRQL--LIDDIRRQMDVGENAYDFEQETSVLMMVGVNGVGKTTTV 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAI-DQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+ K      K +L A      AA  +QLK WADR   D +  + GSD AA+ ++A +
Sbjct: 119 GKLAAKFKQEKKKRVLIAAADTFRAAANEQLKEWADRAGVDMIGGQEGSDPAAVVFDAVQ 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  D+L++DTAGRLHN + LM  + K+ RV+ R         L VLDAT+GQNAL 
Sbjct: 179 SAKARNCDILLVDTAGRLHNKTNLMHELEKINRVIDREYEGVHRETLAVLDATSGQNALV 238

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F AVA  TG+++TKMDG+A+GG  + I     IPV ++GVGE + DLE F A  + 
Sbjct: 239 QAREFAAVANVTGIVLTKMDGSAKGGIAVAIQSELGIPVKYIGVGETVEDLERFDADQYV 298

Query: 308 AVIT 311
             + 
Sbjct: 299 NALF 302


>gi|320161066|ref|YP_004174290.1| cell division protein FtsY [Anaerolinea thermophila UNI-1]
 gi|319994919|dbj|BAJ63690.1| cell division protein FtsY [Anaerolinea thermophila UNI-1]
          Length = 306

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 108/299 (36%), Positives = 172/299 (57%), Gaps = 3/299 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             K   G   T       I  +  + +++    EELE +L+++D+G+   ++I++ L   
Sbjct: 5   FSKWKNGLEKTRKAAFGRIATLFGATQINTETWEELEAILVQADLGIETTEEIIQALKQH 64

Query: 74  RYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              + ++    L   + E++ + L P   P       +P +IL+VGVNG GKTT   KL 
Sbjct: 65  VVQEGLTRTEELQHALREVLIQRLDP--TPVVDFSYQKPAIILLVGVNGSGKTTTAAKLG 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            + S AG  V+LAA DTFR+AA+DQL++W +R     +  +  +D AA+A++A + A +K
Sbjct: 123 WQFSRAGKTVLLAAADTFRAAAVDQLQVWGERLGLPVIAGQPNADPAAVAFDAIQSAISK 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K+D++++DTAGRLH    LM  + K+ RV+ +  P APH+V  VLDATTGQNAL+Q + F
Sbjct: 183 KIDIVLVDTAGRLHTRYNLMEELKKIHRVVGKALPGAPHAVWLVLDATTGQNALQQAKAF 242

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                 TG+I++K+D +ARGG    I  +  +P+ + G+GE   DL+ F  + F   I 
Sbjct: 243 KEAVQVTGIILSKLDSSARGGMAFAIQESLGLPILYAGLGEKPEDLQVFDREAFVNGIL 301


>gi|225571978|ref|ZP_03780842.1| hypothetical protein RUMHYD_00272 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040511|gb|EEG50757.1| hypothetical protein RUMHYD_00272 [Blautia hydrogenotrophica DSM
           10507]
          Length = 313

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 181/312 (58%), Gaps = 4/312 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  E   + ++L  G + T   +  GI  I S    +D+   EE+E++LI  D+G+    
Sbjct: 1   MGEEKKGFFKRLVSGLSKTRANIVSGIDSIFSGFSSIDEDFYEEIEEILIMGDLGINATT 60

Query: 65  KIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            I+E L  +   K +         + + I + +   +    ++F +R  VILV+GVNGVG
Sbjct: 61  SIIENLKKQVEEKRIKDPAECKKLLIDSIKQEMTVGNTE--YEFENRKSVILVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ K+ D G KV+LAA DTFR+AA +QL  WA+R   + +  + G+D A++ +
Sbjct: 119 KTTSVGKLAGKLKDQGKKVILAAADTFRAAAGEQLIQWANRAGVELIGGQPGADPASVVF 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+  D+L+ DTAGRLHN   LM  + K+ R+L++  P A    L VLD TTGQ
Sbjct: 179 DAVAAAKARNADILLCDTAGRLHNKKNLMEELRKIYRILEKEYPEAYLETLVVLDGTTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F  VA  TG+I+TK+DGTA+GG  + I     IPV ++GVGE I DLE F A
Sbjct: 239 NALAQARQFAEVAKVTGIILTKLDGTAKGGIAVAIHSELDIPVKYIGVGESIEDLEKFNA 298

Query: 304 KDFSAVITGCLD 315
           + F   +    D
Sbjct: 299 ESFVNALFDVKD 310


>gi|108804224|ref|YP_644161.1| signal recognition particle-docking protein FtsY [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765467|gb|ABG04349.1| signal recognition particle-docking protein FtsY [Rubrobacter
           xylanophilus DSM 9941]
          Length = 348

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 128/273 (46%), Positives = 175/273 (64%), Gaps = 4/273 (1%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           D+   E +E++LI SD+GV    K+V+ L  +   K+++    L  +  L+      L  
Sbjct: 80  DEEFWERVEEILIASDVGVPTTAKLVQRLEQEALEKNITGAGELRRL--LVEHAARMLEG 137

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           P   D SHRP VIL+VGVNG GKTT IGKL++ +      VM AAGDTFR+AAI+QL+ W
Sbjct: 138 PVEIDLSHRPTVILMVGVNGTGKTTTIGKLARHLPAR--SVMFAAGDTFRAAAIEQLQKW 195

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            +R  A  V  E G+DAAA+A++A + A+ + V+VLI+DTAGRLH    LMA + K+ RV
Sbjct: 196 GERVGAPVVARERGADAAAVAHDAVEAAKREGVEVLIVDTAGRLHTKVNLMAELEKVRRV 255

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           + R  P APH VL  +DATTGQN LRQ  MF  VAG TG+++TK+DGTA+GG  + I   
Sbjct: 256 IGRQLPGAPHEVLLTVDATTGQNGLRQARMFKEVAGVTGVVLTKLDGTAKGGIALAIADE 315

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
             +P+  + VGEG+ DL PF A+ F+  + G L
Sbjct: 316 VGLPIKLVSVGEGVEDLHPFDARQFAEALFGEL 348


>gi|163847286|ref|YP_001635330.1| signal recognition particle-docking protein FtsY [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525130|ref|YP_002569601.1| signal recognition particle-docking protein FtsY [Chloroflexus sp.
           Y-400-fl]
 gi|163668575|gb|ABY34941.1| signal recognition particle-docking protein FtsY [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449009|gb|ACM53275.1| signal recognition particle-docking protein FtsY [Chloroflexus sp.
           Y-400-fl]
          Length = 325

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 112/296 (37%), Positives = 167/296 (56%), Gaps = 7/296 (2%)

Query: 20  GFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
               +   +   I  + +    + D + +ELE+ LI++D+G+   Q +V   + +     
Sbjct: 29  SLEKSRKGIFGRIAQLFAGDDPITDELWDELEEALIQADVGLETTQYLVNRTIDRVNRHG 88

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           V   R   +  E++   ++     +      + RP+VILVVGVNG GKTT+I KL+ +  
Sbjct: 89  VKKAR---EAREMLKAEMVRTFAEYAGQQRPNARPYVILVVGVNGAGKTTLIAKLAHRYK 145

Query: 137 DA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           +  G KV+LAAGDTFR+AA +QL+ WA+R     V    G+DAAA+ Y+A   A  + VD
Sbjct: 146 NRFGKKVLLAAGDTFRAAATEQLETWAERAGVPCVSLGQGADAAAVVYKAIDAALEQDVD 205

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           VLIIDTAGRLH    LM  + K+  ++ R  P APH  + V+DATTGQN + Q + F   
Sbjct: 206 VLIIDTAGRLHAKYNLMQELEKIRNIIGRKLPGAPHETILVIDATTGQNGVLQAKAFLKA 265

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           AG T + +TKMDGTA+GG    I    + P+ ++G GE ++DL  F A+ F   + 
Sbjct: 266 AGVTDVAITKMDGTAKGGIAFAIAQDIERPIRYIGTGEKMDDLALFDAQTFVDALF 321


>gi|313680228|ref|YP_004057967.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Oceanithermus profundus DSM 14977]
 gi|313152943|gb|ADR36794.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Oceanithermus profundus DSM 14977]
          Length = 434

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 143/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L++ +  +    R+ +   +    E+   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSRRLQQTLDGLRGRGRIGEADLKKVMREIRMSLLEADVNFEVAKAFTKRVQEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       +++   V + + ++L   S+P   +  H  +V  +VG+ G GKTT  GKL
Sbjct: 62  QKVYESLTPAEQIYTIVYDELKELLG--SEPKQPELKHEGNVWFLVGLQGTGKTTAAGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G + +L A DT R AA DQL+I A++     +  + G   A  A    +    
Sbjct: 120 ARLYKSKGRRPLLVAADTQRPAARDQLRILAEQVGVPVLEVQNGEKPAETARRLREHLAK 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRL  +  LM  + ++       D   P   L V+DA  GQ AL     
Sbjct: 180 DYRDLVIVDTAGRLQIDEALMDELAQLK------DELEPTETLLVVDAMMGQEALGVSRT 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G +GLI+TK+DG ARGG  +        P+YF G  E ++ LEPF     +  I 
Sbjct: 234 FDERIGVSGLILTKLDGDARGGAALSARYVTGKPIYFGGTSEKLDGLEPFYPDRLAQRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|172038841|ref|YP_001805342.1| cell division protein [Cyanothece sp. ATCC 51142]
 gi|171700295|gb|ACB53276.1| cell division protein [Cyanothece sp. ATCC 51142]
          Length = 464

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 107/315 (33%), Positives = 183/315 (58%), Gaps = 5/315 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +   ++ E ++W+++L +G   +   L   +  I+    L++    E+E LL+++D G+ 
Sbjct: 148 APDDISEEEINWLKRLRQGLGKSRRGLVNQLKSIVGQGPLNEDAVMEIEALLLQADTGIE 207

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRP---HVILVV 117
               I+  L  K   + +  ++ L  +  ++  +L  PL K  N  F+      ++ L+ 
Sbjct: 208 ATDYIISTLQNKLLEEALPPEQALDYLKSILRDILDRPLQKVVNPGFAPEKGVLNIWLLT 267

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT IGKL+     +G   ++AA DTFR+AA++Q+K+W +RT+   + +    +
Sbjct: 268 GVNGAGKTTTIGKLAHLAQKSGYNCIIAAADTFRAAAVEQVKVWGERTNTPVIANPGKNT 327

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++    AQA++ D+L++DTAGRL N   LMA + K+ R++ +    A    L V
Sbjct: 328 DPAAVVFDGISAAQARQADLLLVDTAGRLQNKKNLMAELAKIRRIIDKKADKAQVESLLV 387

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN LRQ ++F   A  +G+++TK+DGTA+GG  + +    ++P+ F+GVGEGI 
Sbjct: 388 LDATLGQNGLRQAQVFSEAANLSGVVLTKLDGTAKGGVALAVAQQLELPIRFIGVGEGIE 447

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF + +F   + 
Sbjct: 448 DLRPFSSYEFVEALL 462


>gi|212716744|ref|ZP_03324872.1| hypothetical protein BIFCAT_01681 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660448|gb|EEB21023.1| hypothetical protein BIFCAT_01681 [Bifidobacterium catenulatum DSM
           16992]
          Length = 548

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 146/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 62  LGTEVSQALNPAQQVVKIVNEELTAVLGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE--------------- 173
           GKL   + D+G   +L A D  R  A+ QL++  +R        E               
Sbjct: 121 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVASPG 180

Query: 174 -IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               D   +A +A   A+ K  D +IIDTAGRL  +  LM     +       D   P+ 
Sbjct: 181 LTTGDPVKVARDAVALAKQKLYDTVIIDTAGRLGVDEELMKQARDI------RDAVQPNE 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 235 ILFVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTG 294

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 295 EGLKDFEVFHPDRMASRILDMGD 317


>gi|164688565|ref|ZP_02212593.1| hypothetical protein CLOBAR_02210 [Clostridium bartlettii DSM
           16795]
 gi|164602978|gb|EDQ96443.1| hypothetical protein CLOBAR_02210 [Clostridium bartlettii DSM
           16795]
          Length = 452

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 123/305 (40%), Positives = 192/305 (62%), Gaps = 2/305 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            + +S   +L +G       + + I +++ +  ++D+ + E+LE++LI +D+GV     I
Sbjct: 148 PKKVSLFDRLKQGLTKAKQGITDRIDEVLKAYTKVDEELLEDLEEVLITADVGVNTTMDI 207

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E+L      K ++  + + +  +LI + ++        D SH P +IL+VGVNGVGKTT
Sbjct: 208 IEKLEDVIRTKKITDPQDVREELKLIIEDILSKDD-TKLDVSHSPTIILMVGVNGVGKTT 266

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ +    G KV+LAAGDTFR+AAIDQL++WA+R + D +  + G+D  A+ ++A 
Sbjct: 267 TIGKLAHRYKSEGKKVLLAAGDTFRAAAIDQLEVWANRCNVDIIKHQEGADPGAVIFDAI 326

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K ++A+ VDVLI DTAGRLHN S LM  +GK+ +++ R  P A   VL V+DATTGQNA+
Sbjct: 327 KASKARGVDVLICDTAGRLHNKSNLMNELGKVFKIVDREYPEAKKEVLLVVDATTGQNAV 386

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F  V   TGL +TK+DGTA+GG ++ +     +PV  +GVGE + DL+ F +K F
Sbjct: 387 SQAKSFKEVCDITGLALTKLDGTAKGGVILAVKSEVDVPVKLIGVGEKMEDLQDFDSKSF 446

Query: 307 SAVIT 311
              + 
Sbjct: 447 VDALF 451


>gi|193216162|ref|YP_001997361.1| signal recognition particle protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193089639|gb|ACF14914.1| signal recognition particle protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 449

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S KL+  +  +    ++++        +++  L+ +D+   V +  VE++  +   
Sbjct: 2   FESLSDKLEHALKKLSGQAKINEINIGMAMRDIKRALLDADVNYKVTKNFVEQVRKQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + K +    K  N   S  P VI+V G+ G GKTT   KL
Sbjct: 62  EEVIKSVSPAQMIVKIVHDELVKAMGGEQKDINLKTSRMPAVIMVAGLQGSGKTTFTAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +L A D +R AAI+QLK    +        E      A A +  + A+ 
Sbjct: 122 ANLLKKKGRAPLLIAADVYRPAAIEQLKTLGAQIGVPVFSIEEKDALKA-AKQGIEFAKQ 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +V I+DTAGRL  +  +MA   ++ R L       P  +L V+D+  GQ A+   ++
Sbjct: 181 NSKNVAIVDTAGRLQIDEEMMAEAERLKRELS------PEEILFVVDSMIGQEAVNTAKV 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TKMDG  RGG  + I      P+ FL  GE ++DL+ F  +  +  I 
Sbjct: 235 FNDRLDFDGVVLTKMDGDTRGGAALSIKTVVDKPIKFLSQGEKVDDLDIFYPERMAQRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|261416795|ref|YP_003250478.1| signal recognition particle protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373251|gb|ACX75996.1| signal recognition particle protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302328200|gb|ADL27401.1| signal recognition particle protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 454

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+  +  L+  + ++    +L +        E+    + +D+   V +  V+ +  K   
Sbjct: 2   FSQLTDSLENTLKNLRGQGKLTEENVAESLREVRRAFLAADVNFNVTRDFVKSVKEKSMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+++  + + +  ++   +K  N   +  P  I++VG+ G GKTT  GK+
Sbjct: 62  AEVLNSVTPGQQIVKIIHDELVAVMGGETKEINLS-APSPVGIMMVGLQGSGKTTFAGKI 120

Query: 132 SKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  M      K +L A D +R AAI QL++            E   +   +    ++ A+
Sbjct: 121 ALWMRSKKKRKPLLVAADVYRPAAIKQLQVLGKSIGVPVY-DEGQGNPVEIIKHGYQYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I DTAGRL  +  LM  +       K  D   P  +L V DA  GQ A+   E
Sbjct: 180 DNGFDLVIYDTAGRLQIDEELMQELE------KARDAVHPDEILFVADAMIGQEAVNVAE 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+ ++KMDG  RGG  + I     +P+ F+GVGE +N+++ F     ++ I
Sbjct: 234 TFWNRLNFTGVCLSKMDGDTRGGAALSIKKMTGVPICFIGVGEKLNEIDLFHPDRMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|163839822|ref|YP_001624227.1| signal recognition particle protein [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953298|gb|ABY22813.1| signal recognition particle protein [Renibacterium salmoninarum
           ATCC 33209]
          Length = 522

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/313 (26%), Positives = 142/313 (45%), Gaps = 25/313 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L     ++    RL     D    E+   L+  D+ V V ++   ++  +   
Sbjct: 2   FNSLADRLAATFKNLRGKGRLSEADVDATVREIRRALLDVDVAVPVVREFTGKVRERAMG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q+++  V+E +  +L   ++       + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVNAALNPAQQIVKIVNEELVAILGGQTRRIRL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI---------GSDAAALA 182
           SK +   G   +L A D  R  A+ QL++  +R                     D  A+A
Sbjct: 121 SKWLKGQGHSPLLVAADLQRPNAVKQLQVNGERAGVRVFAPHPGVSSEFESATGDPVAVA 180

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                +A++K  DV+I+DTAGRL  ++ LM     +   +       P  VL V+DA  G
Sbjct: 181 QAGLAEARSKLHDVVIVDTAGRLGVDAELMQQAADIRAAIS------PDEVLFVIDAMIG 234

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+A+   + F      TG++++K+DG ARGG  + +      PV F   GE ++D E F 
Sbjct: 235 QDAVATAQAFDEGVNFTGIVLSKLDGDARGGAALSVATVTGKPVMFASTGESLDDFEVFH 294

Query: 303 AKDFSAVITGCLD 315
               ++ I    D
Sbjct: 295 PDRMASRILDMGD 307


>gi|169342687|ref|ZP_02863728.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens C str. JGS1495]
 gi|169299193|gb|EDS81263.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens C str. JGS1495]
          Length = 304

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 121/299 (40%), Positives = 181/299 (60%), Gaps = 1/299 (0%)

Query: 14  IRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             KL  G   T   L + I + ++ +  +DD + EELE+ LI SDIG+    +I++ L  
Sbjct: 6   FDKLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTIEIIDRLKA 65

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K   + ++   ++    + +   +M        +  +   V+L++GVNGVGKTT IGK++
Sbjct: 66  KIRKEKINDVEMVKPALKEVIAEMMLEGDSEEEEEDNEKKVMLIIGVNGVGKTTSIGKIA 125

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +  + G KV+LAA DTFR+AAIDQL IW+ R + D V  + GSD AA+ ++A + A+A+
Sbjct: 126 ARNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKAR 185

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            VD+LI DTAGRLHN   LM  + K+ R++ R         L VLD TTGQNA+ Q + F
Sbjct: 186 DVDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQF 245

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                  G+I+TK+DGTA+GG +I I  T  IPV ++GVGEG++DL+ F AK+F+  + 
Sbjct: 246 MEACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVDDLQKFNAKEFAEALL 304


>gi|314923933|gb|EFS87764.1| signal recognition particle protein [Propionibacterium acnes
           HL001PA1]
          Length = 528

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L      +    RL D   +    ++   L+ +D+ ++V ++ V  +  + + 
Sbjct: 2   FDTLQDRLASTFKGLRGKGRLTDADIDATTRQIRIALLEADVNLSVVKEFVAAIKERCHG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++S      Q+++  V+E + ++L   ++   +  +    ++++ G+ G GKTT+ GKL
Sbjct: 62  EELSKALNPTQQIVKIVNEELVEILGGQTRTVRFAKTPS-TIVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++   + G   +LAA D  R  A+ QL++  +R        E G+   D   +A +A  +
Sbjct: 121 AQWFKEEGHSPLLAACDLQRPNAVTQLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+IIDTAGRL  ++ +MA    +           P   L V+DA  GQ+A+  
Sbjct: 181 AEHKLYDVVIIDTAGRLGVDAEMMAQAADIKTATD------PDETLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+++TK+DG ARGG  + I      P+ F   GEG+ D + F     ++
Sbjct: 235 AVAFQEGVGFDGVVLTKLDGDARGGAALSIARVVGKPIMFASSGEGLKDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|291299634|ref|YP_003510912.1| signal recognition particle-docking protein FtsY [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568854|gb|ADD41819.1| signal recognition particle-docking protein FtsY [Stackebrandtia
           nassauensis DSM 44728]
          Length = 413

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 114/314 (36%), Positives = 175/314 (55%), Gaps = 5/314 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           + +  V   +   + +L    + ++  L  G+  ++S  RLDD   EE+E+ L+ +D+G+
Sbjct: 64  VEDLDVPEPTAGRLVRLRARLSKSNNSLGRGLLTLLSRDRLDDDAWEEIEETLLMADVGL 123

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMP-LSKPFN-WDFSHRPHVILVV 117
               +IVE L  +           L   +SE +   L P   +  N      RP V+LVV
Sbjct: 124 ESTNRIVERLRERVKVLGTRTAEELRGLLSEELTAALDPSFDRALNATGDGERPAVLLVV 183

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNG GKTT  GK+++ +   G  V+L A DTFR+AA DQL+ W  R  +  V    G D
Sbjct: 184 GVNGAGKTTTCGKIARVLIADGHSVVLGAADTFRAAAADQLETWGKRVGSTVVRGPEGGD 243

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A++A K    +  D +++DTAGRL N + LM  +GK+ RV+++  P A    L ++
Sbjct: 244 PASVAFDAVKTGTEQGADSVLVDTAGRLQNKTGLMDELGKVKRVIEKQGPVA--ETLLII 301

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG +I +  T  +PV  +G+GEG +D
Sbjct: 302 DATTGQNGLEQARVFTEVCQVTGVVLTKLDGTAKGGIVIAVQQTLGVPVKLIGLGEGPDD 361

Query: 298 LEPFVAKDFSAVIT 311
           L PF  + F   + 
Sbjct: 362 LAPFDVQQFVDALL 375


>gi|327328022|gb|EGE69791.1| signal recognition particle protein [Propionibacterium acnes
           HL103PA1]
          Length = 528

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L      +    RL D   +    ++   L+ +D+ ++V ++ V  +  + + 
Sbjct: 2   FDTLQDRLASTFKGLRGKGRLTDADIDATTRQIRIALLEADVNLSVVKEFVAAIKERCHG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++S      Q+++  V+E + ++L   ++   +  +    ++++ G+ G GKTT+ GKL
Sbjct: 62  EELSKALNPTQQIVKIVNEELVEILGGQTRTVRFAKTSS-TIVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++   + G   +LAA D  R  A+ QL++  +R        E G+   D   +A +A  +
Sbjct: 121 AQWFKEEGHSPLLAACDLQRPNAVTQLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+IIDTAGRL  ++ +MA    +           P   L V+DA  GQ+A+  
Sbjct: 181 AEHKLYDVVIIDTAGRLGVDAEMMAQAADIKTATD------PDETLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+++TK+DG ARGG  + I      P+ F   GEG+ D + F     ++
Sbjct: 235 AVAFQEGVGFDGVVLTKLDGDARGGAALSIARVVGKPIMFASSGEGLKDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|302761974|ref|XP_002964409.1| hypothetical protein SELMODRAFT_81276 [Selaginella moellendorffii]
 gi|300168138|gb|EFJ34742.1| hypothetical protein SELMODRAFT_81276 [Selaginella moellendorffii]
          Length = 494

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/307 (30%), Positives = 151/307 (49%), Gaps = 15/307 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             +L+        KL+    + ++S  + +   +++   L+ +D+ + V +K+V  +  K
Sbjct: 8   FDQLSTSLEKVWTKLQG--EETLTSENMKEP-LQDIRRALLEADVSLPVVRKLVGSIAEK 64

Query: 74  RYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                V       Q+++  V + +  ++   +    +  +  P VIL+ G+ GVGKTT  
Sbjct: 65  AVGTGVIRGVRPDQQLVKVVYDELISLMGGQAAHIEFSGT-PPTVILMAGLQGVGKTTAC 123

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  M   G   ML A D +R AAI+QL     +       +        +A    K+
Sbjct: 124 GKLALYMKKKGKSCMLVATDIYRPAAIEQLITLGKQVEVPVFEAGTELSPVEIAKRGLKE 183

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DVLI+DTAGRL  ++ +M  + +M +VL       P+ VL V+DA TGQ A   
Sbjct: 184 AKEKGTDVLIVDTAGRLQVDATMMDELKQMKKVLN------PNEVLLVVDAMTGQEAAAL 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V  F+   G TG IMTK+DG +RGG  + +      P+ F+G GEG+N LE F     ++
Sbjct: 238 VSAFNLEVGITGAIMTKVDGDSRGGAALSVREVSGKPIKFVGEGEGMNALELFYPDRMAS 297

Query: 309 VITGCLD 315
            I G  D
Sbjct: 298 RILGMGD 304


>gi|328951033|ref|YP_004368368.1| signal recognition particle protein [Marinithermus hydrothermalis
           DSM 14884]
 gi|328451357|gb|AEB12258.1| signal recognition particle protein [Marinithermus hydrothermalis
           DSM 14884]
          Length = 432

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 136/304 (44%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+E +  +    R+ +   +    E+   L+ +D+   VA+  V  +  K   
Sbjct: 2   FENLSRRLRESLDKLRGRGRITEADLKQVMREIRMSLLEADVNFEVAKAFVARVQEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       ++V   V   +  +L    K    +  H  ++  +VG+ G GKTT  GKL
Sbjct: 62  QKVLESLTPAEQVYTIVYNELTDLLGG--KAVQPELRHEGNLWFLVGLQGSGKTTTAGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G + +L A DT R AA +QL+I  +R     +           A       + 
Sbjct: 120 ARYYKSKGRRPLLVAADTQRPAAREQLRILGERVGVPVLEVADNEPPEVTAQRLKDHLKT 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRL  +  LM  + +   VL       P   L V+DA TGQ AL   + 
Sbjct: 180 DYRDLVIVDTAGRLQIDEPLMEALARQKAVLN------PTETLLVVDAMTGQEALGVSKT 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG ARGG  +        P+YF G  E +  LEPF     +  I 
Sbjct: 234 FDERIGVTGLVLTKLDGDARGGAALSARFVTGKPIYFAGTSEKLEGLEPFYPDRLAQRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|85374323|ref|YP_458385.1| signal recognition particle GTPase [Erythrobacter litoralis
           HTCC2594]
 gi|84787406|gb|ABC63588.1| signal recognition particle GTPase [Erythrobacter litoralis
           HTCC2594]
          Length = 500

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 93/310 (30%), Positives = 154/310 (49%), Gaps = 22/310 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +  VR+ + +    L+ +D+ + VA+  ++++  K   
Sbjct: 2   FDALSDRLGSTFDRLRGRGALREQDVRDAMREVRIALLEADVALPVAKSFIDKVTEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSK-----PFNWDFSHRPHVILVVGVNGVGKTT 126
           +DV       Q+V+  V++ +  ML          P   + +  P VI++VG+ G GKTT
Sbjct: 62  EDVLKSVTPGQQVIKIVNDELVAMLGGDDGEQGHVPLTLE-AKPPVVIMMVGLQGSGKTT 120

Query: 127 VIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
              KLSK + +  G K M+A+ D  R AA +QL +  ++     +    G     +A  A
Sbjct: 121 TTAKLSKYIREKHGKKPMMASLDVNRPAAQEQLAVLGEQVDVATLPIVQGQQPVDIARRA 180

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+ + VDVL++DTAGRLH +  LMA +  +  V       AP  VL V+D+ TGQ+A
Sbjct: 181 LEAARLQNVDVLLLDTAGRLHVDEALMAEMKAVAGV------SAPTEVLLVVDSLTGQDA 234

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +   + F      TG+++T+MDG ARGG  + +      P+ F G GE ++ +E F    
Sbjct: 235 VNVAQNFSDEVPLTGVVLTRMDGDARGGAALSMRAVTGKPIKFAGTGEKLDAIEAFHPAR 294

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 295 VADRILGMGD 304


>gi|313124068|ref|YP_004034327.1| signal recognition particle-docking protein ftsy [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280631|gb|ADQ61350.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|325685923|gb|EGD27988.1| cell division protein FtsY [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 423

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 103/295 (34%), Positives = 168/295 (56%), Gaps = 6/295 (2%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   ++      +   ++  R +D+   ++LE+LLI SD+G   ++++ ++L  +   +
Sbjct: 121 KGLEKSNKGFGARLNAFLAKFRTVDEDFFDDLEELLIESDVGYETSEELTDQLREEAKLQ 180

Query: 78  DVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
               +  L  V      E+  +     ++   +D + +P+V L VGVNG GKTT +GKL+
Sbjct: 181 KAKSRDDLKRVIVQKLVEVYDENANSENEKLAYDPNAKPNVYLFVGVNGAGKTTTVGKLA 240

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K+  D G KV+L A DTFR+ A++QL  W  RT    V     +D AA+ Y+  ++A A+
Sbjct: 241 KRFHDQGKKVLLVAADTFRAGAVEQLVEWGKRTGVPVVTGPDKADPAAVVYDGLERAIAE 300

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           + D L++DTAGRL N   LM  + K+ R +K+  P  P   L VLD +TGQNAL Q + F
Sbjct: 301 EADYLLVDTAGRLQNKVNLMNELEKIQRTIKKRLPDQPAETLLVLDGSTGQNALLQAKDF 360

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 +GL++TK+DG+++GG ++ I    K+PV  +G+GE   DL  F A +++
Sbjct: 361 DKTTKLSGLVLTKLDGSSKGGVVLSIRHEMKLPVKLVGLGEKAEDLADFDAANYA 415


>gi|311087514|gb|ADP67593.1| cell division protein FtsY [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 298

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 113/286 (39%), Positives = 176/286 (61%), Gaps = 2/286 (0%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
            L + I  I  S+++D+ + EELE+ ++ +DIG+    +I+  L+     +D+     LY
Sbjct: 13  NLGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLKNSEKLY 72

Query: 87  -DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
             +   +  +L  +  P     SH P VILVVGVNG GKTT + KL++K    G  +MLA
Sbjct: 73  FLLKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGAGKTTTVAKLAEKYKLEGKSIMLA 131

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR+A I+QL+      +   +    GSD AA+ ++A K A++KK+DVLIIDTAGRL
Sbjct: 132 AADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGRL 191

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           HN   L+  + K++RV+K++D  APH  L ++D+  GQN ++Q E+FH     TG+I+TK
Sbjct: 192 HNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEIFHKALNLTGIIITK 251

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +DGTA+GG +  +    +IP+ ++G+GE + DL  F +++F   I 
Sbjct: 252 LDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFNSQEFIESIF 297


>gi|228473709|ref|ZP_04058457.1| signal recognition particle protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274856|gb|EEK13673.1| signal recognition particle protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 444

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL++ +  +    ++ +       +E+   L+ +D+  A+A++   ++  K   
Sbjct: 2   FDNLSNKLEKALHVLKGHGQITEINVAETLKEVRRALLDADVNYAIAKEFTAKVKAKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++   +   N   S  P VIL+ G+ G GKTT  GKL
Sbjct: 62  SNVLTTLQPGQLMVKIVHDELTELMGGDATGVNL--SGNPSVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +   K  L  A D +R AAIDQL I   +   +    +   +   +A +    A+
Sbjct: 120 ANFLKNKKNKKPLLVACDVYRPAAIDQLHIVGQQIGVEVFSEKENRNPVDIAQKGLAYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +   +V+IIDTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A+   +
Sbjct: 180 SNGYNVVIIDTAGRLAVDEQMMKEIADIHHAVT------PQETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V    G+++TK+DG  RGG  I I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 AFNDVLNFDGVVLTKLDGDTRGGAAISIKSVVNKPIKFVGTGEKMDAIDIFYPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|301299283|ref|ZP_07205569.1| signal recognition particle-docking protein FtsY [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853127|gb|EFK80725.1| signal recognition particle-docking protein FtsY [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 423

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 178/310 (57%), Gaps = 8/310 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +KV+S+      +  KG   +       I  ++++ R +D+   EELE+ LI +D+G  
Sbjct: 105 EEKVSSDEE---ERYDKGLEKSRKGFGAMINSLLANFRHVDEDFFEELEETLIEADVGFE 161

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF---SHRPHVILVV 117
            A KI +EL  +   ++   +  + D + E + ++     K  + +    S  P V L V
Sbjct: 162 TAMKISDELRQEVKLRNAKKKNEISDAIIEKLVEIYENEGKEEDNNLHFSSEGPTVFLFV 221

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +    G KVMLAA DTFR+ AI+QL  W  R     V     SD
Sbjct: 222 GVNGVGKTTTIGKLAHRYKMEGKKVMLAAADTFRAGAIEQLAEWGRRVGVTVVKKVEKSD 281

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A K+A+ +  D+L++DTAGRL N   LM  + K+ RV+ R  P APH VL  L
Sbjct: 282 PAAVVFDAVKKAKEEDYDILLVDTAGRLQNKVNLMKELEKIARVITREIPDAPHEVLLAL 341

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQNAL Q + F  V   TG+++TK+DGTA+GG ++ I     +PV  +G+GE ++D
Sbjct: 342 DATTGQNALTQAKQFKDVTNVTGIVLTKLDGTAKGGIVLAIRNELHLPVKLVGLGEKMDD 401

Query: 298 LEPFVAKDFS 307
           L  F  +++ 
Sbjct: 402 LRDFSPEEYV 411


>gi|325290418|ref|YP_004266599.1| signal recognition particle-docking protein FtsY [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965819|gb|ADY56598.1| signal recognition particle-docking protein FtsY [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 309

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 124/302 (41%), Positives = 188/302 (62%), Gaps = 2/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
               KL +    T     + +  I +   ++D+ + EELE+ LI+SD+G++ + ++VE L
Sbjct: 3   GLFSKLKEKLTKTRQGFVDKVERIFTGATKIDEDLYEELEEALIQSDVGISTSMELVENL 62

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K   + ++   +L +V +     L+        + S    V LVVGVNGVGKTT +GK
Sbjct: 63  RKKVKERKIADPLLLNEVLKENIVELLGEKIELKLNDSGT-TVYLVVGVNGVGKTTTLGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++   + G  V+LAAGDTFR+AAI+QL+ W  R   D +    G+D AA+ ++A + A+
Sbjct: 122 LARHFRNEGKSVLLAAGDTFRAAAIEQLEAWGQRAGVDVIKQSEGADPAAVTFDALQAAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K D+L++DTAGRLHN   LM  + KM RV++R  P APH VL +LDATTGQNA++QV 
Sbjct: 182 ARKTDILLVDTAGRLHNKVNLMKELTKMKRVVEREIPSAPHEVLLILDATTGQNAIQQVR 241

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F   A  TG+I+TK+DGTA+GG ++ I    ++PV  +G+GEG+ DL+PF    F+  +
Sbjct: 242 IFQEAAEVTGIILTKLDGTAKGGVILGIQGEARVPVKMIGIGEGLEDLKPFEPDQFAEAL 301

Query: 311 TG 312
            G
Sbjct: 302 FG 303


>gi|269955965|ref|YP_003325754.1| signal recognition particle protein [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304646|gb|ACZ30196.1| signal recognition particle protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 532

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/315 (26%), Positives = 139/315 (44%), Gaps = 27/315 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    RL     D    E+   L+ +D+ V V ++    +  +   
Sbjct: 2   FNSLSDRLTATFKNLRGRGRLSEADIDATVREIRRALLDADVAVPVVREFTSAIRERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++         P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSGALNPAQQVVKIVNEELVEILGGATRTLVL-AKVPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-----------AAA 180
           +  +   G   +L A D  R  A+ QL + A+R          G+               
Sbjct: 121 AHALKAQGHTPVLVAADLQRPNAVTQLSVVAERAGVPVFAPHPGNQGAVDLDVVIGDPVG 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A +    A+ K+ DV+I+DTAGRL  +++LM     +   +       P  VL V+DA 
Sbjct: 181 VARDGVAFARDKQHDVVIVDTAGRLGVDAVLMQQAADIRAAIN------PDEVLFVIDAM 234

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ+A+     F      TG++++K+DG ARGG  + +      P+ F   GE + D E 
Sbjct: 235 IGQDAVATASAFLEGVDFTGVVLSKLDGDARGGAALSVAKVTGRPIMFASTGEKLTDFEV 294

Query: 301 FVAKDFSAVITGCLD 315
           F     +  I    D
Sbjct: 295 FHPDRMAGRILDMGD 309


>gi|154486611|ref|ZP_02028018.1| hypothetical protein BIFADO_00428 [Bifidobacterium adolescentis
           L2-32]
 gi|154084474|gb|EDN83519.1| hypothetical protein BIFADO_00428 [Bifidobacterium adolescentis
           L2-32]
          Length = 549

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 62  LGTEVSEALNPAQQVVKIVNEELTAVLGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CS 172
           GKL   + D+G   +L A D  R  A+ QL++  +R                        
Sbjct: 121 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVVSPG 180

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +   D   +A +A + A+ K  D +IIDTAGRL  +  LM     +       D   P+ 
Sbjct: 181 QTTGDPVKVARDAVEVAKQKLYDTVIIDTAGRLGVDEELMKQARDI------RDAVQPNE 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 235 ILFVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTG 294

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 295 EGLKDFEVFHPDRMASRILDMGD 317


>gi|121608473|ref|YP_996280.1| signal recognition particle protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121553113|gb|ABM57262.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Verminephrobacter eiseniae EF01-2]
          Length = 454

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 141/304 (46%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ + KL   + ++    R+ +     +  E+   L+ +D+ + V +  +  +  K   +
Sbjct: 3   SALADKLTRLVKELRGQARITESNVQDMLREVRMALLEADVALPVVRDFIARVKDKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q ++  V+  +   +       N   +  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVLGSLKPGQTLVGIVNRELAATMGQGVADINL-AAQPPAVILMAGLQGAGKTTTTAKLA 121

Query: 133 KKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +    KV+  +GD +R AAI+QL+    +    F  S        +A  A   A+ 
Sbjct: 122 KYLIEKRKKKVLTVSGDVYRPAAIEQLQTVTRQAGGAFFPSLPEQKPLDIALAALDHARK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  +  +M  I  +   L       P   L V+DA  GQ+A+     
Sbjct: 182 HYFDVLLVDTAGRLAIDQAMMEEIKALHAALN------PVETLFVVDAMQGQDAINTARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG +RGG  + +     +P+ F GV E ++ L+ F A+  +  I 
Sbjct: 236 FREALPLTGIVLTKLDGDSRGGAALSVRQITGVPIKFAGVSEKLDGLDVFDAERHAGRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|90961604|ref|YP_535520.1| cell division protein [Lactobacillus salivarius UCC118]
 gi|90820798|gb|ABD99437.1| Cell division protein [Lactobacillus salivarius UCC118]
          Length = 423

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 178/310 (57%), Gaps = 8/310 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +KV+S+      +  KG   +       I  ++++ R +D+   EELE+ LI +D+G  
Sbjct: 105 EEKVSSDEE---ERYDKGLEKSRKGFGAMINSLLANFRHVDEDFFEELEETLIEADVGFE 161

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF---SHRPHVILVV 117
            A KI +EL  +   ++   +  + D + E + ++     K  + +    S  P V L V
Sbjct: 162 TAMKISDELRQEVKLRNAKKKNEISDAIIEKLVEIYENEGKEEDNNLHFSSEGPTVFLFV 221

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +    G KVMLAA DTFR+ AI+QL  W  R     V     SD
Sbjct: 222 GVNGVGKTTTIGKLAHRYKMEGKKVMLAAADTFRAGAIEQLAEWGRRVGVTVVKKVEKSD 281

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A K+A+ +  D+L++DTAGRL N   LM  + K+ RV+ R  P APH VL  L
Sbjct: 282 PAAVVFDAVKKAKEEDYDILLVDTAGRLQNKVNLMKELEKIARVITREIPDAPHEVLLAL 341

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQNAL Q + F  V   TG+++TK+DGTA+GG ++ I     +PV  +G+GE ++D
Sbjct: 342 DATTGQNALTQAKQFKDVTNVTGIVLTKLDGTAKGGIVLAIRNELHLPVKLVGLGEKMDD 401

Query: 298 LEPFVAKDFS 307
           L  F  +++ 
Sbjct: 402 LRDFSPEEYV 411


>gi|311085773|gb|ADP65855.1| cell division protein FtsY [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086350|gb|ADP66431.1| cell division protein FtsY [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 298

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 113/286 (39%), Positives = 176/286 (61%), Gaps = 2/286 (0%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
            L + I  I  S+++D+ + EELE+ ++ +DIG+    +I+  L+     +D+     LY
Sbjct: 13  NLGDKIYQIFLSKKIDEVLFEELEEKMLLADIGINTTNRIISNLIKDVNREDLKNSEKLY 72

Query: 87  -DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
             +   +  +L  +  P     SH P VILVVGVNG GKTT + KL++K    G  +MLA
Sbjct: 73  FLLKRKMFNILKKVEIPLEIS-SHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSIMLA 131

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR+A I+QL+      +   +    GSD AA+ ++A K A++KK+DVLIIDTAGRL
Sbjct: 132 AADTFRAAGIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGRL 191

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           HN   L+  + K++RV+K++D  APH  L ++D+  GQN ++Q E+FH     TG+I+TK
Sbjct: 192 HNKLHLIEELKKIVRVIKKIDISAPHEKLLIIDSCNGQNTIQQTEIFHKALNLTGIIITK 251

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +DGTA+GG +  +    +IP+ ++G+GE + DL  F +++F   I 
Sbjct: 252 LDGTAKGGVVFSLADQFQIPIRYIGIGEKMQDLGHFNSQEFIESIF 297


>gi|225849666|ref|YP_002729900.1| signal recognition particle-docking protein FtsY [Persephonella
           marina EX-H1]
 gi|225645118|gb|ACO03304.1| signal recognition particle-docking protein FtsY [Persephonella
           marina EX-H1]
          Length = 304

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 114/302 (37%), Positives = 185/302 (61%), Gaps = 2/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            S + KL +G + T  ++ +    I   R++D+ + E++E +L+++D+G+   ++I++ L
Sbjct: 3   KSIVSKLKEGLSKTKKQISDSFNLISFGRKIDESLFEDIEMVLLKADVGLKATEEIIQFL 62

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   + ++    L ++  E ++++L             +P VIL +G+NG GKTT IG
Sbjct: 63  REESKKRKITEGEDLKELLKEKLYEILKKCEGKLELG-DQKPAVILFLGINGSGKTTTIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G  V+LAA DTFR+AAIDQL++WA+R+ A  V    G+D +A+ Y+A   A
Sbjct: 122 KLASQFVQEGKSVVLAAADTFRAAAIDQLEVWAERSGARIVKHTQGADPSAVVYDAVNSA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +++  D+++IDTAGRLH    LM  + K+ R +K+L P  P   + VLD T GQN++ Q 
Sbjct: 182 KSRGDDIVLIDTAGRLHTKEHLMKELQKIKRTIKKLMPDQPVETILVLDGTIGQNSINQA 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG+++TK+DGTA+GG +IPI     IPV F+GVGE I DL+PF AK+F   
Sbjct: 242 KTFKESTDVTGIVITKLDGTAKGGAIIPICQELCIPVKFIGVGEDIEDLQPFDAKNFVDA 301

Query: 310 IT 311
           + 
Sbjct: 302 LF 303


>gi|83942798|ref|ZP_00955259.1| signal recognition particle-docking protein FtsY [Sulfitobacter sp.
           EE-36]
 gi|83846891|gb|EAP84767.1| signal recognition particle-docking protein FtsY [Sulfitobacter sp.
           EE-36]
          Length = 398

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 123/278 (44%), Positives = 190/278 (68%), Gaps = 1/278 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           +  R LDD + E+LE+LLI +D+GV  A ++   +   R+ K +SV  +   ++  + ++
Sbjct: 119 VVRRVLDDEMLEQLEELLISTDMGVDTALRVTANMAEGRFGKRLSVDEIKRLMATEVARI 178

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + P++KP    ++  P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA+
Sbjct: 179 MDPIAKPLPI-YAKTPQVVLVVGVNGSGKTTTIGKLASQFKAAGKNVVIAAGDTFRAAAV 237

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL++W DR     + +  GSD A+LA++A  QA+    D+L+IDTAGRL N   LM  +
Sbjct: 238 EQLQVWGDRADVPVLTAGQGSDPASLAFDAMTQAERDGADLLLIDTAGRLQNRGDLMEEL 297

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K++RV+++ DP APH+ L VLDATTGQNAL QV++F  ++  +GL+MTK+DGTA+GG L
Sbjct: 298 AKIVRVIRKKDPSAPHNTLLVLDATTGQNALNQVKVFQEISDVSGLVMTKLDGTAKGGVL 357

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           + +     +P++ +GVGE I+DL+PF  ++F+  + G 
Sbjct: 358 VALADKFGLPIHAIGVGEQIDDLQPFDPQEFADALMGL 395


>gi|322435167|ref|YP_004217379.1| signal recognition particle protein [Acidobacterium sp. MP5ACTX9]
 gi|321162894|gb|ADW68599.1| signal recognition particle protein [Acidobacterium sp. MP5ACTX9]
          Length = 465

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/313 (29%), Positives = 147/313 (46%), Gaps = 23/313 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL+     +     + +        E+   L+ SD+ + V + +VE +  K   
Sbjct: 2   FENLSEKLQRSFKTLRGQGTITEENISDAMREIRLALLESDVNLEVVKDLVEHIRVKAMG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V+      ++++  V + +  +L      F    S  P V+L+ G+ G GKTT   KL
Sbjct: 62  TQVTTALSPSEQIVKIVHDELVTLLGKDIAKFRT-ASQPPSVVLMAGLQGSGKTTTSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA-------LAYE 184
           ++ +   G + ML + D +R AA  QL + A  T  +    ++             LA E
Sbjct: 121 AQWLKKGGHRPMLVSVDVYRPAARAQLAVVAKSTGVNLYEGKLDESVQNGTPEVLRLAKE 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K+A     D+LI+DTAGRL  +++LM  + ++ ++L       P  +L V DA TGQ+
Sbjct: 181 AKKEAANFGCDILIVDTAGRLGIDAVLMDEMAELKKLLN------PSEILFVADAMTGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   + F+ +   TG I+TKMDG ARGG  + I      P+ FLG GE  +  EPF   
Sbjct: 235 AVNSAKAFNDLLTITGAILTKMDGDARGGAALSIRQVTGAPIKFLGTGEKPDAFEPFHPD 294

Query: 305 DFSAVITGCLDYG 317
              + I G  D  
Sbjct: 295 RIVSRIMGHGDIA 307


>gi|83955621|ref|ZP_00964201.1| signal recognition particle-docking protein FtsY [Sulfitobacter sp.
           NAS-14.1]
 gi|83839915|gb|EAP79091.1| signal recognition particle-docking protein FtsY [Sulfitobacter sp.
           NAS-14.1]
          Length = 388

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 123/278 (44%), Positives = 190/278 (68%), Gaps = 1/278 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           +  R LDD + E+LE+LLI +D+GV  A ++   +   R+ K +SV  +   ++  + ++
Sbjct: 109 VVRRVLDDEMLEQLEELLISTDMGVDTALRVTANMAEGRFGKRLSVDEIKRLMATEVARI 168

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + P++KP    ++  P V+LVVGVNG GKTT IGKL+ +   AG  V++AAGDTFR+AA+
Sbjct: 169 MDPIAKPLPI-YAKTPQVVLVVGVNGSGKTTTIGKLASQFKAAGKNVVIAAGDTFRAAAV 227

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL++W DR     + +  GSD A+LA++A  QA+    D+L+IDTAGRL N   LM  +
Sbjct: 228 EQLQVWGDRADVPVLTAGQGSDPASLAFDAMTQAERDGADLLLIDTAGRLQNRGDLMEEL 287

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K++RV+++ DP APH+ L VLDATTGQNAL QV++F  ++  +GL+MTK+DGTA+GG L
Sbjct: 288 AKIVRVIRKKDPSAPHNTLLVLDATTGQNALNQVKVFQEISDVSGLVMTKLDGTAKGGVL 347

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           + +     +P++ +GVGE I+DL+PF  ++F+  + G 
Sbjct: 348 VALADKFGLPIHAIGVGEQIDDLQPFDPQEFADALMGL 385


>gi|104774251|ref|YP_619231.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116514341|ref|YP_813247.1| Signal recognition particle GTPase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|103423332|emb|CAI98179.1| Signal recognition particle-docking protein FtsY [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116093656|gb|ABJ58809.1| signal recognition particle-docking protein FtsY [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325126039|gb|ADY85369.1| Cell division protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 442

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 103/295 (34%), Positives = 168/295 (56%), Gaps = 6/295 (2%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   ++      +   ++  R +D+   ++LE+LLI SD+G   ++++ ++L  +   +
Sbjct: 140 KGLEKSNKGFGARLNAFLAKFRTVDEDFFDDLEELLIESDVGYETSEELTDQLREEAKLQ 199

Query: 78  DVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
               +  L  V      E+  +     ++   +D + +P+V L VGVNG GKTT +GKL+
Sbjct: 200 KAKSRDDLKRVIVQKLVEVYDENANSENEKLAYDPNAKPNVYLFVGVNGAGKTTTVGKLA 259

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K+  D G KV+L A DTFR+ A++QL  W  RT    V     +D AA+ Y+  ++A A+
Sbjct: 260 KRFHDQGKKVLLVAADTFRAGAVEQLVEWGKRTGVPVVTGPDKADPAAVVYDGLERAIAE 319

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           + D L++DTAGRL N   LM  + K+ R +K+  P  P   L VLD +TGQNAL Q + F
Sbjct: 320 EADYLLVDTAGRLQNKVNLMNELEKIQRTIKKRLPDQPAETLLVLDGSTGQNALLQAKDF 379

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 +GL++TK+DG+++GG ++ I    K+PV  +G+GE   DL  F A +++
Sbjct: 380 DKTTKLSGLVLTKLDGSSKGGVVLSIRHEMKLPVKLVGLGEKAEDLADFDAANYA 434


>gi|256160521|ref|ZP_05458210.1| signal recognition particle protein [Brucella ceti M490/95/1]
 gi|256255727|ref|ZP_05461263.1| signal recognition particle protein [Brucella ceti B1/94]
 gi|261222941|ref|ZP_05937222.1| signal recognition particle protein [Brucella ceti B1/94]
 gi|265998900|ref|ZP_06111457.1| signal recognition particle protein [Brucella ceti M490/95/1]
 gi|260921525|gb|EEX88178.1| signal recognition particle protein [Brucella ceti B1/94]
 gi|262553589|gb|EEZ09358.1| signal recognition particle protein [Brucella ceti M490/95/1]
          Length = 523

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   +  +     L +        E+   LI +D+ + V +   + +  K   
Sbjct: 2   FETLQERLGSILNGLTGRGALSESDVTAALREVRRALIEADVSLEVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + + +ML       + + +  P VI++VG+ G GKTT  GK+
Sbjct: 62  AEILKSIKPGQMVVKIVHDELVEMLGTEGVAIDLN-APAPVVIMMVGLQGSGKTTATGKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      +V++A+ DT R AA +QL+    +T  D +    G     +A  A + A+
Sbjct: 121 AKRLTERQRKRVLMASLDTRRPAAQEQLRQLGLQTGVDTLPIIAGQSPVEIARRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+    
Sbjct: 181 LGAHDVVILDTAGRTHIDEPLMVEMADIRKAAN------PHEILLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+  +  GE ++ LE F  K  +  I
Sbjct: 235 NFDERVGITGIVLTRMDGDGRGGAALSMRAITGKPIKLIATGEKMDALEEFYPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|154251871|ref|YP_001412695.1| signal recognition particle protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154155821|gb|ABS63038.1| signal recognition particle protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 504

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 161/307 (52%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + + +L + ++ +     +S + +D+ +RE +   L+ +D+ + VA+  ++++  +  
Sbjct: 2   FENLTGRLGDVLSKLKGRGALSEKDVDEAMRE-VRRALLEADVALPVAKSFIDKVRARAI 60

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIG 129
             +V       Q+V+  V + + +ML       +    +  P VI++VG+ G GKTT   
Sbjct: 61  GHEVLKSVTPGQQVIKIVHDELVEMLGGAEADTSISLRAAAPVVIMMVGLQGSGKTTSTA 120

Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           K++K+M+     ++M+A+ DT R AA +QLKI  ++     +    G     +A  A + 
Sbjct: 121 KIAKRMTTRDKRRIMMASLDTRRPAAQEQLKILGEQAGVATLPIVAGQQPVQIAKRAVEA 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DVL++DTAGR+H +  LMA       V +  D   PH  L V D+ TGQ+A+  
Sbjct: 181 ARLGGFDVLMLDTAGRIHIDEDLMAE------VAQVRDAANPHETLLVADSLTGQDAVNV 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F+A  G TG+++T++DG  RGG  + +     +P+  LG GE ++ LE F A   + 
Sbjct: 235 AEQFNARIGVTGIVLTRVDGDGRGGAALSMRAVTGVPIKLLGTGEKMDALEDFRADRVAG 294

Query: 309 VITGCLD 315
            I G  D
Sbjct: 295 RILGMGD 301


>gi|93006809|ref|YP_581246.1| signal recognition particle protein [Psychrobacter cryohalolentis
           K5]
 gi|92394487|gb|ABE75762.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Psychrobacter cryohalolentis K5]
          Length = 515

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I  + +L +        E+   L+ +D+ + V +  V+ +  +   
Sbjct: 2   FDTLTERLSSSLRNIAGTGQLTEDNIKDTLREVRMALLEADVALPVTRDFVKRVKEQALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q  +  V + + +M+   ++         P + L+ G+ G GKTT  GKL
Sbjct: 62  AEVLKELAPGQAFVKIVHDELTEMMGSANQQLEM-TGKPPVIYLLAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KVML + D +R AAI QL+  A + +A FV S    +   +A  A ++A+
Sbjct: 121 AKFLQERHKKKVMLVSADVYRPAAIAQLEQVAGQVNAKFVNSSSDENPIDIALRAIEEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D+LIIDTAGRL  +  +M  I  +   +       P   L V+DA TGQ+A    +
Sbjct: 181 IQYQDILIIDTAGRLAIDETMMDEIKALTAAVN------PSETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK DG ARGG  + +      P+ FLG GE ++ LE F  +  +  I
Sbjct: 235 AFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLDALELFHPERIAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|313158014|gb|EFR57420.1| signal recognition particle protein [Alistipes sp. HGB5]
          Length = 441

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + KL+     +    R+ +       +E+   LI +D+   VA+   +E+  K   
Sbjct: 2   FENLTDKLERSFKILKGEGRITEINIAETLKEIRRALIDADVNYKVAKSFTDEVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q +   V + +  ++   +     + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QDVLKAVKPGQMMTKIVRDELALLMGGTATDIRLEGN--PAVILIAGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +    G +V+L AGD +R AAIDQLK+   +   +    E   D   +A  A K A+
Sbjct: 120 ALFIKSKKGRQVLLVAGDVYRPAAIDQLKVLGGQIGVEVYTEEGSKDPVQIAENAIKYAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRL  +  +M  I  +   +K      P   L V+DA TGQ+A+    
Sbjct: 180 QHAFNVVIVDTAGRLAVDEAMMQEITAIKTAVK------PSETLFVVDAMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  I I      P+ F+  GE ++ L+ F  +  +  I
Sbjct: 234 EFNDRLDFDGVVLTKLDGDTRGGAAISIRSVVNKPLKFISSGEKMDALQVFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|330836478|ref|YP_004411119.1| signal recognition particle subunit FFH/SRP54 (srp54) [Spirochaeta
           coccoides DSM 17374]
 gi|329748381|gb|AEC01737.1| signal recognition particle subunit FFH/SRP54 (srp54) [Spirochaeta
           coccoides DSM 17374]
          Length = 444

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIV-----EELL 71
           F S S K    +  +    ++ +       EE++  L+ +D+ + V ++ V     E L 
Sbjct: 2   FESISQKFSGIMRSLSGKSKISEKNVRDAVEEIKLALLDADVNLRVVRRFVNGTLDEALG 61

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K  +     Q+ +  V + +  +L  P  +  +        VIL++G+ G GKTT   K
Sbjct: 62  EKVLSAVDPGQQFVKIVYDRMVALLGDPEGQKLSLRGPDVVTVILMMGLQGSGKTTTSAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++   G + +LAA D  R AAIDQL++   +           SD   +A +A  +A+
Sbjct: 122 LALRLKKEGRRPLLAAADLVRPAAIDQLQVLGSKVDVPVHVLPGASDPVKVAVDALARAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            ++ DVLIIDTAGR+H +  LM  I K+   +K      P   L V DA TGQNA+   E
Sbjct: 182 REQRDVLIIDTAGRMHLDDTLMTEIKKVRDAVK------PDETLFVADAMTGQNAVSIAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+I++K D  ARGG  + +      P+ F+GVGE   D EPF  +  ++ I
Sbjct: 236 EFEKRIGISGVILSKFDSDARGGAALSLRSVVGKPIKFIGVGEKPEDFEPFYPERMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|254449728|ref|ZP_05063165.1| signal recognition particle protein [Octadecabacter antarcticus
           238]
 gi|198264134|gb|EDY88404.1| signal recognition particle protein [Octadecabacter antarcticus
           238]
          Length = 502

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   L+ +D+ + VA+ +++ +  K   
Sbjct: 2   FESLSDRLSGVFDRLTKQGALSEDDVKTALREVRIALLEADVSLPVARDLIKAVQEKASG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L     P      + P  IL+VG+ G GKTT   KL
Sbjct: 62  QSVTKSVTPGQQVVKIVHDELVHVLQGDGDPGALKIDNPPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++    G KV++A+ D  R AA++QL+I   +   D +    G D   +A  A   A 
Sbjct: 122 AKRLKDREGKKVLMASLDVNRPAAMEQLQILGAQIGVDTLPIVKGEDPVQIAKRAKTAAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV I+DTAGRLH ++ L+A    +       D   P   L V+D  TGQ+A+    
Sbjct: 182 MGGYDVYILDTAGRLHIDAELIAQAAAV------RDVAQPRETLLVVDGLTGQDAVNVAT 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F A+  +  I
Sbjct: 236 EFDDKIGVTGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKLDAIEEFHAERVAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|87311715|ref|ZP_01093831.1| signal recognition particle protein [Blastopirellula marina DSM
           3645]
 gi|87285609|gb|EAQ77527.1| signal recognition particle protein [Blastopirellula marina DSM
           3645]
          Length = 481

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 150/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREEL---EDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FAS    L+  +  +    +L D  +R+ L   E+ +I +D+   V Q  +  +  +   
Sbjct: 2   FASLQDNLRTALKSLRGKGKLTDANMRDGLRMVEEAMIEADVAYPVVQDFMARVSEEAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q+++  V E + ++L P+    + +      V+++ G+ G GKTT  GKL
Sbjct: 62  QKVLKSLNPDQQLVGVVHEQLIQLLGPVDPSLHLEKD--VTVLMMCGLQGAGKTTTCGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +   G K +L A D  R AA+ QL +  +   A     E  SD  A+   A K A+ 
Sbjct: 120 ARLIGTEGKKALLVAADLQRPAAVQQLHVVGESVGAKVYSEENASDPIAVCQNAVKFARE 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             ++V+I+DTAGRL  +  LM  +  + R +       P     V+D  TGQ+A+   + 
Sbjct: 180 NGINVVILDTAGRLAIDEELMEQLKTIDRKIG------PDQCFLVVDGMTGQDAVNSAKA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+IMTK+DG ARGG L+ +     +P+ F+G+ E ++ LEPF A   +  I 
Sbjct: 234 FNDALELDGVIMTKLDGDARGGALLSVKHVTGVPIKFIGISEHMDGLEPFYADRMAGRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|239817341|ref|YP_002946251.1| signal recognition particle-docking protein FtsY [Variovorax
           paradoxus S110]
 gi|239803918|gb|ACS20985.1| signal recognition particle-docking protein FtsY [Variovorax
           paradoxus S110]
          Length = 302

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 125/308 (40%), Positives = 184/308 (59%), Gaps = 7/308 (2%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           + +E   W  KL  G   T      GI  +  + ++D+ + EELE  L+ +D GV   + 
Sbjct: 1   MPAERKGWFDKLKTGLRKT----GTGIQAVFVNAQIDEALYEELESALLMADAGVKATEF 56

Query: 66  IVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++++L  +   +  +    +  + ++ I  +L PL KP        P VI+V GVNG GK
Sbjct: 57  LLDDLRGRVKRQMATDAAQVKRLLADAITDLLQPLEKPLVIG-QFTPTVIMVAGVNGAGK 115

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+K ++  G  V+LAA DTFR+AA +QL +WADR + + V S+ G D +A++++
Sbjct: 116 TTSIGKLTKHLASEGASVLLAAADTFRAAAREQLLVWADRNTVEIV-SQEGGDPSAVSFD 174

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A    +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQN
Sbjct: 175 AVTAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRVVTKADATAPHEVLLVIDGNTGQN 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL QV  F    G TGL++TK+DGTA+GG L  I     IPVYF+GVGE + DLE F A+
Sbjct: 235 ALAQVRAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLETFNAR 294

Query: 305 DFSAVITG 312
           +F+  + G
Sbjct: 295 EFALALLG 302


>gi|110800008|ref|YP_696402.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens ATCC 13124]
 gi|168207934|ref|ZP_02633939.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens E str. JGS1987]
 gi|168214192|ref|ZP_02639817.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens CPE str. F4969]
 gi|182625848|ref|ZP_02953614.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens D str. JGS1721]
 gi|110674655|gb|ABG83642.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens ATCC 13124]
 gi|170660748|gb|EDT13431.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens E str. JGS1987]
 gi|170714304|gb|EDT26486.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens CPE str. F4969]
 gi|177908882|gb|EDT71374.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens D str. JGS1721]
          Length = 304

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 121/299 (40%), Positives = 180/299 (60%), Gaps = 1/299 (0%)

Query: 14  IRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             KL  G   T   L + I + ++ +  +DD + EELE+ LI SDIG+    +I++ L  
Sbjct: 6   FDKLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTVEIIDRLKA 65

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K   + ++   ++    + +   +M        +  +   V+L++GVNGVGKTT IGK++
Sbjct: 66  KIRKEKINDVEMVKPALKEVIAEMMLEGDSEEEEEDNEKKVMLIIGVNGVGKTTSIGKIA 125

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +  + G KV+LAA DTFR+AAIDQL IW+ R + D V  + GSD AA+ ++A + A+A+
Sbjct: 126 ARNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKAR 185

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            VD+LI DTAGRLHN   LM  + K+ R++ R         L VLD TTGQNA+ Q + F
Sbjct: 186 DVDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQF 245

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                  G+I+TK+DGTA+GG +I I  T  IPV ++GVGEG+ DL+ F AK+F+  + 
Sbjct: 246 MEACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVEDLQKFNAKEFAEALL 304


>gi|116071796|ref|ZP_01469064.1| Cell division transporter substrate-binding protein FtsY
           [Synechococcus sp. BL107]
 gi|116065419|gb|EAU71177.1| Cell division transporter substrate-binding protein FtsY
           [Synechococcus sp. BL107]
          Length = 530

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 174/312 (55%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ E + W+ +L +G   T      G+ + +    L   V +ELE LL+R+D GV    
Sbjct: 216 QISLEEIDWLGRLRRGLEKTRQGFVTGLLENLGDDPLTPEVLDELETLLLRADAGVQATD 275

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVN 120
           +++E L  +     V     +  + + +  +L    K    P       R ++ L+VGVN
Sbjct: 276 QVLEALRQRMNEDVVDPVEGIRFLKDQLRGLLDAPIKASGVPLLAPERGRLNIWLMVGVN 335

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W +R+    V +   + D A
Sbjct: 336 GVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVEVWGERSDVAVVSNPSSNADPA 395

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+++  D+L++DTAGRL     LM  + K+ +++ RL P A    L VLDA
Sbjct: 396 AVVFDAIGAARSRDTDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEANVESLLVLDA 455

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN LRQ   F   AG TG+++TK+DGTARGG  + +     +P+ F+G GEGI DL 
Sbjct: 456 SQGQNGLRQAMAFAKAAGLTGVVVTKLDGTARGGVALAVSSEAGLPIRFIGAGEGIRDLR 515

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 516 PFNSFEFVEALL 527


>gi|303258186|ref|ZP_07344193.1| signal recognition particle protein [Burkholderiales bacterium
           1_1_47]
 gi|302858939|gb|EFL82023.1| signal recognition particle protein [Burkholderiales bacterium
           1_1_47]
          Length = 464

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 147/309 (47%), Gaps = 21/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S + +L + +  I    RL +     +  E+   L+ +D+ + V + ++  +  K   
Sbjct: 2   LDSLTQRLTKVVKTIRGQARLTESNMQDMLREIRIALLEADVAIPVVKDLIARIKEKALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVILVVGVNGVGKTTV 127
            +V       Q ++  V + + K++        +  N   +  P +IL+ G+ G GKTT 
Sbjct: 62  TEVQTSLTPGQALVGIVHDELTKVIGGEDPENVREINL-ATQPPAIILLAGLQGAGKTTT 120

Query: 128 IGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GKL K + +   K +   + D +R AAIDQL+  + + + DF  S        +A +A 
Sbjct: 121 AGKLGKWLKEEKKKKVLTVSADVYRPAAIDQLQTVSQQANIDFFPSTPNEKPLDIARKAL 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+    DVLI+DTAGRL  +  +M  +  + + L       P     V+DA  GQ+A+
Sbjct: 181 EYAKLHYYDVLIVDTAGRLAIDEQMMNEVSDLEKFLN------PIETFFVVDAMVGQDAV 234

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F      TG+I+TK+DG +RGG  + + +    P+ F+GVGE +N  + F  +  
Sbjct: 235 NTAKAFGEKLPLTGVILTKVDGDSRGGAALSVRMVTGKPIKFMGVGEKLNGFQRFDPQAM 294

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 295 AGRILGMGD 303


>gi|319404853|emb|CBI78454.1| signal recognition particle protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 515

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 139/305 (45%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   ++++     L D        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FETLQERLGSILSNLTGRGVLSDKDITTALREIRRALLEADVALDVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +       Q V+  V + +  ML       + + +  P VI++VG+ G GKTT   KL
Sbjct: 62  TTIVKSIKPGQMVVKIVHDELVHMLGGEGVLSDLN-APAPVVIMLVGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ D    KV++A+ DT R AA +QL+   ++     +          ++  A + A+
Sbjct: 121 AKRLRDKHNKKVLIASLDTRRPAAQEQLRQLGEQVQVPSLPIIPDQSPVDISARAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++D AGR H +  LM  + ++           P+ ++ V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDAAGRNHIDEALMLELKEIKAA------SQPYEIMLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+I+T+M+   RGG  + +      P+  +G GE ++ LE F     +  I
Sbjct: 235 SFDERIGITGIILTRMESDGRGGAALSMRAVTGKPIKAIGTGEKMDALEEFHPGRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|299144130|ref|ZP_07037210.1| signal recognition particle-docking protein FtsY [Peptoniphilus sp.
           oral taxon 386 str. F0131]
 gi|298518615|gb|EFI42354.1| signal recognition particle-docking protein FtsY [Peptoniphilus sp.
           oral taxon 386 str. F0131]
          Length = 410

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 127/302 (42%), Positives = 184/302 (60%), Gaps = 2/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           LS  +KL +G   T  ++   I  I+ S  ++DD + E+LED+LI +DIG+    K+++ 
Sbjct: 109 LSIFQKLKQGLTKTRHEMGVKINTILGSYVKIDDEMLEDLEDILISADIGMETTMKLIDN 168

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L      + ++   ++  + +   K LM  S          P +ILVVGVNGVGKTT IG
Sbjct: 169 LRNTIIQEKINDPNMVKPLLKEEVKKLMNDSLDSKIK-KESPTIILVVGVNGVGKTTTIG 227

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KLS K+   G KV++AA DTFR+AAIDQLK W DR + D +    G+D AA+ ++    A
Sbjct: 228 KLSSKLKMEGNKVLIAAADTFRAAAIDQLKTWGDRANVDVISHNEGADPAAVIFDGITAA 287

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +++  D+LI DTAGRLHN + LM  + K+ RV+ R  P+A    L VLDATTGQNA+ Q 
Sbjct: 288 KSRNSDILICDTAGRLHNKANLMKELEKINRVIDREYPNANRETLLVLDATTGQNAMNQA 347

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  V   +G+++TK+DGTA+GG +I +    +IP+  +GVGEGI+DL+ F    F   
Sbjct: 348 KTFKEVCSISGIVLTKLDGTAKGGVVIALQSELQIPIKLVGVGEGIDDLQEFELNSFIDA 407

Query: 310 IT 311
           I 
Sbjct: 408 IF 409


>gi|291484149|dbj|BAI85224.1| signal recognition particle-like (SRP) component [Bacillus subtilis
           subsp. natto BEST195]
          Length = 446

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ I+ I    ++ +     +  E+   L+ +D+   V +  V+++  +  
Sbjct: 2   AFEGLADRLQQTISKIRGKGKVSEQDVKDMMREVRLALLEADVNFKVVKDFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++              P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTELMGGEESKIAV-AKRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D +I+DTAGRLH +  LM  +  +  +        P  +  V+D+ TGQ+A+   
Sbjct: 181 KEEHYDYVILDTAGRLHIDHELMDELTNVKEIAN------PEEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ LEPF  +  ++ 
Sbjct: 235 KSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAGLGEKLDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|229541116|ref|ZP_04430176.1| signal recognition particle protein [Bacillus coagulans 36D1]
 gi|229325536|gb|EEN91211.1| signal recognition particle protein [Bacillus coagulans 36D1]
          Length = 447

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  +  I    ++ +     +  E+   L+ +D+   V +  V+++  +  
Sbjct: 2   AFEGLAERLQGTMQKIRGKGKVTESDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVLKSLTPGQQVIKIVQEELTNLMGGSQSKIAV-AKRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +        +L A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKYNRTPLLVAADIYRPAAIKQLETLGKQLGMPVFSLGDKISPVEIARQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D +IIDTAGRLH +S LM  + ++  +        P  +  V+DA TGQ+A+   
Sbjct: 181 KEEHHDTVIIDTAGRLHIDSELMNELKEIKEL------AHPDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+I+TK+DG  RGG  + I    + P+ F G+GE ++ LEPF  +  ++ 
Sbjct: 235 QSFNDQLGITGVILTKLDGDTRGGAALSIRAVTEKPIKFAGMGEKMDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|260432705|ref|ZP_05786676.1| signal recognition particle protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416533|gb|EEX09792.1| signal recognition particle protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 502

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  V+++  +   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARAFVKKVQEQATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +   L     P      + P  IL+VG+ G GKTT  GKL
Sbjct: 62  QAVTKSITPGQQVVKIVHDALVDTLRGEEDPGKLKIDNPPAPILMVGLQGSGKTTTTGKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G KV++A+ D +R AA+DQL +   +   D +    G     +A  A +QA 
Sbjct: 122 AKRLKEKEGKKVLMASLDVYRPAAMDQLAVLGTQIGVDTLPIVPGQKPVDIAKRAKQQAT 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH + +LM  + ++  V+       P   L V+D  TGQ A+   E
Sbjct: 182 LGGYDVYMLDTAGRLHIDEVLMDEVEQVRNVVD------PRETLLVVDGLTGQVAVEVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A  G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F     +  I
Sbjct: 236 EFDAKVGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPDRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|223995257|ref|XP_002287312.1| signal recognition particle 54 kDA subunit [Thalassiosira
           pseudonana CCMP1335]
 gi|220976428|gb|EED94755.1| signal recognition particle 54 kDA subunit [Thalassiosira
           pseudonana CCMP1335]
          Length = 486

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 154/311 (49%), Gaps = 22/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S  L E   +    +R+ +       + +   L+ +D+ + VA  +++ +  +   
Sbjct: 2   FDQLSNALTEVAKNFGGKQRMTENSIQPALKSVRRALLDADVNLDVATALIDGVKRRSLG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNW-------DFSHRPHVILVVGVNGVGK 124
           K+V+      Q+ +  + + +  M+   +   N          ++ P VIL+ G+ G GK
Sbjct: 62  KEVTKGVTAEQQFIKAMYDELLDMMGGEANESNTMATLAHSSVANEPAVILLAGLQGAGK 121

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL+ ++     KV+L A D +R AAI+QL+I   +   +     + +D A +A E
Sbjct: 122 TTAAGKLAFRLPKRNRKVLLVAADVYRPAAIEQLQILGKQIGVEVFSMGVDADPADIAKE 181

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A ++A+ +  D +++DTAGR   +  LM  + ++ + ++      P   L V+DA TGQ 
Sbjct: 182 AVEKAKREGFDTVVVDTAGRQVVDEELMEELRRVKKTVE------PDETLLVVDAMTGQA 235

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A      F A  G +G I+TK+DG +RGG  + I      P+ F+GVGE  NDLEPF   
Sbjct: 236 AASLTASFDAAVGISGAILTKLDGDSRGGAAVSIRGVSGKPIKFVGVGEKTNDLEPFYPD 295

Query: 305 DFSAVITGCLD 315
             ++ I G  D
Sbjct: 296 RMASRILGMGD 306


>gi|282854588|ref|ZP_06263923.1| signal recognition particle protein [Propionibacterium acnes J139]
 gi|282582170|gb|EFB87552.1| signal recognition particle protein [Propionibacterium acnes J139]
 gi|314981873|gb|EFT25966.1| signal recognition particle protein [Propionibacterium acnes
           HL110PA3]
 gi|315090705|gb|EFT62681.1| signal recognition particle protein [Propionibacterium acnes
           HL110PA4]
          Length = 528

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 148/308 (48%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L      +    RL D   +    ++   L+ +D+ ++V ++ V  +  + + 
Sbjct: 2   FDTLQDRLASTFKGLRGKGRLTDADIDATTRQIRIALLEADVNLSVVKEFVAAIKERCHG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++S      Q+++  V+E + ++L   ++   +  +    ++++ G+ G GKTT+ GKL
Sbjct: 62  EELSKALNPTQQIVKIVNEELVEILGGQTRTVRFAKTPS-TIVMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
           ++   + G   +LAA D  R  A+ QL++  +R        E G+   D   +A +A  +
Sbjct: 121 AQWFKEEGHSPLLAACDLQRPNAVTQLQVVGERAGVHVFAPEPGNGVGDPVQVARDAVAE 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K  DV+IIDTAGRL  ++ +MA    +           P   L V+DA  GQ+A+  
Sbjct: 181 AEHKLYDVVIIDTAGRLGVDAEMMAQAADIKTATD------PDETLFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G  G+++TK+DG ARGG  + I      P+ F   GEG+ D + F     ++
Sbjct: 235 AVAFQEGVGFDGVVLTKLDGDARGGAALSIARVVGKPIMFASSGEGLKDFDVFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDM 302


>gi|149174765|ref|ZP_01853390.1| cell division protein FtsY [Planctomyces maris DSM 8797]
 gi|148846459|gb|EDL60797.1| cell division protein FtsY [Planctomyces maris DSM 8797]
          Length = 315

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 122/311 (39%), Positives = 173/311 (55%), Gaps = 10/311 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    +L +G   T   L+  + D+  +  + DD   E+ E  LI++D+GV  +  I EE
Sbjct: 1   MGLFDRLKRGLEKTKEVLRTDVRDLFKAGEILDDQKIEQFEARLIKTDMGVVASSAICEE 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP--------HVILVVGVN 120
           +  K   + V +  +   V E I  +L       ++      P         VILV GVN
Sbjct: 61  IRKKHGGRTVILDEIEETVKEKIRTLLEGEGDTKWDISAPLSPLNKNPDGVTVILVAGVN 120

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT I KL+  +      V+LAAGDTFR+AA++QL +WADR   + V    G+D A+
Sbjct: 121 GVGKTTSIAKLANLILKQNKTVLLAAGDTFRAAAVEQLTMWADRLGCEIVTRPDGTDPAS 180

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY   ++A    VD LIIDTAGRL  ++ LM  + K+ RV+ +  P+APH  L VLDAT
Sbjct: 181 VAYSGCERALETGVDYLIIDTAGRLQTHTNLMEELEKIKRVVSKKIPNAPHESLLVLDAT 240

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN + Q E F      +GLI+ K+DGTARGG  + I     IPV ++GVGE I+DLE 
Sbjct: 241 TGQNGISQAEHFSKSIECSGLILAKLDGTARGGVTVAIRQKMGIPVKYVGVGEQIDDLEL 300

Query: 301 FVAKDFSAVIT 311
           F ++ F   + 
Sbjct: 301 FNSQGFVDALF 311


>gi|294787392|ref|ZP_06752645.1| signal recognition particle protein [Parascardovia denticolens
           F0305]
 gi|315227040|ref|ZP_07868827.1| signal recognition particle protein [Parascardovia denticolens DSM
           10105]
 gi|294484748|gb|EFG32383.1| signal recognition particle protein [Parascardovia denticolens
           F0305]
 gi|315119490|gb|EFT82623.1| signal recognition particle protein [Parascardovia denticolens DSM
           10105]
          Length = 544

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 148/322 (45%), Gaps = 32/322 (9%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L     ++ S  +L     DG   E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLTGAFKNLRSKGKLTESDIDGTIREIRRALLDADVSLDVVKSFTARVRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
             ++V+      Q+V+  V++ + ++L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 62  LGEEVNKALNPAQQVVSIVNDELTQILGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV---------------CSE 173
           GKL   + D G   +L A D  R  A+ QL++  +R                       +
Sbjct: 121 GKLGYWLKDLGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPELGVQSSSSDVVSPGQ 180

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D   +A  + + A+ K  D +IIDTAGRL  +  LM     +       D   P+ +
Sbjct: 181 ATGDPVKVARGSIEVAKQKLYDAVIIDTAGRLGVDEELMKQARDI------RDAVHPNEI 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+DA  GQ+A+R  + F      TG++++K+DG ARGG  + +      P+ F   GE
Sbjct: 235 LFVIDAMIGQDAVRTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFSSTGE 294

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
           G+ D E F     ++ I    D
Sbjct: 295 GLKDFEVFHPDRMASRILDMGD 316


>gi|168210652|ref|ZP_02636277.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens B str. ATCC 3626]
 gi|168217002|ref|ZP_02642627.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens NCTC 8239]
 gi|170711266|gb|EDT23448.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens B str. ATCC 3626]
 gi|182380866|gb|EDT78345.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens NCTC 8239]
          Length = 304

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 121/299 (40%), Positives = 179/299 (59%), Gaps = 1/299 (0%)

Query: 14  IRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             KL  G   T   L + I + ++ +  +DD + EELE+ LI SDIG+    +I++ L  
Sbjct: 6   FDKLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTVEIIDRLKA 65

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K   + ++   ++    + +   +M        +      V+L++GVNGVGKTT IGK++
Sbjct: 66  KIRKEKINDVEMVKPALKEVIAEMMLEGDSEEEEDDKEKKVMLIIGVNGVGKTTSIGKIA 125

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +  + G KV+LAA DTFR+AAIDQL IW+ R + D V  + GSD AA+ ++A + A+A+
Sbjct: 126 ARNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKAR 185

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            VD+LI DTAGRLHN   LM  + K+ R++ R         L VLD TTGQNA+ Q + F
Sbjct: 186 DVDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQF 245

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                  G+I+TK+DGTA+GG +I I  T  IPV ++GVGEG+ DL+ F AK+F+  + 
Sbjct: 246 MEACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVEDLQKFNAKEFAEALL 304


>gi|322712654|gb|EFZ04227.1| signal recognition particle 54 kDa protein [Metarhizium anisopliae
           ARSEF 23]
          Length = 522

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 144/306 (47%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   +T++   + LD    D + +E+   L+ +D+ V +  ++ + + +    
Sbjct: 3   LQDLGRRINAAVTNLTRDQNLDEKAFDNMLKEICAALLEADVNVKLVMQLRKSIKSTVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           KD+        + +      + +++ P ++PF      +P+VI+ VG+ G GKTT   KL
Sbjct: 63  KDLPPAVNKKRLIQKAVFDELVQLVDPHAEPFKPK-KGKPNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G +  L   DTFR+ A DQLK  A +    +  S   +D AA+A     Q + 
Sbjct: 122 ARHYQTRGFRACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAAVARAGVDQFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K DV+I+DT+GR    S L   +  +   +       P   + VLDA+ GQ A  Q + 
Sbjct: 182 EKFDVIIVDTSGRHRQESALFQEMIDIQTAI------RPDETIMVLDASIGQQAESQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK DG A GGG I  V     P+ F+G GE + DLE F  + F   + 
Sbjct: 236 FKEAADFGAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDLERFAPQQFVQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|160896956|ref|YP_001562538.1| signal recognition particle protein [Delftia acidovorans SPH-1]
 gi|160362540|gb|ABX34153.1| signal recognition particle protein [Delftia acidovorans SPH-1]
          Length = 464

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 146/304 (48%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ + KL   + ++    R+ +     +  E+   L+ +D+ + V +  V  +  K   +
Sbjct: 3   SALTDKLSRLVKEMRGQARITESNVQDMLREVRMALLEADVALPVVRDFVARVKEKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q ++  V++ +   +       N + +  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVLGSLQPGQLLVSIVNKELAATMGEGVADINLN-AQPPAVILMAGLQGAGKTTTTAKLA 121

Query: 133 KKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K +      KV+  +GD +R AAI+QLK    +  A++  S        +A  A   A+ 
Sbjct: 122 KHLIERRKKKVLTVSGDVYRPAAIEQLKTVTAQAGAEWFPSTPDQKPHDIAVAALDYAKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  + +LMA I  +   LK      P   L V+DA  GQ+A+   + 
Sbjct: 182 HFFDVLLVDTAGRLAIDELLMAEIKDLHATLK------PVETLFVVDAMQGQDAINTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG +RGG  + +      P+ F GV E I+ LE F A   +  + 
Sbjct: 236 FKEALPLTGIVLTKLDGDSRGGAALSVRQITGAPIKFAGVSEKIDGLEVFDADRHAQRVL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|110802156|ref|YP_699002.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens SM101]
 gi|110682657|gb|ABG86027.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens SM101]
          Length = 304

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 121/299 (40%), Positives = 180/299 (60%), Gaps = 1/299 (0%)

Query: 14  IRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             KL  G   T   L + I + ++ +  +DD + EELE+ LI SDIG+    +I++ L  
Sbjct: 6   FDKLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTIEIIDRLKA 65

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K   + ++   ++    + +   +M        +  +   V+L++GVNGVGKTT IGK++
Sbjct: 66  KIRKEKINDVEMVKPALKEVIAEMMLEGDSEEEEEDNEKKVMLIIGVNGVGKTTSIGKIA 125

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +  + G KV+LAA DTFR+AAIDQL IW+ R + D V  + GSD AA+ ++A + A+A+
Sbjct: 126 ARNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKAR 185

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            VD+LI DTAGRLHN   LM  + K+ R++ R         L VLD TTGQNA+ Q + F
Sbjct: 186 DVDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQF 245

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                  G+I+TK+DGTA+GG +I I  T  IPV ++GVGEG+ DL+ F AK+F+  + 
Sbjct: 246 MEACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVEDLQKFNAKEFAEALL 304


>gi|18310697|ref|NP_562631.1| signal recognition particle-docking protein FtsY [Clostridium
           perfringens str. 13]
 gi|18145378|dbj|BAB81421.1| signal recognition particle protein [Clostridium perfringens str.
           13]
          Length = 304

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 121/299 (40%), Positives = 180/299 (60%), Gaps = 1/299 (0%)

Query: 14  IRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             KL  G   T   L + I + ++ +  +DD + EELE+ LI SDIG+    +I++ L  
Sbjct: 6   FDKLKTGLTKTRDNLTDKINEALNLAVTIDDDMYEELEEALIMSDIGMDTTIEIIDRLKA 65

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K   + ++   ++    + +   +M        +  +   V+L++GVNGVGKTT IGK++
Sbjct: 66  KIRKEKINDVEMVKPALKEVIAEMMLEGDYEEEEEDNEKKVMLIIGVNGVGKTTSIGKIA 125

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +  + G KV+LAA DTFR+AAIDQL IW+ R + D V  + GSD AA+ ++A + A+A+
Sbjct: 126 ARNKNNGKKVLLAAADTFRAAAIDQLDIWSQRANVDIVKHQEGSDPAAVVFDAVQAAKAR 185

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            VD+LI DTAGRLHN   LM  + K+ R++ R         L VLD TTGQNA+ Q + F
Sbjct: 186 DVDLLICDTAGRLHNKKNLMDELAKINRIIDRELGDRKKETLLVLDGTTGQNAVIQAKQF 245

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                  G+I+TK+DGTA+GG +I I  T  IPV ++GVGEG+ DL+ F AK+F+  + 
Sbjct: 246 MEACPIDGIILTKLDGTAKGGVVISIKNTLNIPVKYIGVGEGVEDLQKFNAKEFAEALL 304


>gi|332705391|ref|ZP_08425469.1| signal recognition particle-docking protein FtsY [Lyngbya majuscula
           3L]
 gi|332355751|gb|EGJ35213.1| signal recognition particle-docking protein FtsY [Lyngbya majuscula
           3L]
          Length = 639

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 103/315 (32%), Positives = 180/315 (57%), Gaps = 5/315 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S + ++ E +SW+++L +G   T   L   I  I+    L+     E+E LL+++D+G+ 
Sbjct: 323 SPEDISIEEISWLKQLRQGLGKTRRSLINQIKAIVGQGPLNQDAVMEIESLLLQADVGIE 382

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVV 117
               I++ L  K   + +  ++ +  + ++I  +L               +   ++ L+ 
Sbjct: 383 ATDYIIDTLQAKLREESLPAEKAIAYLKQIIRDLLEQPYSNNYSRIFAPENDTLNIWLMT 442

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT IGKL+     +G + ++AA DTFR+AA++Q+KIW +R+  + + +    +
Sbjct: 443 GVNGAGKTTTIGKLANLGQKSGYRCLIAAADTFRAAAVEQVKIWGERSGTEVIANPGKNT 502

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++    AQ++  ++L++DTAGRL N   LM  + K+ R++ +  P A    L V
Sbjct: 503 DPAAVVFDGISAAQSRNTELLLVDTAGRLQNKKNLMEELAKIRRIVAKKAPDAKVESLLV 562

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN LRQ ++F   A  +G+++TK+DG+A+GG  + +V    +P+ F+G GEGI 
Sbjct: 563 LDATLGQNGLRQAQVFSEAAKLSGVVLTKLDGSAKGGVALAVVRELGLPIRFIGAGEGIE 622

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF + +F   + 
Sbjct: 623 DLRPFSSYEFVEALL 637


>gi|325982102|ref|YP_004294504.1| signal recognition particle protein [Nitrosomonas sp. AL212]
 gi|325531621|gb|ADZ26342.1| signal recognition particle protein [Nitrosomonas sp. AL212]
          Length = 449

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 142/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   I  +    RL +        E+   L+ +D+ + V +  +  +  K   
Sbjct: 2   FDNLTHRLSGVIKTLRGEARLSENNIQDALREVRLALLEADVALPVVKDFIARIKEKAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + +  ++       N      P VIL+ G+ G GKTT  GKL
Sbjct: 62  HEVMTSLTPGQTLVGVVHQELIAIIGGEKADLNLATV-PPAVILMAGLQGAGKTTSSGKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +  +   KV+L + D +R AAI QL++ A++  ADF   + G     +   A   A+
Sbjct: 121 AKWLMENKKKKVLLVSCDIYRPAAIHQLELLANQVGADFFPVQEGQKPGEIGAAALDYAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRL  +  +M  I ++  +L       P   L V+DA  GQ+A+   +
Sbjct: 181 RHHHEVMIVDTAGRLGIDEAMMQEIRELETLL------RPIETLFVVDAMQGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK+DG ARGG  + +      P+ F G  E +  LE F     ++ I
Sbjct: 235 AFSDALPLTGVILTKLDGDARGGAALSVKHITGKPIKFAGTAEKLTGLEAFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|149198633|ref|ZP_01875677.1| signal recognition particle [Lentisphaera araneosa HTCC2155]
 gi|149138348|gb|EDM26757.1| signal recognition particle [Lentisphaera araneosa HTCC2155]
          Length = 469

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 145/308 (47%), Gaps = 16/308 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L+   ++T   +      ++S   + + + E++   L+ +D+      + V E+  
Sbjct: 1   MFNNLSDALSNTFKTITG--KSVLSENNIKEAM-EQVRLALLSADVHYDTVNEFVGEVSR 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +   + V       ++V+  V E + +++       N   S  P VI++VG++G GKTT 
Sbjct: 58  QCLGEKVLKSVKPSEQVVKVVHEELTRLMGTEEAEVNT--SGNPAVIMMVGLHGAGKTTT 115

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+    +   KV+LAA D +R AAIDQL+                 D   +A  A  
Sbjct: 116 CAKLAHFYKNQKKKVLLAACDVYRPAAIDQLEALGKDIQVPVFSDRSTPDVVQIAQNAMN 175

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+++  D++I+D AGRL  +  ++     +IRV +R +P     +L   D+  GQ A+ 
Sbjct: 176 TAKSEGHDLVILDMAGRLQIDEDMVQE---LIRVKERFNPG---EILLTADSALGQEAVS 229

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F      +G+++TK+DG ARGG  + +      P+ F+  GE ++DLE F  +  +
Sbjct: 230 VATHFDQALNISGIVLTKLDGDARGGAALSMRKVTGKPIKFITSGEKVSDLEKFRPEGMA 289

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 290 SRILGMGD 297


>gi|115522355|ref|YP_779266.1| signal recognition particle protein [Rhodopseudomonas palustris
           BisA53]
 gi|115516302|gb|ABJ04286.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Rhodopseudomonas palustris BisA53]
          Length = 510

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 141/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL   +  +     L +   +    E+   L+ +D+ + V +   E +  +   
Sbjct: 2   FDNLSEKLGGILDRLTGRGALSEADVDAAMREIRRALLEADVALEVVRSFTERVREQAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++ +   L    +  + +       I++VG+ G GKTT   KL
Sbjct: 62  ATVVKSVKPGQMVVKIVNDELIATLGSEVESIDLNAVAPVP-IMMVGLQGSGKTTTTAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++      KV++A+ D +R AA++QL +       D +   IG   + +A  A + A+
Sbjct: 121 ARRLTQRDKRKVLMASLDVYRPAAMEQLAVLGRDLEIDTLPIVIGQKPSQIASRALEAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGR   +  +MA   ++  V        PH VL V D+ TGQ+A+    
Sbjct: 181 LGGYDVLLLDTAGRTTLDDEMMAEAAEIKAVAN------PHEVLLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE  + LE F     ++ I
Sbjct: 235 AFDTKVGLTGIVLTRIDGDGRGGAALSMRAVTGKPIKLMGTGEKTDALEDFHPSRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|148655204|ref|YP_001275409.1| signal recognition particle-docking protein FtsY [Roseiflexus sp.
           RS-1]
 gi|148567314|gb|ABQ89459.1| signal recognition particle-docking protein FtsY [Roseiflexus sp.
           RS-1]
          Length = 326

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 110/300 (36%), Positives = 167/300 (55%), Gaps = 5/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +K+ +  A     L   I  +  +   + D + ++LE LLI++D+GV     +V     +
Sbjct: 26  QKIDQATAKARRGLFGQIASLFATDDPITDDLWDDLEALLIQADVGVETTMYLVNRTKDR 85

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
                V   R   D +   + ++L    +    D   RP++ILVVGVNG GKTT+I KL+
Sbjct: 86  CNRYGVKRAREARDMLKAEMVRVLQEQERQPQIDA--RPYIILVVGVNGAGKTTLIAKLA 143

Query: 133 KKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            ++ +  G +V+LAAGDTFR+AA +QL+ WA+R     +    G+D  A+ Y+A +    
Sbjct: 144 YRLKNQFGRRVLLAAGDTFRAAATEQLETWAERVGVPVISRGQGADPGAVVYDAIEAVSN 203

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VDVLIIDTAGRLH  + LM  + K+  +++R  P APH VL V+DATTGQN + Q + 
Sbjct: 204 GDVDVLIIDTAGRLHAKTNLMLELQKLRNIIRRRFPDAPHEVLLVIDATTGQNGVLQAKS 263

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      T + +TK+DGTA+GG    I    + P+ ++G GE + DL  F A+ F   + 
Sbjct: 264 FLKAVDVTHVAVTKLDGTAKGGIAFAIAQDIERPIRYIGTGEKMTDLALFDAETFVESLF 323


>gi|224541340|ref|ZP_03681879.1| hypothetical protein CATMIT_00500 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525777|gb|EEF94882.1| hypothetical protein CATMIT_00500 [Catenibacterium mitsuokai DSM
           15897]
          Length = 326

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 117/318 (36%), Positives = 181/318 (56%), Gaps = 22/318 (6%)

Query: 11  LSWIRKLTK---------------GFASTSLKLKEGITDIISS-RRLDDGVREELEDLLI 54
           + + +K+ +               G   +S      I  + +  R ++D   +ELE++LI
Sbjct: 1   MGFFQKIKETFVGKSTKQNEKYVAGLDKSSASFSSKINALAARYREINDEYFDELENILI 60

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE----LIHKMLMPLSKPFNWDFSHR 110
            SD+GV +  KIV+E+  +   +++     + D+      +I+     ++   N+  +  
Sbjct: 61  MSDVGVNMVMKIVDEIKKEVRLENIKDPHAINDIIVDKMFVIYANDSYMTTKINYAEND- 119

Query: 111 PHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
             VIL+VGVNG GKTT I KL+ K M + G KVM+AAGDTFR+ AI+QL  WA+R +   
Sbjct: 120 LTVILMVGVNGAGKTTTIAKLANKIMHEEGKKVMVAAGDTFRAGAIEQLAEWANRLNIPC 179

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V  + G D +++ ++A +QA+    DVLI DTAGRL N   LM  + KM R++KR+ P  
Sbjct: 180 VKGKEGGDPSSVIFDALEQAKEGGYDVLICDTAGRLQNKVNLMKELEKMNRIIKRVVPEG 239

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DATTGQN + Q   F  +   TG+++TKMDGTA+GG ++ I     IPV F+
Sbjct: 240 PQETLLVVDATTGQNGISQAVEFSKITDITGIVLTKMDGTAKGGIILSIKDMLNIPVKFI 299

Query: 290 GVGEGINDLEPFVAKDFS 307
           G+GE I+DL+ F  + + 
Sbjct: 300 GLGEKIDDLQEFDLEQYI 317


>gi|221065175|ref|ZP_03541280.1| signal recognition particle protein [Comamonas testosteroni KF-1]
 gi|220710198|gb|EED65566.1| signal recognition particle protein [Comamonas testosteroni KF-1]
          Length = 462

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ + KL   + ++    R+ +     +  E+   L+ +D+ + V +  +  +  K   +
Sbjct: 3   SALTDKLSRLVKEMRGQARITESNVQDMLREVRMALLEADVALPVVRDFIARVKEKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q ++  V++ +   +       N + +  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVISSLQPGQVLVSIVNKELAATMGEGVADINLN-AQPPAVILMAGLQGAGKTTTTAKLA 121

Query: 133 KKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +    KV+  +GD +R AAI+QLK    +  A++  S        +A  A   A+ 
Sbjct: 122 KHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAGAEWFPSTPDQKPHDIAVAAIDYAKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  + +LMA I  +   LK      P   L V+DA  GQ+A+   + 
Sbjct: 182 HFFDVLLVDTAGRLAIDELLMAEIKDLHATLK------PVETLFVVDAMQGQDAVNTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG +RGG  + +      P+ F GV E I+ LE F A   +  + 
Sbjct: 236 FKEALPLTGIVLTKLDGDSRGGAALSVRQITGAPIKFAGVSEKIDGLEVFDADRHAQRVL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|325283670|ref|YP_004256211.1| signal recognition particle-docking protein FtsY [Deinococcus
           proteolyticus MRP]
 gi|324315479|gb|ADY26594.1| signal recognition particle-docking protein FtsY [Deinococcus
           proteolyticus MRP]
          Length = 320

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 117/321 (36%), Positives = 176/321 (54%), Gaps = 27/321 (8%)

Query: 11  LSWIRKLTKGFASTSLKLKEGI----TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           ++W  +L  G   T  +L +       D+ S  R D+G  E+LE  L+ +D+G      I
Sbjct: 5   MTWADRLRGGLQKTRAQLNQNAGFLGRDLRSYTR-DEGALEDLEMALLAADVGGPATADI 63

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-----------FNWDFSHRP---- 111
           +  +   R         +L  +S+ + + L P  +            F       P    
Sbjct: 64  LRSVQASRR------PDLLAALSDALIEQLEPPKQEPAAGSNGLTPWFQPRVKPSPVEPA 117

Query: 112 -HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            HV++V+GVNGVGKTT I KL +   + G  VM  AGDTFR+AA  QL++W +R     V
Sbjct: 118 GHVVMVIGVNGVGKTTTIAKLGQHYMEHGKSVMFGAGDTFRAAAGAQLEVWGNRLGVPVV 177

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G D AA+A++A  + +A+  D+L++DTAGRLHN + LM  + K+ RV+ + D   P
Sbjct: 178 QGKEGGDPAAVAFDAADKRKARGTDLLLVDTAGRLHNQTNLMQELQKVHRVIGKADAGEP 237

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V  VLDA TGQN L+Q + F+     TG+++TK+DGTA+GG LIPIV    +P+ F+G
Sbjct: 238 AEVWMVLDAVTGQNGLQQAKKFNEAIALTGVVVTKLDGTAKGGILIPIVRELGVPIKFIG 297

Query: 291 VGEGINDLEPFVAKDFSAVIT 311
           VGE  +DL+PF A ++   + 
Sbjct: 298 VGEQADDLQPFNAAEYVEALL 318


>gi|17547530|ref|NP_520932.1| signal recognition particle protein [Ralstonia solanacearum
           GMI1000]
 gi|17429834|emb|CAD16518.1| probable gtp-binding signal recognition particle srp54, g-domain
           protein [Ralstonia solanacearum GMI1000]
          Length = 476

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 148/322 (45%), Gaps = 33/322 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   LDNLTQRLARVVKTMRGEARLTEANTAEMLREVRLALLEADVALPVVREFIARIKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLM----------------PLSKPFNWDFS-HRPHVI 114
           ++V       Q ++  V   +  ++                 P+ +    + +   P VI
Sbjct: 62  EEVITSLSPGQALVGIVQRELTAIIGGEEAVAPAPAGIPAGLPIGRAAELNLNVQPPAVI 121

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           L+ G+ G GKTT +GKL+K + +   K +   + D +R AAI QLK  +++  ADF  S+
Sbjct: 122 LMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFPSQ 181

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                  +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK          
Sbjct: 182 PEQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHATLKPA------ET 235

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+GV E
Sbjct: 236 LFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGAALSVRHITGKPIKFVGVAE 295

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
            ++ LEPF     +  I G  D
Sbjct: 296 KLDGLEPFYPDRMAQRILGMGD 317


>gi|331000256|ref|ZP_08323940.1| signal recognition particle protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329572422|gb|EGG54075.1| signal recognition particle protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 464

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 146/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S + +L + +  I    RL +     +  E+   L+ +D+ + V + ++  +  K   
Sbjct: 2   LDSLTQRLTKVVKTIRGQARLTESNMQDMLREIRIALLEADVAIPVVKDLIARIKEKALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
            +V       Q ++  V + + K++         + +     P +IL+ G+ G GKTT  
Sbjct: 62  TEVQTSLTPGQALVGIVHDELTKVIGGEDPENVREINLATQPPAIILLAGLQGAGKTTTA 121

Query: 129 GKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL K + +   K +   + D +R AAIDQL+  + + + DF  S        +A +A +
Sbjct: 122 GKLGKWLKEEKKKKVLTVSADVYRPAAIDQLQTVSQQANIDFFPSTPNEKPLDIARKALE 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLI+DTAGRL  +  +M  +  + + L       P     V+DA  GQ+A+ 
Sbjct: 182 YAKLHYYDVLIVDTAGRLAIDEQMMNEVSDLEKFLN------PIETFFVVDAMVGQDAVN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+I+TK+DG +RGG  + + +    P+ F+GVGE +N  + F  +  +
Sbjct: 236 TAKAFGEKLPLTGVILTKVDGDSRGGAALSVRMVTGKPIKFMGVGEKLNGFQRFDPQAMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 GRILGMGD 303


>gi|322695331|gb|EFY87141.1| signal recognition particle 54 kDa protein [Metarhizium acridum
           CQMa 102]
          Length = 522

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 144/306 (47%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   +T++   + LD    D + +E+   L+ +D+ V +  ++ + + +    
Sbjct: 3   LQDLGRRINAAVTNLTRDQNLDEKAFDNMLKEICSALLEADVNVKLVMQLRKSIKSTVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           KD+        + +      + +++ P ++PF      +P+VI+ VG+ G GKTT   KL
Sbjct: 63  KDLPPAVNKKRLIQKAVFDELVQLVDPHAEPFKPK-KGKPNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G +  L   DTFR+ A DQLK  A +    +  S   +D AA+A     Q + 
Sbjct: 122 ARHYQTRGFRACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAAVARAGVDQFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K DV+I+DT+GR    S L   +  +   +       P   + VLDA+ GQ A  Q + 
Sbjct: 182 EKFDVIIVDTSGRHRQESALFQEMIDIQTAI------RPDETIMVLDASIGQQAESQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK DG A GGG I  V     P+ F+G GE + DLE F  + F   + 
Sbjct: 236 FKEAADFGAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDLERFAPQQFVQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|320450462|ref|YP_004202558.1| signal recognition particle protein [Thermus scotoductus SA-01]
 gi|320150631|gb|ADW22009.1| signal recognition particle protein [Thermus scotoductus SA-01]
          Length = 434

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 144/304 (47%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA  + +L+E I  +    R+ +        E+   L+ +D+ + VA+  VE +  K   
Sbjct: 2   FAKLAGRLQEAIDRLRGRGRITEEDLKATLREIRRALMDADVNLEVARAFVESVREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       + VL  V E + + L    +   +      ++  +VG+ G GKTT   KL
Sbjct: 62  QKVLESLTPAEVVLATVYEALKEALGGEPR---FPTLKNQNLWFLVGLQGSGKTTTAAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL+I  ++     +  + G    ++     ++A+ 
Sbjct: 119 ALFYKGKGRRPLLVAADTQRPAAREQLRILGEKIGVPVLEVQDGESPESIRRRVEERARQ 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++++DTAGRL  +  LMA + ++   +       P  VL VLDA TGQ AL   + 
Sbjct: 179 EVRDLILVDTAGRLQIDEPLMAELARLKEAMN------PDEVLLVLDAMTGQEALSVAKA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGLI+TK+DG ARGG  +        P+YF GV E    LE F     ++ I 
Sbjct: 233 FDERVGVTGLILTKLDGDARGGAALSARHVTGKPIYFAGVSERPEGLELFYPDRLASRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|328955639|ref|YP_004372972.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Coriobacterium glomerans PW2]
 gi|328455963|gb|AEB07157.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Coriobacterium glomerans PW2]
          Length = 493

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L +    +    RL +        ++   L+ +D+   V +  V +   +   
Sbjct: 2   FNSLSERLNDTFDRLRGKGRLTEADIVSAMRDIRMALLEADVNFKVVRDFVAKTKERCST 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + + ++L           +  P+VI++VG+ G GKTT   KL
Sbjct: 62  SEVMDSLTPAQNVVKIVLDELTELLGSTESKLVLG-NRIPNVIMLVGLQGSGKTTAAVKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G   +LAA D +R AA DQL              +       +A  + ++A  
Sbjct: 121 AYLLKKQGRSPILAAADVYRPAAADQLSALGSEIEVPVFRGDGAD-PIEIARGSIREAVD 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRL  +  +M     + R +K      P  +L V+DA TGQ+ +  V  
Sbjct: 180 TMRDVVIVDTAGRLQIDEQMMQEAVDIKRAVK------PDQILMVVDAMTGQDIVNVVST 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G+I++K+DG ARGGG + I      P+ F+ +GE  + LE F     +  I 
Sbjct: 234 FAERTDFDGVIISKLDGDARGGGALSIRAVTGKPIKFVSMGEKPDSLEVFYPDRMAKRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|89098672|ref|ZP_01171554.1| Signal recognition particle, subunit Ffh/SRP54 [Bacillus sp. NRRL
           B-14911]
 gi|89086634|gb|EAR65753.1| Signal recognition particle, subunit Ffh/SRP54 [Bacillus sp. NRRL
           B-14911]
          Length = 449

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 150/306 (49%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  I  I    ++ +  V+E   E+   L+ +D+   V ++ V+++  +  
Sbjct: 2   AFEGLADRLQNTIQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKEFVKKVSERSI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V E + +++           +  P VI++VG+ G GKTT  GK
Sbjct: 62  GQEVLKSLTPGQQVIKVVKEELTELMGGEQSKVAVS-NRPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +        +L A D +R AAI QL+    + +              +A +A  +A
Sbjct: 121 LANLLRKKHNRNPLLVAADIYRPAAIKQLETLGKQINMPVFSLGDQVSPVEIARQAIAKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + ++  + K      P  +  V+DA TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHVDEALMDELKQIKELSK------PDEIFLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F+G+GE ++ +E F  +  ++ 
Sbjct: 235 QSFNEQLGLTGVVLTKLDGDTRGGAALSIRSVTSTPIKFVGLGEKMDAIEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|319407814|emb|CBI81465.1| signal recognition particle protein [Bartonella sp. 1-1C]
          Length = 515

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 141/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   ++++     L D        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FETLQERLGSILSNLTGRGVLSDKDITTALREIRRALLEADVALDVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +       Q V+  V + +  ML       +++ +  P VI++VG+ G GKTT   KL
Sbjct: 62  TAIVKSIKPGQMVVKIVHDELVHMLGGEGVLSDFN-APAPVVIMLVGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ D    KV++A+ DT R AA +QL+   ++     +          ++  A + A+
Sbjct: 121 AKRLIDKHNKKVLVASLDTRRPAAQEQLRQLGEQVQVPSLPIIPDQSPVDISARAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR H +  LM  + ++           P+ ++ V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRNHIDEALMLELKEIKAA------SQPYEIMLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+I+T+M+   RGG  + +      P+  +G GE ++ LE F     +  I
Sbjct: 235 SFDERIGITGIILTRMESDGRGGAALSMRAVTGKPIKAIGTGEKMDALEEFHPSRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|256827012|ref|YP_003150971.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Cryptobacterium curtum DSM 15641]
 gi|256583155|gb|ACU94289.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Cryptobacterium curtum DSM 15641]
          Length = 470

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 134/304 (44%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S S +L+     +    +L +   +    ++   L+ +D+   V +  V     +   
Sbjct: 2   LDSLSERLQGIFGGLRGKGKLTEEDIDAAMRDIRLALLEADVNYKVVKSFVARTKERCLT 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q V+  V + +  +L   S       S  P+VI++VG+ G GKTT   KL
Sbjct: 62  AEILDSLTPAQNVVKVVLDELTGLLGGDSPRLEL-TSRIPNVIMLVGLQGSGKTTAAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       +L A D +R AA DQL+   D         E G D  A+A E  + A  
Sbjct: 121 AYLLKKRNRNPLLVACDVYRPAAADQLQTLGDEIDVRVYRGE-GKDPVAIAREGVQDAID 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRLH +  +MA    +       D   P  +L V+DA TGQ+ +     
Sbjct: 180 HLRDVVIVDTAGRLHVDEDMMAEASAIK------DAVNPDQILMVVDAMTGQDVVNVAAA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G+IM+KMDG ARGGG + +      P+ F+  GE  + LE F     +  I 
Sbjct: 234 FAERVDFDGVIMSKMDGDARGGGALSVREVTGKPIKFISAGEKPDSLEEFHPDRLAKRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|221065349|ref|ZP_03541454.1| signal recognition particle-docking protein FtsY [Comamonas
           testosteroni KF-1]
 gi|220710372|gb|EED65740.1| signal recognition particle-docking protein FtsY [Comamonas
           testosteroni KF-1]
          Length = 392

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 126/311 (40%), Positives = 182/311 (58%), Gaps = 7/311 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  +  +   SW+ +L  G   T       I  + +  ++DD + EELED L+ +D GV 
Sbjct: 87  AKPQAPNSRQSWMERLKAGLRKT----GSSIATVFTGTQIDDRLYEELEDALLMADTGVK 142

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVN 120
             Q ++E+L  +      +    +  +       L+ PL KP      H P VI+V GVN
Sbjct: 143 ATQHLLEDLKRRVKETKTTEPAAVKALLADALTDLLRPLEKPLTIG-EHTPTVIMVAGVN 201

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+K ++D    V+LAA DTFR+AA +QL +WA+R + + + S+ G D AA
Sbjct: 202 GAGKTTSIGKLTKHLADGEQSVLLAAADTFRAAAREQLGVWANRNTVEII-SQDGGDPAA 260

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           ++++A    +A+K DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  
Sbjct: 261 VSFDAVSAGKARKKDVVLVDTAGRLPTQLHLMEELKKIKRVVSKADGTAPHEVLLVIDGN 320

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV  F      TGLI+TK+DGTA+GG L  I     +PVYF+GVGE I DLE 
Sbjct: 321 TGQNALTQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKIEDLET 380

Query: 301 FVAKDFSAVIT 311
           F A++F+  + 
Sbjct: 381 FSAREFAQALL 391


>gi|240137226|ref|YP_002961695.1| signal recognition particle protein, GTPase [Methylobacterium
           extorquens AM1]
 gi|240007192|gb|ACS38418.1| signal recognition particle protein, GTPase [Methylobacterium
           extorquens AM1]
          Length = 520

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L   ++ +     L +        E+   L+ +D+ + V +   +++  K   
Sbjct: 2   FEGLSDRLSGILSGLTRRGALTEADVTAAMREVRRALLEADVALEVVRSFTDKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++ +  ML   +   + + +  P  IL+VG+ G GKTT   K+
Sbjct: 62  AVVLKSVTPGQMVVKIVNDELIAMLGTDASVVDLN-APAPVAILMVGLQGSGKTTTTAKI 120

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++++    + +L A+ DT R AA++QL + A +   + +    G  A  +A  A + A+
Sbjct: 121 ARRLNQRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVESLPIVAGQSAVQIAKRAMEAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  LM    ++    K      PH VL V DA TGQ+A+    
Sbjct: 181 LGGFDVVMLDTAGRTTVDEGLMNEAAEVKAATK------PHEVLLVADALTGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG +RGG  + +      P+  +GVGE ++ LE F  +  +  I
Sbjct: 235 AFDERLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLVGVGEKVDALEEFHPQRVANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|16078661|ref|NP_389480.1| signal recognition particle-like (SRP) GTPase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309473|ref|ZP_03591320.1| signal recognition particle-like (SRP) component [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313798|ref|ZP_03595603.1| signal recognition particle-like (SRP) component [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318722|ref|ZP_03600016.1| signal recognition particle-like (SRP) component [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221322993|ref|ZP_03604287.1| signal recognition particle-like (SRP) component [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|321315364|ref|YP_004207651.1| signal recognition particle protein [Bacillus subtilis BSn5]
 gi|586037|sp|P37105|SRP54_BACSU RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|2309080|dbj|BAA21691.1| Ffh [Bacillus subtilis]
 gi|2633970|emb|CAB13471.1| signal recognition particle-like (SRP) GTPase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|320021638|gb|ADV96624.1| signal recognition particle protein [Bacillus subtilis BSn5]
          Length = 446

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ I+ I    ++ +     +  E+   L+ +D+   V +  V+++  +  
Sbjct: 2   AFEGLADRLQQTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++              P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVQEELTELMGGEESKIAV-AKRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D +I+DTAGRLH +  LM  +  +  +        P  +  V+D+ TGQ+A+   
Sbjct: 181 KEEHYDYVILDTAGRLHIDHELMDELTNVKEIAN------PEEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ LEPF  +  ++ 
Sbjct: 235 KSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAGLGEKLDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|226227753|ref|YP_002761859.1| signal recognition particle protein [Gemmatimonas aurantiaca T-27]
 gi|226090944|dbj|BAH39389.1| signal recognition particle protein [Gemmatimonas aurantiaca T-27]
          Length = 452

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 146/308 (47%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              +LT    +   KL+     +++   + DG+RE +  +L+ +D+  A+ ++ +E +  
Sbjct: 1   MFDELTDKLGNVFAKLRG--RGVLTESDIKDGMRE-VRRVLLEADVNFALTREFLERVEK 57

Query: 73  KRYA-----KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +        +    Q+++  V + +  ML    +      S  P V+++VG+ G GKTT 
Sbjct: 58  QAIGVLQLKQVQPAQQLVKIVHDELTAMLGERREGLKMS-SVPPTVVMMVGLQGSGKTTT 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL++K+        L A D +R AAIDQL+                 D   +A     
Sbjct: 117 AGKLARKLKLEAKTTRLVAADVYRPAAIDQLETLGKALDVPVYADRTTQDVVKIAKAGID 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           Q    +  V+I+DTAGRL  ++ +M  + ++   +K      P  +L V D  TGQ A++
Sbjct: 177 QGVRNRDRVVIVDTAGRLQIDADMMDELKRLKAAIK------PDEILFVADGMTGQEAVK 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+I+TK+DG ARGG  + I    K P+ ++GVGE  + LE F  +  +
Sbjct: 231 IAQGFNEALDITGVILTKLDGDARGGAALSIYGVLKKPIKYIGVGEKPDALEEFHPERMA 290

Query: 308 AVITGCLD 315
             I    D
Sbjct: 291 GRILQMGD 298


>gi|220922839|ref|YP_002498141.1| signal recognition particle protein [Methylobacterium nodulans ORS
           2060]
 gi|219947446|gb|ACL57838.1| signal recognition particle protein [Methylobacterium nodulans ORS
           2060]
          Length = 522

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L   ++ +     L +        E+   L+ +D+ + V +   E++  +   
Sbjct: 2   FEGLSERLSGILSGLTRRGALTEADVTAALREVRRALLEADVALEVVRTFTEKVREQAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++ +  ML   ++  + + +  P  IL+VG+ G GKTT   K+
Sbjct: 62  ATVLKSVTPGQMVVKIVNDQLVAMLGAEAEVIDLN-APSPVPILMVGLQGSGKTTTTAKI 120

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+++    + +L A+ DT R AA++QL +   +   + +    G  A  +A  A + A+
Sbjct: 121 AKRLTSRDRRRVLLASLDTRRPAAMEQLAVLGRQVGVETLPIVAGQSAVQIAKRAMEAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR+  +  LM     +           PH VL V DA TGQ+A+    
Sbjct: 181 LGGFDVVMLDTAGRITIDEGLMQEAADVKAATN------PHEVLLVADALTGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG ARGG  + +      P+  +G GE ++ LE F     +  I
Sbjct: 235 AFDQRLGVTGIVLTRMDGDARGGAALSMRAVTGKPIKLVGTGEKVDALEEFHPARVANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|300811725|ref|ZP_07092199.1| signal recognition particle-docking protein FtsY [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497301|gb|EFK32349.1| signal recognition particle-docking protein FtsY [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 432

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 103/295 (34%), Positives = 168/295 (56%), Gaps = 6/295 (2%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   ++      +   ++  R +D+   ++LE+LLI SD+G   ++++ ++L  +   +
Sbjct: 130 KGLEKSNKGFGARLNAFLAKFRTVDEDFFDDLEELLIESDVGYETSEELTDQLREEAKLQ 189

Query: 78  DVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
               +  L  V      E+  +     ++   +D + +P+V L VGVNG GKTT +GKL+
Sbjct: 190 KAKRRDDLKRVIVQKLVEVYDENANSENEKLAYDPNAKPNVYLFVGVNGAGKTTTVGKLA 249

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K+  D G KV+L A DTFR+ A++QL  W  RT    V     +D AA+ Y+  ++A A+
Sbjct: 250 KRFHDQGKKVLLVAADTFRAGAVEQLVEWGKRTGVPVVTGPDKADPAAVVYDGLERAIAE 309

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           + D L++DTAGRL N   LM  + K+ R +K+  P  P   L VLD +TGQNAL Q + F
Sbjct: 310 EADYLLVDTAGRLQNKVNLMNELEKIQRTIKKRLPDQPAETLLVLDGSTGQNALLQAKDF 369

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 +GL++TK+DG+++GG ++ I    K+PV  +G+GE   DL  F A +++
Sbjct: 370 DKTTKLSGLVLTKLDGSSKGGVVLSIRHEMKLPVKLVGLGEKAEDLADFDAANYA 424


>gi|325105803|ref|YP_004275457.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pedobacter
           saltans DSM 12145]
 gi|324974651|gb|ADY53635.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pedobacter
           saltans DSM 12145]
          Length = 448

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL+     +     + +       +E+   L+ +D+    A+   +E+  K   
Sbjct: 2   FDNLQEKLEGAFKVLKGQGSITEINVAETMKEIRKALLDADVNYKTAKSFTDEVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q +   +++ +  ++         D    P +IL+ G+NG GKTT  GKL
Sbjct: 62  QNVLTAISPGQLLTKVMNDELTLLMGGSVTEL--DLKQNPTIILIAGLNGAGKTTFTGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L AGD +R AAIDQL++ A +  A+   +    D  A+A E     +
Sbjct: 120 ANFLKTQKNKKPLLVAGDVYRPAAIDQLEVLAGQVGAEVYTNRESKDPVAIALEGIAHGK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRL  +  LM  I ++ +         P  +L V+DA TGQ+A+   +
Sbjct: 180 QNGNNVIIIDTAGRLTLDDALMDEIAEVKKATN------PQEILFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F     ++ I
Sbjct: 234 AFNDRLDFTGVVLTKLDGDTRGGAALSIKSVVNKPIKFVGTGEKMDALDVFYPDRMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|296330813|ref|ZP_06873288.1| signal recognition particle protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674331|ref|YP_003866003.1| signal recognition particle protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151818|gb|EFG92692.1| signal recognition particle protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412575|gb|ADM37694.1| signal recognition particle protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 446

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ I+ I    ++ +     +  E+   L+ +D+   V +  V+++  +  
Sbjct: 2   AFEGLADRLQQTISKIRGKGKVSEQDVKDMMREVRLALLEADVNFKVVKDFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++              P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVKEELTELMGGEESKIAV-AKKPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K ML A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D +I+DTAGRLH +  LM  +  +  +        P  +  V+D+ TGQ+A+   
Sbjct: 181 KEEHYDYVILDTAGRLHIDHELMDELTNVKEIAN------PEEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ LEPF  +  ++ 
Sbjct: 235 KSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAGLGEKLDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|190571642|ref|YP_001976000.1| signal recognition particle protein FtsY [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213019044|ref|ZP_03334851.1| signal recognition particle protein FtsY [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357914|emb|CAQ55375.1| signal recognition particle protein FtsY [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995153|gb|EEB55794.1| signal recognition particle protein FtsY [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 303

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 130/304 (42%), Positives = 192/304 (63%), Gaps = 3/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S    L +G   TS +   G+ +I S  ++LD  + ++LE+LLI  DIG   ++ ++++
Sbjct: 1   MSLFSNLYQGLLKTSSRFSGGVKNIFSGKKKLDQSLLDDLEELLISMDIGHKTSRLLIDK 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + ++  +V    +   +   I  +L P+ +P   +   +PH+I+V GVNG GKTT IG
Sbjct: 61  LASIKFESEVEHSVITQQLMSEIESILNPVVQPLILN--KKPHIIMVCGVNGNGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K  + G  VML A DTFR+AA +QL IWA+R+    V  E GSD+A++AY A  QA
Sbjct: 119 KLAYKYKEKGKSVMLVACDTFRAAASEQLNIWAERSDCSIVTGEHGSDSASVAYRAVNQA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
               VDV++IDTAGRL NN  LM  + K+ R +K+LD  APH V+ VLDATTGQNA  Q+
Sbjct: 179 IKDSVDVVLIDTAGRLQNNVNLMQELSKIHRTIKKLDDTAPHDVILVLDATTGQNAYSQL 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F  + G TGLI+TK+DGTA+GG +I +   +K+ ++ +G+GE I DL  F  K+F+  
Sbjct: 239 EAFSKMVGVTGLIVTKLDGTAKGGVVIGLAEAYKVKLHAIGIGESIEDLREFTGKEFAEA 298

Query: 310 ITGC 313
           +  C
Sbjct: 299 LFKC 302


>gi|190573787|ref|YP_001971632.1| putative cell division protein [Stenotrophomonas maltophilia K279a]
 gi|190011709|emb|CAQ45328.1| putative cell division protein [Stenotrophomonas maltophilia K279a]
          Length = 438

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 113/262 (43%), Positives = 161/262 (61%), Gaps = 1/262 (0%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
             LI +D+GV     +VE L  +  +++      +L  +   +  +L P++KP   D + 
Sbjct: 171 TALITADVGVGATTDLVEGLRKRMKSREFADANALLAALRAELIAILQPVAKPLVIDRNA 230

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P V+L VGVNGVGKTT IGKL+K+  D G  +MLAAGDTFR+AA+ QL+ W +R     
Sbjct: 231 KPFVVLTVGVNGVGKTTTIGKLAKRFKDEGHSLMLAAGDTFRAAAVAQLQAWGERNGVAV 290

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V     +DAA++A++A +  +A+   VLI DTAGRLH  S LM  +GK+ RVL ++D  A
Sbjct: 291 VAQGQNADAASVAFDALQAGKARGTSVLIADTAGRLHTQSGLMNELGKIRRVLGKIDATA 350

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH VL V+D TTGQNAL Q+  F+A    TGL++TK+DGTA+GG +  +     IP+ F 
Sbjct: 351 PHEVLMVIDGTTGQNALSQLRQFNAAVNVTGLVVTKLDGTAKGGVVFALAREFGIPIRFA 410

Query: 290 GVGEGINDLEPFVAKDFSAVIT 311
           G+GE   DL  F  + F   + 
Sbjct: 411 GIGERPEDLRVFDPEAFVDALL 432


>gi|320457371|dbj|BAJ67992.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 553

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 148/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +    ++  + 
Sbjct: 5   AAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERA 64

Query: 75  YAKDVSV-----QRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 65  LGTEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 123

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CS 172
           GKL   + ++G   +L A D  R  A+ QL++  +R                        
Sbjct: 124 GKLGYWLKESGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPG 183

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +   D   +A ++ + A+ K  D +IIDTAGRL  +  LM     +       D   P+ 
Sbjct: 184 QTSGDPVKVARDSIELARQKLYDTVIIDTAGRLGVDEELMRQARDI------RDAVQPNE 237

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A+R  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 238 ILFVIDAMIGQDAVRTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNG 297

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 298 EGLKDFEVFHPDRMASRILDMGD 320


>gi|16950584|gb|AAL32278.1| signal recognition particle protein subunit [Arcanobacterium
           pyogenes]
          Length = 513

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 149/307 (48%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S ++   + ++  + RL +     V  ++   L+ +D+ + V ++    +  K   
Sbjct: 2   FNSLSDRITGSLRNLRKAGRLSEKDVEAVISDIRRALLDADVALPVVRQFTAAVREKAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              S      Q+V+  V++ + ++L   ++  NW  S  P VI++ G+ G GKTT+ GKL
Sbjct: 62  AVASQALNPAQQVVKIVNDELIEVLGGQARELNW-ASAAPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + + + G + +L A D  R  A++QL++  ++   +    E G+   +   +A ++   
Sbjct: 121 GRWLRENGHRPLLVASDLQRPNAVNQLQVVGEQAGVEVFAPEPGNGVGNPVEVARDSILF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGRL  +  +MA    +       D   P  +L VLDA  GQ+A+  
Sbjct: 181 AKENTFDVVVVDTAGRLGVDEEMMAQARDI------RDAVNPDEILFVLDAMVGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G TG++++K+DG ARGG  + +      PV F   GE ++  E F     ++
Sbjct: 235 SIAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGQPVLFASTGEKLDAFERFHPDRMAS 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|118443987|ref|YP_878286.1| signal recognition particle protein [Clostridium novyi NT]
 gi|118134443|gb|ABK61487.1| signal recognition particle protein [Clostridium novyi NT]
          Length = 451

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 153/305 (50%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL++ +  +    +L +  +++ + +    L+ +D+   + ++ V+    K  
Sbjct: 2   AFEGLAEKLQDTLKKLRGKGKLSEKDIKQAMREVKLALLEADVNYKIVRQFVKTTGEKCL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V++ + +++        +  +    VI++VG+ G GKTT+ GK
Sbjct: 62  GEEVMKSLTPGQQVVKIVNDELKELMGSTESKIEFS-NKGLTVIMLVGLQGAGKTTMAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++     K +L A D +R AAI QL++   +                +A  + + A+
Sbjct: 121 LALQLRKNNKKPLLVACDIYRPAAIKQLQVVGKQIDVPVFSMGDKVSPVDIAKASIEHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRLH +  LM  +  +   ++      P+ +L V+D+ TGQ+A+   E
Sbjct: 181 NNNNNVVIIDTAGRLHIDEALMEELENIKGSVE------PNEILLVVDSMTGQDAVNVSE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + I      P+ ++G+GE +NDLE F     ++ I
Sbjct: 235 TFNNKLDITGVILTKLDGDTRGGAALSIKAVTGKPIKYVGLGEKMNDLEVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|310286866|ref|YP_003938124.1| Signal recognition particle, subunit FFH/SRP54 [Bifidobacterium
           bifidum S17]
 gi|309250802|gb|ADO52550.1| Signal recognition particle, subunit FFH/SRP54 [Bifidobacterium
           bifidum S17]
          Length = 548

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 146/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTARIRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 62  LGTEVSEALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CS 172
           GKL   + D+G   +L A D  R  A+ QL++  +                         
Sbjct: 121 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGEHAGVPVYAPEKGVQSDGGDSVSAPG 180

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E   D   +A ++   A+ K  D +IIDTAGRL  + +LM     +       D   P+ 
Sbjct: 181 ETSGDPVKVARDSIALAKQKLYDTVIIDTAGRLGVDEVLMQQARDI------RDAVNPNE 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 235 ILFVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTG 294

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 295 EGLKDFEVFHPDRMASRILDMGD 317


>gi|326776310|ref|ZP_08235575.1| signal recognition particle protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656643|gb|EGE41489.1| signal recognition particle protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 516

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 144/308 (46%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDTLSDRLSATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIANVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSQALNPAQQVVKIVNEELVAILGGETRRLRF-AKTAPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              +   G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 121 GLWLKGQGHSPLLVACDLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  D++I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 AKAKVHDIVIVDTAGRLGIDQELMRQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       + F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGKQIMFASNGEKLEDFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|257784653|ref|YP_003179870.1| signal recognition particle-docking protein FtsY [Atopobium
           parvulum DSM 20469]
 gi|257473160|gb|ACV51279.1| signal recognition particle-docking protein FtsY [Atopobium
           parvulum DSM 20469]
          Length = 301

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 101/305 (33%), Positives = 176/305 (57%), Gaps = 7/305 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + ++  L +G   +     E I++I      + +   ++LED L+  D+G  VA ++ ++
Sbjct: 1   MGFMDNLRRGLERSR----ETISEIFYMGGEVTEDFWDDLEDTLVMGDMGAEVAMRVTDD 56

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +   ++++    L     L+ ++           F+  P ++L VG+NG GKTT +G
Sbjct: 57  LRERAARENLTRSDQLR--RALVERLTAEFPVAKRDPFTDTPSIVLFVGINGAGKTTTVG 114

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++ +   +G+K ++   DTFR+AAI+QL++W +R+  + V  E G+D A++ +E  + A
Sbjct: 115 KIAGRAHASGVKTLIGGADTFRAAAIEQLQVWGERSGIEVVTRERGADPASVCFEVVETA 174

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  ++++IDTAGRLH +S LM  + K++ V ++     P SV+ V+DATTGQN L Q 
Sbjct: 175 AKQGTELVLIDTAGRLHTSSDLMRELAKVVSVTRKRAGDIPVSVVLVIDATTGQNGLNQA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+      GLI+TK+DGTA+GG  + I     +P+Y +GVGE I+DL+ F A+ F   
Sbjct: 235 KEFNDALSLDGLIVTKLDGTAKGGIALAISNQLNLPIYRIGVGESIDDLQTFDARSFCEA 294

Query: 310 ITGCL 314
           + G  
Sbjct: 295 LVGEG 299


>gi|229818302|ref|ZP_04448583.1| hypothetical protein BIFANG_03602 [Bifidobacterium angulatum DSM
           20098]
 gi|229784172|gb|EEP20286.1| hypothetical protein BIFANG_03602 [Bifidobacterium angulatum DSM
           20098]
          Length = 549

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLSGAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTASIRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 62  LGTEVSQSLNPAQQVVKIVNEELTSVLGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CS 172
           GKL   + D+G   +L A D  R  A+ QL++  +R                        
Sbjct: 121 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERADVPVYAPEKGVQADGGEAVMAPG 180

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +   D   +A +A + A+ K  D +IIDTAGRL  +  L      M +     D   P+ 
Sbjct: 181 QTTGDPVKVARDAVELAKQKLYDTVIIDTAGRLGVDEEL------MKQARDIRDAVQPNE 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 235 ILFVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTG 294

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 295 EGLKDFEVFHPDRMASRILDMGD 317


>gi|223986253|ref|ZP_03636268.1| hypothetical protein HOLDEFILI_03578 [Holdemania filiformis DSM
           12042]
 gi|223961779|gb|EEF66276.1| hypothetical protein HOLDEFILI_03578 [Holdemania filiformis DSM
           12042]
          Length = 323

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 167/307 (54%), Gaps = 15/307 (4%)

Query: 11  LSWIRKLT-------------KGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRS 56
           +S+   L               GF  TS  + + +  +      + +   EEL  +L+ S
Sbjct: 1   MSFFDTLKDKFSKKKDGDRYLSGFNKTSDTMGKKLNKMAFGFNGVTEDFLEELMIVLLES 60

Query: 57  DIGVAVAQKIVEELLTKR-YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           D+G+  A+KI ++L T     + V+ + V+  + E++  + +  +        + P VIL
Sbjct: 61  DVGIQTAEKICDQLKTTVDQYRYVTFKDVMAFLMEIMQNIYLESTDAPIVMNENGPTVIL 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VGVNG GKTT   KL+K     G KV + A DTFR+ AI+QL  WAD+     +     
Sbjct: 121 MVGVNGSGKTTTCAKLTKLYQSQGKKVGVVAADTFRAGAIEQLARWADKLGVPCIKGREN 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D +++  +  + A+   +D+L+ DTAGRL N   LM  + KM +V+ R    APH V  
Sbjct: 181 GDPSSVLVDGCRYAKEHNLDILLCDTAGRLQNKVNLMNELAKMRKVIGREIEGAPHHVWL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD+TTGQN L Q ++F  V   TG+I+TKMDGTA+GG ++ I     IPVY+LG+GE  
Sbjct: 241 VLDSTTGQNGLSQAKIFQEVTDVTGIILTKMDGTAKGGIVLAIKDVLHIPVYYLGLGERE 300

Query: 296 NDLEPFV 302
           +DL+PF 
Sbjct: 301 DDLKPFD 307


>gi|182435685|ref|YP_001823404.1| putative signal recognition particle protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178464201|dbj|BAG18721.1| putative signal recognition particle protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 516

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 144/308 (46%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDTLSDRLSATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIANVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSQALNPAQQVVKIVNEELVAILGGETRRLRF-AKTAPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              +   G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 121 GLWLKGQGHSPLLVACDLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  D++I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 AKAKVHDIVIVDTAGRLGIDQELMRQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       + F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGKQIMFASNGEKLEDFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|319646021|ref|ZP_08000251.1| signal recognition particle protein [Bacillus sp. BT1B_CT2]
 gi|317391771|gb|EFV72568.1| signal recognition particle protein [Bacillus sp. BT1B_CT2]
          Length = 451

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ I+ I    ++ +     +  E+   L+ +D+   V +  V+++  +  
Sbjct: 2   AFEGLADRLQQTISKIRGKGKVTEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++              P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVKEELTELMGGEESKI-AAAKRPPTVIMMVGLQGAGKTTSTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +        +L A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKHNRNPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDKVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + ++           P  +  V+D+ TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMDELEQVKET------AQPEEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+I+TK+DG  RGG  + I      P+ F G+GE ++ LEPF  +  ++ 
Sbjct: 235 KSFNEQLGVTGVILTKLDGDTRGGAALSIRAVTNTPIKFAGMGEKLDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|116074286|ref|ZP_01471548.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           RS9916]
 gi|116069591|gb|EAU75343.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           RS9916]
          Length = 550

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 174/312 (55%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V+ E + W+ +L +G   T      G+ D +    L   V ++LE LL+R+D GV    
Sbjct: 236 QVSLEEIDWLSRLRQGLEKTRQGFVTGLLDNLGDDPLTPEVVDDLEALLLRADAGVVATD 295

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVN 120
           +++E L  +   + V     +  + E +  +L    +    +       R ++ L+VGVN
Sbjct: 296 QVMEALRQRLNEEVVDPSEGIRFLKEQLRNLLEQPIQASGVELLAPERDRLNIWLMVGVN 355

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+     +G   M+AA DTFR+AA+ Q+++W +R+    V +   + D A
Sbjct: 356 GVGKTTTLGKLANLAVRSGYSAMIAAADTFRAAAVQQVEVWGERSDVPVVANPTANADPA 415

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A++K  D+L++DTAGRL     LM  + K+ R++ RL P +    L VLDA
Sbjct: 416 AVVFDAIGAARSKGTDLLLVDTAGRLQTKHNLMEELQKIRRIVDRLAPESKVESLLVLDA 475

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN L+Q   F   A  TG+++TK+DGTARGG  + +     +P+ F+G GEGI DL 
Sbjct: 476 SQGQNGLKQAMAFAKAADLTGVVITKLDGTARGGVALAVSSEAGLPIRFIGAGEGIRDLR 535

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 536 PFNSFEFVEALL 547


>gi|261749202|ref|YP_003256887.1| signal recognition particle-docking protein FtsY [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
 gi|261497294|gb|ACX83744.1| signal recognition particle-docking protein FtsY [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
          Length = 320

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 108/295 (36%), Positives = 172/295 (58%), Gaps = 7/295 (2%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK------ 73
              T       I  +     +LD    + +E++L+ SDIG     KI+  L  K      
Sbjct: 17  LKKTRESFFSRIKSLFFRKSKLDTDFIDHIEEILLSSDIGTETTIKIINNLEKKIQKEKY 76

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           R  +   + ++L +  E + K +             +P+VI++VGVNGVGKTT IGKL+ 
Sbjct: 77  RGGEIQKLYKLLKEEIEFLFKNIKNECLEQKIKEERKPYVIMMVGVNGVGKTTTIGKLAF 136

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            +   G  +++ A DTFR AAI+QL+IW++  +   +   + +D A++AY+  + AQ++K
Sbjct: 137 FLKKKGFNLIIGAADTFREAAINQLEIWSNTVNVPLIKQHMYADPASVAYDTLQSAQSRK 196

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           VDV++IDTAGRL N   LM  + K+ RV+K++   APH ++ VLDA+TGQNA  QV+ F 
Sbjct: 197 VDVVLIDTAGRLQNRIGLMEELAKISRVMKKVISKAPHEIMLVLDASTGQNAFEQVKKFI 256

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           +    + +I+TK++GTA+GG +I I+   ++P+ ++GVGE I DL+ F  K F  
Sbjct: 257 SFVKVSSIILTKLEGTAKGGVVIGIMDQFQVPIQYIGVGEKIQDLKEFNGKKFID 311


>gi|296283450|ref|ZP_06861448.1| signal recognition particle protein [Citromicrobium bathyomarinum
           JL354]
          Length = 495

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 153/310 (49%), Gaps = 22/310 (7%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +  VR+ + +    L+ +D+ + VA+  +E +  K   
Sbjct: 2   FDALSDRLGNTFDRLRGRGALREQDVRDAMREVRIALLEADVALPVARDFIERVTEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSK-----PFNWDFSHRPHVILVVGVNGVGKTT 126
           + V       Q+V+  V++ +  ML          P   D +  P VI++VG+ G GKTT
Sbjct: 62  EAVLKSVTPGQQVVKIVNDELVAMLGGSDSEDGHVPLTLD-AKPPVVIMMVGLQGSGKTT 120

Query: 127 VIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
              KL K + +  G K M+A+ D  R AA +QL +  ++   D +    G     +A  A
Sbjct: 121 STAKLGKLIREKHGKKAMMASLDVNRPAAQEQLAVLGEQAQVDTLPIVEGQQPVDIARRA 180

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+ + VDV+++DTAGRLH +  LMA +  +  V        P  VL V+D+ TGQ+A
Sbjct: 181 LESAKLRNVDVVLLDTAGRLHVDEALMAEMKAVASVAT------PTEVLLVVDSLTGQDA 234

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +   + F      TG+I+T+MDG ARGG  + +      P+ F GVGE ++ LE F  + 
Sbjct: 235 VNVAQSFSDEVPLTGVILTRMDGDARGGAALSMRAVTGKPIKFAGVGEKLDALEAFHPRR 294

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 295 VAERILGMGD 304


>gi|254510575|ref|ZP_05122642.1| signal recognition particle protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221534286|gb|EEE37274.1| signal recognition particle protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 500

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 151/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA++ V+++  +   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVAREFVKKVQEQATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +   L     P      + P  IL+VG+ G GKTT  GKL
Sbjct: 62  QAVTKSITPGQQVVKIVHDALVDTLRGEEDPGALKIDNPPAPILMVGLQGSGKTTTTGKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G KV++A+ D +R AA+DQL +   +   D +    G     +A  A +QA 
Sbjct: 122 AKRLKEKEGKKVLMASLDVYRPAAMDQLAVLGTQVGVDTLPIVPGQSPVDIAKRAKQQAT 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH + +LM  +    +V   +DP      L V+D  TGQ A+   E
Sbjct: 182 LGGYDVYMLDTAGRLHIDEVLMDEVE---QVRNAVDP---RETLLVVDGLTGQVAVEVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A  G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F     +  I
Sbjct: 236 EFDAKVGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPDRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|163781730|ref|ZP_02176730.1| signal recognition particle receptor protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882950|gb|EDP76454.1| signal recognition particle receptor protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 439

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 155/304 (50%), Gaps = 21/304 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               + K    ++ +  +R+L D        ++   L+ +D+   V ++ ++++  +  +
Sbjct: 2   LELLTEKFSGTLSKLKKARKLTDKVINDALRDIRLALLEADVDYEVTKRFLKKVRERALS 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       ++V+  V E +  +L    +        +   +L VG+ G GKTT IGKL
Sbjct: 62  SEVKKNLSPAEQVITIVYEELVNILGKEKEDL------KKGTVLFVGLQGTGKTTTIGKL 115

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G KV +++ D  R AA+ QL+  A+R    +   E G  A  LA +A ++A+ 
Sbjct: 116 AHLLKKKGFKVAVSSTDVRRPAAMLQLERLAERVGVPYYSFEEGLSAVELARKAVERAKR 175

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VD L++DTAGRLH +  LM  +  +   +K      P  ++ V DA  GQ AL   + 
Sbjct: 176 EGVDYLLLDTAGRLHVDEELMEELRSIKEEVK------PSEIIYVADAMQGQTALETAKT 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH + G TG+++TKMDG ARGG  + +  T  +P+ F+GVGE I DLEPF     +  I 
Sbjct: 230 FHELLGLTGVVLTKMDGDARGGLALSVRETLGVPIKFIGVGEKIEDLEPFYPDRVAQRIL 289

Query: 312 GCLD 315
           G  D
Sbjct: 290 GLGD 293


>gi|311746104|ref|ZP_07719889.1| signal recognition particle protein [Algoriphagus sp. PR1]
 gi|126576323|gb|EAZ80601.1| signal recognition particle protein [Algoriphagus sp. PR1]
          Length = 444

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 141/304 (46%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL      +  +  + +       +E+   LI +D+   VA+++ +++  +   
Sbjct: 2   FDNLSFKLDRAFKTLKGTGTITEINVATTVKEIRRALIDADVNYKVAKEVTDKIKQEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++    E + K++       N      P V+L+ G+ G GKTT  GKL
Sbjct: 62  RDVLISVSPGQLLVKITQEELTKLMGGTKVEINLSGD--PSVVLISGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G +V+L A D +R AAIDQLK+  ++   +        +A  +A  A   A+ 
Sbjct: 120 ASLLKKQGRQVLLVACDIYRPAAIDQLKVLGEQVGVEVYAEPENKNALEIANNAIAYAKK 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +I+DTAGRL  +  +M  I  + + L       P   L V+D+ TGQ+A+   + 
Sbjct: 180 SGKKTVIVDTAGRLAVDEQMMQEIEALKKALN------PSETLFVVDSMTGQDAVNTAKT 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G+++TK+DG  RGG  I I      P+ F+  GE + +++ F     S  I 
Sbjct: 234 FDERLDFNGVVLTKLDGDTRGGAAISIRHVVNKPIKFISTGEKMENIDVFHPDRMSQRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|83944907|ref|ZP_00957273.1| probable cell division protein [Oceanicaulis alexandrii HTCC2633]
 gi|83851689|gb|EAP89544.1| probable cell division protein [Oceanicaulis alexandrii HTCC2633]
          Length = 437

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 128/298 (42%), Positives = 195/298 (65%), Gaps = 1/298 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
              +   E   +  +L  G   +S +L +G++ + + R+LD    +ELE+LLI +DIG  
Sbjct: 125 PQPEPVEEKKGFFARLAAGLKKSSSRLSDGLSSLFTQRKLDQEALDELEELLIAADIGAP 184

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            A K+V  L   R+ KDVS   +   +++++ + L P  +P +   +  P V++ VGVNG
Sbjct: 185 TAAKVVARLAKDRFDKDVSDLEIREALADVVAETLQPYEQPLDMTGA-TPSVVVFVGVNG 243

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT +GK++ KM+  G  V+ AAGDTFR+AA++QL++W++R  A F+  E+G+DAA L
Sbjct: 244 SGKTTTLGKIAVKMTREGADVITAAGDTFRAAAVEQLQVWSERAGAKFLSRELGADAAGL 303

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A +Q + +K D ++IDTAGRL N + LM  + K+IRV++++D  APH VL VLD T 
Sbjct: 304 AYDAIQQGRTEKSDAVLIDTAGRLQNKAELMDELRKIIRVIRKIDDTAPHHVLLVLDGTV 363

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           G NA+ Q E F   A  TG+IMTK+DGTA+GG L+ +    K+P++F+GVGEG  DL+
Sbjct: 364 GSNAISQAEAFMETAHVTGVIMTKLDGTAKGGALVQVAERFKLPIHFIGVGEGEADLQ 421


>gi|15643336|ref|NP_228380.1| cell division protein FtsY [Thermotoga maritima MSB8]
 gi|170288167|ref|YP_001738405.1| signal recognition particle-docking protein FtsY [Thermotoga sp.
           RQ2]
 gi|4981086|gb|AAD35655.1|AE001731_12 cell division protein FtsY [Thermotoga maritima MSB8]
 gi|170175670|gb|ACB08722.1| signal recognition particle-docking protein FtsY [Thermotoga sp.
           RQ2]
          Length = 294

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 130/301 (43%), Positives = 175/301 (58%), Gaps = 9/301 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +     L KG   T       +  ++  ++LDD  REELE+LLI++D+GV   + I+E L
Sbjct: 1   MGLFDFLKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K           L  + E+I ++L       N      P VI+VVGVNG GKTT  GK
Sbjct: 61  EEK-------DGDALESLKEIILEIL-NFDTKLNVP-PEPPFVIMVVGVNGTGKTTSCGK 111

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K   D G  V+LAA DTFR+AAI+QLKIW +R  A  +    G+D AA+A++A   A 
Sbjct: 112 LAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHAL 171

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DV+IIDTAGRLH    LM  + K+ RV+K+  P APH  L V+DATTGQN L Q +
Sbjct: 172 ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAK 231

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F      TG+I+TK+DGTA+GG  + I     IP+ F+GVGE   DL PF  + F  V+
Sbjct: 232 IFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVL 291

Query: 311 T 311
            
Sbjct: 292 L 292


>gi|227530554|ref|ZP_03960603.1| signal recognition particle-docking protein FtsY [Lactobacillus
           vaginalis ATCC 49540]
 gi|227349560|gb|EEJ39851.1| signal recognition particle-docking protein FtsY [Lactobacillus
           vaginalis ATCC 49540]
          Length = 456

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 181/311 (58%), Gaps = 7/311 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           +++ V  ES +   K  +G   +       +   +++ R +D+   ++LEDLLI SD+G 
Sbjct: 137 TDETVDEESTA--AKYDQGLEKSRTGFGARLNRFLANFRHVDEDFFDDLEDLLIESDVGY 194

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDF---SHRPHVILV 116
            +A K+ +EL  +   ++   ++ + +V  E + ++     K    D       P VI+ 
Sbjct: 195 DMAMKLSDELREEVKLQNAKSKQDVSNVIIEKMVELYDEAGKDEKSDLNFAKEGPTVIMF 254

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT IGK++      G KV+LAA DTFR+ A +QL +WA R   D V      
Sbjct: 255 VGVNGAGKTTTIGKMAALFKSQGKKVLLAAADTFRAGATEQLDVWAKRDGVDIVTGPENG 314

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A ++A+ +  D+L +DTAGRL N   LM  + KM R+L R  P APH VL V
Sbjct: 315 DPAAVVFDAVQKAKKEDYDILFVDTAGRLQNKVNLMKELAKMKRILTREIPDAPHEVLLV 374

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL Q ++F      TG+++TK+DGTARGG ++ I     +PV ++G+GE +N
Sbjct: 375 LDATTGQNALNQAKLFKESTDVTGIVLTKLDGTARGGIVLAIRNELHLPVKYVGLGEKVN 434

Query: 297 DLEPFVAKDFS 307
           DL+ F A +F 
Sbjct: 435 DLQKFDASEFV 445


>gi|58386979|ref|XP_315212.2| AGAP004610-PA [Anopheles gambiae str. PEST]
 gi|55239546|gb|EAA10561.2| AGAP004610-PA [Anopheles gambiae str. PEST]
          Length = 504

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++ V +    E+   L+ +D+ + + +K+ E + +    
Sbjct: 3   LADLGRKITNALHSLSKATIINEEVLDSMLKEICTALLEADVNIRLVKKLRENVRSVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      RP+VI+ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQ-PIKGRPNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +  +  + 
Sbjct: 122 AYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVTIAQDGVEMFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  + +I+DT+GR      L   +  +   +       P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEFIIVDTSGRHKQEESLFEEMLAVANAVN------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKEKVDIGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKTKPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|330954981|gb|EGH55241.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae Cit 7]
          Length = 442

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 104/254 (40%), Positives = 158/254 (62%), Gaps = 2/254 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVA 63
           +  +  + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV   
Sbjct: 187 EPETGKVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEAT 246

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             I++ L  K   K ++  + LY  +   +  ML P+ +P      H+P VILVVGVNG 
Sbjct: 247 SVIIKSLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKAEHKPFVILVVGVNGA 306

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ 
Sbjct: 307 GKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVI 366

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A + A+A+ +DVLI DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TG
Sbjct: 367 FDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTG 426

Query: 243 QNALRQVEMFHAVA 256
           QNA+ Q + F+   
Sbjct: 427 QNAINQAKQFNQTV 440


>gi|289548587|ref|YP_003473575.1| signal recognition particle protein [Thermocrinis albus DSM 14484]
 gi|289182204|gb|ADC89448.1| signal recognition particle protein [Thermocrinis albus DSM 14484]
          Length = 437

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 152/304 (50%), Gaps = 21/304 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               + +  + +  + ++R+L +     +  ++   L+ +D+   V +  ++ +  +   
Sbjct: 2   LELLTDRFSKALERLRNTRKLTEKQLNDILRDIRMALLEADVDYDVVKTFLKRIRERALT 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +D+       + VL  V E + K+L    +        +   +L VG+ G GKTT +GKL
Sbjct: 62  EDLKNNLSPAESVLLTVYEELVKILGETKEDL------KKGTVLFVGLQGTGKTTTVGKL 115

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G KV L + D  R AAI QL+  A+R    +  +E   D   +A  A K+A+ 
Sbjct: 116 AYYLKGKGFKVALTSTDVRRPAAILQLQRLAERVEVPYYSAEGEEDPVKIAQIAVKRAKD 175

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VD L++DTAGRLH +  LM  + ++   +       P  +L V DA  GQ ALR  + 
Sbjct: 176 EGVDYLLLDTAGRLHIDEELMEELRRIKETVN------PSEILYVADAMQGQEALRAAKT 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG+++TKMDG ARGG  + +     +P+ F+GVGE + D+EPF     +  I 
Sbjct: 230 FHETVGLTGVVLTKMDGDARGGVALSVREALGVPIKFMGVGEKLEDIEPFYPDRVAQRIL 289

Query: 312 GCLD 315
           G  D
Sbjct: 290 GLGD 293


>gi|126734928|ref|ZP_01750674.1| signal recognition particle protein [Roseobacter sp. CCS2]
 gi|126715483|gb|EBA12348.1| signal recognition particle protein [Roseobacter sp. CCS2]
          Length = 501

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L DD V+  L +    L+ +D+ + VA+  ++ +  K   
Sbjct: 2   FENLSERLSGVFDKLTKQGALTDDDVKTALREVRVALLEADVSLPVARDFIKAVQEKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L     P      + P  IL+VG+ G GKTT   KL
Sbjct: 62  QAVTKSITPGQQVVKIVHDELQHVLTGDEDPGALKIDNPPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G +V++A+ DT R AA++QL I   +   D +    G D   +A  A  QA 
Sbjct: 122 AKRLKEKEGKRVLMASLDTNRPAAMEQLAILGGQIGVDTLPIVQGEDPVKIAKRAKTQAS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH +  L+A    +       D   P   L V+D  TGQ+A+   +
Sbjct: 182 LGGYDVYMLDTAGRLHIDQELIAQAAAV------RDVANPRETLLVVDGLTGQDAVNVAQ 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F  +  +  I
Sbjct: 236 EFDDKIGVSGVVLTRMDGDGRGGAALSMRAITGKPIRFVGLGEKMDAIETFEPERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|223986417|ref|ZP_03636422.1| hypothetical protein HOLDEFILI_03734 [Holdemania filiformis DSM
           12042]
 gi|223961613|gb|EEF66120.1| hypothetical protein HOLDEFILI_03734 [Holdemania filiformis DSM
           12042]
          Length = 462

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L +   +I    +L     D +  E+   L+ +D+   + +  + ++  K  
Sbjct: 2   AFESLTERLNKAFKNISGQGKLTEKNMDDMLREVRLALLEADVNYKIVKDFLVKVKDKAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q V+  V + +  +L       N+  S    V+++VG+ G GKTT +GK
Sbjct: 62  GQEVYTSLNPSQMVVKIVHDELVALLGEKEATLNFKESGM-TVVMMVGLQGTGKTTSVGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++  +        ML A D  R AAI+QL+       A+       +DA     +    A
Sbjct: 121 ITSLLKRKYNKHPMLIAADVIRPAAIEQLQTLGKEVGAEVFSLGTETDAVETVRQGLAHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D+++IDTAGRLH +  LM  + K+  + K      P  +L  +DA TGQ+ +   
Sbjct: 181 KEIGADIVLIDTAGRLHIDEALMEELAKIKEIAK------PDDILLTVDAMTGQDIINVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH     TGL++TK+DG +RGGG++ +    ++PV F+G+GE + DL+ F     +  
Sbjct: 235 QAFHEKLDVTGLVVTKLDGDSRGGGVLSVRSITQVPVKFIGLGEKMEDLDVFYPDRMADR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|282877590|ref|ZP_06286405.1| signal recognition particle protein [Prevotella buccalis ATCC
           35310]
 gi|281300162|gb|EFA92516.1| signal recognition particle protein [Prevotella buccalis ATCC
           35310]
          Length = 445

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L++    +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLEKSFKILKGEGKITEINVAETLKDVRRALLDADVNYKVAKSFTDRVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++    +        +P +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIVHDELAELMGG--EAVGLQLESKPAIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  L  A D +R AAI+QLK+   +   +        D  A+A +A +QA+
Sbjct: 120 ANLLKSKQRKNPLLVACDVYRPAAIEQLKVVGGQVGVEVYSEPDNKDVVAIAKQAIQQAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+IIDTAGRL  +  +M  I ++       D   P   L V+DA TGQ+A+   +
Sbjct: 180 AKGNDVVIIDTAGRLAVDEEMMDEIARLK------DAVHPDETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFNGVVLTKLDGDTRGGAALSIRTVVTKPIKFVGTGEKMEAIDVFHPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|94312025|ref|YP_585235.1| signal recognition particle subunit FFH/SRP54 (srp54) [Cupriavidus
           metallidurans CH34]
 gi|93355877|gb|ABF09966.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Cupriavidus metallidurans CH34]
          Length = 463

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 146/312 (46%), Gaps = 24/312 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   ++ +D+ + V ++ +  +  K   
Sbjct: 2   LDNLTQRLARVVKTMRGEARLTEANTAEMLREVRLAMLEADVALPVVREFIARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLM-------PLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +DV       Q ++  V   +  ++          S   N +    P VIL+ G+ G GK
Sbjct: 62  EDVVTSLTPGQALVGVVQRELTAVIGGDEAVADQKSNELNLNV-QPPAVILMAGLQGAGK 120

Query: 125 TTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT  GKL+K + +   K +   + D +R AAI QLK  +++   DF  S+       +A 
Sbjct: 121 TTTSGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGVDFFPSQPDQKPVEIAR 180

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A   A+    DVLI+DTAGRL  +  +M  I  +   LK          L V+DA  GQ
Sbjct: 181 AALDWARKHYHDVLIVDTAGRLGIDEAMMQEIAALHAELKPA------ETLFVVDAMLGQ 234

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A+   + F+     TG+++TK+DG ARGG  + +      P+ F+GVGE ++ LEPF A
Sbjct: 235 DAVNTAKAFNDALPLTGVVLTKLDGDARGGAALSVRHITGRPIKFVGVGEKLDGLEPFYA 294

Query: 304 KDFSAVITGCLD 315
              +  I G  D
Sbjct: 295 DRMAQRILGMGD 306


>gi|330813436|ref|YP_004357675.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486531|gb|AEA80936.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 302

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 190/302 (62%), Gaps = 2/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +++ L +G   +S  + EG+++I    + ++ + EE+ED +I+ D G+ VA K    L
Sbjct: 1   MGFLKNLKEGLFKSSSNISEGVSNIFLKSKPNEKILEEIEDFMIQCDFGIDVASKFKLIL 60

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K+++++   +   Y++ SE + K+L PL K      S    +I V GVNG GKTT IG
Sbjct: 61  ANKKFSEEELKKENFYNIFSEEVIKILQPLEKKIVNTESDFKTII-VCGVNGTGKTTTIG 119

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KLSK   +   KV++ A DTFR+AAIDQLK+W D+ + + + SE+G+D A++A++  + A
Sbjct: 120 KLSKLFKNHNKKVVVGAADTFRAAAIDQLKVWCDKNNTEMIQSEVGADPASVAFKTLEYA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D+ IIDTAGRL N   LM    K++RVLK++DP AP     VLDATTGQNA+ Q+
Sbjct: 180 KNNNKDLCIIDTAGRLQNKKNLMEEFAKIVRVLKKIDPDAPQETWIVLDATTGQNAITQI 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F  +   TG++MTK+DGTA+GG L+ I    KIP+  +GVGE   DL  F+A ++S  
Sbjct: 240 EEFQKITPLTGIVMTKLDGTAKGGILVAIADRFKIPIVAIGVGEKEEDLNQFIASEYSQA 299

Query: 310 IT 311
           + 
Sbjct: 300 LI 301


>gi|284032677|ref|YP_003382608.1| signal recognition particle-docking protein FtsY [Kribbella flavida
           DSM 17836]
 gi|283811970|gb|ADB33809.1| signal recognition particle-docking protein FtsY [Kribbella flavida
           DSM 17836]
          Length = 393

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 115/313 (36%), Positives = 180/313 (57%), Gaps = 4/313 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +   +    +   + +L    A +   L +G+  ++S  +LD+   E++E  LI +D+GV
Sbjct: 82  LPTLEKPESAQGRLVRLRAKLARSQSSLGKGLLALLSRDKLDEEAWEDIETTLITADVGV 141

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFSH-RPHVILVVG 118
              Q++VE L T+   + VS ++    + E +  ++ P L +    D    +P V++VVG
Sbjct: 142 TPTQELVERLRTRVRVEGVSGEQARAILREELITLVDPTLDRSLKVDRKDGKPAVVMVVG 201

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT +GKL++ +      V+L A DTFR+AA DQL+ W +R     V    G D 
Sbjct: 202 VNGTGKTTTVGKLARVLVAEDKHVVLGAADTFRAAAADQLQTWGERVGVRTVRGPEGGDP 261

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++A++A KQ   +  DV+++DTAGRLH    LM  +GK+ RV+++        VL V+D
Sbjct: 262 ASIAFDAVKQGIDESADVVLVDTAGRLHTKIGLMDELGKVKRVIEKTAE--VDEVLLVID 319

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q  +F  V   TGL++TK+DGTA+GG +I +     +PV  +G+GEG +DL
Sbjct: 320 ATTGQNGLTQARVFAEVINVTGLVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDL 379

Query: 299 EPFVAKDFSAVIT 311
            PF A+ F   + 
Sbjct: 380 APFEAEQFVDALL 392


>gi|300214421|gb|ADJ78837.1| Cell division protein [Lactobacillus salivarius CECT 5713]
          Length = 423

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 122/311 (39%), Positives = 179/311 (57%), Gaps = 6/311 (1%)

Query: 3   NQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           N KV  E S+   ++  KG   +       I  ++++ R +D+   EELE+ LI +D+G 
Sbjct: 101 NLKVEEEVSIDEEKRYDKGLEKSRKGFGAMINSLLANFRHVDEDFFEELEETLIEADVGF 160

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF---SHRPHVILV 116
             A KI +EL  +   ++   +  + D + E + ++     K  + +    S  P V L 
Sbjct: 161 ETAMKISDELRQEVKLRNAKKKNEISDAIIEKLVEIYENEGKEEDNNLHFSSEEPTVFLF 220

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ +    G KVMLAA DTFR+ AI+QL  W  R     V     S
Sbjct: 221 VGVNGVGKTTTIGKLAHRYKMEGKKVMLAAADTFRAGAIEQLAEWGRRVGVTVVKKVEKS 280

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A K+A+ +  D+L++DTAGRL N   LM  + K+ RV+ R  P APH VL  
Sbjct: 281 DPAAVVFDAVKKAKEEDYDILLVDTAGRLQNKVNLMKELEKIARVITREIPDAPHEVLLA 340

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNAL Q + F  V   TG+++TK+DGTA+GG ++ I     +PV  +G+GE ++
Sbjct: 341 LDATTGQNALTQAKQFKDVTNVTGIVLTKLDGTAKGGIVLAIRNELHLPVKLVGLGEKMD 400

Query: 297 DLEPFVAKDFS 307
           DL  F  +++ 
Sbjct: 401 DLRDFSPEEYV 411


>gi|241764099|ref|ZP_04762136.1| signal recognition particle protein [Acidovorax delafieldii 2AN]
 gi|241366563|gb|EER61051.1| signal recognition particle protein [Acidovorax delafieldii 2AN]
          Length = 458

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 144/304 (47%), Gaps = 17/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++ + KL   + ++    R+ +     +  E+   L+ +D+ + V +  +  +  K   +
Sbjct: 3   SALTDKLTRLVKEMRGQARITESNVQDMLREVRMALLEADVALPVVRDFIARVKDKALGQ 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q ++  V+  +   +       N   +  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVLGSLKPGQTLVSIVNRELAATMGEGVADINL-AAQPPAVILMAGLQGAGKTTTTAKLA 121

Query: 133 KKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           K + +    KV+  +GD +R AAI+QLK    +  A++  S        +A  A   A+ 
Sbjct: 122 KHLIEKRRKKVLTVSGDVYRPAAIEQLKTVTSQAGAEWFPSTPDQKPHDIAVAALDYARK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVL++DTAGRL  + +LM  I  +   L       P   L V+DA  GQ+A+   + 
Sbjct: 182 HYFDVLLVDTAGRLAIDEVLMQEIKDLHATLN------PVETLFVVDAMQGQDAINTAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+++TK+DG +RGG  + +      P+ F GV E ++ LE F A+  +  I 
Sbjct: 236 FKEALPLTGIVLTKLDGDSRGGAALSVRQITGAPIKFAGVSEKLDGLEVFDAERHAGRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|213691304|ref|YP_002321890.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522765|gb|ACJ51512.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 550

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 148/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +    ++  + 
Sbjct: 2   AAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERA 61

Query: 75  YAKDVSV-----QRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 62  LGTEVSDALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CS 172
           GKL   + ++G   +L A D  R  A+ QL++  +R                        
Sbjct: 121 GKLGYWLKESGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPG 180

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +   D   +A ++ + A+ K  D +IIDTAGRL  +  LM     +       D   P+ 
Sbjct: 181 QTSGDPVKVARDSIELARQKLYDTVIIDTAGRLGVDEELMRQARDI------RDAVQPNE 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A+R  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 235 ILFVIDAMIGQDAVRTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNG 294

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 295 EGLKDFEVFHPDRMASRILDMGD 317


>gi|118602610|ref|YP_903825.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567549|gb|ABL02354.1| signal recognition particle subunit FFH/SRP54 (srp54) [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 464

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 154/309 (49%), Gaps = 16/309 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT+   ++   L+    + +S   + + +RE +   L+ +D+ + V +  ++++ T
Sbjct: 1   MFDNLTERLQNSFKVLQG--KNKLSESNIKEAIRE-VRRALLEADVALEVIKVFLDQVQT 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K     V       Q  +  V   + +++   ++  +      P VI++ G+ G GKTT 
Sbjct: 58  KVLGLKVGQGLTPAQAFIKLVEIELTEIIGGEAESLDLKI-QPPAVIMLAGLQGAGKTTS 116

Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           I KL+  +      KV++ + D +R AAI+QL++ A +   +F  S I    + +   A 
Sbjct: 117 IAKLALYLKQRENKKVLVVSADVYRPAAIEQLEVLAKQVEVNFFPSTIDDKPSDIVASAK 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K AQ +  DVL++DTAGRLH +  +M  I  + + +       P   L V+D+ TGQ+A 
Sbjct: 177 KYAQKQFFDVLLVDTAGRLHIDEQMMDEIKVLQKKVN------PIETLFVVDSMTGQDAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F      TG+I+TK+DG ARGG  + +      P+ FLGVGE I+ LEPF  +  
Sbjct: 231 HTAKAFADALPLTGVILTKIDGDARGGAALSVRHITGKPIKFLGVGEKIDTLEPFHPERV 290

Query: 307 SAVITGCLD 315
            + + G  D
Sbjct: 291 VSRLLGMGD 299


>gi|120437132|ref|YP_862818.1| signal recognition particle protein [Gramella forsetii KT0803]
 gi|117579282|emb|CAL67751.1| signal recognition particle protein [Gramella forsetii KT0803]
          Length = 442

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL      +    ++ +       +E+   L+ +D+   +A++    +  +   
Sbjct: 2   FDNLSDKLDSAFHVLKGHGQITEINVAESLKEVRRALVDADVNYKIAKEFTNTVKERALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  V + + +++   ++  N      P VIL+ G+ G GKTT  GKL
Sbjct: 62  QDVLTTLKPGQLMVKLVKDELTELMGGEAEGINLSGD--PSVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +    K +L A D +R AAI+QL +  ++   +    E   D  A++ +A   A+
Sbjct: 120 ANFLKNKKTKKPLLVACDVYRPAAINQLHVVGEQVGVEVYSDEGNQDPVAISKDAIAYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRL  +  +M  I  +   ++      P   L V+D+ TGQ+A+   +
Sbjct: 180 ENGHNVVIIDTAGRLAVDEAMMTEISNIHEAIQ------PQETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+I+TK+DG  RGG  I I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 TFNERLNFDGVILTKLDGDTRGGAAISIKSVVNKPIKFIGTGEKMDAIDIFYPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|260219894|emb|CBA26882.1| Cell division protein ftsY homolog [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 308

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 129/306 (42%), Positives = 184/306 (60%), Gaps = 7/306 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
             E   W+ KL  G   T       I+ +    ++D+ + E+LE  L+ +D GVA  Q +
Sbjct: 8   PPERQKWLDKLKAGLGKT----ASSISGVFGGSQIDEALYEDLEGALLMADAGVAATQLL 63

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            + L  K  A  V+    L   +   + ++L PL KP      H P VI+V GVNG GKT
Sbjct: 64  TDALRKKVKATGVTHPTALKNILIAELTELLQPLQKPLVIG-EHTPTVIMVAGVNGAGKT 122

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K ++D+   V+LAA DTFR+AA +QL +WADR + + V S+ G D AA++Y++
Sbjct: 123 TSIGKLTKHLADSNASVLLAAADTFRAAAREQLTVWADRNTVEIV-SQEGGDPAAVSYDS 181

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
               +A+  DV++IDTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNA
Sbjct: 182 VTAGKARGKDVVLIDTAGRLPTQLHLMEELKKIKRVIGKADGTAPHEVLLVIDGNTGQNA 241

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + QV+ F    G TGLI+TK+DGTA+GG L  I     IPVYF+GVGE +++LE F A++
Sbjct: 242 VAQVKAFDDALGLTGLIVTKLDGTAKGGVLAAIARERPIPVYFIGVGEKLDELETFNARE 301

Query: 306 FSAVIT 311
           F+  + 
Sbjct: 302 FAQALL 307


>gi|251772246|gb|EES52816.1| Cell division protein (FtsY) [Leptospirillum ferrodiazotrophum]
          Length = 303

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 123/302 (40%), Positives = 181/302 (59%), Gaps = 3/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  K+ +G   T  K+   I  + + R  D G  +ELE++LI +D+G  V+++IVEEL
Sbjct: 1   MGFFDKIREGLQKTRDKVARSIESVFNRR--DPGFYQELEEILISADVGPVVSKEIVEEL 58

Query: 71  LT-KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              ++     +    L  +   +  +  P S       S  P V+L+VGVNGVGKTT  G
Sbjct: 59  KAWEKTNPGATADESLAHLESSLTAIFTPASPWEESSPSKSPMVVLLVGVNGVGKTTTAG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +  DAG  V+L A DTFR+AAI+QL+ W +R     V  + G+D A++A++  + A
Sbjct: 119 KLAARFRDAGNSVILGAADTFRAAAIEQLRKWGERLDIPVVHQKPGADPASVAFDTVRAA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ +D+ IIDTAGRL N   LM  + K+  ++ R  P +P  VL VLDAT GQNAL Q+
Sbjct: 179 RARGIDMAIIDTAGRLQNKQNLMNELRKIGAIIHREAPDSPVEVLLVLDATIGQNALSQL 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  +A  +GL++TK+DGT+RGG +I +   HKIPV F+GVGE  +DL PF    F   
Sbjct: 239 DEFVKIAPVSGLVLTKLDGTSRGGVVIALARRHKIPVRFIGVGEKTDDLLPFDPSTFVRS 298

Query: 310 IT 311
           I 
Sbjct: 299 IL 300


>gi|225874949|ref|YP_002756408.1| signal recognition particle-docking protein FtsY [Acidobacterium
           capsulatum ATCC 51196]
 gi|225794105|gb|ACO34195.1| signal recognition particle-docking protein FtsY [Acidobacterium
           capsulatum ATCC 51196]
          Length = 324

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 128/307 (41%), Positives = 186/307 (60%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKI 66
            E   +  ++ +  + T   L + I  +I+ +R +D+   EELE  LI SD+GV VA ++
Sbjct: 12  PEEKGFFDRMKQAVSRTRESLSDRIESVIAMTREVDEAALEELEMTLIASDLGVHVAAEV 71

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           V ++  +   + +     L D+ +  + K+L    KP     +  P VI++VGVNG GKT
Sbjct: 72  VGQIRDRAKREQIRDGAELRDLLKSSLKKILDEHQKPPRT-VATPPEVIVMVGVNGTGKT 130

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T  GKL+      G  V+L A DTFR+AAI+QL++W +RT  + + S  G D +A+ ++A
Sbjct: 131 TTTGKLAAYYRRQGKTVLLCAADTFRAAAIEQLEVWGERTGVELIKSRQGGDPSAVLFDA 190

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A++ DVLI+DTAGRLH  S LMA + KM R  +R  P APH VL VLDATTGQN 
Sbjct: 191 LQAAKARQTDVLIVDTAGRLHTKSGLMAELDKMRRTTQRFIPDAPHEVLLVLDATTGQNG 250

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L+Q  +F   AG TG+++TK+DGTA+GG  I I     +PV F G+GE +NDL PF +  
Sbjct: 251 LQQARLFTESAGVTGIVLTKLDGTAKGGIAIAIAREMGVPVRFAGIGEQVNDLLPFDSDA 310

Query: 306 FSAVITG 312
           F   + G
Sbjct: 311 FVEALLG 317


>gi|319952152|ref|YP_004163419.1| signal recognition particle subunit ffh/srp54 (srp54) [Cellulophaga
           algicola DSM 14237]
 gi|319420812|gb|ADV47921.1| signal recognition particle subunit FFH/SRP54 (srp54) [Cellulophaga
           algicola DSM 14237]
          Length = 445

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL + +  +    ++ +       +E+   L+ +D+   +A++    +  K   
Sbjct: 2   FDNLSEKLDKALHVLKGHGQITEINVAETLKEVRRALLDADVNFKIAKEFTNTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  V + +  ++    +  N      P VIL+ G+ G GKTT  GKL
Sbjct: 62  QDVLTALQPGQLMVKLVKDELTALMGGDVEGINLSGD--PSVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  +L A D +R AA+DQL +  ++   +       +D  A++      A+
Sbjct: 120 ASYLKTKKTKKPLLVACDVYRPAAVDQLLVVGEQIGVEVFSDRGNTDPVAISKAGIAYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   +V+IIDTAGRL  +  +M  I  + + ++      P   L V+DA TGQ+A+   +
Sbjct: 180 ANGHNVVIIDTAGRLAVDEEMMNEIANIHKAIQ------PQETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +    G+I+TK+DG  RGG  I I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 AFNDILNFDGVILTKLDGDTRGGAAISIKSVVNKPIKFIGTGEKMDAIDVFYPARMAERI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|55670465|pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
           From Thermotoga Maritima At 1.60 A Resolution
 gi|55670466|pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
           From Thermotoga Maritima At 1.60 A Resolution
          Length = 306

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 130/301 (43%), Positives = 175/301 (58%), Gaps = 9/301 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +     L KG   T       +  ++  ++LDD  REELE+LLI++D+GV   + I+E L
Sbjct: 13  MGLFDFLKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERL 72

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K           L  + E+I ++L       N      P VI+VVGVNG GKTT  GK
Sbjct: 73  EEK-------DGDALESLKEIILEIL-NFDTKLNVP-PEPPFVIMVVGVNGTGKTTSCGK 123

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K   D G  V+LAA DTFR+AAI+QLKIW +R  A  +    G+D AA+A++A   A 
Sbjct: 124 LAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHAL 183

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DV+IIDTAGRLH    LM  + K+ RV+K+  P APH  L V+DATTGQN L Q +
Sbjct: 184 ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAK 243

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F      TG+I+TK+DGTA+GG  + I     IP+ F+GVGE   DL PF  + F  V+
Sbjct: 244 IFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVL 303

Query: 311 T 311
            
Sbjct: 304 L 304


>gi|15606801|ref|NP_214181.1| signal recognition particle receptor protein [Aquifex aeolicus VF5]
 gi|6226155|sp|O67615|SRP54_AQUAE RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|2984037|gb|AAC07579.1| signal recognition particle receptor protein [Aquifex aeolicus VF5]
          Length = 454

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 149/304 (49%), Gaps = 21/304 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               + K    +  + ++R++ +        E+   L+ +D+   VA+  ++ +  K   
Sbjct: 2   LELLTEKFSHALEKLTNARKITEKNINQTLREIRLALLEADVDYQVAKDFIKRIREKVVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K+V       + V+  V E +  +L             +   +L VG+ G GKTT IGK+
Sbjct: 62  KEVPKNLSPAEFVIKTVYEELVDILGGE------KADLKKGTVLFVGLQGTGKTTTIGKI 115

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G KV +++ D  R AA+ QL+  A+R    +   E G  A  +A  A K+A+ 
Sbjct: 116 ANLLKKGGHKVAVSSTDLRRPAAMLQLQRLAERVGVPYYEFEEGLGAVEIARRAVKRAKE 175

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VD L++DTAGRLH +  LM  + ++  V        P  +L V DA  GQ AL   + 
Sbjct: 176 ESVDYLLLDTAGRLHVDEELMKELQEIKEVTN------PSEILYVADAMQGQTALETAKT 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG+++TKMDG ARGG  + +     +P+ F+GVGE I D+EPF     +  I 
Sbjct: 230 FHERLGLTGVVITKMDGDARGGLALSVKEVLGVPIKFIGVGEKIEDIEPFYPDRIAQRIL 289

Query: 312 GCLD 315
           G  D
Sbjct: 290 GLGD 293


>gi|322418395|ref|YP_004197618.1| signal recognition particle-docking protein FtsY [Geobacter sp.
           M18]
 gi|320124782|gb|ADW12342.1| signal recognition particle-docking protein FtsY [Geobacter sp.
           M18]
          Length = 403

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 118/306 (38%), Positives = 174/306 (56%), Gaps = 3/306 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               +   +L +  + T   +   +  ++   +++D    EELE++LI +D+GV     +
Sbjct: 98  QAKPNLFERLKRSLSKTHETIIGRVDTLLLGKKQIDTDTLEELEEILITADLGVKTTVDL 157

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +  L  +    ++     L   + E I   LM    P       +P VILV+GVNGVGKT
Sbjct: 158 IRTLEQRLKRDELQDGAALKRALKEEIQLRLMEHHAPLVV-TDKKPFVILVIGVNGVGKT 216

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ + +  G KV+LAA DTFR+AA +QL++WA R   D V  + G+D +A+ ++A
Sbjct: 217 TTIGKLAARYAGEGKKVLLAAADTFRAAAAEQLELWAKRVGTDIVRHKEGADPSAVVFDA 276

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K A A+  DVLIIDTAGR+H    LM  + K+ RVL R  P  PH  L VLDA TGQNA
Sbjct: 277 CKAAIARGTDVLIIDTAGRMHTKVNLMEEMKKIRRVLTREIPDGPHETLLVLDAATGQNA 336

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q ++F   A  TG+++TK+DG+A+GG ++ +     +PV F+GVGE + DL  F    
Sbjct: 337 LSQAKLFKEAASVTGVVLTKLDGSAKGGIVVAVSHEFALPVRFIGVGESVEDLRAFDPAQ 396

Query: 306 FSAVIT 311
           F   + 
Sbjct: 397 FVEALF 402


>gi|117928774|ref|YP_873325.1| signal recognition particle-docking protein FtsY [Acidothermus
           cellulolyticus 11B]
 gi|117649237|gb|ABK53339.1| signal recognition particle-docking protein FtsY [Acidothermus
           cellulolyticus 11B]
          Length = 413

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 119/300 (39%), Positives = 174/300 (58%), Gaps = 5/300 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +L    A +   L  G+  ++S  RLDD   +E+EDLL+ +D+GVA   ++VE L T+  
Sbjct: 108 RLRSRLARSESVLGRGLFALLSRERLDDATWQEIEDLLLTADVGVAATTELVERLRTEAK 167

Query: 76  AKDVSVQRVLYDV--SELIHKMLMPLSKPF-NWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              V     +  +    L+  +   L +       +  P V+LVVGVNG GKTT +GKL+
Sbjct: 168 VMGVRSPDDVRAMLRRSLLDTVDAGLDRSLATTRTAAGPAVVLVVGVNGTGKTTTVGKLA 227

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           + +   G  V+L A DTFR+AA DQL+ W  R     V     +D A++A++A + A  +
Sbjct: 228 RLLVADGRSVVLGAADTFRAAAADQLETWGRRVGVPVVRGAERADPASVAFDAVRVAIEQ 287

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           + DV++IDTAGRLH  + LM  +GK+ RV++R  P +   VL VLDATTGQN L Q  +F
Sbjct: 288 EADVVVIDTAGRLHTKTGLMDELGKVKRVVERRCPVS--EVLLVLDATTGQNGLTQARVF 345

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             V   TG+++TK+DGTA+GG +I +     IPV  +G+GEG +DL PF    F   + G
Sbjct: 346 TDVVAVTGVVLTKLDGTAKGGIVISVQRELGIPVKLVGLGEGPDDLAPFDPAAFVDALLG 405


>gi|320334177|ref|YP_004170888.1| signal recognition particle-docking protein FtsY [Deinococcus
           maricopensis DSM 21211]
 gi|319755466|gb|ADV67223.1| signal recognition particle-docking protein FtsY [Deinococcus
           maricopensis DSM 21211]
          Length = 319

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 114/314 (36%), Positives = 169/314 (53%), Gaps = 16/314 (5%)

Query: 11  LSWIRKLTKGFASTSLKLKEG-------ITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +SW  +L  G + T  +L          + D+ ++R       E+LE  LI +D+G A  
Sbjct: 1   MSWFDRLRDGLSKTRQQLNTSVGFLGTDLKDVFTNRL---DTLEDLEYALIAADVGRAAT 57

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV------ILVV 117
           ++I+E++                 +            K      + R  V      I+++
Sbjct: 58  EEILEDIKNSGKTNLQEALMDAMTLQLEPDAKRAQFRKLGFTPDARRSTVQPEGRVIMMI 117

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT I KL +     G  VM AAGDTFR+AA  QL +W +R     V    G D
Sbjct: 118 GVNGVGKTTTIAKLGQYYGSRGQSVMFAAGDTFRAAAGAQLGVWGERLGIPVVQGPDGGD 177

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+A++A +  +A+  D+L +DTAGRLHN   LM  + K+ RV+ + DP  P  V  VL
Sbjct: 178 PAAVAFDAAQARRARGTDLLFVDTAGRLHNKHNLMEELKKVRRVIDKADPGEPAEVWLVL 237

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN L+Q + FH   G TG+++TK+DGTA+GG ++PIV    +P+ F+GVGE  +D
Sbjct: 238 DAVTGQNGLQQAKKFHESIGLTGVVVTKLDGTAKGGIVVPIVRELGVPIKFIGVGESADD 297

Query: 298 LEPFVAKDFSAVIT 311
           L+PF +++F   + 
Sbjct: 298 LQPFDSREFVRALF 311


>gi|291448077|ref|ZP_06587467.1| signal recognition particle protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351024|gb|EFE77928.1| signal recognition particle protein [Streptomyces roseosporus NRRL
           15998]
          Length = 517

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 144/308 (46%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L     ++    RL +   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FDTLSDRLSATFKNLRGKGRLSEADIDATAREIRIALLEADVALPVVRAFIANVKERARG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  VEVSQALNPAQQVVKIVNEELVAILGGETRRLRF-AKTAPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
              +   G   +L A D  R  A++QL + A+R        E G+   D   +A ++ + 
Sbjct: 121 GLWLKGQGHSPLLVACDLQRPNAVNQLSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+AK  D++I+DTAGRL  +  LM     +       D  +P  +L V+DA  GQ+A+  
Sbjct: 181 AKAKVHDIVIVDTAGRLGIDQELMQQAADI------RDAVSPDEILFVVDAMIGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G  G++++K+DG ARGG  + I       V F   GE + D + F     ++
Sbjct: 235 AEAFRDGVGFDGVVLSKLDGDARGGAALSIAHVTGKQVMFASNGEKLEDFDAFHPDRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|291459097|ref|ZP_06598487.1| signal recognition particle-docking protein FtsY [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418351|gb|EFE92070.1| signal recognition particle-docking protein FtsY [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 291

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 117/287 (40%), Positives = 165/287 (57%), Gaps = 6/287 (2%)

Query: 28  LKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
             + + +I SS  + DD   EELED +I SD+G   A +I++ +  +   K  ++     
Sbjct: 5   FSKLLNNIFSSSEVADDSFYEELEDAMIMSDVGADAALRIIDAVRREAKRKGCNLT---K 61

Query: 87  DVSELIHKMLMPLSKPFN--WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           DV +++   L  L +     ++F  +  +I V+GVNGVGKTT IGKL++     G KV+L
Sbjct: 62  DVRKILKDYLYELMRTDESYYEFERQKSIISVIGVNGVGKTTSIGKLAEHFKSMGKKVIL 121

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+ AI+QL  W  R   D +    GSD AA+ ++A +  +AK  D+LIIDTAGR
Sbjct: 122 AAADTFRAGAIEQLVEWGKRVGVDVIRQREGSDPAAVVFDALQSFKAKNADILIIDTAGR 181

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LHN   LM  +GK+ R++ R         L VLDATTGQNAL Q  +F   +  TG+I+T
Sbjct: 182 LHNKKNLMQELGKINRIIDREFSEGFRETLVVLDATTGQNALSQARVFQETSQVTGIILT 241

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           KMDG+ARGG  + +     IPV ++G GE   DL  F A  +   I 
Sbjct: 242 KMDGSARGGVALSVQSELGIPVKYIGSGERAKDLHRFDAGSYVDSIF 288


>gi|262037316|ref|ZP_06010787.1| signal recognition particle protein [Leptotrichia goodfellowii
           F0264]
 gi|261748664|gb|EEY36032.1| signal recognition particle protein [Leptotrichia goodfellowii
           F0264]
          Length = 445

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-VREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   + K+    +    +L +  ++E L +    L+ +D+   VA+  V ++  K   
Sbjct: 2   FNSLGDRFKDIFKKVSGQGKLTEANIKEALREVRLALLEADVNYGVAKNFVAKIRDKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V + + ++L   +          P ++++ G+ G GKTT  GKL
Sbjct: 62  EEVIKGVNPTQQFIKIVHDELVEVLGGTNVLIAKS-PKAPTIVMLSGLQGAGKTTFAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           SK +   G    L   D +R AA  QLK+ A++        +  +D   +  +  ++A+ 
Sbjct: 121 SKHLKSKGESPFLIGADVYRPAAKKQLKVLAEQVKVPSFTIDESTDVIEICKKGIEEAKN 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +IIDTAGRLH +  LM  +  +           PH +L V+D  TGQ+A+   + 
Sbjct: 181 AHATYVIIDTAGRLHVDEQLMEELQNIKSTFN------PHEILLVVDGMTGQDAVNVAKT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TG+++TK+DG  RGG  + +      P+ F+  GE ++D+ PF     ++ I 
Sbjct: 235 FNDRLDITGVVLTKLDGDTRGGAALSVKEVAGKPIKFISEGEKLDDIAPFHPDRLASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|218528696|ref|YP_002419512.1| signal recognition particle protein [Methylobacterium
           chloromethanicum CM4]
 gi|218520999|gb|ACK81584.1| signal recognition particle protein [Methylobacterium
           chloromethanicum CM4]
          Length = 520

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L   ++ +     L +        E+   L+ +D+ + V +   +++  K   
Sbjct: 2   FEGLSDRLSGILSGLTRRGALTEADVTAAMREVRRALLEADVALEVVRSFTDKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++ +  ML   +   + + +  P  IL+VG+ G GKTT   K+
Sbjct: 62  AVVLKSVTPGQMVVKIVNDELIAMLGTDASVVDLN-APAPVAILMVGLQGSGKTTTTAKI 120

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++++    + +L A+ DT R AA++QL + A +   + +    G  A  +A  A + A+
Sbjct: 121 ARRLNQRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVESLPIVAGQSAVQIAKRAMEAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  LM    ++    K      PH VL V DA TGQ+A+    
Sbjct: 181 LGGFDVVMLDTAGRTTVDEGLMNEAAEVKAATK------PHEVLLVADALTGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG +RGG  + +      P+  +GVGE ++ LE F  +  +  I
Sbjct: 235 AFDERLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLVGVGEKVDALEEFHPQRVANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|300854472|ref|YP_003779456.1| putative cell division protein [Clostridium ljungdahlii DSM 13528]
 gi|300434587|gb|ADK14354.1| predicted cell division protein [Clostridium ljungdahlii DSM 13528]
          Length = 303

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 130/303 (42%), Positives = 192/303 (63%), Gaps = 4/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             +  KL  G   T   L   I+D+++S   +DD + EELE++LI +DIGV     I+++
Sbjct: 3   KGFFDKLKNGLEKTKSNLTGKISDMLTSAVSIDDDLYEELEEILITADIGVETTTYIIDK 62

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   + +    ++   + E+I  +L    +  + +    P +ILV+GVNGVGKTT I
Sbjct: 63  LKEKIKEQKIKDPSLINQCLKEVIIDILGD--EKNSIEPEKTPEIILVIGVNGVGKTTSI 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK+S K+ D+G KV++AA DTFR+AAIDQL++W+ R   D +  + GSD AA+ ++A + 
Sbjct: 121 GKMSSKLKDSGNKVIMAAADTFRAAAIDQLEVWSRRAGVDIIKHQEGSDPAAVIFDAIQA 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+K +VLI DTAGRLHN   LM  + K+ RV++R    A    L VLDATTGQNA++Q
Sbjct: 181 AKARKAEVLICDTAGRLHNKKNLMDELSKINRVIEREYKEAFKQTLLVLDATTGQNAVQQ 240

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F  V    G+I+TK+DGTA+GG +I I  +  IPV  +GVGEGI+DL+ F ++DF  
Sbjct: 241 AKQFTEVCPIDGIILTKLDGTAKGGIVISIKHSLDIPVKLIGVGEGIDDLQEFCSRDFVE 300

Query: 309 VIT 311
            + 
Sbjct: 301 ALF 303


>gi|255037358|ref|YP_003087979.1| signal recognition particle-docking protein FtsY [Dyadobacter
           fermentans DSM 18053]
 gi|254950114|gb|ACT94814.1| signal recognition particle-docking protein FtsY [Dyadobacter
           fermentans DSM 18053]
          Length = 320

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 178/312 (57%), Gaps = 12/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
            +  K     L KG   T       ++  I+    +D+ V +ELED+L+ SD+GV    K
Sbjct: 5   GFFSKEKKETLDKGLEKTKDSFFGKLSRAIVGKTTIDEDVLDELEDILVSSDVGVETTVK 64

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSHRPHVILVVGV 119
           +++ +  +    K  S   +   + E I  +L       +   F  +   +P V++VVGV
Sbjct: 65  VIKRIEERVARDKYASTAELDSILREEIAALLTENKSVDIRDSFETEHLPKPFVMMVVGV 124

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KV+L A DTFR+AA+DQLK+W  R +   +   + +D +
Sbjct: 125 NGVGKTTTIGKLAHQFHQRGHKVVLGAADTFRAAAVDQLKLWGQRVNVPVIDHGMNTDPS 184

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+AY+A K+      DV+IIDTAGRLH    LM  + K+ RV++++ P APH VL VLD 
Sbjct: 185 AVAYDAIKKGVESNADVIIIDTAGRLHTKVNLMNELSKIKRVMQKILPDAPHEVLLVLDG 244

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNA+ Q   F  V   T L +TK+DGTA+GG +I I    KIPV ++GVGE ++DL+
Sbjct: 245 STGQNAVIQAREFTKVTDITALAITKLDGTAKGGVVIGISDEFKIPVKYIGVGEKMDDLQ 304

Query: 300 PFVAKDFSAVIT 311
            F   +F   + 
Sbjct: 305 VFDRAEFVDSLF 316


>gi|227890691|ref|ZP_04008496.1| signal recognition particle-docking protein FtsY [Lactobacillus
           salivarius ATCC 11741]
 gi|227867629|gb|EEJ75050.1| signal recognition particle-docking protein FtsY [Lactobacillus
           salivarius ATCC 11741]
          Length = 423

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 117/297 (39%), Positives = 172/297 (57%), Gaps = 5/297 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +  KG   +       I  ++++ R +D+   EELE+ LI +D+G   A KI +EL  + 
Sbjct: 115 RYDKGLEKSRKGFGAMINSLLANFRHVDEDFFEELEETLIEADVGFETAMKISDELRQEV 174

Query: 75  YAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGK 130
             ++   +  + D + E + ++     K  + +    S  P V L VGVNGVGKTT IGK
Sbjct: 175 KLRNAKKKNEISDAIIEKLVEIYENEGKEEDNNLHFSSEGPTVFLFVGVNGVGKTTTIGK 234

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    G KVMLAA DTFR+ AI+QL  W  R     V     SD AA+ ++A K+A+
Sbjct: 235 LAHRYKMEGKKVMLAAADTFRAGAIEQLAEWGRRVGVTVVKKVEKSDPAAVVFDAVKKAK 294

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D+L++DTAGRL N   LM  + K+ RV+ R  P APH VL  LDATTGQNAL Q +
Sbjct: 295 EEDYDILLVDTAGRLQNKVNLMKELEKIARVITREIPDAPHEVLLALDATTGQNALTQAK 354

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            F  V   TG+++TK+DGTA+GG ++ I     +PV  +G+GE ++DL  F  +++ 
Sbjct: 355 QFKDVTNVTGIVLTKLDGTAKGGIVLAIRNELHLPVKLVGLGEKMDDLRDFSPEEYV 411


>gi|145341290|ref|XP_001415746.1| IISP family transporter: signal recognition particle protein
           (SRP54) [Ostreococcus lucimarinus CCE9901]
 gi|144575969|gb|ABO94038.1| IISP family transporter: signal recognition particle protein
           (SRP54) [Ostreococcus lucimarinus CCE9901]
          Length = 498

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 146/307 (47%), Gaps = 16/307 (5%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD-DGV---REELEDLLIRSDIGVAVAQKIVEELLTKR 74
             FA  S KL +    +   + L+ D V    +++   L+ +D+ + V ++ +     K 
Sbjct: 5   DAFAGMSDKLDKAWARLQGEKDLNADNVKAPLKDVRRALLEADVSLPVVRRFIARCEEKA 64

Query: 75  YAKDVSV-----QRVLYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
               V+      Q ++  V++ + +++  + ++   +     P V+L+ G+ GVGKTT  
Sbjct: 65  VGMKVTKGVEPGQMLVKCVADELCELMGGVGAEGIKFRDDGEPTVVLMAGLQGVGKTTAC 124

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS  +   G  V+L A D +R AAIDQLK    +         +  +   +A    ++
Sbjct: 125 GKLSLALRKQGKSVLLVATDVYRPAAIDQLKTLGKQIGVPVFDMGVDGNPPEIAARGVRK 184

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ + +DV+I+DTAGRL+ +  LM  +                  L V+DA TGQ A   
Sbjct: 185 AKDEDIDVVIVDTAGRLNIDEKLMGELKATKEATSA------DETLLVVDAMTGQEAATL 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F+     TG I+TKMDG  RGG  + +      P+ F GVGE ++ LEPF  +  ++
Sbjct: 239 TASFNEAVEITGAILTKMDGDTRGGAALSVREVSGKPIKFTGVGEKMDALEPFYPERMTS 298

Query: 309 VITGCLD 315
            I G  D
Sbjct: 299 RILGMGD 305


>gi|329118039|ref|ZP_08246752.1| signal recognition particle protein [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465927|gb|EGF12199.1| signal recognition particle protein [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 455

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 150/306 (49%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + + +    +I  +  L++        E+   L+ +D+ + V +  V ++  K   
Sbjct: 2   LDNLTGRFRSVFKNISGAATLNEDNIKPALREVRLALLEADVALPVVRDFVAKVKEKALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++S      Q  +  V++ + +++   +   N   +    V L+ G+ G GKTT +GKL
Sbjct: 62  REISENLTAEQAFITVVNQALVELMGGANSSLNLAAAAPAVV-LMAGLQGAGKTTTVGKL 120

Query: 132 SKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++ +       K++L + D +R AAI+QL++ A++  ADF  S +      +A  A  QA
Sbjct: 121 ARLLKTQDKKKKILLVSTDVYRPAAIEQLRLLAEQVQADFFPSNVSQKPVEIARAALAQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DVL++DTAGRL  +  +M  I ++   L       P   L V+DA  GQ+A+   
Sbjct: 181 KRGFYDVLMVDTAGRLAIDQEMMDEIKELHAALD------PVETLFVVDAMLGQDAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TKMDG +RGG  + +      P+ F G GE  + LE F     ++ 
Sbjct: 235 QAFNEALPLTGVILTKMDGDSRGGAALSVRKITGKPIKFFGTGEKTDGLEAFHPDRIASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|110678638|ref|YP_681645.1| signal recognition particle protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109454754|gb|ABG30959.1| signal recognition particle protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 505

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  V+ +  K   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFVKAVQEKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L    +P      + P  +L+VG+ G GKTT   KL
Sbjct: 62  QAVTKSITPGQQVVKIVHDALIDVLKGEGEPGTLKVDNPPASVLMVGLQGSGKTTTTAKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G +V++A+ D  R AA++QL I   +   D +    G D  A+A  A  QA 
Sbjct: 122 AKRLKEKDGKRVLMASLDVNRPAAMEQLAILGAQIGVDTLPIIAGQDPVAIAKRAKTQAG 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  +  LM        V    D  +P   L V+D  TGQ+A+   +
Sbjct: 182 LGGYDVYMLDTAGRLSIDEELMQQ------VEAVRDVASPRETLLVVDGLTGQDAVHTAQ 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F     +  I
Sbjct: 236 NFDERIGISGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGLGEKMDALETFEPDRVAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|332185681|ref|ZP_08387428.1| signal recognition particle protein [Sphingomonas sp. S17]
 gi|332014039|gb|EGI56097.1| signal recognition particle protein [Sphingomonas sp. S17]
          Length = 506

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 147/309 (47%), Gaps = 21/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   L+ +D+ + VA+  V+++  +   
Sbjct: 2   FDSLSDRLGGVFDRLRGRGALTEADVRTAMREVRVALLEADVALPVARDFVDKVTEQAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + +  ML   +     D +  P V+++VG+ G GKTT   K+
Sbjct: 62  QNVLRSITPGQQVVKIVHDALVDMLGADASELLLDVT-PPAVVMMVGLQGSGKTTTTAKI 120

Query: 132 SKKMS-----DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           +K++S         KV++A+ D  R AA +QL     +     +    G     +A  A 
Sbjct: 121 AKRLSSGAMGRERKKVLMASLDVNRPAAQEQLATLGTQVEVSTLPIIAGQQPVEIARRAL 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+ +  DVL++DTAGRLH +  LM  +  +  +        P  +L V+D+ TGQ+A+
Sbjct: 181 QAAKLQGYDVLMLDTAGRLHVDQALMDEMKAVAEI------AQPQEILLVVDSLTGQDAV 234

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F      TG+++T+MDG ARGG  + +      P+ F GVGE ++ LE F  +  
Sbjct: 235 NVATSFSEQVPLTGVVLTRMDGDARGGAALSMRAVTGKPIKFAGVGEKMDALEAFHPERV 294

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 295 AGRILGMGD 303


>gi|157150948|ref|YP_001450086.1| cell division protein FtsY [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075742|gb|ABV10425.1| cell division protein FtsY [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 529

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 167/300 (55%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  + EEL  +
Sbjct: 226 EKYDRSLKKTRTGFGAKLNAFFANFRTVDEDFFEDLEELLITSDVGVQVASNLAEELRYE 285

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+             +F     V+L VGVNGVGKTT IGKL
Sbjct: 286 ARLENAKKPDALRKVIIEKLVDIYEKDGRYNEKINFQDGLTVMLFVGVNGVGKTTSIGKL 345

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G KVML A DTFR+ A+ QL  W  R     V      D A++ ++  ++AQA
Sbjct: 346 AYKYKQEGKKVMLVAADTFRAGAVAQLAEWGKRVDVPVVTGPEKCDPASVVFDGMERAQA 405

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VD+L+IDTAGRL N   LMA + K+ R++KR++P APH     LDA+TGQNAL Q + 
Sbjct: 406 ENVDILMIDTAGRLQNKDNLMAELEKIGRIIKRVNPDAPHETFLALDASTGQNALVQAKE 465

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   + 
Sbjct: 466 FSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSENFMRGLL 525


>gi|32490820|ref|NP_871074.1| hypothetical protein WGLp071 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166026|dbj|BAC24217.1| ftsY [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 326

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 121/318 (38%), Positives = 183/318 (57%), Gaps = 10/318 (3%)

Query: 3   NQKVASESLSWIRKLTKG--------FASTSLKLKEGITDIISSRRLDDGVREELEDLLI 54
            +K   +  ++++KL             ++     + + +I  S+++D+ + EE+E  L+
Sbjct: 6   EEKTKKKQSNFLKKLNNKMISNLKINLINSRKYFSKKLINIFKSKKIDEKLFEEIETHLL 65

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHV 113
            SDIGV   QKI+ EL      K +     +Y+ + E I  ML+   +P        P +
Sbjct: 66  TSDIGVKTTQKIINELNFLNKNKKIKNSENMYEHLKEKISHMLLNAQEPL-LITEKFPFI 124

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL+VGVNGVGKTT I K++KK    G KVM+ AGDTFR+ AIDQL+I         +C  
Sbjct: 125 ILIVGVNGVGKTTTIIKIAKKYKSEGKKVMVVAGDTFRAGAIDQLEILGKNNKIPVICDY 184

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             SDA+++ + A K A+    DVLIIDTAGRLHN   LM  + K+++V+K+LDP APH  
Sbjct: 185 KKSDASSIIFTAIKNAKKNNADVLIIDTAGRLHNKFHLMEELKKIVKVIKKLDPSAPHES 244

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + ++DA TGQN L QVE F+     +G+ +TK+DGT++GG +I I     IP+ ++G G+
Sbjct: 245 MLIIDANTGQNTLNQVEFFNNAIKISGITLTKLDGTSKGGIIIAIADQFNIPIRYIGTGK 304

Query: 294 GINDLEPFVAKDFSAVIT 311
             ND+  F + DF   + 
Sbjct: 305 DNNDIYKFKSYDFVQALF 322


>gi|124008224|ref|ZP_01692921.1| signal recognition particle protein [Microscilla marina ATCC 23134]
 gi|123986323|gb|EAY26145.1| signal recognition particle protein [Microscilla marina ATCC 23134]
          Length = 434

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 150/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +++E +  +    R+ +       +++   LI +D+   +A+++ +++  +   
Sbjct: 2   FESLSQRIEEAVHKLKGKGRITEVNVASTIKDIRRALIDADVNYKIAKQVTDDIKVEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V E + +++    KP   +    P ++L+ G+ G GKTT  GKL
Sbjct: 62  RKVLKSLAPGQVLIKIVHEKLTELMGG--KPQEANLKGSPAIVLMAGLQGSGKTTFSGKL 119

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      KV+L A D +R AAI+QLK+  ++   +        +  A+A  A + A+
Sbjct: 120 ANLIQQKQHKKVLLVACDVYRPAAIEQLKVVGEQIGVEVYAEPDNKNPVAIAQNAVEHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
                V+++DTAGRL  + ++M  I ++   ++      P   L V+DA TGQ+A+   +
Sbjct: 180 THHYKVVVVDTAGRLAIDEVMMLEIAQIKAAIQ------PSETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TKMDG  RGG  + I      P+ F+G GE +  L+ F  +  +  I
Sbjct: 234 AFNERIDFDGVVLTKMDGDTRGGAALSIRAVVDKPIKFIGTGEQMRALDTFRPEGMAGRI 293

Query: 311 TGCLD 315
               D
Sbjct: 294 LDMGD 298


>gi|78211569|ref|YP_380348.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           CC9605]
 gi|78196028|gb|ABB33793.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           CC9605]
          Length = 512

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 174/312 (55%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V+ E + W+ +L +G   T       + + +    L   V ++LE LL+R+D GV    
Sbjct: 198 QVSLEEIDWLGRLRRGLEKTRQGFVTSLLENLGDDPLTPEVLDDLETLLLRADAGVQATD 257

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVN 120
           ++++ L  +   + V     +  + E +  +L         P       R ++ L+VGVN
Sbjct: 258 QVLDALRQRMNEEVVDPAEGIRFLKEQLRGLLDAPIQASGVPLLAPERDRLNIWLMVGVN 317

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W +R+    V +   + D A
Sbjct: 318 GVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVEVWGERSDVPVVSNPSSNADPA 377

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+++K D+L++DTAGRL     LM  + K+ +++ RL P A    L VLDA
Sbjct: 378 AVVFDAIGAARSRKSDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEAKVESLLVLDA 437

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN LRQ   F   AG TG+++TK+DGTARGG  + +     +P+ F+G GEGI DL 
Sbjct: 438 SQGQNGLRQAMAFAQAAGLTGVVITKLDGTARGGVALAVSSEAGLPIRFIGAGEGIRDLR 497

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 498 PFNSFEFVEALL 509


>gi|299065641|emb|CBJ36813.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Ralstonia solanacearum CMR15]
          Length = 478

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 148/324 (45%), Gaps = 35/324 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   LDNLTQRLARVVKTMRGEARLTEANTAEMLREVRLALLEADVALPVVREFIARIKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLM------------------PLSKPFNWDFS-HRPH 112
           ++V       Q ++  V   +  ++                   P+ +    + +   P 
Sbjct: 62  EEVITSLSPGQALVGIVQRELTAIIGGEEAVAPAPGPAGMPAGLPMGRAAELNLNVQPPA 121

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +IL+ G+ G GKTT +GKL+K + +   K +   + D +R AAI QLK  +++  ADF  
Sbjct: 122 IILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFP 181

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S+       +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK        
Sbjct: 182 SQPEQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHATLKPA------ 235

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+GV
Sbjct: 236 ETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGAALSVRHITGKPIKFVGV 295

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
            E ++ LEPF     +  I G  D
Sbjct: 296 AEKLDGLEPFYPDRMAQRILGMGD 319


>gi|288818714|ref|YP_003433062.1| signal recognition particle [Hydrogenobacter thermophilus TK-6]
 gi|288788114|dbj|BAI69861.1| signal recognition particle [Hydrogenobacter thermophilus TK-6]
 gi|308752301|gb|ADO45784.1| signal recognition particle-docking protein FtsY [Hydrogenobacter
           thermophilus TK-6]
          Length = 461

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 183/303 (60%), Gaps = 4/303 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           +  S+I K+ KG   T  K   GI  I+  R++D+ + EELE+ L+R+DIG   A  +VE
Sbjct: 159 KKESFIEKIRKGLQKTKEKALFGI--ILRGRKVDEALFEELEETLVRADIGAKTAINVVE 216

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           EL  +   +++     L D+ +     L+   +        + ++ L +GVNG GKTT I
Sbjct: 217 ELKKEAIKRNIKESEGLRDLLKEKLSSLLTGCQDNIKVKEGKTNIYLFLGVNGSGKTTTI 276

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ K    G +V+L A DTFRSAA++QL++WA R+ AD V  E G+D A++ ++A K+
Sbjct: 277 GKLAYKFVSEGKRVLLCAADTFRSAAVEQLEVWAKRSGADIVKREEGADPASVVFDAMKR 336

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A      +++IDTAGRLH    L+  + K+  V++R  P  P     VLDAT GQN++ Q
Sbjct: 337 ASEYH--LVLIDTAGRLHTKEPLIRELRKIKSVIQRFYPEEPTETFLVLDATLGQNSISQ 394

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F      TG+I+TK+DGTA+GG +IPI    K+PV  LGVGEG++DL+PF A+ F  
Sbjct: 395 AKVFKEAVDITGIILTKLDGTAKGGAIIPICRELKVPVKLLGVGEGLDDLQPFDAEVFVQ 454

Query: 309 VIT 311
            + 
Sbjct: 455 ELL 457


>gi|254559237|ref|YP_003066332.1| signal recognition particle protein, GTPase [Methylobacterium
           extorquens DM4]
 gi|254266515|emb|CAX22279.1| signal recognition particle protein, GTPase [Methylobacterium
           extorquens DM4]
          Length = 520

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L   ++ +     L +        E+   L+ +D+ + V +   +++  K   
Sbjct: 2   FEGLSDRLSGILSGLTRRGALTEADVTAAMREVRRALLEADVALEVVRSFTDKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++ +  ML   +   + + +  P  IL+VG+ G GKTT   K+
Sbjct: 62  AVVLKSVTPGQMVVKIVNDELIAMLGTDASVVDLN-APAPVAILMVGLQGSGKTTTTAKI 120

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++++    + +L A+ DT R AA++QL + A +   + +    G  A  +A  A + A+
Sbjct: 121 ARRLNQRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVESLPIVAGQSAVQIAKRAMEAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  LM    ++    K      PH VL V DA TGQ+A+    
Sbjct: 181 LGGFDVVMLDTAGRTTVDEGLMNEAAEVKAATK------PHEVLLVADALTGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG +RGG  + +      P+  +GVGE ++ LE F     +  I
Sbjct: 235 AFDERLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLVGVGEKVDALEEFHPHRVANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|225011681|ref|ZP_03702119.1| signal recognition particle protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004184|gb|EEG42156.1| signal recognition particle protein [Flavobacteria bacterium
           MS024-2A]
          Length = 442

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL +    +    ++ +       +E+   L+ +D+   +A++    +  K   
Sbjct: 2   FDNLSDKLDKAFQVLKGHGKITEINVAETLKEVRRALLDADVNFKIAKEFTVRVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V + + +++   +   N +   +P +IL+ G+ G GKTT  GKL
Sbjct: 62  QKVLTSLQPSQLLVKIVKDELTELMGSEAVELNLE--EKPAIILMSGLQGSGKTTFTGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +S     K +L A D +R AAIDQL + A++            D   +A  A + A+
Sbjct: 120 ALHLSKKHSKKPLLVACDVYRPAAIDQLGVVAEQVGVAIYEDREEKDPVKIALAALEIAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV++IDTAGRL  + +LM  I  +   +K      P   L V+DA TGQ+A+   +
Sbjct: 180 KDNHDVVLIDTAGRLAIDEVLMKEIKAIHSAVK------PSETLFVVDAMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +    G+I+TK+DG  RGG  + I      P+ F+G GE +  ++ F  +  +  I
Sbjct: 234 AFNDLLNFDGVILTKLDGDTRGGAALTIKSVVNKPIKFIGTGEKMEAIDVFYPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|183602316|ref|ZP_02963683.1| FtsY signal recognition particle [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219682672|ref|YP_002469055.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190250|ref|YP_002967644.1| FtsY signal recognition particle [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195656|ref|YP_002969211.1| FtsY signal recognition particle [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218530|gb|EDT89174.1| FtsY signal recognition particle [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620322|gb|ACL28479.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248642|gb|ACS45582.1| FtsY signal recognition particle [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250210|gb|ACS47149.1| FtsY signal recognition particle [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793237|gb|ADG32772.1| FtsY signal recognition particle [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 466

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 115/318 (36%), Positives = 184/318 (57%), Gaps = 9/318 (2%)

Query: 2   SNQKVASE--SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
             +++       S +++L +  + +S    + + +I++  +L +   E++ED L+ +D+G
Sbjct: 150 PAEQIEKPAGKKSRLQRLRERLSKSSNPFGKALFNILAKDQLSEADWEDVEDTLLLADVG 209

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF--SHRPHVIL 115
              ++++V++L T       S  R L D   SEL+  +   + +    +   + +P VI+
Sbjct: 210 AEASEELVDKLRTDARVTGESDPRQLRDALRSELLALVGPDMDRTLEAEKPDAKKPSVII 269

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-I 174
           +VGVNG GKTT  GKL++        V+L A DTFR+AA DQL+ W  +     V S+  
Sbjct: 270 MVGVNGTGKTTTAGKLARLFVSEDKTVLLGAADTFRAAAADQLETWGAKVDVPVVRSDRE 329

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D A++A+EA  +A+    DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL
Sbjct: 330 GADPASVAFEASAKAKELGTDVLIIDTAGRLQNKANLMDELGKIRRVAEKNLP--VDEVL 387

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQN + Q ++F    G TG+++TK+DG+A+GG +I +     +PV  +GVGEG
Sbjct: 388 LVLDATTGQNGMAQAKVFAEAIGITGVVLTKLDGSAKGGIVISVQKELGVPVKLVGVGEG 447

Query: 295 INDLEPFVAKDFSAVITG 312
            +DL PF  + F   I G
Sbjct: 448 PDDLAPFDPESFVDGILG 465


>gi|189183987|ref|YP_001937772.1| signal recognition particle receptor FtsY [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180758|dbj|BAG40538.1| signal recognition particle receptor FtsY [Orientia tsutsugamushi
           str. Ikeda]
          Length = 315

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 176/300 (58%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           SW+ KLT   + T+ KL   IT + S + +     E+LE++L+ +D GV     I+E   
Sbjct: 6   SWLNKLTAAVSKTTNKLTVQITKLFSEKTITKESIEQLEEVLLSADFGVTATNNIIENFK 65

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           T ++ K++ +  +  ++++ I K   P   P         +V+++ G+NG GKTT IGKL
Sbjct: 66  TIKFNKNIQLDDIKSELAKSIIKFAFPNGNPELHIKPGVLNVMIICGINGNGKTTTIGKL 125

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S   +  G KV +AA DTFR+AA +QL+IWA+R+ +       G+D A++AY+A   A  
Sbjct: 126 SHYYNLQGQKVAIAACDTFRAAATEQLEIWANRSGSYLFKGNPGADPASVAYQAAGWAID 185

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            K+++L IDTAGRLHN+  LM  + K+ +V+ +    +    L  LDAT GQNA  QVE 
Sbjct: 186 NKMNILFIDTAGRLHNHKNLMDQLKKIKKVINQYHSSSVCYTLLTLDATNGQNAFTQVEQ 245

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +    G+I+TK+D T++ G  + I    KIP+YF+G+GE I+D++ F A DF   I 
Sbjct: 246 FQDIVLLDGVIITKLDSTSKAGVAVGIAEKFKIPIYFIGIGEQIDDIKEFNASDFVNAIL 305


>gi|310822873|ref|YP_003955231.1| signal recognition particle protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395945|gb|ADO73404.1| Signal recognition particle protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 544

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/318 (28%), Positives = 147/318 (46%), Gaps = 25/318 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            +  +TKGF S   +L       ++   +D+ +R+ +   L+ +D+   V +K V  +  
Sbjct: 1   MLETVTKGFRSAKNRLAG--KSELTPELVDESLRD-IRVSLLEADVSFDVVKKFVSRVRE 57

Query: 73  KRYAKDVSV---------------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           K   + V                    +    + +  ++ P+          +   I++V
Sbjct: 58  KAVGEVVQTTITDKSGQKRKVSPADYFVKVCHDELEALMGPVDTSLKLKPRGQLSGIMMV 117

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G+ G GKTT  GKL+ ++   G K +L A D +R AA+DQLK+  +R        E G  
Sbjct: 118 GLQGSGKTTTTGKLANRLLQEGRKPLLVAADIYRPAAVDQLKVLGERLKVPVY-FEPGVA 176

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              LA   +  A+ +K DV++IDTAGRL  +  LMA +  +   +       P ++L V 
Sbjct: 177 PPELAVRGYAAAREQKCDVVLIDTAGRLAIDESLMAELESIKGNVH------PDNILLVC 230

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+R    F       G I+TK+DG ARGG  + I      P+ FLG+GE ++ 
Sbjct: 231 DAMIGQDAVRTAAEFDRRLTLDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGESMDK 290

Query: 298 LEPFVAKDFSAVITGCLD 315
           LE F  +  +  I G  D
Sbjct: 291 LEEFRPEGLAGRILGFGD 308


>gi|269977119|ref|ZP_06184093.1| cell division protein FtsY [Mobiluncus mulieris 28-1]
 gi|269934950|gb|EEZ91510.1| cell division protein FtsY [Mobiluncus mulieris 28-1]
          Length = 633

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 10/312 (3%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
                S +R+L +  A    K    I  ++S   L++   E LED L+ +D GV    ++
Sbjct: 323 PESKTSRLRRLKERLAG-KGKFGRAILGVLSRADLEESDWEALEDELLSADFGVEATLEL 381

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHR----PHVILVVGVN 120
           +E+L TK+        + +  +++ +    +    ++  N D           +L+VGVN
Sbjct: 382 IEKLKTKQKVIGTKSAKEVRRMAKRMIGDFLDRHANRDLNLDVPEGHEGNTVGVLIVGVN 441

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT +GKL++ +      V+L A DTFR+AA +QL+ W        + SE   +D A
Sbjct: 442 GGGKTTTVGKLARFLVANRKSVVLGAADTFRAAAGEQLETWGSHVGVPVIRSEKDKADPA 501

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A K A+    DV++IDTAGRL N + LM  +GK+ RV ++  P     VL V+DA
Sbjct: 502 SVAFDAAKAARDNSADVVLIDTAGRLQNKAGLMDELGKIKRVAEKQVP--ITEVLLVIDA 559

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q ++F    G TG+++TK+DG+A+GG ++ +     IPV  +G+GEG +DL 
Sbjct: 560 TTGQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVVVALQRELGIPVKLVGLGEGPDDLA 619

Query: 300 PFVAKDFSAVIT 311
           PFV  DFS  + 
Sbjct: 620 PFVPGDFSDALL 631


>gi|266623886|ref|ZP_06116821.1| signal recognition particle-docking protein FtsY [Clostridium
           hathewayi DSM 13479]
 gi|288864299|gb|EFC96597.1| signal recognition particle-docking protein FtsY [Clostridium
           hathewayi DSM 13479]
          Length = 313

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 125/306 (40%), Positives = 179/306 (58%), Gaps = 4/306 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
           SE   +  KL  G   T   +  G+  I S    +DD   EE+E+ LI  D+G+     I
Sbjct: 2   SEKKGFFGKLVAGLQKTRDNIISGMDSIFSGFSAIDDEFYEEIEETLIMGDLGIQTTMSI 61

Query: 67  VEELLTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           VE+L  K   + +         + E I   +        +++ +R  V+L++GVNGVGKT
Sbjct: 62  VEDLRKKVKEQGIKDPSECKELLMESIRDQMD--LGENAYEYENRQSVLLIIGVNGVGKT 119

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL+ ++ D G KV+LAA DTFR+AAI+QL  WA+R   D +  + GSD AA+ Y+A
Sbjct: 120 TSVGKLAGQLKDDGKKVILAAADTFRAAAIEQLTEWANRAGVDIIAQQEGSDPAAVVYDA 179

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A++++ D+LI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQNA
Sbjct: 180 VAAAKSRRADILICDTAGRLHNKKNLMEELKKINRIIDKEFPEAYRETLVVLDGTTGQNA 239

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q   F  VA  TG+I+TK+DGTA+GG  + I     IPV ++GVGE I+DL+ F A++
Sbjct: 240 LSQARQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYVGVGEKIDDLQKFNAEE 299

Query: 306 FSAVIT 311
           F   + 
Sbjct: 300 FVNALF 305


>gi|311063767|ref|YP_003970492.1| signal recognition particle subunit FFH/SRP54 [Bifidobacterium
           bifidum PRL2010]
 gi|310866086|gb|ADP35455.1| Ffh Signal recognition particle, subunit FFH/SRP54 [Bifidobacterium
           bifidum PRL2010]
          Length = 548

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +     +  + 
Sbjct: 2   AAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTARIRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 62  LGTEVSEALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CS 172
           GKL   + D+G   +L A D  R  A+ QL++  +R                        
Sbjct: 121 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGDSVSAPG 180

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E   D   +A ++   A+ K  D +IIDTAGRL  + +LM     +       D   P+ 
Sbjct: 181 ETSGDPVKVARDSIALAKQKLYDTVIIDTAGRLGVDEVLMQQARDI------RDAVNPNE 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 235 ILFVIDAMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTG 294

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 295 EGLKDFEVFHPDRMASRILDMGD 317


>gi|332290696|ref|YP_004429305.1| signal recognition particle protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332168782|gb|AEE18037.1| signal recognition particle protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 442

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL + +  +     + +       +E+   LI +D+    A++    +  K   
Sbjct: 2   FDNLSDKLDKALHVLKGHGSITEVNVAETLKEVRRALIDADVNFKTAKEFTNRVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q ++  V + + +++   ++  N   S  P +IL+ G+ G GKTT  GKL
Sbjct: 62  SDVLTTLQPGQLMVKLVKDELTELMGGDAEGINL--SGTPSIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  +L A D +R AAIDQL +  D+   D        +   +A +    A+
Sbjct: 120 ANFLKTKKTKKPLLVACDVYRPAAIDQLHVVGDQIKVDVYSDRDEKNPVKIAQDGIAFAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   +V+IIDTAGRL  + ++M  I  +   ++      P   L V+D+ TGQ+A+   +
Sbjct: 180 ANGHNVVIIDTAGRLAVDEVMMKEIADVHAAIQ------PQETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +    G+I+TK+DG  RGG  I I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 AFNDILNFDGVILTKLDGDTRGGAAISIKSVVNKPIKFIGTGEKMEAIDVFYPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|297617462|ref|YP_003702621.1| signal recognition particle-docking protein FtsY [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145299|gb|ADI02056.1| signal recognition particle-docking protein FtsY [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 361

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 132/304 (43%), Positives = 193/304 (63%), Gaps = 3/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              +  +L K  A T   + E +  +I +SRR+DD   EELE++LI++D+GV+ A ++++
Sbjct: 57  KEGFFARLKKSLAKTRQNITEKVERLIKTSRRIDDEFFEELEEILIQADVGVSTAMELID 116

Query: 69  ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L      K ++    +   + + +  ++     P N      P VI+VVGVNGVGKTT 
Sbjct: 117 NLRRAVKQKKITEVDEVRGLIKQEVVSIMEGSDAPLN-KAPEGPTVIMVVGVNGVGKTTT 175

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G KV++AA DTFR+AAIDQL+IWA+R  AD +  + G+D  A+ ++A  
Sbjct: 176 IGKLAYRFKREGKKVIIAAADTFRAAAIDQLQIWAERVGADLIKHQEGADPGAVVFDAVN 235

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            AQA++ DVLI+DTAGRLH  + LM  I K+ RV++R    APH VL VLDATTGQNA+ 
Sbjct: 236 AAQARRADVLIVDTAGRLHTKTNLMEEIAKVKRVIQRTYADAPHEVLLVLDATTGQNAIS 295

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q  +F  V G TG+++TK+DGTA+GG +I I     IPV  +G+GEG+ DL  F A++F+
Sbjct: 296 QANLFKQVTGVTGIVLTKLDGTAKGGIVIAIAKELDIPVKLVGIGEGLEDLRDFSAEEFA 355

Query: 308 AVIT 311
             + 
Sbjct: 356 EALF 359


>gi|163796732|ref|ZP_02190690.1| signal recognition particle protein [alpha proteobacterium BAL199]
 gi|159177986|gb|EDP62533.1| signal recognition particle protein [alpha proteobacterium BAL199]
          Length = 495

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L      +     L +        E+   L+ +D+ + V +  V+ +  +   
Sbjct: 2   FEGLSERLGSVFDRLRKRGALSEADVTAAMREVRVALLEADVALPVVKTFVDRVRERAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q V+  V + +  ML   S+  N +       IL+VG+ G GKTT   K+
Sbjct: 62  REVLRSVTPGQMVVKIVHDELVDMLGSDSQAINLNAPAPVP-ILMVGLQGGGKTTTTAKI 120

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +    KV++A+ D  R AA +QL+I  ++     +    G   AA+A  A    +
Sbjct: 121 AKRLRERDRKKVLMASLDVTRPAAREQLRILGEQVGVATLPIINGETPAAIAKRAMTAGR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+I+DTAGR   +  LMA       V    D   PH VL V DA TGQ+A+    
Sbjct: 181 LQGYDVVILDTAGRTSIDEGLMAE------VRAVRDAVNPHEVLLVADALTGQDAVTTAT 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G TG+++T++DG +RGG  + +     +P+  LGVGE ++D+E F  +  +  I
Sbjct: 235 NFHERVGITGIVLTRVDGDSRGGAALSMRGVTGMPIKMLGVGEKVDDIEDFHPERLAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|297571146|ref|YP_003696920.1| signal recognition particle protein [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931493|gb|ADH92301.1| signal recognition particle protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 513

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 144/307 (46%), Gaps = 18/307 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S ++   + ++    RL +     V  ++   L+ +D+ + V +     +  K   
Sbjct: 2   FNSLSDRITGSLRNLRKQGRLSEQDVEAVISDIRRALLDADVALLVVRAFTAAVREKAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              S      Q+V+  V++ +  +L   ++  NW     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AVASQALNPAQQVVKIVNDELISVLGGEARDINWAADGEPTVIMLAGLQGAGKTTLAGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + + + G + +L A D  R  A+ QL + A +   D    E G+   D   +A    + 
Sbjct: 122 GRWLRENGKRPLLVASDLQRPNAVQQLTVVAGQAGVDVWAPEPGNGIGDPVQVAKSGVEH 181

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A++   DV+++DTAGRL  +  LM     +   +       PH VL VLDA  GQ+A+  
Sbjct: 182 ARSAGFDVVVVDTAGRLGIDEELMEQARNIRNAVN------PHEVLFVLDAMIGQDAVNT 235

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G TG++++K+DG ARGG  + +      PV F   GE ++  E F A   ++
Sbjct: 236 SLAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGQPVLFASTGEKLDAFERFHADRMAS 295

Query: 309 VITGCLD 315
            I    D
Sbjct: 296 RILDMGD 302


>gi|291456068|ref|ZP_06595458.1| signal recognition particle protein [Bifidobacterium breve DSM
           20213]
 gi|291382477|gb|EFE89995.1| signal recognition particle protein [Bifidobacterium breve DSM
           20213]
          Length = 551

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 150/323 (46%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      + S  +L     DG   E+   L+ +D+ + V +    ++  + 
Sbjct: 2   AAFSSLTDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +VS      Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ 
Sbjct: 62  LGTEVSEALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CS 172
           GKL   + D+G   +L A D  R  A+ QL++  +R                        
Sbjct: 121 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPG 180

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +   D   +A ++ + A+ K  D +IIDTAGRL  +  LM     +  V++      P+ 
Sbjct: 181 QTSGDPVKVARDSIELAKQKLYDTVIIDTAGRLGVDEELMKQARDIRDVVQ------PNE 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 235 ILFVIDAMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTG 294

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 295 EGLKDFEVFHPDRMASRILDMGD 317


>gi|315230023|ref|YP_004070459.1| signal recognition particle [Thermococcus barophilus MP]
 gi|315183051|gb|ADT83236.1| signal recognition particle [Thermococcus barophilus MP]
          Length = 448

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
              S    L   +  +  +  +D+     V  +++  LI SD+ V +   + +++  +  
Sbjct: 2   ALESLGKALNAALKKLARAGSVDEVLIKEVVRDIQRALIMSDVNVKLVLDLTKKIQKRAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +         + ++  V E +   L   +KP   +   +P ++L VG+ G GKTT + K
Sbjct: 62  EEKPPAGVSRREHIIKIVYEELTNFLGKEAKPI--EIKEKPTILLTVGIQGSGKTTTVAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++     G KV L   DT+R  A  QLK   +  S +        DA  LA E  +  +
Sbjct: 120 LARYFQKRGYKVGLVCSDTWRPGAYHQLKQLVEPYSIEVFGDPNEKDAVRLAKEGVEYFK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K VD++I+D+AGR      L+  + ++   +       PH V+ V+D T GQ A  Q  
Sbjct: 180 HKGVDIIIVDSAGRHKEEKSLIEEMKQISDAIN------PHEVILVIDGTIGQQAYSQAL 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TK+DG+A+GGG +  VV    P+ F+GVGE I+DLEPF  K F + +
Sbjct: 234 AFKEATPIGSIIVTKLDGSAKGGGALSAVVATGAPIKFIGVGERIDDLEPFDPKRFVSRL 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGLGD 298


>gi|34763139|ref|ZP_00144108.1| Cell division protein ftsY [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887202|gb|EAA24304.1| Cell division protein ftsY [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 344

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 117/297 (39%), Positives = 183/297 (61%), Gaps = 3/297 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +++    +       + +I +S+ ++DD + EELEDLL++SD+G+++   ++++L  +  
Sbjct: 48  ISQRLTKSKEGFFSKLKNIFTSKSKVDDSIYEELEDLLLQSDVGLSMTTNLIDQLEKEVK 107

Query: 76  AKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           +K V     +Y  +  L+ + L+           ++ +VIL+VGVNGVGKTT IGKL+ K
Sbjct: 108 SKKVDNTEEVYEILKRLMSEFLLSQDSKIYLK-DNKINVILIVGVNGVGKTTTIGKLALK 166

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             + G KV+L AGDTFR+AA++QL+ WA R   D V    G+D A++ Y+   +A++ K 
Sbjct: 167 YKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADPASVVYDTLSRAESTKA 226

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D TTGQN L Q + F++
Sbjct: 227 DVVIIDTAGRLHNKANLMRELEKINNIIKKKIREQEYESLLVIDGTTGQNGLNQAKEFNS 286

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL  F AKDF   I 
Sbjct: 287 VTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLIEFNAKDFVEAIF 343


>gi|239813969|ref|YP_002942879.1| signal recognition particle protein [Variovorax paradoxus S110]
 gi|239800546|gb|ACS17613.1| signal recognition particle protein [Variovorax paradoxus S110]
          Length = 462

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 141/302 (46%), Gaps = 17/302 (5%)

Query: 24  TSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            + K    +  +    R+ +     +  E+   L+ +D+ + V +  V  +  K   ++V
Sbjct: 5   LTEKFSRLVKTMSGQARITESNVQDMLREVRMALLEADVALPVVRDFVARVKEKSLGQEV 64

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                  Q ++  V+  +   +       N   +  P VIL+ G+ G GKTT   KL+K 
Sbjct: 65  LGSLKPGQALVGIVNRELAATMGEGVSDINL-AAQPPAVILMAGLQGAGKTTTTAKLAKH 123

Query: 135 MSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           + +    KV+  +GD +R AAI+QLK+   +  A++  S        +A  A   A+   
Sbjct: 124 LIEKRKKKVLTVSGDVYRPAAIEQLKMVTKQAGAEWFPSTPDQKPLDIARAALDHAKRHF 183

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DVL++DTAGRL  + +LM  I ++   L       P   L V+DA  GQ+A+   + F 
Sbjct: 184 FDVLLVDTAGRLAIDEVLMTEIKQLHGALD------PVETLFVVDAMQGQDAINTAKAFK 237

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                TG+I+TK DG +RGG  + +     +P+ F G  E I+ LE F A+  +  I G 
Sbjct: 238 EALPLTGIILTKTDGDSRGGAALSVRQVTGVPIKFAGTSEKIDGLEVFDAERHAGRILGM 297

Query: 314 LD 315
            D
Sbjct: 298 GD 299


>gi|163850093|ref|YP_001638136.1| signal recognition particle protein [Methylobacterium extorquens
           PA1]
 gi|163661698|gb|ABY29065.1| signal recognition particle protein [Methylobacterium extorquens
           PA1]
          Length = 520

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L   ++ +     L +        E+   L+ +D+ + V +   +++  K   
Sbjct: 2   FEGLSDRLSGILSGLTRRGALTEADVTAAMREVRRALLEADVALEVVRSFTDKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++ +  ML   +   + + +  P  IL+VG+ G GKTT   K+
Sbjct: 62  AVVLKSVTPGQMVVKIVNDELIAMLGTDASVVDLN-APAPVAILMVGLQGSGKTTTTAKI 120

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++++    + +L A+ DT R AA++QL + A +   + +    G  A  +A  A + A+
Sbjct: 121 ARRLNQRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVESLPIVAGQSAVQIAKRAMETAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  LM    ++    K      PH VL V DA TGQ+A+    
Sbjct: 181 LGGFDVVMLDTAGRTTVDEGLMNEAAEVKAATK------PHEVLLVADALTGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG +RGG  + +      P+  +GVGE ++ LE F  +  +  I
Sbjct: 235 AFDERLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLVGVGEKVDALEEFHPQRVANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|256545171|ref|ZP_05472537.1| signal recognition particle-docking protein FtsY [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399212|gb|EEU12823.1| signal recognition particle-docking protein FtsY [Anaerococcus
           vaginalis ATCC 51170]
          Length = 371

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 128/308 (41%), Positives = 192/308 (62%), Gaps = 3/308 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
             E L +  KL+KG + T  +    + ++ ++  ++DD + +ELE++LI +DIG+    +
Sbjct: 63  TEEELGFFTKLSKGLSKTREQFSSKLKNLFTANVKIDDDLYDELEEILISADIGMKSTIE 122

Query: 66  IVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVG 123
           IV++L  +   K V     ++ +  E++ K L   +   N + S  +  VILV+GVNGVG
Sbjct: 123 IVDQLKYEIKEKSVKNADEIFPLLKEIMEKKLDEKNLENNLNISKDKLTVILVIGVNGVG 182

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+  +   G KV LAA DTFR+AAI+QL +WA +++   +  + GSD +A+ +
Sbjct: 183 KTTTIGKLANNLKKDGYKVTLAAADTFRAAAIEQLDLWAKQSNTQMIAHKEGSDPSAVIF 242

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A K DVLI DTAGRLHN   LM  + K+ R +     +A    L VLDATTGQ
Sbjct: 243 DAIQAAKANKSDVLICDTAGRLHNKKNLMNELEKINRTISTHANNANRENLLVLDATTGQ 302

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NA+ Q+  F  V   TGLI+TK+DGTA+GG + P+ V  ++PV ++GVGEGIN+LE F +
Sbjct: 303 NAISQLREFKNVCDITGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGINNLEKFDS 362

Query: 304 KDFSAVIT 311
           K F   + 
Sbjct: 363 KSFVEAMF 370


>gi|254439394|ref|ZP_05052888.1| signal recognition particle protein [Octadecabacter antarcticus
           307]
 gi|198254840|gb|EDY79154.1| signal recognition particle protein [Octadecabacter antarcticus
           307]
          Length = 502

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L  D V+  L +    L+ +D+ ++VA+  +  +  K   
Sbjct: 2   FESLSDRLSGVFDRLTKQGALSADDVKTALREVRIALLEADVSLSVARDFINAVQEKASG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L     P      + P  IL+VG+ G GKTT   KL
Sbjct: 62  QSVTKSVTPGQQVVKIVHDELVHVLQGDGDPGALKIDNPPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G KV++A+ D  R AA++QL+I   +   D +    G D   +A  A   A 
Sbjct: 122 AKRLKERDGKKVLMASLDVNRPAAMEQLQILGAQIGVDTLPIVKGEDPVKIAKRAKTAAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV I+DTAGRLH ++ L+A    +       D   P   L V+D  TGQ+A+    
Sbjct: 182 MGGYDVYILDTAGRLHIDAELIAQAAAV------RDVAQPRETLLVVDGLTGQDAVNVAT 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F A+  +  I
Sbjct: 236 EFDDKIGVTGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDAIEEFHAERVAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|91079686|ref|XP_967889.1| PREDICTED: similar to AGAP004610-PA [Tribolium castaneum]
 gi|270003347|gb|EEZ99794.1| hypothetical protein TcasGA2_TC002574 [Tribolium castaneum]
          Length = 508

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++ V     +E+   L+ +D+ + + +K+ E +      
Sbjct: 3   LADLGRKITTALQSLSKATIINEEVLNGMLKEICAALLEADVNIRLVKKLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      +P+VI+ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQ-PVKGKPNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K    +    F  S    D   +A +     + 
Sbjct: 122 AYHYQKKNWKSCLVCADTFRAGAYDQVKQNCTKARIPFYGSYTEVDPVVIAQDGVDMFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +  +   ++      P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEIIIVDTSGRHKQEESLFEEMLAVSNAIQ------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V     P+ ++G GE I+DLEPF  K F + + 
Sbjct: 236 FKEKVDVGSVIITKLDGHAKGGGALSAVAATNSPIIYIGTGEHIDDLEPFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|157826227|ref|YP_001493947.1| Signal recognition particle-docking protein FtsY [Rickettsia akari
           str. Hartford]
 gi|157800185|gb|ABV75439.1| Signal recognition particle-docking protein FtsY [Rickettsia akari
           str. Hartford]
          Length = 303

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 188/303 (62%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++LD    EELE+LLI SD+ ++V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLDTETLEELEELLIASDMSISVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   ++ELI + L     PF  +  ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAELIEQQLSKAEIPFTLN-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G KV +AA DTFR+AA++QL  W DR +A  +  E  +D A++AY A +++ 
Sbjct: 121 LAAMYSAQGKKVAVAACDTFRAAAVNQLSSWVDRANALLITGEESADPASVAYRAMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D+L +DTAGRLHN   LM  + K+++V+ +LD HA    + V+DA TGQN   Q+E
Sbjct: 181 KQNIDMLFLDTAGRLHNKKNLMDELSKIVKVITKLDGHAHTHSILVIDAITGQNTYNQIE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TGLI+TK+DG+A+ G L+ +V    +PVYF+G+GE I DL+ F   DF+  +
Sbjct: 241 HFNNATNLTGLIVTKLDGSAKAGVLVGVVQKFNLPVYFIGIGEKIEDLKIFHRHDFAKSL 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|291166848|gb|EFE28894.1| signal recognition particle protein [Filifactor alocis ATCC 35896]
          Length = 451

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + KL+  + D+    +L +   +    E++  L+ +D+   V +  V+++  +   
Sbjct: 3   FEGLADKLQSTLKDLRGKGKLSEKDIDTAMREVKLALLEADVNFKVVKDFVKKVKERSLG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V++ +  ++  +    ++  S  P V+++VG+ G GKTT + K+
Sbjct: 63  AEVMESLTPGQQVVKIVNDEMTNLMGSVQSRISF-TSKPPTVVMMVGLQGAGKTTTVAKI 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
                  G   M  A D +R AAI QL++  ++        E   +  ++A    ++A+ 
Sbjct: 122 GHLFKKQGKVPMAIACDVYRPAAIKQLQVVGEQAGITVYTEEGNKNPVSIAKNGVERAKV 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D+++IDTAGRLH +  LM  + ++   +       P  +L V+D+ TGQ+A+   + 
Sbjct: 182 LGHDLVLIDTAGRLHIDGELMDELKQIKEQV------RPTEILLVVDSMTGQDAVNVSQS 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+++TK+DG  RGG  + I      P+ F  +GE + DLEPF     ++ I 
Sbjct: 236 FDEALGVDGIVLTKLDGDTRGGAALSIKAVTGKPIKFSAIGEKLGDLEPFYPDRMASRIL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDM 300


>gi|304320471|ref|YP_003854114.1| signal recognition particle protein [Parvularcula bermudensis
           HTCC2503]
 gi|303299373|gb|ADM08972.1| signal recognition particle protein [Parvularcula bermudensis
           HTCC2503]
          Length = 496

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 152/306 (49%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +  V E L +    L+ +D+ + VA+  V ++  +   
Sbjct: 2   FDTLSDRLSGVFEKLRGRGALTEKDVSEALREVRVALLEADVALPVARDFVGKVKERAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGK 130
           ++V       Q+V+  V +++   L         D +   P  IL+VG+ G GKTT   K
Sbjct: 62  QEVLRSVTPGQQVVKIVHDVLVDTLGGGDNAHELDLTKAPPSAILMVGLQGSGKTTTSAK 121

Query: 131 LSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K++ +   K + +A+ DT R AA++QLK+  ++     +    G  A  +A  A + A
Sbjct: 122 LAKRLKEKDRKRVLMASLDTRRPAAMEQLKVLGEQADVPTLPIVPGQSAVQIAGRAMEAA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D++I+DTAGRL  +  LMA + ++          +P   L VLD+ TGQ+A++  
Sbjct: 182 RLGGHDIVILDTAGRLSIDEELMAEVKQIHT------KTSPVETLLVLDSLTGQDAVQTA 235

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F A    +G+++T++DG  RGG  + +      P+ F GVGE ++ L+ F  +  +  
Sbjct: 236 ERFKARVPVSGVVLTRLDGDGRGGAALSMRSVTGAPIKFAGVGEKLDALDVFDPERMAGR 295

Query: 310 ITGCLD 315
           I G  D
Sbjct: 296 ILGMGD 301


>gi|126738051|ref|ZP_01753772.1| signal recognition particle protein [Roseobacter sp. SK209-2-6]
 gi|126720548|gb|EBA17253.1| signal recognition particle protein [Roseobacter sp. SK209-2-6]
          Length = 509

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 151/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  V+++  +   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFVKKVQEQATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + + ++L            + P  IL+VG+ G GKTT  GKL
Sbjct: 62  QAVTKSVTPGQQVVKIVHDALVEVLRGDEDLGTLKVDNPPAPILMVGLQGSGKTTTTGKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G +V++A+ D +R AA+DQLK+   +   D +    G     +A  A +QA 
Sbjct: 122 AKRLKEKEGKRVLMASLDVYRPAAMDQLKVLGTQIGVDTLPIVPGQKPVDIAKRAKQQAT 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH +  LM  +  +  V+       P   L V+D  TGQ A+   E
Sbjct: 182 LGGYDVYMLDTAGRLHIDETLMQEVEDVRNVVS------PRETLLVVDGLTGQVAVEVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A  G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F  +  +  I
Sbjct: 236 EFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDAIETFEPERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|319744740|gb|EFV97082.1| cell division protein FtsY [Streptococcus agalactiae ATCC 13813]
          Length = 536

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 177/312 (56%), Gaps = 3/312 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           +Q    ++ S   K  +    T       +   +S+ RR+D+   EELE++LI SD+GV 
Sbjct: 221 SQADTIKAESQEEKYNRSLKKTRTGFSARLNAFLSNFRRVDEEFFEELEEMLILSDVGVN 280

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           VA ++ E+L  +   ++      L    V +L+             +F     V+L VGV
Sbjct: 281 VATQLTEDLRYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V  E  +D A
Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEEKADPA 400

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA
Sbjct: 401 SVVFDGMEKAVAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+ 
Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIG 520

Query: 300 PFVAKDFSAVIT 311
            F ++DF   + 
Sbjct: 521 EFNSEDFMRGLL 532


>gi|256845346|ref|ZP_05550804.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           3_1_36A2]
 gi|256718905|gb|EEU32460.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           3_1_36A2]
          Length = 344

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 117/297 (39%), Positives = 181/297 (60%), Gaps = 3/297 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +++    +       + +I +S+ ++DD + EELEDLL++SD+G+ +   ++ +L  +  
Sbjct: 48  ISQRLTKSKEGFFSKLKNIFTSKSKVDDSIYEELEDLLLQSDVGLTMTTNLINQLEKEVK 107

Query: 76  AKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           A  V     +Y  +  L+ + L+          +++ +VIL+VGVNGVGKTT IGKL+ K
Sbjct: 108 ANKVDNTEKVYEILKRLMSEFLLSQDSKIYLK-NNKINVILIVGVNGVGKTTTIGKLALK 166

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             + G KV+L AGDTFR+AA++QL+ WA R   D V    G+D A++ Y+   +A++ K 
Sbjct: 167 YKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADPASVVYDTLSRAESTKA 226

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D TTGQN L Q + F++
Sbjct: 227 DVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAKEFNS 286

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL  F AKDF   I 
Sbjct: 287 VTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLIEFNAKDFVEAIF 343


>gi|221640546|ref|YP_002526808.1| Signal recognition particle subunit FFH/SRP54 [Rhodobacter
           sphaeroides KD131]
 gi|221161327|gb|ACM02307.1| Signal recognition particle subunit FFH/SRP54 [Rhodobacter
           sphaeroides KD131]
          Length = 505

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   L+ +D+ + VA+  V+++  K   
Sbjct: 2   FESLSERLGGVFERLTKQGALTEDDVATALREVRVALLEADVSLPVARDFVKKVQEKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L    +       + P  IL+VG+ G GKTT   KL
Sbjct: 62  QGVTKSVTPGQQVVKIVHDELVSVLRGEGEADALKIDNPPATILMVGLQGSGKTTTTAKL 121

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++    G +V++A+ DT R AA++QL+I   +   D +    G  A  +A  A  Q  
Sbjct: 122 AKRLAERQGKRVLMASLDTNRPAAMEQLQILGAQIGVDTLPIVKGESAVQIAKRAKTQGA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGRLH + +LM  +  +       D   P   L V+D  TGQ+A+    
Sbjct: 182 MGGYDVIMLDTAGRLHIDEVLMEEVQAV------RDLAQPRETLLVVDGLTGQDAVNVAA 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  I
Sbjct: 236 EFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|124515662|gb|EAY57171.1| Signal recognition particle protein [Leptospirillum rubarum]
 gi|206602282|gb|EDZ38764.1| Signal recognition particle protein [Leptospirillum sp. Group II
           '5-way CG']
          Length = 444

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL----DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +  + +  I     L     D    E+   L+ +D+ + V +   E+L T+   
Sbjct: 2   FESLTERFDQVLRKITGRGLLGEAQVDETLREIRVALLEADVNLDVVKSFTEQLRTRLKG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q VL +V + +  +L           S  P VI+++G+ G GKTT   KL
Sbjct: 62  AEVKEGLTPPQTVLKEVFDEVVHLLGDQKANLQLS-SKPPTVIMLMGLQGSGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQ 190
           +     +G +V+L A D  R AA++QLK+  ++ +   V   E  S+   +  +  K+  
Sbjct: 121 AYHFRQSGRRVLLVASDLARLAAVEQLKVLGEQINVPVVAPDEGLSNPRDMFPKVRKKWI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRL  +  LM  +  +  + K  +       L VLDA TGQ ++   +
Sbjct: 181 EGMHEVVILDTAGRLSIDQNLMKELSDLRELYKPKEA------LLVLDAMTGQESVHVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G  G+I TK+DG ARGG ++ I      P+ F+GVGE I+ LEPF     ++ I
Sbjct: 235 AFDETIGIDGVIFTKLDGDARGGAILSIRSVMGKPIKFVGVGEKIDKLEPFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 IGMGD 299


>gi|77413067|ref|ZP_00789268.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae 515]
 gi|77160860|gb|EAO71970.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae 515]
          Length = 536

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 177/312 (56%), Gaps = 3/312 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           +Q    ++ S   K  +    T       +   +S+ RR+D+   EELE++LI SD+GV 
Sbjct: 221 SQADTIKAESQEEKYNRSLKKTRTGFSARLNAFLSNFRRVDEEFFEELEEMLILSDVGVN 280

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           VA ++ E+L  +   ++      L    V +L+             +F     V+L VGV
Sbjct: 281 VATQLTEDLRYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V  E  +D A
Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEEKADPA 400

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA
Sbjct: 401 SVVFDGMEKAIAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+ 
Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIG 520

Query: 300 PFVAKDFSAVIT 311
            F ++DF   + 
Sbjct: 521 EFNSEDFMRGLL 532


>gi|121602489|ref|YP_988406.1| signal recognition particle protein [Bartonella bacilliformis
           KC583]
 gi|120614666|gb|ABM45267.1| signal recognition particle protein [Bartonella bacilliformis
           KC583]
          Length = 515

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   ++++     L +        E+   L+ +D+ + V +   +++  K   
Sbjct: 2   FESLQERLGSILSNLTGRGALSEQDVATALREIRRALLEADVALDVVRSFTDKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +       Q V+  V + +  ML   S   +++ +  P V++++G+ G GKTT   KL
Sbjct: 62  SAIVKSIKPGQMVVKIVHDELVNMLGDESVLGDFN-APAPVVVMLIGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+++D    KV++A+ DT R AA +QL+   ++     +    G  A  +A  A + A+
Sbjct: 121 AKRLTDKHNKKVLMASLDTRRPAAQEQLRQLGEQGKLASLPIVPGQSAVDIAVRAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV++ DTAGR H +  LM  + ++           PH +L V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLFDTAGRNHIDEALMLELAQIKA------SSLPHEILLVADSLTGQDAVHLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+I+T+MD   RGG  + +      P+  +G+GE ++ LE F     +  I
Sbjct: 235 SFDERVGLTGIILTRMDSDGRGGAALSMRAVTGKPIKAIGIGEKMDALEEFHPSRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|297566681|ref|YP_003685653.1| signal recognition particle protein [Meiothermus silvanus DSM 9946]
 gi|296851130|gb|ADH64145.1| signal recognition particle protein [Meiothermus silvanus DSM 9946]
          Length = 435

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 135/305 (44%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +++  +  +    R+ +        E+   L+ +D+   VA+  V  +  K   
Sbjct: 2   FETLSQRIRAAVDKLRGRGRISEADLKTTLREIRMSLLEADVNFEVAKAFVNAVQEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       +++L  V E + + L   +K          ++  +VG+ G GKTT  GKL
Sbjct: 62  AQVLESLTPAEQILTIVYEELVQTLGGEAKQPTLKSEG--NLWFMVGLQGSGKTTTSGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL+I  ++     +    G      A    +    
Sbjct: 120 AAFYKAKGRRPLLVAADTQRPAAREQLRILGEKVGVPVLEVADGERPEVTARRLREHLTF 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRL  +  LM  + K+  VL       P     V+DA TGQ AL     
Sbjct: 180 DYRDLVIVDTAGRLQIDEALMGELAKLKEVL------RPTETFLVIDAMTGQEALGVSRT 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G +GLI+TK+DG ARGG  +      + P+ F GV E I  LEPF     ++ I 
Sbjct: 234 FDERVGISGLILTKLDGDARGGAALSARYVTQKPIVFAGVSEKIEGLEPFYPDRLASRIL 293

Query: 312 GCLDY 316
           G  D 
Sbjct: 294 GMGDL 298


>gi|307943452|ref|ZP_07658796.1| signal recognition particle protein [Roseibium sp. TrichSKD4]
 gi|307773082|gb|EFO32299.1| signal recognition particle protein [Roseibium sp. TrichSKD4]
          Length = 519

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   LI +D+ + V +   +++  +   
Sbjct: 2   FESLSDRLSGIFDKLTGRGALSENDVNEALREIRRALIEADVALPVVRSFTDKVKHRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + + +ML    +  + + +  P  I++VG+ G GKTT   K+
Sbjct: 62  AEVVKSVTPGQMVVKIVHDQLIEMLGVDGQAIDLN-APAPVAIMMVGLQGSGKTTTTSKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++      KV++A+ DT R AA +QLK+  ++   D +    G     +A  A   A+
Sbjct: 121 ARRLTQRDKRKVLMASLDTRRPAAQEQLKVLGEQNEIDTLPIIEGQGPVEIANRAMSAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR+H +  LM  + ++ +         PH +L V DA TGQ+A+   +
Sbjct: 181 LGGYDVVMLDTAGRIHIDEPLMVEMAEVKKA------AQPHEILLVADALTGQDAVNLAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+ +T+MDG  RGG  + +      PV  +G GE  + LE F  K  +  I
Sbjct: 235 SFDERVGITGIALTRMDGDGRGGAALSMQAVTGKPVKLIGTGEKSDALEDFYPKRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|76788040|ref|YP_329475.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae A909]
 gi|76563097|gb|ABA45681.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae A909]
          Length = 536

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 176/312 (56%), Gaps = 3/312 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           +Q    ++ S   K  +    T       +   +S+ RR+D+   EELE++LI SD+GV 
Sbjct: 221 SQADTIKAESQEEKYNRSLKKTRTGFSARLNAFLSNFRRVDEEFFEELEEMLILSDVGVN 280

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           VA ++ E+L  +   ++      L    V +L+             +F     V+L VGV
Sbjct: 281 VATQLTEDLRYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V  E  +D A
Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEEKADPA 400

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA
Sbjct: 401 SVVFDGMEKAVAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TGLI+TK+DGTA+GG  + I     IPV F+G GE I+D+ 
Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVALAIRQELDIPVKFIGFGEKIDDIG 520

Query: 300 PFVAKDFSAVIT 311
            F ++DF   + 
Sbjct: 521 EFNSEDFMRGLL 532


>gi|148223543|ref|NP_001080564.1| signal recognition particle 54kDa [Xenopus laevis]
 gi|27924197|gb|AAH44991.1| Srp54 protein [Xenopus laevis]
          Length = 504

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      +P+VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQTAVFKELVKLVDPGVKAWT-PTKGKPNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +AYE  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVNIAYEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L+  +   P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIVIVDTSGRHKQEDSLFEEM------LQVSNAVQPDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|42543564|pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
           Domains Signal Recognition Particle (Ffh) And Its
           Receptor (Ftsy)
          Length = 300

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 141/304 (46%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + V +  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V       + +L  V E + + L   ++          ++  +VG+ G GKTT   KL
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEAR---LPVLKDRNLWFLVGLQGSGKTTTAAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL++  ++     +    G    ++     ++A+ 
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL     
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  +  I 
Sbjct: 233 FDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|307700126|ref|ZP_07637172.1| signal recognition particle-docking protein FtsY [Mobiluncus
           mulieris FB024-16]
 gi|307614675|gb|EFN93898.1| signal recognition particle-docking protein FtsY [Mobiluncus
           mulieris FB024-16]
          Length = 642

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 10/312 (3%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
                S +R+L +  A    K    I  ++S   L++   E LED L+ +D GV    ++
Sbjct: 332 PESKTSRLRRLKERLAG-KGKFGRAILGVLSRADLEESDWEALEDELLSADFGVEATLEL 390

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHR----PHVILVVGVN 120
           +E+L TK+        + +  +++ +    +    ++  N D           +L+VGVN
Sbjct: 391 IEKLKTKQKVIGTKSAKEVRRMAKRMIGDFLDRHANRDLNLDVPEGHEGNTVGVLIVGVN 450

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT +GKL++ +      V+L A DTFR+AA +QL+ W        + SE   +D A
Sbjct: 451 GGGKTTTVGKLARFLVANRKSVVLGAADTFRAAAGEQLETWGSHVGVPVIRSEKDKADPA 510

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A K A+    DV++IDTAGRL N + LM  +GK+ RV ++  P     VL V+DA
Sbjct: 511 SVAFDAAKAARDNSADVVLIDTAGRLQNKAGLMDELGKIKRVAEKQVP--ITEVLLVIDA 568

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q ++F    G TG+++TK+DG+A+GG ++ +     IPV  +G+GEG +DL 
Sbjct: 569 TTGQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVVVALQRELGIPVKLVGLGEGPDDLA 628

Query: 300 PFVAKDFSAVIT 311
           PFV  DFS  + 
Sbjct: 629 PFVPGDFSDALL 640


>gi|77464634|ref|YP_354138.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodobacter
           sphaeroides 2.4.1]
 gi|77389052|gb|ABA80237.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodobacter
           sphaeroides 2.4.1]
          Length = 505

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   L+ +D+ + VA+  V+++  K   
Sbjct: 2   FESLSERLGGVFERLTKQGSLTEDDVATALREVRVALLEADVSLPVARDFVKKVQEKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L    +       + P  IL+VG+ G GKTT   KL
Sbjct: 62  QGVTKSVTPGQQVVKIVHDELVSVLRGEGEADALKIDNPPATILMVGLQGSGKTTTTAKL 121

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++    G +V++A+ DT R AA++QL+I   +   D +    G  A  +A  A  Q  
Sbjct: 122 AKRLAERQGKRVLMASLDTNRPAAMEQLQILGAQIGVDTLPIVKGESAVQIAKRAKTQGA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGRLH + +LM  +  +       D   P   L V+D  TGQ+A+    
Sbjct: 182 MGGYDVIMLDTAGRLHIDEVLMDEVQAV------RDLAQPRETLLVVDGLTGQDAVNVAA 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  I
Sbjct: 236 EFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|227875975|ref|ZP_03994098.1| signal recognition particle receptor [Mobiluncus mulieris ATCC
           35243]
 gi|227843507|gb|EEJ53693.1| signal recognition particle receptor [Mobiluncus mulieris ATCC
           35243]
          Length = 653

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 10/312 (3%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
                S +R+L +  A    K    I  ++S   L++   E LED L+ +D GV    ++
Sbjct: 343 PESKTSRLRRLKERLAG-KGKFGRAILGVLSRADLEESDWEALEDELLSADFGVEATLEL 401

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHR----PHVILVVGVN 120
           +E+L TK+        + +  +++ +    +    ++  N D           +L+VGVN
Sbjct: 402 IEKLKTKQKVIGTKSAKEVRRMAKRMIGDFLDRHANRDLNLDVPEGHEGNTVGVLIVGVN 461

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT +GKL++ +      V+L A DTFR+AA +QL+ W        + SE   +D A
Sbjct: 462 GGGKTTTVGKLARFLVANRKSVVLGAADTFRAAAGEQLETWGSHVGVPVIRSEKDKADPA 521

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A K A+    DV++IDTAGRL N + LM  +GK+ RV ++  P     VL V+DA
Sbjct: 522 SVAFDAAKAARDNSADVVLIDTAGRLQNKAGLMDELGKIKRVAEKQVP--ITEVLLVIDA 579

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q ++F    G TG+++TK+DG+A+GG ++ +     IPV  +G+GEG +DL 
Sbjct: 580 TTGQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVVVALQRELGIPVKLVGLGEGPDDLA 639

Query: 300 PFVAKDFSAVIT 311
           PFV  DFS  + 
Sbjct: 640 PFVPGDFSDALL 651


>gi|225012679|ref|ZP_03703114.1| signal recognition particle-docking protein FtsY [Flavobacteria
           bacterium MS024-2A]
 gi|225003212|gb|EEG41187.1| signal recognition particle-docking protein FtsY [Flavobacteria
           bacterium MS024-2A]
          Length = 317

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 130/303 (42%), Positives = 193/303 (63%), Gaps = 6/303 (1%)

Query: 15  RKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +KL  G A+T       + T ++   ++D+ V +ELE +LI+SD+GVA   KI++ L  +
Sbjct: 14  KKLEDGLANTKKSFLSRLGTAVVGKTKIDEDVLDELEAILIQSDVGVATTLKIIDALEAR 73

Query: 74  -RYAKDVSVQRVLYDVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVI 128
               K +  + ++  + E I ++L+         FN  FS +PHV++VVGVNGVGKTT +
Sbjct: 74  IARDKYLKTEDLIRMMQEEILELLVEADDDSRDGFNAKFSSKPHVVMVVGVNGVGKTTSV 133

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +    G KV+L A DTFR+ AIDQL++WADR S   V  E+GSD A++A++  + 
Sbjct: 134 GKLAHQYKTHGKKVILGAADTFRAGAIDQLQVWADRVSVPLVRQEMGSDPASVAFDTLQS 193

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A++ D++ IDTAGRLHN   LM  + K+ RV+ ++ P APH VL VLD +TGQNA  Q
Sbjct: 194 AKAQEADIVFIDTAGRLHNKINLMNELAKVKRVMSKVIPDAPHEVLLVLDGSTGQNAFEQ 253

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F A    + L +TK+DGTA+GG L+ I    +IPV ++GVGEGI D++ F  K+F  
Sbjct: 254 AKQFTAATEVSSLAITKLDGTAKGGVLLGISDQFQIPVKYIGVGEGIEDIQIFDRKEFIK 313

Query: 309 VIT 311
            + 
Sbjct: 314 TLF 316


>gi|73542631|ref|YP_297151.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ralstonia
           eutropha JMP134]
 gi|72120044|gb|AAZ62307.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ralstonia
           eutropha JMP134]
          Length = 462

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/310 (27%), Positives = 146/310 (47%), Gaps = 21/310 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   ++ +D+ + V +  +  +  K   
Sbjct: 2   LDNLTQRLARVVKTMRGEARLTEANTAEMLREVRLAMLEADVALPVVRDFIARVKEKAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLS----KPFNWDFS-HRPHVILVVGVNGVGKTT 126
           +DV       Q ++  V   +  ++        K    + +   P +IL+ G+ G GKTT
Sbjct: 62  EDVVSSLTPGQALVGVVQRELTTVIGGEEAISGKGAELNLAVQPPAIILMAGLQGAGKTT 121

Query: 127 VIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
            +GKL+K + +   K +   + D +R AAI QLK  +++  A+F  S+       +A  A
Sbjct: 122 TVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGAEFFPSQPDQKPVDIARAA 181

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+    DVLI+DTAGRL  +  +M  I  +   LK          L V+DA  GQ+A
Sbjct: 182 VDWARKHYHDVLIVDTAGRLGIDEAMMQEIAALHAELKPA------ETLFVVDAMLGQDA 235

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +   + F+     TG+++TK+DG ARGG  + +      P+ F+GVGE ++ LEPF    
Sbjct: 236 VNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHVTGRPIKFVGVGEKLDGLEPFYPDR 295

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 296 MAQRILGMGD 305


>gi|67459630|ref|YP_247254.1| Signal recognition particle-docking protein FtsY [Rickettsia felis
           URRWXCal2]
 gi|75535973|sp|Q4UK46|FTSY_RICFE RecName: Full=Cell division protein ftsY homolog
 gi|67005163|gb|AAY62089.1| Signal recognition particle-docking protein FtsY [Rickettsia felis
           URRWXCal2]
          Length = 303

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 129/303 (42%), Positives = 189/303 (62%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ +GI  I   ++LD    EELE+LLI SD+ V+V   I+EE 
Sbjct: 2   ISIFSKLKQSLSKTSNKISKGIDKIFYKKKLDTETLEELEELLIASDMSVSVVTNIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K++    V   ++ELI + L     PF  +  ++ +VILV GVNG GKTT IGK
Sbjct: 62  KKVKFDKEIDSDTVKEALAELIEQQLSKSEIPFTLN-ENKLNVILVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G KV +AA DTFR+AA++QL  W DR +A  +  E  +D A++AY A +++ 
Sbjct: 121 LAAMYGMQGKKVAVAACDTFRAAAVNQLSTWVDRANALLITGEESADPASVAYRAMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+DA TGQN   QVE
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVIDAITGQNTYNQVE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TGLI+TK+DG+A+ G L+ +V    +PVYF+G+GE I DL+ F   DF+  +
Sbjct: 241 HFNDATNLTGLIVTKLDGSAKAGVLVGVVQKFNLPVYFIGIGEKIEDLKIFNRHDFAKSL 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|168188032|ref|ZP_02622667.1| signal recognition particle protein [Clostridium botulinum C str.
           Eklund]
 gi|169294122|gb|EDS76255.1| signal recognition particle protein [Clostridium botulinum C str.
           Eklund]
          Length = 451

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 151/305 (49%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   + KL++ +  +    +L +  +++ + +    L+ +D+   + ++ V+    K  
Sbjct: 2   AFEGLAEKLQDTLKKLRGKGKLSEKDIKQAMREVKLALLEADVNYKIVRQFVKTTGEKCL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V++ + +++        +  +    VI++VG+ G GKTT+ GK
Sbjct: 62  GEEVMKSLTPGQQVVKIVNDELKELMGSTESKIEFS-NKGLTVIMLVGLQGAGKTTMAGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++     K +L A D +R AAI QL++   +                +A  + + A+
Sbjct: 121 LALQLRKNNKKPLLVACDIYRPAAIKQLQVVGKQIDVPVFSMGDKVSPVDIAKASIEHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRLH +  LM  +  +           P+ +L V+D+ TGQ+A+   E
Sbjct: 181 NNNNNVVIIDTAGRLHIDEALMEELENIK------ISVEPNEILLVVDSMTGQDAVNVSE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK+DG  RGG  + I      P+ ++G+GE +NDLE F     ++ I
Sbjct: 235 TFNNKLDISGVILTKLDGDTRGGAALSIKAVTGKPIKYVGLGEKMNDLEVFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|149915436|ref|ZP_01903963.1| signal recognition particle protein [Roseobacter sp. AzwK-3b]
 gi|149810725|gb|EDM70566.1| signal recognition particle protein [Roseobacter sp. AzwK-3b]
          Length = 507

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 154/305 (50%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +     L DD V+  L +    L+ +D+ + VA+  ++++  +   
Sbjct: 2   FENLSDRLSGVLDRLTKQGALSDDDVKTALREVRVALLEADVSLPVARDFIKKVQDQATG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + + + L    +P      + P  IL+VG+ G GKTT   KL
Sbjct: 62  QAVTRSVTPGQQVVKIVHDALVETLTGEGEPGALKIDNPPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ D  G +V++A+ D  R AA++QL+I   +   D +    G D   +A  A  QA 
Sbjct: 122 AKRLKDRDGKRVLMASLDVNRPAAMEQLEILGRQIGVDTLPIVKGEDPVTIAKRAKTQAS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH ++ L+A    +       D   P   L V+D  TGQ+A+   E
Sbjct: 182 LGGYDVYLLDTAGRLHIDADLIAQAAAV------RDVANPRETLLVVDGLTGQDAVNVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  I
Sbjct: 236 EFDDKIGVSGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGLGEKMDALETFEPERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|332559527|ref|ZP_08413849.1| signal recognition particle protein [Rhodobacter sphaeroides WS8N]
 gi|332277239|gb|EGJ22554.1| signal recognition particle protein [Rhodobacter sphaeroides WS8N]
          Length = 505

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   L+ +D+ + VA+  V+++  K   
Sbjct: 2   FESLSERLGGVFERLTKQGALTEDDVATALREVRVALLEADVSLPVARDFVKKVQEKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L    +       + P  IL+VG+ G GKTT   KL
Sbjct: 62  QGVTKSVTPGQQVVKIVHDELVSVLRGEGEADALKIDNPPATILMVGLQGSGKTTTTAKL 121

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++    G +V++A+ DT R AA++QL+I   +   D +    G  A  +A  A  Q  
Sbjct: 122 AKRLAERQGKRVLMASLDTNRPAAMEQLQILGAQIGVDTLPIVKGESAVQIAKRAKTQGS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGRLH + +LM  +  +       D   P   L V+D  TGQ+A+    
Sbjct: 182 MGGYDVIMLDTAGRLHIDEVLMDEVQAV------RDLAQPRETLLVVDGLTGQDAVNVAA 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  I
Sbjct: 236 EFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|312864560|ref|ZP_07724791.1| signal recognition particle-docking protein FtsY [Streptococcus
           downei F0415]
 gi|311099687|gb|EFQ57900.1| signal recognition particle-docking protein FtsY [Streptococcus
           downei F0415]
          Length = 561

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 115/310 (37%), Positives = 176/310 (56%), Gaps = 3/310 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           + ++   +   K  +    T       +    ++ RR+D+   E+LE++LI SD+GV VA
Sbjct: 248 EASTTQETEQDKYNRSLKKTRTGFGARLNAFFANFRRVDEEFFEDLEEMLILSDVGVQVA 307

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             + EEL  +   ++      +  V   +L+             +F     V+L VGVNG
Sbjct: 308 TNLTEELRYEVKLENAKKTEDVRRVVIEKLVDIYEKDGQFKETINFQDGLTVMLFVGVNG 367

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ K  + G KVML A DTFR+ A+ QL+ W +R     +     +D A++
Sbjct: 368 VGKTTSIGKLAYKYKNQGKKVMLVAADTFRAGAVAQLQEWGNRVGVPVITGPEKADPASV 427

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++  ++A A+ VD+L+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+T
Sbjct: 428 VFDGMEKAVAQGVDILMIDTAGRLQNKENLMAELEKIGRIVKRVLPDAPHETLLALDAST 487

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + F  +   TGL++TK+DGTA+GG ++ I     IPV F+G GE I+D+  F
Sbjct: 488 GQNALSQAKEFSKITPLTGLVLTKIDGTAKGGIVLAIRQELDIPVKFIGFGEKIDDIGEF 547

Query: 302 VAKDFSAVIT 311
            +++F   + 
Sbjct: 548 HSEEFMQGLL 557


>gi|310814616|ref|YP_003962580.1| signal recognition particle protein [Ketogulonicigenium vulgare
           Y25]
 gi|308753351|gb|ADO41280.1| signal recognition particle protein [Ketogulonicigenium vulgare
           Y25]
          Length = 501

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +   E    E+   L+ +D+ + V ++ V+ +  K   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSEADVESALREVRTALLEADVSLPVVREFVKAVSKKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  ML   + P        P  IL+VG+ G GKTT   KL
Sbjct: 62  QAVTKSITPGQQVVKIVHDELIAMLAGDTDPGVLKIDSPPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++    G +V+LA+ DT R AA++QL I   +   D +    G D  A+A  A  QA 
Sbjct: 122 ARRLKDREGKRVLLASLDTNRPAAMEQLAILGTQIGVDTLPIVKGEDPIAIAKRAKTQAS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV I+DTAGRLH ++ L+A    +  V+       P   L V+D  TGQ+A+    
Sbjct: 182 LGGYDVYILDTAGRLHIDAELIAQAAAVRDVVS------PRETLLVVDGLTGQDAVNVAT 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A  G TG+++T+MDG  RGG  + +      P+ F+G+GE  + LE F A   +  I
Sbjct: 236 EFDAKIGVTGVVLTRMDGDGRGGAALSMRAITGKPIRFIGLGEKTDALEVFDANRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|45360609|ref|NP_988977.1| signal recognition particle 54kDa [Xenopus (Silurana) tropicalis]
 gi|38174419|gb|AAH61368.1| signal recognition particle 54 [Xenopus (Silurana) tropicalis]
          Length = 504

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCKALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      +P+VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKPNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +AYE  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVNIAYEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L+  +   P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIVIVDTSGRHKQEDSLFEEM------LQVSNAVQPDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|237742006|ref|ZP_04572487.1| signal recognition particle receptor FtsY [Fusobacterium sp.
           4_1_13]
 gi|229429654|gb|EEO39866.1| signal recognition particle receptor FtsY [Fusobacterium sp.
           4_1_13]
          Length = 344

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 117/297 (39%), Positives = 181/297 (60%), Gaps = 3/297 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +++    +       + +I +S+ ++DD + EELEDLL++SD+G+ +   ++ +L  +  
Sbjct: 48  ISQRLTKSKEGFFSKLKNIFTSKSKVDDSIYEELEDLLLQSDVGLTMTTNLINQLEKEVK 107

Query: 76  AKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           A  V     +Y  +  L+ + L+          +++ +VIL+VGVNGVGKTT IGKL+ K
Sbjct: 108 ANKVDNTEKVYEILKRLMSEFLLSQDSKIYLK-NNKINVILIVGVNGVGKTTTIGKLALK 166

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             + G KV+L AGDTFR+AA++QL+ WA R   D V    G+D A++ Y+   +A++ K 
Sbjct: 167 YKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADPASVVYDTLSKAESTKA 226

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D TTGQN L Q + F++
Sbjct: 227 DVVIIDTAGRLHNKTNLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAKEFNS 286

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL  F AKDF   I 
Sbjct: 287 VTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLIEFNAKDFVEAIF 343


>gi|257063723|ref|YP_003143395.1| signal recognition particle-docking protein FtsY [Slackia
           heliotrinireducens DSM 20476]
 gi|256791376|gb|ACV22046.1| signal recognition particle-docking protein FtsY [Slackia
           heliotrinireducens DSM 20476]
          Length = 304

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 115/304 (37%), Positives = 170/304 (55%), Gaps = 5/304 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +SW  ++  G + +  K +E I  +  S   +DD   + LE+ LI SD+G   A KIVEE
Sbjct: 1   MSWFDRMKAGLSKSREKFQESINVLTFSGPDVDDDFWDNLEETLIMSDMGARAATKIVEE 60

Query: 70  LLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +      K ++    + DV  + I             D    P  +L+VGVNG GKTT  
Sbjct: 61  MKDTTQRKALANADAIMDVLCDRIADTFTVAKDGEGLD--QDPLCLLLVGVNGSGKTTTA 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++ +    G  V+L A DTFR+AAI+QL+ WA R+    V  E GSD A++ YE  + 
Sbjct: 119 GKMAAEAKGNGKTVVLGAADTFRAAAIEQLEEWARRSDVTIVERERGSDPASVCYETLEV 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ +  D++++DTAGRLH ++ LM  + K+  V+++     P   + V+DATTGQN L Q
Sbjct: 179 AEREGADLVVVDTAGRLHTSADLMRELQKVTSVVRKR-AACPVMTVLVIDATTGQNGLVQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F+      G+I+TK+DGTA+GG  + I     +P+  +GVGEGI DL  F A DF+ 
Sbjct: 238 ARTFNDALDLDGVIVTKLDGTAKGGIALAISYELGLPILKIGVGEGIEDLRDFDAHDFAR 297

Query: 309 VITG 312
            +TG
Sbjct: 298 ALTG 301


>gi|157804145|ref|YP_001492694.1| 50S ribosomal protein L32 [Rickettsia canadensis str. McKiel]
 gi|157785408|gb|ABV73909.1| 50S ribosomal protein L32 [Rickettsia canadensis str. McKiel]
          Length = 303

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 125/303 (41%), Positives = 191/303 (63%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +  + TS K+ EGI  I   ++L++   EELE+LLI SD+ V+V   I+EEL
Sbjct: 2   ISIFSKLKQSLSKTSNKISEGIDKIFYKKKLNEETLEELEELLISSDMSVSVVTNIIEEL 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ +++    V   +++LI + L+    PF+ D +++ +V+LV GVNG GKTT IGK
Sbjct: 62  KKVKFNEEIDSSTVKAALAKLIEEQLLNSEIPFSLD-ANKLNVVLVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+   S  G K+ +AA DTFR+AA++QL I  DR +A  +  E  +D A++AY   +++ 
Sbjct: 121 LAAMYSAQGKKIAVAACDTFRAAAVNQLSILIDRANALLITGEESADPASVAYRGMEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D+L IDTAGRLHN   LM  + K+++V+K+LD   P   + V+DA TGQN   Q E
Sbjct: 181 KQNIDILFIDTAGRLHNKKNLMDELTKIVKVIKKLDESTPTHSILVIDAITGQNTYNQAE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TGLI+TK+DG+A+ G ++ +V    +PVYF+G+GE I DL+ F   DF+  +
Sbjct: 241 HFHNATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPVYFIGIGEKIEDLKIFDRHDFAKSL 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|194290777|ref|YP_002006684.1| signal recognition particle (srp) component with 4.5S RNA (ffs)
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224612|emb|CAQ70623.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Cupriavidus taiwanensis LMG 19424]
          Length = 464

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/312 (27%), Positives = 146/312 (46%), Gaps = 23/312 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   ++ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTQRLARVVKTMRGEARLTEANTAEMLREVRLAMLEADVALPVVREFVARVKEKAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLS------KPFNWDFS-HRPHVILVVGVNGVGK 124
           ++V       Q ++  V   +  ++          K    + +   P +IL+ G+ G GK
Sbjct: 62  EEVVSSLTPGQALVGVVQRELTAVIGGAEAASGNNKESELNLAVQPPAIILMAGLQGAGK 121

Query: 125 TTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT  GKL+K + +   K +   + D +R AAI QLK  +++  A+F  S+       +A 
Sbjct: 122 TTTAGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGAEFFPSQPDQKPVDIAR 181

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A   A+    DVLI+DTAGRL  +  +M  I  +   LK          L V+DA  GQ
Sbjct: 182 AAVDWARKHYHDVLIVDTAGRLGIDEAMMQEIAALHAELKPA------ETLFVVDAMLGQ 235

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A+   + F+     TG+++TK+DG ARGG  + +      P+ F+GVGE ++ LEPF  
Sbjct: 236 DAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGRPIKFVGVGEKLDGLEPFYP 295

Query: 304 KDFSAVITGCLD 315
              +  I G  D
Sbjct: 296 DRMAQRILGMGD 307


>gi|113869195|ref|YP_727684.1| signal recognition particle GTPase [Ralstonia eutropha H16]
 gi|113527971|emb|CAJ94316.1| signal recognition particle GTPase [Ralstonia eutropha H16]
          Length = 464

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/312 (27%), Positives = 150/312 (48%), Gaps = 23/312 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   ++ +D+ + V ++ V  +  K   
Sbjct: 2   LDNLTQRLARVVKTMRGEARLTEANTAEMLREVRLAMLEADVALPVVREFVARVKEKAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPL------SKPFNWDFS-HRPHVILVVGVNGVGK 124
           ++V       Q ++  V   +  ++         +K    + +   P +IL+ G+ G GK
Sbjct: 62  EEVVSSLTPGQALVGVVQRELTAVIGGADAASGNNKEAELNLAVQPPAIILMAGLQGAGK 121

Query: 125 TTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT +GKL+K + +   K +   + D +R AAI QLK  +++  ADF  S+     A +A 
Sbjct: 122 TTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFPSQPDQKPADIAR 181

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A   A+    DVLI+DTAGRL  + ++M  I  +   LK          L V+DA  GQ
Sbjct: 182 AAVDWARKHYHDVLIVDTAGRLGIDELMMQEIAALHAELKPA------ETLFVVDAMLGQ 235

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A+   + F+     TG+++TK+DG ARGG  + +      P+ F+GVGE ++ LEPF  
Sbjct: 236 DAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGRPIKFVGVGEKLDGLEPFYP 295

Query: 304 KDFSAVITGCLD 315
              +  I G  D
Sbjct: 296 DRMAQRILGMGD 307


>gi|332523258|ref|ZP_08399510.1| signal recognition particle-docking protein FtsY [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314522|gb|EGJ27507.1| signal recognition particle-docking protein FtsY [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 499

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 117/315 (37%), Positives = 181/315 (57%), Gaps = 4/315 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           ++ ++V +E  +   K  +    T       +   +++ R +D+   EELE++LI SD+G
Sbjct: 183 VAEEQVHTEESNQ-EKYDRSLKKTRSGFASRLNAFLANFRSVDEEFFEELEEMLILSDVG 241

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           V VA  + ++L  +   ++     VL    + +L+       +     ++ +   V+L V
Sbjct: 242 VTVATTLTDQLRQEAKLENAKKPEVLRRVIIEKLVAIYEKDGNYNEKINYQNNLTVMLFV 301

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 302 GVNGVGKTTSIGKLAYRYKSEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGSEKAD 361

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  L
Sbjct: 362 PASVVFDGVEKAVAENIDILLIDTAGRLQNKENLMAELEKMGRIIKRVIPDAPHETLLAL 421

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D
Sbjct: 422 DASTGQNALSQAKEFSKIMPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDD 481

Query: 298 LEPFVAKDFSAVITG 312
           +  F +++F   + G
Sbjct: 482 IGEFDSEEFMKGLLG 496


>gi|22536891|ref|NP_687742.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae 2603V/R]
 gi|25010804|ref|NP_735199.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae NEM316]
 gi|76798202|ref|ZP_00780453.1| cell division protein FtsY [Streptococcus agalactiae 18RS21]
 gi|77406417|ref|ZP_00783476.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae H36B]
 gi|77410752|ref|ZP_00787110.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae CJB111]
 gi|22533741|gb|AAM99614.1|AE014224_17 signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae 2603V/R]
 gi|23095158|emb|CAD46393.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586465|gb|EAO62972.1| cell division protein FtsY [Streptococcus agalactiae 18RS21]
 gi|77163131|gb|EAO74084.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae CJB111]
 gi|77174981|gb|EAO77791.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae H36B]
          Length = 536

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 177/312 (56%), Gaps = 3/312 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           +Q    ++ S   K  +    T       +   +S+ RR+D+   EELE++LI SD+GV 
Sbjct: 221 SQADTIKAESQEEKYNRSLKKTRTGFSARLNAFLSNFRRVDEEFFEELEEMLILSDVGVN 280

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           VA ++ E+L  +   ++      L    V +L+             +F     V+L VGV
Sbjct: 281 VATQLTEDLRYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V  E  +D A
Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEEKADPA 400

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA
Sbjct: 401 SVVFDGMEKAVAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+ 
Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIG 520

Query: 300 PFVAKDFSAVIT 311
            F ++DF   + 
Sbjct: 521 EFNSEDFMRGLL 532


>gi|146276232|ref|YP_001166391.1| signal recognition particle protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554473|gb|ABP69086.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 501

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   L+ +D+ + VA+  V+ +  K   
Sbjct: 2   FESLSERLGGVFERLTKQGALTEDDVATALREVRVALLEADVSLPVARDFVKRVQEKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L            + P  IL+VG+ G GKTT   KL
Sbjct: 62  QGVTKSVTPGQQVVKIVHDELVTVLRGEGPADALKIDNPPATILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++S   G +V++A+ DT R AA++QL+I   +   D +    G  A  +A  A  Q  
Sbjct: 122 AKRLSEKQGKRVLMASLDTNRPAAMEQLQILGAQIGVDTLPIVKGETAVQIAKRAKTQGS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGRLH + +LM  +  +       D   P   L V+D  TGQ+A+    
Sbjct: 182 MGGYDVIMLDTAGRLHIDEVLMDEVQAV------RDLAQPRETLLVVDGLTGQDAVNVAA 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F     +  I
Sbjct: 236 EFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPDRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|157881430|pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
 gi|157881431|pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
          Length = 297

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 141/304 (46%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + V +  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V       + +L  V E + + L   ++          ++  +VG+ G GKTT   KL
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEAR---LPVLKDRNLWFLVGLQGSGKTTTAAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL++  ++     +    G    ++     ++A+ 
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL     
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  +  I 
Sbjct: 233 FDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|218961112|ref|YP_001740887.1| Cell division protein FtsY [Candidatus Cloacamonas acidaminovorans]
 gi|167729769|emb|CAO80681.1| Cell division protein FtsY [Candidatus Cloacamonas acidaminovorans]
          Length = 324

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 179/309 (57%), Gaps = 5/309 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKI 66
            + L+ ++ L +  A T+      IT+ +  R++ D+ +  E+E++L+  D G+ +   I
Sbjct: 14  KKVLNIVKNLKEKLAKTNSNFMGKITETVKKRKVVDEEMLAEIEEILLSCDTGIEMTDII 73

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKP---FNWDFSHRPHVILVVGVNGV 122
           +     +     V+   +    +++++  +L+  ++    F  +   +P+V++ VGVNG 
Sbjct: 74  LTRFKEQLKKDKVTDPEIAQIYLTDVMRDILLAENEETPDFFAEPQAKPYVVVFVGVNGT 133

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGK++ K +  G KV++ AGDTFR+AAI+Q+ IWA+R     V S+  SD AA+ 
Sbjct: 134 GKTTTIGKVAYKFNQMGKKVLIVAGDTFRAAAIEQIAIWAERAGVPIVRSQPDSDPAAII 193

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+    A A+  DV++IDTAGR H    LM  + K+ R +++L P APH V+ V+DATTG
Sbjct: 194 YDGVHSALARGYDVVLIDTAGRQHTKDNLMKELTKIERTIQKLIPDAPHEVILVVDATTG 253

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNA+ Q   F      TG+ +TK DGT++GG +  +    ++PV  LGVGEGI DL PF 
Sbjct: 254 QNAVSQAHNFDKAMKLTGIALTKYDGTSKGGIIFNLKYNLQLPVKLLGVGEGIEDLLPFK 313

Query: 303 AKDFSAVIT 311
           A  F     
Sbjct: 314 AVPFVKAFF 322


>gi|68171797|ref|ZP_00545138.1| Cell division transporter substrate-binding protein FtsY [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88657689|ref|YP_507895.1| signal recognition particle-docking protein FtsY [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67998779|gb|EAM85490.1| Cell division transporter substrate-binding protein FtsY [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|88599146|gb|ABD44615.1| signal recognition particle-docking protein FtsY [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 310

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 123/302 (40%), Positives = 196/302 (64%), Gaps = 4/302 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             +   + KG   TS KL +GI  I S  +++D    EEL++LLI +D+G   A  + ++
Sbjct: 7   KGFFSNIKKGLFKTSSKLSDGIKKIFSSGKKVDQETLEELKELLITADVGYDNASLLTQK 66

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L + ++  ++    V   ++E I  +L+ + KP     +++PHVI+V G NG GKTT IG
Sbjct: 67  LASTKF-NEMDDNTVKQKLAESIENILLQVEKPL--SINNKPHVIMVCGTNGNGKTTTIG 123

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +  + G KV++AA DTFR+AA +QL +W+ + +   V    G+DAA++AY+A +QA
Sbjct: 124 KLAHRFKNTGKKVLVAACDTFRAAATEQLIVWSQKVNFPVVTGNQGADAASIAYQAMQQA 183

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             ++ DVL+IDTAGRLHN+  LM  + K+ R++ + D +APH V+ +LDATTGQNA+ QV
Sbjct: 184 LNEQTDVLLIDTAGRLHNHKNLMEELAKIRRIINKHDNNAPHDVILILDATTGQNAVNQV 243

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      +GLI+TK+DGTA+GG +I I   +K+ ++ +G+GE +  L+ F AK+F+A 
Sbjct: 244 DAFLQFVNISGLIITKLDGTAKGGVVIRIAQKYKLNIHAIGIGESVEQLQDFSAKEFAAG 303

Query: 310 IT 311
           + 
Sbjct: 304 LL 305


>gi|316975692|gb|EFV59096.1| signal recognition protein [Trichinella spiralis]
          Length = 492

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    K++  I  +  +  +++ V     +E+   L+ +D+ + + +++ E + ++   
Sbjct: 3   LAELGRKIRNAIGSLSHATIINEEVLTSMLKEVCTALLEADVNIRLVKQLRESVKSQINL 62

Query: 77  KDVSVQRVLYD-----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++++            V + + K++ P  K +      RP+VI+ VG+ G GKTT   KL
Sbjct: 63  EEMAAGMNKRRLIQRVVFQELVKLVDPGVKQWQ-PTKGRPNVIMFVGLQGCGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G+K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYYYQKRGMKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVVIAAEGVEKFKQ 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L+  +   P +V+ V+DA+ GQ    Q   
Sbjct: 182 ENFEIIIVDTSGRHKQEESLFEEM------LQVANTVQPDNVIYVMDASIGQACEAQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH       +I+TK+DG ARGGG +  V     P+ F+G GE I+D EPF  K F   + 
Sbjct: 236 FHEKVDVASVIVTKLDGHARGGGALSAVAATGSPIIFIGTGEHIDDFEPFKVKPFVQKLL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDL 300


>gi|26354843|dbj|BAC41048.1| unnamed protein product [Mus musculus]
          Length = 502

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      +P+VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNQRKMIQHAVFKELVKLVDPGVKAWT-PTKGKPNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ Q 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATQARIPFYGSYTEMDPVIIASEGVEKFQN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHQQEDSLFEEMLQVSNAIQ------PDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I++ EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDNFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|281411789|ref|YP_003345868.1| signal recognition particle-docking protein FtsY [Thermotoga
           naphthophila RKU-10]
 gi|281372892|gb|ADA66454.1| signal recognition particle-docking protein FtsY [Thermotoga
           naphthophila RKU-10]
          Length = 294

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 130/301 (43%), Positives = 175/301 (58%), Gaps = 9/301 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +     L KG   T       +  ++  ++LDD  REELE+LLI++D+GV   + I+E L
Sbjct: 1   MGLFDFLKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K           L  + E+I ++L       N      P VI+VVGVNG GKTT  GK
Sbjct: 61  EEK-------DGDALESLKEIILEIL-NFDTKLNVP-PEPPFVIMVVGVNGTGKTTSCGK 111

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K   D G  V+LAA DTFR+AAI+QLKIW +R  A  +    G+D AA+A++A   A 
Sbjct: 112 LAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHAL 171

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DV+IIDTAGRLH    LM  + K+ RV+K+  P APH  L V+DATTGQN L Q +
Sbjct: 172 ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAK 231

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F      TG+I+TK+DGTA+GG  + I     IP+ F+GVGE   DL PF  + F  V+
Sbjct: 232 IFKEAVNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVL 291

Query: 311 T 311
            
Sbjct: 292 I 292


>gi|227824340|ref|ZP_03989172.1| signal recognition particle-docking protein ftsY [Acidaminococcus
           sp. D21]
 gi|226904839|gb|EEH90757.1| signal recognition particle-docking protein ftsY [Acidaminococcus
           sp. D21]
          Length = 304

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 122/304 (40%), Positives = 182/304 (59%), Gaps = 5/304 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S++ +L +G   T     E + D++  S  LD+   +ELE +L+  D+G+   +KI++ 
Sbjct: 1   MSFVEELRQGLEKTRKNFTERMEDLVGISVDLDEDFMDELEMILVAGDVGIKTTEKIMQA 60

Query: 70  LLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      +++ S    L  + + I  ML    K    +F   P ++LVVGVNGVGKTT I
Sbjct: 61  LRKAAATREIKSPAEALPFIKQYIADMLT--VKGPRMNFKGHPTIVLVVGVNGVGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFK 187
           GKL+      G KVM AA DTFR+ A++QLKIW ++     +   +IG+D AA+ Y+  K
Sbjct: 119 GKLANYYRLMGYKVMCAAADTFRAGAVEQLKIWGEKAQVPVISHGDIGADPAAVVYDGVK 178

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A+ +DVL +DTAGRLHN + LM  + KM RV+++  P  PH  L VLDATTGQNA+ 
Sbjct: 179 AAMARHIDVLFVDTAGRLHNKTNLMKELDKMYRVIRKEVPDGPHETLLVLDATTGQNAIT 238

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q ++F   A  TG+++TK+DGTA+GG ++ I     + V ++G+GEG+ D  PF  K F 
Sbjct: 239 QAKIFLETAHVTGVVLTKLDGTAKGGVVVAIKEELGLDVKWIGIGEGMMDFRPFDPKVFV 298

Query: 308 AVIT 311
             + 
Sbjct: 299 DALF 302


>gi|157115970|ref|XP_001652739.1| signal recognition particle 54 kda protein [Aedes aegypti]
 gi|108876679|gb|EAT40904.1| signal recognition particle 54 kda protein [Aedes aegypti]
          Length = 357

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++ V +    E+   L+ +D+ + + +K+ E + +    
Sbjct: 3   LADLGRKITNALHSLSKATIINEEVLDSMLKEICTALLEADVNIRLVKKLRENVKSVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      RP+VI+ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQ-PVKGRPNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +     + 
Sbjct: 122 AYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVVIAQDGVDMFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  + +I+DT+GR      L   +  +   +K      P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEFIIVDTSGRHKQEESLFEEMLAVATAVK------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKEKVDIGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKTKPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|87123338|ref|ZP_01079189.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           RS9917]
 gi|86169058|gb|EAQ70314.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           RS9917]
          Length = 473

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 174/312 (55%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V+ E + W+ +L +G   T       + + +    L   V ++LE LL+R+D GV    
Sbjct: 159 QVSLEEIDWLGRLRRGLEKTRQGFVTSLLETLGDDPLTPEVVDDLEALLLRADAGVQATD 218

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVN 120
           +++E L  +   + V     +  + E +  +L    +    +       R ++ L+VGVN
Sbjct: 219 QVMEALRRRLNEEVVDPGEGIRFLKEQLRGLLEQPIQASGVELLAPERGRLNIWLMVGVN 278

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           GVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+ +WA+R+    + +    +D A
Sbjct: 279 GVGKTTTLGKLANLAVRSGYSALVAAADTFRAAAVQQVTVWAERSEVPVISNPSANADPA 338

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A++K VD+L++DTAGRL     LM  + K+ R++ RL P A    L VLDA
Sbjct: 339 AVVFDAIGAARSKGVDLLLVDTAGRLQTKHNLMEELQKIRRIVDRLAPEARVESLLVLDA 398

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN L+Q   F   A  TG+++TK+DGTARGG  + +     +P+ F+G GEGI DL 
Sbjct: 399 SQGQNGLKQAMAFAKAADLTGVVITKLDGTARGGVALAVASEAGLPIRFIGAGEGIRDLR 458

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 459 PFNSFEFVEALL 470


>gi|126463474|ref|YP_001044588.1| signal recognition particle protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105138|gb|ABN77816.1| signal recognition particle subunit FFH/SRP54 (srp54) [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 505

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   L+ +D+ + VA+  V+++  K   
Sbjct: 2   FESLSERLGGVFERLTKQGALTEDDVATALREVRVALLEADVSLPVARDFVKKVQEKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L    +       + P  IL+VG+ G GKTT   KL
Sbjct: 62  QGVTKSVTPGQQVVKIVHDELVSVLRGEGEADALKIDNPPATILMVGLQGSGKTTTTAKL 121

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++    G +V++A+ DT R AA++QL+I   +   D +    G  A  +A  A  Q  
Sbjct: 122 AKRLAERQGKRVLMASLDTNRPAAMEQLQILGAQIGVDTLPIVKGESAVQIAKRAKTQGA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGRLH + +LM  +  +       D   P   L V+D  TGQ+A+    
Sbjct: 182 MGGYDVIMLDTAGRLHIDEVLMDEVQAV------RDLAQPRETLLVVDGLTGQDAVNVAA 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  I
Sbjct: 236 EFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|306819256|ref|ZP_07452967.1| cell division protein FtsY [Mobiluncus mulieris ATCC 35239]
 gi|304648038|gb|EFM45352.1| cell division protein FtsY [Mobiluncus mulieris ATCC 35239]
          Length = 653

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 10/312 (3%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
                S +R+L +  A    K    I  ++S   L++   E LED L+ +D GV    ++
Sbjct: 343 PESKTSRLRRLKERLAG-KGKFGRAILGVLSRADLEESDWEALEDELLSADFGVEATLEL 401

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHR----PHVILVVGVN 120
           +E+L TK+        + +  +++ +    +    ++  N D           +L+VGVN
Sbjct: 402 IEKLKTKQKVIGTKSAKEVRRMAKRMIGDFLDRHANRDLNLDVPEGHEGNTVGVLIVGVN 461

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT +GKL++ +      V+L A DTFR+AA +QL+ W        + SE   +D A
Sbjct: 462 GGGKTTTVGKLARFLVANRKSVVLGAADTFRAAAGEQLETWGSHVGVPVIRSEKDKADPA 521

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A K A+    DV++IDTAGRL N + LM  +GK+ RV ++  P     VL V+DA
Sbjct: 522 SVAFDAAKAARDNSADVVLIDTAGRLQNKAGLMDELGKIKRVAEKQVP--ITEVLLVIDA 579

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q ++F    G TG+++TK+DG+A+GG ++ +     IPV  +G+GEG +DL 
Sbjct: 580 TTGQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVVVALQRELGIPVKLVGLGEGPDDLA 639

Query: 300 PFVAKDFSAVIT 311
           PFV  DFS  + 
Sbjct: 640 PFVPGDFSDALL 651


>gi|300690374|ref|YP_003751369.1| signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Ralstonia solanacearum PSI07]
 gi|299077434|emb|CBJ50060.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Ralstonia solanacearum PSI07]
          Length = 479

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/325 (26%), Positives = 148/325 (45%), Gaps = 36/325 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   LDNLTQRLARVVKTMRGEARLTEANTAEMLREVRLALLEADVALPVVREFIARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLM-------------------PLSKPFNWDFS-HRP 111
           +DV       Q ++  V   +  ++                    P+ +    + +   P
Sbjct: 62  EDVISSLSPGQALVGIVQRELTAIIGGEEAVAAAAPGPAGVPAGLPMGRAAELNLNVQPP 121

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFV 170
            +IL+ G+ G GKTT +GKL+K + +   K +   + D +R AAI QLK  +++  ADF 
Sbjct: 122 AIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFF 181

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S+       +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK       
Sbjct: 182 PSQPEQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHAALKPA----- 236

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+G
Sbjct: 237 -ETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGAALSVRHITGKPIKFVG 295

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           V E ++ LEPF     +  I G  D
Sbjct: 296 VAEKLDGLEPFYPDRMAQRILGMGD 320


>gi|86132319|ref|ZP_01050914.1| signal recognition 54 kDa protein [Dokdonia donghaensis MED134]
 gi|85817238|gb|EAQ38421.1| signal recognition 54 kDa protein [Dokdonia donghaensis MED134]
          Length = 442

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 141/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL + +  +     + +       +E+   LI +D+    A++    +  K   
Sbjct: 2   FDNLSDKLDKALHVLKGHGSITEVNVAETLKEVRRALIDADVNFKTAKEFTNRVKQKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q ++  V + + +++   +   N   +  P +IL+ G+ G GKTT  GKL
Sbjct: 62  SDVLTTLQPGQLMVKIVKDELTELMGGDAAGINLSAT--PSIILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K  +L A D +R AAIDQL +  D+   D        +   +A +    A+
Sbjct: 120 ANFLKTKKTKKPLLVACDVYRPAAIDQLHVVGDQIKVDVYSDRDEKNPVKIAQDGIAFAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   +V+IIDTAGRL  +  +M  I  +   ++      P   L V+D+ TGQ+A+   +
Sbjct: 180 ANGHNVVIIDTAGRLAVDEAMMKEIADVHTAIQ------PQETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +    G+I+TK+DG  RGG  I I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 AFNDILNFDGVILTKLDGDTRGGAAISIKSVVDKPIKFIGTGEKMEAIDVFYPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|73667502|ref|YP_303518.1| signal recognition particle-docking protein FtsY [Ehrlichia canis
           str. Jake]
 gi|72394643|gb|AAZ68920.1| signal recognition particle-docking protein FtsY [Ehrlichia canis
           str. Jake]
          Length = 310

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 129/306 (42%), Positives = 198/306 (64%), Gaps = 7/306 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             ++  + KG   TS KL +GI  I S  +++D    EEL++LLI +D+G   A  + ++
Sbjct: 7   KGFLNNIKKGLFKTSSKLSDGIKKIFSSEKKIDQETLEELKELLITADVGYENASLLTQK 66

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L   ++  +V    V   ++E I  +L+ + KP     +++PHVI++ G NG GKTT IG
Sbjct: 67  LAEIKF-NEVDYSIVKQKLAESIEDILLQVEKPL--SINNKPHVIMICGTNGNGKTTTIG 123

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K  + G KV++AA DTFR+AA +QL +W+ + +   V    G+DAA++AY+A +QA
Sbjct: 124 KLAHKFKNEGKKVLVAACDTFRAAATEQLIVWSQKVNFPVVTGNQGADAASIAYQAMQQA 183

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              +VDVL+IDTAGRLHN+  LM  + K+ R++ + D +APH+V+ +LDATTGQNA+ QV
Sbjct: 184 LNDQVDVLLIDTAGRLHNHKNLMEELAKIKRIIGKHDNNAPHNVILILDATTGQNAIHQV 243

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F      +GLIMTK+DGTA+GG +I I   +K+ ++ +G+GE +  L+ F AK+F+  
Sbjct: 244 EAFSQFVNISGLIMTKLDGTAKGGVVIKIAQKYKLSIHAIGIGEHVEQLQDFSAKEFA-- 301

Query: 310 ITGCLD 315
             G LD
Sbjct: 302 -IGLLD 306


>gi|257791123|ref|YP_003181729.1| signal recognition particle-docking protein FtsY [Eggerthella lenta
           DSM 2243]
 gi|317488147|ref|ZP_07946722.1| signal recognition particle-docking protein FtsY [Eggerthella sp.
           1_3_56FAA]
 gi|257475020|gb|ACV55340.1| signal recognition particle-docking protein FtsY [Eggerthella lenta
           DSM 2243]
 gi|316912775|gb|EFV34309.1| signal recognition particle-docking protein FtsY [Eggerthella sp.
           1_3_56FAA]
          Length = 306

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 184/306 (60%), Gaps = 4/306 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  ++++G   +  K KE +  ++     LD+   + LE+ LI +D+G A A +IVE 
Sbjct: 1   MGFFDRISEGLTRSRDKFKEQMNVLLDRGPDLDEEFWDGLEETLILADVGGAAAAEIVEG 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +   K +     + D+     ++    ++        +P ++L VG+NG GKTT +G
Sbjct: 61  LRDQATRKALPDAYAVLDLLN--DQIASTFTEGGEDVLGGQPALVLFVGINGTGKTTTVG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K+ +DAG  V+L + DTFR+AAI+QL++WA+R + + V  E GSD A++ Y+  ++A
Sbjct: 119 KLAKEATDAGRTVILGSADTFRAAAIEQLEVWAERANVEVVTRERGSDPASVCYDTIERA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +++  D+++IDTAGRLH ++ LM  + K++ V+++      ++VL V DATTGQN L Q 
Sbjct: 179 ESRGADLVLIDTAGRLHTSADLMRELEKVVNVVRKRSQLPVYTVL-VTDATTGQNGLSQA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F       G+I+TK+DGTA+GG  + +     +PV  +GVGEG++DL  F A DF+  
Sbjct: 238 REFDRALDLDGVIVTKLDGTAKGGIALAVSHELGLPVLKIGVGEGLDDLRDFDAHDFARA 297

Query: 310 ITGCLD 315
           + G  D
Sbjct: 298 LVGEFD 303


>gi|153006211|ref|YP_001380536.1| signal recognition particle protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029784|gb|ABS27552.1| signal recognition particle protein [Anaeromyxobacter sp. Fw109-5]
          Length = 550

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/317 (29%), Positives = 152/317 (47%), Gaps = 24/317 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            +  ++KGF +   KLK      I+   +DD +R+ +   L+ +D+   V ++ V  +  
Sbjct: 1   MLETVSKGFKAARNKLKG--RTEITPEVVDDALRD-IRVSLLEADVSFDVVKRFVARVRE 57

Query: 73  KRYAKDVSVQ--------------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           K   + V  +                +    + +  ++ P+          RP  I++VG
Sbjct: 58  KAIGEVVDTKVKTEKGVVRVTPQDHFVKICHDELEALMGPVDTSLRHGERGRPTGIMMVG 117

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT  GK++ K+   G + +L A D +R AA+DQLK+  +R        E G   
Sbjct: 118 LQGSGKTTTAGKIASKLLKEGKRPLLVAADVYRPAAVDQLKVLGERLGVPVF-HEPGVSP 176

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +   AF+ A  +K +V+I DTAGRL  +  LM  + ++ R +      AP ++L V D
Sbjct: 177 PEMCRHAFEAAPREKANVVIYDTAGRLAVDEELMVELEEIKRHV------APENILLVAD 230

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A++    F       G I+TK+DG ARGG  + I      P+ FLG+GE ++ L
Sbjct: 231 AMIGQDAVKTAAEFDRRLALDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGESLDRL 290

Query: 299 EPFVAKDFSAVITGCLD 315
           E F  +  ++ I G  D
Sbjct: 291 EEFRPEGLASRILGFGD 307


>gi|83951198|ref|ZP_00959931.1| signal recognition particle protein [Roseovarius nubinhibens ISM]
 gi|83839097|gb|EAP78393.1| signal recognition particle protein [Roseovarius nubinhibens ISM]
          Length = 503

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L D+ V+  L +    L+ +D+ + VA+  +  +  +   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSDEDVKTALREVRVALLEADVSLPVARDFIARVQDQATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + + + L     P      + P  IL+VG+ G GKTT   KL
Sbjct: 62  QSVTKSVTPGQQVVKIVHDALVETLRGEGDPGALKIDNPPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G +V++A+ D  R AA++QL+I   +   D +    G D  A+A  A  QA 
Sbjct: 122 AKRLKERDGKRVLMASLDVNRPAAMEQLQILGQQIGVDTLPIVKGEDPVAIAKRAKTQAS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH ++ L+     +       D   P   L V+D  TGQ+A+    
Sbjct: 182 LGGYDVYMLDTAGRLHIDAELIQQAADV------RDVANPRETLLVVDGLTGQDAVNVAT 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F     +  I
Sbjct: 236 EFDDKIGVTGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPDRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|254303084|ref|ZP_04970442.1| cell division protein FtsY [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323276|gb|EDK88526.1| cell division protein FtsY [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 344

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 118/297 (39%), Positives = 180/297 (60%), Gaps = 3/297 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +++    +       + +I +S+ ++DD + EELEDLL++SD+G+++   ++ +L  +  
Sbjct: 48  ISQRLTKSKEGFFSKLKNIFTSKSKVDDSIYEELEDLLLQSDVGLSMTTNLINQLEKEVK 107

Query: 76  AKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           A  V     +Y  +  L+ + L+           ++ +VIL+VGVNGVGKTT IGKL+ K
Sbjct: 108 ANKVDNTDEVYEILKRLMSEFLLSQDSKIYLK-DNKINVILIVGVNGVGKTTTIGKLALK 166

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G KV+L AGDTFR+AA++QL+ WA R   D V    G+D A++ Y+   +A+A K 
Sbjct: 167 YKKLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADPASVVYDTLSRAEATKA 226

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D TTGQN L Q + F++
Sbjct: 227 DVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAKEFNS 286

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL  F AKDF   I 
Sbjct: 287 VTDLTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLIEFNAKDFVEAIF 343


>gi|325265086|ref|ZP_08131813.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           D5]
 gi|324029776|gb|EGB91064.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           D5]
          Length = 312

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 126/306 (41%), Positives = 179/306 (58%), Gaps = 4/306 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            E   + ++L  G   T   +  G+  I     ++DD   EELE+ LI  D+GV    +I
Sbjct: 2   EEKQGFFKRLVSGLTKTRDNIVSGMDSIFHGFSKIDDDFYEELEETLIMGDLGVHTTMEI 61

Query: 67  VEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E+L  K  A+ +         + E I + +        ++F  R  V+ V+GVNGVGKT
Sbjct: 62  IEDLKAKVKAQHIKEPIECRELLIESIKEQMN--VGETAYEFEDRTSVVFVIGVNGVGKT 119

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K  +   KV+LAA DTFR+AA +QLK WA+R   + +  + GSD A++ ++A
Sbjct: 120 TTIGKLAGKFHEQHKKVILAAADTFRAAAGEQLKEWANRAEVEMIGGQEGSDPASVVFDA 179

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K D+L+ DTAGRLHN   LM  + K+ RV+ R  P A    L VLDATTGQNA
Sbjct: 180 VAAARARKADILLCDTAGRLHNKKNLMEELKKINRVIDREYPEAHKETLVVLDATTGQNA 239

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q + F+ V+  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I DL+ F A +
Sbjct: 240 LSQAKEFNEVSDITGVILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIEDLQKFDADE 299

Query: 306 FSAVIT 311
           F   + 
Sbjct: 300 FVNALF 305


>gi|319409414|emb|CBI83060.1| signal recognition particle protein [Bartonella schoenbuchensis R1]
          Length = 520

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L   ++++     L D        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FESLQERLGSILSNLTGRGALSDQDVATALREIRRALLEADVALDVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +       Q V+  V + +  ML   +   + + +  P VI+++G+ G GKTT   KL
Sbjct: 62  SAIVKSIKPGQMVVKIVHDELVSMLGDEAVLSDLN-APAPVVIMLIGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+++D    KV++A+ DT R AA +QL+   ++     +    G  A  +   A + A+
Sbjct: 121 AKRLTDKHNKKVLMASLDTRRPAAQEQLRQLGEQAQLASLPIISGQSAVDITARAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGR H +  LM  + ++  +        PH ++ V D+ TGQ+A+    
Sbjct: 181 LGAYDVLLLDTAGRNHLDDALMIELAEIKAL------SLPHEIMLVADSLTGQDAVHLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+I+T+MD   RGG  + +      P+  +GVGE I+ LE F     +  I
Sbjct: 235 SFDERVGLTGIILTRMDSDGRGGAALSMRAVTGKPIKAIGVGEKIDALEEFHPHRIANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|292670931|ref|ZP_06604357.1| signal recognition particle-docking protein FtsY [Selenomonas noxia
           ATCC 43541]
 gi|292647552|gb|EFF65524.1| signal recognition particle-docking protein FtsY [Selenomonas noxia
           ATCC 43541]
          Length = 311

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 123/303 (40%), Positives = 181/303 (59%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L KG A T     + I   II    +DD + ++LE+ L+ +D+GV   + ++  
Sbjct: 1   MGFFDRLKKGLAKTRENFTQNIERLIIGYADIDDELIDDLEETLLMADVGVKTTEMLISA 60

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +      K++     L   + + I ++L    K F+      P V+LVVG NGVGKTT I
Sbjct: 61  VRKGIKEKEIQTPEDLIPFLEKEIVRILESGEKTFHM-AEQGPTVLLVVGTNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS      G  V+LAA DTFR+AAIDQL+IW  R  A  +     SD AA+ ++A + 
Sbjct: 120 GKLSAYYRRQGKSVLLAAADTFRAAAIDQLEIWGKRADAQVIKHGENSDPAAVVFDALQA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +D++I+DTAGRL   S LM  + K+ RV+ R  P APH  L VLDA TGQNA+ Q
Sbjct: 180 AKARNIDIVIVDTAGRLQTKSNLMQELEKIYRVIGREIPGAPHETLLVLDAGTGQNAISQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E+F   A  +G+++TK+DGTA+GG  I I     IP+ ++GVGEG++DL PF A++F +
Sbjct: 240 AEIFTQAAPVSGVVLTKLDGTAKGGVTIGIKSQLSIPIKWIGVGEGMDDLRPFHAEEFVS 299

Query: 309 VIT 311
            + 
Sbjct: 300 ALF 302


>gi|312131071|ref|YP_003998411.1| signal recognition particle-docking protein ftsy [Leadbetterella
           byssophila DSM 17132]
 gi|311907617|gb|ADQ18058.1| signal recognition particle-docking protein FtsY [Leadbetterella
           byssophila DSM 17132]
          Length = 318

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 119/304 (39%), Positives = 176/304 (57%), Gaps = 7/304 (2%)

Query: 15  RKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             L KG   +   + + +T  I+    +D+ V +ELE++LI SD+GV    KI+  +  +
Sbjct: 13  ESLDKGLEKSKTGIFDKLTKAIVGKSEVDEEVLDELEEILISSDVGVDTTVKIIRRIEAR 72

Query: 74  -RYAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
               K  S   +   + E +  +L       ++  F      +P+V++VVGVNGVGKTT 
Sbjct: 73  VARDKYTSTSELDRILREEVAALLQENNSQDVTNSFETQNLPKPYVLMVVGVNGVGKTTT 132

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+   S  G KV+L A DTFR+AA+DQLK+W  R   + +   + +D +++AY+A K
Sbjct: 133 IGKLAHNFSKNGKKVVLGAADTFRAAAVDQLKLWGQRVGVEVIDHGMNTDPSSVAYDAVK 192

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +      DV+IIDTAGRLH    LM  +GK+ RV++++ P APH V+ VLD +TGQNA+ 
Sbjct: 193 KGVEVGADVIIIDTAGRLHTKVNLMNELGKIKRVMQKVLPEAPHEVMLVLDGSTGQNAVI 252

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F  V     L +TK+DGTA+GG +I I    KIPV ++GVGE + DL+ F    F 
Sbjct: 253 QAREFTRVTDVNSLAITKLDGTAKGGVVIGISDEFKIPVKYIGVGEKMEDLQVFNKMAFV 312

Query: 308 AVIT 311
             + 
Sbjct: 313 ESLF 316


>gi|264680036|ref|YP_003279945.1| signal recognition particle-docking protein [Comamonas testosteroni
           CNB-2]
 gi|262210551|gb|ACY34649.1| signal recognition particle-docking protein [Comamonas testosteroni
           CNB-2]
          Length = 385

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 125/311 (40%), Positives = 182/311 (58%), Gaps = 7/311 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  +  +   +W+ +L  G   T       I  + +  ++DD + EELED L+ +D GV 
Sbjct: 80  AKPQAPNSRQNWMERLKAGLRKT----GSSIATVFTGTQIDDRLYEELEDALLMADTGVK 135

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVN 120
             Q ++E+L  +      +    +  +       L+ PL KP      H P VI+V GVN
Sbjct: 136 ATQHLLEDLKRRVKETKTTEPAAVKALLADALTDLLRPLEKPLTIG-EHTPTVIMVAGVN 194

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+K ++D    V+LAA DTFR+AA +QL +WA+R + + + S+ G D AA
Sbjct: 195 GAGKTTSIGKLTKHLADGEQSVLLAAADTFRAAAREQLGVWANRNTVEII-SQDGGDPAA 253

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           ++++A    +A+K DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  
Sbjct: 254 VSFDAVSAGKARKKDVVLVDTAGRLPTQLHLMEELKKIKRVVSKADGTAPHEVLLVIDGN 313

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV  F      TGLI+TK+DGTA+GG L  I     +PVYF+GVGE I DLE 
Sbjct: 314 TGQNALTQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKIEDLET 373

Query: 301 FVAKDFSAVIT 311
           F A++F+  + 
Sbjct: 374 FSAREFAQALL 384


>gi|188579898|ref|YP_001923343.1| signal recognition particle protein [Methylobacterium populi BJ001]
 gi|179343396|gb|ACB78808.1| signal recognition particle protein [Methylobacterium populi BJ001]
          Length = 520

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L   ++ +     L +        E+   L+ +D+ + V +   +++  K   
Sbjct: 2   FEGLSDRLSGILSGLTRRGALTEADVTAAMREVRRALLEADVALEVVRSFTDKVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++ +  ML   +   + + +  P  IL+VG+ G GKTT   K+
Sbjct: 62  AVVLKSVTPGQMVVKIVNDELIAMLGTDASVVDLN-APAPVAILMVGLQGSGKTTTTAKI 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++      +V+LA+ DT R AA++QL + A +   + +    G  A  +A  A + A+
Sbjct: 121 ARRLNQREKRRVLLASLDTRRPAAMEQLAVLAKQVEVESLPIVAGQSAVQIARRAMEAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  LMA   ++           PH VL V DA TGQ+A+    
Sbjct: 181 LGGFDVVMLDTAGRTTVDEGLMAEAAEVKAATN------PHEVLLVADALTGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG +RGG  + +      P+  +GVGE ++ LE F  +  +  I
Sbjct: 235 AFDQRLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLVGVGEKVDALEEFHPQRVANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|84998408|ref|XP_953925.1| signal recognition particle 54kDa protein 2 [Theileria annulata]
 gi|65304923|emb|CAI73248.1| signal recognition particle 54kDa protein 2, putative [Theileria
           annulata]
          Length = 495

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 138/306 (45%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A  S ++ +    + S+  + + V EE    +   L+ +D+ V +  K+ E +      
Sbjct: 3   LAELSNQITQAFRKLHSTTVISEAVIEEVIGDIVRALLMADVNVKLVHKLKENVKRLNKN 62

Query: 77  K----DVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                  + +R L   V + +  ML    KPF      R +VI+ VG+ G GKTT   K 
Sbjct: 63  NSDMIGANKRRYLQKIVVDELVNMLTTEKKPFEPK-KGRCNVIMFVGLQGAGKTTSCTKF 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G +  L   DTFR+ A DQLK  A +    F  S   ++ A +A +   + + 
Sbjct: 122 AYHYQRKGWRTALICADTFRAGAFDQLKQNAAKVKISFYGSYSEANPAKVAADGVARFKE 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR      L   +  +       D   P  V+ V+D+  GQ    Q   
Sbjct: 182 EKYDMIIVDTSGRHKQEDALFDEMKLIY------DAVQPDEVVFVMDSHIGQACYDQASA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+       +I+TK+DG A+GGG +  V     P+ F+G GE  +D EPF  K F + + 
Sbjct: 236 FNKAVDVGSVIITKLDGHAKGGGALSAVSATNSPIIFIGTGEHFDDFEPFDPKSFISRLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GFGDIN 301


>gi|317125420|ref|YP_004099532.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Intrasporangium calvum DSM 43043]
 gi|315589508|gb|ADU48805.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Intrasporangium calvum DSM 43043]
          Length = 540

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 147/322 (45%), Gaps = 34/322 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L     ++    RL +        ++   L+ +D+ + V ++    +  +   
Sbjct: 2   FATLSDRLTATFKNLRGKGRLSESDVNKAVRDIRLALLDADVALPVVKRFTTAVRERALG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q+V+  V+E +  +L   ++   +   + P VI++ G+ G GKTT  GKL
Sbjct: 62  EEVNQALNPAQQVVKIVNEELVTILGGETRQIRF-AKNPPTVIMLAGLQGSGKTTFAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE------------------ 173
            + + D G   +L A D  R  A+ QL++  +R        E                  
Sbjct: 121 GRWLKDRGHTPLLVAADLQRPNAVTQLEVVGERAGLKVFAPERGNVGGHDAVAGTGEGTR 180

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D  +++    + A+A++ DV+I+DTAGRL  ++ LM     +   ++      P  V
Sbjct: 181 SFGDPVSVSRAGVEHARAQQHDVVIVDTAGRLAVDTNLMQQAADIRSAIQ------PDEV 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+DA  GQ A+   + FH     TG++++K+DG ARGG  + I      P+ F  VGE
Sbjct: 235 LFVIDAMIGQAAVETAQAFHEGVAFTGVVLSKLDGDARGGAALSIREVTGEPIMFASVGE 294

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
            + D+E F     +  I    D
Sbjct: 295 KVTDIEVFHPDRMAGRILDMGD 316


>gi|297183609|gb|ADI19736.1| hypothetical protein [uncultured bacterium EB000_36F02]
          Length = 305

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 118/300 (39%), Positives = 179/300 (59%), Gaps = 1/300 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +    K   GF  ++     G+ DII+ + +DD    ++ED LI SD+GV  A  I + +
Sbjct: 1   MGIFEKFKLGFKKSASTFTSGLKDIITKKEIDDKTLSKVEDYLIYSDVGVEAATDIKDII 60

Query: 71  LTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             ++   + ++   +   +   I  ++ PL     +    + +V+L+ GVNGVGKTT IG
Sbjct: 61  AQEKINPNKNIMEEINVILKNYIVSLMKPLENENFFYNKEKLNVVLISGVNGVGKTTTIG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+ K +   G KVM +A DTFR+AAI+QL+ WA +     V S  GSD A++AY+A +QA
Sbjct: 121 KIGKILKSNGNKVMFSACDTFRAAAIEQLENWATKIDVQIVKSTQGSDPASVAYKAVEQA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                + ++IDTAGRL N   LM    K+  V K++DP APH V+ +LDAT+GQN + QV
Sbjct: 181 IQNNFNHVLIDTAGRLQNKKNLMDEYKKIAHVTKKIDPDAPHDVILILDATSGQNVINQV 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+ +   TGLIMTK+D TA+GG LI +   +K+P+  +G+GE  +DL+ F A+ F+  
Sbjct: 241 EEFNKIIPITGLIMTKLDSTAKGGILIALARKYKLPIIAVGLGEKEDDLQIFSAEKFAEA 300


>gi|52080200|ref|YP_078991.1| signal recognition particle-like (SRP) component [Bacillus
           licheniformis ATCC 14580]
 gi|52785577|ref|YP_091406.1| hypothetical protein BLi01818 [Bacillus licheniformis ATCC 14580]
 gi|52003411|gb|AAU23353.1| signal recognition particle-like (SRP) component [Bacillus
           licheniformis ATCC 14580]
 gi|52348079|gb|AAU40713.1| Ffh [Bacillus licheniformis ATCC 14580]
          Length = 446

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ I+ I    ++ +     +  E+   L+ +D+   V +  V+++  +  
Sbjct: 2   AFEGLADRLQQTISKIRGKGKVTEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++              P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVKEELTELMGGEESKI-AAAKRPPTVIMMVGLQGAGKTTSTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +        +L A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKHNRNPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDKVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D ++IDTAGRLH +  LM  + ++           P  +  V+D+ TGQ+A+   
Sbjct: 181 KEDHHDYVLIDTAGRLHIDEELMDELEQVKET------AQPEEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+I+TK+DG  RGG  + I      P+ F G+GE ++ LEPF  +  ++ 
Sbjct: 235 KSFNEQLGVTGVILTKLDGDTRGGAALSIRAVTNTPIKFAGMGEKLDALEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|84515969|ref|ZP_01003330.1| Signal recognition particle protein ffh [Loktanella vestfoldensis
           SKA53]
 gi|84510411|gb|EAQ06867.1| Signal recognition particle protein ffh [Loktanella vestfoldensis
           SKA53]
          Length = 496

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  V  +  K   
Sbjct: 2   FENLSERLSGVFDKLTKQGALSEDDVKTALREVRTALLEADVSLPVARDFVAAVQAKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + + ++L     P      + P  IL+VG+ G GKTT   KL
Sbjct: 62  QAVTKSITPGQQVVKIVHDELQRVLTGDEDPGALKIDNPPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++    G KV++A+ DT R AA++QL I   +   D +    G     +A  A  QA 
Sbjct: 122 AKRLKEREGKKVLMASLDTNRPAAMEQLAILGMQIGVDTLPIVKGETPVQIAKRAKVQAS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH ++ L+A    +       D   P   L V+D  TGQ+A+   +
Sbjct: 182 LGGYDVYMLDTAGRLHIDAELIAQAAAV------RDVANPRETLLVVDGLTGQDAVNVAQ 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F     +  I
Sbjct: 236 EFDDKIGVTGVVLTRMDGDGRGGAALSMRAITGKPIRFVGLGEKMDAIETFEPSRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|163743789|ref|ZP_02151162.1| signal recognition particle protein [Phaeobacter gallaeciensis
           2.10]
 gi|161382938|gb|EDQ07334.1| signal recognition particle protein [Phaeobacter gallaeciensis
           2.10]
          Length = 507

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  V+ +  +   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFVKRVQEQATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L     P      + P  IL+VG+ G GKTT  GKL
Sbjct: 62  QAVTKSVTPGQQVVKIVHDALVDVLRGAEDPGQLKVDNPPAPILMVGLQGSGKTTTTGKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ D  G +V++A+ D +R AA+DQL +   +   D +    G     +A  A +QA 
Sbjct: 122 AKRLKDKDGKRVLMASLDVYRPAAMDQLAVLGTQIGVDTLPIVPGQKPVDIAKRAKQQAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  + +LM  +  +  V+       P   L V+D  TGQ A+   E
Sbjct: 182 LGGYDVYMLDTAGRLQIDEVLMQEVEDVRDVVS------PRETLLVVDGLTGQVAVEVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A  G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F     +  I
Sbjct: 236 EFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDAIETFEPDRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|18655505|pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
 gi|18655506|pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
 gi|18655507|pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
 gi|48425476|pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
           With The Elongation-Arrested Ribosome
          Length = 296

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 142/304 (46%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + VA+  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V       + +L  V E + + L   ++          ++  +VG+ G GKTT   KL
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEAR---LPVLKDRNLWFLVGLQGSGKTTTAAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL++  ++     +    G    ++     ++A+ 
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL     
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  +  I 
Sbjct: 233 FDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|163738195|ref|ZP_02145611.1| chorismate mutase [Phaeobacter gallaeciensis BS107]
 gi|161388811|gb|EDQ13164.1| chorismate mutase [Phaeobacter gallaeciensis BS107]
          Length = 507

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  V+ +  +   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFVKRVQEQATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L     P      + P  IL+VG+ G GKTT  GKL
Sbjct: 62  QAVTKSVTPGQQVVKIVHDALVDVLRGAEDPGQLKVDNPPAPILMVGLQGSGKTTTTGKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ D  G +V++A+ D +R AA+DQL +   +   D +    G     +A  A +QA 
Sbjct: 122 AKRLKDKEGKRVLMASLDVYRPAAMDQLAVLGTQIGVDTLPIVPGQKPVDIAKRAKQQAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  + +LM  +  +  V+       P   L V+D  TGQ A+   E
Sbjct: 182 LGGYDVYMLDTAGRLQIDEVLMQEVEDVRDVVS------PRETLLVVDGLTGQVAVEVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A  G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F     +  I
Sbjct: 236 EFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDAIETFEPDRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|329770523|ref|ZP_08261901.1| signal recognition particle protein [Gemella sanguinis M325]
 gi|328836272|gb|EGF85941.1| signal recognition particle protein [Gemella sanguinis M325]
          Length = 450

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 145/306 (47%), Gaps = 20/306 (6%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L+  I  +    ++ +     +  E+   L+ +D+   V ++ V+++  +  
Sbjct: 2   AFENLSERLQNTIAKLTGKGKVSESDVKEMMREVRLALLEADVNFKVVKEFVKKISERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E + ++L   +   N     +   +++VG+ G GKTT  GK
Sbjct: 62  GTEVMKSLTPAQQIVKIVNEELVELLGGTNVELNQG--GKITTVMMVGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K      K  L  A D +R AA+ QLK    +   +    +   D A +  E  + A
Sbjct: 120 LALKAKKTMKKKPLLIAADVYRPAAVQQLKTLGKQLDIEVFFVD--KDPADIVKEGLEFA 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    + +IIDTAGRLH + +LM  +  +  V        P  +L V+DA  GQ A+   
Sbjct: 178 KENYYNYVIIDTAGRLHIDELLMDELKDIKSVSN------PDEILLVVDAMIGQEAVNIA 231

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F      TGL++TK+DG  RGG  + I      P+  +G+GE +NDLE F  +  ++ 
Sbjct: 232 TSFDEQLDITGLVLTKLDGDTRGGAALSIKSITGKPIKLVGMGEKMNDLELFHPERMASR 291

Query: 310 ITGCLD 315
           I G  D
Sbjct: 292 ILGMGD 297


>gi|126657247|ref|ZP_01728413.1| cell division protein; FtsY [Cyanothece sp. CCY0110]
 gi|126621518|gb|EAZ92229.1| cell division protein; FtsY [Cyanothece sp. CCY0110]
          Length = 463

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 107/315 (33%), Positives = 182/315 (57%), Gaps = 5/315 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +   V+ E ++W+++L +G   +   L   +  I+    L++    E+E LL+++D G+ 
Sbjct: 147 APDDVSQEEINWLKRLRQGLGKSRRGLVNQLKSIVGQGPLNEDAVMEIEALLLQADTGIE 206

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRP---HVILVV 117
               I+  L  K   + +  ++ L  +  ++ ++L  PL K  N  F+      ++ L+ 
Sbjct: 207 ATDYIISTLQNKLLEEALPPEQALEYLKSILREILDRPLQKVVNPGFAPEKGVLNIWLLT 266

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT IGKL+     +G   ++AA DTFR+AA+ Q+++W +RT+   + +    +
Sbjct: 267 GVNGAGKTTTIGKLAHLAQQSGYNCIIAAADTFRAAAVQQVQVWGERTNTPVIANPGKNT 326

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++    AQA++ D+L++DTAGRL N   LMA + K+ R++ +    A    L V
Sbjct: 327 DPAAVVFDGISAAQAREADLLLVDTAGRLQNKKNLMAELAKIRRIIDKKADKAQVESLLV 386

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN LRQ ++F   A  +G+++TK+DGTA+GG  + +     +P+ F+GVGEGI 
Sbjct: 387 LDATLGQNGLRQAQVFSEAANLSGVVLTKLDGTAKGGVALAVAQQLDLPIRFIGVGEGIE 446

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF + +F   + 
Sbjct: 447 DLRPFSSYEFVEALL 461


>gi|297620664|ref|YP_003708801.1| cell division protein FtsY [Waddlia chondrophila WSU 86-1044]
 gi|297375965|gb|ADI37795.1| cell division protein FtsY [Waddlia chondrophila WSU 86-1044]
          Length = 307

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 119/302 (39%), Positives = 181/302 (59%), Gaps = 3/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            S   K+    + T   L E +  + S + +D+   E+LE L   +D+G+  + ++  ++
Sbjct: 7   KSSFEKVKNALSKTRSALGEKLRSLFSGK-IDEETLEQLEQLFYEADLGIQASVELTAKV 65

Query: 71  LT-KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               R   ++  + ++ ++ + I + L  +S     +    P VILVVGVNG GKTT + 
Sbjct: 66  KEIYRKNPNLDAEGLIVEMKKEIEQSLSKISAEMAEN-PDPPTVILVVGVNGNGKTTTVA 124

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K+  DAG KV++AA DT+R+AA+ QL++W  R  +D V     SDAAA+A++A   A
Sbjct: 125 KLAKRYQDAGKKVLIAAADTYRAAAVAQLEVWTSRIGSDLVKGAPNSDAAAVAFDAMTAA 184

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  DV++IDTAGRLH    LM  + K+ RV  ++ P +PH  L VLDAT GQNA+ Q 
Sbjct: 185 KARGADVVLIDTAGRLHTRKDLMQELEKIKRVCNKVMPGSPHETLLVLDATIGQNAIDQA 244

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++FH     +GL +TK+DGTA+GG +I I     IPV F+GVGE ++DLEPF    FS  
Sbjct: 245 KIFHEYTPISGLCLTKLDGTAKGGVVINIQKQLGIPVKFIGVGETLSDLEPFNPAHFSQA 304

Query: 310 IT 311
           + 
Sbjct: 305 LL 306


>gi|77409117|ref|ZP_00785832.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae COH1]
 gi|16588994|gb|AAL26980.1|AF380672_4 putative signal recognition particle [Streptococcus agalactiae]
 gi|33439457|gb|AAO49795.1| putative signal particle [Streptococcus agalactiae serogroup III]
 gi|77172295|gb|EAO75449.1| signal recognition particle-docking protein FtsY [Streptococcus
           agalactiae COH1]
          Length = 536

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 177/312 (56%), Gaps = 3/312 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
           +Q    ++ S   K  +    T       +   +S+ RR+D+   EELE++LI SD+GV 
Sbjct: 221 SQADTIKAESQEEKYNRSLKKTRTGFSARLNAFLSNFRRVDEEFFEELEEMLILSDVGVN 280

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           VA ++ E+L  +   ++      L    V +L+             +F     V+L VGV
Sbjct: 281 VATQLTEDLRYEAKLENAKKSEDLKRVIVEKLVEIYEKDGIYNEAINFQEGLTVMLFVGV 340

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V  E  +D A
Sbjct: 341 NGVGKTTSIGKLAHQYKSQGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGEKKADPA 400

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA
Sbjct: 401 SVVFDGMEKAVAQGVDVLLIDTAGRLQNKENLMAELEKIGRIIKRVVPDAPHETLLALDA 460

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+ 
Sbjct: 461 STGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIG 520

Query: 300 PFVAKDFSAVIT 311
            F ++DF   + 
Sbjct: 521 EFNSEDFMRGLL 532


>gi|83746816|ref|ZP_00943864.1| signal recognition particle, subunit ffh/srp54 [Ralstonia
           solanacearum UW551]
 gi|207721472|ref|YP_002251912.1| gtp-binding signal recognition particle srp54, g-domain protein
           [Ralstonia solanacearum MolK2]
 gi|207744368|ref|YP_002260760.1| gtp-binding signal recognition particle srp54, g-domain protein
           [Ralstonia solanacearum IPO1609]
 gi|83726585|gb|EAP73715.1| signal recognition particle, subunit ffh/srp54 [Ralstonia
           solanacearum UW551]
 gi|206586632|emb|CAQ17218.1| gtp-binding signal recognition particle srp54, g-domain protein
           [Ralstonia solanacearum MolK2]
 gi|206595773|emb|CAQ62700.1| gtp-binding signal recognition particle srp54, g-domain protein
           [Ralstonia solanacearum IPO1609]
          Length = 478

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 148/324 (45%), Gaps = 35/324 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   LDNLTQRLARVVKTMRGEARLTEANTAEMLREVRLALLEADVALPVVREFIARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLM------------------PLSKPFNWDFS-HRPH 112
           +DV       Q ++  V   +  ++                   P+ +    + +   P 
Sbjct: 62  EDVLTSLSPGQALVGIVQRELTAIIGGEEAVASAAPGPAGAPGLPMGRAAELNLNVQPPA 121

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +IL+ G+ G GKTT +GKL+K + +   K +   + D +R AAI QLK  +++  ADF  
Sbjct: 122 IILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFP 181

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S+       +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK        
Sbjct: 182 SQPDQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHATLKPA------ 235

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+GV
Sbjct: 236 ETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGKPIKFVGV 295

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
            E ++ LEPF     +  I G  D
Sbjct: 296 AEKLDGLEPFYPDRMAQRILGMGD 319


>gi|319406337|emb|CBI79974.1| signal recognition particle protein [Bartonella sp. AR 15-3]
          Length = 519

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L   ++ +     L D        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FETLQERLGSILSSLTGRGVLSDQDITTALREIRRALLEADVALDVVRSFTDRVREKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +       Q V+  V + +  ML       N   +  P V+++VG+ G GKTT   KL
Sbjct: 62  AAIVKSIKPGQMVVKIVHDELVHMLGG-EGVLNDFNAPAPVVVMLVGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K+++D    KV++A+ DT R AA +QL+   ++     +       A  ++  A + A+
Sbjct: 121 AKRLTDKHNKKVLMASLDTRRPAAQEQLRQLGEQVQIASLPVVPDQSAVDISARAVQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR H +  LM  + ++    K      P+ ++ V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRNHIDEALMLELKEIKASSK------PYEIMLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+I+T+M+   RGG  + +      P+  +G GE +  LE F  +  +  I
Sbjct: 235 SFDERIGITGIILTRMESDGRGGAALSMRAVTGKPIKAIGTGEKMEALEEFHPRRIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|307199091|gb|EFN79801.1| Signal recognition particle 54 kDa protein [Harpegnathos saltator]
          Length = 506

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +K+ E +      
Sbjct: 3   LADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIRLVKKLRENVRQVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ +R++   V + + K++ P  K +      RP+VI+ VG+ G GKTT   KL
Sbjct: 63  EDMAGGLNKRRMIQSAVFKELVKLIDPGVKAYQ-PVKGRPNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +     + 
Sbjct: 122 AYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVTIAQDGVDMFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L+  +   P +++ V+DAT GQ    Q + 
Sbjct: 182 EGYEIIIVDTSGRHKQEESLFEEM------LQVANAVQPDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + PV F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFVGTGEHIDDLEPFKTKPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|333031351|ref|ZP_08459412.1| signal recognition particle protein [Bacteroides coprosuis DSM
           18011]
 gi|332741948|gb|EGJ72430.1| signal recognition particle protein [Bacteroides coprosuis DSM
           18011]
          Length = 441

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 149/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +     + +       +++   L+ +D+   VA+K  + +  K   
Sbjct: 2   FDNLSERLERSFKLLKGEGTITEINVAETLKDVRRALLDADVNYKVAKKFTDTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++  V + + +++   +  F  D   +P VIL+ G+ G GKTT  GKL
Sbjct: 62  QDVLTAVKPSQLMVKIVHDELTQLMGGETADF--DVQGKPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +        +L A D +R AAIDQLK+  ++ +          D   +A  A ++A+
Sbjct: 120 AKLLKTKKHKSPLLVACDVYRPAAIDQLKVLGEQINVPVYAEPDSKDPVKIAQNAIQEAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  D++IIDTAGRL  +  +M  I  + + +       P+ VL V+D+ TGQ+A+   +
Sbjct: 180 AKGNDIVIIDTAGRLAIDEQMMNEIESIKKAIN------PNEVLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNERLNFDGVVLTKLDGDTRGGAALSIRTVVNKPIKFVGTGEKLEAIDQFHPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|169824542|ref|YP_001692153.1| signal recognition particle protein [Finegoldia magna ATCC 29328]
 gi|167831347|dbj|BAG08263.1| signal recognition particle protein [Finegoldia magna ATCC 29328]
          Length = 378

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 177/302 (58%), Gaps = 3/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  KL      T   +   I  ++++ R +D+ + EE+E+ LI +DIGV    KIV +L
Sbjct: 77  GFFEKLKNSLLKTRDNISNKIDQVLANYRTVDEELFEEIEETLISADIGVDTTLKIVGQL 136

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   +++     +  V ++++ + ++      N +   +  +ILVVGVNGVGKTT IG
Sbjct: 137 RDQVKLRNIQDPSKIKSVLADILKENIINEKIDNNLNVDEK-TIILVVGVNGVGKTTTIG 195

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K    G KV++ A DTFR+AAI+QL  W++R   D +  + G+D A++ ++     
Sbjct: 196 KLAMKYKKDGKKVLMVAADTFRAAAIEQLTEWSNRAKVDIISHKEGADPASVVFDGVNAM 255

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +++  D+LI DTAGRLHN   LM  + K+ RV+++  P A   +L ++D TTGQNA+ Q 
Sbjct: 256 KSRNTDILICDTAGRLHNKKNLMNELNKIKRVIEKEYPEAKKEILLIVDGTTGQNAIIQA 315

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG I+TK+DGTA+GG + P+ +   IPV F+G+GE +NDL  F  + F   
Sbjct: 316 KEFMNATDLTGAIITKLDGTAKGGMIFPLEMELGIPVKFIGIGEQVNDLVKFEPEKFIEA 375

Query: 310 IT 311
           I 
Sbjct: 376 II 377


>gi|330466278|ref|YP_004404021.1| signal recognition particle-docking protein FtsY [Verrucosispora
           maris AB-18-032]
 gi|328809249|gb|AEB43421.1| signal recognition particle-docking protein FtsY [Verrucosispora
           maris AB-18-032]
          Length = 396

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 176/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +     +G+  ++S  RLD+ V EE+ED LI +D+G+   +
Sbjct: 80  EVPEPTAGRLVRLRSRLSRSQNAFGKGLLGLLSRDRLDEDVWEEIEDSLITADVGIDATR 139

Query: 65  KIVEELLTK--RYAKDVSVQRVLYDVSELIHKMLMPLSKPF-NWDFSHRPHVILVVGVNG 121
           +IV+ L  +        + +      +EL++ +   L +          P V+LVVGVNG
Sbjct: 140 EIVDRLRERTRVLGTRSAAELRALLAAELVNALDPELDRSLRTTPKEGVPAVLLVVGVNG 199

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GK+++ +   G  V+L A DTFR+AA DQL+ WA R  A+ V    G+D A++
Sbjct: 200 AGKTTTCGKIARVLIADGRSVLLGAADTFRAAAADQLETWAGRVGAETVRGPEGADPASV 259

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A ++     VD +++DTAGRL N   LM  +GK+ RV+++  P      L +LDATT
Sbjct: 260 AFDAVRRGIDTGVDTVLVDTAGRLQNKVGLMDELGKVKRVVEKHGP--IDETLLILDATT 317

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG +I +     IPV  +G+GEG +DL PF
Sbjct: 318 GQNGLEQARVFTEVVNVTGVVLTKLDGTAKGGIVIAVQRKLGIPVKLVGLGEGPDDLAPF 377

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 378 DPAQFVDALLG 388


>gi|40889162|pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
 gi|40889163|pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
 gi|157881432|pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
           Resolution
 gi|157881433|pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
           Resolution
 gi|157883947|pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
           Resolution
 gi|157883948|pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
           Resolution
 gi|157883949|pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
           Resolution
 gi|157883950|pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
           Resolution
          Length = 297

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 142/304 (46%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + VA+  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V       + +L  V E + + L   ++          ++  +VG+ G GKTT   KL
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEAR---LPVLKDRNLWFLVGLQGSGKTTTAAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL++  ++     +    G    ++     ++A+ 
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL     
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  +  I 
Sbjct: 233 FDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|119390316|pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
           To A Translating Ribosome
          Length = 432

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 142/304 (46%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + VA+  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V       + +L  V E + + L   ++          ++  +VG+ G GKTT   KL
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEAR---LPVLKDRNLWFLVGLQGSGKTTTAAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL++  ++     +    G    ++     ++A+ 
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL     
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  +  I 
Sbjct: 233 FDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|307183983|gb|EFN70554.1| Signal recognition particle 54 kDa protein [Camponotus floridanus]
          Length = 506

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +K+ E +      
Sbjct: 3   LADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIRLVKKLRENVRQVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ +R++   V + + K++ P  K +      RP+VI+ VG+ G GKTT   KL
Sbjct: 63  EDMAGGLNKRRMIQSAVFKELVKLIDPGVKAYQ-PVKGRPNVIMFVGLQGSGKTTSCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D  A+A +     + 
Sbjct: 122 AYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVAIAQDGVDMFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L+  +   P +++ V+DAT GQ    Q + 
Sbjct: 182 EGYEIIIVDTSGRHKQEESLFEEM------LQVANAVQPDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + PV F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFVGTGEHIDDLEPFKTKPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|75676963|ref|YP_319384.1| Signal recognition particle protein [Nitrobacter winogradskyi
           Nb-255]
 gi|74421833|gb|ABA06032.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nitrobacter
           winogradskyi Nb-255]
          Length = 516

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 137/305 (44%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +     L +   +    E+   L+ +D+ + V +   +++  +   
Sbjct: 2   FDNLSERLGGILDRLTRRGALTEADVDAAMREVRRALLEADVSLDVVRSFTDKVREQAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + +   L    +    +    P +I++VG+ G GKTT   KL
Sbjct: 62  ATVVKSVTPGQMVVKIVHDELIATLGSDGQTIELNAV-PPVIIMMVGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++++    KV++A+ D +R AA++QL +         +    G     +A  A +  +
Sbjct: 121 ARRLTERDKRKVLMASLDIYRPAAMEQLAVLGRDLDIKTLPIVAGQKPEQIARRALEAGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  +M+    +           PH VL V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRTTLDEDMMSEAASIKTA------AHPHEVLLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE  + LE F     +  I
Sbjct: 235 SFDERVGLTGIVLTRVDGDGRGGAALSMRQVTGKPIKLIGTGEKTDALEDFHPSRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|71033463|ref|XP_766373.1| signal recognition particle 54 kDa protein [Theileria parva strain
           Muguga]
 gi|68353330|gb|EAN34090.1| signal recognition particle 54 kDa protein, putative [Theileria
           parva]
          Length = 495

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 138/306 (45%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A  S ++ +    + S+  + + V EE    +   L+ +D+ V +  K+ E +      
Sbjct: 3   LAELSNQITKAFRKLHSTTVISEAVIEEVIGDIVRALLMADVNVKLVHKLKENVKRLNKN 62

Query: 77  K----DVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                  + +R L   V + +  ML    KPF      R +VI+ VG+ G GKTT   K 
Sbjct: 63  NADMIGANKRRYLQKIVVDELVNMLTTEKKPFEPK-KGRCNVIMFVGLQGAGKTTSCTKF 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G +  L   DTFR+ A DQLK  A +    F  S   ++ A +A +   + + 
Sbjct: 122 AYHYQRKGWRTALICADTFRAGAFDQLKQNAAKVKISFYGSYSEANPAKVAADGVARFKE 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR      L   +  +       D   P  V+ V+D+  GQ    Q   
Sbjct: 182 EKYDMIIVDTSGRHKQEDALFDEMKLIY------DAVQPDEVVFVMDSHIGQACYDQAAA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+       +I+TK+DG A+GGG +  V     P+ F+G GE  +D EPF  K F + + 
Sbjct: 236 FNKAVDVGSVIITKLDGHAKGGGALSAVSATNSPIIFIGTGEHFDDFEPFDPKSFISRLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GFGDIN 301


>gi|302872005|ref|YP_003840641.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574864|gb|ADL42655.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 301

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 120/302 (39%), Positives = 188/302 (62%), Gaps = 4/302 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     E +  ++ S +++DD + EELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFFDRLREGLSKTKKNFTEKVESLLKSFKQVDDELFEELEEILVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +   + +S  + +    E++ + ++ +    N      P +IL+VGVNGVGKTT IG
Sbjct: 61  LKERVKKEKISDSQAIK---EILKEEMLNIIDLENKLNEEYPLIILMVGVNGVGKTTSIG 117

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++  +   G KV++ A DTFR+AA +QL+IWA R   D +    G+D AA+ ++  +  
Sbjct: 118 KIANLLKSNGKKVLIVAADTFRAAAAEQLEIWAKRVGCDIIKHVEGADPAAVVFDGIQAM 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQNAL Q 
Sbjct: 178 RARKADVLIVDTAGRLHTKKNLIEELKKINRVINQQMPEANKETLLVIDATTGQNALNQA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     +G+++TK+DGTA+GG +I I    KIPV F+GVGE I+DL+ F AK+F   
Sbjct: 238 KEFNQAVNISGIVLTKLDGTAKGGIVISICDELKIPVKFVGVGEKIDDLQYFNAKEFVDA 297

Query: 310 IT 311
           + 
Sbjct: 298 LF 299


>gi|269958440|ref|YP_003328227.1| cell division protein (FtsY) [Anaplasma centrale str. Israel]
 gi|269848269|gb|ACZ48913.1| cell division protein (FtsY) [Anaplasma centrale str. Israel]
          Length = 305

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 122/301 (40%), Positives = 185/301 (61%), Gaps = 4/301 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
             +  L      TS +L  GI  +    R++D    +EL  LLI +D+G   A    +++
Sbjct: 6   GLLGSLKDSLLKTSSRLNAGIRKLFQEGRKVDQETLKELLHLLISTDMGRESASFFTQKI 65

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              +++ + S  RV   ++E I   L  ++ P      H P V+++ GVNG GKTT   K
Sbjct: 66  AAMQFS-EPSCARVRETLAEEIEAFLTKVAVPI--SIEHSPQVVMLCGVNGSGKTTTAAK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  V++ A DTFR+AA+ QLKIWADR S   +  E G+DAA++AY+A  QA 
Sbjct: 123 LARKFQREGKSVLMGACDTFRAAAVSQLKIWADRISCPIIAGEAGADAASIAYKAVDQAI 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +K+DV++IDTAGRL N+  LM  + K+ RV+ R D  APH+ + VLDAT GQNA  QVE
Sbjct: 183 REKIDVVLIDTAGRLQNHKNLMEELAKVRRVIGRHDKKAPHNTIIVLDATIGQNAFSQVE 242

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F + AG  G+++TK+DGTA+GG ++ +   + I ++ +GVGEGI+DL+ F A++F+  +
Sbjct: 243 LFSSFAGVNGIVLTKLDGTAKGGIVLSVAQKYGIHIHAVGVGEGIDDLKDFSAREFARGL 302

Query: 311 T 311
            
Sbjct: 303 L 303


>gi|257457465|ref|ZP_05622633.1| signal recognition particle protein [Treponema vincentii ATCC
           35580]
 gi|257445088|gb|EEV20163.1| signal recognition particle protein [Treponema vincentii ATCC
           35580]
          Length = 442

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            + K+T  F+    K+    T  I+ + +++ V EE++  L+ +D+ + V ++ +   + 
Sbjct: 1   MLEKITNTFSGIVRKISGKAT--ITEKNIEEAV-EEIKIALLEADVNLRVVRRFINATIE 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +   + V       Q+ +  V + I   L    K           VIL +G+ G GKTT 
Sbjct: 58  EAKGEAVLKSVNPGQQFVKIVHDKILSFLGDEKKSLQLKGPDTQSVILFLGLQGSGKTTS 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+ ++   G K +L A D  R AA++QL    +R        E   DA  +A  A  
Sbjct: 118 AAKLAARLKKEGRKPLLVACDLVRPAAVEQLFSLGERIDVPVYK-EDTKDAVRVAQNAVT 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    D +I+DTAGRL  +  +M  I  + + +       P   L V DA TGQNA  
Sbjct: 177 FARKNGFDTVIVDTAGRLQIDEAMMKEIAAVKKAVN------PVETLLVADAMTGQNAAE 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F   AG TG+I+TK D  ARGG  + +      P+ ++GVGE I D EPF     +
Sbjct: 231 VAKAFDEQAGLTGVILTKFDSDARGGAALSLKTVTGKPILYVGVGEKIEDFEPFYPDRIA 290

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 291 GRILGMGD 298


>gi|157692277|ref|YP_001486739.1| signal recognition particle protein Ffh [Bacillus pumilus SAFR-032]
 gi|157681035|gb|ABV62179.1| signal recognition particle protein Ffh [Bacillus pumilus SAFR-032]
          Length = 446

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ I+ I    ++ +     +  E+   L+ +D+   V +  V+++  +  
Sbjct: 2   AFEGLADRLQQTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V E + +++              P VI++VG+ G GKTT  GK
Sbjct: 62  GQEVMKSLTPGQQVIKVVKEELTQLMGGEESKIAV-AKKSPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K M+ A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKHNRKPMMVAADIYRPAAIQQLQTLGKQLDMPVFSLGDQVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D +I+DTAGRLH +  LM  + K+  V        P  +  V+D+ TGQ+A+   
Sbjct: 181 KEEHHDYVILDTAGRLHIDEELMDELQKVKEVAN------PEEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F  +GE ++ +EPF  +  ++ 
Sbjct: 235 KSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAALGEKLDAIEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|311068118|ref|YP_003973041.1| signal recognition particle protein [Bacillus atrophaeus 1942]
 gi|310868635|gb|ADP32110.1| signal recognition particle protein [Bacillus atrophaeus 1942]
          Length = 446

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ I+ I    ++ +     +  E+   L+ +D+   V +  V+++  +  
Sbjct: 2   AFEGLADRLQQTISKIRGKGKVTEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++              P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMQSLTPGQQVIKVVKEELTELMGGEESKIAV-AKRPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D +I+DTAGRLH +  LM  +  +  +        P  +  V+D+ TGQ+A+   
Sbjct: 181 KEEHYDYVILDTAGRLHIDHELMDELANVKEIAN------PEEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F G+GE ++ LE F  +  ++ 
Sbjct: 235 KSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAGLGEKLDALEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|320167917|gb|EFW44816.1| signal recognition particle containing protein [Capsaspora
           owczarzaki ATCC 30864]
          Length = 512

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 145/305 (47%), Gaps = 14/305 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    K+   + ++ +S  +D+ V +    E+   L+ +D+ V +  K+   +      
Sbjct: 3   LADLGRKITGALRNMTASAVIDEEVLDAMLKEICTALLEADVNVKLVMKLRTSVKAAVNF 62

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWD---FSHRPHVILVVGVNGVGKTTVIGKLS 132
            +++       V  + ++  L  L  P          +P+VI+ VG+ G GKTT   KL+
Sbjct: 63  DEMAAGLNKKRVIQKAVYDELCRLVDPGIAPYKPVKGKPNVIMFVGLQGSGKTTTCTKLA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G K  L   DTFR+ A DQLK  A +    F  S   +D   +A E  ++ + +
Sbjct: 123 YYYHKKGWKTCLVCADTFRAGAFDQLKQNATKARIPFYGSYTEADPVLIAEEGVERFKKE 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             +++I+DT+GR    + L   + ++ + +       P +V+ VLDAT GQ AL Q + F
Sbjct: 183 GFEIIIVDTSGRHKQEASLFEEMLQISKAVD------PQNVIFVLDATIGQAALGQAQAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            A      +IMTK+DG A+GGG +  V   + P+ F+G GE + D E F  K F   + G
Sbjct: 237 KATVDVGSVIMTKLDGHAKGGGALSAVAATQSPIIFIGTGEHMEDFERFETKAFIGKLLG 296

Query: 313 CLDYG 317
             D G
Sbjct: 297 MGDIG 301


>gi|325832904|ref|ZP_08165577.1| signal recognition particle-docking protein FtsY [Eggerthella sp.
           HGA1]
 gi|325485769|gb|EGC88233.1| signal recognition particle-docking protein FtsY [Eggerthella sp.
           HGA1]
          Length = 306

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 183/306 (59%), Gaps = 4/306 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  ++++G   +  K KE +  ++     LD+   + LE+ LI +D+G A A +IVE 
Sbjct: 1   MGFFDRISEGLTRSRDKFKEQMNVLLDRGPDLDEEFWDGLEETLILADVGGAAAAEIVEG 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +   K +     + D+     ++    ++        +P ++L VG+NG GKTT +G
Sbjct: 61  LRDQATRKALPDAYAVLDLLN--DQIASTFTEGGEDVLGGQPALVLFVGINGTGKTTTVG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K+ +DAG  V+L + DTFR+AAI+QL++WA R + + V  E GSD A++ Y+  ++A
Sbjct: 119 KLAKEATDAGRTVILGSADTFRAAAIEQLEVWAKRANVEVVTRERGSDPASVCYDTIERA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +++  D+++IDTAGRLH ++ LM  + K++ V+++      ++VL V DATTGQN L Q 
Sbjct: 179 ESRGADLVLIDTAGRLHTSADLMRELEKVVNVVRKRSQLPVYTVL-VTDATTGQNGLSQA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F       G+I+TK+DGTA+GG  + +     +PV  +GVGEG++DL  F A DF+  
Sbjct: 238 REFDRALDLDGVIVTKLDGTAKGGIALAVSHELGLPVLKIGVGEGLDDLRDFDAHDFARA 297

Query: 310 ITGCLD 315
           + G  D
Sbjct: 298 LVGEFD 303


>gi|308235881|ref|ZP_07666618.1| signal recognition particle protein [Gardnerella vaginalis ATCC
           14018]
 gi|311115023|ref|YP_003986244.1| signal recognition particle protein [Gardnerella vaginalis ATCC
           14019]
 gi|310946517|gb|ADP39221.1| signal recognition particle protein [Gardnerella vaginalis ATCC
           14019]
          Length = 566

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 150/323 (46%), Gaps = 33/323 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S + +L      +    +L D   +    E+   L+ +D+ + V +    ++  + 
Sbjct: 2   AAFSSLTERLSGAFKHLRRKGKLSDADIDGTIREIRRALLDADVALDVVRSFTAKIRERA 61

Query: 75  YAKDVS-----VQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
             ++VS      Q+V+  V++ +  +L   + +P N+   + P VI++ G+ G GKTT+ 
Sbjct: 62  LGEEVSSALNPAQQVVRIVNDELTNVLGSGVDRPLNF-AKYPPTVIMLAGLQGAGKTTLA 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE--------------- 173
           GKL   + D+G   +L A D  R  A+ QL++ A+R        E               
Sbjct: 121 GKLGYWLKDSGHTPLLVAADLQRPNAVTQLEVVAERAGVAIFAPERGVQSDGGSEVVSAG 180

Query: 174 -IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               D   +A ++   A+AK  D +IIDTAGRL  +  LM    ++       D   P  
Sbjct: 181 LATGDPVKVARDSIDYARAKMYDTVIIDTAGRLGVDDALMQQAREI------RDAVNPQE 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+DA  GQ+A+R  + F+     TG++++K+DG ARGG  + +      P+ F   G
Sbjct: 235 ILFVIDAMIGQDAVRTAQAFNEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTG 294

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG+ D E F     ++ I    D
Sbjct: 295 EGLKDFEIFHPDRMASRILDMGD 317


>gi|15606250|ref|NP_213628.1| cell division protein FtsY [Aquifex aeolicus VF5]
 gi|6225393|sp|O67066|FTSY_AQUAE RecName: Full=Cell division protein ftsY homolog
 gi|2983449|gb|AAC07030.1| cell division protein FtsY [Aquifex aeolicus VF5]
          Length = 461

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 187/306 (61%), Gaps = 2/306 (0%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +  +  S + KL +G   T   ++ G+  +   R++D+   EELE++L+++D+GV  A +
Sbjct: 157 IEEKKESILDKLRRGLQKTKEAVEFGV--LFRGRKVDEEFFEELEEMLVKADVGVKTAVE 214

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + E+L  +   K++     + ++ +   K L+   +           V+L VGVNG GKT
Sbjct: 215 LTEKLRKEAIRKNIKEGEKIKELLKKELKELLKNCQGELKIPEKVGAVLLFVGVNGSGKT 274

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ ++   G KV+L AGDTFR+AAI+QL++WA R   D V  E GSD  A+ YE 
Sbjct: 275 TTIGKLAHQLKQKGKKVLLVAGDTFRAAAIEQLEVWAKRAGVDIVKKEEGSDPGAVVYEG 334

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K+A+ +  +V+++DTAGRLH    L+  + K+ +V+++ D   P   L V+DATTGQNA
Sbjct: 335 MKKAKEEGYEVVLVDTAGRLHTKEPLINELRKIKKVIQKFDKEEPSETLLVIDATTGQNA 394

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           ++Q ++F      TG+++TK+DG+A+GG ++ I    KIP+  +GVGEGI+DL+PF A  
Sbjct: 395 IQQAKVFKEAVDITGIVVTKLDGSAKGGAVVAICRELKIPIKLVGVGEGIDDLQPFDADA 454

Query: 306 FSAVIT 311
           +   + 
Sbjct: 455 YVEALL 460


>gi|333030362|ref|ZP_08458423.1| signal recognition particle-docking protein FtsY [Bacteroides
           coprosuis DSM 18011]
 gi|332740959|gb|EGJ71441.1| signal recognition particle-docking protein FtsY [Bacteroides
           coprosuis DSM 18011]
          Length = 317

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 122/311 (39%), Positives = 185/311 (59%), Gaps = 10/311 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           ++  K     L +G + T   +   I  +++ + ++DD V ++LE++LI SD+GV    K
Sbjct: 5   NFFSKEKKKTLDQGLSKTKESVFSKIARVVAGKSKVDDDVLDDLEEVLITSDVGVDTTLK 64

Query: 66  IVEELLTKR-YAKDVSVQRVLYDVSELIHKMLMPL---SKPFNWDFSHRPHVILVVGVNG 121
           I+E +  +    K V+ + +   + E I  +L+        F+      P+VI+VVGVNG
Sbjct: 65  IIERIENRVSKDKYVNTKELNAILREEIASLLIENKASDAAFDLPQRDTPYVIMVVGVNG 124

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGK++ K   AG  V L A DTFR+AA++QL+IW +R     +  ++GSD A++
Sbjct: 125 VGKTTTIGKIAAKFKAAGKSVYLGAADTFRAAAVEQLEIWGERVGVPVIKQKMGSDPASV 184

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P AP  VL VLD +T
Sbjct: 185 AFDTLSSAVANHADVVIIDTAGRLHNKINLMNELTKIKNVMKKIIPDAPSEVLLVLDGST 244

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA  Q + F        L +TK+DGTA+GG +I I    +IPV ++G+GEGI+DL+ F
Sbjct: 245 GQNAFEQAKQFTLATEVNSLAITKLDGTAKGGVVIGISDQFQIPVKYIGLGEGIDDLQVF 304

Query: 302 VAKDFSAVITG 312
             ++F   + G
Sbjct: 305 NKEEFVDSLFG 315


>gi|332528924|ref|ZP_08404891.1| signal recognition particle-docking protein FtsY [Hylemonella
           gracilis ATCC 19624]
 gi|332041585|gb|EGI77944.1| signal recognition particle-docking protein FtsY [Hylemonella
           gracilis ATCC 19624]
          Length = 332

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 122/313 (38%), Positives = 187/313 (59%), Gaps = 13/313 (4%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
                 W+ KL  G   T      GI  + +  R+DD + E+LE+ L+ +D GV   Q +
Sbjct: 24  PQAREGWLGKLRAGLRKT----GSGIATVFTGTRIDDALYEQLEEALLMADAGVKATQYL 79

Query: 67  VEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +++L  +      +    +  +  + + ++L PL +  N   +H+P VI+V GVNG GKT
Sbjct: 80  LDDLKHRVKESKATDPAAVKALLVDALTELLAPLEQTLNVG-AHKPTVIMVAGVNGAGKT 138

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----SADFVCSEIGSDAAAL 181
           T IGKL+  +++AG  V+LAA DTFR+AA +QL +WADR      +  +  + G D A++
Sbjct: 139 TSIGKLTHHLAEAGASVLLAAADTFRAAAREQLMVWADRNRQGTGSVDIVHQAGGDPASV 198

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A    +A+  DV+++DTAGRL     LM  I K+ RV+++ D  APH VL V+D  T
Sbjct: 199 CFDAVSAGKARGKDVVLVDTAGRLPTQLHLMEEIKKIKRVVQKADETAPHEVLLVIDGNT 258

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK---IPVYFLGVGEGINDL 298
           GQNAL QV+ F    G TGLI+TK+DGTA+GG L  I +  +   +PVYF+GVGE +++L
Sbjct: 259 GQNALTQVKAFDEALGLTGLIVTKLDGTAKGGVLAAIALLSRERPLPVYFIGVGEQLDEL 318

Query: 299 EPFVAKDFSAVIT 311
           E F A++F+  + 
Sbjct: 319 ETFEAREFAQALL 331


>gi|256824943|ref|YP_003148903.1| signal recognition particle subunit FFH/SRP54 (srp54) [Kytococcus
           sedentarius DSM 20547]
 gi|256688336|gb|ACV06138.1| signal recognition particle subunit FFH/SRP54 (srp54) [Kytococcus
           sedentarius DSM 20547]
          Length = 604

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 137/322 (42%), Gaps = 34/322 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L     ++    +L +        ++   L+ +D+ + V ++    +  +   
Sbjct: 2   FNSLSDRLTLTFGNLKRKGKLTESDVNATVRDIRLALLDADVALPVVKQFTSVVRERATG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   ++   +     P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVVKIVNEELVDILGGETRTIRF-AKRPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE------------------ 173
              +   G   +L A D  R  A++QL++  +R        E                  
Sbjct: 121 GHWLKQQGHTPLLVACDLQRPNAVNQLQVVGERAGVPVYAPEKGNVFGHDAALDTGEGTR 180

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D   +A     Q QA++ DV+IIDTAGRL  +  LM     +   +       P  V
Sbjct: 181 SFGDPVEVARRGVAQGQARQHDVVIIDTAGRLAVDENLMQQAADIRAAVN------PEEV 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+DA  GQ A+     F      TG++++K+DG ARGG  + +      PV F   GE
Sbjct: 235 LFVIDAMIGQAAIDTAMAFDEGVNFTGVVLSKLDGDARGGAALSVASVTGKPVMFASTGE 294

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
            + D E F     ++ I    D
Sbjct: 295 QVKDFEVFHPDRMASRILDMGD 316


>gi|153853251|ref|ZP_01994660.1| hypothetical protein DORLON_00645 [Dorea longicatena DSM 13814]
 gi|149754037|gb|EDM63968.1| hypothetical protein DORLON_00645 [Dorea longicatena DSM 13814]
          Length = 317

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 183/303 (60%), Gaps = 4/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL  G   T   +  G+  I     R+DD   EELE++LI  D+GV     I+++
Sbjct: 1   MGFFEKLVAGLGKTRDNIVSGMDSIFHGFSRIDDDFYEELEEVLIMGDLGVQATYDILDD 60

Query: 70  LLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K +         + E I + +        ++F +R  V++V+GVNGVGKTT I
Sbjct: 61  LKAKVKEKHIKEPMECRELLIESIKEQMDIGETA--YEFENRTSVVMVIGVNGVGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ K+     KV++AA DTFR+AA +QLK WA+R+ A+ +  + GSD A++ ++A   
Sbjct: 119 GKLAGKLRAENKKVVIAAADTFRAAAGEQLKEWANRSQAELIGGQEGSDPASVVFDAVAA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+  DVL+IDTAGRLHN   LM  + KM +++ R  P A    L VLDATTGQNAL+Q
Sbjct: 179 AKARHADVLMIDTAGRLHNKKNLMEELRKMNKIIDREFPEAYRETLVVLDATTGQNALQQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+ VA  TG+++TKMDGTA+GG  + I     +PV ++GVGE I+DL+ F A DF  
Sbjct: 239 AKEFNDVAEITGIVLTKMDGTAKGGIAVAIHAELGVPVKYIGVGETIDDLQKFNADDFVN 298

Query: 309 VIT 311
            + 
Sbjct: 299 ALF 301


>gi|329947898|ref|ZP_08294830.1| signal recognition particle protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328523522|gb|EGF50620.1| signal recognition particle protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 562

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S ++      +    RL     +    E+   L+ +D+ + V +     +  K   
Sbjct: 2   FGNLSDRITASFNQLRGKGRLTAADVNATVTEIRRALLEADVALPVVRAFTSAVREKAVD 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              S      Q+V+  V+E + ++L   ++  NW     P +I++ G+ G GKTT+ GKL
Sbjct: 62  AARSQALNPGQQVVKIVNEELIEVLGGETREINW-ADRGPTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + + D G +V+L A D  R  A+ QL + A+R        E G+   D  A+A    +Q
Sbjct: 121 GRWLRDQGKRVLLVASDLQRPNAVTQLSVVAERAGVHVWAPEPGNGVGDPVAVARSGVEQ 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGRL  ++ +M         ++  D   PH +L VLDA  GQ+A+  
Sbjct: 181 ARTNGYDVVVVDTAGRLGVDAEMMDQ------AIRIRDAVVPHEILFVLDAMVGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G TG++++K+DG ARGG  + +      PV F   GEG+ D E F A   ++
Sbjct: 235 SVAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGAPVLFSSTGEGLTDFERFHADRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|269925892|ref|YP_003322515.1| signal recognition particle-docking protein FtsY [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789552|gb|ACZ41693.1| signal recognition particle-docking protein FtsY [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 314

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 110/299 (36%), Positives = 159/299 (53%), Gaps = 2/299 (0%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            K+  G   +   +   +  +     + D   EELE+LLI +D+GV     +++ L  + 
Sbjct: 17  EKIESGLEKSRRGIFSQVAALFDREEITDSTWEELEELLIAADVGVETTLMLLDVLQDRV 76

Query: 75  YAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            A+ +     L   + E +  +L                V+L+VGVNGVGKTT + KL+ 
Sbjct: 77  EAERIRRPSELRKALKEELQAILDSAPNQPVEVNDGELLVMLIVGVNGVGKTTTVAKLAH 136

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K +  G KV++ A DTFR+AAIDQL+IW +R     +     SD AA+ ++A   A+++ 
Sbjct: 137 KFASEGAKVVVGAADTFRAAAIDQLQIWGERAGVPVIAGAPNSDPAAVVHDALAAARSRS 196

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DVLI+DTAGRLH    LM  + K+ RV+ R    A    L VLDATTGQN L Q   F 
Sbjct: 197 ADVLIVDTAGRLHTKYNLMEELKKIQRVIDRNGSPAQ-ENLLVLDATTGQNGLVQARKFA 255

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                 G+++ KMDGTA+GG    IV   KIP+ +L  GE + D+  F +KDF   + G
Sbjct: 256 QAVHLDGVVLAKMDGTAKGGIAFAIVNEMKIPIRYLTTGEKLGDIAEFDSKDFVNALLG 314


>gi|294785356|ref|ZP_06750644.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           3_1_27]
 gi|294487070|gb|EFG34432.1| signal recognition particle-docking protein FtsY [Fusobacterium sp.
           3_1_27]
          Length = 344

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 117/297 (39%), Positives = 181/297 (60%), Gaps = 3/297 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +++    +       + +I +S+ ++DD + EELEDLL++SD+G+ +   ++ +L  +  
Sbjct: 48  ISQRLTKSKEGFFSKLKNIFTSKSKVDDSIYEELEDLLLQSDVGLNMTTNLINQLEKEVK 107

Query: 76  AKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           +K V     +Y  +  L+ + L+        +  ++ +VIL+VGVNGVGKTT IGKL+ K
Sbjct: 108 SKKVDNTNEVYEILKRLMSEFLLSQDSKIYLE-DNKINVILIVGVNGVGKTTTIGKLALK 166

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             + G KV+L AGDTFR+AA++QL+ WA R   D V    G+D A++ Y+   +A+  K 
Sbjct: 167 YKNLGKKVLLGAGDTFRAAAVEQLEEWAKRADVDIVKGREGADPASVVYDTLSRAEITKA 226

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+IIDTAGRLHN + LM  + K+  ++K+      +  L V+D TTGQN L Q + F++
Sbjct: 227 DVVIIDTAGRLHNKANLMRELEKINNIIKKKIGEQEYESLLVIDGTTGQNGLNQAKEFNS 286

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           V   TG I+TK+DGTA+GG +  +    K P+ F+G+GE I DL  F AKDF   I 
Sbjct: 287 VTALTGFIVTKLDGTAKGGIVFSVSEELKKPIKFIGLGEKIGDLIEFNAKDFVEAIF 343


>gi|160897244|ref|YP_001562826.1| signal recognition particle-docking protein FtsY [Delftia
           acidovorans SPH-1]
 gi|160362828|gb|ABX34441.1| signal recognition particle-docking protein FtsY [Delftia
           acidovorans SPH-1]
          Length = 406

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 183/311 (58%), Gaps = 7/311 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             +   +   +W+++L  G   T       I  + +  +++D + EELED L+ +D GV 
Sbjct: 101 KPEAEGASRQNWMQRLKTGLRKT----GSSIATVFTGTQINDALYEELEDALLMADTGVK 156

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVN 120
             + ++ +L  +      +    +  +       L+ PL KP      H+P VI+V GVN
Sbjct: 157 ATEHLLADLRRRVKEAKATDPAAVKALLADALADLLRPLEKPLVIG-EHQPTVIMVAGVN 215

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL++ ++D G  V+LAA DTFR+AA +QL +WA+R + + V S+ G D AA
Sbjct: 216 GAGKTTSIGKLTRHLADEGQSVLLAAADTFRAAAREQLGVWANRNTVEIV-SQEGGDPAA 274

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           ++++A    +A+K DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  
Sbjct: 275 VSFDAVTAGRARKKDVVLVDTAGRLPTQLHLMEELRKIRRVVSKADATAPHEVLLVIDGN 334

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV  F      TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DLE 
Sbjct: 335 TGQNALAQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKVEDLET 394

Query: 301 FVAKDFSAVIT 311
           F A++F+  + 
Sbjct: 395 FNAREFAQALL 405


>gi|260435905|ref|ZP_05789875.1| cell division protein FtsY [Synechococcus sp. WH 8109]
 gi|260413779|gb|EEX07075.1| cell division protein FtsY [Synechococcus sp. WH 8109]
          Length = 504

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 174/312 (55%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V+ E + W+ +L +G   T       + + +    L   V ++LE LL+R+D GV    
Sbjct: 190 QVSLEEIDWLGRLRRGLEKTRQGFVTSLLENLGDDPLTPEVLDDLETLLLRADAGVQATD 249

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVN 120
           ++++ L  +   + V     +  + E +  +L         P       R ++ L+VGVN
Sbjct: 250 QVLDALRQRMNEEVVDPAEGIRFLKEQLRGLLDAPIQASGVPLLAPERDRLNIWLMVGVN 309

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W +R+    V +   + D A
Sbjct: 310 GVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVEVWGERSDVPVVSNPSSNADPA 369

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+++K D+L++DTAGRL     LM  + K+ +++ RL P A    L VLDA
Sbjct: 370 AVVFDAIGAARSRKSDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEAKVESLLVLDA 429

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN LRQ   F   AG TG+++TK+DGTARGG  + +     +P+ F+G GEGI DL 
Sbjct: 430 SQGQNGLRQAMAFAQAAGLTGVVITKLDGTARGGVALAVSSEAGLPIRFIGAGEGIRDLR 489

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 490 PFNSFEFVEALL 501


>gi|126283547|ref|XP_001363021.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 504

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      +P+VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKPNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|85714453|ref|ZP_01045441.1| Signal recognition particle protein [Nitrobacter sp. Nb-311A]
 gi|85698900|gb|EAQ36769.1| Signal recognition particle protein [Nitrobacter sp. Nb-311A]
          Length = 511

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 138/305 (45%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +     L +   +    E+   L+ +D+ + V +   +++  +   
Sbjct: 2   FDNLSERLGGILDRLTRRGALTEADVDAAMREVRRALLEADVSLDVVRSFTDKVREQAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + +   L    +  + +    P  I++VG+ G GKTT   KL
Sbjct: 62  ATVVKSVTPGQMVVKIVHDELIATLGSDGQTIDLNAV-PPITIMMVGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++++    KV++A+ D +R AA++QL +         +   +G     +A  A +  +
Sbjct: 121 ARRLTERDKRKVLMASLDIYRPAAMEQLAVLGRDLDIKTLPIVVGQKPEQIARRALEAGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  +M+    +           PH VL V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRTTLDEEMMSEAANIKTA------AHPHEVLLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE  + LE F     +  I
Sbjct: 235 SFDERVGLTGIVLTRVDGDGRGGAALSMRQVTGKPIKLIGTGEKTDALEDFHPSRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|294495522|ref|YP_003542015.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanohalophilus mahii DSM 5219]
 gi|292666521|gb|ADE36370.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanohalophilus mahii DSM 5219]
          Length = 439

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 148/304 (48%), Gaps = 22/304 (7%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
              S  L++ +  ++ + R+D+     V ++++  L++SD+ V +  ++ + +  +   +
Sbjct: 4   DKLSNSLQDALKKLVGAGRIDERTVNDVVKDIQRALLQSDVNVKMVMQLSKSIKERALDE 63

Query: 78  DVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           DV       + V+  V E + K++         D   +P  I+++G+ G GKTT   KL+
Sbjct: 64  DVPQGMNPREHVIRIVYEELMKIVGEG-----TDIPLKPQKIMMIGLQGSGKTTTTAKLA 118

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +     GLK  +   DTFR  A  QLK   +  +  F   E   DA  +       A+  
Sbjct: 119 RYFQRKGLKPAVVCADTFRPGAYQQLKTLCESLNVAFYGEEGNPDAVGIVERGL--AEID 176

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K DV IIDTAGR    S L+  + ++  +       +P   L VLDA  GQ A  Q + F
Sbjct: 177 KYDVKIIDTAGRHSLESDLIDEMERIHAI------SSPDYKLLVLDAGIGQQASEQAKAF 230

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +   G +G++++K+DGTA+GGG +  V      + F+GVGE   DLE F A  F + + G
Sbjct: 231 NDSVGISGVVISKLDGTAKGGGAMSAVAATDSSIAFIGVGETPQDLEKFEADRFISRLLG 290

Query: 313 CLDY 316
             D 
Sbjct: 291 MGDL 294


>gi|299531836|ref|ZP_07045237.1| signal recognition particle-docking protein FtsY [Comamonas
           testosteroni S44]
 gi|298720156|gb|EFI61112.1| signal recognition particle-docking protein FtsY [Comamonas
           testosteroni S44]
          Length = 385

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 125/311 (40%), Positives = 183/311 (58%), Gaps = 7/311 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  +  +   +W+ +L  G   T       I  + +  ++DD + EELED L+ +D GV 
Sbjct: 80  AKPQAPNSRQNWMERLKAGLRKT----GSSIATVFTGTQIDDRLYEELEDALLMADTGVK 135

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVN 120
             Q ++E+L  +      +    +  +       L+ PL KP +    H P VI+V GVN
Sbjct: 136 ATQHLLEDLKRRVKETKTTEPAAVKALLADALTDLLRPLEKPLSIG-EHTPTVIMVAGVN 194

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+K ++D    V+LAA DTFR+AA +QL +WA+R + + + S+ G D AA
Sbjct: 195 GAGKTTSIGKLTKHLADGEQSVLLAAADTFRAAAREQLGVWANRNTVEII-SQDGGDPAA 253

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           ++++A    +A+K DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  
Sbjct: 254 VSFDAVSAGKARKKDVVLVDTAGRLPTQLHLMEELKKIKRVVSKADGTAPHEVLLVIDGN 313

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV  F      TGLI+TK+DGTA+GG L  I     +PVYF+GVGE I DLE 
Sbjct: 314 TGQNALTQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKIEDLET 373

Query: 301 FVAKDFSAVIT 311
           F A++F+  + 
Sbjct: 374 FSAREFAQALL 384


>gi|300702995|ref|YP_003744597.1| signal recognition particle (srp) component with 4.5S RNA (ffs)
           [Ralstonia solanacearum CFBP2957]
 gi|299070658|emb|CBJ41953.1| Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
           [Ralstonia solanacearum CFBP2957]
          Length = 478

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 86/325 (26%), Positives = 145/325 (44%), Gaps = 37/325 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   LDNLTQRLARVVKTMRGEARLTEANTAEMLREVRLALLEADVALPVVREFIARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSK--------------------PFNWDFSHRP 111
           +DV       Q ++  V   +  ++                           N +    P
Sbjct: 62  EDVLTSLSPGQALVGIVQRELTAIIGGEEAVAGAAPGPAGAPGLSMGRAAELNLNV-QPP 120

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFV 170
            +IL+ G+ G GKTT +GKL+K + +   K +   + D +R AAI QLK  +++  ADF 
Sbjct: 121 AIILMAGLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFF 180

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S+       +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK       
Sbjct: 181 PSQPDQKPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHAALKPA----- 235

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L V+DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+G
Sbjct: 236 -ETLFVVDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGKPIKFVG 294

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
           V E ++ LEPF     +  I G  D
Sbjct: 295 VAEKLDGLEPFYPDRMAQRILGMGD 319


>gi|317495250|ref|ZP_07953620.1| signal recognition particle protein [Gemella moribillum M424]
 gi|316914672|gb|EFV36148.1| signal recognition particle protein [Gemella moribillum M424]
          Length = 450

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 144/306 (47%), Gaps = 20/306 (6%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L+  I  +    ++ +     +  E+   L+ +D+   V +  V+++  +  
Sbjct: 2   AFENLSERLQNTIAKLTGKGKVSEADVKEMMREVRLALLEADVNFKVVKDFVKKISERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E + ++L   +   N     +    ++VG+ G GKTT  GK
Sbjct: 62  GTEVMKSLTPAQQIVKIVNEELVELLGGTNVELNQG--GKITTTMMVGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+     K  +L A D +R AA+ QLK    +   +     +  D   +  E  + A
Sbjct: 120 LALKVKKTMKKKPLLIAADVYRPAAVQQLKTLGKQLDIEVF--YVDKDPVDIVKEGLEFA 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    + +IIDTAGRLH + +LM  +  +   +       P  +L V+DA  GQ A+   
Sbjct: 178 REHYYNYVIIDTAGRLHIDELLMDELKDIKSAVN------PDEILLVVDAMIGQEAVNIA 231

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F      TGL++TK+DG  RGG  + I      P+  +G+GE +NDLE F  +  ++ 
Sbjct: 232 TSFDEQLDITGLVLTKLDGDTRGGAALSIKSITGKPIKLVGMGEKMNDLELFHPERMASR 291

Query: 310 ITGCLD 315
           I G  D
Sbjct: 292 ILGMGD 297


>gi|160901803|ref|YP_001567384.1| signal recognition particle protein [Petrotoga mobilis SJ95]
 gi|160359447|gb|ABX31061.1| signal recognition particle protein [Petrotoga mobilis SJ95]
          Length = 439

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 145/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELEDL---LIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL     ++    +L +  +++ + ++   L+ +D+   V +++++ +  +   
Sbjct: 2   FENLQKKLTGVFKNLSGKGKLSEKNIKDAVREVKLSLLEADVHYKVVKELIDRVKEEAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q  +  V + + +++    +      S  P  I++ G+ G GKT+   KL
Sbjct: 62  SKVLESLTPDQEFIRIVRDDLIELMGG-KENNKITISRNPGFIMLTGLQGSGKTSTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G   +L A DT+R AAIDQL    +         +   +A  +  E+ K A+ 
Sbjct: 121 ANFYKKKGKNPLLVAADTYRPAAIDQLVQLGEDIGIPVFTGD-RVNALKIIEESKKYAEK 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRLH +  +M  +  + +++       P  +L V+D+  GQ+A+   + 
Sbjct: 180 LLHDIVIVDTAGRLHIDEKMMEELENIKKLIN------PDEILMVVDSMVGQDAVNSAKE 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     +G +++K+DG +RGG +I I      PV  +GVGE I+DLE F    +   I 
Sbjct: 234 FNDKLDLSGFVVSKLDGDSRGGVIISIRYITGKPVKLVGVGEKIDDLEEFYPDRYVGRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|195952674|ref|YP_002120964.1| signal recognition particle protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932286|gb|ACG56986.1| signal recognition particle protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 435

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 21/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               + K+   +  +  +++L++        ++   L+ +D+   VA+  ++ L  + ++
Sbjct: 2   LELLTEKISGSLEKLKGAKKLNEKLVNDTLRDIRAALLEADVDYDVAKDFIKRLRERIFS 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++         ++  V + + K L   + P          V++ VG+ G GKTT IGKL
Sbjct: 62  EEIKTHLSPTDMIIMSVYDELVKTLGGNASPLEEG------VVMFVGLQGTGKTTTIGKL 115

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  M   G  VM  + D  R AA+ QLK  ++    +++      +   +A EAF+  ++
Sbjct: 116 ANLMKKNGRSVMTVSTDVRRPAAMLQLKRVSELAGVEYLEFSPDKNPVDIAKEAFEAFKS 175

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           KK D L +DTAGRLH ++ LM  +  +   +K      P  V+ V D+  GQ AL   + 
Sbjct: 176 KKYDYLFLDTAGRLHIDNELMEELRAIKEAVK------PSEVIYVADSMQGQEALSVAKT 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ V G TG I+TKMDG  RGG  + I     IP+ ++GVGE + D++ F     +  I 
Sbjct: 230 FNEVVGLTGAILTKMDGDTRGGVALSIKDAIGIPIKYIGVGEKLEDIDQFYPDRIAQRIL 289

Query: 312 GCLDY 316
           G  D 
Sbjct: 290 GLGDL 294


>gi|320532006|ref|ZP_08032899.1| signal recognition particle protein [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320135770|gb|EFW27825.1| signal recognition particle protein [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 561

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S ++      +    RL +        E+   L+ +D+ + V +     +  K   
Sbjct: 2   FGNLSDRITASFNQLRGKGRLTEADVNATVTEIRRALLEADVALPVVRAFTAAVREKAVD 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              S      Q+V+  V+E + ++L   ++  +W     P +I++ G+ G GKTT+ GKL
Sbjct: 62  AARSQALNPGQQVVKIVNEELIEVLGGQTREIHW-ADRGPTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + + D G +V+L A D  R  A+ QL + A+R        E G+   D  A+A    + 
Sbjct: 121 GRWLRDQGKRVLLVASDLQRPNAVTQLSVVAERAGVHVWAPEPGNGVGDPVAVARSGVEH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGRL  ++ +M         ++  D  +PH +L VLDA  GQ+A+  
Sbjct: 181 ARTNGYDVVVVDTAGRLGVDAEMMDQ------AIRIRDAVSPHEILFVLDAMVGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G TG++++K+DG ARGG  + +      PV F   GEG+ D E F A   ++
Sbjct: 235 SVAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGAPVLFSSTGEGLTDFERFHADRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|288923592|ref|ZP_06417702.1| signal recognition particle-docking protein FtsY [Frankia sp.
           EUN1f]
 gi|288345054|gb|EFC79473.1| signal recognition particle-docking protein FtsY [Frankia sp.
           EUN1f]
          Length = 438

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 112/310 (36%), Positives = 171/310 (55%), Gaps = 4/310 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V + ++  I +L    A +   L  G+  ++S   LD+   E++E  L+ +D+GVA   
Sbjct: 128 EVPAPAMGRIVRLRARLARSQNALGRGLLALLSGDNLDEEAWEDVESTLLVADVGVAATA 187

Query: 65  KIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           ++V+ L    K      +         EL+ ++   + +        RP ++LVVGVNG 
Sbjct: 188 EMVDALRERTKVLGARTAADARAMLRDELLAQVGTSMDRSLRTSAPDRPAILLVVGVNGT 247

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GK+++ +   G  V+L A DTFR+AA DQL+ W  R  A  V    G D A++A
Sbjct: 248 GKTTTCGKIARLLVAEGRSVVLGAADTFRAAAADQLETWGGRVGATTVRGPEGGDPASVA 307

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K+      D +++DTAGRLH    LM  + K+ RV+ +  P     VL VLD+TTG
Sbjct: 308 FDAVKRGIDDGADTVLVDTAGRLHTKVGLMDELSKIKRVVGKQSP--VDEVLLVLDSTTG 365

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q  +F      TG+++TKMDGTA+GG +I +     +PV  +G+GEG +DL PF 
Sbjct: 366 QNALTQARVFTEAVDITGVVLTKMDGTAKGGIVIAVQRELGVPVKLIGLGEGPDDLAPFE 425

Query: 303 AKDFSAVITG 312
           A+ F   + G
Sbjct: 426 AEAFVDALLG 435


>gi|94984837|ref|YP_604201.1| signal recognition particle-docking protein FtsY [Deinococcus
           geothermalis DSM 11300]
 gi|94555118|gb|ABF45032.1| signal recognition particle-docking protein FtsY [Deinococcus
           geothermalis DSM 11300]
          Length = 317

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 124/319 (38%), Positives = 177/319 (55%), Gaps = 27/319 (8%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-----RRLDDGVREELEDLLIRSDIGVAVAQK 65
           +SW+ +L  G + T  +L E   D+ +       RLD    E+LE  LI +D+G A  ++
Sbjct: 1   MSWLARLRDGLSKTRKQLNEAAGDLGTDVREALTRLD--TVEDLEYALIAADVGRAATEE 58

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWD------------FSHRPH 112
           I+E++         S +R L D + + +   L P ++   +                R H
Sbjct: 59  ILEDVKA-------SDRRNLQDALMDALTLQLEPDARRAQFRKLGFTPDARRTVVDPRGH 111

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V+++VGVNGVGKTT I KL +     G  VM AAGDTFR+AA  QL +W +R     V  
Sbjct: 112 VVMIVGVNGVGKTTTIAKLGQYYMGRGKTVMFAAGDTFRAAAGAQLGVWGERLGVPVVQG 171

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G D AA+A++A     A+  D+L +DTAGRLH    LM  + K+ RV+ + DP  P  
Sbjct: 172 PEGGDPAAVAFDAATARAARGTDLLFVDTAGRLHTKHNLMEELKKVRRVIDKADPGEPAE 231

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V  VLDA TGQN L Q + FH     TG+I+TK+DGTA+GG LIPIV    +P+ F+GVG
Sbjct: 232 VWLVLDAVTGQNGLAQAKKFHEATPLTGVIVTKLDGTAKGGILIPIVRELGVPIKFIGVG 291

Query: 293 EGINDLEPFVAKDFSAVIT 311
           E  +DL+PF +++F   + 
Sbjct: 292 EQPDDLQPFDSREFVRALF 310


>gi|302380338|ref|ZP_07268808.1| signal recognition particle-docking protein FtsY [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233693|ref|ZP_07320347.1| signal recognition particle-docking protein FtsY [Finegoldia magna
           BVS033A4]
 gi|302311828|gb|EFK93839.1| signal recognition particle-docking protein FtsY [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495127|gb|EFL54879.1| signal recognition particle-docking protein FtsY [Finegoldia magna
           BVS033A4]
          Length = 378

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 178/302 (58%), Gaps = 3/302 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  KL      T   +   I  ++++ R +D+ + EE+E+ LI +DIGV    KIV +L
Sbjct: 77  GFFEKLKNSLLKTRDNISNKIDQVLANYRTVDEELFEEIEETLISADIGVDTTLKIVGQL 136

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +   +++     + +V ++++ + ++      N +   +  +ILVVGVNGVGKTT IG
Sbjct: 137 RDQVKLRNIQDPSKIKNVLADILKENIINDKIDNNLNVDEK-TIILVVGVNGVGKTTTIG 195

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K    G KV++ A DTFR+AAI+QL  W++R   D +  + G+D A++ ++     
Sbjct: 196 KLAMKYKKDGKKVLMVAADTFRAAAIEQLTEWSNRAKVDIISHKEGADPASVVFDGVNAM 255

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +++  D+LI DTAGRLHN   LM  + K+ RV+++  P A   +L ++D TTGQNA+ Q 
Sbjct: 256 KSRNTDILICDTAGRLHNKKNLMNELNKIKRVIEKEYPEAKKEILLIVDGTTGQNAIIQA 315

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG I+TK+DGTA+GG + P+ +   IPV F+G+GE +NDL  F  + F   
Sbjct: 316 KEFMNATDLTGAIITKLDGTAKGGMIFPLEMELGIPVKFIGIGEQVNDLVKFEPEKFIEA 375

Query: 310 IT 311
           I 
Sbjct: 376 II 377


>gi|302386301|ref|YP_003822123.1| signal recognition particle-docking protein FtsY [Clostridium
           saccharolyticum WM1]
 gi|302196929|gb|ADL04500.1| signal recognition particle-docking protein FtsY [Clostridium
           saccharolyticum WM1]
          Length = 313

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 124/305 (40%), Positives = 181/305 (59%), Gaps = 4/305 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   +  KL  G   T   +  G+  I S    +DD   EE+E++LI  D+G+     I+
Sbjct: 3   EKKGFFGKLVAGLQKTRDNIIAGVDSIFSGFSAIDDEFYEEIEEILIMGDLGIQTTMSIM 62

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTT 126
           EEL  K   +++        +  L+  ++  +      ++F  +  V+LV+GVNGVGKTT
Sbjct: 63  EELRKKVKEQNIKDPLECKQL--LMDSIMEQMDLGENAYEFEKQRSVLLVIGVNGVGKTT 120

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL+ +M D G KV++AA DTFR+AAI+QL  WA R   D +  + GSD AA+ ++A 
Sbjct: 121 SVGKLAGQMKDDGKKVIVAAADTFRAAAIEQLSEWAKRAGVDIIAQQEGSDPAAVVFDAV 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+++  D+LI DTAGRLHN   LM  + K+ R++ +  P A    L VLD TTGQNAL
Sbjct: 181 AAAKSRHADILICDTAGRLHNKKNLMEELKKINRIIDKEYPEAYRETLVVLDGTTGQNAL 240

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F  VA  TG+I+TK+DGTA+GG  + I     IPV ++GVGE I+DL+ F AK+F
Sbjct: 241 VQAKQFMEVADITGIILTKLDGTAKGGIAVAIQSELGIPVKYIGVGEKIDDLQKFNAKEF 300

Query: 307 SAVIT 311
            + + 
Sbjct: 301 VSALF 305


>gi|296270735|ref|YP_003653367.1| signal recognition particle-docking protein FtsY [Thermobispora
           bispora DSM 43833]
 gi|296093522|gb|ADG89474.1| signal recognition particle-docking protein FtsY [Thermobispora
           bispora DSM 43833]
          Length = 391

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 124/311 (39%), Positives = 183/311 (58%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   S   + +L    A +   +  G+ +++S  RLDD V +E+E+ LI +D+GVA  +
Sbjct: 82  EVPPPSAGRMVRLRSRLARSQNVIGRGLLELLSRDRLDDEVWDEIEETLITADVGVAPTR 141

Query: 65  KIVEELLTKRY--AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNG 121
            +VE L TK          +       EL+ ++   L +    + +  RP V+L+VGVNG
Sbjct: 142 AMVENLRTKVKVLGTRTEEELRALLREELLAQVGPDLDRTLRTEPTGERPAVVLIVGVNG 201

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G KV+L A DTFR+AA DQL+ W +R  A  V    G+D A++
Sbjct: 202 TGKTTTAGKLARALVGDGKKVLLGAADTFRAAAADQLQTWGERVGAAVVRGPEGADPASV 261

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A  +  A KVD +I+DTAGRLH    LM  +GK+ RV+++        VL VLDATT
Sbjct: 262 AFDAVAKGIADKVDTVIVDTAGRLHTKVGLMDELGKIKRVIEKK--AQVDEVLLVLDATT 319

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN +RQ ++F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 320 GQNGMRQAQVFAEVVDVTGIVLTKLDGTAKGGIVISVQRELGVPVKLVGLGEGPDDLAPF 379

Query: 302 VAKDFSAVITG 312
             K F   I G
Sbjct: 380 DPKLFVDAIVG 390


>gi|90421745|ref|YP_530115.1| signal recognition particle protein [Rhodopseudomonas palustris
           BisB18]
 gi|90103759|gb|ABD85796.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Rhodopseudomonas palustris BisB18]
          Length = 514

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 142/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL   +  +     L +   +    E+   L+ +D+ + V +   +++  +   
Sbjct: 2   FDNLSEKLGGILNRLTRRGSLTEADVDAAMREVRRALLEADVSLDVVKSFTDKVREQAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + +   L   ++  + +    P  I++VG+ G GKTT   KL
Sbjct: 62  ATVVKSVTPGQMVVKIVHDELVATLGSDAQIIDLNAV-PPVPIMMVGLQGSGKTTTTAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++      +V++A+ D +R AA++QL I       D +    G   A +A  A + A+
Sbjct: 121 ARRLTQRDKRRVLMASLDVYRPAAMEQLAILGRDLEIDTLPIVDGQKPAQIARRAIEAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  +MA   ++  V       +PH VL V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRTTLDDEMMAEAAEIKAV------ASPHEVLLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE  + LE F     +  I
Sbjct: 235 AFDTQVGLTGIVLTRVDGDGRGGAALSMRAVTGKPIKLMGTGEKTDALEDFHPSRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|170046875|ref|XP_001850971.1| signal recognition particle 54 kda protein [Culex quinquefasciatus]
 gi|167869479|gb|EDS32862.1| signal recognition particle 54 kda protein [Culex quinquefasciatus]
          Length = 515

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  ++    D + +E+   L+ +D+ + + +K+ E + +    
Sbjct: 14  LADLGRKITNALHSLSKATIINAEVLDAMLKEICTALLEADVNIRLVKKLRENVKSVIDF 73

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      RP++I+ VG+ G GKTT   KL
Sbjct: 74  DEMAGGLNKRRMIQTAVFKELVKLVDPGVKPYQ-PVKGRPNIIMFVGLQGSGKTTTCTKL 132

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +  +  + 
Sbjct: 133 AYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVVIAQDGVEMFKK 192

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  + +I+DT+GR      L   +  +   +K      P +++ V+DAT GQ    Q + 
Sbjct: 193 EGFEFIIVDTSGRHKQEESLFEEMLAVATAIK------PDNIIFVMDATIGQACEAQAKA 246

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F + + 
Sbjct: 247 FKEKVDIGSVIITKLDGHAKGGGALSAVAATSSPIIFIGTGEHIDDLEPFKTKPFISKLL 306

Query: 312 GCLD 315
           G  D
Sbjct: 307 GMGD 310


>gi|222112013|ref|YP_002554277.1| signal recognition particle-docking protein ftsy [Acidovorax ebreus
           TPSY]
 gi|221731457|gb|ACM34277.1| signal recognition particle-docking protein FtsY [Acidovorax ebreus
           TPSY]
          Length = 382

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 181/311 (58%), Gaps = 7/311 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
              K       W+ +L  G   T       I  + +  +++D + +ELE+ L+ +D GV 
Sbjct: 77  PTPKPGGARQGWMDRLKSGLRKT----GSSIATVFTGTQINDALYDELEEALLMADTGVK 132

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             Q ++E+L  +      +    +   +++ +  +L PL KP      H P VI+V GVN
Sbjct: 133 ATQHLLEDLKRRVKETKTTEPAAVKGLLADALADLLRPLEKPLVIG-EHTPTVIMVAGVN 191

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+K ++D G  V+LAA DTFR+AA +QL +WA R + + V S+ G D AA
Sbjct: 192 GAGKTTSIGKLTKHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEIV-SQEGGDPAA 250

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           ++++A    +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  
Sbjct: 251 VSFDAVTAGRARGKDVVLVDTAGRLPTQLHLMEELKKIRRVVTKADASAPHEVLLVIDGN 310

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV  F      TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DLE 
Sbjct: 311 TGQNALAQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLET 370

Query: 301 FVAKDFSAVIT 311
           F A++F+  + 
Sbjct: 371 FSAREFAQALL 381


>gi|320161007|ref|YP_004174231.1| signal recognition particle protein [Anaerolinea thermophila UNI-1]
 gi|319994860|dbj|BAJ63631.1| signal recognition particle protein [Anaerolinea thermophila UNI-1]
          Length = 440

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 151/305 (49%), Gaps = 20/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L++  T++    +L     D V  E+   L+ +D+  +V +  V  +  +   
Sbjct: 2   FETLTQRLEQIFTNLRRRGKLTEQDVDAVMREVRLALLEADVHYSVVKDFVSRVRERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGK 130
            +VS      Q+V+  V E + K L    +P   + +  +P  +++VG+ G GKTT   K
Sbjct: 62  AEVSRALNPAQQVIKIVHEELIKTLG---EPQWLNLTGPKPRALMLVGLQGSGKTTAAAK 118

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ +   G +V+L A D +R AA+ QL+   ++        E       L  +A++ AQ
Sbjct: 119 LARLLRSQGERVLLVAADPYRPAAVKQLQTLGEKVGVPVYY-EEKVAPPLLCAKAYEHAQ 177

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
                V+I+DTAGR   +  LMA +  +       D  +P  +L V+D+  GQ AL   +
Sbjct: 178 KGGYSVIIMDTAGRSQLDDALMAELKAI------TDKVSPADILLVVDSMIGQEALHVAQ 231

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TGLIMTKMDG +RGG  I I     +P+ FLG GEGI+ LE +     ++ I
Sbjct: 232 GFRQAVNLTGLIMTKMDGDSRGGAAISIRSVTGVPIKFLGTGEGIDALEVYDPSRLASRI 291

Query: 311 TGCLD 315
            G  D
Sbjct: 292 LGMGD 296


>gi|282899368|ref|ZP_06307336.1| Cell division transporter substrate-binding protein FtsY
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195735|gb|EFA70664.1| Cell division transporter substrate-binding protein FtsY
           [Cylindrospermopsis raciborskii CS-505]
          Length = 497

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 103/313 (32%), Positives = 181/313 (57%), Gaps = 5/313 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + ++ E ++W++KL +G   T   +   +  I+    L+     E+E +L+++D+GV   
Sbjct: 184 EDISIEEITWLKKLRQGLDKTRRNILNQLKAIVGQGPLNQDAVAEIEGILLQADVGVEAT 243

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFS---HRPHVILVVGV 119
             I++ L  K   +  + ++ +  + +++  ML  PL       F+    +  + L+ GV
Sbjct: 244 DLIIQSLQKKLRDEVTAPEQAIAYLKQILRDMLEKPLESSPRSGFAPEKDKLTIWLITGV 303

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGK++     +G   ++AA DTFR+AA++Q+K+W  R+  + + +    +D 
Sbjct: 304 NGAGKTTTIGKIAHLAQKSGYNCLIAAADTFRAAAVEQVKVWGSRSGVEVIANPGKNTDP 363

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQ++K ++L++DTAGRL N   LM  + K+ R++ +    A    L VLD
Sbjct: 364 AAIVFDAIAAAQSRKTELLLVDTAGRLQNKKNLMDELSKIRRIIDKKAADARVESLLVLD 423

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +T GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G GEGI DL
Sbjct: 424 STLGQNGLRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 483

Query: 299 EPFVAKDFSAVIT 311
            PF + +F   + 
Sbjct: 484 RPFSSYEFVEALL 496


>gi|194014310|ref|ZP_03052927.1| signal recognition particle protein [Bacillus pumilus ATCC 7061]
 gi|194013336|gb|EDW22901.1| signal recognition particle protein [Bacillus pumilus ATCC 7061]
          Length = 446

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ I+ I    ++ +     +  E+   L+ +D+   V +  V+++  +  
Sbjct: 2   AFEGLADRLQQTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V E + +++              P VI++VG+ G GKTT  GK
Sbjct: 62  GQEVMKSLTPGQQVIKVVKEELTELMGGEESKIAV-AKKSPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      + M+ A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKHNRQPMMVAADIYRPAAIQQLQTLGKQLDMPVFSLGDQVSPVEIAKQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D +I+DTAGRLH +  LM  + K+  V       +P  +  V+D+ TGQ+A+   
Sbjct: 181 KEEHHDYVILDTAGRLHIDEELMDELQKVKEV------ASPEEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I      P+ F  +GE ++ +EPF  +  ++ 
Sbjct: 235 KSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAALGEKLDAIEPFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|241664229|ref|YP_002982589.1| signal recognition particle protein [Ralstonia pickettii 12D]
 gi|240866256|gb|ACS63917.1| signal recognition particle protein [Ralstonia pickettii 12D]
          Length = 471

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 147/319 (46%), Gaps = 31/319 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   LDNLTQRLARVVKTMRGEARLTEANTAEMLREVRLALLEADVALPVVREFIARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIH--------------KMLMPLSKPFNWDFSHRPHVILVV 117
           +DV       Q ++  V   +                ++   +   N + +  P +IL+ 
Sbjct: 62  EDVITSLSPGQALVGIVQRELTAIIGGQEALEGVGSNIMGGRAAELNLNVT-PPAIILMA 120

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           G+ G GKTT +GKL+K + +   K +   + D +R AAI QLK  +++  ADF  S+   
Sbjct: 121 GLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFPSQPDQ 180

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
               +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK          L V
Sbjct: 181 KPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHARLKPA------ETLFV 234

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+GV E ++
Sbjct: 235 VDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDARGGAALSVRHITGKPIKFVGVAEKLD 294

Query: 297 DLEPFVAKDFSAVITGCLD 315
            LEPF     +  I G  D
Sbjct: 295 GLEPFYPDRMAQRILGMGD 313


>gi|332530704|ref|ZP_08406635.1| signal recognition particle protein [Hylemonella gracilis ATCC
           19624]
 gi|332039872|gb|EGI76267.1| signal recognition particle protein [Hylemonella gracilis ATCC
           19624]
          Length = 467

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 142/309 (45%), Gaps = 23/309 (7%)

Query: 24  TSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            + KL   + ++    R+ +     +  E+   L+ +D+ + V +  +  +  K   + V
Sbjct: 5   LTDKLSRIVKEMRGQARITEGNVADMLREVRMALLEADVALPVVRDFIARVKDKALGQAV 64

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWD-------FSHRPHVILVVGVNGVGKTTV 127
                  Q ++  V+  +   +  + +             +  P VIL+ G+ G GKTT 
Sbjct: 65  VGSLTPGQALVGVVNRELAATMGEVDESGALKGPADINLAAQPPAVILMAGLQGAGKTTT 124

Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL++ +      KV+  +GD +R AAI+QLK    +  A++  S      + +A  A 
Sbjct: 125 TAKLARHLITKRKKKVLTVSGDVYRPAAIEQLKTVTAQAGAEWFPSTPDQKPSDIARAAL 184

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+    DVL++DTAGRL  +  LM  I  +  +L       P   L V+DA  GQ+A+
Sbjct: 185 DYAKKHYFDVLLVDTAGRLAIDEALMKEIQDLHAILD------PVETLFVVDAMQGQDAV 238

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F      TG+++TKMDG +RGG  + +      P+ F GV E I+ LE F A+  
Sbjct: 239 NTAKAFKEALPLTGIVLTKMDGDSRGGAALSVRAVTGAPIKFAGVSEKIDGLEVFDAERH 298

Query: 307 SAVITGCLD 315
           +  + G  D
Sbjct: 299 AGRVLGMGD 307


>gi|192288677|ref|YP_001989282.1| signal recognition particle protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192282426|gb|ACE98806.1| signal recognition particle protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 516

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 138/305 (45%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL   +  +     L +   +    E+   L+ +D+ + V +   E +  +   
Sbjct: 2   FDNLSDKLGGILDRLTGRGALSEADVDAAMREIRRALLEADVALEVVRSFTERVREQAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++ +   L    +  + +    P  I++VG+ G GKTT   KL
Sbjct: 62  ATVVKSVKPGQMVVKIVNDELIATLGSEVQSIDLNAV-PPVPIMMVGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +++M++    KV++A+ D +R AA++QL +       D +    G     +A  A +  +
Sbjct: 121 ARRMTERDKRKVLMASLDVYRPAAMEQLAVLGRDLQIDTLPIVAGQQPPDIARRAMEAGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  +      M    +      PH VL V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRTTLDEDM------MAEAAEIKAAANPHEVLLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE  + LE F     ++ I
Sbjct: 235 AFDQRVGLTGIVLTRIDGDGRGGAALSMRAVTGKPIKLMGTGEKTDALEDFHPSRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|15807251|ref|NP_295981.1| signal recognition particle-docking protein FtsY [Deinococcus
           radiodurans R1]
 gi|6460064|gb|AAF11805.1|AE002058_5 signal recognition particle-docking protein FtsY [Deinococcus
           radiodurans R1]
          Length = 317

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 173/316 (54%), Gaps = 21/316 (6%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGV---------REELEDLLIRSDIGVA 61
           +SW  +L +G + T  ++        ++  LD  V          E+LE  LI +D+G A
Sbjct: 1   MSWFDRLRQGLSKTRQQISG------TAGPLDQEVQTAFTRIDNIEDLEYALIAADVGRA 54

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSH-----RPHVIL 115
             ++I+E++      +          +    +       +  F+ D S      + HV++
Sbjct: 55  ATEEIIEDIRKNGEGRLQDALMRALTLQLEPNARRAQFRELGFSPDVSRSKVDPKGHVVM 114

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           V+GVNGVGKTT I KL +   + G  VM AAGDTFR+AA  QL +W +R     +    G
Sbjct: 115 VIGVNGVGKTTTIAKLGQYYMERGQSVMFAAGDTFRAAAGTQLGVWGERLGVPVIQGVDG 174

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D AA+A++A    +A+  D+L +DTAGRLHN   LM  + K+ RV+ + DP  P  V  
Sbjct: 175 GDPAAVAFDAAGARKARGTDLLFVDTAGRLHNKHNLMEELKKVRRVIDKADPGEPAEVWL 234

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDA TGQN L+Q + FH     TG+++TK+DGTA+GG L+PIV    +P+ F+GVGE  
Sbjct: 235 VLDAVTGQNGLQQAKKFHEATPLTGVVVTKLDGTAKGGILVPIVRELGVPIKFIGVGEQP 294

Query: 296 NDLEPFVAKDFSAVIT 311
            DL+PF +++F   + 
Sbjct: 295 GDLQPFDSQEFVRALF 310


>gi|219849764|ref|YP_002464197.1| signal recognition particle-docking protein FtsY [Chloroflexus
           aggregans DSM 9485]
 gi|219544023|gb|ACL25761.1| signal recognition particle-docking protein FtsY [Chloroflexus
           aggregans DSM 9485]
          Length = 330

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 109/296 (36%), Positives = 166/296 (56%), Gaps = 5/296 (1%)

Query: 19  KGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
                +   +   I  + ++   + D + +ELE+ LI++D+G+   Q +V   + +    
Sbjct: 28  ASLEKSRQGIFGRIAKLFANDDPITDQLWDELEEALIQADVGLETTQYLVNRTIDRVNRY 87

Query: 78  DVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            V   R   + +   + +     +     D   +P+VILVVGVNG GKTT+I KL+ +  
Sbjct: 88  GVKKAREAREMLKAEMVRTFAEYAGQQRPDA--KPYVILVVGVNGAGKTTLIAKLAHRYK 145

Query: 137 DA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           +  G KV+LAAGDTFR+AA +QL+ WA+R     V    G+DAAA+ Y+A   A  + VD
Sbjct: 146 NRFGKKVLLAAGDTFRAAATEQLETWAERAGVPCVSLGQGADAAAVVYKAIDAALEQDVD 205

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           +LI+DTAGRLH    LM  + K+  ++ R  P APH  + V+DATTGQN + Q + F   
Sbjct: 206 ILIVDTAGRLHAKYNLMQELEKIRNIIARKLPGAPHETILVIDATTGQNGVLQAKAFLKA 265

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           AG T + +TKMDGTA+GG    I    + P+ ++G GE ++DL  F A+ F   + 
Sbjct: 266 AGVTDVAVTKMDGTAKGGIAFAIAQDIERPIRYIGTGEKLDDLALFDAQTFVDALF 321


>gi|312137225|ref|YP_004004562.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Methanothermus fervidus DSM 2088]
 gi|311224944|gb|ADP77800.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanothermus fervidus DSM 2088]
          Length = 449

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 142/304 (46%), Gaps = 19/304 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 KL++ I  +     +D+     V ++L+  LI++D+ V +  K+ + +  +   
Sbjct: 8   LGKLGEKLRKSIKKLAKMPIVDEKVVKEVIKDLQRALIQADVNVKLVFKLSKSIEKRALK 67

Query: 77  KD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++        + V+  V E + K+L    K +      +P+ IL VG+ G GKTT + KL
Sbjct: 68  EEPPKGITPKEHVIKIVYEELTKLLGK--KSYKLKIDKKPYKILFVGLQGSGKTTTVAKL 125

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G    +   DT+R+AA DQLK   +  +          +   LA E   + + 
Sbjct: 126 AHYLRLKGYNSAVVCTDTWRTAAYDQLKQLTEEINVPMYGDPNEDNPIRLAKEGLNKFK- 184

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV++ DTAGR  N   L+  +  + + +       P  ++ V+D T GQ A  Q + 
Sbjct: 185 -NYDVILFDTAGRHKNEKELLDEMEMLSKEIN------PDEIILVIDGTIGQQAKSQAKA 237

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG+A+GGG +  V     P+ F+G GE I+DLE F    F + + 
Sbjct: 238 FSERVKIGSIIVTKLDGSAKGGGALSAVSEVGAPIKFIGTGEKIDDLEEFDPARFMSRLL 297

Query: 312 GCLD 315
           G  D
Sbjct: 298 GMGD 301


>gi|212696165|ref|ZP_03304293.1| hypothetical protein ANHYDRO_00701 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676794|gb|EEB36401.1| hypothetical protein ANHYDRO_00701 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 367

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 123/307 (40%), Positives = 185/307 (60%), Gaps = 9/307 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           L +  KL+KG   T  +    + ++ ++  ++DD + +ELE++LI +DIG+    +IV+E
Sbjct: 63  LGFFEKLSKGLTKTREQFSSKLKNLFTANVKIDDDLYDELEEILISADIGMQSTIEIVDE 122

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-----FSHRPHVILVVGVNGVGK 124
           L  K   + +     ++    L+ +++       N D      + +  VILV+GVNGVGK
Sbjct: 123 LKDKIKERSIKNADQIFP---LLKEIMEDKLDEKNLDNELLISNDKLSVILVIGVNGVGK 179

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+  +   G KV LAA DTFR+AAI+QL  WA  ++   +  + GSD +A+ ++
Sbjct: 180 TTTIGKLAHNLKKEGHKVTLAAADTFRAAAIEQLDSWAKESNTQMIAHKEGSDPSAVIFD 239

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+A   DVLI DTAGRLHN   LM  + K+ R +     +A    L VLDATTGQN
Sbjct: 240 AIQAAKANGSDVLICDTAGRLHNKKNLMNELEKINRTISTHANNANRENLLVLDATTGQN 299

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q+  F  V   TGLI+TK+DGTA+GG + P+ V  ++PV ++GVGEGI++LE F +K
Sbjct: 300 AISQLREFKNVCEITGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGIDNLEKFDSK 359

Query: 305 DFSAVIT 311
            F   + 
Sbjct: 360 SFVKAMI 366


>gi|5822474|pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
           Aquaticus
 gi|5822475|pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
           Aquaticus
 gi|5822476|pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
           Aquaticus
          Length = 425

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 141/304 (46%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + V +  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V       + +L  V E + + L   ++          ++  +VG+ G GKTT   KL
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEAR---LPVLKDRNLWFLVGLQGSGKTTTAAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL++  ++     +    G    ++     ++A+ 
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL     
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  +  I 
Sbjct: 233 FDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|298244305|ref|ZP_06968111.1| signal recognition particle-docking protein FtsY [Ktedonobacter
           racemifer DSM 44963]
 gi|297551786|gb|EFH85651.1| signal recognition particle-docking protein FtsY [Ktedonobacter
           racemifer DSM 44963]
          Length = 337

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 176/310 (56%), Gaps = 9/310 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            ++ + +   ++ +  + F+  S  ++E  TD+I+     D + ++LE+ L+ +D+G + 
Sbjct: 33  PEQQSPQRFGFLNRTRQLFSRMSEVVEE--TDLIT-----DEMWDDLEESLLAADVGPST 85

Query: 63  AQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              ++E L  +   + +     +   + E +  +L   S P          VILV+GVNG
Sbjct: 86  TIWLIERLRQRAENEHMRTGAQVQRALREELVMLLGDPS-PLRLSQRSPLTVILVIGVNG 144

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT I K++ ++S  G +V+LAA DTFR+AAIDQLK W  R S   +  +  +D  A+
Sbjct: 145 SGKTTSIAKMAHRLSREGRQVILAAADTFRAAAIDQLKEWGQRISVPVISQQPNADPGAV 204

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A + AQ++  DVLI+DTAGRLH    LM  + K+ +V+++  P  PH +L V+DATT
Sbjct: 205 VYDAIQAAQSRGSDVLIVDTAGRLHTKYNLMEELKKINKVIQKFIPDGPHELLIVIDATT 264

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q   F    G TG+I++K+D TA+GG    +     +P+ F+  GE + +L PF
Sbjct: 265 GQNALLQARKFAEDIGLTGVIISKLDSTAKGGFAFAVADDLGVPIKFIATGEKVENLIPF 324

Query: 302 VAKDFSAVIT 311
             + F A + 
Sbjct: 325 DPQSFVAALF 334


>gi|282895592|ref|ZP_06303726.1| Cell division transporter substrate-binding protein FtsY
           [Raphidiopsis brookii D9]
 gi|281199432|gb|EFA74296.1| Cell division transporter substrate-binding protein FtsY
           [Raphidiopsis brookii D9]
          Length = 542

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 102/313 (32%), Positives = 180/313 (57%), Gaps = 5/313 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + ++ E ++W++KL +G   T   +   +  I+    L+     E+E +L+++D+GV   
Sbjct: 229 EDISIEEITWLKKLRQGLDKTRRNILNQLKAIVGQGPLNQDAVAEIEGVLLQADVGVEAT 288

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFS---HRPHVILVVGV 119
             I++ L  K   +    ++ +  + +++  ML  PL       F+    +  + L+ GV
Sbjct: 289 DLIIQSLQKKLRDEVTPPEQAIAYLKQILRDMLEKPLESAPRSGFAPEKDKLTIWLITGV 348

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT IGK++     +G   ++AA DTFR+AA++Q+K+W  R+  + + +    +D 
Sbjct: 349 NGAGKTTTIGKIAHLAQKSGYNCLIAAADTFRAAAVEQVKVWGSRSGVEVIANPGKNTDP 408

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   AQ++K ++L++DTAGRL N   LM  + K+ R++ +    A    L VLD
Sbjct: 409 AAIVFDAIAAAQSRKTELLLVDTAGRLQNKKNLMDELSKIRRIIDKKAADARVESLLVLD 468

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           +T GQN +RQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+G GEGI DL
Sbjct: 469 STLGQNGIRQAEVFSQAAQLSGVVLTKLDGTAKGGVALAVVQQLGLPIRFIGAGEGIEDL 528

Query: 299 EPFVAKDFSAVIT 311
            PF + +F   + 
Sbjct: 529 RPFSSYEFVEALL 541


>gi|315640110|ref|ZP_07895232.1| cell division protein FtsY [Enterococcus italicus DSM 15952]
 gi|315484087|gb|EFU74561.1| cell division protein FtsY [Enterococcus italicus DSM 15952]
          Length = 334

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 120/298 (40%), Positives = 177/298 (59%), Gaps = 5/298 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     E + ++ ++ R +D+   EELE+ LI +D+G   A +I E L  +
Sbjct: 26  EKYDKGLEKTRKTFGERMNELFANFRTVDEDFFEELEETLIGADVGFDTAIRISESLRQE 85

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKTTVIG 129
              ++      +    + +L++          N          V+L VGVNGVGKTT IG
Sbjct: 86  VKLRNAKKPAEVQNAIIEKLVNLYEEEGMDEVNELAIQPDGLTVMLFVGVNGVGKTTSIG 145

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ ++   G K+MLAA DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A
Sbjct: 146 KLAHQLKQEGKKIMLAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAMRRA 205

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + ++VDVL+IDTAGRL N   LM  + K+ R+++R +P APH VL VLDATTGQNA+ Q 
Sbjct: 206 KEEQVDVLLIDTAGRLQNKVNLMNELEKIQRIIQREEPTAPHEVLLVLDATTGQNAMVQA 265

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL+++K+DGTA+GG ++ I     +PV  +G+GEGI+DLEPF   +F 
Sbjct: 266 KQFKETTNVTGLVLSKLDGTAKGGIVLAIRNELHLPVKLVGLGEGIDDLEPFNPNEFV 323


>gi|300309714|ref|YP_003773806.1| signal recognition particle subunit SRP54 protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072499|gb|ADJ61898.1| signal recognition particle subunit SRP54 protein [Herbaspirillum
           seropedicae SmR1]
          Length = 456

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 142/308 (46%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L + +  +    RL +     +  E+   L+ +D+ +   ++ + ++  K   
Sbjct: 2   LDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V   +  ++     P     +     P +IL+ G+ G GKTT +
Sbjct: 62  EEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K +      KV+  + D +R AAI QL+    +  ADF  S+       +A  A  
Sbjct: 122 GKLAKYLRETTKKKVLTVSADVYRPAAIGQLETVTGQAGADFFPSQATDKPVDIALAALD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    +VLI+DTAGRL  +  +M  I  +   +K      P   L V+DA  GQ+A+ 
Sbjct: 182 YAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIK------PIETLFVVDAMLGQDAIN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F      TG+++TK+DG +RGG  + +      P+ F GV E ++ LE F     +
Sbjct: 236 TAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|99082443|ref|YP_614597.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ruegeria sp.
           TM1040]
 gi|99038723|gb|ABF65335.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ruegeria sp.
           TM1040]
          Length = 514

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  V+++  +   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSEDDVKTALREVRVALLEADVSLPVARDFVKKVQEQATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + + + L     P      + P  IL+VG+ G GKTT  GKL
Sbjct: 62  QAVTKSVTPGQQVVKIVHDALVETLRGDEDPGALKIDNPPAPILMVGLQGSGKTTTTGKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G KV+LA+ D +R AA+DQL +   +   D +    G     +A  A +QA 
Sbjct: 122 AKRLKEKEGKKVLLASLDVYRPAAMDQLAVLGTQIGVDTLPIVKGQSPVDIAKRAKQQAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  +  L      M  V    D  +P   L V+D  TGQ A+   E
Sbjct: 182 LGGYDVYMLDTAGRLQIDETL------MKEVEDVRDVVSPRETLLVVDGLTGQVAVEVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F     +  I
Sbjct: 236 EFDNKIGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDAIETFEPDRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|312143706|ref|YP_003995152.1| signal recognition particle-docking protein FtsY [Halanaerobium sp.
           'sapolanicus']
 gi|311904357|gb|ADQ14798.1| signal recognition particle-docking protein FtsY [Halanaerobium sp.
           'sapolanicus']
          Length = 307

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 123/309 (39%), Positives = 186/309 (60%), Gaps = 6/309 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S++ +L  G   T       +++I + R  +DD + EELE++LI++D+GV     ++E+
Sbjct: 1   MSFLERLKDGLKKTKEGFVNKVSNIFTGRTNIDDELFEELEEVLIQADVGVKTTFALIEK 60

Query: 70  LLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      +D+     L       +  ML      FN+D     ++I+VVGVNG GKTT I
Sbjct: 61  LKEDIKEEDIKEPEELMKYFQAELKAMLQNEEGTFNFDKDL--NIIMVVGVNGAGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            K++ +  D G KVMLAAGDTFR+ AI+QL+IW DR   + +  + GSDAAA+AY+A + 
Sbjct: 119 AKVAGRYKDQGKKVMLAAGDTFRAGAIEQLQIWGDRLGVNVIAQKEGSDAAAVAYDAVQS 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD--PHAPHSVLQVLDATTGQNAL 246
           A+A+ VD+LI+DTAGRLH    LM  + K+ RV+ R     +A   VL VLDATTGQNA+
Sbjct: 179 AKARDVDLLIVDTAGRLHTQKNLMEELKKVKRVIDREAESANAQVEVLLVLDATTGQNAI 238

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F+      G+ +TK+DGTA+GG +I +    +IP+  +GVGE   DL+ F  ++F
Sbjct: 239 SQAKLFNEAVDVDGIALTKLDGTAKGGIVIAVKNELQIPIKLIGVGEAAEDLQNFDPEEF 298

Query: 307 SAVITGCLD 315
              +    +
Sbjct: 299 IEALFSNGE 307


>gi|309791904|ref|ZP_07686387.1| signal recognition particle-docking protein FtsY [Oscillochloris
           trichoides DG6]
 gi|308226076|gb|EFO79821.1| signal recognition particle-docking protein FtsY [Oscillochloris
           trichoides DG6]
          Length = 322

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 106/297 (35%), Positives = 163/297 (54%), Gaps = 5/297 (1%)

Query: 18  TKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           ++    +   +   I+ + ++   + D + +ELE+ LI+ D+G+     +V     +   
Sbjct: 27  SQSLEKSRQGIFGHISKLFANDDPITDELWDELEESLIQGDVGLETTLYLVNRTKDRVNR 86

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 R + D +   + +     +     +   RP++ILVVGVNG GKTT+I KL+ + 
Sbjct: 87  HGTKKAREVRDMLKAEMVRTFQEFAGQKTINA--RPYIILVVGVNGAGKTTLIAKLAHRY 144

Query: 136 SDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G KV+LAAGDTFR+AA +QL+ WA R     V    G+D+AA+ Y+    A  + V
Sbjct: 145 KHRFGKKVLLAAGDTFRAAATEQLETWAARADVPCVSMGQGADSAAVVYKGLDAALEQNV 204

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DVLIIDTAGRL     LM  + K+  +++R  P APH VL V+DATTGQN + Q + F  
Sbjct: 205 DVLIIDTAGRLQAKYNLMKELEKIRNIIQRKIPDAPHEVLLVIDATTGQNGVLQAKAFLQ 264

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            AG T + +TK+DGTA+GG    I    + P+ ++G GE + DL  F ++ F   + 
Sbjct: 265 SAGVTDVAVTKLDGTAKGGIAFAISQDIERPIRYIGTGEKMEDLAMFDSQSFVDALF 321


>gi|332666732|ref|YP_004449520.1| signal recognition particle-docking protein FtsY [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335546|gb|AEE52647.1| signal recognition particle-docking protein FtsY [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 345

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 123/317 (38%), Positives = 181/317 (57%), Gaps = 15/317 (4%)

Query: 10  SLSWIRK---------LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIG 59
           ++S+            L KG   T       ++ +++ R  +D+ V +ELE LLI +D+G
Sbjct: 27  TMSFFSNIFGKKEKEDLDKGLEKTKSSFFNNLSKMVAGRSTVDEEVLDELEALLISADVG 86

Query: 60  VAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVI 114
            A + +I+E +  +    K + +  + + + + I ++L   +      +      +P V+
Sbjct: 87  RATSTEIIERIEARVAKDKYLGISELNFILRDEIVQLLAENNTQDLAGYELPTGIKPFVL 146

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           LVVGVNGVGKTT IGKL+ +    G KV+L AGDTFR+AA+DQLKIW++R   DF    +
Sbjct: 147 LVVGVNGVGKTTTIGKLAHQFKKQGKKVVLGAGDTFRAAAVDQLKIWSERVGCDFYSKGM 206

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            +D AA+AYE    A     D+ IIDTAGRLH  + LM  +GK+ R + +    APH VL
Sbjct: 207 NTDPAAVAYETVNYAIQNDCDIAIIDTAGRLHTKTGLMQELGKIKRSISKKIETAPHEVL 266

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQNA+ Q + F        L +TK+DGTA+GG  I I    KIP+ ++GVGE 
Sbjct: 267 LVLDATTGQNAIEQAKHFTEATDVNALALTKLDGTAKGGVAIGISNQFKIPIKYIGVGEA 326

Query: 295 INDLEPFVAKDFSAVIT 311
           I+ L+PF  + F   + 
Sbjct: 327 IDQLQPFDKQTFVNALF 343


>gi|325955366|ref|YP_004239026.1| signal recognition particle protein [Weeksella virosa DSM 16922]
 gi|323437984|gb|ADX68448.1| signal recognition particle protein [Weeksella virosa DSM 16922]
          Length = 458

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 143/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL + +  +    ++ +       +E+   L+ +D+   VA++  + +      
Sbjct: 2   FQNLQDKLDKALHTLKGKGQITEINVAETVKEVRRALVDADVSYKVAKEFTDTVRKNAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + + K++           +  P +IL+ G+ G GKTT  GKL
Sbjct: 62  ENVLTSLNPSQLMVKIVHDELVKLMGGEHSELTISAN--PTIILIAGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      K +L AGD +R AAI+QLK+  ++   +    E   +   +A +A   A+
Sbjct: 120 ANYLKTKKNKKPLLVAGDVYRPAAINQLKVLGEQIGVEVYAEEENKNPVEIAEKAIAYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRL  +  +M     + RV    +P      L V+D+ TGQ+A+    
Sbjct: 180 QNGNNVIILDTAGRLAVDQEMMDE---IRRVHAATNPT---ETLFVVDSMTGQDAVNTAR 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V   +G+++TK+DG  RGG  + I      P+ F+  GE +  L+ F     +  I
Sbjct: 234 AFNDVLDYSGVVLTKLDGDTRGGAALTIKTVVDKPIKFISTGEKMEALDLFYPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|219558941|ref|ZP_03538017.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           T17]
          Length = 341

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 135/285 (47%), Gaps = 19/285 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           +    E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 9   EATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILG 68

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P V+++ G+ G GKTT+ GKL+ ++   G   +L A D  R AA++Q
Sbjct: 69  GETRELAF-AKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQ 127

Query: 158 LKIWADRTSADFVCSEI-------GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           L++  +R                   D  A+A     +A+AK  DV+I+DTAGRL  +  
Sbjct: 128 LQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRLGIDEE 187

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LMA    +   +       P  VL VLDA  GQ+A+     F    G TG+ +TK+DG A
Sbjct: 188 LMAQAAAIRDAIN------PDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDA 241

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + +     +P+ F   GE + D + F     ++ I G  D
Sbjct: 242 RGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGD 286


>gi|218295520|ref|ZP_03496333.1| signal recognition particle protein [Thermus aquaticus Y51MC23]
 gi|3024639|sp|O07347|SRP54_THEAQ RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|2149137|gb|AAB58502.1| Ffh [Thermus aquaticus]
 gi|218244152|gb|EED10678.1| signal recognition particle protein [Thermus aquaticus Y51MC23]
          Length = 430

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 142/304 (46%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + VA+  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V       + +L  V E + + L   ++          ++  +VG+ G GKTT   KL
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEAR---LPVLKDRNLWFLVGLQGSGKTTTAAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL++  ++     +    G    ++     ++A+ 
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL     
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  +  I 
Sbjct: 233 FDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|299133089|ref|ZP_07026284.1| signal recognition particle protein [Afipia sp. 1NLS2]
 gi|298593226|gb|EFI53426.1| signal recognition particle protein [Afipia sp. 1NLS2]
          Length = 510

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 138/305 (45%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL   +  +     L +   +    E+   L+ +D+ + V +   +++  +   
Sbjct: 2   FDNLSEKLGGILDKLTRRGALSEADVDAAMREVRRALLEADVALDVVRSFTDKVREQAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + + + L    +  + + +  P  I++VG+ G GKTT   KL
Sbjct: 62  ATVVKSVTPGQMVVKIVHDQLVETLGSDGQTIDLN-APAPIAIMMVGLQGSGKTTTTAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++      KV++A+ D +R AA +QL +     S + +    G     +A  A + A+
Sbjct: 121 ARRLTQRDKKKVLMASLDVYRPAAQEQLAVLGRDLSIETLPVVAGQMPPQIAQRALQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++++DTAGR   +  +M     +           PH VL V D+ TGQ+A+    
Sbjct: 181 LGGYDIVLLDTAGRTTLDEEMMREAATVKTAAN------PHEVLLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE  + LE F     +  I
Sbjct: 235 AFDERVGLTGIVLTRVDGDGRGGAALSMRAVTGKPIKLIGTGEKTDALEDFHPSRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|124268406|ref|YP_001022410.1| signal recognition particle-docking protein FtsY [Methylibium
           petroleiphilum PM1]
 gi|124261181|gb|ABM96175.1| signal recognition particle-docking protein FtsY [Methylibium
           petroleiphilum PM1]
          Length = 350

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 128/311 (41%), Positives = 187/311 (60%), Gaps = 14/311 (4%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           +   W+ +L  G   T      GIT + +  R+D+ + EELE  L+ +D G+   Q ++ 
Sbjct: 45  QRRPWLDRLKSGLRRT----GSGITQVFTGTRIDEALYEELEAALLMADAGMPATQHLLA 100

Query: 69  ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +L  +      +    +  +  + + ++L PL +P       RP VI+V GVNG GKTT 
Sbjct: 101 DLKRRVKEHKATDPAAVKLLLVDALAELLAPLQRPLVLG-ETRPTVIMVAGVNGAGKTTS 159

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL++ ++D GLKV+LAA DTFR+AA +QL +WADR   + V S+ G D AA++++A K
Sbjct: 160 IGKLTRHLADGGLKVLLAAADTFRAAAKEQLAVWADRNRVEIV-SQEGGDPAAVSFDAVK 218

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             QA+  DV++ DTAGRL   + LM  + K+ R + +    APH VL V+D  TGQNAL 
Sbjct: 219 AGQARGCDVVVADTAGRLPTQAHLMEELRKIKRTIGKAMDGAPHEVLLVVDGNTGQNALA 278

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV-------THKIPVYFLGVGEGINDLEP 300
           QV+ F AV G TGL++TK+DGTA+GG L  I +          +PVYF+GVGE + DLE 
Sbjct: 279 QVKAFDAVLGLTGLVVTKLDGTAKGGVLAAIALWSRERDGASPVPVYFIGVGEKLADLET 338

Query: 301 FVAKDFSAVIT 311
           F A++FS  + 
Sbjct: 339 FDAREFSQALL 349


>gi|326435414|gb|EGD80984.1| signal recognition particle protein [Salpingoeca sp. ATCC 50818]
          Length = 523

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKR-- 74
                 K+K  + ++ S+  +D+ V +EL       LI SD+ V +  K+   +      
Sbjct: 3   LGDLGRKIKGALWNMTSATVIDEEVFDELVKDICRALIESDVQVGLVSKLRNNIKAAVQF 62

Query: 75  --YAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                 V+ +R +   V   + K++ P   P+     ++P+VI+ VG+ G GKTT   KL
Sbjct: 63  DDSGAGVNRRRQIQRAVFTELCKLVDPGVTPWKPK-KNQPNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A +  ++ + 
Sbjct: 122 AYHYQRRGWKACLVCADTFRAGAFDQLKQNATKARIPFYGSYTEIDPVVIAADGVEKFKQ 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L      M++V   +DP    +++ V+DAT GQ    Q + 
Sbjct: 182 QGFEIIIVDTSGRHKQEDSLFEE---MLQVSNAVDP---DNIIFVMDATIGQACQGQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ ++G GE I+DLEPF  K F + + 
Sbjct: 236 FKDKVDVGAVIVTKLDGHAKGGGALSAVAATKSPIVYIGTGEHIDDLEPFQTKSFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|312793351|ref|YP_004026274.1| signal recognition particle-docking protein ftsy
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180491|gb|ADQ40661.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 301

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 124/302 (41%), Positives = 188/302 (62%), Gaps = 4/302 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     E +  ++ S +++DD + EELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFFDRLKEGLSKTKKNFTEKVESLLKSFKQVDDELFEELEEVLVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  K   + +S       V EL+ + ++ +    N      P +IL+VGVNGVGKTT IG
Sbjct: 61  LKEKVKKEKISATE---AVKELLKEEMLSIINLENKLSEKYPLIILMVGVNGVGKTTSIG 117

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++  +   G KV++AA DTFR+AA +QL+IWA R   D +    GSD AA+ ++  +  
Sbjct: 118 KIANLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGSDPAAVVFDGIQAM 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQNAL Q 
Sbjct: 178 RARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEASKETLLVIDATTGQNALNQA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     +G+++TK+DGTA+GG +I I    +IPV F+GVGE I+DL+ F AK+F   
Sbjct: 238 KEFNQAVNISGIVLTKLDGTAKGGIIISICDELRIPVKFVGVGEKIDDLQYFNAKEFVDA 297

Query: 310 IT 311
           + 
Sbjct: 298 LF 299


>gi|126732663|ref|ZP_01748459.1| signal recognition particle protein [Sagittula stellata E-37]
 gi|126706793|gb|EBA05863.1| signal recognition particle protein [Sagittula stellata E-37]
          Length = 503

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA++ V+ +  K   
Sbjct: 2   FENLSERLGGVFDRLTKQGALSEDDVKTALREVRVALLEADVSLPVARQFVKAVEKKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V+      Q+V+  V + +  +L    +P      + P  IL+VG+ G GKTT   KL
Sbjct: 62  AAVTKSVTPGQQVVKIVHDELIAVLSGEGEPGKLKIDNPPAPILMVGLQGGGKTTTTAKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G KV++A+ D  R AA++QL I   +   D +    G D  A+A  A  QA 
Sbjct: 122 AKRLKERDGKKVLMASLDVNRPAAMEQLAILGTQIGVDTLPIVKGEDPVAIAKRAKTQAG 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  +  L      M +V    D   P   L V+D  TGQ+A+   E
Sbjct: 182 LGGYDVYLLDTAGRLSIDEEL------MRQVEAVRDVANPRETLLVVDGLTGQDAVHTAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F     +  I
Sbjct: 236 NFDTRVGITGVVLTRMDGDGRGGAALSMRAITGKPIKFVGLGEKMDALETFEPDRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|148269493|ref|YP_001243953.1| signal recognition particle-docking protein FtsY [Thermotoga
           petrophila RKU-1]
 gi|147735037|gb|ABQ46377.1| signal recognition particle-docking protein FtsY [Thermotoga
           petrophila RKU-1]
          Length = 294

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 130/301 (43%), Positives = 174/301 (57%), Gaps = 9/301 (2%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +     L KG   T       +  ++  ++LDD  REELE+LLI++D+GV   + I+E L
Sbjct: 1   MGLFDFLKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYILERL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K           L  + E+I ++L       N      P VI VVGVNG GKTT  GK
Sbjct: 61  KEK-------DGDALESLKEIILEIL-NFDTKLNVP-PEPPFVITVVGVNGTGKTTSCGK 111

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K   D G  V+LAA DTFR+AAI+QLKIW +R  A  +    G+D AA+A++A   A 
Sbjct: 112 LAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHAL 171

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DV+IIDTAGRLH    LM  + K+ RV+K+  P APH  L V+DATTGQN L Q +
Sbjct: 172 ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAK 231

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F      TG+I+TK+DGTA+GG  + I     IP+ F+GVGE   DL PF  + F  V+
Sbjct: 232 IFKEAVDVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVL 291

Query: 311 T 311
            
Sbjct: 292 I 292


>gi|326771786|ref|ZP_08231071.1| signal recognition particle protein [Actinomyces viscosus C505]
 gi|326637919|gb|EGE38820.1| signal recognition particle protein [Actinomyces viscosus C505]
          Length = 561

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S ++      +    RL +        E+   L+ +D+ + V +     +  K   
Sbjct: 2   FGNLSDRITASFNQLRGKGRLTEADVNATVTEIRRALLEADVALPVVRAFTAAVREKAVD 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              S      Q+V+  V+E + ++L   ++  +W     P +I++ G+ G GKTT+ GKL
Sbjct: 62  AARSQALNPGQQVVKIVNEELIEVLGGQTREIHW-ADRGPTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            + + D G +V+L A D  R  A+ QL + A+R        E G+   D  A+A    + 
Sbjct: 121 GRWLRDQGKRVLLVASDLQRPNAVTQLSVVAERAGVHVWAPEPGNGVGDPVAVARSGVEH 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DV+++DTAGRL  ++ +M         ++  D  +PH +L VLDA  GQ+A+  
Sbjct: 181 ARTNGYDVVVVDTAGRLGVDAEMMDQ------AIRIRDAVSPHEILFVLDAMVGQDAVNT 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G TG++++K+DG ARGG  + +      PV F   GEG+ D E F A   ++
Sbjct: 235 SVAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGAPVLFSSTGEGLTDFERFHADRMAS 294

Query: 309 VITGCLDY 316
            I    D 
Sbjct: 295 RILDMGDL 302


>gi|86159726|ref|YP_466511.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776237|gb|ABC83074.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 550

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 91/317 (28%), Positives = 150/317 (47%), Gaps = 24/317 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            +  ++KGF +   KLK      I+   +DD +R+ +   L+ +D+   V ++ V  +  
Sbjct: 1   MLETVSKGFKAARNKLKG--RTEITPEVVDDALRD-IRVSLLEADVSFDVVKRFVARVRE 57

Query: 73  KRYAKDVSVQ--------------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           K   + V  +                +    + +  ++ P+          RP  I++VG
Sbjct: 58  KAIGEVVETKIKTEKGQLRVTPQDHFVKICHDELEALMGPVDTSLRQGERGRPTGIMMVG 117

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT  GK++ ++   G +VML A D +R AA+DQLK+  +R        E G   
Sbjct: 118 LQGSGKTTTAGKIANRLLKDGKQVMLVAADVYRPAAVDQLKVLGERLGVPVF-HEPGVSP 176

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +   AF+ AQ +  + +I DTAGRL  +  LM  +  +   +      AP ++L V D
Sbjct: 177 PDMCRHAFEAAQREHRNAVIYDTAGRLAIDDELMTELENIKANV------APENILLVAD 230

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A++    F       G I+TK+DG ARGG  + I      P+ FLG+GE ++ L
Sbjct: 231 AMIGQDAVKTASEFDRRLAIDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGEALDRL 290

Query: 299 EPFVAKDFSAVITGCLD 315
           E F  +  ++ I G  D
Sbjct: 291 EEFRPEGLASRILGFGD 307


>gi|89069747|ref|ZP_01157083.1| signal recognition particle protein [Oceanicola granulosus
           HTCC2516]
 gi|89044693|gb|EAR50804.1| signal recognition particle protein [Oceanicola granulosus
           HTCC2516]
          Length = 498

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L  + V+  L +    L+ +D+ + VA++ ++ +  +   
Sbjct: 2   FENLSDRLSGVFDRLTKQGALSAEDVKTALREVRVALLEADVSLPVAREFIKAVEKQATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V+      Q+V+  V + +  +L     P      + P  IL+VG+ G GKTT   KL
Sbjct: 62  AAVTKSVTPGQQVIKIVHDELIGVLQGEGDPGKLKIDNPPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++    G +V++A+ D  R AA++QL I   +   D +    G D  A+A  A  QA 
Sbjct: 122 AKRLKDREGKRVLMASLDVNRPAAMEQLAILGQQIGVDTLPIVKGEDPVAIARRAKTQAS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH +  L+A    +       D   P   L V+D  TGQ+A+   E
Sbjct: 182 LGGYDVYMLDTAGRLHIDHELIAQAAAV------RDVANPRETLLVVDGLTGQDAVNVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F A+  +  I
Sbjct: 236 EFDDKIGVSGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGERMDAIEEFHAERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|260574838|ref|ZP_05842840.1| signal recognition particle protein [Rhodobacter sp. SW2]
 gi|259022843|gb|EEW26137.1| signal recognition particle protein [Rhodobacter sp. SW2]
          Length = 497

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L D        E+   L+ +D+ + VA+  V  +  K   
Sbjct: 2   FENLSERLGSVFERLTKQGALSDADVATALREVRVALLEADVSLPVARDFVAAVQAKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + + ++L            + P  +L+VG+ G GKTT   KL
Sbjct: 62  QSVTKSVTPGQQVVKIVHDELIRVLAGDGPADALKIDNPPACVLMVGLQGSGKTTTTAKL 121

Query: 132 SKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ D  G +V+LA+ DT R AA++QL+I A +   D +    G  A  +A  A  QA 
Sbjct: 122 AKRLHDKQGKRVLLASLDTNRPAAMEQLQILAAQVGVDSLPIVKGESATQIAKRAKAQAT 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL +DTAGRLH +  LMA +  +       D   P   L V+D  TGQ+A+    
Sbjct: 182 MGGYDVLFLDTAGRLHIDEALMAEVQAV------RDIAQPRETLLVVDGLTGQDAVNVAT 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F     +  I
Sbjct: 236 EFDGKVGITGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGMGEKMDALETFEPDRVAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|325846665|ref|ZP_08169580.1| signal recognition particle-docking protein FtsY [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481423|gb|EGC84464.1| signal recognition particle-docking protein FtsY [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 368

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 187/313 (59%), Gaps = 9/313 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVA 63
           +   E L +  KL+KG   T  +    + ++ ++  ++DD + +ELE++LI +DIG+   
Sbjct: 58  EEDKEELGFFEKLSKGLTKTREQFSSKLKNLFTANVKIDDDLYDELEEILISADIGMQST 117

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-----FSHRPHVILVVG 118
            +IV+EL  K   + +     ++    L+ +++       N D      + +  VILV+G
Sbjct: 118 IEIVDELKDKIKERSIKNADQIFP---LLKEIMEDKLDEKNLDNELLISNDKLSVILVIG 174

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+  +   G KV LAA DTFR+AAI+QL  WA  ++   +  + GSD 
Sbjct: 175 VNGVGKTTTIGKLAHNLKKEGHKVTLAAADTFRAAAIEQLDSWAKESNTQMIAHKEGSDP 234

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           +A+ ++A + A+A   DVLI DTAGRLHN   LM  + K+ R +     +A    L VLD
Sbjct: 235 SAVIFDAIQAAKANGSDVLICDTAGRLHNKKNLMNELEKINRTISTHANNANRENLLVLD 294

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ Q+  F  V   TGLI+TK+DGTA+GG + P+ V  ++PV ++GVGEGI++L
Sbjct: 295 ATTGQNAISQLREFKNVCDITGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGIDNL 354

Query: 299 EPFVAKDFSAVIT 311
           E F +K F   + 
Sbjct: 355 EKFDSKSFVKAMI 367


>gi|283455254|ref|YP_003359818.1| signal recognition particle, subunit FFH/SRP54 [Bifidobacterium
           dentium Bd1]
 gi|283101888|gb|ADB08994.1| ffh Signal recognition particle, subunit FFH/SRP54 [Bifidobacterium
           dentium Bd1]
          Length = 541

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 143/317 (45%), Gaps = 33/317 (10%)

Query: 25  SLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           + +L      + S  +L     DG   E+   L+ +D+ + V +     +  +    +VS
Sbjct: 2   TDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGRIRERALGTEVS 61

Query: 81  -----VQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                 Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GKL   
Sbjct: 62  QALNPAQQVVKIVNEELTDVLGAGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGKLGYW 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE----------------IGSDA 178
           + D+G   +L A D  R  A+ QL++  +R        E                   D 
Sbjct: 121 LKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSAGGEAVASPGLTTGDP 180

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A ++   A+ K  D +IIDTAGRL  +  LM     +       D   P+ +L V+D
Sbjct: 181 VKVARDSVAFARQKLYDTVIIDTAGRLGVDEELMRQARDI------RDAVQPNEILFVID 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG+ D 
Sbjct: 235 AMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEGLKDF 294

Query: 299 EPFVAKDFSAVITGCLD 315
           E F     ++ I    D
Sbjct: 295 EVFHPDRMASRILDMGD 311


>gi|269215482|ref|ZP_06159336.1| signal recognition particle-docking protein FtsY [Slackia exigua
           ATCC 700122]
 gi|269130969|gb|EEZ62044.1| signal recognition particle-docking protein FtsY [Slackia exigua
           ATCC 700122]
          Length = 304

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 172/308 (55%), Gaps = 13/308 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           ++W  ++  G + +  KL+E I  +      +D+   E LE+ L+ SDIG   A KI  +
Sbjct: 1   MAWFDRMKSGLSKSREKLQESINMLVFKGPEVDEDFWENLEETLVMSDIGYPAAFKISVD 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-----FSHRPHVILVVGVNGVGK 124
           +       D + +R L D   ++ ++   +++ F           RP  +L+VGVNG GK
Sbjct: 61  MR------DAAQRRALPDAPAILEELSAQIARGFAVPEEGNPLDERPLCVLLVGVNGSGK 114

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GK++ +    G  V+L A DTFR+AAI+QL+ WA R+    V  E GSD A++ YE
Sbjct: 115 TTTAGKMAAEAKGRGDTVVLGAADTFRAAAIEQLEEWARRSDVPIVERERGSDPASVCYE 174

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              +A+    D+ +IDTAGRLH +  LM  + K+  V+++       +VL V+DAT GQN
Sbjct: 175 TLDEAERIGADLALIDTAGRLHTSPDLMRELQKVTSVVRKRCAWRVVTVL-VIDATAGQN 233

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q + F       G++MTK+DGTA+GG  + I     +P+  +GVGEGI+DL  F A 
Sbjct: 234 GLTQAKRFDEALDLDGIVMTKLDGTAKGGIALAISYELGLPILKIGVGEGIDDLRDFDAL 293

Query: 305 DFSAVITG 312
           D++  +TG
Sbjct: 294 DYARALTG 301


>gi|254466450|ref|ZP_05079861.1| signal recognition particle protein [Rhodobacterales bacterium Y4I]
 gi|206687358|gb|EDZ47840.1| signal recognition particle protein [Rhodobacterales bacterium Y4I]
          Length = 505

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 151/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L++        E+   L+ +D+ + VA+  V+++  +   
Sbjct: 2   FENLSERLSGVFDRLTKQGALNEEDVKSALREVRVALLEADVSLPVARDFVKKVQEQATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L     P      + P  +L+VG+ G GKTT  GKL
Sbjct: 62  QAVTKSVTPGQQVVKIVHDALVDVLRGDEDPGKLKVDNPPAPVLMVGLQGSGKTTTTGKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G KV++A+ D +R AA+DQL +   +   D +    G     +A  A +QA 
Sbjct: 122 AKRLKEKEGKKVLMASLDVYRPAAMDQLAVLGMQIGVDTLPIVPGQKPVDIAKRAKQQAT 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH +  LM  +  +  V+       P   L V+D  TGQ A+   E
Sbjct: 182 LGGYDVYMLDTAGRLHIDETLMQEVEDVRNVVS------PRETLLVVDGLTGQVAVEVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A  G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F A   +  I
Sbjct: 236 EFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEADRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040388|gb|ACT57184.1| signal recognition particle protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 461

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 138/305 (45%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L     +I     L +        E+    + +D+ + V Q   + +  K   
Sbjct: 2   FDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + +       Q V+  V + + ++L   S   + + +  P VI++VG+ G GKTT   K+
Sbjct: 62  EKILRSIQPGQMVIKIVHDELVEVLGKESIELDLN-APSPLVIMLVGLQGSGKTTTTAKI 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K + +A+ D  R AA +QL+   ++   D +          +A  A + A+
Sbjct: 121 AYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D +I+DTAGR H N  LM  I ++  +        PH +L V DA TGQ+A+    
Sbjct: 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTN------PHEILLVADALTGQDAVHLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F  +   TG+I+T+MDG  RGG  + +      P+  +G GE INDLE F     +  I
Sbjct: 235 NFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|332024403|gb|EGI64601.1| Signal recognition particle 54 kDa protein [Acromyrmex echinatior]
          Length = 506

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +K+ E +      
Sbjct: 3   LADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIRLVKKLRENVRKVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  K +      RP++I+ VG+ G GKTT   KL
Sbjct: 63  DDMAGGINKRRMIQSAVFKELVKLIDPGVKAYQ-PVKGRPNIIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +     + 
Sbjct: 122 AYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVTIAQDGVDMFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L+  +   P +++ V+DAT GQ    Q + 
Sbjct: 182 EGYEIIIVDTSGRHKQEESLFEEM------LQVANAVQPDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + PV F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFVGTGEHIDDLEPFKTKPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|187930124|ref|YP_001900611.1| signal recognition particle protein [Ralstonia pickettii 12J]
 gi|187727014|gb|ACD28179.1| signal recognition particle protein [Ralstonia pickettii 12J]
          Length = 471

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 147/319 (46%), Gaps = 31/319 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   LDNLTQRLARVVKTMRGEARLTEANTAEMLREVRMALLEADVALPVVREFIARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIH--------------KMLMPLSKPFNWDFSHRPHVILVV 117
           +DV       Q ++  V   +                ++   +   N + +  P +IL+ 
Sbjct: 62  EDVITSLSPGQALVGIVQRELTAIIGGQEALEGVGSNIMGGRAAELNLNVT-PPAIILMA 120

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           G+ G GKTT +GKL+K + +   K +   + D +R AAI QLK  +++  ADF  S+   
Sbjct: 121 GLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFPSQPDQ 180

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
               +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK          L V
Sbjct: 181 KPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHAKLKPA------ETLFV 234

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+GV E ++
Sbjct: 235 VDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGKPIKFVGVAEKLD 294

Query: 297 DLEPFVAKDFSAVITGCLD 315
            LEPF     +  I G  D
Sbjct: 295 GLEPFYPDRMAQRILGMGD 313


>gi|329766980|ref|ZP_08258508.1| signal recognition particle protein [Gemella haemolysans M341]
 gi|328837705|gb|EGF87330.1| signal recognition particle protein [Gemella haemolysans M341]
          Length = 450

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 144/306 (47%), Gaps = 20/306 (6%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L+  I  +    ++ +     +  E+   L+ +D+   V ++ V+++  +  
Sbjct: 2   AFENLSQRLQNTIAKLTGKGKVSEADVKEMMREVRLALLEADVNFKVVKEFVKKISERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E + ++L   +   N     +   +++VG+ G GKTT  GK
Sbjct: 62  GTEVMKSLTPAQQIVKIVNEELVELLGGSNVELNQG--GKITTVMMVGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+     K  +L A D +R AA+ QLK    +   +     +  D   +  +    A
Sbjct: 120 LALKVKKTMKKKPLLIAADVYRPAAVQQLKTLGKQLDIEVF--YVDKDPVDIVKDGLAFA 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    + +IIDTAGRLH + +LM  +  +           P  +L V+DA  GQ A+   
Sbjct: 178 KENYFNYVIIDTAGRLHIDELLMDELKDIKAATT------PDEILLVIDAMIGQEAVNIA 231

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F      TGL++TK+DG  RGG  + I      P+  +G+GE +NDLE F  +  ++ 
Sbjct: 232 SSFDEQLDITGLVLTKLDGDTRGGAALSIKSITGKPIKLVGMGEKMNDLEIFHPERMASR 291

Query: 310 ITGCLD 315
           I G  D
Sbjct: 292 ILGMGD 297


>gi|281419892|ref|ZP_06250891.1| signal recognition particle-docking protein FtsY [Prevotella copri
           DSM 18205]
 gi|281406019|gb|EFB36699.1| signal recognition particle-docking protein FtsY [Prevotella copri
           DSM 18205]
          Length = 317

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 121/301 (40%), Positives = 180/301 (59%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T   +   +   ++ +  +DD V ++LE++LI SD+GV    KI+  +  +  
Sbjct: 15  LDKGLEKTKESVFGKLARAVAGKSTVDDDVLDDLEEVLITSDVGVETTVKIIRRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   + E I  +L          +     H+P+VILVVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTSELNRILREEIAILLSENHSDDLADWELPADHKPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV+L A DTFR+AA++Q+ IW +R     V  ++GSD A++A++  + A+
Sbjct: 135 LAYQFKKAGKKVVLGAADTFRAAAVEQICIWGERVGVPVVKQQMGSDPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  V+ VLD +TGQNA  Q +
Sbjct: 195 ANGADVVLIDTAGRLHNKVNLMNELKKIKEVMKKVMPEAPDEVMLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   + L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F   +F   +
Sbjct: 255 QFSAVTNISSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFNKTEFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|313890272|ref|ZP_07823906.1| signal recognition particle-docking protein FtsY [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121377|gb|EFR44482.1| signal recognition particle-docking protein FtsY [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 494

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 118/301 (39%), Positives = 175/301 (58%), Gaps = 3/301 (0%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   EELE++LI SD+GV VA  + ++L  +
Sbjct: 191 EKYDRSLKKTRSGFASRLNAFFANFRRVDEEFFEELEEMLILSDVGVTVATTLTDQLRQE 250

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++     VL    + +L+           N ++ ++  V+L VGVNGVGKTT IGKL
Sbjct: 251 AKLENAKKPEVLRRVIIEKLVAIYEKDGIYGENINYQNKLTVMLFVGVNGVGKTTSIGKL 310

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 311 AYRYKSEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGSEKADPASVVFDGVEKAVA 370

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 371 QEVDILLIDTAGRLQNKENLMAELEKMGRIIKRVIPDAPHETLLALDASTGQNALSQAKE 430

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+  F +++F   + 
Sbjct: 431 FSKIMPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGEFDSEEFMKGLL 490

Query: 312 G 312
           G
Sbjct: 491 G 491


>gi|157831065|pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
           Protein Ffh From Thermus Aquaticus
          Length = 294

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/303 (28%), Positives = 140/303 (46%), Gaps = 18/303 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + V +  VE +  +   
Sbjct: 1   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 60

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V       + +L  V E + + L   ++          ++  +VG+ G GKTT   KL
Sbjct: 61  KQVLESLTPAEVILATVYEALKEALGGEAR---LPVLKDRNLWFLVGLQGSGKTTTAAKL 117

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL++  ++     +    G    ++     ++A+ 
Sbjct: 118 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 177

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL     
Sbjct: 178 EARDLILVDTAGRLQIDEPLMGELARLKEVLG------PDEVLLVLDAMTGQEALSVARA 231

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  +  I 
Sbjct: 232 FDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 291

Query: 312 GCL 314
           G  
Sbjct: 292 GMG 294


>gi|218884721|ref|YP_002429103.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Desulfurococcus kamchatkensis 1221n]
 gi|218766337|gb|ACL11736.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Desulfurococcus kamchatkensis 1221n]
          Length = 449

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/298 (29%), Positives = 143/298 (47%), Gaps = 15/298 (5%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV- 81
             ++  +T  +     +  V E + +L   L+R+D+ + +A +I   +  +    +    
Sbjct: 4   DNIRSALTRFLKGGDYEKSVEEFIRELQKELVRADVNLKLAVEITNRIKERALKSEPPPG 63

Query: 82  ----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
               +  +  V E + ++L    KP +     +P VI++VG+ G GKTT   KL+     
Sbjct: 64  ISRREWFITIVYEELTRLLGGDKKP-SIKPLKKPWVIMLVGLQGSGKTTTAAKLAYFYKL 122

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            G KV L A DTFR AA  QLK   ++           ++A ++A +       ++ D++
Sbjct: 123 EGYKVGLVAADTFRPAAYTQLKQLGEQIGVPVYGEPDNNNAVSIAVKGVSFFIERRTDII 182

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           IIDTAGR H    L+  + K+   +K      P  V+ V+DA+ GQ A    + FH    
Sbjct: 183 IIDTAGRHHKEEDLLDEMRKISEQVK------PDEVILVIDASIGQQAHNIAKKFHETTP 236

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              +I+TK+DGTA+GGG +  V      V F+G GE I++LE F    F + I G  D
Sbjct: 237 IGSIIVTKLDGTAKGGGALSAVAATGAMVKFIGTGEKIDELEVFNPPRFVSRILGLGD 294


>gi|320527196|ref|ZP_08028382.1| signal recognition particle protein [Solobacterium moorei F0204]
 gi|320132387|gb|EFW24931.1| signal recognition particle protein [Solobacterium moorei F0204]
          Length = 471

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 147/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L + + ++     L D     + +E+   L+ +D+   + ++ ++E+ TK  
Sbjct: 2   AFDSLSDRLNKALRNVAGKGTLTDNNMEDMLKEVRLALLEADVNYRIVKEFLDEIRTKSR 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+++  V + I ++L       N+        I++VG+ G GKTT + K
Sbjct: 62  GEEVLQSVEPGQQLVKIVHDQIIELLGTEETGLNF-VEDGITKIMLVGLQGTGKTTSVAK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +++   +    KV+L A D  R AAIDQL+        +       + A     +  + A
Sbjct: 121 IARICKEKFNKKVLLIAADVIRPAAIDQLQTLGKEIDTEVFTLGTETPAVETVRQGMEYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D + IDTAGRLH +  LM  +  +  ++       P+ +L  +DA TGQ+ +   
Sbjct: 181 EKNGFDTVFIDTAGRLHIDEALMNELKDINELVH------PNDILLTVDAMTGQDIVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TGL++TK DG +RGGG++ +     +P+ F+G GE I D++ F     +  
Sbjct: 235 QAFKDALPLTGLVVTKFDGDSRGGGVLSVKKITGVPIKFVGEGEKIEDMDIFHPDRMADR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|226226848|ref|YP_002760954.1| cell division protein FtsY [Gemmatimonas aurantiaca T-27]
 gi|226090039|dbj|BAH38484.1| cell division protein FtsY [Gemmatimonas aurantiaca T-27]
          Length = 309

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 113/295 (38%), Positives = 175/295 (59%), Gaps = 8/295 (2%)

Query: 25  SLKLKEGITDIISS------RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
              L + + DI+ +      + +D+G  E LE LLI SD GV  +  +V E+  +    +
Sbjct: 13  KRSLWQRVKDIVRTDVSVLFKGVDEGSLEALETLLIESDFGVPTSLALVAEVERRHKRGE 72

Query: 79  VSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           V  +          + + +    + P     +  P V+LV+GVNG GKTT IGKL+ +  
Sbjct: 73  VKTEAEFRQALADGVANALRTGNADPAMAMAASGPTVLLVIGVNGAGKTTFIGKLAAQYR 132

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             G +V++ A DTFR+ AIDQL++WA+R+ A+FV  + GSD A++AY+A     A+ +D+
Sbjct: 133 AQGKRVLVGAADTFRAGAIDQLRVWAERSGAEFVGGKPGSDPASVAYDAVDAGIARNMDL 192

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +I+DTAGRLH +  LM  + KM RV+ +  P APH +L VLD T GQNAL Q   F +  
Sbjct: 193 IIVDTAGRLHTSDDLMTELRKMHRVIGKRMPEAPHEILLVLDGTIGQNALSQARTFSSAV 252

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             TG+++TK+DGTA+GG ++ +     +P+ ++GVGE + DLEPF A  ++  + 
Sbjct: 253 PVTGVVVTKLDGTAKGGIVVAVHEALNVPIKYVGVGEQVGDLEPFDADVYAKELV 307


>gi|238926795|ref|ZP_04658555.1| signal recognition particle-docking protein FtsY [Selenomonas
           flueggei ATCC 43531]
 gi|238885327|gb|EEQ48965.1| signal recognition particle-docking protein FtsY [Selenomonas
           flueggei ATCC 43531]
          Length = 310

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 175/303 (57%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L KG   T       I   II    +DD + +ELE+ L+ +D+GV   + ++  
Sbjct: 1   MGFFDRLKKGLTKTRENFTHSIERLIIGYADIDDDLIDELEEALLMADVGVKTTEMLIAS 60

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +      K++     L   + + I ++L              P VILVVG NGVGKTT I
Sbjct: 61  VRKGIRNKEIQTPDDLIPFLEKEIVRILDRGESD-TPMADCPPTVILVVGTNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS      G  V+LAA DTFR+AAI+QL++W  R     +    GSD AA+ ++A + 
Sbjct: 120 GKLSAYYRHQGKSVLLAAADTFRAAAIEQLEVWGKRADVQVIKHGEGSDPAAVVFDALQA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A++ +++I+DTAGRL   S LM  + K+ RV+ R  P APH  L VLDA TGQNA+ Q
Sbjct: 180 ARARRTELVIVDTAGRLQTKSNLMQELEKIYRVIGREVPGAPHETLLVLDAGTGQNAISQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E+F   A  TG+++TK+DGTA+GG  I I     IP+ ++GVGEGI+DL PF A+DF  
Sbjct: 240 AELFSQAAPVTGVVLTKLDGTAKGGVTIGITAQLNIPIKWIGVGEGIDDLRPFHAEDFVN 299

Query: 309 VIT 311
            + 
Sbjct: 300 ALF 302


>gi|103488205|ref|YP_617766.1| signal recognition particle protein [Sphingopyxis alaskensis
           RB2256]
 gi|98978282|gb|ABF54433.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sphingopyxis
           alaskensis RB2256]
          Length = 484

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L +    +     L +        E+   L+ +D+ + V +  V+++      
Sbjct: 2   FDSLSNRLGDVFGKLRGRGALTEADVRAAMREVRIALLEADVALPVVRSFVDQVTELAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V++ + +ML   +   +   +  P VI++VG+ G GKTT   K+
Sbjct: 62  QNVLRSVTPGQQVVKIVNDALTEMLGSETAELDLAVA-PPAVIMMVGLQGSGKTTTTAKI 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +    KV++A+ D  R AA +QL +   +     +   +G     +A  A + A+
Sbjct: 121 AKRLREKERKKVLMASLDVNRPAAQEQLAVLGQQIDVATLPIIVGQQPVEIAQRALQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGRLH +  LM  +  + R             L V+D+ TGQ+A++  +
Sbjct: 181 LQGYDVLMLDTAGRLHVDQQLMDEMQAVSRTANPA------ETLLVVDSLTGQDAVQVAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++T+MDG ARGG  + +      P+ F G GE ++ LE F     +  I
Sbjct: 235 RFTDQVPLTGVVLTRMDGDARGGAALSMRAVTGKPIKFAGTGEKLDGLELFQPSRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|291542643|emb|CBL15753.1| signal recognition particle-docking protein FtsY [Ruminococcus
           bromii L2-63]
          Length = 304

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 131/303 (43%), Positives = 189/303 (62%), Gaps = 5/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + + +K+ +G   T   +   I  ++ S  ++DD + EELE+LL+  D+GV  A+KI +E
Sbjct: 1   MGFFKKIKEGLKKTRDAVVGQIDSMLKSFTKIDDELFEELEELLVMGDVGVPTAEKICKE 60

Query: 70  LLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +   + +     +  +  E+I  ML    +    D +  P +ILV+GVNGVGKTT I
Sbjct: 61  LRERVKKEGIKDPSEITSLLKEIIADMLRGGEE---LDLATSPSIILVIGVNGVGKTTTI 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  +S  G KV+LAA DTFR+AAI+QL+IWADR+  + +  + GSD AA+ Y+A   
Sbjct: 118 GKLANALSKEGKKVILAAADTFRAAAIEQLEIWADRSKCEIIKQKEGSDPAAVIYDAISA 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+  DV+I DTAGRLHN   LM  + K+ RV+ R  P A    L VLDATTGQNA+ Q
Sbjct: 178 AKARHADVIICDTAGRLHNKKHLMDELAKINRVIDRELPDASKEKLLVLDATTGQNAVNQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E F    G TG+++TK+DGTA+GG ++ I     IPV ++GVGE I+DL+PF    F+ 
Sbjct: 238 AEQFRQATGITGIVLTKLDGTAKGGVVLAIKDGLGIPVKYIGVGEQIDDLQPFNPDAFAD 297

Query: 309 VIT 311
            + 
Sbjct: 298 ALF 300


>gi|163733910|ref|ZP_02141352.1| signal recognition particle protein, putative [Roseobacter
           litoralis Och 149]
 gi|161393021|gb|EDQ17348.1| signal recognition particle protein, putative [Roseobacter
           litoralis Och 149]
          Length = 503

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  V+ +  K   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFVKAVQEKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L    +P      + P  +L+VG+ G GKTT   KL
Sbjct: 62  QAVTKSITPGQQVVKIVHDALIDVLKGEGEPGTLKVDNPPAPVLMVGLQGSGKTTTTAKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G +V++A+ D  R AA++QL I   +   D +    G D  A+A  A  QA 
Sbjct: 122 AKRLKEKDGKRVLMASLDVNRPAAMEQLAILGAQIGVDTLPIIAGQDPVAIAKRAKTQAG 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  +  LM        V    D   P   L V+D  TGQ+A+   +
Sbjct: 182 LGGYDVYMLDTAGRLSIDEELMQQ------VEAVRDVANPRETLLVVDGLTGQDAVHTAQ 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F     +  I
Sbjct: 236 NFDERIGISGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGLGEKMDALETFEPDRVAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|154686014|ref|YP_001421175.1| hypothetical protein RBAM_015810 [Bacillus amyloliquefaciens FZB42]
 gi|154351865|gb|ABS73944.1| Ffh [Bacillus amyloliquefaciens FZB42]
          Length = 446

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ I+ I    ++ +     +  E+   L+ +D+   V +  V+++  +  
Sbjct: 2   AFEGLADRLQKTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++              P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMQSLTPGQQVIKVVKEELTELMGGEESKIAV-AKRPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIARQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D +I+DTAGRLH +  LM  +  +  V        P  +  V+D+ TGQ+A+   
Sbjct: 181 KEEHHDYVILDTAGRLHIDHELMDELSGVKEVAN------PEEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+I+TK+DG  RGG  + I    + P+ F G+GE ++ LE F  +  ++ 
Sbjct: 235 KSFNDQLGLTGVILTKLDGDTRGGAALSIRAVTETPIKFAGMGEKLDALEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|56417159|ref|YP_154233.1| cell division protein [Anaplasma marginale str. St. Maries]
 gi|222475524|ref|YP_002563941.1| cell division protein (ftsY) [Anaplasma marginale str. Florida]
 gi|254995329|ref|ZP_05277519.1| cell division protein (ftsY) [Anaplasma marginale str. Mississippi]
 gi|255003510|ref|ZP_05278474.1| cell division protein (ftsY) [Anaplasma marginale str. Puerto Rico]
 gi|255004632|ref|ZP_05279433.1| cell division protein (ftsY) [Anaplasma marginale str. Virginia]
 gi|56388391|gb|AAV86978.1| cell division protein [Anaplasma marginale str. St. Maries]
 gi|222419662|gb|ACM49685.1| cell division protein (ftsY) [Anaplasma marginale str. Florida]
          Length = 305

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 122/301 (40%), Positives = 185/301 (61%), Gaps = 4/301 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
             +  L      TS KL  GI  +    +++D    +EL  LLI +D+G   A    +++
Sbjct: 6   GLLGSLKDSLLKTSSKLNAGIRKLFRDGQKVDQETLKELLHLLISTDMGRESASFFTQKI 65

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              +++ + S  RV   ++E I   L  ++ P      H P V+++ GVNG GKTT   K
Sbjct: 66  AAMQFS-EPSCARVRETLAEEIEAFLTKVAVPI--SIEHSPQVVMLCGVNGSGKTTTAAK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++K    G  V++ A DTFR+AA+ QLKIWADR S   +  E G+DAA++AY+A  QA 
Sbjct: 123 LARKFQREGKSVLMGACDTFRAAAVSQLKIWADRISCPIIAGEAGADAASIAYKAVDQAI 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +K+DV++IDTAGRL N+  LM  + K+ RV+ R D  APH+ + VLDAT GQNA  QVE
Sbjct: 183 REKIDVVLIDTAGRLQNHKNLMEELAKVRRVIGRHDKKAPHNTIIVLDATIGQNAFSQVE 242

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F + AG  G+++TK+DGTA+GG ++ +   + I ++ +GVGEGI+DL+ F A++F+  +
Sbjct: 243 LFSSFAGVNGIVLTKLDGTAKGGIVLSVAQKYGIHIHAVGVGEGIDDLKDFSAREFARGL 302

Query: 311 T 311
            
Sbjct: 303 L 303


>gi|220918542|ref|YP_002493846.1| signal recognition particle protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956396|gb|ACL66780.1| signal recognition particle protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 550

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 91/317 (28%), Positives = 149/317 (47%), Gaps = 24/317 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            +  ++KGF +   KLK      I+   +DD +R+ +   L+ +D+   V ++ V  +  
Sbjct: 1   MLETVSKGFKAARNKLKG--RTEITPEVVDDALRD-IRVSLLEADVSFDVVKRFVARVRE 57

Query: 73  KRYAKDVSVQ--------------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           K   + V  +                +    + +  ++ P+          RP  I++VG
Sbjct: 58  KAIGEVVETKVKTEKGQLRVTPQDHFVKICHDELEALMGPVDTSLRQGERGRPTGIMMVG 117

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT  GK++ ++   G +VML A D +R AA+DQLK+  +R        E G   
Sbjct: 118 LQGSGKTTTAGKIANRLLKDGKQVMLVAADVYRPAAVDQLKVLGERLGVPVF-HEPGVSP 176

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +   AF+ AQ    + +I DTAGRL  +  LM  +  +   +      AP ++L V D
Sbjct: 177 PDMCRHAFEAAQRDHRNAVIYDTAGRLAIDDELMTELENIKANV------APENILLVAD 230

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A++    F       G I+TK+DG ARGG  + I      P+ FLG+GE ++ L
Sbjct: 231 AMIGQDAVKTATEFDRRLAIDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGEALDRL 290

Query: 299 EPFVAKDFSAVITGCLD 315
           E F  +  ++ I G  D
Sbjct: 291 EEFRPEGLASRILGFGD 307


>gi|197123778|ref|YP_002135729.1| signal recognition particle protein [Anaeromyxobacter sp. K]
 gi|196173627|gb|ACG74600.1| signal recognition particle protein [Anaeromyxobacter sp. K]
          Length = 550

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 91/317 (28%), Positives = 150/317 (47%), Gaps = 24/317 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            +  ++KGF +   KLK      I+   +DD +R+ +   L+ +D+   V ++ V  +  
Sbjct: 1   MLETVSKGFKAARNKLKG--RTEITPEVVDDALRD-IRVSLLEADVSFDVVKRFVARVRE 57

Query: 73  KRYAKDVSVQ--------------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           K   + V  +                +    + +  ++ P+          RP  I++VG
Sbjct: 58  KAIGEVVETKVKTEKGQLRVTPQDHFVKICHDELEALMGPVDTSLRQGERGRPTGIMMVG 117

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT  GK++ ++   G +VML A D +R AA+DQLK+  +R        E G   
Sbjct: 118 LQGSGKTTTAGKIANRLLKDGKQVMLVAADVYRPAAVDQLKVLGERLGVPVF-HEPGVSP 176

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +   AF+ AQ +  + +I DTAGRL  +  LM  +  +   +      AP ++L V D
Sbjct: 177 PDMCRHAFEAAQREHRNAVIYDTAGRLAIDDELMTELENIKANV------APENILLVAD 230

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A++    F       G I+TK+DG ARGG  + I      P+ FLG+GE ++ L
Sbjct: 231 AMIGQDAVKTATEFDRRLAIDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGEALDRL 290

Query: 299 EPFVAKDFSAVITGCLD 315
           E F  +  ++ I G  D
Sbjct: 291 EEFRPEGLASRILGFGD 307


>gi|57239579|ref|YP_180715.1| cell division protein ftsY-like protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579567|ref|YP_197779.1| cell division protein ftsY-like protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617620|ref|YP_196819.1| cell division protein ftsY-like protein [Ehrlichia ruminantium str.
           Gardel]
 gi|57161658|emb|CAH58587.1| putative cell division protein FtsY [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417232|emb|CAI28345.1| Cell division protein ftsY homolog [Ehrlichia ruminantium str.
           Gardel]
 gi|58418193|emb|CAI27397.1| Cell division protein ftsY homolog [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 309

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 123/307 (40%), Positives = 196/307 (63%), Gaps = 4/307 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           +++  +   + K    TS KL +GI  I S S++++    EEL++LLI +DIG   A  +
Sbjct: 2   TDNQGFFSNIKKSLFKTSSKLSDGIKKIFSNSKKINQETLEELKELLITADIGYENASLL 61

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++++       +V+   +   ++E I  +L+ + KPF      +PHVI++ G NG GKTT
Sbjct: 62  IKKIAE-AKFDEVTDHTIKQKLAEEIENILLQVEKPF--SIIKKPHVIMICGTNGNGKTT 118

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL+ K  + G  V++AA DTFR+AA +QL +W+ +     V S  GSDAA++AY+A 
Sbjct: 119 TVGKLAYKFKNNGKSVLVAACDTFRAAATEQLTVWSQKVDFPIVTSTQGSDAASVAYQAM 178

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +QA   ++D+L++DTAGRLHN   LM  + K+ R++ + D  APH V+ +LDATTGQNAL
Sbjct: 179 QQALKNEIDILLVDTAGRLHNYKNLMEELAKIKRIIGKHDNEAPHDVVLILDATTGQNAL 238

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QVE+F      +GL++TK+DGTA+GG +I I   +K+ ++ +G+GE + DL+ F AK+F
Sbjct: 239 NQVEVFLQFVNISGLVITKLDGTAKGGVVIRIAQKYKLNIHAIGIGEQVEDLKDFSAKEF 298

Query: 307 SAVITGC 313
           +A +   
Sbjct: 299 TAGLLNM 305


>gi|118370390|ref|XP_001018396.1| signal recognition particle 54 kDa protein 1, SRP54 [Tetrahymena
           thermophila]
 gi|89300163|gb|EAR98151.1| signal recognition particle 54 kDa protein 1, SRP54 [Tetrahymena
           thermophila SB210]
          Length = 518

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 146/303 (48%), Gaps = 15/303 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTK--- 73
            A    ++   +  +  +  +D+     V +E++  L++SD+ V    K+   ++ K   
Sbjct: 3   LADLGKRINNALQQLNKAPVIDEELLNQVLKEIQLALLQSDVNVKYVAKLKSNIIMKFKM 62

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
             ++ V++++++   V + + +ML    KPF      +P+V++ VG+ G GKTT   K +
Sbjct: 63  EDSQGVNLKKMIQQAVVQELTQMLDSNKKPF-VPKRGKPNVVMFVGLQGAGKTTTCTKYA 121

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G +  L   DTFR+ A DQLK  A +    F  S   +D  A+A E  K  + +
Sbjct: 122 YHWQKKGWRTALICADTFRAGAFDQLKQNATKVRVPFYGSYSETDPVAIAEEGVKHFKKE 181

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             +++I+DT+GR    S L   + ++   +       P   + V+D + GQ    Q + F
Sbjct: 182 NYEMIIVDTSGRHKQESELFDEMKQVQAAVN------PDECIFVMDGSIGQACYDQAQAF 235

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                   +I+TK+DG A+GGG +  V   + P+ F+G GE   DLEPF  + F   + G
Sbjct: 236 RNAVNVGSVIITKLDGHAKGGGALSAVAATESPIIFIGTGEHFEDLEPFNPESFVKRLLG 295

Query: 313 CLD 315
             D
Sbjct: 296 LGD 298


>gi|309783054|ref|ZP_07677773.1| signal recognition particle protein [Ralstonia sp. 5_7_47FAA]
 gi|308918162|gb|EFP63840.1| signal recognition particle protein [Ralstonia sp. 5_7_47FAA]
          Length = 471

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 147/319 (46%), Gaps = 31/319 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L   +  +    RL +     +  E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   LDNLTQRLARVVKTMRGEARLTEANTAEMLREVRLALLEADVALPVVREFIARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIH--------------KMLMPLSKPFNWDFSHRPHVILVV 117
           +DV       Q ++  V   +                ++   +   N + +  P +IL+ 
Sbjct: 62  EDVITSLSPGQALVGIVQRELTAIIGGQEALEGVGSNIMGGRAAELNLNVT-PPAIILMA 120

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           G+ G GKTT +GKL+K + +   K +   + D +R AAI QLK  +++  ADF  S+   
Sbjct: 121 GLQGAGKTTTVGKLAKWLKENKKKKVLTVSCDVYRPAAIAQLKTVSEQVGADFFPSQPDQ 180

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
               +A  A   A+    DVLI+DTAGRL  +  +M  I  +   LK          L V
Sbjct: 181 KPVDIAAAALDWAKKHYHDVLIVDTAGRLGIDEAMMQEIAALHAKLKPA------ETLFV 234

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DA  GQ+A+   + F+     TG+++TK+DG ARGG  + +      P+ F+GV E ++
Sbjct: 235 VDAMLGQDAVNTAKAFNDTLPLTGVVLTKLDGDARGGAALSVRHITGKPIKFVGVAEKLD 294

Query: 297 DLEPFVAKDFSAVITGCLD 315
            LEPF     +  I G  D
Sbjct: 295 GLEPFYPDRMAQRILGMGD 313


>gi|307294709|ref|ZP_07574551.1| signal recognition particle protein [Sphingobium chlorophenolicum
           L-1]
 gi|306879183|gb|EFN10401.1| signal recognition particle protein [Sphingobium chlorophenolicum
           L-1]
          Length = 482

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   L+ +D+ + V ++ V++   +   
Sbjct: 2   FDSLSDRLGGVFDKLRGRGALTEDDVRAAMREVRIALLEADVALPVVRQFVDQATERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q V+  VS+ + + L   +     D +  P VI++VG+ G GKTT   K+
Sbjct: 62  SDVLRSVTPGQMVVKIVSDTLTETLGAETSDLLIDVT-PPAVIMMVGLQGSGKTTSTAKI 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +   K + +A+ D  R AA +QL +   +T    +    G     +A  A + A+
Sbjct: 121 AKRLKEKERKKVLMASLDVQRPAAQEQLAVLGTQTDVATLPIVPGQQPVEIAKRALQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+++DTAGRLH +  LM  +  +  V           +L V+D+ TGQ+A+    
Sbjct: 181 LQGFDVVMLDTAGRLHVDQALMDEMKAVAEVSNPA------EILLVVDSLTGQDAVNVAT 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F +    TG+++T+MDG ARGG  + +      P+ F G GE ++ +EPF     +  I
Sbjct: 235 SFTSQVPLTGVVLTRMDGDARGGAALSMRAVTGRPIKFAGTGEKLDAIEPFHPARVAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|326388656|ref|ZP_08210249.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206907|gb|EGD57731.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 495

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   L+ +D+ + V ++ ++ +  +   
Sbjct: 2   FDSLSDRLSGVFDRLRGRGALTEDDVRAAMREVRIALLEADVALPVVRRFIDAVTEQAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q+V+  V + + +ML   +   +   +  P VI++VG+ G GKTT   K+
Sbjct: 62  QQVLRSVTPGQQVVKIVHDALVEMLGGGTSDLDL-AATPPVVIMMVGLQGSGKTTSTAKI 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +    G KV++A+ D  R AA +QL +   +     +    G     +A  A + A+
Sbjct: 121 GKLLKEKQGKKVLMASLDVNRPAAQEQLAVLGGQVGVATLPIVPGQQPVEIANRAIQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DVL++DTAGRLH +  LM  +  +  V       +P   L V+D+ TGQ+A+   +
Sbjct: 181 LQAIDVLLLDTAGRLHVDQALMDEMKAVAAV------SSPRETLLVVDSLTGQDAVNVAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++T+MDG ARGG  + +      P+ F   GE ++ +E F  +  ++ I
Sbjct: 235 SFAGEVPLTGVVLTRMDGDARGGAALSMRAVTGKPIKFAATGEKLDAIEAFHPERVASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|47214799|emb|CAF89626.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 514

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E +      
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCAALLEADVNIKLVKQLRENVKAAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ +R++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRRMIQHAVFKELVKLVDPGVKAWT-PTKGKNNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E   + +A
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVVIATEGVDKFKA 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L+  +   P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEM------LQVSNAVQPDNIVYVMDASIGQACESQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATRSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|262341286|ref|YP_003284141.1| cell division protein FtsY [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272623|gb|ACY40531.1| cell division protein FtsY [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 317

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 106/293 (36%), Positives = 174/293 (59%), Gaps = 5/293 (1%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
              T       I ++     +++  V +++ED+L+ +DIG+    KI++ L  +   +  
Sbjct: 20  LKKTRESFFSKIKNLFLRKSKIEINVIDQMEDILLSADIGIPTTIKIIDNLEKRIQKEKY 79

Query: 80  SVQRVLYDV-SELIHKMLMPLSKP---FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              + LY++  + I  + + +             +P+VI++VGVNGVGKTT IGKL+  +
Sbjct: 80  RDTQDLYNLLKKEIENLFINIKNECLEKKIKSHKKPYVIMMVGVNGVGKTTTIGKLAFLL 139

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G   ++ A DTFR+AAIDQL+IWA++     +   + +D A++AY+  + A++K+ D
Sbjct: 140 KKKGFHSIIGASDTFRAAAIDQLEIWANKAKVPLIKQHMYADPASVAYDTLQSAKSKEKD 199

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V++IDTAGRL N   LM  + K+ RV+K++ P +PH ++ VLDA+TGQNA  QV+ F   
Sbjct: 200 VVLIDTAGRLQNRIGLMEELSKISRVMKKIIPESPHEIMLVLDASTGQNAFEQVKKFTFF 259

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              + +++TK++GTA+GG  I I+   KIP+ +LG GE I DL+ F  K F  
Sbjct: 260 VKISSIVLTKIEGTAKGGVAIGIMDQFKIPIQYLGTGEKIQDLKEFDGKKFIN 312


>gi|312877058|ref|ZP_07737031.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796199|gb|EFR12555.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 301

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 187/302 (61%), Gaps = 4/302 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     E +  ++ S +++DD + EELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFFDRLKEGLSKTKKNFTEKVESLLKSFKQVDDELFEELEEVLVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  K   + +S       V EL+ + ++ +    N      P +IL+VGVNGVGKTT IG
Sbjct: 61  LKEKVKKEKISATE---AVKELLKEEMLSIINLENKLSEKYPLIILMVGVNGVGKTTSIG 117

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++  +   G KV++AA DTFR+AA +QL+IWA R   D +    GSD AA+ ++  +  
Sbjct: 118 KIANLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGSDPAAVVFDGIQAM 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQNAL Q 
Sbjct: 178 RARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEASKETLLVIDATTGQNALNQA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      +G+++TK+DGTA+GG +I I    KIPV F+GVGE I+DL+ F AK+F   
Sbjct: 238 KEFDQAVNISGIVLTKLDGTAKGGIIISICDELKIPVKFVGVGEKIDDLQYFNAKEFVDA 297

Query: 310 IT 311
           + 
Sbjct: 298 LF 299


>gi|254292886|ref|YP_003058909.1| signal recognition particle protein [Hirschia baltica ATCC 49814]
 gi|254041417|gb|ACT58212.1| signal recognition particle protein [Hirschia baltica ATCC 49814]
          Length = 501

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L      +     L +        E+   L+ +D+ + V ++ + ++  K   
Sbjct: 2   FDALTDRLSGVFDGLTGKGSLSEKDVSSALREIRVALLEADVALDVVKQFIADIKPKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+V+  V++ + +ML    +       + P VI++ G+ G GKTT  GKL
Sbjct: 62  EDVIRSVKPGQQVIKIVNDGLVEMLGGNEEAQGLRIDNIPAVIMMAGLQGSGKTTTTGKL 121

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++ +    KV++A+ D +R AA+ QLK+  ++   D +    G     +A  A   A+
Sbjct: 122 ARRLKNHDRKKVLMASLDVYRPAAMHQLKVLGEQIEVDTLPITDGQMPVDIAKRAVNAAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR   +  +M    ++               + V DA TGQ+A+    
Sbjct: 182 LGGYDVVILDTAGRTTLDEQMMGEAAQVAEFANPA------ETILVADALTGQDAVETAR 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TGLI+T+MDG  RGG  + +     +P+ FLG GE  + LE F A+  +  I
Sbjct: 236 RFNDRLKLTGLILTRMDGDGRGGAALSMRAVTGLPIKFLGTGEKSDGLEVFDARRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGQGD 300


>gi|315121876|ref|YP_004062365.1| signal recognition particle protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495278|gb|ADR51877.1| signal recognition particle protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 461

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 139/305 (45%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L      I     L +        E+    + +D+ + V Q + E +  K   
Sbjct: 2   FENLQERLGSVFQKITGRGNLSETDISKTLREIRRTFLEADVSLEVVQALNERIQEKAKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +       Q V+  V + + ++L   +   + + +  P VI++VG+ G GKTT   K+
Sbjct: 62  AKILKSIQPGQMVVKIVHDELIEVLGTENVGLDLN-APSPLVIMLVGLQGSGKTTTTAKI 120

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +     K ML A+ D  R AA +QL+   ++   D +        A +A  A + A+
Sbjct: 121 AYHLKTLKKKKMLMASLDIHRPAAQEQLRYLGEKIQVDTLEVVPKQLPAEIATRAIQNAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+I+DTAGR H N  LM  I ++  +        PH +L V DA TGQ+A+    
Sbjct: 181 DRGYDVVILDTAGRNHINESLMQEISEVKSLTN------PHEILLVADALTGQDAVHLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+I+T+MDG  RGG  + +      P+  +G GE I+DLE F        I
Sbjct: 235 NFDEKIGLTGIILTRMDGDGRGGAALSMRFVTGKPIKAIGTGEKIDDLENFFPDRVVNRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|33864550|ref|NP_896109.1| signal recognition particle docking protein FtsY [Synechococcus sp.
           WH 8102]
 gi|33632073|emb|CAE06526.1| signal recognition particle docking protein FtsY [Synechococcus sp.
           WH 8102]
          Length = 485

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 104/312 (33%), Positives = 171/312 (54%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            ++ E + W+ +L +G   T      G+ + +    L   V ++LE LL+R+D GV    
Sbjct: 171 DISLEEIDWLGRLRRGLEKTRQGFVSGLLENLGDDPLTPEVLDDLETLLLRADAGVQATD 230

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVN 120
           ++++ L  +   + V     +  + E +  +L                 R ++ L+VGVN
Sbjct: 231 QVLDALRQRMNVEVVDPAEGIRFLKEQLRGLLDAPIAASGAQLIAPERDRLNIWLMVGVN 290

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+++W  R+    V +   + D A
Sbjct: 291 GVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVQQVQVWGKRSDVPVVSNPSSNADPA 350

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+++  D+L++DTAGRL     LM  + K+ +++ RL P A    L +LDA
Sbjct: 351 AVVFDAIGAARSRGTDLLLVDTAGRLQTKHNLMEELQKVRKIIDRLAPEAKVESLLILDA 410

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN LRQ   F   AG TG+++TK+DGTARGG  + +     +P+ F+G GEGI DL 
Sbjct: 411 SQGQNGLRQAMAFAKAAGLTGVVITKLDGTARGGVALAVSSEAGLPIRFIGAGEGIRDLR 470

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 471 PFNSYEFVEALL 482


>gi|156743415|ref|YP_001433544.1| signal recognition particle-docking protein FtsY [Roseiflexus
           castenholzii DSM 13941]
 gi|156234743|gb|ABU59526.1| signal recognition particle-docking protein FtsY [Roseiflexus
           castenholzii DSM 13941]
          Length = 326

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 108/313 (34%), Positives = 168/313 (53%), Gaps = 9/313 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGV 60
           S ++   E     +K+ +  A     L   I  +  +   + D + ++LE LLI++D+GV
Sbjct: 17  SEEEARQEE----QKIDRATAKARHGLFGQIASLFATDEPITDELWDDLEALLIQADVGV 72

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
                +V     +     V   R   D +   + ++L    +      +  P ++LVVGV
Sbjct: 73  ETTMYLVNRTKDRCNRYGVKRAREARDMLKAEMVRVLQEQER--RQPVNANPSIVLVVGV 130

Query: 120 NGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           NG GKTT+I KL+ ++ +  G +V+LAAGDTFR+AA +QL+ WA+R     +    G+D 
Sbjct: 131 NGAGKTTLIAKLAYRLKNQFGKRVLLAAGDTFRAAATEQLETWAERVGVPVISRGQGADP 190

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            A+ Y+A +       DVLIIDTAGRLH  + LM  + K+  +++R  P APH VL V+D
Sbjct: 191 GAVVYDAIEAVSGGDFDVLIIDTAGRLHAKTNLMLELQKLRNIIRRKFPDAPHEVLLVID 250

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN + Q + F      T + +TK+DGTA+GG    I    + P+ ++G GE + DL
Sbjct: 251 ATTGQNGVLQAKSFLKAVDVTDVAVTKLDGTAKGGIAFAIAQDIERPIRYVGTGEKMTDL 310

Query: 299 EPFVAKDFSAVIT 311
             F A+ F   + 
Sbjct: 311 ALFDAETFVESLF 323


>gi|121595813|ref|YP_987709.1| signal recognition particle-docking protein FtsY [Acidovorax sp.
           JS42]
 gi|120607893|gb|ABM43633.1| signal recognition particle-docking protein FtsY [Acidovorax sp.
           JS42]
          Length = 382

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 181/311 (58%), Gaps = 7/311 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
              K       W+ +L  G   T       I  + +  +++D + +ELE+ L+ +D GV 
Sbjct: 77  PTPKPGGARQGWMDRLKSGLRKT----GSSIATVFTGTQINDALYDELEEALLMADTGVK 132

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             Q ++E+L  +      +    +   +++ +  +L PL KP      H P VI+V GVN
Sbjct: 133 ATQHLLEDLKRRVKETKTTEPAAVKGLLADALADLLRPLEKPLVIG-EHTPTVIMVAGVN 191

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+K ++D G  V+LAA DTFR+AA +QL +WA R + + V S+ G D AA
Sbjct: 192 GAGKTTSIGKLTKHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEIV-SQEGGDPAA 250

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           ++++A    +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  
Sbjct: 251 VSFDAVTAGRARGKDVVLVDTAGRLPTQLHLMEELKKIRRVVTKADASAPHEVLLVIDGN 310

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNAL QV  F      TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DLE 
Sbjct: 311 TGQNALAQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLET 370

Query: 301 FVAKDFSAVIT 311
           F A++F+  + 
Sbjct: 371 FSAREFAQALL 381


>gi|33862622|ref|NP_894182.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9313]
 gi|33634538|emb|CAE20524.1| signal recognition particle protein (SRP54) [Prochlorococcus
           marinus str. MIT 9313]
          Length = 497

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S + ++ +  +    ++ D       +++   L+ +D+ + V ++ VEE+  K   
Sbjct: 2   FEELSARFEDAVKGLRGQAKISDTNVEDALKQVRRALLGADVSLEVVREFVEEVRQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+ +  V + + +++   + P   +    P V+L+ G+ G GKTT   KL
Sbjct: 62  AEVVRGVTPDQKFVQVVHQQLVEVMGGDNAPM-AEAEDSPTVVLMAGLQGAGKTTATAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              + D G + ++ A D +R AAIDQL+   ++   D            +A     +A+ 
Sbjct: 121 GLHLKDQGQRPLMVAADVYRPAAIDQLRTLGEQIGVDVFSLGDDVKPEEIAAAGLAKARE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D L++DTAGRL  ++ +M  + ++   ++      P  VL V+D+  GQ A      
Sbjct: 181 EGFDTLLVDTAGRLQIDTEMMEEMVRIRSAVE------PDEVLLVVDSMIGQEAAELTRA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG ++TK+DG +RGG  + I      P+ F+G GE +  L+PF  +  ++ I 
Sbjct: 235 FHDKVGITGSVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|28197993|ref|NP_778307.1| signal recognition particle protein [Xylella fastidiosa Temecula1]
 gi|182680619|ref|YP_001828779.1| signal recognition particle protein [Xylella fastidiosa M23]
 gi|28056053|gb|AAO27956.1| signal recognition particle protein [Xylella fastidiosa Temecula1]
 gi|182630729|gb|ACB91505.1| signal recognition particle protein [Xylella fastidiosa M23]
 gi|307579077|gb|ADN63046.1| signal recognition particle protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 455

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   I  +    RL ++ +RE   E+   L+ +D+ ++V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALSVVQALIERIKIRALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P VIL+ G+ G GKT+++GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELAAVMGDSASELNLNVPA-PAVILLAGLQGAGKTSMVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QL+I +++ +     S +  +   +   A   A+
Sbjct: 121 AKYLKEKRKKKVMVVSADVYRPAAIEQLRILSEQVNVLCFPSSVEQNPVDIVRAAIADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  +  +M  I  +       D   P   L V+D+ TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDQGMMDEIKALH------DTLVPVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TGLI+TK DG ARGGG + +      P+ F+G GE ++DL+ F     +  I
Sbjct: 235 AFSEALPLTGLILTKTDGDARGGGALSVRYITGRPIKFVGTGEKVDDLDVFHPDRAAKRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|71901947|ref|ZP_00684000.1| Signal recognition particle protein [Xylella fastidiosa Ann-1]
 gi|71728288|gb|EAO30466.1| Signal recognition particle protein [Xylella fastidiosa Ann-1]
          Length = 455

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   I  +    RL ++ +RE   E+   L+ +D+ ++V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALSVVQALIERIKIRALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P VIL+ G+ G GKT+++GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELAAVMGDSASELNLNVPA-PAVILLAGLQGAGKTSMVGKL 120

Query: 132 SKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K VM+ + D +R AAI+QL+I +++ +     S +  +   +   A   A+
Sbjct: 121 AKYLKEKRKKKVMVVSADVYRPAAIEQLRILSEQVNVLCFPSSVEQNPVDIVRAAIADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  +  +M  I  +       D   P   L V+D+ TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDQGMMDEIKALH------DTLVPVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG ARGGG + +      P+ F+G GE ++DL+ F     +  I
Sbjct: 235 AFSEALPLTGVILTKTDGDARGGGALSVRYITGRPIKFVGTGEKVDDLDVFHPDRAAKRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|241890047|ref|ZP_04777345.1| signal recognition particle protein [Gemella haemolysans ATCC
           10379]
 gi|241863669|gb|EER68053.1| signal recognition particle protein [Gemella haemolysans ATCC
           10379]
          Length = 450

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 20/306 (6%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S +L+  I  +    ++ +     +  E+   L+ +D+   V ++ V+++  +  
Sbjct: 2   AFENLSERLQNTIAKLTGKGKVSEADVKEMMREVRLALLEADVNFKVVKEFVKKISERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E +  +L   +   N     +   +++VG+ G GKTT  GK
Sbjct: 62  GTEVMKSLTPAQQVVKIVNEELVDLLGGSNVELNQG--GKITTVMMVGLQGAGKTTTAGK 119

Query: 131 LSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ K+     K  +L A D +R AA+ QLK    +   +     +  D   +  +    A
Sbjct: 120 LALKVKKTMKKKPLLIAADVYRPAAVQQLKTLGKQLDIEVF--YVDKDPVDIVKDGLAFA 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    + +IIDTAGRLH + +LM  +  +           P  +L V+D+  GQ A+   
Sbjct: 178 KENYFNYVIIDTAGRLHIDELLMDELKNIKAATT------PDEILLVVDSMIGQEAVNIA 231

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F      TGL++TK+DG  RGG  + I      P+  +G+GE +NDLE F  +  ++ 
Sbjct: 232 TSFDEQLDITGLVLTKLDGDTRGGAALSIKSITGKPIKLVGMGEKMNDLELFHPERMASR 291

Query: 310 ITGCLD 315
           I G  D
Sbjct: 292 ILGMGD 297


>gi|126724941|ref|ZP_01740784.1| signal recognition particle protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126706105|gb|EBA05195.1| signal recognition particle protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 499

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L D+ V+  L +    L+ +D+ +AVA+  V+ +  K   
Sbjct: 2   FENLSDRLSGVFDRLTKQGALSDEDVKTALREVRVALLEADVSLAVARDFVKAVQDKASG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           + V+      Q+V+  V + +  +L   +  P      + P  IL+VG+ G GKTT   K
Sbjct: 62  QAVTKSVTPGQQVVKIVHDELVHVLAGDNAVPGELKIDNAPAPILMVGLQGSGKTTTTAK 121

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K++++  G +V++A+ D  R AA++QL I  ++   D +    G     +A  A +QA
Sbjct: 122 LAKRLTEKNGKRVLMASLDVNRPAAMEQLAILGNQIGVDTLPIVAGQKPVDIAKRAKQQA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV ++DTAGRLH + +LM  +  +  V K      P   L V+D  TGQ+A+   
Sbjct: 182 TLGGYDVYMLDTAGRLHIDEVLMEEVETVRDVTK------PRETLLVVDGLTGQDAVNVA 235

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  
Sbjct: 236 EEFDGKIGVSGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGLGEKMDALEEFHPERVAGR 295

Query: 310 ITGCLD 315
           I G  D
Sbjct: 296 ILGMGD 301


>gi|69246108|ref|ZP_00603814.1| Cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium DO]
 gi|227550771|ref|ZP_03980820.1| signal recognition particle docking protein FtsY [Enterococcus
           faecium TX1330]
 gi|257878773|ref|ZP_05658426.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,230,933]
 gi|257881413|ref|ZP_05661066.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,502]
 gi|257885681|ref|ZP_05665334.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,501]
 gi|257887972|ref|ZP_05667625.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,141,733]
 gi|257890631|ref|ZP_05670284.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,410]
 gi|257893225|ref|ZP_05672878.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,408]
 gi|257896410|ref|ZP_05676063.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium Com12]
 gi|257899384|ref|ZP_05679037.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium Com15]
 gi|258615161|ref|ZP_05712931.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium DO]
 gi|293379495|ref|ZP_06625639.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium PC4.1]
 gi|293562994|ref|ZP_06677461.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1162]
 gi|293567877|ref|ZP_06679218.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1071]
 gi|293570733|ref|ZP_06681783.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E980]
 gi|294621995|ref|ZP_06701139.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium U0317]
 gi|314937657|ref|ZP_07844983.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133a04]
 gi|314942844|ref|ZP_07849657.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133C]
 gi|314948020|ref|ZP_07851424.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0082]
 gi|314950938|ref|ZP_07854007.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133A]
 gi|314991414|ref|ZP_07856891.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133B]
 gi|314995065|ref|ZP_07860185.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133a01]
 gi|68195403|gb|EAN09850.1| Cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium DO]
 gi|227180089|gb|EEI61061.1| signal recognition particle docking protein FtsY [Enterococcus
           faecium TX1330]
 gi|257813001|gb|EEV41759.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,230,933]
 gi|257817071|gb|EEV44399.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,502]
 gi|257821537|gb|EEV48667.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,501]
 gi|257824026|gb|EEV50958.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,141,733]
 gi|257826991|gb|EEV53617.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,410]
 gi|257829604|gb|EEV56211.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium 1,231,408]
 gi|257832975|gb|EEV59396.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium Com12]
 gi|257837296|gb|EEV62370.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium Com15]
 gi|291589462|gb|EFF21269.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1071]
 gi|291598422|gb|EFF29495.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium U0317]
 gi|291605120|gb|EFF34587.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1162]
 gi|291609205|gb|EFF38477.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E980]
 gi|292642018|gb|EFF60184.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium PC4.1]
 gi|313590791|gb|EFR69636.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133a01]
 gi|313593894|gb|EFR72739.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133B]
 gi|313596947|gb|EFR75792.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133A]
 gi|313598316|gb|EFR77161.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133C]
 gi|313643034|gb|EFS07614.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0133a04]
 gi|313645618|gb|EFS10198.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium TX0082]
          Length = 332

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 122/311 (39%), Positives = 179/311 (57%), Gaps = 11/311 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           +  +E +    K  KG   T     E + ++ ++ R +D+   EELE+ LI +D+G   A
Sbjct: 14  EEKTEEVEVQEKYDKGLEKTRKTFGERMNELFANFRTVDEDFFEELEETLIGADVGFETA 73

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-------SHRPHVILV 116
            +I E L  +   ++        +V   I + L+ L +    +             VIL 
Sbjct: 74  IRITEALRQEVKLRNAKKS---AEVQNAIIEKLVDLYEAEGINEVNELNIQEDGLTVILF 130

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ +  + G KV++AA DTFR+ AIDQL +W +R   + V    G 
Sbjct: 131 VGVNGVGKTTSIGKLAHQFKNEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGG 190

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A ++A+ ++ DVL++DTAGRL N   LM  + K+ RV++R  P AP   L V
Sbjct: 191 DPAAVVFDALERAKTEQADVLLVDTAGRLQNKVNLMNELEKIKRVIQRELPEAPQETLLV 250

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q + F      TGL++TK+DGTA+GG ++ I     +PV  +G+GEGI+
Sbjct: 251 LDATTGQNAMVQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELHLPVKLVGLGEGID 310

Query: 297 DLEPFVAKDFS 307
           DLEPF   DF 
Sbjct: 311 DLEPFDPNDFV 321


>gi|282850847|ref|ZP_06260221.1| signal recognition particle protein [Lactobacillus gasseri 224-1]
 gi|282557799|gb|EFB63387.1| signal recognition particle protein [Lactobacillus gasseri 224-1]
          Length = 440

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/272 (31%), Positives = 136/272 (50%), Gaps = 14/272 (5%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNW 105
             L+ +D+   V +  ++++  +   K+V       Q+++  V + + KM+   +   N 
Sbjct: 1   MALLEADVNFKVVKDFIKKIKKEALGKEVQESLNPGQQIIKIVDDELTKMMGEEAVSLNK 60

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              H P +I++VG+ G GKTT +GKL+  +  +   + +L AGD +R AAIDQLK    +
Sbjct: 61  S-QHIPTIIMMVGLQGTGKTTTVGKLANYLMKNEKARPLLIAGDIYRPAAIDQLKQIGQQ 119

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            +     SE   D A +     ++A   K D ++IDTAGRL  +  LM     + RV   
Sbjct: 120 LNVPVY-SEDNQDVAEIVKHGLEEADKNKNDYVLIDTAGRLEIDEQLMDE---LKRVTAV 175

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
             P    + L V+DA TGQ A +  E F+     TG+I+TK+DG  RGG  + I     +
Sbjct: 176 AHP---DNTLLVVDAMTGQAATQVAEGFNNDLDLTGIILTKLDGDTRGGAALSIRAVTGL 232

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           P+ F G GE + DL  F     ++ I G  D 
Sbjct: 233 PIIFTGQGEKLTDLSTFHPDRMASRILGMGDM 264


>gi|313906052|ref|ZP_07839404.1| signal recognition particle-docking protein FtsY [Eubacterium
           cellulosolvens 6]
 gi|313469097|gb|EFR64447.1| signal recognition particle-docking protein FtsY [Eubacterium
           cellulosolvens 6]
          Length = 307

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 173/309 (55%), Gaps = 3/309 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + + ++L  G   +   ++E + +      +DD   E LE+ L+ SD+G+   Q ++E L
Sbjct: 1   MGFFKRLFSGLTKSRDSIQENLDEAFGCSEIDDEFYENLEEALVASDMGIETTQTVIENL 60

Query: 71  LTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                  D+         + +   + +       ++ F  R  V+L++GVNGVGKTT +G
Sbjct: 61  QDIVADLDIKKPADCKKYMVDCFRQQMN--VGQTDYSFEDRKSVVLIIGVNGVGKTTTVG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K    G KVM+AA DTFR+AAI QL+ WA+R   + +  + G+D A++ Y+A   A
Sbjct: 119 KLAAKYKATGKKVMIAAADTFRAAAIPQLETWANRAGVEIIEGQEGADPASVVYDAISAA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D+L+IDTAGRLHN   LM  + K+ R+L +  P A    L VLD TTGQNA+ Q 
Sbjct: 179 KARDTDMLLIDTAGRLHNKKNLMEELRKIYRILAKSYPEASLETLLVLDGTTGQNAILQA 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F  VA  TGL++TK+DGTA+GG  + +     IPV ++GVGE ++DL+ F    +   
Sbjct: 239 RSFAEVADITGLVITKLDGTAKGGIAVAVQSELDIPVKYIGVGEQLDDLQKFDPSAYVDA 298

Query: 310 ITGCLDYGE 318
           +       +
Sbjct: 299 LFDTGRRDD 307


>gi|210612577|ref|ZP_03289368.1| hypothetical protein CLONEX_01570 [Clostridium nexile DSM 1787]
 gi|210151502|gb|EEA82509.1| hypothetical protein CLONEX_01570 [Clostridium nexile DSM 1787]
          Length = 309

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 127/305 (41%), Positives = 182/305 (59%), Gaps = 4/305 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E   + ++L +G   T   +  GI  I +    +DD   EELE++LI  D+GV    +++
Sbjct: 3   EKKGFFKRLVEGLTKTRDNIVSGIDSIFNGFSNIDDDFYEELEEILIMGDLGVHATMEVI 62

Query: 68  EELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           E+L  K     +         + + I + +        ++F  R  V+L++GVNGVGKTT
Sbjct: 63  EDLKKKVKENHIKEPADCKQFLIDSIKEQMD--VGEAAYEFEDRTSVVLIIGVNGVGKTT 120

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ K+     KV+LAA DTFR+AA +QLK WA+R  A+ +  + GSD A++ Y+A 
Sbjct: 121 TIGKLAGKLRAQNKKVVLAAADTFRAAAGEQLKEWANRAEAELIGGQEGSDPASVVYDAV 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+A+K DVL++DTAGRLHN   LM  + K+ RVL+R  P A    L VLD TTGQNAL
Sbjct: 181 AAAKARKADVLLVDTAGRLHNKKNLMEELRKINRVLEREYPDAYRETLVVLDGTTGQNAL 240

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F  VA  TG+++TKMDGTA+GG  + I     IPV ++GVGE I+DL+ F + DF
Sbjct: 241 AQAKEFKDVADITGIVLTKMDGTAKGGIAVAIQSELGIPVKYIGVGESIDDLQKFNSDDF 300

Query: 307 SAVIT 311
              + 
Sbjct: 301 VDALF 305


>gi|304382717|ref|ZP_07365209.1| cell division protein FtsY [Prevotella marshii DSM 16973]
 gi|304336168|gb|EFM02412.1| cell division protein FtsY [Prevotella marshii DSM 16973]
          Length = 319

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 182/301 (60%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T   +   +T  I    ++DD V ++LE++LI SD+GV    KI+  +  +  
Sbjct: 15  LDKGLEKTKQSVFGKLTRAIAGKSKVDDDVLDDLEEVLITSDVGVDTTLKIIHRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   + + I ++L       ++ ++    H P+VIL+VGVNGVGKTT IGK
Sbjct: 75  RDKYVSTAELNEVLRDEITQLLSENHSSDNEQWDLPTDHHPYVILIVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV L A DTFR+AAIDQL IW +R     +  ++GSD A++A++    A+
Sbjct: 135 LAYQFKKAGKKVYLGAADTFRAAAIDQLCIWGERVGVPVIKQQMGSDPASVAFDTISSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  V+ VLD +TGQNA  Q +
Sbjct: 195 ANGADVVLIDTAGRLHNKVGLMNELKKIKDVMKKVVPTAPDEVMLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   TGL +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F  + F   +
Sbjct: 255 QFAAVTQITGLTITKLDGTAKGGVVIGISDQMKVPVKYIGLGEGMEDLQLFHRQQFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|149201382|ref|ZP_01878357.1| signal recognition particle protein [Roseovarius sp. TM1035]
 gi|149145715|gb|EDM33741.1| signal recognition particle protein [Roseovarius sp. TM1035]
          Length = 504

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  ++ + ++   
Sbjct: 2   FENLSERLSGVFDRLTKQGSLSEEDVKTALREVRVALLEADVSLPVARDFIKTVESRATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + + + L     P      + P  IL+VG+ G GKTT   KL
Sbjct: 62  QAVTKSVTPGQQVVKIVHDALVETLRGEGDPGALKIDNPPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++    G +V++A+ DT R AA++QL I   +   D +    G D   +A  A  QA 
Sbjct: 122 AKRLKDREGKRVLMASLDTNRPAAMEQLAILGKQIGVDTLPIVKGEDPVQIAKRAKTQAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH ++ L+A    +       D   P   L V+D  TGQ+A+    
Sbjct: 182 LGGYDVYMLDTAGRLHIDAELIAQAAAV------RDVANPRETLLVVDGLTGQDAVNVAT 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F     +  I
Sbjct: 236 EFDDKIGVTGVVLTRMDGDGRGGAALSMRAITGKPIRFVGLGEKMDALETFEPDRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|56698078|ref|YP_168449.1| signal recognition particle protein [Ruegeria pomeroyi DSS-3]
 gi|56679815|gb|AAV96481.1| signal recognition particle protein [Ruegeria pomeroyi DSS-3]
          Length = 510

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  V+ +  K   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFVKAVQDKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L     P      + P  IL+VG+ G GKTT   KL
Sbjct: 62  QAVTKSVTPGQQVVKIVHDTLVDVLRGAEDPGKLKIDNPPAPILMVGLQGGGKTTTTAKL 121

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++    G KV++A+ D +R AA+DQL +   +   D +    G     +A  A +QA 
Sbjct: 122 AKRLKEREGKKVLMASLDVYRPAAMDQLAVLGAQIGVDTLPIVPGQKPVDIAKRAKQQAM 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH + +LM  +  +  V+       P   L V+D  TGQ A+   E
Sbjct: 182 MGGYDVYMLDTAGRLHIDQVLMQEVEDVRNVVT------PRETLLVVDGLTGQVAVEVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A  G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  I
Sbjct: 236 EFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|313674513|ref|YP_004052509.1| signal recognition particle subunit ffh/srp54 (srp54) [Marivirga
           tractuosa DSM 4126]
 gi|312941211|gb|ADR20401.1| signal recognition particle subunit FFH/SRP54 (srp54) [Marivirga
           tractuosa DSM 4126]
          Length = 443

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 145/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL      +    ++ +       +E+   L+ +D+   VA+ + + +  +   
Sbjct: 2   FDNLSYKLDRAFKTLKGQGQITEVNVATTVKEIRRALVDADVNFKVAKDVTDRIKEEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q ++    E + KM+    K  +      P  IL+ G+ G GKTT  GKL
Sbjct: 62  RDVLISVSPGQLLVKITQEELAKMMGE--KQVDISTEGSPSTILISGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++   G +V+LAA D +R AAIDQLK+  ++   +        DA  +A  A K A+ 
Sbjct: 120 ANRLKKQGKQVLLAACDIYRPAAIDQLKVLGEQIGVEVYAEPENKDAVKIAKNAIKFAKD 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
               ++I+DTAGRL  + ++M  I  + + L       P   L V+D+ TGQ+A+   + 
Sbjct: 180 NGKSIVIVDTAGRLAVDEVMMKEISSLKKELN------PSETLFVVDSMTGQDAVNTAKT 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG  RGG  + I    + P+ F+  GE +  ++ F     +  I 
Sbjct: 234 FNEQLDFDGVVLTKLDGDTRGGAALSIRTVVEKPIKFISSGEKMEAIDLFYPDRMAQRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|67925131|ref|ZP_00518505.1| Cell division transporter substrate-binding protein FtsY
           [Crocosphaera watsonii WH 8501]
 gi|67853025|gb|EAM48410.1| Cell division transporter substrate-binding protein FtsY
           [Crocosphaera watsonii WH 8501]
          Length = 457

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 108/315 (34%), Positives = 183/315 (58%), Gaps = 5/315 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +   V+ E ++W+++L +G   + L L   +  I+    L++    E+E LL+++D G+ 
Sbjct: 141 APDDVSQEEINWLKRLRQGLGKSRLGLVNQLKSIVGQGPLNEDAVMEIEALLLQADTGLE 200

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRP---HVILVV 117
               I+  L  K   + +  ++ L  +  ++ ++L  PL K  N  F+      ++ L+ 
Sbjct: 201 ATDYIISTLQNKLLEEALPPEQALEYLKSILREILDRPLQKVVNPGFAPEKDVLNIWLLT 260

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT IGKLS     +G   ++AA DTFR+AA+ Q+++W +RT+   + +    +
Sbjct: 261 GVNGAGKTTTIGKLSHLAQQSGYNCIIAAADTFRAAAVQQVQVWGERTNTPVIANPGKNT 320

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++    AQA++ D+L++DTAGRL N   LMA + K+ R++ +    A    L V
Sbjct: 321 DPAAVVFDGISAAQARQADLLLVDTAGRLQNKKNLMAELAKIRRIIDKKAEKAQVESLLV 380

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN LRQ ++F   A  +G+++TK+DG+A+GG  + +     +P+ F+GVGEGI 
Sbjct: 381 LDATLGQNGLRQAQVFSEAANLSGVVLTKLDGSAKGGVALAVAKQLDLPIRFIGVGEGIE 440

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF + +F   + 
Sbjct: 441 DLRPFSSYEFVEALL 455


>gi|213408098|ref|XP_002174820.1| signal recognition particle protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212002867|gb|EEB08527.1| signal recognition particle protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 537

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 142/303 (46%), Gaps = 14/303 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+    +L   + ++  S  ++D V     + +   L+ SD+ V + Q++   +  +   
Sbjct: 3   FSDLGRRLNAALGELSKSDVVNDEVVDGVLKSICKALLESDVNVRLVQELRGNIKKRINV 62

Query: 77  KDVSV-QRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLS 132
           K +         V + +   L  L  P    F     RP+VI+ VG+ G GKTT   KL+
Sbjct: 63  KSLPAGPNGKRVVQKAVFDELCDLLDPKTQAFTPKKGRPNVIMFVGLQGSGKTTTCTKLA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G K  L A DTFR+ A DQLK  A +    F  S   +D   +A     + + +
Sbjct: 123 LYYQRRGFKSCLVAADTFRAGAFDQLKQNALKARIPFYGSYTEADPVVVAQTGVDKFKKE 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           + D++I+DT+GR      L   + ++   +       P+  + VLDA+ GQ A  Q   F
Sbjct: 183 RFDIIIVDTSGRHQQEKELFNEMIEISEAV------RPNQTIMVLDASIGQAAESQSRAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              A    +I+TK+DG A+GGG +  V   K P+ F+G GE INDLE F  + F + + G
Sbjct: 237 KESANFGAVIVTKLDGHAKGGGALSAVAATKTPIIFIGTGEHINDLERFSPRSFISKLLG 296

Query: 313 CLD 315
             D
Sbjct: 297 MGD 299


>gi|259417053|ref|ZP_05740972.1| signal recognition particle protein [Silicibacter sp. TrichCH4B]
 gi|259345959|gb|EEW57773.1| signal recognition particle protein [Silicibacter sp. TrichCH4B]
          Length = 519

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  V+++  +   
Sbjct: 7   FENLSERLSGVFDRLTKQGALSEDDVKTALREVRVALLEADVSLPVARDFVKKVQEQATG 66

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +   L     P        P  IL+VG+ G GKTT  GKL
Sbjct: 67  QAVTKSVTPGQQVVKIVHDALVDTLRGEDDPGALKIDSPPAPILMVGLQGSGKTTTTGKL 126

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G KV+LA+ D +R AA+DQL +   +   D +    G     +A  A +QA 
Sbjct: 127 AKRLKEKEGKKVLLASLDVYRPAAMDQLAVLGTQIGVDTLPIVKGQTPVDIAKRAKQQAA 186

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  + +L      M  V    D  +P   L V+D  TGQ A+   E
Sbjct: 187 LGGYDVYMLDTAGRLQIDEVL------MKEVEDVRDVVSPRETLLVVDGLTGQVAVEVAE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F     +  I
Sbjct: 241 EFDNKIGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDAIETFEPDRIAGRI 300

Query: 311 TGCLD 315
            G  D
Sbjct: 301 LGMGD 305


>gi|89900462|ref|YP_522933.1| signal recognition particle-docking protein FtsY [Rhodoferax
           ferrireducens T118]
 gi|89345199|gb|ABD69402.1| signal recognition particle-docking protein FtsY [Rhodoferax
           ferrireducens T118]
          Length = 364

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 123/314 (39%), Positives = 180/314 (57%), Gaps = 12/314 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V  E   W+ KL  G   T       I+ + S  R+D+ + EELE  L+ +D GVA  Q 
Sbjct: 54  VPPERQKWLDKLKAGLGKT----ANSISGVFSGTRIDEALYEELEGALLMADTGVAATQY 109

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++L  K     ++    L ++       L+   +       H+P VI+V GVNG GKT
Sbjct: 110 LLDDLRRKVKESGITHPVALKNILVASLTELLLPLEKPLVIGQHKPTVIMVTGVNGAGKT 169

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF--------VCSEIGSD 177
           T IGKL++ ++  G  V+LAA DTFR+AA +QL +WA R             + S+ G D
Sbjct: 170 TSIGKLTQHLAMHGASVLLAAADTFRAAAREQLGVWATRAGTSTDTPDHSVEIISQQGGD 229

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA++++A    +A+  DV+++DTAGRL     LM  + K+ RV+++ D  APH +L V+
Sbjct: 230 PAAVSFDAVSAGKARGKDVVLVDTAGRLPTQLHLMEELRKIKRVVQKADATAPHEILLVI 289

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D  TGQNAL QV+ F    G TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + D
Sbjct: 290 DGNTGQNALTQVKAFDEALGLTGLIVTKLDGTAKGGVLAAIARERPVPVYFIGVGEQLED 349

Query: 298 LEPFVAKDFSAVIT 311
           LE F A++F+  + 
Sbjct: 350 LETFNAREFAQALL 363


>gi|242399400|ref|YP_002994824.1| Signal recognition 54 kDa protein [Thermococcus sibiricus MM 739]
 gi|242265793|gb|ACS90475.1| Signal recognition 54 kDa protein [Thermococcus sibiricus MM 739]
          Length = 453

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 143/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L   +  +  +  +D+     V  +++  LI SD+ V +   + +++  +   
Sbjct: 8   LDKLGQSLNNALKKLARASTVDEALVRDVVRDIQRALITSDVNVRLVLDLTKKIEKRALE 67

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +         + ++  V E +   L   +KP       +P V+L VG+ G GKTT + KL
Sbjct: 68  EKPPAGVSKKEHIVKIVYEELTNFLGKEAKPVEIKA--KPTVLLTVGIQGSGKTTSVAKL 125

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S+     G KV +   DT+R  A  QLK   +    +   +    +A  LA E  +  + 
Sbjct: 126 SRYFQKHGYKVGVVCSDTWRPGAYQQLKQLIEPYGIEVFGNPEEKNAIKLAKEGVEYFKK 185

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VDV+I+D+AGR      L+  + ++   +       PH V+ ++D T GQ A  Q   
Sbjct: 186 KGVDVIIVDSAGRHKEEKGLIEEMRQISNTIN------PHEVILIIDGTIGQQAYNQALA 239

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG+A+GGG +  VV    P+ F+GVGE I+DLEPF  K F + + 
Sbjct: 240 FKEATPIGSIIVTKLDGSAKGGGALSAVVATGAPIKFIGVGEKIDDLEPFDPKRFVSRLL 299

Query: 312 GCLD 315
           G  D
Sbjct: 300 GLGD 303


>gi|298385678|ref|ZP_06995236.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           1_1_14]
 gi|298261819|gb|EFI04685.1| signal recognition particle-docking protein FtsY [Bacteroides sp.
           1_1_14]
          Length = 319

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 122/312 (39%), Positives = 184/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I++ +  +  A K V+ Q + + + + I  +L   +      F+     +P+V++VVGVN
Sbjct: 65  IIKRIEKRAAADKYVNTQELNHILRDEIAALLTENNSDDVADFDVPIEKKPYVMMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGTDPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P+AP  VL VLD +
Sbjct: 185 VAFDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F   +F   + G
Sbjct: 305 FRKNEFVDSLFG 316


>gi|154505346|ref|ZP_02042084.1| hypothetical protein RUMGNA_02861 [Ruminococcus gnavus ATCC 29149]
 gi|153794389|gb|EDN76809.1| hypothetical protein RUMGNA_02861 [Ruminococcus gnavus ATCC 29149]
          Length = 316

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 123/306 (40%), Positives = 177/306 (57%), Gaps = 4/306 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            E   + R+L  G   T   +  G+  I     ++D+   EELE+ LI  D+GV    +I
Sbjct: 2   EEKKGFFRRLVSGLTKTRDNIVSGMDSIFHGFSKIDEDFYEELEETLIMGDLGVHTTTEI 61

Query: 67  VEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E+L  K   + +         + + I + L        ++F  R  V+ V+GVNGVGKT
Sbjct: 62  IEDLRRKVKEQHIKEPAACRQLLIDSIKEQLD--VGETAYEFEERQSVVFVIGVNGVGKT 119

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K  +   +V+LAA DTFR+AA +QLK WA+R   + +  + G+D A++ ++A
Sbjct: 120 TTIGKLAGKFREQHKRVILAAADTFRAAAGEQLKEWANRAEVEMIGGQEGADPASVVFDA 179

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+K D+L+ DTAGRLHN   LM  + K+ RV+ R    A    L VLDATTGQNA
Sbjct: 180 VAAARARKADILLCDTAGRLHNKKNLMEELKKINRVIDREYQEAYRETLVVLDATTGQNA 239

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q   F+ VA  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I+DL+ F A +
Sbjct: 240 LAQAREFNEVADITGVILTKMDGTAKGGIAVAIQSELGIPVKYIGVGESIDDLQKFDADE 299

Query: 306 FSAVIT 311
           F   + 
Sbjct: 300 FVNALF 305


>gi|294618512|ref|ZP_06698074.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1679]
 gi|291595212|gb|EFF26543.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1679]
          Length = 332

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 122/311 (39%), Positives = 179/311 (57%), Gaps = 11/311 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           +  +E +    K  KG   T     E + ++ ++ R +D+   EELE+ LI +D+G   A
Sbjct: 14  EEKTEEVEVQEKYDKGLEKTRKTFGERMNELFANFRTVDEDFFEELEETLIGADVGFETA 73

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-------SHRPHVILV 116
            +I E L  +   ++        +V   I + L+ L +    +             VIL 
Sbjct: 74  IRITEALRQEVKLRNAKKS---AEVQNAIIEKLVDLYEAEGINEVNELNIQEDGLTVILF 130

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ +  + G KV++AA DTFR+ AIDQL +W +R   + V    G 
Sbjct: 131 VGVNGVGKTTSIGKLAHQFKNEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGG 190

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A ++A+ ++ DVL++DTAGRL N   LM  + K+ RV++R  P AP   L V
Sbjct: 191 DPAAVVFDALERAKIEQADVLLVDTAGRLQNKVNLMNELEKIKRVIQRELPEAPQETLLV 250

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q + F      TGL++TK+DGTA+GG ++ I     +PV  +G+GEGI+
Sbjct: 251 LDATTGQNAMVQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELHLPVKLVGLGEGID 310

Query: 297 DLEPFVAKDFS 307
           DLEPF   DF 
Sbjct: 311 DLEPFDPNDFV 321


>gi|110763770|ref|XP_624497.2| PREDICTED: signal recognition particle 54 kDa protein-like [Apis
           mellifera]
          Length = 498

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELL----T 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +K+ E +      
Sbjct: 3   LADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIRLVKKLRENVRLVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  K +      RP++I+ VG+ G GKTT   KL
Sbjct: 63  DDMAGGLNKRRMIQSAVFKELVKLIDPGVKAYQ-PIKGRPNIIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +  +  + 
Sbjct: 122 AYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVTIAQDGVEMFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DAT GQ    Q + 
Sbjct: 182 EGYEIIIVDTSGRHKQEESLFEEMLQVANAIQ------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + PV F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFVGTGEHIDDLEPFKTKPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|71082964|ref|YP_265683.1| cell division particle [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762612|ref|ZP_01264577.1| cell division particle [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062077|gb|AAZ21080.1| cell division particle [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718414|gb|EAS85064.1| cell division particle [Candidatus Pelagibacter ubique HTCC1002]
          Length = 305

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 116/300 (38%), Positives = 181/300 (60%), Gaps = 1/300 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +    K   GF  ++     G+ DII  + +DD   +++E+ LI+SD+G+  A++I + +
Sbjct: 1   MGIFDKFKIGFKKSASTFTSGLRDIIVKKEIDDKTLDQIEEYLIQSDVGLVAAEEIKKII 60

Query: 71  LTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             ++      +   +   +   I  ++ PL     ++   + + +LV GVNGVGKTT IG
Sbjct: 61  AQEKIDPKKDIMHEVNLILRNYIVTLMKPLENENFFNKKEKLNAVLVSGVNGVGKTTTIG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+ K +   G KVM +A DTFR+AAI+QL+ WA++       S  GSD A++AY+A ++A
Sbjct: 121 KVGKILKSNGNKVMFSACDTFRAAAIEQLESWANKIDVQITKSTQGSDPASVAYKAIEEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                + ++IDTAGRL N   LM    K+  V K++DP APH V+ VLDAT+GQN + QV
Sbjct: 181 LKNDFNHVLIDTAGRLQNKKNLMEEYKKIAHVTKKIDPDAPHDVILVLDATSGQNVISQV 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+ +   TGLIMTK+DGTA+GG L+ +   +K+P+  LG+GE  +DL+ F A+ F+  
Sbjct: 241 EEFNKIIPLTGLIMTKLDGTAKGGILLALAKKYKLPIIALGLGEKEDDLQIFNAEKFAEA 300


>gi|332638235|ref|ZP_08417098.1| signal recognition particle-docking protein FtsY [Weissella cibaria
           KACC 11862]
          Length = 406

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 179/312 (57%), Gaps = 11/312 (3%)

Query: 17  LTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L +G   T     E     +++ R +D+   EELE+ LI +D+G   A ++ +EL  +  
Sbjct: 98  LDEGLTKTRKTWSERWNAFMANFRSVDEDFFEELEETLIGADVGAQTALQLTDELRNEVK 157

Query: 76  AKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFS-----HRPHVILVVGVNGVGKTTVI 128
            ++    +   D+S +I   L+    S+  N D S       P VIL VGVNGVGKTT I
Sbjct: 158 LQN---AKSKADISRVIIDKLVEHYRSQGVNEDASMHFAPEGPTVILFVGVNGVGKTTTI 214

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK+S +    G +V+LAA DTFR+ A  QL+ W +R     V     +D A++ Y+  K 
Sbjct: 215 GKMSARYKAEGKQVVLAAADTFRAGATQQLQAWGERNGIPVVAGAANADPASVVYDGVKT 274

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A     D+L +DTAGRL NN  LM  + KM R++ R  P+ P  VL  LDATTGQNAL+Q
Sbjct: 275 AIETNADILFVDTAGRLQNNVNLMQELAKMKRIITRELPNEPQEVLLALDATTGQNALQQ 334

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F      TG+++TK+DGTA+GG ++PI     +PV ++G+GE + DL+PF A DF+ 
Sbjct: 335 ARLFKDSTDVTGIVLTKLDGTAKGGIILPIRNELHLPVKWVGLGEQVGDLQPFDADDFAK 394

Query: 309 VITGCLDYGEEK 320
            + G L  G++K
Sbjct: 395 SLFGSLLIGDDK 406


>gi|325914818|ref|ZP_08177153.1| signal recognition particle subunit FFH/SRP54 (srp54) [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325538909|gb|EGD10570.1| signal recognition particle subunit FFH/SRP54 (srp54) [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 446

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/294 (28%), Positives = 143/294 (48%), Gaps = 17/294 (5%)

Query: 32  ITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQ 82
           +  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q
Sbjct: 1   MERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQ 60

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK- 141
            ++  V + +  ++   +   N +    P +IL+ G+ G GKTT +GKL+K + +   K 
Sbjct: 61  ALIKIVRDELTAVMGAAAADLNLNVPA-PAIILMAGLQGAGKTTTVGKLAKHLKEKRKKK 119

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           VM+ + D +R AAI+QLK  A++    F  S+       +   A   A+    DVL++DT
Sbjct: 120 VMVVSADVYRPAAIEQLKTLAEQVGVLFFPSDASQKPVDIVRAAISDARKSFADVLLVDT 179

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL  +  +M  I  +   +       P   L V+DA TGQ+A    + F      TG+
Sbjct: 180 AGRLAIDQAMMDEIKALHAAVN------PTETLFVVDAMTGQDAANTAKAFGEALPLTGV 233

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++TK DG ARGG  + +      P+ F+G GE  + L+ F     ++ I    D
Sbjct: 234 VLTKTDGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVFHPDRVASRILDMGD 287


>gi|91204843|ref|YP_537198.1| Signal recognition particle-docking protein FtsY [Rickettsia bellii
           RML369-C]
 gi|157826414|ref|YP_001495478.1| Signal recognition particle-docking protein FtsY [Rickettsia bellii
           OSU 85-389]
 gi|122426142|sp|Q1RKK5|FTSY_RICBR RecName: Full=Cell division protein ftsY homolog
 gi|91068387|gb|ABE04109.1| Signal recognition particle-docking protein FtsY [Rickettsia bellii
           RML369-C]
 gi|157801718|gb|ABV78441.1| Signal recognition particle-docking protein FtsY [Rickettsia bellii
           OSU 85-389]
          Length = 303

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 123/303 (40%), Positives = 188/303 (62%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S   KL +G + TS K+  GI  I   ++LD    EELE+LLI +D+G  VA KI+E+ 
Sbjct: 2   ISIFSKLKQGLSKTSGKISAGIDKIFYKKKLDAETLEELEELLISTDMGSLVAAKIIEDF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + ++ K+V    +   ++ LI + L+    PF  +  ++ +V+LV GVNG GKTT IGK
Sbjct: 62  KSLKFDKEVETTEIKETLANLIEQQLLESEIPFTLN-ENKLNVVLVCGVNGAGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G KV +AA DTFR+AA++QL  W  R  A  +  E  +D A++AY A +++ 
Sbjct: 121 LAAMYGMQGKKVAVAACDTFRAAAVNQLDSWVTRAKALLITGEEAADPASVAYRAVEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D+L IDTAGRLHN   LM  + K+++V+K++D + P   + V+DA TGQN   QVE
Sbjct: 181 KQDIDILFIDTAGRLHNKKNLMDELTKIVKVIKKVDENLPTHSVLVIDAITGQNTYNQVE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I DL+ F   DF+  +
Sbjct: 241 HFNDATNLTGLIVTKLDGSAKAGVIVGVVQRFNLPIYFIGIGEQIEDLKIFNRHDFAKSL 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|289522289|ref|ZP_06439143.1| signal recognition particle protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289504125|gb|EFD25289.1| signal recognition particle protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 445

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 98/307 (31%), Positives = 154/307 (50%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L+   + +    RL +        E+   L+ +D+   +A+ +VE +  +   
Sbjct: 2   FDSLKERLEGIFSKLRGKGRLTEEDINDALREVRRALLEADVNYKIAKDLVERIKERCLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V   V E +  ++    +  N+     P V ++VG+ G GKTT   KL
Sbjct: 62  QEVLSSITPAQQVYAVVYEELCNLMGGKKERLNF-APKPPSVFMLVGLQGSGKTTTAVKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--GSDAAALAYEAFKQA 189
           + K+SD+  K M+ A D  R AA+ QLK+ AD+    F   E     +   +  +A   A
Sbjct: 121 ALKISDS-HKPMVVACDLRRPAAVKQLKVLADKARIPFFGPEEAGSGNVMDVTRKALSYA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A  +DV+I DTAGRLH +  LMA + +M ++L       P  VL V+D+ TGQ  +   
Sbjct: 180 DAHLIDVIIFDTAGRLHIDDDLMAELEQMHKLLD------PSEVLLVIDSMTGQEGVNVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F   AG TG+++TK+DG ARGG  + +     +P+  +GVGE + DLE F A   +  
Sbjct: 234 EAFKEKAGITGVVLTKLDGDARGGAALAVKAATGVPIKLVGVGEHLEDLEEFDATRMAQR 293

Query: 310 ITGCLDY 316
           I G  D 
Sbjct: 294 ILGMGDM 300


>gi|71275946|ref|ZP_00652229.1| Signal recognition particle protein [Xylella fastidiosa Dixon]
 gi|71902277|ref|ZP_00684273.1| Signal recognition particle protein [Xylella fastidiosa Ann-1]
 gi|170729299|ref|YP_001774732.1| signal recognition particle protein [Xylella fastidiosa M12]
 gi|71163323|gb|EAO13042.1| Signal recognition particle protein [Xylella fastidiosa Dixon]
 gi|71727973|gb|EAO30192.1| Signal recognition particle protein [Xylella fastidiosa Ann-1]
 gi|167964092|gb|ACA11102.1| signal recognition particle protein [Xylella fastidiosa M12]
          Length = 455

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 155/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L   I  +    RL ++ +RE   E+   L+ +D+ ++V Q ++E +  +   
Sbjct: 2   FESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALSVVQALIERIKIRALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V + +  ++   +   N +    P VIL+ G+ G GKT+++GKL
Sbjct: 62  QEVLKSLTPGQALIKVVRDELAAVMGDSASELNLNVPA-PAVILLAGLQGAGKTSMVGKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K + + + D +R AAI+QL+I +++ +     S +G +   +   A   A+
Sbjct: 121 AKYLKEKRKKKVLVVSADVYRPAAIEQLRILSEQVNVLCFPSSVGQNPVDIVRAAIADAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDVL++DTAGRL  +  +M  I  +       D   P   L V+D+ TGQ+A    +
Sbjct: 181 KSFVDVLLVDTAGRLAIDQGMMDEIKALH------DTLVPVETLFVVDSMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG ARGGG + +      P+ F+G GE ++DL+ F     +  I
Sbjct: 235 AFSEALPLTGVILTKTDGDARGGGALSVRYITGRPIKFVGTGEKVDDLDVFHPDRAAKRI 294

Query: 311 TGCLD 315
               D
Sbjct: 295 LDMGD 299


>gi|320535868|ref|ZP_08035944.1| signal recognition particle protein [Treponema phagedenis F0421]
 gi|320147281|gb|EFW38821.1| signal recognition particle protein [Treponema phagedenis F0421]
          Length = 446

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 144/308 (46%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            + K+T  F+    K+    T  I+ + ++D V EE++  L+ +D+ + V ++ +   + 
Sbjct: 1   MLEKITDTFSGIIRKIGGKAT--ITEKNIEDAV-EEIKTALLDADVNLRVVRRFINATIE 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +   + V       Q+ +  V + I   L    +           VIL +G+ G GKTT 
Sbjct: 58  EAKGETVLKSVNPGQQFVKIVHDKILSFLGDDKQDLQLKGPDTQSVILFLGLQGSGKTTS 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+ ++   G K +L A D  R AAI+QL +   +        E   +A  +A     
Sbjct: 118 AAKLAARLKKEGRKPLLVACDLVRPAAIEQLSVLGTQIEVPVYK-EESKNAVQVAKNGLA 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    D +I+DTAGRL  ++ +M  I  + + +       P   L V D+ TGQ+A+ 
Sbjct: 177 FAKKNFYDTVIVDTAGRLQIDAEMMNEIIAIKKAIN------PVETLLVADSMTGQSAVD 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F    G +G+I+TK D   RGG  + +      P+ F+G GE I DLEPF  +  +
Sbjct: 231 IAKEFDGSVGLSGVILTKFDSDTRGGAALSLKTITGKPILFIGTGEKIEDLEPFYPERIA 290

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 291 SRILGMGD 298


>gi|308173560|ref|YP_003920265.1| signal recognition particle-like (SRP) GTPase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606424|emb|CBI42795.1| signal recognition particle-like (SRP) GTPase [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553507|gb|AEB23999.1| signal recognition particle protein [Bacillus amyloliquefaciens
           TA208]
 gi|328911701|gb|AEB63297.1| signal recognition particle-like (SRP) GTPase [Bacillus
           amyloliquefaciens LL3]
          Length = 446

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 148/306 (48%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ I+ I    ++ +     +  E+   L+ +D+   V +  V+++  +  
Sbjct: 2   AFEGLADRLQKTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +DV       Q+V+  V E + +++              P VI++VG+ G GKTT  GK
Sbjct: 62  GQDVMKSLTPGQQVIKVVKEELTELMGGEESKIAV-AKRPPTVIMMVGLQGAGKTTTTGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +      K +L A D +R AAI QL+    +                +A +A ++A
Sbjct: 121 LANLLRKKHNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIARQAIEKA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D +I+DTAGRLH +  LM  +  +  V        P  +  V+D+ TGQ+A+   
Sbjct: 181 KEEHHDYVILDTAGRLHIDHELMDELSGVKEVAN------PEEIFLVVDSMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG+++TK+DG  RGG  + I    + P+ F G+GE ++ LE F  +  ++ 
Sbjct: 235 KSFNDQLGLTGVVLTKLDGDTRGGAALSIRAVTETPIKFAGMGEKLDALEAFHPERMASR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|224369892|ref|YP_002604056.1| Srp [Desulfobacterium autotrophicum HRM2]
 gi|223692609|gb|ACN15892.1| Srp [Desulfobacterium autotrophicum HRM2]
          Length = 320

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 124/302 (41%), Positives = 185/302 (61%), Gaps = 4/302 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
             + +  +G + T   L   I D+ S +R +DD + EE+E+ LI +D+GV +  K++E +
Sbjct: 20  GILGRFKQGLSRTRDILFTDIDDLFSKKRVIDDTLLEEIEESLIMADLGVDLCLKVMENV 79

Query: 71  LTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              R +K +S    L D+    I  +              +P VI+VVGVNG GKTT +G
Sbjct: 80  --SRKSKKLSTANELKDLLKAEIQALFPGEPSAPEPTAVVKPRVIMVVGVNGTGKTTTLG 137

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K ++ G KV++AA DTFR+AAI+Q+  WA R +   V    G+D AA+A++  + A
Sbjct: 138 KLAMKFTNEGQKVLIAAADTFRAAAIEQVSEWARRANVGIVKHRDGADPAAVAFDGVEAA 197

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+ +DVL+IDTAGRLH    LM  + K+ R + +  P APH VL VLDATTGQNA+ Q 
Sbjct: 198 IARGIDVLLIDTAGRLHTQKNLMEELKKIKRTIAKRLPGAPHEVLMVLDATTGQNAISQA 257

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F+   G T L +TK+DGTA+GG  + I  T +IP+ ++G+GEGINDL+ F ++ F   
Sbjct: 258 KLFNEAVGVTALALTKLDGTAKGGIAVSISGTMEIPLKYIGLGEGINDLQEFNSQLFINA 317

Query: 310 IT 311
           + 
Sbjct: 318 LF 319


>gi|29346324|ref|NP_809827.1| recognition particle-docking protein FtsY [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338219|gb|AAO76021.1| recognition particle-docking protein FtsY [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 319

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 122/312 (39%), Positives = 184/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I++ +  +  A K V+ Q + + + + I  +L   +      F+     +P+V++VVGVN
Sbjct: 65  IIKRIEKRAAADKYVNTQELNHILRDEIAALLTENNSDDVADFDVPIKKKPYVMMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P+AP  VL VLD +
Sbjct: 185 VAFDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F   +F   + G
Sbjct: 305 FRKNEFVDSLFG 316


>gi|318042977|ref|ZP_07974933.1| signal recognition particle-docking protein FtsY [Synechococcus sp.
           CB0101]
          Length = 411

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/312 (33%), Positives = 171/312 (54%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            ++ E + W+ +L +G   T       + D +    L   V ++LE LL+R+D+GV    
Sbjct: 98  DISLEEIDWLGRLRRGMEKTRRGFVTQLLDNLGDDPLTPEVLDDLESLLLRADVGVQATD 157

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVN 120
           +++E L  +   + V     +  + E +  +L                 R +V L+VGVN
Sbjct: 158 QVLEALRKRLNEEVVEPAEGIRFLKEQLKGLLDAPIQASGAQLLAPERGRLNVWLMVGVN 217

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           GVGKTT +GKL+     +G   ++AA DTFR+AA+ Q+ +W +R+    V +    +D A
Sbjct: 218 GVGKTTTLGKLANLAVRSGYSCLIAAADTFRAAAVQQVAVWGERSGVTVVSNPSANADPA 277

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   AQAK  D++++DTAGRL     LM  + K+ R++ +L P A    L VLDA
Sbjct: 278 AVVFDAIGAAQAKGTDLVLVDTAGRLQTKHNLMEELSKVRRIVDKLAPDALVQSLLVLDA 337

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN L+Q   F   AG TG+++TK+DG++RGG  + +     +P+ F+G GEGI DL 
Sbjct: 338 SQGQNGLKQAMAFAQAAGLTGVVITKLDGSSRGGVALAVASEAGLPIRFIGAGEGIRDLR 397

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 398 PFNSFEFVEALL 409


>gi|253568254|ref|ZP_04845665.1| recognition particle-docking protein FtsY [Bacteroides sp. 1_1_6]
 gi|251842327|gb|EES70407.1| recognition particle-docking protein FtsY [Bacteroides sp. 1_1_6]
          Length = 319

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 122/312 (39%), Positives = 184/312 (58%), Gaps = 11/312 (3%)

Query: 12  SWIRK-----LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           S+  K     L KG + T   +   I   ++ + ++DD V + LE++LI SD+GV     
Sbjct: 5   SFFSKEKKETLDKGLSKTKESVFSKIARAVAGKSKVDDEVLDNLEEVLITSDVGVETTLN 64

Query: 66  IVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLSKP----FNWDFSHRPHVILVVGVN 120
           I++ +  +  A K V+ Q + + + + I  +L   +      F+     +P+V++VVGVN
Sbjct: 65  IIKRIEKRAAADKYVNTQELNHILRDEIAALLTENNSDDVADFDVPIEKKPYVMMVVGVN 124

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+ +   AG  V L A DTFR+AA++QL IW +R     V  ++G+D A+
Sbjct: 125 GVGKTTTIGKLAYQFKKAGKSVYLGAADTFRAAAVEQLMIWGERVGVPVVKQKMGADPAS 184

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++    A A   DV+IIDTAGRLHN   LM  + K+  V+K++ P+AP  VL VLD +
Sbjct: 185 VAFDTLSSAVANNADVVIIDTAGRLHNKVGLMNELTKIKNVMKKVVPNAPDEVLLVLDGS 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      T + +TK+DGTA+GG +I I    KIPV ++G+GEG+ DL+ 
Sbjct: 245 TGQNAFEQAKQFTLATEVTAMAITKLDGTAKGGVVIGISDQFKIPVKYIGLGEGMEDLQV 304

Query: 301 FVAKDFSAVITG 312
           F   +F   + G
Sbjct: 305 FRKNEFVDSLFG 316


>gi|260429470|ref|ZP_05783447.1| signal recognition particle protein [Citreicella sp. SE45]
 gi|260420093|gb|EEX13346.1| signal recognition particle protein [Citreicella sp. SE45]
          Length = 507

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA++ ++ +  K   
Sbjct: 2   FENLSERLGGVFDRLTKQGALSEDDVRTALREVRVALLEADVSLPVARQFIKAVEKKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V+      Q+V+  V + +  +L    +P        P  IL+VG+ G GKTT   KL
Sbjct: 62  AAVTKSVTPGQQVVKIVHDELIAVLAGEGEPGALRIDSPPAPILMVGLQGGGKTTTTAKL 121

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++ +   K + +A+ D  R AA++QL+I   +   D +    G D  A+A  A  QA 
Sbjct: 122 ARRLKERDHKKVLMASLDVNRPAAMEQLEILGKQIGVDTLPIVKGEDPVAIAKRAKTQAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  +  LMA       V    D   P   L V+D  TGQ+A+   E
Sbjct: 182 LGGYDVYMLDTAGRLSIDEELMAQ------VEAVRDVANPRETLLVVDGLTGQDAVHTAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F +  G TG+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F     +  I
Sbjct: 236 NFDSRIGITGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGLGEKMDALETFEPDRVAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|308177252|ref|YP_003916658.1| signal recognition particle-docking protein FtsY [Arthrobacter
           arilaitensis Re117]
 gi|307744715|emb|CBT75687.1| signal recognition particle-docking protein FtsY [Arthrobacter
           arilaitensis Re117]
          Length = 393

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 179/311 (57%), Gaps = 6/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            V     S + +L      ++    +G+  ++S   +D+ V EE+E+ L+ +D+G   A 
Sbjct: 83  DVPEPVQSRLARLRARLTKSNNMFSKGLLALLSQDSIDEDVWEEIEENLLMADLGTEPAL 142

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNG 121
           ++V+ L  +   +  +    +   + E + K++ P             RP +I+VVGVNG
Sbjct: 143 ELVDALRERVKIEGSTDPARVKAMLREELLKLVDPTMDRSYLPAPHPDRPSIIMVVGVNG 202

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAA 180
           VGKTT IGKL++ +      V+L A DTFR+AA +QL  W DR     V S+I   D A+
Sbjct: 203 VGKTTTIGKLARVLVAEDKDVLLGAADTFRAAAAEQLATWGDRVGVPTVRSDIDGADPAS 262

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A+EA      ++VD+++IDTAGRL N   LM  +GK+ RV+++    A   VL VLDAT
Sbjct: 263 VAFEAVSAGIDQEVDIVMIDTAGRLQNKVGLMDELGKIKRVVEKK--AAIDEVLLVLDAT 320

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN L+Q ++F  V   +G+++TK+DGTA+GG ++ I     +PV  +G+GEG +DL P
Sbjct: 321 TGQNGLQQAKVFSEVVNVSGIVLTKLDGTAKGGIVVAIQRQLGVPVKLVGLGEGPDDLAP 380

Query: 301 FVAKDFSAVIT 311
           F A+DF   + 
Sbjct: 381 FNAEDFVDALL 391


>gi|19745687|ref|NP_606823.1| signal recognition particle (docking protein) [Streptococcus
           pyogenes MGAS8232]
 gi|19747821|gb|AAL97322.1| putative signal recognition particle (docking protein)
           [Streptococcus pyogenes MGAS8232]
          Length = 516

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 119/302 (39%), Positives = 173/302 (57%), Gaps = 7/302 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   EELE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRTGFSARLNSFFANFRRVDEEFFEELEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129
              ++      L  V  ++ K++    K   ++ +        V+L VGVNGVGKTT IG
Sbjct: 273 AKLENAKKPDALKRV--IVEKLVGIYEKDGRYNEAINYQDGLTVMLFVGVNGVGKTTSIG 330

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A
Sbjct: 331 KLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGMEKA 390

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            AK VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q 
Sbjct: 391 VAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLPDAPHETLLALDASTGQNALSQA 450

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   
Sbjct: 451 KEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKVDDIGEFHSEDFMKG 510

Query: 310 IT 311
           + 
Sbjct: 511 LL 512


>gi|304390863|ref|ZP_07372815.1| cell division protein FtsY [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304325746|gb|EFL92992.1| cell division protein FtsY [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 596

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 177/312 (56%), Gaps = 10/312 (3%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
                S +R+L +  A    K    I +++S+  L++   E +ED L+ +D+GV    ++
Sbjct: 286 PESKTSRLRRLKERLAG-KGKFGRAILNVLSNADLEESDWEAIEDELLAADLGVEPTVEL 344

Query: 67  VEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSK-----PFNWDFSHRPHVILVVGVN 120
           + +L  K+          +  +++ ++  ML   ++         D   +   IL+VGVN
Sbjct: 345 IGKLKVKQKVAGEKDATQVRRMAKRMLTDMLDRKAERRLNLEVPEDSPTQTAGILLVGVN 404

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           G GKTT +GKL++ +      V+L A DTFR+AA +QL+ W DR     V +E    D A
Sbjct: 405 GGGKTTTVGKLARLLVAERKTVVLGAADTFRAAAGEQLQTWGDRVGVPVVRAEKDQADPA 464

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A K A+    DV++IDTAGRL N   LM  +GK+ RV ++  P     VL V+DA
Sbjct: 465 SVAFDAAKAAREAGSDVVVIDTAGRLQNKVGLMDELGKIKRVAEKQVP--ITEVLLVIDA 522

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q ++F    G TG+++TK+DG+A+GG ++P+     IPV  +G+GEG +DL 
Sbjct: 523 TTGQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVIVPLQRELGIPVKLVGLGEGPDDLA 582

Query: 300 PFVAKDFSAVIT 311
           PFV  DF+  + 
Sbjct: 583 PFVPGDFADALL 594


>gi|227872401|ref|ZP_03990748.1| signal recognition particle-docking protein FtsY [Oribacterium
           sinus F0268]
 gi|227841761|gb|EEJ52044.1| signal recognition particle-docking protein FtsY [Oribacterium
           sinus F0268]
          Length = 291

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 110/287 (38%), Positives = 169/287 (58%), Gaps = 6/287 (2%)

Query: 28  LKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
             + + +I  S  + D+   EELE+ +I SD+  +   +I++ +  +   + V++ R   
Sbjct: 5   FTKILNNIFQSNEVADEAFYEELEEAMILSDVSYSSCMRIIDAVKHEANQRGVNLTR--- 61

Query: 87  DVSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           DV +++   ++ L   +   + F     +I V+GVNGVGKTT IGKL+  +   G KV+L
Sbjct: 62  DVQKILKDYILDLMMVEEGYYAFEQEKSIISVIGVNGVGKTTSIGKLAYHLKKKGKKVIL 121

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+ AI+QL  W +R   D +  + GSD AA+ ++A +  +AK  DVLIIDTAGR
Sbjct: 122 AAADTFRAGAIEQLVEWGNRVGVDVIHQKEGSDPAAVVFDALQSFKAKNADVLIIDTAGR 181

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LHN   LM  +GK+ R++ R         L VLDATTGQNA+ Q ++F   +  TG+I++
Sbjct: 182 LHNKKNLMQELGKINRIIDREFAEGYRETLVVLDATTGQNAMSQAKLFKECSQVTGVILS 241

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           KMD TA+GG  + I     +PV ++G GE + +L+ F AK +   I 
Sbjct: 242 KMDSTAKGGMALSIQAELGLPVKYMGTGEKVENLQRFDAKRYVEDIF 288


>gi|72161062|ref|YP_288719.1| signal recognition particle-docking protein FtsY [Thermobifida
           fusca YX]
 gi|71914794|gb|AAZ54696.1| signal recognition particle-docking protein FtsY [Thermobifida
           fusca YX]
          Length = 393

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 179/313 (57%), Gaps = 11/313 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++   S   + +L    A +      G+ ++++S +LD+   EE+ED LI +D+GV  A 
Sbjct: 83  ELPPPSAGRMVRLRARLAKSQNVFGRGLLNLLASDKLDEDTWEEIEDTLITADVGVTSAT 142

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF------NWDFSHRPHVILVVG 118
           +I E L T+     V   R + +V  L+ + L+    P             RP VI+VVG
Sbjct: 143 QITEGLRTRVR---VLGTRSVDEVRALLREELLAHINPKLDRTVRTKGPGERPAVIMVVG 199

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G+D 
Sbjct: 200 VNGVGKTTTAGKLARVVIGDGGSVVLGAADTFRAAAADQLQTWGERVGATVVRKHEGADP 259

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++A++A  Q   +  D +IIDTAGRLH  + LM  +GK+ RV+++        VL VLD
Sbjct: 260 ASVAFDAVSQGIEQGADTVIIDTAGRLHTKTGLMDELGKVKRVVEKK--AQVDEVLLVLD 317

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN LRQ  +F  V   TG+++TKMDGTA+GG +I +     +PV  +G+GEG +DL
Sbjct: 318 ATTGQNGLRQARVFAEVVNVTGIVLTKMDGTAKGGIIIQVQRELGVPVKLVGLGEGPDDL 377

Query: 299 EPFVAKDFSAVIT 311
            PF  + F   I 
Sbjct: 378 APFDPETFVDAIL 390


>gi|323126814|gb|ADX24111.1| cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 516

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 116/300 (38%), Positives = 169/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T +     +    ++ RR+D+   EELE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRIGFSARLNSFFANFRRVDEEFFEELEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    V +L+             ++     V+L VGVNGVGKTT IGKL
Sbjct: 273 AKLENAKKPDALKRVIVEKLVDIYEKDGQYNEAINYQDGLTVMLFVGVNGVGKTTSIGKL 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 333 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGVEKAVA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 393 EGADILLIDTAGRLQNKENLMAELEKMGRIIKRVIPDAPHETLLALDASTGQNALSQAKE 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   + 
Sbjct: 453 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKMDDIGEFHSEDFMKGLL 512


>gi|108763420|ref|YP_633013.1| signal recognition particle protein [Myxococcus xanthus DK 1622]
 gi|108467300|gb|ABF92485.1| signal recognition particle protein [Myxococcus xanthus DK 1622]
          Length = 548

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/318 (28%), Positives = 147/318 (46%), Gaps = 25/318 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            +  +TKGF +   +L       ++   +D+ +R+ +   L+ +D+   V +K V  +  
Sbjct: 1   MLETVTKGFRAAKNRLAG--KSELTPELVDESLRD-IRVSLLEADVAFDVVKKFVARVRE 57

Query: 73  KRYAKDVSV---------------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           K   + V                    +    + +  ++ P+          +   I++V
Sbjct: 58  KSVGELVQTTITDTAGQKRKVSPMDHFIKICHDELEALMGPVDTSLKLKPKGQLSGIMMV 117

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G+ G GKTT  GKL+ ++   G K +L A D +R AA+DQLK+  +R        E G  
Sbjct: 118 GLQGSGKTTTTGKLASRLLQEGRKPLLVAADIYRPAAVDQLKVLGERLKVPVY-HEPGIQ 176

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              LA   +  A+ +K DV++IDTAGRL  +  LMA +  +   ++      P ++L V 
Sbjct: 177 PPELAKRGYAAAREQKCDVVLIDTAGRLAIDESLMAELESIKGNVQ------PDNILLVC 230

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA  GQ+A+R    F       G I+TK+DG ARGG  + I      P+ FLG+GE ++ 
Sbjct: 231 DAMIGQDAVRTAAEFDRRLTLDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGESMDK 290

Query: 298 LEPFVAKDFSAVITGCLD 315
           LE F     +  I G  D
Sbjct: 291 LEEFRPAGLAGRILGFGD 308


>gi|260558341|ref|ZP_05830537.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium C68]
 gi|293556821|ref|ZP_06675382.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1039]
 gi|260075515|gb|EEW63821.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium C68]
 gi|291600905|gb|EFF31196.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1039]
          Length = 332

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 122/311 (39%), Positives = 178/311 (57%), Gaps = 11/311 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           +  +E +    K  KG   T     E + ++ ++ R +D+   EELE+ LI +D+G   A
Sbjct: 14  EEKTEEVEVQEKYDKGLEKTRKTFGERMNELFANFRTVDEDFFEELEETLIGADVGFETA 73

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-------SHRPHVILV 116
            +I E L  +   ++        +V   I + L+ L +    +             VIL 
Sbjct: 74  IRITEALRQEVKLRNAKKS---AEVQNAIIEKLVDLYEAEGINEVNELNIQEDGLTVILF 130

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ +    G KV++AA DTFR+ AIDQL +W +R   + V    G 
Sbjct: 131 VGVNGVGKTTSIGKLAHQFKKEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGG 190

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A ++A+ ++ DVL++DTAGRL N   LM  + K+ RV++R  P AP   L V
Sbjct: 191 DPAAVVFDALERAKTEQADVLLVDTAGRLQNKVNLMNELEKIKRVIQRELPEAPQETLLV 250

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q + F      TGL++TK+DGTA+GG ++ I     +PV  +G+GEGI+
Sbjct: 251 LDATTGQNAMVQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELHLPVKLVGLGEGID 310

Query: 297 DLEPFVAKDFS 307
           DLEPF   DF 
Sbjct: 311 DLEPFDPNDFV 321


>gi|262196637|ref|YP_003267846.1| signal recognition particle protein [Haliangium ochraceum DSM
           14365]
 gi|262079984|gb|ACY15953.1| signal recognition particle protein [Haliangium ochraceum DSM
           14365]
          Length = 568

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 91/323 (28%), Positives = 146/323 (45%), Gaps = 35/323 (10%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVE 68
               L KGF S   +L            LDD + EE    +   L+ +D+  +V ++ +E
Sbjct: 1   MFETLAKGFRSAKQRLSGV-------AELDDDIIEEALRDVRMSLLEADVEFSVTKRFLE 53

Query: 69  ELLTKRYAKDV---------------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
            +      + V                 Q  +    + +  M+ P+     W     P  
Sbjct: 54  RVREAARGERVQLKAKSQEYGVKTITPDQAFVKICQDELSNMMGPVDTSMRW-AKKGPTG 112

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I++VG+ G GKTT  GKL++ +S+  G K +L A D +R AA+DQL+   +R        
Sbjct: 113 IMMVGLQGSGKTTTTGKLARLLSERDGKKPLLVAADVYRPAAVDQLRTLGERLGMPVF-H 171

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G     +   A  +A     DV++ DTAGRL  +  LM  +  + R  K  +      
Sbjct: 172 AEGESPVVICKRAEARALEAGCDVILYDTAGRLTIDDQLMQELEDIDREAKPAN------ 225

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +  VLDA TGQ+A+   + F+      G+I+TK+DG ARGG  + +      P+ +LG+G
Sbjct: 226 IFLVLDAMTGQDAVNTADNFNKRLDLDGVILTKLDGDARGGAALSVKEVTGKPIKYLGMG 285

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           EG++ LE F  +  ++ I G  D
Sbjct: 286 EGMDKLEEFRPEGLASRILGMGD 308


>gi|255524260|ref|ZP_05391219.1| signal recognition particle-docking protein FtsY [Clostridium
           carboxidivorans P7]
 gi|296185382|ref|ZP_06853792.1| signal recognition particle-docking protein FtsY [Clostridium
           carboxidivorans P7]
 gi|255512085|gb|EET88366.1| signal recognition particle-docking protein FtsY [Clostridium
           carboxidivorans P7]
 gi|296050216|gb|EFG89640.1| signal recognition particle-docking protein FtsY [Clostridium
           carboxidivorans P7]
          Length = 303

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 133/288 (46%), Positives = 184/288 (63%), Gaps = 4/288 (1%)

Query: 26  LKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
               E ITD++S    +DD + EELE++LI +DIGV     I+E+L  K   K +    +
Sbjct: 18  DNFTEKITDMLSGAMTIDDDLYEELEEILITADIGVDTTLYIIEKLKEKIREKKIKDPSL 77

Query: 85  LYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           + D + E+I  +L   S       +  P VILV+GVNGVGKTT IGK+S K+ + G KV+
Sbjct: 78  VSDCLKEVIVDILGEESS--TIKPNKTPEVILVIGVNGVGKTTSIGKISAKLKNDGYKVL 135

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           +AA DTFR+AAIDQL++W+ R + D +  + GSD AA+ ++A + A+A+K DVLI DTAG
Sbjct: 136 MAAADTFRAAAIDQLEVWSSRAAVDIIKHQEGSDPAAVVFDAVQAAKARKTDVLICDTAG 195

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RLHN   LM  +GK+ RV+ R    A    L VLDATTGQNA+ Q + F  V    G+I+
Sbjct: 196 RLHNKKNLMDELGKINRVIDREFNEAERETLLVLDATTGQNAVEQAKQFMEVCPIGGIIL 255

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           TK+DGTA+GG +I I  +  IPV  +GVGEGI+DL+ F  K+F   + 
Sbjct: 256 TKLDGTAKGGIVISIKHSLNIPVKLVGVGEGIDDLQEFNPKEFVEALF 303


>gi|158425575|ref|YP_001526867.1| signal recognition particle protein [Azorhizobium caulinodans ORS
           571]
 gi|158332464|dbj|BAF89949.1| signal recognition particle protein [Azorhizobium caulinodans ORS
           571]
          Length = 511

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   +  +     L +        E+   LI +D+ + V +   +++  +   
Sbjct: 2   FDSLSDRLGGILDKLKRRGALTEADVGEAMREVRRALIEADVALDVVRSFTDKVRQRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V +++ + L   + P + +       IL+VG+ G GKTT   K+
Sbjct: 62  VEVIKSVTPGQMVVKIVHDVLVETLGSDADPIDLNAPAPVP-ILMVGLQGSGKTTTTAKI 120

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++++ G  +V++A+ DT R AA++QL     +   + +    G  A  +A  A   A+
Sbjct: 121 AKRLTERGNRRVLMASLDTRRPAAMEQLATLGTQVEVNTLPIVPGQSAVQIAKRAMDAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGR+  +  LMA + ++  +        PH VL V D+ TGQ+A+   +
Sbjct: 181 FGNYDVVILDTAGRVTLDEALMAEVAEVKAITN------PHEVLLVADSLTGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F +    TG+++T+ DG  RGG  + +      P+  LG GE ++ LE F  +  +  I
Sbjct: 235 AFDSRVSITGIVLTRADGDGRGGAALSMRAVTGKPIKLLGTGEKMDGLEDFDPQRVAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|332372642|gb|AEE61463.1| unknown [Dendroctonus ponderosae]
          Length = 505

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++ V     +E+   L+ +D+ V + + + E +      
Sbjct: 3   LADLGRKITSALHGLSKATIINEDVLNGMLKEICAALLEADVNVKMVKALRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KPF      +P++I+ VG+ G GKTT   K+
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELVKLVDPSVKPFQ-PVKGKPNIIMFVGLQGSGKTTTCTKM 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K    +    F  S    D   +A +  +  + 
Sbjct: 122 AYYYQKKNWKSCLVCADTFRAGAYDQVKQNCTKARIPFYGSYTEVDPVIIAQDGVEMFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   +K      P +++ V+DAT GQ    Q   
Sbjct: 182 EHFEIIIVDTSGRHKQEDSLFEEMLQVSNAVK------PDNIVFVMDATIGQACEEQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A      +I+TK+DG A+GGG +  V     P+ F+GVGE I+DLEPF  K F + + 
Sbjct: 236 FKAKVDVGSVIITKLDGHAKGGGALSAVAATSSPIIFIGVGEHIDDLEPFKTKPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|28210933|ref|NP_781877.1| signal recognition particle receptor ftsY [Clostridium tetani E88]
 gi|28203372|gb|AAO35814.1| signal recognition particle receptor ftsY [Clostridium tetani E88]
          Length = 303

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 126/302 (41%), Positives = 186/302 (61%), Gaps = 4/302 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            +  KL +G   T       I+ +++    +D+ + EELE++LI SDIGV  +  I++ L
Sbjct: 4   GFFGKLKEGLTKTKDNFTGKISSMLNLYVNIDEDLFEELEEILITSDIGVETSLDIIDNL 63

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K   K +   + +   + E+I  ML         +    P +ILV+GVNGVGKTT IG
Sbjct: 64  REKIKEKKIKDPKEVIPCLKEVIIDMLGDEENSIIPE--KTPEIILVIGVNGVGKTTSIG 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+S K+ + G KV++AAGDTFR+AAI+QL++W+ R   D +  + GSD AA+ +++ + A
Sbjct: 122 KMSHKLKNNGFKVLMAAGDTFRAAAIEQLEVWSQRAGVDIIRQQEGSDPAAVVFDSIQAA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI DTAGRLHN   LM  + K+ R+++R    A      VLDATTGQNAL+Q 
Sbjct: 182 KARKTDVLICDTAGRLHNKKNLMDELSKINRIVEREYSEANKKTYLVLDATTGQNALQQA 241

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  V    G+I+TK+DGTA+GG +I I     IPV  +GVGEGI+DL+ F +++F   
Sbjct: 242 KQFTQVCNVDGIILTKLDGTAKGGIVISIKHQLNIPVKLIGVGEGIDDLQNFNSREFVEA 301

Query: 310 IT 311
           + 
Sbjct: 302 LF 303


>gi|139436970|ref|ZP_01771130.1| Hypothetical protein COLAER_00103 [Collinsella aerofaciens ATCC
           25986]
 gi|133776617|gb|EBA40437.1| Hypothetical protein COLAER_00103 [Collinsella aerofaciens ATCC
           25986]
          Length = 305

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 105/308 (34%), Positives = 172/308 (55%), Gaps = 12/308 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +   L++G   +   L E          +D+   E+LED L+  D+G  VA ++ ++L
Sbjct: 1   MGFFDALSRGLERSRETLNEVFY---FGGEVDEDFWEDLEDTLVMGDMGAEVAIQVSDDL 57

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                 K++     L   ++E + +  +P+ +     FS  P  +L VG+NG GKTT +G
Sbjct: 58  RDAAAKKNLKTAPQLRRALAEQLEQHFVPIER---DPFSDTPSCVLFVGINGAGKTTTVG 114

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++  M+  G  V++ + DTFR+AAI+QL +W  R     +  + GSD A++ Y+   +A
Sbjct: 115 KIASAMAARGKNVVIGSADTFRAAAIEQLDVWGQRAGVPVIKRDRGSDPASVCYDVLDEA 174

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH-----APHSVLQVLDATTGQN 244
             +  D+++IDTAGRLH +  LM  + K++ V ++   +      P SV+ V+DA TGQN
Sbjct: 175 DKRGSDLVLIDTAGRLHTSPELMRELAKVVNVTRKRAANMAAGPMPVSVVLVIDAATGQN 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q   F+   G  G+IMTK+DGTA+GG  + +    K+P+  +GVGE ++DL+ F AK
Sbjct: 235 GLNQALEFNEALGLDGIIMTKLDGTAKGGIAMAVAEKLKLPILRVGVGEQVDDLQEFNAK 294

Query: 305 DFSAVITG 312
           DF   + G
Sbjct: 295 DFCRALVG 302


>gi|170750017|ref|YP_001756277.1| signal recognition particle protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656539|gb|ACB25594.1| signal recognition particle protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 521

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L   ++ +     L +        E+   L+ +D+ + V +   + +  K   
Sbjct: 2   FEGLSDRLSGILSGLTRRGALTEADVTAAMREVRRALLEADVALEVVRGFTDRVKEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V++ +  ML   ++  + +       IL+VG+ G GKTT   K+
Sbjct: 62  AVVLKSVTPGQMVVKIVNDELVAMLGTDAETVDLNAPAPVP-ILMVGLQGSGKTTTTAKI 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++S     KV+LA+ DT R AA++QL + A +   + +    G  A  +A  A   A+
Sbjct: 121 ARRLSDREKRKVLLASLDTRRPAAMEQLAVLAKQVGVESLPIVAGQSAVQIAKRAMDAAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   +  LMA   ++    K      PH VL V DA TGQ+A+    
Sbjct: 181 LGGFDVVMLDTAGRTTVDEGLMAEAAEVKAATK------PHEVLLVADALTGQDAVNTAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG +RGG  + +      P+  +GVGE ++ LE F     +  I
Sbjct: 235 AFDQRLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLVGVGEKVDALEEFHPARVANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|42527592|ref|NP_972690.1| signal recognition particle protein [Treponema denticola ATCC
           35405]
 gi|41818420|gb|AAS12609.1| signal recognition particle protein [Treponema denticola ATCC
           35405]
 gi|325474449|gb|EGC77636.1| signal recognition particle protein [Treponema denticola F0402]
          Length = 443

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 136/304 (44%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + K    +  +    ++ +       EE++  L+ +D+ + V ++ +     +   
Sbjct: 2   LENITEKFSGIMRSLSGKSKITEKNIEDTIEEIKTALLDADVNLRVVRRFINATAEEAKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q+    V + +   L    K  +        VIL +G+ G GKTT   KL
Sbjct: 62  ERVLKSVDPGQQFTKIVYDKMTSFLGDEKKALDLRGPDTQSVILFLGLQGSGKTTSAAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+ + G K +L A D  R AA++QL +     S      E   DA  +A  A   A+ 
Sbjct: 122 ALKLKNEGRKPLLVACDLIRPAAVEQLSVLGGNISVPVYK-EETKDAVKVAKNALAFAKK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DTAGRL  +  +M  I  +   +K      P   + V D+ TGQ+A+   + 
Sbjct: 181 NFYDTVIVDTAGRLQIDEDMMKEIVNIKSAVK------PMETILVADSMTGQSAVDVAKE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G +GLI+TK D   RGG  + +      P++++G GE + DLEPF     ++ I 
Sbjct: 235 FDEQVGLSGLILTKFDSDTRGGAALSLKTITGKPIFYIGTGEKLEDLEPFYPDRIASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|168701266|ref|ZP_02733543.1| signal recognition particle protein [Gemmata obscuriglobus UQM
           2246]
          Length = 481

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 142/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   +  L + +  +    RL  + V++   E+    + +D+   VA   +  +  K   
Sbjct: 2   FEGITKSLGDALKKLRGRGRLTAENVKDGLREVRRAFLEADVNFTVATDFIARVEAKSLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       ++++ +V E +  ++ P+        + RP V+++ G+ G GKTT   KL
Sbjct: 62  QDVLARVDPSEQIVKNVYEELVALMGPVDHKI-PQRADRPVVLMLCGLQGAGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +     K MLAA D  R  A++QL+   ++           ++   +   A  QA+ 
Sbjct: 121 ALTLKGQNRKPMLAAADLQRPGAVEQLRTLGEQIGVPVYS--EATNPVDVCRNAVAQAKK 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DTAGRL  +  LM  + ++ +++K      P     V+DA  GQ A    + 
Sbjct: 179 TLCDCVILDTAGRLQIDDALMDELKRIDKLVK------PDECYLVVDAMIGQEAANVAKT 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+        I+TK+DG ARGG  + I     +P+ F+G+GE ++ LE FV +  +  I 
Sbjct: 233 FNDALELNACILTKLDGDARGGAALSIKGVTGVPIKFVGMGEKVDKLEDFVPERMAGRIL 292

Query: 312 GCLDY 316
           G  D 
Sbjct: 293 GQGDM 297


>gi|312135008|ref|YP_004002346.1| signal recognition particle-docking protein ftsy
           [Caldicellulosiruptor owensensis OL]
 gi|311775059|gb|ADQ04546.1| signal recognition particle-docking protein FtsY
           [Caldicellulosiruptor owensensis OL]
          Length = 301

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 120/302 (39%), Positives = 189/302 (62%), Gaps = 4/302 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +G + T     E +  ++ S +++DD + EELE++L+ SD+GV  +QKI+E 
Sbjct: 1   MGFFDRLKEGLSKTKKNFTEKVESLLKSFKQVDDELFEELEEILVLSDVGVKTSQKIIEN 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +   + +S  + +    +++ + ++ +    N      P +IL+VGVNGVGKTT IG
Sbjct: 61  LKERVKKEKISDSQAIK---KILKEEMLNIIDLENKLSEKYPLIILMVGVNGVGKTTSIG 117

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++  +   G KV++AA DTFR+AA +QL+IWA R   D +    G+D AA+ ++  +  
Sbjct: 118 KIANLLKSNGKKVLIAAADTFRAAAAEQLEIWAKRVGCDIIKHVEGADPAAVVFDGIQAM 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI+DTAGRLH    L+  + K+ RV+ +  P A    L V+DATTGQNAL Q 
Sbjct: 178 RARKADVLIVDTAGRLHTKKNLIEELKKIDRVINQQMPEASKETLLVIDATTGQNALNQA 237

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     +G+++TK+DGTA+GG +I I    KIPV F+GVGE I+DL+ F AK+F   
Sbjct: 238 KEFNQAVNISGIVLTKLDGTAKGGIVISICDELKIPVKFVGVGEKIDDLQYFNAKEFVDA 297

Query: 310 IT 311
           + 
Sbjct: 298 LF 299


>gi|304436509|ref|ZP_07396483.1| cell division protein FtsY [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370555|gb|EFM24206.1| cell division protein FtsY [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 310

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 123/303 (40%), Positives = 176/303 (58%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L KG   T       I   II    +DD + +ELE+ L+ +D+GV   + ++  
Sbjct: 1   MGFFDRLKKGLTKTRENFTHSIERLIIGYADIDDDLIDELEETLLMADVGVKTTEMLIAS 60

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +      K++     L   + + I ++L              P VILVVG NGVGKTT I
Sbjct: 61  VRKGIRNKEIQTPDDLIPFLEKEIVRILDRGESD-TPMADQPPTVILVVGTNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS      G  V+LAA DTFR+AAI+QL++W  R     +    GSD AA+ ++A + 
Sbjct: 120 GKLSAYYRHQGKSVLLAAADTFRAAAIEQLEVWGKRADVQVIKHGEGSDPAAVVFDALQA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A++ +++I+DTAGRL   S LM  + K+ RV+ R  P APH  L VLDA TGQNA+ Q
Sbjct: 180 AKARRTELVIVDTAGRLQTKSNLMQELEKIYRVIGREVPGAPHETLLVLDAGTGQNAISQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E+F  VA  TG+++TK+DGTA+GG  I I     IP+ ++GVGEGI+DL PF A+DF  
Sbjct: 240 AELFSQVAPVTGVVLTKLDGTAKGGVTIGITAQLDIPIKWIGVGEGIDDLRPFHAEDFVN 299

Query: 309 VIT 311
            + 
Sbjct: 300 ALF 302


>gi|84501330|ref|ZP_00999535.1| signal recognition particle protein [Oceanicola batsensis HTCC2597]
 gi|84390621|gb|EAQ03109.1| signal recognition particle protein [Oceanicola batsensis HTCC2597]
          Length = 504

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 151/307 (49%), Gaps = 18/307 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L D+ V+  L +    L+ +D+ + VA+  V+ +  K   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSDEDVKTALREVRVALLEADVSLPVARDFVKAVQDKATG 61

Query: 77  KDVS-----VQRVLYDVSELIHKML--MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           + V+      Q+V+  V + +  +L   P + P      + P  IL+VG+ G GKTT   
Sbjct: 62  QAVTRSITPGQQVVKIVHDELVHVLAGDPEADPGKLKIDNPPAPILMVGLQGSGKTTTTA 121

Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+K++ +  G +V++A+ D  R AA++QL+I   +   D +    G D   +A  A  Q
Sbjct: 122 KLAKRLKEKEGKRVLMASLDVNRPAAMEQLQILGTQIGVDTLPIVKGEDPVQIAKRAKTQ 181

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A     DV ++DTAGRLH +  L+A    +       D   P   L V+D  TGQ+A+  
Sbjct: 182 ASMGGYDVYMLDTAGRLHIDQELIAQAAAV------RDVANPRETLLVVDGLTGQDAVNV 235

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F  +  + 
Sbjct: 236 ATEFDDKIGVSGVVLTRMDGDGRGGAALSMRAITGKPIKFVGLGEKMDAIETFEPERIAG 295

Query: 309 VITGCLD 315
            I G  D
Sbjct: 296 RILGMGD 302


>gi|89053248|ref|YP_508699.1| signal recognition particle subunit FFH/SRP54 (srp54) [Jannaschia
           sp. CCS1]
 gi|88862797|gb|ABD53674.1| signal recognition particle subunit FFH/SRP54 (srp54) [Jannaschia
           sp. CCS1]
          Length = 501

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 144/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  ++ +  K   
Sbjct: 2   FENLSERLGGVFDRLTKQGALSEDDVRTALREVRVALLEADVSLPVARTFIKNVEKKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V+      Q+V+  V + +   L     P      + P  IL+VG+ G GKTT   KL
Sbjct: 62  AAVTKSITPGQQVIKIVHDELIATLRGADDPGVLKIDNPPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++    G KV++A+ DT R AA++QL I   +   D +    G D   +A  A  QA 
Sbjct: 122 AKRLKDREGKKVLMASLDTNRPAAMEQLAILGTQIGVDTLPIVPGEDPVQIAKRAKTQAS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH ++ L+A    +       D   P   L V+D  TGQ+A+    
Sbjct: 182 LAGYDVYMLDTAGRLHIDAELIAQAAAV------RDVANPRETLLVVDGLTGQDAVNVAT 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F  +  +  I
Sbjct: 236 EFDDKIGVSGVVLTRMDGDGRGGAALSMREITGKPIRFVGLGEKMDAIETFEPERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|256750715|ref|ZP_05491600.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750298|gb|EEU63317.1| signal recognition particle-docking protein FtsY
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 284

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 122/286 (42%), Positives = 186/286 (65%), Gaps = 5/286 (1%)

Query: 28  LKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
           +   I  I++  R++D+ + EELE++LI +DIG++   KI+E +  K   + +     + 
Sbjct: 1   MTSKIDSIVTIGRKIDEELLEELEEILILADIGISTTSKIIEGIRQKAKERKIYDASQIK 60

Query: 87  DV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           ++ +E ++++L    +PF       P VIL VGVNGVGKTT IGKL+      G KVMLA
Sbjct: 61  ELLAEEVYEILQKDVEPFTL---TSPMVILNVGVNGVGKTTTIGKLAYLYKKEGKKVMLA 117

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           AGDTFR+AAIDQL+IWA+R +   +  + GSD A++ ++  + ++A+ +D+LI DTAGRL
Sbjct: 118 AGDTFRAAAIDQLEIWAERVNCPIIKHQEGSDPASVIFDGIQASKARGIDILICDTAGRL 177

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           HN   LM  + K+ +V+ R  P A      VLDATTGQNAL+Q ++F  V+  TG+++TK
Sbjct: 178 HNKKNLMEELRKIRKVIDREYPEARVETFLVLDATTGQNALQQAKIFKEVSDITGIVLTK 237

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +DGTA+GG ++ I     +P+ ++G+GEGI DL+ F AK F + I 
Sbjct: 238 LDGTAKGGIVVAIKSELNVPIRYIGIGEGIEDLQAFDAKSFVSAIF 283


>gi|291223336|ref|XP_002731666.1| PREDICTED: signal recognition particle 54kDa-like [Saccoglossus
           kowalevskii]
          Length = 492

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V      E+   L+ +D+ +   +K+ E + +    
Sbjct: 3   LADLGRKITTALRSLSNATVINEDVLNSMLSEICRALLEADVNIKQVKKLRENVRSVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  K +      +P+VI+ VG+ G GKTT   KL
Sbjct: 63  DEMAAGLNKRRMIQSAVFKELVKLVDPGVKAWT-PVKGKPNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E   + + 
Sbjct: 122 AYHYQKKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVVIAAEGVDKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++  V       +P +V+ V+DAT GQ    Q   
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVSNV------TSPDNVIYVMDATIGQACESQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D E F  K F + + 
Sbjct: 236 FKEKVDVASVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEQFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|313676112|ref|YP_004054108.1| signal recognition particle-docking protein ftsy [Marivirga
           tractuosa DSM 4126]
 gi|312942810|gb|ADR22000.1| signal recognition particle-docking protein FtsY [Marivirga
           tractuosa DSM 4126]
          Length = 319

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 120/301 (39%), Positives = 175/301 (58%), Gaps = 7/301 (2%)

Query: 15  RKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             L KG   T       +   ++   ++D+ V +ELE++LI SD+GV    KI++ +  +
Sbjct: 13  ESLDKGLEKTKESFFSKLGRTVVGKSQVDEDVLDELEEILISSDLGVNTTVKIIDRIEER 72

Query: 74  -RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTV 127
               K +    +   + E I  +L   +     DFS      +P+V+LVVGVNGVGKTT 
Sbjct: 73  VARDKYLGTSELDKILREEIAALLSENNTEDLKDFSLPENIKKPYVLLVVGVNGVGKTTT 132

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+ +    G KV+L A DTFR+AA+DQLK+W +R     V   + +D A++A++A K
Sbjct: 133 IGKLAAQYKKQGKKVILGAADTFRAAAVDQLKMWGERIEVPVVSHGMNTDPASVAFDAVK 192

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           Q   ++ D++IIDTAGRLH    LM  + K+ RV+++    APH VL VLD +TGQNA+ 
Sbjct: 193 QGVQEEADIVIIDTAGRLHTKVNLMNELSKIKRVIQKFVSEAPHEVLLVLDGSTGQNAMI 252

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F      T L +TK+DGTA+GG +I I    KIPV ++GVGE + DL+ F   +F 
Sbjct: 253 QAREFTKATEVTALAITKLDGTAKGGVVIGISEEFKIPVKYIGVGEKVEDLQVFNKMEFV 312

Query: 308 A 308
            
Sbjct: 313 D 313


>gi|196230889|ref|ZP_03129750.1| signal recognition particle protein [Chthoniobacter flavus
           Ellin428]
 gi|196225230|gb|EDY19739.1| signal recognition particle protein [Chthoniobacter flavus
           Ellin428]
          Length = 444

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 139/305 (45%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+  + KL++   D+    ++ +         +   L+ +D+   VA+  +  +  K   
Sbjct: 2   FSLLADKLQDVFKDLRGHGKITETNITDAMRAVRMALLEADVEFNVAKGFIARVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+++    + +  +L   ++P N +   +P  I++VG+NG GKTT   KL
Sbjct: 62  EEVLRGVHPGQQIVKIFHDELTALLGGDNEPLNLE---KPARIMMVGLNGAGKTTSSAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQ 190
           +  +   G   +L A D  R AAI+QL   A +             D   +   A   A+
Sbjct: 119 AMWLKKQGKAPLLIACDLHRPAAIEQLATLARQVGVPCFTPPPGEKDVLKVGRLAADWAK 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  +V I DTAGR   +  L+  I  +   L+      P  VL V DA TGQ A+    
Sbjct: 179 EQPGNVQIYDTAGRQEIDEPLIQEIKALREFLQ------PQEVLLVADAATGQQAVSVAT 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TGL++TK+DG ARGG  + +    + P+ F G+GE ++  EPF     +  I
Sbjct: 233 HFHQALNITGLVLTKLDGDARGGAALSMRQVTQRPIKFAGIGEKLDQFEPFFPDRLAGRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|289662764|ref|ZP_06484345.1| signal recognition particle protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 446

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 145/294 (49%), Gaps = 17/294 (5%)

Query: 32  ITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQ 82
           +  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q
Sbjct: 1   MERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQ 60

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK- 141
            ++  V + +  ++   +   N +    P +IL+ G+ G GKTT +GKL+K + +   K 
Sbjct: 61  ALIKIVRDELTAVMGAAAADLNLNVPA-PAIILMAGLQGAGKTTTVGKLAKHLKEKRKKK 119

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           VM+ + D +R AAI+QLK  A++    F  S+       +   A   A+   VDVL++DT
Sbjct: 120 VMVVSADVYRPAAIEQLKTLAEQVGVLFFASDASQKPVDIVRAAISDARKSFVDVLLVDT 179

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL  ++ +M  I  +   +       P   L V+DA TGQ+A    + F      TG+
Sbjct: 180 AGRLAIDAAMMDEIKALHAAVN------PTETLFVVDAMTGQDAANTAKAFGEALPLTGV 233

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++TK DG ARGG  + +      P+ F+G GE  + L+ F     ++ I    D
Sbjct: 234 VLTKTDGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVFHPDRVASRILDMGD 287


>gi|92119038|ref|YP_578767.1| signal recognition particle protein [Nitrobacter hamburgensis X14]
 gi|91801932|gb|ABE64307.1| signal recognition particle subunit FFH/SRP54 (srp54) [Nitrobacter
           hamburgensis X14]
          Length = 511

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 138/305 (45%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +     L +   +    E+   L+ +D+ + V +   +++  +   
Sbjct: 2   FDNLSERLGGILDRLTRRGALTEADVDAAMREVRRALLEADVSLDVVRSFTDKVREQAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q V+  V + +   L    +  + +    P  I++VG+ G GKTT   KL
Sbjct: 62  ATVVKSVTPGQMVVKIVHDELIATLGADGQTIDLNGV-PPITIMMVGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++++    KV++A+ D +R AA++QL +         +    G     +A  A +  +
Sbjct: 121 ARRLTERDKRKVLMASLDIYRPAAMEQLAVLGRDLDIQTLPILAGQKPEQIARRALEAGK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR   ++ +M+    +           PH VL V D+ TGQ+A+    
Sbjct: 181 LGGYDVVLLDTAGRTTLDNEMMSEAANIKAA------ARPHEVLLVADSLTGQDAVNLAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +G GE  + LE F     +  I
Sbjct: 235 SFDERVGLTGIVLTRVDGDGRGGAALSMRQVTGKPIKLIGTGEKTDALEDFHPSRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|319764120|ref|YP_004128057.1| signal recognition particle-docking protein ftsy [Alicycliphilus
           denitrificans BC]
 gi|317118681|gb|ADV01170.1| signal recognition particle-docking protein FtsY [Alicycliphilus
           denitrificans BC]
          Length = 374

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 124/303 (40%), Positives = 183/303 (60%), Gaps = 7/303 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
              W+ +L  G   T       I  + +  +++D + EELED L+ +D GV   Q ++ +
Sbjct: 77  RQGWMERLKSGLRKT----GGSIATVFTGTQINDALYEELEDALLMADTGVKATQHLLAD 132

Query: 70  LLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  + + AK      V   +++ +  +L PL KP     +H+P VI+V GVNG GKTT I
Sbjct: 133 LRRRVKEAKATEPAAVKALLADALADLLRPLEKPLVIG-AHQPTVIMVAGVNGAGKTTSI 191

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++ ++D G  V+LAA DTFR+AA +QL +WA R + + + S+ G D AA++++A   
Sbjct: 192 GKLTRHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEII-SQEGGDPAAVSFDAVTA 250

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL Q
Sbjct: 251 GRARGKDVVLVDTAGRLPTQLHLMEELKKIKRVVTKADATAPHEVLLVIDGNTGQNALAQ 310

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V  F      TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DLE F A++F+ 
Sbjct: 311 VRAFDDALSLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFDAREFAQ 370

Query: 309 VIT 311
            + 
Sbjct: 371 ALL 373


>gi|153791464|ref|NP_001093580.1| signal recognition particle 54C [Mus musculus]
          Length = 504

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQ------PDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|157835378|pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
           Protein Ffh From Thermus Aquaticus
          Length = 293

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 140/302 (46%), Gaps = 18/302 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + V +  VE +  +   
Sbjct: 1   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALG 60

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V       + +L  V E + + L   ++          ++  +VG+ G GKTT   KL
Sbjct: 61  KQVLESLTPAEVILATVYEALKEALGGEAR---LPVLKDRNLWFLVGLQGSGKTTTAAKL 117

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL++  ++     +    G    ++     ++A+ 
Sbjct: 118 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 177

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL     
Sbjct: 178 EARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEALSVARA 231

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  +  I 
Sbjct: 232 FDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 291

Query: 312 GC 313
           G 
Sbjct: 292 GM 293


>gi|21227369|ref|NP_633291.1| signal recognition particle protein Srp54 [Methanosarcina mazei
           Go1]
 gi|23822172|sp|Q8PXF3|SRP54_METMA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|20905728|gb|AAM30963.1| signal recognition particle subunit FFH/SRP54 [Methanosarcina mazei
           Go1]
          Length = 443

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 89/304 (29%), Positives = 148/304 (48%), Gaps = 22/304 (7%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
                 L+  +  +I + R+D+     V ++++  L+++D+ V +   + + +  +   +
Sbjct: 4   EKLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKE 63

Query: 78  DVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           D        + V+  V + + +++   +     D   +P  I++VG+ G GKTT   KL+
Sbjct: 64  DPPAGMNPREHVIRIVYQELMEIIGKGA-----DIQLKPQTIMMVGLQGSGKTTSAAKLA 118

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +     GLK  + A DTFR  A  QLK  +++ +  F   E   DA  +     K  +  
Sbjct: 119 RYFQRKGLKAGVVAADTFRPGAYHQLKTLSEKLNVGFYGEEGNPDAVEITIHGLKALE-- 176

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D+ I+DTAGR    + L+  + ++  V K      P     VLDA  GQ A +Q   F
Sbjct: 177 KYDIKIVDTAGRHALEADLIEEMERIHAVAK------PDHKFMVLDAGIGQQASQQAHAF 230

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +   G TG+I+TK+DGTA+GGG +  V   K P+ F+GVGE   D E F A  F + + G
Sbjct: 231 NDSVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLG 290

Query: 313 CLDY 316
             D 
Sbjct: 291 MGDL 294


>gi|330823605|ref|YP_004386908.1| signal recognition particle-docking protein FtsY [Alicycliphilus
           denitrificans K601]
 gi|329308977|gb|AEB83392.1| signal recognition particle-docking protein FtsY [Alicycliphilus
           denitrificans K601]
          Length = 374

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 124/303 (40%), Positives = 183/303 (60%), Gaps = 7/303 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
              W+ +L  G   T       I  + +  +++D + EELED L+ +D GV   Q ++ +
Sbjct: 77  RQGWMERLKSGLRKT----GGSIATVFTGTQINDALYEELEDALLMADTGVKATQHLLAD 132

Query: 70  LLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  + + AK      V   +++ +  +L PL KP     +H+P VI+V GVNG GKTT I
Sbjct: 133 LRRRVKEAKATEPAAVKALLADALADLLRPLEKPLVIG-AHQPTVIMVAGVNGAGKTTSI 191

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++ ++D G  V+LAA DTFR+AA +QL +WA R + + + S+ G D AA++++A   
Sbjct: 192 GKLTRHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEII-SQEGGDPAAVSFDAVTA 250

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL Q
Sbjct: 251 GRARGKDVVLVDTAGRLPTQLHLMEELKKIKRVVTKADATAPHEVLLVIDGNTGQNALAQ 310

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V  F      TGLI+TK+DGTA+GG L  I     +PVYF+GVGE + DLE F A++F+ 
Sbjct: 311 VRAFDDALSLTGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFDAREFAQ 370

Query: 309 VIT 311
            + 
Sbjct: 371 ALL 373


>gi|254476642|ref|ZP_05090028.1| signal recognition particle protein [Ruegeria sp. R11]
 gi|214030885|gb|EEB71720.1| signal recognition particle protein [Ruegeria sp. R11]
          Length = 507

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  ++++  +   
Sbjct: 2   FENLSERLSGVFDRLTKQGSLSEEDVKTALREVRVALLEADVSLPVARDFIKKVQDQATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +   L     P        P  IL+VG+ G GKTT  GKL
Sbjct: 62  QAVTKSVTPGQQVVKIVHDALVDTLRGEGDPGQLKIDSPPAPILMVGLQGSGKTTTTGKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G KV++A+ D +R AA+DQL +   +   D +    G     +A  A +QA 
Sbjct: 122 AKRLKEKEGKKVLMASLDVYRPAAMDQLAVLGTQIGVDTLPIVPGQKPVDIAKRAKQQAV 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  + +LM  +  +  V+       P   L V+D  TGQ A+   E
Sbjct: 182 LGGYDVYMLDTAGRLQIDEVLMQEVEDVRDVVS------PRETLLVVDGLTGQVAVEVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A  G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F     +  I
Sbjct: 236 EFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDAIETFEPDRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|325111176|ref|YP_004272244.1| signal recognition particle subunit FFH/SRP54 (srp54) [Planctomyces
           brasiliensis DSM 5305]
 gi|324971444|gb|ADY62222.1| signal recognition particle subunit FFH/SRP54 (srp54) [Planctomyces
           brasiliensis DSM 5305]
          Length = 495

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 153/305 (50%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAK 77
           F + S  L + + ++   R  +  +RE ++ +   L+ +D+   +    V+ +  +   +
Sbjct: 2   FETISKGLGDALGNLQRGRINETNIRESMQTVKQSLLEADVSYDIVDSFVKTVTEQSLGE 61

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            V       ++++  V++ +  ++ P+    ++  S    VI++ G+ G GKTT  GKL+
Sbjct: 62  KVLKSLKPGEQIVGIVNQELINLMGPIDHSLHFKQSGI-SVIMMCGLQGSGKTTTCGKLA 120

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQA 191
           + +   G K ML A D  R AAI+QLK    +        +   ++  A+     K+A+ 
Sbjct: 121 RMLQSEGRKPMLVAADLQRPAAIEQLKTVGAQVGVPVHAEDPKGTNPVAVCQNGLKKAKQ 180

Query: 192 KK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +  +D +I+DTAGRLH +  LM  +  + R L+      P  VL V DA TGQ+A+R  +
Sbjct: 181 QGDIDTVILDTAGRLHIDDELMKELASIDRKLQ------PDQVLLVTDAMTGQDAVRSAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G I+TK+DG  RGG  + +     +P+ F+GVGE ++ LE F     ++ I
Sbjct: 235 AFNESLELDGAILTKLDGDTRGGAALSVKQVTGVPIKFIGVGEQLDKLEAFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|20093371|ref|NP_619446.1| signal recognition particle protein Srp54 [Methanosarcina
           acetivorans C2A]
 gi|23822174|sp|Q8THD0|SRP54_METAC RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|19918737|gb|AAM07926.1| signal recognition particle, 54 kDa protein [Methanosarcina
           acetivorans C2A]
          Length = 440

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 148/304 (48%), Gaps = 22/304 (7%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
                 L+  +  +I + R+D+     V ++++  L+++D+ V +   + + +  +   +
Sbjct: 4   EKLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKE 63

Query: 78  DVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +        + V+  V + + +++   ++        +P  I++VG+ G GKTT   KL+
Sbjct: 64  EPPAGMNPREHVIRIVYQELMEIIGKGAE-----IQLKPQTIMMVGLQGSGKTTSAAKLA 118

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +     GLK  + A DTFR  A  QLK  A++ +  F   E   DA  +     K  +  
Sbjct: 119 RYFQRKGLKAGVVAADTFRPGAYHQLKTLAEKLNVGFYGEEGNPDAVEITKNGLKALE-- 176

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D+ I+DTAGR    + L+  + ++  V K      P     VLDA  GQ A +Q   F
Sbjct: 177 KYDIRIVDTAGRHALEADLIEEMERIHAVAK------PDHKFMVLDAGIGQQASQQAHAF 230

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +   G TG+I+TK+DGTA+GGG +  V   K P+ F+GVGE   D E F A  F + + G
Sbjct: 231 NDSVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLG 290

Query: 313 CLDY 316
             D 
Sbjct: 291 MGDL 294


>gi|296446373|ref|ZP_06888318.1| signal recognition particle protein [Methylosinus trichosporium
           OB3b]
 gi|296256146|gb|EFH03228.1| signal recognition particle protein [Methylosinus trichosporium
           OB3b]
          Length = 514

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S KL      +     L +        E+   L+ +D+ + V +   +++  K   
Sbjct: 2   FEGLSDKLSGIFDKLTRRGALTEADVAEAMREVRRALLEADVALDVVRSFTDKVQQKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V++++ + L   ++P + D       I++VG+ G GKTT   K+
Sbjct: 62  ANVVKSVSPGQMVVKIVNDVMVETLGSTAQPIDLDAPAPVP-IMLVGLQGAGKTTTTAKI 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G +V++A+ D  R AA +QL I   +   D +    G D   +   A + A+
Sbjct: 121 AKRLKERHGKRVLMASLDVKRPAAQEQLAILGRQVEVDTLPIVQGQDPVKITKRAEETAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGR H +  LM  + ++  V K      PH +L V+DA TGQ+A+   +
Sbjct: 181 REGYDVLLLDTAGRTHIDEPLMEEMAQIKAVSK------PHEILLVVDALTGQDAVNLAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T++DG  RGG  + +      P+  +  GE ++ L+ F     +  I
Sbjct: 235 NFDDRVGLTGIVLTRVDGDGRGGAALSMRAVTGKPIKLIATGEKMDALDEFSPSRIANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|302768411|ref|XP_002967625.1| hypothetical protein SELMODRAFT_169303 [Selaginella moellendorffii]
 gi|300164363|gb|EFJ30972.1| hypothetical protein SELMODRAFT_169303 [Selaginella moellendorffii]
          Length = 462

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 90/277 (32%), Positives = 139/277 (50%), Gaps = 12/277 (4%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMP 98
              +++   L+ +D+ + V +K+V  +  K     V       Q+++  V + +  ++  
Sbjct: 3   EPLQDIRRALLEADVSLPVVRKLVGSIAEKAVGTGVIRGVRPDQQLVKVVYDELISLMGG 62

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
            +    +  +  P VIL+ G+ GVGKTT  GKL+  M   G   ML A D +R AAI+QL
Sbjct: 63  QAAHIEFSGT-PPTVILMAGLQGVGKTTACGKLALYMKKKGKSCMLVATDIYRPAAIEQL 121

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
                +       +        +A    K+A+ K  DVLI+DTAGRL  ++ +M  + +M
Sbjct: 122 ITLGKQVEVPVFEAGTELSPVEIAKRGLKEAKEKGTDVLIVDTAGRLQVDATMMDELKQM 181

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            +VL       P+ VL V+DA TGQ A   V  F+   G TG IMTK+DG +RGG  + +
Sbjct: 182 KKVLN------PNEVLLVVDAMTGQEAAALVSAFNLEVGITGAIMTKVDGDSRGGAALSV 235

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                 P+ F+G GEG+N LE F     ++ I G  D
Sbjct: 236 QEVSGKPIKFVGEGEGMNALELFYPDRMASRILGMGD 272


>gi|332297535|ref|YP_004439457.1| signal recognition particle protein [Treponema brennaborense DSM
           12168]
 gi|332180638|gb|AEE16326.1| signal recognition particle protein [Treponema brennaborense DSM
           12168]
          Length = 468

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 138/304 (45%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               +    + +  +     + +       E+++  L+ +D+ + V ++ V   + +   
Sbjct: 27  LEKITNTFSDVVRKVSGKSSITEKNIEETVEQIKIALLEADVNLRVVRRFVNSTIEEAKG 86

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q+ +  + + I  +L    +           VIL++G+ G GKTT   KL
Sbjct: 87  EKVLRSVDPGQQFVKIIYDKIVSLLGDAKQDLKLKGPDTQSVILLLGLQGAGKTTAASKL 146

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +++  G K +LAA D  R AAI QL +  ++        E   DA  +A  A   A+ 
Sbjct: 147 AARLAKEGRKPLLAACDLVRPAAIQQLCVLGEKIGIPVYK-EDSKDAVRVAKNALAYAKK 205

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D LI+DTAGRL  +  +M  I  + + +       P  VL V DA TGQNA+   + 
Sbjct: 206 NGFDTLIVDTAGRLQIDESMMDEIAAVKKAVS------PDEVLLVADAMTGQNAVDIAKS 259

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK D  ARGG  + +      P+ F+G GE  +D EPF  +  ++ I 
Sbjct: 260 FDERLSLTGVILTKFDSDARGGAALSLKSVTGKPILFIGTGEKTSDFEPFHPERIASRIL 319

Query: 312 GCLD 315
           G  D
Sbjct: 320 GMGD 323


>gi|315656360|ref|ZP_07909249.1| cell division protein FtsY [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492919|gb|EFU82521.1| cell division protein FtsY [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 596

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 177/312 (56%), Gaps = 10/312 (3%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
                S +R+L +  A    K    I +++S+  L++   E +ED L+ +D+GV    ++
Sbjct: 286 PESKTSRLRRLKERLAG-KGKFGRAILNVLSNADLEESDWEAIEDELLAADLGVEPTVEL 344

Query: 67  VEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSK-----PFNWDFSHRPHVILVVGVN 120
           + +L  K+          +  +++ ++  ML   ++         D   +   IL+VGVN
Sbjct: 345 IGKLKVKQKVAGEKDATQVRRMAKRMLTDMLDRKAERRLNLEVPEDSPTQTAGILLVGVN 404

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           G GKTT +GKL++ +      V+L A DTFR+AA +QL+ W DR     V +E    D A
Sbjct: 405 GGGKTTTVGKLARLLVAERKTVVLGAADTFRAAAGEQLQTWGDRVGVPVVRAEKDQADPA 464

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A K A+    DV++IDTAGRL N   LM  +GK+ RV ++  P     VL V+DA
Sbjct: 465 SVAFDAAKAAREAGSDVVVIDTAGRLQNKVGLMDELGKIKRVAEKQVP--ITEVLLVIDA 522

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q ++F    G TG+++TK+DG+A+GG ++P+     IPV  +G+GEG +DL 
Sbjct: 523 TTGQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVIVPLQRELGIPVKLVGLGEGPDDLA 582

Query: 300 PFVAKDFSAVIT 311
           PFV  DF+  + 
Sbjct: 583 PFVPGDFADALL 594


>gi|315655726|ref|ZP_07908624.1| cell division protein FtsY [Mobiluncus curtisii ATCC 51333]
 gi|315489790|gb|EFU79417.1| cell division protein FtsY [Mobiluncus curtisii ATCC 51333]
          Length = 596

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 177/312 (56%), Gaps = 10/312 (3%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
                S +R+L +  A    K    I +++S+  L+D   E +ED L+ +D+GV    ++
Sbjct: 286 PESKTSRLRRLKERLAG-KGKFGRAILNVLSNADLEDSDWEAIEDELLAADLGVEPTVEL 344

Query: 67  VEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSK-----PFNWDFSHRPHVILVVGVN 120
           + +L  K+          +  +++ ++  ML   ++         D   +   +L+VGVN
Sbjct: 345 IGKLKVKQKVAGEKDATQVRRMAKRMLTDMLDRKAERRLNLEVPEDSPTQTAGVLLVGVN 404

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           G GKTT +GKL++ +      V+L A DTFR+AA +QL+ W DR     V +E    D A
Sbjct: 405 GGGKTTTVGKLARLLVAERKTVVLGAADTFRAAAGEQLQTWGDRVGVPVVRAEKDQADPA 464

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A K A+    DV++IDTAGRL N   LM  +GK+ RV ++  P     VL V+DA
Sbjct: 465 SVAFDAAKAAREAGSDVVVIDTAGRLQNKVGLMDELGKIKRVAEKQVP--ITEVLLVIDA 522

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q ++F    G TG+++TK+DG+A+GG ++P+     IPV  +G+GEG +DL 
Sbjct: 523 TTGQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVIVPLQRELGIPVKLVGLGEGPDDLA 582

Query: 300 PFVAKDFSAVIT 311
           PFV  DF+  + 
Sbjct: 583 PFVPGDFADALL 594


>gi|300727622|ref|ZP_07061011.1| signal recognition particle-docking protein FtsY [Prevotella
           bryantii B14]
 gi|299775142|gb|EFI71745.1| signal recognition particle-docking protein FtsY [Prevotella
           bryantii B14]
          Length = 318

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 120/301 (39%), Positives = 182/301 (60%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T   +   +  +++ + ++DD V ++LE++LI SD+GV    KI+E +  +  
Sbjct: 15  LDKGLEKTKESVFGKLARVVAGKSKVDDDVLDDLEEILITSDVGVETTVKIIERIEKRVE 74

Query: 76  A-KDVSVQRVLYDVSELIHKMLMPLSKPFN----WDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   + E I  +L   +   N        H+P+VILVVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTSELNQILREEIASLLAENNSDDNSNWDLPSDHKPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +  +AG KV L A DTFR+AA++Q+ IW +R     +  + GSD A++A++  + A+
Sbjct: 135 LAYQFKNAGKKVYLGAADTFRAAAVEQICIWGERVGVPVIKQQQGSDPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  ++ VLD +TGQNA  Q +
Sbjct: 195 ANGADVVLIDTAGRLHNKIGLMNELKKVKEVMKKVLPDAPDEIMLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F  V   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ D++ F   +F   +
Sbjct: 255 QFSKVTEITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDMQLFNKTEFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|187918549|ref|YP_001884112.1| signal recognition particle, subunit FFH/SRP54 [Borrelia hermsii
           DAH]
 gi|119861397|gb|AAX17192.1| signal recognition particle, subunit FFH/SRP54 [Borrelia hermsii
           DAH]
          Length = 449

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 148/308 (48%), Gaps = 14/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              KL  GF      +      +I+ + ++D + + ++D LI +D+ + V ++ V  +  
Sbjct: 1   MFEKLGAGFRDFVKYVSG--KSVINEKNIEDAI-DTIKDALIEADVNLRVVRRFVNSVAE 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +     V        + +  V++ +   L         +  ++   IL++G+ G GKTT 
Sbjct: 58  EAKGIKVLRDVDPKSQFVKIVNDKLVNFLGDKHSELILNPVNKLSCILMLGLQGSGKTTT 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+ ++     KV+L A DTFR+AA+DQL++  ++        E  +D   +  ++ +
Sbjct: 118 CAKLAMRLKSENRKVLLVAADTFRAAAVDQLRVLGEQIGISVFAIESENDPIKVVKKSIE 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ +  D +I+DT GRL    +L+  I K+  ++       P   + V DA TGQ A+ 
Sbjct: 178 YAKVELFDTVIVDTRGRLEVEDLLLKEIKKIKDIVT------PTETILVADAMTGQVAVN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+   G TG+I TK D  ARGG ++ +      P+ F+GVGE   DL+ F     +
Sbjct: 232 IAKEFNESVGITGVIFTKFDSDARGGAILSLKTICGAPIKFVGVGERPEDLDIFYPDRVA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|329117593|ref|ZP_08246310.1| signal recognition particle-docking protein FtsY [Streptococcus
           parauberis NCFD 2020]
 gi|326907998|gb|EGE54912.1| signal recognition particle-docking protein FtsY [Streptococcus
           parauberis NCFD 2020]
          Length = 537

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 121/310 (39%), Positives = 179/310 (57%), Gaps = 3/310 (0%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           VA  + S   K  +  A T       +    ++ RR+D+   EELE++LI SD+GV+VA 
Sbjct: 225 VAELNESDQDKYDRSLAKTRTGFTARLNAFFANFRRVDEEFFEELEEMLILSDVGVSVAT 284

Query: 65  KIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           ++ +EL  +   ++      L    V +L+             ++     V+L+VGVNGV
Sbjct: 285 RLTDELRQEVKLENAKKPEDLRRVIVQKLVDIYEKDGVYNEAVNYQKGLTVMLLVGVNGV 344

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ K  + G KVML A DTFR+ A+ QL  W  R     V     +D A++ 
Sbjct: 345 GKTTSIGKLAYKYKNEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVMGPEKADPASVV 404

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++  ++A ++ VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TG
Sbjct: 405 FDGVERAVSENVDILLIDTAGRLQNKENLMAELEKMGRIIKRVIPDAPHETLLALDASTG 464

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q + F  +   TGLI+TK+DG+A+GG ++ I     IPV F+G GE I+D+  F 
Sbjct: 465 QNALSQAKEFSKIMSLTGLILTKIDGSAKGGVVLAIRQELDIPVKFIGFGEKIDDIGQFD 524

Query: 303 AKDFSAVITG 312
           +++F   + G
Sbjct: 525 SEEFMKGLLG 534


>gi|149924993|ref|ZP_01913317.1| signal recognition particle-docking protein FtsY [Plesiocystis
           pacifica SIR-1]
 gi|149814140|gb|EDM73759.1| signal recognition particle-docking protein FtsY [Plesiocystis
           pacifica SIR-1]
          Length = 592

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 176/304 (57%), Gaps = 7/304 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            +   G A T       +  +   + ++ D +++++E++L  +DIG   A+ ++E + ++
Sbjct: 278 ERYRAGLAKTKRGFIAKLARLFKGKPKVSDDLKDDIEEVLFTADIGARTAETLLESVTSE 337

Query: 74  RYAKDVSVQRVLYDVSELIH-KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              K+V+    +++V       +L   +   ++     P+V+L++GVNGVGKTT +GKL+
Sbjct: 338 LDKKEVADPDAVWEVIRRKALDILDIDAPEIDYTPDPGPYVLLMIGVNGVGKTTTLGKLA 397

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +  +AG K +L AGDTFR+AA +QL++WA R   D    +  +D +++ ++   + + +
Sbjct: 398 ARHVEAGRKTLLVAGDTFRAAAGEQLEVWARRVGCDIHLGKENADPSSVLFDGITRGRDE 457

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR-----LDPHAPHSVLQVLDATTGQNALR 247
             D+++ DTAGRLH    LMA + KM R   +      D   PH +  VLDAT GQNAL 
Sbjct: 458 GYDIVLCDTAGRLHTRKELMAELAKMGRAATKALSKGRDEVEPHDIFLVLDATIGQNALA 517

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q +MF      +GL++TK+DGTA+GG ++ +V   KIP+ ++GVGE ++DL  F  + + 
Sbjct: 518 QAQMFKETMAFSGLVLTKLDGTAKGGVVLGVVDELKIPIRYIGVGEAVDDLRRFDPEAYC 577

Query: 308 AVIT 311
            V+ 
Sbjct: 578 EVLF 581


>gi|260892850|ref|YP_003238947.1| signal recognition particle-docking protein FtsY [Ammonifex
           degensii KC4]
 gi|260864991|gb|ACX52097.1| signal recognition particle-docking protein FtsY [Ammonifex
           degensii KC4]
          Length = 301

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 129/301 (42%), Positives = 181/301 (60%), Gaps = 1/301 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +    +L              I +++  R++D+ + EELED LI +D+GV   ++++E+L
Sbjct: 1   MGLFDRLKASLGKVRETFTAKIDNVLRRRKIDEELYEELEDTLILADVGVPATEELLEKL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +  A+ V     L  + +    + +             P VIL+VGVNG GKTT  GK
Sbjct: 61  KARVKAERVEEVEDLRRLLQE-EILHLLGEPVPLLLPPSPPAVILLVGVNGTGKTTTAGK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G KV+LAA DTFR+AAIDQL+IWA+++ + FV  + GSD AA+ ++A + A+
Sbjct: 120 LAYFFRQQGKKVLLAAADTFRAAAIDQLEIWAEKSGSLFVRQKEGSDPAAVVFDALQAAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+ VDV+I DTAGRLH  S LMA +GK++RV  R    APH VL VLDATTGQNAL Q  
Sbjct: 180 ARGVDVVIADTAGRLHTKSHLMAELGKIVRVAAREVEGAPHEVLLVLDATTGQNALSQAR 239

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F  V G TG+++TK+DGTA+GG +I I     +PV F+G GE I DL PF   +F   I
Sbjct: 240 LFKEVTGVTGIVLTKLDGTAKGGVVIAIRKELGLPVKFIGTGEKIEDLAPFDPAEFVKAI 299

Query: 311 T 311
            
Sbjct: 300 F 300


>gi|149184776|ref|ZP_01863094.1| signal recognition particle GTPase [Erythrobacter sp. SD-21]
 gi|148832096|gb|EDL50529.1| signal recognition particle GTPase [Erythrobacter sp. SD-21]
          Length = 499

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 93/309 (30%), Positives = 155/309 (50%), Gaps = 20/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +  VRE + +    L+ +D+ + V ++ ++ +  K   
Sbjct: 2   FDNLSDRLGNVFDKLKGRGSLSEGDVREAMREVRIALLEADVALPVVRRFIDAVTEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLM---PLSKPFNWDFSHRPHV-ILVVGVNGVGKTTV 127
            +V       Q+V+  V++ + +ML      ++P + + + +P V I++VG+ G GKTT 
Sbjct: 62  SEVLKSVTPGQQVVKIVNDELVEMLGGDGEDAEPRDLNLNAKPPVVIMMVGLQGSGKTTT 121

Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL K + +  G K M+A+ D  R AA +QLKI  ++     +    G     +A  A 
Sbjct: 122 TAKLGKLLREKHGKKSMMASLDVNRPAAQEQLKILGEQVDVATLPIMPGQQPVDIARRAM 181

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+    DVL++DTAGRLH +  LMA +  +  V       AP  VL V+D+ TGQ+A+
Sbjct: 182 EAAKLAAADVLLLDTAGRLHVDEALMAEMKAISNV------SAPTEVLLVVDSLTGQDAV 235

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F      TG+++T+MDG ARGG  + +      PV F G GE ++ +E F     
Sbjct: 236 NVAQSFTGEVPLTGVVLTRMDGDARGGAALSMRYVTGKPVKFAGTGEKLDAIEAFDPSRV 295

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 296 AGRILGMGD 304


>gi|269219657|ref|ZP_06163511.1| signal recognition particle-docking protein FtsY [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269210899|gb|EEZ77239.1| signal recognition particle-docking protein FtsY [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 405

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 183/311 (58%), Gaps = 7/311 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +      S +++L    A  S      +  I+S   L     EE+ED L+ +D+G+    
Sbjct: 97  EAPESVPSRMQRLRARLAR-SGGFGNALLKILSRGDLSPADWEEIEDTLLMADVGLEATT 155

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPL-SKPFNWD-FSHRPHVILVVGVNG 121
           +I++ L  +   +       +   + E + +++ P   +  + +     P  IL+VGVNG
Sbjct: 156 QIMDNLKKRTKVEGTRDPERVKAILREELLELIDPAADRSLHLERIDGDPASILMVGVNG 215

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT +GKL++ +   G +V+L A DTFR+AA DQL+ W +R   D V S+  G+D A+
Sbjct: 216 TGKTTTVGKLARVLVAEGSRVLLGAADTFRAAAADQLQTWGERVGVDVVRSDREGADPAS 275

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++A  + +   VDV+++DTAGRL N S LM  +GK+ RV+ +  P   + VL VLDAT
Sbjct: 276 VAFDAIDKGRETDVDVVLVDTAGRLQNKSGLMDELGKIKRVMSKRVP--VNEVLLVLDAT 333

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN +RQ E+F  V G TG+++TK+DGTA+GG +I +     +PV F+G+GEG++DL P
Sbjct: 334 TGQNGMRQAEVFAEVTGITGIVLTKLDGTAKGGIVISVQRELGVPVKFVGLGEGVDDLAP 393

Query: 301 FVAKDFSAVIT 311
           F A+ F   +T
Sbjct: 394 FDAEGFVDALT 404


>gi|46446933|ref|YP_008298.1| signal recognition particle [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400574|emb|CAF24023.1| probable signal recognition particle [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 309

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 115/303 (37%), Positives = 174/303 (57%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            S   K+    +     L + +  I    ++D+   E+LE LL  +D GV  A ++ E++
Sbjct: 7   KSSFAKVKLALSRARNLLSDKLKSIF-QGKIDEHTLEQLEQLLYEADFGVKTASELTEKI 65

Query: 71  LT-KRYAKDVSVQRVLYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
               R   ++  +  +  + + +  ++    S       S  P +IL+VGVNG GKTT +
Sbjct: 66  RDLHRQHPNLKTEDYIEALKQQLISLVSQYPSNLLELTSSQLPQIILIVGVNGNGKTTSV 125

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+ +    G KV++AA DTFR+AAI+QL++WA +   + V     SD AA+A++A + 
Sbjct: 126 AKLAYQFKQKGKKVLVAAADTFRAAAIEQLELWAHKLHIEIVKGHPKSDPAAVAFDAIQA 185

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+K D++IIDTAGRLH  + LM  + K+ R  ++     PH  L VLDATTGQNA+ Q
Sbjct: 186 AKARKCDLVIIDTAGRLHTKTPLMQELEKIKRSCQKASQTGPHETLLVLDATTGQNAIEQ 245

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + FH     TGLI+TK+DGTA+GG +I I     IPV F+G GEG  DL+PF  + F +
Sbjct: 246 AKQFHHFTPITGLILTKLDGTAKGGIVIAIQRELGIPVKFIGTGEGEEDLQPFDVQTFVS 305

Query: 309 VIT 311
            + 
Sbjct: 306 NLF 308


>gi|329769857|ref|ZP_08261256.1| hypothetical protein HMPREF0433_01020 [Gemella sanguinis M325]
 gi|328837911|gb|EGF87535.1| hypothetical protein HMPREF0433_01020 [Gemella sanguinis M325]
          Length = 357

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 123/297 (41%), Positives = 180/297 (60%), Gaps = 4/297 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   +       + ++ISS R +++   E+LE+LLI+SD+      ++V+ L  +
Sbjct: 39  EKFKKGLKKSRDNFSNALNNLISSYREINEEFFEDLEELLIQSDVSYNTVLELVDYLKEE 98

Query: 74  RYAKDVSVQRVLYD--VSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              +++     L D  + +L+   +    K   N+       + L VGVNGVGKTT IGK
Sbjct: 99  SQRQNLKEPSELQDMIIDKLVEVYMEGTVKSELNYAPDKELSIFLFVGVNGVGKTTSIGK 158

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G KV++AAGDTFR+ AIDQL +WA R+ AD V S  G+D+AA+ ++A + A+
Sbjct: 159 LAHNLKKEGKKVLIAAGDTFRAGAIDQLDVWAKRSGADIVKSHEGADSAAIIFDAIQSAK 218

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DVL+ DTAGRL N   LM  + K++RV+KR  P  PH VL  +DATTGQN + Q +
Sbjct: 219 AKGYDVLLCDTAGRLQNKDHLMKELEKIVRVIKREVPEGPHEVLLTIDATTGQNGILQAK 278

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            F  V+  TG+I+TK+DGTA+GG +I I     IPV  +G+GE I+DLE F  + + 
Sbjct: 279 TFKEVSDVTGVILTKLDGTAKGGIVIAIKKELDIPVKLVGLGENIDDLEVFDPEQYI 335


>gi|254485997|ref|ZP_05099202.1| signal recognition particle protein [Roseobacter sp. GAI101]
 gi|214042866|gb|EEB83504.1| signal recognition particle protein [Roseobacter sp. GAI101]
          Length = 501

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L D+ V+  L +    L+ +D+ + VA+  V+ +  K   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSDEDVKTALREVRVALLEADVSLPVARDFVKAVQDKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L    +P      + P  IL+VG+ G GKTT   KL
Sbjct: 62  QAVTKSITPGQQVVKIVHDALIDVLRGEGEPGALKIDNAPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ D  G +V++A+ D  R AA++QL I   +   D +    G +   +A  A  QA 
Sbjct: 122 AKRLKDRDGKRVLMASLDVNRPAAMEQLAILGVQIGVDTLPIVKGENPVQIAKRAKTQAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  +  LM        V    D   P   L V+D  TGQ+A++  E
Sbjct: 182 MGGYDVYMLDTAGRLSIDEELMQQ------VEAVRDVANPRETLLVVDGLTGQDAVQTAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  I
Sbjct: 236 NFNDRIGISGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGLGEKMDALETFEPERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|260061940|ref|YP_003195020.1| signal recognition particle protein [Robiginitalea biformata
           HTCC2501]
 gi|88786074|gb|EAR17243.1| signal recognition particle protein [Robiginitalea biformata
           HTCC2501]
          Length = 431

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 130/278 (46%), Gaps = 14/278 (5%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMP 98
              +E+   L+ +D+   +A++    +  K   ++V       Q +   V + + +++  
Sbjct: 17  ETTKEIRRALLDADVNFKIAKEFTNTVKEKAIGQNVLTTLQPGQLLTKIVKDELTQLMGG 76

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQ 157
            ++    D    P VIL+ G+ G GKTT  GKL+  +        +L A D +R AAIDQ
Sbjct: 77  EAEG--VDLQGSPAVILMSGLQGSGKTTFSGKLANFLKSKKTKNPLLVACDVYRPAAIDQ 134

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L +  D+        +   D   LA      A+    +V+IIDTAGRL  +  +M  I  
Sbjct: 135 LHVVGDQIGVPVFSDKEVKDPVQLAKAGVAHAKQNGHNVVIIDTAGRLAVDEQMMTEISN 194

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +       D  +P  +L V+DA TGQ+A+   + F+ V    G+++TK+DG  RGG  I 
Sbjct: 195 I------RDAVSPGEILFVVDAMTGQDAVNTAKAFNDVLDFDGVVLTKLDGDTRGGAAIS 248

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I      P+ F+G GE +  ++ F     +  I G  D
Sbjct: 249 IKSVVDKPIKFIGTGEKMEAIDVFHPSRMADRILGMGD 286


>gi|283780035|ref|YP_003370790.1| signal recognition particle protein [Pirellula staleyi DSM 6068]
 gi|283438488|gb|ADB16930.1| signal recognition particle protein [Pirellula staleyi DSM 6068]
          Length = 491

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREEL---EDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S    LK  +  +    RL +  +RE L   E  L+ +D+G+ V +  +  +  K   
Sbjct: 2   FESLQNGLKSALKTLQGKARLTESNMREGLKLVEQSLLEADVGLDVVRDFMGRVTEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q+V+  V + +  +L   ++P         ++ ++ G+ G GKTT  GKL
Sbjct: 62  EKVLLALDPTQQVVGIVRDELITLLGGPAEP-TIKLKAGLNIFMLCGLQGSGKTTTCGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S  +  +   VML A D  R AAI+QL I   +            D   +  EA ++A+ 
Sbjct: 121 STLLMKSKQSVMLCAADLQRPAAIEQLHIIGKQLGVPVFSKPGEQDPVKVCQEAVEEAKK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K V VLI+DTAGRL  +  LMA    + R+  R++P     V  V+D  TGQ+A+R    
Sbjct: 181 KDVTVLILDTAGRLAIDEELMAQ---LKRIDNRVEP---DQVFLVVDGMTGQDAVRSAGA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      GLIMTK+DG  RGG L+ +     +P+ F+G GE ++ LEPF  +  +  I 
Sbjct: 235 FNDALELDGLIMTKLDGDTRGGALLSVRQVTGVPIKFIGTGEHLDALEPFRPEGMAGRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GLGD 298


>gi|209879780|ref|XP_002141330.1| signal recognition particle protein SRP54 [Cryptosporidium muris
           RN66]
 gi|209556936|gb|EEA06981.1| signal recognition particle protein SRP54, putative
           [Cryptosporidium muris RN66]
          Length = 497

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    +L   I  + S+  +D+   +    E+   L+++D+ V +  ++   +     +
Sbjct: 3   LAELGTQLTAAIKKLQSATIVDEATIDNCLREIATALLQADVNVKLVAQLRNNIKKAISS 62

Query: 77  KD---VSVQRVL--YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +    V+ +R L    V E + K+L P  KP+      + ++++ VG+ G GKTT   K 
Sbjct: 63  QGNLQVASKRRLIQASVVEELVKILTPQRKPY-VPTKDKCNIVVFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S   +D   +A +  K+ + 
Sbjct: 122 AHYYQRKGWKTALVCADTFRAGAFDQLKQNATKAKIPFYGSYTETDPVKIASDGVKEFRD 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DT+GR    S L   + +++          P +V+ V+D+  GQ    Q   
Sbjct: 182 DNYDLIIVDTSGRHKQESSLFVEMQQIV------LSTKPDNVVFVMDSHIGQACYDQALA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F +V     +I+TK+DG A+GGG +  V     P+ F+G GE  +D EPF  + F + + 
Sbjct: 236 FCSVIDVGSVIITKLDGHAKGGGALSAVAATSAPIIFIGTGEHFDDFEPFETRGFVSRLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GLGD 299


>gi|4507215|ref|NP_003127.1| signal recognition particle 54 kDa protein isoform 1 [Homo sapiens]
 gi|50979080|ref|NP_001003272.1| signal recognition particle 54 kDa protein [Canis lupus familiaris]
 gi|84000369|ref|NP_001033290.1| signal recognition particle 54 kDa protein [Bos taurus]
 gi|197103004|ref|NP_001126912.1| signal recognition particle 54 kDa protein [Pongo abelii]
 gi|55640599|ref|XP_509903.1| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes]
 gi|109083294|ref|XP_001082531.1| PREDICTED: signal recognition particle 54 kDa protein isoform 1
           [Macaca mulatta]
 gi|114652587|ref|XP_001135626.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
 gi|114652590|ref|XP_001135796.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
 gi|114652592|ref|XP_001136048.1| PREDICTED: signal recognition particle 54 kDa protein isoform 5
           [Pan troglodytes]
 gi|149410337|ref|XP_001511597.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
 gi|149692831|ref|XP_001491075.1| PREDICTED: signal recognition particle 54kDa isoform 1 [Equus
           caballus]
 gi|296214799|ref|XP_002753859.1| PREDICTED: signal recognition particle 54 kDa protein isoform 1
           [Callithrix jacchus]
 gi|301774887|ref|XP_002922872.1| PREDICTED: signal recognition particle 54 kDa protein-like
           [Ailuropoda melanoleuca]
 gi|332229141|ref|XP_003263750.1| PREDICTED: signal recognition particle 54 kDa protein isoform 1
           [Nomascus leucogenys]
 gi|46577649|sp|P61010|SRP54_CANFA RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|46577650|sp|P61011|SRP54_HUMAN RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|68731680|sp|Q5R4R6|SRP54_PONAB RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|73621949|sp|Q4R965|SRP54_MACFA RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|122142857|sp|Q2T9U1|SRP54_BOVIN RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|119390387|pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
 gi|930|emb|CAA34385.1| unnamed protein product [Canis lupus familiaris]
 gi|784999|emb|CAA60132.1| SRP 54 [Homo sapiens]
 gi|1256820|gb|AAC50994.1| signal recognition particle [Homo sapiens]
 gi|12653733|gb|AAH00652.1| Signal recognition particle 54kDa [Homo sapiens]
 gi|13097267|gb|AAH03389.1| Signal recognition particle 54kDa [Homo sapiens]
 gi|55733132|emb|CAH93250.1| hypothetical protein [Pongo abelii]
 gi|67967747|dbj|BAE00356.1| unnamed protein product [Macaca fascicularis]
 gi|83405301|gb|AAI11271.1| Signal recognition particle 54kDa [Bos taurus]
 gi|90076082|dbj|BAE87721.1| unnamed protein product [Macaca fascicularis]
 gi|90076300|dbj|BAE87830.1| unnamed protein product [Macaca fascicularis]
 gi|177771971|gb|ACB73260.1| signal recognition particle (predicted) [Rhinolophus ferrumequinum]
 gi|189053540|dbj|BAG35706.1| unnamed protein product [Homo sapiens]
 gi|296475353|gb|DAA17468.1| signal recognition particle 54 kDa protein [Bos taurus]
 gi|325464281|gb|ADZ15911.1| signal recognition particle 54kDa [synthetic construct]
 gi|226429|prf||1512310A SRP protein 54kD
          Length = 504

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|269219645|ref|ZP_06163499.1| signal recognition particle protein [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269210887|gb|EEZ77227.1| signal recognition particle protein [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 520

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 144/308 (46%), Gaps = 21/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S ++      + S  RL     EE    +   L+ +D+ + V +     +  K   
Sbjct: 2   FNTLSDRITGSFKSLRSKGRLSASDVEETISQIRRALLDADVALPVVRSFTAAVREKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              S      Q+V+  V++ + ++L   ++    D S RP VI++ G+ G GKTT+ GKL
Sbjct: 62  AVASKALNPGQQVVKIVNDELVEILGGETREL--DLSRRPAVIMLAGLQGAGKTTLAGKL 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
            + +      KV+L A D  R  A++QL++   +   D    E G+   D  A+A     
Sbjct: 120 GRWLRTERNRKVLLVASDLQRPNAVNQLQVVGGQAGVDVWAPEPGNGVGDPVAVARSGLA 179

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+    DV+++DTAGRL  +  +M     +   +       P+ VL V+DA  GQ+A+ 
Sbjct: 180 RAEEYGYDVVVVDTAGRLGIDEEMMRQAIDIRAAVN------PNEVLFVIDAMIGQDAVA 233

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F    G TG++++K+DG  RGG  + +     +P+ F   GE + D E F A   +
Sbjct: 234 TANAFQDGVGFTGVVVSKLDGDTRGGAALSVRGVTGVPIMFASTGEKLTDFEQFHADRMA 293

Query: 308 AVITGCLD 315
           + I    D
Sbjct: 294 SRILDMGD 301


>gi|156554455|ref|XP_001604233.1| PREDICTED: similar to Srp54 protein [Nasonia vitripennis]
          Length = 444

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++ V     +E+   L+ SD+ + + + + E + +    
Sbjct: 3   LADLGRKITSALRSLSHATIINEEVLNSMLKEICAALLESDVNIRLVKNLRENVRSVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  K +      RP+VI+ VG+ G GKTT   KL
Sbjct: 63  DDMAGGLNKRRMIQSAVFKELVKLIDPGVKAYQ-PVKGRPNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A E       
Sbjct: 122 AYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVVIAQEGVDMFIK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L+  +   P +++ V+DAT GQ    Q + 
Sbjct: 182 EGYEIIIVDTSGRHKQEESLFEEM------LQVSNAVQPDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + PV F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKERVNVGSIIITKLDGHAKGGGALSAVAATQSPVIFVGTGEHIDDLEPFKTKPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|66362756|ref|XP_628344.1| SRP54. signal recognition 54.  GTpase. [Cryptosporidium parvum Iowa
           II]
 gi|46229785|gb|EAK90603.1| SRP54. signal recognition 54.  GTpase. [Cryptosporidium parvum Iowa
           II]
          Length = 515

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 18/318 (5%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVA 63
            +  S+ +      A    +L   I    SS   D+       +E+   L+++D+ V + 
Sbjct: 5   PKEESYFKVFLMVLADLGGQLASAIRKFQSSTIADEAAIDLCLKEIATALLKADVNVKLV 64

Query: 64  QKIVEELLTKRYAKDVSV------QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
            ++   +  K   ++ SV      +++   V E +  +L P   P+      + +VI+ V
Sbjct: 65  AQLRNNIK-KAVEQEDSVGGSNRRRQIQSAVVEELVNILTPSRTPY-VPQRDKSNVIVFV 122

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G+ G GKTT   K +      G K  L   DTFR+ A DQLK  A +    F  S   +D
Sbjct: 123 GLQGSGKTTTCTKFANYYQRRGWKTALVCADTFRAGAFDQLKQNATKVKIPFYGSYTETD 182

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A +  ++ + +  D++I+DT+GR    S L   + +++          P  V+ V+
Sbjct: 183 PVKIARDGVREFRKEGYDLIIVDTSGRHKQESSLFVEMEQVV------METNPDDVVFVM 236

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ    Q   F        +I+TK+DG A+GGG +  V     P+ F+G GE  ++
Sbjct: 237 DSHIGQACYDQAMAFCNAVDVGSVIITKLDGHAKGGGALSAVAATGAPIIFIGTGEHFDE 296

Query: 298 LEPFVAKDFSAVITGCLD 315
            EPF  K F + + G  D
Sbjct: 297 FEPFETKGFVSRLLGLGD 314


>gi|261207046|ref|ZP_05921735.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium TC 6]
 gi|289565321|ref|ZP_06445771.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium D344SRF]
 gi|294614482|ref|ZP_06694397.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1636]
 gi|260078674|gb|EEW66376.1| cell division transporter substrate-binding protein FtsY
           [Enterococcus faecium TC 6]
 gi|289162811|gb|EFD10661.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium D344SRF]
 gi|291592659|gb|EFF24253.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecium E1636]
          Length = 332

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 121/311 (38%), Positives = 178/311 (57%), Gaps = 11/311 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           +  +E +    K  KG   T     E + ++ ++ R +D+   EELE+ LI +D+G   A
Sbjct: 14  EEKTEEVEVQEKYDKGLEKTRKTFGERMNELFANFRTVDEDFFEELEETLIGADVGFETA 73

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-------SHRPHVILV 116
            +I E L  +   ++        +V   I + L+ L +    +             VIL 
Sbjct: 74  IRITEALRQEVKLRNAKKS---AEVQNAIIEKLVDLYEAEGINEVNELNIQEDGLTVILF 130

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT IGKL+ +  + G KV++AA DTFR+ AIDQL +W +R   + V    G 
Sbjct: 131 VGVNGVGKTTSIGKLAHQFKNEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGG 190

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A ++ + ++ DVL++DTAGRL N   LM  + K+ RV++R  P AP   L V
Sbjct: 191 DPAAVVFDALERVKTEQADVLLVDTAGRLQNKVNLMNELEKIKRVIQRELPEAPQETLLV 250

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA+ Q + F      TGL++TK+DGTA+GG ++ I     +PV  +G+GEGI+
Sbjct: 251 LDATTGQNAMVQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELHLPVKLVGLGEGID 310

Query: 297 DLEPFVAKDFS 307
           DLEPF   DF 
Sbjct: 311 DLEPFDPNDFV 321


>gi|224282424|ref|ZP_03645746.1| signal recognition particle protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 542

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 144/317 (45%), Gaps = 33/317 (10%)

Query: 25  SLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           + +L      + S  +L     DG   E+   L+ +D+ + V +     +  +    +VS
Sbjct: 2   TDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTARIRERALGTEVS 61

Query: 81  -----VQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                 Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GKL   
Sbjct: 62  EALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGKLGYW 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CSEIGSDA 178
           + D+G   +L A D  R  A+ QL++  +R                        E   D 
Sbjct: 121 LKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGDSVSAPGETSGDP 180

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A ++   A+ K  D +IIDTAGRL  + +LM     +       D   P+ +L V+D
Sbjct: 181 VKVARDSIALAKQKLYDTVIIDTAGRLGVDEVLMQQARDI------RDAVNPNEILFVID 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG+ D 
Sbjct: 235 AMIGQDAVQTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASTGEGLKDF 294

Query: 299 EPFVAKDFSAVITGCLD 315
           E F     ++ I    D
Sbjct: 295 EVFHPDRMASRILDMGD 311


>gi|311260885|ref|XP_001927834.2| PREDICTED: signal recognition particle 54 kDa protein isoform 1
           [Sus scrofa]
          Length = 506

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|157879167|pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
          Length = 295

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 141/302 (46%), Gaps = 18/302 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + VA+  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V       + +L  V E + + L   ++          ++  +VG+ G GKTT   KL
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEAR---LPVLKDRNLWFLVGLQGSGKTTTAAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL++  ++     +    G    ++     ++A+ 
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL     
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEALSVARA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  +  I 
Sbjct: 233 FDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292

Query: 312 GC 313
           G 
Sbjct: 293 GM 294


>gi|5822519|pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
           Protein Ffh From Thermus Aquaticus
 gi|5822520|pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
           Protein Ffh From Thermus Aquaticus
 gi|42543232|pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
 gi|118137447|pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
 gi|118137448|pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
 gi|118137449|pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
 gi|122920833|pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
           And Ftsy
 gi|122920834|pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
           And Ftsy
 gi|157832108|pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
           Protein Ffh From Thermus Aquaticus
 gi|315113199|pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
          Length = 294

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 141/302 (46%), Gaps = 18/302 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L+E I  +    R+ +        E+   L+ +D+ + VA+  VE +  +   
Sbjct: 2   FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V       + +L  V E + + L   ++          ++  +VG+ G GKTT   KL
Sbjct: 62  KQVLESLTPAEVILATVYEALKEALGGEAR---LPVLKDRNLWFLVGLQGSGKTTTAAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G + +L A DT R AA +QL++  ++     +    G    ++     ++A+ 
Sbjct: 119 ALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++++DTAGRL  +  LM  + ++  VL       P  VL VLDA TGQ AL     
Sbjct: 179 EARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDAMTGQEALSVARA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGL++TK+DG ARGG  +        P+YF GV E    LEPF  +  +  I 
Sbjct: 233 FDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292

Query: 312 GC 313
           G 
Sbjct: 293 GM 294


>gi|291403728|ref|XP_002718183.1| PREDICTED: signal recognition particle 54kDa isoform 1 [Oryctolagus
           cuniculus]
          Length = 504

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|46190760|ref|ZP_00206561.1| COG0541: Signal recognition particle GTPase [Bifidobacterium longum
           DJO10A]
 gi|189439913|ref|YP_001954994.1| signal recognition particle GTPase [Bifidobacterium longum DJO10A]
 gi|239622495|ref|ZP_04665526.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312133329|ref|YP_004000668.1| ffh [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482005|ref|ZP_07941030.1| signal recognition particle protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322690501|ref|YP_004220071.1| signal recognition particle protein [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189428348|gb|ACD98496.1| Signal recognition particle GTPase [Bifidobacterium longum DJO10A]
 gi|239514492|gb|EEQ54359.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311772547|gb|ADQ02035.1| FFh [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916572|gb|EFV37969.1| signal recognition particle protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320455357|dbj|BAJ65979.1| signal recognition particle protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 544

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 145/317 (45%), Gaps = 33/317 (10%)

Query: 25  SLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           + +L      + S  +L     DG   E+   L+ +D+ + V +    ++  +    +VS
Sbjct: 2   TDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALGTEVS 61

Query: 81  V-----QRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                 Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GKL   
Sbjct: 62  DALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGKLGYW 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CSEIGSDA 178
           + D+G   +L A D  R  A+ QL++  +R                        +   D 
Sbjct: 121 LKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGVQSDGGEAVAAPGQTSGDP 180

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A ++ + A+ K  D +IIDTAGRL  +  LM     +       D   P+ +L V+D
Sbjct: 181 VKVARDSIELAKQKLYDTVIIDTAGRLGVDEELMKQARDI------RDAVRPNEILFVID 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG+ D 
Sbjct: 235 AMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNGEGLKDF 294

Query: 299 EPFVAKDFSAVITGCLD 315
           E F     ++ I    D
Sbjct: 295 EVFHPDRMASRILDMGD 311


>gi|322688491|ref|YP_004208225.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320459827|dbj|BAJ70447.1| signal recognition particle protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 544

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 145/317 (45%), Gaps = 33/317 (10%)

Query: 25  SLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           + +L      + S  +L     DG   E+   L+ +D+ + V +    ++  +    +VS
Sbjct: 2   TDRLSNAFKHLKSKGKLSEADIDGTIREIRRALLDADVALDVVRSFTGKVRERALGTEVS 61

Query: 81  V-----QRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                 Q+V+  V+E +  +L   + +P N+   + P +I++ G+ G GKTT+ GKL   
Sbjct: 62  DALNPAQQVVKIVNEELTDVLGQGVDRPLNF-AKNPPTIIMLAGLQGAGKTTLAGKLGYW 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----------------CSEIGSDA 178
           + D+G   +L A D  R  A+ QL++  +R                        +   D 
Sbjct: 121 LKDSGHTPLLVAADLQRPNAVTQLQVVGERAGVPVYAPEKGIQSDGGEAVAAPGQTSGDP 180

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A ++ + A+ K  D +IIDTAGRL  +  LM     +       D   P+ +L V+D
Sbjct: 181 VKVARDSIELAKQKLYDTVIIDTAGRLGVDEELMKQARDI------RDAVRPNEILFVID 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A++  + F      TG++++K+DG ARGG  + +      P+ F   GEG+ D 
Sbjct: 235 AMIGQDAVKTAKAFDEGVDFTGVVLSKLDGDARGGAALSVASVTGKPILFASNGEGLKDF 294

Query: 299 EPFVAKDFSAVITGCLD 315
           E F     ++ I    D
Sbjct: 295 EVFHPDRMASRILDMGD 311


>gi|146329515|ref|YP_001209772.1| signal recognition particle FtsY [Dichelobacter nodosus VCS1703A]
 gi|50262050|gb|AAT72765.1| putative signal recognition receptor [Dichelobacter nodosus]
 gi|146232985|gb|ABQ13963.1| signal recognition particle FtsY [Dichelobacter nodosus VCS1703A]
          Length = 450

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 125/312 (40%), Positives = 191/312 (61%), Gaps = 5/312 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ +K A   +S+  +L  G A T           +  + LD  + ++LE  L+ +D G+
Sbjct: 140 IAAEKSAEAEVSYFARLKMGLAKTRDNFAAVF---LGKKALDQDLLDDLEMRLLTADCGI 196

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            + +KI+  +  K   K+++    +   V++ + ++L P  +P   +  H+P VIL+ G+
Sbjct: 197 EITEKIIAHIKDKMNRKELADSDAVQKAVADYMIELLTPYEQPLCVE-KHQPFVILMAGI 255

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT IGKLS ++   G K+MLAA DTFR+AA++QL+ W +R     +  + G+DAA
Sbjct: 256 NGAGKTTTIGKLSHRLQQEGKKIMLAAADTFRAAAVEQLQTWGERHHIPVIAQKTGADAA 315

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++AY+A + AQA+K+DVLIIDTAGRLH    LM  + K+ RVL++LD   PH  L V+DA
Sbjct: 316 SVAYDALQSAQARKMDVLIIDTAGRLHTQDHLMDELKKVKRVLQKLDDKVPHETLLVIDA 375

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             GQNAL+Q   FH   G  GL++TK+DG+A+GG L  I    K+P+ F+GVGE  +DL 
Sbjct: 376 GNGQNALKQALSFHQDIGVDGLVITKLDGSAKGGILFAITEKLKVPIRFVGVGERSDDLH 435

Query: 300 PFVAKDFSAVIT 311
            F AK+F   + 
Sbjct: 436 AFNAKNFVFALL 447


>gi|283768302|ref|ZP_06341214.1| signal recognition particle protein [Bulleidia extructa W1219]
 gi|283104694|gb|EFC06066.1| signal recognition particle protein [Bulleidia extructa W1219]
          Length = 466

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 141/306 (46%), Gaps = 17/306 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S +L +    +     L D     + +E+   L+ +D+   + ++ +  +  K  
Sbjct: 2   AFDSLSERLNKTFRHLSGKGTLSDNNMEEMLKEVRVALLEADVNYGIVKEFLNTVREKAR 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+++  + + I  +L        W  S     I++VG+ G GKTT I K
Sbjct: 62  GEEVLKSVEPGQQLVKIIHDEIMVLLGSEDALVQWKDSGM-TTIMMVGLQGTGKTTSIAK 120

Query: 131 LSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++ ++    G K +L A D  R AAIDQLK      + +     +   A     +    A
Sbjct: 121 IANQVQVKQGRKALLIAADVIRPAAIDQLKTLGQEINTEVFSMGLNVSALETVEKGMAYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  D + IDTAGRLH +  LM  +  + +++       P  +L  +DA TGQ+ +   
Sbjct: 181 KEKNYDTVFIDTAGRLHIDEQLMKELQDINQLVH------PDEILLTVDAMTGQDIVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F      TGL++TK DG +RGGG++ +     +P+ F+G GE + D++ F     +  
Sbjct: 235 NAFKEALPLTGLVVTKFDGDSRGGGVLSVRKITGVPIKFVGEGEKVEDMDVFHPDRMADR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|31981338|ref|NP_036029.2| signal recognition particle 54 kDa protein [Mus musculus]
 gi|153791789|ref|NP_001093579.1| signal recognition particle 54 kDa protein [Mus musculus]
 gi|73622264|sp|P14576|SRP54_MOUSE RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|12848354|dbj|BAB27921.1| unnamed protein product [Mus musculus]
 gi|18043829|gb|AAH19683.1| Signal recognition particle 54a [Mus musculus]
 gi|74193669|dbj|BAE22786.1| unnamed protein product [Mus musculus]
          Length = 504

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQ------PDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|320529031|ref|ZP_08030123.1| signal recognition particle-docking protein FtsY [Selenomonas
           artemidis F0399]
 gi|320138661|gb|EFW30551.1| signal recognition particle-docking protein FtsY [Selenomonas
           artemidis F0399]
          Length = 312

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 128/303 (42%), Positives = 184/303 (60%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L KG + T   L   I   II    +DD + +ELE+ L+ +D+GV   + ++  
Sbjct: 1   MGFFDRLKKGLSKTRENLTHNIERLIIGYADIDDDLIDELEETLLMADVGVKTTETLIAA 60

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +      K++     L   + + I ++L      F    +  P V+LVVG NGVGKTT I
Sbjct: 61  VRKGIKQKEIRSPEDLIPFLEKEIVRILEEGDDTFRM-AAQGPTVLLVVGTNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS      G  V+LAA DTFR+AAIDQL+IW +RT+A  V    GSD AA+ ++A + 
Sbjct: 120 GKLSAYYRRQGKAVLLAAADTFRAAAIDQLEIWGNRTNAQVVKHAEGSDPAAVVFDAMQA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ VD++I+DTAGRL   S LM  + K+ RV+ R  P APH  L VLDA TGQNA+ Q
Sbjct: 180 AKARGVDIVIVDTAGRLQTKSNLMQELEKIYRVIGREIPGAPHETLLVLDAGTGQNAISQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E+F   A  +G+++TK+DGTA+GG  I I     IP+ ++GVGEG++DL PF A+DF +
Sbjct: 240 AELFTKAAPVSGVVLTKLDGTAKGGVTIGIKSQLSIPIKWIGVGEGVDDLRPFRAEDFVS 299

Query: 309 VIT 311
            + 
Sbjct: 300 ALF 302


>gi|20151307|gb|AAM11013.1| AT23778p [Drosophila melanogaster]
          Length = 569

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++     + +E+   L+ +D+ + + +++ E +      
Sbjct: 3   LADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      + +V++ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +     + 
Sbjct: 122 AYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +  +   +       P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVS------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|156407984|ref|XP_001641637.1| predicted protein [Nematostella vectensis]
 gi|156228776|gb|EDO49574.1| predicted protein [Nematostella vectensis]
          Length = 498

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ SD+ V + +++ E +      
Sbjct: 3   LADLGRKITTALRSLSNATVINEEVLNAMLKEVCAALLESDVNVQLVKRLRENVKAAIDF 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMAAGLNKRKMIQHTVFQELCKLVDPGVKAWTPSKGKK-NVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S   +D   +A E  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTETDPVIIAQEGVEKFKE 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L+  +  +P +++ V+DAT GQ    Q   
Sbjct: 182 ENFEIIIVDTSGRHKQEESLFEEM------LQVSNAVSPDNIIFVMDATIGQACESQSRA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D E F  + F + + 
Sbjct: 236 FKEKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEQFKTRPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|256827011|ref|YP_003150970.1| signal recognition particle-docking protein FtsY [Cryptobacterium
           curtum DSM 15641]
 gi|256583154|gb|ACU94288.1| signal recognition particle-docking protein FtsY [Cryptobacterium
           curtum DSM 15641]
          Length = 384

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 106/301 (35%), Positives = 165/301 (54%), Gaps = 4/301 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
               + +G + T     E +  ++     +D+   E LE+ LI +D+G   A  IVE L 
Sbjct: 1   MFESVKQGMSRTRQMFTERMNVLLDRGPAVDEEFWEGLEEALILADVGAPAALDIVEALR 60

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +     +     + D   L  ++    +      F   P ++L VG+NG GKTT +GK+
Sbjct: 61  VEATRHALPDAYAVMDA--LADQIASSFTTEGQGLFEENPVLVLFVGINGAGKTTTVGKI 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G  V+L + DTFR+AAI+QL+ WA R+  + V  E GSD A++ Y+  ++A+A
Sbjct: 119 AAHSKAHGRSVLLGSADTFRAAAIEQLEEWARRSQVEIVERERGSDPASVCYDTIERAEA 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D+++IDTAGRLH +  LM  + K++ V++R     P   + V+DATTGQN L Q   
Sbjct: 179 LGSDLVLIDTAGRLHTSDDLMRELQKVVSVVRRR-AAMPVRTVLVIDATTGQNGLSQARA 237

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       GLI+TK+DGTA+GG  + I     +P+  +GVGE ++DL+ F A DF+A + 
Sbjct: 238 FDKALDLDGLIVTKLDGTAKGGIALAISHELSLPIVKVGVGEQLDDLQEFDAHDFAAALI 297

Query: 312 G 312
           G
Sbjct: 298 G 298


>gi|50365296|ref|YP_053721.1| signal recognition particle (signal binding protein) [Mesoplasma
           florum L1]
 gi|50363852|gb|AAT75837.1| signal recognition particle (signal binding protein) [Mesoplasma
           florum L1]
          Length = 450

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 144/302 (47%), Gaps = 19/302 (6%)

Query: 24  TSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            + ++K+ +   I    L D        E+   L+ +D+ V V ++++ ++  K   + +
Sbjct: 7   LTKRMKKSMEKNIKKSTLTDENIQETLREIRLALLEADVNVEVVKELISKIKEKTVGEYI 66

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                S Q++L  V E +  +L     P N   S +P V+++VG+ G GKTT   KL+  
Sbjct: 67  QEGVTSHQQMLKIVHEELIDILGTEKAPLNL--SKKPSVVMMVGLQGSGKTTSSSKLAHY 124

Query: 135 M-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +      K +L   D +R  AIDQL    ++ +               A +A + A+   
Sbjct: 125 LAKKEAKKPLLVGLDIYRPGAIDQLVELGNKNNIPVFEQG-KQSPLKTAKQALEFAEKNG 183

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DV+I+DTAGRL  +  LM  +  + ++       +P+  L V+D   GQ  +     F+
Sbjct: 184 HDVVILDTAGRLQIDKDLMNELNDLRKI------TSPNETLLVVDGMIGQEIINVTNEFN 237

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                TG+I+TK+DG ARGG  + I    K+P+ F+G GEG++ L PF  K  +  I G 
Sbjct: 238 NQLKLTGVIVTKLDGDARGGATLSIRYMTKLPIKFIGEGEGVSALAPFYPKRMADRILGM 297

Query: 314 LD 315
            D
Sbjct: 298 GD 299


>gi|254456325|ref|ZP_05069754.1| signal recognition particle-docking protein FtsY [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083327|gb|EDZ60753.1| signal recognition particle-docking protein FtsY [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 305

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 118/300 (39%), Positives = 180/300 (60%), Gaps = 1/300 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +        GF  ++     G+ DI+  + +DD   + +E+ LI+SD+GV  A +I E +
Sbjct: 1   MGIFDNFKSGFKKSASAFTSGLRDIVVKKEIDDKTLDRIEEYLIQSDVGVVAASEIKEII 60

Query: 71  LTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              +   +  +   +   + + I  ++ PL     ++   +    L+ GVNGVGKTT IG
Sbjct: 61  TDSKIDPNKDIADEIRTILKDYIISLMKPLENNNFFNKKEKISATLISGVNGVGKTTTIG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+SK +   G KVMLAA DTFR+AAI+QL+ WA++   +   S  G+D A++A++A ++A
Sbjct: 121 KISKILKANGNKVMLAASDTFRAAAIEQLENWANKVDVEITKSSQGADPASVAFKAIEEA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A   D ++IDTAGRL N   LM    K+  V K++DP APH V+ VLDAT+GQN + QV
Sbjct: 181 IANNFDQVLIDTAGRLQNKKNLMEEYKKIANVTKKMDPEAPHDVILVLDATSGQNVINQV 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F+ +   TGLIMTK+DGTA+GG L+ +    K+P+  LG+GE  +DL+ F A+ F+  
Sbjct: 241 EEFNKIIPITGLIMTKLDGTAKGGILLAVAKKFKLPIIALGLGEKEDDLQIFEAEKFAEA 300


>gi|295099734|emb|CBK88823.1| signal recognition particle-docking protein FtsY [Eubacterium
           cylindroides T2-87]
          Length = 321

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 106/322 (32%), Positives = 163/322 (50%), Gaps = 15/322 (4%)

Query: 11  LSWIRKLTK-------------GFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRS 56
           +++ +K+ +             G   +     + +  + ++   ++D + EE+  +L+ S
Sbjct: 1   MAFFQKIKEAFIKNEDKDKYLSGLDRSKKSFGDRLRALSNNFHGINDELLEEIMVILLES 60

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           D+G+  AQKIV+                 Y +S L          P N++    P VIL+
Sbjct: 61  DVGIHTAQKIVDAFEPNAKDLKNYDSMEDYLISILYDFYDEEQDAPINYN-EDGPTVILM 119

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT   KL +        V + A DTFR+ AIDQ+  WA+R     +  +   
Sbjct: 120 VGVNGSGKTTTSAKLIRHYLQQQKSVAVVAADTFRAGAIDQIDTWANRLGVPCIKGKPNQ 179

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D +++  +  + A+   VD+LI DTAGRL N + LM  + KM RV+ +     PH V  V
Sbjct: 180 DPSSVIVDGCRYAKEHNVDILICDTAGRLQNKTNLMNELSKMRRVVSKEIEGGPHEVWLV 239

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q ++F      +G+++TKMDGTA+GG ++ I     +PV FLG+GE   
Sbjct: 240 LDATTGQNGISQAKIFLEATDVSGIVLTKMDGTAKGGVVLAIRDLLHLPVRFLGLGEKPE 299

Query: 297 DLEPFVAKDFSAVITGCLDYGE 318
           DL+ F    F   IT  +D  E
Sbjct: 300 DLKSFDINAFLMGITKGMDADE 321


>gi|86137223|ref|ZP_01055801.1| signal recognition particle protein [Roseobacter sp. MED193]
 gi|85826547|gb|EAQ46744.1| signal recognition particle protein [Roseobacter sp. MED193]
          Length = 509

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  V+++  +   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFVKKVQEQATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + + ++L            + P  IL+VG+ G GKTT  GKL
Sbjct: 62  QSVTKSVTPGQQVVKIVHDALVEVLRGNEDLGTLKVDNPPAPILMVGLQGSGKTTTTGKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ D  G +V++A+ D +R AA+DQL +   +   D +    G     +A  A +QA 
Sbjct: 122 AKRLKDKEGKRVLMASLDVYRPAAMDQLAVLGAQIGVDTLPIVAGQKPVDIAKRAKQQAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  + +LM  +  +  V+       P   L V+D  TGQ A+   E
Sbjct: 182 LGGYDVYMLDTAGRLQIDEVLMQEVEDVRDVVS------PRETLLVVDGLTGQVAVEVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A  G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ +E F  +  +  I
Sbjct: 236 EFDAKIGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDAIETFEPERVAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|120612515|ref|YP_972193.1| signal recognition particle-docking protein FtsY [Acidovorax
           citrulli AAC00-1]
 gi|120590979|gb|ABM34419.1| signal recognition particle-docking protein FtsY [Acidovorax
           citrulli AAC00-1]
          Length = 305

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 121/309 (39%), Positives = 182/309 (58%), Gaps = 7/309 (2%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+   E   W+ +L  G   T       I  + +  ++ D + +ELE+ L+ +D GV   
Sbjct: 2   QEAGQERKGWLDRLKNGLRKT----GTSIATVFTGTQISDALYDELEEALLMADTGVKAT 57

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           + ++++L  +      +    +   +++ +  +L PL KP      H P VI+V GVNG 
Sbjct: 58  EHLLQDLRRRVKESKATDPAAVKGLLADALADLLRPLEKPLEIG-RHTPTVIMVAGVNGA 116

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL++ ++  G  V+LAA DTFR+AA +QL +WADR + + V S+ G D AA++
Sbjct: 117 GKTTSIGKLTRHLATEGAAVLLAAADTFRAAAREQLGVWADRNTVEIV-SQEGGDPAAVS 175

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A    +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TG
Sbjct: 176 FDAVSAGKARGKDVVLVDTAGRLPTQLHLMQELQKIKRVITKADGTAPHEVLLVIDGNTG 235

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL QV  F      TGL++TK+DGTA+GG L  I     IPVYF+GVGE + DLE F 
Sbjct: 236 QNALAQVRAFDDALQLTGLVVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKLEDLETFS 295

Query: 303 AKDFSAVIT 311
           A++F+  + 
Sbjct: 296 AREFAQALL 304


>gi|260063511|ref|YP_003196591.1| signal recognition particle-docking protein FtsY [Robiginitalea
           biformata HTCC2501]
 gi|88782955|gb|EAR14129.1| signal recognition particle-docking protein FtsY [Robiginitalea
           biformata HTCC2501]
          Length = 320

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 118/313 (37%), Positives = 176/313 (56%), Gaps = 15/313 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S  +K         L KG   +       +   ++   ++DD V + LE++L+ SD+GV
Sbjct: 1   MSLFKKIFSSEKKETLDKGLEKSKTSFFSKLGKAVVGKSKVDDEVLDNLEEVLVTSDVGV 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVIL 115
               KI+  +  +    K V    +   + E I  +L       +   +      P+V++
Sbjct: 61  ETTLKIIGRIEERVARDKYVGTDELDRILREEIAGLLEETHSGEAAEVSLPEVEGPYVVM 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT IGKL+ + +  G KV+L A DTFR+AAI+QL+IWA+R     V   +G
Sbjct: 121 VVGVNGVGKTTTIGKLAHQFNQQGKKVILGAADTFRAAAIEQLEIWAERVGVPIVKQRMG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++A++    A  ++ D+++IDTAGRLHN   LM  + K+ RV++++ P APH VL 
Sbjct: 181 SDPASVAFDTLSSAVGQQADIVLIDTAGRLHNKVNLMNELTKVRRVMQKVIPGAPHEVLL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNA  Q   F        L +TK+DGTA+GG +I I     IPV ++GVGEG+
Sbjct: 241 VLDGSTGQNAFEQARQFTRATEVNSLAVTKLDGTAKGGVVIGISDQFGIPVKYIGVGEGV 300

Query: 296 NDLEPFVAKDFSA 308
            DL+ F   +F  
Sbjct: 301 EDLQVFNKYEFVD 313


>gi|241890123|ref|ZP_04777421.1| signal recognition particle-docking protein FtsY [Gemella
           haemolysans ATCC 10379]
 gi|241863745|gb|EER68129.1| signal recognition particle-docking protein FtsY [Gemella
           haemolysans ATCC 10379]
          Length = 353

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 127/312 (40%), Positives = 185/312 (59%), Gaps = 9/312 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   +       + ++ISS R +++   E+LE+LLI+SD+      ++V+ L  +
Sbjct: 39  EKFKKGLKKSRDNFSNALNNLISSYREINEEFFEDLEELLIQSDVSYNTVLELVDYLKVE 98

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              +++     L    + +L+   +    K   N+       V L VGVNGVGKTT IGK
Sbjct: 99  SQRQNLKEPSELQSMIIEKLVDVYMEGTVKSELNYAPEKELSVFLFVGVNGVGKTTSIGK 158

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G KV++AAGDTFR+ AIDQL +WA R+ AD V S  G+D+AA+ ++A + A+
Sbjct: 159 LAHNLKKEGKKVLIAAGDTFRAGAIDQLDVWAKRSGADIVKSHEGADSAAIIFDAIQSAK 218

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DVL+ DTAGRL N   LM  + K++RV+K+  P  PH VL  +DATTGQN + Q +
Sbjct: 219 AKGYDVLLCDTAGRLQNKDHLMKELEKIVRVIKKEVPEGPHEVLLTIDATTGQNGILQAK 278

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F  V+  TG+I+TK+DGTA+GG +I I     IPV  +G+GE I+DLE F  + +   I
Sbjct: 279 TFKEVSDVTGVILTKLDGTAKGGIVIAIKKELGIPVKLVGLGENIDDLEVFDPEQY---I 335

Query: 311 TGCL--DYGEEK 320
            G    D  E+K
Sbjct: 336 YGLFYQDNTEQK 347


>gi|256824941|ref|YP_003148901.1| signal recognition particle-docking protein FtsY [Kytococcus
           sedentarius DSM 20547]
 gi|256688334|gb|ACV06136.1| signal recognition particle-docking protein FtsY [Kytococcus
           sedentarius DSM 20547]
          Length = 480

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 110/311 (35%), Positives = 184/311 (59%), Gaps = 6/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    +   + +L    + ++  + + +  +++S  LD+   EE+ED L+ SD+GV    
Sbjct: 171 EAPPSADGRLVRLRARLSRSNNAVGQALLKLLTSGDLDEAAWEEVEDTLLASDLGVEATT 230

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNG 121
           ++V+ L  +   ++ +   ++   + E + +++ P  +        + RP V+LVVGVNG
Sbjct: 231 ELVDNLRKRVQVENTTDPELVRGWLREELVRLVDPTMERGIAATRQNGRPSVVLVVGVNG 290

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT +GK+++ +      V+L A DTFR+AA DQL+ W +R     V SE  G+D A+
Sbjct: 291 TGKTTTVGKIARVLVAEDKDVVLGAADTFRAAAADQLQTWGERVGVRTVRSEKEGADPAS 350

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++A ++    + DV+++DTAGRLHN + LM  + K+ RV+++        VL VLDAT
Sbjct: 351 VAFDAVREGLESEADVVLLDTAGRLHNKAGLMDELAKVKRVVEKR--SQIDEVLLVLDAT 408

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN ++Q E+F      TG+++TKMDGTARGG ++ +     +PV  +G+GEG +DL P
Sbjct: 409 TGQNGMKQAEVFSQAVDVTGIVLTKMDGTARGGIVVAVQRALGVPVKLVGLGEGADDLAP 468

Query: 301 FVAKDFSAVIT 311
           FVA DF   + 
Sbjct: 469 FVATDFVDALL 479


>gi|298345306|ref|YP_003717993.1| FtsY signal recognition particle [Mobiluncus curtisii ATCC 43063]
 gi|298235367|gb|ADI66499.1| FtsY signal recognition particle [Mobiluncus curtisii ATCC 43063]
          Length = 596

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 176/312 (56%), Gaps = 10/312 (3%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
                S + +L +  A    K    I +++S+  L++   E +ED L+ +D+GV    ++
Sbjct: 286 PESKTSRLHRLKERLAG-KGKFGRAILNVLSNADLEESDWEAIEDELLAADLGVEPTVEL 344

Query: 67  VEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSK-----PFNWDFSHRPHVILVVGVN 120
           + +L  K+          +  +++ ++  ML   ++         D   +   IL+VGVN
Sbjct: 345 IGKLKVKQKVAGEKDATQVRRMAKRMLTDMLDRKAERRLNLEVPEDSPTQTAGILLVGVN 404

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           G GKTT +GKL++ +      V+L A DTFR+AA +QL+ W DR     V +E    D A
Sbjct: 405 GGGKTTTVGKLARLLVAERKTVVLGAADTFRAAAGEQLQTWGDRVGVPVVRAEKDQADPA 464

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A K A+    DV++IDTAGRL N   LM  +GK+ RV ++  P     VL V+DA
Sbjct: 465 SVAFDAAKAAREAGSDVVVIDTAGRLQNKVGLMDELGKIKRVAEKQVP--ITEVLLVIDA 522

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q ++F    G TG+++TK+DG+A+GG ++P+     IPV  +G+GEG +DL 
Sbjct: 523 TTGQNALSQAKIFTEAVGVTGIVLTKLDGSAKGGVIVPLQRELGIPVKLVGLGEGPDDLA 582

Query: 300 PFVAKDFSAVIT 311
           PFV  DF+  + 
Sbjct: 583 PFVPGDFADALL 594


>gi|313896550|ref|ZP_07830099.1| signal recognition particle-docking protein FtsY [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312974735|gb|EFR40201.1| signal recognition particle-docking protein FtsY [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 312

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 130/303 (42%), Positives = 184/303 (60%), Gaps = 3/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L KG + T   L   I   II    +DD + +ELE+ L+ +D+GV   + ++  
Sbjct: 1   MGFFDRLKKGLSKTRENLTHNIERLIIGYADIDDDLIDELEETLLMADVGVKTTETLIAA 60

Query: 70  LLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +      K++     L    E  I ++L      F    +  P V+LVVG NGVGKTT I
Sbjct: 61  VRKGIKQKEIRSPEDLIPFMEKEIVRILEEGDDTFRM-AAQEPTVLLVVGTNGVGKTTTI 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS   S  G  V+LAA DTFR+AAIDQL+IW +RT+A  V    GSD AA+ ++A + 
Sbjct: 120 GKLSAYYSRQGKTVLLAAADTFRAAAIDQLEIWGNRTNAQVVKHAEGSDPAAVVFDAMQA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ VD++I+DTAGRL   S LM  + K+ RV+ R  P APH  L VLDA TGQNA+ Q
Sbjct: 180 AKARGVDIVIVDTAGRLQTKSNLMQELEKIYRVIGREIPGAPHETLLVLDAGTGQNAISQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E+F   A  +G+++TK+DGTA+GG  I I     IP+ ++GVGEG++DL PF A+DF +
Sbjct: 240 AELFTKAAPVSGVVLTKLDGTAKGGVTIGIKSQLSIPIKWIGVGEGVDDLRPFRAEDFVS 299

Query: 309 VIT 311
            + 
Sbjct: 300 ALF 302


>gi|329767266|ref|ZP_08258793.1| hypothetical protein HMPREF0428_00490 [Gemella haemolysans M341]
 gi|328836933|gb|EGF86580.1| hypothetical protein HMPREF0428_00490 [Gemella haemolysans M341]
          Length = 354

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 122/297 (41%), Positives = 179/297 (60%), Gaps = 4/297 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   +       + ++ISS R +++   E+LE+LLI+SD+      ++V+ L  +
Sbjct: 39  EKFKKGLKKSRDNFSNALNNLISSYREINEEFFEDLEELLIQSDVSYNTVLELVDYLKVE 98

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              +++     L    + +L+   +    K   N+       V L VGVNGVGKTT IGK
Sbjct: 99  SQRQNLKEPSELQSMIIEKLVDVYMEGTVKSELNYAPEKELSVFLFVGVNGVGKTTSIGK 158

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G KV++AAGDTFR+ AIDQL +WA R+ AD V S  G+D+AA+ ++A + A+
Sbjct: 159 LAHNLKKEGKKVLIAAGDTFRAGAIDQLDVWAKRSGADIVKSHEGADSAAIIFDAIQSAK 218

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DVL+ DTAGRL N   LM  + K++RV+K+  P  PH VL  +DATTGQN + Q +
Sbjct: 219 AKGYDVLLCDTAGRLQNKDHLMKELEKIVRVIKKEVPEGPHEVLLTIDATTGQNGILQAK 278

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            F  V+  TG+I+TK+DGTA+GG +I I     IPV  +G+GE I+DLE F  + + 
Sbjct: 279 TFKEVSDVTGVILTKLDGTAKGGIVIAIKKELGIPVKLVGLGENIDDLEVFDPEQYI 335


>gi|170781181|ref|YP_001709513.1| signal recognition particle receptor [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155749|emb|CAQ00870.1| signal recognition particle receptor [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 291

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 114/293 (38%), Positives = 164/293 (55%), Gaps = 6/293 (2%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           A T   L   +  + +   +D+   ++LE  LI +D G  V +  +++L  K      + 
Sbjct: 3   ARTPWSLSGALRGMFAKPTIDETTWDDLETALITADFGPDVTEATIDDLREKVERYRTTD 62

Query: 82  QRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            R L   + E I + L           S RP VILVVGVNGVGKTT IGK +K + + G 
Sbjct: 63  PRDLQRMLRESIEERLAKHDP--TLKLSARPAVILVVGVNGVGKTTTIGKFAKFLRNYGR 120

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             ++ A DTFR+AA+DQL  WADR  A+ V   + G D A++A++  + A     +++II
Sbjct: 121 TAVVGAADTFRAAAVDQLATWADRAGAEIVRPQQPGQDPASVAFQTVEHAMRTGTEMVII 180

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH    LM  + K+ RV+++  P A   VL VLDATTGQN L Q + F    G T
Sbjct: 181 DTAGRLHTKGGLMDELSKIRRVVEKQSPIA--EVLLVLDATTGQNGLAQAQAFIEHGGVT 238

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           GL++TK+DG+A+GG ++ +     IP+  +G GEGI DL  F    F+  + G
Sbjct: 239 GLVITKLDGSAKGGFILNVQERTGIPIKLIGQGEGIGDLTGFTPHVFAQNLVG 291


>gi|149692833|ref|XP_001491096.1| PREDICTED: signal recognition particle 54kDa isoform 2 [Equus
           caballus]
          Length = 513

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|94993890|ref|YP_601988.1| cell division protein ftsY [Streptococcus pyogenes MGAS10750]
 gi|94547398|gb|ABF37444.1| Cell division protein ftsY [Streptococcus pyogenes MGAS10750]
          Length = 516

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 169/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRTGFSARLNSFFANFRRVDEEFFEDLEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    V +L+             ++     V+L VGVNGVGKTT IGKL
Sbjct: 273 AKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAINYQDGLTVMLFVGVNGVGKTTSIGKL 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 333 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGMEKAVA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 393 KGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLPDAPHETLLALDASTGQNALSQAKE 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   + 
Sbjct: 453 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKVDDIGEFHSEDFMKGLL 512


>gi|87199425|ref|YP_496682.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135106|gb|ABD25848.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 491

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 149/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVR---EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L ++ V     E+   L+ +D+ + V ++ ++++  +   
Sbjct: 2   FDSLSDRLGGVFERLRGRGALREEDVLAAMREVRIALLEADVALPVVRRFIDQVSEQAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q+V+  V++ +  ML   +   + + +  P VI++VG+ G GKTT   K+
Sbjct: 62  QSVLKSVTPGQQVVKIVNDALVDMLGGGTAELDLNAA-PPVVIMMVGLQGSGKTTSTAKI 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +    G KV++A+ D  R AA +QL +  ++     +    G     +A  A   A+
Sbjct: 121 GKLLKEKQGKKVLMASLDVNRPAAQEQLAVLGEQAGVATLPIVAGQQPVDIATRAVNAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VDVL++DTAGRLH +  LM  +  +  V        P   L V+D+ TGQ+A+   +
Sbjct: 181 LQAVDVLLLDTAGRLHVDQALMDEMKAVAAV------SVPRETLLVVDSLTGQDAVNVAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++T+MDG ARGG  + +      P+ F   GE ++ +EPF  +  +  I
Sbjct: 235 SFSGEVDLTGVVLTRMDGDARGGAALSMRAVTGKPIKFAATGEKLDAIEPFHPERVAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|73668456|ref|YP_304471.1| signal recognition particle protein Srp54 [Methanosarcina barkeri
           str. Fusaro]
 gi|121731303|sp|Q46E01|SRP54_METBF RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|72395618|gb|AAZ69891.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanosarcina barkeri str. Fusaro]
          Length = 443

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 149/304 (49%), Gaps = 22/304 (7%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVA----QKIVEELLTK 73
                 L+  +  +I + R+D+     V ++++  L+++D+ V +     Q+I E  + +
Sbjct: 4   EKLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKE 63

Query: 74  RYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
                ++ +  +   V + + +++   ++        +P +I++VG+ G GKTT   KL+
Sbjct: 64  APPAGMNPREHVIRIVYQELMEIIGKGAE-----IQLKPQIIMMVGLQGSGKTTSTAKLA 118

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +     GLK  + A DTFR  A  QLK   ++ +  F   E   DA  +     K  +  
Sbjct: 119 RYFQRKGLKAGVVAADTFRPGAYHQLKTLCEKLNVAFYGEENNPDAVEITRNGLKALE-- 176

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K DV I+DTAGR    + L+  + ++  V K      P     VLDA  GQ A +Q   F
Sbjct: 177 KYDVKIVDTAGRHALEADLIEEMEQINAVAK------PDHKFMVLDAGIGQQASQQAHAF 230

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +   G TG+I+TK+DGTA+GGG +  V   K P+ F+GVGE   D E F A  F + + G
Sbjct: 231 NDSVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLG 290

Query: 313 CLDY 316
             D 
Sbjct: 291 MGDL 294


>gi|119386585|ref|YP_917640.1| signal recognition particle protein [Paracoccus denitrificans
           PD1222]
 gi|119377180|gb|ABL71944.1| signal recognition particle subunit FFH/SRP54 (srp54) [Paracoccus
           denitrificans PD1222]
          Length = 498

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  V+ +  K   
Sbjct: 2   FENLSDRLGGVFDRLTKQGALSEDDVAAAMREVRVALLEADVSLPVARNFVKAVTQKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V+      Q+V+  V + + K+L     P      + P  IL+VG+ G GKTT   KL
Sbjct: 62  AAVTKSITPGQQVVKIVHDELIKVLQGEGAPDALRIDNPPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      +V++A+ DT R AA++QL I   +   D +    G +A  +A  A +QA 
Sbjct: 122 AKRLKDREKKRVLMASLDTNRPAAMEQLAILGQQIGVDTLPIVPGENAVQIAKRAKQQAT 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH + +LM  +  +       D  +P   L V+D  TGQ+A+    
Sbjct: 182 LGGYDVYMLDTAGRLHIDEVLMDEVQAV------RDVASPRETLLVVDGLTGQDAVNVAA 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F A+  +  I
Sbjct: 236 EFDGKVGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALEAFDAQRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|71903119|ref|YP_279922.1| cell division protein [Streptococcus pyogenes MGAS6180]
 gi|71802214|gb|AAX71567.1| cell division protein [Streptococcus pyogenes MGAS6180]
          Length = 516

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 169/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRTGFSARLNSFFANFRRVDEEFFEDLEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    V +L+             ++     V+L VGVNGVGKTT IGKL
Sbjct: 273 AKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAINYQDGLTVMLFVGVNGVGKTTSIGKL 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 333 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGMEKAVA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 393 KGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLPDAPHETLLALDASTGQNALSQAKE 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   + 
Sbjct: 453 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKVDDIGEFHSEDFMKGLL 512


>gi|290580784|ref|YP_003485176.1| putative cell division protein [Streptococcus mutans NN2025]
 gi|254997683|dbj|BAH88284.1| putative cell division protein [Streptococcus mutans NN2025]
          Length = 498

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 120/313 (38%), Positives = 174/313 (55%), Gaps = 3/313 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           ++ ++A    S   K  +    T       +   +++ R +D+   E+LE++LI SD+GV
Sbjct: 182 ASSQIAESVESEEEKYNRSLKKTRTGFGARLNAFLANFRNVDEEFFEDLEEMLILSDVGV 241

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            VA  + E+L  +   +       L    + +L+             +F +   V+L VG
Sbjct: 242 QVASTLTEDLRYEAKLEKAKKPEALRRVIIEKLVDIYDKDGQFNEKINFQNDLTVMLFVG 301

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     +D 
Sbjct: 302 VNGVGKTTSIGKLAYKYKHQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPKNADP 361

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+  ++A A  VD+L+IDTAGRL N   LMA + K+ RV+KR+ P APH  L  LD
Sbjct: 362 ASVVYDGVERAVAADVDILMIDTAGRLQNKDNLMAELEKIGRVVKRVIPDAPHETLLTLD 421

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+
Sbjct: 422 ASTGQNALVQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELAIPVKFIGFGEKIDDI 481

Query: 299 EPFVAKDFSAVIT 311
             F ++DF   + 
Sbjct: 482 GEFHSEDFMRGLL 494


>gi|329847289|ref|ZP_08262317.1| signal recognition particle protein [Asticcacaulis biprosthecum
           C19]
 gi|328842352|gb|EGF91921.1| signal recognition particle protein [Asticcacaulis biprosthecum
           C19]
          Length = 521

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 156/310 (50%), Gaps = 17/310 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L +  +    +L      ++S + +D+ +RE +   L+ +D+ + V ++ + +   
Sbjct: 1   MFDSLNERLSGLFDRLSG--RGVLSEKDVDEALRE-VRVALLEADVALPVVRQFMTKAKE 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTT 126
               +++        +V+  V + +  ML     +P N +    P VI++ G+ G GKTT
Sbjct: 58  LATGEEIIKAVKPADQVVKIVYDGLIDMLGGEEPEPLNLNAV-PPAVIMMAGLQGSGKTT 116

Query: 127 VIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
              KL+ ++      KVM+A+ DT R AA++QLK+ A++   DF+    G  A  +A  A
Sbjct: 117 TSAKLALRLSKFDRKKVMMASLDTRRPAAMEQLKLLAEQVGVDFLPIVAGQSATDIARRA 176

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+ +  DVLI+DTAGR   +  LM+   ++ R+        P     V D+ TGQ+A
Sbjct: 177 LQAAKIQGFDVLILDTAGRTTLDEALMSEAAEIARIAN------PIETFLVADSLTGQDA 230

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +R    FH     TGLI+T+ DG ARGG ++ +     +P+ FLG GE +  L+ F A+ 
Sbjct: 231 VRTATAFHERLPLTGLILTRADGDARGGAMLSMRAVTGLPIKFLGAGEKVEALDVFDARR 290

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 291 VAGRILGQGD 300


>gi|320333784|ref|YP_004170495.1| signal recognition particle protein [Deinococcus maricopensis DSM
           21211]
 gi|319755073|gb|ADV66830.1| signal recognition particle protein [Deinococcus maricopensis DSM
           21211]
          Length = 449

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 143/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   KL++ +  +    +L +        E+   L+ +D+  +VA+  V  +  K   
Sbjct: 4   FESLGNKLQDILDKLRHESKLTEAQVKAAMREIRMALLEADVNFSVAKDFVARVTEKAVG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V     + Q V+  V++ + + L   +K          ++  +VG+ G GKTT  GKL
Sbjct: 64  QEVMGSLNAGQMVVKIVNDELIETLGGQAKQPTLKNEG--NIFFMVGLQGAGKTTSTGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G +V+L A DT R AA DQLKI   +     +    G   A    +     Q+
Sbjct: 122 AQYYKSKGRRVLLVAADTQRPAARDQLKILGQQVGVPVLEVANGETPAETKRKLEAHLQS 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRL  +  LM  +  +   L       P   L V+DA TGQ AL   E 
Sbjct: 182 DYRDLIIVDTAGRLQIDEALMDQLADLKGALS------PTETLLVVDAMTGQEALNVAET 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F +  G +GLI+TKMDG ARGG  +        P+YF GV E ++ LEPF     +  I 
Sbjct: 236 FESRIGLSGLIITKMDGDARGGAALSARFVTGKPIYFAGVSEKLSGLEPFYPDRVAGRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|91772216|ref|YP_564908.1| signal recognition particle protein Srp54 [Methanococcoides
           burtonii DSM 6242]
 gi|121686981|sp|Q12ZG8|SRP54_METBU RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|91711231|gb|ABE51158.1| signal recognition particle SRP54 [Methanococcoides burtonii DSM
           6242]
          Length = 439

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 146/299 (48%), Gaps = 14/299 (4%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
                 L++ +  ++ + R+D+     V ++++  L+++D+ V +  ++   +  +   +
Sbjct: 4   DKLGSSLQDALKKLVGAGRIDEKTVTEVVKDIQRALLQADVNVKLVMQMSSHIKERALKE 63

Query: 78  DVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +V       + V +++++ L+ +    + D   +P  I+++G+ G GKTT   KLS+   
Sbjct: 64  EVPPGMNPREHVIKIVYQELISIVGR-SADIPLKPQTIMMIGLQGSGKTTTTSKLSRYFQ 122

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             GLK  +   DTFR  A  QLK   D+ +  F       DA  +       A+  K DV
Sbjct: 123 RKGLKPAVICADTFRPGAYQQLKTLCDKLNVPFYGEVGNPDAVGIVERGL--AELGKNDV 180

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           LI+DTAGR    + L+  + ++  +        P   L VLD   GQ A  Q   F+   
Sbjct: 181 LIVDTAGRHSLEADLIDEMEQIHEI------AQPDYKLLVLDGAIGQQASEQARAFNDSV 234

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +G++++K+DGTA+GGG +  V      + F+GVGE  +DLE F    F + + G  D
Sbjct: 235 GISGVVISKLDGTAKGGGALSAVSETNSAIAFIGVGETPDDLEKFEPDRFISRLLGMGD 293


>gi|323954782|gb|EGB50563.1| signal recognition particle-docking protein FtsY [Escherichia coli
           H263]
          Length = 259

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 109/252 (43%), Positives = 161/252 (63%), Gaps = 2/252 (0%)

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           K++  L      K +     LY  + E + ++L  + +P N +    P VIL+VGVNGVG
Sbjct: 9   KLITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVE-GKTPFVILMVGVNGVG 67

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ +
Sbjct: 68  KTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIF 127

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQ
Sbjct: 128 DAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 187

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N + Q ++FH   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A
Sbjct: 188 NGVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKA 247

Query: 304 KDFSAVITGCLD 315
            DF   +    D
Sbjct: 248 DDFIEALFARED 259


>gi|303283296|ref|XP_003060939.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
 gi|226457290|gb|EEH54589.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
          Length = 340

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 115/317 (36%), Positives = 170/317 (53%), Gaps = 13/317 (4%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIGVAVA 63
           +A ++ +   ++ KG + T  KL   + +++S  RL+D     +ELE++LI  D G   A
Sbjct: 25  LAKKTQADFDRVFKGTSKTREKLSY-MDEMLSLWRLEDVEETLDELEEVLISVDFGPTTA 83

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKML------MPLSKPFNWDFSHRPHVILV 116
             ++E +  +    ++S    +   +   I  +L       P   P        P VI+V
Sbjct: 84  MDVIEVVRERVEKGEISTGPQVKQALKTAIVDILQRPNGGEPGCAPLALS-EEAPTVIMV 142

Query: 117 VGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VGVNG GKTT +GKLS + +   G KVML  GDTFR+AA +QL  WA+R+       + G
Sbjct: 143 VGVNGAGKTTTLGKLSNRFALESGAKVMLVPGDTFRAAAAEQLATWAERSDGVMATYKEG 202

Query: 176 SDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
               A+ Y+A ++A     VD+++ DT+GRLH N  LM  +  + R + +    APH  L
Sbjct: 203 MKPGAVCYQAVQEAIKMGDVDIVLADTSGRLHTNCDLMDELAGVRRSITKSLASAPHETL 262

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLD T+G N L Q   F      TGLI+TK+DGTARGG ++ +V    IPV F+GVGE 
Sbjct: 263 LVLDGTSGLNMLNQARAFSEAVDVTGLILTKLDGTARGGAVVSVVNEMNIPVKFVGVGEK 322

Query: 295 INDLEPFVAKDFSAVIT 311
           + DL+ F  + F   I 
Sbjct: 323 MEDLQTFEPESFVDAIF 339


>gi|269977120|ref|ZP_06184094.1| signal recognition particle protein [Mobiluncus mulieris 28-1]
 gi|269934951|gb|EEZ91511.1| signal recognition particle protein [Mobiluncus mulieris 28-1]
          Length = 524

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 141/309 (45%), Gaps = 19/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F     ++ +    +    +L +   +    E+   L+ +D+ + V +    ++  K Y 
Sbjct: 2   FNKLQDRIADSFKHLRKKGKLSETDVDQTVGEIRRALLEADVALEVVKDFTAQVKEKAYG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGK 130
              S      Q+++  +++ + ++L   ++  ++      P V ++VG+ G GKTT+ GK
Sbjct: 62  AARSEALNPAQQIVKIINDELVEILGGEARELHFVKPGKGPTVFMLVGLQGAGKTTLAGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L K +     K +L A D  R  A+ QL+I  ++        E G+   D   +A     
Sbjct: 122 LGKWLGKQDKKTLLVAADLQRPNAVTQLQIVGEQAGVSVFAPEPGNGVGDPVDVARRGLA 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A     DV+I+DTAGRL  +  LMA    +       D   P  VL VLDA  GQ+A+R
Sbjct: 182 LATGSGYDVMIVDTAGRLGVDEKLMAQARAI------RDEVQPEEVLFVLDAMIGQDAVR 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F      TG++++K+DG ARGG  + +      PV F   GEG++D E F A   +
Sbjct: 236 TARAFQEGVDFTGVVLSKLDGDARGGAALSVRGVTGKPVLFASTGEGLDDFERFHADRMA 295

Query: 308 AVITGCLDY 316
           + I    D 
Sbjct: 296 SRILDMGDM 304


>gi|15674659|ref|NP_268833.1| putative signal recognition particle [Streptococcus pyogenes M1
           GAS]
 gi|50913842|ref|YP_059814.1| cell division protein ftsY [Streptococcus pyogenes MGAS10394]
 gi|71910285|ref|YP_281835.1| cell division protein [Streptococcus pyogenes MGAS5005]
 gi|13621775|gb|AAK33554.1| putative signal recognition particle (docking protein)
           [Streptococcus pyogenes M1 GAS]
 gi|50902916|gb|AAT86631.1| Cell division protein ftsY [Streptococcus pyogenes MGAS10394]
 gi|71853067|gb|AAZ51090.1| cell division protein [Streptococcus pyogenes MGAS5005]
          Length = 516

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 169/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRTGFSARLNSFFANFRRVDEEFFEDLEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    V +L+             ++     V+L VGVNGVGKTT IGKL
Sbjct: 273 AKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAINYQDGLTVMLFVGVNGVGKTTSIGKL 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 333 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGMEKAVA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 393 KGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLPDAPHETLLALDASTGQNALSQAKE 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   + 
Sbjct: 453 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKVDDIGEFHSEDFMKGLL 512


>gi|21909937|ref|NP_664205.1| putative signal recognition particle-docking protein FtsY
           [Streptococcus pyogenes MGAS315]
 gi|21904125|gb|AAM79008.1| putative signal recognition particle-docking protein FtsY
           [Streptococcus pyogenes MGAS315]
          Length = 516

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 169/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRTGFSARLNSFFANFRRVDEEFFEDLEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    V +L+             ++     V+L VGVNGVGKTT IGKL
Sbjct: 273 AKLENAKKPDALKRVIVEKLVDIYEKDGHYNEAINYQDGLTVMLFVGVNGVGKTTSIGKL 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 333 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGMEKAVA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 393 KGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLPDAPHETLLALDASTGQNALSQAKE 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   + 
Sbjct: 453 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKVDDIGEFHSEDFMKGLL 512


>gi|310828469|ref|YP_003960826.1| signal recognition particle protein [Eubacterium limosum KIST612]
 gi|308740203|gb|ADO37863.1| signal recognition particle protein [Eubacterium limosum KIST612]
          Length = 448

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + K +   +++    +L +   +    E++  L+ +D+   V ++  + +  +   
Sbjct: 3   FEGLNEKFQNIFSNLKRKGKLSEEDIKAASREIKLALLEADVNFKVVKQFTKAVSERAVG 62

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V++ + K+L    +   +      ++ ++VG+ G GKTT   K+
Sbjct: 63  EEVLKSLTPGQQFIKIVNDEMTKLLGGELQKMEF-VEQGINIFMMVGLQGAGKTTTAAKI 121

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +  +   K +L A D +R AAIDQL+I           ++   D   +A +A + A+
Sbjct: 122 ANLLRKEKKFKPLLVACDVYRPAAIDQLEILGKELDIPVYLNKDEKDPRVIAKKALEFAE 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  +++IIDTAGRL  +  LM  +  +  +L+      P  +L V+D  TGQ ++   +
Sbjct: 182 TEGYNLMIIDTAGRLQIDETLMNELVDLKELLE------PTEILLVVDGMTGQESVNVAD 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+++TK+DG  RGG  + +  T    + ++G GE + D+E F     +  I
Sbjct: 236 EFNRQLEITGVVLTKLDGDTRGGAALSVTYTTGKTIKYIGTGEKLTDIELFYPDRMANRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|24379207|ref|NP_721162.1| putative cell division protein FtsY; signal recognition particle
           (docking protein) [Streptococcus mutans UA159]
 gi|24377118|gb|AAN58468.1|AE014916_9 putative cell division protein FtsY; signal recognition particle
           (docking protein) [Streptococcus mutans UA159]
          Length = 498

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 120/313 (38%), Positives = 174/313 (55%), Gaps = 3/313 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           ++ ++A    S   K  +    T       +   +++ R +D+   E+LE++LI SD+GV
Sbjct: 182 ASSQIAESVESEEEKYNRSLKKTRTGFGARLNAFLANFRNVDEEFFEDLEEMLILSDVGV 241

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            VA  + E+L  +   +       L    + +L+             +F +   V+L VG
Sbjct: 242 QVASTLTEDLRYEAKLEKAKKPEALRRVIIEKLVDIYDKDGQFNEKINFQNDLTVMLFVG 301

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     +D 
Sbjct: 302 VNGVGKTTSIGKLAYKYKHQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPKNADP 361

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+  ++A A  VD+L+IDTAGRL N   LMA + K+ RV+KR+ P APH  L  LD
Sbjct: 362 ASVVYDGVERAVAADVDILMIDTAGRLQNKDNLMAELEKIGRVVKRVIPDAPHETLLTLD 421

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+
Sbjct: 422 ASTGQNALVQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELAIPVKFIGFGEKIDDI 481

Query: 299 EPFVAKDFSAVIT 311
             F ++DF   + 
Sbjct: 482 GEFHSEDFMRGLL 494


>gi|124007453|ref|ZP_01692159.1| signal recognition particle protein [Microscilla marina ATCC 23134]
 gi|123987109|gb|EAY26858.1| signal recognition particle protein [Microscilla marina ATCC 23134]
          Length = 445

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/308 (25%), Positives = 148/308 (48%), Gaps = 18/308 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F++ S ++ + + ++    R+ +       +E+   L+ +D+   VA+++ +E+  +   
Sbjct: 2   FSTLSQRIDKAVKNLKGKGRITEINVATTVKEIRRALVDADVNYKVAKQVTDEIKEEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V E +  ++    +  N +    P V+L+ G+ G GKTT  GKL
Sbjct: 62  RKVLINVEPGQLLVKIVHEKLTALMGGEEEEINIEGD--PAVVLMSGLQGSGKTTFSGKL 119

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      KV+L A D +R AAI+QL++  ++   +        +  +++  A K A+
Sbjct: 120 ANFINKKRNKKVLLVACDVYRPAAINQLQVVGEQIGVEVYAEPENKNPVSISQNAIKYAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
                V+I+DTAGRL  +  +M  I  +   +K      P   L V+D+ TGQ+A+   +
Sbjct: 180 ENNHKVVIVDTAGRLAVDEEMMKEIEDVKNAIK------PSETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F G GE ++ +  F  +  +  I
Sbjct: 234 TFNERINFDGVVLTKLDGDTRGGAALSIRAVVNKPIKFTGTGEKMDAINVFRPEGMAGRI 293

Query: 311 TGCLDYGE 318
               D  +
Sbjct: 294 LDMGDIVD 301


>gi|306819255|ref|ZP_07452966.1| signal recognition particle protein [Mobiluncus mulieris ATCC
           35239]
 gi|307700138|ref|ZP_07637184.1| signal recognition particle protein [Mobiluncus mulieris FB024-16]
 gi|304648037|gb|EFM45351.1| signal recognition particle protein [Mobiluncus mulieris ATCC
           35239]
 gi|307614687|gb|EFN93910.1| signal recognition particle protein [Mobiluncus mulieris FB024-16]
          Length = 564

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 141/309 (45%), Gaps = 19/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F     ++ +    +    +L +   +    E+   L+ +D+ + V +    ++  K Y 
Sbjct: 2   FNKLQDRIADSFKHLRKKGKLSETDVDQTVGEIRRALLEADVALEVVKDFTAQVKEKAYG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGK 130
              S      Q+++  +++ + ++L   ++  ++      P V ++VG+ G GKTT+ GK
Sbjct: 62  AARSEALNPAQQIVKIINDELVEILGGEARELHFVKPGKGPTVFMLVGLQGAGKTTLAGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L K +     K +L A D  R  A+ QL+I  ++        E G+   D   +A     
Sbjct: 122 LGKWLGKQDKKTLLVAADLQRPNAVTQLQIVGEQAGVSVFAPEPGNGVGDPVDVARRGLA 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A     DV+I+DTAGRL  +  LMA    +       D   P  VL VLDA  GQ+A+R
Sbjct: 182 LATGSGYDVMIVDTAGRLGVDEKLMAQARAI------RDEVQPEEVLFVLDAMIGQDAVR 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F      TG++++K+DG ARGG  + +      PV F   GEG++D E F A   +
Sbjct: 236 TARAFQEGVDFTGVVLSKLDGDARGGAALSVRGVTGKPVLFASTGEGLDDFERFHADRMA 295

Query: 308 AVITGCLDY 316
           + I    D 
Sbjct: 296 SRILDMGDM 304


>gi|116490533|ref|YP_810077.1| signal recognition particle-docking protein FtsY [Oenococcus oeni
           PSU-1]
 gi|116091258|gb|ABJ56412.1| signal recognition particle-docking protein FtsY [Oenococcus oeni
           PSU-1]
          Length = 382

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 180/312 (57%), Gaps = 6/312 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S ++V  +         +G   T     E    ++++ R +D+   EELE+ LI +D+G 
Sbjct: 63  SEEQVQYKEDLEANSYEEGLTKTRSSFSEKFKMLMANFRAVDEDFFEELEETLIAADVGF 122

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFN---WDFSHRPHVIL 115
            +A KI  EL  +   K+ S ++ +    + +L++      +   N   +  + +P V L
Sbjct: 123 EMALKISNELQDEVRLKNASSKKDVQNTIIEKLVNVYDQAGNGENNEMLFAEAGQPSVFL 182

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGKTT IGK++      G KV+LAA DTFR+ A +QL  WA R   D V  +  
Sbjct: 183 FVGVNGVGKTTTIGKMASFYKKQGKKVLLAAADTFRAGATEQLVEWAHRDQVDVVTGKEK 242

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++ ++  K++     D+L +DTAGRL NN  LM  + KM +++ R  P+AP  VL 
Sbjct: 243 SDPASVVFDGVKKSIDGHYDILFVDTAGRLQNNDNLMRELEKMKKIITRQLPNAPQEVLL 302

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNAL+Q  +F      TGL++TK+DGTA+GG ++ I     +PV ++G+GE +
Sbjct: 303 VLDATTGQNALQQARLFKDSTDVTGLVLTKLDGTAKGGIVLAIRQELHLPVKWVGLGEKV 362

Query: 296 NDLEPFVAKDFS 307
           +DLEPF A +F 
Sbjct: 363 DDLEPFNADEFV 374


>gi|302392421|ref|YP_003828241.1| signal recognition particle-docking protein FtsY [Acetohalobium
           arabaticum DSM 5501]
 gi|302204498|gb|ADL13176.1| signal recognition particle-docking protein FtsY [Acetohalobium
           arabaticum DSM 5501]
          Length = 369

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 177/307 (57%), Gaps = 4/307 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQK 65
             +   +  +L  G + T       + ++ + R  +D+ + EELE++LI++D+GV     
Sbjct: 63  TEDEGGFFSRLKDGLSKTRNSFVSQVQNLFTGRSSIDEELYEELEEILIQADVGVHTTMG 122

Query: 66  IVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +V+EL T    + +     L++V  E +  +L   +     +  HR  +++VVGVNGVGK
Sbjct: 123 LVDELRTIAEEEGIKDPSKLHNVFKEQLEDILDRGADDVYDN--HRLTILMVVGVNGVGK 180

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGK++ +       V+LAAGDTFR+ AI+QL+ W      D +  E G+D+AA+AY+
Sbjct: 181 TTTIGKIALRAKQNSQDVLLAAGDTFRAGAIEQLEAWGTEVGVDIISHEAGADSAAVAYD 240

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+A+  D+L++DTAGRLH    LM  + K+ R++ R    A   VL VLDATTGQN
Sbjct: 241 AVQAAKARDKDLLVVDTAGRLHTQDNLMEELKKVHRIIDREAEDARVEVLLVLDATTGQN 300

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+ Q EMF       G+ +TK+DGTA+GG ++ +     IPV  +GVGE + DL+ F   
Sbjct: 301 AISQAEMFDKAVDVDGIALTKLDGTAKGGIILAVKEELGIPVKLIGVGEDVEDLQDFEPD 360

Query: 305 DFSAVIT 311
            F   + 
Sbjct: 361 AFIDALF 367


>gi|28896366|ref|NP_802716.1| signal recognition particle (docking protein) [Streptococcus
           pyogenes SSI-1]
 gi|28811617|dbj|BAC64549.1| putative signal recognition particle (docking protein)
           [Streptococcus pyogenes SSI-1]
          Length = 516

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 169/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRTGFSARLNSFFANFRRVDEEFFEDLEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    V +L+             ++     V+L VGVNGVGKTT IGKL
Sbjct: 273 AKLENAKKPDALKRVIVEKLVDIYEKDGHYNEAINYQDGLTVMLFVGVNGVGKTTSIGKL 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 333 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGMEKAVA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 393 KGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLPDAPHETLLALDASTGQNALSQAKE 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   + 
Sbjct: 453 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKVDDIGEFHSEDFMKGLL 512


>gi|262037876|ref|ZP_06011306.1| signal recognition particle-docking protein FtsY [Leptotrichia
           goodfellowii F0264]
 gi|261748086|gb|EEY35495.1| signal recognition particle-docking protein FtsY [Leptotrichia
           goodfellowii F0264]
          Length = 354

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 116/300 (38%), Positives = 178/300 (59%), Gaps = 5/300 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L    A+        +  ++  + +DD + EELE++LI+SDIG+ +  ++VEEL  +   
Sbjct: 54  LKDRLAAPKKGFFGKLKQMLLGKTIDDDLYEELEEVLIQSDIGMNMTMQLVEELEKRVAK 113

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPHVILVVGVNGVGKTTVIGKL 131
           K +     +YD  + I K     +   + +        + ++ILVVGVNGVGKTT IGK+
Sbjct: 114 KKLKTSEEVYDELKEILKEKFISNNTLHDNIDLDLKDGQLNIILVVGVNGVGKTTSIGKI 173

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+ + G KV++ AGDTFR+AAI+Q++ W  RT A+ V    GSD +A+ ++    A+ 
Sbjct: 174 ANKLINEGKKVIIGAGDTFRAAAIEQIEEWGKRTGAEVVKQSHGSDPSAVIFDTVSTAKN 233

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV IIDTAGRLHN   LM  + K+ +++++         L V+D TTGQN L Q ++
Sbjct: 234 RSFDVAIIDTAGRLHNKRDLMNELEKINKIIRQQSGQEKFETLLVIDGTTGQNGLEQAKV 293

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ +   +G+I+TK DGTA+GG + PI    K P+ F+GVGEGINDL  F  K+F   + 
Sbjct: 294 FNEIVDLSGIILTKFDGTAKGGIIFPISEELKKPIKFIGVGEGINDLRKFNIKEFVEAMF 353


>gi|256420373|ref|YP_003121026.1| signal recognition particle protein [Chitinophaga pinensis DSM
           2588]
 gi|256035281|gb|ACU58825.1| signal recognition particle protein [Chitinophaga pinensis DSM
           2588]
          Length = 441

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 148/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +    R+ +       +E+   L+ +D+   +A+   + +  K   
Sbjct: 2   FESLSERLDSAFKQLKGEGRISEINVASTVKEIRRALVDADVNYKIAKDFTDRVREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V + + +++         D    P +IL+ G+ G GKTT  GKL
Sbjct: 62  EKVITAISPGQLMVKIVKDELTELMGG--SEAELDVKSNPSIILIAGLQGSGKTTFSGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +    G K +L A D +R AAIDQLK+  ++   +        DA  +A  A   A+
Sbjct: 120 ANFLKTKKGKKPLLVAADIYRPAAIDQLKVLGEQIGVEVYSEPENKDAVKIAQNAIAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++IIDTAGRL  + ++M  +  +   +K      P+ +L V+D+ TGQ+A+   +
Sbjct: 180 QNNNNIIIIDTAGRLAVDEVMMTEVANVKAAVK------PNEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+++TK+DG  RGG  + I  T + P+ F+ +GE ++ L+ F  +  +  I
Sbjct: 234 AFNERLDFSGVVLTKLDGDTRGGAALTIKYTVEKPIKFVSMGEKLDTLDVFYPERMAQRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|298675575|ref|YP_003727325.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Methanohalobium evestigatum Z-7303]
 gi|298288563|gb|ADI74529.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanohalobium evestigatum Z-7303]
          Length = 440

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 145/303 (47%), Gaps = 22/303 (7%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
                 L++ +  +++S R+D+     V ++++  L+++D+ V +   + +++  +   +
Sbjct: 4   DKLGSSLQDALKKLVNSGRIDEKSVNDVVKDIQRALLQADVNVQLVMNMSKQIKERALKE 63

Query: 78  DVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       + V+  V + +  ++         + +  P  I+++G+ G GKTT   KL+
Sbjct: 64  EVPSGMNPREHVIRIVYQELINIIGEG-----TEINLEPQTIMMIGLQGSGKTTTTSKLA 118

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +     GLK  +   DTFR  A  QLK   D+ S  F   E   D+  +        +  
Sbjct: 119 RYFQKKGLKPAVICADTFRPGAYHQLKSLCDKNSIPFYGEEGNEDSLGIVERGMD--KLG 176

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K DVLIIDTAGR      L+  + ++  + K      P   L VLDA  GQ A  Q   F
Sbjct: 177 KYDVLIIDTAGRHSLEQDLIEEMEQINSIAK------PDKKLLVLDAAIGQQASEQARAF 230

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +   G +G+++TK+DGTA+GGG +  V      + F+GVGE   DLE F    F + + G
Sbjct: 231 NESIGISGVVITKLDGTAKGGGALSAVSETNSSIAFIGVGETSGDLEKFEPDRFISRLLG 290

Query: 313 CLD 315
             D
Sbjct: 291 MGD 293


>gi|197631999|gb|ACH70723.1| signal recognition particle 54 [Salmo salar]
 gi|209154348|gb|ACI33406.1| Signal recognition particle 54 kDa protein [Salmo salar]
          Length = 504

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCAALLEADVNIKLVKQLRENVKSSIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ +R++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRRMIQHSVFKELVKLVDPGVKAWT-PTKGKNNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVVIAAEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L+  +   P +++ V+DA+ GQ    Q + 
Sbjct: 182 ESFEIIIVDTSGRHKQEDSLFEEM------LQVSNAVQPDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+DLEPF  + F + + 
Sbjct: 236 FKDKVEVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDLEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|313885163|ref|ZP_07818915.1| signal recognition particle protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619854|gb|EFR31291.1| signal recognition particle protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 489

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 93/308 (30%), Positives = 151/308 (49%), Gaps = 18/308 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  I+ +    ++ +     +  E+   L+ +D+   V +K V+++  +  
Sbjct: 2   AFEGLSERLQGAISSVGKGGKISEADLRQMMREIRLALLEADVNFKVVKKFVKQVNERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++    +P N   S  P V+++VG+ G GKTT +GK
Sbjct: 62  GSDVLKSLSPAQQVVKIVDEELTDLMGGEREPLNM-ASQPPTVMMMVGLQGAGKTTTVGK 120

Query: 131 LSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           L+K +++     K +L AGD +R AA+DQLK    +   +            +A  A  Q
Sbjct: 121 LAKYITEELGKKKPLLVAGDVYRPAAVDQLKTIGQQLGFEVYDEGTQVSPVEIAKRALDQ 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+     V+IIDTAGRLH N  LM  +  +   +       P  +L  +DA TGQ+A+  
Sbjct: 181 AKLNGNQVVIIDTAGRLHVNEELMDELRNIKAAVN------PDEILLTVDAMTGQDAVNV 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F+     TG+++TK+DG  RGG  + I      P+ F G GE ++ LEPF     S+
Sbjct: 235 ADAFNEALDITGVVITKLDGDTRGGAALSIRSIIDKPIKFTGQGEKLDALEPFYPDRMSS 294

Query: 309 VITGCLDY 316
            I G  D 
Sbjct: 295 RILGMGDM 302


>gi|148272542|ref|YP_001222103.1| Signal recognition particle component [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830472|emb|CAN01407.1| Signal recognition particle component [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 291

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 115/293 (39%), Positives = 165/293 (56%), Gaps = 6/293 (2%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           A T   L   +  + +   +D+   ++LE  LI +D G  V +  +++L  K      + 
Sbjct: 3   ARTPWSLSGALRGMFAKPTIDETTWDDLETALITADFGPDVTEATIDDLRQKVERYRTTD 62

Query: 82  QRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            R L   + E I + L           S RP VILVVGVNGVGKTT IGK +K + + G 
Sbjct: 63  PRDLQRMLRESIEERLAKHDP--TLKLSARPAVILVVGVNGVGKTTTIGKFAKFLRNYGR 120

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            V++ A DTFR+AA+DQL  WADR  A+ V   + G D A++A++  + A     +++II
Sbjct: 121 TVVVGAADTFRAAAVDQLATWADRAGAEIVRPQQPGQDPASVAFQTVEHAMRTGTEMVII 180

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH    LM  + K+ RV+++  P A   VL VLDATTGQN L Q + F    G T
Sbjct: 181 DTAGRLHTKGGLMDELSKIRRVVEKQSPIA--EVLLVLDATTGQNGLAQAQAFIEHGGVT 238

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           GL++TK+DG+A+GG ++ +     IP+  +G GEGI DL  F    F+  + G
Sbjct: 239 GLVITKLDGSAKGGFILNVQERTGIPIKLIGQGEGIGDLTGFTPHVFAQNLVG 291


>gi|54194|emb|CAA34386.1| unnamed protein product [Mus musculus]
          Length = 504

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L     ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEERLQVSNAIQ------PDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|209965489|ref|YP_002298404.1| signal recognition particle protein [Rhodospirillum centenum SW]
 gi|209958955|gb|ACI99591.1| signal recognition particle protein [Rhodospirillum centenum SW]
          Length = 452

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + +L +    +     L +        E+   L+ +D+ +   +  V  +  K   
Sbjct: 2   FEGLTGRLGDIFDRLRRRGALSEEDVGAALREVRIALLEADVALPAVKAFVAGVKEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V         V+  V + + ++L   S+  N   +    V L++G+ G GKTT   K+
Sbjct: 62  QEVLRGINPGHMVIKIVHDHLVELLGETSEEINLSATPPVPV-LMLGLQGSGKTTTSAKI 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + ++      KV+LA+ DT R AA +QLK+ AD+     +    G     +A  A +  +
Sbjct: 121 ALRLKTREKKKVLLASLDTRRPAAQEQLKVLADQVGVASLPIIPGQTPVQIARRAMETGR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+++DTAGRL  +  LMA       V++  D   P   L V+DA TGQ+A+    
Sbjct: 181 LEGFDVVMLDTAGRLAIDDELMAE------VVEIRDATKPVESLLVVDAMTGQDAVTVAT 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG++MT++DG ARGG  + +      P+  LGVGE ++ LE F     +  I
Sbjct: 235 NFNERVGITGIVMTRIDGDARGGAALSMRYVTGKPIKLLGVGEKVDALESFHPDRIAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|261338450|ref|ZP_05966334.1| signal recognition particle FtsY [Bifidobacterium gallicum DSM
           20093]
 gi|270276435|gb|EFA22289.1| signal recognition particle FtsY [Bifidobacterium gallicum DSM
           20093]
          Length = 439

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 177/307 (57%), Gaps = 7/307 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             S + +L +  + ++    + + +I++   L +   E++ED L+ +D+G   ++ +VEE
Sbjct: 134 RKSRLERLRERLSKSANPFGKALFNILAKDHLTEADWEDVEDTLLMADVGAEASEHLVEE 193

Query: 70  LLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKT 125
           L         +    + +   S+L+  +   + +  N D   + +P VI++VGVNG GKT
Sbjct: 194 LRRDARVTGTADASEVRNALRSQLLELVGTDVDRRLNADKPDADKPSVIIMVGVNGTGKT 253

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYE 184
           T  GKL++       +V+L A DTFR+AA DQL+ W  +     V SE  G+D A++A+E
Sbjct: 254 TTAGKLARLFVSQDKQVLLGAADTFRAAAADQLETWGAKVGVPIVRSERDGADPASVAFE 313

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A  +A+    DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDATTGQN
Sbjct: 314 ASAKAKELDTDVLIIDTAGRLQNKANLMDELGKIRRVTEKNLP--VDEVLLVLDATTGQN 371

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            + Q ++F    G TG+++TK+DG+A+GG +I +     +PV  +GVGEG +DL PF  +
Sbjct: 372 GMAQAKVFAQAIGITGVVLTKLDGSAKGGIVIAVQKELGVPVKLVGVGEGPDDLAPFDPE 431

Query: 305 DFSAVIT 311
            F   I 
Sbjct: 432 SFVDGIL 438


>gi|227875974|ref|ZP_03994097.1| signal recognition particle protein [Mobiluncus mulieris ATCC
           35243]
 gi|227843506|gb|EEJ53692.1| signal recognition particle protein [Mobiluncus mulieris ATCC
           35243]
          Length = 564

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 141/309 (45%), Gaps = 19/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F     ++ +    +    +L +   +    E+   L+ +D+ + V +    ++  K Y 
Sbjct: 2   FNKLQDRIADSFKHLRKKGKLSETDVDQTVGEIRRALLEADVALEVVKDFTAQVKEKAYG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGK 130
              S      Q+++  +++ + ++L   ++  ++      P V ++VG+ G GKTT+ GK
Sbjct: 62  AARSEALNPAQQIVKIINDELVEILGGEARELHFVKPGKGPTVFMLVGLQGAGKTTLAGK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFK 187
           L K +     K +L A D  R  A+ QL+I  ++        E G+   D   +A     
Sbjct: 122 LGKWLGKQDKKTLLVAADLQRPNAVTQLQIVGEQAGVSVFAPEPGNGVGDPVDVARRGLA 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A     DV+I+DTAGRL  +  LMA    +       D   P  VL VLDA  GQ+A+R
Sbjct: 182 LATGSGYDVMIVDTAGRLGVDEKLMAQARAI------RDEVQPEEVLFVLDAMIGQDAVR 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F      TG++++K+DG ARGG  + +      PV F   GEG++D E F A   +
Sbjct: 236 TARAFQEGVDFTGVVLSKLDGDARGGAALSVRGVTGKPVLFASTGEGLDDFERFHADRMA 295

Query: 308 AVITGCLDY 316
           + I    D 
Sbjct: 296 SRILDMGDM 304


>gi|62899020|ref|NP_446323.1| signal recognition particle 54 kDa protein [Rattus norvegicus]
 gi|73621950|sp|Q6AYB5|SRP54_RAT RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|50925703|gb|AAH79117.1| Signal recognition particle 54a [Rattus norvegicus]
          Length = 504

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQ------PDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|322411356|gb|EFY02264.1| putative signal recognition particle-docking protein FtsY
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 516

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 168/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRTGFSARLNSFFANFRRVDEEFFEDLEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    V +L+             ++     V+L VGVNGVGKTT IGKL
Sbjct: 273 AKLENAKKPDALKRVIVEKLVDIYEKDGQYNEAINYQDGLTVMLFVGVNGVGKTTSIGKL 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 333 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVIMGPEKADPASVVFDGVEKAVA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 393 EGADILMIDTAGRLQNKENLMAELEKMGRIIKRVIPDAPHETLLALDASTGQNALSQAKE 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   + 
Sbjct: 453 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKMDDIGEFHSEDFMKGLL 512


>gi|332526543|ref|ZP_08402655.1| signal recognition particle protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332110811|gb|EGJ10988.1| signal recognition particle protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 440

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 136/286 (47%), Gaps = 14/286 (4%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           I+   + D +  E+   L+ +D+ + V +  +  +  K   ++V       Q ++  V +
Sbjct: 7   ITEGNVQD-MLREVRMALLEADVALPVVRDFIARVKDKALGQEVAGSLNPGQALVGIVHK 65

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDT 149
            +   +       N      P VIL+ G+ G GKTT   KL+K +      KV+  + D 
Sbjct: 66  ELAATMGDGVADLNLAV-QPPAVILMAGLQGAGKTTTTAKLAKHLIERRKKKVLTVSADV 124

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AAIDQLK    +  A++  S        +A  A   A+    DVL++DTAGRL  + 
Sbjct: 125 YRPAAIDQLKTVTKQAGAEWFPSAPSDKPRDIALAALDHAKRHYFDVLLVDTAGRLAIDE 184

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LMA I ++   LK      P   L V+DA  GQ+A+   + F      +G+++TK+DG 
Sbjct: 185 ALMAEIRELHATLK------PVETLFVVDAMQGQDAINTAKAFKEALPLSGIVLTKLDGD 238

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +RGG  + +      P+ F GV E I+ LE F A+  +  + G  D
Sbjct: 239 SRGGAALSVRQVAGAPIKFAGVSEKIDGLEVFDAERHAGRVLGMGD 284


>gi|315924203|ref|ZP_07920429.1| cell division protein FtsY [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622605|gb|EFV02560.1| cell division protein FtsY [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 305

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 120/306 (39%), Positives = 179/306 (58%), Gaps = 4/306 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S  +++    A T     E I   +  + LD+   +ELE+ LI SD+ +  ++ I+++L 
Sbjct: 3   SLYQRMKDKLAGTKKNFSEKINRALYYKNLDENFFDELEESLILSDMSIETSEAIIDQLQ 62

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +   K +     +  + E I   ++ +           P V+LVVGVNGVGKTT I KL
Sbjct: 63  KEIKQKGIKKSEEVLGLLESIMTEMVTV----TAAPMQMPAVMLVVGVNGVGKTTTIAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +++  + G  VMLAA DTFR+AA +QL+ WA+R   D + S  G+D A++ Y+A   A +
Sbjct: 119 AQRYKNEGKTVMLAAADTFRAAAAEQLEAWAERIGVDIIASASGADPASVVYDALHAAHS 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVLI DTAGRLHN   LM  + K+ R++ R         L V+DATTGQNAL Q   
Sbjct: 179 RHADVLICDTAGRLHNKVNLMNELEKLSRIIDREGQGFDVHNLLVVDATTGQNALTQART 238

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     +G++MTKMDGTA+GG +IP++   KIPV ++G+GEG +DL PF A++F  ++ 
Sbjct: 239 FNEAVHLSGIVMTKMDGTAKGGVVIPMINELKIPVEYVGLGEGADDLVPFDAREFVKLLY 298

Query: 312 GCLDYG 317
              D G
Sbjct: 299 DTSDSG 304


>gi|115871973|ref|XP_780650.2| PREDICTED: similar to Signal recognition particle 54
           [Strongylocentrotus purpuratus]
 gi|115951374|ref|XP_001185704.1| PREDICTED: similar to Signal recognition particle 54
           [Strongylocentrotus purpuratus]
          Length = 510

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +D+ V      E+   L+ +D+ + + + + E + +    
Sbjct: 3   LADLGRKITSALKSLSNATIIDEDVLNSMLNEICRALLEADVNIRLVKALKENVKSVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ ++++   V + + K++ P  K +      +P++I+ VG+ G GKTT   KL
Sbjct: 63  DEMAAGLNKRKMIQTAVFKELVKLVDPGVKVWT-PTKAKPNIIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G KV L   DTFR+ A DQLK  A +    F  S    D   +A +  ++ + 
Sbjct: 122 AYYYQKKGWKVALICADTFRAGAFDQLKQNATKARIPFYGSYTEVDPVIIAADGVEKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++  V       +P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANV------TSPDNIIFVMDASIGQACESQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K PV F+G GE I+D EPF  K F + + 
Sbjct: 236 FKEKVDVASVIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDDFEPFKTKPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|332526542|ref|ZP_08402654.1| signal recognition particle-docking protein FtsY [Rubrivivax
           benzoatilyticus JA2]
 gi|332110810|gb|EGJ10987.1| signal recognition particle-docking protein FtsY [Rubrivivax
           benzoatilyticus JA2]
          Length = 373

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 185/313 (59%), Gaps = 12/313 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           VA     W+ +L  G   T       IT + +  ++DD + E+LE  L+ +D GV   Q 
Sbjct: 67  VAEPRSRWLDRLKLGLRKT----GSSITQVFTGTKIDDALYEDLESALLVADAGVGATQY 122

Query: 66  IVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++++L  +      +   V+  + ++ + ++L PL KP        P V++V GVNG GK
Sbjct: 123 LLQDLKRRVKEAKATEPAVVKALLADAVAELLAPLQKPLVIG-QQTPTVVMVAGVNGAGK 181

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL++ ++++  +V+LAA DTFR+AA +QL +WADR   + V S+ G D AA++++
Sbjct: 182 TTTIGKLTRHLAESDRRVLLAAADTFRAAAREQLAVWADRNRVEIV-SQQGGDPAAVSFD 240

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A    +A+  DV+I DTAGRL     LM  + K+ R + +    APH VL V+D  TGQN
Sbjct: 241 AVTAGRARGCDVVIADTAGRLPTQLHLMDELKKIKRTIGKAQEGAPHEVLLVIDGNTGQN 300

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK-----IPVYFLGVGEGINDLE 299
           AL QV+ F A  G TGLI+TK+DGTA+GG L  I          +PVYF+GVGE + DL+
Sbjct: 301 ALAQVKAFDAALGLTGLIVTKLDGTAKGGVLAAIARWCAEQGRVVPVYFIGVGERLEDLQ 360

Query: 300 PFVAKDFSAVITG 312
            F A++F+  + G
Sbjct: 361 TFDAREFANALLG 373


>gi|209559035|ref|YP_002285507.1| Signal recognition particle receptor protein FtsY alpha subunit
           [Streptococcus pyogenes NZ131]
 gi|209540236|gb|ACI60812.1| Signal recognition particle receptor protein FtsY alpha subunit
           [Streptococcus pyogenes NZ131]
          Length = 516

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 169/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRTGFSARLNSFFANFRRVDEEFFEDLEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    V +L+             ++     V+L VGVNGVGKTT IGKL
Sbjct: 273 AKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAINYQDGLTVMLFVGVNGVGKTTSIGKL 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 333 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGMEKAVA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 393 KGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLPDAPHETLLALDASTGQNALSQAKE 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   + 
Sbjct: 453 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKVDDIGEFHSEDFMKGLL 512


>gi|225714310|gb|ACO13001.1| Signal recognition particle 54 kDa protein [Lepeophtheirus
           salmonis]
          Length = 508

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +D+ V     +EL   L+ +D+ + +  K+ E +      
Sbjct: 3   LADLGRKINNALNSLSKATIVDEEVLNGMLKELCAALLEADVNIRLVAKLRENVRGVINF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A+ ++ ++++ + V   + K++ P  +P+      + +V++ VG+ G GKTT   KL
Sbjct: 63  EEMAQGLNKRQIIKEAVYLELVKLVDPGVEPYTPK-KGKSNVVMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E     + 
Sbjct: 122 AWYYQKKGWKACLVCADTFRAGAYDQLKQNATKARIPFYGSYTEPDPVVIANEGVNMFKE 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR +    L   +  +   +       P +++ V+DA+ GQ    Q   
Sbjct: 182 EGFEIIIVDTSGRHYQEDALFEEMLAVSNAVN------PDNIIFVMDASIGQACEAQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I +K+D  A+GGG +  V   K PV F+G GE I+D EPF  K F   + 
Sbjct: 236 FKEKVDVGSVITSKLDSHAKGGGALSAVAATKSPVVFIGTGEHIDDFEPFKTKPFVQKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|83855061|ref|ZP_00948591.1| signal recognition particle protein [Sulfitobacter sp. NAS-14.1]
 gi|83842904|gb|EAP82071.1| signal recognition particle protein [Sulfitobacter sp. NAS-14.1]
          Length = 502

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  V+ +  K   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFVKAVQDKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +   L    +P        P  IL+VG+ G GKTT   KL
Sbjct: 62  QAVTKSITPGQQVVKIVHDALIDTLKGEGEPGALKIDSPPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ D  G +V++A+ D  R AA++QL I   +   D +    G +   +A  A  QA 
Sbjct: 122 AKRLKDRDGKRVLMASLDVNRPAAMEQLAILGVQIGVDTLPIVKGENPVQIAKRAKTQAS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  +  L      M +V    D   P   L V+D  TGQ+A++  E
Sbjct: 182 MGGYDVYMLDTAGRLSIDEEL------MRQVEAVRDVANPRETLLVVDGLTGQDAVQTAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  I
Sbjct: 236 NFNDRIGISGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGLGEKMDALETFEPERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|238854772|ref|ZP_04645102.1| cell division protein FtsY [Lactobacillus jensenii 269-3]
 gi|260664004|ref|ZP_05864857.1| signal recognition particle-docking protein FtsY [Lactobacillus
           jensenii SJ-7A-US]
 gi|282933850|ref|ZP_06339198.1| FtsY-like protein [Lactobacillus jensenii 208-1]
 gi|238832562|gb|EEQ24869.1| cell division protein FtsY [Lactobacillus jensenii 269-3]
 gi|260561890|gb|EEX27859.1| signal recognition particle-docking protein FtsY [Lactobacillus
           jensenii SJ-7A-US]
 gi|281301939|gb|EFA94193.1| FtsY-like protein [Lactobacillus jensenii 208-1]
          Length = 437

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 102/295 (34%), Positives = 164/295 (55%), Gaps = 7/295 (2%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
            G   T+      +    +  R +D+   +ELEDLLI SD+G   +++++++L  +   +
Sbjct: 136 NGLKKTNQGFGARLNAFFAQFRSVDENFFDELEDLLIESDVGFETSEELIDQLKDEAKLQ 195

Query: 78  DVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V     L  +      E+  +     ++   ++   + +V L VGVNG GKTT IGKL+
Sbjct: 196 NVKSHDELKKLIVQKLVEIYDQNGDADAEKLTYN-EGKTNVYLFVGVNGAGKTTTIGKLA 254

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           ++    G KV+L A DTFR+ A++QLK W  RT  + V   + +D A++ Y+  K    +
Sbjct: 255 QRFKQEGKKVVLVAADTFRAGAVEQLKEWGKRTETEVVTGPVQADPASVVYDGVKHGLEE 314

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D +++DTAGRL N   LM  + K+ R +K+L P  P   L VLD +TGQNAL Q + F
Sbjct: 315 DADYVLVDTAGRLQNKQNLMKELEKIERTIKKLVPDQPCETLLVLDGSTGQNALLQAKDF 374

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 TGL++TK+DG+++GG ++ I    K+PV  +G+GE   DL  F A  ++
Sbjct: 375 DKTTKLTGLVLTKLDGSSKGGVILAIRNEMKLPVKLVGLGEKAEDLADFDAASYA 429


>gi|114763706|ref|ZP_01443100.1| signal recognition particle protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114543707|gb|EAU46720.1| signal recognition particle protein [Roseovarius sp. HTCC2601]
          Length = 502

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA++ ++ +  K   
Sbjct: 2   FENLSERLGGVFDRLTKQGALSEDDVRTALREVRVALLEADVSLPVARQFIKAVEKKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V+      Q+V+  V + +  +L    +P +      P  IL+VG+ G GKTT   KL
Sbjct: 62  AAVTKSVTPGQQVVKIVHDELIAVLAGEGEPGSLRVDSPPAPILMVGLQGGGKTTTTAKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++ +  G KV++A+ D  R AA++QL I   +   D +    G D  A+A  A  QA 
Sbjct: 122 ARRLKERDGKKVLMASLDVNRPAAMEQLAILGTQIGVDTLPIVKGEDPVAIAKRAKTQAG 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  +  LMA       V    D   P   L V+D  TGQ+A+   E
Sbjct: 182 LGGYDVYMLDTAGRLSIDEELMAQ------VEAVRDVANPRETLLVVDGLTGQDAVHTAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F     +  I
Sbjct: 236 NFDTRIGITGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGLGEKMDALETFEPDRVAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|118355606|ref|XP_001011062.1| SRP54-type protein, GTPase domain containing protein [Tetrahymena
           thermophila]
 gi|89292829|gb|EAR90817.1| SRP54-type protein, GTPase domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 460

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/303 (28%), Positives = 152/303 (50%), Gaps = 14/303 (4%)

Query: 21  FASTSLKLKEGITDIISS----RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 K+ + ++++       ++L + V ++++  L++SDI V   +++ + +L K   
Sbjct: 3   LNDLGKKINDALSNLNKDYHFDKQLLNKVLKDIQLALLQSDINVKYVKQLSDNILQKCNN 62

Query: 77  KDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            + +V +       V + + KML P  +PF+   S +P+V++ VG+ G GKTT   K + 
Sbjct: 63  IEEAVNKKKLIQQLVVQELTKMLDPKKQPFSLK-SGKPNVVMFVGLQGAGKTTTCAKYAN 121

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G +  L   DTFR+ A DQL+  A +    F  +   +D  A+A E  K  Q + 
Sbjct: 122 YWKKKGWRTCLICADTFRAGAFDQLQQIATKIRIPFYGNRTETDPVAIAIEGVKTFQKQN 181

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            +V+IIDT+GR    S L   + ++   +       P+  + V+D + GQ  L Q + F 
Sbjct: 182 FEVIIIDTSGRHMQESELFDEMKQIYSAV------CPNECIFVMDGSNGQACLNQAQAFK 235

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                  +I+TK+DG ++GGG +  V   + P+ FLG GE  +DLE F A+ F   + G 
Sbjct: 236 KAVDVGSVIITKLDGHSKGGGALSAVAATESPIIFLGTGEHFDDLETFKAESFVKRLLGL 295

Query: 314 LDY 316
            D+
Sbjct: 296 GDF 298


>gi|251781993|ref|YP_002996295.1| putative cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390622|dbj|BAH81081.1| putative cell division protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 516

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 169/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T +     +    ++ RR+D+   E+LE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRIGFSARLNSFFANFRRVDEEFFEDLEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    V +L+             ++     V+L VGVNGVGKTT IGKL
Sbjct: 273 AKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAINYQDGLTVMLFVGVNGVGKTTSIGKL 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 333 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGVEKAVA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 393 EGADILLIDTAGRLQNKENLMAELEKMGRIIKRVIPDAPHETLLALDASTGQNALSQAKE 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   + 
Sbjct: 453 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKMDDIGEFHSEDFMKGLL 512


>gi|222832532|gb|EEE71009.1| predicted protein [Populus trichocarpa]
          Length = 425

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 137/285 (48%), Gaps = 20/285 (7%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLM- 97
            +  E+   ++ +D+ + V ++ +  +  K   +DV       Q ++  V   +  ++  
Sbjct: 14  EMLREVRLAMLEADVALPVVREFIARVKEKALGEDVVTSLTPGQALVGVVQRELTAVIGG 73

Query: 98  ------PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTF 150
                   S   N +    P VIL+ G+ G GKTT  GKL+K + +   K +   + D +
Sbjct: 74  DEAVADQKSNELNLNV-QPPAVILMAGLQGAGKTTTSGKLAKWLKENKKKKVLTVSCDVY 132

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R AAI QLK  +++   DF  S+       +A  A   A+    DVLI+DTAGRL  +  
Sbjct: 133 RPAAIAQLKTVSEQVGVDFFPSQPDQKPVEIARAALDWARKHYHDVLIVDTAGRLGIDEA 192

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +M  I  +   LK          L V+DA  GQ+A+   + F+     TG+++TK+DG A
Sbjct: 193 MMQEIAALHAELKPA------ETLFVVDAMLGQDAVNTAKAFNDALPLTGVVLTKLDGDA 246

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + +      P+ F+GVGE ++ LEPF A   +  I G  D
Sbjct: 247 RGGAALSVRHITGRPIKFVGVGEKLDGLEPFYADRMAQRILGMGD 291


>gi|83941584|ref|ZP_00954046.1| signal recognition particle protein [Sulfitobacter sp. EE-36]
 gi|83847404|gb|EAP85279.1| signal recognition particle protein [Sulfitobacter sp. EE-36]
          Length = 502

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  V+ +  K   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFVKAVQDKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +   L    +P        P  IL+VG+ G GKTT   KL
Sbjct: 62  QAVTKSITPGQQVVKIVHDALIDTLKGEGEPGALKIDSPPAPILMVGLQGSGKTTTTAKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ D  G +V++A+ D  R AA++QL I   +   D +    G +   +A  A  QA 
Sbjct: 122 AKRLKDRDGKRVLMASLDVNRPAAMEQLAILGVQIGVDTLPIVKGENPVQIAKRAKTQAS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  +  L      M +V    D   P   L V+D  TGQ+A++  E
Sbjct: 182 MGGYDVYMLDTAGRLSIDEEL------MRQVEAVRDVANPRETLLVVDGLTGQDAVQTAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  I
Sbjct: 236 NFNDRIGISGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGLGEKMDALETFEPERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|50748422|ref|XP_421238.1| PREDICTED: similar to Signal recognition particle 54 [Gallus
           gallus]
 gi|224051427|ref|XP_002200552.1| PREDICTED: signal recognition particle 54kDa [Taeniopygia guttata]
          Length = 504

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + ++I+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNIIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DT+R+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYFYQRKGWKTCLICADTYRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|158312998|ref|YP_001505506.1| signal recognition particle-docking protein FtsY [Frankia sp.
           EAN1pec]
 gi|158108403|gb|ABW10600.1| signal recognition particle-docking protein FtsY [Frankia sp.
           EAN1pec]
          Length = 431

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 168/310 (54%), Gaps = 4/310 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            V + +   + +L    A +   L  G+  ++S   LD+   E++E  L+ +D+GV    
Sbjct: 121 DVPAPATGRMVRLRARLARSQNALGRGLLALLSGDNLDEEAWEDVEATLLVADVGVTATA 180

Query: 65  KIVEELLTK--RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           ++VE L  +        +    +    EL+ ++     +        RP V+LVVGVNG 
Sbjct: 181 EMVEALRERTRVLGARTAADARMMLRDELLAQVGTTTDRSLRTSAPDRPAVVLVVGVNGT 240

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GK+++ +   G  V+L A DTFR+AA DQL+ W  R  A  V    G+D A++A
Sbjct: 241 GKTTTCGKIARLLVADGRSVVLGAADTFRAAAADQLETWGGRVGATTVRGAEGADPASVA 300

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           +EA K+      D +++DTAGRLH    LM  + K+ RV+ +  P     VL VLD+TTG
Sbjct: 301 FEAVKRGIDDGADTVLVDTAGRLHTKVGLMDELTKIKRVVGKQSP--VDEVLLVLDSTTG 358

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q  +F      TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF 
Sbjct: 359 QNALVQARVFTEAVDITGVVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDDLAPFE 418

Query: 303 AKDFSAVITG 312
            + F   + G
Sbjct: 419 PEAFVDALLG 428


>gi|91227501|ref|ZP_01261838.1| cell division protein FtsY [Vibrio alginolyticus 12G01]
 gi|91188525|gb|EAS74817.1| cell division protein FtsY [Vibrio alginolyticus 12G01]
          Length = 403

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 112/273 (41%), Positives = 177/273 (64%), Gaps = 1/273 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++D+ + EELE+ L+ +D+G+   
Sbjct: 88  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDEDLFEELEEQLLIADVGMNTT 147

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI+  L  K    D+     LY  + E + ++L  + +P   D +  P+VIL+VGVNGV
Sbjct: 148 TKIINNLTEKATRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSNKTPYVILMVGVNGV 207

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R +   +    G+D+A++ 
Sbjct: 208 GKTTTIGKLAKQFQTQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVI 267

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A+ VDV+I DTAGRL N + LM  + K++RV+K++D  APH ++  LDA TG
Sbjct: 268 YDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTG 327

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
           QNA+ Q ++F  VA  TG+ +TK+DGTA+GG +
Sbjct: 328 QNAISQAKLFSDVAPLTGITLTKLDGTAKGGVI 360


>gi|188589484|ref|YP_001920588.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251778567|ref|ZP_04821487.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188499765|gb|ACD52901.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243082882|gb|EES48772.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 302

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 184/302 (60%), Gaps = 5/302 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   KL  G   T   L + I + +  +  +D+ + EELE++LI SDIG+     I+E L
Sbjct: 4   NLFNKLKDGLTKTRDGLTDKINEALKIAITIDEDLYEELEEILITSDIGMDTTMDIIERL 63

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K   + ++  + +   + E+I ++L+  +   N D      V+LV+GVNGVGKTT IG
Sbjct: 64  RKKIRKEKINDPQDVKPALKEVIKEILLEGNYEDNDDEKK---VMLVIGVNGVGKTTSIG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K   AG KV+L A DTFR+AAIDQL++W+ R   D +  + GSD AA+ ++A + +
Sbjct: 121 KLAAKNKRAGKKVLLIAADTFRAAAIDQLEVWSRRAEVDLIKHQEGSDPAAVVFDAIEAS 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D+LI DTAGRLHN   LM  + K+ R++ R         L VLDATTGQNA+ Q 
Sbjct: 181 KARNTDLLICDTAGRLHNKKNLMNELEKINRIIDRELDGVKKETLLVLDATTGQNAVIQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  V    G+I+TK+DGTA+GG +I I  +  IPV ++GVGE I+DL+ F A+ F+  
Sbjct: 241 KQFMEVCPIDGIILTKLDGTAKGGVVISIKQSLNIPVRYIGVGECIDDLQEFDAESFAEA 300

Query: 310 IT 311
           I 
Sbjct: 301 II 302


>gi|302389627|ref|YP_003825448.1| signal recognition particle-docking protein FtsY
           [Thermosediminibacter oceani DSM 16646]
 gi|302200255|gb|ADL07825.1| signal recognition particle-docking protein FtsY
           [Thermosediminibacter oceani DSM 16646]
          Length = 298

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 121/302 (40%), Positives = 180/302 (59%), Gaps = 5/302 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  +L +  A T   L E +  ++  S ++D+   EELE++LI +DIGV   +K++  
Sbjct: 1   MGFFERLKQSLAKTRNSLAEKVESLLKFSTKIDEETLEELEEILITADIGVDATEKLISR 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  K  A+ +       ++ E +   ++ +     +D    P VIL+VGVNGVGKTT IG
Sbjct: 61  LREKVKAEKIKSPE---ELKEALKNEIIKVFPEPKFDI-IPPSVILIVGVNGVGKTTTIG 116

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K    G KV+LAA DTFR+AA +QL IW  R   D +  + GSD A++ ++A +  
Sbjct: 117 KLAFKFKSEGKKVILAAADTFRAAATEQLSIWGQRVGVDVIKHQEGSDPASVLFDAIQAG 176

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ D++I DTAGRLH    LM  + K+ RV ++  P A  S L VLDATTGQNA+ Q 
Sbjct: 177 KARRADIIICDTAGRLHTRKNLMEELKKLYRVSEKEYPEARISSLLVLDATTGQNAIAQA 236

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F      +G+I+TK+DGTA+GG  + I     +PV F+GVGEG++DL+ F  K F   
Sbjct: 237 RIFKEAVNISGIILTKLDGTAKGGVAVAIASELNLPVLFVGVGEGVDDLQEFDPKAFVDA 296

Query: 310 IT 311
           I 
Sbjct: 297 IF 298


>gi|297622324|ref|YP_003703758.1| signal recognition particle protein [Truepera radiovictrix DSM
           17093]
 gi|297163504|gb|ADI13215.1| signal recognition particle protein [Truepera radiovictrix DSM
           17093]
          Length = 439

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 137/304 (45%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L+     +    RL +        E+   L+ +D+ + VA+   + +  K   
Sbjct: 2   FESLGDRLQGVFDSLRGRGRLTEDEVRAALREVRVALLEADVSLEVARDFTKRVQEKAVG 61

Query: 77  KD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +        QRV+  V + + ++L    K       +  +V L++G+ G GKTT  GKL
Sbjct: 62  SETLMSLQPDQRVIAIVHDELVELLGG--KTAQPSLKNDANVWLLLGLQGAGKTTTAGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K    G + +L A DT R AA +QL++   +     +  E     A       +  + 
Sbjct: 120 AYKYKAQGRRPLLVAADTQRPAAREQLRVLGKQIGVPVLEVEDHETPARTRARLQEVLRT 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRL  +  LM  + ++   L       P   + V+DA TGQ +L   + 
Sbjct: 180 TYHDLVIVDTAGRLQIDEALMDAVAELKAELS------PSETMLVIDAMTGQQSLPVAKT 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TGLIMTK+DG ARGG  +        P+YF G+ E I+ LE F     +  I 
Sbjct: 234 FDERVGVTGLIMTKLDGDARGGAALSARHVTGKPIYFAGMSEKIDGLEAFHPDRIAGRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|322389956|ref|ZP_08063496.1| cell division protein FtsY [Streptococcus parasanguinis ATCC 903]
 gi|321143392|gb|EFX38830.1| cell division protein FtsY [Streptococcus parasanguinis ATCC 903]
          Length = 552

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 171/310 (55%), Gaps = 3/310 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           ++  +  +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA
Sbjct: 239 EIEPQQETIQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVA 298

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHRPHVILVVGVNG 121
             + EEL  +   ++      L  V       L      FN    F     V+L VGVNG
Sbjct: 299 SNLTEELRYEARLENAKKPDALKRVIIEKLVDLYEKDGQFNEAIRFQDGLTVMLFVGVNG 358

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V     SD A++
Sbjct: 359 VGKTTSIGKLAHRYKQEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASV 418

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++  ++A A+ +DVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+T
Sbjct: 419 VFDGIERAIAENIDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLALDAST 478

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+ PF
Sbjct: 479 GQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIREELDIPVKLIGFGEKIDDIGPF 538

Query: 302 VAKDFSAVIT 311
            +++F   + 
Sbjct: 539 HSENFMRGLL 548


>gi|41055859|ref|NP_957282.1| signal recognition particle 54 kDa protein [Danio rerio]
 gi|28277732|gb|AAH45474.1| Signal recognition particle 54 [Danio rerio]
 gi|45709065|gb|AAH67588.1| Signal recognition particle 54 [Danio rerio]
 gi|182891276|gb|AAI64217.1| Srp54 protein [Danio rerio]
          Length = 504

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E +      
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCAALLEADVNIKLVKQLRENVKAAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ +R++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRRMIQHAVFKELVKLVDPGVKAWT-PTKGKNNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ ++
Sbjct: 122 AYYFQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIAAEGVEKFKS 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L+  +   P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEM------LQVSNAVQPDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|195441672|ref|XP_002068627.1| GK20323 [Drosophila willistoni]
 gi|194164712|gb|EDW79613.1| GK20323 [Drosophila willistoni]
          Length = 508

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++     + +E+   L+ +D+ + + +++ E +      
Sbjct: 3   LADLGRKITTALHSLSKATVINEEALNAMLKEICAALLEADVNIRLVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      + +VI+ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELIKLVDPGVKPYQ-PVKGKANVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A E     + 
Sbjct: 122 AYHYQKRNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L   +  +P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEMIIVDTSGRHKQEESLFEEM------LAVANAVSPDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|295396042|ref|ZP_06806226.1| cell division protein FtsY [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971130|gb|EFG47021.1| cell division protein FtsY [Brevibacterium mcbrellneri ATCC 49030]
          Length = 377

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 118/318 (37%), Positives = 182/318 (57%), Gaps = 11/318 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             ++V +E  + + KL    A ++  +  G+  ++S   LD+   EE+ED LI +D+GV 
Sbjct: 61  PPREVPTEPTTRLAKLRNRLAKSNNAMGRGLLALLSRDTLDEATWEEIEDTLIVADLGVD 120

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF------NWDFSHRPHVIL 115
            A ++V+ L  +     V   R L  V  L+ + L+ +  P              P V+L
Sbjct: 121 TATELVDNLRERVR---VLGTRDLSTVRALLREELIKVVDPTMDRTLRTETGGDEPSVVL 177

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNG GKTT +GK+++ +  +   V+L A DTFR+AA +QL  W +R   + V    G
Sbjct: 178 VVGVNGAGKTTTVGKIARVLVASDRTVLLGAADTFRAAAAEQLTTWGERVGVETVRGPEG 237

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR--LDPHAPHSV 233
           SD A++AY A ++     VDV++IDTAGRL N   LM  +GK+ +V  R   + H    V
Sbjct: 238 SDPASVAYSAVERGLKDNVDVVLIDTAGRLQNKKGLMDELGKVKKVATRPLGEGHELDEV 297

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLDATTGQN ++Q ++F  V   +G+++TK+DGTA+GG ++ +     +PV  +G+GE
Sbjct: 298 LLVLDATTGQNGMQQAKVFAEVVNVSGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGE 357

Query: 294 GINDLEPFVAKDFSAVIT 311
           G +DL PFV +DF   + 
Sbjct: 358 GADDLAPFVVEDFVDALL 375


>gi|269127634|ref|YP_003301004.1| signal recognition particle-docking protein FtsY [Thermomonospora
           curvata DSM 43183]
 gi|268312592|gb|ACY98966.1| signal recognition particle-docking protein FtsY [Thermomonospora
           curvata DSM 43183]
          Length = 389

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 177/310 (57%), Gaps = 9/310 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           S   + +L    A +   L   +  ++S   LD+   +E+ED LI +DIGVAVA++I E 
Sbjct: 81  SAGRLVRLRARLARSQNALGHVLLGLLSRDTLDEDAWDEIEDTLISADIGVAVAREITEA 140

Query: 70  LLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFS-----HRPHVILVVGVNGV 122
           L T+           +  +   EL+ ++     +  +          RP V++VVGVNG 
Sbjct: 141 LRTRVQVMGARTPEEVRALLREELLRQVTNGFDEKTDRRLRTARHGDRPAVVMVVGVNGT 200

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W  R  A+ V    G+D  ++A
Sbjct: 201 GKTTTCGKLARVLVGDGNTVLLGAADTFRAAAADQLETWGKRVGAEVVRKGEGADPGSVA 260

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A +Q    KVD +IIDTAGRLH  + LM  +GK+ RV+++        VL VLDATTG
Sbjct: 261 FDAVRQGIEGKVDTVIIDTAGRLHTKTGLMDELGKVKRVVEKQAT--VDEVLLVLDATTG 318

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN ++Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF 
Sbjct: 319 QNGMQQARVFAEVVNVTGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFE 378

Query: 303 AKDFSAVITG 312
           A+ F   I G
Sbjct: 379 AEPFVDAIIG 388


>gi|144898174|emb|CAM75038.1| Signal recognition particle GTPase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 455

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +  V E L +    L+ +D+ ++V +  V  +  +   
Sbjct: 2   FESLSQRLSGVFDKLTGRGALSEADVTEALREVRVALLEADVALSVVKDFVGRVKARAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q V+  V + +   L       N +    P VIL+VG+ G GKTT  GKL
Sbjct: 62  QDVIKSVTPGQLVVKIVHDELIATLGTDGVELNLNAV-PPAVILMVGLQGSGKTTTSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + ++     KV+LA+ D +R AA  QL+I A +     +   +G    A+   A    + 
Sbjct: 121 AVRLKKDKKKVLLASLDVYRPAAQQQLEILARQADVGSLPIIMGEMPVAITKRALDVGRK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV+I+DTAGRLH +  LMA +  +  V K      P   L V+DA  GQ+A+     
Sbjct: 181 EGYDVVILDTAGRLHIDQELMAEVAAVRDVAK------PVETLLVVDAMIGQDAVTLAHE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+++T++DG +RGG  + +      P+ FLG+GE +  LEPF     +  I 
Sbjct: 235 FNEKVGVTGMVLTRVDGDSRGGAALSMRAVTGRPIKFLGMGEKLEALEPFHPDRLAGRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|139474212|ref|YP_001128928.1| cell division protein FtsY [Streptococcus pyogenes str. Manfredo]
 gi|134272459|emb|CAM30716.1| putative cell division protein FtsY [Streptococcus pyogenes str.
           Manfredo]
          Length = 516

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 118/302 (39%), Positives = 173/302 (57%), Gaps = 7/302 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRTGFSARLNSFFANFRRVDEEFFEDLEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS----HRPHVILVVGVNGVGKTTVIG 129
              ++      L  V  ++ K++    K   ++ +        V+L VGVNGVGKTT IG
Sbjct: 273 AKLENAKKPDALKRV--IVEKLVGIYEKDGRYNEAINYQDGLTVMLFVGVNGVGKTTSIG 330

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A
Sbjct: 331 KLAYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGMEKA 390

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            AK VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q 
Sbjct: 391 VAKGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLPDAPHETLLALDASTGQNALSQA 450

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   
Sbjct: 451 KEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKVDDIGEFHSEDFMKG 510

Query: 310 IT 311
           + 
Sbjct: 511 LL 512


>gi|194750277|ref|XP_001957554.1| GF23972 [Drosophila ananassae]
 gi|190624836|gb|EDV40360.1| GF23972 [Drosophila ananassae]
          Length = 508

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++     + +E+   L+ +D+ + + +++ E +      
Sbjct: 3   LADLGRKITTALHSLSKATVINEEALNAMLKEICAALLEADVNIRLVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      + +VI+ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELIKLVDPGVKPYQ-PIKGKANVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A E     + 
Sbjct: 122 AYHYQKRNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +  +   +       P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEMIIVDTSGRHKQEESLFEEMLAVANAVN------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|315651824|ref|ZP_07904828.1| signal recognition particle protein [Eubacterium saburreum DSM
           3986]
 gi|315485954|gb|EFU76332.1| signal recognition particle protein [Eubacterium saburreum DSM
           3986]
          Length = 451

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 144/305 (47%), Gaps = 15/305 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S S KL+    ++    RL +       +E+   L+ +D+   V +  ++ +  K  
Sbjct: 2   AFESLSEKLQNVFKNLRGKGRLSEDDVRIGLKEVRLALLEADVSFKVVKDFIKGIQEKAT 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E +  ++   +       S    VI++ G+ G GKTT   K
Sbjct: 62  GSNVLNSLTPAQQVIKIVNEEMVSLMGSETTELKIKPSGDITVIMMAGLQGAGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K+   G   +L   D +R AAI+QLK   ++                +A +A + A+
Sbjct: 122 LAAKLKKKGNSPVLVGCDIYRPAAIEQLKRNGEKVDVPVFDMGTNHKPVEIAKKALEYAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +++ +DTAGRLH +  +M  + ++       D      ++ V+DA TGQ+A+   E
Sbjct: 182 ENHHNIVFLDTAGRLHIDEDMMNELIEIK------DNVNVDDIILVVDAMTGQDAVNVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     TG+I+TK+DG  RGG  + +      P+ ++G+GE ++DLE F     ++ I
Sbjct: 236 TFNEKLDITGVILTKLDGDTRGGAALSVRAVTGKPILYVGMGEKLSDLEQFYPDRMASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|195337623|ref|XP_002035428.1| GM14699 [Drosophila sechellia]
 gi|194128521|gb|EDW50564.1| GM14699 [Drosophila sechellia]
          Length = 508

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++     + +E+   L+ +D+ + + +++ E +      
Sbjct: 3   LADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      + +V++ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +     + 
Sbjct: 122 AYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +  +   +       P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVS------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|139436969|ref|ZP_01771129.1| Hypothetical protein COLAER_00102 [Collinsella aerofaciens ATCC
           25986]
 gi|133776616|gb|EBA40436.1| Hypothetical protein COLAER_00102 [Collinsella aerofaciens ATCC
           25986]
          Length = 461

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 129/273 (47%), Gaps = 13/273 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102
           ++   L+ +D+   V ++ V +   +    +V       Q V+  V + + +ML      
Sbjct: 3   DIRMALLEADVNFKVVKEFVAKTKERCMTAEVMESLSPAQNVVKIVLDELTEMLGSTESK 62

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
             +  +  P+VI++VG+ G GKTT   KL+  +   G   +L A D +R AA DQL    
Sbjct: 63  LVFS-NRIPNVIMLVGLQGSGKTTAAVKLAYLLKKQGRSPLLVACDVYRPAAADQLATLG 121

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                     + G+    +A  A ++A     DV+I+DTAGRL  +  +M     + + +
Sbjct: 122 GEIGVPVFRGD-GAHPVDIAKGAIQEAVDHLRDVVIVDTAGRLQIDEQMMQEAVYIKKAV 180

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           K      P  VL V+DA TGQ+ +  V  F       G+I++K+DG ARGGG + +    
Sbjct: 181 K------PDQVLMVVDAMTGQDIVNVVSTFAERTDFDGVIISKLDGDARGGGALSVRQVT 234

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+ +GE  + LEPF     +  I G  D
Sbjct: 235 GKPIKFVSMGEKPDSLEPFYPDRMAKRILGMGD 267


>gi|306827790|ref|ZP_07461061.1| cell division protein FtsY [Streptococcus pyogenes ATCC 10782]
 gi|304430014|gb|EFM33052.1| cell division protein FtsY [Streptococcus pyogenes ATCC 10782]
          Length = 516

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 169/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRTGFSARLNSFFANFRRVDEEFFEDLEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    V +L+             ++     V+L VGVNGVGKTT IGKL
Sbjct: 273 AKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAINYQDGLTVMLFVGVNGVGKTTSIGKL 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 333 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGMEKAVA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 393 KGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLPDAPHETLLALDASTGQNALSQAKE 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   + 
Sbjct: 453 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKVDDIGEFHSEDFMKGLL 512


>gi|209153928|gb|ACI33196.1| Signal recognition particle 54 kDa protein [Salmo salar]
          Length = 504

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCAALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ +R++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRRMIQHSVFKELVKLVDPGVKAWT-PTKGKNNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVVIAAEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L+  +   P +++ V+DA+ GQ    Q + 
Sbjct: 182 ESFEIIIVDTSGRHKQEDSLFEEM------LQVSNAVQPDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+DLEPF  + F + + 
Sbjct: 236 FKDKVEVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDLEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|332685825|ref|YP_004455599.1| signal recognition particle receptor protein FtsY [Melissococcus
           plutonius ATCC 35311]
 gi|332369834|dbj|BAK20790.1| signal recognition particle receptor protein FtsY (alpha subunit)
           (TC 3.A.5.1.1) [Melissococcus plutonius ATCC 35311]
          Length = 460

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 122/299 (40%), Positives = 178/299 (59%), Gaps = 7/299 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI + L  +
Sbjct: 151 KKYEKGLTKTRKTFSQRLNELFANFRSVDEDFFEELEETLIGADVGFETSLKITDSLRQE 210

Query: 74  RYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              ++V     + +     + +L  +  +      N        V+L VGVNGVGKTT I
Sbjct: 211 VKLRNVKKPAEVQNTIIEKMVDLYEEEGINEDNSLNIQTDQ-LTVMLFVGVNGVGKTTSI 269

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G KV++AA DTFR+ AIDQL +W +R +   +  + G D AA+ Y++ K 
Sbjct: 270 GKLAYSYKQQGKKVVMAAADTFRAGAIDQLIVWGERANVKVIHGKAGGDPAAVVYDSIKY 329

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ ++ D+L+IDTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q
Sbjct: 330 AKEEQADILLIDTAGRLQNKVNLMNELEKIKRVIQREIPEAPHEVLLVIDATTGQNAMSQ 389

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           V+ F      TGLI+TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF   DF+
Sbjct: 390 VKQFKETTDVTGLILTKLDGTAKGGIIIAIRNELHLPVKLVGLGEGINDLEPFSTNDFA 448


>gi|195587932|ref|XP_002083715.1| GD13881 [Drosophila simulans]
 gi|194195724|gb|EDX09300.1| GD13881 [Drosophila simulans]
          Length = 508

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++     + +E+   L+ +D+ + + +++ E +      
Sbjct: 3   LADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      + +V++ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +     + 
Sbjct: 122 AYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +  +   +       P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVS------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|284048839|ref|YP_003399178.1| signal recognition particle-docking protein FtsY [Acidaminococcus
           fermentans DSM 20731]
 gi|283953060|gb|ADB47863.1| signal recognition particle-docking protein FtsY [Acidaminococcus
           fermentans DSM 20731]
          Length = 305

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 116/303 (38%), Positives = 175/303 (57%), Gaps = 4/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +S++ +L  G + T     E + D++ +   LD+   +E+E +L+  D+G+   +KI+  
Sbjct: 1   MSFMEQLKDGLSKTRKNFTERMEDLVGASVDLDEDFMDEMEMILVAGDVGIKTTEKIMAA 60

Query: 70  LLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      + + S    L  +   I  +L   +      F   P ++LVVGVNGVGKTT I
Sbjct: 61  LRKAAATRQIKSPAEALPFLKSYIADLLK--TTGPRMRFKGHPSIVLVVGVNGVGKTTTI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS      G KVM+ A DTFR+ A +QL+IW  +   D +    G+D AA+ Y+  K 
Sbjct: 119 GKLSNYYRLMGYKVMMCAADTFRAGATEQLQIWGKKAQVDVIAHGDGADPAAVVYDGVKA 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A A+K DVL +DTAGRLHN + LM  + K+ RV+++  P  PH  L VLDATTGQNA+ Q
Sbjct: 179 AIARKADVLFVDTAGRLHNKTNLMKELDKIYRVIRKEIPDGPHETLLVLDATTGQNAISQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F   A  TG+++TK+DGTA+GG ++ I     + V ++G+GEG+ D  PF  + F  
Sbjct: 239 AKIFLETAHVTGVVLTKLDGTAKGGVVVAIKEELGLDVKWIGIGEGMMDFRPFDPQQFVE 298

Query: 309 VIT 311
            + 
Sbjct: 299 ALF 301


>gi|237785774|ref|YP_002906479.1| signal recognition particle receptor [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758686|gb|ACR17936.1| signal recognition particle receptor [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 643

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 110/304 (36%), Positives = 171/304 (56%), Gaps = 5/304 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             I +L    + +   + +G+  I+    LD+   E++ED L+ +D+G A   K+V+ L 
Sbjct: 342 GRIHRLRGRLSRSQNAIGKGVLGILGGGDLDEDAWEDVEDTLVMADLGTAATMKVVDSLR 401

Query: 72  TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVI 128
            K  ++ VS ++    +    LI      + +      +  +P VILVVGVNG GKTT  
Sbjct: 402 EKIASQGVSSEQEARALLRQALIESCHPEMDRSIRAMPYEGKPAVILVVGVNGTGKTTTA 461

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++ ++  G  V+L A DTFR+AA DQL+ W  R +A  V     +D A++A++A   
Sbjct: 462 GKLARVLTAMGHSVLLGAADTFRAAAADQLEAWGSRVNARTVRGPEDADPASVAFDAVAA 521

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
             A   DV+++DTAGRLH  + LM  +GK+ RV+++        VL VLDAT GQN L Q
Sbjct: 522 GVADHADVVVLDTAGRLHTKNNLMDQLGKVKRVVEKK--AVVDEVLLVLDATVGQNGLVQ 579

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F      TG+++TK+DGTA+GG +  +     +PV  +G+GEG++DL PF  + F  
Sbjct: 580 ARIFAETVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKMVGLGEGVDDLAPFEVEGFVD 639

Query: 309 VITG 312
            + G
Sbjct: 640 ALLG 643


>gi|301120250|ref|XP_002907852.1| signal recognition particle, putative [Phytophthora infestans
           T30-4]
 gi|262102883|gb|EEY60935.1| signal recognition particle, putative [Phytophthora infestans
           T30-4]
          Length = 511

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    KL+  +  +  +  +DD V     +E+   L+ SD+ V + +++ + +      
Sbjct: 3   LAELGSKLQGALAKLNRTTVVDDEVFNALLKEICGALLESDVQVKLVRQLRDNVKLAVNL 62

Query: 77  KDVSVQRVLYD-----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +D S            V + I +ML P ++P+        +VI+ VG+ G GKTT I K 
Sbjct: 63  EDASSGVNRRRLIQKSVVDQIVQMLEPEAQPYKMKKGQS-NVIMFVGLQGSGKTTSIAKF 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  +   DTFR+ A DQLK  + +    F  S   +D   +A E   Q +A
Sbjct: 122 AHFYQRKGWKTCMVCADTFRAGAFDQLKQNSTKLRIPFYGSYTEADPVRIAEEGVAQFRA 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++++DT+GR    + L A + ++   ++      P  V+ V+D+T GQ    Q   
Sbjct: 182 ENYELILVDTSGRHKQETDLFAEMREVSAAVQ------PDDVVFVMDSTIGQAVFDQASA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V     P+ F G GE   D E F A+ F + + 
Sbjct: 236 FRETVDVGSVIITKLDGHAKGGGALSAVAATGSPIIFYGTGEHFADFESFNAQSFVSRLM 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|159036831|ref|YP_001536084.1| signal recognition particle-docking protein FtsY [Salinispora
           arenicola CNS-205]
 gi|157915666|gb|ABV97093.1| signal recognition particle-docking protein FtsY [Salinispora
           arenicola CNS-205]
          Length = 395

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 114/304 (37%), Positives = 171/304 (56%), Gaps = 5/304 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             + +L    + +     +G+  ++S  RLD+   EE+ED LI +D+G+   ++IV+ L 
Sbjct: 86  GRLVRLRSRLSRSQSVFGKGLLGLLSRDRLDEDTWEEIEDSLITADVGIDSTREIVDRLR 145

Query: 72  TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVI 128
            +           L  +  +EL++ +   L +  N       P V+LVVGVNG GKTT  
Sbjct: 146 ERTRVLGTRTVTELRALLATELVNALDPELDRALNTAPKDGVPAVLLVVGVNGAGKTTTC 205

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK+++ +   G  V+L A DTFR+AA DQL+ WA R  A+ V    G+D A++A++A K+
Sbjct: 206 GKVARVLVADGRSVILGAADTFRAAAADQLETWAGRVGAETVRGPEGADPASVAFDAVKR 265

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
                VD ++IDTAGRL N   LM  +GK+ RV+++  P      L +LDATTGQN L Q
Sbjct: 266 GIETGVDTVLIDTAGRLQNKVGLMDELGKVKRVVEKHGP--IDETLLILDATTGQNGLEQ 323

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F      TG+ +TK+DGTA+GG +I +     IPV  +G+GEG +DL PF    F  
Sbjct: 324 ARVFTEAVDVTGVALTKLDGTAKGGIVIAVQRKLGIPVKLVGLGEGKDDLAPFDPAQFVD 383

Query: 309 VITG 312
            + G
Sbjct: 384 ALLG 387


>gi|17647949|ref|NP_523931.1| signal recognition particle protein 54k [Drosophila melanogaster]
 gi|5679038|gb|AAD46831.1|AF160891_1 BcDNA.GM09489 [Drosophila melanogaster]
 gi|7295492|gb|AAF50806.1| signal recognition particle protein 54k [Drosophila melanogaster]
 gi|220952956|gb|ACL89021.1| Srp54k-PA [synthetic construct]
          Length = 508

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++     + +E+   L+ +D+ + + +++ E +      
Sbjct: 3   LADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      + +V++ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A +     + 
Sbjct: 122 AYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +  +   +       P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVS------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|159042909|ref|YP_001531703.1| signal recognition particle protein [Dinoroseobacter shibae DFL 12]
 gi|157910669|gb|ABV92102.1| signal recognition particle protein [Dinoroseobacter shibae DFL 12]
          Length = 504

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +        E+   L+ +D+ + VA+  ++ +  K   
Sbjct: 2   FENLSDRLSGVFDRLTKQGALSEADVATALREVRVALLEADVSLPVARDFIKAVQEKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L     P      + P  IL+VG+ G GKTT   K+
Sbjct: 62  QAVTKSVTPGQQVVKIVHDELVHVLQGDEDPGALKIDNPPAPILMVGLQGGGKTTTTAKI 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G K+++A+ D  R AA++QL I   +   D +    G D  A+A  A  QA 
Sbjct: 122 AKRLKERDGKKILMASLDVNRPAAMEQLAILGAQIGVDTLPIVKGEDPVAIARRAKTQAS 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  +  LMA       V    D   P   L V+D  TGQ+A+   E
Sbjct: 182 LGGYDVYMLDTAGRLSIDEELMAQ------VEAVRDVANPRETLLVVDGLTGQDAVTTAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F     +  I
Sbjct: 236 NFDDRIGITGVVLTRMDGDGRGGAALSMRAVTGRPIRFVGLGEKMDALETFEPDRVAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|312868303|ref|ZP_07728503.1| signal recognition particle-docking protein FtsY [Streptococcus
           parasanguinis F0405]
 gi|311096048|gb|EFQ54292.1| signal recognition particle-docking protein FtsY [Streptococcus
           parasanguinis F0405]
          Length = 553

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 121/310 (39%), Positives = 171/310 (55%), Gaps = 3/310 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           +V  +  +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA
Sbjct: 240 EVEPQQETIQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVA 299

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHRPHVILVVGVNG 121
             + EEL  +   ++      L  V       L      FN    F     V+L VGVNG
Sbjct: 300 SNLTEELRYEARLENAKKPDALKRVIIEKLVDLYEKDGQFNEAIRFQDGLTVMLFVGVNG 359

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V     SD A++
Sbjct: 360 VGKTTSIGKLAHRYKQEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASV 419

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++  ++A A+ +DVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+T
Sbjct: 420 VFDGMERAIAENIDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLALDAST 479

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+ PF
Sbjct: 480 GQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIREELDIPVKLIGFGEKIDDIGPF 539

Query: 302 VAKDFSAVIT 311
            +++F   + 
Sbjct: 540 HSENFMRGLL 549


>gi|284992402|ref|YP_003410956.1| signal recognition particle-docking protein FtsY [Geodermatophilus
           obscurus DSM 43160]
 gi|284065647|gb|ADB76585.1| signal recognition particle-docking protein FtsY [Geodermatophilus
           obscurus DSM 43160]
          Length = 407

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 115/314 (36%), Positives = 178/314 (56%), Gaps = 5/314 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    S   + +L    A +   L  G+  +++  RL +   EE+E+ L+ +D+GVA  Q
Sbjct: 96  ETPPPSAGRLVRLRSRLARSQSNLGRGLLTVLARERLTEDDWEEVEETLLAADVGVAATQ 155

Query: 65  KIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDF-SHRPHVILVVGVNG 121
           +IV+ L T+       S   +   +   +  +L P L +    D    RP + LVVGVNG
Sbjct: 156 QIVDRLRTQSMVLATASGPELRRLLVRELTAVLGPDLDRSLGVDRHDGRPGIALVVGVNG 215

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT +GK+++ +   G  V+L A DTFR+AA DQL+ W +R     V    G+D A++
Sbjct: 216 AGKTTTVGKIARVLVGDGKSVVLGAADTFRAAAADQLETWGERVGVLTVRGREGADPASV 275

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A +     +VD ++IDTAGRLH    LM  +GK+ RV++++ P     VL VLDATT
Sbjct: 276 AFDAARTGIEGEVDTVVIDTAGRLHTKGGLMDELGKIRRVVEKVAPVT--EVLLVLDATT 333

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN + Q  +F      TG+++TK+DGTA+GG ++ +     IPV  +G+GEG +DL PF
Sbjct: 334 GQNGVVQARVFTEAVTVTGVVLTKLDGTAKGGIVVAVQRELGIPVKLVGLGEGADDLAPF 393

Query: 302 VAKDFSAVITGCLD 315
             + F+  + G  D
Sbjct: 394 EPEAFAEALVGGAD 407


>gi|227499525|ref|ZP_03929632.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Anaerococcus
           tetradius ATCC 35098]
 gi|227218404|gb|EEI83655.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Anaerococcus
           tetradius ATCC 35098]
          Length = 395

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 186/311 (59%), Gaps = 9/311 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQK 65
           +     +  KL  G + T  +    + ++ +   ++DD + +ELE++LI +DIG+    +
Sbjct: 88  SENDKGFFAKLKDGLSKTRDQFTSNLKNLFTRNVKIDDDLYDELEEILISADIGMTSTVE 147

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVN 120
           IV+EL  +   + +    ++Y V   + +++       N D   +       VILV+GVN
Sbjct: 148 IVDELREEIKKRSIKDVDLIYPV---LKEIMTRKLDEKNLDNDLKLKDNELSVILVIGVN 204

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGKL+  +   G KVMLAA DTFR+AAI+QL  WA+R + + +  + GSD +A
Sbjct: 205 GVGKTTTIGKLANNLKKEGKKVMLAAADTFRAAAIEQLGEWAERANIEMISHQEGSDPSA 264

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A K A+AK VDVLI DTAGRLHN   LM  + K+ + +      A    L  LDAT
Sbjct: 265 VIFDAIKSAKAKNVDVLICDTAGRLHNKKNLMKELEKINKTIATHANKANRDNLLALDAT 324

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q+  F  V   +GLI+TK+DGTA+GG + P+ V  ++PV ++GVGEGI+DLE 
Sbjct: 325 TGQNAVSQLREFKNVTDISGLILTKLDGTAKGGVIFPLQVELEVPVKYIGVGEGIDDLEK 384

Query: 301 FVAKDFSAVIT 311
           F ++ F   + 
Sbjct: 385 FNSELFVEAMF 395


>gi|218283536|ref|ZP_03489526.1| hypothetical protein EUBIFOR_02116 [Eubacterium biforme DSM 3989]
 gi|218215804|gb|EEC89342.1| hypothetical protein EUBIFOR_02116 [Eubacterium biforme DSM 3989]
          Length = 319

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 108/294 (36%), Positives = 161/294 (54%), Gaps = 4/294 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K   G   +     + +  + ++   +DD + E++  +L+ SD+G+  AQKIV+    +
Sbjct: 18  DKYLSGLDRSKKSFGDRMRALSNNFHGIDDDLLEQIMVILLESDVGIHTAQKIVDAF--E 75

Query: 74  RYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              K V     +L  +  +++      S          P VIL+VGVNG GKTT   KL 
Sbjct: 76  SNGKHVKDYDSMLDYLISILYDFYDESSDEPIKINEEGPTVILMVGVNGSGKTTTSAKLI 135

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +   + G KV +AA DTFR+ AIDQ+  WA+R     +  ++  D +++  +A + A+  
Sbjct: 136 QYYKEQGKKVAVAAADTFRAGAIDQIDTWANRLGVPCIKGKMNQDPSSVLVDACRYAKEN 195

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            VD+LI DTAGRL N + LM  + KM RV++R    AP  V  VLDATTGQN + Q ++F
Sbjct: 196 DVDILICDTAGRLQNKTNLMNELSKMHRVVQREIEGAPQEVWLVLDATTGQNGISQAKVF 255

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                 TG+++TKMDGTA+GG ++ I     +PV FLG+GE   DL PF    F
Sbjct: 256 LEATDVTGIVLTKMDGTAKGGVVLAIRDLLHLPVRFLGLGEKPADLRPFDINAF 309


>gi|154509174|ref|ZP_02044816.1| hypothetical protein ACTODO_01695 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798808|gb|EDN81228.1| hypothetical protein ACTODO_01695 [Actinomyces odontolyticus ATCC
           17982]
          Length = 527

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 147/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +    + S   L +   +    ++   LI +D+ + V ++   ++  K Y 
Sbjct: 2   FGNLSDRLSQSFRSLRSRGVLTESDVDHAISDIRRALIDADVALPVVRQFTTQVREKAYG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              S      Q+V+  V E + ++L   ++  N+  S  P V ++ G+ G GKTT+ GKL
Sbjct: 62  AARSKALNPGQQVVSIVHEELVEILGGATRELNFAESG-PTVFMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            K + + G  V+L A D  R  A+ QL++  +R        E G+   D   +A    + 
Sbjct: 121 GKWLREEGKTVLLVASDLQRPNAVQQLQVVGERAGVKVWAPEPGNGVGDPVEVARSGVEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+   ++V+I+DTAGRL  +  +M         +   D   PH ++ VLDA  GQ+A+  
Sbjct: 181 ARQSGINVVIVDTAGRLGVDQEMMEQ------AIAIRDAVNPHEIMFVLDAMVGQDAVST 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G TG++++K+DG ARGG  + +      P+ F   GEG++D E F A   + 
Sbjct: 235 STAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGAPILFASTGEGLDDFERFHADRMAG 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|225850967|ref|YP_002731201.1| signal recognition particle protein [Persephonella marina EX-H1]
 gi|225645352|gb|ACO03538.1| signal recognition particle protein [Persephonella marina EX-H1]
          Length = 442

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 145/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + +    +  +   +RLD+   EE    +   LI +D+ + V +  +++L  K   
Sbjct: 2   FELLTERFSGIVEKLKRVKRLDEKTVEEALKDIRRALIEADVNIEVIKSFLDDLKQKLVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V     + + V+  + + +  +L   + P        P VI++VG+ G GKTT  GKL
Sbjct: 62  QEVIKGLNAGETVIKLIYDEVLNILGEEA-PLQRS-EKPPTVIMLVGLQGTGKTTTAGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G KV L + D  R AA  QL   A          E   DA  L  +  ++A+ 
Sbjct: 120 AKWLKSKGYKVGLVSTDVRRPAAGKQLCTLAKTIDVPCFIDEEEKDAVRLTEKVIQKAKE 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +  +I+DTAGRLH +  LM  +  +   +       P  +L V DA  GQ+A+   E 
Sbjct: 180 AGLSHIILDTAGRLHIDQELMDELVHIKEKVN------PSEILYVADAMQGQDAISTAEE 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G TG+I+TK+DG A+GG  + +     +P+ F+GVGE I D + F     +  I 
Sbjct: 234 FHNRVGLTGVILTKLDGDAKGGIALSVRKVIGVPIKFIGVGEKIEDFQQFHPDRIAQRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GLGD 297


>gi|27904538|ref|NP_777664.1| FtsY protei [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|31340085|sp|Q89B28|FTSY_BUCBP RecName: Full=Cell division protein ftsY homolog
 gi|27903935|gb|AAO26769.1| FtsY protei [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 397

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 115/303 (37%), Positives = 181/303 (59%), Gaps = 2/303 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             S++  LT     T       + ++   ++  + + +++E+ L+ SDIGV   +++V+ 
Sbjct: 90  KNSFLLTLTTKLVRTKEAFSIKLKNLFFKKKTYNSLLDDIEEQLLVSDIGVRTTRELVDS 149

Query: 70  LLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L+      ++  +  ++  +   + K+L  +  P N ++ +   VILVVGVNGVGKTT+I
Sbjct: 150 LIKVSTQHELKNLNLIIEILKSKMKKILNKVEGPLNINYKN-LFVILVVGVNGVGKTTLI 208

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K     G  V+LAAGDTFR+AAIDQLK+W +  S   +  EIGSD A++ Y+A K 
Sbjct: 209 GKLAKNYKKKGKSVILAAGDTFRAAAIDQLKLWGEINSVSVITREIGSDPASVVYDAIKI 268

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ K +D+LIIDTAGRLHN + LM  + K+ RV+ ++D       + VLDA  GQN+++Q
Sbjct: 269 AKLKCIDILIIDTAGRLHNKNNLMEELKKIKRVIHKIDSTISQETMLVLDACIGQNSIKQ 328

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V++FH     TGL++TK+D TA+GG +  I     IPV ++  GE   D++ F +  F  
Sbjct: 329 VKIFHESLNVTGLVITKLDSTAKGGVIFSIAQEFLIPVRYISFGEDFEDIQVFNSNIFVN 388

Query: 309 VIT 311
            I 
Sbjct: 389 AIL 391


>gi|258645803|ref|ZP_05733272.1| signal recognition particle-docking protein FtsY [Dialister invisus
           DSM 15470]
 gi|260403173|gb|EEW96720.1| signal recognition particle-docking protein FtsY [Dialister invisus
           DSM 15470]
          Length = 313

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 182/308 (59%), Gaps = 5/308 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + ++ K+  G   T   L + I  + I   ++DD   E+LE +L+  D+GV     ++ +
Sbjct: 1   MGFLDKVRNGLKKTKESLIKNIETVVIGYAKIDDDFLEDLEMVLLSGDLGVRTTDYLMRQ 60

Query: 70  LLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +        +S    +    E  +  ML    K    D SH P V LVVGVNGVGKTT I
Sbjct: 61  IRRGVTEGMISSTNEVMPFMEKTVVNMLTEDGKE---DISHHPEVYLVVGVNGVGKTTTI 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS +    G KV+LAA DTFR+AA +QL IWA RT AD V    G+D AA+A++A   
Sbjct: 118 GKLSAQFRKEGKKVLLAAADTFRAAASEQLSIWAKRTGADIVKHAEGADPAAVAFDAVSA 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+  DV++IDTAGRL     LM  + K+ RV+K++ P APH  + VLDATTGQNA+ Q
Sbjct: 178 AKARGSDVVLIDTAGRLQTKVNLMEELAKISRVVKKVIPDAPHQTILVLDATTGQNAVSQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F  +   TG+++TK+DGTA+GG ++ I     +P+ ++G+GE  +DL+ F A +F+ 
Sbjct: 238 AQNFGEIVPLTGVVLTKLDGTAKGGVVLSIHEELHVPIRWIGLGEREDDLQRFNALEFAK 297

Query: 309 VITGCLDY 316
            +    D+
Sbjct: 298 ALFETEDH 305


>gi|196016017|ref|XP_002117863.1| signal recognition particle 54 [Trichoplax adhaerens]
 gi|190579532|gb|EDV19625.1| signal recognition particle 54 [Trichoplax adhaerens]
          Length = 505

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+ + +  + ++  +++ V     +E+   L+ SD+ V + +++ E +      
Sbjct: 3   LAELGRKITDALRSLSNATIINEEVVQALLKEICAALLESDVNVQLVKRLRENVRAAIDF 62

Query: 73  KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ +R+L   V   + K++ P  K +      + +VI+ VG+ G GKTT   K+
Sbjct: 63  EEMAAGLNKRRILQRAVFNELCKLVDPGVKAWQ-PTKGKNNVIMFVGLQGSGKTTTCTKM 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  + +    F  S    D   +A++  ++ + 
Sbjct: 122 AHYYQRKGWKTCLICADTFRAGAFDQLKQNSTKARIPFYGSYTEMDPVVIAHDGVEKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   +       P +++ V+DAT GQ    Q   
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQLSNTIT------PDNIIFVMDATIGQACEAQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I D E F  + F + + 
Sbjct: 236 FKEKVDVASVIITKLDGHAKGGGSLSAVAATRSPIIFIGTGEHIEDFEQFKTRPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|154245411|ref|YP_001416369.1| signal recognition particle protein [Xanthobacter autotrophicus
           Py2]
 gi|154159496|gb|ABS66712.1| signal recognition particle protein [Xanthobacter autotrophicus
           Py2]
          Length = 513

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +     L +        E+   LI +D+ + V +   + +  +   
Sbjct: 2   FDTLSDRLGGILDKLKRRGALTEADVGEAMREVRRALIEADVALDVVRSFTDRVKNRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + +   L   + P + +       IL+VG+ G GKTT   K+
Sbjct: 62  VEVIKSVTPGQMVVKIVHDELVATLGSDADPIDLNAPAPVP-ILMVGLQGSGKTTSTAKI 120

Query: 132 SKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++++ G  KV++A+ DT R AA++QL     +     +    G  A  +A  A + A+
Sbjct: 121 AKRLTERGKRKVLMASLDTRRPAAMEQLATLGKQVEVATLPIVAGQSAVQIAKRAIEAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+++DTAGR+  +  LMA + ++           PH VL V D+ TGQ+A+   +
Sbjct: 181 LGGYDVVMLDTAGRVTLDEALMAEVAEVKAA------TGPHEVLLVADSLTGQDAVNTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+ DG  RGG  + +      P+  LG GE ++ LE F     +  I
Sbjct: 235 AFDGRVGLTGIVLTRADGDGRGGAALSMRAVTGKPIKLLGTGEKMDALEDFDPHRVAGRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|145593846|ref|YP_001158143.1| signal recognition particle-docking protein FtsY [Salinispora
           tropica CNB-440]
 gi|145303183|gb|ABP53765.1| signal recognition particle-docking protein FtsY [Salinispora
           tropica CNB-440]
          Length = 411

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 171/304 (56%), Gaps = 5/304 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             + +L    + +     +G+  ++S  RLD+   EE+ED LI +D+G+   ++IV+ L 
Sbjct: 102 GRLVRLRSRLSRSQSVFGKGLLGLLSRDRLDEETWEEIEDSLITADVGIDSTREIVDRLR 161

Query: 72  TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVI 128
            +           L  +  +EL++ +   L +  +       P V+LVVGVNG GKTT  
Sbjct: 162 ERTRVLGTRTVAELRALLAAELVNALDPELDRALHTAPKDGMPAVLLVVGVNGAGKTTTC 221

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK+++ +   G  V+L A DTFR+AA DQL+ WA R  A+ V    G+D A++A++A K+
Sbjct: 222 GKVARVLVADGRSVILGAADTFRAAAADQLETWAGRVGAETVRGPEGADPASVAFDAVKR 281

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
                VD +++DTAGRL N   LM  +GK+ RV+++  P      L +LDATTGQN L Q
Sbjct: 282 GIETGVDTVLVDTAGRLQNKIGLMDELGKVKRVVEKHGP--IDETLLILDATTGQNGLEQ 339

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F      TG+ +TK+DGTA+GG +I +     IPV  +G+GEG +DL PF    F  
Sbjct: 340 ARVFTEAVDVTGVALTKLDGTAKGGIVISVQRKLGIPVKLVGLGEGKDDLAPFDPAQFVD 399

Query: 309 VITG 312
            + G
Sbjct: 400 ALLG 403


>gi|187934978|ref|YP_001885441.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum B str. Eklund 17B]
 gi|187723131|gb|ACD24352.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum B str. Eklund 17B]
          Length = 302

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 124/302 (41%), Positives = 184/302 (60%), Gaps = 5/302 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   KL  G   T   L + I + +  +  +D+ + EELE++LI SDIG+     I+E L
Sbjct: 4   NLFNKLKDGLTKTRDGLTDKINEALKIAITIDEDLYEELEEILITSDIGMDTTMDIIERL 63

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K   + ++  + +   + E+I ++L+  +     +      V+LV+GVNGVGKTT IG
Sbjct: 64  RKKIRKEKINDPQDVKPALKEVIKEILLEGNYE---EVDDEKKVMLVIGVNGVGKTTSIG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K   AG KV+L A DTFR+AAIDQL++W+ R   D +  + GSD AA+ ++A + +
Sbjct: 121 KLAAKNKRAGKKVLLIAADTFRAAAIDQLEVWSRRAEVDLIKHQEGSDPAAVVFDAIEAS 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D+LI DTAGRLHN   LM  + K+ R++ R         L VLDATTGQNA+ Q 
Sbjct: 181 KARNTDLLICDTAGRLHNKKNLMNELEKINRIIDRELDGVKKETLLVLDATTGQNAVIQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  V    G+I+TK+DGTA+GG +I I  +  IPV ++GVGEGI+DL+ F A+ F+  
Sbjct: 241 KQFMEVCPIDGIILTKLDGTAKGGVVISIKQSLNIPVRYIGVGEGIDDLQEFDAEGFAEA 300

Query: 310 IT 311
           I 
Sbjct: 301 II 302


>gi|194866950|ref|XP_001971975.1| GG15264 [Drosophila erecta]
 gi|190653758|gb|EDV51001.1| GG15264 [Drosophila erecta]
          Length = 508

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++     + +E+   L+ +D+ + + +++ E +      
Sbjct: 3   LADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      + +V++ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A E     + 
Sbjct: 122 AYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +  +   +       P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVS------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|329901026|ref|ZP_08272671.1| Signal recognition particle, subunit Ffh SRP54 [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549273|gb|EGF33849.1| Signal recognition particle, subunit Ffh SRP54 [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 457

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 146/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + + +L + +  +    RL +     +  E+   L+ +D+ +   ++ + ++ TK   
Sbjct: 2   LDNLTQRLAKVVKTMRGEARLTETNTAEMLREVRLALLEADVALPAVREFIAKVKTKAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVI 128
           ++V       Q ++  V + +  M+     P     S     P VIL+ G+ G GKTT +
Sbjct: 62  EEVIGSLSPGQALVGVVQKELAAMMGGDLGPEASLLSFATQPPAVILMAGLQGAGKTTTV 121

Query: 129 GKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           GKL+K + +   K +   + D +R AAI QL+    +  ADF  S        +A  A  
Sbjct: 122 GKLAKFLKEKHKKKVLTVSADVYRPAAIGQLQTVTAQVGADFFPSLTTDKPVDIALAALD 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DVLIIDTAGRL  ++ +MA I  +   +K      P   L V+DA  GQ+A+ 
Sbjct: 182 FAKRHYHDVLIIDTAGRLGIDAEMMAEIAALHAAVK------PIETLFVVDAMLGQDAIN 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+     TG+++TK+DG ARGG  + +      P+ F G  E ++ LE F  +  +
Sbjct: 236 TAKAFNDTLPLTGIVLTKLDGDARGGAALSVRHITGKPIKFAGTAEKLDGLEAFDPQRMA 295

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 296 NRILGMGD 303


>gi|288957356|ref|YP_003447697.1| signal recognition particle, subunit SRP54 [Azospirillum sp. B510]
 gi|288909664|dbj|BAI71153.1| signal recognition particle, subunit SRP54 [Azospirillum sp. B510]
          Length = 461

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 150/305 (49%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   + +L +    +     L +        E+   L+ +D+ + V ++ V ++  +   
Sbjct: 2   FEGLTGRLGDIFDKLRRRGALTEEDVSAALREVRVALLEADVALPVVKQFVTQVKERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + + +ML   S+  N + +    V L+VG+ G GKTT   K+
Sbjct: 62  QEVLKSVTPGQQVIKIVHDNLVEMLGEGSE-INLNAAAPVPV-LMVGLQGSGKTTSTAKI 119

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + ++      KV++A+ D  R AA +QLK+  ++T    +    G D  A+A  A +  +
Sbjct: 120 ALRLKTKERKKVLMASLDVRRPAAQEQLKVLGEQTGVATLPIVPGQDPVAIAKRAIETGR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+++DTAGRL  +  LMA +  +       D   P   L V DA TGQ+A+    
Sbjct: 180 LEGYDVVMLDTAGRLAIDEELMAEVAAV------RDATKPVETLLVADAMTGQDAVTVAT 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+++T++DG ARGG  + +      P+  LGVGE I+ LEPF     +  I
Sbjct: 234 NFNDKVGITGIVLTRIDGDARGGAALSMRQITGKPIKLLGVGEKIDALEPFHPDRIAGRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|332827673|gb|EGK00412.1| signal recognition particle protein [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 439

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 141/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L+     +    ++ +       +++   L+ +D+    A++  E +  K   
Sbjct: 2   FESLSNRLERSFKILKGEGKITEINVAETLKDVRRALLDADVNYKTAKQFTETVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT-VIGK 130
           ++V       Q ++  V + +  ++   +   N   S  P VIL+ G+ G GKTT     
Sbjct: 62  QNVLTAVKPEQLMVKIVHDELAALMGGTATDINLKGS--PAVILMSGLQGSGKTTFSGKL 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
                S  G   +L AGD +R AAI+QLKI   +        E   +   +A  A K A+
Sbjct: 120 AKLLKSKKGKNPLLVAGDVYRPAAIEQLKILGTQIEVPVYSEEDSKNPVQIAQNAIKFAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++IIDTAGRL  +  +M  I  +   +K      P  +L V+D+ TGQ+A+   +
Sbjct: 180 QNGNDLVIIDTAGRLAIDEEMMKEITAVKDAVK------PDEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ L+ F  +  +  I
Sbjct: 234 EFNDRLNFDGVVLTKLDGDTRGGAALSIRSVVDKPIKFVGTGEKMDALDVFHPERMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|114652596|ref|XP_001135953.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]
          Length = 451

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|218458897|ref|ZP_03498988.1| cell division protein [Rhizobium etli Kim 5]
          Length = 235

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 150/228 (65%), Positives = 187/228 (82%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
             ++  I K+L P++KP   D SH+PHVILVVGVNG GKTT IGKL+ K+S AGLKVMLA
Sbjct: 6   RIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKTTTIGKLAAKLSGAGLKVMLA 65

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           AGDTFR+AAI+QLKIWA+RT ++FV +++G+DAA LAY+AF+QA+AKK DVLI+DTAGRL
Sbjct: 66  AGDTFRAAAIEQLKIWAERTKSEFVGTKLGADAAGLAYDAFEQAKAKKCDVLIVDTAGRL 125

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N + LMA + K++RVL +LDP APH+VLQ LDATTGQNAL QVE+F  VAG  GLIMTK
Sbjct: 126 QNKAELMAELEKIVRVLGKLDPDAPHTVLQTLDATTGQNALSQVEIFRNVAGVNGLIMTK 185

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +DGTARGG L+ I   +K+PVYF+GVGEG++DLEPF A+DF+  I G 
Sbjct: 186 LDGTARGGILVAISAKYKLPVYFIGVGEGVDDLEPFEAEDFAHAIAGL 233


>gi|228477265|ref|ZP_04061903.1| cell division protein FtsY [Streptococcus salivarius SK126]
 gi|228251284|gb|EEK10455.1| cell division protein FtsY [Streptococcus salivarius SK126]
          Length = 465

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 118/313 (37%), Positives = 177/313 (56%), Gaps = 3/313 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
             +  AS++ +   K  +    T       + +  ++ RR+D+   EELE++LI SD+GV
Sbjct: 149 PEEVQASKTETEQEKYNRTLKKTRTGFAARLNEFFANFRRVDEEFFEELEEMLILSDVGV 208

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            VA ++ E+L  +   ++V     L    + +L+             +F     V+L VG
Sbjct: 209 NVATQLTEDLRYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYKEQINFQDGLTVMLFVG 268

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     +D 
Sbjct: 269 VNGVGKTTSIGKLAHKYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGAEKADP 328

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LD
Sbjct: 329 ASVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLALD 388

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A+TGQNAL Q + F  +   TGL++TK+DG+A+GG ++ I     IPV  +G GE I+D+
Sbjct: 389 ASTGQNALSQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKIDDI 448

Query: 299 EPFVAKDFSAVIT 311
             F +++F   + 
Sbjct: 449 GEFHSEEFMQGLL 461


>gi|148244704|ref|YP_001219398.1| signal recognition particle, subunit SRP54 [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326531|dbj|BAF61674.1| signal recognition particle, subunit SRP54 [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 466

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 85/309 (27%), Positives = 155/309 (50%), Gaps = 16/309 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT+   ++   L+    + +S   + + +R+ +   L+ +D+ + V +  ++++  
Sbjct: 1   MFDNLTELLQNSFKVLQG--KNKLSESNVKEAIRK-VRRALLEADVALEVIKVFLDKVQI 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K     V       Q  +  V   + K++    +  +   +  P +I+V G+ G GKTT 
Sbjct: 58  KALGLKVGQGLTPSQTFIKLVETELTKIIGGKVESLDLK-TQPPAIIMVAGLQGAGKTTS 116

Query: 128 IGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           + K++  +      KV++ + D +R AAI+QL++ + +   DF  S I    + +   A 
Sbjct: 117 VAKIAFYLKQRENKKVLVVSADVYRPAAIEQLEVLSKQIEVDFFPSTINDKPSDIVANAK 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + AQ +  DVL++DTAGRLH +  +M  I  + +   ++DP      L V+D+ TGQ+A+
Sbjct: 177 RYAQKQFFDVLLVDTAGRLHIDEQMMNEIKILQK---KVDP---IETLFVIDSMTGQDAV 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              ++F      TG+I+TK DG ARGG  + +      P+ FLGVGE I+ LE F  +  
Sbjct: 231 HTAKVFSNALPLTGVILTKTDGDARGGAALSVRHIIGKPIKFLGVGEKIDALELFHPERV 290

Query: 307 SAVITGCLD 315
            + + G  D
Sbjct: 291 VSRLLGMGD 299


>gi|330862600|emb|CBX72753.1| cell division protein ftsY [Yersinia enterocolitica W22703]
          Length = 439

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 111/265 (41%), Positives = 169/265 (63%), Gaps = 2/265 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
              +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV   +KI+  
Sbjct: 176 KEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGVETTRKIITS 235

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L      K +     LY  + E + ++L  + KP +    + P VIL+VGVNGVGKTT I
Sbjct: 236 LTEHASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVSGKN-PFVILMVGVNGVGKTTTI 294

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A++ ++A + 
Sbjct: 295 GKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSASVIFDAIQA 354

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+ +DVL+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q
Sbjct: 355 AKARGIDVLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQ 414

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGG 273
            ++F+   G TG+ +TK+DGTA+GG
Sbjct: 415 AKLFNEAVGLTGITLTKLDGTAKGG 439


>gi|167045714|gb|ABZ10361.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine bacterium HF4000_APKG2098]
          Length = 304

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 127/302 (42%), Positives = 188/302 (62%), Gaps = 1/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +    K   G + +S  L  G+ D+I  R++D  + +ELED LI+SD+GV  A+++ E+ 
Sbjct: 1   MGIFDKFKLGLSKSSKSLSSGLNDLIFKRKIDKNMLDELEDFLIQSDVGVESAKELREKF 60

Query: 71  LT-KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              K   K     ++    S    ++L PL K       ++P VIL+ GVNGVGKTT IG
Sbjct: 61  ANIKINPKSSEKDKIFKIFSNYAAEILKPLEKNLENLNENKPSVILIAGVNGVGKTTTIG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL K +     K++  A DTFR+AA++QL++WA R +AD + SE G+D A++AY+A + A
Sbjct: 121 KLGKILGQNNKKIVFGAADTFRAAAVNQLEVWAKRINADIIKSEEGADPASVAYKALEHA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D L+IDTAGRL NN  LM    K+ +V+K++D +APH    +LDATTGQ+A+ QV
Sbjct: 181 KNNNFDYLLIDTAGRLQNNKNLMDEFKKITKVVKKIDSNAPHETFLILDATTGQSAINQV 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F  +   TG+IMTK+DGTA+GG L+ I    K+P+  LG+GE  +DL+ F ++ FS  
Sbjct: 241 EEFKKITPITGIIMTKLDGTAKGGILLAIGKKFKLPIVALGMGEKEDDLQKFNSEYFSNA 300

Query: 310 IT 311
           + 
Sbjct: 301 LM 302


>gi|125980516|ref|XP_001354282.1| GA18336 [Drosophila pseudoobscura pseudoobscura]
 gi|195167799|ref|XP_002024720.1| GL22620 [Drosophila persimilis]
 gi|54642588|gb|EAL31335.1| GA18336 [Drosophila pseudoobscura pseudoobscura]
 gi|194108125|gb|EDW30168.1| GL22620 [Drosophila persimilis]
          Length = 508

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++     + +E+   L+ +D+ + + +++ E +      
Sbjct: 3   LADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      + ++I+ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELIKLVDPGVKPYQ-PIKGKANIIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A E     + 
Sbjct: 122 AYHYQKRNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +  +   +       P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEMIIVDTSGRHKQEESLFEEMLAVANAVN------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|114771306|ref|ZP_01448726.1| Signal recognition particle protein ffh [alpha proteobacterium
           HTCC2255]
 gi|114548231|gb|EAU51118.1| Signal recognition particle protein ffh [alpha proteobacterium
           HTCC2255]
          Length = 500

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 149/306 (48%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA+ S +L      + +   L D        E+   L+ +D+ + +A+  ++ +  K   
Sbjct: 2   FANLSDRLSGVFDKLNNKATLSDDDVSIALREVRVALLEADVSLPIARDFIKAIQAKASG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPF-NWDFSHRPHVILVVGVNGVGKTTVIGK 130
           + V+      Q+V+  V + +   L    K        + P  IL+VG+ G GKTT   K
Sbjct: 62  QAVTKSVKPGQQVVKIVHDELVHFLAGEDKNASELKIDNPPAPILMVGLQGSGKTTTTAK 121

Query: 131 LSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K++ +    KV++A+ DT R AA++QL I   +   D +    G  A  +A  A +QA
Sbjct: 122 LAKRLKEKNNKKVLIASLDTNRPAAMEQLAILGTQIGVDSLPIVKGESAVKIAKRAKQQA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV I+DTAGRL  +  LM+ +  +  + K      P   + V+D  TGQ+A+   
Sbjct: 182 MLGGYDVFILDTAGRLSIDEELMSEVEAVRNIAK------PRETMLVVDGLTGQDAVHTA 235

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F    G +G+I+T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  
Sbjct: 236 QNFDDRIGISGVILTRMDGDGRGGAALSMRAVTGRPIKFVGLGEKVDALEEFHPERVAGR 295

Query: 310 ITGCLD 315
           I G  D
Sbjct: 296 ILGMGD 301


>gi|119953471|ref|YP_945680.1| signal recognition particle, subunit FFH/SRP54 [Borrelia turicatae
           91E135]
 gi|119862242|gb|AAX18010.1| signal recognition particle, subunit FFH/SRP54 [Borrelia turicatae
           91E135]
          Length = 449

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 147/308 (47%), Gaps = 14/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L  GF      +      +I+ + + +   + +++ LI +D+ + V ++ +  ++ 
Sbjct: 1   MFENLGTGFRDFVKYISG--KSVINEKNI-EAAIDTIKNALIEADVNLRVVRRFINSVVE 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +     V        + +  V++ +   L            ++   IL++G+ G GKTT 
Sbjct: 58  EAKGIKVLRNIDPKSQFIKIVNDKLINFLGDKHSELVLSPVNKLSCILMLGLQGSGKTTT 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+ ++     KV+L A DTFR+AA++QLKI   +        E  SD   +  ++ +
Sbjct: 118 CAKLAMRLKSENRKVLLVAADTFRAAAVNQLKILGMQVGVSVFSLEGESDPIKVVKKSIE 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ +  D +IIDT GRL    +L+  I ++ +++      AP   + V DA TGQ+A+ 
Sbjct: 178 YAKTELFDTVIIDTRGRLEVEDLLLREIIEIKKIV------APTETILVADAMTGQSAVN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+   G TG+I TK D  ARGG ++ +      P+ F+GVGE   DL+ F     +
Sbjct: 232 IAKEFNDSVGITGVIFTKFDSDARGGAILSLKTICGAPIKFVGVGEKPEDLDVFYPDRVA 291

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 292 SRILGMGD 299


>gi|114571433|ref|YP_758113.1| signal recognition particle subunit FFH/SRP54 (srp54) [Maricaulis
           maris MCS10]
 gi|114341895|gb|ABI67175.1| signal recognition particle subunit FFH/SRP54 (srp54) [Maricaulis
           maris MCS10]
          Length = 521

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 92/310 (29%), Positives = 148/310 (47%), Gaps = 16/310 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT+       KL      ++S + +D  +RE +   L+ +D+ + V +   +++  
Sbjct: 1   MFDTLTERLGGVFDKLTG--RGVLSEKDVDAALRE-IRVALLEADVALDVVKAATKQIRE 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           +   +DV       Q+V+  V + +  +L    +P        P + IL+ G+ G GKTT
Sbjct: 58  RAVGEDVIRAVSPGQQVIKIVHDALVDLLGGEGEPVGLSLEGEPPIAILMAGLQGSGKTT 117

Query: 127 VIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
              KL+K++      KV+LA+ DT R AA++QL+  A +    F+       A  +A  A
Sbjct: 118 TSAKLAKRIQETQKKKVLLASLDTRRPAAMEQLQQLAGQIDVAFLPIVPNQRAVDIAKRA 177

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
               + +  DV+I+DTAGR   +  +MA    + RV        P   L V DA TGQ+A
Sbjct: 178 MNAGRLQGFDVVILDTAGRTSIDEEMMAEAHDIARVTN------PRETLLVADALTGQDA 231

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +     FH     TGL++T+MDG  RGG  + +     +P+ FLGV E  + L+ F AK 
Sbjct: 232 VETARRFHDRLPLTGLVLTRMDGDGRGGAALSMRHVTGLPIKFLGVSEKPDGLDAFDAKR 291

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 292 VAGRILGRGD 301


>gi|15828813|ref|NP_326173.1| signal recognition particle protein [Mycoplasma pulmonis UAB CTIP]
 gi|14089756|emb|CAC13515.1| SIGNAL RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)
           [Mycoplasma pulmonis]
          Length = 449

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 149/306 (48%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F     ++++ I  +     L++     V ++++  L+ +D+ + V +K ++++  K   
Sbjct: 2   FDFLGNRIQKSIQKMSKKTTLNEADILEVIKDIKFALLEADVNLLVVKKFIKDVKEKALE 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q ++  V + +  +L    K        +PHVI+ VG+ G GKTT + K+
Sbjct: 62  SELIGKLNPSQTMIKIVKDELTTLLGG--KAQEIKIVKKPHVIMFVGLQGGGKTTTVAKV 119

Query: 132 SKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +  +         +L A D +R AAIDQL+  A +       +++       A +A  QA
Sbjct: 120 AYYLRKKKFVENPLLVACDVYRPAAIDQLQTLAKQIQIPVYANDVSVSPIKTARQALDQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +K D++IIDTAGRL  +  LM  +  + + +K      P  ++ V DA +GQ+ +   
Sbjct: 180 YKEKNDLVIIDTAGRLSIDEKLMEELLLIKKEIK------PDEIIFVADAMSGQDIINVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH     +  I+TK+D  ARGG  + I     IP+ F+G GE I++++ F A   +  
Sbjct: 234 KTFHEKLSLSSSIITKLDSDARGGAALSIREILNIPIKFIGTGEKISNIDIFHADRMAER 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|42522713|ref|NP_968093.1| signal recognition particle-docking protein FtsY [Bdellovibrio
           bacteriovorus HD100]
 gi|39573909|emb|CAE79086.1| signal recognition particle-docking protein FtsY [Bdellovibrio
           bacteriovorus HD100]
          Length = 402

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 113/304 (37%), Positives = 171/304 (56%), Gaps = 10/304 (3%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L      T   L   I ++  S    +   EE+E++L  SD+G A  Q+++  +  K   
Sbjct: 99  LAVALKKTEENLFGRIRNLFKSET-SNKHLEEIEEILYTSDLGPATVQRLMGAIEDKLSK 157

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWD---------FSHRPHVILVVGVNGVGKTTV 127
           K+ +    + +  +   K +   S   +            +  P V+++VGVNG GKTT 
Sbjct: 158 KERADYDTVREALKEEIKNIFQGSHSTSVGTGILSKIQFAAEGPTVLMIVGVNGAGKTTS 217

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGK+S +++  G KV++AAGDTFR+AA  QLK+W DR   +    E  +D +A+A++A  
Sbjct: 218 IGKISAQLAAEGKKVLVAAGDTFRAAAGGQLKVWTDRAQVEIFSPEGVTDPSAVAFDAVA 277

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           + +A+  DV+I+DTAGRLH  + LM  I KM RV+ ++ P APH  L VLDA +GQNAL 
Sbjct: 278 KGKAQGYDVVIVDTAGRLHTQANLMEEIKKMKRVMSKVIPEAPHETLIVLDANSGQNALM 337

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + FH     TG ++TKMDGTA+GG  + +     IP+  +GVGE I DL  F +++F 
Sbjct: 338 QAKEFHNALTLTGAVLTKMDGTAKGGVAVGLAQELHIPIKLIGVGERIQDLRTFSSQEFV 397

Query: 308 AVIT 311
             + 
Sbjct: 398 NSLF 401


>gi|302811179|ref|XP_002987279.1| hypothetical protein SELMODRAFT_158663 [Selaginella moellendorffii]
 gi|302815043|ref|XP_002989204.1| hypothetical protein SELMODRAFT_272046 [Selaginella moellendorffii]
 gi|300143104|gb|EFJ09798.1| hypothetical protein SELMODRAFT_272046 [Selaginella moellendorffii]
 gi|300144914|gb|EFJ11594.1| hypothetical protein SELMODRAFT_158663 [Selaginella moellendorffii]
          Length = 491

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 144/305 (47%), Gaps = 14/305 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    ++   + ++ ++  +D+ V      E+   L ++D+ + + Q +   +      
Sbjct: 3   LAELGGRISRALQEMTNATVIDEKVLTACLNEISRALFQADVQLKMVQTMCTNIKKIVNL 62

Query: 77  KDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGKLS 132
           +D++        + + +   L  +  P    FS    +P VI+ VG+ G GKTT   K +
Sbjct: 63  EDLAAGHNKRRIIQQAVFNELCSMLDPGKPSFSPQKGKPSVIMFVGLQGSGKTTTCTKYA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G K  L   DTFR+ A DQLK  A + +  F  S   +D   +A E  +  +A+
Sbjct: 123 YHYQKKGFKPALICADTFRAGAFDQLKQNATKANIPFYGSYTETDPVKIAQEGLETFRAE 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D++I+DT+GR    + L   + ++          +P  V+ V+D + GQ A  Q + F
Sbjct: 183 KCDLIIVDTSGRHKQEAALFEEMRQV------AAATSPDLVIFVMDGSIGQAAFDQAQAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              A    +I+TKMDG A+GGG +  V   K PV F+G GE I++ E F  K F + + G
Sbjct: 237 KQSASVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFETFETKPFVSRLLG 296

Query: 313 CLDYG 317
             D+ 
Sbjct: 297 MGDWA 301


>gi|293189830|ref|ZP_06608544.1| signal recognition particle protein [Actinomyces odontolyticus
           F0309]
 gi|292821245|gb|EFF80190.1| signal recognition particle protein [Actinomyces odontolyticus
           F0309]
          Length = 527

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 146/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +    + S   L +   +    ++   LI +D+ + V ++   ++  K Y 
Sbjct: 2   FGNLSDRLSQSFRSLRSRGVLTESDVDHAISDIRRALIDADVALPVVRQFTTQVREKAYG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              S      Q+V+  V E + ++L   ++   +  S  P V ++ G+ G GKTT+ GKL
Sbjct: 62  AARSKALNPGQQVVSIVHEELVEILGGATRELTFAESG-PTVFMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            K + + G  V+L A D  R  A+ QL++  +R        E G+   D   +A    + 
Sbjct: 121 GKWLREEGKTVLLVASDLQRPNAVQQLQVVGERAGVKVWAPEPGNGVGDPVEVARSGVEF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+   ++V+I+DTAGRL  +  +M         +   D   PH ++ VLDA  GQ+A+  
Sbjct: 181 ARQSGINVVIVDTAGRLGVDQEMMEQ------AIAIRDAVNPHEIMFVLDAMVGQDAVST 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G TG++++K+DG ARGG  + +      P+ F   GEG++D E F A   + 
Sbjct: 235 STAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGAPILFASTGEGLDDFERFHADRMAG 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|322373361|ref|ZP_08047897.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           C150]
 gi|321278403|gb|EFX55472.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           C150]
          Length = 490

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 177/314 (56%), Gaps = 7/314 (2%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           ++  +V +E      K  +    T       + +  ++ RR+D+   EELE++LI SD+G
Sbjct: 177 VATSQVETEQ----EKYDRTLKKTRTGFAARLNEFFANFRRVDEEFFEELEEMLILSDVG 232

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           V VA ++ E+L  +   ++V     L    + +L+             +F     V+L V
Sbjct: 233 VNVATQLTEDLRYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYNEQINFQDGLTVMLFV 292

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 293 GVNGVGKTTSIGKLAHKYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVEVPVVTGAEKAD 352

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  L
Sbjct: 353 PASVVFDGMEKALAEDVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLAL 412

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TGLI+TK+DG+A+GG ++ I     IPV  +G GE I+D
Sbjct: 413 DASTGQNALSQAKEFSKITPLTGLILTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKIDD 472

Query: 298 LEPFVAKDFSAVIT 311
           +  F +++F   + 
Sbjct: 473 IGEFHSEEFMQGLL 486


>gi|317495480|ref|ZP_07953848.1| signal recognition particle-docking protein FtsY [Gemella
           moribillum M424]
 gi|316914294|gb|EFV35772.1| signal recognition particle-docking protein FtsY [Gemella
           moribillum M424]
          Length = 348

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 122/297 (41%), Positives = 178/297 (59%), Gaps = 4/297 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   +       + ++ISS R +++   E+LE+LLI+SD+      ++V+ L  +
Sbjct: 39  EKFKKGLKKSRDSFSNALNNLISSYREINEEFFEDLEELLIQSDVSYNTVLELVDYLKEE 98

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKP-FNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              +++     L    + +L+   +    K    +       V L VGVNGVGKTT IGK
Sbjct: 99  SQRRNLKEPSELQEMIIEKLVDIYMEGTVKADLKYAPEKELSVFLFVGVNGVGKTTSIGK 158

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G KV++AAGDTFR+ AIDQL +WA R+ AD V S  G+D+AA+ ++A + A+
Sbjct: 159 LAHNLKKEGKKVLIAAGDTFRAGAIDQLDVWAKRSGADIVKSHEGADSAAIIFDAIQSAK 218

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DVL+ DTAGRL N   LM  + K++RV+KR  P  PH VL  +DATTGQN + Q +
Sbjct: 219 AKGYDVLLCDTAGRLQNKDYLMKELEKIVRVIKREVPEGPHEVLLTIDATTGQNGILQAK 278

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            F  V+  TG+I+TK+DGTA+GG +I I     IPV  +G+GE I+DLE F  + + 
Sbjct: 279 TFKEVSDVTGVILTKLDGTAKGGIVIAIKKELGIPVKLVGLGENIDDLEVFDPEQYI 335


>gi|170579858|ref|XP_001895013.1| signal recognition particle 54 kDa protein (SRP54) [Brugia malayi]
 gi|158598201|gb|EDP36148.1| signal recognition particle 54 kDa protein (SRP54), putative
           [Brugia malayi]
          Length = 501

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K++  I+ +  +  +++     + +E+   L+ +D+ V + +++ + +      
Sbjct: 3   LADLGRKIRNAISKLGQATIINEDELNAMLKEVCAALLEADVNVRLVKQLKDNVKKTLDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  V+ +R++   V   + K++ P  KPF      +P++ + VG+ G GKTT   KL
Sbjct: 63  DEMAGGVNKRRLIQRCVFTELMKLVDPGVKPFQ-PTKGKPNIFMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A     + + 
Sbjct: 122 AYYYQKKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVTIAANGVDKFKD 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DT+GR    + L      M++V   ++P    +++ V+DA+ GQ    Q   
Sbjct: 182 DGFEIIIVDTSGRHKQEASLFEE---MLQVSNAVNPS---NIVFVMDASIGQACEAQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+D  A+GGG +  V     PV F+G GE I+D EPF  K F   + 
Sbjct: 236 FSETVDVGSVIITKLDSHAKGGGALSAVAATHSPVIFIGTGEHIDDFEPFEVKPFVQKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|94988095|ref|YP_596196.1| cell division protein [Streptococcus pyogenes MGAS9429]
 gi|94991982|ref|YP_600081.1| cell division protein ftsY [Streptococcus pyogenes MGAS2096]
 gi|94541603|gb|ABF31652.1| cell division protein [Streptococcus pyogenes MGAS9429]
 gi|94545490|gb|ABF35537.1| Cell division protein ftsY [Streptococcus pyogenes MGAS2096]
          Length = 516

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 170/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRTGFSARLNSFFANFRRVDEEFFEDLEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    V +L+             ++     V+L VGVNGVGKTT IGKL
Sbjct: 273 AKLENAKKPDALKRVIVEKLVDIYEKDGRYNEAINYQDGLTVMLFVGVNGVGKTTSIGKL 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 333 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGMEKAVA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K+VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 393 KEVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLPDAPHETLLALDASTGQNALSQAKE 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   + 
Sbjct: 453 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKVDDIGEFHSEDFMKGLL 512


>gi|13542673|gb|AAH05543.1| Srp54c protein [Mus musculus]
          Length = 500

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQ------PDNIVYVMDASIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I++ EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDNFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|195491937|ref|XP_002093779.1| GE21487 [Drosophila yakuba]
 gi|194179880|gb|EDW93491.1| GE21487 [Drosophila yakuba]
          Length = 508

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++     + +E+   L+ +D+ + + +++ E +      
Sbjct: 3   LADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      + +V++ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQ-PIKGKANVVMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A E     + 
Sbjct: 122 AYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +  +   +       P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVS------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|94989975|ref|YP_598075.1| cell division protein ftsY [Streptococcus pyogenes MGAS10270]
 gi|94543483|gb|ABF33531.1| Cell division protein ftsY [Streptococcus pyogenes MGAS10270]
          Length = 516

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 116/300 (38%), Positives = 169/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRTGFSARLNSFFANFRRVDEEFFEDLEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    V +L+             ++     V+L VGVNGVGKTT IGK+
Sbjct: 273 AKLENAKKPDALKRVIVEKLVDIYEKDGHYNEAINYQDGLTVMLFVGVNGVGKTTSIGKM 332

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     +     +D A++ ++  ++A A
Sbjct: 333 AYRYKQEGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVITGPEKADPASVVFDGMEKAVA 392

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 393 KGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVLPDAPHETLLALDASTGQNALSQAKE 452

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   + 
Sbjct: 453 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKVDDIGEFHSEDFMKGLL 512


>gi|56551971|ref|YP_162810.1| signal recognition particle protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761945|ref|ZP_04760030.1| signal recognition particle protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752484|ref|YP_003225377.1| signal recognition particle protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56543545|gb|AAV89699.1| signal recognition particle protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373625|gb|EER63197.1| signal recognition particle protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258551847|gb|ACV74793.1| signal recognition particle protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 474

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +D VR+ + +    L+ +D+ + V +  V ++  K   
Sbjct: 2   FGSLSERLSGVFDRLRGRGALTEDDVRQAMREVRIALLEADVALPVVRDFVSKITEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V + + +ML   +   N    + P VIL+VG+ G GKTT   KL
Sbjct: 62  HNVLKSVTPGQQVVKIVYDALVEMLGSDTSDLNLAV-NPPAVILMVGLQGSGKTTTSAKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            KK+ +   K + +A+ D  R AA +QL     +     +    G     +A  A   A+
Sbjct: 121 GKKLKEKDHKKVLMASLDVHRPAAQEQLATLGQQADVPTLPIIAGQQPVEIAQRALTSAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+I+DTAGRLH + +LM  +  +       D   P   L V+DA  GQ+A+    
Sbjct: 181 LQGYDVVILDTAGRLHIDQLLMDEMKAV------ADSSQPAETLLVVDALAGQDAVNIAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+T+MDG ARGG  + +      P+ F+G  E ++ L PF     +  I
Sbjct: 235 SFSEQVDLTGVILTRMDGDARGGAALSMRAVTGKPIKFVGTSEKLDGLSPFHPDRVANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|118431321|ref|NP_147702.2| signal recognition particle protein [Aeropyrum pernix K1]
 gi|116062644|dbj|BAA80066.2| probable signal recognition particle protein [Aeropyrum pernix K1]
          Length = 308

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/314 (29%), Positives = 164/314 (52%), Gaps = 20/314 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVE 68
              +L +     S  +  GI D ++ + L     + V +++   L+ SD+ +  A+ IV 
Sbjct: 1   MFGRLREALNRASEHIARGIVDTLAYKELKPEDLEPVLDDILIDLVESDVALEAAESIVA 60

Query: 69  ELLTK----RYAKDVSVQRVLYD-VSELIHKMLMPLSKP-----FNWDFSHRPHVILVVG 118
            +       R  +   V++V+ D + + +  +L P  +P            RP VIL +G
Sbjct: 61  GVKEGLTGYRVRRGEPVEKVVRDALRKALLTLLDPGPRPDLAAEARRRCGGRPLVILFLG 120

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT I K++  +  AG+  ++AA DTFR+ A +QL + A++     V    G D 
Sbjct: 121 VNGTGKTTTIAKVAYMLRKAGVTPVIAAADTFRAGAQEQLAVHAEKLGVPIVRGRYGGDP 180

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++AY+A K A+++    +++DTAGR+H +S L+  + K++RV+K      P   + V+D
Sbjct: 181 ASVAYDAVKHAESRGFCAVLVDTAGRMHVDSNLVEELRKIVRVVK------PDYKILVVD 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           + TG +A+ Q  +F    G  G+I+TK+D   +GG L+ +    + P+ ++G G+   DL
Sbjct: 235 SLTGNDAVEQARLFDEAVGVDGVIVTKVDADPKGGTLVSVAHAIRKPILYIGTGQRYEDL 294

Query: 299 EPFVAKDFSAVITG 312
            PF  +     + G
Sbjct: 295 RPFDPQKIVDQLLG 308


>gi|157803379|ref|YP_001491928.1| coproporphyrinogen III oxidase [Rickettsia canadensis str. McKiel]
 gi|157784642|gb|ABV73143.1| coproporphyrinogen III oxidase [Rickettsia canadensis str. McKiel]
          Length = 449

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 152/309 (49%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       +L    + I++  ++D  +R+ +   L+ SD+ + V +  + E+  
Sbjct: 1   MFKTLTQNLTKAFDQLVG--SGILTEAQIDATMRD-IRVALLESDVALPVIKDFIAEVKQ 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           K   ++V       Q ++  + E +  +L         + + +P V  L+VG+ G GKTT
Sbjct: 58  KALGQEVIKSVSPGQMIIKIIHEEMINLLAASESETKLNLNSKPPVNFLMVGLQGSGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL+ ++ +   KV+L + DT+R AA +QL I A+    + +    G     +   A 
Sbjct: 118 ASGKLALRLKNHNKKVLLVSLDTYRPAAQEQLAILANLVQINSLPIVQGEKPLDIVKRAI 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    DV+I DTAGR   +  +M     + ++++      P   L V+D+ TGQ+A+
Sbjct: 178 AEAKLSAYDVVIYDTAGRTQIDKEMMEEALSIKKIVE------PTETLLVIDSMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     +GLI++++DG ++GG  + +    K P+ FL  GE + DLE F AK  
Sbjct: 232 VTASSFNEKLEISGLILSRIDGDSKGGAALSVKYITKKPIKFLSNGEKLTDLEEFDAKRL 291

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 292 ASRILDMGD 300


>gi|110004366|emb|CAK98704.1| probable gtp-binding signal recognition particle srp54-homolog
           protein [Spiroplasma citri]
          Length = 452

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 154/302 (50%), Gaps = 19/302 (6%)

Query: 24  TSLKLKEGITDIISSRRLD-DGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDV 79
            + +LK+ I   +    L  D + E + ++   L+ +D+   V +  ++ + TK   + +
Sbjct: 6   LANRLKKSIEKNMKKSTLTTDAITETMREIRLSLLEADVNNEVVKDFIKAVETKARGEYI 65

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                S Q ++  V E +  +    +K     F+ +P +I++VG+ G GKTT  GK++K 
Sbjct: 66  LDGLNSTQMMVKIVHEELVNIFGKTAKEL--SFASKPTIIMMVGLQGSGKTTTTGKIAKL 123

Query: 135 MSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +      K +L A D +R AAI+QLK      + +     +  +    A +A   A+  K
Sbjct: 124 VEKKYHKKPLLVACDIYRPAAIEQLKTIGKNLNIEVFERGM-QNPITTAQQAITYAKDNK 182

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DV++IDTAGRLH ++ LM  + ++   +       P  +L V+D  TGQ+ +     F+
Sbjct: 183 NDVILIDTAGRLHIDAELMQELKEIKNNIT------PDEILLVVDGMTGQDIINVATEFN 236

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            +   TG+++TK+DG ARGG  + I    K+P+ F+G GEG+++L+ F     +  I G 
Sbjct: 237 QLLKLTGVVVTKLDGDARGGAALSITHLTKLPITFIGTGEGMSNLQIFYPDRMADRILGM 296

Query: 314 LD 315
            D
Sbjct: 297 GD 298


>gi|193580274|ref|XP_001951515.1| PREDICTED: signal recognition particle 54 kDa protein-like isoform
           1 [Acyrthosiphon pisum]
 gi|328716940|ref|XP_003246080.1| PREDICTED: signal recognition particle 54 kDa protein-like isoform
           2 [Acyrthosiphon pisum]
          Length = 504

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +++   L+ +++ V + +K+ E +      
Sbjct: 3   LADLGRKITSALRGLNNASVINEEVLNSMLKDICAALLEANVNVMLVKKLRENVRNVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  K +      RP++I+ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELVKLVDPGVKSYQ-PVKGRPNIIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQLK  A +    F  S    D   +A +     + 
Sbjct: 122 AYYYLKKNWKTCLVCADTFRAGAYDQLKQNATKAQIPFYGSYTEVDPVVIAQDGVDMFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++++DT+GR    + L   + ++   +K      P +++ V+DAT GQ    Q   
Sbjct: 182 EGFEIIVVDTSGRHKQEASLFEEMLQVSNTIK------PDNIVFVMDATIGQACEGQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +++TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  K F + + 
Sbjct: 236 FKDKVNIGSVVITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|254167206|ref|ZP_04874059.1| signal recognition particle-docking protein FtsY [Aciduliprofundum
           boonei T469]
 gi|197624062|gb|EDY36624.1| signal recognition particle-docking protein FtsY [Aciduliprofundum
           boonei T469]
          Length = 307

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 109/314 (34%), Positives = 165/314 (52%), Gaps = 16/314 (5%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K   E L +I+K  +       +   G+   I+  +L+D + + +E  L+ +D+ V V +
Sbjct: 3   KALKEKLGFIKKKAESMD---QEFTTGVGKKITEDKLEDFLWD-IEVALMEADVAVDVIE 58

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFNWDF----SHRPHVILVVG 118
           KI  +L      K V ++  +  + E  L   +   LSK F++D     + RP VI+ +G
Sbjct: 59  KIKNDLKKALVGKKVKLRADMGKIVEDTLKKSIKDILSKDFDFDEFIRNAPRPTVIMFLG 118

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTTVI KL+K + D G  V++AAGDTFR+ AI+Q+ I  D      +  + G D 
Sbjct: 119 VNGTGKTTVIAKLAKYLKDKGYSVVMAAGDTFRAGAIEQISIHGDNLGIKVIKHQAGGDP 178

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+AK  D ++IDTAGR+  N  LM  + K+ RV K      PH  + V D
Sbjct: 179 AAVCYDAIEHAKAKHRDFVLIDTAGRMQTNRNLMEEMKKIKRVAK------PHLTIFVGD 232

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  G +A+ Q + F    G   +I+ K+D  A+GG  + I      P+ FLG G+  +DL
Sbjct: 233 ALAGNDAIEQAKKFEEAVGIDAVILNKVDADAKGGAALSIAYELNKPIIFLGNGQKYDDL 292

Query: 299 EPFVAKDFSAVITG 312
             F    F   I G
Sbjct: 293 MKFDVNWFLHRIFG 306


>gi|23007753|ref|ZP_00049485.1| COG0541: Signal recognition particle GTPase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 358

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 144/300 (48%), Gaps = 17/300 (5%)

Query: 25  SLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV- 79
           S  L   ++ +     L +        E+   L+ +D+ + V +   +++  K     V 
Sbjct: 1   SRLLSGILSGLTRRGALTEADVTAAMREVRRALLEADVALEVVRSFTDKVREKAVGATVL 60

Query: 80  ----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 Q V+  V++ +  ML   +   + + +  P  IL+VG+ G GKTT   K+++++
Sbjct: 61  KSVTPGQMVVKIVNDELIAMLGTDASVVDLN-APAPVAILMVGLQGSGKTTTTAKIARRL 119

Query: 136 SDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           S    + +L A+ DT R AA++QL + A +   + +    G  A  +A  A + A+    
Sbjct: 120 SSRDKRRVLLASLDTRRPAAMEQLAVLAKQVEVESLPIVAGQSAVQIAKRAMEAARLGGF 179

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+++DTAGR   +  LM    ++    K      PH VL V DA TGQ+A+     F  
Sbjct: 180 DVVMLDTAGRTTVDEGLMNEAAEVKAATK------PHEVLLVADALTGQDAVNTARAFDQ 233

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
             G TG+++T+MDG +RGG  + +      P+  +GVGE ++ LE F  +  +  I G  
Sbjct: 234 RLGVTGIVLTRMDGDSRGGAALSMRAVTGKPIKLVGVGEKVDALEEFHPQRVANRILGHG 293


>gi|212550936|ref|YP_002309253.1| signal recognition particle protein [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549174|dbj|BAG83842.1| signal recognition particle protein [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 439

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + KL+  +  +    ++ +       +++   L+ +D+   +A+     +  K   
Sbjct: 2   FENLTDKLERSLKLLKGEGKITEINVAETLKDIRKSLLDADVNYKIAKSFTNTVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       + ++  V + +  ++   +   N   S++  +IL+ G+ G GKTT   KL
Sbjct: 62  QNVLGSIKPGELMVKIVHDELSNLMGSNASELNL--SNKLSIILISGLQGSGKTTFCSKL 119

Query: 132 SKKMSDAGLKVMLAAGD-TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + D   K  L   D  +R AAIDQLKI   +             +  +A  A KQA+
Sbjct: 120 AKMLKDKKNKNPLLVADDIYRPAAIDQLKILGKQIDVTVYSELNNKSSIQIAQSAIKQAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K DV+IIDTAGRL  +  +M  I  + + +       P  +L V+D+ TGQ+A+   +
Sbjct: 180 QDKNDVVIIDTAGRLAVDQRMMEEIASIKKAIN------PDEILFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+++TK+DG  RGG  + I      P+ F+  GE +  ++ F  K  +  I
Sbjct: 234 EFNNRLDFSGIVLTKLDGDTRGGAALSIRAVVNKPIKFVSRGEKMESIDIFHPKRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|320587877|gb|EFX00352.1| signal recognition particle protein srp54 [Grosmannia clavigera
           kw1407]
          Length = 530

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   ++D+  +  +D    D + +E+ + L+ +D+ V +  ++ + +      
Sbjct: 3   LQDLGRRINAAVSDLTRAPNIDEKAFDSMLKEIGNALVEADVNVKLVAQLRKSIKGTVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           KD+        + +      + +++ P S+PF      + +VI+ VG+ G GKTT   KL
Sbjct: 63  KDLPPAVNKKRLIQKAVFDELVQLVDPHSEPFKPK-KGKTNVIMFVGLQGAGKTTSCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G +  L   DTFR+ A DQLK  A +    +  S   +D A +A +  ++ + 
Sbjct: 122 ARHYQSRGFQACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVARDGVEKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ D++I+DT+GR    S L   +  +   +K      P   + VLDAT GQ A  Q + 
Sbjct: 182 ERFDIIIVDTSGRHRQESALFQEMIDIQEAVK------PDETIMVLDATIGQQAEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK DG A+GGG I  V   + P+ FLG GE + DLE F  + F   + 
Sbjct: 236 FKEAADFGAIIITKTDGHAKGGGAISAVAATRTPIVFLGTGEHMLDLERFAPQQFIQKLL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDM 300


>gi|126179907|ref|YP_001047872.1| signal recognition particle protein Srp54 [Methanoculleus
           marisnigri JR1]
 gi|125862701|gb|ABN57890.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanoculleus marisnigri JR1]
          Length = 443

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 139/301 (46%), Gaps = 13/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    LK+ +  +     +D    + +  +L+  L+ +D+ V +   + + +  +   
Sbjct: 2   LDNLGTSLKDAVKKLAGKTVIDRAAVEELVRDLQRALLSADVNVKLVMHLSQTIKQRALD 61

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++      + + V  ++++ L+ +      + +  P  IL+ G+ G GKTT   KL++  
Sbjct: 62  EEPPKGMGVREHVLRIVYQELVRMMGSPG-EVALEPQTILMAGLQGSGKTTTTAKLARYF 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              GL+V +   DTFR  A DQLK   DR S          DA  +  E   + +    +
Sbjct: 121 QRKGLRVGVICADTFRPGAYDQLKTLCDRISVPCFGDPKEPDALKIVREGLPKYRKL-YE 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+IIDT GR      L+  I  +  +      HA H    V+DA  GQ A  Q   FH  
Sbjct: 180 VIIIDTQGRHALEENLIEEIVNINEI-----SHAEHR-WLVIDAALGQQASEQARRFHEA 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+++TKMDGTA+GGG +  V   +  + F+G GE I+DLE F    F + + G  D
Sbjct: 234 IGIDGVLVTKMDGTAKGGGALSAVAETQSGIVFIGSGETIDDLERFDPDGFISRLLGMGD 293

Query: 316 Y 316
            
Sbjct: 294 L 294


>gi|195127379|ref|XP_002008146.1| GI13333 [Drosophila mojavensis]
 gi|193919755|gb|EDW18622.1| GI13333 [Drosophila mojavensis]
          Length = 508

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++     + +E+   L+ +D+ +   +++ E +      
Sbjct: 3   LADLGRKITTALHSLSKATVINEEALSAMLKEICAALLEADVNIRQVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      + +VI+ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELIKLVDPGVKPYQ-PVKGKANVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A E     + 
Sbjct: 122 AYHYQKRNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +  +   +       P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEMIIVDTSGRHKQEESLFEEMLAVANAVN------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKEKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|157964240|ref|YP_001499064.1| Signal recognition particle protein [Rickettsia massiliae MTU5]
 gi|157844016|gb|ABV84517.1| Signal recognition particle protein [Rickettsia massiliae MTU5]
          Length = 452

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 153/309 (49%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       KL    + I++  ++D  +R+ +   L+ SD+ + V +  + E+  
Sbjct: 4   MFKTLTQNLTKIFDKLVS--SGILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQ 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           K   ++V       Q ++  + E +  +L         + + +P V  L+VG+ G GKTT
Sbjct: 61  KALGQEVIKSVSPGQMIIKILHEEMINLLASSESETKLNLNSKPPVNFLMVGLQGSGKTT 120

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+ ++ +   KV+L + DT+R AA +QL I A+    + +    G +   +   A 
Sbjct: 121 ASSKLALRLRNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEEPLDIVKRAI 180

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    DV+I DTAGR H +  +M     + ++++      P   L V+D+ TGQ+A+
Sbjct: 181 AEAKISAYDVVIYDTAGRTHIDKAMMEEALAIKKIVE------PTETLLVIDSMTGQDAV 234

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     +GLI++++DG ++GG  + +    K P+ FL  GE + DLE F AK  
Sbjct: 235 VTASSFNEKLEISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGENLTDLEEFDAKRL 294

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 295 ASRILDMGD 303


>gi|254167609|ref|ZP_04874460.1| signal recognition particle-docking protein FtsY [Aciduliprofundum
           boonei T469]
 gi|289596933|ref|YP_003483629.1| signal recognition particle-docking protein FtsY [Aciduliprofundum
           boonei T469]
 gi|197623418|gb|EDY35982.1| signal recognition particle-docking protein FtsY [Aciduliprofundum
           boonei T469]
 gi|289534720|gb|ADD09067.1| signal recognition particle-docking protein FtsY [Aciduliprofundum
           boonei T469]
          Length = 307

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 165/314 (52%), Gaps = 16/314 (5%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K   E L +I+K  +       +   G+   I+  +L+D + + +E  L+ +D+ V V +
Sbjct: 3   KALKEKLGFIKKKAESMD---QEFTTGVGKKITEDKLEDFLWD-IEVALMEADVAVDVIE 58

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFNWDF----SHRPHVILVVG 118
           KI  +L      K V ++  +  + E  L   +   L+K F++D     + RP VI+ +G
Sbjct: 59  KIKNDLKKALVGKKVKLRADVGKIVEDTLKKSIKEILTKDFDFDEFIRNAPRPTVIMFLG 118

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTTVI KL+K + D G  V++AAGDTFR+ AI+Q+ I  D      +  + G D 
Sbjct: 119 VNGTGKTTVIAKLAKYLKDKGYSVVMAAGDTFRAGAIEQISIHGDNLGIKVIKHQAGGDP 178

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ Y+A + A+AK  D ++IDTAGR+  N  LM  + K+ RV K      PH  + V D
Sbjct: 179 AAVCYDAIEHAKAKHRDFVLIDTAGRMQTNRNLMEEMKKIKRVAK------PHLTIFVGD 232

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  G +A+ Q + F    G   +I+ K+D  A+GG  + I      P+ FLG G+  +DL
Sbjct: 233 ALAGNDAIEQAKKFEEAVGIDAVILNKVDADAKGGAALSIAYELNKPIIFLGNGQKYDDL 292

Query: 299 EPFVAKDFSAVITG 312
             F    F   I G
Sbjct: 293 MIFDVNWFLHRIFG 306


>gi|84490317|ref|YP_448549.1| signal recognition particle protein Srp54 [Methanosphaera
           stadtmanae DSM 3091]
 gi|121731822|sp|Q2NE47|SRP54_METST RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|84373636|gb|ABC57906.1| signal recognition particle, 54 kDa protein [Methanosphaera
           stadtmanae DSM 3091]
          Length = 444

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 146/306 (47%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAV----AQKIVEELLT 72
               S  L + +  +     +D      V ++++  LI+SD+ V V     +KI +  L 
Sbjct: 2   LEGLSESLTQTMKKLAGMSIIDKKTLKDVTKDIQRALIQSDVNVKVVFGLTKKIEKRALE 61

Query: 73  KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K +S +  +   V + +  ++    KP     + +P+ I+++G+ G GKTT   KL
Sbjct: 62  EELPKGLSPKEHVMRIVYQELVNLIGE--KPEELKINRKPYKIMMLGLQGSGKTTTTAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            K +   G    +   DT+R AA +QL+   +             DA  LA +  ++  +
Sbjct: 120 VKHLKKKGHTSAIVCTDTWRPAAYEQLRQLTEPLDVPVFGDPENKDAIDLAKKGLEKCGS 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            K DV+++DTAGR      L+  + ++ ++++      P  V+ V+D T GQ A  Q E 
Sbjct: 180 -KYDVILVDTAGRHKEEKDLLDEMAELSQIVQ------PDEVILVIDGTIGQQARSQAET 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I++K+DG+A+GGG +  V   + P+ F+G GE ++D E F  + F + + 
Sbjct: 233 FKKTTDIGSIIVSKLDGSAKGGGALSAVAEIRAPIKFIGTGERVDDFEAFDPERFISRLL 292

Query: 312 GCLDYG 317
           G  D  
Sbjct: 293 GMGDLD 298


>gi|296420065|ref|XP_002839601.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635784|emb|CAZ83792.1| unnamed protein product [Tuber melanosporum]
          Length = 546

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    ++   ++D+  S  +D    DG+ +E+   LI +D+ V +   + + +      
Sbjct: 3   LADLGKRITSAVSDLARSNVVDEKVFDGMLKEICSALIEADVNVKLVSNLRKSIKHTVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K+++       + +      + K++ P S+PF      R +VI+ VG+ G GKTT   KL
Sbjct: 63  KELNPNVNKKRLIQKAVFDELVKLVDPHSEPFKPK-KGRSNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D   ++ E  ++ + 
Sbjct: 122 ARHYQARGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSYTETDPVKVSREGVEKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ D++I+DT+GR      L A + ++ + +       P   + VLDA+ GQ A  Q + 
Sbjct: 182 ERFDIIIVDTSGRHQQEKELFAEMVQIQQAVT------PDQTIMVLDASIGQAAEAQSKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK DG A GGG I  V   + P+ F+G GE + DLE F  + F + + 
Sbjct: 236 FKESANFGAIIITKTDGHAAGGGAISAVAATRTPIMFIGTGEHMLDLERFAPQAFVSKLL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDM 300


>gi|288926975|ref|ZP_06420871.1| signal recognition particle-docking protein FtsY [Prevotella buccae
           D17]
 gi|315608918|ref|ZP_07883890.1| cell division protein FtsY [Prevotella buccae ATCC 33574]
 gi|288336258|gb|EFC74643.1| signal recognition particle-docking protein FtsY [Prevotella buccae
           D17]
 gi|315249298|gb|EFU29315.1| cell division protein FtsY [Prevotella buccae ATCC 33574]
          Length = 318

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 120/301 (39%), Positives = 182/301 (60%), Gaps = 6/301 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK-R 74
           L KG   T   +   +   ++ + ++DD V ++LE++L+ SD+GV    K++  +  +  
Sbjct: 15  LDKGLEKTKESVFGKLARAVAGKSKVDDDVLDDLEEVLVTSDVGVDTTLKVISRIEERVA 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFN----WDFSHRPHVILVVGVNGVGKTTVIGK 130
             K VS   +   + + I  +L   +   N        HRP+VILVVGVNGVGKTT IGK
Sbjct: 75  RDKYVSTGELNGILRDEIAALLSENNSDDNGNWDLPADHRPYVILVVGVNGVGKTTTIGK 134

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +   AG KV L A DTFR+AA++Q+ IW +R     V  ++G+D A++A++  + A+
Sbjct: 135 LAYQFKKAGKKVFLGAADTFRAAAVEQISIWGERVGVTVVKQQMGADPASVAFDTLQSAK 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   DV++IDTAGRLHN   LM  + K+  V+K++ P AP  V+ VLD +TGQNA  Q +
Sbjct: 195 ANGADVVLIDTAGRLHNKVGLMNELKKIKEVMKKVLPEAPDEVMLVLDGSTGQNAFEQAK 254

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F AV   T L +TK+DGTA+GG +I I    K+PV ++G+GEG+ DL+ F  ++F   +
Sbjct: 255 QFSAVTNITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFDKREFVDSL 314

Query: 311 T 311
            
Sbjct: 315 F 315


>gi|256851298|ref|ZP_05556687.1| signal recognition particle-docking protein FtsY [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660722|ref|ZP_05861637.1| signal recognition particle-docking protein FtsY [Lactobacillus
           jensenii 115-3-CHN]
 gi|282933257|ref|ZP_06338644.1| FtsY-like protein [Lactobacillus jensenii 208-1]
 gi|297206167|ref|ZP_06923562.1| cell division protein FtsY [Lactobacillus jensenii JV-V16]
 gi|256616360|gb|EEU21548.1| signal recognition particle-docking protein FtsY [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548444|gb|EEX24419.1| signal recognition particle-docking protein FtsY [Lactobacillus
           jensenii 115-3-CHN]
 gi|281302761|gb|EFA94976.1| FtsY-like protein [Lactobacillus jensenii 208-1]
 gi|297149293|gb|EFH29591.1| cell division protein FtsY [Lactobacillus jensenii JV-V16]
          Length = 434

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 105/294 (35%), Positives = 161/294 (54%), Gaps = 5/294 (1%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
            G   T+      +    +  R +D+   +ELEDLLI SD+G   ++++VE+L  +   +
Sbjct: 133 SGLKKTNQGFGARLNAFFAQFRSVDEDFFDELEDLLIESDVGFETSEELVEQLKDEAKLQ 192

Query: 78  DVSVQRVLY--DVSELIHKMLMPLSKPFN--WDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           +      L    V +L+                   + +V L VGVNG GKTT IGKL++
Sbjct: 193 NAKSHDELKKLIVQKLVDIYDQNGDSEAEKLTYNDGKTNVYLFVGVNGAGKTTTIGKLAQ 252

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +  + G KV+L A DTFR+ A++QLK W  RT  + V   + +D A++ Y+  K    +K
Sbjct: 253 RFKNQGKKVVLVAADTFRAGAVEQLKEWGRRTETEVVTGPVQADPASVVYDGVKHGLEEK 312

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D +++DTAGRL N   LM  + K+ R +K+L P  P   L VLD +TGQNAL Q + F 
Sbjct: 313 ADYVLVDTAGRLQNKQNLMKELEKIERTIKKLLPEEPSETLLVLDGSTGQNALLQAKDFD 372

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                TGL++TK+DG+++GG ++ I    K+PV  +G+GE   DL  F A  ++
Sbjct: 373 KTTKLTGLVLTKLDGSSKGGVILAIRNEMKLPVKLVGLGEKAEDLADFDAASYA 426


>gi|242009196|ref|XP_002425377.1| Signal recognition particle 54 kDa protein, putative [Pediculus
           humanus corporis]
 gi|212509171|gb|EEB12639.1| Signal recognition particle 54 kDa protein, putative [Pediculus
           humanus corporis]
          Length = 501

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 141/300 (47%), Gaps = 13/300 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT----KRYA 76
            A    K+   +  + S   + + + +++   L+ +D+ + + +K+ E +         A
Sbjct: 3   LADLGRKITSALHSL-SKATVLNSMLKDICTALLEADVNIRLVKKLRENVRAVIDFDEMA 61

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             ++ +R++   V + + K++ P  K        +P++I+ VG+ G GKTT   KL+   
Sbjct: 62  GGLNKRRMIQSAVFKELVKLVDPGVKSHQ-PVKGKPNIIMFVGLQGSGKTTTCTKLAYHY 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                K  L   DTFR+ A DQLK  A +    F  S    D   +A +  +  + +  +
Sbjct: 121 LKKNWKACLVCADTFRAGAYDQLKQNATKARIPFYGSYTEVDPVVIAQDGVEMFKKEGFE 180

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++I+DT+GR      L   + ++   +K      P +++ V+DAT GQ    Q   F   
Sbjct: 181 IIIVDTSGRHKQEESLFEEMLQVSNAIK------PDNIIFVMDATIGQACESQARAFKEK 234

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +I+TK+DG A+GGG +  V     P+ F+G GE I+D E F  K F + + G  D
Sbjct: 235 VNVGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDFESFKTKPFISKLLGMGD 294


>gi|170017641|ref|YP_001728560.1| Signal recognition particle-docking protein FtsY [Leuconostoc
           citreum KM20]
 gi|169804498|gb|ACA83116.1| Signal recognition particle-docking protein FtsY [Leuconostoc
           citreum KM20]
          Length = 400

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 117/301 (38%), Positives = 173/301 (57%), Gaps = 11/301 (3%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   T           +++ R +D+   EELE+ L+ +D+G  +A KI +EL  +    
Sbjct: 98  KGLEKTRTGFAARFNKFLANFRSVDEDFFEELEETLVGADVGFDMAIKISDELREEVK-- 155

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDF-------SHRPHVILVVGVNGVGKTTVIGK 130
            +   +   DV ++I K ++ L +    D        ++   VIL VGVNGVGKTT IGK
Sbjct: 156 -LENAKRKEDVRDVIIKKMVDLYEADGVDEDATMHFNANGTTVILFVGVNGVGKTTTIGK 214

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ K    G  V+LAA DTFR+ A  QL+ W +R     V  +  +D A++ +EA  +A+
Sbjct: 215 LATKYRQQGKSVLLAAADTFRAGATKQLQEWGERAGVPVVAGKEKADPASVVFEAVAKAR 274

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D+L +DTAGRL NN  LM  + KM R+++R  P APH VL VLDATTGQNAL+Q +
Sbjct: 275 DEHYDILFVDTAGRLQNNVNLMQELEKMKRIIQREIPDAPHEVLLVLDATTGQNALQQAK 334

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F   +  TG+++TKMDGTA+GG +  I     +PV ++G GE  +DL  F  ++F   +
Sbjct: 335 LFKDSSDVTGIVLTKMDGTAKGGIVFAIRSEMHLPVKWIGFGEKASDLRVFKPEEFIYSL 394

Query: 311 T 311
            
Sbjct: 395 F 395


>gi|325479547|gb|EGC82643.1| signal recognition particle-docking protein FtsY [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 385

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 188/312 (60%), Gaps = 3/312 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVA 61
             K   E++ +  K+  G   T       + ++ +   ++DD + +ELE++LI +DIG+ 
Sbjct: 74  KNKNTDENVGFFSKIKNGLTKTRDSFTSNLKNLFTRNVKIDDDLYDELEEILISADIGMT 133

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR-PHVILVVGV 119
              +IV++L  +   +++     +Y V  E++ + L   +     +       + LV+GV
Sbjct: 134 STVEIVDQLRDEIKKRNIKNSEEIYPVLKEIMIEKLDENNLSNELNIKDSELSIFLVIGV 193

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+  + + G  VMLAA DTFR+AAI+QL  WADR+  + V  + GSD +
Sbjct: 194 NGVGKTTTIGKLANSLKNEGKSVMLAAADTFRAAAIEQLGEWADRSDIEMVAHQEGSDPS 253

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A K A++K VDVLI DTAGRLHN   LM  + K+ + +     +A    L +LDA
Sbjct: 254 AVIFDAIKSAKSKNVDVLICDTAGRLHNKKNLMKELEKINKTIDTHAKNANRDNLLILDA 313

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q+  F  V   +GLI+TK+DG+A+GG + P+ V  K+PV ++GVGEG+NDLE
Sbjct: 314 TTGQNAVSQLREFKNVTDISGLILTKLDGSAKGGVIFPLQVELKVPVKYIGVGEGVNDLE 373

Query: 300 PFVAKDFSAVIT 311
            F ++ F   + 
Sbjct: 374 HFDSESFVEAMF 385


>gi|315445095|ref|YP_004077974.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           Spyr1]
 gi|315263398|gb|ADU00140.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           Spyr1]
          Length = 471

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 168/307 (54%), Gaps = 5/307 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +   + +L    A +   L   +  +I    LD+   EE+ED L+ +D+G  V + +V 
Sbjct: 167 PTEGRLDRLRGRLAKSQNTLGRSMLGLIGGGDLDEDSWEEVEDTLLIADLGPVVTESVVT 226

Query: 69  ELLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKT 125
            L  K  +  V  +     V    LI ++   L +       + +P V+LVVGVNG GKT
Sbjct: 227 ALRAKMASSKVRTEADARAVLREVLIAELQPDLDRAIRALPHADKPSVLLVVGVNGTGKT 286

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A  V    G+D A++A++A
Sbjct: 287 TTVGKLARVLVADGRRVVLGAADTFRAAAADQLQSWASRVGAQVVRGPEGADPASVAFDA 346

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                A   DV+++DTAGRLH  + LM  +GK+ RV+ +        VL VLDAT GQN+
Sbjct: 347 VDTGIASGADVVVVDTAGRLHTKTGLMDELGKVKRVVSKRAE--VDEVLLVLDATIGQNS 404

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q  +F      TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    
Sbjct: 405 LPQARVFAEAVDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAA 464

Query: 306 FSAVITG 312
           F   + G
Sbjct: 465 FVDALLG 471


>gi|171912491|ref|ZP_02927961.1| signal recognition particle protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 479

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 144/305 (47%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL+     +    ++ +        E+   L+ +D+   VA+ +VE + TK   
Sbjct: 2   FEALQEKLEGAFKKLRGHSKISESNISDSMREIRMGLLEADVDFKVAKDLVENVKTKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+++    + +  +L   +   + +    P  +L+ G+NG GKTT  GKL
Sbjct: 62  EEVLRTVSPSQQIVKIFHDELVVLLGEGTATLDLN---PPQRLLIAGLNGAGKTTTSGKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQ 190
           +  +   G K +L A D FR AA+ QL +  +          E   DA   A +  +  +
Sbjct: 119 AALLKKQGKKPLLVACDVFRPAAVKQLVVLGESIGVPVFQPEEGEKDAVRAAKQGLEWVE 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +   + I DTAGR   +  L+  + K+  V++      P  VL V DA TGQ A+   +
Sbjct: 179 KQGGGIAIFDTAGRQEVDEGLLEELIKIKNVVQ------PREVLLVADAATGQQAVSVAK 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TGL+MTK+DG ARGG L+ +      PV F+G+GE I+ LE F     +  I
Sbjct: 233 TFNDAIGITGLVMTKLDGDARGGALLSMKQVTGCPVKFVGMGEKIDQLEVFHPDRMAQRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|163744758|ref|ZP_02152118.1| signal recognition particle protein, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161381576|gb|EDQ05985.1| signal recognition particle protein, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 499

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L D+ V+  L +    L+ +D+ + VA+  V+ +  K   
Sbjct: 2   FENLSERLSGVFDRLTKQGALSDEDVKTALREVRVALLEADVSLPVARDFVKAVQDKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +   L    +P        P  IL+VG+ G GKTT   KL
Sbjct: 62  QAVTKSVTPGQQVVKIVHDALIDTLKGEGEPGALKIDSPPAPILMVGLQGGGKTTTTAKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +  G +V++A+ D  R AA++QL I   +   D +    G     +A  A  QA 
Sbjct: 122 AKRLKERDGKRVLMASLDVNRPAAMEQLAILGVQIGVDTLPIVKGESPVQIAKRAKTQAG 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  +  LM  +  +       D   P   L V+D  TGQ+A+   E
Sbjct: 182 LGGYDVYMLDTAGRLSIDEELMQQVKAV------RDVANPRETLLVVDGLTGQDAVHTAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  I
Sbjct: 236 NFDERIGITGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGLGEKMDALETFEPERIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|54287932|gb|AAV31413.1| putative signal recognition particle protein [Toxoptera citricida]
          Length = 449

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 80/303 (26%), Positives = 153/303 (50%), Gaps = 17/303 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F+S + +L + + +II+  RL +D +++ + +    L+ +D+ ++V +K +  +  K   
Sbjct: 2   FSSLAERLSKSLRNIINKGRLTEDNIKDTIREVRKALLEADVTLSVVKKFIINVKKKAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +++      Q  +  V   +   +       N   +  P +IL++G+ G GKTT + K+
Sbjct: 62  HEINKSFTPGQEFIKIVRNELILSMGDQDNDLNLS-TQPPAIILIIGLQGAGKTTTVAKI 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    K+++ + D +R+AAI QL+I + + + +F  S I      +  EA + A+
Sbjct: 121 AKWIQNKYKKKILITSTDVYRAAAIKQLEILSSQININFYLSNINQKPINITKEAIQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  D+L+IDTAGRLH +  +M  I ++           P   L V+D+  GQ+A+    
Sbjct: 181 LKFYDILLIDTAGRLHIDEKMMNEIQEIQNFSN------PIETLLVVDSMMGQDAINMAT 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +G+I+TK D  +R G  + +       + F+G GE I +LE F  +  +  I
Sbjct: 235 NFNKYLSISGIILTKTDSDSRSGIALSMRYITGKSIKFIGTGEKITNLEIFHPERMADKI 294

Query: 311 TGC 313
            G 
Sbjct: 295 LGM 297


>gi|289450230|ref|YP_003475458.1| signal recognition particle protein [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184777|gb|ADC91202.1| signal recognition particle protein [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 452

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FAS S KL+     I    R+ +   +    E+   L+ +D+   V + ++ E+      
Sbjct: 4   FASLSDKLQAITAKIGRQSRITEADLKTMMREIRLALLEADVNYQVVKNLIAEISEAAKG 63

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q+++  V E + ++L         + S    VI++ G+ G GKTT   KL
Sbjct: 64  EAVMQSLTPGQQIVKIVHESLIELLSVGETKLKVNPSGF-TVIMLYGLQGSGKTTTAAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            K +   G K ++ + DT R AA +QL I  D+       +     AA +A EA ++A+ 
Sbjct: 123 GKILKSRGKKPLVTSVDTHRPAAAEQLNILCDKIQVPCYINPPEKHAAKIAREAVERAKY 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D LI+DTAGR+  +  LM  + ++   +K      P   L ++D+  GQ A+     
Sbjct: 183 LLCDTLIVDTAGRMTIDEELMQELKELENTVK------PDERLLIVDSMIGQEAVNIALE 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G IMTK+DG ARGG  + I    + P+ F+  GE  + +E F     ++ I 
Sbjct: 237 FERQIGLDGFIMTKLDGDARGGAALSISKMTEKPIKFICTGEKTDAIEEFHPDRLASRIL 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GMGD 300


>gi|294155954|ref|YP_003560338.1| signal recognition particle protein [Mycoplasma crocodyli MP145]
 gi|291600518|gb|ADE20014.1| signal recognition particle protein [Mycoplasma crocodyli MP145]
          Length = 448

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 144/308 (46%), Gaps = 22/308 (7%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           ++++K  A  S K      D+I        V  E++  L+ +D+ + V +  +  +  K 
Sbjct: 7   KRMSKALAKMSKKTVLKEEDLI-------EVIREIKMSLLEADVNLRVVKDFISNVKAKA 59

Query: 75  -----YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                  K    Q+ +  V E + K+L    K        +P++I++ G+ G GKTT + 
Sbjct: 60  LESNLVGKLNPSQQFIKIVHEELIKVLGG--KVVELKIEKKPYIIMMCGLQGSGKTTAVA 117

Query: 130 KLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           KLS          K ++ A D +R AA+DQL   A     D+      + A  +   A  
Sbjct: 118 KLSYYFKKKHNIEKPLVVAADIYRPAAVDQLVTLAKSIQVDYYQEGTNNTAENIVKNALD 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A   K D++IIDTAGRL  +  LM  +  + ++ K      P  +L V DA +GQ+ + 
Sbjct: 178 EAYKNKNDLIIIDTAGRLSIDEKLMQELQNIKKIAK------PDEILFVSDALSGQDIIN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             E FH+    TG I+TK+D  ARGG  + I     +P+ F+G GE +++L+ F     +
Sbjct: 232 VAETFHSNLKLTGSIITKLDSDARGGAALSIRQVLNLPIRFIGTGEKVSNLDLFYPDRMA 291

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 292 DRILGMGD 299


>gi|321462130|gb|EFX73155.1| hypothetical protein DAPPUDRAFT_325390 [Daphnia pulex]
          Length = 506

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 148/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ SD+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATVINEEVLNAMLKEICAALLESDVNIRLVKQLRENVKSVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      RP+VI+ VG+ G GKTT   KL
Sbjct: 63  DDMAGGLNKRRMIQSAVFKELIKLVDPGVKPYQ-PVKGRPNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E     +A
Sbjct: 122 AYHYMKKGWKSCLVCADTFRAGAYDQLKQNATKARIPFYGSYTEVDPVVIAQEGVDMFKA 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  + +++DT+GR      L   + ++   +K      P +++ V+DA+ GQ    Q   
Sbjct: 182 ENFEFIVVDTSGRHKQEDSLFEEMLQVSNAVK------PDNIIFVMDASIGQACEAQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + PV F+G GE I+DLE F  K F + + 
Sbjct: 236 FKEKVDVGSVIITKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDLESFKTKPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GLGD 299


>gi|218132446|ref|ZP_03461250.1| hypothetical protein BACPEC_00305 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992556|gb|EEC58558.1| hypothetical protein BACPEC_00305 [Bacteroides pectinophilus ATCC
           43243]
          Length = 309

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 179/304 (58%), Gaps = 6/304 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    KL +G   T   +  G+  I S    +DD   EELE+ +I  DIGV   ++I+EE
Sbjct: 1   MGLFSKLKEGLTKTRDHITSGMDAIFSGFSSIDDDFYEELEETMIMGDIGVCATEEILEE 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGVGKTTV 127
           L  + +   V   +   D  +L+   +          +DF +R  +I+++GVNGVGKTT 
Sbjct: 61  LKERVHENKV---KNPADCKQLLIDTIKEKMDLGENAYDFENRKSIIILIGVNGVGKTTS 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GK++  +   G KV+LAA DTFR+AAI+QL  WA+R+  D +    GSD AA+ ++A  
Sbjct: 118 AGKIAAHLRGQGRKVILAAADTFRAAAIEQLTEWANRSQCDIIAQSEGSDPAAVIFDAVA 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+K DVL+ DTAGRLHN   LM  + K+ RV++R    A    L VLDATTGQNAL 
Sbjct: 178 AAKARKADVLLCDTAGRLHNKKNLMEELRKIDRVIEREYADAYRENLLVLDATTGQNALS 237

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q+  F  V   TG+I+TKMDGTA+GG  I I     +PV ++GVGE I DL+ F ++D+ 
Sbjct: 238 QLREFKDVMDITGIILTKMDGTAKGGIAIAIQTEFGVPVKYIGVGEHIEDLQKFNSEDYV 297

Query: 308 AVIT 311
             I 
Sbjct: 298 NAIF 301


>gi|46130818|ref|XP_389140.1| hypothetical protein FG08964.1 [Gibberella zeae PH-1]
          Length = 521

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 84/302 (27%), Positives = 141/302 (46%), Gaps = 15/302 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
                 ++   +T++   + LD+   +E+   L+ +D+ V +  ++ + + T    K++ 
Sbjct: 3   LQDLGRRINAAVTNLTREQNLDE---KEICAALLEADVNVKLVGQLRKSIKTTVNFKELP 59

Query: 81  VQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                  + +      + K++ P ++PF      + +VI+ VG+ G GKTT   KL++  
Sbjct: 60  PAVNKKRLIQKAVFDELVKLVDPHAEPFRPK-KGKSNVIMFVGLQGAGKTTTCTKLARHY 118

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G K  L   DTFR+ A DQLK  A +    +  S   +D A +A     Q + ++ +
Sbjct: 119 QSRGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAEVARAGVDQFKKERFE 178

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+I+DT+GR    S L   +  +   +K      P   + VLDA+ GQ A  Q + F   
Sbjct: 179 VIIVDTSGRHRQESALFQEMVDIQEAIK------PDETIMVLDASIGQQAESQAKAFKEA 232

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A    +I+TK DG A GGG I  V     P+ F+G GE + D E F  + F   + G  D
Sbjct: 233 ADFGAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDFEKFAPQQFVQKLLGMGD 292

Query: 316 YG 317
             
Sbjct: 293 MA 294


>gi|282165325|ref|YP_003357710.1| signal recognition 54 kDa protein [Methanocella paludicola SANAE]
 gi|282157639|dbj|BAI62727.1| signal recognition 54 kDa protein [Methanocella paludicola SANAE]
          Length = 442

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 85/301 (28%), Positives = 140/301 (46%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    LK  I  + ++ ++D    D V ++++  LI++D+ V +  K+   +  +   
Sbjct: 3   LDNLGSSLKSAIQKLANAGKIDKEIIDDVVKDIQRALIQADVNVKLVMKLSNRIKERALT 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +         + V  +++  L+ +        +  P  I++VG+ G GKTT   KL++  
Sbjct: 63  EAPPAGMDSREHVLRIVYTELVNIIGKAT-PIALEPQTIMMVGLQGSGKTTTTAKLARFF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  GLK  +   DT+R  A DQL    ++    F       DA A+     K+ Q  K D
Sbjct: 122 SRKGLKPAVICADTYRPGAYDQLSQLCEKLGVMFYGERDNKDAVAIVRNGLKETQ--KYD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I+DTAGR    + L+  +  +  +              VLDA  GQ A  Q + F+  
Sbjct: 180 VRIVDTAGRHALETELIKEMKDIWGLTN------FTHRFLVLDAAIGQQASEQAKAFNDA 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G TG+++TK+DGTA+GGG +  V      + F+GVGE  +DLE F    F + + G  D
Sbjct: 234 VGITGVVITKLDGTAKGGGALSAVSDTNTSIAFIGVGETPDDLERFDPDGFISRLLGMGD 293

Query: 316 Y 316
            
Sbjct: 294 L 294


>gi|297180325|gb|ADI16543.1| signal recognition particle GTPase [uncultured bacterium
           HF4000_009C18]
          Length = 448

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 141/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + K +E  + +  +  L++   EE    +   L+ +D+ + VA+++++ +  K   
Sbjct: 2   FENLTSKFEEIFSSLKKAPSLNEAQVEEGLRKIRQALLEADVALPVAKELIKNIKPKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++       Q ++  V + I K+L       N +    P  +++VG+ G GKTT   KL
Sbjct: 62  QEIIRSTTPGQMIVKVVFDEIVKILGDTQSELNLNAV-PPVCLMLVGLQGSGKTTTAAKL 120

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +  +   K ++ + D +R AA +QL I  ++ S   + +        +   A   A 
Sbjct: 121 AKYLEQNNKKKSLMVSLDVYRPAAQEQLNILGEKNSIQTLPTVKDQLPLDIVKRALNAAS 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDV+I DTAGR   +  +M  I ++  +        P   + V D+ TGQ A+   +
Sbjct: 181 LSGVDVIIFDTAGRTQIDLSMMNEIKEIKSMAN------PTETILVADSLTGQVAVNVAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      T +I+T++DG  RGG  + +      P+ F+G GE I  L+ F     +  I
Sbjct: 235 EFKKTVDLTSIILTRVDGDGRGGAALSMKFATNTPIKFMGTGEKIEQLDVFHPDRIANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|312863726|ref|ZP_07723964.1| signal recognition particle-docking protein FtsY [Streptococcus
           vestibularis F0396]
 gi|311101262|gb|EFQ59467.1| signal recognition particle-docking protein FtsY [Streptococcus
           vestibularis F0396]
          Length = 434

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 118/313 (37%), Positives = 179/313 (57%), Gaps = 3/313 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           + +  AS++ +   K  +    T       + +  ++ RR+D+   EELE++LI SD+GV
Sbjct: 118 TEEVQASKTETEQEKYNRTLKKTRTGFAARLNEFFANFRRVDEEFFEELEEMLILSDVGV 177

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            VA ++ E+L  +   ++V     L    + +L+           + +F     V+L VG
Sbjct: 178 NVATQLTEDLRYEARLENVKKTEDLQRLIIEKLVDIYEKDDVYKEHINFQDGLTVMLFVG 237

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     +D 
Sbjct: 238 VNGVGKTTSIGKLAHKYKQEGKKVMLVAADTFRAGAVAQLVEWGHRVDVPVVTGAEKADP 297

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LD
Sbjct: 298 ASVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLALD 357

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A+TGQNAL Q + F  +   TGL++TK+DG+A+GG ++ I     IPV  +G GE I+D+
Sbjct: 358 ASTGQNALSQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKIDDI 417

Query: 299 EPFVAKDFSAVIT 311
             F +++F   + 
Sbjct: 418 GEFHSEEFMQGLL 430


>gi|113474581|ref|YP_720642.1| signal recognition particle-docking protein FtsY [Trichodesmium
           erythraeum IMS101]
 gi|110165629|gb|ABG50169.1| signal recognition particle-docking protein FtsY [Trichodesmium
           erythraeum IMS101]
          Length = 553

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 106/318 (33%), Positives = 180/318 (56%), Gaps = 11/318 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V++E ++W++KL +G   T   L   +  I+    L+     E+E +L+++D+GV    
Sbjct: 234 QVSAEEITWLKKLRQGLDRTRRNLLNQLKAIVGQGPLNQDAVMEIESMLLQADVGVEATD 293

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW----------DFSHRPHVI 114
            I+E L  K  ++ + ++  +  + +++  +L    K                    ++ 
Sbjct: 294 YIIETLQNKLRSEALPLKEAIAYLKKILRDILDEPFKDLEVASAAYNLTFVPEKDSLNIW 353

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE- 173
           L+ GVNG GKTT IGK++   + +  K ++AA DTFR+AA++QL IW  R+  + + +  
Sbjct: 354 LLNGVNGAGKTTTIGKIAHLATKSDYKCLIAAADTFRAAAVEQLTIWGQRSEVEVIANPG 413

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +D AA+ ++A   AQ++  ++L++DTAGRL N   LM  + K+ R++ R  P A    
Sbjct: 414 KNTDPAAIVFDAILAAQSRNTELLLVDTAGRLQNKKNLMDELSKIHRIVNRKAPDAVVES 473

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLDAT GQN LRQ E+F   A  +G+++TK+DGTA+GG  + +V    +P+ F+GVGE
Sbjct: 474 LLVLDATLGQNGLRQAEVFAKAAKLSGVVLTKLDGTAKGGVALAVVKQLGLPIRFIGVGE 533

Query: 294 GINDLEPFVAKDFSAVIT 311
            I DL PF + +F   + 
Sbjct: 534 KIEDLRPFSSYEFVEALI 551


>gi|15604608|ref|NP_221126.1| cell division protein FTSY (ftsY) [Rickettsia prowazekii str.
           Madrid E]
 gi|6016061|sp|O05948|FTSY_RICPR RecName: Full=Cell division protein ftsY homolog
 gi|2073477|emb|CAA72477.1| cell division protein [Rickettsia prowazekii]
 gi|3861303|emb|CAA15202.1| CELL DIVISION PROTEIN FTSY (ftsY) [Rickettsia prowazekii]
 gi|292572424|gb|ADE30339.1| Signal recognition particle-docking protein FtsY [Rickettsia
           prowazekii Rp22]
          Length = 303

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 128/303 (42%), Positives = 186/303 (61%), Gaps = 1/303 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           ++   KL +  + TS  +  GI  I   R+LD     ELE+LLI SDI ++V   I+EE 
Sbjct: 2   ITIFNKLKQSLSKTSNTISAGIDKIFYKRKLDKETLNELEELLISSDISISVVTHIIEEF 61

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++ K +    V   +++LI + L     PF     ++ ++ILV GVNGVGKTT IGK
Sbjct: 62  KNVKFDKTIDSDTVKEAIAKLIEQQLSKSEIPFTLS-ENKLNIILVCGVNGVGKTTTIGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS   S  G KV +AA DTFR+AAI+QL  W  R +A  +  +  +D A++AY A +++ 
Sbjct: 121 LSALYSAEGKKVAVAACDTFRAAAINQLSSWVHRANALLITGKASADPASVAYRAIEESI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +D+L IDTAGRLHNN  LM  + K+++V+K+LD +AP   + ++DA TGQN   Q+E
Sbjct: 181 KQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSILIIDAITGQNTYNQIE 240

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ V   TGLI+TK+DG+A+ G L+  V    +PVYF+G+GE I DL+ F   DFS  +
Sbjct: 241 YFNDVTNLTGLIVTKLDGSAKAGVLVGAVQKFNLPVYFIGIGEKIEDLKIFNRHDFSRSL 300

Query: 311 TGC 313
            G 
Sbjct: 301 VGL 303


>gi|310779168|ref|YP_003967501.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ilyobacter
           polytropus DSM 2926]
 gi|309748491|gb|ADO83153.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ilyobacter
           polytropus DSM 2926]
          Length = 447

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +   + +E    +    +L +       +E+   L+ +D+   V ++ V ++  K   
Sbjct: 2   LDNLGTRFQEIFKKVKGHGKLSEDNIKSALKEVRLSLLEADVNYKVVKEFVNKIKEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V++ + ++L   +        + P VI++ G+ G GKTT   KL
Sbjct: 62  EEVITGINPGQQFVKIVNDELVELLGGTNARLTKSAKN-PTVIMLAGLQGAGKTTFAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G +  L   D +R AA+ QL++  ++        E   DA  +  +    A+ 
Sbjct: 121 AKFLKKKGERPYLVGADVYRPAAMKQLQVLGEQIDVPVHIQEGSKDARGICSDGLNVAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                +I+DTAGRLH +  LM  +  + +         P  +L V+DA  GQ+A+   E 
Sbjct: 181 NNATYVILDTAGRLHVDESLMEELKDIKKA------TRPQEILLVVDAMIGQDAVNLAES 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+      G+++TK+DG  RGG  + I      P+ F+G+GE I+D+E F  +   + I 
Sbjct: 235 FNNSLNIDGVVLTKLDGDTRGGAALSIKAVVGKPIKFIGIGEKIDDIELFHPERLVSRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|308235260|ref|ZP_07665997.1| FtsY signal recognition particle [Gardnerella vaginalis ATCC 14018]
          Length = 369

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 179/305 (58%), Gaps = 7/305 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L    A+++      + +I+S   L +   +++ED L+ +D+G   + ++VE L 
Sbjct: 66  SRVTRLRSKLANSANPFGRALFNILSKDNLSEEDWQDVEDTLLMADVGAQASDELVESLR 125

Query: 72  TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFS--HRPHVILVVGVNGVGKTTV 127
                   +  + + ++  ++L+  +     +  N D S  H+P VI++VGVNG GKTT 
Sbjct: 126 KDARISGTASAQDVREILRAKLLDIVGAKTDRSLNADSSKAHKPSVIMMVGVNGTGKTTT 185

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAF 186
            GKL++ M      V+LAA DTFR+AA DQL+ WA+      V SE  G+D A++A++  
Sbjct: 186 AGKLARLMVSKNRSVILAAADTFRAAAADQLETWANAVGVKIVRSEKDGADPASVAFDGA 245

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    DVLI+DTAGRL N + LM  +GK+ RV+++  P     VL VLDATTGQN +
Sbjct: 246 AKAKESNSDVLIVDTAGRLQNKANLMDELGKIRRVIEKTVP--VDEVLLVLDATTGQNGM 303

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F    G TG+++TK+DG+A+GG ++ +     +PV  +G+GEG +DL PF  + F
Sbjct: 304 VQAKVFAEAIGITGVVLTKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFDPESF 363

Query: 307 SAVIT 311
              I 
Sbjct: 364 VDGIL 368


>gi|311113983|ref|YP_003985204.1| cell division protein FtsY [Gardnerella vaginalis ATCC 14019]
 gi|310945477|gb|ADP38181.1| cell division protein FtsY [Gardnerella vaginalis ATCC 14019]
          Length = 373

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 179/305 (58%), Gaps = 7/305 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S + +L    A+++      + +I+S   L +   +++ED L+ +D+G   + ++VE L 
Sbjct: 70  SRVTRLRSKLANSANPFGRALFNILSKDNLSEEDWQDVEDTLLMADVGAQASDELVESLR 129

Query: 72  TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFS--HRPHVILVVGVNGVGKTTV 127
                   +  + + ++  ++L+  +     +  N D S  H+P VI++VGVNG GKTT 
Sbjct: 130 KDARISGTASAQDVREILRAKLLDIVGAKTDRSLNADSSKAHKPSVIMMVGVNGTGKTTT 189

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAF 186
            GKL++ M      V+LAA DTFR+AA DQL+ WA+      V SE  G+D A++A++  
Sbjct: 190 AGKLARLMVSKNRSVILAAADTFRAAAADQLETWANAVGVKIVRSEKDGADPASVAFDGA 249

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    DVLI+DTAGRL N + LM  +GK+ RV+++  P     VL VLDATTGQN +
Sbjct: 250 AKAKESNSDVLIVDTAGRLQNKANLMDELGKIRRVIEKTVP--VDEVLLVLDATTGQNGM 307

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++F    G TG+++TK+DG+A+GG ++ +     +PV  +G+GEG +DL PF  + F
Sbjct: 308 VQAKVFAEAIGITGVVLTKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLAPFDPESF 367

Query: 307 SAVIT 311
              I 
Sbjct: 368 VDGIL 372


>gi|254446631|ref|ZP_05060107.1| signal recognition particle-docking protein FtsY [Verrucomicrobiae
           bacterium DG1235]
 gi|198260939|gb|EDY85247.1| signal recognition particle-docking protein FtsY [Verrucomicrobiae
           bacterium DG1235]
          Length = 308

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 179/311 (57%), Gaps = 6/311 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LS  +K  +G A ++  + E    I   ++LD    EELE+ L  SD G    ++ + E 
Sbjct: 2   LSIFKKFKEGLAKSAKSIAEKTGGIFGRKKLDASSIEELEEALFASDFGYETTEE-IIEE 60

Query: 71  LTKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
               Y+KD ++  Q V    + ++ ++L        +    +P VI ++GVNG GKTT  
Sbjct: 61  TQAAYSKDKNLRGQDVAGIGASVLRRVLDGSEGRIQF-LEDKPTVICLIGVNGSGKTTTT 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL  +    G   MLAA DTFR+AAI+QLK W+ R   D +  + G+D+AA+A++A++ 
Sbjct: 120 AKLGYQYKQDGRNPMLAACDTFRAAAIEQLKEWSSRLGLDIIAGQHGADSAAVAFDAYQA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+  D LI+DTAGRLH  S LM  + K+ RVL++ D  APH  L V+D + G N++ Q
Sbjct: 180 AKARGHDTLIVDTAGRLHTKSNLMDELAKIRRVLQKHDETAPHYSLLVVDGSLGSNSIEQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F+   G  GL++TK+DGT+RGG L+ I    K+P++FLG GE   DL+ +   ++  
Sbjct: 240 ARVFNEKFGLDGLVVTKLDGTSRGGALVGIYRELKLPIFFLGFGEKPEDLQEYRVDNYVD 299

Query: 309 VITGCLDYGEE 319
            I G    GEE
Sbjct: 300 AIFG--GEGEE 308


>gi|212374986|pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
           Recognition Particle Receptor From The Archaeon
           Pyrococcus Furiosus
 gi|212374987|pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
           Recognition Particle Receptor From The Archaeon
           Pyrococcus Furiosus
 gi|212374988|pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
           Recognition Particle Receptor From The Archaeon
           Pyrococcus Furiosus
 gi|213424254|pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
           Recognition Particle Receptor From The Archaeon
           Pyrococcus Furiosus
          Length = 328

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 101/325 (31%), Positives = 157/325 (48%), Gaps = 30/325 (9%)

Query: 12  SWIRKLTKGFAS----------------TSLKLKEGITDIISSRRLDDGVREELEDLLIR 55
           S   KL +   S                    L + I  +    +  D   +ELE  L+ 
Sbjct: 6   SMFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLE 65

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPF-------NWDF 107
           +D+ + V   + E++  K   K V +       + E + + +  + +             
Sbjct: 66  ADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRK 125

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           + +P+VI+ VG NG GKTT I KL+  + + G  V++AA DTFR+ AI+QL+  A R   
Sbjct: 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGV 185

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +    G+D AA+AY+A + A+A+ +DV++IDTAGR   N  LM  + K+ RV K    
Sbjct: 186 KVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTK---- 241

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P+ V+ V DA  G   + Q   F+      G+I+TK+D  ARGG  + I      P+ 
Sbjct: 242 --PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPIL 299

Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312
           F+GVG+G +DL PF  + F   I G
Sbjct: 300 FVGVGQGYDDLRPFEKEWFLERIFG 324


>gi|312079906|ref|XP_003142374.1| signal recognition particle protein [Loa loa]
 gi|307762464|gb|EFO21698.1| signal recognition particle protein [Loa loa]
          Length = 530

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/314 (27%), Positives = 148/314 (47%), Gaps = 16/314 (5%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKI 66
           L +  K     A    K++  I+ +  +  +++     + +E+   L+ +D+ V + + +
Sbjct: 22  LGFTWKQKMVLADLGRKIRNAISKLGQATIINEDELNAMLKEVCAALLEADVNVRLVKVL 81

Query: 67  VEELLT----KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            + +         A  V+ +R++   V   + K++ P  KPF      +P++ + VG+ G
Sbjct: 82  KDNVKRTLDFDEMAGGVNKRRLIQRCVFTELMKLVDPGVKPFQ-PTKGKPNIFMFVGLQG 140

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F  S I  D   +
Sbjct: 141 SGKTTTCSKLAYYYQKKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYIEMDPVTI 200

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A     + +    +++++DT+GR    + L      M++V   ++P+   +++ V+DA+ 
Sbjct: 201 AASGVDKFKEDGFEIIVVDTSGRHKQEASLFEE---MLQVSNAVNPN---NIVFVMDASI 254

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ    Q   F        +I+TK+D  A+GGG +  V     PV F+G GE I+D EPF
Sbjct: 255 GQACEAQARAFSETVDVGSVIITKLDSHAKGGGALSAVAATHSPVIFIGTGEHIDDFEPF 314

Query: 302 VAKDFSAVITGCLD 315
             K F   + G  D
Sbjct: 315 EVKPFVQKLLGMGD 328


>gi|314930538|gb|EFS94369.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL067PA1]
          Length = 396

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 113/293 (38%), Positives = 181/293 (61%), Gaps = 5/293 (1%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           +++  L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S  
Sbjct: 100 NSNNALARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDP 159

Query: 83  RVLYDV--SELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
               +V   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ ++  G
Sbjct: 160 AHAREVLHHELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLAAEG 219

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +    + VDV+++
Sbjct: 220 KTVLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLV 279

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   T
Sbjct: 280 DTAGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVT 337

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G++++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   + G
Sbjct: 338 GIVLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNFVTGLMG 390


>gi|227484995|ref|ZP_03915311.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227236992|gb|EEI87007.1| Sec family type I general secretory pathway protein signal
           recognition particle protein FtsY [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 467

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 123/306 (40%), Positives = 187/306 (61%), Gaps = 9/306 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           S   +L KG + T       ++++ +   ++DD + +ELE++LI +DIG++   +IV+ L
Sbjct: 165 SIFDRLKKGLSKTRDSFTSSLSNLFTRNVKIDDDLYDELEEILISADIGMSSTIEIVDSL 224

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-----FSHRPHVILVVGVNGVGKT 125
            ++   + +     +Y V   + +++       N D        +  VILV+GVNGVGKT
Sbjct: 225 RSEIKKRSIKDSDKIYPV---LKEIMTQKLDENNLDNGIKFEKGKLTVILVIGVNGVGKT 281

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+    + G KVMLAA DTFR+AAIDQL+ WA+R   + +  + G+D +A+ ++A
Sbjct: 282 TTIGKLANNFKNDGKKVMLAAADTFRAAAIDQLQEWAERADVELIAHKEGADPSAVIFDA 341

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K A++K VD+LI DTAGRLHN   LM  + K+ R +     +A    L VLDATTGQNA
Sbjct: 342 IKSARSKDVDILICDTAGRLHNKKNLMQELEKINRTIDTHAVNANRENLLVLDATTGQNA 401

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q++ F  V   TGLI+TK+DGTA+GG + P+ V  ++PV ++GVGEGIN L+ F +  
Sbjct: 402 VSQLKEFKNVTDITGLILTKLDGTAKGGVIFPLQVEVEVPVKYIGVGEGINHLQKFDSNS 461

Query: 306 FSAVIT 311
           F   + 
Sbjct: 462 FVEAMF 467


>gi|85708915|ref|ZP_01039981.1| signal recognition particle GTPase [Erythrobacter sp. NAP1]
 gi|85690449|gb|EAQ30452.1| signal recognition particle GTPase [Erythrobacter sp. NAP1]
          Length = 493

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 152/309 (49%), Gaps = 20/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L +  VR+ + +    L+ +D+ + VA++ ++ +  K   
Sbjct: 2   FDNLSDRLGGVFDRLTGRGALSEQDVRDAMREVRVALLEADVALPVAKRFIDSVTEKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTV 127
           ++V       Q+V+  V + +  ML         +     +  P VI++VG+ G GKTT 
Sbjct: 62  QEVLKAVKPGQQVVKIVHDELVAMLSGEEGEGATEGLNLDAKPPVVIMMVGLQGSGKTTT 121

Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL K + +  G K M+A+ D  R AA +QL +  ++T    +    G     +A  A 
Sbjct: 122 TAKLGKLIRERHGKKAMMASLDVNRPAAQEQLAVLGEQTQVATLPVIAGQQPVDIARRAM 181

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+ +  DVL++DTAGRLH +  LMA +  + +V       AP  VL V+D+ TGQ+A+
Sbjct: 182 ESARLQNFDVLLLDTAGRLHVDEALMAEMKAVSQV------SAPTEVLLVVDSLTGQDAV 235

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F      TG+++T+MDG ARGG  + +      P+ F G GE ++ +E F     
Sbjct: 236 NVAQSFSGEVPLTGVVLTRMDGDARGGAALSMRAVTGKPIKFAGTGEKLDAIETFRPGSV 295

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 296 ADRILGMGD 304


>gi|315604552|ref|ZP_07879615.1| cell division protein FtsY [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313564|gb|EFU61618.1| cell division protein FtsY [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 412

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 179/309 (57%), Gaps = 11/309 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             + +L    AS S  L   I  ++S  +L     EE+E+ L+ +D+G+     ++E L 
Sbjct: 103 GRMERLRSRLAS-SGALGRAILGVLSRGKLSAADWEEIEESLLVADLGLEATDSLMEALK 161

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGK 124
            +   +  + +  +   + E +  ++ P             D   +P VIL+VGVNG GK
Sbjct: 162 RRVAVESTTDEVRVREILREELLALVGPDMDRSLDLARPTVDGCVKPAVILMVGVNGTGK 221

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAY 183
           TT +GKL++ +      V+L A DTFR+AA DQL  W +R   D V SE  G+D A++A+
Sbjct: 222 TTTVGKLARILVADDKSVLLGAADTFRAAAADQLATWGERVGVDVVRSEREGADPASVAF 281

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA ++   + VDV+++DTAGRL N S LM  +GK+ RV+ +  P A   VL VLDATTGQ
Sbjct: 282 EAVREGIERDVDVVLVDTAGRLQNKSTLMDELGKIKRVMSKQAPVA--EVLLVLDATTGQ 339

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N ++Q E+F    G TG+++TK+DG+A+GG ++ +  +  +PV F+G+GEG +DL PF  
Sbjct: 340 NGMKQAEVFAEATGVTGIVLTKLDGSAKGGIVVSVQRSLGVPVKFVGLGEGADDLAPFDP 399

Query: 304 KDFSAVITG 312
           + F   I G
Sbjct: 400 RGFVDAIVG 408


>gi|283769401|ref|ZP_06342300.1| signal recognition particle-docking protein FtsY [Bulleidia
           extructa W1219]
 gi|283104058|gb|EFC05442.1| signal recognition particle-docking protein FtsY [Bulleidia
           extructa W1219]
          Length = 323

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 158/307 (51%), Gaps = 15/307 (4%)

Query: 11  LSWIRKLT-------------KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRS 56
           +S++  L               GF  ++    + +  +    + +DD   E+L  +L+ +
Sbjct: 1   MSFLDSLKAAFHKKEDQATYLSGFKKSNQSFGDKLGQMKYRFKGVDDAFLEQLTIILLEA 60

Query: 57  DIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           D+G+  A  I E+L  K      ++ Q  +  + E + ++   ++       S+ P V L
Sbjct: 61  DVGIHTADYICEQLKMKCKEYPSITFQWAMNFLIETMQEVYEKVADTPIQFNSNGPTVFL 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           + GVNG GKTT   KL       G KV   A DTFR+ AI+QLK W +R     +  +  
Sbjct: 121 LEGVNGSGKTTTTAKLGYSFLKQGKKVAFTAADTFRAGAIEQLKEWGNRLGIPVIAGKEN 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D +A   +  + A+  +VD+L+ DTAGRL N   LMA + KM +V  R    APH+   
Sbjct: 181 GDPSAAIVDGCRYAKENQVDILLCDTAGRLQNKVNLMAELSKMNKVAGREISGAPHNTWL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQN L Q ++F      +G+I+TKMDGTA+GG ++ I     IPV +LG+GE  
Sbjct: 241 VLDATTGQNGLSQAKIFAESTQLSGIILTKMDGTAKGGIVLAIKHQLHIPVLYLGLGEKQ 300

Query: 296 NDLEPFV 302
            DL PF 
Sbjct: 301 EDLRPFD 307


>gi|15806836|ref|NP_295559.1| signal recognition particle protein [Deinococcus radiodurans R1]
 gi|6459616|gb|AAF11391.1|AE002024_2 signal recognition particle protein [Deinococcus radiodurans R1]
          Length = 452

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 140/304 (46%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   KL++ +  +   R+L +   +    E+   L+ +D+   VA+  V  +  +   
Sbjct: 2   FESLGNKLQDILEKLGRERQLTEAQVKASMREIRMALLEADVNFGVAKDFVARVSEQAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V     + Q V+  V + + + L   S         + +V  +VG+ G GKTT  GKL
Sbjct: 62  QQVLGSLNAGQTVIKLVHDELVQTLGGESAQ--PSLDKKNNVWFMVGLQGAGKTTSSGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G KV+L A DT R AA DQL++ + +     +    G   A       +    
Sbjct: 120 AAHYKKLGRKVLLVAADTQRPAARDQLEVLSKQVGVPVLKVNDGESPAETKARIEEHLAR 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRL  +  LM  +  +   L+      P   L V+DA TGQ AL   + 
Sbjct: 180 DPRDLVIVDTAGRLQIDEGLMNQLAALKAELQ------PTETLLVVDAMTGQEALNVAQA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G +GLIMTKMDG ARGG  +        P+YF GV E ++ LEPF     +  I 
Sbjct: 234 FDERIGVSGLIMTKMDGDARGGAALSARSVTGKPIYFAGVSEKLSGLEPFYPDRVAGRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|310288155|ref|YP_003939414.1| Cell division protein ftsY [Bifidobacterium bifidum S17]
 gi|309252092|gb|ADO53840.1| Cell division protein ftsY [Bifidobacterium bifidum S17]
          Length = 413

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 117/315 (37%), Positives = 182/315 (57%), Gaps = 13/315 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            V  ES S I++L    + +S    + + +I++   L +   E++ED L+ +D+G   ++
Sbjct: 103 DVPEESGSRIQRLKAKLSKSSNPFGKALFNILTKDNLSESDWEDVEDTLLLADVGAEASE 162

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDF--SHRPHVILVV 117
           ++V EL        ++ +    +V   +   L+ L      +  N D   +H+P VI++V
Sbjct: 163 QLVGELRRDAR---ITGKASPDEVRATLRDNLLDLVGRDTDRRLNVDKPDAHKPGVIIMV 219

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT  GKL++       KV++ A DTFR+AA DQL+ W  R +   V S+  G+
Sbjct: 220 GVNGTGKTTTAGKLARLFVSEDKKVVMGAADTFRAAAADQLETWGARVNVPVVRSDKDGA 279

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL V
Sbjct: 280 DPASVAFEAAARAKEDDADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLP--VDEVLLV 337

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +
Sbjct: 338 LDATTGQNGMAQAKVFAEAIGLTGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPD 397

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF  + F   I 
Sbjct: 398 DLAPFDPEGFVDGIL 412


>gi|255078482|ref|XP_002502821.1| type II secretory pathway family [Micromonas sp. RCC299]
 gi|226518087|gb|ACO64079.1| type II secretory pathway family [Micromonas sp. RCC299]
          Length = 382

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 107/317 (33%), Positives = 172/317 (54%), Gaps = 12/317 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLD--DGVREELEDLLIRSDIGVAVA 63
           +A ++   + ++ KG + T  KL   + ++++   LD  +   EELED L+  D G   A
Sbjct: 61  LAKKTKGDLDRVFKGTSKTREKLSY-MDEVLALWNLDGLEDTLEELEDTLLSVDFGPTTA 119

Query: 64  QKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLM------PLSKPFNWDFSHRPHVILV 116
             I++ +  +    ++     +   +   I  +L+        + P   +    P VI+V
Sbjct: 120 MNILDVVRERCEKGEIKTGAEVKAALKRAIVDILVRANDGKEGTAPLKLNEGDGPSVIMV 179

Query: 117 VGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VGVNG GKTT +GKLS +   ++G KVML  GDTFR+AA +QL  WA+R++      + G
Sbjct: 180 VGVNGGGKTTTVGKLSHRFAKESGAKVMLVPGDTFRAAAAEQLATWAERSAGVMATYKDG 239

Query: 176 SDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
               AL Y+A  +A     +D+++ DT+GRLH N  LM  +  + + + +    +PH V 
Sbjct: 240 MKPGALCYQAVDEAIKMGDIDIVLADTSGRLHTNCDLMDELAGIKKSIGKRMEGSPHEVA 299

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLD TTG N L Q   F+ +   TG+I+TK+DGT++GG ++ +V    +PV F+GVGE 
Sbjct: 300 LVLDGTTGLNMLNQAREFNKMVDVTGIILTKLDGTSKGGAVVSVVDELGVPVKFVGVGEA 359

Query: 295 INDLEPFVAKDFSAVIT 311
           I+DL+ F    F   + 
Sbjct: 360 IDDLQTFDPVSFVDALF 376


>gi|205373343|ref|ZP_03226147.1| signal recognition particle-docking protein FtsY [Bacillus
           coahuilensis m4-4]
          Length = 282

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 109/268 (40%), Positives = 161/268 (60%), Gaps = 3/268 (1%)

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDF-SHRPH 112
            +D+G     ++V+EL  +   +++     +  V SE + ++              +   
Sbjct: 15  SADVGFNTVMELVDELRMEVKRRNIQDTADVQSVISEKLVEIYQGDEGNSELSIQENDLT 74

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VIL VGVNGVGKTT IGK++    + G  V+LAAGDTFR+ AI+QL+ W DR     V  
Sbjct: 75  VILFVGVNGVGKTTTIGKMAHHFKEQGKSVVLAAGDTFRAGAIEQLEAWGDRVGVPVVKQ 134

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             GSD AA+ Y+A + A+++K D+L+ DTAGRL N   LM  + K+ RV++R  P APH 
Sbjct: 135 SEGSDPAAVMYDAVQAAKSRKADILLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHE 194

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL VLDATTGQNAL Q ++F      +G+++TK+DGTA+GG ++ I    +IPV F+G+G
Sbjct: 195 VLLVLDATTGQNALVQAKVFKEATDVSGIVLTKLDGTAKGGIVLAIRNELQIPVKFVGLG 254

Query: 293 EGINDLEPFVAKDFSAVITGCL-DYGEE 319
           E ++DL+ F  + +   +   L D  EE
Sbjct: 255 EKMDDLQSFDPEKYVYGLFSELVDQAEE 282


>gi|195014137|ref|XP_001983965.1| GH16182 [Drosophila grimshawi]
 gi|193897447|gb|EDV96313.1| GH16182 [Drosophila grimshawi]
          Length = 508

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++     + +E+   L+ +D+ +   +++ E +      
Sbjct: 3   LADLGRKITTALHSLSKATVINEEALSAMLKEICAALLEADVNIRQVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      + +VI+ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELIKLVDPGVKPYQ-PIKGKANVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A E     + 
Sbjct: 122 AYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +  +   +       P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVS------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKEKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|302338385|ref|YP_003803591.1| signal recognition particle protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301635570|gb|ADK80997.1| signal recognition particle protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 443

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDI-----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
               S K  +    +     IS + + D V EE++  L+ +D+ + V ++ V   + +  
Sbjct: 2   LERISDKFSDIFRQLSGKATISEKNIQDAV-EEIKVALLEADVNLRVVRRFVNRTIEEAK 60

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + V       Q+ +  V++ I ++L    +            IL++G+ G GKTT   K
Sbjct: 61  GEAVLKAVNPGQQFVKIVNDKIVQLLGDEHQDLELKGPDALSSILMMGLQGSGKTTTSAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L  ++   G +V+L A D  R AA+DQLK+   +   +    E   D   L  EA K A 
Sbjct: 121 LGLRLKKEGRRVLLVAADLVRPAAVDQLKVLGKQVDLEVFSLEKEKDPVKLVGEAKKYAI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               + +I+DT+GRLH +  +M  I  + RVL       P   L V D+ TGQ A+   +
Sbjct: 181 KSSFNTMIVDTSGRLHLDEEMMKQIVDIKRVLD------PQEQLFVADSMTGQEAVTIAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++TK D   RGG  + +      P+ ++GVGE   DL+PF  +  ++ I
Sbjct: 235 SFDEQVGISGVVLTKFDSDTRGGAALSLKSVTGKPIKYVGVGEKPEDLDPFYPERIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|162451180|ref|YP_001613547.1| cell division membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161161762|emb|CAN93067.1| cell division membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 453

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 173/302 (57%), Gaps = 3/302 (0%)

Query: 14  IRKLTKGFASTSLK--LKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           I  L KG             +  + + ++ +D  V E++E++L+ SD+GV   + +++E+
Sbjct: 142 IEGLRKGLTKVRESEGFFGRLKALFAGKKEIDPNVVEQIEEVLLTSDVGVKTTELLLDEI 201

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +     +++    ++D      K ++ +          +P V++VVGVNGVGKTT IGK
Sbjct: 202 RSALSRNELADTDKVWDALREHAKRILRVGAGGGLPLKAQPTVVMVVGVNGVGKTTTIGK 261

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++   G  V+LAAGDTFR+AA+ QL +W  R   + V  + G++  A+ ++A ++A+
Sbjct: 262 LATQLKAEGRTVVLAAGDTFRAAAVQQLNVWGKRVGCEVVRGKDGANPGAVIFDAIQKAK 321

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV++ DTAGRLH  + LM  + ++ R + +    APH  L VLDAT GQNA++Q  
Sbjct: 322 DTGADVVLADTAGRLHTKTNLMEELSRVARTMNKALEGAPHETLLVLDATNGQNAMQQAA 381

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F      TG+++TK+DGTA+GG ++ I   H +PV ++G+GE   DL  F   +F   +
Sbjct: 382 LFKEALPITGIVLTKLDGTAKGGVILGICAEHGLPVRYVGIGERAEDLREFEPDEFVEAM 441

Query: 311 TG 312
            G
Sbjct: 442 LG 443


>gi|157825358|ref|YP_001493078.1| Signal recognition particle protein [Rickettsia akari str.
           Hartford]
 gi|157799316|gb|ABV74570.1| Signal recognition particle protein [Rickettsia akari str.
           Hartford]
          Length = 449

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 150/309 (48%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       KL    + I++  ++D+ +R+ +   L+ SD+ + V +  + E+  
Sbjct: 1   MFKTLTQNLTKIFDKLAS--SGILTEAQIDNAMRD-IRVALLESDVALPVIKDFIAEVKK 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
                +V       Q ++  + E +  +L         + + +P +  L+VG+ G GKTT
Sbjct: 58  NALGHEVIKSVSPGQMIIKIIHEEMINLLASSESETKLNLNSKPPINFLMVGLQGSGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL+ ++ +   KV+L + DT+R AA +QL I A+    + +    G     +   A 
Sbjct: 118 ASGKLALRLKNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEQPLDIVTRAI 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    DV+I DTAGR   +  +M     +  +++      P   L V+D+ TGQ+A+
Sbjct: 178 AEAKISAYDVVIYDTAGRTQIDQEMMEEALAIKNIVE------PTETLLVIDSMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     +GLI++++DG ++GG  + +    K P+ FL  GE + DLE F A+  
Sbjct: 232 VTASNFNKKLEISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGEKLTDLEEFNAERL 291

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 292 ASRILDMGD 300


>gi|303233305|ref|ZP_07319976.1| signal recognition particle-docking protein FtsY [Atopobium vaginae
           PB189-T1-4]
 gi|302480605|gb|EFL43694.1| signal recognition particle-docking protein FtsY [Atopobium vaginae
           PB189-T1-4]
          Length = 299

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 111/301 (36%), Positives = 173/301 (57%), Gaps = 8/301 (2%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           + ++L +G   +     + I++I      +DD   E+LED L+  D+G  VA +IV+EL 
Sbjct: 4   FTQRLKEGLERSR----KAISEIFYFGAAVDDDFWEDLEDRLVMGDVGADVAGQIVDEL- 58

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +  A   + +        LI K+   +       F+  P  +L VG+NG GKTT +GKL
Sbjct: 59  -RLLAAQNNYKDASAIRGALIDKLASYVYVSDIDPFATYPACVLFVGINGAGKTTTVGKL 117

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +     A  + ++ A DTFR+AAI+QL++WA R     V  E GSD A++ ++  +QAQ 
Sbjct: 118 AYAACAAKKRCIIGAADTFRAAAIEQLEVWATRAQVPCVTRERGSDPASVCFDTLEQAQQ 177

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV++IDTAGRLH +  LM  + K++ + K+   + P  V+ VLDA+ GQN L Q   
Sbjct: 178 TNADVVLIDTAGRLHTSKDLMQELLKVVTITKKR-ANMPVYVVLVLDASCGQNGLVQARE 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+I+TK+DGT++GG  I      ++P++ +GVGE + DL+PF A DF+A + 
Sbjct: 237 FNEALGLDGMIVTKLDGTSKGGIAIRASHELQLPIFRIGVGETLEDLQPFSAHDFAAALV 296

Query: 312 G 312
           G
Sbjct: 297 G 297


>gi|195376317|ref|XP_002046943.1| GJ13160 [Drosophila virilis]
 gi|194154101|gb|EDW69285.1| GJ13160 [Drosophila virilis]
          Length = 508

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++     + +E+   L+ +D+ +   +++ E +      
Sbjct: 3   LADLGRKITTALHSLSKATVINEEALSAMLKEICAALLEADVNIRQVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      + +VI+ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELIKLVDPGVKPYQ-PVKGKANVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A E     + 
Sbjct: 122 AYHYQKRNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVDMFKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +  +   +       P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEMIIVDTSGRHKQEESLFEEMLAVSNAVS------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F + + 
Sbjct: 236 FKEKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|313623288|gb|EFR93529.1| signal recognition particle protein [Listeria innocua FSL J1-023]
          Length = 415

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 13/272 (4%)

Query: 50  EDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFN 104
              L+ +D+   V ++ ++ +  +    DV       Q+V+  V E +  ++        
Sbjct: 1   RLALLEADVNFKVVKQFIKTVSERAVGADVMKSLTPGQQVIKIVQEELTSLMGGEESKIG 60

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWAD 163
                 P VI++VG+ G GKTT     +  +      K +L A D +R AAI QL+    
Sbjct: 61  T-ADRPPTVIMMVGLQGAGKTTTSXXXANLLRKKYNRKPLLVAADIYRPAAIKQLETLGK 119

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           +                +A +A  +A+ + +D +IIDTAGRLH +  LM  + ++  +  
Sbjct: 120 QLDMPVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEIAT 179

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I     
Sbjct: 180 ------PTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTG 233

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            P+ F+  GE +  +E F     ++ I G  D
Sbjct: 234 KPIKFVATGEKMEAIETFHPDRMASRILGMGD 265


>gi|222152727|ref|YP_002561904.1| cell division protein FtsY [Streptococcus uberis 0140J]
 gi|222113540|emb|CAR41334.1| putative cell division protein FtsY [Streptococcus uberis 0140J]
          Length = 485

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 121/302 (40%), Positives = 175/302 (57%), Gaps = 7/302 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE++LI SD+GV+VA ++ EEL  +
Sbjct: 182 EKYQRSLKKTRNGFAARLNAFFANFRSVDEDFFEELEEMLILSDVGVSVATELTEELRQE 241

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVVGVNGVGKTTVIG 129
              ++      L  V  +I K++    K   ++          V+L VGVNGVGKTT IG
Sbjct: 242 AKLENAKKPDDLKRV--IIEKLVDIYEKDGTFNEAINLQEGLTVMLFVGVNGVGKTTSIG 299

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +    G KVML A DTFR+ A+ QL  WA R     V     +D A++ ++  ++A
Sbjct: 300 KLAYRYKAEGKKVMLVAADTFRAGAVAQLAEWARRVDVPVVMGAEKADPASVVFDGVEKA 359

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+ VD+L+IDTAGRL N   LMA + KM R++KR+ P APH  L  LDA+TGQNAL Q 
Sbjct: 360 VAQGVDILLIDTAGRLQNKENLMAELEKMGRIIKRVIPDAPHETLLALDASTGQNALSQA 419

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  +   TGLI+TK+DGTA+GG ++ I    +IPV F+G GE I+D+  F ++DF   
Sbjct: 420 KEFSKILPLTGLILTKIDGTAKGGVVLAIRQELEIPVKFIGFGEKIDDIGEFDSEDFMKG 479

Query: 310 IT 311
           + 
Sbjct: 480 LL 481


>gi|157826674|ref|YP_001495738.1| Signal recognition particle protein [Rickettsia bellii OSU 85-389]
 gi|157801978|gb|ABV78701.1| Signal recognition particle protein [Rickettsia bellii OSU 85-389]
          Length = 449

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 153/309 (49%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       +L    + +++  ++D  +R+ +   L+ SD+ + V +  V E+  
Sbjct: 1   MFKTLTQNLMKIFDRLVS--SGLLTEEQIDAALRD-IRVALLESDVALPVIKNFVAEVKQ 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           K   ++V       Q ++  + E +  +L         + + +P V +L+VG+ G GKTT
Sbjct: 58  KALGQEVIKSVSPGQMIIKIIHEEMINILSSSEDEIKLNLNAKPPVNLLMVGLQGSGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL+  + +   KV+L + DT+R AA +QL+I A+    + +    G     +   A 
Sbjct: 118 ASGKLALCLKNQNKKVLLVSLDTYRPAAQEQLEILANSVKINSLPIVKGDKPLDIVKRAM 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    D++I DTAGR   +  +M     + ++++      P   L V+D+ TGQ+A+
Sbjct: 178 AEAKLSAYDIVIYDTAGRTQIDQEMMNEAIAIKKIVE------PTETLLVIDSMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     +GLI++++DG ++GG  + +    + P+ FL  GE + DLE F AK  
Sbjct: 232 VTASSFNEQLEISGLILSRIDGDSKGGAALSVKYITQRPIKFLSSGEKLTDLEEFDAKRI 291

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 292 ASRILDMGD 300


>gi|322516386|ref|ZP_08069311.1| cell division protein FtsY [Streptococcus vestibularis ATCC 49124]
 gi|322125119|gb|EFX96512.1| cell division protein FtsY [Streptococcus vestibularis ATCC 49124]
          Length = 434

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 118/313 (37%), Positives = 179/313 (57%), Gaps = 3/313 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           + +  AS++ +   K  +    T       + +  ++ RR+D+   EELE++LI SD+GV
Sbjct: 118 TEEVQASKTETEQEKYNRTLKKTRTGFAARLNEFFANFRRVDEEFFEELEEMLILSDVGV 177

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            VA ++ E+L  +   ++V     L    + +L+           + +F     V+L VG
Sbjct: 178 NVATQLTEDLRYEARLENVKKTEDLQRLIIEKLVDIYEKDDIYKEHINFQDGLTVMLFVG 237

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     +D 
Sbjct: 238 VNGVGKTTSIGKLAHKYKQEGKKVMLIAADTFRAGAVAQLVEWGHRVDVPVVTGAEKADP 297

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LD
Sbjct: 298 ASVVFDGMEKALAEGVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETLLALD 357

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A+TGQNAL Q + F  +   TGL++TK+DG+A+GG ++ I     IPV  +G GE I+D+
Sbjct: 358 ASTGQNALSQAKEFSKITPLTGLVLTKLDGSAKGGVVLAIRQELDIPVKLIGFGEKIDDI 417

Query: 299 EPFVAKDFSAVIT 311
             F +++F   + 
Sbjct: 418 GEFHSEEFMQGLL 430


>gi|224283584|ref|ZP_03646906.1| Signal recognition particle GTPase [Bifidobacterium bifidum NCIMB
           41171]
 gi|313140735|ref|ZP_07802928.1| FtsY signal recognition particle [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133245|gb|EFR50862.1| FtsY signal recognition particle [Bifidobacterium bifidum NCIMB
           41171]
          Length = 413

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 117/315 (37%), Positives = 182/315 (57%), Gaps = 13/315 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            V  ES S I++L    + +S    + + +I++   L +   E++ED L+ +D+G   ++
Sbjct: 103 DVPEESGSRIQRLKAKLSKSSNPFGKALFNILTKDNLSESDWEDVEDTLLLADVGAEASE 162

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDF--SHRPHVILVV 117
           ++V EL        ++ +    +V   +   L+ L      +  N D   +H+P VI++V
Sbjct: 163 QLVGELRRDAR---ITGKASPDEVRATLRDNLLDLVGRDTDRRLNVDKPDAHKPGVIIMV 219

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT  GKL++       KV++ A DTFR+AA DQL+ W  R +   V S+  G+
Sbjct: 220 GVNGTGKTTTAGKLARLFVSEDKKVVMGAADTFRAAAADQLETWGARVNVPVVRSDKDGA 279

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL V
Sbjct: 280 DPASVAFEAAARAKEDDADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLP--VDEVLLV 337

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +
Sbjct: 338 LDATTGQNGMAQAKVFAEAIGLTGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPD 397

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF  + F   I 
Sbjct: 398 DLAPFDPEGFVDGIL 412


>gi|315604551|ref|ZP_07879614.1| signal recognition particle protein [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313563|gb|EFU61617.1| signal recognition particle protein [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 527

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +    + S   L +   +    ++   LI +D+ + V ++   ++  K Y 
Sbjct: 2   FGNLSDRLTQSFRTLRSRGVLTESDVDHAISDIRRALIDADVALPVVRQFTTQVRDKAYG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              S      Q+V+  V + + ++L   ++  N+  S  P V ++ G+ G GKTT+ GKL
Sbjct: 62  AARSKALNPGQQVVSIVHDELVEILGGATRELNFAESG-PTVFMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAFKQ 188
            K + + G  V+L A D  R  A+ QL++  +R        E G+   +   +A      
Sbjct: 121 GKWLREEGKTVLLVASDLQRPNAVQQLQVVGERAGVKVWAPEPGNGVGNPVEVARSGVDF 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+   ++V+I+DTAGRL  +  +M         +   D  +PH ++ VLDA  GQ+A+  
Sbjct: 181 ARKSGINVVIVDTAGRLGVDQEMMDQ------AIAIRDAVSPHEIMFVLDAMVGQDAVST 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F    G TG++++K+DG ARGG  + +      P+ F   GEG++D E F     + 
Sbjct: 235 STAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGAPILFASTGEGLDDFERFHPDRMAG 294

Query: 309 VITGCLD 315
            I    D
Sbjct: 295 RILDMGD 301


>gi|224373532|ref|YP_002607904.1| signal recognition particle protein [Nautilia profundicola AmH]
 gi|223589622|gb|ACM93358.1| signal recognition particle protein [Nautilia profundicola AmH]
          Length = 449

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 146/304 (48%), Gaps = 12/304 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              K++ GF S   K++    +    + LD     EL+  L+++D+   V + ++ E+  
Sbjct: 1   MFDKISDGFKSAINKIRMKDDEKALKKALD-----ELKKNLLKADVHFKVVKDLLREVEV 55

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     +     L  + + + K+L           S  P V+L+ G+ G GKTT   KL+
Sbjct: 56  ETKKAGIGKANFLKALDKTLTKILTAPGNYGFVYASKPPTVVLMTGLQGSGKTTTTAKLA 115

Query: 133 KKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
             +      KV++ A D  R AA++QLK  A++   D    E   D   +A    ++A+ 
Sbjct: 116 NYLKEFKKKKVLMVAADLQRLAAVEQLKQLAEQNGLDIFYDENSKDPVDIAKRGVEEAKE 175

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DV++IDTAGRL  +  LM  + K+   +       PH +  V D+ TG++AL   + 
Sbjct: 176 KFYDVVLIDTAGRLAIDDELMNELIKIKNEVN------PHEIFYVADSLTGKDALNTAKQ 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK DG ++GG  + I      P+ F+G GE + D+E FV +   + I 
Sbjct: 230 FDEKLDITGVILTKYDGDSKGGVALSIAHQVGKPLRFIGTGEKVQDIEVFVPERIVSRIM 289

Query: 312 GCLD 315
           G  D
Sbjct: 290 GAGD 293


>gi|167045712|gb|ABZ10359.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine bacterium HF4000_APKG2098]
          Length = 448

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/309 (25%), Positives = 143/309 (46%), Gaps = 16/309 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT  F      LK+  +  ++  ++D+G+R+ +   L+ +D+ + VA+++++ +  
Sbjct: 1   MFEDLTSKFEEIFSSLKKAPS--LNEAQVDEGLRK-IRQALLEADVALPVAKELIKNIKP 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K   +++       Q ++  V + + K+L       N + S  P  +++VG+ G GKTT 
Sbjct: 58  KAVGQEIIKSTTPGQMIVKVVFDEVVKILGDTKSELNLN-SVPPICVMLVGLQGSGKTTT 116

Query: 128 IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL+K +  +   K ++ + D +R AA +QL I  ++ S   +          +   A 
Sbjct: 117 AAKLAKYLEKNNKKKSLMVSLDVYRPAAQEQLNILGEKNSIQTLPIVKDQLPINIVKRAL 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A     D +I DTAGR   +  +M  I ++  +        P   + V D+ TGQ A+
Sbjct: 177 NAASLSGADAIIFDTAGRTQIDLSMMNEIKEIKSLAN------PIETILVADSLTGQVAV 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F      TG+I+T++DG  RGG  + +      P+ F+G GE I  L+ F     
Sbjct: 231 NVAQEFKKAVDLTGIILTRVDGDGRGGAALSMKFATNTPIKFMGTGEKIEQLDVFHPDRI 290

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 291 ANRILGMGD 299


>gi|50842926|ref|YP_056153.1| signal recognition particle receptor [Propionibacterium acnes
           KPA171202]
 gi|289426529|ref|ZP_06428272.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes SK187]
 gi|289427788|ref|ZP_06429499.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes J165]
 gi|295130983|ref|YP_003581646.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes SK137]
 gi|50840528|gb|AAT83195.1| signal recognition particle receptor [Propionibacterium acnes
           KPA171202]
 gi|289153257|gb|EFD01975.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes SK187]
 gi|289159052|gb|EFD07245.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes J165]
 gi|291375171|gb|ADD99025.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes SK137]
 gi|313763655|gb|EFS35019.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL013PA1]
 gi|313773593|gb|EFS39559.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL074PA1]
 gi|313794049|gb|EFS42073.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL110PA1]
 gi|313801436|gb|EFS42687.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL110PA2]
 gi|313807884|gb|EFS46365.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL087PA2]
 gi|313811645|gb|EFS49359.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL083PA1]
 gi|313816832|gb|EFS54546.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL059PA1]
 gi|313822225|gb|EFS59939.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL036PA1]
 gi|313823542|gb|EFS61256.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL036PA2]
 gi|313825869|gb|EFS63583.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL063PA1]
 gi|313829549|gb|EFS67263.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL063PA2]
 gi|313831386|gb|EFS69100.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL007PA1]
 gi|313834998|gb|EFS72712.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL056PA1]
 gi|313839844|gb|EFS77558.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL086PA1]
 gi|314914657|gb|EFS78488.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL005PA4]
 gi|314919230|gb|EFS83061.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL050PA1]
 gi|314920860|gb|EFS84691.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL050PA3]
 gi|314924619|gb|EFS88450.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL036PA3]
 gi|314954302|gb|EFS98708.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL027PA1]
 gi|314957419|gb|EFT01522.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL002PA1]
 gi|314963597|gb|EFT07697.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL082PA1]
 gi|314968571|gb|EFT12669.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL037PA1]
 gi|314974261|gb|EFT18357.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL053PA1]
 gi|314976734|gb|EFT20829.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL045PA1]
 gi|314978888|gb|EFT22982.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL072PA2]
 gi|314984436|gb|EFT28528.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL005PA1]
 gi|315079451|gb|EFT51444.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL053PA2]
 gi|315083523|gb|EFT55499.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL027PA2]
 gi|315089377|gb|EFT61353.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL072PA1]
 gi|315095401|gb|EFT67377.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL038PA1]
 gi|315099282|gb|EFT71258.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL059PA2]
 gi|315100484|gb|EFT72460.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL046PA1]
 gi|315106738|gb|EFT78714.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL030PA1]
 gi|315109081|gb|EFT81057.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL030PA2]
 gi|327328338|gb|EGE70100.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL096PA2]
 gi|327329797|gb|EGE71553.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL096PA3]
 gi|327444122|gb|EGE90776.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL043PA2]
 gi|327444999|gb|EGE91653.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL043PA1]
 gi|327446482|gb|EGE93136.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL013PA2]
 gi|327451932|gb|EGE98586.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL092PA1]
 gi|327455033|gb|EGF01688.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL087PA3]
 gi|327457679|gb|EGF04334.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL083PA2]
 gi|328752238|gb|EGF65854.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL020PA1]
 gi|328755135|gb|EGF68751.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL087PA1]
 gi|328758087|gb|EGF71703.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL025PA2]
 gi|328760089|gb|EGF73668.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL099PA1]
 gi|332675863|gb|AEE72679.1| cell division protein FtsY [Propionibacterium acnes 266]
          Length = 396

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 113/293 (38%), Positives = 180/293 (61%), Gaps = 5/293 (1%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           +++  L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S  
Sbjct: 100 NSNNALARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDP 159

Query: 83  RVLYDV--SELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
               +V   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G
Sbjct: 160 AHAREVLHHELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEG 219

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +    + VDV+++
Sbjct: 220 KTVLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLV 279

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   T
Sbjct: 280 DTAGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVT 337

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G++++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   + G
Sbjct: 338 GIVLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNFVTGLMG 390


>gi|239946690|ref|ZP_04698443.1| signal recognition particle protein [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239920966|gb|EER20990.1| signal recognition particle protein [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 449

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 151/309 (48%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       KL    + I++  ++D  +R+ +   L+ SD+ + V +  + E+  
Sbjct: 1   MFKTLTQNLTKIFDKLVS--SGILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQ 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           K   ++V       Q ++  + E +  +L         + + +P V  L+VG+ G GKTT
Sbjct: 58  KALGQEVIKSVSPGQMIIKIIHEEMINLLASSGNETKLNLNSKPPVNFLMVGLQGSGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+ ++ +   KV+L + DT+R AA +QL I A+    + +    G     +   A 
Sbjct: 118 ASSKLALRLKNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAI 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    DV+I DTAGR   +  +M     + ++++      P   L V+D+ TGQ+A+
Sbjct: 178 AEAKISAYDVVIYDTAGRTQIDKEMMEEALAIKKIVE------PTETLLVIDSMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     +GLI++++DG ++GG  + +    K P+ FL  GE + DLE F A+  
Sbjct: 232 VTASSFNEKLEISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGEKLTDLEEFDAERL 291

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 292 ASRILDMGD 300


>gi|110004076|emb|CAK98415.1| cell division protein ftsy [Spiroplasma citri]
          Length = 328

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 115/313 (36%), Positives = 174/313 (55%), Gaps = 17/313 (5%)

Query: 11  LSWIRKLT------------KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSD 57
           + + +KL             K    T L     I  +    ++ DD   EELE++LI SD
Sbjct: 1   MGFFQKLKAKREEKKQIKLEKALRKTRLTFSNDIKKLAHKYKKYDDQYLEELEEILIASD 60

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFS-HRPHVIL 115
           +G+ +  +I  ++  K+  K  S++     + E+I  +   P SK    +    R +VIL
Sbjct: 61  MGMNMVLQITNQIR-KKVRKGWSIEDTNDYLVEVIMDLYNDPKSKQNKLNIKDQRLNVIL 119

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EI 174
           +VGVNG GKTT I KL+K+  D    V+L AGDTFR+ A++QL  WA+R   + V   + 
Sbjct: 120 MVGVNGAGKTTTIAKLAKQFLDQKKSVLLVAGDTFRAGAVEQLNQWAERLYVNIVKPLKE 179

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G D A++ Y+   Q + ++VD++IIDTAGRL N   LM  + K+ R++KR  P APH  L
Sbjct: 180 GQDPASVIYDGLVQGKKEQVDIIIIDTAGRLQNKVNLMNELNKINRIIKREIPDAPHETL 239

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+D  TGQN + Q + F  V   +G+++TKMDGTA+GG ++ I     IPV  +G+GE 
Sbjct: 240 LVIDGVTGQNGISQAKNFSEVTDVSGIVLTKMDGTAKGGVVLAIKDQLNIPVKLIGLGEQ 299

Query: 295 INDLEPFVAKDFS 307
             DL+ F  + + 
Sbjct: 300 PVDLQEFDIEQYI 312


>gi|91205962|ref|YP_538317.1| Signal recognition particle protein [Rickettsia bellii RML369-C]
 gi|122990889|sp|Q1RHD6|SRP54_RICBR RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|91069506|gb|ABE05228.1| Signal recognition particle protein [Rickettsia bellii RML369-C]
          Length = 449

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 153/309 (49%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       +L    + +++  ++D  +R+ +   L+ SD+ + V +  V E+  
Sbjct: 1   MFKTLTQNLMKIFDRLVS--SGLLTEEQIDAALRD-IRVALLESDVALPVIKNFVAEVKQ 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           K   ++V       Q ++  + E +  +L         + + +P V +L+VG+ G GKTT
Sbjct: 58  KALGQEVIKSVSPGQMIIKIIHEEMINILSSSEDEIKLNLNAKPPVNLLMVGLQGSGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL+  + +   KV+L + DT+R AA +QL+I A+    + +    G     +   A 
Sbjct: 118 ASGKLALCLKNQNKKVLLVSLDTYRPAAQEQLEILANSVKINSLPIVKGEKPLDIVKRAM 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    D++I DTAGR   +  +M     + ++++      P   L V+D+ TGQ+A+
Sbjct: 178 AEAKLSAYDIVIYDTAGRTQIDQEMMNEAIAIKKIVE------PTETLLVIDSMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     +GLI++++DG ++GG  + +    + P+ FL  GE + DLE F AK  
Sbjct: 232 VTASSFNEQLEISGLILSRIDGDSKGGAALSVKYITQRPIKFLSSGEKLTDLEEFDAKRI 291

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 292 ASRILDMGD 300


>gi|313819669|gb|EFS57383.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL046PA2]
 gi|314962017|gb|EFT06118.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL002PA2]
 gi|315087203|gb|EFT59179.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL002PA3]
          Length = 396

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 113/293 (38%), Positives = 180/293 (61%), Gaps = 5/293 (1%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           +++  L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S  
Sbjct: 100 NSNNALARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDP 159

Query: 83  RVLYDV--SELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
               +V   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G
Sbjct: 160 AHAREVLHHELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLIAEG 219

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +    + VDV+++
Sbjct: 220 KTVLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLV 279

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   T
Sbjct: 280 DTAGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVT 337

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G++++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   + G
Sbjct: 338 GIVLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNFVTGLMG 390


>gi|124021725|ref|YP_001016032.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9303]
 gi|123962011|gb|ABM76767.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9303]
          Length = 484

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 106/315 (33%), Positives = 176/315 (55%), Gaps = 5/315 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             +K++ E + W+ +L +G   T     +G+ + +    L   V ++LE LL+R+D GV 
Sbjct: 167 KPEKISLEEIDWLGRLRRGLEKTRQGFVKGLLENLGDDPLTPEVLDDLETLLLRADAGVE 226

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVV 117
              ++++ L  +   + V     L  + + +  +L    +    D       R ++ L V
Sbjct: 227 ATDQVLDALRRRMNEEVVDPAEGLRFLKQQLCNLLEAPIQDTGTDLLAPERGRLNIWLFV 286

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGS 176
           GVNGVGKTT +GKL+     +G   ++AA DTFR+AA++Q+K+W  R+    +  S   +
Sbjct: 287 GVNGVGKTTTLGKLANLAVRSGYSALIAAADTFRAAAVEQVKVWGARSGVPVIANSTANA 346

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A   A++K  D++++DTAGRL     LM  + K+ R++ RL P A    L +
Sbjct: 347 DPAAVVFDAIGAARSKSTDLVLVDTAGRLQTKHNLMEELQKVRRIIDRLAPEARVESLLI 406

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA+ GQN LRQ   F   A  TG+++TK+DGT+RGG  + +    ++P+ F+G GEGI 
Sbjct: 407 LDASQGQNGLRQAMAFAQAAALTGVVITKLDGTSRGGVALAVASEARLPIRFIGAGEGIR 466

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF + +F   + 
Sbjct: 467 DLRPFNSFEFVEALL 481


>gi|297183607|gb|ADI19734.1| hypothetical protein [uncultured bacterium EB000_36F02]
          Length = 452

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 152/322 (47%), Gaps = 28/322 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + K +E  + +  S  LD+   +E    +   L+ +D+ + VA++ ++ +  K   
Sbjct: 2   FENLTNKFEEIFSSLKKSPSLDEKQVDEGLRNIRQALLEADVSLTVAKEFIDNIKPKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++       Q V+  V + + K+L   +   N +    P  +++VG+ G GKTT   KL
Sbjct: 62  QEIVRSTSPGQMVVKIVYDELVKLLGENNSEINLNAV-PPVPMMLVGLQGSGKTTTTAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +  +   K+M+ + D +R AA +QLK   ++ +   +        A +   A   A 
Sbjct: 121 AKYLEINKKKKIMMVSLDVYRPAAQEQLKSLGEQNNILTLPVIEDQLPADICRRAVSAAN 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               ++++ DTAGR   +  +M+ I ++  ++       P  +  V D+ TGQ A    +
Sbjct: 181 LNGAEIILFDTAGRTQIDLQMMSEIKQIESIIN------PTEIFLVADSLTGQVAAEVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+T+ DG ARGG  + +    ++P+ FLG+GE IN++E F     +  I
Sbjct: 235 EFKNTVNLTGIILTRADGDARGGAAVSMKYVSQVPIKFLGIGEKINNIEVFHPDRIANRI 294

Query: 311 TGCL-----------DYGEEKI 321
            G             D GEE I
Sbjct: 295 LGMGDIVTLVEKAAQDLGEENI 316


>gi|145224765|ref|YP_001135443.1| signal recognition particle-docking protein FtsY [Mycobacterium
           gilvum PYR-GCK]
 gi|145217251|gb|ABP46655.1| signal recognition particle-docking protein FtsY [Mycobacterium
           gilvum PYR-GCK]
          Length = 469

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 111/307 (36%), Positives = 168/307 (54%), Gaps = 5/307 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +   + ++    A +   L   +  +I    LD+   EE+ED L+ +D+G  V + +V 
Sbjct: 165 PTEGRLDRMRGRLAKSQNTLGRSMLGLIGGGDLDEDSWEEVEDTLLIADLGPVVTESVVT 224

Query: 69  ELLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKT 125
            L  K  +  V  +     V    LI ++   L +       + +P V+LVVGVNG GKT
Sbjct: 225 ALRAKMASSKVRTEADARAVLREVLIAELQPDLDRAIRALPHADKPSVLLVVGVNGTGKT 284

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A  V    G+D A++A++A
Sbjct: 285 TTVGKLARVLVADGRRVVLGAADTFRAAAADQLQSWASRVGAQVVRGPEGADPASVAFDA 344

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                A   DV+++DTAGRLH  + LM  +GK+ RV+ +        VL VLDAT GQN+
Sbjct: 345 VDTGIASGADVVVVDTAGRLHTKTGLMDELGKVKRVVSKRAE--VDEVLLVLDATIGQNS 402

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q  +F      TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    
Sbjct: 403 LPQARVFAEAVDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAA 462

Query: 306 FSAVITG 312
           F   + G
Sbjct: 463 FVDALLG 469


>gi|269468214|gb|EEZ79907.1| cell division protein FtsY [uncultured SUP05 cluster bacterium]
          Length = 281

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 120/278 (43%), Positives = 179/278 (64%), Gaps = 3/278 (1%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIH 93
           ++  + ++D + +ELE LLI +DIG+    K++E +      K +     LY  + + + 
Sbjct: 5   LLGKKEINDDLLDELETLLITADIGINTTDKVLESVRKNASRKILKNSDSLYQFLKDELR 64

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           K+L+      N +  +   VILVVGVNG GKTT IGKL+K   + G  VMLAAGDTFR+A
Sbjct: 65  KLLID-DNQLNINV-NSTFVILVVGVNGAGKTTTIGKLAKSFQNQGKSVMLAAGDTFRAA 122

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++QLK+W +R     V  + G+DAA++ Y+A++ A+AK +D+LI DTAGRLH    LM 
Sbjct: 123 AVEQLKVWGERNEIPVVAQDTGADAASVIYDAYESAKAKNIDILIADTAGRLHTQGNLMQ 182

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + K+ RVLK+ + +APH  + V+D  +GQNA+ Q + F+   G +G+ +TK+DGTA+GG
Sbjct: 183 ELEKIKRVLKKHNENAPHETMLVIDGGSGQNAINQAKEFNKTIGLSGICITKLDGTAKGG 242

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            +  I    K+PV ++GVGEGINDL+PF AK F   + 
Sbjct: 243 VVFAISDELKLPVRYIGVGEGINDLKPFNAKKFVDALF 280


>gi|25019706|gb|AAN71792.1| FtsY [Synechococcus elongatus PCC 7942]
          Length = 518

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 107/314 (34%), Positives = 176/314 (56%), Gaps = 5/314 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            ++++ E + W+  L +G   T   L   +   +    L     E +E LL+++D+GV  
Sbjct: 203 PEEISIEEIDWLSSLRRGLDKTRRSLVNQLKSAVGQGPLSADAVETIEALLLQADVGVEA 262

Query: 63  AQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             +I+     +L  +    + ++  +   + +L+ + L    +        R +V LV G
Sbjct: 263 TDRILTQLQAKLRQEALPPEQAIAYLKQLLQQLLDQPLETSGRYILAPEKGRLNVWLVCG 322

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNGVGKTT IGKL+   + +G + ++AA DTFR+AA++Q+K+W DR+  D + +    +D
Sbjct: 323 VNGVGKTTTIGKLAHLATKSGYRCLIAAADTFRAAAVEQVKVWGDRSEVDVIANPGQNTD 382

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A   AQA+  ++L++DTAGRL N   LM  + K+ R++ R  P A    L VL
Sbjct: 383 PAAVVFDAIAAAQARGTELLLVDTAGRLQNKKNLMDELAKVRRIIDRKAPDAIVESLLVL 442

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DAT GQN LRQ ++F   A  +G+ +TK+D TA+GG  + I    ++P+ FLG GE I D
Sbjct: 443 DATQGQNGLRQAQVFAEAAQLSGVALTKLDSTAKGGVALAIAQDLQLPIRFLGAGERIQD 502

Query: 298 LEPFVAKDFSAVIT 311
           L PF + +F   + 
Sbjct: 503 LRPFSSYEFIQALL 516


>gi|288574569|ref|ZP_06392926.1| signal recognition particle protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570310|gb|EFC91867.1| signal recognition particle protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 450

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 156/305 (51%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L      +    +L +        E+   L+ +D+   V + +VE +  +   
Sbjct: 2   FDALKERLDGVFGKLKGKGKLTEGDVQEALREVRRALLEADVNYKVVKGLVENIRRRAME 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q+V+  V E +  ++    KP        P ++++VG+ G GKTT   KL
Sbjct: 62  RSVLDSITPGQQVVAVVYEELMDLMGSEPKPLTIS-PKPPTLMMMVGLQGGGKTTSTVKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQ 190
           +K++S  G K ++ A D  R AA+DQL++ A+     F   E G  D   +   A + A+
Sbjct: 121 AKRLS-KGHKPLVVACDLRRPAAVDQLRVLAESAGVGFYGPEKGESDVLNVIDGALRYAR 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + +DV++ DTAGRL  +  +MA +  M   +      APH +L V+DA TGQ A+   E
Sbjct: 180 DRLMDVILFDTAGRLTVDDEMMAELDAMKARI------APHEILLVVDAMTGQEAVSVSE 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH+    TG++++K+DG ARGG  + ++ T  +P+ F GVGEGI+ LE F AK  +  I
Sbjct: 234 AFHSRMDLTGVVLSKVDGDARGGAALAVLATTGVPIKFAGVGEGIDALEVFDAKRMAERI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 MGMGD 298


>gi|33862284|ref|NP_893844.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9313]
 gi|33640397|emb|CAE20186.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9313]
          Length = 484

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 106/315 (33%), Positives = 176/315 (55%), Gaps = 5/315 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             +K++ E + W+ +L +G   T     +G+ + +    L   V ++LE LL+R+D GV 
Sbjct: 167 KPEKISLEEIDWLGRLRRGLEKTRQGFVKGLLENLGDDPLTPEVLDDLETLLLRADAGVE 226

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVV 117
              ++++ L  +   + V     L  + + +  +L    +    D       R ++ L V
Sbjct: 227 ATDQVLDALRRRMNEEVVDPAEGLRFLKQQLCNLLEAPIQDTGTDLLAPERGRLNIWLFV 286

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGS 176
           GVNGVGKTT +GKL+     +G   ++AA DTFR+AA++Q+K+W  R+    +  S   +
Sbjct: 287 GVNGVGKTTTLGKLANLAVRSGYTALIAAADTFRAAAVEQVKVWGARSGVPVIANSTANA 346

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A   A++K  D++++DTAGRL     LM  + K+ R++ RL P A    L +
Sbjct: 347 DPAAVVFDAIGAARSKSTDLVLVDTAGRLQTKHNLMEELQKVRRIIDRLAPEARVESLLI 406

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA+ GQN LRQ   F   A  TG+++TK+DGT+RGG  + +    ++P+ F+G GEGI 
Sbjct: 407 LDASQGQNGLRQAMAFAQAAALTGVVITKLDGTSRGGVALAVASEARLPIRFIGAGEGIR 466

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF + +F   + 
Sbjct: 467 DLRPFNSFEFVEALL 481


>gi|281342878|gb|EFB18462.1| hypothetical protein PANDA_011888 [Ailuropoda melanoleuca]
          Length = 488

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/277 (27%), Positives = 140/277 (50%), Gaps = 12/277 (4%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLY-DVSELIHKMLMP 98
            + +E+   L+ +D+ + + +++ E + +    +  A  ++ ++++   V + + K++ P
Sbjct: 14  AMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP 73

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             K +      + +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQL
Sbjct: 74  GVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQL 132

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K  A +    F  S    D   +A E  ++ + +  +++I+DT+GR      L   + ++
Sbjct: 133 KQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQV 192

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
              ++      P +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  
Sbjct: 193 ANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSA 246

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           V   K P+ F+G GE I+D EPF  + F + + G  D
Sbjct: 247 VAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 283


>gi|34556966|ref|NP_906781.1| signal recognition particle protein [Wolinella succinogenes DSM
           1740]
 gi|34482681|emb|CAE09681.1| SIGNAL RECOGNITION PARTICLE PROTEIN [Wolinella succinogenes]
          Length = 446

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 144/298 (48%), Gaps = 10/298 (3%)

Query: 21  FASTSLKLKEGITDII---SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           F + +   +  I  I      + L     EEL+  L+++D+     + +++ +  +  AK
Sbjct: 2   FDTLTESFRGAINKIRFHDDEKSLKKA-LEELKKALLKADVHYKAVKDLLKTVENETKAK 60

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
            +  +  L  + + + ++L           S  P V+L+ G+ G GKTT   KL+  +  
Sbjct: 61  GIGKESFLSALRQGLLEILQTSGSQGFVFASKPPTVVLMAGLQGSGKTTTTAKLASFLKT 120

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            G KV++AA D  R AA++QLK  + +   D    E  ++   +A  A  +A     DVL
Sbjct: 121 KGKKVLMAACDLQRLAAVEQLKQLSAQIEVDLYHEEESANPVQIAKNALHRANEGLYDVL 180

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  +  LM  +  +   +       PH V  V D+ +GQ+ +R  E FH    
Sbjct: 181 LVDTAGRLAIDEALMQELKSVKEAIH------PHEVFYVADSLSGQDGVRSAERFHQEMA 234

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +G+I++K DG ++GG  + I     IP+ F+G GE I DL+PF+       + G  D
Sbjct: 235 LSGVILSKFDGDSKGGVALSIAYQIGIPLRFIGSGEKIPDLDPFLPDRIVNRLMGAGD 292


>gi|254419772|ref|ZP_05033496.1| signal recognition particle-docking protein FtsY [Brevundimonas sp.
           BAL3]
 gi|196185949|gb|EDX80925.1| signal recognition particle-docking protein FtsY [Brevundimonas sp.
           BAL3]
          Length = 311

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 131/308 (42%), Positives = 195/308 (63%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +    W ++L+ G + +S ++ + +        L +   E LE+ L+ SD+G A + +IV
Sbjct: 4   TPKKGWFQRLSAGLSRSSKQMTDQVVASFVKEPLSEAALERLEEHLLESDLGPAASARIV 63

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E     ++ KD     V   ++E +   L P    F+     +P+V+L VGVNG GKTT 
Sbjct: 64  ERFRALKFGKDAQEHEVKEALAEAVAAELSPRQAAFDPLSGPKPYVVLFVGVNGSGKTTT 123

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +GK++  ++  G KVM+ AGDTFR+AA +QLK+WADR  A+F     G+DAA L ++A+ 
Sbjct: 124 LGKIAADLTAKGAKVMIVAGDTFRAAAREQLKVWADRAGAEFESRRDGADAAGLVFDAYA 183

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+A+  DV+++DTAGRL N S LM  + K++RVLK++DP APH  L VLDAT G+NAL 
Sbjct: 184 KARAEGFDVVLVDTAGRLQNKSALMDELLKIVRVLKKIDPAAPHDTLLVLDATVGRNALA 243

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q ++F   A  TG++MTK+DGTARGG L+P+      P+  +GVGEGI+DL+PF A+ FS
Sbjct: 244 QEQIFGRTAFVTGIVMTKLDGTARGGVLVPVAQASDAPLMLIGVGEGIDDLQPFDARAFS 303

Query: 308 AVITGCLD 315
             + G  D
Sbjct: 304 RSLVGLED 311


>gi|294675927|ref|YP_003576542.1| signal recognition particle protein [Rhodobacter capsulatus SB
           1003]
 gi|294474747|gb|ADE84135.1| signal recognition particle protein [Rhodobacter capsulatus SB
           1003]
          Length = 502

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVR---EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L  + V+    E+   L+ +D+ + V +  V+++ TK   
Sbjct: 2   FESLSERLGGVFERLTKQGALTAEDVKVAMREVRTALLEADVSLPVVRDFVKKVETKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V+      Q+V+  V + I  ML            + P  IL+VG+ G GKTT   KL
Sbjct: 62  AQVTKSITPGQQVVKIVHDEIVAMLSGEDAADALKIDNPPAPILMVGLQGGGKTTTTAKL 121

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++      +V++A+ D +R AA++QL I   +   D +    G  A  +A  A  QA 
Sbjct: 122 ARRLKEREKKRVLMASLDIYRPAAMEQLAILGTQIGVDTLPIVPGETAVQIAKRAKTQAA 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRLH + +LM        V +  D  +P   L V+D  TGQ A+   +
Sbjct: 182 MGGYDVYLLDTAGRLHIDEVLMGE------VQQVRDAVSPRETLLVVDGLTGQVAVEVAQ 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+++T+MDG  RGG  + +  T   P+ F+G+GE ++ LE F A   +  I
Sbjct: 236 EFDDKIGITGVVLTRMDGDGRGGAALSMRATTGKPIRFVGLGEKMDALETFEASRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|219121088|ref|XP_002185775.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582624|gb|ACI65245.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 510

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/315 (27%), Positives = 142/315 (45%), Gaps = 26/315 (8%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR- 74
           KL            +G+T+    + +D  +  ++   LI +D+ V +  ++   +  K  
Sbjct: 9   KLRDSLRKLQSASTQGVTE----KEVD-ALLSDVARALIEADVNVKLVMQLRASIKGKVE 63

Query: 75  --------YAKDVSVQRVL-----YDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVN 120
                      +V  QR L       V + +  +L P      +     +P+V+L VG+ 
Sbjct: 64  DLLDDDDEKQPNVRAQRDLAKTIQRAVVDELVALLSPTYAQKAYTMRKGKPNVVLFVGLQ 123

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT I K +      G K  +   DTFR+ A DQLK  A +    F  S   +D   
Sbjct: 124 GAGKTTSIAKFAHYYQRRGWKTAMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVV 183

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A +  +Q    + +V+I+DT+GR    S L   + ++   +       P + + V+DAT
Sbjct: 184 IAEDGVRQFVKDRYEVIIVDTSGRHKQESALFDEMQEISEAV------RPDNTVLVMDAT 237

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ    Q   FH       +I+TK+DG A+GGG +  V     P+ FLG GE  +DL+P
Sbjct: 238 QGQAVYDQALAFHNAVDVGAVIVTKLDGHAKGGGALSAVAATSSPILFLGSGEHFDDLDP 297

Query: 301 FVAKDFSAVITGCLD 315
           F A+ F + + G  D
Sbjct: 298 FNAQSFVSKLLGFGD 312


>gi|315081322|gb|EFT53298.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL078PA1]
          Length = 396

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 113/293 (38%), Positives = 180/293 (61%), Gaps = 5/293 (1%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           +++  L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S  
Sbjct: 100 NSNNALARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDP 159

Query: 83  RVLYDV--SELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
               +V   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G
Sbjct: 160 AHAREVLHHELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEG 219

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +    + VDV+++
Sbjct: 220 KTVLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLV 279

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   T
Sbjct: 280 DTAGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVT 337

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G++++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   + G
Sbjct: 338 GIVLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNFVTGLMG 390


>gi|293363907|ref|ZP_06610643.1| signal recognition particle protein [Mycoplasma alligatoris A21JP2]
 gi|292552397|gb|EFF41171.1| signal recognition particle protein [Mycoplasma alligatoris A21JP2]
          Length = 448

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 147/308 (47%), Gaps = 22/308 (7%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           ++++K  +  S K      D++        V  E++  L+ +D+ + V +  +  + TK 
Sbjct: 7   KRMSKALSKMSKKTVLKEEDLV-------EVIREIKMSLLEADVNLKVVKDFISNVKTKA 59

Query: 75  YAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
              ++       Q+ +  V E + ++L   +K        +P+VI+++G+ G GKTT   
Sbjct: 60  LEAELIGKLNPSQQFIKIVHEELIRVLG--NKVVELKIEKKPYVIMMIGLQGSGKTTATT 117

Query: 130 KLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           KLS          K ++ A D +R AA+DQL   A     D+    + + A  +     K
Sbjct: 118 KLSYYFRKKHAIEKPLVVAADIYRPAAVDQLVTLAKSIQVDYYEEGVKNSAENIVTNGLK 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A   K D++IIDTAGRL  +  L+  +  + ++ K      P  +L V DA +GQ+ + 
Sbjct: 178 KAHENKNDLVIIDTAGRLAIDENLVVELENIKKIAK------PDEILFVADALSGQDIIN 231

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + FH     TG I+TK+D  ARGG  + I     +P+ F+G GE +++L+ F     +
Sbjct: 232 VAQTFHDRLKLTGSIITKLDSDARGGAALSIRQVLNLPIRFIGTGEKVSNLDLFYPDRMA 291

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 292 DRILGMGD 299


>gi|198432537|ref|XP_002131641.1| PREDICTED: similar to signal recognition particle 54 [Ciona
           intestinalis]
          Length = 497

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V +    E+   L+ SD+ + + +K+ E + +    
Sbjct: 3   LADLGRKINNALRSLSNATIINEEVLQSMLSEICRALLESDVNIRLVKKLRENVRSAIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ ++++   V   + K++ P  K +      +P+VI+ VG+ G GKTT   KL
Sbjct: 63  DEMASGLNKRKMIQSAVFRELVKLVDPGVKAWQ-PTKGKPNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQLK  A +    F  S   +D   +A E  +  + 
Sbjct: 122 AYYYQRKNWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEADPVVIASEGVETFKE 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L+  +  AP +V+ V+DA+ GQ    Q   
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEM------LQVYNAVAPDNVIFVMDASIGQACEGQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D E F  + F   + 
Sbjct: 236 FKEKVDVASVIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEMFKTQPFVRKLL 295

Query: 312 GCLD 315
              D
Sbjct: 296 NMGD 299


>gi|289740969|gb|ADD19232.1| signal recognition particle subunit srp54 [Glossina morsitans
           morsitans]
          Length = 508

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++     + +E+   L+ +D+ + + +++ E +      
Sbjct: 3   LADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      + +VI+ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELIKLVDPGVKPYQ-PVKGKANVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D   +A E  +  + 
Sbjct: 122 AYHYQKRNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEIDPVVIAQEGVEMFKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +  +   +       P +++ V+DAT GQ    Q + 
Sbjct: 182 EGFEMIIVDTSGRHKQEESLFEEMLAVANAIN------PDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D+EPF  K F + + 
Sbjct: 236 FKGKVDIGSVIITKLDGHAKGGGALSAVAATRSPIIFIGTGEHIDDMEPFKIKPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|83592520|ref|YP_426272.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575434|gb|ABC21985.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Rhodospirillum rubrum ATCC 11170]
          Length = 504

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 90/314 (28%), Positives = 158/314 (50%), Gaps = 25/314 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S +L + +  +     L +   +    E+   L+ +D+ +AV ++ V ++  +   
Sbjct: 2   FDGLSGRLGDVLDKLRRRGSLSEADVDAAMREVRVALLEADVALAVVKQFVAQVKEQAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSK--------PFNWDFSHRPHV-ILVVGVNGV 122
           ++V       Q V+  V + +  ML                 D +H P V IL+VG+ G 
Sbjct: 62  QEVIRSVTPGQMVVKLVHDALVDMLSGEGGVEAEPDPMSLGIDIAHTPPVPILMVGLQGS 121

Query: 123 GKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           GKTT   K++ ++      KV++A+ D +R AA  QL I  ++T  D +   +G     +
Sbjct: 122 GKTTTSAKIALRITKRERKKVLMASLDVYRPAAQRQLAILGEQTGVDTLEVVMGQKPVEI 181

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A  A + A+    DV+I+DTAGRLH + +LM  + ++  ++       PH VL V DA T
Sbjct: 182 ARRAMQAARVGGYDVVILDTAGRLHIDEVLMTEVAEVRALVN------PHEVLLVTDAMT 235

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+A+   + F+   G TG+++T++DG +RGG  + +     +P+  +G+GE ++ LE F
Sbjct: 236 GQDAVNVAQEFNEKVGVTGIVLTRVDGDSRGGAALSMRAVTGVPIKLMGMGEKMDALEAF 295

Query: 302 VAKDFSAVITGCLD 315
            A+  +  I G  D
Sbjct: 296 HAQRIAGRILGMGD 309


>gi|282881745|ref|ZP_06290408.1| signal recognition particle protein [Prevotella timonensis CRIS
           5C-B1]
 gi|281304504|gb|EFA96601.1| signal recognition particle protein [Prevotella timonensis CRIS
           5C-B1]
          Length = 444

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 148/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   +++  K   
Sbjct: 2   FENLSERLERSFKILKGEGKISEINVAETLKDVRRALLDADVNYKVAKNFTDKVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + + +++   +     D   +P +IL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIVHDELAELMGGEAVGLQLD--SKPAIILMSGLQGSGKTTFTGKL 119

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +        +L A D +R AAI+QLK+  ++   +        D  A+A +A +QA+
Sbjct: 120 ANMLKTKQKKNPLLVACDVYRPAAIEQLKVVGEQVGVEVYSELDNKDVVAIAQQAIQQAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I ++   +       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGNDVVIVDTAGRLAVDEEMMNEISQLKNAIH------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE ++ ++ F     +  I
Sbjct: 234 EFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFVGTGEKMDAIDVFHPDRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|302896050|ref|XP_003046905.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256727833|gb|EEU41192.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 518

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 10/301 (3%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
                 ++   + ++   + LD+    E+   L+ +D+ V +  ++ + + T    K++ 
Sbjct: 3   LQDLGRRINAAVNNLTREQNLDEKAGPEICAALLEADVNVRLVGQLRKSIRTTVNFKELP 62

Query: 81  VQRVLYDV-SELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMS 136
                  +  + +   L+ L  P    F  +     VI+ VG+ G GKTT   KL++   
Sbjct: 63  PAVNKKRLIQKAVFDELVKLVDPHADSFRPKKGKSSVIMFVGLQGAGKTTTCTKLARHYQ 122

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             G K  L   DTFR+ A DQLK  A +    +  S   +D A +A    +Q +  + +V
Sbjct: 123 SRGFKSCLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVARAGVEQFKKDRFEV 182

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +I+DT+GR    S L   +  +   ++      P   + VLDA+ GQ A  Q + F   A
Sbjct: 183 IIVDTSGRHRQESALFQEMIDIQNAIQ------PDETIMVLDASIGQQAESQAKAFKEAA 236

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
               +I+TK DG A GGG I  V     P+ F+G GE + DLE F  + F   + G  D 
Sbjct: 237 DFGAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDLEKFAPQQFVQKLLGMGDM 296

Query: 317 G 317
            
Sbjct: 297 A 297


>gi|310800676|gb|EFQ35569.1| signal recognition particle protein SRP54 [Glomerella graminicola
           M1.001]
          Length = 526

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 142/306 (46%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   ++++     LD    DG+ +E+   L+ +D+ V +  ++ + + +    
Sbjct: 3   LQDLGRRINTAVSNLTREPNLDEKAFDGMLKEICAALLEADVNVRLVGQLRKSIKSTVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K++        + +      + K++ P ++PF      + ++++ VG+ G GKTT   KL
Sbjct: 63  KELPPAVNKKRLIQKAVFDELVKLVDPHAEPFKPK-KGKSNIVMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + 
Sbjct: 122 ARHYQARGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVAKEGVDKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K +++I+DT+GR      L   +  +   +       P   + VLDA+ GQ A  Q + 
Sbjct: 182 EKFEIIIVDTSGRHRQEEALFQEMVDIQTAI------RPDETIMVLDASIGQQAESQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK DG A GGG I  V     P+ F+G GE + D E F  + F + + 
Sbjct: 236 FKEAADFGAIIITKTDGHASGGGAISAVAATHTPIVFIGTGEHMLDFERFAPQQFVSKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|94495531|ref|ZP_01302111.1| signal recognition particle protein [Sphingomonas sp. SKA58]
 gi|94424919|gb|EAT09940.1| signal recognition particle protein [Sphingomonas sp. SKA58]
          Length = 491

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   L+ +D+ + V ++ V++   +   
Sbjct: 2   FDSLSDRLGGVFDKLRGRGALTEDDVRAAMREVRIALLEADVALPVVRQFVDQATERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q V+  VS+ + + L   +     D +  P VI++VG+ G GKTT   K+
Sbjct: 62  SDVLRSVTPGQMVVKIVSDTLTETLGSDTSDLMIDVT-PPAVIMMVGLQGSGKTTSTAKI 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++ +   K + +A+ D  R AA +QL +   +T    +    G     +A  A + A+
Sbjct: 121 AKRLKEKERKKVLMASLDVQRPAAQEQLAVLGTQTDVATLPIIAGQQPVDIARRALQAAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+++DTAGRLH +  LM  +  +       D   P  +L V+D+ TGQ+A+    
Sbjct: 181 LQGFDVVMLDTAGRLHVDQALMDEMKAV------ADVATPAEILLVVDSLTGQDAVNVAT 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A    TG+++T+MDG ARGG  + +      P+ F G GE ++ +E F  +  +  I
Sbjct: 235 SFTAQVPLTGVVLTRMDGDARGGAALSMRAVTGRPIKFAGTGEKLDAIELFHPQRVAQRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|320528387|ref|ZP_08029549.1| signal recognition particle-docking protein FtsY [Solobacterium
           moorei F0204]
 gi|320131301|gb|EFW23869.1| signal recognition particle-docking protein FtsY [Solobacterium
           moorei F0204]
          Length = 323

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 107/316 (33%), Positives = 162/316 (51%), Gaps = 17/316 (5%)

Query: 11  LSWIRKLTK-------------GFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRS 56
           +S++ KL +             GF  +     + +  +    + +DD   E+L  +L+ S
Sbjct: 1   MSFLDKLKEAFSKKDDKATYLSGFKKSKQTFGDQLNQMQYKYKGVDDDFLEQLTIILLES 60

Query: 57  DIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPL-SKPFNWDFSHRPHVI 114
           D+G+  A  I E++  K      ++ +  +  + E + ++      KP +++  +   V 
Sbjct: 61  DVGIETADYICEQMKLKCSEYPSITFKWAMNFLLETMKEIYEATPDKPISFN-ENGTTVF 119

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+ GVNG GKTT   KL++   D G  V   A DTFR+ AIDQL  W +R     +    
Sbjct: 120 LLEGVNGSGKTTTSAKLARMFLDQGKSVAFTAADTFRAGAIDQLAKWGERLGVPCIKGIE 179

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D +A   +  + A    +D+L+ DTAGRL N + LM  + KM RV  +  P APH+  
Sbjct: 180 NGDPSAAIVDGCRYAIENNIDILLCDTAGRLQNKANLMNELSKMNRVAAKEIPGAPHNTW 239

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDATTGQN L Q ++F      +G+I+TKMDGTA+GG +I I     IPVY+LG+GE 
Sbjct: 240 LVLDATTGQNGLSQAQIFAEATNLSGIILTKMDGTAKGGIVIAIKHKLHIPVYYLGLGEQ 299

Query: 295 INDLEPFVAKDFSAVI 310
             DL PF    +   I
Sbjct: 300 PKDLRPFDLDAYLYSI 315


>gi|308080100|ref|NP_001183903.1| hypothetical protein LOC100502496 [Zea mays]
 gi|238015356|gb|ACR38713.1| unknown [Zea mays]
          Length = 494

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 143/305 (46%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A     +   +  + ++  +D+ V      E+   L+++D+   + + +   +      
Sbjct: 3   LAQLGGSISRALAQMSNATVIDEKVLNDCLNEISRALLQADVQFKMVRDMQANIKRIVNL 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A   + +R++   V   +  ML P  KP       +P V++ VG+ G GKTT   K 
Sbjct: 63  EALAAGTNKRRIMQQAVFTELCNMLDP-GKPSFTPKKGKPSVVMFVGLQGSGKTTTCSKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + 
Sbjct: 122 AYYHQKKGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE I+D E F  K F + + 
Sbjct: 236 FKQSVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHIDDFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|56751641|ref|YP_172342.1| signal recognition particle subunit SRP54 [Synechococcus elongatus
           PCC 6301]
 gi|81301281|ref|YP_401489.1| signal recognition particle-docking protein FtsY [Synechococcus
           elongatus PCC 7942]
 gi|56686600|dbj|BAD79822.1| signal recognition particle subunit SRP54 [Synechococcus elongatus
           PCC 6301]
 gi|81170162|gb|ABB58502.1| signal recognition particle-docking protein FtsY [Synechococcus
           elongatus PCC 7942]
          Length = 518

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 107/314 (34%), Positives = 176/314 (56%), Gaps = 5/314 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            ++++ E + W+  L +G   T   L   +   +    L     E +E LL+++D+GV  
Sbjct: 203 PEEISIEEIDWLSSLRRGLDKTRRSLVNQLKSAVGQGPLSADAVETIEALLLQADVGVEA 262

Query: 63  AQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             +I+     +L  +    + ++  +   + +L+ + L    +        R +V LV G
Sbjct: 263 TDRILTQLQAKLRQEALPPEQAIAYLKQLLQQLLDQPLETSGRYILAPEKGRLNVWLVCG 322

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNGVGKTT IGKL+   + +G + ++AA DTFR+AA++Q+K+W DR+  D + +    +D
Sbjct: 323 VNGVGKTTTIGKLAHLATKSGYRCLIAAADTFRAAAVEQVKVWGDRSEVDVIANPGQNTD 382

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ ++A   AQA+  ++L++DTAGRL N   LM  + K+ R++ R  P A    L VL
Sbjct: 383 PAAVVFDAIAAAQARGTELLLVDTAGRLQNKKNLMDELAKVRRIIDRKAPDAIVESLLVL 442

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DAT GQN LRQ ++F   A  +G+ +TK+D TA+GG  + I    ++P+ FLG GE I D
Sbjct: 443 DATQGQNGLRQAQVFAEAAQLSGVALTKLDSTAKGGVALAIAQDLQLPIRFLGAGERIQD 502

Query: 298 LEPFVAKDFSAVIT 311
           L PF + +F   + 
Sbjct: 503 LRPFSSYEFIQALL 516


>gi|313813546|gb|EFS51260.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL025PA1]
 gi|327334312|gb|EGE76026.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL097PA1]
          Length = 396

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 113/293 (38%), Positives = 180/293 (61%), Gaps = 5/293 (1%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           +++  L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S  
Sbjct: 100 NSNNALARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDP 159

Query: 83  RVLYDV--SELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
               +V   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G
Sbjct: 160 AHAREVLHHELVELVGSDMDRSINLDRLEGKPAVVLIVGVNGTGKTTTCGKLARVLVAEG 219

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +    + VDV+++
Sbjct: 220 KTVLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDEGVDVVLV 279

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   T
Sbjct: 280 DTAGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQARVFSEVVDVT 337

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G++++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   + G
Sbjct: 338 GIVLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNFVTGLMG 390


>gi|325971130|ref|YP_004247321.1| signal recognition particle protein [Spirochaeta sp. Buddy]
 gi|324026368|gb|ADY13127.1| signal recognition particle protein [Spirochaeta sp. Buddy]
          Length = 444

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S K    +  +    ++ +       EE++  L+ +D+ + V ++ +   + +   
Sbjct: 2   FDSISDKFSGIMRTLAGKSKITEKNIQDAVEEIKVALLDADVNLRVVRRFINGTMEEALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           + V       Q+ +  V + +  +L    ++           VIL++G+ G GKTT   K
Sbjct: 62  EKVLKAVDPGQQFVKIVYDRMVALLGDEENQKLLLKGPDTTSVILMMGLQGSGKTTTSAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++   G + ML A D  R AAI QL++  +         +   D + +A  A  QA+
Sbjct: 122 LAARLKREGRRPMLVAADLVRPAAILQLQVLGESVGVPVFSIQGEKDPSKVAKAALAQAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             + D+LI+DT+GR+H +  LM  I ++   +K      P   L V D+ TGQNA+   +
Sbjct: 182 KDQRDILIVDTSGRMHLDQTLMDEIQRVRDAIK------PDETLFVADSMTGQNAVAIAQ 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G++++K D   RGG  + +      P+ F+GVGE ++DLEPF  +  ++ I
Sbjct: 236 EFEQKVGISGVVLSKFDSDTRGGAALSLRSVVGKPIKFIGVGEKMDDLEPFYPERIASRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|30580515|sp|Q8MZJ6|SRP54_GEOCY RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|20750404|gb|AAM23234.1| signal recognition particle 54 kD protein [Geodia cydonium]
          Length = 499

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 142/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGI----TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +      +I+   L   + +E+   L+ +D+ V +  K+ + +      
Sbjct: 3   LADLGRKITTALLPRQRTVINEEVL-QAMLKEICTALLEADVNVKLVGKLRQNVRAAIDF 61

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +     +S +R++   V   + K+L P   P         +VI+ VG+ G GKTT   KL
Sbjct: 62  EDMGAGLSKRRIIQTSVFNELCKLLDPGV-PVWHPTKGHSNVIMFVGLQGSGKTTTCTKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 121 AYHYQKKGWKTCLVCADTFRAGAFDQLKQNATKARVPFYGSYTEMDPVVIAQEGVEKFKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +V+I+DT+GR      L      M++V + +DP    +++ V+D T GQ    Q   
Sbjct: 181 DSFEVIIVDTSGRHKQEESLFEE---MLQVSQAIDP---DNIIFVMDGTIGQACESQARA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+++EPF  K F + + 
Sbjct: 235 FKEKVDVASVIVTKLDGHAKGGGALSAVAATRSPIIFIGTGEHIDEMEPFKTKPFVSKLL 294

Query: 312 GCLDY 316
           G  D 
Sbjct: 295 GMGDL 299


>gi|171464208|ref|YP_001798321.1| signal recognition particle-docking protein FtsY [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193746|gb|ACB44707.1| signal recognition particle-docking protein FtsY [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 296

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 122/289 (42%), Positives = 170/289 (58%), Gaps = 10/289 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY- 86
           L++ +  +  S ++D    + LE+ LI+SD+G+   ++++ +L     ++  S    L  
Sbjct: 4   LRKTLGSLFKSTKIDQSWFDTLEESLIQSDVGLPTTEQLISKLRKAAKSEKASSPEALQA 63

Query: 87  ----DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
               +VS L+  +    +  F  D  + P V LVVGVNG GKTT IGKL +     G  V
Sbjct: 64  LLIQEVSSLLTTIEPSPNPLFTKDKPNTPEVWLVVGVNGAGKTTTIGKLCRLFQSQGKSV 123

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +LAAGDTFR+AA +QL+ W  R   D +  E G DAAA+A++A   A ++K D+LIIDTA
Sbjct: 124 LLAAGDTFRAAARNQLQEWGGRNQVDVITQE-GGDAAAVAHDAIHAAISRKNDILIIDTA 182

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL     LM  + K+ RV+ +  P APH  L VLD  TGQN L QV+ FHA  G TG+I
Sbjct: 183 GRLATQDHLMEELKKVKRVIDKALPGAPHHTLLVLDGNTGQNGLSQVKAFHAALGLTGII 242

Query: 263 MTKMDGTARGGGLIPIVVTHK---IP-VYFLGVGEGINDLEPFVAKDFS 307
           +TK+DGTA+GG +  +  T +    P V  LG GEGI DL PF A  +S
Sbjct: 243 VTKLDGTAKGGVICALAHTLQEGPKPAVLALGKGEGIEDLAPFTAGQYS 291


>gi|194476881|ref|YP_002049060.1| signal recognition particle-docking protein FtsY [Paulinella
           chromatophora]
 gi|171191888|gb|ACB42850.1| signal recognition particle-docking protein FtsY [Paulinella
           chromatophora]
          Length = 439

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 108/316 (34%), Positives = 179/316 (56%), Gaps = 5/316 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +++ +V  + + W+ +L +G   T   L   + +I+    L   V E+LE LL+++D+G+
Sbjct: 121 LNSNQVTLDEIDWLTRLRQGLKKTRQGLVTQLLEILGDDPLTPEVVEDLETLLLQADVGI 180

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILV 116
               +++  +  +   + +     L  + + + K+L        K        R +V L+
Sbjct: 181 DATDQVLTVIRQRMNEEVLDPAEGLLLLKDQLRKILEDPIIASGKMLLAPDRERLNVWLL 240

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IG 175
           VGVNGVGKTT IGKL+     +G   ++AA DTFR+AA++Q+K+W +R++   + +  I 
Sbjct: 241 VGVNGVGKTTTIGKLANLAVRSGYTALIAAADTFRAAAVEQVKVWGNRSNVPIIANPSIN 300

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++ ++A   A+AK  +++++DTAGRL     LM  + K+ R++ RL P A    L 
Sbjct: 301 ADPASVVFDALNAAKAKGTNLVLVDTAGRLQTKHNLMEELSKVRRIIDRLAPEANVESLL 360

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDAT GQN  RQ   F   A  TG+I+TK+DG++RGG  +      K+P+ F+GVGEGI
Sbjct: 361 VLDATQGQNGFRQAIGFAKTAALTGIILTKLDGSSRGGMALAAASEVKLPIRFIGVGEGI 420

Query: 296 NDLEPFVAKDFSAVIT 311
            DL PF +  F   + 
Sbjct: 421 RDLHPFNSFTFVEALL 436


>gi|294101553|ref|YP_003553411.1| signal recognition particle protein [Aminobacterium colombiense DSM
           12261]
 gi|293616533|gb|ADE56687.1| signal recognition particle protein [Aminobacterium colombiense DSM
           12261]
          Length = 449

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L+     +    +L +        E+   L+ +D+   V + +V+ +  +   
Sbjct: 2   FEALKERLESVFNTLKGKGKLSEEDVNAALREVRRALLEADVDYKVVKSLVDSIRGRCIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V E +  ++     PF    S  P + ++VG+ G GKTT   K+
Sbjct: 62  QEVLDSITPGQQVVAIVYEELVSLMGEDVVPFIIS-SKPPTLCMMVGLQGSGKTTSAVKI 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQ 190
           +K++       ++ A D  R AAI+QLK+ A ++   F   S    D   +A EA   A+
Sbjct: 121 AKRIQ-NAHNPLVVACDLRRPAAIEQLKVLAQQSKVAFYGPSGGTQDVIKVAKEALAYAE 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I DTAGRLH +  LM  + ++  ++       PH +L V+DA TGQ A++   
Sbjct: 180 DHLNDVIIFDTAGRLHVDEDLMEELSRLKDLVN------PHEILLVVDAMTGQEAVKVAT 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG++++K+DG ARGG  + I  T ++P+ F GVGEGI+ +E F AK  +  I
Sbjct: 234 SFHEKLSLTGVVLSKLDGDARGGAALAIRATTQVPIKFAGVGEGIDAIELFDAKRMAQRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 IGMGD 298


>gi|94985540|ref|YP_604904.1| signal recognition particle protein [Deinococcus geothermalis DSM
           11300]
 gi|94555821|gb|ABF45735.1| signal recognition particle GTPase [Deinococcus geothermalis DSM
           11300]
          Length = 450

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 139/304 (45%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL++ +  I    +L D        E+   L+ +D+   VA+  V ++  K   
Sbjct: 2   FEALGNKLQDILDRIGRESKLTDAQVKAAMREIRMALLEADVNFNVAKDFVAKVSEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V     + Q V+  V + + + L   ++          +V  +VG+ G GKTT  GKL
Sbjct: 62  QEVVGSLTAGQTVVKLVHDELIETLGGEARQPTLKNDG--NVWFMVGLQGAGKTTSAGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G +V+L A DT R AA DQL++ A +     +  + G           +  + 
Sbjct: 120 AAFYKSKGRRVLLVAADTQRPAARDQLEVLAKQVGVPVLKVKDGETPQETKRRLDEYLKT 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRL  +  LM  +  +   L+      P   L V+DA TGQ AL    +
Sbjct: 180 DYRDLVIVDTAGRLQIDEALMDQLAALQAELQ------PTETLLVVDAMTGQEALNVARV 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      +GLI+TKMDG ARGG  +        P+YF GV E +  LEPF     +  I 
Sbjct: 234 FDERVHLSGLIITKMDGDARGGAALSARSVTGKPIYFAGVSEKLTGLEPFYPDRVAGRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|293374743|ref|ZP_06621051.1| signal recognition particle-docking protein FtsY [Turicibacter
           sanguinis PC909]
 gi|325837606|ref|ZP_08166453.1| signal recognition particle-docking protein FtsY [Turicibacter sp.
           HGF1]
 gi|292646657|gb|EFF64659.1| signal recognition particle-docking protein FtsY [Turicibacter
           sanguinis PC909]
 gi|325490908|gb|EGC93207.1| signal recognition particle-docking protein FtsY [Turicibacter sp.
           HGF1]
          Length = 335

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 177/311 (56%), Gaps = 4/311 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           +  ++V+   +   +   +G   T   L + +  + SS   +++ + EELE++ I +DIG
Sbjct: 12  LGKKEVSETEIRAQQHYKEGMKKTRGNLLKQLQSVFSSYNDINEEMFEELEEIFIMADIG 71

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSH-RPHVILV 116
           V      +++L       +V+  + L    V +L    +       N   +     VIL 
Sbjct: 72  VNTVVDFIDQLKETVREHNVTDPKELQRIMVDKLFEIYVKGEFVNSNLRLNKEGLTVILF 131

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT I K++ ++   G  V+LAAGDTFR+ AI+QL++W DR   D V    GS
Sbjct: 132 VGVNGVGKTTSIAKIAHQLKGKGKSVLLAAGDTFRAGAIEQLQVWGDRIGVDVVSLSEGS 191

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D +A+ ++A K+A+A+ VDVL+ DTAGRL N   LM  + K+ RV++R  P APH  L V
Sbjct: 192 DPSAVMFDAIKEAKARNVDVLLCDTAGRLQNKVNLMKELEKIKRVIEREVPGAPHDTLLV 251

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DATTGQN + Q + F      +G+++TK+DGTA+GG ++ I     IP+ F+G+GE   
Sbjct: 252 IDATTGQNGMNQAKAFLEATDVSGIVLTKLDGTAKGGIVLAIRNEIGIPIKFVGLGEKAE 311

Query: 297 DLEPFVAKDFS 307
           DL  F  + + 
Sbjct: 312 DLVHFDIEQYI 322


>gi|89891049|ref|ZP_01202557.1| Signal recognition protein [Flavobacteria bacterium BBFL7]
 gi|89516693|gb|EAS19352.1| Signal recognition protein [Flavobacteria bacterium BBFL7]
          Length = 442

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 137/305 (44%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + KL + +  +     + +       +E+   L+ +D+   +A++       K   
Sbjct: 2   FDNLTDKLDKAMHVLKGHGSITEVNVADTLKEIRRALVDADVNYKIAKEFTSRAKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q +   V + + +++       N   +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  QGVLTTLKPGQLLTKIVKDELTELMGGDVTGLNL--TGNPTVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      + +L A D +R AAIDQL +  +    +   +    D   ++  A   A+
Sbjct: 120 ANFLKTKKSKRPLLVACDIYRPAAIDQLHVVGESVGVEVFSNRDEKDPVKISEAAIAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+IIDTAGRL  +  +M  I  +   +K      P   L V+D+ TGQ+A+   +
Sbjct: 180 QNGFNVVIIDTAGRLAVDEEMMTEIANVHAAVK------PQETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+I+TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 AFNERLNFDGVILTKLDGDTRGGAALSIKSVVDKPIKFIGTGEKMEAIDVFYPSRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|320583360|gb|EFW97575.1| Signal recognition particle protein [Pichia angusta DL-1]
          Length = 530

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 146/303 (48%), Gaps = 14/303 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    ++   ++++  +  +D    DG+ +E+ + LI +D+ V +   + ++L +    
Sbjct: 3   LADLGKRINSAVSEVTKANVVDQTAVDGLLKEISNALIEADVNVKLVLNLRKKLKSTIEQ 62

Query: 77  KDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           ++         + + +   L  L              + +VI+ VG+ G GKTT   KL+
Sbjct: 63  EEKPGVNKKKLIQKAVFDELCDLVDCKETELYKPKKKKTNVIMFVGLQGAGKTTTCTKLA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G KV +   DTFR+ A DQLK  A +    +  S   +D   +A +  ++ + +
Sbjct: 123 VYYQRRGFKVGMVCADTFRAGAFDQLKQNATKAKIPYYGSYTEADPVKVASDGVEKFKKE 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K +++I+DT+GR    S L A + ++   ++      P+  + VLDA+ GQ A  Q   F
Sbjct: 183 KFEIIIVDTSGRHRQESELFAEMIQIGEAVQ------PNQTIMVLDASIGQAAESQSRAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              +    +I+TKMDG A+GGG I  V     P+ F+G GE INDLE F  + F + + G
Sbjct: 237 KESSNFGAIILTKMDGHAKGGGAISAVAATHTPIAFIGTGEHINDLESFTPRQFVSKLLG 296

Query: 313 CLD 315
             D
Sbjct: 297 IGD 299


>gi|89890440|ref|ZP_01201950.1| cell division protein, signal recognition particle (docking
           protein) FtsY [Flavobacteria bacterium BBFL7]
 gi|89517355|gb|EAS20012.1| cell division protein, signal recognition particle (docking
           protein) FtsY [Flavobacteria bacterium BBFL7]
          Length = 317

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 189/313 (60%), Gaps = 15/313 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S+ +K         L KG   T     + +   +    ++D  V ++LED+LI SD+GV
Sbjct: 1   MSFFKKIFSKEKKETLDKGLEKTKTTFFDKLGKAVAGKSKVDADVLDDLEDVLISSDVGV 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVIL 115
           A   K+++ +  +    K +    +   + + I  +L  ++      F       P+V++
Sbjct: 61  ATTIKVIDRIEDRVAKDKYLGTTELNGILRDEIAGLLSEVNNGDATDFTIPKQEGPYVVM 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT IGKL+ +    GLKV+L AGDTFR+AA+DQL+IWADR   + V  ++G
Sbjct: 121 VVGVNGVGKTTTIGKLAHQFKQKGLKVVLGAGDTFRAAAVDQLQIWADRVGVEIVKQDMG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++A++  + A A+  DV+++DTAGRLHN   LM  + K+ RV++++ P APH V+ 
Sbjct: 181 SDPASVAFDTLQSAVAQNADVVLLDTAGRLHNKVNLMNELTKVKRVMQKIIPDAPHDVML 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNA  Q + F A    + L +TK+DGTA+GG +I I    +IPV ++GVGEG+
Sbjct: 241 VLDGSTGQNAFEQAKQFTAATEVSSLAVTKLDGTAKGGVVIGISDQFQIPVRYIGVGEGM 300

Query: 296 NDLEPFVAKDFSA 308
           +DL+ F   +F  
Sbjct: 301 DDLQVFNKTEFVD 313


>gi|297243129|ref|ZP_06927067.1| signal recognition particle GTPase [Gardnerella vaginalis AMD]
 gi|296889340|gb|EFH28074.1| signal recognition particle GTPase [Gardnerella vaginalis AMD]
          Length = 393

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 120/321 (37%), Positives = 187/321 (58%), Gaps = 12/321 (3%)

Query: 1   MSNQKVASESL-----SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR 55
           M N++V SE L     S I++L +  A ++      + +IIS   L +   E++ED L+ 
Sbjct: 74  MPNEEVKSELLPESTSSRIKRLRERLAHSANPFGRALFNIISKDHLSEEDWEDVEDTLLM 133

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFS--HRP 111
           +D+G   ++++VE+L         S    ++    ++L+  +     +  N D S  H P
Sbjct: 134 ADVGSRASEELVEDLRKDARIAGTSSSEDVHSALRTKLLKIVDEDADRRLNADKSDAHHP 193

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV- 170
            VI++VGVNG GKTT  GKL++        VM AA DTFR+AA DQL+ WA   S   V 
Sbjct: 194 SVIMMVGVNGTGKTTTAGKLARLFIAQKRSVMFAAADTFRAAAADQLETWASAVSVPVVR 253

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G+D A++A+ A  +A+ ++ D+LI+DTAGRL N + LM  +GK+ RV+++  P   
Sbjct: 254 ADKDGADPASVAFIAANKAKEEQTDLLIVDTAGRLQNKANLMEELGKIRRVIEKTMP--V 311

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             VL VLDATTGQN + Q ++F    G TG+++TK+DG+A+GG +I +     +PV  +G
Sbjct: 312 DEVLLVLDATTGQNGMSQAKVFAEAIGITGVVLTKLDGSAKGGIVIAVQRELGVPVKLVG 371

Query: 291 VGEGINDLEPFVAKDFSAVIT 311
           +GEG +DL PF A+ F   + 
Sbjct: 372 LGEGPDDLVPFDAQSFVDGLL 392


>gi|1711512|sp|P49972|SR542_SOLLC RecName: Full=Signal recognition particle 54 kDa protein 2;
           Short=SRP54
 gi|556902|emb|CAA84288.1| 54-kD signal recognition particle (SRP) specific protein [Solanum
           lycopersicum]
          Length = 499

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   +  + ++  +D+ V  E    +   L+++D+   + + +   +      
Sbjct: 3   LAELGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            D++       + +      + K+L P  KP       +P +++ VG+ G GKTT   K 
Sbjct: 63  DDLAAGHNKRRIIQQAVFNELCKILDP-GKPSFTPKKGKPSIVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S   SD   +A +  +  + 
Sbjct: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEAALFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F  K F + + 
Sbjct: 236 FKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|18978138|ref|NP_579495.1| signal recognition particle receptor [Pyrococcus furiosus DSM 3638]
 gi|18893939|gb|AAL81890.1| signal recognition particle receptor (dpa) [Pyrococcus furiosus DSM
           3638]
          Length = 322

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 96/285 (33%), Positives = 150/285 (52%), Gaps = 15/285 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHK 94
           I  + +D    +ELE  L+ +D+ + V   + E++  K   K V +       + E + +
Sbjct: 41  IKEKDVDKA-LDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKE 99

Query: 95  MLMPLSKPF-------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
            +  + +             + +P+VI+ VG NG GKTT I KL+  + + G  V++AA 
Sbjct: 100 AVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 159

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+ AI+QL+  A R     +    G+D AA+AY+A + A+A+ +DV++IDTAGR   
Sbjct: 160 DTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSET 219

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           N  LM  + K+ RV K      P+ V+ V DA  G   + Q   F+      G+I+TK+D
Sbjct: 220 NRNLMDEMKKIARVTK------PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLD 273

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             ARGG  + I      P+ F+GVG+G +DL PF  + F   I G
Sbjct: 274 ADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFG 318


>gi|229815431|ref|ZP_04445763.1| hypothetical protein COLINT_02479 [Collinsella intestinalis DSM
           13280]
 gi|229808964|gb|EEP44734.1| hypothetical protein COLINT_02479 [Collinsella intestinalis DSM
           13280]
          Length = 304

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 164/309 (53%), Gaps = 12/309 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +     L +G   +   L E          +D+G  E+LED L+  D+G  +A ++ ++L
Sbjct: 1   MGLFDSLKRGLERSREALNEVFY---FGGEVDEGFWEDLEDTLVMGDMGGEIAMRVTDDL 57

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIG 129
                 K++     L      + + L         D F   P  +L VG+NG GKTT +G
Sbjct: 58  RETAARKNLKTADQLRGA---LAERLCEFFVESESDIFDDTPSCVLFVGINGAGKTTTVG 114

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++   + AG  V++ + DTFR+AAI+QL +W +R     +  + GSD A++ Y+   QA
Sbjct: 115 KIASAEAGAGKNVVIGSADTFRAAAIEQLDVWGERAGVPVIKRDRGSDPASVCYDVLDQA 174

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-----PHSVLQVLDATTGQN 244
                D+++IDTAGRLH++  LM  + K+++V ++          P  V+ V+D+ TGQN
Sbjct: 175 DKLASDLVLIDTAGRLHSSPELMRELAKVVKVTRKRAESCAAGPMPVHVVLVIDSATGQN 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q + F+   G  G+IMTK+DGTA+GG  + +    K+P+Y +GVGE + DL+ F A 
Sbjct: 235 GLAQAQEFNEALGLDGIIMTKLDGTAKGGIALAVAEQLKLPIYRIGVGEQVEDLQRFDAS 294

Query: 305 DFSAVITGC 313
            F   + G 
Sbjct: 295 SFCRALVGL 303


>gi|289423971|ref|ZP_06425763.1| signal recognition particle-docking protein FtsY
           [Peptostreptococcus anaerobius 653-L]
 gi|289155607|gb|EFD04280.1| signal recognition particle-docking protein FtsY
           [Peptostreptococcus anaerobius 653-L]
          Length = 364

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 126/305 (41%), Positives = 189/305 (61%), Gaps = 4/305 (1%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
                 +L +G + T   +   + DI++S  ++D+ + EELE++LI +D+G+     I++
Sbjct: 62  KKGLFARLMEGLSKTKSNIMGRVDDILNSYTKIDEDLLEELEEVLITADVGLTTTMDIID 121

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +L      + V+    + D + E+I  +L   +     D S  P VI++VGVNGVGKTT 
Sbjct: 122 QLRVMIKKRGVTDPLEVRDLLKEIISNILTEGNPKIEIDPS--PAVIVMVGVNGVGKTTT 179

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL++K    G KVMLAA DTFR+AA +QL IWA R   D +    G+D  A+ ++A K
Sbjct: 180 IGKLAQKYKKDGKKVMLAAADTFRAAATEQLDIWATRVGVDIIKHHEGADPGAVIFDAIK 239

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            +Q++KVD+LI DTAGRLHN + LM  +GK+ +++ R  P A   VL V+DATTGQNA+ 
Sbjct: 240 ASQSRKVDLLICDTAGRLHNKANLMNELGKIFKIIDREYPEAKKEVLLVVDATTGQNAVS 299

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F  VA  TG+++TK+DGTA+GG ++ +     +PV  +GVGE   DL+ F A+ F+
Sbjct: 300 QAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGEKAEDLQVFDAQSFT 359

Query: 308 AVITG 312
             I G
Sbjct: 360 DAIFG 364


>gi|197103583|ref|YP_002128960.1| signal recognition particle protein [Phenylobacterium zucineum
           HLK1]
 gi|196477003|gb|ACG76531.1| signal recognition particle protein [Phenylobacterium zucineum
           HLK1]
          Length = 508

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 156/311 (50%), Gaps = 15/311 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +     L+    S   +L      ++S + +D+ +RE +   L+ +D+ + V ++ +++ 
Sbjct: 1   MHLFDALSDRLTSVFDRLSG--RGVLSEKDIDEAMRE-VRVALLEADVALPVVRQFIDKA 57

Query: 71  LTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGK 124
             +   + V        +V+    + + +ML    +P     S + P VIL+ G+ G GK
Sbjct: 58  KERATGEAVIRSVKPADQVIKITYDGLVEMLGGDGEPEGLRLSANPPTVILMSGLQGSGK 117

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL+ ++S    KV+LA+ DT R AA++QL + A +   D +    G  A  +   
Sbjct: 118 TTTAGKLALRLSKERKKVLLASLDTRRPAAMEQLAMLATQAGVDSLPIVPGQSAPDITRR 177

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A+ +  DVLI+DTAGR   +  +M+   ++ ++        P   L V DA TGQ+
Sbjct: 178 ALQAARLQGYDVLILDTAGRTTLDEAMMSEAAEIAKISN------PSETLLVADALTGQD 231

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+R  + FH     TGL++T+ DG  RGG  + +     +P+ FLGV E I+ L+ F A 
Sbjct: 232 AVRTAKAFHERLPLTGLVLTRADGDGRGGAALSMRAVTGLPIKFLGVSEKIDGLDAFDAH 291

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 292 RVAGRILGRGD 302


>gi|167648842|ref|YP_001686505.1| signal recognition particle protein [Caulobacter sp. K31]
 gi|167351272|gb|ABZ74007.1| signal recognition particle protein [Caulobacter sp. K31]
          Length = 511

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 150/309 (48%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L++  +    +L      ++S + +D+ +RE +   L+ +D+ + V +  + +   
Sbjct: 1   MFDGLSERLSGVFDRLGG--RGVLSEKDIDEALRE-VRVALLEADVALPVVKDFISKAKE 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
               + V        +V+  V + +  ML            + P VIL+ G+ G GKTT 
Sbjct: 58  AASGEAVIRSVKPADQVVKIVYDGLVDMLGGEVPTGLNLALNPPSVILMAGLQGSGKTTT 117

Query: 128 IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GKL+ ++      KV++A+ DT R AA++QL + A +   + +    G  AA +A  A 
Sbjct: 118 TGKLALRLNKVERKKVLVASLDTRRPAAMEQLAMLAKQVEVECLPIVPGQSAADIARRAL 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+    DVLI+DTAGR   +  +M+   ++ R+        P   L V D+ TGQ+A+
Sbjct: 178 TAAKLGGYDVLILDTAGRTTLDEAMMSEAAEIARI------AQPSETLLVADSLTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           R  + FH     TGLI+T+ DG  RGG  + +     +P+ FLG GE I+ L+ F A+  
Sbjct: 232 RTAKAFHERLPLTGLILTRADGDGRGGAALSMRHVTGLPIKFLGAGEKIDALDVFDARRV 291

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 292 AGRILGQGD 300


>gi|282889840|ref|ZP_06298379.1| hypothetical protein pah_c004o251 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500414|gb|EFB42694.1| hypothetical protein pah_c004o251 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 442

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 148/303 (48%), Gaps = 19/303 (6%)

Query: 24  TSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA--- 76
            + K++  I+ ++  + L ++ + E   E+   L+ +D+  +V + +V+ +  K      
Sbjct: 5   LTEKMQGLISKLVGKKTLTEENIAEAMTEVRLALLDADVNYSVVKTLVKRVKEKAVGDVL 64

Query: 77  -KDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            K VS  Q+ +  V + +  ++       N   +  P VI++ G+ G GKTT   KL+K 
Sbjct: 65  IKSVSPGQQFIKIVHDELVALMGGAEAAVNL--TGNPAVIMLCGLQGCGKTTHSAKLAKY 122

Query: 135 MSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +         +L A D  R AAI+QL+    +            D   +A +A  QA+ +
Sbjct: 123 LKRKNNCKNPLLVACDLQRPAAINQLQTLGAQIGVPVFTIPGEKDPVKVAQQALAQAKKE 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DVLI+DTAGRLH +  L      M+++ K  D   P  +L V +A TGQ+A++    F
Sbjct: 183 NHDVLIVDTAGRLHVDEEL------MLQLEKVRDALQPGEILFVANAATGQDAVKVAAEF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +A    TG I+T +DG+ RGG  I I      P+ F G+GE ++D++ F     +  I G
Sbjct: 237 NARVAVTGTILTMLDGSTRGGAAISIKEVTGKPLKFEGIGEKLDDIQVFNPMSMADRILG 296

Query: 313 CLD 315
             D
Sbjct: 297 MGD 299


>gi|331269656|ref|YP_004396148.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum BKT015925]
 gi|329126206|gb|AEB76151.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum BKT015925]
          Length = 302

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 124/302 (41%), Positives = 191/302 (63%), Gaps = 5/302 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   KL  G A T     E +++++  + ++DD + EELE++LI +DIGV  + ++++ +
Sbjct: 4   NLFNKLKDGLAKTKNNFTEKVSEVLKLAVKIDDELFEELEEILITADIGVDTSLEVIDRV 63

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K   K ++  + +YD + E++ ++L    K         P  ILV+GVNG GKTT IG
Sbjct: 64  RDKVKEKRITDPKEVYDCLKEVLIEILTEEDKKEEGSM---PKTILVIGVNGAGKTTSIG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+S K+   G KV++AA DTFR+AAIDQL++W++R+  D +  + GSD A++ ++A + +
Sbjct: 121 KISHKLKHEGHKVIMAAADTFRAAAIDQLEVWSNRSGVDIIRHQEGSDPASVVFDAIQAS 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI DTAGRLHN   LM  + K+ R++ R    +    L VLD TTGQNAL+Q 
Sbjct: 181 KARKADVLICDTAGRLHNKKNLMNELEKINRIIDREYSDSNKETLLVLDGTTGQNALQQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  V    G+++TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F A+ F   
Sbjct: 241 KQFAEVCPIDGIVITKLDGTAKGGVIIAIKHQLDIPVKFIGVGEGIDDLQEFDAESFVEA 300

Query: 310 IT 311
           + 
Sbjct: 301 LF 302


>gi|212715269|ref|ZP_03323397.1| hypothetical protein BIFCAT_00161 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661950|gb|EEB22525.1| hypothetical protein BIFCAT_00161 [Bifidobacterium catenulatum DSM
           16992]
          Length = 420

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 182/312 (58%), Gaps = 7/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + + +++L    + +     + + +I++  +L +   E++ED L+ +D+G   ++
Sbjct: 110 ETPEAAGTRMQRLKARLSKSGNPFGKALFNILAKDQLSEADWEDVEDTLLLADVGAEASE 169

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWD--FSHRPHVILVVGVN 120
           ++VEEL         S    +      +L+  +     +  N D   +++P VI++VGVN
Sbjct: 170 QLVEELRNDARIAGQSDPAEVRAALKDKLLKLVGTDTDRRLNADKEGANKPSVIIMVGVN 229

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT  GKLS+ +   G +VML A DTFR+AA DQL+ W  +     V S+  G+D A
Sbjct: 230 GTGKTTTAGKLSRLLVSEGKQVMLGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPA 289

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A+EA  +A+ + VDVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDA
Sbjct: 290 SVAFEASAKAKEENVDVLIIDTAGRLQNKANLMDELGKIRRVTEKNLP--VDEVLLVLDA 347

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL 
Sbjct: 348 TTGQNGMTQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLA 407

Query: 300 PFVAKDFSAVIT 311
           PF  + F   I 
Sbjct: 408 PFDPEGFVDGIL 419


>gi|294085383|ref|YP_003552143.1| signal recognition particle protein [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664958|gb|ADE40059.1| signal recognition particle protein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 531

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL      +     L     D    E+   L+ +D+ + V +  +E++      
Sbjct: 32  FENLKDKLAGVFDGLAKRGALREGDVDAALREVRLALLDADVALPVVKTFIEKVREGAVG 91

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q+V+  V++ +   L     P     ++ P VIL+ G+ G GKTT  GKL
Sbjct: 92  VEVLKSVRPDQQVIKLVNDALIDALGGDPAPLMTG-TNPPSVILMAGLQGSGKTTTAGKL 150

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++++ +    KVM+A+ D  R AA +QL++  ++  A  +    G     +A  A + A+
Sbjct: 151 ARRLRERDRKKVMVASLDVTRPAAREQLRLLGEQAEAGILPELDGESPVQIAKRALQSAK 210

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGR+  +  LMA +  +           PH VL V DA TGQ+A+    
Sbjct: 211 LQAYDVLILDTAGRISVDEALMAELRDVRAATN------PHEVLLVADAMTGQDAVTTAS 264

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+++T++DG ARGG  + +      P+ F+G+GE  + LE F     +  I
Sbjct: 265 AFNDAVGVTGIVLTRLDGDARGGAALSMRQITGCPIKFVGIGEKQDALEEFDPARLAGRI 324

Query: 311 TGCLD 315
               D
Sbjct: 325 LDMGD 329


>gi|116753684|ref|YP_842802.1| signal recognition particle protein Srp54 [Methanosaeta thermophila
           PT]
 gi|121693787|sp|A0B638|SRP54_METTP RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|116665135|gb|ABK14162.1| signal recognition particle subunit FFH/SRP54 (srp54) [Methanosaeta
           thermophila PT]
          Length = 444

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 89/300 (29%), Positives = 141/300 (47%), Gaps = 14/300 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L+  +  I S+ R+D    D    +++  L+++D+ V +   +   +  +   
Sbjct: 3   LDNLGGSLRGALKKIASATRVDKALVDDAVRDIQRALLQADVNVKLVMSLSNRIRERALN 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +         + V  ++++ L+ L      D   +   I++VG+ G GKTT   KL+   
Sbjct: 63  EKPPAGMNPREHVINIVYQELINLIGRGT-DIPLKKQTIMLVGLQGSGKTTTAAKLATYF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              GL+  +   DTFR+ A DQLK   DR    F   +   +A  +A    +  +  K D
Sbjct: 122 QRRGLRTAVICADTFRAGAYDQLKALCDRQGIFFYGEKGNENAPEVAKNGLEATK--KYD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I+DTAGR    S L+  +  +  V+           L V+DA  GQ A  Q   F+  
Sbjct: 180 VRIVDTAGRHALESDLIQEMKDIHAVVNA------DHKLLVMDAAIGQQASEQARAFNEA 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G TG+I+TK+DGTA+GGG +  V   K  V F+GVGE  +DLE F A  F + + G  D
Sbjct: 234 VGITGVIITKLDGTAKGGGALSAVAETKTSVAFIGVGETASDLEKFEADRFISRLLGMGD 293


>gi|114799508|ref|YP_758770.1| signal recognition particle protein [Hyphomonas neptunium ATCC
           15444]
 gi|114739682|gb|ABI77807.1| signal recognition particle protein [Hyphomonas neptunium ATCC
           15444]
          Length = 491

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 149/307 (48%), Gaps = 18/307 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L D        E+   L+ +D+ + V +  VE++  +   
Sbjct: 2   FDALSERLGSIFDGLTGRGALSDKDVSEALREIRVALLEADVALPVVKDFVEKVRERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V + +  ML    +  +      P V+++ G+ G GKTT  GK+
Sbjct: 62  EEVIRSVKPGQQVIKIVYDALVDMLGSDEEENHLRVDTPPAVVMMAGLQGSGKTTTTGKI 121

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTS--ADFVCSEIGSDAAALAYEAFKQ 188
           +K+++D G K +L A+ D  R AA++QL I A +       +    G   A +A  A + 
Sbjct: 122 AKRLADRGKKKVLLASLDVRRPAAMEQLAILAKQAGETVSSLPIIPGQLPADIARRALQA 181

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    DVL +DTAGR   +  +M+   ++  +        P  VL V DA TGQ+A+  
Sbjct: 182 AKIGGYDVLFLDTAGRTSIDEQMMSEAAEIAAIAN------PSEVLLVADALTGQDAVET 235

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              FH     TGL++T+MDG  RGG  + +     +P+ FLGVGE ++ L+ F AK  + 
Sbjct: 236 ARRFHERLPLTGLVLTRMDGDGRGGAALSMRAVTGLPIKFLGVGEKLDGLDAFDAKRVAG 295

Query: 309 VITGCLD 315
            I G  D
Sbjct: 296 RILGQGD 302


>gi|203284591|ref|YP_002222331.1| signal recognition particle protein [Borrelia duttonii Ly]
 gi|201084034|gb|ACH93625.1| signal recognition particle protein [Borrelia duttonii Ly]
          Length = 449

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGIT-----DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + S   K+ I       +I+ + ++  + + +++ LI +D+ + V ++ V  ++ +  
Sbjct: 2   FENLSAGFKDFIKYVSGKAVINEKNIETAI-DTIKNTLIEADVNLRVVRRFVNSVVEEAK 60

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              V          +  V++ +   L         +  ++   IL++G+ G GKTT   K
Sbjct: 61  GIKVLRGVDPKSHFIKIVNDKLVNFLGDKHSELILNPINKLSCILMLGLQGSGKTTTCAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++     KV+L A DTFR+AAI+QLK+   + +      E       +  ++ + A+
Sbjct: 121 LAMRLKSENRKVLLVAADTFRAAAIEQLKVLGSQINISVFALENEDSPIKVVKKSIEYAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  D +IIDT GRL    +L+  I  +  ++       P   + V DA TGQ A+   +
Sbjct: 181 AELFDTVIIDTRGRLEVEDLLLREIIDIKNIV------VPTETILVADAMTGQVAVNIAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+I TK D  ARGG ++ +     +P+ F+GVGE   DL+ F     S+ I
Sbjct: 235 KFNESVGITGVIFTKFDSDARGGAILSLKTICGVPIKFVGVGEKPEDLDVFYPDRVSSRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|298253255|ref|ZP_06977047.1| signal recognition particle GTPase [Gardnerella vaginalis 5-1]
 gi|297532650|gb|EFH71536.1| signal recognition particle GTPase [Gardnerella vaginalis 5-1]
          Length = 393

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 119/321 (37%), Positives = 188/321 (58%), Gaps = 12/321 (3%)

Query: 1   MSNQKVASESL-----SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR 55
           + N++V SE L     S I++L +  A ++      + +IIS   L +   E++ED L+ 
Sbjct: 74  VPNEEVKSELLPESTSSRIKRLRERLAHSANPFGRALFNIISKDHLSEEDWEDVEDTLLM 133

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFS--HRP 111
           +D+G   ++++VE+L         S    ++    ++L+  +     +  N D S  H P
Sbjct: 134 ADVGSRASEELVEDLRKDARIAGTSNSEDVHSALRTKLLKIVDEDADRRLNVDKSNAHHP 193

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV- 170
            VI++VGVNG GKTT  GKL++        VM AA DTFR+AA DQL+ WA   S   V 
Sbjct: 194 SVIMMVGVNGTGKTTTAGKLARLFIAKKRSVMFAAADTFRAAAADQLETWASAVSVPVVR 253

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++ G+D A++A+ A  +A+ ++ D+LI+DTAGRL N + LM  +GK+ RV+++  P   
Sbjct: 254 ANKDGADPASVAFIAANKAKEEQTDLLIVDTAGRLQNKANLMEELGKIRRVIEKTMP--V 311

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             VL VLDATTGQN + Q ++F    G TG+++TK+DG+A+GG +I +     +PV  +G
Sbjct: 312 DEVLLVLDATTGQNGMSQAKVFAEAIGITGVVLTKLDGSAKGGIVIAVQHELGVPVKLVG 371

Query: 291 VGEGINDLEPFVAKDFSAVIT 311
           +GEG +DL PF A+ F   + 
Sbjct: 372 LGEGPDDLVPFDAQSFVDGLL 392


>gi|255029040|ref|ZP_05300991.1| hypothetical protein LmonL_07576 [Listeria monocytogenes LO28]
          Length = 289

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 115/262 (43%), Positives = 164/262 (62%), Gaps = 9/262 (3%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----- 106
           +LI +D+G     ++V+ L  +   +++S      DV E+I + L+ + +    +     
Sbjct: 19  ILIGADVGFETVMELVDTLRREVQLRNISDP---KDVQEVIVEKLVEIYQGDEKEDEALH 75

Query: 107 -FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
                  VIL VGVNGVGKTT IGK++ +    G KVMLAAGDTFR+ AIDQL++W +RT
Sbjct: 76  IEEDGLTVILFVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERT 135

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             D +    GSD AA+ ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R 
Sbjct: 136 GVDVIKQAEGSDPAAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITRE 195

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P+APH VL VLDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IP
Sbjct: 196 IPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIP 255

Query: 286 VYFLGVGEGINDLEPFVAKDFS 307
           V F+G+GE ++DL+ F A ++ 
Sbjct: 256 VKFVGLGEQMDDLQAFDANEYV 277


>gi|91787174|ref|YP_548126.1| signal recognition particle-docking protein FtsY [Polaromonas sp.
           JS666]
 gi|91696399|gb|ABE43228.1| signal recognition particle-docking protein FtsY [Polaromonas sp.
           JS666]
          Length = 379

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 121/318 (38%), Positives = 188/318 (59%), Gaps = 18/318 (5%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           VA E   W+ KL  G   T       I+ + +  R+DD + E+LE  L+ +D GV   + 
Sbjct: 67  VAPERERWLAKLQAGLRKT----GSSISTVFTGSRIDDELYEDLETALLMADTGVKATEY 122

Query: 66  IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++ E+  +     ++    + + + + + ++L PL +       ++P VI+V GVNG GK
Sbjct: 123 LLAEVKRRVKDGGMTHPVAVKNALVDALAQLLKPLEQALVIG-QYQPTVIMVTGVNGAGK 181

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL++ ++  G  V+LAA DTFR+AA +QL IWADR + + + S+ G D AA++++
Sbjct: 182 TTSIGKLTRHLAAEGASVLLAAADTFRAAAREQLSIWADRNTVEII-SQAGGDPAAVSFD 240

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A    +A+  DV+++DTAGRL     LM  + K+ RV+++ D  APH VL V+D  TGQN
Sbjct: 241 AVTAGKARGKDVVLVDTAGRLPTQLHLMEELRKIKRVVQKADATAPHEVLLVIDGNTGQN 300

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK-----------IPVYFLGVGE 293
           AL QV+ F      TGL++TK+DGTA+GG L  I +  +           +PVYF+GVGE
Sbjct: 301 ALSQVKAFDEALQLTGLVVTKLDGTAKGGVLAAIALWARERQEVAPDLRPVPVYFIGVGE 360

Query: 294 GINDLEPFVAKDFSAVIT 311
            + DLE F A++F+  + 
Sbjct: 361 KLEDLETFSAREFAQALL 378


>gi|289704692|ref|ZP_06501118.1| signal recognition particle-docking protein FtsY [Micrococcus
           luteus SK58]
 gi|289558584|gb|EFD51849.1| signal recognition particle-docking protein FtsY [Micrococcus
           luteus SK58]
          Length = 399

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 111/293 (37%), Positives = 172/293 (58%), Gaps = 6/293 (2%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
            ++    +G+  ++S  R+DD V +E+E+ L+ +D+G     ++V+ L  +   +     
Sbjct: 107 KSNNVFGKGLLALLSQDRIDDDVWDEIEETLLMADLGTEPTLELVDRLKARVTVEGTRDP 166

Query: 83  RVLYDV-SELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             +  +  E +  M+ P    +        RP V +VVGVNGVGKTT +GKL++ +    
Sbjct: 167 EQVRTLLREELVAMVDPSMDRRLAATRRGERPAVTMVVGVNGVGKTTTVGKLARVLVAED 226

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLI 198
             V+L A DTFR+AA +QL  W  R   + V SE  G+D A++A+EA +   A+ VDV++
Sbjct: 227 RTVVLGAADTFRAAAAEQLATWGARVGVETVRSEKEGADPASVAFEAVEHGIAEGVDVVL 286

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL N + LM  +GK+ RV+++        VL VLDATTGQN L Q ++F  V   
Sbjct: 287 VDTAGRLQNKANLMDELGKIKRVIEKQAE--VDEVLLVLDATTGQNGLTQAKVFAEVVDV 344

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           TG+++TK+DGTA+GG +I I     +PV  +G+GEG +DL PF A+ F   + 
Sbjct: 345 TGIVLTKLDGTAKGGIVIAIQRQLGVPVKLIGLGEGPDDLAPFTAEGFVDALL 397


>gi|124028501|ref|YP_001013821.1| Signal recognition particle GTPase [Hyperthermus butylicus DSM
           5456]
 gi|171769654|sp|A2BNB5|SRP54_HYPBU RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|123979195|gb|ABM81476.1| Signal recognition particle GTPase [Hyperthermus butylicus DSM
           5456]
          Length = 447

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 141/304 (46%), Gaps = 14/304 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           G       + + +        + +    +L+  LI +D+ V +   + + +  +   +  
Sbjct: 3   GLDDIRRAVSKLLKRSGPYENIVNEFIRDLQRALISADVNVRLVFNLTKRIRERALKEQP 62

Query: 80  SV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                  + ++    + + K+     +P      + P+VI++VGV G GKTT +GKL+K 
Sbjct: 63  PPGLSRREWLVKLTYDELVKLFGGEYEP-EVKPPYTPYVIMMVGVQGSGKTTTVGKLAKF 121

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +V + A DT+R  A +QLK  ADR  A F       D   +A    ++ + +  
Sbjct: 122 YRGMGYRVGVVAADTYRPGAYEQLKQLADRAGAMFYGEPGSKDPVGIARRGVEELKQRGA 181

Query: 195 DVLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           D++I+DTAGR        L+  + ++   +K      P  V+ V+DA  GQ +    + F
Sbjct: 182 DIVIVDTAGRHGYGEEEALLDEMKRIAEAIK------PDEVVLVIDAAMGQKSYDLAKRF 235

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           H       +I+TKMDGTA+GGG +  V      + F+G GE I+++E F  K F A + G
Sbjct: 236 HEATPVGSIIVTKMDGTAKGGGALSAVAATGARIKFIGTGEDIDEIEVFRPKRFVARLLG 295

Query: 313 CLDY 316
             D 
Sbjct: 296 MGDL 299


>gi|149916818|ref|ZP_01905320.1| signal recognition particle protein [Plesiocystis pacifica SIR-1]
 gi|149822535|gb|EDM81924.1| signal recognition particle protein [Plesiocystis pacifica SIR-1]
          Length = 591

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 83/318 (26%), Positives = 149/318 (46%), Gaps = 25/318 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               ++KGF +   +L       +S   +D    +++   L+ +D+     +K +  +  
Sbjct: 1   MFETISKGFRAARERLTG--KGELSEDVID-AALKDVRLSLLEADVEFRTVKKFLRAVKA 57

Query: 73  KRYAKDV--------------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           K   ++V                   ++   E + +++ P+        +     I++VG
Sbjct: 58  KALGEEVQLVAKGKDGKVRVRPEDHFVHICHEALVELMGPVDTSL-ARANKGVTGIMMVG 116

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT  GKL++K+   G KVML A D +R AAI QL++  +R          G++ 
Sbjct: 117 LQGSGKTTTTGKLARKLQKEGHKVMLVAADVYRPAAIHQLQVLGERLGVPVFA-RPGANP 175

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +  +A +QA  + +D ++ DTAGRL  +  LM  + K+   +   +      +  V+D
Sbjct: 176 VDICRDATEQAAMEGMDFVLYDTAGRLTVDDALMEELEKIESSVHPAN------IFLVID 229

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A++  + F      TG+++TK+DG ARGG  + I      P+ FLG+GE ++ L
Sbjct: 230 AMIGQDAVQTAKAFDERLELTGVVLTKLDGDARGGAALSIKAATGKPIKFLGMGESLDKL 289

Query: 299 EPFVAKDFSAVITGCLDY 316
           E F  +  +  I G  D 
Sbjct: 290 EDFRPEGLAGRILGMGDL 307


>gi|256810320|ref|YP_003127689.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793520|gb|ACV24189.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus fervens AG86]
          Length = 451

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 152/308 (49%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L + +  +       ++L   V ++++  LI++D+ V +  K+ +E+  +   
Sbjct: 2   LDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALK 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++        + ++  V E + K+L   +K        + +VIL+VG+ G GKTT   KL
Sbjct: 62  EETPKGLSKKEHIIKIVYEELVKLLGEEAKKLELS-PKKQNVILLVGIQGSGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQAQ 190
           ++ +   GLK  L A DT+R AA +QLK  A++        E  +     +  E  ++ +
Sbjct: 121 ARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPLYGDETKTKSPVEIVKEGMEKFK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K DVLIIDTAGR      L+  + ++  V        P  ++ V+D T GQ A  Q +
Sbjct: 181 --KADVLIIDTAGRHKEERGLLEEMKQIKEVTN------PDEIILVIDGTIGQQAGIQAK 232

Query: 251 MFHAVAG-TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            F    G    +I+TK+DG+A+GGG +  V     P+ F+G+GEGI+DLEPF  K F + 
Sbjct: 233 AFKEAVGEIGSIIVTKLDGSAKGGGALSAVAETGAPIKFIGIGEGIDDLEPFDPKKFISR 292

Query: 310 ITGCLDYG 317
           + G  D  
Sbjct: 293 LLGMGDLD 300


>gi|307718927|ref|YP_003874459.1| signal recognition particle-docking protein FtsY [Spirochaeta
           thermophila DSM 6192]
 gi|306532652|gb|ADN02186.1| signal recognition particle-docking protein FtsY [Spirochaeta
           thermophila DSM 6192]
          Length = 289

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 107/287 (37%), Positives = 163/287 (56%), Gaps = 6/287 (2%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L + +  +    R D+   EE EDLLI +D+G   A ++VEE+  +   + V     +  
Sbjct: 4   LMDRLRSLWGGARFDEAFWEEFEDLLIEADLGAETAFEVVEEVQRRAKKEGVVD---VEG 60

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMS--DAGLKVML 144
           V E+I  +L    +  ++       V+ L VGVNGVGKTT I K +  +        V+L
Sbjct: 61  VREVIKDVLRRYVRAGDFSLPDSGTVVFLFVGVNGVGKTTTIAKFAHFIRSTWGRDDVVL 120

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AAGDTFR+ AIDQL++W +R     V  + G+D AA+ ++A +  + +   V++ DTAGR
Sbjct: 121 AAGDTFRAGAIDQLRVWGERLGVRVVAQQPGADPAAVIFDAIQSVERRGGGVVLADTAGR 180

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
            HN + LM  + K+ RV++     A +  L V+DA+TGQNA RQ E+F    G  GL++ 
Sbjct: 181 FHNRASLMDELAKVDRVIRSKAADADYRRLLVVDASTGQNAFRQAEVFQETVGLDGLVLA 240

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K DG A+GG L+PI    +IP  F+G GEG+ DL PF  +++ + + 
Sbjct: 241 KYDGAAKGGVLVPISRRLEIPAVFVGTGEGLEDLRPFDVEEYLSRLV 287


>gi|319946576|ref|ZP_08020810.1| cell division protein FtsY [Streptococcus australis ATCC 700641]
 gi|319746624|gb|EFV98883.1| cell division protein FtsY [Streptococcus australis ATCC 700641]
          Length = 556

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 175/313 (55%), Gaps = 3/313 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S  ++A  + +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV
Sbjct: 240 SEPEIAEPTETVQDKYNRSLKKTRTGFGAALNAFFANFRSVDEDFFEELEELLIMSDVGV 299

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHRPHVILVVG 118
            VA  + EEL  +   ++     VL  V       L      +N   +F     V+L VG
Sbjct: 300 QVASNLTEELRYEARLENAKKPDVLRRVIIEKLVDLYEKDGQYNEQINFKDGLTVMLFVG 359

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD 
Sbjct: 360 VNGVGKTTSIGKLAHKYKKEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDP 419

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ ++  ++A A++VDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LD
Sbjct: 420 ASVVFDGMERAVAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPTAPHETFLALD 479

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+
Sbjct: 480 ASTGQNALVQAKEFSKITPITGIVLTKIDGTARGGVVLAIREELDIPVKLIGFGEKIDDI 539

Query: 299 EPFVAKDFSAVIT 311
             F +++F   + 
Sbjct: 540 GEFNSENFMRGLL 552


>gi|254172639|ref|ZP_04879314.1| signal recognition particle-docking protein FtsY [Thermococcus sp.
           AM4]
 gi|214033568|gb|EEB74395.1| signal recognition particle-docking protein FtsY [Thermococcus sp.
           AM4]
          Length = 328

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 96/294 (32%), Positives = 156/294 (53%), Gaps = 15/294 (5%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L E +  +    +  +   ++LE  L+ +D+ + V  ++ E +  K   + V +      
Sbjct: 38  LFERLLQVEIKEKDVERALDDLEIELLEADVALEVVDELRESIKRKLVGRKVKIGTDKAK 97

Query: 88  -----VSELIHKMLMPLSKPFNWD----FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
                V E + ++L P  K    +       +P+VI+ VG NG GKTT I KL+  +   
Sbjct: 98  IIEDAVKEAVLEVLTPPRKINLLEEIRAKKEKPYVIVFVGFNGSGKTTTIAKLAHWLKKN 157

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           GL V++AA DTFR+ AI+Q++  A R     +    G+D AA+AY+A + A+A+ +DV++
Sbjct: 158 GLSVVIAASDTFRAGAIEQVEEHAKRVGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVL 217

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGR   N  LM  + K++RV K      P  V+ V D+  G + + Q   F+     
Sbjct: 218 VDTAGRNELNRNLMDEMKKIVRVTK------PDLVIFVGDSLAGNSIIDQARQFNEAVRI 271

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            G+I+TK+D  +RGG  + I      P+ F+GVG+G +DL+PF  K F  +I G
Sbjct: 272 DGVILTKLDADSRGGAALSISHAIGAPILFVGVGQGYDDLKPFDEKWFVNLIFG 325


>gi|88802664|ref|ZP_01118191.1| putative recognition particle-docking protein [Polaribacter
           irgensii 23-P]
 gi|88781522|gb|EAR12700.1| putative recognition particle-docking protein [Polaribacter
           irgensii 23-P]
          Length = 317

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 128/313 (40%), Positives = 186/313 (59%), Gaps = 15/313 (4%)

Query: 11  LSWIRK---------LTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
           +S+++K         L KG   T     + ++  ++ +  +D  V + LE++L+ SD+GV
Sbjct: 1   MSFLKKIFSKEKKETLDKGLEKTKANFFDKLSKAVAGKSTVDAAVLDNLEEVLVASDVGV 60

Query: 61  AVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVIL 115
               KI++ +  +    K +    +   + E I  +L          F    + +P+V++
Sbjct: 61  KTTLKIIKRIEERVAKDKYLGTDELNALLKEEISGLLSETNLENETEFTIPANKKPYVVM 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT IGKL+ +    GLKV+L A DTFR+AAIDQL+IWADRT    V  E+G
Sbjct: 121 VVGVNGVGKTTTIGKLASQFKKQGLKVVLGAADTFRAAAIDQLQIWADRTDVPIVRQEMG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD A++A++    A  +  DV+IIDTAGRLHN   LM  + K+ RV++++   APH VL 
Sbjct: 181 SDPASVAFDTLTSAVKQDADVVIIDTAGRLHNKVNLMNELTKIKRVMQKVVVDAPHEVLL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNA  Q + F      T L +TK+DGTA+GG +I I    KIPV ++GVGEGI
Sbjct: 241 VLDGSTGQNAFEQAKHFTLATEVTSLAVTKLDGTAKGGVVIGISDQFKIPVKYIGVGEGI 300

Query: 296 NDLEPFVAKDFSA 308
           +DL+ F   +F A
Sbjct: 301 DDLQVFNKDEFVA 313


>gi|324502545|gb|ADY41120.1| Signal recognition particle 54 kDa protein [Ascaris suum]
          Length = 503

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    +++  I  +  +  +++     +  E+   L+ +D+ + + +++ + +      
Sbjct: 3   LADLGRRIRNAIGKLGQATIINEDELNAMLNEVCGALLEADVNIRLVKQLRDNVKKTLDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  V+ +R++   V   + K++ P  KP+      +P+V + VG+ G GKTT   KL
Sbjct: 63  DEMAGGVNKRRLIQRCVFTELMKLVDPGVKPYQ-PTKGKPNVFMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    +  S I  D   +A     + + 
Sbjct: 122 AYYYQKKGWKTCLICADTFRAGAFDQLKQNATKARIPYYGSYIEMDPVVIATNGVDKFKG 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR    + L   + ++   +       P++V+ V+DA+ GQ    Q   
Sbjct: 182 EGFEIIIVDTSGRHKQEASLFEEMLQVSNAIS------PNNVVFVMDASIGQACEAQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+D  A+GGG +  V   + P+ F+G GE I+D EPF  K F   + 
Sbjct: 236 FSTTVDVGSVIITKLDSHAKGGGALSAVAATRSPIIFIGTGEHIDDFEPFEVKPFVQKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|187736626|ref|YP_001878738.1| signal recognition particle protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426678|gb|ACD05957.1| signal recognition particle protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 479

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 140/305 (45%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F+  + KL      +    ++ +        ++   L+ +D+   VA++ +  +  +   
Sbjct: 2   FSLLADKLDNTFRRLRGLGKISEKNIADALRDIRLALLEADVEFGVAREFIGRVKERAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       ++++    + I  +L   +   +      P  I+VVG+NG GKTT   KL
Sbjct: 62  QEVLKSIKPGEQIVKIFRDEIAALLGGDAVGLDL---TDPARIMVVGLNGAGKTTTSAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQ 190
           + ++ + G + +L A D  R AA+DQL   A++        +    D  A+A EA + A+
Sbjct: 119 ALRLKNEGRRPLLVACDLVRPAAVDQLATLAEQIGVPVYKPAPGSRDVVAVAREALEWAR 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +   V+I DTAGR   +  L+  + ++   L       P   L V DA TGQ A+   +
Sbjct: 179 TQNGTVMIFDTAGRQEVDEALIDELRQLHAFLS------PRETLLVADAATGQQAVNVAQ 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG ARGG  + +      P+ F G GE ++   PFV    +  I
Sbjct: 233 TFDRAVNVTGIVLTKLDGDARGGAALSMRSVTGKPIKFSGEGEKLDQFGPFVPGRMADRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|67459498|ref|YP_247122.1| Signal recognition particle protein [Rickettsia felis URRWXCal2]
 gi|67005031|gb|AAY61957.1| Signal recognition particle protein [Rickettsia felis URRWXCal2]
          Length = 487

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 150/309 (48%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       KL    + I++  ++D  +R+ +   L+ SD+ + V +  + E+  
Sbjct: 39  MFKTLTQNLTKIFDKLVS--SGILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQ 95

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           K   ++V       Q ++  + E +  +L         + + +P V  L+VG+ G GKTT
Sbjct: 96  KALGQEVIKSVSPGQMIIKIIHEEMINLLASSESETKLNLNSKPPVNFLMVGLQGSGKTT 155

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+ ++ +   KV+L + DT+R AA +QL I A+    + +    G     +   A 
Sbjct: 156 ASSKLALRLKNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAI 215

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+     V+I DTAGR   +  +M     + ++++      P   L V+D+ TGQ+A+
Sbjct: 216 AEAKISAYGVVIYDTAGRTQIDKEMMEEALAIKKIVE------PTETLLVIDSMTGQDAV 269

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     +GLI++++DG ++GG  + +    K P+ FL  GE + DLE F A+  
Sbjct: 270 VTANSFNEKLEISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGEKLTDLEEFDAERL 329

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 330 ASRILDMGD 338


>gi|296876113|ref|ZP_06900167.1| cell division protein FtsY [Streptococcus parasanguinis ATCC 15912]
 gi|296432824|gb|EFH18617.1| cell division protein FtsY [Streptococcus parasanguinis ATCC 15912]
          Length = 552

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 171/310 (55%), Gaps = 3/310 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           +V  +  +   K  +    T       +    ++ R +D+   +ELE+LLI SD+GV VA
Sbjct: 239 EVDPQQETIQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFDELEELLIMSDVGVQVA 298

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHRPHVILVVGVNG 121
             + EEL  +   ++      L  V       L      FN    F     V+L VGVNG
Sbjct: 299 SNLTEELRYEARLENAKKPDALKRVIIEKLVDLYEKDGQFNEAIRFQDGLTVMLFVGVNG 358

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V     SD A++
Sbjct: 359 VGKTTSIGKLAHRYKQEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASV 418

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++  ++A A+ +DVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+T
Sbjct: 419 VFDGMERAIAENIDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLALDAST 478

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+ PF
Sbjct: 479 GQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIREELDIPVKLIGFGEKIDDIGPF 538

Query: 302 VAKDFSAVIT 311
            +++F   + 
Sbjct: 539 HSENFMRGLL 548


>gi|291320541|ref|YP_003515805.1| signal recognition particle protein [Mycoplasma agalactiae]
 gi|290752876|emb|CBH40851.1| Signal Recognition Particle Protein [Mycoplasma agalactiae]
          Length = 452

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 142/303 (46%), Gaps = 19/303 (6%)

Query: 24  TSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
              ++++ I  + S   + +     V  +++  L+ +D+ + V +  V  +  K  + ++
Sbjct: 5   LENRIQKSIKKMASKTVVSEEDILGVTRDIKMALLEADVNLKVVKDFVANVKEKALSANL 64

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                + Q ++  V   +  +L    +P   + + +P++I++ G+ G GKTT   K++  
Sbjct: 65  VGTLNAEQTMIKIVHNELVDILGKEVRPI--EITKKPYIIMMTGLQGSGKTTACAKIAYF 122

Query: 135 MSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +       K +L A D +R AA+ QL   A     D+        A  +  +A   A+  
Sbjct: 123 LKKKNQIEKPLLVAADIYRPAAVQQLVTLAKGIQVDYFEKGTNFSAQEIVKDALVFAKEN 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D++IIDTAGRL  +  LM  + ++  + +      P  +  V DA +GQ+ +     F
Sbjct: 183 KNDLIIIDTAGRLSIDEPLMNELWELKNISE------PQEIFFVADALSGQDIINVASAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     TG ++TK+D  ARGG  + +     +P+ F+G GE I++L+ F     +  I G
Sbjct: 237 NDRLKLTGSVITKLDSDARGGAALSLSKVLSLPIRFIGTGEKISNLDLFYPDRMADRILG 296

Query: 313 CLD 315
             D
Sbjct: 297 MGD 299


>gi|239917429|ref|YP_002956987.1| signal recognition particle-docking protein FtsY [Micrococcus
           luteus NCTC 2665]
 gi|281414081|ref|ZP_06245823.1| signal recognition particle-docking protein FtsY [Micrococcus
           luteus NCTC 2665]
 gi|239838636|gb|ACS30433.1| signal recognition particle-docking protein FtsY [Micrococcus
           luteus NCTC 2665]
          Length = 393

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 111/293 (37%), Positives = 172/293 (58%), Gaps = 6/293 (2%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
            ++    +G+  ++S  R+DD V +E+E+ L+ +D+G     ++V+ L  +   +     
Sbjct: 101 KSNNVFGKGLLALLSQDRIDDDVWDEIEETLLMADLGTEPTLELVDRLKARVTVEGTRDP 160

Query: 83  RVLYDV-SELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             +  +  E +  M+ P    +        RP V +VVGVNGVGKTT +GKL++ +    
Sbjct: 161 EQVRTLLREELVAMVDPSMDRRLAATRRGDRPAVTMVVGVNGVGKTTTVGKLARVLVAED 220

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLI 198
             V+L A DTFR+AA +QL  W  R   + V SE  G+D A++A+EA +   A+ VDV++
Sbjct: 221 RTVVLGAADTFRAAAAEQLATWGARVGVETVRSEKEGADPASVAFEAVEHGIAEGVDVVL 280

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL N + LM  +GK+ RV+++        VL VLDATTGQN L Q ++F  V   
Sbjct: 281 VDTAGRLQNKANLMDELGKIKRVIEKQAE--VDEVLLVLDATTGQNGLTQAKVFAEVVDV 338

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           TG+++TK+DGTA+GG +I I     +PV  +G+GEG +DL PF A+ F   + 
Sbjct: 339 TGIVLTKLDGTAKGGIVIAIQRQLGVPVKLIGLGEGPDDLAPFTAEGFVDALL 391


>gi|311065027|ref|YP_003971753.1| cell division protein FtsY [Bifidobacterium bifidum PRL2010]
 gi|310867347|gb|ADP36716.1| FtsY Cell division protein [Bifidobacterium bifidum PRL2010]
          Length = 413

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 115/315 (36%), Positives = 182/315 (57%), Gaps = 13/315 (4%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            V  +S S I++L    + +S    + + +I++   L +   E++ED L+ +D+G   ++
Sbjct: 103 DVPEKSGSRIQRLKAKLSRSSNPFGKALFNILTKDNLSESDWEDVEDTLLLADVGAEASE 162

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-----SKPFNWDF--SHRPHVILVV 117
           ++V EL        ++ +    +V   +   ++ L      +  N D   +H+P VI++V
Sbjct: 163 QLVGELRRDAR---ITGKASPDEVRATLRDNMLDLVGRDTDRRLNVDKPDAHKPGVIIMV 219

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT  GKL++       KV++ A DTFR+AA DQL+ W  R +   V S+  G+
Sbjct: 220 GVNGTGKTTTAGKLARLFVSEDKKVVMGAADTFRAAAADQLETWGARVNVPVVRSDKDGA 279

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL V
Sbjct: 280 DPASVAFEAAARAKEDDADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLP--VDEVLLV 337

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +
Sbjct: 338 LDATTGQNGMAQAKVFAEAIGLTGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPD 397

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF  + F   I 
Sbjct: 398 DLAPFDPEGFVDGIL 412


>gi|289548376|ref|YP_003473364.1| signal recognition particle-docking protein FtsY [Thermocrinis
           albus DSM 14484]
 gi|289181993|gb|ADC89237.1| signal recognition particle-docking protein FtsY [Thermocrinis
           albus DSM 14484]
          Length = 456

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 112/306 (36%), Positives = 176/306 (57%), Gaps = 8/306 (2%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
                S + K+ +    T   L+  +  + + R++DD + EELE+ L+++DIGV    K+
Sbjct: 157 EKPKESLLDKIRRSLRKTKEVLE--LKVLFAGRKVDDQLLEELEERLVKADIGVKTVAKL 214

Query: 67  VEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           VE+L       ++     L  +  E ++ ++                V L +GVNG GKT
Sbjct: 215 VEDLRKDAIRLNIKTWEELEPLLKEKVYTLIKDCRGDLKEGR-----VYLFLGVNGSGKT 269

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+  +   G KV+L A DTFRSAAI+QL++WA+R+ A  V    G+D AA+ ++A
Sbjct: 270 TTIGKLAFLLRQRGKKVLLCAADTFRSAAIEQLEVWAERSGAHIVKHREGADPAAVVFDA 329

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K AQ +  DV+++DTAGRLH    L+  + K+ + ++R  P  P   L VLDAT GQN+
Sbjct: 330 MKVAQEQGYDVVLVDTAGRLHTKEPLIRELRKIKQTIQRFFPEEPSETLLVLDATVGQNS 389

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q ++F      TG+++TK+D +++GG ++ I    KIPV  +G+GEGI+DL+PF  K 
Sbjct: 390 ISQAKVFKEALDITGIVLTKLDSSSKGGAVVAICQDLKIPVKLVGLGEGIDDLQPFDPKV 449

Query: 306 FSAVIT 311
           F   + 
Sbjct: 450 FVEELL 455


>gi|242054557|ref|XP_002456424.1| hypothetical protein SORBIDRAFT_03g036030 [Sorghum bicolor]
 gi|241928399|gb|EES01544.1| hypothetical protein SORBIDRAFT_03g036030 [Sorghum bicolor]
          Length = 496

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 143/305 (46%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A     +   +  + ++  +D+ V      E+   L+++D+   + + +   +      
Sbjct: 3   LAQLGGSISRALAQMSNATVIDEKVLNDCLNEISRALLQADVQFKMVRDMQANIKRIVNL 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A   + +R++   V   +  ML P  KP       +P V++ VG+ G GKTT   K 
Sbjct: 63  EALAAGTNKRRIMQQAVFTELCNMLDP-GKPSFTPKKGKPSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + 
Sbjct: 122 AYYHQRKGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE I++ E F  K F + + 
Sbjct: 236 FKQSVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|51473373|ref|YP_067130.1| signal recognition particle protein [Rickettsia typhi str.
           Wilmington]
 gi|81826334|sp|Q68XJ4|SRP54_RICTY RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|51459685|gb|AAU03648.1| signal recognition particle protein [Rickettsia typhi str.
           Wilmington]
          Length = 449

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 153/309 (49%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       +L    + I++  ++D  +R+ +   L+ SD+ + V +  + E+  
Sbjct: 1   MFKTLTQNLTKIFDRLVN--SGILTENQIDTAMRD-VRVALLESDVALPVIKGFIAEVKQ 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           K   ++V       Q ++  + E +  +L         + + +P V +L+VG+ G GKTT
Sbjct: 58  KALGQEVIKSVSPGQMIIKIIHEEMINLLASSESTTKLNLNSKPPVNLLMVGLQGGGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL+  + +   KV+L + DT+R AA +QL I A+  + D +    G     +   A 
Sbjct: 118 ASGKLALLLKNQNKKVLLVSLDTYRPAAQEQLAIIANSVNIDSLPIVQGEQPLDIVKRAI 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    DV+I DTAGR+  ++++M     + ++L       P   L V+D+ TGQ+A+
Sbjct: 178 SEAKIFAYDVVIYDTAGRIQIDNVMMEEALAIKKILN------PTETLLVIDSMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F      +GLI++++DG  +GG  + +    + P+ FL  GE + DLE F A+  
Sbjct: 232 VTARSFSDKLEISGLILSRIDGDTKGGAALSVKYLTQKPIKFLSCGEKLTDLEEFDAERL 291

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 292 ASRILDMGD 300


>gi|71894046|ref|YP_278154.1| signal recognition particle [Mycoplasma synoviae 53]
 gi|71850834|gb|AAZ43443.1| signal recognition particle [Mycoplasma synoviae 53]
          Length = 455

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 83/310 (26%), Positives = 145/310 (46%), Gaps = 18/310 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L K F     K  +    ++    + +  RE ++  L+ +D+ + V ++ + ++  
Sbjct: 1   MFNILEKRFQKAIEKYSK--KTLLKEEDILEITRE-IKLALLEADVNLKVVKEFISKVKE 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K  + ++       Q++     + +  +L    K    D   +P VI++ G+ G GKTT 
Sbjct: 58  KALSSEIIGKLNPSQQMTKIFHDELVSILGGKIKEIKLD--KKPTVIMMCGLQGSGKTTT 115

Query: 128 IGKLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
             KL+  +    +    +L A D +R AAIDQL   A     D+    I + A  +   A
Sbjct: 116 AAKLAFYLRKKKMAASPLLVAADIYRPAAIDQLVSLAKSAQMDYFQMGINTPAEDIVKAA 175

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            +QA+  K D++IIDTAGRL  +  LM  +  + ++       +P  +L V DA +GQ+ 
Sbjct: 176 LEQARDNKNDLIIIDTAGRLSIDEKLMQELWNIKQI------ASPEEILFVADALSGQDI 229

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           +     FH     +G I+TK+D  ARGG  + I     +P+ F+G GE I++++ F    
Sbjct: 230 INVASAFHDKLKLSGSIITKLDSDARGGAALSIRFILNLPIKFIGTGEKISNIDLFYPDR 289

Query: 306 FSAVITGCLD 315
            +  I G  D
Sbjct: 290 MADRILGMGD 299


>gi|227495311|ref|ZP_03925627.1| signal recognition particle receptor [Actinomyces coleocanis DSM
           15436]
 gi|226831181|gb|EEH63564.1| signal recognition particle receptor [Actinomyces coleocanis DSM
           15436]
          Length = 392

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 116/314 (36%), Positives = 181/314 (57%), Gaps = 12/314 (3%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
              ++  + +L    A  S +L   +  I+S   L +   EE ED L+ +D+G+   ++I
Sbjct: 81  PETAVGRMERLRSRLAG-SGRLGATLLAILSKGDLSEADWEEFEDTLLMADLGLDATEEI 139

Query: 67  VEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF------SHRPHVILVVG 118
           +  L      K+ +    + ++  +EL+ ++   L +  N            P V+L+VG
Sbjct: 140 LGNLRKAVQVKNTTDPAEVKELLRAELLKQVNPELDRSLNLSVTETAEGKRHPAVVLMVG 199

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNG GKTT +GKL++       KV+L A DTFR+AA +QL  W DR   + V SE  G+D
Sbjct: 200 VNGTGKTTTVGKLARLFVAEDRKVVLGAADTFRAAAAEQLTTWGDRVGIETVRSEQEGAD 259

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A++A K+ Q  + DV+++DTAGRL N S LM  +GK+ RV+++  P +   VL VL
Sbjct: 260 PASVAFDAVKRGQEVEADVVLVDTAGRLQNKSTLMDELGKVKRVMEKRGPVS--EVLLVL 317

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN LRQ ++F  V   TG+++TK+DG+A+GG ++ +     +PV  +G+GEG +D
Sbjct: 318 DATTGQNGLRQAQVFAEVVDVTGVVLTKLDGSAKGGVVVSVQRELGVPVKLVGLGEGADD 377

Query: 298 LEPFVAKDFSAVIT 311
           L PF   DF   I 
Sbjct: 378 LAPFNPADFVDAIL 391


>gi|119025129|ref|YP_908974.1| FtsY signal recognition particle [Bifidobacterium adolescentis ATCC
           15703]
 gi|118764713|dbj|BAF38892.1| FtsY signal recognition particle [Bifidobacterium adolescentis ATCC
           15703]
          Length = 420

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 181/312 (58%), Gaps = 7/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + + +++L    + +     + + +I++  +L +   E++ED L+ +D+G   ++
Sbjct: 110 ETPESAGTRMQRLKARLSKSGNPFGKALFNILAKDQLSEADWEDVEDTLLLADVGAEASE 169

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNW--DFSHRPHVILVVGVN 120
           ++VEEL         S    +      +L+  +     +  N   + +++P VI++VGVN
Sbjct: 170 QLVEELRNDARIAGQSDPAEVRAALKDKLLKLVGTDTDRRLNANKEGANKPSVIIMVGVN 229

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT  GKLS+ +   G +VML A DTFR+AA DQL+ W  +     V S+  G+D A
Sbjct: 230 GTGKTTTAGKLSRLLVSEGKQVMLGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPA 289

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A+EA  +A+ +  DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDA
Sbjct: 290 SVAFEASAKAKEENADVLIIDTAGRLQNKANLMDELGKIRRVTEKNLP--VDEVLLVLDA 347

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL 
Sbjct: 348 TTGQNGMTQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLA 407

Query: 300 PFVAKDFSAVIT 311
           PF  + F   I 
Sbjct: 408 PFDPEGFVDGIL 419


>gi|302348911|ref|YP_003816549.1| Probable signal recognition particle protein [Acidilobus
           saccharovorans 345-15]
 gi|302329323|gb|ADL19518.1| Probable signal recognition particle protein [Acidilobus
           saccharovorans 345-15]
          Length = 304

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 160/310 (51%), Gaps = 17/310 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
              KL       +  +KE +    +S + L +   EEL   L+ +D+   VA+ IV EL 
Sbjct: 1   MFDKLRSALKGFAASIKEAVEKKELSEKDL-ETPLEELMINLVEADVAYDVAESIVMELR 59

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPL--------SKPFNWDFSHRPHVILVVGVNGV 122
           TK     V     + D V   +   +  L        S+      S  P+VI   GVNGV
Sbjct: 60  TKLIGSKVPRGINVEDYVLNSLKSYIATLFSNGIDLVSEAKRKCSSGLPYVITFFGVNGV 119

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I K++  +  +GL  ++AA DTFR+ A +QL+  A+R    F+    G+D A++A
Sbjct: 120 GKTTTIAKVAYMLKSSGLTPVIAAADTFRAGAQEQLRTHAERLGVAFIGGSYGADPASVA 179

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y A   A+ ++V  ++IDTAGR+H ++ LM+ + K++RV        P   + V+D+ TG
Sbjct: 180 YNAINYAKNRRVCAVLIDTAGRMHVDADLMSELKKIVRVAN------PDLRVLVVDSLTG 233

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            +A+ Q + F+   G   +I+TK+D   +GG  I +  T K PV ++GVG+  +DL PF 
Sbjct: 234 NDAVEQAKSFNENVGIDAIILTKLDADLKGGVAISVAATTKKPVIYVGVGQNYSDLRPFS 293

Query: 303 AKDFSAVITG 312
                + I G
Sbjct: 294 PNYIISAIFG 303


>gi|225351302|ref|ZP_03742325.1| hypothetical protein BIFPSEUDO_02894 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158758|gb|EEG72000.1| hypothetical protein BIFPSEUDO_02894 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 420

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 183/312 (58%), Gaps = 7/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + + +++L    + +     + + +I++  +L +   E++ED L+ +D+G   ++
Sbjct: 110 ETPEAAGTRMQRLKARLSKSGNPFGKALFNILAKDQLSEADWEDVEDTLLLADVGAEASE 169

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWD--FSHRPHVILVVGVN 120
           ++VEEL         S    +      +L+  +     +  N D   +++P+VI++VGVN
Sbjct: 170 QLVEELRNDARISGQSDPAEVRAALKDKLLKLVGTDTDRRLNADKEGANKPNVIIMVGVN 229

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT  GKLS+ +   G +VML A DTFR+AA DQL+ W  +     V S+  G+D A
Sbjct: 230 GTGKTTTAGKLSRLLVSEGKQVMLGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPA 289

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A+EA  +A+ + VDVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDA
Sbjct: 290 SVAFEASAKAKEENVDVLIIDTAGRLQNKANLMDELGKIRRVTEKNLP--VDEVLLVLDA 347

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL 
Sbjct: 348 TTGQNGMTQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLA 407

Query: 300 PFVAKDFSAVIT 311
           PF  + F   I 
Sbjct: 408 PFDPEGFVDGIL 419


>gi|219681749|ref|YP_002468135.1| signal recognition particle protein [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682304|ref|YP_002468688.1| signal recognition particle protein [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471450|ref|ZP_05635449.1| signal recognition particle protein [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219622037|gb|ACL30193.1| signal recognition particle protein [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624592|gb|ACL30747.1| signal recognition particle protein [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086703|gb|ADP66784.1| signal recognition particle protein [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 451

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 159/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  II+  RL ++ ++E + +    L+ +D+ ++V +K +E +  K   
Sbjct: 2   FNNLTQRLSDSLKKIINKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +++      Q  +  V   +   +   +   N+     P VILVVG+ G GKTT + KL
Sbjct: 62  HEINKSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIE-PPAVILVVGLQGSGKTTSLAKL 120

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K +L  + DT+R+AAI+QLKI +D+   DF  S+       +   A K A+
Sbjct: 121 GKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFESDKHHTPIEITKNAIKYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL+IDTAGRLH +  +M  I ++  + K +        L ++D+  GQ+A+   +
Sbjct: 181 LKLYDVLLIDTAGRLHIDKKMMNEIQQIQVISKAI------ETLLIVDSMMGQDAINMAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+     +G+I+TK DG +R G  + +      P+ F+G GE I  LEPF  +  +  I
Sbjct: 235 IFNNDLLISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMND 299


>gi|254455437|ref|ZP_05068866.1| signal recognition particle protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082439|gb|EDZ59865.1| signal recognition particle protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 452

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 149/322 (46%), Gaps = 28/322 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + K +E  + +  +  L++   +E    +   L+ +D+ + VA++ +E +  K   
Sbjct: 2   FENLTNKFEEIFSSLKKAPSLNEAQVDEGLRSIRQALLEADVTLEVAKEFIENVKPKVLG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++         V+  V + +  +L   +   N +    P  +++VG+ G GKTT   KL
Sbjct: 62  QEIIRSTSPGDMVVKIVYDELVNLLGETNNEINLNAV-PPVPMMLVGLQGSGKTTTTAKL 120

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K +  +   KVM+ + D +R AA +QL+   ++ +   +    G     +   A   A 
Sbjct: 121 AKYLETNKKKKVMMVSLDIYRPAAQEQLRSLGEQNNILTLPIIEGQQPTDICQRAISAAN 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               ++++ DTAGR   +  +M+ I ++  V+K      P     V D+ TGQ A    +
Sbjct: 181 LNGAEIILFDTAGRTQIDLQMMSEIKQIESVIK------PTETFLVADSLTGQVAAAVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      +G+I+T+ DG ARGG  + +     +P+ FLG+GE I++LE F     +  I
Sbjct: 235 EFKNTVSLSGIILTRADGDARGGAAVSMKYVSNVPIKFLGIGEKIDNLEVFHPDRIANRI 294

Query: 311 TGCL-----------DYGEEKI 321
            G             D GEE I
Sbjct: 295 LGMGDIVSLVEKAAQDLGEENI 316


>gi|145590107|ref|YP_001156704.1| signal recognition particle-docking protein FtsY [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048513|gb|ABP35140.1| signal recognition particle-docking protein FtsY [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 296

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 122/293 (41%), Positives = 171/293 (58%), Gaps = 10/293 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L++ +  +  + + D+   + LE+ LI+SD+G+   ++++ +L     ++  S    L  
Sbjct: 4   LRKTLGSLFKTSKTDEAWFDTLEESLIQSDVGLPTTEQLIIKLRKAAKSEKASSPEELQA 63

Query: 88  V-SELIHKMLMPLSKP----FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           +  + +  +L  L       F     H P V LVVGVNG GKTT IGKL K     G  V
Sbjct: 64  LLIQEVSTLLGSLEPNPNPLFTDQKIHIPEVWLVVGVNGAGKTTTIGKLCKLFQSQGKSV 123

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +LAAGDTFR+AA +QL+ W  R   D +  + G DAAA+A++A   A ++K D+LIIDTA
Sbjct: 124 LLAAGDTFRAAARNQLQEWGGRNQVDVITQD-GGDAAAVAHDAIHAANSRKSDILIIDTA 182

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL     LM  + K+ RV+ +  P APH  L VLD  TGQN L QV+ FHA  G TGLI
Sbjct: 183 GRLATQDHLMEELKKVKRVIGKALPGAPHHTLLVLDGNTGQNGLSQVKAFHAALGLTGLI 242

Query: 263 MTKMDGTARGGGLIPIVVTHK---IP-VYFLGVGEGINDLEPFVAKDFSAVIT 311
           +TK+DGTA+GG +  +  T K    P V  LG GEGI+DL PF A  +S+ + 
Sbjct: 243 VTKLDGTAKGGVICALAHTLKDEPKPAVLALGKGEGIDDLVPFTAHQYSSELF 295


>gi|239944613|ref|ZP_04696550.1| putative signal recognition particle protein [Streptomyces
           roseosporus NRRL 15998]
 gi|239991077|ref|ZP_04711741.1| putative signal recognition particle protein [Streptomyces
           roseosporus NRRL 11379]
          Length = 496

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 15/282 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLM 97
           D    E+   L+ +D+ + V +  +  +  +    +VS      Q+V+  V+E +  +L 
Sbjct: 7   DATAREIRIALLEADVALPVVRAFIANVKERARGVEVSQALNPAQQVVKIVNEELVAILG 66

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             ++   +     P VI++ G+ G GKTT+ GKL   +   G   +L A D  R  A++Q
Sbjct: 67  GETRRLRF-AKTAPTVIMLAGLQGAGKTTLAGKLGLWLKGQGHSPLLVACDLQRPNAVNQ 125

Query: 158 LKIWADRTSADFVCSEIGS---DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           L + A+R        E G+   D   +A ++ + A+AK  D++I+DTAGRL  +  LM  
Sbjct: 126 LSVVAERAGVAVYAPEPGNGVGDPVQVAKDSIEFAKAKVHDIVIVDTAGRLGIDQELMQQ 185

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
              +       D  +P  +L V+DA  GQ+A+   E F    G  G++++K+DG ARGG 
Sbjct: 186 AADI------RDAVSPDEILFVVDAMIGQDAVNTAEAFRDGVGFDGVVLSKLDGDARGGA 239

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
            + I       V F   GE + D + F     ++ I    D 
Sbjct: 240 ALSIAHVTGKQVMFASNGEKLEDFDAFHPDRMASRILDMGDL 281


>gi|148377845|ref|YP_001256721.1| Signal recognition particle protein [Mycoplasma agalactiae PG2]
 gi|148291891|emb|CAL59282.1| Signal Recognition Particle Protein [Mycoplasma agalactiae PG2]
          Length = 452

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 141/303 (46%), Gaps = 19/303 (6%)

Query: 24  TSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
              ++++ I  + S   + +     V  +++  L+ +D+ + V +  V  +  K  + ++
Sbjct: 5   LENRIQKSIKKMASKTVVSEEDILGVTRDIKMALLEADVNLKVVKDFVANVKEKALSANL 64

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                + Q ++  V   +  +L    +P   + + +P++I++ G+ G GKTT   K++  
Sbjct: 65  VGTLNAEQTMIKIVHNELVDILGKEVRPI--EITKKPYIIMMTGLQGSGKTTACAKIAYF 122

Query: 135 MSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +       K +L A D +R AA+ QL   A     D+        A  +  +A   A+  
Sbjct: 123 LKKKNQIEKPLLVAADIYRPAAVQQLVTLAKGIQVDYFEKGTNFSAQEIVKDALVFAKEN 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D++IIDTAGRL  +  LM  + ++  + +      P  V  V DA +GQ+ +     F
Sbjct: 183 KNDLIIIDTAGRLSIDEPLMNELWELKNISE------PQEVFFVADALSGQDIINVASTF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     TG ++TK+D  ARGG  +       +P+ F+G GE I++L+ F     +  I G
Sbjct: 237 NDRLKLTGSVITKLDSDARGGAALSFSKVLSLPIRFIGTGEKISNLDLFYPDRMADRILG 296

Query: 313 CLD 315
             D
Sbjct: 297 MGD 299


>gi|210622531|ref|ZP_03293224.1| hypothetical protein CLOHIR_01172 [Clostridium hiranonis DSM 13275]
 gi|210154166|gb|EEA85172.1| hypothetical protein CLOHIR_01172 [Clostridium hiranonis DSM 13275]
          Length = 450

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 121/311 (38%), Positives = 195/311 (62%), Gaps = 4/311 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +K  ++      +L +G       + + I +++ S   +D+ + E+LE++LI +D+GV  
Sbjct: 141 EKPVAKKEGLFARLKRGLTKAKQGITDRIDEVLKSYTSVDEELFEDLEEVLITADVGVNT 200

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             +I+++L  +  +K ++    + + + E++ ++L   +     D    P +I++VGVNG
Sbjct: 201 TMQIIDDLNDRVRSKKITDPMAVREELKEIVEEILSKGNS--KLDVEPSPAIIIMVGVNG 258

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ +    G KVMLAA DTFR+AA +QL IWA RT+ + V    G+D  A+
Sbjct: 259 VGKTTTIGKLALRYKSEGKKVMLAAADTFRAAATEQLDIWAKRTNTEIVKHHEGADPGAV 318

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A K A+A+K DVLI DTAGRLHN + LM  +GK+ +++ +  P A   VL V+DATT
Sbjct: 319 VFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKIFKIIDKEFPEAKKEVLLVVDATT 378

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F  VA  TG+++TK+DGTA+GG ++ +     +PV  +GVGE   DL+ F
Sbjct: 379 GQNAVVQAKSFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGEKAEDLQDF 438

Query: 302 VAKDFSAVITG 312
            A++F+A + G
Sbjct: 439 DAREFTAALFG 449


>gi|148298873|ref|NP_001091776.1| putative signal recognition particle 54 kDa protein [Bombyx mori]
 gi|111608119|gb|ABH10803.1| putative signal recognition particle 54 kDa protein [Bombyx mori]
          Length = 501

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +  +  +++ V     +++   L+ +D+ + + + + E +      
Sbjct: 3   LADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  KP+      +P+VI+ VG+ G GKTT   KL
Sbjct: 63  DEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQ-PVKGKPNVIMYVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K    +    F  S    D   +A       + 
Sbjct: 122 AYHYLRKNWKSCLVCADTFRAGAYDQVKQNCTKARIPFYGSYTEVDPVVIATTGVDMFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + ++++I+DT+GR      L   +  +   +K      P +++ V+DAT GQ    Q   
Sbjct: 182 QGLEMIIVDTSGRHKQEESLFEEMLAVATAIK------PDNIIFVMDATIGQACEAQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F   + 
Sbjct: 236 FKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFIKKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|157828091|ref|YP_001494333.1| signal recognition particle protein [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165932791|ref|YP_001649580.1| signal recognition particle protein [Rickettsia rickettsii str.
           Iowa]
 gi|157800572|gb|ABV75825.1| signal recognition particle protein [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165907878|gb|ABY72174.1| signal recognition particle, subunit FFH/SRP54 [Rickettsia
           rickettsii str. Iowa]
          Length = 449

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 152/309 (49%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       KL    + I++  ++D  +R+ +   L+ SD+ + V +  + E+  
Sbjct: 1   MFKTLTQNLTKIFDKLVS--SGILTEAQIDVAMRD-IRVALLESDVALPVIKDFIAEVKQ 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           K   ++V       Q ++  + E +  +L         + + +P V  L+VG+ G GKTT
Sbjct: 58  KALGQEVIKSVSPGQMIIKIIHEEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL+ ++ +   KV+L + DT+R AA +QL I A+    + +    G     +   A 
Sbjct: 118 ASGKLALRLRNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAI 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    DV+I DTAGR   +  +M     + ++++      P   L V+D+ TGQ+A+
Sbjct: 178 AEAKISAYDVVIYDTAGRTQIDKAMMEEALAIKKIVE------PTETLLVIDSMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     +GLI++++DG ++GG  + +    K P+ FL  GE + DLE F A+  
Sbjct: 232 VTASSFNEKLAISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERL 291

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 292 ASRILDMGD 300


>gi|15616997|ref|NP_240210.1| signal recognition particle protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11387174|sp|P57473|SRP54_BUCAI RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|25294407|pir||H84975 signal recognition particle protein [imported] - Buchnera sp.
           (strain APS)
 gi|10039062|dbj|BAB13096.1| signal recognition particle protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 451

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 159/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  I++  RL ++ ++E + +    L+ +D+ ++V +K +E +  K   
Sbjct: 2   FNNLTQRLSDSLKKILNKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +++      Q  +  V   +   +   +   N+     P VILVVG+ G GKTT + KL
Sbjct: 62  HEINKSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIE-PPAVILVVGLQGSGKTTSLAKL 120

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K +L  + DT+R+AAI+QLKI +D+   DF  S+       +   A K A+
Sbjct: 121 GKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFESDKHHTPIEITKNAIKYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL+IDTAGRLH +  +M  I ++  + K +        L ++D+  GQ+A+   +
Sbjct: 181 LKLYDVLLIDTAGRLHIDKKMMNEIQQIQVISKAI------ETLLIVDSMMGQDAINMAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+     +G+I+TK DG +R G  + +      P+ F+G GE I  LEPF  +  +  I
Sbjct: 235 IFNNDLLISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMND 299


>gi|15668272|ref|NP_247065.1| signal recognition particle protein Srp54 [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2500886|sp|Q57565|SRP54_METJA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|1590878|gb|AAB98081.1| signal recognition particle, subunit SRP54 [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 451

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 20/307 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L + +  +       ++L   V ++++  LI++D+ V +  K+ +E+  +   
Sbjct: 2   LDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALE 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +         + ++  V E + K+L   +K    +   + +VIL+VG+ G GKTT   KL
Sbjct: 62  EKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELN-PKKQNVILLVGIQGSGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQAQ 190
           ++ +   GLK  L A DT+R AA +QLK  A++        E  +     +  E  ++ +
Sbjct: 121 ARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K DVLIIDTAGR      L+  + ++  +        P  ++ V+D T GQ A  Q +
Sbjct: 181 --KADVLIIDTAGRHKEEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAK 232

Query: 251 MFHAVAG-TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            F    G    +I+TK+DG+A+GGG +  V   K P+ F+G+GEGI+DLEPF  K F + 
Sbjct: 233 AFKEAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISR 292

Query: 310 ITGCLDY 316
           + G  D 
Sbjct: 293 LLGMGDL 299


>gi|288905739|ref|YP_003430961.1| signal recognition particle (SRP)-docking protein [Streptococcus
           gallolyticus UCN34]
 gi|325978771|ref|YP_004288487.1| signal recognition particle-docking protein FtsY [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732465|emb|CBI14037.1| Putative signal recognition particle (SRP)-docking protein
           [Streptococcus gallolyticus UCN34]
 gi|325178699|emb|CBZ48743.1| signal recognition particle-docking protein FtsY [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 476

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 118/300 (39%), Positives = 172/300 (57%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +   +++ RR+D+   EELE++LI SD+GV VA ++ E+L  +
Sbjct: 173 EKYNRSLKKTRTGFSARLNAFLANFRRVDEEFFEELEEMLILSDVGVNVATQLTEDLRYE 232

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+             +F     V+L VGVNGVGKTT IGKL
Sbjct: 233 AKLENAKRADDLKRVIIEKLVDIYEKDGVFNEKINFQDDLTVMLFVGVNGVGKTTSIGKL 292

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K  + G KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 293 AYKYKNEGKKVMLVAADTFRAGAVAQLVEWGRRVGVPVVTGPEKADPASVVFDGMEKAVA 352

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VD+L+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 353 ENVDILLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLALDASTGQNALSQAKE 412

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+  F ++DF   + 
Sbjct: 413 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGEFDSEDFMRGLL 472


>gi|7799381|emb|CAB90997.1| signal recognition particle 54Kd homolog [Buchnera aphidicola]
          Length = 451

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 160/305 (52%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  II+  RL ++ ++E + +    L+ +D+ ++V +K +E +  K   
Sbjct: 2   FNNLTQRLSDSLKKIINKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +++      Q  +  V   +   +   +   N+     P VILVVG+ G GKTT + KL
Sbjct: 62  HEINKSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIE-PPAVILVVGLQGSGKTTSLAKL 120

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K +L  + DT+R+AAI+QLKI +D+   DF  S+  +    +   A K A+
Sbjct: 121 GKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFESDKHNTPIEITKNAIKYAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL+IDTAGRLH +  +M  I ++  + K +        L ++D+  GQ+A+   +
Sbjct: 181 LKLYDVLLIDTAGRLHIDKKMMNEIQQIQVISKAI------ETLLIVDSMMGQDAINMAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F+     +G+I+TK DG +R G  + +      P+ F+G GE I  LEPF  +  +  I
Sbjct: 235 IFNNDLLISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMND 299


>gi|154486490|ref|ZP_02027897.1| hypothetical protein BIFADO_00305 [Bifidobacterium adolescentis
           L2-32]
 gi|154084353|gb|EDN83398.1| hypothetical protein BIFADO_00305 [Bifidobacterium adolescentis
           L2-32]
          Length = 424

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 182/312 (58%), Gaps = 7/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + + +++L    + +     + + +I++  +L +   E++ED L+ +D+G   ++
Sbjct: 114 ETPEAAGTRMQRLKARLSKSGNPFGKALFNILAKDQLSEADWEDVEDTLLLADVGAEASE 173

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNW--DFSHRPHVILVVGVN 120
           ++VEEL         S    +      +L+  + +   +  N   + +++P VI++VGVN
Sbjct: 174 QLVEELRNDARIAGQSDPAEVRAALKDKLLKLVGIDTDRRLNANKEGANKPSVIIMVGVN 233

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT  GKLS+ +   G +VML A DTFR+AA DQL+ W  +     V S+  G+D A
Sbjct: 234 GTGKTTTAGKLSRLLVSEGKQVMLGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPA 293

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A+EA  +A+ +  DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL VLDA
Sbjct: 294 SVAFEASAKAKEENADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLP--VDEVLLVLDA 351

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL 
Sbjct: 352 TTGQNGMTQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLA 411

Query: 300 PFVAKDFSAVIT 311
           PF  + F   I 
Sbjct: 412 PFDPEGFVDGIL 423


>gi|320547226|ref|ZP_08041519.1| cell division protein FtsY [Streptococcus equinus ATCC 9812]
 gi|320448114|gb|EFW88864.1| cell division protein FtsY [Streptococcus equinus ATCC 9812]
          Length = 440

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 118/300 (39%), Positives = 172/300 (57%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +   +++ RR+D+   EELE++LI SD+GV VA ++ E+L  +
Sbjct: 137 EKYNRSLKKTRTGFSARLNTFLANFRRVDEDFFEELEEMLILSDVGVNVATQLTEDLRYE 196

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+             +F     V+L VGVNGVGKTT IGKL
Sbjct: 197 AKLENAKKADDLKRVIIEKLVEIYEKDGVFNEKINFQDDLTVMLFVGVNGVGKTTSIGKL 256

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K  + G KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 257 AYKYKNEGKKVMLVAADTFRAGAVAQLAEWGRRVGVPVVTGPEKADPASVVFDGMERAVA 316

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 317 ENVDVLLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLALDASTGQNALSQAKE 376

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE ++D+  F ++DF   + 
Sbjct: 377 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKMDDIGEFDSEDFIRGLL 436


>gi|292659708|pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
           Pa
          Length = 433

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 144/303 (47%), Gaps = 14/303 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           G  +    +++ +T      +  D   ++L+  LI SD+ V +   +  ++  +   +  
Sbjct: 2   GLENIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKP 61

Query: 80  S-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                  +  +  V + + K+     +P N + +  P +I++VGV G GKTT  GKL+  
Sbjct: 62  PSVLERKEWFISIVYDELSKLFGGDKEP-NVNPTKLPFIIMLVGVQGSGKTTTAGKLAYF 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G KV L A D +R AA DQL    ++            +   +A +        K+
Sbjct: 121 YKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKM 180

Query: 195 DVLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           D++I+DTAGR      + L+  + +M  VLK      P  V+ V+DA+ GQ A      F
Sbjct: 181 DIIIVDTAGRHGYGEETKLLEEMKEMYDVLK------PDDVILVIDASIGQKAYDLASRF 234

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           H  +    +I+TKMDGTA+GGG +  VV     + F+G GE I++LE F AK F + I G
Sbjct: 235 HQASPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILG 294

Query: 313 CLD 315
             D
Sbjct: 295 MGD 297


>gi|226496107|ref|NP_001142208.1| hypothetical protein LOC100274376 [Zea mays]
 gi|194702286|gb|ACF85227.1| unknown [Zea mays]
 gi|194707600|gb|ACF87884.1| unknown [Zea mays]
          Length = 496

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 143/306 (46%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLT---- 72
            A     +   +  + ++  +D+ V  E    +   L+++D+   + + +   +      
Sbjct: 3   LAQLGGSISRALAQMSNATVIDEKVLNECLNEISRALLQADVQFKMVRDMQANIKRIVNL 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A   + +R++   V   +  ML P  KP       +P V++ VG+ G GKTT   K 
Sbjct: 63  EALAAGTNKRRIMQQAVFTELCTMLDP-GKPSFTPKKGKPSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + 
Sbjct: 122 AYYHQKKGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE I++ E F  K F + + 
Sbjct: 236 FKQSVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLL 295

Query: 312 GCLDYG 317
           G  D+ 
Sbjct: 296 GMGDWA 301


>gi|329943003|ref|ZP_08291777.1| signal recognition particle protein [Chlamydophila psittaci Cal10]
 gi|332287585|ref|YP_004422486.1| signal recognition particle protein [Chlamydophila psittaci 6BC]
 gi|313848159|emb|CBY17160.1| signal recognition particle protein [Chlamydophila psittaci RD1]
 gi|325507143|gb|ADZ18781.1| signal recognition particle protein [Chlamydophila psittaci 6BC]
 gi|328814550|gb|EGF84540.1| signal recognition particle protein [Chlamydophila psittaci Cal10]
 gi|328914836|gb|AEB55669.1| signal recognition particle protein [Chlamydophila psittaci 6BC]
          Length = 447

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 150/305 (49%), Gaps = 21/305 (6%)

Query: 22  ASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYAK 77
           +S S KL    + +++SRR+ ++ + E + +    L+ +D+   V +  + ++  K   +
Sbjct: 3   SSLSQKLSSIFSSLVASRRITEENISEAIREVRLALLDADVNYHVVKSFIAKVKEKVLGE 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q+ +  + E + ++L       + + S  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVWKHVSPGQQFIRYLHEELTELLGD---KTDLNTSGNPGVILLCGLQGTGKTTTCAKLA 119

Query: 133 KKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
             +       KV++   D  R AA++QL+    +T A+   SE G D   +  +A   A+
Sbjct: 120 AYVLEERKAKKVLVVPCDLKRFAAVEQLRNLISKTKAELYNSE-GQDPVKVVSQALDYAK 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D+++IDTAGRLH + +LM  +  + +V            L V++   GQ+A+   +
Sbjct: 179 QEGHDLVLIDTAGRLHVDEVLMEELASIQKVSHAC------ERLFVMNLAMGQDAVSTAK 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I++  DG AR G ++ +      P+ F G GE I DL PF A+  +  I
Sbjct: 233 AFDNYLDLTGVIISMTDGDARAGAVLSMKSLLGKPIKFEGCGERIQDLRPFNAESMADRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|296536512|ref|ZP_06898602.1| signal recognition particle protein [Roseomonas cervicalis ATCC
           49957]
 gi|296263168|gb|EFH09703.1| signal recognition particle protein [Roseomonas cervicalis ATCC
           49957]
          Length = 461

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 149/309 (48%), Gaps = 20/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL      +     L +D V E L +    L+ +D+ + V + +V ++  +   
Sbjct: 2   FEALSGKLNGVFDRLRRRGALTEDNVNEALREVRIALLEADVALPVVKDLVNKVRERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNGVGKTTV 127
           ++V       Q+V+  V++ + + L               +  P  IL++G+ G GKTT 
Sbjct: 62  QEVIRSVSPAQQVIKIVNDCLVEALGGGEGVEQTPGLNLNAAAPIAILMIGLQGSGKTTT 121

Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GK++ ++      KV+LA+ D  R AA  QL+  A +     +    G     +A  A 
Sbjct: 122 SGKIALRLRARDKKKVLLASLDVHRPAAQLQLETLAKQAGVASLPIIQGQTPLQIAARAM 181

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+ +  DV+I+DTAGRL  +  LMA + ++    K      PH  L V+DA TGQ+A+
Sbjct: 182 QVARGELYDVVILDTAGRLSIDEALMAEVAEVKAATK------PHESLLVVDAMTGQDAV 235

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
               +F+   G TG++MT++DG ARGG  + +      P+  LG GE ++ LE F     
Sbjct: 236 NTARIFNERVGLTGIVMTRVDGDARGGAALSMRAVTGAPIKLLGAGEKLDALEDFHPDRI 295

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 296 AGRILGMGD 304


>gi|153816161|ref|ZP_01968829.1| hypothetical protein RUMTOR_02409 [Ruminococcus torques ATCC 27756]
 gi|317500481|ref|ZP_07958705.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331089418|ref|ZP_08338317.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145846496|gb|EDK23414.1| hypothetical protein RUMTOR_02409 [Ruminococcus torques ATCC 27756]
 gi|316898236|gb|EFV20283.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330404786|gb|EGG84324.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 312

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 135/315 (42%), Positives = 188/315 (59%), Gaps = 6/315 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            E   + R+L  G A T   +  G+  I     ++D+   EELE+ LI  D+GV    +I
Sbjct: 2   EEKKGFFRRLVSGLAKTRDNIVSGMDSIFHGFSKIDEEFYEELEETLIMGDLGVHSTMEI 61

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKT 125
           +E+L  K   K+  ++  +     LI  +   +      ++F +R  V+ V+GVNGVGKT
Sbjct: 62  LEDLRAKV--KERHIKEPIECRQLLIDSIREQMDVGETAYEFENRTSVVFVIGVNGVGKT 119

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+ K+   G KV+LAA DTFR+AA +QL+ WA+R  AD +  + G+D AA+ Y+A
Sbjct: 120 TTIGKLAGKLKSQGKKVVLAAADTFRAAAGEQLREWANRADADMIGGQEGADPAAVIYDA 179

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+A+  DVL+ DTAGRLHN   LM  + K+ RV+ R  P A    L VLDATTGQNA
Sbjct: 180 VAAAKARHADVLLCDTAGRLHNKKNLMEELKKINRVIDREYPEAFRETLVVLDATTGQNA 239

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q + F+ VA  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I+DL+ F A +
Sbjct: 240 LAQAKEFNEVADITGVILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIDDLQKFDADE 299

Query: 306 FSAVITGCLDYGEEK 320
           F   +    D  EEK
Sbjct: 300 FVNALFYRED--EEK 312


>gi|187778956|ref|ZP_02995429.1| hypothetical protein CLOSPO_02551 [Clostridium sporogenes ATCC
           15579]
 gi|187772581|gb|EDU36383.1| hypothetical protein CLOSPO_02551 [Clostridium sporogenes ATCC
           15579]
          Length = 303

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 121/301 (40%), Positives = 186/301 (61%), Gaps = 4/301 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  KL +G   T     + I+ +++ +  +D+ + EELE++L+ +DIGV  + KI++ L 
Sbjct: 5   FFDKLKEGLTKTKDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKIIDRLR 64

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +     +   +  +I ++L         D +  P V+LV+GVNGVGKTT IGK
Sbjct: 65  ERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITPDTT--PKVMLVIGVNGVGKTTSIGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +S K+ D G KV++AA DTFR+AAIDQL++W+ R   D +  + GSD  A+ ++A + A+
Sbjct: 123 VSAKLKDQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPGAVVFDAVQAAK 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++K DVLI DTAGRLHN   LM  + K+ ++L+R    A    L VLDATTGQNA+ Q +
Sbjct: 183 SRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDATTGQNAVIQAK 242

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F +     G+I+TK+DGTA+GG +I I     IPV  +GVGEGI+DL+ F  ++F   +
Sbjct: 243 EFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIDDLQEFNPEEFVEAL 302

Query: 311 T 311
            
Sbjct: 303 F 303


>gi|260655328|ref|ZP_05860816.1| signal recognition particle-docking protein FtsY [Jonquetella
           anthropi E3_33 E1]
 gi|260629776|gb|EEX47970.1| signal recognition particle-docking protein FtsY [Jonquetella
           anthropi E3_33 E1]
          Length = 309

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 102/304 (33%), Positives = 159/304 (52%), Gaps = 6/304 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L    +    +    +T + +   +     ++LE+ LI  D GV  A+++V  L 
Sbjct: 5   GFFDRL----SDVRRRWSGSLTRLFTRSDITPQFWDDLEETLIVGDAGVDTAEELVASLK 60

Query: 72  TKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                + +     L +     L+ ++            +   +V ++VGVNG GKTT  G
Sbjct: 61  ETGRREGIKRADELLEAFARLLVARLSAADGTGQPLRLASGLNVCVMVGVNGSGKTTTAG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KVM+AA DTFR+ A +QL++W +R     V  + GSD A++A++    A
Sbjct: 121 KLACQFVKAGHKVMMAASDTFRAGASEQLQVWGERCGVRVVAQKPGSDPASVAFDGITAA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           QA    +LI+DTAGRL +   LMA +GK+ RV++R         L VLDA  GQNA  Q 
Sbjct: 181 QAAGARLLIVDTAGRLQSRQNLMAELGKIWRVVERAVGKDHVETLIVLDAMIGQNAFVQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F  VA  TG ++ K D TA+GG ++ I     +PV ++GVGEG+ DL  F  + F   
Sbjct: 241 DLFGQVAPLTGAVLAKYDNTAKGGVVLSITEKLGVPVRYVGVGEGVADLALFEPESFVRG 300

Query: 310 ITGC 313
           + G 
Sbjct: 301 LLGL 304


>gi|224532274|ref|ZP_03672906.1| signal recognition particle protein [Borrelia valaisiana VS116]
 gi|224511739|gb|EEF82145.1| signal recognition particle protein [Borrelia valaisiana VS116]
          Length = 444

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S     K  I  +     ++D       E +++ L+ +D+ + V ++ +  ++ +   
Sbjct: 2   LESLGSNFKNFINYLSGKSTINDKNIAEAIEIIKNSLVDADVNLRVVRRFLNSIIEESRG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V        + +  V++ + K L   +   + +  ++   IL+VG+ G GKTT   KL
Sbjct: 62  VKVLRGIDPKSQFIKIVNDNLVKFLGGKNYELSLNPINKQSYILMVGLQGSGKTTTCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S ++     KV+L A DTFR+AAI+QLKI   +        E   D   +   + K A++
Sbjct: 122 SLRLKKENRKVLLVAADTFRAAAIEQLKILGSQIGVPVFSLEGEKDPIKIVKASMKVAES 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D +I+DT GRL   S+L+  I K+  +L+      P   + VLD+ TGQ A+   + 
Sbjct: 182 EFFDSVIVDTRGRLEVESLLVEEIKKIKEILQ------PTETILVLDSMTGQVAVNIAKE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I +K D   RGG ++       +P+ F+GVGE I DL+ F  +  ++ I 
Sbjct: 236 FNENVGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKFIGVGEKIEDLDSFYPERIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|291276573|ref|YP_003516345.1| signal recognition particle protein [Helicobacter mustelae 12198]
 gi|290963767|emb|CBG39602.1| signal recognition particle protein [Helicobacter mustelae 12198]
          Length = 445

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 141/298 (47%), Gaps = 12/298 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L     +I+   R +D         +EL+  L+++D+   V ++I++++ +K  A  +
Sbjct: 3   DTLGNTFRNIVGKIRFNDDENSLNRALDELKKALLKNDVHHKVTKEIIQQVQSKTKALGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q  L  + E I  +L           S  P +IL+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQNFLDSLQEAILSILQSSKNYGFVFASKPPTIILMTGLQGSGKTTTSAKLANYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+LAA D  R AA+ QL+   ++   +    +       +A  A ++A   + DVLII
Sbjct: 123 KKVLLAACDLQRLAAVKQLQSLGEKIEVEVFHVQDAKSPIEVAKRAKEKAMGHQYDVLII 182

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL  +  LM  +  +   +       P  +  V D+ +GQ+ +R  ++F+     +
Sbjct: 183 DTAGRLAIDDTLMQELTDIKAAIN------PDEIFYVADSLSGQDGVRTADLFNQKLDVS 236

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           G+I++K D  ++GG  + I     +P+ F+G GE I D + F+     + + G  D  
Sbjct: 237 GVILSKFDSDSKGGIALSIAYQIGLPLRFIGTGEKIPDFDIFLPDRIVSRLMGAGDIA 294


>gi|302335830|ref|YP_003801037.1| signal recognition particle-docking protein FtsY [Olsenella uli DSM
           7084]
 gi|301319670|gb|ADK68157.1| signal recognition particle-docking protein FtsY [Olsenella uli DSM
           7084]
          Length = 301

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 170/305 (55%), Gaps = 6/305 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +    +L  G   +   L E          +D+G  E+LED L+  D+G  VA  + ++L
Sbjct: 1   MGLRERLRAGLTRSREALSEVF---YMGGEVDEGFWEDLEDRLVMGDMGAEVAMGVTDDL 57

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +   ++++    L     L  ++      P    F   P  ++ VG+NG GKTT +GK
Sbjct: 58  REQAARENLTTAPRLR--RALAERLAREFCVPERDPFEDLPSCVVFVGINGAGKTTTVGK 115

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G   ++   DTFR+AAI+QL++W +R+  + V  E G+D A++ Y+  ++A+
Sbjct: 116 LAGVARREGTSCLIGGADTFRAAAIEQLQVWGERSGTEVVTRERGADPASVCYDVIERAE 175

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +   ++++DTAGRLH++  LM  + K++ V +R     P SV+ V+DATTGQN L Q +
Sbjct: 176 REGTQLVLVDTAGRLHSSPELMRELAKVVGVTRRRSST-PVSVVLVIDATTGQNGLAQAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DGTA+GG  + I     +P+Y +GVGEGI+DL+ F A +FS  +
Sbjct: 235 EFNDALDLDGIVVTKLDGTAKGGIAVAISHNLSLPIYRIGVGEGIDDLQAFDALEFSRAL 294

Query: 311 TGCLD 315
            G  +
Sbjct: 295 VGDGE 299


>gi|288817542|ref|YP_003431889.1| signal recognition particle GTPase [Hydrogenobacter thermophilus
           TK-6]
 gi|288786941|dbj|BAI68688.1| signal recognition particle GTPase [Hydrogenobacter thermophilus
           TK-6]
 gi|308751145|gb|ADO44628.1| signal recognition particle protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 436

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 150/305 (49%), Gaps = 22/305 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               + +  + ++ +   R+L +     +  ++   L+ +D+   V +  ++++  +   
Sbjct: 2   LDLLTERFSKSLSKLRGVRKLTEKQVNDILRDIRMALLEADVDYDVVKSFLKKVRDRAIN 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +D+         V+  V E +  +L             +  V++ VG+ G GKTT IGKL
Sbjct: 62  EDIKNKLSPADSVVLTVYEELTSILGGE------KADLKRGVVIFVGLQGTGKTTTIGKL 115

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  + +   KV +++ D  R AA+ QL+  A++    +   +       +A +A ++A+ 
Sbjct: 116 ANFLKNQSFKVAVSSTDVRRPAAMLQLQRLAEKVGVPYYSFDEA-SPVEIATKALERAKK 174

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VD L+IDTAGRLH +  LM  + ++   +K      P  V+ V DA  GQ ALR ++ 
Sbjct: 175 EGVDYLLIDTAGRLHIDEELMEELKRIKEAVK------PSEVIYVADAMQGQEALRALKA 228

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     TG+I+TKMDG ARGG  + +     +P+ F+GVGE + D+E F     +  I 
Sbjct: 229 FHESITLTGVILTKMDGDARGGVALSVKEAIGVPIKFVGVGEKLEDIEIFYPDRIAQRIL 288

Query: 312 GCLDY 316
           G  D 
Sbjct: 289 GLGDL 293


>gi|313678330|ref|YP_004056070.1| signal recognition particle protein [Mycoplasma bovis PG45]
 gi|312950595|gb|ADR25190.1| signal recognition particle protein [Mycoplasma bovis PG45]
          Length = 452

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 141/303 (46%), Gaps = 19/303 (6%)

Query: 24  TSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
              ++++ I  + S   + +     V  +++  L+ +D+ + V +  V  +  K  + ++
Sbjct: 5   LENRIQKSIKKMASKTVVSEEDILGVARDIKMALLEADVNLKVVKDFVANVKEKALSANL 64

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                + Q ++  V   +  +L    +P   + + +P++I++ G+ G GKTT   K++  
Sbjct: 65  VGTLNAEQTMIKIVHNELVDILGKEVRPI--EITKKPYIIMMTGLQGSGKTTACAKIAHF 122

Query: 135 MSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +       K +L A D +R AA+ QL   A     D+        A  +  E+   A+  
Sbjct: 123 LKKKNQIEKPLLVAADIYRPAAVQQLVTLAKGIQVDYFEKGTNVSAQQIVKESLTFAKEN 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D++IIDTAGRL  +  LM  + ++  + +      P  +  V DA +GQ+ +     F
Sbjct: 183 KNDLIIIDTAGRLSIDEPLMNELWELKNICE------PQEIFFVADALSGQDIINVANTF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     TG ++TK+D  ARGG  + +     +P+ F+G GE I +L+ F     +  I G
Sbjct: 237 NNRLKLTGSVITKLDSDARGGAALSLSKVLSLPIRFIGTGEKIGNLDLFYPDRMADRILG 296

Query: 313 CLD 315
             D
Sbjct: 297 MGD 299


>gi|145324887|ref|NP_001077690.1| signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)
           [Arabidopsis thaliana]
 gi|332194243|gb|AEE32364.1| signal recognition particle subunit SRP54 [Arabidopsis thaliana]
          Length = 431

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 138/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    ++   I  + +   +D+        E+   L++SD+   + +++   +      
Sbjct: 3   LAELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +D++       + E      + KML P  KP       +  V++ VG+ G GKTT   K 
Sbjct: 63  EDLAAGHNKRRIIEQAIFSELCKMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S   SD   +A E     + 
Sbjct: 122 AYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F  K F + + 
Sbjct: 236 FKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|84498332|ref|ZP_00997129.1| putative prokaryotic docking protein [Janibacter sp. HTCC2649]
 gi|84381832|gb|EAP97715.1| putative prokaryotic docking protein [Janibacter sp. HTCC2649]
          Length = 405

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 185/315 (58%), Gaps = 6/315 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           + + +      + +++L    A ++  L +G+  ++S   LD+   E++ED L+ +D+GV
Sbjct: 92  VPDVERPESPQTRLQRLRARLARSNTALGKGLLALLSRGDLDEQAWEDVEDTLLTADLGV 151

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKP--FNWDFSHRPHVILVV 117
               ++V+ L TK      + +  +   + E +  ++ P       +     RP VI+VV
Sbjct: 152 EATTELVDALRTKVRVHGTADEATVRGWLREELIALVDPSMDRSIASSRVDGRPAVIVVV 211

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT +GKL++ +      V+L A DTFR+AA DQL+ W +R     + S+  G+
Sbjct: 212 GVNGTGKTTTVGKLARVLVAEDKDVVLGAADTFRAAAADQLQTWGERVGVPTIRSDRDGA 271

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+A++A K A   + DV+IIDTAGRLHN   LM  +GK+ RV+++  P     VL V
Sbjct: 272 DPAAVAFDAVKGAAELESDVVIIDTAGRLHNKVGLMDELGKVKRVIEKQSP--IDEVLLV 329

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN LRQ E+F  V G TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +
Sbjct: 330 LDATTGQNGLRQAEVFSEVVGITGIVLTKLDGTAKGGIVVAVQRKLGVPVKLIGLGEGPD 389

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF  + F   I 
Sbjct: 390 DLAPFDPEGFVDAII 404


>gi|309358215|emb|CAP34405.2| hypothetical protein CBG_16436 [Caenorhabditis briggsae AF16]
          Length = 496

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 137/306 (44%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELL----- 71
            A    K++  I  +  +  +++     + +E+   LI SD+ + + +++ + +      
Sbjct: 3   LADLGRKIRNAIGKLGQNTVINEEELDLMLKEVCTALIESDVHIRLVKQLKDNVKNAINF 62

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +        + +   V   + K++ P   PF      R +V + VG+ G GKTT   K+
Sbjct: 63  EEIVGGANKRRYIQKTVFNELLKLVDPGVTPFTPTKGKR-NVFMFVGLQGSGKTTTCSKM 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++   
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFTK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR    + L   + ++   +       P +V+ V+DA+ GQ    Q   
Sbjct: 182 EGFEIIIVDTSGRHKQEASLFEEMLQVSNAVT------PDNVVFVMDASIGQACEAQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+D  A+GGG +  V   K PV F+G GE I+D E F  K F   + 
Sbjct: 236 FSQTVDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDIA 301


>gi|147733507|sp|Q4UKH4|SRP54_RICFE RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
          Length = 449

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/309 (26%), Positives = 150/309 (48%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       KL    + I++  ++D  +R+ +   L+ SD+ + V +  + E+  
Sbjct: 1   MFKTLTQNLTKIFDKLVS--SGILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQ 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           K   ++V       Q ++  + E +  +L         + + +P V  L+VG+ G GKTT
Sbjct: 58  KALGQEVIKSVSPGQMIIKIIHEEMINLLASSESETKLNLNSKPPVNFLMVGLQGSGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+ ++ +   KV+L + DT+R AA +QL I A+    + +    G     +   A 
Sbjct: 118 ASSKLALRLKNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAI 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+     V+I DTAGR   +  +M     + ++++      P   L V+D+ TGQ+A+
Sbjct: 178 AEAKISAYGVVIYDTAGRTQIDKEMMEEALAIKKIVE------PTETLLVIDSMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     +GLI++++DG ++GG  + +    K P+ FL  GE + DLE F A+  
Sbjct: 232 VTANSFNEKLEISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGEKLTDLEEFDAERL 291

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 292 ASRILDMGD 300


>gi|289805648|ref|ZP_06536277.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 242

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 108/243 (44%), Positives = 158/243 (65%), Gaps = 2/243 (0%)

Query: 74  RYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              K +     LY  + + + ++L  + +P N +    P VIL+VGVNGVGKTT IGKL+
Sbjct: 1   ASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGVGKTTTIGKLA 59

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           ++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A+
Sbjct: 60  RQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKAR 119

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            VDVLI DTAGRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++F
Sbjct: 120 NVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKLF 179

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           H   G TG+ +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF   +  
Sbjct: 180 HEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFA 239

Query: 313 CLD 315
             D
Sbjct: 240 RED 242


>gi|225567886|ref|ZP_03776911.1| hypothetical protein CLOHYLEM_03959 [Clostridium hylemonae DSM
           15053]
 gi|225163287|gb|EEG75906.1| hypothetical protein CLOHYLEM_03959 [Clostridium hylemonae DSM
           15053]
          Length = 325

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 131/310 (42%), Positives = 185/310 (59%), Gaps = 4/310 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           ++ + E   + R+L  G   T   +  G+ +I S   R+D+   EELE++LI  D+GV  
Sbjct: 11  KQESGEKQGFFRRLVSGLTKTRDNIISGMDNIFSGFSRIDEEFYEELEEVLIMGDLGVQA 70

Query: 63  AQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I+E+L  K  A+ +         + + I + +        ++F  R  V++V+GVNG
Sbjct: 71  TDNILEDLKEKVRARHIKEPSECRQLLIDSIKEQMDIGETA--YEFEDRTSVVMVIGVNG 128

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ K+     KV+LAA DTFR+AA +QLK WADR  A+ +  + GSD A++
Sbjct: 129 VGKTTTIGKLAGKLRSRHKKVVLAAADTFRAAAGEQLKEWADRAQAELIGGQEGSDPASV 188

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+A   A+A+  DVL+ DTAGRLHN   LM  + KM R++ R  P A    L VLDATT
Sbjct: 189 VYDAVAAAKARHADVLLCDTAGRLHNKKNLMEELKKMNRIIDREFPDAYRETLVVLDATT 248

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + F+ VA  TG+I+TKMDGTA+GG  + I     IPV ++GVGE I DL+ F
Sbjct: 249 GQNALMQAKEFNEVADITGIILTKMDGTAKGGIAVAIQAELGIPVKYIGVGETIEDLQKF 308

Query: 302 VAKDFSAVIT 311
            A +F   + 
Sbjct: 309 DADEFVNALF 318


>gi|226430|prf||1512311A SRP protein 54kD
          Length = 504

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ ++  + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEAEFNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L     ++   ++      P +++ V+D+  GQ    Q + 
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEERLQVSNAIQ------PDNIVYVMDSDIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 236 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|306831836|ref|ZP_07464992.1| cell division protein FtsY [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426034|gb|EFM29150.1| cell division protein FtsY [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 488

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 118/300 (39%), Positives = 172/300 (57%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +   +++ RR+D+   EELE++LI SD+GV VA ++ E+L  +
Sbjct: 185 EKYNRSLKKTRTGFSARLNAFLANFRRVDEEFFEELEEMLILSDVGVNVATQLTEDLRYE 244

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+             +F     V+L VGVNGVGKTT IGKL
Sbjct: 245 AKLENAKRADDLKRVIIEKLVDIYEKDGVFNEKINFQDDLTVMLFVGVNGVGKTTSIGKL 304

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K  + G KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 305 AYKYKNEGKKVMLVAADTFRAGAVAQLVEWGRRVGVPVVTGPEKADPASVVFDGMEKAVA 364

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VD+L+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 365 ENVDILLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLALDASTGQNALSQAKE 424

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+  F ++DF   + 
Sbjct: 425 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGEFDSEDFMRGLL 484


>gi|212374985|pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
           Recognition Particle Receptor From The Archaeon
           Pyrococcus Furiosus
          Length = 328

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 147/285 (51%), Gaps = 15/285 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHK 94
           I  + +D    +ELE  L+ +D+ + V   + E++  K   K V +       + E + +
Sbjct: 47  IKEKDVDKA-LDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKE 105

Query: 95  MLMPLSKPF-------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
            +  + +             + +P+VI  VG NG GKTT I KL+  + + G  V++AA 
Sbjct: 106 AVSEILETSRRIDLIEEIRKAEKPYVIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+ AI+QL+  A R     +    G+D AA+AY+A + A+A+ +DV++IDTAGR   
Sbjct: 166 DTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSET 225

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           N  L     K+ RV K      P+ V+ V DA  G   + Q   F+      G+I+TK+D
Sbjct: 226 NRNLXDEXKKIARVTK------PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLD 279

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             ARGG  + I      P+ F+GVG+G +DL PF  + F   I G
Sbjct: 280 ADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFG 324


>gi|15895031|ref|NP_348380.1| Signal recognition particle GTPase Ffh [Clostridium acetobutylicum
           ATCC 824]
 gi|15024723|gb|AAK79720.1|AE007684_8 Signal recognition particle GTPase Ffh [Clostridium acetobutylicum
           ATCC 824]
 gi|325509168|gb|ADZ20804.1| Signal recognition particle GTPase Ffh [Clostridium acetobutylicum
           EA 2018]
          Length = 449

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   S KL+  +  +    +L +  +++ + +    L+ +D+   + +  V+ +  K  
Sbjct: 2   AFEGLSTKLQAAMKKLRGKGKLSEKDIKDAMREVKLALLEADVNYKIVKNFVKVVGEKCL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+V+  V+E +  ++        ++ +    VI+ VG+ G GKTT+ GK
Sbjct: 62  GNEVMESLTPGQQVIKIVNEELTNLMGKEESKIEFEENGI-TVIMAVGLQGAGKTTMCGK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS  +     K +L A D +R AAI QL++                +   ++  A K A+
Sbjct: 121 LSLSLKKKNKKPLLVACDIYRPAAIKQLEVVGKSIDVPVFSMGDKVNPVDISKAAMKHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              ++V+IIDTAGRLH +  LM  +  +   +       P  +L V+D+ TGQ+A+   E
Sbjct: 181 ENGLNVVIIDTAGRLHIDDQLMNELENIKSEVN------PKEILLVVDSMTGQDAVNVAE 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DG  RGG  + I      P+ ++G+GE +ND+E F     ++ I
Sbjct: 235 SFDNKLELTGVVLTKLDGDTRGGAALSIREMTGKPIKYVGLGEKMNDIEIFHPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|320096199|ref|ZP_08027787.1| signal recognition particle protein [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319976864|gb|EFW08619.1| signal recognition particle protein [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 536

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 145/309 (46%), Gaps = 22/309 (7%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            +LT+ F     +       +++   +D  V  E+   LI +D+ + V ++    +  K 
Sbjct: 7   DRLTESFRRLRSR------GVLTESDVDQAV-SEIRRALIDADVALPVVRQFTTRVREKA 59

Query: 75  YAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           Y    S      Q+V+  V   + ++L   ++   +     P V ++ G+ G GKTT+ G
Sbjct: 60  YGAARSKALNPGQQVVSIVHSELVEILGGQTRELVF-AERGPTVFMLAGLQGAGKTTLAG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS---DAAALAYEAF 186
           KL K + + G  VML A D  R  A+ QL++  +R        E G+   D   +A    
Sbjct: 119 KLGKWLREEGKTVMLVASDLQRPNAVQQLQVVGERAGVKVWAPEPGNGVGDPVEVARSGV 178

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+   ++V+I+DTAGRL  +  +M         +   D  +PH ++ VLDA  GQ+A+
Sbjct: 179 EFARQSGINVVIVDTAGRLGVDQEMMDQ------AIAIRDAVSPHEIMFVLDAMVGQDAV 232

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F    G TG++++K+DG ARGG  + +      P+ F   GEG++D E F A   
Sbjct: 233 STSTAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGAPILFASTGEGLDDFERFHADRM 292

Query: 307 SAVITGCLD 315
           +  I    D
Sbjct: 293 AGRILDMGD 301


>gi|307244289|ref|ZP_07526404.1| signal recognition particle-docking protein FtsY
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492439|gb|EFM64477.1| signal recognition particle-docking protein FtsY
           [Peptostreptococcus stomatis DSM 17678]
          Length = 431

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 190/313 (60%), Gaps = 4/313 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S+Q+   E +    +L  G + T   +   I  ++ S  ++D+ + EELE++LI +D+GV
Sbjct: 121 SDQEEGQEKMGIFARLLAGLSKTKDNITGRIDSLLKSYTKIDEDLLEELEEILITADVGV 180

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               +I++ L      + V     + D+  E++  +L   +   + D    P VI++VGV
Sbjct: 181 TTTMEIIDRLRDMIKERGVKDPIEVRDLLKEIVASILNEGNSGLDLD--PGPAVIVMVGV 238

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G KVMLAA DTFR+AA +QL IWA R   D +    G+D  
Sbjct: 239 NGVGKTTTIGKLAQRYKKDGKKVMLAAADTFRAAASEQLDIWAKRVDVDIIKHHEGADPG 298

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A K +QA+KVD+LI DTAGRLHN + LM  +GK+ +++ R  P A   VL V+DA
Sbjct: 299 AVVFDAIKASQARKVDLLICDTAGRLHNKANLMNELGKIFKIIDREYPEAKKEVLLVVDA 358

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNA+ Q + F  VA  TG+++TK+DGTA+GG ++ +     +PV  +GVGE   DL+
Sbjct: 359 TTGQNAVSQAKTFKEVANITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGERAEDLQ 418

Query: 300 PFVAKDFSAVITG 312
            F A  F+  I G
Sbjct: 419 SFDADSFTDAIFG 431


>gi|315187115|gb|EFU20872.1| signal recognition particle-docking protein FtsY [Spirochaeta
           thermophila DSM 6578]
          Length = 289

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 108/287 (37%), Positives = 163/287 (56%), Gaps = 6/287 (2%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L + +  +    R D+   EE EDLLI +D+G   A ++VEE+  +   + V     +  
Sbjct: 4   LMDRLRSLWGGARFDEAFWEEFEDLLIEADLGAETAFEVVEEVQRRVKKEGVVD---VEG 60

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMS--DAGLKVML 144
           V E+I  +L    +   +       V+L  VGVNGVGKTT I K +  +        V+L
Sbjct: 61  VREVIKDVLRRYVRAGGFSLPDSGTVVLLFVGVNGVGKTTTIAKCAHFIRSTWGRDDVVL 120

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AAGDTFR+ AIDQL++W +R     V  + G+D AA+ ++A +  + +   V++ DTAGR
Sbjct: 121 AAGDTFRAGAIDQLRVWGERLGVRVVAQQPGADPAAVIFDAIQSVERRGGGVVLADTAGR 180

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
            HN + LM  + K+ RV++    HA +  L V+DA+TGQNA RQ E+F    G  GL++ 
Sbjct: 181 FHNRASLMDELAKVDRVIRTKAVHADYRRLLVIDASTGQNAFRQAEVFQETVGLDGLVLA 240

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K DG A+GG L+PI    +IP  F+G GEG+ DL PF  +++ + + 
Sbjct: 241 KYDGAAKGGVLVPISRRLEIPALFVGTGEGLEDLRPFDVEEYLSRLV 287


>gi|168184657|ref|ZP_02619321.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum Bf]
 gi|170760312|ref|YP_001787763.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A3 str. Loch Maree]
 gi|237795887|ref|YP_002863439.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum Ba4 str. 657]
 gi|169407301|gb|ACA55712.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A3 str. Loch Maree]
 gi|182672312|gb|EDT84273.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum Bf]
 gi|229261814|gb|ACQ52847.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum Ba4 str. 657]
          Length = 303

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 119/301 (39%), Positives = 185/301 (61%), Gaps = 4/301 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  KL +G   T     + I+ +++ +  +D+ + EELE++L+ +DIGV  + KI++ L 
Sbjct: 5   FFDKLKEGLTKTKDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKIIDRLR 64

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +     +   +  +I ++L         D +  P V+L++GVNGVGKTT IGK
Sbjct: 65  ERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITPDIT--PKVMLIIGVNGVGKTTSIGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +S K+ + G KV++AA DTFR+AAIDQL++W+ R   D +  + GSD  A+ ++A + A+
Sbjct: 123 VSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPGAVVFDAVQAAK 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++K DVLI DTAGRLHN   LM  + K+ ++L+R    A    L VLDATTGQNA+ Q +
Sbjct: 183 SRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDATTGQNAVIQAK 242

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F +     G+I+TK+DGTA+GG +I I     IPV  +GVGEGI DL+ F  ++F   +
Sbjct: 243 EFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQEFNPEEFVEAL 302

Query: 311 T 311
            
Sbjct: 303 F 303


>gi|171780112|ref|ZP_02921016.1| hypothetical protein STRINF_01900 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281460|gb|EDT46895.1| hypothetical protein STRINF_01900 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 430

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 177/314 (56%), Gaps = 3/314 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           +  + V +   +   K  +    T       +   +++ RR+D+   EELE++LI SD+G
Sbjct: 113 VKEESVNAPVETEEEKYNRSLKKTRTGFSARLNAFLANFRRVDEDFFEELEEMLILSDVG 172

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           V VA ++ E+L  +   ++      L    + +L+             +F     V+L V
Sbjct: 173 VNVATQLTEDLRYEAKLENAKKADDLRRVIIEKLVEIYEKDGVFNEQINFQDGLTVMLFV 232

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ K  + G KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 233 GVNGVGKTTSIGKLAYKYKNEGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKAD 292

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ VDVL+IDTAGRL N   LMA + K+ R++KR+ P APH  L  L
Sbjct: 293 PASVVFDGMERAVAENVDVLLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLAL 352

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D
Sbjct: 353 DASTGQNALSQAKEFSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDD 412

Query: 298 LEPFVAKDFSAVIT 311
           +  F ++DF   + 
Sbjct: 413 IGEFDSEDFIRGLL 426


>gi|78777041|ref|YP_393356.1| cell division transporter substrate-binding protein FtsY
           [Sulfurimonas denitrificans DSM 1251]
 gi|78497581|gb|ABB44121.1| signal recognition particle-docking protein FtsY [Sulfurimonas
           denitrificans DSM 1251]
          Length = 292

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 97/295 (32%), Positives = 165/295 (55%), Gaps = 15/295 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           + K    T     E +  ++  ++L    + E+E++L+ +D+  A+ + I+ EL   +  
Sbjct: 5   IKKSLHKT----AEALKLVVPKKKLSFS-KNEIEEILLEADVEYALVEIIINELYQSKIT 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +++   ++L  ++             +     + P V L+VGVNG GKTT I KL+ K  
Sbjct: 60  REILRPKLLATLA----------YTSYKEPEFNAPFVELIVGVNGAGKTTTISKLALKYK 109

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           + G K+ML AGDTFR+AAI+QL +WA + +   V S+ G D++A+AY+  + A++K  D 
Sbjct: 110 NDGKKIMLGAGDTFRAAAIEQLSLWAKKLNIPIVASKQGHDSSAVAYDTIESAKSKGYDH 169

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +IIDTAGRLH  + L   + K+ R+  +    APH    ++D T G +A+ Q + F+ + 
Sbjct: 170 VIIDTAGRLHTQTNLANELKKIHRICDKAHSGAPHRTTLIIDGTQGNSAIAQAKAFNEMI 229

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G  G+I+TK+DGTA+GG +  I     +P+ ++G GE   +L PF   +F   + 
Sbjct: 230 GVDGIIITKLDGTAKGGSIFSIAYALNLPILYVGTGEQPENLTPFDKYEFVDGLL 284


>gi|268564306|ref|XP_002647138.1| Hypothetical protein CBG16436 [Caenorhabditis briggsae]
          Length = 496

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 137/306 (44%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELL----- 71
            A    K++  I  +  +  +++     + +E+   LI SD+ + + +++ + +      
Sbjct: 3   LADLGRKIRNAIGKLGQNTVINEEELDLMLKEVCTALIESDVHIRLVKQLKDNVKNAINF 62

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +        + +   V   + K++ P   PF      R +V + VG+ G GKTT   K+
Sbjct: 63  EEIVGGANKRRYIQKTVFNELLKLVDPGVTPFTPTKGKR-NVFMFVGLQGSGKTTTCSKM 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++   
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFTK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR    + L   + ++   +       P +V+ V+DA+ GQ    Q   
Sbjct: 182 EGFEIIIVDTSGRHKQEASLFEEMLQVSNAVT------PDNVVFVMDASIGQACEAQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+D  A+GGG +  V   K PV F+G GE I+D E F  K F   + 
Sbjct: 236 FSQTVDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDIA 301


>gi|306833958|ref|ZP_07467082.1| cell division protein FtsY [Streptococcus bovis ATCC 700338]
 gi|304423959|gb|EFM27101.1| cell division protein FtsY [Streptococcus bovis ATCC 700338]
          Length = 485

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 118/300 (39%), Positives = 172/300 (57%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +   +++ RR+D+   EELE++LI SD+GV VA ++ E+L  +
Sbjct: 182 EKYNRSLKKTRTGFSARLNAFLANFRRVDEEFFEELEEMLILSDVGVNVATQLTEDLRYE 241

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+             +F     V+L VGVNGVGKTT IGKL
Sbjct: 242 AKLENAKRADDLKRVIIEKLVDIYEKDGVFNEKINFQDDLTVMLFVGVNGVGKTTSIGKL 301

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K  + G KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 302 AYKYKNEGKKVMLVAADTFRAGAVAQLVEWGRRVGVPVVTGPEKADPASVVFDGMEKAVA 361

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + VD+L+IDTAGRL N   LMA + K+ R++KR+ P APH  L  LDA+TGQNAL Q + 
Sbjct: 362 ENVDILLIDTAGRLQNKDNLMAELEKIGRIIKRVVPDAPHETLLALDASTGQNALSQAKE 421

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TGLI+TK+DGTA+GG ++ I     IPV F+G GE I+D+  F ++DF   + 
Sbjct: 422 FSKITPLTGLILTKIDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGKFDSEDFMRGLL 481


>gi|115440231|ref|NP_001044395.1| Os01g0772800 [Oryza sativa Japonica Group]
 gi|20160917|dbj|BAB89854.1| putative signal recognition particle 54kD protein [Oryza sativa
           Japonica Group]
 gi|21743252|dbj|BAC03250.1| putative signal recognition particle 54kD protein [Oryza sativa
           Japonica Group]
 gi|32879776|dbj|BAC79360.1| signal recognition particle 54kDa subunit [Oryza sativa Japonica
           Group]
 gi|113533926|dbj|BAF06309.1| Os01g0772800 [Oryza sativa Japonica Group]
 gi|215767979|dbj|BAH00208.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222619331|gb|EEE55463.1| hypothetical protein OsJ_03626 [Oryza sativa Japonica Group]
          Length = 496

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   +  + ++  +D+ V      E+   L++SD+   + + +   +      
Sbjct: 3   LAQLGGSISRALAQMSNATVIDEKVLSDCLNEISRALLQSDVQFKMVRDMQSNIKRIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++       + +      +  ML P  KP       +P V++ VG+ G GKTT   K 
Sbjct: 63  ETLAAGTNKRRIIQQAVFTELCNMLDP-GKPSFTPKKGKPCVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + 
Sbjct: 122 AYYHQRKGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE I++ E F  K F + + 
Sbjct: 236 FKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|319956140|ref|YP_004167403.1| signal recognition particle-docking protein ftsy [Nitratifractor
           salsuginis DSM 16511]
 gi|319418544|gb|ADV45654.1| signal recognition particle-docking protein FtsY [Nitratifractor
           salsuginis DSM 16511]
          Length = 291

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/295 (34%), Positives = 166/295 (56%), Gaps = 15/295 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L K F  T+  ++E + +     ++    +EE E++L+ +D+   + ++++E L      
Sbjct: 5   LKKAFGKTNEAIREVLPE--KKTKIS---KEEFEEILLEADVDYELIERLLESLPETITR 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
             +     L  V +   + + P         ++ P V +++GVNG GKTT I KL+++  
Sbjct: 60  --IQAYNSLISVFQYRAEWIDP--------NAYHPFVEMIIGVNGAGKTTTIAKLARRYQ 109

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             G  V+L AGDTFR+AAI+QL  WA++     V +  G D +A+ ++  + A AK VD 
Sbjct: 110 KEGKSVILGAGDTFRAAAIEQLSRWAEKLQVPIVATRQGHDPSAVVFDTIRSALAKGVDR 169

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +IIDTAGRLH  + L   + KM+RV  +  P APH  + +LD T G + + Q + F A+ 
Sbjct: 170 VIIDTAGRLHTQTNLAEELKKMVRVADKALPGAPHRKMLILDGTQGSSTVNQAKAFDAMI 229

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G  G+I+TK+DGTA+GG ++ I    K+P+YF+G GE   DL PF A ++   I 
Sbjct: 230 GIDGIIITKLDGTAKGGSVLSIADQLKMPIYFIGTGEQPEDLIPFKANEYVNTIL 284


>gi|83944830|ref|ZP_00957196.1| signal recognition particle protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851612|gb|EAP89467.1| signal recognition particle protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 515

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L     D    E+   L+ +D+ +   +    ++  K   
Sbjct: 2   FDSLSERLSGVFDSLTGRGALSEKDVDAALREIRVALLEADVALPAVKDFTAKVREKAIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGK 130
           ++V       Q+V+  V + + ++L    +P     +  P V IL+ G+ G GKTT   K
Sbjct: 62  EEVIRSVSPGQQVIKIVHDGLVELLGGEGEPEGLTLTGEPPVAILMAGLQGSGKTTTTAK 121

Query: 131 LSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K++S     KV++A+ DT R AA++QL   A++     +    G  A  +A  A    
Sbjct: 122 LAKRISEREKKKVLVASLDTRRPAAMEQLAQMAEKAGVACLPIVAGQSAVEIAKRAMSAG 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV+I+DTAGR   +  +M    K+  V        P   L V D+ TGQ+A+   
Sbjct: 182 RLQGYDVVILDTAGRTSIDEEMMGEAAKIAEV------ARPRETLLVADSLTGQDAVETA 235

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TGL++T+MDG  RGG  + +     +P+ FLGV E ++ L+ F AK  +  
Sbjct: 236 KRFDERLKLTGLVLTRMDGDGRGGAALSMRWVTGLPIKFLGVSEKVDGLDAFDAKRLAGR 295

Query: 310 ITGCLD 315
           I G  D
Sbjct: 296 ILGRGD 301


>gi|314986452|gb|EFT30544.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL005PA2]
 gi|314990812|gb|EFT34903.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL005PA3]
          Length = 396

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 112/293 (38%), Positives = 179/293 (61%), Gaps = 5/293 (1%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           +++  L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S  
Sbjct: 100 NSNNALARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDP 159

Query: 83  RVLYDV--SELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
               +V   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G
Sbjct: 160 AHAREVLHHELVELVGSDMDRSINLDRLEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEG 219

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +    + VDV+++
Sbjct: 220 KTVLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQTGIDEGVDVVLV 279

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   T
Sbjct: 280 DTAGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARVFSEVVDVT 337

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G++++K+DG+A+GG ++ +     +PV  +G+GEG +DL P  A +F   + G
Sbjct: 338 GIVLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPLDADNFVTGLMG 390


>gi|307105722|gb|EFN53970.1| hypothetical protein CHLNCDRAFT_31879 [Chlorella variabilis]
          Length = 490

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/306 (24%), Positives = 142/306 (46%), Gaps = 15/306 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKR-- 74
            A    ++ + +  + +   +D+ V +    E+   L+++D+ V +   +   +  +   
Sbjct: 3   LAELGQRISQALGSLNAVPVVDEAVLDACLKEIATALLQADVNVRLVANLRNNVKKRVNM 62

Query: 75  --YAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ Q+V+   V + +  ML             + ++++ VG+ G GKTT   K 
Sbjct: 63  EQLASGLNKQKVIEKAVFDELCSMLDGGDPKKTELKKGKTNIVMFVGLQGAGKTTTCTKY 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  +   DTFR+ A DQLK  A +    F  S   +D A +A +   + + 
Sbjct: 123 AFLWKKKGFKPAMVCADTFRAGAFDQLKQNATKAQIPFYGSYTETDPAIIAQQGVDRFKK 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR      L   + ++   +       P  V+ V+D + GQ A  Q + 
Sbjct: 183 EGRDLIIVDTSGRHKQEEALFEEMRQVAAAVN------PQHVIFVMDGSIGQAAFDQAKA 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH       +I+TK+DG A+GGG +  V   + P+ F+G GE +++ E F  + F   + 
Sbjct: 237 FHESVDVGQVIITKLDGHAKGGGALSAVAATRSPITFIGTGEHMHEFESFETQKFVGRLL 296

Query: 312 GCLDYG 317
           G  D+G
Sbjct: 297 GRGDWG 302


>gi|203288125|ref|YP_002223140.1| signal recognition particle protein [Borrelia recurrentis A1]
 gi|201085345|gb|ACH94919.1| signal recognition particle protein [Borrelia recurrentis A1]
          Length = 449

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 146/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGIT-----DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + S   K+ I       +I+ + ++  + + +++ LI +D+ + V ++ V  ++ +  
Sbjct: 2   FENLSAGFKDFIKYVSGKAVINEKNIETAI-DTIKNTLIEADVNLRVVRRFVNSVVEEAK 60

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              V          +  V++ +   L         +  ++   IL++G+ G GKTT   K
Sbjct: 61  GIKVLRGVDPKSHFIKIVNDKLVNFLGDKHSELILNPINKLSCILMLGLQGSGKTTTCAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++     KV+L A DTFR+AAI+QLK+   + +      E       +  ++ + A+
Sbjct: 121 LAMRLKSENRKVLLVAADTFRAAAIEQLKVLGAQINISVFALENEDSPIKVVKKSIEYAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D +IIDT GRL    +L+  I  +  ++       P   + V DA TGQ A+   +
Sbjct: 181 VELFDTVIIDTRGRLEVEDLLLREIIDIKNIV------VPTETILVADAMTGQVAVNIAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+I TK D  ARGG ++ +     +P+ F+GVGE   DL+ F     S+ I
Sbjct: 235 KFNESVGITGVIFTKFDSDARGGAILSLKTICGVPIKFVGVGEKPEDLDVFYPDRVSSRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|213691143|ref|YP_002321729.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|213522604|gb|ACJ51351.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|320457201|dbj|BAJ67822.1| signal recognition particle-docking protein [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 420

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 181/312 (58%), Gaps = 7/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
                + + +++L    + +     + + +I++  +L +   E++ED L+ +D+G   ++
Sbjct: 110 DTPESAGTRMQRLKARLSKSGNPFGKALFNILAKDQLSEADWEDVEDTLLLADVGAEASE 169

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWD--FSHRPHVILVVGVN 120
           ++VEEL         S    +      +L+  +   + +  N D   +++P V+++VGVN
Sbjct: 170 QLVEELRNDARIAGQSDPAEVRAALKDKLLKLVGTDIDRRLNADKDGANKPSVVIMVGVN 229

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT  GKLS+ +   G +VM+ A DTFR+AA DQL+ W  R +   V S+  G+D A
Sbjct: 230 GTGKTTTAGKLSRLLVSEGKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGADPA 289

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL VLDA
Sbjct: 290 SVAFEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLP--VDEVLLVLDA 347

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL 
Sbjct: 348 TTGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLA 407

Query: 300 PFVAKDFSAVIT 311
           PF  + F   I 
Sbjct: 408 PFDPEGFVDGIL 419


>gi|27904844|ref|NP_777970.1| signal recognition particle protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|31340420|sp|Q89AE4|SRP54_BUCBP RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|27904242|gb|AAO27075.1| signal recognition particle protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 450

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 136/306 (44%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +  + I  I +  RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FNNLTQRFLKIIKKISNKGRLTEKNIKETLREIRIALLEADVALPVVKNFIPSIQKSVIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V+      Q ++  V + +  +L   +   N   +  P +IL++G+ G GKTT   KL
Sbjct: 62  NQVNKSLTPGQELIKIVKKELTLILGKENHSLNLSVT-PPAIILMIGLQGSGKTTTTAKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            + +      KV++ + D +R AAI QLK+ + +    F  S        +   A + A+
Sbjct: 121 GQLIRTKYKKKVIVTSIDIYRLAAIKQLKMLSKQAKISFFPSNNTQSPKDIVQHAIQHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL+IDTAGRL  +  +M  +  +  +        P     V DA  GQ+++  + 
Sbjct: 181 LKFYDVLLIDTAGRLQIDKKMMNELLDVYNI------SHPIETFFVADAMFGQDSINVIN 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+     +  I+TK D   R G ++ I    K P+ F+G GE + +LE F     ++ I
Sbjct: 235 EFNKYLPVSSFIITKTDSDTRAGIILSIKYLTKKPIKFIGTGEKLEELELFYPDRIASRI 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGMGDM 300


>gi|85098637|ref|XP_960643.1| signal recognition particle 54 kDa protein [Neurospora crassa
           OR74A]
 gi|28922154|gb|EAA31407.1| signal recognition particle 54 kDa protein [Neurospora crassa
           OR74A]
 gi|28949956|emb|CAD70717.1| probable signal recognition particle subunit SRP54 [Neurospora
           crassa]
          Length = 511

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   ++D+  +  LD    DG+ +E+   L+ +D+ V +  ++ + + +    
Sbjct: 3   LQDLGRRINAAVSDLTRAPNLDEKAFDGMLKEICSALLEADVNVRLVGQLRKSIKSTVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K++        + +      + +++ P ++PF      + +VI+ VG+ G GKTT   KL
Sbjct: 63  KELPPAVNKKRLIQKAVFDELVRLVDPHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G +V L   DTFR+ A DQLK  A +    +  S   +D   +A +   + + 
Sbjct: 122 ARHYQSRGFRVGLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPVVVARDGVDKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K +++I+DT+GR      L   +  +   +K      P   + VLDA+ GQ A  Q + 
Sbjct: 182 EKFEIIIVDTSGRHRQEEALFQEMMDIQTAVK------PDETIMVLDASIGQQAEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK DG A GGG I  V     P+ F+G GE + DLE FV  +F + + 
Sbjct: 236 FKEAADFGAIIITKTDGHAAGGGAISAVAATHTPIVFIGTGEHMLDLERFVPNNFISKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|229586415|ref|YP_002844916.1| Signal recognition particle protein [Rickettsia africae ESF-5]
 gi|228021465|gb|ACP53173.1| Signal recognition particle protein [Rickettsia africae ESF-5]
          Length = 449

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 151/309 (48%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       KL    + I++  ++D  +R+ +   L+ SD+ + V +  + E+  
Sbjct: 1   MFKTLTQNLTKIFDKLVS--SGILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQ 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           K   ++V       Q ++  + E +  +L         + + +P V  L+VG+ G GKTT
Sbjct: 58  KALGQEVIKSVSPGQMIIKIIHEEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+ ++ +   KV+L + DT+R AA +QL I A+    + +    G     +   A 
Sbjct: 118 ASSKLALRLRNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAI 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    DV+I DTAGR   +  +M     + ++++      P   L V+D+ TGQ+A+
Sbjct: 178 AEAKISAYDVVIYDTAGRTQIDKAMMEEALAIKKIVE------PTETLLVIDSMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     +GLI++++DG ++GG  + +    K P+ FL  GE + DLE F A+  
Sbjct: 232 VTASSFNEKLAISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERL 291

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 292 ASRILDMGD 300


>gi|289192492|ref|YP_003458433.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938942|gb|ADC69697.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 451

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/307 (29%), Positives = 153/307 (49%), Gaps = 20/307 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L + +  +       ++L   V ++++  LI++D+ V +  K+ +E+  +   
Sbjct: 2   LDKLGENLNKALNKLKTAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALE 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +         + ++  V E + K+L   +K    +   + ++IL+VG+ G GKTT   KL
Sbjct: 62  EKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELN-PKKQNIILLVGIQGSGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQAQ 190
           ++ +   GLK  L A DT+R AA +QLK  A++        E  +     +  E  ++ +
Sbjct: 121 ARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K DVLIIDTAGR      L+  + ++  +        P  ++ V+D T GQ A  Q +
Sbjct: 181 --KADVLIIDTAGRHKEEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAK 232

Query: 251 MFHAVAG-TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            F    G    +I+TK+DG+A+GGG +  V   K P+ F+G+GEGI+DLEPF  K F + 
Sbjct: 233 AFKEAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISR 292

Query: 310 ITGCLDY 316
           + G  D 
Sbjct: 293 LLGMGDL 299


>gi|116200506|ref|XP_001226065.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88175512|gb|EAQ82980.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 512

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 142/306 (46%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   + D+  +  LD    D + + +   L+ +D+ V +  ++ + + +    
Sbjct: 3   LQDLGRRINAAVNDLTRAPNLDEKTFDSMLKTICSALLEADVNVRLVGQLRKSIRSTVNF 62

Query: 77  KDVSVQRVLYD-----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           KD+             V + +  ++ P ++PF      + +VI+ VG+ G GKTT   KL
Sbjct: 63  KDLPPAVNKKRLIQKAVYDELVSLVDPHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G +  L   DTFR+ A DQLK  A +    +  S   +D   +A E  ++ + 
Sbjct: 122 ARHYQSRGFRACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPTVVAREGVEKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ +++I+DT+GR    S L   +  +   +K      P   + VLDA+ GQ A  Q + 
Sbjct: 182 ERFEIIIVDTSGRHRQESALFQEMTDIQTAIK------PDETIMVLDASIGQQAEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK DG A GGG I  V     P+ F+G GE + D E FV + F + + 
Sbjct: 236 FKEAADFGAIIITKTDGHAAGGGAISAVAATHTPIVFIGTGEHMFDFERFVPRSFISKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|289616337|emb|CBI56864.1| unnamed protein product [Sordaria macrospora]
          Length = 512

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   ++D+  +  LD    DG+ +E+   L+ +D+ V +  ++ + + +    
Sbjct: 3   LQDLGRRINAAVSDLTRAPNLDEKAFDGMLKEICSALLEADVNVRLVGQLRKSIKSTVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K++        + +      + +++ P ++PF      + +VI+ VG+ G GKTT   KL
Sbjct: 63  KELPPAVNKKRLIQKAVFDELVRLVDPHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G +V L   DTFR+ A DQLK  A +    +  S   +D   +A +   + + 
Sbjct: 122 ARHYQSRGFRVGLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPVVVARDGVDKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K +++I+DT+GR      L   +  +   +K      P   + VLDA+ GQ A  Q + 
Sbjct: 182 EKFEIIIVDTSGRHRQEESLFQEMMDIQTAVK------PDETIMVLDASIGQQAEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK DG A GGG I  V     P+ F+G GE + DLE FV  +F + + 
Sbjct: 236 FKEAADFGAIIITKTDGHAAGGGAISAVAATHTPIVFIGTGEHMLDLERFVPNNFISKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|57168091|ref|ZP_00367230.1| signal recognition particle-docking protein FtsY [Campylobacter
           coli RM2228]
 gi|305431759|ref|ZP_07400926.1| cell division protein FtsY [Campylobacter coli JV20]
 gi|57020465|gb|EAL57134.1| signal recognition particle-docking protein FtsY [Campylobacter
           coli RM2228]
 gi|304444843|gb|EFM37489.1| cell division protein FtsY [Campylobacter coli JV20]
          Length = 288

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 165/309 (53%), Gaps = 27/309 (8%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-- 70
                 KG A T   +     +   ++++   + EE+   L+ +D+   + ++I+  L  
Sbjct: 1   MFDFFKKGLAKTLESIVGVKGE---NKKITKDLLEEI---LLEADVAYEIVEEIIYYLPP 54

Query: 71  ---LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
              + K   K V     LY+  E + +               +P V L++GVNG GKTT 
Sbjct: 55  SDEVKKEDLKRVMGSYFLYENKEFLDE---------------KPFVELILGVNGAGKTTS 99

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL+      G KV+L A DTFR+ AI+QL++W+++   D V ++ G D +A+A++   
Sbjct: 100 IAKLANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVDIVLTQQGHDPSAVAFDTIS 159

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+AK  D +IIDTAGRL N   L   + K++R+  +  PHAPH  + VLD T G   + 
Sbjct: 160 KARAKGFDKVIIDTAGRLQNQKNLANELEKIVRISAKAMPHAPHRKILVLDGTQGNAGIL 219

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+ +    G+I+TK+DGTA+GG L  I    ++P+ ++GVGE + DL  F A++F 
Sbjct: 220 QAKAFNELVQLDGVIITKLDGTAKGGALFSIARELELPILYIGVGEKMQDLIEFNAQNFL 279

Query: 308 AVIT-GCLD 315
             +  G  D
Sbjct: 280 DTLLEGVFD 288


>gi|39976193|ref|XP_369487.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145011749|gb|EDJ96405.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 510

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/302 (27%), Positives = 143/302 (47%), Gaps = 14/302 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
                 ++   ++D+  +  LD+  +  +   L+ +D+ V +  ++ + + +    K++ 
Sbjct: 3   LQDLGRRINAAVSDLTRAPNLDEKAK--ICAALLEADVNVRLVGQLRKSIKSTVNFKELP 60

Query: 81  VQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                  + +      +  ++ P ++PF      + +VI+ VG+ G GKTT   KL++  
Sbjct: 61  PAVNKKRLIQKAVFDELVSLVDPHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKLARHY 119

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ +
Sbjct: 120 QSRGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVAREGVDKFKKERFE 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+I+DT+GR    S L   +  + + +K      P   + VLDA+ GQ A  Q + F   
Sbjct: 180 VIIVDTSGRHRQESALFQEMMDIQKAVK------PDETIMVLDASIGQQAEAQAKAFKEA 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           A    +I+TK DG A GGG I  V     P+ F+G GE + DLE F  + F + + G  D
Sbjct: 234 ADFGAIIITKTDGHASGGGAISAVAATHTPIVFIGTGEHMLDLERFAPQQFISKLLGMGD 293

Query: 316 YG 317
             
Sbjct: 294 MA 295


>gi|153941237|ref|YP_001391749.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum F str. Langeland]
 gi|152937133|gb|ABS42631.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum F str. Langeland]
 gi|295319774|gb|ADG00152.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum F str. 230613]
          Length = 303

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 119/301 (39%), Positives = 185/301 (61%), Gaps = 4/301 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  KL +G   T     + I+ +++ +  +D+ + EELE++L+ +DIGV  + KI++ L 
Sbjct: 5   FFDKLKEGLTKTKDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKIIDRLR 64

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +     +   +  +I ++L         D +  P V+L++GVNGVGKTT IGK
Sbjct: 65  ERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITPDTT--PKVMLIIGVNGVGKTTSIGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +S K+ + G KV++AA DTFR+AAIDQL++W+ R   D +  + GSD  A+ ++A + A+
Sbjct: 123 VSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPGAVVFDAVQAAK 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++K DVLI DTAGRLHN   LM  + K+ ++L+R    A    L VLDATTGQNA+ Q +
Sbjct: 183 SRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDATTGQNAVIQAK 242

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F +     G+I+TK+DGTA+GG +I I     IPV  +GVGEGI DL+ F  ++F   +
Sbjct: 243 EFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQEFNPEEFVEAL 302

Query: 311 T 311
            
Sbjct: 303 F 303


>gi|219117644|ref|XP_002179613.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408666|gb|EEC48599.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 448

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 25/288 (8%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLS 100
             E+   L+ +D+ V VA  ++E +  +   ++V     + Q+ +  + + +  M+   S
Sbjct: 10  LREVRRALLDADVNVDVADTLIEGVRARSLGQEVLEGVTAEQQFVKAMYDELLDMMGGDS 69

Query: 101 K-------------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
                               +  P VIL+ G+ G GKTT  GKL+  + +   KV+L A 
Sbjct: 70  SVPMSDGPSNVPVATLASGTAADPAVILLAGLQGAGKTTAAGKLALFLKEQ-RKVLLVAA 128

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D +R AAI QL++  +    +        D   +     ++A+ +  D +I+DTAGR   
Sbjct: 129 DIYRPAAIKQLQVLGESIGVEVFTKGTDVDPVEIVNAGIQKARDEGYDTVIVDTAGRQVI 188

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           ++ LM  + +M R        +P   L ++DA TGQ A      F +  G TG I+TKMD
Sbjct: 189 DTDLMDELQRMKRA------ASPQETLLIVDAMTGQEAASLTAAFDSAIGLTGAILTKMD 242

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G +RGG  + +      P+ F+G GE   DLEPF     ++ I G  D
Sbjct: 243 GDSRGGAAVSVRGVSGKPIKFVGTGEKTADLEPFYPDRMASRILGMGD 290


>gi|34580832|ref|ZP_00142312.1| signal recognition particle protein [Rickettsia sibirica 246]
 gi|28262217|gb|EAA25721.1| signal recognition particle protein [Rickettsia sibirica 246]
          Length = 449

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 151/309 (48%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       KL    + I++  ++D  +R+ +   L+ SD+ + V +  + E+  
Sbjct: 1   MFKTLTQNLTKIFDKLVS--SGILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQ 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           K   ++V       Q ++  + E +  +L         + + +P V  L+VG+ G GKTT
Sbjct: 58  KALGQEVIKSVSPGQMIIKIIHEEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+ ++ +   KV+L + DT+R AA +QL I A+    + +    G     +   A 
Sbjct: 118 ASSKLALRLRNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAI 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    DV+I DTAGR   +  +M     + ++++      P   L V+D+ TGQ+A+
Sbjct: 178 AEAKISAYDVVIYDTAGRTQIDKAMMEEALAIKKIVE------PTETLLVIDSMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     +GLI++++DG ++GG  + +    K P+ FL  GE + DLE F A+  
Sbjct: 232 VTASSFNEKLAISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERL 291

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 292 ASRILDMGD 300


>gi|328955640|ref|YP_004372973.1| signal recognition particle-docking protein FtsY [Coriobacterium
           glomerans PW2]
 gi|328455964|gb|AEB07158.1| signal recognition particle-docking protein FtsY [Coriobacterium
           glomerans PW2]
          Length = 306

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 165/311 (53%), Gaps = 12/311 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +     L++G   +   L E          + +   E+LED L+  D+G  +A K+ +EL
Sbjct: 1   MGLFDALSRGLERSRETLNEVF---YFGGEVSEEFWEDLEDTLVMDDMGAEIAMKLTDEL 57

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIG 129
                 K++   R L      +   L     P + D  S  P  +L VG+NG GKTT +G
Sbjct: 58  REIAARKNLKTSRQLRCA---LAARLEDYFVPSSCDPISQTPSCVLFVGINGAGKTTTVG 114

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++ K   AG + ++ + DTFR+AAI+QL IW +R     V    G+D A++ Y+   +A
Sbjct: 115 KIASKAVAAGKRTVIGSADTFRAAAIEQLDIWGERAGVPVVKRTRGADPASVCYDVLDEA 174

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP-----HSVLQVLDATTGQN 244
                D+++IDTAGRLH ++ LM  + K++ V ++             V+ V+DATTGQN
Sbjct: 175 DRIAADLVLIDTAGRLHTSADLMRELAKVVNVTRKRAERMRAGPMAVHVVLVIDATTGQN 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q   F+   G  G+IMTK+DGTA+GG  + +    ++P+  +GVGE ++DL+ F A 
Sbjct: 235 GLAQASRFNDSLGLDGVIMTKLDGTAKGGIALAVASKLELPILAVGVGEQVDDLQTFDAG 294

Query: 305 DFSAVITGCLD 315
           DFS  + G  +
Sbjct: 295 DFSRALVGTGE 305


>gi|226356240|ref|YP_002785980.1| signal recognition particle protein [Deinococcus deserti VCD115]
 gi|226318230|gb|ACO46226.1| putative Signal recognition particle protein (Fifty-four protein)
           [Deinococcus deserti VCD115]
          Length = 446

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 136/304 (44%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL++ +  +    +L +        E+   L+ +D+   VA+  V  +  K   
Sbjct: 2   FEALGNKLQDILDRVGRESKLTEAQVKAAMREIRMALLEADVNFGVAKDFVARVSEKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V     + Q V+  V + + + L    K    +     +V  +VG+ G GKTT  GKL
Sbjct: 62  QEVLGSLNAGQTVVKLVHDELIETLGG--KAAQPELKSEGNVWFMVGLQGAGKTTSTGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G +V+L A DT R AA DQL++ A +     +    G           +  + 
Sbjct: 120 AAHYKSKGRRVLLVAADTQRPAARDQLEVLAKQVGVPVLKVNDGETPQETRRRLDEHLKT 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++I+DTAGRL  +  LM  +  +   L+      P   L V+DA TGQ AL   + 
Sbjct: 180 DFRDLVIVDTAGRLQIDEALMDQLANLQSELQ------PTETLLVVDAMTGQEALNVAQT 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      +GL++TKMDG ARGG  +        P+YF G  E +  LEPF     +  I 
Sbjct: 234 FDQRVNLSGLVVTKMDGDARGGASLSARSVTGKPIYFAGTSEKLTGLEPFYPDRVAGRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|15892137|ref|NP_359851.1| signal recognition particle protein [Rickettsia conorii str. Malish
           7]
 gi|28380155|sp|Q92J55|SRP54_RICCN RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|15619266|gb|AAL02752.1| signal recognition particle protein [Rickettsia conorii str. Malish
           7]
          Length = 449

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 151/309 (48%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       KL    + I++  ++D  +R+ +   L+ SD+ + V +  + E+  
Sbjct: 1   MFKTLTQNLTKIFDKLVS--SGILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQ 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           K   ++V       Q ++  + E +  +L         + + +P V  L+VG+ G GKTT
Sbjct: 58  KALGQEVIKSVSPGQMIIKIIHEEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+ ++ +   KV+L + DT+R AA +QL I A+    + +    G     +   A 
Sbjct: 118 ASSKLALRLRNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAI 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    DV+I DTAGR   +  +M     + ++++      P   L V+D+ TGQ+A+
Sbjct: 178 AEAKISAYDVVIYDTAGRTQIDKAMMEEALAIKKIVE------PTETLLVIDSMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     +GLI++++DG ++GG  + +    K P+ FL  GE + DLE F A+  
Sbjct: 232 VTASSFNEKLAISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERL 291

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 292 ASRILDMGD 300


>gi|257465874|ref|ZP_05630185.1| Signal recognition particle receptor FtsY [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 334

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 121/308 (39%), Positives = 178/308 (57%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVA 63
           K           L +    T   L   +  + SSR + D+ + EELE+LLI+SDIG+ + 
Sbjct: 26  KEEERPKGIFASLHEKLFKTREGLFSKMKSLFSSRSIIDEEMYEELEELLIQSDIGLEMT 85

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +KIV +L      ++V     +Y V + + +  +  S+       +   VIL+VGVNGVG
Sbjct: 86  EKIVTDLEKAVKKQEVQNPEEVYPVLKTVMEEYLIESEEEFPKEENELQVILIVGVNGVG 145

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGK++ K+   G KV+L AGDTFR+AA++QL+ WA R+ A+ V  + G+D  ++ +
Sbjct: 146 KTTTIGKIAAKLKKEGKKVVLGAGDTFRAAAVEQLEEWAKRSEAEIVKGKEGADPGSVVF 205

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +   +A+    DV IIDTAGRLHN + LM  + K+  V+++      +  L V+D TTGQ
Sbjct: 206 DTLTKAEELGADVAIIDTAGRLHNKAYLMKELEKINNVVRKKIGERHYESLLVIDGTTGQ 265

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F+ V   TG I+TK+DGTA+GG +  +    K P+ F+GVGE I DL  F  
Sbjct: 266 NALNQAREFNEVTHLTGFIITKLDGTAKGGIVFSLSELLKKPIRFIGVGEKIEDLRKFSK 325

Query: 304 KDFSAVIT 311
           KDF A + 
Sbjct: 326 KDFIAALF 333


>gi|159902550|ref|YP_001549894.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9211]
 gi|159887726|gb|ABX07940.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9211]
          Length = 444

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 101/311 (32%), Positives = 175/311 (56%), Gaps = 5/311 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           ++ E + W+++L +G   T       + +      L   V ++LE LL+R+D+GV    +
Sbjct: 131 ISLEDIDWLKRLRQGLEKTRKGFVTDLLEKFGDDPLTPEVLDDLEALLLRADVGVNATDQ 190

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH----VILVVGVNG 121
           I+  L  +   + +  +     + + + +++    K  N +     H    + L+VGVNG
Sbjct: 191 IITALRRRLNEEVLDSKEGFRFLKQQLCQIVNKPIKNSNQEVLAPKHKSLNIWLLVGVNG 250

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAA 180
           VGKTT +GKL+     +G   ++AA DTFR+AA+ Q++IW  R+    + +E  + D AA
Sbjct: 251 VGKTTTLGKLAHLALRSGYTALIAAADTFRAAAVQQVQIWGRRSGVSVIANETPNADPAA 310

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A   A++K++++L++DTAGRL   + LM  + K+ R++ RL P A    L VLDA+
Sbjct: 311 IVFDAIGAAKSKEIELLLVDTAGRLQTKNNLMEELAKIRRIIDRLAPEAIVESLLVLDAS 370

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQN L Q   F   A  TG+++TK+DG++RGG    +    K+P+ F+G GE + DL+P
Sbjct: 371 QGQNGLNQAMSFAESANLTGVVITKLDGSSRGGVAFAVASEAKLPIRFIGAGERLQDLKP 430

Query: 301 FVAKDFSAVIT 311
           F + +F   + 
Sbjct: 431 FNSFEFVEALL 441


>gi|224438196|ref|ZP_03659131.1| signal recognition particle-docking GTPase FtsY [Helicobacter
           cinaedi CCUG 18818]
 gi|313144641|ref|ZP_07806834.1| signal recognition particle-docking GTPase FtsY [Helicobacter
           cinaedi CCUG 18818]
 gi|313129672|gb|EFR47289.1| signal recognition particle-docking GTPase FtsY [Helicobacter
           cinaedi CCUG 18818]
          Length = 290

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 103/293 (35%), Positives = 163/293 (55%), Gaps = 11/293 (3%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             + T  K  + I  ++ S++ D   ++ELE++LI  DI   + + I++ L         
Sbjct: 4   SLSKTLQKTTQNIASLLGSKK-DKLSKDELEEILIECDIAYELVESILDSL--------- 53

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
                   + + +  +L   S P   +    +P V L+VGVNG GKTT I KL+      
Sbjct: 54  PPYVSKDALHKALIALLEIESSPLLENADSIKPLVTLIVGVNGAGKTTSIAKLANLAQKE 113

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G KVMLAAGDTFR+AAI+Q+K+W +R S   + ++   D +A+A+++   A A+ +D L 
Sbjct: 114 GKKVMLAAGDTFRAAAIEQIKLWGERLSIPVIATQHMHDPSAVAFDSINSALARNIDELY 173

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDTAGRLHN + L   + K++RV ++     P     VLD T G +A+ Q + F      
Sbjct: 174 IDTAGRLHNQTNLNNELLKIVRVCQKALRDLPLRKFLVLDGTQGSSAINQAKAFSQNITF 233

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            G+I+TK+DGT++GG +  IV   KIP+ F+GVGE  +DL  F  +++  ++ 
Sbjct: 234 DGIIITKLDGTSKGGAIFSIVSELKIPICFIGVGEKADDLLKFDKQEYVKILL 286


>gi|223993863|ref|XP_002286615.1| SRP54, signal recognition particle 54 kDa protein 2-like protein
           [Thalassiosira pseudonana CCMP1335]
 gi|220977930|gb|EED96256.1| SRP54, signal recognition particle 54 kDa protein 2-like protein
           [Thalassiosira pseudonana CCMP1335]
          Length = 451

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 89/317 (28%), Positives = 141/317 (44%), Gaps = 22/317 (6%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + +L      +  KL+    D I++  L+ G+  E+   LI SD+ V +   +   +  K
Sbjct: 3   LAELGGKLRDSLRKLQSPSGDAITAETLN-GILSEISRALIESDVNVKLVMTLRSNIQKK 61

Query: 74  R------------YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVG 118
                               + V   V + +  ML P  +     +     +P++IL VG
Sbjct: 62  VGALVSSDNANSAANNANIARLVQRAVVDELTSMLTPNGENATKAYVMKRGKPNIILFVG 121

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT I K +      G K  +   DTFR+ A DQLK  A +    F  S   +D 
Sbjct: 122 LQGAGKTTSIAKYAHYYQRKGWKTAMVCADTFRAGAFDQLKQNATKLRIPFYGSYTEADP 181

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A E  ++  +   +++I+DT+GR      L   + ++   +       P + + V+D
Sbjct: 182 VLIAEEGVERFISDGYEIIIVDTSGRHRQEETLFEEMQEISAAV------RPDNTIFVMD 235

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQ    Q   FH       +I+TK+DG A+GGG +  V     P+ FLG GE   DL
Sbjct: 236 ATQGQAVYDQALAFHGAVNVGSVIVTKLDGHAKGGGALSAVSATGSPIVFLGSGERFEDL 295

Query: 299 EPFVAKDFSAVITGCLD 315
           +PF AK F + + G  D
Sbjct: 296 DPFNAKSFVSKLLGFGD 312


>gi|160934419|ref|ZP_02081806.1| hypothetical protein CLOLEP_03292 [Clostridium leptum DSM 753]
 gi|156867092|gb|EDO60464.1| hypothetical protein CLOLEP_03292 [Clostridium leptum DSM 753]
          Length = 305

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 126/302 (41%), Positives = 186/302 (61%), Gaps = 3/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    K+ +G   T   +   I  ++ S  ++DD + EELE+LL+  D+G+  AQ+I EE
Sbjct: 1   MGLFSKIKEGLKKTRDSVVGQIDSMLKSFTKIDDDLFEELEELLVMGDVGINTAQRICEE 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +     V     +  +   + + ++      +   + +P +ILV+GVNGVGKTT IG
Sbjct: 61  LKARVKRDGVKDPNQIMGMLRNVVREMLEGDTSLHL--ATKPSIILVIGVNGVGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+S +++  G KV++AA DTFR+AAIDQL +WADR+ AD V    GSD AA+ ++A   A
Sbjct: 119 KISARLTREGKKVVIAAADTFRAAAIDQLAVWADRSGADLVKQGEGSDPAAVVFDAISAA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +++  DV+I DTAGRLHN   LM  + K+ R++ R  P A   +L VLDA TGQNA+ Q 
Sbjct: 179 KSRNADVIICDTAGRLHNKKNLMDELSKIGRIIDRELPEAEKEILLVLDAATGQNAVNQA 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F    G TG+++TK+DGTARGG +I I     +PV F+GVGE I+DL+PF  +DF+  
Sbjct: 239 REFKNSCGITGIVLTKLDGTARGGVVIAIKEDLNVPVKFIGVGEQIDDLQPFDPEDFANA 298

Query: 310 IT 311
           + 
Sbjct: 299 LF 300


>gi|261402637|ref|YP_003246861.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369630|gb|ACX72379.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 450

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 154/308 (50%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L + +  +       R+L   V ++++  LI++D+ V +  K+ +E+  +   
Sbjct: 2   LDKLGENLNKALNKLKAAAFVDRKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALE 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +         + ++  V E + K+L   +K    +   + +VIL++G+ G GKTT   KL
Sbjct: 62  EKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELN-PKKQNVILLIGIQGSGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQ 190
           ++ +   GLK  L A DT+R AA +QLK  A++        E  + D   +  E  ++ +
Sbjct: 121 ARYVQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPLYGDETRTKDPVEIVKEGMQKFK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K DVLIIDTAGR      L+  + ++  +        P  ++ V+D T GQ A  Q +
Sbjct: 181 --KADVLIIDTAGRHKEEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQARIQAK 232

Query: 251 MFHAVAG-TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            F    G    +I+TK+DG+A+GGG +  V   + P+ F+GVGEGI+DLEPF  K F + 
Sbjct: 233 AFKDAVGEIGSIIVTKLDGSAKGGGALSAVAETQAPIKFIGVGEGIDDLEPFDPKKFISR 292

Query: 310 ITGCLDYG 317
           + G  D  
Sbjct: 293 LLGMGDLD 300


>gi|315049435|ref|XP_003174092.1| signal recognition particle protein [Arthroderma gypseum CBS
           118893]
 gi|311342059|gb|EFR01262.1| signal recognition particle protein [Arthroderma gypseum CBS
           118893]
          Length = 543

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 143/306 (46%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   ++D+  S  +D    D + +E+   L+ +D+ V + Q++ + +      
Sbjct: 3   LQDLGRRINAAVSDLTRSNTVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQL 62

Query: 77  KDVSVQRVLYDVSEL-----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ++ P ++PF      +P+VI++VG+ G GKTT   KL
Sbjct: 63  PSIPPAVNKKRLIQKAVFDQLVALVDPHAEPFKPK-KGKPNVIMMVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D   ++ E   + + 
Sbjct: 122 ARHYQTKGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ D++I+DT+GR      L   + ++   +K      P   + VLD+T GQ A  Q   
Sbjct: 182 ERFDIIIVDTSGRHRQEEDLFEEMTQIQAAIK------PDQTIMVLDSTIGQAAETQSAA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F + A    +I+TK DG A GGG I  V   + P+ FLG GE + DLE F  + F   + 
Sbjct: 236 FKSAADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPQPFVQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|149194109|ref|ZP_01871207.1| Signal recognition particle protein [Caminibacter mediatlanticus
           TB-2]
 gi|149136062|gb|EDM24540.1| Signal recognition particle protein [Caminibacter mediatlanticus
           TB-2]
          Length = 449

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 149/304 (49%), Gaps = 12/304 (3%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              +++ GF S   K++    +    + LD     EL+  L+++D+     ++++ ++  
Sbjct: 1   MFDRISDGFRSAINKIRMKDDEKSLKKALD-----ELKKNLLKADVHFKTVKELLRKVEI 55

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     +     L  + E + ++L           S  P V+++ G+ G GKTT   KL+
Sbjct: 56  ETKKAGIGRANFLKALEEALKEILTAPGNYGFVYASKPPTVVMMTGLQGSGKTTTTAKLA 115

Query: 133 KKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
             +      KV++ A D  R AA++QL+  A++   D    E   +A  +A +  ++A+ 
Sbjct: 116 YYLKNFKKKKVLMVAADLQRLAAVEQLRQLAEQNELDIFYDENAKNAVEVAKKGVEEAKN 175

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DV++IDTAGRL  +  LM     +I + K +DP+    +  V D+ TG++A+   + 
Sbjct: 176 KFYDVVLIDTAGRLAIDEALMNE---LIEMKKEVDPN---EIFYVADSLTGKDAINTAKA 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I+TK DG ++GG  + I      P+ F+G GE I DLE FV     + I 
Sbjct: 230 FDEKLDITGVILTKYDGDSKGGVALSIAHQVGKPLRFIGTGEKIADLEVFVPDRIVSRIM 289

Query: 312 GCLD 315
           G  D
Sbjct: 290 GAGD 293


>gi|283782585|ref|YP_003373339.1| signal recognition particle-docking protein FtsY [Gardnerella
           vaginalis 409-05]
 gi|283441393|gb|ADB13859.1| signal recognition particle-docking protein FtsY [Gardnerella
           vaginalis 409-05]
          Length = 393

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 119/321 (37%), Positives = 187/321 (58%), Gaps = 12/321 (3%)

Query: 1   MSNQKVASESL-----SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR 55
           + N++V SE L     S I++L    A ++      + +IIS   L +   E++ED L+ 
Sbjct: 74  VPNEEVKSELLPESTSSRIKRLRGRLAHSANPFGRALFNIISKDHLSEEDWEDVEDTLLM 133

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFS--HRP 111
           +D+G   ++++VE+L         S    ++    ++L+  +     +  N D S  H P
Sbjct: 134 ADVGSRASEELVEDLRKDARIAGTSNSEDVHSALRTKLLKIVDEDADRRLNVDKSDAHHP 193

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV- 170
            VI++VGVNG GKTT  GKL++        VM AA DTFR+AA DQL+ WA   S   V 
Sbjct: 194 SVIMMVGVNGTGKTTTAGKLARLFIAKKRSVMFAAADTFRAAAADQLETWASAVSVPVVR 253

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++ G+D A++A+ A  +A+ ++ D+LI+DTAGRL N + LM  +GK+ RV+++  P   
Sbjct: 254 ANKDGADPASVAFIAANKAKEEQTDLLIVDTAGRLQNKANLMEELGKIRRVIEKTMP--V 311

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             VL VLDATTGQN + Q ++F    G TG+++TK+DG+A+GG +I +     +PV  +G
Sbjct: 312 DEVLLVLDATTGQNGMSQAKVFAEAIGITGVVLTKLDGSAKGGIVIAVQRELGVPVKLVG 371

Query: 291 VGEGINDLEPFVAKDFSAVIT 311
           +GEG +DL PF A+ F   + 
Sbjct: 372 LGEGPDDLVPFDAQSFVDGLL 392


>gi|257452334|ref|ZP_05617633.1| Signal recognition particle receptor FtsY [Fusobacterium sp.
           3_1_5R]
          Length = 334

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 121/308 (39%), Positives = 177/308 (57%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVA 63
           K           L +    T   L   +  + SS ++ D+ + EELE+LLI+SDIG+ + 
Sbjct: 26  KEEERPKGIFASLHEKLFKTREGLFSKMKSLFSSHKIIDEEMYEELEELLIQSDIGLEMT 85

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           QKIV +L      + V     +Y V + + +  +  S+        +  VIL+VGVNGVG
Sbjct: 86  QKIVTDLEKAVKKQGVQNPEEVYPVLKTVMEEYLIESEEEFPREEEQLQVILIVGVNGVG 145

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGK++ K+   G KV+L AGDTFR+AA++QL+ WA R+ A+ V  + G+D  ++ +
Sbjct: 146 KTTTIGKIAAKLKKEGKKVVLGAGDTFRAAAVEQLEEWAKRSEAEIVKGKEGADPGSVVF 205

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +   +A+    DV IIDTAGRLHN + LM  + K+  V+++      +  L V+D TTGQ
Sbjct: 206 DTLTKAEELGADVAIIDTAGRLHNKAYLMKELEKINNVVRKKIGERHYESLLVIDGTTGQ 265

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F+ V   TG I+TK+DGTA+GG +  +    K P+ F+GVGE I DL  F  
Sbjct: 266 NALNQAREFNEVTHLTGFIITKLDGTAKGGIVFSLSELLKKPIRFIGVGEKIEDLRKFSK 325

Query: 304 KDFSAVIT 311
           KDF A + 
Sbjct: 326 KDFIAALF 333


>gi|304315442|ref|YP_003850589.1| signal recognition particle protein Srp54 [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588901|gb|ADL59276.1| signal recognition particle protein Srp54 [Methanothermobacter
           marburgensis str. Marburg]
          Length = 442

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L + +  +     +D+ V +E    ++  LI+SD+ + +   + + +  +   
Sbjct: 2   LGNLGRSLSKTMKKLAGMTIVDEEVVKEVIKDIQRALIQSDVNIKLVFNLSKSIEERALN 61

Query: 77  KD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++        + ++  V E + K+L   S     +   +P+ IL +G+ G GKTT IGKL
Sbjct: 62  EEPPKGITPKEHIISIVYEEMVKLLGERSHELKIE--EKPYRILFLGLQGSGKTTTIGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +   G  V +   DT+R AA +QLK + +             DA  LA +  ++ Q 
Sbjct: 120 ARYLRKKGFTVGVVCTDTWRPAAFEQLKQYTEGQDISVYGDPENKDALDLAEKGLERFQK 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DV+I DTAGR      L+  + ++  V+K      PH  + V+D T GQ A  Q   
Sbjct: 180 K--DVIIFDTAGRHKEEKDLLREMEELSAVIK------PHEAILVIDGTIGQQAREQALA 231

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG+A+GGG +  V     P+ F+G GE I+DLE F  + F + + 
Sbjct: 232 FREATDIGSIIVTKLDGSAKGGGALSAVAEIGAPIRFIGTGERIDDLEVFDPERFISRLL 291

Query: 312 GCLDY 316
           G  D 
Sbjct: 292 GMGDL 296


>gi|183981799|ref|YP_001850090.1| cell division protein FtsY [Mycobacterium marinum M]
 gi|183175125|gb|ACC40235.1| cell division protein FtsY [Mycobacterium marinum M]
          Length = 458

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 171/308 (55%), Gaps = 5/308 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
                 + +L    A +   L   +  +I    LD+   +++ED L+ +D+G  V + +V
Sbjct: 153 EPPEGRLERLRGRLAKSQNALGRSVLGLIGGGDLDEDSWQDVEDTLLVADLGPVVTEAVV 212

Query: 68  EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGK 124
            +L ++  + +V  +     V  +++ K L P          H   P V+LVVGVNG GK
Sbjct: 213 SQLRSRLASGNVRSEDDARAVLRDVLIKALQPDMDRSIRALPHPDHPSVLLVVGVNGTGK 272

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT +GKL++ +   G +V+L A DTFR+AA  QL+ WA R  A+ V    G+D A++A++
Sbjct: 273 TTTVGKLARVLVADGRRVVLGAADTFRAAAAVQLQTWAARVGAEVVSGAEGADPASVAFD 332

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A  +  A   DV++IDTAGRLH    LM  +GK+ RV+ R    A   VL VLDAT GQN
Sbjct: 333 AVDKGVAAGADVVLIDTAGRLHTKVGLMDELGKVKRVVTRR--AAVDEVLLVLDATIGQN 390

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q ++F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF   
Sbjct: 391 GLAQAKVFAEVVDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPA 450

Query: 305 DFSAVITG 312
            F   + G
Sbjct: 451 AFVDALLG 458


>gi|218189132|gb|EEC71559.1| hypothetical protein OsI_03915 [Oryza sativa Indica Group]
          Length = 496

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   +  + ++  +D+ V      E+   L++SD+   + + +   +      
Sbjct: 3   LAQLGGSISRALAQMSNATVIDEKVLSDCLNEISRALLQSDVQFKMVRDMQSNIKRIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++       + +      +  ML P  KP       +P V++ VG+ G GKTT   K 
Sbjct: 63  ETLAAGTNKRRIIQQAVFTELCNMLDP-GKPSFTPKKGKPCVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + 
Sbjct: 122 AYYHQRKGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE I++ E F  K F + + 
Sbjct: 236 FKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGERIDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|182414651|ref|YP_001819717.1| signal recognition particle protein [Opitutus terrae PB90-1]
 gi|177841865|gb|ACB76117.1| signal recognition particle protein [Opitutus terrae PB90-1]
          Length = 447

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 149/304 (49%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL + + ++     L +       +E+   L+ +D+   VA++ VE +  +   
Sbjct: 2   FESLTEKLGQALRNLRGVGTLSEENMAEALKEVRSALLSADVHFKVAREFVERVQQQAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  + + + ++L   +   +     RP  +L+VG++G GKTT   KL
Sbjct: 62  QQVTKGIAPGQQVIKIIHDELVRLLGEGTTALS---GERPLKVLMVGLHGSGKTTSTAKL 118

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            K +   G +  + A D +R AAIDQL+I A +    F    +  D  A+   A  +AQA
Sbjct: 119 GKLLKKRGYRPFVVACDVYRPAAIDQLEILAKQEELGFYADRVSKDVPAIGSAALAEAQA 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I DTAGRL  +  L+  + ++   ++      P  VL V D   GQ A+   + 
Sbjct: 179 ATADCIIFDTAGRLQIDQDLIEEVKRLRARVQ------PDEVLLVADGALGQEAVNVAKA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     TGL++TKMDG ARGG  + I     +P+ F+G GE   D EPF     ++ I 
Sbjct: 233 FHDALQLTGLVLTKMDGDARGGAALSIKTITGVPIKFVGTGEKTADFEPFHPDRLASRIL 292

Query: 312 GCLD 315
           G  D
Sbjct: 293 GMGD 296


>gi|189183745|ref|YP_001937530.1| signal recognition particle protein [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180516|dbj|BAG40296.1| signal recognition particle protein [Orientia tsutsugamushi str.
           Ikeda]
          Length = 450

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + KL      I  S  L +     +  E+   L+ +D+ + V +  +  ++ K   
Sbjct: 2   FQTLTQKLSNIFDKIKGSTALSEQQVLTIAREVRIALLEADVSLVVIKDFINNVVEKAKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGK 130
           ++V       Q V+  +S+ + K+L              P V I+++G+ G GKTT   K
Sbjct: 62  QEVLRSVTPGQMVIKIISDEMIKVLSSSETEQALRIEFEPPVNIMMIGLQGSGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-ADFVCSEIGSDAAALAYEAFKQA 189
           L+ K++    KVM+ + D +R AA +QL+           +      +   +   + K+A
Sbjct: 122 LAMKLAKKNKKVMVVSLDIYRPAAREQLETLVRNHETILSLPIVSNENVFQIIARSTKEA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DV+I DTAGRLH +  ++  +  +  ++       P  +L V+D+  GQ ++   
Sbjct: 182 KLLGCDVVIYDTAGRLHIDEPMLQELSNIKEIIT------PKEILLVVDSLIGQESVNVA 235

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     +G+++TK+DG +RGG  + I      P+ FLG GE  NDLE F  +  ++ 
Sbjct: 236 NQFNQTLNISGVVLTKIDGDSRGGAALSIKYVTGKPIKFLGTGEKTNDLEEFHPERIASR 295

Query: 310 ITGCLD 315
           I G  D
Sbjct: 296 ILGKGD 301


>gi|126465672|ref|YP_001040781.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Staphylothermus marinus F1]
 gi|171769996|sp|A3DML3|SRP54_STAMF RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|126014495|gb|ABN69873.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Staphylothermus marinus F1]
          Length = 441

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 135/290 (46%), Gaps = 15/290 (5%)

Query: 35  IISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLY 86
           +      +  V+E + DL   LI++D+ V +  ++ +++  +   ++        +  + 
Sbjct: 14  LSGKGDYERAVKEFIRDLQKELIKADVNVKLVLELTKKIRERALKEEPPPGITRREWFVN 73

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            V E + K      KP          V+L+VG+ G GKTT   KL+      G +V L A
Sbjct: 74  IVYEELSKFFGGDKKPDIKPKKKP-WVMLLVGLQGSGKTTTAAKLAYYYKLEGYRVGLVA 132

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DT+R AA DQLK   ++            DA  +A    +   ++  D++I+DTAGR H
Sbjct: 133 ADTYRPAAYDQLKQLGEQIGVPVYGEPDNKDAVEIARRGVEYFVSRGFDIVIVDTAGRHH 192

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
               L+  + ++   +K      P  V+ V+DA  GQ A    + FH       +I+TK+
Sbjct: 193 REEDLLREMREIAENIK------PDEVVLVIDAAIGQQAHDLAKKFHEATPIGSIIVTKL 246

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           DGTA+GGG +  V      + F+G GE I++LE F    F A I G  D 
Sbjct: 247 DGTAKGGGALSAVAVTGATIKFIGTGEKIDELEVFRPPRFVARILGIGDL 296


>gi|296453395|ref|YP_003660538.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296182826|gb|ADG99707.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 420

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 180/312 (57%), Gaps = 7/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
                + + +++L    + +     + + +I++  +L +   E++ED L+ +D+G   ++
Sbjct: 110 DTPESAGTRMQRLKARLSKSGNPFGKALFNILAKDQLSEADWEDVEDTLLLADVGAEASE 169

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWD--FSHRPHVILVVGVN 120
           ++VEEL         S    +      +L+  +   + +  N D   +++P V+++VGVN
Sbjct: 170 QLVEELRNDARIAGQSDPAEVRAALKDKLLKLVGTDIDRRLNADKDGANKPSVVIMVGVN 229

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT  GKLS+ +   G +VML A DTFR+AA DQL+ W  +     V S+  G+D A
Sbjct: 230 GTGKTTTAGKLSRLLVSEGKQVMLGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPA 289

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL VLDA
Sbjct: 290 SVAFEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLP--VDEVLLVLDA 347

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL 
Sbjct: 348 TTGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLA 407

Query: 300 PFVAKDFSAVIT 311
           PF  + F   I 
Sbjct: 408 PFDPEGFVDGIL 419


>gi|121611665|ref|YP_999472.1| signal recognition particle-docking protein FtsY [Verminephrobacter
           eiseniae EF01-2]
 gi|121556305|gb|ABM60454.1| signal recognition particle-docking protein FtsY [Verminephrobacter
           eiseniae EF01-2]
          Length = 373

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 174/302 (57%), Gaps = 5/302 (1%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
              W+ +L  G   T       I+ + +  ++DD + EELE  L+ +D GV     ++ E
Sbjct: 76  RTGWLLRLKSGLRKT----GSSISTVFTGTQIDDALYEELETALLLADTGVKATGHLLAE 131

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +   +  +    +  +       L+   +      +HRP VI+V GVNG GKTT IG
Sbjct: 132 LKRRAKERRATDPAAVKALLAEALAELLRPLEKTLVIGAHRPTVIMVAGVNGAGKTTSIG 191

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K ++DAG  V+LAA DTFR+AA +QL +WADR   + V  E G D AA+ ++A    
Sbjct: 192 KLTKHLADAGATVLLAAADTFRAAAREQLGVWADRNMVEIVGQE-GGDPAAVGFDAVSAG 250

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL VLD  TGQNAL QV
Sbjct: 251 KARGKDVVLVDTAGRLPTQLHLMQELAKIRRVIGKADAGAPHEVLLVLDGNTGQNALAQV 310

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F      TGLI+TK+DGTA+GG L  I     IPVYF+GVGE + DLE F A++FS  
Sbjct: 311 RAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKLEDLETFNAREFSQA 370

Query: 310 IT 311
           + 
Sbjct: 371 LL 372


>gi|227543205|ref|ZP_03973254.1| signal recognition particle GTPase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181014|gb|EEI61986.1| signal recognition particle GTPase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 692

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 110/296 (37%), Positives = 173/296 (58%), Gaps = 11/296 (3%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           A ++  + +G+  I+S+  LD+   EE+ED LI +D+G +   K+V+ L  K  A+ V  
Sbjct: 401 AKSNNVIGQGVLGILSAGDLDEDAWEEIEDTLIMADLGASTTMKVVDSLREKIAARGVHN 460

Query: 82  QRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +    +   ++ + L+   +P          + ++P V+LVVGVNG GKTT +GKL + +
Sbjct: 461 EE---EARAMLRETLIEAGRPELDRSIKAMPYDNKPAVVLVVGVNGTGKTTTVGKLGRVL 517

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G  VM  A DTFR+AA DQL+ W  R  A  V  + G+D A++A++A  +   + VD
Sbjct: 518 VSMGHSVMFGAADTFRAAAADQLEAWGRRVGASTVRGKEGADPASVAFDAVAKGTEQGVD 577

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+++DTAGRLH ++ LM  +GK+ RV+++        VL VLDAT GQN + Q   F  V
Sbjct: 578 VVLVDTAGRLHTSTGLMDQLGKVKRVVEKKAK--VDEVLLVLDATVGQNGIIQARTFRDV 635

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + 
Sbjct: 636 VDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESFVDALL 691


>gi|325283006|ref|YP_004255547.1| signal recognition particle protein [Deinococcus proteolyticus MRP]
 gi|324314815|gb|ADY25930.1| signal recognition particle protein [Deinococcus proteolyticus MRP]
          Length = 459

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 139/307 (45%), Gaps = 20/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   KL++ +  +    +L +        E+   L+ +D+   VA+  V  +  +   
Sbjct: 2   FESLGNKLQDILAKVGGQDKLSEEQVKSTMREIRMALLEADVNFKVAKDFVATVSEQMVG 61

Query: 77  KDV--------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           + V        + Q ++  V + +  ML               +V  +VG+ G GKTT  
Sbjct: 62  QKVGGVSGELDAGQTIIKLVHDELVNMLGGDKAEPTLHKGR--NVWFMVGLQGAGKTTST 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++     G +++L A DT R AA DQL++ A +     +  E G   A        Q
Sbjct: 120 GKLAQLYKKQGKRILLVAADTQRPAARDQLEVLARQVGVPVLKVEDGESPATTKARMEAQ 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
              K  D++I+DTAGRL  ++ LM  +  + + L+      P   + V+DA TGQ AL  
Sbjct: 180 LAEKPADLVIVDTAGRLQVDAALMNELAALKQELQ------PTETMLVVDAMTGQEALNV 233

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F      TGLIMTK+DG ARGG  +        P+YF GV E +  LEPF     + 
Sbjct: 234 AQNFDERVAVTGLIMTKLDGDARGGAALSARSVTGRPIYFAGVSEKLTGLEPFYPDRIAG 293

Query: 309 VITGCLD 315
            I G  D
Sbjct: 294 RILGMGD 300


>gi|62185241|ref|YP_220026.1| signal recognition particle protein [Chlamydophila abortus S26/3]
 gi|62148308|emb|CAH64075.1| signal recognition particle protein [Chlamydophila abortus S26/3]
          Length = 447

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 151/305 (49%), Gaps = 21/305 (6%)

Query: 22  ASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYAK 77
           +S S KL    + +++SRR+ ++ + E + +    L+ +D+   V +  + ++  K   +
Sbjct: 3   SSLSQKLSSIFSSLVASRRITEENISEAIREVRLALLDADVNYHVVKSFIAKVKEKVLGE 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q+ +  + E + ++L       + + S  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVWKHVSPGQQFIRYLHEELTELLGD---KTDLNTSGNPGVILLCGLQGTGKTTTCAKLA 119

Query: 133 KKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
             +       KV++   D  R AA++QL+    +T A+   SE G D   +  +A   A+
Sbjct: 120 AYVLEERKAKKVLVVPCDLKRFAAVEQLRNLISKTKAELYNSE-GQDPVKVVSQALDYAK 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            ++ D+++IDTAGRLH + +LM  +  + +V            L V++   GQ+A+   +
Sbjct: 179 QERHDLVLIDTAGRLHVDEVLMEELASIQKVSHAS------ERLFVMNLAMGQDAVSTAK 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I++  DG AR G ++ +      P+ F G GE I DL PF A+  +  I
Sbjct: 233 AFDNYLDLTGVIISMTDGDARAGAVLSMKSLLGKPIKFEGCGEKIQDLRPFNAESMADRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|212223740|ref|YP_002306976.1| signal recognition particle GTPase [Thermococcus onnurineus NA1]
 gi|212008697|gb|ACJ16079.1| signal recognition particle GTPase [Thermococcus onnurineus NA1]
          Length = 301

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 98/309 (31%), Positives = 157/309 (50%), Gaps = 19/309 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             RKL +   S   K+ +     I  + +++ + +   +L + +D+ +   + + E++  
Sbjct: 1   MFRKLKEKLGSFVEKVSQT---EIREKDVENALWDLELEL-LEADVALETVEALREKIKE 56

Query: 73  KRYAKDVSVQRVLY-----DVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVG 123
           K   + V +           V E + ++L P  +            +P VI  VG NG G
Sbjct: 57  KLVGQKVKIGTNKKGLVEKAVREAVLEVLTPEKRIDLLEMIRSKEEKPFVIAFVGFNGSG 116

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT I KL+  +   GL V++AA DTFR+ AI+Q++  A R     +    G+D AA+AY
Sbjct: 117 KTTTIAKLAHWLKKNGLSVVIAASDTFRAGAIEQVEEHAKRVGVKVIKHSYGADPAAVAY 176

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+ +DV++IDTAGR   N  LM  + K++RV K      P  V+ V D+  G 
Sbjct: 177 DAIGHAKARGIDVVLIDTAGRNELNRNLMDEMKKIVRVTK------PDLVIFVGDSLAGN 230

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
             + Q + F+      G+I+TK+D  ARGG  + I      P+ F+GVG+G +DL+PF  
Sbjct: 231 AVVEQAKQFNEAVRIDGVILTKLDADARGGAALSISHAIGAPILFVGVGQGYDDLKPFDE 290

Query: 304 KDFSAVITG 312
           K F   I G
Sbjct: 291 KWFVERIFG 299


>gi|172048109|sp|A5UMY7|SRP54_METS3 RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
          Length = 445

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 144/304 (47%), Gaps = 19/304 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L + +  ++    +D    + V +E++  LI+SD+ +A+   + +++  +   
Sbjct: 2   LGNLGENLTKTMKKLVGISVIDKKTIEEVVKEIQRALIQSDVNIALVLDLSKKIKKRALE 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++        + V+  + E +  +L   +   + D   +P+ IL +G+ G GKTT IGKL
Sbjct: 62  EEPPKGITPREHVITIIYEEMVNLLGGEAPGLDIDV--KPYKILFLGLQGSGKTTTIGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            + +   G    +   DT+R AA +QL+   +             DA  LA +  K+ + 
Sbjct: 120 CRYLQKKGFNPAVVCTDTWRPAAYEQLRQLTEEMQVPLYGDPDNKDALDLAQKGLKEFKN 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K  V+I DTAGR      L+A +  +  +++      P   + V+D T GQ A  Q + 
Sbjct: 180 RK--VIIFDTAGRHKQEEDLIAEMDTLDDIIQ------PTESILVIDGTIGQQAGEQAKA 231

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG+A+GGG +  V     P+ F+G GE I+D E F    F + + 
Sbjct: 232 FSQATDVGSIIITKLDGSAKGGGAMSAVAETGAPIKFIGTGERIDDFELFDPARFISRLL 291

Query: 312 GCLD 315
           G  D
Sbjct: 292 GMGD 295


>gi|227830212|ref|YP_002831992.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Sulfolobus islandicus L.S.2.15]
 gi|259511385|sp|C3MPN4|SRP54_SULIL RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|227456660|gb|ACP35347.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Sulfolobus islandicus L.S.2.15]
          Length = 447

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 142/302 (47%), Gaps = 14/302 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
             +    +++ +T      +  D   +EL+  LI SD+ V +   +  ++  +   +   
Sbjct: 2   LENIRDAVRKFLTGSTPYEKAVDEFIKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPP 61

Query: 81  -----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 +  +  V + + K+     +P N + +  P +I++VGV G GKTT  GKL+   
Sbjct: 62  SVLERKEWFISIVYDELSKLFGGDKEP-NVNPTRLPFIIMLVGVQGSGKTTTAGKLAYFY 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV L A D +R AA DQL    ++            +A  +A +        K+D
Sbjct: 121 KRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMD 180

Query: 196 VLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           ++I+DTAGR      + L+  + ++   LK      P  V+ V+DA+ GQ A      FH
Sbjct: 181 IIIVDTAGRHGYGEETKLLEEMKEIYEALK------PDDVILVIDASIGQKAYDLASRFH 234

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             +    +I+TKMDGTA+GGG +  V      + F+G GE I++LE F AK + + I G 
Sbjct: 235 QASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGM 294

Query: 314 LD 315
            D
Sbjct: 295 GD 296


>gi|148643420|ref|YP_001273933.1| signal recognition particle protein Srp54 [Methanobrevibacter
           smithii ATCC 35061]
 gi|222445662|ref|ZP_03608177.1| hypothetical protein METSMIALI_01303 [Methanobrevibacter smithii
           DSM 2375]
 gi|288869608|ref|ZP_05975207.2| signal recognition particle protein [Methanobrevibacter smithii DSM
           2374]
 gi|148552437|gb|ABQ87565.1| signal recognition particle GTPase SRP54 [Methanobrevibacter
           smithii ATCC 35061]
 gi|222435227|gb|EEE42392.1| hypothetical protein METSMIALI_01303 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860574|gb|EFC92872.1| signal recognition particle protein [Methanobrevibacter smithii DSM
           2374]
          Length = 447

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 144/304 (47%), Gaps = 19/304 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L + +  ++    +D    + V +E++  LI+SD+ +A+   + +++  +   
Sbjct: 4   LGNLGENLTKTMKKLVGISVIDKKTIEEVVKEIQRALIQSDVNIALVLDLSKKIKKRALE 63

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++        + V+  + E +  +L   +   + D   +P+ IL +G+ G GKTT IGKL
Sbjct: 64  EEPPKGITPREHVITIIYEEMVNLLGGEAPGLDIDV--KPYKILFLGLQGSGKTTTIGKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            + +   G    +   DT+R AA +QL+   +             DA  LA +  K+ + 
Sbjct: 122 CRYLQKKGFNPAVVCTDTWRPAAYEQLRQLTEEMQVPLYGDPDNKDALDLAQKGLKEFKN 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K  V+I DTAGR      L+A +  +  +++      P   + V+D T GQ A  Q + 
Sbjct: 182 RK--VIIFDTAGRHKQEEDLIAEMDTLDDIIQ------PTESILVIDGTIGQQAGEQAKA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG+A+GGG +  V     P+ F+G GE I+D E F    F + + 
Sbjct: 234 FSQATDVGSIIITKLDGSAKGGGAMSAVAETGAPIKFIGTGERIDDFELFDPARFISRLL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|328947325|ref|YP_004364662.1| signal recognition particle protein [Treponema succinifaciens DSM
           2489]
 gi|328447649|gb|AEB13365.1| signal recognition particle protein [Treponema succinifaciens DSM
           2489]
          Length = 464

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 144/308 (46%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            + K+T  F+     L       I+ + +++ V E+++  L+ +D+ + V ++ V   + 
Sbjct: 1   MLEKITGTFSGIIRTLSG--KSSITEKNIEETV-EQIKMALLEADVNLRVVRRFVNSTIE 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +   + V       Q+ +  + + +  ML                VIL++G+ G GKTT 
Sbjct: 58  EAKGEKVLRAVDPGQQFVKIIYDKLVAMLGDKKTDLALKGPDTQSVILLLGLQGAGKTTA 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+ ++   G + +L A D  R AA++QL +  ++        E   DA  +A  +  
Sbjct: 118 AHKLAARLKKDGRRPLLVACDLIRPAAVEQLCVLGEKIGVPVYK-EDSKDAVKVAEHSVD 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+   +D +I+DTAGRL  +  +MA +  + + L       P   + V D+ TGQNA+ 
Sbjct: 177 FAKKNGLDTIIVDTAGRLQIDEEMMAELVSIKKKLN------PVETVLVADSMTGQNAVD 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F    G TG+I+TK D  ARGG  + +    + P+ F+G GE   D E F     +
Sbjct: 231 IAKSFDEQLGLTGVILTKFDSDARGGAALSLKSITQKPILFIGTGEKTEDFESFHPDRIA 290

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 291 SRILGMGD 298


>gi|238651027|ref|YP_002916884.1| signal recognition particle protein [Rickettsia peacockii str.
           Rustic]
 gi|238625125|gb|ACR47831.1| signal recognition particle protein [Rickettsia peacockii str.
           Rustic]
          Length = 449

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 152/309 (49%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       KL    + I++  ++D  +R+ +   L+ SD+ + V +  + E+  
Sbjct: 1   MFKTLTQNLTKIFDKLVS--SGILTEAQIDAAMRD-IRVALLESDVALPVIKDFIAEVKQ 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           K   ++V       Q ++  + E +  +L         + + +P V  L+VG+ G GKTT
Sbjct: 58  KALGQEVIKSVSPGQMIIKIIHEEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+ ++S+   KV+L + DT+R AA +QL I A+    + +    G     +   A 
Sbjct: 118 ASSKLALRLSNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAI 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +A+    DV+I DTAGR   +  +M     + ++++      P   L V+D+ TGQ+A+
Sbjct: 178 AEAKISAYDVVIYDTAGRTQIDKAMMEEALAIKKIVE------PTETLLVIDSMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                F+     +GLI++++DG ++GG  + +    K P+ FL  GE + DLE F A+  
Sbjct: 232 VTASSFNEKLAISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERL 291

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 292 ASRILDMGD 300


>gi|227488601|ref|ZP_03918917.1| signal recognition particle GTPase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091495|gb|EEI26807.1| signal recognition particle GTPase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 692

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 110/296 (37%), Positives = 173/296 (58%), Gaps = 11/296 (3%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           A ++  + +G+  I+S+  LD+   EE+ED LI +D+G +   K+V+ L  K  A+ V  
Sbjct: 401 AKSNNVIGQGVLGILSAGDLDEDAWEEIEDTLIMADLGASTTMKVVDSLREKIAARGVHN 460

Query: 82  QRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +    +   ++ + L+   +P          + ++P V+LVVGVNG GKTT +GKL + +
Sbjct: 461 EE---EARAMLRETLIEAGRPELDRSIKAMPYDNKPAVVLVVGVNGTGKTTTVGKLGRVL 517

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G  VM  A DTFR+AA DQL+ W  R  A  V  + G+D A++A++A  +   + VD
Sbjct: 518 VSMGHSVMFGAADTFRAAAADQLEAWGRRVGASTVRGKEGADPASVAFDAVAKGTEQGVD 577

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+++DTAGRLH ++ LM  +GK+ RV+++        VL VLDAT GQN + Q   F  V
Sbjct: 578 VVLVDTAGRLHTSTGLMDQLGKVKRVVEKKAK--VDEVLLVLDATVGQNGIIQARTFRDV 635

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + 
Sbjct: 636 VDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESFVDALL 691


>gi|295111654|emb|CBL28404.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Synergistetes bacterium SGP1]
          Length = 447

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL+   + + S  +L     D    E+   L+ +D+   VA+ +V  +  +   
Sbjct: 2   FDALREKLEAAFSRLRSRGKLSEADVDAALREIRKSLLEADVDFKVARSLVARIRERALQ 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV     + Q +   V E +  ++   + P     S  P VIL+VG+ G GKTT   KL
Sbjct: 62  LDVIESISAAQHIATVVYEELVSLMGDPA-PLAI-ASMPPTVILMVGLQGSGKTTTTVKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAAALAYEAFKQAQ 190
           ++++  +    ++ A D  R AA+DQL++ A+     F   + G +D   +   A ++A 
Sbjct: 120 ARRLQGS-HNPLVVACDLRRPAAVDQLRVLAEEARVAFYGPDAGGTDVLEVVRGARQRAA 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV+++DTAGRLH +  LM  +  +   L       PH  L VLDA  GQ A+    
Sbjct: 179 DRMNDVILLDTAGRLHLDQELMEELSAIASALP------PHEKLLVLDAMMGQEAVNVAR 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TGLI+TK+DG ARGG  + +     +PV F GVGE  + LE F ++  +  I
Sbjct: 233 AFHERLALTGLILTKLDGDARGGSALAVRAVTDVPVKFAGVGERTDALEVFDSRRMAGRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 MGMGD 297


>gi|170757082|ref|YP_001781994.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum B1 str. Okra]
 gi|169122294|gb|ACA46130.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum B1 str. Okra]
          Length = 303

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 119/301 (39%), Positives = 185/301 (61%), Gaps = 4/301 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  KL +G   T     + I+ +++ +  +D+ + EELE++L+ +DIGV  + KI++ L 
Sbjct: 5   FFDKLKEGLTKTKDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKIIDRLR 64

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +     +   +  +I ++L         D +  P V+L++GVNGVGKTT IGK
Sbjct: 65  ERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITPDTT--PKVMLIIGVNGVGKTTSIGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +S K+ + G KV++AA DTFR+AAIDQL++W+ R   D +  + GSD  A+ ++A + A+
Sbjct: 123 VSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPGAVVFDAVQAAK 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++K DVLI DTAGRLHN   LM  + K+ ++L+R    A    L VLDATTGQNA+ Q +
Sbjct: 183 SRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDATTGQNAVIQAK 242

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F +     G+I+TK+DGTA+GG +I I     IPV  +GVGEGI DL+ F  ++F   +
Sbjct: 243 EFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQDFNPEEFVEAL 302

Query: 311 T 311
            
Sbjct: 303 F 303


>gi|21672654|ref|NP_660721.1| signal recognition particle protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091302|sp|Q8K9F7|SRP54_BUCAP RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|21623290|gb|AAM67932.1| signal recognition particle protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 450

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 152/303 (50%), Gaps = 17/303 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  II+  RL +        E+   L+ +D+ ++V +K ++ +  K   
Sbjct: 2   FNNLTERLSQSLRKIINKGRLTEENIKDTIREVRKALLEADVTLSVIKKFIQNVSKKAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +++      Q  +  V   +   +   +   N      P +ILVVG+ GVGKTT + KL
Sbjct: 62  HEINKSLTPGQEFIKIVKNELILSMGEKNHDLNLSI-QPPAIILVVGLQGVGKTTTLVKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +   K +   + D +R+AAI QL+I +D+   DF  S+       +  EA + A+
Sbjct: 121 AKWIKEKYKKKILTVSTDIYRAAAIKQLQILSDQVKIDFYLSDTTQTPINITKEAIEHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  D+L+IDTAGRLH N+ +M  I  +  + K      P   L ++D+  GQ+A+   +
Sbjct: 181 LKLYDLLLIDTAGRLHINTEMMNEINTIQNISK------PIETLLIVDSMMGQDAINIAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A    +G+++TK D  AR G  + I      P+ F+G GE ++ LEPF  +  +  I
Sbjct: 235 KFSASLSISGIVITKTDSDARSGVALSIRHITGKPIKFIGTGEKLHQLEPFHPERIADRI 294

Query: 311 TGC 313
            G 
Sbjct: 295 LGM 297


>gi|315917031|ref|ZP_07913271.1| cell division protein ftsY [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313690906|gb|EFS27741.1| cell division protein ftsY [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 337

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 121/308 (39%), Positives = 178/308 (57%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVA 63
           K           L +    T   L   +  + SSR + D+ + EELE+LLI+SDIG+ + 
Sbjct: 29  KEEERPKGIFASLHEKLFKTREGLFSKMKSLFSSRSIIDEEMYEELEELLIQSDIGLEMT 88

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +KIV +L      ++V     +Y V + + +  +  S+       +   VIL+VGVNGVG
Sbjct: 89  EKIVTDLEKAVKKQEVQNPEEVYPVLKTVMEEYLIESEEEFPKEENELQVILIVGVNGVG 148

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGK++ K+   G KV+L AGDTFR+AA++QL+ WA R+ A+ V  + G+D  ++ +
Sbjct: 149 KTTTIGKIAAKLKKEGKKVVLGAGDTFRAAAVEQLEEWAKRSEAEIVKGKEGADPGSVVF 208

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +   +A+    DV IIDTAGRLHN + LM  + K+  V+++      +  L V+D TTGQ
Sbjct: 209 DTLTKAEELGADVAIIDTAGRLHNKAYLMKELEKINNVVRKKIGERHYESLLVIDGTTGQ 268

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F+ V   TG I+TK+DGTA+GG +  +    K P+ F+GVGE I DL  F  
Sbjct: 269 NALNQAREFNEVTHLTGFIITKLDGTAKGGIVFSLSELLKKPIRFIGVGEKIEDLRKFSK 328

Query: 304 KDFSAVIT 311
           KDF A + 
Sbjct: 329 KDFIAALF 336


>gi|229579027|ref|YP_002837425.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Sulfolobus islandicus Y.G.57.14]
 gi|284997634|ref|YP_003419401.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Sulfolobus islandicus L.D.8.5]
 gi|259511388|sp|C3NDW4|SRP54_SULIY RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|228009741|gb|ACP45503.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Sulfolobus islandicus Y.G.57.14]
 gi|284445529|gb|ADB87031.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Sulfolobus islandicus L.D.8.5]
          Length = 447

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 142/302 (47%), Gaps = 14/302 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
             +    +++ +T      +  D   +EL+  LI SD+ V +   +  ++  +   +   
Sbjct: 2   LENIRDAVRKFLTGSTPYEKAVDEFIKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPP 61

Query: 81  -----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 +  +  V + + K+     +P N + +  P +I++VGV G GKTT  GKL+   
Sbjct: 62  SVLERKEWFISIVYDELSKLFGGDKEP-NVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFY 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV L A D +R AA DQL    ++            +A  +A +        K+D
Sbjct: 121 KRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMD 180

Query: 196 VLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           ++I+DTAGR      + L+  + ++   LK      P  V+ V+DA+ GQ A      FH
Sbjct: 181 IIIVDTAGRHGYGEETKLLEEMKEIYEALK------PDDVILVIDASIGQKAYDLASRFH 234

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             +    +I+TKMDGTA+GGG +  V      + F+G GE I++LE F AK + + I G 
Sbjct: 235 QASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGM 294

Query: 314 LD 315
            D
Sbjct: 295 GD 296


>gi|154509175|ref|ZP_02044817.1| hypothetical protein ACTODO_01696 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798809|gb|EDN81229.1| hypothetical protein ACTODO_01696 [Actinomyces odontolyticus ATCC
           17982]
          Length = 413

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 116/319 (36%), Positives = 185/319 (57%), Gaps = 11/319 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S+ +        + +L +  AS S  L   I  ++S  +L     EE+E+ L+ +D+G+ 
Sbjct: 94  SSIERPEPVRGRMERLRERLAS-SGSLGRAILGVLSRGQLGAADWEEIEESLLIADLGLE 152

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNW-----DFSHRPHVI 114
               ++E L  +   + V+ +  + ++       L+   + +  N      D S +P V+
Sbjct: 153 ATDTLMEALKRRVAVESVTDEARIREILREELLELVDPAMDRSLNLERPEVDGSVKPAVV 212

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE- 173
           L+VGVNG GKTT +GKL++ +      V+L A DTFR+AA DQL  W +R   D V S+ 
Sbjct: 213 LMVGVNGTGKTTTVGKLARILVAEDKSVILGAADTFRAAAADQLATWGERVGVDVVRSDR 272

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G+D A++A+EA ++   + VDV+++DTAGRL N S LM  +GK+ RV+ +  P +   V
Sbjct: 273 EGADPASVAFEAVREGVERDVDVVLVDTAGRLQNKSTLMDELGKIKRVMTKQAPVS--EV 330

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLDATTGQN ++Q E+F    G TG+++TK+DG+A+GG ++ +     +PV F+G+GE
Sbjct: 331 LLVLDATTGQNGMKQAEVFAEATGVTGIVLTKLDGSAKGGIVVSVQRALGVPVKFVGLGE 390

Query: 294 GINDLEPFVAKDFSAVITG 312
           G +DL PF  + F   I G
Sbjct: 391 GADDLAPFDPQGFVDAIVG 409


>gi|317058877|ref|ZP_07923362.1| cell division protein ftsY [Fusobacterium sp. 3_1_5R]
 gi|313684553|gb|EFS21388.1| cell division protein ftsY [Fusobacterium sp. 3_1_5R]
          Length = 337

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 121/308 (39%), Positives = 177/308 (57%), Gaps = 1/308 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVA 63
           K           L +    T   L   +  + SS ++ D+ + EELE+LLI+SDIG+ + 
Sbjct: 29  KEEERPKGIFASLHEKLFKTREGLFSKMKSLFSSHKIIDEEMYEELEELLIQSDIGLEMT 88

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           QKIV +L      + V     +Y V + + +  +  S+        +  VIL+VGVNGVG
Sbjct: 89  QKIVTDLEKAVKKQGVQNPEEVYPVLKTVMEEYLIESEEEFPREEEQLQVILIVGVNGVG 148

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGK++ K+   G KV+L AGDTFR+AA++QL+ WA R+ A+ V  + G+D  ++ +
Sbjct: 149 KTTTIGKIAAKLKKEGKKVVLGAGDTFRAAAVEQLEEWAKRSEAEIVKGKEGADPGSVVF 208

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +   +A+    DV IIDTAGRLHN + LM  + K+  V+++      +  L V+D TTGQ
Sbjct: 209 DTLTKAEELGADVAIIDTAGRLHNKAYLMKELEKINNVVRKKIGERHYESLLVIDGTTGQ 268

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q   F+ V   TG I+TK+DGTA+GG +  +    K P+ F+GVGE I DL  F  
Sbjct: 269 NALNQAREFNEVTHLTGFIITKLDGTAKGGIVFSLSELLKKPIRFIGVGEKIEDLRKFSK 328

Query: 304 KDFSAVIT 311
           KDF A + 
Sbjct: 329 KDFIAALF 336


>gi|210633181|ref|ZP_03297717.1| hypothetical protein COLSTE_01630 [Collinsella stercoris DSM 13279]
 gi|210159221|gb|EEA90192.1| hypothetical protein COLSTE_01630 [Collinsella stercoris DSM 13279]
          Length = 306

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 168/310 (54%), Gaps = 12/310 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +     L +G   +   L E          +D+   EELED L+  D+G  +A ++ ++L
Sbjct: 1   MGLFDSLKRGLERSREALNEVFY---FGGEVDESFWEELEDTLVMGDMGGEIAMRVTDDL 57

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                 K++     L   + L  ++     +P +  F   P  +L VG+NG GKTT +GK
Sbjct: 58  RETAARKNLKTADQLR--AALAERLREFFVEPESDIFDDTPSCVLFVGINGAGKTTTVGK 115

Query: 131 LSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           ++   +   AG +V++ + DTFR+AAI+QL +W  R     +  + GSD A++ Y+   +
Sbjct: 116 IASAEAEAHAGKRVVIGSADTFRAAAIEQLDVWGQRADVPVIKRDRGSDPASVCYDVLDE 175

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA-----PHSVLQVLDATTGQ 243
           A  +  D+++IDTAGRLH++  LM  + K+++V ++          P  V+ V+D+ TGQ
Sbjct: 176 ADKRGSDLVLIDTAGRLHSSPELMRELAKVVKVTRKRAESCAAGPMPVHVVLVIDSATGQ 235

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N L Q E F+   G  G+IMTK+DGTA+GG  + +    K+P+Y +GVGE + DL+ F A
Sbjct: 236 NGLVQAEEFNDALGLDGIIMTKLDGTAKGGIALAVAEKLKLPIYRIGVGEQVEDLQRFDA 295

Query: 304 KDFSAVITGC 313
            DF   + G 
Sbjct: 296 ADFCRALVGL 305


>gi|17539958|ref|NP_501507.1| hypothetical protein F21D5.7 [Caenorhabditis elegans]
 gi|3876111|emb|CAA91040.1| C. elegans protein F21D5.7, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|3876124|emb|CAA92301.1| C. elegans protein F21D5.7, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 496

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 138/306 (45%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELL----- 71
            A    K++  I  +  S  +++G    + +E+   LI SD+ + + +++ + +      
Sbjct: 3   LADLGRKIRNAIGKLGQSTVINEGELDLMLKEVCTALIESDVHIRLVKQLKDNVKKAINF 62

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +        + +   V   + K++ P   PF      R +V + VG+ G GKTT   K+
Sbjct: 63  EEIVGGANKRRYIQKTVFNELLKLVDPGVTPFTPTKGRR-NVFMFVGLQGSGKTTTCTKM 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++   
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFTQ 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR    + L   + ++   +       P +V+ V+DA+ GQ    Q   
Sbjct: 182 EGFEIIIVDTSGRHKQEASLFEEMLQVSNAVT------PDNVVFVMDASIGQACEAQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+D  A+GGG +  V   K PV F+G GE I+D E F  K F   + 
Sbjct: 236 FSQTVDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDIA 301


>gi|225710178|gb|ACO10935.1| Signal recognition particle 54 kDa protein [Caligus rogercresseyi]
          Length = 509

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   ++ +  +  +D+ V     +EL   L+ +D+ + +  K+ E +      
Sbjct: 3   LADLGRKINNALSSLSKATIVDEEVLNGMLKELCAALLEADVNIRLVAKLRENVRGVINF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A+ ++ ++++ + V   + K++ P  +PF      R +VI+ VG+   GKTT   KL
Sbjct: 63  EEMAQGLNKRQIIKEAVYLELVKLVDPGVEPF-VPKKGRANVIMFVGLQDSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E     + 
Sbjct: 122 AWYYQKKGWKACLVCADTFRAGAYDQLKQNATKARIPFYGSYTEPDPVVIANEGVNTFKE 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR +    L   +  +   +       P +++ V+DA+ GQ    Q   
Sbjct: 182 EGFEIIIVDTSGRHYQEDALFEEMLAVSNAVN------PDNIIFVMDASIGQACEAQSRA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I++K+D  A+GGG +  V   K PV F+G GE I+D EPF  K F   + 
Sbjct: 236 FKEKVDVGSVIISKLDSHAKGGGALSAVAATKSPVVFIGTGEHIDDFEPFKTKPFVQKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|302338435|ref|YP_003803641.1| signal recognition particle-docking protein FtsY [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635620|gb|ADK81047.1| signal recognition particle-docking protein FtsY [Spirochaeta
           smaragdinae DSM 11293]
          Length = 291

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 110/291 (37%), Positives = 168/291 (57%), Gaps = 7/291 (2%)

Query: 27  KLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
            L + I  ++S +  LD+   +ELED LI SD+G   A  +V+ L   + A+ +    +L
Sbjct: 5   SLGKKIRGLLSRKGALDEAFYDELEDTLIESDLGARTAMDLVDSLRDSKEARGMGESEIL 64

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVM 143
               + + + L+P +K    DF  +   +ILV+GVNGVGKTT I K+++   D  G   +
Sbjct: 65  ----DYLKRQLLPYTKAAKLDFRDKKRALILVLGVNGVGKTTTIAKMARYFHDAQGKSCV 120

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           LAAGDTFR+AAIDQL +  +R     V  + G+D  A+ Y+A + A ++  ++++ DTAG
Sbjct: 121 LAAGDTFRAAAIDQLLVHGERLGVRVVHQQPGADPGAVIYDALESAVSRGEELVLADTAG 180

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R+HN + L+  + K+ +++        +  L V+D TTGQNALRQ E+FH   G   L+M
Sbjct: 181 RMHNKANLIRELQKIHKIVGAKIGTENYCKLLVIDTTTGQNALRQAELFHEAVGVDALVM 240

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            K D  A+GG +IPI  T  IPV F+G GEG  DL  F ++ +   + G  
Sbjct: 241 AKYDSAAKGGIIIPIQRTLSIPVAFVGTGEGYGDLALFDSESYLDSLLGIG 291


>gi|121603800|ref|YP_981129.1| signal recognition particle-docking protein FtsY [Polaromonas
           naphthalenivorans CJ2]
 gi|120592769|gb|ABM36208.1| signal recognition particle-docking protein FtsY [Polaromonas
           naphthalenivorans CJ2]
          Length = 390

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 185/316 (58%), Gaps = 18/316 (5%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E   W  KL +G   T       I+ + +  ++D+ + E+LE  L+ +D GV+  + ++ 
Sbjct: 81  ERQRWFGKLQEGLRKT----GSSISTVFTGSQIDEQLYEDLETALLMADTGVSATEHLLA 136

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           ++  +     ++    + + + E I  +L PL +P        P VI+V GVNG GKTT 
Sbjct: 137 DVRRRVKDGGMTHPVAVRNALIESITVLLKPLERPLVIG-EFVPTVIMVTGVNGAGKTTS 195

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL++ +++ G  V+LAA DTFR+AA +QL +WADR + + V S+   D AA++++A  
Sbjct: 196 IGKLTRHLANEGASVLLAAADTFRAAAREQLSVWADRNTVEIV-SQENGDPAAVSFDAVT 254

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A+  DV+++DTAGRL     LM  + K+ RV+++ D  APH VL V+D  TGQNAL 
Sbjct: 255 AGKARGKDVVLVDTAGRLPTQLHLMEELRKIKRVVQKADATAPHEVLLVIDGNTGQNALA 314

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK-----------IPVYFLGVGEGIN 296
           QV+ F      TGL++TK+DGTA+GG L  I +  +           + VYF+GVGE + 
Sbjct: 315 QVKAFDDTLQLTGLVVTKLDGTAKGGVLAAIALWARERAKASPGLRPVAVYFIGVGEKLE 374

Query: 297 DLEPFVAKDFSAVITG 312
           DLE F A++F+  + G
Sbjct: 375 DLETFNAREFAQALLG 390


>gi|515681|gb|AAA66200.1| signal recognition particle 54 kDa subunit [Arabidopsis thaliana]
          Length = 495

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 142/308 (46%), Gaps = 15/308 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           + +L  G      ++      II  + L++ + E +   L++SD+   + +++   +   
Sbjct: 3   LAELGGGITRAIQQMSNV--TIIDEKALNECLNE-ITRALLQSDVSFPLVKEMQSNIKKI 59

Query: 74  RYAKDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +D++       + E      + KML P  KP       +  V++ VG+ G GKTT  
Sbjct: 60  VNLEDLAAGHNKRRIIEQAIFSELCKMLDP-GKPAFAPKKRKASVVMFVGLQGAGKTTTC 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            K +      G K  L   DTFR+ A DQLK  A +    F  S   SD   +A E    
Sbjct: 119 TKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDT 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q
Sbjct: 179 FKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQ 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F  K F +
Sbjct: 233 AQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVS 292

Query: 309 VITGCLDY 316
            + G  D+
Sbjct: 293 RLLGMGDW 300


>gi|15836678|ref|NP_297366.1| signal recognition particle protein [Xylella fastidiosa 9a5c]
 gi|9104846|gb|AAF82886.1|AE003861_3 signal recognition particle protein [Xylella fastidiosa 9a5c]
          Length = 434

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/283 (29%), Positives = 147/283 (51%), Gaps = 16/283 (5%)

Query: 42  DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIH 93
           ++ +RE   E+   L+ +D+ ++V Q ++E +  +   ++V       Q ++  V + + 
Sbjct: 3   EENIREATREVRIALLEADVALSVVQALIERIKIRALGQEVFKSLTPGQALIKVVRDELA 62

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRS 152
            ++   +   N +    P VIL+ G+ G GKT+++GKL+K + +   K VM+ + D +R 
Sbjct: 63  AVMGDSASELNLNVPA-PAVILLAGLQGAGKTSMVGKLAKYLKEKRKKKVMVVSADVYRP 121

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL+I +++ +     S +  +   + + A   A+   VDVL++DTAGRL  +  +M
Sbjct: 122 AAIEQLRILSEQVNVLCFPSSVEQNPVDIVHAAIADAKKSFVDVLLVDTAGRLAIDQGMM 181

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             I  +       D   P   L V+D+ TGQ+A    + F      TG+I+TK DG ARG
Sbjct: 182 DEIKALH------DTLVPVETLFVVDSMTGQDAANTAKAFSEALPLTGVILTKTDGDARG 235

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG + +      P+ F+G GE ++DL+ F     +  I    D
Sbjct: 236 GGALSVRYITGCPIKFVGTGEKVDDLDVFHPDRAAKRILDMGD 278


>gi|288559422|ref|YP_003422908.1| signal recognition particle SRP54 protein [Methanobrevibacter
           ruminantium M1]
 gi|288542132|gb|ADC46016.1| signal recognition particle SRP54 protein [Methanobrevibacter
           ruminantium M1]
          Length = 444

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 142/304 (46%), Gaps = 19/304 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S    L   +  +     +D      V ++++  LI+SD+ + +  K+ + +  +   
Sbjct: 2   LGSLGENLTNTMKKLAGMSVIDKKVIKEVVKDIQRALIQSDVNIQLVLKLSKTIEKRALE 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++        + V+  + E +  +L   ++      + +P  IL +G+ G GKTT IGKL
Sbjct: 62  EEPPKGITPREHVITIIYEEMVNLLGSEAQELK--ITEKPFKILFLGLQGSGKTTTIGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            + +   G    +   DT+R AA +QLK   +             DA  LA +  K  + 
Sbjct: 120 CRYLQRKGFSPAVVCTDTWRPAAYEQLKQLTEEMQIQLYGDPDNKDALDLAEKGLKHFKN 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K  ++I DTAGR  N   L+  + K+ +++       P   + V+DAT GQ A  Q + 
Sbjct: 180 QK--IIIFDTAGRHKNEEDLIEEMNKLDKIIN------PSESMLVIDATIGQQAGEQAKA 231

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I++K+DGTA+GGG +  V     P+ F+G GEGI+D E F  + F + + 
Sbjct: 232 FSQATDIGSIIISKLDGTAKGGGALSAVAETGAPIKFIGTGEGIDDFEAFDPERFISRLL 291

Query: 312 GCLD 315
           G  D
Sbjct: 292 GMGD 295


>gi|229582222|ref|YP_002840621.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus
           islandicus Y.N.15.51]
 gi|259511387|sp|C3NHT9|SRP54_SULIN RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|228012938|gb|ACP48699.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus
           islandicus Y.N.15.51]
          Length = 447

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 142/302 (47%), Gaps = 14/302 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
             +    +++ +T      +  D   +EL+  LI SD+ V +   +  ++  +   +   
Sbjct: 2   LENIRDAVRKFLTRSTPYEKAVDEFIKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPP 61

Query: 81  -----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 +  +  V + + K+     +P N + +  P +I++VGV G GKTT  GKL+   
Sbjct: 62  SVLERKEWFISIVYDELSKLFGGDKEP-NVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFY 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV L A D +R AA DQL    ++            +A  +A +        K+D
Sbjct: 121 KRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMD 180

Query: 196 VLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           ++I+DTAGR      + L+  + ++   LK      P  V+ V+DA+ GQ A      FH
Sbjct: 181 IIIVDTAGRHGYGEETKLLEEMKEIYEALK------PDDVILVIDASIGQKAYDLASRFH 234

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             +    +I+TKMDGTA+GGG +  V      + F+G GE I++LE F AK + + I G 
Sbjct: 235 QASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGM 294

Query: 314 LD 315
            D
Sbjct: 295 GD 296


>gi|325690810|gb|EGD32811.1| cell division protein FtsY [Streptococcus sanguinis SK115]
          Length = 506

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 173/307 (56%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
           S+  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  +
Sbjct: 196 SQEESTQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVASSL 255

Query: 67  VEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            EEL  +   ++      L    + +L+             +F +   V+L VGVNGVGK
Sbjct: 256 TEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVNGVGK 315

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++ Y+
Sbjct: 316 TTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASVVYD 375

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++AQ+++VDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQN
Sbjct: 376 GMERAQSEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDASTGQN 435

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F ++
Sbjct: 436 ALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSE 495

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 496 NFMKGLL 502


>gi|332358946|gb|EGJ36767.1| cell division protein FtsY [Streptococcus sanguinis SK49]
          Length = 512

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 120/308 (38%), Positives = 172/308 (55%), Gaps = 3/308 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQK 65
             +  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  
Sbjct: 201 PPQEESTQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVASS 260

Query: 66  IVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + EEL  +   ++      L    + +L+             +F +   V+L VGVNGVG
Sbjct: 261 LTEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVNGVG 320

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++ Y
Sbjct: 321 KTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASVVY 380

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQ
Sbjct: 381 DGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDASTGQ 440

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +
Sbjct: 441 NALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNS 500

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 501 ENFMKGLL 508


>gi|58617285|ref|YP_196484.1| Signal recognition particle protein [Ehrlichia ruminantium str.
           Gardel]
 gi|58416897|emb|CAI28010.1| Signal recognition particle protein [Ehrlichia ruminantium str.
           Gardel]
          Length = 450

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 153/305 (50%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S +  L   +  + S   +     D V EE++  L+ +D+ ++V +  + ++  K   
Sbjct: 2   FESLTSSLTAVLQKMQSKHVISSEDFDSVMEEVKVALLEADVALSVVKSFINDIKDKIVG 61

Query: 77  KD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130
           +      +  Q V+  + + + ++L    +  + D S +P  VI++VG+ GVGKTT   K
Sbjct: 62  ETTIKGVLPTQMVIKKIQDCLIEILG--VEKQDLDLSAKPFAVIMMVGLQGVGKTTTTAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++ +   +V++A+ D +R AA  QL+I   +     +          +A  A   A+
Sbjct: 120 LALRLKNKKKEVLMASLDLYRPAAQTQLEILGKQIDVKTLPIIEKQQPIDIAKRAITVAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +VLI DTAGRLH + I+M  +  +  +       +P  V+ V DA  GQ+A+  V+
Sbjct: 180 ESNCNVLIFDTAGRLHVDEIMMEELKAIKAI------TSPSEVILVADAMIGQDAVNVVK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F +  G TG+I+T++DG +RGG  + + ++   P+ FL  GE ++DL+ F     +  I
Sbjct: 234 SFDSNIGITGIILTRIDGDSRGGAALSMKMSTGTPIKFLATGEKLSDLDDFYPDRIARRI 293

Query: 311 TGCLD 315
               D
Sbjct: 294 LNMGD 298


>gi|299138352|ref|ZP_07031531.1| signal recognition particle-docking protein FtsY [Acidobacterium
           sp. MP5ACTX8]
 gi|298599598|gb|EFI55757.1| signal recognition particle-docking protein FtsY [Acidobacterium
           sp. MP5ACTX8]
          Length = 334

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 179/311 (57%), Gaps = 3/311 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVA 61
           +Q  +S+   +  ++ +  + T   L E I  +++ +R +D+   ++LE +L+ SDIG  
Sbjct: 24  SQPESSKPRGFFDRMKQAVSRTREALSESIGSVVALTREIDENNLDDLELVLLASDIGSV 83

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              +I+  L  +   + ++    L  +    + ++L  ++ P     S  P VI++VGVN
Sbjct: 84  TTGEIITHLRERALRQGINDGAELKSLLKAELRRILDSVAHPIAHP-STPPEVIMMVGVN 142

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT  GKL+      G  V+L A DTFR+AAI+QL++WA R+    + +  G D +A
Sbjct: 143 GTGKTTTTGKLAALYRSQGRSVLLCAADTFRAAAIEQLEVWAGRSGVQLIKTRQGGDPSA 202

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
             ++A   A+A+  ++LI+DTAGRLH  S LM  + KM R  ++L P APH  L V+DAT
Sbjct: 203 ALFDACTAAKARATEILIVDTAGRLHTKSDLMKELDKMRRTAEKLIPGAPHQTLLVMDAT 262

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN L+Q  +F   A  TG+++TK+DGTA+GG ++ I     +PV + GVGE + D+ P
Sbjct: 263 TGQNGLQQARLFTEAARVTGIVLTKLDGTAKGGIVVAIARELGLPVLYAGVGEKMEDILP 322

Query: 301 FVAKDFSAVIT 311
           F    F   + 
Sbjct: 323 FDPAAFVDSLL 333


>gi|322391784|ref|ZP_08065249.1| cell division protein FtsY [Streptococcus peroris ATCC 700780]
 gi|321145264|gb|EFX40660.1| cell division protein FtsY [Streptococcus peroris ATCC 700780]
          Length = 498

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 119/302 (39%), Positives = 172/302 (56%), Gaps = 7/302 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 195 EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 254

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVVGVNGVGKTTVIG 129
              ++      L  V  +I K++    K  N++    F     V+L VGVNGVGKTT IG
Sbjct: 255 AKLENAKKPEALRRV--IIEKLVDLYEKDGNYNESINFQDGLTVMLFVGVNGVGKTTSIG 312

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A
Sbjct: 313 KLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERA 372

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+ VD+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+TGQNAL Q 
Sbjct: 373 VAEGVDILMIDTAGRLQNKENLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQA 432

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   
Sbjct: 433 KEFSKITPVTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKG 492

Query: 310 IT 311
           + 
Sbjct: 493 LL 494


>gi|227827525|ref|YP_002829305.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Sulfolobus islandicus M.14.25]
 gi|229584728|ref|YP_002843230.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus
           islandicus M.16.27]
 gi|238619682|ref|YP_002914508.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus
           islandicus M.16.4]
 gi|259511383|sp|C3N5B0|SRP54_SULIA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|259511384|sp|C4KGX6|SRP54_SULIK RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|259511386|sp|C3MYM8|SRP54_SULIM RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|227459321|gb|ACP38007.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Sulfolobus islandicus M.14.25]
 gi|228019778|gb|ACP55185.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus
           islandicus M.16.27]
 gi|238380752|gb|ACR41840.1| GTP-binding signal recognition particle SRP54 G-domain [Sulfolobus
           islandicus M.16.4]
 gi|323474576|gb|ADX85182.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Sulfolobus islandicus REY15A]
 gi|323477308|gb|ADX82546.1| GTP-binding signal recognition particle SRP54, G-domain [Sulfolobus
           islandicus HVE10/4]
          Length = 447

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 142/302 (47%), Gaps = 14/302 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
             +    +++ +T      +  D   +EL+  LI SD+ V +   +  ++  +   +   
Sbjct: 2   LENIRDAVRKFLTGSTPYEKAVDEFVKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPP 61

Query: 81  -----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 +  +  V + + K+     +P N + +  P +I++VGV G GKTT  GKL+   
Sbjct: 62  SVLERKEWFISIVYDELSKLFGGDKEP-NVNPTKLPFIIMLVGVQGSGKTTTSGKLAYFY 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV L A D +R AA DQL    ++            +A  +A +        K+D
Sbjct: 121 KRRGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMD 180

Query: 196 VLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           ++I+DTAGR      + L+  + ++   LK      P  V+ V+DA+ GQ A      FH
Sbjct: 181 IIIVDTAGRHGYGEETKLLEEMKEIYEALK------PDDVILVIDASIGQKAYDLASRFH 234

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             +    +I+TKMDGTA+GGG +  V      + F+G GE I++LE F AK + + I G 
Sbjct: 235 QASPIGSIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGM 294

Query: 314 LD 315
            D
Sbjct: 295 GD 296


>gi|57239270|ref|YP_180406.1| Signal recognition particle protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579233|ref|YP_197445.1| Signal recognition particle protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161349|emb|CAH58272.1| signal recognition particle protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417859|emb|CAI27063.1| Signal recognition particle protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 450

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 153/305 (50%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S +  L   +  + S   +     D V EE++  L+ +D+ ++V +  + ++  +   
Sbjct: 2   FESLTSSLTAVLQKMQSKHVISSEDFDSVMEEVKVALLEADVALSVVKSFINDIKDRIVG 61

Query: 77  KD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130
           +      +  Q V+  + + + ++L    +  + D S +P  VI++VG+ GVGKTT   K
Sbjct: 62  ETTIKGVLPTQMVIKKIQDCLIEILG--VEKRDLDLSAKPFAVIMMVGLQGVGKTTTTAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++ +   +V++A+ D +R AA  QL+I   +     +          +A  A   A+
Sbjct: 120 LALRLKNKKKEVLMASLDLYRPAAQTQLEILGKQIDVKTLPIIEKQQPVDIAKRAITVAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +VLI DTAGRLH + I+M  +  +  +       +P  V+ V DA  GQ+A+  V+
Sbjct: 180 ESNCNVLIFDTAGRLHVDEIMMEELKAIKAI------TSPSEVILVADAMIGQDAVNVVK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F +  G TG+I+T++DG +RGG  + + ++   P+ FL  GE ++DL+ F     +  I
Sbjct: 234 SFDSNIGITGIILTRIDGDSRGGAALSMKMSTGTPIKFLATGEKLSDLDDFYPDRIARRI 293

Query: 311 TGCLD 315
               D
Sbjct: 294 LNMGD 298


>gi|307706700|ref|ZP_07643506.1| signal recognition particle-docking protein FtsY [Streptococcus
           mitis SK321]
 gi|307617944|gb|EFN97105.1| signal recognition particle-docking protein FtsY [Streptococcus
           mitis SK321]
          Length = 421

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 118/314 (37%), Positives = 175/314 (55%), Gaps = 7/314 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             ++     +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 106 EPEMPQVEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 165

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVV 117
           VA  + EEL  +   ++      L  V  +I K++    K  N+D    F     V+L V
Sbjct: 166 VASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQDGLTVMLFV 223

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 224 GVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKAD 283

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A ++ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     L
Sbjct: 284 PASVVFDGMERAVSEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLAL 343

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D
Sbjct: 344 DASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDD 403

Query: 298 LEPFVAKDFSAVIT 311
           +  F +++F   + 
Sbjct: 404 IGEFNSENFMKGLL 417


>gi|309802108|ref|ZP_07696218.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           dentium JCVIHMP022]
 gi|308221309|gb|EFO77611.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           dentium JCVIHMP022]
          Length = 398

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 174/312 (55%), Gaps = 7/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S I++L    A +     + + +I++   L +   E++ED L+ +D+G   ++
Sbjct: 88  ETPESTGSRIQRLKAKLAKSGNPFGKVLFNILAKDHLSESDWEDVEDTLLLADVGAEASE 147

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----RPHVILVVGVN 120
           ++VEEL         S    +    +     L+        +       +P VI++VGVN
Sbjct: 148 QLVEELRNDARISGQSDPSEVRKALKDKLLKLVGTDTDRRLNADKEGANKPSVIIMVGVN 207

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT  GKL++     G +VM+ A DTFR+AA DQL+ W  +     V S+  G+D A
Sbjct: 208 GTGKTTTAGKLARLFVADGKQVMMGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPA 267

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A+EA +QA+    DV+IIDTAGRL N + LM  +GK+ RV ++  P     VL VLDA
Sbjct: 268 SVAFEASEQAKETHADVIIIDTAGRLQNKANLMDELGKIRRVTEKNLP--VDEVLLVLDA 325

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL 
Sbjct: 326 TTGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLA 385

Query: 300 PFVAKDFSAVIT 311
           PF  + F   I 
Sbjct: 386 PFDPEGFVDGIL 397


>gi|242792738|ref|XP_002482016.1| signal recognition particle protein SRP54 [Talaromyces stipitatus
           ATCC 10500]
 gi|218718604|gb|EED18024.1| signal recognition particle protein SRP54 [Talaromyces stipitatus
           ATCC 10500]
          Length = 534

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 142/309 (45%), Gaps = 22/309 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELL----- 71
                 ++   ++D+  S  +D    D + +E+   L+ +D+ V + Q + + +      
Sbjct: 3   LQDLGRRINAAVSDLTRSNTVDEKAFDDMLKEICSALLSADVNVRLVQSLRKSIKHNVNF 62

Query: 72  ---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                   K   +Q+ ++D    +  ++ P ++PF      R +VI+ VG+ G GKTT  
Sbjct: 63  SSLPSAVNKKRLIQKAVFD---ELVALVNPHAEPFKPK-KGRVNVIMFVGLQGAGKTTTC 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL++     G K  L   DTFR+ A DQLK  A +    +  S   +D   +A E   Q
Sbjct: 119 TKLARHYQMRGFKTALVCADTFRAGAFDQLKQNAIKAKIPYYGSLTQTDPVVVAAEGVAQ 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + ++ D++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q
Sbjct: 179 FKKERFDIIIVDTSGRHKQEEDLFEEMTQIQNAV------RPDQTILVLDSTIGQAAEAQ 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F  
Sbjct: 233 SSAFKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQ 292

Query: 309 VITGCLDYG 317
            + G  D  
Sbjct: 293 KLLGMGDMA 301


>gi|323475112|gb|ADX85718.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus REY15A]
 gi|323477843|gb|ADX83081.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus HVE10/4]
          Length = 310

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 93/295 (31%), Positives = 158/295 (53%), Gaps = 18/295 (6%)

Query: 29  KEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
              I D+   + + +       EEL   L+ SD+   VA+KI+E+L      K V     
Sbjct: 21  GGSIFDVFRYKEIKEKDIEDFVEELRYQLLESDVSFEVAEKILEDLKENIIGKKVRRSED 80

Query: 85  L-YDVSELIHKMLMPL---SKPFN----WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           L   V + + K +  +   +KP N       S +P++I+  G+NGVGKTT I K +  + 
Sbjct: 81  LERIVKDSLKKSITEIITKNKPMNVLEEIKKSTKPYIIIFFGINGVGKTTTIAKFAYMLK 140

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             GL  +++A DTFR+AA +QL+I A       +  + G D A++AY+A + A+++ +DV
Sbjct: 141 KNGLSCIISASDTFRAAAQEQLEIHARNLEIPLIKGKYGGDPASVAYDAIRAAKSRGIDV 200

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDTAGR+H ++ L+  + +++ +        P+  + VLD+  G +AL Q + F    
Sbjct: 201 VLIDTAGRMHTDTDLVNELKRVVNI------TRPNLKILVLDSLGGNDALEQAKYFENNV 254

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G   +I+TK+D   +GG ++ +      PV +LGVG+  +DL PF A+ F   + 
Sbjct: 255 GFDLVILTKVDADVKGGVILSLAYELNKPVGYLGVGQTYDDLIPFNAEWFIQRLF 309


>gi|319939362|ref|ZP_08013722.1| signal recognition particle-docking protein FtsY [Streptococcus
           anginosus 1_2_62CV]
 gi|319811348|gb|EFW07643.1| signal recognition particle-docking protein FtsY [Streptococcus
           anginosus 1_2_62CV]
          Length = 497

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 170/308 (55%), Gaps = 3/308 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQK 65
           + +  +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  
Sbjct: 186 SIQKETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLITSDVGVQVASN 245

Query: 66  IVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + E L  +   ++      L    + +L+             +      V+L VGVNGVG
Sbjct: 246 LTEALRQEARLENAKKPEALRRVIIEKLVDIYEKDGQFNEKINLQDGLTVMLFVGVNGVG 305

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K   AG KVML A DTFR+ A+ QL  W  R     V     SD A++ Y
Sbjct: 306 KTTSIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGPEKSDPASVVY 365

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  ++A+A+ VD+L+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQ
Sbjct: 366 DGMERAKAENVDILMIDTAGRLQNKDNLMAELEKIGRIIKRVDPAAPHETFLALDASTGQ 425

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +
Sbjct: 426 NALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGVFNS 485

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 486 ENFMKGLL 493


>gi|323714481|pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
           Recognition Particle
          Length = 454

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 153/306 (50%), Gaps = 20/306 (6%)

Query: 22  ASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
                 L + +  +       ++L   V ++++  LI++D+ V +  K+ +E+  +   +
Sbjct: 2   DKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEE 61

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
                    + ++  V E + K+L   +K    +   + +VIL+VG+ G GKTT   KL+
Sbjct: 62  KTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELN-PKKQNVILLVGIQGSGKTTTAAKLA 120

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQAQA 191
           + +   GLK  L A DT+R AA +QLK  A++        E  +     +  E  ++ + 
Sbjct: 121 RYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK- 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            K DVLIIDTAGR      L+  + ++  +        P  ++ V+D T GQ A  Q + 
Sbjct: 180 -KADVLIIDTAGRHKEEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKA 232

Query: 252 FHAVAG-TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           F    G    +I+TK+DG+A+GGG +  V   K P+ F+G+GEGI+DLEPF  K F + +
Sbjct: 233 FKEAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRL 292

Query: 311 TGCLDY 316
            G  D 
Sbjct: 293 LGMGDL 298


>gi|39654777|pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
           Implications For Inter-Domain Communication
 gi|39654779|pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
           Implications For Inter-Domain Communication
 gi|39654781|pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
           Implications For Inter-Domain Communication
 gi|39654783|pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
           Implications For Inter-Domain Communication
 gi|39654785|pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
           Implications For Inter-Domain Communication
 gi|39654786|pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
           Implications For Inter-Domain Communication
          Length = 440

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 143/302 (47%), Gaps = 14/302 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
             +    +++ +T      +  D   ++L+  LI SD+ V +   +  ++  +   +   
Sbjct: 10  LENIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPP 69

Query: 81  -----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 +  +  V + + K+     +P N + +  P +I++VGV G GKTT  GKL+   
Sbjct: 70  SVLERKEWFISIVYDELSKLFGGDKEP-NVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFY 128

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV L A D +R AA DQL    ++            +   +A +        K+D
Sbjct: 129 KKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMD 188

Query: 196 VLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           ++I+DTAGR      + L+  + +M  VLK      P  V+ V+DA+ GQ A      FH
Sbjct: 189 IIIVDTAGRHGYGEETKLLEEMKEMYDVLK------PDDVILVIDASIGQKAYDLASRFH 242

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             +    +I+TKMDGTA+GGG +  VV     + F+G GE I++LE F AK F + I G 
Sbjct: 243 QASPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGM 302

Query: 314 LD 315
            D
Sbjct: 303 GD 304


>gi|212535310|ref|XP_002147811.1| signal recognition particle protein SRP54 [Penicillium marneffei
           ATCC 18224]
 gi|210070210|gb|EEA24300.1| signal recognition particle protein SRP54 [Penicillium marneffei
           ATCC 18224]
          Length = 537

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 140/309 (45%), Gaps = 22/309 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELL----- 71
                 ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + +      
Sbjct: 3   LQDLGRRINAAVNDLTRSNTLDEKAFDDMLKEICSALLSADVNVRLVQNLRKSIKHSVNF 62

Query: 72  ---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                   K   +Q+ ++D    +  ++ P + PF      R +VI+ VG+ G GKTT  
Sbjct: 63  SSLPSAVNKKRLIQKAVFD---ELVALVNPHADPFKPK-KGRVNVIMFVGLQGAGKTTTC 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL++     G K  L   DTFR+ A DQLK  A +    +  S   +D   +A E   Q
Sbjct: 119 TKLARHYQMRGFKTALVCADTFRAGAFDQLKQNAIKAKIPYYGSLTQTDPVVVAAEGVAQ 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + ++ D++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q
Sbjct: 179 FKKERFDIIIVDTSGRHKQEEDLFEEMTQIQNAV------RPDQTILVLDSTIGQAAEAQ 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F  
Sbjct: 233 SSAFKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQ 292

Query: 309 VITGCLDYG 317
            + G  D  
Sbjct: 293 KLLGMGDMA 301


>gi|284175659|ref|ZP_06389628.1| Signal recognition particle protein subunit SRP54 (srp54)
           [Sulfolobus solfataricus 98/2]
 gi|261602558|gb|ACX92161.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Sulfolobus solfataricus 98/2]
          Length = 447

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 143/302 (47%), Gaps = 14/302 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
             +    +++ +T      +  D   ++L+  LI SD+ V +   +  ++  +   +   
Sbjct: 2   LENIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPP 61

Query: 81  -----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 +  +  V + + K+     +P N + +  P +I++VGV G GKTT  GKL+   
Sbjct: 62  SVLERKEWFISIVYDELSKLFGGDKEP-NVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFY 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV L A D +R AA DQL    ++            +   +A +        K+D
Sbjct: 121 KKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMD 180

Query: 196 VLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           ++I+DTAGR      + L+  + +M  VLK      P  V+ V+DA+ GQ A      FH
Sbjct: 181 IIIVDTAGRHGYGEETKLLEEMKEMYDVLK------PDDVILVIDASIGQKAYDLASRFH 234

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             +    +I+TKMDGTA+GGG +  VV     + F+G GE I++LE F AK F + I G 
Sbjct: 235 QASPIGSIIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGM 294

Query: 314 LD 315
            D
Sbjct: 295 GD 296


>gi|158430970|pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
           Of M. Jannaschii
 gi|158430971|pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
           Of M. Jannaschii
          Length = 432

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 153/306 (50%), Gaps = 20/306 (6%)

Query: 22  ASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
                 L + +  +       ++L   V ++++  LI++D+ V +  K+ +E+  +   +
Sbjct: 2   DKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEE 61

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
                    + ++  V E + K+L   +K    +   + +VIL+VG+ G GKTT   KL+
Sbjct: 62  KTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELN-PKKQNVILLVGIQGSGKTTTAAKLA 120

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQAQA 191
           + +   GLK  L A DT+R AA +QLK  A++        E  +     +  E  ++ + 
Sbjct: 121 RYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK- 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            K DVLIIDTAGR      L+  + ++  +        P  ++ V+D T GQ A  Q + 
Sbjct: 180 -KADVLIIDTAGRHKEEKGLLEEMKQIKEITN------PDEIILVIDGTIGQQAGIQAKA 232

Query: 252 FHAVAG-TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           F    G    +I+TK+DG+A+GGG +  V   K P+ F+G+GEGI+DLEPF  K F + +
Sbjct: 233 FKEAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRL 292

Query: 311 TGCLDY 316
            G  D 
Sbjct: 293 LGMGDL 298


>gi|18402407|ref|NP_564535.1| signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)
           [Arabidopsis thaliana]
 gi|21542461|sp|P49967|SR543_ARATH RecName: Full=Signal recognition particle 54 kDa protein 3;
           Short=SRP54
 gi|17386102|gb|AAL38597.1|AF446864_1 At1g48900/F27K7_8 [Arabidopsis thaliana]
 gi|15450461|gb|AAK96524.1| At1g48900/F27K7_8 [Arabidopsis thaliana]
 gi|15810010|gb|AAL06932.1| At1g48900/F27K7_8 [Arabidopsis thaliana]
 gi|332194242|gb|AEE32363.1| signal recognition particle subunit SRP54 [Arabidopsis thaliana]
          Length = 495

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 138/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    ++   I  + +   +D+        E+   L++SD+   + +++   +      
Sbjct: 3   LAELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +D++       + E      + KML P  KP       +  V++ VG+ G GKTT   K 
Sbjct: 63  EDLAAGHNKRRIIEQAIFSELCKMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S   SD   +A E     + 
Sbjct: 122 AYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F  K F + + 
Sbjct: 236 FKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|15897850|ref|NP_342455.1| Signal recognition particle protein subunit SRP54 (srp54)
           [Sulfolobus solfataricus P2]
 gi|21362961|sp|Q97ZE7|SRP54_SULSO RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|13814155|gb|AAK41245.1| Signal recognition particle protein subunit SRP54 (srp54)
           [Sulfolobus solfataricus P2]
          Length = 447

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 143/302 (47%), Gaps = 14/302 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
             +    +++ +T      +  D   ++L+  LI SD+ V +   +  ++  +   +   
Sbjct: 2   LENIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPP 61

Query: 81  -----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 +  +  V + + K+     +P N + +  P +I++VGV G GKTT  GKL+   
Sbjct: 62  SVLERKEWFISIVYDELSKLFGGDKEP-NVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFY 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV L A D +R AA DQL    ++            +   +A +        K+D
Sbjct: 121 KKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMD 180

Query: 196 VLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           ++I+DTAGR      + L+  + +M  VLK      P  V+ V+DA+ GQ A      FH
Sbjct: 181 IIIVDTAGRHGYGEETKLLEEMKEMYDVLK------PDDVILVIDASIGQKAYDLASRFH 234

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             +    +I+TKMDGTA+GGG +  VV     + F+G GE I++LE F AK F + I G 
Sbjct: 235 QASPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGM 294

Query: 314 LD 315
            D
Sbjct: 295 GD 296


>gi|47458973|ref|YP_015835.1| cell division protein ftsY [Mycoplasma mobile 163K]
 gi|47458301|gb|AAT27624.1| cell division protein ftsY [Mycoplasma mobile 163K]
          Length = 426

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 115/305 (37%), Positives = 175/305 (57%), Gaps = 7/305 (2%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E  + I K   G   +S  L   + ++ +   ++DD   EELE++LI SDI V +   I+
Sbjct: 108 EKENKINKYIAGLDKSSSALSTRVMELQNRYNKIDDDFFEELEEILIMSDISVNLVFTII 167

Query: 68  EELLTKRYAKDVSVQRVLYDVSE----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           EE+      ++VS  +++ ++      +I+     +      +   R +VIL+VGVNG G
Sbjct: 168 EEIKKVVKIENVSDPKLIGEIIADKLFVIYTNNSIVDTNLKIE-KGRLNVILMVGVNGSG 226

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALA 182
           KTT I KL+        K+++AAGDTFR+ A++QL IWA+R   D V   + G D +++ 
Sbjct: 227 KTTTIAKLANMYKQKSYKILIAAGDTFRAGAVEQLGIWANRLEVDIVKPDKEGQDPSSVV 286

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A ++A+ +  D+LIIDTAGRL N   LM  + K+ + + R  P APH  L VLDAT G
Sbjct: 287 FKAMQKAKDEIYDLLIIDTAGRLQNKVNLMNELAKINQTISRFLPEAPHESLLVLDATNG 346

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q   F  V   +G+++TKMDGT++GG +I I     I V  LG+GE ++DL+ F 
Sbjct: 347 QNALSQASAFKEVTPLSGIVLTKMDGTSKGGIIISIKDLVNIDVKLLGLGEKMDDLQEFD 406

Query: 303 AKDFS 307
              F 
Sbjct: 407 LDAFI 411


>gi|297743482|emb|CBI36349.3| unnamed protein product [Vitis vinifera]
          Length = 431

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 139/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            +     +   +  + ++  +D+ V  E    +   L++SD+   + + +   +      
Sbjct: 3   LSELGGSISRALQQMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNIKKLVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            D++       + +      + KML P  KP       +  V++ VG+ G GKTT   K 
Sbjct: 63  DDLAAGHNKRKIIQQAIFQELCKMLDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + 
Sbjct: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L   + ++           P  V+ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEA------TRPDLVIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F  K F + + 
Sbjct: 236 FRQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|312874442|ref|ZP_07734472.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 2052A-d]
 gi|325911862|ref|ZP_08174266.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners UPII 143-D]
 gi|311090054|gb|EFQ48468.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 2052A-d]
 gi|325476368|gb|EGC79530.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners UPII 143-D]
          Length = 337

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 173/314 (55%), Gaps = 11/314 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
            + ++  +         +G   TS  L E +   ++  R +D+   ++LEDLLI +D+G 
Sbjct: 19  KDSEITKKDNDIQDTYDRGLKKTSNSLGEKLNSFLAQFRTIDEDFFDDLEDLLIEADVGY 78

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHV 113
             A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S         P V
Sbjct: 79  ETAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILKTGDMPAV 135

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R     +   
Sbjct: 136 FLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVDVQVISGN 195

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  P  P  +
Sbjct: 196 TNADPSSVVYEGLECAVNNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKIPDQPQEI 255

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+D +TGQNAL Q + F  +   TGL++TK+DG+++GG ++ I     +PV  +G+GE
Sbjct: 256 LLVIDGSTGQNALNQAKEFDKITKLTGLVLTKLDGSSKGGIVLAIRNEMSLPVKLVGLGE 315

Query: 294 GINDLEPFVAKDFS 307
              DL  F A+ F+
Sbjct: 316 KAEDLAEFDAEKFA 329


>gi|306823813|ref|ZP_07457187.1| cell division protein FtsY [Bifidobacterium dentium ATCC 27679]
 gi|304552811|gb|EFM40724.1| cell division protein FtsY [Bifidobacterium dentium ATCC 27679]
          Length = 398

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 7/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S I++L    A +     + + +I++   L +   E++ED L+ +D+G   ++
Sbjct: 88  ETPESTGSRIQRLKAKLAKSGNPFGKVLFNILAKDHLSESDWEDVEDTLLLADVGAEASE 147

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----RPHVILVVGVN 120
           ++VEEL         S    +    +     L+        +       +P VI++VGVN
Sbjct: 148 QLVEELRNDARISGQSDPSEVRKALKDKLLKLVGTDTDRRLNADKEGANKPSVIIMVGVN 207

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT  GKL++     G +VM+ A DTFR+AA DQL+ W  +     V S+  G+D A
Sbjct: 208 GTGKTTTAGKLARLFVADGKQVMMGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPA 267

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A+EA +QA+    DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDA
Sbjct: 268 SVAFEASEQAKETHADVLIIDTAGRLQNKANLMDELGKIRRVTEKNLP--VDEVLLVLDA 325

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL 
Sbjct: 326 TTGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLA 385

Query: 300 PFVAKDFSAVIT 311
           PF  + F   I 
Sbjct: 386 PFDPEGFVDGIL 397


>gi|171676350|ref|XP_001903128.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936241|emb|CAP60900.1| unnamed protein product [Podospora anserina S mat+]
          Length = 516

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 146/306 (47%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   +TD+  +  LD    D + +++   L+ +D+ V +  ++ +++      
Sbjct: 3   LQDLGRRINAAVTDLTRAPNLDEKAFDSMLKQICSALLEADVNVRLVGRLRKDIKAAVNF 62

Query: 77  KDVSVQRVLYDVSEL-----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           KD+        + +      +  ++ P ++PF      + +VI+ VG+ G GKTT   KL
Sbjct: 63  KDLPPAVNKKRLIQKAVFDHLVDLVDPHAEPFKPK-KGKSNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G +  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + 
Sbjct: 122 ARHYQSRGFRACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVAKEGVDKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ +V+I+DT+GR    S L   +  +   +K      P   + VLD++ GQ A  Q   
Sbjct: 182 ERFEVIIVDTSGRHRQESALFQEMMDIQNAIK------PDETIMVLDSSIGQQAEGQAMA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK DG A GGG I  V   + P+ F+G GE + DLE FV K+F + + 
Sbjct: 236 FKEAADFGAIIITKTDGHAAGGGAISAVAATRTPIVFIGTGEHMLDLERFVPKNFISKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|171741540|ref|ZP_02917347.1| hypothetical protein BIFDEN_00625 [Bifidobacterium dentium ATCC
           27678]
 gi|283455129|ref|YP_003359693.1| signal recognition particle [Bifidobacterium dentium Bd1]
 gi|171277154|gb|EDT44815.1| hypothetical protein BIFDEN_00625 [Bifidobacterium dentium ATCC
           27678]
 gi|283101763|gb|ADB08869.1| FtsY signal recognition particle [Bifidobacterium dentium Bd1]
          Length = 398

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 7/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S I++L    A +     + + +I++   L +   E++ED L+ +D+G   ++
Sbjct: 88  ETPESTGSRIQRLKAKLAKSGNPFGKVLFNILAKDHLSESDWEDVEDTLLLADVGAEASE 147

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----RPHVILVVGVN 120
           ++VEEL         S    +    +     L+        +       +P VI++VGVN
Sbjct: 148 QLVEELRNDARISGQSDPSEVRKALKDKLLKLVGTDTDRRLNADKEGANKPSVIIMVGVN 207

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT  GKL++     G +VM+ A DTFR+AA DQL+ W  +     V S+  G+D A
Sbjct: 208 GTGKTTTAGKLARLFVADGKQVMMGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPA 267

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A+EA +QA+    DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDA
Sbjct: 268 SVAFEASEQAKETHADVLIIDTAGRLQNKANLMDELGKIRRVTEKNLP--VDEVLLVLDA 325

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +DL 
Sbjct: 326 TTGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPDDLA 385

Query: 300 PFVAKDFSAVIT 311
           PF  + F   I 
Sbjct: 386 PFDPEGFVDGIL 397


>gi|315425555|dbj|BAJ47216.1| signal recognition particle subunit SRP54 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 466

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 144/305 (47%), Gaps = 14/305 (4%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S    LKE     ++S   D    EEL    +  L+ +D+ V + QKI E +  + 
Sbjct: 25  SSFSSMGRSLKEVFRKFLASPSADKSSVEELVRGIQRSLLMADVKVELVQKISERIRARA 84

Query: 75  YAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGK 130
           + + +       D V++++++ L+ L       FS    +P+V++++G+ G GKTT   K
Sbjct: 85  FEEKLPPGVSRKDSVAKIVYEELINLLGGKPAQFSTGGKKPYVVMLLGIQGTGKTTTAAK 144

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G KV +   DT+R AA  QLK   +            ++   +A +  +  +
Sbjct: 145 LANYLKVGGYKVGVVCADTYRPAAYQQLKHLLEPRQIPVYGEPENNNPVEIARKGLEHFK 204

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDV+IIDTAGR      LM  +  + + LK      P   + V+D T GQ A     
Sbjct: 205 QMGVDVVIIDTAGRHRQQESLMDEMKMLEKELK------PDENILVIDGTIGQQAGAHAA 258

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH       +I+TK+D + RGGG +  V     P+ F+GVGE + D +PF    + A +
Sbjct: 259 AFHKATPVGSIIITKLDTSGRGGGALAAVAETGAPIKFVGVGESVEDFQPFNPSSYIASL 318

Query: 311 TGCLD 315
            G  D
Sbjct: 319 LGMPD 323


>gi|262277884|ref|ZP_06055677.1| signal recognition particle protein [alpha proteobacterium HIMB114]
 gi|262224987|gb|EEY75446.1| signal recognition particle protein [alpha proteobacterium HIMB114]
          Length = 453

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 140/305 (45%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + K++   +      RLD+   +E    +   L+ SD+ ++V +K +E++  K   
Sbjct: 2   FENLTDKIESAFSFFNKITRLDEKQADEGLRKIRQALLESDVALSVTKKFIEDVKPKIIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q ++  V++ +  +L       N + +  P  ILVVG+ G GKTT   KL
Sbjct: 62  QEVLKSITPGQMIIKIVNDELINVLGSEKSDLNLE-NVPPVKILVVGLQGSGKTTSTAKL 120

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      KV++ + D +R AA  QL++  +      +    G     ++  A     
Sbjct: 121 AHFLQKKLTKKVLMTSLDIYRPAAQQQLQVLGNDNDIKTLPIIEGQLPVEISKRALNAVS 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I DTAGR   +  +M  + ++       +   PH ++ V D+ TGQ+A+   +
Sbjct: 181 LSGEDVVIFDTAGRTQIDQQMMMELKQL------ENEIRPHEIILVADSLTGQDAVNIAQ 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      + +I+T++DG  +GG  + +      P+ FL  GE I+ LE F     +  I
Sbjct: 235 EFQKTVNLSSIILTRIDGDGKGGAALSMKAVTGCPIKFLATGEKIDQLETFHPDRIANRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|160915312|ref|ZP_02077525.1| hypothetical protein EUBDOL_01321 [Eubacterium dolichum DSM 3991]
 gi|158433111|gb|EDP11400.1| hypothetical protein EUBDOL_01321 [Eubacterium dolichum DSM 3991]
          Length = 323

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 167/308 (54%), Gaps = 2/308 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIG 59
            S  K + +  S   +   G   +     E I  + +  R +D+   EEL   L+ +D+G
Sbjct: 4   FSKLKKSFQQKSDSDRYLSGLDKSKRSFSERIRRLSLGFRGIDEEFLEELMVALLEADLG 63

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           +  AQK+V+E+  +   + +S    + + + E++  M +               VI +VG
Sbjct: 64  IKTAQKVVDEVENRALDRKLSSFDEISECLVEVLRDMYVSYEDEAMHINEQGVTVIYMVG 123

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT   KL+K   D G KV+LAA DTFR+ A+DQL  WADR   D +      D 
Sbjct: 124 VNGSGKTTTTAKLTKSFLDEGKKVVLAAADTFRAGAVDQLATWADRLGVDCIKGRENGDP 183

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           +A+  +A + A+    D LI DTAGRL N + LM  + KM RV++R    APH V  VLD
Sbjct: 184 SAVIVDAARFAKEHHADYLICDTAGRLQNKTNLMNELSKMRRVVEREIEGAPHEVWLVLD 243

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN + Q ++F      TG+I+TK+DGTA+GG +I I     +PV ++G+GE + DL
Sbjct: 244 ATTGQNGISQAKIFTETTNVTGIILTKLDGTAKGGIVIAIRDLLGLPVKYIGLGETLEDL 303

Query: 299 EPFVAKDF 306
            PF    +
Sbjct: 304 RPFDIDSY 311


>gi|289168048|ref|YP_003446317.1| cell division protein FtsY [Streptococcus mitis B6]
 gi|288907615|emb|CBJ22452.1| cell division protein FtsY [Streptococcus mitis B6]
          Length = 429

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 175/312 (56%), Gaps = 7/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           +      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA
Sbjct: 116 ETPQAEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVA 175

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVVGV 119
             + EEL  +   ++     VL  V  +I K++    K  N+D    F     V+L VGV
Sbjct: 176 SNLTEELRYEAKLENAKKTDVLRRV--IIEKLVELYEKGGNYDERIHFQDGLTVMLFVGV 233

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D A
Sbjct: 234 NGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPA 293

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA
Sbjct: 294 SVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDA 353

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+ 
Sbjct: 354 STGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIG 413

Query: 300 PFVAKDFSAVIT 311
            F +++F   + 
Sbjct: 414 EFNSENFMKGLL 425


>gi|154290868|ref|XP_001546023.1| hypothetical protein BC1G_15366 [Botryotinia fuckeliana B05.10]
 gi|150847185|gb|EDN22378.1| hypothetical protein BC1G_15366 [Botryotinia fuckeliana B05.10]
          Length = 311

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 143/305 (46%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   +TD+  S  LD    DG+ +E+   L+ +D+ V +   + + +      
Sbjct: 3   LQDLGRRINAAVTDLTRSSNLDEKAFDGMIKEICSALLEADVNVKLVGNLRKSIKASVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K+++       V +      + K++ P ++PF      + ++I+ VG+ G GKTT   KL
Sbjct: 63  KELAPAVNKKKVIQKAVYDELVKLVDPHAEPFKPK-KGKANIIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + 
Sbjct: 122 ARWYQSRGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAKEGVDKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K +++I+DT+GR      L   +  +   +K      P   + V+DA+ GQ A  Q + 
Sbjct: 182 EKFEIIIVDTSGRHRQEDALFQEMVDIQTAVK------PDQTVMVMDASIGQQAEAQSKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK DG A GGG I  V     P+ F+G GE + DLE F    F + + 
Sbjct: 236 FKETADFGAIIITKTDGHASGGGAISAVAATHTPIIFIGTGEHMLDLEKFAPTQFVSKLL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDM 300


>gi|1217621|emb|CAA65233.1| signal recognition particle receptor [Acidianus ambivalens]
          Length = 374

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 95/272 (34%), Positives = 151/272 (55%), Gaps = 15/272 (5%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS---------ELIHKMLMPL 99
           L   L+ SD+ + V  KI+E+L +    K V+    L ++          E++ K     
Sbjct: 108 LRTELLESDVSLEVTDKILEDLKSSLIGKKVNRSEDLDELVKKSLKNSIMEILEKNRFER 167

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           +       S +P+VI+  GVNGVGKTT I K++  +  AGLKV+++A DTFR+AA +QL 
Sbjct: 168 NLIEEIKRSPKPYVIMFFGVNGVGKTTTIAKVAYMLKKAGLKVIVSASDTFRAAAQEQLA 227

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I   +     V  + G D A++A++A + A+++ +DV++IDTAGR+H +  L   + +++
Sbjct: 228 IHCQKLEIPLVKGKYGGDPASVAFDAIQAAKSRGIDVVLIDTAGRMHVDKDLTEELKRIV 287

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           R+ K      P+  L V+DA  G +AL Q + F  V    G+I+TK+D  A+GG ++ + 
Sbjct: 288 RISK------PNLKLLVIDALAGNDALEQAKYFENVVDYDGVILTKVDADAKGGVVLSLA 341

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              K PV FLG G+  +DL PF    F   I 
Sbjct: 342 YELKKPVIFLGTGQNYDDLIPFSVDWFIERIF 373


>gi|13541363|ref|NP_111051.1| Signal recognition particle GTPase [Thermoplasma volcanium GSS1]
 gi|14324747|dbj|BAB59674.1| signal recognition particle protein dpa [Thermoplasma volcanium
           GSS1]
          Length = 287

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 98/287 (34%), Positives = 162/287 (56%), Gaps = 9/287 (3%)

Query: 26  LKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
            K K+ + +I S +++D D   EE+   LI +D+ V  A+ +   +  K   +D S +  
Sbjct: 3   EKFKKKLVEIFSRKKIDPDEAAEEIPLKLIEADVSVETAEYLGNLVRNKLKDRDFSGE-- 60

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           L DV     K ++ + KP   + + +P VI+ +G+NG GKTT IGK++K +   G  V+L
Sbjct: 61  LNDVLYASIKEILAIPKPDILNVNKKPFVIMFLGINGTGKTTTIGKVAKYLKSKGKSVVL 120

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           +A DTFR+ AI+QL +       + +  E GSD +++A++A + A+A+ +D +++DTAGR
Sbjct: 121 SASDTFRAGAIEQLSMIGKEIGVEVIKHEKGSDPSSVAFDAIQHAKARNIDYVLVDTAGR 180

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           ++ N  LM  + K+ RV        P   L VLDA  GQ+++ Q   FH   G   +I+T
Sbjct: 181 MNTNKNLMDEMKKIKRVSN------PDITLLVLDAVAGQDSINQARTFHENVGFDAVIVT 234

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K+D  ARGG ++ I    + PV F  VG+G++D+  F A  +   + 
Sbjct: 235 KLDTDARGGSILSIYHDLRKPVLFACVGQGLDDIMQFDADWYIEKLM 281


>gi|309806859|ref|ZP_07700846.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 03V1-b]
 gi|309809451|ref|ZP_07703309.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners SPIN 2503V10-D]
 gi|312874530|ref|ZP_07734555.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 2053A-b]
 gi|329921144|ref|ZP_08277666.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners SPIN 1401G]
 gi|308166725|gb|EFO68917.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 03V1-b]
 gi|308170123|gb|EFO72158.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners SPIN 2503V10-D]
 gi|311089921|gb|EFQ48340.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 2053A-b]
 gi|328934782|gb|EGG31273.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners SPIN 1401G]
          Length = 337

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 172/314 (54%), Gaps = 11/314 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
            + ++  +         +G   TS  L E +   ++  R +D+   ++LEDLLI +D+G 
Sbjct: 19  KDSEITKKDNDIQATYDRGLKKTSNSLGEKLNSFLAQFRTIDEDFFDDLEDLLIEADVGY 78

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHV 113
             A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S         P V
Sbjct: 79  ETAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILKTGDMPAV 135

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R     +   
Sbjct: 136 FLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVDVQVISGN 195

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  P  P  +
Sbjct: 196 TNADPSSVVYEGLECAVNNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKIPDQPQEI 255

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+D +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE
Sbjct: 256 LLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPVKLVGLGE 315

Query: 294 GINDLEPFVAKDFS 307
              DL  F A+ F+
Sbjct: 316 KAEDLAEFDAEKFA 329


>gi|15604048|ref|NP_220563.1| signal recognition particle protein [Rickettsia prowazekii str.
           Madrid E]
 gi|6226156|sp|Q9ZDZ0|SRP54_RICPR RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|3860739|emb|CAA14640.1| SIGNAL RECOGNITION PARTICLE PROTEIN (ffh) [Rickettsia prowazekii]
 gi|292571768|gb|ADE29683.1| Signal recognition particle protein [Rickettsia prowazekii Rp22]
          Length = 449

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 156/309 (50%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             + LT+       KL    + I++  ++D  +R+ +   L+ SD+ + V +  +EE+  
Sbjct: 1   MFKTLTQNLTKIFDKLVN--SGILTENQIDTAMRD-VRVALLESDVALPVIKGFIEEVKQ 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           K   ++V       Q ++  + E +  +L         + + +P V +L+VG+ G GKTT
Sbjct: 58  KALGQEVIKSVSPGQMIIKIIHEEMINLLASTESTTKLNLNAKPPVNLLIVGLQGGGKTT 117

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL+ ++ +   KV+L + DT+R AA +QL I A+  + D +    G     +   A 
Sbjct: 118 ASGKLALRLKNQNKKVLLVSLDTYRPAAQEQLAIIANSVNIDSLPIVKGEKPLDIVKRAI 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +AQ    DV+I DTAGR+  ++++M     + ++L       P   L V+D+ TGQ+A+
Sbjct: 178 GEAQISAYDVVIYDTAGRIQIDNVMMEEALAIKKILN------PTETLLVIDSMTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F      +GLI++++DG  +GG  + +    + P+ FL  GE + DLE F A+  
Sbjct: 232 ITAKTFSEKLEISGLILSRIDGDTKGGAALSVKYFTQKPIKFLSSGEKLTDLEEFNAERL 291

Query: 307 SAVITGCLD 315
           ++ I    D
Sbjct: 292 ASRILDMGD 300


>gi|47459362|ref|YP_016224.1| signal recognition particle GTPase [Mycoplasma mobile 163K]
 gi|47458692|gb|AAT28013.1| signal recognition particle GTPase [Mycoplasma mobile 163K]
          Length = 447

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 150/306 (49%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S ++++ +  + +   L ++ + E   E++  L+ +D+ + V ++ ++ +  +   
Sbjct: 2   FNNLSKRMQKSLEKMSAKTILKEEDILEITREIKLALLEADVNLIVVKEFIQNIKDQTIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++       Q+V+  V E + K+    +K  N   S +P + ++ G+ G GKTT I K+
Sbjct: 62  TELIGKLNPGQQVIKIVKEELVKIFGNKTKEIN--ISKKPTIFMIAGLQGGGKTTTIAKI 119

Query: 132 SKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +    +     K+++ AGD +R AAIDQL   +     D   + +         EA  +A
Sbjct: 120 AHFYKNKKKIEKILIVAGDIYRPAAIDQLDTLSKMVGVDIYKNSVDIKPQQTVKEAIDKA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D+++IDTAGRL  +  LM  + ++  + K      P  ++ V DA +GQ+     
Sbjct: 180 KNEYYDLVLIDTAGRLSIDEKLMNELIEIKEIAK------PQEIIFVSDALSGQDIFNVA 233

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F      TG I+TK+D  ARGG  + I     IP+ F+G GE + +L+ F     +  
Sbjct: 234 KTFDEKLKLTGSIITKLDSDARGGAALSITKMLNIPILFIGTGEKVTNLDLFHPDRMADR 293

Query: 310 ITGCLD 315
           I G  D
Sbjct: 294 ILGMGD 299


>gi|323351219|ref|ZP_08086875.1| cell division protein FtsY [Streptococcus sanguinis VMC66]
 gi|322122443|gb|EFX94154.1| cell division protein FtsY [Streptococcus sanguinis VMC66]
          Length = 506

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 172/307 (56%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  +
Sbjct: 196 PQEESTQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVASSL 255

Query: 67  VEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            EEL  +   ++      L    + +L+             +F +   V+L VGVNGVGK
Sbjct: 256 TEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVNGVGK 315

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++ Y+
Sbjct: 316 TTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASVVYD 375

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQN
Sbjct: 376 GMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDASTGQN 435

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F ++
Sbjct: 436 ALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSE 495

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 496 NFMKGLL 502


>gi|315185661|gb|EFU19429.1| signal recognition particle subunit FFH/SRP54 (srp54) [Spirochaeta
           thermophila DSM 6578]
          Length = 443

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 142/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISS-----RRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELL 71
           F   S   ++ +  I        + +++ V E+++  L+ +D+ V V +    + ++E  
Sbjct: 2   FDRISATFQDIVRSITGKATISPKNIEEAV-EQIKYALLEADVHVRVVRRFVNQTIQEAT 60

Query: 72  TKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +R  K V+  Q+ +  + + +   L    +           +IL+ G+ G GKTT   K
Sbjct: 61  GERVLKSVTPGQQFVKILYDKLVSFLGDERQDLTLKGPDTLSIILLAGLQGSGKTTTAAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G + +L A D  R AAIDQL+                 D  A+   A   A+
Sbjct: 121 LALHLKKKGRRPLLVAADLARPAAIDQLETLGASIDVPVYTDRSQKDPRAVVKRALSHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VD LI+DTAGR   +  LM  + +++R L       P   L V DA TGQ A+   +
Sbjct: 181 RQAVDTLIVDTAGRHQVDRELMDELSRLVRDLS------PDEALLVADAMTGQTAVDVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+++TK D   RGG  + I      P+ F+GVGE ++DLEPF     ++ I
Sbjct: 235 AFNEAVGITGVVLTKFDSDTRGGAALSIRTITGAPIKFIGVGEKVDDLEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|120403169|ref|YP_952998.1| signal recognition particle-docking protein FtsY [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955987|gb|ABM12992.1| signal recognition particle-docking protein FtsY [Mycobacterium
           vanbaalenii PYR-1]
          Length = 449

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 174/312 (55%), Gaps = 6/312 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +++A  +   + +L    + +   L   +  ++    LD+   EE+ED L+ +D+G  V 
Sbjct: 141 EEIA-PTEGRLDRLRGRLSKSQSTLGRSMLGLLGGGDLDEDSWEEIEDTLLIADLGPVVT 199

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFN-WDFSHRPHVILVVGVN 120
           + +V  L  K  A  V  +     V    LI ++   L +       + +P V+LVVGVN
Sbjct: 200 ESVVTSLRAKMAASQVRTEADARAVLREVLIAELRPDLDRSIKALPHADKPSVLLVVGVN 259

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A  V    G+D A+
Sbjct: 260 GTGKTTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQSWASRVGAQVVRGPEGADPAS 319

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++A     A   DV++IDTAGRLH  + LM  +GK+ RV+ +    A   VL VLDAT
Sbjct: 320 VAFDAVDTGIAAGADVVVIDTAGRLHTKTGLMDELGKVKRVVGKR--AAVDEVLLVLDAT 377

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQN+L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL P
Sbjct: 378 IGQNSLPQARVFAEVVDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAP 437

Query: 301 FVAKDFSAVITG 312
           F    F   + G
Sbjct: 438 FEPAAFVDALLG 449


>gi|242091039|ref|XP_002441352.1| hypothetical protein SORBIDRAFT_09g025050 [Sorghum bicolor]
 gi|241946637|gb|EES19782.1| hypothetical protein SORBIDRAFT_09g025050 [Sorghum bicolor]
          Length = 482

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 139/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A     +   ++ + ++  +D+ V      E+   L+++D+     + +   +      
Sbjct: 3   LAELGGSIARALSRMSNATVVDEKVLADCLNEICRALLQADVRFETVRDVKANIKRVVNL 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A   + +R++   V + I +ML P  KP       +P++++ VG+ G GKTT   K 
Sbjct: 63  DALAAGTNKRRIIQQAVVDEIRRMLDP-GKPSFTPSKGKPNLVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G    L   DTFR+ A DQLK  A +    F  S   SD   +A E     + 
Sbjct: 122 ADYHRRKGFNPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDMFRK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR    + L   + ++    K      P  V+ V+D + GQ A  Q + 
Sbjct: 182 EKCDLIIVDTSGRHKQEAALFEEMRQVSEATK------PDLVIFVMDGSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TKMDG A+GGG +  V   K PV F+G GE I D E F    F + + 
Sbjct: 236 FKQSASVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHILDFEVFEVNPFVSRLL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDL 300


>gi|152991247|ref|YP_001356969.1| signal recognition particle protein [Nitratiruptor sp. SB155-2]
 gi|151423108|dbj|BAF70612.1| signal recognition particle protein [Nitratiruptor sp. SB155-2]
          Length = 452

 Score =  248 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 93/300 (31%), Positives = 149/300 (49%), Gaps = 13/300 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S      I  I      D+   +    EL+  L++SD+   V +++++++     A
Sbjct: 2   FETLSNSFTSAIKKIRFKD--DEKALKKALTELKKSLLKSDVHHKVVKELLQKVELDTKA 59

Query: 77  KDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             +     L  + + + ++L  P +K      S  P V+L+ G+ G GKTT  GKL+  +
Sbjct: 60  AGIGRDTFLQALQKNLTEILTAPGAKQGFVYASKPPTVVLMTGLQGSGKTTTSGKLANYL 119

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV+L A D  R AA++QL+  A +   DF   +   D   +  +A K A+ K  D
Sbjct: 120 KLRGKKVLLVAADLQRLAAVEQLRQIASQIEVDFFGEDDQKDPVKVVNDALKLAREKLYD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+IIDTAGRL  +  LM  + K+           P  V  V D+ TGQ+A+R    F+  
Sbjct: 180 VVIIDTAGRLAIDEALMEELKKVKEA------AHPDEVFYVADSLTGQDAVRSAAKFNED 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G TG+I+TK DG A+GG  + +     +P+ F+G GE + DLE F+ +  +  + G  D
Sbjct: 234 VGITGVILTKYDGDAKGGVALSLAHQIGVPLRFIGTGEKMPDLEVFIPERITNRLMGAGD 293


>gi|311029998|ref|ZP_07708088.1| signal recognition particle-docking protein FtsY [Bacillus sp.
           m3-13]
          Length = 332

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 125/322 (38%), Positives = 192/322 (59%), Gaps = 6/322 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+ +++ S   K  +G   T       + D+++  R++D+   EELE++LI +D+GV 
Sbjct: 8   KEKLTTQTDSVTEKFREGLTKTRDSFSGKVNDLVARYRKVDEDFFEELEEILIGADVGVN 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVV 117
              ++++EL  +   +++   R +  V       I++    +S   N+       V++V 
Sbjct: 68  TVMELIDELRMEVKRRNIQDPREVQSVISEKLVEIYQAGEDVSPTINFQQDGLTVVLVVG 127

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
               VGKTT IGK++KK+   G  V+LAAGDTFR+ AIDQL++W +R   D +    GSD
Sbjct: 128 VNG-VGKTTSIGKIAKKLKQEGKSVLLAAGDTFRAGAIDQLEVWGERVGVDVIKQSEGSD 186

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+ Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL VL
Sbjct: 187 PAAVMYDALQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVL 246

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQNAL Q ++F      TG+++TK+DGTA+GG ++ I    KIPV F+G+GE   D
Sbjct: 247 DATTGQNALSQAKIFSEATNVTGIVLTKLDGTAKGGIVLAIRNEMKIPVKFVGLGEKAED 306

Query: 298 LEPFVAKDFSAVITGCLDYGEE 319
           L+ F A+ +   +   +   EE
Sbjct: 307 LQEFNAEQYVYGLFADMMEKEE 328


>gi|327401116|ref|YP_004341955.1| Signal recognition 54 kDa protein [Archaeoglobus veneficus SNP6]
 gi|327316624|gb|AEA47240.1| Signal recognition 54 kDa protein [Archaeoglobus veneficus SNP6]
          Length = 436

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 88/296 (29%), Positives = 144/296 (48%), Gaps = 16/296 (5%)

Query: 26  LKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
             LK+ +  I  S  +D  + EE    ++  L+++D+ V   ++I + +  +  ++DV  
Sbjct: 4   ESLKDIVKKIARSTTVDKALVEEVVRDIQRALLKADVNVRQVKEISDAIKKRALSEDVLP 63

Query: 82  QRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
              +    +  +  +++  + +        +   I++VG+ G GKTT   KL+K   D G
Sbjct: 64  TFNVREHIIRIVYEELMRGIGEGLEIPL--KKAKIMLVGLQGSGKTTTAAKLAKYFKDKG 121

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
           +K  + A DT+R AA +QLK  A+     F   +   DA  +A    K  +    D++II
Sbjct: 122 MKTGVIAADTWRPAAYEQLKQLAESYGIGFYGEKENKDAVEIARNGLKALKD--YDMIII 179

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGR      L+  + ++ +  +      P   L VLDA  GQ A RQ + FH   G  
Sbjct: 180 DTAGRHALEEELIDEMIEIAKATQ------PDYKLLVLDAAIGQLASRQAKAFHDAIGIN 233

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G+I+TK DGTA+GGG +       IP+ F+G GE + D E F    F + + G  D
Sbjct: 234 GIIITKFDGTAKGGGALSAAREIGIPIAFIGTGEKVEDFERFDPAGFVSRLLGMGD 289


>gi|15672795|ref|NP_266969.1| hypothetical protein L0206 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723735|gb|AAK04911.1|AE006314_9 cell division protein FtsY [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406364|gb|ADZ63435.1| signal recognition particle docking protein FtsY [Lactococcus
           lactis subsp. lactis CV56]
          Length = 459

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 122/300 (40%), Positives = 178/300 (59%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +K  +    T     +G  ++ ++ R +D+   EELE+ LI SD+GV +A ++ EEL  +
Sbjct: 156 KKYEQSLTLTRKTFSDGFNELFANFRTVDEEFFEELEETLIMSDVGVDLAMEVTEELRKE 215

Query: 74  RYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKL 131
               +      L  +  E I         P   D  S    V L VGVNGVGKTT IGKL
Sbjct: 216 AKLVNAKSTDDLRQLIIEKIVDKFDGEKLPTKLDIQSDGLSVFLFVGVNGVGKTTTIGKL 275

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +  + G KV+LAA DTFR+ AIDQL  W +R+  + V    GSD AA+ ++A  +A+A
Sbjct: 276 AARYKNEGKKVLLAAADTFRAGAIDQLVEWGNRSGVEVVTKPAGSDPAAVVFDALAKAKA 335

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+L++DTAGRL N   LM  + K+ +V+KR  P APH  +  LDATTGQNA++Q + 
Sbjct: 336 ENYDILLVDTAGRLQNKDNLMKELEKIGKVIKREIPDAPHETILALDATTGQNAIQQAKE 395

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F AV   TG+ +TK+DG+A+GG ++ IV + KIPV  +G+GE +NDL+ F  + F   + 
Sbjct: 396 FSAVTPITGIALTKLDGSAKGGIVLSIVQSLKIPVKLIGLGEKLNDLQDFDEEFFVRGLF 455


>gi|33520063|ref|NP_878895.1| cell division protein FtsY [Candidatus Blochmannia floridanus]
 gi|33504409|emb|CAD83302.1| cell division protein FtsY [Candidatus Blochmannia floridanus]
          Length = 308

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 106/306 (34%), Positives = 177/306 (57%), Gaps = 7/306 (2%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             +   KL     +T  K+ + I DI  +R +D      +++ LI+SD+ +   QKI+  
Sbjct: 4   KFTLFNKLKTSLLNTRKKIGDSIFDIFHNRIVDHDTINIIKNQLIKSDVNIQTTQKIINN 63

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTT 126
                +   +++      + E+IH  ++ + KP        + +P VILV+GVNGVGKTT
Sbjct: 64  FKKNTF---LNMNLNSKSIYEIIHHSMLQIMKPVEKPLFITNQQPFVILVIGVNGVGKTT 120

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-ADFVCSEIGSDAAALAYEA 185
            +GKL+         VM+AAGDT R+AAIDQL  +         + +   SD+A++ + A
Sbjct: 121 TVGKLAYHYRSQNKSVMIAAGDTKRAAAIDQLITFTKNIDSISIIANYSTSDSASIIFNA 180

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++A ++ +++LIIDTAGRL NN   +  + K+ + +K++ P+APH  + VLD+  GQN+
Sbjct: 181 MQKALSQNINILIIDTAGRLQNNIHNIQELQKIQQTIKKIQPNAPHETILVLDSNIGQNS 240

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q++ FH+    TG+IMTK+DG+++GG L+ I     IP+ +LG+G+ + DL+ F A +
Sbjct: 241 INQLKTFHSTITITGIIMTKLDGSSKGGVLLSISNCFSIPIRYLGIGQNLEDLQIFNATE 300

Query: 306 FSAVIT 311
           F   I 
Sbjct: 301 FIEAIL 306


>gi|297852530|ref|XP_002894146.1| signal recognition particle 54 kDa protein 3 [Arabidopsis lyrata
           subsp. lyrata]
 gi|297852532|ref|XP_002894147.1| signal recognition particle 54 kDa protein 3 [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339988|gb|EFH70405.1| signal recognition particle 54 kDa protein 3 [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339989|gb|EFH70406.1| signal recognition particle 54 kDa protein 3 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 496

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 138/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    ++   I  + +   +D+        E+   L++SD+   + +++   +      
Sbjct: 3   LAELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +D++       + E      + KML P  KP       +  V++ VG+ G GKTT   K 
Sbjct: 63  EDLAAGHNKRRIIEQAIFSELCKMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S   SD   +A E     + 
Sbjct: 122 AYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEATLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F  K F + + 
Sbjct: 236 FKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|269114992|ref|YP_003302755.1| signal recognition particle protein [Mycoplasma hominis]
 gi|268322617|emb|CAX37352.1| Signal recognition particle protein (fifty fourhomolog) [Mycoplasma
           hominis ATCC 23114]
          Length = 442

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 86/301 (28%), Positives = 143/301 (47%), Gaps = 20/301 (6%)

Query: 26  LKLKEGITDIISSRRL-DDGVREELEDL---LIRSDIGVAVAQKIVEELLTKR-----YA 76
            +++  I  I     + ++ + E L ++   L+ +D+ + V +   +E+  K        
Sbjct: 7   KRMQNSIQKINKKMSINEEDILEILREIKISLLEADVNLEVVKNFTKEVKAKALSSQIIG 66

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           K    Q VL    + + ++L   SK  +   ++ P  I++VG+ G GKTT   KLS    
Sbjct: 67  KLNQQQTVLKIFKDELTRILG--SKSIDIKTNNNPTKIMMVGLQGSGKTTTAAKLSVYFK 124

Query: 137 DAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
              L    +L   D +R AA +QL+  A +T  DF   E   +A  +A +A + A+  K 
Sbjct: 125 KKNLAVNPLLVGDDIYRPAAREQLQQLAKQTQTDFFTMEEN-NAINIAQKAIELAKENKN 183

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++IIDTAGRL  +  LM  +  + +         P  +  V+DA +GQ+ +   ++FH 
Sbjct: 184 DLVIIDTAGRLAIDENLMQELKDIKKY------THPDYIFLVVDAMSGQDVINTAKIFHQ 237

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
                G I+TK+D  ARGG  + I     +P+ F+G GE +  LE F     +  I G  
Sbjct: 238 ELNLDGTIITKLDSDARGGAALSITHLLNVPIIFIGTGEKLTGLELFHPDRMADRILGMG 297

Query: 315 D 315
           D
Sbjct: 298 D 298


>gi|148284448|ref|YP_001248538.1| signal recognition particle protein [Orientia tsutsugamushi str.
           Boryong]
 gi|146739887|emb|CAM79851.1| signal recognition particle protein [Orientia tsutsugamushi str.
           Boryong]
          Length = 450

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 144/306 (47%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + KL      I  S  L +     +  E+   L+ +D+ + V +  +  ++ K   
Sbjct: 2   FQTLTQKLSNIFDKIKGSTALSEQQVLTIAREVRIALLEADVSLVVIKDFINNVVEKAKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGK 130
           ++V       Q V+  +S+ + K+L              P V I+++G+ G GKTT   K
Sbjct: 62  QEVIRSVTPGQMVIKIISDEMIKVLSSSETEQALRIEFEPPVNIMMIGLQGSGKTTTTAK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-ADFVCSEIGSDAAALAYEAFKQA 189
           L+ K++    KVM+ + D +R AA +QL+           +      +   +   + K+A
Sbjct: 122 LAMKLAKKNKKVMVVSLDIYRPAAREQLETLVRNHETILSLPIVSNENVFQIIARSTKEA 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    DV+I DTAGRLH +  ++  +  +  ++       P  +L V+D+  GQ ++   
Sbjct: 182 KLLGCDVVIYDTAGRLHIDETMLQELSNIKEIIT------PKEILLVVDSLIGQESVNVA 235

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     +G+++TK+DG +RGG  + I      P+ FLG+GE  NDLE F  +  ++ 
Sbjct: 236 NQFNQTLNISGVVLTKIDGDSRGGAALSIKYVTGKPIKFLGIGEKTNDLEEFHPERIASR 295

Query: 310 ITGCLD 315
           I G  D
Sbjct: 296 ILGKGD 301


>gi|315427553|dbj|BAJ49153.1| signal recognition particle subunit SRP54 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 466

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 144/305 (47%), Gaps = 14/305 (4%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKR 74
             F+S    LKE     ++S   D    EEL    +  L+ +D+ V + QKI E +  + 
Sbjct: 25  SSFSSMGRSLKEVFRKFLASPSADKSSVEELVRGIQRSLLMADVRVELVQKISERIRARA 84

Query: 75  YAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS---HRPHVILVVGVNGVGKTTVIGK 130
           + + +       D V++++++ L+ L       FS    +P+V++++G+ G GKTT   K
Sbjct: 85  FEEKLPPGVSRKDSVAKIVYEELINLLGGKPAQFSTGGKKPYVVMLLGIQGTGKTTTAAK 144

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G KV +   DT+R AA  QLK   +            ++   +A +  +  +
Sbjct: 145 LANYLKVGGYKVGVVCADTYRPAAYQQLKHLLEPRQIPVYGEPENNNPVEIARKGLEHFK 204

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
              VDV+IIDTAGR      LM  +  + + LK      P   + V+D T GQ A     
Sbjct: 205 QMGVDVVIIDTAGRHRQQESLMDEMKMLEKELK------PDENILVIDGTIGQQAGAHAA 258

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH       +I+TK+D + RGGG +  V     P+ F+GVGE + D +PF    + A +
Sbjct: 259 AFHKATPVGSIIITKLDTSGRGGGALAAVAETGAPIKFVGVGESVEDFQPFNPSSYIASL 318

Query: 311 TGCLD 315
            G  D
Sbjct: 319 LGMPD 323


>gi|238809775|dbj|BAH69565.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 459

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/303 (25%), Positives = 144/303 (47%), Gaps = 19/303 (6%)

Query: 24  TSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
              ++++ I  +     + ++ + E   +++  L+ +D+ + + ++ +  +  K     +
Sbjct: 11  LENRIQKSIQKMARKTVVNEEDILEVTRDIKMALLEADVNLKIVKEFIVNVKQKALESKL 70

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                + Q+++  V   +  +L    K      + RP++I++ G+ G GKTT   KL+  
Sbjct: 71  VGSLNASQQMIKIVHNELVDILGG--KVQEVKITARPYIIMMAGLQGSGKTTACAKLAYY 128

Query: 135 MSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +       K ++ A D +R AA+ QL   A     D+        A  +  EA K A A+
Sbjct: 129 LRKKNFVTKPLVVAADIYRPAAVQQLVTLAKSIQIDYFEKGTNVSAQDIVKEALKVADAQ 188

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D++IIDTAGRL  +  LM  +  + ++        P  +  V DA +GQ+ L   E F
Sbjct: 189 KNDLIIIDTAGRLSIDEPLMQELWDLKKIAN------PSEIFFVADALSGQDILNVAETF 242

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     TG I+TK+D  ARGG  + +    K+P+ F+G GE +++L+ F     +  I G
Sbjct: 243 NNKLKLTGTIITKLDSDARGGAALSLTKMLKLPIRFIGTGEKVSNLDLFYPDRMADRILG 302

Query: 313 CLD 315
             D
Sbjct: 303 MGD 305


>gi|325957954|ref|YP_004289420.1| Signal recognition 54 kDa protein [Methanobacterium sp. AL-21]
 gi|325329386|gb|ADZ08448.1| Signal recognition 54 kDa protein [Methanobacterium sp. AL-21]
          Length = 447

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 143/304 (47%), Gaps = 19/304 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L + +  +     +D+ V +E    ++  LI+SD+ + +   + + +  +   
Sbjct: 6   LGNLGKNLTKTMKKLAGMAIIDEEVVKEVIKDIQRALIQSDVNIKLVLNLSKTIEDRSLN 65

Query: 77  KD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++        + V+  V E +  +L   ++    D   RP+ IL +G+ G GKTT IGKL
Sbjct: 66  EEPPKGVTPKEHVVRIVYEELVNLLGSSAQEVEID--KRPYKILFMGLQGSGKTTSIGKL 123

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G    + + DT+R AA +QL    +  +          DA  LA    K A+ 
Sbjct: 124 TKYLQKKGFNPAIVSTDTWRPAAYEQLLQLTEPMNVPVYGDHENKDALDLARTGLKAAK- 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            K DV+I+DTAGR    S L+A +  +  ++       P  V+ V+D T GQ A  Q   
Sbjct: 183 -KNDVIIVDTAGRHKEESDLLAEMESLSTIVD------PDEVIMVIDGTIGQQAGEQALA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+       +I+TK+DG+A+GGG +  V     P+ F+G GE + D E F    F + + 
Sbjct: 236 FNNATKIGSIIITKLDGSAKGGGALSAVAEIGAPIKFIGTGERVEDFEAFDPDRFISRLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|238852589|ref|ZP_04642999.1| signal recognition particle GTPase [Lactobacillus gasseri 202-4]
 gi|238834735|gb|EEQ26962.1| signal recognition particle GTPase [Lactobacillus gasseri 202-4]
          Length = 449

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 176/312 (56%), Gaps = 7/312 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S++KVA +      +  KG   T+      +    +  R +D+   ++LEDLLI SD+G 
Sbjct: 131 SDEKVAEKEDEQ-ERYDKGLEKTNHSFGARLNAFFAKFRTVDEDFFDDLEDLLIESDVGF 189

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVIL 115
             A+++ + L  +   ++      L  V      ++  K           D   +P+V L
Sbjct: 190 ETAEELTDSLRDEAKLQNAKSHDDLKQVIVEKLVDIYDKGGEGEDSKLADDPDSKPNVYL 249

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNG GKTT IGKL+K++ D+G  VM+ A DTFR+ A++QL  W  R   + V     
Sbjct: 250 FVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVEVVTGPEK 309

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++ Y+  K+A+ + +D L++DTAGRL N   LM+ + K+ R +K++ P  P+ VL 
Sbjct: 310 ADPASVVYDGVKKAKDRGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPDQPNEVLL 369

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE +
Sbjct: 370 VLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKLVGLGEKV 429

Query: 296 NDLEPFVAKDFS 307
           +DL  F A+ F+
Sbjct: 430 DDLANFDAEKFA 441


>gi|308189776|ref|YP_003922707.1| signal recognition particle protein [Mycoplasma fermentans JER]
 gi|319776994|ref|YP_004136645.1| signal recognition particle protein [Mycoplasma fermentans M64]
 gi|307624518|gb|ADN68823.1| signal recognition particle protein [Mycoplasma fermentans JER]
 gi|318038069|gb|ADV34268.1| Signal recognition particle protein [Mycoplasma fermentans M64]
          Length = 453

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/303 (25%), Positives = 144/303 (47%), Gaps = 19/303 (6%)

Query: 24  TSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
              ++++ I  +     + ++ + E   +++  L+ +D+ + + ++ +  +  K     +
Sbjct: 5   LENRIQKSIQKMARKTVVNEEDILEVTRDIKMALLEADVNLKIVKEFIVNVKQKALESKL 64

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                + Q+++  V   +  +L    K      + RP++I++ G+ G GKTT   KL+  
Sbjct: 65  VGSLNASQQMIKIVHNELVDILGG--KVQEVKITARPYIIMMAGLQGSGKTTACAKLAYY 122

Query: 135 MSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +       K ++ A D +R AA+ QL   A     D+        A  +  EA K A A+
Sbjct: 123 LRKKNFVTKPLVVAADIYRPAAVQQLVTLAKSIQIDYFEKGTNVSAQDIVKEALKVADAQ 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D++IIDTAGRL  +  LM  +  + ++        P  +  V DA +GQ+ L   E F
Sbjct: 183 KNDLIIIDTAGRLSIDEPLMQELWDLKKIAN------PSEIFFVADALSGQDILNVAETF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     TG I+TK+D  ARGG  + +    K+P+ F+G GE +++L+ F     +  I G
Sbjct: 237 NNKLKLTGTIITKLDSDARGGAALSLTKMLKLPIRFIGTGEKVSNLDLFYPDRMADRILG 296

Query: 313 CLD 315
             D
Sbjct: 297 MGD 299


>gi|325677818|ref|ZP_08157460.1| signal recognition particle-docking protein FtsY [Ruminococcus
           albus 8]
 gi|324110372|gb|EGC04546.1| signal recognition particle-docking protein FtsY [Ruminococcus
           albus 8]
          Length = 301

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 124/302 (41%), Positives = 188/302 (62%), Gaps = 3/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL  G   T   +   I  ++ +  ++D+ + EELE+ LI SDIGV  + KI ++
Sbjct: 1   MGFFEKLKNGLRKTKESMMGRIERLLHAFTKIDEDLFEELEETLILSDIGVNTSVKICDK 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +      K ++    + DV + +   ++   +P   D S  P VILV+GVNGVGKTT IG
Sbjct: 61  VRDYVKQKGITDPTAIKDVLKDVIAEMLGEEQPL--DLSTTPSVILVIGVNGVGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ ++ + G +V++AA DTFR+AAIDQL++W DR   + +  + GSD AA+ ++A   A
Sbjct: 119 KLANQLKNEGKRVIVAAADTFRAAAIDQLEVWTDRAGVELIKHKEGSDPAAVVFDALTAA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A++ DV+I DTAGRLHN   LM  + K+ R++ +        VL  LDATTGQNA+ Q 
Sbjct: 179 KARQADVVICDTAGRLHNKKNLMNELEKISRIVHQQAEGCALEVLLALDATTGQNAVNQA 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+  A  TG+I+TK+DGTA+GG +I I    KIPV  + VGE I+D++PF+A+DF   
Sbjct: 239 QQFNEAANITGIILTKLDGTAKGGIVITICDDLKIPVKLVTVGEKIDDIQPFIARDFVDA 298

Query: 310 IT 311
           + 
Sbjct: 299 LF 300


>gi|16127883|ref|NP_422447.1| signal recognition particle protein [Caulobacter crescentus CB15]
 gi|221236704|ref|YP_002519141.1| signal recognition particle GTPase, SRP [Caulobacter crescentus
           NA1000]
 gi|13425409|gb|AAK25615.1| signal recognition particle protein [Caulobacter crescentus CB15]
 gi|220965877|gb|ACL97233.1| signal recognition particle GTPase, SRP [Caulobacter crescentus
           NA1000]
          Length = 508

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 149/309 (48%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT+  +    +L      ++S + +D+ +RE +   L+ +D+ + V +  + +   
Sbjct: 1   MFDGLTERLSGVFERLGG--RGVLSEKDIDEALRE-VRVALLEADVALPVVKDFISKAKD 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
               + V        +V+  V + +  ML            + P VIL+ G+ G GKTT 
Sbjct: 58  LAGGEAVIRSVKPADQVVKIVYDGLVDMLGGEEPTGLNLALNPPSVILMAGLQGSGKTTT 117

Query: 128 IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GKL+ ++      KV++A+ DT R AA++QL   A +   D +    G  A  +A  A 
Sbjct: 118 TGKLALRLSKSDRKKVLVASLDTRRPAAMEQLATLARQVEVDSLPIVAGQSAPDIAKRAL 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+    DVLI+DTAGR   +  +M+   ++ R+       +P   + V D+ TGQ+A+
Sbjct: 178 SAAKLGGYDVLILDTAGRTTLDESMMSEAAEIARI------ASPSETILVADSLTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           R  + FH     TGLI+T+ DG  RGG  + +     +P+ FLG GE I+ L+ F A+  
Sbjct: 232 RTAKAFHERLPLTGLILTRADGDGRGGAALSMRHVTGLPIKFLGAGEKIDQLDVFDARRV 291

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 292 AGRILGQGD 300


>gi|312872428|ref|ZP_07732497.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 2062A-h1]
 gi|325913459|ref|ZP_08175825.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners UPII 60-B]
 gi|311092010|gb|EFQ50385.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 2062A-h1]
 gi|325477228|gb|EGC80374.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners UPII 60-B]
          Length = 337

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 172/314 (54%), Gaps = 11/314 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
            + ++  +         +G   TS  L E +   ++  R +D+   ++LEDLLI +D+G 
Sbjct: 19  KDSEITKKDNDIQATYDRGLKKTSNSLGEKLNSFLAQFRTIDEDFFDDLEDLLIEADVGY 78

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHV 113
             A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S         P V
Sbjct: 79  ETAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILKTGDMPAV 135

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R     +   
Sbjct: 136 FLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVDVQVISGN 195

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  P  P  +
Sbjct: 196 TNADPSSVVYEGLECAVKNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKIPDQPQEI 255

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+D +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE
Sbjct: 256 LLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPVKLVGLGE 315

Query: 294 GINDLEPFVAKDFS 307
              DL  F A+ F+
Sbjct: 316 KAEDLAEFDAEKFA 329


>gi|284162145|ref|YP_003400768.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Archaeoglobus profundus DSM 5631]
 gi|284012142|gb|ADB58095.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Archaeoglobus profundus DSM 5631]
          Length = 435

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 144/299 (48%), Gaps = 22/299 (7%)

Query: 26  LKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYAKDV-- 79
             LKE +  I  S  +D  + EE+    +  LI++D+ V   ++I + +  +  +++V  
Sbjct: 4   EALKEAVRKITRSATVDKALVEEIVKDIQRALIKADVNVRHVKEISDAIKKRALSEEVLE 63

Query: 80  ---SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
                + ++  V E + K +         +   +   I++VG+ G GKTT   KL+K   
Sbjct: 64  GLNPREHIIKIVYEELLKGIGEG-----LEIPLKKSKIMLVGLQGSGKTTTTAKLAKYFK 118

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           D GL+  +   DT+R AA DQLK  A+     F       DA  +   A K+ +    D+
Sbjct: 119 DKGLRTAVVCADTWRPAAYDQLKQLAENYGIAFYGERESKDAVKIVENALKKLKD--YDM 176

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +IIDTAGR      L+  + ++ +V        P   L VLDA  GQ A +Q + FH   
Sbjct: 177 IIIDTAGRHALEKELIDEMIEIAKVAN------PDYKLLVLDAAIGQLASKQAKAFHEAI 230

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  G+I+TK DGTA+GGG +       IP+ F+G GE + D E F    F + + G  D
Sbjct: 231 GIDGIIITKFDGTAKGGGALSAAREIGIPIAFIGTGEKVEDFERFDPAGFVSRLLGMGD 289


>gi|224139052|ref|XP_002322968.1| predicted protein [Populus trichocarpa]
 gi|222867598|gb|EEF04729.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 138/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   I  + ++  +D+        E+   L++SD+   + + +   +      
Sbjct: 3   LAELGGSISRAIQQMSNATIIDEKALNDCLNEITRALLQSDVQFKLVRDMQTNIKKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            D++       + +      + KML P  KP       +  V++ VG+ G GKTT   K 
Sbjct: 63  DDLAAGHNKRKIIQQAIFNELCKMLDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + 
Sbjct: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR      L   + ++    K      P  V+ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEVALFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F  K F + + 
Sbjct: 236 FKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|227202754|dbj|BAH56850.1| AT1G48900 [Arabidopsis thaliana]
          Length = 450

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 138/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    ++   I  + +   +D+        E+   L++SD+   + +++   +      
Sbjct: 3   LAELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +D++       + E      + KML P  KP       +  V++ VG+ G GKTT   K 
Sbjct: 63  EDLAAGHNKRRIIEQAIFSELCKMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S   SD   +A E     + 
Sbjct: 122 AYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F  K F + + 
Sbjct: 236 FKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|118602762|ref|YP_903977.1| signal recognition particle-docking protein FtsY [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567701|gb|ABL02506.1| signal recognition particle-docking protein FtsY [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 318

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 111/296 (37%), Positives = 176/296 (59%), Gaps = 2/296 (0%)

Query: 17  LTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L +    +  KL   ++ ++   + +++ + E LE LLI +DIG+    KI+E +     
Sbjct: 23  LKQLLNKSRQKLGSSLSSLLLGEKEINEDLLETLETLLITADIGINTTDKILESVRKNAS 82

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            K +     LY   +     L+        + +    VIL+VGVNG GKTT+IGKL+K  
Sbjct: 83  RKTLKDTESLYQFLKDTLDKLLIEDNQLKTNINET-FVILIVGVNGAGKTTLIGKLAKSF 141

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
            + G  +MLAAGDTFR+AA++QLKIW +R     +    G+D+A++ ++A++ AQAK +D
Sbjct: 142 QNQGKSIMLAAGDTFRAAAVEQLKIWGERNQIPVIAQTTGADSASVIFDAYQSAQAKNID 201

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           +LI DTAGRLH    LM  + K+ RV+ + +  APH  + V+D ++GQNA+ Q   F+  
Sbjct: 202 ILIADTAGRLHTQDNLMQELAKIKRVIAKQNADAPHETMLVIDGSSGQNAINQAREFNKA 261

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              +G+ +TK+DGTA+GG L  I     +P+ ++GVGEGI+DL+ F +K+F   + 
Sbjct: 262 VVLSGISITKLDGTAKGGVLFAIADELNLPIRYIGVGEGIDDLKVFQSKEFINALF 317


>gi|169335863|ref|ZP_02863056.1| hypothetical protein ANASTE_02295 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258601|gb|EDS72567.1| hypothetical protein ANASTE_02295 [Anaerofustis stercorihominis DSM
           17244]
          Length = 440

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 140/305 (45%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   KL+     +    +L     D    E+   L+ +D+   V +     L  K   
Sbjct: 2   FEALGDKLQATFKKLRGKGKLTEKDIDAALREIRMSLLEADVNYKVVKTFANNLKEKCMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V+  +  +L   S+  N    + P +I+VVGV G GKTT IGK+
Sbjct: 62  EEVLKSLTPGQQVIKIVNNELVALLGGESRDINL-ADNGPTIIMVVGVQGSGKTTSIGKM 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
                +   K ++  A D  R+AA+DQLK+  +    +    +    A  +A +  +  +
Sbjct: 121 GNFFKNKKNKKVVFVACDIHRAAAVDQLKVLGEGLDIEVFTLDKKD-AGKIAKKGVEYGK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I+DTAGR H +S +M    K+ + +       P+  L V+D+  GQ A+   +
Sbjct: 180 KIGADIIIVDTAGRQHVDSEMMEEAVKVKKAIN------PNETLFVIDSLMGQQAVDAAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG I++K+D  ARGG  + +    K P+ F   GE + D EPF     ++ I
Sbjct: 234 AFDESLEITGFILSKLDSDARGGAALSVTYITKKPIKFSAFGEKMEDFEPFHPDRVASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|76788737|ref|YP_327823.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis A/HAR-13]
 gi|237804374|ref|YP_002888528.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|76167267|gb|AAX50275.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis A/HAR-13]
 gi|231272674|emb|CAX09577.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis B/TZ1A828/OT]
          Length = 448

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 150/305 (49%), Gaps = 20/305 (6%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           +S S KL    + + +++R+ +        E+   L+ +D+     +  + ++  K   +
Sbjct: 3   SSLSQKLSNIFSSLFTAKRVTEESISDSIREVRLALLDADVNYQAVKDFIAKVKQKVVGE 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q+ +  + E +   L   S+         P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVWKHVSPGQQFIKCLHEELSSSLA--SEQTAVSLRGCPAVILLCGLQGAGKTTTCAKLA 120

Query: 133 KKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
                     KV++A+ D  R +A++QL+    +T ADF   E G+D   +A EA + A+
Sbjct: 121 DYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGADFFRRE-GNDPVDMAAEAVQHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  D++++DTAGRLH +  LM  +  + RV       +P+  L V++   GQ+A+   +
Sbjct: 180 SQGYDLVLVDTAGRLHVDDALMDELVAIARV------TSPYETLFVMNLAMGQDAVVTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG++++  DG AR G ++ +      P+ F G GE I DL PF A+  +  I
Sbjct: 234 AFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKFEGCGEKIKDLRPFNAQSMAERI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|148380409|ref|YP_001254950.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A str. ATCC 3502]
 gi|168180668|ref|ZP_02615332.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum NCTC 2916]
 gi|226949804|ref|YP_002804895.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A2 str. Kyoto]
 gi|148289893|emb|CAL84001.1| putative signal recognition particle [Clostridium botulinum A str.
           ATCC 3502]
 gi|182668550|gb|EDT80529.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum NCTC 2916]
 gi|226843332|gb|ACO85998.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A2 str. Kyoto]
 gi|322806716|emb|CBZ04285.1| signal recognition particle receptor protein FtsY (=alpha subunit)
           (TC 3.A.5.1.1) [Clostridium botulinum H04402 065]
          Length = 303

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 119/301 (39%), Positives = 186/301 (61%), Gaps = 4/301 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  KL +G   T     + I+ +++ +  +D+ + EELE++L+ +DIGV  + KI++ L 
Sbjct: 5   FFDKLKEGLTKTKDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKIIDRLR 64

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +     +   +  +I ++L         D +  P V+L++GVNGVGKTT IGK
Sbjct: 65  ERVKEEKIKDPAEIKPCLKRVILEILGEEKGSITPDTT--PKVMLIIGVNGVGKTTSIGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +S K+ + G KV++AA DTFR+AAIDQL++W+ R   D +  + GSD  A+ ++A + A+
Sbjct: 123 VSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPGAVVFDAVQAAK 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++K DVLI DTAGRLHN   LM  + K+ ++L+R    A    L VLDATTGQNA+ Q +
Sbjct: 183 SRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDATTGQNAVIQAK 242

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F +     G+I+TK+DGTA+GG +I I     IPV  +GVGEGI DL+ F +++F   +
Sbjct: 243 EFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQEFNSEEFVEAL 302

Query: 311 T 311
            
Sbjct: 303 F 303


>gi|294155880|ref|YP_003560264.1| signal recognition particle-docking protein FtsY [Mycoplasma
           crocodyli MP145]
 gi|291600360|gb|ADE19856.1| signal recognition particle-docking protein FtsY [Mycoplasma
           crocodyli MP145]
          Length = 350

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 107/300 (35%), Positives = 177/300 (59%), Gaps = 8/300 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + K   G + +S    + + ++ +  +++DD   +ELE++LI SDI   +  KI+E++  
Sbjct: 40  MEKYETGLSRSS-SFGKKLLELQNKYKKIDDEYFDELEEVLIMSDINTDLVFKIIEKIKK 98

Query: 73  KRYAKDVSVQRVLYDVSE----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +    ++   +++ ++      LI+     ++   N+  + R +V ++VGVNG GKTT I
Sbjct: 99  EVKTNNIDDPKMIGEIVADQMFLIYTNKTIVNTNLNFK-NERLNVFVMVGVNGSGKTTSI 157

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFK 187
            KL+ +    G KV++AA DTFR+ A+DQL +WA++   D V   + G+D +++ ++  +
Sbjct: 158 AKLAHRYKMQGKKVVIAAADTFRAGAVDQLSVWANKIGVDIVKPDKEGADPSSVVFKGLE 217

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    D+LIIDTAGRL N   LM  + KM  V+++  P APH  L VLD TTGQN L 
Sbjct: 218 YAKNNYYDLLIIDTAGRLQNKINLMKELEKMFGVIRKFVPDAPHEALLVLDGTTGQNGLS 277

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q ++F  V   +G+I+TKMDGT++GG +I I     + V  LG+GE ++DL+ F    F 
Sbjct: 278 QAKVFKEVCQLSGIILTKMDGTSKGGIVISIKDEFDLNVKLLGLGEKLDDLQEFDLDLFI 337


>gi|255082746|ref|XP_002504359.1| type II secretory pathway family [Micromonas sp. RCC299]
 gi|226519627|gb|ACO65617.1| type II secretory pathway family [Micromonas sp. RCC299]
          Length = 512

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 144/308 (46%), Gaps = 18/308 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVA----QKIVEELLT 72
                  L   +  +     +D+ V     +E+   L+++D+ V       + IV+++  
Sbjct: 3   LGELGSALAGALRKLGEHTVVDEEVMDACLKEVTKALLQADVNVQYVVQMKKNIVKQVNI 62

Query: 73  KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVI 128
           +  A  ++ +++L   V   +  ML          F     +P+V++ VG+ G GKTT  
Sbjct: 63  QELAAGLNARKLLEKAVFNELVNMLEGGGAEVKEKFVPKKGKPNVVMFVGLQGCGKTTTC 122

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            K +      G K  L   DTFR+ A DQLK  A +    F  S   +D A +A +  ++
Sbjct: 123 TKYAYHFQKKGYKPALVCADTFRAGAFDQLKQNATKARIPFYGSYTETDPAKIAADGVER 182

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +K D++I+DT+GR      L   + ++   ++      P   + V+D++ GQ A  Q
Sbjct: 183 FKDEKNDLIIVDTSGRHKQEDSLFEEMRQVAAAVQ------PDMTIFVMDSSIGQAAQDQ 236

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F A      +I+TK+DG A+GGG I  V   K P+ F+G GE I++ E F  K F +
Sbjct: 237 ARAFKATVDVGSVIITKLDGHAKGGGAISAVAATKSPIAFIGTGEHIDEFEAFDTKPFVS 296

Query: 309 VITGCLDY 316
            + G  D+
Sbjct: 297 RLLGLGDW 304


>gi|189440099|ref|YP_001955180.1| signal recognition particle GTPase [Bifidobacterium longum DJO10A]
 gi|189428534|gb|ACD98682.1| Signal recognition particle GTPase [Bifidobacterium longum DJO10A]
          Length = 423

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 172/315 (54%), Gaps = 7/315 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  +      S + +L    A +     + + DI++   L +   E++ED L+ +D+G  
Sbjct: 110 AKPETPESVGSRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGAD 169

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----RPHVILVV 117
            + ++V++L T       +    +    +     L+        +       +P VI++V
Sbjct: 170 ASAQLVDDLRTDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPGAAKPSVIIMV 229

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT  GKL++       +VM+ A DTFR+AA DQL+ W  R +   V S+  G+
Sbjct: 230 GVNGTGKTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGA 289

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL V
Sbjct: 290 DPASVAFEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLP--VDEVLLV 347

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +
Sbjct: 348 LDATTGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPD 407

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF  + F   I 
Sbjct: 408 DLAPFDPEGFVDGIL 422


>gi|116629439|ref|YP_814611.1| Signal recognition particle GTPase [Lactobacillus gasseri ATCC
           33323]
 gi|311110913|ref|ZP_07712310.1| signal recognition particle-docking protein FtsY [Lactobacillus
           gasseri MV-22]
 gi|116095021|gb|ABJ60173.1| signal recognition particle-docking protein FtsY [Lactobacillus
           gasseri ATCC 33323]
 gi|311066067|gb|EFQ46407.1| signal recognition particle-docking protein FtsY [Lactobacillus
           gasseri MV-22]
          Length = 449

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 176/312 (56%), Gaps = 7/312 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S++KVA +      +  KG   T+      +    +  R +D+   ++LEDLLI SD+G 
Sbjct: 131 SDEKVAEKEDEQ-ERYDKGLEKTNHSFGARLNAFFAKFRTVDEDFFDDLEDLLIESDVGF 189

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVIL 115
             A+++ + L  +   ++      L  V      ++  K           D   +P+V L
Sbjct: 190 ETAEELTDSLRDEAKLQNAKSHDDLKQVIVEKLVDIYDKGGEGEDSKLADDPDAKPNVYL 249

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNG GKTT IGKL+K++ D+G  VM+ A DTFR+ A++QL  W  R   + V     
Sbjct: 250 FVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVEVVTGPEK 309

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++ Y+  K+A+ + +D L++DTAGRL N   LM+ + K+ R +K++ P  P+ VL 
Sbjct: 310 ADPASVVYDGVKKAKDRGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPDQPNEVLL 369

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE +
Sbjct: 370 VLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKLVGLGEKV 429

Query: 296 NDLEPFVAKDFS 307
           +DL  F A+ F+
Sbjct: 430 DDLANFDAEKFA 441


>gi|312133444|ref|YP_004000783.1| ftsy [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772675|gb|ADQ02163.1| FtsY [Bifidobacterium longum subsp. longum BBMN68]
          Length = 423

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 172/315 (54%), Gaps = 7/315 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  +      S + +L    A +     + + DI++   L +   E++ED L+ +D+G  
Sbjct: 110 AKPETPESVGSRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGAD 169

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----RPHVILVV 117
            + ++V++L T       +    +    +     L+        +       +P VI++V
Sbjct: 170 ASAQLVDDLRTDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPGAAKPSVIIMV 229

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT  GKL++       +VM+ A DTFR+AA DQL+ W  R +   V S+  G+
Sbjct: 230 GVNGTGKTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGA 289

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL V
Sbjct: 290 DPASVAFEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLP--VDEVLLV 347

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +
Sbjct: 348 LDATTGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPD 407

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF  + F   I 
Sbjct: 408 DLAPFDPEGFVDGIL 422


>gi|322375334|ref|ZP_08049847.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           C300]
 gi|321279597|gb|EFX56637.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           C300]
          Length = 351

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 177/314 (56%), Gaps = 7/314 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +++     +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 36  EEELPQVEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 95

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVV 117
           VA  + EEL  +   ++      L  V  +I K++    K  N+D    F     V+L V
Sbjct: 96  VASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQDGLTVMLFV 153

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ + + AG KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 154 GVNGVGKTTSIGKLAHRYNQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKAD 213

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     L
Sbjct: 214 PASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLAL 273

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D
Sbjct: 274 DASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDD 333

Query: 298 LEPFVAKDFSAVIT 311
           +  F +++F   + 
Sbjct: 334 IGEFNSENFMKGLL 347


>gi|332367150|gb|EGJ44886.1| cell division protein FtsY [Streptococcus sanguinis SK1059]
          Length = 506

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 172/307 (56%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  +
Sbjct: 196 PQEESTQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVASSL 255

Query: 67  VEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            EEL  +   ++      L    + +L+             +F +   V+L VGVNGVGK
Sbjct: 256 TEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVNGVGK 315

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++ Y+
Sbjct: 316 TTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASVVYD 375

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQN
Sbjct: 376 GMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDASTGQN 435

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F ++
Sbjct: 436 ALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSE 495

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 496 NFMKGLL 502


>gi|125624534|ref|YP_001033017.1| signal recognition particle-docking protein [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|124493342|emb|CAL98316.1| signal recognition particle-docking protein [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071328|gb|ADJ60728.1| signal recognition particle-docking protein [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 459

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 122/300 (40%), Positives = 178/300 (59%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +K  +    T     +G  ++ ++ R +D+   EELE+ LI SD+GV +A ++ EEL  +
Sbjct: 156 KKYEQSLTLTRKTFSDGFNELFANFRTVDEEFFEELEETLIMSDVGVDLAMEVTEELRKE 215

Query: 74  RYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKL 131
               +      L  +  E I         P   D  S    V L VGVNGVGKTT IGKL
Sbjct: 216 AKLVNAKSTDDLRQLIIEKIVDKFDGEKLPTKLDIQSDGLSVFLFVGVNGVGKTTTIGKL 275

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +  + G KV+LAA DTFR+ AIDQL  W +R+  + V    GSD AA+ ++A  +A+A
Sbjct: 276 AARYKNEGKKVLLAAADTFRAGAIDQLVEWGNRSGVEVVTKPAGSDPAAVVFDALAKAKA 335

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+L++DTAGRL N   LM  + K+ +V+KR  P APH  +  LDATTGQNA++Q + 
Sbjct: 336 ENYDILLVDTAGRLQNKDNLMKELEKIGKVIKREIPDAPHETILALDATTGQNAIQQAKE 395

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F AV   TG+ +TK+DG+A+GG ++ IV + KIPV  +G+GE +NDL+ F  + F   + 
Sbjct: 396 FSAVTPITGIALTKLDGSAKGGIVLSIVQSLKIPVKLIGLGEKLNDLQDFDEEFFVRGLF 455


>gi|302191492|ref|ZP_07267746.1| signal recognition particle GTPase [Lactobacillus iners AB-1]
 gi|312871862|ref|ZP_07731946.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 3008A-a]
 gi|311092584|gb|EFQ50944.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LEAF 3008A-a]
          Length = 337

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 172/314 (54%), Gaps = 11/314 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
            + ++  +         +G   TS  L E +   ++  R +D+   ++LEDLLI +D+G 
Sbjct: 19  KDSEITKKDNDIQATYDRGLKKTSNSLGEKLNSFLAQFRTIDEDFFDDLEDLLIEADVGY 78

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHV 113
             A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S         P V
Sbjct: 79  ETAELLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILKTGDMPAV 135

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R     +   
Sbjct: 136 FLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVDVQVISGN 195

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  P  P  +
Sbjct: 196 TNADPSSVVYEGLECAVNNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKIPDQPQEI 255

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+D +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE
Sbjct: 256 LLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPVKLVGLGE 315

Query: 294 GINDLEPFVAKDFS 307
              DL  F A+ F+
Sbjct: 316 KAEDLAEFDAEKFA 329


>gi|60620671|ref|NP_341888.2| signal recognition particle receptor protein [Sulfolobus
           solfataricus P2]
 gi|261601953|gb|ACX91556.1| signal recognition particle-docking protein FtsY [Sulfolobus
           solfataricus 98/2]
          Length = 358

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/302 (29%), Positives = 153/302 (50%), Gaps = 18/302 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
                K    I D+   R + +       EEL   L+ SD+   V +KI+E+L      K
Sbjct: 62  TKEERKSGGSIFDVFRYREIKEKDIEDFIEELRYQLLESDVSFEVTEKILEDLKENIIGK 121

Query: 78  DVSVQRVL-YDVSELIHKMLMPLSKPFN-------WDFSHRPHVILVVGVNGVGKTTVIG 129
            V     L   V + + K +  +    N          S +P++I+  G+NGVGKTT I 
Sbjct: 122 KVKRSDDLERIVKDSLKKSITEIITKNNAINVLEEIKKSPKPYIIIFFGINGVGKTTTIA 181

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K +  +   GL  +++A DTFR+AA +QL++ +       +    G D A++A++A + A
Sbjct: 182 KFAYMLKKNGLSCIISASDTFRAAAQEQLEVHSRNLEIPLIKGRYGGDPASVAFDAIRAA 241

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +++ +DV++IDTAGR+H ++ L+     + RV+    P+     + VLD+  G +AL Q 
Sbjct: 242 KSRGIDVVLIDTAGRMHTDTDLVNE---LKRVVNIAKPNLK---ILVLDSLGGNDALEQA 295

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F    G   +I+TK+D   +GG ++ +      PV +LG+G+  +DL PF A+ F   
Sbjct: 296 KYFENNVGFDLVILTKVDADVKGGVILSLAYELNKPVGYLGIGQAYDDLIPFNAEWFIQR 355

Query: 310 IT 311
           + 
Sbjct: 356 LF 357


>gi|282856889|ref|ZP_06266145.1| signal recognition particle protein [Pyramidobacter piscolens
           W5455]
 gi|282585246|gb|EFB90558.1| signal recognition particle protein [Pyramidobacter piscolens
           W5455]
          Length = 436

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 103/313 (32%), Positives = 161/313 (51%), Gaps = 20/313 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   +L+   + +    +L +        E+   L+ +D+   V + +VE++  +   
Sbjct: 2   FDALKERLERIFSGLRGRGKLTEEDVQQALREVRRALLEADVNYKVVKDLVEKIRVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            DV       Q+V   V E I +++   S+  +      P ++++VG+ G GKTT   KL
Sbjct: 62  ADVLGSIMPAQQVSAVVYEEIARIMGEGSRGIDIS-PQPPTLVMMVGLQGGGKTTSSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQ 190
           +KK+S    K ML A D  R AA+DQL++ A +    F   E G  D  AL+  A   A 
Sbjct: 121 AKKLS-KSHKPMLVACDLRRPAAVDQLRVLAGQAGVAFFGPEAGESDVVALSQRALAYAA 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +  +DVLI DTAGRL  +  +MA + +M   L      APH +L V+DA +GQ AL   E
Sbjct: 180 SHLIDVLIFDTAGRLAVDEEMMAELDRMKAAL------APHEILLVVDAMSGQEALNVAE 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG++++K+DG ARGG  + ++    +PV F GVGEG++ +E F  +  +  I
Sbjct: 234 AFNNRLGVTGVVLSKLDGDARGGAALAVLAATGVPVKFAGVGEGLDAIEQFDPRRMAERI 293

Query: 311 TGCLDYGE--EKI 321
            G  D     EKI
Sbjct: 294 MGMGDMAGLVEKI 306


>gi|256832211|ref|YP_003160938.1| signal recognition particle-docking protein FtsY [Jonesia
           denitrificans DSM 20603]
 gi|256685742|gb|ACV08635.1| signal recognition particle-docking protein FtsY [Jonesia
           denitrificans DSM 20603]
          Length = 391

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 118/309 (38%), Positives = 183/309 (59%), Gaps = 10/309 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             + +L    AS+   L + +  ++S   + D   +++EDLL+ +D+GV  A ++++ L 
Sbjct: 82  GRMARLRHRLASSGSPLGQRLLVMLSQDHIADSDWDDIEDLLLMADLGVGPATELIDALR 141

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMP-LSKPFNWDFS-----HRPHVILVVGVNGVGK 124
           T+   + +     L   V E +  ++ P L +  + D S     H P VI+VVGVNG GK
Sbjct: 142 TRVRVEAIKDPVALRALVREELLTLVDPTLDRSLHLDTSVSTPPHAPAVIVVVGVNGTGK 201

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAY 183
           TT IGKL++ +   G  V+L A DTFR+AA DQL+ W ++     V     G+D A++A+
Sbjct: 202 TTTIGKLTRVLVAEGKDVLLGAADTFRAAAADQLQTWGEQVGVRTVRADRDGADPASVAF 261

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A +Q +   VDV+++DTAGRL N + LM  + K+ RV+ R  P     VL VLDATTGQ
Sbjct: 262 DAVRQGRTNSVDVVVVDTAGRLQNKTGLMDELSKITRVITREAP--ISEVLLVLDATTGQ 319

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N + Q  +F  VAG TG+++TK+DGTARGG ++ +     +PV  +G+GEG +DL PF  
Sbjct: 320 NGMNQARVFSEVAGVTGIVLTKLDGTARGGIVVAVQRELGVPVKLVGLGEGPDDLAPFDP 379

Query: 304 KDFSAVITG 312
           ++F   + G
Sbjct: 380 EEFVDGLLG 388


>gi|332797104|ref|YP_004458604.1| GTP-binding signal recognition particle SRP54 G-domain-containing
           protein [Acidianus hospitalis W1]
 gi|332694839|gb|AEE94306.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Acidianus hospitalis W1]
          Length = 449

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 140/302 (46%), Gaps = 14/302 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
             +    +++ +T   S  +  +   +EL+  LI +D+ V +   +  ++  +   +   
Sbjct: 2   LDNLRDAVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPP 61

Query: 81  V-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 +  +  V + +  +     +P        P+VI++VGV G GKTT  GKL+   
Sbjct: 62  TYIERREWFIKIVYDELSNLFGGDKEPKVIP-DKIPYVIMLVGVQGTGKTTTAGKLAYFY 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV L   D +R AA++QL+   ++            DA  +A    ++   +K++
Sbjct: 121 KKKGFKVGLVGADVYRPAALEQLQQLGEQIGVPVYGEPGEKDAVGIAKRGVEKFLNEKME 180

Query: 196 VLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           ++I+DTAGR      + L+  +  +   +K      P  V  V+DA+ GQ A      F+
Sbjct: 181 IIIVDTAGRHGYGEEAALLEEMKNIYEAIK------PDEVTLVIDASIGQKAYDLASKFN 234

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             +    +I+TKMDGTA+GGG +  V      + F+G GE I++LE F  + F A I G 
Sbjct: 235 QASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARILGM 294

Query: 314 LD 315
            D
Sbjct: 295 GD 296


>gi|309808659|ref|ZP_07702551.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168133|gb|EFO70259.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 01V1-a]
          Length = 337

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 172/314 (54%), Gaps = 11/314 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
            + ++  +         +G   TS  L E +   ++  R +D+   ++LEDLLI +D+G 
Sbjct: 19  KDSEITKKDNDIQATYDRGLKKTSNSLGEKLNSFLAQFRTIDEDFFDDLEDLLIEADVGY 78

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHV 113
             A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S         P V
Sbjct: 79  DTAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILKTGDMPAV 135

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R     +   
Sbjct: 136 FLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVDVQVISGN 195

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  P  P  +
Sbjct: 196 TNADPSSVVYEGLECAVKNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKIPDQPQEI 255

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+D +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE
Sbjct: 256 LLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPVKLVGLGE 315

Query: 294 GINDLEPFVAKDFS 307
              DL  F A+ F+
Sbjct: 316 KAEDLAEFDAEKFA 329


>gi|124486290|ref|YP_001030906.1| signal recognition particle protein Srp54 [Methanocorpusculum
           labreanum Z]
 gi|166222334|sp|A2STI3|SRP54_METLZ RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|124363831|gb|ABN07639.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanocorpusculum labreanum Z]
          Length = 446

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 143/306 (46%), Gaps = 22/306 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           G  + S  LK+ +  +     +D    D +  +L+  L+ SD+ V +  ++ +++  +  
Sbjct: 2   GLDTLSNSLKDAMKKLAGKTVIDRAAVDELVRDLQRALLSSDVNVKLVMELSKQIKARSL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +D+       + VL  V + +  ++   ++     FS +P  IL+ G+ G GKTT  GK
Sbjct: 62  DEDLPKGINAREHVLRIVYQELVNLVGKEAE-----FSLKPQKILMAGLQGSGKTTTTGK 116

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L +     GLKV     D FR  A  QL+    + +          DA  +  +    A 
Sbjct: 117 LCRYFQRKGLKVGAIGADNFRPGAYAQLETLCKKINVPSYGDPKEKDAVKIVKDGL--AA 174

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K VDV+I+DTAGR      L+  I ++   L       P     V+DA  GQ A  Q +
Sbjct: 175 LKDVDVIIVDTAGRHALEDDLIDEITQVNAYLN------PDHRWLVIDAALGQAARDQAK 228

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G  G+I+TKMDGTA+GGG +  V   +  + F+G GE I+DLE F    F + +
Sbjct: 229 RFHEAIGIDGVIVTKMDGTAKGGGAMSAVAETQSGIVFIGNGETIDDLERFDPNGFISRL 288

Query: 311 TGCLDY 316
            G  D 
Sbjct: 289 LGMGDL 294


>gi|223041283|ref|ZP_03611526.1| signal recognition particle-docking protein FtsY [Campylobacter
           rectus RM3267]
 gi|222877450|gb|EEF12588.1| signal recognition particle-docking protein FtsY [Campylobacter
           rectus RM3267]
          Length = 289

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 100/296 (33%), Positives = 159/296 (53%), Gaps = 17/296 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREE-LEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T       +  I SS+  D  + +E LE++L+ +DI   + ++I+  L  +  
Sbjct: 5   LKKGLDKT-------LAAIRSSKPADKKISKEILEEILLEADIAYEIVEEILYYLPPQNE 57

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            K         D+  L++     + +      S +P V L++GVNG GKTT I KL+   
Sbjct: 58  VKK-------DDLKRLLNTYF--IYEEGREAKSGKPFVELILGVNGAGKTTTIAKLANLY 108

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
            ++G  V+L A DTFR+ AI+QL+ WA R     V ++ G D +A+A++    A AK +D
Sbjct: 109 KNSGKSVILGACDTFRAGAIEQLRQWAQRAGVPIVATQQGHDPSAVAFDTIGSAVAKNLD 168

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
            +I+DTAGRL N + L   + K++R+  R    APH  + +LD T G   L Q + F+ +
Sbjct: 169 NVILDTAGRLQNQTNLAGELSKIVRIAGRAYAGAPHRKILILDGTQGNAGLAQAKAFNDM 228

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
               G+I+TK+DGT +GG L  +    ++P+ ++G GE ++DL  F   DF   I 
Sbjct: 229 VSLDGVIITKLDGTPKGGALFSVARELELPILYIGTGETMDDLIKFDPHDFVDTIV 284


>gi|300814487|ref|ZP_07094748.1| signal recognition particle-docking protein FtsY [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|300511405|gb|EFK38644.1| signal recognition particle-docking protein FtsY [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 421

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 123/317 (38%), Positives = 190/317 (59%), Gaps = 7/317 (2%)

Query: 1   MSNQKVASE---SLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRS 56
           + N +  +E    +++ +KL  G   T  ++   I  ++ +  ++DD + E+LED+LI +
Sbjct: 107 LDNDEAPNEDKGKVNFFKKLMSGLDKTRKEVGIKINTVMGNYVKIDDDMLEDLEDILISA 166

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVIL 115
           D+G+    K+++ L      + ++    + D+ +   K L  +++  N   S   P +IL
Sbjct: 167 DVGMDTTMKLIDNLRETIIKEKINDPSKVKDILKSETKKL--MNEELNKGISDVSPSIIL 224

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT IGKL+K+  D G  V++AA DTFR+AAIDQLK W  R + D +    G
Sbjct: 225 VVGVNGVGKTTTIGKLAKRYKDEGKSVLIAAADTFRAAAIDQLKEWGSRVNVDIISHSEG 284

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D AA+ ++A   A+++  D+LI+DTAGRLHN + LM  + K+ R++ +  P A    L 
Sbjct: 285 QDPAAVVFDAITAAKSRNADILIVDTAGRLHNKANLMKELEKINRIIDKKYPEAYRETLL 344

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQNA+ Q + F      TG+ +TK+DGTA+GG +I +    +IP+  +GVGEGI
Sbjct: 345 VLDATTGQNAMNQAKTFKEAVNITGIALTKLDGTAKGGVVIALQSELQIPIKLVGVGEGI 404

Query: 296 NDLEPFVAKDFSAVITG 312
            DL+ F   +F   I G
Sbjct: 405 YDLQDFNLDNFLQGIFG 421


>gi|23335671|ref|ZP_00120905.1| COG0552: Signal recognition particle GTPase [Bifidobacterium longum
           DJO10A]
          Length = 425

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 172/315 (54%), Gaps = 7/315 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  +      S + +L    A +     + + DI++   L +   E++ED L+ +D+G  
Sbjct: 112 AKPETPESVGSRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGAD 171

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----RPHVILVV 117
            + ++V++L T       +    +    +     L+        +       +P VI++V
Sbjct: 172 ASAQLVDDLRTDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPGAAKPSVIIMV 231

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT  GKL++       +VM+ A DTFR+AA DQL+ W  R +   V S+  G+
Sbjct: 232 GVNGTGKTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGA 291

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL V
Sbjct: 292 DPASVAFEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLP--VDEVLLV 349

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +
Sbjct: 350 LDATTGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPD 409

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF  + F   I 
Sbjct: 410 DLAPFDPEGFVDGIL 424


>gi|332362458|gb|EGJ40258.1| cell division protein FtsY [Streptococcus sanguinis SK1056]
          Length = 506

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 173/307 (56%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  +
Sbjct: 196 PQEESTQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVASSL 255

Query: 67  VEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            EEL  +   ++      L    + +L+             +F +   V+L VGVNGVGK
Sbjct: 256 TEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVNGVGK 315

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++ Y+
Sbjct: 316 TTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASVVYD 375

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           + ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQN
Sbjct: 376 SMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDASTGQN 435

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F ++
Sbjct: 436 ALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSE 495

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 496 NFMKGLL 502


>gi|323341682|ref|ZP_08081915.1| signal recognition particle protein [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464107|gb|EFY09300.1| signal recognition particle protein [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 431

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 152/305 (49%), Gaps = 20/305 (6%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L++   ++    +L +        E+   L+ +D+ + V  +++E   ++  
Sbjct: 2   AFDNLTNRLQDTFRNMTGKGKLSEKNITDALSEIRISLLEADVSLDVINELLEHTRSEAL 61

Query: 76  AKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              V+      Q  +  V++ + ++L         DF+ +P ++++VG+ G GKTT I K
Sbjct: 62  GMKVTRDVEPSQMFVKIVNDKLIEILGEEKSEL--DFNQKPGILMMVGLQGSGKTTTIAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ K++  G KV+L A D  R AAI+QLKI   +   +    E  S    +   A    +
Sbjct: 120 IANKLNKEGKKVLLVAADLARPAAIEQLKILGTQIGVEVFAQE-NSTPVEVVKNALAHGK 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D+++IDTAGRL  +  LM  +  +  + K      P  +L  +DA +GQ+ +    
Sbjct: 179 D--FDLILIDTAGRLQIDDALMQQLVDIQALTK------PDEILLSVDAMSGQDVIHVAN 230

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TGL+ TK DG +RGG ++ +    ++PV F+GVGEGI++L+ F     ++ I
Sbjct: 231 GFKEKLNITGLVATKFDGDSRGGSILSVRYMTQVPVKFVGVGEGIDELDEFYPDRTASRI 290

Query: 311 TGCLD 315
            G  D
Sbjct: 291 LGMGD 295


>gi|123965244|ref|YP_001010325.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9515]
 gi|123199610|gb|ABM71218.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9515]
          Length = 415

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 102/312 (32%), Positives = 174/312 (55%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ + + W+ KL KG   T       + D +    L     ++LE LLIR+D+G+    
Sbjct: 101 EISIDEIDWLSKLRKGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDSTD 160

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVN 120
           K+++ L  K   + V  +  +  +   +  ++    K    +       + +V L+VGVN
Sbjct: 161 KVIDSLRKKLNEEVVGGEEGIKFLKGELRAIIDKPIKDSGINILVPQKGKLNVWLIVGVN 220

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+   S +  K ++AA DTFR+AA++QL++W  R+  + + ++  + D A
Sbjct: 221 GVGKTTTLGKLAYLSSKSNYKTLIAAADTFRAAAVEQLQVWGHRSKVEVISNQSKNADPA 280

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A  +  D+L++DTAGRL   + LM  + K+ R++ +  P A    L VLDA
Sbjct: 281 AVVFDALNAANKRNSDLLLVDTAGRLQTKNNLMDELSKIKRIIDKKVPDAIVESLLVLDA 340

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN L+Q + F   A  +G ++TK+DGT+RGG  + +     +P+ F+G GEGI DL 
Sbjct: 341 SQGQNGLKQAKSFAKSANLSGAVITKLDGTSRGGVSLAVSAEVNLPIRFIGAGEGIKDLR 400

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 401 PFNSFEFVEALL 412


>gi|71082962|ref|YP_265681.1| signal recognition particle protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062075|gb|AAZ21078.1| signal recognition particle protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 452

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/309 (25%), Positives = 145/309 (46%), Gaps = 16/309 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT  F      LK+  +  +  +++D+G+R  +   L+ +D+ + VA+  + ++  
Sbjct: 1   MFENLTNKFEEIFSSLKKAPS--LDEKQVDEGLR-AIRQALLEADVSLDVAKDFIAKVKP 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K   +++         V+  V + +  +L   +   N +    P  +++VG+ G GKTT 
Sbjct: 58  KVLGQEIIRSTSPGDMVVKIVYDELVSLLGESNTDINLNAV-PPVPMMLVGLQGSGKTTT 116

Query: 128 IGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL+K +     K +M+ + D +R AA +QL+   ++ +   +    G   A +   A 
Sbjct: 117 TAKLAKYLEKNKKKKIMMVSLDVYRPAAQEQLRSLGEQNNILTLPIIEGQLPADICRRAV 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A     ++++ DTAGR   +  +M+ I ++  ++       P     V D+ TGQ A 
Sbjct: 177 SAASLNGAEIILFDTAGRTQIDLQMMSEIKQIENIIN------PTETFLVADSLTGQVAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F      TG+++T+ DG ARGG  + +    ++P+ FLGVGE I +LE F     
Sbjct: 231 EVAKEFKNTVNLTGIVLTRADGDARGGAALSMKYVSQVPIKFLGVGEKIENLEVFHPDRI 290

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 291 ANRILGMGD 299


>gi|26553936|ref|NP_757870.1| signal recognition particle GTPase FtsY [Mycoplasma penetrans HF-2]
 gi|26453944|dbj|BAC44274.1| signal recognition particle GTPase FtsY [Mycoplasma penetrans HF-2]
          Length = 354

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 170/302 (56%), Gaps = 5/302 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +K  +G   +S  L + IT+I+   +++D+   E +E+LLI  D+GV    KI + +  +
Sbjct: 48  KKFDEGLKKSSSTLSKAITEIVKKFKKVDEEFYENIEELLISYDVGVLATNKITDAIREE 107

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGK 130
              ++V    ++    V ++    +         D    R +++L++GVNGVGKTT I K
Sbjct: 108 ITFQNVEDPDLIKEIIVDKIFTYYIQDTDTNTFLDIKKDRTNILLIMGVNGVGKTTSIAK 167

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQA 189
           ++        KV+L AGDTFR+ A++QL IW+ R   D V   + G D A++ +   K+ 
Sbjct: 168 IANHFIKKDKKVLLVAGDTFRAGAVEQLNIWSQRLKCDIVLPDKEGQDPASVIFTGVKKG 227

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D++I DT+GRLHN   LM  + K+  V+ + D  APH  L VLDAT GQ+ + Q 
Sbjct: 228 KDENYDLVICDTSGRLHNKINLMKELEKIHSVIHKFDDTAPHENLLVLDATLGQSGIMQA 287

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  +   TG+I+TKMDGT++GG ++ I     IPV ++G+GE + DL  F  + F   
Sbjct: 288 KAFKEITNITGIILTKMDGTSKGGIVLSIKDNFNIPVKYIGLGEKLEDLSAFDLEKFVDG 347

Query: 310 IT 311
           IT
Sbjct: 348 IT 349


>gi|255553241|ref|XP_002517663.1| signal recognition particle 54 kD protein, putative [Ricinus
           communis]
 gi|223543295|gb|EEF44827.1| signal recognition particle 54 kD protein, putative [Ricinus
           communis]
          Length = 497

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 139/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   I  + ++  +D+        E+   L++SD+   + + +   +      
Sbjct: 3   LAQLGGSISRAIQQMSNATIIDEKALNDCLNEITRALLQSDVQFKLVRDMQTNIKKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            D++       + +      + KML P  KP       +  V++ VG+ G GKTT   K 
Sbjct: 63  DDLAAGHNKRKIIQQAIFNELCKMLDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + 
Sbjct: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATK------PDLVIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F  K F + + 
Sbjct: 236 FKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|296171447|ref|ZP_06852733.1| cell division protein FtsY [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894133|gb|EFG73893.1| cell division protein FtsY [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 434

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 168/306 (54%), Gaps = 9/306 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             + +L    A +   +   +  +I    LD+   +++ED L+ +D+G  V + ++ +L 
Sbjct: 133 GRLERLRGRLARSQNAIGRSVLGLIGGGDLDEDAWQDVEDTLLVADLGPVVTESVMSQLR 192

Query: 72  TK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTT 126
            +        +   + +L DV  LI ++   + +          P V+LVVGVNG GKTT
Sbjct: 193 GRLAGGAVRTEADAKAILRDV--LIRELHPDMDRSIRALPHDDHPSVLLVVGVNGTGKTT 250

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A+ V    G+D A++A++A 
Sbjct: 251 TVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWASRVGAEVVRGAEGADPASVAFDAV 310

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +  A   DV++IDTAGRLH    LM  + K+ RV+ R    A   VL VLDAT GQN L
Sbjct: 311 DKGIASGADVVLIDTAGRLHTKVGLMDELDKVKRVVTRR--AAVDEVLLVLDATIGQNGL 368

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F  V   TG ++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    F
Sbjct: 369 AQARVFAEVVEITGAVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAF 428

Query: 307 SAVITG 312
              + G
Sbjct: 429 VDALLG 434


>gi|238620250|ref|YP_002915076.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus M.16.4]
 gi|238381320|gb|ACR42408.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus M.16.4]
          Length = 310

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 93/292 (31%), Positives = 158/292 (54%), Gaps = 18/292 (6%)

Query: 32  ITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-Y 86
           I D+   + + +       EEL   L+ SD+   VA+KI+E+L      K V     L  
Sbjct: 24  IFDVFRYKEIKEKDIEDFIEELRYQLLESDVSFEVAEKILEDLKENIIGKKVRRSEDLER 83

Query: 87  DVSELIHKMLMPL---SKPFN----WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
            V + + K +  +   +KP N       S +P++I+  G+NGVGKTT I K +  +   G
Sbjct: 84  IVKDSLKKSITEIITKNKPMNVLEEIKKSTKPYIIIFFGINGVGKTTTIAKFAYMLKKNG 143

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
           L  +++A DTFR+AA +QL+I A       +  + G D A++AY+A + A+++ +DV++I
Sbjct: 144 LSCIISASDTFRAAAQEQLEIHARNLEIPLIKGKYGGDPASVAYDAIRAAKSRGIDVVLI 203

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGR+H ++ L+  + +++ +        P+  + VLD+  G +AL Q + F    G  
Sbjct: 204 DTAGRMHTDTDLVNELKRVVNI------TRPNLKILVLDSLGGNDALEQAKYFENNVGFD 257

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            +I+TK+D   +GG ++ +      PV +LGVG+  +DL PF A+ F   + 
Sbjct: 258 LVILTKVDADVKGGVILSLAYELNKPVGYLGVGQTYDDLIPFNAEWFIQRLF 309


>gi|294790256|ref|ZP_06755414.1| signal recognition particle-docking protein FtsY [Scardovia
           inopinata F0304]
 gi|294458153|gb|EFG26506.1| signal recognition particle-docking protein FtsY [Scardovia
           inopinata F0304]
          Length = 395

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 114/319 (35%), Positives = 177/319 (55%), Gaps = 9/319 (2%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +   +   +  S I +L    A+++    + +  I++   L +   E++ED L+ +D+G 
Sbjct: 78  LETLEAPEKPQSRIVRLRSELAASANPFGKVLFSILTRDNLSESDWEDVEDTLLLADVGA 137

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPF----NWDFSHRPHVI 114
             ++ +V +L T           V+  +  S L++ +   + +        D S  P  I
Sbjct: 138 DTSEDLVNQLKTDARITGQKDPAVVRSMLRSRLLNLVDSTMDRSLAAHRQKDDSTVPSAI 197

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE- 173
           ++VGVNG GKTT  GKL++     G  V+L A DTFR+AA DQL+ W  R +   V S+ 
Sbjct: 198 IMVGVNGSGKTTTAGKLARLFVAEGKSVILGAADTFRAAAADQLETWGSRINVPVVRSDH 257

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G+D A++A+EA ++A+    DVLIIDTAGRL N + LM  +GK+ RV ++  P     V
Sbjct: 258 EGADPASVAFEAAQKARDSHADVLIIDTAGRLQNKANLMDELGKIRRVTEKTLP--VDEV 315

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLDATTGQN L Q  +F    G TG+++TK+DG+A+GG +I +     +PV  +G+GE
Sbjct: 316 LLVLDATTGQNGLEQARVFSQAIGITGVVLTKLDGSAKGGIVISVQKALGVPVKLVGLGE 375

Query: 294 GINDLEPFVAKDFSAVITG 312
           G +DL  F  + F   I G
Sbjct: 376 GPDDLSDFDPESFVDGILG 394


>gi|332655287|ref|ZP_08421027.1| signal recognition particle-docking protein FtsY [Ruminococcaceae
           bacterium D16]
 gi|332515792|gb|EGJ45402.1| signal recognition particle-docking protein FtsY [Ruminococcaceae
           bacterium D16]
          Length = 305

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 115/303 (37%), Positives = 174/303 (57%), Gaps = 16/303 (5%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  KL K      + +            L D   +ELE+ LI +D G+    ++VEEL
Sbjct: 17  MGFFDKLKK------INIFANF-----GSELTDDFYDELEESLILADTGMDTTLELVEEL 65

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGVGKTTVI 128
             +   + +     + +  E + +++           + S +P V+L +GVNGVGKTT I
Sbjct: 66  RGRVREEHIKT---VEEARECMCRVITDAMTVGEPTLNLSTKPAVVLFIGVNGVGKTTTI 122

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK+  ++ +   KV+L A DTFR+AA +QL IWA+R+  + +    G+D AA+ ++A   
Sbjct: 123 GKIGHQLKNERKKVLLCAADTFRAAAAEQLTIWAERSGVEIIKQHEGADPAAVVFDAASA 182

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A++ DV++IDTAGRLHN   LM  + K+ RV+ R  P      L VLDATTGQN L Q
Sbjct: 183 AKARRADVVLIDTAGRLHNKQNLMNELNKISRVIDRELPDCARETLLVLDATTGQNGLIQ 242

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F   AG TG+++TK+DGTA+GG  I I     +PV + GVGEGI+DL+PF A +F+ 
Sbjct: 243 AKQFKEAAGITGIVLTKLDGTAKGGIAIAIAKELGVPVKYAGVGEGIDDLKPFDAAEFAQ 302

Query: 309 VIT 311
            + 
Sbjct: 303 ALI 305


>gi|313836653|gb|EFS74367.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL037PA2]
 gi|314928161|gb|EFS91992.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL044PA1]
 gi|314972159|gb|EFT16256.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL037PA3]
 gi|328907977|gb|EGG27737.1| signal recognition particle-docking protein FtsY [Propionibacterium
           sp. P08]
          Length = 396

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 113/292 (38%), Positives = 178/292 (60%), Gaps = 5/292 (1%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           +++  L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L +      VS  
Sbjct: 100 NSNNALARGLAELLSADKLDDDTWDDFETTLITSDLGVGPTTELVEKLRSGLAIDGVSDP 159

Query: 83  RVLYDV--SELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
               +V   EL+  +   + +  + D    +P V+LVVGVNG GKTT  GKL++ +   G
Sbjct: 160 VHAREVLHRELVGLVGPDMDRSISLDHQEGKPAVVLVVGVNGTGKTTTCGKLARVLVAEG 219

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AA +QL+ W +R     +  + G+D A++AYEA +    + VDV+++
Sbjct: 220 KTVLLGAADTFRAAAGEQLETWGERVGVRTIRKDEGADPASVAYEAVQAGVDEGVDVVLV 279

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   T
Sbjct: 280 DTAGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLAQARIFSEVVDVT 337

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G++++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A DF   + 
Sbjct: 338 GIVLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADDFVTGLM 389


>gi|153931250|ref|YP_001384626.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A str. ATCC 19397]
 gi|153937568|ref|YP_001388143.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A str. Hall]
 gi|152927294|gb|ABS32794.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A str. ATCC 19397]
 gi|152933482|gb|ABS38981.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum A str. Hall]
          Length = 303

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 119/301 (39%), Positives = 186/301 (61%), Gaps = 4/301 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           +  KL +G   T     + I+ +++ +  +D+ + EELE++L+ +DIGV  + KI++ L 
Sbjct: 5   FFDKLKEGLTKTKDGFTDKISSVLNLAVTIDEDLYEELEEILVTADIGVDTSIKIIDRLR 64

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +   + +     +   +  +I ++L         D +  P V+L++GVNGVGKTT IGK
Sbjct: 65  ERVKEEKIKDPAEIKPCLKRVILQILGEEKGSITPDTT--PKVMLIIGVNGVGKTTSIGK 122

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +S K+ + G KV++AA DTFR+AAIDQL++W+ R   D +  + GSD  A+ ++A + A+
Sbjct: 123 VSAKLKNQGYKVIMAAADTFRAAAIDQLEVWSSRAKVDIIKHQEGSDPGAVVFDAVQAAK 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++K DVLI DTAGRLHN   LM  + K+ ++L+R    A    L VLDATTGQNA+ Q +
Sbjct: 183 SRKADVLICDTAGRLHNKKNLMNELSKINKILEREYGDASKETLLVLDATTGQNAVIQAK 242

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F +     G+I+TK+DGTA+GG +I I     IPV  +GVGEGI DL+ F +++F   +
Sbjct: 243 EFMSACPIDGIILTKLDGTAKGGVVISIKDQLDIPVKLIGVGEGIEDLQEFNSEEFVEAL 302

Query: 311 T 311
            
Sbjct: 303 F 303


>gi|225442910|ref|XP_002264159.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 495

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 139/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            +     +   +  + ++  +D+ V  E    +   L++SD+   + + +   +      
Sbjct: 3   LSELGGSISRALQQMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNIKKLVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            D++       + +      + KML P  KP       +  V++ VG+ G GKTT   K 
Sbjct: 63  DDLAAGHNKRKIIQQAIFQELCKMLDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + 
Sbjct: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L   + ++           P  V+ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEA------TRPDLVIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F  K F + + 
Sbjct: 236 FRQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|15679321|ref|NP_276438.1| signal recognition particle protein Srp54 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|3334341|sp|O27376|SRP54_METTH RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|2622427|gb|AAB85799.1| signal recognition particle protein SRP54 [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 442

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L + +  +     +D+ V  E    ++  LI+SD+ + +   + + +  +   
Sbjct: 2   LGNLGRSLSKTMKKLAGMTIVDEEVVREVIKDIQRALIQSDVNIKLVFNLSKSIEERALN 61

Query: 77  KD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++        + ++  V + + K+L   S     D   +P+ IL +G+ G GKTT IGKL
Sbjct: 62  EEPPKGITPKEHIISIVYDEMVKLLGEKSHELVID--DKPYRILFLGLQGSGKTTTIGKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +   G  V +   DT+R AA++QLK + +             DA  LA +    A+ 
Sbjct: 120 ARYLRKKGFTVGVVCTDTWRPAALEQLKQYTEGQDVSIYGDPQNRDALDLAEKGL--ARF 177

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K DV+I DTAGR      L+  + ++  +++      PH  + V+D T GQ A  Q   
Sbjct: 178 QKKDVIIFDTAGRHKEEKDLLREMEELSAIVE------PHEAILVIDGTIGQQAREQALA 231

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG+A+GGG +  V     P+ F+G GE I+DLE F  + F + + 
Sbjct: 232 FRKATDIGSIIVTKLDGSAKGGGALSAVAEIGAPIKFIGTGERIDDLEVFDPERFISRLL 291

Query: 312 GCLDY 316
           G  D 
Sbjct: 292 GMGDL 296


>gi|327461018|gb|EGF07351.1| cell division protein FtsY [Streptococcus sanguinis SK1057]
          Length = 504

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 121/310 (39%), Positives = 174/310 (56%), Gaps = 4/310 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           K+  E  +   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA
Sbjct: 192 KIPQEESTQ-EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVA 250

Query: 64  QKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             + EEL  +   ++      L    + +L+             +F +   V+L VGVNG
Sbjct: 251 SSLTEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFDEKINFQNGLTVMLFVGVNG 310

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++
Sbjct: 311 VGKTTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASV 370

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+  ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+T
Sbjct: 371 VYDGMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDAST 430

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F
Sbjct: 431 GQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEF 490

Query: 302 VAKDFSAVIT 311
            +++F   + 
Sbjct: 491 NSENFMKGLL 500


>gi|297526052|ref|YP_003668076.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Staphylothermus hellenicus DSM 12710]
 gi|297254968|gb|ADI31177.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Staphylothermus hellenicus DSM 12710]
          Length = 444

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/290 (28%), Positives = 136/290 (46%), Gaps = 15/290 (5%)

Query: 35  IISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLY 86
           +      +  V+E + DL   LI++D+ V +  ++ +++  +   ++        +  + 
Sbjct: 17  LSGKGDYERAVKEFIRDLQKELIKADVNVRLVLELTKKIRERALEEEPPPGITRREWFIN 76

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            V E + K      +  +     +P V+L+VG+ G GKTT   KL+      G +V L  
Sbjct: 77  IVYEELSKFFGG-DRKPDIKPKKKPWVMLLVGLQGSGKTTTAAKLAYYYKLEGYRVGLVT 135

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DT+R AA DQLK   ++            DA  +A    +   ++  D++I+DTAGR H
Sbjct: 136 ADTYRPAAYDQLKQLGEQIGVPVYGEPNNKDAVEIARRGVEYFVSRGFDIVIVDTAGRHH 195

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
               L+  + ++   +K      P  V+ V+DA  GQ A    + FH       +I+TK+
Sbjct: 196 REEDLLKEMREIAENIK------PDEVVLVIDAAIGQQAHNLAKKFHTATPIGSIIVTKL 249

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           DGTA+GGG +  V      + F+G GE I++LE F    F A I G  D 
Sbjct: 250 DGTAKGGGALSAVAVTGATIKFIGTGEKIDELEVFRPPRFVARILGIGDL 299


>gi|257461472|ref|ZP_05626568.1| signal recognition particle-docking protein FtsY [Campylobacter
           gracilis RM3268]
 gi|257441195|gb|EEV16342.1| signal recognition particle-docking protein FtsY [Campylobacter
           gracilis RM3268]
          Length = 287

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 98/298 (32%), Positives = 156/298 (52%), Gaps = 17/298 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
                 KG + T       I  +  ++  D   +E LE++L+ +D+G  + ++I+E+L  
Sbjct: 1   MFEFFKKGLSKT-------IDAMRGAKSEDKISKEILEEMLLEADVGYELVEEILEKLPA 53

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K+            D+  ++                 +P V L++GVNG GKTT   KL+
Sbjct: 54  KKLVAK-------DDLKGVLKNY---FDYEIAKAADEKPFVELIIGVNGAGKTTTTAKLA 103

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
               ++G  V+L A DTFR+ A++QLK WA   +   V +  G D AA+A++    A AK
Sbjct: 104 NLYKNSGQSVILGACDTFRAGAVEQLKKWAQILNLPIVATAQGHDPAAVAFDTVSSASAK 163

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +D ++IDTAGRL N   L A + K++R+  R    APH  + VLDAT G +++ Q   F
Sbjct: 164 NIDRVLIDTAGRLQNQKNLAAELEKIVRICDRAKSGAPHRKIIVLDATQGNHSVAQARAF 223

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           + +    G+I+TK+DGT +GG L  I    ++P+ F+GVGE + DL  F +  F   +
Sbjct: 224 NEIVRLDGIIITKLDGTPKGGALFAIARELRLPILFVGVGERMEDLAEFNSDQFVDTL 281


>gi|146304394|ref|YP_001191710.1| signal recognition particle-docking protein FtsY [Metallosphaera
           sedula DSM 5348]
 gi|145702644|gb|ABP95786.1| signal recognition particle-docking protein FtsY [Metallosphaera
           sedula DSM 5348]
          Length = 373

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/295 (30%), Positives = 151/295 (51%), Gaps = 19/295 (6%)

Query: 30  EGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
            G       R + +     + EEL   L+  D+ + V  KI+E+L      + VS +  +
Sbjct: 84  SGFFSFFKYREIKEEDISDLIEELRIELLEDDVSLEVTDKILEDLKNTLVGQKVSRRENI 143

Query: 86  YDV-SELIHKMLMPLSKP--------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            ++  E + K L  + +              S +P+VI+  GVNGVGKTT I K +  + 
Sbjct: 144 EELIQESLKKSLREILRKNYRERDMIETIKSSKKPYVIVFFGVNGVGKTTTIAKFAMLLR 203

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             GL V++AA DTFR+AA +QL   A +     V  + G D A++A++A + A+++ +DV
Sbjct: 204 KNGLSVIIAASDTFRAAAQEQLAYHATKLEVPLVKGKYGGDPASVAFDAIQSAKSRGIDV 263

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +++DTAGR+H +  L   + +++RV K      P   + VLD+  G +AL+Q E F    
Sbjct: 264 VLVDTAGRMHTDKDLTEELKRVVRVAK------PDLKILVLDSLAGNDALQQAEYFEKNV 317

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G   +I+TK+D  A+GG  + +      PV +LG+G+    L  F    F+  + 
Sbjct: 318 GYDAVILTKVDADAKGGVALSLAYKLGKPVIYLGMGQDYESLIKFDPDWFADRLL 372


>gi|238063292|ref|ZP_04608001.1| signal recognition particle-docking protein ftsY [Micromonospora
           sp. ATCC 39149]
 gi|237885103|gb|EEP73931.1| signal recognition particle-docking protein ftsY [Micromonospora
           sp. ATCC 39149]
          Length = 395

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 112/310 (36%), Positives = 168/310 (54%), Gaps = 5/310 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           +   +   + +L    + +     +G+  ++S   LD+   EE+ED LI +D+G+   + 
Sbjct: 80  MPEPTAGRLVRLRTRLSRSQNAFGKGLLGLLSRDHLDEDTWEEIEDSLITADVGIDATRD 139

Query: 66  IVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPF-NWDFSHRPHVILVVGVNGV 122
           IV+ L  +           L  +  +EL+  +   L +          P V+LVVGVNG 
Sbjct: 140 IVDRLRERTRVLGTRSATELRALLAAELVDALDPALDRSLRTAPKDGVPAVVLVVGVNGA 199

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GK+++ +   G  V+L A DTFR+AA DQL+ W  R  A+ V     +D A++A
Sbjct: 200 GKTTTCGKIARVLVADGRSVLLGAADTFRAAAADQLQTWGGRVGAETVRGPEAADPASVA 259

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K+     VD ++IDTAGRL N   LM  +GK+ RV+ +  P      L VLDATTG
Sbjct: 260 FDAVKRGIDTGVDTVLIDTAGRLQNKVGLMDELGKVKRVVSKHGP--IDETLLVLDATTG 317

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN L Q  +F  V   TG+++TK+DGTA+GG +I +     IPV  +G+GEG +DL PF 
Sbjct: 318 QNGLEQARVFTEVVNVTGVVLTKLDGTAKGGIVIAVQRKLGIPVKLVGLGEGKDDLAPFD 377

Query: 303 AKDFSAVITG 312
              F   + G
Sbjct: 378 PAQFVDALLG 387


>gi|237802459|ref|YP_002887653.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis B/Jali20/OT]
 gi|255310826|ref|ZP_05353396.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis 6276]
 gi|255317126|ref|ZP_05358372.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis 6276s]
 gi|231273693|emb|CAX10471.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis B/Jali20/OT]
 gi|296435541|gb|ADH17715.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis G/9768]
 gi|296436465|gb|ADH18635.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis G/11222]
 gi|296437401|gb|ADH19562.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis G/11074]
 gi|297139900|gb|ADH96658.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis G/9301]
 gi|297748156|gb|ADI50702.1| signal recognition particle subunit Ffh/Srp54 [Chlamydia
           trachomatis D-EC]
 gi|297749036|gb|ADI51714.1| signal recognition particle subunit Ffh/Srp54 [Chlamydia
           trachomatis D-LC]
          Length = 448

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 20/305 (6%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           +S S KL    + + +++R+ +        E+   L+ +D+     +  + ++  K   +
Sbjct: 3   SSLSQKLSNIFSSLFTAKRVTEESISDSIREVRLALLDADVNYQAVKDFIAKVKQKVVGE 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q+ +  + E +   L   S+         P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVWKHVSPGQQFIKCLHEELSSSLA--SEQTAVSLRGCPAVILLCGLQGAGKTTTCAKLA 120

Query: 133 KKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
                     KV++A+ D  R +A++QL+    +T ADF   E G+D   +A EA + A+
Sbjct: 121 DYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGADFFRRE-GNDPVDMAAEAVQHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  D++++DTAGRLH +  LM  +  + RV       +P   L V++   GQ+A+   +
Sbjct: 180 SQGYDLVLVDTAGRLHVDDALMDELVAIARV------TSPCETLFVMNLAMGQDAVVTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG++++  DG AR G ++ +      P+ F G GE I DL PF A+  +  I
Sbjct: 234 AFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKFEGCGEKIKDLRPFNAQSMAERI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|307704940|ref|ZP_07641831.1| signal recognition particle-docking protein FtsY [Streptococcus
           mitis SK597]
 gi|307621554|gb|EFO00600.1| signal recognition particle-docking protein FtsY [Streptococcus
           mitis SK597]
          Length = 420

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 174/312 (55%), Gaps = 7/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           +      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA
Sbjct: 107 ETPQAEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVA 166

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVVGV 119
             + EEL  +   ++      L  V  +I K++    K  N+D    F     V+L VGV
Sbjct: 167 SNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDESIHFQDGLTVMLFVGV 224

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D A
Sbjct: 225 NGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPA 284

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA
Sbjct: 285 SVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDA 344

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+ 
Sbjct: 345 STGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIG 404

Query: 300 PFVAKDFSAVIT 311
            F +++F   + 
Sbjct: 405 EFNSENFMKGLL 416


>gi|303244260|ref|ZP_07330597.1| GTP-binding signal recognition particle SRP54 G- domain
           [Methanothermococcus okinawensis IH1]
 gi|302485387|gb|EFL48314.1| GTP-binding signal recognition particle SRP54 G- domain
           [Methanothermococcus okinawensis IH1]
          Length = 456

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 150/307 (48%), Gaps = 20/307 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  +   +  I       ++L   V ++++  LI++D+ V +  K+ +E+  +   
Sbjct: 8   LDKLGQNISSALNKIKNATFVDKKLIKEVIKDIQKALIQADVNVKLVFKMSKEIEKRAIN 67

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +D+       + ++  V E + K+L    +    +   + ++IL+VG+ G GKTT   KL
Sbjct: 68  EDIPKGLSKKEHIIKIVYEELVKLLGEEGQKLELN-PKKQNIILLVGIQGSGKTTSAAKL 126

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQAQ 190
           ++ +   GLK  L A D +R AA  QLK  A++        E  +     +A E  K  +
Sbjct: 127 ARYIQKRGLKPGLIAADIYRPAAYQQLKQLAEKIHVPLYGDETKTKTPMEIAKEGIKNLK 186

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K+DVLIIDTAGR    + L+  + ++  V+       P  ++ V+D T GQ A  Q +
Sbjct: 187 --KMDVLIIDTAGRHKEETGLLEEMKQIKDVVN------PDEIILVIDGTLGQQAKNQAK 238

Query: 251 MFHAVAGTTGLIM-TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            F    G  G I+ TK+DG+A+GGG +  V     P+ F+G GE ++DLEPF    F + 
Sbjct: 239 AFKDAVGEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGENVDDLEPFDPNKFISR 298

Query: 310 ITGCLDY 316
           + G  D 
Sbjct: 299 LLGMGDL 305


>gi|23465034|ref|NP_695637.1| FtsY signal recognition particle [Bifidobacterium longum NCC2705]
 gi|239622641|ref|ZP_04665672.1| FtsY signal recognition particle [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|322688369|ref|YP_004208103.1| signal recognition particle-docking protein [Bifidobacterium longum
           subsp. infantis 157F]
 gi|23325639|gb|AAN24273.1| FtsY signal recognition particle [Bifidobacterium longum NCC2705]
 gi|239514638|gb|EEQ54505.1| FtsY signal recognition particle [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|320459705|dbj|BAJ70325.1| signal recognition particle-docking protein [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 420

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 108/315 (34%), Positives = 172/315 (54%), Gaps = 7/315 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  +      S + +L    A +     + + DI++   L +   E++ED L+ +D+G  
Sbjct: 107 AKPETPESVGSRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGAD 166

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----RPHVILVV 117
            + ++V++L T       +    +    +     L+        +       +P VI++V
Sbjct: 167 ASAQLVDDLRTDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPGAAKPSVIIMV 226

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT  GKL++       +VM+ A DTFR+AA DQL+ W  R +   V S+  G+
Sbjct: 227 GVNGTGKTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGA 286

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL V
Sbjct: 287 DPASVAFEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLP--VDEVLLV 344

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q ++F    G TG++++K+DG+A+GG ++ +     +PV  +G+GEG +
Sbjct: 345 LDATTGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPD 404

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF  + F   I 
Sbjct: 405 DLAPFDPEGFVDGIL 419


>gi|317125424|ref|YP_004099536.1| signal recognition particle-docking protein FtsY [Intrasporangium
           calvum DSM 43043]
 gi|315589512|gb|ADU48809.1| signal recognition particle-docking protein FtsY [Intrasporangium
           calvum DSM 43043]
          Length = 423

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 117/315 (37%), Positives = 182/315 (57%), Gaps = 6/315 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +   +    +   +++L    A ++  L +G+  ++S  RLD+   E++ED LI SD+GV
Sbjct: 110 LPTLERPESARGRLQRLRARLARSNSALGKGLLGLLSRGRLDEEAWEDVEDTLIASDLGV 169

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSH-RPHVILVV 117
              ++++  L T+      + +  + +    +L+  +   + +         RP VILVV
Sbjct: 170 EATEELIASLRTRVKVDGTTDEATVREWLREDLLRLVQPDMDRRIASSRVGTRPAVILVV 229

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT +GKL++ +      V+L A DTFR+AA DQL  W  R     V S+  G+
Sbjct: 230 GVNGTGKTTTVGKLARVLVAEDRDVLLGAADTFRAAAADQLDTWGARVGVPTVRSDREGA 289

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+A++A K    ++VDV+IIDTAGRLHN   LM  +GK+ RV+++L       VL V
Sbjct: 290 DPAAVAFDAVKAGIEQEVDVVIIDTAGRLHNKVDLMNELGKVKRVIEKLSE--IDEVLLV 347

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN L+Q ++F      TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +
Sbjct: 348 LDATTGQNGLQQAKVFSEAVDVTGIVLTKLDGTAKGGIVVAVQRQLGVPVKLVGLGEGPD 407

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF   DF   + 
Sbjct: 408 DLAPFEPADFVDALL 422


>gi|327490292|gb|EGF22080.1| cell division protein FtsY [Streptococcus sanguinis SK1058]
          Length = 498

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 172/307 (56%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  +
Sbjct: 188 PQEESTQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVASSL 247

Query: 67  VEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            EEL  +   ++      L    + +L+             +F +   V+L VGVNGVGK
Sbjct: 248 TEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVNGVGK 307

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++ Y+
Sbjct: 308 TTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASVVYD 367

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQN
Sbjct: 368 GMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDASTGQN 427

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F ++
Sbjct: 428 ALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSE 487

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 488 NFMKGLL 494


>gi|317482722|ref|ZP_07941735.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           sp. 12_1_47BFAA]
 gi|322690389|ref|YP_004219959.1| signal recognition particle-docking protein [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|316915845|gb|EFV37254.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           sp. 12_1_47BFAA]
 gi|320455245|dbj|BAJ65867.1| signal recognition particle-docking protein [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 425

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 108/315 (34%), Positives = 172/315 (54%), Gaps = 7/315 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  +      S + +L    A +     + + DI++   L +   E++ED L+ +D+G  
Sbjct: 112 AKPETPESVGSRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGAD 171

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----RPHVILVV 117
            + ++V++L T       +    +    +     L+        +       +P VI++V
Sbjct: 172 ASAQLVDDLRTDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPGAAKPSVIIMV 231

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT  GKL++       +VM+ A DTFR+AA DQL+ W  R +   V S+  G+
Sbjct: 232 GVNGTGKTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGA 291

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL V
Sbjct: 292 DPASVAFEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLP--VDEVLLV 349

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q ++F    G TG++++K+DG+A+GG ++ +     +PV  +G+GEG +
Sbjct: 350 LDATTGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPD 409

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF  + F   I 
Sbjct: 410 DLAPFDPEGFVDGIL 424


>gi|15604743|ref|NP_219527.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis D/UW-3/CX]
 gi|3328415|gb|AAC67615.1| Signal Recognition Particle GTPase [Chlamydia trachomatis
           D/UW-3/CX]
          Length = 448

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 148/305 (48%), Gaps = 20/305 (6%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           +S S KL    + + +++R+ +        E+   L+ +D+     +  + ++  K   +
Sbjct: 3   SSLSQKLSNIFSSLFTAKRVTEESISDSIREVRLALLDADVNYQAVKDFIAKVKQKVVGE 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q+ +  + E +   L   S+         P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVWKHVSPGQQFIKCLHEELSSSLA--SEQTAVSLRGCPAVILLCGLQGAGKTTTCAKLA 120

Query: 133 KKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
                     KV++A+ D  R +A++QL+    +T ADF   E G+D   +A EA + A+
Sbjct: 121 DYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGADFFRRE-GNDPVDMAAEAVQHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  D++++DTAGRLH +  LM  +  + RV        P   L V++   GQ+A+   +
Sbjct: 180 SQGYDLVLVDTAGRLHVDDALMDELVAIARVTT------PCETLFVMNLAMGQDAVVTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG++++  DG AR G ++ +      P+ F G GE I DL PF A+  +  I
Sbjct: 234 AFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKFEGCGEKIKDLRPFNAQSMAERI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|332358675|gb|EGJ36498.1| cell division protein FtsY [Streptococcus sanguinis SK355]
          Length = 512

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 172/307 (56%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  +
Sbjct: 202 PQEESTQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVASSL 261

Query: 67  VEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            EEL  +   ++      L    + +L+             +F +   V+L VGVNGVGK
Sbjct: 262 TEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVNGVGK 321

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++ Y+
Sbjct: 322 TTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASVVYD 381

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQN
Sbjct: 382 GMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDASTGQN 441

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F ++
Sbjct: 442 ALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSE 501

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 502 NFMKGLL 508


>gi|330507723|ref|YP_004384151.1| signal sequence recognition 54 kDa protein [Methanosaeta concilii
           GP-6]
 gi|328928531|gb|AEB68333.1| Signal sequence recognition 54 kDa protein [Methanosaeta concilii
           GP-6]
          Length = 445

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/300 (28%), Positives = 144/300 (48%), Gaps = 14/300 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L+  +  I S+ ++D    D    E++  L+++D+ V +  ++   + ++   
Sbjct: 3   LDNLGGSLRNALKKIASANKIDKALVDEAVREIQRALLQADVNVKLVMQLSNTIKSRALD 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +  +      + V  ++++ L+ L      D   +   I++VG+ G GKTT   KL+   
Sbjct: 63  EKPAPGMNPREHVINIVYQELINLVGR-GADIPLKKQNIMLVGLQGSGKTTTAAKLATFF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              GL+  +   DTFR+ A DQLK   ++    F   +  +DA A+A    +  +  K D
Sbjct: 122 QRKGLRTAVICADTFRAGAYDQLKALCEKQGIFFYGEKGNTDAPAVARNGLEATK--KYD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           + I+DTAGR      L+  +  +  V+           L V+DA  GQ A  Q + F+  
Sbjct: 180 IRIVDTAGRHALEGDLIQEMKDIHAVVNA------DQKLLVMDAALGQQASEQAKAFNEA 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              TG+I+TK+DGTA+GGG +  V   K  V F+GVGE   DLE F A  F + + G  D
Sbjct: 234 VNITGVIITKLDGTAKGGGALSAVAETKTSVAFIGVGETPADLERFEADRFISRMLGMGD 293


>gi|315497247|ref|YP_004086051.1| signal recognition particle protein [Asticcacaulis excentricus CB
           48]
 gi|315415259|gb|ADU11900.1| signal recognition particle protein [Asticcacaulis excentricus CB
           48]
          Length = 520

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 151/309 (48%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L +  +    +L      ++S + +D+ +RE +   L+ +D+ + V ++ + +   
Sbjct: 1   MFDSLNERLSGLFDRLGG--RGVLSEKDVDEALRE-VRVALLDADVALPVVRQFMTKARE 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
               + +        +V+  V + +  ML           +  P VIL+ G+ G GKTT 
Sbjct: 58  LAAGEAIIKAVKPADQVVKIVYDGLIDMLGGEEPTPIDLAAVPPAVILMAGLQGSGKTTT 117

Query: 128 IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL+ ++      KVM+A+ DT R AA++QLK+  ++   D +    G  A  +   A 
Sbjct: 118 SAKLALRLSKFERKKVMMASLDTRRPAAMEQLKLLGEQVGVDVLPIIAGQSAVEITRRAL 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+ +  DVLI+DTAGR   +  LMA   ++  + K      P     V D+ TGQ+A+
Sbjct: 178 QSAKLQGYDVLILDTAGRTTLDEALMAEAAEIASLSK------PVETFLVADSLTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           R  E FHA    TGLI+T++DG  RGG ++ +     +P+ F G GE ++ L+ F A+  
Sbjct: 232 RTAEAFHARLPLTGLILTRVDGDGRGGAMLSMRAVTGLPIKFTGSGEKVDALDVFDARRI 291

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 292 AGRILGQGD 300


>gi|281491307|ref|YP_003353287.1| signal recognition particle docking protein FtsY [Lactococcus
           lactis subsp. lactis KF147]
 gi|281375048|gb|ADA64566.1| Signal recognition particle docking protein FtsY [Lactococcus
           lactis subsp. lactis KF147]
          Length = 459

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 121/300 (40%), Positives = 178/300 (59%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +K  +    T     +G  ++ ++ R +D+   EELE+ LI SD+GV +A ++ EEL  +
Sbjct: 156 KKYEQSLTLTRKTFSDGFNELFANFRTVDEEFFEELEETLIMSDVGVDLAMEVTEELRKE 215

Query: 74  RYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKL 131
               +      L  +  E I         P   D  +    V L VGVNGVGKTT IGKL
Sbjct: 216 AKLVNAKSTDDLRQLIIEKIVDKFDGEKLPTKLDIQTDGLSVFLFVGVNGVGKTTTIGKL 275

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +  + G KV+LAA DTFR+ AIDQL  W +R+  + V    GSD AA+ ++A  +A+A
Sbjct: 276 AARYKNEGKKVLLAAADTFRAGAIDQLVEWGNRSGVEVVTKPAGSDPAAVVFDALAKAKA 335

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+L++DTAGRL N   LM  + K+ +V+KR  P APH  +  LDATTGQNA++Q + 
Sbjct: 336 ENYDILLVDTAGRLQNKDNLMKELEKIGKVIKREIPDAPHETILALDATTGQNAIQQAKE 395

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F AV   TG+ +TK+DG+A+GG ++ IV + KIPV  +G+GE +NDL+ F  + F   + 
Sbjct: 396 FSAVTPITGIALTKLDGSAKGGIVLSIVQSLKIPVKLIGLGEKLNDLQDFDEEFFVRGLF 455


>gi|166154246|ref|YP_001654364.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis 434/Bu]
 gi|166155121|ref|YP_001653376.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|301335495|ref|ZP_07223739.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis L2tet1]
 gi|165930234|emb|CAP03719.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis 434/Bu]
 gi|165931109|emb|CAP06673.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 448

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 20/305 (6%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           +S S KL    + + +++R+ +        E+   L+ +D+     +  + ++  K   +
Sbjct: 3   SSLSQKLSNIFSSLFTAKRVTEEGISDSIREVRLALLDADVNYQAVKDFIAKVKQKVVGE 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q+ +  + E +   L   S+         P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVWKHVSPGQQFIKCLHEELSSSLA--SEQTAVSLRGCPAVILLCGLQGAGKTTTCAKLA 120

Query: 133 KKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
                     KV++A+ D  R +A++QL+    +T ADF   E G+D   +A EA + A+
Sbjct: 121 DYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGADFFRRE-GNDPVDMAAEAVQHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  D++++DTAGRLH +  LM  +  + RV       +P   L V++   GQ+A+   +
Sbjct: 180 SQGYDLVLVDTAGRLHVDDALMDELVAIARV------TSPCETLFVMNLAMGQDAVVTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG++++  DG AR G ++ +      P+ F G GE I DL PF A+  +  I
Sbjct: 234 AFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKFEGCGEKIKDLRPFNAQSMAERI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|1711510|sp|P49966|SR542_ARATH RecName: Full=Signal recognition particle 54 kDa protein 2;
           Short=SRP54
 gi|515679|gb|AAA66199.1| signal recognition particle 54 kDa subunit [Arabidopsis thaliana]
          Length = 495

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITD-----IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            A    ++   I       II  + L+D + E +   L++SD+   + +++   +     
Sbjct: 3   LAELGGRIMSAIQKMNNVTIIDEKALNDCLNE-ITRALLQSDVSFPLVKEMQTNIKKIVN 61

Query: 76  AKDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +D++       + E      + KML P    F    + +P V++ VG+ G GKTT   K
Sbjct: 62  LEDLAAGHNKRRIIEQAIFSELCKMLDPGKSAFAPKKA-KPRVVMFVGLQGSGKTTTCTK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            +      G K  L   DTFR+ A DQLK  A ++   +  S  GSD   +A E   + +
Sbjct: 121 YAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q  
Sbjct: 181 KENCDLIIVDTSGRHKQQASLFEEMRQISEATK------PDLVIFVMDSSIGQTAFEQAR 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F AK F + +
Sbjct: 235 AFKQTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRL 294

Query: 311 TGCLDY 316
            G  D 
Sbjct: 295 LGNGDM 300


>gi|284929430|ref|YP_003421952.1| signal recognition particle-docking protein FtsY [cyanobacterium
           UCYN-A]
 gi|284809874|gb|ADB95571.1| signal recognition particle-docking protein FtsY [cyanobacterium
           UCYN-A]
          Length = 435

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 106/316 (33%), Positives = 181/316 (57%), Gaps = 6/316 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             + +  + + W++ L KG + T   L   +  ++    L +    E+E +L+++DIG+ 
Sbjct: 118 KPEDITEDEIQWLKSLHKGLSKTRRGLLNQLKLVLGQGPLSENAILEIETILLQADIGIN 177

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRP---HVILVV 117
               IV  L  K   + +  ++ +  +  ++  +L  PL + ++ +   +    ++ L+ 
Sbjct: 178 ATDYIVTTLQNKLLEESLPSEKAIEYLKTILCDILNSPLKQAYDSEILVKKEVLNIWLLT 237

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-SEIGS 176
           GVNG GKTT IGKL+      G   ++AA DTFR+AA++Q+KIW ++T+   +  S   +
Sbjct: 238 GVNGAGKTTTIGKLAYLAQQCGHSCIIAAADTFRAAAVEQVKIWGEKTNTPIISNSGKNT 297

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH-SVLQ 235
           D AA+ Y+    AQA+ VD+L++DTAGRL N + LM  + K+ RV+ +   +  H   L 
Sbjct: 298 DPAAVVYDGLMAAQARNVDLLLVDTAGRLQNKTNLMEELAKIRRVIDKKAKNNVHIESLL 357

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DAT GQN LRQ E+F   A  TG+I+TK+DG+++GG  + I     +P+ F+GVGE +
Sbjct: 358 VIDATLGQNGLRQTELFSEAAHLTGVILTKLDGSSKGGIALAITQQFGLPIRFIGVGENM 417

Query: 296 NDLEPFVAKDFSAVIT 311
            DL+PF + +F   + 
Sbjct: 418 KDLKPFSSHEFVEALL 433


>gi|324991500|gb|EGC23433.1| cell division protein FtsY [Streptococcus sanguinis SK353]
          Length = 504

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 172/307 (56%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  +
Sbjct: 194 PQEESTQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVASSL 253

Query: 67  VEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            EEL  +   ++      L    + +L+             +F +   V+L VGVNGVGK
Sbjct: 254 TEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVNGVGK 313

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++ Y+
Sbjct: 314 TTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASVVYD 373

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQN
Sbjct: 374 GMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDASTGQN 433

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F ++
Sbjct: 434 ALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSE 493

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 494 NFMKGLL 500


>gi|332074854|gb|EGI85326.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae GA41301]
 gi|332200691|gb|EGJ14763.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae GA41317]
          Length = 401

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 175/314 (55%), Gaps = 7/314 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             +      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 86  EPEAPQTEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 145

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVV 117
           VA  + EEL  +   ++     VL  V  +I K++    K  ++D    F     V+L V
Sbjct: 146 VASNLTEELRYEAKLENAKKPDVLRRV--IIEKLVELYEKDGSYDESIHFQDNLTVMLFV 203

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 204 GVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKAD 263

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     L
Sbjct: 264 PASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLAL 323

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D
Sbjct: 324 DASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDD 383

Query: 298 LEPFVAKDFSAVIT 311
           +  F +++F   + 
Sbjct: 384 IGEFNSENFMKGLL 397


>gi|324993860|gb|EGC25779.1| cell division protein FtsY [Streptococcus sanguinis SK405]
 gi|324994819|gb|EGC26732.1| cell division protein FtsY [Streptococcus sanguinis SK678]
 gi|325687260|gb|EGD29282.1| cell division protein FtsY [Streptococcus sanguinis SK72]
 gi|327463124|gb|EGF09445.1| cell division protein FtsY [Streptococcus sanguinis SK1]
          Length = 504

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 172/307 (56%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  +
Sbjct: 194 PQEESTQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVASSL 253

Query: 67  VEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            EEL  +   ++      L    + +L+             +F +   V+L VGVNGVGK
Sbjct: 254 TEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVNGVGK 313

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++ Y+
Sbjct: 314 TTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASVVYD 373

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQN
Sbjct: 374 GMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDASTGQN 433

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F ++
Sbjct: 434 ALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSE 493

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 494 NFMKGLL 500


>gi|315653378|ref|ZP_07906300.1| cell division protein FtsY [Lactobacillus iners ATCC 55195]
 gi|315489303|gb|EFU78943.1| cell division protein FtsY [Lactobacillus iners ATCC 55195]
          Length = 345

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 172/314 (54%), Gaps = 11/314 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
            + ++  +         +G   TS  L E +   ++  R +D+   ++LEDLLI +D+G 
Sbjct: 27  KDSEITKKDNDIQATYDRGLKKTSNSLGEKLNSFLAQFRTIDEDFFDDLEDLLIEADVGY 86

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHV 113
             A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S         P V
Sbjct: 87  ETAEMLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILKTGDMPAV 143

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R     +   
Sbjct: 144 FLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVDVQVISGN 203

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  P  P  +
Sbjct: 204 TNADPSSVVYEGLECAVKNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKIPDQPQEI 263

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+D +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE
Sbjct: 264 LLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPVKLVGLGE 323

Query: 294 GINDLEPFVAKDFS 307
              DL  F A+ F+
Sbjct: 324 KAEDLAEFDAEKFA 337


>gi|15834914|ref|NP_296673.1| signal recognition particle [Chlamydia muridarum Nigg]
 gi|270285084|ref|ZP_06194478.1| signal recognition particle [Chlamydia muridarum Nigg]
 gi|270289107|ref|ZP_06195409.1| signal recognition particle [Chlamydia muridarum Weiss]
 gi|301336480|ref|ZP_07224682.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia muridarum
           MopnTet14]
 gi|7190336|gb|AAF39161.1| signal recognition particle [Chlamydia muridarum Nigg]
          Length = 448

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 150/304 (49%), Gaps = 20/304 (6%)

Query: 23  STSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           S S KL    + + +++R+ +        E+   L+ +D+     +  + ++  K   ++
Sbjct: 4   SLSQKLSSIFSSLFTAKRVTEESISDSIREIRLALLDADVNYQAVKDFISKVKQKVIGEE 63

Query: 79  V-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           V       Q+ +  + E +  +L   S+  +     RP V+L  G+ G GKTT   KL+ 
Sbjct: 64  VWKHVSPGQQFVKCLHEELAALLS--SQQASLLLQGRPAVVLFCGLQGAGKTTTCAKLAD 121

Query: 134 KMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            +       KV++A+ D  R +A+DQL+    +T ADF   + G +  ++A EA + A+ 
Sbjct: 122 YVLREKKAKKVLVASCDLKRFSAVDQLEGLIKQTGADFFRKK-GENPVSMASEAVRYAKD 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D+LI+DTAGRLH +  LM  +  + RV        P  +L V++   GQ+A+   + 
Sbjct: 181 QGYDLLIVDTAGRLHVDDALMDELVAIARVTN------PSEILFVMNLAMGQDAVTTAKA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TG++++  DG AR G ++ +      P+ F G GE I DL PF A+  +  I 
Sbjct: 235 FDERLGLTGIVVSMADGDARAGAVLSVKSLLGRPIKFEGCGEKIKDLRPFNAQSMAERIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|219684207|ref|ZP_03539151.1| signal recognition particle protein [Borrelia garinii PBr]
 gi|219672196|gb|EED29249.1| signal recognition particle protein [Borrelia garinii PBr]
          Length = 444

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S     K  I  +     ++D       E +++ L+ +D+ + V ++ +  ++ +   
Sbjct: 2   LESLGSNFKNFINYLSGKSTINDKNISEAIEIIKNSLVDADVNLRVVRRFLNSIIEESKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V        + +  V++ + K L   S   +    ++   IL++G+ G GKTT   KL
Sbjct: 62  VKVLRGIDPKSQFIKIVNDNLVKFLGGKSYELSLHPVNKQSYILMLGLQGSGKTTTCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S ++     KV+L A DTFR+AA++QLKI   +            D   +   + + A++
Sbjct: 122 SLRLKKENRKVLLVAADTFRAAAVEQLKILGSQIGVPVFSIAGEKDPIKIVKASMEFAES 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D +I+DT GRL   S+L+  I K+  +LK      P   + V+D+  GQ A+   + 
Sbjct: 182 EFFDSVIVDTRGRLEVESLLVEEIKKIKDILK------PTETILVVDSMMGQVAVNIAKE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I +K D   RGG ++       +P+ F+GVGE + DL+ F  +  ++ I 
Sbjct: 236 FNENVGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKFIGVGERVEDLDSFYPERIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|308462623|ref|XP_003093593.1| hypothetical protein CRE_02627 [Caenorhabditis remanei]
 gi|308249610|gb|EFO93562.1| hypothetical protein CRE_02627 [Caenorhabditis remanei]
          Length = 496

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 136/306 (44%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELL----- 71
            A    K++  I  +  +  +++     + +E+   LI SD+ + + +++ + +      
Sbjct: 3   LADLGRKIRNAIGKLGQNTVINEEELDLMLKEVCTALIESDVHIRLVKQLKDNVKKAINF 62

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +        + +   V   + K++ P    F      R +V + VG+ G GKTT   K+
Sbjct: 63  EEIVGGANKRRYIQKTVFNELLKLVDPGVTAFQPTKGKR-NVFMFVGLQGSGKTTTCTKM 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++   
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYSEIDPVKIAAEGVEKFTK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR    + L   + ++   +       P +V+ V+DA+ GQ    Q   
Sbjct: 182 EGFEIIIVDTSGRHKQEASLFEEMLQVSNAVT------PDNVVFVMDASIGQACEAQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+D  A+GGG +  V   K PV F+G GE I+D E F  K F   + 
Sbjct: 236 FSQTVDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGEHIDDFEIFKPKSFVQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDIA 301


>gi|282855440|ref|ZP_06264761.1| signal recognition particle-docking protein FtsY [Pyramidobacter
           piscolens W5455]
 gi|282586736|gb|EFB91983.1| signal recognition particle-docking protein FtsY [Pyramidobacter
           piscolens W5455]
          Length = 309

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 170/304 (55%), Gaps = 3/304 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S+  KL +       +    IT +     +D+    +LED+LI  D+G+  A+ ++ E+
Sbjct: 1   MSFFGKLKEKLDGVRHRWSANITRLFGG-TIDEDFWLDLEDVLIAGDVGLETAEALLGEM 59

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                 +    + +L      + K L  +           +    IL+VGVNG GKTT  
Sbjct: 60  RAYHAQRRCDGKELLRHFKSELVKRLGGVPRMGAPLLSGENGLAAILMVGVNGSGKTTTT 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+     +G KV++AA DTFR+AAI+QL++W +++    +  + G D+AA+ ++A   
Sbjct: 120 GKLAWLYKKSGKKVIVAAADTFRAAAIEQLQVWGEKSGIRVIAQKQGGDSAAVVFDALSA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A++   DVLI+DTAGRL +   LM  +GK+ RV++R         + VLD+  GQNA RQ
Sbjct: 180 ARSSGADVLIVDTAGRLQSKHNLMEELGKIYRVIEREVGKERMESVLVLDSVIGQNAFRQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E+F+ VA  TG+I+ K D TA+GG ++PI    ++P+ ++G+GE   DL+ F A++F  
Sbjct: 240 AEVFNEVAPLTGVILAKYDNTAKGGIVLPIADKLRLPIRYIGLGEAPEDLKLFNAEEFVE 299

Query: 309 VITG 312
            + G
Sbjct: 300 ALFG 303


>gi|259501535|ref|ZP_05744437.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners DSM 13335]
 gi|259167053|gb|EEW51548.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners DSM 13335]
          Length = 345

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 172/314 (54%), Gaps = 11/314 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
            + ++  +         +G   TS  L E +   ++  R +D+   ++LEDLLI +D+G 
Sbjct: 27  KDSEITKKDNDIQATYDRGLKKTSNSLGEKLNSFLAQFRTIDEDFFDDLEDLLIEADVGY 86

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHV 113
             A+ + +EL  +   K+V   ++L +V   I + L+ L +  N   S         P V
Sbjct: 87  ETAELLTDELRNEAKLKNVKDSKLLKNV---IVEKLVELYEQNNTKDSKLILKTGDMPAV 143

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            L VGVNG GKTT IGKL+KK+ DAG  VML A DTFR+ A++QLK W  R     +   
Sbjct: 144 FLFVGVNGAGKTTTIGKLAKKLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVDVQVISGN 203

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +D +++ YE  + A    +D L++DTAGRL N   LM  + K+ R + R  P  P  +
Sbjct: 204 TNADPSSVVYEGLECAVNNHIDYLLVDTAGRLQNKVNLMNELDKINRTIHRKIPDQPQEI 263

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+D +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE
Sbjct: 264 LLVIDGSTGQNALNQAKEFDKTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPVKLVGLGE 323

Query: 294 GINDLEPFVAKDFS 307
              DL  F A+ F+
Sbjct: 324 KAEDLAEFDAEKFA 337


>gi|325694854|gb|EGD36759.1| cell division protein FtsY [Streptococcus sanguinis SK150]
          Length = 504

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 171/307 (55%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  +
Sbjct: 194 PQEESTQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVASSL 253

Query: 67  VEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            EEL  +   ++      L    + +L+             +F +   V+L VGVNGVGK
Sbjct: 254 TEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVNGVGK 313

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++ Y+
Sbjct: 314 TTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASVVYD 373

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++A A+KVDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQN
Sbjct: 374 GMERALAEKVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDASTGQN 433

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F ++
Sbjct: 434 ALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSE 493

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 494 NFMKGLL 500


>gi|312601025|gb|ADQ90280.1| Signal recognition particle protein [Mycoplasma hyopneumoniae 168]
          Length = 440

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/318 (27%), Positives = 150/318 (47%), Gaps = 27/318 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               + +++  +  +  S  +++     +  E+   L+ +D+ + V +  + ++ T+   
Sbjct: 2   LEFLTNRIQSSLKKLQKSITINESDLVEITREIRLALLEADVNLLVVKDFISKVKTQVLK 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++      Q  L  + + + ++L   SK  N  F+  P +I++VG+ G GKTT   KL
Sbjct: 62  QGLTSKLNPQQEFLKILHQNLVEILGINSKSIN--FNKTPTIIMLVGLQGSGKTTTAAKL 119

Query: 132 SKKMSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +          K++L A DT+R AAIDQLK    +   +    E       +A EA   +
Sbjct: 120 AVFARQKKLTKKILLVACDTYRPAAIDQLKQLGKQVLIEVFYVE--KSPVQIAKEALIYS 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D++I DTAGRL  N  LM  + ++   +K      P  +L +LDA +GQ+ +   
Sbjct: 178 KNNDFDLVIFDTAGRLSINEELMNELSEIKENIK------PDQILFILDALSGQDIINVA 231

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F+     TG I+TK+D  AR G  + I    KIPV  +G GE I+ LE F     +  
Sbjct: 232 QIFNQKINLTGAIITKLDSNARAGAALSITHLLKIPVLLVGTGEKISALELFHPNRMADR 291

Query: 310 ITGCLD------YGEEKI 321
           I G  D        EE I
Sbjct: 292 ILGMGDVRSLLEQAEENI 309


>gi|86742277|ref|YP_482677.1| signal recognition particle-docking protein FtsY [Frankia sp. CcI3]
 gi|86569139|gb|ABD12948.1| signal recognition particle-docking protein FtsY [Frankia sp. CcI3]
          Length = 414

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 105/275 (38%), Positives = 157/275 (57%), Gaps = 4/275 (1%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLM 97
            LD+   E++E  L+ +D+GV    ++V  L  +           + ++   EL+ ++  
Sbjct: 139 NLDEDAWEDVEATLLLADVGVTATTELVAALRERTKVLGARTPADVREMLRDELLAQIGT 198

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              +        RP V+LVVGVNG GKTT  GK+++ +   G  V+L A DTFR+AA DQ
Sbjct: 199 TTDRSLRTTAPDRPAVVLVVGVNGTGKTTTCGKIARLLVADGRTVVLGAADTFRAAAADQ 258

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+ W +R  A  V    G D A++A++A +Q     VD ++IDTAGRLH  + LM  + K
Sbjct: 259 LQTWGERVGAITVRGAEGGDPASVAFDAVRQGTQSGVDTVLIDTAGRLHTKAGLMDELAK 318

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RV+ +  P     VL VLDATTGQNAL Q ++F      TG+++TK+DGTA+GG +I 
Sbjct: 319 IKRVVGKHGP--VDEVLLVLDATTGQNALVQAQVFTQAVDLTGVVLTKLDGTAKGGIVIA 376

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 377 VQRELGMPVKLIGLGEGPDDLAPFEPEAFVDALLG 411


>gi|72080399|ref|YP_287457.1| signal recognition particle protein [Mycoplasma hyopneumoniae 7448]
 gi|71913523|gb|AAZ53434.1| signal recognition particle protein [Mycoplasma hyopneumoniae 7448]
          Length = 440

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/318 (27%), Positives = 150/318 (47%), Gaps = 27/318 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               + +++  +  +  S  +++     +  E+   L+ +D+ + V +  + ++ T+   
Sbjct: 2   LEFLTNRIQSSLKKLQKSITINESDLVEITREIRLALLEADVNLLVVKDFISKVKTQVLK 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++      Q  L  + + + ++L   SK  N  F+  P +I++VG+ G GKTT   KL
Sbjct: 62  QGLTSKLNPQQEFLKILHQNLVEILGINSKSIN--FNKTPTIIMLVGLQGSGKTTTAAKL 119

Query: 132 SKKMSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +          K++L A DT+R AAIDQLK    +   +    E       +A EA   +
Sbjct: 120 AVFARQKKLAKKILLVACDTYRPAAIDQLKQLGKQVLIEVFYVE--KSPVQIAKEALIYS 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D++I DTAGRL  N  LM  + ++   +K      P  +L +LDA +GQ+ +   
Sbjct: 178 KNNDFDLVIFDTAGRLSINEELMNELSEIKENIK------PDQILFILDALSGQDIINVA 231

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F+     TG I+TK+D  AR G  + I    KIPV  +G GE I+ LE F     +  
Sbjct: 232 QIFNQKINLTGAIITKLDSNARAGAALSITHLLKIPVLLVGTGEKISALELFHPNRMADR 291

Query: 310 ITGCLD------YGEEKI 321
           I G  D        EE I
Sbjct: 292 ILGMGDVRSLLEQAEENI 309


>gi|332073582|gb|EGI84061.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae GA17570]
          Length = 378

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 117/312 (37%), Positives = 173/312 (55%), Gaps = 7/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           +      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA
Sbjct: 65  ERPQAEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVA 124

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVVGV 119
             + EEL  +   ++      L  V  +I K++    K  ++D    F     V+L VGV
Sbjct: 125 SNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGSYDESIHFQDNLTVMLFVGV 182

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V     +D A
Sbjct: 183 NGVGKTTSIGKLAHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPA 242

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA
Sbjct: 243 SVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDA 302

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+ 
Sbjct: 303 STGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIG 362

Query: 300 PFVAKDFSAVIT 311
            F +++F   + 
Sbjct: 363 EFNSENFMKGLL 374


>gi|118617610|ref|YP_905942.1| cell division protein FtsY [Mycobacterium ulcerans Agy99]
 gi|118569720|gb|ABL04471.1| cell division protein FtsY [Mycobacterium ulcerans Agy99]
          Length = 455

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 171/308 (55%), Gaps = 5/308 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
                 + +L    A +   L   +  +I    LD+   +++ED L+ +D+G  V + +V
Sbjct: 150 EPPEGRLERLRGRLAKSQNALGRSVLGLIGGGDLDEDSWQDVEDTLLVADLGPVVTEAVV 209

Query: 68  EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGK 124
            +L ++  + +V  +     V  +++ K L P          H   P V+LVVGVNG GK
Sbjct: 210 SQLRSRLASGNVRSEDDARAVLRDVLIKALQPDMDRSIRALPHPDHPSVLLVVGVNGTGK 269

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT +GKL++ +   G +V+L A DTFR+AA  QL+ WA R  A+ V    G+D A++A++
Sbjct: 270 TTTVGKLARVLVADGRRVVLGAADTFRAAAAVQLQTWAARVGAEVVSGAEGADPASVAFD 329

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A  +  A   DV++IDTAGRLH    LM  +GK+ R++ R    A   VL VLDAT GQN
Sbjct: 330 AVDKGVAAGADVILIDTAGRLHTKVGLMDELGKVKRLVTRR--AAVDEVLLVLDATIGQN 387

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q ++F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF   
Sbjct: 388 GLAQAKVFAEVVDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPV 447

Query: 305 DFSAVITG 312
            F   + G
Sbjct: 448 AFVDALLG 455


>gi|157164288|ref|YP_001466926.1| signal recognition particle-docking protein FtsY [Campylobacter
           concisus 13826]
 gi|112799965|gb|EAT97309.1| signal recognition particle-docking protein FtsY [Campylobacter
           concisus 13826]
          Length = 288

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 95/300 (31%), Positives = 164/300 (54%), Gaps = 26/300 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----L 71
           L +GF  T       I+    S+++D   +E LE++L+ +D+   + ++I+  L     +
Sbjct: 5   LKRGFEKT----FGAISSAKKSKKID---KESLEEILLEADVAYEIVEEILYYLPPQDEV 57

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++   + V     +Y+   +I                 +P V L++GVNG GKTT I KL
Sbjct: 58  SRADLRRVMSSYFIYENERVIE--------------PDKPFVDLILGVNGAGKTTTIAKL 103

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +    + G  V+L A DTFR+ AI+QL+ W+ R +   V ++ G D +A+AY+    A A
Sbjct: 104 ANLYKNNGKSVILGACDTFRAGAIEQLRQWSIRLNVPIVATQQGHDPSAVAYDTISSALA 163

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D +I+DTAGRL N + L   + K++R+ K+    APH  + +LD T G   + Q + 
Sbjct: 164 KGIDRVILDTAGRLQNQTNLANELDKIVRISKKAYEKAPHRKILILDGTQGNAGVAQAKA 223

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ +    G+I+TK+DGTA+GG L  +    ++P++++GVGE ++D+  F   +F   + 
Sbjct: 224 FNEIVSLDGVIITKLDGTAKGGALFGVARELELPIFYIGVGESMDDIIKFNPDEFLDELM 283


>gi|162456823|ref|YP_001619190.1| signal recognition particle protein [Sorangium cellulosum 'So ce
           56']
 gi|161167405|emb|CAN98710.1| signal recognition particle protein [Sorangium cellulosum 'So ce
           56']
          Length = 546

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/317 (27%), Positives = 143/317 (45%), Gaps = 25/317 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT+GF     +L  G+T++ ++  +D  +RE +   L+ +D+ + V +  +  +  
Sbjct: 1   MFDTLTRGFRQARNRL-AGLTEL-TAGNIDAALRE-VRLSLLEADVEIGVVKAFLARVKE 57

Query: 73  KRYAKDVSVQ--------------RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
               + +  +                +    + +  M+        W     P  I++VG
Sbjct: 58  AAVGRTLETRVKHAGEVHQVSASDHFIKICHDELEAMMTHEGDEIAW-ADSGPTGIMMVG 116

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT   KLS+ +   G K +L A D  R AA++QLK+  +           G   
Sbjct: 117 LQGSGKTTSCAKLSRYLEKQGKKPLLVAADMQRPAAVEQLKVLGESLKIPVFNI-PGESP 175

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            A+   A  +A+    DV+I DTAGRL  +  LM  + ++       D   P +V  V+D
Sbjct: 176 VAICAAARGEAKRLGRDVIIYDTAGRLAIDEPLMQELAQIK------DATKPENVFLVVD 229

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A++    F+      G+++TK+DG ARGG  + I      PV F G+GE  +  
Sbjct: 230 AMIGQDAVKTARGFNERLSIGGVVLTKLDGDARGGAALSIKEVTGAPVLFTGIGETTDKF 289

Query: 299 EPFVAKDFSAVITGCLD 315
           EPF A   ++ I G  D
Sbjct: 290 EPFRADGMASRILGMGD 306


>gi|149246331|ref|XP_001527635.1| signal recognition particle 54 kDa protein [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146447589|gb|EDK41977.1| signal recognition particle 54 kDa protein [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 563

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/320 (27%), Positives = 141/320 (44%), Gaps = 31/320 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKR----Y 75
            A    +L+  ++ + S    +   + +++   L+ SDI V +  K+   +  K      
Sbjct: 3   LADLGERLRGALSSVESGSEDEIQAMIKDICTALLESDINVKLVAKLRGNIREKIELEGV 62

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP--------------------HVIL 115
            K+ S Q     + ++I   L  L          +                     HVI+
Sbjct: 63  LKEQSSQNKRKKLQKIIFDELCALVDSHTEPPKPKKLSSTTKTINGKKVRVSKESSHVIM 122

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A + +  +  S + 
Sbjct: 123 FVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSYLE 182

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D   +AYE  ++ + +K D++I+DT+GR      L   + ++   ++      P   + 
Sbjct: 183 PDPVKIAYEGVQKFKHEKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ------PTQTIM 236

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+D + GQ A  Q   F   A    +I+TKMDG A+GGG I  V   K P+ F+G GE +
Sbjct: 237 VMDGSIGQAAESQARAFKESADFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHV 296

Query: 296 NDLEPFVAKDFSAVITGCLD 315
            DLE F    F + + G  D
Sbjct: 297 GDLEIFKPTTFVSKLLGIGD 316


>gi|327470655|gb|EGF16111.1| cell division protein FtsY [Streptococcus sanguinis SK330]
          Length = 512

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 172/307 (56%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  +
Sbjct: 202 PQEESTQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVASSL 261

Query: 67  VEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            EEL  +   ++      L    + +L+             +F +   V+L VGVNGVGK
Sbjct: 262 TEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVNGVGK 321

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++ Y+
Sbjct: 322 TTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASVVYD 381

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQN
Sbjct: 382 GMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDASTGQN 441

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F ++
Sbjct: 442 ALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSE 501

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 502 NFMKGLL 508


>gi|325696121|gb|EGD38012.1| cell division protein FtsY [Streptococcus sanguinis SK160]
          Length = 506

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 171/307 (55%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  +
Sbjct: 196 PQEESTQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVASSL 255

Query: 67  VEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            EEL  +   ++      L    + +L+             +F +   V+L VGVNGVGK
Sbjct: 256 TEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVNGVGK 315

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++ Y+
Sbjct: 316 TTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASVVYD 375

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++A A+KVDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQN
Sbjct: 376 GMERALAEKVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDASTGQN 435

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F ++
Sbjct: 436 ALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSE 495

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 496 NFMKGLL 502


>gi|291517568|emb|CBK71184.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           longum subsp. longum F8]
          Length = 425

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 108/315 (34%), Positives = 172/315 (54%), Gaps = 7/315 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  +      S + +L    A +     + + DI++   L +   E++ED L+ +D+G  
Sbjct: 112 AKPETPESVGSRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGAD 171

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----RPHVILVV 117
            + ++V++L T       +    +    +     L+        +       +P +I++V
Sbjct: 172 ASAQLVDDLRTDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPGAAKPSIIIMV 231

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT  GKL++       +VM+ A DTFR+AA DQL+ W  R +   V S+  G+
Sbjct: 232 GVNGTGKTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVPVVRSDKDGA 291

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL V
Sbjct: 292 DPASVAFEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLP--VDEVLLV 349

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +
Sbjct: 350 LDATTGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPD 409

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF  + F   I 
Sbjct: 410 DLAPFDPEGFVDGIL 424


>gi|295425201|ref|ZP_06817904.1| cell division protein FtsY [Lactobacillus amylolyticus DSM 11664]
 gi|295064977|gb|EFG55882.1| cell division protein FtsY [Lactobacillus amylolyticus DSM 11664]
          Length = 403

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 113/295 (38%), Positives = 171/295 (57%), Gaps = 6/295 (2%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG A T+      +    +  R +D+   ++LEDLLI SD+G   A+++ +EL  +   +
Sbjct: 101 KGLAKTNQGFGAKLNAFFAKFRTVDEDFFDDLEDLLIESDVGYETAEELTDELRDEAKLQ 160

Query: 78  DVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
               +  L +V      EL  +      +  N++  H+P++ L VGVNG GKTT IGKL+
Sbjct: 161 KAKTRDQLKEVIVQKLVELYDQNGNADDEKLNYNPDHKPNIYLFVGVNGAGKTTTIGKLA 220

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K+  D G KV+LAA DTFR+ A++QL+ W  R     V     +D A++ Y+A KQA   
Sbjct: 221 KRFKDQGKKVILAAADTFRAGAVEQLEEWGRRVDVPVVTGAEKADPASVVYDATKQAIDG 280

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           + D L++DTAGRL N   LM+ + K+ R +K+L P  P   L VLD +TGQNAL Q + F
Sbjct: 281 QADYLLVDTAGRLQNKKNLMSELEKIQRTIKKLAPEQPTETLLVLDGSTGQNALLQAKDF 340

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 TGL++TK+DG+++GG ++ I    K+PV  +G+GE   DL  F A +++
Sbjct: 341 DKTTKLTGLVLTKLDGSSKGGVVLAIRNEMKLPVKLVGLGEKPEDLADFDAANYA 395


>gi|325067019|ref|ZP_08125692.1| signal recognition particle-docking protein FtsY [Actinomyces oris
           K20]
          Length = 317

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 179/312 (57%), Gaps = 14/312 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             +++L    A       + +  ++S   L +   EE+ED L+ SD+G+ V   +++EL 
Sbjct: 9   GRMQRLRARLAGA-GGFGKAVLSVLSRGDLTEEDWEEIEDTLLTSDLGIEVTTSLMDELR 67

Query: 72  TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFS--------HRPHVILVVGVNG 121
           T+      S    +  V  +EL+  +   L +  N +               IL+VGVNG
Sbjct: 68  TQAKVLGTSDPEAVRTVLRAELLKLVDPSLDRSLNLERPTPAEGAQGKPAAAILMVGVNG 127

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT  GKL++ +      V+L A DTFR+AA +QL  W +R   D V SE  G+D A+
Sbjct: 128 TGKTTTCGKLARVLVAQDKTVVLGAADTFRAAAAEQLSTWGERVGVDVVRSEKEGADPAS 187

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY+A ++A A++ DV+++DTAGRL N + LM  +GK+ RV++++ P     +L VLDAT
Sbjct: 188 VAYDAAREASAQEADVVVVDTAGRLQNKAGLMDELGKIKRVMEKIAPVG--EILLVLDAT 245

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN +RQ ++F    G TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL P
Sbjct: 246 TGQNGMRQAQVFSEAVGVTGIVLTKLDGTAKGGIVVTVQKELGVPVKLVGLGEGADDLAP 305

Query: 301 FVAKDFSAVITG 312
           F  + F   + G
Sbjct: 306 FDPEGFVDALLG 317


>gi|125718364|ref|YP_001035497.1| SRPR, signal recognition particle-docking protein [Streptococcus
           sanguinis SK36]
 gi|125498281|gb|ABN44947.1| SRPR, signal recognition particle-docking protein, putative
           [Streptococcus sanguinis SK36]
 gi|327474735|gb|EGF20140.1| cell division protein FtsY [Streptococcus sanguinis SK408]
          Length = 512

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 172/307 (56%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  +
Sbjct: 202 PQEESTQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVASSL 261

Query: 67  VEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            EEL  +   ++      L    + +L+             +F +   V+L VGVNGVGK
Sbjct: 262 TEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVNGVGK 321

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++ Y+
Sbjct: 322 TTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASVVYD 381

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++AQA++VDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQN
Sbjct: 382 GMERAQAEQVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDASTGQN 441

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F ++
Sbjct: 442 ALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSE 501

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 502 NFMKGLL 508


>gi|68161017|gb|AAY86940.1| lr0017 [Lactobacillus reuteri]
          Length = 260

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 8/238 (3%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+++  V++ + K++   + P N    H P VI++VG+ G GKTT  GKL+ ++ +  
Sbjct: 11  PAQQIVKIVNDELTKLMGEEAVPLN-KAPHIPTVIMMVGLQGAGKTTTAGKLALRLKNEN 69

Query: 140 L-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             + M  A D +R AAI QL+  AD+            D   +  E  + A+    D +I
Sbjct: 70  HARPMFIAADVYRPAAITQLQQVADQIDVPVFEKGTDVDPVEIVREGMEVAKKNHNDYVI 129

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDTAGRL  +  LM  +  +  ++       P+ +L V+D+ TGQNA+   + F      
Sbjct: 130 IDTAGRLQIDEQLMDELANIKELVN------PNEILLVIDSMTGQNAVNTAQGFDDKLDI 183

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           TG+++TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ I G  D 
Sbjct: 184 TGVVLTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASRILGMGDM 241


>gi|268611752|ref|ZP_06145479.1| signal recognition particle protein [Ruminococcus flavefaciens
           FD-1]
          Length = 460

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRY 75
            F   S KL      + S  +L +  V+E + +    L+ +D+   V +  V+++  +  
Sbjct: 2   AFEGLSDKLNNVFKKLKSRGKLTESDVKEAMREVRLALLEADVSYKVVKDFVKKVTERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++V       Q+V+  V+E +  ++   +   N+  S  P VI++ G+ G GKTT   K
Sbjct: 62  GEEVLSSLTPAQQVIKIVNEELVTLMGDSNARINF-ASKPPTVIMMCGLQGSGKTTHAAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K +   G + +LAA D +R AAIDQL++   +                +A +A   A+
Sbjct: 121 LAKLLKKEGHRPLLAACDVYRPAAIDQLQVVGQKADVKVFEMGQID-PVVIAKQALAHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGRLH +  LM  + K+           P  ++ V+DA TGQ+A+   +
Sbjct: 180 DYGHDVLIIDTAGRLHIDEALMDELVKIKE------ETQPTEIMLVVDAMTGQDAVNVAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G T ++M+K+D   RGG  + ++     P+ F+G+GE ++D E F  +  ++ I
Sbjct: 234 AFDDAVGITSVLMSKLDSDTRGGAALSVLAVTGKPIKFVGMGEKLDDFEQFHPERMASRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|164658964|ref|XP_001730607.1| hypothetical protein MGL_2403 [Malassezia globosa CBS 7966]
 gi|159104503|gb|EDP43393.1| hypothetical protein MGL_2403 [Malassezia globosa CBS 7966]
          Length = 617

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 146/306 (47%), Gaps = 23/306 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    +L +  +D+     LD    D + +++   L+ SD+ V + QK+ +++      
Sbjct: 3   LADLGRRLNQAFSDLQRQPTLDAASVDQLLKDVCSALLASDVNVRLVQKLRQDVKDEVSS 62

Query: 73  ----KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-----PHVILVVGVNGVG 123
               K  A+  +  +  + V  ++   L+ L  P +    HR      HVI+ VG+ G G
Sbjct: 63  LLNDKGKAESYTDAQRKHQVQRIVFDYLVKLVDPGDGSTKHRLDKGQQHVIMFVGLQGSG 122

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT   KL+      G +  L   DTFR+ A DQLK  A +    F  S   +D  A+A 
Sbjct: 123 KTTSCTKLALWYQKRGYRTGLVCADTFRAGAFDQLKQNAAKARIPFYGSYTETDPVAIAS 182

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                 +  + DV+I+DT+GR      L A +  + R +K      P   + VLDA+ GQ
Sbjct: 183 AGVTSFKKNRFDVIIVDTSGRHKQEKDLFAEMVDISRAVK------PSQTIMVLDASIGQ 236

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            A  Q   F   A    + +TK+DG A+GGG I  V + + P+ F+G GE ++DLEPF A
Sbjct: 237 AAEAQCRAFKEAADFGAMFVTKLDGHAKGGGAISAVASTQTPIIFIGTGEHVHDLEPFRA 296

Query: 304 KDFSAV 309
           + F + 
Sbjct: 297 RPFISK 302


>gi|328946759|gb|EGG40897.1| cell division protein FtsY [Streptococcus sanguinis SK1087]
          Length = 498

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 171/307 (55%), Gaps = 3/307 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKI 66
            +  S   K  +    T       +    ++ R +D+   E+LE+LLI SD+GV VA  +
Sbjct: 188 PQEESTQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEDLEELLITSDVGVQVASSL 247

Query: 67  VEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            EEL  +   ++      L    + +L+             +F +   V+L VGVNGVGK
Sbjct: 248 TEELRYEARLENAKKPAALRQLIIEKLVDIYEKDGRFNEKINFQNGLTVMLFVGVNGVGK 307

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT IGKL+ K    G KVML A DTFR+ A+ QL  W  R     V     SD A++ Y+
Sbjct: 308 TTSIGKLAYKYKQQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKSDPASVVYD 367

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++A A+KVDVL+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQN
Sbjct: 368 GMERALAEKVDVLMIDTAGRLQNKDNLMAELEKIGRIIKRVDPEAPHETFLALDASTGQN 427

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           AL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F ++
Sbjct: 428 ALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGEFNSE 487

Query: 305 DFSAVIT 311
           +F   + 
Sbjct: 488 NFMKGLL 494


>gi|60623872|ref|NP_377232.2| signal recognition particle protein [Sulfolobus tokodaii str. 7]
 gi|28380160|sp|Q971S9|SRP54_SULTO RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
          Length = 445

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/300 (29%), Positives = 141/300 (47%), Gaps = 17/300 (5%)

Query: 26  LKLKEGITDIISSRRLD---DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV- 81
             LK+ +   + S   D   +   +EL+  LI+SD+ V +   + +++  +   +     
Sbjct: 3   DNLKDAVRKFLGSSNYDKAVNDFIKELQISLIKSDVNVKLVSNLTQKIKDRLEKEKPPTA 62

Query: 82  ----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
               +  +  V + + K+      P        P+VI++VGV G GKTT  GKL+     
Sbjct: 63  IERREWFISIVYDELSKLFGGDINP-EVMPKKIPYVIMLVGVQGSGKTTTAGKLALFYKK 121

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            G KV L A D +R AA DQL     + +         +DA  +A    ++  ++K D++
Sbjct: 122 KGYKVGLVAADVYRPAAYDQLVQIGKQINVPVYGEPNNTDAVGIAKRGVEKFLSEKYDII 181

Query: 198 IIDTAGRLHNNSI--LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           I+DTAGR        L+  +  M   +K      P  V+ V+DA+ GQ A      FH  
Sbjct: 182 IVDTAGRHGYGEEVKLLEEMKNMYSEIK------PDEVILVIDASIGQKAYDLASRFHQA 235

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +    +I+TKMDGTA+GGG +  V      + F+G GE +++LE F  + F + I G  D
Sbjct: 236 SPIGSIIVTKMDGTAKGGGALSAVAATGAAIKFIGTGEKLDELEVFNPRRFVSRILGMGD 295


>gi|307721358|ref|YP_003892498.1| signal recognition particle-docking protein FtsY [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979451|gb|ADN09486.1| signal recognition particle-docking protein FtsY [Sulfurimonas
           autotrophica DSM 16294]
          Length = 292

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 99/298 (33%), Positives = 165/298 (55%), Gaps = 11/298 (3%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
             +  K  E I  +   +++    ++ELED+L+ +D+  A+ + I+ E+   +  +++  
Sbjct: 6   KKSLNKTVEAIKTVAPKKKIT-FTKDELEDILLEADVEYALVEIILNEIYQDKITREILR 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
            ++L  ++             +       P V L+VGVNG GKTT I KL+ K    G K
Sbjct: 65  SKLLATLA----------YTSYTEPQFTPPFVELIVGVNGAGKTTTISKLAYKYKQEGKK 114

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+L AGDTFR+AAI+QL +WA++     V S+ G D++A+AY+A   A+AK  D +IIDT
Sbjct: 115 VLLGAGDTFRAAAIEQLTLWANKLDIPIVASKQGHDSSAVAYDAIDSAKAKGFDNVIIDT 174

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH  + L   + K+ R+  +    AP   + ++D T G +A+ Q + F+ + G  G+
Sbjct: 175 AGRLHTQTNLANELKKIKRICDKAHKGAPQRTVLIIDGTQGNSAISQAKAFNEMIGIDGI 234

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319
           I+TK+DGTA+GG +  I    ++P+ ++G GE   +L  F   +F   +   +   EE
Sbjct: 235 IITKLDGTAKGGSIFSIAYALELPILYVGTGEQPENLTSFDKYEFVDGLLDAIFIEEE 292


>gi|91762614|ref|ZP_01264579.1| signal recognition particle protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718416|gb|EAS85066.1| signal recognition particle protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 452

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/309 (25%), Positives = 145/309 (46%), Gaps = 16/309 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT  F      LK+  +  +  +++D+G+R  +   L+ +D+ + VA+  + ++  
Sbjct: 1   MFENLTNKFEEIFSSLKKAPS--LDEKQVDEGLR-AIRQALLEADVSLDVAKDFITKVKP 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K   +++         V+  V + +  +L   +   N +    P  +++VG+ G GKTT 
Sbjct: 58  KVLGQEIIRSTSPGDMVVKIVYDELVSLLGESNTDINLNAV-PPVPMMLVGLQGSGKTTT 116

Query: 128 IGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             KL+K +     K +M+ + D +R AA +QL+   ++ +   +    G   A +   A 
Sbjct: 117 TAKLAKYLEKNKKKKIMMVSLDVYRPAAQEQLRSLGEQNNILTLPIIEGQLPADICRRAV 176

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A     ++++ DTAGR   +  +M+ I ++  ++       P     V D+ TGQ A 
Sbjct: 177 SAASLNGAEIILFDTAGRTQIDLQMMSEIKQIENIIN------PTETFLVADSLTGQVAA 230

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              + F      TG+++T+ DG ARGG  + +    ++P+ FLGVGE I +LE F     
Sbjct: 231 EVAKEFKNTVNLTGIVLTRADGDARGGAALSMKYVSQVPIKFLGVGEKIENLEVFHPDRI 290

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 291 ANRILGMGD 299


>gi|224059270|ref|XP_002299799.1| predicted protein [Populus trichocarpa]
 gi|222847057|gb|EEE84604.1| predicted protein [Populus trichocarpa]
          Length = 493

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 137/305 (44%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   I  + ++  +D+        E+   L++SD+   + + +   +      
Sbjct: 3   LAQLGGSISRAIQQMSNATIIDEKALNDCLNEITRALLQSDVQFKLVRDMQTNIKKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            D++       + +      + K+L P    F      +  V++ VG+ G GKTT   K 
Sbjct: 63  DDLAAGHNKRRIIQQAIFNELCKILDPGKSSFTPK-KGKTSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S   SD   +A E  +  + 
Sbjct: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAEEGVETFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L   + ++    K      P  ++ V+D++ GQ A  Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATK------PDLIIFVMDSSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +     +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F  K F + + 
Sbjct: 236 FKQMVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|282891426|ref|ZP_06299925.1| cell division protein FtsY [Parachlamydia acanthamoebae str. Hall's
           coccus]
 gi|281498711|gb|EFB41031.1| cell division protein FtsY [Parachlamydia acanthamoebae str. Hall's
           coccus]
          Length = 309

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 112/300 (37%), Positives = 167/300 (55%), Gaps = 3/300 (1%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT- 72
             K+          L   I  +     +DD    +LE LL  +D+GV  A ++ E++   
Sbjct: 10  FEKMKNALTHAGSLLGNKIRALF-QGPIDDETWGKLEQLLYEADLGVQTAIELTEKVKKL 68

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-NWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +    +    +L  V   I ++L   + P      S  P VIL+VGVNG GKTT   KL
Sbjct: 69  SQQNSSLKGDELLSSVRTEILQVLNQHASPLREISSSSEPLVILIVGVNGNGKTTSTAKL 128

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K     G KV++AA DTFR+AA++QL +WA +   D V     SD AA+ ++A   A+A
Sbjct: 129 AKFFQSQGKKVLVAAADTFRAAAVEQLDVWAQKLGIDIVKGAPKSDPAAVVFDALSAAKA 188

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ +V+I+DTAGRL     LM  + K+ R  K+ +P +P   L VLDATTGQN + Q ++
Sbjct: 189 RQAEVVIVDTAGRLQTKIDLMQELEKIKRSCKKFNPESPQETLLVLDATTGQNGIDQAKV 248

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     TGLI+TK+DGT++GG ++ I     IPV  +G+GEGI+DLE F  + F+  + 
Sbjct: 249 FNRYTPITGLILTKLDGTSKGGIVVNIHKQLGIPVKLIGIGEGIDDLELFDPEKFTNALF 308


>gi|320449647|ref|YP_004201743.1| signal recognition particle-docking protein FtsY [Thermus
           scotoductus SA-01]
 gi|320149816|gb|ADW21194.1| signal recognition particle-docking protein FtsY [Thermus
           scotoductus SA-01]
          Length = 304

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 115/313 (36%), Positives = 164/313 (52%), Gaps = 23/313 (7%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +  +L  G A T   L + I          + V EELE  L+ +D+G+   ++++ E+
Sbjct: 1   MGFFDRLKAGLAKTRETLLKAI----PWGGSPEEVLEELEMALLAADVGLEATEELLAEV 56

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVG----- 123
                    S ++ L + V E + +ML P  +         RP     +   G       
Sbjct: 57  RA-------SGRKDLKEAVKEKLVQMLEPDERRATLRKLGFRPQNPKPIEPQGHVVLVVG 109

Query: 124 -----KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
                KTT I KL +   + G KVM  AGDTFR+A   QL  W  R     +    G+D 
Sbjct: 110 VNGVGKTTTIAKLGRYYRNLGKKVMFCAGDTFRAAGGAQLSEWGKRLDIPVIQGPEGADP 169

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AALA++A    +A+  D+L++DTAGRLH    LM  + K+ R + + DP  P  V  VLD
Sbjct: 170 AALAFDAASARKARGYDLLLVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD 229

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TGQN L Q + FH   G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +DL
Sbjct: 230 AVTGQNGLEQAKRFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIRFIGVGEGPDDL 289

Query: 299 EPFVAKDFSAVIT 311
           +PF A+ F   + 
Sbjct: 290 QPFDAEAFVEALL 302


>gi|326791393|ref|YP_004309214.1| signal recognition particle-docking protein FtsY [Clostridium
           lentocellum DSM 5427]
 gi|326542157|gb|ADZ84016.1| signal recognition particle-docking protein FtsY [Clostridium
           lentocellum DSM 5427]
          Length = 419

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 129/306 (42%), Positives = 192/306 (62%), Gaps = 1/306 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQK 65
            +E   +I++L  G   T   + +G+ D++S+ R +D+ + EELE+ LI +D GV     
Sbjct: 111 ETEKKGFIKRLFGGLTKTRDSILKGVDDVLSNFRHIDEDLYEELEEALIMADFGVETTLH 170

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           I+E L  K   + ++    L    + I   L+           + P VILV+GVNGVGKT
Sbjct: 171 IMESLKEKVKQEKITEPSALKVALQEIITKLLTDQPREEILNPNGPTVILVIGVNGVGKT 230

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGK+S        KV++AA DTFR+AAI+QL++W +R   D +  E G+DAAA+ ++A
Sbjct: 231 TSIGKMSHLFKSQHKKVLVAAADTFRAAAIEQLQVWVNRAGVDLIKHEEGTDAAAVVFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+++K DVLI DTAGRL N + LM  + K+ R++ R  P A   +L VLDATTGQNA
Sbjct: 291 IAAAKSRKSDVLICDTAGRLQNKTNLMKELEKISRIIAREYPEAKKEILIVLDATTGQNA 350

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           ++QV++F  VA   G+I+TK+DGTA+GG ++ I  + K+PV ++GVGE INDL+PF A+ 
Sbjct: 351 IQQVKLFKEVADINGIILTKLDGTAKGGAIVGIYESLKVPVKYIGVGEQINDLQPFDAEI 410

Query: 306 FSAVIT 311
           F+  + 
Sbjct: 411 FATALF 416


>gi|255506597|ref|ZP_05382236.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis D(s)2923]
 gi|289525070|emb|CBJ14540.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis Sweden2]
 gi|296434610|gb|ADH16788.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis E/150]
 gi|296438328|gb|ADH20481.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis E/11023]
          Length = 448

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 149/305 (48%), Gaps = 20/305 (6%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           +S S KL    + + +++R+ +        E+   L+ +D+     +  + ++  K   +
Sbjct: 3   SSLSQKLSNIFSSLFTAKRVTEESISDSIREVRLALLDADVNYQAVKDFIAKVKQKVVGE 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q+ +  + E +   L   S+         P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVWKHVSPGQQFIKCLHEELSSSLA--SEQTAVSLRGCPAVILLCGLQGAGKTTTCAKLA 120

Query: 133 KKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
                     KV++A+ D  R +A++QL+    +T ADF   + G+D   +A EA + A+
Sbjct: 121 DYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGADFFRRK-GNDPVDMAAEAVQHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  D++++DTAGRLH +  LM  +  + RV       +P   L V++   GQ+A+   +
Sbjct: 180 SQGYDLVLVDTAGRLHVDDALMDELVAIARV------TSPCETLFVMNLAMGQDAVVTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG++++  DG AR G ++ +      P+ F G GE I DL PF A+  +  I
Sbjct: 234 AFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKFEGCGEKIKDLRPFNAQSMAERI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|281424055|ref|ZP_06254968.1| signal recognition particle protein [Prevotella oris F0302]
 gi|281401838|gb|EFB32669.1| signal recognition particle protein [Prevotella oris F0302]
          Length = 449

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 141/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGQITEINVAETLKDVRRALLDADVNFKVAKSFTDTVKQKAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + +  ++   +   +      P VIL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIVHDELADLMGGET--VDIKLEGHPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +   K  L  A D +R AAI+QLK+  ++            D   +A  A ++A+
Sbjct: 120 ANLLKNKKNKKPLLVACDVYRPAAIEQLKVVGEQIGVPVYSEPESKDVLTIANNAVREAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I  +   L       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGNDVVIVDTAGRLAVDEEMMTEIANLKNALH------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFVGTGEKMEAIDAFHPMRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|308183255|ref|YP_003927382.1| signal recognition particle protein [Helicobacter pylori PeCan4]
 gi|308065440|gb|ADO07332.1| signal recognition particle protein [Helicobacter pylori PeCan4]
          Length = 448

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVF-HEENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|325180969|emb|CCA15378.1| signal recognition particle putative [Albugo laibachii Nc14]
          Length = 509

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELL----T 72
                 KL+  +  + ++  +DD V     +++   L+ SD+ V + ++I + +      
Sbjct: 3   LEQLGSKLQSALAALNTTTIVDDEVLNNIMKDVCAALLESDVQVQLVRQIRDNVRLTVAA 62

Query: 73  KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  V+ +R++   V + + ++L    K          + ++ VG+ G GKTT I K 
Sbjct: 63  HESAAGVNRRRLIQKAVLDQLIQIL-QSKKKPFKLKKGSCNTVMFVGLQGSGKTTSIAKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  +   DTFR+ A DQLK  A +    F  S   +D   +A +   Q +A
Sbjct: 122 AHYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRIPFYGSYTEADPVRIAEQGVAQFRA 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++++DT+GR    + L A + ++   +       P  V+ V+D+T GQ    Q   
Sbjct: 182 DHYELILVDTSGRHKQETDLFAEMKQVAAAV------RPDDVVFVMDSTIGQAVYDQSSA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V     P+ F G GE  ++LE F A+ F + + 
Sbjct: 236 FVQSVDVGSVIITKLDGHAKGGGALSAVAATGSPIIFYGTGEHFSELETFDAQRFVSRMM 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|154285458|ref|XP_001543524.1| hypothetical protein HCAG_00570 [Ajellomyces capsulatus NAm1]
 gi|150407165|gb|EDN02706.1| hypothetical protein HCAG_00570 [Ajellomyces capsulatus NAm1]
          Length = 353

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 142/309 (45%), Gaps = 22/309 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTK--- 73
                 ++   + D+  S  +D    D + +E+   L+ +D+ V + Q + + +      
Sbjct: 3   LQDLGRRINAAVNDLTRSNNVDAQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPF 62

Query: 74  -----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                   K   +Q+ ++D    +  ++ P ++PF      R +VI+ VG+ G GKTT  
Sbjct: 63  SSLPPAVNKKRLIQKTVFD---QLVALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTC 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL++     G +  L   DTFR+ A DQLK  A +    +  S   +D A +A E   +
Sbjct: 119 TKLARHYQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAK 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + ++ D++I+DT+GR      L   + ++   ++      P   + VLD T GQ A  Q
Sbjct: 179 FKKERFDIIIVDTSGRHKQEEDLFVEMTQIQTAIQ------PDQTILVLDGTIGQAAESQ 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F  
Sbjct: 233 SAAFKAAADFGAIIITKTDGNAAGGGAISAVAATHTPIIFLGTGEHMLDLERFSPKPFIQ 292

Query: 309 VITGCLDYG 317
            + G  D  
Sbjct: 293 KLLGMGDMA 301


>gi|46446288|ref|YP_007653.1| signal recognition particle chain ffh [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399929|emb|CAF23378.1| probable signal recognition particle chain ffh [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 454

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 144/306 (47%), Gaps = 19/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S + +L+   + +   +RL +        E+   L+ +D+   V + +V+ L  +   
Sbjct: 14  LGSLTTQLQNVFSKLSGKKRLTEENISDAVNEVRLALLEADVNYGVTKTLVKRLKEQSLG 73

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q+ +  V + +  ++    +        +P VI++ G+ G GKTT   KL
Sbjct: 74  EQVIKSVTPGQQFIKIVHDELVALMGG--EEATLHLEGKPAVIMLCGLQGAGKTTHCAKL 131

Query: 132 SKKMSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +K +   G     +LAA D  R AA++QLK    +            D   +A +A K A
Sbjct: 132 AKYLKKKGLCKNPLLAACDLQRPAAVEQLKTLGQQIHVPVFTIVGEKDPVRIAKDALKHA 191

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q  + D+LI+DTAGRLH ++ LM  + K+  VL       P  +L V +ATTGQ+A+   
Sbjct: 192 QEAQHDLLIVDTAGRLHVDNELMTQLEKIKEVLN------PGEILFVANATTGQDAVNVA 245

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F      +G I+T +DG ARGG  I I      P+ F G+GE ++DL+ F     +  
Sbjct: 246 TEFSKRIEVSGTILTMLDGNARGGAAISIREVTGKPLKFEGIGEKVDDLQLFNPNSMADR 305

Query: 310 ITGCLD 315
           I G  D
Sbjct: 306 ILGMGD 311


>gi|188527936|ref|YP_001910623.1| signal recognition particle protein [Helicobacter pylori Shi470]
 gi|188144176|gb|ACD48593.1| signal recognition particle protein [Helicobacter pylori Shi470]
 gi|308062429|gb|ADO04317.1| signal recognition particle protein [Helicobacter pylori Cuz20]
 gi|308063935|gb|ADO05822.1| signal recognition particle protein [Helicobacter pylori Sat464]
          Length = 448

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDGKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSASAFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|331266282|ref|YP_004325912.1| SRPR, signal recognition particle-docking protein [Streptococcus
           oralis Uo5]
 gi|326682954|emb|CBZ00571.1| SRPR, signal recognition particle-docking protein [Streptococcus
           oralis Uo5]
          Length = 433

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 176/314 (56%), Gaps = 7/314 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +++     +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 118 EEELPQVEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 177

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVV 117
           VA  + EEL  +   ++      L  V  +I K++    K  N+D    F     V+L V
Sbjct: 178 VASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQDGLTVMLFV 235

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 236 GVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKAD 295

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     L
Sbjct: 296 PASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLAL 355

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D
Sbjct: 356 DASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDD 415

Query: 298 LEPFVAKDFSAVIT 311
           +  F +++F   + 
Sbjct: 416 IGEFNSENFMKGLL 429


>gi|315038612|ref|YP_004032180.1| signal recognition particle GTPase [Lactobacillus amylovorus GRL
           1112]
 gi|312276745|gb|ADQ59385.1| signal recognition particle GTPase [Lactobacillus amylovorus GRL
           1112]
          Length = 439

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 182/316 (57%), Gaps = 13/316 (4%)

Query: 2   SNQKVASESLSWIRKL-TKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           ++++ +S+      KL  KG   T+      +    +  R +D+   ++LEDLLI SD+G
Sbjct: 119 NDEEKSSDEEDAQEKLYEKGLEKTNKGFGARLNAFFARFRSVDEDFFDDLEDLLIESDVG 178

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--------SKPFNWDFSHRP 111
              A+++ +EL  +   ++   +    D+ ++I + L+ L         +   +D   +P
Sbjct: 179 FETAEQLTDELREEAKLQNAKSRD---DLKQVIVEKLVDLYDQGGQGKDEKLAYDPDAKP 235

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +V L VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL+ W  R     V 
Sbjct: 236 NVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLEEWGKRVGVPVVT 295

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            +  +D A++ Y+A +QA  +K D L++DTAGRL N   LMA + K+ R +K+L P  P 
Sbjct: 296 GKEKADPASVVYDATEQAIKEKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPEQPA 355

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I    K+PV  +G+
Sbjct: 356 ETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMKLPVKLVGL 415

Query: 292 GEGINDLEPFVAKDFS 307
           GE   DL  F A +++
Sbjct: 416 GEKAEDLADFDAANYA 431


>gi|294950295|ref|XP_002786558.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
 gi|239900850|gb|EER18354.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
          Length = 533

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELL----- 71
            A    ++   +  +  +  +D+ V +E    +   L+++D+ V    ++ + +      
Sbjct: 3   LADLGKQISGALRKLGKATVIDEAVLDECLKEISTALLQADVNVRYVAELRKNIKRTVDL 62

Query: 72  TKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +  A   + QRV+   V   + +ML P  +P+      +P+VI+ VG+ G GKTT   K
Sbjct: 63  EELAAPGSNKQRVIQKAVVNQLVEMLSPDKEPYKPK-KGQPNVIMFVGLQGSGKTTSCTK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            +      G +V L   DTFR+ A DQLK  A +    F  S + SD   +A E     +
Sbjct: 122 YAHYYQRKGWRVALVCADTFRAGAFDQLKQNATKVKIPFYGSYVESDPVKIAKEGVDLFK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K D++I+DT+GR    + L   + ++ + +       P  ++ V+D+  GQ    Q +
Sbjct: 182 MDKYDIIIVDTSGRHRQEAALFDEMTQVAKAVN------PDEIVFVMDSHIGQACFEQAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +++TK+DG A+GGG +  V     P+ F+G GE  ++ EPF A+ F   +
Sbjct: 236 AFKDTVSVGSVVVTKLDGHAKGGGALSAVAATDSPIIFIGTGEHFDEFEPFDAQSFVQRL 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGLGD 300


>gi|15827857|ref|NP_302120.1| SRP family GTP-binding protein [Mycobacterium leprae TN]
 gi|221230334|ref|YP_002503750.1| putative SRP family of GTP-binding protein [Mycobacterium leprae
           Br4923]
 gi|3334190|sp|O33010|FTSY_MYCLE RecName: Full=Cell division protein ftsY homolog
 gi|2251151|emb|CAB10596.1| FtsY protein [Mycobacterium leprae]
 gi|13093409|emb|CAC30579.1| possible SRP family of GTP-binding protein [Mycobacterium leprae]
 gi|219933441|emb|CAR71723.1| possible SRP family of GTP-binding protein [Mycobacterium leprae
           Br4923]
          Length = 430

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 163/306 (53%), Gaps = 5/306 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
                + +L    A T       I  +I    LD+   +ELED L+ +D+G    + ++ 
Sbjct: 126 PPEGRLDRLRGRLARTQNAFGRSILGLIVGGDLDEDSWQELEDTLLVADLGPVATESVMS 185

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGKT 125
            L ++    +V  +      + +++   L P           +  P V+L+VGVNG GKT
Sbjct: 186 ALRSRLLNSNVHTESDARTMLRDVLISELQPDMDRSIRALPHADHPAVLLIVGVNGTGKT 245

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A+ V    G+D A++A++A
Sbjct: 246 TTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWASRVGAELVRGVEGADPASVAFDA 305

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +      DV++IDTAGRLH    LM  + K+ RV+ R    A   VL VLDAT GQN 
Sbjct: 306 VDKGIGAGADVVVIDTAGRLHTKVGLMDELDKIKRVVTRR--AAVDEVLLVLDATIGQNG 363

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L QV +F  V   TG ++TK+DGTA+GG +  I     +PV  +G+GEG +DL PF    
Sbjct: 364 LTQVRVFAEVVDITGAVLTKLDGTAKGGIVFRIQRELGVPVKLVGLGEGPDDLAPFEPAV 423

Query: 306 FSAVIT 311
           F   + 
Sbjct: 424 FVDALL 429


>gi|317057722|ref|YP_004106189.1| signal recognition particle-docking protein FtsY [Ruminococcus
           albus 7]
 gi|315449991|gb|ADU23555.1| signal recognition particle-docking protein FtsY [Ruminococcus
           albus 7]
          Length = 301

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 124/302 (41%), Positives = 186/302 (61%), Gaps = 3/302 (0%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL  G   T   +   I  ++ +  ++D+ + EELE+ LI SDIGV  + KI ++
Sbjct: 1   MGFFEKLKNGLRKTKESMMGRIERLLHAFTKIDEDLFEELEETLILSDIGVNTSVKICDK 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +      K ++    + D+ + +   ++   +P   D S  P VILV+GVNGVGKTT IG
Sbjct: 61  VRDYVKQKGITDPTQIKDILKDVIAEMLGEEQPL--DMSTVPSVILVIGVNGVGKTTTIG 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ ++ + G  V++AA DTFR+AAIDQL++W DR   + +  + GSD AA+ ++A   A
Sbjct: 119 KLANQLKNQGKHVIVAAADTFRAAAIDQLEVWTDRAGVELIKHKEGSDPAAVVFDALTAA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  DV+I DTAGRLHN   LM  + K+ R++ +        VL  LDATTGQNA+ Q 
Sbjct: 179 KARNADVVICDTAGRLHNKKNLMKELEKISRIVHQQAEGCALEVLLALDATTGQNAVNQA 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+  A  TG+I+TK+DGTA+GG +I I    KIPV  + VGE I+D++PF+AKDF   
Sbjct: 239 QQFNEAADITGIILTKLDGTAKGGIVITICDDLKIPVKLVTVGEKIDDIQPFIAKDFVDA 298

Query: 310 IT 311
           + 
Sbjct: 299 LF 300


>gi|254458468|ref|ZP_05071893.1| signal recognition particle-docking protein FtsY [Campylobacterales
           bacterium GD 1]
 gi|207084776|gb|EDZ62063.1| signal recognition particle-docking protein FtsY [Campylobacterales
           bacterium GD 1]
          Length = 297

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 104/307 (33%), Positives = 172/307 (56%), Gaps = 20/307 (6%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           + K  A T+      I  +   R++    + ELED+L+ +D+   + + I+ E+   +  
Sbjct: 5   IKKSLARTAD----AIRTVAPKRKIS-FTKGELEDILLEADVEYDLVEIIINEIYQDKVT 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +D+   ++L  ++             +       P V L+VGVNG GKTT I KL+++  
Sbjct: 60  RDILRSKLLATLA----------YTSYKEPEFTAPFVELIVGVNGAGKTTTISKLAQRYK 109

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           + G KV+L AGDTFR+AAI+QL +W+ +     V S+ G D++A+A++    A+AK  D 
Sbjct: 110 NEGKKVILGAGDTFRAAAIEQLTLWSKKLDIPIVSSKQGHDSSAVAFDTIDSAKAKGFDN 169

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +IIDTAGRLH  + L   + K+ R+  +  P +PH  + ++D T G +A+ Q + F+ + 
Sbjct: 170 VIIDTAGRLHTQTNLANELKKINRICDKAHPGSPHRTILIIDGTQGNSAIAQAKAFNEMI 229

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD- 315
           G  G+I+TK+DGTA+GG +  I    ++P+ F+G GE   +L PF   +F     G LD 
Sbjct: 230 GIDGIIITKLDGTAKGGSIFSIAYALELPILFVGTGEQPENLTPFDKYEFVD---GLLDA 286

Query: 316 -YGEEKI 321
            + EE+I
Sbjct: 287 IFVEEEI 293


>gi|70984902|ref|XP_747957.1| signal recognition particle protein SRP54 [Aspergillus fumigatus
           Af293]
 gi|66845585|gb|EAL85919.1| signal recognition particle protein SRP54 [Aspergillus fumigatus
           Af293]
 gi|159126118|gb|EDP51234.1| signal recognition particle protein SRP54 [Aspergillus fumigatus
           A1163]
          Length = 522

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 139/306 (45%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + + +    
Sbjct: 3   LQDLGRRINAAVNDLTRSSNLDEKAFDDMLKEICAALLSADVNVRLVQTLRKSIKSSVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ++ P ++PF      R +VI+ VG+ G GKTT   KL
Sbjct: 63  SSLPPAVNKKRLIQKAVFDELVALVDPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + 
Sbjct: 122 ARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ +V+I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   
Sbjct: 182 ERFEVIIVDTSGRHKQEEELFTEMTQIQNAVT------PDQTILVLDSTIGQAAEAQSAA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + 
Sbjct: 236 FKATANFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHLMDLERFEPKAFVQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|227545683|ref|ZP_03975732.1| signal recognition particle GTPase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227213799|gb|EEI81638.1| signal recognition particle GTPase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 425

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 108/315 (34%), Positives = 172/315 (54%), Gaps = 7/315 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  +      S + +L    A +     + + DI++   L +   E++ED L+ +D+G  
Sbjct: 112 AKPETPESVGSRLTRLKAKLAKSGNPFGKALFDILAKDNLSEADWEDVEDTLLLADVGAD 171

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH----RPHVILVV 117
            + ++V++L T       +    +    +     L+        +       +P VI++V
Sbjct: 172 ASAQLVDDLRTDARITGKADPAEVRATLKEKLLDLVGRDTDRRLNAEKPGAAKPSVIIMV 231

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT  GKL++       +VM+ A DTFR+AA DQL+ W  R +   V S+  G+
Sbjct: 232 GVNGTGKTTTAGKLARLFVAENKQVMMGAADTFRAAAADQLETWGARVNVTVVRSDKDGA 291

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A+EA  +A+    DVLIIDTAGRL N S LM  +GK+ RV ++  P     VL V
Sbjct: 292 DPASVAFEASAKAKEANADVLIIDTAGRLQNKSNLMDELGKIRRVTEKNLP--VDEVLLV 349

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q ++F    G TG++++K+DG+A+GG ++ +     +PV  +G+GEG +
Sbjct: 350 LDATTGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPD 409

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF  + F   I 
Sbjct: 410 DLAPFDPEGFVDGIL 424


>gi|225551839|ref|ZP_03772782.1| signal recognition particle protein [Borrelia sp. SV1]
 gi|225371634|gb|EEH01061.1| signal recognition particle protein [Borrelia sp. SV1]
          Length = 444

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S     +  I  +     ++D       E +++ L+ +D+ + V ++ +  ++ +   
Sbjct: 2   LESLGSNFRNFINYLSGKSTINDKNIAEAIEIIKNSLVDADVNLRVIRRFLNSIIEESKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V        + +  V++ + K L   S   +   +++   IL++G+ G GKTT   KL
Sbjct: 62  VKVLRGIDPKSQFIKIVNDNLVKFLGGKSYGLSLHPANKQSYILMLGLQGSGKTTTCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S K+     KV+L A DTFR+AA++QLKI   +        E   D   +   + K A++
Sbjct: 122 SLKLKKENRKVLLVAADTFRAAAVEQLKILGGQVGVPVFSIEGEKDPIKIVKASMKFAES 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DT GRL   S+L+  I K+  +L       P   + V+D+  GQ A+   + 
Sbjct: 182 NFFDSVIVDTRGRLEIESLLVEEIKKIKGIL------RPAETILVVDSMMGQVAVNIAKE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I +K D   RGG ++       +P+ F+GVGE I DL+ F  +  ++ I 
Sbjct: 236 FNENVGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKFIGVGEKIEDLDSFYPERIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|317011348|gb|ADU85095.1| signal recognition particle protein [Helicobacter pylori
           SouthAfrica7]
          Length = 448

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 150/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ T+  A  +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVETQTKANGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAQGGSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVLI+
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVQEIANNALKRAKEAQFDVLIV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMKELKEVKAILN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|54020010|ref|YP_115574.1| signal recognition particle protein [Mycoplasma hyopneumoniae 232]
 gi|53987183|gb|AAV27384.1| signal recognition particle protein [Mycoplasma hyopneumoniae 232]
          Length = 440

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 150/318 (47%), Gaps = 27/318 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               + +++  +  +  S  +++     +  E+   L+ +D+ + V +  + ++ T+   
Sbjct: 2   LEFLTNRIQSSLKKLQKSLTINESDLVEITREIRLALLEADVNLLVVKDFISKVKTQVLK 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++      Q  L  + + + ++L   SK  N  F+  P +I++VG+ G GKTT   KL
Sbjct: 62  QGLTSKLNPQQEFLKILHQNLVEILGINSKSIN--FNKTPTIIMLVGLQGSGKTTTAAKL 119

Query: 132 SKKMSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +          K++L A DT+R AAIDQLK    +   +    E       +A EA   +
Sbjct: 120 AVFARQKKLAKKILLVACDTYRPAAIDQLKQLGKQVLIEVFYVE--KSPVQIAKEALIYS 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D++I DTAGRL  N  LM  + ++   +K      P  +L +LDA +GQ+ +   
Sbjct: 178 KNNDFDLVIFDTAGRLSINEELMNELSEIKENIK------PDQILFILDALSGQDIINVA 231

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F+     TG I+TK+D  AR G  + I    KIPV  LG GE I+ LE F     +  
Sbjct: 232 QIFNQKINLTGAIITKLDSNARAGAALSITHLLKIPVLLLGTGEKISALELFHPNRMADR 291

Query: 310 ITGCLD------YGEEKI 321
           I G  D        EE I
Sbjct: 292 ILGMGDVRSLLEQAEENI 309


>gi|323306831|gb|EGA60116.1| Srp54p [Saccharomyces cerevisiae FostersO]
          Length = 547

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 148/311 (47%), Gaps = 22/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELL---- 71
            A    ++   + + IS+ + D     D + + +   L+ SD+ +A+  K+   +     
Sbjct: 3   LADLGKRINSAVNNAISNTQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRSQLL 62

Query: 72  -TKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILVVGVNGVGK 124
              R  K  +  +    + + +   L  L       +        + ++I+ VG+ G GK
Sbjct: 63  SENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEEKAFVPKKRKTNIIMFVGLQGSGK 122

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT   KL+   S  G KV L   DTFR+ A DQLK  A R    F  S   +D A +A E
Sbjct: 123 TTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRARIPFYGSYTETDPAKVAEE 182

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              + + +K D++I+DT+GR H    L   + ++  V+K      P+  + VLDA+ GQ 
Sbjct: 183 GINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIK------PNQTIMVLDASIGQA 236

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A +Q + F   +    +I+TKMDG ARGGG I  V     P+ F+G GE I+DLE F  K
Sbjct: 237 AEQQSKAFKESSDFGAIILTKMDGHARGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPK 296

Query: 305 DFSAVITGCLD 315
            F + + G  D
Sbjct: 297 SFISKLLGIGD 307


>gi|195941513|ref|ZP_03086895.1| signal recognition particle protein (ffh) [Borrelia burgdorferi
           80a]
          Length = 444

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S     +  I  +     ++D       E +++ L+ +D+ + V ++ +  ++ +   
Sbjct: 2   LESLGSNFRNFINYLSGKSTINDKNIAEAIEIIKNSLVDADVNLRVIRRFLNSIIEESKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V        + +  V++ + K L   +   +   +++   IL++G+ G GKTT   KL
Sbjct: 62  VKVLRGIDPKSQFIKIVNDNLVKFLGGKNYELSLHPTNKQSYILMLGLQGSGKTTTCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S K+     KV+L A DTFR+AA++QLKI   +        E   D   +   + K A++
Sbjct: 122 SLKLKKENRKVLLVAADTFRAAAVEQLKILGGQVGVPVFSIEGEKDPIKIVKASMKFAES 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DT GRL   S+L+  I K+  +L+          + V+D+  GQ A+   + 
Sbjct: 182 NFFDSVIVDTRGRLEIESLLVEEIKKIKGILQPA------ETILVVDSMMGQVAVNIAKE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I +K D   RGG ++       +P+ F+GVGE I DL+ F  +  ++ I 
Sbjct: 236 FNENVGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKFIGVGEKIEDLDSFYPERIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|239618078|ref|YP_002941400.1| signal recognition particle-docking protein FtsY [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506909|gb|ACR80396.1| signal recognition particle-docking protein FtsY [Kosmotoga olearia
           TBF 19.5.1]
          Length = 305

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 124/301 (41%), Positives = 189/301 (62%), Gaps = 6/301 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + ++ K+ +G   T   +   + +I+S  +LD    EELE+LLI SD+GV   ++++E L
Sbjct: 1   MGFLSKIKEGLKKTRDSVFSKVKNILSLEKLDAETLEELEELLILSDMGVETVEEVIERL 60

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K       V+     + +++  +L           + +P+V+L+VGVNG GKTT IGK
Sbjct: 61  KEKVK----EVKDPNTALKKVLIDILKEEE--EEKKEAPKPYVLLIVGVNGTGKTTTIGK 114

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS+   + G +V+LAA DTFR+AA++QLK+W++R  ADF+    G+DAAA+AY+A   A+
Sbjct: 115 LSRIFKEQGKRVVLAAADTFRAAAVEQLKVWSERVGADFISQGQGADAAAVAYDAVMHAK 174

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +K  D++IIDTAGRLH    LM  + K+ R + R+ P APH V  V+DATTGQN L Q +
Sbjct: 175 SKGKDIVIIDTAGRLHTRHNLMEELKKVHRTIGRVLPGAPHDVWLVIDATTGQNGLVQAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+++TK+DGTA+GG +  I    K PV ++GVGEG++DL+PF  ++F   +
Sbjct: 235 KFAETVNITGIVLTKLDGTAKGGIVFAIKKELKTPVKYIGVGEGVDDLKPFDPEEFVDAL 294

Query: 311 T 311
            
Sbjct: 295 L 295


>gi|168491164|ref|ZP_02715307.1| cell division protein FtsY [Streptococcus pneumoniae CDC0288-04]
 gi|183574535|gb|EDT95063.1| cell division protein FtsY [Streptococcus pneumoniae CDC0288-04]
          Length = 425

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 174/314 (55%), Gaps = 7/314 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             +      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 110 EPERPQAEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 169

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVV 117
           VA  + EEL  +   ++      L  V  +I K++    K  N+D    F     V+L V
Sbjct: 170 VASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKGGNYDERIHFQAGLTVMLFV 227

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 228 GVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKAD 287

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     L
Sbjct: 288 PASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLAL 347

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D
Sbjct: 348 DASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDD 407

Query: 298 LEPFVAKDFSAVIT 311
           +  F +++F   + 
Sbjct: 408 IGEFNSENFMKGLL 421


>gi|126460331|ref|YP_001056609.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pyrobaculum
           calidifontis JCM 11548]
 gi|171855105|sp|A3MWX6|SRP54_PYRCJ RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|126250052|gb|ABO09143.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pyrobaculum
           calidifontis JCM 11548]
          Length = 431

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 149/304 (49%), Gaps = 18/304 (5%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKI----VEELLTKR 74
             S    + I  I     +D+ V +EL    +  L+++D+ + + +      V+ +  ++
Sbjct: 2   KLSEVFSKLIEKIRGVDYIDEAVLQELSREIQRSLLKADVPLELVKAFTDSAVKRIREEK 61

Query: 75  YAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
               +  +  L Y + E + K+L    +P  +  + +P+V+L++GV G GKTT   KL+K
Sbjct: 62  PPAGIPPREYLVYVLYEELVKLLGG-EQPAEFKPTKKPYVVLLLGVEGSGKTTTAAKLAK 120

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            ++  G KV L   DT R AA DQLK  A++    F     G +A  +A    +  +   
Sbjct: 121 YLAKRGYKVGLVETDTIRPAAFDQLKQLAEKIGVPFYGERDGKNAVEIAVRGVQNFK--N 178

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +DV+IIDTAGR  N   L+  +  +   +K      P  V  V+DAT G+ A  Q E F 
Sbjct: 179 MDVVIIDTAGRHRNEEELLKEVKAIYDAVK------PDEVFLVIDATVGKLAAAQAEAFM 232

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                  +I+TKMD TARGGG +  V      V F+GVGE +++ E F  + F A + G 
Sbjct: 233 KYLPIHSVIITKMDSTARGGGALAAVAKTGARVKFIGVGEDVDEFELFNPRKFVARVLGM 292

Query: 314 LDYG 317
            D  
Sbjct: 293 GDLD 296


>gi|46198376|ref|YP_004043.1| signal recognition particle receptor FtsY [Thermus thermophilus
           HB27]
 gi|46195998|gb|AAS80416.1| signal recognition particle receptor FtsY [Thermus thermophilus
           HB27]
          Length = 304

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 118/314 (37%), Positives = 167/314 (53%), Gaps = 25/314 (7%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +    +L  G A T  +L + I          + V EELE  L+ +D+GVA  +++++E+
Sbjct: 1   MGLFDRLRAGLAKTRERLLKAI----PWGSDPEEVLEELEMALLAADVGVAATEELLKEV 56

Query: 71  LT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVG---- 123
               +R  K+V        V E + +ML P  +         RP  +  V   G      
Sbjct: 57  RASGRRDLKEV--------VKEKLVQMLEPDERRATLRKLGFRPQKLRPVEPQGHVVMVV 108

Query: 124 ------KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
                 KTT I KL +     G KV+  AGDTFR+A   QL  W  R     +    G+D
Sbjct: 109 GVNGVGKTTTIAKLGRLYQGLGKKVLFCAGDTFRAAGGAQLAEWGKRLGIPVIQGPEGAD 168

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AALA++A K  +A+ +D+L +DTAGRLH    LM  + K+ R + + DP  P  V  VL
Sbjct: 169 PAALAFDAAKARRARGLDLLFVDTAGRLHTKQGLMEELKKVKRAIAKADPGEPGEVWLVL 228

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN L Q + FH   G TG+I+TK+DGTA+GG L+PIV T K+P+ F+GVGEG +D
Sbjct: 229 DAVTGQNGLEQAKRFHEAVGLTGVIVTKLDGTAKGGVLVPIVRTLKVPIRFIGVGEGPDD 288

Query: 298 LEPFVAKDFSAVIT 311
           L+PF A+ F   + 
Sbjct: 289 LQPFDAEAFVEALL 302


>gi|15595039|ref|NP_212828.1| signal recognition particle protein (ffh) [Borrelia burgdorferi
           B31]
 gi|2688634|gb|AAC67049.1| signal recognition particle protein (ffh) [Borrelia burgdorferi
           B31]
          Length = 447

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S     +  I  +     ++D       E +++ L+ +D+ + V ++ +  ++ +   
Sbjct: 5   LESLGSNFRNFINYLSGKSTINDKNIAEAIEIIKNSLVDADVNLRVIRRFLNSIIEESKG 64

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V        + +  V++ + K L   +   +   +++   IL++G+ G GKTT   KL
Sbjct: 65  VKVLRGIDPKSQFIKIVNDNLVKFLGGKNYELSLHPANKQSYILMLGLQGSGKTTTCAKL 124

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S K+     KV+L A DTFR+AA++QLKI   +        E   D   +   + K A++
Sbjct: 125 SLKLKKENRKVLLVAADTFRAAAVEQLKILGGQVGVPVFSIEGEKDPIKIVKASMKFAES 184

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DT GRL   S+L+  I K+  +L       P   + V+D+  GQ A+   + 
Sbjct: 185 NFFDSVIVDTRGRLEIESLLVEEIKKIKGIL------RPAETILVVDSMMGQVAVNIAKE 238

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I +K D   RGG ++       +P+ F+GVGE I DL+ F  +  ++ I 
Sbjct: 239 FNENVGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKFIGVGEKIEDLDSFYPERIASRIL 298

Query: 312 GCLD 315
           G  D
Sbjct: 299 GMGD 302


>gi|88607548|ref|YP_504956.1| signal recognition particle protein [Anaplasma phagocytophilum HZ]
 gi|88598611|gb|ABD44081.1| signal recognition particle protein [Anaplasma phagocytophilum HZ]
          Length = 449

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 149/308 (48%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LTKGF+S   +L       ISS+  D  V E++   L+ +D+ + V  + +E + +
Sbjct: 1   MFNSLTKGFSSALQRLSG--KREISSKDFD-LVIEDITQALLDADVNLGVVDEFIENVKS 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K    DV       Q V+  + E + ++L       +      P VI++VG+ GVGKTT 
Sbjct: 58  KIVGGDVVKGVLPEQMVIKRIEECLIEVLGNEKSALDLK-GKIPAVIMMVGLQGVGKTTN 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             K++ ++       ++A+ D +R AA +QLK+ AD    D +          +A  A +
Sbjct: 117 TVKVALRLKKDSKNPLVASLDVYRPAAREQLKVLADGVGIDSLPIVEEQKPLDIAKRAMR 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+ K  DV+++DTAGRLH N  ++  +  + + +          ++ V+D+  GQ+A+ 
Sbjct: 177 EARLKGHDVVLLDTAGRLHINQDMIDELKCVKKEVSPA------EIVLVVDSLMGQDAVT 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            V  F+   G TG I T+ DG  RGG ++ + +    P+ F+  GE   DL+ F     +
Sbjct: 231 MVRKFNEELGITGTIFTRADGDPRGGAILSMKLVAGCPIKFMSTGEKPEDLDDFYPDRIA 290

Query: 308 AVITGCLD 315
             +    D
Sbjct: 291 RRMLNMGD 298


>gi|1711511|sp|P49969|SR542_HORVU RecName: Full=Signal recognition particle 54 kDa protein 2;
           Short=SRP54
 gi|1020002|gb|AAA79355.1| signal recognition particle 54 kDa subunit [Hordeum vulgare]
 gi|326510077|dbj|BAJ87255.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 497

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 139/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   +  + ++  +D+ V      E+   L++SD+   + + +   +      
Sbjct: 3   LAQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++       + +      +  ML P  KP       +P V++ VG+ G GKTT   K 
Sbjct: 63  ETLAAGTNKRRIIQQAVFTELCNMLDP-GKPAFTPKKGKPSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + 
Sbjct: 122 AYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLERFRK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++IIDT+GR    + L   + ++    K      P  V+ V+D + GQ A  Q + 
Sbjct: 182 ENSDLIIIDTSGRHKQEAALFEEMRQVAEATK------PDLVIFVMDGSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK+DG A+GGG +  V   K PV F+G GE I++ E F  K F + + 
Sbjct: 236 FKQSASVGAVIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDL 300


>gi|327183816|gb|AEA32263.1| signal recognition particle-docking protein FtsY [Lactobacillus
           amylovorus GRL 1118]
          Length = 439

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 113/316 (35%), Positives = 182/316 (57%), Gaps = 13/316 (4%)

Query: 2   SNQKVASESLSWIRKL-TKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           ++++ +S+      KL  KG   T+      +    +  R +D+   ++LEDLLI SD+G
Sbjct: 119 NDEEKSSDEEDAQEKLYEKGLEKTNKGFGARLNAFFARFRSVDEDFFDDLEDLLIESDVG 178

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--------SKPFNWDFSHRP 111
              A+++ +EL  +   ++   +    D+ ++I + L+ L         +   +D   +P
Sbjct: 179 FETAEQLTDELREEAKLQNAKSRD---DLKQVIVEKLVDLYDQGGQGKDEKLAYDPDAKP 235

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +V L VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL+ W  R     V 
Sbjct: 236 NVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLEEWGKRVGVPVVT 295

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            +  +D A++ Y+A ++A  ++ D L++DTAGRL N   LMA + K+ R +K+L P  P 
Sbjct: 296 GKEKADPASVVYDATERAIKEQADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPEQPA 355

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I    K+PV  +G+
Sbjct: 356 ETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMKLPVKLVGL 415

Query: 292 GEGINDLEPFVAKDFS 307
           GE   DL  F A +++
Sbjct: 416 GEKAEDLADFDAANYA 431


>gi|293400484|ref|ZP_06644629.1| signal recognition particle-docking protein FtsY
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305510|gb|EFE46754.1| signal recognition particle-docking protein FtsY
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 322

 Score =  245 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 167/308 (54%), Gaps = 2/308 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIG 59
           +S  K    S     +   G   +     E I  + +    +D+   EEL  +L+ +DIG
Sbjct: 4   LSKLKNTFSSKKDGDRYLSGLNKSKKSFSERIRRLAVGFAGVDEAFLEELMIVLLEADIG 63

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           +  AQKIV+E+  +   + +     + D + E++  M            +  P VIL+VG
Sbjct: 64  IKTAQKIVDEVENRAMDRKLKKFNEITDCLIEVMRDMYCAKEDAPFHKNTDGPTVILMVG 123

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT   KL+K+  + G  V LAA DTFR+ AIDQL  WA R     +    G D 
Sbjct: 124 VNGSGKTTTTAKLTKRFQEEGSSVALAAADTFRAGAIDQLATWAQRLDVPCIKGREGGDP 183

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           +A   +A +  +  ++D LI DTAGRL N + LM  + KM RV++R  P APH V  VLD
Sbjct: 184 SAALVDACRYVKEHQIDYLIGDTAGRLQNKANLMKELEKMRRVIEREIPGAPHEVWLVLD 243

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN + Q ++F      TG+I+TK+DGTA+GG +I I     +PV ++G+GE ++DL
Sbjct: 244 ATTGQNGISQAQIFLETTNVTGIILTKLDGTAKGGIVIAIREQLGLPVKYIGLGETVDDL 303

Query: 299 EPFVAKDF 306
            PF    +
Sbjct: 304 RPFDIDSY 311


>gi|216264790|ref|ZP_03436782.1| signal recognition particle protein [Borrelia burgdorferi 156a]
 gi|221217919|ref|ZP_03589386.1| signal recognition particle protein [Borrelia burgdorferi 72a]
 gi|223889344|ref|ZP_03623930.1| signal recognition particle protein [Borrelia burgdorferi 64b]
 gi|224533336|ref|ZP_03673930.1| signal recognition particle protein [Borrelia burgdorferi CA-11.2a]
 gi|226320468|ref|ZP_03796034.1| signal recognition particle protein [Borrelia burgdorferi 29805]
 gi|215981263|gb|EEC22070.1| signal recognition particle protein [Borrelia burgdorferi 156a]
 gi|221192225|gb|EEE18445.1| signal recognition particle protein [Borrelia burgdorferi 72a]
 gi|223885030|gb|EEF56134.1| signal recognition particle protein [Borrelia burgdorferi 64b]
 gi|224513501|gb|EEF83858.1| signal recognition particle protein [Borrelia burgdorferi CA-11.2a]
 gi|226234110|gb|EEH32825.1| signal recognition particle protein [Borrelia burgdorferi 29805]
 gi|312148436|gb|ADQ31095.1| signal recognition particle protein [Borrelia burgdorferi JD1]
 gi|312149665|gb|ADQ29736.1| signal recognition particle protein [Borrelia burgdorferi N40]
          Length = 444

 Score =  245 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S     +  I  +     ++D       E +++ L+ +D+ + V ++ +  ++ +   
Sbjct: 2   LESLGSNFRNFINYLSGKSTINDKNIAEAIEIIKNSLVDADVNLRVIRRFLNSIIEESKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V        + +  V++ + K L   +   +   +++   IL++G+ G GKTT   KL
Sbjct: 62  VKVLRGIDPKSQFIKIVNDNLVKFLGGKNYELSLHPANKQSYILMLGLQGSGKTTTCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S K+     KV+L A DTFR+AA++QLKI   +        E   D   +   + K A++
Sbjct: 122 SLKLKKENRKVLLVAADTFRAAAVEQLKILGGQVGVPVFSIEGEKDPIKIVKASMKFAES 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DT GRL   S+L+  I K+  +L       P   + V+D+  GQ A+   + 
Sbjct: 182 NFFDSVIVDTRGRLEIESLLVEEIKKIKGIL------RPAETILVVDSMMGQVAVNIAKE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I +K D   RGG ++       +P+ F+GVGE I DL+ F  +  ++ I 
Sbjct: 236 FNENVGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKFIGVGEKIEDLDSFYPERIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|169853092|ref|XP_001833227.1| signal recognition particle protein [Coprinopsis cinerea
           okayama7#130]
 gi|116505605|gb|EAU88500.1| signal recognition particle protein [Coprinopsis cinerea
           okayama7#130]
          Length = 574

 Score =  245 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 149/309 (48%), Gaps = 21/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    KL   ++ +  +  +D    D   +E+   L+ SD+ V +   + +++  K  A
Sbjct: 3   LADLGRKLNSALSSLNRAPVIDEKVLDATLKEITAALLESDVNVKLVASLRQKVKAKVKA 62

Query: 77  --------KDVSVQRVL--YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
                   K+ S ++ L    V + +  ++ P  +P+      R +VI+ VG+ G GKTT
Sbjct: 63  ALDGQGEKKEPSNKKHLIQKAVFDELVALVDPGVEPYK-PVKGRTNVIMAVGLQGNGKTT 121

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+      G K  +   DTFR+ A DQ +    +    +  S   ++  ++A +  
Sbjct: 122 TCTKLAAYYQKRGFKSAIVCADTFRAGAFDQTRQSCTKAKIAYFGSYTETNPVSIAQQGV 181

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++ + ++ +V+I+DT+GR      L   + ++   +K      P   + VLDA+ GQ A 
Sbjct: 182 QKFKKERFEVVIVDTSGRHKQERELFGEMIEISEAVK------PDMTVLVLDASIGQAAE 235

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F   A    +I+TKMDG A+GGG I  V   K P+ FLGVGE ++DL+ F  + F
Sbjct: 236 GQAKAFKESADFGAIIVTKMDGHAKGGGAISAVAATKTPIIFLGVGEHLHDLDRFSPQPF 295

Query: 307 SAVITGCLD 315
            + + G  D
Sbjct: 296 ISKLLGLGD 304


>gi|312194947|ref|YP_004015008.1| signal recognition particle-docking protein FtsY [Frankia sp.
           EuI1c]
 gi|311226283|gb|ADP79138.1| signal recognition particle-docking protein FtsY [Frankia sp.
           EuI1c]
          Length = 400

 Score =  245 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 110/313 (35%), Positives = 166/313 (53%), Gaps = 4/313 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
              +V + S   + +L    A +      G+  ++S   L D   +++E  L+ +D+GV 
Sbjct: 86  PAHEVPAPSAGRLVRLRARLARSQSSFGRGLLALLSGDDLTDEDWDDVESTLLLADVGVT 145

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              ++V  L  +           + D+   EL+ ++     +        RP V+LVVGV
Sbjct: 146 ATSELVAALKERTAVLGARSWSDVRDMLRDELLAQIGTTADRSLRTAADGRPGVLLVVGV 205

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT  GK+++ +   G  V+L A DTFR+AA DQL+ W  R  A  V    G D A
Sbjct: 206 NGTGKTTTCGKIARLLVADGKSVVLGAADTFRAAAADQLETWGGRVGAVTVRGAEGGDPA 265

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A K+  A   D ++IDTAGRLH    LM  + K+ RV+ +  P     V+ VLDA
Sbjct: 266 SVAFDAVKRGIADGADAVVIDTAGRLHTKVGLMDELSKIKRVVTKQSP--VDEVILVLDA 323

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQNAL Q  +F      TG+ +TK+DGTA+GG +I +     +PV  +G+GEG +DL 
Sbjct: 324 TTGQNALVQARVFTEAVDITGVALTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLA 383

Query: 300 PFVAKDFSAVITG 312
           PF  + F   + G
Sbjct: 384 PFEPEGFVDALLG 396


>gi|293365544|ref|ZP_06612253.1| cell division protein FtsY [Streptococcus oralis ATCC 35037]
 gi|307703501|ref|ZP_07640443.1| signal recognition particle-docking protein FtsY [Streptococcus
           oralis ATCC 35037]
 gi|291315912|gb|EFE56356.1| cell division protein FtsY [Streptococcus oralis ATCC 35037]
 gi|307622908|gb|EFO01903.1| signal recognition particle-docking protein FtsY [Streptococcus
           oralis ATCC 35037]
          Length = 433

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 176/314 (56%), Gaps = 7/314 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +++     +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 118 EEELPQVEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 177

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVV 117
           VA  + EEL  +   ++      L  V  +I K++    K  N+D    F     V+L V
Sbjct: 178 VASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQDGLTVMLFV 235

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 236 GVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKAD 295

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     L
Sbjct: 296 PASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLAL 355

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D
Sbjct: 356 DASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDD 415

Query: 298 LEPFVAKDFSAVIT 311
           +  F +++F   + 
Sbjct: 416 IGEFNSENFMKGLL 429


>gi|299142906|ref|ZP_07036033.1| signal recognition particle protein [Prevotella oris C735]
 gi|298575635|gb|EFI47514.1| signal recognition particle protein [Prevotella oris C735]
          Length = 449

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 141/305 (46%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L+     +    ++ +       +++   L+ +D+   VA+   + +  K   
Sbjct: 2   FENLSDRLERSFKILKGEGQITEINVAETLKDVRRALLDADVNFKVAKSFTDTVKQKAMG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  V + +  ++    +  +      P VIL+ G+ G GKTT  GKL
Sbjct: 62  MNVLTAVKPGQLMVKIVHDELADLMGG--ETVDIKLEGHPAVILMSGLQGSGKTTFSGKL 119

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  + +   K  L  A D +R AAI+QLK+  ++            D   +A  A ++A+
Sbjct: 120 ANLLKNKKNKKPLLVACDVYRPAAIEQLKVVGEQIGVPVYSEPESKDVLTIANNAVREAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK  DV+I+DTAGRL  +  +M  I  +   L       P   L V+D+ TGQ+A+   +
Sbjct: 180 AKGNDVVIVDTAGRLAVDEEMMTEIANLKNALH------PDETLFVVDSMTGQDAVNTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+      G+++TK+DG  RGG  + I      P+ F+G GE +  ++ F     +  I
Sbjct: 234 EFNDRLDFDGVVLTKLDGDTRGGAALSIRTVVTKPIKFVGTGEKMEAIDAFHPMRMADRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|218249508|ref|YP_002375194.1| signal recognition particle protein [Borrelia burgdorferi ZS7]
 gi|226321392|ref|ZP_03796919.1| signal recognition particle protein [Borrelia burgdorferi Bol26]
 gi|218164696|gb|ACK74757.1| signal recognition particle protein [Borrelia burgdorferi ZS7]
 gi|226233188|gb|EEH31940.1| signal recognition particle protein [Borrelia burgdorferi Bol26]
          Length = 444

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S     +  I  +     ++D       E +++ L+ +D+ + V ++ +  ++ +   
Sbjct: 2   LESLGSNFRNFINYLSGKSTINDKNIAEAIEIIKNSLVDADVNLRVIRRFLNSIIEESKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V        + +  V++ + K L   +   +   +++   IL++G+ G GKTT   KL
Sbjct: 62  VKVLRGIDPKSQFIKIVNDNLVKFLGGKNYELSLHPANKQSYILMLGLQGSGKTTTCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S K+     KV+L A DTFR+AA++QLKI   +        E   D   +   + K A++
Sbjct: 122 SLKLKKENRKVLLVAADTFRAAAVEQLKILGGQVGVPVFSIEGEKDPIKIVKASMKFAES 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DT GRL   S+L+  I K+  +L       P   + V+D+  GQ A+   + 
Sbjct: 182 NFFDSVIVDTRGRLEIESLLVEEIKKIKGIL------RPAETILVVDSMMGQVAVNIAKE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I +K D   RGG ++       +P+ F+GVGE I DL+ F  +  ++ I 
Sbjct: 236 FNENVGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKFIGVGEKIEDLDSFYPERIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|217034229|ref|ZP_03439647.1| hypothetical protein HP9810_2g8 [Helicobacter pylori 98-10]
 gi|216943289|gb|EEC22751.1| hypothetical protein HP9810_2g8 [Helicobacter pylori 98-10]
          Length = 448

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGIAYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|306825132|ref|ZP_07458474.1| cell division protein FtsY [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432568|gb|EFM35542.1| cell division protein FtsY [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 433

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 176/314 (56%), Gaps = 7/314 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +K+     +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 118 EEKLPQVEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 177

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVV 117
           VA  + EEL  +   ++      L  V  +I K++    K  N+D    F     V+L V
Sbjct: 178 VASNLTEELRYEAKLENAKKPEALRRV--IIEKLVELYEKDGNYDEQIHFQDGLTVMLFV 235

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 236 GVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKAD 295

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     L
Sbjct: 296 PASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLAL 355

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D
Sbjct: 356 DASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDD 415

Query: 298 LEPFVAKDFSAVIT 311
           +  F +++F   + 
Sbjct: 416 IGEFNSENFMKGLL 429


>gi|125552939|gb|EAY98648.1| hypothetical protein OsI_20572 [Oryza sativa Indica Group]
          Length = 483

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 136/305 (44%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   +  + ++  +DD        E+   L++SD+ + +   +   +      
Sbjct: 3   LAQLGGSISRALAQMSNATVIDDKAFADCLHEIARALLQSDVQIRMVSDMRANIRRAVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ML P  KP       +P V++ VG+ G GKTT   K 
Sbjct: 63  DALPAGTNKRRIIQQAVFAELCNMLDP-GKPSFTPTKGKPSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    +  S + SD   +A E  ++ + 
Sbjct: 122 AHYHQLKGFKPSLVCADTFRAGAFDQLKQNATKAKIPYYGSYMESDPVKIAVEGVERFRK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR    + L   + ++    K      P  V+ V+D + GQ A  Q + 
Sbjct: 182 EKSDLIIVDTSGRHKQEAALFEEMRQVAEATK------PDLVIFVMDGSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK+DG A+GGG +  V   K PV F+G GE + D E F  K F + + 
Sbjct: 236 FKQSASVGAVIVTKLDGHAKGGGALSAVAATKSPVVFIGTGEHMQDFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDL 300


>gi|115464807|ref|NP_001056003.1| Os05g0509500 [Oryza sativa Japonica Group]
 gi|33235565|dbj|BAC80140.1| signal recognition particle 54kDa subunit [Oryza sativa Japonica
           Group]
 gi|48475202|gb|AAT44271.1| putative signal recognition particle 54 KD protein (SRP54) [Oryza
           sativa Japonica Group]
 gi|113579554|dbj|BAF17917.1| Os05g0509500 [Oryza sativa Japonica Group]
 gi|215697189|dbj|BAG91183.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222632180|gb|EEE64312.1| hypothetical protein OsJ_19149 [Oryza sativa Japonica Group]
          Length = 483

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 136/305 (44%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   +  + ++  +DD        E+   L++SD+ + +   +   +      
Sbjct: 3   LAQLGGSISRALAQMSNATVIDDKAFADCLHEIARALLQSDVQIRMVSDMRANIRRAVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ML P  KP       +P V++ VG+ G GKTT   K 
Sbjct: 63  DALPAGTNKRRIIQQAVFAELCNMLDP-GKPSFTPTKGKPSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    +  S + SD   +A E  ++ + 
Sbjct: 122 AHYHQLKGFKPSLVCADTFRAGAFDQLKQNATKAKIPYYGSYMESDPVKIAVEGVERFRK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR    + L   + ++    K      P  V+ V+D + GQ A  Q + 
Sbjct: 182 EKSDLIIVDTSGRHKQEAALFEEMRQVAEATK------PDLVIFVMDGSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK+DG A+GGG +  V   K PV F+G GE + D E F  K F + + 
Sbjct: 236 FKQSASVGAVIVTKLDGHAKGGGALSAVAATKSPVVFIGTGEHMQDFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDL 300


>gi|307637821|gb|ADN80271.1| Signal recognition particle [Helicobacter pylori 908]
          Length = 448

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLSGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVF-HEENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|297380328|gb|ADI35215.1| signal recognition particle protein [Helicobacter pylori v225d]
          Length = 448

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSASAFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|20095048|ref|NP_614895.1| Signal recognition particle GTPase [Methanopyrus kandleri AV19]
 gi|23822175|sp|Q8TUY9|SRP54_METKA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|19888324|gb|AAM02825.1| Signal recognition particle GTPase [Methanopyrus kandleri AV19]
          Length = 447

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 151/303 (49%), Gaps = 18/303 (5%)

Query: 26  LKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
            +L E    I  +  +D+   +E+    +  L+ +D+ V +  ++ + +  +   ++   
Sbjct: 6   DRLAEITKKIKGASIIDEDFVKEVVRDVQRALLEADVDVKLVLELSKRIEKRALEEEPPA 65

Query: 82  -----QRVLYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                  +L  V E + ++L    ++  + D S   +VI++VG+ G+GKTT   KL++ +
Sbjct: 66  GVPKRDYLLRIVYEELVELLGGEKTEGLDIDLSRDVNVIMLVGLYGMGKTTTAAKLARYL 125

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G +V L   D +R AA +QL+  A+         E   DA  +A +  +  + +  D
Sbjct: 126 QRKGYRVGLVGADPYRPAAGEQLRQLAEEVDVPVHV-EDVDDAVEMAVKGVEALKDE-CD 183

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+I+DTAGR   +  L+  + +M   ++      PH VL VLDAT GQ A    E FH  
Sbjct: 184 VVIVDTAGRDRLSEDLIDELREMAERIE------PHEVLLVLDATVGQKAGDHAEAFHEA 237

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              TG+++TK+D  A+GGG +  V     P+ F+G GE ++DLE F  + F A + G  D
Sbjct: 238 VQLTGVVITKLDTAAKGGGALSAVARTGAPIKFVGTGERVDDLEEFNPRSFVARLLGIGD 297

Query: 316 YGE 318
             E
Sbjct: 298 IDE 300


>gi|327389479|gb|EGE87824.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae GA04375]
          Length = 401

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 167/300 (55%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 98  EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 157

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+       S   +  F     V+L VGVNGVGKTT IGKL
Sbjct: 158 AKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKL 217

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 218 AHRYKRTGKKVMLVAADTFRTGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVA 277

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+TGQNAL Q + 
Sbjct: 278 EGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKE 337

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   + 
Sbjct: 338 FSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKGLL 397


>gi|108563516|ref|YP_627832.1| signal recognition particle protein [Helicobacter pylori HPAG1]
 gi|107837289|gb|ABF85158.1| signal recognition particle protein [Helicobacter pylori HPAG1]
          Length = 448

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 150/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++  A  +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKASGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|327294833|ref|XP_003232112.1| signal recognition particle 54K protein [Trichophyton rubrum CBS
           118892]
 gi|326466057|gb|EGD91510.1| signal recognition particle 54K protein [Trichophyton rubrum CBS
           118892]
          Length = 534

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 143/306 (46%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   ++D+  S  +D    D + +E+   L+ +D+ V + Q++ + +      
Sbjct: 3   LQDLGRRINAAVSDLTRSNAVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQL 62

Query: 77  KDVSVQRVLYDVSEL-----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ++ P ++PF      + +VI++VG+ G GKTT   KL
Sbjct: 63  PSIPPAVNKKRLIQKAVFDQLVALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D   ++ E   + + 
Sbjct: 122 ARHYQTKGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ D++I+DT+GR      L A + ++   +K      P   + VLD+T GQ A  Q   
Sbjct: 182 ERFDIIIVDTSGRHRQEEDLFAEMTQIQSAIK------PDQTIMVLDSTIGQAAETQSAA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F + A    +I+TK DG A GGG I  V   + P+ FLG GE + DLE F  + F   + 
Sbjct: 236 FKSAADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPRPFVQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|300361931|ref|ZP_07058108.1| cell division protein FtsY [Lactobacillus gasseri JV-V03]
 gi|300354550|gb|EFJ70421.1| cell division protein FtsY [Lactobacillus gasseri JV-V03]
          Length = 446

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 169/299 (56%), Gaps = 6/299 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            +  KG   T+      +    +  R +D+   ++LEDLLI SD+G   A+++ + L  +
Sbjct: 140 ERYDKGLEKTNHSFGARLNAFFAKFRTVDEDFFDDLEDLLIESDVGFETAEELTDSLRDE 199

Query: 74  RYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              ++      L  V      ++  K           D   +P+V L VGVNG GKTT I
Sbjct: 200 AKLQNAKSHDDLKQVIVEKLVDIYDKGGEGKDSKLADDPEAKPNVYLFVGVNGAGKTTTI 259

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K++ D+G  VM+ A DTFR+ A++QL  W  R   + V     +D A++ Y+  K+
Sbjct: 260 GKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVEVVTGPEKADPASVVYDGVKK 319

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ + +D L++DTAGRL N   LM+ + K+ R +K++ P  P+ VL VLD +TGQNAL Q
Sbjct: 320 AKDRGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPDQPNEVLLVLDGSTGQNALLQ 379

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE ++DL  F A+ F+
Sbjct: 380 AKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKLVGLGEKVDDLANFDAEKFA 438


>gi|328772629|gb|EGF82667.1| hypothetical protein BATDEDRAFT_86146 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 565

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 132/276 (47%), Gaps = 12/276 (4%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSK 101
           + + +E+   L+ SD+ V + Q + + + +    +++S        + + I   L  L  
Sbjct: 29  EAILKEICGALLESDVNVRLVQSLRKNIKSIVNLQELSSGINKKRIIQKAIFDELCKLVD 88

Query: 102 PFN-----WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           P            +P+VI+ VG+ G GKTT   K++      G +  L   DTFR+ A D
Sbjct: 89  PGQGVVAFKPRKGKPNVIMFVGLQGSGKTTTCTKMAYYYQRKGYRTCLVCTDTFRAGAFD 148

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK  A +    +  S   SD   LA E   + + +  +V+I+DT+GR    + L   + 
Sbjct: 149 QLKQNATKAKIPYYGSYTESDPVQLAMEGVDKFKVEGFEVIIVDTSGRHRQETELFQEMQ 208

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           ++  V+K      P +V+ VLD T GQ A      F        +++TKMDG A+GGG I
Sbjct: 209 QISNVIK------PDNVVFVLDGTIGQAADAHARAFQETVDIGSIVITKMDGHAKGGGAI 262

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             V     P+ F+G GE I+DLE F ++ F   + G
Sbjct: 263 SAVAATGSPILFIGTGEHIHDLEIFKSQSFVRKMLG 298


>gi|289596592|ref|YP_003483288.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Aciduliprofundum boonei T469]
 gi|289534379|gb|ADD08726.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Aciduliprofundum boonei T469]
          Length = 449

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 91/301 (30%), Positives = 149/301 (49%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S    L+  I  I  +  +D+ + +E    ++  L+R+D+ V +A K+ + +  +   
Sbjct: 2   LDSLGESLRNTIRKISKAGYVDESLIKEVVRDIQRALLRADVEVHLALKLSKNVERRALE 61

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +         D + ++I++ L+ +      + + +P  +++VG+ G GKTT  GKL++  
Sbjct: 62  EKPPSGMSHRDFLIKIIYEELVAILGK-EKEVALKPQKLMLVGLYGQGKTTTAGKLARYF 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              GL V L A D  R AA +QLK   ++ +          DA  +A EA K+ +     
Sbjct: 121 HKKGLSVALIACDVHRPAAYEQLKQIGEQLNVPVFGIPGEKDARKIAREAVKKMKD--YQ 178

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I DT+GR      L+  I  +  +++      P  +  VLDAT GQ A +Q + FH  
Sbjct: 179 VQIFDTSGRHALEDDLIEEIKDLKEIIQ------PDEIFLVLDATIGQQAGKQAKAFHDA 232

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G TG+I+TKMDG+A+GGG +  V     PV F+G GE + DLE F    F + + G  D
Sbjct: 233 VGVTGVIITKMDGSAKGGGALSAVAATGAPVVFIGTGEHLEDLEHFNPTRFISRLLGMGD 292

Query: 316 Y 316
            
Sbjct: 293 L 293


>gi|261839880|gb|ACX99645.1| signal recognition particle protein [Helicobacter pylori 52]
          Length = 448

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGVALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|308184893|ref|YP_003929026.1| signal recognition particle protein [Helicobacter pylori SJM180]
 gi|308060813|gb|ADO02709.1| signal recognition particle protein [Helicobacter pylori SJM180]
          Length = 448

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 150/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLNALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I+    +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGIIYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|317012929|gb|ADU83537.1| signal recognition particle protein [Helicobacter pylori
           Lithuania75]
          Length = 448

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVLI+
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLIV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|302865875|ref|YP_003834512.1| signal recognition particle-docking protein FtsY [Micromonospora
           aurantiaca ATCC 27029]
 gi|315502420|ref|YP_004081307.1| signal recognition particle-docking protein ftsy [Micromonospora
           sp. L5]
 gi|302568734|gb|ADL44936.1| signal recognition particle-docking protein FtsY [Micromonospora
           aurantiaca ATCC 27029]
 gi|315409039|gb|ADU07156.1| signal recognition particle-docking protein FtsY [Micromonospora
           sp. L5]
          Length = 396

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 172/311 (55%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +     +G+  ++S  RLD+   EE+ED LI +D+G+   +
Sbjct: 80  EVPEPTAGRLVRLRSRLSRSQNVFGKGLLGLLSRDRLDEDTWEEIEDSLITADVGIDATR 139

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPF-NWDFSHRPHVILVVGVNG 121
           +IV+ L  +           L  +  +EL++ +   L +          P V+LVVGVNG
Sbjct: 140 EIVDRLRERTRVLGTRTGEELRALLAAELVNALDPGLDRSLRTAPKEGVPAVVLVVGVNG 199

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GK+++ +   G  V+L A DTFR+AA DQL+ W  R  A+ V     +D A++
Sbjct: 200 AGKTTTCGKIARVLVADGRSVLLGAADTFRAAAADQLETWGGRVGAETVRGPEAADPASV 259

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+     VD ++IDTAGRL N   LM  +GK+ RV+++  P      L +LDATT
Sbjct: 260 AFDAVKRGIDTGVDTVLIDTAGRLQNKIGLMDELGKVKRVVEKHGP--IDETLLILDATT 317

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F      TG+++TK+DGTA+GG +I +     IPV  +G+GEG +DL PF
Sbjct: 318 GQNGLEQARVFTEAVNVTGVVLTKLDGTAKGGIVIAVQRKLGIPVKLVGLGEGKDDLAPF 377

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 378 DPAQFVDALLG 388


>gi|15612144|ref|NP_223796.1| putative signal recognition particle protein [Helicobacter pylori
           J99]
 gi|11387213|sp|Q9ZK62|SRP54_HELPJ RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|4155673|gb|AAD06659.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
           J99]
          Length = 448

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 150/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++  A  +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKAGGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVLI+
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVF-HEENKSVKEIANNALKRAKEAQFDVLIV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ F+ +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFMPERIVGRLMGAGD 291


>gi|295691479|ref|YP_003595172.1| signal recognition particle protein [Caulobacter segnis ATCC 21756]
 gi|295433382|gb|ADG12554.1| signal recognition particle protein [Caulobacter segnis ATCC 21756]
          Length = 508

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 149/309 (48%), Gaps = 15/309 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT+  +    +L      ++S + +D+ +RE +   L+ +D+ + V +  + +   
Sbjct: 1   MFDGLTERLSGVFERLGG--RGVLSEKDIDEALRE-VRVALLEADVALPVVKDFISKAKE 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
               + V        +V+  V + +  ML            + P +IL+ G+ G GKTT 
Sbjct: 58  LAGGEAVIRSVKPADQVVKIVYDGLVDMLGGDVPTGLNLALNPPSIILMAGLQGSGKTTT 117

Query: 128 IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            GKL+ ++      KV++A+ DT R AA++QL + A +   + +    G  A  +A  A 
Sbjct: 118 TGKLALRLSKTDRKKVLVASLDTRRPAAMEQLALLATQVGVESLPIVAGQSAVDIAKRAV 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+    DVLI+DTAGR   +  +M+   ++ R+        P   + V D+ TGQ+A+
Sbjct: 178 SAAKLGGYDVLILDTAGRTTLDEAMMSEAAEVARIAN------PSETILVADSLTGQDAV 231

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           R  + FH     TGLI+T+ DG  RGG  + +     +P+ FLG GE I+ L+ F A+  
Sbjct: 232 RTAKAFHERLPLTGLILTRADGDGRGGAALSMRHVTGLPIKFLGAGEKIDQLDVFDARRV 291

Query: 307 SAVITGCLD 315
           +  I G  D
Sbjct: 292 AGRILGQGD 300


>gi|207092729|ref|ZP_03240516.1| signal recognition particle protein (ffh) [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 448

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVLI+
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLIV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|294889453|ref|XP_002772820.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
 gi|239877370|gb|EER04636.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
          Length = 508

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 145/321 (45%), Gaps = 19/321 (5%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M    ++S+  S +R L K  +S + +  E +          +   +E+   L+++D+ V
Sbjct: 1   MVLNDLSSQLTSALRSLQKAASSLNEEDDEPL----------EECLKEIAKALLQADVNV 50

Query: 61  AVAQKIVEELLTKRYA-KDVSVQRVL---YDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
               K+ + + T+    +  ++ R       V + + K+L P   P       R +V++ 
Sbjct: 51  KYVSKLRQSIRTQMKLYEGAAINRHKTVRKLVFDELVKLLTPSRAPRTL-TKGRSNVVMF 109

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VG+ G GKTT   K +      G KV L   DTFR+ A DQL+  A +    F  S   +
Sbjct: 110 VGLQGSGKTTSCTKYALYYQRRGWKVALVCADTFRAGAFDQLRQNATKALIPFYGSHTIT 169

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D   +A E  +  + ++ D++I+DT+GR      L   + +    +++        V+ V
Sbjct: 170 DPVQVASEGVELFKEERYDLIIVDTSGRHKQELALFDEMKQ----VRQWGSGEADDVIFV 225

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +D+  GQ    Q   F        +I+TK+DG A+GGG +  V     P+ F+G GE ++
Sbjct: 226 MDSHIGQACSAQAAAFSNAVDVGSVIITKLDGHAKGGGALSAVAATDSPIIFIGTGEHLD 285

Query: 297 DLEPFVAKDFSAVITGCLDYG 317
           D E F  K F   + G  D  
Sbjct: 286 DFERFEVKGFVGRLLGMGDLA 306


>gi|315221415|ref|ZP_07863336.1| signal recognition particle-docking protein FtsY [Streptococcus
           anginosus F0211]
 gi|315189534|gb|EFU23228.1| signal recognition particle-docking protein FtsY [Streptococcus
           anginosus F0211]
          Length = 490

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 170/308 (55%), Gaps = 3/308 (0%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQK 65
           + +  +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  
Sbjct: 179 SIQKETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLITSDVGVQVASN 238

Query: 66  IVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + E L  +   ++     VL    + +L+             +      V+L VGVNGVG
Sbjct: 239 LTEALHQEALLENAKKPDVLRRVIIEKLVDIYEKDGQFNEKINLQDGLTVMLFVGVNGVG 298

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K   AG  VML A DTFR+ A+ QL  W  R     V     SD A++ Y
Sbjct: 299 KTTSIGKLAYKYKQAGKTVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGPEKSDPASVVY 358

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  ++A+A+ VD+L+IDTAGRL N   LMA + K+ R++KR+DP APH     LDA+TGQ
Sbjct: 359 DGMERAKAENVDILMIDTAGRLQNKDNLMAELEKIGRIIKRVDPAAPHETFLALDASTGQ 418

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +
Sbjct: 419 NALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIRQELDIPVKLIGFGEKIDDIGVFNS 478

Query: 304 KDFSAVIT 311
           ++F   + 
Sbjct: 479 ENFMKGLL 486


>gi|317177900|dbj|BAJ55689.1| signal recognition particle protein [Helicobacter pylori F16]
          Length = 448

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|315613256|ref|ZP_07888165.1| signal recognition particle-docking protein FtsY [Streptococcus
           sanguinis ATCC 49296]
 gi|315314491|gb|EFU62534.1| signal recognition particle-docking protein FtsY [Streptococcus
           sanguinis ATCC 49296]
          Length = 429

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 176/314 (56%), Gaps = 7/314 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +++     +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 114 EEELPQVEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLILSDVGVQ 173

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVV 117
           VA  + EEL  +   ++      L  V  +I K++    K  N+D    F     V+L V
Sbjct: 174 VASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQDGLTVMLFV 231

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 232 GVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKAD 291

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     L
Sbjct: 292 PASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLAL 351

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D
Sbjct: 352 DASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDD 411

Query: 298 LEPFVAKDFSAVIT 311
           +  F +++F   + 
Sbjct: 412 IGEFNSENFMKGLL 425


>gi|301167379|emb|CBW26961.1| signal recognition particle protein [Bacteriovorax marinus SJ]
          Length = 479

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 15/305 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S K  +   ++    ++ +       +++   L+ +D+   V ++ +  +  K   
Sbjct: 2   FDNLSEKFADAFKNLQGKGKISESNIEDALKQVRTALLEADVNFKVVKQFIGAVKEKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       ++ +  V++ +  ++   ++  N +       ILVVG+NG GKTT  GKL
Sbjct: 62  EKVISGVNPEEQFIKIVNDELASIMGSANEEVNLEREGIVP-ILVVGLNGQGKTTFSGKL 120

Query: 132 SKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           S  +     K +L    DTFR AA DQL   A     D+  S++ +    +A  A   A+
Sbjct: 121 SLHLKKKKNKKVLLVPVDTFRPAAKDQLITLAKSMDMDWFDSDLSTHPKLIAESAMNFAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K DV+IIDTAGRLH +  LM  I ++   L + DP     VL V DA TGQ A+   +
Sbjct: 181 ENKYDVVIIDTAGRLHVDVELMGQIKEVRDSLAKFDP----EVLMVADAMTGQEAVNVAK 236

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TG++++KMD  ARGG  + I     +P+ ++  GE + DLE F     +  I
Sbjct: 237 SFHETVNLTGVVLSKMDSDARGGAALSIRHVTGVPIKYISTGEKMKDLELFHPDRLAGRI 296

Query: 311 TGCLD 315
               D
Sbjct: 297 LDMGD 301


>gi|71755401|ref|XP_828615.1| signal recognition particle 54 kDa [Trypanosoma brucei TREU927]
 gi|70834001|gb|EAN79503.1| signal recognition particle 54 kDa [Trypanosoma brucei]
 gi|261334497|emb|CBH17491.1| signal recognition particle 54 kDa, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 487

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTK--- 73
            A    K+   I+ + S   + +D V+E L +    L+++D+ V   +++ + +  +   
Sbjct: 3   LAELGQKIGAAISKMSSKSFVGEDDVKEFLNEVARALLQADVNVKTVKELQQNVRAEVAI 62

Query: 74  -RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +++L   V   I KML P  KPF      +  +++ VG+ G GKTT   K 
Sbjct: 63  TAEAAGLNKRKMLQTAVFNGIKKMLDPGVKPF-IPAKGKTSIVMFVGLQGSGKTTSCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      GLK  L   DTFR+ A DQL+  A +    F  S   +D   +A E   + + 
Sbjct: 122 AAYFQRKGLKTGLVCADTFRAGAYDQLRQNATKAKVRFYGSLTEADPVIIAKEGVLELKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR    S L   + ++ + +K      P+ ++ V+ AT GQ    Q   
Sbjct: 182 EKYDLIIVDTSGRHKQESALFEEMKQVQQAVK------PNDIVFVMSATDGQGIEEQARQ 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE  +D E F  + F + + 
Sbjct: 236 FKEKVPIGSVIVTKLDGQAKGGGALAAVAMTKSPIVFIGTGEHFDDFELFQPESFVSRML 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDM 300


>gi|317180883|dbj|BAJ58669.1| signal recognition particle protein [Helicobacter pylori F32]
          Length = 448

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|315587040|gb|ADU41421.1| signal recognition particle protein [Helicobacter pylori 35A]
 gi|332673948|gb|AEE70765.1| signal recognition particle protein [Helicobacter pylori 83]
          Length = 448

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|210135311|ref|YP_002301750.1| signal recognition particle protein [Helicobacter pylori P12]
 gi|210133279|gb|ACJ08270.1| signal recognition particle protein [Helicobacter pylori P12]
          Length = 448

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|148993853|ref|ZP_01823255.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP9-BS68]
 gi|168489071|ref|ZP_02713270.1| cell division protein FtsY [Streptococcus pneumoniae SP195]
 gi|147927678|gb|EDK78703.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP9-BS68]
 gi|183572532|gb|EDT93060.1| cell division protein FtsY [Streptococcus pneumoniae SP195]
          Length = 406

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 114/310 (36%), Positives = 169/310 (54%), Gaps = 3/310 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVA 63
           +      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA
Sbjct: 93  ERPQAEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVA 152

Query: 64  QKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             + EEL  +   ++      L    + +L+       S   +  F     V+L VGVNG
Sbjct: 153 SNLTEELRYEAKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNG 212

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ +    G KVML A DTFR+ A+ QL  W  R     V     +D A++
Sbjct: 213 VGKTTSIGKLAHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASV 272

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+T
Sbjct: 273 VFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDAST 332

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F
Sbjct: 333 GQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEF 392

Query: 302 VAKDFSAVIT 311
            +++F   + 
Sbjct: 393 NSENFMKGLL 402


>gi|332796973|ref|YP_004458473.1| signal recognition particle-docking protein FtsY [Acidianus
           hospitalis W1]
 gi|332694708|gb|AEE94175.1| signal recognition particle-docking protein FtsY [Acidianus
           hospitalis W1]
          Length = 308

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 97/275 (35%), Positives = 150/275 (54%), Gaps = 21/275 (7%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF----- 103
           L   L+ SD+ + V  KI+E+L +    K V+      D+ EL+ K L            
Sbjct: 42  LRTELLESDVSLEVTDKILEDLKSSLIGKKVNRSE---DLDELVKKSLKNSITEILEKNK 98

Query: 104 -------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
                      S +P+VI+  GVNGVGKTT I K++  +  AGLKV+++A DTFR+AA +
Sbjct: 99  FERNLIDEIKKSPKPYVIMFFGVNGVGKTTTIAKVAYMLKKAGLKVIVSASDTFRAAAQE 158

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL I   +     V  + G D A++A++A + A+++ +DV++IDTAGR+H +  L   + 
Sbjct: 159 QLAIHCQKLEIPLVKGKYGGDPASVAFDAIQAAKSRGIDVVLIDTAGRMHVDKDLTEELK 218

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           +++R+ K      P+  L V+DA  G +AL Q + F  V    G+I+TK+D  A+GG ++
Sbjct: 219 RIVRISK------PNLKLLVIDALAGNDALEQAKYFENVVDYDGVILTKVDADAKGGVVL 272

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            +    K PV FLG G+  +DL PF    F   I 
Sbjct: 273 SLAYELKKPVIFLGTGQNYDDLIPFSVDWFIERIF 307


>gi|149194174|ref|ZP_01871272.1| Cell division transporter substrate-binding protein FtsY
           [Caminibacter mediatlanticus TB-2]
 gi|149136127|gb|EDM24605.1| Cell division transporter substrate-binding protein FtsY
           [Caminibacter mediatlanticus TB-2]
          Length = 290

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 100/292 (34%), Positives = 168/292 (57%), Gaps = 13/292 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           F     K KE +  ++ + + +   +E +E+ L+ +D+   + +KIV +L  +       
Sbjct: 5   FKKALNKTKEALQTVVGTEKKEKLSKEIIEEALLEADMDYDLVEKIVSKLPDEVSK---- 60

Query: 81  VQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
                    +L  ++L     P N  + + +P+V L++GVNG GKTT I KL+ K    G
Sbjct: 61  --------DKLRKEILWYFDTPNNKIEINDKPYVFLIIGVNGAGKTTTIAKLAHKFKKEG 112

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AAI+QL  WA+  +   + ++ G D AA+ Y+    A+AK +D+ +I
Sbjct: 113 KSVILGAADTFRAAAIEQLSKWAEIVNVPIIKTKHGHDPAAVTYDTIASAKAKGIDIALI 172

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLHN   L   + K++ V K+   +APH V+ ++D T G +A+ Q ++F  + G  
Sbjct: 173 DTAGRLHNKINLQNELKKIVNVAKKAYENAPHKVILIIDGTQGSSAINQAKVFKEIIGAD 232

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G+I+TK+DGTA+GG +  I    ++P+Y++GVGE ++DL  F  ++F   + 
Sbjct: 233 GVIITKLDGTAKGGSVFTIANELRLPIYYIGVGEKLDDLVEFNKEEFVNDLL 284


>gi|307708793|ref|ZP_07645255.1| cell division protein FtsY [Streptococcus mitis NCTC 12261]
 gi|307615159|gb|EFN94370.1| cell division protein FtsY [Streptococcus mitis NCTC 12261]
          Length = 429

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 118/302 (39%), Positives = 172/302 (56%), Gaps = 7/302 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 126 EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 185

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVVGVNGVGKTTVIG 129
              ++      L  V  +I K++    K  N+D    F     V+L VGVNGVGKTT IG
Sbjct: 186 AKLENAKKPDALRRV--IIEKLVELYEKDGNYDERIHFQDGLTVMLFVGVNGVGKTTSIG 243

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A
Sbjct: 244 KLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGAEKADPASVVFDGMERA 303

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            ++ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+TGQNAL Q 
Sbjct: 304 VSEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQA 363

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   
Sbjct: 364 KEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKG 423

Query: 310 IT 311
           + 
Sbjct: 424 LL 425


>gi|254779702|ref|YP_003057808.1| Signal recognition particle protein (SRP) [Helicobacter pylori B38]
 gi|254001614|emb|CAX29714.1| Signal recognition particle protein (SRP) [Helicobacter pylori B38]
          Length = 448

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 148/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLSGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  +  +  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKGVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGIAYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|23295846|gb|AAN12396.1| signal recognition particle 54 kDa [Trypanosoma brucei]
          Length = 487

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTK--- 73
            A    K+   I+ + S   + +D V+E   E+   L+++D+ V   +++ + +  +   
Sbjct: 3   LAELGQKIGAAISKMSSKSFVGEDDVKEFXNEVARALLQADVNVKTVKELQQNVRAEVAI 62

Query: 74  -RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +++L   V   I KML P  KPF      +  +++ VG+ G GKTT   K 
Sbjct: 63  TAEAAGLNKRKMLQTAVFNGIKKMLDPGVKPF-IPAKGKTSIVMFVGLQGSGKTTSCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      GLK  L   DTFR+ A DQL+  A +    F  S   +D   +A E   + + 
Sbjct: 122 AAYFQRKGLKTGLVCADTFRAGAYDQLRQNATKAKVRFYGSLTEADPVIIAKEGVLELKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR    S L   + ++ + +K      P+ ++ V+ AT GQ    Q   
Sbjct: 182 EKYDLIIVDTSGRHKQESALFEEMKQVQQAVK------PNDIVFVMSATDGQGIEEQARQ 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE  +D E F  + F + + 
Sbjct: 236 FKEKVPIGSVIVTKLDGQAKGGGALAAVAMTKSPIVFIGTGEHFDDFELFQPESFVSRML 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDM 300


>gi|299117528|emb|CBN75372.1| SRP54, GTPase subunit of the signal recognition particle (Partial)
           [Ectocarpus siliculosus]
          Length = 507

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 138/314 (43%), Gaps = 24/314 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 KL   +  + +   +D    +    ++   L+ SD+ V +  K+ + +  K  +
Sbjct: 3   LQELGSKLTSALRRLHTDTVVDRETVKAVVGDICRALLESDVNVQMVMKLRKNVEAKAES 62

Query: 77  -----------KDVSVQRVLYDVSELIHKMLMPLSKPFNWD---FSHRPHVILVVGVNGV 122
                        V   +    + + +   L  +  P          R +V++ VG+ G 
Sbjct: 63  LVAEQQDGGAGGGVGAAQQRRSIQKAVVDELTGMLDPKTAPYKMRKGRSNVVMFVGLQGA 122

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I K +      G KV +   DTFR+ A DQLK  A +    F  S   +D   +A
Sbjct: 123 GKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLKQNATKLRCPFYGSYSEADPVRIA 182

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            E  +Q + +K +V+I+DT+GR      L   + ++   ++      P +   ++DAT G
Sbjct: 183 DEGVQQFKQEKYEVIIVDTSGRHKQEDALFDEMKEIQEAVQ------PDNTTLIMDATQG 236

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q    Q + FH       +I+TK+DG A+GGG +  V     P+ FLG GE  +DLE F 
Sbjct: 237 QAVFDQAKAFHEAVAVGSVIITKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEAFD 296

Query: 303 AKDFSAVITGCLDY 316
           A+ F + + G  D 
Sbjct: 297 AQSFVSRLLGFGDM 310


>gi|326480631|gb|EGE04641.1| signal recognition particle protein [Trichophyton equinum CBS
           127.97]
          Length = 534

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 142/306 (46%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   ++D+  S  +D    D + +E+   L+ +D+ V + Q++ + +      
Sbjct: 3   LQDLGRRINAAVSDLTRSNAVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQL 62

Query: 77  KDVSVQRVLYDVSEL-----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ++ P ++PF      + +VI++VG+ G GKTT   KL
Sbjct: 63  PSIPPAVNKKRLIQKAVFDQLVALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D   ++ E   + + 
Sbjct: 122 ARHYQTQGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ D++I+DT+GR      L   + ++   +K      P   + VLD+T GQ A  Q   
Sbjct: 182 ERFDIIIVDTSGRHRQEEDLFTEMTQIQSAIK------PDQTIMVLDSTIGQAAETQSAA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F + A    +I+TK DG A GGG I  V   + P+ FLG GE + DLE F  + F   + 
Sbjct: 236 FKSAADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPRPFVQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|321259271|ref|XP_003194356.1| signal recognition particle 54 kDa protein [Cryptococcus gattii
           WM276]
 gi|317460827|gb|ADV22569.1| Signal recognition particle 54 kDa protein, putative [Cryptococcus
           gattii WM276]
          Length = 590

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 146/311 (46%), Gaps = 22/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELL----- 71
            A    +L      +  +  +DD     V +EL   L+ SD+ V +   +  ++      
Sbjct: 3   LADLGTRLHGAWNQLSKASVIDDKVIDSVLKELCAALLESDVNVKLVASLRTKVKAKVKK 62

Query: 72  -----TKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
                 K   ++ + + V+   V + +  ++ P ++P+      + +V++ VG+ G GKT
Sbjct: 63  SLEESEKAGGREANKKNVVQKAVFDELVALVDPGTEPYK-PVKGKTNVLMAVGIQGAGKT 121

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T   KL+      G +  L   DTFR+ A DQLK  A +    F  S   +D  A+A   
Sbjct: 122 TTCTKLAVHYQRRGFRTCLVCADTFRAGAFDQLKQNATKAKIPFYGSYTETDPVAIASLG 181

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++ + ++ DV+I+DT+GR    S L   +  +   +K      P   L VLDA+ GQ A
Sbjct: 182 VEKFRKERFDVIIVDTSGRHKQESELFEEMVAIGAAVK------PDMTLMVLDASIGQAA 235

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
             Q   F   A    +I+TK+DG A+GGG I  V   K P+ FLG GE +NDLE F  + 
Sbjct: 236 EGQSRAFKDSADFGAIIVTKLDGHAKGGGAISAVAATKTPIIFLGTGEHLNDLERFAPQP 295

Query: 306 FSAVITGCLDY 316
           F + + G  D 
Sbjct: 296 FISKLLGMGDM 306


>gi|55980405|ref|YP_143702.1| signal recognition particle-docking protein FtsY [Thermus
           thermophilus HB8]
 gi|55771818|dbj|BAD70259.1| signal recognition particle-docking protein FtsY [Thermus
           thermophilus HB8]
          Length = 304

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 118/314 (37%), Positives = 167/314 (53%), Gaps = 25/314 (7%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +    +L  G A T  +L + I          + V EELE  L+ +D+GVA  +++++E+
Sbjct: 1   MGLFDRLRAGLAKTRERLLKAI----PWGGDPEEVLEELEMALLAADVGVAATEELLKEV 56

Query: 71  LT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVG---- 123
               +R  K+V        V E + +ML P  +         RP  +  V   G      
Sbjct: 57  RASGRRDLKEV--------VKEKLVQMLEPDERRATLRKLGFRPQKLRPVEPQGHVVMVV 108

Query: 124 ------KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
                 KTT I KL +     G KV+  AGDTFR+A   QL  W  R     +    G+D
Sbjct: 109 GVNGVGKTTTIAKLGRLYQGLGKKVLFCAGDTFRAAGGAQLAEWGKRLGIPVIQGPEGAD 168

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AALA++A K  +A+ +D+L +DTAGRLH    LM  + K+ R + + DP  P  V  VL
Sbjct: 169 PAALAFDAAKARRARGLDLLFVDTAGRLHTKQGLMEELKKVKRAIAKADPGEPGEVWLVL 228

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN L Q + FH   G TG+I+TK+DGTA+GG L+PIV T K+P+ F+GVGEG +D
Sbjct: 229 DAVTGQNGLEQAKRFHEAVGLTGVIVTKLDGTAKGGVLVPIVRTLKVPIRFIGVGEGPDD 288

Query: 298 LEPFVAKDFSAVIT 311
           L+PF A+ F   + 
Sbjct: 289 LQPFDAEAFVEALL 302


>gi|323456635|gb|EGB12501.1| putative GTP binding signal recognition particle protein SRP54
           [Aureococcus anophagefferens]
          Length = 530

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 138/324 (42%), Gaps = 35/324 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   +  +      +    R+ +        ++   L+ +D+   V    VE +      
Sbjct: 35  FDKLAESITAATDVLSGKSRMTEANTKSALRDVRRSLLDADVAKVVVDGFVENVQASALD 94

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHR----------------PHVIL 115
            +V+      Q+ +  V + + +++        +                     P V+L
Sbjct: 95  GEVAEGVDPGQQFVKIVYDELKRVMGGDDDELLFSDDPEAAAKARAGLAYRDDGAPTVVL 154

Query: 116 VVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE- 173
           + G+ G GKTT   KL+ ++ +  G   ML A D +R AA++QL+I  ++          
Sbjct: 155 LCGLQGAGKTTAAAKLALRLKEEEGKTPMLVAADVYRPAAVEQLQILGEQVGVPVYAEAF 214

Query: 174 --IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                DA A+A    + A+ +  DV+I+DTAGR      LMA +  +    K      P 
Sbjct: 215 EAGAGDAVAIATAGVRAAKERGADVVIVDTAGRQVIEESLMAELRSVRAATK------PD 268

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L VLDA TGQ+A    + F      TG ++TK+DG ARGG  + +      P+ F+GV
Sbjct: 269 ETLLVLDAMTGQDAASLAKRFDDACPLTGSVLTKLDGDARGGAALSVRAVSGKPIKFVGV 328

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE + DLEPF     ++ I G  D
Sbjct: 329 GEKVGDLEPFFPARMASRILGMGD 352


>gi|6325345|ref|NP_015413.1| Srp54p [Saccharomyces cerevisiae S288c]
 gi|1711516|sp|P20424|SRP54_YEAST RecName: Full=Signal recognition particle subunit SRP54; AltName:
           Full=Signal recognition particle 54 kDa protein homolog
 gi|4542|emb|CAA35952.1| signal recognition particle [Saccharomyces cerevisiae]
 gi|172705|gb|AAA35092.1| signal recognition particle 54 kDa subunit [Saccharomyces
           cerevisiae]
 gi|1230693|gb|AAB68136.1| Srp54p: Signal recognition particle 54 kd subunit (Swiss Prot.
           accession number P20424) [Saccharomyces cerevisiae]
 gi|151942868|gb|EDN61214.1| Signal recognition particle (SRP) subunit [Saccharomyces cerevisiae
           YJM789]
 gi|256272197|gb|EEU07192.1| Srp54p [Saccharomyces cerevisiae JAY291]
 gi|259150240|emb|CAY87043.1| Srp54p [Saccharomyces cerevisiae EC1118]
 gi|285815613|tpg|DAA11505.1| TPA: Srp54p [Saccharomyces cerevisiae S288c]
 gi|323331335|gb|EGA72753.1| Srp54p [Saccharomyces cerevisiae AWRI796]
 gi|323335166|gb|EGA76456.1| Srp54p [Saccharomyces cerevisiae Vin13]
 gi|323346316|gb|EGA80606.1| Srp54p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323350224|gb|EGA84371.1| Srp54p [Saccharomyces cerevisiae VL3]
 gi|226740|prf||1604366B signal recognition particle 54kD protein
          Length = 541

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 148/311 (47%), Gaps = 22/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELL---- 71
            A    ++   + + IS+ + D     D + + +   L+ SD+ +A+  K+   +     
Sbjct: 3   LADLGKRINSAVNNAISNTQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRSQLL 62

Query: 72  -TKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILVVGVNGVGK 124
              R  K  +  +    + + +   L  L       +        + ++I+ VG+ G GK
Sbjct: 63  SENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEEKAFVPKKRKTNIIMFVGLQGSGK 122

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT   KL+   S  G KV L   DTFR+ A DQLK  A R    F  S   +D A +A E
Sbjct: 123 TTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRARIPFYGSYTETDPAKVAEE 182

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              + + +K D++I+DT+GR H    L   + ++  V+K      P+  + VLDA+ GQ 
Sbjct: 183 GINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIK------PNQTIMVLDASIGQA 236

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A +Q + F   +    +I+TKMDG ARGGG I  V     P+ F+G GE I+DLE F  K
Sbjct: 237 AEQQSKAFKESSDFGAIILTKMDGHARGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPK 296

Query: 305 DFSAVITGCLD 315
            F + + G  D
Sbjct: 297 SFISKLLGIGD 307


>gi|307718738|ref|YP_003874270.1| hypothetical protein STHERM_c10520 [Spirochaeta thermophila DSM
           6192]
 gi|306532463|gb|ADN01997.1| hypothetical protein STHERM_c10520 [Spirochaeta thermophila DSM
           6192]
          Length = 443

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 141/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISS-----RRLDDGVREELEDLLIRSDIGVAVAQ----KIVEELL 71
           F   S   ++ +  I        + +++ V E+++  L+ +D+ V V +    + ++E  
Sbjct: 2   FDRISATFQDIVRTITGKATISPKNIEEAV-EQIKYALLEADVHVRVVRRFVNQTIQEAT 60

Query: 72  TKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +R  K V+  Q+ +  + + +   L    +           +IL+ G+ G GKTT   K
Sbjct: 61  GERVLKSVTPGQQFVKILYDKLVSFLGDERQDLALKGPDTLSIILLAGLQGSGKTTTAAK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  +   G + +L A D  R AAIDQL+                 D   L   A   A+
Sbjct: 121 LALHLKKKGRRPLLVAADLARPAAIDQLETLGATIDVPVYTDRSLKDPRTLVKRALSHAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            + VD LI+DTAGR   +  LM  + +++R L       P   L V DA TGQ A+   +
Sbjct: 181 RQAVDTLIVDTAGRHQVDRELMDELSRLVRDLS------PDETLLVADAMTGQTAVDVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+   G TG+++TK D   RGG  + I      P+ F+GVGE ++DLEPF     ++ I
Sbjct: 235 AFNEAVGITGVVLTKFDSDTRGGAALSIRTITGAPIKFIGVGEKVDDLEPFYPDRIASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGMGD 299


>gi|261838478|gb|ACX98244.1| signal recognition particle protein [Helicobacter pylori 51]
          Length = 448

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSTKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|149007093|ref|ZP_01830762.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP18-BS74]
 gi|307127166|ref|YP_003879197.1| cell division protein FtsY [Streptococcus pneumoniae 670-6B]
 gi|147761397|gb|EDK68363.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP18-BS74]
 gi|306484228|gb|ADM91097.1| cell division protein FtsY [Streptococcus pneumoniae 670-6B]
 gi|332074577|gb|EGI85051.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae GA17545]
          Length = 429

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 170/312 (54%), Gaps = 3/312 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             +      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 114 EPEAPQTEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 173

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           VA  + EEL  +   ++      L    + +L+       S   +  F     V+L VGV
Sbjct: 174 VASNLTEELRYEAKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGV 233

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D A
Sbjct: 234 NGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPA 293

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA
Sbjct: 294 SVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDA 353

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+ 
Sbjct: 354 STGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIG 413

Query: 300 PFVAKDFSAVIT 311
            F +++F   + 
Sbjct: 414 EFNSENFMKGLL 425


>gi|320101305|ref|YP_004176897.1| signal recognition particle-docking protein FtsY [Desulfurococcus
           mucosus DSM 2162]
 gi|319753657|gb|ADV65415.1| signal recognition particle-docking protein FtsY [Desulfurococcus
           mucosus DSM 2162]
          Length = 296

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 159/308 (51%), Gaps = 25/308 (8%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELED---LLIRSDIGVAVAQKIVEE 69
             RKL + FA    +  +  + I++SR   + + E +E+    L+ SD+    A+ I  +
Sbjct: 1   MFRKLKEAFA----RFIDTASSILTSR---EKLLEAIEEFKLNLVASDVAYEAAEDIAAQ 53

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVG 123
           L  +     V  +    D+ E + ++L+            +   S +P  I+ +GVNGVG
Sbjct: 54  LSRRVEEGRVKRRE---DLVEALREILLGYFTNLGALDLVSLARSRKPFKIVFLGVNGVG 110

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT I K++  M   G K ++ A DTFR+ A +QLKI ++RT         G D AALAY
Sbjct: 111 KTTTIAKIAVYMRGNGFKPLMVAADTFRAGAQEQLKIHSERTGIPVFTGRYGWDPAALAY 170

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A +    +  DV +IDTAGR+H +  L+  + K++RV+K      P+  + V+DA TG 
Sbjct: 171 DAVQYGVGRGFDVFLIDTAGRMHVDVDLVNELKKVVRVVK------PNVKILVVDALTGN 224

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A+ Q   F+   G  G+++TK+D    GG  + +      P+ F+GVG+   DL+PF  
Sbjct: 225 DAVEQARFFNEAVGVDGVVVTKVDAYEEGGVPLSLAYVLGKPILFVGVGQDYKDLKPFNP 284

Query: 304 KDFSAVIT 311
            ++   + 
Sbjct: 285 IEYVDRVL 292


>gi|50555115|ref|XP_504966.1| YALI0F03839p [Yarrowia lipolytica]
 gi|54042305|sp|Q99150|SRP54_YARLI RecName: Full=Signal recognition particle 54 kDa protein homolog;
           Short=SRP54
 gi|49650836|emb|CAG77773.1| YALI0F03839p [Yarrowia lipolytica]
          Length = 536

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 145/307 (47%), Gaps = 18/307 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD---DGVREELEDLLIRSDIGVAVAQKIVEELLT--KRY 75
                 ++     ++     +D   D + +E+   L+ SD+ + +  ++ +++    K  
Sbjct: 3   LEDLGKRINGAFANLSKGGDIDEALDAMLKEVCSALLESDVNIKLVSQLRQKVKNSVKAT 62

Query: 76  AKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRP-----HVILVVGVNGVGKTTVIG 129
               S ++V+   + + +   L+ + +        +P     +V++ VG+ G GKTT   
Sbjct: 63  PNGASKKKVIQKALFDELVN-LVGVDESAASAAKFKPQKGKSNVVMFVGLQGSGKTTSCT 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+      G KV L   DTFR+ A DQLK  A +    F  S   +D  A+A E   + 
Sbjct: 122 KLAVYYQRRGFKVGLVCADTFRAGAFDQLKQNATKAKIPFFGSYTETDPVAVAAEGVAKF 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +K +++I+DT+GR    S L   +  +   +K      P S + VLDA+ GQ A  Q 
Sbjct: 182 KKEKFEIIIVDTSGRHRQESELFTEMVDIGAAVK------PDSTIMVLDASIGQAAEPQS 235

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F   +    +I+TKMDG A+GGG I  V     P+ F+G GE I+DLE F  K F + 
Sbjct: 236 RAFKDASDFGSIILTKMDGHAKGGGAISAVAATNTPIIFIGTGEHIHDLEAFSPKQFISK 295

Query: 310 ITGCLDY 316
           + G  D 
Sbjct: 296 LLGIGDL 302


>gi|322387569|ref|ZP_08061178.1| cell division protein FtsY [Streptococcus infantis ATCC 700779]
 gi|321141436|gb|EFX36932.1| cell division protein FtsY [Streptococcus infantis ATCC 700779]
          Length = 452

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 115/314 (36%), Positives = 173/314 (55%), Gaps = 3/314 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           ++ ++      +   K  +    T       +    ++ R +D+   EELE+LLI SD+G
Sbjct: 135 LAIEETPQVQETEQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVG 194

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           V VA  + EEL  +   ++      L    + +L+           N +F     V+L V
Sbjct: 195 VQVASNLTEELRYEAKLENAKKPDALRRVIIEKLVELYEKDGIYNENINFQDGLTVMLFV 254

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 255 GVNGVGKTTSIGKLANRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKAD 314

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     L
Sbjct: 315 PASVVFDGMERAVAEGIDILMIDTAGRLQNKENLMAELEKIGRIIKRVVPEAPHETFLAL 374

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D
Sbjct: 375 DASTGQNALVQAKEFSKITPVTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDD 434

Query: 298 LEPFVAKDFSAVIT 311
           +  F +++F   + 
Sbjct: 435 IGEFNSENFMKGLL 448


>gi|303291107|ref|XP_003064840.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
 gi|226453866|gb|EEH51174.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
          Length = 513

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 141/313 (45%), Gaps = 23/313 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L   +  +     +D+ + E    E+   L+++D+ V   + IV+ +     A
Sbjct: 3   LGELGTALAGALKKLGEHTVVDEEIMEACLKEVTRALLQADVNVQYVKNIVKRVNINELA 62

Query: 77  KDVSVQRVL-YDVSELIHKMLMPLS------------KPFNWDFSHRPHVILVVGVNGVG 123
             ++ +++L   V   +  ML                +         P+V++ VG+ G G
Sbjct: 63  AGLNARKLLEKAVFTELVNMLEGEGAQNAQNEGVTTKREKYAPKKGVPNVVMFVGLQGCG 122

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT   K +      G K  L   DTFR+ A DQLK  A +    F  S   +D A +A 
Sbjct: 123 KTTTCTKYAHHYQKKGFKPALVCADTFRAGAFDQLKQNATKARIPFYGSYTETDPAKIAS 182

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +  ++ +A+K D++I+DT+GR    S L   +  +   +       P   + V+D++ GQ
Sbjct: 183 DGVERFKAEKNDLIIVDTSGRHKQESALFEEMRAVAEAVN------PDMTIFVMDSSIGQ 236

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            A  Q   F        +++TK+DG A+GGG I  V   + P+ F+G GE I++ E F A
Sbjct: 237 AASDQAAAFKNTVDVGSVVVTKLDGHAKGGGAISAVAATRAPIVFIGTGEHIDEFEAFDA 296

Query: 304 KDFSAVITGCLDY 316
           K F + + G  D+
Sbjct: 297 KPFVSRLLGLGDW 309


>gi|313236259|emb|CBY11581.1| unnamed protein product [Oikopleura dioica]
          Length = 520

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTK--- 73
            A    KL   +  + +S  +++ V +    +++  L+ +D+ + + +++ + +  +   
Sbjct: 3   LADLGRKLTTALRSLGNSPVINEDVLKKCLKDVQSALLEADVNIKLVKQLTDGVKKQIDL 62

Query: 74  -RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                 ++ +RV+   V + + ++  P  KP+      R  VI+ VG+ G GKTT   KL
Sbjct: 63  DNIGTGLNKRRVIQTAVYKELCRICDPGVKPWK-PTKGRSSVIMFVGLQGSGKTTSCIKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  +   DTFR+ A DQ+K    +    F  S    D A +AY+  +  + 
Sbjct: 122 AYHYQKKGWKCAVVCADTFRAGAYDQVKQNCTKARIPFYGSLTEPDPAVIAYDGVETFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 EKFDIIIVDTSGRHKQEDSLFEEMLQVNNAVE------PDNIIFVMDASIGQACESQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+D  A+GGG +  +   + P+ F+G GE I++LEPF    F   + 
Sbjct: 236 FKDQVDVGSVIITKLDSHAKGGGALSAIAATQSPIVFIGTGEHIDELEPFETTKFIRKLL 295

Query: 312 GCLD 315
              D
Sbjct: 296 NMGD 299


>gi|307353993|ref|YP_003895044.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Methanoplanus petrolearius DSM 11571]
 gi|307157226|gb|ADN36606.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanoplanus petrolearius DSM 11571]
          Length = 441

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 137/301 (45%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  LK+ +  +     +D    + + ++L+ +L+++D+ V +   + + +  +   
Sbjct: 2   LDRLGSGLKDALKKLAGKTVIDKAAVEELVKDLQRVLLQADVNVKLVMNLSKAIKQRSLE 61

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++      + + V  ++++ L+ L      + +  P  IL+ G+ G GKTT  GKLS+  
Sbjct: 62  EEPPKGMSVREHVLRIVYQELVNLMGE-EIEVTLGPQTILMAGLQGSGKTTTTGKLSRYF 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              GL+V +   D FR  A DQLK   D+ +          +A  +     KQ +    +
Sbjct: 121 QKKGLRVGVICADVFRPGAYDQLKTLCDKVNVPCYGEPGEINAVKIVENGMKQLK--NAE 178

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           VLIIDT GR      L+        ++K  D         VLDA  GQ A  Q   FH  
Sbjct: 179 VLIIDTQGRHALEDELIDE------IIKINDLSKASHRWLVLDAALGQQAREQAARFHDA 232

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               G+I+TKMDGTA+GGG +  V      + F+G GE I+DLE F    F + + G  D
Sbjct: 233 INIDGVIITKMDGTAKGGGALSAVAETGSGIVFVGSGETIDDLERFDPDSFISRLLGMGD 292

Query: 316 Y 316
            
Sbjct: 293 L 293


>gi|304372887|ref|YP_003856096.1| Cell division protein ftsY [Mycoplasma hyorhinis HUB-1]
 gi|304309078|gb|ADM21558.1| Cell division protein ftsY [Mycoplasma hyorhinis HUB-1]
          Length = 380

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 108/304 (35%), Positives = 180/304 (59%), Gaps = 7/304 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I K   G    ++ L E + ++  S+ ++D+   E+LE++LI SDI       I++EL  
Sbjct: 68  IDKYVAGLTKANISLSEQLIELQRSKLKVDEEYFEQLEEILIMSDISPFFVDVIIDELKK 127

Query: 73  KRYAKDVSVQRVLYDVSE----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +   +++S  +++ ++       I+     ++   N     R ++IL++GVNG GKTT I
Sbjct: 128 EVKKQNISDSKLINELIADKMYTIYANRSIINTHLNIK-DGRLNIILMIGVNGSGKTTSI 186

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFK 187
            K++ ++   G K+++AAGDTFR+AA++QL+IWA+R  AD +       D  ++ Y A +
Sbjct: 187 SKIANQLKKEGKKILIAAGDTFRAAAVEQLEIWANRVGADILKPNPNEFDPGSVVYRAIE 246

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+++  DVLIIDTAGRL N   LM  + K+ +V++   P APH  L VLDATTGQN + 
Sbjct: 247 KAESENYDVLIIDTAGRLQNKVNLMNELKKVNKVIQNKYPDAPHESLLVLDATTGQNGIS 306

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F      +G+++TKMDGT++GG +  I     + V  +G+GE ++DL+ F   +F 
Sbjct: 307 QAKHFKEATPVSGIVLTKMDGTSKGGIIFSIKDELDMDVKLIGLGEKMDDLQEFNLDNFI 366

Query: 308 AVIT 311
             +T
Sbjct: 367 YALT 370


>gi|302349271|ref|YP_003816909.1| Signal recognition 54 kDa protein [Acidilobus saccharovorans
           345-15]
 gi|302329683|gb|ADL19878.1| Signal recognition 54 kDa protein [Acidilobus saccharovorans
           345-15]
          Length = 444

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 86/300 (28%), Positives = 144/300 (48%), Gaps = 11/300 (3%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
                  +++ +    + +   +    +L+  LIR+D+ VA+ +++ + +  +   ++  
Sbjct: 2   LEGLREAVRKFLGGGSTYKDSVEEFIRDLQRELIRADVNVALVKRLSDAIRQRALEQEPP 61

Query: 81  V-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                    L  V E + K+     +P + +    P VIL+VGV G GKTT  GKL++  
Sbjct: 62  PGVSRRDWFLKIVYEELVKVFGG-EEPPSVEPRKVPWVILLVGVQGSGKTTTAGKLARFY 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  G +V L   DT+R  A++QL+  A  + A F   E    A  +A    K+ +++   
Sbjct: 121 SARGYRVGLVETDTYRPGALEQLRTLAQMSGALFY-GEPAGRAEEIASRGVKELESRGAQ 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+I+DTAGR             +  + +  D  +P  V  V+DA  GQ A      FH  
Sbjct: 180 VIIVDTAGRHG----YGDEQALLDEMRRIADAVSPDEVALVVDAAIGQRAFDLARRFHEA 235

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +I+TK+DGTA+GGG++  V      V F+G GE +++LEPF  + F + I G  D
Sbjct: 236 TPIGTIIVTKLDGTAKGGGVLSAVAATGARVKFVGTGEKVDELEPFDPQGFVSRIMGLGD 295


>gi|240169624|ref|ZP_04748283.1| putative cell division protein [Mycobacterium kansasii ATCC 12478]
          Length = 429

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 171/308 (55%), Gaps = 5/308 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
                 + +L    A +       +  ++    LD+   +++ED L+ +D+G  V Q +V
Sbjct: 124 EPPEGRLERLRGRLAKSQNAFGRSMLGLLGGGDLDEDSWQDVEDTLLVADLGPVVTQSVV 183

Query: 68  EELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGK 124
            +L ++  + DV  +     V  E++ K L P+          +  P V+LVVGVNG GK
Sbjct: 184 SQLRSRLASADVRSEADARAVLREVLVKELQPIMDRSIRALPHADHPSVLLVVGVNGTGK 243

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A+ V    G+D A++A++
Sbjct: 244 TTTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAARVGAEVVRGAEGADPASVAFD 303

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A  +  A   DV++IDTAGRLH    LM  +GK+ RV+ R    A   VL VLDAT GQN
Sbjct: 304 AVDKGIAHGADVVLIDTAGRLHTKVGLMDELGKVKRVVTRR--AAVDEVLLVLDATIGQN 361

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF   
Sbjct: 362 GLAQARVFAEVVDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPA 421

Query: 305 DFSAVITG 312
            F   + G
Sbjct: 422 AFVDALLG 429


>gi|4538|emb|CAA34781.1| Srh1p [Saccharomyces cerevisiae]
          Length = 541

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 148/311 (47%), Gaps = 22/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELL---- 71
            A    ++   + + IS+ + D     D + + +   L+ SD+ +A+  K+   +     
Sbjct: 3   LADLGKRINSAVNNAISNTQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRSQLL 62

Query: 72  -TKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILVVGVNGVGK 124
              R  K  +  +    + + +   L  L       +        + ++I+ VG+ G GK
Sbjct: 63  SENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEEKAFVPKKRKTNIIMFVGLQGSGK 122

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT   KL+   S  G KV L   DTFR+ A DQLK  A R    F  S   +D A +A E
Sbjct: 123 TTSCTKLAVYYSKEGFKVGLVCADTFRAGAFDQLKQNAIRARIPFYGSYTETDPAKVAEE 182

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              + + +K D++I+DT+GR H    L   + ++  V+K      P+  + VLDA+ GQ 
Sbjct: 183 GINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIK------PNQTIMVLDASIGQA 236

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A +Q + F   +    +I+TKMDG ARGGG I  V     P+ F+G GE I+DLE F  K
Sbjct: 237 AEQQSKAFKESSDFGAIILTKMDGHARGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPK 296

Query: 305 DFSAVITGCLD 315
            F + + G  D
Sbjct: 297 SFISKLLGIGD 307


>gi|83313161|ref|YP_423425.1| Signal recognition particle GTPase [Magnetospirillum magneticum
           AMB-1]
 gi|82948002|dbj|BAE52866.1| Signal recognition particle GTPase [Magnetospirillum magneticum
           AMB-1]
          Length = 454

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L +    +     L +        E+   L+ +D+ ++V ++ +  +  +   
Sbjct: 2   FESLSSRLGKVFEKLTGRGALSEADVTDALREVRVALLEADVALSVVKEFIGRVKARAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + +   L       N      P VIL+VG+ G GKTT   K+
Sbjct: 62  AEVIKSVSPGQMVVKIVHDELIATLGTKGTELNLSAV-PPVVILMVGLQGSGKTTTSAKI 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+     KV+LA+ D +R AA  QL+I A +     +   +G    A++  A    + 
Sbjct: 121 ALKLKKEKKKVLLASLDVYRPAAQQQLQILAGQAEVGSLPIVMGEMPVAISKRALDVGRK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV+I+DTAGRLH +  LMA +  +       D   P   L V DA  GQ+A+     
Sbjct: 181 EGYDVVILDTAGRLHIDQELMAEVAAV------RDAAKPTETLLVTDAMVGQDAVTLARE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+++T++DG ARGG  + +      P+ FLG GE ++ LE F     +  I 
Sbjct: 235 FNEKVGVTGIVLTRIDGDARGGAALSMRAITGRPIKFLGAGEKLDALEVFHPDRIAGRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|1711508|sp|P49968|SR541_HORVU RecName: Full=Signal recognition particle 54 kDa protein 1;
           Short=SRP54
 gi|1020000|gb|AAA79354.1| signal recognition particle 54 kDa subunit [Hordeum vulgare]
          Length = 497

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 139/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   +  + ++  +D+ V      E+   L++SD+   + + +   +      
Sbjct: 3   LAQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++       + +      +  ML P  KP       +P V++ VG+ G GKTT   K 
Sbjct: 63  ETLAAGTNKRRIIQQAVFTELCNMLDP-GKPAFTTKKGKPSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S + SD   +A E  ++ + 
Sbjct: 122 AYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLERFRK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++IIDT+GR    + L   + ++    K      P  V+ V+D + GQ A  Q + 
Sbjct: 182 ENSDLIIIDTSGRHKQEAALFEEMRQVAEATK------PDLVIFVMDGSIGQAAFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK+DG A+GGG +  V   K PV F+G GE I++ E F  K F + + 
Sbjct: 236 FKQSASVGAVIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDL 300


>gi|309810309|ref|ZP_07704147.1| signal recognition particle-docking protein FtsY [Dermacoccus sp.
           Ellin185]
 gi|308435737|gb|EFP59531.1| signal recognition particle-docking protein FtsY [Dermacoccus sp.
           Ellin185]
          Length = 422

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 179/311 (57%), Gaps = 6/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    +   + +L +  + ++  L +G+  ++S   LDD   E++ED L+++D+GV    
Sbjct: 113 ERPESARGRMVRLRERLSRSNTALGKGLLALLSGGSLDDEAWEDVEDTLLQADLGVEATT 172

Query: 65  KIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNG 121
           +IV+ L  +      + +  +      EL+ ++   + +         RP V+LVVGVNG
Sbjct: 173 QIVDNLKRRIAVHGATDEETVSGWLHEELLAQVGPDMDRRIAASRVGDRPAVVLVVGVNG 232

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT +GKL++ +      V+L A DTFR+AA DQL+ W  R     V SE  G+D AA
Sbjct: 233 TGKTTTVGKLARVLVAEDKDVILGAADTFRAAAADQLETWGARVGVPTVRSEKEGADPAA 292

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++A K  Q  + DV+++DTAGRLHN   LM  + KM RV+++  P     VL VLDAT
Sbjct: 293 VAFDAVKAGQENECDVVLLDTAGRLHNKVGLMDELAKMKRVIEKRSP--IDEVLLVLDAT 350

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN +RQ E+F      TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL P
Sbjct: 351 TGQNGMRQAEVFGQAVDVTGVVLTKLDGTAKGGIVVNVQRELGVPVKLVGLGEGPDDLAP 410

Query: 301 FVAKDFSAVIT 311
           F  + +   + 
Sbjct: 411 FDPEAYVNAVL 421


>gi|325957093|ref|YP_004292505.1| signal recognition particle-docking protein FtsY [Lactobacillus
           acidophilus 30SC]
 gi|325333658|gb|ADZ07566.1| signal recognition particle-docking protein FtsY [Lactobacillus
           acidophilus 30SC]
          Length = 439

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 182/316 (57%), Gaps = 13/316 (4%)

Query: 2   SNQKVASESLSWIRKL-TKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           ++++ +++      KL  KG   T+      +    +  R +D+   ++LEDLLI SD+G
Sbjct: 119 NDEEKSADEEDAQEKLYEKGLEKTNKGFGARLNAFFARFRSVDEDFFDDLEDLLIESDVG 178

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--------SKPFNWDFSHRP 111
              A+++ +EL  +   ++   +    D+ ++I + L+ L         +   +D   +P
Sbjct: 179 FETAEQLTDELREEAKLQNAKSRD---DLKQVIVEKLVDLYDQGGQGKDEKLAYDPDAKP 235

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +V L VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL+ W  R     V 
Sbjct: 236 NVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLEEWGKRVGVPVVT 295

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            +  +D A++ Y+A ++A  ++ D L++DTAGRL N   LMA + K+ R +K+L P  P 
Sbjct: 296 GKEKADPASVVYDATERAIKEQADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPEQPA 355

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I    K+PV  +G+
Sbjct: 356 ETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMKLPVKLVGL 415

Query: 292 GEGINDLEPFVAKDFS 307
           GE   DL  F A +++
Sbjct: 416 GEKAEDLADFDAANYA 431


>gi|48478588|ref|YP_024294.1| signal recognition particle receptor FtsY [Picrophilus torridus DSM
           9790]
 gi|48431236|gb|AAT44101.1| signal recognition particle receptor FtsY [Picrophilus torridus DSM
           9790]
          Length = 315

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 95/319 (29%), Positives = 172/319 (53%), Gaps = 26/319 (8%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLD-----------------DGVREELEDLLIR 55
               L K  A    K  +   ++  + +++                 D   E ++++LI 
Sbjct: 1   MFDSLKKKLAGLFKKESKDDENLNVNEKVNENISNKSENQESLFIKRDEFDERVQEILIE 60

Query: 56  SDIGVAVAQKIVEEL--LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPH 112
           SD+    A++IVE L    K+ ++ +S   +  ++  +++ +L       +  +   +P+
Sbjct: 61  SDVSFESAERIVEMLKNREKKLSRKISYDDIKSNLRSVLYDVLSQAKSDLDLLNVDKKPY 120

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VIL +G+NG GKTT IGK++  + +   KV++AAGDTFR+ AI+Q+ I  ++T  + +  
Sbjct: 121 VILFIGINGTGKTTTIGKIASYLKNNNKKVVIAAGDTFRAGAIEQISIIGEKTGTEVIKH 180

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           + GSD A++AY+A + A+A+++D ++ID+AGR+  N  L++ + K+ RV        P  
Sbjct: 181 DFGSDPASVAYDAIEHARARRIDYVLIDSAGRMQTNKNLLSEMKKIKRV------ARPDL 234

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L VLD   G +A+ Q + F       G+++TK+D  ARGG +I + +  K P+ F+GVG
Sbjct: 235 TLLVLDGMIGNDAIEQAKTFMNEINFDGVVLTKLDTDARGGAVISVAMEIKKPIMFVGVG 294

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +G+ND+  F    +   I 
Sbjct: 295 QGLNDIMRFDPDWYLDKIF 313


>gi|19075709|ref|NP_588209.1| signal recognition particle subunit Srp54 [Schizosaccharomyces
           pombe 972h-]
 gi|134887|sp|P21565|SRP54_SCHPO RecName: Full=Signal recognition particle 54 kDa protein homolog;
           Short=SRP54
 gi|5096|emb|CAA35951.1| signal recognition particle [Schizosaccharomyces pombe]
 gi|173491|gb|AAA35344.1| signal recognition particle 54 kDa subunit [Schizosaccharomyces
           pombe]
 gi|4678686|emb|CAB41226.1| signal recognition particle subunit Srp54 [Schizosaccharomyces
           pombe]
          Length = 522

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/297 (29%), Positives = 139/297 (46%), Gaps = 14/297 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA    +L   + D   +  +++ +     + +   L+ +D+ V + Q++   +  K   
Sbjct: 3   FADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINV 62

Query: 77  KDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLS 132
             +         V + +   L  L  P    F     RP VI++VG+ G GKTT   KL+
Sbjct: 63  STLPQGINGKRIVQKAVFDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 GLK  L A DTFR+ A DQLK  A +    +  S   +D   +A E   + +  
Sbjct: 123 LHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKND 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           + DV+I+DT+GR      L A + ++   +       P   + +LDA+ GQ A  Q + F
Sbjct: 183 RFDVIIVDTSGRHQQEQELFAEMVEISDAI------RPDQTIMILDASIGQAAESQSKAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
              A    +I+TK+DG A+GGG +  V   K P+ F+G GE INDLE F  + F + 
Sbjct: 237 KETADFGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISK 293


>gi|225856910|ref|YP_002738421.1| cell division protein FtsY [Streptococcus pneumoniae P1031]
 gi|225724623|gb|ACO20475.1| cell division protein FtsY [Streptococcus pneumoniae P1031]
          Length = 429

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 116/312 (37%), Positives = 171/312 (54%), Gaps = 3/312 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             +      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 114 EPEAPQTEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 173

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           VA  + EEL  +   ++     VL    + +L+       S   +  F     V+L VGV
Sbjct: 174 VASNLTEELRYEAKLENAKKPDVLRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGV 233

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D A
Sbjct: 234 NGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPA 293

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA
Sbjct: 294 SVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDA 353

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+ 
Sbjct: 354 STGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIG 413

Query: 300 PFVAKDFSAVIT 311
            F +++F   + 
Sbjct: 414 EFNSENFMKGLL 425


>gi|159478459|ref|XP_001697320.1| chloroplast SRP54 subunit of signal recognition particle
           [Chlamydomonas reinhardtii]
 gi|158274478|gb|EDP00260.1| chloroplast SRP54 subunit of signal recognition particle
           [Chlamydomonas reinhardtii]
          Length = 549

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/309 (25%), Positives = 136/309 (44%), Gaps = 17/309 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L++        + +  +  +++  + +   +E+   L+ +D+ + V ++ ++++  
Sbjct: 66  MFDSLSRSIEKAQRLIGK--SGTLTAENMKEP-LKEVRRALLEADVSLPVVRRFIKKVEE 122

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL------VVGVNGVGKTT 126
           +     V   R +    + +     PL          R    +      V G  GVGKTT
Sbjct: 123 RALGTKVREGRAMGTKWKSVVN--CPLQDGLGNRGVGRARTEVGHRAACVHGARGVGKTT 180

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL+  +  A    +L A D +R AAIDQL                      +A +  
Sbjct: 181 AAGKLALYLKKAKKSCLLVATDVYRPAAIDQLVKLGAAIDVPVFEMGTDVSPVEIAKKGV 240

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+   VD +IIDTAGRL  +  +MA +  +   ++  D       L V+DA TGQ A 
Sbjct: 241 EEARRLGVDAVIIDTAGRLQVDEGMMAELRDVKSAVRPSD------TLLVVDAMTGQEAA 294

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             V  F+     +G I+TKMDG +RGG  + +      P+ F+GVGE +  LEPF  +  
Sbjct: 295 NLVRSFNEAVDISGAILTKMDGDSRGGAALSVREVSGKPIKFVGVGEKMEALEPFYPERM 354

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 355 ASRILGMGD 363


>gi|207340327|gb|EDZ68711.1| YPR088Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 541

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 148/311 (47%), Gaps = 22/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELL---- 71
            A    ++   + + IS+ + D     D + + +   L+ SD+ +A+  K+   +     
Sbjct: 3   LADLGKRINSAVNNAISNTQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRSQLL 62

Query: 72  -TKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILVVGVNGVGK 124
              R  K  +  +    + + +   L  L       +        + ++I+ VG+ G GK
Sbjct: 63  SENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEEKAFVPKKRKTNIIMFVGLQGSGK 122

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT   KL+   S  G KV L   DTFR+ A DQLK  A R    F  S   +D A +A E
Sbjct: 123 TTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRARIPFYGSYTETDPAKVAEE 182

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              + + +K D++I+DT+GR H    L   + ++  V+K      P+  + VLDA+ GQ 
Sbjct: 183 GINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIK------PNQTIMVLDASIGQA 236

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A +Q + F   +    +I+TKMDG ARGGG I  V     P+ F+G GE I+DLE F  K
Sbjct: 237 AEQQSKAFKESSDFGAIILTKMDGHARGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPK 296

Query: 305 DFSAVITGCLD 315
            F + + G  D
Sbjct: 297 SFISKLLGIGD 307


>gi|254169167|ref|ZP_04876003.1| SRP54-type protein, GTPase domain [Aciduliprofundum boonei T469]
 gi|197621902|gb|EDY34481.1| SRP54-type protein, GTPase domain [Aciduliprofundum boonei T469]
          Length = 366

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 91/301 (30%), Positives = 149/301 (49%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S    L+  I  I  +  +D+ + +E    ++  L+R+D+ V +A K+ + +  +   
Sbjct: 2   LDSLGESLRNTIRKISKAGYVDESLIKEVVRDIQRALLRADVEVHLALKLSKNVERRALE 61

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +         D + ++I++ L+ +      + + +P  +++VG+ G GKTT  GKL++  
Sbjct: 62  EKPPSGMSHRDFLIKIIYEELVAILGK-EKEVALKPQKLMLVGLYGQGKTTTAGKLARYF 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              GL V L A D  R AA +QLK   ++ +          DA  +A EA K+ +     
Sbjct: 121 HKKGLSVALIACDVHRPAAYEQLKQIGEQLNVPVFGIPGEKDARKIAREAVKKMKD--YQ 178

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I DT+GR      L+  I  +  +++      P  +  VLDAT GQ A +Q + FH  
Sbjct: 179 VQIFDTSGRHALEDDLIEEIKDLKEIIQ------PDEIFLVLDATIGQQAGKQAKAFHDA 232

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G TG+I+TKMDG+A+GGG +  V     PV F+G GE + DLE F    F + + G  D
Sbjct: 233 VGVTGVIITKMDGSAKGGGALSAVAATGAPVVFIGTGEHLEDLEHFNPTRFISRLLGMGD 292

Query: 316 Y 316
            
Sbjct: 293 L 293


>gi|168493165|ref|ZP_02717308.1| cell division protein FtsY [Streptococcus pneumoniae CDC3059-06]
 gi|183576736|gb|EDT97264.1| cell division protein FtsY [Streptococcus pneumoniae CDC3059-06]
          Length = 429

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 167/300 (55%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 126 EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 185

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+       S   +  F     V+L VGVNGVGKTT IGKL
Sbjct: 186 AKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKL 245

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 246 AHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVA 305

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+TGQNAL Q + 
Sbjct: 306 EGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKE 365

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   + 
Sbjct: 366 FSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKGLL 425


>gi|1147795|gb|AAC49735.1| Srp54p [Yarrowia lipolytica]
          Length = 536

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/307 (28%), Positives = 145/307 (47%), Gaps = 18/307 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD---DGVREELEDLLIRSDIGVAVAQKIVEELLT--KRY 75
                 ++     ++     +D   D + +E+   L+ SD+ + +  ++ +++    K  
Sbjct: 3   LEDLGKRINGAFANLSKGGDIDEALDAMLKEVCSALLESDVNIKLVSQLRQKVKNSVKAT 62

Query: 76  AKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRP-----HVILVVGVNGVGKTTVIG 129
               S ++V+   + + +   L+ + +        +P     +V++ VG+ G GKTT   
Sbjct: 63  PNGASKKKVIQKALFDELVN-LVGVDESAASAAKFKPQKGKSNVVMFVGLQGSGKTTSCT 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+      G KV L   DTFR+ A DQLK  A +    F  S   +D  A+A E   + 
Sbjct: 122 KLAVYYQRRGFKVGLVCADTFRAGAFDQLKQNATKAKIPFFGSYTETDPVAVAAEGVAKF 181

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +K +++I+DT+GR    S L   +  +   +K      P S + VLDA+ GQ A  Q 
Sbjct: 182 KKEKFEIIIVDTSGRHRQESELFTEMVDIGAAVK------PDSTIMVLDASIGQAAEPQS 235

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F   +    +I+TKMDG A+GGG I  V     P+ F+G GE I+DLE F  K F + 
Sbjct: 236 RAFKDASDFGSIILTKMDGHAKGGGAISAVAATNTPIIFIGTGEHIHDLEAFSPKQFISK 295

Query: 310 ITGCLDY 316
           + G  D 
Sbjct: 296 LLGIGDL 302


>gi|223932803|ref|ZP_03624800.1| signal recognition particle-docking protein FtsY [Streptococcus
           suis 89/1591]
 gi|302023940|ref|ZP_07249151.1| Signal recognition particle GTPase [Streptococcus suis 05HAS68]
 gi|330832992|ref|YP_004401817.1| signal recognition particle-docking protein FtsY [Streptococcus
           suis ST3]
 gi|223898512|gb|EEF64876.1| signal recognition particle-docking protein FtsY [Streptococcus
           suis 89/1591]
 gi|329307215|gb|AEB81631.1| signal recognition particle-docking protein FtsY [Streptococcus
           suis ST3]
          Length = 424

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 119/305 (39%), Positives = 169/305 (55%), Gaps = 3/305 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
             S   K  +    T       + +  ++ R +D+   EELE++LI SD+GV VA  + E
Sbjct: 116 QESEQDKYQRTLKKTRTGFGARLNEFFANFRSVDEEFFEELEEMLILSDVGVQVASTLTE 175

Query: 69  ELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           EL  +   ++      L    + +L+             +F     V+L VGVNGVGKTT
Sbjct: 176 ELRYEAKLQNAKKTDELRRVIIEKLVDIYEKDGQFSERINFQDDLTVMLFVGVNGVGKTT 235

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ K   AG KVML A DTFR+ A+ QL  W  R     V     SD A++ ++  
Sbjct: 236 SIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGPEKSDPASVVFDGV 295

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K+A A+ VD+L+IDTAGRL N   LMA + K+ R++KR  P APH  L  LDA+TGQNAL
Sbjct: 296 KRAVAEGVDILMIDTAGRLQNKENLMAELEKIGRIIKRTLPDAPHETLLALDASTGQNAL 355

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F  +   TGL++TK+DGTA+GG ++ I     IPV  +G GE I+D+  F +++F
Sbjct: 356 SQAKEFAKITPLTGLVLTKLDGTAKGGVVLAIRQELDIPVKLIGFGEKIDDIGEFKSEEF 415

Query: 307 SAVIT 311
              + 
Sbjct: 416 MRGLL 420


>gi|298735845|ref|YP_003728370.1| signal recognition particle, subunit SRP54 [Helicobacter pylori B8]
 gi|298355034|emb|CBI65906.1| signal recognition particle, subunit SRP54 [Helicobacter pylori B8]
          Length = 448

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 150/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++  A  +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKASGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSTKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVLI+
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLIV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|148985139|ref|ZP_01818378.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922584|gb|EDK73702.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP3-BS71]
 gi|301800164|emb|CBW32769.1| putative signal recognition particle 54 FtsY [Streptococcus
           pneumoniae OXC141]
          Length = 429

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 167/300 (55%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 126 EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 185

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+       S   +  F     V+L VGVNGVGKTT IGKL
Sbjct: 186 AKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKL 245

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 246 AHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVA 305

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+TGQNAL Q + 
Sbjct: 306 EGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKE 365

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   + 
Sbjct: 366 FSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKGLL 425


>gi|226739|prf||1604366A signal recognition particle 54kD protein
          Length = 522

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/297 (29%), Positives = 139/297 (46%), Gaps = 14/297 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           FA    +L   + D   +  +++ +     + +   L+ +D+ V + Q++   +  K   
Sbjct: 3   FADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINV 62

Query: 77  KDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLS 132
             +         V + +   L  L  P    F     RP VI++VG+ G GKTT   KL+
Sbjct: 63  STLPQGINGKRIVQKAVFDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 GLK  L A DTFR+ A DQLK  A +    +  S   +D   +A E   + +  
Sbjct: 123 LHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKND 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           + DV+I+DT+GR      L A + ++   +       P   + +LDA+ GQ A  Q + F
Sbjct: 183 RFDVIIVDTSGRHQQEQELFAEMVEISDAI------RPDQTIMILDASIGQAAESQSKAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
              A    +I+TK+DG A+GGG +  V   K P+ F+G GE INDLE F  + F + 
Sbjct: 237 KETADFGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISK 293


>gi|15829145|ref|NP_326505.1| cell division protein FTSY [Mycoplasma pulmonis UAB CTIP]
 gi|14090089|emb|CAC13847.1| CELL DIVISION PROTEIN FTSY [Mycoplasma pulmonis]
          Length = 373

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 105/319 (32%), Positives = 179/319 (56%), Gaps = 12/319 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGV 60
            +QK     L  ++K   G   ++    + I ++ ++  +LDD   EELE++LI SDI  
Sbjct: 49  KDQKKEIAQLESVQKFVTGLNKSNSNFSKAILELQNNHVKLDDDFFEELEEILIMSDISA 108

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-----HRPHVIL 115
            +A  I++E+  +   +++   +++ ++  ++ KM +  +     D +      R +V L
Sbjct: 109 KLALLIIDEIQREVKIQNIDDPKIISEI--IVDKMFLIYANKSFIDINLNYQEQRMNVFL 166

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEI 174
           +VGVNG GKTT I K++K+  D   K+++ AGDTFR+AA +QL+IWA+R   +    S+ 
Sbjct: 167 MVGVNGSGKTTSIAKIAKRYKDLQKKILIIAGDTFRAAASEQLEIWANRVGVEIFKASQK 226

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             + A++ Y+  + A+    D++IIDTAGRL N   LM  + K+ +++ +    +    L
Sbjct: 227 NQEPASVVYQGLEYAKNNNFDLVIIDTAGRLQNKINLMNELEKINKIINKFIGRSVDESL 286

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DATTGQN + Q   F  V   TG+++TKMDGT++GG ++ I     + V  +G+GE 
Sbjct: 287 LVIDATTGQNGVSQARSFKEVTNLTGIVLTKMDGTSKGGIVLSIKDEFDLNVKLIGLGEK 346

Query: 295 INDLEPFVAKDFSAVITGC 313
           ++DL  F    F   I G 
Sbjct: 347 MDDLVDFDLDSF---IYGM 362


>gi|313218053|emb|CBY41387.1| unnamed protein product [Oikopleura dioica]
          Length = 502

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTK--- 73
            A    KL   +  + +S  +++ V +    +++  L+ +D+ + + +++ + +  +   
Sbjct: 3   LADLGRKLTTALRSLGNSPVINEDVLKKCLKDVQSALLEADVNIKLVKQLTDGVKKQIDL 62

Query: 74  -RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                 ++ +RV+   V + + ++  P  KP+      R  VI+ VG+ G GKTT   KL
Sbjct: 63  DNIGTGLNKRRVIQTAVYKELCRICDPGVKPWK-PTKGRSSVIMFVGLQGSGKTTSCIKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  +   DTFR+ A DQ+K    +    F  S    D A +AY+  +  + 
Sbjct: 122 AYHYQKKGWKCAVVCADTFRAGAYDQVKQNCTKARIPFYGSLTEPDPAVIAYDGVETFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 182 EKFDIIIVDTSGRHKQEDSLFEEMLQVNNAVE------PDNIIFVMDASIGQACESQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+D  A+GGG +  +   + P+ F+G GE I++LEPF    F   + 
Sbjct: 236 FKDQVDVGSVIITKLDSHAKGGGALSAIAATQSPIVFIGTGEHIDELEPFETTKFIRKLL 295

Query: 312 GCLD 315
              D
Sbjct: 296 NMGD 299


>gi|15903166|ref|NP_358716.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae R6]
 gi|116516398|ref|YP_816572.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae D39]
 gi|149002612|ref|ZP_01827544.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP14-BS69]
 gi|194398069|ref|YP_002037844.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae G54]
 gi|237649944|ref|ZP_04524196.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822507|ref|ZP_04598352.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|15458750|gb|AAK99926.1| Cell division protein FtsY [Streptococcus pneumoniae R6]
 gi|116076974|gb|ABJ54694.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae D39]
 gi|147759223|gb|EDK66216.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP14-BS69]
 gi|194357736|gb|ACF56184.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae G54]
          Length = 425

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 170/312 (54%), Gaps = 3/312 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             +      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 110 EPERPQAEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 169

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           VA  + EEL  +   ++      L    + +L+       S   +  F     V+L VGV
Sbjct: 170 VASNLTEELRYEAKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGV 229

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D A
Sbjct: 230 NGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPA 289

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA
Sbjct: 290 SVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDA 349

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+ 
Sbjct: 350 STGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIG 409

Query: 300 PFVAKDFSAVIT 311
            F +++F   + 
Sbjct: 410 EFNSENFMKGLL 421


>gi|15645766|ref|NP_207943.1| signal recognition particle protein (ffh) [Helicobacter pylori
           26695]
 gi|2500881|sp|P56005|SRP54_HELPY RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|2314305|gb|AAD08194.1| signal recognition particle protein (ffh) [Helicobacter pylori
           26695]
          Length = 448

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIASNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|302835417|ref|XP_002949270.1| hypothetical protein VOLCADRAFT_74111 [Volvox carteri f.
           nagariensis]
 gi|300265572|gb|EFJ49763.1| hypothetical protein VOLCADRAFT_74111 [Volvox carteri f.
           nagariensis]
          Length = 505

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 135/308 (43%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITD-----IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            A    ++ + I+      II  + LD  V +E+   L+++D+ V     +   +  +  
Sbjct: 3   LAELGTRISKAISSMGQAMIIDEKVLD-TVLKEICTALLQADVNVKQVANLRNGVKKRVN 61

Query: 76  AKDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTV 127
             +++       V E      +  ML     P   +        H ++ VG+ G GKTT 
Sbjct: 62  IAELAAGLNKQRVIEKAVFDELCDMLDSGVDPKKLELKKEKGKQHTVMFVGLQGSGKTTT 121

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             K +      G K  L   DT+R+ A DQLK  A +    F  S   +D AA+A +   
Sbjct: 122 CTKYAYFYKKKGWKPALVCADTYRAGAFDQLKQNATKAQIPFYGSYKETDPAAIAQQGVL 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           + +    D++I+DT+GR    + L   + ++   +       P  ++ V+D + GQ A  
Sbjct: 182 RFKEDGRDLIIVDTSGRHKQEAALFEEMKQVAAAVS------PDLIIFVMDGSIGQAAFD 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F        +I+TK+DG A+GGG +  V   K P+ FLG GE ++  E F  K F 
Sbjct: 236 QAKAFKEAVEVGAVIITKLDGHAKGGGALSAVAATKSPIIFLGTGEHMDQFESFETKRFV 295

Query: 308 AVITGCLD 315
             + G  D
Sbjct: 296 QRLLGKGD 303


>gi|124028446|ref|YP_001013766.1| Signal recognition particle GTPase [Hyperthermus butylicus DSM
           5456]
 gi|123979140|gb|ABM81421.1| Signal recognition particle GTPase [Hyperthermus butylicus DSM
           5456]
          Length = 312

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 91/316 (28%), Positives = 150/316 (47%), Gaps = 25/316 (7%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEE 69
             KL            + + ++  +R L +     + +EL   L  SD+ + VA++I   
Sbjct: 3   FNKLKGVLKK----FVDSVVEVAVTRELREEDIAPLLDELVIELAESDVALEVAEEIANR 58

Query: 70  LLTKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHR------PHVILVVG 118
           L  +   + +     +  +      + I  +L    +P +     R      P  IL  G
Sbjct: 59  LREELIGRKIPRFSDVRSLVVESLEKAIVDVLSRGYQPLDLIAEARSRSPGNPLRILFFG 118

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNGVGKTT I K +      G+  ++AA DT+R+ A +QL+  A++ S  F+    G+D 
Sbjct: 119 VNGVGKTTTIAKFAYMFKQNGITPVIAAADTYRAGAQEQLRRHAEKLSVPFIGGRYGADP 178

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+A + A+A+   V++ DTAGR+H +  LM  + K+ RV K      P     V+D
Sbjct: 179 ASVVYDAIEYARARGYRVILADTAGRMHTDRDLMEELRKITRVAK------PDYRALVVD 232

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A TG +A+ Q   F    G   +I+TK+D   +GG  + +      P+ F+G G+   DL
Sbjct: 233 ALTGNDAVEQARFFDEAVGIDFIILTKVDADVKGGTALSVAAVTGKPILFVGTGQKYEDL 292

Query: 299 EPFVAKDFSAVITGCL 314
           E F  K ++  I G L
Sbjct: 293 ELFDPKRYTEKIIGEL 308


>gi|302756335|ref|XP_002961591.1| hypothetical protein SELMODRAFT_77470 [Selaginella moellendorffii]
 gi|302775590|ref|XP_002971212.1| hypothetical protein SELMODRAFT_95155 [Selaginella moellendorffii]
 gi|300161194|gb|EFJ27810.1| hypothetical protein SELMODRAFT_95155 [Selaginella moellendorffii]
 gi|300170250|gb|EFJ36851.1| hypothetical protein SELMODRAFT_77470 [Selaginella moellendorffii]
          Length = 333

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 178/310 (57%), Gaps = 7/310 (2%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR--SDIGVAVAQK 65
            ++ S I +L  GF+ T   L   + ++++   L D  +   E       SD G   A K
Sbjct: 24  EKAKSDIDRLFSGFSKTRENL-AVVDELLTYWNLSDAEKLLDELEEALLISDFGPRTAIK 82

Query: 66  IVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVG 123
           IV+ L     A  +   + +   + + I K+L   +   +    + RP VI+VVGVNG G
Sbjct: 83  IVDGLRKDVLAAKLKTGQEIKLALKKSIVKLLTSRAGSTDLKLGTRRPAVIMVVGVNGGG 142

Query: 124 KTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAAL 181
           KTT IGKL+ ++    G+K+++AAGDTFR+AA +QL++WA+RT +D V +E G    A +
Sbjct: 143 KTTTIGKLAHRLKKEKGVKILMAAGDTFRAAAKEQLEVWAERTESDIVRAEEGQKKPAPV 202

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
              A K+A A+K D+++ DT+GRLH N  LM  +    + + +    AP+ VL VLD TT
Sbjct: 203 LSRAVKRAVAEKFDIVLADTSGRLHTNFSLMDELEDCKKAIGKALAGAPNEVLMVLDGTT 262

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G N L Q   F+ V G TG ++TK+DGTARGG +  +V    IPV F+GVGEG+ DL+PF
Sbjct: 263 GLNMLPQAREFNDVVGVTGFVLTKLDGTARGGCVASVVDELGIPVKFVGVGEGLEDLQPF 322

Query: 302 VAKDFSAVIT 311
            A+ F   + 
Sbjct: 323 DAEAFVNALF 332


>gi|18394225|ref|NP_563970.1| ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA
           SUBUNIT); 7S RNA binding / GTP binding / mRNA binding /
           nucleoside-triphosphatase/ nucleotide binding
           [Arabidopsis thaliana]
 gi|586036|sp|P37106|SR541_ARATH RecName: Full=Signal recognition particle 54 kDa protein 1;
           Short=SRP54
 gi|5103829|gb|AAD39659.1|AC007591_24 Identical to gb|L19997 signal recognition particle 54 kDa subunit
           (Srp54-1) from Arabidopsis thaliana. ESTs gb|T88590 and
           gb|T20603 come from this gene
 gi|12745001|gb|AAK06880.1|AF344329_1 unknown protein [Arabidopsis thaliana]
 gi|304111|gb|AAA19728.1| signal recognition particle 54 kDa subunit [Arabidopsis thaliana]
 gi|21592315|gb|AAM64266.1| signal recognition particle 54 kDa protein 2 (SRP54), putative
           [Arabidopsis thaliana]
 gi|62320715|dbj|BAD95382.1| putative signal recognition particle 54 kDa subunit [Arabidopsis
           thaliana]
 gi|332191180|gb|AEE29301.1| Signal recognition particle protein 1 [Arabidopsis thaliana]
          Length = 479

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 140/305 (45%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    ++   I  + +   +D+        E+   L++SD+   + +K+   +      
Sbjct: 3   LAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            D++       + E      + +ML P  KP       +P V++ VG+ G GKTT   K 
Sbjct: 63  DDLAAGHNKRLIIEQAIFKELCRMLDP-GKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S   SD   +A E   + + 
Sbjct: 122 AYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR    + L   + ++    +      P  V+ V+D++ GQ A  Q E 
Sbjct: 182 EKCDLIIVDTSGRHKQAASLFEEMRQVAEATE------PDLVIFVMDSSIGQAAFEQAEA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F  K F + + 
Sbjct: 236 FKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GKGDW 300


>gi|296817061|ref|XP_002848867.1| signal recognition particle protein [Arthroderma otae CBS 113480]
 gi|238839320|gb|EEQ28982.1| signal recognition particle protein [Arthroderma otae CBS 113480]
          Length = 535

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 143/306 (46%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   ++D+  S  +D    D + +E+   L+ +D+ V + Q++ + +      
Sbjct: 3   LQDLGRRINAAVSDLTRSNTVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQL 62

Query: 77  KDVSVQRVLYDVSEL-----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ++ P ++PF      + +VI++VG+ G GKTT   KL
Sbjct: 63  PSIPPAVNKKRLIQKAVFDQLVALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D   ++ E   + + 
Sbjct: 122 ARHYQTKGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVIVSSEGVAKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ D++I+DT+GR      L A + ++   +K      P   + VLD+T GQ A  Q   
Sbjct: 182 ERFDIIIVDTSGRHRQEEDLFAEMTQIQAAIK------PDQTIMVLDSTIGQAAESQSAA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F + A    +I+TK DG A GGG I  V   + P+ FLG GE + DLE F  + F   + 
Sbjct: 236 FKSAADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPQPFIQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|154151417|ref|YP_001405035.1| signal recognition particle protein Srp54 [Candidatus Methanoregula
           boonei 6A8]
 gi|153999969|gb|ABS56392.1| GTP-binding signal recognition particle SRP54, G- domain
           [Methanoregula boonei 6A8]
          Length = 441

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 86/300 (28%), Positives = 142/300 (47%), Gaps = 14/300 (4%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
            S S  LK+ +  +     +D    D + + L+  L+ +D+ V +   + + + T+   +
Sbjct: 3   DSLSGSLKDALKKLAGKAVVDRAAVDELVKNLQRALLSADVNVKLVMDLSKAIRTRSLDE 62

Query: 78  DVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           ++     + + V  ++++ L+ L    + D    P VIL+ G+ G GKTT   K+++   
Sbjct: 63  ELPKNTNVREHVLRIVYQELVRLV-YASADLKLEPQVILMAGLQGSGKTTTTAKIARYFQ 121

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             G+KV +   DTFR  A DQL     + +     +   +DA  +  E     + +  +V
Sbjct: 122 KKGMKVGVICADTFRPGAYDQLSTLCAKINVPCFGNPKVTDARQIVREGLVAVKDQ--EV 179

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +I+DT GR      L+  I  +  + K            V+DA  GQ A  Q + FH   
Sbjct: 180 IIVDTQGRHALEPDLIQEIIDLNALTKAS------HRWLVIDAALGQQASEQAKRFHEAI 233

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           G  G+I+TKMDGTA+GGG +  V   K  + F+G GE I DLE F A  F + + G  D 
Sbjct: 234 GIDGVIITKMDGTAKGGGALSAVAETKSGIVFIGAGETIEDLERFDANGFISRLLGMGDL 293


>gi|146318841|ref|YP_001198553.1| Signal recognition particle GTPase [Streptococcus suis 05ZYH33]
 gi|146321051|ref|YP_001200762.1| Signal recognition particle GTPase [Streptococcus suis 98HAH33]
 gi|145689647|gb|ABP90153.1| Signal recognition particle GTPase [Streptococcus suis 05ZYH33]
 gi|145691857|gb|ABP92362.1| Signal recognition particle GTPase [Streptococcus suis 98HAH33]
 gi|292558502|gb|ADE31503.1| Cell division transporter substrate-binding protein FtsY
           [Streptococcus suis GZ1]
          Length = 428

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 119/305 (39%), Positives = 169/305 (55%), Gaps = 3/305 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
             S   K  +    T       + +  ++ R +D+   EELE++LI SD+GV VA  + E
Sbjct: 120 QESEQDKYQRTLKKTRTGFGARLNEFFANFRSVDEEFFEELEEMLILSDVGVQVASTLTE 179

Query: 69  ELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           EL  +   ++      L    + +L+             +F     V+L VGVNGVGKTT
Sbjct: 180 ELRYEAKLQNAKKIDELRRVIIEKLVDIYEKDGQFSEQINFQDDLTVMLFVGVNGVGKTT 239

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ K   AG KVML A DTFR+ A+ QL  W  R     V     SD A++ ++  
Sbjct: 240 SIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGPEKSDPASVVFDGV 299

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K+A A+ VD+L+IDTAGRL N   LMA + K+ R++KR  P APH  L  LDA+TGQNAL
Sbjct: 300 KRAVAEGVDILMIDTAGRLQNKENLMAELEKIGRIIKRTLPDAPHETLLALDASTGQNAL 359

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F  +   TGL++TK+DGTA+GG ++ I     IPV  +G GE I+D+  F +++F
Sbjct: 360 SQAKEFAKITPLTGLVLTKLDGTAKGGVVLAIRQELDIPVKLIGFGEKIDDIGEFKSEEF 419

Query: 307 SAVIT 311
              + 
Sbjct: 420 MRGLL 424


>gi|315639091|ref|ZP_07894259.1| cell division protein FtsY [Campylobacter upsaliensis JV21]
 gi|315480867|gb|EFU71503.1| cell division protein FtsY [Campylobacter upsaliensis JV21]
          Length = 288

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 97/296 (32%), Positives = 160/296 (54%), Gaps = 23/296 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRY 75
           F  +  K  E IT   ++ ++   + EE+   L+ +D+   + ++I+  L     + K  
Sbjct: 5   FKKSLAKTLENITKTRANHKISKDLLEEI---LLEADVAYEIVEEIIYYLPPTDEVKKAD 61

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            K V     LY+  E                 + +P V L++GVNG GKTT I KL+   
Sbjct: 62  LKRVMGAYFLYENPE---------------SSTQKPFVELILGVNGAGKTTSIAKLANLY 106

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV+L A DTFR+ AI+QL++WA++     V S  G D +A+A++   +A+A+  D
Sbjct: 107 KKQGQKVILGACDTFRAGAIEQLRLWAEKIGVQIVLSNQGHDPSAVAFDTISKAKARDFD 166

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
            +I+DTAGRL N   L   + K++R+ ++   +APH  + VLD T G   + Q + F+ +
Sbjct: 167 RVILDTAGRLQNQKNLANELEKIVRICEKAMTNAPHRKILVLDGTQGNAGILQAKAFNEL 226

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
               G+I+TK+DGTA+GG L  I    ++P++++GVGE ++DL  F A  +   + 
Sbjct: 227 IKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEKMDDLYEFDANAYLDTLL 282


>gi|146304520|ref|YP_001191836.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Metallosphaera sedula DSM 5348]
 gi|172046932|sp|A4YHL0|SRP54_METS5 RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|145702770|gb|ABP95912.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Metallosphaera sedula DSM 5348]
          Length = 446

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 14/281 (4%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLM 97
           +   ++++  LI SD+ V +   +  ++  +   +         +  +  V + +  +  
Sbjct: 24  EEFIKDIQKALISSDVQVKLVFSLTNKIKERLKKETPPSNLERREWFIKIVYDELSALFG 83

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              +P   +    P VI++VGV G GKTT  GKL+      G KV L   D +R AA++Q
Sbjct: 84  GDKEP-EVNPKSIPWVIMLVGVQGTGKTTTAGKLAYFYKKRGYKVALVGADVYRPAALEQ 142

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI--LMAGI 215
           L+    + +          DA  +A    ++  +++ +++I+DTAGR        L+  +
Sbjct: 143 LQQIGKQINVPVYGEPGSQDAVGIAKRGVEKFLSERYELVIVDTAGRHGYGEEVKLLEEM 202

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +   +K      P+ V+ V+DA+ GQ A    + FH  +    +I+TKMDGTA+GGG 
Sbjct: 203 KDIYEKIK------PNEVILVIDASLGQKAYDLAKRFHEASNVGSIIITKMDGTAKGGGA 256

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           +  V     P+ F+GVGE I++LE F  + F A I G  D 
Sbjct: 257 LSAVAATGAPIKFIGVGEKIDELEVFNPRRFVARILGMGDL 297


>gi|297623514|ref|YP_003704948.1| signal recognition particle-docking protein FtsY [Truepera
           radiovictrix DSM 17093]
 gi|297164694|gb|ADI14405.1| signal recognition particle-docking protein FtsY [Truepera
           radiovictrix DSM 17093]
          Length = 314

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 117/312 (37%), Positives = 172/312 (55%), Gaps = 13/312 (4%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +SW  +L +G   T   L   + D+     + +   ++LE  LI +D G  +A ++V E 
Sbjct: 1   MSWFDRLKRGLGKTRDVLTTDVRDL---GSVWEMPWDDLEFALIGADTGSKIAAEVVAEA 57

Query: 71  LTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVI-------LVVGVNG 121
             +R  + VS +  L    + +L    +    +   +      H +       +VVGVNG
Sbjct: 58  KRER-ERGVSFREALEKALLDQLEPDRMRQKLRRVGFTLDVTRHTVEVRGSVVMVVGVNG 116

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT I KL +  ++ G +VM AAGDTFR+AA  QL++W +R     V    GSD  A+
Sbjct: 117 VGKTTTIAKLGQYYTERGRRVMFAAGDTFRAAATAQLEVWGERLGIPTVTGPDGSDPGAV 176

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A+ A +Q +A+  D+L +DTAGRLH    LM  + K+ RV+ + DP  P  V  VLDA T
Sbjct: 177 AFNAAQQRRARGYDLLFVDTAGRLHTKHNLMEELKKVKRVIAKADPDEPKEVWLVLDAVT 236

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q + FH   G TG+I+TK+DGTA+GG L+PIV    +P+ F+GVGE   DL+P+
Sbjct: 237 GQNGLAQAKKFHEAVGLTGVIVTKLDGTAKGGILLPIVRELGLPIKFIGVGEKAEDLQPY 296

Query: 302 VAKDFSAVITGC 313
            A  +   +   
Sbjct: 297 DAAAYVRALLDM 308


>gi|326469041|gb|EGD93050.1| signal recognition particle 54K protein [Trichophyton tonsurans CBS
           112818]
          Length = 534

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 142/306 (46%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   ++D+  S  +D    D + +E+   L+ +D+ V + Q++ + +      
Sbjct: 3   LQDLGRRINAAVSDLTRSNAVDEKALDAMIKEICAALLSADVNVRLVQQLRKSIKAAVQL 62

Query: 77  KDVSVQRVLYDVSEL-----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ++ P ++PF      + +VI++VG+ G GKTT   KL
Sbjct: 63  PSIPPAVNKKRLIQKAVFDQLVALVDPHAEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D   ++ E   + + 
Sbjct: 122 ARHYQTKGFKAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVSSEGVAKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ D++I+DT+GR      L   + ++   +K      P   + VLD+T GQ A  Q   
Sbjct: 182 ERFDIIIVDTSGRHRQEEDLFTEMTQIQSAIK------PDQTIMVLDSTIGQAAETQSAA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F + A    +I+TK DG A GGG I  V   + P+ FLG GE + DLE F  + F   + 
Sbjct: 236 FKSAADFGAIIITKTDGHAAGGGAISAVAATRTPIIFLGTGEHMLDLERFAPRPFVQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|1711509|sp|P49971|SR541_SOLLC RecName: Full=Signal recognition particle 54 kDa protein 1;
           Short=SRP54
 gi|556900|emb|CAA84275.1| 54-kD signal recognition particle (SRP) specific protein [Solanum
           lycopersicum]
          Length = 496

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 138/306 (45%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   +  + ++  +D+ V  E    +   L+++D+   + + +   +      
Sbjct: 3   LAQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMSTNIKKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +D++       + +      + K+L P    F      +P V++ VG+ G GKTT   K 
Sbjct: 63  EDLAAGHNKRRIIQQAVYNELCKILDPGKPAFTLK-KGKPSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQAQ 190
           +      G K  L   DTFR+ A DQLK  A +    F  S    SD   +A +  +  +
Sbjct: 122 AYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSSYTESDPVKIAVDGVETFK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q +
Sbjct: 182 KENCDLIIVDTSGRHKQEAALFEEMRQVSEAQK------PDLVIFVMDSSIGQAAFDQAQ 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F  K F + +
Sbjct: 236 AFRQSVAVGAVIVTKMDGHAKGGGALSRVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 295

Query: 311 TGCLDY 316
            G  D 
Sbjct: 296 LGMGDL 301


>gi|317182404|dbj|BAJ60188.1| signal recognition particle protein [Helicobacter pylori F57]
          Length = 448

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|23014875|ref|ZP_00054671.1| COG0541: Signal recognition particle GTPase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 454

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/304 (28%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L +    +     L +        E+   L+ +D+ ++V ++ +  +  +   
Sbjct: 2   FESLSSRLGKVFEKLTGRGALSEADVTDALREVRVALLEADVALSVVKEFIGRVKARAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q V+  V + +   L       N +    P VIL+VG+ G GKTT   K+
Sbjct: 62  AEVIKSVSPGQMVVKIVHDELIATLGTKGTELNLNAV-PPVVILMVGLQGSGKTTTSAKI 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+     KV+LA+ D +R AA  QL+I A +     +   +G    A++  A    + 
Sbjct: 121 ALKLKKEKKKVLLASLDVYRPAAQQQLQILAGQAEVGSLPIVMGEMPVAISKRALDVGRK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV+I+DTAGRLH +  LMA +  +       D   P   L V DA  GQ+A+     
Sbjct: 181 EGYDVVILDTAGRLHIDQELMAEVAAV------RDAAKPTETLLVTDAMVGQDAVTLARE 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+++T++DG ARGG  + +      P+ FLG GE ++ LE F     +  I 
Sbjct: 235 FNEKVGVTGIVLTRIDGDARGGAALSMRAITGRPIKFLGAGEKLDALEVFHPDRIAGRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|315636325|ref|ZP_07891575.1| signal recognition particle protein [Arcobacter butzleri JV22]
 gi|315479414|gb|EFU70097.1| signal recognition particle protein [Arcobacter butzleri JV22]
          Length = 455

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 139/296 (46%), Gaps = 12/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDGVRE------ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             +   I + ++  R  D +        EL+  L+++D+     ++++  +  +     +
Sbjct: 8   DSITGSIRNAVNKIRYQDDITALNKATAELKKALLKADVHHKTTKELITAVELQTKTAGI 67

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
                L  +   + ++L           S  P  IL+ G+ G GKTT  GKL+  +    
Sbjct: 68  GQDSFLKALKSELTRLLTANGNQGFVFASTPPTTILMTGLQGSGKTTTTGKLANYLKIRK 127

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV++AA D  R AA++QLK  A +   D    +  S+   +A +A ++A  +  DVL+I
Sbjct: 128 KKVLVAACDLQRLAAVEQLKQIAAQIEVDIYFDDTESNPVKIALKAKEKAIKEHYDVLLI 187

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL  +  LM  +  +   +       P+ +  V D+ TG +A +    F    G  
Sbjct: 188 DTAGRLAIDEELMLQLKDIKDAIN------PNEIFYVADSLTGHDATKTAITFKEKIGID 241

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G+I++K DG  +GG  + I    ++P+ F+G+GE + DLE F+     + + G  D
Sbjct: 242 GVILSKYDGDTKGGVALSIANQVEVPLRFIGIGEKMPDLEVFIPDRIVSRLLGLGD 297


>gi|309804312|ref|ZP_07698389.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 11V1-d]
 gi|309805486|ref|ZP_07699531.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 09V1-c]
 gi|308163715|gb|EFO65985.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 11V1-d]
 gi|308165137|gb|EFO67375.1| signal recognition particle-docking protein FtsY [Lactobacillus
           iners LactinV 09V1-c]
          Length = 300

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 112/294 (38%), Positives = 166/294 (56%), Gaps = 11/294 (3%)

Query: 22  ASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
             TS  L E +   ++  R +D+   ++LEDLLI +D+G   A+ + +EL  +   K+V 
Sbjct: 2   KKTSNSLGEKLNSFLAQFRTIDEDFFDDLEDLLIEADVGYETAEMLTDELRNEAKLKNVK 61

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHVILVVGVNGVGKTTVIGKLSK 133
             ++L +V   I + L+ L +  N   S         P V L VGVNG GKTT IGKL+K
Sbjct: 62  DSKLLKNV---IVEKLVELYEQNNTKDSKLILKTGDMPAVFLFVGVNGAGKTTTIGKLAK 118

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           K+ DAG  VML A DTFR+ A++QLK W  R     +     +D +++ YE  + A    
Sbjct: 119 KLKDAGNSVMLVAADTFRAGAVEQLKAWGQRVDVQVISGNTNADPSSVVYEGLECAVKNH 178

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +D L++DTAGRL N   LM  + K+ R + R  P  P  +L V+D +TGQNAL Q + F 
Sbjct: 179 IDYLLVDTAGRLQNKVNLMNELDKINRTIHRKIPDQPQEILLVIDGSTGQNALNQAKEFD 238

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                TGL++TK+DG+++GG ++ I     +PV  +G+GE   DL  F A+ F+
Sbjct: 239 KTTKLTGLVLTKLDGSSKGGIVLAIRNEMSLPVKLVGLGEKAEDLAEFDAEKFA 292


>gi|148989266|ref|ZP_01820646.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925244|gb|EDK76323.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP6-BS73]
          Length = 425

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 170/312 (54%), Gaps = 3/312 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             +      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 110 EPERPQAEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 169

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           VA  + EEL  +   ++      L    + +L+       S   +  F     V+L VGV
Sbjct: 170 VASNLTEELRYEAKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGV 229

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D A
Sbjct: 230 NGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPA 289

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA
Sbjct: 290 SVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDA 349

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+ 
Sbjct: 350 STGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIG 409

Query: 300 PFVAKDFSAVIT 311
            F +++F   + 
Sbjct: 410 EFNSENFMKGLL 421


>gi|219685536|ref|ZP_03540353.1| signal recognition particle protein [Borrelia garinii Far04]
 gi|219672935|gb|EED29957.1| signal recognition particle protein [Borrelia garinii Far04]
          Length = 444

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S     K  I  +     ++D       E +++ L+ +D+ + V ++ +  ++ +   
Sbjct: 2   LESLGSNFKNFINYLSGKSTINDKNISEAIEIIKNSLVDADVNLRVVRRFLNSIIEESKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V        + +  V++ + K L   S   +    ++   IL++G+ G GKTT   KL
Sbjct: 62  IKVLRGIDPKSQFIKIVNDNLVKFLGGKSYELSLHPVNKQSYILMLGLQGSGKTTTCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S ++     KV+L A DTFR+AA++QLKI  ++            D   +   + K A++
Sbjct: 122 SLRLKKENRKVLLVAADTFRAAAVEQLKILGNQIGVPVFSLAGEKDPIKIVKASMKFAES 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D +I+DT GRL   S+L+  I K+  +LK      P   + V+D+  GQ A+   + 
Sbjct: 182 EFFDSVIVDTRGRLEVESLLVEEIKKIKDILK------PTETILVVDSMMGQVAVNIAKE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G T  I +K D   RGG ++       +P+ F+GVGE + DL+ F  +  ++ I 
Sbjct: 236 FNENVGLTSAIFSKFDSDTRGGAVLSFKSICAVPIKFIGVGERVEDLDSFYPERIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|154173993|ref|YP_001408112.1| signal recognition particle-docking protein FtsY [Campylobacter
           curvus 525.92]
 gi|112803142|gb|EAU00486.1| signal recognition particle-docking protein FtsY [Campylobacter
           curvus 525.92]
          Length = 288

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/297 (31%), Positives = 158/297 (53%), Gaps = 20/297 (6%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL--LTKR 74
           L KG   T          I+S++      +E LE++L+ +D+   + ++I+  L      
Sbjct: 5   LKKGLEKT-------FGAILSAKTSKKITKENLEEILLEADVTYEIVEEIIYYLPPQNDV 57

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             +D+      Y + E   K+              +P V L++GVNG GKTT I KL+  
Sbjct: 58  RREDLRRVMSSYFIYEKERKI-----------EPDKPFVDLILGVNGAGKTTTIAKLANL 106

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             +AG  V+L A DTFR+ AI+QL+ W+ R +   V ++ G D +A+A++    A AK +
Sbjct: 107 YKNAGKSVILGACDTFRAGAIEQLRQWSLRLNVPIVATQQGHDPSAVAFDTISSAVAKNI 166

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D +I+DTAGRL N + L   + K++R+ ++    APH  + +LD T G   + Q + F+ 
Sbjct: 167 DRVILDTAGRLQNQTNLANELSKIVRISQKAYERAPHRKILILDGTQGNAGVAQAKAFNE 226

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +    G+I+TK+DGTA+GG L  +    ++P+ ++GVGE + DL  F   +F   + 
Sbjct: 227 IVELDGVIITKLDGTAKGGALFGVARELELPILYIGVGEKMEDLVKFDPDEFLDSLM 283


>gi|317009762|gb|ADU80342.1| signal recognition particle protein [Helicobacter pylori India7]
          Length = 448

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSVKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIASNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGIAYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|238503263|ref|XP_002382865.1| signal recognition particle protein SRP54 [Aspergillus flavus
           NRRL3357]
 gi|220691675|gb|EED48023.1| signal recognition particle protein SRP54 [Aspergillus flavus
           NRRL3357]
          Length = 527

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 138/306 (45%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + + +    
Sbjct: 3   LQDLGRRINAAVNDLTRSNNLDEKAFDDMLKEICAALLSADVNVRLVQSLRKSIKSSVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ++ P + PF      R +VI+ VG+ G GKTT   KL
Sbjct: 63  ASLPPAVNKKRLIQKAVFDELVALVNPHADPFRPK-KGRSNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + 
Sbjct: 122 ARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ +++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   
Sbjct: 182 ERFEIIIVDTSGRHKQEEELFTEMTQIQTAVT------PDQTILVLDSTIGQAAEAQSAA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + 
Sbjct: 236 FKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|167751476|ref|ZP_02423603.1| hypothetical protein EUBSIR_02472 [Eubacterium siraeum DSM 15702]
 gi|167655284|gb|EDR99413.1| hypothetical protein EUBSIR_02472 [Eubacterium siraeum DSM 15702]
 gi|291530283|emb|CBK95868.1| signal recognition particle-docking protein FtsY [Eubacterium
           siraeum 70/3]
          Length = 301

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 125/303 (41%), Positives = 179/303 (59%), Gaps = 5/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    KL  G  +T   L   IT +I+S  ++D+   EELE+ LI SDIG   +  I E 
Sbjct: 1   MGLFEKLKNGLKNTKDALASKITGVINSFTKIDEDFFEELEETLILSDIGAVTSANICEA 60

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +  A   +    +   + ++I  +L   ++        +P VILV+GVNG GKTT I
Sbjct: 61  LRKEVKATGTTDPAEVKGLLKKIIAGILEGENELI---LDTKPTVILVIGVNGAGKTTTI 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  +  +G KV++AA DTFR+AAI+QL++W  R   D +    GSD AA+ ++A K 
Sbjct: 118 GKLAYNLKSSGKKVVVAAADTFRAAAIEQLEVWTQRAGVDIIKHSEGSDPAAVVFDAVKA 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
             A+  DV+I DTAGRLHN   LM  + K+ R++    P +    L VLDATTGQNA+ Q
Sbjct: 178 GIARDADVIICDTAGRLHNKKNLMDELKKIARIVNNNAPDSRVETLLVLDATTGQNAVNQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F   A  TG+++TK+DGTA+GG +IPI     IPV  +GVGE I+DL+PFV +D+  
Sbjct: 238 ARLFKETADITGIVLTKLDGTAKGGIIIPIKEELGIPVKLVGVGEKIDDLQPFVPRDYVE 297

Query: 309 VIT 311
            + 
Sbjct: 298 ALF 300


>gi|291320132|ref|YP_003515390.1| cell division protein FtsY [Mycoplasma agalactiae]
 gi|290752461|emb|CBH40433.1| Cell division protein FtsY [Mycoplasma agalactiae]
          Length = 354

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 111/313 (35%), Positives = 185/313 (59%), Gaps = 9/313 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + K   G + +S  L   + D+ +  +++D+   +ELE++LI SDI   +   I+  +  
Sbjct: 44  LEKYQAGLSKSS-SLGAKLLDLSNKYKKIDEEYFDELEEILIMSDISAKLVYAIITHIKN 102

Query: 73  KRYAKDVSVQRVLYDVSE----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +   ++++  + + ++      +++     +    N +   R ++++ +GVNG GKTT I
Sbjct: 103 EVKIRELTNTKDIGELIADQMFVVYTNKSVVDTTLNVE-DERLNILIFIGVNGSGKTTSI 161

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFK 187
            K++ K    G KV++AA DTFR+ A+DQ+ IW++R  AD V   + G+D A++ Y A +
Sbjct: 162 AKVAHKYIKEGKKVLIAAADTFRAGAVDQIAIWSERVGADIVKPIKEGADPASVVYSALE 221

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+A+  D+L+IDTAGRL N   LM  + KM  ++ +    APH  L VLDATTGQN + 
Sbjct: 222 KAKAENYDLLLIDTAGRLQNKINLMNELKKMYSIINKFQEDAPHECLLVLDATTGQNGVS 281

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F  VA  TG+I+TKMDGT++GG ++ I     I V +LG+GEG++DL+ F   +F 
Sbjct: 282 QAKAFSEVANPTGIILTKMDGTSKGGIVLSIKDEFNINVKYLGLGEGLDDLQEFDLDNFI 341

Query: 308 AVITG-CLDYGEE 319
             +T   +D  EE
Sbjct: 342 YEMTKDLIDKNEE 354


>gi|270292811|ref|ZP_06199022.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           M143]
 gi|270278790|gb|EFA24636.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           M143]
          Length = 436

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 175/314 (55%), Gaps = 7/314 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            ++      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 121 EEEYPQVEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 180

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVV 117
           VA  + EEL  +   ++      L  V  +I K++    K  N+D    F     V+L V
Sbjct: 181 VASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQDGLTVMLFV 238

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 239 GVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKAD 298

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     L
Sbjct: 299 PASVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLAL 358

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D
Sbjct: 359 DASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDD 418

Query: 298 LEPFVAKDFSAVIT 311
           +  F +++F   + 
Sbjct: 419 IGEFNSENFMKGLL 432


>gi|169776553|ref|XP_001822743.1| signal recognition particle protein [Aspergillus oryzae RIB40]
 gi|83771478|dbj|BAE61610.1| unnamed protein product [Aspergillus oryzae]
          Length = 527

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 138/306 (45%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + + +    
Sbjct: 3   LQDLGRRINAAVNDLTRSNNLDEKAFDDMLKEICAALLSADVNVRLVQSLRKSIKSSVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ++ P + PF      R +VI+ VG+ G GKTT   KL
Sbjct: 63  ASLPPAVNKKRLIQKAVFDELVALVNPHADPFRPK-KGRSNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + 
Sbjct: 122 ARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ +++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   
Sbjct: 182 ERFEIIIVDTSGRHKQEEELFTEMTQIQTAVT------PDQTILVLDSTIGQAAEAQSAA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + 
Sbjct: 236 FKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|193216691|ref|YP_001999933.1| signal recognition particle [Mycoplasma arthritidis 158L3-1]
 gi|193002014|gb|ACF07229.1| signal recognition particle [Mycoplasma arthritidis 158L3-1]
          Length = 441

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 141/308 (45%), Gaps = 23/308 (7%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +++ K     + K+     DI+        V  E++  L+ +D+ + V +   + +  K 
Sbjct: 7   KRMQKSMDKINKKMSINEEDIL-------EVLREVKLALLEADVNLDVVRTFTKAVKEKA 59

Query: 75  YAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               +       Q VL    + +  +L   + P        P  I++VG+ G GKTT   
Sbjct: 60  LNAKIIGKLNQQQTVLKIFKDELTTILG--TNPIEISLKKIPTTIMMVGLQGSGKTTTAA 117

Query: 130 KLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           KL+       L    +L   D +R AA +QL+  A +T  DF   E       +A EA K
Sbjct: 118 KLATFFKKKKLCQNPLLVGDDIYRPAAREQLEQLAKQTQTDFFTKEKNDAIF-IAKEAIK 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A   + D++I+DTAGRL  +  LM  +  + + +       P  +L V+DA +GQ+ + 
Sbjct: 177 RANDNRNDLVIVDTAGRLAIDENLMDELINIKKAIH------PDYILLVVDAMSGQDVIN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             ++FH     +  I+TK+D  ARGG  + I    ++P+ F+G GE ++ +E F     +
Sbjct: 231 VAKIFHENLNLSATIITKLDSDARGGAALSITHLLEVPIAFIGTGEKLSGIEIFHPDRMA 290

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 291 NRILGMGD 298


>gi|11498230|ref|NP_069456.1| signal recognition particle protein Srp54 [Archaeoglobus fulgidus
           DSM 4304]
 gi|3334342|sp|O29633|SRP54_ARCFU RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|2650007|gb|AAB90619.1| signal recognition particle, subunit SRP54 (srp54) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 433

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 148/299 (49%), Gaps = 22/299 (7%)

Query: 26  LKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-- 79
             LKE    I  S  +D    + + +E++  LI++D+ V   ++I + +  +  ++DV  
Sbjct: 4   ESLKEVARKIAGSSSIDKKFVEEMVKEIQRALIKADVNVRQVKEISDAIKKRALSEDVLP 63

Query: 80  ---SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
              + +++L  V E +   L  + +        +   I++VG+ G GKTT   K++K   
Sbjct: 64  ALNAKEQILKIVYEEL---LRGVGEGLEIPL--KKAKIMLVGLQGSGKTTTTAKMAKYFK 118

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           D G+KV + A DT+R AA +QL+  A+     F   +   DA  +   A ++ +    D+
Sbjct: 119 DRGMKVAVVAADTWRPAAYEQLRQLAEEYGITFYGEKGEKDAVKIVKNALEKLKD--HDM 176

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +IIDTAGR      L+  + K+  V        P   L VLDA  GQ A +Q + FH   
Sbjct: 177 IIIDTAGRHALEDELIDEMIKIAEV------ARPDYKLLVLDAAIGQLASKQAQAFHEAI 230

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  G+I+TK DGTA+GGG +       IP+ F+G GE + D E F    F + + G  D
Sbjct: 231 GINGIIITKFDGTAKGGGALSAARQIGIPIAFIGTGEKVEDFERFDPAGFVSRLLGMGD 289


>gi|296436375|gb|ADH18549.1| Cell Division Protein [Chlamydia trachomatis G/9768]
 gi|296438234|gb|ADH20395.1| Cell Division Protein [Chlamydia trachomatis G/11074]
 gi|297140735|gb|ADH97493.1| Cell Division Protein [Chlamydia trachomatis G/9301]
          Length = 284

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 103/286 (36%), Positives = 146/286 (51%), Gaps = 10/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
               +  +   + L   + E  E LL   D G  + +   EEL   +   +         
Sbjct: 5   FGNKLRSLF-KKTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRRCKNPDE-------RA 56

Query: 88  VSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           V ELI   L  +    P     S RP   LV+G NG GKTT + KL+        KV++ 
Sbjct: 57  VKELIRSFLSKIISKLPQREPLSVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLIV 116

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFRSA +DQ++ WA+  +  F+  + G DAAA+A++    A A+  D +IIDT+GRL
Sbjct: 117 ATDTFRSAGMDQMRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRL 176

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H ++ L+  + K+  V  +  P APH  L  +DAT G N L QV++FH      GLI TK
Sbjct: 177 HTHTNLLKELQKIANVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTK 236

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           ++G+A+GG L  I    KIP  F+G GE I+D EPF    F   + 
Sbjct: 237 VEGSAKGGSLFRIADELKIPTRFVGYGETIHDFEPFAIDRFLDKLL 282


>gi|296242673|ref|YP_003650160.1| signal recognition particle-docking protein FtsY [Thermosphaera
           aggregans DSM 11486]
 gi|296095257|gb|ADG91208.1| signal recognition particle-docking protein FtsY [Thermosphaera
           aggregans DSM 11486]
          Length = 297

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 99/305 (32%), Positives = 167/305 (54%), Gaps = 19/305 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             +++ + F        E  + II SR   + + +EL+  L+ SD+   VA++I   LL 
Sbjct: 1   MFKRIKEAFKK----FIESASSIIFSREKLESLIDELKLELVASDVAYEVAEEISSRLL- 55

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKTT 126
              A D  + R   D+  ++  +L+ + +        +   +++P  ++ +GVNGVGKTT
Sbjct: 56  --KAVDEGLVRSREDLQRVLKNILIEVFEKAGSVDLLSVARANKPCKLVFLGVNGVGKTT 113

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            I K++  + D G K ++ A DTFR+ A +QLKI ++RT       + GSD A++A++A 
Sbjct: 114 TIAKIAVLLRDNGFKPLMVAADTFRAGAQEQLKIHSERTGIPVFTGKYGSDPASVAFDAI 173

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A ++  D L+IDTAGR+H +  L+  + K++RV+K      PH  + V+DA TG +A+
Sbjct: 174 QFASSRGFDALLIDTAGRMHVDIDLVNELKKVVRVVK------PHFKILVVDALTGNDAI 227

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q   F+   G  G+I+TK+D   +GG  + I      PV + GVG+G  DL+PF   ++
Sbjct: 228 EQARFFNEAVGVDGVIVTKVDAYEQGGVPLSIAYILGKPVIYAGVGQGYKDLKPFNVYEY 287

Query: 307 SAVIT 311
              I 
Sbjct: 288 VNRIL 292


>gi|29840416|ref|NP_829522.1| signal recognition particle [Chlamydophila caviae GPIC]
 gi|29834765|gb|AAP05400.1| signal recognition particle [Chlamydophila caviae GPIC]
          Length = 447

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 150/305 (49%), Gaps = 21/305 (6%)

Query: 22  ASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYAK 77
           +S S KL    + ++SSRR+ ++ + E + +    L+ +D+   V +  + ++  K   +
Sbjct: 3   SSLSQKLSSIFSSLVSSRRITEENISEAIREVRLALLDADVNYHVVKSFIAKVKEKILGE 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q+ +  + E + ++L   +       S  P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVWKHVSPGQQFIRYLHEELTELLSGKADLIT---SGNPGVILLCGLQGTGKTTTCAKLA 119

Query: 133 KKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
               + G   KV++   D  R AA+DQL+    +T A+   +  G D   +A +A   A+
Sbjct: 120 AYALEEGKAKKVLVVPCDLKRFAAVDQLRNLISKTRAELY-NPEGQDPVKVASQALDYAK 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D+++IDTAGRLH + +LM  +  + ++ K          L V++   GQ+A+   +
Sbjct: 179 QHGHDLVLIDTAGRLHVDEVLMEELASIQKISKSC------ERLFVMNLAMGQDAVTTAK 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I++  DG AR G ++ +      P+ F G GE I DL PF A+  +  I
Sbjct: 233 AFDDYLDLTGVIISMTDGDARAGAVLSMKSLLGKPIKFEGCGEKIQDLRPFNAESMADRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|322825983|gb|EFZ30786.1| signal recognition particle, putative [Trypanosoma cruzi]
          Length = 565

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 143/305 (46%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
            A    K+   I+ + S   L +D V+E L +    L+++D+ V   +++ + +  +   
Sbjct: 81  LAELGQKIGGAISKMSSKPLLGEDDVKEFLNEVARALLQADVHVTTVKELQQTIRAEVAI 140

Query: 77  KDVSVQRVLYDVSEL-----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              +V      + +      + K+L P  KPF      + ++++ VG+ G GKTT   K 
Sbjct: 141 TSEAVGLNKRKMLQSAVFSGLKKILDPGVKPF-IPAKGKNNIVMFVGLQGSGKTTSCTKY 199

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      GLK  L   DTFR+ A DQL+  A +    F  S   +D   +A E   + + 
Sbjct: 200 AAYFQRKGLKTALVCADTFRAGAYDQLRQNATKAKIRFYGSLTEADPVIIAKEGVAELEK 259

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++IIDT+GR    S L   + ++   +K      P+ ++ V+ AT GQ    Q   
Sbjct: 260 EKYDLIIIDTSGRHKQESALFEEMKQVQEAVK------PNDIVFVMSATDGQGIREQARQ 313

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE   D E F  + F + + 
Sbjct: 314 FKEKVPVGSVIVTKLDGHAKGGGALAAVAMTKSPIVFIGTGEHFEDFELFQPESFVSRML 373

Query: 312 GCLDY 316
           G  D 
Sbjct: 374 GMGDM 378


>gi|225860923|ref|YP_002742432.1| cell division protein FtsY [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229962|ref|ZP_06963643.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254347|ref|ZP_06977933.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502759|ref|YP_003724699.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae TCH8431/19A]
 gi|225726484|gb|ACO22335.1| cell division protein FtsY [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238354|gb|ADI69485.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 429

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 167/300 (55%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 126 EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 185

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+       S   +  F     V+L VGVNGVGKTT IGKL
Sbjct: 186 AKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKL 245

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 246 AHRYKRTGKKVMLVAADTFRTGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVA 305

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+TGQNAL Q + 
Sbjct: 306 EGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKE 365

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   + 
Sbjct: 366 FSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKGLL 425


>gi|221231938|ref|YP_002511090.1| signal recognition particle 54 FtsY [Streptococcus pneumoniae ATCC
           700669]
 gi|220674398|emb|CAR68948.1| putative signal recognition particle 54 FtsY [Streptococcus
           pneumoniae ATCC 700669]
          Length = 429

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 167/300 (55%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 126 EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 185

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+       S   +  F     V+L VGVNGVGKTT IGKL
Sbjct: 186 AKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKL 245

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 246 AHRYKRTGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVIFDGMERAVA 305

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+TGQNAL Q + 
Sbjct: 306 EGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKE 365

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   + 
Sbjct: 366 FSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKGLL 425


>gi|253751926|ref|YP_003025067.1| cell division protein FtsY [Streptococcus suis SC84]
 gi|253753749|ref|YP_003026890.1| cell division protein FtsY [Streptococcus suis P1/7]
 gi|253755373|ref|YP_003028513.1| cell division protein FtsY [Streptococcus suis BM407]
 gi|251816215|emb|CAZ51842.1| putative cell division protein FtsY [Streptococcus suis SC84]
 gi|251817837|emb|CAZ55590.1| putative cell division protein FtsY [Streptococcus suis BM407]
 gi|251819995|emb|CAR46155.1| putative cell division protein FtsY [Streptococcus suis P1/7]
 gi|319758288|gb|ADV70230.1| Signal recognition particle GTPase [Streptococcus suis JS14]
          Length = 424

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 119/305 (39%), Positives = 169/305 (55%), Gaps = 3/305 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
             S   K  +    T       + +  ++ R +D+   EELE++LI SD+GV VA  + E
Sbjct: 116 QESEQDKYQRTLKKTRTGFGARLNEFFANFRSVDEEFFEELEEMLILSDVGVQVASTLTE 175

Query: 69  ELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           EL  +   ++      L    + +L+             +F     V+L VGVNGVGKTT
Sbjct: 176 ELRYEAKLQNAKKIDELRRVIIEKLVDIYEKDGQFSEQINFQDDLTVMLFVGVNGVGKTT 235

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ K   AG KVML A DTFR+ A+ QL  W  R     V     SD A++ ++  
Sbjct: 236 SIGKLAYKYKQAGKKVMLVAADTFRAGAVAQLVEWGRRVDVPVVTGPEKSDPASVVFDGV 295

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K+A A+ VD+L+IDTAGRL N   LMA + K+ R++KR  P APH  L  LDA+TGQNAL
Sbjct: 296 KRAVAEGVDILMIDTAGRLQNKENLMAELEKIGRIIKRTLPDAPHETLLALDASTGQNAL 355

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F  +   TGL++TK+DGTA+GG ++ I     IPV  +G GE I+D+  F +++F
Sbjct: 356 SQAKEFAKITPLTGLVLTKLDGTAKGGVVLAIRQELDIPVKLIGFGEKIDDIGEFKSEEF 415

Query: 307 SAVIT 311
              + 
Sbjct: 416 MRGLL 420


>gi|294786173|ref|ZP_06751427.1| signal recognition particle-docking protein FtsY [Parascardovia
           denticolens F0305]
 gi|315227380|ref|ZP_07869167.1| cell division protein FtsY [Parascardovia denticolens DSM 10105]
 gi|294485006|gb|EFG32640.1| signal recognition particle-docking protein FtsY [Parascardovia
           denticolens F0305]
 gi|315119830|gb|EFT82963.1| cell division protein FtsY [Parascardovia denticolens DSM 10105]
          Length = 396

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 115/317 (36%), Positives = 179/317 (56%), Gaps = 8/317 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +      S + +L    A +S    + +  I+S   L++   E++ED L+  D+G   ++
Sbjct: 82  ETPEAPQSRLVRLRAKLARSSNPFGKALFSILSQDNLNESDWEDVEDTLLLVDVGAEASE 141

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFS---HRPHVILVVGV 119
           ++V +L T    +     + ++D+  ++L+  +   + +    +      +   I++VGV
Sbjct: 142 RLVSQLRTDARVQGSKDPQAVHDMLRAKLLDLVDPGMDRSLAAERPESVGKTSAIIMVGV 201

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDA 178
           NG GKTT  GKL++     G  V+L A DTFR+AA DQL+ W  R     V S+  G+D 
Sbjct: 202 NGSGKTTTSGKLARLFVAEGKSVVLGAADTFRAAAADQLETWGSRVGVPVVRSDKEGADP 261

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++A+EA ++AQ  K DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLD
Sbjct: 262 ASVAFEAAQKAQEAKADVLIIDTAGRLQNKANLMDELGKIRRVTEKTLP--VDEVLLVLD 319

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN + Q  +F    G TG+++TK+DG+ARGG +I +     +PV  +G+GEG +DL
Sbjct: 320 ATTGQNGMEQARVFAEAIGITGVVLTKLDGSARGGIVISVQQALGVPVKLVGLGEGPDDL 379

Query: 299 EPFVAKDFSAVITGCLD 315
            PF  + F   I G  D
Sbjct: 380 APFDPESFVDGIIGDED 396


>gi|291557098|emb|CBL34215.1| signal recognition particle-docking protein FtsY [Eubacterium
           siraeum V10Sc8a]
          Length = 301

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 125/303 (41%), Positives = 179/303 (59%), Gaps = 5/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +    KL  G  +T   L   IT +I+S  ++D+   EELE+ LI SDIG   +  I E 
Sbjct: 1   MGLFEKLKNGLKNTKEALASKITGVINSFTKIDEDFFEELEETLILSDIGAVTSANICEA 60

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  +  A   +    +   + ++I  +L   ++        +P VILV+GVNG GKTT I
Sbjct: 61  LRKEVKATGTTDPAEVKGLLKKIIAGILEGENELI---LDTKPTVILVIGVNGAGKTTTI 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+  +  +G KV++AA DTFR+AAI+QL++W  R   D +    GSD AA+ ++A K 
Sbjct: 118 GKLAYNLKSSGKKVVVAAADTFRAAAIEQLEVWTQRAGVDIIKHSEGSDPAAVVFDAVKA 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
             A+  DV+I DTAGRLHN   LM  + K+ R++    P +    L VLDATTGQNA+ Q
Sbjct: 178 GIARDADVIICDTAGRLHNKKNLMDELKKIARIVNNNAPDSRVETLLVLDATTGQNAVNQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F   A  TG+++TK+DGTA+GG +IPI     IPV  +GVGE I+DL+PFV +D+  
Sbjct: 238 ARLFKETADITGIVLTKLDGTAKGGIIIPIKEELGIPVKLVGVGEKIDDLQPFVPRDYVE 297

Query: 309 VIT 311
            + 
Sbjct: 298 ALF 300


>gi|225548907|ref|ZP_03769884.1| signal recognition particle protein [Borrelia burgdorferi 94a]
 gi|225370510|gb|EEG99946.1| signal recognition particle protein [Borrelia burgdorferi 94a]
          Length = 444

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S     +  I  +     ++D       E +++ L+ +D+ + V ++ +  ++ +   
Sbjct: 2   LESLGSNFRNFINYLSGKSTINDKNIAEAIEIIKNSLVDADVNLRVIRRFLNSIIEESKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V        + +  V++ + K L   +   +   +++   I+++G+ G GKTT   KL
Sbjct: 62  VKVLRGIDPKSQFIKIVNDNLVKFLGGKNYELSLHPTNKQSYIIMLGLQGSGKTTTCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S K+     KV+L A DTFR+AA++QLKI   +        E   D   +   + K A++
Sbjct: 122 SLKLKKENRKVLLVAADTFRAAAVEQLKILGGQVGVPVFSIEGEKDPIKIVKASMKFAES 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DT GRL   S+L+  I K+  +L+          + V+D+  GQ A+   + 
Sbjct: 182 NFFDSVIVDTRGRLEIESLLVEEIKKIKGILQPA------ETILVVDSMMGQVAVNIAKE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I +K D   RGG ++       +P+ F+GVGE I DL+ F  +  ++ I 
Sbjct: 236 FNENVGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKFIGVGEKIEDLDSFYPERIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|168486564|ref|ZP_02711072.1| cell division protein FtsY [Streptococcus pneumoniae CDC1087-00]
 gi|183570449|gb|EDT90977.1| cell division protein FtsY [Streptococcus pneumoniae CDC1087-00]
          Length = 429

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 168/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 126 EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 185

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+       S   +  F     V+L VGVNGVGKTT IGKL
Sbjct: 186 AKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKL 245

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +   AG KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 246 AHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVA 305

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+TGQNAL Q + 
Sbjct: 306 EGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKE 365

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   + 
Sbjct: 366 FSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKGLL 425


>gi|145591970|ref|YP_001153972.1| GTP-binding signal recognition particle [Pyrobaculum arsenaticum
           DSM 13514]
 gi|158514165|sp|A4WLQ3|SRP54_PYRAR RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|145283738|gb|ABP51320.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 433

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 152/308 (49%), Gaps = 21/308 (6%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKI----VEEL 70
           K       KL E I D+     +D+   +E+    +  L+++D+ + + +      V+ +
Sbjct: 2   KALTELFSKLVEKIRDV---EYIDEATLQEIAREIQRTLLKADVPLDLVKTFTDNAVKRI 58

Query: 71  LTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             ++    +  +  L Y + E + K++    +P  +  + +P+++L++GV G GKTT   
Sbjct: 59  REEKPPAGIPPREYLIYVLYEELVKLMGG-EQPAEFKPTKKPYIVLLLGVEGSGKTTTSA 117

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++ +   G KV +   DT R AA DQL+  A++  A F     G DA  +A      A
Sbjct: 118 KLARYLMKRGYKVGMVETDTIRPAAFDQLRQLAEKIGAPFYGERDGKDAVEIARRGV--A 175

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             K VDVLIIDTAGR  N   L+  +  +       D   P  V+ V+DAT G+ A  Q 
Sbjct: 176 NLKGVDVLIIDTAGRHRNEEALLQEVKAIY------DAVNPDEVVLVVDATVGKLAAAQA 229

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           E F        +I+TKMD TARGGG +  V      V F+GVGE + +LEPF  + F A 
Sbjct: 230 EAFMKYLPIHTVIITKMDSTARGGGALAAVAKTGARVKFIGVGEDVEELEPFNPRKFVAR 289

Query: 310 ITGCLDYG 317
           + G  D  
Sbjct: 290 LLGMGDLD 297


>gi|255100267|ref|ZP_05329244.1| putative signal recognition particle [Clostridium difficile
           QCD-63q42]
          Length = 426

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 193/311 (62%), Gaps = 4/311 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +    + ++   +L +G       + + I +++ S  ++D+ + E+LE++LI +D+GV  
Sbjct: 117 EDKEDKKVNLFERLKQGLTKAKQGITDRIDEVLKSYTKIDEELLEDLEEILITADVGVNT 176

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I+E L  K   K ++    + + +  ++  +L   +     D    P +IL+VGVNG
Sbjct: 177 TMDIIERLRDKIKQKGITEPIKVREELKSIVEDILTNENS--TLDIEPAPCIILMVGVNG 234

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ +    G KV+LAA DTFR+AA +QL+IWA+RT+ D +  + G+D  A+
Sbjct: 235 VGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAV 294

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A K A+A+K DVLI DTAGRLHN + LM  +GK+ +++ R  P A   VL V+DATT
Sbjct: 295 VFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVLLVVDATT 354

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F  VA  TG+++TK+DGTA+GG ++ +     +PV  +GVGE + DL+ F
Sbjct: 355 GQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESVEDLQDF 414

Query: 302 VAKDFSAVITG 312
            AK FS  + G
Sbjct: 415 NAKSFSDALFG 425


>gi|254169193|ref|ZP_04876028.1| SRP54-type protein, GTPase domain [Aciduliprofundum boonei T469]
 gi|197621851|gb|EDY34431.1| SRP54-type protein, GTPase domain [Aciduliprofundum boonei T469]
          Length = 348

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 149/301 (49%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S    L+  I  I  +  +D+ + +E    ++  L+R+D+ V +A K+ + +  +   
Sbjct: 2   LDSLGESLRNTIRKISKAGYVDESLIKEVVRDIQRALLRADVEVHLALKLSKNVERRALE 61

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +         D + ++I++ L+ +      + + +P  +++VG+ G GKTT  GKL++  
Sbjct: 62  EKPPSGMSHRDFLIKIIYEELVAILGK-EKEVALKPQKLMLVGLYGQGKTTTAGKLARYF 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              GL V L A D  R AA +QLK   ++ +          DA  +A +A K+ +     
Sbjct: 121 HKKGLSVALIACDVHRPAAYEQLKQIGEQLNVPVFGIPGEKDARKIARDAVKKMKD--YQ 178

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I DT+GR      L+  I  +  +++      P  +  VLDAT GQ A +Q + FH  
Sbjct: 179 VQIFDTSGRHALEDDLIEEIKDLKEIIQ------PDEIFLVLDATIGQQAGKQAKAFHDA 232

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G TG+I+TKMDG+A+GGG +  V     PV F+G GE + DLE F    F + + G  D
Sbjct: 233 VGVTGVIITKMDGSAKGGGALSAVAATGAPVVFIGTGEHLEDLEHFNPTRFISRLLGMGD 292

Query: 316 Y 316
            
Sbjct: 293 L 293


>gi|326920725|ref|XP_003206619.1| PREDICTED: signal recognition particle 54 kDa protein-like
           [Meleagris gallopavo]
          Length = 474

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 136/299 (45%), Gaps = 36/299 (12%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E L+     
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENLVD---- 58

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
                                P  K +      + ++I+ VG+ G GKTT   KL+    
Sbjct: 59  ---------------------PGVKAWT-PTKGKQNIIMFVGLQGSGKTTTCSKLAYFYQ 96

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             G K  L   DT+R+ A DQLK  A +    F  S    D   +A E  ++ + +  ++
Sbjct: 97  RKGWKTCLICADTYRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEI 156

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + F    
Sbjct: 157 IIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKV 210

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + G  D
Sbjct: 211 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 269


>gi|332203092|gb|EGJ17160.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae GA47901]
          Length = 406

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 114/300 (38%), Positives = 167/300 (55%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 103 EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 162

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+       S   +  F     V+L VGVNGVGKTT IGKL
Sbjct: 163 AKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKL 222

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +   AG KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 223 AHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVA 282

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+L+IDTAGRL N   LM  + K+ R++KR+ P APH     LDA+TGQNAL Q + 
Sbjct: 283 EGIDILMIDTAGRLQNKDNLMTELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKE 342

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   + 
Sbjct: 343 FSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKGLL 402


>gi|253682407|ref|ZP_04863204.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum D str. 1873]
 gi|253562119|gb|EES91571.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum D str. 1873]
          Length = 304

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 121/301 (40%), Positives = 188/301 (62%), Gaps = 1/301 (0%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   KL  G A T     E +++++  + ++D+ + EELE++LI +DIGV  + ++++ +
Sbjct: 4   NLFNKLKDGLAKTKNNFTEKVSEVLKLAVKIDEELFEELEEILITADIGVDTSLEVIDRV 63

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K   K ++  + +YD  + +   ++        +    P  ILV+GVNG GKTT IGK
Sbjct: 64  KDKVKEKRITDPKEVYDCLKEVLIEILTEENENKKEEESIPKTILVIGVNGAGKTTSIGK 123

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +S K+ + G KV++AA DTFR+AAIDQL++W++R   D +  + GSD A++ ++A + ++
Sbjct: 124 MSNKLKNQGHKVIMAAADTFRAAAIDQLEVWSNRAGVDIIRHQEGSDPASVVFDAIQASK 183

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+K DVLI DTAGRLHN   LM  + K+ R++ R    A    L VLD TTGQNAL+Q +
Sbjct: 184 ARKADVLICDTAGRLHNKKNLMNELEKINRIIDREYSEANKQTLLVLDGTTGQNALQQAK 243

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F  V    G+++TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F A+ F   +
Sbjct: 244 QFAEVCPIDGIVITKLDGTAKGGVIIAIKHQLHIPVKFIGVGEGIDDLQEFNAESFVEAL 303

Query: 311 T 311
            
Sbjct: 304 F 304


>gi|255994065|ref|ZP_05427200.1| signal recognition particle-docking protein FtsY [Eubacterium
           saphenum ATCC 49989]
 gi|255993733|gb|EEU03822.1| signal recognition particle-docking protein FtsY [Eubacterium
           saphenum ATCC 49989]
          Length = 293

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 124/295 (42%), Positives = 176/295 (59%), Gaps = 7/295 (2%)

Query: 18  TKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            +GF S    L E + DIISS+  +DD + EEL D LI +DIGV  A++I+E L +    
Sbjct: 5   KRGFFS---GLSERLGDIISSKPAVDDDMLEELTDELIMADIGVDTAERIIELLKSSIKD 61

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           + ++    +    +L   +   +      D S +  VILV+GVNG GKTT I K++    
Sbjct: 62  EGLTTPEEVK--YKLSKTIEKIVDVEGTMDLSGK-SVILVIGVNGSGKTTGIAKMANVFK 118

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV+LAAGDTFR+AA  QL  WAD      V  + G+D +A+ ++A   ++A+ VD 
Sbjct: 119 QHDKKVLLAAGDTFRAAAAKQLSHWADAVGVSVVKHDEGADPSAVVFDAISASKARNVDT 178

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           LI+DTAGRL N   LM  + KM RV++R  P A    + VLDA TG+NAL QVE F  V+
Sbjct: 179 LIVDTAGRLQNKKNLMDELSKMKRVVQREYPEAKLYTMLVLDANTGKNALSQVEKFSEVS 238

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              G+++TKMDGTA+GG ++ I   +KIPV ++G+GE   D+  F A++FS  I 
Sbjct: 239 AIDGIMLTKMDGTAKGGIVVTIADVYKIPVIYMGIGEKKEDICEFDAREFSREIL 293


>gi|109947829|ref|YP_665057.1| signal recognition particle protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109715050|emb|CAK00058.1| signal recognition particle protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 448

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+    A+++++++ T+  A  +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKAARELLKKVETQTKASGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GRQQFLDALEKSLLEILSAQGGSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVLI+
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVQEIANNALKRAKEAQFDVLIV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMKELKEVKEILT------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|307709476|ref|ZP_07645933.1| signal recognition particle-docking protein FtsY [Streptococcus
           mitis SK564]
 gi|307619790|gb|EFN98909.1| signal recognition particle-docking protein FtsY [Streptococcus
           mitis SK564]
          Length = 427

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 120/302 (39%), Positives = 172/302 (56%), Gaps = 7/302 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 124 EKYDRSLKKTRTGFGARLNTFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 183

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVVGVNGVGKTTVIG 129
              ++      L  V  +I K++    K  N+D    F     V+L VGVNGVGKTT IG
Sbjct: 184 AKLENAKKPDALRRV--IIEKLVELYEKDGNYDERIHFQEGLTVMLFVGVNGVGKTTSIG 241

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A
Sbjct: 242 KLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERA 301

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+TGQNAL Q 
Sbjct: 302 VAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQA 361

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE IND+  F +++F   
Sbjct: 362 KEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKINDIGEFNSENFMKG 421

Query: 310 IT 311
           + 
Sbjct: 422 LL 423


>gi|167385123|ref|XP_001737215.1| signal recognition particle 54 kDa protein [Entamoeba dispar
           SAW760]
 gi|165900054|gb|EDR26502.1| signal recognition particle 54 kDa protein [Entamoeba dispar
           SAW760]
          Length = 487

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            +     L   +  + SS  +D+ V     +E+E  L+  D+     +++V  +  K  +
Sbjct: 3   LSQLGSSLVTALRKMTSSTVVDEEVINTLLKEIETSLLGEDVNPIFIRQMVNNIKKKINS 62

Query: 77  KDVSVQRVLYD-----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +D+             V E +  ++ P ++PF      +  V+++VG+ G GKTT I KL
Sbjct: 63  EDIPDGIDKRKLIKDSVFEELINLVDPKTEPFKPK-KGKTCVLMMVGLQGAGKTTTITKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +    + G K  +   DTFR+ A +QL++ A R    F   +  SD   +A E  +  + 
Sbjct: 122 ALYYKNRGYKPAVVGADTFRAGAYEQLQMNAKRAGVPFFGIKEESDPVKVASEGVRTFRK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++++DT+GR   +  L   +  +   +K      P S++ V+D   GQ A  Q + 
Sbjct: 182 EKNDIILVDTSGRHKQDKELFKEMQSVRDAIK------PDSIIFVMDGAIGQAAFGQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG + GGG +  V   K P+ F+G GE +N++E F A+ F   + 
Sbjct: 236 FKDAVEVGSVIITKLDGHSNGGGALSAVAATKSPIIFIGTGEKVNEIEEFDAESFVRKLL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDL 300


>gi|332201707|gb|EGJ15777.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae GA47368]
          Length = 429

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 170/312 (54%), Gaps = 3/312 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             +      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 114 EPEAPQTEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 173

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           VA  + EEL  +   ++      L    + +L+       S   +  F     V+L VGV
Sbjct: 174 VASNLTEELRYEAKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGV 233

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D A
Sbjct: 234 NGVGKTTSIGKLAHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGSEKADPA 293

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA
Sbjct: 294 SVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDA 353

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+ 
Sbjct: 354 STGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIG 413

Query: 300 PFVAKDFSAVIT 311
            F +++F   + 
Sbjct: 414 EFNSENFMKGLL 425


>gi|3334344|sp|O42816|SRP54_CANAL RecName: Full=Signal recognition particle 54 kDa protein homolog
 gi|2739331|emb|CAA10999.1| Srp54 protein [Candida albicans]
          Length = 556

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 145/322 (45%), Gaps = 35/322 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV---REELEDLLIRSDIGVAVAQKIVEELLTK---- 73
            A    +L+  ++ + S    DD +    +++   L+ SD+ V +  K+   +  K    
Sbjct: 3   LADLGSRLRGALSSVESGS--DDEIQQMIKDICSALLESDVNVKLVAKLRGNIKNKIDES 60

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLS-------KPFNWDFSHRP-------------HV 113
             +K+ S       + ++I   L  L        KP     S +              HV
Sbjct: 61  NVSKETSAMNKRKKLQKIIFDELCALVDSNVEPPKPKKLSTSTKTINGKKVRLSKESSHV 120

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+ VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A + +  +  S 
Sbjct: 121 IMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSY 180

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +  D   +A+E  ++ + +K D++I+DT+GR      L   + ++   ++      P   
Sbjct: 181 LEPDPVKIAFEGVQKFKQEKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ------PTQT 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + V+D + GQ A  Q   F   +    +I+TKMDG A+GGG I  V   K P+ F+G GE
Sbjct: 235 IMVMDGSIGQAAESQARAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGE 294

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
            + DLE F    F + + G  D
Sbjct: 295 HVGDLEIFKPTTFISKLLGIGD 316


>gi|256384407|gb|ACU78977.1| signal recognition particle protein [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|256385239|gb|ACU79808.1| signal recognition particle protein [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|296455407|gb|ADH21642.1| signal recognition particle protein [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 447

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/302 (27%), Positives = 149/302 (49%), Gaps = 19/302 (6%)

Query: 24  TSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            S ++++ I   + +  L++       +E+   L+ +D+ +  A++I+  +  K     +
Sbjct: 7   LSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYI 66

Query: 80  SV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           S      Q+++  V E +  +L   + P   D + +P V+++VG+ G GKTT   KL+  
Sbjct: 67  SEGASAHQQMIKIVHEELVNILGKENAPL--DINKKPSVVMMVGLQGSGKTTTANKLAYL 124

Query: 135 MSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           ++    K +L  G D +R  AI+QL     +T+          D    A +A + A+   
Sbjct: 125 LNKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKG-KQDPVKTAEQALQYAKENN 183

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DV+I+DTAGRL  +  LM  +  + +        +P+ +L V+D  +GQ  +     F+
Sbjct: 184 FDVVILDTAGRLQVDQFLMKELDNLKK------KTSPNEILLVVDGMSGQEIINVTNEFN 237

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +    +G+++TK+DG ARGG  + I    K+P+ F+G GEG N L  F  K  +  + G 
Sbjct: 238 SKLKLSGVVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGM 297

Query: 314 LD 315
            D
Sbjct: 298 GD 299


>gi|15901105|ref|NP_345709.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae TIGR4]
 gi|111658433|ref|ZP_01409112.1| hypothetical protein SpneT_02000404 [Streptococcus pneumoniae
           TIGR4]
 gi|149012294|ref|ZP_01833363.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP19-BS75]
 gi|182684029|ref|YP_001835776.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae CGSP14]
 gi|303254261|ref|ZP_07340370.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS455]
 gi|303258879|ref|ZP_07344858.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP-BS293]
 gi|303261562|ref|ZP_07347509.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264233|ref|ZP_07350153.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS397]
 gi|303266136|ref|ZP_07352029.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS457]
 gi|303268137|ref|ZP_07353937.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS458]
 gi|14972726|gb|AAK75349.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae TIGR4]
 gi|147763620|gb|EDK70555.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP19-BS75]
 gi|182629363|gb|ACB90311.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae CGSP14]
 gi|301801901|emb|CBW34625.1| putative signal recognition particle 54 FtsY [Streptococcus
           pneumoniae INV200]
 gi|302598755|gb|EFL65792.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS455]
 gi|302637142|gb|EFL67630.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639822|gb|EFL70278.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP-BS293]
 gi|302642354|gb|EFL72701.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS458]
 gi|302644306|gb|EFL74560.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS457]
 gi|302646045|gb|EFL76272.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae BS397]
          Length = 429

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 118/314 (37%), Positives = 174/314 (55%), Gaps = 7/314 (2%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             +      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 114 EPEAPQTEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 173

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVV 117
           VA  + EEL  +   ++     VL  V  +I K++    K  ++D    F     V+L V
Sbjct: 174 VASNLTEELRYEAKLENAKKPDVLRRV--IIEKLVELYEKDGSYDESIHFQDNLTVMLFV 231

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT IGKL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D
Sbjct: 232 GVNGVGKTTSIGKLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKAD 291

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++  ++A  + +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     L
Sbjct: 292 PASVVFDGMERAVTEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLAL 351

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA+TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D
Sbjct: 352 DASTGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDD 411

Query: 298 LEPFVAKDFSAVIT 311
           +  F +++F   + 
Sbjct: 412 IGEFNSENFMKGLL 425


>gi|258571053|ref|XP_002544330.1| signal recognition particle 54 kDa protein [Uncinocarpus reesii
           1704]
 gi|237904600|gb|EEP79001.1| signal recognition particle 54 kDa protein [Uncinocarpus reesii
           1704]
          Length = 539

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 142/305 (46%), Gaps = 14/305 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   ++D+  S  LD    D + +E+   L+ +D+ V + Q++ + + +    
Sbjct: 3   LQDLGRRINAAVSDLTRSSNLDEKAFDSMLKEICAALLSADVNVRLVQELRKSIKSSVNF 62

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLS 132
             +        +  + +   L+ L  P    F  +    +VI+ VG+ G GKTT   KL+
Sbjct: 63  SSIPPAVNKKRLIQKAVFDQLVTLVDPKTEPFKPKKGRSNVIMFVGLQGAGKTTTCTKLA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + +
Sbjct: 123 RHYQTRGFKSALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAAEGVAKFKKE 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K +++I+DT+GR    + L   + ++   +K      P   + VLD+T GQ A  Q   F
Sbjct: 183 KFELIIVDTSGRHKQEADLFTEMIQIQNAVK------PDQTIMVLDSTIGQAAEAQSAAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            + A    +I+TK DG A GGG I  V   K P+ FLG GE + DLE F  K F   + G
Sbjct: 237 KSTADFGAIIITKTDGHAAGGGAISAVAATKTPIIFLGTGEHMLDLERFAPKPFIQKLLG 296

Query: 313 CLDYG 317
             D  
Sbjct: 297 MGDMA 301


>gi|255306207|ref|ZP_05350379.1| putative signal recognition particle [Clostridium difficile ATCC
           43255]
          Length = 426

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 193/311 (62%), Gaps = 4/311 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +    + ++   +L +G       + + I +++ S  ++D+ + E+LE++LI +D+GV  
Sbjct: 117 EDKEDKKVNLFERLKQGLTKAKQGITDRIDEVLKSYTKIDEELLEDLEEILITADVGVNT 176

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I+E L  K   K ++    + + +  ++  +L   +     D    P +IL+VGVNG
Sbjct: 177 TMDIIERLRDKIKQKGITEPIKVREELKSIVEDILTNENS--TLDIEPAPCIILMVGVNG 234

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ +    G KV+LAA DTFR+AA +QL+IWA+RT+ D +  + G+D  A+
Sbjct: 235 VGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAV 294

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A K A+A+K DVLI DTAGRLHN + LM  +GK+ +++ R  P A   VL V+DATT
Sbjct: 295 VFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVLLVVDATT 354

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F  VA  TG+++TK+DGTA+GG ++ +     +PV  +GVGE + DL+ F
Sbjct: 355 GQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESVEDLQDF 414

Query: 302 VAKDFSAVITG 312
            AK FS  + G
Sbjct: 415 NAKSFSDALFG 425


>gi|115433004|ref|XP_001216639.1| signal recognition particle 54 kDa protein [Aspergillus terreus
           NIH2624]
 gi|114189491|gb|EAU31191.1| signal recognition particle 54 kDa protein [Aspergillus terreus
           NIH2624]
          Length = 526

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 143/309 (46%), Gaps = 22/309 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTK--- 73
                 ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + + +    
Sbjct: 3   LQDLGRRINAAVNDLTRSNNLDEKAFDDMLKEICAALLSADVNVRLVQSLRKSIKSSVNF 62

Query: 74  -----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                   K   +Q+ ++D    +  ++ P ++PF      R +VI+ VG+ G GKTT  
Sbjct: 63  ASLPSAVNKKRLIQKAVFD---ELVALVNPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTC 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   +
Sbjct: 119 TKLARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAK 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + ++ +++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q
Sbjct: 179 FKKERFEIIIVDTSGRHKQEEELFTEMTQIQTAVT------PDQTILVLDSTIGQAAEAQ 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F  
Sbjct: 233 SAAFKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPKAFIQ 292

Query: 309 VITGCLDYG 317
            + G  D  
Sbjct: 293 KLLGMGDMA 301


>gi|237805173|ref|YP_002889327.1| Cell Division Protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273473|emb|CAX10389.1| Cell Division Protein [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 284

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/286 (36%), Positives = 146/286 (51%), Gaps = 10/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
               +  +   R L   + E  E LL   D G  + +   EEL   +   +         
Sbjct: 5   FGNKLRSLF-KRTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRQCKNPDE-------RA 56

Query: 88  VSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           V ELI   L  +    P     S RP   LV+G NG GKTT + KL+        KV++ 
Sbjct: 57  VKELIRSFLSKIISKLPQREPLSVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLIV 116

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFRSA +DQ++ WA+  +  F+  + G DAAA+A++    A A+  D +IIDT+GRL
Sbjct: 117 ATDTFRSAGMDQMRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRL 176

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H ++ L+  + K+  V  +  P APH  L  +DAT G N L QV++FH      GLI TK
Sbjct: 177 HTHTNLLKELQKIATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTK 236

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           ++G+A+GG L  I    KIP  F+G GE I+D EPF    F   + 
Sbjct: 237 VEGSAKGGSLFRIADELKIPTRFVGYGETIHDFEPFAIDRFLDKLL 282


>gi|301794326|emb|CBW36751.1| putative signal recognition particle 54 FtsY [Streptococcus
           pneumoniae INV104]
          Length = 425

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 168/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 122 EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 181

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+       S   +  F     V+L VGVNGVGKTT IGKL
Sbjct: 182 AKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKL 241

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +   AG KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 242 AHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVA 301

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+TGQNAL Q + 
Sbjct: 302 EGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKE 361

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   + 
Sbjct: 362 FSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKGLL 421


>gi|303319737|ref|XP_003069868.1| signal recognition particle protein, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240109554|gb|EER27723.1| signal recognition particle protein, putative [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 530

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 142/306 (46%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   ++D+  S  LD    D + +E+   L+ +D+ V + Q + + + +    
Sbjct: 3   LQDLGRRINAAVSDLTRSNDLDEKVFDSMLKEICAALLSADVNVRLVQNLRKSIKSSVNF 62

Query: 77  KDVSVQRVLYDVSEL-----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ++ P S+PF      R +VI+ VG+ G GKTT   KL
Sbjct: 63  SSIPPAVNKKRLIQKAVFDQLVALVDPHSEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A +   + + 
Sbjct: 122 ARHYQTRGFKSALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAADGVAKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K +V+I+DT+GR      L A + ++   +K      P   + VLD++ GQ A  Q   
Sbjct: 182 EKFEVIIVDTSGRHKQEEDLFAEMTQIQNAVK------PDQTILVLDSSIGQAAEAQSAA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + 
Sbjct: 236 FKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|225859038|ref|YP_002740548.1| cell division protein FtsY [Streptococcus pneumoniae 70585]
 gi|225720698|gb|ACO16552.1| cell division protein FtsY [Streptococcus pneumoniae 70585]
          Length = 425

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 168/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 122 EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 181

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+       S   +  F     V+L VGVNGVGKTT IGKL
Sbjct: 182 AKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKL 241

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +   AG KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 242 AHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVA 301

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+TGQNAL Q + 
Sbjct: 302 EGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKE 361

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   + 
Sbjct: 362 FSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKGLL 421


>gi|238879597|gb|EEQ43235.1| signal recognition particle 54 kDa protein [Candida albicans WO-1]
          Length = 556

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 145/322 (45%), Gaps = 35/322 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV---REELEDLLIRSDIGVAVAQKIVEELLTK---- 73
            A    +L+  ++ + S    DD +    +++   L+ SD+ V +  K+   +  K    
Sbjct: 3   LADLGSRLRGALSSVESGS--DDEIQQMIKDICSALLESDVNVKLVAKLRGNIKNKIDES 60

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLS-------KPFNWDFSHRP-------------HV 113
             +K+ S       + ++I   L  L        KP     S +              HV
Sbjct: 61  NVSKETSAMNKRKKLQKIIFDELCALVDSNVEPPKPKKLSTSTKTINGKKVRLSKESSHV 120

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+ VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A + +  +  S 
Sbjct: 121 IMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSY 180

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +  D   +A+E  ++ + +K D++I+DT+GR      L   + ++   ++      P   
Sbjct: 181 LEPDPVKIAFEGVQKFKQEKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ------PTQT 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + V+D + GQ A  Q   F   +    +I+TKMDG A+GGG I  V   K P+ F+G GE
Sbjct: 235 IMVMDGSIGQAAESQARAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGE 294

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
            + DLE F    F + + G  D
Sbjct: 295 HVGDLEIFKPTTFISKLLGIGD 316


>gi|119183283|ref|XP_001242701.1| hypothetical protein CIMG_06597 [Coccidioides immitis RS]
          Length = 530

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 140/305 (45%), Gaps = 14/305 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   ++D+  S  LD    D + +E+   L+ +D+ V + Q + + + +    
Sbjct: 3   LQDLGRRINAAVSDLTRSNDLDEKVFDSMLKEICAALLSADVNVRLVQNLRKSIKSSVNF 62

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLS 132
             +        +  + +   L+ L  P    F  +    +VI+ VG+ G GKTT   KL+
Sbjct: 63  SSIPPAVNKKRLIQKAVFDQLVALVDPHTEPFKPKKGRSNVIMFVGLQGAGKTTTCTKLA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A +   + + +
Sbjct: 123 RHYQTRGFKSALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAADGVAKFKKE 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K +V+I+DT+GR      L A + ++   +K      P   + VLD++ GQ A  Q   F
Sbjct: 183 KFEVIIVDTSGRHKQEEDLFAEMTQIQNAVK------PDQTILVLDSSIGQAAEAQSAAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + G
Sbjct: 237 KATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLG 296

Query: 313 CLDYG 317
             D  
Sbjct: 297 MGDMA 301


>gi|320034158|gb|EFW16103.1| signal recognition particle protein SRP54 [Coccidioides posadasii
           str. Silveira]
          Length = 530

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 142/306 (46%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   ++D+  S  LD    D + +E+   L+ +D+ V + Q + + + +    
Sbjct: 3   LQDLGRRINAAVSDLTRSNDLDEKVFDSMLKEICAALLSADVNVRLVQNLRKSIKSSVNF 62

Query: 77  KDVSVQRVLYDVSEL-----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ++ P S+PF      R +VI+ VG+ G GKTT   KL
Sbjct: 63  SSIPPAVNKKRLIQKAVFDQLVALVDPHSEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A +   + + 
Sbjct: 122 ARHYQTRGFKSALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAADGVAKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K +V+I+DT+GR      L A + ++   +K      P   + VLD++ GQ A  Q   
Sbjct: 182 EKFEVIIVDTSGRHKQEEDLFAEMTQIQNAVK------PDQTILVLDSSIGQAAEAQSAA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + 
Sbjct: 236 FKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|255348387|ref|ZP_05380394.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis 70]
 gi|255502928|ref|ZP_05381318.1| signal recognition particle, subunit FFH/SRP54 [Chlamydia
           trachomatis 70s]
          Length = 448

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 20/305 (6%)

Query: 22  ASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           +S S KL    + + +++R+ +        E+   L+ +D+     +  + ++  K   +
Sbjct: 3   SSLSQKLSNIFSSLFTAKRVTEESISDSIREVRLALLDADVNYQAVKDFIAKVKQKVVGE 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V       Q+ +  + E +   L   S+         P VIL+ G+ G GKTT   KL+
Sbjct: 63  EVWKHVSPGQQFIKCLHEELSSSLA--SEQTAVSLRGCPAVILLCGLQGAGKTTTCAKLT 120

Query: 133 KKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
                     KV++A+ D  R +A++QL+    +T ADF   E G+D   +A EA + A+
Sbjct: 121 DYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGADFFRRE-GNDPVDMAAEAVQHAK 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           ++  D++++DTAGRLH +  LM  +  + RV       +P   L V++   GQ+A+   +
Sbjct: 180 SQGYDLVLVDTAGRLHVDDALMDELVAVARV------TSPCETLFVMNLAMGQDAVVTAK 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG++++  DG AR G ++ +      P+ F G GE I DL PF A+  +  I
Sbjct: 234 AFDERLGLTGVVVSMADGDARAGAVLSVRSLLNKPIKFEGCGEKIKDLRPFNAQSMAERI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|239612234|gb|EEQ89221.1| signal recognition particle protein SRP54 [Ajellomyces dermatitidis
           ER-3]
 gi|327353181|gb|EGE82038.1| signal recognition particle protein [Ajellomyces dermatitidis ATCC
           18188]
          Length = 533

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 143/309 (46%), Gaps = 22/309 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTK--- 73
                 ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + +      
Sbjct: 3   LQDLGRRINAAVNDLTRSNNLDEQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPF 62

Query: 74  -----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                   K   +Q+ ++D    +  ++ P ++PF      R +VI+ VG+ G GKTT  
Sbjct: 63  SSLPPAVNKKRLIQKTVFDQ---LVALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTC 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL++     G +  L   DTFR+ A DQLK  A +    +  S   +D A +A E   +
Sbjct: 119 TKLARHYQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAK 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + ++ D++I+DT+GR      L   + ++   +K      P   + VLD T GQ A  Q
Sbjct: 179 FKKERFDIIIVDTSGRHKQEEDLFTEMTQIQTAIK------PDQTILVLDGTIGQAAESQ 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F A A    +I+TK DG+A GGG I  V     P+ FLG GE + DLE F  K F  
Sbjct: 233 SAAFKATADFGAIIITKTDGSAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQ 292

Query: 309 VITGCLDYG 317
            + G  D  
Sbjct: 293 KLLGMGDMA 301


>gi|254974795|ref|ZP_05271267.1| putative signal recognition particle [Clostridium difficile
           QCD-66c26]
 gi|255092183|ref|ZP_05321661.1| putative signal recognition particle [Clostridium difficile CIP
           107932]
 gi|255313922|ref|ZP_05355505.1| putative signal recognition particle [Clostridium difficile
           QCD-76w55]
 gi|255516601|ref|ZP_05384277.1| putative signal recognition particle [Clostridium difficile
           QCD-97b34]
 gi|255649701|ref|ZP_05396603.1| putative signal recognition particle [Clostridium difficile
           QCD-37x79]
 gi|260682857|ref|YP_003214142.1| putative signal recognition particle [Clostridium difficile CD196]
 gi|260686455|ref|YP_003217588.1| putative signal recognition particle [Clostridium difficile R20291]
 gi|260209020|emb|CBA62114.1| putative signal recognition particle [Clostridium difficile CD196]
 gi|260212471|emb|CBE03377.1| putative signal recognition particle [Clostridium difficile R20291]
          Length = 426

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 193/311 (62%), Gaps = 4/311 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +    + ++   +L +G       + + I +++ S  ++D+ + E+LE++LI +D+GV  
Sbjct: 117 EDKEDKKVNLFERLKQGLTKAKQGITDRIDEVLKSYTKIDEELLEDLEEILITADVGVNT 176

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I+E L  K   K ++    + + +  ++  +L   +     D    P +IL+VGVNG
Sbjct: 177 TMDIIERLRDKIKQKGITEPIKVREELKSIVEDILTNENS--TLDIEPAPCIILMVGVNG 234

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ +    G KV+LAA DTFR+AA +QL+IWA+RT+ D +  + G+D  A+
Sbjct: 235 VGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAV 294

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A K A+A+K DVLI DTAGRLHN + LM  +GK+ +++ R  P A   VL V+DATT
Sbjct: 295 VFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVLLVVDATT 354

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F  VA  TG+++TK+DGTA+GG ++ +     +PV  +GVGE + DL+ F
Sbjct: 355 GQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESVEDLQDF 414

Query: 302 VAKDFSAVITG 312
            AK FS  + G
Sbjct: 415 NAKSFSDALFG 425


>gi|261202392|ref|XP_002628410.1| signal recognition particle protein SRP54 [Ajellomyces dermatitidis
           SLH14081]
 gi|239590507|gb|EEQ73088.1| signal recognition particle protein SRP54 [Ajellomyces dermatitidis
           SLH14081]
          Length = 530

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 143/309 (46%), Gaps = 22/309 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTK--- 73
                 ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + +      
Sbjct: 3   LQDLGRRINAAVNDLTRSNNLDEQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPF 62

Query: 74  -----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                   K   +Q+ ++D    +  ++ P ++PF      R +VI+ VG+ G GKTT  
Sbjct: 63  SSLPPAVNKKRLIQKTVFDQ---LVALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTC 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL++     G +  L   DTFR+ A DQLK  A +    +  S   +D A +A E   +
Sbjct: 119 TKLARHYQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAK 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + ++ D++I+DT+GR      L   + ++   +K      P   + VLD T GQ A  Q
Sbjct: 179 FKKERFDIIIVDTSGRHKQEEDLFTEMTQIQTAIK------PDQTILVLDGTIGQAAESQ 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F A A    +I+TK DG+A GGG I  V     P+ FLG GE + DLE F  K F  
Sbjct: 233 SAAFKATADFGAIIITKTDGSAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQ 292

Query: 309 VITGCLDYG 317
            + G  D  
Sbjct: 293 KLLGMGDMA 301


>gi|148244853|ref|YP_001219547.1| cell division transporter substrate-binding protein FtsY
           [Candidatus Vesicomyosocius okutanii HA]
 gi|146326680|dbj|BAF61823.1| cell division transporter substrate-binding protein FtsY
           [Candidatus Vesicomyosocius okutanii HA]
          Length = 319

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 103/257 (40%), Positives = 159/257 (61%), Gaps = 3/257 (1%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +D+G+    KI++        K +     LY  + + + K+ +  +   N   +    VI
Sbjct: 63  ADVGINTTDKIIKSTRKNASRKTLKNAESLYQFLKDELAKLFIE-NNQLNISINET-FVI 120

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           LVVGVNG GKTT+IGKL+K   + G  VMLAAGDTFR+AAI+QLKIW  R +   V   +
Sbjct: 121 LVVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAAIEQLKIWGQRNNIPVVAKTL 180

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D A++ ++A++ AQAK +D+L+ DTAGRLH    LM  + K+ RV+ + + +APH  +
Sbjct: 181 GADTASVIFDAYQSAQAKNIDILLADTAGRLHTQDNLMQELAKIKRVITKQNINAPHETM 240

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+D  +GQN + Q + F+     +G+ +TK+DGTA+GGGL  I     +P+ ++G+GEG
Sbjct: 241 LVIDGGSGQNIINQAKEFNKAVNLSGISITKLDGTAKGGGLFSIADELNLPIRYIGIGEG 300

Query: 295 INDLEPFVAKDFSAVIT 311
           I+DL+ F  K+F   + 
Sbjct: 301 IDDLKIFQPKEFINALF 317


>gi|68475987|ref|XP_717934.1| hypothetical protein CaO19.3243 [Candida albicans SC5314]
 gi|68476118|ref|XP_717868.1| hypothetical protein CaO19.10753 [Candida albicans SC5314]
 gi|46439602|gb|EAK98918.1| hypothetical protein CaO19.10753 [Candida albicans SC5314]
 gi|46439670|gb|EAK98985.1| hypothetical protein CaO19.3243 [Candida albicans SC5314]
          Length = 556

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 145/322 (45%), Gaps = 35/322 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV---REELEDLLIRSDIGVAVAQKIVEELLTK---- 73
            A    +L+  ++ + S    DD +    +++   L+ SD+ V +  K+   +  K    
Sbjct: 3   LADLGSRLRGALSSVESGS--DDEIQQMIKDICSALLESDVNVKLVAKLRGNIKNKIDES 60

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLS-------KPFNWDFSHRP-------------HV 113
             +K+ S       + ++I   L  L        KP     S +              HV
Sbjct: 61  NVSKETSAMNKRKKLQKIIFDELCALVDSNVEPPKPKKLSTSTKTINGKKVRLSKESSHV 120

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+ VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A + +  +  S 
Sbjct: 121 IMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSY 180

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +  D   +A+E  ++ + +K D++I+DT+GR      L   + ++   ++      P   
Sbjct: 181 LEPDPVKIAFEGVQKFKQEKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ------PTQT 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + V+D + GQ A  Q   F   +    +I+TKMDG A+GGG I  V   K P+ F+G GE
Sbjct: 235 IMVMDGSIGQAAESQARAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGE 294

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
            + DLE F    F + + G  D
Sbjct: 295 HVGDLEIFKPTTFISKLLGIGD 316


>gi|255716822|ref|XP_002554692.1| KLTH0F11374p [Lachancea thermotolerans]
 gi|238936075|emb|CAR24255.1| KLTH0F11374p [Lachancea thermotolerans]
          Length = 534

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 145/306 (47%), Gaps = 17/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73
            A    ++   +   +S+ + D     D + + +   L+ SD+ + +   +   +  K  
Sbjct: 3   LADLGKRINSAVNSALSNSQDDYVTTVDVMLKTIVTALLESDVNIKLVFSLRNNIRAKLL 62

Query: 74  -RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIG 129
              ++  +  +    + + +   L  L       F     + +VI+ VG+ G GKTT   
Sbjct: 63  DVKSRSTNNAQTKKLIQKTVFDELCNLVDGETEPFQPKKRKQNVIMFVGLQGSGKTTSCT 122

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+   S  G KV L   DTFR+ A DQLK  A +    F  S   ++   +A E   + 
Sbjct: 123 KLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIKARIPFYGSYTETNPVKVAAEGVAKF 182

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +K +V+I+DT+GR      L   + ++ +V+K      P+  + VLDA+ GQ A +Q 
Sbjct: 183 KKEKFEVIIVDTSGRHRQEEELFQEMVEISQVVK------PNQTIMVLDASIGQAAEQQS 236

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F   +    +I+TKMDG A+GGG I  V   K P+ F+G GE ++D E F  K F + 
Sbjct: 237 KAFKDSSDFGAIILTKMDGHAKGGGAISAVAATKTPIIFIGTGEHVHDFEKFSPKSFISK 296

Query: 310 ITGCLD 315
           + G  D
Sbjct: 297 LLGIGD 302


>gi|16082103|ref|NP_394537.1| signal recognition particle protein [Thermoplasma acidophilum DSM
           1728]
 gi|10640391|emb|CAC12205.1| probable signal recognition particle protein [Thermoplasma
           acidophilum]
          Length = 288

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 161/287 (56%), Gaps = 10/287 (3%)

Query: 26  LKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
            KLK+   +I   +++D D V +E+   L+ +D+ +  A+ +   +  K   K+ +    
Sbjct: 3   EKLKKKFAEIFHRKKIDPDEVADEIPLKLVEADVSLEAAEDLASLVRNKL--KEDTTLDP 60

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
              +S  I +M+ P  K    + + +P V+L +G+NG GKTT IGK +  +   G  V++
Sbjct: 61  NEVLSSSILEMM-PEYKFDVLNVNKKPFVVLFLGINGTGKTTTIGKFAHYLKRNGKSVVI 119

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+ AI+Q+ +       + +  + GSD +++A++A + A+A+ +D ++IDTAGR
Sbjct: 120 AAADTFRAGAIEQISLIGREAGTEVIRHDRGSDPSSVAFDAIEHARARNIDYVLIDTAGR 179

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           ++ N  L+  + K+ RV K      P   L V+DA +GQ+++ Q  MF    G  G+I+T
Sbjct: 180 MNTNKNLLDEMKKIKRVSK------PDLTLLVIDAVSGQDSVNQARMFEENVGYDGVIVT 233

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K+D  ARGG ++ I    K PV F+  G+G++D+ PF    +   + 
Sbjct: 234 KLDTDARGGSILSIYHDLKKPVLFVCTGQGLDDIMPFDRNWYVRKLI 280


>gi|148377470|ref|YP_001256346.1| cell division protein FtsY [Mycoplasma agalactiae PG2]
 gi|148291516|emb|CAL58902.1| Cell division protein FtsY [Mycoplasma agalactiae PG2]
          Length = 354

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 111/313 (35%), Positives = 185/313 (59%), Gaps = 9/313 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + K   G + +S  L   + D+ +  +++D+   +ELE++LI SDI   +   I+  +  
Sbjct: 44  LEKYQAGLSKSS-SLGAKLLDLSNKYKKIDEEYFDELEEILIMSDISAKLVYAIITYIKN 102

Query: 73  KRYAKDVSVQRVLYDVSE----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +   ++++  + + ++      +++     +    N +   R ++++ +GVNG GKTT I
Sbjct: 103 EVKIRELTSTKDIGELIADQMFVVYTNKSVVDTTLNVE-DDRLNILIFIGVNGSGKTTSI 161

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFK 187
            K++ K    G KV++AA DTFR+ A+DQ+ IW++R  AD V   + G+D A++ Y A +
Sbjct: 162 AKVAHKYIKEGKKVLIAAADTFRAGAVDQIAIWSERVGADIVKPIKEGADPASVVYSALE 221

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+A+  D+L+IDTAGRL N   LM  + KM  ++ +    APH  L VLDATTGQN + 
Sbjct: 222 KAKAENYDLLLIDTAGRLQNKINLMNELKKMYSIINKFQEGAPHECLLVLDATTGQNGVS 281

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F  VA  TG+I+TKMDGT++GG ++ I     I V +LG+GEG++DL+ F   +F 
Sbjct: 282 QAKAFSEVANPTGIILTKMDGTSKGGIVLSIKDEFNINVKYLGLGEGLDDLQEFDLDNFI 341

Query: 308 AVITG-CLDYGEE 319
             +T   +D  EE
Sbjct: 342 YEMTKDLIDKNEE 354


>gi|71015804|ref|XP_758844.1| hypothetical protein UM02697.1 [Ustilago maydis 521]
 gi|46098350|gb|EAK83583.1| hypothetical protein UM02697.1 [Ustilago maydis 521]
          Length = 638

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 86/330 (26%), Positives = 141/330 (42%), Gaps = 41/330 (12%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTK--- 73
            +    ++     D+     +D    D + + + + LI +D+ V +   +  ++ ++   
Sbjct: 3   LSDLGRRINSAFQDLSKVPTVDAASIDQLLKSVCNALIEADVNVKLVANLRSQVKSQVTA 62

Query: 74  ----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFN------------------------W 105
               +   + S  +    V + +   L+ L  P +                         
Sbjct: 63  LLNDKTNANWSDAQRRQRVQKAVFDHLVALVDPLHGQTKTDDDSGAVVASANAGPGDIFK 122

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               +P+VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A + 
Sbjct: 123 PKKGKPNVIMFVGLQGSGKTTSCTKLALYYQKRGFKTGLVCADTFRAGAFDQLKQNASKI 182

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +  F  S   +D  A++       +  + +V+I+DT+GR      L   + ++   +   
Sbjct: 183 NVPFYGSYTETDPVAISAAGVASFKQNRFEVIIVDTSGRHKQEQELFDEMREIDTAVT-- 240

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P   + VLDA  GQ A  Q   F   AG   +I+TK+DG A+GGG I  V   K P
Sbjct: 241 ----PDLTIMVLDANIGQAAEAQSRAFKQAAGYGAIIVTKLDGHAKGGGAISAVAATKTP 296

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G GE   DLEPF A+ F + + G  D
Sbjct: 297 IMFIGTGEHAADLEPFRAQPFISKLLGMGD 326


>gi|169833825|ref|YP_001694674.1| cell division protein FtsY [Streptococcus pneumoniae Hungary19A-6]
 gi|168996327|gb|ACA36939.1| cell division protein FtsY [Streptococcus pneumoniae Hungary19A-6]
          Length = 425

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 168/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 122 EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 181

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+       S   +  F     V+L VGVNGVGKTT IGKL
Sbjct: 182 AKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKL 241

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +   AG KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 242 AHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVA 301

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+TGQNAL Q + 
Sbjct: 302 EGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKE 361

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   + 
Sbjct: 362 FSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKGLL 421


>gi|261749270|ref|YP_003256955.1| signal recognition particle protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497362|gb|ACX83812.1| signal recognition particle protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 450

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F     KL +    +  + ++ +       +E+   LI +D+   +A+  V+++  K   
Sbjct: 2   FKHLQKKLNKAFHILKGNSKITEINIAETMKEIRRALIDADVNYKIAKTFVQKVKEKSIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V       Q ++  V + +  ++   ++  N   S+ P +IL+ G+ G GKT+   KL
Sbjct: 62  KKVLTSLNPKQLIIKLVYDELVTLMGKKNREIN--ISNNPSIILICGLQGSGKTSFSSKL 119

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +        +L A D +R AAIDQLKI AD+        +   +   +  ++   A 
Sbjct: 120 AFFLCRKKNKNPLLVAADIYRPAAIDQLKIIADKVHLPVFFLKENKNVIEIIEKSLIYAS 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            KK +V+IIDTAGRL  +  +M  I K+ +         P   L V+D+ TGQ+A+   +
Sbjct: 180 KKKYNVVIIDTAGRLAIDKKMMDEIQKISQYSN------PDETLFVVDSMTGQDAINTAQ 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +F       G++MTK+DG +RGG  I +      P+ F+  GE I D+E F  +  +  I
Sbjct: 234 IFSHTLNFDGIVMTKLDGDSRGGAAITMSSVIGKPIKFISNGEKIEDIEIFYPERIANRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|225557139|gb|EEH05426.1| signal recognition particle protein SRP54 [Ajellomyces capsulatus
           G186AR]
          Length = 527

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 142/309 (45%), Gaps = 22/309 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTK--- 73
                 ++   + D+  S  +D    D + +E+   L+ +D+ V + Q + + +      
Sbjct: 3   LQDLGRRINAAVNDLTRSNNVDAQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPF 62

Query: 74  -----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                   K   +Q+ ++D    +  ++ P ++PF      R +VI+ VG+ G GKTT  
Sbjct: 63  SSLPPAVNKKRLIQKTVFDQ---LVALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTC 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL++     G +  L   DTFR+ A DQLK  A +    +  S   +D A +A E   +
Sbjct: 119 TKLARHYQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAK 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + ++ D++I+DT+GR      L   + ++   +K      P   + VLD T GQ A  Q
Sbjct: 179 FKKERFDIIIVDTSGRHKQEEDLFVEMTQIQTAIK------PDQTILVLDGTIGQAAESQ 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F  
Sbjct: 233 SAAFKAAADFGAIIITKTDGNAAGGGAISAVAATHTPIIFLGTGEHMLDLERFSPKPFIQ 292

Query: 309 VITGCLDYG 317
            + G  D  
Sbjct: 293 KLLGMGDMA 301


>gi|240277685|gb|EER41193.1| signal recognition particle protein [Ajellomyces capsulatus H143]
 gi|325093770|gb|EGC47080.1| signal recognition particle protein SRP54 [Ajellomyces capsulatus
           H88]
          Length = 527

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 142/309 (45%), Gaps = 22/309 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTK--- 73
                 ++   + D+  S  +D    D + +E+   L+ +D+ V + Q + + +      
Sbjct: 3   LQDLGRRINAAVNDLTRSNNVDAQAFDAMIKEICAALLSADVNVRLVQSLRKSIKAAVPF 62

Query: 74  -----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                   K   +Q+ ++D    +  ++ P ++PF      R +VI+ VG+ G GKTT  
Sbjct: 63  SSLPPAVNKKRLIQKTVFDQ---LVALVDPHAEPFKPK-KGRSNVIMFVGLQGAGKTTTC 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL++     G +  L   DTFR+ A DQLK  A +    +  S   +D A +A E   +
Sbjct: 119 TKLARHYQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYFGSLTQTDPAVVAAEGVAK 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + ++ D++I+DT+GR      L   + ++   +K      P   + VLD T GQ A  Q
Sbjct: 179 FKKERFDIIIVDTSGRHKQEEDLFVEMTQIQTAIK------PDQTILVLDGTIGQAAESQ 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F  
Sbjct: 233 SAAFKAAADFGAIIITKTDGNAAGGGAISAVAATHTPIIFLGTGEHMLDLERFSPKPFIQ 292

Query: 309 VITGCLDYG 317
            + G  D  
Sbjct: 293 KLLGMGDMA 301


>gi|126698847|ref|YP_001087744.1| putative signal recognition particle [Clostridium difficile 630]
 gi|115250284|emb|CAJ68106.1| signal recognition particle receptor [Clostridium difficile]
          Length = 426

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 193/311 (62%), Gaps = 4/311 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +    + ++   +L +G       + + I +++ S  ++D+ + E+LE++LI +D+GV  
Sbjct: 117 EDKEDKKVNLFERLKQGLTKAKQGITDRIDEVLKSYTKIDEELLEDLEEILITADVGVNT 176

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              I+E L  K   K ++    + + +  ++  +L   +     D    P +IL+VGVNG
Sbjct: 177 TMDIIERLRDKIKQKGITEPIKVREELKSIVEDILTNENS--TLDIEPAPCIILMVGVNG 234

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKTT IGKL+ +    G KV+LAA DTFR+AA +QL+IWA+RT+ D +  + G+D  A+
Sbjct: 235 VGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAV 294

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A K A+A+K DVLI DTAGRLHN + LM  +GK+ +++ R  P A   VL V+DATT
Sbjct: 295 VFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVLLVVDATT 354

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQNA+ Q + F  VA  TG+++TK+DGTA+GG ++ +     +PV  +GVGE + DL+ F
Sbjct: 355 GQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESVEDLQDF 414

Query: 302 VAKDFSAVITG 312
            AK FS  + G
Sbjct: 415 NAKSFSDALFG 425


>gi|149019235|ref|ZP_01834597.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP23-BS72]
 gi|225854709|ref|YP_002736221.1| cell division protein FtsY [Streptococcus pneumoniae JJA]
 gi|147931105|gb|EDK82084.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP23-BS72]
 gi|225722901|gb|ACO18754.1| cell division protein FtsY [Streptococcus pneumoniae JJA]
          Length = 425

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 168/300 (56%), Gaps = 3/300 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 122 EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 181

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              ++      L    + +L+       S   +  F     V+L VGVNGVGKTT IGKL
Sbjct: 182 AKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGVNGVGKTTSIGKL 241

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +   AG KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A A
Sbjct: 242 AHRYKRAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERAVA 301

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+TGQNAL Q + 
Sbjct: 302 EGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQAKE 361

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   + 
Sbjct: 362 FSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKGLL 421


>gi|147919502|ref|YP_686758.1| signal recognition particle protein Srp54 [uncultured methanogenic
           archaeon RC-I]
 gi|121687852|sp|Q0W2G1|SRP54_UNCMA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|110622154|emb|CAJ37432.1| signal recognition particle [uncultured methanogenic archaeon RC-I]
          Length = 444

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 142/301 (47%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    LK+ +  I +S ++D    D V ++++  +I++D+ V +  K+   +  +   
Sbjct: 3   LDNLGTSLKDALRKIANSGKIDKEVIDEVVKDIQRAMIQADVNVKLVMKLSSTIKNRALT 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +         + V  +++  L+ +        + +   I++VG+ G GKTT   K+++  
Sbjct: 63  EAPPAGMNSKEHVLRIVYTELVNIVGKAT-PVALQSQTIMMVGLQGSGKTTTSAKIARYF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           +  GLK  +   DT+R  A DQLK   D+    F       DA A+     K+    K D
Sbjct: 122 ARKGLKPAVICADTYRPGAYDQLKQLCDKLGVGFYGEAGNKDAVAIVRNGLKEMA--KYD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I+DTAGR    + L+  +  +  + K          L VLDA  GQ A  Q   F+  
Sbjct: 180 VKIVDTAGRHALETDLIQEMKDIYGLTK------FDHKLLVLDAAIGQQASEQARAFNDA 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G TG+++TK+DGTA+GGG +  V      + F+GVGE  +D+E F    F + + G  D
Sbjct: 234 IGITGVVITKLDGTAKGGGALSAVSDTNTSIAFIGVGETPDDMERFDPDGFISRLLGMGD 293

Query: 316 Y 316
            
Sbjct: 294 L 294


>gi|166154164|ref|YP_001654282.1| cell division protein [Chlamydia trachomatis 434/Bu]
 gi|166155039|ref|YP_001653294.1| cell division protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335408|ref|ZP_07223652.1| cell division protein [Chlamydia trachomatis L2tet1]
 gi|165930152|emb|CAP03636.1| Cell Division Protein [Chlamydia trachomatis 434/Bu]
 gi|165931027|emb|CAP06590.1| Cell Division Protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 284

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/286 (36%), Positives = 146/286 (51%), Gaps = 10/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
               +  +   R L   + E  E LL   D G  + +   EEL   +   +         
Sbjct: 5   FGNKLRSLF-KRTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRRCKNPDE-------RA 56

Query: 88  VSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           V ELI   L  +    P     S RP   LV+G NG GKTT + KL+        KV++ 
Sbjct: 57  VKELIRSFLSKIISKLPQREPLSVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLIV 116

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFRSA +DQ++ WA+  +  F+  + G DAAA+A++    A A+  D +IIDT+GRL
Sbjct: 117 ATDTFRSAGMDQMRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRL 176

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H ++ L+  + K+  V  +  P APH  L  +DAT G N L QV++FH      GLI TK
Sbjct: 177 HTHTNLLKELQKIATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTK 236

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           ++G+A+GG L  I    KIP  F+G GE I+D EPF    F   + 
Sbjct: 237 VEGSAKGGSLFRIADELKIPTRFVGYGETIHDFEPFAIDRFLDKLL 282


>gi|291455918|ref|ZP_06595308.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           breve DSM 20213]
 gi|291382327|gb|EFE89845.1| signal recognition particle-docking protein FtsY [Bifidobacterium
           breve DSM 20213]
          Length = 421

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 107/315 (33%), Positives = 176/315 (55%), Gaps = 7/315 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           +  +      S + +L    A +     + + DI++   L +   E++ED L+ +D+G  
Sbjct: 108 AKTETPESVGSRLTRLKAKLAKSGNPFGKALFDILAKDNLSESDWEDVEDTLLLADVGAE 167

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWD--FSHRPHVILVV 117
            + ++V++L T       +    +      +L+  +     +  N +   +++P VI++V
Sbjct: 168 ASAQLVDDLKTDARITGKADPAEVRATLKDKLLDLVGRDTDRRLNVEKPGANKPGVIIMV 227

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGS 176
           GVNG GKTT  GKL++       +V++ A DTFR+AA DQL+ W  R +   V   + G+
Sbjct: 228 GVNGTGKTTTAGKLARLFVSEDKQVIMGAADTFRAAAADQLETWGARVNVPVVRADKDGA 287

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A+EA  +A+    DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL V
Sbjct: 288 DPASVAFEASAKAKEANADVLIIDTAGRLQNKANLMDELGKIRRVTEKNLP--VDEVLLV 345

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q ++F    G TG++++K+DG+A+GG +I +     +PV  +G+GEG +
Sbjct: 346 LDATTGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVISVQKELGVPVKLVGLGEGPD 405

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF  + F   I 
Sbjct: 406 DLAPFDPEGFVDGIL 420


>gi|124024722|ref|YP_001013838.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. NATL1A]
 gi|123959790|gb|ABM74573.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. NATL1A]
          Length = 431

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 177/312 (56%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + + + + W+ +L +G   T       + + +    L   V ++LE LL+R+D GV+   
Sbjct: 117 QFSLDDIDWLSRLKQGLEKTRKGFVTDLLEKLGDDPLTPEVLDDLETLLLRADAGVSATD 176

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP----HVILVVGVN 120
           +I+E L TK   + V     L  + E +  +L    K    D         ++ ++VGVN
Sbjct: 177 QILESLRTKLNEEVVEASEGLRFLKEQLVNVLEKPIKDSGADLLSPQKGCLNIWMLVGVN 236

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+     +G   M+AA DTFR+AA+ Q+K+W DRT  + + +E  + D A
Sbjct: 237 GVGKTTTLGKLASVAKRSGFSAMIAAADTFRAAAVQQVKVWGDRTGVEVIANESKNADPA 296

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A   +++K +D+L++DTAGRL   + LM  + K+ +++ +L P A    L VLD+
Sbjct: 297 SIVFDAIGASKSKNIDLLLVDTAGRLQTKNNLMEELKKIRKIIDKLAPKANVESLLVLDS 356

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN LRQ   F   A  TG+I+TK+DG+++GG  + +    K+PV F+G GE I DL 
Sbjct: 357 SQGQNGLRQALAFADSAELTGVILTKLDGSSKGGVAMAVASEAKLPVRFIGAGEKIRDLR 416

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 417 PFNSFEFIEALL 428


>gi|330723529|gb|AEC45899.1| signal recognition particle-docking protein FtsY [Mycoplasma
           hyorhinis MCLD]
          Length = 380

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 183/315 (58%), Gaps = 10/315 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVA 61
            Q++  E +    K   G    ++ L E + ++  S+ + D+   E+LE++LI SDI   
Sbjct: 60  KQELKEEKI---DKYVAGLTKANISLSEQLIELQRSKLKADEEYFEQLEEILIMSDISPF 116

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSE----LIHKMLMPLSKPFNWDFSHRPHVILVV 117
               I++EL  +   +++S  +++ ++       I+     ++   N     R ++IL++
Sbjct: 117 FVDVIIDELKKEVKKQNISDSKLINELIADKMYTIYANRSIINTHLNIK-DGRLNIILMI 175

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS- 176
           GVNG GKTT I K++ ++   G K+++AAGDTFR+AA++QL+IWA+R  AD +       
Sbjct: 176 GVNGSGKTTSISKIANQLKKEGKKILIAAGDTFRAAAVEQLEIWANRVGADILKPNPNEF 235

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D  ++ Y A ++A+++  DVLIIDTAGRL N   LM  + K+ +V++   P APH  L V
Sbjct: 236 DPGSVVYRAIEKAESENYDVLIIDTAGRLQNKVNLMNELKKVNKVIQNKYPDAPHESLLV 295

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q + F      +G+++TKMDGT++GG +  I     + V  +G+GE ++
Sbjct: 296 LDATTGQNGISQAKHFKEATPVSGIVLTKMDGTSKGGIIFSIKDELDMDVKLIGLGEKMD 355

Query: 297 DLEPFVAKDFSAVIT 311
           DL+ F   +F   +T
Sbjct: 356 DLQEFNLDNFIYALT 370


>gi|322376799|ref|ZP_08051292.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           M334]
 gi|321282606|gb|EFX59613.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           M334]
          Length = 420

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 118/302 (39%), Positives = 171/302 (56%), Gaps = 7/302 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 117 EKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQVASNLTEELRYE 176

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVVGVNGVGKTTVIG 129
              ++      L  V  +I K++    K  N+D    F     V+L VGVNGVGKTT IG
Sbjct: 177 AKLENAKKPDALRRV--IIEKLVELYEKDGNYDESIHFQDGLTVMLFVGVNGVGKTTSIG 234

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A
Sbjct: 235 KLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGAEKADPASVVFDGMERA 294

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+ +D+L+IDTAGRL N   LMA + K+ R++KR+   APH     LDA+TGQNAL Q 
Sbjct: 295 VAESIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVSEAPHETFLALDASTGQNALVQA 354

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   
Sbjct: 355 KEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKG 414

Query: 310 IT 311
           + 
Sbjct: 415 LL 416


>gi|148998676|ref|ZP_01826115.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP11-BS70]
 gi|147755513|gb|EDK62561.1| signal recognition particle-docking protein FtsY [Streptococcus
           pneumoniae SP11-BS70]
          Length = 425

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 169/312 (54%), Gaps = 3/312 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             +      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 110 EPERPQAEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 169

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           VA  + EEL  +   ++      L    + +L+       S   +  F     V+L VGV
Sbjct: 170 VASNLTEELRYEAKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGV 229

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+     AG KVML A DTFR+ A+ QL  W  R     V     +D A
Sbjct: 230 NGVGKTTSIGKLAHCYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPA 289

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA
Sbjct: 290 SVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDA 349

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+ 
Sbjct: 350 STGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIG 409

Query: 300 PFVAKDFSAVIT 311
            F +++F   + 
Sbjct: 410 EFNSENFMKGLL 421


>gi|330444666|ref|YP_004377652.1| signal recognition particle protein [Chlamydophila pecorum E58]
 gi|328807776|gb|AEB41949.1| signal recognition particle protein [Chlamydophila pecorum E58]
          Length = 449

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 142/304 (46%), Gaps = 19/304 (6%)

Query: 23  STSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           S + KL    + + +S+R+ +        E+   L+ +D+   V +  + ++  K   + 
Sbjct: 4   SLARKLSSIFSSLATSQRITEENIASSIREVRLALLDADVYYPVVKDFIAKVKQKVIGEK 63

Query: 79  V-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           V       Q+ +  + E +  +L    K         P V+L+ G+ G GKTT   KL+ 
Sbjct: 64  VWKHVSPGQQFIRCLHEELTTLLGNSDKE-ELIIQGNPSVVLLCGLQGAGKTTTCAKLAS 122

Query: 134 KMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            + + G   KV++   D  R AA+DQLK    +T AD   SE G +   +  EA + A+A
Sbjct: 123 YVIEEGKAKKVLVVPCDRKRFAAVDQLKTLIAQTQADLYQSE-GGNPVEITREALEYAKA 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D ++IDTAGRLH +  LM+ +  + +V +          L V++   GQ+A+   + 
Sbjct: 182 YNYDFVLIDTAGRLHLDDELMSELASIQKVSQAK------ERLFVMNLAMGQDAVATAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +   TG+I++  DG AR G ++ +      P+ F G GE I DL  F     +  I 
Sbjct: 236 FDDLLDLTGVIISMTDGDARAGAILSMKSVLGKPIKFEGCGERIRDLRLFNPASMADRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|317178547|dbj|BAJ56335.1| signal recognition particle protein [Helicobacter pylori F30]
          Length = 448

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 148/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++   L       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKETLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVISKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|313682715|ref|YP_004060453.1| signal recognition particle-docking protein ftsy [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155575|gb|ADR34253.1| signal recognition particle-docking protein FtsY [Sulfuricurvum
           kujiense DSM 16994]
          Length = 295

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/307 (33%), Positives = 169/307 (55%), Gaps = 15/307 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               + KG   T     E I  I   ++     ++ELE++L+ +D+   + + I+ EL  
Sbjct: 1   MFSFIKKGLQKT----IEAIAAIAPEKKAKIS-KDELENILLEADVEYDLVEIILRELYQ 55

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
               +D    ++L  ++          ++    D  ++P V L++GVNG GKTT I KL+
Sbjct: 56  NDITRDQLRSKLLATLA---------YAQNSLPDNPNKPTVTLIIGVNGAGKTTTIAKLA 106

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +   + G +V+L AGDTFR+AAI+QL  WAD+     V S  G D +A+AY+  + A+A+
Sbjct: 107 QHHLNKGERVILGAGDTFRAAAIEQLTRWADKLDVPIVSSRQGHDPSAVAYDTIESAKAR 166

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             + +IIDTAGRLH  + L   + K++R+  +    APH  + +LD T G +A+ Q + F
Sbjct: 167 GFEQVIIDTAGRLHTQTNLGNELKKIVRICDKAHTGAPHRKILILDGTQGSSAIAQAKAF 226

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           + + G  G+I+TK+DGTA+GG +  I     +P+ ++GVGE    L PF   +F   I  
Sbjct: 227 NEMIGVDGIIITKLDGTAKGGSVFSIAYALSLPILYIGVGEQPEHLIPFDKYEFVDGILD 286

Query: 313 CLDYGEE 319
            + +GEE
Sbjct: 287 AI-FGEE 292


>gi|304373199|ref|YP_003856408.1| Signal recognition particle protein [Mycoplasma hyorhinis HUB-1]
 gi|304309390|gb|ADM21870.1| Signal recognition particle protein [Mycoplasma hyorhinis HUB-1]
          Length = 445

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 145/306 (47%), Gaps = 20/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               S + ++    + +   L +     V  E++  L+ +D+ + + +  ++E+  K  A
Sbjct: 2   LDFLSKRFQKSFAKMNAKTTLKEEDLNEVIREIKLALLEADVNLLIVKDFIKEIKEKALA 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +++      Q+ +  V+E + ++L    KP    ++     I++VG+ G GKTT + KL
Sbjct: 62  TEITSTLNPQQQFIKIVNENLVQVLGE--KPKQIKYNRPIEKIVLVGLQGSGKTTTVAKL 119

Query: 132 SKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +          K +L A D +R AAI+QL     + +     S+  S    +       A
Sbjct: 120 AHFSLRKKHIQKPLLIAADIYRPAAIEQLIQLGKQINIPVF-SQKDSTPQEIVSAGLDYA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            +   D++IIDTAGRL  +  LM  +  + ++ K      PH +  V DA +GQ+ +   
Sbjct: 179 SSNDFDLVIIDTAGRLSIDEKLMQELKDIEKIAK------PHEIFFVADALSGQDIINVA 232

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     +G I+TK+D  ARGG  + ++   KIP+ F+G GE I + + F     ++ 
Sbjct: 233 KTFNENITLSGSIITKLDSDARGGAALSLIKLLKIPIVFIGTGEKITNFDLFYPDRMASR 292

Query: 310 ITGCLD 315
           I G  D
Sbjct: 293 ILGMGD 298


>gi|168575699|ref|ZP_02721614.1| cell division protein FtsY [Streptococcus pneumoniae MLV-016]
 gi|307067892|ref|YP_003876858.1| hypothetical protein SPAP_1268 [Streptococcus pneumoniae AP200]
 gi|183578203|gb|EDT98731.1| cell division protein FtsY [Streptococcus pneumoniae MLV-016]
 gi|306409429|gb|ADM84856.1| hypothetical protein SPAP_1268 [Streptococcus pneumoniae AP200]
          Length = 425

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 169/312 (54%), Gaps = 3/312 (0%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             +      +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 110 EPERPQAEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 169

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           VA  + EEL  +   ++      L    + +L+       S   +  F     V+L VGV
Sbjct: 170 VASNLTEELRYEAKLENAKKPDALRRVIIEKLVELYEKDGSYDESIHFQDNLTVMLFVGV 229

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+     AG KVML A DTFR+ A+ QL  W  R     V     +D A
Sbjct: 230 NGVGKTTSIGKLAHCYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPA 289

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++  ++A A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA
Sbjct: 290 SVVFDGMERAVAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDA 349

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           +TGQNAL Q + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+ 
Sbjct: 350 STGQNALVQAKEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIG 409

Query: 300 PFVAKDFSAVIT 311
            F +++F   + 
Sbjct: 410 EFNSENFMKGLL 421


>gi|294948604|ref|XP_002785803.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
 gi|239899911|gb|EER17599.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
          Length = 506

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 146/321 (45%), Gaps = 21/321 (6%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M    ++S+  S +R L K  +S + +  E +          +   +E+   L+++D+ V
Sbjct: 1   MVLNDLSSQLTSALRSLQKAASSLNEEDDEPL----------EECLKEIAKALLQADVNV 50

Query: 61  AVAQKIVEELLTKRYA-KDVSVQRVL---YDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
               K+ + + T+    +  ++ R       V + + K+L P   P       R +V++ 
Sbjct: 51  KYVSKLRQSIRTQMKLYEGAAINRHKTVRKLVFDELVKLLTPSRAPRTL-TKGRSNVVMF 109

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VG+ G GKTT   K +      G KV L   DTFR+ A DQL+  A +    F  S   +
Sbjct: 110 VGLQGSGKTTSCTKYALYYQRRGWKVALVCADTFRAGAFDQLRQNATKALIPFYGSHTIT 169

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D   +A E  +  + ++ D++I+DT+GR      L   + ++   +K      P  V+ V
Sbjct: 170 DPVQVASEGVELFKEERYDLIIVDTSGRHKQELALFDEMKQVSEAVK------PDDVIFV 223

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +D+  GQ    Q   F        +I+TK+DG A+GGG +  V     P+ F+G GE ++
Sbjct: 224 MDSHIGQACSAQAAAFSNAVDVGSVIITKLDGHAKGGGALSAVAATDSPIIFIGTGEHLD 283

Query: 297 DLEPFVAKDFSAVITGCLDYG 317
           D E F  K F   + G  D  
Sbjct: 284 DFERFEVKGFVGRLLGIGDLA 304


>gi|401118|sp|Q01442|SRP54_MYCMY RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|150210|gb|AAA25441.1| SRPM54 [Mycoplasma mycoides]
          Length = 447

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 82/302 (27%), Positives = 149/302 (49%), Gaps = 19/302 (6%)

Query: 24  TSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            S ++++ I   + +  L++       +E+   L+ +D+ +  A++I+  +  K     +
Sbjct: 7   LSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYI 66

Query: 80  SV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           S      Q+++  V E +  +L   + P   D + +P V+++VG+ G GKTT   KL+  
Sbjct: 67  SEGASAHQQMIKIVHEELVNILGKENAPL--DINKKPSVVMMVGLQGSGKTTTANKLAYL 124

Query: 135 MSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           ++    K +L  G D +R  AI+QL     +T+          D    A +A + A+   
Sbjct: 125 LNKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKG-KQDPVKTAEQALEYAKENN 183

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DV+I+DTAGRL  + +LM  +  + +        +P+ +L V+D  +GQ  +     F+
Sbjct: 184 FDVVILDTAGRLQVDQVLMKELDNLKK------KTSPNEILLVVDGMSGQEIINVTNEFN 237

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +G+++TK+DG ARGG  + I    K+P+ F+G GEG N L  F  K  +  + G 
Sbjct: 238 DKLKLSGVVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGM 297

Query: 314 LD 315
            D
Sbjct: 298 GD 299


>gi|313124889|ref|YP_004035153.1| signal recognition particle-docking protein ftsy [Halogeometricum
           borinquense DSM 11551]
 gi|312291254|gb|ADQ65714.1| signal recognition particle-docking protein FtsY [Halogeometricum
           borinquense DSM 11551]
          Length = 446

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 97/285 (34%), Positives = 155/285 (54%), Gaps = 14/285 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-DVSVQRVLYDVSELIH 93
           II    L+D + E LE  L+ SD+ + VA++I++ +  K   +    V+ +   V E +H
Sbjct: 166 IIEEEDLEDPLWE-LEMALLESDVEMHVAEEILDTIREKMVGETRRQVETMGQLVQEALH 224

Query: 94  KMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             L  +     +DF        +P  ++  GVNGVGKTT I K+++     GL V+LA G
Sbjct: 225 DALYDVISVGQFDFDQRIAEADKPVTLIFTGVNGVGKTTSIAKMARYFEKQGLSVVLANG 284

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT+R+ A +Q++  A+      +  E G D AA+ Y+A + A+A  +DV++ DTAGRLH 
Sbjct: 285 DTYRAGANEQIRKHAENLDTKIISHEQGGDPAAVIYDAVEYAEAHDIDVVLGDTAGRLHT 344

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           ++ LMA + K+ RV++      P   L V +A  GQ+A+ + + F+  A   G ++TK D
Sbjct: 345 SNDLMAQLEKIDRVVE------PDLTLFVDEAVAGQDAVERAKQFNEAAEIDGAVLTKAD 398

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             + GG  I I      P+ FLGVG+G +D+E F  +     + G
Sbjct: 399 ADSNGGAAISIAYVTGKPILFLGVGQGYDDIEQFDPERMVERLLG 443


>gi|118487996|gb|ABK95819.1| unknown [Populus trichocarpa]
          Length = 495

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 137/305 (44%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   I  + ++  +D+        E+   L++SD+   + + +   +      
Sbjct: 3   LAQLGGSISRAIQQMSNATIIDEKALNDCLNEITRALLQSDVQFKLVRDMQTNIKKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            D++       + +      + K+L P    F      +  V++ VG+ G GKTT   K 
Sbjct: 63  DDLAAGHNKRRIIQQAIFNELCKILDPGKSSFTPK-KGKTSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S   SD   +A E  +  + 
Sbjct: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAEEGVETFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D++I+DT+GR    + L+  + ++    K      P  ++ V+D++ GQ    Q + 
Sbjct: 182 ENCDLIIVDTSGRHKQEAALLEEMRQVSEATK------PDLIIFVMDSSIGQAPFDQAQA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +     +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F  K F + + 
Sbjct: 236 FKQMVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295

Query: 312 GCLDY 316
           G  D+
Sbjct: 296 GMGDW 300


>gi|331703417|ref|YP_004400104.1| signal recognition particle M54 protein [Mycoplasma mycoides subsp.
           capri LC str. 95010]
 gi|328801972|emb|CBW54126.1| Signal recognition particle M54 protein [Mycoplasma mycoides subsp.
           capri LC str. 95010]
          Length = 447

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 82/302 (27%), Positives = 149/302 (49%), Gaps = 19/302 (6%)

Query: 24  TSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            S ++++ I   + +  L++       +E+   L+ +D+ +  A++I+  +  K     +
Sbjct: 7   LSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYI 66

Query: 80  SV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           S      Q+++  V E +  +L   + P   D + +P V+++VG+ G GKTT   KL+  
Sbjct: 67  SEGASAHQQMIKIVHEELVNILGKENAPL--DINKKPSVVMMVGLQGSGKTTTANKLAYL 124

Query: 135 MSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           ++    K +L  G D +R  AI+QL     +T+          D    A +A + A+   
Sbjct: 125 LNKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKG-KQDPVKTAEQALEYAKENN 183

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DV+I+DTAGRL  + +LM  +  + +        +P+ +L V+D  +GQ  +     F+
Sbjct: 184 FDVVILDTAGRLQVDQVLMKELDNLKK------KTSPNEILLVVDGMSGQEIINVTNEFN 237

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +G+++TK+DG ARGG  + I    K+P+ F+G GEG N L  F  K  +  + G 
Sbjct: 238 DKLKLSGVVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGM 297

Query: 314 LD 315
            D
Sbjct: 298 GD 299


>gi|49471597|gb|AAT66124.1| signal recognition particle [Mycoplasma arthritidis]
          Length = 401

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 141/308 (45%), Gaps = 23/308 (7%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +++ K     + K+     DI+        V  E++  L+ +D+ + V +   + +  K 
Sbjct: 7   KRMQKSMDKINKKMSINEEDIL-------EVLREVKLALLEADVNLDVVRTFTKAVKEKA 59

Query: 75  YAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               +       Q VL    + +  +L   + P        P  I++VG+ G GKTT   
Sbjct: 60  LNAKIIGKLNQQQTVLKIFKDELTTILG--TNPIEISLKKIPTTIMMVGLQGSGKTTTAA 117

Query: 130 KLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           KL+       L    +L   D +R AA +QL+  A +T  DF   E       +A EA K
Sbjct: 118 KLATFFKKKKLCQNPLLVGDDIYRPAAREQLEQLAKQTQTDFFTKEKNDAIF-IAKEAIK 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A   + D++I+DTAGRL  +  LM  +  + + +       P  +L V+DA +GQ+ + 
Sbjct: 177 RANDNRNDLVIVDTAGRLAIDENLMDELINIKKAIH------PDYILLVVDAMSGQDVIN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             ++FH     +  I+TK+D  ARGG  + I    ++P+ F+G GE ++ +E F     +
Sbjct: 231 VAKIFHENLNLSATIITKLDSDARGGAALSITHLLEVPIAFIGTGEKLSGIEIFHPDRMA 290

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 291 NRILGMGD 298


>gi|282882963|ref|ZP_06291567.1| signal recognition particle-docking protein FtsY [Peptoniphilus
           lacrimalis 315-B]
 gi|281297170|gb|EFA89662.1| signal recognition particle-docking protein FtsY [Peptoniphilus
           lacrimalis 315-B]
          Length = 297

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 121/299 (40%), Positives = 182/299 (60%), Gaps = 4/299 (1%)

Query: 16  KLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           KL  G   T  ++   I  ++ +  ++DD + E+LED+LI +D+G+    K+++ L    
Sbjct: 1   KLMSGLDKTRKEVGIKINTVMGNYVKIDDDMLEDLEDILISADVGMDTTMKLIDNLRETI 60

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSK 133
             + ++    + D+ +   K L  +++  N   S   P +ILVVGVNGVGKTT IGKL+K
Sbjct: 61  IKEKINDPSKVKDILKSETKKL--MNEELNKGISDISPSIILVVGVNGVGKTTTIGKLAK 118

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +  D G  V++AA DTFR+AAIDQLK W +R + D +    G D AA+ ++A   A+++ 
Sbjct: 119 RYKDEGKSVLIAAADTFRAAAIDQLKEWGNRVNVDVISHSEGQDPAAVVFDAITAAKSRN 178

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+LI+DTAGRLHN + LM  + K+ R++ +  P A    L VLDATTGQNA+ Q + F 
Sbjct: 179 ADILIVDTAGRLHNKANLMKELEKINRIIDKKYPEAYRETLLVLDATTGQNAMNQAKTFK 238

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                TG+ +TK+DGTA+GG +I +    +IP+  +GVGEGI DL+ F   +F   I G
Sbjct: 239 EAVNITGIALTKLDGTAKGGVVIALQSELQIPIKLVGVGEGIYDLQDFNLDNFLQGIFG 297


>gi|268679516|ref|YP_003303947.1| signal recognition particle-docking protein FtsY [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617547|gb|ACZ11912.1| signal recognition particle-docking protein FtsY [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 294

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 159/299 (53%), Gaps = 14/299 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               + KG   T   +KE + + +   ++D  + EE+   LI SDI   + ++I+  L  
Sbjct: 1   MFSFIKKGLDKTLGAIKEILPEKV--EKIDKTLLEEI---LIESDIPYELVEEIIYYLP- 54

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
                  S      DV  ++      + +    D   +P V LV+GVNG GKTT I KL+
Sbjct: 55  ------PSQTVARADVKRVLQSYF--MYENTQKDTPTKPFVELVIGVNGAGKTTTIAKLA 106

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                     +L A DTFR+AAI+QLK WA++     V +  G D +A+AY+    A AK
Sbjct: 107 HIYKKENQSTLLGAADTFRAAAIEQLKSWAEKIDVGIVYTAQGHDPSAVAYDTISSALAK 166

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K+D +IIDTAGRLHN   L   + K++R+  +    APH  + +LD T G +A+ Q + F
Sbjct: 167 KIDHVIIDTAGRLHNQVNLSNELKKIVRICDKALLGAPHRKILILDGTQGSSAINQAKAF 226

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           H +    G+I+TK+DGTA+GG L  I    ++P+ ++GVGEG +DL  F   D+   I 
Sbjct: 227 HEMISIDGIIITKLDGTAKGGSLFGIAKALQLPILYVGVGEGRDDLIAFNPTDYIDTIL 285


>gi|15605555|ref|NP_220341.1| cell division protein FtsY [Chlamydia trachomatis D/UW-3/CX]
 gi|76789565|ref|YP_328651.1| hypothetical protein CTA_0894 [Chlamydia trachomatis A/HAR-13]
 gi|237803252|ref|YP_002888446.1| Cell Division Protein [Chlamydia trachomatis B/Jali20/OT]
 gi|255311660|ref|ZP_05354230.1| Cell Division Protein [Chlamydia trachomatis 6276]
 gi|255317961|ref|ZP_05359207.1| Cell Division Protein [Chlamydia trachomatis 6276s]
 gi|3329289|gb|AAC68417.1| Cell Division Protein FtsY [Chlamydia trachomatis D/UW-3/CX]
 gi|76168095|gb|AAX51103.1| FtsY [Chlamydia trachomatis A/HAR-13]
 gi|231274486|emb|CAX11282.1| Cell Division Protein [Chlamydia trachomatis B/Jali20/OT]
 gi|296437306|gb|ADH19476.1| Cell Division Protein [Chlamydia trachomatis G/11222]
 gi|297748949|gb|ADI51495.1| FtsY [Chlamydia trachomatis D-EC]
 gi|297749829|gb|ADI52507.1| FtsY [Chlamydia trachomatis D-LC]
          Length = 284

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 103/286 (36%), Positives = 146/286 (51%), Gaps = 10/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
               +  +   + L   + E  E LL   D G  + +   EEL   +   +         
Sbjct: 5   FGNKLRSLF-KKTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRRCKNPDE-------RA 56

Query: 88  VSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           V ELI   L  +    P     S RP   LV+G NG GKTT + KL+        KV++ 
Sbjct: 57  VKELIRSFLSKIISKLPQREPLSVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLIV 116

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFRSA +DQ++ WA+  +  F+  + G DAAA+A++    A A+  D +IIDT+GRL
Sbjct: 117 ATDTFRSAGMDQMRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRL 176

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H ++ L+  + K+  V  +  P APH  L  +DAT G N L QV++FH      GLI TK
Sbjct: 177 HTHTNLLKELQKIATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTK 236

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           ++G+A+GG L  I    KIP  F+G GE I+D EPF    F   + 
Sbjct: 237 VEGSAKGGSLFRIADELKIPTRFVGYGETIHDFEPFAIDRFLDKLL 282


>gi|294944803|ref|XP_002784438.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
 gi|239897472|gb|EER16234.1| signal recognition particle 54 kDa protein 2 [Perkinsus marinus
           ATCC 50983]
          Length = 528

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELL----- 71
            A    ++   +  +  +  +D+ V +E    +   L+++D+ V    ++ + +      
Sbjct: 3   LADLGKQISGALRKLGKATVIDEAVLDECLKEISTALLQADVNVRYVAELRKNIKRTVDL 62

Query: 72  TKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +  A   + QRV+   V   + +ML P  +P+      +P+VI+ VG+ G GKTT   K
Sbjct: 63  EELAAPGSNKQRVIQKAVVNQLVEMLSPDKEPYK-PTKGQPNVIMFVGLQGSGKTTSCTK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            +      G +V L   DTFR+ A DQLK  A +    F  S + SD   +A E     +
Sbjct: 122 YAHYYQRKGWRVALVCADTFRAGAFDQLKQNATKVKIPFYGSYVESDPVKIAKEGVDLFK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K D++I+DT+GR    + L   + ++   +       P+ ++ V+D+  GQ    Q +
Sbjct: 182 KDKYDIIIVDTSGRHRQEAALFDEMTQVAHAVN------PNDIVFVMDSHIGQACFEQAK 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +++TK+DG A+GGG +  V     P+ F+G GE  ++ EPF A+ F   +
Sbjct: 236 AFKDTVSVGSVVVTKLDGHAKGGGALSAVAATDSPIIFIGTGEHFDEFEPFDAQSFVQRL 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGLGD 300


>gi|71651473|ref|XP_814414.1| signal recognition particle [Trypanosoma cruzi strain CL Brener]
 gi|70879383|gb|EAN92563.1| signal recognition particle, putative [Trypanosoma cruzi]
          Length = 487

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 147/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKR-- 74
            A    K+   I+ + S   L +D V+E L +    L+++D+ V   +++ + +  +   
Sbjct: 3   LAELGQKIGGAISKMSSKPLLGEDDVKEFLNEVARALLQADVHVTTVKELQQTIRAEVAI 62

Query: 75  --YAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +++L   V   + K+L P  KPF      + ++++ VG+ G GKTT   K 
Sbjct: 63  TSEAVGLNKRKMLQTAVFSGLRKILDPGVKPF-IPAKGKTNIVMFVGLQGSGKTTSCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      GLK  L   DTFR+ A DQL+  A +    F  S   +D   +A E   + + 
Sbjct: 122 AAYFQRKGLKTALVCADTFRAGAYDQLRQNATKAKIRFYGSLTEADPVIIAKEGVAELEK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++IIDT+GR    S L   + ++   +K      P+ ++ V+ AT GQ    Q   
Sbjct: 182 EKYDLIIIDTSGRHKQESALFEEMKQVQEAVK------PNDIVFVMSATDGQGIREQARQ 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE   D E F  + F + + 
Sbjct: 236 FKEKVPVGSVIITKLDGHAKGGGALAAVAMTKSPIVFIGTGEHFEDFELFQPESFVSRML 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GMGDM 300


>gi|195952989|ref|YP_002121279.1| signal recognition particle-docking protein FtsY [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195932601|gb|ACG57301.1| signal recognition particle-docking protein FtsY [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 463

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 173/311 (55%), Gaps = 7/311 (2%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V     S   K++K    T   +   +  I  +R++D+ + EELE+ LIR+DI V +   
Sbjct: 154 VDIPKESLFEKISKTLKKTKDTIL--LNTIFINRKIDEELFEELEEKLIRADINVKLVLN 211

Query: 66  IVEELLTKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVN 120
           IVE L  +   +++    Q       EL+  +    +K   ++      +P VIL +GVN
Sbjct: 212 IVENLKKEAIKRNLQTAEQLKPLLKEELLSIIRNCGNKDLFFELLNEKEKPFVILFLGVN 271

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT IGKL+        KV+L A DTFR+AAI+QL++WA R   D V  + G+D A+
Sbjct: 272 GSGKTTTIGKLASIYKAQNKKVLLGAADTFRAAAIEQLEVWAQRAQVDIVKKQEGADPAS 331

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A+EA K+   +  DV+IIDTAGRLH    L+  + K+ + +++    AP   L V+D+T
Sbjct: 332 VAFEATKKGLEEDYDVVIIDTAGRLHTKEPLINELRKIKKSIQKAYEKAPQKALLVIDST 391

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQN++ Q ++F       GL++TK+DGT++GG +I I     +P+Y    GE + DL+P
Sbjct: 392 IGQNSISQAKIFKEAVDINGLVITKLDGTSKGGSVISICKDLALPIYMTADGERMEDLDP 451

Query: 301 FVAKDFSAVIT 311
           F  + F   + 
Sbjct: 452 FDPETFVDALL 462


>gi|118443376|ref|YP_878288.1| signal recognition particle-docking protein FtsY [Clostridium novyi
           NT]
 gi|118133832|gb|ABK60876.1| signal recognition particle-docking protein FtsY [Clostridium novyi
           NT]
          Length = 302

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 120/302 (39%), Positives = 193/302 (63%), Gaps = 5/302 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   KL  G + T     E ++++++ + ++D+ + EELE++LI +DIGV  +  ++E +
Sbjct: 4   NLFNKLKDGLSKTKNNFTEKVSEVLNLAVKIDEDLFEELEEILITADIGVDTSLDVIERV 63

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K   + ++  + +Y  + E++ ++L   +K    + +  P  +LV+GVNG GKTT IG
Sbjct: 64  RVKVKERRITDPKEVYTCLKEVLMEILNEDNKE---EENITPKTVLVIGVNGAGKTTSIG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+S ++ + G KV++AA DTFR+AAIDQL++W++R   D +  + GSD A++ ++A + A
Sbjct: 121 KMSHRLKEDGYKVLMAAADTFRAAAIDQLEVWSNRAGVDIIRHQEGSDPASVVFDAIQAA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI DTAGRLHN   LM  + K+ R++ R    +    L VLD TTGQNAL+Q 
Sbjct: 181 KARKTDVLICDTAGRLHNKKNLMNELEKINRIIDREYGESKKETLLVLDGTTGQNALQQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  V    G+++TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F A+ F   
Sbjct: 241 KQFAEVCPIDGIVITKLDGTAKGGVIIAIKHQLNIPVKFIGVGEGIDDLQEFDAESFVEA 300

Query: 310 IT 311
           + 
Sbjct: 301 LF 302


>gi|330723941|gb|AEC46311.1| signal recognition particle protein [Mycoplasma hyorhinis MCLD]
          Length = 445

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 144/306 (47%), Gaps = 20/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               S + ++    + +   L +     V  E++  L+ +D+ + + +  ++E+  K  A
Sbjct: 2   LDFLSKRFQKSFAKMNAKTTLKEEDLNEVIREIKLALLEADVNLLIVKDFIKEIKEKALA 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +++      Q+ +  V+E + ++L    KP    ++     I++VG+ G GKTT + KL
Sbjct: 62  TEITSTLNPQQQFIKIVNENLVQVLGE--KPKQIKYNRPIEKIVLVGLQGSGKTTTVAKL 119

Query: 132 SKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +          K +L   D +R AAI+QL     + +     S+  S    +       A
Sbjct: 120 AHFSLRKKHIQKPLLITADIYRPAAIEQLIQLGKQINIPVF-SQKDSTPQEIVSAGLDYA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            +   D++IIDTAGRL  +  LM  +  + ++ K      PH +  V DA +GQ+ +   
Sbjct: 179 SSNDFDLVIIDTAGRLSIDEKLMQELKDIEKIAK------PHEIFFVADALSGQDIINVA 232

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     +G I+TK+D  ARGG  + ++   KIP+ F+G GE I + + F     ++ 
Sbjct: 233 KTFNENITLSGSIITKLDSDARGGAALSLIKLLKIPIVFIGTGEKITNFDLFYPDRMASR 292

Query: 310 ITGCLD 315
           I G  D
Sbjct: 293 ILGMGD 298


>gi|289768856|ref|ZP_06528234.1| signal recognition particle receptor FtsY [Streptomyces lividans
           TK24]
 gi|289699055|gb|EFD66484.1| signal recognition particle receptor FtsY [Streptomyces lividans
           TK24]
          Length = 412

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 176/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LDD   EE+ED L+ +D+GV   Q
Sbjct: 103 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 162

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNG 121
           ++VE L  +           L   + E +  ++ P    +      + +P +++VVGVNG
Sbjct: 163 ELVERLRERVKVLGTRTPEELRTLLREELITLVGPDMDREVKTEPATSKPGIVMVVGVNG 222

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 223 TGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDPASV 282

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+ +    DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 283 AFDAVKEGKEMGSDVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAP--LDEVLLVLDATT 340

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF
Sbjct: 341 GQNGLIQARVFAEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADDLAPF 400

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 401 EPAAFVDALIG 411


>gi|114777431|ref|ZP_01452428.1| Signal recognition particle GTPase [Mariprofundus ferrooxydans
           PV-1]
 gi|114552213|gb|EAU54715.1| Signal recognition particle GTPase [Mariprofundus ferrooxydans
           PV-1]
          Length = 451

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 147/308 (47%), Gaps = 17/308 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              +L++     + KL+      IS   LDD +RE +   L+ +D+ + V + ++ E+  
Sbjct: 1   MFNRLSEKLGDIAHKLRGSAR--ISESDLDDTLRE-MRLALLEADVALPVVRHLMSEVRE 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +    +V       Q ++  + +++  +L    +  + D S  P V+L+ G+ G GKTT 
Sbjct: 58  QALGAEVARSLQPGQVIIKILHDVLADVLGGQRR--DLDLSKIPSVVLLCGLQGAGKTTT 115

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+K ++  G KV L + D  R AA +QL++ A +    ++     + AA  A  A  
Sbjct: 116 AGKLAKLLASQGKKVALTSVDATRPAAREQLQVLASQVDVPYIEGAGATAAAM-AASAVN 174

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A      VLI+DTAGR   +  LM        + +  +       L VLDA TGQ AL 
Sbjct: 175 EAGRSGYHVLILDTAGRQVVDDALMEE------IREVAEQVRASERLLVLDAMTGQTALS 228

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             E FHA    TG I+TK D   RGG  + +  +  +PV ++G GE I+  E F     +
Sbjct: 229 IAEQFHAAVTMTGCILTKTDADVRGGAALSVARSTGVPVRYIGTGEKIDAFEAFDPDRMA 288

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 289 GRILGQGD 296


>gi|157738182|ref|YP_001490866.1| signal recognition particle protein [Arcobacter butzleri RM4018]
 gi|157700036|gb|ABV68196.1| signal recognition particle protein [Arcobacter butzleri RM4018]
          Length = 450

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 137/296 (46%), Gaps = 12/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDGVRE------ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             +   I + ++  R  D +        EL+  L+++D+     ++++  +  +     +
Sbjct: 3   DSITGSIRNAVNKIRYQDDITALNKATAELKKALLKADVHHKTTKELITAVELQTKTAGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
                L  +   + ++L           S  P  IL+ G+ G GKTT  GKL+  +    
Sbjct: 63  GQDSFLKALKSELTRLLTANGNQGFVFASTPPTTILMTGLQGSGKTTTTGKLANYLKIRK 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV++AA D  R AA++QLK  A +   D    +   +   +A +A ++A  +  DV +I
Sbjct: 123 KKVLVAACDLQRLAAVEQLKQIAAQIEVDIYFDDNEKNPVKIALKAKEKAIKEHYDVFLI 182

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL  +  LM  +  +   +       P+ +  V D+ TG +A +    F    G  
Sbjct: 183 DTAGRLAIDEELMKQLKDIKDAIN------PNEIFYVADSLTGHDATKTAITFKEKIGID 236

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G+I++K DG  +GG  + I    ++P+ F+G+GE + DLE F+     + + G  D
Sbjct: 237 GVILSKYDGDTKGGVALSIANQVEVPLRFIGIGEKMPDLEVFIPDRIVSRLLGLGD 292


>gi|111225154|ref|YP_715948.1| cell division protein FtsY [Frankia alni ACN14a]
 gi|111152686|emb|CAJ64427.1| Cell division protein FtsY [Frankia alni ACN14a]
          Length = 422

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 105/275 (38%), Positives = 153/275 (55%), Gaps = 4/275 (1%)

Query: 40  RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT--KRYAKDVSVQRVLYDVSELIHKMLM 97
            LD+   E++E  L+ +D+GV    ++V  L    K        Q       EL+ ++  
Sbjct: 147 NLDEETWEDVEATLLLADVGVVATGELVAALRERTKVLGASTPAQARAMLRDELLAQVGT 206

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              +        RP V+LVVGVNG GKTT  GK+++ +   G  V+L A DTFR+AA DQ
Sbjct: 207 ATDRSLRTSVPDRPAVVLVVGVNGTGKTTTCGKVARLLVAEGRTVVLGAADTFRAAAADQ 266

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+ W +R  A  V    G D A++A++A K+      D ++IDTAGRLH  + LM  + K
Sbjct: 267 LQTWGERVGAVTVRGAEGGDPASVAFDAVKRGIDSAADTVLIDTAGRLHTKTGLMDELAK 326

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RV+ +  P     VL VLDATTGQNAL Q  +F      +G+++TK+DGTA+GG +I 
Sbjct: 327 IKRVVGKHGP--VDEVLLVLDATTGQNALVQARVFTEAVELSGVVLTKLDGTAKGGIVIA 384

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 385 VQRELGVPVKLIGLGEGPDDLAPFEPEAFVDALLG 419


>gi|21223936|ref|NP_629715.1| docking protein [Streptomyces coelicolor A3(2)]
 gi|4007739|emb|CAA22423.1| putative prokaryotic docking protein [Streptomyces coelicolor
           A3(2)]
 gi|23345105|gb|AAN17782.1| signal recognition particle receptor FtsY [Streptomyces lividans]
          Length = 412

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 176/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LDD   EE+ED L+ +D+GV   Q
Sbjct: 103 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 162

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNG 121
           ++VE L  +           L   + E +  ++ P    +      + +P +++VVGVNG
Sbjct: 163 ELVERLRERVKVLGTRTPEELRTLLREELITLVGPDMDREVKTEPATSKPGIVMVVGVNG 222

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 223 TGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDPASV 282

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+ +    DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 283 AFDAVKEGKEMGSDVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAP--LDEVLLVLDATT 340

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF
Sbjct: 341 GQNGLIQARVFAEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADDLAPF 400

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 401 EPAAFVDALIG 411


>gi|224532367|ref|ZP_03672997.1| signal recognition particle protein [Borrelia burgdorferi WI91-23]
 gi|225549895|ref|ZP_03770856.1| signal recognition particle protein [Borrelia burgdorferi 118a]
 gi|224512674|gb|EEF83045.1| signal recognition particle protein [Borrelia burgdorferi WI91-23]
 gi|225369354|gb|EEG98806.1| signal recognition particle protein [Borrelia burgdorferi 118a]
          Length = 444

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S     +  I  +     ++D       E +++ L+ +D+ + V ++ +  ++ +   
Sbjct: 2   LESLGSNFRNFINYLSGKSTINDKNIAEAIEIIKNSLVDADVNLRVIRRFLNSIIEESKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V        + +  V++ + K L   +   +   +++   IL++G+ G GKTT   KL
Sbjct: 62  VKVLRGIDPKSQFIKIVNDNLVKFLGGKNYELSLHPANKQSYILMLGLQGSGKTTTCVKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S K+     KV+L A DTFR+AA++QLKI   +        E   D   +   + K A++
Sbjct: 122 SLKLKKENRKVLLVAADTFRAAAVEQLKILGGQVGVPVFSIEGEKDPIKIVKASMKFAES 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DT GRL   S+L+  I K+  +L       P   + V+D+  GQ A+   + 
Sbjct: 182 NFFDSVIVDTRGRLEIESLLVEEIKKIKGIL------RPAETILVVDSMMGQVAVNIAKE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I +K D   RGG ++       +P+ F+GVGE I DL+ F  +  ++ I 
Sbjct: 236 FNENVGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKFIGVGEKIEDLDSFYPERIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|60623873|ref|NP_377324.2| signal recognition particle receptor protein [Sulfolobus tokodaii
           str. 7]
          Length = 378

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 86/299 (28%), Positives = 154/299 (51%), Gaps = 15/299 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
             +     + I            + EEL   L+ SD+   V +KI+++L      K V+ 
Sbjct: 84  KKSRFSFFDFIKYKTIKEEDIQDILEELRYQLLESDVSYEVTEKILDDLKNAIIGKKVTR 143

Query: 82  QRVLYDV-----SELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              L ++      + I ++L    +          + +P+VI+  GVNGVGKTT I K++
Sbjct: 144 SEDLEELVTNSLKKSIEEILTKNQRIDLIEEIRKRNKKPYVIVFFGVNGVGKTTTIAKVA 203

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             +    +  +++A DTFR+AA +QL   A +     V  + G+D A++A++A   A+++
Sbjct: 204 YLLKKNKISCIISASDTFRAAAQEQLAYHASKLEIPIVKGKYGADPASVAFDAINSAKSR 263

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +DV++IDTAGR+H +  L++ + +++++ K      P   + VLD+  G +AL Q + F
Sbjct: 264 NIDVVLIDTAGRMHIDEDLVSELKRIVKIAK------PDLRILVLDSLAGNDALEQAKYF 317

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
               G   +I+TK+D  A+GG ++ +      PV +LGVG+  + L PF A+ F   + 
Sbjct: 318 ENNVGYDAVILTKVDADAKGGVILSLAYELNKPVIYLGVGQDYDSLIPFDAEWFIKRLF 376


>gi|116754856|ref|YP_843974.1| signal recognition particle-docking protein FtsY [Methanosaeta
           thermophila PT]
 gi|116666307|gb|ABK15334.1| signal recognition particle-docking protein FtsY [Methanosaeta
           thermophila PT]
          Length = 379

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 100/299 (33%), Positives = 152/299 (50%), Gaps = 19/299 (6%)

Query: 27  KLKEGITDIISSRR--LDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
            L +    +I  R   +D+   EE    LE  L+ SD+ + VA++IV  + +        
Sbjct: 86  SLVDKAKSLILEREVIIDERDLEEPLWGLEMALLESDVALPVAEEIVSSVKSSLVGSKKK 145

Query: 81  VQRVLYDVSE-LIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSK 133
           +     D+ E  +   L+ +     +DF        +P  IL VGVNG GKTT I K+++
Sbjct: 146 IGSDTGDLVESALRAALLKVLSKNVFDFDEFIKNTPKPVKILFVGVNGTGKTTSIAKVAR 205

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            + + G  V+LAAGDTFR+ AI+QL+    R     +  + G D AA+ ++A + A+A K
Sbjct: 206 YLKERGYSVVLAAGDTFRAGAIEQLETHGQRLDLKVIKHKTGGDPAAVIFDAIEYAKAHK 265

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DV++ DTAGRLH N  LM  + K++RV K      P  ++ V +A  G +A+ +  +F+
Sbjct: 266 KDVVLADTAGRLHTNINLMDQMKKIVRVTK------PDMLIFVDEAIAGNDAVERARLFN 319

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                TG I+TK D  A+GG  I I      P+ FLGVG+   DL  F        + G
Sbjct: 320 ESVPITGTILTKTDADAKGGSAISIAHVTGKPIIFLGVGQDYPDLVKFDPVWLVDRLLG 378


>gi|126434523|ref|YP_001070214.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           JLS]
 gi|126234323|gb|ABN97723.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           JLS]
          Length = 458

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 114/306 (37%), Positives = 173/306 (56%), Gaps = 9/306 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             + +L    A +   L   +  ++    LD+   EE+ED L+ +D+G  V + +V  L 
Sbjct: 157 GRLDRLRGRLAKSQNALGRSMLGLLGGGDLDEESWEEIEDTLLIADLGPVVTESVVAALR 216

Query: 72  TK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTT 126
           T+        +   + VL DV  LI ++   + +       + +P V+LVVGVNG GKTT
Sbjct: 217 TRMASDAVRTEADARAVLRDV--LISELHPEMDRSIRALPHADKPSVLLVVGVNGTGKTT 274

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A+ V    G+D A++A++A 
Sbjct: 275 TVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWASRVGAEVVRGPEGADPASVAFDAV 334

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +      DV+ IDTAGRLH  + LM  +GK+ RV+++    A   VL VLDAT GQN+L
Sbjct: 335 SKGIENGADVVAIDTAGRLHTKTGLMDELGKVKRVVEKR--AAVDEVLLVLDATIGQNSL 392

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    F
Sbjct: 393 PQARVFAEVVKITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPGAF 452

Query: 307 SAVITG 312
              + G
Sbjct: 453 VDALLG 458


>gi|51598948|ref|YP_073136.1| signal recognition particle protein [Borrelia garinii PBi]
 gi|51573519|gb|AAU07544.1| signal recognition particle protein [Borrelia garinii PBi]
          Length = 444

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 143/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S     K  I  +     ++D       E +++ L+ +D+ + V ++ +  ++ +   
Sbjct: 2   LESLGSNFKNFINYLSGKSTINDKNISEAIEIIKNSLVDADVNLRVIRRFLNSIIEESKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V        + +  V++ + K L   S        ++   IL++G+ G GKTT   KL
Sbjct: 62  VKVLRGVDPKSQFIKIVNDNLVKFLGGKSYELGLHPVNKQSYILMLGLQGSGKTTTCAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S K+     KV+L A DTFR+AAI+QLKI   +            D   +   + K A++
Sbjct: 122 SLKLKKENRKVLLVAADTFRAAAIEQLKILGSQIGVPVFSLTGEKDPIKIVKASIKFAES 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D +I+DT GRL   S+L+  I K+  +LK      P   + V+D+  GQ A+   + 
Sbjct: 182 EFFDSVIVDTRGRLEVESLLVEEIKKIKDILK------PTETILVVDSMMGQVAVNIAKE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I +K D   RGG ++       +P+ F+GVGE + DL+ F  +  ++ I 
Sbjct: 236 FNENVGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKFIGVGERVEDLDSFYPERIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|325996419|gb|ADZ51824.1| Signal recognition particle, subunit Ffh SRP54 [Helicobacter pylori
           2018]
          Length = 448

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLSGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLRGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVF-HEENKSVKEIANNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  VL       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKEVLN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|156059506|ref|XP_001595676.1| hypothetical protein SS1G_03765 [Sclerotinia sclerotiorum 1980]
 gi|154701552|gb|EDO01291.1| hypothetical protein SS1G_03765 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 528

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 87/295 (29%), Positives = 139/295 (47%), Gaps = 16/295 (5%)

Query: 31  GITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
            I  +  S  LD    DG+ +E+   L+ +D+ V +   + + +      K+++      
Sbjct: 14  SIRILQGSSNLDEKAFDGMIKEICSALLEADVNVRLVGNLRKSIKASVNFKELAPAVNKK 73

Query: 87  DVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
            V +      + K++ P ++PF      + +VI+ VG+ G GKTT   KL++     G K
Sbjct: 74  KVIQKAVYDELVKLVDPHAEPFKPK-KGKANVIMFVGLQGAGKTTTCTKLARWYQSRGFK 132

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
             L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + +K +++I+DT
Sbjct: 133 ACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAKEGVDKFKKEKFEIIIVDT 192

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           +GR      L   +  +   +K      P   + VLDA+ GQ A  Q + F   A    +
Sbjct: 193 SGRHRQEDALFQEMVDIQTAVK------PDQTVMVLDASIGQQAEAQSKAFKETADFGAI 246

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           I+TK DG A GGG I  V     P+ F+G GE + DLE F    F + + G  D 
Sbjct: 247 IITKTDGHASGGGAISAVAATHTPIVFIGTGEHMLDLEKFAPTQFVSKLLGMGDM 301


>gi|208435047|ref|YP_002266713.1| signal recognition particle protein [Helicobacter pylori G27]
 gi|208432976|gb|ACI27847.1| signal recognition particle protein [Helicobacter pylori G27]
          Length = 448

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLSGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVL++
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIASNALKRAKEAQFDVLLV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKGILN------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291


>gi|254458732|ref|ZP_05072156.1| signal recognition particle protein [Campylobacterales bacterium GD
           1]
 gi|207084498|gb|EDZ61786.1| signal recognition particle protein [Campylobacterales bacterium GD
           1]
          Length = 448

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 140/300 (46%), Gaps = 14/300 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + +      I  I   R  DD        +EL+  L+++D+   V ++++ E+  +  
Sbjct: 2   FDTLTDSFTAAIKKI---RFHDDDKALTKALDELKKSLLKADVNHKVVKELIAEVQIETK 58

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              +   + L  +   ++K+L            + P VIL+ G+ G GKTT  GKL+  +
Sbjct: 59  KNGIGKDQFLDALRAALYKLLEIGGNKGFTFVPNPPTVILMTGLQGSGKTTTTGKLANYL 118

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
            +   KV++ A D  R AA++QL+    +   +   +E   +   +   A K+A     D
Sbjct: 119 KNKQKKVLIVAADLQRLAAVEQLRQITTQIGVELYENEATKNPVEVVAAALKKANDGIYD 178

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V++IDTAGRL  +  LM  +  + +         P  +  V D+ TGQ+A++    F   
Sbjct: 179 VVLIDTAGRLAIDDELMNELEAVKKAAN------PSEIFYVADSMTGQDAVKTATSFKEK 232

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+I++K DG ++GG  + +     +P+ F+G GE + DLE F+       + G  D
Sbjct: 233 IGIDGVILSKYDGDSKGGVALGLASQVLVPLRFIGSGEKMEDLEVFLPDRIVNRLMGFGD 292


>gi|57242523|ref|ZP_00370461.1| signal recognition particle-docking protein FtsY [Campylobacter
           upsaliensis RM3195]
 gi|57016808|gb|EAL53591.1| signal recognition particle-docking protein FtsY [Campylobacter
           upsaliensis RM3195]
          Length = 288

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 99/296 (33%), Positives = 160/296 (54%), Gaps = 23/296 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-----LTKRY 75
           F  T  K  E IT   ++ ++   + EE+   L+ +D+   + ++I+  L     + K  
Sbjct: 5   FKKTLAKTLENITKTKANHKISKDLLEEI---LLEADVAYEIVEEIIYYLPPTDEVKKAD 61

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            K V     LY+  E                 + +P V L++GVNG GKTT I KL+   
Sbjct: 62  LKRVMGAYFLYENPE---------------SSTQKPFVELILGVNGAGKTTSIAKLANLY 106

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV+L A DTFR+ AI+QL++WA++     V S  G D +A+A++   +A+AK  D
Sbjct: 107 KKQGQKVILGACDTFRAGAIEQLRLWAEKIGVQIVLSNQGHDPSAVAFDTISKAKAKDFD 166

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
            +I+DTAGRL N   L   + K++R+ ++   +APH  + VLD T G   + Q + F+ +
Sbjct: 167 RVILDTAGRLQNQKNLANELEKIVRICEKAMTNAPHRKILVLDGTQGNAGILQAKAFNEL 226

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
               G+I+TK+DGTA+GG L  I    ++P++++GVGE ++DL  F A  +   + 
Sbjct: 227 IKLDGVIITKLDGTAKGGALFSIARELEMPIFYVGVGEKMDDLYEFDANAYLDTLL 282


>gi|67469473|ref|XP_650715.1| signal recognition particle protein SRP54 [Entamoeba histolytica
           HM-1:IMSS]
 gi|56467365|gb|EAL45328.1| signal recognition particle protein SRP54, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 487

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 145/304 (47%), Gaps = 14/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            +     L   +  + SS  +D+ V     +E+E  L+  D+     +++V  +  K  +
Sbjct: 3   LSQLGSSLVTALRKMTSSTVVDEEVINTLLKEIETSLLGEDVNPIFIRQMVNNIKKKINS 62

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLS 132
           +D+        +  + + + L+ L  P    F  +     V+++VG+ G GKTT I KL+
Sbjct: 63  EDIPDGIDKRKLIKDSVFEELINLVDPKTEAFKPKKGKTCVLMMVGLQGAGKTTTITKLA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
               + G K  +   DTFR+ A +QL++ A R    F   +  SD   +A E  +  + +
Sbjct: 123 LYYKNRGYKPAVVGADTFRAGAYEQLQMNAKRAGVPFFGIKEESDPVKVASEGVRTFRKE 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D++++DT+GR   +  L   +  +   +K      P S++ V+D   GQ A  Q + F
Sbjct: 183 KNDIILVDTSGRHKQDKELFKEMQSVRDAIK------PDSIIFVMDGAIGQAAFGQAKAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                   +I+TK+DG + GGG +  V   K P+ F+G GE +N++E F A+ F   + G
Sbjct: 237 KDAVEVGSVIITKLDGHSNGGGALSAVAATKSPIIFIGTGEKVNEIEEFDAESFVRKLLG 296

Query: 313 CLDY 316
             D 
Sbjct: 297 MGDL 300


>gi|108798923|ref|YP_639120.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           MCS]
 gi|119868038|ref|YP_937990.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           KMS]
 gi|108769342|gb|ABG08064.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           MCS]
 gi|119694127|gb|ABL91200.1| signal recognition particle-docking protein FtsY [Mycobacterium sp.
           KMS]
          Length = 466

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 114/306 (37%), Positives = 173/306 (56%), Gaps = 9/306 (2%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             + +L    A +   L   +  ++    LD+   EE+ED L+ +D+G  V + +V  L 
Sbjct: 165 GRLDRLRGRLAKSQNALGRSMLGLLGGGDLDEESWEEIEDTLLIADLGPVVTESVVAALR 224

Query: 72  TK----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTT 126
           T+        +   + VL DV  LI ++   + +       + +P V+LVVGVNG GKTT
Sbjct: 225 TRMASDAVRTEADARAVLRDV--LISELHPEMDRSIRALPHADKPSVLLVVGVNGTGKTT 282

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A+ V    G+D A++A++A 
Sbjct: 283 TVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWASRVGAEVVRGPEGADPASVAFDAV 342

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +      DV+ IDTAGRLH  + LM  +GK+ RV+++    A   VL VLDAT GQN+L
Sbjct: 343 SKGIENGADVVAIDTAGRLHTKTGLMDELGKVKRVVEKR--AAVDEVLLVLDATIGQNSL 400

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    F
Sbjct: 401 PQARVFAEVVKITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPGAF 460

Query: 307 SAVITG 312
              + G
Sbjct: 461 VDALLG 466


>gi|237750758|ref|ZP_04581238.1| signal recognition particle protein [Helicobacter bilis ATCC 43879]
 gi|229373848|gb|EEO24239.1| signal recognition particle protein [Helicobacter bilis ATCC 43879]
          Length = 443

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 144/299 (48%), Gaps = 11/299 (3%)

Query: 21  FASTSLKLKEGITDII---SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           F + S   +  I  I      + LD    +EL+  L+++D+     ++I+++   K  A 
Sbjct: 2   FETLSNGFRGAINKIRFSDDEKALDKA-LDELKKALLKNDVYHKTTKEILQKTKDKTKAN 60

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
            +     L  +S+ + ++L              P  IL+ G+ G GKTT   KL+  +  
Sbjct: 61  GIGRDSFLNALSQSLLEILEVSGVYGFTYAQKPPTNILMSGLQGSGKTTTCAKLANYLKA 120

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV+L   D  R AA+ QLK   ++   +   SE  +   ++A EA K AQ    DV+
Sbjct: 121 RNKKVLLVPCDLQRLAAVTQLKTLGEQIETEVFHSE-SNSPVSVAKEAMKYAQDGLFDVV 179

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           I DTAGRL  +  LM+ + ++ + +       PH    V D+ +GQ+ +R  + FH   G
Sbjct: 180 IYDTAGRLAIDESLMSELAEIKKAIN------PHDTFYVADSLSGQDGVRTAQTFHEKIG 233

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
            +G+I++K D  ++GG  + I     IP+ F+G+GE I DL+ F+     + + G  D 
Sbjct: 234 ISGVILSKFDSDSKGGIALSIAYQIGIPLRFMGMGEKIADLDLFMPDRIVSRLMGAGDL 292


>gi|323466307|gb|ADX69994.1| Cell division protein [Lactobacillus helveticus H10]
          Length = 272

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 101/264 (38%), Positives = 155/264 (58%), Gaps = 5/264 (1%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPF 103
           +EDLLI SD+G   A+++++EL  +   ++   +  L  V      +L  K      +  
Sbjct: 1   MEDLLIESDVGYETAEQLIDELREEAKLQNAKSRDDLKKVIVEKLVDLYDKDGNSEDEKL 60

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
            +    +P+V L VGVNG GKTT IGKL+K+  D G  V++AA DTFR+ A++QL  W  
Sbjct: 61  IYHPEDKPNVYLFVGVNGAGKTTTIGKLAKRFKDEGKSVIMAAADTFRAGAVEQLVEWGK 120

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           R     V  +  +D A++ Y+A ++A  +  D L++DTAGRL N   LMA + K+ R++K
Sbjct: 121 RVDVPVVTGKEKADPASVVYDATERAIKENADYLLVDTAGRLQNKKNLMAELEKIQRIIK 180

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           +L P  P   L VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     
Sbjct: 181 KLLPDQPTETLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMN 240

Query: 284 IPVYFLGVGEGINDLEPFVAKDFS 307
           +PV  +G+GE   DL  F A +++
Sbjct: 241 LPVKLVGLGEKAEDLADFDAANYA 264


>gi|58267554|ref|XP_570933.1| Signal recognition particle 54 kDa protein [Cryptococcus neoformans
           var. neoformans JEC21]
 gi|134112227|ref|XP_775089.1| hypothetical protein CNBE3630 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257741|gb|EAL20442.1| hypothetical protein CNBE3630 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227167|gb|AAW43626.1| Signal recognition particle 54 kDa protein, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 591

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 93/311 (29%), Positives = 146/311 (46%), Gaps = 22/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVE-------- 68
            A    +L      +  +  +DD    GV +EL   L+ SD+ V +   +          
Sbjct: 3   LADLGTRLHGAWNQLSKASVIDDKVIDGVLKELCAALLESDVNVKLVASLRTKVKTKVKK 62

Query: 69  --ELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
             E   K   ++ + + V+   V + +  ++ P ++P+      + +V++ VG+ G GKT
Sbjct: 63  SLEESEKAGGREANKKNVVQKAVFDELVALVDPGTEPYK-PVKGKTNVLMAVGIQGAGKT 121

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T   KL+      G +  L   DTFR+ A DQLK  A +    F  S   +D  A+A   
Sbjct: 122 TTCTKLAVHYQRRGFRTCLVCADTFRAGAFDQLKQNATKAKIPFYGSYTETDPVAIASLG 181

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++ + ++ DV+I+DT+GR    S L   +  +   +K      P   L VLDA+ GQ A
Sbjct: 182 VEKFRKERFDVIIVDTSGRHKQESELFEEMVAIGAAVK------PDMTLMVLDASIGQAA 235

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
             Q   F   A    +I+TK+DG A+GGG I  V   K P+ FLG GE +NDLE F  + 
Sbjct: 236 EGQSRAFKDSADFGAIIVTKLDGHAKGGGAISAVAATKTPIIFLGTGEHLNDLERFAPQP 295

Query: 306 FSAVITGCLDY 316
           F + + G  D 
Sbjct: 296 FISKLLGMGDM 306


>gi|303242099|ref|ZP_07328590.1| signal recognition particle-docking protein FtsY [Acetivibrio
           cellulolyticus CD2]
 gi|302590393|gb|EFL60150.1| signal recognition particle-docking protein FtsY [Acetivibrio
           cellulolyticus CD2]
          Length = 302

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 194/303 (64%), Gaps = 4/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + +  KL +G   T   + E I  ++ S  ++D+ + EELE++LI SD+G   + +I+E+
Sbjct: 1   MGFFDKLKEGLKKTKNVITERIDQVLVSFGKIDEELFEELEEVLITSDVGAETSLRIIED 60

Query: 70  LLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  K     V+    +   + E + ++L   S   N   +  P VI+VVGVNGVGKTT I
Sbjct: 61  IKKKVKDNKVTDPLKVKGLLKEELSEILSKESTELNIKTT--PSVIVVVGVNGVGKTTSI 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK++ ++  +G KV++AAGDTFR+AAIDQL+IWADR   D +    G+D AA+ Y+A + 
Sbjct: 119 GKIANQLKQSGKKVVMAAGDTFRAAAIDQLEIWADRVGVDLIKHAEGADPAAVIYDAVQS 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+K DVLI DTAGRLH    LM  + K+ R+++R  P+A   VL VLDATTGQNA+ Q
Sbjct: 179 VKARKADVLICDTAGRLHTKKNLMDELKKVFRIIERELPNASMEVLLVLDATTGQNAIVQ 238

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F  V+  +G+++TK+DGTA+GG +I +    KIPV  +GVGE ++DL+ F +++F  
Sbjct: 239 AKTFAEVSPVSGIVLTKLDGTAKGGIVIAVSSELKIPVKLIGVGEQMDDLQRFNSEEFVE 298

Query: 309 VIT 311
            + 
Sbjct: 299 ALF 301


>gi|255349224|ref|ZP_05381231.1| Cell Division Protein [Chlamydia trachomatis 70]
 gi|255503761|ref|ZP_05382151.1| Cell Division Protein [Chlamydia trachomatis 70s]
          Length = 284

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 103/286 (36%), Positives = 145/286 (50%), Gaps = 10/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
               +  +   + L   + E  E LL   D G  + +   EEL   +   +         
Sbjct: 5   FGNKLRSLF-KKTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRRCKNPDE-------RV 56

Query: 88  VSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           V ELI   L  +    P     S RP   LV+G NG GKTT + KL+        KV+  
Sbjct: 57  VKELIRSFLSKIIAKLPQREPLSVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLTV 116

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFRSA +DQ++ WA+  +  F+  + G DAAA+A++    A A+  D +IIDT+GRL
Sbjct: 117 ATDTFRSAGMDQMRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTSGRL 176

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H ++ L+  + K+  V  +  P APH  L  +DAT G N L QV++FH      GLI TK
Sbjct: 177 HTHTNLLKELQKIATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTK 236

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           ++G+A+GG L  I    KIP  F+G GE I+D EPF    F   + 
Sbjct: 237 VEGSAKGGSLFRIADELKIPTRFVGYGETIHDFEPFAIDRFLDKLL 282


>gi|251772981|gb|EES53538.1| signal recognition particle protein [Leptospirillum
           ferrodiazotrophum]
          Length = 444

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + +L+     +     L +       EE+   L+ +D+ + V +   E L  +   
Sbjct: 2   FESLTGRLEGIFKKLTGRGGLTEQLVGETLEEIRVALLEADVSLDVVKSFTEGLSARLVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +         Q+V+ +V + +  +L           S  P +I ++G+ G GKTT   KL
Sbjct: 62  QAQKSGLTGAQQVIAEVYQEMVHILGDHRATIAL-ASKPPTIIFMMGLQGSGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQ 190
           +        +V+L A D  R AAIDQLK+  ++     +   +  +  + L     ++  
Sbjct: 121 ALHFKGQNRRVLLVASDLARLAAIDQLKVLGEQIGVPVLLPPDGTTRPSDLYPLVKRRVI 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +V+I+DTAGRL  +S LM  + ++ R+      ++P   L V+DA  GQ A+   +
Sbjct: 181 EGMYEVVIVDTAGRLTVDSALMGELKELRRL------YSPKECLLVVDAMQGQEAVGVAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A  G  G++ TK+DG  RGG ++ I    K P+ F+G+GE ++ LE F     ++ I
Sbjct: 235 TFDAEIGVDGVVFTKLDGDTRGGAVLSIRQVLKKPIKFVGMGEKLDRLEAFFPDRMASRI 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 IGMGD 299


>gi|226328731|ref|ZP_03804249.1| hypothetical protein PROPEN_02626 [Proteus penneri ATCC 35198]
 gi|225201917|gb|EEG84271.1| hypothetical protein PROPEN_02626 [Proteus penneri ATCC 35198]
          Length = 281

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 17/284 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FENLSDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFIARVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   +   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVQNELVNAMGEVNTDLDLS-AQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +   K +L  + D +R AAI QL+  A+    DF  S +  +   +A  A K AQ
Sbjct: 121 GKFLKEKKKKKVLVVSADVYRPAAIKQLETLAETVGIDFFPSTVQENPVTIASNALKHAQ 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVL++DTAGRLH +  +M  I  + + +       P   L V+DA TGQ+A    +
Sbjct: 181 LQFYDVLLVDTAGRLHVDEGMMEEIQLLHKAIN------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            F+     TG+++TK+DG ARGG  + I      P+ FLGVGE 
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEK 278


>gi|319776794|ref|YP_004136445.1| cell division protein ftsy [Mycoplasma fermentans M64]
 gi|318037869|gb|ADV34068.1| Cell division protein FtsY [Mycoplasma fermentans M64]
          Length = 355

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 109/300 (36%), Positives = 176/300 (58%), Gaps = 8/300 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + K   G + +S  L + I ++ +  + +++   +ELE++LI SDI   +   I+  +  
Sbjct: 47  LDKYATGLSKSS-SLGKQIFNLQNKHKEINEEFFDELEEILIMSDINAKLVYAIITHIKN 105

Query: 73  KRYAKDVSVQRVLYDVSE----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  A+ +   + + ++      +++     +    N+    R ++ + VGVNG GKTT I
Sbjct: 106 EVRARGLKDTKDIGELVADQMFVVYTNKSIVDTTLNYQ-DGRLNIFIFVGVNGSGKTTSI 164

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFK 187
            K++ K    G KV++AAGDTFR+ A+DQL +WA+R  A  V   + G D +++ YEA +
Sbjct: 165 AKIAYKYIKEGKKVLIAAGDTFRAGAVDQLGVWAERVGAPIVKPVKEGVDPSSVVYEALE 224

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +AQ +K D+L+IDTAGRL N   LM  + KM  ++ R    APH  L VLDATTGQN + 
Sbjct: 225 KAQNEKYDLLLIDTAGRLQNKVNLMKELEKMYGIIARFQDKAPHECLLVLDATTGQNGVS 284

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F  VA  TG+I+TKMDGT++GG ++ I     + V ++G+GEG++DL+ F   +F 
Sbjct: 285 QARSFKEVAAPTGIILTKMDGTSKGGIVLSIKDEFDLNVKYIGLGEGLDDLQEFDLDNFI 344


>gi|255507442|ref|ZP_05383081.1| Cell Division Protein [Chlamydia trachomatis D(s)2923]
 gi|289525866|emb|CBJ15348.1| Cell Division Protein [Chlamydia trachomatis Sweden2]
 gi|296435451|gb|ADH17629.1| Cell Division Protein [Chlamydia trachomatis E/150]
 gi|296439168|gb|ADH21321.1| Cell Division Protein [Chlamydia trachomatis E/11023]
          Length = 284

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 103/285 (36%), Positives = 152/285 (53%), Gaps = 8/285 (2%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
               +  ++  + L   + E  E LL   D G  + +   EEL   +   + +V+ ++  
Sbjct: 5   FGNKLRSLL-KKTLSSDLLEYAEVLLYEGDFGPKLTEAFCEELRRCKNPDERAVKELIRS 63

Query: 88  -VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            +S++I K+      P     S RP   LV+G NG GKTT + KL+        KV+  A
Sbjct: 64  FLSKIIAKL------PQREPLSVRPFSTLVLGTNGSGKTTTVAKLAHYYLSQNQKVLTVA 117

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFRSA +DQ++ WA+  +  F+  + G DAAA+A++    A A+  D +IIDTAGRLH
Sbjct: 118 TDTFRSAGMDQMRCWAETLNCGFISGKPGGDAAAIAFDGISAAVARDYDHVIIDTAGRLH 177

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            ++ L+  + K+  V  +  P APH  L  +DAT G N L QV++FH      GLI TK+
Sbjct: 178 THTNLLKELQKIATVCNKAFPGAPHETLMTIDATLGSNTLSQVQLFHEAVPINGLIFTKV 237

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +G+A+GG L  I    KIP  F+G GE I+D EPF    F   + 
Sbjct: 238 EGSAKGGSLFRIADELKIPTRFVGYGETIHDFEPFAIDRFLDKLL 282


>gi|240103695|ref|YP_002960004.1| GTP-binding signal recognition particle receptor (SRP alpha, SRP54)
           (FtsY/SRP54) [Thermococcus gammatolerans EJ3]
 gi|239911249|gb|ACS34140.1| GTP-binding signal recognition particle receptor (SRP alpha, SRP54)
           (FtsY/SRP54) [Thermococcus gammatolerans EJ3]
          Length = 328

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 92/266 (34%), Positives = 142/266 (53%), Gaps = 15/266 (5%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFNWDF------ 107
           +D+ + V  ++ E +  K   K V +      V E  +   +L  L+ P   +       
Sbjct: 66  ADVALEVVDELRESIKRKLVGKKVKIGTDKAKVIEDAVKEAVLEVLTPPRKINLLEEIRA 125

Query: 108 -SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              +P+VI+ VG NG GKTT I KL+  +   GL V++AA DTFR+ AI+Q++  A R  
Sbjct: 126 KKEKPYVIVFVGFNGSGKTTTIAKLAHWLKKNGLSVVIAASDTFRAGAIEQVEEHAKRVG 185

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +    G+D AA+AY+A + A+A+ +DV+++DTAGR   N  LM  + K++RV K   
Sbjct: 186 VKVIKHSYGADPAAVAYDAIQHAKARGIDVVLVDTAGRNELNRNLMDEMKKIVRVTK--- 242

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P  V+ V D+  G + + Q   F+      G+I+TK+D  +RGG  + I      P+
Sbjct: 243 ---PDLVIFVGDSLAGNSIIDQARQFNEAVKIDGVILTKLDADSRGGAALSISHAIGAPI 299

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITG 312
            F+GVG+G  DL PF  K F  +I G
Sbjct: 300 LFVGVGQGYEDLRPFDEKWFVNLIFG 325


>gi|72383174|ref|YP_292529.1| signal recognition particle-docking protein FtsY [Prochlorococcus
           marinus str. NATL2A]
 gi|72003024|gb|AAZ58826.1| signal recognition particle-docking protein FtsY [Prochlorococcus
           marinus str. NATL2A]
          Length = 431

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 177/312 (56%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + + + + W+ +L +G   T       + + +    L   V ++LE LL+R+D GV+   
Sbjct: 117 QFSLDDIDWLSRLKQGLEKTRKGFVTDLLEKLGDDPLTPEVLDDLETLLLRADAGVSATD 176

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP----HVILVVGVN 120
           +I+E L TK   + V     L  + E +  +L    K    D         ++ ++VGVN
Sbjct: 177 QILESLRTKLNEEVVEASEGLRFLKEQLVNVLEKPIKDSGADLLSPQKGCLNIWMLVGVN 236

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+     +G   M+AA DTFR+AA+ Q+K+W DRT  + + +E  + D A
Sbjct: 237 GVGKTTTLGKLASVAKRSGFSAMIAAADTFRAAAVQQVKVWGDRTGVEVIANESKNADPA 296

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++ ++A   +++K +D+L++DTAGRL   + LM  + K+ +++ +L P A    L VLD+
Sbjct: 297 SIVFDAIGASKSKNIDLLLVDTAGRLQTKNNLMEELKKIRKIIDKLAPKANVESLLVLDS 356

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN LRQ   F   A  TG+I+TK+DG+++GG  + +    K+PV F+G GE I DL 
Sbjct: 357 SQGQNGLRQALAFADSAELTGVILTKLDGSSKGGVAMAVASEAKLPVRFIGAGEKIRDLR 416

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 417 PFNSFEFIEALL 428


>gi|305663445|ref|YP_003859733.1| GTP-binding signal recognition particle SRP54 G- domain
           [Ignisphaera aggregans DSM 17230]
 gi|304378014|gb|ADM27853.1| GTP-binding signal recognition particle SRP54 G- domain
           [Ignisphaera aggregans DSM 17230]
          Length = 453

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 136/302 (45%), Gaps = 18/302 (5%)

Query: 26  LKLKEGITDIISSRR----LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
             LK+ ++D +  +       +   +EL+  L+R+D+ V +  ++ + +  +   +    
Sbjct: 5   ENLKKIVSDFLRGKEPYEIAVENFVKELQKTLLRADVNVKLVLELTKNIRERALKERPPP 64

Query: 82  -----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
                +  +  V + +  +     KP  +     P++I++VGV G GKTT   K++    
Sbjct: 65  YISKQEWFIKIVYDELSSLFGGDIKPQVFPV-KTPYIIMLVGVQGSGKTTTAAKIAYFYK 123

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             G +  L   DT+R AA +QL   + +    F      SD   +A +          ++
Sbjct: 124 RYGYRPCLICTDTYRPAAYEQLYQLSKQIDVPFCGDPKSSDPIDIAKKCLSYCINNNTNI 183

Query: 197 LIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +IIDTAGR        L+  +  + + +       P  V+ ++DA+ GQ A      FH+
Sbjct: 184 IIIDTAGRHGYGEEEYLLKEMQDIAKAVN------PDEVMLIIDASIGQKAYDLALRFHS 237

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
                 +++TK+DGTA+GGG +  V   K  + F+G GE I +LE F  + F   I G  
Sbjct: 238 ATPIGSIVITKLDGTAKGGGALSAVAATKAIIKFIGTGEKIPELEVFDPRRFVGRILGLG 297

Query: 315 DY 316
           D 
Sbjct: 298 DL 299


>gi|224373550|ref|YP_002607922.1| signal recognition particle-docking protein FtsY [Nautilia
           profundicola AmH]
 gi|223588955|gb|ACM92691.1| signal recognition particle-docking protein FtsY [Nautilia
           profundicola AmH]
          Length = 289

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 98/296 (33%), Positives = 163/296 (55%), Gaps = 17/296 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           + KG   T    KE +  ++ S + +   ++ +E+ L+ +D+   + +KI+  L  +   
Sbjct: 5   IKKGLNKT----KEALKSVVGSEKKEKLPKDLIEEALLEADMDYDLVEKIINRLPEEVTK 60

Query: 77  KDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           + +  +   ++ V +             + + + +P   L++GVNG GKTT I KL+ K 
Sbjct: 61  EKLKKELAWVFSVPK------------NDIEINDKPFTFLIIGVNGAGKTTTIAKLAHKF 108

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G  V+L A DTFR+AAI+QL  WA+      V ++ G D AA+ Y+    A+AK +D
Sbjct: 109 KSEGKSVILGAADTFRAAAIEQLTKWAEILDVPIVKTKQGHDPAAVTYDTIASAKAKGID 168

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           + IIDTAGRLHN   L   + K++ V K+   +APH ++ ++D T G +A+ Q ++F  +
Sbjct: 169 IAIIDTAGRLHNKVNLQNELKKIVNVAKKAYENAPHKIVLIIDGTQGSSAINQAKVFKEI 228

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            G  G+I+TK+DGTA+GG +  I    ++P+ F+GVGE   DL  F   +F   I 
Sbjct: 229 VGVDGVIITKLDGTAKGGSIFTIGHELQLPILFVGVGEKPEDLVKFDKNEFIEGIL 284


>gi|308189636|ref|YP_003922567.1| cell division protein [Mycoplasma fermentans JER]
 gi|307624378|gb|ADN68683.1| cell division protein [Mycoplasma fermentans JER]
          Length = 355

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 109/300 (36%), Positives = 177/300 (59%), Gaps = 8/300 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + K   G + +S  L + I ++ +  + +++   +ELE++LI SDI   +   I+  +  
Sbjct: 47  LDKYATGLSKSS-SLGKQIFNLQNKHKEINEEFFDELEEILIMSDINAKLVYAIITHIKN 105

Query: 73  KRYAKDVSVQRVLYDVSE----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  A+ +   + + ++      +++     +    N+    R ++ + VGVNG GKTT I
Sbjct: 106 EVRARGLKDTKDIGELVADQMFVVYTNKSIVDTTLNYQ-DGRLNIFIFVGVNGSGKTTSI 164

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFK 187
            K++ K    G KV++AAGDTFR+ A+DQL +WA+R  A  V   + G+D +++ YEA +
Sbjct: 165 AKIAYKYIKEGKKVLIAAGDTFRAGAVDQLGVWAERVGAPIVKPVKEGADPSSVVYEALE 224

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +AQ +K D+L+IDTAGRL N   LM  + KM  ++ R    APH  L VLDATTGQN + 
Sbjct: 225 KAQNEKYDLLLIDTAGRLQNKVNLMKELEKMYGIIARFQDKAPHECLLVLDATTGQNGVS 284

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F  VA  TG+I+TKMDGT++GG ++ I     + V ++G+GEG++DL+ F   +F 
Sbjct: 285 QARSFKEVAAPTGIILTKMDGTSKGGIVLSIKDEFDLNVKYIGLGEGLDDLQEFDLDNFI 344


>gi|307721676|ref|YP_003892816.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979769|gb|ADN09804.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sulfurimonas
           autotrophica DSM 16294]
          Length = 451

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 145/300 (48%), Gaps = 14/300 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + +      I  I   R  DD         EL+  L+++D+   V +++++++  +  
Sbjct: 2   FGTLTDSFTNAIKKI---RFHDDDKALSKALNELKKNLLKADVNHKVVKELIQKVQIRTK 58

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            K +   + L  + E ++++L            + P VIL+ G+ G GKTT  GKL+  +
Sbjct: 59  EKGIGKDQFLEALRETLNELLEVGGNKGFVFAPNPPTVILMTGLQGSGKTTTTGKLATYL 118

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
            + G KV++ A D  R AA++QL+        +    E   +   +   A K A +K  D
Sbjct: 119 KNKGKKVLIVAADLQRLAAVEQLRQITSAIEVELYEDEATKNPVEVVKAALKYADSKIFD 178

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V++IDTAGRL  +  LM  +  +       D   P  +  V D+ TGQ+A+R    F   
Sbjct: 179 VVLIDTAGRLAIDDELMDELKAVK------DAAKPDEIFYVADSLTGQDAVRTATTFKEK 232

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+I++K DG A+GG  + +    ++P+ F+G+GE + DLE F+ +     + G  D
Sbjct: 233 IGIDGVILSKYDGDAKGGVALGLSSQVQVPLRFIGMGEKMEDLEVFLPERIVNRLMGFGD 292


>gi|284097824|ref|ZP_06385807.1| signal recognition particle protein [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830666|gb|EFC34793.1| signal recognition particle protein [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 469

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 144/308 (46%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F++ + K+   +  +  +  L +       +E+   L+ +D+   V +  +  +  K   
Sbjct: 8   FSALTDKIDGVLKKLRGAGVLKEQDVVQALKEVRLALLEADVNFRVVKDFIGRVQEKATG 67

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V       Q+V+  V E +  ++       +   S  P ++++VG+ G GKTT  GK+
Sbjct: 68  GHVLESLTPGQQVVKIVWEELRALMGHDHSGLSLS-SQPPTIVMMVGLQGAGKTTTCGKV 126

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE----IGSDAAALAYEAFK 187
           ++  ++ G +V+L A D  R AA +QL             ++       +      E  +
Sbjct: 127 ARVFTEQGKRVLLIAADPRRPAAAEQLAALGAGLDVPVHRADRALSTRLEVVHFCSEGVR 186

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           + +    DV+I+DT GRLH +  LM  + ++   +       P  VL V DA TGQ A+ 
Sbjct: 187 RGRDHGYDVVILDTGGRLHVDDDLMLELEQIKAAVT------PQEVLLVADAMTGQEAVN 240

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             E F    G TG+I+TK++G ARGG L+ +  T   PV +LGVGE  + LEPF     +
Sbjct: 241 VAEQFDQRVGMTGVILTKIEGDARGGALLSMRATIGKPVKYLGVGEKSDALEPFHPDRMA 300

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 301 SRILGMGD 308


>gi|168188030|ref|ZP_02622665.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum C str. Eklund]
 gi|169294126|gb|EDS76259.1| signal recognition particle-docking protein FtsY [Clostridium
           botulinum C str. Eklund]
          Length = 302

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 120/302 (39%), Positives = 193/302 (63%), Gaps = 5/302 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   KL  G + T     E ++++++ + ++D+ + EELE++LI +DIGV  +  +++ +
Sbjct: 4   NLFNKLKDGLSKTKNNFTEKVSEVLNLAVKIDEDLFEELEEILITADIGVDTSLDVIDRV 63

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K   K ++  + +Y  + E++ ++L   +K    + +  P  +LV+GVNG GKTT IG
Sbjct: 64  KIKVKEKRITDPKEVYSCLKEVLIEILNEENK---VEENITPKTVLVIGVNGAGKTTSIG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K+S ++ + G KV++AA DTFR+AAIDQL++W++R   D +  + GSD A++ ++A + A
Sbjct: 121 KMSHRLKEDGYKVLMAAADTFRAAAIDQLEVWSNRAGVDIIRHQEGSDPASVVFDAIQAA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+K DVLI DTAGRLHN   LM  + K+ R++ R    +    L VLD TTGQNAL+Q 
Sbjct: 181 KARKTDVLICDTAGRLHNKKNLMNELEKINRIIDREYGESKKETLLVLDGTTGQNALQQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  V    G+++TK+DGTA+GG +I I     IPV F+GVGEGI+DL+ F A+ F   
Sbjct: 241 KQFAEVCPIDGIVITKLDGTAKGGVIIAIKHQLNIPVKFIGVGEGIDDLQEFDAESFVEA 300

Query: 310 IT 311
           + 
Sbjct: 301 LF 302


>gi|152990801|ref|YP_001356523.1| signal recognition particle receptor FtsY [Nitratiruptor sp.
           SB155-2]
 gi|151422662|dbj|BAF70166.1| signal recognition particle receptor FtsY [Nitratiruptor sp.
           SB155-2]
          Length = 286

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 95/257 (36%), Positives = 146/257 (56%), Gaps = 14/257 (5%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVI 114
           +D+   + +KIV  L  K                  +   L+ L KP +  +   +P V 
Sbjct: 38  ADVEYDLVEKIVNSLPGKINRV-------------ALKNELLFLFKPASIKEVDVKPFVE 84

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L++GVNG GKTT I KL+ +    G  V+L A DTFR+AAI+QL  WAD+     V ++ 
Sbjct: 85  LILGVNGAGKTTTIAKLAYRYKREGKSVILGAADTFRAAAIEQLTKWADKLDVPIVATKQ 144

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G D +A+AY+  ++A++K +D ++IDTAGRLH  S L   + K++R+  +    APH  L
Sbjct: 145 GHDPSAVAYDTIQKAKSKGIDHVLIDTAGRLHTQSNLAEELKKIVRICGKAMEGAPHRKL 204

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            +LD T G +A+ Q + FH + G  G+I+TK+DGTA+GG L+ I     +P+ ++G GE 
Sbjct: 205 LILDGTQGNSAIHQAKAFHEMVGVDGIIVTKLDGTAKGGALLSISHEMGLPILYVGTGEK 264

Query: 295 INDLEPFVAKDFSAVIT 311
           + DL PF   ++   I 
Sbjct: 265 MEDLAPFDPNEYVDTIL 281


>gi|302815721|ref|XP_002989541.1| hypothetical protein SELMODRAFT_129975 [Selaginella moellendorffii]
 gi|300142719|gb|EFJ09417.1| hypothetical protein SELMODRAFT_129975 [Selaginella moellendorffii]
          Length = 467

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 136/304 (44%), Gaps = 14/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT--KR 74
                 ++   I  + ++  +DD        E+   L+++D+   + Q +   +    ++
Sbjct: 3   LGELGSRISGAIQRLNTATVIDDKALTICVNEITHALLQADVQFKLVQALSSNVRKSVEK 62

Query: 75  YAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            A     + ++   V   +H ML    KP       R + +++VG+ G GKTT   K + 
Sbjct: 63  LAAGHDKRHIIQKAVFHELHAMLDA-GKPSFTPTKGRTNAVMLVGLQGCGKTTTCTKYAL 121

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G    L   DTFR+ A DQLK  A +    F  S   +D   +A E  ++    K
Sbjct: 122 HYRKKGFNPALVCADTFRAGAFDQLKQNATKVKIPFYGSYTETDPVVIAQEGVRKFADTK 181

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D++I+DT+GR    + L   + ++           P  ++ V+D++ GQ A  Q   F 
Sbjct: 182 HDLIILDTSGRHKQENALFEEMRQLAAATN------PDLIIFVMDSSIGQAANDQALAFR 235

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             A    +I+TK+DG A+GGG +  V   K P+ FLG GE  +D E F +K F + + G 
Sbjct: 236 ESAKVGAVIITKIDGHAKGGGALSAVAATKSPIIFLGTGEKADDFETFESKAFVSRLLGM 295

Query: 314 LDYG 317
            D  
Sbjct: 296 GDLA 299


>gi|89898035|ref|YP_515145.1| cell division related signal recognition particle GTPase
           [Chlamydophila felis Fe/C-56]
 gi|89331407|dbj|BAE81000.1| cell division related signal recognition particle GTPase
           [Chlamydophila felis Fe/C-56]
          Length = 285

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 100/284 (35%), Positives = 151/284 (53%), Gaps = 6/284 (2%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
               I  +   + L   + E  E L   +D G  + +++   L   R   + +V+ +   
Sbjct: 5   FSSKIQSLF-KKALSADLLEFTESLFYEADFGSELTEELCSRLRKCRKPDESTVKDL--- 60

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           VS L+ + L  L  P        P V L++G NG GKTT + KL+        KVM+ A 
Sbjct: 61  VSSLLRETLANL--PIIKSEKDTPVVSLMLGTNGSGKTTTVAKLAHYYLSRSEKVMIVAT 118

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFRSA +DQ++ WA++    FV  + G D AA+AY+    A+++  D +IIDT+GRLH 
Sbjct: 119 DTFRSAGMDQMRCWAEKLGCGFVSGKPGGDPAAIAYDGIASAKSRGYDRVIIDTSGRLHT 178

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           ++ L+  + K++ V  ++   +PH  L  +DAT G N + QV +FH     +GLI+TK+D
Sbjct: 179 HTNLLNELSKIVSVCNKVHAGSPHERLMTIDATLGGNVIEQVRVFHETIPLSGLILTKVD 238

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G+A+GG L  I    KIP  F+G GE I DLE F    F   + 
Sbjct: 239 GSAKGGTLFRIAKQLKIPTKFVGYGELIGDLEEFHIDRFLEKLF 282


>gi|225155878|ref|ZP_03724364.1| signal recognition particle protein [Opitutaceae bacterium TAV2]
 gi|224803428|gb|EEG21665.1| signal recognition particle protein [Opitutaceae bacterium TAV2]
          Length = 452

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 143/305 (46%), Gaps = 19/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S + KL   +  +    +L +       +E+   L+ +D+   V ++ V+ +  +   
Sbjct: 2   FESLTDKLSNALRHLRGVGKLTEENMAEALKEVRTALLSADVHFKVVREFVDRVQQQVVG 61

Query: 77  ----KDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K V+  Q+++  + + + ++L   +   +   + RP  IL+VG++G GKTT   KL
Sbjct: 62  QEVMKGVTPGQQIVKIIHDELVRLLGEGTTELS---AARPLKILMVGLHGSGKTTSTAKL 118

Query: 132 SKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K +   G  K  +   D +R AAIDQL+I A +    F    +  D  A+     + A+
Sbjct: 119 GKLLKKRGYNKPFVVGCDIYRPAAIDQLEILAKQEDLGFYSDRVSKDVPAIGAAGLEAAR 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A   D +  DTAGRL  +  L+  + K+   ++      P  V  V D   GQ A+   +
Sbjct: 179 AAGADAIFFDTAGRLQIDQDLIEEVKKLRARIQ------PDEVFLVADGALGQEAVNVAK 232

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TGLI+TK+DG ARGG  + I     +P+ F+G GE   D E F     ++ I
Sbjct: 233 AFHEAVQLTGLILTKLDGDARGGAALSIKSITGVPIKFVGTGEKTADFESFYPDRLASRI 292

Query: 311 TGCLD 315
            G  D
Sbjct: 293 LGMGD 297


>gi|3334340|sp|O15821|SRP54_ENTHI RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|17980209|gb|AAL50553.1| signal recognition particle 54 kDa subunit SRP54 [Entamoeba
           histolytica]
          Length = 487

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 145/304 (47%), Gaps = 14/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            +     L   +  + SS  +D+ V     +E+E  L+  D+     +++V  +  K  +
Sbjct: 3   LSQLGSSLVTALRKMTSSTVVDEEVINTLLKEIETSLLGEDVNPIFIRQMVNNIKKKINS 62

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLS 132
           +D+        +  + + + L+ L  P    F  +     V+++VG+ G GKTT I KL+
Sbjct: 63  EDIPDGIDKRKLIKDSVFEELINLVDPKTEAFKPKKGKTCVLMMVGLQGAGKTTTITKLA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
               + G K  +   DTFR+ A +QL++ A R    F   +  SD   +A E  +  + +
Sbjct: 123 LYYKNRGYKPAVVGADTFRAGAYEQLQMNAKRAGVPFFGIKEESDPVKVASEGVRTFRKE 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D++++DT+GR   +  L   +  +   +K      P S++ V+D   GQ A  Q + F
Sbjct: 183 KNDIILVDTSGRHKQDKELFKEMQSVRDAIK------PDSIIFVMDGAIGQAAFGQAKAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                   +I+TK+DG + GGG +  V   K P+ F+G GE +N++E F A+ F   + G
Sbjct: 237 KDAVEVGSVIITKLDGHSNGGGALSAVAATKSPIIFIGTGEKVNEIEEFDAESFVRQLLG 296

Query: 313 CLDY 316
             D 
Sbjct: 297 MGDL 300


>gi|323302581|gb|EGA56388.1| Srp54p [Saccharomyces cerevisiae FostersB]
          Length = 452

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 148/311 (47%), Gaps = 22/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELL---- 71
            A    ++   + + IS+ + D     D + + +   L+ SD+ +A+  K+   +     
Sbjct: 3   LADLGKRINSAVNNAISNTQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRSQLL 62

Query: 72  -TKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILVVGVNGVGK 124
              R  K  +  +    + + +   L  L       +        + ++I+ VG+ G GK
Sbjct: 63  SENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEEKAFVPKKRKTNIIMFVGLQGSGK 122

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT   KL+   S  G KV L   DTFR+ A DQLK  A R    F  S   +D A +A E
Sbjct: 123 TTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRARIPFYGSYTETDPAKVAEE 182

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              + + +K D++I+DT+GR H    L   + ++  V+K      P+  + VLDA+ GQ 
Sbjct: 183 GINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIK------PNQTIMVLDASIGQA 236

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A +Q + F   +    +I+TKMDG ARGGG I  V     P+ F+G GE I+DLE F  K
Sbjct: 237 AEQQSKAFKESSDFGAIILTKMDGHARGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPK 296

Query: 305 DFSAVITGCLD 315
            F + + G  D
Sbjct: 297 SFISKLLGIGD 307


>gi|289450609|ref|YP_003474968.1| signal recognition particle-docking protein FtsY [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185156|gb|ADC91581.1| signal recognition particle-docking protein FtsY [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 304

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 120/304 (39%), Positives = 182/304 (59%), Gaps = 6/304 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +++  +   G A T   L  GI  I ++    D+ + +ELE+LL+++D+GV  A  ++E+
Sbjct: 1   MAFFERFKAGLAKTRDFLNGGINKISAAMGHFDEDMLDELEELLVQADVGVPCATFLMEK 60

Query: 70  LLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTV 127
           +    +  KD S   V+  + E I  +L     P        R ++IL++GVNG GKTT 
Sbjct: 61  VRKDIKVNKDNSRAAVINSLREGIVAVLGD---PLKLTLKPDRLNIILLIGVNGTGKTTT 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+ +   AG KV+LAA DTFR+AAIDQLK WA+ T    +    GSD AA+ Y++ +
Sbjct: 118 CGKLALRYRQAGKKVLLAAADTFRAAAIDQLKYWAELTGTPCIAYPEGSDPAAVVYDSVQ 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+  DVL++DTAGRLHN   LM  + K+ R++KR  P+A    + ++DA TGQNA+ 
Sbjct: 178 AAKARAADVLLVDTAGRLHNKQNLMDELAKLYRIIKREAPNAALESILIVDANTGQNAVI 237

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q E F+A A  TGLI+TK+DG ++GG  + +    K+P+Y +G+GE   DL  F   +F 
Sbjct: 238 QAEKFNAAAQLTGLIITKLDGNSKGGVAVAVANAVKLPIYMVGLGERAEDLADFAVNEFV 297

Query: 308 AVIT 311
             + 
Sbjct: 298 DSLL 301


>gi|317014538|gb|ADU81974.1| signal recognition particle protein [Helicobacter pylori
           Gambia94/24]
          Length = 448

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 150/296 (50%), Gaps = 13/296 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++  A  +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKASGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  +    
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKN 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV+L A D  R AA++QLK+  ++   +    E       +A  A K+A+  + DVLI+
Sbjct: 123 KKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIANNALKRAKEAQFDVLIV 181

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D+AGRL  +  LM  + ++  +L       PH VL V DA +GQ+ ++    F+   G +
Sbjct: 182 DSAGRLAIDKELMQELKEVKGILT------PHEVLYVADALSGQDGVKSANTFNEEIGVS 235

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV +     + G  D
Sbjct: 236 GVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDMFVPERIVGRLMGAGD 291


>gi|254580797|ref|XP_002496384.1| ZYRO0C17138p [Zygosaccharomyces rouxii]
 gi|238939275|emb|CAR27451.1| ZYRO0C17138p [Zygosaccharomyces rouxii]
          Length = 536

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 147/309 (47%), Gaps = 20/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            A    ++   +   +S+ + D     D + + +   L+ SD+ + +  K+   L  K  
Sbjct: 3   LADLGKRINTAVNSALSNTQDDYATTVDVMLKTIVTALLESDVNIKLVSKLRNNLRIKLL 62

Query: 76  -----AKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTT 126
                 K  +  +    + + + + L  L    S+        + +VI+ VG+ G GKTT
Sbjct: 63  DSKSGNKSTTNAQTKKLIQKTVFEELCDLVDCKSEQPFQPKKKKTNVIMFVGLQGSGKTT 122

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+   S  G KV L   DTFR+ A DQLK  A +    F  S + +D   +A E  
Sbjct: 123 SCTKLAVYYSRRGFKVGLVCADTFRAGAFDQLKQNAIKAHIPFYGSYVETDPVKVAAEGI 182

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            + + +K +V+I+DT+GR H    L   + ++  V+       P+  + VLDA+ GQ A 
Sbjct: 183 AKFKKEKFEVIIVDTSGRHHQEEALFQEMVEISTVVN------PNQTIMVLDASIGQAAE 236

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +Q + F   A    +++TKMDG A+GGG I  V     P+ F+G GE I+DLE F  K F
Sbjct: 237 QQSKAFKETADFGAILLTKMDGHAKGGGAISAVAATNTPIIFIGTGEHIHDLERFSPKSF 296

Query: 307 SAVITGCLD 315
            + + G  D
Sbjct: 297 ISKLLGIGD 305


>gi|2231060|emb|CAA73234.1| fifty-four homologue of SRP54 [Sulfolobus acidocaldarius]
          Length = 446

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 140/302 (46%), Gaps = 13/302 (4%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           +     L++ +   + S   +  V E   EL+ +LI++D+ V + + + + +  +   + 
Sbjct: 1   SKLLDGLRDAVRKFLGSSDYEKAVNEFIKELQIILIKADVNVRLVKDLTDRIKKRITEEK 60

Query: 79  -----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
                   +  +  V + + ++     +P        P++I++VGV G GKTT  GKL+ 
Sbjct: 61  PPSAIEKREWFISIVYDELSRLFGGDKEP-EVMPKKLPYIIMLVGVQGSGKTTTSGKLAL 119

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G KV L A D +R AA +QL     + +          +   +A    ++   +K
Sbjct: 120 FYKKKGYKVGLVAADIYRPAAYEQLIQIGQQINIPVYGEPGNKNPIEIATNGLEKFLKEK 179

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           ++++IIDTAGR             +  +    D   P  V+ V+DA+ GQ A      FH
Sbjct: 180 MNIVIIDTAGRHG----YGEEASLLEEMKSMYDKIHPDEVILVIDASIGQKAYDLASRFH 235

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             +    LI++KMDGTA+GGG +  V+     + F+G GE +++LE F  + F + + G 
Sbjct: 236 QASPIGSLIVSKMDGTAKGGGALSAVIATGAQIKFIGTGEKLDELEVFNPRRFVSRLLGL 295

Query: 314 LD 315
            D
Sbjct: 296 GD 297


>gi|89898160|ref|YP_515270.1| signal recognition particle GTPase [Chlamydophila felis Fe/C-56]
 gi|89331532|dbj|BAE81125.1| signal recognition particle GTPase [Chlamydophila felis Fe/C-56]
          Length = 448

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 137/287 (47%), Gaps = 17/287 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           I+   + + +RE +   L+ +D+   V +  + ++  K   ++V       Q+ +  + E
Sbjct: 22  ITEENISEAIRE-VRLALLDADVNYHVVKSFIAKVKQKILGEEVWKHVSPGQQFIRHLHE 80

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGD 148
            + ++L  +S   +   S  P V+L+ G+ G GKTT   KL+  +       KV++   D
Sbjct: 81  ELTELL--ISSEADLTTSGNPGVVLLCGLQGTGKTTTCAKLAAYVLEKRKAKKVLVVPCD 138

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             R AA+DQL+    +T A+   SE   D   +  +A   A+    D+++IDTAGRLH +
Sbjct: 139 LKRYAAVDQLRNLISKTKAELYNSEA-QDPVKVVSQALDYAKQNGHDLVLIDTAGRLHVD 197

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             +M  +  + +  K          L V++   GQ+A+   + F      TG+I++  DG
Sbjct: 198 EAMMEELASIQKASKSC------ERLFVMNLAMGQDAVTTAKAFDDCLDLTGVIISMTDG 251

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            AR G ++ +      P+ F G GE I DL PF A+  +  I G  D
Sbjct: 252 DARAGAVLSMKSLLGKPIKFEGCGEKIQDLRPFNAESMADRILGMGD 298


>gi|322434661|ref|YP_004216873.1| signal recognition particle-docking protein FtsY [Acidobacterium
           sp. MP5ACTX9]
 gi|321162388|gb|ADW68093.1| signal recognition particle-docking protein FtsY [Acidobacterium
           sp. MP5ACTX9]
          Length = 338

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 3/312 (0%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGV 60
           +++++         ++ +    T     + I  +++ +R +D+    +LE +L+ +DIG 
Sbjct: 27  ASEEIDPPRRGLFDRMRQAVTRTRESFSDSIGQVLALTREVDESTLIDLEPILLAADIGS 86

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           A    ++E L  +   K +     L ++    +  +L  +S+         P VI++VGV
Sbjct: 87  ATTAIVLENLRQRALRKGIEGGSELKELLRVELKSILDGVSQQ-TIPAVAAPEVIMMVGV 145

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT  GKL+         V+L A DTFR+AAI+QL++WA R+    + ++ G D +
Sbjct: 146 NGTGKTTTTGKLAAYFRRQNRTVLLCAADTFRAAAIEQLEVWATRSDVPIIKTKQGGDPS 205

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A  Y+A   A+A+   VLI+DTAGRLH  S LM  + KM R  +RL P APH    V+DA
Sbjct: 206 AALYDACTAAKARGTQVLIVDTAGRLHTKSDLMKELDKMRRTAERLVPGAPHQTFLVMDA 265

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN L+Q  +F   A  TG+++TK+DGTA+GG ++ I    K+PV + G GE I+DL 
Sbjct: 266 TTGQNGLQQARLFTEAARVTGIVLTKLDGTAKGGIVLAIATELKLPVVYAGTGEKIDDLI 325

Query: 300 PFVAKDFSAVIT 311
           PF +  F   + 
Sbjct: 326 PFDSSTFIDSLL 337


>gi|317031653|ref|XP_001393946.2| signal recognition particle protein [Aspergillus niger CBS 513.88]
          Length = 533

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 139/306 (45%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + + +    
Sbjct: 3   LQDLGRRINAAVNDLTRSNNLDEKAFDDMIKEICAALLSADVNVRLVQSLRKSIKSSVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ++ P ++PF      R +VI+ VG+ G GKTT   KL
Sbjct: 63  ASLPPAVNKKRLIQKAVFDELVSLVDPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + 
Sbjct: 122 ARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAAEGVAKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ +++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   
Sbjct: 182 ERFEIIIVDTSGRHKQEEELFTEMTQIQTAVT------PDQTILVLDSTIGQAAEAQSSA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A A    +I+TK DG A GGG I  V     P+ +LG GE + DLE F  K F   + 
Sbjct: 236 FKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIYLGTGEHLMDLERFEPKAFIQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|154338231|ref|XP_001565340.1| signal recognition particle [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134062389|emb|CAM42250.1| putative signal recognition particle [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 566

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 88/306 (28%), Positives = 150/306 (49%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLT 72
            A    K+ + I  + +   L +D V+E   E+   L+++D+ VA+ +K    I  EL  
Sbjct: 47  LAELGQKIGQAIHRMSAKSVLSEDDVKELMNEIARALLQADVNVAIVKKLQVSIKTELAL 106

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                 ++ +++L + V + + ++L P  KPF      + +V+L VG+ G GKTT   K 
Sbjct: 107 AEEGVGLNKRKILQNAVFKGLQRILDPGVKPF-MPVKGKQNVVLFVGLQGSGKTTSCTKY 165

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQL+  A +    F  S   +D  A+A E   + + 
Sbjct: 166 AAYFQRKGFKTALVCADTFRAGAYDQLRQNATKAKVRFYGSLTEADPVAIAREGVAELKK 225

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR    + L   + ++   +K      P+ ++ V+ AT GQ    Q   
Sbjct: 226 EKYDLIIVDTSGRHKQEAALFEEMKQVEEAVK------PNDIVFVMSATDGQAVEAQASH 279

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A+     +I+TK+D   +GGG +  V   + P+ F+G GE  +D + F  + F   + 
Sbjct: 280 FKAMVPVGSVIVTKLDCQTKGGGALSAVAATRSPIVFIGTGEHFDDFDLFRPERFVQKML 339

Query: 312 GCLDYG 317
           G  D G
Sbjct: 340 GMGDIG 345


>gi|162447215|ref|YP_001620347.1| signal recognition particle GTPase [Acholeplasma laidlawii PG-8A]
 gi|161985322|gb|ABX80971.1| signal recognition particle GTPase [Acholeplasma laidlawii PG-8A]
          Length = 467

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 139/304 (45%), Gaps = 18/304 (5%)

Query: 23  STSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           S S +L+  +       RL +     +  E+   L+ +D+   + ++    +  +   + 
Sbjct: 4   SLSDRLQMFVRRATGRGRLTEKDVEEMMREVRLSLLEADVNFKIVKEFTNNVKEQALGEK 63

Query: 79  V-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           +       Q+V+  V + + +++   S   N+  +      + +G+ G GKTT IGK+  
Sbjct: 64  ILNGLNPGQQVVKIVHDELKRVMGEESVGLNY-ANTGLSTFMTIGLQGSGKTTAIGKMGL 122

Query: 134 KMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +      KVML A D +R AAIDQL              E   DA  +     K A+  
Sbjct: 123 YIRKKDKKKVMLVAADVYRPAAIDQLVTIGKGLGIHVY-EEGIKDARVIVKNGLKYAKDN 181

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV+I+DTAGRL  +  +M  +  +  +LK      P+ VL  +DA  GQ A    + F
Sbjct: 182 NYDVVIVDTAGRLTIDEDMMQELKDVKEILK------PNEVLLTVDAMMGQEAANVAKSF 235

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           H   G TG+I+TKMDG  RGG  + I    +IP+ F   GE ++ LE F  +  ++ I G
Sbjct: 236 HDQIGATGVILTKMDGDTRGGAALSIREISQIPIKFASSGEKMDSLEAFHPERMASRILG 295

Query: 313 CLDY 316
             D 
Sbjct: 296 MGDM 299


>gi|213586204|ref|ZP_03368030.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 269

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 80/275 (29%), Positives = 137/275 (49%), Gaps = 17/275 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            K + +    KV++ + D +R AAI QL+  A++   DF  S++G     +   A K+A+
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVL++DTAGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK------PVETLFVVDAMTGQDAANTAK 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            F+     TG+++TK+DG ARGG  + I      P
Sbjct: 235 AFNEALPLTGVVLTKVDGDARGGAALSIRHITGKP 269


>gi|169335336|ref|ZP_02862529.1| hypothetical protein ANASTE_01748 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258074|gb|EDS72040.1| hypothetical protein ANASTE_01748 [Anaerofustis stercorihominis DSM
           17244]
          Length = 298

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 113/297 (38%), Positives = 171/297 (57%), Gaps = 2/297 (0%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            K  KG   T   L   + D+ SS ++DD + EEL ++LI SDI   V+++I+E +    
Sbjct: 4   EKYNKGLDKTKKSLLSKLKDVFSSNKIDDDLYEELIEVLILSDIPFNVSEEIIENVKENA 63

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             KDV     LYD+ +   ++   L+         +P +IL +GVNG GKTT I KL+ K
Sbjct: 64  TKKDVKDINKLYDLIK--DEIRNRLNLNLWDKEIKKPALILFIGVNGAGKTTTIAKLANK 121

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
                 KV+LAA DTFR+AA +QL  WA+R +   V S  G D A++ Y+    A+AK +
Sbjct: 122 FLKEDKKVILAAADTFRAAASEQLATWAERLNVPIVKSSQGQDPASVIYDCLDSAKAKDM 181

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D+++ D+AGRL N   LM  + K+ RV  +         + VLDA  GQN++ Q E F+ 
Sbjct: 182 DIILADSAGRLQNKKNLMDELNKIYRVCDKFKGDYNLYTVLVLDAGAGQNSVIQAESFNE 241

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            A   G+IMTK+DG+A+GG ++ +   +K P++++G+GEG++DLE F   +F   I 
Sbjct: 242 SAKVDGIIMTKLDGSAKGGVIVSLAGDNKPPMWYIGLGEGLDDLEEFDVDNFVDAII 298


>gi|50306973|ref|XP_453464.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642598|emb|CAH00560.1| KLLA0D09020p [Kluyveromyces lactis]
          Length = 530

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 143/310 (46%), Gaps = 22/310 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELLT--- 72
            A    ++   +T+ IS+ + D       + +E+   L+ +D+ + +  ++ E +     
Sbjct: 3   LADLGKRINNAVTNAISNEQTDYETTVQSMLKEIATALLENDVNIRLVSRLRENIKNTLL 62

Query: 73  --KRYAKDVSVQRVLYDVSELIHKMLM-----PLSKPFNWDFSHRPHVILVVGVNGVGKT 125
                    +  +    + + +   L       ++ PF        +VI+ VG+ G GKT
Sbjct: 63  SNANVNAKFTNAQTKKLIQKTVFDELCNLVDCEVTSPFQPKKRQS-NVIMFVGLQGSGKT 121

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T   KL+   S  G KV L   DTFR+ A DQLK  A +    F  S    +   +A + 
Sbjct: 122 TSCTKLAVYYSKRGYKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTEPNPVKVAKDG 181

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             + + +K +++I+DT+GR      L   + ++ + +K      P   + VLDA+ GQ A
Sbjct: 182 VDKFKKEKFEIIIVDTSGRHQQEDSLFQEMVEISQAVK------PKQTIMVLDASIGQAA 235

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
             Q + F   A    +I+TKMDG ARGGG I  V +   P+ F+G GE I+D E F  K 
Sbjct: 236 EHQSKAFKESADFGSIILTKMDGHARGGGAISAVASTNTPIIFIGTGEHIHDFEKFSPKS 295

Query: 306 FSAVITGCLD 315
           F + + G  D
Sbjct: 296 FVSKLLGIGD 305


>gi|42560958|ref|NP_975409.1| Signal recognition particle M54 protein [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|42492455|emb|CAE77051.1| Signal recognition particle M54 protein [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301320640|gb|ADK69283.1| signal recognition particle protein [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 447

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 148/302 (49%), Gaps = 19/302 (6%)

Query: 24  TSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            S ++++ I   + +  L++       +E+   L+ +D+ +   ++I+  +  K     +
Sbjct: 7   LSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEATKEIINNVKQKALGGYI 66

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                + Q+++  V E +  +L   + P   + + +P V+++VG+ G GKTT   KL+  
Sbjct: 67  FEGANAHQQMIKIVHEELVNILGKENAPL--ELNKKPSVVMMVGLQGSGKTTTANKLAYL 124

Query: 135 MSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           ++    K +L  G D +R  AI+QL     +T+          D    A EA + AQ   
Sbjct: 125 LNKKNKKKVLLVGLDIYRPGAIEQLIQLGQKTNIQVFEKG-KQDPILTAQEALEYAQENN 183

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DV+I+DTAGRL  + +LM  +  + +        +P  +L V+D  +GQ  +     F+
Sbjct: 184 FDVVILDTAGRLQVDQVLMTELDNLKK------KTSPSEILLVVDGMSGQEIINVTNEFN 237

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +    +G+++TK+DG ARGG  + I    K+P+ F+G GEG N L  F  K  +  + G 
Sbjct: 238 SKLKLSGVVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGM 297

Query: 314 LD 315
            D
Sbjct: 298 GD 299


>gi|327310166|ref|YP_004337063.1| GTP-binding signal recognition particle SRP54 [Thermoproteus
           uzoniensis 768-20]
 gi|326946645|gb|AEA11751.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Thermoproteus uzoniensis 768-20]
          Length = 437

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 92/302 (30%), Positives = 152/302 (50%), Gaps = 18/302 (5%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVE----ELLTKRY 75
            +    + +  I     +D+   +E    L+  L+++D+ + + +   +     +  +R 
Sbjct: 4   LTELFSKLVEKIRGVEYIDEQTLQEISRELQRSLLKADVPLDMVRAFTDTAVRRIREERP 63

Query: 76  AKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
              + V+  + Y + + + K+L   ++P +     RP+VI+++GV G GKTT   K++  
Sbjct: 64  PPGIPVKDFVIYVIYQELVKLLGGEAEP-DLKLPKRPYVIMLLGVEGSGKTTTAAKIALF 122

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               GLKV +   DT R AA DQLK  A+R  A F     G+DA  +A    +Q +   V
Sbjct: 123 YIKRGLKVGVVETDTIRPAAYDQLKQLAERVGARFYGERDGNDAVGIARRGLEQMK--GV 180

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++++DTAGR  N   L+  +  +   +K      P  V+ V+DAT G+ A  Q E F  
Sbjct: 181 DLVLVDTAGRHKNEQSLLEEVKAIYDAIK------PDEVMLVVDATVGRQAAAQAEAFMK 234

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
                 + +TKMD TARGGG +  V      V F+GVGEG++++EPF  + F A + G  
Sbjct: 235 YVPIHSVAITKMDSTARGGGALAAVAKTGARVKFIGVGEGVDEIEPFSPRKFVARVLGMG 294

Query: 315 DY 316
           D 
Sbjct: 295 DL 296


>gi|121718228|ref|XP_001276141.1| signal recognition particle protein SRP54 [Aspergillus clavatus
           NRRL 1]
 gi|119404339|gb|EAW14715.1| signal recognition particle protein SRP54 [Aspergillus clavatus
           NRRL 1]
          Length = 524

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 139/306 (45%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + + +    
Sbjct: 3   LQDLGRRINAAVNDLTRSNNLDEKAFDDMIKEICAALLSADVNVRLVQTLRKSIKSSVNF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ++ P ++PF      R +VI+ VG+ G GKTT   KL
Sbjct: 63  SSLPPAVNKKRLIQKAVFDELVALVNPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + 
Sbjct: 122 ARHYQTRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ +++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   
Sbjct: 182 ERFEIIIVDTSGRHKQEEDLFTEMTQIQNAVT------PDQTILVLDSTIGQAAEAQSAA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + 
Sbjct: 236 FKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHLMDLERFEPKAFVQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|50292271|ref|XP_448568.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527880|emb|CAG61531.1| unnamed protein product [Candida glabrata]
          Length = 532

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 145/309 (46%), Gaps = 20/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELL---- 71
            A    ++   +   +S+   D     DG+ + +   L+ +D+ + +  K+   +     
Sbjct: 3   LADLGKRINNAVNSALSNTEDDYVNSIDGMLKGISTALLEADVNIMLVSKVRNNIRSVLL 62

Query: 72  -TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP----HVILVVGVNGVGKTT 126
             K   + ++  +    V + +   L  L    +           ++I+ VG+ G GKTT
Sbjct: 63  DNKTTNRSMNNVQTKKLVQKTVFDELCGLVDCTDHKVFQPKKKATNIIMFVGLQGSGKTT 122

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL+   S  G KV L   DTFR+ A DQLK  A +    F  S   +D   +A +  
Sbjct: 123 SCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAVKARIPFYGSYTETDPVKVAGDGI 182

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            + + +K DV+I+DT+GR H    L   + ++  V+K      P+  + VLDA+ GQ A 
Sbjct: 183 AKFKKEKFDVIIVDTSGRHHQEEELFHEMVQISNVIK------PNQTIMVLDASIGQAAE 236

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +Q + F   +    +I+TKMDG A+GGG I  V     P+ F+G GE I+DLE F  K F
Sbjct: 237 QQSKAFKESSDFGAIILTKMDGHAKGGGAISAVAATNTPIAFIGTGEHIHDLEKFSPKSF 296

Query: 307 SAVITGCLD 315
            + + G  D
Sbjct: 297 ISKLLGIGD 305


>gi|111115526|ref|YP_710144.1| signal recognition particle protein [Borrelia afzelii PKo]
 gi|110890800|gb|ABH01968.1| signal recognition particle protein [Borrelia afzelii PKo]
          Length = 444

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S     K  I  +     ++D       E +++ L+ +D+ + V ++ +  ++ +   
Sbjct: 2   LESLGSNFKNFINYLSGKSTINDKNIAEAIEIIKNSLVDADVNLRVIRRFLNSIIEESKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V        + +  V++ + K L   +   +    ++   IL++G+ G GKTT   KL
Sbjct: 62  VKVLRGIDPKSQFIKIVNDNLVKFLGGKNYELSLHPVNKQSYILMLGLQGSGKTTTSAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S ++     KV+L A DTFR+AA++QLKI   +        E   D   +   + K A++
Sbjct: 122 SLRLKKENRKVLLVAADTFRAAAVEQLKILGSQIGVPVFSLEGEKDPIKIVKASMKFAES 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D +I+DT GRL   S+L+  I K+  +L+      P   + V+D+  GQ A+   + 
Sbjct: 182 EFFDSVIVDTRGRLEVESLLVEEIKKIKGILQ------PTETILVVDSMMGQVAVNIAKE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I +K D   RGG ++       +P+ F+GVGE   DL+ F  +  ++ I 
Sbjct: 236 FNENVGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKFVGVGEKPEDLDSFYPERIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|241957976|ref|XP_002421707.1| signal recognition particle (SRP) subunit, piutative [Candida
           dubliniensis CD36]
 gi|223645052|emb|CAX39646.1| signal recognition particle (SRP) subunit, piutative [Candida
           dubliniensis CD36]
          Length = 567

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 145/322 (45%), Gaps = 35/322 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV---REELEDLLIRSDIGVAVAQKIVEELLTK---- 73
            A    +L+  ++ + S    DD +    +++   L+ SD+ V +  K+   +  K    
Sbjct: 3   LADLGSRLRGALSSVESGS--DDEISQMIKDICSALLESDVNVKLVAKLRGNIKNKIEEA 60

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLS-------KPFNWDFSHRP-------------HV 113
             +K+ S       + ++I   L  L        KP     S +              HV
Sbjct: 61  NVSKETSAMNKRKKLQKIIFDELCALVDSNVEPPKPKKLSTSTKTINGKKVRVSKESSHV 120

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+ VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A + +  +  S 
Sbjct: 121 IMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSY 180

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +  D   +A+E  ++ + +K D++I+DT+GR      L   + ++   ++      P   
Sbjct: 181 LEPDPVKIAFEGVQKFKQEKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ------PSQT 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + V+D + GQ A  Q   F   +    +I+TKMDG A+GGG I  V   K P+ F+G GE
Sbjct: 235 VMVMDGSIGQAAESQARAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGE 294

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
            + DLE F    F + + G  D
Sbjct: 295 HVGDLEIFKPTTFISKLLGIGD 316


>gi|219851208|ref|YP_002465640.1| signal recognition particle protein Srp54 [Methanosphaerula
           palustris E1-9c]
 gi|219545467|gb|ACL15917.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 440

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  LK+ +  +     +D    + + ++L+  LI+SD+ V +   + + + T+   
Sbjct: 2   LDRLGSSLKDALKKLAGKTVVDRAAVEELVKDLQRALIQSDVNVKLVMNLSQAIKTRSLE 61

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++      + + V  ++++ L+ L  P   + +     IL+ G+ G GKTT   KL++  
Sbjct: 62  EEPLKGMGVREHVLRIVYQELVGLMGP-EVEVTLGQQTILMAGLQGSGKTTTTAKLARYF 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              GL+V +  GDTFR  A  Q+     + +         +DA  +  +  K     + +
Sbjct: 121 QRKGLRVAVICGDTFRPGAYQQISTLCQKINVPCFGDPNETDAVKIVTKGLKSV--GQAE 178

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           VLIIDT GR      L+  I  +  + K            V+DA  GQ A  Q   FH  
Sbjct: 179 VLIIDTQGRHALEEGLIQEIVDLNTLSKAT------HRWLVIDAALGQQASEQARRFHQA 232

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               G+I+TKMDGTA+GGG +  V   K  + F+G GE I DLE F    F + + G  D
Sbjct: 233 IDIDGVIITKMDGTAKGGGALSAVAETKSGIVFIGSGETIEDLERFDPDGFISRLLGMGD 292

Query: 316 Y 316
            
Sbjct: 293 L 293


>gi|297626602|ref|YP_003688365.1| Signal recognition particle receptor [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922367|emb|CBL56939.1| Signal recognition particle receptor [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 384

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 110/292 (37%), Positives = 168/292 (57%), Gaps = 5/292 (1%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           +   L   + D++S  ++DD   ++ E  LI SD+GV  A ++VE L        V+   
Sbjct: 94  SQNTLARALADLLSVDKIDDETWDDFESTLIASDLGVGPATELVENLRKALAVGGVADPA 153

Query: 84  VLYDVS--ELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
                   ELI  +   +S+  N D +   P V+++VGVNG GKTT +GKL + +   G 
Sbjct: 154 AARKALRGELIKIVGPDMSRDLNLDHAESVPAVVMMVGVNGTGKTTTVGKLGRMLVAQGR 213

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            V+  A DTFR+AA +QL  W +R     V  + G+D A++A+ A  +   + VDV+++D
Sbjct: 214 TVLFGAADTFRAAAAEQLTTWGERVGVRTVRGDEGADPASVAFNAVDEGITEGVDVVLVD 273

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRLH    LM  +GK+ RV+++  P   + VL V+DATTGQN L Q  +F  V   TG
Sbjct: 274 TAGRLHTKVGLMDELGKVKRVIEKKAP--VNEVLLVIDATTGQNGLTQARIFAEVVDITG 331

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +++TK+DG+A+GG ++ +     +PV F+G+GEG +DL PF A  F   + G
Sbjct: 332 IVLTKLDGSAKGGIVVQVQRELGVPVKFIGLGEGPDDLAPFDAAQFVDGLLG 383


>gi|3334345|sp|Q00179|SRP54_ASPNG RecName: Full=Signal recognition particle 54 kDa protein homolog
 gi|598061|gb|AAB04946.1| srpA [Aspergillus niger]
 gi|134078502|emb|CAK40424.1| signal recognition particle 54K protein homolog srpA-Aspergillus
           niger
 gi|1586559|prf||2204256A srpA gene
          Length = 534

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 139/307 (45%), Gaps = 17/307 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
                 ++   + D+  S  LD     D + +E+   L+ +D+ V + Q + + + +   
Sbjct: 3   LQDLGRRINAAVNDLTRSNNLDEKQAFDDMIKEICAALLSADVNVRLVQSLRKSIKSSVN 62

Query: 76  AKDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              +        + +      +  ++ P ++PF      R +VI+ VG+ G GKTT   K
Sbjct: 63  FASLPPAVNKKRLIQKAVFDELVSLVDPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTK 121

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + +
Sbjct: 122 LARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAAEGVAKFK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            ++ +++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q  
Sbjct: 182 KERFEIIIVDTSGRHKQEEELFTEMTQIQTAVT------PDQTILVLDSTIGQAAEAQSS 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A A    +I+TK DG A GGG I  V     P+ +LG GE + DLE F  K F   +
Sbjct: 236 AFKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIYLGTGEHLMDLERFEPKAFIQKL 295

Query: 311 TGCLDYG 317
            G  D  
Sbjct: 296 LGMGDMA 302


>gi|269120474|ref|YP_003308651.1| signal recognition particle protein [Sebaldella termitidis ATCC
           33386]
 gi|268614352|gb|ACZ08720.1| signal recognition particle protein [Sebaldella termitidis ATCC
           33386]
          Length = 444

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 139/304 (45%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   + ++    +    RL +        E+   L+ +D+   VA+  V ++  K   
Sbjct: 2   FNSLGDRFQDIFKKVSGQGRLTESNIKDALREVRLALLEADVNYGVAKNFVAKIRDKAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+ +  V++ + ++L   +       +  P V+++ G+ G GKTT   KL
Sbjct: 62  EEVIKGVNPAQQFVKIVNDELVEVLGGTNVTIAKS-AKPPTVVMLTGLQGAGKTTFSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            K +   G K  L   D +R AA  Q+K+  ++T       +  ++   +     ++A+ 
Sbjct: 121 GKYLKKKGEKPFLIGADVYRPAAKKQIKVLGEQTGISAFTIDESTNVLEICKAGMEKAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +    +I DTAGRLH +  LM  + ++           P  +L V+D  TGQ+A+   + 
Sbjct: 181 ENATYVIFDTAGRLHIDEQLMNELKEIKENFH------PDEILLVVDGMTGQDAVNVAKT 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     +G+++TK+DG  RGG  + I      P+ F+  GE ++D+  F     ++ I 
Sbjct: 235 FNEDLDISGVVLTKLDGDTRGGAALSIKEVSGKPIKFISDGEKLDDVSAFHPDRLASRIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|71893412|ref|YP_278858.1| signal recognition particle protein [Mycoplasma hyopneumoniae J]
 gi|71851539|gb|AAZ44147.1| signal recognition particle protein [Mycoplasma hyopneumoniae J]
          Length = 440

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 148/318 (46%), Gaps = 27/318 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               + +++  +  +  S  +++     +  E+   L+ +D+ + V +  + ++  +   
Sbjct: 2   LEFLTNRIQSSLKKLQKSITINESDLVEITREIRLALLEADVNLLVVKDFISKVKAQVLK 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++      Q  L  + + + ++L   SK  N  F+    +I++VG+ G GKTT   KL
Sbjct: 62  QGLTSKLNPQQEFLKILHQNLLEILGINSKSIN--FNKTLTIIMLVGLQGSGKTTTAAKL 119

Query: 132 SKKMSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +          K++L A DT+R AAIDQLK    +   +    E       +A EA   +
Sbjct: 120 AVFARQKKLAKKILLVACDTYRPAAIDQLKQLGKQVLIEVFYVE--KSPVQIAKEALIYS 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D++I DTAGRL  N  LM  + ++   +K      P  +L +LDA +GQ+ +   
Sbjct: 178 KNNDFDLVIFDTAGRLSINEELMNELSEIKENIK------PDQILFILDALSGQDIINVA 231

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F+     TG I+TK+D  AR G  + I    KIPV  +G GE I+ LE F     +  
Sbjct: 232 QIFNQKINLTGAIITKLDSNARAGAALSITHLLKIPVLLVGTGEKISALELFHPNRMADR 291

Query: 310 ITGCLD------YGEEKI 321
           I G  D        EE I
Sbjct: 292 ILGMGDVRSLLEQAEENI 309


>gi|167044950|gb|ABZ09615.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine crenarchaeote HF4000_APKG8G2]
          Length = 605

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 98/310 (31%), Positives = 155/310 (50%), Gaps = 20/310 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              KL   F+  +    E     ++ + +DD V  ELE  L+ SD+   V   I  +L T
Sbjct: 1   MFEKLGNAFSKAAKSFSEKD---LNEKDIDD-VLSELEISLLESDVATEVIDSIKSDLST 56

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMP----------LSKPFNWDFSHRPHVILVVGVNGV 122
           K     V+ + +   V + + + +            LS   +      P++IL VG+NG 
Sbjct: 57  KLVGSRVNKKEIEDFVKKSLTENISSMFDDAGSVDILSNIKSKTDPQDPYLILFVGINGT 116

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I K++  +    + V++AA DTFR+ AI+QL+   ++ +   +    GSD AA+A
Sbjct: 117 GKTTTIAKIANLLQKNKISVVVAAADTFRAGAIEQLREHINKLNLKLIAQNYGSDPAAVA 176

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A   A++ KVD ++ID+AGR+  N  LM  I K+ +V+       P   + V D+  G
Sbjct: 177 HDALLYAKSHKVDCVLIDSAGRMQTNKNLMEQIAKISKVVS------PDLKIFVGDSLAG 230

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            +A+ Q   FH      G I+TK D   RGG  + IV   K PV ++G G+G +DLE F 
Sbjct: 231 NDAVSQAREFHKHTTFDGAILTKSDADTRGGAALSIVAVTKKPVIYVGTGQGYDDLELFS 290

Query: 303 AKDFSAVITG 312
            + F   + G
Sbjct: 291 KEIFLETVFG 300


>gi|119498779|ref|XP_001266147.1| signal recognition particle protein SRP54 [Neosartorya fischeri
           NRRL 181]
 gi|119414311|gb|EAW24250.1| signal recognition particle protein SRP54 [Neosartorya fischeri
           NRRL 181]
          Length = 522

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 139/306 (45%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   + D+  S  LD    D + +E+   L+ +D+ V + Q + + + +    
Sbjct: 3   LQDLGRRINAAVNDLTRSSNLDEKAFDDMLKEICAALLSADVNVRLVQTLRKSIKSSVSF 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +        + +      +  ++ P ++PF      R +VI+ VG+ G GKTT   KL
Sbjct: 63  SSLPPAVNKKRLIQKAVFDELVALVDPHAEPFRPK-KGRSNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + 
Sbjct: 122 ARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ +V+I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   
Sbjct: 182 ERFEVIIVDTSGRHKQEEELFTEMTQIQNAVT------PDQTILVLDSTIGQAAEAQSAA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F   + 
Sbjct: 236 FKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHLMDLERFEPKAFVQKLL 295

Query: 312 GCLDYG 317
           G  D  
Sbjct: 296 GMGDMA 301


>gi|256784964|ref|ZP_05523395.1| docking protein [Streptomyces lividans TK24]
          Length = 391

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 176/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LDD   EE+ED L+ +D+GV   Q
Sbjct: 82  EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 141

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNG 121
           ++VE L  +           L   + E +  ++ P    +      + +P +++VVGVNG
Sbjct: 142 ELVERLRERVKVLGTRTPEELRTLLREELITLVGPDMDREVKTEPATSKPGIVMVVGVNG 201

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 202 TGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDPASV 261

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+ +    DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 262 AFDAVKEGKEMGSDVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAP--LDEVLLVLDATT 319

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF
Sbjct: 320 GQNGLIQARVFAEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADDLAPF 379

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 380 EPAAFVDALIG 390


>gi|331091061|ref|ZP_08339903.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330405283|gb|EGG84819.1| signal recognition particle-docking protein FtsY [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 314

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 121/309 (39%), Positives = 180/309 (58%), Gaps = 6/309 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  E   + ++L  G   T   +   +  I +   ++D+   EELE++LI  D+GV    
Sbjct: 1   MGEEKKGFFKRLVSGLTKTRDSIVSSMDSIFNGFSKIDEEFYEELEEVLIMGDLGVQATY 60

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGV 122
            ++++L  K   + +       +  +L+   +    +     ++F  R  V+LV+GVNGV
Sbjct: 61  AVLDDLRAKVKEQRIKEPM---ECKQLLIDSIKEQMRVGETAYEFEDRTSVVLVIGVNGV 117

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ K+     KV+LAA DTFR+AA +QL  WA R  A+ +  + G+D AA+ 
Sbjct: 118 GKTTTIGKLAGKLRANNKKVVLAAADTFRAAAGEQLVEWARRADAELIGGQDGADPAAIV 177

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A+A+  DVL+ DTAGRLHN   LM  + K+ RVL+R  P A    L VLD TTG
Sbjct: 178 YDAVAAAKARHADVLLCDTAGRLHNKKNLMEELKKINRVLEREYPEAYRETLVVLDGTTG 237

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QNAL Q   F+ VA  TG+++TKMDG+A+GG  + I    KIPV ++GVGE I+DL+ F 
Sbjct: 238 QNALAQAREFNEVADITGIVLTKMDGSAKGGIAVAIQSELKIPVKYIGVGESIDDLQKFD 297

Query: 303 AKDFSAVIT 311
           + +F   + 
Sbjct: 298 SDEFVNALF 306


>gi|216263608|ref|ZP_03435603.1| signal recognition particle protein [Borrelia afzelii ACA-1]
 gi|215980452|gb|EEC21273.1| signal recognition particle protein [Borrelia afzelii ACA-1]
          Length = 444

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 144/304 (47%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S     K  I  +     ++D       E +++ L+ +D+ + V ++ +  ++ +   
Sbjct: 2   LESLGSNFKNFINYLSGKSTINDKNIAAAIEIIKNSLVDADVNLRVIRRFLNSIIEESKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V        + +  V++ + K L   +   +    ++   IL++G+ G GKTT   KL
Sbjct: 62  VKVLRGIDPKSQFIKIVNDNLVKFLGGKNYELSLHPVNKQSYILMLGLQGSGKTTTSAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S ++     KV+L A DTFR+AA++QLKI   +        E   D   +   + K A++
Sbjct: 122 SLRLKKENRKVLLVAADTFRAAAVEQLKILGSQIGVPVFSLEGEKDPIKIVKASMKFAES 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D +I+DT GRL   S+L+  I K+  +L+      P   + V+D+  GQ A+   + 
Sbjct: 182 EFFDSVIVDTRGRLEVESLLVEEIKKIKGILQ------PTETILVVDSMMGQVAVNIAKE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I +K D   RGG ++       +P+ F+GVGE   DL+ F  +  ++ I 
Sbjct: 236 FNENVGLTGAIFSKFDSDTRGGAVLSFKSICAVPIKFVGVGEKPEDLDSFYPERIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|255949096|ref|XP_002565315.1| Pc22g13910 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592332|emb|CAP98679.1| Pc22g13910 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 522

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 135/303 (44%), Gaps = 14/303 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++   + D+  S  LD    D + +E+   L+ +D+ V +   + + +      
Sbjct: 3   LQDLGRRINSAVNDLTRSNNLDEKAFDDMLKEICAALLSADVNVRLVGTLRKSIKASVNF 62

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLS 132
             +        +  + +   L+ L  P    F  +    +VI+ VG+ G GKTT   KL+
Sbjct: 63  ASLPAAVNKKRLIQKTVFDELVKLVDPHADSFRPKKGRSNVIMFVGLQGAGKTTTCTKLA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + +
Sbjct: 123 RHYQTRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAEGVAKFKKE 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           + D++I+DT+GR      L   + ++   +       P   + VLD+T GQ A  Q   F
Sbjct: 183 RFDIIIVDTSGRHRQEEELFTEMTQIQTAVT------PDQTILVLDSTIGQAAEAQSAAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  + F   + G
Sbjct: 237 KATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPRAFVQKLLG 296

Query: 313 CLD 315
             D
Sbjct: 297 MGD 299


>gi|78776651|ref|YP_392966.1| Signal recognition particle protein [Sulfurimonas denitrificans DSM
           1251]
 gi|78497191|gb|ABB43731.1| signal recognition particle subunit FFH/SRP54 (srp54) [Sulfurimonas
           denitrificans DSM 1251]
          Length = 447

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 140/294 (47%), Gaps = 12/294 (4%)

Query: 28  LKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +  T+ I   R +D         +EL+  L+R+D+   V + ++ ++  +     +  
Sbjct: 5   LTDSFTNAIKKIRFNDDDKALTKALDELKKSLLRADVNHKVVKDLIFKVQIETKKNGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
            + L  +   ++++L           S  P VIL+ G+ G GKTT   KL+  + +   K
Sbjct: 65  DQFLEALRNALYELLEIGGNRGFVFASKPPTVILMTGLQGSGKTTTTAKLANYLKNKQKK 124

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           VM+ A D  R AA++QL+    +   +    E   +   +   A K+A +   DV++IDT
Sbjct: 125 VMVVAADLQRLAAVEQLRQLTQQVGVELYEDESTKNPVEVVTAALKKANSGIYDVVLIDT 184

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL  ++ LM  +  +           P  +  V D+ TGQ+A++    F    G  G+
Sbjct: 185 AGRLAIDNELMDELEAVK------YAANPSEIFYVADSMTGQDAIKTATAFKEKIGIDGV 238

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I++K DG ++GG  + +    ++P+ F+G GE I DLE F+ +     + G  D
Sbjct: 239 ILSKYDGDSKGGIALGLSSQVQVPLRFIGSGEKIEDLEVFLPERVVNRLMGFGD 292


>gi|34556528|ref|NP_906343.1| signal recognition particle protein [Wolinella succinogenes DSM
           1740]
 gi|34482242|emb|CAE09243.1| SIGNAL RECOGNITION PARTICLE PROTEIN [Wolinella succinogenes]
          Length = 300

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 110/304 (36%), Positives = 173/304 (56%), Gaps = 12/304 (3%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L K    T   +     ++++ +R     +E LE++LI SD+   + + ++E L  +   
Sbjct: 5   LKKTLGKTIEAI-----ELLAPKRASKISKELLEEILITSDMEYELVESLLEPLGEEVSQ 59

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +++ V    +   E  +  + P           RP + LV+GVNG GKTT I KL+    
Sbjct: 60  RELEVALHRFFRGESYYDRIAP------KRIEARPCITLVMGVNGAGKTTTIAKLTSLYQ 113

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             G  V+L AGDTFR+AAI+QLK+WA+R +A  V ++ G D +A+AY+      A+KVD 
Sbjct: 114 REGKSVLLGAGDTFRAAAIEQLKLWAERLNAGIVYTQQGHDPSAVAYDTIISGVARKVDH 173

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +IIDTAGRLHN + L   + K+ +   +    APH  L VLD T G +A+ Q ++FH   
Sbjct: 174 VIIDTAGRLHNQTNLKNELIKIAKTCDKAFSGAPHQKLLVLDGTQGSSAIDQAKIFHETL 233

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           G  G+I+TK+DGT++GG L  I+   ++P+ ++GVGE   DL PF  +++   + G + +
Sbjct: 234 GVDGIIITKLDGTSKGGALFSIMQRLRVPILYIGVGERAEDLIPFSEEEYVKTLLGAI-F 292

Query: 317 GEEK 320
            EEK
Sbjct: 293 DEEK 296


>gi|255322936|ref|ZP_05364074.1| signal recognition particle-docking protein FtsY [Campylobacter
           showae RM3277]
 gi|255299998|gb|EET79277.1| signal recognition particle-docking protein FtsY [Campylobacter
           showae RM3277]
          Length = 289

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 100/296 (33%), Positives = 159/296 (53%), Gaps = 17/296 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREE-LEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L KG   T       +  I SS+  D  + +E LE++L+ +DI   + ++++  L  +  
Sbjct: 5   LKKGLDKT-------LAAIRSSKPADKKISKEILEEILLEADIAYEIVEEVLYYLPPQNE 57

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            K         D+  L++   +  ++        +P V L++GVNG GKTT I KL+   
Sbjct: 58  VKK-------DDLKRLLNTYFIYENE--REAKVGKPFVELILGVNGAGKTTTIAKLANLY 108

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
            + G  V+L A DTFR+ AI+QL+ WA RT    V ++ G D +A+A++    A AK +D
Sbjct: 109 KNEGKSVILGACDTFRAGAIEQLRQWAIRTDVTIVATQQGHDPSAVAFDTISSAVAKNLD 168

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
            +I+DTAGRL N + L   + K++R+  R    APH  + +LD T G   L Q + F+ +
Sbjct: 169 NVILDTAGRLQNQTNLANELSKIVRIADRAYAGAPHRKILILDGTQGNAGLAQAKAFNDI 228

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
               G+I+TK+DGT +GG L  +    ++P+ ++G GE +NDL  F   DF   I 
Sbjct: 229 VSLDGVIITKLDGTPKGGALFGVARELELPILYIGTGETMNDLVKFDPHDFVDTIV 284


>gi|329947903|ref|ZP_08294835.1| signal recognition particle-docking protein FtsY [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328523527|gb|EGF50625.1| signal recognition particle-docking protein FtsY [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 389

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 113/323 (34%), Positives = 181/323 (56%), Gaps = 14/323 (4%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++  +        +++L    A       + +  ++S   L +   EE+ED L+ SD+G+
Sbjct: 70  VATLESPESIPGRMQRLRARLAGA-GGFGKAVLSVLSRGDLTEEDWEEIEDTLLTSDLGI 128

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRP------- 111
            V   +++EL T+      S    +  V  +EL+  +   L +  N D            
Sbjct: 129 EVTTSLMDELRTQAKVLGTSDPEAVRTVLRAELLKLVDPSLDRSLNLDRPTPADGAQGTP 188

Query: 112 -HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
              IL+VGVNG GKTT  GKL++ +      V+L A DTFR+AA +QL  W +R   D V
Sbjct: 189 AAAILMVGVNGTGKTTTCGKLARVLVAQDKTVVLGAADTFRAAAAEQLSTWGERVGVDVV 248

Query: 171 CSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
            SE  G+D A++AY+A ++A  ++ DV+++DTAGRL N + LM  +GK+ RV++++ P  
Sbjct: 249 RSEKEGADPASVAYDAARRAADQEADVVVVDTAGRLQNKAGLMDELGKIKRVMEKIAPVG 308

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              +L VLDATTGQN +RQ ++F    G TG+++TK+DGTA+GG ++ +     +PV  +
Sbjct: 309 --EILLVLDATTGQNGMRQAQVFSEAVGITGIVLTKLDGTAKGGIVVTVQRELGVPVKLV 366

Query: 290 GVGEGINDLEPFVAKDFSAVITG 312
           G+GEG +DL PF  + F   + G
Sbjct: 367 GLGEGADDLAPFDPEGFVDALLG 389


>gi|153954024|ref|YP_001394789.1| hypothetical protein CKL_1399 [Clostridium kluyveri DSM 555]
 gi|219854638|ref|YP_002471760.1| hypothetical protein CKR_1295 [Clostridium kluyveri NBRC 12016]
 gi|146346905|gb|EDK33441.1| FtsY [Clostridium kluyveri DSM 555]
 gi|219568362|dbj|BAH06346.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 303

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 129/303 (42%), Positives = 188/303 (62%), Gaps = 4/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
             +  KL  G   T     E ITD++S    +D+ + EELE++LI  DIGV     I+E 
Sbjct: 3   KGFFDKLKNGLEKTKNNFTEKITDLLSKAVNIDEELYEELEEILITCDIGVETTLYIIEN 62

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   + +    +L + + E+I  +L    +  + + S+ P +ILV+GVNGVGKTT I
Sbjct: 63  LKKKIKEEKIKDPSLLSNSLKEVILDILGD--EENSIEPSNTPEIILVIGVNGVGKTTSI 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GK+  ++ D G KV++AA DTFR+AAI+QL+IW++R   D +  + GSD AA+ ++A + 
Sbjct: 121 GKICCRLKDEGYKVVMAAADTFRAAAIEQLEIWSERAGVDIIKHQPGSDPAAVIFDAIQA 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           ++A+K DVL+ DTAGRLHN   LM  + K+ RV+ R    A      VLDATTGQNAL+Q
Sbjct: 181 SKARKADVLVCDTAGRLHNKKNLMEELAKINRVIDREHKEAYRQTFLVLDATTGQNALQQ 240

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F  V    G+++TK+DGTA+GG +I I  T  IPV  +GVGEGI DL+ F +++F  
Sbjct: 241 AKQFMEVCPIDGIVLTKLDGTAKGGIVISIKHTLNIPVKLIGVGEGIYDLQEFKSREFIE 300

Query: 309 VIT 311
            + 
Sbjct: 301 ALF 303


>gi|293363566|ref|ZP_06610322.1| signal recognition particle-docking protein FtsY [Mycoplasma
           alligatoris A21JP2]
 gi|292552915|gb|EFF41669.1| signal recognition particle-docking protein FtsY [Mycoplasma
           alligatoris A21JP2]
          Length = 350

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 107/300 (35%), Positives = 172/300 (57%), Gaps = 8/300 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + K   G + +S    + + ++ +   ++D+   +ELE++LI SDI   +  KI+E++  
Sbjct: 40  MEKYETGLSKSS-SFGKKLLELQNKYTKIDEDYFDELEEILIMSDINTELVFKIIEKIKK 98

Query: 73  KRYAKDVSVQRVLYDVSE----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +    ++   +++ ++      LI+     ++   +   + R +VI++VGVNG GKTT I
Sbjct: 99  EVKTNNIDDPKLIGEIVADQMFLIYTNKTIVNTTLDIK-NDRLNVIVMVGVNGSGKTTSI 157

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFK 187
            KL+ K    G KV++AA DTFR+ A++QL +WA R   D V   + G D +++ Y++  
Sbjct: 158 AKLAYKYKQLGKKVIIAAADTFRAGAVNQLDVWAQRIGVDIVKPDKEGQDPSSVVYKSLD 217

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A     D+LIIDTAGRL N   LM  + KM  V+++    APH  L VLD TTGQN L 
Sbjct: 218 VATKNDYDLLIIDTAGRLQNKINLMKELEKMFSVIRKFVESAPHEALLVLDGTTGQNGLS 277

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q  +F  V   +G+I+TKMDGT++GG ++ I     + V FLG+GE ++DL+ F    F 
Sbjct: 278 QARVFKEVCELSGIILTKMDGTSKGGIVLSIKDEFDLNVKFLGLGEKLDDLKEFDLDMFI 337


>gi|71893367|ref|YP_278813.1| cell division protein ftsY [Mycoplasma hyopneumoniae J]
 gi|71851494|gb|AAZ44102.1| cell division protein ftsY [Mycoplasma hyopneumoniae J]
          Length = 333

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 170/310 (54%), Gaps = 7/310 (2%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKI 66
            E  + + K   G   + L   + I  +     ++D+   EELE++LI SDI     + I
Sbjct: 16  QEKPANLDKYVAGLTKSRLSFFKQIVQLQKKHIKIDENFFEELEEILIMSDISPNFVRTI 75

Query: 67  VEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           ++ L  +    +++    +  ++ D    I+     ++   N     R +V L+ GVNG 
Sbjct: 76  IDSLKAEVRHHNLNNPDLIPEIIMDKMYTIYSNRSVVNTNLNIK-DGRINVFLISGVNGS 134

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAAL 181
           GKTT I K+++K    G KV++ A DTFR+AA++QL+IWA+R  A  +  E    D  ++
Sbjct: 135 GKTTSIAKVARKFIIEGKKVLIIAADTFRAAAVEQLEIWANRVGALILKPEANEKDPGSV 194

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            +     A  +K D+++IDTAGRL NN  LM  + K+ +++ +  P+APH  L V+DATT
Sbjct: 195 VFRGLDFAIKEKTDLVLIDTAGRLQNNVNLMQELKKINKIISQKVPNAPHESLLVIDATT 254

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN + Q   F  +   +G+I+TKMDGT++GG +  I     I V  +G+GE ++DL+PF
Sbjct: 255 GQNGVSQAANFAKITPVSGIILTKMDGTSKGGIIFSIKDQLDISVKLVGLGEAMDDLQPF 314

Query: 302 VAKDFSAVIT 311
               F   IT
Sbjct: 315 DLDLFIFAIT 324


>gi|257216394|emb|CAX82402.1| Signal recognition particle 54 kDa protein [Schistosoma japonicum]
          Length = 461

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 142/298 (47%), Gaps = 16/298 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   LI +D+ + + +++ E +      
Sbjct: 3   LAELGRKITNALRSLGNATIINEDVLNSLLKEICTALIEADVNIRLVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ ++++   V + +  ++ P  K +       P+VI++VG+ G GKTT   KL
Sbjct: 63  DEMAAGLNKRKIIQSAVFKELVHLVDPQVKAWQ-PARGSPNVIMLVGLQGCGKTTTATKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  +   DTFR+ A DQLK  A +    F  S   +D   +A +  ++   
Sbjct: 122 AYFYQRKGWKTCMICADTFRAGAFDQLKQNATKARIPFYGSYTETDPVVIARDGVQKFVE 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K +++I+DT+GR      L   + ++   ++      P  V+ VLDA+ GQ    Q   
Sbjct: 182 EKFEIIIVDTSGRHRQEDSLFEEMLQVSNAIE------PDHVIYVLDASIGQACEAQASA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           F A    + +I+TK+DG A+GGG +  V     P+ F+G GE + D E F  + F   
Sbjct: 236 FKAKVDVSSVIVTKLDGHAKGGGALSAVAATHSPITFIGTGEHVEDFEQFRVQPFVQK 293


>gi|329891279|ref|ZP_08269622.1| signal recognition particle protein [Brevundimonas diminuta ATCC
           11568]
 gi|328846580|gb|EGF96144.1| signal recognition particle protein [Brevundimonas diminuta ATCC
           11568]
          Length = 507

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 144/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L      I     L +  V E L +    L+ +D+ + V +  +    T    
Sbjct: 2   FEALNERLTGVFDRITGRGALSEKDVEEALREVRVALLEADVALPVVKDFIARAKTAATG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V        +V+  V + + +ML           +  P V+L+ G+ G GKTT   KL
Sbjct: 62  EEVIRAVKPADQVVKIVYDGLVEMLGGEEPVPLNTNATPPAVVLMAGLQGSGKTTTSAKL 121

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + ++      KVM+A+ DT R AA++QL     +     +    G  A  +   A + A+
Sbjct: 122 ALRLSKFDKKKVMMASLDTRRPAAMEQLATLGQQIEVATLPIVAGESAVQITRRALQSAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGR+  +  LM  + ++  + K      P   L V D+ TGQ+A+R   
Sbjct: 182 LQGFDVLILDTAGRITLDEGLMNEVAEVAEIAK------PVETLLVADSLTGQDAVRTAA 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH     TGL++T+ DG  RGG ++ +     +P+ +LG GE ++ L+ F A+  +  I
Sbjct: 236 AFHERLPLTGLVLTRADGDGRGGAMLSMRAVTGLPIKYLGAGEKVDALDVFDARRVAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGQGD 300


>gi|123967546|ref|YP_001008404.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. AS9601]
 gi|123197656|gb|ABM69297.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. AS9601]
          Length = 429

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 179/312 (57%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ + + W+ KL +G   T       + D +    L     ++LE LLIR+D+G+    
Sbjct: 115 QISIDEIDWLTKLRRGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDSTD 174

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVN 120
           K++  L TK   + V  +  +  + + +  ++    K    D       + +V L+VGVN
Sbjct: 175 KVISSLRTKLNEEVVGGEAGIKFLKKELKLIIDKPIKNSGTDLLVPQKGKLNVWLLVGVN 234

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+   S +  K ++AA DTFR+AA++QLK+W DR++ D + ++  + D A
Sbjct: 235 GVGKTTTLGKLAYLSSKSNYKTLIAAADTFRAAAVEQLKVWGDRSNVDVISNQSKNADPA 294

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+ + VD+L++DTAGRL   + LM  + K+ +++ +  P A    L VLDA
Sbjct: 295 AVVFDAINSAKKRNVDLLLVDTAGRLQTKNNLMDELAKIKKIIDKKVPDAIVESLLVLDA 354

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN L+Q + F   A  +G I+TK+DGT+RGG  + +     +P+ F+G GEGI DL 
Sbjct: 355 SQGQNGLKQAKSFAKSADLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIGAGEGIKDLR 414

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 415 PFNSYEFVEAML 426


>gi|190571419|ref|YP_001975777.1| signal recognition particle protein [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213018818|ref|ZP_03334626.1| signal recognition particle protein [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357691|emb|CAQ55140.1| signal recognition particle protein [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995769|gb|EEB56409.1| signal recognition particle protein [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 447

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S +  L    + +     + +        E+   LI +D+ + VA+K + ++  K   
Sbjct: 2   FKSLTESLNSVFSKLRGKSIISEDDFNLAMREIRIALIEADVSLEVAKKFINDIKDKVIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V + +  +L       N   +  P VI++VG+ G GKTT  GKL
Sbjct: 62  EKVIKSVSPSQMIIKIVQDNLVAVLGSEKSDLNL-AAKPPAVIMMVGLQGAGKTTTSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+     KVMLA+ D +R AA  QL++   +     +   I      +   A   A+ 
Sbjct: 121 ALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDVQTLPVVIDEKPVTITKRALAAAKN 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DVLI+DTAGRLH ++ +M  +  +  +       +P  V+ V DA  GQ+++   + 
Sbjct: 181 ENYDVLILDTAGRLHIDNNMMNELKAVKEI------ASPAEVILVADAMIGQDSVNIAKS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ + G TG+I+T++DG ARGG  + + +    P+ F+  GE ++DL+ F     +  I 
Sbjct: 235 FNEIIGVTGIILTRVDGDARGGAALSMKMITDCPIKFIACGEKLSDLDDFYPDRIAKRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 SMGD 298


>gi|326771791|ref|ZP_08231076.1| signal recognition particle-docking protein FtsY [Actinomyces
           viscosus C505]
 gi|326637924|gb|EGE38825.1| signal recognition particle-docking protein FtsY [Actinomyces
           viscosus C505]
          Length = 403

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 178/312 (57%), Gaps = 14/312 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             +++L    A       + +  ++S   L +   EE+ED L+ SD+G+ V   +++EL 
Sbjct: 95  GRMQRLRARLAGA-GGFGKAVLSVLSRGDLTEEDWEEIEDTLLTSDLGIEVTTSLMDELR 153

Query: 72  TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFS--------HRPHVILVVGVNG 121
           T+      S    +  V  +EL+  +   L +  N +               IL+VGVNG
Sbjct: 154 TQAKVLGTSDPEAVRTVLRAELLKLVDPSLDRSLNLERPTPAEGAQGKPAAAILMVGVNG 213

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT  GKL++ +      V+L A DTFR+AA +QL  W +R   D V SE  G+D A+
Sbjct: 214 TGKTTTCGKLARVLVAQDRTVVLGAADTFRAAAAEQLSTWGERVGVDVVRSEKEGADPAS 273

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY+A  +A A++ DV+++DTAGRL N + LM  +GK+ RV++++ P     +L VLDAT
Sbjct: 274 VAYDAACEAAAQEADVVVVDTAGRLQNKAGLMDELGKIRRVMEKIAPVG--EILLVLDAT 331

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN +RQ ++F    G TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL P
Sbjct: 332 TGQNGMRQAQVFSEAVGVTGIVLTKLDGTAKGGIVVTVQKELGVPVKLVGLGEGADDLAP 391

Query: 301 FVAKDFSAVITG 312
           F  + F   + G
Sbjct: 392 FDPEGFVDALLG 403


>gi|15834827|ref|NP_296586.1| signal recognition particle protein FtsY [Chlamydia muridarum Nigg]
 gi|270284993|ref|ZP_06194387.1| signal recognition particle protein FtsY [Chlamydia muridarum Nigg]
 gi|270289016|ref|ZP_06195318.1| signal recognition particle protein FtsY [Chlamydia muridarum
           Weiss]
 gi|301336390|ref|ZP_07224592.1| signal recognition particle protein FtsY [Chlamydia muridarum
           MopnTet14]
 gi|7190244|gb|AAF39079.1| signal recognition particle protein FtsY [Chlamydia muridarum Nigg]
          Length = 284

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 99/286 (34%), Positives = 144/286 (50%), Gaps = 10/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
               +  +   + L   + E  E LL   D G  + +    EL   ++  +         
Sbjct: 5   FGNKLRSLF-KKTLPSDLLEYAEALLYEGDFGPKLTEAFCNELRRHKHPDE-------RL 56

Query: 88  VSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           + ELI   L  +    P     S  PHV L++G NG GKTT + KL+         V++ 
Sbjct: 57  IKELIRSFLSDIIAKLPQKKSSSAHPHVTLILGTNGSGKTTTVAKLAHYCLSQNQTVLIV 116

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFRSA ++Q++ WAD     F+  + G DAAA+A++    A A+  D +IIDT+GRL
Sbjct: 117 ATDTFRSAGMEQMRCWADSLGCGFISGKPGGDAAAIAFDGISAAVARNYDQVIIDTSGRL 176

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H ++ L+  + K+  V  +  P APH  L  +DAT G N L QV++FH      GLI TK
Sbjct: 177 HTHTNLLKELQKIATVCNKAFPGAPHETLMTVDATLGSNTLSQVKLFHEAVPIDGLIFTK 236

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           ++G+A+GG L  I    KIP  F+G GE + D EPF    F   + 
Sbjct: 237 IEGSAKGGSLFRIADELKIPTRFVGYGETVYDFEPFSIDRFLDKLL 282


>gi|332295826|ref|YP_004437749.1| signal recognition particle-docking protein FtsY [Thermodesulfobium
           narugense DSM 14796]
 gi|332178929|gb|AEE14618.1| signal recognition particle-docking protein FtsY [Thermodesulfobium
           narugense DSM 14796]
          Length = 291

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 104/299 (34%), Positives = 167/299 (55%), Gaps = 13/299 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             K+ +    T        + ++    +D    +E+ +  +  D+G  +AQ+IV++   +
Sbjct: 4   FDKVKEALTKTR----RVFSSVVGMESID---WDEILEKFLLVDVGADIAQEIVKDAKKR 56

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
                ++   +   + E I   L P  KP  +  +  P V L++GVNG GKTT   KL+K
Sbjct: 57  W----LNAAPIEIALKEAIEDFL-PEGKPQLFFTNSHPCVWLLIGVNGSGKTTTCAKLAK 111

Query: 134 K-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             + +     +L A DTFR+AAIDQLKIW +R + D +  +  SD AA+ ++  K ++++
Sbjct: 112 YSIEEFKATPILIAADTFRAAAIDQLKIWGERLNIDVISQKENSDPAAVVFDGLKASKSR 171

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K + +IIDTAGRLH    LM  + K+ RV+ +     P  VL VLDA+TG NA++Q E+F
Sbjct: 172 KRNPIIIDTAGRLHTKDNLMEELKKIERVIGKEIEGEPSEVLLVLDASTGYNAVKQAEVF 231

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                 TG+I+TK+D +A+GG ++ I     IPV F+GVGEG++DL PF    ++  + 
Sbjct: 232 SQSLKVTGIILTKLDSSAKGGYVLNITKKFNIPVKFIGVGEGVDDLVPFDKVQYAEGLI 290


>gi|308271405|emb|CBX28013.1| Cell division protein ftsY homolog [uncultured Desulfobacterium
           sp.]
          Length = 283

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 122/285 (42%), Positives = 185/285 (64%), Gaps = 3/285 (1%)

Query: 28  LKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
           + +G+T+I S ++ +DD + EELE+LLI SDIGV  A  +++ +  K  +     Q    
Sbjct: 1   MSDGLTNIFSGKKVIDDDMLEELEELLITSDIGVQTASDLIKSISKKTSSISSPDQLNEI 60

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
              E++  +   +S+P     + +PHVILV+GVNGVGKTT IGKL+ K +    KV++ A
Sbjct: 61  IKQEILALLSDKVSEPKT--ITAKPHVILVIGVNGVGKTTTIGKLAAKYAAKNKKVLIVA 118

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+AA++QL IWA R  ++ V     +D AA+AY+  + A A+ +DV+IIDTAGRLH
Sbjct: 119 ADTFRAAAVEQLTIWAQRAGSEIVKQMHNADPAAVAYDGVEAALARNIDVVIIDTAGRLH 178

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
               LM  + K+ R + +  P APH +L VLDATTGQNAL Q ++F+   G TG+ +TK+
Sbjct: 179 TKINLMEELKKIKRSVSKRMPDAPHEILLVLDATTGQNALSQAKLFNDAIGVTGIALTKL 238

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           DGTA+GG +I +  + K+P+ ++G+GE I+DL+ F  ++F   + 
Sbjct: 239 DGTAKGGIVISVCNSFKLPIQYIGIGENIDDLQEFDPQNFVNALF 283


>gi|289523210|ref|ZP_06440064.1| signal recognition particle-docking protein FtsY [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503753|gb|EFD24917.1| signal recognition particle-docking protein FtsY [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 305

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 106/304 (34%), Positives = 173/304 (56%), Gaps = 4/304 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +++   L +   +       G+  + +  +++D+   + LE+ L+  D+GV +  ++V E
Sbjct: 2   MAFFDALKEKLQNVKKGWL-GLGSLFAPDKKIDESFWDGLEEQLLLGDVGVDLTDELVAE 60

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTV 127
           L  +    ++   R L +   +LI + L  +       +  ++P V+L+VGVNG GKTT 
Sbjct: 61  LRQEARKSNIKDTRDLKEKFVDLIVRKLEEIPGMGKPIETKNKPAVVLLVGVNGSGKTTT 120

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+ K++  G KV+LAA DT+R+AAIDQLK+W ++ +   V  ++G D AA+ Y+A +
Sbjct: 121 AAKLASKLASEGKKVLLAAADTYRAAAIDQLKVWGEKINVRVVAHDVGGDPAAVIYDAIE 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A A   D++I DTAGRLH    LM  + K+ RV++R  P  P   L VLDA  GQNA  
Sbjct: 181 SAVASDGDLVIADTAGRLHTKHNLMEELKKVKRVVERRLPDEPSESLLVLDAVMGQNAFY 240

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q E+F+     TG+I+ K D TA+GG ++ +     +P+ ++G+GEG  DLE F  + F 
Sbjct: 241 QAEVFNEALSLTGVILAKYDNTAKGGIILAVAQRMSLPIRYVGLGEGSEDLELFEPRSFV 300

Query: 308 AVIT 311
             + 
Sbjct: 301 EALL 304


>gi|284163534|ref|YP_003401813.1| signal recognition particle-docking protein FtsY [Haloterrigena
           turkmenica DSM 5511]
 gi|284013189|gb|ADB59140.1| signal recognition particle-docking protein FtsY [Haloterrigena
           turkmenica DSM 5511]
          Length = 529

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 95/301 (31%), Positives = 151/301 (50%), Gaps = 18/301 (5%)

Query: 23  STSLKLKEGITDIISSR-RLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           S+S         ++  +  +++   E    ELE  L+ SD+ + V  +I++ L  +   +
Sbjct: 231 SSSTGFGTKARSLVKGKFVIEEEDLEAPLHELEMALLSSDVEMGVTDEILDNLRDELIGE 290

Query: 78  DVSVQRVLYDVSEL-IHKMLMPLSKPFNWDF------SHRPHVILVVGVNGVGKTTVIGK 130
             S      DV E  +   +  +     +DF      + +P  I+  GVNGVGKTT I K
Sbjct: 291 TRSFTTSTGDVIEEALRDAIYDVISVGQFDFDERIAAAEKPVTIVFTGVNGVGKTTSIAK 350

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS+   + G   ++A GDT+R+ A +Q++  A+      +  E G D AA+ Y+  + A+
Sbjct: 351 LSRYFEERGYSTVMANGDTYRAGANEQIEQHAEALGTKLITHEQGGDPAAVLYDGVEYAE 410

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A  +DV++ DTAGRLH N  LM  + K+ RV+       P   L V +A  GQ+A+ +  
Sbjct: 411 ANDIDVVLGDTAGRLHTNEGLMDQLEKIDRVVG------PDMTLFVDEAVAGQDAVNRAR 464

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+  A   G I+TK D  + GG  I I      P+ FLGVG+G +DLEPF  ++    +
Sbjct: 465 EFNEAAEIDGAILTKADADSNGGAAISIAHVTGKPILFLGVGQGYDDLEPFDPEEMVDRL 524

Query: 311 T 311
            
Sbjct: 525 L 525


>gi|225630810|ref|YP_002727601.1| Signal recognition particle GTPase [Wolbachia sp. wRi]
 gi|225592791|gb|ACN95810.1| Signal recognition particle GTPase [Wolbachia sp. wRi]
          Length = 447

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S +  L    + +     + +        E+   LI +D+ + VA+K + ++  K   
Sbjct: 2   FKSLTESLNSVFSKLRGKSIISEDDFNLAMREIRIALIEADVSLEVAKKFINDIKDKVIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V + +  +L       N      P VI++VG+ G GKTT  GKL
Sbjct: 62  EKVIKSVSPAQMIIKIVQDNLVAVLGSEKSDLNLAV-KPPAVIMMVGLQGAGKTTTSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+     KVMLA+ D +R AA  QL++   +     +   I      +   A   A+ 
Sbjct: 121 ALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDVQTLPVVIDEKPITITKRALAAAKN 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLI+DTAGRLH ++ +M  +  +  +       +P  V+ V DA  GQ+A+   + 
Sbjct: 181 DNYDVLILDTAGRLHIDNNMMNELKAVKEI------ASPAEVILVADAMIGQDAVNIAKS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ V G TG+I+T++DG ARGG  + + +    P+ F+  GE ++DL+ F     +  I 
Sbjct: 235 FNEVIGVTGIILTRVDGDARGGAALSMKMIADCPIKFIACGEKLSDLDDFYPDRIAKRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 SMGD 298


>gi|161508236|ref|YP_001577669.1| cell division protein [Lactobacillus helveticus DPC 4571]
 gi|260101399|ref|ZP_05751636.1| signal recognition particle-docking protein FtsY [Lactobacillus
           helveticus DSM 20075]
 gi|160349225|gb|ABX27899.1| Cell division protein [Lactobacillus helveticus DPC 4571]
 gi|260084739|gb|EEW68859.1| signal recognition particle-docking protein FtsY [Lactobacillus
           helveticus DSM 20075]
 gi|328465666|gb|EGF36883.1| signal recognition particle-docking protein FtsY [Lactobacillus
           helveticus MTCC 5463]
          Length = 430

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 107/295 (36%), Positives = 166/295 (56%), Gaps = 6/295 (2%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   T+      +    +  R +D+   ++LEDLLI SD+G   A+++ +EL  +   +
Sbjct: 128 KGLEKTNKGFGARLNAFFAKFRTVDEDFFDDLEDLLIESDVGYETAEQLTDELREEAKLQ 187

Query: 78  DVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +   +  L  V      +L  K      +   +    +P+V L VGVNG GKTT IGKL+
Sbjct: 188 NAKSRDDLKKVIVEKLVDLYDKDGNSEDEKLIYHPEDKPNVYLFVGVNGAGKTTTIGKLA 247

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K+  D G  V++AA DTFR+ A++QL  W  R     V  +  +D A++ Y+A ++A  +
Sbjct: 248 KRFKDEGKSVIMAAADTFRAGAVEQLVEWGKRVDVPVVTGKEKADPASVVYDATERAIKE 307

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D L++DTAGRL N   LMA + K+ R++K+L P  P   L VLD +TGQNAL Q + F
Sbjct: 308 NADYLLVDTAGRLQNKKNLMAELEKIQRIIKKLLPDQPTETLLVLDGSTGQNALLQAKDF 367

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 TGL++TK+DG+++GG ++ I     +PV  +G+GE   DL  F A +++
Sbjct: 368 DKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVKLVGLGEKAEDLADFDAANYA 422


>gi|83319981|ref|YP_424520.1| signal recognition particle protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283867|gb|ABC01799.1| signal recognition particle protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 447

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 147/302 (48%), Gaps = 19/302 (6%)

Query: 24  TSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            S ++++ I   + +  L++       +E+   L+ +D+ +   ++I+  +  K     +
Sbjct: 7   LSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEATKEIISNVKQKALGGYI 66

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                + Q+++  V E +  +L   + P   + + +P V+++VG+ G GKTT   KL+  
Sbjct: 67  FEGANAHQQMIKIVHEELVNILGKENAPL--ELNKKPSVVMMVGLQGSGKTTTANKLAYL 124

Query: 135 MSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           ++    K +L  G D +R  AI+QL     +T+          D    A EA + AQ   
Sbjct: 125 LNKKNKKKVLLVGLDIYRPGAIEQLIQLGQKTNTQVFEKG-KQDPVLTAQEALEYAQENN 183

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DV+I+DTAGRL  + +LM  +  + +        +P  +L V+D  +GQ  +     F+
Sbjct: 184 FDVVILDTAGRLQVDQVLMTELDNLKK------KTSPSEILLVVDGMSGQEIINVTNEFN 237

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                +G+++TK+DG ARGG  + I    K+P+ F+G GEG N L  F  K  +  + G 
Sbjct: 238 NKLKLSGVVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGM 297

Query: 314 LD 315
            D
Sbjct: 298 GD 299


>gi|313665439|ref|YP_004047310.1| signal recognition particle protein [Mycoplasma leachii PG50]
 gi|312949459|gb|ADR24055.1| signal recognition particle protein [Mycoplasma leachii PG50]
          Length = 447

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 148/302 (49%), Gaps = 19/302 (6%)

Query: 24  TSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            S ++++ I   + +  L++       +E+   L+ +D+ +   ++I+  +  K     +
Sbjct: 7   LSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEATKEIINNVKQKALGGYI 66

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                + Q+++  V E +  +L   + P   + + +P V+++VG+ G GKTT   KL+  
Sbjct: 67  FEGANAHQQMIKIVHEELVNILGKENAPL--ELNKKPSVVMMVGLQGSGKTTTANKLAYL 124

Query: 135 MSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           ++    K +L  G D +R  AI+QL     +T+          D    A EA + AQ   
Sbjct: 125 LNKKNKKKVLLVGLDIYRPGAIEQLIQLGQKTNTQVFEKG-KQDPILTAQEALEYAQENN 183

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DV+I+DTAGRL  + +LM  +  + +        +P  +L V+D  +GQ  +     F+
Sbjct: 184 FDVVILDTAGRLQVDQVLMTELDNLKK------KTSPSEILLVVDGMSGQEIINVTNEFN 237

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +    +G+++TK+DG ARGG  + I    K+P+ F+G GEG N L  F  K  +  + G 
Sbjct: 238 SKLKLSGVVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGM 297

Query: 314 LD 315
            D
Sbjct: 298 GD 299


>gi|18314019|ref|NP_560686.1| signal recognition particle [Pyrobaculum aerophilum str. IM2]
 gi|28380154|sp|Q8ZT95|SRP54_PYRAE RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|18161596|gb|AAL64868.1| signal recognition particle (srp54 family), putative [Pyrobaculum
           aerophilum str. IM2]
          Length = 433

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 147/303 (48%), Gaps = 18/303 (5%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVE----ELLTKRY 75
            +    + +  I     +D+   +EL    +  L+++D+ + + +   E     +  ++ 
Sbjct: 4   LTEIFGKLLEKIRGVDYIDEATLQELSREIQRTLLKADVPLDLVKSFTENAVKRIKEEKP 63

Query: 76  AKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
              +  +  L Y + E + K+L    +P  +  + +P+++L++GV G GKTT   KL+K 
Sbjct: 64  PAGIPPREYLIYVLYEELVKLLGG-EQPAEFKPTKKPYIVLLLGVEGSGKTTTAAKLAKY 122

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           ++  G KV L   DT R AA DQL+  A++    F     G DA  +A    +  +   +
Sbjct: 123 LAKRGYKVGLVETDTIRPAAFDQLRQLAEKIGVPFYGERDGKDAVEIAKRGVQNFK--NM 180

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+I+DTAGR  N   L      +  V    D  +P  V+ V+DAT G+ A  Q E F  
Sbjct: 181 DVIIVDTAGRHRNEEAL------LKEVRAIYDAVSPDEVVLVIDATVGKMAAAQAEAFMK 234

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
                 +I+TKMD TARGGG +  V      V F+GVGE +++ E F  + F A + G  
Sbjct: 235 YLPIHSVIITKMDSTARGGGALAAVAKTGAKVKFIGVGEDVDEFEQFSPRKFVARVLGMG 294

Query: 315 DYG 317
           D  
Sbjct: 295 DLD 297


>gi|57238078|ref|YP_179327.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni RM1221]
 gi|86152890|ref|ZP_01071095.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|121613201|ref|YP_001000881.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167005791|ref|ZP_02271549.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|57166882|gb|AAW35661.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni RM1221]
 gi|85843775|gb|EAQ60985.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|87249299|gb|EAQ72260.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|315058638|gb|ADT72967.1| Signal recognition particle receptor protein FtsY [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 288

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 159/299 (53%), Gaps = 16/299 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
                 KG A T   +     +   ++++   + EE+   L+ +D+   + ++I+  L  
Sbjct: 1   MFNFFKKGLAKTLENIVGVKGE---NKKITKDLLEEI---LLEADVSYEIVEEIIYYLPP 54

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +   K         D+  ++    +   K  N +   +P V L++GVNG GKTT I KL+
Sbjct: 55  QNEVKK-------EDLKRVMGSYFLYEKKETNQE---KPFVELILGVNGAGKTTSIAKLA 104

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
               +   KV+L A DTFR+ AI+QLK+WA +   D V +  G D +A+A++   +A+AK
Sbjct: 105 YLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISKAKAK 164

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D +IIDTAGRL N   L   + K++R+  +    APH  + VLD T G   + Q + F
Sbjct: 165 DFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAF 224

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +    G+I+TK+DGTA+GG L  I    ++P++++GVGE + DL+ F A  +   + 
Sbjct: 225 NELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNANAYLDTLL 283


>gi|29840542|ref|NP_829648.1| signal recognition particle-docking protein FtsY [Chlamydophila
           caviae GPIC]
 gi|29834891|gb|AAP05526.1| signal recognition particle-docking protein FtsY [Chlamydophila
           caviae GPIC]
          Length = 285

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 95/284 (33%), Positives = 147/284 (51%), Gaps = 5/284 (1%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
               I  +   + L   + E  E L   +D G  + +++   L   R   + +V+ ++  
Sbjct: 5   FSSKIQSLF-KKSLSTDLLEFTESLFYEADFGSDLTEELCSRLRKCRKPDESTVKDLVLS 63

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           +       L     P        P V L++G NG GKTT + KL+        KVM+ A 
Sbjct: 64  LLRETIANLPHTELPQT----EGPIVSLMLGTNGSGKTTTVAKLAHHYQSQSKKVMIVAT 119

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFRSA +DQ++ WA++    FV  + G D AA+AY+    A ++  D ++IDT+GRLH 
Sbjct: 120 DTFRSAGMDQMRCWAEKLGCGFVAGKPGGDPAAIAYDGIASAISRGYDRVLIDTSGRLHT 179

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           ++ L+  + K++ V  ++ P +PH  L  +DAT G N + QV +FH     +GLI+TK+D
Sbjct: 180 HTNLLNELSKIVSVCNKVHPGSPHERLMTIDATLGSNVIEQVRVFHDTIPLSGLILTKVD 239

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G+A+GG L  +    KIP  F+G GE I DLE F    F   + 
Sbjct: 240 GSAKGGTLFRVAKQLKIPTKFVGYGELIGDLEEFQIDRFLEKLF 283


>gi|302761692|ref|XP_002964268.1| hypothetical protein SELMODRAFT_82182 [Selaginella moellendorffii]
 gi|300167997|gb|EFJ34601.1| hypothetical protein SELMODRAFT_82182 [Selaginella moellendorffii]
          Length = 467

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 80/304 (26%), Positives = 135/304 (44%), Gaps = 14/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT--KR 74
                 ++   I  + ++  +DD        E+   L+++D+   + Q +   +    ++
Sbjct: 3   LGELGSRISGAIQRLNTATVIDDKALTICVNEITHALLQADVQFKLVQALSSNVRKSVEK 62

Query: 75  YAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            A     + ++   V   +  ML    KP       R +V+++VG+ G GKTT   K + 
Sbjct: 63  LAAGHDKRHIIQKAVFHELRAMLDA-GKPSFTPTKGRTNVVMLVGLQGCGKTTTCTKYAL 121

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G    L   DTFR+ A DQLK  A +    F  S   +D   +A E  ++    K
Sbjct: 122 HYRKKGFNPALVCADTFRAGAFDQLKQNATKVKIPFYGSYTETDPVVIAQEGVRKFADAK 181

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D++I+DT+GR    + L   + ++           P  ++ V+D++ GQ A  Q   F 
Sbjct: 182 HDLIILDTSGRHKQENALFEEMRQLAAATN------PDLIIFVMDSSIGQAANDQALAFR 235

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             A    +I+TK+DG A+GGG +  V   K P+ FLG GE  +  E F +K F + + G 
Sbjct: 236 ESAKVGAVIITKIDGHAKGGGALSAVAATKSPIIFLGTGEKADAFETFESKAFVSRLLGM 295

Query: 314 LDYG 317
            D  
Sbjct: 296 GDIA 299


>gi|54019977|ref|YP_115523.1| cell division protein ftsY [Mycoplasma hyopneumoniae 232]
 gi|72080350|ref|YP_287408.1| cell division protein ftsY [Mycoplasma hyopneumoniae 7448]
 gi|53987150|gb|AAV27351.1| cell division protein [Mycoplasma hyopneumoniae 232]
 gi|71913474|gb|AAZ53385.1| cell division protein ftsY [Mycoplasma hyopneumoniae 7448]
          Length = 333

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 170/310 (54%), Gaps = 7/310 (2%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKI 66
            E  + + K   G   + L   + I  +     ++D+   EELE++LI SDI     + I
Sbjct: 16  QEKPANLDKYVAGLTKSRLSFFKQIVQLQKKHIKIDENFFEELEEILIMSDISPNFVRTI 75

Query: 67  VEELLTKRYAKDVS----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           ++ L  +    +++    +  ++ D    I+     ++   N     R +V L+ GVNG 
Sbjct: 76  IDSLKAEVRHHNLNNPDLIPEIIMDKMYTIYSNRSVVNTNLNIK-DGRINVFLISGVNGS 134

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAAL 181
           GKTT I K+++K    G KV++ A DTFR+AA++QL+IWA+R  A  +  E    D  ++
Sbjct: 135 GKTTSIAKVARKFIIEGKKVLIIAADTFRAAAVEQLEIWANRVGALILKPEANEKDPGSV 194

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            +     A  +K D+++IDTAGRL NN  LM  + K+ +++ +  P+APH  L V+DATT
Sbjct: 195 VFRGLDFAIKEKTDLVLIDTAGRLQNNVNLMQELKKINKIISQKVPNAPHESLLVIDATT 254

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN + Q   F  +   +G+I+TKMDGT++GG +  I     I V  +G+GE ++DL+PF
Sbjct: 255 GQNGVSQAANFAKITPVSGIILTKMDGTSKGGIIFSIKDQLDISVKLVGLGEAMDDLQPF 314

Query: 302 VAKDFSAVIT 311
               F   IT
Sbjct: 315 DLDLFIFAIT 324


>gi|86150380|ref|ZP_01068606.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|148926209|ref|ZP_01809894.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|205356228|ref|ZP_03222994.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|85839205|gb|EAQ56468.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|145845380|gb|EDK22473.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|205345833|gb|EDZ32470.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 288

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 160/299 (53%), Gaps = 16/299 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
                 KG A T   +  GI     ++++   + EE+   L+ +D+   + ++I+  L  
Sbjct: 1   MFNFFKKGLAKTLENIV-GIKG--ENKKITKDLLEEI---LLEADVSYEIVEEIIYYLPP 54

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +   K         D+  ++    +   K  N +   +P V L++GVNG GKTT I KL+
Sbjct: 55  QNEVKK-------EDLKRVMGSYFLYEKKETNQE---KPFVELILGVNGAGKTTSIAKLA 104

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
               +   KV+L A DTFR+ AI+QLK+WA +   D V +  G D +A+A++   +A+AK
Sbjct: 105 YLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISKAKAK 164

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D +IIDTAGRL N   L   + K++R+  +    APH  + VLD T G   + Q + F
Sbjct: 165 DFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAF 224

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +    G+I+TK+DGTA+GG L  I    ++P++++GVGE + DL+ F A  +   + 
Sbjct: 225 NELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLL 283


>gi|288930433|ref|YP_003434493.1| signal recognition particle-docking protein FtsY [Ferroglobus
           placidus DSM 10642]
 gi|288892681|gb|ADC64218.1| signal recognition particle-docking protein FtsY [Ferroglobus
           placidus DSM 10642]
          Length = 326

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 98/331 (29%), Positives = 158/331 (47%), Gaps = 38/331 (11%)

Query: 13  WIRKLTKGFASTSLK----------------LKEGITDIISSRRL--DDGVRE----ELE 50
             + L +  +S   K                LKE +  +I  R +  D+G  E    ELE
Sbjct: 1   MFKALKEKLSSFRKKVDEEAGEEIAKKEKIGLKEKLATLILEREIIIDEGKLEKVLPELE 60

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS- 108
            +L+ SD+   V  +I + L  +   +   +   L   V + + ++L  +     +DF  
Sbjct: 61  MILLESDVAFEVVDEISKRLKERLVGRRKGIGESLSSLVLKELKEILREILSKNYFDFDE 120

Query: 109 --------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                    +P  I+ VGVNG GKTT I KL+ ++  +G  V+LAAGDTFR+ AI+QL+ 
Sbjct: 121 FVEKKLEEKKPLHIIFVGVNGTGKTTTIAKLAYRLLKSGKSVVLAAGDTFRAGAIEQLEE 180

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
              +     +  + G+D AA+ Y+A K A++K +DV++ DTAGR+H    L+  + K+ R
Sbjct: 181 HGKKLGVRVIKHKPGADPAAVIYDAIKHAESKGIDVVLSDTAGRMHTKKNLIDQLEKIKR 240

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V        P   + V ++  G +A+ +  MF+   G  G I+TK+D   +GG  I I  
Sbjct: 241 VTN------PDLTIFVDESLAGNDAVERARMFNEAIGIDGSILTKIDADPKGGCAISISY 294

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             + P+ F+G G+   DL  F        I 
Sbjct: 295 VTEKPILFVGTGQNYEDLVKFDPDWLIKRIF 325


>gi|190347110|gb|EDK39324.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 560

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 142/321 (44%), Gaps = 32/321 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELL---TKRYA 76
            A    +L++ ++ + S    +   + +++   L+ SD+ V +  K+ + +     K   
Sbjct: 17  LAELGSRLRDALSGVSSGSEEEIQAMIKDICTALLESDVNVKLVAKLRDNIKAKVKKEVR 76

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP----------------------HVI 114
            D +       + +++   L  L          +                       H+I
Sbjct: 77  NDEAAANKRKKLQKIVFDELCALVDSHEEPPKPKKLSQQAKQKSIRGKKITKNNAESHII 136

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A ++S  +  S +
Sbjct: 137 MFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNATKSSIPYYGSYL 196

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            +D   +A+E   + + +K D++I+DT+GR      L   + ++   ++      P   +
Sbjct: 197 ETDPVKVAHEGVVKFRKEKFDIIIVDTSGRHKQEQSLFDEMVQISEAVQ------PTQTI 250

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+D + GQ A  Q   F   +    +I+TKMDG A+GGG I  V   + P+ F+G GE 
Sbjct: 251 MVMDGSIGQAAESQARAFKETSDFGSIILTKMDGHAKGGGAISAVAATQTPIVFIGTGEH 310

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           + DLE F    F + + G  D
Sbjct: 311 VGDLETFRPSAFISKLLGIGD 331


>gi|20145859|emb|CAD29627.1| signal recognition particle receptor [Streptomyces lividans]
          Length = 412

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 175/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LDD   EE+ED L+ +D+GV   Q
Sbjct: 103 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 162

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNG 121
           ++VE L  +           L   + E +  ++ P    +      + +P +++VVGVNG
Sbjct: 163 ELVERLRERVKVLGTRTPEELRTLLREELITLVGPDMDREVKTEPATSKPGIVMVVGVNG 222

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQ + W +R  A  V    G D A++
Sbjct: 223 TGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQPQTWGERVGAHTVRGPEGGDPASV 282

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+ +    DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 283 AFDAVKEGKEMGSDVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAP--VDEVLLVLDATT 340

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF
Sbjct: 341 GQNGLIQARVFAEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADDLAPF 400

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 401 EPAAFVDALIG 411


>gi|331223009|ref|XP_003324178.1| signal recognition particle protein [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309303168|gb|EFP79759.1| signal recognition particle protein [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 635

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 142/324 (43%), Gaps = 32/324 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    K+    +++  +  +DD     + + +   L+ SD+ V +   +   + +K   
Sbjct: 3   LADLGKKINAAFSELQRTPLIDDKALDLLLKGISAALLSSDVNVTLVANLRNRVKSKLSP 62

Query: 77  K----DVSVQRVLYDVSELIHKMLMPLSKPFNW------------------DFSHRPHVI 114
           +      S  +    V + +   L+ L  P                         +P+VI
Sbjct: 63  QLEKLIQSPAKQKQLVHKTVFDELVALVSPTGSASDHASSSSRTTEYTPWQPKKGKPNVI 122

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F  S  
Sbjct: 123 MFVGLQGSGKTTSCTKLAVYYRRKGFKTALVCADTFRAGAFDQLKQNATKAKIPFYGSHT 182

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            +D  A++     + + ++ +V+I+DT+GR    + L   + ++   +       P+  +
Sbjct: 183 ETDPIAISTAGVTRFKRERFEVIIVDTSGRHRQETELFEEMKQISAGVT------PNLTI 236

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLD   GQ A  Q   F   A    +I+TKMDG A+GGG I  V   + P+ F+G GE 
Sbjct: 237 MVLDGAIGQAAEAQTRAFKEAADFGAIIVTKMDGHAKGGGAISAVAAAQTPIMFIGTGEH 296

Query: 295 INDLEPFVAKDFSAVITGCLDYGE 318
           ++DLE F  + F + + G  D GE
Sbjct: 297 LHDLERFAPEPFISKLLGMGDIGE 320


>gi|88596279|ref|ZP_01099516.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|157415469|ref|YP_001482725.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|88191120|gb|EAQ95092.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|157386433|gb|ABV52748.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|284926430|gb|ADC28782.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|307748111|gb|ADN91381.1| Signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315932351|gb|EFV11294.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 288

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 159/299 (53%), Gaps = 16/299 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
                 KG A T   +     +   ++++   + EE+   L+ +D+   + ++I+  L  
Sbjct: 1   MFNFFKKGLAKTLENIVGVKGE---NKKITKDLLEEI---LLEADVSYEIVEEIIYYLPP 54

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +   K         D+  ++    +   K  N +   +P V L++GVNG GKTT I KL+
Sbjct: 55  QNEVKK-------EDLKRVMGSYFLYEKKETNQE---KPFVELILGVNGAGKTTSIAKLA 104

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
               +   KV+L A DTFR+ AI+QLK+WA +   D V +  G D +A+A++   +A+AK
Sbjct: 105 YLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISKAKAK 164

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D +IIDTAGRL N   L   + K++R+  +    APH  + VLD T G   + Q + F
Sbjct: 165 DFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAF 224

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +    G+I+TK+DGTA+GG L  I    ++P++++GVGE + DL+ F A  +   + 
Sbjct: 225 NELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLL 283


>gi|62185365|ref|YP_220150.1| putative cell division protein [Chlamydophila abortus S26/3]
 gi|62148432|emb|CAH64200.1| putative cell division protein [Chlamydophila abortus S26/3]
          Length = 286

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 101/286 (35%), Positives = 153/286 (53%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
               I  +   + L   + E  E L   +D G  + +++   L   R   D S  + L  
Sbjct: 5   FSSKIQSLF-KKTLSPDLLEFTESLFYEADFGSDLTEELCSRLRKCRKP-DASTVKDL-- 60

Query: 88  VSELIHKMLM--PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           VS L+ + L   PL++P        P V L++G NG GKTT + KL+        KVM+ 
Sbjct: 61  VSSLLRETLDSLPLAEPCQGPA---PIVSLILGSNGSGKTTTVAKLAHYYLSRSEKVMIV 117

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFRSA ++Q++ WA++    FV  + G D AA+AY+    A ++  D ++IDT+GRL
Sbjct: 118 ATDTFRSAGMNQMRCWAEKLGCGFVSGKPGGDPAAIAYDGIASAMSRGYDRVLIDTSGRL 177

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H ++ L+  + K++ V  ++ P +PH  L  +DAT G N + QV +FH     +GLI+TK
Sbjct: 178 HTHTNLLNELSKIVSVCNKVHPGSPHERLMTIDATLGGNVIEQVRVFHDTVPLSGLILTK 237

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +DG+A+GG L  +    KIP  F+G GE I DLE F    F   + 
Sbjct: 238 VDGSAKGGTLFRVAKQLKIPTKFVGYGELIGDLEEFHIDRFLEKLF 283


>gi|312879511|ref|ZP_07739311.1| signal recognition particle subunit FFH/SRP54 (srp54) [Aminomonas
           paucivorans DSM 12260]
 gi|310782802|gb|EFQ23200.1| signal recognition particle subunit FFH/SRP54 (srp54) [Aminomonas
           paucivorans DSM 12260]
          Length = 448

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   + ++    +    RL +        E+   L+ +D+   V + + + +  +   
Sbjct: 2   FDALKDRFEKIFGTLRGKGRLSEEDVNLALREVRRALLEADVHYKVVKDLTDRIRERATG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +DV       Q+VL  V E +  ++    KP        P V L+ G+ G GKTT   K+
Sbjct: 62  QDVLASITPAQQVLTIVFEELVAVMGSEPKPLTIS-PKPPTVYLMAGLQGSGKTTSTVKI 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAALAYEAFKQAQ 190
           + ++  +  K ++ A D  R AA++QL++ A++    F   + G  D   +A  + K A+
Sbjct: 121 ASRLKGS-HKPLVVACDLQRPAAVEQLRVLAEKAGVAFYGPQAGQTDPVQVARGSLKYAE 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++++DTAGRL  +  LM  + ++   +       P  VL V+DA TGQ A+   E
Sbjct: 180 DHLADLILLDTAGRLQIDEALMEELVRIKEAVP------PQEVLLVVDAMTGQEAVTVAE 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FHA  G TG+++TK+DG ARGG  + I      PV   G+GE I DLE F A+     I
Sbjct: 234 SFHAKLGLTGVVLTKLDGDARGGAALAIGAATGAPVKLAGMGEKIEDLEVFDARRMGQRI 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|23008862|ref|ZP_00050130.1| COG0552: Signal recognition particle GTPase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 218

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 121/212 (57%), Positives = 155/212 (73%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           P   D + +P+VIL VGVNG GKTT IGKLS K    G  VMLAAGDTFR+ AI+QL++W
Sbjct: 4   PITIDSAKKPYVILTVGVNGAGKTTTIGKLSLKFKAEGRSVMLAAGDTFRAPAIEQLRVW 63

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            +RT    +    GSDAA LA++AFK+A+    DVL+IDTAGRL N + LMA + K++RV
Sbjct: 64  GERTGTPVISRAQGSDAAGLAFDAFKEARENGTDVLLIDTAGRLQNKAGLMAELEKIVRV 123

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +++LDP APH+ L VLDAT GQNAL QVE+F   A  +GL+MTK+DGTARGG L+ +   
Sbjct: 124 IRKLDPEAPHATLLVLDATVGQNALSQVELFSQAAPVSGLVMTKLDGTARGGILVALAAK 183

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             +PV+F+GVGEG+ DLEPF A+DF+  ITG 
Sbjct: 184 FGLPVHFIGVGEGVEDLEPFAARDFARAITGL 215


>gi|86150925|ref|ZP_01069141.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|315124672|ref|YP_004066676.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85842095|gb|EAQ59341.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|315018394|gb|ADT66487.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 288

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 159/299 (53%), Gaps = 16/299 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
                 KG A T   +     +   ++++   + EE+   L+ +D+   + ++I+  L  
Sbjct: 1   MFDFFKKGLAKTLENIVGVKGE---NKKITKDLLEEI---LLEADVSYEIVEEIIYYLPP 54

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +   K         D+  ++    +   K  N +   +P V L++GVNG GKTT I KL+
Sbjct: 55  QNEVKK-------EDLKRVMGSYFLYEKKETNQE---KPFVELILGVNGAGKTTSIAKLA 104

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
               +   KV+L A DTFR+ AI+QLK+WA +   D V +  G D +A+A++   +A+AK
Sbjct: 105 YLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISKAKAK 164

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D +IIDTAGRL N   L   + K++R+  +    APH  + VLD T G   + Q + F
Sbjct: 165 DFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAF 224

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +    G+I+TK+DGTA+GG L  I    ++P++++GVGE + DL+ F A  +   + 
Sbjct: 225 NELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLL 283


>gi|255655261|ref|ZP_05400670.1| putative signal recognition particle [Clostridium difficile
           QCD-23m63]
 gi|296451246|ref|ZP_06892986.1| cell division protein FtsY [Clostridium difficile NAP08]
 gi|296880402|ref|ZP_06904365.1| cell division protein FtsY [Clostridium difficile NAP07]
 gi|296259852|gb|EFH06707.1| cell division protein FtsY [Clostridium difficile NAP08]
 gi|296428643|gb|EFH14527.1| cell division protein FtsY [Clostridium difficile NAP07]
          Length = 423

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 123/304 (40%), Positives = 190/304 (62%), Gaps = 4/304 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           ++   +L +G       + + I +++ S  ++D+ + E+LE++LI +D+GV     I+E 
Sbjct: 121 VNLFERLKQGLTKAKQGITDRIDEVLKSYTKIDEELLEDLEEILITADVGVNTTMDIIER 180

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           L  K   K +     + + +  ++  +L   +     D    P +IL+VGVNGVGKTT I
Sbjct: 181 LRDKIKQKGIIEPIKVREELKSIVEDILTNENS--TLDIEPAPCIILMVGVNGVGKTTTI 238

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +    G KV+LAA DTFR+AA +QL+IWA+RT+ D +  + G+D  A+ ++A K 
Sbjct: 239 GKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKA 298

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+K DVLI DTAGRLHN + LM  +GK+ +++ R  P A   VL V+DATTGQNA+ Q
Sbjct: 299 AKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVLLVVDATTGQNAVIQ 358

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F  VA  TG+++TK+DGTA+GG ++ +     +PV  +GVGE + DL+ F AK FS 
Sbjct: 359 AKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESVEDLQDFNAKSFSD 418

Query: 309 VITG 312
            + G
Sbjct: 419 ALFG 422


>gi|297527350|ref|YP_003669374.1| signal recognition particle-docking protein FtsY [Staphylothermus
           hellenicus DSM 12710]
 gi|297256266|gb|ADI32475.1| signal recognition particle-docking protein FtsY [Staphylothermus
           hellenicus DSM 12710]
          Length = 295

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 162/302 (53%), Gaps = 13/302 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             R++ K F+    K       + S  +L D + +E +  L+ +D+   VA++I  +L+ 
Sbjct: 1   MFRRIKKAFSKFIDKASSL---LFSREQLLD-LIDEFKFELVSNDVAYDVAEEIAAKLVE 56

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVILVVGVNGVGKTTVIG 129
               K V  +  L D  +   K      +P N        +P++I+ +GVNGVGKTT I 
Sbjct: 57  AVENKIVKDKETLMDFLKKTIKSYFDSVEPINIFYEASKTKPYIIVFLGVNGVGKTTTIA 116

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K +    + G K ++ A DTFR+ A +QL++  +RT       + G+D A++A++A + A
Sbjct: 117 KTAVLFKEKGFKPLMVAADTFRAGAQEQLRVHGERTGIPVFMGKYGADPASIAFDAIRHA 176

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV++IDTAGR+H +S L+  + K+IRV K      PH  + V+DA TG +A+ Q 
Sbjct: 177 ETRGYDVVLIDTAGRMHTDSNLVDELRKIIRVAK------PHRKILVVDALTGNDAIEQA 230

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F    G   +I+TK+D   +GG  + IV + + P+  +GVG+G  DL+PF   +F   
Sbjct: 231 VFFDKAVGVDAVIVTKVDAYEQGGVPLSIVYSIRKPIIMIGVGQGYKDLKPFNIDEFLDK 290

Query: 310 IT 311
           I 
Sbjct: 291 IL 292


>gi|320532001|ref|ZP_08032894.1| signal recognition particle-docking protein FtsY [Actinomyces sp.
           oral taxon 171 str. F0337]
 gi|320135765|gb|EFW27820.1| signal recognition particle-docking protein FtsY [Actinomyces sp.
           oral taxon 171 str. F0337]
          Length = 390

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 178/312 (57%), Gaps = 14/312 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             +++L    A       + +  ++S   L +   EE+ED L+ SD+G+ V   +++EL 
Sbjct: 82  GRMQRLRARLAGA-GGFGKAVLSVLSRGDLTEEDWEEIEDTLLTSDLGIEVTTSLMDELR 140

Query: 72  TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHV--------ILVVGVNG 121
           T+      S    +  V  +EL+  +   L +  N     R           IL+VGVNG
Sbjct: 141 TQAKVLGTSDPEAVRTVLRAELLKLVDPSLDRSLNLKRPTRAEGAQAAPAAAILMVGVNG 200

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT  GKL++ +      V+L A DTFR+AA +QL  W +R   D V SE  G+D A+
Sbjct: 201 TGKTTTCGKLARVLVAQDKTVVLGAADTFRAAAAEQLSTWGERVGVDVVRSEKEGADPAS 260

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY+A ++A  ++ DV+++DTAGRL N + LM  +GK+ RV++++ P     +L VLDAT
Sbjct: 261 VAYDAARRAADQEADVVVVDTAGRLQNKAGLMDELGKIKRVMEKIAPVG--EILLVLDAT 318

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN +RQ ++F    G TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL P
Sbjct: 319 TGQNGMRQAQVFSEAVGITGIVLTKLDGTAKGGIVVTVQRELGVPVKLVGLGEGADDLAP 378

Query: 301 FVAKDFSAVITG 312
           F  + F   + G
Sbjct: 379 FDPEGFVDALLG 390


>gi|15835651|ref|NP_300175.1| signal recognition particle GTPase [Chlamydophila pneumoniae J138]
 gi|16752929|ref|NP_445200.1| signal recognition particle protein FFH [Chlamydophila pneumoniae
           AR39]
 gi|33241451|ref|NP_876392.1| signal recognition particle chain [Chlamydophila pneumoniae TW-183]
 gi|7189572|gb|AAF38471.1| signal recognition particle protein FFH [Chlamydophila pneumoniae
           AR39]
 gi|8978489|dbj|BAA98326.1| signal recognition particle GTPase [Chlamydophila pneumoniae J138]
 gi|33235959|gb|AAP98049.1| signal recognition particle chain [Chlamydophila pneumoniae TW-183]
          Length = 448

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 143/304 (47%), Gaps = 20/304 (6%)

Query: 23  STSLKLKEGITDIISSRRLDDG-VREELED---LLIRSDIGVAVAQKIVEELLTKRYAKD 78
           S S KL    + ++SSRR+++  + E + +    L+ +D+   V +  + ++  K   ++
Sbjct: 4   SLSQKLSSIFSFLVSSRRINEENISESIREVRLALLDADVNYHVVKDFISKVKEKILGEE 63

Query: 79  V-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           +       Q+ +  + E +   L    + F       P +IL+ G+ G GKTT   KL+ 
Sbjct: 64  IWKHVSPGQQFIRCLHEELVAFLSDGREEFTIQ--KTPSIILLCGLQGAGKTTTAAKLAD 121

Query: 134 K--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
               +    KV++   D  R AA+DQLKI   +T A+F  S+       +  +A   A+ 
Sbjct: 122 YVIKNKKAKKVLVVPCDLKRFAAVDQLKILVAQTKAEFYQSQEN-KPIDVVVKALAYAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DTAGRL+ ++ LM  +  + +V +       +  L V++   GQ+ L  V+ 
Sbjct: 181 NGHDFVILDTAGRLNIDNELMEELTAIQKVSQA------NERLFVMNVAMGQDVLATVQA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I++  DG AR G +  I      P+ F G GE I DL  F  +  +  I 
Sbjct: 235 FDQSLDLTGVILSMTDGDARAGAVFSIKHVLGKPIKFEGCGERIQDLRSFDPQSMAERIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|268680269|ref|YP_003304700.1| signal recognition particle protein [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268618300|gb|ACZ12665.1| signal recognition particle protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 446

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 143/295 (48%), Gaps = 12/295 (4%)

Query: 28  LKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           L +     I+  R  D         E L+  L+++D+   + + ++ E+  +  AK +  
Sbjct: 5   LTDSFRSAINKIRFSDDEKSLKSALENLKKALLKADVHHKIVRDLLREVEIETKAKGIGQ 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
              L  +   + ++L    +      S  P  +L+VG+ G GKTT   KL+  +     K
Sbjct: 65  ANFLRALKTNLTQILTVSGRQGFVFASKPPTTVLMVGLQGSGKTTTTVKLANYLKLKQKK 124

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V++ A D  R AA++QLK        D    +  ++  A+A  A ++A+A   DV+++DT
Sbjct: 125 VLVVACDLQRLAAVEQLKQLCGANEIDLYFEDESANPIAIAKNAMQKARAGLYDVVLVDT 184

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL  ++ LM  +  + + +       P  +  V D+ TGQ+A+R    FH     +G+
Sbjct: 185 AGRLAIDTELMEQLEAIKKEVL------PDEIFYVADSMTGQDAVRSAVTFHEKITLSGV 238

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           I++K DG  +GG  + I     +P+ F+GVGE + DLE F+ +   + + G  D 
Sbjct: 239 ILSKFDGDGKGGVALGIAEQTNVPLRFIGVGEKVADLEHFIPERIVSRLMGEGDL 293


>gi|296214801|ref|XP_002753860.1| PREDICTED: signal recognition particle 54 kDa protein isoform 2
           [Callithrix jacchus]
 gi|297297688|ref|XP_001083050.2| PREDICTED: signal recognition particle 54 kDa protein isoform 3
           [Macaca mulatta]
 gi|332229145|ref|XP_003263752.1| PREDICTED: signal recognition particle 54 kDa protein isoform 3
           [Nomascus leucogenys]
 gi|332842112|ref|XP_001136118.2| PREDICTED: signal recognition particle 54 kDa protein isoform 6
           [Pan troglodytes]
 gi|194373485|dbj|BAG56838.1| unnamed protein product [Homo sapiens]
          Length = 466

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 134/265 (50%), Gaps = 12/265 (4%)

Query: 56  SDIGVAVAQKIVEELLT----KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHR 110
           +D+ + + +++ E + +    +  A  ++ ++++   V + + K++ P  K +      +
Sbjct: 4   ADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGK 62

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            +VI+ VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F 
Sbjct: 63  QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 122

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            S    D   +A E  ++ + +  +++I+DT+GR      L   + ++   ++      P
Sbjct: 123 GSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ------P 176

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+G
Sbjct: 177 DNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIG 236

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE I+D EPF  + F + + G  D
Sbjct: 237 TGEHIDDFEPFKTQPFISKLLGMGD 261


>gi|229821030|ref|YP_002882556.1| signal recognition particle-docking protein FtsY [Beutenbergia
           cavernae DSM 12333]
 gi|229566943|gb|ACQ80794.1| signal recognition particle-docking protein FtsY [Beutenbergia
           cavernae DSM 12333]
          Length = 394

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 112/315 (35%), Positives = 165/315 (52%), Gaps = 14/315 (4%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
                S + +L    A  S    + +  +++   + +G  EELED L+ +D+GV    ++
Sbjct: 83  PEPVASRLVRLRDRLAR-SGSFGQALLGVLARDHIGEGDWEELEDTLLAADLGVGPTTEL 141

Query: 67  VEELLTKRYAKDVSVQRVLY---------DVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +E L T+           +           V   + + L   S     D    P  +LVV
Sbjct: 142 MESLRTRVRVLGTRDADSVRALLRELLLAQVDPAMDRALAD-SPSLGADDELHPATVLVV 200

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGS 176
           GVNG GKTT +GKL++ +  +   V+L A DTFR+AA DQL  W  R     +     G+
Sbjct: 201 GVNGTGKTTTVGKLARLLVASDRDVVLGAADTFRAAAADQLATWGSRVGVPVIRADRYGA 260

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A+EA + A     DV+I+DTAGRL N + LM  +GK+ RV  R  P A    L V
Sbjct: 261 DPASVAFEAVRAADEAGADVVIVDTAGRLQNKAGLMDELGKIARVASRRAPIA--ETLLV 318

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN LRQ  +F  V   TG+++TK+DG+A+GG ++ +     +PV F+G+GEG +
Sbjct: 319 LDATTGQNGLRQARVFAEVVPLTGIVLTKLDGSAKGGIVVAVQRELGVPVKFVGLGEGPD 378

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF    F   + 
Sbjct: 379 DLAPFEPDAFVDALL 393


>gi|295693170|ref|YP_003601780.1| cell division protein, signal recognition particle (docking
           protein) ftsy [Lactobacillus crispatus ST1]
 gi|295031276|emb|CBL50755.1| Cell division protein, signal recognition particle (Docking
           protein) FtsY [Lactobacillus crispatus ST1]
          Length = 413

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 171/312 (54%), Gaps = 9/312 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S+++          K   G   T+      +    +  R +D+   ++LEDLLI SD+G 
Sbjct: 97  SDEEPTESQEQLYEK---GLEKTNKGFGARLNAFFAKFRTVDEDFFDDLEDLLIESDVGY 153

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVIL 115
             A+++ +EL  +   ++   +  L  V      +L  K      +   ++   +P+V L
Sbjct: 154 ETAEQLTDELREEAKLQNAKSRDDLKRVIVEKLVDLYDKGGNSEDEQLTYNAEAKPNVYL 213

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL  W  R     V  +  
Sbjct: 214 FVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVPVVTGKEK 273

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++ Y+A ++A  +K D L++DTAGRL N   LMA + K+ R +K+L P  P   L 
Sbjct: 274 ADPASVVYDATERAIGEKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPDQPTETLL 333

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE  
Sbjct: 334 VLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVKLVGLGERA 393

Query: 296 NDLEPFVAKDFS 307
            DL  F A +++
Sbjct: 394 EDLADFDAANYA 405


>gi|313124886|ref|YP_004035150.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Halogeometricum borinquense DSM 11551]
 gi|312291251|gb|ADQ65711.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Halogeometricum borinquense DSM 11551]
          Length = 464

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 131/301 (43%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L+  +  +    RLD+   EE+    +  L+ +D+ V +   +   +  +   
Sbjct: 3   LDNLGSSLRGSLDKLQGKSRLDEDDVEEIVREIQRSLLSADVDVNLVMDLSSSIKERALN 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++        D V +++++ L+ L      D    P  IL+ G+ G GKTT   K++   
Sbjct: 63  EEPPGGTSARDHVLKIVYEELVGLIGEST-DIPLEPQTILLAGLQGSGKTTTAAKMAWWF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  GL+  +   DTFR  A DQ K   +R   +F       D   +A +  +  +    D
Sbjct: 122 STKGLRAAVIQTDTFRPGAYDQAKQMCERAEVEFYGDPDEEDPVKIARDGLEATED--AD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           + I+DTAGR      L+  I  +   +       P   L VLDA  GQ A  Q   F   
Sbjct: 180 IHIVDTAGRHALEDALIDEIEDIDSAVN------PDRSLLVLDAAIGQGAKDQARQFDDS 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+ +TK+DGTA+GGG +  V      + FLG GE + D+E F    F + + G  D
Sbjct: 234 IGIDGVAITKLDGTAKGGGALTAVNETDSSIGFLGTGETVQDIERFEPNGFISRLLGMGD 293

Query: 316 Y 316
            
Sbjct: 294 L 294


>gi|281206952|gb|EFA81136.1| signal recognition particle 54 kDa subunit [Polysphondylium
           pallidum PN500]
          Length = 504

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 149/304 (49%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVA----QKIVEELLT 72
            A    ++   + ++ +S  +++     + +E+ + L R+D+ + +     + I E+L  
Sbjct: 3   LADLGNQISSALANMSNSTIINEETIDTLLKEVGNALSRADVSLKLIIQMRKNIKEQLKL 62

Query: 73  KRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++  V  + + K+L P   P+      + ++I+ VG+ G GKTT + KL
Sbjct: 63  DAMAAGLNKRRIIKKVVFDELIKLLDPGVAPWK-PTKGKSNIIMFVGLQGAGKTTSVTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G    +   DTFR+ A DQLK  A +    F  S+   D  A+A +     + 
Sbjct: 122 ASFYKRKGWATAMVCADTFRAGAFDQLKHNATKAKIPFYGSDTDRDPVAVAKKGVDIFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DT+GR      L   + ++  V+K      P +V+ V+D++ GQ A  Q   
Sbjct: 182 DGAEIIIVDTSGRHKQEEELFKEMKEIETVVK------PDNVIFVMDSSIGQAAFDQATA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG ++GGG I  V   K P+ F+G GE I DL+ F A  F + + 
Sbjct: 236 FKNSVSVGSVIITKMDGNSKGGGAISAVAATKSPIIFIGTGEHIPDLDLFDASSFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|254519215|ref|ZP_05131271.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           7_2_43FAA]
 gi|226912964|gb|EEH98165.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           7_2_43FAA]
          Length = 307

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 124/300 (41%), Positives = 185/300 (61%), Gaps = 2/300 (0%)

Query: 14  IRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              L  G + T   L + I + +  +  +D+ + EELE++LI SDIG+    +I++ L  
Sbjct: 8   FDNLKSGLSKTKDALTDKINETLKLAITIDEDLYEELEEILIMSDIGMDTTLEIIDRLKA 67

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K   + ++    +Y  +  +I  +L+  ++    + S    V+LV+GVNGVGKTT IGKL
Sbjct: 68  KIRKEKINDPSEVYPALKAVIKDILLEGTEEREENLSSEKKVLLVIGVNGVGKTTSIGKL 127

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K  + G KV+LAA DTFR+AAIDQL++W++R   D V    GSD AA+ ++A   A++
Sbjct: 128 AAKNKEEGKKVLLAAADTFRAAAIDQLEVWSERAGVDIVKHMEGSDPAAVVFDAVSAAKS 187

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +D+LI DTAGRLHN   LM  + K+ R++ R    A    L VLDATTGQNA+ Q + 
Sbjct: 188 RNIDLLICDTAGRLHNKKNLMDELSKIGRIIDREFSDASKETLLVLDATTGQNAVIQAKQ 247

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G+I+TK+DGTA+GG +I I  T  IPV ++GVGEGI+DL+ F A+ F+  + 
Sbjct: 248 FMEACPIDGIILTKLDGTAKGGVVISIKNTLNIPVRYIGVGEGIDDLQEFDAEGFAEALF 307


>gi|292654301|ref|YP_003534198.1| signal recognition particle 54K protein [Haloferax volcanii DS2]
 gi|28380161|sp|Q977V2|SRP54_HALVO RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|15277690|gb|AAK93963.1|AF395887_1 signal recognition particle 54 kDa subunit-like protein [Haloferax
           volcanii]
 gi|291371443|gb|ADE03670.1| signal recognition particle 54K protein [Haloferax volcanii DS2]
          Length = 465

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 140/301 (46%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L+  +  +    RLD+     + +E++  L+ +D+ V++   + + + T+   
Sbjct: 3   LDNLGSSLRGSLDKLRGKSRLDEDDVQEIVKEIQRSLLSADVDVSLVMDLSDSIKTRALE 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++        D V +++++ L+ L      +       I++ G+ G GKTT   K++   
Sbjct: 63  EEPPGGTSARDHVLKIVYEELVDLIGEST-EIPLESQTIMLAGLQGSGKTTTSAKMAWWF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  GL+  +   DTFR  A DQ K   +R   DF       D   +A E  +  +    D
Sbjct: 122 SKKGLRPAVIQTDTFRPGAYDQAKQMCERAEVDFYGDPDCDDPVQIAREGLEATED--AD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I+DTAGR      L+  I ++  V++      P   L VLDA  GQ A  Q + F   
Sbjct: 180 VHIVDTAGRHALEDDLIDEIEEIEGVVQ------PDLNLLVLDAAIGQGAKEQAQQFDES 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+++TK+DGTA+GGG +  V      + FLG+GE + D+E F    F + + G  D
Sbjct: 234 IGIGGVVITKLDGTAKGGGALTAVNETDSSIAFLGMGETVQDIERFEPNGFISRLLGMGD 293

Query: 316 Y 316
            
Sbjct: 294 L 294


>gi|302691416|ref|XP_003035387.1| hypothetical protein SCHCODRAFT_74858 [Schizophyllum commune H4-8]
 gi|300109083|gb|EFJ00485.1| hypothetical protein SCHCODRAFT_74858 [Schizophyllum commune H4-8]
          Length = 573

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 149/309 (48%), Gaps = 20/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    KL   ++ +  +  +D    D   +E+   L+ SD+ V +   +  ++ TK  A
Sbjct: 3   LADLGRKLNAALSSLNRAPVVDEKVLDATLKEITAALLESDVNVKLVASLRSKVKTKVKA 62

Query: 77  --------KDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
                   KDV+ + V+   V + +  ++ P  +P+     H  +VI+ VG+ G GKTT 
Sbjct: 63  IFEGGDKTKDVNRKNVIQKAVFDELVALVDPGVEPYKPKKGHT-NVIMAVGLQGNGKTTT 121

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+      G K  +   DTFR+ A DQ +  A +    +  S   +D  ++A +   
Sbjct: 122 CTKLAVHYQKRGFKSAIVCADTFRAGAFDQTRQSATKAKVAYFGSYTETDPVSIAAQGVA 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           + + ++ +V+I+DT+GR      L   +  + + +K      P   + VLDA+ GQ A  
Sbjct: 182 KFKKERFEVIIVDTSGRHKQEQELFEEMILIGQAVK------PDMTILVLDASIGQAAEA 235

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F   A    +I+TKMDG A+GGG I  V   + P+ FLGVGE ++DL+ F  + F 
Sbjct: 236 QARAFKDSADFGAIIVTKMDGHAKGGGAISAVAATQTPIIFLGVGEHLHDLDRFAPQPFI 295

Query: 308 AVITGCLDY 316
           + + G  D 
Sbjct: 296 SKLLGLGDM 304


>gi|296273625|ref|YP_003656256.1| signal recognition particle-docking protein FtsY [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097799|gb|ADG93749.1| signal recognition particle-docking protein FtsY [Arcobacter
           nitrofigilis DSM 7299]
          Length = 310

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 101/291 (34%), Positives = 162/291 (55%), Gaps = 11/291 (3%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           F+S   K  + I  ++  ++ +    E++E+LLI +D+  ++ +K ++ L      K + 
Sbjct: 24  FSSALSKTFDNIKSVVPQKK-EKISFEDIEELLIEADMDYSIIEKAMDGLPEMINRKQLR 82

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            + V          ML   +   N +    P V L++GVNG GKTT I KL+        
Sbjct: 83  HRLV----------MLFEHAPDVNMENLPSPFVQLIIGVNGAGKTTTIAKLANLYKKDNK 132

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            V+L AGDTFR+AAI+QL IWAD+     + ++ G D +A+AY+    A A+ +D +IID
Sbjct: 133 SVILGAGDTFRAAAIEQLSIWADKLEVPIIKTKQGHDPSAVAYDTISSAVARNIDNVIID 192

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL   + L   + K+++V  +    APH  L +LD T G  A+ Q + F+ + G  G
Sbjct: 193 TAGRLQTQTNLSNELKKIVKVCSKAKEGAPHQKLMILDGTQGNTAIEQAKAFNEMVGVDG 252

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +I+TK+DGTA+GG L  I    ++P++++GVGE +NDL  F   +F   + 
Sbjct: 253 IIVTKLDGTAKGGALFSISNRLELPIFYIGVGETMNDLVEFSPDNFVDSLL 303


>gi|315452863|ref|YP_004073133.1| signal recognition particle protein [Helicobacter felis ATCC 49179]
 gi|315131915|emb|CBY82543.1| signal recognition particle protein [Helicobacter felis ATCC 49179]
          Length = 443

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 149/297 (50%), Gaps = 15/297 (5%)

Query: 26  LKLKEGITDIISSRRLDDGV------REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +   + +   R  D +       +EL+  L+R+D+   VA+++V+ +  K  AK +
Sbjct: 3   DTLTQSFKNALGKIRFQDDLKALEKALDELKKALLRNDVHHKVAKELVKNIEAKTKAKGI 62

Query: 80  SVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
             Q+ L  + E + ++L +P +          P ++L+ G+ G GKTT   KL+  +   
Sbjct: 63  GKQQFLDSLQESLLEILSVPGASSGFVYAPTPPTIVLMCGLQGGGKTTTCAKLANYLKTR 122

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AAI+QL++  ++   +    E       +A  A K+AQ  + DV+I
Sbjct: 123 HKKVLLVACDLERLAAIEQLQVLGEQIGIEVYHQE--GSVLDIAKGALKRAQEGQFDVVI 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  +  +  +L  L          V DA +GQ+ +R  + FH   G 
Sbjct: 181 VDSAGRLAIDKPLMEELKALKNLLNPL------ETFYVADALSGQDGVRSAQTFHTEIGL 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G++++K D  ++GG  + I    +IP+ F+G GE I DL+ FV    +  + G  D
Sbjct: 235 SGVVLSKFDSDSKGGVALGIAHQLQIPLRFIGHGEKIPDLDVFVPDRIAQRLMGAGD 291


>gi|171920360|ref|ZP_02931692.1| signal recognition particle protein [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|186701891|ref|ZP_02971545.1| signal recognition particle protein [Ureaplasma parvum serovar 6
           str. ATCC 27818]
 gi|171902787|gb|EDT49076.1| signal recognition particle protein [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|186701199|gb|EDU19481.1| signal recognition particle protein [Ureaplasma parvum serovar 6
           str. ATCC 27818]
          Length = 448

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 15/297 (5%)

Query: 25  SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
           S ++ + + +   +      +  E+   L+ +D+ + V +K ++ +  K     V   + 
Sbjct: 11  SKQMSKKLKNATIAEEDIKELLSEIRIALLDADVNLLVVKKFIKNIKEKTVGLYVEANQK 70

Query: 85  -----LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA- 138
                L  + + + ++L   +KP N   S     I++VG+ G GKTT  GKL+    +  
Sbjct: 71  PADLVLKIIKDELVEILGKENKPVNTAKSQ--LKIMMVGLQGSGKTTTTGKLANYFKNKY 128

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             K +L A D +R AAIDQL+  A +   DF   E       +   A  +A   + +++I
Sbjct: 129 NKKPLLVAADIYRPAAIDQLRTLAKQVRVDFW-EEGTQRPDLIVKNALNKADENENNLII 187

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL  N  LM  +  + + L       P  V  V+DA  GQ+ +     F+     
Sbjct: 188 VDTAGRLQTNEELMQELVNVKKTLN------PDEVFLVVDAMAGQDIINVATEFNNWLKL 241

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG+I+TK+D  AR G ++ +     IP+ F G GE I  ++ F  +  +  I G  D
Sbjct: 242 TGIIVTKLDSDARAGAVLSLTSLLNIPIKFTGTGEKIGSIDSFYPERMADRILGLGD 298


>gi|306829602|ref|ZP_07462792.1| cell division protein FtsY [Streptococcus mitis ATCC 6249]
 gi|304428688|gb|EFM31778.1| cell division protein FtsY [Streptococcus mitis ATCC 6249]
          Length = 435

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 119/302 (39%), Positives = 172/302 (56%), Gaps = 7/302 (2%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ R +D+   EELE+LLI SD+GV VA  + EEL  +
Sbjct: 132 EKYDRSLKKTRTGFGARLNAFFANFRSVDEDFFEELEELLIMSDVGVQVASNLTEELRYE 191

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVVGVNGVGKTTVIG 129
              ++      L  V  +I K++    K  N+D    F     V+L VGVNGVGKTT IG
Sbjct: 192 AKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQDGLTVMLFVGVNGVGKTTSIG 249

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ +   AG KVML A DTFR+ A+ QL  W  R     V     +D A++ ++  ++A
Sbjct: 250 KLAHRYKQAGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTGPEKADPASVVFDGMERA 309

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+ +D+L+IDTAGRL N   LMA + K+ R++KR+ P APH     LDA+TGQNAL Q 
Sbjct: 310 VAEGIDILMIDTAGRLQNKDNLMAELEKIGRIIKRVVPEAPHETFLALDASTGQNALVQA 369

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F  +   TG+++TK+DGTARGG ++ I     IPV  +G GE I+D+  F +++F   
Sbjct: 370 KEFSKITPLTGIVLTKIDGTARGGVVLAIREELNIPVKLIGFGEKIDDIGEFNSENFMKG 429

Query: 310 IT 311
           + 
Sbjct: 430 LL 431


>gi|42520886|ref|NP_966801.1| signal recognition particle protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410626|gb|AAS14735.1| signal recognition particle protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 447

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S +  L    + +     + +        E+   LI +D+ + VA+K +  +  K   
Sbjct: 2   FKSLTESLNSVFSKLRGKSIISEDDFNLAMREIRIALIEADVSLEVAKKFINNIKDKVIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V + +  +L       N      P VI++VG+ G GKTT  GKL
Sbjct: 62  EKVIKSVSPAQMIIKIVQDNLVAVLGSEKSDLNLAV-KPPAVIMMVGLQGAGKTTTSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+     KVMLA+ D +R AA  QL++   +     +   I      +   A   A+ 
Sbjct: 121 ALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDVQTLPVVIDEKPITITKRAIAIAKN 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLI+DTAGRLH ++ +M  +  +  +       +P  V+ V DA  GQ+A+   + 
Sbjct: 181 DNYDVLILDTAGRLHIDNNMMNELKAVKEI------ASPAEVILVADAMIGQDAVNIAKS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+ V G TG+I+T++DG ARGG  + + +    P+ F+  GE ++DL+ F     +  I 
Sbjct: 235 FNEVIGVTGIILTRVDGDARGGAALSMKMIADCPIKFIACGEKLSDLDDFYPDRIAKRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 SMGD 298


>gi|313897518|ref|ZP_07831061.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           HGF2]
 gi|312957888|gb|EFR39513.1| signal recognition particle-docking protein FtsY [Clostridium sp.
           HGF2]
          Length = 323

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 168/311 (54%), Gaps = 15/311 (4%)

Query: 11  LSWIRKLTK-------------GFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRS 56
           +    KL +             G   +     E I  + +    +++   E+L  +L+ +
Sbjct: 1   MGIFSKLKQTFSSKKDGDRYLSGLDKSKKSFSERIRKLALGFTGVNEEFLEDLMVVLLEA 60

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           DIG+  AQKIV+E+ ++   + +     + + + E++H++   +           P VIL
Sbjct: 61  DIGIKTAQKIVDEVESRAMDQKLKSFDEISECLIEVMHELYASVEDEDFHKNEDGPTVIL 120

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VGVNG GKTT   KL+K     G  V+LAA DTFR+ AIDQL  WADR     +    G
Sbjct: 121 MVGVNGSGKTTTTAKLTKLFQSEGSSVVLAAADTFRAGAIDQLAKWADRLGVTCIKGREG 180

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D +A   +A + A+   +D LI DTAGRL N + LM  + KM RV++R  P APH V  
Sbjct: 181 GDPSAALVDACRYAKEHGMDYLIGDTAGRLQNKANLMQELSKMRRVIEREIPGAPHEVWL 240

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQN + Q ++F      +G+I+TKMDGTA+GG +I I     +PV ++G+GE  
Sbjct: 241 VLDATTGQNGISQAQIFLETTKVSGIILTKMDGTAKGGIVIAIRDLLGLPVKYIGLGEKE 300

Query: 296 NDLEPFVAKDF 306
           +DL PF    +
Sbjct: 301 DDLRPFDIDSY 311


>gi|15618039|ref|NP_224323.1| Signal recognition particle GTPase [Chlamydophila pneumoniae
           CWL029]
 gi|4376378|gb|AAD18268.1| Signal Recognition Particle GTPase [Chlamydophila pneumoniae
           CWL029]
          Length = 448

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 143/304 (47%), Gaps = 20/304 (6%)

Query: 23  STSLKLKEGITDIISSRRLDDG-VREELED---LLIRSDIGVAVAQKIVEELLTKRYAKD 78
           S S KL    + ++SSRR+++  + E + +    L+ +D+   V +  + ++  K   ++
Sbjct: 4   SLSQKLSSIFSFLVSSRRINEENISESIREVRLALLDADVNYHVVKDFISKVKEKILGEE 63

Query: 79  V-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           +       Q+ +  + E +   L    + F       P +IL+ G+ G GKTT   KL+ 
Sbjct: 64  IWKHVSPGQQFIRCLHEELVAFLSDGREEFTIQ--KTPSIILLCGLQGAGKTTTAAKLAD 121

Query: 134 K--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
               +    KV++   D  R AA+DQLKI   +T A+F  S+       +  +A   A+ 
Sbjct: 122 YVIKNKKAKKVLVVPCDLKRFAAVDQLKILVAQTKAEFYQSQEN-KPINVVVKALAYAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DTAGRL+ ++ LM  +  + +V +       +  L V++   GQ+ L  V+ 
Sbjct: 181 NGHDFVILDTAGRLNIDNELMEELTAIQKVSQA------NERLFVMNVAMGQDVLATVQA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I++  DG AR G +  I      P+ F G GE I DL  F  +  +  I 
Sbjct: 235 FDQSLDLTGVILSMTDGDARAGAVFSIKHVLGKPIKFEGCGERIQDLRSFDPQSMAERIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|256849803|ref|ZP_05555234.1| cell division protein [Lactobacillus crispatus MV-1A-US]
 gi|256713292|gb|EEU28282.1| cell division protein [Lactobacillus crispatus MV-1A-US]
          Length = 415

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 109/295 (36%), Positives = 168/295 (56%), Gaps = 6/295 (2%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   T+      +    +  R +D+   ++LEDLLI SD+G   A+++ +EL  +   +
Sbjct: 113 KGLEKTNKGFGARLNAFFAKFRTVDEDFFDDLEDLLIESDVGYETAEQLTDELREEAKLQ 172

Query: 78  DVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +   +  L  V      +L  K      +   ++   +P+V L VGVNG GKTT IGKL+
Sbjct: 173 NAKSRDDLKRVIVEKLVDLYDKGGNSEDEQLTYNAEAKPNVYLFVGVNGAGKTTTIGKLA 232

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K+  D G  V+LAA DTFR+ A++QL  W +R     V  +  +D A++ Y+A ++A  +
Sbjct: 233 KRFKDEGKSVILAAADTFRAGAVEQLVEWGNRVDVPVVTGKEKADPASVVYDATERAIRE 292

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D L++DTAGRL N   LMA + K+ R +K+L P  P   L VLD +TGQNAL Q + F
Sbjct: 293 KADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPDQPTETLLVLDGSTGQNALLQAKDF 352

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 TGL++TK+DG+++GG ++ I     +PV  +G+GE   DL  F A +++
Sbjct: 353 DKTTELTGLVLTKLDGSSKGGVVLAIRNEMNLPVKLVGLGERAEDLADFDAANYA 407


>gi|242308897|ref|ZP_04808052.1| signal recognition particle protein [Helicobacter pullorum MIT
           98-5489]
 gi|239524561|gb|EEQ64427.1| signal recognition particle protein [Helicobacter pullorum MIT
           98-5489]
          Length = 446

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 83/294 (28%), Positives = 144/294 (48%), Gaps = 13/294 (4%)

Query: 28  LKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           + E     I+  R  D         +EL+  L++SD+   V + ++EE+  K     +  
Sbjct: 5   ITESFQSAINKIRFQDDEKALKRALDELKKTLLKSDVHYKVLKSLLEEIEQKTKLAGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           +  L  + E +  +L              P ++L+ G+ G GKTT   KL+  + +   K
Sbjct: 65  ENFLNALKESLTHILTAPGNYGFIFAPKPPTIVLMAGLQGSGKTTTTAKLANYLKNKQKK 124

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+LAA D  R AA++QL+  + +   DF   E       +A  A ++A +   DVLI+D+
Sbjct: 125 VLLAACDLQRLAAVEQLRQLSLQVEVDFFY-EENKSPIEIAIAAKEKAISGLYDVLIVDS 183

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL  +  LM  +  +   ++      P+ +  V+D+ +GQ+ ++   +FH     +G+
Sbjct: 184 AGRLAIDEDLMQELQGIKDSIQ------PNEIFYVVDSLSGQDGVKSAAIFHEKMDLSGV 237

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I++K DG ++GG  + I     IP+ F+GVGE I DLE F+ +     + G  D
Sbjct: 238 ILSKFDGDSKGGIALSIAHQLGIPLRFIGVGEKIPDLEVFIPQRIVGRLMGAGD 291


>gi|114777656|ref|ZP_01452616.1| cell division protein FtsY [Mariprofundus ferrooxydans PV-1]
 gi|114551872|gb|EAU54406.1| cell division protein FtsY [Mariprofundus ferrooxydans PV-1]
          Length = 275

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 108/284 (38%), Positives = 165/284 (58%), Gaps = 16/284 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLD---DGVREELEDLLIRSDIGVAVAQKIVE 68
           S+  +L KG   +     EG+  +I  R +D        ++ED LI +D G  ++  +V+
Sbjct: 3   SFFSRLKKGLTRSR----EGLAQLIPGRDVDVLSADDWMDIEDGLIMADCGAELSTALVK 58

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +  +R          +  +   + +ML     P     +  P V+LVVGVNG GKTT I
Sbjct: 59  SVRKRRGG-------SVAALKSAMLEMLPD--APPVTQATDGPFVLLVVGVNGTGKTTTI 109

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+      G  V++ AGDTFR+AA++QL +W +R  AD V    G+D AA+A++  ++
Sbjct: 110 GKLATMFRAEGKSVLVGAGDTFRAAAVEQLAVWVERAGADMVRQSEGADPAAVAFDTIQR 169

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
             A+  DV+I+DTAGR+  +  LM  + K+ RV+ +  P APH V QV+D  TGQNA+ Q
Sbjct: 170 GLARAYDVVIVDTAGRVQTDRGLMDELAKVRRVITKAYPAAPHEVWQVVDGGTGQNAVVQ 229

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VE F  VAGTTGLI+TK+DG+ +GG ++ +     +P+ ++GVG
Sbjct: 230 VEKFREVAGTTGLIVTKLDGSGKGGIVLQLTEKFGLPIRYVGVG 273


>gi|119719417|ref|YP_919912.1| GTP-binding signal recognition particle [Thermofilum pendens Hrk 5]
 gi|119524537|gb|ABL77909.1| signal recognition particle subunit FFH/SRP54 (srp54) [Thermofilum
           pendens Hrk 5]
          Length = 431

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 144/304 (47%), Gaps = 16/304 (5%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
            S    L   ++ I SS  LD    D V  EL+  L+++D+ V +   + E +  + + +
Sbjct: 2   ESLKESLMGVVSRIRSSVLLDSREVDLVIRELQRALLKADVDVGLVLSVSERIKKRFFEE 61

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +        + ++  + E +  +L     P     S  P  ++ VG+ G GKTT + K++
Sbjct: 62  EQPPGFSKKEVLVKILYEELVNLLGGEETP-ELKVSSTPFKVMFVGLEGSGKTTTVAKVA 120

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G +V + A DT+R  A +QL+  A++    F       DA +LA    K    K
Sbjct: 121 NYYKRKGYRVGVVAADTYRPGAYEQLRSLAEKVGVPFYGDPQERDAVSLALRGVKVLSDK 180

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            + +++IDTAGR  +   LM  +  + R +K      P +V+ V+DAT G    RQ   F
Sbjct: 181 GIQMILIDTAGRHKDEEALMEEVKTLYREVK------PDAVVLVVDATQGSAVARQARAF 234

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                   +I+ KMDG+A+GGG +  V + K  V F+G GE I DLE F  K F A + G
Sbjct: 235 QEAMPFGYVIVAKMDGSAKGGGALSAVASSKARVIFIGTGEKIEDLEEFNPKKFVARLLG 294

Query: 313 CLDY 316
             D 
Sbjct: 295 MPDL 298


>gi|205373346|ref|ZP_03226150.1| signal recognition particle protein [Bacillus coahuilensis m4-4]
          Length = 382

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 8/235 (3%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GL 140
           Q+V+  V E +  ++           +  P V+++VG+ G GKTT  GKLS  +      
Sbjct: 8   QQVIKVVKEELTDLMGGEQSKIAVS-NKPPTVVMMVGLQGAGKTTTTGKLSNLLRKKYNR 66

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K +L A D +R AAI QL+    + +              +A +  ++A+    D ++ID
Sbjct: 67  KPLLVAADIYRPAAIKQLETLGKQLNLPVFSMGDQVSPVEIAKKGIEKAKEDHQDYVLID 126

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRLH +  LM  + ++  + K      P  +  V+DA TGQ+A+   + F    G TG
Sbjct: 127 TAGRLHVDENLMDELKQIKELSK------PDEIFLVVDAMTGQDAVNVAKSFDDALGITG 180

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +++TK+DG  RGG  + I    + P+ F+G+GE ++ LEPF  +  +  I G  D
Sbjct: 181 VVLTKLDGDTRGGAALSIRSVTEKPIKFVGLGEKMDALEPFHPERMAQRILGMGD 235


>gi|302381703|ref|YP_003817526.1| signal recognition particle protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192331|gb|ADK99902.1| signal recognition particle protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 518

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 146/306 (47%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L      I     L +  V E + +    L+ +D+ + V +  +     K   
Sbjct: 2   FEALNERLTGVFDRITGRGALSEKDVSEAMREVRVALLEADVALPVVKDFIAFATEKATG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           ++V        +V+  V + + +ML      P N + +  P V+L+ G+ G GKTT   K
Sbjct: 62  EEVIRSVRPADQVIKIVYDGLVEMLGGEEPTPLNLNAT-PPAVLLMAGLQGSGKTTTSAK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++      KVM+A+ DT R AA++QL     +     +    G  A  +   A   A
Sbjct: 121 LALRLTKFDRKKVMMASLDTRRPAAMEQLAQLGKQIEVAVLPIVAGESAVQITRRALTSA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DVLI+DTAGR+  +  LM  + ++  +        P   + V D+ TGQ+A+R  
Sbjct: 181 KLQGFDVLILDTAGRITLDEGLMNEVAEVAAIAT------PVETILVADSLTGQDAVRTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH     TGLI+T+ DG  RGG ++ +     +P+ ++G GE ++ LE F A+  +  
Sbjct: 235 KAFHERLPLTGLILTRADGDGRGGAMLSMRAVTGLPIKYMGSGEKVDALEVFDARRVAGR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGQGD 300


>gi|262341219|ref|YP_003284074.1| signal recognition particle protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272556|gb|ACY40464.1| signal recognition particle protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 452

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 138/304 (45%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F     K  + +  +     + +       +E+   LI +D+   +A+  +  +  K   
Sbjct: 2   FEHLQNKFHKALHILKGDDSITEMNIASSMKEIVRALIDADVNYKIAKDFIRRVKEKSIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V       Q +   V + +  ++    K    + S  P +IL+ G+ G GKT+   KL
Sbjct: 62  KKVLTSLNPKQLITKIVYDELVLLMGG--KSIEMNLSKDPSIILICGLQGSGKTSFSSKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +       +L A D  R AAIDQLK  A++ +      +   +   +  ++   +  
Sbjct: 120 AFFLRKKNKNPLLVAADIHRPAAIDQLKFIAEKVNIPIFYLKNSKNIIEILDKSVIYSFK 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            K +V+IIDTAGRL  + I+M  I K+ +  K      P  +L V+DA TGQ+A+   + 
Sbjct: 180 NKNNVIIIDTAGRLAIDQIMMEEIVKIHQHSK------PDEILFVVDAMTGQDAINTAQS 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +    G++MTK+DG +RGG  I +      P+ F+  GE I DLE F     +  I 
Sbjct: 234 FSKILNFDGIVMTKLDGDSRGGAAITMSSAVGKPIKFISNGEKIEDLEIFHPDRIANRIL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|226322323|ref|ZP_03797841.1| hypothetical protein COPCOM_00084 [Coprococcus comes ATCC 27758]
 gi|225209245|gb|EEG91599.1| hypothetical protein COPCOM_00084 [Coprococcus comes ATCC 27758]
          Length = 291

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 124/282 (43%), Positives = 175/282 (62%), Gaps = 4/282 (1%)

Query: 32  ITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ-RVLYDVS 89
           +  I     ++D+   EELE++LI  D+GV     I+++L  K   + +         + 
Sbjct: 1   MDSIFHGFSKIDEDFYEELEEVLIMGDLGVKATYAILDDLRKKVKEQHIKEPIECRQLLI 60

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           + I + +        ++F ++  V+LV+GVNGVGKTT IGKL+ KM   G KV+LAA DT
Sbjct: 61  DSIKEQMD--VGETAYEFENQTSVVLVIGVNGVGKTTTIGKLAGKMRGQGKKVVLAAADT 118

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           FR+AA DQLK WA R+ AD +  + G+D AA+ Y+A   A+A+K D+L++DTAGRLHN  
Sbjct: 119 FRAAAGDQLKEWAHRSDADLIGGQEGADPAAIVYDAVAAAKARKADILLVDTAGRLHNKK 178

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  + K+ RVL+R  P A    L VLDATTGQNAL Q + F  VA  TG+I+TKMDGT
Sbjct: 179 NLMEELKKINRVLEREYPEAYRETLVVLDATTGQNALSQAKEFSDVADITGIILTKMDGT 238

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           A+GG  + I     IPV ++GVGE I+DL+ F + +F   + 
Sbjct: 239 AKGGIAVAIQAELGIPVKYIGVGETIDDLQKFDSDEFVQALF 280


>gi|330834459|ref|YP_004409187.1| signal recognition particle-docking protein FtsY [Metallosphaera
           cuprina Ar-4]
 gi|329566598|gb|AEB94703.1| signal recognition particle-docking protein FtsY [Metallosphaera
           cuprina Ar-4]
          Length = 378

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 87/293 (29%), Positives = 154/293 (52%), Gaps = 19/293 (6%)

Query: 32  ITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-- 85
           +   I  + + +     + +EL   L+  D+ + V +KI+E+L      K VS +  L  
Sbjct: 91  LFGFIRYKEIKEEDVSDLIDELRFELLEDDVSLEVTEKILEDLKRNLVGKKVSRKENLEQ 150

Query: 86  -------YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
                    + +++ K  +          S +P V++  GVNGVGKTT I K +  +  +
Sbjct: 151 LIHESLKKSLKDILKKNYIEKDVVETIKTSKKPFVVMFFGVNGVGKTTTIAKFAMLLKKS 210

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           GL V++AA DTFR+AA +QL + A +     V  + G D A++A++A + A+++ +D ++
Sbjct: 211 GLSVIIAASDTFRAAAQEQLAVHASKLEVPLVKGKYGGDPASVAFDAIQSAKSRGIDAVL 270

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDTAGR+H +  L+  + +++R+ K      P+  + VLD+  G +AL+Q E F    G 
Sbjct: 271 IDTAGRMHTDKDLVEELRRLVRIAK------PNLKVLVLDSLAGNDALKQAEYFEKAVGY 324

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             +I+TK+D  A+GG  + +      PV +LG+G+  + L  F    F+  + 
Sbjct: 325 DFVILTKVDADAKGGIALSLAYELGKPVMYLGMGQDYDSLVKFNPDWFTERLL 377


>gi|126695347|ref|YP_001090233.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9301]
 gi|126542390|gb|ABO16632.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9301]
          Length = 439

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 106/312 (33%), Positives = 179/312 (57%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ + + W+ KL +G   T       + D +    L     ++LE LLIR+D+G+    
Sbjct: 125 QISIDEIDWLTKLRRGLEETRKGFVTELLDKLGDDPLTPEALDDLETLLIRADVGIDSTD 184

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVN 120
           K++  L TK   + +  +  +  + + +  ++    K    D       + +V L+VGVN
Sbjct: 185 KVISSLRTKLNEEVLGAEAGIKFLKKELKLIIDKPIKSSGTDLLVPQKGKLNVWLLVGVN 244

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+   S +  K ++AA DTFR+AA++QLK+W DR++ + + ++  + D A
Sbjct: 245 GVGKTTTLGKLAYLSSKSNYKTLIAAADTFRAAAVEQLKVWGDRSNVEVISNQSKNADPA 304

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+ + VD+L++DTAGRL   + LM  + K+ +++ R  P A    L VLDA
Sbjct: 305 AVVFDAINSAKKRNVDLLLVDTAGRLQTKNNLMDELAKIKKIIDRKVPDAIVESLLVLDA 364

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN L+Q + F   A  +G I+TK+DGT+RGG  + +     +P+ F+G GEGI DL 
Sbjct: 365 SQGQNGLKQAKSFAKSADLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIGAGEGIKDLR 424

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 425 PFNSYEFVEAML 436


>gi|283458195|ref|YP_003362812.1| signal recognition particle GTPase [Rothia mucilaginosa DY-18]
 gi|283134227|dbj|BAI64992.1| signal recognition particle GTPase [Rothia mucilaginosa DY-18]
          Length = 373

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 102/311 (32%), Positives = 172/311 (55%), Gaps = 6/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            +   S   + +L    A ++  L +G+  ++S  R+D  V +E+E+ L+ +D+G     
Sbjct: 64  DMPDPSAGRLVRLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLLADLGSEPTT 123

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           ++VE L  +   +  S    +  +   EL+  +   + +      S     +++V     
Sbjct: 124 RLVEALQQRVRVEGTSNPAAVKKMLREELVKIVRPDMDRELKTAGSDGNPGVVLVVGVNG 183

Query: 123 G-KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
             KTT +GK+++ M   G  ++L A DTFR+AA +QL  W DR     V SE  G+D A+
Sbjct: 184 VGKTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEKEGADPAS 243

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++A K  + + VD +++DTAGRL N S LM  +GK+ RV+++  P     VL V+DAT
Sbjct: 244 VAFDAVKAGKEQGVDTVLVDTAGRLQNKSGLMDQLGKIKRVIEKEAPVT--EVLLVIDAT 301

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN + Q ++F  +   TG+++TK+DGTA+GG ++ I     +PV  +G+GEG +DL P
Sbjct: 302 TGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLGEGPDDLAP 361

Query: 301 FVAKDFSAVIT 311
           F  + F   + 
Sbjct: 362 FDPEAFVDALL 372


>gi|227878858|ref|ZP_03996764.1| signal recognition particle docking protein FtsY [Lactobacillus
           crispatus JV-V01]
 gi|262046952|ref|ZP_06019912.1| cell division protein [Lactobacillus crispatus MV-3A-US]
 gi|227861549|gb|EEJ69162.1| signal recognition particle docking protein FtsY [Lactobacillus
           crispatus JV-V01]
 gi|260572934|gb|EEX29494.1| cell division protein [Lactobacillus crispatus MV-3A-US]
          Length = 415

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 109/295 (36%), Positives = 167/295 (56%), Gaps = 6/295 (2%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   T+      +    +  R +D+   ++LEDLLI SD+G   A+++ +EL  +   +
Sbjct: 113 KGLEKTNKGFGARLNAFFAKFRTVDEDFFDDLEDLLIESDVGYETAEQLTDELREEAKLQ 172

Query: 78  DVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +   +  L  V      +L  K      +   ++   +P+V L VGVNG GKTT IGKL+
Sbjct: 173 NAKSRDDLKRVIVEKLVDLYDKGGNSEDEQLTYNAEAKPNVYLFVGVNGAGKTTTIGKLA 232

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K+  D G  V+LAA DTFR+ A++QL  W  R     V  +  +D A++ Y+A ++A  +
Sbjct: 233 KRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVPVVTGKEKADPASVVYDATERAIRE 292

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D L++DTAGRL N   LMA + K+ R +K+L P  P   L VLD +TGQNAL Q + F
Sbjct: 293 KADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPDQPTETLLVLDGSTGQNALLQAKDF 352

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 TGL++TK+DG+++GG ++ I     +PV  +G+GE   DL  F A +++
Sbjct: 353 DKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVKLVGLGERAEDLADFDAANYA 407


>gi|157870075|ref|XP_001683588.1| signal recognition particle [Leishmania major strain Friedlin]
 gi|68126654|emb|CAJ04436.1| putative signal recognition particle [Leishmania major strain
           Friedlin]
          Length = 519

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 146/306 (47%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLT 72
            A    K+ + I  + +   L +D V+E   E+   L+++D+ V + +K    I  EL  
Sbjct: 3   LAELGQKIGQAIHRMSAKSMLGEDDVKELMNEIARALLQADVNVTIVKKLQVSIRTELAL 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                 ++ +++L + V   + ++L P  KPF      R +V++ VG+ G GKTT   K 
Sbjct: 63  AEEGAGLNKRKILQNAVFNGLKRILDPGVKPF-LPVKGRHNVVMFVGLQGSGKTTSCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQL+  A +    F  S   +D  A+A E   + + 
Sbjct: 122 AAYFQRKGFKTALVCADTFRAGAYDQLRQNATKAKVRFYGSLTEADPVAIAKEGVAELKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR    S L   + ++   +K      P+ ++ V+ AT GQ    Q   
Sbjct: 182 EKYDLIIVDTSGRHKQESALFEEMKQVEEAVK------PNDIVFVMSATDGQAVEEQARN 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +     +I+TK+D   +GGG +  V   + P+ F+G GE   D + F  + F   + 
Sbjct: 236 FKEMVAVGSVIVTKLDCQTKGGGALSAVAATRSPIVFIGTGEHFEDFDLFNPERFVQKML 295

Query: 312 GCLDYG 317
           G  D G
Sbjct: 296 GMGDIG 301


>gi|58584310|ref|YP_197883.1| Signal recognition particle GTPase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58418626|gb|AAW70641.1| Signal recognition particle GTPase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 447

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S +  L      +     + +        E+   LI +D+ + VA+K + ++  K   
Sbjct: 2   FKSLTESLNSVFNKLKGKSIISEDDFNLAIREIRIALIEADVSLEVAKKFINDIKDKVIG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V       Q ++  V + +  +L       N   ++ P VI++VG+ G GKTT  GKL
Sbjct: 62  EKVIKSVSPAQMIIKVVQDNLITILGLEKSDLNLG-ANPPAVIMMVGLQGAGKTTTSGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+     KVMLA+ D +R AA  QL++   +     + +       A+   A   A+ 
Sbjct: 121 ALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDIQTLSTVTDEKPTAITKRALAAAKN 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLI+DTAGRLH +  +M  +  + ++       +P  V+ V DA  GQ+A+   + 
Sbjct: 181 DNYDVLILDTAGRLHIDDNMMNELKTVKKI------ASPAEVILVADAMIGQDAVNIAKS 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+I+T++DG ARGG  + + +    P+ F+  GE ++DL+ F     +  I 
Sbjct: 235 FNETIGVTGIILTRVDGDARGGAALSMKMVTNCPIKFIACGEKLSDLDDFYPDRIAKRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 DMGD 298


>gi|260907263|ref|ZP_05915585.1| signal recognition particle-docking protein FtsY [Brevibacterium
           linens BL2]
          Length = 380

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 116/315 (36%), Positives = 180/315 (57%), Gaps = 11/315 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V +E  + + +L +  A ++  L  G+  ++S   LD+   EE+ED LI +D+GV    
Sbjct: 68  EVPTEPANRLVRLRERLAKSNSGLGRGLLSLLSRDNLDESTWEEIEDTLILADVGVDPTT 127

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW------DFSHRPHVILVVG 118
           ++V+ L  +     V   R   +V  L+ + L+ L  P              P V+LVVG
Sbjct: 128 ELVDRLRERVK---VLGTREPEEVRGLLREELIKLVDPTMDRELAVSGTGDDPAVMLVVG 184

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT +GK+++ +      V+L A DTFR+AA +QL  W  R   + V  E G+D 
Sbjct: 185 VNGAGKTTTVGKIARVLVAEDQTVLLGAADTFRAAAAEQLSTWGGRVGVETVRGEEGADP 244

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR--LDPHAPHSVLQV 236
           A++AY A ++ +++  DV++IDTAGRL N   LM  +GK+ RV  R   + H    VL V
Sbjct: 245 ASVAYSAVERGKSENTDVVLIDTAGRLQNKIGLMDELGKVKRVATRPLGEGHEIDEVLLV 304

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN ++Q ++F      TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +
Sbjct: 305 LDATTGQNGMQQAKVFAEAVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGAD 364

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF A+ F   + 
Sbjct: 365 DLAPFTAEGFVDALL 379


>gi|196232645|ref|ZP_03131497.1| signal recognition particle-docking protein FtsY [Chthoniobacter
           flavus Ellin428]
 gi|196223407|gb|EDY17925.1| signal recognition particle-docking protein FtsY [Chthoniobacter
           flavus Ellin428]
          Length = 284

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 121/284 (42%), Positives = 171/284 (60%), Gaps = 4/284 (1%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
             + +    S + +D    +ELE+ LIR+D+GV +  +I+  L  +  A+ ++ + V+  
Sbjct: 5   FFKSLIQKFSGKPVD---WDELEESLIRADLGVPMMTRIMTALQGREDAEKLTAETVVKV 61

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             E I K+L   S       + +  VILVVGVNG GKTT   KL+  +   G  VMLAA 
Sbjct: 62  AREEIIKVLPRDSVTLR-PLASKTKVILVVGVNGTGKTTSTAKLAYFLQRKGHSVMLAAA 120

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+QL +WA+R + D V  +  SD AAL YEA++ A  K V+ LI DTAGRLH 
Sbjct: 121 DTFRAAAIEQLGVWAERLNIDIVKGQYNSDPAALCYEAYQSADRKNVEFLICDTAGRLHT 180

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  +GK+ RVL + D  APH  L V+DATTG NAL+Q + FHA  G TG+I+TK+D
Sbjct: 181 KTNLMGELGKVKRVLAKADAQAPHETLLVVDATTGGNALQQAKEFHAATGLTGVIVTKLD 240

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G+ +GG ++ I     IP  F+G GE + DL  F ++ F   + 
Sbjct: 241 GSGKGGCVVAIQNELGIPTRFIGTGEKMEDLAFFESRQFVEQML 284


>gi|283956599|ref|ZP_06374078.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791848|gb|EFC30638.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 288

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 158/299 (52%), Gaps = 16/299 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
                 KG   T   +     +   ++++   + EE+   L+ +D+   + ++IV  L  
Sbjct: 1   MFNFFKKGLTKTLENIIGVKGE---NKKITKDLLEEI---LLEADVSYEIVEEIVYYLPP 54

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +   K         D+  ++    +   K  N +   +P V L++GVNG GKTT I KL+
Sbjct: 55  QNEVKK-------EDLKRVMGSYFLYEKKETNQE---KPFVELILGVNGAGKTTSIAKLA 104

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
               +   KV+L A DTFR+ AI+QLK+WA +   D V +  G D +A+A++   +A+AK
Sbjct: 105 YLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISKAKAK 164

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D +IIDTAGRL N   L   + K++R+  +    APH  + VLD T G   + Q + F
Sbjct: 165 DFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAF 224

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +    G+I+TK+DGTA+GG L  I    ++P++++GVGE + DL+ F A  +   + 
Sbjct: 225 NELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNANAYLDTLL 283


>gi|288931995|ref|YP_003436055.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Ferroglobus placidus DSM 10642]
 gi|288894243|gb|ADC65780.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Ferroglobus placidus DSM 10642]
          Length = 431

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 88/300 (29%), Positives = 147/300 (49%), Gaps = 18/300 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV- 79
            +S    +K+        ++L + +  +++  LI++D+ V   ++I + +  +  +++V 
Sbjct: 2   LSSLKDVVKKIARSSSVDKKLVEEIVRDVQRALIKADVNVRQVKEISDAIKKRALSEEVL 61

Query: 80  ----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 + ++  V E I   L  + + F  D   +   I++VG+ G GKTT   K++K  
Sbjct: 62  SGLNPREHIIKIVYEEI---LRGVGEGF--DIPLKKSKIMLVGLQGSGKTTTAAKIAKYF 116

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
            D G+K  + AGDT R AA +QLK  A++    F   +   DA  +  E  +  +    D
Sbjct: 117 KDKGMKAAVIAGDTHRPAAYEQLKQLAEQAGLGFFGKKEEKDAVKIVKEGLEALKD--YD 174

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V++IDTAGR      L+  + ++  V K      P     VLDA+ GQ A +Q E F+  
Sbjct: 175 VIVIDTAGRHALEEELIEEMKRIAEVSK------PDYKFLVLDASIGQLASKQAEAFNEA 228

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G   +++TK DGTA+GGG +       IP+ F+G GE I D E F    F + + G  D
Sbjct: 229 VGIDAIVITKFDGTAKGGGALSAARLIGIPIAFIGTGEKIEDFEKFDPAGFVSRLLGMGD 288


>gi|255327564|ref|ZP_05368631.1| signal recognition particle-docking protein FtsY [Rothia
           mucilaginosa ATCC 25296]
 gi|255295458|gb|EET74808.1| signal recognition particle-docking protein FtsY [Rothia
           mucilaginosa ATCC 25296]
          Length = 369

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 102/311 (32%), Positives = 172/311 (55%), Gaps = 6/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            +   S   + +L    A ++  L +G+  ++S  R+D  V +E+E+ L+ +D+G     
Sbjct: 60  DMPDPSAGRLVRLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLLADLGSEPTT 119

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           ++VE L  +   +  S    +  +   EL+  +   + +      S     +++V     
Sbjct: 120 RLVEALQQRVRVEGTSNPAAVKKMLREELVKIVRPDMDRELKTAGSDGNPGVVLVVGVNG 179

Query: 123 G-KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
             KTT +GK+++ M   G  ++L A DTFR+AA +QL  W DR     V SE  G+D A+
Sbjct: 180 VGKTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEKEGADPAS 239

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++A K  + + VD +++DTAGRL N S LM  +GK+ RV+++  P     VL V+DAT
Sbjct: 240 VAFDAVKAGKEQGVDTVLVDTAGRLQNKSGLMDQLGKIKRVIEKEAPVT--EVLLVIDAT 297

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN + Q ++F  +   TG+++TK+DGTA+GG ++ I     +PV  +G+GEG +DL P
Sbjct: 298 TGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLGEGPDDLAP 357

Query: 301 FVAKDFSAVIT 311
           F  + F   + 
Sbjct: 358 FDPEAFVDALL 368


>gi|157737135|ref|YP_001489818.1| signal recognition particle-docking GTPase FtsY [Arcobacter
           butzleri RM4018]
 gi|315636844|ref|ZP_07892069.1| cell division protein FtsY [Arcobacter butzleri JV22]
 gi|157698989|gb|ABV67149.1| signal recognition particle-docking GTPase FtsY [Arcobacter
           butzleri RM4018]
 gi|315478898|gb|EFU69606.1| cell division protein FtsY [Arcobacter butzleri JV22]
          Length = 309

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 19/308 (6%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K   E  S+  K       T       I  ++  ++ +    +E+E+LLI +D+   + 
Sbjct: 14  EKKIEEDKSFFSK---ALEKT----FSSIKSVVPQKK-EKISFDEVEELLIEADMEYEII 65

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +K +  L      K +  + V          ML   +   N   + +P V L++GVNG G
Sbjct: 66  EKAMNGLPDMITRKQLRHRLV----------MLFEHAPEVNL-ANTKPFVRLIIGVNGAG 114

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT I KL+ K+   G  V+L AGDTFR+AAI+QL  WA++     + ++ G DA+A+A+
Sbjct: 115 KTTTIAKLANKLKKEGKSVILGAGDTFRAAAIEQLSTWANKLEIPIIKTQQGHDASAVAF 174

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +    A A+ +D +IIDTAGRL   + L   + K+++V  +    APH  L +LD T G 
Sbjct: 175 DTISAAIARNIDDVIIDTAGRLQTQTNLNNELKKIVKVCSKAMSDAPHQKLLILDGTQGN 234

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A+ Q   FH + G  G+I+TK+DGTA+GG L  I    ++P++++G+GE  +DL  F  
Sbjct: 235 SAIAQARAFHEIVGIDGIIVTKLDGTAKGGALFSISNQLELPIFYVGIGEKQDDLVEFSP 294

Query: 304 KDFSAVIT 311
            +F   + 
Sbjct: 295 DNFVDSLL 302


>gi|224534518|ref|ZP_03675094.1| signal recognition particle protein [Borrelia spielmanii A14S]
 gi|224514195|gb|EEF84513.1| signal recognition particle protein [Borrelia spielmanii A14S]
          Length = 444

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 146/304 (48%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S     K  I  +     +++       E +++ L+ +D+ + V ++ +  ++ +   
Sbjct: 2   LESLGSNFKSFINYLSGKSTINEKNITEAVEIIKNSLVDADVNLRVVRRFLNSIIEESKG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             V        + +  V++ + K L   +   +    ++   IL++G+ G GKTT   KL
Sbjct: 62  VKVLRGIDPKSQFIKIVNDNLVKFLGGKNYELSLHPINKQSYILMLGLQGSGKTTTSVKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S ++     KV+L A DTFR+AA++QLKI   +        E   D   +   + K A++
Sbjct: 122 SLRLKKENRKVLLVAADTFRAAAVEQLKILGSQIGVPVFSLEGEKDPIKIVKASMKFAKS 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  D +I+DT GRL   S+L+  I K+  +L+      P   + V+D+  GQ A+   + 
Sbjct: 182 EFFDSVIVDTRGRLEVESLLVEEIKKIKGILQ------PTETILVVDSMMGQVAVNIAKE 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG I +K D   RGG ++      ++P+ F+GVGE I DL+ F  +  ++ I 
Sbjct: 236 FNENVGLTGAIFSKFDSDTRGGAILSFKSICEVPIKFVGVGEKIEDLDSFYPERIASRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|145503400|ref|XP_001437676.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404829|emb|CAK70279.1| unnamed protein product [Paramecium tetraurelia]
          Length = 507

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 136/305 (44%), Gaps = 15/305 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   +  +  +  +D+ + +    E+   L+++D+     +K+ E++  +   
Sbjct: 3   LAELGKSINAALQKLSKAPVVDEALVDQILGEIAMALLKADVNAKFIKKLREDVKMEFKL 62

Query: 77  KDVSVQRVLYDVSELIHK----MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            +         + + +      ML    KPF      + +VI+ VG+ G GKTT   K +
Sbjct: 63  CEEENINHQKLIQKAVVDGLTRMLESDRKPFQPK-KGKQNVIMFVGLQGSGKTTTCTKYA 121

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G KV L   DTFR+ A DQLK  A +    F  S   +D   +A E     + +
Sbjct: 122 YYYQKKGWKVALVCADTFRAGAFDQLKQNATKVRVPFYGSYTEADPVQIAQEGVNVFKKE 181

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             +++I+DT+GR    + L   + ++   +K      P  ++ V+D++ GQ    Q   F
Sbjct: 182 AFEIIIVDTSGRHKQENDLFEEMKQVEAAVK------PDDIVFVMDSSIGQACFDQALAF 235

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                   +I+TK+DG A+GGG +  V   + P+ F+G GE  +DLE F A  F   + G
Sbjct: 236 KKAVNVGSVIITKLDGHAKGGGALSAVAATESPIVFIGEGEHFDDLESFEASSFVRRLLG 295

Query: 313 CLDYG 317
             D  
Sbjct: 296 LGDIN 300


>gi|260941516|ref|XP_002614924.1| hypothetical protein CLUG_04939 [Clavispora lusitaniae ATCC 42720]
 gi|238851347|gb|EEQ40811.1| hypothetical protein CLUG_04939 [Clavispora lusitaniae ATCC 42720]
          Length = 569

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 143/321 (44%), Gaps = 32/321 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKR----Y 75
            A    +L+  +  + S    +   + + +   L+ SD+ V +  ++ + +  K      
Sbjct: 23  LADLGSRLRNALGSVESGSEDEVQNMIKNICSALLESDVNVRLVARLRDNIRQKIAVEIK 82

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLS-------KPFNWDFSHRP--------------HVI 114
           + + S       + +++   L  L        KP     +                 HVI
Sbjct: 83  SANESSANKRKKLQKIVFDELCGLVDSHEEPPKPKKLSQTKSVAKHGKKPKKIAAESHVI 142

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A +++  F  S +
Sbjct: 143 MFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKSNIPFYGSYL 202

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            +D   +AYE  K+ +  K D++I+DT+GR      L   + ++   ++      P   +
Sbjct: 203 ETDPVKVAYEGVKKFKEDKFDIIIVDTSGRHKQEQSLFNEMVQISEAVQ------PTQTI 256

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+DA+ GQ A  Q + F   +    +I+TKMDG A+GGG I  V   + P+ F+G GE 
Sbjct: 257 MVMDASIGQAAEGQAKAFKESSNFGSIILTKMDGHAKGGGAISAVAATETPIVFIGTGEH 316

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           + D E F    F + + G  D
Sbjct: 317 VGDFEVFKPSTFISKLLGIGD 337


>gi|293381178|ref|ZP_06627186.1| signal recognition particle-docking protein FtsY [Lactobacillus
           crispatus 214-1]
 gi|290922218|gb|EFD99212.1| signal recognition particle-docking protein FtsY [Lactobacillus
           crispatus 214-1]
          Length = 432

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 172/312 (55%), Gaps = 9/312 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S+++          K   G   T+      +    +  R +D+   ++LEDLLI SD+G 
Sbjct: 116 SDEEPTESQEQLYEK---GLEKTNKGFGARLNAFFAKFRTVDEDFFDDLEDLLIESDVGY 172

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVIL 115
             A+++ +EL  +   ++   +  L  V      +L  K      +   ++   +P+V L
Sbjct: 173 ETAEQLTDELREEAKLQNAKSRDELKRVIVEKLVDLYDKGGNSEDEQLTYNAEAKPNVYL 232

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL  W  R     V  +  
Sbjct: 233 LVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVPVVTGKEK 292

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++ Y+A ++A  +K D L++DTAGRL N   LMA + K+ R +K+L P  P   L 
Sbjct: 293 ADPASVVYDATERAIREKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPDQPTETLL 352

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE  
Sbjct: 353 VLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVKLVGLGERA 412

Query: 296 NDLEPFVAKDFS 307
            DL  F A +++
Sbjct: 413 EDLADFDAANYA 424


>gi|70607071|ref|YP_255941.1| signal recognition 54 kDa protein [Sulfolobus acidocaldarius DSM
           639]
 gi|73920792|sp|O07853|SRP54_SULAC RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|68567719|gb|AAY80648.1| signal recognition 54 kDa protein [Sulfolobus acidocaldarius DSM
           639]
          Length = 444

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 13/298 (4%)

Query: 26  LKLKEGITDIISSRRLDDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKD---- 78
             L++ +   + S   +  V E   EL+ +LI++D+ V + + + + +  +   +     
Sbjct: 3   DGLRDAVRKFLGSSDYEKAVNEFIKELQIILIKADVNVRLVKDLTDRIKKRITEEKPPSA 62

Query: 79  -VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
               +  +  V + + ++     +P        P++I++VGV G GKTT  GKL+     
Sbjct: 63  IEKREWFISIVYDELSRLFGGDKEP-EVMPKKLPYIIMLVGVQGSGKTTTSGKLALFYKK 121

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            G KV L A D +R AA +QL     + +          +   +A    ++   +K++++
Sbjct: 122 KGYKVGLVAADIYRPAAYEQLIQIGQQINIPVYGEPGNKNPIEIATNGLEKFLKEKMNIV 181

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           IIDTAGR             +  +    D   P  V+ V+DA+ GQ A      FH  + 
Sbjct: 182 IIDTAGRHG----YGEEASLLEEMKSMYDKIHPDEVILVIDASIGQKAYDLASRFHQASP 237

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
              LI++KMDGTA+GGG +  V+     + F+G GE +++LE F  + F + + G  D
Sbjct: 238 IGSLIVSKMDGTAKGGGALSAVIATGAQIKFIGTGEKLDELEVFNPRRFVSRLLGLGD 295


>gi|159041443|ref|YP_001540695.1| signal recognition particle-docking protein FtsY [Caldivirga
           maquilingensis IC-167]
 gi|157920278|gb|ABW01705.1| signal recognition particle-docking protein FtsY [Caldivirga
           maquilingensis IC-167]
          Length = 302

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 93/311 (29%), Positives = 154/311 (49%), Gaps = 22/311 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVE 68
              +L   F+S    L + I D ++ R L +     +  E E+ LI  D+ +  A+ ++ 
Sbjct: 1   MFNRLKSAFSS----LVKAIGDAVTQRELTEDDVNKLLGEFEERLIEYDVALDTAEALIS 56

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--------PFNWDFSHRPHVILVVGVN 120
           EL  K     V        V  L+   LM L           F      RP V+L +G N
Sbjct: 57  ELKAKLIGVKVPRFSDNDYVKALVRDTLMNLLSSIPDVDFDEFIKGVKKRPIVLLFLGPN 116

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT I KL+  +   G+ V+ AA DT+R+ A++QL+  A +     +    GSD A+
Sbjct: 117 GYGKTTTIAKLTNMLLKRGMSVVWAAADTYRAGAVEQLEGHAAKLGVRVIKHPYGSDPAS 176

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY+A + A+A+ + V++IDTAGR+H +  LM  + K+ RV       +P + + ++DA 
Sbjct: 177 VAYDAIEHAKARGISVVMIDTAGRMHTDRNLMEELRKVHRV------SSPDASIFIVDAL 230

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            G +A+     +        +++TK+D   +GG ++ ++   K P+ FLG G+G +DL  
Sbjct: 231 MGNDAVDVARTYSKYIPIDFVVVTKVDAYVKGGVILTLLYELKKPIIFLGTGQGYDDLIK 290

Query: 301 FVAKDFSAVIT 311
           F   DF   + 
Sbjct: 291 FNKLDFINKLL 301


>gi|58337571|ref|YP_194156.1| cell division protein [Lactobacillus acidophilus NCFM]
 gi|227904213|ref|ZP_04022018.1| signal recognition particle docking protein FtsY [Lactobacillus
           acidophilus ATCC 4796]
 gi|58254888|gb|AAV43125.1| cell division protein [Lactobacillus acidophilus NCFM]
 gi|227868232|gb|EEJ75653.1| signal recognition particle docking protein FtsY [Lactobacillus
           acidophilus ATCC 4796]
          Length = 431

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 109/298 (36%), Positives = 172/298 (57%), Gaps = 12/298 (4%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   T+      +    +  R +D+   ++LEDLLI SD+G   A+++ EEL  +   +
Sbjct: 129 KGLEKTNKGFGARLNAFFAKFRTVDEDFFDDLEDLLIESDVGYETAEQLTEELREEAKLQ 188

Query: 78  DVSVQRVLYDVSELIHKMLMPL--------SKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +   +    ++ ++I + L+ L         +   ++   +P+V L VGVNG GKTT IG
Sbjct: 189 NAKSRD---ELKQVIVEKLVDLYDKGGNNKDEKLEYNSDDKPNVYLFVGVNGAGKTTTIG 245

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+K+  D G  V+LAA DTFR+ A++QL  W  R     V  +  +D A++ Y+A ++A
Sbjct: 246 KLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVPVVTGKEKADPASVVYDATERA 305

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +KVD L++DTAGRL N   LMA + K+ R +++L P  P   L VLD +TGQNAL Q 
Sbjct: 306 IKEKVDYLLVDTAGRLQNKKNLMAELEKIQRTIQKLLPDQPTETLLVLDGSTGQNALLQA 365

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE   DL  F A +++
Sbjct: 366 KDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVKLVGLGEKPEDLADFDAANYA 423


>gi|296129311|ref|YP_003636561.1| signal recognition particle-docking protein FtsY [Cellulomonas
           flavigena DSM 20109]
 gi|296021126|gb|ADG74362.1| signal recognition particle-docking protein FtsY [Cellulomonas
           flavigena DSM 20109]
          Length = 399

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 111/293 (37%), Positives = 169/293 (57%), Gaps = 11/293 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L   +  ++S   L +   +ELE+ L+ +D+G     ++++ L T+     +        
Sbjct: 107 LGTRLLGVLSRDHLTEDDWDELEETLLLADVGAGPTDELIDALRTRVRVDGLRDGEQARA 166

Query: 88  V-SELIHKMLMP------LSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           V  E +  ++ P       ++P   +   R P V+LVVGVNG GKTT +GKL++ +   G
Sbjct: 167 VLREQLLALVDPSLDRTLATEPTTAEDGQRLPAVVLVVGVNGTGKTTTVGKLARVLVADG 226

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLI 198
            +V+L A DTFR+AA DQL+ W  R     V S+  G+D AA+A++A +   A   DV++
Sbjct: 227 RRVVLGAADTFRAAAADQLQTWGSRVGVPTVRSDRDGADPAAVAFDAVRTGVADGADVVL 286

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL N + LM  +GK+ RV+ R  P     VL VLDATTGQN L Q  +F  VAG 
Sbjct: 287 VDTAGRLQNKAGLMDELGKITRVITRTAP--LSEVLLVLDATTGQNGLNQARVFGEVAGV 344

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF  + F   + 
Sbjct: 345 TGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFDPEAFVDGLL 397


>gi|150866311|ref|XP_001385860.2| Signal recognition particle 54 kDa protein [Scheffersomyces
           stipitis CBS 6054]
 gi|149387567|gb|ABN67831.2| Signal recognition particle 54 kDa protein [Scheffersomyces
           stipitis CBS 6054]
          Length = 561

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 149/321 (46%), Gaps = 34/321 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV---REELEDLLIRSDIGVAVAQKIVEELLTKRYA- 76
            A    +L+  ++ + S+   D+ +    +++   L+ SD+ + +  K+ + +  K    
Sbjct: 3   LADLGSRLRGALSSVESAS--DEEINQMIKDVCTALLESDVNIKLVVKLRDNIKQKVKTD 60

Query: 77  --KDVSVQRVLYDVSELIHKMLMPLS-------KPFNWDFSHRP-------------HVI 114
              + S       + ++I+  L+ L        KP     S +              H+I
Sbjct: 61  VTSEESAINKRKKLQKIIYDELVGLVDSHEEPPKPKKLSTSTKVINGKKKKVAKTNSHII 120

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A + S  +  S +
Sbjct: 121 MFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKASIPYYGSYL 180

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +AYE   + +++K D++I+DT+GR      L   + ++  +++      P   +
Sbjct: 181 EQDPVKIAYEGVTKFRSEKFDIIIVDTSGRHRQEHQLFQEMVQIGEMIQ------PTQTI 234

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+D + GQ A  Q + F   +    +I+TKMDG A+GGG I  V   K P+ F+G GE 
Sbjct: 235 MVMDGSIGQAAESQAKAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEH 294

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           I DLE F    F + + G  D
Sbjct: 295 IGDLEIFKPTTFISKLLGIGD 315


>gi|67902518|ref|XP_681515.1| SR54_ASPNG SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN HOMOLOG
           [Aspergillus nidulans FGSC A4]
 gi|40739794|gb|EAA58984.1| SR54_ASPNG SIGNAL RECOGNITION PARTICLE 54 KD PROTEIN HOMOLOG
           [Aspergillus nidulans FGSC A4]
 gi|259481033|tpe|CBF74199.1| TPA: hypothetical protein similar to srpA gene product (Broad)
           [Aspergillus nidulans FGSC A4]
          Length = 542

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 137/313 (43%), Gaps = 23/313 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-----------GVREELEDLLIRSDIGVAVAQKIVEE 69
                 ++   + D+  S  LD+            + +E+   L+ +D+ V + Q + + 
Sbjct: 3   LQDLGRRINAAVNDLTRSPNLDEKMLILGVKAFEEMLKEICAALLSADVNVRLVQSLRKS 62

Query: 70  LLTKRYAKDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +        +        V +      +  ++ P ++PF      R +VI+ VG+ G GK
Sbjct: 63  IKASVNFASLPAAVNKKRVIQKAVFDELVALVNPHAEPFRPK-KGRSNVIMFVGLQGAGK 121

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT   KL++     G K  L   DTFR+ A DQLK  A +    +  S   +D A +A E
Sbjct: 122 TTTCTKLARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAVVAAE 181

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              + + ++ +++I+DT+GR      L   + ++   +       P   + VLD T GQ 
Sbjct: 182 GVAKFKKERFEIIIVDTSGRHKQEEQLFTEMTQIQTAVT------PDQTILVLDGTIGQA 235

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A  Q   F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K
Sbjct: 236 AEVQSSAFKATADFGAIIITKTDGHAAGGGAISAVAATHTPIIFLGTGEHMMDLERFEPK 295

Query: 305 DFSAVITGCLDYG 317
            F   + G  D  
Sbjct: 296 AFIQKLLGMGDMA 308


>gi|282162678|ref|YP_003355063.1| putative signal recognition particle receptor [Methanocella
           paludicola SANAE]
 gi|282154992|dbj|BAI60080.1| putative signal recognition particle receptor [Methanocella
           paludicola SANAE]
          Length = 347

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 154/284 (54%), Gaps = 14/284 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIH 93
           I+S + L +G   ELE  L+ SD+ + VA+ I++ +      +     R   D++E  + 
Sbjct: 69  ILSEKDL-EGPLWELEMALLESDVALPVAESIIDRIRKDLSGQHKKFLRSTGDIAEDALR 127

Query: 94  KMLMPLSKPFNWDFS------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             ++ +      DF        +P +++  GVNG GKTT I KL++++ ++ + V++AAG
Sbjct: 128 DAILTILSAHTLDFDDYVKGHDKPVIVVFTGVNGTGKTTTIAKLAERLKESNVGVVIAAG 187

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+ AI+QL+  ADR     +  + GSD AA+ Y+A   A++ K DV++ DTAGRLH 
Sbjct: 188 DTFRAGAIEQLQKHADRLGVKMIKHDQGSDPAAVIYDAVAYAKSNKKDVVLADTAGRLHT 247

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           N  LM  + K+ R++       P  V+ V +A  G +A+ + ++F+     +G I+TK D
Sbjct: 248 NVNLMEQLKKISRII------RPDLVIFVDEAIAGNDAVERAKLFNDAVPISGSILTKAD 301

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             ++GG  I I      P+ FLGVG+   DL  F    F   + 
Sbjct: 302 ADSKGGAAISIAHITGKPILFLGVGQEYKDLRKFDPDWFVERLL 345


>gi|237753415|ref|ZP_04583895.1| signal recognition particle protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375682|gb|EEO25773.1| signal recognition particle protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 446

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 144/294 (48%), Gaps = 13/294 (4%)

Query: 28  LKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           + E   + IS  R  D         +EL+  L++SD+   V ++++ E+  K     +  
Sbjct: 5   ITESFQNAISKIRFQDDEKALKRALDELKKALLKSDVHYKVLKELLAEVEKKTKLAGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
              L  + E ++ +L              P ++L+ G+ G GKTT   KL+  +     K
Sbjct: 65  DSFLNALKESLNTILTAPGNYGFIFAPKPPTIVLMAGLQGSGKTTTTAKLANYLKGKQKK 124

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+LAA D  R AA++QL+  A +   +F     G  A  +A EA K+A     DVL++DT
Sbjct: 125 VLLAACDLQRLAAVEQLRQLAAQVEVEFF-HLEGKSAVEIATEAKKKAIDGLYDVLLVDT 183

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL  +  LM  +  +   +       P+ VL V+D+ +GQ+ ++    FH     +G+
Sbjct: 184 AGRLAIDEALMRELQSIKSAIN------PNEVLYVVDSLSGQDGVKSAATFHEKMDLSGV 237

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +++K DG ++GG  + I     IP+ F+GVGE I DLE F+ +     + G  D
Sbjct: 238 VLSKFDGDSKGGIALSIAHQLGIPLRFIGVGEKIADLEVFIPERIVGRLMGAGD 291


>gi|289581472|ref|YP_003479938.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Natrialba magadii ATCC 43099]
 gi|289531025|gb|ADD05376.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Natrialba magadii ATCC 43099]
          Length = 464

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 140/303 (46%), Gaps = 14/303 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L+  +  +    R+ +     + +E++  L+ +D+ V++  ++ + +  +   
Sbjct: 3   LDDLGSSLRGSLDKLRGKSRISEEDVEEIVKEIQRSLLSADVDVSLVMELSDNIKERALE 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++        D V  ++++ L+ L      +       IL+ G+ G GKTT   K++   
Sbjct: 63  EEPPAGTPARDFVLRIVYEELVGLIGDST-ELPLEEQTILLAGLQGSGKTTSSAKMAWWF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  GL+  +   DTFR  A DQ K  A R   DF  +    D   +A +  +       D
Sbjct: 122 STKGLRPAIIQTDTFRPGAYDQAKEMAGRAEVDFYGNPDNDDPVEIARKGLEATSE--AD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I+DTAGR      L+A I ++  V++      P + L VLDA  GQ A  Q + F   
Sbjct: 180 VHIVDTAGRHALEDDLIAEIEQIEGVVE------PDTSLLVLDAAIGQGAKEQAQQFDES 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+++TK+DGTA+GGG +  V      + FLG GE + D+E F    F + + G  D
Sbjct: 234 IGIDGVVITKLDGTAKGGGALTAVDQTDSSIAFLGTGEEVQDVERFEPDSFISRLLGMGD 293

Query: 316 YGE 318
            G+
Sbjct: 294 LGQ 296


>gi|255003289|ref|ZP_05278253.1| signal recognition particle protein (ffh) [Anaplasma marginale str.
           Puerto Rico]
          Length = 451

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S +  +   +  +   R + D     V E++   L+ +D+ + V ++ + ++ +K   
Sbjct: 2   FDSLAKGIASAVQKLGGRREISDKDFDLVLEDVTQALLDADVNLMVVEQFIGDVKSKIVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  + E + ++L       +      P  I++VG+ GVGKTT   K+
Sbjct: 62  GEVVKGVLPEQMIIKLMEECLIEVLGNEKSELDLS-GKAPVAIMMVGLQGVGKTTNTVKV 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+  +  KV++A+ D +R AA +QL + A     D +    G     +A  A K+A+ 
Sbjct: 121 AFKLKKSEKKVLVASLDVYRPAAQEQLGVLAQGVGVDSLPIVEGELPLDIAKRAMKEAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRLH +  ++  +  + + +       P+  + V+D   GQ+A+  V  
Sbjct: 181 GGYDVVIVDTAGRLHIDQEMIGELQLIKKEVS------PNETILVVDCMMGQDAVEVVRG 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     TG I T+ DG +RGG ++ + +    P+ F+  GE   DL+ F     +  I 
Sbjct: 235 FHDKLNLTGTIFTRADGDSRGGAILSMKMVSGCPIKFMSTGEKPEDLDDFYPDRVARRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 NMGD 298


>gi|15639407|ref|NP_218856.1| signal recognition particle protein (ffh) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025649|ref|YP_001933421.1| signal recognition particle protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|3322699|gb|AAC65403.1| signal recognition particle protein (ffh) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018224|gb|ACD70842.1| signal recognition particle protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059804|gb|ADD72539.1| signal recognition particle protein [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 452

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 141/312 (45%), Gaps = 18/312 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              +L+  F      L    T  IS R + + V E ++  L+ +D+ V V ++ V + + 
Sbjct: 1   MFEQLSASFKRIVGALGGRAT--ISERNIQEAV-ESIKRALLDADVHVRVVRRFVNQTIQ 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
               + V       Q+ +  V E +   L   ++  +        +IL++G+ G GKTT 
Sbjct: 58  HAQGQTVLASVSPAQQFIKIVHERLTAFLGEHTRSLHLKGPDTQSIILLLGLQGSGKTTS 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV----CSEIGSDAAALAY 183
             KL+  + DAG   +LAA D  R+AA  QL +                E    A   A 
Sbjct: 118 AAKLAAYLKDAGRSPLLAACDHVRAAASAQLAVLGTHIGVPVYQHALPHEQQPCALDTAR 177

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A + A++   DVLIIDTAGRLH ++ LM  +  +   L       P   L V DA TGQ
Sbjct: 178 GALQYARSHGNDVLIIDTAGRLHVDAALMQELILLKETL------VPVETLLVADALTGQ 231

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
             +R  E FHA  G +G++++K D   RGG  + +      P+ F+G GE   D EPF  
Sbjct: 232 TVVRIAEEFHAAVGISGVVLSKFDSDTRGGAALSLKSITGQPLLFVGTGERPQDFEPFHP 291

Query: 304 KDFSAVITGCLD 315
           +  +  I G  D
Sbjct: 292 ERAAGRILGMGD 303


>gi|170088384|ref|XP_001875415.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650615|gb|EDR14856.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 543

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 149/311 (47%), Gaps = 22/311 (7%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    +L   ++ +    I   ++ D   +E+   L+ SD+ V     + +++  K  A
Sbjct: 3   LADLGRRLNAALSSLNKAPIVDEKVLDATLKEITAALLESDVNVKFVASLRQKVKAKVKA 62

Query: 77  ----------KDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
                     K+ + + ++   V + +  ++ P  +P+      +P+VI+ VG+ G GKT
Sbjct: 63  TIESAAADKSKETNRKNLIQKAVFDELVALVDPGVEPYKPK-KGQPNVIMAVGLQGNGKT 121

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T   KL+      G K  +   DTFR+ A DQ +  A +    +  S   +D  ++A + 
Sbjct: 122 TTCTKLAVHYQKRGFKSAIVCADTFRAGAFDQTRQSATKAKVAYFGSYTETDPVSIAAQG 181

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             + + ++ DV+I+DT+GR    S L   + ++   +K      P   + +LDA+ GQ A
Sbjct: 182 VAKFKKERFDVIIVDTSGRHKQESELFEEMVQIGEAVK------PDMTVLILDASIGQAA 235

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
             Q   F   A    +I+TKMDG A+GGG I  V   K P+ FLGVGE ++DL+ F  + 
Sbjct: 236 EAQSRAFKESANFGAIIVTKMDGHAKGGGAISAVAATKTPIIFLGVGEHLHDLDRFSPQP 295

Query: 306 FSAVITGCLDY 316
           F + + G  D 
Sbjct: 296 FISKLLGLGDM 306


>gi|320096198|ref|ZP_08027786.1| cell division protein FtsY [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319976863|gb|EFW08618.1| cell division protein FtsY [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 305

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 174/306 (56%), Gaps = 11/306 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +++L    A  S  L   I DI+S   L     EE+E+ L+ +D+G+    +++E L  +
Sbjct: 1   MQRLRARLA-ASGALGRAIVDILSRGELKAADWEEIEESLLIADLGLEATDQLMEALKRR 59

Query: 74  RYAKDVSVQRVLY-DVSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTT 126
              + V     +   + E +  ++ P             D    P  +L+VGVNG GKTT
Sbjct: 60  VAVEKVGDTAGIRRILREELLALVDPAMDRSLRLDKPEADGRALPAAVLMVGVNGTGKTT 119

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEA 185
            +GKL++ +   G  V+L A DTFR+AA DQL  W  R   D V SE  G+D A++A+EA
Sbjct: 120 TVGKLARVLVADGRTVLLGAADTFRAAAADQLATWGQRVGVDVVRSEREGADPASVAFEA 179

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K+  ++ VDV+++DTAGRL N S LM  +GK+ RV+ R  P     VL VLDATTGQN 
Sbjct: 180 VKEGASRGVDVVVVDTAGRLQNKSTLMDELGKIKRVMDRQAPVG--EVLLVLDATTGQNG 237

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L+Q  +F    G TG+++TK+DG+A+GG ++ +     +PV F+G+GEG +DL PF  + 
Sbjct: 238 LQQALVFAEAVGVTGIVLTKLDGSAKGGIVVSVQRQLGVPVKFVGLGEGADDLAPFDPEG 297

Query: 306 FSAVIT 311
           F   I 
Sbjct: 298 FVDAIV 303


>gi|312984416|ref|ZP_07791751.1| signal recognition particle-docking protein FtsY [Lactobacillus
           crispatus CTV-05]
 gi|310894191|gb|EFQ43278.1| signal recognition particle-docking protein FtsY [Lactobacillus
           crispatus CTV-05]
          Length = 432

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 171/312 (54%), Gaps = 9/312 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S+++          K   G   T+      +    +  R +D+   ++LEDLLI SD+G 
Sbjct: 116 SDEEPTESQEQLYEK---GLEKTNKGFGARLNAFFAKFRTVDEDFFDDLEDLLIESDVGY 172

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVIL 115
             A+++  EL  +   ++   +  L  V      +L  K      +   ++   +P+V L
Sbjct: 173 ETAEQLTNELREEAKLQNAKSRDDLKRVIVEKLVDLYDKGGNSEDEQLTYNAEAKPNVYL 232

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VGVNG GKTT IGKL+K+  D G  V+LAA DTFR+ A++QL  W  R     V  +  
Sbjct: 233 LVGVNGAGKTTTIGKLAKRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVPVVTGKEK 292

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++ Y+A ++A  +K D L++DTAGRL N   LMA + K+ R +K+L P  P   L 
Sbjct: 293 ADPASVVYDATERAIREKADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPDQPTETLL 352

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  +G+GE  
Sbjct: 353 VLDGSTGQNALLQAKDFDKTTELTGLVLTKLDGSSKGGVVLAIRNEMNLPVKLVGLGERA 412

Query: 296 NDLEPFVAKDFS 307
            DL  F A +++
Sbjct: 413 EDLADFDAANYA 424


>gi|123420898|ref|XP_001305857.1| SRP54-type protein [Trichomonas vaginalis G3]
 gi|121887399|gb|EAX92927.1| SRP54-type protein, putative [Trichomonas vaginalis G3]
          Length = 490

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 129/304 (42%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 KL   I  +  S+++D+ V      E+   LI +D+   +     + L  K   
Sbjct: 2   LQDLGDKLIGSIKKLSESKKIDETVYRNFMIEISKSLIAADVSKEIVFSFSKRLREKINF 61

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            ++        V E      +  ++ P    +      + ++ ++VG+ G GKTT + KL
Sbjct: 62  NEIPPGLSAKRVIEKAVFNELVTLINPGMTAYK-PIKKKLNIFMMVGLQGAGKTTTVTKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  + A DTFR+ A +QL   A      +      SD   +A +   + + 
Sbjct: 121 ANYYKRRNWKTGVIAADTFRAGAREQLMQNAQTARIPYFVDFTESDPVQVALKGIDKFKK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K ++ IIDT+GR      L A +  +   +       P  ++ V+D T GQ A  Q   
Sbjct: 181 EKFEIAIIDTSGRHMQEEALFAEMKSLAENV------VPDEIIFVMDGTIGQAAYDQALG 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G   +I+TK+D  A+GGG +  V   + P+ F+G GE   DLE F    F + + 
Sbjct: 235 FKNAVGVGSIIITKLDSNAKGGGALSAVAATQSPISFIGSGENFTDLEWFDPSSFVSRLL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GIAD 298


>gi|1711514|sp|P49970|SR543_HORVU RecName: Full=Signal recognition particle 54 kDa protein 3;
           Short=SRP54
 gi|1020004|gb|AAA79356.1| signal recognition particle 54 kDa subunit [Hordeum vulgare]
          Length = 493

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 137/285 (48%), Gaps = 16/285 (5%)

Query: 41  LDDGVREE----LEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVLYD-VSEL 91
           +D+ V  E    +   L++SD+       +   +      +  A   + +R++   V + 
Sbjct: 22  VDESVLRECLNEIARALMQSDVRFKTVCDLQANIRKTVNLEALAAGTNKRRIIETSVGKE 81

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           + KML    KP       +P+V++ VG+ G GKTT   K +      G K  L   DTFR
Sbjct: 82  LCKML-DTGKPAFVPKKGKPNVVMFVGLQGSGKTTTCTKYAHYHQRKGFKPSLVCADTFR 140

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           + A DQLK  A +    F  S + SD   +A E  ++ + +K D++IIDT+GR    + L
Sbjct: 141 AGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLEKFRQEKSDLIIIDTSGRHMQEAAL 200

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
              + ++    K      P  V+ V+D + GQ A  Q + F   A    +I+TK+DG A+
Sbjct: 201 FEEMRQVAEATK------PDLVIFVMDGSIGQAAFDQAQAFKQSASVGAVIVTKLDGHAK 254

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           GGG +  V   K PV F+G GE I+D + F  + F A + G  D 
Sbjct: 255 GGGALSAVAATKSPVIFIGTGEHIDDFDVFNVEPFVARLLGRGDL 299


>gi|169630322|ref|YP_001703971.1| cell division protein FtsY-like protein [Mycobacterium abscessus
           ATCC 19977]
 gi|169242289|emb|CAM63317.1| Cell division protein FtsY homolog [Mycobacterium abscessus]
          Length = 458

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 173/304 (56%), Gaps = 5/304 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             + +L    AS+   +  G+  ++ +  LD+   EE+ED L+ +D+G AV   IV+ L 
Sbjct: 157 GRLDRLRGRLASSQNAVGRGLLGLLGAGDLDEESWEEVEDTLLIADLGTAVTASIVDRLR 216

Query: 72  TKRYAKDVSVQRVLYDV-SELIHKMLMP-LSKPFN-WDFSHRPHVILVVGVNGVGKTTVI 128
           ++  A+ V  +     +  E++   L P L +       + +P V+L+VGVNG GKTT +
Sbjct: 217 SEMAARSVRTEAQARALLREVLIDELQPELDRSIKALPHNDKPSVLLIVGVNGTGKTTTV 276

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++ +   G +V+L A DTFR+AA DQL+ W  R  A  V    G+D A++A++A   
Sbjct: 277 GKLARVLVADGRRVVLGAADTFRAAAADQLQAWGQRVGAQVVRGAEGADPASVAFDAVDA 336

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
              +  DV+++DTAGRLH  + LM  +GK+ RV++R        VL VLD+T GQN L Q
Sbjct: 337 GIREGADVVVVDTAGRLHTKTGLMDELGKIKRVVERRAD--VDEVLLVLDSTIGQNGLAQ 394

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F  V   TG+ +TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    F  
Sbjct: 395 ARVFADVVDITGVALTKLDGTAKGGIVFHVQRELGVPVKLVGLGEGPDDLAPFEPPAFVD 454

Query: 309 VITG 312
            + G
Sbjct: 455 ALLG 458


>gi|171185970|ref|YP_001794889.1| GTP-binding signal recognition particle [Thermoproteus neutrophilus
           V24Sta]
 gi|226734219|sp|B1Y9L4|SRP54_THENV RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|170935182|gb|ACB40443.1| GTP-binding signal recognition particle SRP54 G- domain
           [Thermoproteus neutrophilus V24Sta]
          Length = 433

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 148/303 (48%), Gaps = 18/303 (5%)

Query: 24  TSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKI----VEELLTKRY 75
            S    + +  I     +D+   +    E++  L+++D+ + + +      V+ +  ++ 
Sbjct: 4   LSEVFGKLVEKIRGVSYIDEATLQDLSREIQRALLKADVPLDMVKAFTDAAVKRIKEEKP 63

Query: 76  AKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
              +  +  L Y + E + K+L    +P  +  + +P+V+L++GV G GKTT   KL+K 
Sbjct: 64  PAGIPPREYLLYVLYEELVKLLGG-EQPPEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKL 122

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           +   G KV L   DT R AA DQL+  A++    F     G DA  +A    +  +    
Sbjct: 123 LVKRGYKVGLVETDTVRPAAFDQLRQLAEKIGVPFYGERDGKDAVEIARRGVQNLKNL-- 180

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+I+DTAGR  N   L+  +  +   +       P  V+ V+DAT G+ A  Q E F  
Sbjct: 181 DVVIVDTAGRHRNEEALLQEVKAIYEAVS------PDEVVLVIDATVGKLAAAQAEAFMR 234

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
                 +I+TKMD TARGGG +  V      V F+GVGE +++LE F+ + F A + G  
Sbjct: 235 YLPIHSVIITKMDSTARGGGALAAVAKTGAKVKFIGVGEDVDELEMFIPRKFVARVLGMG 294

Query: 315 DYG 317
           D  
Sbjct: 295 DLD 297


>gi|313681624|ref|YP_004059362.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154484|gb|ADR33162.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 448

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 11/299 (3%)

Query: 21  FASTSLKLKEGITDII---SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           F + +      I  I      + L      EL+  L+++D+   V +++++ +  +    
Sbjct: 2   FDTLTESFTSAIRKIRFHDDEKALTKA-LGELKKALLKADVNHKVVKELIDSVEIQTKQN 60

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS- 136
            V   + L  + + ++ +L    K         P VIL+ G+ G GKTT  GKL+  +  
Sbjct: 61  GVGKDQFLDALRKSLYALLDVKGKSGFVYAPVAPTVILMTGLQGSGKTTTTGKLANWLKT 120

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               +V++ A D  R AA++QL+        +    +   +   +   A + A+   VDV
Sbjct: 121 RQKKRVLVVAADLQRLAAVEQLRQVCGAIDVELYADDATKNPVEVVKAALEHAKKVLVDV 180

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDTAGRL  +  LM  + ++  V        PH +  V D+ +GQ+A+R    F+   
Sbjct: 181 VLIDTAGRLAIDDELMGELAEVKAVAN------PHEIFYVADSLSGQDAVRTAATFNEKI 234

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  G+I+TK DG ++GG  + I    ++P+ F+G GE + DLE F+       + G  D
Sbjct: 235 GIDGVILTKYDGDSKGGVALGIASQIQVPLRFIGAGEKMEDLEIFLPDRIVNRLMGLGD 293


>gi|327401640|ref|YP_004342479.1| signal recognition particle-docking protein FtsY [Archaeoglobus
           veneficus SNP6]
 gi|327317148|gb|AEA47764.1| signal recognition particle-docking protein FtsY [Archaeoglobus
           veneficus SNP6]
          Length = 376

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 161/309 (52%), Gaps = 22/309 (7%)

Query: 19  KGFASTSLKLKEGITDIISSRRLD------DGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           K      + +KE ++ +I  R +       D +  ELE +L+ SD+   V ++I ++L  
Sbjct: 73  KKLVKPRIGIKEKVSALILRREIVIDEGKLDEILPELEIILLESDVAFEVVEEISDKLRQ 132

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS---------HRPHVILVVGVNGV 122
           +   +   V   L D V + +  ++  +     +DF           +P  I+ VGVNG 
Sbjct: 133 RLVGRTKKVGEKLSDIVLDELRAIIKEILDTNKFDFDAYIEEALKEKKPLNIIFVGVNGT 192

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I KL+K+++D G  V+LAAGDTFR+ AI+QL+  A+R     +  + G+D AA+ 
Sbjct: 193 GKTTTIAKLAKRLTDRGYSVVLAAGDTFRAGAIEQLEEHANRLGVKLIKHKAGADPAAVI 252

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A   A++K +DV++ DTAGR+H    L+  + K+ RV K      P   + V ++  G
Sbjct: 253 YDAIAHAESKGIDVVLADTAGRMHTKKNLIDQLEKIKRVTK------PDLTIFVDESIAG 306

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            +A+ +  MF+   G  G I+TK+D   +GG  I I      PV F+GVG+  +DL  F 
Sbjct: 307 NDAVERARMFNEAVGIDGSILTKLDADPKGGTAISISYVTGKPVLFIGVGQEYDDLVKFD 366

Query: 303 AKDFSAVIT 311
           +      I 
Sbjct: 367 SDWLIKRIF 375


>gi|257076819|ref|ZP_05571180.1| signal recognition particle receptor FtsY [Ferroplasma acidarmanus
           fer1]
          Length = 311

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 93/317 (29%), Positives = 157/317 (49%), Gaps = 26/317 (8%)

Query: 13  WIRKLTKGFAST---------SLKLKEGITDIISSRRLD---DGVREELEDLLIRSDIGV 60
              KL K F+              L      +   +      D +   +E+ L+ +D+  
Sbjct: 1   MFDKLKKKFSDIFSGNKENGPKDSLTATRDSVAPQKEKTIRRDELESTIEETLLEADVSY 60

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD------FSHRPHVI 114
              ++I+E+L  K     +  +     V E +  ++  + +  N D         +P VI
Sbjct: 61  DATEEIIEKL--KANLGKLKRKIDYPAVEEELKSVVRDVIQHNNKDAVNLLTVEKKPFVI 118

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L +G+NG GKTT IGKL+  +      V+L+A DTFR+ AIDQL I A     + +  + 
Sbjct: 119 LFLGINGTGKTTTIGKLAYYLKSNNKSVVLSASDTFRAGAIDQLNILAGNVGVEIIKHDF 178

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            SD A++A++A + A+A+K+D ++ID+AGR+  N  L+  + K+ RV K      P   +
Sbjct: 179 RSDPASVAFDAIEHAKARKMDYVLIDSAGRMQTNKNLLDEMKKIKRVAK------PDMTI 232

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLDA  GQ+ + Q   F +      +I+TK+D  A+GG +I I    K P+ F+G+G+ 
Sbjct: 233 LVLDAMIGQDVINQALTFSSEINYDSVIVTKLDTDAKGGSIISISAGIKKPILFVGIGQE 292

Query: 295 INDLEPFVAKDFSAVIT 311
           ++D+ PF  + +   I 
Sbjct: 293 MDDIIPFDVEWYLKKIF 309


>gi|303231828|ref|ZP_07318542.1| signal recognition particle-docking protein FtsY [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513506|gb|EFL55534.1| signal recognition particle-docking protein FtsY [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 233

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 107/228 (46%), Positives = 144/228 (63%), Gaps = 5/228 (2%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + + I +ML+           H P VILVVGVNGVGKTT I KL+   +  G KV++AAG
Sbjct: 4   MEDRITEMLVDQEDEITL---HHPEVILVVGVNGVGKTTTIAKLANYYTKEGKKVIIAAG 60

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA DQL IWADR     V  + G+D AA+ Y+A + A+A+  D++I+DTAGRLH 
Sbjct: 61  DTFRAAAADQLSIWADRVGVPIVKHKEGADPAAVVYDAMEAAKARNADMVIVDTAGRLHT 120

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
              LM  + KM RV       APH  L VLD TTGQNA+ Q ++F       G+++TK+D
Sbjct: 121 KVNLMEELKKMGRVANNHVEGAPHQTLLVLDGTTGQNAVSQAKLFGQAVPVNGIVVTKLD 180

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT--GC 313
           GTA+GG +I I     +PV ++GVGEG++DL PF AK+F+  +   G 
Sbjct: 181 GTAKGGVVISIKEELGVPVRWIGVGEGMDDLRPFNAKEFANALFNKGM 228


>gi|167045397|gb|ABZ10052.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine crenarchaeote HF4000_APKG10F15]
          Length = 559

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 20/310 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              KL   F+  +    E     ++ + +DD V  ELE  L+ SD+   V   I  +L T
Sbjct: 1   MFEKLGNAFSKAAKSFSEKD---LNEKDIDD-VLSELEISLLESDVATEVIDSIKSDLST 56

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMP----------LSKPFNWDFSHRPHVILVVGVNGV 122
           K     V+ + +   V + + + +            LS   +      P++IL VG+NG 
Sbjct: 57  KLVGSRVNKKEIEDFVKKSLTENISSMFDDAGSVDILSNIKSKTDPQDPYLILFVGINGT 116

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT + K++  +    + V++AA DTFR+ AI+QL+   ++ +   +    GSD AA+A
Sbjct: 117 GKTTTVAKIANLLQKNKISVVVAAADTFRAGAIEQLREHINKLNLKLIAQNYGSDPAAVA 176

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A   A++ KVD ++ID+AGR+  N  LM  I K+ +V+       P   + V D+  G
Sbjct: 177 HDALLYAKSHKVDCVLIDSAGRMQTNKNLMEQIAKISKVVS------PDLKIFVGDSLAG 230

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            +A+ Q   FH      G I+TK D   RGG  + IV   K PV ++G G+G +DLE F 
Sbjct: 231 NDAVSQAREFHKHTTFDGAILTKSDADTRGGAALSIVAVTKKPVIYVGTGQGYDDLELFS 290

Query: 303 AKDFSAVITG 312
            + F   + G
Sbjct: 291 KEIFLETVFG 300


>gi|256843375|ref|ZP_05548863.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
 gi|256614795|gb|EEU19996.1| cell division protein [Lactobacillus crispatus 125-2-CHN]
          Length = 415

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 109/295 (36%), Positives = 168/295 (56%), Gaps = 6/295 (2%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   T+      +    +  R +D+   ++LEDLLI SD+G   A+++ +EL  +   +
Sbjct: 113 KGLEKTNKGFGARLNAFFAKFRTVDEDFFDDLEDLLIESDVGYETAEQLTDELREEAKLQ 172

Query: 78  DVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +   +  L  V      +L  K      +   ++   +P+V L+VGVNG GKTT IGKL+
Sbjct: 173 NAKSRDELKRVIVEKLVDLYDKGGNSEDEQLTYNAEAKPNVYLLVGVNGAGKTTTIGKLA 232

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K+  D G  V+LAA DTFR+ A++QL  W  R     V  +  +D A++ Y+A ++A  +
Sbjct: 233 KRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVPVVTGKEKADPASVVYDATERAIRE 292

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D L++DTAGRL N   LMA + K+ R +K+L P  P   L VLD +TGQNAL Q + F
Sbjct: 293 KADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLLPDQPTETLLVLDGSTGQNALLQAKDF 352

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 TGL++TK+DG+++GG ++ I     +PV  +G+GE   DL  F A +++
Sbjct: 353 DKTTELTGLVLTKLDGSSKGGVVLAIRNEMNLPVKLVGLGERAEDLADFDAANYA 407


>gi|218562818|ref|YP_002344597.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|112360524|emb|CAL35321.1| putative signal recognition particle protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|315927266|gb|EFV06611.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni DFVF1099]
          Length = 288

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 158/299 (52%), Gaps = 16/299 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
                 KG A T   +     +   ++++   + EE+   L+ +D+   + ++I+  L  
Sbjct: 1   MFNFFKKGLAKTLENIVGVKGE---NKKITKDLLEEI---LLEADVSYEIVEEIIYYLPP 54

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +   K         D+  ++    +   K  N +   +P V L++GVNG GKTT I KL+
Sbjct: 55  QNEVKK-------EDLKRVMGSYFLYEKKETNQE---KPFVELILGVNGAGKTTSIAKLA 104

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
               +   KV+L A DTFR+ AI+QLK+WA +   D V +  G D +A+ ++   +A+AK
Sbjct: 105 YLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVTFDTISKAKAK 164

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D +IIDTAGRL N   L   + K++R+  +    APH  + VLD T G   + Q + F
Sbjct: 165 DFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAF 224

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +    G+I+TK+DGTA+GG L  I    ++P++++GVGE + DL+ F A  +   + 
Sbjct: 225 NELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLL 283


>gi|238809629|dbj|BAH69419.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 355

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 109/300 (36%), Positives = 176/300 (58%), Gaps = 8/300 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + K   G + +S  L + I ++ +  + +++   +ELE++LI SDI   +   I+  +  
Sbjct: 47  LDKYATGLSKSS-SLGKQIFNLQNKHKEINEEFFDELEEILIMSDINAKLVYAIITHIKN 105

Query: 73  KRYAKDVSVQRVLYDVSE----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  A+ +   + + ++      +++     +    N+    R ++ + VGVNG GKTT I
Sbjct: 106 EVRARGLKDTKDIGELVADQMFVVYTNKSIVDTTLNYQ-DGRLNIFIFVGVNGSGKTTSI 164

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFK 187
            K++ K    G KV++AAGDTFR+ A+DQL +WA+R  A  V   + G D +++ YEA +
Sbjct: 165 AKIAYKYIKEGKKVLIAAGDTFRAGAVDQLGVWAERVGAPIVKPVKEGVDPSSVVYEALE 224

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +AQ +K D+L+IDTAGRL N   LM  + KM  ++ R    APH  L VLDATTGQN + 
Sbjct: 225 KAQNEKYDLLLIDTAGRLQNKVNLMKELEKMYGIIARFQDKAPHECLLVLDATTGQNGVS 284

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F  VA  TG+I+TKMDGT++GG ++ I     + V ++G+GEG++DL+ F   +F 
Sbjct: 285 QARSFKEVAAPTGIILTKMDGTSKGGIVLLIKDEFDLNVKYIGLGEGLDDLQEFDLDNFI 344


>gi|14520718|ref|NP_126193.1| signal recognition particle receptor [Pyrococcus abyssi GE5]
 gi|5457934|emb|CAB49424.1| GTP-binding signal recognition particle receptor (SRP alpha, SRP54)
           [Pyrococcus abyssi GE5]
          Length = 322

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 93/263 (35%), Positives = 138/263 (52%), Gaps = 14/263 (5%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFNWDF------SH 109
           + + V   + E++  K   K V +      + E  +   +L  L+ P   D       S 
Sbjct: 62  VALEVVDALKEKIKEKLVGKKVRIGTDKEKIIEDAVREAILEILTPPRKIDLLEEIRKSE 121

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+VIL VG NG GKTT I KL+  +   G  V++AA DTFR+ AI+QL+  A R     
Sbjct: 122 KPYVILFVGFNGSGKTTTIAKLAHWLKKNGFSVVIAASDTFRAGAIEQLEEHAKRVGVKV 181

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G+D AA+AY+A + A+A+ +DV++IDTAGR   N  LM  + K+ RV K      
Sbjct: 182 IKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMRKIARVTK------ 235

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ V+ V D+  G   + Q   F+       +I+TK+D  ARGG  + I      P+ F+
Sbjct: 236 PNLVVFVGDSLAGNAIVEQARQFNDAVKIDAVILTKLDADARGGAALSISHVTNAPILFV 295

Query: 290 GVGEGINDLEPFVAKDFSAVITG 312
           G+G+G +DL PF  K F   I G
Sbjct: 296 GIGQGYDDLMPFDEKWFVERILG 318


>gi|150401682|ref|YP_001325448.1| signal recognition particle protein Srp54 [Methanococcus aeolicus
           Nankai-3]
 gi|166222333|sp|A6UWG4|SRP54_META3 RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|150014385|gb|ABR56836.1| GTP-binding signal recognition particle SRP54 G- domain
           [Methanococcus aeolicus Nankai-3]
          Length = 450

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 145/308 (47%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY- 75
                  +   ++ I       ++L   V ++++  LI++D+ V +   + +E+  K   
Sbjct: 2   LDKLGSNINNALSKIKNATFVDKKLVKEVIKDIQKALIQADVNVKLVFAMSKEIERKAIY 61

Query: 76  ---AKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +S +  +   V + + K+L    +    D  ++ ++IL+VG+ G GKTT   KL
Sbjct: 62  ESAPKGLSKKDHIIKIVYDELVKLLGEEGQKLELDPKNK-NIILLVGIQGSGKTTSAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQAQ 190
           ++ +   G K  L A D +R AA  QLK  +++           +     +  E  KQ +
Sbjct: 121 ARTLQKRGFKPALIAADVYRPAAYQQLKQLSEKIHIPLHGDPTKTKTPMEITEEGLKQFK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K DV+IIDTAGR    S L+  + +M           P  ++ V+D T GQ A  Q +
Sbjct: 181 --KNDVIIIDTAGRHKEESGLLEEMKEMKE------KFNPEEIILVIDGTLGQQAKNQAK 232

Query: 251 MFHAVAGTTGLIM-TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            F       G I+ TKMDG+A+GGG +  V     P+ F+G GE ++DLEPF  K F + 
Sbjct: 233 AFKDAVENIGSILITKMDGSAKGGGALSAVAEIGAPIKFIGTGEKVDDLEPFDPKKFISR 292

Query: 310 ITGCLDYG 317
           + G  D  
Sbjct: 293 LLGMGDLD 300


>gi|322492125|emb|CBZ27399.1| putative signal recognition particle [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 519

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLT 72
            A    K+ + I  + +   L +D V+E   E+   L+++D+ V + +K    I  EL  
Sbjct: 3   LAELGQKIGQAIHRMSAKSMLGEDDVKELMNEIARALLQADVNVTIVKKLQVSIKTELAL 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                 ++ +++L + V   + ++L P  KPF      + +V++ VG+ G GKTT   K 
Sbjct: 63  AEEGAGLNKRKILQNAVFNGLKRILDPGVKPF-IPVKGKQNVVMFVGLQGSGKTTSCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQL+  A +    F  S   +D  A+A E   + + 
Sbjct: 122 AAYFQRKGFKAALVCADTFRAGAYDQLRQNATKAKVRFYGSLTEADPVAIAKEGVAELKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR    S L   + ++   +K      P+ ++ V+ AT GQ    Q   
Sbjct: 182 EKYDLIIVDTSGRHKQESALFEEMKQVEEAVK------PNDIVFVMSATDGQAVEEQARN 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +     +I+TK+D   +GGG +  V   + P+ F+G GE   D + F  + F   + 
Sbjct: 236 FKEMVAVGSVIVTKLDCQTKGGGALSAVAATRSPIVFIGTGEHFEDFDLFNPERFVQKML 295

Query: 312 GCLDYG 317
           G  D G
Sbjct: 296 GMGDIG 301


>gi|168333989|ref|ZP_02692213.1| signal recognition particle-docking protein FtsY [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 776

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 196/313 (62%), Gaps = 2/313 (0%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           +S +      +S  +KL +G   T   + +G+  ++ S +++D+ + EELE++L+ SD G
Sbjct: 461 ISKEVPEVNLVSKFKKLWQGLTKTRENIWDGVESVLKSFKKIDEELYEELEEVLVMSDFG 520

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
                 I+++L     +  ++    L + + ++I  +L+            RP+VILVVG
Sbjct: 521 AETTDAILDQLRDVVKSTKITEPAELKEALKDIITDILISTDLTNPLVVDDRPNVILVVG 580

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT I KLS K+   G  V+LAA DTFR+AAI+QL+IWADR   D + ++ G+D 
Sbjct: 581 VNGAGKTTSIAKLSHKLKQEGKSVLLAAADTFRAAAIEQLEIWADRAGVDVIKNKEGTDP 640

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++ Y+A   A+A+K DVLI DTAGRL N   LM  + K+ R++++   +A   V+ VLD
Sbjct: 641 ASVVYDAISAAKARKSDVLICDTAGRLQNKVNLMKELEKIGRIIEKEYSNAHKQVILVLD 700

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQNA+ QV++F+ V    G+I+TK+DGTA+GG ++ I  +  +PV F+GVGE ++DL
Sbjct: 701 ATTGQNAISQVKLFNEVVKIDGIILTKLDGTAKGGAIVGICQSFNVPVKFIGVGEKMDDL 760

Query: 299 EPFVAKDFSAVIT 311
           + FV + F+  + 
Sbjct: 761 QEFVPEAFAKALF 773


>gi|91772186|ref|YP_564878.1| signal recognition particle-docking protein FtsY [Methanococcoides
           burtonii DSM 6242]
 gi|91711201|gb|ABE51128.1| signal recognition docking protein FtsY [Methanococcoides burtonii
           DSM 6242]
          Length = 366

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 105/329 (31%), Positives = 170/329 (51%), Gaps = 25/329 (7%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITD-----------IISSRRLDDGVREEL 49
           +S  +V+    S+  +L K  AS SLK K G              I+    ++D + E L
Sbjct: 44  VSTPEVSENVSSFEDQLDKTEASPSLKQKIGFAQKAKALVFEREVILDGSDIEDSLWE-L 102

Query: 50  EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFS 108
           E  L+ SDI + VA+ IVE +  +       + +   ++ E  +   +  +     +D  
Sbjct: 103 EMALLESDIAINVAEAIVESVKEELVGSRKKLGKNTGELVENALRSAIYKVMSANVFDLD 162

Query: 109 H------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                  +P  I+ +G+NG GKTT I K++K++ D    V++AAGDTFR+ AIDQ+ I A
Sbjct: 163 DYIRDAEKPVHIVFIGINGTGKTTTISKMAKRLKDMKYSVVIAAGDTFRAGAIDQIAIHA 222

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           +R     +  + G D AA+ Y+A + A+A  VDV++ DTAGR+H N  LMA + K+ RV 
Sbjct: 223 ERIGVKLIKHQEGGDPAAVVYDAVQHAKAHNVDVVLSDTAGRMHTNVNLMAQLEKVCRV- 281

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                 +P  ++ V +A  G +A+ + + F+      G I+TK D  ++GG  I I    
Sbjct: 282 -----SSPDLIIFVDEAVAGNDAVERAQQFNTAVPIHGSILTKTDADSKGGAAISIAYIT 336

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ FLG+G+G +DL+ F  + F   + 
Sbjct: 337 GKPILFLGMGQGYDDLKKFDPEWFVDQLF 365


>gi|161527904|ref|YP_001581730.1| signal recognition particle-docking protein FtsY [Nitrosopumilus
           maritimus SCM1]
 gi|160339205|gb|ABX12292.1| signal recognition particle-docking protein FtsY [Nitrosopumilus
           maritimus SCM1]
          Length = 513

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 97/318 (30%), Positives = 153/318 (48%), Gaps = 20/318 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              KL   F++ +    E     ++ + ++D + E LE  L+ SD+   V   I ++L  
Sbjct: 1   MFDKLRSAFSNAAKSFGE---KELNEKDIEDILFE-LEISLLESDVATEVIDSIKDDLKE 56

Query: 73  KRYAKDVSVQRVLYDVSELI----------HKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           K     V  + +   V + +             +    K        +P +IL +G+NG 
Sbjct: 57  KLVGSKVDKKEIEKFVKDSLISSISAHFDAAGEIDLFGKINEKKEQGQPFLILFLGINGT 116

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT + K++  +      V++AA DTFR+ AI+QL+   +R +   V     SD AA+A
Sbjct: 117 GKTTSLAKVAHMLQQEKYSVVVAAADTFRAGAIEQLREHTNRLNLKLVAQNYNSDPAAVA 176

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +A   A++ K DV++IDTAGR+  +  LM  I K+ +V+       P   + V D+  G
Sbjct: 177 RDAVLYAKSHKTDVVLIDTAGRMQTSENLMQQIEKITKVVN------PDLKIFVGDSLAG 230

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            + + Q   FHA     G I+TK D  ARGG  + IV     PV ++GVG+   DL+PF 
Sbjct: 231 NDTVNQAREFHAHTNFHGSILTKSDADARGGAALSIVKVTSTPVMYVGVGQEYPDLKPFD 290

Query: 303 AKDFSAVITGCLDYGEEK 320
            K F   + G LD  + K
Sbjct: 291 KKTFLETVFGNLDNVDIK 308


>gi|21226912|ref|NP_632834.1| signal recognition particle subunit Ffh/SRP54 [Methanosarcina mazei
           Go1]
 gi|20905220|gb|AAM30506.1| signal recognition particle subunit Ffh/SRP54 [Methanosarcina mazei
           Go1]
          Length = 419

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 163/310 (52%), Gaps = 16/310 (5%)

Query: 12  SWIRKL--TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           S+ +KL    GF   +  L       +  + L++ + E LE  L+ SD+ V+V++ IVE 
Sbjct: 115 SFFKKLAPKVGFTQKAKALVFNREVYLDEKDLEEPLWE-LEMGLLESDLAVSVSEAIVES 173

Query: 70  LLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSH------RPHVILVVGVNGV 122
           +  +       +     D+ E  + K ++ +     +DF        +P  I+ VG+NG 
Sbjct: 174 VKNQLTGTTKRIGSNTGDIVEEALKKAILDVVSANTFDFDEYVKNRPKPVHIVFVGINGT 233

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I K++ ++   G  V+LAAGDTFR+ AIDQL I ADR     +  + G+D AA+ 
Sbjct: 234 GKTTSISKMTHRLLKLGYSVVLAAGDTFRAGAIDQLGIHADRLGVKMIKHQAGADPAAVI 293

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A  +D ++ DTAGR+H N  LMA + K+ RV       +P  ++ V +A  G
Sbjct: 294 YDAVQYAKAHNIDFVLSDTAGRMHTNMNLMAQMEKICRV------SSPDLIIFVDEAVAG 347

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            +A+ +   F+      G I+TK+D  A+GG  I I      P+ F GVG+G  DL+ F 
Sbjct: 348 NDAVERAAQFNDAVPIDGSILTKIDADAKGGAAISIAYITGKPILFFGVGQGYEDLKKFE 407

Query: 303 AKDFSAVITG 312
            + F   + G
Sbjct: 408 PEWFVDQLFG 417


>gi|255722509|ref|XP_002546189.1| signal recognition particle 54 kDa protein [Candida tropicalis
           MYA-3404]
 gi|240136678|gb|EER36231.1| signal recognition particle 54 kDa protein [Candida tropicalis
           MYA-3404]
          Length = 555

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 145/322 (45%), Gaps = 35/322 (10%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV---REELEDLLIRSDIGVAVAQKIVEELLTKRYA- 76
            A    +L+  ++ + S    DD +    +++   L+ SD+ V +  K+   + TK    
Sbjct: 3   LADLGSRLRGALSSVESGS--DDEIQQMIKDICGALLESDVNVKLVAKLRGNIKTKIEEG 60

Query: 77  ---KDVSVQRVLYDVSELIHKMLMPLS-------KPFNWDFSHRP-------------HV 113
              ++ S       + ++I   L  L        KP     + +              HV
Sbjct: 61  NIVQETSAMNKRKKLQKIIFDELCALVDSHVEPPKPKKLSTTTKTINGKKIRLSKESSHV 120

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+ VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A + +  +  S 
Sbjct: 121 IMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYYGSY 180

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +  D   +A+E  ++ + +K D++I+DT+GR      L   + ++   ++      P   
Sbjct: 181 LEPDPVKIAFEGVQKFKQEKFDIIIVDTSGRHRQEEQLFTEMVQIGEAVQ------PTQT 234

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + V+D + GQ A  Q   F   +    +I+TKMDG A+GGG I  V   K P+ F+G GE
Sbjct: 235 IMVMDGSIGQAAESQARAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGE 294

Query: 294 GINDLEPFVAKDFSAVITGCLD 315
            I DLE F    F + + G  D
Sbjct: 295 HIGDLEIFKPTTFISKLLGIGD 316


>gi|300741690|ref|ZP_07071711.1| signal recognition particle-docking protein FtsY [Rothia
           dentocariosa M567]
 gi|300380875|gb|EFJ77437.1| signal recognition particle-docking protein FtsY [Rothia
           dentocariosa M567]
          Length = 371

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 110/314 (35%), Positives = 180/314 (57%), Gaps = 6/314 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S   +   S   + +L    A ++  L +G+  ++S  R+D  V +E+E+ L+ +D+G  
Sbjct: 59  SRYDIPDPSAGRLVRLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLMADLGAE 118

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKP--FNWDFSHRPHVILVVG 118
              ++VE L  +   +       +   + E + +++ P              P V+LVVG
Sbjct: 119 PTTRLVEALQKRVRVEGTDNPAAVKKMLHEELLEIIGPTMDRELKTEGTDGNPGVVLVVG 178

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNGVGKTT +GK+++ M   G  ++L A DTFR+AA +QL  W DR     V SE  G+D
Sbjct: 179 VNGVGKTTTVGKIARVMVADGNSLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEKEGAD 238

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A++A K A+A+ +  +++DTAGRL N + LM  +GK+ RV+++  P     VL V+
Sbjct: 239 PASVAFDAVKTAKAEGIGTVLVDTAGRLQNKAGLMDQLGKIKRVIEKEAPVT--EVLLVI 296

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN + Q ++F  +   TG+++TK+DGTA+GG ++ I     +PV  +G+GEG +D
Sbjct: 297 DATTGQNGMVQAKVFGEIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLVGLGEGPDD 356

Query: 298 LEPFVAKDFSAVIT 311
           L PF  + F   + 
Sbjct: 357 LAPFDPEGFVDALL 370


>gi|227892633|ref|ZP_04010438.1| signal recognition particle docking protein FtsY [Lactobacillus
           ultunensis DSM 16047]
 gi|227865565|gb|EEJ72986.1| signal recognition particle docking protein FtsY [Lactobacillus
           ultunensis DSM 16047]
          Length = 430

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 110/295 (37%), Positives = 166/295 (56%), Gaps = 6/295 (2%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           KG   T+      +    +  R +D+   ++LEDLLI SD+G   A+++ +EL  +   K
Sbjct: 128 KGLEKTNKGFGARLNAFFAKFRSVDEDFFDDLEDLLIESDVGYETAEQLTDELREEAKLK 187

Query: 78  DVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +   +  L  V      +L  K      +   +    +P+V L VGVNG GKTT IGKL+
Sbjct: 188 NAKSRDALKQVIVEKLVDLYDKGGQDKDEKLIYHPDDKPNVYLFVGVNGAGKTTTIGKLA 247

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K+  D G  V+LAA DTFR+ A++QL  W  R     V  +  +D A++ Y+A ++A  +
Sbjct: 248 KRFKDEGKSVILAAADTFRAGAVEQLVEWGKRVDVPVVTGKEKADPASVVYDATERAINE 307

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D L++DTAGRL N   LMA + K+ R +K+L P  P   L VLD +TGQNAL Q + F
Sbjct: 308 KADYLLVDTAGRLQNKKNLMAELEKIQRTIKKLAPDQPTETLLVLDGSTGQNALLQAKDF 367

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                 TGL++TK+DG+++GG ++ I     +PV  +G+GE   DL  F A +++
Sbjct: 368 DKTTKLTGLVLTKLDGSSKGGVVLAIRNEMNLPVKLVGLGEKAEDLADFDAANYA 422


>gi|171060174|ref|YP_001792523.1| signal recognition particle-docking protein FtsY [Leptothrix
           cholodnii SP-6]
 gi|170777619|gb|ACB35758.1| signal recognition particle-docking protein FtsY [Leptothrix
           cholodnii SP-6]
          Length = 346

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 121/310 (39%), Positives = 178/310 (57%), Gaps = 16/310 (5%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            W+ +L +G   T       I  + +  ++DD + E+LE  L+ +D GV   Q ++ +L 
Sbjct: 42  GWLNRLKQGLRRT----GSSIAQVFTGTQIDDALYEDLEAALLVADAGVGATQFLLNDLK 97

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +      +    +  +       L+ PL      D + +P VI+V GVNG GKTT IGK
Sbjct: 98  RRVKETRTTDPGAVKALLADALTDLLTPLQGTLKVD-AQQPTVIMVAGVNGAGKTTTIGK 156

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ +++A  KV+LAA DTFR+AA +QL +WADR   + V S+ G D AA+ ++A    +
Sbjct: 157 LTRNLAEANCKVLLAAADTFRAAAREQLAVWADRNQVEIV-SQEGGDPAAVCFDAISAGR 215

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  DV+I DTAGRL     LM  + K+ R + R  P APH VL V+D  TGQNAL QV+
Sbjct: 216 ARGCDVVIADTAGRLATQLHLMEELRKIHRSIGRAMPGAPHEVLLVVDGNTGQNALAQVK 275

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK---------IPVYFLGVGEGINDLEPF 301
            F    G TGL++TK+DGTA+GG L  I +  +         +PVYF+GVGE + DL+ F
Sbjct: 276 AFDTALGLTGLVVTKLDGTAKGGVLAAIALWGRERQARGLGAVPVYFIGVGESLADLQTF 335

Query: 302 VAKDFSAVIT 311
            A++FS  + 
Sbjct: 336 DAREFSQALL 345


>gi|24473790|gb|AAL55410.1| SRP54-like protein [Leishmania major]
          Length = 487

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 146/306 (47%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLT 72
            A    K+ + I  + +   L +D V+E   E+   L+++D+ V + +K    I  EL  
Sbjct: 3   LAELGQKIGQAIHRMSAKSMLGEDDVKELMNEIARALLQADVNVTIVKKLQVSIRTELAL 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                 ++ +++L + V   + ++L P  KPF      R +V++ VG+ G GKTT   K 
Sbjct: 63  AEEGAGLNKRKILQNAVFNGLKRILDPGVKPF-LPVKGRHNVVMFVGLQGSGKTTSCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQL+  A +    F  S   +D  A+A E   + + 
Sbjct: 122 AAYFQRKGFKTALVCADTFRAGAYDQLRQNATKAKVRFYGSLTEADPVAIAKEGVAELKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR    S L   + ++   +K      P+ ++ V+ AT GQ    Q   
Sbjct: 182 EKYDLIIVDTSGRHKQESALFEEMKQVEEAVK------PNDIVFVMSATDGQAVEEQARN 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +     +I+TK+D   +GGG +  V   + P+ F+G GE   D + F  + F   + 
Sbjct: 236 FKEMVAVGSVIVTKLDCQTKGGGALSAVAATRSPIVFIGTGEHFEDFDLFNPERFVQKML 295

Query: 312 GCLDYG 317
           G  D G
Sbjct: 296 GMGDIG 301


>gi|197294840|ref|YP_001799381.1| Signal recognition particle-docking protein [Candidatus Phytoplasma
           australiense]
 gi|171854167|emb|CAM12161.1| Signal recognition particle-docking protein [Candidatus Phytoplasma
           australiense]
          Length = 331

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 98/303 (32%), Positives = 157/303 (51%), Gaps = 11/303 (3%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            K   G A T        T +  ++ +++ +   LE++LI SD GV     +++ +    
Sbjct: 16  DKYQLGLAKTKGNFVNFETLLKEAKNIEESLLSALENILIESDFGVKTTLFLMQSIKNYL 75

Query: 75  YAKDVSVQRVL--YDVSELIHKMLMPLSKPFNWDFSHR-------PHVILVVGVNGVGKT 125
              ++   R L    +  L+H       +      +         P + L VGVNGVGKT
Sbjct: 76  NQSNIKEARQLPSIIIKHLLHLYQDSSKQSQTPILNTNSKTTLTDPQMYLFVGVNGVGKT 135

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE--IGSDAAALAY 183
           T IGK++ K+   G KV+L AGDTFR+ A++QLKIW + +  +    E  +    +++ +
Sbjct: 136 TTIGKMATKLRQEGKKVLLVAGDTFRAGAVEQLKIWGNWSQTEVFAKEGTLFPSPSSVIF 195

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           E  + A+    DV++ DTAGRL N + LM  + K+ RV+ +           VLDA TGQ
Sbjct: 196 EGLQYAKKNAYDVVLCDTAGRLQNKANLMQELAKIQRVILKHLNPENLQSFLVLDANTGQ 255

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           NAL QVE+F+     TG I+TK+DGT++GG +  I   + + + F+G+GE   DL  F  
Sbjct: 256 NALNQVELFNEAVPLTGAIITKLDGTSKGGIVFAIKHLYNLSIKFIGLGEKPEDLVDFDI 315

Query: 304 KDF 306
           +++
Sbjct: 316 QNY 318


>gi|254420786|ref|ZP_05034510.1| signal recognition particle protein [Brevundimonas sp. BAL3]
 gi|196186963|gb|EDX81939.1| signal recognition particle protein [Brevundimonas sp. BAL3]
          Length = 520

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L      I     L +  V E + +    L+ +D+ + V ++ +     +   
Sbjct: 2   FEALNERLTGVFDRITGRGALSEKDVAEAMREVRVALLEADVALPVVKEFIAFATERATG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V        +V+  V + + +ML           +  P V+L+ G+ G GKTT   KL
Sbjct: 62  EEVIRSVKPADQVVKIVYDGLIEMLGGEEPVPLNTNATPPAVVLMAGLQGSGKTTTSAKL 121

Query: 132 SKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           + ++      KVM+A+ DT R AA++QL     +     +    G  A  +   A + A+
Sbjct: 122 ALRLTKFDRKKVMMASLDTRRPAAMEQLAQLGKQIDVAVLPIVAGESAVQITRRALQSAK 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DVLI+DTAGR+  +  LM  + ++  + K      P   L V D+ TGQ+A+R   
Sbjct: 182 LQGFDVLILDTAGRITLDEGLMNEVAEVAEIAK------PVETLLVADSLTGQDAVRTAA 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FHA    TGL++T+ DG  RGG ++ +     +P+ +LG GE ++ L+ F A+  +  I
Sbjct: 236 AFHARLPLTGLVLTRADGDGRGGAMLSMRAVTGLPIKYLGAGEKVDALDVFDARRVAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGQGD 300


>gi|282850850|ref|ZP_06260224.1| signal recognition particle-docking protein FtsY [Lactobacillus
           gasseri 224-1]
 gi|282557802|gb|EFB63390.1| signal recognition particle-docking protein FtsY [Lactobacillus
           gasseri 224-1]
          Length = 301

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/259 (37%), Positives = 151/259 (58%), Gaps = 5/259 (1%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFS 108
           I SD+G   A+++ + L  +   ++      L  V      ++  K           D  
Sbjct: 35  IESDVGFETAEELTDSLRDEAKLQNAKSHDDLKQVIVEKLVDIYDKGGEGEDSKLADDPD 94

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P+V L VGVNG GKTT IGKL+K++ D+G  VM+ A DTFR+ A++QL  W  R   +
Sbjct: 95  AKPNVYLFVGVNGAGKTTTIGKLAKRIKDSGKSVMMVAADTFRAGAVEQLVEWGRRDGVE 154

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V     +D A++ Y+  K+A+ + +D L++DTAGRL N   LM+ + K+ R +K++ P 
Sbjct: 155 VVTGPEKADPASVVYDGVKKAKDRGIDFLLVDTAGRLQNKVNLMSELDKIKRTIKKILPD 214

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P+ VL VLD +TGQNAL Q + F      TGL++TK+DG+++GG ++ I     +PV  
Sbjct: 215 QPNEVLLVLDGSTGQNALLQAKDFDKTTKLTGLVLTKLDGSSKGGVVLAIRNEMDLPVKL 274

Query: 289 LGVGEGINDLEPFVAKDFS 307
           +G+GE ++DL  F A+ F+
Sbjct: 275 VGLGEKVDDLANFDAEKFA 293


>gi|291437021|ref|ZP_06576411.1| prokaryotic docking protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339916|gb|EFE66872.1| prokaryotic docking protein [Streptomyces ghanaensis ATCC 14672]
          Length = 409

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 175/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q
Sbjct: 100 EIPEPTAGRLIRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQ 159

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNG 121
           ++VE L  +           L   + + +  ++ P         + +  P +++VVGVNG
Sbjct: 160 ELVERLRERVKVLGTRTPEELRGLLRQELITLVGPEMDRTVHTENAAGGPGIVMVVGVNG 219

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 220 TGKTTTTGKLARVLVADGNTVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDPASV 279

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+ +    D ++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 280 AFDAVKEGKEMAADAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAP--LDEVLLVLDATT 337

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 338 GQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPF 397

Query: 302 VAKDFSAVITG 312
             + F   + G
Sbjct: 398 EPEAFVDALLG 408


>gi|156844088|ref|XP_001645108.1| hypothetical protein Kpol_538p10 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115765|gb|EDO17250.1| hypothetical protein Kpol_538p10 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 577

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 84/313 (26%), Positives = 142/313 (45%), Gaps = 24/313 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            A    ++   +   +S+ + D     D + + +   L+ +D+ + +  K+   +  K  
Sbjct: 3   LADLGKRINSAVNSALSNTQDDYATAVDILLKNIVTALLEADVNIQLVSKLRANIKAKLL 62

Query: 76  AKDVSVQ-------RVLYDVSELIHKMLMPLSKPFN------WDFSHRPHVILVVGVNGV 122
            ++ +         +    + + +   L  L                + ++I+ VG+ G 
Sbjct: 63  DQNSNNNNQTSKSGQTKKLIQKTVFDELCNLVDGNTDQQQQFIPKKRKTNIIMFVGLQGS 122

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT   KL+      G KV L   DTFR+ A DQLK  A +    F  S   +D   +A
Sbjct: 123 GKTTSCTKLAVYYQKRGFKVGLVCADTFRAGAFDQLKQNAIKAHIPFYGSYTEADPVRVA 182

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            E   + + +K D++I+DT+GR      L   + ++   +K      P+  + VLDA+ G
Sbjct: 183 SEGIAKFKKEKFDIIIVDTSGRHRQEEQLFQEMIEISNEIK------PNQTIMVLDASIG 236

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q A +Q + F   +    +I+TKMDG A+GGG I  V     P+ F+G GE I+DLE F 
Sbjct: 237 QAAEQQSKAFKESSDFGAIILTKMDGHAKGGGAISAVAATNTPIIFIGTGEHIHDLEKFS 296

Query: 303 AKDFSAVITGCLD 315
            K F + + G  D
Sbjct: 297 PKSFVSKLLGIGD 309


>gi|269792626|ref|YP_003317530.1| signal recognition particle-docking protein FtsY [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100261|gb|ACZ19248.1| signal recognition particle-docking protein FtsY [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 309

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 170/308 (55%), Gaps = 4/308 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +++K+         + + G+ +I S   + D   E LE+ LI  D+GVA+A+++V +L
Sbjct: 2   IGFLKKVFDKVRDVKSRWEYGLRNIFSDEPITDEFFERLEEHLIAGDVGVALAERLVSDL 61

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFN--WDFSHRPHVILVVGVNGVGKTTV 127
                 K +S    L +   +++  ML       +    F+    +IL++GVNG GKTT 
Sbjct: 62  KRHAQEKRLSNATELKERFGQMLKDMLGEGLGGASKGLSFNGPVGLILLIGVNGSGKTTT 121

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+K +   G  V+LAA DTFR+AAIDQLK+W  R     V  + G D+AA+ Y+A +
Sbjct: 122 AAKLAKLLKGQGNNVVLAAADTFRAAAIDQLKVWGARAGVRVVAQDPGGDSAAVVYDAIQ 181

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             ++    ++I DTAGRLH    LM  + K+ RV +R         L VLDA TGQNA+ 
Sbjct: 182 SVKSTGG-IVIADTAGRLHTKHNLMEELAKIYRVARRDVGEEDIFPLLVLDAITGQNAIS 240

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F+      G+++TK D TA+GG ++ +    K+PV ++G+GEGI+D+ PF   DF 
Sbjct: 241 QARSFNGAMPLRGVVLTKFDHTAKGGAVLALSSELKVPVLYVGIGEGIDDMAPFSPDDFV 300

Query: 308 AVITGCLD 315
             + G  D
Sbjct: 301 EDLLGGGD 308


>gi|284931182|gb|ADC31120.1| signal recognition particle receptor ftsY [Mycoplasma gallisepticum
           str. F]
          Length = 348

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 165/310 (53%), Gaps = 4/310 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K   G   +S    + I  + +    L++   E+L D  ++ DIG    +KIV+ ++ +
Sbjct: 36  EKFDDGLKKSSNSFSDIINQLSTKYVSLNEAFYEDLFDAFVQLDIGYNATKKIVDAIVEE 95

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGK 130
              + V    ++    + +L    +       + ++  HR +V LVVGVNGVGKTT I K
Sbjct: 96  IKYQKVVDPTLIKQIIIDKLFVYYIQDSEVNIDLNYQDHRQNVFLVVGVNGVGKTTSIAK 155

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+        KV+L A DTFR+ AI QL IWA+R   D    E   D AA+ YE    A+
Sbjct: 156 LANYYKKLNKKVLLIAADTFRAGAIQQLNIWAERLEVDIYKDESKKDPAAVIYEGLNFAK 215

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D++I DT+GRL N   LM  + K+  V+++         L VLDATTGQ+ L Q +
Sbjct: 216 QRDYDLVICDTSGRLQNKVNLMNELKKINNVIEKFIGRNVDETLLVLDATTGQSGLIQAK 275

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +FH V+  TG+I++KMD +++GG ++ I     IPV  +G+GE ++DL  F  + +   +
Sbjct: 276 VFHEVSKITGIILSKMDSSSKGGIILGIKDLFNIPVKLIGLGEQLDDLVSFDLQKYLISL 335

Query: 311 TGCLDYGEEK 320
           T  L+   EK
Sbjct: 336 TANLNLDYEK 345


>gi|78778395|ref|YP_396507.1| signal recognition particle-docking protein FtsY [Prochlorococcus
           marinus str. MIT 9312]
 gi|78711894|gb|ABB49071.1| signal recognition particle-docking protein FtsY [Prochlorococcus
           marinus str. MIT 9312]
          Length = 430

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 179/312 (57%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ + + W+ KL KG   T       + D +    L     ++LE LLIR+D+G+    
Sbjct: 116 QISIDEIDWLTKLRKGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDSTD 175

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVN 120
           K++  L TK   + V  +  +  + + +  ++    K    D       + +V L+VGVN
Sbjct: 176 KVISSLRTKLNEEVVGGEAGIKFLKKELKLIVDKPIKNSGTDLLIPQKGKLNVWLLVGVN 235

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+   S +  K ++AA DTFR+AA++QLK+W +R++ D + ++  + D A
Sbjct: 236 GVGKTTTLGKLAYLSSRSNYKTLIAAADTFRAAAVEQLKVWGERSNVDVISNQSKNADPA 295

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   AQ + VD+L++DTAGRL   + LM  + K+ +++ +  P A    L VLDA
Sbjct: 296 AVVFDAINSAQKRNVDLLLVDTAGRLQTKNNLMDELAKIKKIIDKKVPDAIIESLLVLDA 355

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN L+Q + F   A  +G I+TK+DGT+RGG  + +     +P+ F+G GEGI DL 
Sbjct: 356 SQGQNGLKQAKSFAKSANLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIGAGEGIKDLR 415

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 416 PFNSYEFVEAML 427


>gi|257205636|emb|CAX82469.1| Signal recognition particle 54 kDa protein [Schistosoma japonicum]
          Length = 532

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 142/298 (47%), Gaps = 16/298 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   LI +D+ + + +++ E +      
Sbjct: 3   LAELGRKITNALRSLGNATIINEDVLNSLLKEICTALIEADVNIRLVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ ++++   V + +  ++ P  K +       P+VI++VG+ G GKTT   KL
Sbjct: 63  DEMAAGLNKRKIIQSAVFKELVHLVDPQVKAWQ-PARGSPNVIMLVGLQGCGKTTTATKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  +   DTFR+ A DQLK  A +    F  S   +D   +A +  ++   
Sbjct: 122 AYFYQRKGWKTCMICADTFRAGAFDQLKQNATKARIPFYGSYTETDPVVIARDGVQKFVE 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K +++I+DT+GR      L   + ++   ++      P  V+ VLDA+ GQ    Q   
Sbjct: 182 EKFEIIIVDTSGRHRQEDSLFEEMLQVSNAIE------PDHVIYVLDASIGQACEAQASA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           F A    + +I+TK+DG A+GGG +  V     P+ F+G GE + D E F  + F   
Sbjct: 236 FKAKVDVSSVIVTKLDGHAKGGGALSAVAATHSPITFIGTGEHVEDFEQFRVQPFVQK 293


>gi|311113793|ref|YP_003985015.1| cell division protein FtsY [Rothia dentocariosa ATCC 17931]
 gi|310945287|gb|ADP41581.1| cell division protein FtsY [Rothia dentocariosa ATCC 17931]
          Length = 367

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 110/314 (35%), Positives = 180/314 (57%), Gaps = 6/314 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S   +   S   + +L    A ++  L +G+  ++S  R+D  V +E+E+ L+ +D+G  
Sbjct: 55  SRYDIPDPSAGRLVRLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLMADLGAE 114

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKP--FNWDFSHRPHVILVVG 118
              ++VE L  +   +       +   + E + +++ P              P V+LVVG
Sbjct: 115 PTTRLVEALQKRVRVEGTDNPAAVKKMLHEELLEIIGPTMDRELKTEGTDGNPGVVLVVG 174

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSD 177
           VNGVGKTT +GK+++ M   G  ++L A DTFR+AA +QL  W DR     V SE  G+D
Sbjct: 175 VNGVGKTTTVGKIARVMVADGNSLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEKEGAD 234

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A++A K A+A+ +  +++DTAGRL N + LM  +GK+ RV+++  P     VL V+
Sbjct: 235 PASVAFDAVKTAKAEGIGTVLVDTAGRLQNKAGLMDQLGKIKRVIEKEAPVT--EVLLVI 292

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN + Q ++F  +   TG+++TK+DGTA+GG ++ I     +PV  +G+GEG +D
Sbjct: 293 DATTGQNGMVQAKVFGEIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLVGLGEGPDD 352

Query: 298 LEPFVAKDFSAVIT 311
           L PF  + F   + 
Sbjct: 353 LAPFDPEGFVDALL 366


>gi|294660283|ref|NP_852953.2| signal recognition particle receptor ftsY [Mycoplasma gallisepticum
           str. R(low)]
 gi|284811939|gb|AAP56521.2| signal recognition particle receptor ftsY [Mycoplasma gallisepticum
           str. R(low)]
 gi|284930417|gb|ADC30356.1| signal recognition particle receptor ftsY [Mycoplasma gallisepticum
           str. R(high)]
          Length = 348

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 165/310 (53%), Gaps = 4/310 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K   G   +S    + I  + +    L++   E+L D  ++ DIG    +KIV+ ++ +
Sbjct: 36  EKFDDGLKKSSNSFSDIINQLSTKYVSLNEAFYEDLFDAFVQLDIGYNATKKIVDAIVEE 95

Query: 74  RYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGK 130
              + V    ++    + +L    +       + ++  HR +V LVVGVNGVGKTT I K
Sbjct: 96  IKYQKVVDPTLIKQIIIDKLFVYYIQDSEVNIDLNYQDHRQNVFLVVGVNGVGKTTSIAK 155

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+        K++L A DTFR+ AI QL IWA+R   D    E   D AA+ YE    A+
Sbjct: 156 LANYYKKLNKKILLIAADTFRAGAIQQLNIWAERLEVDIYKDESKKDPAAVIYEGLNFAK 215

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  D++I DT+GRL N   LM  + K+  V+++         L VLDATTGQ+ L Q +
Sbjct: 216 QRDYDLVICDTSGRLQNKVNLMNELKKINNVIEKFIGRNVDETLLVLDATTGQSGLIQAK 275

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +FH V+  TG+I++KMD +++GG ++ I     IPV  +G+GE ++DL  F  + +   +
Sbjct: 276 VFHEVSKITGIILSKMDSSSKGGIILGIKDLFNIPVKLIGLGEQLDDLVSFDLQKYLISL 335

Query: 311 TGCLDYGEEK 320
           T  L+   EK
Sbjct: 336 TANLNLDYEK 345


>gi|295109855|emb|CBL23808.1| signal recognition particle-docking protein FtsY [Ruminococcus
           obeum A2-162]
          Length = 296

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 117/284 (41%), Positives = 163/284 (57%), Gaps = 4/284 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++ E   + ++L  G   T   +  G   I S    +D+   EELE++LI  DIG+    
Sbjct: 1   MSEEKKGFFKRLVSGLTKTRDNIVAGFDSIFSGYSSIDEDFYEELEEILIMGDIGINATS 60

Query: 65  KIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            I+E L  +  A+ +         +   I + +   S    ++F +R  VILV+GVNGVG
Sbjct: 61  SIIEHLKEQVSAQHIKNPMECKQLLINSIKEQMRVDSTE--YEFENRKSVILVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ K+ D G KV+LAA DTFR+AA +QL  WA R   D +  + G+D A++ Y
Sbjct: 119 KTTSVGKLAGKLKDQGKKVILAAADTFRAAAGEQLAQWASRAGVDLIGGQEGADPASIVY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   A+A+  DVLI DTAGRLHN   LM  + K+ R+L+R  P A    L VLD TTGQ
Sbjct: 179 DAVAAAKARNADVLICDTAGRLHNKKNLMEELRKIYRILEREYPEAYLETLVVLDGTTGQ 238

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
           NAL Q + F  VA   G+I+TK+DGTA+GG  + I     IPV 
Sbjct: 239 NALAQAKQFAEVANVNGIILTKLDGTAKGGIAVAIQSELDIPVK 282


>gi|294495862|ref|YP_003542355.1| signal recognition particle-docking protein FtsY [Methanohalophilus
           mahii DSM 5219]
 gi|292666861|gb|ADE36710.1| signal recognition particle-docking protein FtsY [Methanohalophilus
           mahii DSM 5219]
          Length = 351

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/326 (31%), Positives = 162/326 (49%), Gaps = 23/326 (7%)

Query: 2   SNQKVASESLSWIRKL---------TKGFASTSLKLKEGITDIISSRRLDDGVREELEDL 52
           S +   +E +S+  K            GFA  +  L      I+    ++D + E LE  
Sbjct: 32  STEPEVAEGISFQEKEAVNGTKGENKTGFAHKAKALVFEREFILDEADVEDILWE-LEMS 90

Query: 53  LIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-- 109
           L+ SDI ++V++KIV ++  +    +          V + + K +  +     +DF    
Sbjct: 91  LLESDIAISVSEKIVTDVKQELVGSRKKIGSNTGKIVEDALKKSIHDVMSANVFDFDEFI 150

Query: 110 ----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               +P  I+ VG+NG GKTT I K++ ++      V++AAGDTFR+ AIDQ+ + A+R 
Sbjct: 151 DSLEKPVNIVFVGINGTGKTTSIAKIAHRLKAMNKSVVIAAGDTFRAGAIDQIAVHAERI 210

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +  + G D AA+ Y+A + A+A   DV++ DTAGR+H N  LMA + K+ RV    
Sbjct: 211 GVKLIKHQEGGDPAAVVYDAVQYAKAHDSDVVLSDTAGRMHTNVNLMAQLQKICRVSP-- 268

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  VL V +A  G +A+ + E F+      G I+TK D  ++GG  I I      P
Sbjct: 269 ----PDLVLFVDEAVAGNDAVERAEQFNEAVPVDGSILTKTDADSKGGAAISIAYITGKP 324

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + FLG+G+   DL+ F  + F   I 
Sbjct: 325 IVFLGLGQEYEDLKKFDPRWFVDQIF 350


>gi|314966099|gb|EFT10198.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL082PA2]
 gi|327328024|gb|EGE69793.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL103PA1]
          Length = 393

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 113/293 (38%), Positives = 179/293 (61%), Gaps = 5/293 (1%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           +++  L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S  
Sbjct: 97  NSNNALARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS 156

Query: 83  RVLYDV--SELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
               +V   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G
Sbjct: 157 AHAREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEG 216

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +      VDV+++
Sbjct: 217 KTVLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLV 276

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   T
Sbjct: 277 DTAGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVT 334

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G++++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   + G
Sbjct: 335 GIVLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNFVTGLMG 387


>gi|302506196|ref|XP_003015055.1| hypothetical protein ARB_06815 [Arthroderma benhamiae CBS 112371]
 gi|291178626|gb|EFE34415.1| hypothetical protein ARB_06815 [Arthroderma benhamiae CBS 112371]
          Length = 504

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 12/278 (4%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPL 99
           + +E+   L+ +D+ V + Q++ + +        +        + +      +  ++ P 
Sbjct: 1   MIKEICAALLSADVNVRLVQQLRKSIKAAVQLPSIPPAVNKKRLIQKAVFDQLVALVDPH 60

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           ++PF      + +VI++VG+ G GKTT   KL++     G K  L   DTFR+ A DQLK
Sbjct: 61  AEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKLARHYQTKGFKAALVCADTFRAGAFDQLK 119

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A +    +  S   +D   ++ E   + + ++ D++I+DT+GR      L A + ++ 
Sbjct: 120 QNATKAKIPYYGSLTQTDPVVVSSEGVAKFKKERFDIIIVDTSGRHRQEEDLFAEMTQIQ 179

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
             +K      P   + VLD+T GQ A  Q   F + A    +I+TK DG A GGG I  V
Sbjct: 180 SAIK------PDQTIMVLDSTIGQAAETQSAAFKSAADFGAIIITKTDGHAAGGGAISAV 233

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
              + P+ FLG GE + DLE F  + F   + G  D  
Sbjct: 234 AATRTPIIFLGTGEHMLDLERFAPRPFVQKLLGMGDMA 271


>gi|13357648|ref|NP_077922.1| signal recognition particle [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762113|ref|YP_001752172.1| signal recognition particle protein [Ureaplasma parvum serovar 3
           str. ATCC 27815]
 gi|183508525|ref|ZP_02958049.1| signal recognition particle protein [Ureaplasma parvum serovar 14
           str. ATCC 33697]
 gi|11275264|pir||C82936 signal recognition particle UU091 [imported] - Ureaplasma
           urealyticum
 gi|6899044|gb|AAF30497.1|AE002108_10 signal recognition particle [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827690|gb|ACA32952.1| signal recognition particle protein [Ureaplasma parvum serovar 3
           str. ATCC 27815]
 gi|182675962|gb|EDT87867.1| signal recognition particle protein [Ureaplasma parvum serovar 14
           str. ATCC 33697]
          Length = 448

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 140/298 (46%), Gaps = 17/298 (5%)

Query: 25  SLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           S ++ + + +  I    + + +  E+   L+ +D+ + V +K ++ +  K     V   +
Sbjct: 11  SKQMSKKLKNATIVEEDIKE-LLSEIRIALLDADVNLLVVKKFIKNIKEKTIGLYVEANQ 69

Query: 84  V-----LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
                 L  + + + ++L   +KP N   S     I++VG+ G GKTT  GKL+    + 
Sbjct: 70  KPADLVLKIIKDELVEILGKENKPVNTAKSQ--LKIMMVGLQGSGKTTTTGKLANYFKNK 127

Query: 139 -GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              K +L A D +R AAIDQL+  A +   DF   E       +   A  +A   + +++
Sbjct: 128 YNKKPLLVAADIYRPAAIDQLRTLAKQVRVDFW-EEGTQRPDLIVKNALNKADENENNLI 186

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           I+DTAGRL  N  LM  +  + + L       P  V  V+DA  GQ+ +     F+    
Sbjct: 187 IVDTAGRLQTNEELMQELVNVKKTLN------PDEVFLVVDAMAGQDIINVATEFNNWLK 240

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            TG+I+TK+D  AR G ++ +     IP+ F G GE I  ++ F  +  +  I G  D
Sbjct: 241 LTGIIVTKLDSDARAGAVLSLTSLLNIPIKFTGTGEKIGSIDSFYPERMADRILGLGD 298


>gi|254526943|ref|ZP_05138995.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9202]
 gi|221538367|gb|EEE40820.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9202]
          Length = 419

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/312 (32%), Positives = 175/312 (56%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ + + W+ KL +G   T       + D +    L     ++LE LLIR+D+G+    
Sbjct: 105 QISIDEIDWLTKLRRGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDSTD 164

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGVN 120
           K++  L TK   + V  +  +  + + +  ++                 + +V L+VGVN
Sbjct: 165 KVINSLRTKLNEEVVGGEAGIKFLKQELKLIIDKPIINSGTELLVPQKGKLNVWLLVGVN 224

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+   S +    ++AA DTFR+AA++QLK+W +R++ D + ++  + D A
Sbjct: 225 GVGKTTTLGKLAYLSSKSNYTTLIAAADTFRAAAVEQLKVWGERSNVDVISNQSKNADPA 284

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+ +  D+L++DTAGRL   + LM  + K+ +++ +  P A    L VLDA
Sbjct: 285 AVVFDAINSAKKRNADLLLVDTAGRLQTKNNLMDELAKIKKIIDKKVPDAIVESLLVLDA 344

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN L+Q + F   A  +G I+TK+DGT+RGG  + +     +P+ F+G GEGI DL 
Sbjct: 345 SQGQNGLKQAKSFAKSADLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIGAGEGIQDLR 404

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 405 PFNSYEFVEALL 416


>gi|330508423|ref|YP_004384851.1| signal recognition particle-docking protein FtsY [Methanosaeta
           concilii GP-6]
 gi|328929231|gb|AEB69033.1| signal recognition particle-docking protein FtsY [Methanosaeta
           concilii GP-6]
          Length = 388

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 97/285 (34%), Positives = 149/285 (52%), Gaps = 14/285 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIH 93
           I+  + L++ +   LE  L+ SD+ + VA++IV E+ +    K   +      ++E  + 
Sbjct: 107 ILEEKDLEEPMW-ALEMALMESDVALPVAEEIVREVKSDLVGKKKKIGSDTGQLAEDSLR 165

Query: 94  KMLMPLSKPFNWDF------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             L+ L    + DF        +P  IL VGVNG GKTT I K++K + D    V+LAAG
Sbjct: 166 NALITLLSKNHLDFDEYIRAKDKPVKILFVGVNGTGKTTSIAKVAKYLMDQSYSVVLAAG 225

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+ AI+QL++  +      V  + G D AA+ ++A + A+A   DV++ DTAGRLH 
Sbjct: 226 DTFRAGAIEQLEVHGNNLGLKVVKHKTGGDPAAVIFDAIEYARAHNKDVVLADTAGRLHT 285

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           N  LM  + K++RV        P  ++ V +A  G +A+ +  +F+      G I+TK D
Sbjct: 286 NINLMDQMRKIVRVTT------PDLLIFVDEAIAGNDAVERARLFNESVPIDGSILTKTD 339

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             A+GG  I I      PV FLGVG+   DL  F  +     + G
Sbjct: 340 ADAKGGSAISIAYITGKPVLFLGVGQTYPDLVKFEPEWLVNRLMG 384


>gi|56416940|ref|YP_154014.1| signal recognition particle protein [Anaplasma marginale str. St.
           Maries]
 gi|222475306|ref|YP_002563723.1| signal recognition particle protein (ffh) [Anaplasma marginale str.
           Florida]
 gi|254995122|ref|ZP_05277312.1| signal recognition particle protein (ffh) [Anaplasma marginale str.
           Mississippi]
 gi|255004414|ref|ZP_05279215.1| signal recognition particle protein (ffh) [Anaplasma marginale str.
           Virginia]
 gi|56388172|gb|AAV86759.1| signal recognition particle protein [Anaplasma marginale str. St.
           Maries]
 gi|222419444|gb|ACM49467.1| signal recognition particle protein (ffh) [Anaplasma marginale str.
           Florida]
          Length = 451

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S +  +   +  +   R + D     V E++   L+ +D+ + V ++ + ++ +K   
Sbjct: 2   FDSLAKGIASAVQKLGGRREISDKDFDLVLEDVTQALLDADVNLMVVEQFIGDVKSKIVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  + E + ++L       +      P  I++VG+ GVGKTT   K+
Sbjct: 62  GEVVKGVLPEQMIIKLMEECLIEVLGNEKSELDLS-GKAPVAIMMVGLQGVGKTTNTVKV 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+  +  KV++A+ D +R AA +QL + A     D +    G     +A  A K+A+ 
Sbjct: 121 AFKLKKSEKKVLVASLDVYRPAAQEQLGVLAQGVGVDSLPIVEGELPLDIAKRAMKEAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRLH +  ++  +  + + +       P+  + V+D   GQ+A+  V  
Sbjct: 181 GGYDVVIVDTAGRLHIDQEMIGELQLVKKEVS------PNETILVVDCMMGQDAVEVVRG 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     TG I T+ DG +RGG ++ + +    P+ F+  GE   DL+ F     +  I 
Sbjct: 235 FHDKLNLTGTIFTRADGDSRGGAILSMKMVSGCPIKFMSTGEKPEDLDDFYPDRVARRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 NMGD 298


>gi|118786|sp|P27414|DOCK_SULAC RecName: Full=Probable signal recognition particle protein;
           AltName: Full=Docking protein; AltName: Full=P41
 gi|81120|pir||S16482 docking protein - Sulfolobus solfataricus
 gi|1333819|emb|CAA54643.1| signal recognition particle receptor alpha subunit [Sulfolobus
           acidocaldarius]
 gi|3980227|emb|CAA41429.1| docking protein [Sulfolobus solfataricus]
          Length = 369

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 93/296 (31%), Positives = 153/296 (51%), Gaps = 19/296 (6%)

Query: 29  KEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
           K    D +  + + +     V EEL   L+ SD+   V +KI+E+L      K VS +  
Sbjct: 78  KRSFFDFLKYKTIKEDDLNDVIEELRFQLLDSDVSYEVTEKILEDLKNNLIGKKVSRREE 137

Query: 85  LYD-----VSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           + +     + + I ++L    K            +P VI+  GVNGVGKTT I K+   +
Sbjct: 138 VEEIVINTLKKSITEILTKNQKTDLIEKIRSSGKKPFVIIFFGVNGVGKTTTIAKVVNML 197

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
               L  ++AA DTFR+AA +QL   A +     +  + G+D A++A++A   A+++ +D
Sbjct: 198 KKNNLSTIIAASDTFRAAAQEQLAYHASKLEVQLIRGKYGADPASVAFDAISFAKSRNID 257

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V++IDTAGR+H +S L+  + +++R+ K      P   + +LD+  G +AL Q   F   
Sbjct: 258 VVLIDTAGRMHIDSDLVEELKRVLRIAK------PDFRILILDSLAGSDALEQARHFENN 311

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            G   +I+TK+D  A+GG  + +    K PV ++GVG+  +DL PF    F   I 
Sbjct: 312 VGYDAVILTKVDADAKGGIALSLAYELKKPVVYMGVGQNYDDLIPFSPDWFVERIF 367


>gi|260654905|ref|ZP_05860393.1| signal recognition particle protein [Jonquetella anthropi E3_33 E1]
 gi|260630407|gb|EEX48601.1| signal recognition particle protein [Jonquetella anthropi E3_33 E1]
          Length = 453

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 150/306 (49%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S   +L+     + +  +L +        E+   L+ +D+   V + +VE +  +   
Sbjct: 2   FDSLKNRLEGIFDSLRNRGKLSENDVADSLREVRRALLEADVNYKVVRDLVERIRVRAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       Q+V+  V E +  ++              P  +L+VG+ G GKTT   KL
Sbjct: 62  RNVLESITPAQQVISVVFEELVALMGGGKSNLKIS-PKPPTTVLMVGLQGSGKTTSSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQ 190
           ++++  +  K +L A D  R AA+ QL+I A      F+  E   +D   L  ++ K A 
Sbjct: 121 ARRIRPS-HKPLLVACDLRRPAAVKQLEILAKSAEVGFLGPENDKTDLFDLVRQSRKYAA 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I DTAGRL  +  LM  + ++   ++      P  +L V+D+ +GQ AL   E
Sbjct: 180 DHLQDLIIYDTAGRLAIDEELMTELDRLKSTVQ------PDEILLVVDSMSGQEALNVAE 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FHA  G TG+++TK+DG ARGG  + ++    +PV F GVGEGI+  E F A+  +  I
Sbjct: 234 TFHARLGLTGIVLTKLDGDARGGAALAVLAATGVPVKFAGVGEGIDAFEEFDARRMAERI 293

Query: 311 TGCLDY 316
            G  D 
Sbjct: 294 MGMGDL 299


>gi|322378714|ref|ZP_08053145.1| signal recognition particle protein [Helicobacter suis HS1]
 gi|321148857|gb|EFX43326.1| signal recognition particle protein [Helicobacter suis HS1]
          Length = 444

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 145/299 (48%), Gaps = 15/299 (5%)

Query: 26  LKLKEGITDIISSRRLDDGV------REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +   + ++  R  D         EEL+  L+R+D+   V +++V+ +  K  AK +
Sbjct: 3   DTLTQSFKNALAKIRFQDDTKALEKALEELKKALLRNDVHHKVVKELVKNIEAKTKAKGI 62

Query: 80  SVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
             Q+    + E + ++L +P            P ++L+ G+ G GKTT   KL+  +   
Sbjct: 63  GKQQFFDALQESLLEILSVPGCSSGFVYAPTPPTIVLMCGLQGGGKTTTCAKLAHYLKTR 122

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QL++   +   +    E       +A  A ++A+  + DV+I
Sbjct: 123 HKKVLLVACDLERLAAVEQLQVLGTQIGVEVFYQE--GSILEIAKGALERAKEGQFDVVI 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  +  +  ++K      P     V DA +GQ+ +R    FH   G 
Sbjct: 181 VDSAGRLAIDQNLMQELKALKDLIK------PSETFYVADALSGQDGVRSAGTFHTEIGL 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           +G++++K D  ++GG  + I    +IP+ F+G GE I DL+ F+    +  + G  D  
Sbjct: 235 SGVVLSKFDSDSKGGVALGIAHQLQIPLRFIGHGEKIPDLDIFMPDRIANRLMGAGDIA 293


>gi|282854590|ref|ZP_06263925.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes J139]
 gi|282582172|gb|EFB87554.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes J139]
 gi|314981871|gb|EFT25964.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL110PA3]
          Length = 396

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 113/293 (38%), Positives = 179/293 (61%), Gaps = 5/293 (1%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           +++  L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S  
Sbjct: 100 NSNNALARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS 159

Query: 83  RVLYDV--SELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
               +V   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G
Sbjct: 160 AHAREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEG 219

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +      VDV+++
Sbjct: 220 KTVLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLV 279

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   T
Sbjct: 280 DTAGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVT 337

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G++++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   + G
Sbjct: 338 GIVLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNFVTGLMG 390


>gi|289193001|ref|YP_003458942.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus sp. FS406-22]
 gi|288939451|gb|ADC70206.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus sp. FS406-22]
          Length = 400

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 99/318 (31%), Positives = 158/318 (49%), Gaps = 34/318 (10%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR-------SDIGVAVAQ 64
           S+  + T         L   I  ++    +   + E++ED+L         +D+ + V +
Sbjct: 88  SFFDRFT---------LTRAIKKVLKKEVV--ILEEDIEDVLEELEIELLEADVALEVVE 136

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNW-----DFSHRPHVI 114
           K++E +  +   + +S    + +     V   I  +L                  +P VI
Sbjct: 137 KLIENIKKELVGRKISPDDNVEEITINAVKNAIKNILSQEKIDIEEIIKKNKAQGKPTVI 196

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + VG+NG GKTT I KL+ K+   G  V+LAAGDTFR+ AI+QL+  A       +  + 
Sbjct: 197 VFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNIGVKVIKHKQ 256

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G+D+AA+ Y+A + A+A+ +DV++ DTAGR   N  LM  I K++RV K      P  V+
Sbjct: 257 GADSAAVIYDAIQHAKARGIDVVLADTAGRQATNINLMEEIKKVVRVTK------PDLVI 310

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V DA TG +A+ Q E F+      G+I+TK+D  A+GG  + I      P+ +LGVG+ 
Sbjct: 311 FVGDALTGNDAVCQAEEFNNAVNIDGIILTKVDADAKGGAALSIGYAIGKPILYLGVGQR 370

Query: 295 INDLEPFVAKDFSAVITG 312
            +DL  F A      + G
Sbjct: 371 YSDLIEFDADWMVKKLFG 388


>gi|1095511|prf||2109236F dpa gene
          Length = 369

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 93/296 (31%), Positives = 153/296 (51%), Gaps = 19/296 (6%)

Query: 29  KEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
           K    D +  + + +     V EEL   L+ SD+   V +KI+E+L      K VS +  
Sbjct: 78  KRSFFDFLKYKTIKEDDLNDVIEELRFQLLDSDVSYEVTEKILEDLKNNLIGKKVSRREE 137

Query: 85  LYD-----VSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           + +     + + I ++L    K            +P VI+  GVNGVGKTT I K+   +
Sbjct: 138 VEEIVINTLKKSITEILTKNQKTDLIEKIRSSGKKPFVIIFFGVNGVGKTTTIAKVVNML 197

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
               L  ++AA DTFR+AA +QL   A +     +  + G+D A++A++A   A+++ +D
Sbjct: 198 KKNNLSTIIAASDTFRAAAQEQLAYHASKLEVQLIRGKYGADPASVAFDAISFAKSRNID 257

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V++IDTAGR+H +S L+  + +++R+ K      P   + +LD+  G +AL Q   F   
Sbjct: 258 VVLIDTAGRMHIDSDLVEELKRVLRIAK------PDFRILILDSLAGSDALEQARHFENN 311

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            G   +I+TK+D  A+GG  + +    K PV ++GVG+  +DL PF    F   I 
Sbjct: 312 VGYDAVILTKVDADAKGGIALSLAYELKKPVVYMGVGQNYDDLIPFSPDWFVERIF 367


>gi|157412348|ref|YP_001483214.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9215]
 gi|157386923|gb|ABV49628.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus str. MIT 9215]
          Length = 409

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 103/312 (33%), Positives = 177/312 (56%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ + + W+ KL +G   T       + D +    L     ++LE LLIR+D+G+    
Sbjct: 95  QISIDEIDWLTKLRRGLEETRKGFVTELLDKLGDDPLTPESLDDLETLLIRADVGIDSTD 154

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVN 120
           K++  L TK   + V  +  +  + + +  ++    K    +       + +V L+VGVN
Sbjct: 155 KVINSLRTKLNEEVVGAEAGIKFLKKELKLIIDKPIKNSGTELLVPQKGKLNVWLLVGVN 214

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+   S +    ++AA DTFR+AA++QLK+W +R++ D + ++  + D A
Sbjct: 215 GVGKTTTLGKLAFLSSKSNYTTLIAAADTFRAAAVEQLKVWGERSNVDVISNQSKNADPA 274

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A+ +  D+L++DTAGRL   + LM  + K+ +++ +  P A    L VLDA
Sbjct: 275 AVVFDAINSAKKRNADLLLVDTAGRLQTKNNLMDELAKIKKIIDKKVPDAIVESLLVLDA 334

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN L+Q + F   A  +G I+TK+DGT+RGG  + +     +P+ F+G GEGI DL 
Sbjct: 335 SQGQNGLKQAKSFAKSADLSGAIITKLDGTSRGGVSLAVSEEVNLPIRFIGAGEGIKDLR 394

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 395 PFNSYEFVEALL 406


>gi|315094950|gb|EFT66926.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL060PA1]
          Length = 393

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 114/301 (37%), Positives = 181/301 (60%), Gaps = 7/301 (2%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           +++  L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S  
Sbjct: 97  NSNNALARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS 156

Query: 83  RVLYDV--SELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
               +V   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G
Sbjct: 157 AHAREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEG 216

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +      VDV+++
Sbjct: 217 KTVLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLV 276

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   T
Sbjct: 277 DTAGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVT 334

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319
           G++++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   +    D   E
Sbjct: 335 GIVLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNFVTGL--MGDDSAE 392

Query: 320 K 320
           +
Sbjct: 393 R 393


>gi|193084084|gb|ACF09754.1| signal recognition particle subunit Ffh SRP54 [uncultured marine
           group III euryarchaeote AD1000-40-D7]
          Length = 444

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 144/305 (47%), Gaps = 22/305 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L+  +  I  +  +   + +EL    +  L++SD+ V +A ++ + +  +   
Sbjct: 3   LDALGDALRNTLRKIAGASHISPELIKELVRDIQRALLQSDVNVRLALELSKTIENRALE 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +         + V+  V + +   L       +      P  I++VG+ G GKTT  GKL
Sbjct: 63  EKAPAGMTGREHVVRIVHQELVNALGE-----SRSLKLGPQKIMLVGLYGQGKTTTTGKL 117

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            K     GL + L A D  R AA DQL    ++       S    DAA +  E  K+   
Sbjct: 118 GKHFKKKGLNLGLIAADVHRPAAFDQLSQIGEQIQVPVFGSSDNKDAAKVVKEGLKEFTE 177

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGR   +  L++ +  + ++++      P  +L V+DAT GQ A  Q + 
Sbjct: 178 L--DVVIVDTAGRHALDEELISEMKSISKIVQ------PDEILLVMDATVGQQAGPQAQA 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G +G+I+TK+DG+A+GGG +  V   K P+ F+G GE ++ LE      F + + 
Sbjct: 230 FHDAVGVSGVILTKLDGSAKGGGALSAVAVTKAPIVFVGTGESLDSLETLDPDRFISRLL 289

Query: 312 GCLDY 316
           G  D 
Sbjct: 290 GMGDL 294


>gi|239928696|ref|ZP_04685649.1| docking protein [Streptomyces ghanaensis ATCC 14672]
          Length = 400

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 175/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q
Sbjct: 91  EIPEPTAGRLIRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQ 150

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNG 121
           ++VE L  +           L   + + +  ++ P         + +  P +++VVGVNG
Sbjct: 151 ELVERLRERVKVLGTRTPEELRGLLRQELITLVGPEMDRTVHTENAAGGPGIVMVVGVNG 210

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 211 TGKTTTTGKLARVLVADGNTVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDPASV 270

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+ +    D ++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 271 AFDAVKEGKEMAADAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAP--LDEVLLVLDATT 328

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 329 GQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPF 388

Query: 302 VAKDFSAVITG 312
             + F   + G
Sbjct: 389 EPEAFVDALLG 399


>gi|292654298|ref|YP_003534195.1| signal recognition particle receptor SRalpha [Haloferax volcanii
           DS2]
 gi|33518607|gb|AAO73354.1| signal recognition particle receptor-like protein [Haloferax
           volcanii]
 gi|291372798|gb|ADE05025.1| signal recognition particle receptor SRalpha [Haloferax volcanii
           DS2]
          Length = 456

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 150/285 (52%), Gaps = 14/285 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK-DVSVQRVLYDVSELIH 93
           +I    L+D + E LE  L++SD+ + VA++I+E +  K   +    V+     VSE +H
Sbjct: 176 VIEEEDLEDPLWE-LEMALLQSDVEMQVAEEILETIREKLIGETRKQVESTGQLVSEALH 234

Query: 94  KMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             L  +     +DF        +P  ++  G+NGVGKTT I KL+K     G   +LA G
Sbjct: 235 DALYEVISVGQFDFDQRIAEADKPVTLIFTGINGVGKTTTIAKLAKYFEKQGYSTVLANG 294

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT+R+ A +Q++  A+      +  E G D AA+ Y+  + A+A  +D+++ DTAGRLH 
Sbjct: 295 DTYRAGANEQIREHAEALDKKLIAHEQGGDPAAVIYDGVEYAEAHDIDIVLGDTAGRLHT 354

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           ++ LMA + K+ RV+       P   L V +A  GQ+A+ +   F+  A   G I+TK D
Sbjct: 355 SNDLMAQLEKIDRVVG------PDLTLFVDEAVAGQDAVERARQFNDAAAIDGAILTKAD 408

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             + GG  I I      P+ FLGVG+G + +E F  +     + G
Sbjct: 409 ADSNGGAAISIAYVTGKPILFLGVGQGYDHIEKFDPEQMVERLLG 453


>gi|222478931|ref|YP_002565168.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halorubrum lacusprofundi ATCC 49239]
 gi|254772972|sp|B9LT33|SRP54_HALLT RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|222451833|gb|ACM56098.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halorubrum lacusprofundi ATCC 49239]
          Length = 464

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 137/301 (45%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L+  +  +    RL +     + +E++  L+ +D+ V++  ++ + + T+   
Sbjct: 3   LDDLGTSLRSSLDKLQGKSRLSESDVEEIVKEIQRSLLSADVDVSLVMELSDSIKTRALE 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++        D V +++++ ++ L      +       IL+ G+ G GKTT   K++   
Sbjct: 63  EEPPGGTTAKDHVLKIVYEEMVELVGDST-ELPLENQTILLAGLQGSGKTTSAAKMAWWF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  GL+  +   DTFR  A DQ K   +R   DF       D  A+A E  +       D
Sbjct: 122 SKKGLRPAVIQTDTFRPGAYDQAKQMCERAEVDFYGDPDNDDPVAIAREGLEATAD--AD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I+DTAGR      L+A I ++ R +       P   L VLDA  GQ A  Q   F   
Sbjct: 180 VHIVDTAGRHALEDDLIAEIEEIERAVD------PDRSLLVLDAAIGQGAKEQARQFEKS 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+++TK+DGTA+GGG +  V      + FLG GE + D+E F    F + + G  D
Sbjct: 234 IGIEGVMITKLDGTAKGGGALTAVNETDSSIAFLGTGETVQDIERFEPSGFISRLLGMGD 293

Query: 316 Y 316
            
Sbjct: 294 L 294


>gi|258542793|ref|YP_003188226.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633871|dbj|BAH99846.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636930|dbj|BAI02899.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639983|dbj|BAI05945.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643039|dbj|BAI08994.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646094|dbj|BAI12042.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649147|dbj|BAI15088.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652134|dbj|BAI18068.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655191|dbj|BAI21118.1| signal recognition particle GTPase FFH/SRP54 [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 467

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 144/308 (46%), Gaps = 18/308 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL      +     L +  V E + +    ++ +D+ + V +  V ++  +   
Sbjct: 2   FEALSGKLSGVFDGLAKQGALSEADVLEAMREVRLAMLDADVALPVVKDFVNKVKERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V       Q V   V++ +   L      P N + S  P  +L+VG+ G GKTT  GK
Sbjct: 62  HEVLESISPGQAVAKIVNDALIDALGGAGAVPLNLN-STPPVPVLMVGLQGSGKTTTSGK 120

Query: 131 LSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++      KV+LA+ DT R AA  QL   A++     +    G     +A  A    
Sbjct: 121 LALRLKTRERKKVLLASLDTQRPAAQLQLAQLAEQVGVTSLPIVAGQTPVEIAKRALDTG 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV+I+DTAGRL  +  LM  + ++       D   P   L V+DA TGQ+A+   
Sbjct: 181 RREGYDVVILDTAGRLSIDEALMDEVRQI------RDVTHPAETLLVVDAMTGQDAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG++MT+MDG +RGG  + +      P+  +G GE ++ L+ F  +  +  
Sbjct: 235 KAFNEAVGVTGVVMTRMDGDSRGGAALSMRAITGAPIKLIGTGEKLDGLDEFYPERVAGR 294

Query: 310 ITGCLDYG 317
           I G  D  
Sbjct: 295 ILGLGDIA 302


>gi|269958646|ref|YP_003328433.1| signal recognition particle protein [Anaplasma centrale str.
           Israel]
 gi|269848475|gb|ACZ49119.1| signal recognition particle protein [Anaplasma centrale str.
           Israel]
          Length = 451

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S +  +   +  +   R + D     V E++   L+ +D+ + V ++ + ++ +K   
Sbjct: 2   FDSLAKGIASAVQKLGGRREISDKDFDLVLEDVTQALLDADVNLMVVEQFIGDVKSKIVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V       Q ++  + E + ++L       +      P  I++VG+ GVGKTT   K+
Sbjct: 62  GEVVKGVLPEQMIIKLMEECLIEVLGNEKSGLDLS-GKAPVAIMMVGLQGVGKTTNTVKV 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + K+  +  KV++A+ D +R AA +QL + A     D +    G     +A  A K+A+ 
Sbjct: 121 AFKLKKSEKKVLVASLDVYRPAAQEQLGVLAQGVGVDSLPIVEGELPLDIAKRAMKEAKR 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGRLH +  ++  +  + + +       P+  + V+D   GQ+A+  V  
Sbjct: 181 GGYDVVIVDTAGRLHIDQEMIGELQLVKKEVS------PNETILVVDCMMGQDAVEVVRG 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH     TG I T+ DG +RGG ++ + +    P+ F+  GE   DL+ F     +  I 
Sbjct: 235 FHDKLNLTGTIFTRADGDSRGGAILSMKMVSGCPIKFMSTGEKPEDLDDFYPDRVARRIL 294

Query: 312 GCLD 315
              D
Sbjct: 295 NMGD 298


>gi|322380662|ref|ZP_08054814.1| signal recognition particle protein [Helicobacter suis HS5]
 gi|321146984|gb|EFX41732.1| signal recognition particle protein [Helicobacter suis HS5]
          Length = 444

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 145/299 (48%), Gaps = 15/299 (5%)

Query: 26  LKLKEGITDIISSRRLDDGV------REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +   + ++  R  D         EEL+  L+R+D+   V +++V+ +  K  AK +
Sbjct: 3   DTLTQSFKNALAKIRFQDDTKALEKALEELKKALLRNDVHHKVVKELVKNIEAKTKAKGI 62

Query: 80  SVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
             Q+    + E + ++L +P            P ++L+ G+ G GKTT   KL+  +   
Sbjct: 63  GKQQFFDALQESLLEILSVPGCSSGFVYAPTPPTIVLMCGLQGGGKTTTCAKLAHYLKTR 122

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L A D  R AA++QL++   +   +    E       +A  A ++A+  + DV+I
Sbjct: 123 HKKVLLVACDLERLAAVEQLQVLGTQIGVEVFYQE--GQILEIAKGALERAKEGQFDVVI 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +D+AGRL  +  LM  +  +  ++K L          V DA +GQ+ +R    FH   G 
Sbjct: 181 VDSAGRLAIDQNLMQELKALKDLIKPL------ETFYVADALSGQDGVRSAGTFHTEIGL 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           +G++++K D  ++GG  + I    +IP+ F+G GE I DL+ F+    +  + G  D  
Sbjct: 235 SGVVLSKFDSDSKGGVALGIAHQLQIPLRFIGHGEKIPDLDIFMPDRIANRLMGAGDIA 293


>gi|16081627|ref|NP_393991.1| signal recognition particle protein Srp54 [Thermoplasma acidophilum
           DSM 1728]
 gi|12230635|sp|Q9HKT0|SRP54_THEAC RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|10639683|emb|CAC11655.1| probable signal recognition particle protein [Thermoplasma
           acidophilum]
          Length = 456

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 151/305 (49%), Gaps = 22/305 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S S  L+E I  I  S  +D    +E    L+ +L+++D+ V    ++ +E+  +   
Sbjct: 3   LESFSASLRETIRKITGSSYIDKETVKEISKDLQRILLKADVNVKTVLQVTKEMERRALE 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +           ++  + E + K+L   S     +   +P  I++VG+ G GKTT  GKL
Sbjct: 63  EKPPAGMAHQDYMVRIIYEELLKILGEPS-----NVKLKPQTIMLVGLYGNGKTTTAGKL 117

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++  +  GL   L A D  R AA DQLK  A   +A F   +   D   L     +Q + 
Sbjct: 118 ARFFAKKGLNSGLIAADVHRYAAYDQLKQIASEVNAKFYGDQSEKDPVRLIKHGLEQLKD 177

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
               V IIDT+GR   ++ L   I ++   +      AP  VL ++DAT GQ A  + + 
Sbjct: 178 VA--VKIIDTSGRDSMDAELFDEIRRIKEAV------APDEVLMIIDATMGQQAGPEAKA 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G TG+I+TKMDGTA+GGG +  V    +P+YF+G GE ++DLE F  K F + + 
Sbjct: 230 FNDAIGVTGIIITKMDGTAKGGGALSAVAEIHVPIYFIGTGEHMDDLEVFDPKKFLSRLL 289

Query: 312 GCLDY 316
           G  D 
Sbjct: 290 GLGDL 294


>gi|218884418|ref|YP_002428800.1| Probable signal recognition particle protein [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766034|gb|ACL11433.1| Probable signal recognition particle protein [Desulfurococcus
           kamchatkensis 1221n]
          Length = 296

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 165/303 (54%), Gaps = 15/303 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             +KL + F+    +  E  + ++SSR +L + + EEL+  L+ +D+   VA+ I  EL 
Sbjct: 1   MFKKLREVFS----RFIETASSLLSSREKLLESI-EELKLNLVANDVAYEVAENIASELT 55

Query: 72  TKRYAKDV-SVQRVLYDVSELIHKMLMPLSK--PFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +     + S + ++  + E++      L+     +   S +P  ++ +GVNGVGKTT I
Sbjct: 56  MRVEEGSIKSREELVKALREILLSYFTGLNSIDLLSLANSRKPLKLVFLGVNGVGKTTTI 115

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            K++  M + GLK ++ A DTFR+ A +QLKI ++RT       + GSD AAL Y+A + 
Sbjct: 116 AKVAVYMRENGLKPLMVAADTFRAGAQEQLKIHSERTGIPVFTGKYGSDPAALVYDAIQY 175

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
              +  +V +IDTAGR+H +  L+  + K++RV K      P   + V+DA TG +AL Q
Sbjct: 176 GLNRGFNVFLIDTAGRMHVDVDLVNELKKIVRVAK------PDVKILVVDALTGNDALEQ 229

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F+   G   +++TK+D    GG  + +V   K PV F+GVG+   DL+PF   ++  
Sbjct: 230 ARFFNEAVGVDCVVVTKVDAYEEGGVPLSLVYILKKPVLFIGVGQDYKDLKPFNPIEYVE 289

Query: 309 VIT 311
            I 
Sbjct: 290 RIL 292


>gi|319956456|ref|YP_004167719.1| signal recognition particle subunit ffh/srp54 (srp54)
           [Nitratifractor salsuginis DSM 16511]
 gi|319418860|gb|ADV45970.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Nitratifractor salsuginis DSM 16511]
          Length = 451

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/297 (27%), Positives = 146/297 (49%), Gaps = 14/297 (4%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +   + I   R  D          EL+  L++SD+   V ++++  +  +  A  +
Sbjct: 3   DTLTDSFKNAIGKIRFHDDEKALKKALAELKKALLKSDVHHKVVKELIVTVEKETKAAGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             +  +  + + + ++L           S  P V+L+ G+ G GKTT  GKL+  + +  
Sbjct: 63  GKESFMKALQDELVRILTAKGNQGFVFASRPPTVVLMTGLQGSGKTTTTGKLAYMLKEQK 122

Query: 140 LKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
            K + +AA D  R AA++QL+  A++   D V  +  +    +   A K+A+ +  DV++
Sbjct: 123 KKKVLIAAADLQRLAAVEQLRQIAEQIGVDLVA-DENATPDEVVKRALKKAEDELYDVVL 181

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDTAGRL  +  LM  + ++       D   P  +  V DA TG +A+R  + F    G 
Sbjct: 182 IDTAGRLAIDEELMEELARI------RDLAQPDEIFYVADAMTGMDAVRTAQTFKDKIGI 235

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG+I++K D  ++GG  + I     +P+ F+G GE + DLEPF+ +  ++ + G  D
Sbjct: 236 TGVILSKFDADSKGGVALGIAHQVGVPLRFIGSGEKMPDLEPFIPERITSRLMGAGD 292


>gi|148508291|gb|ABQ76075.1| signal recognition particle 54K protein [uncultured haloarchaeon]
          Length = 465

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 135/305 (44%), Gaps = 22/305 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L+  +  +    RLD+     + +E++  L+ +D+ V++  ++   +  +   
Sbjct: 3   LDNLGSSLRGSLDKLQGKSRLDEDDVEEIVKEIQRSLLSADVEVSLVMELSSSIEDRATG 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++          VL  V E +  ++       + D   +   IL+ G+ G GKTT   K+
Sbjct: 63  EEPPAGTSARDHVLRIVYEELVDLVGD-----STDLPLKSQTILLAGLQGSGKTTSAAKM 117

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +   S  GL+  +   DTFR  A DQ +   +R    F       D   +A E  +    
Sbjct: 118 AWWFSTKGLRPAVIQTDTFRPGAYDQAEQMCERAEVSFYGDPDCDDPVKIAREGIEATAD 177

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D+ I+DTAGR    + L+  I  +   +      AP   L VLDA  GQ A +Q   
Sbjct: 178 --ADIHIVDTAGRHALEADLIDEIEAIDSTV------APDRSLLVLDAAIGQGAKQQARE 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DGTA+GGG +  V      + FLG GE + D+E F    F + + 
Sbjct: 230 FNNAIGIDGVVVTKLDGTAKGGGALTAVNETDSSIAFLGTGETVQDVERFEPNGFISRLL 289

Query: 312 GCLDY 316
           G  D 
Sbjct: 290 GMGDL 294


>gi|110669292|ref|YP_659103.1| signal recognition particle 54K protein [Haloquadratum walsbyi DSM
           16790]
 gi|121687082|sp|Q18EV2|SRP54_HALWD RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|109627039|emb|CAJ53515.1| signal recognition particle 54K protein [Haloquadratum walsbyi DSM
           16790]
          Length = 466

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 135/305 (44%), Gaps = 22/305 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L+  +  +    RLD+     + +E++  L+ +D+ V++  ++   +  +   
Sbjct: 3   LDNLGSSLRGSLDKLQGKSRLDEDDVEEIVKEIQRSLLSADVEVSLVMELSSSIEDRATG 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++          VL  V E +  ++       + D   +   IL+ G+ G GKTT   K+
Sbjct: 63  EEPPAGTSARDHVLRIVYEELVDLVGD-----STDLPLKSQTILLAGLQGSGKTTSAAKM 117

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +   S  GL+  +   DTFR  A DQ +   +R    F       D   +A E  +    
Sbjct: 118 AWWFSTKGLRPAVIQTDTFRPGAYDQAEQMCERAEVSFYGDPDCDDPVKIAREGIEATAD 177

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D+ I+DTAGR    + L+  I  +   +      AP   L VLDA  GQ A +Q   
Sbjct: 178 --ADIHIVDTAGRHALEADLIDEIEAIDSTV------APDRSLLVLDAAIGQGAKQQARE 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G  G+++TK+DGTA+GGG +  V      + FLG GE + D+E F    F + + 
Sbjct: 230 FNNAIGIDGVVVTKLDGTAKGGGALTAVNETDSSIAFLGTGETVQDVERFEPNGFISRLL 289

Query: 312 GCLDY 316
           G  D 
Sbjct: 290 GMGDL 294


>gi|329114608|ref|ZP_08243367.1| Signal recognition particle protein [Acetobacter pomorum DM001]
 gi|326696088|gb|EGE47770.1| Signal recognition particle protein [Acetobacter pomorum DM001]
          Length = 481

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 144/308 (46%), Gaps = 18/308 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL      +     L +  V E + +    ++ +D+ + V +  V ++  +   
Sbjct: 16  FEALSGKLSGVFDGLAKQGALSEADVLEAMREVRLAMLDADVALPVVKDFVNKVKERAVG 75

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V       Q V   V++ +   L      P N + S  P  +L+VG+ G GKTT  GK
Sbjct: 76  HEVLESISPGQAVAKIVNDALIDALGGAGAVPLNLN-STPPVPVLMVGLQGSGKTTTSGK 134

Query: 131 LSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++      KV+LA+ DT R AA  QL   A++     +    G     +A  A    
Sbjct: 135 LALRLKTRERKKVLLASLDTQRPAAQLQLAQLAEQVGVTSLPIIAGQTPVEIAKRALDTG 194

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV+I+DTAGRL  +  LM  + ++       D   P   L V+DA TGQ+A+   
Sbjct: 195 RLEGYDVVILDTAGRLSIDEALMDEVRQI------RDVTHPAETLLVVDAMTGQDAVNTA 248

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+   G TG++MT+MDG +RGG  + +      P+  +G GE ++ L+ F  +  +  
Sbjct: 249 KAFNEAVGVTGVVMTRMDGDSRGGAALSMRAITGAPIKLIGTGEKLDGLDEFYPERVAGR 308

Query: 310 ITGCLDYG 317
           I G  D  
Sbjct: 309 ILGLGDIA 316


>gi|284174532|ref|ZP_06388501.1| signal recognition particle receptor protein [Sulfolobus
           solfataricus 98/2]
 gi|13813490|gb|AAK40678.1| Signal recognition particle protein (docking protein) (srpR)
           [Sulfolobus solfataricus P2]
          Length = 266

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 83/271 (30%), Positives = 144/271 (53%), Gaps = 14/271 (5%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFN--- 104
           +   L+ SD+   V +KI+E+L      K V     L   V + + K +  +    N   
Sbjct: 1   MRYQLLESDVSFEVTEKILEDLKENIIGKKVKRSDDLERIVKDSLKKSITEIITKNNAIN 60

Query: 105 ----WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                  S +P++I+  G+NGVGKTT I K +  +   GL  +++A DTFR+AA +QL++
Sbjct: 61  VLEEIKKSPKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSCIISASDTFRAAAQEQLEV 120

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            +       +    G D A++A++A + A+++ +DV++IDTAGR+H ++ L+     + R
Sbjct: 121 HSRNLEIPLIKGRYGGDPASVAFDAIRAAKSRGIDVVLIDTAGRMHTDTDLVNE---LKR 177

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V+    P+     + VLD+  G +AL Q + F    G   +I+TK+D   +GG ++ +  
Sbjct: 178 VVNIAKPNLK---ILVLDSLGGNDALEQAKYFENNVGFDLVILTKVDADVKGGVILSLAY 234

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
               PV +LG+G+  +DL PF A+ F   + 
Sbjct: 235 ELNKPVGYLGIGQAYDDLIPFNAEWFIQRLF 265


>gi|150016057|ref|YP_001308311.1| signal recognition particle-docking protein FtsY [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902522|gb|ABR33355.1| signal recognition particle-docking protein FtsY [Clostridium
           beijerinckii NCIMB 8052]
          Length = 302

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 124/302 (41%), Positives = 186/302 (61%), Gaps = 5/302 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   KL +G A T   L + I + ++ +  +D+ + EELE++LI SDIG+     I+E L
Sbjct: 4   NLFNKLKEGLAKTRDGLTDKINEALNLAVTIDEDLYEELEEILIMSDIGMDTTVDIIERL 63

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K   + ++  + +   + E+I  +L+  +     D      V+L++GVNGVGKTT IG
Sbjct: 64  RGKIRKEKINDPQEVKPALKEVIRDILLEGTYE---DDEKEKKVMLIIGVNGVGKTTSIG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+ K    G KV+LAA DTFR+AAIDQL++W+ R   D V  + GSD AA+ ++A + +
Sbjct: 121 KLAAKNKQEGKKVLLAAADTFRAAAIDQLEVWSSRAEVDIVKHQEGSDPAAVVFDAIEAS 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+ VD+LI DTAGRLHN   LM  + K+ R++ R         L VLDATTGQNA+ Q 
Sbjct: 181 KARNVDLLICDTAGRLHNKKNLMNELEKINRIIDRELQGYRKETLLVLDATTGQNAVIQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F       G+I+TK+DGTA+GG ++ I  +  IPV ++GVGEGI+DL+ F A+ F+  
Sbjct: 241 KQFMEACPIDGIILTKLDGTAKGGVVLSIKQSLNIPVRYIGVGEGIDDLQTFDAEGFAEA 300

Query: 310 IT 311
           + 
Sbjct: 301 LI 302


>gi|146416143|ref|XP_001484041.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 560

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 141/321 (43%), Gaps = 32/321 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELL---TKRYA 76
            A    +L++ ++ + S    +   + +++   L+ SD+ V +  K+ + +     K   
Sbjct: 17  LAELGSRLRDALSGVSSGSEEEIQAMIKDICTALLESDVNVKLVAKLRDNIKAKVKKEVR 76

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP----------------------HVI 114
            D +       + +++   L  L          +                       H+I
Sbjct: 77  NDEAAANKRKKLQKIVFDELCALVDSHEEPPKPKKLSQQAKQKSIRGKKITKNNAESHII 136

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + VG+ G GKTT   KL+      G KV L   DTFR+ A DQLK  A ++   +  S +
Sbjct: 137 MFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNATKSLIPYYGSYL 196

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            +D   +A+E   + + +K D++I+DT+GR      L   + ++   ++      P   +
Sbjct: 197 ETDPVKVAHEGVVKFRKEKFDIIIVDTSGRHKQEQSLFDEMVQISEAVQ------PTQTI 250

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+D + GQ A  Q   F   +    +I+TKMDG A+GGG I  V   + P+ F+G GE 
Sbjct: 251 MVMDGSIGQAAELQARAFKETSDFGSIILTKMDGHAKGGGAISAVAATQTPIVFIGTGEH 310

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           + DLE F    F + + G  D
Sbjct: 311 VGDLETFRPSAFISKLLGIGD 331


>gi|146087779|ref|XP_001465902.1| signal recognition particle [Leishmania infantum JPCM5]
 gi|134070003|emb|CAM68333.1| putative signal recognition particle [Leishmania infantum JPCM5]
 gi|322499389|emb|CBZ34462.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 519

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQK----IVEELLT 72
            A    K+ + I  + +   L +D V+E   E+   L+++D+ V + +K    I  EL  
Sbjct: 3   LAELGQKIGQAIHRMSAKSMLGEDDVKELMNEIARALLQADVNVTIVKKLQVSIKTELAL 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                 ++ +++L + V   + ++L P  KPF      + +V++ VG+ G GKTT   K 
Sbjct: 63  AEEGAGLNKRKILQNAVFNGLKRILDPGVKPF-IPVKGKQNVVMFVGLQGSGKTTSCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQL+  A +    F  S   +D  A+A E   + + 
Sbjct: 122 AVYFQRKGFKTALVCADTFRAGAYDQLRQNATKAKVRFYGSLTEADPVAIAKEGVAELKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K D++I+DT+GR    S L   + ++   +K      P+ ++ V+ AT GQ    Q   
Sbjct: 182 EKYDLIIVDTSGRHKQESALFEEMKQVEEAVK------PNDIVFVMSATDGQAVEEQARN 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F  +     +I+TK+D   +GGG +  V   + P+ F+G GE   D + F  + F   + 
Sbjct: 236 FKEMVAVGSVIVTKLDCQTKGGGALSAVAATRSPIVFIGTGEHFEDFDLFNPERFVQKML 295

Query: 312 GCLDYG 317
           G  D G
Sbjct: 296 GMGDIG 301


>gi|145514351|ref|XP_001443086.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410447|emb|CAK75689.1| unnamed protein product [Paramecium tetraurelia]
          Length = 507

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 136/305 (44%), Gaps = 15/305 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   +  +  +  +D+ + +    E+   L+++D+     +K+ E++  +   
Sbjct: 3   LAELGKSINAALQKLNKAPVVDEALVDQILGEIAMALLKADVNAKFIKKLREDVKMEFKL 62

Query: 77  KDVSVQRVLYDVSELIHK----MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            +         + + +      ML    KPF      + +VI+ VG+ G GKTT   K +
Sbjct: 63  CEEENINHQKLIQKAVVDGLTRMLESDRKPFQPK-KGKQNVIMFVGLQGSGKTTTCTKYA 121

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G KV L   DTFR+ A DQLK  A +    F  S   +D   ++ E     + +
Sbjct: 122 YYYQKKGWKVALVCADTFRAGAFDQLKQNATKVRVPFYGSYTEADPVQISQEGVNVFKKE 181

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             +++I+DT+GR    + L   + ++   +K      P  ++ V+D++ GQ    Q   F
Sbjct: 182 AFEIIIVDTSGRHKQENDLFEEMKQVEAAVK------PDDIVFVMDSSIGQACYDQALAF 235

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                   +I+TK+DG A+GGG +  V   + P+ F+G GE  +DLE F A  F   + G
Sbjct: 236 KKAVNVGSVIITKLDGHAKGGGALSAVAATESPIVFIGEGEHFDDLESFEASSFVRRLLG 295

Query: 313 CLDYG 317
             D  
Sbjct: 296 LGDIN 300


>gi|229092889|ref|ZP_04224023.1| Cell division protein ftsY [Bacillus cereus Rock3-42]
 gi|228690511|gb|EEL44294.1| Cell division protein ftsY [Bacillus cereus Rock3-42]
          Length = 260

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 149/247 (60%), Gaps = 3/247 (1%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVN 120
            +++++L  +   +++   R +  V       +      F  +         V+L VGVN
Sbjct: 1   MELIDQLKEEVQRRNIQDPREVQAVISEKLIEIYKGDSDFTNEVNMQKEGLTVVLFVGVN 60

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD AA
Sbjct: 61  GVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDPAA 120

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A + A+A+ VDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+DAT
Sbjct: 121 VMYDAVQAAKARNVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVIDAT 180

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL+ 
Sbjct: 181 TGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDLQQ 240

Query: 301 FVAKDFS 307
           F  + + 
Sbjct: 241 FDPEQYV 247


>gi|118473366|ref|YP_886764.1| signal recognition particle-docking protein FtsY [Mycobacterium
           smegmatis str. MC2 155]
 gi|118174653|gb|ABK75549.1| signal recognition particle-docking protein FtsY [Mycobacterium
           smegmatis str. MC2 155]
          Length = 491

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 111/297 (37%), Positives = 173/297 (58%), Gaps = 11/297 (3%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           A +   L   +  ++    LD+   EE+ED L+ +D+G  V + ++  L T+  AK+V  
Sbjct: 200 AKSQNALGRSMLGLLGGGDLDEESWEEVEDTLLIADLGPVVTESVIGALRTEMAAKNVRT 259

Query: 82  QRVLYDVSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +    D   ++ ++LM   +P           + +P V+LVVGVNG GKTT +GKL++ +
Sbjct: 260 E---ADARAVLREVLMAELRPELPRSIRALPHADKPSVLLVVGVNGTGKTTTVGKLARVL 316

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G +V+L A DTFR+AA DQL+ W  R  A+ V    G+D A++A++A     +   D
Sbjct: 317 VADGRRVVLGAADTFRAAAADQLQTWGSRVGAEVVRGPEGADPASVAFDAVDHGISAGAD 376

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+++DTAGRLH  + LM  +GK+ RV+++    A   VL VLDAT GQN+L Q ++F  V
Sbjct: 377 VVVVDTAGRLHTKTGLMDELGKVKRVVEKR--AAVDEVLLVLDATIGQNSLPQAKVFAEV 434

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    F   + G
Sbjct: 435 VDITGVVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 491


>gi|88604251|ref|YP_504429.1| signal recognition particle protein Srp54 [Methanospirillum
           hungatei JF-1]
 gi|88189713|gb|ABD42710.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanospirillum hungatei JF-1]
          Length = 437

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 132/305 (43%), Gaps = 23/305 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY- 75
             +    LK+ +  +     +D    + + ++L+  L+++D+ V    ++ + +  +   
Sbjct: 2   LDNLGSNLKDALRKLAGKTVIDRAAVEELVKDLQRALLQADVNVKQVMQLSQTIKKRALD 61

Query: 76  ---AKDVSVQRV-LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K V+ +   L  V E +  ++         + +    +IL+ G+ G GKTT   KL
Sbjct: 62  EQPPKGVTAREHVLRIVYEELVALVGQ-----KVEVTLGKQIILMAGLQGSGKTTTTAKL 116

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G++V +   DTFR  A  Q+K   D+            DA  +  E   Q + 
Sbjct: 117 ARFFKRKGMRVAVICADTFRPGAYTQIKTLCDKVHVPCYGDPSEHDARKIVREGLAQLKE 176

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +   V+I+DT GR      L+  I  +  + K            VLDA  GQ A  Q   
Sbjct: 177 E---VIIVDTQGRHALEDDLITEIIDLNEITKAT------HRWLVLDAALGQQAREQARR 227

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH      G+I+TKMDGTA+GGG +  V      + F+G GE I DLE F    + + + 
Sbjct: 228 FHEAVSIDGVIITKMDGTAKGGGAMSAVAETGSGIVFIGQGETIEDLEWFDPNSYISRLL 287

Query: 312 GCLDY 316
           G  D 
Sbjct: 288 GMGDL 292


>gi|227497502|ref|ZP_03927731.1| signal recognition particle receptor [Actinomyces urogenitalis DSM
           15434]
 gi|226833030|gb|EEH65413.1| signal recognition particle receptor [Actinomyces urogenitalis DSM
           15434]
          Length = 325

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 111/324 (34%), Positives = 179/324 (55%), Gaps = 16/324 (4%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           + + +        +++L    A  S    + +  ++S   L +   EE+ED L+ SD+G+
Sbjct: 4   LPSVETPESIPGRMQRLRARLAG-SGGFGKAVLSVLSRGDLTETDWEEIEDTLLTSDLGI 62

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSH--------- 109
            V   ++E L T+    D S    +  V   EL+  +   + +  N              
Sbjct: 63  EVTTALMETLRTQAKVLDTSDPTAIRGVLRRELLALVDPAMDRSLNLAPPQAAEGFTGEG 122

Query: 110 -RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
                +L+VGVNG GKTT  GKL++ +      V++ A DTFR+AA +QL  W +R   +
Sbjct: 123 SPAAAVLMVGVNGTGKTTTCGKLARVLVAQDKTVLMGAADTFRAAAAEQLGTWGERVGVE 182

Query: 169 FVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
            V SE  G+D A++A++A  QA A+ VDV+++DTAGRL N + LM  +GK+ RV++++ P
Sbjct: 183 VVRSEREGADPASVAFDAAYQAAAQGVDVVLVDTAGRLQNKAGLMDELGKIKRVMEKVAP 242

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
                +L VLDATTGQN +RQ ++F    G TG+++TK+DGTA+GG ++ +     +PV 
Sbjct: 243 VG--EILLVLDATTGQNGMRQAQVFSEAVGVTGIVLTKLDGTAKGGIVVTVQRELGVPVK 300

Query: 288 FLGVGEGINDLEPFVAKDFSAVIT 311
            +G+GEG +DL PF  + F   + 
Sbjct: 301 LVGLGEGADDLAPFDPEGFVDALL 324


>gi|329943127|ref|ZP_08291901.1| signal recognition particle-docking protein FtsY [Chlamydophila
           psittaci Cal10]
 gi|332287710|ref|YP_004422611.1| putative cell division protein [Chlamydophila psittaci 6BC]
 gi|313848284|emb|CBY17285.1| putative cell division protein [Chlamydophila psittaci RD1]
 gi|325506713|gb|ADZ18351.1| putative cell division protein [Chlamydophila psittaci 6BC]
 gi|328814674|gb|EGF84664.1| signal recognition particle-docking protein FtsY [Chlamydophila
           psittaci Cal10]
 gi|328914963|gb|AEB55796.1| signal recognition particle-docking protein FtsY [Chlamydophila
           psittaci 6BC]
          Length = 284

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 102/284 (35%), Positives = 150/284 (52%), Gaps = 5/284 (1%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
               I  +   + L   + E  E L   +D G  + +++   L   R   D S  + L  
Sbjct: 5   FSSKIQSLF-KKTLSPDLLEFTESLFYEADFGSDLTEELCSRLRKCRKP-DASTVKDL-- 60

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           VS L+ + L  L           P V L++G NG GKTT + KL+        KVM+ A 
Sbjct: 61  VSSLLRETLDNLPH-VEPCQGQAPMVSLILGTNGSGKTTTVAKLAHYHMSRSEKVMIVAT 119

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFRSA +DQ++ WAD+    FV  + G D AA+AY+    A ++  D ++IDT+GRLH 
Sbjct: 120 DTFRSAGMDQMRCWADKLGCGFVSGKPGGDPAAIAYDGIASAMSRGYDRVLIDTSGRLHT 179

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           ++ L+  + K++ V  ++ P +PH  L  +DAT G N + QV +FH     +GLI+TK+D
Sbjct: 180 HTNLLNELSKIVSVCNKIHPGSPHERLMTIDATLGGNVIEQVRVFHDAIPLSGLILTKVD 239

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G+A+GG L  +    KIP  F+G GE I DLE F    F A + 
Sbjct: 240 GSAKGGTLFRVAKQLKIPTKFVGYGELIGDLEEFHIDRFLAKLF 283


>gi|240047246|ref|YP_002960634.1| Signal recognition particle protein [Mycoplasma conjunctivae
           HRC/581]
 gi|239984818|emb|CAT04805.1| Signal recognition particle protein [Mycoplasma conjunctivae]
          Length = 441

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 80/306 (26%), Positives = 144/306 (47%), Gaps = 21/306 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               S +L++ +T +  S  + +     +  +++  L+ +D+ + V +  + ++  +   
Sbjct: 2   LDFLSGRLQKSLTKMQKSTVISEDDLTSIIRDIKFALLEADVNLLVVKAFISDVKKQVIE 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + ++      Q+ +  + + + K+L   S+     F      I++VG+ G GKTT   KL
Sbjct: 62  QGLTGKLNPQQQFIKILHQNLVKILGNNSQQ--VIFKKPLSKIILVGLQGSGKTTTAAKL 119

Query: 132 SKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           S    +     K +L A D +R AAI+QLK    +   +    +       +A  A + A
Sbjct: 120 SLFAKNKKHSQKPLLVACDIYRPAAIEQLKQLGKQIGIEVFSQDA--TPQEIAKNAIQYA 177

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q    D++I DTAGRL  +  LM  +  + +++       P  +L V DA +GQ+ +   
Sbjct: 178 QDNDFDLIIFDTAGRLAIDEPLMDELVDLKKIIH------PDQILFVTDALSGQDVINVA 231

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F+      G I+TK+D  ARGG  + I    KIP+ F+G GE I+ LE F     +  
Sbjct: 232 QVFNDRIKLNGAIITKLDSDARGGSALSITHLLKIPINFIGSGEKISSLEIFHPNRIADR 291

Query: 310 ITGCLD 315
           I G  D
Sbjct: 292 ILGMGD 297


>gi|119872111|ref|YP_930118.1| GTP-binding signal recognition particle [Pyrobaculum islandicum DSM
           4184]
 gi|158512993|sp|A1RS43|SRP54_PYRIL RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|119673519|gb|ABL87775.1| signal recognition particle subunit FFH/SRP54 (srp54) [Pyrobaculum
           islandicum DSM 4184]
          Length = 433

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 144/303 (47%), Gaps = 18/303 (5%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
                 + +  I     +D+   +EL    +  L+++D+ + + +   E  + +   +  
Sbjct: 4   LGEVFSKLVEKIRGVSYIDEATLQELSREIQRALLKADVPLDMVKTFTENAVKRMREEKP 63

Query: 80  SV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                  + VLY + + + K+L    +P  +    +P+++L++GV G GKTT   KL++ 
Sbjct: 64  PAGIPPREYVLYILYDELVKLLGG-EQPAEFKPVKKPYLVLLLGVEGSGKTTTAAKLARY 122

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           +   G +V L   DT R AA DQLK  A++    F       DA  +A    +  +   +
Sbjct: 123 LVKRGYRVGLVETDTIRPAAFDQLKQLAEKIGVPFYGERDSKDAVEIARRGVQNFK--NM 180

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+IIDTAGR  N   L+  +  +   +       P  V+ V+DAT G+ A  Q E F  
Sbjct: 181 DVVIIDTAGRHKNEEALLQEVKMIYEAVN------PDEVILVIDATVGKLAAAQAEAFMK 234

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
                 +I+TKMD TARGGG +  V+     V F+GVGE +++ + F  + F A + G  
Sbjct: 235 YLPIHSVIITKMDSTARGGGALAAVIKTGARVKFIGVGEDVDEFDLFNPRKFVARVLGMG 294

Query: 315 DYG 317
           D  
Sbjct: 295 DLD 297


>gi|71891959|ref|YP_277689.1| 4.5S-RNP protein [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796065|gb|AAZ40816.1| 4.5S-RNP protein [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 453

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 144/306 (47%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S K+ + I +I+ S RL +   +E    ++  L+  D+ + V    V  +      
Sbjct: 2   FKKLSNKISQSIRNIVGSGRLTENNIKETLNMVKIALLEGDVALPVVHGFVNTVKEGIIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            D++      Q  +  +   + K++   S   N + +  P +IL+VG  G GKTT  GKL
Sbjct: 62  SDINKHLTPGQEFIKIMHASLVKIMGEGSNDLNLN-TQTPSIILIVGAQGSGKTTTTGKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALAYEAFKQA 189
           +K +     K + +A+ D +R A + QLK         F     + +    +   A   +
Sbjct: 121 AKFLKIKKNKKILVASTDVYRPAGVQQLKSLIKSEDIIFFEDCNVRNKPIDILKAASIVS 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           ++   DVL+IDTAG L  +  L++ + +M   +       P   L ++D+  GQ A+  +
Sbjct: 181 RSLSYDVLLIDTAGCLETDDSLLSELAEMHSCVN------PIETLFIVDSMIGQVAINSI 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            +F+     TG+I+TK+DG +RGG  + I      P+ F+G GE I+ LEPF +   +  
Sbjct: 235 NVFNKTLPLTGIILTKLDGDSRGGVALSIKYLTGKPIKFIGTGEKIDALEPFNSYRIAGR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|193084148|gb|ACF09814.1| signal recognition particle subunit Ffh SRP54 [uncultured marine
           group III euryarchaeote SAT1000-53-B3]
          Length = 444

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 145/305 (47%), Gaps = 22/305 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVE-----ELL 71
             +    L+  +  I  +  +   + +EL    +  LI+SD+ V +A ++ +      L 
Sbjct: 3   LDALGDALRNTLRKIAGASHISPELIKELVKDIQRALIQSDVNVRLALELSKTIEYRALE 62

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            K  A     + V+  V + + K +       +      P  I++VG+ G GKTT  GKL
Sbjct: 63  EKAPAGMTGREHVVRIVHQELVKAIGE-----SRSLKLGPQKIMLVGLYGQGKTTTTGKL 117

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            K     GL + L A D  R AA DQL    ++       S    DA  +  E  ++ + 
Sbjct: 118 GKHFKKKGLNLGLIAADVHRPAAFDQLSQIGEQVQVPVFGSSDNKDAGKVVKEGLEEFKE 177

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV+I+DTAGR   +  L++ +  + +++K      P  +L V+DAT GQ A  Q + 
Sbjct: 178 L--DVVIVDTAGRHALDEELISEMKSISKIVK------PDEILLVMDATVGQQAGPQAQA 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G +G+I+TK+DG+A+GGG +  V   K P+ F+G GE ++ LE      F + + 
Sbjct: 230 FHDAVGVSGVILTKLDGSAKGGGALSAVAVTKAPIVFVGTGESLDSLETLDPDRFISRLL 289

Query: 312 GCLDY 316
           G  D 
Sbjct: 290 GMGDL 294


>gi|332157901|ref|YP_004423180.1| signal recognition particle protein [Pyrococcus sp. NA2]
 gi|331033364|gb|AEC51176.1| signal recognition particle protein [Pyrococcus sp. NA2]
          Length = 322

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/263 (33%), Positives = 137/263 (52%), Gaps = 14/263 (5%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKP-------FNWDFSH 109
           + + V   + E +      K V +       + E +   ++ + +P            + 
Sbjct: 62  VALEVVDALKERIKKNLVGKKVKIGTNKEKIIEEAVRDAVLEILRPPRKIDLIEEIKKAE 121

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+VIL VG NG GKTT I KL+  +   G  V++AA DTFR+ AI+Q++  A R     
Sbjct: 122 KPYVILFVGFNGSGKTTTIAKLAHWLKKNGFSVVIAASDTFRAGAIEQIEEHAKRIGVKV 181

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +  + G+D AA+AY+A + A+A+ +DV++IDTAGR   N  LM  + K+ RV K      
Sbjct: 182 IKHKYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTK------ 235

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ V+ V DA  G   + Q   F+      G+I+TK+D  ARGG  + +      P+ F+
Sbjct: 236 PNLVIFVGDALAGNAIIEQAREFNEAVKIDGVILTKLDADARGGSALSVTYATNAPILFV 295

Query: 290 GVGEGINDLEPFVAKDFSAVITG 312
           G+G+G +DL PF  + F   I G
Sbjct: 296 GIGQGYDDLIPFDERWFVERILG 318


>gi|118465902|ref|YP_882948.1| signal recognition particle-docking protein FtsY [Mycobacterium
           avium 104]
 gi|254776221|ref|ZP_05217737.1| signal recognition particle-docking protein FtsY [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|118167189|gb|ABK68086.1| signal recognition particle-docking protein FtsY [Mycobacterium
           avium 104]
          Length = 428

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 112/306 (36%), Positives = 170/306 (55%), Gaps = 5/306 (1%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +   + +L    A +   L   +  +I    LD+   +++ED L+ +D+G  V + ++ +
Sbjct: 125 TEGRLERLRGRLARSQNALGRSLLGLIGGGDLDEDAWQDVEDTLLVADLGPVVTESVIAQ 184

Query: 70  LLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTT 126
           L  +  + DV  +     V    LI+++   L +       +  P V+L+VGVNG GKTT
Sbjct: 185 LRGRLASSDVRTEADAKAVLRDVLINELRPDLDRSIRALPHADHPSVLLIVGVNGTGKTT 244

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A+ V    G+D A++A++A 
Sbjct: 245 TVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWASRVGAEVVRGAEGADPASVAFDAV 304

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            Q  A   DV++IDTAGRLH    LM  + K+ RV+ R    A   VL VLDAT GQN L
Sbjct: 305 DQGIAAGADVVLIDTAGRLHTKVGLMDELDKVKRVVTRR--AAVDEVLLVLDATIGQNGL 362

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F  V   TG ++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    F
Sbjct: 363 AQARVFAEVVEITGAVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAF 422

Query: 307 SAVITG 312
              + G
Sbjct: 423 VDALLG 428


>gi|2130562|gb|AAB58327.1| signal recognition particle receptor alpha subunit [Thermococcus
           zilligii]
          Length = 329

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 97/321 (30%), Positives = 160/321 (49%), Gaps = 30/321 (9%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +S ++   E    + +L              +   I  + +D+ + E   +L + +D+ +
Sbjct: 28  ISGEEKKEEKAGLLDRL--------------LQVEIKEKDVDEAIGELELEL-LEADVAL 72

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNW--------DFSHRP 111
            V  ++ E++  K   K V +       + E + + ++ +  P               +P
Sbjct: 73  EVVDELREKIKGKLVGKKVRIGSDKGKIIEEAVKEAVLEVLTPPRRIDLIEEMRKKEEKP 132

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI  VG NG GKTT I KL+  +   G  V++AA DTFR+ AI+QL+  A R     + 
Sbjct: 133 FVIAFVGFNGGGKTTTIAKLAHWLKKQGFSVVVAASDTFRAGAIEQLEEHAKRVGVKVIK 192

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G+D AA+AY+A + A+A+ +DV++IDTAGR   N  LM  + K++RV K      P 
Sbjct: 193 HSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRNELNRNLMDEMKKIVRVTK------PD 246

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V+ V D+  G + + Q   F+      G+I+TK+D  ARGG  + I      P+ F+GV
Sbjct: 247 LVIFVGDSLAGNSIIEQARQFNEAVRIDGVILTKLDADARGGAALSISHAIGAPILFVGV 306

Query: 292 GEGINDLEPFVAKDFSAVITG 312
           G+G +DL+PF  + F  +I G
Sbjct: 307 GQGYDDLKPFDERWFVDLIFG 327


>gi|150399615|ref|YP_001323382.1| signal recognition particle protein Srp54 [Methanococcus vannielii
           SB]
 gi|166222337|sp|A6UQJ8|SRP54_METVS RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|150012318|gb|ABR54770.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanococcus vannielii SB]
          Length = 450

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 147/308 (47%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVA----QKIVEELLT 72
                  L E +  I       ++L   V ++++  LI+SD+ V +     ++I  + + 
Sbjct: 2   LDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIE 61

Query: 73  KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K  S +  +   V + + K+L    +    D S +  VIL+VG+ G GKTT   KL
Sbjct: 62  EAPPKGFSKKEHIIKIVYDELVKLLGENPQKLELDPSKK-SVILLVGIQGSGKTTSSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQAQ 190
           ++ +   G+K  L A D +R AA  QLK  +++ +      E  +     +  E  ++ +
Sbjct: 121 ARYIQKKGMKPALIAADIYRPAAYQQLKQLSEKINVPLFGDETKTKTPVEIVKEGIEKLK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVLIIDTAGR      L+  + +M  +        P+ ++ V+D T GQ A  Q +
Sbjct: 181 KS--DVLIIDTAGRHKEEESLLEEMKQMKEITN------PNEIILVIDGTLGQQAKNQAK 232

Query: 251 MFHAVAGTTGLIM-TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            F       G I+ TK+DG+A+GGG +  V     P+ F+G GEG+++LE F  K F + 
Sbjct: 233 AFKDAVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLETFDPKKFISR 292

Query: 310 ITGCLDYG 317
           + G  D  
Sbjct: 293 LLGMGDLD 300


>gi|323342051|ref|ZP_08082284.1| cell division protein FtsY [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464476|gb|EFY09669.1| cell division protein FtsY [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 319

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 103/288 (35%), Positives = 152/288 (52%), Gaps = 4/288 (1%)

Query: 20  GFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           G  ST       +  + + + + DD   + L  +LI+SD+ +  AQKI++    K     
Sbjct: 24  GLDSTKASFGNKLKQMFTGKPKFDDAWYDHLLAVLIQSDVSLKSAQKIIKTFR-KNVKAS 82

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           +S +  L  + E+I +      +P+  +   R + ILVVGVNG GKTT   KL+      
Sbjct: 83  MSEEEALETLVEVILRQYGDNLEPYAIE-PGRLNAILVVGVNGSGKTTTCAKLAYNYQQE 141

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G KV+L  GDTFR+A  +QLK+WAD    DFV  +   D A++  +A + A+    DV+I
Sbjct: 142 GYKVLLVGGDTFRAAGSNQLKVWADEIGVDFVGGKDNQDPASVYVDAARYAKEHDFDVMI 201

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
            D+AGRL N   LM  + KM RVL+R      H    V+D  TGQN L Q + F  V   
Sbjct: 202 CDSAGRLQNKVNLMKELEKMKRVLEREVGSIDH-TYLVIDGNTGQNGLSQAKTFTEVTPV 260

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             LI+TK+DG+ +GG L+ I     + V  +G+GE + DL  F  + +
Sbjct: 261 NSLIVTKLDGSPKGGVLLSIKDELDLKVSHIGLGETVGDLRAFDIESY 308


>gi|167044477|gb|ABZ09152.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine crenarchaeote HF4000_APKG6J21]
          Length = 498

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 99/310 (31%), Positives = 156/310 (50%), Gaps = 20/310 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              KL   F+  +    E     ++ + +DD V  ELE  L+ SD+   V   I  +L T
Sbjct: 1   MFEKLGNAFSKAAKSFSEKD---LNEKDIDD-VLSELEISLLESDVATEVIDSIKSDLST 56

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMP----------LSKPFNWDFSHRPHVILVVGVNGV 122
           K     V+ + +   V + + + +            LS   +      P++IL VG+NG 
Sbjct: 57  KLVGSRVNKKEIEDFVKKSLTENISSMFDDAGSVDILSNIKSKTDPQDPYLILFVGINGT 116

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I K++  +    + V++AA DTFR+ AI+QL+   ++ +   +    GSD AA+A
Sbjct: 117 GKTTTIAKIANLLQKNKISVVVAAADTFRAGAIEQLREHINKLNLKLIAQNYGSDPAAVA 176

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A   A++ KVD ++ID+AGR+  N  LM  I K+ +V+       P   + V D+  G
Sbjct: 177 HDALLYAKSHKVDCVLIDSAGRMQTNKNLMEQIAKISKVVS------PDLKIFVGDSLAG 230

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            +A+ Q   FH      G I+TK D  ARGG  + IV   K PV ++G G+G +DLE F 
Sbjct: 231 NDAVSQAREFHKHTTFDGAILTKGDADARGGAALSIVAVTKKPVIYVGTGQGYDDLELFS 290

Query: 303 AKDFSAVITG 312
            + F   + G
Sbjct: 291 KEIFLETVFG 300


>gi|297202635|ref|ZP_06920032.1| signal recognition particle-docking protein FtsY [Streptomyces
           sviceus ATCC 29083]
 gi|197713210|gb|EDY57244.1| signal recognition particle-docking protein FtsY [Streptomyces
           sviceus ATCC 29083]
          Length = 403

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 181/311 (58%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LDD   EE+ED+L+ +D+GVA  Q
Sbjct: 94  EVPEPTAGRLVRLRTRLSRSQNALGKGLLTLLSREHLDDDTWEEIEDILLTADVGVAPTQ 153

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNG 121
           ++V+ L  +           L  +  +EL+  +   + +    +    +P +++VVGVNG
Sbjct: 154 ELVDGLRERVKVLGTRTPDELRGLLRAELLKLVGTEVDRTVRTEPEERKPGIVMVVGVNG 213

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 214 TGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDPASV 273

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+ +   VDV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 274 AFDAVKEGKEMGVDVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAP--LDEVLLVLDATT 331

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF
Sbjct: 332 GQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADDLAPF 391

Query: 302 VAKDFSAVITG 312
             + F   + G
Sbjct: 392 EPEAFVDALIG 402


>gi|311898546|dbj|BAJ30954.1| putative signal recognition particle receptor [Kitasatospora setae
           KM-6054]
          Length = 416

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 178/310 (57%), Gaps = 5/310 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V   +   + +L    + +   L +G+  ++S  RLD+   EE+E+ L+ +D+GV   Q+
Sbjct: 109 VPEPTAGRLVRLRSRLSRSQSTLGKGLLTLLSRDRLDEDTWEEIEETLLTADVGVGATQE 168

Query: 66  IVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGV 122
           +V+ L T+           L   + E + K++   +        H   P V+LVVGVNGV
Sbjct: 169 LVDNLRTRVKVLGTRTPDELRGLLREELVKLIGTEADRTVRSVKHGDGPAVVLVVGVNGV 228

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GKL++ +   G KV+L A DTFR+AA DQL+ W +R  A  V    G D A++A
Sbjct: 229 GKTTTTGKLARVLVADGRKVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEGGDPASVA 288

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A KQ  A  VD +++DTAGRLH  + LM  +GK+ RV+++  P     VL VLDATTG
Sbjct: 289 FDAVKQGIADGVDTVLVDTAGRLHTKTGLMDELGKVKRVVEKHGP--VDEVLLVLDATTG 346

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF 
Sbjct: 347 QNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVISVQRELGVPVKLIGLGEGADDLAPFE 406

Query: 303 AKDFSAVITG 312
              F   + G
Sbjct: 407 PGAFVDALLG 416


>gi|57640588|ref|YP_183066.1| signal recognition particle GTPase [Thermococcus kodakarensis KOD1]
 gi|57158912|dbj|BAD84842.1| signal recognition particle GTPase [Thermococcus kodakarensis KOD1]
          Length = 342

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/264 (34%), Positives = 135/264 (51%), Gaps = 15/264 (5%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVL-----YDVSELIHKMLMPLSK----PFNWDFS 108
           + +   + + E++  K   + V +           + E I ++L P  K           
Sbjct: 83  VALETVEALREKIKEKLVGRKVRIGTNKGKIIEEALKEAILEILTPEKKIDLLQMIKSKE 142

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P VI  VG NG GKTT I KL+  +   G  V++AA DTFR+ AI+QL+  A R    
Sbjct: 143 DKPFVIAFVGFNGSGKTTTIAKLAHWLKKNGFSVVIAASDTFRAGAIEQLEEHAKRVGVK 202

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +  + G+D AA+AY+A + A+A+ +DV++IDTAGR   N  LM  + K+ RV K     
Sbjct: 203 VIKHDYGADPAAVAYDAIQHAKARGIDVVLIDTAGRNELNRNLMDEMKKIARVTK----- 257

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  V+ V D+  G   + Q + F+      G+I+TK+D  ARGG  + I      P+ F
Sbjct: 258 -PDLVIFVGDSLGGNAVVEQAKQFNEAVRIDGVILTKLDADARGGAALSISHAIGAPILF 316

Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312
           +GVG+G  DL PF  K F   I G
Sbjct: 317 VGVGQGYEDLRPFDEKWFVERIFG 340


>gi|242398400|ref|YP_002993824.1| Signal recognition particle GTPase [Thermococcus sibiricus MM 739]
 gi|242264793|gb|ACS89475.1| Signal recognition particle GTPase [Thermococcus sibiricus MM 739]
          Length = 300

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 152/305 (49%), Gaps = 20/305 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F     KL   +  +    IS + +++ + +   +L + +D+ + V  ++ E +  K   
Sbjct: 2   FGKLKEKLSLFVDKVAQTEISEKDVENALWDLELEL-LEADVALEVVDELKERIKEKLVG 60

Query: 77  KDVSVQRVLYD-----VSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVGKTTV 127
           + V +     +     V + + ++L P               +P VI+ VG NG GKTT 
Sbjct: 61  QKVKIGTNKRNIVENAVRDAVLEVLTPERHIDLLEMIKSKEEKPFVIVFVGFNGGGKTTT 120

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL+  +   GL V++AA DTFR+ AI+Q++  A R     +     SD AA+AY++ +
Sbjct: 121 IAKLANWLKKNGLSVVIAASDTFRAGAIEQVEEHAKRVGVKVIKHGYKSDPAAVAYDSIE 180

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +DV+++DTAGR   N  LM  + K+ RV K      P  V+ V D+  G   L 
Sbjct: 181 HAKARGIDVVLVDTAGRNELNRNLMDEMKKIARVTK------PDLVIFVGDSLAGNAILE 234

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q   F+      G+I+TK+D  ARGG  + +      P+ F+G+G+G +DL PF  K   
Sbjct: 235 QARQFNEAVKIDGVILTKLDADARGGTALSVSHAIGAPILFVGIGQGYDDLIPFDEKWIL 294

Query: 308 AVITG 312
             I G
Sbjct: 295 EKIFG 299


>gi|224438372|ref|ZP_03659299.1| signal recognition particle protein [Helicobacter cinaedi CCUG
           18818]
 gi|313144814|ref|ZP_07807007.1| signal recognition particle protein [Helicobacter cinaedi CCUG
           18818]
 gi|313129845|gb|EFR47462.1| signal recognition particle protein [Helicobacter cinaedi CCUG
           18818]
          Length = 447

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 140/301 (46%), Gaps = 15/301 (4%)

Query: 26  LKLKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L      II+  R  D  +      ++L+  L+++D+     ++I++E+  +  +  +
Sbjct: 3   DTLTSSFKGIINKIRFADDEKSLQRACDDLKKTLLKNDVYHKATKQIIQEVSQRTKSNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q  +  + E ++++L              P VIL++G+ G GKTT   KL+  +   G
Sbjct: 63  GKQSFMNALQESLNEILKSKKSYGISFSPTPPSVILMMGLQGSGKTTSSAKLALYLKQKG 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA---ALAYEAFKQAQAKKVDV 196
            KV+L A D  R AAI+QL   A     D       S       +A EA ++A     DV
Sbjct: 123 KKVLLVACDLHRLAAIEQLSQLAASIEVDIFTPNQSSKPENAVQVAKEAKQKATNTHYDV 182

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +IID+AGRL  +  LM  + ++   +           L V D+ +GQ+ +R  + F+   
Sbjct: 183 VIIDSAGRLSIDEALMQELLEIKDSINAT------ECLYVADSLSGQDGIRSAQNFNEKI 236

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           G  G+I++K D  ++GG  + I     +P+ F+G GE + D + FV +   + + G  D 
Sbjct: 237 GIDGVILSKFDSDSKGGIALSIAYQIGVPLKFIGSGEKVADFDVFVPERIISRLMGAGDI 296

Query: 317 G 317
            
Sbjct: 297 A 297


>gi|15668466|ref|NP_247264.1| signal recognition particle, receptor [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2500888|sp|Q57739|Y291_METJA RecName: Full=Probable signal recognition particle protein MJ0291
 gi|1591013|gb|AAB98276.1| signal recognition particle, receptor [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 409

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 152/305 (49%), Gaps = 25/305 (8%)

Query: 25  SLKLKEGITDIISSRRLDDGVREELEDLLIRS-------DIGVAVAQKIVEELLTKRYAK 77
              L   I  ++    +   + E++ED+L          D+ + V +K++E +  +   +
Sbjct: 101 RFGLTRAIKKVLKKEVV--ILEEDIEDVLEELEIALLEADVALEVVEKLIENIKNELVGR 158

Query: 78  DVSVQRVLYD-----VSELIHKMLMPLSKPFNW-----DFSHRPHVILVVGVNGVGKTTV 127
            +S    + +     V   I  +L                  +P VI+ VG+NG GKTT 
Sbjct: 159 KISPDDNVEEITINAVKNAIKNILSQEKIDIEEIIKKNKAEGKPTVIVFVGINGTGKTTT 218

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL+ K+   G  V+LAAGDTFR+ AI+QL+  A       +  + G+D+AA+ Y+A +
Sbjct: 219 IAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNVGVKVIKHKPGADSAAVIYDAIQ 278

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +DV++ DTAGR   N  LM  I K++RV K      P  V+ V DA TG +A+ 
Sbjct: 279 HAKARGIDVVLADTAGRQATNVNLMEEIKKVVRVTK------PDLVIFVGDALTGNDAVY 332

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q E F+      G+I+TK+D  A+GG  + I      P+ +LGVG+   DL  F A    
Sbjct: 333 QAEEFNRAVNIDGIILTKVDADAKGGAALSIGYAIGKPILYLGVGQRYQDLIEFDADWMV 392

Query: 308 AVITG 312
             + G
Sbjct: 393 RKLFG 397


>gi|157165369|ref|YP_001466989.1| signal recognition particle protein [Campylobacter concisus 13826]
 gi|112800915|gb|EAT98259.1| signal recognition particle protein [Campylobacter concisus 13826]
          Length = 446

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 142/298 (47%), Gaps = 12/298 (4%)

Query: 26  LKLKEGITDIISSRR-LDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            ++ E     +S  R +DD        + L+  L+++D+   V + ++  + ++     V
Sbjct: 3   EQISESFRLAVSKIRFVDDEKALKNALDVLKKALLKADVHHKVTKDLLASIESELKQTGV 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             +  L  +   +  +L              P ++L+ G+ G GKTT   KL+  +    
Sbjct: 63  GQKNFLDAIKSNLTTILTAPGNQGFVYAPVAPTIVLMAGLQGSGKTTTTIKLANYLKLRK 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV++AA D  R AA++QL+        D    E  ++   +A EA ++A++   DVL++
Sbjct: 123 KKVLVAACDLQRLAAVEQLRQLCVANEIDLFYIENENNPIKVAKEALEKAKSGLYDVLLV 182

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL  +  LM  I  +   +       PH +  V DA +GQ+A++    F+ + G +
Sbjct: 183 DTAGRLAIDEKLMQEIKDVKNAIN------PHEIFYVADAMSGQDAVKTATSFNEILGIS 236

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           G+I++K D  ++GG  I I     IP+ F+G GE + D+E F+     + I G  D  
Sbjct: 237 GVILSKFDSDSKGGVAISIAKQLNIPLRFVGTGEKVADIESFIPDRIVSRIMGEGDLA 294


>gi|228986990|ref|ZP_04147116.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772768|gb|EEM21208.1| Cell division protein ftsY [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 260

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 101/247 (40%), Positives = 150/247 (60%), Gaps = 3/247 (1%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVN 120
            +++++L  +   +++   R +  V       +      F  +         V+L VGVN
Sbjct: 1   MELIDQLKEEVQRRNIQDPREVQAVISEKLIEIYKGDSDFTNEINMQKDGLTVVLFVGVN 60

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD AA
Sbjct: 61  GVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDPAA 120

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+DAT
Sbjct: 121 VMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVIDAT 180

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL+ 
Sbjct: 181 TGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDLQQ 240

Query: 301 FVAKDFS 307
           F  + + 
Sbjct: 241 FDPEQYV 247


>gi|304313969|ref|YP_003849116.1| signal recognition particle protein [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587428|gb|ADL57803.1| predicted signal recognition particle protein [Methanothermobacter
           marburgensis str. Marburg]
          Length = 359

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 98/297 (32%), Positives = 155/297 (52%), Gaps = 16/297 (5%)

Query: 25  SLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           S +   G       +++ +     V  ELE  L+ SD+ + VA++IVEEL  +   K V 
Sbjct: 68  SDEEGSGFLSFFREKKISEKDVEDVLWELEMALLESDVALEVAERIVEELREELVGKKVK 127

Query: 81  VQRVLYD-----VSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
               + D     + + +  +L +   K        +P VI+ VG+NG GKTT I K+++ 
Sbjct: 128 RSTEISDYTREALKKAVMDVLSVDGVKIRELAEKRKPLVIMFVGINGTGKTTTIAKVARY 187

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               GL+ ++AA DTFR+ AI+Q+   AD+     +    G+D AA+A++A   A+A+  
Sbjct: 188 FMKMGLEPVMAAADTFRAGAIEQIHEHADKLGVKIISHRKGADPAAVAFDAVSHAKAQGK 247

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV++IDTAGR+  N  LM  + K+ RV+K      P  +L V DA TG +A+ Q   F  
Sbjct: 248 DVVLIDTAGRMQTNVNLMDEMAKIKRVVK------PDLILFVGDALTGNDAIEQATKFDE 301

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             G   +I+TK D  ARGG  + I    + P+ FLG G+G +D+  F  +  +  + 
Sbjct: 302 AVGIDAVILTKADADARGGAALSIGYMIRKPIIFLGTGQGYDDIMEFRPEWMADQLF 358


>gi|167044181|gb|ABZ08863.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine crenarchaeote HF4000_APKG5E24]
          Length = 464

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 99/310 (31%), Positives = 156/310 (50%), Gaps = 20/310 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              KL   F+  +    E     ++ + +DD V  ELE  L+ SD+   V   I  +L T
Sbjct: 1   MFEKLGNAFSKAAKSFSEKD---LNEKDIDD-VLSELEISLLESDVATEVIDSIKSDLST 56

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMP----------LSKPFNWDFSHRPHVILVVGVNGV 122
           K     V+ + +   V + + + +            LS   +      P++IL VG+NG 
Sbjct: 57  KLVGSRVNKKEIEDFVKKSLTENISSMFDDAGSVDILSNIKSKTDPQDPYLILFVGINGT 116

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I K++  +    + V++AA DTFR+ AI+QL+   ++ +   +    GSD AA+A
Sbjct: 117 GKTTTIAKIANLLQKNKISVVVAAADTFRAGAIEQLREHINKLNLKLIAQNYGSDPAAVA 176

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A   A++ KVD ++ID+AGR+  N  LM  I K+ +V+       P   + V D+  G
Sbjct: 177 HDALLYAKSHKVDCVLIDSAGRMQTNKNLMEQIAKISKVVS------PDLKIFVGDSLAG 230

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            +A+ Q   FH      G I+TK D  ARGG  + IV   K PV ++G G+G +DLE F 
Sbjct: 231 NDAVSQAREFHKHTTFDGAILTKGDADARGGAALSIVAVTKKPVIYVGTGQGYDDLELFS 290

Query: 303 AKDFSAVITG 312
            + F   + G
Sbjct: 291 KEIFLETVFG 300


>gi|148261145|ref|YP_001235272.1| signal recognition particle protein [Acidiphilium cryptum JF-5]
 gi|146402826|gb|ABQ31353.1| signal recognition particle subunit FFH/SRP54 (srp54) [Acidiphilium
           cryptum JF-5]
          Length = 457

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 146/306 (47%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL +    +     L +  V E + D    L+ +D+ + V +  + ++  +   
Sbjct: 2   FDALSGKLGDVFDRLRRRGALSESDVIEAMRDIRLALLEADVALPVVRDFIAKVRLQAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V       Q+V+  V++ +   L      P N + +  P   L+VG+ G GKTT  GK
Sbjct: 62  AEVLRAVSPGQQVVKIVNDALVDALGGEGAVPLNLNAA-SPIPFLMVGLQGSGKTTTSGK 120

Query: 131 LSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++  +      KV+LA+ DT R AA  QL   A+R     +    G     +A  A +  
Sbjct: 121 IALLLKEKQRKKVLLASLDTQRPAAQLQLAQLAERAGVASLPIVPGETPVQIARRAMETG 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV+I+DTAGRL  +  LM  +  +       D  AP   L V+DA TGQ+AL   
Sbjct: 181 RREVFDVVILDTAGRLAIDQALMDEVKAI------RDVTAPAETLLVVDAMTGQDALATA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG++MT++DG ARGG  + +      P+  +G+GE ++ LEPF  +  +  
Sbjct: 235 TAFNEAVSITGIVMTRLDGDARGGAALSMRAVTGAPIKLMGMGEKLDALEPFHPERIAGR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGMGD 300


>gi|126465987|ref|YP_001041096.1| signal recognition particle-docking protein FtsY [Staphylothermus
           marinus F1]
 gi|126014810|gb|ABN70188.1| signal recognition particle-docking protein FtsY [Staphylothermus
           marinus F1]
          Length = 295

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 97/302 (32%), Positives = 164/302 (54%), Gaps = 13/302 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
             R++ + F+     + +    + S  +L D + +E +  LI +D+   VA++I  +L+ 
Sbjct: 1   MFRRIKRVFSKF---IDKASALLFSKEQLMD-LIDEFKFELISNDVAYDVAEEITTKLVE 56

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               K V  +  L + + + I      +     F+     +P++I+ +GVNGVGKTT I 
Sbjct: 57  AVENKIVRDKESLIEFLKKTIRSYFDSVELIDIFHEASKTKPYIIVFLGVNGVGKTTTIA 116

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K +    D G K ++ A DTFR+ A +QL+I  +RT       + G+D A++A++A + A
Sbjct: 117 KTAVLFRDKGFKPLMVAADTFRAGAQEQLRIHGERTGIPVFMGKYGADPASIAFDAIRHA 176

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV++IDTAGR+H +S L+  + K+IRV K      PH  + V+DA TG +A+ Q 
Sbjct: 177 ETRGYDVVLIDTAGRMHTDSNLVDELRKIIRVAK------PHRKILVVDALTGNDAIEQA 230

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F    G   +I+TK+D   +GG  + IV + + P+  +GVG+G  DL+PF   +F   
Sbjct: 231 VFFDKAVGVDAVIVTKVDAYEQGGVPLSIVYSIRKPIIMIGVGQGYKDLKPFNIDEFLDK 290

Query: 310 IT 311
           I 
Sbjct: 291 IL 292


>gi|118475105|ref|YP_891693.1| signal recognition particle-docking protein FtsY [Campylobacter
           fetus subsp. fetus 82-40]
 gi|261886461|ref|ZP_06010500.1| signal recognition particle-docking protein FtsY [Campylobacter
           fetus subsp. venerealis str. Azul-94]
 gi|118414331|gb|ABK82751.1| signal recognition particle-docking protein FtsY [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 289

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 158/299 (52%), Gaps = 27/299 (9%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV-----EELL 71
           L KG   T   +    ++    +++   + EEL   L+ +D+   + ++I+     ++++
Sbjct: 5   LKKGLEKT---INAVASNRPQDKKITKDILEEL---LLEADVPYEITEEIIYYLPPKDIV 58

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +K     V     LYD                N     +P + +++GVNG GKTT I KL
Sbjct: 59  SKDDLTRVMQTYFLYD----------------NKKIEAKPFIQMIIGVNGAGKTTTIAKL 102

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +     +G  V+L A DTFR+ A++Q+K+WA++     + S  G D AA+A++    A A
Sbjct: 103 ANLYKTSGKSVLLGASDTFRAGAVEQIKLWANKLDVPIIASSQGHDPAAVAFDTISSAVA 162

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K+ D  IIDTAGRL N   L + + K++R+  +    APH  + VLD T G   + Q + 
Sbjct: 163 KRYDYAIIDTAGRLQNQKNLASELEKIVRISNKAFEGAPHQKILVLDGTQGSAGVAQAKA 222

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           F+ +    G+I+TK+DGT++GG L  +    ++P+ ++GVGE + DL  F AK+F   I
Sbjct: 223 FNDIVKIDGVIITKLDGTSKGGALFGVARELELPILYIGVGERMEDLIKFDAKEFVDTI 281


>gi|41409087|ref|NP_961923.1| hypothetical protein MAP2989c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397446|gb|AAS05306.1| FtsY [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 444

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 111/306 (36%), Positives = 170/306 (55%), Gaps = 5/306 (1%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +   + +L    A +   L   +  +I    LD+   +++ED L+ +D+G  V + ++ +
Sbjct: 141 TEGRLERLRGRLARSQNALGRSLLGLIGGGDLDEDAWQDVEDTLLVADLGPVVTESVIAQ 200

Query: 70  LLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTT 126
           L  +  + DV  +     V    LI+++   L +       +  P V+L+VGVNG GKTT
Sbjct: 201 LRGRLASSDVRTEADAKAVLRDVLINELRPDLDRSIRALPHADHPSVLLIVGVNGTGKTT 260

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A+ V    G+D A++A++A 
Sbjct: 261 TVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWASRVGAEVVRGAEGADPASVAFDAV 320

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +  A   DV++IDTAGRLH    LM  + K+ RV+ R    A   VL VLDAT GQN L
Sbjct: 321 DKGIAAGADVVLIDTAGRLHTKVGLMDELDKVKRVVTRC--AAVDEVLLVLDATIGQNGL 378

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F  V   TG ++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    F
Sbjct: 379 AQARVFAEVVEITGAVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAAF 438

Query: 307 SAVITG 312
              + G
Sbjct: 439 VDALLG 444


>gi|32266439|ref|NP_860471.1| signal recognition particle protein [Helicobacter hepaticus ATCC
           51449]
 gi|32262490|gb|AAP77537.1| signal recognition particle protein [Helicobacter hepaticus ATCC
           51449]
          Length = 447

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 145/302 (48%), Gaps = 17/302 (5%)

Query: 26  LKLKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L      II+  R  D  +      +EL+  L+++D+     ++I++E+  +     +
Sbjct: 3   NTLTSSFKGIINKIRFSDDEKSLQRACDELKKTLLKNDVYHKAVKQIIQEVQQRTKEAGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
             Q  +  + + + K+L   SK +   FS   P VI+++G+ G GKTT   KL+      
Sbjct: 63  GKQNFINALQDALSKIL-QSSKSYGISFSPTPPSVIIMMGLQGSGKTTSSAKLALYFKQK 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC---SEIGSDAAALAYEAFKQAQAKKVD 195
           G KV+L A D  R AAI+QL   A     D      S   ++A  +A EA ++A     D
Sbjct: 122 GKKVLLVACDLHRLAAIEQLTQLAQSIEVDIFTPSHSSQPNNAVYVAKEAKQKAIEAHYD 181

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++IID+AGRL  + +LM+ + ++ R +           L V D+ +GQ+ +R  + F   
Sbjct: 182 IVIIDSAGRLAIDEVLMSELEEIKRAVSAS------ECLYVADSLSGQDGIRSAQHFDDK 235

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+I++K D   +GG  + I     IP+ F+G GE I D + F+     + + G  D
Sbjct: 236 IGIDGVILSKFDSDTKGGIALSIAYQIGIPLKFIGSGEKIADFDIFIPDRIISRLMGAGD 295

Query: 316 YG 317
             
Sbjct: 296 IA 297


>gi|326404546|ref|YP_004284628.1| signal recognition particle protein [Acidiphilium multivorum
           AIU301]
 gi|325051408|dbj|BAJ81746.1| signal recognition particle protein [Acidiphilium multivorum
           AIU301]
          Length = 462

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 146/306 (47%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL +    +     L +  V E + D    L+ +D+ + V +  + ++  +   
Sbjct: 7   FDALSGKLGDVFDRLRRRGALSESDVIEAMRDIRLALLEADVALPVVRDFIAKVRLQAVG 66

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V       Q+V+  V++ +   L      P N + +  P   L+VG+ G GKTT  GK
Sbjct: 67  AEVLRAVSPGQQVVKIVNDALVDALGGEGAVPLNLNAA-SPIPFLMVGLQGSGKTTTSGK 125

Query: 131 LSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++  +      KV+LA+ DT R AA  QL   A+R     +    G     +A  A +  
Sbjct: 126 IALLLKEKQRKKVLLASLDTQRPAAQLQLAQLAERAGVASLPIVPGETPVQIARRAMETG 185

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV+I+DTAGRL  +  LM  +  +       D  AP   L V+DA TGQ+AL   
Sbjct: 186 RREVFDVVILDTAGRLAIDQALMDEVKAI------RDVTAPAETLLVVDAMTGQDALATA 239

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+     TG++MT++DG ARGG  + +      P+  +G+GE ++ LEPF  +  +  
Sbjct: 240 TAFNEAVSITGIVMTRLDGDARGGAALSMRAVTGAPIKLMGMGEKLDALEPFHPERIAGR 299

Query: 310 ITGCLD 315
           I G  D
Sbjct: 300 ILGMGD 305


>gi|328861050|gb|EGG10154.1| hypothetical protein MELLADRAFT_115576 [Melampsora larici-populina
           98AG31]
          Length = 617

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 87/318 (27%), Positives = 140/318 (44%), Gaps = 29/318 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    K+     D+  +  +D    D + + L   L+ SD+ V +   +   + +K   
Sbjct: 3   LADLGKKINAAFADLQRTPLIDEKAVDSLLKGLATALLGSDVNVGLVSNLRNRVKSKVTP 62

Query: 77  K----DVSVQRVLYDVSELIHKMLMPLSKPFNW---------------DFSHRPHVILVV 117
           +      S  +    V + ++  L+ L  P                      +P+VI+ V
Sbjct: 63  QLEKLISSPAKQKQLVQKTVYDELVALVNPTAASSDATSSSSLALPWQPKKGKPNVIMFV 122

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G+ G GKTT   KL+      G +  L   DTFR+ A DQLK  A R    F  S   +D
Sbjct: 123 GLQGSGKTTSCTKLAVYYQRKGFRTALVCADTFRAGAFDQLKQNAARAKVPFFGSHTETD 182

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              ++     + + ++ +V+I+DT+GR    + L   + ++   ++      P+  + VL
Sbjct: 183 PIRISAAGVTKFKRERFEVIIVDTSGRHRQETELFEEMKQISSAVQ------PNLTIMVL 236

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D   GQ A  Q   F   AG   +I+TKMDG A+GGG I  V   + P+ F+G GE I+D
Sbjct: 237 DGAIGQAAEAQTRAFKEAAGFGAIIVTKMDGHAKGGGAISAVAATQTPIMFIGTGEHIHD 296

Query: 298 LEPFVAKDFSAVITGCLD 315
           LE F    F + + G  D
Sbjct: 297 LERFSPGPFISKVLGMAD 314


>gi|229140491|ref|ZP_04269046.1| Cell division protein ftsY [Bacillus cereus BDRD-ST26]
 gi|229197957|ref|ZP_04324672.1| Cell division protein ftsY [Bacillus cereus m1293]
 gi|228585536|gb|EEK43639.1| Cell division protein ftsY [Bacillus cereus m1293]
 gi|228643052|gb|EEK99328.1| Cell division protein ftsY [Bacillus cereus BDRD-ST26]
          Length = 260

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 152/247 (61%), Gaps = 3/247 (1%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVN 120
            +++++L  +   +++   + +  V       +      F  + + +     V+L VGVN
Sbjct: 1   MELIDQLKEEVQRRNIQDPKEVQAVISEKLIEIYKGDSDFTNEINEQKDGLTVVLFVGVN 60

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT IGK++ K    G  V+LAAGDTFR+ AI+QL++W DR   + +    GSD AA
Sbjct: 61  GVGKTTTIGKMAHKFKSEGKSVLLAAGDTFRAGAIEQLEVWGDRVGVEVIKQGSGSDPAA 120

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + Y+A + A+A+KVDVL+ DTAGRL N   LM  + K+ RV++R  P APH VL V+DAT
Sbjct: 121 VMYDAVQAAKARKVDVLLCDTAGRLQNKVNLMKELEKVKRVIEREVPGAPHEVLLVIDAT 180

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN L Q + F      TG+++TK+DGTA+GG ++ I     +PV F+G+GE ++DL+ 
Sbjct: 181 TGQNGLSQAKTFREATNVTGIVLTKLDGTAKGGIVLAIRNEMDVPVKFVGLGEQMDDLQQ 240

Query: 301 FVAKDFS 307
           F  + + 
Sbjct: 241 FDPEQYV 247


>gi|315104270|gb|EFT76246.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL050PA2]
          Length = 396

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 112/293 (38%), Positives = 178/293 (60%), Gaps = 5/293 (1%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           +++  L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S  
Sbjct: 100 NSNNALARGLAELLSADKLDDDAWDDFETTLITSDLGVGRTTELVEKLRSELAIDGISDS 159

Query: 83  RVLYDV--SELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
               +V   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G
Sbjct: 160 AHAREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEG 219

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +      VDV+++
Sbjct: 220 KTVLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLV 279

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH  + LM  +GK+ RV+++  P +   VL VLDATTGQN L Q  +F  V   T
Sbjct: 280 DTAGRLHTKAGLMDELGKVKRVIEKFAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVT 337

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G++++K+DG+A+GG ++ +     +PV  +G+GEG +DL PF A +F   + G
Sbjct: 338 GIVLSKLDGSAKGGIVVQVQRELGVPVKLIGLGEGADDLAPFDADNFVTGLMG 390


>gi|229527114|ref|ZP_04416508.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           12129(1)]
 gi|229335345|gb|EEO00828.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           12129(1)]
          Length = 344

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 103/258 (39%), Positives = 162/258 (62%), Gaps = 1/258 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 86  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 145

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  K   + +     LY  + E + ++L  + KP   D   +P+VIL+VGVNGVG
Sbjct: 146 KIIANLTAKASRQQLRDGEALYGLLKEEMAEILSQVEKPLVIDTEKKPYVILMVGVNGVG 205

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+K+    G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ Y
Sbjct: 206 KTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVPVIAQHTGADSASVIY 265

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+A+ +DV+I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQ
Sbjct: 266 DAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQ 325

Query: 244 NALRQVEMFHAVAGTTGL 261
           NA+ Q ++F  VA  TG+
Sbjct: 326 NAISQAKLFSDVAPITGI 343


>gi|290957110|ref|YP_003488292.1| signal recognition particle receptor [Streptomyces scabiei 87.22]
 gi|260646636|emb|CBG69733.1| putative signal recognition particle receptor [Streptomyces scabiei
           87.22]
          Length = 399

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 177/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++ + +   + +L    + +   L +G+  ++S   LDD   EE+ED L+ +D+GV   Q
Sbjct: 90  EIPAPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVQPTQ 149

Query: 65  KIVEELLTKRY--AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
           ++VE L  +          +       EL+  ++    +  N D     P +++VVGVNG
Sbjct: 150 ELVERLRERVRVLGTRTPAELRTLLREELLTILVPEFDRAVNTDSPLDTPGIVMVVGVNG 209

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 210 TGKTTTTGKLARVLVADGKNVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 269

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+   +  DV++IDTAGRLH  + LM  +GK+ RV+++  P     +L VLDATT
Sbjct: 270 AFDAVKEGIEEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAP--LDEILLVLDATT 327

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 328 GQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPF 387

Query: 302 VAKDFSAVITG 312
             + F   + G
Sbjct: 388 EPEAFVDALIG 398


>gi|12230633|sp|P70722|SRP54_ACIAM RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|4165432|emb|CAA69991.1| fifty-four homologue of SRP54 [Acidianus ambivalens]
          Length = 451

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 140/302 (46%), Gaps = 14/302 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
             +    +++ +T   S  +  +   +EL+  LI +D+ V +   +  ++  +   +   
Sbjct: 4   LDNLRDAVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPP 63

Query: 81  V-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 +  +  V + +  +     +P        P+VI++VGV G GKTT  GKL+   
Sbjct: 64  TYIERREWFIKIVYDELSNLFGGDKEPKVIP-DKIPYVIMLVGVQGTGKTTTAGKLAYFY 122

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV L   D +R AA++QL+    +            DA  +A    ++  ++K++
Sbjct: 123 KKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDAVGIAKRGVEKFLSEKME 182

Query: 196 VLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           ++I+DTAGR      + L+  +  +   +K      P  V  V+DA+ GQ A      F+
Sbjct: 183 IIIVDTAGRHGYGEEAALLEEMKNIYEAIK------PDEVTLVIDASIGQKAYDLASKFN 236

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
             +    +I+TKMDGTA+GGG +  V      + F+G GE I++LE F  + F A I G 
Sbjct: 237 QASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARILGM 296

Query: 314 LD 315
            D
Sbjct: 297 GD 298


>gi|302832455|ref|XP_002947792.1| hypothetical protein VOLCADRAFT_79814 [Volvox carteri f.
           nagariensis]
 gi|300267140|gb|EFJ51325.1| hypothetical protein VOLCADRAFT_79814 [Volvox carteri f.
           nagariensis]
          Length = 384

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 102/327 (31%), Positives = 144/327 (44%), Gaps = 36/327 (11%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLL------------ 53
           +  ++     +  KG + T  +L               G+ +EL  L             
Sbjct: 64  IKEKAAGDFDRFFKGTSKTRERL---------------GLVDELLALWSLEDYEESLEEL 108

Query: 54  ----IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFN 104
               I +D G   A KIV+ +     +  V             + EL+        +   
Sbjct: 109 EEVLISADFGPRTALKIVDRIRDGVKSGTVKSADDTRAALKSAIVELLTSRGAAGGRTSE 168

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
                RP  +L+VGVNG GKTT +GKL+ K    G KV L  GDTFR+AA +QL  W  R
Sbjct: 169 LRLQGRPAAVLIVGVNGAGKTTTVGKLAYKYGKEGAKVFLIPGDTFRAAAAEQLAEWGRR 228

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
             A       G+   A+      +  A   D++++DTAGRLH    LM  +      +  
Sbjct: 229 AGATLGTFREGARPQAVIASRACKDPADVYDLVLVDTAGRLHTAYKLMEELQLCKSAVGT 288

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L VLD TTG N L Q   F+     TGLI+TK+DGTARGG ++ +V    +
Sbjct: 289 ALTGQPDETLLVLDGTTGLNMLNQAREFNDAVKLTGLILTKLDGTARGGAVVSVVDQLGL 348

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVIT 311
           PV F+GVGE   DL+PF A+ F+  + 
Sbjct: 349 PVKFIGVGETAEDLQPFDAEAFAEALF 375


>gi|11094805|gb|AAG29734.1|AC084414_2 signal recognition particle 54 kDa protein 2 (SRP54), putative
           [Arabidopsis thaliana]
          Length = 522

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 137/332 (41%), Gaps = 43/332 (12%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    ++   I  + +   +D+        E+   L++SD+   + +++   +      
Sbjct: 3   LAELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +D++       + E      + KML P  KP       +  V++ VG+ G GKTT   K 
Sbjct: 63  EDLAAGHNKRRIIEQAIFSELCKMLDP-GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-------------------- 171
           +      G K  L   DTFR+ A DQLK  A +    F                      
Sbjct: 122 AYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGRFGLGQYLHISGLKRTSVTY 181

Query: 172 -------SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                      SD   +A E     + +  D++I+DT+GR    + L   + ++    K 
Sbjct: 182 MFLCPIIHYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATK- 240

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P  V+ V+D++ GQ A  Q + F        +I+TKMDG A+GGG +  V   K 
Sbjct: 241 -----PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKS 295

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           PV F+G GE +++ E F  K F + + G  D+
Sbjct: 296 PVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 327


>gi|221059453|ref|XP_002260372.1| signal recognition particle [Plasmodium knowlesi strain H]
 gi|193810445|emb|CAQ41639.1| signal recognition particle, putative [Plasmodium knowlesi strain
           H]
          Length = 500

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 136/305 (44%), Gaps = 14/305 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE-LED---LLIRSDIGVAVAQKIVEELLTKRYA 76
                 +L   +  + +S   DD   EE L++    LI +DI ++  + I   +  K   
Sbjct: 3   LTELGTQLTSALQKLQASAVADDSAIEECLKEVIRALILADINISYLKDIKSNIKKKIEK 62

Query: 77  K-DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLS 132
             D+        V + + + L+ L +     +  +    +VIL VG+ G GKTT   K +
Sbjct: 63  NIDLYGNNKKRLVQQYVVEELINLLEGKKESYVPKKGSRNVILFVGLQGSGKTTTCTKFA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G K  L   DTFR+ A DQLK  A +    F  S    D   +A +       +
Sbjct: 123 HYYQKKGFKTALVCADTFRAGAFDQLKQNAAKVKIPFYGSYSEVDPVKIASDGVNAFLKE 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D++I+D++GR    S L   + ++   +       P  ++ V+D+  GQ+   Q   F
Sbjct: 183 KYDLIIVDSSGRHKQESELFEEMKQVESSIN------PEEIVFVIDSHIGQSCHDQAMAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                   +I+TK+DG A+GGG +  V +   P+ F+G GE IND E F AK F + + G
Sbjct: 237 KNSVTLGSIIITKIDGHAKGGGALSAVASTGCPITFIGTGEHINDFEKFEAKSFVSRLLG 296

Query: 313 CLDYG 317
             D  
Sbjct: 297 LGDIN 301


>gi|171912808|ref|ZP_02928278.1| signal recognition particle-docking protein FtsY [Verrucomicrobium
           spinosum DSM 4136]
          Length = 281

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 105/284 (36%), Positives = 161/284 (56%), Gaps = 6/284 (2%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
             + +    +   +D    ++LE  LI  D+G  ++ +IV++L  +   + +  Q ++  
Sbjct: 4   FFKKLIQRFTKADID---WDDLEAQLIAGDLGAKLSMQIVDDLKDQA--RKLHDQDIVEV 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             + I ++L     P    F  +P V+L+VGVNG GKTT   KL+  +   G  ++LAA 
Sbjct: 59  TKKHIRRILPETVAPVK-PFGDKPKVLLIVGVNGTGKTTSTAKLANLLKKQGHSLVLAAA 117

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QL++WA R     +      D +A+ ++A+  A A+K D LI DTAGRLH 
Sbjct: 118 DTFRAAAVEQLEVWAKRVDVPIIKGPPNGDPSAVCFDAYSSAIARKADFLICDTAGRLHT 177

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
              LM  + K+ R L + DP APH VL V+DATTG NAL+Q + F+     TG+I+TK+D
Sbjct: 178 RHNLMEELRKVQRTLGKKDPTAPHEVLLVVDATTGGNALQQAKEFNKTVPLTGVIVTKLD 237

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G+ +GG L+ I     IP  F+G GE + D E FV + F   + 
Sbjct: 238 GSGKGGVLVAIQQELGIPARFVGTGEHMEDFEAFVPETFLDQML 281


>gi|307596389|ref|YP_003902706.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Vulcanisaeta distributa DSM 14429]
 gi|307551590|gb|ADN51655.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Vulcanisaeta distributa DSM 14429]
          Length = 446

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 92/302 (30%), Positives = 148/302 (49%), Gaps = 20/302 (6%)

Query: 28  LKEGITDIISSRR----LDD----GVREELEDLLIRSDIGVAVAQKIV----EELLTKRY 75
           L E  T++++  R    +D+     V  E++ +L+R+D+   V   I     E    ++ 
Sbjct: 6   LIEAFTNLVNRIRGLSYIDEATLKEVLREIQRILLRADVSADVVLSITKTIEERFRQEKP 65

Query: 76  AKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            + ++ +  L Y + + + K L     P N + S RP+ ++++GV G GKTT   KL++ 
Sbjct: 66  PQGITSKEFLLYLLYQELVKALGGEEAP-NVNVSKRPYKLMLIGVEGSGKTTSAAKLARF 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
                L+V L   DT+R  A  QLK  A+R +A F   E   D  A+     +  Q  +V
Sbjct: 125 YIKRNLRVGLIETDTYRPGAYHQLKQLAERVNALFYGEENSKDPIAILRHGLEYMQRNRV 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++IIDTAGR  N   L+     +       D   P  V+ V+DAT G+ A  Q E F  
Sbjct: 185 DLIIIDTAGRHRNEEELLKEAKAIY------DEAKPDEVMLVIDATVGRQAAAQTEAFMK 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
                 + +TKMD TA+ GG +  V+     + F+GVGE I+++E F A  + + + G  
Sbjct: 239 YVPIHSVFLTKMDSTAKAGGALTSVIRSGARIKFIGVGEDIDEIEVFDANKYVSRLLGMG 298

Query: 315 DY 316
           D 
Sbjct: 299 DL 300


>gi|171920811|ref|ZP_02695409.2| signal recognition particle protein [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|171903576|gb|EDT49865.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
          Length = 448

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 137/297 (46%), Gaps = 15/297 (5%)

Query: 25  SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
           S ++ + + +   +      +  E+   L+ +D+ + V +K ++ +  K     V   + 
Sbjct: 11  SKQMSKKLKNATIAEEDIKELLSEIRIALLDADVNLLVVKKFIKNIKEKTIGLYVEQNQK 70

Query: 85  -----LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA- 138
                L  + + + ++L   +KP N   S     I++VG+ G GKTT  GKL+    +  
Sbjct: 71  PADVVLKVIKDELVEILGKENKPVNTAKSQ--LKIMMVGLQGSGKTTTAGKLANYFRNKY 128

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             K +L A D +R AAIDQL+  A +   DF   E           A  +A   + +++I
Sbjct: 129 NKKPLLVAADIYRPAAIDQLRTLAKQVRVDFW-EEGTQRPDLTVKNALHKADENENNLVI 187

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL  N  LM  +  + + L       P  V  V+DA  GQ+ +     F+     
Sbjct: 188 VDTAGRLQTNEELMQELVNVKKTLN------PDEVFLVVDAMAGQDIINVATEFNNWLKL 241

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG+I+TK+D  AR G ++ +     +P+ F G GE I  ++ F  +  +  I G  D
Sbjct: 242 TGIIVTKLDSDARAGAVLSLTSLLNVPIKFTGTGEKIGSIDSFYPERMADRILGLGD 298


>gi|302554416|ref|ZP_07306758.1| signal recognition particle-docking protein FtsY [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472034|gb|EFL35127.1| signal recognition particle-docking protein FtsY [Streptomyces
           viridochromogenes DSM 40736]
          Length = 411

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 176/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q
Sbjct: 102 EIPEPTEGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQ 161

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNG 121
           ++VE L  +           L  +   EL+  +   + +    +   R P +++VVGVNG
Sbjct: 162 ELVERLRERVKVLGTRTPEELRTLLREELVTLVGRDMDRTVKTEPEGRGPGIVMVVGVNG 221

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V      D A++
Sbjct: 222 TGKTTTTGKLARVLVADGQSVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEAGDPASV 281

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+ +    +V++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 282 AFDAVKEGKETGANVVLIDTAGRLHTKTGLMDELGKVKRVVEKQAP--VDEVLLVLDATT 339

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF
Sbjct: 340 GQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGADDLAPF 399

Query: 302 VAKDFSAVITG 312
             + F   + G
Sbjct: 400 EPEAFVDALIG 410


>gi|185178783|ref|ZP_02964582.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           5 str. ATCC 27817]
 gi|188518703|ref|ZP_03004129.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|188524136|ref|ZP_03004209.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195867445|ref|ZP_03079449.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
 gi|198273576|ref|ZP_03206112.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|225550943|ref|ZP_03771892.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
 gi|225551584|ref|ZP_03772530.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|184209401|gb|EDU06444.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           5 str. ATCC 27817]
 gi|188997693|gb|EDU66790.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|195659739|gb|EDX53119.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195660921|gb|EDX54174.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           9 str. ATCC 33175]
 gi|198250096|gb|EDY74876.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           4 str. ATCC 27816]
 gi|225379399|gb|EEH01764.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           8 str. ATCC 27618]
 gi|225380097|gb|EEH02459.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           2 str. ATCC 27814]
          Length = 448

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 137/297 (46%), Gaps = 15/297 (5%)

Query: 25  SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
           S ++ + + +   +      +  E+   L+ +D+ + V +K ++ +  K     V   + 
Sbjct: 11  SKQMSKKLKNATIAEEDIKELLSEIRIALLDADVNLLVVKKFIKNIKEKTIGLYVEQNQK 70

Query: 85  -----LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA- 138
                L  + + + ++L   +KP N   S     I++VG+ G GKTT  GKL+    +  
Sbjct: 71  PADVVLKVIKDELVEILGKENKPVNTAKSQ--LKIMMVGLQGSGKTTTAGKLANYFRNKY 128

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             K +L A D +R AAIDQL+  A +   DF   E           A  +A   + +++I
Sbjct: 129 NKKPLLVAADIYRPAAIDQLRTLAKQVRVDFW-EEGTQRPDLTVKNALHKADENENNLVI 187

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL  N  LM  +  + + L       P  V  V+DA  GQ+ +     F+     
Sbjct: 188 VDTAGRLQTNEELMQELVNVKKTLN------PDEVFLVVDAMAGQDIINVATEFNNWLKL 241

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG+I+TK+D  AR G ++ +     +P+ F G GE I  ++ F  +  +  I G  D
Sbjct: 242 TGIIVTKLDSDARAGAVLSLTSLLNVPIKFTGTGEKIGSIDSFYPERMADRILGLGD 298


>gi|188024387|ref|ZP_02997051.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           7 str. ATCC 27819]
 gi|188018655|gb|EDU56695.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           7 str. ATCC 27819]
          Length = 448

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 137/297 (46%), Gaps = 15/297 (5%)

Query: 25  SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
           S ++ + + +   +      +  E+   L+ +D+ + V +K ++ +  K     V   + 
Sbjct: 11  SKQMSKKLKNATIAEEDIKELLSEIRIALLDADVNLLVVKKFIKNIKEKTIGLYVEQNQK 70

Query: 85  -----LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA- 138
                L  + + + ++L   +KP N   S     I++VG+ G GKTT  GKL+    +  
Sbjct: 71  PADVVLKVIKDELVEILGKENKPVNTAKSQ--LKIMMVGLQGSGKTTTAGKLANYFRNKY 128

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             K +L A D +R AAIDQL+  A +   DF   E           A  +A   + +++I
Sbjct: 129 NKKPLLVAADIYRPAAIDQLRTLAKQVRVDFW-EEGAQRPDLTVKNALHKADENENNLVI 187

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL  N  LM  +  + + L       P  V  V+DA  GQ+ +     F+     
Sbjct: 188 VDTAGRLQTNEELMQELVNVKKTLN------PDEVFLVVDAMAGQDIINVATEFNNWLKL 241

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG+I+TK+D  AR G ++ +     +P+ F G GE I  ++ F  +  +  I G  D
Sbjct: 242 TGIIVTKLDSDARAGAVLSLTSLLNVPIKFTGTGEKIGSIDSFYPERMADRILGLGD 298


>gi|284161352|ref|YP_003399975.1| signal recognition particle-docking protein FtsY [Archaeoglobus
           profundus DSM 5631]
 gi|284011349|gb|ADB57302.1| signal recognition particle-docking protein FtsY [Archaeoglobus
           profundus DSM 5631]
          Length = 367

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 92/290 (31%), Positives = 155/290 (53%), Gaps = 16/290 (5%)

Query: 33  TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSEL 91
            +++   +  + + E+LE +L+ SD+ + V ++I  +L  +   +   +   + D V   
Sbjct: 82  REVVIDEKSVEEILEDLEIILLESDVALEVVEEISRQLKDRLVGRRRKIGEKISDIVINE 141

Query: 92  IHKMLMPLSKPFNWDFS---------HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           +  +++ +     +DF           RP  I+ VGVNG GKTT I K++K++ D G  V
Sbjct: 142 LKLIILDILDRNRFDFDEFVESKLKEKRPLNIVFVGVNGTGKTTTIAKVAKRLIDFGYSV 201

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +LAAGDTFR+ AI+QL+    R     +  + G+D  A+ Y+A K A++K +D+++ DTA
Sbjct: 202 VLAAGDTFRAGAIEQLEEHGKRLGVKVIKHKQGADPCAVIYDALKHAESKGIDIVLADTA 261

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GR+H    L+  + K+ RV K      P  V+ V ++  G +A+ +  MF+   G  G I
Sbjct: 262 GRMHTKKNLIDQLAKIKRVTK------PDLVIFVDESIAGNDAVERARMFNEAVGIDGTI 315

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +TK+D   +GG  I I      P+ FLG G+G +DL  F ++     I G
Sbjct: 316 LTKIDADPKGGTAISISYVTGKPILFLGTGQGYDDLVKFDSRWLVERIFG 365


>gi|330834334|ref|YP_004409062.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Metallosphaera cuprina Ar-4]
 gi|329566473|gb|AEB94578.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Metallosphaera cuprina Ar-4]
          Length = 446

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 142/301 (47%), Gaps = 10/301 (3%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
                  +K+ +T   S     +   +EL+  LI SD+ V +   +  ++  +   +   
Sbjct: 2   LDGIRDAVKKFLTGNASYDVAVEEFIKELQKSLISSDVQVKLVLSLTNKIKERLKKETPP 61

Query: 81  V-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 +  +  V + +  +     +P   +    P VI++VGV G GKTT  GKL+   
Sbjct: 62  SNLERREWFIKVVYDELSALFGGDKEP-EVNPKSNPWVIMLVGVQGTGKTTTAGKLAYFY 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV L   D +R AA++QL+    + +         SDA  ++     +  +++ +
Sbjct: 121 KRRGYKVALVGADVYRPAALEQLRQIGKQINVPVYGEPDSSDAVGISERGVAKFLSERYE 180

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++IIDTAGR          + +M  + +++ P+    V+ V+DA+ GQ A    + FH  
Sbjct: 181 LIIIDTAGRHGYGEE-SKLLDEMKEIYEKVKPN---EVVLVIDASLGQKAFDLAKKFHEA 236

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +    +I+TKMDGTA+GGG +  V      + F+G+GE I++LE F  + F A I G  D
Sbjct: 237 SNVGSIIITKMDGTAKGGGALSAVAATGARIKFIGLGEKIDELEVFNPRRFVARILGMGD 296

Query: 316 Y 316
            
Sbjct: 297 L 297


>gi|254573270|ref|XP_002493744.1| Signal recognition particle (SRP) subunit (homolog of mammalian
           SRP54) [Pichia pastoris GS115]
 gi|238033543|emb|CAY71565.1| Signal recognition particle (SRP) subunit (homolog of mammalian
           SRP54) [Pichia pastoris GS115]
 gi|328354432|emb|CCA40829.1| Signal recognition particle subunit SRP54 [Pichia pastoris CBS
           7435]
          Length = 518

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 146/303 (48%), Gaps = 14/303 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    ++   + ++  S  +D  V     +E+ + L+ SD+ + +  ++ E++  +  A
Sbjct: 3   LADLGRRINNAVGNVTKSNVVDADVISNMLKEICNALLESDVNIKLVAQLREKIRKQIDA 62

Query: 77  KDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +D         + +++   L+ L              + +VI++VG+ G GKTT   KL+
Sbjct: 63  EDKPGINKKKLIQKVVFDELVKLVDCNEAELFKPKKKQTNVIMMVGLQGAGKTTTCTKLA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G KV +  GDTFR+ A DQLK  A +    +  S   +D   + ++  ++ + +
Sbjct: 123 VYYQRRGFKVGMVCGDTFRAGAFDQLKQNATKAKIPYYGSYTETDPVKVTFDGVEEFRKE 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K +++I+DT+GR      L   + ++ + +K      P+  + VLDA+ GQ+A  Q + F
Sbjct: 183 KFEIIIVDTSGRHRQEEDLFEEMVQIGKAIK------PNQTIMVLDASIGQSAESQSKAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
              +    +I+TKMD  ++GGG +  +     PV F+  GE I + E F  + F + + G
Sbjct: 237 KESSDFGAIIITKMDSNSKGGGALSAIAATNTPVAFIATGEHIQNFEKFSGRGFISKLLG 296

Query: 313 CLD 315
             D
Sbjct: 297 IGD 299


>gi|300709660|ref|YP_003735474.1| signal recognition 54 kDa protein [Halalkalicoccus jeotgali B3]
 gi|299123343|gb|ADJ13682.1| signal recognition 54 kDa protein [Halalkalicoccus jeotgali B3]
          Length = 462

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 135/301 (44%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L+  + ++    RL +     V +E++  L+++D+ V++  ++ + + T+   
Sbjct: 3   LDDLGTSLRGTLEELRGKSRLTEEDVQAVVKEIQRSLLQADVDVSLVMELSDSIKTRALE 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++        D V  ++++ L+ L      +       I++ G+ G GKTT   K++   
Sbjct: 63  EEPPGGTTARDHVLRIVYEELVALVGDST-ELPLEEQTIMLAGLQGSGKTTTAAKMAWWF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  GL+  +   DTFR  A DQ K   +R   +F       D   +A    ++      D
Sbjct: 122 SKKGLRPAVIQTDTFRPGAYDQAKQMCERAEVEFYGDPDAEDPVEIARRGMEETAD--AD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I+DTAGR      L+  I  +   ++      P   L VLDA  GQ A  Q   F   
Sbjct: 180 VHIVDTAGRHALEDELIKEIEAIGEAVE------PDRSLLVLDAAIGQGAKEQARRFEES 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+ +TK+DGTA+GGG +  V      + FLG GE ++D+E F    F + + G  D
Sbjct: 234 IGIQGVAITKLDGTAKGGGALTAVNETDSTIAFLGTGEEVDDIERFEPNGFISRLLGMGD 293

Query: 316 Y 316
            
Sbjct: 294 L 294


>gi|256809975|ref|YP_003127344.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus fervens AG86]
 gi|256793175|gb|ACV23844.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus fervens AG86]
          Length = 397

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 99/305 (32%), Positives = 155/305 (50%), Gaps = 25/305 (8%)

Query: 25  SLKLKEGITDIISSRRLDDGVREELEDLLIR-------SDIGVAVAQKIVEELLTKRYAK 77
              L   I  +I    +   + E++ED+L         +D+ + V +K++E +  +   K
Sbjct: 89  RFGLTRAIKKVIKKEVV--ILEEDIEDVLEELEIELLEADVALEVVEKLIENIKNELVGK 146

Query: 78  DVSVQRVLYD-----VSELIHKMLMPLSKPFNW-----DFSHRPHVILVVGVNGVGKTTV 127
            +S    + +     V   I  +L                  +P VI+ VG+NG GKTT 
Sbjct: 147 KISPDDDVEEITINAVKNAIKNILSQEKIDIEEIIKKNKAQGKPTVIVFVGINGTGKTTT 206

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL+ K+   G  V+LAAGDTFR+ AI+QL+  A       +  + G+D+AA+ Y+A +
Sbjct: 207 IAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNIGVKVIKHKQGADSAAVIYDAIQ 266

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+A+ +DV++ DTAGR   N+ LM  I K++RV K      P  V+ V DA TG +A+ 
Sbjct: 267 HAKARGIDVVLADTAGRQATNTNLMEEIKKVVRVTK------PDLVIFVGDALTGNDAVY 320

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q E F+      G+I+TK+D  A+GG  + I      P+ +LGVG+  +DL  F A    
Sbjct: 321 QAEEFNKAVDIDGIILTKVDADAKGGAALSIGYAIGKPILYLGVGQRYSDLIEFDADWMV 380

Query: 308 AVITG 312
             + G
Sbjct: 381 KKLFG 385


>gi|224419058|ref|ZP_03657064.1| signal recognition particle protein [Helicobacter canadensis MIT
           98-5491]
 gi|253827998|ref|ZP_04870883.1| cell division protein ftsY [Helicobacter canadensis MIT 98-5491]
 gi|313142566|ref|ZP_07804759.1| signal recognition particle protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511404|gb|EES90063.1| cell division protein ftsY [Helicobacter canadensis MIT 98-5491]
 gi|313131597|gb|EFR49214.1| signal recognition particle protein [Helicobacter canadensis MIT
           98-5491]
          Length = 295

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 163/302 (53%), Gaps = 16/302 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L +    T+  +KE +    + ++L    +EELE++LI +D+   + + I+  L  
Sbjct: 1   MFDILKRTLQKTTQSIKEILPK--AHKKL---TKEELEEVLIATDMDYDLIELILSPLGD 55

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           +    ++ V         L+          K        +P V L+VGVNG GKTT I K
Sbjct: 56  EISKNELEVA--------LLRLFRGESYYDKVQAKQVEAKPCVDLIVGVNGAGKTTTIAK 107

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ +    G  V+L AGDTFR+AAI+QL +W +R     + S+ G D +A+A++    A 
Sbjct: 108 LANRYKKQGKSVILGAGDTFRAAAIEQLTLWGNRLGIPVIASKQGHDPSAVAFDTITSAV 167

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK +D +IIDTAGRLHN S L   + K++R+  +    APH  + +LD T G ++L Q +
Sbjct: 168 AKGIDCVIIDTAGRLHNQSNLQNELQKILRICNKAKEGAPHRKILILDGTQGTSSLDQAK 227

Query: 251 MFHAVA-GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           +F     G  G+I+TK+DGT++GG +  I+ T ++P+ ++GVGEG  DL  F    +   
Sbjct: 228 VFSQTLGGIDGVIITKLDGTSKGGAIFSIIYTLRVPILYIGVGEGAEDLVEFDESKYIQT 287

Query: 310 IT 311
           I 
Sbjct: 288 IL 289


>gi|223939371|ref|ZP_03631250.1| signal recognition particle-docking protein FtsY [bacterium
           Ellin514]
 gi|223891975|gb|EEF58457.1| signal recognition particle-docking protein FtsY [bacterium
           Ellin514]
          Length = 255

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 93/252 (36%), Positives = 142/252 (56%), Gaps = 1/252 (0%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + + ++I+E +      +      V    S  + K L  +             V+ +VGV
Sbjct: 1   MDMTEQIIEAVKKAYETQGREGLDVFNIASAEVEKSLSTMDYVLK-RADGALTVVSIVGV 59

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT   K++  +   G   +LAA DTFR+AAI+QLK+W +R     +     +D A
Sbjct: 60  NGTGKTTTAAKMAHMIQQQGKISVLAACDTFRAAAIEQLKLWGERLKVPVIAGADKADPA 119

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A++A   + A++ D LI+DTAGRLH    LM  + K+ RV+ +    APH VL VLDA
Sbjct: 120 AIAHDAITASLARRADYLIVDTAGRLHTKHNLMQELQKLHRVMGKQLAGAPHEVLLVLDA 179

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTG NAL Q   FH     TGL++TK+DGT++GG ++ I     +P+ F+G+GE  +DL+
Sbjct: 180 TTGMNALNQAREFHKAVPLTGLVVTKLDGTSKGGMVVAIQKELGLPIKFVGLGEQPDDLQ 239

Query: 300 PFVAKDFSAVIT 311
           PF A+ ++  + 
Sbjct: 240 PFDARQYAQALF 251


>gi|153951547|ref|YP_001397701.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152938993|gb|ABS43734.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 288

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 156/299 (52%), Gaps = 16/299 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
                 KG A T   +     +   ++++   + EE+   L+ +D+   + ++I+  L  
Sbjct: 1   MFNFFKKGLAKTLENIVGVKGE---NKKITKDLLEEI---LLEADVSYEIVEEIIYYLPP 54

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +   K         D+  ++    +   K  N +   +P V L++GVNG GKTT I KL+
Sbjct: 55  QNEVKK-------EDLKRVMGSYFLYEKKETNQE---KPFVELILGVNGAGKTTSIAKLA 104

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
               +   KV+L A DTFR+ AI+QLK+WA +   D V +  G D +A+A++   +A+AK
Sbjct: 105 YLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISKAKAK 164

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D +IIDTAGRL N   L   + K++R+  +    APH  + VLD T G   + Q + F
Sbjct: 165 DFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAF 224

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +    G+I+TK+DGTA+GG L  I    ++P++++GVGE   DL  F    F   I 
Sbjct: 225 NELVKLDGVIITKLDGTAKGGVLFSIARELELPIFYVGVGESKEDLIEFNINAFLDTIL 283


>gi|88191946|pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
           Group P21212
 gi|88191947|pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
           Group H32
 gi|88191948|pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
           Group H32
          Length = 320

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 184/312 (58%), Gaps = 10/312 (3%)

Query: 17  LTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           + K    ++    + I  +    ++ DD   EELED+LI++D+G+ +  K V  L+ K+ 
Sbjct: 7   MEKAMLKSAFNFSKDIKKLSKKYKQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKT 65

Query: 76  AKDVSVQRVLYDVSELIHKMLMP---LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKL 131
            +D S + +   + E +++        +K +  DF  +R ++ ++VGVNG GKTT + K+
Sbjct: 66  KRDTSFENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKM 125

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFK 187
           +   ++ G KV++AA DTFR+ A  QL+ W         D V  +++ +D A++ ++A K
Sbjct: 126 ANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIK 185

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+ +  D+L+IDTAGRL N + LMA + KM +++++++  APH VL V+DATTGQN + 
Sbjct: 186 KAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVI 245

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q E F  VA  +G+I+TKMD T++GG  + I     IP+  +GVGE ++DL  F    + 
Sbjct: 246 QAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYI 305

Query: 308 AVITGCLDYGEE 319
             ++     G+E
Sbjct: 306 VHLSSGFMQGDE 317


>gi|152965360|ref|YP_001361144.1| signal recognition particle-docking protein FtsY [Kineococcus
           radiotolerans SRS30216]
 gi|151359877|gb|ABS02880.1| signal recognition particle-docking protein FtsY [Kineococcus
           radiotolerans SRS30216]
          Length = 391

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 182/311 (58%), Gaps = 6/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  + +L  + +L +  + ++  L +G+  ++S   LD+   EE+E+ L+ +D+G     
Sbjct: 82  ERPAPALGRLVRLRERLSRSNSALGQGLLALLSRDTLDEATWEEVEETLLLADVGFGPTT 141

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPF-NWDFSHRPHVILVVGVNG 121
           +IV+ L  +          +L ++   EL+  +   + +       + RP VI+VVGVNG
Sbjct: 142 EIVDALRERVKVLGTREPALLREMLREELLRAVGTDVDRTLRTTRHADRPAVIMVVGVNG 201

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAA 180
            GKTT +GKL++ +      V+L A DTFR+AA +QL  W DR     V S+  G+D A+
Sbjct: 202 TGKTTTVGKLARVLVAEDKDVVLGAADTFRAAAAEQLATWGDRVGVPTVRSDKDGADPAS 261

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++A KQ    +VDV+I+DTAGRL N   LM  +GK+ RV++R  P     VL VLDAT
Sbjct: 262 VAFDAVKQGIDDEVDVVIVDTAGRLQNKVGLMDELGKVKRVVERHGP--VDEVLLVLDAT 319

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN LRQ  +F  V   TG+++TK+DGTA+GG ++ +  +  +PV  +G+GEG +DL P
Sbjct: 320 TGQNGLRQAAVFSEVVDVTGIVLTKLDGTAKGGIVVAVQRSLDVPVKLIGLGEGPDDLAP 379

Query: 301 FVAKDFSAVIT 311
           F  + F   + 
Sbjct: 380 FDPEAFVDALL 390


>gi|242310360|ref|ZP_04809515.1| signal recognition particle protein [Helicobacter pullorum MIT
           98-5489]
 gi|239522758|gb|EEQ62624.1| signal recognition particle protein [Helicobacter pullorum MIT
           98-5489]
          Length = 294

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 163/302 (53%), Gaps = 16/302 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L K    T+  +KE +    + ++L    +EELE++LI +D+   + + I+  L  
Sbjct: 1   MFNILKKTLQKTTQNIKELLPK--AHKKL---TKEELEEVLIATDMDYDLIEMILSPLGE 55

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           +    ++ V         L+          K      + +P V L+VGVNG GKTT I K
Sbjct: 56  EISKNELEVA--------LLRLFRGESYYDKVQAKQVNAKPCVDLIVGVNGAGKTTTIAK 107

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G  V+L AGDTFR+AAI+QL +W +R     + S+ G D +A+A++    A 
Sbjct: 108 LANLYQKQGKSVILGAGDTFRAAAIEQLSLWGERLKIPVISSKQGHDPSAVAFDTITSAA 167

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AK +D +IIDTAGRLHN S L   + K++R+  +    APH  + +LD T G ++L Q +
Sbjct: 168 AKNLDCVIIDTAGRLHNQSNLQNELQKIVRICNKAKEGAPHRKILILDGTQGTSSLDQAK 227

Query: 251 MFHAVA-GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           +F     G  G+I+TK+DGT++GG +  I+ T ++P+ ++GVGEG  DL  F    +   
Sbjct: 228 IFSQTLGGVDGVIITKLDGTSKGGAIFSIIHTLRVPILYIGVGEGAEDLIEFDESQYIQT 287

Query: 310 IT 311
           I 
Sbjct: 288 IL 289


>gi|156937833|ref|YP_001435629.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ignicoccus
           hospitalis KIN4/I]
 gi|156566817|gb|ABU82222.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ignicoccus
           hospitalis KIN4/I]
          Length = 442

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 87/271 (32%), Positives = 137/271 (50%), Gaps = 13/271 (4%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPL 99
             +EL+  LI+SD+ V +  ++ + +  +   +            +  V E +  +    
Sbjct: 26  FIKELQKTLIKSDVNVKLVLQLTKRIRERALKERPPPGASRRDWFVKIVYEELANLFGGD 85

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            +P        P VI++VGV G GKTT  GKL++     G +V L A DT+R  A DQL+
Sbjct: 86  KEP-ELKPPKVPWVIMMVGVQGSGKTTTAGKLARFYKVRGYRVALVAADTYRPGAKDQLR 144

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A+R    F   E G DA  +A    + A+++  +++I+DTAGR  N + L+  + +M 
Sbjct: 145 QLAERAKVLFYT-EPGDDAVGIAKRGVEWAKSQGAEIIIVDTAGRHKNEAELLKEMKEMS 203

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
             +K      P  V+ V+DA+ GQ A    E FH       +++TK+DGTA+GGG +  V
Sbjct: 204 EAIK------PDEVMLVIDASIGQQAKALAEAFHKTTPIGSIVVTKLDGTAKGGGALSAV 257

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
                 + F+G GE + +LEPF  K F A I
Sbjct: 258 AVTGATIKFVGTGEKLEELEPFKPKKFVARI 288


>gi|302408571|ref|XP_003002120.1| signal recognition particle 54 kDa protein [Verticillium albo-atrum
           VaMs.102]
 gi|261359041|gb|EEY21469.1| signal recognition particle 54 kDa protein [Verticillium albo-atrum
           VaMs.102]
          Length = 518

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 138/303 (45%), Gaps = 18/303 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLI-RSDIGVAVAQKIVEELLTKRYAKDV 79
                 ++   ++D+  +  LD+            RSD+ V +  ++ + + +    KD+
Sbjct: 3   LQDLGRRINTAVSDLTRAPNLDEK-----RSAPPPRSDVNVRLVGQLRKSIKSTVNFKDL 57

Query: 80  SVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                   + +      + K++ P ++PF      + +VI+ VG+ G GKTT   KL++ 
Sbjct: 58  PPAVNKKRLIQKTVFDELVKLVDPHAEPFKPK-KGKANVIMFVGLQGAGKTTTCTKLARH 116

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               GLK  L   DTFR+ A DQLK  A +    +  S   +D A +A E   + + ++ 
Sbjct: 117 YQARGLKACLVCADTFRAGAFDQLKQNATKAKIPYYGSLTETDPAVVAREGVDKFKKERF 176

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +V+I+DT+GR      L   +  +   +K      P   + VLDA+ GQ A  Q + F  
Sbjct: 177 EVIIVDTSGRHRQEENLFQEMVDIQAAIK------PDETIMVLDASIGQQAESQAKAFKE 230

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            A    +I+TK DG A GGG I  V     P+ F+G GE + D E F  + F   + G  
Sbjct: 231 AADFGAIIITKTDGHAHGGGAISAVAATHTPIVFIGTGEHMLDFERFAPQQFVQKLLGMG 290

Query: 315 DYG 317
           D  
Sbjct: 291 DMA 293


>gi|302306335|ref|NP_982582.2| AAR041Wp [Ashbya gossypii ATCC 10895]
 gi|299788468|gb|AAS50406.2| AAR041Wp [Ashbya gossypii ATCC 10895]
          Length = 514

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 144/307 (46%), Gaps = 18/307 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD-----DGVREELEDLLIRSDIGVAVAQKIVEELLTK-- 73
            A    ++   +   +++   D     + + + +   L+ +D+ + +   +   +  +  
Sbjct: 3   LADLGKRINAAVAQALNNDTDDYVAGVETMLKAIVTALLENDVNIKLVSSVRSNIKARLL 62

Query: 74  --RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVI 128
             +  + +   +    V + + + L  L       +     + +V++ VG+ G GKTT  
Sbjct: 63  ADKSGRRMGQAQTKQLVQKTVFEELCALVDCQTAAYQPKKKKSNVVMFVGLQGAGKTTSC 122

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+   S  G KV L   DTFR+ A DQLK  A +    F  S   ++   +A +   +
Sbjct: 123 TKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIKAKIPFYGSYTETNPVRVAADGVAK 182

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + ++ +++I+DT+GR H    L   + ++ + +K      P+  + VLDA+ GQ A +Q
Sbjct: 183 FKKERFEIIIVDTSGRHHQEDALFQEMVEIAQEVK------PNQTIMVLDASIGQAAEQQ 236

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F   A    +I+TKMDG A+GGG I  V   K PV F+G GE ++D E F  K F +
Sbjct: 237 SRAFKEAADFGAIILTKMDGHAKGGGAISAVAATKTPVIFIGTGEHVHDFEKFSPKSFVS 296

Query: 309 VITGCLD 315
            + G  D
Sbjct: 297 KLLGIGD 303


>gi|209554600|ref|YP_002284516.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|209542101|gb|ACI60330.1| signal recognition particle protein [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
          Length = 448

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 137/297 (46%), Gaps = 15/297 (5%)

Query: 25  SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
           S ++ + + +   +      +  E+   L+ +D+ + V +K ++ +  K     V   + 
Sbjct: 11  SKQMSKKLKNATIAEEDIKELLSEIRITLLDADVNLLVVKKFIKNIKEKTIGLYVEQNQK 70

Query: 85  -----LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA- 138
                L  + + + ++L   +KP N   S     I++VG+ G GKTT  GKL+    +  
Sbjct: 71  PADVVLKVIKDELVEILGKENKPVNTAKSQ--LKIMMVGLQGSGKTTTAGKLANYFRNKY 128

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             K +L A D +R AAIDQL+  A +   DF   E           A  +A   + +++I
Sbjct: 129 NKKPLLVAADIYRPAAIDQLRTLAKQVRVDFW-EEGTQRPDLTVKNALHKADENENNLVI 187

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL  N  LM  +  + + L       P  V  V+DA  GQ+ +     F+     
Sbjct: 188 VDTAGRLQTNEELMQELVNVKKTLN------PDEVFLVVDAMAGQDIINVATEFNNWLKL 241

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG+I+TK+D  AR G ++ +     +P+ F G GE I  ++ F  +  +  I G  D
Sbjct: 242 TGIIVTKLDSDARAGAVLSLTSLLNVPIKFTGTGEKIGSIDSFYPERMADRILGLGD 298


>gi|330836508|ref|YP_004411149.1| signal recognition particle-docking protein FtsY [Spirochaeta
           coccoides DSM 17374]
 gi|329748411|gb|AEC01767.1| signal recognition particle-docking protein FtsY [Spirochaeta
           coccoides DSM 17374]
          Length = 288

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 104/289 (35%), Positives = 158/289 (54%), Gaps = 4/289 (1%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
             L   +  +  ++  D+G  EELED LI SD+G  ++ +I + +  +  +  +      
Sbjct: 3   KSLGMKLKALFGAKTYDEGFFEELEDTLIESDLGPRLSMEISDMVRQEAKSGKLKTH--- 59

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
            D    +  +L     P+ +  +  P V LV+GVNGVGKTT I KL+      G KV+LA
Sbjct: 60  ADFLRFVSDILKEKVAPWVYQPASSPQVFLVLGVNGVGKTTTIAKLAYHFHLQGKKVLLA 119

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR+AA DQL++ A+R     V    GSD  A+ Y+A   AQA+  D++++DTAGR+
Sbjct: 120 AADTFRAAAADQLELHAERIGVRIVRQADGSDPGAVVYDAITSAQARHEDIILVDTAGRM 179

Query: 206 HNNSILMAGIGKMIRVL-KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           HN   L+  + K+ +++  +      +    VLDATTGQNAL Q E+FH       +I+T
Sbjct: 180 HNKENLLRELQKIDKIIANKNISADSYKKFLVLDATTGQNALSQAELFHQAVKLDAVILT 239

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           K D  A+GG +I I     +P+ ++G GE   DLE F A+ F + +   
Sbjct: 240 KYDSAAKGGTVIRIGEKLGLPIAYVGTGEKYTDLESFNAEKFLSDLVSL 288


>gi|293189829|ref|ZP_06608543.1| signal recognition particle-docking protein FtsY [Actinomyces
           odontolyticus F0309]
 gi|292821244|gb|EFF80189.1| signal recognition particle-docking protein FtsY [Actinomyces
           odontolyticus F0309]
          Length = 413

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 116/319 (36%), Positives = 185/319 (57%), Gaps = 11/319 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S+ +        + +L +  AS S  L   I  ++S  +L     EE+E+ L+ +D+G+ 
Sbjct: 94  SSIERPEPVRGRMERLRERLAS-SGSLGRAILGVLSRGQLGAADWEEIEESLLIADLGLE 152

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNW-----DFSHRPHVI 114
               ++E L  +   + V+ +  + ++       L+   + +  N      D S +P V+
Sbjct: 153 ATDTLMEALKRRVAVESVTDEARIREILREELLELVDPAMDRSLNLERPEVDGSGKPAVV 212

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE- 173
           L+VGVNG GKTT +GKL++ +      V+L A DTFR+AA DQL  W +R   D V S+ 
Sbjct: 213 LMVGVNGTGKTTTVGKLARILVAEDKSVILGAADTFRAAAADQLATWGERVGVDVVRSDR 272

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G+D A++A+EA ++   + VDV+++DTAGRL N S LM  +GK+ RV+ +  P +   V
Sbjct: 273 EGADPASVAFEAVREGVDRDVDVVLVDTAGRLQNKSTLMDELGKIKRVMTKQAPVS--EV 330

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLDATTGQN ++Q E+F    G TG+++TK+DG+A+GG ++ +     +PV F+G+GE
Sbjct: 331 LLVLDATTGQNGMKQAEVFAEATGVTGIVLTKLDGSAKGGIVVSVQRALGVPVKFVGLGE 390

Query: 294 GINDLEPFVAKDFSAVITG 312
           G +DL PF  + F   I G
Sbjct: 391 GADDLAPFDPQGFVDAIVG 409


>gi|150402723|ref|YP_001330017.1| signal recognition particle protein Srp54 [Methanococcus
           maripaludis C7]
 gi|166222336|sp|A6VHE0|SRP54_METM7 RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|150033753|gb|ABR65866.1| GTP-binding signal recognition particle SRP54 G- domain
           [Methanococcus maripaludis C7]
          Length = 450

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 150/308 (48%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVA----QKIVEELLT 72
                  L E +  I       ++L   V ++++  LI+SD+ V +     ++I  + + 
Sbjct: 2   LDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIE 61

Query: 73  KRYAKDVSVQRV-LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K +S +   +  V + +  +L   ++    D S +  VIL++G+ G GKTT   KL
Sbjct: 62  EAPPKGLSKKEHIVKIVYDELVNLLGETTQKLELDPSKK-SVILLIGIQGSGKTTSAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQAQ 190
           ++ +   GL+  L A D +R AA  QLK  +++ +      E  +     +  E  ++ +
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKLK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             KVDV+IIDTAGR      L+A + +M       D   P  ++ V+D T GQ A  Q +
Sbjct: 181 --KVDVIIIDTAGRHKEEEGLLAEMREMK------DLTNPTEIILVIDGTLGQQAKNQAK 232

Query: 251 MFHAVAGTTGLIM-TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            F       G I+ TK+DG+A+GGG +  V     P+ F+G GEG+++LE F  K F + 
Sbjct: 233 AFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISR 292

Query: 310 ITGCLDYG 317
           I G  D  
Sbjct: 293 ILGMGDLD 300


>gi|325998007|gb|ADZ50215.1| Signal recognition particle protein [Helicobacter pylori 2017]
          Length = 417

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 139/267 (52%), Gaps = 7/267 (2%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           ++  L+++D+   VA+++++++ ++     +  Q+ L  + + + ++L            
Sbjct: 1   MKKTLLKNDVHHKVARELLKKVESQTKLSGIGKQQFLDALEKSLLEILSAKGSSGFTFAQ 60

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P V+L+ G+ G GKTT   KL+  +     KV+L A D  R AA++QLK+  ++   +
Sbjct: 61  TPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVE 120

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E       +A  A K+A+  + DVL++D+AGRL  +  LM  + ++  VL      
Sbjct: 121 VF-HEENKSVKEIANNALKRAKEAQFDVLLVDSAGRLAIDKELMQELKEVKEVLN----- 174

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            PH VL V DA +GQ+ ++    F+   G +G++++K D  ++GG  + I     +P+ F
Sbjct: 175 -PHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGITYQLGLPLRF 233

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE I DL+ FV +     + G  D
Sbjct: 234 IGSGEKIPDLDVFVPERIVGRLMGAGD 260


>gi|152991963|ref|YP_001357684.1| signal recognition particle protein [Sulfurovum sp. NBC37-1]
 gi|151423824|dbj|BAF71327.1| signal recognition particle protein [Sulfurovum sp. NBC37-1]
          Length = 452

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 145/298 (48%), Gaps = 15/298 (5%)

Query: 26  LKLKEGITDIISSRRL--DDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +   + I   R   D+   +    EL+  L+++D+   V + ++  +  +     V
Sbjct: 3   DTLTDSFKNAIGKIRFHDDEKALKKATAELKKSLLKADVHHKVVKDLISSVELETKKNGV 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
                L  + + +  +L     P  + F S  P V+L++G+ G GKTT  GKL+  + + 
Sbjct: 63  GKDNFLKALQDKLTDILTIEGAPKGFTFASKPPTVVLMIGLQGSGKTTTTGKLAYFLKEQ 122

Query: 139 GLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
             K + + A D  R AA++QL+    +   D V  +  +    +   A K+A+ +  DV+
Sbjct: 123 KKKKVLVVAADLQRLAAVEQLRQITSQIDVDLVA-DENATPTEIVKRALKKAEDELYDVV 181

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDTAGRL  +  LM  + ++ +V        P  +  V DA TGQ+A+R  + F    G
Sbjct: 182 LIDTAGRLAIDDELMDELAEVKKVAN------PDELFYVADAMTGQDAVRTAQTFKDKIG 235

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            TG+I+TK DG ++GG  + +     +P+ F+G GE + DLE F+     + + G  D
Sbjct: 236 ITGVILTKFDGDSKGGVALGLTQQVGVPLRFIGAGEKMPDLEQFIPDRIVSRLMGAGD 293


>gi|33860570|ref|NP_892131.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33633512|emb|CAE18469.1| signal recognition particle docking protein FtsY [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 440

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 105/312 (33%), Positives = 177/312 (56%), Gaps = 5/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +++ + + W+ KL +G   T       + D +    L     ++LE LLIR+D+G+    
Sbjct: 126 EISIDEIDWLSKLRRGLEETRKGFVSELLDKLGDDPLTPESLDDLETLLIRADVGIDSTD 185

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVN 120
           K++  L  K   + V  +  +  + + +  ++    K    +       + +V L+VGVN
Sbjct: 186 KVINALRKKLNEEVVGGEEGIKFLKDELRAIIEKPIKNSGTNILVPQKGKLNVWLIVGVN 245

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAA 179
           GVGKTT +GKL+   S +  K ++AA DTFR+AA++QL++W DR+  D + ++  + D A
Sbjct: 246 GVGKTTTLGKLAYLSSKSNYKTLIAAADTFRAAAVEQLQVWGDRSKVDVISNQSKNADPA 305

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+ ++A   A  +K D+L++DTAGRL N + LM  + K+ +++ +  P A    L VLDA
Sbjct: 306 AVVFDAINAANKRKSDLLLVDTAGRLQNKNNLMDELSKIKKIIDKKVPDAIIESLLVLDA 365

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQN L+Q + F   A  +G I+TK+DGT+RGG  + +     +P+ F+G GEGI DL 
Sbjct: 366 SQGQNGLKQAKSFAKSANLSGAIITKLDGTSRGGVSLAVSAEVNLPIRFIGAGEGIKDLR 425

Query: 300 PFVAKDFSAVIT 311
           PF + +F   + 
Sbjct: 426 PFNSFEFVEALL 437


>gi|221134436|ref|ZP_03560741.1| signal recognition particle protein [Glaciecola sp. HTCC2999]
          Length = 404

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/210 (35%), Positives = 115/210 (54%), Gaps = 7/210 (3%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            +  P V+++ G+ G GKTT +GKL+K +S     KV++ + D +R AAI+QLK  A+  
Sbjct: 9   AAQPPAVVMMAGLQGAGKTTSVGKLAKLLSEREKKKVLVVSADVYRPAAIEQLKTLANDV 68

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             +F  S I      +  +A   A+ + VDVL++DTAGRL  +  +M  I  +   +K  
Sbjct: 69  GVEFFPSNIMQKPIDIVNDAIAHAKKQFVDVLLVDTAGRLAIDGEMMNEIKALHAAVK-- 126

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P   L V+DA TGQ+A    + F      TG+I+TK DG ARGG  + +      P
Sbjct: 127 ----PVETLFVVDAMTGQDAANTAKAFDETLPLTGVILTKADGDARGGAALSVRHITGKP 182

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G+GE ++ LEPF  +  ++ I G  D
Sbjct: 183 IKFIGMGEKLDALEPFHPERMASRILGMGD 212


>gi|297849956|ref|XP_002892859.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338701|gb|EFH69118.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 444

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 14/274 (5%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
               E+   L++SD+   + +++   +       D++       + E          +P 
Sbjct: 3   DCLNEITRALLQSDVSFPLVKEMQTNIKKIVNLDDLAAGHNKRLIIE-------QDERPV 55

Query: 104 NWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                 +P  V++ VG+ G GKTT   K +      G K  L   DTFR+   DQLK  A
Sbjct: 56  FAPKKAKPSSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKTALVCADTFRAGVFDQLKQNA 115

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +    F  S   SD   +A E   + + +K D++I+DT+GR    + L         +L
Sbjct: 116 TKAKIPFYGSYTESDPVKIAAEGVDRFKKEKCDLIIVDTSGRHKQEASLCEE------IL 169

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           +  +   P  V+ V+D++ GQ A  Q + F        +I+TKMDG A+GGG +  V   
Sbjct: 170 QVAEATEPDLVIFVMDSSIGQAAFDQAQAFKQTVSVGAVIITKMDGHAKGGGALSAVAAT 229

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           K PV F+G GE +++ E F  K F + + G  D+
Sbjct: 230 KSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDW 263


>gi|302654843|ref|XP_003019220.1| hypothetical protein TRV_06769 [Trichophyton verrucosum HKI 0517]
 gi|291182928|gb|EFE38575.1| hypothetical protein TRV_06769 [Trichophyton verrucosum HKI 0517]
          Length = 504

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 132/278 (47%), Gaps = 12/278 (4%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPL 99
           + +E+   L+ +D+ V + Q++ + +        +        + +      +  ++ P 
Sbjct: 1   MIKEICAALLSADVNVRLVQQLRKSIKAAVQLPSIPPAVNKKRLIQKAVFDQLVALVDPH 60

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           ++PF      + +VI++VG+ G GKTT   KL++     G K  L   DT R+ A DQLK
Sbjct: 61  AEPFKPK-KGKSNVIMMVGLQGAGKTTTCTKLARHYQTKGFKAALVCADTLRAGAFDQLK 119

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A +    +  S   +D   ++ E   + + ++ D++I+DT+GR      L A + ++ 
Sbjct: 120 QNATKAKIPYYGSLTQTDPVVVSSEGVAKFKKERFDIIIVDTSGRHRQEEDLFAEMTQIQ 179

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
             +K      P   + VLD+T GQ A  Q   F + A    +I+TK DG A GGG I  V
Sbjct: 180 SAIK------PDQTIMVLDSTIGQAAETQSAAFKSAADFGAIIITKTDGHAAGGGAISAV 233

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
              + P+ FLG GE + DLE F  + F   + G  D  
Sbjct: 234 AATRTPIIFLGTGEHMLDLERFAPRPFVQKLLGMGDMA 271


>gi|159040882|ref|YP_001540134.1| GTP-binding signal recognition particle [Caldivirga maquilingensis
           IC-167]
 gi|157919717|gb|ABW01144.1| GTP-binding signal recognition particle SRP54 G- domain [Caldivirga
           maquilingensis IC-167]
          Length = 449

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/300 (29%), Positives = 148/300 (49%), Gaps = 17/300 (5%)

Query: 26  LKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVS 80
             +   I+ I  S  +D+     +  +L+  LIR+D+ V +  ++ + +  + + AK++ 
Sbjct: 6   DAIGSIISRIRGSTLIDEETLRSILRDLQRALIRADVDVKLVYELTKSIEEEFKEAKELP 65

Query: 81  V-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                   ++Y +   +  +L    +P + +   +P+++++VG  G GKTT  GKL+   
Sbjct: 66  PGLTAKDYLVYLLYRKLTDLLGGDKEP-DVEVKTKPYILMLVGTEGSGKTTTAGKLANFY 124

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              GLKV L   DT R  A DQL+  A+R  A F       +A  +A     +  + K D
Sbjct: 125 IKRGLKVGLIETDTIRPGAFDQLRQLAERVKAMFFGDPSLGNAVNIAKAGLSRMISSKAD 184

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++IIDTAGR  N   L++ + ++   +K      P+ V+ V+DAT G+    Q E F   
Sbjct: 185 LIIIDTAGRHRNEEELLSEVKEIYEAVK------PNEVMLVVDATNGKQVGAQAEAFSKY 238

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                + +TK+D TA+GGG +   V     + F+G GE I D+E F  + F A + G  D
Sbjct: 239 VPVNSIFITKLDSTAKGGGALVSAVKTGARIKFIGNGEDIEDIEVFNPRRFVARLMGMGD 298


>gi|159900675|ref|YP_001546922.1| signal recognition particle-docking protein FtsY [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893714|gb|ABX06794.1| signal recognition particle-docking protein FtsY [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 321

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 125/311 (40%), Positives = 173/311 (55%), Gaps = 5/311 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGV 60
           S Q++  E     +K+ +    T       IT +  S   + + + +ELE+LLI  D+G 
Sbjct: 12  SEQEIKQEE----KKIEQSVQKTRSGFFGRITAMFRSEDPITNELWDELEELLIAGDVGA 67

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A KIVE +  K   K          + +      + +  P   + S +P+VILVVGVN
Sbjct: 68  ENALKIVERVREKCEKKGFKFASEARSLLKSELVNRLDVDTPQYSERSTKPYVILVVGVN 127

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT+I KL+ +    G  V+LAA DTFR+AAIDQL+ WADR     +  + GSD  A
Sbjct: 128 GVGKTTLIAKLANRYKAMGKNVILAAADTFRAAAIDQLQHWADRVGVPMISQQPGSDPGA 187

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY+A +    ++ DVLIIDTAGRL +   LM  + K+  V+K+   +APH VL VLDAT
Sbjct: 188 VAYDATQATYNQQADVLIIDTAGRLQSKHNLMKELEKISNVVKKRWQYAPHEVLLVLDAT 247

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN L Q   F   A  T L +TK+DGTA+GG    IV   + P+ ++G GE INDL  
Sbjct: 248 TGQNGLIQARAFTQAAQVTHLALTKLDGTAKGGIAFAIVQEIERPIKYIGTGETINDLAL 307

Query: 301 FVAKDFSAVIT 311
           F  + F   + 
Sbjct: 308 FDGESFVNALF 318


>gi|43142|emb|CAA25957.1| unnamed protein product [Escherichia coli]
          Length = 368

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 8/221 (3%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAA 154
           +   ++  N   +  P V+L+ G+ G GKTT +GKL K + +    KV++ + D +R AA
Sbjct: 1   MGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA 59

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           I QL+  A++   DF  S++G     +   A K+A+ K  DVL++DTAGRLH +  +M  
Sbjct: 60  IKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDE 119

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           I ++   +       P   L V+DA TGQ+A    + F+     TG+++TK+DG ARGG 
Sbjct: 120 IKQVHASIN------PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGA 173

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + I      P+ FLGVGE    LEPF     ++ I G  D
Sbjct: 174 ALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGD 214


>gi|13123461|gb|AAK12834.1|AF238499_1 chloroplast SRP54 precursor [Chlamydomonas reinhardtii]
          Length = 549

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 139/308 (45%), Gaps = 22/308 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L++        + +  +  +++  + +   +E+   L+ +D+ + V ++ ++++  
Sbjct: 66  MFDSLSRSIEKAQRLIGK--SGTLTAENMKEP-LKEVRRALLEADVSLPVVRRFIKKVEE 122

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +     V        + +  VS  +  ++   ++   W  + R  +IL+ G+ GVG+   
Sbjct: 123 RALGTKVLEGVTPDVQFIKTVSNELIDLMGGGNRGKTWSRASR-KIILMAGLQGVGRHC- 180

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GKL+  +     + +L   D +  AA  QL   A                  +A +  +
Sbjct: 181 AGKLALYLR---ARELLLLHDVY--AAHRQLSAGA-AIDVPVFEDGTDVSPVRIAKKGVE 234

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+   VD +IIDTAGRL  +  +MA +  +   ++  D       L V+DA TGQ A  
Sbjct: 235 EARRLGVDAVIIDTAGRLQVDEGMMAELRDVKSAVRPSD------TLLVVDAMTGQEAAN 288

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            V  F+     +G I+TKMDG +RGG  + +      P+ F+GVGE +  LEPF  +  +
Sbjct: 289 LVRSFNEAVDISGAILTKMDGDSRGGAALSVREVSGKPIKFVGVGEKMEALEPFYPERMA 348

Query: 308 AVITGCLD 315
           + I G  D
Sbjct: 349 SRILGMGD 356


>gi|307594172|ref|YP_003900489.1| signal recognition particle-docking protein FtsY [Vulcanisaeta
           distributa DSM 14429]
 gi|307549373|gb|ADN49438.1| signal recognition particle-docking protein FtsY [Vulcanisaeta
           distributa DSM 14429]
          Length = 305

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/311 (30%), Positives = 153/311 (49%), Gaps = 19/311 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
              KL   F S +  +   IT   +S  +L++ +R+EL   L+ SD+ V VA  I   ++
Sbjct: 1   MFDKLKNAFKSLTNTIVNSITTTELSEDKLNE-IRDELFMQLVESDVAVDVADAISNAIV 59

Query: 72  TKRYAKDVSVQRVLYDVS-----ELIHKMLMP------LSKPFNWDFSHRPHVILVVGVN 120
                  V        V      +++ K+         +S+        +P V+L +G N
Sbjct: 60  NYLRGLKVPRFGDKESVIKNGIIDIMSKLFSDIPDVDFMSEVIRLLQMKKPVVLLFLGPN 119

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT I K++ ++   G   + AA DT+R+ AI+QL+  A +     +    GSD AA
Sbjct: 120 GYGKTTTIAKITHQLMKRGYTAVWAAADTYRAGAIEQLEGHATKLGVRVIKHGYGSDPAA 179

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY+A   A+ + +D ++IDTAGR+H +  LM  + K+ RV        P   + + DA 
Sbjct: 180 VAYDAINHAKVRGIDYVMIDTAGRMHTDINLMNELSKIQRV------SRPDLSIFIADAL 233

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            G  AL   + +       GLI+TK+D   +GG ++  +   K P+YFLGVG+G +DL P
Sbjct: 234 LGNEALDIAKYYSKYVKIDGLIVTKVDAYPKGGAILTFLYELKKPIYFLGVGQGYDDLRP 293

Query: 301 FVAKDFSAVIT 311
           F   +F   + 
Sbjct: 294 FSKAEFFRQLI 304


>gi|332670008|ref|YP_004453016.1| signal recognition particle-docking protein FtsY [Cellulomonas fimi
           ATCC 484]
 gi|332339046|gb|AEE45629.1| signal recognition particle-docking protein FtsY [Cellulomonas fimi
           ATCC 484]
          Length = 406

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 178/316 (56%), Gaps = 11/316 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V +     + +L    + +   L   +  ++S   L +   +ELE+ L+ +D+G     
Sbjct: 91  EVPAPVAGRLTRLRDRLSRSGSPLGTRLLQVLSRDHLTEDDWDELEETLLLADVGAGPTT 150

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRP------HVILV 116
           +IV+ L T+   + +     +  V   +L+  +   L +      +  P       V+LV
Sbjct: 151 EIVDALRTRVRVEGLREPGQVRAVLRDQLLAIVDPSLDRTLGTAPTTTPDGATVPAVVLV 210

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IG 175
           VGVNG GKTT +GKL++ +   G  V+L A DTFR+AA DQL+ W  R     V S+  G
Sbjct: 211 VGVNGTGKTTTVGKLARVLVAEGRSVVLGAADTFRAAAADQLETWGSRVGVRTVRSDRDG 270

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++A++A +  +A+ VDV+++DTAGRL N + LM  +GK+ RVL R  P     VL 
Sbjct: 271 ADPASVAFDAVRTGRAEGVDVVLVDTAGRLQNKAGLMDELGKITRVLTREAP--LSEVLL 328

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQN L Q  +F  VAG TG+++TK+DGTA+GG ++ +     +PV  +G+GEG 
Sbjct: 329 VLDATTGQNGLNQARVFAEVAGVTGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGP 388

Query: 296 NDLEPFVAKDFSAVIT 311
           +DL PF  + F   I 
Sbjct: 389 DDLAPFDPEAFVDGIL 404


>gi|256082003|ref|XP_002577253.1| signal recognition particle 54 kD protein [Schistosoma mansoni]
 gi|238662557|emb|CAZ33490.1| signal recognition particle 54 kD protein, putative [Schistosoma
           mansoni]
          Length = 538

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 16/298 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   LI +D+ + + +++ E +      
Sbjct: 3   LAELGRKITNALRSLGNATIINEDVLNSLLKEICTALIEADVNIRLVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ ++++   V + +  ++ P  K +        +VI++VG+ G GKTT   KL
Sbjct: 63  DEMAAGLNKRKIIQSAVFKELVHLVDPQVKAWQ-PARGSSNVIMLVGLQGCGKTTTATKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  +   DTFR+ A DQLK  A +    F  S   +D   +A +  ++   
Sbjct: 122 AYFYQRKGWKTCMICADTFRAGAFDQLKQNATKARIPFYGSYTETDPVVIARDGVQKFVE 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K +++I+DT+GR      L   + ++   ++      P  V+ VLDA+ GQ    Q   
Sbjct: 182 EKFEIIIVDTSGRHRQEDSLFEEMLQVSNAIE------PDHVIYVLDASIGQACEAQASA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           F A    + +I+TK+DG A+GGG +  V     P+ F+G GE + D E F  + F   
Sbjct: 236 FKAKVDVSSVIVTKLDGHAKGGGALSAVAATHSPITFIGTGEHVEDFEQFRVQPFVQK 293


>gi|325968430|ref|YP_004244622.1| signal recognition particle-docking protein FtsY [Vulcanisaeta
           moutnovskia 768-28]
 gi|323707633|gb|ADY01120.1| signal recognition particle-docking protein FtsY [Vulcanisaeta
           moutnovskia 768-28]
          Length = 305

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 99/313 (31%), Positives = 159/313 (50%), Gaps = 23/313 (7%)

Query: 13  WIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
              KL   F S +  +   IT   +S  +L + +R+EL   L+ SD+ V VA  I + ++
Sbjct: 1   MFDKLKNAFKSFTNTIVNSITTTELSEDKLSE-IRDELFMQLVESDVAVDVADAICDAII 59

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-------------SHRPHVILVVG 118
              Y + + V R     S + + +L  ++K FN                + +P V+L +G
Sbjct: 60  N--YLRGIKVPRFGDKESMIRNGILDVMNKLFNDIPDVDFMGEVTRILQNKKPVVLLFLG 117

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
            NG GKTT I K++ ++   G   + AA DT+R+ AI+QL+  A +     +    GSD 
Sbjct: 118 PNGYGKTTTIAKITYQLMRRGYTAVWAAADTYRAGAIEQLEGHATKLGVRVIKHSYGSDP 177

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+AY+A   A+ + +D ++IDTAGR+H +  LM  + K+ RV        P   + + D
Sbjct: 178 AAVAYDAISHAKVRSIDYVMIDTAGRMHTDINLMNELSKIQRV------SRPDLSIFIAD 231

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  G  AL   + +       GLI+TK+D   +GG ++  +   K P+YFLGVG+G +DL
Sbjct: 232 ALLGNEALDIAKYYSKYVRIDGLIVTKVDAYPKGGAILTFLYELKKPIYFLGVGQGYDDL 291

Query: 299 EPFVAKDFSAVIT 311
            PF   +F   + 
Sbjct: 292 RPFNKMEFFRQLI 304


>gi|154174570|ref|YP_001408556.1| signal recognition particle protein [Campylobacter curvus 525.92]
 gi|112803067|gb|EAU00411.1| signal recognition particle protein [Campylobacter curvus 525.92]
          Length = 446

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 142/298 (47%), Gaps = 12/298 (4%)

Query: 26  LKLKEGITDIISSRR-LDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            ++ E     +S  R +DD        + L+  L+++D+   V + ++  +        V
Sbjct: 3   EQISESFRLAVSKIRFVDDEKALKNALDVLKKALLKADVHHKVTKDLLAAIENDIKKTGV 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             +  L  +   +  +L           S  P ++L+ G+ G GKTT   KL+  +    
Sbjct: 63  GQKNFLDAIKSNLTNILTAPGNQGFVYSSSAPTIVLMAGLQGSGKTTTTIKLANYLKLRK 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV++AA D  R AA++QL+   +    D    E  +D   +A  A ++A++   DVL++
Sbjct: 123 KKVLVAACDLQRLAAVEQLRQLCEANEIDLFFIEGENDPIKVARAALQKAKSGLYDVLLV 182

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL  +  LM  I  +   +K      PH +  V DA +GQ+ ++    F+     T
Sbjct: 183 DTAGRLAIDETLMNEIKLVKEAIK------PHEIFYVADAMSGQDGVKSAASFNEALNIT 236

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           G+I++K D  ++GG  I I    +IP+ F+G+GE  +DLE F+ +   + I G  D  
Sbjct: 237 GVILSKFDSDSKGGVAISIAKQLEIPLRFVGIGEKASDLESFIPERIVSRIMGEGDLA 294


>gi|76800703|ref|YP_325711.1| signal recognition particle 54K protein [Natronomonas pharaonis DSM
           2160]
 gi|121718419|sp|Q3IUP1|SRP54_NATPD RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|76556568|emb|CAI48139.1| signal recognition particle 54K protein [Natronomonas pharaonis DSM
           2160]
          Length = 466

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 130/301 (43%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L+  +  +     L +     + +E++  L+ +D+ V +   + + +  +   
Sbjct: 3   LDDLGSSLRGTLDKLQGKTTLSEDDVEEIVKEIQRSLLSADVDVDLVMDLSDSIRERALD 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++        D V +++++ ++ L              I++ G+ G GKTT   K++   
Sbjct: 63  EEPPAGTTARDHVLKIVYEEMVELVGEST-ALPLEEQTIVLAGLQGSGKTTTAAKMAWWF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  GL+  +   DTFR  A DQ K   +R   DF  +    D   +A    ++      D
Sbjct: 122 SKKGLRPAVIQTDTFRPGAYDQAKEMCERAEVDFYGNPDSDDPVEIAERGLEETAD--AD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I+DTAGR      L+  +  +   +       P   L VLDA  GQ A  Q E FH  
Sbjct: 180 VHIVDTAGRHALEEALIDELEAIESAVD------PDRNLLVLDAAIGQGAKDQAERFHDA 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+ +TK+DGTA+GGG +  V      + FLG GE + D+E F    F + + G  D
Sbjct: 234 VGIDGVAITKLDGTAKGGGALAAVDQTDSSIAFLGTGEEVKDIERFEPSGFISRLLGMGD 293

Query: 316 Y 316
            
Sbjct: 294 L 294


>gi|73668009|ref|YP_304024.1| signal recognition particle-docking protein FtsY [Methanosarcina
           barkeri str. Fusaro]
 gi|72395171|gb|AAZ69444.1| signal recognition particle-docking protein FtsY [Methanosarcina
           barkeri str. Fusaro]
          Length = 422

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 157/299 (52%), Gaps = 14/299 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           GF   +  L       + S+ LD+ + E LE  L+ SD+ ++V++ IVE + T+      
Sbjct: 124 GFTKKAKALVLNREVYLDSKDLDEPLWE-LEMGLLESDLALSVSEAIVESVKTQLTGTTK 182

Query: 80  SVQRVL-YDVSELIHKMLMPLSKPFNWDF------SHRPHVILVVGVNGVGKTTVIGKLS 132
            +       V E + K ++ +     +DF        +P  I+ VG+NG GKTT I K++
Sbjct: 183 RIGSNTGEIVEEALKKAILEVVSANTFDFDEYVRDREKPVHIVFVGINGTGKTTSIAKIT 242

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            ++  +   V+LAAGDTFR+ AIDQL I ADR     +  + G+D AA+ Y+A + A+  
Sbjct: 243 HRLLKSDYSVVLAAGDTFRAGAIDQLGIHADRLGVKMIKHQPGADPAAVIYDAVQYAKGH 302

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K+D ++ DTAGR+H N  LM+ + K+ RV        P  ++ V +A  G +A+ +   F
Sbjct: 303 KIDFVLSDTAGRMHTNLNLMSQMEKICRVST------PDLIIFVDEAVAGNDAVERAAQF 356

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +      G I+TK+D  A+GG  I I      P+ F G+G+G  DL+ F  + F   + 
Sbjct: 357 NEAVPIDGSILTKIDADAKGGAAISIAYITGKPILFFGIGQGYEDLKKFDPEWFIDQLF 415


>gi|152992192|ref|YP_001357913.1| signal recognition particle receptor FtsY [Sulfurovum sp. NBC37-1]
 gi|151424053|dbj|BAF71556.1| signal recognition particle receptor FtsY [Sulfurovum sp. NBC37-1]
          Length = 288

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 162/299 (54%), Gaps = 16/299 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
                 K    T+  +KE + +           +EE ED+L+ +D+   +A+++++ L  
Sbjct: 1   MFNLFKKVLGKTNDAIKEVVIEKKKEIS-----KEEFEDILLEADVNYELAERLLDALPE 55

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K     +     L  V +          K    + + +P+V +++GVNG GKTT I KL+
Sbjct: 56  KINR--IQAFNSLISVFQ---------YKADWKESNAKPYVEMIIGVNGAGKTTTIAKLA 104

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +    G  V+L AGDTFR+AAI+QL  WAD+     V +  G D +A+ Y+  + A+A+
Sbjct: 105 YRYQQEGKGVILGAGDTFRAAAIEQLIRWADKLEVPIVSTRQGHDPSAVVYDTIEAAKAR 164

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           ++D +IIDTAGRLH  + L   + KMIRV  +    APH  + +LD T G +++ Q   F
Sbjct: 165 RLDNVIIDTAGRLHTQTNLSEELKKMIRVAGKAMEGAPHRKMLILDGTQGSSSINQARAF 224

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             + G  G+I+TK+DGTA+GG ++ I    ++P++++G GE   DL  F A ++   I 
Sbjct: 225 DEMIGIDGIIITKLDGTAKGGSVLSIADELQMPIFYIGTGEQPKDLIRFKANEYINTIL 283


>gi|293510004|ref|ZP_06668712.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus M809]
 gi|291466948|gb|EFF09466.1| signal recognition particle-docking protein FtsY [Staphylococcus
           aureus subsp. aureus M809]
          Length = 228

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 103/207 (49%), Positives = 137/207 (66%), Gaps = 1/207 (0%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +L+VGVNGVGKTT IGKL+ +    G KVMLAAGDTFR+ AIDQLK+W +R   D +   
Sbjct: 1   MLMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQS 60

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            GSD AA+ Y+A   A+ K VD+LI DTAGRL N + LM  + K+ RV+ R  P APH  
Sbjct: 61  EGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEA 120

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L  LDATTGQNAL Q   F  V   TG+++TK+DGTA+GG ++ I     IPV ++G+GE
Sbjct: 121 LLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGE 180

Query: 294 GINDLEPFVAKDFSAVITG-CLDYGEE 319
            ++DL+PF  + +   +    ++  EE
Sbjct: 181 QLDDLQPFNPESYVYGLFADMIEQNEE 207


>gi|114328274|ref|YP_745431.1| signal recognition particle, subunit FFH/SRP54 [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316448|gb|ABI62508.1| signal recognition particle, subunit FFH/SRP54 [Granulibacter
           bethesdensis CGDNIH1]
          Length = 455

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 142/306 (46%), Gaps = 18/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL      +     L++  V E L +    ++ +D+ + V +  +  +  +   
Sbjct: 2   FDTLSGKLTGVFDKLRGRGALNEADVAEALREVRLAMLDADVALPVVKDFIASVRERAAG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V       Q+V+  V + + + L      P N +      V L+VG+ G GKTT  GK
Sbjct: 62  AEVIDSVAPGQQVMKIVHDALIEQLGGAGAVPLNLNAVAPVPV-LMVGLQGSGKTTTSGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+ ++      +V+LA+ DT R AA  QL+  A++     +    G     +A  A +  
Sbjct: 121 LALRLAKKERRRVLLASLDTQRPAAQLQLQQLAEQAGVASLPIIQGQTPVEIARRAMETG 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  D++I+DTAGRL  +  LM  +  +           P   L V+DA TGQ+A+   
Sbjct: 181 RREVYDIVILDTAGRLAIDEELMEEVKAI------RAETNPSETLLVVDAMTGQDAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+   G TG++MT+MDG ARGG  + +      P+   G GE ++ LE F  +  +  
Sbjct: 235 RAFNEAVGVTGIVMTRMDGDARGGAALSMRAVTGAPIKLTGSGEKLDALEDFHPERVAGR 294

Query: 310 ITGCLD 315
           I G  D
Sbjct: 295 ILGLGD 300


>gi|15610058|ref|NP_217437.1| cell division protein FtsY [Mycobacterium tuberculosis H37Rv]
 gi|15842465|ref|NP_337502.1| signal recognition particle FtsY [Mycobacterium tuberculosis
           CDC1551]
 gi|31794097|ref|NP_856590.1| cell division protein FtsY [Mycobacterium bovis AF2122/97]
 gi|121638802|ref|YP_979026.1| putative cell division protein ftsY [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662765|ref|YP_001284288.1| signal recognition particle FtsY [Mycobacterium tuberculosis H37Ra]
 gi|148824110|ref|YP_001288864.1| cell division protein ftsY [Mycobacterium tuberculosis F11]
 gi|215404896|ref|ZP_03417077.1| cell division protein ftsY [Mycobacterium tuberculosis 02_1987]
 gi|215412763|ref|ZP_03421475.1| cell division protein ftsY [Mycobacterium tuberculosis 94_M4241A]
 gi|215428363|ref|ZP_03426282.1| cell division protein ftsY [Mycobacterium tuberculosis T92]
 gi|224991294|ref|YP_002645983.1| putative cell division protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253797991|ref|YP_003030992.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 1435]
 gi|254233011|ref|ZP_04926338.1| cell division protein ftsY [Mycobacterium tuberculosis C]
 gi|260187940|ref|ZP_05765414.1| cell division protein ftsY [Mycobacterium tuberculosis CPHL_A]
 gi|260202056|ref|ZP_05769547.1| cell division protein ftsY [Mycobacterium tuberculosis T46]
 gi|260206240|ref|ZP_05773731.1| cell division protein ftsY [Mycobacterium tuberculosis K85]
 gi|289444476|ref|ZP_06434220.1| cell division protein ftsY [Mycobacterium tuberculosis T46]
 gi|289448586|ref|ZP_06438330.1| cell division protein ftsY [Mycobacterium tuberculosis CPHL_A]
 gi|289553290|ref|ZP_06442500.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 605]
 gi|289575626|ref|ZP_06455853.1| cell division protein ftsY [Mycobacterium tuberculosis K85]
 gi|289746720|ref|ZP_06506098.1| cell division protein FtsY [Mycobacterium tuberculosis 02_1987]
 gi|289751587|ref|ZP_06510965.1| cell division protein ftsY [Mycobacterium tuberculosis T92]
 gi|294993982|ref|ZP_06799673.1| cell division protein ftsY [Mycobacterium tuberculosis 210]
 gi|297635540|ref|ZP_06953320.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 4207]
 gi|297732539|ref|ZP_06961657.1| cell division protein ftsY [Mycobacterium tuberculosis KZN R506]
 gi|298526390|ref|ZP_07013799.1| cell division protein ftsY [Mycobacterium tuberculosis 94_M4241A]
 gi|306777211|ref|ZP_07415548.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu001]
 gi|306781118|ref|ZP_07419455.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu002]
 gi|306785757|ref|ZP_07424079.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu003]
 gi|306789797|ref|ZP_07428119.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu004]
 gi|306794610|ref|ZP_07432912.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu005]
 gi|306798854|ref|ZP_07437156.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu006]
 gi|306804699|ref|ZP_07441367.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu008]
 gi|306808892|ref|ZP_07445560.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu007]
 gi|306968991|ref|ZP_07481652.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu009]
 gi|306973328|ref|ZP_07485989.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu010]
 gi|307081034|ref|ZP_07490204.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu011]
 gi|307085633|ref|ZP_07494746.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu012]
 gi|313659871|ref|ZP_07816751.1| signal recognition particle-docking protein FtsY [Mycobacterium
           tuberculosis KZN V2475]
 gi|54037143|sp|P66843|FTSY_MYCBO RecName: Full=Cell division protein ftsY homolog
 gi|54041037|sp|P66842|FTSY_MYCTU RecName: Full=Cell division protein ftsY homolog
 gi|1405957|emb|CAA98981.1| PROBABLE CELL DIVISION PROTEIN FTSY (SRP RECEPTOR) (SIGNAL
           RECOGNITION PARTICLE RECEPTOR) [Mycobacterium
           tuberculosis H37Rv]
 gi|13882770|gb|AAK47316.1| signal recognition particle FtsY [Mycobacterium tuberculosis
           CDC1551]
 gi|31619692|emb|CAD96632.1| PROBABLE CELL DIVISION PROTEIN FTSY [Mycobacterium bovis AF2122/97]
 gi|121494450|emb|CAL72931.1| Probable cell division protein ftsY [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124602070|gb|EAY61080.1| cell division protein ftsY [Mycobacterium tuberculosis C]
 gi|148506917|gb|ABQ74726.1| signal recognition particle FtsY [Mycobacterium tuberculosis H37Ra]
 gi|148722637|gb|ABR07262.1| cell division protein ftsY [Mycobacterium tuberculosis F11]
 gi|224774409|dbj|BAH27215.1| putative cell division protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253319494|gb|ACT24097.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 1435]
 gi|289417395|gb|EFD14635.1| cell division protein ftsY [Mycobacterium tuberculosis T46]
 gi|289421544|gb|EFD18745.1| cell division protein ftsY [Mycobacterium tuberculosis CPHL_A]
 gi|289437922|gb|EFD20415.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 605]
 gi|289540057|gb|EFD44635.1| cell division protein ftsY [Mycobacterium tuberculosis K85]
 gi|289687248|gb|EFD54736.1| cell division protein FtsY [Mycobacterium tuberculosis 02_1987]
 gi|289692174|gb|EFD59603.1| cell division protein ftsY [Mycobacterium tuberculosis T92]
 gi|298496184|gb|EFI31478.1| cell division protein ftsY [Mycobacterium tuberculosis 94_M4241A]
 gi|308214420|gb|EFO73819.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu001]
 gi|308326065|gb|EFP14916.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu002]
 gi|308329537|gb|EFP18388.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu003]
 gi|308333730|gb|EFP22581.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu004]
 gi|308337087|gb|EFP25938.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu005]
 gi|308340899|gb|EFP29750.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu006]
 gi|308344736|gb|EFP33587.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu007]
 gi|308348716|gb|EFP37567.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu008]
 gi|308353412|gb|EFP42263.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu009]
 gi|308357231|gb|EFP46082.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu010]
 gi|308361240|gb|EFP50091.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu011]
 gi|308364860|gb|EFP53711.1| cell division protein ftsY [Mycobacterium tuberculosis SUMu012]
 gi|323718532|gb|EGB27703.1| cell division protein ftsY [Mycobacterium tuberculosis CDC1551A]
 gi|326904535|gb|EGE51468.1| cell division protein ftsY [Mycobacterium tuberculosis W-148]
 gi|328457765|gb|AEB03188.1| cell division protein ftsY [Mycobacterium tuberculosis KZN 4207]
          Length = 422

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 166/307 (54%), Gaps = 5/307 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
                + +L    A +   L  G+  +I    LD+   +++ED L+ +D+G A    +V 
Sbjct: 118 PPEGRLERLRGRLARSQNALGRGLLGLIGGGDLDEDSWQDVEDTLLVADLGPAATASVVS 177

Query: 69  ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGKT 125
           +L ++  + +V  +     V  +++   L P           +  P V+LVVGVNG GKT
Sbjct: 178 QLRSRLASGNVRTEADARAVLRDVLINELQPGMDRSIRALPHAGHPSVLLVVGVNGTGKT 237

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A  V    G+D A++A++A
Sbjct: 238 TTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAARVGAAVVRGPEGADPASVAFDA 297

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +  A   DV++IDTAGRLH    LM  + K+ RV+ R        VL VLDAT GQN 
Sbjct: 298 VDKGIAAGADVVLIDTAGRLHTKVGLMDELDKVKRVVTRRAS--VDEVLLVLDATIGQNG 355

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q  +F  V   +G ++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    
Sbjct: 356 LAQARVFAEVVDISGAVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAA 415

Query: 306 FSAVITG 312
           F   + G
Sbjct: 416 FVDALLG 422


>gi|154147877|ref|YP_001406144.1| signal recognition particle protein [Campylobacter hominis ATCC
           BAA-381]
 gi|153803886|gb|ABS50893.1| signal recognition particle protein [Campylobacter hominis ATCC
           BAA-381]
          Length = 444

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 138/302 (45%), Gaps = 14/302 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F + S   +  +  +   R +DD          L+  L+++D+   V +  +  +     
Sbjct: 2   FETISESFRAAVNKL---RMIDDEKALKNALNTLKKALLKADVHHKVTKDFLTLVENDMK 58

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +  V  ++ L  +   +  +L           S  P V+L+ G+ G GKTT   KL+  +
Sbjct: 59  SGVVGQKQFLDSIKNNLTTVLTAPGNQGFVFASQNPTVVLMAGLQGSGKTTTTVKLANYL 118

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                KV++AA D  R AA++QL+   +    +    E   +   +A EA  +A+    D
Sbjct: 119 KLRKKKVLIAACDLQRLAAVEQLRQLCEANEIELFYIENEKNPKKVAKEAILKAKKGLYD 178

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           VL+IDTAGRL  +  LM  + ++ ++        P  +  V DA +GQ+ +R    F+  
Sbjct: 179 VLLIDTAGRLAIDEELMDELKEIKKISN------PDEIFYVADAMSGQDGVRSAANFNEK 232

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G +G+I++K D   +GG  + I     IP+ F+G GE I D E F+ +   + I G  D
Sbjct: 233 LGISGVILSKFDADTKGGVALGIAKQLNIPLRFIGTGEKIADFEGFIPERIVSRIMGEGD 292

Query: 316 YG 317
             
Sbjct: 293 LA 294


>gi|241764418|ref|ZP_04762443.1| signal recognition particle-docking protein FtsY [Acidovorax
           delafieldii 2AN]
 gi|241366208|gb|EER60779.1| signal recognition particle-docking protein FtsY [Acidovorax
           delafieldii 2AN]
          Length = 327

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 121/303 (39%), Positives = 175/303 (57%), Gaps = 5/303 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E   W+ +L  G   T       I  + +  ++DD + EELE+ L+ +D GV   Q ++E
Sbjct: 29  ERKGWLDRLKAGLRKT----GSSIATVFTGTQIDDTLYEELEEALLMADTGVKATQHLLE 84

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +L  +      +    +  +       L+   +       H P VI+V GVNG GKTT I
Sbjct: 85  DLKRRVKESKTTDPAAVKGLLADALAELLRPLEKALVIGEHTPTVIMVAGVNGAGKTTSI 144

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+K ++  G  V+LAA DTFR+AA +QL +WADR + + V S+ G D AA++++A   
Sbjct: 145 GKLTKHLATEGASVLLAAADTFRAAAREQLGVWADRNTVEIV-SQEGGDPAAVSFDAVTA 203

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +A+  DV+++DTAGRL     LM  + K+ RV+ + D  APH VL V+D  TGQNAL Q
Sbjct: 204 GKARGKDVVLVDTAGRLPTQLHLMEELKKIRRVVTKADATAPHEVLLVIDGNTGQNALAQ 263

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           V  F      TGL++TK+DGTA+GG L  I     IPVYF+GVGE + DLE F A++F+ 
Sbjct: 264 VRAFDDALQLTGLVVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKLEDLETFNAREFAQ 323

Query: 309 VIT 311
            + 
Sbjct: 324 ALL 326


>gi|294657854|ref|XP_460149.2| DEHA2E19404p [Debaryomyces hansenii CBS767]
 gi|199432996|emb|CAG88422.2| DEHA2E19404p [Debaryomyces hansenii]
          Length = 541

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/297 (28%), Positives = 135/297 (45%), Gaps = 32/297 (10%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK---DVSVQRVLYDVSELIHKMLMPLSK 101
           + +++ + L+ SD+ + +  K+ + +  K   +   + S       + +++   L  L  
Sbjct: 1   MIKDICNALLESDVNIKLVAKLRDNIKAKVKTQINDEESSTNKRKKLQKIVFDELCSLVD 60

Query: 102 PFNWDFSHRP-----------------------HVILVVGVNGVGKTTVIGKLSKKMSDA 138
                   +                        HVI+ VG+ G GKTT   KL+      
Sbjct: 61  SHEEPPKPKKLSQQQQKSKTLRGKKATKVTGESHVIMFVGLQGAGKTTSCTKLAVYYKKR 120

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G KV L   DTFR+ A DQLK  A ++S  +  S I +D   +AYE   + + +K D++I
Sbjct: 121 GYKVGLVCADTFRAGAFDQLKQNAIKSSIPYYGSYIETDPVKVAYEGVVKFKQEKFDIII 180

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DT+GR      L   + ++  ++       P   + V+D + GQ A  Q + F   +  
Sbjct: 181 VDTSGRHKQEQSLFNEMIQISEMI------VPTQTIMVMDGSIGQAAESQAKAFKESSQF 234

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             +I+TKMDG ARGGG I  V T K P+ F+G GE   DLE F    F + + G  D
Sbjct: 235 GSIILTKMDGHARGGGAISAVATTKTPIVFIGTGEHATDLEIFKPTSFISKLLGIGD 291


>gi|32266089|ref|NP_860121.1| signal recognition particle-docking GTPase FtsY [Helicobacter
           hepaticus ATCC 51449]
 gi|32262138|gb|AAP77187.1| signal recognition particle-docking GTPase FtsY [Helicobacter
           hepaticus ATCC 51449]
          Length = 293

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 105/294 (35%), Positives = 168/294 (57%), Gaps = 11/294 (3%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
              + T  K  + IT ++ S++ D   +EELE++LI  D+   + + ++E L +    + 
Sbjct: 3   SALSKTLQKTTQNITSLLGSKK-DKCAKEELEEILIECDLEYELIESLLENLPSYISRE- 60

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
                    +++ + K+L    +  N      +P V L+VGVNG GKTT I KL+     
Sbjct: 61  --------TLNKELLKLLDIKDQTSNLSNIPPKPLVTLIVGVNGAGKTTTIAKLAHLAQT 112

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KVMLAAGDTFR+AAI+QLK+W ++     + ++   D +A+A+++   A AK +D L
Sbjct: 113 QNKKVMLAAGDTFRAAAIEQLKLWGEKLQIPVIATQHMHDPSAVAFDSINSAIAKNIDEL 172

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
            IDTAGRLHN++ L   + K++RV ++     P     VLD T G +A+ QV +F     
Sbjct: 173 YIDTAGRLHNHTNLNNELLKIVRVSQKALGDKPLRKFLVLDGTQGSSAINQVRIFSKNID 232

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             G+I+TK+DGT++GG L  IV    IP+ ++G+GE  NDL PF +K++  ++ 
Sbjct: 233 FDGIIITKLDGTSKGGALFSIVNELNIPILYIGIGERENDLIPFDSKEYVRILL 286


>gi|322368150|ref|ZP_08042719.1| signal recognition 54 kDa protein [Haladaptatus paucihalophilus
           DX253]
 gi|320552166|gb|EFW93811.1| signal recognition 54 kDa protein [Haladaptatus paucihalophilus
           DX253]
          Length = 464

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 134/301 (44%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L+  +  +    R+ +     + +E++  L+++D+ V++   +   +  +   
Sbjct: 3   LDNLGSSLRGSLDKLSGKSRVSEDDVEEIVKEIQRSLLQADVDVSLVMDLSSSIKERALE 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++        D V  ++++ L+ L      +       IL+ G+ G GKTT   K++   
Sbjct: 63  EEPPGGTTARDHVLSIVYEELVGLVGEST-EIPLENQTILLAGLQGSGKTTTSAKMAWWF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  GL+  +   DTFR  A DQ K    R   DF       D   +A +  ++      D
Sbjct: 122 SKKGLRPAVIQTDTFRPGAYDQAKEMCSRAEVDFYGDPDNEDPVDIARKGLEETAD--AD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           + I+DTAGR      L+  I ++  V+       P   L VLDA  GQ A  Q + F   
Sbjct: 180 IHIVDTAGRHALEDDLIDEIEEIESVVD------PDRNLLVLDAAIGQGAKDQAQQFDES 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+++TK+DGTA+GGG +  V      + FLG GE + D+E F    F + + G  D
Sbjct: 234 IGIDGVVITKLDGTAKGGGALTAVNETDSSIAFLGSGETVQDVERFEPNGFISRLLGMGD 293

Query: 316 Y 316
            
Sbjct: 294 L 294


>gi|206890360|ref|YP_002249629.1| signal recognition particle-docking protein FtsY
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742298|gb|ACI21355.1| signal recognition particle-docking protein FtsY
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 301

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 125/303 (41%), Positives = 189/303 (62%), Gaps = 5/303 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + ++ KL +  + T   + E I  +I    ++D+   EE+E++LI SD+GV   ++I   
Sbjct: 1   MGFLDKLKEKLSKTKQHIVEKIEAVIPIGGKIDESTIEEIEEILISSDVGVKATEEITGI 60

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVI 128
           L  K     +     +  V   + + L+ L K     +  + P +ILVVGVNGVGKTT I
Sbjct: 61  LRRKIKEGGIKDASDVKIV---LKEELINLLKNNTSLNLKNTPSIILVVGVNGVGKTTTI 117

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL  K  + G  V+ AA DTFR+AAI+QL+IWA +  AD +  + G+D AA+A++A + 
Sbjct: 118 GKLGYKFVNEGKSVVFAAADTFRAAAIEQLEIWAKKVGADIIKHKSGADPAAIAFDALEH 177

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A+  D++IIDTAGRLH  S LM  + K+ RVLK+  P APH  L ++DATTGQNA+RQ
Sbjct: 178 AKAQNKDIVIIDTAGRLHTKSPLMEELRKINRVLKKSIPEAPHETLLIVDATTGQNAIRQ 237

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F+   G TG+++TK+DGTA+GG +  I     IP+  +G+GEGI+DL+ F+ ++F  
Sbjct: 238 ASLFNEAIGLTGVVVTKLDGTAKGGVIFAIKKEIGIPIKLIGIGEGIDDLKEFIPQEFVE 297

Query: 309 VIT 311
            + 
Sbjct: 298 ALF 300


>gi|33239462|ref|NP_874404.1| Signal recognition particle GTPase, FtsY [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33236987|gb|AAP99056.1| Signal recognition particle GTPase, FtsY [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 431

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 107/313 (34%), Positives = 176/313 (56%), Gaps = 5/313 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           + ++ + ++W+ +L +G   T       + D      L     +ELE LL+RSD+GV   
Sbjct: 116 ENISLDEINWLSRLQQGLEKTRKGFVTDLLDKFGDDPLTPETLDELETLLLRSDVGVDAT 175

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP----LSKPFNWDFSHRPHVILVVGV 119
            +I+  L  +   + +  +  L  + E + K++        K       +  ++ L+VGV
Sbjct: 176 DQIINALRKRLNEEVLDSKEGLRFLKEQLCKIVDQPIKNSGKTLLMPSENSLNIWLIVGV 235

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DA 178
           NGVGKTT +GKL+     +G   ++AA DTFR+AA++Q+K+W +R+    V +E  + D 
Sbjct: 236 NGVGKTTTLGKLANLALRSGFSALIAAADTFRAAAVEQVKVWGERSGVSVVANETPNADP 295

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+ ++A   A++KK+++L++DTAGRL   + LM  + K+ +++ RL P A    L VLD
Sbjct: 296 AAIVFDAIGAAKSKKIELLLVDTAGRLQTKNNLMEELTKVRKIIDRLAPEANVESLLVLD 355

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           AT GQN L Q   F   A  TG+++TK+DG+ARGG    +     +P+ F+G GEGI DL
Sbjct: 356 ATQGQNGLSQAMSFAKSANLTGVVITKLDGSARGGVAFAVSSQTNLPIRFIGAGEGIRDL 415

Query: 299 EPFVAKDFSAVIT 311
            PF + +F   + 
Sbjct: 416 RPFNSFEFVEALL 428


>gi|19074175|ref|NP_584781.1| SIGNAL RECOGNITION PARTICLE 54kDa SUBUNIT (SRP54) [Encephalitozoon
           cuniculi GB-M1]
 gi|19068817|emb|CAD25285.1| SIGNAL RECOGNITION PARTICLE 54kDa SUBUNIT (SRP54) [Encephalitozoon
           cuniculi GB-M1]
          Length = 466

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 147/300 (49%), Gaps = 16/300 (5%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTK----RYA 76
               +   +++++SS   D  +   + ++   LI S++       + +EL  K    + A
Sbjct: 5   LGRSITNTLSNLLSSPATDQHIETAIREICNSLILSNVNPRYVSDLRDELRAKLDPGKMA 64

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              +  R++ + V E +  +L P ++ +  +   R  V++ VG+ G GKTT I K +   
Sbjct: 65  PGFNKARMVQNAVYERLVDLLDPRTESYKIE-KGRTSVVVFVGLQGSGKTTSICKYANFY 123

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV +   DTFR+ A DQ++  A +    F  S        +A    ++ + ++ +
Sbjct: 124 KKKGYKVGIVCADTFRAGAFDQVRQNALKIKVPFFGSSEAD-PVKVASAGVERFRKERFE 182

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++++DT+GR    + L   +  +IR +       P S++ V+DA  GQ+A  Q   F   
Sbjct: 183 LILVDTSGRHTQETELFTEMKDIIREIS------PSSIVFVMDAGIGQSAEDQAMGFKRA 236

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +I+TK+DGT + GG I  V   K P+ F+G GEG++DLE F A+ F + + G  D
Sbjct: 237 VDVGSIILTKIDGTTKAGGAISSVAATKCPIEFVGTGEGMDDLEAFDARRFVSRMLGMGD 296


>gi|327311560|ref|YP_004338457.1| signal recognition particle-docking protein FtsY [Thermoproteus
           uzoniensis 768-20]
 gi|326948039|gb|AEA13145.1| signal recognition particle-docking protein FtsY [Thermoproteus
           uzoniensis 768-20]
          Length = 311

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/313 (28%), Positives = 153/313 (48%), Gaps = 19/313 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
              +L + F+     +   +  D +  R + + + E+L   L+ SD+ V VA  ++  L 
Sbjct: 1   MFERLRRTFSKFVDSIVSTVKEDALGEREVSE-LAEDLYLDLVESDVAVDVADALISALK 59

Query: 72  TKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVN 120
            K     V         V   V + +  ++  +                RP V++ +G N
Sbjct: 60  AKLVGAKVPRFGDREAAVRRAVYDALLSLVGDVQDADFESAVIEAAEQARPVVVMFLGPN 119

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT + K++      GL+ +LAA DTFR+ A +QL+    R     +  + GSD A+
Sbjct: 120 GYGKTTTLAKIAYLFKSRGLQSVLAAADTFRAGAREQLEEHGKRLGLRVIGGKYGSDPAS 179

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY+A + A++K + +++IDTAGR+H +  LM  + K+ RV++      PH  + V DA 
Sbjct: 180 VAYDAVQHARSKGIPLVLIDTAGRMHTDKNLMDELAKIQRVVE------PHFSVFVFDAQ 233

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            G  AL     +       G++ TK+D   +GG ++  + T K P+YFLGVG+   DL  
Sbjct: 234 LGNEALEIARYYSKHVSIDGMVATKVDSYPKGGSILTFLYTFKKPIYFLGVGQRYEDLVK 293

Query: 301 FVAKDFSAVITGC 313
           F  +++ A + G 
Sbjct: 294 FKKEEYIAQLIGL 306


>gi|50365053|ref|YP_053478.1| signal recognition particle, cell division protein GTPase
           [Mesoplasma florum L1]
 gi|50363609|gb|AAT75594.1| signal recognition particle, cell division protein GTPase
           [Mesoplasma florum L1]
          Length = 367

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 103/286 (36%), Positives = 168/286 (58%), Gaps = 8/286 (2%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           DD   +ELE++LI++D+G+ +  KI   +  ++             ++E I+ +    SK
Sbjct: 81  DDDFFDELEEVLIKTDMGMKMVLKISNNIR-RKVKNTSEANEFREILAEEIYDIYTDGSK 139

Query: 102 PFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
                     R +V +V+GVNG GKTT + K++   ++   KV++AA DTFR+ AI+QL+
Sbjct: 140 KVEELNFEDGRLNVFMVIGVNGTGKTTSLSKIANYYAEQNKKVLIAAADTFRAGAIEQLE 199

Query: 160 IWAD---RTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            W D       D V  +    D A++ ++A ++A+A+  D+L+IDTAGRL N   LM  +
Sbjct: 200 EWVDKRLDNKVDLVKGKKQNQDPASVVFDALEKAKAENYDLLLIDTAGRLQNKINLMKEL 259

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            KM +++ + D  APH +L V+DATTGQN + Q + F+ VA  TG+++TKMDGT++GG  
Sbjct: 260 EKMYQIVHKFDKKAPHELLLVIDATTGQNGVMQAQEFNEVADVTGIVLTKMDGTSKGGIA 319

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS-AVITGCLDYGEEK 320
           + I     IPV  +GVGE ++D+E F    +  +++ G ++  EE 
Sbjct: 320 LSIKDQLNIPVKLVGVGEQVDDIEKFDVDQYVYSLVVGFMEDKEED 365


>gi|330443811|ref|YP_004376797.1| signal recognition particle-docking protein FtsY [Chlamydophila
           pecorum E58]
 gi|328806921|gb|AEB41094.1| signal recognition particle-docking protein FtsY [Chlamydophila
           pecorum E58]
          Length = 286

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 154/284 (54%), Gaps = 6/284 (2%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
               I  ++  + L   + E  E L   +D G  + +++   L   +     +++ ++  
Sbjct: 5   FSNKICSLL-KKNLSVDLLEYAEKLFYEADFGSELTEELCSRLRKAKNPDKATIKELIIA 63

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
              L+ + L  L  P +   S  P V L++G NG GKTT + KL+        KV++ A 
Sbjct: 64  ---LLRETLQQL--PLSRPVSSSPQVFLILGSNGSGKTTTVAKLAHFYQKQSQKVLIVAT 118

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+A IDQ++ WA++ +  FV  + G D AA+AY+  + A A+  D +IIDT+GRLH 
Sbjct: 119 DTFRAAGIDQMRCWAEKLNCGFVSGKSGGDPAAIAYDGIQAAIARDCDKVIIDTSGRLHT 178

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           ++ LM  + K++ V  +  P APH +L  LDAT G N L Q + F ++A  +G+I+TK D
Sbjct: 179 HTNLMKELSKIVTVCNKALPGAPHEILMTLDATLGGNTLEQTQAFLSIAPVSGIILTKAD 238

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G+A+GG L  I    KIP  F+G GE + D + F  + F   + 
Sbjct: 239 GSAKGGTLFRIAKCLKIPTNFIGYGESMEDFQEFQLELFLENLF 282


>gi|283956118|ref|ZP_06373605.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792438|gb|EFC31220.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 445

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/300 (28%), Positives = 144/300 (48%), Gaps = 9/300 (3%)

Query: 21  FASTSLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           F   S   K  I  +  +   +      E L+  L+++D+   V ++++  +        
Sbjct: 2   FELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHKVTKELLTSIEEDVKQNG 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +  ++ L  +   +  +L    K   + F S  P V+L+ G+ G GKTT   KL+  +  
Sbjct: 62  IGQKQFLNAIKVNLENILSVNGKNQGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKL 121

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++AA D  R AA++QL+   +    +    E   D   +A EA K+A++  VDVL
Sbjct: 122 RNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEKDPIRVAKEALKKAESSMVDVL 181

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  +  LM  +  +  VL       P  +  V DA +GQ+ ++    F+ V G
Sbjct: 182 LVDTAGRLAIDETLMNELKAVKDVLN------PDEIFYVADAMSGQDGVKTAASFNEVLG 235

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            +G+I++K D   +GG  + I     IP+ F+GVGE + DLE F+     + I G  D  
Sbjct: 236 ISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADLEVFIPDRIVSRIMGEGDLA 295


>gi|288575011|ref|ZP_06393368.1| signal recognition particle-docking protein FtsY [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570752|gb|EFC92309.1| signal recognition particle-docking protein FtsY [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 311

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 175/312 (56%), Gaps = 4/312 (1%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +++ + +    A+   K  EG+  + S + LDD   EEL D LI  D+GV +++++ EEL
Sbjct: 1   MAFFKGIASKLANVREKWSEGVASLFSGK-LDDEFWEELTDRLIAGDVGVELSEELAEEL 59

Query: 71  LTKRYAKDV-SVQRVLYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                 + +   + +L    E++   L  +              ++++VGVNG GKTT  
Sbjct: 60  KETSRREGIREPEALLIRFKEILSSRLESVPMMGKPLSPGSGLSIVVMVGVNGSGKTTTT 119

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++++   G KV+LAA DTFR+AA +QL +W +R     +    GSDA A+AY+A   
Sbjct: 120 GKLAQQLVSQGNKVVLAAADTFRAAASEQLHVWGERIGIRVISQHQGSDAGAVAYDAINA 179

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A   DV+I+DTAGRL     LM  + K+ RV+ +  P      L VLDA  GQNA RQ
Sbjct: 180 AKASGADVVIVDTAGRLQAKHNLMEELRKVYRVITKEVPAERIESLLVLDAVMGQNAFRQ 239

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            E+F+ V   TG+++ K D TA+GG ++ I    K+P+ ++G+GE I DL PFV  +F  
Sbjct: 240 AEVFNEVTPLTGVVLAKYDNTAKGGIVLAIADKLKLPIRYVGLGEAIEDLAPFVPSEFVD 299

Query: 309 VITGCLDY-GEE 319
            +    D  GEE
Sbjct: 300 ALLRSSDRSGEE 311


>gi|14601593|ref|NP_148133.1| signal recognition 54 kDa protein [Aeropyrum pernix K1]
 gi|12230645|sp|Q9YB62|SRP54_AERPE RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|5105423|dbj|BAA80736.1| signal recognition 54 kDa protein [Aeropyrum pernix K1]
          Length = 441

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 129/279 (46%), Gaps = 11/279 (3%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLM 97
           D   ++L+  LI++D+ V +   +   +  +   ++          ++  V E + K+  
Sbjct: 24  DAFVKDLQRELIKADVNVKLVLNVTRRIKERALKEEPPPGVTRRDWMIKIVYEELVKLFG 83

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
              +P   D    P ++L+VGV G GKTT  GKL+      G KV L + DT R  A +Q
Sbjct: 84  GDQEP-QVDPPKTPWIVLLVGVQGSGKTTTAGKLAYYYVRRGYKVGLVSSDTHRPGAYEQ 142

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LK  A+   A F     G   A +A    +   ++  +++I+DTAGR  +          
Sbjct: 143 LKRLAEEAGAMFYGEREGD-PAEIARRGLEDLLSRGAEIVIVDTAGRHGH----GEEARL 197

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +  +        P  V  V+DA+ GQ A+   E FH       +I+TKMDGTARGGG + 
Sbjct: 198 LDEMKAIASKVRPDEVALVIDASIGQKAMGLAERFHKSTPIGSIIVTKMDGTARGGGALT 257

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
                   + F+G GE + +LEPF  + F A I G  D 
Sbjct: 258 AAAVTGARIKFIGTGETLGELEPFAPRRFVARILGMGDL 296


>gi|312221554|emb|CBY01494.1| similar to signal recognition particle 54 kda protein
           [Leptosphaeria maculans]
          Length = 533

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLT---- 72
                 ++   +TD+  S  LD    D + +E+ + L+ +D+ V +   + + +      
Sbjct: 3   LQDLGRRINAAVTDLTRSPNLDEKAFDAMVKEISNALVEADVNVKLVMNLRQSIKRTVDF 62

Query: 73  KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K  A  V+ +R++   V + + K++ P ++PF      + +VI+ VG+ G GKTT   KL
Sbjct: 63  KHLAPGVNKKRLIQKAVYDELVKLVDPHAEPFK-PRKGKSNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D   +A E  ++ + 
Sbjct: 122 ARWYQARGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSHTQTDPVVVAGEGVEKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ +++I+DT+GR      L   + ++   ++      P   + VLD T GQ A  Q   
Sbjct: 182 ERFEIIIVDTSGRHRQEKDLFDEMVQIQNAVQ------PDQTIMVLDGTIGQAAESQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +++TK DG A GGG I  V     P+ F+G GE + DLE F  + F + + 
Sbjct: 236 FKEAADFGAIVITKTDGAAAGGGAISAVAATHTPIVFIGNGEHLLDLERFAPQAFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|206900990|ref|YP_002250665.1| signal recognition particle-docking protein FtsY [Dictyoglomus
           thermophilum H-6-12]
 gi|206740093|gb|ACI19151.1| signal recognition particle-docking protein FtsY [Dictyoglomus
           thermophilum H-6-12]
          Length = 297

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 103/298 (34%), Positives = 173/298 (58%), Gaps = 9/298 (3%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S+  +L K          E + +I+   R+DD + +ELE   I+SD+G+ +  +I+ E+
Sbjct: 1   MSFWDRLPK-----IKGFAERLQNILKFSRVDDNLLDELEMEFIQSDLGLELTNEIISEI 55

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             ++      ++  L++    +  +L  L    +     R +V++ +GVNG GKT+ +GK
Sbjct: 56  RKRKITNTPELRDFLFNY---LKAILENLDYRLDL-LEDRLNVVVFIGVNGTGKTSTVGK 111

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            +  +   G   ++AA DTFR+AAIDQ+KIW +R   + +  + G+D  A+ + A + A+
Sbjct: 112 FAYYLKGLGYSPIIAAADTFRAAAIDQVKIWGERVGVEVIAQKEGADPGAVVFNAIEAAR 171

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  +VL++DTAGR+H  S L+  + K+ RV++R   + P   L V+DAT GQN +RQVE
Sbjct: 172 ARNKNVLLVDTAGRMHTKSNLIEELKKINRVVERTLGYGPSENLIVIDATLGQNVIRQVE 231

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            FH     TG ++TK+DGTA+GG +  +V    IPV  + +GEG+ DL+ F   +F  
Sbjct: 232 TFHNAVNLTGAVLTKLDGTAKGGVIFNVVRRFNIPVKLVTIGEGVEDLKVFDPNEFIE 289


>gi|124809679|ref|XP_001348651.1| signal recognition particle SRP54, putative [Plasmodium falciparum
           3D7]
 gi|23497549|gb|AAN37090.1| signal recognition particle SRP54, putative [Plasmodium falciparum
           3D7]
 gi|326787503|gb|AEA07718.1| signal recognition particle 54 [Plasmodium falciparum]
          Length = 500

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 130/305 (42%), Gaps = 18/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLT---- 72
                 ++      + +S   DD V EE    +   LI SDI V+  + I   +      
Sbjct: 3   LTELGTQITNAFRKLQTSTLADDVVIEECLKEIIRALILSDINVSYLKDIKSNIKNNIEK 62

Query: 73  --KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
               Y  +       Y V ELI   L+   K        + +VIL VG+ G GKTT   K
Sbjct: 63  NIDIYGNNKKKLVQKYVVEELIK--LLEGKKEGYNPVKGKRNVILFVGLQGSGKTTTCTK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A +      
Sbjct: 121 YAHYYQKKGFKTALVCADTFRAGAFDQLKQNAAKVKIPFYGSYSEVDPVKIATDGVNAFL 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K D++I+D++GR    + L   +      ++  +   P  ++ V+D+  GQ+   Q  
Sbjct: 181 KDKYDLIIVDSSGRHKQENELFEEM------IQVENSIQPEEIIFVIDSHIGQSCHDQAM 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TK+DG A+GGG +  V     P+ F+G GE +ND E F AK F + +
Sbjct: 235 AFKNSVSLGSIIITKIDGHAKGGGALSAVAATGCPITFIGTGEHVNDFEKFEAKSFVSRL 294

Query: 311 TGCLD 315
            G  D
Sbjct: 295 LGLGD 299


>gi|224419142|ref|ZP_03657148.1| signal recognition particle protein [Helicobacter canadensis MIT
           98-5491]
 gi|253828077|ref|ZP_04870962.1| signal recognition particle protein ffh [Helicobacter canadensis
           MIT 98-5491]
 gi|313142648|ref|ZP_07804841.1| signal recognition particle protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511483|gb|EES90142.1| signal recognition particle protein ffh [Helicobacter canadensis
           MIT 98-5491]
 gi|313131679|gb|EFR49296.1| signal recognition particle protein [Helicobacter canadensis MIT
           98-5491]
          Length = 446

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 146/294 (49%), Gaps = 13/294 (4%)

Query: 28  LKEGITDIISSRRLDDGVR------EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           + E   + I+  R  D  +      +EL+  L++SD+   V + ++EE+  K     +  
Sbjct: 5   ITESFQNAINKIRFQDDEKALKRAIDELKKTLLKSDVHYKVLKHLLEEVEQKTKLAGIGK 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           +  L  + E ++ +L           S  P ++L+ G+ G GKTT   KL+  +     K
Sbjct: 65  ESFLNALKESLNHILTAPGNYGFIFASKPPTIVLMAGLQGSGKTTTTAKLANYLKTRQKK 124

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+LAA D  R AA++QL+  + +   DF   E       +A  A ++A A   DVL++D+
Sbjct: 125 VLLAACDLQRLAAVEQLRQLSHQVEVDFFY-EENKTPVEIAKAAKEKAIAGLYDVLLVDS 183

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL  +  LM  +  +   +       P+ +  V+D+ +GQ+ ++    FH     +G+
Sbjct: 184 AGRLAIDEALMQELQAIKEAIN------PNEIFYVVDSLSGQDGVKSAATFHEKMNLSGV 237

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I++K DG ++GG  + I     IP+ F+GVGE I DLE F+ +   + + G  D
Sbjct: 238 ILSKFDGDSKGGIALSIAQLLGIPLRFIGVGEKIPDLEVFIPERIVSRLMGAGD 291


>gi|303389022|ref|XP_003072744.1| signal recognition particle protein Srp54 [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303301886|gb|ADM11384.1| signal recognition particle protein Srp54 [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 466

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 145/300 (48%), Gaps = 16/300 (5%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQKIVEELLTKR----YA 76
               +   +++++ SR  D  +   ++++   LI S++       +  EL  +      A
Sbjct: 5   LGKSITNTLSNLLRSRATDQDIEAAIKEICHSLILSNVNPRYVSNLRNELKARLDPSGMA 64

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             ++  RV+ + V E +  +L P +K +  +   +  +I+ VG+ G GKTT I K +   
Sbjct: 65  PGLNKARVVQNAVYEKLVDLLDPKAKGYKIE-KGKTSIIVFVGLQGSGKTTSICKYANFY 123

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV +   DTFR+ A DQ++  A +    F  S        +A    ++ + ++ +
Sbjct: 124 KKKGFKVGIVCADTFRAGAFDQVRQNALKIKVPFFGSSEAD-PVKVAGAGVERFRRERFE 182

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+++DT+GR    S L   +  ++R +       P S++ V+DA  GQ+A  Q   F   
Sbjct: 183 VILVDTSGRHTQESELFVEMKDIMREV------RPDSIVFVMDAGIGQSAEDQAIGFKKA 236

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                +I+TK+DGT + GG I  V     P+ F+G GEG+ DLE F A+ F + + G  D
Sbjct: 237 VNVGSIILTKIDGTNKAGGAISSVAATGCPIEFVGNGEGMEDLEVFDARRFVSRMLGMGD 296


>gi|312136391|ref|YP_004003728.1| signal recognition particle-docking protein ftsy [Methanothermus
           fervidus DSM 2088]
 gi|311224110|gb|ADP76966.1| signal recognition particle-docking protein FtsY [Methanothermus
           fervidus DSM 2088]
          Length = 321

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 103/326 (31%), Positives = 152/326 (46%), Gaps = 33/326 (10%)

Query: 13  WIRKLTKGFASTSLKL-----------------KEGITDIISSRRLDDGVREELEDLLIR 55
               L         K+                 K GI   I  + + +   E++   L  
Sbjct: 1   MFESLKNKLNKAVKKITKSVSKKEIEKGKVEENKSGIFSFIKEKTISEDDIEDVLWELQL 60

Query: 56  ----SDIGVAVAQKIVEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPLSKPFN----W 105
                D+ + VA+KI E +  +   K V  S     Y  + L + +L  L    N     
Sbjct: 61  ELLEGDVALEVAEKITESVKKELVGKKVKRSTDIDKYTRNALKNAILEILKTDSNVEDLL 120

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               +P VIL VGVNG GKTT I KL+K   + GL  ++AA DTFR+ AI+Q+    ++ 
Sbjct: 121 KIKKKPFVILFVGVNGTGKTTTIAKLAKYFMEKGLVPVIAAADTFRAGAIEQITKHGEKL 180

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +  + GSD AA+AY+A   A++K  DV++IDTAGR+  N  LM  + K+ RV+   
Sbjct: 181 GVKVIKHKKGSDPAAVAYDAVNHAKSKNKDVVLIDTAGRMQTNMNLMEEMAKIKRVVN-- 238

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  ++ V DA TG +A+ Q +MF    G  G+I+TK D   RGG  I I      P
Sbjct: 239 ----PDFIIFVGDALTGNDAVEQAKMFDEKIGIDGVILTKADADTRGGAAISISYVIGKP 294

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + FLG+G+  +DL  F  +     + 
Sbjct: 295 ILFLGIGQNYDDLIEFKPEWVVKQLF 320


>gi|159905503|ref|YP_001549165.1| signal recognition particle protein Srp54 [Methanococcus
           maripaludis C6]
 gi|238686963|sp|A9A9B0|SRP54_METM6 RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|159886996|gb|ABX01933.1| GTP-binding signal recognition particle SRP54 G- domain
           [Methanococcus maripaludis C6]
          Length = 450

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 151/308 (49%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVA----QKIVEELLT 72
                  L E +  I       ++L   V ++++  LI+SD+ V +     ++I  + + 
Sbjct: 2   LDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIE 61

Query: 73  KRYAKDVSVQRV-LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K +S +   +  V + + K+L    +    D S +  VIL++G+ G GKTT   KL
Sbjct: 62  EAPPKGLSKKEHIVKIVYDELVKLLGETIQKLELDASKK-SVILLIGIQGSGKTTSAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQAQ 190
           ++ +   GL+  L A D +R AA  QLK  +++ +      E  +     +  E  ++ +
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVDITKEGMEKLK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             KVDV+IIDTAGR      L+A + +M       D   P+ ++ V+D T GQ A  Q +
Sbjct: 181 --KVDVIIIDTAGRHKEEEGLLAEMKEMK------DLTNPNEIILVIDGTLGQQAKNQAK 232

Query: 251 MFHAVAGTTGLIM-TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            F       G I+ TK+DG+A+GGG +  V     P+ F+G GEG+++LE F  K F + 
Sbjct: 233 AFKDSVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISR 292

Query: 310 ITGCLDYG 317
           I G  D  
Sbjct: 293 ILGFGDLD 300


>gi|48477967|ref|YP_023673.1| signal recognition particle protein Srp54 [Picrophilus torridus DSM
           9790]
 gi|48430615|gb|AAT43480.1| signal recognition particle protein Srp54 [Picrophilus torridus DSM
           9790]
          Length = 456

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 140/306 (45%), Gaps = 22/306 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + S  LK+    I  S  +D    +E    ++  L+++D+ V +   +   L  +   
Sbjct: 3   LENLSSSLKDVFKKISGSSYIDKETIKEVSKDIQRALLKADVNVKLVISLTNRLQERAAT 62

Query: 77  KDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +           +L  + E +  +L   S+        +P  I++VG+ G GKTT  GKL
Sbjct: 63  EKPPAGMSEQDFILKIIYEELLSILGEESR-----IELKPQTIMLVGLYGNGKTTTAGKL 117

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     GL V L A D  R  A +QL+  + + ++ F   +   D   +      +   
Sbjct: 118 ARFFIKKGLSVGLIAADVHRPGAYEQLEQISKQVNSLFYGEKNEKDPVKIIKNGLDRLGD 177

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            K  V IIDT+GR   +  L+  I ++   +K      P  VL V+DAT GQ    Q ++
Sbjct: 178 AK--VKIIDTSGRDSLDDELIDEIKRIKNEIK------PDEVLYVVDATLGQQVGPQAKV 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            +     +G+I+TKMDGT +GGG +  V   K PVYF+G GE + D E F  + F + + 
Sbjct: 230 LNDAVSISGVIITKMDGTGKGGGALSAVAEIKSPVYFIGTGEHMEDFEVFNPRKFLSRLL 289

Query: 312 GCLDYG 317
           G  D  
Sbjct: 290 GMGDID 295


>gi|308806441|ref|XP_003080532.1| chloroplast SRP receptor cpFtsY precursor (ISS) [Ostreococcus
           tauri]
 gi|116058992|emb|CAL54699.1| chloroplast SRP receptor cpFtsY precursor (ISS) [Ostreococcus
           tauri]
          Length = 354

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 98/260 (37%), Positives = 148/260 (56%), Gaps = 5/260 (1%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR---PH 112
           D G   + ++ + +  +    +      +   +   I  +L           + R   P 
Sbjct: 91  DFGPKASARVTDGVRARVERGECETGEDVRRALKASIVDVLRSAGDSTTIGLNEREGEPS 150

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VI+VVGVNG GKTT +GKLS + +++G KVM+  GDTFR+AA +QL  WA+RT A    S
Sbjct: 151 VIMVVGVNGGGKTTTLGKLSHRFAESGAKVMMVPGDTFRAAAAEQLATWAERTGAVMSDS 210

Query: 173 EIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              +   A+ ++A  +A A+  +D+++ DT+GRLHNN+ LM  +  + + + +    APH
Sbjct: 211 PPNTKPGAVCFKAVDEACARGDIDIVLADTSGRLHNNTQLMDELVGVRKSISKRMEGAPH 270

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            VL VLD TTG N L Q  +F    G TG+I+TK+DGTARGG ++ +V    IPV F+GV
Sbjct: 271 EVLLVLDGTTGLNMLNQARVFGEAVGVTGIILTKLDGTARGGAVVSVVDELGIPVKFIGV 330

Query: 292 GEGINDLEPFVAKDFSAVIT 311
           GE + DL+ F A+ F   + 
Sbjct: 331 GEAMEDLQSFEAESFVDALF 350


>gi|283953925|ref|ZP_06371454.1| LOW QUALITY PROTEIN: signal recognition particle protein
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794530|gb|EFC33270.1| LOW QUALITY PROTEIN: signal recognition particle protein
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 445

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 142/300 (47%), Gaps = 9/300 (3%)

Query: 21  FASTSLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           F   S   K  I  +  +   +      E L+  L+++D+   V ++++  +        
Sbjct: 2   FELISESFKSAINKLRFVDDEKALKNALETLKKTLLKADVHHKVTKELLTLIEEDVKQNG 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +  Q+ L  +   +  +L    K   + F S  P V+L+ G+ G GKTT   KL+  +  
Sbjct: 62  IGQQQFLNAIKVNLENILSINGKNQGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKL 121

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++AA D  R AA++QL+        +    E   D   +A EA ++A++  VDVL
Sbjct: 122 RNKKVLVAACDLQRLAAVEQLRQLCQANGIELFFIENEKDPIRVAKEALEKAKSSMVDVL 181

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  +  LM  +  +  VL       P  +  V DA +GQ+ ++    F+   G
Sbjct: 182 LVDTAGRLAIDDTLMNELKAVKDVLN------PDEIFYVADAMSGQDGVKTAANFNEALG 235

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            +G+I++K D   +GG  + I     IP+ F+GVGE + DLE F+     + I G  D  
Sbjct: 236 ISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADLEVFIPDRIVSRIMGEGDLA 295


>gi|167045193|gb|ABZ09853.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine crenarchaeote HF4000_APKG8O8]
          Length = 494

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 92/310 (29%), Positives = 156/310 (50%), Gaps = 20/310 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              KL+  F++ +  L E     +    +D+ +  +LE  L+ SD+   V   I  +L  
Sbjct: 1   MFEKLSNAFSNVAKSLGE---KELKENDIDE-MLTQLEISLLESDVATEVIDNIKSDLKK 56

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPL-SKPFNWDF---------SHRPHVILVVGVNGV 122
           K     V+ + +   V + + + +  +  +  ++D             P++IL VG+NG 
Sbjct: 57  KLIGVKVNKKEIEDFVRKSLIENISSMFDEAGSFDLISDIKLKTDPQDPYLILFVGINGT 116

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I K++  +    + +++AA DTFR+ AI+QL+   D+ +   V    GSD AA+A
Sbjct: 117 GKTTTIAKIASLLQKNKISLVVAASDTFRAGAIEQLRGHTDKLNLKLVAQNYGSDPAAVA 176

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A   A++ KVD ++ID+AGR+  N  LM  I K+ +V+       P   + V D+  G
Sbjct: 177 HDALLYAKSHKVDCVLIDSAGRMQTNKNLMEQITKISKVVN------PDLKIFVGDSLAG 230

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            + + Q   F+      G ++TK D  +RGG  + IV   K PV ++G G+G +DLE F 
Sbjct: 231 NDTVSQAREFYKHTNFDGAVLTKSDADSRGGAALSIVAVTKKPVVYIGTGQGYDDLELFN 290

Query: 303 AKDFSAVITG 312
              F   + G
Sbjct: 291 KDTFLEKVFG 300


>gi|169624365|ref|XP_001805588.1| hypothetical protein SNOG_15441 [Phaeosphaeria nodorum SN15]
 gi|160705155|gb|EAT77106.2| hypothetical protein SNOG_15441 [Phaeosphaeria nodorum SN15]
          Length = 533

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 87/304 (28%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLT---- 72
                 ++   + D+  S  LD+   E    E+ + L+ +D+ V +   + + +      
Sbjct: 3   LQDLGRRINAAVNDLTRSPNLDEKAFEAMVKEISNALVEADVNVKLVMNLRQSIKRSVDF 62

Query: 73  KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K  A +V+ +RV+   V + + K++ P ++PF      + +VI+ VG+ G GKTT   KL
Sbjct: 63  KHLAPNVNKKRVIQKAVFDELVKLVDPHAEPFKPK-KGKSNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D   +A E  ++ + 
Sbjct: 122 ARWYQARGFKACLVCADTFRAGAFDQLKQNATKAKIPYFGSHTQTDPVIVAAEGVEKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ +++I+DT+GR      L   + ++   ++      P   + VLDAT GQ A  Q   
Sbjct: 182 ERFEIIIVDTSGRHRQEKDLFDEMVQIQNAVQ------PDQTIMVLDATIGQAAEGQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +++TK DG A GGG I  V     P+ F+G GE + DLE F  + F + + 
Sbjct: 236 FKDAADFGAIVITKTDGAAAGGGAISAVAATHTPIVFIGNGEHMLDLERFSPEPFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|296274038|ref|YP_003656669.1| signal recognition particle protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296098212|gb|ADG94162.1| signal recognition particle protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 451

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 134/294 (45%), Gaps = 12/294 (4%)

Query: 28  LKEGITDIISSRRLDDGVRE------ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           +   I   ++  R  D          EL   L+++D+     + ++  +  +     +  
Sbjct: 5   ITGSIKSAVNKVRFKDDAASLKKATTELRKALLKADVHHKTTKDLIYNVELRTKELGIGQ 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
              L  + E +  +L           +  P  IL+ G+ G GKTT  GKL+  +     K
Sbjct: 65  NAFLKALQENLTSILTAEGNQGFVFSNTPPTTILMTGLQGSGKTTTTGKLANYLKQRKKK 124

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V++AA D  R AA++QLK    +   D    +I  D   +A  A ++A+ +  DVL++DT
Sbjct: 125 VLIAACDLQRLAAVEQLKQICAQIEVDLYFDDIEKDPVKIAKAAQEKAKKELYDVLLVDT 184

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRL  ++ LM  +GK+   L       P  +  V D+ TG +A +    F    G  G+
Sbjct: 185 AGRLAIDTELMNQLGKVKDALN------PDEIFYVADSLTGHDATKTASSFKEQIGIDGV 238

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I++K DG  +GG  I +     +P+ F+G GE + DLE F+     + + G  D
Sbjct: 239 ILSKFDGDTKGGVAISLAEQVGVPLRFVGTGEKMPDLEVFIPDRIVSRLMGAGD 292


>gi|257125121|ref|YP_003163235.1| signal recognition particle-docking protein FtsY [Leptotrichia
           buccalis C-1013-b]
 gi|257049060|gb|ACV38244.1| signal recognition particle-docking protein FtsY [Leptotrichia
           buccalis C-1013-b]
          Length = 396

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 116/294 (39%), Positives = 178/294 (60%), Gaps = 3/294 (1%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
            A+        + +++  + ++D + EELE+LLI+SDIG+ +  ++VEEL +    K + 
Sbjct: 102 LATPKKGFFGKLKEMLLGKTINDDLYEELEELLIQSDIGMNMTMQLVEELESSVSRKKLK 161

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSD 137
               +YD  + + K  +  +   N     +    +++LVVGVNGVGKTT IGK++KK+ D
Sbjct: 162 TSEQIYDELKELLKAKLIYNDEENTKLKLKNGKLNILLVVGVNGVGKTTSIGKIAKKLKD 221

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           +G KV++ AGDTFR+AAI+Q++ W  RT  + V    GSD AA+ ++  K A+ +  DV 
Sbjct: 222 SGKKVIIGAGDTFRAAAIEQVEEWGKRTGVEVVKQAHGSDPAAVIFDTVKTAKNRGFDVA 281

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           I+DTAGRLHN   LM  + K+ ++++          L V+D+TTGQN L Q  +F+ +  
Sbjct: 282 ILDTAGRLHNKRDLMKELEKINKIIREQSGETDFETLLVIDSTTGQNGLEQARIFNEIVD 341

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            TG+I+TK DGTA+GG + PI    K P+ F+GVGEGI DL  F  K+F   + 
Sbjct: 342 LTGIILTKFDGTAKGGIIFPITSELKKPIKFIGVGEGIEDLREFDKKEFVEAMF 395


>gi|331703488|ref|YP_004400175.1| cell division protein FtsY [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802043|emb|CBW54197.1| Cell division protein FtsY [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 412

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 182/306 (59%), Gaps = 10/306 (3%)

Query: 23  STSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
            ++    + I  +    ++ DD   EELED+LI++D+G+ +  K V  L+ K+  +D S 
Sbjct: 105 KSAFNFSKDIKKLSKKYKQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSF 163

Query: 82  QRVLYDVSELIHKMLMP---LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +   + E +++        +K +  DF  +R ++ ++VGVNG GKTT + K++   ++
Sbjct: 164 ENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE 223

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKK 193
            G KV++AA DTFR+ A  QL+ W         D V  +++ +D A++ ++A K+A+ + 
Sbjct: 224 LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQN 283

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+L+IDTAGRL N + LMA + KM +++++++  APH VL V+DATTGQN + Q E F 
Sbjct: 284 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFS 343

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            VA  +G+I+TKMD T++GG  + I     IP+  +GVGE ++DL  F    +   ++  
Sbjct: 344 KVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSSG 403

Query: 314 LDYGEE 319
              G+E
Sbjct: 404 FMQGDE 409


>gi|182417262|ref|ZP_02948615.1| signal recognition particle-docking protein FtsY [Clostridium
           butyricum 5521]
 gi|237668131|ref|ZP_04528115.1| signal recognition particle-docking protein FtsY [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378908|gb|EDT76421.1| signal recognition particle-docking protein FtsY [Clostridium
           butyricum 5521]
 gi|237656479|gb|EEP54035.1| signal recognition particle-docking protein FtsY [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 302

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 185/302 (61%), Gaps = 5/302 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   KL  G   T   L + I +++  +  +D+ + EELE++LI SDIG+     I+E L
Sbjct: 4   NLFNKLKTGLTKTRDGLTDKINEVLKIAITIDEDLYEELEEILITSDIGMDTTIDIIERL 63

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             K   + ++  + +   + E+I  +L+  S   N +      V+L++GVNGVGKTT IG
Sbjct: 64  RNKIRKEKINDPQEVKPALKEVIRDILLEGSYEDNDEDKK---VMLIIGVNGVGKTTSIG 120

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++ K    G KV+LAA DTFR+AAIDQL++W+ R   D V  + GSD AA+ ++A +  
Sbjct: 121 KIAAKNKADGKKVLLAAADTFRAAAIDQLEVWSKRAEVDLVKHQEGSDPAAVVFDAIEAT 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+KVD+LI DTAGRLHN   LM  + K+ R++ R         L VLDATTGQNA+ Q 
Sbjct: 181 KARKVDLLICDTAGRLHNKKNLMNELEKINRIIDRELSDYKKETLLVLDATTGQNAVIQA 240

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F       G+I+TK+DGTA+GG +I I  +  IPV ++GVGEGI+DL+ F A+ F+  
Sbjct: 241 KQFMEACPIDGIILTKLDGTAKGGVVISIKQSLNIPVRYIGVGEGIDDLQKFDAEGFAEA 300

Query: 310 IT 311
           + 
Sbjct: 301 LI 302


>gi|14591436|ref|NP_143516.1| signal recognition particle protein [Pyrococcus horikoshii OT3]
 gi|3258098|dbj|BAA30781.1| 326aa long hypothetical signal recognition particle protein
           [Pyrococcus horikoshii OT3]
          Length = 326

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 88/263 (33%), Positives = 137/263 (52%), Gaps = 14/263 (5%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPLSK---PFNWDFSH 109
           + + V  ++ + +      K V +      + E      + ++L P  K         + 
Sbjct: 66  VALEVVDELKDRIKRNLVGKKVRIGTNKEKIIEEAVRKAVLEILTPEKKMDLLEEIKKAE 125

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P+VIL VG NG GKTT I KL+  +   G  V++AA DTFR+ AI+QL+  A +     
Sbjct: 126 KPYVILFVGFNGSGKTTTIAKLAHWLKKNGFSVVIAASDTFRAGAIEQLEEHAKKVGVKV 185

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +  + G+D AA+AY+A + A+A+ +DV++IDTAGR   N  LM  + K+ RV K      
Sbjct: 186 IKHKYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTK------ 239

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P+ V+ V D+  G   + Q   F+      G+I+TK+D  ARGG  + I      P+ F+
Sbjct: 240 PNLVIFVGDSLAGNAIVEQARQFNQAVKIDGVILTKLDADARGGAALSISHVINAPILFV 299

Query: 290 GVGEGINDLEPFVAKDFSAVITG 312
           G+G+G  DL PF  + F   I G
Sbjct: 300 GIGQGYEDLIPFDERWFVEKILG 322


>gi|261349709|ref|ZP_05975126.1| putative signal recognition particle protein [Methanobrevibacter
           smithii DSM 2374]
 gi|288861664|gb|EFC93962.1| putative signal recognition particle protein [Methanobrevibacter
           smithii DSM 2374]
          Length = 470

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 91/297 (30%), Positives = 154/297 (51%), Gaps = 19/297 (6%)

Query: 33  TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD----- 87
              IS + L+D + E LE  L+  D+ + VA  +V+ +      + +     + +     
Sbjct: 177 AKTISEKHLEDILWE-LEMGLLEGDVAMEVASAVVDSVKDDLVGRKIKRSNDITEYTYNA 235

Query: 88  VSELIHKMLMPLSKPFNWDFSHR-----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           +   + +++    K        +     P V++ VG+NG GKTT IGKL+      G   
Sbjct: 236 LRNAVAEIIDIPGKSMTEMIEAKKAQGEPLVVMFVGINGTGKTTTIGKLANYYLKKGYTP 295

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ++AA DTFR+ AI+Q+   AD+     +  + GSD AA+A++A + A+A+  ++++IDTA
Sbjct: 296 VIAAADTFRAGAIEQVNYHADKVGVKLIKHQKGSDPAAVAFDAVEHAKAQGKELVLIDTA 355

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GR+  N+ LM  + K+ RV K      P  V+ V DA TG +A +Q   F+      G+I
Sbjct: 356 GRMQTNTNLMDEMKKIKRVAK------PDLVVFVGDALTGNDATQQASKFNEAIDLDGVI 409

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319
           +TK D  ++GG  + I    K P+ FLG+G+G +D++ + A      +    + GEE
Sbjct: 410 LTKADADSKGGASLSIGYVIKKPILFLGMGQGYDDIKEYDADWMLNQLFS--ESGEE 464


>gi|298674678|ref|YP_003726428.1| signal recognition particle-docking protein FtsY [Methanohalobium
           evestigatum Z-7303]
 gi|298287666|gb|ADI73632.1| signal recognition particle-docking protein FtsY [Methanohalobium
           evestigatum Z-7303]
          Length = 359

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 151/284 (53%), Gaps = 14/284 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIH 93
           ++    + D + + LE  L+ +DI ++V++ IVE +  +    +          V + + 
Sbjct: 82  VLDEDDIQDTLWD-LEMGLLENDIALSVSEAIVESVKNELVGTRRRIGSDTGKIVEDALK 140

Query: 94  KMLMPLSKPFNWDF------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           K L  +     +DF      + +P  I+ VGVNG GKTT I K++  + +     ++AAG
Sbjct: 141 KSLYNIMSANTFDFDEYLKNAEKPVHIVFVGVNGTGKTTTIAKMANLLQNDNYSTVIAAG 200

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+ AIDQ++  A++ +   +  +   D AA+ Y+A + A+++ +DV++ DTAGR+H 
Sbjct: 201 DTFRAGAIDQIESHANKINTKLIKHQEMGDPAAVVYDAVQYAKSRSIDVVLSDTAGRMHT 260

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           N  LM+ + K+ RV       +P  ++ V +A  G +A+ + + F+      G I+TK D
Sbjct: 261 NVNLMSQLEKVCRV------SSPDLIIFVDEAVAGNDAVERAQQFNDNIPIDGSILTKAD 314

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             ++GG  I I      P+ +LG+G+G  DL+ F  + F   + 
Sbjct: 315 ADSKGGAAISIAYITGKPILYLGIGQGYEDLKKFDPQWFVDQLF 358


>gi|110669293|ref|YP_659104.1| signal recognition particle receptor SRalpha [Haloquadratum walsbyi
           DSM 16790]
 gi|109627040|emb|CAJ53516.1| signal recognition particle receptor SRalpha [Haloquadratum walsbyi
           DSM 16790]
          Length = 413

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 97/297 (32%), Positives = 150/297 (50%), Gaps = 17/297 (5%)

Query: 27  KLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAK-DVSV 81
           +LK           +++   EE    LE  L+ SD+ + VA++I+  + +K   +    V
Sbjct: 118 RLKRAAAFATGKIVIEEEDLEEPLWQLEMALLESDVEMQVAEEILGTIRSKMLGETRAQV 177

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKM 135
                 V E +   L  +     +DF  R      P  I+  GVNGVGKTT I KL + +
Sbjct: 178 NTTAALVEEALSDALYEVISVGQYDFDSRVESADSPVTIVFTGVNGVGKTTSIAKLVQYL 237

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              GL V++A GDT+R+ A +Q++  A       +  E G D AA+ Y+A + A+A  +D
Sbjct: 238 ESRGLSVVMANGDTYRAGANEQIREHAKTLDTKLIAHEQGGDPAAVLYDAVEYAEANDID 297

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V++ DTAGRLH ++ LMA + K+ RV+       P   L V +A  GQ+A+ + + F+  
Sbjct: 298 VVLGDTAGRLHTSNDLMAQLEKIDRVVN------PDMTLFVDEAVAGQDAVERAKQFNEA 351

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           A   G ++TK D  + GG  I I      P+ FLGVG+  +D+E F  K     + G
Sbjct: 352 AEIDGTVLTKADADSNGGAAISIAYVTGKPILFLGVGQEYDDIERFDPKSMVNQLLG 408


>gi|257075577|ref|ZP_05569938.1| signal recognition particle protein Srp54 [Ferroplasma acidarmanus
           fer1]
          Length = 457

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 143/303 (47%), Gaps = 16/303 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             + S  LK  +  I  S  +D      V +E++  L+++D+ V +  K+   +  +   
Sbjct: 3   LDNLSESLKSIMRKISGSSFIDKDTIKEVTKEIQRALLKADVNVKLVLKLTNTVQERALN 62

Query: 77  KDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           +          Y +  +  ++L  L    N+D   +P  I++VG+ G GKTT  GKL++ 
Sbjct: 63  EKPPAGMTAQDYIIRVIYEELLKILGTDSNFDL--KPQTIMLVGLYGNGKTTTAGKLARL 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               GL   L A D  R  A +QL+  +   +  F   +   +A  +     K+ +  K 
Sbjct: 121 FMKKGLSTGLIAADVHRPGAFEQLQQISGDVNCGFYGEKEEKNALKIVRNGIKELEDFK- 179

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
            + IIDT+GR   +  L+  + ++   +       P +VL V+DAT GQ A  Q +  H 
Sbjct: 180 -IKIIDTSGRDSLDQELIDEVHEIKEKIN------PDTVLFVIDATLGQQAGPQAKTLHD 232

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
                G+I+TKMDGT + GG +  V   + PVYF+G GE ++D++ F  K F + + G  
Sbjct: 233 AVNIDGVIITKMDGTGKAGGALSAVADIQSPVYFIGTGEHMDDIQIFNPKKFLSRLLGMG 292

Query: 315 DYG 317
           D  
Sbjct: 293 DID 295


>gi|124486291|ref|YP_001030907.1| signal recognition particle-docking protein FtsY
           [Methanocorpusculum labreanum Z]
 gi|124363832|gb|ABN07640.1| signal recognition particle-docking protein FtsY
           [Methanocorpusculum labreanum Z]
          Length = 337

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 98/317 (30%), Positives = 162/317 (51%), Gaps = 21/317 (6%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S Q    ++  ++ K+          L      ++S + +++ + E L+ +L+ SD+   
Sbjct: 34  SPQPEEKKAPGFLNKIK--------TLVVEHEFVLSEKDIEESLFE-LQMVLLESDVAYP 84

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSH-RPHVIL 115
           VA+ I E +  +       ++    DV        I ++L       ++  +H RP  IL
Sbjct: 85  VAEAITEHMKKELVGTHRKLRESADDVVTNALRHAIEEVLGEGFDLVSYVRTHDRPVKIL 144

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
             GVNG GKTT + K++  +   GL V++ AGDTFR+ AI+Q+++  DR     +  + G
Sbjct: 145 FTGVNGTGKTTSVAKIAHYLQSQGLSVVVGAGDTFRAGAIEQIRVHCDRLGIKLIAHQEG 204

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D +A+ Y+  + A+A K DV++ D+AGR HN   LM  + K+ RV+K      P  V  
Sbjct: 205 ADPSAVLYDTVEYAKAHKTDVVLADSAGRFHNRVNLMNQLEKIKRVMK------PDLVFY 258

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V +A  G +A+ + E F     T G+I+TK+D   +GG  I I  T   P+ FLGVG+G 
Sbjct: 259 VDEAVAGNDAVIRAEEFEKTVSTDGVILTKVDMDPKGGAAISIAYTIGKPLVFLGVGQGY 318

Query: 296 NDLEPFVAKDFSAVITG 312
           +D++PF        I G
Sbjct: 319 DDMKPFTPSLIIDEIFG 335


>gi|222445744|ref|ZP_03608259.1| hypothetical protein METSMIALI_01386 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435309|gb|EEE42474.1| hypothetical protein METSMIALI_01386 [Methanobrevibacter smithii
           DSM 2375]
          Length = 480

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 91/297 (30%), Positives = 154/297 (51%), Gaps = 19/297 (6%)

Query: 33  TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD----- 87
              IS + L+D + E LE  L+  D+ + VA  +V+ +      + +     + +     
Sbjct: 187 AKTISEKHLEDILWE-LEMGLLEGDVAMEVASAVVDSVKDDLVGRKIKRSNDITEYTYNA 245

Query: 88  VSELIHKMLMPLSKPFNWDFSHR-----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           +   + +++    K        +     P V++ VG+NG GKTT IGKL+      G   
Sbjct: 246 LRNAVAEIIDIPGKSMTEMIEAKKAQGEPLVVMFVGINGTGKTTTIGKLANYYLKKGYTP 305

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ++AA DTFR+ AI+Q+   AD+     +  + GSD AA+A++A + A+A+  ++++IDTA
Sbjct: 306 VIAAADTFRAGAIEQVNYHADKVGVKLIKHQKGSDPAAVAFDAVEHAKAQGKELVLIDTA 365

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GR+  N+ LM  + K+ RV K      P  V+ V DA TG +A +Q   F+      G+I
Sbjct: 366 GRMQTNTNLMDEMKKIKRVAK------PDLVVFVGDALTGNDATQQASKFNEAIDLDGVI 419

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319
           +TK D  ++GG  + I    K P+ FLG+G+G +D++ + A      +    + GEE
Sbjct: 420 LTKADADSKGGASLSIGYVIKKPILFLGMGQGYDDIKEYDADWMLNQLFS--ESGEE 474


>gi|145351050|ref|XP_001419900.1| IISP family transporter: Signal recognition particle 54 kDa protein
           (SRP54) [Ostreococcus lucimarinus CCE9901]
 gi|144580133|gb|ABO98193.1| IISP family transporter: Signal recognition particle 54 kDa protein
           (SRP54) [Ostreococcus lucimarinus CCE9901]
          Length = 513

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 87/316 (27%), Positives = 146/316 (46%), Gaps = 27/316 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVA----QKIVEELLT 72
                 K+   +  + +   +D+ + +    ++ + L+ SD+ V +     + IV E+  
Sbjct: 3   LNDLGNKIASALRSLNAHVVVDEELLDACLKDITNALLASDVAVPLVVRMKKNIVREVDL 62

Query: 73  KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSH------------RPHVILVVGV 119
              A  ++ ++VL   V + +  +L           S             + +V++ VG+
Sbjct: 63  DNMASGMNAKKVLERAVFKELTALLNGGGDASGTKTSGTKTSGTWTPKKGKRNVVMFVGL 122

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
            G GKTT   K +   +  G K  L   DTFR+ A DQLK  A +    F  S   SD A
Sbjct: 123 QGAGKTTTCTKFAHYYAKKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPA 182

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +A    K+ + +K D++I+DT+GR      L   + ++  V +      P   + V+D+
Sbjct: 183 TIAAAGVKRFEEEKSDLIIVDTSGRHKQEEALFEEMREIASVTE------PTMTIFVMDS 236

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           + GQ+A  Q + F +     G+IMTK+DG A+GGG I  V   K P+ F+G GE I +LE
Sbjct: 237 SIGQSASDQAKAFASTVDVGGVIMTKLDGHAKGGGAISAVSETKAPILFIGTGEHIGELE 296

Query: 300 PFVAKDFSAVITGCLD 315
            F    F + + G  D
Sbjct: 297 AFETTSFVSKLLGMGD 312


>gi|71894168|ref|YP_278276.1| cell division protein FtsY [Mycoplasma synoviae 53]
 gi|71850956|gb|AAZ43565.1| cell division protein FtsY [Mycoplasma synoviae 53]
          Length = 350

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 103/300 (34%), Positives = 173/300 (57%), Gaps = 8/300 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
            +K  KG +  S    + + ++ +    LD+   E LE++LI SDI V++   I+E++  
Sbjct: 41  FQKYEKGLSQASD-FGKQLLELQNKHLELDEEYFENLEEILIMSDINVSLVDVIIEQIKK 99

Query: 73  KRYAKDVSVQRVLYDVSE----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +     ++  +++ ++       I+     +    ++  +   +V  +VGVNG GKTT I
Sbjct: 100 EIRINKITDIKLIGEIIADKIFEIYTNNSIIDTSLDYKNNQT-NVFFIVGVNGSGKTTSI 158

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFK 187
            KL+        K+++AA DTFR+ A++QL+IW+++   D V   +  +D +++ YEA K
Sbjct: 159 AKLANYYKSLDKKILIAAADTFRAGAVEQLRIWSEKIGCDIVMPKKANADPSSVIYEAAK 218

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+ +  D+LIIDTAGRL N   LM  + KM  VLKR  P AP+  L VLDAT GQ+ + 
Sbjct: 219 KAKDEAYDLLIIDTAGRLQNKVNLMNELKKMYEVLKRFLPEAPNESLLVLDATNGQSGIM 278

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q ++F  V   +G+I+TKMDGT++GG ++ I     + V  +G+GE ++DL+ F  + F 
Sbjct: 279 QAKVFKEVVNLSGIILTKMDGTSKGGIVLSIKDELDLNVKLVGLGEKLDDLQEFDLELFI 338


>gi|187734932|ref|YP_001877044.1| signal recognition particle-docking protein FtsY [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187424984|gb|ACD04263.1| signal recognition particle-docking protein FtsY [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 282

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 110/300 (36%), Positives = 155/300 (51%), Gaps = 20/300 (6%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            + +KL   F+ +S              R+D    EELE  L+ +DIG+  A  I ++L 
Sbjct: 3   GFFKKLFTKFSRSS--------------RID---WEELEAELVAADIGIRRAMGIADQLK 45

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               +K +  + ++    E++ +     +         +P VILVVGVNG GKTT   KL
Sbjct: 46  E---SKGLDAENLVESTREVLRRAFPSTAPSLPAPPEGKPLVILVVGVNGTGKTTSAAKL 102

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +   G +V+LAA DTFR+AA++QL+ WAD+ +          D A++ YEA  QA  
Sbjct: 103 AHLLQKQGSRVLLAAADTFRAAAVEQLQSWADKLNIPICKGAPSQDPASVCYEAHTQAIR 162

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +    LI DTAGRLH    LM  + K+ R L + D  APHS L V+DATTG NAL Q   
Sbjct: 163 EGFQYLICDTAGRLHTRHNLMEELSKIRRTLAKQDASAPHSTLLVVDATTGANALAQARE 222

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH       +I+TKMDG+ +GG  + I+    I   FLG GEG  D EPF    +   + 
Sbjct: 223 FHKATPLDSVIITKMDGSGKGGVAVAIMDEMHISPSFLGTGEGAEDFEPFNRDRYVDSLL 282


>gi|13541823|ref|NP_111511.1| signal recognition particle protein Srp54 [Thermoplasma volcanium
           GSS1]
 gi|21362960|sp|Q979Y8|SRP54_THEVO RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|14325260|dbj|BAB60164.1| signal recognition particle protein srp54 [Thermoplasma volcanium
           GSS1]
          Length = 455

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 153/302 (50%), Gaps = 16/302 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
             S S  L+E I  I  S  +D    +E    L+ +L+++D+ V     I +E+  +   
Sbjct: 3   LESLSSSLRETIRKITGSTYIDKNTVKEISKDLQRILLKADVNVQTVLNITKEMERRALE 62

Query: 77  KD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           +   V +    Y V  +  ++L  L +P N +   +P  I++VG+ G GKTT  GKLS+ 
Sbjct: 63  EKPPVGMAHQDYMVKIIYEELLKILGEPSNVEL--KPQTIMLVGLYGHGKTTSAGKLSRF 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               GL   L A D  R AA +QL+  A+  +A F       D   +     +  +  + 
Sbjct: 121 FMKKGLSAGLIAADVHRYAAYEQLQQIAESVNAKFYGDPKEKDPVKIIKNGLEVLKDAQ- 179

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
            V IIDT+GR   +S L+  I ++   +K      P  VL V+DAT GQ A  + +  + 
Sbjct: 180 -VKIIDTSGRDSLDSDLIEEIRRIKEAVK------PDQVLMVIDATMGQQAGPESKAIND 232

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
             G TG+I+TKMDGTA+GGG +  V   ++P+YF+G GE ++D+E F  K F + + G  
Sbjct: 233 AVGVTGIIITKMDGTAKGGGALSAVAKMRVPIYFIGTGEHMDDMEIFDPKKFLSRLLGLG 292

Query: 315 DY 316
           D 
Sbjct: 293 DL 294


>gi|322368143|ref|ZP_08042712.1| signal recognition particle-docking protein FtsY [Haladaptatus
           paucihalophilus DX253]
 gi|320552159|gb|EFW93804.1| signal recognition particle-docking protein FtsY [Haladaptatus
           paucihalophilus DX253]
          Length = 372

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 98/310 (31%), Positives = 155/310 (50%), Gaps = 17/310 (5%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             GFA  +     G  +I+   +  +    ELE  L+ SD+ ++VAQ++++ +       
Sbjct: 73  RGGFAQKAKSFARG--EIVIEEQDVEDPLWELEMALLESDVEMSVAQEMLDGIRNDLVGA 130

Query: 78  DVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGK 130
                    DV E  +   L+ +     +DF        +P VI+  GVNGVGKTT I K
Sbjct: 131 TRKFSAETGDVVEDALRDSLLSVISVGQFDFDQRVAEADKPLVIIFTGVNGVGKTTSIAK 190

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           LS+   + G   ++A GDT+R+ A  Q++  AD      +  E G D AA+ Y+A + A 
Sbjct: 191 LSRYFEERGYSSVMANGDTYRAGANQQIREHADALDTKLIAHEQGGDPAAVIYDAVEYAD 250

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A  +D+++ DTAGRLH +  LM  + K+ RV+       P   + V +A  GQ+A+++ +
Sbjct: 251 AHDIDIVLGDTAGRLHTSEGLMDQLEKIGRVVD------PDMTIFVDEAVAGQDAVQRAK 304

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F   A   G I+TK D  ++GG  I I      P+ FLG G+G +D+E F  +     +
Sbjct: 305 EFDEAAEIDGSILTKADADSKGGAAISISHVTGKPILFLGTGQGYDDIEQFDPERMVERL 364

Query: 311 TGCLDYGEEK 320
            G  D  EE+
Sbjct: 365 LG--DEEEEE 372


>gi|42561024|ref|NP_975475.1| cell division protein FtsY [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|42492521|emb|CAE77117.1| Cell division protein FtsY [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
          Length = 400

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 181/306 (59%), Gaps = 10/306 (3%)

Query: 23  STSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
            ++    + I  +    ++ DD   EELED+LI++D+G+ +  K V  L+ K+  +D S 
Sbjct: 93  KSAFNFSKDIKKLSKKYKQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSF 151

Query: 82  QRVLYDVSELIHKMLMP---LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +   + E +++        +K +  DF  +R ++ ++VGVNG GKTT + K++   ++
Sbjct: 152 ENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE 211

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKK 193
            G KV++AA DTFR+ A  QL+ W         D V  +++ +D A++ ++A K+A+ + 
Sbjct: 212 LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQN 271

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+L+IDTAGRL N   LMA + KM +++++++  APH VL V+DATTGQN + Q E F 
Sbjct: 272 YDLLLIDTAGRLQNKVNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFS 331

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            VA  +G+I+TKMD T++GG  + I     IP+  +GVGE ++DL  F    +   ++  
Sbjct: 332 KVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSSG 391

Query: 314 LDYGEE 319
              G+E
Sbjct: 392 FMQGDE 397


>gi|156086872|ref|XP_001610843.1| signal recognition particle SRP54 protein [Babesia bovis T2Bo]
 gi|154798096|gb|EDO07275.1| signal recognition particle SRP54 protein, putative [Babesia bovis]
          Length = 499

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 140/305 (45%), Gaps = 14/305 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELL--TKR 74
            A  S ++ +    + +   + + V +E    +   L+ +D+ V + +++ E +    + 
Sbjct: 3   LAELSEQITQAFRKLHARTIITEEVIDEVIGDIVRALLSADVNVKLVRQLRENVKLQVRL 62

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH--VILVVGVNGVGKTTVIGKLS 132
           +A  +   +  +    +I + +  LS         + H  +I+ VG+ G GKTT   K +
Sbjct: 63  HADALGANKRKFIQKAVIEEFINMLSSDRKPYVPKKGHANIIMFVGLQGAGKTTTCTKFA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G +  L   DTFR+ A DQLK  A +    F  S   ++A  +A E   + + +
Sbjct: 123 YHYQKKGWRTALICADTFRAGAFDQLKQNAAKVKIPFFGSYSEANAVRVAAEGVAKFKEE 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D++I+DT+GR      L   +  +   +K      P  V+ V+D+  GQ    Q   F
Sbjct: 183 KYDIIIVDTSGRHKQEESLFEEMRLIHEAVK------PDDVIFVMDSHIGQACYDQAAAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           + V     +I+TK+DG A+GGG +  V     P+ F+G GE  ++ E F AK F + + G
Sbjct: 237 NKVVDVGSVIITKLDGHAKGGGALAAVAATNSPIIFIGTGEHFDNFEKFDAKSFVSRMLG 296

Query: 313 CLDYG 317
             D  
Sbjct: 297 MGDIN 301


>gi|330933421|ref|XP_003304165.1| hypothetical protein PTT_16633 [Pyrenophora teres f. teres 0-1]
 gi|311319393|gb|EFQ87728.1| hypothetical protein PTT_16633 [Pyrenophora teres f. teres 0-1]
          Length = 541

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 147/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLT---- 72
                 ++   +TD+  S  LD    D + +E+ + L+ +D+ V +   + + +      
Sbjct: 3   LQDLGRRINAAVTDLTRSPNLDEKAFDAMVKEISNALVEADVNVKLVMNLRQSIKRTVDF 62

Query: 73  KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K  A  V+ +R++   V + + KM+ P ++PF      + +VI+ VG+ G GKTT   KL
Sbjct: 63  KHLAPGVNKKRLIQKAVFDELVKMVDPHAEPFK-PRKGKSNVIMFVGLQGAGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G K  L   DTFR+ A DQLK  A +    +  S   +D   +A E  ++ + 
Sbjct: 122 ARWYQARGFKACLVCADTFRAGAFDQLKQNATKAKIPYYGSHTQTDPVVVAGEGVEKFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ +++I+DT+GR      L   + ++  V+       P   + VLD T GQ A  Q   
Sbjct: 182 ERFEIIIVDTSGRHRQEKDLFDEMVQIQNVVT------PDQTIMVLDGTIGQAAESQARA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  + F + + 
Sbjct: 236 FKEAADFGAIIITKTDGAAAGGGAISAVAATHTPIVFLGNGEHMLDLERFAPQAFVSKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|20095049|ref|NP_614896.1| Signal recognition particle GTPase [Methanopyrus kandleri AV19]
 gi|19888325|gb|AAM02826.1| Signal recognition particle GTPase [Methanopyrus kandleri AV19]
          Length = 349

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 163/308 (52%), Gaps = 22/308 (7%)

Query: 24  TSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
              +LK  +   ++    D + + +ELE  LI +D+ V VA+ I EEL  +   + V  +
Sbjct: 51  LKERLKRVVKREVTITEADIEDILDELELELISNDVAVEVAESIREELKKELVGRRVKGK 110

Query: 83  RVLYDVSEL-----IHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +  V E      +  +L P      +          RP +I+ VGVNG GKTT I K+
Sbjct: 111 SEIPKVVEEGFREALLSVLEPKKEVDLMETVEKARQDGRPAIIMFVGVNGSGKTTTIAKV 170

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K + D G  V++AA DTFR+AAI+QL+  A+R     +  E G D  A+A+ A + A+A
Sbjct: 171 AKLLKDHGYSVVIAAADTFRAAAIEQLEEHAERLGVTLIKGERGDDPTAVAFNAVQHAEA 230

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DV+++DTAGR + +  LM  + KM RVL+      P  V+ V DA  G +A+ Q + 
Sbjct: 231 KGKDVVLVDTAGRAYTDVNLMEELKKMKRVLE------PDLVVFVGDALAGNDAIEQAKT 284

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH   G    I+TK+D  A+GG ++ I      P+ +LGVG+  +DL+ F  + F   + 
Sbjct: 285 FHEYVGIDCAILTKVDADAKGGAVLSISKVTGAPILYLGVGQDYDDLKAFSPEWFVERVI 344

Query: 312 GCLDYGEE 319
           G    GEE
Sbjct: 345 G----GEE 348


>gi|222823997|ref|YP_002575571.1| signal recognition particle protein [Campylobacter lari RM2100]
 gi|222539219|gb|ACM64320.1| signal recognition particle protein [Campylobacter lari RM2100]
          Length = 445

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 143/300 (47%), Gaps = 9/300 (3%)

Query: 21  FASTSLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           F   S   K  +  +  +   +      + L+  L+++D+   V ++++  +        
Sbjct: 2   FEIVSESFKSAVNKLRFVDDEKALKNALDTLKKALLKADVHHKVTKELLALVENDVKTNG 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +  ++ L  + + + ++L    K   + F S  P V+L+ G+ G GKTT   K++  +  
Sbjct: 62  IGQKQFLDSIKKNLEEILSVKGKNQGFVFASKPPTVVLMCGLQGGGKTTTTVKIANYLKL 121

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++AA D  R AA++QL+        D    E  ++   +A +A ++A+    DVL
Sbjct: 122 RNKKVLIAACDLQRLAAVEQLRQLTQANELDLFFIENENNPLNVAKQALEKAKNSMYDVL 181

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  ++ LM  + ++  +L       P  V  V DA +GQ+ ++    F+    
Sbjct: 182 LVDTAGRLAIDTALMNELKEVKAILN------PDEVFYVADAMSGQDGVKTASSFNEALE 235

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            TG+I++K D   +GG  + I     +P+ F+GVGE + DLE F+       I G  D  
Sbjct: 236 ITGVILSKFDADTKGGVALGIAKQIGVPLRFIGVGEKVADLEVFIPDRIVNRIMGEGDLA 295


>gi|291277533|ref|YP_003517305.1| putative signal recognition particle receptor protein [Helicobacter
           mustelae 12198]
 gi|290964727|emb|CBG40582.1| putative signal recognition particle receptor protein [Helicobacter
           mustelae 12198]
          Length = 292

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 104/286 (36%), Positives = 167/286 (58%), Gaps = 6/286 (2%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
            K  + I++ +         +E LE++LI +D+   V +++++ L        + V    
Sbjct: 6   KKTAQNISNFLGGGAKQQIEKELLEEVLIEADVDYEVIEQLLQHLPQNITRNQLEVGLDR 65

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           +   E  +       K    D   +P V L++GVNG GKTT I KL+K+  D+G KV+L 
Sbjct: 66  FFRGESYYD------KVSLKDIPTKPLVELIIGVNGAGKTTTIAKLAKRYKDSGKKVLLG 119

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           AGDTFR+AAIDQLK+W+++ S D + ++ GSD +ALAY+      A+K+D +IIDTAGRL
Sbjct: 120 AGDTFRAAAIDQLKLWSEKISVDIISTQYGSDPSALAYDTINAGSARKMDHIIIDTAGRL 179

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           HN + L   + K+ RV  +   + P+  + +LD T G +++ Q ++FH +    G+I+TK
Sbjct: 180 HNQTNLKNELLKITRVCSKALNNEPYRKILILDGTQGSSSINQAKIFHEMLKVDGVILTK 239

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +DGT++GG ++ I+   K+P+  +GVGE   DL  F  KDF   + 
Sbjct: 240 LDGTSKGGAILSIIHALKLPIIAIGVGERAEDLLDFDQKDFINKLL 285


>gi|313678699|ref|YP_004056439.1| signal recognition particle-docking protein FtsY [Mycoplasma bovis
           PG45]
 gi|312950542|gb|ADR25137.1| signal recognition particle-docking protein FtsY [Mycoplasma bovis
           PG45]
          Length = 352

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 106/287 (36%), Positives = 174/287 (60%), Gaps = 7/287 (2%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE----LIHK 94
           +++D+   +ELE++LI SDI   +   I+  +  +   ++++  + + ++      +++ 
Sbjct: 67  KKIDEEYFDELEEILIMSDISAKLVYAIITHIKNEVKIRELTNTKDIGELIADQMFVVYT 126

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
               +    N +   R ++++ +GVNG GKTT I K++ K    G KV++AA DTFR+ A
Sbjct: 127 NKSVVDTTLNVE-DDRLNILIFIGVNGCGKTTSIAKVAHKYIKEGKKVLIAAADTFRAGA 185

Query: 155 IDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           +DQ+ IW++R  AD V   + G+D A++ Y A ++A+A+  D+L+IDTAGRL N   LM 
Sbjct: 186 VDQIAIWSERVGADIVKPVKEGADPASVVYSALEKAKAENYDLLLIDTAGRLQNKINLMN 245

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + KM  ++ +    APH  L VLDATTGQN + Q + F  VA  TG+I+TKMDGT++GG
Sbjct: 246 ELKKMYSIINKFQEGAPHECLLVLDATTGQNGVSQAKAFSEVANPTGIILTKMDGTSKGG 305

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG-CLDYGEE 319
            ++ I     I V +LG+GEG++DL+ F   +F   +T   +D  EE
Sbjct: 306 IVLSIKDEFNINVKYLGLGEGLDDLQEFDLDNFIYEMTKDLIDKNEE 352


>gi|237753290|ref|ZP_04583770.1| signal recognition particle protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375557|gb|EEO25648.1| signal recognition particle protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 296

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 106/300 (35%), Positives = 164/300 (54%), Gaps = 16/300 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISS--RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           + K F  T  K  + I D++    ++L   V EE+   LI +D+   + + I+  L  + 
Sbjct: 2   MFKVFKKTLEKTTQNIRDLLPKARKKLSKEVLEEI---LIATDMDYDLVEMILSPLGNEI 58

Query: 75  YAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              ++ V         L+          K      S +P V L+VGVNG GKTT I KL+
Sbjct: 59  SKNELEVA--------LLRLFRGESYYDKVQAKKVSAKPCVDLIVGVNGAGKTTTIAKLA 110

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G  V+L AGDTFR+AAI+Q+K+W DR     V S+IG D +A+A++    A AK
Sbjct: 111 NAYKKQGKSVILGAGDTFRAAAIEQIKLWGDRLGVPVVASQIGHDPSAVAFDVITSAVAK 170

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +DV IIDTAGRLHN S L   + K++R+  +    APH  + +LD T G ++L Q ++F
Sbjct: 171 NLDVAIIDTAGRLHNQSNLQQELEKIVRICNKAKEGAPHRKILILDGTQGTSSLDQAKIF 230

Query: 253 HAVA-GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +    G  G+I+TK+DGT++GG +  ++   ++P+ ++GVGEG  DL  F    +  ++ 
Sbjct: 231 NQTLGGVDGVIITKLDGTSKGGAIFSMIYALRVPILYIGVGEGAEDLVAFDENAYIQMLL 290


>gi|31544492|ref|NP_853070.1| signal recognition particle protein Ffh [Mycoplasma gallisepticum
           str. R(low)]
 gi|31541337|gb|AAP56638.1| signal recognition particle protein Ffh [Mycoplasma gallisepticum
           str. R(low)]
 gi|284930548|gb|ADC30487.1| signal recognition particle protein Ffh [Mycoplasma gallisepticum
           str. R(high)]
          Length = 451

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 78/313 (24%), Positives = 145/313 (46%), Gaps = 20/313 (6%)

Query: 14  IRKLTKGFASTSLKL-KEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVE 68
           +++L     S    +  + +   + ++ + +     V  E+   L+ +D+ + V +  ++
Sbjct: 1   MKRLINMLKSMISSIVTKSLKKRLLNQTIKEEDLTEVLREIRIALLDADVNINVVKTFIK 60

Query: 69  ELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +  K   + V          L  + + +  +L    +P   D   +   I++VG+ G G
Sbjct: 61  AIKEKAIGQAVDRNTDVHAYFLKIIKDELVNILGKYQQPLKTD--KKLAKIMLVGLQGSG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT + KL+K ++    K  L  G D +R AAIDQL   A++ +  F  +E  SD    A
Sbjct: 119 KTTTVAKLAKFLNKQKQKNSLLVGLDVYRPAAIDQLNTLAEQINMPFY-NEGLSDPVKTA 177

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             + + A+ K  D++I DTAGRL  N  LM     ++ +   +DP     ++ V+D  +G
Sbjct: 178 KNSIEIAKEKNCDLIIYDTAGRLQTNVELMNE---LVNIRNTVDP---DEIILVVDGLSG 231

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q  +     F+     +G+I+TK+D  AR G  + +     +P+ F   GE ++ +E F 
Sbjct: 232 QEIINIATEFNNYLKLSGIIITKLDSDARAGAALSLRSILNVPIKFTTSGEKLDAIELFY 291

Query: 303 AKDFSAVITGCLD 315
            +  +  I G  D
Sbjct: 292 PERIADRILGFGD 304


>gi|62733121|gb|AAX95238.1| signal recognition particle protein, putative [Oryza sativa
           Japonica Group]
          Length = 1072

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 140/309 (45%), Gaps = 21/309 (6%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KL+    D+++   + + +R+ +   L+ +D+ + V ++ V  
Sbjct: 68  RAEMFGQLTTGLESAWNKLRGV--DVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVSS 124

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  K    D+   R +    +L+   L   S     +      H  LV  + G     V 
Sbjct: 125 ISEKALGSDLI--RGVRPEQQLVKTNLCAFSTGQITYSVVQIVHDELVKLMGGEVSDLVF 182

Query: 129 GKLSKKMSDAGLKVMLAAG--DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            K       +G  V+L AG  D +R AAIDQL I  ++           +  A +   A 
Sbjct: 183 AK-------SGPTVILLAGLQDVYRPAAIDQLTILGEQVGVPVYSEGTEAKPAQITKNAV 235

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           ++A+ K +D +++DTAGRL  +  +M  + ++ + +       P  VL V+DA TGQ A 
Sbjct: 236 EEAKRKNIDAIVMDTAGRLQIDKSMMVELKEVKKAVN------PTEVLLVVDAMTGQEAA 289

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
             V  F+   G TG I+TK+DG +RGG  + +      P+ F+G GE + DLE F     
Sbjct: 290 ALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERMEDLELFYPDRM 349

Query: 307 SAVITGCLD 315
           +  + G  D
Sbjct: 350 AQRVLGMGD 358



 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 86/320 (26%), Positives = 134/320 (41%), Gaps = 64/320 (20%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KL+   TD ++   + + +R+ +   L+ +D+ + V +  +E 
Sbjct: 527 RAEMFGQLTTGLESAWNKLRG--TDQLTKDNIAEPMRD-IRRALLEADVSLPVVRSFIES 583

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +  K    DV   R +    +L+                               KT+   
Sbjct: 584 VTEKAVGTDVI--RGVKPEQQLV-------------------------------KTS--- 607

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
                +   G   ML A D +R AAIDQL I   +           +  + +A    K+A
Sbjct: 608 -----LRLQGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKNGIKEA 662

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL--- 246
           ++KK DV+I+DTAGRL  +  +M+ + ++ R +       P  VL V+DA TGQ A    
Sbjct: 663 KSKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVN------PTEVLLVVDAMTGQEAAFAL 716

Query: 247 -----------RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
                        V  F+   G TG I+TK+DG +RGG  + I      P+ F+G GE +
Sbjct: 717 RLTRISFLIWPALVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERM 776

Query: 296 NDLEPFVAKDFSAVITGCLD 315
            DLEPF     +  I G  D
Sbjct: 777 EDLEPFYPDRMAQRILGMGD 796


>gi|218681649|ref|ZP_03529450.1| cell division protein [Rhizobium etli CIAT 894]
          Length = 423

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 114/207 (55%), Positives = 157/207 (75%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               LSW ++L  G A TS +L   I  + + R+LDD   ++LEDLLI++D+GV  A ++
Sbjct: 217 PQPKLSWFQRLRNGLARTSSQLTGQIAALFTKRKLDDETLQDLEDLLIQADLGVETALRV 276

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            + L ++RY KDV+ + V   ++  I K+L P++KP   D SH+PHVILVVGVNG GKTT
Sbjct: 277 TDTLASERYGKDVTGEDVSRIMASEIAKVLKPVAKPLQLDLSHKPHVILVVGVNGTGKTT 336

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+ K+S AGLKVMLAAGDTFR+AAI+QLKIWA+RT+++F+ +++G+DAA LAY+AF
Sbjct: 337 TIGKLAAKLSGAGLKVMLAAGDTFRAAAIEQLKIWAERTNSEFIGTKLGADAAGLAYDAF 396

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMA 213
           +QA+A+K DVLI+DTAGRL N + LMA
Sbjct: 397 EQAKARKCDVLIVDTAGRLQNKAELMA 423


>gi|162148863|ref|YP_001603324.1| signal recognition particle protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545388|ref|YP_002277617.1| signal recognition particle protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787440|emb|CAP57035.1| putative signal recognition particle protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533065|gb|ACI53002.1| signal recognition particle protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 461

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 140/308 (45%), Gaps = 18/308 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD-GVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL      +     L +  V E + +    ++ +D+ + V +  V ++  +   
Sbjct: 2   FETLSGKLSGVFDGLAKRGALSEADVAEAMREVRLAMLDADVALPVVKDFVAKVRERAVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +V       Q V   V++ +   L      P N +    P  IL+VG+ G GKTT  GK
Sbjct: 62  HEVLGSISPGQAVAKIVNDALIDALGGAGAVPLNLNAV-PPVPILMVGLQGSGKTTTSGK 120

Query: 131 LSKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++ +++    K +L A+ DT R AA  QL+  A+R     +    G     +A  A    
Sbjct: 121 IALRLATRERKRVLLASLDTQRPAAQLQLQQLAERAGVASLPIVPGQTPVEIARRAMDTG 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +  DV+I+DTAGRL  +  LM  +  +           P   L V+DA TGQ+A+   
Sbjct: 181 RREGYDVVILDTAGRLSIDEALMDEVRAI------RTETTPAETLLVVDAMTGQDAVNTA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F+   G TG++MT+MDG ARGG  + +      P+   G GE ++ LE F  +  +  
Sbjct: 235 RAFNEAVGVTGVVMTRMDGDARGGAALSMRAMTGAPIKLTGSGEKLDALEEFHPERVAGR 294

Query: 310 ITGCLDYG 317
           I G  D  
Sbjct: 295 ILGLGDIA 302


>gi|154148594|ref|YP_001406877.1| signal recognition particle-docking protein FtsY [Campylobacter
           hominis ATCC BAA-381]
 gi|153804603|gb|ABS51610.1| signal recognition particle-docking protein FtsY [Campylobacter
           hominis ATCC BAA-381]
          Length = 288

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 103/301 (34%), Positives = 160/301 (53%), Gaps = 20/301 (6%)

Query: 13  WIRKLTKGFAST--SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
                 KG   T  S+K      + IS         E LED+L+ +D+   + ++I+  L
Sbjct: 1   MFNFFKKGLEKTINSMKFANAGKNKISK--------EILEDMLLEADVDYDIVEEILYYL 52

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +   K         D+  +++      S         +P V L++GVNG GKTT I K
Sbjct: 53  PPQDDVKK-------DDLKRVMNTYFKYESPEIPQS---KPFVELILGVNGAGKTTSIAK 102

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+     +G  V+L A DTFR+ AI+QLK+WA++     V +  G D AA+A++    A 
Sbjct: 103 LANLYKKSGKSVILGACDTFRAGAIEQLKLWAEKIEVPIVATAQGHDPAAVAFDTISSAV 162

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           AKK+D ++IDTAGRL N   L   + K++R+  +    APH  + +LDAT G N++ Q +
Sbjct: 163 AKKIDNVLIDTAGRLQNQKNLAKELEKIVRISAKALSSAPHRKIIILDATQGNNSVIQAK 222

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F+ +A   G+I+TK+DGT +GG L  I    +IP+ ++GVGE + DL  F A++F   +
Sbjct: 223 AFNEIAKIDGIIITKLDGTPKGGALFGIARELEIPILYIGVGEKMEDLIEFNAQNFVETL 282

Query: 311 T 311
            
Sbjct: 283 V 283


>gi|20092902|ref|NP_618977.1| signal recognition particle receptor [Methanosarcina acetivorans
           C2A]
 gi|19918211|gb|AAM07457.1| signal recognition particle receptor [Methanosarcina acetivorans
           C2A]
          Length = 417

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 99/309 (32%), Positives = 165/309 (53%), Gaps = 16/309 (5%)

Query: 12  SWIRKL--TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           S+ +K+    GFA  +  L       + ++ L++ + E LE  L+ SD+ ++V++ IVE 
Sbjct: 114 SFFKKVVPKVGFAQKAKALVFNREVYLDNKDLEEPLWE-LEMGLLESDLALSVSEAIVES 172

Query: 70  LLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDF------SHRPHVILVVGVNGV 122
           +  +       +     ++ E  + K ++ +     +DF        +P  I+ VG+NG 
Sbjct: 173 VKNQLTGTTKRIGSNTGEIVEAALKKAILEVVSANTFDFDEYVKNREKPVHIVFVGINGT 232

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT I K++ ++  +G  V+LAAGDTFR+ AIDQL I A+R     +  + G+D AA+ 
Sbjct: 233 GKTTSISKITNRLLKSGYSVVLAAGDTFRAGAIDQLGIHANRLGVKMIKHQAGADPAAVI 292

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A + A+A K+D ++ DTAGR+H N  LMA + K+ RV        P  ++ V +A  G
Sbjct: 293 YDAVQYAKAHKIDFVLSDTAGRMHTNMNLMAQMEKICRVST------PDLIIFVDEAVAG 346

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            +A+ +   F+      G I+TK+D  A+GG  I I      P+ F G+G+G  DL+ F 
Sbjct: 347 NDAVERAAQFNEAVPIDGSILTKIDADAKGGAAISIAYITGKPILFFGIGQGYEDLKKFD 406

Query: 303 AKDFSAVIT 311
            + F   + 
Sbjct: 407 PEWFVDQLF 415


>gi|269302996|gb|ACZ33096.1| signal recognition particle protein [Chlamydophila pneumoniae
           LPCoLN]
          Length = 448

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 143/304 (47%), Gaps = 20/304 (6%)

Query: 23  STSLKLKEGITDIISSRRLDDG-VREELED---LLIRSDIGVAVAQKIVEELLTKRYAKD 78
           S S KL    + ++SSRR+++  + E + +    L+ +D+   V +  + ++  K   ++
Sbjct: 4   SLSQKLSSIFSSLVSSRRINEENISESIREVRLALLDADVNYHVVKDFISKVKEKILGEE 63

Query: 79  V-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           +       Q+ +  + E +   L    + F       P +IL+ G+ G GKTT   KL+ 
Sbjct: 64  IWKHVSPGQQFIRCLHEELVAFLSDGREEFTIQ--KTPSIILLCGLQGAGKTTTAAKLAD 121

Query: 134 K--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
               +    KV++   D  R AA+DQLKI   +T A+F  S+       +  +A   A+ 
Sbjct: 122 YVIKNKKAKKVLVVPCDLKRFAAVDQLKILVAQTKAEFYQSQEN-KPIDVVVKALAYAKE 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D +I+DTAGRL+ ++ LM  +  + +V +       +  L V++   GQ+ L  V+ 
Sbjct: 181 NGHDFVILDTAGRLNIDNELMEELTAIQKVSQA------NERLFVMNVAMGQDVLATVQA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG+I++  DG AR G +  I      P+ F G GE I DL  F  +  +  I 
Sbjct: 235 FDQSLDLTGVILSMTDGDARAGAVFSIKHVLGKPIKFEGCGERIQDLRSFDPQSMAERIL 294

Query: 312 GCLD 315
           G  D
Sbjct: 295 GMGD 298


>gi|148642761|ref|YP_001273274.1| signal recognition particle GTPase SRP54 [Methanobrevibacter
           smithii ATCC 35061]
 gi|148551778|gb|ABQ86906.1| signal recognition particle GTPase SRP54 [Methanobrevibacter
           smithii ATCC 35061]
          Length = 470

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 91/297 (30%), Positives = 154/297 (51%), Gaps = 19/297 (6%)

Query: 33  TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD----- 87
              IS + L+D + E LE  L+  D+ + VA  +V+ +      + +     + +     
Sbjct: 177 AKTISEKHLEDILWE-LEMGLLEGDVAMEVASAVVDSVKDDLVGRKIKRSNDITEYTYNA 235

Query: 88  VSELIHKMLMPLSKPFNWDFSHR-----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           +   + +++    K        +     P V++ VG+NG GKTT IGKL+      G   
Sbjct: 236 LRNAVAEIIDIPGKSMTEMIEAKKAQGEPLVVMFVGINGTGKTTTIGKLANYYLKKGYTP 295

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ++AA DTFR+ AI+Q+   AD+     +  + GSD AA+A++A + A+A+  ++++IDTA
Sbjct: 296 VIAAADTFRAGAIEQVNYHADKVGVKLIKHQKGSDPAAVAFDAVEHAKAQGKELVLIDTA 355

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GR+  N+ LM  + K+ RV K      P  V+ V DA TG +A +Q   F+      G+I
Sbjct: 356 GRMQTNTNLMDEMKKIKRVAK------PDLVVFVGDALTGNDATQQASKFNEAIDLDGVI 409

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319
           +TK D  ++GG  + I    K P+ FLG+G+G +D++ + A      +    + GEE
Sbjct: 410 LTKADADSKGGASLSIGYVIKKPILFLGMGQGYDDIKEYDADWMLNQLFS--ESGEE 464


>gi|148508292|gb|ABQ76076.1| signal recognition particle receptor SRalpha [uncultured
           haloarchaeon]
          Length = 413

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 97/297 (32%), Positives = 150/297 (50%), Gaps = 17/297 (5%)

Query: 27  KLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAK-DVSV 81
           +LK           +++   EE    LE  L+ SD+ + VA++I+  + +K   +    V
Sbjct: 118 RLKRAAAFATGKIVIEEEDLEEPLWQLEMALLESDVEIQVAEEILGTIRSKMLGETRAQV 177

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHR------PHVILVVGVNGVGKTTVIGKLSKKM 135
                 V E +   L  +     +DF  R      P  I+  GVNGVGKTT I KL + +
Sbjct: 178 NTTAALVEEALSDALYEVISVGQYDFDSRVESADSPMTIVFTGVNGVGKTTSIAKLVQYL 237

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              GL V++A GDT+R+ A +Q++  A       +  E G D AA+ Y+A + A+A  +D
Sbjct: 238 ESRGLSVVMANGDTYRAGANEQIREHAKTLDTKLIAHEQGGDPAAVLYDAVEYAEANDID 297

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V++ DTAGRLH ++ LMA + K+ RV+       P   L V +A  GQ+A+ + + F+  
Sbjct: 298 VVLGDTAGRLHTSNDLMAQLEKIDRVVN------PDMTLFVDEAVAGQDAVERAKQFNEA 351

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           A   G ++TK D  + GG  I I      P+ FLGVG+  +D+E F  K     + G
Sbjct: 352 AEIDGTVLTKADADSNGGAAISIAYVTGKPILFLGVGQEYDDIERFDPKSMVNQLLG 408


>gi|239982559|ref|ZP_04705083.1| signal recognition particle [Streptomyces albus J1074]
          Length = 393

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 173/306 (56%), Gaps = 5/306 (1%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +   + +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q++VE 
Sbjct: 89  TEGRLVRLRARLARSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVVPTQELVER 148

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSHRPHVILVVGVNGVGKTT 126
           L  +         + L  +       L+    P      +    P V++VVGVNG GKTT
Sbjct: 149 LRERVRVLGTRTPQELRTLLREELLKLVATDAPRAVKTDNGLETPAVVMVVGVNGTGKTT 208

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++A++A 
Sbjct: 209 TTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAV 268

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATTGQN L
Sbjct: 269 KEGIAEHADVVLIDTAGRLHTKAGLMDELGKVKRVVEKQAP--LDEVLLVLDATTGQNGL 326

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF  + F
Sbjct: 327 VQARVFAEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFDPEAF 386

Query: 307 SAVITG 312
              + G
Sbjct: 387 VDALIG 392


>gi|296126133|ref|YP_003633385.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Brachyspira murdochii DSM 12563]
 gi|296017949|gb|ADG71186.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Brachyspira murdochii DSM 12563]
          Length = 451

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 143/308 (46%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LTK  ++   K+      +++ + + D +   +++ L+ +D+ +  A K +EE   
Sbjct: 1   MFDNLTKSISNVFSKIHG--KKVLTDKDITDSLL-TIKEALLSADVSLEAANKFLEEATN 57

Query: 73  KRYAKD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +   K+         + + DV + +  M+         +   +  + L+ G+ G GKTT 
Sbjct: 58  RAIGKEKIEGVEPANQFIADVHDTLVNMIGEGESGLKLEPVEKTTITLLFGLQGSGKTTT 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+K   D   +VM+   D  R AA++QL + A      +        A  +  +A  
Sbjct: 118 TAKLAKYYKDK-RRVMMVGLDVHRPAAMEQLAVLAREVGVPYHIDTKEKKAYKILKKALA 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ ++ +++++DTAGRL  +  +M     + RV+   D       L V+D+T GQ+   
Sbjct: 177 IAKKEQYNMILVDTAGRLEIDENMMME---LRRVVNSADVT---EKLLVVDSTAGQSVYD 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F +  G  G+I+TK D   RGG  + +      PV F+GVGE I+D++ F AK  +
Sbjct: 231 VAKSFQSNIGINGVILTKFDSGVRGGAALSLKYATGSPVKFVGVGEHIDDIDVFDAKRVA 290

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 291 GQILGMGD 298


>gi|156100321|ref|XP_001615888.1| signal recognition particle 54 kDa protein [Plasmodium vivax SaI-1]
 gi|148804762|gb|EDL46161.1| signal recognition particle 54 kDa protein, putative [Plasmodium
           vivax]
          Length = 500

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 135/305 (44%), Gaps = 14/305 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE-LED---LLIRSDIGVAVAQKIVEELLTKRYA 76
                 +L   +  + +S   DD   EE L++    LI +DI ++  + I   +      
Sbjct: 3   LTELGTQLTCALQKLQASAVADDSAIEECLKEVMRALILADINISYLKDIKSNIKKNIEK 62

Query: 77  K-DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLS 132
             D+        V + + + L+ L +     +  +    +VIL VG+ G GKTT   K +
Sbjct: 63  NIDLYGNNKKRLVQQYVVEELINLLEGKKESYVPKKGSRNVILFVGLQGSGKTTTCTKFA 122

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G K  L   DTFR+ A DQLK  A +    F  S    D   +A +       +
Sbjct: 123 HYYQKKGFKTALVCADTFRAGAFDQLKQNAAKVKIPFYGSYSEVDPVKIASDGVNAFLKE 182

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D++I+D++GR    S L   + ++   +       P  ++ V+D+  GQ+   Q   F
Sbjct: 183 KYDLIIVDSSGRHKQESELFEEMKQVESSI------RPEEIVFVIDSHIGQSCHDQAMAF 236

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                   +I+TK+DG A+GGG +  V +   P+ F+G GE IND E F AK F + + G
Sbjct: 237 KNSVTLGSIIITKIDGHAKGGGALSAVASTGCPITFIGTGEHINDFENFEAKSFVSRLLG 296

Query: 313 CLDYG 317
             D  
Sbjct: 297 LGDIN 301


>gi|328874643|gb|EGG23008.1| signal recognition particle 54 kDa subunit [Dictyostelium
           fasciculatum]
          Length = 502

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 148/299 (49%), Gaps = 16/299 (5%)

Query: 26  LKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY----AK 77
            ++   +  + +S  +++     + +E+ + L R+D+ +++  K+ + +  +      A 
Sbjct: 8   NQISSALAAMSNSTIINEETINHLLKEVGNALSRADVSMSLIIKMRKNIQAQIKLDQMAA 67

Query: 78  DVSVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            ++ +R++  V  + + K+L P   P+      + ++I+ VG+ G GKTT + KL+    
Sbjct: 68  GLNKRRIIRKVVFDELIKLLDPGVTPWK-PTKGKSNIIMFVGLQGAGKTTSVTKLAHFYK 126

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
             G    +   DTFR+ A  QL+  A +    F  SE   D  A A +  +  + +  ++
Sbjct: 127 RKGWNTAMVCADTFRAGAFAQLQHNATKAKIPFYGSESEKDPVAAAKKGVEIFRKEGAEI 186

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +I+DT+GR    S L   + ++  V++      P +V+ V+D++ GQ A  Q   F    
Sbjct: 187 IIVDTSGRHKQESELFKEMSEIETVIQ------PDNVIFVMDSSIGQAAYDQAMAFKTSV 240

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               +I+TKMDG ++GGG I  V   + P+ F+G GE I DLE F    F + + G  D
Sbjct: 241 KVGSVIITKMDGNSKGGGAISAVAATQSPIIFIGSGEHIPDLEIFNPTSFVSKLLGLGD 299


>gi|298526385|ref|ZP_07013794.1| signal peptide binding domain-containing protein [Mycobacterium
           tuberculosis 94_M4241A]
 gi|298496179|gb|EFI31473.1| signal peptide binding domain-containing protein [Mycobacterium
           tuberculosis 94_M4241A]
          Length = 462

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 14/243 (5%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKTT+ GKL+ ++   G
Sbjct: 7   PAQQVVKIVNEELISILGGETRELAF-AKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQG 65

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA-------K 192
              +L A D  R AA++QL++  +R          G+   +   +    A A       K
Sbjct: 66  HTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAK 125

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV+I+DTAGRL  +  LMA    +   +       P  VL VLDA  GQ+A+     F
Sbjct: 126 HFDVVIVDTAGRLGIDEELMAQAAAIRDAIN------PDEVLFVLDAMIGQDAVTTAAAF 179

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
               G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F     ++ I G
Sbjct: 180 GEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILG 239

Query: 313 CLD 315
             D
Sbjct: 240 MGD 242


>gi|39939165|ref|NP_950931.1| signal recognition particle-docking protein FtsY [Onion yellows
           phytoplasma OY-M]
 gi|39722274|dbj|BAD04764.1| signal recognition particle-docking protein [Onion yellows
           phytoplasma OY-M]
          Length = 347

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 97/317 (30%), Positives = 164/317 (51%), Gaps = 25/317 (7%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            K   G   T     +  T +  S  ++  + + LE LLI++D G      +++ +  + 
Sbjct: 16  DKYQLGLKKTKASFLDFQTLLKQSNNIEKTLLQALESLLIQADFGTKTTLFLMQAIKDEI 75

Query: 75  YAKDVSVQRVL--------YDVSELIHKMLMPLSKPFNWDFSHR---------------- 110
               +   + L        +D+ + +  M   L  P   +  ++                
Sbjct: 76  NQFQIKNPQKLPSVVVSKMFDLYQNMKGMKGILESPKEQEKQNQYSNSTNPKDTFQSQNN 135

Query: 111 -PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            P + L  GVNGVGKTT IGK+++ +   G KV+L A DTFR+ A++QL+IWA R   + 
Sbjct: 136 LPQMYLFTGVNGVGKTTTIGKMAEALKQEGKKVLLIAADTFRAGAVEQLQIWAKRVGVEV 195

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
            C  + +  A++ +E  + A+++  D+++ DTAGRL N + LM  + K+ RV+ +  P +
Sbjct: 196 FCKPLPAHPASVIFEGIELAKSQNYDIILCDTAGRLQNKTNLMQELSKINRVICKHLPAS 255

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VLDATTGQNA+ QV++F+     +G I+TK+DGT++GG +  I   + +P  ++
Sbjct: 256 NLQTFLVLDATTGQNAINQVDLFNQATPLSGAILTKLDGTSKGGIVFAIKYLYNLPTKYI 315

Query: 290 GVGEGINDLEPFVAKDF 306
           GVGE   DL  F  K++
Sbjct: 316 GVGEKSQDLITFDVKNY 332


>gi|301321333|gb|ADK69976.1| signal recognition particle-docking protein FtsY [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 412

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 181/306 (59%), Gaps = 10/306 (3%)

Query: 23  STSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
            ++    + I  +    ++ DD   EELED+LI++D+G+ +  K V  L+ K+  +D S 
Sbjct: 105 KSAFNFSKDIKKLSKKYKQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSF 163

Query: 82  QRVLYDVSELIHKMLMP---LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +   + E +++        +K +  DF  +R ++ ++VGVNG GKTT + K++   ++
Sbjct: 164 ENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE 223

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKK 193
            G KV++AA DTFR+ A  QL+ W         D V  +++ +D A++ ++A K+A+ + 
Sbjct: 224 LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQN 283

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+L+IDTAGRL N   LMA + KM +++++++  APH VL V+DATTGQN + Q E F 
Sbjct: 284 YDLLLIDTAGRLQNKVNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFS 343

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            VA  +G+I+TKMD T++GG  + I     IP+  +GVGE ++DL  F    +   ++  
Sbjct: 344 KVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSSG 403

Query: 314 LDYGEE 319
              G+E
Sbjct: 404 FMQGDE 409


>gi|325968148|ref|YP_004244340.1| GTP-binding signal recognition particle SRP54 G- domain
           [Vulcanisaeta moutnovskia 768-28]
 gi|323707351|gb|ADY00838.1| GTP-binding signal recognition particle SRP54 G- domain
           [Vulcanisaeta moutnovskia 768-28]
          Length = 446

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 90/302 (29%), Positives = 148/302 (49%), Gaps = 20/302 (6%)

Query: 28  LKEGITDIISSRR----LDDGVRE----ELEDLLIRSDIGVAVAQKIV----EELLTKRY 75
           L E  T++++  R    +D+   +    E++ +L+R+D+   V   I     E    ++ 
Sbjct: 6   LVEAFTNLVNRIRGLNYIDEATLKEILREIQRILLRADVSADVVSSITKTIEERFRQEKP 65

Query: 76  AKDVSVQRV-LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            + ++ +   LY + + + K L     P + + S RP+ ++++G+ G GKTT   KL++ 
Sbjct: 66  PQGITSKEFLLYLLYQELVKALGGEEVP-SVNISKRPYKLMLIGIEGSGKTTTAAKLARF 124

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
                LKV L   DT+R  A  QLK  A++ +A F   E   D  A+     +  Q  KV
Sbjct: 125 YIKRNLKVGLIETDTYRPGAYYQLKQLAEKVNALFYGEEDSKDPIAILRHGLEYMQRNKV 184

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++IIDTAGR  N   L+     +       D   P  V+ V+DAT G+ A  Q E F  
Sbjct: 185 DLIIIDTAGRHRNEEELLKEAKAIY------DEAKPDEVMLVIDATIGRQAAAQTEAFMK 238

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
                 + +TKMD TA+ GG +  V+     + F+G+GE I+++E F A  F + + G  
Sbjct: 239 YVPIHSVFLTKMDSTAKAGGALTSVIRSGARIKFIGIGEDIDEVEIFDANKFVSRLLGMG 298

Query: 315 DY 316
           D 
Sbjct: 299 DL 300


>gi|291454401|ref|ZP_06593791.1| signal recognition particle [Streptomyces albus J1074]
 gi|291357350|gb|EFE84252.1| signal recognition particle [Streptomyces albus J1074]
          Length = 411

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 173/306 (56%), Gaps = 5/306 (1%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           +   + +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q++VE 
Sbjct: 107 TEGRLVRLRARLARSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVVPTQELVER 166

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP---FNWDFSHRPHVILVVGVNGVGKTT 126
           L  +         + L  +       L+    P      +    P V++VVGVNG GKTT
Sbjct: 167 LRERVRVLGTRTPQELRTLLREELLKLVATDAPRAVKTDNGLETPAVVMVVGVNGTGKTT 226

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
             GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++A++A 
Sbjct: 227 TTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAV 286

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATTGQN L
Sbjct: 287 KEGIAEHADVVLIDTAGRLHTKAGLMDELGKVKRVVEKQAP--LDEVLLVLDATTGQNGL 344

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF  + F
Sbjct: 345 VQARVFAEVVNITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFDPEAF 404

Query: 307 SAVITG 312
              + G
Sbjct: 405 VDALIG 410


>gi|242070027|ref|XP_002450290.1| hypothetical protein SORBIDRAFT_05g003290 [Sorghum bicolor]
 gi|241936133|gb|EES09278.1| hypothetical protein SORBIDRAFT_05g003290 [Sorghum bicolor]
          Length = 539

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/311 (25%), Positives = 140/311 (45%), Gaps = 27/311 (8%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KL+    D+++   + + +R+ +   L+ +D+ + V ++ V  
Sbjct: 70  RAEMFGQLTTGLESAWNKLRGV--DVLTKENIAEPMRD-IRRALLEADVSLPVVRRFVSS 126

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  K    +        Q+++  V + + +++        +  S  P VIL+        
Sbjct: 127 VSDKALGANAIRGVRPDQQLVKIVHDELVQLMGGEVSDLVFSKSG-PTVILLA------- 178

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
            T       ++   G   ML A D +R AAIDQL I   +           +    +   
Sbjct: 179 DTYT-----RVRLQGKSCMLVAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPTQITKN 233

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A ++A++K +D +++DTAGRL  +  +M  + ++ + +       P  VL V+DA TGQ 
Sbjct: 234 AMEEAKSKNIDAIVVDTAGRLQIDKSMMDELKEVKKAVN------PTEVLLVVDAMTGQE 287

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A   V  F+   G TG I+TK+DG +RGG  + +      P+ F+G GE + DLE F   
Sbjct: 288 AAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGERLEDLELFYPD 347

Query: 305 DFSAVITGCLD 315
             +  + G  D
Sbjct: 348 RMAQRVLGMGD 358


>gi|332295825|ref|YP_004437748.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332178928|gb|AEE14617.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 437

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 139/302 (46%), Gaps = 16/302 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            +  S K++          +L +     +  ++  L + SDI ++  +KIVEE+  +   
Sbjct: 2   LSDFSEKIQSLFKKFRGYGKLTEKEIGEICRDIRLLFLESDIALSATKKIVEEIKNRLST 61

Query: 77  KDVSVQRVL-YDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            + + +      VS ++ + L+ L  KP N DFS +P ++++VG+ G GKTT   K++  
Sbjct: 62  LEFTTETSPGTLVSNIVREELINLLGKPGNIDFSEKPTLVMMVGIQGSGKTTTSAKIANY 121

Query: 135 MSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            +     K +L   D  R AA  QL+  + +    F   +           A   A++K 
Sbjct: 122 FATKENKKPLLVGADVRRPAAQLQLEKLSQQIKIPFFTDKD---PFLACEGALNLARSKG 178

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D++I+DTAGR H +  L+  +  +    +  +       + V+D+  GQ A +  + F 
Sbjct: 179 YDLIIVDTAGRTHVDEELLDELKTLNERFQPKNN------ILVIDSMMGQEATKVAKAFF 232

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                TG I+TK DG ARGG    +     +P+ FLGVGE I +LE F        I G 
Sbjct: 233 NTIPLTGAILTKFDGDARGGAAFSLREVTGVPLIFLGVGEKIQNLEKFDPVRVVNRIVGM 292

Query: 314 LD 315
            D
Sbjct: 293 GD 294


>gi|284931538|gb|ADC31476.1| signal recognition particle protein Ffh [Mycoplasma gallisepticum
           str. F]
          Length = 451

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 78/313 (24%), Positives = 145/313 (46%), Gaps = 20/313 (6%)

Query: 14  IRKLTKGFASTSLKL-KEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVE 68
           +++L     S    +  + +   + ++ + +     V  E+   L+ +D+ + V +  ++
Sbjct: 1   MKRLINMLKSMISSIVTKSLKKRLLNQTIKEEDITEVLREIRIALLDADVNINVVKTFIK 60

Query: 69  ELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +  K   + V          L  + + +  +L    +P   D   +   I++VG+ G G
Sbjct: 61  AIKEKAIGQAVDRNTDVHAYFLKIIKDELVNILGKDQQPLKTD--KKLAKIMLVGLQGSG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT + KL+K ++    K  L  G D +R AAIDQL   A++ +  F  +E  SD    A
Sbjct: 119 KTTTVAKLAKFLNKQKQKNSLLVGLDVYRPAAIDQLNTLAEQINMPFY-NEGLSDPVKTA 177

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             + + A+ K  D++I DTAGRL  N  LM     ++ +   +DP     ++ V+D  +G
Sbjct: 178 KNSIEIAKEKNCDLIIYDTAGRLQTNVELMNE---LVNIRNTVDP---DEIILVVDGLSG 231

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q  +     F+     +G+I+TK+D  AR G  + +     +P+ F   GE ++ +E F 
Sbjct: 232 QEIINIATEFNNYLKLSGIIITKLDSDARAGAALSLRSILNVPIKFTTSGEKLDAIELFY 291

Query: 303 AKDFSAVITGCLD 315
            +  +  I G  D
Sbjct: 292 PERIADRILGFGD 304


>gi|124359738|gb|ABN06080.1| GTP-binding signal recognition particle SRP54, G-domain [Medicago
           truncatula]
          Length = 341

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/286 (30%), Positives = 144/286 (50%), Gaps = 18/286 (6%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KLK    ++++   + + +R+ +   L+ +D+ + V ++ V+ 
Sbjct: 64  RAEMFGQLTTGLESAWNKLKG--EEVLTKDNIVEPMRD-IRRALLEADVSLPVVRRFVQS 120

Query: 70  LLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +     V+      Q+++  V + + +++        +     P VIL+ G+ GVGK
Sbjct: 121 VTDQAVGVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTF-AKTGPTVILLAGLQGVGK 179

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TTV  KL+      G   ML AGD +R AAIDQL I   +       +      + +A +
Sbjct: 180 TTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQ 239

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
            F++A+ KK+DV+I+DTAGRL  +  +M  +  + RVL       P  VL V+DA TGQ 
Sbjct: 240 GFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLN------PTEVLLVVDAMTGQE 293

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           A   V  F+   G TG I+TK+DG +RGG  + +     +P  ++G
Sbjct: 294 AAALVTTFNLEIGITGAILTKLDGDSRGGAALSVK-ETMLP--YIG 336


>gi|253583750|ref|ZP_04860948.1| cell division protein ftsY [Fusobacterium varium ATCC 27725]
 gi|251834322|gb|EES62885.1| cell division protein ftsY [Fusobacterium varium ATCC 27725]
          Length = 356

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 107/278 (38%), Positives = 158/278 (56%), Gaps = 1/278 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVA 63
           K   ES  +   L      +   L   +   I+    +D  + EELED+LI+SDIG+ + 
Sbjct: 78  KKEGESKGFFTSLKDKLFKSREGLFGKLKSFILGRSVIDFEMYEELEDILIQSDIGMDMT 137

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            KIV  L  +   + +   + +Y V + + +  +            + +VILVVGVNGVG
Sbjct: 138 VKIVGALEKEVKKRGIKDPKDIYPVLKEVMEGFLIKEGNDIVIEDGKLNVILVVGVNGVG 197

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT IGKL+ K    G KV+L AGDTFR+AAI+QL+ WA R+ A+ V S  GSD  A+ +
Sbjct: 198 KTTTIGKLASKFIKDGKKVILGAGDTFRAAAIEQLEEWAKRSGAEIVKSTQGSDPGAVVF 257

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +    A+++  D+ IIDTAGRLHN + LM  + K+  ++K+      +  + V+D TTGQ
Sbjct: 258 DTLAAAESRGADIAIIDTAGRLHNKNNLMKELEKIHNIIKKKLGDQHYESILVIDGTTGQ 317

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           N L Q ++F+ V   TG I+TK+DGTA+GG +  I   
Sbjct: 318 NGLSQAKVFNEVTDLTGFIITKLDGTAKGGIVFSISEE 355


>gi|57237011|ref|YP_178813.1| signal recognition particle protein [Campylobacter jejuni RM1221]
 gi|148926674|ref|ZP_01810355.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|57165815|gb|AAW34594.1| signal recognition particle protein [Campylobacter jejuni RM1221]
 gi|145845193|gb|EDK22288.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|315058172|gb|ADT72501.1| Signal recognition particle, subunit Ffh SRP54 [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 445

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 142/300 (47%), Gaps = 9/300 (3%)

Query: 21  FASTSLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           F   S   K  I  +  +   +      E L+  L+++D+   V ++++  +        
Sbjct: 2   FELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHKVTKELLTLIEEDVKQNG 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +  ++ L  +   +  +L    K   + F S  P V+L+ G+ G GKTT   KL+  +  
Sbjct: 62  IGQKQFLNAIKVNLENILSVNGKNQGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKL 121

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++AA D  R AA++QL+   +    +    E   D   +A EA K+A++  VDVL
Sbjct: 122 RNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEKDPIRVAKEALKKAESSMVDVL 181

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  +  LM  +  +  VL       P  +  V DA +GQ+ ++    F+    
Sbjct: 182 LVDTAGRLAIDEALMNELKAVKDVLN------PDEIFYVADAMSGQDGVKTAASFNEALN 235

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            +G+I++K D   +GG  + I     IP+ F+GVGE + DLE F+     + I G  D  
Sbjct: 236 ISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADLEVFIPDRIVSRIMGEGDLA 295


>gi|167969549|ref|ZP_02551826.1| cell division protein ftsY [Mycobacterium tuberculosis H37Ra]
          Length = 422

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 166/307 (54%), Gaps = 5/307 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
                + +L    A +   L  G+  +I    LD+   +++ED L+ +D+G A    +V 
Sbjct: 118 PPEGRLERLRGRLARSQNALGRGLLGLIGGGDLDEDSWQDVEDTLLVADLGPAATASVVS 177

Query: 69  ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGKT 125
           +L ++  + +V  +     V  +++   L P           +  P V+LVVGV+G GKT
Sbjct: 178 QLRSRLASGNVRTEADARAVLRDVLINELQPGMDRSIRALPHAGHPSVLLVVGVHGTGKT 237

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A  V    G+D A++A++A
Sbjct: 238 TTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAARVGAAVVRGPEGADPASVAFDA 297

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +  A   DV++IDTAGRLH    LM  + K+ RV+ R        VL VLDAT GQN 
Sbjct: 298 VDKGIAAGADVVLIDTAGRLHTKVGLMDELDKVKRVVTRRAS--VDEVLLVLDATIGQNG 355

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q  +F  V   +G ++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    
Sbjct: 356 LAQARVFAEVVDISGAVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGEGPDDLAPFEPAA 415

Query: 306 FSAVITG 312
           F   + G
Sbjct: 416 FVDALLG 422


>gi|323448576|gb|EGB04473.1| hypothetical protein AURANDRAFT_32555 [Aureococcus anophagefferens]
          Length = 418

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 109/336 (32%), Positives = 164/336 (48%), Gaps = 29/336 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSR---RLDDGVREELEDLLIRSDIGV 60
           ++ A +    + K T G   +  +  + +  I        LDD V + LED L+ +DIG 
Sbjct: 18  EQKAKDDALALAKFTAGLEKSRDQFGKDLKAIFGGAAGANLDDTV-DALEDALLSADIGA 76

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           A    I+E++     A+    +  +   +   + + L              P VILV+G 
Sbjct: 77  ATTTTILEDVRAVAEARGEYAEADVTAILRGRMAETLTKAGDGALRKAPAGPTVILVIGA 136

Query: 120 NGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSD 177
           NG+GKTT IGKL++++   G  +V+LAA DTFR+AA+ QL  WA R + D V  +     
Sbjct: 137 NGMGKTTTIGKLARRLRVEGGQRVLLAACDTFRAAAVGQLDEWAKRAAVDIVVPDAGVES 196

Query: 178 AAALAYEAFK----------------------QAQAKKVDVLIIDTAGRLHNNSILMAGI 215
            +A  Y+A                         A A   DVLI+DT+GRL NN+ L   +
Sbjct: 197 PSAACYKALDVALGVAAVDESFRHSDLADDDVDAPAGPYDVLIVDTSGRLSNNAALNEEL 256

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K+ R + +  P APH  L V+DA  G+NA+     + A  G +GL +TK+DGTAR G +
Sbjct: 257 KKIRRTIDKRAPGAPHDTLLVVDAAVGRNAVDMARAWQADVGVSGLAVTKLDGTARAGFV 316

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +V    IPV  +GVGE ++DL  F    F   + 
Sbjct: 317 VSVVEDLGIPVKLVGVGEALDDLRDFDVDAFLDSLL 352


>gi|153952174|ref|YP_001398346.1| signal recognition particle protein [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939620|gb|ABS44361.1| signal recognition particle protein [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 445

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 143/300 (47%), Gaps = 9/300 (3%)

Query: 21  FASTSLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           F   S   K  I  +  +   +      E L+  L+++D+   V ++++  +        
Sbjct: 2   FELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHKVTKELLTLIEEDAKQNG 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +  ++ L  +   +  +L    K  ++ F S  P V+L+ G+ G GKTT   KL+  +  
Sbjct: 62  IGQKQFLNAIKINLENILSVNGKNQSFVFASKPPTVVLMTGLQGGGKTTSTIKLANYLKL 121

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++AA D  R AA++QL+   +    +    E   D   +A EA K+A++  VDVL
Sbjct: 122 RNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEKDPIRVAKEALKKAESSMVDVL 181

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  +  LM  +  +  VL       P  +  V DA +GQ+ ++    F+    
Sbjct: 182 LVDTAGRLAIDEALMNELKAVKDVLN------PDEIFYVADAMSGQDGVKTAASFNEALN 235

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            +G+I++K D   +GG  + I     IP+ F+GVGE + DLE F+     + I G  D  
Sbjct: 236 ISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADLEVFIPDRIVSRIMGEGDLA 295


>gi|86151630|ref|ZP_01069844.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86153420|ref|ZP_01071624.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613116|ref|YP_001000405.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005347|ref|ZP_02271105.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85841259|gb|EAQ58507.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85843146|gb|EAQ60357.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249374|gb|EAQ72334.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 445

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/300 (28%), Positives = 144/300 (48%), Gaps = 9/300 (3%)

Query: 21  FASTSLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           F   S   K  I  +  +   +      E L+  L+++D+   V ++++  +        
Sbjct: 2   FELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHKVTKELLTLIEEDVKQNG 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +  ++ L  +   +  +L    K   + F S  P V+L+ G+ G GKTT   KL+  +  
Sbjct: 62  IGQKQFLNAIKVNLENILSVNGKNQGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKL 121

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++AA D  R AA++QL+   +    +    E   D   +A EA K+A++  VDVL
Sbjct: 122 RNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEKDPIRVAKEALKKAESSMVDVL 181

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  +  LM  +  +  VL       P  +  V DA +GQ+ ++    F+ V G
Sbjct: 182 LVDTAGRLAIDEALMNELKVVKDVLN------PDEIFYVADAMSGQDGVKTAASFNEVLG 235

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            +G+I++K D   +GG  + I     IP+ F+GVGE + DLE F+     + I G  D  
Sbjct: 236 ISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADLEVFIPDRIVSRIMGEGDLA 295


>gi|157414996|ref|YP_001482252.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385960|gb|ABV52275.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747634|gb|ADN90904.1| Signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931910|gb|EFV10865.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 445

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 142/300 (47%), Gaps = 9/300 (3%)

Query: 21  FASTSLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           F   S   K  I  +  +   +      E L+  L+++D+   V ++++  +        
Sbjct: 2   FELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHKVTKELLTLIEEDVKQNG 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +  ++ L  +   +  +L    K   + F S  P V+L+ G+ G GKTT   KL+  +  
Sbjct: 62  IGQKQFLNAIKVNLENILSVNGKNQGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKL 121

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++AA D  R AA++QL+   +    +    E   D   +A EA K+A++  VDVL
Sbjct: 122 RNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEKDPIRVAKEALKKAESSMVDVL 181

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  +  LM  +  +  VL       P  +  V DA +GQ+ ++    F+    
Sbjct: 182 LVDTAGRLAIDEALMNELKAVKDVLN------PDEIFYVADAMSGQDGVKTAASFNEALN 235

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            +G+I++K D   +GG  + I     IP+ F+GVGE + DLE F+     + I G  D  
Sbjct: 236 ISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADLEVFIPDRIVSRIMGEGDLA 295


>gi|291165577|gb|EFE27626.1| signal recognition particle-docking protein FtsY [Filifactor alocis
           ATCC 35896]
          Length = 429

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 120/304 (39%), Positives = 187/304 (61%), Gaps = 2/304 (0%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              +  +L +G + T+  +   I  ++ +  ++D+ + EELE++LI SD+G     +IV+
Sbjct: 126 KRGFFARLKEGLSKTTQNITGKIDQMLGNYTKIDEDMLEELEEILITSDVGYETTVEIVD 185

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            L      K +     +    +L+ + ++  ++  +      P +++VVGVNGVGKTT I
Sbjct: 186 RLRQNLKEKLIDNPAQVKPELKLVIESMLQENQE-SLRIEESPSILVVVGVNGVGKTTSI 244

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL+ +M   G  V+LAA DTFR+AA DQL IWA+R   D V  + G+D +A+ ++    
Sbjct: 245 GKLAHQMKGQGKSVLLAAADTFRAAAADQLTIWAERAGVDIVKHQEGADPSAVIFDGIHA 304

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+ + +DVLI DTAGRLHN   LM  +GK+ ++++R    A   VL V+DATTGQNA+ Q
Sbjct: 305 AKKRNIDVLICDTAGRLHNRKNLMQELGKIFKIVEREYLEANKEVLLVIDATTGQNAMNQ 364

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            ++F  VA  +G+I+TK+DGTA+GG ++ I    KIPV F+GVGE I+DL+ F A  F+ 
Sbjct: 365 AKVFQEVAPLSGIILTKLDGTAKGGVVLAITQELKIPVKFIGVGEQIDDLQMFDASSFAE 424

Query: 309 VITG 312
            + G
Sbjct: 425 AMIG 428


>gi|300871820|ref|YP_003786693.1| signal recognition particle receptor FtsY [Brachyspira pilosicoli
           95/1000]
 gi|300689521|gb|ADK32192.1| signal recognition particle receptor, FtsY [Brachyspira pilosicoli
           95/1000]
          Length = 319

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/276 (32%), Positives = 147/276 (53%), Gaps = 7/276 (2%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
           +   ++D     LE++LI +D GV   + I+ +L      +++       +V + + ++L
Sbjct: 49  NKSSINDEFFASLENMLITADAGVETTKDIISKLRDIVEKENIKDS---SEVKKHLREIL 105

Query: 97  MPLSKPFNWDFSHRPHVILV-VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
             +SK  N     +   IL  VGVNGVGKTT I KL+  +     K++LAA DTFR+AAI
Sbjct: 106 --ISKFINKKIELKEKNILFIVGVNGVGKTTSIAKLANILK-QDHKIILAASDTFRAAAI 162

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+ WA+R S   V  +   D A++ + A  +A+A   D++I+DTAGR HN   L+  +
Sbjct: 163 EQLEEWANRLSVTIVKGQQAGDPASVLFSALDKAKATNADIVIVDTAGRFHNQDNLVKQL 222

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            KM ++            + VLDA  G N + Q ++F       G I++K+D +A+GG  
Sbjct: 223 EKMKKIATERFSEFNFVPILVLDANVGHNGIEQAKVFTNALNIQGAIVSKLDSSAKGGVA 282

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           I +     +P+Y+ G GE + D   F A++F   I 
Sbjct: 283 ISVAHYLSLPIYYGGFGEKVEDFREFNAEEFIDSIL 318


>gi|82705448|ref|XP_726974.1| signal recognition particle protein SRP54 [Plasmodium yoelii yoelii
           str. 17XNL]
 gi|23482603|gb|EAA18539.1| signal recognition particle protein SRP54 [Plasmodium yoelii
           yoelii]
          Length = 500

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 130/307 (42%), Gaps = 18/307 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLT---- 72
                 +L   +  I ++   DD V EE    +   LI +DI V   + I   +      
Sbjct: 3   LTELGAQLTSALQKIQAAPVADDNVIEECLKEIVRALILADINVIYLKDIKSNIKKNIEK 62

Query: 73  --KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
               Y  +       Y V ELI   L+   K          +VIL VG+ G GKTT   K
Sbjct: 63  NAAAYGNNKKRLVQKYVVEELIK--LLEGKKESYVPKKGERNVILFVGLQGSGKTTTCTK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A +      
Sbjct: 121 YAHYYQKKGFKTALICADTFRAGAFDQLKQNAAKVKIPFYGSYSEVDPVKIATDGVNTFL 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K D++I+D++GR    + L   + ++   +K      P  ++ V+D+  GQ+   Q  
Sbjct: 181 KDKYDLIIVDSSGRHKQENDLFEEMKQVENSIK------PEEIVFVIDSHIGQSCHDQAM 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TK+DG A+GGG +  V     P+ F+G GE +ND E F AK F + +
Sbjct: 235 AFKNSVKVGSIIITKIDGHAKGGGALSAVSAIGCPITFIGTGEHVNDFEKFEAKSFVSRL 294

Query: 311 TGCLDYG 317
            G  D  
Sbjct: 295 LGLGDID 301


>gi|294631634|ref|ZP_06710194.1| signal recognition particle FtsY [Streptomyces sp. e14]
 gi|292834967|gb|EFF93316.1| signal recognition particle FtsY [Streptomyces sp. e14]
          Length = 410

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 176/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q
Sbjct: 101 EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEETWEEIEDTLLTADVGVQPTQ 160

Query: 65  KIVEELLTKRY--AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
           ++VE L  +          +       EL+  +   + +    +    +P +++VVGVNG
Sbjct: 161 ELVERLRERVRVLGTRTPAELRTLLREELLTLVGTDVDRTVRTEPDGRKPGIVMVVGVNG 220

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V      D A++
Sbjct: 221 TGKTTTTGKLARVLVADGRTVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEAGDPASV 280

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+ +   VDV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 281 AFDAVKEGKEMGVDVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAP--LDEVLLVLDATT 338

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   +G+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 339 GQNGLVQARVFAEVVDISGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPF 398

Query: 302 VAKDFSAVITG 312
             + F   + G
Sbjct: 399 EPEAFVDALIG 409


>gi|300706383|ref|XP_002995462.1| hypothetical protein NCER_101628 [Nosema ceranae BRL01]
 gi|239604578|gb|EEQ81791.1| hypothetical protein NCER_101628 [Nosema ceranae BRL01]
          Length = 466

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 136/299 (45%), Gaps = 13/299 (4%)

Query: 24  TSLKLKEGITDIISSRRLDDGVR---EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
               +   ++ + SS   DD ++   +++   LI S++   + +KI   L  K  ++++ 
Sbjct: 5   LGKSITASLSRLFSSNITDDSIKYIIDDICTSLINSNVNPMLVEKIRNNLNEKILSENIQ 64

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
                  +   +   L+ L  P          + +V++ VG+ G GKTT I K +     
Sbjct: 65  GFNKQKVIETAVFNELVSLVDPKIKSKELEKGKSNVVVFVGLQGAGKTTSICKYANYYKK 124

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            GLKV L   DTFR+ A +Q+K  A +    F  SE       +A E   + + +  D++
Sbjct: 125 KGLKVALVCADTFRAGAFEQIKQNAMKIKVPFYGSEEAD-PVVVALEGVSRFKKEDFDLI 183

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
            +DT+GR      L   +  +I  +       P +++ V+DA  GQ+A  Q   F     
Sbjct: 184 CVDTSGRHTQEKDLFTEMTDIINAVT------PDNIIFVMDAGIGQSAEDQALGFKNAVN 237

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
              +I++K+DGT + GG I  V + + P+ F+G GE + D E F  K F   + G  D 
Sbjct: 238 VGSIIISKIDGTVKAGGAISSVASIQCPILFVGTGENMEDFEVFEPKGFVGRMLGMGDL 296


>gi|84683446|ref|ZP_01011349.1| signal recognition particle protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84668189|gb|EAQ14656.1| signal recognition particle protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 501

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L      +     L +        E+   L+ +D+ + VA+  V  +  K   
Sbjct: 2   FESLSDRLSGVFDRLTKQGALSEDDVKTALREVRVALLEADVSLPVARDFVRAVQDKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L     P      + P  IL+VG+ G GKTT  GKL
Sbjct: 62  QAVTKSVTPGQQVVKIVHDELVAVLTGAEDPGKLKIDNAPAPILMVGLQGGGKTTTTGKL 121

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++      +V++A+ D +R AA+ QL++   +   D +    G     +A  A +QA 
Sbjct: 122 AKRLKERENKRVLMASLDVYRPAAMHQLEVLGGQIGVDVLPIVEGQKPVDIAKRAKQQAT 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  + +LM  +  + + +       P   L V+D  TGQ A+   E
Sbjct: 182 MGGYDVYLLDTAGRLQIDEVLMQEVEDVSKAVN------PRETLLVVDGLTGQVAVEVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F A  G +G+++T+MDG  RGG  + +      P+ F+GVGE ++ LE F     +  I
Sbjct: 236 EFDAKVGISGVVLTRMDGDGRGGAALSMRAVTGKPIRFVGVGEKLDALETFEPDRIAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|329910207|ref|ZP_08275253.1| Signal recognition particle receptor protein FtsY (alpha subunit)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546237|gb|EGF31273.1| Signal recognition particle receptor protein FtsY (alpha subunit)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 220

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 109/218 (50%), Positives = 142/218 (65%), Gaps = 2/218 (0%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           ML PL KP      H+P V+++ GVNG GKTT IGKL+K +      V+LAAGDTFR+AA
Sbjct: 1   MLSPLQKPLELG-RHQPLVMMITGVNGAGKTTTIGKLAKHLQANRQSVLLAAGDTFRAAA 59

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
            +QL IW +R +   +  E   D AA+A++A   A AKK +V++IDTAGRL     LM  
Sbjct: 60  REQLTIWGERNNVAVIAQE-SGDPAAVAFDAVHSAMAKKTNVVMIDTAGRLPTQLHLMEE 118

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K+ RV+ +  P APH +L V+D  TGQNAL QV+ F    G TGL++TK+DGTA+GG 
Sbjct: 119 LKKIKRVIAKAMPSAPHEILLVIDGNTGQNALMQVKAFDDALGLTGLVVTKLDGTAKGGV 178

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           L  I  T  IPVYF+GVGE I DL+PF A +F   + G
Sbjct: 179 LAAIARTRPIPVYFIGVGEQIEDLQPFNADEFVTALLG 216


>gi|85057345|ref|YP_456261.1| signal recognition particle, subunit FFH/SRP54 [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|84789450|gb|ABC65182.1| signal recognition particle, subunit FFH/SRP54 [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 456

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 147/302 (48%), Gaps = 17/302 (5%)

Query: 24  TSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
               L++ I  I   + L+      + ++++  L+ SD+ + V  K  E +  K   ++V
Sbjct: 4   LGEGLQKVINKIRGKKILEQQDIQNIMQDIKVSLVESDVHLQVIDKFNEIIEKKTLKQEV 63

Query: 80  -----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                + + ++  V++ + ++L        +  +   + ++++G+ G GKTT  GKL+  
Sbjct: 64  LKGLNNKEHIIKIVNKTLIQILGSTRVDLTFKPNCNLNTLMLIGLQGSGKTTTAGKLALW 123

Query: 135 MSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +      KV+L A D +R  AI+QLK+   + + D   S++ +D   +     K A  + 
Sbjct: 124 LRKKNSKKVLLVACDIYRPGAIEQLKVIGKQINIDVF-SKLDADVLDIVDAGLKHASQEG 182

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D +IIDTAGRL  +  +M  + ++     + DP     +L V+D  +GQ +    + FH
Sbjct: 183 YDAVIIDTAGRLDTDETMMQELQQIKA---KADPS---EILLVVDCLSGQQSANTAQSFH 236

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
              G TG+I+TKMD   +GG  + +     +P+ F+   E I+ LEPF     ++ + G 
Sbjct: 237 NQLGATGVILTKMDADTKGGAALSVRAMTDLPLKFVSSSEKIDSLEPFNPDRMASRLLGM 296

Query: 314 LD 315
            D
Sbjct: 297 GD 298


>gi|240047379|ref|YP_002960767.1| Cell division protein ftsY [Mycoplasma conjunctivae HRC/581]
 gi|239984951|emb|CAT04944.1| Cell division protein ftsY [Mycoplasma conjunctivae]
          Length = 338

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 111/318 (34%), Positives = 174/318 (54%), Gaps = 10/318 (3%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
             +K +      + K   G   +SL   + + ++     ++D+   EELE++LI SDI  
Sbjct: 15  KEEKDSKIKNDNVDKYVAGLTKSSLSFSKQMIELNKRFNKVDEEYFEELEEILIMSDISP 74

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV----SELIHKMLMPLSKPFNWDFSHRPHVILV 116
              Q I+ EL  +   ++++   ++ ++       I+     ++   N       +VILV
Sbjct: 75  DFVQIIISELKREVRNQNLTNSELIPELIVDKMYTIYANRSLINTNLNIKDDQI-NVILV 133

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIG 175
           VGVNG GKTT I K++ K+   G K ++ A DTFR+AA++QL+IWA+R  AD +   E  
Sbjct: 134 VGVNGSGKTTSISKIAHKLIQEGKKTLIVAADTFRAAAVEQLEIWANRVGADILKPYENE 193

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D  ++ Y   ++   +K DV+IIDTAGRL N   LM  + K+ +++    P APH  L 
Sbjct: 194 QDPGSVVYRGVQKGIDEKFDVVIIDTAGRLQNKINLMNELKKINKIISEKIPGAPHESLL 253

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DATTGQN + Q + F  V   +G+++TKMDGT++GG +  I     I V  +G+GE I
Sbjct: 254 VIDATTGQNGVSQAKHFSDVTQISGIVLTKMDGTSKGGIVFSIKDQLDIDVKLVGLGEKI 313

Query: 296 NDLEPFVAKDFSAVITGC 313
           +DL+PF    F   I G 
Sbjct: 314 DDLQPFDLDSF---IYGM 328


>gi|86149828|ref|ZP_01068057.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597147|ref|ZP_01100383.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562348|ref|YP_002344127.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839646|gb|EAQ56906.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190836|gb|EAQ94809.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360054|emb|CAL34846.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315926824|gb|EFV06198.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929637|gb|EFV08818.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 445

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/300 (28%), Positives = 144/300 (48%), Gaps = 9/300 (3%)

Query: 21  FASTSLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           F   S   K  I  +  +   +      E L+  L+++D+   V ++++  +        
Sbjct: 2   FELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHKVTKELLTLIEEDAKQNG 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +  ++ L  +   +  +L    K   + F S  P V+L+ G+ G GKTT   KL+  +  
Sbjct: 62  IGQKQFLNAIKINLENILSVNGKNQGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKL 121

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++AA D  R AA++QL+   +    +    E   D   +A EA K+A++  VDVL
Sbjct: 122 RNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEKDPIRVAKEALKKAESSMVDVL 181

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  +  LM  +  +  VL       P  +  V DA +GQ+ ++    F+ V G
Sbjct: 182 LVDTAGRLAIDEALMDELRAVKDVLN------PDEIFYVADAMSGQDGVKTAASFNEVLG 235

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            +G+I++K D   +GG  + I     IP+ F+GVGE + DLE F+     + I G  D  
Sbjct: 236 ISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADLEVFIPDRIVSRIMGEGDLA 295


>gi|237801083|ref|ZP_04589544.1| signal recognition particle protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023940|gb|EGI03997.1| signal recognition particle protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 361

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 109/207 (52%), Gaps = 7/207 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSAD 168
            P VIL+ G+ G GKTT  GKL++ + +   K ++    D +R AAI QL+  A+     
Sbjct: 2   PPAVILMAGLQGAGKTTTAGKLARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVT 61

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F  S+I      +A  A K+A+ K +DV+I+DTAGRLH +  +M  I  +    K     
Sbjct: 62  FFASDISQKPVEIAQAAIKEAKLKFIDVVIVDTAGRLHVDVEMMGEIQALHAATKPA--- 118

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
                L V+DA TGQ+A    + F      TG+I+TK+DG ARGG  + +      P+ F
Sbjct: 119 ---ETLFVVDAMTGQDAANTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKF 175

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G+GE    LEPF     ++ I G  D
Sbjct: 176 IGMGEKSEALEPFHPDRIASRILGMGD 202


>gi|115377135|ref|ZP_01464349.1| signal recognition particle [Stigmatella aurantiaca DW4/3-1]
 gi|115365844|gb|EAU64865.1| signal recognition particle [Stigmatella aurantiaca DW4/3-1]
          Length = 481

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 77/245 (31%), Positives = 119/245 (48%), Gaps = 7/245 (2%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + +  K       +    + +  ++ P+          +   I++VG+ G GKTT  GK
Sbjct: 8   KSGQKRKVSPADYFVKVCHDELEALMGPVDTSLKLKPRGQLSGIMMVGLQGSGKTTTTGK 67

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+ ++   G K +L A D +R AA+DQLK+  +R        E G     LA   +  A+
Sbjct: 68  LANRLLQEGRKPLLVAADIYRPAAVDQLKVLGERLKVPVY-FEPGVAPPELAVRGYAAAR 126

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +K DV++IDTAGRL  +  LMA +  +   +       P ++L V DA  GQ+A+R   
Sbjct: 127 EQKCDVVLIDTAGRLAIDESLMAELESIKGNVH------PDNILLVCDAMIGQDAVRTAA 180

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F       G I+TK+DG ARGG  + I      P+ FLG+GE ++ LE F  +  +  I
Sbjct: 181 EFDRRLTLDGFILTKLDGDARGGAALSIKEVTGKPIKFLGMGESMDKLEEFRPEGLAGRI 240

Query: 311 TGCLD 315
            G  D
Sbjct: 241 LGFGD 245


>gi|297191803|ref|ZP_06909201.1| signal recognition particle [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151075|gb|EFH30947.1| signal recognition particle [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 407

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 175/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++   +   + +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 98  EIPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQ 157

Query: 65  KIVEELLTKRY--AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
           ++VE L  +          Q       EL+  +     +    +     P V++VVGVNG
Sbjct: 158 ELVERLRERVKVLGTRTPEQLRTLLREELLLLVGTEFDRAVKTESGLETPAVVMVVGVNG 217

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V      D A++
Sbjct: 218 TGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEAGDPASV 277

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A+++ K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 278 AFDSVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGP--LDEVLLVLDATT 335

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF
Sbjct: 336 GQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPF 395

Query: 302 VAKDFSAVITG 312
             + F   + G
Sbjct: 396 EPEAFVDALIG 406


>gi|300870909|ref|YP_003785780.1| signal recognition particle GTPase [Brachyspira pilosicoli 95/1000]
 gi|300688608|gb|ADK31279.1| signal recognition particle GTPase [Brachyspira pilosicoli 95/1000]
          Length = 451

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 140/308 (45%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LTK  ++   KL++    ++S + ++D +   +++ L+ +D+ +  A K +EE   
Sbjct: 1   MFDNLTKSISNVFSKLRD--KKVLSEKDIEDTLI-GIKEALLSADVSLEAADKFLEEAKK 57

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +   K+         + + DV + +  M+         +   +  V L+ G+ G GKTT 
Sbjct: 58  RAIGKERLENVDPANQFVADVHDTLVSMIGEGESGLKLEPVEKTTVTLLFGLQGSGKTTT 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+K   D   +V L   D  R AA++QL + A                  +   A  
Sbjct: 118 SAKLAKYYKDK-RRVFLVGLDVHRPAAMEQLAVLAKEVGVPCHIDTKEKKPYKILKRAMS 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ ++ +++I+DTAGRL  +  +M     + RV+  +D       L V+D+T GQ+   
Sbjct: 177 IAKKEQYNMIIVDTAGRLEIDEEMMLE---LRRVVNSVDVT---EKLLVVDSTAGQSVFD 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F +  G  G+I+TK D   RGG  + +       V F+G GE + D++ F AK  +
Sbjct: 231 VAKSFQSNIGINGVILTKFDSGVRGGAALSLRYATGSSVKFIGTGEHLEDIDVFDAKRVA 290

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 291 GQILGMGD 298


>gi|256384103|gb|ACU78673.1| peptidase, M41 family [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384935|gb|ACU79504.1| peptidase, M41 family [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455878|gb|ADH22113.1| peptidase, M41 family [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 409

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 182/306 (59%), Gaps = 10/306 (3%)

Query: 23  STSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
            ++    + I  +    ++ DD   EELED+LI++D+G+ +  K V  L+ K+  +D S 
Sbjct: 102 KSAFNFSKDIKKLSKKYKQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSF 160

Query: 82  QRVLYDVSELIHKMLMP---LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +   + E +++        +K +  DF  +R ++ ++VGVNG GKTT + K++   ++
Sbjct: 161 ENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE 220

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWAD---RTSADFVC-SEIGSDAAALAYEAFKQAQAKK 193
            G KV++AA DTFR+ A  QL+ W         D V  +++ +D A++ ++A K+A+ + 
Sbjct: 221 LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKTNKLNADPASVVFDAIKKAKEQN 280

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+L+IDTAGRL N + LMA + KM +++++++  APH VL V+DATTGQN + Q E F 
Sbjct: 281 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFS 340

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            VA  +G+I+TKMD T++GG  + I     IP+  +GVGE ++DL  F    +   ++  
Sbjct: 341 KVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSSG 400

Query: 314 LDYGEE 319
              G+E
Sbjct: 401 FMQGDE 406


>gi|223042041|ref|ZP_03612218.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus minor 202]
 gi|223017158|gb|EEF15593.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus minor 202]
          Length = 362

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 81/207 (39%), Positives = 113/207 (54%), Gaps = 7/207 (3%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            P VIL+ G+ G GKTT +GKL+K + +    KV++ + D +R AAI QL+  A+    D
Sbjct: 1   PPAVILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVD 60

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F  +E       +A  A K A+    DVLI+DTAGRLH +  +M  I ++  VL      
Sbjct: 61  FFPTETSQKPVEIAEVALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLN----- 115

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   L  +DA TGQ+A    + F+     TG+I+TK+DG ARGG  + I      P+ F
Sbjct: 116 -PIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKF 174

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           LGVGE  + LEPF     ++ I G  D
Sbjct: 175 LGVGEKTDALEPFHPDRIASRILGMGD 201


>gi|261402774|ref|YP_003246998.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus vulcanius M7]
 gi|261369767|gb|ACX72516.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus vulcanius M7]
          Length = 377

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 97/321 (30%), Positives = 170/321 (52%), Gaps = 22/321 (6%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDIGVA 61
           ++    + +S+  +        +  +K+ I  +I+      + + EELE  L+ +D+ + 
Sbjct: 56  DEHKKEKKISFFDRF-----GLTRAIKKAIKKEIVILEDDIEDILEELEIELLEADVALD 110

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV---------SELIHKMLMPLSKPFNWDFSH-RP 111
           V +K++E +  +   + ++    + ++           ++ +  + L +    + +  +P
Sbjct: 111 VVEKLIENIKKELVGRKITPDDDVEEITINAIRTAIKNILSQKKIDLEEIIKANKAKGKP 170

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI+ VG+NG GKTT I KL+ K+   G  V+LAAGDTFR+ AI+QL+  A       + 
Sbjct: 171 TVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDTFRAGAIEQLEQHAKNIGVKVIK 230

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            + G+D+AA+ Y+A + A+A+ +DV++ DTAGR   N+ LM  I K++RV K      P 
Sbjct: 231 HKQGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNANLMEEIKKVVRVTK------PD 284

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V+ V DA TG +A+ Q E F+      G+I+TK+D  A+GG  + I      P+ +LGV
Sbjct: 285 LVIFVGDALTGNDAVYQAEEFNRAVNIDGIILTKVDADAKGGAALSIGYAIGKPILYLGV 344

Query: 292 GEGINDLEPFVAKDFSAVITG 312
           G+  +DL  F A      + G
Sbjct: 345 GQRYSDLVEFNADWMVKKLFG 365


>gi|68072789|ref|XP_678308.1| signal recognition particle 54 kDa protein [Plasmodium berghei
           strain ANKA]
 gi|56498733|emb|CAH96838.1| signal recognition particle 54 kDa protein, putative [Plasmodium
           berghei]
          Length = 500

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 130/307 (42%), Gaps = 18/307 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLT---- 72
                 +L   +  I ++   DD +     +E+   LI +DI V   + I   +      
Sbjct: 3   LTELGAQLTNALQKIQAAPVADDNIIEECLKEIIRALILADINVIYLKDIKSNIKKNIEK 62

Query: 73  --KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
               Y  +       Y V ELI   L+   K          +VIL VG+ G GKTT   K
Sbjct: 63  NAAAYGNNKKRLVQKYVVEELIK--LLEGKKESYVPKKGDRNVILFVGLQGSGKTTTCTK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A +      
Sbjct: 121 YAHYYQKKGFKTALICADTFRAGAFDQLKQNAAKVKIPFYGSYSEVDPVKIATDGVNAFL 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K D++I+D++GR    + L   + ++   +K      P  ++ V+D+  GQ+   Q  
Sbjct: 181 KDKYDLIIVDSSGRHKQENDLFEEMKQVESSIK------PEEIVFVIDSHIGQSCHDQAM 234

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TK+DG A+GGG +  V     P+ F+G GE +ND E F AK F + +
Sbjct: 235 AFKNSVKVGSIIITKIDGHAKGGGALSAVSAIGCPITFIGTGEHVNDFEKFEAKSFVSRL 294

Query: 311 TGCLDYG 317
            G  D  
Sbjct: 295 LGLGDID 301


>gi|123492715|ref|XP_001326126.1| SRP54-type protein [Trichomonas vaginalis G3]
 gi|121909036|gb|EAY13903.1| SRP54-type protein, putative [Trichomonas vaginalis G3]
          Length = 494

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 127/306 (41%), Gaps = 16/306 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 KL   I  +  S+ +D+ V      E+   LI +D    +       L      
Sbjct: 2   LQDLGEKLMGSIKKLSESKTIDEKVYVTFMAEVAKSLIAADCSKEIVFDFSRRLKDSINF 61

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K++     +  V E      + K++ P   P         ++ ++VG+ G GKTT + KL
Sbjct: 62  KEIPPGLSIRRVIEKAVFNELVKLIDPGI-PAYKPQKKMLNIFMMVGLQGAGKTTTVTKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        +  + A DTFR+ A +QL   A      +       D    A +  ++ + 
Sbjct: 121 ANFYKRRNWRTGVIAADTFRAGAREQLMQNAQTARIPYFVDFTEQDPVQAALKGIEKFRK 180

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            K +++IIDT+GR      L A +  +   +       PH ++ V+D T GQ A  Q   
Sbjct: 181 DKYEIVIIDTSGRHMQEEALFAEMKALAAAVN------PHEIIFVMDGTIGQAAYDQALG 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G   +I+TK+D  A+GGG +  V     P+ F+G GE   DLE F    F + + 
Sbjct: 235 FKNAVGVGSIIITKLDSNAKGGGALSAVAATNSPISFIGSGEQFTDLEWFDPNSFVSRLL 294

Query: 312 GCLDYG 317
           G  D G
Sbjct: 295 GIQDPG 300


>gi|83319748|ref|YP_424455.1| signal recognition particle-docking protein FtsY [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|83283634|gb|ABC01566.1| signal recognition particle-docking protein FtsY [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 424

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 181/306 (59%), Gaps = 10/306 (3%)

Query: 23  STSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
            ++    + I  +    ++ DD   EELED+LI++D+G+ +  K V  L+ K+  +D S 
Sbjct: 117 KSAFNFSKDIKKLSKKYKQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSF 175

Query: 82  QRVLYDVSELIHKMLMP---LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +   + E +++        +K +  DF  +R +V ++VGVNG GKTT + K++   ++
Sbjct: 176 ENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNVFMLVGVNGTGKTTSLAKMANYYAE 235

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKK 193
            G KV++AA DTFR+ A  QL+ W         D V  +++ +D A++ ++A K+A+ + 
Sbjct: 236 LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQN 295

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+L+IDTAGRL N   LMA + KM +++++++  APH VL V+DATTGQN + Q E F 
Sbjct: 296 YDLLLIDTAGRLQNKVNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFS 355

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            VA  +G+I+TKMD T++GG  + I     IP+  +GVGE ++DL  F    +   ++  
Sbjct: 356 KVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSSG 415

Query: 314 LDYGEE 319
              G+E
Sbjct: 416 FMQGDE 421


>gi|29829196|ref|NP_823830.1| signal recognition particle [Streptomyces avermitilis MA-4680]
 gi|29606302|dbj|BAC70365.1| putative signal recognition particle receptor [Streptomyces
           avermitilis MA-4680]
          Length = 409

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 176/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q
Sbjct: 100 EVPEPTAGRLVRLRTRLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQ 159

Query: 65  KIVEELLTKRY--AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
           ++VE L  +          +       EL+  ++    +    D +   P +++VVGVNG
Sbjct: 160 ELVERLRERVKVLGTRTPQELRGLLREELLQLLVPEFDREVRTDSNLDTPGIVMVVGVNG 219

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 220 TGKTTTTGKLARVLVADGKHVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 279

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+   +  DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 280 AFDAVKEGIEEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAP--LDEVLLVLDATT 337

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 338 GQNGLVQARVFAEVVNITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPF 397

Query: 302 VAKDFSAVITG 312
             + F   + G
Sbjct: 398 EPEAFVDALVG 408


>gi|88658536|ref|YP_507291.1| signal recognition particle protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88599993|gb|ABD45462.1| signal recognition particle protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 448

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 152/308 (49%), Gaps = 16/308 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT    +   K++     +ISS   D  + EE++  L+ +D+ +AV +  +  +  
Sbjct: 1   MFESLTSSLTNVIQKMQS--KHVISSEDFDAAM-EEVKVALLEADVSLAVVKDFISNVKE 57

Query: 73  KRYAKD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K          +  Q ++  + + + ++L   S+    D S    VI++VG+ GVGKTT 
Sbjct: 58  KIVGGTTVKGVLPTQMIIKKIQDCLIEVLG--SEKCELDISKPLSVIMMVGLQGVGKTTT 115

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+ K+ +   +V++A+ D +R AA  QL+I   +     +          +   A  
Sbjct: 116 TAKLALKLKNKKKEVVMASLDVYRPAAQKQLEILGKQIDVQTLPIIENQAPIDIVKRAMD 175

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            AQ    DVLI+DTAGRLH + ++M  +  +       D  +P  V+ V+D+  GQ+A+ 
Sbjct: 176 NAQQANCDVLILDTAGRLHVDQVMMEELRAIK------DLTSPSEVILVVDSMIGQDAIN 229

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+   G TG+I+T++DG +RGG  + + ++   P+ F+  GE ++DL+ F  +  +
Sbjct: 230 VAKSFNDNIGITGIILTRIDGDSRGGAALSMKMSVGSPIKFIANGEKLSDLDDFYPERIA 289

Query: 308 AVITGCLD 315
             I    D
Sbjct: 290 KRILNMGD 297


>gi|315638652|ref|ZP_07893826.1| signal recognition particle protein [Campylobacter upsaliensis
           JV21]
 gi|315481276|gb|EFU71906.1| signal recognition particle protein [Campylobacter upsaliensis
           JV21]
          Length = 445

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 146/300 (48%), Gaps = 9/300 (3%)

Query: 21  FASTSLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           F   S   K  +  +  +   +      E L+  L+++D+   V ++++  +        
Sbjct: 2   FELVSESFKGAVNKLRFVDDEKALKNALETLKKSLLKADVHHKVTKELLSLIEDDVKKNG 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSD 137
           +  ++ L  + + + ++L    K   + FS +P  ++L+VG+ G GKTT   KL+  +  
Sbjct: 62  IGQKQFLEAIKKNLEEILSISGKNQGFIFSSKPPTIVLMVGLQGGGKTTSTIKLANYLKL 121

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++AA D  R AA++QL+   +    +    E  ++   +A EA ++A++   DVL
Sbjct: 122 RNKKVLVAACDLQRLAAVEQLRQLCEANEIELFYIENETNPIKVAGEALQKAKSGLFDVL 181

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  +  LM  + ++   L       P  +  V DA +GQ+ ++    F+   G
Sbjct: 182 LVDTAGRLAIDEALMGELKEVKASLN------PDEIFYVADAMSGQDGVKTASSFNEALG 235

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            +G+I++K D   +GG  + I     IP+ F+GVGE + DLE F+       I G  D  
Sbjct: 236 LSGVILSKFDADTKGGVALGIARQVNIPLRFIGVGEKVADLEIFIPDRIVGRIMGEGDLA 295


>gi|305663810|ref|YP_003860098.1| signal recognition particle-docking protein FtsY [Ignisphaera
           aggregans DSM 17230]
 gi|304378379|gb|ADM28218.1| signal recognition particle-docking protein FtsY [Ignisphaera
           aggregans DSM 17230]
          Length = 306

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 165/308 (53%), Gaps = 19/308 (6%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIV----E 68
           + +   +      + I+D I  + LD+       + L + LI SD+   VA+KIV     
Sbjct: 1   MFQKIRNAVQNFVKQISDAIRYKTLDEKDISRYCDNLLNELIESDVAYDVAEKIVTDIGN 60

Query: 69  ELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSK----PFNWDFSHRPHVILVVGVNGVG 123
            L   +  +  +V+  +   V +++ K+L   +      +    S +P  I+ +G+NGVG
Sbjct: 61  RLREIKIPRGTNVEEYINNIVIDVLRKLLDNATSYDFIEYIAKSSEKPVKIVFMGINGVG 120

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT I K++  +  AG+K ++ A DTFR+ A +QLK  ++R    F+  + G+D AA+A+
Sbjct: 121 KTTTIAKVAYMLKKAGVKPVIVAADTFRAGAQEQLKKHSERLGIPFIGGKYGADPAAVAF 180

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +    A   + DV++IDTAGR+H +  LM  + K+I+V+K      PH  + VLDA TG 
Sbjct: 181 DGIVFASKNRFDVVLIDTAGRMHIDVDLMNELKKVIKVVK------PHIKVLVLDALTGN 234

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           +A+ Q + F    G  G+I+TK+D  A GG  + +V      ++++GVG+G +DL  + +
Sbjct: 235 DAIEQAKKFDEAIGIDGVILTKLDADASGGAAVSVVAGLGKKIFYVGVGQGYDDLIRYSS 294

Query: 304 KDFSAVIT 311
                ++ 
Sbjct: 295 DIIIRLLF 302


>gi|284163555|ref|YP_003401834.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Haloterrigena turkmenica DSM 5511]
 gi|284013210|gb|ADB59161.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Haloterrigena turkmenica DSM 5511]
          Length = 463

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 80/307 (26%), Positives = 136/307 (44%), Gaps = 22/307 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L+  +  +    R+ +     + +E++  L+ +D+ V++  ++ + +  +   
Sbjct: 3   LDDLGSSLRGTLDKLRGKSRISEEDIEEIVKEIQRSLLSADVDVSLVMELSDNIKERALE 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++          VL  V E +  ++       + +       IL+ G+ G GKTT   K+
Sbjct: 63  EEPPAGTPARDFVLRIVYEELVDLIGD-----STELPLEEQTILLAGLQGSGKTTSAAKM 117

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +   S  GL+  +   DTFR  A +Q K    R   DF  +    D   +A +  ++   
Sbjct: 118 AWWFSTKGLRPAVIQTDTFRPGAYEQAKEMTQRAEVDFYGNPDNDDPVEIARKGLEKTSE 177

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV I+DTAGR      L+  I ++  V        P + L VLDA  GQ A  Q + 
Sbjct: 178 --ADVHIVDTAGRHALEDELIDEIEEIEDV------ADPDTSLLVLDAAIGQGAKDQAQQ 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G  G+++TK+DGTA+GGG +  V      + FLG GE + D+E F    F + + 
Sbjct: 230 FDESIGIDGVVITKIDGTAKGGGALTAVDQTDSSIAFLGTGEEVQDIERFEPDGFISRLL 289

Query: 312 GCLDYGE 318
           G  D G+
Sbjct: 290 GMGDLGQ 296


>gi|323359697|ref|YP_004226093.1| signal recognition particle GTPase [Microbacterium testaceum
           StLB037]
 gi|323276068|dbj|BAJ76213.1| signal recognition particle GTPase [Microbacterium testaceum
           StLB037]
          Length = 290

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 113/290 (38%), Positives = 166/290 (57%), Gaps = 8/290 (2%)

Query: 25  SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
           S  L   +  +     +D+   ++LE  L+ +D G  V +++V+EL  K      +  R 
Sbjct: 5   SWSLGRALRGLFVKPTIDETTWDDLETALLTADFGPDVTERLVDELREKVERFRTTDPR- 63

Query: 85  LYDVSELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
             D+  ++ + L      F      + RP V+LVVGVNGVGKTT IGK +K +   G  V
Sbjct: 64  --DLQRMLKETLEEHFAKFDTTLRLTERPAVVLVVGVNGVGKTTTIGKFAKFLQRYGRTV 121

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           ++ A DTFR+AA+DQL  WA+R  A  V     G D A++A++    A+    +++++DT
Sbjct: 122 VVGAADTFRAAAVDQLATWAERGGATIVRPQHEGQDPASVAFQTVAHAKETGTEIVLVDT 181

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH    LM  +GK+ RV+++  P A   VL VLDATTGQN L Q + F   AG TGL
Sbjct: 182 AGRLHTKGGLMDELGKIKRVIEKQAPIA--EVLLVLDATTGQNGLMQAQAFLDSAGVTGL 239

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           ++TK+DG+A+GG ++ +     IPV  LG GEGINDL  F    F++ + 
Sbjct: 240 VLTKLDGSAKGGFVLAVQERTGIPVKLLGQGEGINDLTGFTPHVFASSLV 289


>gi|134095939|ref|YP_001101014.1| GTP-binding signal recognition particle protein [Herminiimonas
           arsenicoxydans]
          Length = 396

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 118/231 (51%), Gaps = 8/231 (3%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM-L 144
            +++ ++   L P +   N+  +  P +IL+ G+ G GKTT +GKL+K + +   K +  
Sbjct: 21  RELAAIMGADLGPEASQLNF-ATQPPAIILMAGLQGAGKTTTVGKLAKYLREQKKKKVLT 79

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            + D +R AAI QLK   ++  ADF  SEI      +A  A   A+    DVLIIDTAGR
Sbjct: 80  VSADVYRPAAIGQLKTVTEQVGADFFPSEITDKPVDIALAALDYAKRHYHDVLIIDTAGR 139

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           L  +  +M  I  +   +K      P   L V+DA  GQ+A+   + F      TG+++T
Sbjct: 140 LGIDEAMMQEISAIHAAVK------PIETLFVVDAMLGQDAINTAKAFSDALPLTGIVLT 193

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           K+DG +RGG  + +      P+ F GV E ++ LE F     +  I G  D
Sbjct: 194 KLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPVRMADRILGMGD 244


>gi|307108511|gb|EFN56751.1| hypothetical protein CHLNCDRAFT_48710 [Chlorella variabilis]
          Length = 415

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 90/338 (26%), Positives = 148/338 (43%), Gaps = 50/338 (14%)

Query: 21  FASTSLKLKEGITDIISSRRLD-DGVREELED----------------LLIRSDIGVAVA 63
           F   S  L++    +    +L  D ++E + +                 L+ +D+ + V 
Sbjct: 2   FDGLSRSLEKAWDTVRKDGKLSADNIKEPMREIRRVVHPAVAPCGALRALLEADVSLPVV 61

Query: 64  QKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           ++ V+++      + V       Q++   V E +  ++            + P VIL+ G
Sbjct: 62  RRFVKKVEDAALGERVVKGLSPDQKLTKVVYEELKSLMGGEQAEL-VQPKYGPSVILMAG 120

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + G GKTT  GKL+  +   GLKV+L A D +R AAIDQL     +              
Sbjct: 121 LQGTGKTTAAGKLALYLKKKGLKVLLVATDVYRPAAIDQLVTLGGKIEVPVFELGTQVAP 180

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +A +  ++A+A++ D +I+DTAGRL  +  LMA + +   V++  D       L V+D
Sbjct: 181 PEIARQGLEKAKAEEYDAVIVDTAGRLQIDDRLMAELRETKEVVQPTD------TLLVVD 234

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV------------------- 279
           A TGQ A   V+ F+     TG ++TKMDG +RGG  + I                    
Sbjct: 235 AMTGQEAAGLVKAFNEAVDITGAVLTKMDGDSRGGAALSIKEAILCFNVFGDDCSSPPWR 294

Query: 280 --VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                  P+ F+G GE +  LEPF  +  ++ I G  D
Sbjct: 295 CLQVSGRPIKFVGTGEKMEALEPFFPERMASRILGMGD 332


>gi|44887895|sp|P83749|FTSY_THEAQ RecName: Full=Cell division protein ftsY
 gi|151567970|pdb|2Q9A|A Chain A, Structure Of Apo Ftsy
 gi|151567971|pdb|2Q9A|B Chain B, Structure Of Apo Ftsy
 gi|151567972|pdb|2Q9B|A Chain A, Structure Of Ftsy:gmppnp Complex
 gi|151567973|pdb|2Q9B|B Chain B, Structure Of Ftsy:gmppnp Complex
 gi|151567974|pdb|2Q9C|A Chain A, Structure Of Ftsy:gmppnp With Mgcl Complex
 gi|151567975|pdb|2Q9C|B Chain B, Structure Of Ftsy:gmppnp With Mgcl Complex
 gi|38699377|gb|AAR27056.1| signal recognition receptor [Thermus aquaticus]
 gi|39598846|gb|AAR28967.1| FtsY [Thermus aquaticus]
          Length = 304

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 169/316 (53%), Gaps = 29/316 (9%)

Query: 11  LSWIRKLTKGFASTSLKLKEGI---TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           + +  +L  G A T  +L + I    ++       +            +D+G++  ++I+
Sbjct: 1   MGFFDRLKAGLAKTRERLLKAIPWGGNLEEVLEELEMALL-------AADVGLSATEEIL 53

Query: 68  EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF----SHRPHVI-------L 115
           +E+         S ++ L + V E +  ML P  +            +P  +       L
Sbjct: 54  QEVRA-------SGRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVL 106

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT I KL +   + G KVM  AGDTFR+A   QL  W  R S   +    G
Sbjct: 107 VVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG 166

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D AALAY+A +  +A+  D+L +DTAGRLH    LM  + K+ R + + DP  P  V  
Sbjct: 167 TDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL 226

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDA TGQN L Q + FH   G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG 
Sbjct: 227 VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGP 286

Query: 296 NDLEPFVAKDFSAVIT 311
           +DL+PF  + F   + 
Sbjct: 287 DDLQPFDPEAFVEALL 302


>gi|57242693|ref|ZP_00370630.1| signal recognition particle protein [Campylobacter upsaliensis
           RM3195]
 gi|57016622|gb|EAL53406.1| signal recognition particle protein [Campylobacter upsaliensis
           RM3195]
          Length = 445

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 147/300 (49%), Gaps = 9/300 (3%)

Query: 21  FASTSLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           F   S   K  +  +  +   +      E L+  L+++D+   V ++++  +        
Sbjct: 2   FELVSESFKGAVNKLRFVDDEKALKNALESLKKSLLKADVHHKVTKELLSLIEDDVKKNG 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSD 137
           +  ++ L  + + + ++L    K   + FS +P  ++L+VG+ G GKTT   KL+  +  
Sbjct: 62  IGQKQFLEAIKKNLEEILSISGKNQGFIFSSKPPTIVLMVGLQGGGKTTSTIKLANYLKL 121

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++AA D  R AA++QL+   +    +    E  ++   +A EA ++A++   DVL
Sbjct: 122 RNKKVLVAACDLQRLAAVEQLRQLCEANEIELFYIENETNPIKVAREALQKAKSGLFDVL 181

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  +  LM+ + ++   L       P  +  V DA +GQ+ ++    F+   G
Sbjct: 182 LVDTAGRLAIDEALMSELKEVKTSLN------PDEIFYVADAMSGQDGVKTASSFNEALG 235

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            +G+I++K D   +GG  + I     IP+ F+GVGE + DLE F+       I G  D  
Sbjct: 236 LSGVILSKFDADTKGGVALGIARQVNIPLRFIGVGEKVADLEIFIPDRIVGRIMGEGDLA 295


>gi|303244020|ref|ZP_07330359.1| signal recognition particle-docking protein FtsY
           [Methanothermococcus okinawensis IH1]
 gi|302485672|gb|EFL48597.1| signal recognition particle-docking protein FtsY
           [Methanothermococcus okinawensis IH1]
          Length = 271

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 94/265 (35%), Positives = 140/265 (52%), Gaps = 16/265 (6%)

Query: 58  IGVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-----NWDF 107
           +   V +++VE L      TK  AKD   +  +  +   I ++L   +            
Sbjct: 1   MAYDVVERLVESLKNQLVGTKITAKDNPEEITINALKNAIKEILSQKNMDIYELIEEKKK 60

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P VI+ VG+NG GKTT I KL+ K+ + G  V+LAAGDTFR+ AI+QL+  A     
Sbjct: 61  SKEPVVIVFVGINGTGKTTSIAKLAHKLKNKGYSVVLAAGDTFRAGAIEQLEEHAKNIGV 120

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +  + G+D+AA+ Y+A + A+A+ +DV++ DTAGR   N  LM  I K++RV K    
Sbjct: 121 RVIKHQKGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNINLMDEIKKVVRVTK---- 176

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  V+ V D+  G +A+ Q E F+      G+I+TK+D  A+GG  + I      P+ 
Sbjct: 177 --PDLVVFVGDSLAGNDAINQAEEFNNAVNIDGVILTKVDADAKGGAALSIAYAIGKPIL 234

Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312
           FLGVG+   DLE F        + G
Sbjct: 235 FLGVGQRYEDLEEFNVDWMVNKLFG 259


>gi|58696771|ref|ZP_00372307.1| signal recognition particle protein [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58537035|gb|EAL60173.1| signal recognition particle protein [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 417

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 83/273 (30%), Positives = 136/273 (49%), Gaps = 12/273 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102
           E+   LI +D+ + VA+K + ++  K   + V       Q ++  V + +  +L      
Sbjct: 3   EIRIALIEADVSLEVAKKFINDIKDKVIGEKVIKSVSPAQMIIKIVQDNLVAVLGSEKSD 62

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            N      P VI++VG+ G GKTT  GKL+ K+     KVMLA+ D +R AA  QL++  
Sbjct: 63  LNLAV-KPPAVIMMVGLQGAGKTTTSGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLG 121

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +     +   I      +   A   A+    DVLI+DTAGRLH ++ +M  +  +  + 
Sbjct: 122 KQIDVQTLPVVIDEKPITITKRALAAAKNDNYDVLILDTAGRLHIDNNMMNELKAVKEI- 180

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                 +P  V+ V DA  GQ+A+   + F+ V G TG+I+T++DG ARGG  + + +  
Sbjct: 181 -----ASPAEVILVADAMIGQDAVNIAKSFNEVIGVTGIILTRVDGDARGGAALSMKMIA 235

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             P+ F+  GE ++DL+ F     +  I    D
Sbjct: 236 DCPIKFIACGEKLSDLDDFYPDRIAKRILSMGD 268


>gi|57167721|ref|ZP_00366861.1| signal recognition particle protein [Campylobacter coli RM2228]
 gi|305433226|ref|ZP_07402382.1| signal recognition particle protein [Campylobacter coli JV20]
 gi|57020843|gb|EAL57507.1| signal recognition particle protein [Campylobacter coli RM2228]
 gi|304443927|gb|EFM36584.1| signal recognition particle protein [Campylobacter coli JV20]
          Length = 445

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 142/300 (47%), Gaps = 9/300 (3%)

Query: 21  FASTSLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           F   S   K  I  +  +   +      + L+  L+++D+   V + ++  +        
Sbjct: 2   FELVSESFKSAINKLRFVDDEKALKNALDTLKKALLKADVHHKVVKDLLLLIEEDVKKNG 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +  ++ L  +   +  +L    K   + F+   P V+L+VG+ G GKTT   KL+  +  
Sbjct: 62  IGQKQFLEAIKTNLENILNADGKNQGFVFATKPPTVVLMVGLQGGGKTTSTVKLANYLKL 121

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++AA D  R AA++QLK   +    D    E   D   +A +A ++A+    DVL
Sbjct: 122 RNKKVLIAACDLQRLAAVEQLKQLCEANELDLFYIENEKDPIKVAQQALEKAKNSMADVL 181

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  +  LM  +  +  VL       P  +  V DA +GQ+ ++    F+ + G
Sbjct: 182 LVDTAGRLAIDEALMNELKAVKNVLN------PDEIFYVADAMSGQDGVKTASSFNELLG 235

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            TG+I++K D   +GG  + I     IP+ F+GVGE I DLE F+ +     I G  D  
Sbjct: 236 ITGVILSKFDADTKGGIALGITKQIGIPLRFVGVGEKIADLEIFIPERIVNRIIGEGDLA 295


>gi|257387282|ref|YP_003177055.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halomicrobium mukohataei DSM 12286]
 gi|257169589|gb|ACV47348.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halomicrobium mukohataei DSM 12286]
          Length = 468

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 137/301 (45%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L+  + D+    R+ +     + +E++  L+++D+ V + Q + + + ++   
Sbjct: 3   LDDLGSSLRGTLDDLRGKSRISEEDIEDIVKEIQRSLLQADVDVGLVQDLSDGIKSRALD 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++        D V  ++++ L+ L      +       I++ G+ G GKTT   K++   
Sbjct: 63  EEPPAGTTPRDWVLRIVYEELVDLVGEST-EIPLENQTIMLAGLYGSGKTTTAAKMAWWF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  GL+  +   DT R  A DQ K  AD    +F   E  +D   +A E    A  +  D
Sbjct: 122 SKKGLRPAVIQTDTDRPGAYDQSKQMADNAEVEFYGDEDSNDPVEIAREGL--AATEDAD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I+DTAGR   N  L+  I ++           P   L V+DA  GQ+A  Q + F   
Sbjct: 180 VRIVDTAGRDGLNEELIDQIERI------GAEVQPDRNLLVIDAAMGQSAKDQAQEFEDA 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+ +TK+DGTA+GGG +  V      + FLG GE + D+E F    F + + G  D
Sbjct: 234 IGIDGVAITKLDGTAKGGGALAAVDQTDSTIAFLGTGETVKDIERFEPSGFISRLLGMGD 293

Query: 316 Y 316
            
Sbjct: 294 L 294


>gi|297619646|ref|YP_003707751.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Methanococcus voltae A3]
 gi|297378623|gb|ADI36778.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanococcus voltae A3]
          Length = 450

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 149/308 (48%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITDIISS----RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  +   +  I S+    ++L   V ++++  LI+SD+ V +  K+ +++  K   
Sbjct: 2   LDKLGQNISTALNKIKSATLVDKKLIKEVIKDIQKALIQSDVNVKLVLKMSKDIEKKAIE 61

Query: 77  KD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++        + ++  V   + +++    +  + D S +  +IL+VG+ G GKTT   KL
Sbjct: 62  ENPPKGLTKKEHIIQIVYNELVQLIGNEPQKLDLDPSKK-SIILLVGIQGSGKTTSSAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQAQ 190
           ++ +   GLK  L A D +R AA  QL+  A++ +      E  +     +A +   + +
Sbjct: 121 ARLIQKRGLKPALIAADVYRPAAYKQLQQLAEKINVPLYGDETRTKTPIEIAKDGLNKLK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             K DV IIDTAGR    S L+  + ++       D   P  ++ V+D T GQ A  Q +
Sbjct: 181 --KADVFIIDTAGRHKEESGLLTEMKELK------DELNPKEIVLVIDGTLGQQAKNQAK 232

Query: 251 MFHAVAGTTGLIM-TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            F       G I+ TK+DG+A+GGG +  V     P+ F+G GEG++DLE F  K F + 
Sbjct: 233 AFKDAVEDIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDDLETFEPKKFISR 292

Query: 310 ITGCLDYG 317
           + G  D  
Sbjct: 293 LLGMGDLD 300


>gi|159471143|ref|XP_001693716.1| subunit of the signal recognition particle [Chlamydomonas
           reinhardtii]
 gi|158283219|gb|EDP08970.1| subunit of the signal recognition particle [Chlamydomonas
           reinhardtii]
          Length = 503

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 78/307 (25%), Positives = 137/307 (44%), Gaps = 18/307 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 ++ + +  + +S  +D    D + +E+   L++SD+ V     +   +  +   
Sbjct: 3   LQELGSRISKAVATLAASSVIDEKVLDALLKEICTALLQSDVNVKQVANLRNGVKKRVNI 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVI 128
           ++++       V E      +  ML   + P   +         V++ VG+ G GKTT  
Sbjct: 63  QELAAGLNKQRVIEKAVFDELCDMLDSGADPKKLELKKEKGKQQVVMFVGLQGSGKTTTC 122

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            K +      G K  L   DT+R+ A DQLK  A +    F  S   +D AA+A +   +
Sbjct: 123 TKYAYYYKKKGWKPALVCADTYRAGAFDQLKQNATKAQIPFYGSYKETDPAAIAQQGVLR 182

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +  D++I+DT+GR    + L   + ++   +       P  ++ V+D + GQ A  Q
Sbjct: 183 FREEGRDLIIVDTSGRHKQEAALFEEMKQVAAAVS------PDVIIFVMDGSIGQAAFDQ 236

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F        +I+TK+DG A+GGG +  V   K P+ FLG GE ++  E F  K F  
Sbjct: 237 AKAFKEAVEVGAVIITKLDGHAKGGGALSAVSATKSPIIFLGTGEHMDQFESFETKRFVQ 296

Query: 309 VITGCLD 315
            + G  D
Sbjct: 297 RLLGKGD 303


>gi|197294839|ref|YP_001799380.1| Signal recognition particle GTPase [Candidatus Phytoplasma
           australiense]
 gi|171854166|emb|CAM12160.1| Signal recognition particle GTPase [Candidatus Phytoplasma
           australiense]
          Length = 453

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 144/305 (47%), Gaps = 16/305 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L  GF     K++     II SR + + + E++   LI +D+ + V     E +  K   
Sbjct: 4   LGDGFQKIINKIRG--KKIIESRDI-ENIMEDIRLSLIEADVNIKVIDTFHELISKKSLK 60

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V       + ++  ++E + ++L               + ++++G+ G GKTT  GKL
Sbjct: 61  QEVLKGLKPKEHIIKIINETLTQILGSTRSDLVVQPKPHLNAMMLIGLQGSGKTTTAGKL 120

Query: 132 SKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +  +      KV+L A D +R  A++QLK+   +   D   S+  +    +     + AQ
Sbjct: 121 ALWLRKKNHQKVLLIACDIYRPGAVEQLKVIGRQIKIDVF-SQGNTPVIEIVELGLQYAQ 179

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D ++IDTAGRL  +  +M  + ++              VL V+DA TGQ + +  +
Sbjct: 180 KNGYDAIVIDTAGRLTIDEKMMQELKEIKSKCD------FSEVLLVIDALTGQQSAKNTQ 233

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FH   G TG+I+TKMD   +GG  + + V  ++P+ F+   E I+ LEPF     ++ +
Sbjct: 234 TFHQQVGATGVILTKMDADTKGGASLSVRVMTELPLKFISSSESIDLLEPFNPDRMASRL 293

Query: 311 TGCLD 315
            G  D
Sbjct: 294 LGMGD 298


>gi|116514964|ref|YP_802593.1| hypothetical protein BCc_015 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256818|gb|ABJ90500.1| signal recognition particle receptor [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 346

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 169/302 (55%), Gaps = 1/302 (0%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
              +     L   + ST     + + +I  ++ LD    ++LED+L+ SD GV   +KI+
Sbjct: 39  KSKIGIFSFLKNYWNSTKDIFTKKLKNIFLNKNLDKKFFKKLEDILLSSDFGVQSTKKIL 98

Query: 68  EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
                K    +++  ++      E++ K+L   SK  + +      +ILVVG+NGVGKTT
Sbjct: 99  NLFKEKIKKNNITDTKIAKVYFKEILLKILKKSSKFSDKNNYSNLLIILVVGINGVGKTT 158

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            + KL+    + G  V+L+A DTFRSAAIDQL    +  + +     IGSD +++A+++ 
Sbjct: 159 AVVKLANYYKNLGKSVILSACDTFRSAAIDQLIDLGNLYNIEIFYKSIGSDPSSVAFDSI 218

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+ KK+D++IIDTAGR+HN   L+  + KM RV+K+    A +    V+DA  GQN++
Sbjct: 219 IYAKKKKIDIVIIDTAGRMHNKMHLIQELKKMNRVIKKCCSTAFYKTYLVIDAGIGQNSI 278

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           +Q ++F +    +G I+TK+D TA+GG +  I+   KIP+ ++  GE I D   F  K F
Sbjct: 279 QQAKIFSSEINISGSIITKLDSTAKGGIIFSIINDLKIPICYISAGEKITDFNIFDYKYF 338

Query: 307 SA 308
             
Sbjct: 339 IE 340


>gi|257052337|ref|YP_003130170.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halorhabdus utahensis DSM 12940]
 gi|256691100|gb|ACV11437.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halorhabdus utahensis DSM 12940]
          Length = 469

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 134/301 (44%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L+  +  +    R+ +     V +E++  L+++D+ V +   + + + T+   
Sbjct: 3   LDDLGSSLRGALDGLRGKSRISEEDVQAVVKEIQRSLLQADVDVDLVMDLSDSIETRALE 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++        D V  ++++ L+ L      +    P  I++ G+ G GKTT   K++   
Sbjct: 63  EEPPAGTSARDWVLRIVYEELVDLVGEST-ELPLEPQTIVLAGLQGSGKTTSAAKIAWWF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  GL+  +   DT+R  A +Q +  A+R   DF       DA  +A +  +       D
Sbjct: 122 SKKGLRPAVIQTDTWRPGAYEQAEEMAERAEVDFYGDPDEDDAVKIARDGLEATDD--AD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I+DTAGR      L+  +  +  V        P   L VLDA  GQ A  Q   F   
Sbjct: 180 VQIVDTAGRHALEDGLIDELEDIESV------ADPDHNLLVLDAAIGQEAKEQASRFEDA 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+++TK+DGTA+GGG +  V      + FLG GE + D+E F    F + + G  D
Sbjct: 234 VGIDGVVITKLDGTAKGGGALVAVNETDSTIAFLGTGETVKDVERFEPSGFISRLLGMGD 293

Query: 316 Y 316
            
Sbjct: 294 L 294


>gi|167043460|gb|ABZ08157.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine microorganism HF4000_APKG2H5]
          Length = 504

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 134/302 (44%), Gaps = 15/302 (4%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRY 75
                  ++   +  +   R++D+   +EL       L+ +D  V  ++++ E +  +  
Sbjct: 54  ALDGLKHRIMGSVGALRGKRKIDEESVKELGRSLRKALLEADFNVRHSKELTERIERRML 113

Query: 76  AKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-K 133
            ++      L      LI+  L+ L  P   +       IL+VG+ G GKTT   KL+  
Sbjct: 114 EEEPRPGIKLDTHAMNLIYAELVRLLGPAR-EIMPHNQTILMVGLYGQGKTTTTAKLADW 172

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                GLKV +   D  R  A +QL+   + T+ D       SDA  +     +      
Sbjct: 173 WRRRHGLKVAVIEADAHRPGAYEQLQQLLEGTNVDVYGEPGESDATKIVRNGIRNVGT-- 230

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DVLIIDTAGR   +  L   + ++  V              V+DA  GQ A    + FH
Sbjct: 231 ADVLIIDTAGRDGLDDELRDELVRIAEVANAT------ECFLVIDAQVGQAAGPVAQSFH 284

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            + G TG I+TK+DGTARGGG +  V T   P+ F+G GE I DLE F +  F + + G 
Sbjct: 285 ELVGVTGTIVTKLDGTARGGGALSAVATTGAPIVFVGEGERIQDLELFESDRFISRLLGL 344

Query: 314 LD 315
            D
Sbjct: 345 GD 346


>gi|315230267|ref|YP_004070703.1| FtsY-like signal recognition particle receptor protein subunit
           alpha [Thermococcus barophilus MP]
 gi|315183295|gb|ADT83480.1| FtsY-like signal recognition particle receptor protein, alpha
           subunit [Thermococcus barophilus MP]
          Length = 300

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 87/264 (32%), Positives = 137/264 (51%), Gaps = 15/264 (5%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMPLSK----PFNWDFS 108
           + + V +++ E++  +   + V +      + E      + ++L P  K           
Sbjct: 42  VALEVVEELKEKIKQQLVGQKVKIGTDKKKIVEDAVRKAVLEVLTPERKINLLEMIKAKK 101

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +P VI+ VG NG GKTT I KL+  +   GL  ++AA DTFR+ AI+Q++  A R    
Sbjct: 102 EKPFVIVFVGFNGSGKTTTIAKLAHWLKKHGLSSVIAASDTFRAGAIEQVEEHARRVGVK 161

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +    G+D AA+AY+A + A+A+ VDV+++DTAGR   N  LM  + K++RV K     
Sbjct: 162 VIKHRYGADPAAVAYDAIQHAKARGVDVVLVDTAGRNELNRNLMDEMKKIVRVTK----- 216

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  V+ V DA  G   + Q   F+      G+I+TK+D  ARGG  + I      P+ F
Sbjct: 217 -PDLVIFVGDALAGNAIIEQARQFNEAVKIDGVILTKLDADARGGAALSISHAIGAPILF 275

Query: 289 LGVGEGINDLEPFVAKDFSAVITG 312
           +G+G+G +DL+ F  K     I G
Sbjct: 276 VGIGQGYDDLKEFDEKWMIEKIFG 299


>gi|156937965|ref|YP_001435761.1| signal recognition particle-docking protein FtsY [Ignicoccus
           hospitalis KIN4/I]
 gi|156566949|gb|ABU82354.1| signal recognition particle-docking protein FtsY [Ignicoccus
           hospitalis KIN4/I]
          Length = 340

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 159/302 (52%), Gaps = 26/302 (8%)

Query: 28  LKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           L   + D I  + +D    + + EE    L   D+   VA++++E    K+    + ++R
Sbjct: 45  LLTKLKDTIVYKEIDVKKLEPLLEEYVLTLSELDVAYEVAEELIENF--KKNLAGLKIKR 102

Query: 84  VLYDVSELIHKMLMP-------------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            + D  E+I K L               + +        R   I+ +GVNGVGKTT I K
Sbjct: 103 GV-DEREVIEKALKDAILGLISVPAFDLIEEAKRAQREGRILKIMFMGVNGVGKTTTIAK 161

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++  M  AG+  +LAA DTFR+ A++QLK+ A+R     +    GSD A++AY+A + A+
Sbjct: 162 VAYAMKRAGVTPVLAAADTFRAGAVEQLKVHAERMGVPIITKPYGSDPASVAYDAIEYAK 221

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           A+  +V++IDTAGR+H +  LM  + K+ RV +      P   + VLDA TG +A+ Q +
Sbjct: 222 ARGFNVVLIDTAGRMHVDVDLMNELRKVARVAE------PDYKVLVLDALTGNDAVEQAK 275

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G   +I+TK+D  A+GG ++ +  T K PV +LGVG+   DL  F  K F   +
Sbjct: 276 FFDEAVGVDAVILTKVDADAKGGAVLSVAATIKKPVLYLGVGQNYEDLIKFDPKWFVERL 335

Query: 311 TG 312
            G
Sbjct: 336 LG 337


>gi|118575528|ref|YP_875271.1| signal recognition particle GTPase [Cenarchaeum symbiosum A]
 gi|118194049|gb|ABK76967.1| signal recognition particle GTPase [Cenarchaeum symbiosum A]
          Length = 422

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 92/276 (33%), Positives = 140/276 (50%), Gaps = 14/276 (5%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           + +ELE  L+ SD+   VA  I E+L  +     V    +   V E +  ++  L     
Sbjct: 1   MLDELEISLLESDVAAEVADSIKEDLKGRLVGTSVDKHVIGEHVRESLIGIISDLFDGAG 60

Query: 105 W--------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
                         P++I+ VG+NG GKTT + K++  + D+ L V+LAA DTFR+ AI+
Sbjct: 61  AVDLLERIRAKKDDPYIIVFVGINGTGKTTSVAKIAHMLRDSKLSVVLAAADTFRAGAIE 120

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL+  A R +   V    GSD AA+A +A   A++  VD +++DTAGR+  +  LM  I 
Sbjct: 121 QLREHAKRLNLKIVAQNYGSDPAAVARDAVLYARSHGVDCVLVDTAGRMQTSKNLMEQIE 180

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+IRV++      P   + V D+  G + + Q   FH        I+TK D  ARGG  +
Sbjct: 181 KIIRVVQ------PDLKIFVGDSLAGNDTVNQAGEFHEHIKFDCSILTKNDADARGGAAL 234

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            IV T   PV ++G G+   D+ PF  + F   + G
Sbjct: 235 SIVKTTSTPVIYVGTGQEYGDIRPFSKETFIETVFG 270


>gi|289581485|ref|YP_003479951.1| signal recognition particle-docking protein FtsY [Natrialba magadii
           ATCC 43099]
 gi|289531038|gb|ADD05389.1| signal recognition particle-docking protein FtsY [Natrialba magadii
           ATCC 43099]
          Length = 470

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/299 (31%), Positives = 151/299 (50%), Gaps = 15/299 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           GF   +    +G   +I    L +G   ELE  L+ SD+ + VA++I++ +  +   +  
Sbjct: 177 GFGRKAKSFVKG-KFVIEEEDL-EGPLHELEMALLSSDVEMGVAEEILDNIRDELIGETR 234

Query: 80  SVQRVLYDVSEL-IHKMLMPLSKPFNWDFS------HRPHVILVVGVNGVGKTTVIGKLS 132
           +      +V E  +   +  +     +DF        +P  I+  GVNGVGKTT I KLS
Sbjct: 235 TFTTSTGEVVEEALRDAIYDVISVGQFDFDERIAIEDKPVTIIFTGVNGVGKTTSIAKLS 294

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +   + G   ++A GDT+R+ A +Q++  A+      +  E G D AA+ Y+A + A+A 
Sbjct: 295 RYFEERGYSTVMANGDTYRAGANEQIQEHANALDTKLITHEQGGDPAAVLYDAVEYAEAN 354

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            VDV++ DTAGRLH +  LM  + K+ RV+       P   L V +A  GQ+A+ +   F
Sbjct: 355 DVDVVLGDTAGRLHTDEGLMDQLEKIDRVVD------PDMTLFVDEAVAGQDAVNRAREF 408

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +  A   G I+TK D  + GG  I +      P+ FLGVG+G + +E F  ++    + 
Sbjct: 409 NNAAEIDGAILTKADADSNGGAAISVAHVTGRPILFLGVGQGYDHIERFDPEEMVDRLL 467


>gi|284925965|gb|ADC28317.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 445

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 86/300 (28%), Positives = 143/300 (47%), Gaps = 9/300 (3%)

Query: 21  FASTSLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           F   S   K  I  +  +   +      E L+  L+++D+   V ++++  +        
Sbjct: 2   FELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHKVTKELLTLIEEDAKQNG 61

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +  ++ L  +   +  +L    K   + F S  P V+L+ G+ G GKTT   KL+  +  
Sbjct: 62  IGQKQFLNAIKINLENILSVNGKNQGFVFASKPPTVVLMAGLQGGGKTTSTIKLANYLKL 121

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++AA D  R AA++QL    +    +    E   D   +A EA K+A++  VDVL
Sbjct: 122 RNKKVLVAACDLQRLAAVEQLIQLCEANEIELFFIENEKDPIRVAKEALKKAESSMVDVL 181

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  +  LM  +  +  VL       P  +  V DA +GQ+ ++    F+ V G
Sbjct: 182 LVDTAGRLAIDEALMDELRAVKDVLN------PDEIFYVADAMSGQDGVKTAASFNEVLG 235

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            +G+I++K D   +GG  + I     IP+ F+GVGE + DLE F+     + I G  D  
Sbjct: 236 ISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADLEVFIPDRIVSRIMGEGDLA 295


>gi|33242339|ref|NP_877280.1| ftsY cell division protein [Chlamydophila pneumoniae TW-183]
 gi|33236850|gb|AAP98937.1| ftsY cell division protein [Chlamydophila pneumoniae TW-183]
          Length = 310

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 98/284 (34%), Positives = 149/284 (52%), Gaps = 4/284 (1%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
            +  +  +   + +   + E+ E L   +D G  + +++   L   + A D S  + L  
Sbjct: 25  FRNKLQSLF-KKNISLDLIEDAESLFYEADFGTELTEELCARLRWTKKA-DASTIKDLIT 82

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           V  L+ + L  L    +     RP V L++G NG GKTT   KL+    +    VML A 
Sbjct: 83  V--LLRESLEGLPSQASQSSQTRPIVSLLLGTNGSGKTTTAAKLAHYYKERSESVMLVAT 140

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+A +DQ ++WA+     FV  + G DAAA+A++  + A A+    +IIDT+GRLH 
Sbjct: 141 DTFRAAGMDQARLWANELGCGFVSGQPGGDAAAIAFDGIQSAIARGYSRVIIDTSGRLHV 200

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  LM  + K++ V  +    APH +   +D+T G NA+ QV +FH V   +GLI TK+D
Sbjct: 201 HGNLMKELSKIVSVCGKALEGAPHEIFMTVDSTLGNNAIEQVRVFHDVVPLSGLIFTKVD 260

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G+A+GG L  I    KIP  F+G GE + DL  F    F   + 
Sbjct: 261 GSAKGGTLFQIAKRLKIPTKFIGYGESLKDLNEFDLDLFLNKLF 304


>gi|308234554|ref|ZP_07665291.1| signal recognition particle-docking protein FtsY [Atopobium vaginae
           DSM 15829]
 gi|328944152|ref|ZP_08241617.1| cell division protein FtsY [Atopobium vaginae DSM 15829]
 gi|327492121|gb|EGF23895.1| cell division protein FtsY [Atopobium vaginae DSM 15829]
          Length = 303

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 104/303 (34%), Positives = 165/303 (54%), Gaps = 10/303 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           ++  +L  G A +     E +++I      +DD   ++LED L+ +D+G  +  +I ++L
Sbjct: 3   NFTERLKAGLARSR----EALSEIFYMGACVDDDFWDDLEDRLVMADVGAELTARICDDL 58

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIG 129
                 K  +    +    + +   L       ++D FS  P  I+ VG+NG GKTT +G
Sbjct: 59  RDLAAQKGYTQAAQI---QQALIDRLAQEFYTIDYDMFSTYPGCIVFVGINGAGKTTTVG 115

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL+    ++G   ++   DTFR+AAI+QL +W  R     V  E GSD A++ Y+  ++A
Sbjct: 116 KLAFVCKESGHSCLIGGADTFRAAAIEQLDVWGKRAGVRVVTRERGSDPASICYDVLEEA 175

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A+  D+++IDTAGRLH +  LM  + K++  + R     P  ++ VLDAT GQN L Q 
Sbjct: 176 AAQSTDLVLIDTAGRLHTSIDLMKELQKVV-AISRKRASMPVKIVLVLDATCGQNGLVQA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + FH      G+I+TK+DGTA+GG  + I    K+P+   GVGE I DL+ F   +F A 
Sbjct: 235 QQFHESLSLDGIIVTKLDGTAKGGIALRISHDLKLPIVRCGVGEQIEDLQRFDPYEFCAA 294

Query: 310 ITG 312
           + G
Sbjct: 295 LVG 297


>gi|26553705|ref|NP_757639.1| signal recognition particle GTPase [Mycoplasma penetrans HF-2]
 gi|26453712|dbj|BAC44043.1| signal recognition particle GTPase [Mycoplasma penetrans HF-2]
          Length = 445

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 137/298 (45%), Gaps = 15/298 (5%)

Query: 25  SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
           S  +K+ + +          V +++   L+ +D+ ++V + +++ +        V   + 
Sbjct: 11  SKNMKKKLENSTIKEEDLVEVLKQIRISLLDADVNLSVTKNLIKNIREAAVGTMVDPGQK 70

Query: 85  -----LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA- 138
                L  + E + K+L   +K    DF  +   I++VG+ G GKTT   K++       
Sbjct: 71  PEDALLLIIKEELIKVLGSETK--TIDFEKKKLKIMMVGLQGSGKTTTAAKIASFAKGKF 128

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             K +L A D +R AAIDQL+  ++    DF   +   D    + EA   A   K D+++
Sbjct: 129 DKKPLLVACDIYRPAAIDQLRTLSEEIKVDFY-DKKQQDPVKTSKEALDIADKNKNDLVV 187

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDTAGRLH N  LM  + K+ +         P  +L V+DA  GQ+     + FH     
Sbjct: 188 IDTAGRLHTNKELMEELQKIKKATN------PDEILLVVDAMAGQDITNVAQEFHNNLNL 241

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           TG+++TK+D  AR G  + +     +P+   GVGE +  L+ F  +     I G  D 
Sbjct: 242 TGIVITKLDSDARAGAALSLRSILDVPIKLTGVGEKVGSLDVFHPERIVDKILGFGDM 299


>gi|15791234|ref|NP_281058.1| signal recognition particle receptor [Halobacterium sp. NRC-1]
 gi|169236990|ref|YP_001690190.1| signal recognition particle receptor SRalpha [Halobacterium
           salinarum R1]
 gi|10581862|gb|AAG20538.1| signal recognition particle receptor [Halobacterium sp. NRC-1]
 gi|167728056|emb|CAP14844.1| signal recognition particle receptor SRalpha [Halobacterium
           salinarum R1]
          Length = 373

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 85/286 (29%), Positives = 140/286 (48%), Gaps = 17/286 (5%)

Query: 41  LDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKM 95
           +D+   E    ELE  L+ SD+ ++V ++I++++      ++         + E  + + 
Sbjct: 93  IDEADLEAPLRELEFALLESDVEMSVVEEILDQIRGDLVGEERKFTESTDTLIEDALREA 152

Query: 96  LMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           L+ +     +D         +P  I+  GVNGVGKTT I KL++ +   G   +LA GDT
Sbjct: 153 LLSVIDVGQFDLVDEIESTSKPVTIVFTGVNGVGKTTTIAKLARYLESEGFSSVLANGDT 212

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R+ A  Q++  A+      +  E G D  A+ Y+A + A A  VDV++ DTAGRLH + 
Sbjct: 213 YRAGANQQIEEHAEALGVKCITHEQGGDPTAVVYDAVEYADANDVDVVLGDTAGRLHTSD 272

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM+ + K+ RV+       P   + V +A  GQ+A+ +   F   +   G I+T  D  
Sbjct: 273 DLMSQLEKLDRVVD------PDVTVFVDEAVAGQDAVNRAREFDEASAVDGTILTMADAD 326

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++GG  I +      P+ FLG G+   DLEPF        +    D
Sbjct: 327 SQGGAAISVSHVTGKPILFLGTGQAYEDLEPFDPDALVDDLLAASD 372


>gi|145591809|ref|YP_001153811.1| signal recognition particle-docking protein FtsY [Pyrobaculum
           arsenaticum DSM 13514]
 gi|145283577|gb|ABP51159.1| signal recognition particle-docking protein FtsY [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 305

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 90/311 (28%), Positives = 153/311 (49%), Gaps = 19/311 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
              +L K F+     +   +  D +S + +++ V   L   LI +D+ V VA  + EEL 
Sbjct: 1   MFNRLKKAFSKFVESVVSTVKEDTLSEKDVNE-VISNLYFDLIENDVAVEVADAVTEELK 59

Query: 72  TKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFNWDF---------SHRPHVILVVGVN 120
            +     V        V +  ++  ++  LS   + DF         + RP  ++ +G N
Sbjct: 60  KRLIGVKVPRFGDKEAVVKKAVLDALMGVLSDVPDVDFYQDSKNRLETSRPVTVMFLGPN 119

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT + KL+  + + G +V+ AA DTFR+ A +QL+    R     +    G+D A+
Sbjct: 120 GYGKTTTLAKLAYHLQERGFRVVAAAADTFRAGAREQLEEHGRRVGFRVIGGPYGADPAS 179

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AY+A + A++K    ++IDTAGR+H ++ LM  + K+ RV++          + V DA 
Sbjct: 180 VAYDAVQHARSKGFHYVLIDTAGRMHTDANLMEELRKIQRVVEPQYS------IFVFDAQ 233

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            G  AL     +       G+I  K+D   +GG ++  + T K PVYFLGVG+   DL  
Sbjct: 234 LGNEALEIARYYSKYVKIDGMIAAKVDAYPKGGSILTFLYTLKRPVYFLGVGQSYKDLVQ 293

Query: 301 FVAKDFSAVIT 311
           F  +++ + + 
Sbjct: 294 FTKQEYVSQLL 304


>gi|145628344|ref|ZP_01784145.1| cell division protein FtsY [Haemophilus influenzae 22.1-21]
 gi|144980119|gb|EDJ89778.1| cell division protein FtsY [Haemophilus influenzae 22.1-21]
          Length = 204

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 97/198 (48%), Positives = 138/198 (69%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL+VGVNGVGKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R     V   
Sbjct: 2   ILMVGVNGVGKTTTIGKLARKFQSEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVSQS 61

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            GSD+A++ ++A + A A+ +D+LI DTAGRL N + LM  + K++RV+K+ D  APH +
Sbjct: 62  TGSDSASVIFDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEI 121

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           +  LDA TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE
Sbjct: 122 MLTLDAGTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGE 181

Query: 294 GINDLEPFVAKDFSAVIT 311
            I DL  F AK+F   + 
Sbjct: 182 KIEDLREFNAKEFIEALF 199


>gi|55379689|ref|YP_137539.1| signal recognition 54 kDa protein [Haloarcula marismortui ATCC
           43049]
 gi|74552458|sp|Q5UY20|SRP54_HALMA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|55232414|gb|AAV47833.1| signal recognition 54 kDa protein [Haloarcula marismortui ATCC
           43049]
          Length = 469

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 139/301 (46%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L+  + D+    RL +     + +E++  L+++D+ V + Q +   + T+   
Sbjct: 3   LDDLGSSLRGTLDDLRGKSRLSEEDIEDIVKEIQRSLLQADVDVGLVQDLSNSIETRALD 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++        D V  ++++ L+ L      +       I++ G+ G GKTT   K++   
Sbjct: 63  EEPPAGTTPRDWVLRIVYEELVDLVGEST-ELPLEEQTIMLAGLYGSGKTTTAAKMAWWF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  GL+  +   DT R  A DQ K  A+R   DF       D   +A +  +  +    D
Sbjct: 122 STKGLRPAIIQTDTDRPGAYDQSKEMAERAEVDFYGDPDEDDPVKIARDGLEATE--NAD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I+DTAGR   N  L+  I ++ + ++      P   L VLDA  GQ+A  Q   F A 
Sbjct: 180 VRIVDTAGRDGLNEELIEQIERIEQEVQ------PDRDLLVLDAAMGQSAKSQAADFEAA 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+++TK+DGTA+GGG +  V      + FLG GE + D+E F    F + + G  D
Sbjct: 234 IGIDGVVITKLDGTAKGGGALAAVNETDSTIAFLGSGETVKDIERFEPSGFISRLLGMGD 293

Query: 316 Y 316
            
Sbjct: 294 L 294


>gi|283954764|ref|ZP_06372280.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283793604|gb|EFC32357.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 288

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 153/304 (50%), Gaps = 26/304 (8%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L KG A T   +     +   ++++   + EE+   L+ +D+              
Sbjct: 1   MFDFLKKGLAKTLENIAGVKGE---NKKITKDLLEEI---LLEADVS------------- 41

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSK-----PFNWDFSHRPHVILVVGVNGVGKTTV 127
             Y     +   L   +E+  + L  +               +P V L++GVNG GKTT 
Sbjct: 42  --YEIIEEIIYYLPPQNEIKKEDLKRVMGSYFLYEKKETIQEKPFVELILGVNGAGKTTS 99

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL+    +   KV+L A DTFR+ AI+QLK+WA +   D V +  G D +A+A++   
Sbjct: 100 IAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKIDVDIVLTAQGHDPSAVAFDTIS 159

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A+AK  D +IIDTAGRL N   L   + K++R+  +    APH  + VLD T G   + 
Sbjct: 160 KAKAKGFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGIL 219

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F+ +    G+I+TK+DGTA+GG L  I    ++P++++GVGE + DL+ F A  + 
Sbjct: 220 QAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYIGVGEQMTDLQEFDANAYL 279

Query: 308 AVIT 311
             + 
Sbjct: 280 DTLL 283


>gi|119717494|ref|YP_924459.1| signal recognition particle-docking protein FtsY [Nocardioides sp.
           JS614]
 gi|119538155|gb|ABL82772.1| signal recognition particle-docking protein FtsY [Nocardioides sp.
           JS614]
          Length = 376

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 117/317 (36%), Positives = 177/317 (55%), Gaps = 19/317 (5%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S + +L +  A +   L  G+  ++S  RLD+   E +ED L+ +D+GV   Q
Sbjct: 70  EKPEGTASRLVRLRQRLAGSQGGLGRGLLALLSRDRLDEDTWESIEDTLLTADVGVGPTQ 129

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV-------- 116
           ++VE L T+   +         D   ++ + L+ L  P   D   R HV  +        
Sbjct: 130 ELVERLRTRLRVEGAP-----EDARGVLREELLALVDP---DMDRRLHVSGLDGMPGVVL 181

Query: 117 -VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNG GKTT +GK+S+ +      V+L A DTFR+AA++QL  W +R   D V    G
Sbjct: 182 VVGVNGSGKTTTVGKISRILVAEDRSVVLGAADTFRAAAVEQLATWGERVGVDVVRGPEG 241

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++A+EA K+    K D +I+DTAGRL N + LM  +GK+ RV+++  P     VL 
Sbjct: 242 TDPASVAFEAVKEGVETKADTVIVDTAGRLQNKAGLMDELGKVKRVIEKQAPVT--EVLL 299

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQN L Q  +F  V   TG+++TK+DG+A+GG ++ +     +PV  +G+GEG 
Sbjct: 300 VLDATTGQNGLIQARVFSEVVNVTGIVLTKLDGSAKGGIVVQVQRELGVPVKLVGLGEGA 359

Query: 296 NDLEPFVAKDFSAVITG 312
           +DL PF A  F   + G
Sbjct: 360 DDLAPFDAGAFVDALLG 376


>gi|218296515|ref|ZP_03497243.1| signal recognition particle-docking protein FtsY [Thermus aquaticus
           Y51MC23]
 gi|218243057|gb|EED09589.1| signal recognition particle-docking protein FtsY [Thermus aquaticus
           Y51MC23]
          Length = 304

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 169/316 (53%), Gaps = 29/316 (9%)

Query: 11  LSWIRKLTKGFASTSLKLKEGI---TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           + +  +L  G A T  +L + I    ++       +            +D+G++  ++I+
Sbjct: 1   MGFFDRLKAGLAKTRERLLKAIPWGGNLEEVLEELEMALL-------AADVGLSATEEIL 53

Query: 68  EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF----SHRPHVI-------L 115
           +E+         S ++ L + V E +  ML P  +            +P  +       L
Sbjct: 54  QEVRA-------SGRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVL 106

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT I KL +   + G KVM  AGDTFR+A   QL  W  R S   +    G
Sbjct: 107 VVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG 166

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D AALAY+A +  +A+  D+L +DTAGRLH    LM  + K+ R + + DP  P  V  
Sbjct: 167 TDPAALAYDAVQAMKARDYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL 226

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDA TGQN L Q + FH   G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG 
Sbjct: 227 VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIRFIGVGEGP 286

Query: 296 NDLEPFVAKDFSAVIT 311
           +DL+PF  + F   + 
Sbjct: 287 DDLQPFDPEAFVEALL 302


>gi|260891156|ref|ZP_05902419.1| signal recognition particle-docking protein FtsY [Leptotrichia
           hofstadii F0254]
 gi|260859183|gb|EEX73683.1| signal recognition particle-docking protein FtsY [Leptotrichia
           hofstadii F0254]
          Length = 281

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 106/261 (40%), Positives = 159/261 (60%), Gaps = 3/261 (1%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HR 110
           I+SDIG+ +  ++VEEL      K +     +YD  + + K  +  +   +        +
Sbjct: 20  IQSDIGMNMTMQLVEELEKSVSRKKLKTSEQIYDELKELLKAKLIYNDESSTKLKLQDGK 79

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            +++LVVGVNGVGKTT IGK++KK+ D+G KV++ AGDTFR+AAI+Q++ W  RT  + +
Sbjct: 80  LNILLVVGVNGVGKTTSIGKIAKKLKDSGKKVIIGAGDTFRAAAIEQVEEWGKRTGVEVI 139

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               GSD AA+ ++  K A+ +  DV I+DTAGRLHN   LM  + K+ ++++       
Sbjct: 140 KQAHGSDPAAVIFDTVKTAKNRGFDVAILDTAGRLHNKRDLMKELEKINKIIREQSGETD 199

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L V+D+TTGQN L Q  +F+ +   TG+I+TK DGTA+GG + PI    K P+ F+G
Sbjct: 200 FETLLVIDSTTGQNGLEQARIFNEIVDLTGIILTKFDGTAKGGIIFPITEELKKPIKFIG 259

Query: 291 VGEGINDLEPFVAKDFSAVIT 311
           VGEGI DL  F  K+F   + 
Sbjct: 260 VGEGIEDLREFDTKEFVEAMF 280


>gi|15679603|ref|NP_276720.1| signal recognition particle protein (docking protein)
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622733|gb|AAB86081.1| signal recognition particle protein (docking protein)
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 358

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 92/293 (31%), Positives = 149/293 (50%), Gaps = 16/293 (5%)

Query: 29  KEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
             G       +R+     D V  +LE  L+ SD+ + VA+KI  EL  +   + V     
Sbjct: 71  GSGFLSFFREKRITEKDVDDVLWDLEMALLESDVALEVAEKITTELKEELVGRKVKRSTE 130

Query: 85  LYD-----VSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           + +     + + +  +L +            +P VI+ VG+NG GKTT I K+++     
Sbjct: 131 ISEYTMEALKKAVKDVLSVDGVDLPQLVEKKKPLVIMFVGINGTGKTTTIAKVARYFMKK 190

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           GL+ ++AA DTFR+ AI+Q+   AD+     +    G+D AA+A++A   A+A+  DV++
Sbjct: 191 GLEPVIAAADTFRAGAIEQIGQHADKLGVKLISHRKGADPAAVAFDAVSHAKAQGKDVVL 250

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDTAGR+  N  LM  + K+ RV+       P  ++ V DA TG +A+ Q   F    G 
Sbjct: 251 IDTAGRMQTNVNLMDEMAKIKRVV------RPDLIVFVGDALTGNDAIEQAARFDEAVGI 304

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             +I+TK D  ARGG  + I    K P+ F+G+G+G +D+  F  +     + 
Sbjct: 305 DAVILTKADADARGGAALSIGYMIKRPIIFMGIGQGYDDIMEFKPEWMVEQLF 357


>gi|329936732|ref|ZP_08286439.1| Signal recognition particle receptor protein [Streptomyces
           griseoaurantiacus M045]
 gi|329303962|gb|EGG47845.1| Signal recognition particle receptor protein [Streptomyces
           griseoaurantiacus M045]
          Length = 398

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 175/308 (56%), Gaps = 5/308 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
             +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q++V
Sbjct: 92  EPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELV 151

Query: 68  EELLTK-RYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGK 124
           E L  + R     + Q +   + E +  +L+P              P +++VVGVNG GK
Sbjct: 152 ERLRERVRVLGTRTPQELRTLLREELLTILVPEFDRTVKTDSNLDTPGIVMVVGVNGTGK 211

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++A++
Sbjct: 212 TTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFD 271

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A K+      DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATTGQN
Sbjct: 272 AVKEGIEAGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAP--LDEVLLVLDATTGQN 329

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q  +F  V   +G+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF  +
Sbjct: 330 GLVQARVFAEVVDISGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPFEPE 389

Query: 305 DFSAVITG 312
            F   + G
Sbjct: 390 AFVDALIG 397


>gi|296109711|ref|YP_003616660.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus infernus ME]
 gi|295434525|gb|ADG13696.1| signal recognition particle-docking protein FtsY
           [Methanocaldococcus infernus ME]
          Length = 370

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 96/270 (35%), Positives = 148/270 (54%), Gaps = 16/270 (5%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS---------ELIHKMLMPLSKPFNWD 106
           +D+ + V +K+++ +  +   K +S    + ++           ++ +  + L +    +
Sbjct: 98  ADVALEVVEKMIDSIKKELVGKKISPDDNVEEIVYNAVKNSILNILSREKIDLEEIIQKN 157

Query: 107 FS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               +P VI+ VG+NG GKTT I KL+ K+ + G  V+LAAGDTFR+ AI+QL+  A R 
Sbjct: 158 RKEGKPTVIVFVGINGTGKTTSIAKLAYKLKNKGYSVVLAAGDTFRAGAIEQLEEHAKRI 217

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +  + G+DAAA+ Y+A + A+AKK+DV++ DTAGR   N  LM  I K++RV K  
Sbjct: 218 GVKVIKQKPGADAAAVIYDAIQHAKAKKIDVVLADTAGRQATNINLMDEIKKVVRVTK-- 275

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  V+ V DA TG +A+ Q E F+   G  G+I+TK+D  A+GG  I I      P
Sbjct: 276 ----PDLVIFVADALTGNDAIFQAEEFNKAVGIDGVILTKVDADAKGGAAISIGYAIGKP 331

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + +LGVG+   DL  F        I G  D
Sbjct: 332 ILYLGVGQRYEDLIEFSPDFIIKKIFGEED 361


>gi|88608106|ref|YP_506423.1| signal recognition particle protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600275|gb|ABD45743.1| signal recognition particle protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 449

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 148/309 (47%), Gaps = 19/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLT---- 72
           F S S K+   +  I +   +     D    +L    + +D+ + V ++ +  +      
Sbjct: 2   FDSLSKKIGGALDGIKNRGVITEKEFDDFVRKLRLTFLEADVSLPVTKQFIANVRESVIG 61

Query: 73  KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K   K +S   V+   V E + K+L   S+ F +    +  +++ VG+ GVGKTT   KL
Sbjct: 62  KSRVKGISTPAVIGSVVKEELVKILGGESQKFEFPKFGK-QILMFVGLQGVGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK--Q 188
           +  +     K +L +  D +R AA  QL+I A +   D V    G D  A+  +      
Sbjct: 121 ALLIRKKFKKNILLSSVDIYRPAARKQLEILAKQIDVDTVPIVEGEDVDAIVKKTLDLFN 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
              +  DVL++DTAGR   +S+LM  +  +   L+      P  + QVLDA  GQ++L  
Sbjct: 181 NSHEGYDVLMVDTAGRSQIDSVLMEELKVIKNRLQ------PSEIFQVLDAMMGQDSLNV 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              FH+  GTTG+I++++D  AR G ++ +  +  +P+ F G GE +NDLE F  +  + 
Sbjct: 235 ARTFHSEIGTTGVIVSRLDSDARVGSVLSVRQSVGLPIRFCGAGERVNDLEEFHPERMAG 294

Query: 309 VITGCLDYG 317
            I G  D  
Sbjct: 295 RIMGAGDIA 303


>gi|1929401|emb|CAA71224.1| ftsY [Mycoplasma mycoides]
          Length = 412

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 106/306 (34%), Positives = 181/306 (59%), Gaps = 10/306 (3%)

Query: 23  STSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
            ++    + I  +    ++ DD   EELED+LI++D+G+ +  K V  L+ K+  +D S 
Sbjct: 105 KSAFNFSKDIKKLSKKYKQADDEFFEELEDVLIQTDMGMKMVLK-VSNLVRKKTKRDTSF 163

Query: 82  QRVLYDVSELIHKMLMP---LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +   + E +++        +K +  DF  +R ++ ++VGVNG GKTT + K++   ++
Sbjct: 164 ENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE 223

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKK 193
            G KV++AA DTF + A  QL+ W         D V  +++ +D A++ ++A K+A+ + 
Sbjct: 224 LGYKVLIAAADTFSAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQN 283

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+L+IDTAGRL N + LMA + KM +++++++  APH VL V+DATTGQN + Q E F 
Sbjct: 284 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFS 343

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            VA  +G+I+TKMD T++GG  + I     IP+  +GVGE ++DL  F    +   ++  
Sbjct: 344 KVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSSG 403

Query: 314 LDYGEE 319
              G+E
Sbjct: 404 FMQGDE 409


>gi|237749681|ref|ZP_04580161.1| signal recognition particle protein [Helicobacter bilis ATCC 43879]
 gi|229374719|gb|EEO25110.1| signal recognition particle protein [Helicobacter bilis ATCC 43879]
          Length = 290

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 106/300 (35%), Positives = 164/300 (54%), Gaps = 14/300 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           F  TS  +   +      ++++  + EE+   LI SDI   + +K+++ L        + 
Sbjct: 5   FRKTSENIARFLGQ--KQQKIEKSMLEEI---LIESDINYEIIEKMLDNLDENVSRDALR 59

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           V    +   E  +       K    +    P V LV GVNG GKTT I KL+K+  D   
Sbjct: 60  VAIERFFRGESYYD------KIRFQEIEESPIVYLVFGVNGAGKTTTIAKLAKRFKDNNK 113

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           KV+L AGDTFR+AAI+QL++W+++   + V ++   D +ALA++    A+A+ +D  IID
Sbjct: 114 KVILGAGDTFRAAAIEQLQLWSEKIGVEIVTTKHAHDPSALAFDTINAAKARNMDYAIID 173

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL N + L   + K+ +   +   + P   + VLD T G +++ Q  +FH   G  G
Sbjct: 174 TAGRLPNQTNLKNELIKISKTCSKALENKPFHKILVLDGTQGSSSIEQARIFHEALGLDG 233

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320
           +I+TKMDGT++GG ++ I+   K+P+ FLGVGE  ++L  F  KDF   I G LD   EK
Sbjct: 234 IIITKMDGTSKGGAILSIIHEFKLPILFLGVGEKADELIAFEEKDF---INGLLDSIFEK 290


>gi|42543233|pdb|1OKK|D Chain D, Homo-Heterodimeric Complex Of The Srp Gtpases
 gi|315113202|pdb|2XKV|D Chain D, Atomic Model Of The Srp-Ftsy Early Conformation
          Length = 303

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 168/315 (53%), Gaps = 29/315 (9%)

Query: 12  SWIRKLTKGFASTSLKLKEGI---TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +  +L  G A T  +L + I    ++       +            +D+G++  ++I++
Sbjct: 1   GFFDRLKAGLAKTRERLLKAIPWGGNLEEVLEELEMALL-------AADVGLSATEEILQ 53

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF----SHRPHVI-------LV 116
           E+         S ++ L + V E +  ML P  +            +P  +       LV
Sbjct: 54  EVRA-------SGRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLV 106

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT I KL +   + G KVM  AGDTFR+A   QL  W  R S   +    G+
Sbjct: 107 VGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGT 166

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AALAY+A +  +A+  D+L +DTAGRLH    LM  + K+ R + + DP  P  V  V
Sbjct: 167 DPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLV 226

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDA TGQN L Q + FH   G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG +
Sbjct: 227 LDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPD 286

Query: 297 DLEPFVAKDFSAVIT 311
           DL+PF  + F   + 
Sbjct: 287 DLQPFDPEAFVEALL 301


>gi|330993998|ref|ZP_08317928.1| Signal recognition particle protein [Gluconacetobacter sp. SXCC-1]
 gi|329758944|gb|EGG75458.1| Signal recognition particle protein [Gluconacetobacter sp. SXCC-1]
          Length = 453

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/292 (28%), Positives = 138/292 (47%), Gaps = 15/292 (5%)

Query: 33  TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYD 87
              +S   + + +RE +   ++ +D+ + V +  V ++  +    +V       Q V   
Sbjct: 8   RGALSEADVTEAMRE-VRLAMLDADVALPVVKDFVSKVRERAVGHEVLDSISPGQAVAKI 66

Query: 88  VSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLA 145
           V++ +   L      P N + +  P  IL+VG+ G GKTT  GK+++++      KV+LA
Sbjct: 67  VNDALIDALGGAGAVPLNLNAA-PPVPILMVGLQGSGKTTTSGKIARRLAQRERKKVLLA 125

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           + DT R AA  QL   A+R     +    G     +A  A    + +  D++I+DTAGRL
Sbjct: 126 SLDTQRPAAQLQLAQLAERAGVASLPIIAGQTPVQIAQRAMDTGRREGYDIVILDTAGRL 185

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             +  LM  +  +           P   L V+DA TGQ+A+   + F+   G TG++MT+
Sbjct: 186 SIDEALMDEVRAI------RAETDPAETLLVVDAMTGQDAVNTAKAFNEAVGVTGVVMTR 239

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           MDG ARGG  + +      P+   G GE ++ LE F  +  +  I G  D  
Sbjct: 240 MDGDARGGAALSMRAITGAPIKLTGSGEKLDALEEFHPERVAGRILGLGDIA 291


>gi|322379443|ref|ZP_08053813.1| Signal recognition particle receptor [Helicobacter suis HS1]
 gi|322380946|ref|ZP_08055012.1| cell division protein FtsY [Helicobacter suis HS5]
 gi|321146618|gb|EFX41452.1| cell division protein FtsY [Helicobacter suis HS5]
 gi|321148152|gb|EFX42682.1| Signal recognition particle receptor [Helicobacter suis HS1]
          Length = 293

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 97/286 (33%), Positives = 161/286 (56%), Gaps = 8/286 (2%)

Query: 28  LKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
            K+ I ++ S  +  D     E +E++LI  D+   + +K++E L  +     + V  + 
Sbjct: 6   FKKTIQNVASLLKNKDATFSKESIEEILIGFDVQYDLVEKLLEHLPEQIKRNHLEVALMR 65

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           +   E  +       K        +P V L++GVNG GKTT I KL+KK    G KV+L 
Sbjct: 66  FLRKESYYD------KVSLKPIESKPLVSLILGVNGAGKTTTIAKLAKKYLLNGQKVILG 119

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           AGDTFR+AA+ QL++W ++   + + +   SD +ALAY   +   A+ +D +IIDTAGRL
Sbjct: 120 AGDTFRAAAVKQLQLWGEKLQLEVISAGQNSDPSALAYNTIEAGTARGMDQIIIDTAGRL 179

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           HN + L   + K+ +V  +    AP+  + +LD T G +AL Q ++FH      G+I+TK
Sbjct: 180 HNQTNLKNELLKISKVCSKALKGAPYYKILILDGTQGSSALEQAKIFHESLELDGVIVTK 239

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +DGT++GG ++ I+   ++P+ +LGVGE  +DL  F  +++   + 
Sbjct: 240 LDGTSKGGCILSILYELQLPILYLGVGEKEDDLIVFEEREYIKSLL 285


>gi|321309549|ref|YP_004191878.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Mycoplasma haemofelis str. Langford 1]
 gi|319801393|emb|CBY92039.1| signal recognition particle receptor protein FtsY (alpha subunit)
           [Mycoplasma haemofelis str. Langford 1]
          Length = 320

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 154/298 (51%), Gaps = 14/298 (4%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           + L      +S        D    +++D    + LE+ LI  D G ++++ +        
Sbjct: 23  KDLGSSLKKSSGFFSSIFGDFWRRKKVDQEFVQSLEENLISLDFGYSLSEYL-------- 74

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKL 131
                S      D+ + I   L+ + K           R +++LVVG NGVGKTT I KL
Sbjct: 75  SKSISSSFSKSGDLLDSIKGELLSVYKWEEPSLNIQKGRRNIVLVVGSNGVGKTTSIAKL 134

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQ 190
           +    +   KV+L AGDTFR+ A++QL IWA++ + D V  S    D +AL Y A  +  
Sbjct: 135 ANYFKNEDFKVLLVAGDTFRAGAVEQLNIWAEKLNIDIVNPSRAMEDPSALIYRALSEYT 194

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               D++I DT+GR HNN  L+  + K+ R +K+ DP +PH  L VLD+T GQ++L Q +
Sbjct: 195 D--YDLVICDTSGRQHNNKNLLQELNKVHRTIKKFDPSSPHESLLVLDSTIGQSSLLQAQ 252

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            F   +  +G+++TKMD   RGG +  I     IPV FLG GE I+DL  F  ++  +
Sbjct: 253 QFLDNSEISGIVLTKMDSLTRGGIIFSIREKFGIPVKFLGTGESIDDLYIFDLEEVIS 310


>gi|58697425|ref|ZP_00372729.1| signal recognition particle-docking protein FtsY [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58536153|gb|EAL59753.1| signal recognition particle-docking protein FtsY [Wolbachia
           endosymbiont of Drosophila simulans]
          Length = 233

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 109/228 (47%), Positives = 149/228 (65%), Gaps = 2/228 (0%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
             +   I  +L P+ +P   +   +PH+I+V GVNG GKTT IGKL+ K  +    VML 
Sbjct: 7   QQLVNEIEAILNPVVQPLILN--KKPHIIMVCGVNGNGKTTTIGKLAYKYKEMRKSVMLV 64

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A DTFR+AA +QL IWA+R+    V  E GSD+A++AY A  QA    VDV++IDTAGRL
Sbjct: 65  ACDTFRAAASEQLNIWAERSDCLIVTGEYGSDSASVAYRAVSQAIKDNVDVVLIDTAGRL 124

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            NN  LM  + K+ R +K+LD  APH V+ VLDATTGQNA  Q+E F  +   TGLI+TK
Sbjct: 125 QNNVNLMEELSKIYRTIKKLDGTAPHDVILVLDATTGQNAYSQLEAFSKMVNVTGLIVTK 184

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +DGTA+GG +I +   +KI ++ +G+GE I DL  F +K+F+  +  C
Sbjct: 185 LDGTAKGGVVIGLAEAYKIKLHAIGIGENIEDLREFTSKEFAEALFNC 232


>gi|126460434|ref|YP_001056712.1| signal recognition particle-docking protein FtsY [Pyrobaculum
           calidifontis JCM 11548]
 gi|126250155|gb|ABO09246.1| signal recognition particle-docking protein FtsY [Pyrobaculum
           calidifontis JCM 11548]
          Length = 305

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 17/310 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              +L + F+     +   +T+     +  +    +L   L+ SD+ V VA  +VEEL  
Sbjct: 1   MFDRLKRTFSKFVNAVVSAVTEDTLGEKEVEEFVTDLYLELVESDVAVEVADALVEELKR 60

Query: 73  KRYAKDV-----SVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILVVGVNG 121
           +     V         V   V + + ++L  +       +        RP V++ +G NG
Sbjct: 61  RLVGLKVPRFGDKEGAVKRAVVDSVLQILSDVPDVDFYEEGGKLLDRARPVVVMFLGPNG 120

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT + KL+  + + G  V+ AA DTFR+ A +QL+    R     +    G+D A++
Sbjct: 121 YGKTTTLAKLAYHLMERGYTVVGAAADTFRAGAREQLEEHGRRVGFKVIGGPYGADPASV 180

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A + A+++    ++IDTAGR+H ++ LM  + K+ RV +      PH  + V DA  
Sbjct: 181 AFDAVQHARSRGHHFVLIDTAGRMHTDANLMEELRKIQRVAE------PHFSIFVFDAQL 234

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G  AL     +       G+I TK+D   +GG ++  + T K PVYFLGVG+   DL  F
Sbjct: 235 GNEALEIARYYSKYVRIDGMIATKVDAYPKGGSILTFMYTLKRPVYFLGVGQSYKDLVKF 294

Query: 302 VAKDFSAVIT 311
           V  D+   + 
Sbjct: 295 VKLDYVKQLV 304


>gi|318056554|ref|ZP_07975277.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           SA3_actG]
 gi|318080907|ref|ZP_07988239.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           SA3_actF]
          Length = 407

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 173/311 (55%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 98  EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQ 157

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVILVVGVNG 121
           ++VE L  +           L  +       L+               +P +++VVGVNG
Sbjct: 158 ELVERLRERVRVLGTRTTDELRTLLREELLTLVGADTDRTVHTEAAPDKPGIVMVVGVNG 217

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 218 TGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 277

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+  A+K D ++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 278 AFDAVKEGIAEKADAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAP--VDEVLLVLDATT 335

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 336 GQNGLVQARVFAEVVSITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPF 395

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 396 EPGAFVDALIG 406


>gi|14719790|pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
           A. Ambivalens
          Length = 297

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 137/297 (46%), Gaps = 14/297 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
             +    +++ +T   S  +  +   +EL+  LI +D+ V +   +  ++  +   +   
Sbjct: 4   LDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPP 63

Query: 81  V-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 +  +  V + +  +     +P        P+VI++VGV G GKTT  GKL+   
Sbjct: 64  TYIERREWFIKIVYDELSNLFGGDKEPKVIP-DKIPYVIMLVGVQGTGKTTTAGKLAYFY 122

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV L   D +R AA++QL+    +            D   +A    ++  ++K++
Sbjct: 123 KKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKME 182

Query: 196 VLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           ++I+DTAGR      + L+  +  +   +K      P  V  V+DA+ GQ A      F+
Sbjct: 183 IIIVDTAGRHGYGEEAALLEEMKNIYEAIK------PDEVTLVIDASIGQKAYDLASKFN 236

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
             +    +I+TKMDGTA+GGG +  V      + F+G GE I++LE F  + F A +
Sbjct: 237 QASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARL 293


>gi|329766354|ref|ZP_08257900.1| signal recognition particle-docking protein FtsY [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137123|gb|EGG41413.1| signal recognition particle-docking protein FtsY [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 464

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 149/312 (47%), Gaps = 20/312 (6%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              KL   F++ +  L E     ++ + + + +  ELE  L+ SD+   V   I  +L  
Sbjct: 1   MFDKLRNAFSNAAKSLGE---KELNEKDI-ELILTELEISLLESDVASEVIDSIKSDLKN 56

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPL----------SKPFNWDFSHRPHVILVVGVNGV 122
                 V    +   V + +   +  L           K      + +P +IL VG+NG 
Sbjct: 57  SLIGSRVEKNTIEKFVKDSLISSISTLFDEAGTIDLFEKINEKKKTGQPFLILFVGINGT 116

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT + K++  +  A   +++AA DTFR+ AI+QL+   +R +   V     SD AA+A
Sbjct: 117 GKTTSLAKVAHMLQQAKYSLVVAAADTFRAGAIEQLREHTNRLNLKLVAQNYNSDPAAVA 176

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +A   A++ K+D ++IDTAGR+  +  LM  I K+ +V+       P   + V D+  G
Sbjct: 177 RDAVLYAKSHKMDCVLIDTAGRMQTSKNLMEQIAKITKVVN------PDFKIFVGDSLAG 230

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
            + + Q   F       G I+TK D  ARGG  + IV     PV +LGVG+  +DL+PF 
Sbjct: 231 NDTVNQAREFFEHVKFNGSILTKSDADARGGAALSIVKITSTPVLYLGVGQEYSDLKPFD 290

Query: 303 AKDFSAVITGCL 314
            + F   + G L
Sbjct: 291 KQTFLETVFGSL 302


>gi|221124258|ref|XP_002159557.1| PREDICTED: similar to Signal recognition particle protein 54k
           CG4659-PA [Hydra magnipapillata]
          Length = 419

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 118/251 (47%), Gaps = 8/251 (3%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            V  L  +        Q ++  V+  +   +       N   +  P VIL+ G+ G GKT
Sbjct: 21  FVGALGQEVLGSLQPGQVLVSIVNRELAATMGEGVSDINL-AAQPPAVILMSGLQGAGKT 79

Query: 126 TVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T  GKL+K + +    KV+  +GD +R AAI+QLK    +  A++  S    +   +   
Sbjct: 80  TTTGKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAGAEWFPSTPDQNPVDIGRA 139

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+    DVL++DTAGRL  +  LM+ I  +   L       P   L V+DA  GQ+
Sbjct: 140 ALDYAKKHFFDVLLVDTAGRLAIDEALMSEIKNLHAALN------PVETLFVVDAMQGQD 193

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   + F      TG+I+TK DG +RGG  + +      P+ F G  E ++ LE F A+
Sbjct: 194 AVNTAKAFKEALPLTGIILTKTDGDSRGGAALSVRQITGAPIKFAGTSEKLDGLEVFDAE 253

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 254 RHAGRILGMGD 264


>gi|118474225|ref|YP_892203.1| signal recognition particle protein [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261885666|ref|ZP_06009705.1| signal recognition particle protein [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118413451|gb|ABK81871.1| signal recognition particle protein [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 448

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/300 (27%), Positives = 142/300 (47%), Gaps = 16/300 (5%)

Query: 28  LKEGITDIISSRR-LDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
           + E +   ++  + +DD        + L+  L+++D+   V +++V  + +      +  
Sbjct: 5   IGESLKSAVNKLKFVDDEKALKNALDTLKKALLKADVHHKVTKELVNLVESDLKKTSIGQ 64

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           ++ L  +   +  +L   +           S+ P V+L+ G+ G GKTT   KL+  +  
Sbjct: 65  KQFLDSIKSNLTSILTAPNDGNKGSGFVYASNPPTVVLMAGLQGGGKTTTTVKLANYLKV 124

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV++AA D  R AA++QL+        +    E  +D   +A  A ++A+ +  DVL
Sbjct: 125 RKKKVLIAACDLQRLAAVEQLRQLCTANELELFYMENENDPIKVAKNALQKAKNELYDVL 184

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           ++DTAGRL  +  LM+ I  +   +       PH +  V DA +GQ+ ++    F+   G
Sbjct: 185 LVDTAGRLAIDETLMSQIKDIKSTIN------PHEIFYVADAMSGQDGVKTAASFNEALG 238

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            TG+I++K D   +GG  I I     IP+ F+GVGE   DLE F+       I G  D  
Sbjct: 239 ITGVILSKFDADTKGGVAIGIAKQINIPLRFVGVGEKPADLESFIPDRIVGRIMGEGDLA 298


>gi|15618880|ref|NP_225166.1| cell division protein FtsY [Chlamydophila pneumoniae CWL029]
 gi|15836504|ref|NP_301028.1| cell division protein ftsY [Chlamydophila pneumoniae J138]
 gi|16752059|ref|NP_445425.1| signal recognition particle protein FtsY [Chlamydophila pneumoniae
           AR39]
 gi|4377298|gb|AAD19109.1| Cell Division Protein FtsY [Chlamydophila pneumoniae CWL029]
 gi|7189800|gb|AAF38675.1| signal recognition particle protein FtsY [Chlamydophila pneumoniae
           AR39]
 gi|8979345|dbj|BAA99179.1| cell division protein ftsY [Chlamydophila pneumoniae J138]
 gi|269302762|gb|ACZ32862.1| signal recognition particle-docking protein FtsY [Chlamydophila
           pneumoniae LPCoLN]
          Length = 290

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 148/284 (52%), Gaps = 4/284 (1%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
            +  +  +   + +   + E+ E L   +D G  + +++   L  +    D S  + L  
Sbjct: 5   FRNKLQSLF-KKNISLDLIEDAESLFYEADFGTELTEELCARLR-RTKKADASTIKDLIT 62

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           V  L+ + L  L    +     RP V L++G NG GKTT   KL+    +    VML A 
Sbjct: 63  V--LLRESLEGLPSQASQSSQTRPIVSLLLGTNGSGKTTTAAKLAHYYKERSESVMLVAT 120

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+A +DQ ++WA+     FV  + G DAAA+A++  + A A+    +IIDT+GRLH 
Sbjct: 121 DTFRAAGMDQARLWANELGCGFVSGQPGGDAAAIAFDGIQSAIARGYSRVIIDTSGRLHV 180

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +  LM  + K++ V  +    APH +   +D+T G NA+ QV +FH V   +GLI TK+D
Sbjct: 181 HGNLMKELSKIVSVCGKALEGAPHEIFMTVDSTLGNNAIEQVRVFHDVVPLSGLIFTKVD 240

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G+A+GG L  I    KIP  F+G GE + DL  F    F   + 
Sbjct: 241 GSAKGGTLFQIAKRLKIPTKFIGYGESLKDLNEFDLDLFLNKLF 284


>gi|295836302|ref|ZP_06823235.1| signal recognition particle FtsY [Streptomyces sp. SPB74]
 gi|295825944|gb|EFG64559.1| signal recognition particle FtsY [Streptomyces sp. SPB74]
          Length = 411

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 173/311 (55%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 102 EVPEPTAGRLVRLRTRLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQ 161

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVILVVGVNG 121
           ++VE L  +           L  +       L+               +P +++VVGVNG
Sbjct: 162 ELVERLRERVRVLGTRTPDELRTLLREELLTLVGADTDRTVHTEAAPDKPGIVMVVGVNG 221

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 222 TGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 281

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+  A+K D ++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 282 AFDAVKEGVAEKADAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAP--VDEVLLVLDATT 339

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF
Sbjct: 340 GQNGLIQARVFAEVVSITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADDLAPF 399

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 400 EPGAFVDALIG 410


>gi|42543563|pdb|1RJ9|A Chain A, Structure Of The Heterodimer Of The Conserved Gtpase
           Domains Signal Recognition Particle (Ffh) And Its
           Receptor (Ftsy)
          Length = 304

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 170/316 (53%), Gaps = 29/316 (9%)

Query: 11  LSWIRKLTKGFASTSLKLKEGI---TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           + +  +L  G A T  +L + I    ++       +            +D+G++  ++I+
Sbjct: 1   MGFFDRLKAGLAKTRERLLKAIPWGGNLEEVLEELEMALL-------AADVGLSATEEIL 53

Query: 68  EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF----SHRPHVI-------L 115
           +E+         S ++ L + V E +  ML P  +            +P  +       L
Sbjct: 54  QEVRA-------SGRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVL 106

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           VVGVNGVGKTT I KL +   + G KVM  AGDTFR+A   QL  W  R S   +    G
Sbjct: 107 VVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG 166

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D+AALAY+A +  +A+  D+L +DTAGRLH    LM  + K+ R + + DP  P  V  
Sbjct: 167 TDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL 226

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDA TGQN L Q + FH   G TG+I+TK+DGTA+GG LIPIV T K+P+ F+GVGEG 
Sbjct: 227 VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGP 286

Query: 296 NDLEPFVAKDFSAVIT 311
           +DL+PF  + F   + 
Sbjct: 287 DDLQPFDPEAFVEALL 302


>gi|126179908|ref|YP_001047873.1| signal recognition particle-docking protein FtsY [Methanoculleus
           marisnigri JR1]
 gi|125862702|gb|ABN57891.1| signal recognition particle-docking protein FtsY [Methanoculleus
           marisnigri JR1]
          Length = 354

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 158/314 (50%), Gaps = 21/314 (6%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +   ES ++  K+          L      ++  + +++ + E LE +L+ +D+ + V  
Sbjct: 53  QEGQESPTFFEKVK--------VLVREREVLLQEKDVEEPLFE-LEMVLLENDVALPVTD 103

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV-----SELIHKMLMPLSKPFNWDFSH-RPHVILVVG 118
           +I+  +      +   +   + D+        +  +L        +   H RP  IL  G
Sbjct: 104 EIIARMRRDLVGRHRKIGASVDDLVVSTLRSALCGVLGEGLDLSRYIREHERPVKILFTG 163

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT + K+ + +   G  V++ AGDTFR+ AI+Q++  ADR     +  + G+D 
Sbjct: 164 VNGTGKTTTVAKVGQYLQTNGFTVVIGAGDTFRAGAIEQIRTHADRLGIKTIQHQAGADP 223

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           +A+ ++A + A+A  +DV++ DTAGR HN + LM  + K+ RV+K      P  V+ V +
Sbjct: 224 SAVLFDAVQYAKAHDIDVVLADTAGRFHNRANLMNQLDKIRRVMK------PDLVVYVDE 277

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  G +A+ + + F+   GT  +++TK D   +GG  I +  T   P+ FLG G+G +D+
Sbjct: 278 AVAGNDAVIRADEFNKAVGTDAVVLTKADMDPKGGAAISVAHTVGKPILFLGTGQGYDDI 337

Query: 299 EPFVAKDFSAVITG 312
            PF  +     + G
Sbjct: 338 VPFEPRAVVNELLG 351


>gi|254796898|ref|YP_003081735.1| signal recognition particle protein [Neorickettsia risticii str.
           Illinois]
 gi|254590134|gb|ACT69496.1| signal recognition particle protein [Neorickettsia risticii str.
           Illinois]
          Length = 449

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 148/309 (47%), Gaps = 19/309 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLT---- 72
           F S S K+   +  I +   +     D    +L    + +D+ + V ++ +  +      
Sbjct: 2   FDSLSKKIGGALDGIKNRGVITEKEFDDFVRKLRLTFLEADVSLPVTKQFIANVKESVIG 61

Query: 73  KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K   K +S   V+   V E + K+L   S+ F +    +  + + VG+ GVGKTT   KL
Sbjct: 62  KSRVKGISTPAVIGSVVKEELVKILGGESQKFEFPKFGK-QIFMFVGLQGVGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK--Q 188
           +  +     K +L +  D +R AA  QL+I A +   D V    G D  A+  +      
Sbjct: 121 ALLIRKKFKKNILLSSVDIYRPAARKQLEILAKQIDVDSVPIVEGEDVDAIVKKTLDLFN 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
              +  DVLI+DTAGR   +S+LM  +  +   L+      P  + QVLDA  GQ++L  
Sbjct: 181 NSNENYDVLIVDTAGRSQIDSVLMEELRVIKNCLQ------PSEIFQVLDAMMGQDSLNV 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + FH+  GTTG+I++++D  AR G ++ +  +  +P+ F G GE +NDLE F  +  + 
Sbjct: 235 AKTFHSEIGTTGVIVSRLDSDARVGSVLSVRQSVGLPIRFCGAGERVNDLEEFHPERMAG 294

Query: 309 VITGCLDYG 317
            I G  D  
Sbjct: 295 RIMGAGDIA 303


>gi|333024184|ref|ZP_08452248.1| putative signal recognition particle FtsY [Streptomyces sp. Tu6071]
 gi|332744036|gb|EGJ74477.1| putative signal recognition particle FtsY [Streptomyces sp. Tu6071]
          Length = 407

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 173/311 (55%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 98  EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQ 157

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVILVVGVNG 121
           ++VE L  +           L  +       L+               +P +++VVGVNG
Sbjct: 158 ELVERLRERVRVLGTRTTDELRTLLREELLTLVGADTDRTVHTEAAPDKPGIVMVVGVNG 217

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 218 TGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 277

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+  A+K D ++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 278 AFDAVKEGIAEKADAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAP--VDEVLLVLDATT 335

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 336 GQNGLVQARVFAEVVSITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPF 395

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 396 EPGAFVDALIG 406


>gi|330802872|ref|XP_003289436.1| signal recognition particle 54 kDa subunit [Dictyostelium
           purpureum]
 gi|325080478|gb|EGC34032.1| signal recognition particle 54 kDa subunit [Dictyostelium
           purpureum]
          Length = 516

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 146/304 (48%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY- 75
            A    +L   + ++  S  +++     + +E+ + L +SD+ +++  ++ + +  K   
Sbjct: 3   LAELGNQLSAALRNLNESTIVNEDTINTLLKEIGNALSKSDVSMSLIIQMRKNIKEKVKL 62

Query: 76  ---AKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ ++++  V  E + +++ P   P       + +V++ VG+ G GKTT + KL
Sbjct: 63  DQIAAGLNKRKIIRKVVFEELIRLVDPGV-PLWKPVKGKSNVVMFVGLQGAGKTTSVTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G    +   DTFR+ A DQ++  A +    +  S+   D   +A       + 
Sbjct: 122 AYYYKKKGWSTAIVCADTFRAGAFDQVRHNAAKGKIQYYGSDTEKDPVVVAKAGVDIFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR   +S L   + ++   +K      P +V+ V+D++ GQ A  Q   
Sbjct: 182 EGTEIIIVDTSGRHKQDSELFEEMKQIETAVK------PDNVIFVMDSSIGQAAYEQATA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TKMDG ++GGG +  +     P+ F+G GE + DL+ F  + F   + 
Sbjct: 236 FKNSVKVGSIIITKMDGNSKGGGALSGIAATGSPIIFIGTGEHLTDLDLFDPETFVNKLL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GNGD 299


>gi|73667168|ref|YP_303184.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ehrlichia
           canis str. Jake]
 gi|72394309|gb|AAZ68586.1| signal recognition particle subunit FFH/SRP54 (srp54) [Ehrlichia
           canis str. Jake]
          Length = 449

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 148/308 (48%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LT    +   K++     +ISS   D    EE++  L+ +D+ ++V +  +  +  
Sbjct: 1   MFESLTSSLTNIIQKMQS--KHVISSEDFD-STMEEVKIALLDADVALSVVKDFINNVKE 57

Query: 73  KRYAKD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           K   +      +  Q ++  + + + ++L    +  N   +    VI++VG+ GVGKTT 
Sbjct: 58  KIVGETTVKGVLPTQMIIKKIQDCLIEILGSEKQDLNIS-AKPFSVIMMVGLQGVGKTTT 116

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+ K+ +   +V++A+ D +R AA  QL+I   +     +          +   A +
Sbjct: 117 TAKLALKLKNKKKEVIMASLDLYRPAAQKQLEILGKQIDVKTLPIIENQAPVDIVKRAME 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            AQ     VLI+DTAGRLH + ++M  +  +       D   P  ++ V D+  GQ+A+ 
Sbjct: 177 AAQHGNYSVLILDTAGRLHIDQVMMEELKAIK------DLSCPSEIILVADSMIGQDAVN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F+   G TG+I+T++DG +RGG  + + ++   P+ F+  GE ++DL+ F     +
Sbjct: 231 VAKSFNDSIGITGVILTRVDGDSRGGAALSMKMSIGSPIKFIATGEKLSDLDDFYPDRIA 290

Query: 308 AVITGCLD 315
             I    D
Sbjct: 291 KRILNMGD 298


>gi|226371618|ref|NP_001139754.1| signal recognition particle 54 kDa protein isoform 2 [Homo sapiens]
 gi|114652598|ref|XP_001135361.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
 gi|332229143|ref|XP_003263751.1| PREDICTED: signal recognition particle 54 kDa protein isoform 2
           [Nomascus leucogenys]
 gi|194374727|dbj|BAG62478.1| unnamed protein product [Homo sapiens]
          Length = 455

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 8/244 (3%)

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 14  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 72

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 73  AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 132

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 133 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKA 186

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 187 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 246

Query: 312 GCLD 315
           G  D
Sbjct: 247 GMGD 250


>gi|296109473|ref|YP_003616422.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus infernus ME]
 gi|295434287|gb|ADG13458.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methanocaldococcus infernus ME]
          Length = 448

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 89/299 (29%), Positives = 148/299 (49%), Gaps = 20/299 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               S  L + I  I       ++L   V ++++  LI++D+ V +  KI +E+  +   
Sbjct: 2   LEKLSENLNKAINKIKNAMFVDKKLIKEVVKDIQRALIQADVNVKLVLKITKEIERRALE 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++        + ++  V E + K+L   +KP   +   R +VI++VG+ G GKTT   KL
Sbjct: 62  EEPPKGFSKKEHIIKIVYEELVKLLGEEAKPLKIEPGRR-NVIMLVGIQGSGKTTTAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K +   G +V L A DT+R AA +QLK  A++        ++      +  E   + + 
Sbjct: 121 AKYLKKKGYRVGLIAADTYRPAAYEQLKQLAEKIDVPIY-GDLSKKPEDIVKEGLNKFK- 178

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             VDV+IIDTAGR      L+  + ++  +        P  ++ V+D T GQ A  Q + 
Sbjct: 179 -NVDVVIIDTAGRHKEEKGLLEEMKRIKEISN------PDEIMLVIDGTIGQQARVQAKA 231

Query: 252 FHAVAG-TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           F    G    +I+TK+DG+A+GGG +  V   K P+ F+G GE I+D E F  K F + 
Sbjct: 232 FKDAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGTGEKIDDFEEFDPKKFISR 290


>gi|50955122|ref|YP_062410.1| signal recognition particle receptor [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50951604|gb|AAT89305.1| signal recognition particle receptor [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 291

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 107/293 (36%), Positives = 168/293 (57%), Gaps = 6/293 (2%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVS 80
             T   L   +  + + + +D+   ++LE  LI +D G  V + ++++L  K    +   
Sbjct: 3   DRTPWSLSGALRGMFAKKTIDETTWDDLETALITADFGPDVTEAVIDDLRVKVGRYRTTD 62

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
              +   + E + + L  L        S RP V+LVVGVNGVGKTT IGK +K +     
Sbjct: 63  PADLQRMLRETMGERLSRLDT--TLKLSDRPAVVLVVGVNGVGKTTTIGKFAKFLRSYDR 120

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            V++ A DTFR+AA++QL  WA+R+ A  V   + G D A++A++  ++A++   ++++I
Sbjct: 121 SVVVGAADTFRAAAVEQLATWAERSGAGIVRPQQQGQDPASVAFQTVEKAKSDGTEIVLI 180

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL     LM  + K+ RV+++  P A   VL VLDATTGQN L Q + F   AG T
Sbjct: 181 DTAGRLQTKGGLMDELSKIKRVVEKQAPIA--EVLLVLDATTGQNGLAQAQAFLEHAGVT 238

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           GL++TK+DG+A+GG ++ +     IP+  +G GEGI+DL  F    F+  + G
Sbjct: 239 GLVLTKLDGSAKGGFVLAVQERTGIPIKLVGQGEGIDDLTGFTPHVFAQQLVG 291


>gi|116671040|ref|YP_831973.1| signal recognition particle-docking protein FtsY [Arthrobacter sp.
           FB24]
 gi|116611149|gb|ABK03873.1| signal recognition particle-docking protein FtsY [Arthrobacter sp.
           FB24]
          Length = 404

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 178/311 (57%), Gaps = 6/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +        + +L +    ++  L +G+  ++SS ++D+ V +E+E+ L+ +D+G     
Sbjct: 95  ETPLPVAGRLTRLRERLVRSNNILGKGLLALLSSDKIDEDVWDEVEETLLLADLGTEPTM 154

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNG 121
           ++V+ L  +           +  +  E + K++ P           + +P V++VVGVNG
Sbjct: 155 QLVDALRERVKVLGTRTPEQVKALLREELIKLVDPTMDRSLRTDRHADKPAVMMVVGVNG 214

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAA 180
           VGKTT +GKL++ +      V+L A DTFR+AA +QL  W  R     V S++   D A+
Sbjct: 215 VGKTTTVGKLARVLVAEDKDVLLGAADTFRAAAAEQLATWGQRVGVPTVKSDVDGADPAS 274

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AYEA K    ++VDV++IDTAGRL N   LM  +GK+ RV+++L       VL VLDAT
Sbjct: 275 VAYEAVKSGIDQEVDVVMIDTAGRLQNKVGLMDELGKVKRVIEKLAE--VDEVLLVLDAT 332

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN L Q  +F  V   TG+++TK+DGTA+GG ++ I  T  +PV  +G+GEG +DL P
Sbjct: 333 TGQNGLNQARVFSEVVNITGIVLTKLDGTAKGGIVVAIQKTLGVPVKLIGLGEGADDLAP 392

Query: 301 FVAKDFSAVIT 311
           F A+ F   + 
Sbjct: 393 FDAESFVDALL 403


>gi|311744094|ref|ZP_07717900.1| cell division protein FtsY [Aeromicrobium marinum DSM 15272]
 gi|311313224|gb|EFQ83135.1| cell division protein FtsY [Aeromicrobium marinum DSM 15272]
          Length = 368

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 176/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +        + +L    A ++  L +G+  I+    LD+    E+E+ L+ +D+GV    
Sbjct: 60  ERPESPQGRLVRLRARLARSNSTLGQGLLAILGRSTLDEDAWTEIEETLLAADVGVGPTT 119

Query: 65  KIVEELLTKRYAKDVSVQR--VLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNG 121
           ++V+ L T+   + V       +    EL+  +   L +         RP V+LVVGVNG
Sbjct: 120 ELVDRLRTRLRVEGVHDPAAARVALREELLALVDPSLDRSLRSTGADGRPGVVLVVGVNG 179

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT +G+L++ +      V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 180 TGKTTTVGRLARVLVAEERTVVLGAADTFRAAAADQLQTWGERVGAGVVRGPEGGDPASV 239

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            +EA ++  A   DV+++DTAGRLH  + LM  +GK+ RV+++  P     VL V+DATT
Sbjct: 240 GFEAVQRGIADGADVVLVDTAGRLHTKAGLMDELGKVKRVIEKQAPVT--EVLLVIDATT 297

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTARGG ++ +     +PV ++G+GEG +DL PF
Sbjct: 298 GQNGLTQARVFGEVTDVTGIVLTKLDGTARGGIVVAVQRELGVPVKYVGLGEGPDDLAPF 357

Query: 302 VAKDFSAVITG 312
            A++F   + G
Sbjct: 358 DAEEFVDALLG 368


>gi|296214803|ref|XP_002753861.1| PREDICTED: signal recognition particle 54 kDa protein isoform 3
           [Callithrix jacchus]
          Length = 455

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 8/244 (3%)

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 14  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 72

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 73  AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 132

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 133 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKA 186

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 187 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 246

Query: 312 GCLD 315
           G  D
Sbjct: 247 GMGD 250


>gi|315453635|ref|YP_004073905.1| putative signal recognition particle receptor protein [Helicobacter
           felis ATCC 49179]
 gi|315132687|emb|CBY83315.1| putative signal recognition particle receptor protein [Helicobacter
           felis ATCC 49179]
          Length = 295

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 100/286 (34%), Positives = 162/286 (56%), Gaps = 8/286 (2%)

Query: 28  LKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
            K+ I ++ S  +  D     EE+E++LI  D+   + +K++E L  +     + V  + 
Sbjct: 6   FKKTIQNVASLLKTKDATFSKEEMEEILIGFDVQFDLVEKLLEHLPEQIKRNHLEVALMR 65

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           +   E  +       +        +P V L++GVNG GKTT I KL+KK      KV+L 
Sbjct: 66  FLRKESYYD------QVRFKPVDTKPLVSLILGVNGAGKTTTIAKLAKKHLLNKQKVLLG 119

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           AGDTFR+AA+ QL++W ++   + + +   SD +ALAY   +   A+ VD +IIDTAGRL
Sbjct: 120 AGDTFRAAAVKQLQLWGEKLQLEVISAGQNSDPSALAYNTIEAGIARGVDQIIIDTAGRL 179

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           HN + L   + K+ RV  +   +AP+  + +LD T G +AL Q ++FH      G+I+TK
Sbjct: 180 HNQTNLKNELLKISRVCSKALNNAPYYKILILDGTQGSSALEQAKIFHESLELDGVIVTK 239

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +DGT++GG ++ I+   ++P+ +LGVGE  NDL PF   ++   + 
Sbjct: 240 LDGTSKGGCILSILYELQLPILYLGVGEKENDLIPFEEMEYVKSLL 285


>gi|291403730|ref|XP_002718184.1| PREDICTED: signal recognition particle 54kDa isoform 2 [Oryctolagus
           cuniculus]
          Length = 455

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 8/244 (3%)

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 14  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 72

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A E  ++ + 
Sbjct: 73  AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 132

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   + ++   ++      P +++ V+DA+ GQ    Q + 
Sbjct: 133 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKA 186

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  + F + + 
Sbjct: 187 FKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 246

Query: 312 GCLD 315
           G  D
Sbjct: 247 GMGD 250


>gi|119960685|ref|YP_948189.1| signal recognition particle-docking protein FtsY [Arthrobacter
           aurescens TC1]
 gi|119947544|gb|ABM06455.1| signal recognition particle-docking protein FtsY [Arthrobacter
           aurescens TC1]
          Length = 401

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 180/311 (57%), Gaps = 6/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
              +     + +L      ++  L +G+  ++S  ++D+ V +E+E+ L+ +D+G     
Sbjct: 92  DTPAPVEGRLTRLRARLIKSNNILGKGLLALLSGDKIDENVWDEVEETLLLADLGTEPTM 151

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMP-LSKPFNWDFS-HRPHVILVVGVNG 121
           ++V+ L  +           +   + E + K++ P + +  N +    RP V+LVVGVNG
Sbjct: 152 QLVDALRERVKVLGTRSPEDVKAMLREELIKLVDPGMDRSLNVERKGDRPAVVLVVGVNG 211

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAA 180
           VGKTT +GKL++ +      V+L A DTFR+AA +QL  W  R     V S+I   D A+
Sbjct: 212 VGKTTTVGKLARVLVAEDKDVLLGAADTFRAAAAEQLATWGQRVGVPTVKSDIDGADPAS 271

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AYEA K    ++VDV+++DTAGRL N + LM  +GK+ RV+++L       VL VLDAT
Sbjct: 272 VAYEAVKAGIDQEVDVVMVDTAGRLQNKTGLMDELGKVKRVIEKLAE--VDEVLLVLDAT 329

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN L Q  +F  V   TG+++TK+DGTA+GG ++ I  +  +PV  +G+GEG +DL P
Sbjct: 330 TGQNGLNQARVFAEVVNITGIVLTKLDGTAKGGIVVAIQKSLGVPVKLIGLGEGPDDLAP 389

Query: 301 FVAKDFSAVIT 311
           F A+ F   + 
Sbjct: 390 FDAESFVDALL 400


>gi|222479253|ref|YP_002565490.1| signal recognition particle-docking protein FtsY [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222452155|gb|ACM56420.1| signal recognition particle-docking protein FtsY [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 371

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 89/271 (32%), Positives = 149/271 (54%), Gaps = 13/271 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWD 106
           +LE  L+ SD+ ++VA++I++ +  K   +         ++ E  +H  L+ +     +D
Sbjct: 104 DLEMALLESDVEMSVAERILDTVREKMLGESRKQVETTGELVESALHDALLDVIAVGQFD 163

Query: 107 F------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           F      + +P  I+  GVNGVGKTT I KLS+ ++D G   ++A GDT+R+ A +Q++ 
Sbjct: 164 FEERIAEADKPVTIVFTGVNGVGKTTSIAKLSEWLADRGYSSVMANGDTYRAGANEQIQE 223

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
            ADR   + +  + G D AA+ Y+  + A+A  +DV++ DTAGRLH +  LMA + K+ R
Sbjct: 224 HADRLDRELISHDQGGDPAAVIYDGVEYAEANDIDVVLGDTAGRLHTSDDLMAQLEKIDR 283

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V+      AP   L V +A  GQ+A+ + + F+  A   G ++TK D  + GG  I +  
Sbjct: 284 VV------APDMTLFVDEAVAGQDAVNRAKEFNDAAEIDGAVLTKADADSSGGAAISVAY 337

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
               P+ FLG G+G +DL  F  ++    + 
Sbjct: 338 VTGKPILFLGTGQGYDDLTLFDPEELVESLL 368


>gi|326422481|gb|EGD71879.1| Signal recognition particle receptor [Candidatus Parvarchaeum
           acidophilus ARMAN-5_'5-way FS']
          Length = 378

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 99/276 (35%), Positives = 153/276 (55%), Gaps = 12/276 (4%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK----MLMP 98
           D +  E++ +L+ +++ ++V + I ++L  K   + VS+      ++ +I       L+ 
Sbjct: 108 DMIYSEIKTVLLENNVALSVLENIQKDLKNKLVGESVSMFGNKKYLNNVIRDSIANTLIG 167

Query: 99  LSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             K        S +P VILV+GVNG GKTT I KL K     GLK ++AAGDTFR+A+I+
Sbjct: 168 YDKEEFISKIKSKKPFVILVIGVNGAGKTTTIAKLCKLFLSKGLKPVIAAGDTFRAASIE 227

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL+I A +     +    GSD AA+A++A K A + K DV++IDTAGR   N  L+  + 
Sbjct: 228 QLEIHAKKLKVPIIKHTYGSDPAAVAFDAIKHANSAKEDVVVIDTAGRSDINKNLIEELK 287

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+ RV K      P   + + DA TG + ++Q E+F    G    I++K D   +GG ++
Sbjct: 288 KVKRVSK------PDMTIFIGDALTGNDVVKQAEVFDKEIGIDANILSKADVDKKGGAVL 341

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            I    K P+ FLGVG+G +DL PF  +  +  I G
Sbjct: 342 SISYITKKPILFLGVGQGYDDLIPFNKEKTAEFILG 377


>gi|313619619|gb|EFR91265.1| signal recognition particle protein [Listeria innocua FSL S4-378]
          Length = 363

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 7/210 (3%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRT 165
               P VI++VG+ G GKTT  GKL+  +      K +L A D +R AAI QL+    + 
Sbjct: 10  ADRPPTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQL 69

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                          +A +A  +A+ + +D +IIDTAGRLH +  LM  + ++  +    
Sbjct: 70  DMPVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEIAT-- 127

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  RGG  + I      P
Sbjct: 128 ----PTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKP 183

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+  GE +  +E F     ++ I G  D
Sbjct: 184 IKFVATGEKMEAIETFHPDRMASRILGMGD 213


>gi|159117703|ref|XP_001709071.1| SRP GTPase [Giardia lamblia ATCC 50803]
 gi|157437186|gb|EDO81397.1| SRP GTPase [Giardia lamblia ATCC 50803]
          Length = 530

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 133/303 (43%), Gaps = 24/303 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK------ 73
            FA T L   E +  ++          +E   +L  +D+     + + + + TK      
Sbjct: 16  KFAKTRLTTNEAVNALV----------DEFIGVLEAADVPARTLEPMRKSMTTKILSDPA 65

Query: 74  -RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
               +  + Q V   V + +  ML P   PF     +R +VI+ VG+ G GKTT   K  
Sbjct: 66  IMEGRANTHQVVQRIVVQELVSMLSPERPPFR-PVRNRANVIMFVGLQGAGKTTTCVKFG 124

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G +V L   DTFR+ A DQLK         F  S    D   +A +  K   + 
Sbjct: 125 AYYKRKGWRVGLVCCDTFRTGAFDQLKQNCTAVKLPFYGSYSEKDPVQIAQDGVKHFVSL 184

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             +++I+DT+GR      L   +  +   ++      PH  + VLD++ GQ A  Q + F
Sbjct: 185 NFELIILDTSGRHRQEEALFTEMKLIDSAVQ------PHDHVFVLDSSIGQAAYEQADAF 238

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                   +I+TK+DG +RGGG +  V   K P+ FLG GE I DLE F    F +V+ G
Sbjct: 239 SNAVEIGSVILTKLDGHSRGGGALAAVSATKAPIVFLGTGEKIEDLEFFDPSRFVSVMLG 298

Query: 313 CLD 315
             D
Sbjct: 299 YGD 301


>gi|55379684|ref|YP_137534.1| signal recognition particle receptor [Haloarcula marismortui ATCC
           43049]
 gi|55232409|gb|AAV47828.1| signal recognition particle receptor [Haloarcula marismortui ATCC
           43049]
          Length = 429

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 148/304 (48%), Gaps = 21/304 (6%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           +G A    KL      +I    L     ++LE  L+ SD+ ++VA +I++ +      + 
Sbjct: 136 RGLA-AKAKLMATGKTVIEEEDL-QSHLDDLELALLSSDVEMSVANEILDGVKENLTGQ- 192

Query: 79  VSVQRVLYDVSELIHKML----------MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              +R L     L+   L                     + +P  I+  GVNGVGKTT I
Sbjct: 193 --TRRRLSSTGNLVRDALRESLYDVINVGQFDFDERVQQADKPVTIVFTGVNGVGKTTSI 250

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL++   D GL  +LA GDT+R+ A +QL+  A+      +  E GSD  A+ Y+A + 
Sbjct: 251 AKLAQYFEDRGLSTVLANGDTYRAGANEQLEKHAENLDKKIITHEQGSDPTAVVYDAVEY 310

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+A  +DV++ DTAGRLH +  LMA + K+ R +       P   L V +A  GQ+A+ +
Sbjct: 311 AKANDIDVVLGDTAGRLHTSDDLMAQLEKIDRNID------PDMTLFVDEAVAGQDAVNR 364

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F+  A   G I+TK D   +GG  I +      P+ FLG G+  +DL+PF  ++   
Sbjct: 365 AREFNDAAEIDGAILTKADADPQGGAAISVAHVTGKPILFLGTGQDYDDLDPFDPEEIVD 424

Query: 309 VITG 312
            + G
Sbjct: 425 SLIG 428


>gi|16903158|gb|AAL30433.1|AF439264_1 FtsY NG domain [Haloferax volcanii]
          Length = 266

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 89/269 (33%), Positives = 141/269 (52%), Gaps = 13/269 (4%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAK-DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
             L++SD+ + VA++I+E +  K   +    V+     VSE +H  L  +     +DF  
Sbjct: 1   MALLQSDVEMQVAEEILETIREKLIGETRKQVESTGQLVSEALHDALYEVISVGQFDFDQ 60

Query: 110 ------RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
                 +P  ++  G+NGVGKTT I KL+K     G   +LA GDT+R+ A +Q++  A+
Sbjct: 61  RIAEADKPVTLIFTGINGVGKTTTIAKLAKYFEKQGYSTVLANGDTYRAGANEQIREHAE 120

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                 +  E G D AA+ Y+  + A+A  +D+++ DTAGRLH ++ LMA + K+ RV+ 
Sbjct: 121 ALDKKLIAHEQGGDPAAVIYDGVEYAEAHDIDIVLGDTAGRLHTSNDLMAQLEKIDRVVG 180

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P   L V +A  GQ+A+ +   F+  A   G I+TK D  + GG  I I     
Sbjct: 181 ------PDLTLFVDEAVAGQDAVERARQFNDAAAIDGAILTKADADSNGGAAISIAYVTG 234

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            P+ FLGVG+G + +E F  +     + G
Sbjct: 235 KPILFLGVGQGYDHIEKFDPEQMVERLLG 263


>gi|15791232|ref|NP_281056.1| signal recognition particle [Halobacterium sp. NRC-1]
 gi|169236988|ref|YP_001690188.1| signal recognition particle 54K protein [Halobacterium salinarum
           R1]
 gi|12230636|sp|Q9HMN5|SRP54_HALSA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|229558602|sp|B0R7X3|SRP54_HALS3 RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|10581860|gb|AAG20536.1| signal recognition particle [Halobacterium sp. NRC-1]
 gi|167728054|emb|CAP14842.1| signal recognition particle 54K protein [Halobacterium salinarum
           R1]
          Length = 460

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 129/301 (42%), Gaps = 14/301 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L+  +  +    R+ +     V +E++  L+++D+ V +   + E +  +   
Sbjct: 3   LDDLGSSLRGTLDTLRGKSRISEEDVDKVVKEIQRSLLQADVDVDLVMDLSESITERSLE 62

Query: 77  KDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++        D V  ++++ L+ L              I++ G+ G GKTT   K++   
Sbjct: 63  EEPPGGTSARDHVLRIVYEELVGLVGDST-PIPLEEQTIMLAGLQGSGKTTTAAKMAWWF 121

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           S  GL+  +   DTFR  A +Q    ADR   DF       D   +A +    A     D
Sbjct: 122 SKKGLRPAIVQTDTFRPGAYEQAAEMADRAEVDFYGEPDSDDPVQIARDGL--AATADAD 179

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V I+DTAGR      L      +  + +      P   L VLDA  GQ A +Q   F A 
Sbjct: 180 VHIVDTAGRHALEDDL------IAEIEEIEGVVEPDRSLLVLDAAIGQGAKQQARQFDAS 233

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G  G+ +TK+DGTA+GGG +  V      + FLG GE + D+E F    F + + G  D
Sbjct: 234 IGIDGVAITKLDGTAKGGGSLTAVNETDSTIAFLGSGETVQDIERFEPDSFISRLLGMGD 293

Query: 316 Y 316
            
Sbjct: 294 L 294


>gi|257461314|ref|ZP_05626411.1| signal recognition particle protein [Campylobacter gracilis RM3268]
 gi|257441342|gb|EEV16488.1| signal recognition particle protein [Campylobacter gracilis RM3268]
          Length = 446

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F   S   K  +  +   + +DD        E L+  L+++D+   V +  +  +     
Sbjct: 2   FEIISESFKNAVNKL---KTIDDEKALKNALETLKKALLKADVHHKVVKDFLALVEADLR 58

Query: 76  AKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              +  +  L  +   + K+L     S       S  P V L+ G+ G GK+T   KL+ 
Sbjct: 59  IGTIGQKPFLQSIKTNLTKILTAPRGSSQGFVFASTPPTVALMTGLQGSGKSTSTIKLAN 118

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            +     KV++AA D  R AA++QL+   +    +    E  SD   +A +A  +A++  
Sbjct: 119 YLKLRKKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIEGESDPLKVAQKALSKAKSGL 178

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DVL++DTAGRL  +  LMA + +M + L       PH +  V DA +GQ+ ++    F 
Sbjct: 179 YDVLLVDTAGRLAIDEALMAQLAEMKKALN------PHEIFYVADAMSGQDGIKTAAKFD 232

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            + G TG+I++K D   +GG  + I     IP+ F+G GE + DLE F+    +  I G 
Sbjct: 233 EILGLTGVILSKFDADTKGGVALGIAQQLGIPLRFIGTGEKVADLEGFIPDRITGRIMGE 292

Query: 314 LDYG 317
            D  
Sbjct: 293 GDLA 296


>gi|329764770|ref|ZP_08256364.1| GTP-binding signal recognition particle [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329138734|gb|EGG42976.1| GTP-binding signal recognition particle [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 441

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 146/304 (48%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L++ I  I+ S  +D+ + +EL    +  L++SD+ V +  +I ++L  +   
Sbjct: 2   LDNLRNNLRDAIKKIVKSSGIDEELIKELSKDVQRALLQSDVNVRLVLEITKQLEARSLN 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +           ++  + + + K+L      F++  + +  +I++ G+ G GKTTV  KL
Sbjct: 62  ETPPPGLSRKDHIVKILYDELAKLLGK-ETDFDFKPNKQNKIIML-GIQGSGKTTVTAKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K ++  G  V +   DT+R  A+ QLK   ++++ +        D+  +     K  + 
Sbjct: 120 AKFLTKQGYSVGVIGADTYRPGALVQLKTMCEKSNVEVYGEPNNKDSPDIVKNGLKHYEN 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +D++IIDTAGR      L++ + ++ +V        P   + V+D T GQ    Q E 
Sbjct: 180 LPLDIIIIDTAGRHKEEKDLLSEMEQINKVSN------PDLAILVIDGTIGQQCFNQAEA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH      G+I+TK+D +A+GGG I         + ++G GE I+DLE F    F   + 
Sbjct: 234 FHKTIPVGGIIITKLDSSAKGGGAIAASAATGAQIMYVGTGERIDDLEKFSPTRFVGRLL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|269115234|ref|YP_003302997.1| Cell division FtsY-like protein [Mycoplasma hominis]
 gi|3334189|sp|O32861|FTSY_MYCHP RecName: Full=Cell division protein ftsY homolog
 gi|2292927|emb|CAA72412.1| FtsY protein [Mycoplasma hominis ATCC 23114]
 gi|268322859|emb|CAX37594.1| Cell division protein ftsY homolog [Mycoplasma hominis ATCC 23114]
          Length = 351

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 119/298 (39%), Positives = 179/298 (60%), Gaps = 13/298 (4%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
            G + ++    E I ++ +   ++D+   E+LE++LI SDI + + Q I+ E   +   +
Sbjct: 49  AGLSKSNSSFNEHIKELQNKHNKIDEEFFEDLEEMLIMSDISIKLVQIIINECKKEVRNE 108

Query: 78  DVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           +++  +++   +E+I   L         +    N    +R +VILVVGVNG GKTT I K
Sbjct: 109 NITDPKLI---NEIIADKLFTIYTSNSVVDTTLNIK-DNRLNVILVVGVNGSGKTTSISK 164

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQA 189
           ++KK+ D G KV++AAGDTFR+AA++QL+IWA R  AD V  +E   D AA+ Y A   A
Sbjct: 165 IAKKLIDEGKKVLIAAGDTFRAAAVEQLEIWAKRVGADIVTPNENEVDPAAVVYRAIDIA 224

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           ++KK D+LI+DTAGRL N   LM  + K+ RVL    P APH  L VLDATTGQN + Q 
Sbjct: 225 KSKKYDILIVDTAGRLQNKVNLMNELAKINRVLASKIPDAPHESLLVLDATTGQNGVIQA 284

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
            +F      TG+I+TKMDGT++GG ++ I     + V ++G+GE ++DL  F    + 
Sbjct: 285 RVFKESTPLTGIILTKMDGTSKGGIVLTIKDEIGLFVKYIGLGEKVDDLAEFDLDSYI 342


>gi|269122872|ref|YP_003305449.1| signal recognition particle-docking protein FtsY [Streptobacillus
           moniliformis DSM 12112]
 gi|268314198|gb|ACZ00572.1| signal recognition particle-docking protein FtsY [Streptobacillus
           moniliformis DSM 12112]
          Length = 297

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 112/289 (38%), Positives = 174/289 (60%), Gaps = 3/289 (1%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
                      + +      + D V EELE+LLI++D+G+ +  +IVE L     +K + 
Sbjct: 7   LIKPKKGFFTKLKEFFVGEAITDEVYEELEELLIQADLGMKMTLEIVENLEKNVRSKGIK 66

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
            + ++YD  +L+    +   K  + +    R ++ILV+GVNGVGKTT IGK++ K+   G
Sbjct: 67  SKELMYDELKLLLSEKLEKFKDNSLNIQKGRLNIILVIGVNGVGKTTSIGKIAMKLKKEG 126

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V++ A DTFR+AAI+Q+++W  R   + +  + GSD AA+ ++    A++K +DV II
Sbjct: 127 KSVIIGAADTFRAAAIEQVEMWGQRAGIEVIKQKHGSDPAAVVFDTINTAKSKNIDVAII 186

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLHN   LM  + K+ +++K+      +  L V+D+TTGQN L Q  MF+ ++  T
Sbjct: 187 DTAGRLHNKVDLMKELEKIDKIIKQNVDE--YESLIVVDSTTGQNGLEQARMFNNISNIT 244

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           G+I+TK DGTA+GG +  IV     PV FLGVGEG++DL+ F  K+F  
Sbjct: 245 GVILTKFDGTAKGGIIFSIVSELNKPVKFLGVGEGVDDLKVFDCKEFIN 293


>gi|313665368|ref|YP_004047239.1| signal recognition particle-docking protein FtsY [Mycoplasma
           leachii PG50]
 gi|312949906|gb|ADR24502.1| signal recognition particle-docking protein FtsY [Mycoplasma
           leachii PG50]
          Length = 423

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 182/306 (59%), Gaps = 10/306 (3%)

Query: 23  STSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
            ++    + I  +    ++ DD   EELED+LIR+D+G+ +  K V  L+ K+  +D S 
Sbjct: 116 KSAFNFSQDIKKLSKKYKQADDEFFEELEDVLIRTDMGMKMVLK-VSNLVRKKTKRDTSF 174

Query: 82  QRVLYDVSELIHKMLMP---LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +   + E +++        +K ++ DF  +R ++ ++VGVNG GKTT + K++   ++
Sbjct: 175 ENIKDALVESLYQAYTDNDWTNKKYHIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE 234

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWAD---RTSADFV-CSEIGSDAAALAYEAFKQAQAKK 193
            G KV++AA DTFR+ A  QL+ W         D V  +++ +D A++ ++A K+A+ + 
Sbjct: 235 LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIKKAKEQN 294

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+L+IDTAGRL N   LMA + KM +++++++  APH VL V+DATTGQN + Q E F 
Sbjct: 295 YDLLLIDTAGRLQNKVNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFS 354

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
            VA  +G+I+TKMD T++GG  + I     IP+  +GVGE ++DL  F    +   ++  
Sbjct: 355 KVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSSG 414

Query: 314 LDYGEE 319
              G+E
Sbjct: 415 FMQGDE 420


>gi|134045071|ref|YP_001096557.1| signal recognition particle protein Srp54 [Methanococcus
           maripaludis C5]
 gi|166222335|sp|A4FVX4|SRP54_METM5 RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|132662696|gb|ABO34342.1| signal recognition particle subunit FFH/SRP54 (srp54)
           [Methanococcus maripaludis C5]
          Length = 450

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 150/301 (49%), Gaps = 20/301 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVA----QKIVEELLT 72
                  L + +  I       ++L   V ++++  LI+SD+ V +     ++I  + + 
Sbjct: 2   LDKLGQNLSDALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIE 61

Query: 73  KRYAKDVSVQRV-LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +   K +S +   +  V + + K+L   ++    D S +  VIL++G+ G GKTT   KL
Sbjct: 62  EAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKK-SVILLIGIQGSGKTTSAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQAQ 190
           ++ +   GL+  L A D +R AA  QLK  +++ +      E  +     +  E  ++ +
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVDITKEGMEKLK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             KVDV+IIDTAGR      L+A + +M       D   P+ ++ V+D T GQ A  Q +
Sbjct: 181 --KVDVIIIDTAGRHKEEESLLAEMKEMK------DLTNPNEIILVIDGTLGQQAKNQAK 232

Query: 251 MFHAVAGTTGLIM-TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            F       G I+ TK+DG+A+GGG +  V     P+ F+G GEG+++LE F  K F + 
Sbjct: 233 AFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISR 292

Query: 310 I 310
           I
Sbjct: 293 I 293


>gi|225620952|ref|YP_002722210.1| signal recognition particle GTPase [Brachyspira hyodysenteriae WA1]
 gi|225215772|gb|ACN84506.1| Signal recognition particle GTPase [Brachyspira hyodysenteriae WA1]
          Length = 451

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/308 (25%), Positives = 142/308 (46%), Gaps = 15/308 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               LTK  ++   K++     +++ + + D +   +++ L+ +D+ +  A K +EE   
Sbjct: 1   MFGNLTKSISNVFSKIQG--KKVLTDKDITDSLL-TIKEALLSADVSLEAADKFLEEATN 57

Query: 73  KRYAKD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +   K+         + + DV + +  M+         +   +  + L+ G+ G GKTT 
Sbjct: 58  RAIGKEKLEGVEPANQFVADVHDTLVNMIGEGESGLKLEPVEKTTITLLFGLQGSGKTTT 117

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             KL+K   D   +VML   D  R AA++QL + A      +        A  +  +A  
Sbjct: 118 SAKLAKYYKDK-RRVMLVGLDVHRPAAMEQLAVLAREVGVPYHIDTKEKKAYKILKKALS 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ ++ +++++DTAGRL  +  +M     + RV+   +       L V+D+T GQ+   
Sbjct: 177 IAKKEQYNMILVDTAGRLEIDEEMMLE---LRRVVNSANVT---EKLLVVDSTAGQSVYD 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
             + F    G  G+I+TK D   RGG  + +       V F+GVGE ++D++ F AK  +
Sbjct: 231 VAKSFQNNIGINGVILTKFDSGVRGGAALSLKYATGSSVKFVGVGEHLDDIDVFDAKRVA 290

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 291 GQILGMGD 298


>gi|161528039|ref|YP_001581865.1| GTP-binding signal recognition particle [Nitrosopumilus maritimus
           SCM1]
 gi|160339340|gb|ABX12427.1| GTP-binding signal recognition particle SRP54 G- domain
           [Nitrosopumilus maritimus SCM1]
          Length = 442

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 145/304 (47%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L + I  I+ S  +D+ + +EL    +  L++SD+ V +  +I + L  +   
Sbjct: 2   LDGLKSSLGDAIKKIVKSSGIDEELIKELSKDVQRALLQSDVNVRLVLEITKHLEERALN 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +           ++  + + +  +L   S+ F++    +  +IL+ G+ G GKTTV  KL
Sbjct: 62  ETPPPGLSRKNHIVKILYDELSNLLGNESE-FDFKPGKQNKIILL-GIQGSGKTTVASKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K ++  G KV +   DT+R  A+ QLK   ++++ +    E   D+ ++        + 
Sbjct: 120 AKFLTGQGYKVGVVGADTYRPGALVQLKTMCEKSNVEVYGEESNKDSPSIVKNGLNYFKD 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DV++IDTAGR      L+  + ++ +V        P   L V+D T GQ    Q E 
Sbjct: 180 QSLDVILIDTAGRHKEEQDLLEEMDRINKV------ADPDLALLVIDGTIGQQCFNQAEA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH      G+I+TK+D +A+GGG +         + ++G GE I+DLE F    F   + 
Sbjct: 234 FHKTIPVGGVIITKLDSSAKGGGALAASAATGAQIMYIGTGERIDDLEKFSPTRFVGRLL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|256372274|ref|YP_003110098.1| signal recognition particle protein [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008858|gb|ACU54425.1| signal recognition particle protein [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 443

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 136/305 (44%), Gaps = 20/305 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L   +  +    RL     D    E+   L+ +D+ V V   I+  +      
Sbjct: 2   FETLSGRLDGALGRLRRKSRLTQRDVDEALAEIRVALLEADVAVRVVDTILARVEEAAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNGVGKTTVIGK 130
              S      Q+V+  V + + ++L    +PF     S  P VIL+ G+ GVGKTT   K
Sbjct: 62  AMASASLTPGQQVVKAVHDELLRVLGG--EPFRLRYASTPPTVILLAGLQGVGKTTAAAK 119

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G   +L A D  R  AI+QL+I  +R     V      D   +A     +A+
Sbjct: 120 LALAQLREGRSPLLVAADLQRPGAIEQLRILGERAGVAVVSDG--DDPVTVARHGVAEAR 177

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV+I+DTAGRL  +  LM  +  +   +       PH    V+DA  GQ ++R  +
Sbjct: 178 RLGRDVVIVDTAGRLAIDEALMREVQMVSEAID------PHYRFLVVDAMVGQESVRVAQ 231

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      + +I+TK+DG ARGG  + +      P+ F  VGE + D EPF     ++ I
Sbjct: 232 AFDERLSISAVILTKLDGDARGGAALSVREVVGKPIAFASVGEKLEDFEPFYPDRMASRI 291

Query: 311 TGCLD 315
            G  D
Sbjct: 292 LGMGD 296


>gi|296116586|ref|ZP_06835196.1| signal recognition particle protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976798|gb|EFG83566.1| signal recognition particle protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 453

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 139/289 (48%), Gaps = 15/289 (5%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSE 90
           +S   + + +RE +   ++ +D+ + V +  V ++  +    +V       Q V   V++
Sbjct: 11  LSEADVTEAMRE-VRLAMLDADVALPVVKDFVNKVRERAVGHEVLDSISPGQAVAKVVND 69

Query: 91  LIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGD 148
            +   L      P N + +     IL+VG+ G GKTT  GK++ +++     KV+LA+ D
Sbjct: 70  ALIDALGGAGAVPLNLNAAAPVP-ILMVGLQGSGKTTTSGKIALRLATRERRKVLLASLD 128

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T R AA  QL+  A+R     +    G     +A  A +  + +  D++I+DTAGRL  +
Sbjct: 129 TQRPAAQLQLQQLAERAGVASLPIIAGQSPVEIARRAMEVGRREGYDIVILDTAGRLSID 188

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             LM  +  +           P   L V+DA TGQ+A+   + F+   G TG++MT+MDG
Sbjct: 189 EALMDEVRAI------RAETQPAETLLVVDAMTGQDAVNTAKAFNEAVGVTGVVMTRMDG 242

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            ARGG  + +      P+   G GE ++ LE F  +  +  I G  D  
Sbjct: 243 DARGGAALSMRAITGAPIKLTGSGEKLDALEEFHPERVAGRILGLGDIA 291


>gi|58038679|ref|YP_190643.1| Signal recognition particle protein [Gluconobacter oxydans 621H]
 gi|58001093|gb|AAW59987.1| Signal recognition particle protein [Gluconobacter oxydans 621H]
          Length = 475

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 144/311 (46%), Gaps = 23/311 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F   S K+   +  +  + +L +        E+   ++ +D+ + V +  V ++  +   
Sbjct: 2   FEQLSGKMSGVLDGLSKNGKLSEADVTEAMREVRLAMLEADVALPVVRDFVNKVRERSVG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           ++V       Q V   V++ +   L      P N   ++ P  +L+VG+ G GKTT  GK
Sbjct: 62  QEVLESVSPGQAVAKIVNDALIDALGGAGAVPLNLS-ANPPVPVLMVGLQGSGKTTTSGK 120

Query: 131 LSKKMS-DAGLKVMLAAGDTFRSAAIDQL-----KIWADRTSADFVCSEIGSDAAALAYE 184
           ++ ++S     KV+LA+ D  R AA  QL     ++ A       +    G     +A  
Sbjct: 121 IALRLSGRENKKVLLASLDVQRPAAQLQLQQLAERVNAKTGRVQALPIISGQSPVQIAKR 180

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A +  + +  DV+I+DTAGRL  +  LM  + ++  + K          L V+DA TGQ+
Sbjct: 181 ALETGRLEGYDVVILDTAGRLSIDEALMDEVREIRTLTKPA------ETLLVVDAMTGQD 234

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+   + F+   G TG++M++MDG ARGG  + +      P+   G GE +  LE F  +
Sbjct: 235 AVNTAKAFNEAVGITGVVMSRMDGDARGGAALSMKAITGAPIKLTGSGENLEALEEFHPE 294

Query: 305 DFSAVITGCLD 315
             +  I G  D
Sbjct: 295 RVAGRILGLGD 305


>gi|220912979|ref|YP_002488288.1| signal recognition particle-docking protein FtsY [Arthrobacter
           chlorophenolicus A6]
 gi|219859857|gb|ACL40199.1| signal recognition particle-docking protein FtsY [Arthrobacter
           chlorophenolicus A6]
          Length = 400

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 180/311 (57%), Gaps = 6/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +        + +L +    ++  + +G+  ++SS ++D+ V +E+E+ L+ +D+G     
Sbjct: 91  ETPLPVAGRLTRLRERLIRSNSIMGKGLLALLSSDKIDENVWDEVEETLLLADLGTEPTM 150

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMP-LSKPFNWDF-SHRPHVILVVGVNG 121
           ++V+ L  +           +   + E + K++ P + +  N      +P V++VVGVNG
Sbjct: 151 QLVDALRERVKVLGTRSPEHVKAMLREELIKVVDPTMDRTLNVQRHGDKPAVMMVVGVNG 210

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAA 180
           VGKTT +GKL++ +      V+L A DTFR+AA +QL  W  R     V S+I   D A+
Sbjct: 211 VGKTTTVGKLARVLVAEDKDVILGAADTFRAAAAEQLATWGQRVGVPTVKSDIDGADPAS 270

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AYEA K    ++VDV++IDTAGRL N   LM  +GK+ RV+++L       VL VLDAT
Sbjct: 271 VAYEAVKAGIDQEVDVVMIDTAGRLQNKVGLMDELGKVKRVVEKLAE--VDEVLLVLDAT 328

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN L Q  +F  V   TG+++TK+DGTA+GG ++ I  +  +PV  +G+GEG +DL P
Sbjct: 329 TGQNGLNQARVFSEVVNITGIVLTKLDGTAKGGIVVAIQKSLGVPVKLIGLGEGADDLAP 388

Query: 301 FVAKDFSAVIT 311
           F A+ F   + 
Sbjct: 389 FDAEQFVDALL 399


>gi|13507800|ref|NP_109749.1| signal recognition particle protein [Mycoplasma pneumoniae M129]
 gi|2500882|sp|P75054|SRP54_MYCPN RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|1673748|gb|AAB95741.1| signal recognition particle protein [Mycoplasma pneumoniae M129]
          Length = 450

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 127/279 (45%), Gaps = 16/279 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLM 97
             V +E+   L+ +D+ + V +  ++ +  +   + V       + +L  + + +  +L 
Sbjct: 29  QAVLKEIRIALLDADVNLLVVKNFIKAIREQTVGQTVEPGQDLQKWLLKVIKQELINILS 88

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAID 156
             ++      S RP  ++VVG+ G GKTT  GKL+  +      K ML A D +R AAID
Sbjct: 89  QPNQEIT---SKRPLKVMVVGLQGSGKTTTCGKLAVWLKKQFQQKAMLVALDIYRPAAID 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL   A++T + F              EA K  +      +I DTAGRL  N  LM  + 
Sbjct: 146 QLATLAEQTESVFFAKGT-QAPDQTTKEAVKTFKESGCQAIICDTAGRLQTNQELMDELV 204

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +   L       P  +L V+D  +GQ  +   + FH     TG I+TK+D  AR G  +
Sbjct: 205 AIKNELH------PDEILMVVDGLSGQEIINVAKEFHNRLKLTGFIITKLDSDARAGAAL 258

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +    ++P+  +G  E +  LE F  +  ++ I G  D
Sbjct: 259 SLTSLLEVPIKLMGTSEKLTGLEQFHPERIASRILGLGD 297


>gi|301633520|gb|ADK87074.1| signal recognition particle protein [Mycoplasma pneumoniae FH]
          Length = 450

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 127/279 (45%), Gaps = 16/279 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLM 97
             V +E+   L+ +D+ + V +  ++ +  +   + V       + +L  + + +  +L 
Sbjct: 29  QAVLKEIRIALLDADVNLLVVKNFIKAIREQTVGQTVEPGQDLQKWLLKVIKQELINILS 88

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAID 156
             ++      S RP  ++VVG+ G GKTT  GKL+  +      K ML A D +R AAID
Sbjct: 89  QPNQEIT---SKRPLKVMVVGLQGSGKTTTCGKLAVWLKKQFQQKAMLVALDIYRPAAID 145

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL   A++T + F              EA K  +      +I DTAGRL  N  LM  + 
Sbjct: 146 QLATLAEQTESVFFAKGT-QAPDQTTKEAVKTFKESGCQAIICDTAGRLQTNQELMDELV 204

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            +   L       P  +L V+D  +GQ  +   + FH     TG I+TK+D  AR G  +
Sbjct: 205 AIKNELH------PDEILMVVDGLSGQEIINVAKEFHNRLKLTGFIITKLDSDARAGAAL 258

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            +    ++P+  +G  E +  LE F  +  ++ I G  D
Sbjct: 259 SLTSLLEVPIKLMGTSEKLTGLEQFHPERIASRILGLGD 297


>gi|299116639|emb|CBN76263.1| PFfh, plastid Ffh subunit of the signal recognition particle
           [Ectocarpus siliculosus]
          Length = 557

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 143/313 (45%), Gaps = 32/313 (10%)

Query: 31  GITDIISS-RRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----S 80
           G+ ++ +  + + +   E    E++  L+ +D+ + V   +V+ + +K     +     +
Sbjct: 105 GVANLFTGQKTITESSVEGALNEVKRALLDADLNLMVTNTLVDAVKSKAVGMKLVDGVTA 164

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-- 138
            Q+ +  +++ + +++     P       +P VIL+ G+ G GKTT   KL+K +     
Sbjct: 165 KQQFVNVMNDELVEIMGAEQAPLARRTDGKPTVILLAGLQGTGKTTAAAKLAKYLQQEEE 224

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             KV+L AGD +R AAIDQL     R   +      G D   +     ++A   + D +I
Sbjct: 225 PKKVLLVAGDVYRPAAIDQLISLGKRIDVEVFSMGQGVDPVEITKAGLERAVEGEFDTVI 284

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGR   +  LM  +  +              VL V+DA TGQ A     +F+   G 
Sbjct: 285 VDTAGRQVVDDTLMTELKDI------QVASEADEVLLVVDAMTGQEAATLASVFNEKIGI 338

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE-----------PFVAKDF- 306
           TG ++TKMDG  RGG  + +    + P+ F+G+GE +++ E            F   DF 
Sbjct: 339 TGAVLTKMDGDTRGGAALSVQGVSQKPIKFVGIGEKMSEEEAAKLAKKMINAEFDFNDFL 398

Query: 307 --SAVITGCLDYG 317
             + ++ G    G
Sbjct: 399 KQAKMMKGMGSLG 411


>gi|223039520|ref|ZP_03609808.1| signal recognition particle protein [Campylobacter rectus RM3267]
 gi|222879316|gb|EEF14409.1| signal recognition particle protein [Campylobacter rectus RM3267]
          Length = 446

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 143/298 (47%), Gaps = 12/298 (4%)

Query: 26  LKLKEGITDIISSRR-LDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            ++ E     +S  R +DD        + L+  L+++D+   V ++++  +        +
Sbjct: 3   EQISESFRLAVSKIRFVDDEKALNNALDVLKKALLKADVHHKVTKELLALIEADLKQSGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             ++ L  +   + K+L              P  +L+ G+ G GKTT   KL+  +    
Sbjct: 63  GQKQFLDAIKSNLTKVLTAPGNQGFVFAPVAPTTVLMAGLQGSGKTTTTIKLANYLKLRK 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV++AA D  R AA++QL+   +    +    E  +D   +A +A  +A++   DVL++
Sbjct: 123 KKVLVAACDLQRLAAVEQLRQLCEANEIELFSIENETDPLNVAKQALAKAKSGLYDVLLV 182

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL  + +LM  I  +   L+      PH +  V DA +GQ+ ++    F+     +
Sbjct: 183 DTAGRLAIDEVLMKQIKDIKSALQ------PHEIFYVADAMSGQDGVKTASAFNDALKIS 236

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           G++++K D  ++GG  I I     IP+ F+G+GE + D+E F+ +   + I G  D  
Sbjct: 237 GVVLSKFDSDSKGGVAIGIAKQLNIPLRFVGIGEKVGDMESFIPERIVSRIMGEGDLA 294


>gi|256397103|ref|YP_003118667.1| signal recognition particle-docking protein FtsY [Catenulispora
           acidiphila DSM 44928]
 gi|256363329|gb|ACU76826.1| signal recognition particle-docking protein FtsY [Catenulispora
           acidiphila DSM 44928]
          Length = 395

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 118/323 (36%), Positives = 175/323 (54%), Gaps = 17/323 (5%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +   +V   +   + +L    + +   L +G+  ++S  +LD+   EE+ED LI +D+GV
Sbjct: 77  LPEIEVPEPTAGRLVRLRSRLSRSQGTLGQGLLKLLSRDKLDEATWEEIEDTLIAADLGV 136

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK------------PFNWDFS 108
             A ++V  L T      V   R + +   L+ + L+ L              P      
Sbjct: 137 GPATELVGRLRT---NTRVQGSRTVDEARALLREELIALIDPTLDRSLKVAKHPAADGAP 193

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            RP V +VVGVNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W  R  A 
Sbjct: 194 ERPAVAMVVGVNGTGKTTTTGKLARVLVADGYTVVLGAADTFRAAAADQLQTWGQRVGAY 253

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            V    G+D A++A+EA K+     VD ++IDTAGRLH  + LM  +GK+ RV ++    
Sbjct: 254 TVRGAEGADPASVAFEAVKEGTGMGVDTVLIDTAGRLHTKTGLMDELGKVKRVAEKQ--G 311

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
               VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  
Sbjct: 312 TVDEVLLVLDATTGQNGLVQARVFAEVVDVTGIVLTKLDGTAKGGIVVAVQKELGVPVKL 371

Query: 289 LGVGEGINDLEPFVAKDFSAVIT 311
           +G+GEG +DL PF  + F   + 
Sbjct: 372 VGLGEGPDDLAPFDPEAFVDALL 394


>gi|257387285|ref|YP_003177058.1| signal recognition particle-docking protein FtsY [Halomicrobium
           mukohataei DSM 12286]
 gi|257169592|gb|ACV47351.1| signal recognition particle-docking protein FtsY [Halomicrobium
           mukohataei DSM 12286]
          Length = 367

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 98/294 (33%), Positives = 152/294 (51%), Gaps = 14/294 (4%)

Query: 25  SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVS 80
             K+      II    L D   ++LE  L+ SD+ + VA +I+    E L+ +   +  S
Sbjct: 79  KAKILATGKSIIDEEDLQDH-LDDLELALLSSDVEMGVAGEILSGVEENLVGETRRRLSS 137

Query: 81  VQRVLYD-VSELIHKML--MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
              ++ D + E ++ ++             + +P VI+  GVNGVGKTT I KLS+++  
Sbjct: 138 TGNLVRDALRESLYDVISVGQFDFEQRIRAADKPVVIIFTGVNGVGKTTTIAKLSERLEG 197

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            GL  +LA GDT+R+ A +QL+  AD      +  E GSD AA+ Y+A + A+A   DV+
Sbjct: 198 QGLSTVLANGDTYRAGANEQLQKHADNLDRTLISHEQGSDPAAVIYDAVEYAEANDTDVV 257

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           + DTAGRLH +  LMA + K+ RV+       P   + V +A  GQ+A+ +   F   A 
Sbjct: 258 LGDTAGRLHTSDDLMAQLEKIDRVID------PDMTIFVDEAVAGQDAVNRAREFDEAAE 311

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             G ++TK D   +GG  I I      P+ FLG G+G +DLE F  ++    + 
Sbjct: 312 IDGAVLTKADADPQGGAAISIAHVTGKPILFLGTGQGYDDLERFDPEEVVDRLL 365


>gi|224476349|ref|YP_002633955.1| hypothetical protein Sca_0860 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420956|emb|CAL27770.1| truncated signal recognition particle homolog (fragment 1)
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 271

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 129/274 (47%), Gaps = 17/274 (6%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   S +L+  +  I    ++ +     +  E+   L+ +D+   V +  ++ +  +  
Sbjct: 2   AFEGLSDRLQATMQKIRDKGKVTEADIKAMMREVRLALLEADVNFKVVKSFIKTVSERAL 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V + + +++   +   N   +  P V+++VG+ G GKTT  GK
Sbjct: 62  GSDVMQSLTPGQQVIKIVQDELTQLMGGENSTINM-ANKPPTVVMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  M      K +L A D +R AAIDQL+    + +              +   A K A
Sbjct: 121 LALLMRKKYNKKPLLVAADIYRPAAIDQLETVGKQLNLPVYSEGDQVKPQQIVENALKYA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + + +D +IIDTAGRLH +  LM+ + ++  + K      P  ++ V+DA TGQ+A+   
Sbjct: 181 KEEHLDFVIIDTAGRLHIDEALMSELTEVKEISK------PDEIMLVVDAMTGQDAVNVA 234

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           + F      TG+ +TK+DG  RGG  + I     
Sbjct: 235 QSFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTD 268


>gi|325518808|gb|EGC98389.1| signal recognition particle-docking protein FtsY [Burkholderia sp.
           TJI49]
          Length = 213

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 100/215 (46%), Positives = 138/215 (64%), Gaps = 2/215 (0%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           PL K      +  P V+++ GVNG GKTT IGKL+K +      V+LAAGDTFR+AA +Q
Sbjct: 1   PLEKSLVLGRAQ-PLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQ 59

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L +W +R +   V  +   D AA+ ++A   A+A+K+DV++ DTAGRL     LM  + K
Sbjct: 60  LTVWGERNNVTVV-QQESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKK 118

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           + RV+ +    APH VL V+DA TGQN L QV+ F    G TGLI+TK+DGTA+GG L  
Sbjct: 119 VKRVISKAHDGAPHEVLLVIDANTGQNGLTQVKAFDDALGLTGLIVTKLDGTAKGGILAA 178

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           I     +PVYF+GVGE + DL+PF A++F+  + G
Sbjct: 179 IARQRPVPVYFIGVGEKVEDLQPFSAEEFADALLG 213


>gi|254461491|ref|ZP_05074907.1| signal recognition particle protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206678080|gb|EDZ42567.1| signal recognition particle protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 502

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRL-DDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L      +     L D+ V+  L +    L+ +D+ + VA+  V+ +  K   
Sbjct: 2   FENLSERLGGVFDRLTKQGALSDEDVKTALREVRVALLEADVSLPVARDFVKAVQEKATG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + V+      Q+V+  V + +  +L    +P      + P  IL+VG+ G GKTT  GKL
Sbjct: 62  QAVTKSITPGQQVVKIVHDELQHVLRGEGEPGELKIDNAPAPILMVGLQGGGKTTTTGKL 121

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K++S+  G +V++A+ D +R AA  QL I   +   D +    G  A  +A  A +QA 
Sbjct: 122 AKRLSEKNGKRVLMASLDIYRPAAQQQLAILGTQIGVDTLPIVAGESAVQIAKRAKQQAT 181

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DV ++DTAGRL  +  L      M  V    D   P   L V+D  TGQ A+   E
Sbjct: 182 LGGYDVYMLDTAGRLQIDETL------MKEVEDVRDAVNPRETLLVVDGLTGQVAVEVAE 235

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G +G+++T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  I
Sbjct: 236 EFDGKIGISGVVLTRMDGDGRGGAALSMRAVTGKPIKFVGMGEKMDALETFEPERVAGRI 295

Query: 311 TGCLD 315
            G  D
Sbjct: 296 LGMGD 300


>gi|325963725|ref|YP_004241631.1| signal recognition particle-docking protein FtsY [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469812|gb|ADX73497.1| signal recognition particle-docking protein FtsY [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 402

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 182/311 (58%), Gaps = 6/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +        + +L +    ++  + +G+  ++SS R+D+ V +E+E+ L+ +D+G     
Sbjct: 93  ETPLPVAGRLVRLRERLVRSNNIMGKGLLALLSSDRIDEDVWDEVEETLLLADLGTEPTM 152

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMP-LSKPFNWDF-SHRPHVILVVGVNG 121
           ++V+ L  +           + ++  E + K++ P + +  N    + +P V++VVGVNG
Sbjct: 153 QLVDALRERVKVLGTRSPEQVKELLREELIKLVDPTMDRTLNVQRHADKPAVMMVVGVNG 212

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAA 180
           VGKTT +GKL++ +      V+L A DTFR+AA +QL  W  R     V S+I   D A+
Sbjct: 213 VGKTTTVGKLARVLVAEDKDVLLGAADTFRAAAAEQLATWGQRVGVPTVKSDIDGADPAS 272

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +AYEA K    ++VDV++IDTAGRL N   LM  +GK+ RV+++L       VL VLDAT
Sbjct: 273 VAYEAVKAGIDQEVDVVMIDTAGRLQNKVGLMDELGKVKRVIEKLAE--VDEVLLVLDAT 330

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN L Q  +F  V   TG+++TK+DGTA+GG ++ I  T  +PV  +G+GEG +DL P
Sbjct: 331 TGQNGLNQARVFSEVVNITGIVLTKLDGTAKGGIVVAIQKTLGVPVKLIGLGEGADDLAP 390

Query: 301 FVAKDFSAVIT 311
           F A+ F   + 
Sbjct: 391 FEAEGFVDALL 401


>gi|171920824|ref|ZP_02932001.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|195867735|ref|ZP_03079736.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|171903592|gb|EDT49881.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 13 str. ATCC 33698]
 gi|195660590|gb|EDX53846.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
          Length = 351

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 168/309 (54%), Gaps = 12/309 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I K  +G   +S  L   I ++ +    +++   E LE++LI  D+G     KI+E +  
Sbjct: 41  INKFNEGLRKSSSALTNAINELATKYIDINEEWYEHLEEVLIGYDVGYVATNKIIESIRN 100

Query: 73  KRYAKDVSVQRVLYDVSELIHKML------MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +   + V+   ++  +  +I K+         +S   N   +    V++V     VGKTT
Sbjct: 101 EMIYQKVNDPELIKSI--IIDKIFIYYIQDTEISTEINLKQNQTNVVLVVGVNG-VGKTT 157

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEA 185
            I K++KK  +   KV+L AGDTFR+ A++QLK+WA R + D  +  + G D A++ Y  
Sbjct: 158 SIAKITKKFINENKKVLLVAGDTFRAGAVEQLKVWAQRLNVDIELPIKEGQDPASVIYAG 217

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K+   +K D++I DT+GRL N   LM  + K+  V+ + D HAPH  L VLDAT GQ+ 
Sbjct: 218 VKKGYEQKYDLVICDTSGRLQNKINLMNELKKIHDVIHKFDEHAPHETLLVLDATQGQSG 277

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F+ V   +G+I+TKMD T+RGG ++ I     IPV  +G+GE ++DL  F  + 
Sbjct: 278 INQAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLDDLSVFDLEM 337

Query: 306 FSAVI-TGC 313
           +   I  G 
Sbjct: 338 YVDSIVLGM 346


>gi|255321342|ref|ZP_05362502.1| signal recognition particle protein [Campylobacter showae RM3277]
 gi|255301495|gb|EET80752.1| signal recognition particle protein [Campylobacter showae RM3277]
          Length = 446

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 143/298 (47%), Gaps = 12/298 (4%)

Query: 26  LKLKEGITDIISSRR-LDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            ++ E     +S  R +DD        + L+  L+++D+   V ++++  +        +
Sbjct: 3   EQISESFRLAVSKIRFVDDEKALNNALDVLKKALLKADVHHKVTKELLALIEADLKQSGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             ++ L  +   + K+L              P ++L+ G+ G GKTT   KL+  +    
Sbjct: 63  GQKQFLDAIKSNLTKVLTTPGNQGFVFAPVAPTIVLMAGLQGSGKTTTTIKLANYLKLRK 122

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV++AA D  R AA++QL+   +    +    E  +D   +A +A  +A++   DVL++
Sbjct: 123 KKVLVAACDLQRLAAVEQLRQLCEANEIELFSIENETDPLNVAKQALAKAKSGLYDVLLV 182

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRL  +  LM  I  +   L+      PH +  V DA +GQ+ ++    F+     +
Sbjct: 183 DTAGRLAIDEALMKQIKDINSALE------PHEIFYVADAMSGQDGVKTASTFNDALKIS 236

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           G++++K D  ++GG  I I     IP+ F+G+GE + D+E F+ +   + I G  D  
Sbjct: 237 GVVLSKFDSDSKGGVAIGIAKQLNIPLRFVGIGEKVGDMESFIPERIVSRIMGEGDLA 294


>gi|150403620|ref|YP_001330914.1| signal recognition particle-docking protein FtsY [Methanococcus
           maripaludis C7]
 gi|150034650|gb|ABR66763.1| signal recognition particle-docking protein FtsY [Methanococcus
           maripaludis C7]
          Length = 383

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 96/323 (29%), Positives = 159/323 (49%), Gaps = 30/323 (9%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIR----SDIGVAV 62
            E + ++ KLT         + + I  ++     L +   E++ + +      +D+   V
Sbjct: 67  KEKVGFLDKLT---------ITKSIKKVLGKDVVLTESDIEDILEEMEMELFEADVAFEV 117

Query: 63  AQKIVEELLT-----KRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-----NWDFSHRPH 112
            +KI+E L       K  AKD   +  +  + + I ++L                  +P 
Sbjct: 118 VEKIIESLKNQLVGLKISAKDNPEEITINALKKSIKEILSQEQSDVFKLIDEKKAKGKPA 177

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V+L VG+NG GKTT I KL   + + G  V++AAGDTFR+ AI+QL+     T+   +  
Sbjct: 178 VLLFVGINGTGKTTSISKLGYILKERGYSVVMAAGDTFRAGAIEQLEEHGKNTAIKVIKH 237

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           + G+D+AA+ Y+A   A+AK +DV++ DTAGR   N  LM  I K++RV K      P  
Sbjct: 238 QKGADSAAVIYDAISHAKAKGIDVVLADTAGRQTTNINLMDEIKKVVRVTK------PDL 291

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           ++ V D+  G +A+ Q E F+      G I+TK D  A+GG  + I  +   P+ F+GVG
Sbjct: 292 IIFVGDSLAGNDAISQAEEFNNAIDIDGAILTKTDADAKGGAALSIAYSIGKPILFMGVG 351

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           +  +D++ F  +     +    D
Sbjct: 352 QRYSDIQEFDVEWMVKKLFSEED 374


>gi|282861362|ref|ZP_06270427.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           ACTE]
 gi|282564020|gb|EFB69557.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           ACTE]
          Length = 401

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 177/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 92  EVPEPTAGRLVRLRARLARSQNSLGKGLLALLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 151

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNG 121
           ++VE L  +           L   + E +  +L P    +      +  P V++VVGVNG
Sbjct: 152 ELVERLRERVRVLGTRTPEELRALLREELVALLGPDFDREVKTEGGAETPGVVMVVGVNG 211

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 212 TGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 271

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 272 AFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGP--LDEVLLVLDATT 329

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 330 GQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDDLAPF 389

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 390 EPGAFVDALIG 400


>gi|185178762|ref|ZP_02554787.2| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188518543|ref|ZP_02556795.2| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|209554046|ref|YP_002284564.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|225551231|ref|ZP_03772177.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
 gi|184209374|gb|EDU06417.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 5 str. ATCC 27817]
 gi|188997922|gb|EDU67019.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|209541547|gb|ACI59776.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|225379046|gb|EEH01411.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 8 str. ATCC 27618]
          Length = 351

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 168/309 (54%), Gaps = 12/309 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I K  +G   +S  L   I ++ +    +++   E LE++LI  D+G     KI+E +  
Sbjct: 41  INKFNEGLRKSSSALTNAINELATKYIDINEEWYEHLEEVLIGYDVGYVATNKIIESIRN 100

Query: 73  KRYAKDVSVQRVLYDVSELIHKML------MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +   + V+   ++  +  +I K+         ++   N   +    V++V     VGKTT
Sbjct: 101 EMIYQKVNDPELIKSI--IIDKIFIYYIQDTEINTEINLKQNQTNVVLVVGVNG-VGKTT 157

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEA 185
            I K++KK  +   KV+L AGDTFR+ A++QLK+WA R + D  +  + G D A++ Y  
Sbjct: 158 SIAKITKKFINENKKVLLVAGDTFRAGAVEQLKVWAQRLNVDIELPIKEGQDPASVIYAG 217

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K+   +K D++I DT+GRL N   LM  + K+  V+ + D HAPH  L VLDAT GQ+ 
Sbjct: 218 VKKGYEQKYDLVICDTSGRLQNKINLMNELKKIHDVIHKFDEHAPHETLLVLDATQGQSG 277

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F+ V   +G+I+TKMD T+RGG ++ I     IPV  +G+GE ++DL  F  + 
Sbjct: 278 INQAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLDDLSVFDLEM 337

Query: 306 FSAVI-TGC 313
           +   I  G 
Sbjct: 338 YVDSIVLGM 346


>gi|45359114|ref|NP_988671.1| signal recognition particle protein Srp54 [Methanococcus
           maripaludis S2]
 gi|74579561|sp|Q6LX03|SRP54_METMP RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|45047989|emb|CAF31107.1| signal recognition particle protein SRP54 [Methanococcus
           maripaludis S2]
          Length = 450

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 149/301 (49%), Gaps = 20/301 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY- 75
                  L + +  +       ++L   V ++++  LI+SD+ V +   + +E+  K   
Sbjct: 2   LDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAID 61

Query: 76  ---AKDVSVQRV-LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
               K +S +   +  V + + K+L   ++    D S +  VIL++G+ G GKTT   KL
Sbjct: 62  EAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKK-SVILLIGIQGSGKTTSAAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQAQ 190
           ++ +   GL+  L A D +R AA  QLK  +++ +      E  +     +  E  ++ +
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKLK 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
             KVDV+IIDTAGR      L+A + +M       D   P+ ++ V+D T GQ A  Q +
Sbjct: 181 --KVDVIIIDTAGRHKEEEGLLAEMKEMK------DLTNPNEIILVIDGTLGQQAKNQAK 232

Query: 251 MFHAVAGTTGLIM-TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
            F       G I+ TK+DG+A+GGG +  V     P+ F+G GEG+++LE F  K F + 
Sbjct: 233 AFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISR 292

Query: 310 I 310
           I
Sbjct: 293 I 293


>gi|300780915|ref|ZP_07090769.1| signal recognition particle GTPase [Corynebacterium genitalium ATCC
           33030]
 gi|300532622|gb|EFK53683.1| signal recognition particle GTPase [Corynebacterium genitalium ATCC
           33030]
          Length = 559

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 114/310 (36%), Positives = 176/310 (56%), Gaps = 11/310 (3%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +   I +L    + +   + +G+  I+++  LD+   EE+ED LI +D+G  +  K+ E
Sbjct: 252 PAAGRIGRLRGRLSRSQNAIGQGLLGILTAGDLDEDAWEEIEDTLIMADLGAELTMKVTE 311

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGV 122
            L  K   + V+ +    +   ++ + L+   +P             +P VILVVGVNG 
Sbjct: 312 NLRAKIAERGVASEE---EARAMLRETLIEAGRPELDRSIKAMPNEGKPAVILVVGVNGT 368

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GKL++ +   G +V+L A DTFR+AA DQL+ W  R  A  V    G+D AA+A
Sbjct: 369 GKTTTTGKLARVLISMGHRVVLGAADTFRAAAADQLETWGRRVGASTVRGAEGADPAAVA 428

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A K    ++ DV+I+DTAGRLH ++ LM  +GK+ RV+++        VL VLDAT G
Sbjct: 429 FDAVKTGVEEQADVVIVDTAGRLHTSTGLMDQLGKVKRVVEKK--SQVDEVLLVLDATVG 486

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF 
Sbjct: 487 QNGLTQARVFKDVVEITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFE 546

Query: 303 AKDFSAVITG 312
            + F   + G
Sbjct: 547 VEGFVDALLG 556


>gi|229816785|ref|ZP_04447067.1| hypothetical protein BIFANG_02032 [Bifidobacterium angulatum DSM
           20098]
 gi|229785801|gb|EEP21915.1| hypothetical protein BIFANG_02032 [Bifidobacterium angulatum DSM
           20098]
          Length = 420

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 181/312 (58%), Gaps = 7/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S +++L    + +     + + +I++  +L +   E++ED L+ +D+G   ++
Sbjct: 110 ETPEAAGSRMQRLKARLSKSGNPFGKALFNILAKDQLSESDWEDVEDTLLLADVGAEASE 169

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWD--FSHRPHVILVVGVN 120
           ++VEEL         S    +      +L+  +   + +  N D   ++RP VI++VGVN
Sbjct: 170 QLVEELRNDARIAGQSDPAEVRAALRDKLLDVVGRDMDRRLNADKEGANRPSVIIMVGVN 229

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAA 179
           G GKTT  GKL++     G KVML A DTFR+AA DQL+ W  +     V S+  G+D A
Sbjct: 230 GTGKTTTTGKLARLFVADGKKVMLGAADTFRAAAADQLETWGAKVGVPVVRSDKDGADPA 289

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A+EA  +A+ +  DVLIIDTAGRL N + LM  +GK+ RV ++  P     VL VLDA
Sbjct: 290 SVAFEASAKAKEENADVLIIDTAGRLQNKANLMDELGKIRRVTEKNLP--VDEVLLVLDA 347

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN + Q ++F    G TG++++K+DG+A+GG ++ +     +PV  +G+GEG +DL 
Sbjct: 348 TTGQNGMAQAKVFAEAIGITGVVLSKLDGSAKGGIVVSVQKELGVPVKLVGLGEGPDDLA 407

Query: 300 PFVAKDFSAVIT 311
           PF  + F   I 
Sbjct: 408 PFDPEGFVDGIL 419


>gi|308162746|gb|EFO65124.1| SRP GTPase [Giardia lamblia P15]
          Length = 530

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 133/303 (43%), Gaps = 24/303 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK------ 73
            FA T L   E +  ++          +E   +L  +D+     + + + + TK      
Sbjct: 16  KFAKTRLTTNEAVNALV----------DEFIGVLEAADVPARTLEPMRKSMTTKILSDPA 65

Query: 74  -RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
               +  + Q V   V + +  ML P   PF     +R +VI+ VG+ G GKTT   K  
Sbjct: 66  IMEGRANTHQVVQRIVVQELVSMLSPERPPFR-PVRNRANVIMFVGLQGAGKTTTCVKFG 124

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G +V L   DTFR+ A DQLK         F  S    D   +A +  K     
Sbjct: 125 AYYKRKGWRVGLVCCDTFRTGAFDQLKQNCTAVRLPFYGSYSEKDPVQIAQDGVKHFIGL 184

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             +++I+DT+GR      L   +  +   ++      PH  + VLD++ GQ A  Q + F
Sbjct: 185 NFELIILDTSGRHRQEEALFTEMKLIDSAVQ------PHDHVFVLDSSIGQAAYEQADAF 238

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                   +I+TK+DG +RGGG +  V   K P+ FLG GE I DLE F +  F +V+ G
Sbjct: 239 SNAVEIGSVILTKLDGHSRGGGALAAVSATKAPIVFLGTGEKIEDLEFFDSSRFVSVMLG 298

Query: 313 CLD 315
             D
Sbjct: 299 YGD 301


>gi|66819967|ref|XP_643640.1| signal recognition particle 54 kDa subunit [Dictyostelium
           discoideum AX4]
 gi|75009097|sp|Q75K18|SRP54_DICDI RecName: Full=Signal recognition particle 54 kDa protein;
           Short=SRP54
 gi|60471522|gb|EAL69478.1| signal recognition particle 54 kDa subunit [Dictyostelium
           discoideum AX4]
          Length = 542

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 143/305 (46%), Gaps = 16/305 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY- 75
            A    +L   +  +  +  +++     + +E+ + L +SD+ +++  ++ + +  K   
Sbjct: 3   LADLGNQLSSALRSLNETTIVNEDTINQLLKEVGNALSKSDVSMSLIIQMRKNIKDKIKL 62

Query: 76  ---AKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ ++++  V  + + ++L P   P       + ++++ VG+ G GKTT + KL
Sbjct: 63  DQMAAGLNKRKIIKQVVFDELIRLLDPGV-PLWKPTKGKSNIVMFVGLQGAGKTTSVTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G    +   DTFR+ A DQ++  A +    +  SE   D   +A       + 
Sbjct: 122 AYFYKKKGFSTAIVCADTFRAGAFDQVRHNAAKAKIHYYGSETEKDPVVVARTGVDIFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +++I+DT+GR   +S L   + ++   +K      P + + V+D++ GQ A  Q   
Sbjct: 182 DGTEIIIVDTSGRHKQDSELFEEMKQIETAVK------PDNCIFVMDSSIGQAAYEQATA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F +      +I+TKMDG + GGG I  V     P+ F+G GE + DLE F    F + + 
Sbjct: 236 FRSSVKVGSIIITKMDGNSMGGGAISAVAATNTPIIFIGTGEHLTDLELFDPSTFVSKLL 295

Query: 312 GCLDY 316
           G  D 
Sbjct: 296 GYGDM 300


>gi|85057344|ref|YP_456260.1| signal recognition particle, docking protein FtsY [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|84789449|gb|ABC65181.1| signal recognition particle, docking protein FtsY [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 356

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 97/326 (29%), Positives = 157/326 (48%), Gaps = 34/326 (10%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            K   G   T     +  T +  S  ++  + + LE LLI++D G      +++ +  + 
Sbjct: 16  DKYQLGLKKTKASFLDFQTLLKQSNNIEQSLLQALESLLIQADFGTKTIFFLMQAIKDEI 75

Query: 75  YAKDVSVQRVLYDVS--------------ELIHKMLMPLSKPFNWDFSHR---------- 110
               +   + L  V               + I   L    +        +          
Sbjct: 76  NQFQIKNPQKLPSVVFSKMFDLYQNMKDMKNIKDTLESSQEQEQEKKQAKQNQGPNPTNP 135

Query: 111 ----------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                     P + L  GVNGVGKTT IGK+++ +   G KV+L A DTFR+ A+ QL+I
Sbjct: 136 KDTFTSQNNFPQMYLFTGVNGVGKTTTIGKMAEALKQEGKKVLLIAADTFRAGAVAQLQI 195

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           WA R   +  C  + +  A++ +E  + A+++  D+++ DTAGRL N + LM  + K+ R
Sbjct: 196 WAKRVGVEVFCKPLPAHPASVIFEGIELAKSQNYDIILCDTAGRLQNKTNLMQELAKINR 255

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V+ +  P +      VLDATTGQNAL QV++F+     +G I+TK+DGT++GG +  I  
Sbjct: 256 VIYKHLPASNLQTFLVLDATTGQNALNQVDLFNQATPLSGAILTKLDGTSKGGIVFAIKY 315

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDF 306
            + +P  ++GVGE   DL  F  K +
Sbjct: 316 LYNLPTKYIGVGEKAQDLITFDVKKY 341


>gi|260220058|emb|CBA27216.1| Signal recognition particle protein [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 395

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 8/245 (3%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +        Q ++  V+  +   +       N   +  P VIL+ G+ G GKTT  GKL
Sbjct: 3   QEVLGSLQPGQVLVSIVNRELAATMGEGVSDINL-AAQPPAVILMSGLQGAGKTTTTGKL 61

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV+  +GD +R AAI+QLK    +  A++  S    +   +   A   A+
Sbjct: 62  AKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAGAEWFPSTPDQNPVDIGRAALDYAK 121

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               DVL++DTAGRL  +  LM+ I  +   L       P   L V+DA  GQ+A+   +
Sbjct: 122 KHFFDVLLVDTAGRLAIDEALMSEIKNLHAALN------PVETLFVVDAMQGQDAVNTAK 175

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F      TG+I+TK DG +RGG  + +      P+ F G  E ++ LE F A+  +  I
Sbjct: 176 AFKEALPLTGIILTKTDGDSRGGAALSVRQITGAPIKFAGTSEKLDGLEVFDAERHAGRI 235

Query: 311 TGCLD 315
            G  D
Sbjct: 236 LGMGD 240


>gi|242038763|ref|XP_002466776.1| hypothetical protein SORBIDRAFT_01g014030 [Sorghum bicolor]
 gi|241920630|gb|EER93774.1| hypothetical protein SORBIDRAFT_01g014030 [Sorghum bicolor]
          Length = 476

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 143/301 (47%), Gaps = 18/301 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLT---- 72
            +  S  LK  ++ + ++  +D  V +    E+   L+++D+     +++   + +    
Sbjct: 3   LSQLSGSLKGALSRMCNATLVDQKVLDDCLNEISRALLQADVRFETVRRVQATIKSTVNL 62

Query: 73  KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGK 130
           +  A   + +RV+   V   + + L P    F      +P  V++ VG+ G GKTT   K
Sbjct: 63  QALADGTNKRRVIHRAVVAELRRTLDPGKPSFAPTKGRKPASVVMFVGLQGSGKTTTCVK 122

Query: 131 LS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            +       GL   L   DTFR+ A DQLK  A +    F  S   SD   +A E   + 
Sbjct: 123 YADYHRRHKGLSPALVCADTFRAGAFDQLKQNATKAGIPFYGSHTESDPVKVAVEGVDRF 182

Query: 190 QAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           + +   D++++DT+GR    + L+  + ++       D   P  V+ V+DA+ GQ A +Q
Sbjct: 183 RDEDACDLIVVDTSGRHRQEAALLEEMRQV------ADATRPDLVVFVMDASIGQAAFQQ 236

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
            + F        +I+TKMDG A+GGG +  V   K PV F+G GE I DLE F AK F +
Sbjct: 237 AQAFRQSTPVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHIPDLEAFDAKSFVS 296

Query: 309 V 309
            
Sbjct: 297 R 297


>gi|269795674|ref|YP_003315129.1| signal recognition particle-docking protein FtsY [Sanguibacter
           keddieii DSM 10542]
 gi|269097859|gb|ACZ22295.1| signal recognition particle-docking protein FtsY [Sanguibacter
           keddieii DSM 10542]
          Length = 405

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 111/315 (35%), Positives = 179/315 (56%), Gaps = 10/315 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            V       + +L +  A +   L   +  ++S   L +   +ELE+ L+ +D+G   A 
Sbjct: 91  DVPEPPAGRLVRLRERLARSGSPLGTRLLAVLSRDHLTEDDWDELEETLLLADMGAGPAG 150

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSK------PFNWDFSHRPHVILVV 117
           +++++L T+   + V     +   +   +  ++ P             D +  P V+LVV
Sbjct: 151 ELIDDLRTQVRVQGVKDAAGVRAMLRGALVTLVDPTLDRSLSTTATTTDGTKVPAVVLVV 210

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGS 176
           GVNG GKTT +GKL++ +   G +V+L A DTFR+AA DQL  W  R   + + S + G+
Sbjct: 211 GVNGTGKTTTVGKLTRVLVADGNQVVLGAADTFRAAAADQLTTWGARVGVETIRSFKDGA 270

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+A++A +  + + VDV+++DTAGRL N + LM  +GK+ RV+ +  P     VL V
Sbjct: 271 DPAAVAFDAVRAGKERGVDVVLVDTAGRLQNKAGLMDELGKISRVITKEAP--LSEVLLV 328

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN L Q  +F  VAG TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +
Sbjct: 329 LDATTGQNGLNQARVFAEVAGVTGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPD 388

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF  ++F   + 
Sbjct: 389 DLAPFDPEEFVDGLL 403


>gi|188024295|ref|ZP_02570025.2| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
 gi|188018969|gb|EDU57009.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 7 str. ATCC 27819]
          Length = 351

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 103/309 (33%), Positives = 168/309 (54%), Gaps = 12/309 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I K  +G   +S  L   I ++ +    +++   E LE++LI  D+G     KI+E +  
Sbjct: 41  INKFNEGLRKSSSALTNAINELATKYIDINEEWYEHLEEVLIGYDVGYVATNKIIESIRN 100

Query: 73  KRYAKDVSVQRVLYDVSELIHKML------MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +   + V+   ++  +  +I K+         ++   N   +    V++V     VGKTT
Sbjct: 101 EMIYQKVNDPELIKSI--IIDKIFIYYIQDTEINTEINLKQNQTNVVLVVGVNG-VGKTT 157

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEA 185
            I K++KK  +   KV+L AGDTFR+ A++QLK+WA R + D  +  + G D A++ Y  
Sbjct: 158 SIAKITKKFINENKKVLLVAGDTFRAGAVEQLKVWAQRLNVDIELPIKEGQDPASVIYAG 217

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K+   +K D++I DT+GRL N   LM  + K+  ++ + D HAPH  L VLDAT GQ+ 
Sbjct: 218 VKKGYEQKYDLVICDTSGRLQNKINLMNELKKIHDIIHKFDEHAPHETLLVLDATQGQSG 277

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F+ V   +G+I+TKMD T+RGG ++ I     IPV  +G+GE ++DL  F  + 
Sbjct: 278 INQAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLDDLSVFDLEM 337

Query: 306 FSAVI-TGC 313
           +   I  G 
Sbjct: 338 YVDSIVLGM 346


>gi|242033617|ref|XP_002464203.1| hypothetical protein SORBIDRAFT_01g014055 [Sorghum bicolor]
 gi|241918057|gb|EER91201.1| hypothetical protein SORBIDRAFT_01g014055 [Sorghum bicolor]
          Length = 471

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 88/298 (29%), Positives = 143/298 (47%), Gaps = 18/298 (6%)

Query: 24  TSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLT----KRY 75
            S  LK  ++ + ++  +D  V +    E+   L+++D+     +++   + +    +  
Sbjct: 1   LSGSLKGALSRMCNATLVDQKVLDDCLNEISRALLQADVRFETVRRVQASIKSTVNLQAL 60

Query: 76  AKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLS- 132
           A   + +RV+   V   + + L P    F      +P  V++ VG+ G GKTT   K + 
Sbjct: 61  ADGTNKRRVIHRAVVAELRRTLDPGKPSFAPTKGRKPASVVMFVGLQGSGKTTTCVKYAD 120

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 GL   L   DTFR+ A DQLK  A +    F  S   SD   +A E   + + +
Sbjct: 121 YHRRHKGLSPALVCADTFRAGAFDQLKQNATKAGIPFYGSHTESDPVKVAVEGVDRFRNE 180

Query: 193 K-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D++++DT+GR    + L+  + ++       D   P  V+ V+DA+ GQ A +Q + 
Sbjct: 181 DACDLIVVDTSGRHRQEAALLEEMRQV------ADATRPDLVVFVMDASIGQAAFQQAQA 234

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           F   A    +I+TKMDG A+GGG +  V   K PV F+G GE I DLE F AK F + 
Sbjct: 235 FRQSAPVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHIPDLEAFDAKSFVSR 292


>gi|14719791|pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
           A. Ambivalens T112a Mutant
          Length = 297

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 136/297 (45%), Gaps = 14/297 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
             +    +++ +T   S  +  +   +EL+  LI +D+ V +   +  ++  +   +   
Sbjct: 4   LDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPP 63

Query: 81  V-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                 +  +  V + +  +     +P        P+VI++VGV G GK T  GKL+   
Sbjct: 64  TYIERREWFIKIVYDELSNLFGGDKEPKVIP-DKIPYVIMLVGVQGTGKATTAGKLAYFY 122

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G KV L   D +R AA++QL+    +            D   +A    ++  ++K++
Sbjct: 123 KKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKME 182

Query: 196 VLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           ++I+DTAGR      + L+  +  +   +K      P  V  V+DA+ GQ A      F+
Sbjct: 183 IIIVDTAGRHGYGEEAALLEEMKNIYEAIK------PDEVTLVIDASIGQKAYDLASKFN 236

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
             +    +I+TKMDGTA+GGG +  V      + F+G GE I++LE F  + F A +
Sbjct: 237 QASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARL 293


>gi|327291942|ref|XP_003230679.1| PREDICTED: signal recognition particle 54 kDa protein-like, partial
           [Anolis carolinensis]
          Length = 425

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +I +++ P  K +      + ++I+ VG+ G GKTT   KL+      G K  L   DT+
Sbjct: 3   IILQLVDPGVKAWT-PTKGKQNIIMFVGLQGSGKTTSCSKLAYYYQRKGWKTCLICADTY 61

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+ A DQLK  A +    F  S    D   +A E  ++ + +  +++I+DT+GR      
Sbjct: 62  RAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDS 121

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           L   + ++   ++      P +++ V+DA+ GQ    Q + F        +I+TK+DG A
Sbjct: 122 LFEEMLQVANAIQ------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHA 175

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +GGG +  V   K P+ F+G GE I+D EPF  + F + + G  D
Sbjct: 176 KGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 220


>gi|291532927|emb|CBL06040.1| signal recognition particle-docking protein FtsY [Megamonas
           hypermegale ART12/1]
          Length = 251

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 120/246 (48%), Positives = 161/246 (65%), Gaps = 2/246 (0%)

Query: 67  VEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++      K ++    L   + + I +ML   S   N   S  P VILV+GVNGVGKT
Sbjct: 1   MDDVRAGIKKKQINSPEDLKPFLIKRITEMLNEGSDETNIAKSG-PTVILVIGVNGVGKT 59

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL +   + G  VM AA DTFR+AAIDQL+IW  R +   +  E GSD AA+ ++A
Sbjct: 60  TTIGKLGRYYKEQGKNVMFAAADTFRAAAIDQLEIWGQRVNVPVIKHEEGSDPAAVVFDA 119

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K A A+KVD+LIIDTAGRLHN + LM  + K+ RV+KR    APH  L VLDATTGQNA
Sbjct: 120 VKAAIARKVDILIIDTAGRLHNKANLMTELNKIQRVIKREIAEAPHETLLVLDATTGQNA 179

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q E+F   A  +GL++TK+DGTA+GG +I +     +PV ++GVGEG++DL PFVA D
Sbjct: 180 ISQAELFTKSAPISGLVLTKLDGTAKGGVVIGLKSELSMPVKWIGVGEGMDDLRPFVAND 239

Query: 306 FSAVIT 311
           F+A + 
Sbjct: 240 FAAALF 245


>gi|217032545|ref|ZP_03438035.1| hypothetical protein HPB128_172g8 [Helicobacter pylori B128]
 gi|216945750|gb|EEC24374.1| hypothetical protein HPB128_172g8 [Helicobacter pylori B128]
          Length = 291

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 131/253 (51%), Gaps = 7/253 (2%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A+++++++ ++  A  +  Q+ L  + + + ++L              P V+L+ G+ G 
Sbjct: 2   ARELLKKVESQTKASGIGKQQFLDALEKSLLEILSTKGSSGFTFAQTPPTVVLMAGLQGS 61

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT   KL+  +     KV+L A D  R AA++QLK+  ++   +    E       +A
Sbjct: 62  GKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVFY-EENKSVKEIA 120

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             A K+A+  + DVLI+D+AGRL  +  LM  + ++  +L       PH VL V DA +G
Sbjct: 121 NNALKRAKEAQFDVLIVDSAGRLAIDKELMQELKEVKEILN------PHEVLYVADALSG 174

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           Q+ ++    F+   G +G++++K D  ++GG  + I     +P+ F+G GE I DL+ FV
Sbjct: 175 QDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFV 234

Query: 303 AKDFSAVITGCLD 315
            +     + G  D
Sbjct: 235 PERIVGRLMGAGD 247


>gi|225165896|ref|ZP_03727665.1| signal recognition particle-docking protein FtsY [Opitutaceae
           bacterium TAV2]
 gi|224799858|gb|EEG18318.1| signal recognition particle-docking protein FtsY [Opitutaceae
           bacterium TAV2]
          Length = 253

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 104/247 (42%), Positives = 151/247 (61%), Gaps = 4/247 (1%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPHVILVVGVNGVGKTT 126
              R  KD+  Q      + ++ + L+              +  P VI+++GVNG GKTT
Sbjct: 6   TAHRKDKDLRGQDAARIGAAVLTRALVGSEIALAPAPAALAAKSPTVIVMIGVNGSGKTT 65

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              KL   +   G  V+LAA DTFR+AA++QLK WA R     V S  G+DAAA+AY+A+
Sbjct: 66  TSAKLGWLLKQDGKTVLLAACDTFRAAAVEQLKSWATRLDLPIVASHTGADAAAVAYDAW 125

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+A+  D LI+DTAGRLH  S LM  + K+ RVL++ DP APH    V+D + G N++
Sbjct: 126 QAAKARGTDYLIVDTAGRLHTKSNLMEELAKIRRVLQKNDPAAPHHAWLVVDGSLGTNSI 185

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q ++FH   G TGL++TK+DGT+RGG ++ I    K+P+YFLG+GE   DL+PF A+++
Sbjct: 186 EQAKVFHKAFGLTGLVVTKLDGTSRGGAIVGIWRELKLPIYFLGLGEQPEDLQPFNAENY 245

Query: 307 SAVITGC 313
           S  + G 
Sbjct: 246 SRAVFGL 252


>gi|12044898|ref|NP_072708.1| signal recognition particle protein [Mycoplasma genitalium G37]
 gi|1351112|sp|P47294|SRP54_MYCGE RecName: Full=Signal recognition particle protein; AltName:
           Full=Fifty-four homolog
 gi|1045721|gb|AAC71264.1| signal recognition particle protein [Mycoplasma genitalium G37]
 gi|166078612|gb|ABY79230.1| signal recognition particle protein [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 446

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 133/283 (46%), Gaps = 11/283 (3%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIH 93
           I+ + + + V +E+   L+ +D+ + V +  ++ +  K   + +   + L    +  +  
Sbjct: 23  ITEKDV-ELVLKEIRIALLDADVNLLVVKNFIKAIRDKTVGQTIEPGQDLQKSLLKTIKT 81

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRS 152
           +++  LS+P       RP  I++VG+ G GKTT  GKL+  +      K ML   D +R 
Sbjct: 82  ELINILSQPNQELNEKRPLKIMMVGLQGSGKTTTCGKLAYWLEKKYKQKTMLVGLDIYRP 141

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AAI+QL+  + +T++ F         A     A    +  K   +I DTAGRL  N  LM
Sbjct: 142 AAIEQLETLSQQTNSVFFAQGT-QPVAKTTKAALSAFKTAKCQTIICDTAGRLQTNETLM 200

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             +  +   L       P  ++ V+D  +GQ  +   + FH     TG I++K+D  AR 
Sbjct: 201 DELVSVKNELN------PDEIIMVVDGLSGQEIINVAQTFHKRLKLTGFIISKLDSDARA 254

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G  + +    ++P+  +GV E ++ LE F  +  +  I G  D
Sbjct: 255 GAALSLASLLQVPIKLIGVSEKLDGLEQFHPERIANRILGLGD 297


>gi|295133103|ref|YP_003583779.1| signal recognition particle-docking protein FtsY [Zunongwangia
           profunda SM-A87]
 gi|294981118|gb|ADF51583.1| signal recognition particle-docking protein FtsY [Zunongwangia
           profunda SM-A87]
          Length = 316

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 112/258 (43%), Positives = 160/258 (62%), Gaps = 4/258 (1%)

Query: 55  RSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHR 110
            SD+GVA   KI+  +  +    K +    +   + E I  +L   +     DF   + +
Sbjct: 55  SSDVGVATTIKIINRIEDRVAKDKYLGTDELNKILREEIAGLLSETNSGNATDFTVPNKK 114

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+V++VVGVNGVGKTT IGKL+ +    GLKV+L A DTFR+AAIDQL++WA+RT    +
Sbjct: 115 PYVMMVVGVNGVGKTTTIGKLANQFKSRGLKVVLGAADTFRAAAIDQLQVWAERTDVPII 174

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
              +GSD A++A++  + A     DV++IDTAGRLHN   LM  + K+ RV++++ P AP
Sbjct: 175 KQSMGSDPASVAFDTVQNAVKMDADVVLIDTAGRLHNKVNLMKELSKVKRVMQKVIPDAP 234

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H VL VLD +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++G
Sbjct: 235 HEVLLVLDGSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIG 294

Query: 291 VGEGINDLEPFVAKDFSA 308
           VGE + DL+ F   +F  
Sbjct: 295 VGERVEDLQVFNKFEFVD 312


>gi|188524093|ref|ZP_02557344.2| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198273332|ref|ZP_03205868.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|225550674|ref|ZP_03771623.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
 gi|195659882|gb|EDX53262.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|198249852|gb|EDY74632.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|225379828|gb|EEH02190.1| signal recognition particle-docking protein FtsY [Ureaplasma
           urealyticum serovar 2 str. ATCC 27814]
          Length = 351

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 168/309 (54%), Gaps = 12/309 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I K  +G   +S  L   I ++ +    +++   E LE++LI  D+G     KI+E +  
Sbjct: 41  INKFNEGLRKSSSALTNAINELATKYIDINEEWYEHLEEVLIGYDVGYVATNKIIESIRN 100

Query: 73  KRYAKDVSVQRVLYDVSELIHKML------MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +   + V+   ++  +  +I K+         ++   N   +    V++V     VGKTT
Sbjct: 101 EMIYQKVNDPELIKSI--IIDKIFIYYIQDTEINTAINLKENQTNVVLVVGVNG-VGKTT 157

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEA 185
            I K++KK  D   KV+L AGDTFR+ A++QLK+WA R   D  + ++ G D A++ Y  
Sbjct: 158 SIAKITKKFIDENKKVLLVAGDTFRAGAVEQLKVWAQRLGVDIELPNKEGQDPASVIYAG 217

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K+   +K D++I DT+GRL N   LM  + K+  V+ + D HAPH  L VLDAT GQ+ 
Sbjct: 218 VKKGYEQKYDLVICDTSGRLQNKINLMNELKKIHDVIHKFDEHAPHETLLVLDATQGQSG 277

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F+ V   +G+I+TKMD T+RGG ++ I     IPV  +G+GE ++DL  F  + 
Sbjct: 278 INQAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLDDLSVFDLEM 337

Query: 306 FSAVI-TGC 313
           +   I  G 
Sbjct: 338 YVDSIVLGM 346


>gi|219851207|ref|YP_002465639.1| signal recognition particle-docking protein FtsY [Methanosphaerula
           palustris E1-9c]
 gi|219545466|gb|ACL15916.1| signal recognition particle-docking protein FtsY [Methanosphaerula
           palustris E1-9c]
          Length = 409

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 92/311 (29%), Positives = 153/311 (49%), Gaps = 21/311 (6%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
            E + + +K+            +    I++   + D V +ELE +L+ +D+ + V ++I+
Sbjct: 111 KEKVGFFKKMK--------VFVKERELILAESDVKD-VLDELEMVLLENDVALPVTEEIL 161

Query: 68  EELLTKRYA--KDVSVQRVLYDVSELIHKMLMPLSKPFNWDF----SHRPHVILVVGVNG 121
             +        + +     L  +  L   +L  L + F+         RP  IL  GVNG
Sbjct: 162 RHIRHDLIGSHRKIGTSPDLIVMETLKDALLDVLGEGFDLPAYIRTHDRPVKILFTGVNG 221

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT + K+   +   G  V++ AGDTFR+ AI+Q+ I A+R     +  + G D +A+
Sbjct: 222 TGKTTTVAKVGAFLLKNGFSVVIGAGDTFRAGAIEQIDIHAERLGIKVIQHQQGGDPSAV 281

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++  + A + ++DV++ DTAGR HN + LM  + K+ RV+K      P  V+ V +A  
Sbjct: 282 LFDTVQYAISHQIDVVLADTAGRFHNRANLMNQLAKVKRVMK------PDLVVYVDEAVA 335

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G +A+ + E F    G   +++TK D   +GG  I I  T   P+ FLGVG+G  DL PF
Sbjct: 336 GNDAVIRAEEFEKTVGADAVVLTKADMDPKGGAAISIAHTIGKPLMFLGVGQGYEDLIPF 395

Query: 302 VAKDFSAVITG 312
                   + G
Sbjct: 396 TPATVVDDLLG 406


>gi|194246475|ref|YP_002004114.1| Signal recognition particle-docking protein [Candidatus Phytoplasma
           mali]
 gi|193806832|emb|CAP18261.1| Signal recognition particle-docking protein [Candidatus Phytoplasma
           mali]
          Length = 324

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 95/287 (33%), Positives = 155/287 (54%), Gaps = 10/287 (3%)

Query: 31  GITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
               I++ + +++D + + LE L I++DI       ++ E+  +   K++   + L  + 
Sbjct: 30  NFKKILNLNSKINDNLLKSLEILFIQTDISTETVIYLMTEIKKQIKEKNIIYSKNLSSII 89

Query: 90  ELIHKMLMPLSKPFNW---------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
                 L        +         +F  +P V L VGVNGVGKTT IGK++++  +   
Sbjct: 90  FETMLKLYQKDDFLIYQNKVNFLSNEFFPKPEVYLFVGVNGVGKTTTIGKIAQQFKNKQK 149

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           KV+L AGDTFRS AI+QLKIW  RT +     E     + + +E  + A+ +  DV++ D
Sbjct: 150 KVLLIAGDTFRSGAIEQLKIWGQRTQSTVFFKEQAKSPSNVIFEGLQLAKKENYDVVLCD 209

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRL N   LM+ + K+ RV+ ++  + P     VLDA  GQN + QV +F       G
Sbjct: 210 TAGRLQNKLNLMSELSKIRRVILKVLNYEPQETFLVLDAMMGQNGIDQVSIFQKNVFING 269

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           +I+TK+DG+++GG +  I   + I + ++GVGE + DL PF  K++ 
Sbjct: 270 VILTKLDGSSKGGLIFTIKHLYNIDIKYIGVGENVEDLIPFEIKNYI 316


>gi|170291202|ref|YP_001738018.1| GTP-binding signal recognition particle [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175282|gb|ACB08335.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 437

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 76/307 (24%), Positives = 135/307 (43%), Gaps = 19/307 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L+  ++ I+    +D+        E++  LI +D+ V +  +I   +  +   
Sbjct: 3   LEKLGSSLRNAVSKIMGKSVIDEAAVNEFVREVQRSLIEADVDVKLVLEISRRIKERALK 62

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +            +  + E +  +L         + S + +VI++VG+ G GKTT + KL
Sbjct: 63  ESPPPGFSRRDLAVKILYEELTNLLGRKPAEIPME-SKKTNVIMMVGIEGSGKTTTVAKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +S    KV + + D  R A+  Q++            S+   D   +  E  +  + 
Sbjct: 122 AFWLSKRFGKVGIISADVMRPASKLQIEQLVGP-DIPVF-SKESKDPVEIMREGIEFFKR 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           ++ + +IIDTAGR  + S LM+ +     +        P  V+  +D T GQ A  Q   
Sbjct: 180 ERYNFVIIDTAGRHKDESSLMSELDAYREI-------GPDLVILTIDGTIGQAAYAQARA 232

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F       G+I+TK+DG A+GGG +  V     P+ F+G GE ++DLE F  + F + + 
Sbjct: 233 FAEKVPVGGVIVTKLDGAAKGGGALSAVAASGAPILFIGTGERVDDLERFDPERFVSRLL 292

Query: 312 GCLDYGE 318
           G  D  E
Sbjct: 293 GGGDIIE 299


>gi|227833422|ref|YP_002835129.1| signal recognition particle receptor [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454438|gb|ACP33191.1| signal recognition particle receptor [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 658

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 174/313 (55%), Gaps = 5/313 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            Q+  + +   + KL    + +   + +G+  I+S+  LDD   EE+ED LI +D+G   
Sbjct: 346 PQEDIAPAAGRLGKLRGRLSRSQNAIGQGLMGILSAGDLDDDAWEEIEDTLIMADLGTKS 405

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKP--FNWDFSHRPHVILVVGV 119
             ++ + L  K   + VS +      + E + ++  P             +P VI+VVGV
Sbjct: 406 TMQVTDSLRDKIAERGVSSEAEARAMLREALIEVGHPEMDRSIKAMPNEGKPAVIMVVGV 465

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W  R  A  V  + G+D A
Sbjct: 466 NGTGKTTTTGKLARVLVSMGHNVLLGAADTFRAAAADQLETWGRRVGATTVRGKEGADPA 525

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A      + VDV+++DTAGRLH +  LM  +GK+ RV+++        VL VLDA
Sbjct: 526 SVAFDAVAAGVDQGVDVVLVDTAGRLHTSVDLMDQLGKVKRVVEKK--TDVDEVLLVLDA 583

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           T GQN L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL 
Sbjct: 584 TVGQNGLTQARIFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLA 643

Query: 300 PFVAKDFSAVITG 312
           PF  + F   + G
Sbjct: 644 PFEVEGFVDALLG 656


>gi|150400248|ref|YP_001324015.1| signal recognition particle-docking protein FtsY [Methanococcus
           vannielii SB]
 gi|150012951|gb|ABR55403.1| signal recognition particle-docking protein FtsY [Methanococcus
           vannielii SB]
          Length = 400

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 92/319 (28%), Positives = 161/319 (50%), Gaps = 30/319 (9%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRL--DDGVREELEDLLIR---SDIGVAV 62
            E L +  KL          + + I  ++    +  DD + E L ++ +    +D+   V
Sbjct: 84  KEKLGFFDKL---------SIAKSIKKVLGKDVILTDDDIEEVLLEMEVELLEADVAYEV 134

Query: 63  AQKIVEELLTKRYA---------KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PH 112
            +KI+E L  +            ++++ + +   + E++ +  + + K  +   + + P 
Sbjct: 135 VEKIIESLKNQLVGIKISSKDNPEEITFKALKKSIKEILSQDKIDVFKIIDEKKAKKEPA 194

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V+L VG+NG GKTT I KL   + + G   ++AAGDTFR+ AI+QL      T    +  
Sbjct: 195 VLLFVGINGTGKTTSISKLGYILKEKGYSAVMAAGDTFRAGAIEQLDEHGKNTGIRVIKH 254

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           + G+D+AA+ Y+A + A+A+ ++V++ DTAGR   N  LM  I K++RV K      P  
Sbjct: 255 QKGADSAAVIYDAIEHAKARGINVVLADTAGRQTTNINLMDEIKKVVRVTK------PDL 308

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V+ V D+  G +A+ Q   F+      G I+TK D  A+GG  + I  + K P+ F+GVG
Sbjct: 309 VIFVGDSLAGNDAISQAMEFNDAVNINGAILTKTDADAKGGAALSIAYSIKKPILFMGVG 368

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +  +DL+ F  +     + 
Sbjct: 369 QKYSDLQKFDVEWMIKKLF 387


>gi|269955961|ref|YP_003325750.1| signal recognition particle-docking protein FtsY [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304642|gb|ACZ30192.1| signal recognition particle-docking protein FtsY [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 388

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 108/313 (34%), Positives = 175/313 (55%), Gaps = 7/313 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +  + +   + +L    A +   L   +  ++S   L +   +ELE+ L+ +D+G   A 
Sbjct: 77  ERPAPTAGRLVRLRDRLARSGSPLGARLLAVLSRDHLTEDDWDELEETLLLADVGAGPAG 136

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +++E L T+   + V     +  +   EL+  +   L +  +   +      +V+ V   
Sbjct: 137 ELIEALRTRVRVEGVGDPAAVRAMLRDELVTLVGPDLDRTLHTQGAEPGTPGVVLVVGVN 196

Query: 123 G--KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAA 179
           G  KTT +GKL++ +   G +V+L A DTFR+AA DQL+ W  R     V     G+D A
Sbjct: 197 GTGKTTTVGKLARVLVADGRQVVLGAADTFRAAAADQLQTWGSRVGVPTVRADRDGADPA 256

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A++A ++ ++   DV+++DTAGRL N + LM  +GK+ RV+ R    A   VL VLDA
Sbjct: 257 AVAFDAVREGRSDGADVVLVDTAGRLQNKAGLMDELGKITRVITRE--AALTEVLLVLDA 314

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN L+Q  +F  VAG TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL 
Sbjct: 315 TTGQNGLQQARVFGEVAGVTGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLA 374

Query: 300 PFVAKDFSAVITG 312
           PF A+ F   I G
Sbjct: 375 PFDAEQFVDGILG 387


>gi|295666878|ref|XP_002793989.1| signal recognition particle 54 kDa protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226277642|gb|EEH33208.1| signal recognition particle 54 kDa protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 530

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 143/309 (46%), Gaps = 22/309 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTK--- 73
                 ++   + D+  S  +D    D + +E+   L+ +D+ V + Q + + + +    
Sbjct: 3   LQDLGRRINAAVNDLTRSSNIDEQAFDAMIKEICAALLSADVNVRLVQSLRKSIKSSVQF 62

Query: 74  -----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                   K   +Q+ ++D    +  ++ P  +PF      R +V++ VG+ G GKTT  
Sbjct: 63  SSLPPAVNKKRLIQKTVFDQ---LVALVDPHCEPFKPK-KGRSNVVMFVGLQGAGKTTTC 118

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL++     G +  L   DTFR+ A DQLK  A +    +  S   +D   +A E   +
Sbjct: 119 TKLARHYQTRGFRAALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVAAEGVAK 178

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + ++ D++I+DT+GR    + L A + ++   +K      P   + VLD T GQ A  Q
Sbjct: 179 FKKERFDIIIVDTSGRHKQEADLFAEMTQIQTAIK------PDQTILVLDGTIGQAAEIQ 232

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F A A    +I+TK DG A GGG I  V     P+ FLG GE + DLE F  K F  
Sbjct: 233 SSAFKATADFGAIIITKTDGAAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQ 292

Query: 309 VITGCLDYG 317
            + G  D  
Sbjct: 293 KLLGMGDMA 301


>gi|256372275|ref|YP_003110099.1| signal recognition particle-docking protein FtsY [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008859|gb|ACU54426.1| signal recognition particle-docking protein FtsY [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 367

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 104/312 (33%), Positives = 169/312 (54%), Gaps = 6/312 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
            ++  A    S  R L      +S + ++    I    R  D + + +E++L+ SD+G  
Sbjct: 45  PDEAAAVIGQSRPRTLEGAMRRSSGRFRDLRRRIGGLDR--DALFQTMEEVLLESDLGPT 102

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +   +++E+  +   +  S   +   +   +   L+   +         P VILVVGVNG
Sbjct: 103 LTAAVLDEVR-RETGRGASADDLWQALRRALRARLLSGDRSLAVAAEL-PTVILVVGVNG 160

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT +GKL+ ++ + G  V+ AA     +AA +Q+ +WA+R+    V  + G+D  A+
Sbjct: 161 AGKTTTVGKLAARLRERGDVVIAAADTFR-AAATEQVAVWAERSGVRLVAGQQGADPGAV 219

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            ++A   A+A+   V++ DTAGRL N + LMA +GK+ RV ++   H    VL V+DATT
Sbjct: 220 VFDAVDAAKARGAAVVVCDTAGRLQNKANLMAELGKVRRVAEKAAGH-VDEVLLVVDATT 278

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V G TG+++TK+DG+A+GG  + I    K+PV  +GVGE + DL+PF
Sbjct: 279 GQNGLSQARVFGEVTGLTGVVLTKLDGSAKGGIALAIEHEFKVPVKLVGVGEALEDLQPF 338

Query: 302 VAKDFSAVITGC 313
              DF   +   
Sbjct: 339 DPDDFVDALLDM 350


>gi|134102503|ref|YP_001108164.1| signal recognition particle GTPase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915126|emb|CAM05239.1| signal recognition particle GTPase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 503

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 105/282 (37%), Positives = 160/282 (56%), Gaps = 16/282 (5%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           D+   EE+ED L+ +D+G A   +I + L ++  ++ +     +     L+ ++L+    
Sbjct: 227 DEESWEEIEDTLLMADLGAATTTEITDRLRSELASRGLRTSEQVRA---LLREVLVDALG 283

Query: 102 P-----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           P            +     +P V+LVVGVNG GKTT  GKL++ +   G  V+L A DTF
Sbjct: 284 PDMQRSVQALPHGDPADGGKPAVVLVVGVNGTGKTTTTGKLARVLVADGRTVLLGAADTF 343

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA++QL  W +R  A+ V    G+D A++A+EA  +     VD ++IDTAGRLH  + 
Sbjct: 344 RAAAVEQLATWGERVGAEVVRGNEGADPASVAFEAVSRGSDTAVDTVLIDTAGRLHTKTG 403

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +GK+ RV+++        VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA
Sbjct: 404 LMDELGKVKRVVEKR--AQVDEVLLVLDATTGQNGLTQARVFSDVVDVTGIVLTKLDGTA 461

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +GG +  +     +PV  +G+GEG +DL PF    F   + G
Sbjct: 462 KGGIVFQVQRELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 503


>gi|296394653|ref|YP_003659537.1| signal recognition particle-docking protein FtsY [Segniliparus
           rotundus DSM 44985]
 gi|296181800|gb|ADG98706.1| signal recognition particle-docking protein FtsY [Segniliparus
           rotundus DSM 44985]
          Length = 425

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 107/303 (35%), Positives = 167/303 (55%), Gaps = 5/303 (1%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L    A +   +   +  ++    LD+   E++E  L+ +D+G +  + ++++L  
Sbjct: 125 RWGNLRGRLARSQSSVGRVLVGLLGGGDLDEESWEDIETTLLAADLGASTTEHVIDKLRA 184

Query: 73  KRYAKDV-SVQRVLYDVSELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGKTTVIG 129
                +V S  +    + E++   L P           + RP V+LVVGVNG GKTT  G
Sbjct: 185 ALARAEVRSEAQARAVLKEVLIGELKPELDRSVRALPHAERPSVVLVVGVNGTGKTTTTG 244

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++ +   G +V+L A DTFR+AA+DQL+ W  R  A+ V    G+D A++A+EA ++ 
Sbjct: 245 KLARVLIADGRRVLLGAADTFRAAAVDQLQTWGRRVGAEVVTGAEGADPASVAFEAVRRG 304

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV++IDTAGRLH  + LM  +GK+ RV++R    A   V+ VLDAT GQN L Q 
Sbjct: 305 VETGADVVLIDTAGRLHTKTGLMDELGKIKRVVERK--AAVDEVVLVLDATIGQNGLHQA 362

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F  V   T + +TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    F   
Sbjct: 363 KVFSEVVDVTAVALTKLDGTAKGGIVFAVQQELGVPVKLVGLGEGKDDLAPFEPVAFVDA 422

Query: 310 ITG 312
           + G
Sbjct: 423 LLG 425


>gi|39939164|ref|NP_950930.1| signal recognition particle GTPase [Onion yellows phytoplasma OY-M]
 gi|39722273|dbj|BAD04763.1| signal recognition particle GTPase [Onion yellows phytoplasma OY-M]
          Length = 426

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/274 (25%), Positives = 132/274 (48%), Gaps = 13/274 (4%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102
           +++  L+ +D+ + V  K  E +  K   ++V       + ++  V+E + ++L      
Sbjct: 3   DIKVSLVEADVHLQVIDKFNEIIEKKTLKQEVLKGLNPKEHIIKIVNETLIQILGSTRAD 62

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIW 161
             +  +     ++++G+ G GKTT +GKL+  +      KV+L A D +R  A++QLK+ 
Sbjct: 63  LTFKPNCNLDTLMLIGLQGSGKTTTVGKLALWLRKKNSKKVLLVACDIYRPGAVEQLKVI 122

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             + + D   S+  +    +     K A  +  D +IIDTAGRL  +  +M  + ++   
Sbjct: 123 GKQINIDVF-SKPDTAVLDIVDAGLKHALQEGYDAVIIDTAGRLDIDETMMQELQQIKA- 180

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                   P  +L V+D  +GQ +    + FH   G TG+I+TKMD   +GG  + +   
Sbjct: 181 -----KANPSEILLVVDCLSGQQSANIAQSFHNQVGATGVILTKMDADTKGGAALSVRAM 235

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             +P+ F+   E I+ L+PF     ++ + G  D
Sbjct: 236 TDLPLKFVSSSETIDSLDPFNPDRMASRLLGMGD 269


>gi|297571145|ref|YP_003696919.1| signal recognition particle-docking protein FtsY [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931492|gb|ADH92300.1| signal recognition particle-docking protein FtsY [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 395

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 173/308 (56%), Gaps = 6/308 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            V     S +++L    A+ S  L + +  I+S   L     EELE+ L+ +D+G+    
Sbjct: 92  DVPESVTSRMQRLRARLAN-SGGLGKALLSILSRGELSAADWEELEETLLMADVGLDATT 150

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            I++ L T                +EL+  + +   +  N   +  P  IL+VGVNG GK
Sbjct: 151 DILDSLRTAVKVAGSDADVRALLRTELLKAVHIDKDRSLNLGAA--PSTILMVGVNGTGK 208

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAY 183
           TT  GKL++ +      V+L A DTFR+AA DQL  W +R   D V S+  G+D A++A+
Sbjct: 209 TTTTGKLARLLVAEEHSVLLGAADTFRAAAADQLSTWGERVGVDVVRSDREGADPASVAF 268

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA KQ     VDV+I+DTAGRL N + LM  +GK+ RV+++  P     VL VLDATTGQ
Sbjct: 269 EAVKQGADAGVDVVIVDTAGRLQNKAGLMDELGKIKRVMEKTVPTG--EVLLVLDATTGQ 326

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N +RQ E+F   AG TG++++K+DG+A+GG +I +     +PV F+G+GEG +D  PF  
Sbjct: 327 NGMRQAEVFAEAAGITGIVLSKLDGSAKGGIVISVQRALGVPVKFVGLGEGADDFAPFDP 386

Query: 304 KDFSAVIT 311
             F   + 
Sbjct: 387 STFVDSLL 394


>gi|224013926|ref|XP_002296627.1| signal recognition particle alpha [Thalassiosira pseudonana
           CCMP1335]
 gi|220968979|gb|EED87323.1| signal recognition particle alpha [Thalassiosira pseudonana
           CCMP1335]
          Length = 287

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 154/283 (54%), Gaps = 18/283 (6%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
            + ++LED L+++D+G+A    ++EE       ++ +      D+  L+   L+    P 
Sbjct: 8   NLLDQLEDTLLQADLGMATTDDVLEEARF--LREESTEIFSRDDIKALLRGKLLEALGPS 65

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWA 162
             + +    +  ++G NG+GKTT IGKL+ ++    G KV+LAA DTFR+ A+ QL+ WA
Sbjct: 66  TNNPT-PLTIHFIMGANGMGKTTTIGKLAHRLKTESGQKVLLAACDTFRAGAVAQLEQWA 124

Query: 163 DRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           DR   D    +E  +  +A+ + A  +A  +  +VL++DT+GRL NN  L A + KM RV
Sbjct: 125 DRAQVDCFSPNESTNGPSAVLFGALDKAIKEDYNVLLVDTSGRLSNNDALTAELVKMKRV 184

Query: 222 LKRL-------------DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           +++              +   PH  L V+DA  G+ AL   + +    G +GLI+TK+DG
Sbjct: 185 IQKRMSTKFDSAVKPIPNESVPHETLLVIDAAQGRMALDSAKQWDKEVGLSGLILTKLDG 244

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +A+GG ++ +     +PV  +GVGEG+ DL  F  + F   + 
Sbjct: 245 SAKGGSVVAVSRELGLPVKLVGVGEGLEDLRDFEPESFVDGLL 287


>gi|328885323|emb|CCA58562.1| Signal recognition particle receptor protein FtsY [Streptomyces
           venezuelae ATCC 10712]
          Length = 430

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 177/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+E+ L+ +D+GVA  Q
Sbjct: 121 EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLTADVGVAPTQ 180

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNG 121
           ++VE L  +           L   + E +  +L P           S  P V++VVGVNG
Sbjct: 181 ELVERLRERVRVLGTRTPEELRGLLREELVALLGPELDRTVHTESPSDVPGVVMVVGVNG 240

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 241 TGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 300

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A K+  A+K DV++IDTAGRLH  + LM  +GK+ RV+++  P     +L VLDATT
Sbjct: 301 AYDAVKEGIAEKADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGP--LDEILLVLDATT 358

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF
Sbjct: 359 GQNGLIQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPF 418

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 419 EPGAFVDALIG 429


>gi|262184411|ref|ZP_06043832.1| signal recognition particle receptor [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 636

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 174/313 (55%), Gaps = 5/313 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            Q+  + +   + KL    + +   + +G+  I+S+  LDD   EE+ED LI +D+G   
Sbjct: 324 PQEDIAPAAGRLGKLRGRLSRSQNAIGQGLMGILSAGDLDDDAWEEIEDTLIMADLGTKS 383

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKP--FNWDFSHRPHVILVVGV 119
             ++ + L  K   + VS +      + E + ++  P             +P VI+VVGV
Sbjct: 384 TMQVTDSLRDKIAERGVSSEAEARAMLREALIEVGHPEMDRSIKAMPNEGKPAVIMVVGV 443

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W  R  A  V  + G+D A
Sbjct: 444 NGTGKTTTTGKLARVLVSMGHNVLLGAADTFRAAAADQLETWGRRVGATTVRGKEGADPA 503

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A      + VDV+++DTAGRLH +  LM  +GK+ RV+++        VL VLDA
Sbjct: 504 SVAFDAVAAGVDQGVDVVLVDTAGRLHTSVDLMDQLGKVKRVVEKK--TDVDEVLLVLDA 561

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           T GQN L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL 
Sbjct: 562 TVGQNGLTQARIFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLA 621

Query: 300 PFVAKDFSAVITG 312
           PF  + F   + G
Sbjct: 622 PFEVEGFVDALLG 634


>gi|253741984|gb|EES98841.1| SRP GTPase [Giardia intestinalis ATCC 50581]
          Length = 530

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 133/303 (43%), Gaps = 24/303 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK------ 73
            FA T L   E +  ++          +E   +L  +D+     + + + + TK      
Sbjct: 16  KFAKTRLTTNEAVNALV----------DEFIGVLEAADVPTRTLEPMRKSMTTKILGDPA 65

Query: 74  -RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
               +  + Q V   V + +  ML P   PF     +R +VI+ VG+ G GKTT   K  
Sbjct: 66  IMEGRANTQQVVQRIVVQELVSMLSPDRPPFR-PVRNRANVIMFVGLQGAGKTTTCVKFG 124

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G +V L   DTFR+ A DQLK         F  S    D   +A +  K   + 
Sbjct: 125 AYYKRKGWRVGLVCCDTFRTGAFDQLKQNCTAVKLPFYGSYSEKDPVQIAQDGVKHFLSL 184

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             +++I+DT+GR      L   +  +   ++      PH  + VLD++ GQ A  Q + F
Sbjct: 185 NFELIILDTSGRHRQEEALFTEMKLIDNAVQ------PHDHVFVLDSSIGQAAYEQADAF 238

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                   +I+TK+DG +RGGG +  V   K P+ FLG GE I DLE F    F +V+ G
Sbjct: 239 SNAVEIGSVILTKLDGHSRGGGALAAVSATKAPIVFLGTGEKIEDLEFFDPSRFVSVMLG 298

Query: 313 CLD 315
             D
Sbjct: 299 YGD 301


>gi|25028526|ref|NP_738580.1| putative cell division protein FtsY [Corynebacterium efficiens
           YS-314]
 gi|23493811|dbj|BAC18780.1| putative cell division protein FtsY [Corynebacterium efficiens
           YS-314]
          Length = 636

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 177/307 (57%), Gaps = 5/307 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +   I KL    A +     + +  I+++  LD+   E++E +LI++D+G  V  ++VE
Sbjct: 332 PAAGRIGKLRGRLARSQNVFGKSVLGILTAGDLDEDAWEDIEAMLIKADLGATVTMRVVE 391

Query: 69  ELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKT 125
           EL  K     VS +     +  + LI      L +      +  +P V+LVVGVNG GKT
Sbjct: 392 ELRDKIATHGVSSEAEARAMLRATLIDACRPDLDRSIRAMPYEGKPAVVLVVGVNGTGKT 451

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T  GKL++ +   G +V+L A DTFR+AA DQL+ W  R  A  V    G+D A++A++A
Sbjct: 452 TTTGKLARVLVSMGHRVLLGAADTFRAAAADQLETWGRRVGATTVRGAEGADPASVAFDA 511

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +   ++ DV++IDTAGRLH ++ LM  +GK+ RV+++  P     VL VLDAT GQN 
Sbjct: 512 VAKGVEQQADVVLIDTAGRLHTSTGLMDQLGKVKRVVEKKAP--VDEVLLVLDATVGQNG 569

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           ++Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + 
Sbjct: 570 MQQARIFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEG 629

Query: 306 FSAVITG 312
           F   + G
Sbjct: 630 FVDALLG 636


>gi|150400486|ref|YP_001324252.1| signal recognition particle-docking protein FtsY [Methanococcus
           aeolicus Nankai-3]
 gi|150013189|gb|ABR55640.1| signal recognition particle-docking protein FtsY [Methanococcus
           aeolicus Nankai-3]
          Length = 383

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 97/276 (35%), Positives = 143/276 (51%), Gaps = 18/276 (6%)

Query: 56  SDIGVAVAQKIVEELLT-----KRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-----NW 105
           +D+   V +K++E L       K  AKD   +  +  +   I ++L              
Sbjct: 105 ADVAYEVVEKLIESLRNQLIGIKISAKDDPEEITINALRNAIKEVLSQKEIDIYKLIEEK 164

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             +  P VI+VVG+NG GKTT I KL+ K+ + G  V+LAAGDTFR+ AI+QL+  A   
Sbjct: 165 KSNGEPTVIVVVGINGTGKTTTISKLAYKLMNNGYSVVLAAGDTFRAGAIEQLEEHAKNI 224

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
            A  +  + GSD AA+ Y+A   A+A+ + V++ DTAGR   N  LMA I K++RV    
Sbjct: 225 GAKVIKHQKGSDGAAVIYDAINHAKARGISVVLADTAGRQTTNINLMAEIKKVVRVSN-- 282

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  V+ V D+  G +A+ Q E F+ +    G+I+TK D  A+GG  + I      P
Sbjct: 283 ----PDLVVFVGDSLAGNDAITQAEEFNNMVNIDGVILTKTDADAKGGAALSIAHAIGKP 338

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321
           + FLGVG+   DL  F        + G  D  ++KI
Sbjct: 339 ILFLGVGQRYEDLMEFNVNWMINKLFG--DENDDKI 372


>gi|259507580|ref|ZP_05750480.1| cell division protein FtsY [Corynebacterium efficiens YS-314]
 gi|259164854|gb|EEW49408.1| cell division protein FtsY [Corynebacterium efficiens YS-314]
          Length = 624

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 177/307 (57%), Gaps = 5/307 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +   I KL    A +     + +  I+++  LD+   E++E +LI++D+G  V  ++VE
Sbjct: 320 PAAGRIGKLRGRLARSQNVFGKSVLGILTAGDLDEDAWEDIEAMLIKADLGATVTMRVVE 379

Query: 69  ELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKT 125
           EL  K     VS +     +  + LI      L +      +  +P V+LVVGVNG GKT
Sbjct: 380 ELRDKIATHGVSSEAEARAMLRATLIDACRPDLDRSIRAMPYEGKPAVVLVVGVNGTGKT 439

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T  GKL++ +   G +V+L A DTFR+AA DQL+ W  R  A  V    G+D A++A++A
Sbjct: 440 TTTGKLARVLVSMGHRVLLGAADTFRAAAADQLETWGRRVGATTVRGAEGADPASVAFDA 499

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +   ++ DV++IDTAGRLH ++ LM  +GK+ RV+++  P     VL VLDAT GQN 
Sbjct: 500 VAKGVEQQADVVLIDTAGRLHTSTGLMDQLGKVKRVVEKKAP--VDEVLLVLDATVGQNG 557

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           ++Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + 
Sbjct: 558 MQQARIFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEG 617

Query: 306 FSAVITG 312
           F   + G
Sbjct: 618 FVDALLG 624


>gi|42527548|ref|NP_972646.1| signal recognition particle-docking protein FtsY [Treponema
           denticola ATCC 35405]
 gi|41818133|gb|AAS12557.1| signal recognition particle-docking protein FtsY [Treponema
           denticola ATCC 35405]
 gi|325474494|gb|EGC77681.1| signal recognition particle-docking protein FtsY [Treponema
           denticola F0402]
          Length = 292

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 147/289 (50%), Gaps = 4/289 (1%)

Query: 26  LKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
                G+  +    +  ++   E+L D LI  DIG   A +I   L      + +  +  
Sbjct: 4   KSFAAGLKKLFGLYKGPEESFFEDLTDTLIEGDIGAKTALEIEASLRELCKKEKLVSEDD 63

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVM 143
           +  ++ L + +L  +          +  + LV+GVNGVGKTT IGK++    +  G  ++
Sbjct: 64  V--LNGLYNILLPYVKVTSLIPEKDKVSIYLVLGVNGVGKTTSIGKMAHYYKEKYGTPII 121

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           LAAGDTFR+AAI+QLK   ++     V  + G D  A+ ++A     +    +++ DTAG
Sbjct: 122 LAAGDTFRAAAIEQLKFHGEKNDVRVVAHQHGGDPGAVIFDAGDAMASSGGGLVLADTAG 181

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RLHN   L+  + K+ R+ K       +  + VLDATTGQN LRQ E+FH   G   + +
Sbjct: 182 RLHNKDNLVRELQKIDRIAKTKASEGCYKKILVLDATTGQNGLRQAEVFHEAIGVDAVFL 241

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           TK D TA+GG  +       +P+ F+G GE   ++ PF A+++     G
Sbjct: 242 TKYDSTAKGGVAVTAGKELNLPMLFVGTGEKYENISPFSAENYVKEFIG 290


>gi|193216479|ref|YP_001999721.1| cell division protein [Mycoplasma arthritidis 158L3-1]
 gi|193001802|gb|ACF07017.1| cell division protein [Mycoplasma arthritidis 158L3-1]
          Length = 351

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 115/307 (37%), Positives = 180/307 (58%), Gaps = 14/307 (4%)

Query: 19  KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
            G + ++    E I  + +   +++    E+LE++LI +DI   +   IV E   +   +
Sbjct: 49  AGLSKSNNSFTESIKALQNKYNKINKEFFEDLEEILIMADISARLVTIIVNECKKEVRNE 108

Query: 78  DVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           ++   +++   SE+I   L         +    N + ++R +VILVVGVNG GKTT I K
Sbjct: 109 NIEDPKLI---SEIIADKLFTIYASNSVVDTSLNIE-NNRINVILVVGVNGSGKTTSISK 164

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQA 189
           L+KK+S  G KV++AA DTFR+AA++QL+IWA R   D +  ++  +D AA+ Y+A  +A
Sbjct: 165 LAKKLSSEGKKVLIAAADTFRAAAVEQLEIWAKRVGVDIIKPTQNETDPAAVVYKAIDKA 224

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + +K DVL+IDTAGRL N   LM  + K+ +VL+     APH  L VLDATTGQN + Q 
Sbjct: 225 KEEKYDVLLIDTAGRLQNKVNLMQELAKINKVLESKIEGAPHESLLVLDATTGQNGIVQA 284

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           ++F      TG+++TKMDGT+RGG ++ I     + V ++G+GE ++DL  F    +   
Sbjct: 285 KVFTQATPLTGIVLTKMDGTSRGGIILTIKDEIGLNVKYVGLGEKVDDLMEFDLDSYIYG 344

Query: 310 IT-GCLD 315
           +  G  D
Sbjct: 345 LMRGLND 351


>gi|159904596|ref|YP_001548258.1| signal recognition particle-docking protein FtsY [Methanococcus
           maripaludis C6]
 gi|159886089|gb|ABX01026.1| signal recognition particle-docking protein FtsY [Methanococcus
           maripaludis C6]
          Length = 379

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 88/323 (27%), Positives = 159/323 (49%), Gaps = 30/323 (9%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIR----SDIGVAV 62
            E + +  KL          + + I  ++     L +   E++ + +      +D+   V
Sbjct: 63  KEKIGFFDKL---------SITKSIKKVLGQDVVLTESDIEDILEEMEMELFEADVAFEV 113

Query: 63  AQKIVEELLTKRYA---------KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PH 112
            +KI+E L  +            +++++  +   + E++ +  + +    +   +   P 
Sbjct: 114 VEKIIESLKNQLVGLKISARDNPEEITINALKKSIKEILSQEKIDVFGLIDEKKAKGEPA 173

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           ++L VG+NG GKTT I KL+  + + G  V++AAGDTFR+ AI+QL+     T    +  
Sbjct: 174 ILLFVGINGTGKTTSISKLAYILKERGYSVVMAAGDTFRAGAIEQLEEHGKNTDIKVIKH 233

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           + G+D+AA+ Y+A   ++AK ++V++ DTAGR   N  LM  I K++RV K      P  
Sbjct: 234 QKGADSAAVIYDAINHSKAKGINVVLADTAGRQTTNINLMDEIKKVVRVTK------PDL 287

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           ++ V D+  G +A+ Q E F+      G I+TK D  A+GG  + I      P+ F+GVG
Sbjct: 288 IIFVGDSLAGNDAISQAEEFNNAINIHGAILTKTDADAKGGAALSIAYAIGKPILFMGVG 347

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           +  +DL+ F  +     +    D
Sbjct: 348 QRYSDLQEFDVEWMIKKLFSEED 370


>gi|122920835|pdb|2J7P|D Chain D, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
           And Ftsy
 gi|122920836|pdb|2J7P|E Chain E, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
           And Ftsy
          Length = 283

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 112/267 (41%), Positives = 154/267 (57%), Gaps = 19/267 (7%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNW---------- 105
           D+G++  ++I++E+         S ++ L + V E +  ML P  +              
Sbjct: 22  DVGLSATEEILQEVRA-------SGRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKP 74

Query: 106 -DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
                +  V+LVVGVNGVGKTT I KL +   + G KVM  AGDTFR+A   QL  W  R
Sbjct: 75  KPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKR 134

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            S   +    G+D AALAY+A +  +A+  D+L +DTAGRLH    LM  + K+ R + +
Sbjct: 135 LSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAK 194

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            DP  P  V  VLDA TGQN L Q + FH   G TG+I+TK+DGTA+GG LIPIV T K+
Sbjct: 195 ADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKV 254

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVIT 311
           P+ F+GVGEG +DL+PF  + F   + 
Sbjct: 255 PIKFVGVGEGPDDLQPFDPEAFVEALL 281


>gi|118137450|pdb|2CNW|D Chain D, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
 gi|118137451|pdb|2CNW|E Chain E, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
 gi|118137452|pdb|2CNW|F Chain F, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
 gi|126030874|pdb|2IYL|D Chain D, Structure Of An Ftsy:gdp Complex
          Length = 284

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 112/267 (41%), Positives = 154/267 (57%), Gaps = 19/267 (7%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNW---------- 105
           D+G++  ++I++E+         S ++ L + V E +  ML P  +              
Sbjct: 23  DVGLSATEEILQEVRA-------SGRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKP 75

Query: 106 -DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
                +  V+LVVGVNGVGKTT I KL +   + G KVM  AGDTFR+A   QL  W  R
Sbjct: 76  KPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKR 135

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            S   +    G+D AALAY+A +  +A+  D+L +DTAGRLH    LM  + K+ R + +
Sbjct: 136 LSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAK 195

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            DP  P  V  VLDA TGQN L Q + FH   G TG+I+TK+DGTA+GG LIPIV T K+
Sbjct: 196 ADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKV 255

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVIT 311
           P+ F+GVGEG +DL+PF  + F   + 
Sbjct: 256 PIKFVGVGEGPDDLQPFDPEAFVEALL 282


>gi|268323505|emb|CBH37093.1| signal recognition 54 kDa protein [uncultured archaeon]
          Length = 443

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 21/303 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               S  LKE I  I  ++R+D    D +  +++  L+++D+ +++ +++ + +  +   
Sbjct: 2   LGKLSSSLKESIRKIAKAKRIDKRTVDELVRDIQRALLQADVKISLVKELSDHIRERSLK 61

Query: 77  KDV---SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           + +     + V+  V E +  ++    +        +P  I++VG++G GKT+   KL++
Sbjct: 62  EKMLLNPREHVIKVVYEELINIIGKGVE-----VPLKPQKIMMVGLHGAGKTSSCAKLAR 116

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAK 192
                GLK  +   D +R  A DQL+   D+    F        +   +      +    
Sbjct: 117 YFQKKGLKPAVICADVYRPGASDQLRQLCDKIGVPFYDGQPEDRNVLRIVTSGVNEF--D 174

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K D+ IIDTAGR      ++  I  + +  K      P     VLDA+ GQ A  Q + F
Sbjct: 175 KYDIKIIDTAGRHALEPEMIDEIMDIEKATK------PEQRFIVLDASIGQQASVQAKAF 228

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
               G TG+I+TKMDGTA+GGG +  V      V F+G GE ++D E F +  F + + G
Sbjct: 229 DDAIGITGIIITKMDGTAKGGGALSAVAETDSGVAFIGTGETVDDFEKFESDGFISRLLG 288

Query: 313 CLD 315
             D
Sbjct: 289 MGD 291


>gi|290979105|ref|XP_002672275.1| predicted protein [Naegleria gruberi]
 gi|284085850|gb|EFC39531.1| predicted protein [Naegleria gruberi]
          Length = 484

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 140/304 (46%), Gaps = 15/304 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTK--R 74
            +  S +L   +  I S   +DD       +E+   L+ +D+      ++   +  +   
Sbjct: 3   LSELSSQLSNALLTIHSQSVMDDKSVNKFLKEISKALLEADVNCEQVVQVYNGIKEELDN 62

Query: 75  YAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            ++DV+ ++ +   + + + K+  P  K        + +VIL +G+ G GKTT   K + 
Sbjct: 63  MSQDVNRKKNIKRILKKELCKLFDPGVKAIK-PVKGKQNVILFIGLRGAGKTTTASKFAM 121

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G K  +   +TFR+ A D L+  + R +  F  +   +D   +A +  +  + + 
Sbjct: 122 FYKKKGFKCAIVNSNTFRTGAFDSLRHNSLRDTIPFYGNVFETDPIKIAKDGVETFKKEN 181

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D++I+DT+ R      L   +  +   +       P+ ++ V+D+  GQ+   QV  F 
Sbjct: 182 YDLIIVDTSARTIQEESLFEEMKLISEAIT------PNDIILVMDSKIGQSIKEQVTTFK 235

Query: 254 AVAG-TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +       +I+TK+DG ++GGG +  +   K P+ F+G GE  + L+PF  + F + + G
Sbjct: 236 SRIPTLGSIILTKLDGHSKGGGALSAIAATKTPISFIGTGEYYDSLQPFEVEGFVSRLLG 295

Query: 313 CLDY 316
             +Y
Sbjct: 296 EGNY 299


>gi|219123971|ref|XP_002182288.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406249|gb|EEC46189.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 298

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 103/300 (34%), Positives = 167/300 (55%), Gaps = 23/300 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL------TKR 74
            A +  +L + I  + +     + V ++L+D+L+++D+G   A+ IV E+       TK 
Sbjct: 1   LAKSRNRLLQNIEGLFTGVS-PEQVLDDLQDILLQADLGTKTAEDIVAEVKSLREDSTKM 59

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            +KD     +   + E ++  L   +  F+      P V+ V+G NG+GKTT IGKL+ +
Sbjct: 60  LSKDDLKSIMRGKLIEALNTELSG-AIQFSPLVDKTPTVLFVMGANGMGKTTTIGKLAHR 118

Query: 135 MSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAK 192
           + + G   V+LAA DTFR+ A++QL+ WA+R   D V  S   +  +A+ Y A  +  A+
Sbjct: 119 LRNEGNQTVLLAACDTFRAGAVEQLQQWAERAQVDMVGPSTKVTTPSAVLYAALDKGIAE 178

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP-------------HAPHSVLQVLDA 239
           K D +++DT+GRL NN  L A + KM +V+++                  PH  L VLDA
Sbjct: 179 KYDTILVDTSGRLSNNDQLTAELKKMKKVIQKRLSRENDEEGKPLPNLQVPHETLLVLDA 238

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
             G+ AL   ++++   G +GLI+TK+DG+ARGG ++ I    ++PV  +GVGEGI DL 
Sbjct: 239 AQGRMALDSAKVWNEEIGLSGLILTKLDGSARGGSVVAISRDIQLPVKLIGVGEGIEDLR 298


>gi|312880079|ref|ZP_07739879.1| signal recognition particle-docking protein FtsY [Aminomonas
           paucivorans DSM 12260]
 gi|310783370|gb|EFQ23768.1| signal recognition particle-docking protein FtsY [Aminomonas
           paucivorans DSM 12260]
          Length = 314

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 109/303 (35%), Positives = 160/303 (52%), Gaps = 6/303 (1%)

Query: 17  LTKGF----ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           L KGF         + + G+  + S   + +   E+LE+ L+  D+G+ + + ++E+L +
Sbjct: 4   LWKGFWDKVKDIRSRWEYGVAGLFSDDPVSEEFFEKLEEHLLAGDVGLELTESLLEDLRS 63

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
               + V     L    ++ I   L  + K      F     VIL+VGVNG GKTT   K
Sbjct: 64  FAKREKVGKASDLKQHFAQEIKDTLQRVPKMGEPLSFDGPLGVILLVGVNGSGKTTTAAK 123

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+      G  V+LAA DTFR+AAIDQL+IW +RT    +    GSDAAA+ ++A +  +
Sbjct: 124 LAASFRKRGETVVLAAADTFRAAAIDQLRIWGERTGTRVIAQSPGSDAAAVVFDALQAVK 183

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
           +    V+++DTAGRLH    LM  + K+ RV +R    +    L VLDA TGQN L Q E
Sbjct: 184 SVGRGVVVVDTAGRLHTKHNLMEELTKIHRVARREVDPSCIETLLVLDAVTGQNGLVQAE 243

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            FHA    TG ++TK D TARGG L+ +     +PV ++G+GE   DL+ F    F   +
Sbjct: 244 TFHAAFPLTGFVLTKFDHTARGGILLSLASRLALPVRYVGLGEKEEDLDSFDVDSFVEGL 303

Query: 311 TGC 313
              
Sbjct: 304 LSL 306


>gi|76800746|ref|YP_325754.1| signal recognition particle receptor SRalpha [Natronomonas
           pharaonis DSM 2160]
 gi|76556611|emb|CAI48182.1| signal recognition particle receptor SRalpha [Natronomonas
           pharaonis DSM 2160]
          Length = 368

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 85/262 (32%), Positives = 136/262 (51%), Gaps = 13/262 (4%)

Query: 57  DIGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKML--MPLSKPFNWDFSH 109
           D+ ++VAQ+I + +  +   +     +   Q V   ++E +  ++             + 
Sbjct: 111 DVEMSVAQEITDRIREELVGETRKQVESGEQVVERAIAEALRDVISVGQFDFESRIADAE 170

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P  I+  GVNGVGKTT I KL++   + G   +LA GDT+R+ A +Q++  AD      
Sbjct: 171 KPVTIVFTGVNGVGKTTSIAKLARWFEERGHSSVLANGDTYRAGANEQIEEHADALDKKI 230

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +  E G D AA+ Y+A + A+A  VDV++ DTAGRLH    LMA + K+ RV+       
Sbjct: 231 ITHEQGGDPAAVIYDAVEYAEANDVDVVLGDTAGRLHTADDLMAQLEKIDRVVD------ 284

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V +A  GQ+A  + + F+  A   G I+TK D  ++GG  I I      P+ FL
Sbjct: 285 PDLTLFVDEAVAGQDATNRAKEFNDAAEIDGAILTKADADSQGGAAISIAHVTGKPILFL 344

Query: 290 GVGEGINDLEPFVAKDFSAVIT 311
           G G+G +D+E F   +  + + 
Sbjct: 345 GTGQGYDDIERFDPDEIVSRLL 366


>gi|326382862|ref|ZP_08204552.1| signal recognition particle-docking protein FtsY [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198452|gb|EGD55636.1| signal recognition particle-docking protein FtsY [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 488

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 111/306 (36%), Positives = 169/306 (55%), Gaps = 5/306 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +   + +L    + +   +   +  ++ +  LD+   EE+ED L+ +D+G A    + E
Sbjct: 185 PTEGRLSRLRGRLSRSQGAIGASVLGLLGAGDLDEDSWEEIEDTLVMADLGTAATSTVTE 244

Query: 69  ELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKT 125
            L  +    K  S       +  ++ + L P           + RP V+LVVGVNGVGKT
Sbjct: 245 RLREELATGKVRSADDARAALKRVLVEQLRPDLDRSVKALPHADRPAVVLVVGVNGVGKT 304

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T  GKL++ +   G +V+L A DTFR+AA DQL+ W +R  A  V  + G+D A++A++A
Sbjct: 305 TTTGKLARVLVADGRRVLLGAADTFRAAAADQLQTWGERVGAGIVRGKEGADPASVAFDA 364

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                   VDV++IDTAGRLH  S LM  +GK+ RV+++        VL VLDAT GQN 
Sbjct: 365 VNTGIGDGVDVVLIDTAGRLHTKSGLMDELGKVKRVVEKK--AVVDEVLLVLDATVGQNG 422

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q ++F  V   TG+++TK+DGTA+GG +  I     +PV  +G+GEG +DL PF  + 
Sbjct: 423 LMQAKVFAEVVSLTGVVLTKLDGTAKGGIVFRIQEELGVPVKLVGLGEGADDLAPFEPEA 482

Query: 306 FSAVIT 311
           F   + 
Sbjct: 483 FVDALL 488


>gi|254479761|ref|ZP_05093040.1| signal recognition particle-docking protein FtsY [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034301|gb|EEB75096.1| signal recognition particle-docking protein FtsY [Carboxydibrachium
           pacificum DSM 12653]
          Length = 257

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 104/256 (40%), Positives = 158/256 (61%), Gaps = 5/256 (1%)

Query: 21  FASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
                  L   + +++S  +++D+ + EELE+ LI +D+GV    KI++ L  K   + +
Sbjct: 5   LQKFKENLTAKLNEVLSFGKKVDEELFEELEEALILADVGVDTTYKIIQSLKQKTKEEKI 64

Query: 80  SVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
                + ++ ++ I+++L    +PF       P VIL+VGVNGVGKTT IGKL+      
Sbjct: 65  FEASKVRELLAQEIYEILQKDVEPFVL---TSPMVILIVGVNGVGKTTTIGKLAHLYKKQ 121

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G  VM+ A DTFR+AAIDQL++WA R +   +  + GSD A++ ++  + A+A+ +DV+I
Sbjct: 122 GKSVMMVAADTFRAAAIDQLEVWAKRVNCPIIKHQEGSDPASVVFDGLQSAKARGIDVVI 181

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
            DTAGRLHN   LM  + K+ +V+ R    A      VLDATTGQNAL+Q ++F  VA  
Sbjct: 182 CDTAGRLHNKKNLMEELRKIRKVIDREYSEARVETFLVLDATTGQNALQQAKIFKEVADI 241

Query: 259 TGLIMTKMDGTARGGG 274
           TG+I+TK+DGTA+GG 
Sbjct: 242 TGIILTKLDGTAKGGI 257


>gi|13508164|ref|NP_110113.1| cell division protein FtsY [Mycoplasma pneumoniae M129]
 gi|2500880|sp|P75362|FTSY_MYCPN RecName: Full=Cell division protein ftsY homolog
 gi|1674100|gb|AAB96064.1| cell division protein FtsY [Mycoplasma pneumoniae M129]
 gi|301633304|gb|ADK86858.1| signal recognition particle-docking protein FtsY [Mycoplasma
           pneumoniae FH]
          Length = 348

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 92/323 (28%), Positives = 166/323 (51%), Gaps = 8/323 (2%)

Query: 5   KVASESLSWI----RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           + A +  S+     +   +G   ++      I  + ++   +++  +E L + L+  DIG
Sbjct: 22  QQAVQEKSFFQANQKSYYQGLNKSANSFANTINKLAANYVTVNEQFQESLFEELVLLDIG 81

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFNWDF-SHRPHVILV 116
              A KI + ++ +   + VS  +++    V +LI   +       +    +++ +V L 
Sbjct: 82  YHAATKICDAIVQELKLQRVSDPQLIQEIIVDKLIVYYIQDKLFETDLTVEANKTNVYLF 141

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNGVGKTT + KL+ +++    +V++ AGDTFR+ A+ QL  WA R   D V      
Sbjct: 142 VGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAVAQLAEWAQRIGCDIVLPNPKE 201

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           +  A+ +   +Q    + D ++ DT+GRL N + LM  + K+ ++++++    P   L V
Sbjct: 202 ETPAVIFRGVQQGIQNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQKVSSAKPQETLLV 261

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LD TTGQ+ L Q ++F+     TG+I+TKMD +++GG ++ I     +PV  +G GE   
Sbjct: 262 LDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGFGETTA 321

Query: 297 DLEPFVAKDFSAVITGCLDYGEE 319
           DL  F  + +   +T  L    E
Sbjct: 322 DLAAFDLEQYVLGLTKNLSLNHE 344


>gi|189219672|ref|YP_001940313.1| Signal recognition particle GTPase FtsY [Methylacidiphilum
           infernorum V4]
 gi|189186530|gb|ACD83715.1| Signal recognition particle GTPase FtsY [Methylacidiphilum
           infernorum V4]
          Length = 281

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 109/289 (37%), Positives = 162/289 (56%), Gaps = 16/289 (5%)

Query: 23  STSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL-LTKRYAK-DV 79
           S    L     +I+    +LD    E L   L+ SD+G+ ++QK+   L   K   K ++
Sbjct: 2   SFWRNLVGKFANIVGPKEQLD---WEAL---LVESDLGINLSQKLYALLDKEKLLGKTEL 55

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           + +R+  ++  ++    +PL          +P VIL+VGVNG GKTT   KL+ +    G
Sbjct: 56  AEKRIKKELLNILQDRKLPL-------PVGKPGVILLVGVNGGGKTTSAAKLAYRFKGEG 108

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            KV LAA DTFR+AAI+QLKIWAD+     V  + G+DAA++A+ +F QA   + D LI+
Sbjct: 109 KKVFLAACDTFRAAAIEQLKIWADKLEVPVVLGKEGADAASVAFRSFGQALDAQADYLIV 168

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGR  N   LM  +GK+ R L+++    P  +L V+D T+G N L Q   F+   G  
Sbjct: 169 DTAGRQANKKNLMMELGKIKRTLEKVSGQIPLFILLVVDGTSGSNVLVQAREFNEALGLA 228

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           G+I+TK+D +A+GG +  +     IP YFLG GE ++ LE F  + F  
Sbjct: 229 GMIVTKLDSSAKGGMVAAVKYEVGIPTYFLGRGETLDSLEEFNPEKFVE 277


>gi|12045153|ref|NP_072964.1| signal recognition particle-docking protein FtsY [Mycoplasma
           genitalium G37]
 gi|255660341|ref|ZP_05405750.1| signal recognition particle-docking protein FtsY [Mycoplasma
           genitalium G37]
 gi|1346049|sp|P47539|FTSY_MYCGE RecName: Full=Cell division protein ftsY homolog
 gi|1045995|gb|AAC71519.1| signal recognition particle-docking protein FtsY [Mycoplasma
           genitalium G37]
 gi|166078691|gb|ABY79309.1| signal recognition particle-docking protein FtsY [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 346

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 91/313 (29%), Positives = 161/313 (51%), Gaps = 12/313 (3%)

Query: 5   KVASESLSWI----RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIG 59
           K   E  S      +   +G   ++    + I ++      +D+  +E L + L+  D+G
Sbjct: 22  KEEVEKQSLFQTNNKTYYQGLKKSATTFAKTINELSKRYVNVDEQFKENLFEGLVLLDVG 81

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM--PLSKPFNWDFSHRPH---VI 114
              A KI + ++ +     ++  +++ ++  +I ++++     K F+ D   +P+   V 
Sbjct: 82  YHAANKICDAIIEQIKLNRITDFQLIKEL--IIDQIIVYYIQDKLFDTDLIVKPNFTNVY 139

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L VGVNGVGKTT + K++        +V+L AGDTFR+ AI+QL  WA   + D V    
Sbjct: 140 LFVGVNGVGKTTTLAKIADFFIKQNKRVLLVAGDTFRAGAIEQLNQWAKLLNCDIVLPNP 199

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
                A+ +   K+    K D ++ DT+GRL N   LM  + K+ ++++++    P   L
Sbjct: 200 KEQTPAVIFRGVKKGIDDKYDFVLCDTSGRLQNKLNLMNELQKIYQIIQKVSGSEPSETL 259

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLD T GQ  L Q ++F+  +  TG+++TKMDG+A+GG ++ I     +PV  +G GE 
Sbjct: 260 LVLDGTVGQTGLSQAKVFNEFSKLTGIVLTKMDGSAKGGIILAIKDMFNLPVKLIGFGEK 319

Query: 295 INDLEPFVAKDFS 307
            +DL  F  + + 
Sbjct: 320 TSDLAIFDLEKYV 332


>gi|206895825|ref|YP_002247046.1| signal recognition particle protein [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738442|gb|ACI17520.1| signal recognition particle protein [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 434

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 134/303 (44%), Gaps = 16/303 (5%)

Query: 17  LTKGFASTSLKLKEGI--TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           + +G A     +        ++    +D    ++L  LLI +D+ + V  ++VE L  K 
Sbjct: 1   MFEGLAKRIQNVFAPFGSKGLLKQEDIDQ-FLKDLRWLLIEADVSLPVVNELVERLREKL 59

Query: 75  YAKD--VSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +   VS Q  L   V E +  +L    +P   +       +L  G+ G GKTT   KL
Sbjct: 60  KPQTGIVSPQDYLLKTVYEELTALLGSY-RPLKVNPRGISLYVL-AGLQGSGKTTTAAKL 117

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              +   G  V+L A D +R A  +QL++ A      F              ++F   + 
Sbjct: 118 GYFLKRNGKSVVLGAADPYRPAGAEQLRVLASENGLYFESFVENGKVDIAKIQSF--MKK 175

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DVLI+DTAGRLH  + ++  +  + + L       P  VL V+DA  GQ A    + 
Sbjct: 176 SLHDVLILDTAGRLHVETDMLQELSMINKQLN------PQEVLLVVDAMLGQEAANIAKS 229

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F   A  +G+I+ K DG   GG  + +     +P+ F+G GE I D EPF   + +A+I 
Sbjct: 230 FKEAAPVSGVILAKADGDELGGAALSVAYVSGVPILFMGTGEHIRDFEPFDPNETAAMIL 289

Query: 312 GCL 314
           G  
Sbjct: 290 GIG 292


>gi|221091104|ref|XP_002166798.1| PREDICTED: similar to F21D5.7 [Hydra magnipapillata]
          Length = 199

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 92/197 (46%), Positives = 131/197 (66%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +VVGVNGVGKTT IGKL+ + +  G KV+L A DTFR+AA+DQLK+W +R     V   +
Sbjct: 1   MVVGVNGVGKTTTIGKLAHQFNKRGKKVVLGAADTFRAAAVDQLKLWGERVGVTVVDHGM 60

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            +D +++A++A K+      D++IIDTAGRLH    LM  +GK+ RV+++  P APH V+
Sbjct: 61  NTDPSSVAFDAVKKGMELSADIIIIDTAGRLHTKVNLMNELGKIKRVVQKFLPEAPHEVM 120

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VLD +TGQNA+ Q   F  V   + L +TK+DGTA+GG +I I    KIPV ++GVGE 
Sbjct: 121 LVLDGSTGQNAVIQAREFTKVTEISSLAITKLDGTAKGGVVIGISDEFKIPVKYIGVGEK 180

Query: 295 INDLEPFVAKDFSAVIT 311
           ++DL+ F   +F   + 
Sbjct: 181 MDDLQVFNKMEFVDSLF 197


>gi|326330603|ref|ZP_08196908.1| signal recognition particle-docking protein FtsY [Nocardioidaceae
           bacterium Broad-1]
 gi|325951593|gb|EGD43628.1| signal recognition particle-docking protein FtsY [Nocardioidaceae
           bacterium Broad-1]
          Length = 384

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 114/309 (36%), Positives = 178/309 (57%), Gaps = 4/309 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S + +L +  A  S  L  G+ +++S+ +LD+   E +EDLL+ +DIGVA  Q
Sbjct: 79  EKPESTASRLVRLRQRLAG-SNALGRGLLNLLSTDQLDEDTWESIEDLLLTADIGVAPTQ 137

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVG 123
           ++VE L T+   +            ELI  +   + +      +   P V+L+VGVNG G
Sbjct: 138 ELVEGLRTRLRVEGGKADPKAALRDELIKLVDPGMDRRLQVSGADGAPGVVLMVGVNGTG 197

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT  GKL++ +     KV+L A DTFR+AA +QL  W +R   + V    G+D A++A+
Sbjct: 198 KTTTTGKLARILVSEDRKVVLGAADTFRAAAAEQLTTWGERVGVEVVRGPEGTDPASVAF 257

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           ++ K+     VD +I+DTAGRL N + LM  +GK+ RV+++  P     VL VLDATTGQ
Sbjct: 258 DSVKEGLDTGVDTVIVDTAGRLQNKAGLMDELGKVKRVIEKQTPVT--EVLLVLDATTGQ 315

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
           N L Q  +F      TG+++TK+DG+A+GG ++ +     +PV  +G+GEG +DL PF  
Sbjct: 316 NGLIQARVFSEAVAVTGIVLTKLDGSAKGGIVVAVQRELGVPVKLVGLGEGPDDLTPFTP 375

Query: 304 KDFSAVITG 312
           + F   + G
Sbjct: 376 EAFVDALLG 384


>gi|68536275|ref|YP_250980.1| signal recognition particle receptor [Corynebacterium jeikeium
           K411]
 gi|68263874|emb|CAI37362.1| signal recognition particle receptor [Corynebacterium jeikeium
           K411]
          Length = 493

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 177/315 (56%), Gaps = 12/315 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +++A      + KL    + +   +  G+  I+S+  LD+   EE+ED L+ +D+G    
Sbjct: 185 EEIA-PVQGRLGKLRGRMSKSQNVIGRGVLGILSAGDLDEDAWEEIEDTLLMADLGTPTT 243

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVV 117
            K+V++L  +     VS +    +   ++ + L+   KP          +  +P VI+VV
Sbjct: 244 MKVVDDLRERIAINGVSSEE---EARGMLREALIDACKPDMDRSIKAMPYEGKPAVIMVV 300

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNG GKTT  GKLS+ +   G KV+L A DTFR+AA DQL+ W  R  A+ V    G+D
Sbjct: 301 GVNGTGKTTTTGKLSRVLIGMGHKVLLGAADTFRAAAADQLETWGRRVGAETVRGAEGAD 360

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A++A  +     VDV+++DTAGRLH +  LM  +GK+ RV+++        VL VL
Sbjct: 361 PASVAFDAVAKGIDAGVDVVLVDTAGRLHTSVGLMDQLGKVKRVVEKKAK--VDEVLLVL 418

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DAT GQN L Q   F  V   +G+++TK+DGTA+GG +  +     +PV  +G+GEG +D
Sbjct: 419 DATVGQNGLMQARTFREVVDISGVVLTKLDGTAKGGIVFQVQEELGVPVKMVGLGEGADD 478

Query: 298 LEPFVAKDFSAVITG 312
           L PF  + F   + G
Sbjct: 479 LAPFEVESFVDALLG 493


>gi|88604250|ref|YP_504428.1| signal recognition particle-docking protein FtsY [Methanospirillum
           hungatei JF-1]
 gi|88189712|gb|ABD42709.1| signal recognition particle-docking protein FtsY [Methanospirillum
           hungatei JF-1]
          Length = 353

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 152/307 (49%), Gaps = 16/307 (5%)

Query: 15  RKLTKGFASTSLKLKEGITD---IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            ++ K     + K+   + D   IIS + ++D + +ELE  L+ SD+  +V + I+  + 
Sbjct: 52  EQVKKASPKITDKIVSFVRDREFIISEKDVND-ILDELEMGLLESDVAFSVTEAILARIK 110

Query: 72  TKRYAKDVSVQRVL-YDVSELIHKMLMPLSKP-----FNWDFSHRPHVILVVGVNGVGKT 125
                    +   +   V   +   L+ +               RP  IL  GVNG GKT
Sbjct: 111 ADLSGSKRKIGTSVDSIVRNALSDALLGVLGEGVDICAFIREHERPVKILFTGVNGTGKT 170

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T I K+++ +   G  V+L AGDTFR+ AI+Q+ +  +R     +  + GSD  A+ ++ 
Sbjct: 171 TSIAKVTRFLQKNGFSVVLGAGDTFRAGAIEQIDVHGERLGVKVIQHQEGSDPTAVLFDT 230

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + A+A K+DV++ DTAGR HN + LM  + K+ RV+       P  ++ V +A  G +A
Sbjct: 231 VEYARAHKIDVVLGDTAGRFHNRANLMNQLAKIRRVIN------PDLIVYVDEAVAGNDA 284

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + + E F    G   +++TK+D   +GG  I +      P+ F+G G+G +D+  F  + 
Sbjct: 285 VIRAEEFAKSVGMDAIMLTKVDMDPKGGAAISVAYAVGKPLLFIGTGQGYDDVMAFNPRL 344

Query: 306 FSAVITG 312
             A + G
Sbjct: 345 VVADLLG 351


>gi|239944607|ref|ZP_04696544.1| putative signal recognition particle-docking protein FtsY
           [Streptomyces roseosporus NRRL 15998]
 gi|239991070|ref|ZP_04711734.1| putative signal recognition particle-docking protein FtsY
           [Streptomyces roseosporus NRRL 11379]
          Length = 404

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 177/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 95  EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 154

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNG 121
           ++VE L  +           L   + E +  +L P    +      +  P V++VVGVNG
Sbjct: 155 ELVERLRERVRVLGTRTPEELRTLLREELITLLGPDFDREVKTEGGAETPGVVMVVGVNG 214

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 215 TGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 274

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 275 AYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGP--LDEVLLVLDATT 332

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 333 GQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDDLAPF 392

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 393 EPGAFVDALIG 403


>gi|291448070|ref|ZP_06587460.1| signal recognition particle receptor FtsY [Streptomyces roseosporus
           NRRL 15998]
 gi|291351017|gb|EFE77921.1| signal recognition particle receptor FtsY [Streptomyces roseosporus
           NRRL 15998]
          Length = 411

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 177/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 102 EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 161

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNG 121
           ++VE L  +           L   + E +  +L P    +      +  P V++VVGVNG
Sbjct: 162 ELVERLRERVRVLGTRTPEELRTLLREELITLLGPDFDREVKTEGGAETPGVVMVVGVNG 221

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 222 TGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 281

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 282 AYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGP--LDEVLLVLDATT 339

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 340 GQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDDLAPF 399

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 400 EPGAFVDALIG 410


>gi|294463860|gb|ADE77453.1| unknown [Picea sitchensis]
          Length = 199

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 91/198 (45%), Positives = 134/198 (67%), Gaps = 1/198 (0%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE- 173
           ++VGVNG GKTT IGKL+ ++ + G+KV++AAGDTFR+AA DQL++WA RT ++ V  E 
Sbjct: 1   MIVGVNGGGKTTSIGKLAYRLKNEGIKVLMAAGDTFRAAASDQLEVWAKRTKSEIVIGEG 60

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                A++  +A ++A+ +  DV++ DT+GRLH +  LM  +    R + ++ P AP+ V
Sbjct: 61  EKVKPASVLSQAVRRAKEENFDVVLCDTSGRLHTDYALMEELIACKRAITKVLPSAPNEV 120

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLD TTG N L Q   F+ V G TG I+TK+DG+ARGG ++ +V    IPV F+G+GE
Sbjct: 121 LLVLDGTTGLNMLPQAREFNEVVGVTGFILTKLDGSARGGCVVSVVDELAIPVKFVGIGE 180

Query: 294 GINDLEPFVAKDFSAVIT 311
            ++DL+PF A+ F   I 
Sbjct: 181 QLDDLQPFDAEAFVNAIF 198


>gi|13357698|ref|NP_077972.1| SRP family GTP-binding protein [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170762333|ref|YP_001752224.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|171920430|ref|ZP_02931745.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|183508691|ref|ZP_02689930.2| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|186701943|ref|ZP_02554397.2| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
 gi|11279276|pir||D82930 SRP family of GTP-binding proteins, cell division protein UU141
           [imported] - Ureaplasma urealyticum
 gi|6899100|gb|AAF30547.1|AE002114_14 SRP family of GTP-binding proteins - cell division protein
           [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827910|gb|ACA33172.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|171902878|gb|EDT49167.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|182675613|gb|EDT87518.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|186700694|gb|EDU18976.1| signal recognition particle-docking protein FtsY [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
          Length = 351

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 168/309 (54%), Gaps = 12/309 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           I K  +G   +S  L + I ++ +    +D+   E LE++LI  D+G     KI+E +  
Sbjct: 41  INKFNEGLRKSSSALTDAINELAVKYIDIDERWYEHLEEVLISYDVGYVATNKIIESIRN 100

Query: 73  KRYAKDVSVQRVLYDVSELIHKML------MPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +   + V+   ++  +  +I K+         ++   N   +    V++V     VGKTT
Sbjct: 101 EMIYQKVNDPDLIKSI--IIDKIFIYYIQDTEINTAINLKENQTNVVLVVGVNG-VGKTT 157

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEA 185
            I K++KK  D   KV+L AGDTFR+ A++QLK+WA R   D  + ++ G D A++ Y  
Sbjct: 158 SIAKITKKFIDENKKVLLVAGDTFRAGAVEQLKVWAQRLGVDIELPNKEGQDPASVIYAG 217

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K+   +K D++I DT+GRL N   LM  + K+  V+ + D +APH  L VLDAT GQ+ 
Sbjct: 218 VKKGYEQKYDLVICDTSGRLQNKINLMNELKKIHDVIHKFDEYAPHETLLVLDATQGQSG 277

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q + F+ V   +G+I+TKMD T+RGG ++ I     IPV  +G+GE + DL  F  + 
Sbjct: 278 INQAKAFNEVTKISGIILTKMDSTSRGGIVLAIKDAFNIPVKLIGLGEKLEDLSVFDLEM 337

Query: 306 FSAVI-TGC 313
           +   I  G 
Sbjct: 338 YVDSIVLGM 346


>gi|194246474|ref|YP_002004113.1| Signal recognition particle, subunit FFH/SRP54 [Candidatus
           Phytoplasma mali]
 gi|193806831|emb|CAP18260.1| Signal recognition particle, subunit FFH/SRP54 [Candidatus
           Phytoplasma mali]
          Length = 456

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 136/280 (48%), Gaps = 15/280 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLM 97
           + + EE+   L+++D+   V ++   ++ +K   ++V       Q+V+  +++ + ++L 
Sbjct: 27  EEIMEEIRLSLLQADVNYEVVEEFNSKVKSKALGQEVLKSLNPSQQVIKILNDTLVEVLN 86

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS--KKMSDAGLKVMLAAGDTFRSAAI 155
             +   N+  ++     +++G+ G GKTT  GKL+          KV+L A D +R  AI
Sbjct: 87  SKNIHLNFANNNEITTFMLIGLQGSGKTTTAGKLAILAHKKFQ-KKVLLIACDIYRPGAI 145

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+   +R + +    +  +    +  E  K A   + DV+IIDTAG L  N  ++  +
Sbjct: 146 EQLQDIGNRININVFFKKDVTVEN-IISEGLKYASLNQYDVVIIDTAGTLSINKAMIQEL 204

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +  +        P  +  V+D   G+      + F+     TG+I+TKMD   +GG +
Sbjct: 205 KMIKNLSN------PSEIFLVVDVLFGKEITNVAKTFNEKLQVTGVILTKMDADVKGGAV 258

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + +  T  +P+  +   E INDLE F AK  ++ + G  D
Sbjct: 259 LSVKATTNLPIKLMSSSEKINDLEFFDAKRMASRLLGMGD 298


>gi|154151418|ref|YP_001405036.1| signal recognition particle-docking protein FtsY [Candidatus
           Methanoregula boonei 6A8]
 gi|153999970|gb|ABS56393.1| signal recognition particle-docking protein FtsY [Methanoregula
           boonei 6A8]
          Length = 344

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 140/284 (49%), Gaps = 13/284 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR-----VLYDVS 89
           ++S + + D    ELE  L+ SD+ + V   ++ ++      K   +       V+  + 
Sbjct: 65  VVSEKDIADA-LSELEMTLLESDVALPVTDALIADIRAGLVGKHRKIGESVDSLVVRSLK 123

Query: 90  ELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             + K+L      P       RP  IL  GVNG GKTT + K+   +   G  V++ AGD
Sbjct: 124 SALLKVLGQGFDLPAYIRSHERPVKILFTGVNGTGKTTTVAKIGAYLKKEGFSVVIGAGD 183

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+ AI+Q+ + A+R     +  + G+D +A+ ++  + A A K DV++ DTAGR H  
Sbjct: 184 TFRAGAIEQIGVHAERLGIKVIEHQTGADPSAVLFDTVQYAIAHKTDVVLADTAGRFHTK 243

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           + LM+ + K+ RV+K      P  ++ V +A  G +A+ +   F    G   +++TK D 
Sbjct: 244 ANLMSQLEKIRRVMK------PDLIVYVDEAVAGNDAVVRAAEFDKTVGADAIVLTKADM 297

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            +RGG  I I  T   P+ FLG G+   D+ PF        + G
Sbjct: 298 DSRGGAAISIAHTIGKPLLFLGTGQAYEDIMPFEPGAVVEELLG 341


>gi|326776316|ref|ZP_08235581.1| signal recognition particle-docking protein FtsY [Streptomyces cf.
           griseus XylebKG-1]
 gi|326656649|gb|EGE41495.1| signal recognition particle-docking protein FtsY [Streptomyces cf.
           griseus XylebKG-1]
          Length = 403

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 177/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 94  EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 153

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNG 121
           ++VE L  +           L   + E +  +L P    +      +  P V++VVGVNG
Sbjct: 154 ELVERLRERVRVLGTRTPEELRTLLREELITLLGPDFDREVKTEGGAETPGVVMVVGVNG 213

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 214 TGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 273

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++  P     +L VLDATT
Sbjct: 274 AYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGP--LDEILLVLDATT 331

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 332 GQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPF 391

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 392 EPGAFVDALIG 402


>gi|172040474|ref|YP_001800188.1| signal recognition particle receptor [Corynebacterium urealyticum
           DSM 7109]
 gi|171851778|emb|CAQ04754.1| signal recognition particle receptor [Corynebacterium urealyticum
           DSM 7109]
          Length = 554

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 114/316 (36%), Positives = 179/316 (56%), Gaps = 12/316 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            Q++A      + KL    A +   +  G+  I+S+  LD+   EE+ED L+ +D+G   
Sbjct: 245 TQEIA-PVEGRLGKLRGRMAKSQNVIGRGVLGILSAGDLDEDAWEEIEDTLLMADLGADT 303

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILV 116
             K+V+ L  +  ++ V  +     +   + ++L+   KP          +  +P VI+V
Sbjct: 304 TMKVVDSLRERIASQGVESEEQARAM---LREVLIEAGKPELDRSIKAMPYKGKPGVIMV 360

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT  GKLS+ +   G  V+L A DTFR+AA DQL+ W +R  A  V  + G+
Sbjct: 361 VGVNGTGKTTTTGKLSRVLVGMGKHVVLGAADTFRAAAADQLETWGNRVGARTVRGKEGA 420

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A+++  Q   ++ DV+++DTAGRLH +  LM  +GK+ RV+++        VL V
Sbjct: 421 DPASVAFDSVSQGMDEQADVVLVDTAGRLHTSVGLMDQLGKVKRVVEKR--ARVDEVLLV 478

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +
Sbjct: 479 LDATVGQNGLMQARVFRDVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGAD 538

Query: 297 DLEPFVAKDFSAVITG 312
           DL PF  + F   + G
Sbjct: 539 DLAPFEVESFVDALLG 554


>gi|221487598|gb|EEE25830.1| signal recognition particle 54 kda protein, putative [Toxoplasma
           gondii GT1]
          Length = 714

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 121/243 (49%), Gaps = 8/243 (3%)

Query: 68  EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E+ T+  A  V+ ++++   V   I  ML P  +P+        +VI+ VG+ G GKTT
Sbjct: 130 QEINTRAAAVGVNSRKIIQKCVISEIVAMLTPARQPY-VPRKGATNVIMFVGLQGSGKTT 188

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              K +      G +V L   DTFR+ A DQLK  A +    F  S   +D   +A E  
Sbjct: 189 TCTKYAHYYQRKGWRVALVCADTFRAGAFDQLKQNATKVRIPFYGSYTEADPVKIAEEGV 248

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +Q + +K D++I+DT+GR    + L      M +V + +DP     V+ V+D+  GQ   
Sbjct: 249 EQFRREKYDMIIVDTSGRHKQEAALFDE---MKQVAEAVDP---DDVVFVMDSHIGQACF 302

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q + F        +I+TK+DG A+GGG +  V     P+ FLG GE  +D E F A  F
Sbjct: 303 DQAQAFSESVDVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDFEAFEANSF 362

Query: 307 SAV 309
            + 
Sbjct: 363 VSR 365



 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 21 FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLT 72
           A    ++   +  + ++  +D+ V +E    +   L+++D+ V V Q+    +  
Sbjct: 3  LAELGEQISGALRRLHTATVVDEQVVQECVMAVCRALLQADVHVRVVQQFKASVTA 58


>gi|11499644|ref|NP_070886.1| signal recognition particle receptor (dpa) [Archaeoglobus fulgidus
           DSM 4304]
 gi|2648469|gb|AAB89189.1| signal recognition particle receptor (dpa) [Archaeoglobus fulgidus
           DSM 4304]
          Length = 340

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/266 (34%), Positives = 138/266 (51%), Gaps = 16/266 (6%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFS------ 108
           SD+   V   I E L ++   +   +   L D V E +  ++  +     +DF       
Sbjct: 80  SDVAFEVVDAISEALKSRLVGRRKKLTEKLSDIVMEELRSIIFEILDENRFDFDEFIKEK 139

Query: 109 ---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               +P VI  VGVNG GKTT I K++ ++   G  V+LAAGDTFR+ AI+QL+  A R 
Sbjct: 140 LKEKKPVVIAFVGVNGTGKTTTIAKVANRLIKQGYSVVLAAGDTFRAGAIEQLEEHAKRL 199

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +  + GSD AA+ Y+A K A++K +DV++ DTAGR+H    L+  + K+ RV K  
Sbjct: 200 GVKLIKHKHGSDPAAVIYDAIKHAESKGIDVVLADTAGRMHTKKNLLDQLEKIKRVTK-- 257

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  ++ V ++  G +A+ +  MF    G  G I+TK+D   +GG  I I    K P
Sbjct: 258 ----PDLIIFVDESIAGNDAVERARMFAETVGIDGSILTKLDADPKGGSAISISYVTKKP 313

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           V F GVG+  +DL  F +K     I 
Sbjct: 314 VLFFGVGQEYDDLVKFDSKWLVERIF 339


>gi|222824209|ref|YP_002575783.1| signal recognition particle-docking GTPase FtsY [Campylobacter lari
           RM2100]
 gi|222539431|gb|ACM64532.1| signal recognition particle-docking GTPase FtsY [Campylobacter lari
           RM2100]
          Length = 288

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 157/302 (51%), Gaps = 30/302 (9%)

Query: 17  LTKGFAST--SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL---- 70
           L  G   T  S+ L +    +I+   L++ +          +D+   + ++I+  L    
Sbjct: 5   LKDGLKKTLESINLIKADKKVITKELLEEILL--------EADVAYEIVEEIIYYLPPND 56

Query: 71  -LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            + K   + V     +YD  E                 + +P V L++GVNGVGKTT I 
Sbjct: 57  EVKKADLERVMGTYFIYDKPEF---------------ANAKPFVDLILGVNGVGKTTSIA 101

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++    + G KV+L A DTFR+ AI+QLK+WA +   D + +  G D +A+AY+A  +A
Sbjct: 102 KIAHLYKENGEKVVLGACDTFRAGAIEQLKLWAQKLEIDIIATSQGHDPSAVAYDAISKA 161

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            AK  D +I+DTAGRL N   L   + K++R+  +    APH  + VLD T G   + Q 
Sbjct: 162 LAKNYDRVILDTAGRLQNQKNLANELEKIVRISNKAMQGAPHRKILVLDGTQGVAGILQA 221

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+ +    G+I+TK+DGTA+GG L  I    ++P++++GVGE +  +  F  +++   
Sbjct: 222 KAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQLEQIYEFNPQEYVKA 281

Query: 310 IT 311
           + 
Sbjct: 282 LV 283


>gi|296127634|ref|YP_003634886.1| signal recognition particle-docking protein FtsY [Brachyspira
           murdochii DSM 12563]
 gi|296019450|gb|ADG72687.1| signal recognition particle-docking protein FtsY [Brachyspira
           murdochii DSM 12563]
          Length = 319

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 154/288 (53%), Gaps = 5/288 (1%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           TS K K  ++ + ++  ++D     LE+ LI +D GV   + I+ +L      +++    
Sbjct: 36  TSAKSKFSLSSLFNTSSINDEFFASLENTLITADAGVETTKDIISKLREAIEKENIKEP- 94

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
              +  + + ++L+        +   + +++ +VGVNGVGKTT I KL+  +     KV+
Sbjct: 95  --SEAKKYLREILISKFISKKIELKDK-NILFIVGVNGVGKTTSIAKLANILK-KDHKVI 150

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           LAA DTFR+AAI+QL+ WA+R S   V  +   D A++ + A  +A+A   D++I+DTAG
Sbjct: 151 LAAADTFRAAAIEQLEEWANRLSVTIVKGQQAGDPASVLFSALDKAKAANADIVIVDTAG 210

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R HN   L+  + KM ++            + VLDA  G N + Q ++F       G I+
Sbjct: 211 RFHNQENLVRQLEKMKKIATERFSEFNFIPILVLDANVGHNGIEQAKVFTNALNIQGAIV 270

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +K+D TA+GG  I I     +P+Y+ G GE ++D + F A+ F   I 
Sbjct: 271 SKLDSTAKGGVAISIAHYLSLPIYYGGFGEKVDDFKEFDAESFVDSIL 318


>gi|134045929|ref|YP_001097415.1| signal recognition particle-docking protein FtsY [Methanococcus
           maripaludis C5]
 gi|132663554|gb|ABO35200.1| signal recognition particle-docking protein FtsY [Methanococcus
           maripaludis C5]
          Length = 383

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 89/323 (27%), Positives = 157/323 (48%), Gaps = 30/323 (9%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIR----SDIGVAV 62
            E + +  KL          + + I  ++     L +   E++ + +      +D+   V
Sbjct: 67  KEKVGFFDKL---------SITKSIKKVLGQDVVLTESDIEDILEEMEMELFEADVAFDV 117

Query: 63  AQKIVEELLTKRYA---------KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PH 112
            +KI+  L  +            +++++  +   + E++ +  + +    +   S   P 
Sbjct: 118 VEKIIGSLKNQLVGLKISAKDNPEEITINALKKSIKEILSQEKIDVFGLIDEKKSKGEPA 177

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V+L VG+NG GKTT I KL+  + + G   ++AAGDTFR+ AI+QL+     T    +  
Sbjct: 178 VLLFVGINGTGKTTSISKLAYILKERGYSAVMAAGDTFRAGAIEQLEEHGKNTDIKVIKH 237

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           + G+D+AA+ Y+A   A+AK ++V++ DTAGR   N  LM  I K++RV K      P  
Sbjct: 238 QKGADSAAVIYDAINHAKAKGLNVVLADTAGRQTTNINLMDEIKKVVRVTK------PDL 291

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           ++ V D+  G +A+ Q E F+      G I+TK D  A+GG  + I      P+ F+G+G
Sbjct: 292 IIFVGDSLAGNDAISQAEEFNNAINIDGAILTKTDADAKGGAALSIAYAIGKPILFMGIG 351

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           +  +DL+ F  K     +    D
Sbjct: 352 QRYSDLQEFDVKWMVKKLFSEED 374


>gi|123974885|ref|XP_001314049.1| SRP54-type protein [Trichomonas vaginalis G3]
 gi|121896072|gb|EAY01234.1| SRP54-type protein, putative [Trichomonas vaginalis G3]
          Length = 482

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/303 (25%), Positives = 141/303 (46%), Gaps = 15/303 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 K+  G++++  + ++DD   +    ++ + L  +D+   +  +  ++L++ + +
Sbjct: 3   LQDLGEKILAGLSNLGKASKVDDEFVKQYAKDMTNALKAADVSGPIVLQFFKQLISIKVS 62

Query: 77  ---KDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
                VS+++ +  +   L+  ++ P    +      +P+V + VG+ G GKTT   KL 
Sbjct: 63  DLPPGVSIKKHIERETLRLLVDLVDPKVDAYK-PTKGKPNVYMFVGLQGSGKTTTCTKLG 121

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G KV L   DTFR+ A +QL   A      +    +  D  ++A    ++ + +
Sbjct: 122 LYYKKRGFKVGLVGADTFRAGAREQLMQNAQSVGLPYYVDLVNIDPISVAISGVEKFKRE 181

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           + D++I+DT+G+    + L   + +M   +       P  ++ VLDA  GQ+A  Q   F
Sbjct: 182 RYDMIIVDTSGKHAQENALFQEMQEMQDAIN------PDEIIFVLDANIGQSAFDQATAF 235

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                   +IMTK+D   +GGG I  V   K P+ F G GE ++ LE F    F A I G
Sbjct: 236 SKAVDIGSIIMTKLDSGTKGGGAISAVAATKCPIAFYGTGEEMDQLEIFDPNSFIANILG 295

Query: 313 CLD 315
             D
Sbjct: 296 YAD 298


>gi|315586568|gb|ADU40949.1| cell division protein FtsY [Helicobacter pylori 35A]
          Length = 297

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 95/266 (35%), Positives = 149/266 (56%), Gaps = 6/266 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 31  KEELEEILIGFDIQYDLIESLLNHLGDSITPKQLEVALLRFVRGESYYD------KTRLK 84

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + RP V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 85  TITTRPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +LG+GE  +DL  F  + F   + 
Sbjct: 265 ILYLGMGEKEDDLIAFDEERFIEDLV 290


>gi|182435691|ref|YP_001823410.1| putative signal recognition particle-docking protein FtsY
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178464207|dbj|BAG18727.1| putative signal recognition particle-docking protein FtsY
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 402

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 177/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 93  EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 152

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNG 121
           ++VE L  +           L   + E +  +L P    +      +  P V++VVGVNG
Sbjct: 153 ELVERLRERVRVLGTRTPEELRTLLREELITLLGPDFDREVKTEGGAETPGVVMVVGVNG 212

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 213 TGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 272

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++  P     +L VLDATT
Sbjct: 273 AYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGP--LDEILLVLDATT 330

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 331 GQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAPF 390

Query: 302 VAKDFSAVITG 312
               F   + G
Sbjct: 391 EPGAFVDALIG 401


>gi|45358246|ref|NP_987803.1| signal recognition particle-docking protein FtsY [Methanococcus
           maripaludis S2]
 gi|44921003|emb|CAF30239.1| signal recognition particle receptor SRalpha [Methanococcus
           maripaludis S2]
          Length = 383

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/321 (29%), Positives = 155/321 (48%), Gaps = 34/321 (10%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR-------SDIGV 60
            E + ++ KL          + + I  ++    +     +++ED+L         +D+  
Sbjct: 67  KEKIGFLDKL---------AVTKSIKKVLGKDVI--LTEDDIEDVLEEMEMELFEADVAF 115

Query: 61  AVAQKIVEELLT-----KRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-----NWDFSHR 110
            V +KI+E L       K  AKD   +  +  + + I  +L                +  
Sbjct: 116 DVVEKIIESLKNQLVGLKISAKDDPEEITINALKKSIKGILSQEKIDVFNLIDEKKANGE 175

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V+L VG+NG GKTT I KL+  + + G   ++AAGDTFR+ AI+QL+     T    +
Sbjct: 176 PAVLLFVGINGTGKTTSISKLAYILKEKGYSAVMAAGDTFRAGAIEQLEEHGKNTGIKVI 235

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G+D+AA+ Y+A   A+AK ++V++ DTAGR   N  LM  I K++RV K      P
Sbjct: 236 KHQKGADSAAVIYDAISHAKAKGLNVVLADTAGRQTTNINLMDEIKKVVRVTK------P 289

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             ++ V D+  G +A+ Q E F+      G I+TK D  A+GG  + I  +   P+ F+G
Sbjct: 290 DLIIFVGDSLAGNDAISQAEEFNNTININGAILTKTDADAKGGAALSIAYSIGKPILFMG 349

Query: 291 VGEGINDLEPFVAKDFSAVIT 311
           VG+  +DL+ F        + 
Sbjct: 350 VGQRYSDLQEFDVDWMIKKLF 370


>gi|108563173|ref|YP_627489.1| signal recognition particle receptor [Helicobacter pylori HPAG1]
 gi|107836946|gb|ABF84815.1| signal recognition particle receptor [Helicobacter pylori HPAG1]
          Length = 293

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/290 (33%), Positives = 157/290 (54%), Gaps = 11/290 (3%)

Query: 27  KLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
              + I + I    + +       +EELE++LI  DI   + + +++ L      K + V
Sbjct: 3   NFFKKIVNKIKGEEIKEKKRQSVPKEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEV 62

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
             + +   E  +       K      + +P V L+VGVNG GKTT I KL+K       K
Sbjct: 63  ALLRFVRGESYYD------KTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKK 116

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            +L AGDTFR+AA+ QL++W ++ +   + ++ GSD ++LAY   + A AK +D + IDT
Sbjct: 117 TLLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDT 176

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLHN + L   + K+ R   ++   AP     +LD T G + L Q ++FH      G+
Sbjct: 177 AGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV 236

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           IMTK+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F A + 
Sbjct: 237 IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIADLV 286


>gi|290977140|ref|XP_002671296.1| predicted protein [Naegleria gruberi]
 gi|284084864|gb|EFC38552.1| predicted protein [Naegleria gruberi]
          Length = 454

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 138/304 (45%), Gaps = 34/304 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    ++   +  I S   +DD     + +E+ + L+ +D+ +    ++   +      
Sbjct: 3   LAELGSRITTALRTINSQAVIDDAAISELLKEIGNSLMAADVNIQQVIQLRNGIKAGLDF 62

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           ++  K ++ +  +  V          + +   ++          +G+ G GKTT   K +
Sbjct: 63  EKLPKGINRRNHIKAV----------VYQELFFE----------IGLQGAGKTTTCTKYA 102

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +     G +  L   DTFR+ A++QL+  A +    F   E  ++   +A +  +Q + +
Sbjct: 103 RYYQKKGFRSALVCADTFRAGALEQLRQNAAKVQIAFYGDEYETNPVKIAKDGVEQFKNE 162

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K +V+I+DT+GR      L   + ++ + +       P  V+ V+D++ GQ+   Q   F
Sbjct: 163 KYEVIIVDTSGRHMQEESLFEEMEQVSQAVN------PDEVIFVMDSSIGQSVKEQAAAF 216

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            +      +I+TK+DG A+GGG +  V   K P+ F+G GE  ++ + F A+ F + + G
Sbjct: 217 KSRVSVGSVIVTKLDGHAKGGGALSAVAATKSPITFIGTGEDFDNFQQFNAESFVSRLLG 276

Query: 313 CLDY 316
             D 
Sbjct: 277 QGDL 280


>gi|325119667|emb|CBZ55220.1| Signal recognition particle GTPase, related [Neospora caninum
           Liverpool]
          Length = 583

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 81/252 (32%), Positives = 124/252 (49%), Gaps = 8/252 (3%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           GV   +   +E+ T+  A  V+ ++++   V   I  ML P  +P+        +VI+ V
Sbjct: 122 GVGANKDTFQEINTRAAAVGVNSRKIIQKCVISEIVAMLTPARQPY-VPRKGATNVIMFV 180

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G+ G GKTT   K +      G +V L   DTFR+ A DQLK  A +    F  S   +D
Sbjct: 181 GLQGSGKTTTCTKFAHYYQRKGWRVALVCADTFRAGAFDQLKQNATKVRIPFYGSYTEAD 240

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A E  +Q + +K D++I+DT+GR    + L      M +V + +DP     V+ V+
Sbjct: 241 PVKIAEEGVEQFRKEKYDMIIVDTSGRHKQEAALFDE---MKQVAEAVDP---DDVVFVM 294

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ    Q + F        +I+TK+DG A+GGG +  V     P+ FLG GE  +D
Sbjct: 295 DSHIGQACFEQAQAFSESVDVGSVIITKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDD 354

Query: 298 LEPFVAKDFSAV 309
            E F A  F + 
Sbjct: 355 FEAFEANSFVSR 366



 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 11/115 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    ++   +  + ++  +D+ V +E    +   L+++D+ V V Q+    +      
Sbjct: 3   LAELGEQISGALRRLHTATVVDEQVVQECVMAVCRALLQADVHVRVVQQFKASVTAGINN 62

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           + +S  +     S          S       +  P         G G T    K 
Sbjct: 63  RLLSHSQAASSSSSSSASSQKASSTAGKGSAAPSPA-------TGSGGTGPAVKF 110


>gi|257052404|ref|YP_003130237.1| signal recognition particle-docking protein FtsY [Halorhabdus
           utahensis DSM 12940]
 gi|256691167|gb|ACV11504.1| signal recognition particle-docking protein FtsY [Halorhabdus
           utahensis DSM 12940]
          Length = 394

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 141/267 (52%), Gaps = 13/267 (4%)

Query: 52  LLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYD-VSELIHKML--MPLSKPFN 104
            L+ SD+ ++VA +I++     L+ +   +  S   ++ D + E ++ ++          
Sbjct: 131 ALLSSDVEMSVAGEILDGVEANLVGETRRRLQSTGNLVQDSLREALYDVISVGQFDFEER 190

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              + +P VI+  GVNGVGKTT I KL++ + D G   +LA GDT+R+ A  QL   A+ 
Sbjct: 191 IAAAEKPVVIVFTGVNGVGKTTTIAKLAQYLEDRGHSSVLANGDTYRAGANQQLGEHAEA 250

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
               ++  E G D  A+ Y+A + A+A  VDV++ DTAGRLH +  LM  + K+ R+++ 
Sbjct: 251 LDVPYISHEQGGDPTAVIYDAVEYAEANDVDVVLGDTAGRLHTSEGLMDQLSKIERIIE- 309

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                P   L V +A  GQ+A+ +   F A A   G I+TK D   +GG  I I      
Sbjct: 310 -----PDMTLFVDEAVAGQDAVTRATEFDAAAEIDGTILTKADADPQGGAAISIAHVTGK 364

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVIT 311
           P+ FLG G+G + LE F  ++    +T
Sbjct: 365 PILFLGTGQGYDHLERFDPEEVVDQLT 391


>gi|16950583|gb|AAL32277.1| signal recognition particle receptor [Arcanobacterium pyogenes]
          Length = 397

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 180/315 (57%), Gaps = 11/315 (3%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++   + S + +L    A  S  L   +  I+S   L +   EELED L+ +D+G+    
Sbjct: 85  EIPEAAGSRLERLRGRLA-ASGALGRTLLSILSRGDLSEADWEELEDTLLMADVGLDATT 143

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNW-----DFSHRPHVILVV 117
           ++++ L T+   K  +    +  +   ELI  +     +  N      D S  P  +L+V
Sbjct: 144 ELMDILRTQTKVKATTDAGEVRAILRQELIKLVGADTDRSLNLEPVIDDDSRHPAALLIV 203

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           GVNG GKTT  GKL++ +   G +++L A DTFR+AA DQL  W  R   D V S+  G+
Sbjct: 204 GVNGTGKTTTTGKLARLLVADGKRLVLGAADTFRAAAADQLSTWGARVGVDVVRSDREGA 263

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A+EA + A+    DV+I+DTAGRL N + LM  +GK+ RV+++  P     VL V
Sbjct: 264 DPASVAFEAVRVARESAADVVIVDTAGRLQNKAGLMDELGKIKRVMEKSAP--LREVLLV 321

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN + Q ++F  VAG TG+++TK+DGTA+GG +I +     +PV  +G+GEG +
Sbjct: 322 LDATTGQNGMSQAKVFAEVAGITGIVLTKLDGTAKGGIVISVQRELGVPVKLVGLGEGAD 381

Query: 297 DLEPFVAKDFSAVIT 311
           DL PF   DF   + 
Sbjct: 382 DLAPFDPTDFVDSLL 396


>gi|290559218|gb|EFD92569.1| signal recognition particle receptor [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 386

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/274 (36%), Positives = 153/274 (55%), Gaps = 14/274 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK----MLMP 98
           D +  E++ +L+ +++ ++V + I ++L  K   + VS+      ++ +I       L+ 
Sbjct: 108 DMIYSEIKTVLLENNVALSVLENIQKDLKNKLVGESVSMFGNKKYLNNVIRDSIANTLIG 167

Query: 99  LSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             K        S +P VILV+GVNG GKTT I KL K     GLK ++AAGDTFR+A+I+
Sbjct: 168 YDKEEFISKIKSKKPFVILVIGVNGAGKTTTIAKLCKLFLSKGLKPVIAAGDTFRAASIE 227

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL+I A +     +    GSD AA+A++A K A + K DV++IDTAGR   N  L+  + 
Sbjct: 228 QLEIHAKKLKVPIIKHTYGSDPAAVAFDAIKHANSAKEDVVVIDTAGRSDINKNLIEELK 287

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+ RV K      P   + + DA TG + ++Q E++    G    I++K D   +GG ++
Sbjct: 288 KVKRVSK------PDMTIFIGDALTGNDVVKQAEVYDKEIGIDANILSKADVDKKGGAVL 341

Query: 277 PIVVTHKIPVYFLGVGEGINDLEP--FVAKDFSA 308
            I    K P+ FLGVG+G +DL P  F A  FSA
Sbjct: 342 SISYITKKPILFLGVGQGSDDLIPVSFSAIAFSA 375


>gi|167043737|gb|ABZ08429.1| putative SRP54-type protein, GTPase domain protein [uncultured
           marine crenarchaeote HF4000_APKG3B16]
          Length = 441

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/304 (25%), Positives = 149/304 (49%), Gaps = 17/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYA 76
             +    L+  I  I++S  +D+ + +EL    +  L++SD+ V +  +I + + ++   
Sbjct: 2   LDNLKSSLRAAIKKIVNSSGVDEELIKELSKDVQRSLLQSDVNVKLVFEITKNIESRSLN 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +           ++  + + + K+L      F++  S + + +L++G+ G GKTTV  KL
Sbjct: 62  EKPPPGLSRKDHIVKILYDELAKLLGN-DTEFHFK-SGKINKVLLLGIQGSGKTTVASKL 119

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++ +S  G +V +   DTFR  A+ QL+   +++  +    E   D+  +     K  ++
Sbjct: 120 ARFLSKQGYRVGVIGADTFRPGALVQLRTMCEKSDVEVYGDEKNKDSPQVVKNGLKHFES 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +D+++IDTAGR      L+  + ++ +        +P   L V+D T GQ    Q E 
Sbjct: 180 SNLDIILIDTAGRHKEEKDLLDEMKQINKA------ASPDLALLVVDGTIGQQCHAQAEA 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH +    G+I+TK+D +A+GGG +         V ++G GE I+DLE F    F   + 
Sbjct: 234 FHKIVPVGGIIITKLDSSAKGGGALAASAATGAQVMYIGTGERIDDLETFSPTRFVGRLL 293

Query: 312 GCLD 315
           G  D
Sbjct: 294 GMGD 297


>gi|297619379|ref|YP_003707484.1| signal recognition particle-docking protein FtsY [Methanococcus
           voltae A3]
 gi|297378356|gb|ADI36511.1| signal recognition particle-docking protein FtsY [Methanococcus
           voltae A3]
          Length = 399

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 87/276 (31%), Positives = 143/276 (51%), Gaps = 19/276 (6%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-----LIHKMLMPLSKPF-----NW 105
           +D+     + I+E L        ++ +    ++ E      I  +L            N 
Sbjct: 127 ADVAYDTVENIIESLKESLIGLKITSEDNPEEIIETALKNSIRNILAQEKIDIEELIQNK 186

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           + +  P VI+ +G+NG GKTT I KL+ K+   G  +++AAGDTFR+ AI+QL+  A+  
Sbjct: 187 NKNGEPAVIIFLGINGTGKTTSISKLAYKLKQNGHSIVMAAGDTFRAGAIEQLEEHANNL 246

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +  + G+D+AA+ ++A + A+AKK+DV++ DTAGR   N  LM+ I K++RV K  
Sbjct: 247 EVKVIKHQKGADSAAVIFDAIQHAKAKKIDVVLADTAGRQTTNINLMSEIKKVVRVTK-- 304

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  V+ V D+  G +A+ Q E F+      G I+TK D  A+GG  + I  +   P
Sbjct: 305 ----PDLVVFVGDSLAGNDAINQAEEFNNAVNIDGAILTKTDADAKGGAALSIAHSIGKP 360

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321
           + ++GVG+  +DL+ F        +       EEK+
Sbjct: 361 ILYMGVGQRYSDLQEFDVDWMVNKLFS---ENEEKL 393


>gi|262202014|ref|YP_003273222.1| signal recognition particle-docking protein FtsY [Gordonia
           bronchialis DSM 43247]
 gi|262085361|gb|ACY21329.1| signal recognition particle-docking protein FtsY [Gordonia
           bronchialis DSM 43247]
          Length = 531

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 108/287 (37%), Positives = 167/287 (58%), Gaps = 5/287 (1%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + + +  ++ +  LD+   EE+ED L+ +D+G +    +VE L  +    +V        
Sbjct: 247 IGKSVLGLLGAGDLDEDSWEEIEDTLVMADLGSSTTAAVVERLREELATNNVRTAEQARA 306

Query: 88  VSE--LIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           + +  L+ ++   L +       + RP V+LVVGVNG GKTT  GKL++ +   G +V+L
Sbjct: 307 LLKRVLVEQLRPELDRSVKALPHAGRPAVVLVVGVNGTGKTTTTGKLARVLVADGRRVLL 366

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            A DTFR+AA DQL+ W +R  A+ V  +  +D AA+A++A  +     VDV++IDTAGR
Sbjct: 367 GAADTFRAAAADQLQTWGERVGAEVVRGKEKADPAAVAFDAVDRGIDAGVDVVMIDTAGR 426

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LH  + LM  +GK+ RV+++  P     VL VLDAT GQN L Q  +F  V   TGL++T
Sbjct: 427 LHTKTGLMDELGKVKRVVEKKAP--VDEVLLVLDATVGQNGLMQARVFAEVVDITGLVLT 484

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + 
Sbjct: 485 KLDGTAKGGIVFHVQKELGVPVKLVGLGEGADDLAPFEPEAFVEALL 531


>gi|260578974|ref|ZP_05846877.1| signal recognition particle FtsY [Corynebacterium jeikeium ATCC
           43734]
 gi|258602948|gb|EEW16222.1| signal recognition particle FtsY [Corynebacterium jeikeium ATCC
           43734]
          Length = 479

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 177/315 (56%), Gaps = 12/315 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +++A      + KL    + +   +  G+  I+S+  LD+   EE+ED L+ +D+G    
Sbjct: 171 EEIA-PVQGRLGKLRGRMSKSQNVIGRGVLGILSAGDLDEDAWEEIEDTLLMADLGTPTT 229

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVV 117
            K+V++L  +     VS +    +   ++ + L+   KP          +  +P VI+VV
Sbjct: 230 MKVVDDLRERIAVNGVSSE---AEARGMLREALIDACKPDMDRSIKAMPYEGKPAVIMVV 286

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNG GKTT  GKLS+ +   G KV+L A DTFR+AA DQL+ W  R  A+ V    G+D
Sbjct: 287 GVNGTGKTTTTGKLSRVLIGMGHKVLLGAADTFRAAAADQLETWGRRVGAETVRGAEGAD 346

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A++A  +     VDV+++DTAGRLH +  LM  +GK+ RV+++        VL VL
Sbjct: 347 PASVAFDAVAKGIDSGVDVVLVDTAGRLHTSVGLMDQLGKVKRVVEKKAK--VDEVLLVL 404

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DAT GQN L Q   F  V   +G+++TK+DGTA+GG +  +     +PV  +G+GEG +D
Sbjct: 405 DATVGQNGLMQARTFREVVDISGVVLTKLDGTAKGGIVFQVQEELGVPVKMVGLGEGADD 464

Query: 298 LEPFVAKDFSAVITG 312
           L PF  + F   + G
Sbjct: 465 LAPFEVESFVDALLG 479


>gi|261838004|gb|ACX97770.1| signal recognition particule receptor [Helicobacter pylori 51]
 gi|297379959|gb|ADI34846.1| signal recognition particle-docking protein FtsY [Helicobacter
           pylori v225d]
          Length = 297

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 94/266 (35%), Positives = 149/266 (56%), Gaps = 6/266 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 31  KEELEEILIGFDIQYDLIESLLNHLGDSITPKQLEVALLRFVRGESYYD------KTRLK 84

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 85  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +LG+GE  +DL  F  + F   + 
Sbjct: 265 ILYLGMGEKEDDLIAFDEERFIEDLV 290


>gi|300709656|ref|YP_003735470.1| signal recognition particle-docking protein FtsY [Halalkalicoccus
           jeotgali B3]
 gi|299123339|gb|ADJ13678.1| signal recognition particle-docking protein FtsY [Halalkalicoccus
           jeotgali B3]
          Length = 397

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 149/285 (52%), Gaps = 13/285 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIH 93
           I+    + +G  ++LE  L+ SD+   VAQ+IV  L  +       + + + + V + + 
Sbjct: 118 IVVDPEVIEGPLDDLEFALLESDVEFTVAQEIVANLRDELENATRGMTQTVEERVDQALR 177

Query: 94  KMLMPLSKPFNWDF------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + L+ +     +DF      + +P  ++  GVNGVGKTT I KLS+ + + G   +LA G
Sbjct: 178 EALLEVISVGQFDFDERIAAAEKPVTLIFTGVNGVGKTTSIAKLSQYLEERGYSTVLANG 237

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT+R+ A +Q++  A       +  E G D AA+ Y+A + AQA  +DV++ DTAGRLH 
Sbjct: 238 DTYRAGANEQIREHARNLDTKLISHEQGGDPAAVIYDAVEYAQAHGIDVVLGDTAGRLHT 297

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           N  LM  + K+ RV+       P   L   +A  GQ+A+++ + F+  A   G I+TK D
Sbjct: 298 NEGLMDQLEKIDRVVG------PDMTLFTDEAVAGQDAVQRAKKFNDAAEIDGAILTKAD 351

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
             A GG  I I      P+ FLG G+G +D+E F        + G
Sbjct: 352 ADANGGAAISIAYVTGKPILFLGTGQGYDDIERFDPDWLVDQLLG 396


>gi|310828472|ref|YP_003960829.1| signal recognition particle-docking protein FtsY [Eubacterium
           limosum KIST612]
 gi|308740206|gb|ADO37866.1| signal recognition particle-docking protein FtsY [Eubacterium
           limosum KIST612]
          Length = 311

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 117/310 (37%), Positives = 176/310 (56%), Gaps = 4/310 (1%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            L+   ++ +    T     + + +++    LDD   +ELE+  I SD+G+  A KI E 
Sbjct: 3   ELTLYERMCQKLKKTKDSFIQKVENVVYYGDLDDDFFDELEETFILSDLGIETATKITET 62

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  +        ++ + D+   I   ++ + K         P ++LVVGVNGVGKTT I 
Sbjct: 63  LREQIKETKTKAKQDVMDLLRQIMTEMVEVEKHQT----ELPVIMLVVGVNGVGKTTTIA 118

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KL++K  D G KVM+AA DTFR+AA +QL +WADR   D + S  G+D +++ ++A   A
Sbjct: 119 KLAQKYKDQGKKVMVAAADTFRAAAAEQLDVWADRVGVDIIKSVQGADPSSVVFDAIGAA 178

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  D+L+ DTAGRLHN   LM  + K+ RV++R         L VLDATTGQNAL Q 
Sbjct: 179 RARGADILLCDTAGRLHNKVNLMKELEKITRVVEREGQGFSVHNLLVLDATTGQNALNQA 238

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+      G++MTKMDGTA+GG  I I+   ++P+ ++G+GE   DL  F A +F  +
Sbjct: 239 KTFNDAVHLDGIVMTKMDGTAKGGVAIAIIDELQVPIEYVGIGEKPEDLIDFDAGEFVRM 298

Query: 310 ITGCLDYGEE 319
           +       EE
Sbjct: 299 LYEGGGQNEE 308


>gi|254779261|ref|YP_003057366.1| putative signal recognition particule receptor FtsY [Helicobacter
           pylori B38]
 gi|254001172|emb|CAX29135.1| Putative signal recognition particule receptor FtsY [Helicobacter
           pylori B38]
          Length = 293

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 160/291 (54%), Gaps = 9/291 (3%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           F     K+K    + I  ++ ++  +EELE++LI  DI   + + +++ L      K + 
Sbjct: 5   FKKIVNKIKG---EEIKEKKRENVPKEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLE 61

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           V  + +   E  +       K      + +P V L+VGVNG GKTT I KL+K       
Sbjct: 62  VALLRFVRGESYYD------KTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHK 115

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K +L AGDTFR+AA+ QL++W ++ +   + ++ GSD ++LAY   + A AK +D + ID
Sbjct: 116 KALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFID 175

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRLHN + L   + K+ R   ++   AP     +LD T G + L Q ++FH      G
Sbjct: 176 TAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDG 235

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +IMTK+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F   + 
Sbjct: 236 VIMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLV 286


>gi|57900094|dbj|BAD88156.1| putative chloroplast SRP receptor cpFtsY precursor [Oryza sativa
           Japonica Group]
 gi|215736953|dbj|BAG95882.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215766594|dbj|BAG98698.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 199

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 90/198 (45%), Positives = 135/198 (68%), Gaps = 1/198 (0%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-E 173
           ++VGVNG GKTT +GKL+ +  + G+KV++AAGDTFR+AA DQL++WA+RT ++ V   +
Sbjct: 1   MIVGVNGGGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDND 60

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +  A++  +A K+ + +  D+++ DT+GRLH N  LM  +    +V+ +  P AP+ +
Sbjct: 61  KKAKPASVLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEI 120

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLD TTG N L+Q   F+ V G TG ++TK+DGTARGG ++ +V    IPV F+GVGE
Sbjct: 121 LLVLDGTTGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGE 180

Query: 294 GINDLEPFVAKDFSAVIT 311
           G+ DL+PF A+ F   I 
Sbjct: 181 GMEDLQPFDAEAFVEAIF 198


>gi|237830449|ref|XP_002364522.1| signal recognition particle 54 kda protein, putative [Toxoplasma
           gondii ME49]
 gi|211962186|gb|EEA97381.1| signal recognition particle 54 kda protein, putative [Toxoplasma
           gondii ME49]
 gi|221507395|gb|EEE32999.1| signal recognition particle 54 kda protein, putative [Toxoplasma
           gondii VEG]
          Length = 582

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 79/242 (32%), Positives = 120/242 (49%), Gaps = 8/242 (3%)

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E+ T+  A  V+ ++++   V   I  ML P  +P+        +VI+ VG+ G GKTT 
Sbjct: 131 EINTRAAAVGVNSRKIIQKCVISEIVAMLTPARQPY-VPRKGATNVIMFVGLQGSGKTTT 189

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             K +      G +V L   DTFR+ A DQLK  A +    F  S   +D   +A E  +
Sbjct: 190 CTKYAHYYQRKGWRVALVCADTFRAGAFDQLKQNATKVRIPFYGSYTEADPVKIAEEGVE 249

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           Q + +K D++I+DT+GR    + L      M +V + +DP     V+ V+D+  GQ    
Sbjct: 250 QFRREKYDMIIVDTSGRHKQEAALFDE---MKQVAEAVDP---DDVVFVMDSHIGQACFD 303

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           Q + F        +I+TK+DG A+GGG +  V     P+ FLG GE  +D E F A  F 
Sbjct: 304 QAQAFSDSVDVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDFEAFEANSFV 363

Query: 308 AV 309
           + 
Sbjct: 364 SR 365



 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 21 FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLT 72
           A    ++   +  + ++  +D+ V +E    +   L+++D+ V V Q+    +  
Sbjct: 3  LAELGEQISGALRRLHTATVVDEQVVQECVMAVCRALLQADVHVRVVQQFKASVTA 58


>gi|291004106|ref|ZP_06562079.1| signal recognition particle GTPase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 346

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 105/282 (37%), Positives = 160/282 (56%), Gaps = 16/282 (5%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           D+   EE+ED L+ +D+G A   +I + L ++  ++ +     +     L+ ++L+    
Sbjct: 70  DEESWEEIEDTLLMADLGAATTTEITDRLRSELASRGLRTSEQVRA---LLREVLVDALG 126

Query: 102 P-----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           P            +     +P V+LVVGVNG GKTT  GKL++ +   G  V+L A DTF
Sbjct: 127 PDMQRSVQALPHGDPADGGKPAVVLVVGVNGTGKTTTTGKLARVLVADGRTVLLGAADTF 186

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R+AA++QL  W +R  A+ V    G+D A++A+EA  +     VD ++IDTAGRLH  + 
Sbjct: 187 RAAAVEQLATWGERVGAEVVRGNEGADPASVAFEAVSRGSDTAVDTVLIDTAGRLHTKTG 246

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           LM  +GK+ RV+++        VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA
Sbjct: 247 LMDELGKVKRVVEKR--AQVDEVLLVLDATTGQNGLTQARVFSDVVDVTGIVLTKLDGTA 304

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +GG +  +     +PV  +G+GEG +DL PF    F   + G
Sbjct: 305 KGGIVFQVQRELGVPVKLVGLGEGPDDLAPFEPGAFVDALLG 346


>gi|300933892|ref|ZP_07149148.1| signal recognition particle receptor [Corynebacterium resistens DSM
           45100]
          Length = 483

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 114/304 (37%), Positives = 171/304 (56%), Gaps = 5/304 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             + KL    + +   +  G+  I+S+  LD+   EE+ED L+ +D+G      +VE+L 
Sbjct: 182 GRLGKLRGRMSKSQNVIGRGVLGILSAGDLDEDAWEEIEDTLLMADLGTKTTLAVVEDLR 241

Query: 72  TKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVI 128
            +     VS +     +  + LI      L +      +  +P VI+VVGVNG GKTT  
Sbjct: 242 ERIAINGVSSEAEARAMLRAALIDACKPELDRSIKAMPYDGKPAVIMVVGVNGTGKTTTT 301

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKLS+ +     KV+L A DTFR+AA DQL+ W  R  A+ V  + G+D A++A++A  +
Sbjct: 302 GKLSRVLVGMDHKVLLGAADTFRAAAADQLETWGRRVGAETVRGKEGADPASVAFDAVAK 361

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
                VDV++IDTAGRLH +  LM  +GK+ RV+++        VL VLDAT GQN L Q
Sbjct: 362 GTEDGVDVVVIDTAGRLHTSVGLMDQLGKVKRVVEKKAK--VDEVLLVLDATVGQNGLMQ 419

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F  
Sbjct: 420 ARVFREVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESFVD 479

Query: 309 VITG 312
            + G
Sbjct: 480 ALLG 483


>gi|147920512|ref|YP_685694.1| putative signal recognition particle [uncultured methanogenic
           archaeon RC-I]
 gi|110621090|emb|CAJ36368.1| putative signal recognition particle [uncultured methanogenic
           archaeon RC-I]
          Length = 377

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 99/284 (34%), Positives = 154/284 (54%), Gaps = 14/284 (4%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIH 93
           ++S + L +G   ELE  L+ SD+ + VA+ I++ +      +     R   D++E  + 
Sbjct: 99  VLSEKDL-EGPLWELEMALLESDVALPVAESIIKRVKEDLTGQHKKFLRSTGDLAEDALR 157

Query: 94  KMLMPLSKPFNWDF------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             +  +      DF      S+RP VI  +GVNG GKTT I KL +++ + G  V++AAG
Sbjct: 158 DSIASILNTNALDFDDFVRKSNRPVVITFIGVNGAGKTTTIAKLGERLKEQGYGVVIAAG 217

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+ AI+QL+  ADR     +    G+D AA+ Y+A + A+  K D+++ DTAGRLH 
Sbjct: 218 DTFRAGAIEQLEKHADRLGIKMIKHAQGADPAAVIYDAVQFAKNNKKDIVLADTAGRLHT 277

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           N  LM  + K+ RV+K      P  V+ V +A  G +A+ + ++F+     +G I+TK D
Sbjct: 278 NINLMEQLRKINRVVK------PDLVIFVDEAIAGNDAVERAKLFNDAVPVSGTILTKAD 331

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             A+GG  I I      P+ FLGVG+   DL+ F    F   + 
Sbjct: 332 ADAKGGAAISIAHITGKPILFLGVGQEYKDLKKFETDWFVDRLF 375


>gi|261839418|gb|ACX99183.1| cell division protein (ftsY) [Helicobacter pylori 52]
          Length = 297

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 94/266 (35%), Positives = 149/266 (56%), Gaps = 6/266 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 31  KEELEEILIGFDIQYDLIESLLNHLGDLVTPKQLEVALLRFVRGESYYD------KTRLK 84

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 85  TITTKPLVYLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +LG+GE  +DL  F  + F   + 
Sbjct: 265 IIYLGMGEKEDDLIAFDEERFIEDLV 290


>gi|317010981|gb|ADU84728.1| signal recognition particle receptor [Helicobacter pylori
           SouthAfrica7]
          Length = 293

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 160/291 (54%), Gaps = 9/291 (3%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           F     K+K    + +  ++ ++  +EELE++LI  DI   + + +++ L      K + 
Sbjct: 5   FKKIVNKIKG---EEVKEKKRENIPKEELEEILIGFDIQYDLIESLLQHLGDLVTPKQLE 61

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           V  + +   E  +       K      + +P V L+VGVNG GKTT I KL+K       
Sbjct: 62  VALLRFVRGESYYD------KTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHK 115

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K +L AGDTFR+AA+ QL++W +R +   + ++ GSD ++LAY   + A AK +D + ID
Sbjct: 116 KALLGAGDTFRAAAVKQLQLWGERLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFID 175

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRLHN + L   + K+ R   ++   AP     +LD T G + L Q ++FH      G
Sbjct: 176 TAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDG 235

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +IMTK+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F   + 
Sbjct: 236 VIMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLV 286


>gi|307637453|gb|ADN79903.1| Signal recognition particle receptor protein [Helicobacter pylori
           908]
 gi|325996043|gb|ADZ51448.1| Signal recognition particle receptor protein [Helicobacter pylori
           2018]
 gi|325997638|gb|ADZ49846.1| Cell division protein [Helicobacter pylori 2017]
          Length = 292

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 94/266 (35%), Positives = 150/266 (56%), Gaps = 6/266 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + +++ L      K + V  + +   E  +       K    
Sbjct: 26  KEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYYD------KTRLK 79

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 80  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTFRAAAVKQLQLWGEKL 139

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 140 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 199

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 200 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 259

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +LG+GE  +DL  F  + F   + 
Sbjct: 260 ILYLGMGEKEDDLIAFDEERFIEDLV 285


>gi|217033744|ref|ZP_03439170.1| hypothetical protein HP9810_7g25 [Helicobacter pylori 98-10]
 gi|216943793|gb|EEC23233.1| hypothetical protein HP9810_7g25 [Helicobacter pylori 98-10]
          Length = 297

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 94/266 (35%), Positives = 149/266 (56%), Gaps = 6/266 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 31  KEELEEILIGFDIQYDLIESLLNHLGDLVTPKQLEVALLRFVRGESYYD------KTRLK 84

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 85  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +LG+GE  +DL  F  + F   + 
Sbjct: 265 ILYLGMGEKEDDLIAFDEERFIEDLV 290


>gi|208434674|ref|YP_002266340.1| signal recognition particle receptor [Helicobacter pylori G27]
 gi|208432603|gb|ACI27474.1| signal recognition particle receptor [Helicobacter pylori G27]
          Length = 293

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 97/291 (33%), Positives = 160/291 (54%), Gaps = 9/291 (3%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           F     K+K    + +  ++ ++  +EELE++LI  DI   + + +++ L      K + 
Sbjct: 5   FKKIVNKIKG---EEVKEKKRENIPKEELEEILIGFDIQYDLIENLLKHLGDLVTPKQLE 61

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           V  + +   E  +       K      + +P V L+VGVNG GKTT I KL+K       
Sbjct: 62  VALLRFVRGESYYD------KTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHK 115

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K +L AGDTFR+AA+ QL++W ++ +   + ++ GSD ++LAY   + A AK +D + ID
Sbjct: 116 KALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFID 175

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRLHN + L   + K+ R   ++   AP     +LD T G + L Q ++FH      G
Sbjct: 176 TAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDG 235

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +IMTK+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F   + 
Sbjct: 236 VIMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLV 286


>gi|308184548|ref|YP_003928681.1| cell division protein (ftsY) [Helicobacter pylori SJM180]
 gi|308060468|gb|ADO02364.1| cell division protein (ftsY) [Helicobacter pylori SJM180]
          Length = 293

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 154/292 (52%), Gaps = 15/292 (5%)

Query: 27  KLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
              + I + I      +       +EELE++LI  DI   + + +++ L      K + V
Sbjct: 3   NFFKKIVNKIKGEEAKEEKRQSVPKEELEEILISFDIQYDLIESLLKHLGDLVTPKQLEV 62

Query: 82  QRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
                    L+  +       K      + +P V L+VGVNG GKTT I KL+K      
Sbjct: 63  A--------LLRFVRGDSYYDKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQH 114

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            K +L AGDTFR+AA+ QL++W ++ +   + ++ GSD ++LAY   + A AK +D + I
Sbjct: 115 KKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFI 174

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLHN + L   + K+ R   ++   AP     +LD T G + L Q ++FH      
Sbjct: 175 DTAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALD 234

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G+IMTK+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F   + 
Sbjct: 235 GVIMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLV 286


>gi|317014174|gb|ADU81610.1| signal recognition particle-docking protein FtsY [Helicobacter
           pylori Gambia94/24]
          Length = 292

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 95/266 (35%), Positives = 151/266 (56%), Gaps = 6/266 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + +++ L      K + V  + +   E  +       K    
Sbjct: 26  KEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALLRFVRGESYYD------KTRLK 79

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 80  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 139

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 140 NVQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 199

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 200 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 259

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +LG+GE  +DL  F  + F A + 
Sbjct: 260 ILYLGMGEKEDDLIAFDEERFIADLV 285


>gi|217032167|ref|ZP_03437666.1| hypothetical protein HPB128_186g33 [Helicobacter pylori B128]
 gi|298736465|ref|YP_003728991.1| signal recognition particle receptor [Helicobacter pylori B8]
 gi|216946157|gb|EEC24766.1| hypothetical protein HPB128_186g33 [Helicobacter pylori B128]
 gi|298355655|emb|CBI66527.1| signal recognition particle receptor [Helicobacter pylori B8]
          Length = 297

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 95/266 (35%), Positives = 151/266 (56%), Gaps = 6/266 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + +++ L      K + V  + +   E  +       K    
Sbjct: 31  KEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALLRFVRGESYYD------KTRLK 84

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 85  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTFRAAAVKQLQLWGEKL 144

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +LG+GE  +DL  F  + F A + 
Sbjct: 265 ILYLGMGEKEDDLIAFDEERFIADLV 290


>gi|317009226|gb|ADU79806.1| signal recognition particle receptor [Helicobacter pylori India7]
          Length = 293

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 157/287 (54%), Gaps = 7/287 (2%)

Query: 26  LKLKEGITDIISSRRLDDGV-REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
            K+   I    +  +  + + +EELE++LI  DI   + + +++ L      K + V  +
Sbjct: 6   KKIVNKIKGEETKEKKRESIPKEELEEILIGFDIQYDLIESLLKHLGDLVTPKQLEVALL 65

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
            +   E  +       K      + +P V L+VGVNG GKTT I KL+K       K +L
Sbjct: 66  RFVRGESYYD------KTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLL 119

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            AGDTFR+AA+ QL++W ++ +   + ++ GSD ++LAY   + A AK +D + IDTAGR
Sbjct: 120 GAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGR 179

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LHN + L   + K+ R   ++   AP     +LD T G + L Q ++FH      G+IMT
Sbjct: 180 LHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMT 239

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F   + 
Sbjct: 240 KLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLV 286


>gi|189219288|ref|YP_001939929.1| Signal recognition particle GTPase [Methylacidiphilum infernorum
           V4]
 gi|189186146|gb|ACD83331.1| Signal recognition particle GTPase [Methylacidiphilum infernorum
           V4]
          Length = 440

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 83/304 (27%), Positives = 127/304 (41%), Gaps = 18/304 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                 KL+    ++    +L +        E+   L+ SD+ V V ++I EE+  K   
Sbjct: 6   LELLQQKLQSLFKNLRGYGKLSEENISGAIREIRLALLASDVHVQVVKEICEEVKQKSLG 65

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K V        + +    + + + L       + D   RP  IL+ G+NG GKTT   KL
Sbjct: 66  KKVLETIRPGDQFIKIFHDELIQYLEADKNGLSTD---RPLRILLCGLNGSGKTTTAAKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        +V L A D  R AAI QL   A +  A     +              ++  
Sbjct: 123 ALWCKKNRERVGLVAADLTRPAAIAQLSKLASQVGAPVYSPQEAEKLDDFLLRVATESVQ 182

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            ++ V+I DTAGRL  +  L+  +  +  ++       P  VL V+D+ TGQ  +  V  
Sbjct: 183 DRLSVVIYDTAGRLDLDDELLEELHHIYELVS------PQEVLIVIDSATGQKGVDVVAA 236

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TGLI++K DG ARGG    +     +P+ F+G GE I  LE F        + 
Sbjct: 237 FRQKIPLTGLILSKFDGDARGGAAFSVKKVTGVPILFMGTGEKIESLEVFRPDRLVDRLF 296

Query: 312 GCLD 315
           G  D
Sbjct: 297 GFGD 300


>gi|308182922|ref|YP_003927049.1| cell division protein (ftsY) [Helicobacter pylori PeCan4]
 gi|308065107|gb|ADO06999.1| cell division protein (ftsY) [Helicobacter pylori PeCan4]
          Length = 292

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 94/266 (35%), Positives = 149/266 (56%), Gaps = 6/266 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 26  KEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYYD------KTRLK 79

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 80  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 139

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 140 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 199

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 200 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 259

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +LG+GE  +DL  F  + F   + 
Sbjct: 260 ILYLGMGEKEDDLIAFDEERFIEDLV 285


>gi|300858750|ref|YP_003783733.1| signal recognition particle receptor [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686204|gb|ADK29126.1| signal recognition particle receptor [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206457|gb|ADL10799.1| Cell division protein ftsY-like protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302331013|gb|ADL21207.1| Signal recognition particle GTPase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276699|gb|ADO26598.1| Signal recognition particle GTPase [Corynebacterium
           pseudotuberculosis I19]
          Length = 548

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 112/313 (35%), Positives = 177/313 (56%), Gaps = 5/313 (1%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            Q+  + +   I +L    + +     + +  ++S+  LD+   E++E  LI++D+GVA+
Sbjct: 238 PQEDIAPAAGRIGRLRGRLSRSQNVFGKSVLGMLSAGELDEDAWEDIEAQLIQADLGVAI 297

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFN-WDFSHRPHVILVVGV 119
             K+V++L      + V+ +     + +  LI      L +      +  +P V+LVVGV
Sbjct: 298 TTKVVDDLREMIAERGVASEAEARAMLKECLIRACKPELDRSIKAIPYEGKPAVVLVVGV 357

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W  R  A  +    G+D A
Sbjct: 358 NGTGKTTTTGKLARVLVAMGHSVVLGAADTFRAAAADQLETWGRRVGARTIRGAEGADPA 417

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A  +      DV+++DTAGRLHN+S LM  +GK+ RV+++        VL VLDA
Sbjct: 418 SVAFDAVAEGVKIGADVVLVDTAGRLHNSSNLMDQLGKVKRVVEKK--AVVDEVLLVLDA 475

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN L Q   F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL 
Sbjct: 476 TTGQNGLTQARTFREVVNITGVVLTKLDGTAKGGIVFQVQEDLGVPVKLVGLGEGADDLA 535

Query: 300 PFVAKDFSAVITG 312
           PF  + F   + G
Sbjct: 536 PFEVEGFVDALLG 548


>gi|309775369|ref|ZP_07670374.1| signal recognition particle-docking protein FtsY
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916886|gb|EFP62621.1| signal recognition particle-docking protein FtsY
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 270

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 106/256 (41%), Positives = 150/256 (58%), Gaps = 1/256 (0%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR 110
           +L+ +DIG+  AQKIV+E+  +   + +     + + +  ++H++               
Sbjct: 3   VLLEADIGIKTAQKIVDEVENRAMDEKLKSFDEISECLIAVMHELYTSYEDADFHKNEDG 62

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P VIL+VGVNG GKTT   KL+K   + G  V+LAA DTFR+ AIDQL  WADR     +
Sbjct: 63  PTVILMVGVNGSGKTTTTAKLTKLFQNEGSSVVLAAADTFRAGAIDQLAKWADRLGVACI 122

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G D +A   +A + A+   +D LI DTAGRL N + LM  + KM RV++R  P AP
Sbjct: 123 KGREGGDPSAALVDACRYAKDNGMDYLIGDTAGRLQNKANLMQELSKMRRVIEREIPGAP 182

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
           H V  VLDATTGQN + Q ++F      TG+I+TKMDGTA+GG +I I     +PV ++G
Sbjct: 183 HEVWLVLDATTGQNGISQAQIFLETTKVTGIILTKMDGTAKGGIVIAIRDLLGLPVKYIG 242

Query: 291 VGEGINDLEPFVAKDF 306
           +GE  +DL PF    +
Sbjct: 243 LGEKEDDLRPFDIDSY 258


>gi|148762461|dbj|BAF63932.1| signal recognition particle GTPase [Virgibacillus sp. Sa12-3XX]
          Length = 260

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 127/254 (50%), Gaps = 17/254 (6%)

Query: 32  ITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQ 82
           I  I    ++ +  V+E   E+   L+ +D+   V + +++ +  +   ++V       Q
Sbjct: 9   IKKITGKGKVSEQDVKEMTREVRLALLEADVNFKVVKDLIKRIKERAIGQEVMESLTPGQ 68

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLK 141
           +V+  V E + ++    +          P V+++VG+ G GKTT  GKL+  +       
Sbjct: 69  QVIKVVKEELTELTGGENSKIAV-ADRAPTVVMMVGLQGAGKTTTTGKLANLLRKKHNRS 127

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            +L A D +R AAI QL+   ++ +         ++   +A +A ++A+ +  D +IIDT
Sbjct: 128 PLLVACDVYRPAAIKQLETLGEQLTMPVFSMGTEANPVDIATKAIEKAREEHHDYVIIDT 187

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH ++ LM  + ++   +K      P  +  V+D+ TGQ+A+   E F+     +G+
Sbjct: 188 AGRLHVDNELMDELQEIKANVK------PDEIFLVVDSMTGQDAVNVAESFNEQLDLSGV 241

Query: 262 IMTKMDGTARGGGL 275
           ++TK+DG  RGG  
Sbjct: 242 VLTKLDGDTRGGAA 255


>gi|317180527|dbj|BAJ58313.1| cell division protein [Helicobacter pylori F32]
          Length = 297

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 94/266 (35%), Positives = 149/266 (56%), Gaps = 6/266 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 31  KEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYYD------KTRLK 84

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 85  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +LG+GE  +DL  F  + F   + 
Sbjct: 265 ILYLGMGEKEDDLIAFDEERFIEDLV 290


>gi|188527393|ref|YP_001910080.1| cell division protein (ftsY) [Helicobacter pylori Shi470]
 gi|188143633|gb|ACD48050.1| cell division protein (ftsY) [Helicobacter pylori Shi470]
 gi|308062086|gb|ADO03974.1| cell division protein (ftsY) [Helicobacter pylori Cuz20]
 gi|317177406|dbj|BAJ55195.1| cell division protein [Helicobacter pylori F16]
 gi|317182074|dbj|BAJ59858.1| cell division protein [Helicobacter pylori F57]
          Length = 297

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 94/266 (35%), Positives = 149/266 (56%), Gaps = 6/266 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 31  KEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEVALLRFVRGESYYD------KTRLK 84

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 85  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++
Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKV 204

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 205 LKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +LG+GE  +DL  F  + F   + 
Sbjct: 265 ILYLGMGEKEDDLIAFDEERFIEDLV 290


>gi|225022015|ref|ZP_03711207.1| hypothetical protein CORMATOL_02047 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945212|gb|EEG26421.1| hypothetical protein CORMATOL_02047 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 743

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 114/314 (36%), Positives = 173/314 (55%), Gaps = 5/314 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             Q     ++  I KL    + +       +  ++S+  LDD   E++E  LI++D+GV 
Sbjct: 432 KPQDTIEPAVGRIGKLRGRLSKSQNVFGRSVLGMLSAGDLDDDAWEDIETQLIQADLGVK 491

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFN-WDFSHRPHVILVVG 118
           +   +V+EL      + VS +     +    LI      L +      ++ +P V+LVVG
Sbjct: 492 ITTNVVDELREMIAERGVSSEDEARAMLRECLIAACKPELDRSIKAMPYNGKPAVVLVVG 551

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL++ +   G KV+L A DTFR+AA DQL+ W  R  A  V     +D 
Sbjct: 552 VNGTGKTTTTGKLARVLVSMGHKVLLGAADTFRAAAADQLEAWGRRVGATTVRGAEAADP 611

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++A++A  +      DV++IDTAGRLHN++ LM  + K+ RV+++        VL VLD
Sbjct: 612 ASVAFDAVSKGVETHADVVLIDTAGRLHNSTNLMDQLRKVKRVVEKK--AVVDEVLLVLD 669

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q + F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL
Sbjct: 670 ATTGQNGLVQAKTFGDVVNITGVVLTKLDGTAKGGIVFQVQEDLGVPVKLVGLGEGADDL 729

Query: 299 EPFVAKDFSAVITG 312
            PF  + F   + G
Sbjct: 730 APFEVEGFVDALLG 743


>gi|297559202|ref|YP_003678176.1| signal recognition particle-docking protein FtsY [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843650|gb|ADH65670.1| signal recognition particle-docking protein FtsY [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 394

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 175/312 (56%), Gaps = 9/312 (2%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    S   + +L    A +     +G+ +++SS  LD+   EE+ED LI +DIGVA A 
Sbjct: 84  ETPPPSAGRMVRLRARLARSQNAFGKGLLNLLSSDSLDEDTWEEIEDTLITADIGVASAA 143

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-----ILVVGV 119
           +IVE L T+           +  +  L  ++L  ++   +      PH      ++VVGV
Sbjct: 144 QIVENLRTRVKVLGTRGTEEVRTL--LREELLAQITTGADRAVRTGPHDGRPGVVMVVGV 201

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT  GKL++ +   G  V+L A DTFR+AA +QL+ W  R  A  V  E G+D A
Sbjct: 202 NGTGKTTTTGKLARVLVGDGRSVVLGAADTFRAAATEQLETWGSRVGAPVVRKEEGADPA 261

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A++A  +   +  D +IIDTAGRLH  + LM  +GK+ RV+++        VL VLDA
Sbjct: 262 SVAFDAVARGVEEGADTVIIDTAGRLHTKTGLMDELGKVKRVVEKK--SQVDEVLLVLDA 319

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           TTGQN LRQ  +F  V   TG+ +TK+DGTA+GG ++ +     +PV  +G+GEG +DL 
Sbjct: 320 TTGQNGLRQARVFGEVVNVTGIALTKLDGTAKGGIIVQVQRELGVPVKLVGLGEGPDDLA 379

Query: 300 PFVAKDFSAVIT 311
           PF  + F   I 
Sbjct: 380 PFDPEVFVDAIL 391


>gi|227548999|ref|ZP_03979048.1| signal recognition particle GTPase [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078909|gb|EEI16872.1| signal recognition particle GTPase [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 517

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 174/310 (56%), Gaps = 11/310 (3%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +   I KL    + +   + +G+  I+++  LD+   EE+ED LI +D+G  +  K+ E
Sbjct: 213 PAAGRIGKLRGRLSRSQNAIGQGLLGILTAGDLDEDAWEEIEDTLIMADLGTQLTLKVSE 272

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFS-----HRPHVILVVGVNGV 122
            L  K   + VS +    +   L+ + L+  + P  +          +P VILVVGVNG 
Sbjct: 273 SLRAKIAERGVSSE---AEARALLREALIEAAHPEMDRSIKAMPNEGKPAVILVVGVNGT 329

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W  R  A  V  + G+D A++A
Sbjct: 330 GKTTTTGKLARVLVSMGHSVVLGAADTFRAAAADQLETWGRRVGASTVRGKEGADPASVA 389

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A      +  DV+++DTAGRLH  + LM  +GK+ RV+++        VL VLDAT G
Sbjct: 390 FDAVATGVDQGADVVLVDTAGRLHTATGLMDQLGKVRRVVEKK--SHVDEVLLVLDATVG 447

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN + Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF 
Sbjct: 448 QNGITQARVFREVVNITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFE 507

Query: 303 AKDFSAVITG 312
            + F   + G
Sbjct: 508 VESFVDALLG 517


>gi|33519643|ref|NP_878475.1| GTP-binding signal recognition particle protein [Candidatus
           Blochmannia floridanus]
 gi|33517306|emb|CAD83691.1| 4.5S-RNP protein, GTP binding export factor, part of signal
           recognition particle with 4.5 RNA [Candidatus
           Blochmannia floridanus]
          Length = 457

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 18/307 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S K+ + I +I+ S+R+         + ++  L+ SD+ ++V Q  VE +      
Sbjct: 2   FTSLSKKMSQSIRNIMYSKRVTKYDVSKYLDIVQRSLLESDVALSVVQSFVELVKDNIIK 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGK 130
            ++     S    +  +   + K +       + + + R    +L+VG  G GKTT  GK
Sbjct: 62  INIDSCCISGPEFIKILRHALIKAMKCEVNGQDLNLNDRSLTKLLIVGAQGSGKTTTTGK 121

Query: 131 LSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD-AAALAYEAFKQ 188
           L++ +      KV++ + D +RSAAI+QLK++A     D       +     +  +A   
Sbjct: 122 LARFLKVRKNKKVLVVSTDVYRSAAINQLKVFASSEKIDCFEDYTSNIGPVQIVQKAIDY 181

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+    +V+++DTAG L  +      +  + +V+       P  VL V+D+  GQ ++  
Sbjct: 182 AKLNFYNVIVVDTAGCLKTDCNAFLELVDIYKVIN------PEEVLFVVDSMIGQGSIDI 235

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           + MF      TG+++TK+DG A GG  +        P+ F+G GE I+ LE F       
Sbjct: 236 INMFDKNLSLTGIVVTKLDGNACGGIALSAKFLTGKPIKFIGTGESIDTLEVFYPDRIVN 295

Query: 309 VITGCLD 315
            I G  D
Sbjct: 296 RIFGMGD 302


>gi|317178879|dbj|BAJ56667.1| cell division protein [Helicobacter pylori F30]
          Length = 297

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 94/266 (35%), Positives = 148/266 (55%), Gaps = 6/266 (2%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           +EELE++LI  DI   + + ++  L      K + V  + +   E  +       K    
Sbjct: 31  KEELEEILIGFDIQYDLIESLLNHLGDLVTPKQLEVALLRFVRGESYYD------KTRLK 84

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ 
Sbjct: 85  TITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKL 144

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +   + ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   + 
Sbjct: 145 NIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKA 204

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
              AP     +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P
Sbjct: 205 LKDAPFYKFLILDGTQGSSGLIQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLP 264

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +LG+GE  +DL  F  + F   + 
Sbjct: 265 ILYLGMGEKEDDLIAFDEERFIEDLV 290


>gi|210134966|ref|YP_002301405.1| cell division protein FtsY [Helicobacter pylori P12]
 gi|210132934|gb|ACJ07925.1| cell division protein FtsY [Helicobacter pylori P12]
          Length = 293

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/290 (33%), Positives = 156/290 (53%), Gaps = 11/290 (3%)

Query: 27  KLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
              + I + I    + +       +EELE++LI  DI   + + +++ L      K + V
Sbjct: 3   NFFKKIVNKIKGEEVKEKKRESVSKEELEEILIGFDIQYDLIESLLQHLGDLVTPKQLEV 62

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
             + +   E  +       K      + +P V L+VGVNG GKTT I KL+K       K
Sbjct: 63  ALLRFVRGESYYD------KTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKK 116

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            +L AGDTFR+AA+ QL++W ++ +   + ++ GSD ++LAY   + A AK +D + IDT
Sbjct: 117 ALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDT 176

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLHN + L   + K+ R   ++   AP     +LD T G + L Q ++FH      G+
Sbjct: 177 AGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV 236

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           IMTK+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F   + 
Sbjct: 237 IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLV 286


>gi|328948953|ref|YP_004366290.1| signal recognition particle-docking protein FtsY [Treponema
           succinifaciens DSM 2489]
 gi|328449277|gb|AEB14993.1| signal recognition particle-docking protein FtsY [Treponema
           succinifaciens DSM 2489]
          Length = 291

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 161/288 (55%), Gaps = 5/288 (1%)

Query: 27  KLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVEELLT-KRYAKDVSVQRV 84
              E + +++  ++   +   E+L D LI  D+G   A +IV+ L +  +  K  S + +
Sbjct: 5   SFSEKLKNLLGGKKNFSEDFFEDLTDALIEGDLGAKNAVEIVDNLESFCKKEKKFSPEEI 64

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
             ++  ++ K L P+S       + + ++ +V+GVNGVGKTT + K++K  S+  + V++
Sbjct: 65  TVELKNILMKFLKPVSIE---PSNGKVNIFMVLGVNGVGKTTTVAKMAKLYSEKNVNVIM 121

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+AA+DQL +  ++     V  ++GSD +A+ ++A    +A    ++I DTAGR
Sbjct: 122 AAADTFRAAAVDQLSMHGEKLKLRVVKHQMGSDPSAVVFDAADACKANNGGLVIADTAGR 181

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LHN   L+  + K+ R+         +  + V+DATTGQNA+RQ E+F+   G   +++T
Sbjct: 182 LHNKENLVNELKKIDRICASKADEGCYKKILVIDATTGQNAVRQAEVFNDAVGIDAVVLT 241

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           K D TA+GG L+ I     IPV F+  GE   +++ F  K +     G
Sbjct: 242 KYDSTAKGGALVSIGKDLNIPVLFVCTGEKYENIKSFDPKKYLDDFVG 289


>gi|219684854|ref|ZP_03539796.1| signal recognition particle-docking protein FtsY [Borrelia garinii
           PBr]
 gi|219671799|gb|EED28854.1| signal recognition particle-docking protein FtsY [Borrelia garinii
           PBr]
          Length = 281

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/286 (29%), Positives = 165/286 (57%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + E I ++  S +  + + E LED+L+ SDI   +   I+ +L  ++   + ++   +  
Sbjct: 3   ILEKIKNLFKSNQ-QENIIENLEDILLESDINNEIVIDIINKLTKEKNKNEKTI---IEK 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + EL+   +    K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A 
Sbjct: 59  LKELLSNYINI--KKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAA 115

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+Q+K++ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N
Sbjct: 116 DTFRAAAIEQMKVYGEQIGIKIISQNQGSDPSAVIFDSISSAKIKNYDALIIDTAGRLQN 175

Query: 208 NSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + K+  V+ +   + +  +  + V+D+T G+N   Q E+F+   G  G+I+TK
Sbjct: 176 KENLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNTNSQAEIFNKAIGIDGIIITK 235

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +D ++R G +I I    + P+YF   GE + D++ F   ++   + 
Sbjct: 236 LDSSSRAGAIINISKILEKPIYFTTFGEKLEDIKEFDINEYLNKLL 281


>gi|119719346|ref|YP_919841.1| signal recognition particle-docking protein FtsY [Thermofilum
           pendens Hrk 5]
 gi|119524466|gb|ABL77838.1| signal recognition particle-docking protein FtsY [Thermofilum
           pendens Hrk 5]
          Length = 302

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 92/303 (30%), Positives = 150/303 (49%), Gaps = 25/303 (8%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDL----LIRSDIGVAVAQKIVEELLTKRYAKDV--- 79
           K+   I + ++   LD+   +   D     L+ + + + VA+ +V +L  +   K +   
Sbjct: 8   KVFSAIIEEVAYTELDEKTLKRHADAFVLRLVEAGVALEVAEALVADLSGRISGKKLGRF 67

Query: 80  --SVQRVLYDVSELIHKM-LMPLSKPFNWDFSHRPHV-----ILVVGVNGVGKTTVIGKL 131
               + +L ++  LI  + L   S   +              IL +G NG GKTT + KL
Sbjct: 68  ADKRKALLDELRALIRDVFLSAGSVDLDGLVKRGVAGKGFFSILFLGPNGHGKTTTVAKL 127

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +    G +V +AA DTFR+ +I+Q+  WA R  A+ V     +D AA+AYEA K+ + 
Sbjct: 128 AYRFRKQGYRVAIAAADTFRAGSIEQVSQWASRAGAEVVSLGYNADPAAVAYEAVKKGEK 187

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
               V++IDTAGR+H    LM  + K+ RV       +P   + V DA  G +A+ Q + 
Sbjct: 188 GDFQVVLIDTAGRMHTKKNLMDEMKKIARV------ASPDFKVFVGDALVGNDAVEQAKT 241

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F +  G  G I+TK D   RGG  + +V   K P+ ++G G+GI DL+ F  +++     
Sbjct: 242 FFSEVGFDGSILTKFDADIRGGAALSVVYVTKKPLLYVGTGQGIEDLKEFNVEEY----L 297

Query: 312 GCL 314
           G L
Sbjct: 298 GML 300


>gi|38234113|ref|NP_939880.1| putative cell division protein [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200375|emb|CAE50063.1| Putative cell division protein [Corynebacterium diphtheriae]
          Length = 495

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 112/310 (36%), Positives = 175/310 (56%), Gaps = 9/310 (2%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
             ++  I +L    A +     + +  ++S+  LD+   E++E LLI++D+GV +   ++
Sbjct: 190 DPAVGRIGRLRGRLARSHNVFGKSVLGMLSAGDLDEEAWEDIEALLIQADLGVGITTAVI 249

Query: 68  EELL----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGV 122
           ++L      +    +   + +L +   LI+     L +      +  +P V+LVVGVNG 
Sbjct: 250 DQLRQLIAERGVENEAQARAMLREC--LINACKPELDRSIKAMPYDGKPAVVLVVGVNGT 307

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W  R +A  V    G+D A++A
Sbjct: 308 GKTTTTGKLARVLVSLGHSVVLGAADTFRAAAADQLETWGRRVNAHTVRGAEGADPASVA 367

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A         DV++IDTAGRLHN+S LM  +GK+ RV+++        VL VLDATTG
Sbjct: 368 FDAVAYGVDSHADVVLIDTAGRLHNSSNLMDQLGKVKRVVEKK--AVVDEVLLVLDATTG 425

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN L Q   F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF 
Sbjct: 426 QNGLAQARTFSEVVNITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGSDDLAPFE 485

Query: 303 AKDFSAVITG 312
            + F   + G
Sbjct: 486 VEGFVDALLG 495


>gi|319951004|ref|ZP_08024874.1| signal recognition particle-docking protein FtsY [Dietzia cinnamea
           P4]
 gi|319435347|gb|EFV90597.1| signal recognition particle-docking protein FtsY [Dietzia cinnamea
           P4]
          Length = 379

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 176/308 (57%), Gaps = 5/308 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
             +   + +L    A +   + +G+  ++ +  LD+   EE+ED LI +D+G    Q++V
Sbjct: 73  DPATGRLDRLRGRLARSQNTVGQGLLGLLGAGDLDEDAWEEIEDTLIMADLGATTTQRVV 132

Query: 68  EELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGK 124
           + L  +   + V  +  + D+    LI  +     +          P V+LVVGVNG GK
Sbjct: 133 DRLREEIATRQVRTEAEVRDLLRQTLIDNLHPEYDRSLRALPNDGTPAVLLVVGVNGTGK 192

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL++ +   G  ++L A DTFR+AA DQL+ WA+R  A+ V  + G+D A++A++
Sbjct: 193 TTTTGKLARVLVADGRAILLGAADTFRAAAADQLQTWAERVGAEVVRGKEGADPASVAFD 252

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A ++     VD +++DTAGRLH  + LM  +GK+ RV+++  P     VL V+DATTGQN
Sbjct: 253 AVRRGVETGVDAVLVDTAGRLHTKAGLMDELGKVKRVVEKKTP--VDEVLLVIDATTGQN 310

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  +
Sbjct: 311 GLMQARVFKEVVDITGVVLTKLDGTAKGGIVFQVQHELGVPVKLVGLGEGADDLAPFTPE 370

Query: 305 DFSAVITG 312
            F   + G
Sbjct: 371 AFVDALLG 378


>gi|289670362|ref|ZP_06491437.1| signal recognition particle protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 373

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 7/206 (3%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P +IL+ G+ G GKTT +GKL+K + +   K VM+ + D +R AAI+QLK  A++    F
Sbjct: 15  PAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLF 74

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           + S+       +   A   A+   VDVL++DTAGRL  ++ +M  I  +   +       
Sbjct: 75  LASDASQKPVDIVRAAISDARKSFVDVLLVDTAGRLAIDAAMMDEIKALHAAVN------ 128

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   L V+DA TGQ+A    + F      TG+++TK DG ARGG  + +      P+ F+
Sbjct: 129 PTETLFVVDAMTGQDAANTAKAFGEALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFV 188

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE  + L+ F     ++ I    D
Sbjct: 189 GTGEKTDGLDVFHPDRVASRILDMGD 214


>gi|219685383|ref|ZP_03540202.1| signal recognition particle-docking protein FtsY [Borrelia garinii
           Far04]
 gi|219673156|gb|EED30176.1| signal recognition particle-docking protein FtsY [Borrelia garinii
           Far04]
          Length = 281

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 86/286 (30%), Positives = 165/286 (57%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + E I ++  S +  + + E LED+L+ SDI   +   I+ +L  ++   + ++   +  
Sbjct: 3   ILEKIKNLFKSNQ-QENIIENLEDILLESDINNEIVIDIINKLTKEKNKNEKTI---IEK 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + EL+   +    K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A 
Sbjct: 59  LKELLSNYINI--KKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAA 115

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+Q+K++ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N
Sbjct: 116 DTFRAAAIEQMKVYGEQIGIKIISQNQGSDPSAVIFDSISSAKIKNYDALIIDTAGRLQN 175

Query: 208 NSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + K+  V+ +   + +  +  + V+D+T G+N   Q E+F+   G  G+I+TK
Sbjct: 176 KENLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNTNSQAEIFNKAIGIDGIIITK 235

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +D ++R G +I I    + PVYF   GE + D++ F   ++   + 
Sbjct: 236 LDSSSRAGAIINISKILEKPVYFTTFGEKLEDIKEFDINEYLNKLL 281


>gi|254383300|ref|ZP_04998653.1| signal recognition particle [Streptomyces sp. Mg1]
 gi|194342198|gb|EDX23164.1| signal recognition particle [Streptomyces sp. Mg1]
          Length = 412

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 177/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+E+ L+ +D+GV   Q
Sbjct: 103 EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVVPTQ 162

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNG 121
           ++V+ L  +           L  +   EL+  +     +    +  +  P V++VVGVNG
Sbjct: 163 ELVDRLRDRVKVLGTRTPADLRALLKEELLTLVGTDFDRAVKTEGGADTPGVVMVVGVNG 222

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W DR  A  V    G D A++
Sbjct: 223 TGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGDRVGARTVRGPEGGDPASI 282

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           AY+A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 283 AYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGP--LDEVLLVLDATT 340

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF
Sbjct: 341 GQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADDLAPF 400

Query: 302 VAKDFSAVITG 312
             + F   + G
Sbjct: 401 EPEAFVDALIG 411


>gi|145296027|ref|YP_001138848.1| hypothetical protein cgR_1950 [Corynebacterium glutamicum R]
 gi|140845947|dbj|BAF54946.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 586

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 177/307 (57%), Gaps = 11/307 (3%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             I KL    + +     + +  I+S+  LD+   E++E +LI++D+G  V  ++V++L 
Sbjct: 285 GRIGKLRTRLSRSQNVFGKSVLGILSAGDLDEDAWEDIEAMLIKADLGSKVTARVVDKLR 344

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGVGKT 125
            K   + V  +    +   ++ + L+   +P             +P V+LVVGVNG GKT
Sbjct: 345 DKIAERGVGSE---AEARAMLRETLIDACRPDLDRSIKAMPNEGKPAVVLVVGVNGTGKT 401

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T  GKL++ +   G KV+L A DTFR+AA DQL+ W  R  A+ V    G+D A++A++A
Sbjct: 402 TTTGKLARVLVSMGHKVVLGAADTFRAAAADQLETWGRRVGAETVRGAEGADPASIAFDA 461

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +   ++ DV++IDTAGRLH ++ LM  +GK+ RV+++        VL VLD+T GQN 
Sbjct: 462 VAKGVERQADVVLIDTAGRLHTSTGLMDQLGKVKRVVEKK--AVVDEVLLVLDSTVGQNG 519

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           ++Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + 
Sbjct: 520 MQQARIFREVVEITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEG 579

Query: 306 FSAVITG 312
           F   + G
Sbjct: 580 FVDALLG 586


>gi|305681342|ref|ZP_07404149.1| signal recognition particle-docking protein FtsY [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659547|gb|EFM49047.1| signal recognition particle-docking protein FtsY [Corynebacterium
           matruchotii ATCC 14266]
          Length = 755

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 173/314 (55%), Gaps = 5/314 (1%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             Q     ++  I KL    + +       +  ++S+  LDD   E++E  LI++D+GV 
Sbjct: 444 KPQDTIEPAVGRIGKLRGRLSKSQNVFGRSVLGMLSAGDLDDDAWEDIETQLIQADLGVK 503

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFN-WDFSHRPHVILVVG 118
           +   +V+EL      + VS +     +    LI      L +      ++ +P V+L+VG
Sbjct: 504 ITTNVVDELREMIAERGVSSEDEARAMLRECLIAACKPELDRSIKAMPYNGKPAVVLIVG 563

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GKL++ +   G KV+L A DTFR+AA DQL+ W  R  A  V     +D 
Sbjct: 564 VNGTGKTTTTGKLARVLVSMGHKVLLGAADTFRAAAADQLEAWGRRVGATTVRGAEAADP 623

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++A++A  +      DV++IDTAGRLHN++ LM  + K+ RV+++        VL VLD
Sbjct: 624 ASVAFDAVSKGVETHADVVLIDTAGRLHNSTNLMDQLRKVKRVVEKK--AVVDEVLLVLD 681

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           ATTGQN L Q + F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL
Sbjct: 682 ATTGQNGLVQAKTFGDVVNITGVVLTKLDGTAKGGIVFQVQEDLGVPVKLVGLGEGADDL 741

Query: 299 EPFVAKDFSAVITG 312
            PF  + F   + G
Sbjct: 742 APFEVEGFVDALLG 755


>gi|32490997|ref|NP_871251.1| hypothetical protein WGLp248 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166203|dbj|BAC24394.1| ffh [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 446

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 144/304 (47%), Gaps = 21/304 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S KL +    I    RL     +    ++   L+ +D+ + V QK ++E+      
Sbjct: 3   FENLSNKLYKIFYKIKEKGRLTSENINDTLRQVRIALLEADVALVVVQKFIQEIKKISLD 62

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           K ++      Q  +  V + + K++   SK  N +F     VI ++G+ G GKTT  GKL
Sbjct: 63  KKINNYLTPGQEFIKIVQKELIKIIG--SKNNNLNFCSGRSVIFLIGLQGSGKTTTTGKL 120

Query: 132 SKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEI-GSDAAALAYEAFKQA 189
           +K + +   K +   + D +R AA  QL++ +   + D   SE        +   A  ++
Sbjct: 121 AKYLKEKNKKKVLTVSSDVYRPAAQKQLELVSKSANVDCFLSENLYKTPYEIVKSAMNKS 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DVL+IDTAG  H N  ++  I  +  +       +P   L ++D+  GQ+++  +
Sbjct: 181 SL--YDVLLIDTAGFSHTNKKMIKEIQLLQSI------SSPSETLFIVDSMMGQDSINSI 232

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F+     TG+I+TK+DG +RGG  + I      P+ F+G GE I+ LE F  +  S  
Sbjct: 233 KTFNEKFSLTGVILTKLDGDSRGGIALSIKYITGKPIKFIGTGEKIDTLEIFSPEKLSKK 292

Query: 310 ITGC 313
           I G 
Sbjct: 293 ILGM 296


>gi|317012573|gb|ADU83181.1| cell division protein (ftsY) [Helicobacter pylori Lithuania75]
          Length = 293

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 96/290 (33%), Positives = 154/290 (53%), Gaps = 11/290 (3%)

Query: 27  KLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
              + I + I      +       +EELE++LI  DI   + + ++  L      K + V
Sbjct: 3   NFFKKIVNKIKGEEAKEKKRQSVPKEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEV 62

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
             + +   E  +       K      + +P V L+VGVNG GKTT I KL+K       K
Sbjct: 63  ALLRFVRGESYYD------KTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKK 116

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            +L AGDTFR+AA+ QL++W ++ +   + ++ GSD ++LAY   + A AK +D + IDT
Sbjct: 117 ALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDT 176

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLHN + L   + K+ R   ++   AP     +LD T G + L Q ++FH      G+
Sbjct: 177 AGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV 236

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           IMTK+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F   + 
Sbjct: 237 IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLV 286


>gi|217967337|ref|YP_002352843.1| signal recognition particle-docking protein FtsY [Dictyoglomus
           turgidum DSM 6724]
 gi|217336436|gb|ACK42229.1| signal recognition particle-docking protein FtsY [Dictyoglomus
           turgidum DSM 6724]
          Length = 299

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 175/299 (58%), Gaps = 9/299 (3%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
            LS+  +L K          E + +I    R+D  + +ELE  LI+SD+G+ +  +I+ E
Sbjct: 2   KLSFWDRLPK-----IKGFAERLQNIFKFSRVDTELLDELEMELIQSDLGIELTNEIIGE 56

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +  ++ +    ++  L+D       +L  L       + +R +V++ +GVNG GKT+ +G
Sbjct: 57  IKKRKISDMQELRDFLFDFF---KSILDGLDYKLRL-YDNRLNVVIFIGVNGTGKTSTVG 112

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K +  + + G   ++AA DTFR+AAIDQ+K W +R   D V  + G+D  A+ + A + A
Sbjct: 113 KFAYYLKNLGYFPIIAAADTFRAAAIDQIKRWGERVGVDVVAQKEGADPGAVVFNAIEAA 172

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +A+  DVL++DTAGR+H  S L+  + K+ +++++   + P   L V+DAT GQN +RQV
Sbjct: 173 KARNKDVLLVDTAGRMHTKSNLVEELKKIEKIVEKTLGYPPSENLVVIDATLGQNVVRQV 232

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
           E+FH     TG ++TK+DGTA+GG +  ++    IPV  + +GE ++DL+PF   +F  
Sbjct: 233 EIFHNAVNLTGAVLTKLDGTAKGGVIFNVIKRFNIPVKLVTIGEELDDLKPFDPNEFVE 291


>gi|302537178|ref|ZP_07289520.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           C]
 gi|302446073|gb|EFL17889.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           C]
          Length = 407

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 108/329 (32%), Positives = 163/329 (49%), Gaps = 41/329 (12%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+E+ L+ +D+GVA  Q
Sbjct: 98  EVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVAPTQ 157

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++VE L  +               +EL   +   L      DF                K
Sbjct: 158 ELVERLRERVKVLGT------RTPAELRTLLKEELLTLVGTDFDR------------AVK 199

Query: 125 TTVIG---------------------KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           T                         KL++ +   G  V+L A DTFR+AA DQL+ W +
Sbjct: 200 TESAADTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGE 259

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           R  A  V    G D A++AY+A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV++
Sbjct: 260 RVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVE 319

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           +  P     VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     
Sbjct: 320 KHGP--LDEVLLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELG 377

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +PV  +G+GEG +DL PF  + F   + G
Sbjct: 378 VPVKLVGLGEGPDDLAPFEPEAFVDALIG 406


>gi|257055013|ref|YP_003132845.1| signal recognition particle-docking protein FtsY [Saccharomonospora
           viridis DSM 43017]
 gi|256584885|gb|ACU96018.1| signal recognition particle-docking protein FtsY [Saccharomonospora
           viridis DSM 43017]
          Length = 516

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 117/316 (37%), Positives = 182/316 (57%), Gaps = 10/316 (3%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            ++VA  +   I +L    + +   L + +  ++ +  LD+   E++ED L+ +D+G A 
Sbjct: 203 KEEVA-PATGRIERLRGRLSKSRSALGQSLLGLLGAGDLDEESWEDVEDTLLIADLGAAT 261

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSK------PFNWDFSHRPHVIL 115
             +IVE L T+  A+ V        +  E++   L P S       P   D + +P V+L
Sbjct: 262 TTEIVETLRTELSARGVRTSEQARALLREVLVNALGPDSDRSVRALPHTVDGTKQPAVVL 321

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           V GVNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ WA+R  A+ +  + G
Sbjct: 322 VAGVNGTGKTTTTGKLARVLVAQGHDVVLGAADTFRAAAADQLQTWAERVGAEVIRGKEG 381

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +D A++A++A K+  +  VD ++IDTAGRLH  + LM  +GK+ RV+++        VL 
Sbjct: 382 ADPASVAFDAVKRGISSGVDAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAK--VDEVLL 439

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG 
Sbjct: 440 VLDATTGQNGLAQARVFSEVVDVTGIVLTKLDGTAKGGIVFQVQRELGVPVKLVGLGEGP 499

Query: 296 NDLEPFVAKDFSAVIT 311
           +DL PF  + F   + 
Sbjct: 500 DDLAPFEPEAFVDALL 515


>gi|171918534|gb|ACB58647.1| signal recognition particle protein [Veillonella dispar]
          Length = 222

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 66/204 (32%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I++VG+ G GKTT  GKL+ K+  +   + ++ A D +R AAIDQLK    + +      
Sbjct: 1   IMMVGLQGAGKTTFAGKLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDM 60

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A  +  +   QA+  + D ++IDTAGRL  +  LM  +  +  +        P+ 
Sbjct: 61  GTEHSAVEIVSQGLAQAKENRNDYVLIDTAGRLQIDEKLMTELRDIKALAN------PNE 114

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +L V+D+  GQ A      F+     TG+I+TK+DG  RGG  + +      P+ F G G
Sbjct: 115 ILLVVDSMIGQEAANVAREFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTG 174

Query: 293 EGINDLEPFVAKDFSAVITGCLDY 316
           E I D+E F     S+ I G  D 
Sbjct: 175 EKITDIETFHPDRMSSRILGMGDL 198


>gi|308063451|gb|ADO05338.1| cell division protein (ftsY) [Helicobacter pylori Sat464]
          Length = 293

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 97/290 (33%), Positives = 155/290 (53%), Gaps = 11/290 (3%)

Query: 27  KLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
              + I + I      +       +EELE++LI  DI   + + ++  L      K + V
Sbjct: 3   NFFKKIVNKIKGEEAKEKKRQSVPKEELEEILIGFDIQYDLIESLLNHLGDLITPKQLEV 62

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
             + +   E  +       K      + +P V L+VGVNG GKTT I KL+K       K
Sbjct: 63  ALLRFVRGESYYD------KTRLKTITTKPLVHLIVGVNGTGKTTTIAKLAKLSLKQHKK 116

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V+L AGDTFR+AA+ QL++W ++ +   + ++ GSD ++LAY   + A AK +D + IDT
Sbjct: 117 VLLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDT 176

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLHN + L   + K+ R   ++   AP     +LD T G + L Q ++FH      G+
Sbjct: 177 AGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV 236

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           IMTK+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F   + 
Sbjct: 237 IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLV 286


>gi|15611767|ref|NP_223418.1| hypothetical protein jhp0700 [Helicobacter pylori J99]
 gi|11386869|sp|Q9ZL80|FTSY_HELPJ RecName: Full=Cell division protein ftsY homolog
 gi|4155255|gb|AAD06275.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helicobacter pylori J99]
          Length = 293

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 95/290 (32%), Positives = 155/290 (53%), Gaps = 11/290 (3%)

Query: 27  KLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
              + I + I    + +       +EELE++LI  DI   + + +++ L      K + V
Sbjct: 3   NFFKKIVNKIKGEEVKEKKRESVPKEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEV 62

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
             + +   E  +       K      + +P V L+VGVNG GKTT I KL+K       K
Sbjct: 63  ALLRFVRGESYYD------KTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKK 116

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            +L AGDTFR+AA+ QL++W ++ +   + ++ GSD ++LAY   + A AK +D + IDT
Sbjct: 117 ALLGAGDTFRAAAVKQLQLWGEKLNVQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDT 176

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLHN + L   + K+     ++   AP     +LD T G + L Q ++FH      G+
Sbjct: 177 AGRLHNQTNLKNELSKIAHTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV 236

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           IMTK+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F   + 
Sbjct: 237 IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLV 286


>gi|15645382|ref|NP_207556.1| cell division protein (ftsY) [Helicobacter pylori 26695]
 gi|3334188|sp|O25458|FTSY_HELPY RecName: Full=Cell division protein ftsY homolog
 gi|2313887|gb|AAD07809.1| cell division protein (ftsY) [Helicobacter pylori 26695]
          Length = 293

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 154/292 (52%), Gaps = 15/292 (5%)

Query: 27  KLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
              + I + I      +       +EELE++LI  DI   + + +++ L      K + V
Sbjct: 3   NFFKKIVNKIKGEEAKEKKRQSVPKEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEV 62

Query: 82  QRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
                    L+  +       K      + +P V L+VGVNG GKTT I KL+K      
Sbjct: 63  A--------LLRFVRGDSYYDKTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQH 114

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            K +L AGDTFR+AA+ QL++W ++ +   + ++ GSD ++LAY   + A AK +D + I
Sbjct: 115 KKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFI 174

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLHN + L   + K+ R   ++   AP     +LD T G + L Q ++FH      
Sbjct: 175 DTAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALD 234

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G+IMTK+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F   + 
Sbjct: 235 GVIMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLV 286


>gi|312140444|ref|YP_004007780.1| signal recognition particle protein [Rhodococcus equi 103S]
 gi|325675941|ref|ZP_08155624.1| cell division protein FtsY [Rhodococcus equi ATCC 33707]
 gi|311889783|emb|CBH49100.1| signal recognition particle protein [Rhodococcus equi 103S]
 gi|325553179|gb|EGD22858.1| cell division protein FtsY [Rhodococcus equi ATCC 33707]
          Length = 497

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 173/308 (56%), Gaps = 5/308 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
             +   + +L    + +   + + +  ++    LD+   EE+ED L+ +D+G A   K+V
Sbjct: 192 EPTAGRLDRLRGRLSRSQNAVGKSLLGLLGGGDLDEDSWEEVEDTLLIADLGTATTVKVV 251

Query: 68  EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGK 124
           E L  +  ++ V  +      + E++ + L P              P V+LVVGVNG GK
Sbjct: 252 ERLREEMASRGVRTEAEARALLREVLVEELRPEMDRSIRALPHGDHPAVLLVVGVNGTGK 311

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL++ +   G +V+L A DTFR+AA DQL+ WA+R  A+ V    G D AA+A++
Sbjct: 312 TTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQTWAERVGAEVVRGPEGGDPAAIAFD 371

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           +  +     VDV++IDTAGRLH  + LM  +GK+ RV+++    A   VL VLDAT GQN
Sbjct: 372 SVAKGIEDGVDVVLIDTAGRLHTKTGLMDELGKVKRVVEKK--AAVDDVLLVLDATVGQN 429

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  +
Sbjct: 430 GLMQARVFAEVVDITGVVLTKLDGTAKGGIVFQVQHELGVPVKLVGLGEGADDLAPFEPE 489

Query: 305 DFSAVITG 312
            F   + G
Sbjct: 490 AFVDALLG 497


>gi|229579653|ref|YP_002838052.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus Y.G.57.14]
 gi|228010368|gb|ACP46130.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus Y.G.57.14]
          Length = 208

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 122/208 (58%), Gaps = 6/208 (2%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
               S +P++I+  G+NGVGKTT I K +  +   GL  +++A DTFR+AA +QL+I A 
Sbjct: 6   EIKKSTKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSCIISASDTFRAAAQEQLEIHAR 65

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                 +  + G D A++AY+A + A+++ +DV++IDTAGR+H ++ L+  + +++ +  
Sbjct: 66  NLEIPLIKGKYGGDPASVAYDAIRAAKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNI-- 123

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P+  + VLD+  G +AL Q + F    G   +I+TK+D   +GG ++ +     
Sbjct: 124 ----TRPNLKILVLDSLGGNDALEQAKYFKNNVGFDLVILTKVDADVKGGVILSLAYELN 179

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            PV +LGVG+  +DL PF A+ F   + 
Sbjct: 180 KPVGYLGVGQTYDDLIPFNAEWFIQRLF 207


>gi|284998272|ref|YP_003420040.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus L.D.8.5]
 gi|284446168|gb|ADB87670.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus L.D.8.5]
          Length = 208

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 122/208 (58%), Gaps = 6/208 (2%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
               S +P++I+  G+NGVGKTT I K +  +   GL  +++A DTFR+AA +QL+I A 
Sbjct: 6   EIKKSTKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSCIISASDTFRAAAQEQLEIHAR 65

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                 +  + G D A++AY+A + A+++ +DV++IDTAGR+H ++ L+  + +++ +  
Sbjct: 66  NLEIPLIKGKYGGDPASVAYDAIRAAKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNI-- 123

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P+  + VLD+  G +AL Q + F    G   +I+TK+D   +GG ++ +     
Sbjct: 124 ----TRPNLKILVLDSLGGNDALEQAKYFENNVGFDLVILTKVDADVKGGVILSLAYELN 179

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            PV +LGVG+  +DL PF A+ F   + 
Sbjct: 180 KPVGYLGVGQTYDDLIPFNAEWFIQRLF 207


>gi|62390899|ref|YP_226301.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
 gi|41326238|emb|CAF20400.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
          Length = 576

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 176/307 (57%), Gaps = 5/307 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +   I KL    + +     + +  I+S+  LD+   E++E +LI++D+G  +  ++V+
Sbjct: 272 PAAGRIGKLRGRLSRSQSVFGKSVLGILSAGDLDEDAWEDIEAMLIKADLGAKITARVVD 331

Query: 69  ELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKT 125
           EL  K     V  +     +  + LI      L +      +  +P V+LVVGVNG GKT
Sbjct: 332 ELRDKIAEHGVGSEAEARAMLRASLIDACRPDLDRSIKAMPYEGKPAVVLVVGVNGTGKT 391

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T  GKL++ +   G KV+L A DTFR+AA DQL+ W  R  A+ V    G+D A++A++A
Sbjct: 392 TTTGKLARVLVSMGHKVILGAADTFRAAAADQLETWGRRVGAETVRGAEGADPASIAFDA 451

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +   ++ DV+++DTAGRLH ++ LM  +GK+ RV+++        VL VLDAT GQN 
Sbjct: 452 VAKGVERQADVVLVDTAGRLHTSTGLMDQLGKVKRVVEKK--AVVDEVLLVLDATVGQNG 509

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           ++Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + 
Sbjct: 510 MQQARIFREVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEG 569

Query: 306 FSAVITG 312
           F   + G
Sbjct: 570 FVDALLG 576


>gi|15622349|dbj|BAB66341.1| 356aa long hypothetical signal recognition particle protein
           [Sulfolobus tokodaii str. 7]
          Length = 356

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 73/210 (34%), Positives = 107/210 (50%), Gaps = 8/210 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
              P+VI++VGV G GKTT  GKL+      G KV L A D +R AA DQL     + + 
Sbjct: 3   KKIPYVIMLVGVQGSGKTTTAGKLALFYKKKGYKVGLVAADVYRPAAYDQLVQIGKQINV 62

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI--LMAGIGKMIRVLKRL 225
                   +DA  +A    ++  ++K D++I+DTAGR        L+  +  M   +K  
Sbjct: 63  PVYGEPNNTDAVGIAKRGVEKFLSEKYDIIIVDTAGRHGYGEEVKLLEEMKNMYSEIK-- 120

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P  V+ V+DA+ GQ A      FH  +    +I+TKMDGTA+GGG +  V      
Sbjct: 121 ----PDEVILVIDASIGQKAYDLASRFHQASPIGSIIVTKMDGTAKGGGALSAVAATGAA 176

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + F+G GE +++LE F  + F + I G  D
Sbjct: 177 IKFIGTGEKLDELEVFNPRRFVSRILGMGD 206


>gi|332673434|gb|AEE70251.1| cell division protein FtsY [Helicobacter pylori 83]
          Length = 297

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 95/300 (31%), Positives = 159/300 (53%), Gaps = 12/300 (4%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           ++ +K+            E + +    ++     +E+LE++LI  DI   + + ++  L 
Sbjct: 3   NFFKKIVNKIK------GEEVREEAKEKKRQSVPKEKLEEILIGFDIQYDLIESLLNHLG 56

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                K + V  + +   E  +       K      + +P V L+VGVNG GKTT I KL
Sbjct: 57  DLITPKQLEVALLRFVRGESYYD------KTRLKTITTKPLVHLIVGVNGAGKTTTIAKL 110

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K       K +L AGDTFR+AA+ QL++W ++ +   + ++ GSD ++LAY   + A A
Sbjct: 111 AKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISTKEGSDPSSLAYNTIESAIA 170

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K +D + IDTAGRLHN + L   + K+ R   ++   AP     +LD T G + L Q ++
Sbjct: 171 KNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKI 230

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           FH      G+IMTK+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F   + 
Sbjct: 231 FHETLALDGVIMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLV 290


>gi|19553263|ref|NP_601265.1| signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
          Length = 582

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 176/307 (57%), Gaps = 5/307 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +   I KL    + +     + +  I+S+  LD+   E++E +LI++D+G  +  ++V+
Sbjct: 278 PAAGRIGKLRGRLSRSQSVFGKSVLGILSAGDLDEDAWEDIEAMLIKADLGAKITARVVD 337

Query: 69  ELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKT 125
           EL  K     V  +     +  + LI      L +      +  +P V+LVVGVNG GKT
Sbjct: 338 ELRDKIAEHGVGSEAEARAMLRASLIDACRPDLDRSIKAMPYEGKPAVVLVVGVNGTGKT 397

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T  GKL++ +   G KV+L A DTFR+AA DQL+ W  R  A+ V    G+D A++A++A
Sbjct: 398 TTTGKLARVLVSMGHKVILGAADTFRAAAADQLETWGRRVGAETVRGAEGADPASIAFDA 457

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +   ++ DV+++DTAGRLH ++ LM  +GK+ RV+++        VL VLDAT GQN 
Sbjct: 458 VAKGVERQADVVLVDTAGRLHTSTGLMDQLGKVKRVVEKK--AVVDEVLLVLDATVGQNG 515

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           ++Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + 
Sbjct: 516 MQQARIFREVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEG 575

Query: 306 FSAVITG 312
           F   + G
Sbjct: 576 FVDALLG 582


>gi|271969191|ref|YP_003343387.1| cell division membrane protein [Streptosporangium roseum DSM 43021]
 gi|270512366|gb|ACZ90644.1| cell division membrane protein [Streptosporangium roseum DSM 43021]
          Length = 394

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 126/311 (40%), Positives = 185/311 (59%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   S   + +L    A +   L +G+ D++S  RLDD   +E+E+ LI +D+GVA  +
Sbjct: 85  EVPPPSAGRMVRLRARLARSQSTLGKGLLDLLSRDRLDDDTWDEIEETLITADVGVAPTR 144

Query: 65  KIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNG 121
            +VEEL T+           +  +   EL+ ++ + L +  +      RP V+LVVGVNG
Sbjct: 145 AMVEELRTRVKVLGSRSPEEVRGLLKEELLTQLGVDLDRTLHVKPHGERPAVVLVVGVNG 204

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G KV+L A DTFR+AA DQL+ W DR  A+ V    G D A++
Sbjct: 205 TGKTTTTGKLARSLIGDGNKVVLGAADTFRAAAADQLQTWGDRVGAEVVRGPEGGDPASI 264

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A  +    KVDV+I+DTAGRLH  + LM  +GK+ RV+++        VL VLDATT
Sbjct: 265 AFDAVAKGIEDKVDVVIVDTAGRLHTKTGLMDELGKVKRVIEKKAT--VDEVLLVLDATT 322

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN +RQ  +F  V   TG+ +TK+DGTA+GG +I +     +PV  +G+GEG +DL PF
Sbjct: 323 GQNGMRQARVFAEVVDVTGIALTKLDGTAKGGIIISVQRELGVPVKLVGLGEGPDDLAPF 382

Query: 302 VAKDFSAVITG 312
            A+ F   + G
Sbjct: 383 DAEVFVDTLLG 393


>gi|225683542|gb|EEH21826.1| signal recognition particle 54 kDa protein [Paracoccidioides
           brasiliensis Pb03]
          Length = 500

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 134/281 (47%), Gaps = 18/281 (6%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTK--------RYAKDVSVQRVLYDVSELIHKML 96
           + +E+   L+ +D+ V + Q + + + +            K   +Q+ ++D    +  ++
Sbjct: 1   MIKEICAALLSADVNVRLVQSLRKSIKSSVQFSSLPPAVNKKRLIQKTVFDQ---LVALV 57

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P  +PF      R +VI+ VG+ G GKTT   KL++     G +  L   DTFR+ A D
Sbjct: 58  DPHCEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARHYQTRGFRAALVCADTFRAGAFD 116

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK  A +    +  S   +D   +A E   + + ++ D++I+DT+GR    + L A + 
Sbjct: 117 QLKQNATKAKIPYYGSLTQTDPVVVAAEGVAKFKKERFDIIIVDTSGRHKQEADLFAEMT 176

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           ++   +K      P   + VLD T GQ A  Q   F A A    +I+TK DG A GGG I
Sbjct: 177 QIQTAIK------PDQTILVLDGTIGQAAEIQSSAFKATADFGAIIITKTDGAAAGGGAI 230

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
             V     P+ FLG GE + DLE F  K F   + G  D  
Sbjct: 231 SAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMGDMA 271


>gi|88855272|ref|ZP_01129937.1| signal recognition particle receptor [marine actinobacterium
           PHSC20C1]
 gi|88815800|gb|EAR25657.1| signal recognition particle receptor [marine actinobacterium
           PHSC20C1]
          Length = 289

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 111/290 (38%), Positives = 160/290 (55%), Gaps = 6/290 (2%)

Query: 25  SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
           S  L   +  + +   +D     +LED +I +D G  +   +++EL              
Sbjct: 4   SWSLSGALKSMFARDTIDAETWSDLEDAMISADFGPDITDSVIDELRASVTRFKTDDPAD 63

Query: 85  LYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           L   + E + + L  L          RP V+LVVGVNGVGKTT IGK +K +   G  V+
Sbjct: 64  LKRMLRETLEERLARLDPTLTLSA--RPAVVLVVGVNGVGKTTTIGKFAKFLVGHGRTVV 121

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           + A DTFR+AA++QL  WA+R  A  V   + G D A++A++  ++AQ   +D+ IIDTA
Sbjct: 122 VGAADTFRAAAVEQLATWAERGGASIVRPQQQGQDPASVAFQTVERAQRDSIDIAIIDTA 181

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL   S LM  +GK+ RV+++    A   VL VLDATTGQN + Q E F   AG TGL+
Sbjct: 182 GRLQTKSGLMDELGKIRRVVEKQTEIA--EVLLVLDATTGQNGVAQAEAFIQHAGVTGLV 239

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +TK+DG+A+ G ++ +     IP+  +G GEGINDL  F    F   + G
Sbjct: 240 ITKLDGSAKAGFVLAVQERTGIPIKLVGQGEGINDLTGFTPHVFVQGLVG 289


>gi|325958306|ref|YP_004289772.1| signal recognition particle-docking protein FtsY [Methanobacterium
           sp. AL-21]
 gi|325329738|gb|ADZ08800.1| signal recognition particle-docking protein FtsY [Methanobacterium
           sp. AL-21]
          Length = 427

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 162/325 (49%), Gaps = 20/325 (6%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSD 57
            ++   +E +S    +T+         K GI   ++++ + +     +  ELE  L+  D
Sbjct: 108 PSKTSETEEISADETITESEEKPEEDDKSGILSFVTNKTISEKDIEDILFELEMSLLEGD 167

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFN-----WDF 107
           + + VA+ I+  + T    + +  +  + +     + + I ++L    K           
Sbjct: 168 VAMEVAETIITSVKTDLVGQKIRRRSDVAEFTREALKKAISEILDIPGKDLTSLLEEAKK 227

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S  P  I+ VG+NG GKTT I K+S    + G   ++AA DTFR+ AI+QL   AD    
Sbjct: 228 SGEPLKIMFVGINGTGKTTTIAKISTYFINKGYTPVIAASDTFRAGAIEQLTHHADNLDV 287

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +  + G+D AA+A++A   A+AK  +++++DTAGR+  N  LM  + K+ RV+K    
Sbjct: 288 KIIKHKKGADPAAVAFDAVAHARAKGKELVLVDTAGRMQTNINLMDEMKKIKRVIK---- 343

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P  ++ V DA TG +++ Q + F+      G+I+TK D  A+GG  + I    + P+ 
Sbjct: 344 --PDLIIYVGDALTGNDSVEQAKKFNDAVTVDGIILTKADADAKGGAALSIGYVIQKPIL 401

Query: 288 FLGVGEGINDLEPFVAKDFSAVITG 312
           FLGVG+  +D+  F  +     I G
Sbjct: 402 FLGVGQSYSDIIEFKPEWMVEQILG 426


>gi|297156886|gb|ADI06598.1| putative signal recognition particle receptor [Streptomyces
           bingchenggensis BCW-1]
          Length = 405

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 113/322 (35%), Positives = 172/322 (53%), Gaps = 22/322 (6%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LDD   EE+ED L+ +D+GVA  Q
Sbjct: 91  EVPEPTAGRLVRLRARLSRSQTTLGKGLLTLLSREHLDDETWEEIEDTLLTADVGVAPTQ 150

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++VE L  +     V   R   ++  L+   L+ L      +     H    VG NG  K
Sbjct: 151 ELVEGLRERVR---VLGTRTPEELRGLLRAELLQL---IGTEADRAVHTESGVGANGEEK 204

Query: 125 T--------------TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
                          T  GKL++ +   G  V+L A DTFR+AA +QL+ W +R  A  V
Sbjct: 205 PGVVMVVGVNGTGKTTTTGKLARVLVADGKSVVLGAADTFRAAAAEQLQTWGERVGARTV 264

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G D A++A++A K+  A+  DV+++DTAGRLH  + LM  +GK+ RV+++    A 
Sbjct: 265 RGPEGGDPASVAFDAVKEGIAEGADVVLVDTAGRLHTKTGLMDELGKVKRVVEKH--GAV 322

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +PV  +G
Sbjct: 323 DEVLLVLDATTGQNGLVQARVFAEVVNITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVG 382

Query: 291 VGEGINDLEPFVAKDFSAVITG 312
           +GEG +DL PF  + F   + G
Sbjct: 383 LGEGADDLAPFEPEAFVDALIG 404


>gi|21324832|dbj|BAB99455.1| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC
           13032]
          Length = 510

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 176/307 (57%), Gaps = 5/307 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +   I KL    + +     + +  I+S+  LD+   E++E +LI++D+G  +  ++V+
Sbjct: 206 PAAGRIGKLRGRLSRSQSVFGKSVLGILSAGDLDEDAWEDIEAMLIKADLGAKITARVVD 265

Query: 69  ELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKT 125
           EL  K     V  +     +  + LI      L +      +  +P V+LVVGVNG GKT
Sbjct: 266 ELRDKIAEHGVGSEAEARAMLRASLIDACRPDLDRSIKAMPYEGKPAVVLVVGVNGTGKT 325

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T  GKL++ +   G KV+L A DTFR+AA DQL+ W  R  A+ V    G+D A++A++A
Sbjct: 326 TTTGKLARVLVSMGHKVILGAADTFRAAAADQLETWGRRVGAETVRGAEGADPASIAFDA 385

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +   ++ DV+++DTAGRLH ++ LM  +GK+ RV+++        VL VLDAT GQN 
Sbjct: 386 VAKGVERQADVVLVDTAGRLHTSTGLMDQLGKVKRVVEKK--AVVDEVLLVLDATVGQNG 443

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           ++Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + 
Sbjct: 444 MQQARIFREVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEG 503

Query: 306 FSAVITG 312
           F   + G
Sbjct: 504 FVDALLG 510


>gi|330813439|ref|YP_004357678.1| signal recognition particle, subunit Ffh SRP54 [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486534|gb|AEA80939.1| signal recognition particle, subunit Ffh SRP54 [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 381

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 8/234 (3%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LK 141
            ++  V + + K+L    K  N      P  ILVVG+ G GKTT   KL+K +      K
Sbjct: 1   MIVKIVFDELVKVLGDEKKELNLKAV-PPIKILVVGLQGSGKTTTSAKLAKYLEKQYSKK 59

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            ML + D +R AA  QL++  +  S   +    G     ++  A   A     DV+I DT
Sbjct: 60  SMLVSLDIYRPAAQRQLEVLGNSNSIKTLPIMDGQFPLEISKRAINAASLSGEDVIIFDT 119

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGR   +  +M  + ++   ++      P  ++ V D+ TGQ+A+     F      + +
Sbjct: 120 AGRTQIDQQMMMELKQLENDIQ------PSEIILVADSLTGQDAVNIASEFKKTVSLSSI 173

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           I+T++DG  +GG  + +  T   P+ FLG GEGI+++E F     +  I G  D
Sbjct: 174 ILTRIDGDGKGGAALSMKSTTGCPIKFLGTGEGIDEMEVFHPDRIANRILGMGD 227


>gi|145349192|ref|XP_001419024.1| IISP family transporter: SRP receptor alpha-chain-like protein FtsY
           [Ostreococcus lucimarinus CCE9901]
 gi|144579254|gb|ABO97317.1| IISP family transporter: SRP receptor alpha-chain-like protein FtsY
           [Ostreococcus lucimarinus CCE9901]
          Length = 317

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 113/305 (37%), Positives = 173/305 (56%), Gaps = 8/305 (2%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIGVAVAQKIVEELL 71
           + ++  G + T  +L   + D+++  R++D     EELE+ L+ +D G   A ++ + + 
Sbjct: 14  VERVFNGTSKTRERLS-AVNDVLALWRMEDFDDALEELEETLLGADFGPKAATRVTDGVR 72

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTV 127
            +    +      +   +   I ++L              +  P V+LVVGVNG GKTT 
Sbjct: 73  ARVERGECKTGGDVRRALKASIVEVLTKAGDAMKIGLNETAGEPSVVLVVGVNGGGKTTT 132

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +GKLS + +++G KVM+  GDTFR+AA +QL  WA+RT A    S   +   A+ Y+A  
Sbjct: 133 LGKLSHRFAESGAKVMMVPGDTFRAAAAEQLATWAERTGAVMSDSPPNTKPGAVCYKAVD 192

Query: 188 QAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +A A+  VDV++ DT+GRLHNNS LM  +  +   + +  P APH VL VLD TTG N L
Sbjct: 193 EACARGDVDVVLADTSGRLHNNSQLMDELVGVKNSISKRLPSAPHEVLLVLDGTTGLNML 252

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            Q  +F+   G TG+I+TK+DGT+RGG ++ +V    IPV F+GVGE + DL+ F A  F
Sbjct: 253 NQARVFNEAVGVTGIILTKLDGTSRGGAVVSVVDELGIPVKFVGVGESMQDLQSFDAVGF 312

Query: 307 SAVIT 311
              + 
Sbjct: 313 VDALF 317


>gi|269860268|ref|XP_002649856.1| signal recognition particle subunit FFH/SRP54 [Enterocytozoon
           bieneusi H348]
 gi|220066696|gb|EED44169.1| signal recognition particle subunit FFH/SRP54 [Enterocytozoon
           bieneusi H348]
          Length = 475

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 144/307 (46%), Gaps = 22/307 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  +   + ++    ++ D     + +++   L+++++      ++ + L  K   
Sbjct: 9   LKDLGNFIGNRLQNLFC-VQITDSVISNLIKDICTQLLQNNVNPKYVFELRKNLNQKINN 67

Query: 77  K--DVSVQRVLYDVSEL----IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           +  + + +  +  + +     + +++ P   P+        HVI+ VG+ G GKTT I K
Sbjct: 68  QISNQTNKNKIKIIQQTVFDCLSELIDPQVSPYKIS-KGEQHVIVFVGLQGSGKTTSICK 126

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD----AAALAYEAF 186
            ++     G KV +   DTFR+ A DQ+K  A++ +  +  ++   +      ++A +  
Sbjct: 127 YARFYRSKGFKVGIVCADTFRAGAYDQIKQNANKINVAYWGNQDEDNTEVDPVSIARKGV 186

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
              +    +++++DT+GR   +  L   I  ++  +       P++++ V+DA  GQ+A 
Sbjct: 187 SHFKRHDYELILVDTSGRHVQSEDLFLEIQNLVTSIN------PNNIIFVIDAGIGQSAE 240

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            QV+ F       G+I+TK+DG  + GG +  +   K PV F+G GE + D E F +K F
Sbjct: 241 DQVQGFKKAINIGGIILTKIDGAEKAGGALSSIAVTKCPVEFIGTGEKMEDFERFNSKIF 300

Query: 307 SAVITGC 313
            + + G 
Sbjct: 301 ISKLLGI 307


>gi|226365990|ref|YP_002783773.1| signal recognition particle receptor [Rhodococcus opacus B4]
 gi|226244480|dbj|BAH54828.1| signal recognition particle receptor [Rhodococcus opacus B4]
          Length = 474

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 112/310 (36%), Positives = 173/310 (55%), Gaps = 11/310 (3%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +   + +L    + +   + + +  ++    LD+   EE+ED L+ +D+G A   KIV 
Sbjct: 170 PTEGRLDRLRGRLSRSQSAVGKSLLGLLGGGDLDEDSWEEVEDTLLIADLGSATTTKIVT 229

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGV 122
            L  +  ++ V  +    D   L+ ++L+   +P              P V+LVVGVNG 
Sbjct: 230 SLREQMASRSVRTE---ADARALLREVLVAELRPELDRSIRALPHDDHPAVLLVVGVNGT 286

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GKL++ +   G +V+L A DTFR+AA DQL+ WA+R  A+ V  +  +D AA+A
Sbjct: 287 GKTTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQTWAERVGAEVVRGKEAADPAAVA 346

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A  +     VDV++IDTAGRLH  + LM  +GK+ RV+++        VL VLDAT G
Sbjct: 347 FDAVSKGIDNGVDVVLIDTAGRLHTKTGLMDELGKVKRVIEKKAS--VDDVLLVLDATIG 404

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF 
Sbjct: 405 QNGLAQARVFAEVVDITGVVLTKLDGTAKGGIVFQVQHELGVPVKLVGLGEGADDLAPFE 464

Query: 303 AKDFSAVITG 312
              F   + G
Sbjct: 465 PGAFVDALLG 474


>gi|145545839|ref|XP_001458603.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426424|emb|CAK91206.1| unnamed protein product [Paramecium tetraurelia]
          Length = 585

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/320 (23%), Positives = 145/320 (45%), Gaps = 35/320 (10%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTK 73
            +G      KL   I ++  +++L +     V ++ ++ L++ ++   +AQK+V+ + T 
Sbjct: 274 KQGLF---QKLTGKIQNLTGNKQLTEEDLLPVLDDFKNALMQKNVAEEIAQKLVDSIKTN 330

Query: 74  RYAKDVSVQRVLYDVSEL-----IHKMLMP------LSKPFNWDFSHRPHVILVVGVNGV 122
             A      + +    +      + ++L P      +++        +P+VI+++GVNGV
Sbjct: 331 LLATKTKAFQSIRTSVQEAMKSTLTRILTPNRHIDIIAEALRAKEKQKPYVIVIIGVNGV 390

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GK+T + KL       G  +M+AA D FR+ A++QLK                 D   +A
Sbjct: 391 GKSTTLAKLGYLFKSQGFSLMIAACDNFRAGAVEQLKTHGQCLGIPVYDRGYKDDPPEIA 450

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           Y+A ++A  KK+DV+++DTAGR+ +N  L   +  + R++   +P     VL V +A  G
Sbjct: 451 YQAIREATIKKIDVVLVDTAGRMQHNEPL---MRALSRIVTMNNP---DLVLFVGEALVG 504

Query: 243 QNALRQVEMFHAVA----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGV 291
            + + Q+  F+                 +I++K D    + G  + +      P+ F+GV
Sbjct: 505 NDGVDQLVNFNKALIVNSPKDNVREIDAIILSKFDTVDEKVGAALSLTSATGKPILFVGV 564

Query: 292 GEGINDLEPFVAKDFSAVIT 311
           G+    L+          + 
Sbjct: 565 GQKYTHLKKLNVNTVVRALL 584


>gi|213964646|ref|ZP_03392846.1| signal recognition particle GTPase [Corynebacterium amycolatum
           SK46]
 gi|213952839|gb|EEB64221.1| signal recognition particle GTPase [Corynebacterium amycolatum
           SK46]
          Length = 515

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 109/293 (37%), Positives = 166/293 (56%), Gaps = 11/293 (3%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
             + + +  I+ +  LD+   EE+ED+L+ +D+G A  Q++V++L  +  ++ VS +   
Sbjct: 225 NAIGQSVLGILGAGDLDEDAWEEVEDILVMADLGAAATQRVVDKLRERIASQKVSTEEQ- 283

Query: 86  YDVSELIHKMLMPLSKP-FNWDFS-----HRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
                L+ ++L+   KP  +          +P VILVVGVNG GKTT  GKL++ +   G
Sbjct: 284 --ARALLREVLIEECKPEMDRSIRALPHEGKPAVILVVGVNGTGKTTTTGKLARVLVAGG 341

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            +V+L A DTFR+AA DQL+ W  R  A+ V    G+D A++A+EA         DV++I
Sbjct: 342 HRVVLGAADTFRAAAADQLETWGRRVGAETVRGAEGADPASIAFEAVAHGIESGADVVLI 401

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH    LM  + K+ RV+++        V+ VLDAT GQN L Q   F  V   T
Sbjct: 402 DTAGRLHTKVGLMDQLDKIKRVVEKK--AQVDEVILVLDATVGQNGLLQARTFRDVVDIT 459

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           G+ +TK+DGTA+GG +  +     +PV  +G+GEG + L PF  + F   + G
Sbjct: 460 GVALTKLDGTAKGGIVFQVQNELGVPVKLVGLGEGADHLAPFEPESFVDALLG 512


>gi|255660175|ref|ZP_05405584.1| signal recognition particle protein [Mycoplasma genitalium G37]
          Length = 416

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 10/266 (3%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHR 110
           ++ +D+ + V +  ++ +  K   + +   + L    +  +  +++  LS+P       R
Sbjct: 1   MLDADVNLLVVKNFIKAIRDKTVGQTIEPGQDLQKSLLKTIKTELINILSQPNQELNEKR 60

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P  I++VG+ G GKTT  GKL+  +      K ML   D +R AAI+QL+  + +T++ F
Sbjct: 61  PLKIMMVGLQGSGKTTTCGKLAYWLEKKYKQKTMLVGLDIYRPAAIEQLETLSQQTNSVF 120

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                    A     A    +  K   +I DTAGRL  N  LM  +  +   L       
Sbjct: 121 FAQGT-QPVAKTTKAALSAFKTAKCQTIICDTAGRLQTNETLMDELVSVKNELN------ 173

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  ++ V+D  +GQ  +   + FH     TG I++K+D  AR G  + +    ++P+  +
Sbjct: 174 PDEIIMVVDGLSGQEIINVAQTFHKRLKLTGFIISKLDSDARAGAALSLASLLQVPIKLI 233

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           GV E ++ LE F  +  +  I G  D
Sbjct: 234 GVSEKLDGLEQFHPERIANRILGLGD 259


>gi|109947230|ref|YP_664458.1| cell division protein [Helicobacter acinonychis str. Sheeba]
 gi|109714451|emb|CAJ99459.1| cell division protein [Helicobacter acinonychis str. Sheeba]
          Length = 293

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 97/287 (33%), Positives = 156/287 (54%), Gaps = 7/287 (2%)

Query: 26  LKLKEGITDIISSRRLDDGV-REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
            K+   I    +  +  + V +EELE++LI  DI   + + +++ L      K + V  +
Sbjct: 6   KKIVNKIKGEEAKEKKRESVPKEELEEILIGFDIQYDLIESLLKHLGDLITPKQLEVALL 65

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
            +   E  +       K      + +P V L+VGVNG GKTT I KL+K       K +L
Sbjct: 66  RFVRGESYYD------KTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALL 119

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            AGDTFR+AA+ QL++W  + +   + ++ GSD ++LAY   + A AK +D + IDTAGR
Sbjct: 120 GAGDTFRAAAVKQLQLWGKKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGR 179

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LHN + L   + K+ R   ++   AP     +LD T G + L Q ++FH      G+IMT
Sbjct: 180 LHNQTNLKNELSKIARTCSKVLKDAPFYKFLILDGTQGSSGLTQAKIFHETLALDGVIMT 239

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F   + 
Sbjct: 240 KLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEECFIEDLV 286


>gi|332297636|ref|YP_004439558.1| signal recognition particle-docking protein FtsY [Treponema
           brennaborense DSM 12168]
 gi|332180739|gb|AEE16427.1| signal recognition particle-docking protein FtsY [Treponema
           brennaborense DSM 12168]
          Length = 292

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 100/289 (34%), Positives = 151/289 (52%), Gaps = 4/289 (1%)

Query: 27  KLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
              + I ++     + D+   +EL D+LI  D+G      IVE+L  +++ +D+ +    
Sbjct: 5   SFSQKIKNLFGIHPVKDESFFDELADILIEGDLGAKNVFDIVEKL--QKHCRDLHISEER 62

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVML 144
             ++EL   +L  + K      + + +V L++GVNGVGKTT   KL+          V+L
Sbjct: 63  EIIAELKRMLLEFVKKVELAPDAEKVNVYLLLGVNGVGKTTSAAKLASFYDGMGKYNVVL 122

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+AAIDQL I  +R     V  + GSD +A+ ++A     +K   ++I DTAGR
Sbjct: 123 AAADTFRAAAIDQLLIHGERLGIRVVAHQHGSDPSAVVFDAADAVASKGGGLVIADTAGR 182

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LHN   L+  + K+ R+         +  + V+D TTGQNA RQ E+FH   G   +I+T
Sbjct: 183 LHNKENLVRELQKIDRIASSKADAGCYKKILVVDGTTGQNAFRQAEVFHEAVGLDAVILT 242

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           K D TA+GG    I     IPV F+  GE  ND+ PF  + +     G 
Sbjct: 243 KYDSTAKGGIAAAIGHDLGIPVAFVCFGESYNDIRPFEPERYVDEFLGI 291


>gi|294815360|ref|ZP_06774003.1| Signal recognition particle [Streptomyces clavuligerus ATCC 27064]
 gi|326443713|ref|ZP_08218447.1| signal recognition particle-docking protein FtsY [Streptomyces
           clavuligerus ATCC 27064]
 gi|294327959|gb|EFG09602.1| Signal recognition particle [Streptomyces clavuligerus ATCC 27064]
          Length = 409

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 176/311 (56%), Gaps = 5/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    +   + +L    A +   L +G+  ++S   LD+   EE+E+ L+ +D+GVA  Q
Sbjct: 100 ETPEPAAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLTADVGVAPTQ 159

Query: 65  KIVEELLTKRY--AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
           ++VE L  +          +       EL+  +   L +    +     P V++VVGVNG
Sbjct: 160 ELVERLRERVKVLGTRTPDELRTLLREELLTLVGTDLDRAVKTESGLDTPGVVMVVGVNG 219

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 220 TGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 279

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++  P     +L VLDATT
Sbjct: 280 AFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGP--LDEILLVLDATT 337

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF
Sbjct: 338 GQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPF 397

Query: 302 VAKDFSAVITG 312
             + F   + G
Sbjct: 398 EPEAFVDALIG 408


>gi|317506050|ref|ZP_07963879.1| signal recognition particle-docking protein FtsY [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255654|gb|EFV14895.1| signal recognition particle-docking protein FtsY [Segniliparus
           rugosus ATCC BAA-974]
          Length = 505

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 167/307 (54%), Gaps = 13/307 (4%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               L    A +   +   +  ++    LD+   E++E  L+ +D+G +  + ++E    
Sbjct: 205 RWGNLRGRLARSQNSVGRALVGLLGGGDLDEESWEDVEATLLTADLGASTTEGVIE---- 260

Query: 73  K-RYAKDVSVQRVLYDVSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGVGKT 125
           K R A   S  R   +   ++  +L+   KP           + RP V+LVVGVNG GKT
Sbjct: 261 KLREALARSEVRSEAEARAVLKDVLVAELKPEFDRSVRALPHADRPSVVLVVGVNGTGKT 320

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T  GKL++ +   G +V+L A DTFR+AA++QLK W  R  A+ V    G+D A++A+EA
Sbjct: 321 TTTGKLARVLVADGRRVLLGAADTFRAAAVEQLKTWGQRVGAEVVAGAEGADPASVAFEA 380

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +      DV++IDTAGRLH  + LM  +GK+ RV++R        V+ VLDAT GQN 
Sbjct: 381 VSRGVEAGADVVLIDTAGRLHTKTGLMDELGKIKRVVERKAG--VDEVILVLDATIGQNG 438

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           L Q ++F  V   TG+ +TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    
Sbjct: 439 LLQAKVFSEVVDVTGVALTKLDGTAKGGIVFAVQKELGVPVKLVGLGEGKDDLAPFEPNA 498

Query: 306 FSAVITG 312
           F   + G
Sbjct: 499 FVDALLG 505


>gi|227504760|ref|ZP_03934809.1| signal recognition particle GTPase [Corynebacterium striatum ATCC
           6940]
 gi|227198610|gb|EEI78658.1| signal recognition particle GTPase [Corynebacterium striatum ATCC
           6940]
          Length = 559

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 112/290 (38%), Positives = 165/290 (56%), Gaps = 5/290 (1%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
             + +G+  I+S+  LD+   EE+ED LI +D+G     K+ E L  K   + VS +   
Sbjct: 270 NAIGQGLLGILSAGDLDEDAWEEIEDTLIMADLGTKSTLKVTESLRDKIAERGVSSEEEA 329

Query: 86  YD-VSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
              + E + +   P             +P VI+VVGVNG GKTT  GKL++ +   G KV
Sbjct: 330 RAMLRESLIEAGHPEMDRSIKAMPNEGKPAVIMVVGVNGTGKTTTTGKLARVLVAMGHKV 389

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA DQL+ W  R  A  V  + G+D A++A++A      + VDV+++DTA
Sbjct: 390 LLGAADTFRAAAADQLETWGRRVGATTVRGKEGADPASVAFDAVAAGVDQGVDVVLVDTA 449

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH +  LM  +GK+ RV+++        VL VLDAT GQN L Q  +F  V   TG++
Sbjct: 450 GRLHTSVDLMDQLGKVKRVVEKKAE--VDEVLLVLDATVGQNGLTQARIFREVVDITGVV 507

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 508 LTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 557


>gi|328794005|ref|XP_003251960.1| PREDICTED: putative methylthiotransferase RP416-like, partial [Apis
           mellifera]
          Length = 447

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 89/204 (43%), Positives = 135/204 (66%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           +G + ++ KL   +T + + RRLDD   E+LED+LI +D G  VA+ ++E     R+  +
Sbjct: 243 RGLSRSTQKLGNNLTSVFTKRRLDDESLEQLEDILISADFGPEVAENVIESFRKTRFGSE 302

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           V+ Q +   ++E I K+L P++ PF  +   +PHV+L+VGVNG GKTT IGK+ +  +D 
Sbjct: 303 VTDQEIKQALAEEISKILKPVAVPFQPNPDLKPHVVLMVGVNGTGKTTTIGKMGQFFTDQ 362

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           GLKVM+ AGDTFR+AA++QL++W DR     +  +  +DAA LA+EA K+A+ ++ D+L+
Sbjct: 363 GLKVMMVAGDTFRAAAVEQLQVWGDRVGVSVISGKPQADAAGLAFEALKRAKNEQTDLLL 422

Query: 199 IDTAGRLHNNSILMAGIGKMIRVL 222
           IDTAGRLHN S LM  + K     
Sbjct: 423 IDTAGRLHNKSALMEELAKNHSCH 446


>gi|320008304|gb|ADW03154.1| signal recognition particle-docking protein FtsY [Streptomyces
           flavogriseus ATCC 33331]
          Length = 401

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 110/327 (33%), Positives = 166/327 (50%), Gaps = 37/327 (11%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    A +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 92  EVPEPTAGRLVRLRARLARSQNSLGKGLLSLLSRDNLDEDTWEEIEDTLLTADVGVAPTQ 151

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGV 122
           ++VE L  +           L   + E +  +L P L +    +                
Sbjct: 152 ELVERLRERVRVLGTRTPDELRTLLREELVTLLGPELDREVKTE---------------- 195

Query: 123 GKTTV-----------------IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           G  T                   GKL++ +   G  V+L A DTFR+AA DQL+ W +R 
Sbjct: 196 GGDTTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERV 255

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
            A  V    G D A++A++A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++ 
Sbjct: 256 GARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKH 315

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P     VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG +I +     +P
Sbjct: 316 GP--LDEVLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVP 373

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVITG 312
           V  +G+GEG +DL PF    F   + G
Sbjct: 374 VKLIGLGEGPDDLAPFEPGAFVDALIG 400


>gi|229581681|ref|YP_002840080.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus Y.N.15.51]
 gi|228012397|gb|ACP48158.1| signal recognition particle-docking protein FtsY [Sulfolobus
           islandicus Y.N.15.51]
          Length = 208

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 121/208 (58%), Gaps = 6/208 (2%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
               S +P++I+  G+NGVGKTT I K +  +   GL  +++A DTFR+AA +QL+I A 
Sbjct: 6   EIKKSTKPYIIIFFGINGVGKTTTIAKFAYILKKNGLSCIISASDTFRAAAQEQLEIHAR 65

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                 +  + G D A++AY+  + A+++ +DV++IDTAGR+H ++ L+  + +++ +  
Sbjct: 66  NLEIPLIKGKYGGDPASVAYDTIRAAKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNI-- 123

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                 P+  + VLD+  G +AL Q + F    G   +I+TK+D   +GG ++ +     
Sbjct: 124 ----TRPNLKILVLDSLGGNDALEQAKYFENNVGFDLVILTKVDADVKGGVILSLAYELN 179

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            PV +LGVG+  +DL PF A+ F   + 
Sbjct: 180 KPVGYLGVGQTYDDLIPFNAEWFIQRLF 207


>gi|302525136|ref|ZP_07277478.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           AA4]
 gi|302434031|gb|EFL05847.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           AA4]
          Length = 447

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 110/316 (34%), Positives = 176/316 (55%), Gaps = 10/316 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +++ S S   + +L    + +     + +  ++    LD+   +++ED L+ +D+G A  
Sbjct: 135 EEIESPS-GRLERLRGRLSKSRSVFGQSLLGLLGGGDLDEDSWQDVEDTLLMADLGAATT 193

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSK------PFNWDFSHRPHVILV 116
            +IV+ L  +   + V       ++  E++   L   ++      P   D    P V+LV
Sbjct: 194 TQIVDRLRDELNRRAVRTSAEARELLHEVLTAALSTDAERAVRALPHEVDGKKEPAVVLV 253

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
            GVNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  +  + G+
Sbjct: 254 AGVNGTGKTTTTGKLARVLVAQGGTVVLGAADTFRAAAADQLQTWGERVGASVIRGKEGA 313

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+A++A KQ  ++ VD +++DTAGRLH  + LM  +GK+ RV+++        VL V
Sbjct: 314 DPAAVAFDAVKQGISEGVDTVLVDTAGRLHTKTGLMDELGKVKRVVEKQ--ARVDEVLLV 371

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQN L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +
Sbjct: 372 LDATTGQNGLAQARVFAEVIDVTGIVLTKLDGTAKGGIVFQVQKELGVPVKLVGLGEGPD 431

Query: 297 DLEPFVAKDFSAVITG 312
           DL PF    F   + G
Sbjct: 432 DLAPFEPGAFVDALLG 447


>gi|322802263|gb|EFZ22659.1| hypothetical protein SINV_03515 [Solenopsis invicta]
          Length = 275

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 126/267 (47%), Gaps = 16/267 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +K+ E +      
Sbjct: 3   LADLGRKITSALRSLSNATVINEEVLNSMLKEICAALLEADVNIRLVKKLRENVRQVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ +R++   V + + K++ P  K +      RP+VI+ VG+ G GKTT   KL
Sbjct: 63  EDMAGGLNKRRMIQSAVFKELVKLIDPGVKAYQ-PVKGRPNVIMFVGLQGSGKTTTCTKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        K  L   DTFR+ A DQ+K  A +    F  S    D  A+A +     + 
Sbjct: 122 AYHYLKKNWKACLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVAIAQDGVDMFKK 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  +++I+DT+GR      L   +      L+  +   P +++ V+DAT GQ    Q + 
Sbjct: 182 EGYEIIIVDTSGRHKQEESLFEEM------LQVANAVQPDNIIFVMDATIGQACEAQAKA 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPI 278
           F        +I+TK+DG A+GGG +  
Sbjct: 236 FKERVNVGSIIITKLDGHAKGGGALSA 262


>gi|222640745|gb|EEE68877.1| hypothetical protein OsJ_27689 [Oryza sativa Japonica Group]
          Length = 1103

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 86/331 (25%), Positives = 147/331 (44%), Gaps = 38/331 (11%)

Query: 3    NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
            N   + +   W   + K  A           +++    +     + L+D L+  ++   +
Sbjct: 788  NSGASQKKKGWFSSMFKSIAG---------NNVLEKSDIQPA-LKALKDRLMTKNVAEEI 837

Query: 63   AQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN----------WDFSHRP 111
            A+K+ E +      K + S  R+   V   + + L+ +  P                 +P
Sbjct: 838  AEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVHAAKERGKP 897

Query: 112  HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            +VI+ VGVNGVGK+T + K++  +    L V LAA DTFRS A++QL+  A R       
Sbjct: 898  YVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFRSGAVEQLRTHARRLQIPIFE 957

Query: 172  SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                 D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K+I +      ++P 
Sbjct: 958  KGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINL------NSPD 1011

Query: 232  SVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVV 280
             VL V +A  G +A+ Q+  F+                G+++TK D    + G  + +V 
Sbjct: 1012 LVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFDTIDDKVGAALSMVY 1071

Query: 281  THKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                PV F+G G+   DL+    K     + 
Sbjct: 1072 ISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 1102


>gi|295698250|ref|YP_003602905.1| signal recognition particle-docking protein FtsY [Candidatus Riesia
           pediculicola USDA]
 gi|291157249|gb|ADD79694.1| signal recognition particle-docking protein FtsY [Candidatus Riesia
           pediculicola USDA]
          Length = 310

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 161/306 (52%), Gaps = 4/306 (1%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68
                 +  K        LK    +       ++     E+E+ L+  DIG++  + I++
Sbjct: 2   KEKLFYQFKKKIIQVKKNLKNSFINFFKKNNEINIDFFNEVEEQLLSLDIGISTTKLIID 61

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW--DFSHRPHVILVVGVNGVGKTT 126
           ++  +   ++ +    +Y + +   + ++ LSK   +         +IL  GVNGVGKT 
Sbjct: 62  QIKKQINTQNFNEIDKIYSIIKRTMQDILNLSKKNCYISKKVDSLKIILFFGVNGVGKTI 121

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            + KL+      G K  +   DTFR+A+I+Q KI +D+ +     S+   DAA++ +++ 
Sbjct: 122 SVFKLANTYMKKGKKTAVVCADTFRAASIEQTKILSDQYNIPIFFSKNKKDAASVVFDSI 181

Query: 187 KQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           K  + +K +  +IIDTAGRL N   L+  + K+ RV+K+L        + VLD+T GQN+
Sbjct: 182 KFLKKEKSIQFIIIDTAGRLENKINLIEELRKITRVIKKLYDQPYFEKILVLDSTIGQNS 241

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           + Q ++F+     TG+ +TK+DGTARGG + PI+   KIP+ ++G GE IND++ F  + 
Sbjct: 242 IHQAKIFYNSVQPTGIFLTKLDGTARGGIIFPIINFFKIPIKYIGFGESINDIKEFNQEH 301

Query: 306 FSAVIT 311
           F   + 
Sbjct: 302 FINSLF 307


>gi|242055585|ref|XP_002456938.1| hypothetical protein SORBIDRAFT_03g045950 [Sorghum bicolor]
 gi|241928913|gb|EES02058.1| hypothetical protein SORBIDRAFT_03g045950 [Sorghum bicolor]
          Length = 487

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 127/296 (42%), Gaps = 31/296 (10%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRY-----AKDVSVQRVLY-DVSELIHKMLMPL 99
             ++   L+++D+     + +   + +        A     +R +   V + + +ML P 
Sbjct: 32  LNDVSRALLQADVRFETVRAVQASIGSAVVNLQSLAAGTDRRRAIKHAVVDELRRMLDPA 91

Query: 100 SKPFN---------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +                     V++ VG+ G GKTT   K +      G    L   DTF
Sbjct: 92  AGGGTGKPPPFFVPRKGRKPASVVMFVGLQGSGKTTTCVKYADYHRRTGFSPALVCADTF 151

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF-------KQAQAKKVDVLIIDTAG 203
           R+ A+DQL+  A +    F  S   SD   +A E         + A A+  D++++DT+G
Sbjct: 152 RAGALDQLRQNAAKAGIPFYGSYTESDPVRVAVEGVDRFRNADQAAAAEGCDLIVVDTSG 211

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI- 262
           R    + L+  + ++           P  V+ V+DAT GQ A  Q   F        +I 
Sbjct: 212 RHSQEAALLEEMRQLAEA------TRPDLVVLVMDATIGQAAFDQALAFKQSVEVGAVIV 265

Query: 263 MTKMDGTAR-GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA-VITGCLDY 316
           +TKMDG A+ GGG +  V   K PV F+G GE I DLE F A+ F +  + G  D 
Sbjct: 266 VTKMDGHAKGGGGALSAVAATKSPVIFIGTGEHIADLEAFDARSFVSRRLLGMGDL 321


>gi|311739745|ref|ZP_07713580.1| cell division protein FtsY [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305561|gb|EFQ81629.1| cell division protein FtsY [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 660

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 110/290 (37%), Positives = 168/290 (57%), Gaps = 5/290 (1%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
             + +G+  I+S+  LD+   EE+ED LI +D+G     K+ + L  K   + VS +   
Sbjct: 371 NAIGQGLMGILSAGDLDEDAWEEVEDTLIMADLGTKSTMKVTDSLREKIAERGVSSEDEA 430

Query: 86  YD-VSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
              + E + +   P             +P +++VVGVNG GKTT  GKL++ +   G KV
Sbjct: 431 RAMLRECLIEAGHPEMDRSIKAMPNEGKPAIVMVVGVNGTGKTTTTGKLARVLVSMGHKV 490

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA DQL+ W  R  AD V  + G+D A++A++A      ++VDV+++DTA
Sbjct: 491 LLGAADTFRAAAADQLETWGRRVGADTVRGKEGADPASVAFDAVATGVEQQVDVVLVDTA 550

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH ++ LM  +GK+ RV+++        VL VLDAT GQN L Q  +F  V   TG++
Sbjct: 551 GRLHTSTDLMDQLGKVKRVVEKK--TDVDEVLLVLDATVGQNGLTQARIFREVVDITGVV 608

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 609 LTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 658


>gi|308808356|ref|XP_003081488.1| signal recognition particle 54kDa subunit (ISS) [Ostreococcus
           tauri]
 gi|116059951|emb|CAL56010.1| signal recognition particle 54kDa subunit (ISS) [Ostreococcus
           tauri]
          Length = 559

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 76/363 (20%), Positives = 138/363 (38%), Gaps = 73/363 (20%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  +   +  + +   +DD       +E+ + L+ +D+ V +  ++ + ++     
Sbjct: 3   LNDLGNTITGALRRLQTRVVIDDDAVDGALKEICNALLSADVAVGLVVRLKKNVMRAVET 62

Query: 77  KDVSV-------QRVLYDVSELIHKMLMPLSKPFNWDF---------------------- 107
           +  S        + +   V + +  +L    +  + +                       
Sbjct: 63  ERASDAGGTRTRRTLERAVFKELANLLNGGGREDDQETPVSGPXXXXXXXKGSRAIGGKR 122

Query: 108 ------------------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
                               + +V++ VG+ G GKTT   K +   +  G K  L   DT
Sbjct: 123 GREGGRRGEGNAPRWAPKKGKRNVVMFVGLQGAGKTTTCTKFAHYYARKGFKAALVCADT 182

Query: 150 FRSAAIDQLKIWADRTSADFVCSEI----------------GSDAAALAYEAFKQAQAKK 193
           FR+ A D            F   E                  +  A +A     + + +K
Sbjct: 183 FRAGAFDXXXXXXXVRPGPFGPVEPKRDQRPKIPVLRLVHPRAMPAKIARGWVARFEEEK 242

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +D++I+DT+GR      L   + ++  V    DP      + V+D++ GQ+A  Q   F 
Sbjct: 243 MDLIIVDTSGRHRQEEALFEEMREIANVT---DPTM---TIFVMDSSIGQSAADQANAFA 296

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +     G+IMTK+DG A+GGG I  V   K P+ F+G GE I ++EPF A  F + + G 
Sbjct: 297 STVDVGGVIMTKLDGHAKGGGAISAVSETKAPILFIGTGEHIGEMEPFDANSFVSKLLGM 356

Query: 314 LDY 316
            D 
Sbjct: 357 GDM 359


>gi|15239909|ref|NP_199761.1| signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B)
           [Arabidopsis thaliana]
 gi|10177616|dbj|BAB10763.1| SRP54 (signal recognition particle 54 KDa) protein [Arabidopsis
           thaliana]
 gi|332008438|gb|AED95821.1| Signal recognition particle SRP54 subunit protein [Arabidopsis
           thaliana]
          Length = 497

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 142/308 (46%), Gaps = 20/308 (6%)

Query: 21  FASTSLKLKEGITD-----IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            A    ++   I       II  + L+D + E +   L++SD+   + +++   +     
Sbjct: 3   LAELGGRIMSAIQKMNNVTIIDEKALNDCLNE-ITRALLQSDVSFPLVKEMQTNIKKIVN 61

Query: 76  AKDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG--KTTVI 128
            +D++       + E      + KML P    F    + +P V++ VG+ G    K  ++
Sbjct: 62  LEDLAAGHNKRRIIEQAIFSELCKMLDPGKSAFAPKKA-KPSVVMFVGLQGEVLEKPQLV 120

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             +   +   G K  L   DTFR+ A DQLK  A ++   +  S  GSD   +A E   +
Sbjct: 121 PSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDR 180

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +  D++I+DT+GR    + L   + ++    K      P  V+ V+D++ GQ A  Q
Sbjct: 181 FKKENCDLIIVDTSGRHKQQASLFEEMRQISEATK------PDLVIFVMDSSIGQTAFEQ 234

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
              F        +I+TKMDG A+GGG +  V   K PV F+G GE +++ E F AK F +
Sbjct: 235 ARAFKQTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVS 294

Query: 309 VITGCLDY 316
            + G  D 
Sbjct: 295 RLLGNGDM 302


>gi|290994923|ref|XP_002680081.1| predicted protein [Naegleria gruberi]
 gi|284093700|gb|EFC47337.1| predicted protein [Naegleria gruberi]
          Length = 470

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 141/301 (46%), Gaps = 19/301 (6%)

Query: 28  LKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLT----KRYAKDV 79
           + +  T++   + L     EE    +   L+ +D+  +  + I+  +       + A+++
Sbjct: 1   MSDAFTNLFKKKTLTKEDVEEAMQKVRVALLDADVAESENKGILSRIAKWVGPNQKAEEL 60

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
                +Y  V + + ++L     P      +    VI+V G+ G GKTT   KL+ ++  
Sbjct: 61  PKSATVYLMVMDRLSELLGGGVAPLELIPSTEGKSVIMVTGIQGSGKTTSSAKLALQLKR 120

Query: 138 A-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--V 194
               +V+L + DT+R AA  QL+  A +   + +      +   +A  A +         
Sbjct: 121 KENRRVLLVSLDTYRPAAQMQLQTLAQQIQVESLPIIPEQNPIEIAKRAMEYVGPNGEQF 180

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D +I DTAGR+H +  LM  + ++  +++      P+  L V D+  G +A+     FH 
Sbjct: 181 DTVIFDTAGRMHIDEQLMTELEELRAIVQ------PNETLLVADSMLGNDAVNIATQFHD 234

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
             G +G+++T+MDGT+ GG  I +     + V ++G+GE ++DLE F  +  +  I G  
Sbjct: 235 RVGLSGIVLTRMDGTSSGGCAISMKQVVGLSVKYIGIGERMDDLETFDPQSLAKRILGGG 294

Query: 315 D 315
           D
Sbjct: 295 D 295


>gi|111023488|ref|YP_706460.1| cell division protein [Rhodococcus jostii RHA1]
 gi|110823018|gb|ABG98302.1| cell division protein [Rhodococcus jostii RHA1]
          Length = 467

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 112/310 (36%), Positives = 173/310 (55%), Gaps = 11/310 (3%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +   + +L    + +   + + +  ++    LD+   EE+ED L+ +D+G A   KIV 
Sbjct: 163 PTEGRLDRLRGRLSRSQSAVGKSLLGLLGGGDLDEDSWEEVEDTLLIADLGSATTTKIVT 222

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF------NWDFSHRPHVILVVGVNGV 122
            L  +  ++ V  +    D   L+ ++L+   +P              P V+LVVGVNG 
Sbjct: 223 SLREQMASRSVRTE---ADARALLREVLVAELRPELDRSIRALPHDDHPAVLLVVGVNGT 279

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GKL++ +   G +V+L A DTFR+AA DQL+ WA+R  A+ V  +  +D AA+A
Sbjct: 280 GKTTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQTWAERVGAEVVRGKEAADPAAVA 339

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A  +     VDV++IDTAGRLH  + LM  +GK+ RV+++        VL VLDAT G
Sbjct: 340 FDAVAKGIDNGVDVVLIDTAGRLHTKTGLMDELGKVKRVIEKKAS--VDDVLLVLDATIG 397

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF 
Sbjct: 398 QNGLAQARVFAEVVDITGVVLTKLDGTAKGGIVFQVQHELGVPVKLVGLGEGADDLAPFE 457

Query: 303 AKDFSAVITG 312
              F   + G
Sbjct: 458 PGAFVDALLG 467


>gi|37362777|gb|AAQ91346.1| signal recognition particle [Lactobacillus casei]
          Length = 221

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 8/204 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I++VG+ G GKTT +GKL+  +  +   + +L AGD +R AAI+QLK    +       S
Sbjct: 1   IMMVGLQGTGKTTTVGKLANYLMKNEKARPLLIAGDIYRPAAIEQLKQIGQQLDVPVY-S 59

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E   D A +     ++A   K D ++IDTAGRL  +  LM     + RV +   P    +
Sbjct: 60  EDNQDVAEIVKHGLEEADKNKNDYVLIDTAGRLEIDEQLMDE---LKRVTEVAHP---DN 113

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L V+DA TGQ A +  E F+     TG+++TK+DG  RGG  + I     +P+ F G G
Sbjct: 114 TLLVVDAMTGQAATQVAEGFNNDLDLTGIVLTKLDGDTRGGAALSIRAVTGLPIIFTGQG 173

Query: 293 EGINDLEPFVAKDFSAVITGCLDY 316
           E + DL  F     ++ I G  D 
Sbjct: 174 EKLTDLSTFHPDRMASRILGMGDM 197


>gi|302558152|ref|ZP_07310494.1| signal recognition particle FtsY [Streptomyces griseoflavus Tu4000]
 gi|302475770|gb|EFL38863.1| signal recognition particle FtsY [Streptomyces griseoflavus Tu4000]
          Length = 407

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 110/304 (36%), Positives = 171/304 (56%), Gaps = 5/304 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GV   Q++V+ L 
Sbjct: 105 GRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVDRLR 164

Query: 72  TKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGKTTVI 128
            +           L   + E +  ++ P         + +  P V++VVGVNG GKTT  
Sbjct: 165 ERVKVLGTRTPAELRVLLREELITLVGPEMDRTVHTENAAGGPGVVMVVGVNGTGKTTTT 224

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V      D A++A++A K+
Sbjct: 225 GKLARVLVADGNTVVLGAADTFRAAAADQLQTWGERVGAHTVRGPEAGDPASVAFDAVKE 284

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +    D ++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATTGQN L Q
Sbjct: 285 GKEMAADAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAP--LDEVLLVLDATTGQNGLVQ 342

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +DL PF  + F  
Sbjct: 343 ARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVD 402

Query: 309 VITG 312
            + G
Sbjct: 403 ALIG 406


>gi|325971171|ref|YP_004247362.1| signal recognition particle-docking protein FtsY [Spirochaeta sp.
           Buddy]
 gi|324026409|gb|ADY13168.1| signal recognition particle-docking protein FtsY [Spirochaeta sp.
           Buddy]
          Length = 291

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 99/290 (34%), Positives = 155/290 (53%), Gaps = 5/290 (1%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
                 +  +      D+   E LED LI  D+G  +A  I  E+     ++    Q   
Sbjct: 3   KGFGAKLKALFGMNTFDENYFEMLEDFLIEGDLGAKLAMDITSEVRKLAKSEKTKTQ--- 59

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
            D+  L+ ++L    + F+ +   +   V L++GVNGVGKTT I KL+K   + G +V+L
Sbjct: 60  KDLQLLVKRLLADKIRTFDENLDPKSLTVFLILGVNGVGKTTSIAKLAKYYQNQGKQVLL 119

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+AAIDQL++ A R     V  + GSD  ++ ++A   AQAK  +++++DTAGR
Sbjct: 120 AAADTFRAAAIDQLEVHAQRLGCRIVKQKSGSDPGSVVFDAITSAQAKGENLILVDTAGR 179

Query: 205 LHNNSILMAGIGKMIRVLK-RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           +HN   L+  + K+ +++K R      +    V+D+TTGQN + Q E+F+       LI+
Sbjct: 180 MHNKENLLRELSKIDKIVKGRGIDDVHYKKFLVIDSTTGQNGISQAELFNQAVKLDALIL 239

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           TK D  A+GG L+ I     IP+ F+G GE   D+  F   +F   + G 
Sbjct: 240 TKYDSLAKGGALVQIGEKQDIPIAFVGTGETYKDIHLFDKDEFLDTLVGL 289


>gi|302522143|ref|ZP_07274485.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           SPB78]
 gi|302431038|gb|EFL02854.1| signal recognition particle-docking protein FtsY [Streptomyces sp.
           SPB78]
          Length = 408

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 109/312 (34%), Positives = 166/312 (53%), Gaps = 6/312 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +V   +   + +L    + +   L +G+  ++S   LD+   EE+ED L+ +D+GVA  Q
Sbjct: 98  EVPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAPTQ 157

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVILVVGVNG 121
           ++VE L  +           L  +       L+               +P +++VVGVNG
Sbjct: 158 ELVERLRERVRVLGTRTTDELRTLLREELLTLVGADTDRTVHTEAAPDKPGIVMVVGVNG 217

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 218 TGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 277

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A++A K+  A+K D ++IDTAGRLH  + LM  +GK+ RV+++  P     VL VLDATT
Sbjct: 278 AFDAVKEGIAEKADAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAP--VDEVLLVLDATT 335

Query: 242 GQNALRQVEMFH-AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           GQN L            +   ++T +DGTA+GG +I +     +PV  +G+GEG +DL P
Sbjct: 336 GQNGLVSFSASSTRSCRSPAFVLTNLDGTAKGGIVIAVQRELGVPVKLIGLGEGADDLAP 395

Query: 301 FVAKDFSAVITG 312
           F    F   + G
Sbjct: 396 FEPGAFVDALIG 407


>gi|255325270|ref|ZP_05366376.1| signal recognition particle GTPase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297835|gb|EET77146.1| signal recognition particle GTPase [Corynebacterium
           tuberculostearicum SK141]
          Length = 659

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 110/290 (37%), Positives = 168/290 (57%), Gaps = 5/290 (1%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
             + +G+  I+S+  LD+   EE+ED LI +D+G     K+ + L  K   + VS +   
Sbjct: 370 NAIGQGLMGILSAGDLDEDAWEEVEDTLIMADLGTKSTMKVTDSLREKIAERGVSSEDEA 429

Query: 86  YD-VSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
              + E + +   P             +P +++VVGVNG GKTT  GKL++ +   G KV
Sbjct: 430 RAMLRECLIEAGHPEMDRSIKAMPNEGKPAIVMVVGVNGTGKTTTTGKLARVLVAMGHKV 489

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA DQL+ W  R  AD V  + G+D A++A++A      ++VDV+++DTA
Sbjct: 490 LLGAADTFRAAAADQLETWGRRVGADTVRGKEGADPASVAFDAVATGVEQQVDVVLVDTA 549

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH ++ LM  +GK+ RV+++        VL VLDAT GQN L Q  +F  V   TG++
Sbjct: 550 GRLHTSTDLMDQLGKVKRVVEKK--TDVDEVLLVLDATVGQNGLTQARIFREVVDITGVV 607

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 608 LTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 657


>gi|70607206|ref|YP_256076.1| signal recognition particle [Sulfolobus acidocaldarius DSM 639]
 gi|68567854|gb|AAY80783.1| signal recognition particle [Sulfolobus acidocaldarius DSM 639]
          Length = 208

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 117/206 (56%), Gaps = 6/206 (2%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               +P VI+  GVNGVGKTT I K+   +    L  ++AA DTFR+AA +QL   A + 
Sbjct: 7   SSGKKPFVIIFFGVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTFRAAAQEQLAYHASKL 66

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               +  + G+D A++A++A   A+++ +DV++IDTAGR+H +S L+  + +++R+ K  
Sbjct: 67  EVQLIRGKYGADPASVAFDAISFAKSRNIDVVLIDTAGRMHIDSDLVEELKRVLRIAK-- 124

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P   + +LD+  G +AL Q   F    G   +I+TK+D  A+GG  + +    K P
Sbjct: 125 ----PDFRILILDSLAGSDALEQARHFENNVGYDAVILTKVDADAKGGIALSLAYELKKP 180

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           V ++GVG+  +DL PF    F   I 
Sbjct: 181 VVYMGVGQNYDDLIPFSPDWFVERIF 206


>gi|300783827|ref|YP_003764118.1| cell division protein FtsY [Amycolatopsis mediterranei U32]
 gi|299793341|gb|ADJ43716.1| cell division protein FtsY [Amycolatopsis mediterranei U32]
          Length = 429

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 112/315 (35%), Positives = 173/315 (54%), Gaps = 15/315 (4%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
             +   + +L      +       +  ++ +  LD+   +++ED L+ +D+G A   +IV
Sbjct: 120 EPAAGRMERLRGRLTKSRSMFGTSLLGLLGAGDLDEDSWQDVEDTLLMADLGAATTNQIV 179

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK----------PFNWDFSHRPHVILVV 117
           E L  +   + V   R   +  E++H++L               P   D   +P V+LV 
Sbjct: 180 ERLRDELSRRAV---RSSAEAREVLHEVLTAQLSTDGHRAVRALPHTVDGKKQPAVVLVA 236

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ WA+R  A+ V  + G+D
Sbjct: 237 GVNGTGKTTTTGKLARVLVAQGGTVLLGAADTFRAAAADQLQTWAERVGAEVVRGKEGAD 296

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            AA+A++A K+     VD +++DTAGRLH  + LM  +GK+ RV+++        VL VL
Sbjct: 297 PAAVAFDAVKRGVDTGVDAVLVDTAGRLHTKTGLMDELGKVKRVVEKQAK--VDEVLLVL 354

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +D
Sbjct: 355 DATTGQNGLMQARVFAEVIDVTGIVLTKLDGTAKGGIVFQVQKELGVPVKLVGLGEGPDD 414

Query: 298 LEPFVAKDFSAVITG 312
           L PF    F   + G
Sbjct: 415 LAPFEPGAFVDALLG 429


>gi|315425933|dbj|BAJ47583.1| signal recognition particle receptor [Candidatus Caldiarchaeum
           subterraneum]
          Length = 302

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 147/305 (48%), Gaps = 17/305 (5%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           + K  A       E +     S +  + V  +    L+ +D+ V  A  IV  L      
Sbjct: 1   MLKTVAKIFSSFIETVKTAKPSPKEVENVLSDFYLQLVEADVAVETADAIVNSLRHTLLE 60

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFS----------HRPHVILVVGVNGVGKT 125
            DV        V  E + K + PL K  + +             RP VIL VG NG GKT
Sbjct: 61  MDVPRFGDREAVLKEALKKAIEPLIKVADVNLVLKRVDEARKQGRPAVILFVGPNGSGKT 120

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T + KL+  +   G  V+LA+ DTFR+ AI+QL+    R     V    G+D AA+A +A
Sbjct: 121 TTVVKLAHYLRKRGYSVILASADTFRAGAIEQLETLGQRAGFMVVSQSYGADPAAVAVDA 180

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +A + +V+V++IDTAGR   +  L+  + K+ RV+K      P  V+   DA  G  A
Sbjct: 181 LNKASSMRVNVVLIDTAGRTELDRGLLEEMRKLKRVVK------PDFVIYTGDALAGNAA 234

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
           ++Q +MF  V G   +I++K+D  A+GG  I I  +   P+ FLGVG+ ++DL    A+ 
Sbjct: 235 VQQAKMFDEVVGIDYVILSKVDADAKGGSAISISHSTGKPLLFLGVGQELDDLVDKPAEK 294

Query: 306 FSAVI 310
               +
Sbjct: 295 LLEAL 299


>gi|314923843|gb|EFS87674.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL001PA1]
          Length = 390

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 102/270 (37%), Positives = 164/270 (60%), Gaps = 5/270 (1%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           +++  L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S  
Sbjct: 100 NSNNALARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS 159

Query: 83  RVLYDV--SELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
               +V   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G
Sbjct: 160 AHAREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEG 219

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +      VDV+++
Sbjct: 220 KTVLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLV 279

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   T
Sbjct: 280 DTAGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVT 337

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           G++++K+DG+A+GG ++ +     +PV  +
Sbjct: 338 GIVLSKLDGSAKGGIVVQVQRELGVPVKLI 367


>gi|331698517|ref|YP_004334756.1| signal recognition particle-docking protein FtsY [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953206|gb|AEA26903.1| signal recognition particle-docking protein FtsY [Pseudonocardia
           dioxanivorans CB1190]
          Length = 607

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 105/303 (34%), Positives = 169/303 (55%), Gaps = 5/303 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             + +L    + +     + +  ++ +  LD+   E++E  L+++D+G  +  ++VE L 
Sbjct: 306 GRLERLRGQLSRSRSAFGQSLLGLLGAGELDEESWEDVEATLLQADLGPEMTAELVEILR 365

Query: 72  TKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVI 128
           T+  ++ V +  +    + +++ + L P             RP V+LVVGVNG GKTT  
Sbjct: 366 TEIASRGVRTPDQARRLLRDVLGQALEPGLDRSVAALPHDGRPAVLLVVGVNGTGKTTTT 425

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           GKL++ +   G  V+L A DTFR+AA +QL  W +R  A  V    G D A++A++A K+
Sbjct: 426 GKLARVLVADGRHVVLGAADTFRAAAAEQLATWGERAGAAVVRGPEGGDPASVAFDAVKR 485

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
             A   D +++DTAGRLH  + LM  +GK+ RV+++        VL VLDATTGQN L Q
Sbjct: 486 GTADGADAVLLDTAGRLHTKTGLMDELGKVKRVVEKQAE--VDEVLLVLDATTGQNGLTQ 543

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
             +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF    F  
Sbjct: 544 ARVFGDVVKVTGIVLTKLDGTAKGGIVFRVQRELGVPVKLVGLGEGPDDLAPFEPAAFVD 603

Query: 309 VIT 311
            + 
Sbjct: 604 ALL 606


>gi|256379939|ref|YP_003103599.1| signal recognition particle-docking protein FtsY [Actinosynnema
           mirum DSM 43827]
 gi|255924242|gb|ACU39753.1| signal recognition particle-docking protein FtsY [Actinosynnema
           mirum DSM 43827]
          Length = 490

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 109/276 (39%), Positives = 159/276 (57%), Gaps = 5/276 (1%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLS 100
           D+    ++ED L+ +D+G AV  ++VE L  +  A+ V + ++    + E++   L P  
Sbjct: 217 DEDSWTDVEDTLLMADLGAAVTMQVVEALRQQIAARGVRTPEQARTLLREVLVDALHPSM 276

Query: 101 KPF--NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
                      +P V+LVVGVNGVGKTT  GKL++ +   G  V+L A DTFR+AA DQL
Sbjct: 277 DRSLHALPHDGKPAVLLVVGVNGVGKTTTTGKLARVLIADGRTVLLGAADTFRAAAADQL 336

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
             W  R  A  V    G D A++A++A KQ   + VD +++DTAGRLH  + LM  +GK+
Sbjct: 337 ATWGSRVGARTVRGPEGGDPASVAFDAVKQGVGEGVDTVLVDTAGRLHTKTGLMDELGKV 396

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
            RV+++        VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG +  +
Sbjct: 397 KRVVEKQ--TKVDEVLLVLDATTGQNGLTQARVFSEVVDVTGIVLTKLDGTAKGGIVFQV 454

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
                +PV  +G+GEG +DL PF    F   + G  
Sbjct: 455 QRELGVPVKLVGLGEGADDLAPFEPAAFVDALLGQG 490


>gi|268325095|emb|CBH38683.1| putative signal recognition particle protein [uncultured archaeon]
          Length = 350

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 97/301 (32%), Positives = 149/301 (49%), Gaps = 23/301 (7%)

Query: 27  KLKEGITDIISSRRLDDGVREELED-------LLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           KLKE    I+    + D   ++LE         L+ SD+  +VA++I   +  +   K  
Sbjct: 48  KLKEKGKAILDRETILDE--KDLEKPLEGLELALLESDVAFSVAEEIKVSVKRELVGKRR 105

Query: 80  SVQRVLYDVSEL--IHKMLMPLSKPFNWDFS------HRPHVILVVGVNGVGKTTVIGKL 131
                   + E    + +L   S     DF        +P +I+ VGVNG GKTT I K+
Sbjct: 106 KWGADTERLVEEAVRNALLNVFSADSELDFDAFVDEGKKPIIIVFVGVNGTGKTTSIAKV 165

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +KK+   G  V++AA DT+R+ A +Q++  A       +  + GSD AA+ Y+A K A A
Sbjct: 166 AKKLLGTGHSVVIAAADTYRAGAAEQIETHASNLGLKVIKHQYGSDPAAVVYDANKYASA 225

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             +DV++ DTAGR+H +  LM  + K+ RV K      P  VL V +A  G +A+ + + 
Sbjct: 226 NGIDVVLADTAGRMHTSINLMEQLKKICRVTK------PDMVLFVDEAVAGNDAVERAKK 279

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+   G    I+TK+D  A+GG  I I  +   P+ FLG G+  +DL  F A      + 
Sbjct: 280 FNEDIGIDAAILTKVDVDAKGGTAISIAHSTSKPILFLGKGQDYDDLVEFDAVWLVDRLL 339

Query: 312 G 312
           G
Sbjct: 340 G 340


>gi|206896211|ref|YP_002246863.1| cell division protein FtsY [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738828|gb|ACI17906.1| cell division protein FtsY [Coprothermobacter proteolyticus DSM
           5265]
          Length = 289

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/275 (33%), Positives = 139/275 (50%), Gaps = 15/275 (5%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            + L     EEL   LI +D  +  AQ ++E++  K    DV            I ++L+
Sbjct: 20  GKALTPEQEEELLSKLIMADFSLKKAQALLEQIKEKGNNVDV------------IREVLL 67

Query: 98  PLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             + PF        P V  ++GVNGVGKTT + KL+   +  G  V++   DTFR+AA D
Sbjct: 68  SEAPPFEPLRDTSVPSVFFIIGVNGVGKTTTVAKLAHMYAKQGKNVVVVGADTFRAAAQD 127

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QL    +R    +V  E GSD+ ++ Y+A    +  +  V ++DTAGR+H +  L+  + 
Sbjct: 128 QLSTLVNRMPVTYVGGERGSDSGSILYKAL--LENPQASVFLVDTAGRIHTSRALIDELS 185

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K+I+V K+     P  VL VLD T G    RQ   F      TGL++TKMD TA+GG + 
Sbjct: 186 KLIKVGKKFSEEFPQEVLLVLDGTQGIQGYRQAMSFVQGTPITGLVLTKMDSTAKGGMIF 245

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            I    KIPV  +  G+ ++D++ +  +     I 
Sbjct: 246 SIWDELKIPVKLVCFGQQLDDIDFYSPQRVVDAIL 280


>gi|257457830|ref|ZP_05622989.1| signal recognition particle-docking protein FtsY [Treponema
           vincentii ATCC 35580]
 gi|257444543|gb|EEV19627.1| signal recognition particle-docking protein FtsY [Treponema
           vincentii ATCC 35580]
          Length = 293

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/292 (28%), Positives = 139/292 (47%), Gaps = 6/292 (2%)

Query: 25  SLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
                E +  +     +LDD   E + D L+  DIG   A +I ++L ++   + +  Q 
Sbjct: 3   KRSFSESLKKLFGIHSKLDDSFFESVTDTLVEGDIGAQFAFEIEDQLRSECKKRKIEQQE 62

Query: 84  VLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
               V ++++ +L+P     ++     +  V L++GVNGVGKTT   KL++         
Sbjct: 63  Q---VLQVLYDILLPFLPVASFMPEKDKTSVYLLLGVNGVGKTTTAAKLAQYFKSRFEAP 119

Query: 143 MLAAGDTFRSA-AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           ++ A      A AI+QL+    +     +  + G D  A+ ++A +  + +   ++I DT
Sbjct: 120 IILAAADTFRAAAIEQLEYHGKQLDVRVIAHQYGGDPGAVIFDAAQAVRVQGGGLVIADT 179

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLHN   L+  + K+ R+ +       +  + VLD T GQ+  RQ E+FH   G   +
Sbjct: 180 AGRLHNKENLVRELQKINRIAESKTDEGCYKKILVLDVTAGQSGFRQAEVFHEAVGVDAV 239

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           I+TK D TA+GG  + +     +PV F G GE   D  PF A  +     G 
Sbjct: 240 ILTKYDSTAKGGIALSVGRQLNLPVIFTGTGEKYGDFAPFNADTYLREFIGM 291


>gi|315090797|gb|EFT62773.1| signal recognition particle-docking protein FtsY [Propionibacterium
           acnes HL110PA4]
          Length = 389

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 102/270 (37%), Positives = 164/270 (60%), Gaps = 5/270 (1%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           +++  L  G+ +++S+ +LDD   ++ E  LI SD+GV    ++VE+L ++     +S  
Sbjct: 100 NSNNALARGLAELLSADKLDDDAWDDFETTLITSDLGVGPTTELVEKLRSELAIDGISDS 159

Query: 83  RVLYDV--SELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
               +V   EL+  +   + +  N D    +P V+L+VGVNG GKTT  GKL++ +   G
Sbjct: 160 AHAREVLHHELVELVGPDMDRSINLDRPEGKPAVVLMVGVNGTGKTTTCGKLARVLVAEG 219

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             V+L A DTFR+AA +QL+ W +R     V  + G+D A++AYEA +      VDV+++
Sbjct: 220 KTVLLGAADTFRAAAGEQLETWGERVGVRTVRKDAGADPASVAYEAVQAGIDDGVDVVLV 279

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH  + LM  +GK+ RV+++L P +   VL VLDATTGQN L Q  +F  V   T
Sbjct: 280 DTAGRLHTKAGLMDELGKVKRVIEKLAPVS--EVLLVLDATTGQNGLTQACIFSEVVDVT 337

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           G++++K+DG+A+GG ++ +     +PV  +
Sbjct: 338 GIVLSKLDGSAKGGIVVQVQRELGVPVKLI 367


>gi|84489410|ref|YP_447642.1| hypothetical protein Msp_0601 [Methanosphaera stadtmanae DSM 3091]
 gi|84372729|gb|ABC56999.1| partially conserved hypothetical protein, predicted GTPase
           [Methanosphaera stadtmanae DSM 3091]
          Length = 550

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/272 (31%), Positives = 135/272 (49%), Gaps = 22/272 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDV---------SVQRVLYDVSELI----HKMLMPL 99
           LI  D+   VA++IVE +      K +         +   +   ++E+I    + +L  +
Sbjct: 282 LIEGDVAFDVAERIVESVKEDLIGKKIKRRGDMELFTTNALKKAITEIIDNGYYDLLGDI 341

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            K         P+ I+ VG+NG GKTT I K++  +   G   +  A DTFR+ AI+QL+
Sbjct: 342 EKSKE---KGEPYKIMFVGINGTGKTTTIAKIATYLEKHGYSSVFGASDTFRAGAIEQLE 398

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A+  +   +  E  SD AA+A++A + A+A   DV++IDT+GR+  N+ LM  + K+ 
Sbjct: 399 HHANNLNLKIIKHERNSDPAAVAFDAVEHAKASGKDVVLIDTSGRMQTNANLMDEMKKIK 458

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           RV        P  V+ V DA  G +A  Q   F+ V    G+I+TK D  A+GG  I I 
Sbjct: 459 RV------SQPDIVIYVGDALMGNDATEQASKFNEVIDIDGIILTKADADAKGGAAISIG 512

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                P+ F+G G+  +DL  F  +     I 
Sbjct: 513 HVIHKPILFIGTGQSYDDLMEFEPEWMINQIF 544


>gi|296117611|ref|ZP_06836195.1| signal recognition particle GTPase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969342|gb|EFG82583.1| signal recognition particle GTPase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 559

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 109/290 (37%), Positives = 168/290 (57%), Gaps = 5/290 (1%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
             + +G+  I+S+  LD+   EE+ED LI +D+G  V  K+ + L  K   + VS +   
Sbjct: 270 NAIGQGLMGILSAGDLDEDAWEEIEDTLIMADLGTTVTMKVSDSLRQKIAERGVSSEAEA 329

Query: 86  YD-VSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
              + E + ++  P             +P VI+VVGVNG GKTT  GKL++ +   G  V
Sbjct: 330 RAMLREALIEVGHPEMDRSIKAMPHEGKPAVIMVVGVNGTGKTTTTGKLARVLVSMGHSV 389

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA DQL+ W  R  A  V  + G+D A++A++A  +   ++VDV+++DTA
Sbjct: 390 LLGAADTFRAAAADQLETWGRRVGATTVRGKEGADPASVAFDAVAKGVEQQVDVVLVDTA 449

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH ++ LM  +GK+ RV+++        VL V+DAT GQN L Q  +F  V   TG++
Sbjct: 450 GRLHTSNDLMDQLGKVKRVVEKKSS--VDEVLLVIDATVGQNGLMQARVFREVVDITGVV 507

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +TK+DGTA+GG +  +     +PV  +G+GEG + L PF  + F   + G
Sbjct: 508 LTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADHLAPFEVEGFVDALLG 557


>gi|225619739|ref|YP_002720996.1| signal recognition particle GTPase [Brachyspira hyodysenteriae WA1]
 gi|225214558|gb|ACN83292.1| Signal recognition particle GTPase [Brachyspira hyodysenteriae WA1]
          Length = 323

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 93/274 (33%), Positives = 147/274 (53%), Gaps = 11/274 (4%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL---IHKMLM 97
           ++D     LE+ LI +D GV   + I+ +L       DV  +  + D SE    + ++L+
Sbjct: 57  INDEFFASLENTLITADAGVETTKDIISKLR------DVIEKENIKDPSEAKKYLREILI 110

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                   + + +  ++ +VGVNGVGKTT I KL+  +     KV+LAA DTFR+AAI+Q
Sbjct: 111 SKFISRKIELNGK-TILFIVGVNGVGKTTSIAKLANILK-NDHKVILAAADTFRAAAIEQ 168

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+ WA+R S   V  +   D A++ + A  +A+A   D++I+DTAGR HN   L+  + K
Sbjct: 169 LEEWANRLSVTIVKGQQAGDPASVLFSALDKAKATDADIVIVDTAGRFHNQENLVRQLEK 228

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           M ++            + VLDA  G N + Q ++F       G I++K+D TA+GG  I 
Sbjct: 229 MKKIATERFTEFKFVPILVLDANVGHNGIEQAKVFTNALDIQGAIVSKLDSTAKGGVAIS 288

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           I     +P+Y+ G GE ++D + F A+ F   I 
Sbjct: 289 IAHYLSLPIYYGGFGEKVDDFKEFDAESFVDSIL 322


>gi|28493429|ref|NP_787590.1| signal recognition particle protein [Tropheryma whipplei str.
           Twist]
 gi|28476470|gb|AAO44559.1| signal recognition particle protein [Tropheryma whipplei str.
           Twist]
          Length = 448

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +    ++ +     L     D V  E+   L+ SD+   +AQ  V  +  +  +
Sbjct: 4   FETVSGRFLNALSTLRGRGSLVKRDIDVVLSEVYKTLLDSDVSFEIAQAFVHRVRDRSMS 63

Query: 77  KD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++        +RV   V E +  +L        +  +  P +I++VG+ G GKT+  GKL
Sbjct: 64  QESLRAINPHKRVTQIVWEELVDLLGHQKTALKFSRTF-PTIIMLVGLQGSGKTSFAGKL 122

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K + + G    L A D  R AA  QL+  A++  A  +  + G+   A+     K A+ 
Sbjct: 123 AKWLMERGHTAALGACDLQRPAAASQLQAVAEQAGASVLIPKSGNALDAVKT-VVKTARE 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K+  VLIIDTAGR++ +S +M  + ++ R+ K      PH  L V+D+ TGQ AL    +
Sbjct: 182 KQFSVLIIDTAGRMNADSDMMDQLSEIDRLAK------PHQTLLVVDSATGQEALNITRV 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG++M+K+D   + G  + +      P+ F  +GEG++DLE F     +  + 
Sbjct: 236 FCQHLSVTGVVMSKLDSDVKAGAALSVSSL--RPIIFSCIGEGVDDLEQFNPDSVARRML 293

Query: 312 GCLDYGEE 319
           G     EE
Sbjct: 294 GMQGPLEE 301


>gi|171186108|ref|YP_001795027.1| signal recognition particle-docking protein FtsY [Thermoproteus
           neutrophilus V24Sta]
 gi|170935320|gb|ACB40581.1| signal recognition particle-docking protein FtsY [Thermoproteus
           neutrophilus V24Sta]
          Length = 305

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 147/319 (46%), Gaps = 35/319 (10%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK------- 65
              KL K  +       E +   +   +LD    +E+E   + SD+ + +          
Sbjct: 1   MFDKLRKTLSK----FVESVVSAVKEDQLD---GKEVEK--LVSDLYLDLVDSDVAVEVA 51

Query: 66  ------IVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPL------SKPFNWDFSHRPH 112
                 +   L+  +  +    + V+   V + +  +L  +       +        RP+
Sbjct: 52  DAVVEELRRRLVGTKVPRFGDRESVVRKAVHDALLGVLGDVPDVDFYEEARRALERSRPY 111

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V++ +G NG GKTT + KL+  + + G +V+ AA DTFR+ A +QL+    R     V  
Sbjct: 112 VVMFLGPNGYGKTTTLAKLAFNLQEMGFRVVAAAADTFRAGAREQLEEHGRRVGFRVVGG 171

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             GSD AA+AY+A + A+++    ++IDTAGR+H ++ LM  + K+ RV +      PH 
Sbjct: 172 PYGSDPAAVAYDAVQHARSRGYHFVLIDTAGRMHTDANLMEELRKIQRVAE------PHL 225

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            + V DA  G  AL     +       G+I TK+D   +GG ++  +   K PVYFLGVG
Sbjct: 226 SIFVFDAQLGNEALEIARYYSKYVRIDGMIATKVDAYPKGGSILTFMYVLKRPVYFLGVG 285

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +   DL  F   ++   + 
Sbjct: 286 QTYRDLVKFSKSEYVGRLL 304


>gi|28572459|ref|NP_789239.1| signal recognition particle protein [Tropheryma whipplei TW08/27]
 gi|28410591|emb|CAD66977.1| signal recognition particle protein [Tropheryma whipplei TW08/27]
          Length = 446

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 147/308 (47%), Gaps = 19/308 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +    ++ +     L     D V  E+   L+ SD+   +AQ  V  +  +  +
Sbjct: 2   FETVSGRFLNALSTLRGRGSLVKRDIDVVLSEVYKTLLDSDVSFEIAQAFVHRVRGRSMS 61

Query: 77  KD-----VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++        +RV   V E +  +L        +  +  P +I++VG+ G GKT+  GKL
Sbjct: 62  QESLRAINPHKRVTQIVWEELVDLLGHQKTALKFSRTF-PTIIMLVGLQGSGKTSFAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K + + G    L A D  R AA  QL+  A++  A  +  + G+   A+     K A+ 
Sbjct: 121 AKWLMERGHTAALGACDLQRPAAASQLQAVAEQAGASVLIPKSGNVLDAVKT-VVKTARE 179

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K+  VLIIDTAGR++ +S +M  + ++ R+ K      PH  L V+D+ TGQ AL    +
Sbjct: 180 KQFSVLIIDTAGRMNADSDMMDQLSEIDRLAK------PHQTLLVVDSATGQEALNITRV 233

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F      TG++M+K+D   + G  + +      P+ F  +GEG++DLE F     +  + 
Sbjct: 234 FCQHLSVTGVVMSKLDSDVKAGAALSVSSL--RPIIFSCIGEGVDDLEQFNPDSVARRML 291

Query: 312 GCLDYGEE 319
           G     EE
Sbjct: 292 GMQGPLEE 299


>gi|320535248|ref|ZP_08035372.1| signal recognition particle-docking protein FtsY [Treponema
           phagedenis F0421]
 gi|320147901|gb|EFW39393.1| signal recognition particle-docking protein FtsY [Treponema
           phagedenis F0421]
          Length = 292

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 148/292 (50%), Gaps = 6/292 (2%)

Query: 24  TSLKLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           T  +  EG+  +      LDD   E L D L+  D+G   A  I   L  +   +    +
Sbjct: 2   TKRRFSEGLKRLFGMHINLDDSFFENLTDSLVEGDVGAKTAFDIETLLRQECKKQKAETK 61

Query: 83  RVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGL 140
               D+  ++  +L PL K   +     +  V L++GVNGVGKTT I K++        +
Sbjct: 62  D---DIIRILTGILTPLIKTVTFMPEEKKTSVYLILGVNGVGKTTSIAKIANYYNKILTM 118

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            ++LAA DTFR+AAI+QL+          V  + G D  A+ ++A +  +A+   +++ D
Sbjct: 119 PIVLAAADTFRAAAIEQLQYHGKALGLRVVAHQHGGDPGAVVFDAAEAIKAQGGGLVLAD 178

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAGRLH    L+  +GK+ ++ +       +  + VLDATTGQNA RQ E FH       
Sbjct: 179 TAGRLHTKENLIRELGKIDKIAESKADTGCYKKILVLDATTGQNAFRQAEAFHEAISIDA 238

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +++TK D TA+GG  I I     IP+ F+G GE  +D+ PF  K+F     G
Sbjct: 239 IMLTKYDSTAKGGNAITISKELNIPMLFIGTGEQYSDIAPFDTKEFIKEFIG 290


>gi|157134401|ref|XP_001663285.1| signal recognition particle 54 kda protein [Aedes aegypti]
 gi|108870487|gb|EAT34712.1| signal recognition particle 54 kda protein [Aedes aegypti]
          Length = 401

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 6/195 (3%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT   KL+        K  L   DTFR+ A DQ+K  A +    F  S    D   
Sbjct: 8   GSGKTTTCTKLAYHYQKKNWKSCLVCADTFRAGAYDQIKQNATKARIPFYGSYTEVDPVV 67

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A +     + +  + +I+DT+GR      L   +  +   +K      P +++ V+DAT
Sbjct: 68  IAQDGVDMFKKEGFEFIIVDTSGRHKQEESLFEEMLAVATAVK------PDNIIFVMDAT 121

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQ    Q + F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEP
Sbjct: 122 IGQACEAQAKAFKEKVDIGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEP 181

Query: 301 FVAKDFSAVITGCLD 315
           F  K F + + G  D
Sbjct: 182 FKTKPFISKLLGMGD 196


>gi|184200702|ref|YP_001854909.1| cell division protein FtsY [Kocuria rhizophila DC2201]
 gi|183580932|dbj|BAG29403.1| signal recognition particle receptor [Kocuria rhizophila DC2201]
          Length = 372

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 108/282 (38%), Positives = 162/282 (57%), Gaps = 12/282 (4%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
           S  R+D    +E+ED L+ +D+G   + ++VE L  +           L  +   + + +
Sbjct: 95  SRERIDQDTWDEIEDTLLMADLGTDASLELVENLKKRVRVDGTKDPSQLKAM---LREEM 151

Query: 97  MPLSKPF------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           + L  P             +P V+LVVGVNGVGKTT +GKL++ +      VML A DTF
Sbjct: 152 LALVDPTLDRSLRTESAPGKPAVVLVVGVNGVGKTTTVGKLARVLVAEDKDVMLGAADTF 211

Query: 151 RSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           R+AA DQL+ W  R     V SE  G+D A++AY+A +    ++ DV+++DTAGRL N +
Sbjct: 212 RAAAADQLETWGARVGVPTVRSEQEGADPASVAYDAVRAGIEQESDVVLVDTAGRLQNKA 271

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            LM  +GK+ RV+++    A   VL V+DATTGQN + Q  +F      TG+++TK+DGT
Sbjct: 272 GLMDQLGKVKRVIEK--AAAVDEVLLVIDATTGQNGMTQARVFAEAVDITGIVLTKLDGT 329

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           A+GG ++ I     +PV  +G+GEG +DL PF A+ F   I 
Sbjct: 330 AKGGIVVAIQRGLGVPVKLIGLGEGPDDLAPFNAEQFVDAII 371


>gi|296139324|ref|YP_003646567.1| signal recognition particle-docking protein FtsY [Tsukamurella
           paurometabola DSM 20162]
 gi|296027458|gb|ADG78228.1| signal recognition particle-docking protein FtsY [Tsukamurella
           paurometabola DSM 20162]
          Length = 479

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 114/310 (36%), Positives = 175/310 (56%), Gaps = 11/310 (3%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
            +   + +L    A +   +   +  ++ +  LD+   EE+ED L+ +D+G     K+VE
Sbjct: 175 PTEGRLDRLKGRLARSQSTVGASLLGLLGAGDLDEDSWEEIEDTLLMADLGTPTTLKVVE 234

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------FNWDFSHRPHVILVVGVNGV 122
           EL  +     V+      +   L+ K+L+  + P           +  P V+LVVGVNG 
Sbjct: 235 ELREQVATHGVANA---AEARALLRKVLIAEAHPEYDRSIKALPHAGAPSVLLVVGVNGT 291

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT  GKL++ +   G +V+L A DTFR+AA DQL+ WA+R  AD V  + G+D AA+A
Sbjct: 292 GKTTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQTWAERVGADVVRGKEGADPAAVA 351

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A  +   + VDV++IDTAGRLH  + LM  + K+ RV+++        VL VLDAT G
Sbjct: 352 FDAVAKGTEEGVDVVLIDTAGRLHTKTGLMDELDKVKRVVEKKAK--VDEVLLVLDATIG 409

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           QN L Q ++F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF 
Sbjct: 410 QNGLSQAKVFAEVVDITGVVLTKLDGTAKGGIVYAVQHELGVPVKLVGLGEGADDLAPFE 469

Query: 303 AKDFSAVITG 312
              F   + G
Sbjct: 470 PGAFVDALLG 479


>gi|255513535|gb|EET89801.1| signal recognition particle-docking protein FtsY [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 370

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 143/302 (47%), Gaps = 23/302 (7%)

Query: 27  KLKEGITDIISSR-RLDD----GVREELEDLLIRSDIGVAVAQKIVEEL----LTKRYAK 77
            ++  I  +     +L D       EEL+  +++SD+     ++ + +L       +Y  
Sbjct: 73  SIQTKIKGVFLKSIKLSDSDIENFTEELKISMLQSDVSYKTTEEFISKLSQSMRESKYDS 132

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNW--------DFSHRPHVILVVGVNGVGKTTVIG 129
                ++  DV   + ++L   +   +         +    P  IL +G NG GKTT I 
Sbjct: 133 KNIGSQLKRDVKGALLEVLKINNSGIDVFDYVLKRAEEGSIPVKILFLGPNGTGKTTTIA 192

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++ K+    +  +++A DTFR+AAI+Q +  A    A+ + S  G+D A++A++A   A
Sbjct: 193 KVAYKLKKMNIPTVISASDTFRAAAIEQTEYHAKAVGAEVIKSGYGADPASVAFDAINYA 252

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           ++  +  ++IDTAGR   N  L++ + K++RV++      P   L V ++T G     Q+
Sbjct: 253 RSHGMPAVLIDTAGRQETNKNLLSEMQKIVRVVQ------PDITLFVGESTAGSIIAEQI 306

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           +         G+I+TK+D  A+GG +I I  T  IPV  LG GE    L  +        
Sbjct: 307 KELSKAIKIDGIILTKIDCDAKGGSVISIADTTGIPVLLLGSGESYEALSKYSNDFIIDS 366

Query: 310 IT 311
           + 
Sbjct: 367 LL 368


>gi|285206567|gb|ADC35059.1| cell division membrane protein FtsY [Diplorickettsia massiliensis]
          Length = 241

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 102/241 (42%), Positives = 155/241 (64%), Gaps = 2/241 (0%)

Query: 28  LKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
           L +G+   I+  + +D  + EE+E+LL+ +D+G+ V ++I+ EL  K + + +   + ++
Sbjct: 1   LVDGLASLILGKKTVDQDLLEEIENLLLSADVGLTVTEEIINELTQKLHRQQLIDGQAVW 60

Query: 87  DVSE-LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
              E  +  +L P  +P   + S++P VILV+GVNGVGKTT IGKL+      G +V+LA
Sbjct: 61  TALEHALTALLKPCEQPLCIEVSNKPFVILVIGVNGVGKTTTIGKLAHYFKSQGKQVLLA 120

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           AGDTFR+AA +QL  WA+R     +    G+D+A++ Y+A + AQA+ +D+LI DTAGRL
Sbjct: 121 AGDTFRAAATEQLAAWAERNEVPIIAQHQGADSASVIYDALQAAQARNIDILIADTAGRL 180

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           H    LM  + K+ +VL +LDP APH  L VLDA+ GQN+L Q + FH     TGL +TK
Sbjct: 181 HTKEHLMQELAKVKKVLAKLDPAAPHETLLVLDASIGQNSLAQAQFFHQSIQLTGLALTK 240

Query: 266 M 266
           +
Sbjct: 241 L 241


>gi|226305925|ref|YP_002765885.1| signal recognition particle receptor [Rhodococcus erythropolis PR4]
 gi|226185042|dbj|BAH33146.1| signal recognition particle receptor [Rhodococcus erythropolis PR4]
          Length = 487

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 174/308 (56%), Gaps = 5/308 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
             +   + +L    + +   + + +  ++    LD+   EE+ED L+ +D+G A  +K+V
Sbjct: 182 DPTEGRLDRLRGRLSRSQSAVGKSLLGLLGGGDLDEDSWEEVEDTLLIADLGSATTEKVV 241

Query: 68  EELLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGK 124
            +L  +  A+ V  +     +    LI ++   L +          P V+LVVGVNG GK
Sbjct: 242 TKLREQMAARSVRTEAAARALLREVLIAELRPELDRSIRALPHDDHPAVLLVVGVNGTGK 301

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL++ +   G +V+L A DTFR+AA DQL+ WA+R  A+ V  + G D AA+A++
Sbjct: 302 TTTTGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAERVGAEVVRGKEGGDPAAIAFD 361

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A  +  A  VDV++IDTAGRLH  + LM  +GK+ RV+++        VL VLDAT GQN
Sbjct: 362 AVSRGIADGVDVVLIDTAGRLHTKTGLMDELGKVKRVIEKKAS--VDDVLLVLDATVGQN 419

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF   
Sbjct: 420 GLAQARVFAEVVDITGVVLTKLDGTAKGGIVFQVQHELGVPVKLVGLGEGADDLAPFEPG 479

Query: 305 DFSAVITG 312
            F   + G
Sbjct: 480 AFVDALLG 487


>gi|229491381|ref|ZP_04385205.1| cell division protein FtsY [Rhodococcus erythropolis SK121]
 gi|229321666|gb|EEN87463.1| cell division protein FtsY [Rhodococcus erythropolis SK121]
          Length = 479

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 174/308 (56%), Gaps = 5/308 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
             +   + +L    + +   + + +  ++    LD+   EE+ED L+ +D+G A  +K+V
Sbjct: 174 DPTEGRLDRLRGRLSRSQSAVGKSLLGLLGGGDLDEDSWEEVEDTLLIADLGSATTEKVV 233

Query: 68  EELLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGK 124
            +L  +  A+ V  +     +    LI ++   L +          P V+LVVGVNG GK
Sbjct: 234 TKLREQMAARSVRTEAAARALLREVLIAELRPELDRSIRALPHDDHPAVLLVVGVNGTGK 293

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL++ +   G +V+L A DTFR+AA DQL+ WA+R  A+ V  + G D AA+A++
Sbjct: 294 TTTTGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAERVGAEVVRGKEGGDPAAIAFD 353

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A  +  A  VDV++IDTAGRLH  + LM  +GK+ RV+++        VL VLDAT GQN
Sbjct: 354 AVSRGIADGVDVVLIDTAGRLHTKTGLMDELGKVKRVIEKKAS--VDDVLLVLDATVGQN 411

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF   
Sbjct: 412 GLAQARVFAEVVDITGVVLTKLDGTAKGGIVFQVQHELGVPVKLVGLGEGADDLAPFEPG 471

Query: 305 DFSAVITG 312
            F   + G
Sbjct: 472 AFVDALLG 479


>gi|307353992|ref|YP_003895043.1| signal recognition particle-docking protein FtsY [Methanoplanus
           petrolearius DSM 11571]
 gi|307157225|gb|ADN36605.1| signal recognition particle-docking protein FtsY [Methanoplanus
           petrolearius DSM 11571]
          Length = 361

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 136/261 (52%), Gaps = 12/261 (4%)

Query: 57  DIGVAVAQKIV----EELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNW-DFSHR 110
           D+     + I+    ++L  +R     S ++ + D + + + ++L       ++ D   +
Sbjct: 104 DVAFDTTEAIISHMKDDLAGQRRKIGTSSEKFVTDALKDALLEVLGEGFLLTDYIDSHEK 163

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P  +L  GVNG GKTT I K++  +   G  V++ +GDTFR+ A  Q+K  ADR     +
Sbjct: 164 PVKVLFTGVNGAGKTTTIAKVAFYLKSKGYSVVIGSGDTFRAGANQQMKTHADRIGVKVI 223

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             + G+D +A+ ++    A+A  +DV++ DTAGR HN   LM  + K+ RV+       P
Sbjct: 224 SHQEGADPSAVLFDTVNYAKAHNIDVVLADTAGRFHNKGNLMKQLEKIRRVMN------P 277

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V  V +A  G +A+ + E F++  GT  +++TK D   +GG  I I  T   P+ FLG
Sbjct: 278 DIVAYVDEAVAGNDAVIRAEEFNSAVGTDVVVLTKADMDTKGGAAISIAHTIGKPLMFLG 337

Query: 291 VGEGINDLEPFVAKDFSAVIT 311
           +G+G +D+ PF  +     + 
Sbjct: 338 MGQGYDDIVPFEPEKMVEELL 358


>gi|307330024|ref|ZP_07609175.1| signal recognition particle-docking protein FtsY [Streptomyces
           violaceusniger Tu 4113]
 gi|306884285|gb|EFN15320.1| signal recognition particle-docking protein FtsY [Streptomyces
           violaceusniger Tu 4113]
          Length = 419

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 110/315 (34%), Positives = 165/315 (52%), Gaps = 22/315 (6%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             + +L    + +   L +G+  ++S   LDD   EE+ED L+ +D+GVA  +++VE L 
Sbjct: 112 GRLVRLRARLSRSQTTLGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVAPTEELVERLR 171

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK------- 124
            +           L  +          L +    +     H    VG NG  K       
Sbjct: 172 ERVKVLGTRSPDELRGLLR------EELLRLIGTEADRSVHTESGVGANGEEKPGVVMVV 225

Query: 125 -------TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
                  TT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V      D
Sbjct: 226 GVNGTGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEAGD 285

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A++A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++    A   VL VL
Sbjct: 286 PASVAFDAVKEGIAESADVVLIDTAGRLHTKTGLMDELGKVKRVVEKH--GAVDEVLLVL 343

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG ++ +    K+PV  +G+GEG +D
Sbjct: 344 DATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELKVPVKLVGLGEGADD 403

Query: 298 LEPFVAKDFSAVITG 312
           L PF  + F   + G
Sbjct: 404 LAPFEPEAFVDALIG 418


>gi|198433605|ref|XP_002122258.1| PREDICTED: similar to mCG7475 [Ciona intestinalis]
          Length = 639

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 145/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             +S  +      ++ S+ L       V   + D LI  ++   +A+K+ + +  K   K
Sbjct: 316 KKSSGGIFSMFRGLVGSKALTKEALQPVLNSMRDHLIGKNVAADIAEKMCDSVANKLEGK 375

Query: 78  DVSVQRVL-----YDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            V     +       +++ +  +L P      L        + +P+VI   GVNGVGK+T
Sbjct: 376 MVGTFSTIASTVKQSLNDSLVLILTPKRRVDILRDVLEAQRAGKPYVITFCGVNGVGKST 435

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI-------------WADRTSADFVCSE 173
            + K+   + + G +VM+AA DTFR+ A++QL+                 R   +     
Sbjct: 436 NLAKICFWLMENGFRVMIAACDTFRAGAVEQLRTHKTRLHTLHPPSMHGGRDGVNLFEKG 495

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A +A   A+ ++ DV+++DTAGR+ +N  LM  + K+I V      ++P  V
Sbjct: 496 YGKDAAGIAMQAINAAREQRYDVVLVDTAGRMQDNEPLMRSLAKLITV------NSPDLV 549

Query: 234 LQVLDATTGQNALRQVEMFHAVA----------GTTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +  T 
Sbjct: 550 LFVGEALVGNEAVDQLVKFNQALADYSNAENPRSIDGIVLTKFDTIDDKVGAAISMTYTT 609

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK     + 
Sbjct: 610 GQPIVFVGTGQSYPDLRRLNAKAVVHALL 638


>gi|227503347|ref|ZP_03933396.1| cell division protein FtsY [Corynebacterium accolens ATCC 49725]
 gi|227075850|gb|EEI13813.1| cell division protein FtsY [Corynebacterium accolens ATCC 49725]
          Length = 712

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 106/290 (36%), Positives = 166/290 (57%), Gaps = 5/290 (1%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
             + +G+  I+S+  LD+   EE+ED LI +D+G     K+ + L  K   + VS +   
Sbjct: 423 NAIGQGLMGILSAGDLDEDAWEEIEDTLIMADLGTKSTMKVTDSLRDKIAERGVSSEEEA 482

Query: 86  YD-VSELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
              + E + +   P             +P +++VVGVNG GKTT  GKL++ +      V
Sbjct: 483 RAMLRECLIEACHPEMDRSIRAMPNDGKPAIVMVVGVNGTGKTTTTGKLARVLVSMDHSV 542

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +L A DTFR+AA DQL+ W  R  A+ V  + G+D A++A++A      ++VDV+++DTA
Sbjct: 543 LLGAADTFRAAAADQLETWGRRVGAETVRGKEGADPASVAFDAVATGVEQQVDVVLVDTA 602

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH ++ LM  +GK+ RV+++        VL VLDAT GQN L Q  +F  V   +G++
Sbjct: 603 GRLHTSTDLMDQLGKVKRVVEKK--TEVDEVLLVLDATVGQNGLAQARIFREVVDISGVV 660

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +TK+DGTA+GG +  +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 661 LTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVEGFVDALLG 710


>gi|291059955|gb|ADD72690.1| signal recognition particle-docking protein FtsY [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 293

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 144/287 (50%), Gaps = 4/287 (1%)

Query: 27  KLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
            L + I  ++  +  LD+     LE+LLI  D+ ++ A+    +L      + V  +  L
Sbjct: 5   NLAQKIRRLLGGQAPLDETFFSALEELLIEGDLSLSTAESFCTQLRNAARTRSVHTEDAL 64

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVML 144
             +   I +  + ++           +  L++GVNG GKTT   KL+          ++ 
Sbjct: 65  RTLFAEIMESCVRVTHLAPNPNQCSLY--LLLGVNGSGKTTSAAKLAAYYQTQKVHPILF 122

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+AA +QL     +     +    G D AA+ ++A +  +A+K  +L++DTAGR
Sbjct: 123 AAADTFRAAAAEQLAHHGAQLGVRVIAHPGGKDPAAVVFDAGEALRAQKRGLLLVDTAGR 182

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LHN + L+A + K+ R+ +       +  + VLDATTGQNA RQ + FH   G   L++ 
Sbjct: 183 LHNKTHLIAELQKIDRIAQTKVSADAYRKILVLDATTGQNAFRQAQTFHEAIGVDALLLA 242

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K D  ARGG +  I+    IP+ FLG GE   DL    A++F +   
Sbjct: 243 KCDTRARGGAVFSIMQELGIPLAFLGWGERYTDLVEANAREFVSSFL 289


>gi|15639566|ref|NP_219016.1| cell division protein (ftsY) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025805|ref|YP_001933577.1| cell division protein [Treponema pallidum subsp. pallidum SS14]
 gi|3322872|gb|AAC65553.1| cell division protein (ftsY) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018380|gb|ACD70998.1| cell division protein [Treponema pallidum subsp. pallidum SS14]
          Length = 295

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 144/287 (50%), Gaps = 4/287 (1%)

Query: 27  KLKEGITDIISSR-RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
            L + I  ++  +  LD+     LE+LLI  D+ ++ A+    +L      + V  +  L
Sbjct: 7   NLAQKIRRLLGGQAPLDETFFSALEELLIEGDLSLSTAESFCTQLRNAARTRSVHTEDAL 66

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVML 144
             +   I +  + ++           +  L++GVNG GKTT   KL+          ++ 
Sbjct: 67  RTLFAEIMESCVRVTHLAPNPNQCSLY--LLLGVNGSGKTTSAAKLAAYYQTQKVHPILF 124

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           AA DTFR+AA +QL     +     +    G D AA+ ++A +  +A+K  +L++DTAGR
Sbjct: 125 AAADTFRAAAAEQLAHHGAQLGVRVIAHPGGKDPAAVVFDAGEALRAQKRGLLLVDTAGR 184

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           LHN + L+A + K+ R+ +       +  + VLDATTGQNA RQ + FH   G   L++ 
Sbjct: 185 LHNKTHLIAELQKIDRIAQTKVSADAYRKILVLDATTGQNAFRQAQTFHEAIGVDALLLA 244

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K D  ARGG +  I+    IP+ FLG GE   DL    A++F +   
Sbjct: 245 KCDTRARGGAVFSIMQELGIPLAFLGWGERYTDLVEANAREFVSSFL 291


>gi|300120716|emb|CBK20270.2| unnamed protein product [Blastocystis hominis]
          Length = 565

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 139/311 (44%), Gaps = 32/311 (10%)

Query: 27  KLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           KL   +  ++    + +     V + L+  L+  ++   +A  I E + TK   K +   
Sbjct: 260 KLTGFMKRLVGETPITNEELTPVIDSLKKKLVEKNVATDIADSICENVRTKILGKKLGGI 319

Query: 83  RVLYDV-----SELIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKL 131
           + +  V      E I  +L   S               +   I+  GVNGVGK+T + K+
Sbjct: 320 KSVTSVVRAALEESIESILTTRSSVDILRLVQDARKQGKTFSIVFCGVNGVGKSTSLSKV 379

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      GL+V+LAA DT+RS A++QL++  DR   D        D + +AY A + A  
Sbjct: 380 AYYFKSKGLRVLLAACDTYRSGAVEQLRVHVDRLGLDLFERGYTKDPSDVAYYALRYANE 439

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +  DV +IDTAGR+ NN  LM  + K++ V      + P  +L V +A  G + + Q+  
Sbjct: 440 QGFDVCLIDTAGRMQNNEGLMRSLVKLVNV------NHPDLILFVGEALVGNDGVDQLRE 493

Query: 252 FHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           F+                G+++TK D    + G  + +V     P+ F+G G+   +L+ 
Sbjct: 494 FNRALHDLSDLAEPRLVDGIVLTKFDTIDDKVGAALSMVYCTGKPIVFVGTGQKYTNLKR 553

Query: 301 FVAKDFSAVIT 311
              KD   ++ 
Sbjct: 554 LNVKDVVNLLL 564


>gi|189206976|ref|XP_001939822.1| signal recognition particle 54 kDa protein [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187975915|gb|EDU42541.1| signal recognition particle 54 kDa protein [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 489

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 76/276 (27%), Positives = 125/276 (45%), Gaps = 34/276 (12%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLT----KRYAKDVSVQRVL-YDVSELIHKMLMPL 99
           + +E+ + L+ +D+ V +   + + +      K  A  V+ +R++   V + + KM+ P 
Sbjct: 1   MVKEISNALVEADVNVKLVMNLRQSIKRTVDFKHLAPGVNKKRLIQKAVFDELVKMVDPH 60

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           ++PF      + +VI+ VG+ G GKTT   KL++     G K  L   DTFR+ A DQLK
Sbjct: 61  AEPFK-PRKGKSNVIMFVGLQGAGKTTTCTKLARWYQARGFKACLVCADTFRAGAFDQLK 119

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A +    +  S   +D   +A E  ++ + ++ +++I+DT+GR      L   +    
Sbjct: 120 QNATKAKIPYYGSHTQTDPVVVAGEGVEKFKKERFEIIIVDTSGRHRQEKDLFDEMA--- 176

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
                                    A  Q   F   A    +I+TK DG A GGG I  V
Sbjct: 177 -------------------------AESQARAFKEAADFGAIIITKTDGAAAGGGAISAV 211

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
                P+ FLG GE + DLE F  + F + + G  D
Sbjct: 212 AATHTPIVFLGNGEHMLDLERFAPQAFVSKLLGMGD 247


>gi|298708560|emb|CBJ30645.1| SRP101, alpha subunit of the signal recognition particle receptor
           [Ectocarpus siliculosus]
          Length = 589

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 144/337 (42%), Gaps = 38/337 (11%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSD 57
           +++       SW   L          L   +  +  ++ L++   E    ++ + L+  +
Sbjct: 265 ASENADENKGSWAGTL------LKTSLGGFLHGLTGTKVLEERDLEPVMTKMREQLMGRN 318

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYD-----VSELIHKMLMP------LSKPFNWD 106
           +   VA  I   +      + +     +       + E + ++L P      L +     
Sbjct: 319 VASEVANDITASVQATLIDQKLKSFTRVKTAVQSALKEAVSRVLTPKKSTDVLREVKAAR 378

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              + + +  VG+NGVGK+T + K++  + + G+KV++AA DTFRS A++QL++      
Sbjct: 379 SRGKVYSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVHCRCLD 438

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                     D++A+A EA K A  +  D ++IDTAGR+ NN  LM  + K+I      +
Sbjct: 439 VPLFEKGYARDSSAVAREAVKHAAEEGYDCVLIDTAGRMQNNEPLMRALSKLI------N 492

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVA----------GTTGLIMTKMDG-TARGGGL 275
            + P  VL V +A  G + + Q++MF+                G+++TK D    + G  
Sbjct: 493 ENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRYHQIDGVVLTKFDTIDTKVGAA 552

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           + +      P+ F+G G+    L           + G
Sbjct: 553 LSMCYKTGQPILFVGTGQKYTHLRKLNVNYVIKALFG 589


>gi|158287925|ref|XP_309798.4| AGAP010894-PA [Anopheles gambiae str. PEST]
 gi|157019422|gb|EAA05506.5| AGAP010894-PA [Anopheles gambiae str. PEST]
          Length = 655

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD-DGV---REELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           +S+   +      ++ S+ L  D +    ++L D LI  ++   +AQK+ + +  K   +
Sbjct: 332 SSSRGGMFSMFKGLVGSKNLTRDDMQPALDKLRDHLIGKNVASDIAQKLCDSVAGKLEGR 391

Query: 78  DVSVQRVLYD-----VSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +     +       ++E + ++L P      L        + RP V+   GVNGVGK+T
Sbjct: 392 VIGTFDTIATTVRNTLTEALVQILSPKRRVDILRDCLEAKRAGRPFVMSFCGVNGVGKST 451

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+   + +  L V++AA DTFR+ A++QL+      +                    
Sbjct: 452 NLAKICFWLIENNLSVLIAACDTFRAGAVEQLRTHMRHLNALHPAERHGGRSMVQLYEKG 511

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA + A   K+DV++IDTAGR+ +N  LM  + K+I+V      + P  V
Sbjct: 512 YGKDAAGIAMEAIRYANDSKIDVVLIDTAGRMQDNEPLMRALAKLIKV------NEPDLV 565

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 566 LFVGEALVGNEAVDQLVKFNQALADYSSSERPHIIDGIVLTKFDTIDDKVGAAISMTYIT 625

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL+   AK     + 
Sbjct: 626 GQPIVFVGTGQTYTDLKALNAKAVVHALM 654


>gi|115476922|ref|NP_001062057.1| Os08g0480100 [Oryza sativa Japonica Group]
 gi|42408581|dbj|BAD09758.1| putative signal recognition particle receptor [Oryza sativa
           Japonica Group]
 gi|42409015|dbj|BAD10268.1| putative signal recognition particle receptor [Oryza sativa
           Japonica Group]
 gi|113624026|dbj|BAF23971.1| Os08g0480100 [Oryza sativa Japonica Group]
 gi|125561923|gb|EAZ07371.1| hypothetical protein OsI_29622 [Oryza sativa Indica Group]
 gi|215678702|dbj|BAG95139.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 86/331 (25%), Positives = 147/331 (44%), Gaps = 38/331 (11%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           N   + +   W   + K  A           +++    +     + L+D L+  ++   +
Sbjct: 309 NSGASQKKKGWFSSMFKSIAG---------NNVLEKSDIQPA-LKALKDRLMTKNVAEEI 358

Query: 63  AQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN----------WDFSHRP 111
           A+K+ E +      K + S  R+   V   + + L+ +  P                 +P
Sbjct: 359 AEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVHAAKERGKP 418

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +VI+ VGVNGVGK+T + K++  +    L V LAA DTFRS A++QL+  A R       
Sbjct: 419 YVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFRSGAVEQLRTHARRLQIPIFE 478

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K+I +      ++P 
Sbjct: 479 KGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINL------NSPD 532

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVV 280
            VL V +A  G +A+ Q+  F+                G+++TK D    + G  + +V 
Sbjct: 533 LVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFDTIDDKVGAALSMVY 592

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
               PV F+G G+   DL+    K     + 
Sbjct: 593 ISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 623


>gi|119871975|ref|YP_929982.1| signal recognition particle-docking protein FtsY [Pyrobaculum
           islandicum DSM 4184]
 gi|119673383|gb|ABL87639.1| signal recognition particle-docking protein FtsY [Pyrobaculum
           islandicum DSM 4184]
          Length = 307

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 126/257 (49%), Gaps = 17/257 (6%)

Query: 68  EELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILV 116
           EEL  +     V         V   V E +  +L  +       +        RP V++ 
Sbjct: 56  EELKKRLVGIKVPRFGDREAAVKKAVYEALLNVLGDVPDVDFYKEAREMLEKTRPFVVMF 115

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G NG GKTT + KL+  + + G +V+ AA DTFR+ A +QL+    R     V    GS
Sbjct: 116 LGPNGYGKTTTLAKLAFHLQEMGFRVVAAAADTFRAGAREQLEEHGRRVGFRVVGGAYGS 175

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+AY+A + A+++    ++IDTAGR+H ++ LM  + K+ RV +      PH  + V
Sbjct: 176 DPAAVAYDAIQHAKSRGYHFVLIDTAGRMHTDTNLMDELRKIQRVAE------PHRSIFV 229

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
            DA  G  AL   + +       G+I TK+D   +GG ++  +   K PVYFLGVG+   
Sbjct: 230 FDAQLGNEALEIAKYYSKYVNIDGMIATKVDAYPKGGSILTFIYVLKRPVYFLGVGQTYR 289

Query: 297 DLEPFVAKDFSAVITGC 313
           DL  F   ++ + +   
Sbjct: 290 DLVKFSKAEYISQLLAL 306


>gi|42408582|dbj|BAD09759.1| putative signal recognition particle receptor [Oryza sativa
           Japonica Group]
 gi|42409016|dbj|BAD10269.1| putative signal recognition particle receptor [Oryza sativa
           Japonica Group]
          Length = 610

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 86/331 (25%), Positives = 147/331 (44%), Gaps = 38/331 (11%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           N   + +   W   + K  A           +++    +     + L+D L+  ++   +
Sbjct: 295 NSGASQKKKGWFSSMFKSIAG---------NNVLEKSDIQPA-LKALKDRLMTKNVAEEI 344

Query: 63  AQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN----------WDFSHRP 111
           A+K+ E +      K + S  R+   V   + + L+ +  P                 +P
Sbjct: 345 AEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVHAAKERGKP 404

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +VI+ VGVNGVGK+T + K++  +    L V LAA DTFRS A++QL+  A R       
Sbjct: 405 YVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFRSGAVEQLRTHARRLQIPIFE 464

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K+I +      ++P 
Sbjct: 465 KGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINL------NSPD 518

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVV 280
            VL V +A  G +A+ Q+  F+                G+++TK D    + G  + +V 
Sbjct: 519 LVLFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFDTIDDKVGAALSMVY 578

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
               PV F+G G+   DL+    K     + 
Sbjct: 579 ISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 609


>gi|216264142|ref|ZP_03436134.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 156a]
 gi|225549704|ref|ZP_03770669.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 118a]
 gi|215980615|gb|EEC21422.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 156a]
 gi|225369664|gb|EEG99112.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 118a]
 gi|312149544|gb|ADQ29615.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi N40]
          Length = 281

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/286 (30%), Positives = 166/286 (58%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + E I ++  S++  + V E LED+L+ SDI   +  +I+ +L  ++   + ++   +  
Sbjct: 3   ILEKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKLTKEKNENEKTI---IGK 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A 
Sbjct: 59  LKELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAA 115

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N
Sbjct: 116 DTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQN 175

Query: 208 NSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + K+  V+ +   +    +  + V+D+T G+NA  Q E+F+      G I+TK
Sbjct: 176 KENLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGTIITK 235

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +D +++ G ++ I    + P+YF   GE I D++ F   ++   + 
Sbjct: 236 LDSSSKAGTILNISKILEKPIYFTTFGEKIEDIKEFDINEYFNKLL 281


>gi|288559662|ref|YP_003423148.1| signal recognition particle receptor FtsY [Methanobrevibacter
           ruminantium M1]
 gi|288542372|gb|ADC46256.1| signal recognition particle receptor FtsY [Methanobrevibacter
           ruminantium M1]
          Length = 576

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 149/299 (49%), Gaps = 20/299 (6%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIR----SDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           K K G    I  + + +   E++   L      SD+ + V+  +V+ +      + +   
Sbjct: 283 KGKGGFLSFIREKTISEDDVEDILFELELGLLESDVAMDVSSVVVDSVKNDLVGQKIKRS 342

Query: 83  RVLYD-----VSELIHKMLMPLSKPFNWDFSHR-----PHVILVVGVNGVGKTTVIGKLS 132
             + +     + + ++ ++    K        +     P V+++VG+NG GKTT IGKL+
Sbjct: 343 SDIEEYTYEALKKAVYNIINIEGKSMTELLEEKVAQGEPLVVMLVGINGTGKTTTIGKLA 402

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                 G   ++AA DTFR+ AI+Q+   AD+     +  E GSD AA+A++A + A+AK
Sbjct: 403 NFYIKKGYTPVIAASDTFRAGAIEQVAYHADKLGVKLIKHEKGSDPAAVAFDAVQHAKAK 462

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             ++++IDTAGR+  N+ LM  + K+ RV K      P  V+ V DA TG +A  Q   F
Sbjct: 463 GKELVLIDTAGRMQTNTNLMDEMKKIRRVSK------PDLVVFVGDALTGNDATEQARKF 516

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +      G+I+TK D  ++GG  + +    + P+ FLG+G+  +D++ +        I 
Sbjct: 517 NEAIDIDGVILTKADADSKGGAALSVGYIIQKPILFLGMGQSYDDIKEYDPDWMLEQIF 575


>gi|330980008|gb|EGH78274.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 369

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/185 (38%), Positives = 114/185 (61%), Gaps = 2/185 (1%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRR-LDDGVREELEDLLIRSDIGVAVAQKIVE 68
            + +  +L +G + TS  + EG+  +   ++ +DD + EE+E  L+ +D+GV     I++
Sbjct: 185 KVGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLEEIETRLLTADVGVEATSVIIK 244

Query: 69  ELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K   K ++  + LY  +   +  ML P+ +P      HRP VILVVGVNG GKTT 
Sbjct: 245 SLTQKVARKQLTDAQALYTSLQGELAAMLKPVEQPLVIKSEHRPFVILVVGVNGAGKTTT 304

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     +    G+D+A++ ++A +
Sbjct: 305 IGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHTGADSASVIFDAVQ 364

Query: 188 QAQAK 192
            A+A+
Sbjct: 365 AAKAR 369


>gi|312148247|gb|ADQ30906.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi JD1]
          Length = 281

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/286 (30%), Positives = 167/286 (58%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + E I ++  S++  + V E LED+L+ SDI   +  +I+ +L  ++   + ++   +  
Sbjct: 3   ILEKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKLTKEKNENEKTI---IGK 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A 
Sbjct: 59  LKELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAA 115

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N
Sbjct: 116 DTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQN 175

Query: 208 NSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + K+  V+ +   +    +  + V+D+T G+NA  Q E+F+      G+I+TK
Sbjct: 176 KENLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITK 235

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +D +++ G ++ I    + P+YF   GE I D++ F   ++   + 
Sbjct: 236 LDSSSKAGTILNISKILEKPIYFTTFGEKIEDIKEFDINEYFNKLL 281


>gi|302542219|ref|ZP_07294561.1| signal recognition particle FtsY [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459837|gb|EFL22930.1| signal recognition particle FtsY [Streptomyces himastatinicus ATCC
           53653]
          Length = 405

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 163/315 (51%), Gaps = 22/315 (6%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
             + +L    + +   L +G+  ++S   LDD   EE+ED L+ +D+GVA  Q++VE L 
Sbjct: 98  GRLVRLRARLSRSQTTLGKGLLTLLSREHLDDDTWEEIEDTLLTADVGVAPTQELVERLR 157

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK------- 124
            +           L  +       L+        +     H    VG NG  K       
Sbjct: 158 ERVKVLGTRTPDELRGLLREELLHLVG------TEADRTVHTEGGVGTNGEEKPGVVMVV 211

Query: 125 -------TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
                  TT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D
Sbjct: 212 GVNGTGKTTTTGKLARVLVADGKSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGD 271

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++ ++A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV+++        VL VL
Sbjct: 272 PASVGFDAVKEGIAESADVVLIDTAGRLHTKTGLMDELGKVKRVVEKH--GTVDEVLLVL 329

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   TG+++TK+DGTA+GG ++ +     +PV  +G+GEG +D
Sbjct: 330 DATTGQNGLVQARVFREVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADD 389

Query: 298 LEPFVAKDFSAVITG 312
           L PF  + F   + G
Sbjct: 390 LAPFEPEAFVDALIG 404


>gi|111114898|ref|YP_709516.1| signal recognition particle-docking protein FtsY [Borrelia afzelii
           PKo]
 gi|216263934|ref|ZP_03435928.1| signal recognition particle-docking protein FtsY [Borrelia afzelii
           ACA-1]
 gi|110890172|gb|ABH01340.1| signal recognition particle-docking protein FtsY [Borrelia afzelii
           PKo]
 gi|215979978|gb|EEC20800.1| signal recognition particle-docking protein FtsY [Borrelia afzelii
           ACA-1]
          Length = 281

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 85/286 (29%), Positives = 166/286 (58%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + + I ++  ++   + V E LED+L+ SDI   +  +I+ +L  ++   + ++   +  
Sbjct: 3   IFKKIKNLFKNKE-QENVIENLEDILLESDINNEIVIEIINKLTKEKNKNEKTI---IEK 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A 
Sbjct: 59  LKELLSDYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAA 115

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N
Sbjct: 116 DTFRAAAIEQMKIYGEQIGIRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQN 175

Query: 208 NSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + K+  V+ +   + +  +  + V+D+T G+N   Q E+F+      G+I+TK
Sbjct: 176 KENLIKELQKINNVILKQMKNTNINYQKILVIDSTIGKNTNSQAEIFNKAIEIDGIIITK 235

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +D ++R G +I I    K P+YF   GE + D++ F   ++   + 
Sbjct: 236 LDSSSRAGAIINISKILKKPIYFTTFGEKLEDIKEFDINEYLNKLL 281


>gi|207092645|ref|ZP_03240432.1| cell division protein (ftsY) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 208

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 81/201 (40%), Positives = 123/201 (61%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P V L+VGVNG GKTT I KL+K       K +L AGDTFR+AA+ QL++W ++ +   +
Sbjct: 1   PLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLLGAGDTFRAAAVKQLQLWGEKLNIQVI 60

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++ GSD ++LAY   + A AK +D + IDTAGRLHN + L   + K+ R   ++   AP
Sbjct: 61  SAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKVLKDAP 120

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                +LD T G + L Q ++FH      G+IMTK+DGT++GG ++ ++   K+P+ +LG
Sbjct: 121 FYKFLILDGTQGSSGLTQAKIFHETLALDGVIMTKLDGTSKGGAILSVLYELKLPILYLG 180

Query: 291 VGEGINDLEPFVAKDFSAVIT 311
           +GE  +DL  F  + F   + 
Sbjct: 181 MGEKEDDLIAFDEERFIEDLV 201


>gi|295698285|ref|YP_003602940.1| Ffh protein [Candidatus Riesia pediculicola USDA]
 gi|291157088|gb|ADD79533.1| Ffh protein [Candidatus Riesia pediculicola USDA]
          Length = 444

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 154/308 (50%), Gaps = 17/308 (5%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
               ++K F      +++    I   + L     ++++ LLI SD+ V V +KI++++  
Sbjct: 1   MFENISKSFLDLFKTIRD--RGIFKKKFLKHH-LDKIKTLLIDSDVSVMVVKKILQKIEK 57

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPL--SKPFNW-DFSHRPH-VILVVGVNGVGKTTV 127
           +     +        D  E++ K L+ +   K FN  DFS R H +IL+VG  G GKTT 
Sbjct: 58  EILKSKIEESFDPSGDFIEIVRKTLLQIIGEKEFNLFDFSKRNHLIILLVGSKGSGKTTT 117

Query: 128 IGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC--SEIGSDAAALAYE 184
             K+ + +      KV+LA+ DT R AA DQLK  ++ +  DF    S+    +  LA  
Sbjct: 118 ASKIGRVLRKKYNKKVLLASTDTGRPAAFDQLKQLSEYSKVDFFEVNSKKSRSSFDLAKF 177

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           +  + ++++ D LI+DT G +H +   +  I K+ +++   D         V+D+  GQ+
Sbjct: 178 SIARFKSERYDTLIVDTEGCMHTDLEKLDEIQKIHKIVNPSD------TFFVIDSMVGQD 231

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           A+     F+      G+I+TKMDG +RGG  + +      P+ FLG GE I+ +EPF  K
Sbjct: 232 AIHSSRTFNKKFPLDGIILTKMDGDSRGGCALSVKEVTGKPIAFLGTGEHISLIEPFHPK 291

Query: 305 DFSAVITG 312
              + I G
Sbjct: 292 KIISKILG 299


>gi|224533025|ref|ZP_03673631.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi WI91-23]
 gi|224512019|gb|EEF82414.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi WI91-23]
          Length = 281

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 85/286 (29%), Positives = 167/286 (58%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + E I ++  S++  + V E LED+L+ SDI   +  +I+ +L  ++   + ++   +  
Sbjct: 3   ILEKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKLTKEKNENEKTI---IGK 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A 
Sbjct: 59  LKELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAA 115

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N
Sbjct: 116 DTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQN 175

Query: 208 NSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + K+  V+ +   +    +  + V+D+T G+NA  Q E+F+      G+I+TK
Sbjct: 176 KENLIKELQKINNVILKQIKNSDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITK 235

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +D +++ G ++ I    + P+YF   GE + D++ F   ++   + 
Sbjct: 236 LDSSSKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281


>gi|4538527|emb|CAB39375.1| signal recognition particle [Corynebacterium glutamicum]
          Length = 263

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/269 (25%), Positives = 122/269 (45%), Gaps = 30/269 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S S +L   ++ +    +L +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FESLSDRLNSALSGLRGKGKLTEADINATTREIRLALLEADVSLTVVRAFINRIKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E + ++L   ++  +    + P VI++ G+ G GKTT+ GKL
Sbjct: 62  AEVSQALNPAQQVIKIVNEELVQILGGETRRLSL-AKNPPTVIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI--------------GSD 177
           SK +   G   ML A D  R  A+ QL+I  +R        +                 D
Sbjct: 121 SKHLVKQGHTPMLVACDLQRPGAVQQLQIVGERAGVTTFAPDPGTSIDSLEHEMGTSHGD 180

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A    ++A+  + D++I+DTAGRL  +  LM     +   +       P  VL V+
Sbjct: 181 PVEVARAGIEEAKRTQHDIVIVDTAGRLGIDETLMTQARNIREAIN------PDEVLFVI 234

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKM 266
           D+  GQ+A+   E F      TG+++TK+
Sbjct: 235 DSMIGQDAVDTAEAFRDGVDFTGVVLTKL 263


>gi|308799976|ref|XP_003074769.1| SrrA undefined product (IC) [Ostreococcus tauri]
 gi|116061309|emb|CAL52027.1| SrrA undefined product (IC) [Ostreococcus tauri]
          Length = 502

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 32/333 (9%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL---DDGVREEL---EDLLIRSDI 58
           K  S    +  K+ +  ++++ +       + S   L   +D VR  +   +  L++ ++
Sbjct: 174 KHQSLKEPYCDKVQQNISTSAGEFAGWCRRLFSMGTLTIHEDSVRSIMFSFKKKLMKRNV 233

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVL-----YDVSELIHKMLMPLSK-----PFNWDFS 108
              V+  +V+E+  K   K+++    +       + E + ++L    K       N    
Sbjct: 234 TSEVSDMLVDEVSRKLIGKEITTFESVMTIIHRSLEEAVIRVLSSARKVDILHDINRVGK 293

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            RP+VI  VGVNGVGK+T + KL   ++     VM+AA DTFR+ A++QL+    R    
Sbjct: 294 SRPYVITFVGVNGVGKSTSLSKLVYWLTQQNFSVMVAACDTFRAGAVEQLRTHCHRLGCA 353

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                   D + +A +A +QA  + +DV++IDTAGR+ +N  LM  + K++ V K     
Sbjct: 354 LYERGYERDPSTIAQQAIQQATRQNIDVVMIDTAGRMQDNEPLMRSLAKLLNVNK----- 408

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAG---------TTGLIMTKMDG-TARGGGLIPI 278
            P     V DA  G + + Q+  F                G+ +TK D    + G  + +
Sbjct: 409 -PDFTFFVGDALVGNDGVSQILQFERRLQELTELSGGVIDGIFLTKFDTIDEKVGAALSL 467

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           V    IPV F+G G+   DL  F A+  +  + 
Sbjct: 468 VHASAIPVLFVGTGQTYGDLRRFQAEYIAEALL 500


>gi|299783402|gb|ADJ41400.1| Sec family type I general secretory pathway protein signal
           recognition particle protein [Lactobacillus fermentum
           CECT 5716]
          Length = 268

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 118/248 (47%), Gaps = 17/248 (6%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD-GVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L++ +  +    ++ +  +RE   E+   L+ +D+   V +  V+ +  K  
Sbjct: 2   AFEGLTERLQKAMEKLRRKPKVTEADLRETMREIRLALLEADVNFKVVKDFVKTVREKAA 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V++ + +M+   + P N   +H P VI++VG+ G GKTT  GK
Sbjct: 62  GAEVLKGLNPAQQIVKIVNDELTEMMGETATPLNKS-AHIPTVIMMVGLQGAGKTTTAGK 120

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+K++      + +  A D +R AAI QL+  A              D   +  +  + A
Sbjct: 121 LAKRLKKEENARPLFIAADVYRPAAITQLQQVAASIDVPVFEMGTDVDPVEIVRQGMEVA 180

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           + K  D +IIDTAGRL  +  LM  + K+  + K      P  +L V+DA TGQNA+   
Sbjct: 181 KEKHNDYVIIDTAGRLQIDEQLMEELAKIKELAK------PDEILLVVDAMTGQNAVNTA 234

Query: 250 EMFHAVAG 257
           + F     
Sbjct: 235 QGFDDQLD 242


>gi|15594422|ref|NP_212210.1| cell division protein, putative [Borrelia burgdorferi B31]
 gi|2687952|gb|AAC66458.1| cell division protein, putative [Borrelia burgdorferi B31]
          Length = 281

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 85/286 (29%), Positives = 167/286 (58%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + E I ++  S++  + V E LED+L+ SDI   +  +I+ +L  ++   + ++   +  
Sbjct: 3   ILEKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKLTKEKNENEKTI---IGK 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A 
Sbjct: 59  LKELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAA 115

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N
Sbjct: 116 DTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQN 175

Query: 208 NSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + K+  V+ +   +    +  + V+D+T G+NA  Q E+F+      G+I+TK
Sbjct: 176 KENLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITK 235

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +D +++ G ++ I    + P+YF   GE + D++ F   ++   + 
Sbjct: 236 LDSSSKAGTILNISKILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281


>gi|195941815|ref|ZP_03087197.1| cell division protein, putative [Borrelia burgdorferi 80a]
          Length = 281

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 167/286 (58%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + E I ++  S++  + V E LED+L+ SDI   +  +I+ +L  ++   + ++   +  
Sbjct: 3   ILEKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKLTKEKNENEKTI---IGK 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A 
Sbjct: 59  LKELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAA 115

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N
Sbjct: 116 DTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQN 175

Query: 208 NSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + K+  V+ +   +    +  + V+D+T G+NA  Q E+F+      G+I+TK
Sbjct: 176 KENLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITK 235

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +D +++ G +I I    + P+YF   GE I D++ F   ++   + 
Sbjct: 236 LDSSSKAGTIINISKILEKPIYFTTFGEKIEDIKEFDINEYFNKLL 281


>gi|322779356|gb|EFZ09612.1| hypothetical protein SINV_09353 [Solenopsis invicta]
          Length = 654

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 158/349 (45%), Gaps = 53/349 (15%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSD 57
           S+Q+   +S   ++K       TS  +      ++ S+ L       V E+L+D LI  +
Sbjct: 319 SDQEEIEQSKQQVQK------KTS--MFSMFKSLVGSKSLKQDDMLPVLEKLKDHLITKN 370

Query: 58  IGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP------LSKPFNWD 106
           +   +AQK+ + + TK   K     D     V   +++ + ++L P      L       
Sbjct: 371 VAADIAQKLCDSVGTKLEGKILGTFDSVANTVKTTLTDALVQILSPKRRIDILRDALEAK 430

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            S +P+V+   GVNGVGK+T + K+   + +   +V++AA DTFR+ A++QL+      +
Sbjct: 431 KSSKPYVMTFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAGAVEQLRTHMRHLN 490

Query: 167 -------------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                                G DAA +A EA + A+  ++DV+++DTAGR+ +N  LM 
Sbjct: 491 ALHPPEKHGNQSMVQLYEKGYGKDAAGIAMEAIRFAKDSRIDVVLVDTAGRMQDNEPLMR 550

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIM 263
            + K+I+V      + P  VL V +A  G  A+ Q+  F+                G+++
Sbjct: 551 ALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYSQSANPHIIDGIVL 604

Query: 264 TKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           TK D    + G  I +      P+ F+G G+   DL+   AK     + 
Sbjct: 605 TKFDTIDDKVGAAITMTYITGQPIVFVGTGQTYTDLKSLNAKAVVHALM 653


>gi|330946056|gb|EGH47332.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 205

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 88/200 (44%), Positives = 128/200 (64%), Gaps = 1/200 (0%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHK 94
           +  + +DD + EE+E  L+ +D+GV     I++ L  K   K ++  + LY  +   +  
Sbjct: 6   LGKKAIDDDLLEEIETRLLTADVGVEATSVIIKSLTQKVARKQLTDAQALYTSLQGELAA 65

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           ML P+ +P      HRP VILVVGVNG GKTT IGKL+KK+   G KVMLAAGDTFR+AA
Sbjct: 66  MLKPVEQPLVIKSEHRPFVILVVGVNGAGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAA 125

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           ++QL++W +R     +    G+D+A++ ++A + A+A+ +DVLI DTAGRLH    LM  
Sbjct: 126 VEQLQVWGERNHIPVIAQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEE 185

Query: 215 IGKMIRVLKRLDPHAPHSVL 234
           + K+ RV+ +LD  APH VL
Sbjct: 186 LKKVRRVIGKLDADAPHEVL 205


>gi|326422437|gb|EGD71836.1| Putative signal recognition particle protein [Candidatus
           Parvarchaeum acidiphilum ARMAN-4_'5-way FS']
          Length = 437

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 137/295 (46%), Gaps = 16/295 (5%)

Query: 20  GFASTSLKLKEGITDII---SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            F   S +L+EGI  ++    + ++ + V  +++  L   D+  A  +K+++++     +
Sbjct: 2   AFEGLSNRLREGIKKLLNSTGNEKI-EEVLTDIQTALTEGDVDKATIEKLMKKIRDDIKS 60

Query: 77  KDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                      V ++I+  L+ +  ++    +    P  IL+VG+ G GKTT   KL+  
Sbjct: 61  NKGKGLVTREKVIDVIYNNLVEIVGNEETKINIDSVPFKILLVGLFGSGKTTTAAKLANY 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +V+L   DTFR AA  QL+  + + +          D       A    +    
Sbjct: 121 YKKRGYRVLLLGLDTFRPAAYQQLEQLSKQINVKIAGGG--DDPVKAIKNAIGSFK--NF 176

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           D++I D+AGR   ++ L+  I  +   LK      P++V  V+ A  GQNA  QV+ FH 
Sbjct: 177 DIVIADSAGRDILDNALVKEIKLVKETLK------PNNVTLVIPADLGQNASIQVKGFHE 230

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           +     +I+TK DGTA GGG +         V F+G GE IND E F  K F + 
Sbjct: 231 LLDINNIILTKTDGTANGGGALTAAYISGAKVTFIGTGEKINDFEEFNPKKFVSK 285


>gi|319441354|ref|ZP_07990510.1| signal recognition particle-docking protein FtsY [Corynebacterium
           variabile DSM 44702]
          Length = 516

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 176/312 (56%), Gaps = 6/312 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +++A      + +L    + +   +  G+  I+S+  LD+   EE+ED+LI +D+G    
Sbjct: 208 EEIA-PVEGRLGRLRGSLSKSQNVIGRGVLGILSAGDLDEDAWEEIEDMLIMADLGTKTT 266

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFN-WDFSHRPHVILVVGVN 120
             +VE+L  +   + V  +     +    LI      L +  +   ++ +P VI+VVGVN
Sbjct: 267 VAVVEKLRDRIATEGVENEAQARAMLRECLIEAARPELDRSIHAMPYNGKPAVIMVVGVN 326

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT  GKLS+ +   G  V+L A DTFR+AA DQL+ W  R  A+ V  + G+D A+
Sbjct: 327 GTGKTTTTGKLSRVLVGMGHSVLLGAADTFRAAAADQLETWGRRVGAETVRGKEGADPAS 386

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A++A  +   + VDV+++DTAGRLH +  LM  +GK+ RV+++        V+ VLDAT
Sbjct: 387 VAFDAVAKGVEEGVDVVVVDTAGRLHTSVGLMDQLGKVKRVVEKKAK--VDEVILVLDAT 444

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
            GQN L Q   F  V   +G+ +TK+DG+A+GG +  +     +PV  +G+GEG +DL P
Sbjct: 445 VGQNGLMQARTFRDVVDISGVALTKLDGSAKGGIVFQVQEELGVPVKLVGLGEGADDLAP 504

Query: 301 FVAKDFSAVITG 312
           F  + F   + G
Sbjct: 505 FEVESFVDALLG 516


>gi|289675158|ref|ZP_06496048.1| Signal recognition particle protein [Pseudomonas syringae pv.
           syringae FF5]
          Length = 281

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 7/190 (3%)

Query: 127 VIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
             GKL++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A
Sbjct: 1   TAGKLARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAA 60

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K+A+ K +DV+I+DTAGRLH +  +M  I  +   +K          L V+DA TGQ+A
Sbjct: 61  IKEARLKFIDVVIVDTAGRLHVDVEMMGEIQALHAAVKPA------ETLFVVDAMTGQDA 114

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
               + F      TG+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF    
Sbjct: 115 ANTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDR 174

Query: 306 FSAVITGCLD 315
            ++ I G  D
Sbjct: 175 IASRILGMGD 184


>gi|218249622|ref|YP_002374606.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi ZS7]
 gi|221217460|ref|ZP_03588931.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 72a]
 gi|223889106|ref|ZP_03623695.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 64b]
 gi|224533927|ref|ZP_03674512.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi CA-11.2a]
 gi|225549275|ref|ZP_03770248.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 94a]
 gi|226320752|ref|ZP_03796308.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 29805]
 gi|226322012|ref|ZP_03797537.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi Bol26]
 gi|218164810|gb|ACK74871.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi ZS7]
 gi|221192738|gb|EEE18954.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 72a]
 gi|223885355|gb|EEF56456.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 64b]
 gi|224512930|gb|EEF83296.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi CA-11.2a]
 gi|225370133|gb|EEG99573.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 94a]
 gi|226232602|gb|EEH31356.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi Bol26]
 gi|226233807|gb|EEH32532.1| signal recognition particle-docking protein FtsY [Borrelia
           burgdorferi 29805]
          Length = 281

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 86/286 (30%), Positives = 167/286 (58%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + E I ++  S++  + V E LED+L+ SDI   +  +I+ +L  ++   + ++   +  
Sbjct: 3   ILEKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKLTKEKNENEKTI---IGK 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A 
Sbjct: 59  LKELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAA 115

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N
Sbjct: 116 DTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQN 175

Query: 208 NSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + K+  V+ +   +    +  + V+D+T G+NA  Q E+F+      G+I+TK
Sbjct: 176 KENLIKELQKINNVILKQIKNTDINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITK 235

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +D +++ G +I I    + P+YF   GE + D++ F   ++   + 
Sbjct: 236 LDSSSKAGTIINISKILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281


>gi|321473979|gb|EFX84945.1| hypothetical protein DAPPUDRAFT_300824 [Daphnia pulex]
          Length = 621

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 147/328 (44%), Gaps = 45/328 (13%)

Query: 23  STSLKLKEGITDIISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
                +     +++ S+ + + V     +++ D LI  ++   +A K+ + +  K   K 
Sbjct: 299 KKQTGIFSLFKNLVGSKTITEEVMTPVLDKMRDHLIAKNVASEIAGKLCDSVAAKLNGKV 358

Query: 79  VSVQRVLYD-----VSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +     L +     ++E + ++L P      L   F     +RP+V+   GVNGVGK+T 
Sbjct: 359 LGTFESLANTVKASLTESLVQILSPRRRVDILRDVFESQRQNRPYVMSFCGVNGVGKSTN 418

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEI 174
           + K+   + +   +V++AA DTFR+ A++QL+      +                     
Sbjct: 419 LAKICFWLIENNFRVLIAACDTFRAGAVEQLRTHMRHLNSIHPPEKHGGRQMVQLYEKGY 478

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A EA   A+   +DV++IDTAGR+ +N  LM  + K+I+V      + P  VL
Sbjct: 479 GKDAAGIALEAINYARDGGIDVVMIDTAGRMQDNEPLMRALAKLIKV------NEPDLVL 532

Query: 235 QVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHK 283
            V +A  G  A+ Q+  F+                G+++TK D    + G  I +     
Sbjct: 533 FVGEALVGNEAVDQLVKFNQALADYSNSENPHTIDGIVLTKFDTIDDKVGAAISMTYITG 592

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            P+ F+G G+   DL+    K   +++ 
Sbjct: 593 QPIVFIGTGQTYADLKTLNVKAVVSILM 620


>gi|258653316|ref|YP_003202472.1| signal recognition particle-docking protein FtsY [Nakamurella
           multipartita DSM 44233]
 gi|258556541|gb|ACV79483.1| signal recognition particle-docking protein FtsY [Nakamurella
           multipartita DSM 44233]
          Length = 321

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 115/315 (36%), Positives = 177/315 (56%), Gaps = 12/315 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +++A  +   + KL    + +       +  ++ +  LDD   EE+ED L+ +D+G A A
Sbjct: 12  EEIA-PTAGRLSKLRGRLSRSQNAFGRSLLGLLGAGTLDDDSWEEVEDTLLMADLGAAAA 70

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF------NWDFSHRPHVILVV 117
            +I E+L     A  V+          L+ ++L+    P             RP V+L+V
Sbjct: 71  AEITEKLRGAVAAHGVTDA---ASARALLRRVLIEAVDPTMDRAVRALPHDGRPSVLLIV 127

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNG GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V ++ G+D
Sbjct: 128 GVNGTGKTTTTGKLARVLVADGRHVVLGAADTFRAAAADQLQTWGERAGAAVVRADAGTD 187

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++A++A K+  A   D ++IDTAGRLH  + LM  +GK+ RV+++        VL VL
Sbjct: 188 PASVAFDAVKRGIADGADAVLIDTAGRLHTKTGLMDELGKVKRVVEKQAE--VDEVLLVL 245

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DATTGQN L Q  +F  V   +G+++TK+DGTA+GG ++ +  T  +PV  +G+GEG +D
Sbjct: 246 DATTGQNGLVQATVFADVVDISGIVLTKLDGTAKGGIVVAVQRTLGVPVKLVGLGEGPDD 305

Query: 298 LEPFVAKDFSAVITG 312
           L PF    F   + G
Sbjct: 306 LAPFEPAAFVDALLG 320


>gi|326524808|dbj|BAK04340.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 606

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 146/327 (44%), Gaps = 37/327 (11%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           ++    W   + +  A ++ +L+E  +D+           + L+D L+  ++   +A+K+
Sbjct: 294 STTKDGWFSSMFRSIAGSNAELEE--SDL-------QPALKSLKDRLMTKNVAEEIAEKL 344

Query: 67  VEELLTKRYAKDVSVQRVLYD-----VSELIHKMLMP------LSKPFNWDFSHRPHVIL 115
            E +      K +     +       + E + ++L P      L           P+VI+
Sbjct: 345 CESVAASLLGKKLGSFTRISSSVQTAMEEALVRILTPRRSIDVLRDVHAAKDRGTPYVIV 404

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VGVNGVGK+T + K++  +    L V LAA DTFRS A++QL+  A R           
Sbjct: 405 FVGVNGVGKSTNLAKVAYWLLQHDLSVTLAACDTFRSGAVEQLRTHARRLQIPIFEKGYE 464

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D A +A  A ++A   K DV+++DTAGR+ +N  LM  + K+I +      + P  VL 
Sbjct: 465 RDPAVVAKGAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINL------NNPDLVLF 518

Query: 236 VLDATTGQNALRQVEMFHAVA----------GTTGLIMTKMDG-TARGGGLIPIVVTHKI 284
           V +A  G +A+ Q+  F                 G+++TK D    + G  + +V     
Sbjct: 519 VGEALVGNDAVDQLTKFSQKLADLSTAPTARSIDGILLTKFDTIDDKVGAALSMVYVSGA 578

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVIT 311
           PV F+G G+   DL+    K     + 
Sbjct: 579 PVMFVGCGQSYTDLKKLNVKSIVNTLL 605


>gi|212275688|ref|NP_001130574.1| signal recognition particle receptor homolog1 [Zea mays]
 gi|194689526|gb|ACF78847.1| unknown [Zea mays]
 gi|194707804|gb|ACF87986.1| unknown [Zea mays]
          Length = 625

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 145/329 (44%), Gaps = 38/329 (11%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +   +   W   + +  +           +++    L     + L+D L+  ++   +A+
Sbjct: 312 EDGPKKKGWFSSMFQSISG---------NNVLEKSDLQPA-LKALKDRLMAKNVAEEIAE 361

Query: 65  KIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN----------WDFSHRPHV 113
           K+ E +      K + S  R+   V   +   L+ +  P                 RP+V
Sbjct: 362 KLCESVAASLEGKKLGSFTRISSTVQTAMEDALLRILTPRRSIDILRDVHAAKERGRPYV 421

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+ VGVNGVGK+T + K++  +    L V LAA DTFRS A++QL+  A R         
Sbjct: 422 IVFVGVNGVGKSTNLAKVAYWLLQHNLSVTLAACDTFRSGAVEQLRTHARRLQIPIFEKG 481

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K+I +      ++P  V
Sbjct: 482 YEKDPAVVAREAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINL------NSPDLV 535

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G +A+ Q+  F+                G+++TK D    + G  + +V   
Sbjct: 536 LFVGEALVGNDAVDQLTKFNQKLADLSAVPTARLIDGILLTKFDTIDDKVGAALSMVYIS 595

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             PV F+G G+   DL+    K     + 
Sbjct: 596 GAPVMFVGCGQSYTDLKKLNVKSIVKTLL 624


>gi|156541190|ref|XP_001599499.1| PREDICTED: similar to signal recognition particle receptor alpha
           subunit [Nasonia vitripennis]
          Length = 617

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 149/328 (45%), Gaps = 45/328 (13%)

Query: 23  STSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
             S  +     +++ ++ L +     V E+L+D LI  ++   +AQK+ + +  K   K 
Sbjct: 295 KKSGGVFSIFKNLVGNKALKEEDMRPVLEKLKDHLISKNVAAEIAQKLCDSICVKLEGKV 354

Query: 79  VSVQRVLYD-----VSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +     + +     +++ + ++L P      L   F    + RP+V+   GVNGVGK+T 
Sbjct: 355 LGTFDSVANTVKASLTDALVQILSPKRRVDILRDAFEAKKNGRPYVMAFCGVNGVGKSTN 414

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEI 174
           + K+   + +   +V++AA DTFR+ A++QL+      +                     
Sbjct: 415 LAKICFWLIENNFRVLIAACDTFRAGAVEQLRTHMKHLNALHPPEKHGNMTMVQLYEKGY 474

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A EA + A   + DV+++DTAGR+ +N  LM  + K+I+V      + P  VL
Sbjct: 475 GKDAAGIAMEAIRFATDSRFDVVLVDTAGRMQDNEPLMRALAKLIKV------NEPDLVL 528

Query: 235 QVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHK 283
            V +A  G  A+ Q+  F+                G+++TK D    + G  I +     
Sbjct: 529 FVGEALVGNEAVDQLVKFNQALADYSNSTNPHIIDGIVLTKFDTIDDKVGAAISMTYITG 588

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            P+ F+G G+   DL+   AK     + 
Sbjct: 589 QPIVFVGTGQTYTDLKSLNAKAVVHALM 616


>gi|313231336|emb|CBY08451.1| unnamed protein product [Oikopleura dioica]
          Length = 587

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 80/322 (24%), Positives = 144/322 (44%), Gaps = 38/322 (11%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++TS  +      ++S + L +   + +    +D LI  ++   +A K++  +  K   +
Sbjct: 271 SATSSSMLSMFKTLVSQKELTEASIDPILQKYKDNLISKNVASEIATKLISAVKNKLVGQ 330

Query: 78  DVSVQRVLYD-----VSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +     +       + E + ++L P      L    +     RP+ I   GVNGVGK+T
Sbjct: 331 TIGTFSSIKKAVFNGLEESLVQILTPRRRVDILRDVLHAKGEGRPYSITFCGVNGVGKST 390

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------ADFVCSEIGSDAAA 180
            + K+   + + G ++M+AA DTFR+ A++QLK    R +              G D A 
Sbjct: 391 NLAKICFWLVENGFRIMIAACDTFRAGAVEQLKTHVHRINGVHADSVKLFEQGYGKDPAT 450

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A  A   A+ +  DV +IDTAGR+ +N  LM  + K+I +      + P +VL V +A 
Sbjct: 451 IAMHAISAARDQGYDVCLIDTAGRMQDNEPLMRALAKLIAI------NRPDAVLFVGEAL 504

Query: 241 TGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFL 289
            G +A+ Q+  F+                G++++K D    + G  I +  T   P+ F+
Sbjct: 505 VGNDAIDQLTKFNKSLANHSQSNNPRLIDGIVLSKFDTIDDKVGAAISMTYTTGQPIVFI 564

Query: 290 GVGEGINDLEPFVAKDFSAVIT 311
           G G+   DL     K    ++ 
Sbjct: 565 GTGQTYKDLNSLNPKAVVNLLL 586


>gi|242037271|ref|XP_002466030.1| hypothetical protein SORBIDRAFT_01g050330 [Sorghum bicolor]
 gi|241919884|gb|EER93028.1| hypothetical protein SORBIDRAFT_01g050330 [Sorghum bicolor]
          Length = 624

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 86/329 (26%), Positives = 145/329 (44%), Gaps = 38/329 (11%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +   +   W   + +  A           +++    L     + L+D L+  ++   +A+
Sbjct: 311 EDGPKKKGWFSSMFQSIAG---------NNVLEKSDLQPA-LKALKDRLMAKNVAEEIAE 360

Query: 65  KIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN----------WDFSHRPHV 113
           K+ E +      K + S  R+   V   +   L+ +  P                 RP+V
Sbjct: 361 KLCESVAASLEGKKLGSFTRISSTVQTAMEDALLRILTPRRSIDILRDVHAAKERGRPYV 420

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+ VGVNGVGK+T + K++  +    L V LAA DTFRS A++QL+  A R         
Sbjct: 421 IVFVGVNGVGKSTNLAKVAYWLLQHNLSVTLAACDTFRSGAVEQLRTHARRLQIPIFEKG 480

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K+I +      ++P  V
Sbjct: 481 YEKDPAVVAREAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINL------NSPDLV 534

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G +A+ Q+  F+                G+++TK D    + G  + +V   
Sbjct: 535 LFVGEALVGNDAVDQLTKFNQKLADLSAVPTARLIDGILLTKFDTIDDKVGAALSMVYIS 594

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             PV F+G G+   DL+    K     + 
Sbjct: 595 GAPVMFVGCGQSYTDLKKLNVKSIVKTLL 623


>gi|224531980|ref|ZP_03672612.1| signal recognition particle-docking protein FtsY [Borrelia
           valaisiana VS116]
 gi|224511445|gb|EEF81851.1| signal recognition particle-docking protein FtsY [Borrelia
           valaisiana VS116]
          Length = 281

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 165/286 (57%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + E I ++  S +  + V E LE++L+ SDI   +  +I+ +L  ++   +   + ++  
Sbjct: 3   ILEKIKNLFKSNQ-QENVIENLEEILLESDINNEIVIEIINKLTKEKNKNE---EIIIEK 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A 
Sbjct: 59  LKELLSNYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAA 115

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+Q+KI+  +     +    GSD +A+ +++   A+ K  D LIIDTAGRL N
Sbjct: 116 DTFRAAAIEQMKIYGKQIGIRIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQN 175

Query: 208 NSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + K+  V+ +   + +  +  + V+D+T G+N   Q E+F+      G+I+TK
Sbjct: 176 KENLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNTNNQAEIFNNAIEIDGIIITK 235

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +D ++R G LI I    K P+YF   GE + D++ F   ++   + 
Sbjct: 236 LDSSSRAGTLINISKILKKPIYFTTFGEKLEDIKEFDINEYLNKLL 281


>gi|157877214|ref|XP_001686937.1| signal recognition particle receptor like protein [Leishmania major
           strain Friedlin]
 gi|68130012|emb|CAJ09320.1| putative signal recognition particle receptor like protein
           [Leishmania major strain Friedlin]
          Length = 605

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/315 (25%), Positives = 145/315 (46%), Gaps = 33/315 (10%)

Query: 24  TSLKLKEGITDIISSRRLD-DGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           +   L   +   + +R +D + +++   +L + LI  ++ V VA+ + + +      K +
Sbjct: 296 SRGCLATWLRSYVGTREVDAEDLKKIIPDLREKLIVKNVAVEVAEHVCKSVEASLAGKRL 355

Query: 80  SVQRVLYDVSE-----LIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                LY   E      + ++L P      L        + +P+ I++ GVNGVGK+T +
Sbjct: 356 GTFDSLYKTVEDAMMASLRRILQPKCEVNLLRNVAAAKAAGKPYSIVLCGVNGVGKSTSL 415

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            K++  +   G  V+LAAGDTFR  A++QL +              G+D + +A  A  Q
Sbjct: 416 AKIAYWLQQNGNSVLLAAGDTFRHGAVEQLGVHGRCLGVPIFQLGYGTDPSTVAAAAMAQ 475

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A  + +DV+++DTAGR+ ++   M  + K+I        + P  VL V +A  G N + Q
Sbjct: 476 ASKQHIDVVMVDTAGRMQDHESRMRALAKLI------HDNQPDLVLFVGEALVGNNGIDQ 529

Query: 249 VEMFHAVA-----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +  F+              G  G+++TK D    + G  + +V     P+ F+GVG+   
Sbjct: 530 LRKFNQCLVDFAPVGSQLRGIDGIVLTKFDTIDDKVGAALSMVYELGQPIVFVGVGQTYQ 589

Query: 297 DLEPFVAKDFSAVIT 311
           DL+    +   + + 
Sbjct: 590 DLKVIEPEVVVSALM 604


>gi|225552094|ref|ZP_03773034.1| signal recognition particle-docking protein FtsY [Borrelia sp. SV1]
 gi|225371092|gb|EEH00522.1| signal recognition particle-docking protein FtsY [Borrelia sp. SV1]
          Length = 281

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 169/286 (59%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + E I ++  S++  + V E LED+L+ SDI   +  +I+ +L  ++   + ++   +  
Sbjct: 3   ILEKIKNLFKSKQ-QENVIENLEDILLESDINNEIVIEIINKLTKEKNENEKTI---IGK 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A 
Sbjct: 59  LKELLSSYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAA 115

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ KK D LIIDTAGRL N
Sbjct: 116 DTFRAAAIEQMKIYGEQIGVRIISQNQGSDPSAVIFDSISSAKLKKHDALIIDTAGRLQN 175

Query: 208 NSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + K+  V+ +   + +  +  + V+D+T G+NA  Q E+F+      G+I+TK
Sbjct: 176 KENLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNANSQAEIFNKAIEIDGIIITK 235

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +D +++ G +I I    + P+YF   GE + D++ F   ++   + 
Sbjct: 236 LDSSSKAGTIINISKILEKPIYFTTFGEKLEDIKEFDINEYFNKLL 281


>gi|242086847|ref|XP_002439256.1| hypothetical protein SORBIDRAFT_09g003220 [Sorghum bicolor]
 gi|241944541|gb|EES17686.1| hypothetical protein SORBIDRAFT_09g003220 [Sorghum bicolor]
          Length = 588

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/318 (28%), Positives = 146/318 (45%), Gaps = 32/318 (10%)

Query: 18  TKG-FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           TKG F+S    +  G   +I    L     + L+D L+  ++   +A+K+ E +      
Sbjct: 278 TKGWFSSVFQSIAGG-NSVIERSDLQPA-LKALKDRLMTKNVAEEIAEKLCESVAASLEG 335

Query: 77  KDV----SVQRVLYDVSEL-IHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKT 125
           K      S    +    E  + ++L P      L        S RP+VI+ VGVNGVGK+
Sbjct: 336 KKQGSFTSTASTVQAAMEAALVRILTPSRSIDVLRDVHAAKDSGRPYVIVFVGVNGVGKS 395

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T + K++  +    L V LAA DTFRS A++QL+  A R            D A +A +A
Sbjct: 396 TNLAKVAYWLLQHDLTVTLAACDTFRSGAVEQLRTHARRLQIPVFEKGYQRDPAVVAKQA 455

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            ++A   + DV+++DTAGR+ +N  LM  + K+I V      ++P  VL V +A  G +A
Sbjct: 456 IEEAARSRSDVVLVDTAGRMQDNEPLMRALSKLIAV------NSPDLVLFVGEALVGNDA 509

Query: 246 LRQVEMFHAVAG-----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGE 293
           + Q+  FH                 G++++K D    + G  + +V     PV F+G G+
Sbjct: 510 VDQLTQFHQKLADLSPVHVEKRLIDGILLSKFDTVDDKVGAALSMVYVSGAPVMFVGCGQ 569

Query: 294 GINDLEPFVAKDFSAVIT 311
              DL+    K     + 
Sbjct: 570 SYTDLKKLNVKSIVNTLL 587


>gi|281202878|gb|EFA77080.1| signal recognition particle receptor alpha subunit [Polysphondylium
           pallidum PN500]
          Length = 669

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 147/307 (47%), Gaps = 33/307 (10%)

Query: 32  ITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
              +  SR +D    + + ++L+  L   ++ + +A+K+V+ +      K +S  + +  
Sbjct: 368 FQTLTGSRTIDNNDLEPILQKLKSHLTSKNVALDIAEKLVDSVGQSLQGKKLSTFQGVNS 427

Query: 88  V-----SELIHKMLMP-----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           V      E + ++L P     + +        RP+ I+  GVNGVGK+T + K+   ++ 
Sbjct: 428 VVKQAMEEAVTRILTPKKTIDILRDVQAVRGTRPYTIVFSGVNGVGKSTNLAKICYWLTA 487

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
            G KVM+AA DTFRS AI+QLK  A+R + +      G DAA++A EA   A+A   DV+
Sbjct: 488 HGYKVMMAACDTFRSGAIEQLKTHAERLNVEVFERGYGKDAASIAGEAIDYARATNHDVV 547

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDT GR+ NN  LM  + K++      + +    VL V +A  G + + Q+  F     
Sbjct: 548 LIDTTGRMQNNEPLMRALSKLV------NQNTIDLVLFVGEALVGNDGVDQLVKFDKSLS 601

Query: 258 ------------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                         G+I+TK D    + G  I +V +   P+ FLG G+   DL+    K
Sbjct: 602 LLADSTQTKVRTIDGIILTKFDTIDDKVGAAISMVYSTGHPIIFLGTGQNYTDLKRMNVK 661

Query: 305 DFSAVIT 311
                + 
Sbjct: 662 VVVKSLL 668


>gi|154346124|ref|XP_001568999.1| signal recognition particle receptor like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134066341|emb|CAM44132.1| putative signal recognition particle receptor like protein
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 601

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 143/314 (45%), Gaps = 33/314 (10%)

Query: 25  SLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
             +L   +   + +R +D    +    +L + LI  ++ V VA+++ + +      K + 
Sbjct: 293 RGRLATWLRSYVGTREVDADDLKHIIPDLREKLIAKNVAVEVAEQVCKSVEVSLAGKRLG 352

Query: 81  VQRVLYDVSE-----LIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               LY   E      + ++L P      L        +H+P+ I++ GVNGVGK+T + 
Sbjct: 353 TFDSLYKTVEDAMTASLRRILQPKREVNLLRDVAVAKAAHKPYSIILCGVNGVGKSTSLA 412

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           K++  +      V+LAAGDTFR  A++QL++              G+D +A+A  A   A
Sbjct: 413 KIAYWLQQNDNSVLLAAGDTFRHGAVEQLEVHGRCLGVPVFQLGYGTDPSAVAAAAIVHA 472

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  DV+IIDTAGR+ ++   M  + K+I        + P  VL V +A  G N + Q+
Sbjct: 473 SKQHTDVVIIDTAGRMQDHESRMRALAKLI------HDNQPDLVLFVGEALVGNNGIDQL 526

Query: 250 EMFHAVA-----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             F+              G  G+++TK D    + G  + +V     P+ F+GVG+   D
Sbjct: 527 RKFNQCLVDFAPVGSRSRGIDGIVLTKFDTIDDKVGAALSMVYELGQPIVFVGVGQTYQD 586

Query: 298 LEPFVAKDFSAVIT 311
           L+    +   + + 
Sbjct: 587 LKVIEPEVVVSALM 600


>gi|289643132|ref|ZP_06475261.1| signal recognition particle-docking protein FtsY [Frankia symbiont
           of Datisca glomerata]
 gi|289507024|gb|EFD27994.1| signal recognition particle-docking protein FtsY [Frankia symbiont
           of Datisca glomerata]
          Length = 369

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 99/273 (36%), Positives = 150/273 (54%), Gaps = 4/273 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +   +V + +   + +L    A +   L  G+  ++S   LD+ V E++E  L+ +D+GV
Sbjct: 98  VPELEVPAPAAGRLVRLRARLARSQSSLGRGLLLLLSGDNLDEEVWEDVETTLLVADVGV 157

Query: 61  AVAQKIVEELLTKRY--AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
              +++V  L TK             +    EL+ ++     +        RP  ILVVG
Sbjct: 158 TPTEELVASLRTKVKVLGARRPADVHVLLRDELLAQIGTSTDRTVQAFAQGRPANILVVG 217

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           VNG GKTT  GK+++ +   G +V+L A DTFR+AA DQL+ W  R  A  V    G D 
Sbjct: 218 VNGTGKTTTCGKIARLLVADGRRVVLGAADTFRAAAADQLETWGSRVGAYTVRGSEGGDP 277

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           A++A+EA K+  +  VD ++IDTAGRLH  + LM  + K+ +V+ +L P     VL VLD
Sbjct: 278 ASVAFEAAKRGISDGVDTVVIDTAGRLHTKTGLMDELSKIKKVVAKLGP--VDEVLLVLD 335

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           ATTGQNA+ Q  +F      TG+++TK+DGT R
Sbjct: 336 ATTGQNAVEQARVFTQAVDITGVVLTKLDGTPR 368


>gi|332018340|gb|EGI58945.1| Signal recognition particle receptor subunit alpha-like protein
           [Acromyrmex echinatior]
          Length = 613

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 53/349 (15%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSD 57
           S+Q+   +S   ++K       TS  +      ++ S+ L       V E+L+D LI  +
Sbjct: 278 SDQEEIEQSKQQVQK------KTS--MFSMFKSLVGSKSLKQEDMLPVLEKLKDHLITKN 329

Query: 58  IGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP------LSKPFNWD 106
           +   +AQK+ + + TK   K     D     V   +++ + ++L P      L       
Sbjct: 330 VAADIAQKLCDSVGTKLEGKILGTFDSVANTVKATLTDALVQILSPKRRIDILRDALEAK 389

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            S+RP+V+   GVNGVGK+T + K+   + +   +V++AA DTFR+ A++QL+      +
Sbjct: 390 NSNRPYVMTFCGVNGVGKSTNLAKICFWLIENNFRVLIAACDTFRAGAVEQLRTHMRHLN 449

Query: 167 -------------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
                                G DAA +A EA + A+  ++DV+++DTAGR+ +N  LM 
Sbjct: 450 ALHPPEKHGNQSMVQLYEKGYGKDAAGIAMEAIRFAKDSRIDVVLVDTAGRMQDNEPLMR 509

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA----------GTTGLIM 263
            + K+I+V      + P  VL V +A  G  A+ Q+  F+                G+++
Sbjct: 510 ALAKLIKV------NEPDLVLFVGEALVGNEAVDQLVKFNQALADYSQSANPHMIDGIVL 563

Query: 264 TKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           TK D    + G  I +      P+ F+G G+   DL+   AK     + 
Sbjct: 564 TKFDTIDDKVGAAITMTYITGQPIVFVGTGQTYTDLKSLNAKAVVHALM 612


>gi|326422495|gb|EGD71892.1| putative signal recognition particle protein SRP54 [Candidatus
           Parvarchaeum acidophilus ARMAN-5_'5-way FS']
          Length = 437

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 83/297 (27%), Positives = 134/297 (45%), Gaps = 20/297 (6%)

Query: 20  GFASTSLKLKEGITDII---SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            F + S +LKE I  ++    + ++ + V +E++  L   D+       ++  +      
Sbjct: 2   AFENLSNRLKESIKKLLNSTGNEKV-EEVLQEIQTALTEGDVDKNTLNNLMSNIRDDIKN 60

Query: 77  KDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                      ++++I+  L+ +  +     +    P  IL+VG+ G GKTT   KL+  
Sbjct: 61  NKGKGLVAKEKIADIIYNNLVKIVGNDETKINIDSVPFKILLVGLFGSGKTTTAAKLANY 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ--AK 192
               G +V+L   DTFR AA  QL+  + + +   +             +A K A    K
Sbjct: 121 YRKRGYRVLLLGLDTFRPAAYQQLEQLSKQINVKIMGGGSD------PIKAIKSAMGSFK 174

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D++I D+AGR   +  L+  I  +   LK      P++V  V+ A  GQNA  QV+ F
Sbjct: 175 NFDIIIADSAGRDILDKELIKEIKGIRDTLK------PNNVTLVIPADLGQNASVQVKGF 228

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           H +     +I+TK DGTA GGG +         V F+G GE IND E F  K F + 
Sbjct: 229 HELLDINNIILTKTDGTANGGGALTAAYISGAKVTFIGTGEKINDFEEFNPKKFVSK 285


>gi|312382726|gb|EFR28083.1| hypothetical protein AND_04404 [Anopheles darlingi]
          Length = 668

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 83/319 (26%), Positives = 143/319 (44%), Gaps = 41/319 (12%)

Query: 28  LKEGITDIISSRRLD-DGV---REELEDLLIRSDIGVAVAQKIVEELLTKRYAK-----D 78
           +      ++ S+ L  D +    ++L D LI  ++   +AQ++ E +  K   +     D
Sbjct: 323 MFSMFRGLVGSKNLSRDDMQPALDKLRDHLIAKNVATDIAQQLCESVAVKLEGRVIGTFD 382

Query: 79  VSVQRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
                V   ++E + ++L P      L        + RP V+   GVNGVGK+T + K+ 
Sbjct: 383 TIAATVKTTLTEALVQILSPKRRIDILRDCLEAKRAGRPFVMSFCGVNGVGKSTNLAKIC 442

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAA 179
             + +  L V++AA DTFR+ A++QL+      +                     G DAA
Sbjct: 443 FWLIENNLSVLIAACDTFRAGAVEQLRTHMRHLNALHPPERHGGRSMVQLYEKGYGKDAA 502

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +A EA + A    +D+++IDTAGR+ +N  LM  + K+I+V      + P  VL V +A
Sbjct: 503 GIAMEAIRHAHDSGIDLVLIDTAGRMQDNEPLMRALAKLIKV------NEPDLVLFVGEA 556

Query: 240 TTGQNALRQVE--MFHAVAG----TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVG 292
             G  A+ Q+     ++         G+++TK D    + G  I +      P+ F+G G
Sbjct: 557 LVGNEAVDQLVNLADYSSRDRPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 616

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +   DL+   AK     + 
Sbjct: 617 QTYTDLKALNAKAVVHALM 635


>gi|54026136|ref|YP_120378.1| putative signal recognition particle [Nocardia farcinica IFM 10152]
 gi|54017644|dbj|BAD59014.1| putative signal recognition particle [Nocardia farcinica IFM 10152]
          Length = 514

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 170/308 (55%), Gaps = 5/308 (1%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
             +   + KL    + +   + + +  ++    LD+   EE+ED L+ +D+G A    +V
Sbjct: 209 EPTAGRLTKLRGRLSRSQNAVGKSLLGLLGGGDLDEDSWEEIEDTLVLADLGTASTTAVV 268

Query: 68  EELLTKRYAKDVSVQRVLYDVSE--LIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGK 124
           E L  +  A+ V        V    L+  +   L +          P ++LVVGVNG GK
Sbjct: 269 ERLREEMAARSVRTPEQARQVLRDVLVEALRPELDRSIRALPHPDHPAILLVVGVNGTGK 328

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT  GKL++ +   G +V+L A DTFR+AA DQL+ W +R  A+ V  + G+D AA+A++
Sbjct: 329 TTTTGKLARVLVADGRRVLLGAADTFRAAAADQLQTWGERVGAETVRGKEGADPAAVAFD 388

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A      + VD ++IDTAGRLH  + LM  +GK+ RV+++    A   VL VLDAT GQN
Sbjct: 389 AVAAGIERGVDAVLIDTAGRLHTKTGLMDELGKVKRVVEKK--AAVDEVLLVLDATVGQN 446

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            L Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +DL PF A 
Sbjct: 447 GLMQARVFAEVVDITGVVLTKLDGTAKGGIVFQVQHELGVPVKLVGLGEGADDLAPFEAG 506

Query: 305 DFSAVITG 312
            F   + G
Sbjct: 507 AFVDALLG 514


>gi|255513329|gb|EET89595.1| GTP-binding signal recognition particle SRP54 G- domain [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 431

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 79/292 (27%), Positives = 133/292 (45%), Gaps = 14/292 (4%)

Query: 26  LKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
             L++ I  I  S  +D        +EL+  L+ +D+ V +  +  + +  +        
Sbjct: 5   EGLRQAIAKISRSTIIDVNTIREFSKELQKTLLMADVEVNLVAEFTKSIQEQALKSKPPP 64

Query: 82  QRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
                + ++ ++++ L  L     ++       IL+ G+ G GKTT   KL+K   D GL
Sbjct: 65  GLDPREYITNMVYEELTKLMGK-TYEPQISKKRILLAGLYGSGKTTTAAKLAKYYQDRGL 123

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
              +   D  R AA  QL+  A + +  F   +   D   +     +  + K   V+I D
Sbjct: 124 SAGVICCDVTRPAAYQQLETLAKQANVAFFGIKDSKDPVKIVKSGLEAMKGKG--VVICD 181

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           T+GR   ++ L+     + RV    D  AP   + V+ A  GQ A RQ   F      +G
Sbjct: 182 TSGRSALDANLVEE---LKRVS---DAFAPEEKVLVVSADIGQVAGRQAREFAKAISISG 235

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +I+TKMDG+A+GGG +        PV F+G GE I+++EPF ++ F   + G
Sbjct: 236 VIVTKMDGSAKGGGALSAANAAHAPVMFIGTGEKISNIEPFDSEKFIGELLG 287


>gi|326933220|ref|XP_003212705.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           [Meleagris gallopavo]
          Length = 661

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 146/318 (45%), Gaps = 45/318 (14%)

Query: 33  TDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YD 87
             ++ S+ L     D V E+++D LI  ++   +A ++ E +  K   K +     +   
Sbjct: 348 KGLVGSKSLTRQDMDPVLEKMKDHLIAKNVAAEIAVQLCESVAKKLEGKVMGTFTTVTST 407

Query: 88  VSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           V + + + L+ + +P           +     RP+V+   GVNGVGK+T + K+S  + +
Sbjct: 408 VKQALQEALVQILQPQRRVDVLRDVMDAQRHRRPYVVTFCGVNGVGKSTNLAKISFWLIE 467

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAAALAYE 184
            G  V++AA DTFR+ A++QL+    R +                     G DAA +A E
Sbjct: 468 NGFSVLIAACDTFRAGAVEQLRTHTRRLNALHPPESHGGRSMVQLYEKGYGKDAAGIAME 527

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      +AP  VL V +A  G  
Sbjct: 528 AISYARNQGFDVVLVDTAGRMQDNAPLMTALAKLIAV------NAPDLVLFVGEALVGNE 581

Query: 245 ALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGE 293
           A+ Q+  F+                G+++TK D    + G  I +      P+ F+G G+
Sbjct: 582 AVDQLVKFNKALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQ 641

Query: 294 GINDLEPFVAKDFSAVIT 311
              DL    AK   A + 
Sbjct: 642 TYCDLRSLNAKAVVAALM 659


>gi|170038031|ref|XP_001846857.1| signal recognition particle receptor subunit alpha [Culex
           quinquefasciatus]
 gi|167881443|gb|EDS44826.1| signal recognition particle receptor subunit alpha [Culex
           quinquefasciatus]
          Length = 625

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 145/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD-DGV---REELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           A  S  +      ++ S+ L  + +    ++L+D LI  ++   ++ K+ E +  K   K
Sbjct: 302 AKKSGGMFSLFKGLVGSKNLSREDMQPALDKLKDHLISKNVATDISHKLCESVAVKLEGK 361

Query: 78  -----DVSVQRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
                D     V   ++E + ++L P      L        + RP+V+   GVNGVGK+T
Sbjct: 362 VLGTFDTIAATVKNTLTEALVQILSPKRRVDILRDCMEAKKNKRPYVMSFCGVNGVGKST 421

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+   + +    V++AA DTFR+ A++QL+      +                    
Sbjct: 422 NLAKICFWLIENNFNVLIAACDTFRAGAVEQLRTHMRHLNALHPPEKHGGRSMVQLYEKG 481

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA + A    VD+++IDTAGR+ +N  LM  + K+I+V      + P  V
Sbjct: 482 YGKDAAGIAMEAIRHANDTGVDIVLIDTAGRMQDNEPLMRALAKLIKV------NEPDLV 535

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 536 LFVGEALVGNEAVDQLVKFNQALADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYIT 595

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL+   AK     + 
Sbjct: 596 GQPIVFVGTGQTYTDLKKLNAKAVVHALM 624


>gi|255082426|ref|XP_002504199.1| type II secretory pathway family [Micromonas sp. RCC299]
 gi|226519467|gb|ACO65457.1| type II secretory pathway family [Micromonas sp. RCC299]
          Length = 650

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 144/307 (46%), Gaps = 33/307 (10%)

Query: 32  ITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEE----LLTKRYAKDVSVQR 83
           +  ++    LDD     V E+L+   +  ++   +A+++ E     L  ++ A   S+  
Sbjct: 347 VQGVVGKSALDDEDLEPVLEKLKTNFMNKNVAEDIAERLCESVAASLRGRKLASFSSLSA 406

Query: 84  VLYDVSEL-IHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           ++    E  + ++L P      L +      + RP+ I+ VGVNGVGK+T + K++  + 
Sbjct: 407 MVRTAMEEALTRILTPKRSVDILREVRAAKDAGRPYTIVFVGVNGVGKSTNLSKVAYWLL 466

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
              +KVM+AA DTFR+ A++QL+    R            D A +A EA K AQ +  D 
Sbjct: 467 QHDVKVMIAACDTFRAGAVEQLRTHCKRLGVPLFERGYEKDPANVASEAIKAAQRQGCDA 526

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +++DTAGR+ +N  LM  + K+I +      + P   L V +A  G +A+ Q+  F+   
Sbjct: 527 VLVDTAGRMQDNEPLMRALSKLINM------NDPDLTLFVGEALVGNDAVDQLSKFNERL 580

Query: 257 G-----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
                         G++++K D    + G  + +V T   PV F+G G+   DL     K
Sbjct: 581 ADLNANARRTKLIDGIVLSKFDTIDDKVGAALSMVYTSGAPVVFVGCGQTYTDLRRLNVK 640

Query: 305 DFSAVIT 311
               ++ 
Sbjct: 641 SVVKILL 647


>gi|324507951|gb|ADY43362.1| Signal recognition particle receptor subunit alpha [Ascaris suum]
          Length = 657

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 88/323 (27%), Positives = 145/323 (44%), Gaps = 39/323 (12%)

Query: 22  ASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             +          ++ +++L       V +++ D LI  ++    A K+ + +  K   K
Sbjct: 340 TKSGGGWFSAFKSLVGNKKLTAEDIQPVLDKMRDTLIAKNVAAEPADKLCQSVAAKLEGK 399

Query: 78  DV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            V S  RV   V E I + L+ L  P                HRP+VI+  GVNGVGK+T
Sbjct: 400 VVGSFSRVAGIVKESIREALVQLLTPKRRVDILRDVLEAKREHRPYVIVFCGVNGVGKST 459

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------ADFVCSEIGSDAAA 180
            + K++  +++ G +V++AAGDTFR+ A++QL+      +              G D A 
Sbjct: 460 NLAKITFWLNENGHRVLIAAGDTFRAGAVEQLRTHTKHLNSLHPNSVQLYEQGYGKDPAG 519

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           LA  A   A  + +DV+++DTAGR+ +N  LM  + K+IR+      + P  VL V +A 
Sbjct: 520 LAAAAIAIASERNIDVVLVDTAGRMQDNEPLMRSLAKLIRI------NEPDLVLFVGEAL 573

Query: 241 TGQNAL------RQVEMFHAVAG-----TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYF 288
            G +A+       Q    HA  G       G+++TK D    + G  I +      P+ F
Sbjct: 574 VGNDAVDQLVKFNQALADHAALGADARLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVF 633

Query: 289 LGVGEGINDLEPFVAKDFSAVIT 311
           +G G+   DL+          + 
Sbjct: 634 VGTGQTYKDLKNLNISAVVHSLL 656


>gi|74024974|ref|XP_829053.1| signal recognition particle receptor subunit alpha [Trypanosoma
           brucei]
 gi|70834439|gb|EAN79941.1| signal recognition particle receptor alpha subunit, putative
           [Trypanosoma brucei]
          Length = 582

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 152/344 (44%), Gaps = 43/344 (12%)

Query: 5   KVASESLSWIRKLTKG-FASTSLKLKEG---------ITDIISSRRLD----DGVREELE 50
           + A +  ++I++L  G  A    K  EG         +   +  R LD    + V   L 
Sbjct: 244 QTALQRAAFIKRLPNGSVAPVREKEWEGQQRGLLANWLRSYVGRRELDSQDFNNVIPGLR 303

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMP------L 99
           + LI  ++ V VA+ + + +      K +     L+   E      + ++L P      L
Sbjct: 304 EKLITKNVAVEVAEHVCKSVEASLTGKVLGTFESLHQCIEAAMISALRRILQPKHEINIL 363

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
               +    ++P+ I++ GVNGVGK+T + K++  +   G  VM+AAGDTFR  A++QL+
Sbjct: 364 RAVASSRGRNKPYSIVLCGVNGVGKSTTLAKITYWLQQNGHTVMIAAGDTFRHGAVEQLE 423

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +       D      G+D +A+A  A  +A     DV++IDTAGR+ ++   M  + K+I
Sbjct: 424 VHGRCLGVDVFQMGYGTDPSAVAAAAISRATRDGCDVVMIDTAGRMQDHESRMRALAKLI 483

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA-----------GTTGLIMTKMDG 268
                   + P  VL V +A  G   + Q+  F+              G  G+++TK D 
Sbjct: 484 ------HDNQPDLVLFVGEALVGNTGVDQLRRFNQCLVDFVPVGSVPRGIDGIVLTKFDT 537

Query: 269 -TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              + G  + +V     P+ F+G G+   DL+        + + 
Sbjct: 538 IDDKVGAAVSMVYELGQPIVFVGAGQTYQDLKVMEPDVVVSALM 581


>gi|261334999|emb|CBH17993.1| signal recognition particle receptor alpha subunit, putative
           [Trypanosoma brucei gambiense DAL972]
          Length = 582

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 152/344 (44%), Gaps = 43/344 (12%)

Query: 5   KVASESLSWIRKLTKG-FASTSLKLKEG---------ITDIISSRRLD----DGVREELE 50
           + A +  ++I++L  G  A    K  EG         +   +  R LD    + V   L 
Sbjct: 244 QTALQRAAFIKRLPNGSVAPVREKEWEGQQRGLLANWLRSYVGRRELDSQDFNNVIPGLR 303

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMP------L 99
           + LI  ++ V VA+ + + +      K +     L+   E      + ++L P      L
Sbjct: 304 EKLITKNVAVEVAEHVCKSVEASLTGKVLGTFESLHQCIEAAMISALRRILQPKHEINIL 363

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
               +    ++P+ I++ GVNGVGK+T + K++  +   G  VM+AAGDTFR  A++QL+
Sbjct: 364 RAVASSRGRNKPYSIVLCGVNGVGKSTTLAKITYWLQQNGHTVMIAAGDTFRHGAVEQLE 423

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +       D      G+D +A+A  A  +A     DV++IDTAGR+ ++   M  + K+I
Sbjct: 424 VHGRCLGVDVFQMGYGTDPSAVAAAAISRATRDGCDVVMIDTAGRMQDHESRMRALAKLI 483

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA-----------GTTGLIMTKMDG 268
                   + P  VL V +A  G   + Q+  F+              G  G+++TK D 
Sbjct: 484 ------HDNQPDLVLFVGEALVGNTGVDQLRRFNQCLVDFVPVGSVPRGIDGIVLTKFDT 537

Query: 269 -TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              + G  + +V     P+ F+G G+   DL+        + + 
Sbjct: 538 IDDKVGAAVSMVYELGQPIVFVGAGQTYQDLKVMEPDVVVSALM 581


>gi|193662214|ref|XP_001947029.1| PREDICTED: signal recognition particle receptor subunit alpha
           homolog [Acyrthosiphon pisum]
          Length = 627

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 81/327 (24%), Positives = 147/327 (44%), Gaps = 45/327 (13%)

Query: 24  TSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           +   +      ++  + L     D V E+L++ L+  ++ + +A K+ + + +K   K +
Sbjct: 306 SKKSVFSMFKGLVGRKNLTATDMDPVLEKLKEHLVAKNVAIEIATKLCDSVSSKLEGKVL 365

Query: 80  SVQRVLY-----DVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                +       + E + ++L P      L        + +P+V+   GVNGVGK+T +
Sbjct: 366 GSFESVASTVKNTMIESLVQILSPKRRIDILRDAMMAKKNEKPYVMAFCGVNGVGKSTNL 425

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIG 175
            K+   + +  L+V++AA DTFR+ A++QL+      +                     G
Sbjct: 426 AKICFWLIENNLRVLIAACDTFRAGAVEQLRTHTKHLNALHPAKKHNDQQMVQLYEKGYG 485

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            DAA +A EA   A+  K D++++DTAGR+ +N  LM  + K+I+V      + P  VL 
Sbjct: 486 KDAAGIAMEAINHAKEAKYDIVLVDTAGRMQDNEPLMRALTKLIKV------NEPDMVLF 539

Query: 236 VLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKI 284
           V +A  G  A+ Q+  F+                G+++TK D    + G  I +      
Sbjct: 540 VGEALVGNEAVDQLVKFNQALADYSSSVTPHLIDGIVLTKFDTIDDKVGAAISMTYITGQ 599

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVIT 311
           P+ F+G G+   DL+   AK   A + 
Sbjct: 600 PIVFVGTGQTYTDLKSLNAKAVVAALM 626


>gi|51598337|ref|YP_072525.1| signal recognition particle-docking protein FtsY [Borrelia garinii
           PBi]
 gi|51572908|gb|AAU06933.1| signal recognition particle-docking protein FtsY [Borrelia garinii
           PBi]
          Length = 281

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 166/286 (58%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + E I ++  S++  + + E LED+L+ SDI   +  +I+ +L  ++   + ++   +  
Sbjct: 3   ILEKIKNLFKSKQ-QENIIENLEDILLESDINNEIVIEIINKLTKEKNKNEKTI---IEK 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + EL+   +    K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A 
Sbjct: 59  LKELLSNYINI--KKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAA 115

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+Q+K++ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N
Sbjct: 116 DTFRAAAIEQMKVYGEQIGIRIISQNQGSDPSAVIFDSISSAKIKNYDALIIDTAGRLQN 175

Query: 208 NSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + K+  V+ +   + +  +  + V+D+T G+N   Q E+F+      G+I+TK
Sbjct: 176 KENLIKELQKINNVILKQIKNTNINYQKILVIDSTIGKNTNSQAEIFNKAIEIDGIIITK 235

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +D ++R G +I I    + P+YF   GE + D++ F   ++   + 
Sbjct: 236 LDSSSRAGVIINISKILEKPIYFTTFGETLEDIKEFDINEYLNKLL 281


>gi|302767828|ref|XP_002967334.1| hypothetical protein SELMODRAFT_439853 [Selaginella moellendorffii]
 gi|300165325|gb|EFJ31933.1| hypothetical protein SELMODRAFT_439853 [Selaginella moellendorffii]
          Length = 609

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 135/310 (43%), Gaps = 32/310 (10%)

Query: 28  LKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQ 82
                  +     L+        + L+D L+  ++   +A+KI E +      K + +  
Sbjct: 305 FSSVFQSVTGKAALEKADLVPAMKALKDRLMTKNVAEEIAEKICESVAASLLGKKLGTFT 364

Query: 83  RVLYDVSELIHKMLMPLSKPFN----------WDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           RV   V E +   L+ +  P                 RP+VI+ VGVNGVGK+T + K++
Sbjct: 365 RVSSAVKEAMGDALLRILTPKRSIDILRDVKSAKDEGRPYVIVFVGVNGVGKSTSLAKVA 424

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             +    L V++AA DTFRS A++QL+  A R            D A +A EA   A   
Sbjct: 425 YWLKSHELSVLIAACDTFRSGAVEQLRTHAKRLQTTLYEKGYEKDPANVAREAIATAAKT 484

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K DV+++DTAGR+ +N  LM  +  +I V K      P  VL V +A  G  A+ Q+  F
Sbjct: 485 KHDVVLVDTAGRMQDNEPLMRALANLINVNK------PDLVLFVGEALVGNEAVDQLSKF 538

Query: 253 HAVA----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           +                G+++TK D    + G  + +V     P+ FLG G+  +DL   
Sbjct: 539 NQTLADLSATAKRKPIDGILLTKFDTIDDKVGAALSMVYVSGAPIMFLGCGQSYHDLRRL 598

Query: 302 VAKDFSAVIT 311
             K     + 
Sbjct: 599 NVKSIIKTLL 608


>gi|218754674|ref|ZP_03533470.1| cell division protein ftsY [Mycobacterium tuberculosis GM 1503]
 gi|289763097|ref|ZP_06522475.1| signal recognition particle FtsY [Mycobacterium tuberculosis GM
           1503]
 gi|289710603|gb|EFD74619.1| signal recognition particle FtsY [Mycobacterium tuberculosis GM
           1503]
          Length = 395

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 99/280 (35%), Positives = 151/280 (53%), Gaps = 5/280 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
                + +L    A +   L  G+  +I    LD+   +++ED L+ +D+G A    +V 
Sbjct: 118 PPEGRLERLRGRLARSQNALGRGLLGLIGGGDLDEDSWQDVEDTLLVADLGPAATASVVS 177

Query: 69  ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGKT 125
           +L ++  + +V  +     V  +++   L P           +  P V+LVVGVNG GKT
Sbjct: 178 QLRSRLASGNVRTEADARAVLRDVLINELQPGMDRSIRALPHAGHPSVLLVVGVNGTGKT 237

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A  V    G+D A++A++A
Sbjct: 238 TTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAARVGAAVVRGPEGADPASVAFDA 297

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             +  A   DV++IDTAGRLH    LM  + K+ RV+ R        VL VLDAT GQN 
Sbjct: 298 VDKGIAAGADVVLIDTAGRLHTKVGLMDELDKVKRVVTRRAS--VDEVLLVLDATIGQNG 355

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           L Q  +F  V   +G ++TK+DGTA+GG +  +     +P
Sbjct: 356 LAQARVFAEVVDISGAVLTKLDGTAKGGIVFRVQQELGVP 395


>gi|219123108|ref|XP_002181873.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406474|gb|EEC46413.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 308

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 133/301 (44%), Gaps = 31/301 (10%)

Query: 36  ISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV------------ 79
             ++ L D   ++    +E LL   ++   VA ++   +  K   K +            
Sbjct: 12  TGNKTLSDADLDQPLKSMEQLLTSKNVAREVAHELCLGIRGKLEGKKLNSLYRVQTAVRQ 71

Query: 80  ----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKK 134
               ++ ++L    +L+   +        +  S R P+VI VVG+NGVGK+T + KL+  
Sbjct: 72  ALESTLTKMLKMHVDLLRNTMSKRGDNSLFKMSKRAPYVIAVVGINGVGKSTSLAKLAYY 131

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G   +L AGDTFRS A++QLK+ A              D + +A  A + A  +  
Sbjct: 132 FKQNGCSPLLVAGDTFRSGAVEQLKVHASCLDIPMYSQGYSKDPSIVAKAAIQHATEENH 191

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV++IDTAGR+ NN  LM  +GK++        + P  V+ V +A  G + L Q  MF  
Sbjct: 192 DVVLIDTAGRMQNNVPLMKALGKLVT------ENKPDFVILVCEALVGHDGLSQFTMFKQ 245

Query: 255 VA---GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
                G  GLI+TK D  + + G  + +      P+ F G G+  + L+          +
Sbjct: 246 ALGIRGIDGLILTKFDTVSDKVGAALTLTHQTGAPIIFCGTGQKYHHLKKLSVTSVIQSL 305

Query: 311 T 311
            
Sbjct: 306 F 306


>gi|115386444|ref|XP_001209763.1| hypothetical protein ATEG_07077 [Aspergillus terreus NIH2624]
 gi|114190761|gb|EAU32461.1| hypothetical protein ATEG_07077 [Aspergillus terreus NIH2624]
          Length = 645

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 155/333 (46%), Gaps = 49/333 (14%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDI 58
           N+K  + S  ++     GF      +   + +I+  + L +   E+    +ED L++ ++
Sbjct: 313 NEKAKASSSGFVG---SGF----NAIGGLLRNIVGGKVLTEADLEKPLKTMEDHLLKKNV 365

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMP------------LSK 101
               A ++ + +  +   K  +  + +    +L     + K+L P            +S 
Sbjct: 366 AREAAVRLCDGVKRELVGKKTANFQSVDAALQLAMESALRKILTPTSSLDLLREIDAVSS 425

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           P     S RP+VI +VGVNGVGK+T +GK+   +     +V++AA DTFRS A++QL++ 
Sbjct: 426 PTTKQQSPRPYVISIVGVNGVGKSTNLGKICYFLLQNNYRVLIAACDTFRSGAVEQLRVH 485

Query: 162 ADRTS----------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           A               +      G DAA +A +A +   A K DV++IDTAGR HN+  L
Sbjct: 486 ARNLKELSARENVGEVELYEKGYGKDAANVAKDAVEYGAANKFDVVLIDTAGRRHNDQRL 545

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMD 267
           M+ + K  +  K      P  +  V +A  G +++ Q   F+   G      G I++K D
Sbjct: 546 MSSLEKFAKFAK------PDKIFMVGEALVGTDSVMQARNFNQAFGTGRNLDGFIISKCD 599

Query: 268 GTARG-GGLIPIVVTHKIPVYFLGVGEGINDLE 299
                 G L+ +V    IP+ FLGVG+   DL 
Sbjct: 600 TVGDMVGTLVSMVHATGIPIVFLGVGQHYGDLR 632


>gi|67473872|ref|XP_652685.1| Signal recognition particle receptor alpha subunit [Entamoeba
           histolytica HM-1:IMSS]
 gi|56469558|gb|EAL47298.1| Signal recognition particle receptor alpha subunit, putative
           [Entamoeba histolytica HM-1:IMSS]
          Length = 488

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 84/332 (25%), Positives = 148/332 (44%), Gaps = 37/332 (11%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M  Q+    + S + K+  GF  T +        I  +  ++    E++E +LI  ++  
Sbjct: 172 MKKQEKPKSNGSTLSKIFAGFNGTRI--------IDEAESIEQA--EKIEKMLIEKNVNS 221

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF----------NWDFSHR 110
            +A +I   + T    K V    +   V + + ++L  +  P               +  
Sbjct: 222 EIAAQIKNNIQTLLNGKKVDTFTLSGTVIQGVTEVLTRIMTPTSPIDVAKEISEKKANGE 281

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            + ++ +GVNGVGK+T + K++  ++    KVM+AA DTFR+ A+DQL + A +      
Sbjct: 282 VYTMVFLGVNGVGKSTSLSKMACWLTSLNYKVMIAACDTFRAGAVDQLAVHAQKLGITLY 341

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                +D +A+A  A K+A+    DVL++DTAGR+  N  L      M  + K +     
Sbjct: 342 EKGYDTDPSAIARNALKRAKEDGYDVLLVDTAGRMQGNDAL------MKAIAKLVHSAQT 395

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVA----------GTTGLIMTKMDG-TARGGGLIPIV 279
             VL V +A  G +A+ Q+  F+             G  G+I+TK D    + G  I + 
Sbjct: 396 DLVLFVAEALVGNDAVNQLTTFNRYIIDYAPNKQSKGVNGIILTKFDTIDDKVGAAISLT 455

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
               IP+ F+G G+   DL+     +  + + 
Sbjct: 456 YCTGIPILFVGSGQHYTDLKLLDIDELISTLL 487


>gi|307108633|gb|EFN56873.1| hypothetical protein CHLNCDRAFT_21935 [Chlorella variabilis]
          Length = 629

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 85/317 (26%), Positives = 148/317 (46%), Gaps = 31/317 (9%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             G  S+ ++   G+   ++   ++  +   L+  L+  ++   +A K+ E + T    +
Sbjct: 320 KGGLLSSFVR-TIGVNVALTRTDIEPALA-TLKKKLMERNVAEEIADKVTESVATSLEGR 377

Query: 78  DVSVQRVL-----YDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            ++    +       V E + ++L P      L +        +P+ I+ VGVNGVGK+T
Sbjct: 378 KLASFTRVSTAVQQAVEEALTRILTPKRSIDVLREVKAVQAKGQPYTIVFVGVNGVGKST 437

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            + K++  +   G+KVM+AA DTFRS A++QLK    R            D A +A+EA 
Sbjct: 438 NLAKVAYWLLQNGVKVMIAACDTFRSGAVEQLKTHCARLQVPLYERGYEKDPAKVAFEAA 497

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K AQ   +DVL++DTAGR+ +N  LM  +  +I +      + P  VL V +A  G +A+
Sbjct: 498 KAAQRSGIDVLLVDTAGRMQDNEPLMRALSNLINL------NQPDLVLFVGEALVGNDAV 551

Query: 247 RQVEMFHAVAG-----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEG 294
            Q+  F+                 G+++TK D    + G  + +V T   P+ F+G G+ 
Sbjct: 552 DQLTKFNQRLADLCPDPTQRHLIDGIVLTKFDTIDDKVGAALSMVYTSGAPIMFVGCGQT 611

Query: 295 INDLEPFVAKDFSAVIT 311
             DL+    K     + 
Sbjct: 612 YVDLKKLHVKSVVKSLL 628


>gi|224534870|ref|ZP_03675439.1| signal recognition particle-docking protein FtsY [Borrelia
           spielmanii A14S]
 gi|224513810|gb|EEF84135.1| signal recognition particle-docking protein FtsY [Borrelia
           spielmanii A14S]
          Length = 281

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 85/286 (29%), Positives = 165/286 (57%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + E I ++  S+   + + E LED+L+ SDI   +  +I+ +L  ++   + ++   +  
Sbjct: 3   IFEKIKNLFKSKE-QENILENLEDILLESDINNEIVIEIINKLTKEKNKTEKTI---IEK 58

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + EL+   +   +K F  + +++ +++L+VG+NG+GKT+ I KL+ K+ + G  ++++A 
Sbjct: 59  LKELLSDYIN--TKKFTLE-NNKLNILLIVGINGIGKTSSIAKLANKLKNEGKNILISAA 115

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+Q+KI+ ++     +    GSD +A+ +++   A+ K  D LIIDTAGRL N
Sbjct: 116 DTFRAAAIEQMKIYGEQIGVKIISQNQGSDPSAVIFDSISSAKLKNYDALIIDTAGRLQN 175

Query: 208 NSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + K+  V+ +   + +  +  + V+D+T G+N   Q E+F+      G+I+TK
Sbjct: 176 KENLIKELQKINNVILKQVKNTNINYQKILVIDSTIGKNTNSQAEIFNKSIEIDGIIITK 235

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +D ++R G +I I    + P+YF   GE + D++ F   +    + 
Sbjct: 236 LDSSSRAGTIINISKILEKPIYFTTFGEKLEDIKEFDINECLNKLL 281


>gi|157169464|ref|XP_001651530.1| signal recognition particle receptor alpha subunit (sr-alpha)
           [Aedes aegypti]
 gi|108878422|gb|EAT42647.1| signal recognition particle receptor alpha subunit (sr-alpha)
           [Aedes aegypti]
          Length = 623

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 86/328 (26%), Positives = 145/328 (44%), Gaps = 45/328 (13%)

Query: 23  STSLKLKEGITDIISSRRLD-DGV---REELEDLLIRSDIGVAVAQKIVEELLTKRYAK- 77
             S  +      ++ S+ L  + +    ++L D LI  ++   ++ K+ E +  K   K 
Sbjct: 301 KKSGGVFSLFKGLVGSKNLTREDMQPALDKLRDHLISKNVASDISHKLCESVAVKLEGKV 360

Query: 78  ----DVSVQRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
               D     V   ++E + ++L P      L        + RP+V+   GVNGVGK+T 
Sbjct: 361 LGTFDTIATTVKNTLTEALVQILSPKRRVDILRDCLEAKKNKRPYVMSFCGVNGVGKSTN 420

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEI 174
           + K+   + +  L V++AA DTFR+ A++QL+      +                     
Sbjct: 421 LAKICFWLIENNLNVLIAACDTFRAGAVEQLRTHMRHLNALHPPEKHSGRNMVQLYEKGY 480

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A EA + A+   VDV++IDTAGR+ +N  LM  + K+I+V      + P  VL
Sbjct: 481 GKDAAGIAMEAIRHAKDSAVDVVLIDTAGRMQDNEPLMRALAKLIKV------NEPDLVL 534

Query: 235 QVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHK 283
            V +A  G  A+ Q+  F+                G+++TK D    + G  I +     
Sbjct: 535 FVGEALVGNEAVDQLVKFNQALADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYITG 594

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            P+ F+G G+   DL+   AK     + 
Sbjct: 595 QPIVFVGTGQTYTDLKKLNAKAVVHALM 622


>gi|298710297|emb|CBJ31918.1| PFtsY, plastid signal recognition particle receptor [Ectocarpus
           siliculosus]
          Length = 522

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 101/316 (31%), Positives = 167/316 (52%), Gaps = 20/316 (6%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
            K + G A + L+    + ++       +   E+LE+ L+++D+G   + +I+E+L    
Sbjct: 139 AKFSDGLAQSRLRFVGDLENLFGMAGPLEETLEKLEEALLQADLGATTSFQIIEDLRNTA 198

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----------------PHVILVVG 118
            A+D  ++    D+  ++   L+ +        +                  P V+  +G
Sbjct: 199 KAEDRRLEPD--DIKSVLRATLIQVLNGGTMPSAEGGGDTAAITFADPSLGVPSVLFFMG 256

Query: 119 VNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD-FVCSEIGS 176
            NG+GKTT +GK++ ++  D G KV+LAA DTFR+AA++QL  WA+R+ AD  V  +   
Sbjct: 257 ANGMGKTTTVGKVASRLREDGGQKVLLAAADTFRAAAVEQLNEWAERSGADIVVPLDKDE 316

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
              ++   A ++A ++  DVLI+DT+GRL NN  L   +  M + L    P APH  L V
Sbjct: 317 RPPSVVARAAEKAVSEGYDVLIVDTSGRLSNNYSLNEELKDMKKALSDRIPGAPHDTLLV 376

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DA+ G+NA+ Q   +    G + L++TK+DGTARGG ++ IV    +PV  +GVGE + 
Sbjct: 377 VDASVGRNAVDQARTWKQEVGISALVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGESLY 436

Query: 297 DLEPFVAKDFSAVITG 312
           DL  F    F   + G
Sbjct: 437 DLRDFEPVLFVDSLLG 452


>gi|322829127|gb|EFZ32662.1| signal recognition particle receptor like protein, putative
           [Trypanosoma cruzi]
          Length = 576

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 151/344 (43%), Gaps = 43/344 (12%)

Query: 5   KVASESLSWIRKLTKG-----FAST-----SLKLKEGITDIISSRRLDDGVRE----ELE 50
           +  ++  S+I++L  G                +L   +   +  R LD    +     L 
Sbjct: 238 QAEAQRASFIKRLPNGNVAPVREKEWENQPRGRLANWLRLYVGRRELDSQDFQRVIPSLR 297

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMP------L 99
           + LI  ++ V VA+ + + + T      +       Q +   ++  +H++L P      L
Sbjct: 298 EKLIAKNVAVEVAEHVCKSVETSLEGMKLGTFDSLHQCIEKAMTSALHRILQPKHEVNIL 357

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
               +     +P+ I++ GVNGVGK+T + K++  +      +M+AAGDTFR  A++QL+
Sbjct: 358 RAVASAQSRKKPYSIVLCGVNGVGKSTTLAKIAYWLQQNDHSIMIAAGDTFRHGAVEQLE 417

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +              G+D +A+A  A  QA  ++ DV++IDTAGR+ ++   M  + K+I
Sbjct: 418 VHGRCLGVPVFQMGYGTDPSAVAAAAIAQATRQQYDVVMIDTAGRMQDHESRMRALAKLI 477

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA-----------GTTGLIMTKMDG 268
                   + P  VL V +A  G + + Q+  F+              G  G+++TK D 
Sbjct: 478 ------HDNQPDLVLFVGEALVGNSGVDQLRRFNQCLVDFSPVGTVPRGIDGIVLTKFDT 531

Query: 269 -TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              + G  + +V     P+ F+G G+   DL+        + + 
Sbjct: 532 IDDKVGAALSMVYELGQPIVFVGSGQTYQDLKVMQPDVVVSALM 575


>gi|146103857|ref|XP_001469660.1| signal recognition particle receptor like protein [Leishmania
           infantum]
 gi|134074030|emb|CAM72771.1| putative signal recognition particle receptor like protein
           [Leishmania infantum JPCM5]
          Length = 605

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 82/315 (26%), Positives = 148/315 (46%), Gaps = 33/315 (10%)

Query: 24  TSLKLKEGITDIISSRRLD-DGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           +  +L   +   + +R +D + +++   +L + LI  ++ V VA+ + + +      K +
Sbjct: 296 SRGRLATWLRSYVGTREVDAEDLKKIIPDLREKLIAKNVAVEVAEHVCKSVEASLAGKRL 355

Query: 80  SVQRVLYDVSE-----LIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                LY   E      + ++L P      L        + +P+ I++ GVNGVGK+T +
Sbjct: 356 GTFDSLYKTVEDAMMASLRRILQPKCEVNLLRDVAAAKAAGKPYSIVLCGVNGVGKSTSL 415

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            K++  +   G  V+LAAGDTFR  A++QL +      A       G+D +A+A  A  Q
Sbjct: 416 AKITYWLQQNGNSVLLAAGDTFRHGAVEQLGVHGRCLGAPVFQLGYGTDPSAVAAAAMAQ 475

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A  + +DV++IDTAGR+ ++   M  + K+I        + P  VL V +A  G N + Q
Sbjct: 476 ASKQHIDVVMIDTAGRMQDHESRMRALAKLI------HDNQPDLVLFVGEALVGNNGIDQ 529

Query: 249 VEMFHAVA-----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +  F+              G  G+++TK D    + G  + +V     P+ F+GVG+   
Sbjct: 530 LRKFNQCLVDFAPVGSRSRGIDGIVLTKFDTIDDKVGAALSMVYELGQPIVFVGVGQTYQ 589

Query: 297 DLEPFVAKDFSAVIT 311
           DL+    +   + + 
Sbjct: 590 DLKVIEPEVVVSALM 604


>gi|71652778|ref|XP_815039.1| signal recognition particle receptor like protein [Trypanosoma
           cruzi strain CL Brener]
 gi|70880063|gb|EAN93188.1| signal recognition particle receptor like protein, putative
           [Trypanosoma cruzi]
          Length = 574

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 151/344 (43%), Gaps = 43/344 (12%)

Query: 5   KVASESLSWIRKLTKG-----FAST-----SLKLKEGITDIISSRRLDDGVREE----LE 50
           +  ++  S+I++L  G                +L   +   +  R LD    +     L 
Sbjct: 236 QAEAQRASFIKRLPNGNVAPVREKEWENQPRGRLANWLRLYVGRRELDSQDFQRVIPCLR 295

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMP------L 99
           + LI  ++ V VA+ + + + T      +       Q +   ++  +H++L P      L
Sbjct: 296 EKLIAKNVAVEVAEHVCKSVETSLEGMKLGTFDSLHQCIEKAMTSALHRILQPKHEVNIL 355

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
               +     +P+ I++ GVNGVGK+T + K++  +      +M+AAGDTFR  A++QL+
Sbjct: 356 RAVASAQSRKKPYSIVLCGVNGVGKSTTLAKIAYWLQQNDHSIMIAAGDTFRHGAVEQLE 415

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +              G+D +A+A  A  QA  ++ DV++IDTAGR+ ++   M  + K+I
Sbjct: 416 VHGRCLGVPVFQMGYGTDPSAVAAAAIAQATRQQYDVVMIDTAGRMQDHESRMRALAKLI 475

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA-----------GTTGLIMTKMDG 268
                   + P  VL V +A  G + + Q+  F+              G  G+++TK D 
Sbjct: 476 ------HDNQPDLVLFVGEALVGNSGVDQLRRFNQCLVDFSPVGTVPRGIDGIVLTKFDT 529

Query: 269 -TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              + G  + +V     P+ F+G G+   DL+        + + 
Sbjct: 530 IDDKVGAALSMVYELGQPIVFVGSGQTYQDLKVMQPDVVVSALM 573


>gi|163839816|ref|YP_001624221.1| signal recognition particle receptor [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953292|gb|ABY22807.1| signal recognition particle receptor [Renibacterium salmoninarum
           ATCC 33209]
          Length = 395

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 184/311 (59%), Gaps = 6/311 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +        +++L    + ++  L +G+  ++SS ++D+GV EELE+ L+ +DIG   + 
Sbjct: 86  ETPEPPAGRLQRLRARLSKSNNALGKGLLALLSSDKIDEGVWEELEETLLLADIGTQPSL 145

Query: 65  KIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMP-LSKPFNWDFSHR-PHVILVVGVNG 121
           ++VE L  +       S Q V   + E + K++ P + +          P ++LVVGVNG
Sbjct: 146 ELVEILRERVKIMGSRSPQEVQAMLREELIKLVDPGMDRSLAVSRQGELPAIVLVVGVNG 205

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS-DAAA 180
           VGKTT +GKL++ +      V+L A DTFR+AA +QL  W  R     V S++   D A+
Sbjct: 206 VGKTTTVGKLARVLVAEDKDVLLGAADTFRAAAAEQLATWGARVGVPTVKSDVDGADPAS 265

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A+EA K    ++VDV++IDTAGRL N   LM  +GK+ RV+++L       VL VLDAT
Sbjct: 266 VAFEAVKSGIEQEVDVVMIDTAGRLQNKVGLMDELGKVKRVIEKLANVG--EVLLVLDAT 323

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQN L Q ++F  V   TG+++TK+DGTA+GG ++ I  +  +PV  +G+GEG +DL P
Sbjct: 324 TGQNGLTQAKVFSEVVDITGIVLTKLDGTAKGGIVVAIQKSLGVPVKLVGLGEGADDLAP 383

Query: 301 FVAKDFSAVIT 311
           F A+ F   I 
Sbjct: 384 FDAEQFVDAIL 394


>gi|322490946|emb|CBZ26210.1| putative signal recognition particle receptor like protein
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 605

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 144/315 (45%), Gaps = 33/315 (10%)

Query: 24  TSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           +  +L   +   + +R +D    +    +L + LI  ++ V VA+ + + +      K +
Sbjct: 296 SRGRLATWLRSYVGTREVDAEDLKNIIPDLREKLIAKNVAVEVAEHVCKSVEASLAGKRL 355

Query: 80  SVQRVLYDVSE-----LIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                LY   E      + ++L P      L        + +P+ I++ GVNGVGK+T +
Sbjct: 356 GTFDSLYKTVEDAMMASLRRILQPKREVNLLRDVAAAKAAGKPYSIVLCGVNGVGKSTSL 415

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            K++  +   G  V+LAAGDTFR  A++QL +              G+D +A+A  A  Q
Sbjct: 416 AKITYWLQQNGNSVLLAAGDTFRHGAVEQLGVHGRCLGVPVFQLGYGTDPSAVAAAAMAQ 475

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A  + +DV+++DTAGR+ ++   M  + K+I        + P  VL V +A  G N + Q
Sbjct: 476 ANKQHIDVVMVDTAGRMQDHESRMRALAKLI------HDNQPDLVLFVGEALVGNNGIDQ 529

Query: 249 VEMFHAVA-----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +  F+              G  G+++TK D    + G  + +V     P+ F+GVG+   
Sbjct: 530 LRKFNQCLVDFAPVGSRSRGIDGIVLTKFDTIDDKVGAALSMVYELGQPIVFVGVGQTYQ 589

Query: 297 DLEPFVAKDFSAVIT 311
           DL+    +   + + 
Sbjct: 590 DLKVIEPEVVVSALM 604


>gi|322503724|emb|CBZ38810.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 605

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 82/315 (26%), Positives = 148/315 (46%), Gaps = 33/315 (10%)

Query: 24  TSLKLKEGITDIISSRRLD-DGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           +  +L   +   + +R +D + +++   +L + LI  ++ V VA+ + + +      K +
Sbjct: 296 SRGRLATWLRSYVGTREVDAEDLKKIIPDLREKLIAKNVAVEVAEHVCKSVEASLAGKRL 355

Query: 80  SVQRVLYDVSE-----LIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                LY   E      + ++L P      L        + +P+ I++ GVNGVGK+T +
Sbjct: 356 GTFDSLYKTVEDAMMASLRRILQPKCEVNLLRDVAAAKAAGKPYSIVLCGVNGVGKSTSL 415

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            K++  +   G  V+LAAGDTFR  A++QL +      A       G+D +A+A  A  Q
Sbjct: 416 AKITYWLQQNGNSVLLAAGDTFRHGAVEQLGVHGRCLGAPVFQLGYGTDPSAVAAAAMAQ 475

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A  + +DV++IDTAGR+ ++   M  + K+I        + P  VL V +A  G N + Q
Sbjct: 476 ASKQHIDVVMIDTAGRMQDHESRMRALAKLI------HDNQPDLVLFVGEALVGNNGIDQ 529

Query: 249 VEMFHAVA-----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +  F+              G  G+++TK D    + G  + +V     P+ F+GVG+   
Sbjct: 530 LRKFNQCLVDFAPVGSRSRGIDGIVLTKFDTIDDKVGAALSMVYELGQPIVFVGVGQTYQ 589

Query: 297 DLEPFVAKDFSAVIT 311
           DL+    +   + + 
Sbjct: 590 DLKVIEPEVVVSALM 604


>gi|170580372|ref|XP_001895235.1| signal recognition particle receptor alpha subunit  [Brugia malayi]
 gi|158597920|gb|EDP35937.1| signal recognition particle receptor alpha subunit , putative
           [Brugia malayi]
          Length = 669

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 82/315 (26%), Positives = 141/315 (44%), Gaps = 39/315 (12%)

Query: 30  EGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRV 84
                ++ +++L       V +++ + LI  ++    A+K+ + +  K   K V +  RV
Sbjct: 360 SAFRSLVGNKKLTVEDIKPVLDKMRETLIAKNVAADPAEKLCQSVEVKLEGKVVGTFSRV 419

Query: 85  LYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
              V E +   L+ L  P                 RP++I+  GVNGVGK+T + K++  
Sbjct: 420 ASIVKESVRDALVQLLTPKRRVDILRDILEAKREKRPYIIVFCGVNGVGKSTNLAKITFW 479

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------ADFVCSEIGSDAAALAYEAFKQ 188
           +++ G KV++AA DTFR+ A++QL+      +              G D A LA  A   
Sbjct: 480 LNENGHKVLIAAADTFRAGAVEQLRTHTKHLNALHPNSVQLYEQGYGKDPAGLAAAAISI 539

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A  +  DV+++DTAGR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q
Sbjct: 540 AVERGTDVVLVDTAGRMQDNEPLMRSLAKLIQV------NQPDLVLFVGEALVGNEAVDQ 593

Query: 249 VEMFHAVAG-----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +  F+                 G+++TK D    + G  I +      P+ F+G G+   
Sbjct: 594 LVKFNQSLADHAALGDEGRLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYK 653

Query: 297 DLEPFVAKDFSAVIT 311
           DL+   A      + 
Sbjct: 654 DLKSLNASAVVHSLL 668


>gi|86129464|ref|NP_001034366.1| signal recognition particle receptor subunit alpha [Gallus gallus]
 gi|60099127|emb|CAH65394.1| hypothetical protein RCJMB04_28a6 [Gallus gallus]
          Length = 644

 Score =  195 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 146/318 (45%), Gaps = 45/318 (14%)

Query: 33  TDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY-D 87
             ++ S+ L     D V E+++D LI  ++   +A ++ E +  K   K +     +   
Sbjct: 331 KGLVGSKSLTRQNMDPVLEKMKDHLIAKNVAAEIAVQLCESVAKKLEGKVMGTFTTVTST 390

Query: 88  VSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           V + + + L+ + +P           +     RP+V+   GVNGVGK+T + K+S  + +
Sbjct: 391 VKQALQEALVQILQPQRRVDVLRDVMDAQRHRRPYVVTFCGVNGVGKSTNLAKISFWLIE 450

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAAALAYE 184
            G  V++AA DTFR+ A++QL+    R +                     G DAA +A E
Sbjct: 451 NGFSVLIAACDTFRAGAVEQLRTHTRRLNALHPPESHGGRTMVQLYEKGYGKDAAGIAME 510

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      +AP  VL V +A  G  
Sbjct: 511 AISYARNQGFDVVLVDTAGRMQDNAPLMTALAKLIAV------NAPDLVLFVGEALVGNE 564

Query: 245 ALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGE 293
           A+ Q+  F+                G+++TK D    + G  I +      P+ F+G G+
Sbjct: 565 AVDQLVKFNKALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQ 624

Query: 294 GINDLEPFVAKDFSAVIT 311
              DL    AK   A + 
Sbjct: 625 TYCDLRSLNAKAVVAALM 642


>gi|325187752|emb|CCA22298.1| signal recognition particle receptor subunit alpha [Albugo
           laibachii Nc14]
          Length = 589

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 145/333 (43%), Gaps = 34/333 (10%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKE-GITDIISSRRLDDGVREELEDLLIRSDIGV 60
           S+ + + +  SW      G +     L       I++   L+  + + +  +LI  ++  
Sbjct: 267 SDAEDSEKEGSWSF----GNSKVRNFLSSITGNKILTKEDLEPALNQ-MRQILIGKNVAS 321

Query: 61  AVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSH 109
            VA ++ + + +    K + S  RV   V   +   L+ +  P           +   S 
Sbjct: 322 EVADELCDSVESNVVGKRLESFTRVSSVVRGALEAALLRILTPKKSTDILRAILDVRASG 381

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           R + I+ VGVNGVGK+T + K+   +   G+KVM+AA DTFRS A++QL   A       
Sbjct: 382 RAYSIVFVGVNGVGKSTSLSKICYYLKSKGVKVMIAACDTFRSGAVEQLNQHAKVLDVPL 441

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  + AA+A EA + A     D ++IDTAGR+ NN  LM  + K++        + 
Sbjct: 442 FERGYAKNPAAVAQEAIQHATTNSFDCVLIDTAGRMQNNEPLMRALAKLVS------SNN 495

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVA----------GTTGLIMTKMDG-TARGGGLIPI 278
           P  +L V +A  G + + Q+ MF              G  G+++TK D    + G  + +
Sbjct: 496 PDLILFVGEALVGNDGINQLSMFDRALADSSDRQDAHGIDGIVITKFDTIDDKVGAAVSL 555

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           V     P+ F+G G+    L+    +     + 
Sbjct: 556 VYKTGQPIMFVGTGQKYTHLKKLNVQTVMRNLL 588


>gi|148298802|ref|NP_001091807.1| signal recognition particle receptor alpha subunit [Bombyx mori]
 gi|111608125|gb|ABH10806.1| signal recognition particle receptor alpha subunit [Bombyx mori]
          Length = 610

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           +  +  +   +  ++ ++ L +     V ++L D LI  ++   +A K+ + +  K   K
Sbjct: 287 SKKTGGMFSLLKGLVGAKALSEETMRPVLDKLRDHLIGKNVAADIANKLCDSVAIKLEGK 346

Query: 78  -----DVSVQRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
                D   + V   ++E + ++L P      L    +     RP+V+   GVNGVGK+T
Sbjct: 347 VLGTFDSVAKTVKATLTESLVRILSPKRRVDILRDCLHAKQEGRPYVMAFCGVNGVGKST 406

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+   + +  L V++AA DTFR+ A++QL+      +                    
Sbjct: 407 NLAKICFWLIENDLSVLIAACDTFRAGAVEQLRTHTRHLNALHPPARHHARHMVTLYEKG 466

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA + A   K DV++IDTAGR+ +N  LM  + K+I V      + P +V
Sbjct: 467 YGKDAAGIAMEAIRYASDTKTDVVLIDTAGRMQDNEPLMRALAKLIAV------NEPDTV 520

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 521 LFVGEALVGNEAVDQLVKFNQALADYSSSSSPHVIDGIVLTKFDTIDDKVGAAISMTYIT 580

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL+   A      + 
Sbjct: 581 GQPIVFVGTGQTYTDLKALNANAVVHALM 609


>gi|303281744|ref|XP_003060164.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
 gi|226458819|gb|EEH56116.1| type II secretory pathway family protein [Micromonas pusilla
           CCMP1545]
          Length = 628

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 137/290 (47%), Gaps = 29/290 (10%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMP- 98
           V E L+   +  ++   +A+++ E +      + ++        V   + + + ++L P 
Sbjct: 343 VLETLKTNFMNKNVAEEIAERLCESVAASLRGRKLASFSSLSAMVKRAMEDALTRILTPT 402

Query: 99  -----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                L +      S RP+VI  VGVNGVGK+T + K++  +    ++VM+AA DTFR+ 
Sbjct: 403 RSVDVLREVKTAKASGRPYVITFVGVNGVGKSTNLSKVAYWLLQHDVRVMIAACDTFRAG 462

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++QL+    R            D A++A EA K A+    +V+++DTAGR+ +N  LM 
Sbjct: 463 AVEQLRTHCKRLGVPLFERGYEKDPASVASEAVKAARRTGAEVVLVDTAGRMQDNEPLMR 522

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG-----------TTGLI 262
            + K+I V      + P  VL V +A  G +A+ Q+  F+                 G++
Sbjct: 523 ALAKLINV------NEPDLVLFVGEALVGNDAVDQLSKFNERLSDLATDAKKRRVIDGVV 576

Query: 263 MTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           ++K D    + G  + +V T   PV F+G G+   DL+    +     + 
Sbjct: 577 LSKFDTIDDKVGAALSMVYTSGAPVMFVGCGQTYTDLKRLNVRSVVKSLL 626


>gi|323453480|gb|EGB09351.1| hypothetical protein AURANDRAFT_36905 [Aureococcus anophagefferens]
          Length = 577

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 136/326 (41%), Gaps = 32/326 (9%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
             +   W  +      S    +    T  ++   +D  + E+L   L+  ++ V VA  I
Sbjct: 261 EEKPAGWFGR--SALGSLVANVSG--TQTLTRELVDPAM-EKLRTTLMEKNVAVEVADAI 315

Query: 67  VEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNW-----------DFSHRPHVI 114
              +      K V    R    V + +   +  +  P                   P+ I
Sbjct: 316 TATVSESLVGKKVERFARAKTLVRDALKDAVARVLTPKRSTDVLREVLAAKKRPKGPYSI 375

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + VG+NGVGK+T + K++  + + G+ VM+ A DTFRS A++QL+  A     +      
Sbjct: 376 VFVGINGVGKSTSLSKVAYYLKEHGVDVMITACDTFRSGAVEQLRSHAKCLDVELYEKGY 435

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D   +A  +   A+++  + ++IDTAGR+ NN  LM  + K+I V      ++P  VL
Sbjct: 436 LKDPGDVAKASLDHAKSRGKECVLIDTAGRMQNNERLMRELAKLISV------NSPDLVL 489

Query: 235 QVLDATTGQNALRQVEMFHAVA--------GTTGLIMTKMDG-TARGGGLIPIVVTHKIP 285
            V +A  G + + Q+ MF+              GL++TK D    + G  + +      P
Sbjct: 490 FVGEALVGNDGIDQLNMFNKSLAQFCPDGRQIDGLVLTKFDTIDDKVGATLSMTYKTGQP 549

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + F+GVG+    L+          + 
Sbjct: 550 IMFIGVGQKYTHLKKLSVNAVINALF 575


>gi|307172333|gb|EFN63821.1| Signal recognition particle receptor subunit alpha-like protein
           [Camponotus floridanus]
          Length = 611

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 83/328 (25%), Positives = 148/328 (45%), Gaps = 45/328 (13%)

Query: 23  STSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK- 77
             +  +      ++ S+ L       V E+L+D LI  ++   +AQK+ + +  K   K 
Sbjct: 289 KKNKSMFSMFKSLVGSKSLKQEDMLPVLEKLKDHLITKNVAADIAQKLCDSVGMKLEGKV 348

Query: 78  ----DVSVQRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
               D     +   +++ + ++L P      L        S+RP+V+   GVNGVGK+T 
Sbjct: 349 LGTFDSVANTIKATLTDALVQILSPKRRIDILRDALEAKKSNRPYVMTFCGVNGVGKSTN 408

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEI 174
           + K+   + +   +V++AA DTFR+ A++QL+      +                     
Sbjct: 409 LAKICFWLIENNFRVLIAACDTFRAGAVEQLRTHTRHLNALHPPEKHRNQSMVQLYEKGY 468

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A EA + A+  ++D++++DTAGR+ +N  LM  + K+I+V      + P  VL
Sbjct: 469 GKDAAGIAMEAIRFAKDSRIDIVLVDTAGRMQDNEPLMRALTKLIKV------NEPDLVL 522

Query: 235 QVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHK 283
            V +A  G  A+ Q+  F+                G+++TK D    + G  I +     
Sbjct: 523 FVGEALVGNEAVDQLVKFNQALADYSQSANPHIIDGIVLTKFDTIDDKVGAAITMTYITG 582

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            P+ F+G G+   DL+   AK     + 
Sbjct: 583 QPIVFVGTGQTYTDLKSLNAKAVVHALM 610


>gi|189531921|ref|XP_697518.3| PREDICTED: signal recognition particle receptor subunit alpha
           isoform 2 [Danio rerio]
          Length = 650

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 144/319 (45%), Gaps = 45/319 (14%)

Query: 32  ITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-Y 86
           +  ++ S+ L     + V ++++D LI  ++   +A ++ + +  K   K +     +  
Sbjct: 336 LKGLVGSKNLTQEDMEPVLDKMKDHLIAKNVAAEIASQLCDSVAKKLEGKVMGTFTTVAS 395

Query: 87  DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            V + +   L+ + +P                 +P VI   GVNGVGK+T + K+S  + 
Sbjct: 396 TVKQALQDSLVQILQPKRRVDILRDVLEARSQRKPFVITFCGVNGVGKSTNLAKISYWLI 455

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAAALAY 183
           + G  V++AA DTFR+ A++QL+    R +                     G DAA +A 
Sbjct: 456 ENGFTVLIAACDTFRAGAVEQLRTHQRRLNSLHPPEKHGGQPAVQLFEKGYGKDAAGIAM 515

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA   A+ +  DV++IDTAGR+ +N+ LM  + K+I V      + P  VL V +A  G 
Sbjct: 516 EAIAFARNQGFDVVLIDTAGRMQDNAPLMTALAKLIAV------NTPDLVLFVGEALVGN 569

Query: 244 NALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVG 292
            A+ Q+  F+                G+++TK D    + G  I +      P+ F+G G
Sbjct: 570 EAVDQLVKFNRALADHSKSDKPRLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 629

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +  +DL    A+   + + 
Sbjct: 630 QTYSDLRSLNARAVVSALM 648


>gi|149238239|ref|XP_001524996.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451593|gb|EDK45849.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 562

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 86/314 (27%), Positives = 149/314 (47%), Gaps = 37/314 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           F+  S  L   I        LD+ V ++  + LI  +I    A+ I++++  +   K V+
Sbjct: 262 FSKLSSYLGGSI-------NLDE-VSKKFYEQLISKNIAPGTAKAIIDKIKARLSGKKVT 313

Query: 81  VQRVLYDVSELIHKMLMPLSK-----PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +      +++ + K+L P            + + RP+VI VVGVNGVGK+T + KL+   
Sbjct: 314 MTIFKQALTDELTKILTPNVSTDLLYEIKRNNTGRPYVISVVGVNGVGKSTNLAKLAYWF 373

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-----------ADFVCSEIGSDAAAL--A 182
               L V++ A DTFRS A++QLK+  +  +            D      G     +  A
Sbjct: 374 LQNNLNVLICACDTFRSGAVEQLKVHVNNLNQLNSGLSNKSQIDIYEKGYGGGDHVVTTA 433

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +A + A+A   DV++IDTAGR H+N+ LMA + K        D   P+ ++ V +A  G
Sbjct: 434 KQAIEYAKANAFDVVLIDTAGRTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVG 487

Query: 243 QNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGIND 297
            +++ Q   F+   G        I++K+D      G +I +V+  K+P+ F+G G+   D
Sbjct: 488 TDSVEQATNFNQAFGNKRSLDFFIVSKVDTVGDLVGTMINMVMATKVPILFVGTGQTYTD 547

Query: 298 LEPFVAKDFSAVIT 311
           ++    K    ++ 
Sbjct: 548 IKRLSVKQVVEMLM 561


>gi|226287163|gb|EEH42676.1| signal recognition particle 54 kDa protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 530

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
             V + +  ++ P  +PF      R +VI+ VG+ G GKTT   KL++     G +  L 
Sbjct: 77  KTVFDQLVALVDPHCEPFKPK-KGRSNVIMFVGLQGAGKTTTCTKLARHYQTRGFRAALV 135

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             DTFR+ A DQLK  A +    +  S   +D   +A E   + + ++ D++I+DT+GR 
Sbjct: 136 CADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPVVVAAEGVAKFKKERFDIIIVDTSGRH 195

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              + L A + ++   +K      P   + VLD T GQ A  Q   F A A    +I+TK
Sbjct: 196 KQEADLFAEMTQIQTAIK------PDQTILVLDGTIGQAAEIQSSAFKATADFGAIIITK 249

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
            DG A GGG I  V     P+ FLG GE + DLE F  K F   + G  D  
Sbjct: 250 TDGAAAGGGAISAVAATHTPIIFLGTGEHMLDLERFAPKPFIQKLLGMGDMA 301


>gi|197101205|ref|NP_001125759.1| signal recognition particle receptor subunit alpha [Pongo abelii]
 gi|55729093|emb|CAH91283.1| hypothetical protein [Pongo abelii]
          Length = 638

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 314 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 373

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 374 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 433

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 434 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKQGGRTMVQLFEKG 493

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 494 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 547

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 548 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYVT 607

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 608 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 636


>gi|326676235|ref|XP_003200533.1| PREDICTED: signal recognition particle receptor subunit alpha
           isoform 1 [Danio rerio]
          Length = 622

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 144/319 (45%), Gaps = 45/319 (14%)

Query: 32  ITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-Y 86
           +  ++ S+ L     + V ++++D LI  ++   +A ++ + +  K   K +     +  
Sbjct: 308 LKGLVGSKNLTQEDMEPVLDKMKDHLIAKNVAAEIASQLCDSVAKKLEGKVMGTFTTVAS 367

Query: 87  DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            V + +   L+ + +P                 +P VI   GVNGVGK+T + K+S  + 
Sbjct: 368 TVKQALQDSLVQILQPKRRVDILRDVLEARSQRKPFVITFCGVNGVGKSTNLAKISYWLI 427

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAAALAY 183
           + G  V++AA DTFR+ A++QL+    R +                     G DAA +A 
Sbjct: 428 ENGFTVLIAACDTFRAGAVEQLRTHQRRLNSLHPPEKHGGQPAVQLFEKGYGKDAAGIAM 487

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA   A+ +  DV++IDTAGR+ +N+ LM  + K+I V      + P  VL V +A  G 
Sbjct: 488 EAIAFARNQGFDVVLIDTAGRMQDNAPLMTALAKLIAV------NTPDLVLFVGEALVGN 541

Query: 244 NALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVG 292
            A+ Q+  F+                G+++TK D    + G  I +      P+ F+G G
Sbjct: 542 EAVDQLVKFNRALADHSKSDKPRLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 601

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +  +DL    A+   + + 
Sbjct: 602 QTYSDLRSLNARAVVSALM 620


>gi|290974685|ref|XP_002670075.1| signal recognition particle receptor alpha subunit family protein
           [Naegleria gruberi]
 gi|284083630|gb|EFC37331.1| signal recognition particle receptor alpha subunit family protein
           [Naegleria gruberi]
          Length = 678

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 143/321 (44%), Gaps = 38/321 (11%)

Query: 23  STSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
                     +++ + R L     D V E+ +  L++ ++   +A  I + +      K 
Sbjct: 363 KKGNIFSTFFSNLTNGRTLTKEDLDPVMEDFKQSLMKKNVAQEIAVSICDSVSENLVGKK 422

Query: 79  VSV-----QRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +         V   + E + ++L P      L +        RP+VI++ GVNGVGK+T 
Sbjct: 423 LGTFSSIKSEVTKAMEEALTRILTPSRTINILKEASTVREQGRPYVIVMCGVNGVGKSTT 482

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           + K+   +       ++AA DTFRS A++QL++ A   +        G +AA+LA EA  
Sbjct: 483 LSKICYWLLQKEFSCLIAACDTFRSGAVEQLQVHARCLNVPVFQKGYGKNAASLAKEAIN 542

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    D++++DTAGR+ +N  LM  + ++I+V      + P  VL V +A  G + + 
Sbjct: 543 HAKKNGFDIVLVDTAGRMQDNEPLMKSLIELIQV------NTPDLVLFVGEALVGNDGID 596

Query: 248 QVEMFHAVAG----------------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLG 290
           Q++ F++                     G+++TK D    + G  + +V     P+ F+G
Sbjct: 597 QLQKFNSSLKVLASSENAATKQTKDLIDGIVLTKFDTIDEKVGAAVSMVHKTGHPIVFVG 656

Query: 291 VGEGINDLEPFVAKDFSAVIT 311
           VG+   DL     +     + 
Sbjct: 657 VGQTYTDLRTLKVESVVKSLL 677


>gi|126327281|ref|XP_001365549.1| PREDICTED: similar to Proteasome (prosome, macropain) 26S subunit,
           non-ATPase, 12 [Monodelphis domestica]
          Length = 634

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/319 (26%), Positives = 145/319 (45%), Gaps = 45/319 (14%)

Query: 32  ITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY- 86
           +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K +     +  
Sbjct: 320 LKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIALQLCESVANKLEGKVMGTFSTVTS 379

Query: 87  DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            V + + + L+ + +P           +     RP+V+   GVNGVGK+T + K+S  + 
Sbjct: 380 TVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLL 439

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAAALAY 183
           +    V++AA DTFR+ A++QL+    R S                     G DAA +A 
Sbjct: 440 ENNFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPENHGGRTMVHLFEKGYGKDAAGIAM 499

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G 
Sbjct: 500 EAISFARNQAFDVVLVDTAGRMQDNAPLMTALAKLIAV------NTPDLVLFVGEALVGN 553

Query: 244 NALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVG 292
            A+ Q+  F+                G+++TK D    + G  I +      P+ F+G G
Sbjct: 554 EAVDQLVKFNKALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTG 613

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +  +DL    AK   A + 
Sbjct: 614 QTYSDLRSLNAKAVVAALM 632


>gi|291383611|ref|XP_002708642.1| PREDICTED: signal recognition particle receptor [Oryctolagus
           cuniculus]
          Length = 637

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 313 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 372

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 373 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 432

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 433 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKG 492

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 493 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 546

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 547 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 606

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 607 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 635


>gi|193206261|ref|NP_741303.2| hypothetical protein F38A1.8 [Caenorhabditis elegans]
          Length = 625

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 147/322 (45%), Gaps = 39/322 (12%)

Query: 23  STSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
             S      I  ++  ++L       + E++ + LI  ++    A+KI + +++K   K 
Sbjct: 309 KQSGGWFSMIKGLVGEKKLSAEDLNPLIEKMRENLILKNVASEPAEKICQSVVSKLEGKV 368

Query: 79  VS-----VQRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           V+      Q V   V E + ++L P      L          RP+VI+  GVNGVGK+T 
Sbjct: 369 VNNFSRVAQEVKTAVRESLVQLLTPKHRVDILRDVIEAKRDGRPYVIVFCGVNGVGKSTN 428

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------ADFVCSEIGSDAAAL 181
           + K++  +++   +V++AAGDTFR+ A++QL+  A   +              G D A L
Sbjct: 429 LAKITFWLTENKHRVLIAAGDTFRAGAVEQLRTHARYLNDLHKNSVLLHEQGYGKDPAGL 488

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A  A K+A  +  DV+++DTAGR+ +N  LM  + K+IRV      + P  VL V +A  
Sbjct: 489 AAAAIKKAAEQDFDVVLVDTAGRMQDNEPLMRELAKLIRV------NEPDLVLFVGEALV 542

Query: 242 GQNALRQVEMFHAVAG-----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFL 289
           G  A+ Q+  F+                 G+++TK D    + G  + +      P+ F+
Sbjct: 543 GNEAVDQLVKFNEALANHASPGQKPRLIDGIVLTKFDTIDDKVGAAVSMTYITGQPIVFV 602

Query: 290 GVGEGINDLEPFVAKDFSAVIT 311
           G G+  +DL           + 
Sbjct: 603 GCGQTYSDLRNLNVGAVVHSLL 624


>gi|23308697|ref|NP_003130.2| signal recognition particle receptor subunit alpha isoform 1 [Homo
           sapiens]
 gi|20455516|sp|P08240|SRPR_HUMAN RecName: Full=Signal recognition particle receptor subunit alpha;
           Short=SR-alpha; AltName: Full=Docking protein alpha;
           Short=DP-alpha
 gi|12654649|gb|AAH01162.1| Signal recognition particle receptor (docking protein) [Homo
           sapiens]
 gi|14318624|gb|AAH09110.1| Signal recognition particle receptor (docking protein) [Homo
           sapiens]
 gi|15488908|gb|AAH13583.1| Signal recognition particle receptor (docking protein) [Homo
           sapiens]
 gi|119588090|gb|EAW67686.1| signal recognition particle receptor ('docking protein'), isoform
           CRA_b [Homo sapiens]
 gi|123981146|gb|ABM82402.1| signal recognition particle receptor ('docking protein') [synthetic
           construct]
 gi|123995977|gb|ABM85590.1| signal recognition particle receptor ('docking protein') [synthetic
           construct]
 gi|168277846|dbj|BAG10901.1| signal recognition particle receptor subunit alpha [synthetic
           construct]
 gi|189065456|dbj|BAG35295.1| unnamed protein product [Homo sapiens]
          Length = 638

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 314 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 373

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 374 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 433

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 434 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKG 493

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 494 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 547

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 548 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 607

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 608 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 636


>gi|109109214|ref|XP_001112588.1| PREDICTED: signal recognition particle receptor subunit alpha
           isoform 1 [Macaca mulatta]
          Length = 638

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 314 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 373

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 374 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 433

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 434 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKG 493

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 494 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 547

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 548 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 607

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 608 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 636


>gi|49471607|gb|AAT66125.1| signal recognition particle [Mycoplasma arthritidis]
          Length = 265

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/273 (26%), Positives = 123/273 (45%), Gaps = 23/273 (8%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +++ K     + K+     DI+        V  E++  L+ +D+ + V +   + +  K 
Sbjct: 7   KRMQKSMDKINKKMSINEEDIL-------EVLREVKLALLEADVNLDVVRTFTKAVKEKA 59

Query: 75  YAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               +       Q VL    + +  +L   + P        P  I++VG+ G GKTT   
Sbjct: 60  LNAKIIGKLNQQQTVLKIFKDELTTILG--TNPIEISLKKIPTTIMMVGLQGSGKTTTAA 117

Query: 130 KLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           KL+       L    +L   D +R AA +QL+  A +T  DF   E       +A EA K
Sbjct: 118 KLATFFKKKKLCQNPLLVGDDIYRPAAREQLEQLAKQTQTDFFTKEKNDAIF-IAKEAIK 176

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A   + D++I+DTAGRL  +  LM  +  + + +       P  +L V+DA +GQ+ + 
Sbjct: 177 RANDNRNDLVIVDTAGRLAIDENLMDELINIKKAIH------PDYILLVVDAMSGQDVIN 230

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
             ++FH     +  I+TK+D  ARGG  + I  
Sbjct: 231 VAKIFHENLNLSATIITKLDSDARGGAALSITH 263


>gi|68161019|gb|AAY86941.1| lr0114 [Lactobacillus reuteri]
          Length = 398

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 89/244 (36%), Positives = 136/244 (55%), Gaps = 5/244 (2%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S +    +    ++K  +G   +       +   +++ R +D+   ++LED+LI SD+G 
Sbjct: 155 SPEPEEDQESETVKKYDRGLEKSRTGFGARLNKFLANFRHVDEDFFDDLEDMLIESDVGY 214

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDF---SHRPHVILV 116
            +A K+ +EL  +   ++   ++ + +V  E + ++     +  N D       P VI+ 
Sbjct: 215 DMAMKLSDELREEVKLQNAKSKQDVSNVIIEKMVELYDEAGQDENPDLTMTKEGPTVIMF 274

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VGVNG GKTT IGK++      G KV+LAA DTFR+ A +QL +WA R   D V      
Sbjct: 275 VGVNGAGKTTTIGKMAALFKKQGKKVLLAAADTFRAGATEQLDVWAKRDGVDIVTGPENG 334

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A K+A+ +  D+L +DTAGRL N   LM  +GKM R+L R  PHAPH VL V
Sbjct: 335 DPAAVVFDAVKRAKDENYDILFVDTAGRLQNKVNLMNELGKMKRILTREIPHAPHEVLLV 394

Query: 237 LDAT 240
           LDAT
Sbjct: 395 LDAT 398


>gi|295424842|ref|NP_001171313.1| signal recognition particle receptor subunit alpha isoform 2 [Homo
           sapiens]
          Length = 610

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 286 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 345

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 346 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 405

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 406 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKG 465

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 466 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 519

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 520 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 579

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 580 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 608


>gi|30866|emb|CAA29608.1| unnamed protein product [Homo sapiens]
          Length = 638

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 314 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 373

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 374 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 433

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 434 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKG 493

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 494 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 547

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 548 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 607

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 608 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 636


>gi|296216603|ref|XP_002754616.1| PREDICTED: signal recognition particle receptor subunit alpha
           isoform 1 [Callithrix jacchus]
          Length = 637

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 313 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 372

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 373 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 432

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 433 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKG 492

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 493 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 546

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 547 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 606

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 607 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 635


>gi|119588088|gb|EAW67684.1| signal recognition particle receptor ('docking protein'), isoform
           CRA_a [Homo sapiens]
 gi|119588089|gb|EAW67685.1| signal recognition particle receptor ('docking protein'), isoform
           CRA_a [Homo sapiens]
          Length = 414

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 90  KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 149

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 150 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 209

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 210 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKG 269

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 270 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 323

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 324 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 383

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 384 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 412


>gi|311264316|ref|XP_003130104.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           isoform 1 [Sus scrofa]
          Length = 638

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 148/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E + +K   K
Sbjct: 314 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVASKLEGK 373

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 374 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKST 433

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 434 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPENHGGRTMVQLFEKG 493

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 494 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 547

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 548 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 607

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 608 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 636


>gi|321309532|ref|YP_004191861.1| signal recognition particle protein Ffh [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801376|emb|CBY92022.1| signal recognition particle protein Ffh [Mycoplasma haemofelis str.
           Langford 1]
          Length = 445

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 142/302 (47%), Gaps = 16/302 (5%)

Query: 23  STSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           S    L   +        + +     +  E+   L+ SD+ + V +  ++E+ +    K 
Sbjct: 5   SVKEVLSRYVKRGFRYSEIKEEELAPIFREIRIALLNSDVNLKVVKSFLDEVKSDLLGKP 64

Query: 79  VSVQRVLYDVS-ELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +   + L  V    I + L+ +  +K    + S + + ILV+G+NG GKTT + K+SK +
Sbjct: 65  IDKDQELDVVVFSTIKRHLINILGTKHVPLNLSSKLNKILVIGLNGSGKTTTVAKISKHL 124

Query: 136 SDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           S      KV   + D +R  A DQL+  ++    +   +E  + ++ +  E+  +A    
Sbjct: 125 SSLKGSSKVRNISLDIYRPGAFDQLQHLSNSFGVESYFAENKNFSSFI-KESIFEADKDG 183

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +D L+ D+ G L +N  LM  +  + +++       P  VL VLDA  GQ  L  +  F+
Sbjct: 184 IDFLVFDSYGLLSDNEDLMKELSSIRKLIN------PSEVLFVLDAMAGQEILDVLTKFN 237

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
              G TGL+++K D  +  G         K+P+ FLG GE +++L  F  +  +++I G 
Sbjct: 238 EEFGITGLVISKADSLSPMGAAFSASYLFKLPIKFLGDGETVDNLSTFHPERIASLILGE 297

Query: 314 LD 315
            D
Sbjct: 298 GD 299


>gi|296216605|ref|XP_002754617.1| PREDICTED: signal recognition particle receptor subunit alpha
           isoform 2 [Callithrix jacchus]
          Length = 609

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 285 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 344

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 345 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 404

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 405 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKG 464

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 465 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 518

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 519 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 578

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 579 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 607


>gi|311264318|ref|XP_003130105.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           isoform 2 [Sus scrofa]
          Length = 610

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 148/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E + +K   K
Sbjct: 286 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVASKLEGK 345

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 346 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKST 405

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 406 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPENHGGRTMVQLFEKG 465

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 466 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 519

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 520 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 579

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 580 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 608


>gi|301782169|ref|XP_002926499.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           [Ailuropoda melanoleuca]
 gi|281338698|gb|EFB14282.1| hypothetical protein PANDA_016150 [Ailuropoda melanoleuca]
          Length = 638

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 314 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 373

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 374 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKST 433

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 434 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPENHGGRTMVQLFEKG 493

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 494 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 547

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 548 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 607

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 608 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 636


>gi|167376693|ref|XP_001734103.1| signal recognition particle receptor alpha subunit [Entamoeba
           dispar SAW760]
 gi|165904558|gb|EDR29773.1| signal recognition particle receptor alpha subunit, putative
           [Entamoeba dispar SAW760]
          Length = 488

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 85/332 (25%), Positives = 148/332 (44%), Gaps = 37/332 (11%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M  Q+    + S + K+  GF  T +        I  +  L+    E++E +LI  ++  
Sbjct: 172 MKKQEKPKSNGSTLSKIFAGFNGTRI--------IDEAESLEQA--EKIEKMLIEKNVNS 221

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF----------NWDFSHR 110
            +A +I   + T    K V    +   V + + ++L  +  P               +  
Sbjct: 222 EIAAQIKSNIQTLLNGKKVDTFTLRGTVIQGVTEVLTRIMTPTSPIDVAKEISEKKANGD 281

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            + ++ +GVNGVGK+T + K++  ++    KVM+AA DTFR+ A+DQL + A +      
Sbjct: 282 VYTMVFLGVNGVGKSTSLSKMACWLTSLNYKVMIAACDTFRAGAVDQLAVHAQKLGITLY 341

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                +D +A+A  A K+A+    DVL++DTAGR+  N  L      M  + K +     
Sbjct: 342 EKGYDTDPSAIARNALKRAKEDGYDVLLVDTAGRMQGNDAL------MKAIAKLVHSAQT 395

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVA----------GTTGLIMTKMDG-TARGGGLIPIV 279
             VL V +A  G +A+ Q+  F+             G  G+I+TK D    + G  I + 
Sbjct: 396 DLVLFVAEALVGNDAVNQLTTFNRYIIDYAPNKQSKGVNGIILTKFDTIDDKVGAAISLT 455

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
               IP+ F+G G+   DL+     +  + + 
Sbjct: 456 YCTGIPILFVGSGQHYTDLKLLDIDELISTLL 487


>gi|253748466|gb|EET02574.1| Signal recognition particle receptor [Giardia intestinalis ATCC
           50581]
          Length = 572

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/323 (25%), Positives = 142/323 (43%), Gaps = 37/323 (11%)

Query: 19  KGFASTSLKLKEGITDII-SSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTK 73
           K    TS K  E I  +  S + L     E+L       L+  ++   VA ++++ +   
Sbjct: 257 KSLVFTSSK--ETIFGLFNSKKELTANDLEKLLSSLRQALLSQNVASEVADELLKGVSAN 314

Query: 74  RYAKDV----------------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
              + +                S+++++      + K ++   +        RP+VI + 
Sbjct: 315 LEGEKIGLFSRTKSLVIQTLKDSIRKIVQFEDRFLLKRILAAKEERAAGRRSRPYVICMT 374

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVNGVGKTT I KL     +   + ++ A D+FRS A++QL+    R  A       G +
Sbjct: 375 GVNGVGKTTSIAKLLYIFRNNDFRSLVCACDSFRSGAVEQLQEHCTRLGATLYSQGYGKN 434

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           A+A+A    K+A++   D+ +IDT GR +NN  LM  +G ++        +AP  VL V 
Sbjct: 435 ASAIAKYGIKEAESLDYDICLIDTTGRQYNNGPLMQALGALV------LENAPDVVLFVG 488

Query: 238 DATTGQNALRQVEMFHAVA-------GTTGLIMTKMDGTA-RGGGLIPIVVTHKIPVYFL 289
           +A TG   + Q++ F           G  G+I+TK D    + G  + +     IP+ ++
Sbjct: 489 EALTGNEGIEQLKQFDCALRSYTNSRGVDGIILTKFDTCGDKVGAALNLCFVCNIPIIYV 548

Query: 290 GVGEGINDLEPFVAKDFSAVITG 312
           G G+   D         + +I G
Sbjct: 549 GTGQSYPDFAILDPSHIADLIVG 571


>gi|189236353|ref|XP_001807129.1| PREDICTED: similar to signal recognition particle receptor alpha
           subunit (sr-alpha) [Tribolium castaneum]
 gi|270005877|gb|EFA02325.1| hypothetical protein TcasGA2_TC007993 [Tribolium castaneum]
          Length = 614

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 144/327 (44%), Gaps = 45/327 (13%)

Query: 24  TSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           +   +      ++ S+ L         ++++D LI  ++   +A K+ E +  K   K +
Sbjct: 293 SRGGMFSIFKGLVGSKNLTAADMQPALDKMKDHLIAKNVAADIAIKLCESVALKLEGKVL 352

Query: 80  SVQRVL-----YDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                +       ++E + ++L P      L        S RP+V+   GVNGVGK+T +
Sbjct: 353 GTFESVASTVKSTLTESLVQILSPKRRVDILRDCMEAQRSGRPYVMTFCGVNGVGKSTNL 412

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIG 175
            K+   + +  ++V++AA DTFR+ A++QL+      +                     G
Sbjct: 413 AKICFWLIENNMRVLIAACDTFRAGAVEQLRTHMRHLNALHPPERHGGRQMVQLYEKGYG 472

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            DAA +A EA K A   + DV++IDTAGR+ +N  LM  + K+I+V      + P  VL 
Sbjct: 473 KDAAGIAMEAIKYATDSRFDVVLIDTAGRMQDNEPLMRALTKLIKV------NEPDLVLF 526

Query: 236 VLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKI 284
           V +A  G  A+ Q+  F+                G+++TK D    + G  I +      
Sbjct: 527 VGEALVGNEAVDQLVKFNQALADYSSSSNPHIIDGIVLTKFDTIDDKVGAAISMTYITGQ 586

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVIT 311
           P+ F+G G+   DL+   AK     + 
Sbjct: 587 PIVFVGTGQTYTDLKALNAKAVVHSLM 613


>gi|115497558|ref|NP_001068590.1| signal recognition particle receptor subunit alpha [Bos taurus]
 gi|122139924|sp|Q3MHE8|SRPR_BOVIN RecName: Full=Signal recognition particle receptor subunit alpha;
           Short=SR-alpha; AltName: Full=Docking protein alpha;
           Short=DP-alpha
 gi|75773717|gb|AAI05265.1| Signal recognition particle receptor (docking protein) [Bos taurus]
          Length = 639

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 315 KGTLGGMFGMLKGLVGSKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 374

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 375 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKST 434

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 435 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKG 494

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 495 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 548

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 549 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 608

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 609 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 637


>gi|124514042|ref|XP_001350377.1| signal recognition particle receptor alpha subunit, putative
           [Plasmodium falciparum 3D7]
 gi|23615794|emb|CAD52786.1| signal recognition particle receptor alpha subunit, putative
           [Plasmodium falciparum 3D7]
          Length = 576

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 157/315 (49%), Gaps = 36/315 (11%)

Query: 26  LKLKEGITDIIS-SRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-- 78
            KL + +  + S + ++++     +  E+++ L+  ++ + +   +++ +      K   
Sbjct: 267 NKLNDSLFKMFSYNSKIEEEDIEKILHEIKNKLLSKNVAIGICDTLIDRMKENLIGKKKT 326

Query: 79  ---VSVQRVLYDV-SELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              ++V++ + +V SE I  +L+P      L          + + I+ +GVNGVGK+T +
Sbjct: 327 LFALNVKKTVSNVLSETIQSILIPKDSVDVLRSAIESKSMGKLYSIVFLGVNGVGKSTNL 386

Query: 129 GKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            K+   + + G LK+M+AA DTFR+ A++QL+I A+  +        G DA+A+A EA  
Sbjct: 387 AKVCYYLKNKGNLKIMIAACDTFRAGAVEQLRIHANCLNVFLYEKGYGKDASAIAKEAIL 446

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ +  DV++IDTAGR+ +N  LM  +GK+I        + P  +L V +A  G +A+ 
Sbjct: 447 YAKKENYDVILIDTAGRMQDNEPLMRSLGKLI------LYNNPDLILFVGEALVGNDAID 500

Query: 248 QVEMFHAVA-----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGI 295
           Q++ F+                 G+I+TK D    + G  + +V     P+ F+GVG+  
Sbjct: 501 QLKKFNQALTDATCNSTNKRTIDGIILTKFDTVDDKVGTALSMVYLTGKPIVFVGVGQKY 560

Query: 296 NDLEPFVAKDFSAVI 310
             L+ F        +
Sbjct: 561 THLKKFNVNMVVKAL 575


>gi|159118036|ref|XP_001709237.1| Signal recognition particle receptor [Giardia lamblia ATCC 50803]
 gi|157437353|gb|EDO81563.1| Signal recognition particle receptor [Giardia lamblia ATCC 50803]
          Length = 571

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/313 (24%), Positives = 144/313 (46%), Gaps = 35/313 (11%)

Query: 29  KEGITDIISSRR-LD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV---- 79
           +E +  + ++++ L     + +   L   LI  ++   VA ++++ +      + V    
Sbjct: 264 REAVFGLFNNKKELTSNDVEKLLSSLRQALINQNVASDVADELLKGVSASLEGEKVGLFS 323

Query: 80  ------------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
                       S+++++      + K ++   +        RP+VI + GVNGVGKTT 
Sbjct: 324 RTKSVVIQALKDSIRKIVQFEDRFLMKRILASKEERAAGQRSRPYVICMTGVNGVGKTTS 383

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL     + GL+ ++ A D+FRS A++QL+   +R  A       G +A+A+A    K
Sbjct: 384 IAKLLYIFKNNGLRSLVCACDSFRSGAVEQLQEHCNRLGATLYSQGYGKNASAIAKYGIK 443

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A++   D+ +IDT GR +NN  LM  +G ++        +AP  VL V +A TG   + 
Sbjct: 444 EAESLNYDICLIDTTGRQYNNGPLMQALGALV------LENAPDVVLFVGEALTGNEGVE 497

Query: 248 QVEMFHAVA-------GTTGLIMTKMDGTA-RGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           Q++ F           G  G+I+TK D    + G  + +     +P+ ++G G+   D  
Sbjct: 498 QLKQFDCALKSYTNSRGIDGIILTKFDTCGDKVGAALNLCFVCDLPILYVGTGQSYPDFG 557

Query: 300 PFVAKDFSAVITG 312
                  + +I G
Sbjct: 558 VLDPSHIADLIVG 570


>gi|194212972|ref|XP_001505146.2| PREDICTED: similar to Signal recognition particle receptor (docking
           protein) [Equus caballus]
          Length = 639

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 86/329 (26%), Positives = 148/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 315 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 374

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 375 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKST 434

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+  A R S                    
Sbjct: 435 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHARRLSALHPPENHGGRTMVYLFEKG 494

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 495 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 548

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 549 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 608

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 609 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 637


>gi|18313822|ref|NP_560489.1| signal recognition particle protein [Pyrobaculum aerophilum str.
           IM2]
 gi|18161384|gb|AAL64671.1| signal recognition particle protein (docking protein), probable
           [Pyrobaculum aerophilum str. IM2]
          Length = 305

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 71/202 (35%), Positives = 113/202 (55%), Gaps = 6/202 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           RP V++ +G NG GKTT + KL+  + + G +V+ AA DTFR+ A +QL+    R     
Sbjct: 109 RPVVVMFLGPNGYGKTTTLAKLAFNLQEMGFRVVAAAADTFRAGAREQLEEHGKRVGFKV 168

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +    G+D A++AY+A + A+A+    ++IDTAGR+H ++ LM  + K+ RV +      
Sbjct: 169 ISGPYGADPASVAYDALQHAKARGYHFVLIDTAGRMHTDANLMEELRKIQRVTE------ 222

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           PH  + V DA  G  AL   + +       G+I TK+D   +GG ++  +   K PVYFL
Sbjct: 223 PHYSIFVFDAQLGNEALEIAKYYSKYVKIDGMIATKVDAYPKGGSILTFIYVLKRPVYFL 282

Query: 290 GVGEGINDLEPFVAKDFSAVIT 311
           GVG+   DL  F  +++   + 
Sbjct: 283 GVGQTYRDLVKFSKQEYIGQLL 304


>gi|77627979|ref|NP_001029322.1| signal recognition particle receptor subunit alpha [Rattus
           norvegicus]
 gi|76779803|gb|AAI05783.1| Signal recognition particle receptor ('docking protein') [Rattus
           norvegicus]
          Length = 636

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 312 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 371

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 372 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 431

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-------------SADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R                      
Sbjct: 432 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKG 491

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 492 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 545

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 546 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 605

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 606 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 634


>gi|312071485|ref|XP_003138630.1| srpr protein [Loa loa]
 gi|307766205|gb|EFO25439.1| srpr protein [Loa loa]
          Length = 662

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 83/323 (25%), Positives = 142/323 (43%), Gaps = 39/323 (12%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
                +       ++ +++L       V +++ + LI  ++    A+K+ + +  K   K
Sbjct: 345 EKGHGRWFSAFRSLVGNKKLTVEDIKPVLDKMRETLIAKNVAAEPAEKLCQSVEVKLEGK 404

Query: 78  DV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            V +  RV   V E + + L+ L  P          F      RP++I+  GVNGVGK+T
Sbjct: 405 VVGTFSRVASIVKESVREALVQLLTPRRRVDILRDIFEAKREKRPYIIVFCGVNGVGKST 464

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------ADFVCSEIGSDAAA 180
            + K++  +++ G KV++AA DTFR+ A++QL+      +              G D A 
Sbjct: 465 NLAKITFWLNENGHKVLIAAADTFRAGAVEQLRTHTMHLNALHPNSVQLYEQGYGKDPAG 524

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           L   A   A  +  DV+++DTAGR+ +N  LM  + K+I++ K      P  VL V +A 
Sbjct: 525 LTAAAISIAMERGTDVVMVDTAGRMQDNEPLMRSLAKLIQLNK------PDLVLFVGEAL 578

Query: 241 TGQNAL------RQVEMFHAVAG-----TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYF 288
            G  A+       Q    HA  G       G+++TK D    + G  I +      P+ F
Sbjct: 579 VGNEAVDQLVKFNQALADHAALGVEGRLIDGIVLTKFDTVDDKVGAAISMTYITGQPIVF 638

Query: 289 LGVGEGINDLEPFVAKDFSAVIT 311
           +G G+   DL+          + 
Sbjct: 639 VGTGQTYKDLKSLDINTVVHSLL 661


>gi|149027816|gb|EDL83276.1| signal recognition particle receptor ('docking protein') [Rattus
           norvegicus]
          Length = 622

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 298 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 357

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 358 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 417

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-------------SADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R                      
Sbjct: 418 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKG 477

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 478 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 531

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 532 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 591

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 592 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 620


>gi|332208934|ref|XP_003253565.1| PREDICTED: signal recognition particle receptor subunit alpha-like,
           partial [Nomascus leucogenys]
          Length = 608

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 284 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 343

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 344 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 403

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 404 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKG 463

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 464 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 517

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 518 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 577

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 578 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 606


>gi|4140392|gb|AAD11975.1| signal receptor alpha subunit [Giardia intestinalis]
          Length = 571

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 77/313 (24%), Positives = 143/313 (45%), Gaps = 35/313 (11%)

Query: 29  KEGITDIISSRR-LD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV---- 79
           +E +  + ++++ L     + +   L   LI  ++   VA ++++ +      + V    
Sbjct: 264 REAVFGLFNNKKELTSNDVEKLLSSLRQALINQNVASDVADELLKGVSASLEGEKVGLFS 323

Query: 80  ------------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
                       S+++++      + K ++   +        RP+VI + GVNGVGKTT 
Sbjct: 324 RTKSVVIQALKDSIRKIVQFEDRFLMKRILASKEERAAGQRSRPYVICMTGVNGVGKTTS 383

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL     + G + ++ A D+FRS A++QL+   +R  A       G +A+A+A    K
Sbjct: 384 IAKLLYIFKNNGSRSLVCACDSFRSGAVEQLQEHCNRLGATLYSQGYGKNASAIAKYGIK 443

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A++   D+ +IDT GR +NN  LM  +G ++        +AP  VL V +A TG   + 
Sbjct: 444 EAESLNYDICLIDTTGRQYNNGPLMQALGALV------LENAPDVVLFVGEALTGNEGVE 497

Query: 248 QVEMFHAVA-------GTTGLIMTKMDGTA-RGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           Q++ F           G  G+I+TK D    + G  + +     +P+ ++G G+   D  
Sbjct: 498 QLKQFDCALKSYTNSRGIDGIILTKFDTCGDKVGAALNLCFVCDLPILYVGTGQSYPDFG 557

Query: 300 PFVAKDFSAVITG 312
                  + +I G
Sbjct: 558 VLDPSHIADLIVG 570


>gi|205355551|ref|ZP_03222322.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346785|gb|EDZ33417.1| signal recognition particle protein [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 346

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 69/202 (34%), Positives = 106/202 (52%), Gaps = 6/202 (2%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           + G+ G GKTT   KL+  +     KV++AA D  R AA++QL+   +    +    E  
Sbjct: 1   MAGLQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENE 60

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D   +A EA K+A++  VDVL++DTAGRL  +  LM  +  +  VL       P  +  
Sbjct: 61  KDPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMDELRAVKDVLN------PDEIFY 114

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V DA +GQ+ ++    F+ V G +G+I++K D   +GG  + I     IP+ F+GVGE +
Sbjct: 115 VADAMSGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKV 174

Query: 296 NDLEPFVAKDFSAVITGCLDYG 317
            DLE F+     + I G  D  
Sbjct: 175 ADLEVFIPDRIVSRIMGEGDLA 196


>gi|317035358|ref|XP_001396706.2| signal sequence receptor alpha subunit [Aspergillus niger CBS
           513.88]
          Length = 646

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 146/310 (47%), Gaps = 42/310 (13%)

Query: 26  LKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVE----ELLTKRYAK 77
             +   + +I+  + L +   E+    +ED L+R ++    A ++ E    EL+ K+   
Sbjct: 330 NAIGGLLRNIVGGKTLTEADLEKPLKTMEDHLLRKNVAREAAVRLCEGVQRELVGKKTGN 389

Query: 78  DVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGK 124
             SV   L    E  + K+L P            ++ P +   S RP+VI +VGVNGVGK
Sbjct: 390 FQSVDAALRSAMESSLRKILTPTSSLDLLREIDAVTSPTSKQQSPRPYVISIVGVNGVGK 449

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEI 174
           +T +GK+   +     +V++AA DTFRS A++QL++ A               +      
Sbjct: 450 STNLGKICYFLLQNKYRVLIAACDTFRSGAVEQLRVHARNLRELSARENVGEVELYEKGY 509

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A +A +   A   DV++IDTAGR HN+  LM+ + K  +         P  + 
Sbjct: 510 GKDAANVAKDAVEYGAANHFDVVLIDTAGRRHNDQRLMSSLEKFAKFAN------PDKIF 563

Query: 235 QVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFL 289
            V +A  G +++ Q   F+   G      G I++K D      G L+ +V    IP+ FL
Sbjct: 564 MVGEALVGTDSVMQARNFNQAFGTGRNLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFL 623

Query: 290 GVGEGINDLE 299
           GVG+   DL 
Sbjct: 624 GVGQHYGDLR 633


>gi|328787996|ref|XP_395013.3| PREDICTED: signal recognition particle receptor subunit alpha
           homolog isoform 1 [Apis mellifera]
          Length = 614

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 82/333 (24%), Positives = 148/333 (44%), Gaps = 45/333 (13%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTK 73
                  +  +      ++ ++ L       V ++L+D LI  ++   +A+K+ + +  K
Sbjct: 287 KSQMQKKTNSMFSMFKSLVGNKCLKHEDMAPVLDKLKDHLISKNVAADIAKKLCDSVGVK 346

Query: 74  RYAK-----DVSVQRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGV 122
              K     D     V   +++ + ++L P      L        +HRP+V+   GVNGV
Sbjct: 347 LEGKILGTFDSVASTVKATLTDALVQILSPKRRVDILRDAMEAKNNHRPYVMTFCGVNGV 406

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADF 169
           GK+T + K+   + +   +V++AA DTFR+ A++QL+      +                
Sbjct: 407 GKSTNLAKICFWLIENNFRVLIAACDTFRAGAVEQLRTHMRHLNALHPPEKHGNQSMVQL 466

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                G DAA +A EA + A+  K+D++++DTAGR+ +N  LM  + K+I+V      + 
Sbjct: 467 YEKGYGKDAAGIAMEAIRFAKDSKIDIVLVDTAGRMQDNEPLMRALAKLIKV------NE 520

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPI 278
           P  VL V +A  G  A+ Q+  F+                G+++TK D    + G  I +
Sbjct: 521 PDVVLFVGEALVGNEAVDQLVKFNQALADHSQSSNPHIIDGIVLTKFDTIDDKVGAAISM 580

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                 P+ F+G G+   DL+   AK     + 
Sbjct: 581 TYITGQPIVFVGTGQTYTDLKSLNAKAVVHALM 613


>gi|327282058|ref|XP_003225761.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           [Anolis carolinensis]
          Length = 649

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 86/318 (27%), Positives = 145/318 (45%), Gaps = 45/318 (14%)

Query: 33  TDIISSRRL----DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY-D 87
             ++ S+ L     D V E+++D LI  ++   +A ++ E +  K   K +     +   
Sbjct: 336 KGLVGSKSLAKEDMDPVLEKMKDHLIAKNVAAEIAVQLCESVAKKLEGKVMGTFTTVTST 395

Query: 88  VSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           V + + + L+ + +P           +     RP+VI   GVNGVGK+T + K+S  + +
Sbjct: 396 VKQALQESLVQILQPQRRVDVLRDVMDAQRHRRPYVITFCGVNGVGKSTNLAKISFWLIE 455

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAAALAYE 184
            G  V++AA DTFR+ A++QL+    R +                     G DAA +A E
Sbjct: 456 NGFSVLIAACDTFRAGAVEQLRTHTRRLNALHPPENHSGRVMVQLYEKGYGKDAAGIAME 515

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G  
Sbjct: 516 AILYARNQGFDVVLVDTAGRMQDNAPLMTALAKLIAV------NTPDLVLFVGEALVGNE 569

Query: 245 ALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGE 293
           A+ Q+  F+                G+++TK D    + G  I +      P+ F+G G+
Sbjct: 570 AVDQLVKFNKALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQ 629

Query: 294 GINDLEPFVAKDFSAVIT 311
              DL    AK   A + 
Sbjct: 630 TYCDLRSLNAKAVVAALM 647


>gi|194382530|dbj|BAG64435.1| unnamed protein product [Homo sapiens]
          Length = 610

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 286 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 345

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 346 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 405

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 406 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKG 465

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 466 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 519

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 520 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 579

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 580 SKPIVFVGTGQTYCDLRSLNAKAVLAALM 608


>gi|15214760|gb|AAH12512.1| Srpr protein [Mus musculus]
          Length = 359

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 35  KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 94

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 95  VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 154

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-------------SADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R                      
Sbjct: 155 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKG 214

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 215 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 268

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 269 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 328

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 329 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 357


>gi|116515177|ref|YP_802806.1| hypothetical protein BCc_245 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257031|gb|ABJ90713.1| protein component of signal recognition particle (SRP) [Buchnera
           aphidicola str. Cc (Cinara cedri)]
          Length = 448

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 151/304 (49%), Gaps = 21/304 (6%)

Query: 26  LKLKEGITDIISS--------RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             L + IT+I           ++       +++   + +D+ + V +  ++++  K   K
Sbjct: 3   NNLTKKITNIFDKISYKSYLEKKTIKKTLNKIKLAFLDADVALNVIKLFLKKIKKKIKKK 62

Query: 78  DV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            +       Q ++  + + + K+L      FN+ F+   ++  V+G  GVGKTT   KL+
Sbjct: 63  KINKNLSPSQNLINIILKELIKILGKNHYSFNFLFNQ-LNICTVIGQQGVGKTTSTAKLA 121

Query: 133 KKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
             ++    K +L  + D +R AAI QLK   ++T A+F  S +      +   A K+A+ 
Sbjct: 122 YLLTKKYKKKVLVVSTDIYRPAAIVQLKRLIEKTKANFFPSVVTQKIMTIIKSAIKEAKR 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           KK DVL+IDTAGRLHNNS  +  + K+    +      P+  L ++D+  GQ+++  +  
Sbjct: 182 KKYDVLLIDTAGRLHNNSKKIQELKKIQEYTQ------PNETLLIIDSMIGQDSINLINK 235

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F+     +G+I+TK+D   RGG  + I    K P+ ++G GE I DL+ F  +  +  I 
Sbjct: 236 FNKEFNLSGIILTKLDSDTRGGVALSIRTLTKKPIKYIGTGEKIYDLQIFHPERIAKRIL 295

Query: 312 GCLD 315
           G  D
Sbjct: 296 GMGD 299


>gi|73954897|ref|XP_546411.2| PREDICTED: similar to Signal recognition particle receptor alpha
           subunit (SR-alpha) (Docking protein alpha) (DP-alpha)
           [Canis familiaris]
          Length = 612

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 288 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 347

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 348 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKST 407

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 408 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHAGRTMVQLFEKG 467

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 468 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 521

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 522 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 581

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 582 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 610


>gi|18256022|gb|AAH21839.1| Signal recognition particle receptor ('docking protein') [Mus
           musculus]
          Length = 636

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 312 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 371

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 372 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 431

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-------------SADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R                      
Sbjct: 432 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKG 491

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 492 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 545

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 546 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 605

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 606 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 634


>gi|150864210|ref|XP_001382942.2| GTP binding signal recognition particle receptor [Scheffersomyces
           stipitis CBS 6054]
 gi|149385466|gb|ABN64913.2| GTP binding signal recognition particle receptor [Scheffersomyces
           stipitis CBS 6054]
          Length = 545

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/310 (27%), Positives = 147/310 (47%), Gaps = 32/310 (10%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR-YAKDVSVQRVLY 86
               IT  +      + V ++  D LI  +I    A+ I++++  K    ++V++     
Sbjct: 241 FFSKITSFLGGSIDIEDVSKKFNDQLISKNIAPNTAKIIIDKIRDKLGNQRNVTLALYKQ 300

Query: 87  DVSELIHKMLMP-LSKPFNWDFSH-----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            ++E + K+L P +S    +D        RP+VI VVGVNGVGK+T + KL+       L
Sbjct: 301 TLTEELTKILTPNVSTDLLYDIKRNSTNPRPYVISVVGVNGVGKSTNLAKLAYWFLQNNL 360

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTS------------ADFVCSEIGSDAAAL--AYEAF 186
            V++ A DTFRS A++QLK+  +                D      GS    +  A  A 
Sbjct: 361 NVLICACDTFRSGAVEQLKVHVNNLQRLNSQSSNGENKIDIFEKGYGSGDHVVTTAKMAI 420

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A ++K D+++IDTAGR H+N+ LMA + K        D   P  ++ V +A  G +++
Sbjct: 421 QHAASEKFDIVLIDTAGRTHSNTKLMAPLKKF------GDAANPDKIIMVGEALVGTDSV 474

Query: 247 RQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
            Q   F+   G        I++K+D      G +I +V+  K+P+ F+G G+   D++  
Sbjct: 475 EQAINFNNAFGNKRSLDFFIISKVDTVGDLVGTMINMVMATKVPILFVGTGQTYTDIKRL 534

Query: 302 VAKDFSAVIT 311
             K    ++ 
Sbjct: 535 SVKRVVDMLM 544


>gi|27229036|ref|NP_080406.1| signal recognition particle receptor subunit alpha [Mus musculus]
 gi|47117310|sp|Q9DBG7|SRPR_MOUSE RecName: Full=Signal recognition particle receptor subunit alpha;
           Short=SR-alpha; AltName: Full=Docking protein alpha;
           Short=DP-alpha
 gi|12836553|dbj|BAB23706.1| unnamed protein product [Mus musculus]
 gi|26332409|dbj|BAC29922.1| unnamed protein product [Mus musculus]
          Length = 636

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 312 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 371

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 372 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 431

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-------------SADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R                      
Sbjct: 432 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKG 491

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 492 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 545

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 546 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 605

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 606 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 634


>gi|148693439|gb|EDL25386.1| mCG7475 [Mus musculus]
          Length = 624

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 300 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 359

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 360 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 419

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-------------SADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R                      
Sbjct: 420 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKG 479

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 480 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 533

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 534 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 593

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 594 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 622


>gi|119467570|ref|XP_001257591.1| signal sequence receptor alpha subunit, putative [Neosartorya
           fischeri NRRL 181]
 gi|119405743|gb|EAW15694.1| signal sequence receptor alpha subunit, putative [Neosartorya
           fischeri NRRL 181]
          Length = 649

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 146/310 (47%), Gaps = 42/310 (13%)

Query: 26  LKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVE----ELLTKRYAK 77
             L     +I+  + L +   E+    +ED L++ ++    A ++ E    EL+ K+   
Sbjct: 333 NALGGFFRNIVGGKVLTEADLEKPLKAMEDHLLKKNVAREAAVRLCEGVQRELVGKKTGN 392

Query: 78  DVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGK 124
             SV   L    E  + K+L P            +  P +   + RP+VI +VGVNGVGK
Sbjct: 393 FQSVDAALRSAMESSLRKILTPTSSLDLLREIDAVRSPTSKGQAPRPYVISIVGVNGVGK 452

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----------ADFVCSEI 174
           +T +GK+   +     +V++AA DTFRS A++QL++ A               +      
Sbjct: 453 STNLGKICYFLLQNNYRVLIAACDTFRSGAVEQLRVHARNLKELSARENAGEVELYEKGY 512

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A +A +   A + DV++IDTAGR HN+  LM+ + K  +  K      P  + 
Sbjct: 513 GKDAANVAKDAVEYGAANQFDVVLIDTAGRRHNDQRLMSSLEKFAKFAK------PDKIF 566

Query: 235 QVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFL 289
            V +A  G +++ Q   F+   G      G I++K D      G L+ +V    IP+ FL
Sbjct: 567 MVGEALVGTDSVMQARNFNQAFGTGRNLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFL 626

Query: 290 GVGEGINDLE 299
           GVG+   DL 
Sbjct: 627 GVGQHYGDLR 636


>gi|67624007|ref|XP_668286.1| signal recognition particle receptor alpha subunit [Cryptosporidium
           hominis TU502]
 gi|54659474|gb|EAL38049.1| signal recognition particle receptor alpha subunit [Cryptosporidium
           hominis]
          Length = 548

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 154/334 (46%), Gaps = 30/334 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSD 57
           +  +V+ + +  I +  K  +  S  L      + ++  L   + E+    L+  L+  +
Sbjct: 220 NEDEVSDDEMEEINQEKKAVSYWSNFLSTQFGILNNNTTLTAEMVEKPLQKLKSQLVEKN 279

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYD------VSELIHKMLMP------LSKPFNW 105
           +   +AQ I++ +                D      + + I K+L P      LS     
Sbjct: 280 VASEIAQDIIDSVSNALVGVKTQGGFSKLDTILLNSLRDAITKILSPKKPTDVLSDALKA 339

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADR 164
               + + I+ +GVNGVGK+T + K+   + + G L V++ A DTFR+ AI+QLK  A+ 
Sbjct: 340 KQHSQVYSIVFLGVNGVGKSTNLAKVCYLLKNKGNLNVLIVACDTFRAGAIEQLKTHANC 399

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                     G DAA +A +A   A+ K  DV++IDTAGR+ +N  LM  + K+++V   
Sbjct: 400 LGVQLYEKGYGKDAAMVAKDAISYAKDKGFDVVLIDTAGRMQDNVPLMKSLAKLVQV--- 456

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVA------GTTGLIMTKMDG-TARGGGLIP 277
              + P+ VL V +A  G +A+ Q+++F+            G+I+TK D    + G  + 
Sbjct: 457 ---NNPNLVLFVGEALVGNDAVHQLQVFNKYLVEFGDRPIDGIILTKFDTVDDKVGAALS 513

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +V T   PV F+G G+   +L+          + 
Sbjct: 514 MVYTTGQPVVFVGTGQKYFNLKTLSVPSVVNALL 547


>gi|213416644|ref|ZP_03349788.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 341

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 2/223 (0%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 114 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 173

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 174 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 232

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W  R +   +    G+D+A++ 
Sbjct: 233 GKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 292

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           ++A + A+A+ VDVLI DTAGRL N S LM  + K     ++ 
Sbjct: 293 FDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKNRSRHEKA 335


>gi|134082225|emb|CAL00980.1| unnamed protein product [Aspergillus niger]
          Length = 585

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 146/310 (47%), Gaps = 42/310 (13%)

Query: 26  LKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVE----ELLTKRYAK 77
             +   + +I+  + L +   E+    +ED L+R ++    A ++ E    EL+ K+   
Sbjct: 269 NAIGGLLRNIVGGKTLTEADLEKPLKTMEDHLLRKNVAREAAVRLCEGVQRELVGKKTGN 328

Query: 78  DVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGK 124
             SV   L    E  + K+L P            ++ P +   S RP+VI +VGVNGVGK
Sbjct: 329 FQSVDAALRSAMESSLRKILTPTSSLDLLREIDAVTSPTSKQQSPRPYVISIVGVNGVGK 388

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEI 174
           +T +GK+   +     +V++AA DTFRS A++QL++ A               +      
Sbjct: 389 STNLGKICYFLLQNKYRVLIAACDTFRSGAVEQLRVHARNLRELSARENVGEVELYEKGY 448

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A +A +   A   DV++IDTAGR HN+  LM+ + K  +         P  + 
Sbjct: 449 GKDAANVAKDAVEYGAANHFDVVLIDTAGRRHNDQRLMSSLEKFAKFAN------PDKIF 502

Query: 235 QVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFL 289
            V +A  G +++ Q   F+   G      G I++K D      G L+ +V    IP+ FL
Sbjct: 503 MVGEALVGTDSVMQARNFNQAFGTGRNLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFL 562

Query: 290 GVGEGINDLE 299
           GVG+   DL 
Sbjct: 563 GVGQHYGDLR 572


>gi|322712148|gb|EFZ03721.1| signal sequence receptor alpha subunit [Metarhizium anisopliae
           ARSEF 23]
          Length = 655

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 90/331 (27%), Positives = 144/331 (43%), Gaps = 43/331 (12%)

Query: 18  TKGFASTS-LKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLT 72
             G   T    L     +++  + L     ++    +E+ L+R ++    A ++ E +  
Sbjct: 327 KSGLLGTGVNALSGMFRNVVGGKTLTKEDLDKAMKGMEEHLLRKNVAREAAVRLCEGVEK 386

Query: 73  KRYAKDV----SVQRVLYDVSEL-IHKMLMPLSK-------------PFNWDFSHRPHVI 114
           +          S+   +    E  + KML P S              P       RP+VI
Sbjct: 387 ELVGVKTGNFESISSKIQTAMESSLTKMLTPTSSLDLLREIDSITAPPATSLRKARPYVI 446

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT--------- 165
            +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++QL +              
Sbjct: 447 SIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQLAVHVRNLKELTAREGG 506

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             +      G DAA +A +A   A  +  DV++IDTAGR HN+  LM+ + K  +     
Sbjct: 507 QVELYQKGYGKDAATVAKDAVSHAAQEGFDVVLIDTAGRRHNDQRLMSSLEKFAKF---- 562

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVV 280
               P  +L V +A  G +++ Q   F+A  G      G I++K D      G L+ +V 
Sbjct: 563 --AQPDKILMVGEALVGTDSVAQARNFNAAFGSVRTLDGFIISKCDTVGDMVGTLVSLVH 620

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              +PV F+GVG+  +DL  F  K     + 
Sbjct: 621 ATNVPVLFVGVGQHYSDLRNFSVKWAVEKLL 651


>gi|317148977|ref|XP_001823040.2| signal sequence receptor alpha subunit [Aspergillus oryzae RIB40]
          Length = 646

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 42/310 (13%)

Query: 26  LKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVE----ELLTKRYAK 77
             +     +I+  + L +   E+    +ED L++ ++    A ++ +    EL+ K+   
Sbjct: 330 NAIGGLFRNIVGGKVLTESDLEKPLKAMEDHLLKKNVAREAAVRLCDGVQRELVGKKTGN 389

Query: 78  DVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGK 124
             SV   L    E  + K+L P            ++ P +   S RP+VI +VGVNGVGK
Sbjct: 390 FQSVDAALRQAMESSLRKILTPTSSLDLLREIDTVTSPTSKQQSPRPYVISIVGVNGVGK 449

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEI 174
           +T +GK+   +     +V++AA DTFRS A++QL++ A               +      
Sbjct: 450 STNLGKICYFLLQNNYRVLIAACDTFRSGAVEQLRVHARNLKELSARENVGQVELYEKGY 509

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A +A +   A K DV++IDTAGR HN+  LM+ + K  +  K      P  + 
Sbjct: 510 GKDAANVAKDAVEYGAANKFDVVLIDTAGRRHNDQRLMSSLEKFGKFAK------PDKIF 563

Query: 235 QVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFL 289
            V +A  G +++ Q   F+   G      G I++K D      G L+ +V    IP+ FL
Sbjct: 564 MVGEALVGTDSVMQARNFNQAFGTGRNLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFL 623

Query: 290 GVGEGINDLE 299
           GVG+   DL 
Sbjct: 624 GVGQHYGDLR 633


>gi|134891|sp|P06625|SRPR_CANFA RecName: Full=Signal recognition particle receptor subunit alpha;
           Short=SR-alpha; AltName: Full=Docking protein alpha;
           Short=DP-alpha
 gi|997|emb|CAA26945.1| signal recognition particle receptor [Canis sp.]
 gi|224778|prf||1112224A signal recognition particle receptor
          Length = 638

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 146/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 314 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 373

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 374 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKST 433

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++ ++    R S                    
Sbjct: 434 NLAKISFWLLENGFSVLIAACDTFRAGAVEHVRTHTRRLSALHPPEKHAGPTMVQLFEKG 493

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 494 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 547

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 548 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 607

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 608 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 636


>gi|238494260|ref|XP_002378366.1| signal sequence receptor alpha subunit, putative [Aspergillus
           flavus NRRL3357]
 gi|220695016|gb|EED51359.1| signal sequence receptor alpha subunit, putative [Aspergillus
           flavus NRRL3357]
          Length = 646

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 42/310 (13%)

Query: 26  LKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVE----ELLTKRYAK 77
             +     +I+  + L +   E+    +ED L++ ++    A ++ +    EL+ K+   
Sbjct: 330 NAIGGLFRNIVGGKVLTESDLEKPLKAMEDHLLKKNVAREAAVRLCDGVQRELVGKKTGN 389

Query: 78  DVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGK 124
             SV   L    E  + K+L P            ++ P +   S RP+VI +VGVNGVGK
Sbjct: 390 FQSVDAALRQAMESSLRKILTPTSSLDLLREIDTVTSPTSKQQSPRPYVISIVGVNGVGK 449

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEI 174
           +T +GK+   +     +V++AA DTFRS A++QL++ A               +      
Sbjct: 450 STNLGKICYFLLQNNYRVLIAACDTFRSGAVEQLRVHARNLKELSARENVGQVELYEKGY 509

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A +A +   A K DV++IDTAGR HN+  LM+ + K  +  K      P  + 
Sbjct: 510 GKDAANVAKDAVEYGAANKFDVVLIDTAGRRHNDQRLMSSLEKFGKFAK------PDKIF 563

Query: 235 QVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFL 289
            V +A  G +++ Q   F+   G      G I++K D      G L+ +V    IP+ FL
Sbjct: 564 MVGEALVGTDSVMQARNFNQAFGTGRNLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFL 623

Query: 290 GVGEGINDLE 299
           GVG+   DL 
Sbjct: 624 GVGQHYGDLR 633


>gi|66361764|ref|XP_627404.1| Srp101p GTpase.  signal recognition particle receptor alpha subunit
           [Cryptosporidium parvum Iowa II]
 gi|46228777|gb|EAK89647.1| Srp101p GTpase, signal recognition particle receptor alpha subunit
           [Cryptosporidium parvum Iowa II]
          Length = 548

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 154/334 (46%), Gaps = 30/334 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSD 57
           +  +V+ + +  I +  K  +  S  L      + ++  L   + E+    L+  L+  +
Sbjct: 220 NEDEVSDDEIEEINQEKKAVSYWSNFLSSQFGILNNNTTLTAEMVEKPLQKLKSQLVEKN 279

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYD------VSELIHKMLMP------LSKPFNW 105
           +   +AQ I++ +                D      + + I K+L P      LS     
Sbjct: 280 VASEIAQDIIDSVSNALVGVKTQGGFSKLDTILLNSLRDAITKILSPKKPTDVLSDALKA 339

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADR 164
               + + I+ +GVNGVGK+T + K+   + + G L V++ A DTFR+ AI+QLK  A+ 
Sbjct: 340 KQHSQVYSIVFLGVNGVGKSTNLAKVCYLLKNKGNLNVLIVACDTFRAGAIEQLKTHANC 399

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                     G DAA +A +A   A+ K  DV++IDTAGR+ +N  LM  + K+++V   
Sbjct: 400 LGVQLYEKGYGKDAAMVAKDAISYAKDKGFDVVLIDTAGRMQDNVPLMKSLAKLVQV--- 456

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVA------GTTGLIMTKMDG-TARGGGLIP 277
              + P+ VL V +A  G +A+ Q+++F+            G+I+TK D    + G  + 
Sbjct: 457 ---NNPNLVLFVGEALVGNDAVHQLQVFNKYLVEFGDRPIDGIILTKFDTVDDKVGAALS 513

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +V T   PV F+G G+   +L+          + 
Sbjct: 514 MVYTTGQPVVFVGTGQKYFNLKTLSVPSVVNALL 547


>gi|260948082|ref|XP_002618338.1| hypothetical protein CLUG_01797 [Clavispora lusitaniae ATCC 42720]
 gi|238848210|gb|EEQ37674.1| hypothetical protein CLUG_01797 [Clavispora lusitaniae ATCC 42720]
          Length = 529

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 143/314 (45%), Gaps = 31/314 (9%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
                    +T    S    D V ++  D LI  +I    A+ I E++ T+  +K V+V 
Sbjct: 221 KPKSGFLSKVTSYFGSTAPIDEVSKKFNDQLISKNIAPPTAKAITEKIKTRLGSKTVTVN 280

Query: 83  RVLYDVSELIHKMLMP-LSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKM 135
                ++E + K+L P +S    ++         RP+VI VVGVNGVGK+T + KL+  +
Sbjct: 281 AFKQALTEELTKILTPNVSTDLLYEIKKSSAAKKRPYVISVVGVNGVGKSTNLAKLAYWL 340

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRT-----------SADFVCSEIGSDAAAL--A 182
               L V++ A DTFRS A++QLK+                  D      G     +  A
Sbjct: 341 LQNNLNVLICACDTFRSGAVEQLKVHVKNLKRLNASNDTECKIDLFEKGYGGGDHVVKTA 400

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             A + A  +  D+++IDTAGR H+N+ L   +  + +     DP     ++ V +A  G
Sbjct: 401 KSAIQHATTEGYDIVLIDTAGRTHSNAKL---MAPLKKFGDAADP---DKIIMVGEALVG 454

Query: 243 QNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGIND 297
            +++ Q   F+   G        I++K+D      G +I +V+   +P+ F+G G+   D
Sbjct: 455 TDSVEQAINFNNAFGNKRNLDFFIISKVDTVGDLVGAMINMVMATNVPILFVGTGQTYTD 514

Query: 298 LEPFVAKDFSAVIT 311
           ++    K    ++T
Sbjct: 515 IKRLSVKRVVDMLT 528


>gi|293392761|ref|ZP_06637079.1| signal recognition particle protein [Serratia odorifera DSM 4582]
 gi|291424620|gb|EFE97831.1| signal recognition particle protein [Serratia odorifera DSM 4582]
          Length = 322

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/174 (36%), Positives = 94/174 (54%), Gaps = 6/174 (3%)

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           +++ + D +R AAI QL+  A+    DF  S+       +   A +QA+ K  DVLI+DT
Sbjct: 1   MLVVSADVYRPAAIKQLETLAEGVGIDFFPSDAKDKPIDIVNRALQQAKLKFYDVLIVDT 60

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AGRLH +  +M  I ++   +K      P   L V+DA TGQ+A    + F+     TG+
Sbjct: 61  AGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAKAFNEALPLTGV 114

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ++TK+DG ARGG  + I      P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 115 VLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRVASRILGMGD 168


>gi|308159913|gb|EFO62429.1| Signal recognition particle receptor [Giardia lamblia P15]
          Length = 571

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/313 (24%), Positives = 144/313 (46%), Gaps = 35/313 (11%)

Query: 29  KEGITDIISSRR-LD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV---- 79
           KE +  + ++++ L     + +   L   LI  ++   VA ++++ +      + +    
Sbjct: 264 KETVFGLFNNKKELTSNDIEKLLSSLRQALINQNVASDVADELLKGVSANLEGEKIGLFS 323

Query: 80  ------------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
                       S+++++      + K ++   +        RP+VI + GVNGVGKTT 
Sbjct: 324 RTKSVVTQALKDSIKKIVQFEDRFLMKRILASKEERAAGQRSRPYVICMTGVNGVGKTTS 383

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           I KL     + GL+ ++ A D+FRS A++QL+   +R  A       G +A+A+A    K
Sbjct: 384 IAKLLYIFKNNGLRSLVCACDSFRSGAVEQLQEHCNRLGATLYSQGYGKNASAIAKYGIK 443

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +A++   D+ +IDT GR +NN  LM  +G ++        + P  VL V +A TG   + 
Sbjct: 444 EAESLNYDICLIDTTGRQYNNGPLMQALGALV------LENTPDVVLFVGEALTGNEGIE 497

Query: 248 QVEMFHAVA-------GTTGLIMTKMDGTA-RGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
           Q++ F           G  G+I+TK D    + G  + +     +P+ ++G+G+   D  
Sbjct: 498 QLKQFDCALKSYTNSRGIDGIILTKFDTCGDKVGAALNLCFVCDLPILYVGIGQSYPDFG 557

Query: 300 PFVAKDFSAVITG 312
                  + +I G
Sbjct: 558 VLDPSHIADLIVG 570


>gi|70984356|ref|XP_747692.1| signal sequence receptor alpha subunit [Aspergillus fumigatus
           Af293]
 gi|66845319|gb|EAL85654.1| signal sequence receptor alpha subunit, putative [Aspergillus
           fumigatus Af293]
 gi|159122478|gb|EDP47599.1| signal sequence receptor alpha subunit, putative [Aspergillus
           fumigatus A1163]
          Length = 649

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 42/310 (13%)

Query: 26  LKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVE----ELLTKRYAK 77
             L     +I+  + L +   E+    +ED L++ ++    A ++ +    EL+ K+   
Sbjct: 333 NALGGFFRNIVGGKVLTEADLEKPLKAMEDHLLKKNVAREAAVRLCQGVQRELVGKKTGN 392

Query: 78  DVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGK 124
             SV   L    E  + K+L P            +  P +   + RP+VI +VGVNGVGK
Sbjct: 393 FQSVDAALRSAMESSLRKILTPTSSLDLLREIDAVRSPTSKGQAPRPYVISIVGVNGVGK 452

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----------ADFVCSEI 174
           +T +GK+   +     +V++AA DTFRS A++QL++ A               +      
Sbjct: 453 STNLGKICYFLLQNNYRVLIAACDTFRSGAVEQLRVHARNLKELSTRENAGEVELYEKGY 512

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A +A +   A   DV++IDTAGR HN+  LM+ + K  +  K      P  + 
Sbjct: 513 GKDAANVAKDAVEYGAANHFDVVLIDTAGRRHNDQRLMSSLEKFAKFAK------PDKIF 566

Query: 235 QVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFL 289
            V +A  G +++ Q   F+   G      G I++K D      G L+ +V    IP+ FL
Sbjct: 567 MVGEALVGTDSVMQARNFNQAFGTGRNLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFL 626

Query: 290 GVGEGINDLE 299
           GVG+   DL 
Sbjct: 627 GVGQHYGDLR 636


>gi|66818279|ref|XP_642799.1| signal recognition particle receptor alpha subunit [Dictyostelium
           discoideum AX4]
 gi|74856964|sp|Q54ZR7|SRPR_DICDI RecName: Full=Signal recognition particle receptor subunit alpha;
           Short=SR-alpha; Short=Signal recognition particle
           receptor; AltName: Full=Docking protein alpha;
           Short=DP-alpha
 gi|60470903|gb|EAL68875.1| signal recognition particle receptor alpha subunit [Dictyostelium
           discoideum AX4]
          Length = 615

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 140/304 (46%), Gaps = 33/304 (10%)

Query: 35  IISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-- 88
           +  +R +D    + +  + +  L + ++   VA KIV+ + T    K ++  + +  V  
Sbjct: 317 LTGNRVIDKQDLEPILADFKLHLTKKNVAPDVADKIVQSIGTGLEGKKLATFQGVTSVVK 376

Query: 89  ---SELIHKMLMP-----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
               + I ++L P     + +        RP+ I+  GVNGVGK+T + K+   ++  G 
Sbjct: 377 QQMEDTITRILTPKRNIDILREVQAVKGKRPYSIVFSGVNGVGKSTNLAKVCYWLTANGY 436

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           K MLAA DTFRS AI+QLK  ADR +          DAA++A +A   A+    DV++ID
Sbjct: 437 KCMLAACDTFRSGAIEQLKTHADRLNVHLFERGYSKDAASVAQDAIAFAKDTGYDVVLID 496

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG--- 257
           T GR+ NN  L      M  + K ++ +    VL V +A  G + + Q+  F        
Sbjct: 497 TTGRMQNNEPL------MKALSKLVNQNNVDLVLFVGEALVGNDGVDQLTKFDKSLSLLA 550

Query: 258 ---------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                      G+I+TK D    + G  I +V +   P+ FLG G+   DL+    K   
Sbjct: 551 NTTQTHIRTIDGIILTKFDTIDDKVGAAISMVYSTGHPILFLGTGQNYTDLKRMNIKSVV 610

Query: 308 AVIT 311
             + 
Sbjct: 611 KSLL 614


>gi|48146167|emb|CAG33306.1| SRPR [Homo sapiens]
          Length = 638

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 314 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLWESVANKLEGK 373

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 374 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 433

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 434 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKG 493

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 494 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 547

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 548 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYIT 607

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL    AK   A + 
Sbjct: 608 SKPIVFVGTGQTYCDLRSLNAKAVVAALM 636


>gi|47214780|emb|CAG00952.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 648

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 141/319 (44%), Gaps = 45/319 (14%)

Query: 32  ITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-Y 86
           +  ++ S+ L     + V ++++D LI  ++   ++ ++ + +  K   K +     +  
Sbjct: 334 LKGLVGSKNLTREDMESVLDKMKDHLIAKNVAADISAQLCDSVAKKLEGKVMGTFTTVAS 393

Query: 87  DVSELIHKMLMPLSKPFNWDFS----------HRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            V + +   L+                      RP VI   GVNGVGK+T + K+S  + 
Sbjct: 394 TVKQALQDSLVXXXXXXXXXXXXXXXXXXXSQRRPFVITFCGVNGVGKSTNLAKISFWLI 453

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAAALAY 183
           + G  V++AA DTFR+ A++QL+    R +                     G DAA +A 
Sbjct: 454 ENGFTVLIAACDTFRAGAVEQLRTHQRRLNSLHPPERHGGRPMVQLYEKGYGKDAAGIAM 513

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G 
Sbjct: 514 EAIAYARNQAFDVVLVDTAGRMQDNAPLMTALAKLIAV------NMPDLVLFVGEALVGN 567

Query: 244 NALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVG 292
            A+ Q+  F+                G+++TK D    + G  I +      P+ F+G G
Sbjct: 568 EAVDQLVKFNQALADHSMSDRPRLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 627

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +  NDL    A+   + + 
Sbjct: 628 QTYNDLRNLNARAVVSALM 646


>gi|67540914|ref|XP_664231.1| hypothetical protein AN6627.2 [Aspergillus nidulans FGSC A4]
 gi|40738966|gb|EAA58156.1| hypothetical protein AN6627.2 [Aspergillus nidulans FGSC A4]
 gi|259480207|tpe|CBF71127.1| TPA: signal sequence receptor alpha subunit, putative
           (AFU_orthologue; AFUA_6G03850) [Aspergillus nidulans
           FGSC A4]
          Length = 636

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 143/309 (46%), Gaps = 41/309 (13%)

Query: 26  LKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAKD--- 78
             +   + +I+  + L +   E+    +ED L++ ++    A ++ E +  +   K    
Sbjct: 321 SAIGGLLRNIVGGKILTEADLEKPLKAMEDHLLKKNVAREAAVRLCEGVKQELVGKKTGN 380

Query: 79  -VSVQRVLYDVSEL-IHKMLMPLS-----------KPFNWDFSHRPHVILVVGVNGVGKT 125
             SV   L    E  + K+L P S              N   + RP+VI +VGVNGVGK+
Sbjct: 381 FQSVDAALKSAMESSLRKILTPTSSLDLLHEIDTVTKANKQGTSRPYVISIVGVNGVGKS 440

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----------ADFVCSEIG 175
           T +GK+   +     ++++AA DTFRS A++QL++ A               +      G
Sbjct: 441 TNLGKICYFLLQNNYRILIAACDTFRSGAVEQLRVHARNLKELSARENVGAVELYEKGYG 500

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            DAA +A +A +   A   DV++IDTAGR HN+  LM+ + K  +         P+ +  
Sbjct: 501 KDAANVAKDAVEYGAANNFDVVLIDTAGRRHNDQRLMSSLEKFAKF------AQPNKIFM 554

Query: 236 VLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLG 290
           V +A  G +++ Q   F+   G      G I++K D      G L+ +V    IP+ FLG
Sbjct: 555 VGEALVGTDSVMQARNFNQAFGTGRNLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLG 614

Query: 291 VGEGINDLE 299
           VG+   DL 
Sbjct: 615 VGQHYGDLR 623


>gi|316972676|gb|EFV56341.1| signal recognition particle receptor subunit alpha [Trichinella
           spiralis]
          Length = 665

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 145/324 (44%), Gaps = 40/324 (12%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
                 L      ++ ++ L D +     E++++ LI  ++   VA K+ + + T     
Sbjct: 347 KKGGGGLLAAFQSLVGNKTLTDDLLLGPLEKMKEQLIGKNVAAEVADKLCQSVRTSLRGS 406

Query: 78  DVSVQRVLYDVSE------LIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKT 125
            V    ++  V        L+  +L P      L   F    S R + I+  GVNGVGK+
Sbjct: 407 VVGQFSLIAGVVRDAFRQCLVQLLLKPERNSCLLRDIFQARESARCYSIVFCGVNGVGKS 466

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------ADFVCSEIGSDAA 179
           T + K++  +++ G +V++AA DTFR+ A++QL+                     G DAA
Sbjct: 467 TNLAKVAFWLNENGFRVLIAACDTFRAGAVEQLRTHVRYLDELHPGLVQLYEQGYGKDAA 526

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+A  A   A+A  +DV+++DTAGR+ +N  LM  +GK+IRV      + P  VL V +A
Sbjct: 527 AVAASAISYAEANNLDVVLVDTAGRMQDNEPLMRALGKLIRV------NEPDLVLFVGEA 580

Query: 240 TTGQNALRQVEMFHAVA-----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVY 287
             G  A+ Q++ F                  G+++TK D    + G  + +      P+ 
Sbjct: 581 LVGNEAVDQLQKFSRALIDCAAVDQQDTPIDGIMLTKFDTIDDKVGAAVSMTYITGKPIL 640

Query: 288 FLGVGEGINDLEPFVAKDFSAVIT 311
           F+G G+   DL+   A      + 
Sbjct: 641 FVGTGQTYKDLKQLDANVVVNALL 664


>gi|320087981|emb|CBY97743.1| Cell division protein ftsY homolog [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 173

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 82/173 (47%), Positives = 119/173 (68%)

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           MLAAGDTFR+AA++QL++W  R +   +    G+D+A++ ++A + A+A+ VDVLI DTA
Sbjct: 1   MLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLIADTA 60

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL N S LM  + K++RV+K+LD  APH V+  +DA+TGQNA+ Q ++FH   G TG+ 
Sbjct: 61  GRLQNKSHLMEELKKIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGIT 120

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +TK+DGTA+GG +  +     IP+ ++GVGE I DL PF A DF   +    D
Sbjct: 121 LTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED 173


>gi|118351025|ref|XP_001008791.1| SRP54-type protein, GTPase domain containing protein [Tetrahymena
           thermophila]
 gi|89290558|gb|EAR88546.1| SRP54-type protein, GTPase domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 618

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 74/320 (23%), Positives = 144/320 (45%), Gaps = 35/320 (10%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLT- 72
            +GF S   K+      +  ++ LD      + ++ ++ L+  ++G  +AQ++ + +   
Sbjct: 307 KRGFFS---KIVSNFKQLTGTKILDAQDLQPILDKFKEQLMNKNVGEQIAQQLCDSIKKN 363

Query: 73  ----KRYAKDVSVQRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGV 122
               +  A  +  + V   + + I K+L P      +++        +P++I  +GVNGV
Sbjct: 364 LINTQAKALTLLNKTVKESLQDAISKILTPKRNIDIIAEAMRSREKGKPYIITFIGVNGV 423

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GK+T + K++      G  VM AA D FR+ A++Q+K                 + A +A
Sbjct: 424 GKSTNLAKVAYLFKKEGFSVMFAACDNFRAGAVEQIKTHGRCLEIPVFDRGYKDEPADIA 483

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++A ++AQAKKVDVL+IDTAGR+ +N  LM  +  ++        + P  ++ + +A  G
Sbjct: 484 FQAIREAQAKKVDVLLIDTAGRMQDNEPLMKQLSTLV------VQNNPDLIVFIGEALVG 537

Query: 243 QNALRQVEMFHAVA----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGV 291
            +   Q+  F+                 +I++K D    + G  + +      P+ F GV
Sbjct: 538 NDGTDQLMKFNKALIDLSPKDRIREIDAIILSKFDTVDDKVGAALSMTYNTGKPILFCGV 597

Query: 292 GEGINDLEPFVAKDFSAVIT 311
           G+    L+    +     + 
Sbjct: 598 GQKYTHLKKLNVRTVVHALL 617


>gi|294659968|ref|XP_462420.2| DEHA2G20196p [Debaryomyces hansenii CBS767]
 gi|199434369|emb|CAG90930.2| DEHA2G20196p [Debaryomyces hansenii]
          Length = 545

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 84/312 (26%), Positives = 142/312 (45%), Gaps = 31/312 (9%)

Query: 25  SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR-YAKDVSVQR 83
           S      +T    S    D V ++  D LI  +I    A+ I++++  K    + V++  
Sbjct: 239 SGGFFGKVTSYFGSSINIDEVSKKFLDQLITKNIAPPTAKIILDKIKNKLGNKQGVTIAM 298

Query: 84  VLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
               + E + K+L P      L +  +   S +P+VI VVGVNGVGK+T + KL+     
Sbjct: 299 YKQTMVEELTKILTPNVSTDLLYEIKDRSSSGKPYVISVVGVNGVGKSTNLAKLAYWFLQ 358

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTS-----------ADFVCSEIGSDAAALAYE-- 184
             L V++ A DTFRS A++QLK+  +               D      G     +A    
Sbjct: 359 NNLNVLICACDTFRSGAVEQLKVHVNNLQKLNNSSSSESKIDIFEKGYGGGDHVVATAKS 418

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A + A  +  D+++IDTAGR H+N+ LM  + K        D   P  ++ V +A  G +
Sbjct: 419 AIQHASTEHYDIVLIDTAGRTHSNAKLMTPLKKF------GDAANPDKIIMVGEALVGTD 472

Query: 245 ALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLE 299
           ++ Q   F+   G        I++K+D      G +I +V+  K+P+ F+G G+   D++
Sbjct: 473 SVEQAINFNNAFGNRRNLDFFIISKIDTVGDLVGTMINMVMATKVPILFVGTGQTYTDIK 532

Query: 300 PFVAKDFSAVIT 311
               K    ++ 
Sbjct: 533 RLSVKTVVDMLM 544


>gi|83771777|dbj|BAE61907.1| unnamed protein product [Aspergillus oryzae]
          Length = 607

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 42/310 (13%)

Query: 26  LKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVE----ELLTKRYAK 77
             +     +I+  + L +   E+    +ED L++ ++    A ++ +    EL+ K+   
Sbjct: 291 NAIGGLFRNIVGGKVLTESDLEKPLKAMEDHLLKKNVAREAAVRLCDGVQRELVGKKTGN 350

Query: 78  DVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGK 124
             SV   L    E  + K+L P            ++ P +   S RP+VI +VGVNGVGK
Sbjct: 351 FQSVDAALRQAMESSLRKILTPTSSLDLLREIDTVTSPTSKQQSPRPYVISIVGVNGVGK 410

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEI 174
           +T +GK+   +     +V++AA DTFRS A++QL++ A               +      
Sbjct: 411 STNLGKICYFLLQNNYRVLIAACDTFRSGAVEQLRVHARNLKELSARENVGQVELYEKGY 470

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A +A +   A K DV++IDTAGR HN+  LM+ + K  +  K      P  + 
Sbjct: 471 GKDAANVAKDAVEYGAANKFDVVLIDTAGRRHNDQRLMSSLEKFGKFAK------PDKIF 524

Query: 235 QVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFL 289
            V +A  G +++ Q   F+   G      G I++K D      G L+ +V    IP+ FL
Sbjct: 525 MVGEALVGTDSVMQARNFNQAFGTGRNLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFL 584

Query: 290 GVGEGINDLE 299
           GVG+   DL 
Sbjct: 585 GVGQHYGDLR 594


>gi|224009369|ref|XP_002293643.1| signal recognition particle-like protein [Thalassiosira pseudonana
           CCMP1335]
 gi|220971043|gb|EED89379.1| signal recognition particle-like protein [Thalassiosira pseudonana
           CCMP1335]
          Length = 368

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 77/282 (27%), Positives = 131/282 (46%), Gaps = 24/282 (8%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSE- 90
           ++   LD  +++ ++ LL   ++  + AQ I E    +LL K+    V V+R +    E 
Sbjct: 84  LTKSDLDPPLKQ-MQQLLTSKNVAPSTAQAICEVVERQLLGKKVGTLVGVKRAVRHALED 142

Query: 91  ----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
               ++   L  +           P+ I+++G+NGVGK+T + K++  +       +LAA
Sbjct: 143 AVERILCPELGGIGGRAEIKRGKSPYTIVMIGINGVGKSTSLAKIAYYLQSNQCNPLLAA 202

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFRS A++QL + A   S          D + +A  A  +A     DV++IDTAGR+ 
Sbjct: 203 CDTFRSGAVEQLSVHASCLSLPLYHQGYAKDPSTVAKAAISKATEDGNDVVLIDTAGRMQ 262

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG-------TT 259
           NN  L      M  + K +    P  VL V +A  G + + Q+ MF              
Sbjct: 263 NNVPL------MKALAKLVTETNPDLVLFVCEALVGNDGMDQLTMFQKALTSGGHTRLID 316

Query: 260 GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           G+++TK D  + + G  + +     +P+ F G G+  N L+P
Sbjct: 317 GIVLTKFDTVSDKVGAALTLTHLTGVPIAFCGTGQKYNHLKP 358


>gi|224613354|gb|ACN60256.1| Signal recognition particle receptor subunit alpha [Salmo salar]
          Length = 521

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 82/319 (25%), Positives = 140/319 (43%), Gaps = 45/319 (14%)

Query: 32  ITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-Y 86
           +  ++ S+ L     + V +++ D LI  ++   +A ++   +  K   K +     +  
Sbjct: 207 LKGLVGSKSLSQEDMEPVLDKMRDHLIAKNVAAEIASQLCGSVAKKLEGKVMGTFTTVAS 266

Query: 87  DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            V   +   L+ + +P                 RP VI   GVNGVGK+T + K+S  + 
Sbjct: 267 TVKGALQDSLVQILQPKRRVDILRDVLEARSQRRPFVITFCGVNGVGKSTNLAKISFWLI 326

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAAALAY 183
           + G  V++AA DTFR+ A++QL+    R +                     G DAA +A 
Sbjct: 327 ENGFTVLIAACDTFRAGAVEQLRTHQRRLNSLHPPQDHGGRPIVQLYEKGYGKDAAGIAM 386

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V +A  G 
Sbjct: 387 EAIAYARNQAFDVVLVDTAGRMQDNTPLMTALAKLIAV------NMPDLVLFVGEALVGN 440

Query: 244 NALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVG 292
            A+ Q+  F+                G+++TK D    + G  I +      P+ F+G G
Sbjct: 441 EAVDQLVKFNQALADHSMSDKPRLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 500

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +  NDL    A+     + 
Sbjct: 501 QTYNDLRSLNARAVVGALM 519


>gi|121703808|ref|XP_001270168.1| signal sequence receptor alpha subunit, putative [Aspergillus
           clavatus NRRL 1]
 gi|119398312|gb|EAW08742.1| signal sequence receptor alpha subunit, putative [Aspergillus
           clavatus NRRL 1]
          Length = 654

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 42/310 (13%)

Query: 26  LKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVE----ELLTKRYAK 77
             +     +I+  + L +   E+    +ED L++ ++    A ++ E    EL+ K+   
Sbjct: 338 NAIGGFFRNIVGGKVLTEADLEKPLKAMEDHLLKKNVAREAAVRLCEGVQRELVGKKTGN 397

Query: 78  DVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGK 124
             SV   L    E  + K+L P            +  P +   + RP+VI +VGVNGVGK
Sbjct: 398 FQSVDAALRSAMESSLRKILTPTSSLDLLREIETVRSPSSKGQAPRPYVISIVGVNGVGK 457

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----------ADFVCSEI 174
           +T + K+   +     +V++AA DTFRS A++QL++ A               +      
Sbjct: 458 STNLSKICYFLLQNNYRVLIAACDTFRSGAVEQLRVHARNLKELSARETAGEVELYEKGY 517

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A +A +   A   DV++IDTAGR HN+  LM+ + K  +  K      P  + 
Sbjct: 518 GKDAANVAKDAVEYGAANDFDVVLIDTAGRRHNDQRLMSSLEKFAKFAK------PDKIF 571

Query: 235 QVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFL 289
            V +A  G +++ Q   F+   G      G I++K D      G L+ +V    IP+ FL
Sbjct: 572 MVGEALVGTDSVMQARNFNQAFGTGRNLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFL 631

Query: 290 GVGEGINDLE 299
           GVG+   DL 
Sbjct: 632 GVGQHYGDLR 641


>gi|125983470|ref|XP_001355500.1| GA15385 [Drosophila pseudoobscura pseudoobscura]
 gi|54643816|gb|EAL32559.1| GA15385 [Drosophila pseudoobscura pseudoobscura]
          Length = 621

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 83/353 (23%), Positives = 148/353 (41%), Gaps = 50/353 (14%)

Query: 1   MSNQKVASESLSWIRK---LTKGFASTSLKLKEGITDIISSRRLD----DGVREELEDLL 53
           + +++ +SE  +   +   L K        L      I+  + +         E++ D L
Sbjct: 276 VDSEETSSEEDNVSSQSPALKK--NKRGGGLVSYFRGIVGGKIMSLADLQPALEKMRDHL 333

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMP------LSKP 102
           I  ++   +A K+ + + T    K V     +  + +      + ++L P      +   
Sbjct: 334 ISKNVASEIAVKLCDSVATSLEGKQVGTFDSVASLVKEALTQSLVRILSPKRRIDIIRDA 393

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                + +P+ I+  GVNGVGK+T + K+   + +    V++AA DTFR+ A++QL+   
Sbjct: 394 LECKRNGKPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHT 453

Query: 163 DRTS-------------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
              +                     G DAA +A EA K A   KVDV+++DTAGR+ +N 
Sbjct: 454 RHLNALHPPANHNNRTMVQLYEKGYGKDAAGIAMEAIKFAHETKVDVVLVDTAGRMQDNE 513

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----------TT 259
            LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+                
Sbjct: 514 PLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIID 567

Query: 260 GLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G+++TK D    + G  I +      P+ F+G G+   DL+          + 
Sbjct: 568 GIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLM 620


>gi|322693736|gb|EFY85586.1| signal sequence receptor alpha subunit [Metarhizium acridum CQMa
           102]
          Length = 654

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 153/348 (43%), Gaps = 43/348 (12%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTS-LKLKEGITDIISSRRLDDGVREE----LEDLLIR 55
           +++ +    +++   +   G   T    L     +++  + L     ++    +E+ L+R
Sbjct: 310 LASAEAEKAAVATKSETKSGLLGTGVNALGGLFRNVVGGKTLTKEDLDKAMKGMEEHLLR 369

Query: 56  SDIGVAVAQKIVEELLTK----RYAKDVSVQRVLYDVSEL-IHKMLMPLSK--------- 101
            ++    A ++ E +  +    R     S+   +    E  + KML P S          
Sbjct: 370 KNVAREAAVRLCEGVEKELVGVRTGNFESINTKIQTAMESSLTKMLTPTSSLDLLREIDS 429

Query: 102 ----PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
               P       RP+VI +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++Q
Sbjct: 430 ITAPPATSLRKARPYVISIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQ 489

Query: 158 LKIWADRTS---------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           L +                +      G DAA +A +A   A  +  DV++IDTAGR HN+
Sbjct: 490 LAVHVRNLKELTAREGGRVELYQKGYGKDAATVAKDAVSHAAQEGFDVVLIDTAGRRHND 549

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMT 264
             LM+ + K  +         P  +L V +A  G +++ Q   F+A  G      G I++
Sbjct: 550 QRLMSSLEKFAKF------AQPDKILMVGEALVGTDSVAQARNFNAAFGSVRTLDGFIIS 603

Query: 265 KMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K D      G L+ +V    +PV F+GVG+  +DL  F  K     + 
Sbjct: 604 KCDTVGDMVGTLVSLVHATNVPVLFVGVGQHYSDLRNFSVKWAVEKLL 651


>gi|82594110|ref|XP_725288.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480234|gb|EAA16853.1| similar to RIKEN cDNA 1300011P19 gene [Plasmodium yoelii yoelii]
          Length = 524

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 150/314 (47%), Gaps = 35/314 (11%)

Query: 26  LKLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-- 78
            +L + I  I SS    +      + ++++  L+  ++   +   ++E +  K   K   
Sbjct: 216 SQLNDSILKIFSSTNTIEEGDIEKILQDIKTKLLSKNVASEICDILIETMKEKLIGKKKT 275

Query: 79  ---VSVQRVLYDV-SELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              ++V++ +  + S+ +  +L+P      L          + + I  +GVNGVGK+T +
Sbjct: 276 MFSLNVKKTVSTIFSDTLQSILIPKDSVDVLRSALEAKSLGKLYSICFLGVNGVGKSTNL 335

Query: 129 GKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            K+   +   G LK+M+AA DTFR+ AI+QL+I A            G +AA +A +A  
Sbjct: 336 AKVCYYLKTKGNLKIMIAACDTFRAGAIEQLRIHAKCLDVYLFEKGYGKNAAGIAKDAIS 395

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ +K DV++IDTAGR+ +N  LM  +GK+I +      + P  +L V +A  G +A+ 
Sbjct: 396 YAKKEKYDVILIDTAGRMQDNEPLMRSLGKLILI------NNPDLILFVGEALVGNDAID 449

Query: 248 QVEMFHAVA----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           Q++ F+                G+++TK D    + G  + +V     P+ F+GVG+   
Sbjct: 450 QLKKFNQTLIDATCDTHKRTIDGIVLTKFDTVDDKVGTALSMVYLTGKPIVFVGVGQKYT 509

Query: 297 DLEPFVAKDFSAVI 310
            L+ F        +
Sbjct: 510 HLKKFNVNMVVKAL 523


>gi|324997926|ref|ZP_08119038.1| signal recognition particle GTPase [Pseudonocardia sp. P1]
          Length = 309

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 103/271 (38%), Positives = 156/271 (57%), Gaps = 5/271 (1%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKML--MPLS 100
              E++E  L+++D+G  + Q++ E+L  +  A+ V     +   + +++   L      
Sbjct: 40  ESWEDVEATLLQADLGPEMTQEVTEQLREQLAARGVRSAEQVRQTLHDVLTGALDTGQDR 99

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                    RP V+LVVGVNG GKTT  GKL++ +   G +V L A DTFR+AA +QL  
Sbjct: 100 SVHALPHEGRPAVLLVVGVNGTGKTTTTGKLARVLVAGGHRVTLGAADTFRAAAAEQLVT 159

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           W +R+ A  V    GSD A++A++A K+     VD +++DTAGRLH  + LM  +GK+ R
Sbjct: 160 WGERSGAGVVRGPEGSDPASVAFDAVKRGTDDAVDAVLLDTAGRLHTKTGLMDELGKVKR 219

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V+++        VL VLDATTGQN L Q  +F  V   TG+++TK+DGTA+GG +  +  
Sbjct: 220 VVEKQ--ARVDEVLLVLDATTGQNGLTQARVFGEVVDVTGIVLTKLDGTAKGGIVFRVQR 277

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              +PV  +G+GEG +DL PF  K F   + 
Sbjct: 278 ELGVPVKLVGLGEGPDDLAPFEPKAFVDALL 308


>gi|70951146|ref|XP_744837.1| signal recognition particle receptor alpha subunit, [Plasmodium
           chabaudi chabaudi]
 gi|56524952|emb|CAH76902.1| signal recognition particle receptor alpha subunit, putative
           [Plasmodium chabaudi chabaudi]
          Length = 532

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 152/314 (48%), Gaps = 35/314 (11%)

Query: 26  LKLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-- 78
            +L + I  + SS    +      + ++++  L+  ++ V +   ++E +  K   +   
Sbjct: 224 SQLNDSIFKMFSSNNTIEESDIEKILQDIKTKLLSKNVAVGICDVLIETMKEKLIGQKKT 283

Query: 79  ---VSVQRVLYDV-SELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              ++V++ +  + S+ +  +L+P      L          + + I  +GVNGVGK+T +
Sbjct: 284 MFSLNVKKTVSTIFSDTLQSILIPKDSVDVLRSALEAKSLGKLYSICFLGVNGVGKSTNL 343

Query: 129 GKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            K+   +   G LK+M+AA DTFR+ AI+QL+I A            G +AAA+A +A  
Sbjct: 344 AKVCYYLKSKGNLKIMIAACDTFRAGAIEQLRIHAKCLDVHLFEKGYGKNAAAIAKDAIS 403

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ +K DV++IDTAGR+ +N  LM  +GK+I +      + P  +L V +A  G +A+ 
Sbjct: 404 YAKKEKYDVILIDTAGRMQDNEPLMRSLGKLILI------NNPDLILFVGEALVGNDAID 457

Query: 248 QVEMFHAVA----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           Q++ F+                G+I+TK D    + G  + +V     P+ F+GVG+   
Sbjct: 458 QLKKFNQTLIDATCDTNKRTIDGIILTKFDTVDDKVGTALSMVYLTGRPIVFVGVGQKYT 517

Query: 297 DLEPFVAKDFSAVI 310
            L+ F        +
Sbjct: 518 HLKKFNVNMVVKAL 531


>gi|254230467|ref|ZP_04923844.1| SRP54-type protein, GTPase domain [Vibrio sp. Ex25]
 gi|151937016|gb|EDN55897.1| SRP54-type protein, GTPase domain [Vibrio sp. Ex25]
          Length = 326

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 84/171 (49%), Gaps = 6/171 (3%)

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            + D +R AAI QL+  A     DF  S        +A  A   A+ K  DVLI+DTAGR
Sbjct: 1   MSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPIDIANAAIDHAKKKFYDVLIVDTAGR 60

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           L  +  +M  I  +   +       P   L V+DA TGQ+A    + F      TG+++T
Sbjct: 61  LAIDEEMMGEIKDLHAAIN------PVETLFVVDAMTGQDAANTAKAFGDALPLTGVVLT 114

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           K+DG ARGG  + +      P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 115 KVDGDARGGAALSVRHVTGKPIKFLGVGEKTDALEPFHPDRVASRILGMGD 165


>gi|145342437|ref|XP_001416189.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576414|gb|ABO94482.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 525

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/285 (28%), Positives = 136/285 (47%), Gaps = 28/285 (9%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-----YDVSELIHKMLMP----- 98
           ++  L + ++   +A  +V E+  K   K VS  + L       + E I ++L       
Sbjct: 244 IKHKLTQKNVTSDIADLLVTEVAQKLVGKKVSTFQSLASIVYRSLEESIIRILSSAKKID 303

Query: 99  -LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            L++  +   S RP VI  VGVNGVGK+T + K+   +S     VM+AA DTFR+ A++Q
Sbjct: 304 LLTEVGSARKSRRPFVIAFVGVNGVGKSTSLSKVVHWLSQQNFSVMVAACDTFRAGAVEQ 363

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+    R            D + +A +A +QA  + +DV++IDTAGR+ +N  LM  + K
Sbjct: 364 LRTHCQRLDCALFERGYERDPSVIAQQAIQQATRQGIDVVMIDTAGRMQDNEPLMRALAK 423

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMD 267
           ++ V      + P   L V +A  G + + Q+  F                 G+ ++K D
Sbjct: 424 LLSV------NLPDLTLFVGEALVGNDGVSQILQFEHRLQALMQTEKKCVIDGIFLSKFD 477

Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
               + G  + +V    IP+ F+G G+   D+  F A++ + V+ 
Sbjct: 478 TIDNKVGTALSLVYASSIPIMFVGTGQMYKDVRTFQAENIATVLL 522


>gi|326483433|gb|EGE07443.1| signal recognition particle receptor subunit alpha [Trichophyton
           equinum CBS 127.97]
          Length = 650

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 141/308 (45%), Gaps = 42/308 (13%)

Query: 28  LKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           +     +++  + L +       + +ED L++ ++    A ++ E +  +   K  +  +
Sbjct: 336 ISSLFRNVVGGKVLTEADLVKPLKAMEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQ 395

Query: 84  VLYD-----VSELIHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +       +   + K+L P            ++ P N     RP+VI VVGVNGVGK+T
Sbjct: 396 SIDSALRAGMESSLRKILTPTTSLDLLREIEVVTSPTNQQQPRRPYVISVVGVNGVGKST 455

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEIGS 176
            + KL   +     KV++AA DTFRS A++QL++ A               +      G 
Sbjct: 456 NLSKLCFFLLQNKYKVLIAACDTFRSGAVEQLRVHARNLKELSARENAGHVELYEKGYGK 515

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           DAA +A +A   A +   DV++IDTAGR HN+  LM+ + K  +         P  +L V
Sbjct: 516 DAANVAKDAVAYAASNDFDVVLIDTAGRRHNDQRLMSSLEKFAKFAN------PDKILMV 569

Query: 237 LDATTGQNALRQVEMFHAVA----GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGV 291
            +A  G +++ Q   F+       G  G I++K D      G L+ +V    IP+ FLGV
Sbjct: 570 GEALVGTDSVMQARNFNQAFGPGRGLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGV 629

Query: 292 GEGINDLE 299
           G+   DL 
Sbjct: 630 GQHYGDLR 637


>gi|195399363|ref|XP_002058290.1| GJ16008 [Drosophila virilis]
 gi|194150714|gb|EDW66398.1| GJ16008 [Drosophila virilis]
          Length = 633

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 141/326 (43%), Gaps = 45/326 (13%)

Query: 25  SLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
           S  L      I+ ++ L         E++ D LI  ++   +A K+ + + T    K + 
Sbjct: 313 SAGLLSYFKGIVGAKTLTLSDLQPALEKMRDHLISKNVASEIAAKLCDSVATSLEGKQMG 372

Query: 81  VQRVLYD-VSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIG 129
               + + V E + + L+ +  P               + +P+ I+  GVNGVGK+T + 
Sbjct: 373 TFDSIANMVKEALTQSLVRILSPKRRIDIIRDALESKRNGKPYTIIFCGVNGVGKSTNLA 432

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGS 176
           K+   + +    V++AA DTFR+ A++QL+      +                     G 
Sbjct: 433 KICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHPAAKHNGRTMVQLYEKGYGK 492

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           DAA +A EA K A   +VDV+++DTAGR+ +N  LM  + K+I+V      + P  VL V
Sbjct: 493 DAAGIAMEAIKYAHDTRVDVVLVDTAGRMQDNEPLMRSLSKLIKV------NNPDLVLFV 546

Query: 237 LDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIP 285
            +A  G  A+ Q+  F+                G+++TK D    + G  I +      P
Sbjct: 547 GEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQP 606

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + F+G G+   DL+        + + 
Sbjct: 607 IVFVGTGQTYADLKAINVNAVVSSLM 632


>gi|84995142|ref|XP_952293.1| signal recognition particle receptor alpha subunit [Theileria
           annulata strain Ankara]
 gi|65302454|emb|CAI74561.1| signal recognition particle receptor alpha subunit, putative
           [Theileria annulata]
          Length = 547

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 135/281 (48%), Gaps = 24/281 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-----YDVSELIHKMLMP----- 98
           L D L   ++   + + I   + T    K     R L       + + + ++L P     
Sbjct: 272 LTDKLRSKNVAGDICEMICRSVSTHLVGKRTESLRSLSSTVKKALEDSVRRILTPKNPIN 331

Query: 99  -LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            + +    + +   + I+ +GVNGVGK+T + K++  +  +G KV++ A DTFRS A++Q
Sbjct: 332 LIKQVKELNANGSVYSIVFLGVNGVGKSTSLAKVAYLLKSSGFKVLVIACDTFRSGAVEQ 391

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           LK               G D + +A E  K A A + DV++IDTAGR+ +N  LMA + K
Sbjct: 392 LKTHTRNLGLQLFERGYGKDPSQIAKEGLKYATANQFDVVLIDTAGRMQDNEPLMAALTK 451

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG------TTGLIMTKMDG-TA 270
           +I V      + P+ +L V +A  G +A+ Q++ F+   G         L++TK D    
Sbjct: 452 LITV------NNPNLILFVGEALVGNDAVDQLKKFNTAIGKGTDRSIDALLLTKFDTVDD 505

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           + G  + +V     P+ F+G G+  +DL+P   +  +  + 
Sbjct: 506 KVGAALSMVYITGKPILFVGNGQTYSDLQPLDVELITKFLL 546


>gi|218679901|ref|ZP_03527798.1| signal recognition particle protein [Rhizobium etli CIAT 894]
          Length = 388

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 7/188 (3%)

Query: 129 GKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            K++ ++S     KV++A+ DT R AA +QL+    + S D +    G     +A  A +
Sbjct: 1   AKIAHRLSTRDKKKVLMASLDTRRPAAQEQLRQLGAQASIDTLPVISGQSPTDIAARAVQ 60

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+    DV+I+DTAGR H +  LM  +  + +         PH +L V D+ TGQ+A+ 
Sbjct: 61  AARLGGHDVVILDTAGRTHIDEPLMVEMADIKK------KSNPHEILLVADSLTGQDAVN 114

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
               F    G TGL++T+MDG  RGG  + +      P+  +GVGE +++LE F  +  +
Sbjct: 115 LARNFDERVGITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMSELEEFHPRRIA 174

Query: 308 AVITGCLD 315
             I G  D
Sbjct: 175 DRILGMGD 182


>gi|296814538|ref|XP_002847606.1| signal recognition particle receptor subunit alpha [Arthroderma
           otae CBS 113480]
 gi|238840631|gb|EEQ30293.1| signal recognition particle receptor subunit alpha [Arthroderma
           otae CBS 113480]
          Length = 646

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 143/313 (45%), Gaps = 42/313 (13%)

Query: 23  STSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           S+   +     +++  + L +       + +ED L++ ++    A ++ E +  +   K 
Sbjct: 327 SSLGAISNMFRNVVGGKVLTEADLVKPLKAMEDHLLKKNVAREAAVRLCEGVQKELVGKK 386

Query: 79  VSVQRVLYD-----VSELIHKMLMP------------LSKPFNWDFSHRPHVILVVGVNG 121
            +  + +       +   + K+L P            ++ P N     RP+VI VVGVNG
Sbjct: 387 TASFQSIDSALRAGMESSLRKILTPTSSLDLLREIEVVTSPTNKQQPRRPYVISVVGVNG 446

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVC 171
           VGK+T + KL   +     KV++AA DTFRS A++QL++ A               +   
Sbjct: 447 VGKSTNLSKLCFFLLQNKYKVLIAACDTFRSGAVEQLRVHARNLKELSARENVGHVELYE 506

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G DAA +A +A   A A   DV++IDTAGR HN+  LM+ + K  +         P 
Sbjct: 507 KGYGKDAANVAKDAVSYAAANDFDVVLIDTAGRRHNDQRLMSSLEKFAKFAN------PD 560

Query: 232 SVLQVLDATTGQNALRQVEMFHAVA----GTTGLIMTKMDGTARG-GGLIPIVVTHKIPV 286
            +L V +A  G +++ Q   F+       G  G I++K D      G L+ +V    IP+
Sbjct: 561 KILMVGEALVGTDSVMQARNFNQAFGAGRGLDGFIISKCDTVGDMVGTLVSMVHATGIPI 620

Query: 287 YFLGVGEGINDLE 299
            FLGVG+   DL 
Sbjct: 621 VFLGVGQHYGDLR 633


>gi|302504693|ref|XP_003014305.1| hypothetical protein ARB_07612 [Arthroderma benhamiae CBS 112371]
 gi|291177873|gb|EFE33665.1| hypothetical protein ARB_07612 [Arthroderma benhamiae CBS 112371]
          Length = 650

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 141/308 (45%), Gaps = 42/308 (13%)

Query: 28  LKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           +     +++  + L +       + +ED L++ ++    A ++ E +  +   K  +  +
Sbjct: 336 ISSLFRNVVGGKVLTEADLVKPLKAMEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQ 395

Query: 84  VLYD-----VSELIHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +       +   + K+L P            ++ P N     RP+VI VVGVNGVGK+T
Sbjct: 396 SIDSALRAGMESSLRKILTPTTSLDLLREIEVVTSPTNQQHPRRPYVISVVGVNGVGKST 455

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEIGS 176
            + KL   +     KV++AA DTFRS A++QL++ A               +      G 
Sbjct: 456 NLSKLCFFLLQNKYKVLIAACDTFRSGAVEQLRVHARNLKELSARENAGHVELYEKGYGK 515

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           DAA +A +A   A +   DV++IDTAGR HN+  LM+ + K  +         P  +L V
Sbjct: 516 DAANVAKDAVAYAASNDFDVVLIDTAGRRHNDQRLMSSLEKFAKFAN------PDKILMV 569

Query: 237 LDATTGQNALRQVEMFHAVA----GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGV 291
            +A  G +++ Q   F+       G  G I++K D      G L+ +V    IP+ FLGV
Sbjct: 570 GEALVGTDSVMQARNFNQAFGPGRGLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGV 629

Query: 292 GEGINDLE 299
           G+   DL 
Sbjct: 630 GQHYGDLR 637


>gi|303324207|ref|XP_003072091.1| signal recognition particle protein, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240111801|gb|EER29946.1| signal recognition particle protein, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320037086|gb|EFW19024.1| signal sequence receptor alpha subunit [Coccidioides posadasii str.
           Silveira]
          Length = 647

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 42/308 (13%)

Query: 28  LKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDV 79
           +     +++  + L     E+    +ED L++ ++    A ++ E    EL+ K+     
Sbjct: 333 ISGLFRNVVGGKVLTKADLEKPIKAMEDHLLKKNVAREAALRLCEGVEHELVGKKTGSFQ 392

Query: 80  SVQRVLYDVSE-LIHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           S+   L    E  + K+L P            ++ P N   + RP+VI +VGVNGVGK+T
Sbjct: 393 SIDSALRSAMESSLRKILTPTSSLDLLREIDAVTSPRNNQQARRPYVISIVGVNGVGKST 452

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEIGS 176
            + K+   +     KV++AA DTFRS A++QL++ A               +      G 
Sbjct: 453 NLSKICFFLLQNNYKVLIAACDTFRSGAVEQLRVHARNLKELSEREQVGQIELYEKGYGK 512

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           DAA +A +A   A +   DV++IDTAGR HN+  LM+ + K  +        AP  +  V
Sbjct: 513 DAANVAKDAVAYAASNDFDVVLIDTAGRRHNDQRLMSSLEKFAKF------AAPDKIFMV 566

Query: 237 LDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGV 291
            +A  G +++ Q   F+   G      G I++K D      G L+ +V    IP+ FLGV
Sbjct: 567 GEALVGTDSVMQARNFNQAFGTGRSLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGV 626

Query: 292 GEGINDLE 299
           G+   DL 
Sbjct: 627 GQHYGDLR 634


>gi|119173320|ref|XP_001239133.1| hypothetical protein CIMG_10155 [Coccidioides immitis RS]
          Length = 647

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 42/308 (13%)

Query: 28  LKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDV 79
           +     +++  + L     E+    +ED L++ ++    A ++ E    EL+ K+     
Sbjct: 333 ISGLFRNVVGGKVLTKADLEKPIKAMEDHLLKKNVAREAALRLCEGVEHELVGKKTGSFQ 392

Query: 80  SVQRVLYDVSE-LIHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           S+   L    E  + K+L P            ++ P N   + RP+VI +VGVNGVGK+T
Sbjct: 393 SIDSALRSAMESSLRKILTPTSSLDLLREIDAVTSPRNNQQARRPYVISIVGVNGVGKST 452

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEIGS 176
            + K+   +     KV++AA DTFRS A++QL++ A               +      G 
Sbjct: 453 NLSKICFFLLQNNYKVLIAACDTFRSGAVEQLRVHARNLKELSEREQVGQIELYEKGYGK 512

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           DAA +A +A   A +   DV++IDTAGR HN+  LM+ + K  +        AP  +  V
Sbjct: 513 DAANVAKDAVAYAASNDFDVVLIDTAGRRHNDQRLMSSLEKFAKF------AAPDKIFMV 566

Query: 237 LDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGV 291
            +A  G +++ Q   F+   G      G I++K D      G L+ +V    IP+ FLGV
Sbjct: 567 GEALVGTDSVMQARNFNQAFGAGRSLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGV 626

Query: 292 GEGINDLE 299
           G+   DL 
Sbjct: 627 GQHYGDLR 634


>gi|326469321|gb|EGD93330.1| signal sequence receptor alpha subunit [Trichophyton tonsurans CBS
           112818]
          Length = 650

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 141/308 (45%), Gaps = 42/308 (13%)

Query: 28  LKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           +     +++  + L +       + +ED L++ ++    A ++ E +  +   K  +  +
Sbjct: 336 ISSLFRNVVGGKVLTEADLVKPLKAMEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQ 395

Query: 84  VLYD-----VSELIHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +       +   + K+L P            ++ P N     RP+VI VVGVNGVGK+T
Sbjct: 396 SIDSALRAGMESSLRKILTPTTSLDLLREIEVVTSPTNQQQPRRPYVISVVGVNGVGKST 455

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEIGS 176
            + KL   +     KV++AA DTFRS A++QL++ A               +      G 
Sbjct: 456 NLSKLCFFLLQNKYKVLIAACDTFRSGAVEQLRVHARNLKELSARENAGHVELYEKGYGK 515

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           DAA +A +A   A +   DV++IDTAGR HN+  LM+ + K  +         P  +L V
Sbjct: 516 DAANVAKDAVAYAASNDFDVVLIDTAGRRHNDQRLMSSLEKFAKFAN------PDKILMV 569

Query: 237 LDATTGQNALRQVEMFHAVA----GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGV 291
            +A  G +++ Q   F+       G  G I++K D      G L+ +V    IP+ FLGV
Sbjct: 570 GEALVGTDSVMQARNFNQAFGPGRGLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGV 629

Query: 292 GEGINDLE 299
           G+   DL 
Sbjct: 630 GQHYGDLR 637


>gi|168057840|ref|XP_001780920.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667633|gb|EDQ54258.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 633

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 29/292 (9%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSK 101
           +   +  ++ L+  ++   +A+K+ + +      K   S  R+   V   + + L+ +  
Sbjct: 347 EPALKIFKERLMTKNVAADIAEKLCDSVAASLVGKKQGSFTRITTTVQAAMEESLVRILT 406

Query: 102 PF----------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           P                 RP+ I+ VGVNGVGK+T + K++  +    +KVM+AA DTFR
Sbjct: 407 PKRSVDILRDVHQAKEVGRPYTIVFVGVNGVGKSTNLAKVAYWLQQHDIKVMMAACDTFR 466

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           S A++QL+  A R            D A +A +A  +A+  K DV+++DTAGR+ +N  L
Sbjct: 467 SGAVEQLRTHARRLQIPIFERGYEKDPAVVARDAIYEAKRTKQDVVLVDTAGRMQDNEPL 526

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA-----------GTTG 260
           M  + K+I +      + P  VL V +A  G + + Q+  F+                 G
Sbjct: 527 MRALSKLINM------NDPDLVLFVGEALVGNDGVHQLTQFNQKLADLSSTSSQTQSIDG 580

Query: 261 LIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +++TK D    + G  + +V T   PV F+G G+   DL+    K     + 
Sbjct: 581 ILLTKFDTIDDKVGAALSMVYTSGAPVMFVGCGQNYTDLKKLNIKSVMKSLL 632


>gi|68072141|ref|XP_677984.1| signal recognition particle receptor alpha subunit, [Plasmodium
           berghei strain ANKA]
 gi|56498300|emb|CAH97107.1| signal recognition particle receptor alpha subunit, putative
           [Plasmodium berghei]
          Length = 546

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 83/333 (24%), Positives = 155/333 (46%), Gaps = 36/333 (10%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S+  +     + + +L        L       + I    + + + +E++  L+  ++   
Sbjct: 225 SDSSITENKNNIMSQLNDSILKMFLS-----NNTIEESDI-EKILQEIKTKLLSKNVASE 278

Query: 62  VAQKIVEELLTKRYAKD-----VSVQRVLYDV-SELIHKMLMP------LSKPFNWDFSH 109
           +   ++E +  K   K      ++V++ +  + S+ +  +L+P      L          
Sbjct: 279 ICDILIERMKEKLIGKKKTMFSLNVKKTVSTIFSDTLQSILIPKDSVDVLRSALEAKSLG 338

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           + + I  +GVNGVGK+T + K+   +   G LK+M+AA DTFR+ AI+QL+I A      
Sbjct: 339 KLYSICFLGVNGVGKSTNLAKVCYYLKTKGNLKIMIAACDTFRAGAIEQLRIHAKCLDVY 398

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                 G +AAA+A +A   A+ +K DV++IDTAGR+ +N  LM  +GK+I +      +
Sbjct: 399 LFEKGYGKNAAAIAKDAISYAKKEKYDVILIDTAGRMQDNEPLMRSLGKLILI------N 452

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVA----------GTTGLIMTKMDG-TARGGGLIP 277
            P  +L V +A  G +A+ Q++ F+                G+++TK D    + G  + 
Sbjct: 453 NPDLILFVGEALVGNDAIDQLKKFNQTLIDATCDTHKRTIDGILLTKFDTVDDKVGTALS 512

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           +V     P+ F+GVG+    L+ F        +
Sbjct: 513 MVYLTGRPIVFVGVGQKYTHLKKFNVNMVVKAL 545


>gi|315053627|ref|XP_003176188.1| signal recognition particle receptor subunit alpha [Arthroderma
           gypseum CBS 118893]
 gi|311338034|gb|EFQ97236.1| signal recognition particle receptor subunit alpha [Arthroderma
           gypseum CBS 118893]
          Length = 650

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 140/308 (45%), Gaps = 42/308 (13%)

Query: 28  LKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           +     +++  + L +       + +ED L++ ++    A ++ E +  +   K  +  +
Sbjct: 336 ISSMFRNVVGGKVLTEADLVKPLKAMEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQ 395

Query: 84  VLYD-----VSELIHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +       +   + K+L P            ++ P N     RP+VI VVGVNGVGK+T
Sbjct: 396 SIDSALRAGMESSLRKILTPTSSLDLLREIEVVTSPTNRQQPRRPYVISVVGVNGVGKST 455

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEIGS 176
            + KL   +     KV++AA DTFRS A++QL++ A               +      G 
Sbjct: 456 NLSKLCFFLLQNKYKVLIAACDTFRSGAVEQLRVHARNLKELSARENAGHVELYEKGYGK 515

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           DAA +A +A   A     DV++IDTAGR HN+  LM+ + K  +         P  +L V
Sbjct: 516 DAANVAKDAVSYAATNDFDVVLIDTAGRRHNDQRLMSSLEKFAKFAN------PDKILMV 569

Query: 237 LDATTGQNALRQVEMFHAVA----GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGV 291
            +A  G +++ Q   F+       G  G I++K D      G L+ +V    IP+ FLGV
Sbjct: 570 GEALVGTDSVMQARNFNQAFGSGRGLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGV 629

Query: 292 GEGINDLE 299
           G+   DL 
Sbjct: 630 GQHYGDLR 637


>gi|195438862|ref|XP_002067351.1| GK16226 [Drosophila willistoni]
 gi|194163436|gb|EDW78337.1| GK16226 [Drosophila willistoni]
          Length = 624

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 140/329 (42%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD-DGV---REELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
                 L      I+ ++ +  + +    E++ D LI  ++   +A K+ + + T    K
Sbjct: 301 KKKRGGLLSYFKGIVGAKTMSREDLQPALEKMRDHLISKNVASEIAIKLCDSVATSLEGK 360

Query: 78  DVSVQRVLYDVSEL-----IHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +     +  + +      + ++L P      +        + +P+ I+  GVNGVGK+T
Sbjct: 361 QMGTFDSIATLVKEALTQSLVRILSPKRRIDIIRDALESKRNGKPYTIIFCGVNGVGKST 420

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+   + +    V++AA DTFR+ A++QL+      +                    
Sbjct: 421 NLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHPPAKHNNRSMVQLYEKG 480

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA K A   KVDV+++DTAGR+ +N  LM  + K+I+V      + P  V
Sbjct: 481 YGKDAAGIAMEAIKYAHDTKVDVVLVDTAGRMQDNEPLMRSLSKLIKV------NNPDLV 534

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 535 LFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYIT 594

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL+          + 
Sbjct: 595 GQPIVFVGTGQTYADLKAINVNAVVNSLM 623


>gi|307214651|gb|EFN89594.1| Signal recognition particle receptor subunit alpha-like protein
           [Harpegnathos saltator]
          Length = 621

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/316 (25%), Positives = 145/316 (45%), Gaps = 45/316 (14%)

Query: 35  IISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--- 87
           ++ S+ L       V ++L+D LI  ++   +AQK+ + + TK   K +     + +   
Sbjct: 311 LVGSKSLKHDDMAPVLDKLKDHLITKNVAADIAQKLCDSVGTKLEGKVLGTFDNVANTVK 370

Query: 88  --VSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             +++ + ++L P      L        + RP+V+   GVNGVGK+T + K+   + +  
Sbjct: 371 ATLTDALVQILSPKRRIDILRDALEAKKTGRPYVMTFCGVNGVGKSTNLAKICFWLIENN 430

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAAALAYEAF 186
            +V++AA DTFR+ A++QL+      +                     G DAA +A EA 
Sbjct: 431 FRVLIAACDTFRAGAVEQLRTHMRHLNALHPQEKHGNVPMVQLYEKGYGKDAAGIAMEAI 490

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A+    D++++DTAGR+ +N  LM  + K+I+V      + P  VL V +A  G  A+
Sbjct: 491 RFAKDCLFDIVLVDTAGRMQDNEPLMRALAKLIKV------NEPDLVLFVGEALVGNEAV 544

Query: 247 RQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGI 295
            Q+  F+                G+++TK D    + G  I +      P+ F+G G+  
Sbjct: 545 DQLVKFNQALADYSQSVNPHIIDGIVLTKFDTIDDKVGAAITMTYITGQPIVFVGTGQTY 604

Query: 296 NDLEPFVAKDFSAVIT 311
            DL+   AK     + 
Sbjct: 605 TDLKSLNAKAVVHALM 620


>gi|27573183|gb|AAO19991.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 311

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 116/199 (58%), Gaps = 2/199 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGR 204
            + A+A+ +D+++ DTAGR
Sbjct: 291 VQAAKARGIDIVLADTAGR 309


>gi|56758718|gb|AAW27499.1| SJCHGC06360 protein [Schistosoma japonicum]
          Length = 659

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 146/335 (43%), Gaps = 47/335 (14%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +   L +G      ++  G   +++   +     E+L + L+  ++ +++A+++   + 
Sbjct: 336 GFASSLLRGL-----RIAGGTGRVLTQEDITPC-LEQLRERLVSKNVAMSIAERVCSSVS 389

Query: 72  TKRYAKDVSVQRVLYD-----VSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVN 120
            +     +     +Y      + ++  ++L+       L    +     RP+ I+  GVN
Sbjct: 390 DRLVGTSLGTFERIYPRVKASLEDVCSRILVSGRRVDVLRDALDARTPGRPYSIVFCGVN 449

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------A 167
           GVGK+T + K++  + +   +V++AA DTFRS A++QL+    + +              
Sbjct: 450 GVGKSTNLAKIAFWLIEKNFRVLIAACDTFRSGAVEQLRTHVRKLNYIHPADQHGGQIMV 509

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           +      G DAA++A  A   A+ +  DV+++DTAGR+ +N  LM  +  +I+       
Sbjct: 510 ELYEQGYGRDAASIARSAINYARDRHFDVVLVDTAGRMQDNEPLMRALALLIQ------T 563

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLI 276
           + P  VL V +A  G  A+ Q+  F+                G+++TK D    + G  I
Sbjct: 564 NQPDLVLFVGEALVGNEAVDQLVKFNQSLADHSYSDHPRCIDGIVLTKFDTIDDKVGAAI 623

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            +      P+ F+G G+  +DL           + 
Sbjct: 624 SMACISNQPIVFVGTGQTYSDLRQLSVNAVVKALM 658


>gi|36939157|gb|AAQ86949.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 311

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 116/199 (58%), Gaps = 2/199 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTAGDSAAVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGR 204
            + A+A+ +D+++ DTAGR
Sbjct: 291 VQAAKARGIDIVLADTAGR 309


>gi|196016166|ref|XP_002117937.1| hypothetical protein TRIADDRAFT_33282 [Trichoplax adhaerens]
 gi|190579510|gb|EDV19604.1| hypothetical protein TRIADDRAFT_33282 [Trichoplax adhaerens]
          Length = 614

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 77/328 (23%), Positives = 141/328 (42%), Gaps = 44/328 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
                 L      +   + +       + E++++ LI  ++   +A ++   + TK   K
Sbjct: 291 KKQQTGLLSFFKTLTGQKIITKEGMVPILEKMKEHLIAKNVAADIADQLCSSVSTKLEGK 350

Query: 78  DVSV-----QRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +         V   ++E + ++L P      L          +P+ I   GVNGVGK+T
Sbjct: 351 VIGTFGGITSEVKKTLAESLTQLLSPRRQIDILRDCMEAKRRQKPYSITFCGVNGVGKST 410

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------------ADFVCSEI 174
            + K+   + + G +V++AA DTFR+ A++QL+      +                    
Sbjct: 411 NLAKICFWLMENGYRVLIAACDTFRAGAVEQLRTHVRHLNALHPAEGDEEPSVILFEKGY 470

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A +A   AQ + +DV++IDTAGR+ +N  LM  + K++ +      + P  VL
Sbjct: 471 GKDAAGIAMDAINFAQDRIIDVVLIDTAGRMQDNEPLMRSLAKLVHI------NEPDLVL 524

Query: 235 QVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHK 283
            V +A  G  A+ Q++ F+                G+++TK D    + G  I +  T  
Sbjct: 525 FVGEALVGNEAVDQLKKFNHAMMDFSKSDNPRLIDGILLTKFDTIDDKVGAAISMTYTAG 584

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            P+ F+G G+   DL+    +     + 
Sbjct: 585 QPIVFVGTGQTYADLKRLNVQIVVNSLL 612


>gi|36939139|gb|AAQ86946.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 311

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 115/199 (57%), Gaps = 2/199 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMETTEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTAGDSAAVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGR 204
            + A+A+ +D+++ DTAGR
Sbjct: 291 VQAAKARGIDIVLADTAGR 309


>gi|123473765|ref|XP_001320069.1| SRP54-type protein [Trichomonas vaginalis G3]
 gi|121902866|gb|EAY07846.1| SRP54-type protein, putative [Trichomonas vaginalis G3]
          Length = 533

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 135/311 (43%), Gaps = 33/311 (10%)

Query: 28  LKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
               ++ I+  + LD    +   +E E  LI  ++  A+A ++   +  K         +
Sbjct: 226 FSGILSGIVGEKSLDIKTLEPFLKEFESHLISKNVASAIAHELTTAVGQKLDGTKCGTFQ 285

Query: 84  VLYDV-----SELIHKMLMP-----LSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLS 132
            +  V      E I ++L P     + +         +P+V   +GVNGVGK+T + K++
Sbjct: 286 SVKTVVMATLREQIERILTPHRSIDIIRDIQLARKQGKPYVFSFIGVNGVGKSTTLAKVA 345

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQA 191
             M     KV++   DTFRS A+ QL   A+R   +         D   +A +A + A  
Sbjct: 346 YLMKSHDFKVLIVGCDTFRSGAVKQLAEHAERLGIELFQRGNDRRDPVPVAKDAIQYAID 405

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           KK+DV+++DTAGR+ N+  LM  I ++I  +K      P   L V +A  G N   Q+  
Sbjct: 406 KKIDVVLVDTAGRMQNSEGLMKQIARLINEVK------PDLSLFVAEALVGGNGSDQISS 459

Query: 252 FH----------AVAGTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           F              G  G+++TK D    + G  + +V     P+ +LGVG+   DL  
Sbjct: 460 FDMNLKRYAGVKDAKGIDGIVLTKFDTIDDKVGAALTLVYETGHPIIYLGVGQTYRDLRR 519

Query: 301 FVAKDFSAVIT 311
              +     + 
Sbjct: 520 MNPEFVVNTLL 530


>gi|27573177|gb|AAO19988.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 296

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 115/199 (57%), Gaps = 2/199 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 97  EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 156

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 157 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 216

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 217 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTTGDSAAVCFDA 275

Query: 186 FKQAQAKKVDVLIIDTAGR 204
            + A+A+ +D+++ DTAGR
Sbjct: 276 VQAAKARGIDIVLADTAGR 294


>gi|302654315|ref|XP_003018965.1| hypothetical protein TRV_06976 [Trichophyton verrucosum HKI 0517]
 gi|291182655|gb|EFE38320.1| hypothetical protein TRV_06976 [Trichophyton verrucosum HKI 0517]
          Length = 650

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 140/308 (45%), Gaps = 42/308 (13%)

Query: 28  LKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           +     +++  + L +       + +ED L++ ++    A ++ E +  +   K  +  +
Sbjct: 336 ISSLFRNVVGGKVLTEADLVKPLKAMEDHLLKKNVAREAAVRLCEGVQKELVGKKTASFQ 395

Query: 84  VLYD-----VSELIHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +       +   + K+L P            ++ P N     RP+VI VVGVNGVGK+T
Sbjct: 396 SIDSALRAGMESSLRKILTPTTSLDLLREIEVVTSPTNQQQPRRPYVISVVGVNGVGKST 455

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEIGS 176
            + KL   +     KV++AA DTFRS A++QL++ A               +      G 
Sbjct: 456 NLSKLCFFLLQNKYKVLIAACDTFRSGAVEQLRVHARNLKELSARENAGHVELYEKGYGK 515

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           DAA +A +A   A     DV++IDTAGR HN+  LM+ + K  +         P  +L V
Sbjct: 516 DAANVAKDAVAYAATNDFDVVLIDTAGRRHNDQRLMSSLEKFAKFAN------PDKILMV 569

Query: 237 LDATTGQNALRQVEMFHAVA----GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGV 291
            +A  G +++ Q   F+       G  G I++K D      G L+ +V    IP+ FLGV
Sbjct: 570 GEALVGTDSVMQARNFNQAFGPGRGLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGV 629

Query: 292 GEGINDLE 299
           G+   DL 
Sbjct: 630 GQHYGDLR 637


>gi|27573161|gb|AAO19980.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573163|gb|AAO19981.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573169|gb|AAO19984.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573173|gb|AAO19986.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|36939127|gb|AAQ86943.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|36939164|gb|AAQ86950.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|37623912|gb|AAQ95588.1| regulatory protein [Neisseria gonorrhoeae]
 gi|37623914|gb|AAQ95589.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 311

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 115/199 (57%), Gaps = 2/199 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTTGDSAAVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGR 204
            + A+A+ +D+++ DTAGR
Sbjct: 291 VQAAKARGIDIVLADTAGR 309


>gi|27573157|gb|AAO19978.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|36939131|gb|AAQ86944.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|36939151|gb|AAQ86948.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|37623910|gb|AAQ95587.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 311

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 115/199 (57%), Gaps = 2/199 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTAGDSAAVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGR 204
            + A+A+ +D+++ DTAGR
Sbjct: 291 VQAAKARGIDIVLADTAGR 309


>gi|237844315|ref|XP_002371455.1| signal recognition particle protein, putative [Toxoplasma gondii
           ME49]
 gi|211969119|gb|EEB04315.1| signal recognition particle protein, putative [Toxoplasma gondii
           ME49]
          Length = 564

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 92/332 (27%), Positives = 151/332 (45%), Gaps = 42/332 (12%)

Query: 7   ASESLSWIRKLTKGFAS-TSLKL--KEGITDIISSRRL---DDGVREELEDLLIRSDIGV 60
           A+ +  W R LT    S T  KL     I +++ + R    +  V EE+ DLL+ S    
Sbjct: 247 AAAASGWFRSLTSKLQSFTGNKLLTNADIAEVLPAFRAHLAEKNVAEEVIDLLLHS---- 302

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSK------PFNWDFSHRPHV 113
                +   L   R A   SV + +   + + I K+L P                 R   
Sbjct: 303 -----VQSRLKGTRTASFTSVHQTVRMAMRDAIVKILTPKKTVDVLRLALEAKAEGRVFS 357

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I+ +GVNGVGK+T + K++  +   G L V++AA DTFR+ A++QL+  +          
Sbjct: 358 IVFLGVNGVGKSTNLAKVAYYLKHKGNLDVLIAACDTFRAGAVEQLRTHSRCLQVPLFER 417

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAAA+A EA   A+ +  DV++IDTAGR+ +N  LM  + K++ +      ++P  
Sbjct: 418 GYGKDAAAIAREALATARQEGRDVVLIDTAGRMQDNEPLMRSLAKLVAM------NSPDM 471

Query: 233 VLQVLDATTGQNALRQVEMFHAVA------------GTTGLIMTKMDG-TARGGGLIPIV 279
           +L V +A  G +A+ Q++ F+                  G+I+TK D    + G  + +V
Sbjct: 472 ILFVGEALVGNDAVDQLKKFNQALVDLTALGGRPPRTVDGIILTKFDTVDDKVGAALSMV 531

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                PV F+G G+   +L+          + 
Sbjct: 532 YITGQPVVFVGTGQKYPNLKKLNPTMVVKALL 563


>gi|27573165|gb|AAO19982.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573171|gb|AAO19985.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573179|gb|AAO19989.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573181|gb|AAO19990.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573187|gb|AAO19993.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573189|gb|AAO19994.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|37623916|gb|AAQ95590.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 311

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 115/199 (57%), Gaps = 2/199 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTTGDSAAVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGR 204
            + A+A+ +D+++ DTAGR
Sbjct: 291 VQAAKARGIDIVLADTAGR 309


>gi|36939135|gb|AAQ86945.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|36939145|gb|AAQ86947.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 311

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 115/199 (57%), Gaps = 2/199 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTAGDSAAVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGR 204
            + A+A+ +D+++ DTAGR
Sbjct: 291 VQAAKARGIDIVLADTAGR 309


>gi|27573167|gb|AAO19983.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|27573175|gb|AAO19987.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 311

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 115/199 (57%), Gaps = 2/199 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMDATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTTGDSAAVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGR 204
            + A+A+ +D+++ DTAGR
Sbjct: 291 VQAAKARGIDIVLADTAGR 309


>gi|168029678|ref|XP_001767352.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681416|gb|EDQ67843.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 591

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 145/318 (45%), Gaps = 35/318 (11%)

Query: 22  ASTSLKLKEG--ITDIISSRRLDDGVRE--ELEDLL--IRSDIGVAVAQKIVEELLTKRY 75
           + T+    +   +T ++ S  +     E  +LE  L  +  ++   +A+K+ E +     
Sbjct: 280 SRTTESGTKKGWLTSLVQSIAVK-ATLEYVDLEPALKILTKNVATDIAEKLCESVAASLV 338

Query: 76  AKDV-SVQRVLYDVSELIHKMLMPLSKPF----------NWDFSHRPHVILVVGVNGVGK 124
            K   S  R+   V   + + L+ +  P               + RP+ I+ VGVNGVGK
Sbjct: 339 GKQQGSFTRISTTVQAAMEEALVRILTPKRSVDILGDIHQDKETGRPYTIVFVGVNGVGK 398

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           +T + K++  +    +KVM+AA DTFRS A++QL+  A R            D A +A +
Sbjct: 399 STNLAKVAYWLQQHDIKVMMAACDTFRSGAVEQLRTHARRLQIPIFQRGYERDPAVVARD 458

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   ++  K DV++IDTAGR+ +N  LM  + K+I +      + P  VL V +A  G +
Sbjct: 459 AIYDSKRTKQDVVLIDTAGRMQDNEPLMRALSKLINM------NGPDLVLFVGEALVGND 512

Query: 245 ALRQVEMFHAVA----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGE 293
            + Q+  F+                G+++TK D    + G  + +V T   PV F+G G+
Sbjct: 513 GVHQLTQFNQKLADLSTSSQTQSIDGILLTKFDTNNDKVGAALSMVYTSGAPVMFVGCGQ 572

Query: 294 GINDLEPFVAKDFSAVIT 311
              DL+    K     + 
Sbjct: 573 NYTDLKKLNVKSVMKSLL 590


>gi|46128914|ref|XP_388961.1| hypothetical protein FG08785.1 [Gibberella zeae PH-1]
          Length = 659

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 150/347 (43%), Gaps = 46/347 (13%)

Query: 2   SNQKVASESLSWIRKLTKGFASTS-LKLKEGITDIISSRRLDDGVREE----LEDLLIRS 56
           S  + A+E+ S       G   T    +     +++  + L     ++    +E+ L++ 
Sbjct: 319 SEAEKAAETKSQS---KSGLLGTGVSAISGLFRNVVGGKTLTKEDLDKAMKGMEEHLLQK 375

Query: 57  DIGVAVAQKIVEELLTKRYAKDV----SVQRVLYDVSEL-IHKMLMPLSK---------- 101
           ++    A ++ E +  +          S+   +    E  + KML P S           
Sbjct: 376 NVAREAAVRLCEGVEKELVGVKTGSFESINARIQAAMEASLTKMLTPTSSLDLLREIDAI 435

Query: 102 ---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
                      RP+V+ +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++QL
Sbjct: 436 TAPSVTSLRKPRPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQL 495

Query: 159 KIWADRTS---------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            +                +      G DAA +A +A   A  +  DV++IDTAGR HN+ 
Sbjct: 496 AVHVRNLKELTAREGGRVELYQKGYGKDAATVAKDAVSHAAQEGYDVVLIDTAGRRHNDQ 555

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTK 265
            LM+ + K  +         P  +L V +A  G +++ Q   F+A  G      G I++K
Sbjct: 556 RLMSSLEKFAKF------AQPDKILMVGEALVGTDSVAQARNFNAAFGAVRTLDGFIISK 609

Query: 266 MDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            D      G L+ +V    +PV F+GVG+  +DL  F  K     + 
Sbjct: 610 CDTVGDMVGTLVSLVHATNVPVLFVGVGQHYSDLRNFSVKWAVEKLL 656


>gi|27573185|gb|AAO19992.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 311

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 115/199 (57%), Gaps = 2/199 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTTGDSAAVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGR 204
            + A+A+ +D+++ DTAGR
Sbjct: 291 VQAAKARGIDIVLADTAGR 309


>gi|258570483|ref|XP_002544045.1| hypothetical protein UREG_03562 [Uncinocarpus reesii 1704]
 gi|237904315|gb|EEP78716.1| hypothetical protein UREG_03562 [Uncinocarpus reesii 1704]
          Length = 579

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 144/308 (46%), Gaps = 42/308 (13%)

Query: 28  LKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDV 79
           +     ++I  + L     +   + +ED L++ ++    A ++ E    EL+ K+     
Sbjct: 265 ISGLFRNVIGGKVLTKADLENPLKAMEDHLLKKNVAREAAVRLCEGVEQELVGKKTGSFQ 324

Query: 80  SVQRVLYDVSE-LIHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           S+   L    E  + K+L P            ++ P +   + RP+VI +VGVNGVGK+T
Sbjct: 325 SIDAALRSAMESSLQKILTPTSSLDLLREIEAVTSPHDRQQARRPYVISIVGVNGVGKST 384

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEIGS 176
            + K+   +     KV++AA DTFRS A++QL++ A               +      G 
Sbjct: 385 NLSKICFFLLQNNYKVLIAACDTFRSGAVEQLRVHARNLKELSERENVGHIELYEKGYGK 444

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           DAA +A +A   A +   DV++IDTAGR HN+  LM+ + K  +        AP  +  V
Sbjct: 445 DAANVAKDAVAYAASSNFDVVLIDTAGRRHNDQRLMSSLEKFAKF------AAPDKIFMV 498

Query: 237 LDATTGQNALRQVEMFHAVA----GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGV 291
            +A  G +++ Q   F+       G  G I++K D      G L+ +V    IP+ FLGV
Sbjct: 499 GEALVGTDSVMQARNFNQAFGTGRGLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGV 558

Query: 292 GEGINDLE 299
           G+   DL 
Sbjct: 559 GQHYGDLR 566


>gi|195479500|ref|XP_002100909.1| Gtp-bp [Drosophila yakuba]
 gi|194188433|gb|EDX02017.1| Gtp-bp [Drosophila yakuba]
          Length = 617

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 81/329 (24%), Positives = 139/329 (42%), Gaps = 45/329 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
            S    L      I+ ++ +         E++ D LI  ++   +A K+ + + T    K
Sbjct: 294 KSKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISKNVATEIAAKLCDSVATSLDGK 353

Query: 78  DVSVQRVL-YDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V E + + L+ +  P               + RP+ I+  GVNGVGK+T
Sbjct: 354 QMGTFDSIASQVKEALTQSLVRILSPKRRIDIIRDALESKRNGRPYTIIFCGVNGVGKST 413

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+   + +    V++AA DTFR+ A++QL+      +                    
Sbjct: 414 NLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHPAAKHDGRTMVQLYEKG 473

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA K A   +VDV+++DTAGR+ +N  LM  + K+I+V      + P  V
Sbjct: 474 YGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSLSKLIKV------NNPDLV 527

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTH 282
           L V +A  G  A+ Q+  F+                G+++TK D    + G  I +    
Sbjct: 528 LFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYIT 587

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             P+ F+G G+   DL+          + 
Sbjct: 588 GQPIVFVGTGQTYADLKAINVNAVVNSLM 616


>gi|27573159|gb|AAO19979.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 311

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 112/199 (56%), Gaps = 2/199 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   +    G  A A+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQATGDSA-AVCFDA 290

Query: 186 FKQAQAKKVDVLIIDTAGR 204
            + A+A+ +D+++ DTAGR
Sbjct: 291 VQAAKARGIDIVLADTAGR 309


>gi|302753916|ref|XP_002960382.1| hypothetical protein SELMODRAFT_75660 [Selaginella moellendorffii]
 gi|300171321|gb|EFJ37921.1| hypothetical protein SELMODRAFT_75660 [Selaginella moellendorffii]
          Length = 633

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 82/328 (25%), Positives = 133/328 (40%), Gaps = 44/328 (13%)

Query: 28  LKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQ 82
                  +     L+        + L+D L+  ++   +A+KI E +      K + +  
Sbjct: 305 FSSVFQSVTGKAALEKADLVPAMKALKDRLMTKNVAEEIAEKICESVAASLLGKKLGTFT 364

Query: 83  RVLYDVSELIHKMLMPLSKPFN----------WDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           RV   V E +   L+ +  P                 RP+VI+ VGVNGVGK+T + K++
Sbjct: 365 RVSSAVKEAMGDALLRILTPKRSIDILRDVKSAKDEGRPYVIVFVGVNGVGKSTSLAKVA 424

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             +    L V++AA DTFRS A++QL+  A R            D A +A EA   A   
Sbjct: 425 YWLKSHELSVLIAACDTFRSGAVEQLRTHAKRLQTTLYEKGYEKDPANVAREAIATAAKT 484

Query: 193 KVDVLIIDTAGRLH-----------------NNSILMAGIGKMIRVLKR-LDPHAPHSVL 234
           K DV+++DTAGR+                             ++R L   ++ + P  VL
Sbjct: 485 KHDVVLVDTAGRMQASFSKLCFSLFSLRSYNTYVFFFQDNEPLMRALANLINVNKPDLVL 544

Query: 235 QVLDATTGQNALRQVEMFHAVA----------GTTGLIMTKMDG-TARGGGLIPIVVTHK 283
            V +A  G  A+ Q+  F+                G+++TK D    + G  + +V    
Sbjct: 545 FVGEALVGNEAVDQLSKFNQTLADLSATAKRKPIDGILLTKFDTIDDKVGAALSMVYVSG 604

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            P+ FLG G+  +DL     K     + 
Sbjct: 605 APIMFLGCGQSYHDLRRLNVKSIIKTLL 632


>gi|146296300|ref|YP_001180071.1| GTP-binding signal recognition particle [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409876|gb|ABP66880.1| GTP-binding signal recognition particle SRP54, G- domain
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 370

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 142/314 (45%), Gaps = 35/314 (11%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDI--------ISSRRLDDGVREELEDLLIRSDIGVA 61
            LS I++L K   S    +KE I D         +S +   D +RE L+        GV 
Sbjct: 77  QLSQIKELEKKIDSLEKTIKEVIKDTNIIPEVKEVSKKNFLDVMRENLKKN------GVE 130

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVN 120
             ++IVE LL K    D S+  ++ ++ + I  +L     P       + P V+  VG  
Sbjct: 131 --EEIVEGLLAK-VNWDGSINNMVNNMYKEIKNILG---TPVTLSLDSKQPQVVFFVGPT 184

Query: 121 GVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           GVGKTT I K++ K+    G KV     DT+R AA++QLK +A+  +          +  
Sbjct: 185 GVGKTTTIAKIAAKLMFEEGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEVDEYD 244

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +             DV+++DTAGR H N   M  +   +         +P  V  +L A
Sbjct: 245 QIIK------SFDDSDVVLVDTAGRSHKNQEHMDELRAFVE------KASPDEVFLLLSA 292

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298
           TT  +  +++   ++      +I+TK+D  +  G ++ I    + P+ ++  G+ + +D+
Sbjct: 293 TTQPSVFKEIVNTYSFIDNYKVIITKVDEVSTYGNILNIKHYTQKPIAYVTTGQNVPDDI 352

Query: 299 EPFVAKDFSAVITG 312
           + F  + F+ +I G
Sbjct: 353 QQFNPEHFAKLIIG 366


>gi|170094140|ref|XP_001878291.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646745|gb|EDR10990.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 664

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 141/337 (41%), Gaps = 53/337 (15%)

Query: 22  ASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           AS+   L      +  S+ L +     V E ++  L++ ++ + +A K+ E +      +
Sbjct: 332 ASSLGPLGSLFARLTGSKVLTEADLKPVLEGMKQHLMKKNVAMEIADKVCENVGENLVGR 391

Query: 78  DVSVQRVL------------------YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            V   +                       ++L+  +   LS P        P+ I  VGV
Sbjct: 392 KVGGFQTTSAAVHLALSTSLTRILTPKTSTDLLLSIRNKLSSPLPSTQRRVPYSITFVGV 451

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------------- 166
           NGVGK+T + K+   +   GL+V++AA DTFRS A++QL++     S             
Sbjct: 452 NGVGKSTNLSKVCFWLIQNGLRVLIAACDTFRSGAVEQLRVHVRNLSMLGVDGATNSKSR 511

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            +      G DAA +A EA   AQ    DV++IDTAGR+ +N  LM  + K++ V     
Sbjct: 512 VELFERGYGKDAAGIAREAIGYAQENDFDVVLIDTAGRMQDNEPLMRALAKLVAV----- 566

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVA-----------GTTGLIMTKMDG-TARGGG 274
            + P  ++ V +A  G  A+ Q+  F               G  G+++TK D    + G 
Sbjct: 567 -NNPDKIIFVGEALVGNEAVDQLTKFDRALRDFSSVSGRSRGIDGMLVTKWDTVDDKVGA 625

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            + +      P+ F+G G+   DL      +    I 
Sbjct: 626 ALSMTYVTGQPIIFVGCGQTYTDLRQLRVANVVEAIL 662


>gi|301117886|ref|XP_002906671.1| signal recognition particle receptor subunit alpha [Phytophthora
           infestans T30-4]
 gi|262108020|gb|EEY66072.1| signal recognition particle receptor subunit alpha [Phytophthora
           infestans T30-4]
          Length = 549

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 82/323 (25%), Positives = 145/323 (44%), Gaps = 38/323 (11%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDGVREELE-------DLLIRSDIGVAVAQKIVEEL 70
           ++G++ +  +L   ++ +  ++ L+   RE+LE        +LI  ++   VA ++ E +
Sbjct: 235 SQGWSFSKTRLGNFLSTVSGNKILE---REDLEPVITPMHQMLISKNVASEVADELCESV 291

Query: 71  LTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGV 119
           +T    + + S  R+   V + +   L+ +  P                 R + I+ VGV
Sbjct: 292 ITTVVGQRLESFTRISTVVRKALEAALLRILTPKKSTDVLREILQAKSEGRAYSIVFVGV 351

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGK+T + K+   +   G+ VM+AA DTFRS A++QL   A     +        D A
Sbjct: 352 NGVGKSTSLSKVCYYLKSKGVNVMIAACDTFRSGAVEQLNQHAKVLDVELFQKGYAKDPA 411

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           ++A EA K       D ++IDTAGR+ NN  LM  + K++        + P  VL V +A
Sbjct: 412 SVAKEAIKYGTENGYDCVLIDTAGRMQNNEPLMRALAKLVSN------NEPDLVLFVGEA 465

Query: 240 TTGQNALRQVEMFHAVA----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYF 288
             G + + Q+ MF                 G+++TK D    + G  + +V     P+ F
Sbjct: 466 LVGNDGIDQLSMFDRALADYSDRREPHRIDGIVVTKFDTIDDKVGAAVSMVYKTGQPIMF 525

Query: 289 LGVGEGINDLEPFVAKDFSAVIT 311
           +G G+    L+    +     + 
Sbjct: 526 VGTGQKYTHLKKLNVRTVMRHLL 548


>gi|195174297|ref|XP_002027915.1| GL27063 [Drosophila persimilis]
 gi|194115604|gb|EDW37647.1| GL27063 [Drosophila persimilis]
          Length = 610

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/345 (24%), Positives = 142/345 (41%), Gaps = 53/345 (15%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S +   S     ++K  +G       L      I+  + +         D LI  ++   
Sbjct: 283 SEEDNVSSQSPALKKNKRG-----GGLVSYFRGIVGGKIICA-------DHLISKNVASE 330

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMP------LSKPFNWDFSHR 110
           +A K+ + + T    K V     +  + +      + ++L P      +        S +
Sbjct: 331 IAVKLCDSVATSLEGKQVGTFDSVASLVKEALTQSLVRILSPKRRIDIIRDALESKRSGK 390

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS---- 166
           P+ I+  GVNGVGK+T + K+   + +    V++AA DTFR+ A++QL+      +    
Sbjct: 391 PYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHP 450

Query: 167 ---------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
                            G DAA +A EA K A   KVDV+++DTAGR+ +N  LM  + K
Sbjct: 451 PANHNNRTMVQLYEKGYGKDAAGIAMEAIKFAHETKVDVVLVDTAGRMQDNEPLMRSLSK 510

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMD 267
           +I+V      + P  VL V +A  G  A+ Q+  F+                G+++TK D
Sbjct: 511 LIKV------NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFD 564

Query: 268 G-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
               + G  I +      P+ F+G G+   DL+          + 
Sbjct: 565 TIDDKVGAAISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLM 609


>gi|328865257|gb|EGG13643.1| signal recognition particle receptor alpha subunit [Dictyostelium
           fasciculatum]
          Length = 607

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/292 (29%), Positives = 138/292 (47%), Gaps = 29/292 (9%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-----SELIHKMLM 97
           + V ++    L   ++ + +A+K+VE + +    K +S  + +  V      E + ++L 
Sbjct: 321 EPVLQKFVGHLTSKNVALDIAEKLVESIGSSLEGKKLSTFQGVTTVVKTAMEESLTRILT 380

Query: 98  P-----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           P     + K        RP+ I+  GVNGVGK+T + K+   +   G +VMLAA DTFRS
Sbjct: 381 PKKHIDILKDIQLLKGSRPYAIVFSGVNGVGKSTNLAKVCYWLKANGHRVMLAACDTFRS 440

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            AI+QL   A R   +      G DAA++A +A + A+  K DV++IDT GR+ NN  LM
Sbjct: 441 GAIEQLGTHAARLDVELFERGYGKDAASIAGDAIEYARQTKHDVVLIDTTGRMQNNEPLM 500

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG------------TTG 260
             + K++      + +    VL V +A  G + + Q+  F                   G
Sbjct: 501 RALSKLV------NQNTIDLVLFVGEALVGNDGVDQLTKFDKSLSLLSDASKNNVRTIDG 554

Query: 261 LIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +I+TK D    + G  I +V +   P+ FLG G+   DL+    K     + 
Sbjct: 555 IILTKFDTIDDKVGAAISMVYSTGHPIIFLGTGQNYTDLKRMNVKTVVKTLL 606


>gi|154277597|ref|XP_001539638.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150413223|gb|EDN08606.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 651

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 143/313 (45%), Gaps = 42/313 (13%)

Query: 23  STSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVE----ELLTKR 74
           S+   +     +I+  + L     D   + +E+ L++ ++    A ++ +    EL+ K+
Sbjct: 332 SSLGAISGLFRNIVGGKVLTKADLDKPLKAMEEHLLKKNVAREAAVRLCDGVEQELIGKK 391

Query: 75  YAKDVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNG 121
                S+   L    E  + K+L P            ++ P N     RP+VI +VGVNG
Sbjct: 392 TGSFQSIDAALRAAMESSLRKILTPTSSLDLLREIEAVTSPSNSQKQRRPYVISIVGVNG 451

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVC 171
           VGK+T + K+   +     +V++AA DTFRS A++QL++ A               +   
Sbjct: 452 VGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVEQLRVHARNLKELSARENVGQVELYE 511

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G DAA +A +A   A     DV++IDTAGR HN+  LM+ + K  +         P 
Sbjct: 512 KGYGKDAANVAKDAVAYAAVNNFDVVLIDTAGRRHNDQRLMSSLEKFAKF------AQPD 565

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPV 286
            +  V +A  G +++ Q   F+   G      G IM+K D      G L+ +V    IP+
Sbjct: 566 KIFMVGEALVGTDSVMQARNFNQAFGTGRKLDGFIMSKCDTVGDMVGALVSMVHATGIPI 625

Query: 287 YFLGVGEGINDLE 299
            FLG+G+   DL 
Sbjct: 626 VFLGIGQHYGDLR 638


>gi|332372748|gb|AEE61516.1| unknown [Dendroctonus ponderosae]
          Length = 623

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/319 (26%), Positives = 140/319 (43%), Gaps = 45/319 (14%)

Query: 32  ITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-Y 86
              ++ S+ L     +   E+++D LI  ++   +A K+ + +  K   K +     +  
Sbjct: 310 FKGLVGSKNLTLADVNPALEKMKDHLIAKNVASDIAIKLCDSVAAKLEGKVLGTFDSVAT 369

Query: 87  DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            V   +   L+ +  P               + RP V+   GVNGVGK+T + K+   + 
Sbjct: 370 IVKNTLTDSLVQILSPNRRVDILRDCLEAKKNRRPFVMSFCGVNGVGKSTNLSKICFWLI 429

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAAALAY 183
           +  L+V++AA DTFR+ A++QL+      +                     G DAA +A 
Sbjct: 430 ENDLQVLIAACDTFRAGAVEQLRTHMRHLNALHPPDRHGGKQMVQLYEKGYGKDAAGIAM 489

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA K A+  KVDV++IDTAGR+ +N  LM  + K+I+V      + P  VL V +A  G 
Sbjct: 490 EAIKFARDTKVDVVLIDTAGRMQDNEPLMRALTKLIKV------NEPDLVLFVGEALVGN 543

Query: 244 NALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVG 292
            A+ Q+  F+                G+++TK D    + G  I +      P+ F+G G
Sbjct: 544 EAVDQLVKFNQALADYSANTNPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 603

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +   DL+    K     + 
Sbjct: 604 QTYTDLKALNVKAVVHSLM 622


>gi|261196279|ref|XP_002624543.1| signal sequence receptor alpha subunit [Ajellomyces dermatitidis
           SLH14081]
 gi|239587676|gb|EEQ70319.1| signal sequence receptor alpha subunit [Ajellomyces dermatitidis
           SLH14081]
 gi|239614635|gb|EEQ91622.1| signal sequence receptor alpha subunit [Ajellomyces dermatitidis
           ER-3]
 gi|327356628|gb|EGE85485.1| signal sequence receptor alpha subunit [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 650

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 42/313 (13%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVE----ELLTKR 74
           S+   +     +I+  + L     E+    +E+ L++ ++    A ++ +    EL  K+
Sbjct: 331 SSLGAISGLFRNIVGGKVLTKADLEKPLKAMEEQLLKKNVAREAAIRLCDGVEKELTGKK 390

Query: 75  YAKDVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNG 121
                S+   L    E  + K+L P            ++ P +     RP+VI +VGVNG
Sbjct: 391 TGNFQSIDSALRTAMESSLRKILTPTSSLDLLREIEAVTSPSSTQKQRRPYVISIVGVNG 450

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVC 171
           VGK+T + K+   +     +V++AA DTFRS A++QL++ A               +   
Sbjct: 451 VGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVEQLRVHARNLKELSARENVGHVELYE 510

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G DAA +A +A     A   DV++IDTAGR HN+  LM+ + K  +         P 
Sbjct: 511 KGYGKDAANVAKDAVSYGAANNFDVILIDTAGRRHNDQRLMSSLEKFAKF------AQPD 564

Query: 232 SVLQVLDATTGQNALRQVEMFHAVA----GTTGLIMTKMDGTARG-GGLIPIVVTHKIPV 286
            +  V +A  G +++ Q   F+       G  G I++K D      G L+ +V    IP+
Sbjct: 565 KIFMVGEALVGTDSVMQARNFNQAFGAGRGLDGFIISKCDTVGDMVGTLVSMVHATGIPI 624

Query: 287 YFLGVGEGINDLE 299
            FLGVG+   DL 
Sbjct: 625 VFLGVGQHYGDLR 637


>gi|310791224|gb|EFQ26753.1| SRP54-type protein [Glomerella graminicola M1.001]
          Length = 663

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 142/322 (44%), Gaps = 42/322 (13%)

Query: 26  LKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-- 79
             +     +++  + L     ++    +E+ L++ ++    A ++ E +  +        
Sbjct: 345 STIGGLFRNVVGGKTLTKADLDKAMKGMEEHLLKKNVAREAAVRLCEGVEKELLGVKTGS 404

Query: 80  --SVQRVLYDVSEL-IHKMLMPLSK-------------PFNWDFSHRPHVILVVGVNGVG 123
             S+   +    E  + KML P S              P       RP+VI +VGVNGVG
Sbjct: 405 FESINAKIQAAMEASLTKMLTPTSSLDLLREIDAITAPPATSLRRARPYVISIVGVNGVG 464

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---------SADFVCSEI 174
           K+T + K+   +     KV++AAGDTFRS A++QL +                +      
Sbjct: 465 KSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQLAVHVRNLKELTVREGGHVELYQKGY 524

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A +A   A  +  DV++IDTAGR HN+  LM+ + K  +         P  +L
Sbjct: 525 GKDAATVARDAVSHAAQEGFDVVLIDTAGRRHNDQRLMSSLEKFAKF------AQPDKIL 578

Query: 235 QVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFL 289
            V +A  G +++ Q   F+A  G      G I++K D      G L+ +V    +PV F+
Sbjct: 579 MVGEALVGTDSVAQARNFNAAFGAVRTLDGFIISKCDTVGNMVGTLVSLVHATNVPVLFV 638

Query: 290 GVGEGINDLEPFVAKDFSAVIT 311
           GVG+  +DL  F  K     + 
Sbjct: 639 GVGQHYSDLRNFSVKWAVEKLL 660


>gi|255723319|ref|XP_002546593.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240130724|gb|EER30287.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 539

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 146/300 (48%), Gaps = 32/300 (10%)

Query: 38  SRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSELIHKM 95
              +D + V ++  D L+  +I    +++I+E++  K    K V++      +++ + K+
Sbjct: 245 GGSIDLNEVSKQFNDQLMSKNIAPGTSKQIIEKIKNKLSGNKKVTMSMYKQALTDELTKI 304

Query: 96  LMPLSK-------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           L P            N + + RP+VI VVGVNGVGK+T + KL+  +      V++ A D
Sbjct: 305 LTPNVSTDLLHDIKRNAETNTRPYVISVVGVNGVGKSTNLAKLAYWLLQNNFNVLICACD 364

Query: 149 TFRSAAIDQLKIWADRTS----------ADFVCSEIGSDAAAL--AYEAFKQAQAKKVDV 196
           TFRS A++QLK+  +  +           D      GS    +  A +A + A   K D+
Sbjct: 365 TFRSGAVEQLKVHVNNLNRLNENSENSKIDLFEKGYGSGDHVVQTAKQAIQYATDHKFDI 424

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDTAGR H+N+ LMA + K        D   P+ ++ V +A  G +++ Q   F+   
Sbjct: 425 VLIDTAGRTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGTDSVEQAINFNNAF 478

Query: 257 G----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G        I++K+D      G +I +V+  K+P+ F+G G+   D++    K    ++ 
Sbjct: 479 GNKRSLDFFIISKVDTVGDLVGTMINMVMATKVPILFVGTGQTYTDIKRLSVKQVVEMLM 538


>gi|212526426|ref|XP_002143370.1| signal sequence receptor alpha subunit, putative [Penicillium
           marneffei ATCC 18224]
 gi|210072768|gb|EEA26855.1| signal sequence receptor alpha subunit, putative [Penicillium
           marneffei ATCC 18224]
          Length = 645

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 140/308 (45%), Gaps = 42/308 (13%)

Query: 28  LKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAKD----V 79
           +     +I+  + L +   E+    +ED L++ ++    A ++ E +  +   K      
Sbjct: 331 IGGLFRNIVGGKTLTEEDLEKPLKAMEDHLMKKNVAREAALRLCEGVKQELVGKKTANFQ 390

Query: 80  SVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           SV   L    E  + K+L P            ++ P     + RP+VI +VGVNGVGK+T
Sbjct: 391 SVDAALRTAMEASLRKILTPTSSLDLLHEIQAVTAPIAKGQAPRPYVISIVGVNGVGKST 450

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEIGS 176
            + K+   +     +V++AA DTFRS A++QL++                 +      G 
Sbjct: 451 NLSKICFFLLQNNYRVLVAACDTFRSGAVEQLRVHVRNLTELSARENIGEVELYEKGYGK 510

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           DAA +A +A     A K DV++IDTAGR HN+  LM+ + K  +         P  +  V
Sbjct: 511 DAANVAKDAVAYGAANKFDVVLIDTAGRRHNDQRLMSSLEKFAKFAN------PDKIFMV 564

Query: 237 LDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGV 291
            +A  G +++ Q   F+   G      G I++K D      G L+ +V    IP+ FLGV
Sbjct: 565 GEALVGTDSVMQARNFNQAFGSGRNLDGFIISKCDTVGDMVGTLVSMVHATSIPIVFLGV 624

Query: 292 GEGINDLE 299
           G+   DL 
Sbjct: 625 GQHYGDLR 632


>gi|301299298|ref|ZP_07205584.1| signal peptide binding domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853142|gb|EFK80740.1| signal peptide binding domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 345

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 6/173 (3%)

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           + A D +R AAIDQLKI             +  D   +  +  ++A+ KK D +IIDTAG
Sbjct: 1   MIAADVYRPAAIDQLKILGKDIDVPVFSLGVDVDPVEIVRQGLEEAKDKKNDYVIIDTAG 60

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RL  +  LM  +  +  +        P  +L  +DA TGQNA+   + F+     TG+++
Sbjct: 61  RLQIDEKLMQELSSIKEL------AQPDEILLTVDAMTGQNAVEVAKGFNDQLDVTGVVL 114

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           TK+DG  RGG  + I      P+ F+G GE + DL+ F     ++ I G  D 
Sbjct: 115 TKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMTDLDVFYPDRMASRILGMGDM 167


>gi|209882278|ref|XP_002142576.1| signal recognition particle receptor subunit alpha [Cryptosporidium
           muris RN66]
 gi|209558182|gb|EEA08227.1| signal recognition particle receptor subunit alpha, putative
           [Cryptosporidium muris RN66]
          Length = 519

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 143/299 (47%), Gaps = 26/299 (8%)

Query: 33  TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD----- 87
            + I ++ +     ++L+  LI  ++   +A+ I++ +        V       +     
Sbjct: 226 NNTIITKDIIYNPLQDLKSRLIGKNVAPEIAEDIIQSINKTLIGVKVQGGFTKLNTILDN 285

Query: 88  -VSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG- 139
            + + I ++L P      L++  +     + + I+ +GVNGVGK+T + K+   + + G 
Sbjct: 286 CLRDTITRILSPKRIIDVLNEAIDAKRHGQIYSIVFLGVNGVGKSTNLAKVCYYLKNKGN 345

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
           LKVM+ A DTFR+ AI+QLK  A+           G DAA +A +A   A+  K D+++I
Sbjct: 346 LKVMIVACDTFRAGAIEQLKTHANCLDVYLYERGYGKDAAFIAKDAILYAKENKYDIVLI 405

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--- 256
           DTAGR+ +N  LM  + K++ +      + P+ V+ V +A  G +A+ Q++ F+      
Sbjct: 406 DTAGRMQDNVPLMKSLAKLVMI------NNPNLVIFVGEALVGNDAVNQLQTFNKFLIDH 459

Query: 257 ---GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                 G+++TK D    + G  + +V +   P+ F+G G+   +L           I 
Sbjct: 460 ANRPIDGILLTKFDTVDDKIGAALSMVYSTGQPIIFIGTGQKYFNLRTLPVSTVVNSIF 518


>gi|255946073|ref|XP_002563804.1| Pc20g13240 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588539|emb|CAP86653.1| Pc20g13240 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 646

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 42/310 (13%)

Query: 26  LKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAKD--- 78
             +     +I+  + L +   E+    +ED L++ ++    A ++ E +  +   K    
Sbjct: 330 NAIGGFFRNIVGGKVLTESDLEKPLKAMEDHLLKKNVAREAAVRLCEGVKREMIGKKTGN 389

Query: 79  -VSVQRVLYDVSEL-IHKMLMPLSK------------PFNWDFSHRPHVILVVGVNGVGK 124
             S    L+   E  + K+L P S             P     + RP+V+ +VGVNGVGK
Sbjct: 390 FQSTDAALHVAMESSLRKILTPTSSLDLLREINAVVAPTTKQQAPRPYVMSIVGVNGVGK 449

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEI 174
           +T + K+   +     +V++AA DTFRS A++QL++ ADR             +      
Sbjct: 450 STNLSKICYFLLQNKYRVLIAACDTFRSGAVEQLRVHADRLKELSVRENAGDVEIYQKGY 509

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A +A   A A K DV++IDTAGR HN+  LM+ + K  +         P  + 
Sbjct: 510 GKDAANVAKDAVDYAAANKFDVVLIDTAGRRHNDQRLMSSLEKFAKFAN------PDKIF 563

Query: 235 QVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFL 289
            V +A  G +++ Q   F+   G      G I++K D      G L+ +V    IP+ FL
Sbjct: 564 MVGEALVGTDSVMQARNFNQAFGTGRNLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFL 623

Query: 290 GVGEGINDLE 299
           GVG+   DL 
Sbjct: 624 GVGQHYGDLR 633


>gi|327309164|ref|XP_003239273.1| signal sequence receptor alpha subunit [Trichophyton rubrum CBS
           118892]
 gi|326459529|gb|EGD84982.1| signal sequence receptor alpha subunit [Trichophyton rubrum CBS
           118892]
          Length = 650

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 141/308 (45%), Gaps = 42/308 (13%)

Query: 28  LKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           +     +++  + L +       + +ED L++ ++    A ++ E +  +   K  +  +
Sbjct: 336 ISSLFRNVVGGKVLTEADLVKPLKAMEDHLLKKNVACEAAVRLCEGVQKELVGKKTASFQ 395

Query: 84  VLYD-----VSELIHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +       +   + K+L P            ++ P N     RP+VI VVGVNGVGK+T
Sbjct: 396 SIDSALRAGMESSLRKILTPTTSLDLLREIEVVTSPMNQQQPRRPYVISVVGVNGVGKST 455

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEIGS 176
            + KL   +     KV++AA DTFRS A++QL++ A               +      G 
Sbjct: 456 NLSKLCFFLLQNKYKVLIAACDTFRSGAVEQLRVHARNLKELSARENAGHVELYEKGYGK 515

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           DAA +A +A   A +   +V++IDTAGR HN+  LM+ + K  +         P  +L V
Sbjct: 516 DAANVAKDAVAYAASNDFEVVLIDTAGRRHNDQRLMSSLEKFAKFAN------PDKILMV 569

Query: 237 LDATTGQNALRQVEMFHAVA----GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGV 291
            +A  G +++ Q   F+       G  G I++K D      G L+ +V    IP+ FLGV
Sbjct: 570 GEALVGTDSVMQARNFNQAFGPGRGLDGFIISKCDTVGDMVGTLVSMVHATGIPIVFLGV 629

Query: 292 GEGINDLE 299
           G+   DL 
Sbjct: 630 GQHYGDLR 637


>gi|156088505|ref|XP_001611659.1| SRP54-type protein, GTPase domain containing protein [Babesia
           bovis]
 gi|154798913|gb|EDO08091.1| SRP54-type protein, GTPase domain containing protein [Babesia
           bovis]
          Length = 566

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 135/295 (45%), Gaps = 33/295 (11%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-----YDVSELIHKMLM 97
           +   +EL+  L   ++   ++  I + +      K  +  + +       + + + ++L 
Sbjct: 278 EEPLKELKLNLNTKNVANDISTMICDSISAGLVGKKTASLKSVSATVREALEDAVRRILT 337

Query: 98  PLSKPFNW-------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           P  +P N              + +L +GVNGVGK+T + K++  +   G KVML A DTF
Sbjct: 338 P-KEPINLLRNVSEAKARGEVYSVLFLGVNGVGKSTSLAKVTYLLKCNGFKVMLIACDTF 396

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           RS A++QLKI AD+   +      G D +A+  E  K A+A   D ++IDTAGR+ +N  
Sbjct: 397 RSGAVEQLKIHADKLGVELFERGYGKDPSAICREGLKHARANSYDAVLIDTAGRMQDNEP 456

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA-------------G 257
           LM  + K+I V      + PH +L V +A  G +A+ Q+  F+                 
Sbjct: 457 LMTALAKLIHV------NNPHLLLFVGEALVGNDAVDQLRKFNQAIQKMGDSSDELRGRK 510

Query: 258 TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             G+++TK D    + G  + +      PV F+G G+   +L      D    +T
Sbjct: 511 IDGIVLTKFDTVDDKVGAALSMCYITGQPVVFVGTGQTYTNLAKLEIDDVVRALT 565


>gi|190346780|gb|EDK38947.2| hypothetical protein PGUG_03045 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 529

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 30/313 (9%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           S        I+         D V +   D  I  +I  A A+ I ++L  +   K V+++
Sbjct: 222 SKKSGFFGKISSYFGGPIDLDEVSKTFTDQFISKNIAPATAKTITDKLNHELKGKKVTLK 281

Query: 83  RVLYDVSELIHKMLMP-LSKPFNWDFSH-------RPHVILVVGVNGVGKTTVIGKLSKK 134
                ++  + K+L P +S    +D          RP+VI VVGVNGVGK+T + KL+  
Sbjct: 282 DYKRALTVELTKILTPNVSTDLLYDVKRNSSTSNSRPYVISVVGVNGVGKSTNLAKLAYW 341

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---------SADFVCSEIGSDAAALAYE- 184
                L V++ A DTFRS A++QLK+  +             D      G     +A   
Sbjct: 342 FLQNNLNVLICACDTFRSGAVEQLKVHVNNLKRLNTTTNTKIDIFEKGYGGGDHVVATAK 401

Query: 185 -AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A + A A+  D+++IDTAGR H+N+ LMA + K        D   P+ ++ V +A  G 
Sbjct: 402 SAIEFAGAEGFDIVLIDTAGRTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGT 455

Query: 244 NALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
           +++ Q   F+   G        I++K+D      G +I +V+  K+P+ F+G G+   D+
Sbjct: 456 DSVEQAVNFNNAFGNRRSLDFFIISKVDTVGDLVGSMINMVMATKVPILFVGTGQVYTDI 515

Query: 299 EPFVAKDFSAVIT 311
           +    K     + 
Sbjct: 516 KRLSVKSVVDALM 528


>gi|241956007|ref|XP_002420724.1| signal recognition particle (SRP) receptor subunit alpha, putative
           [Candida dubliniensis CD36]
 gi|223644066|emb|CAX41809.1| signal recognition particle (SRP) receptor subunit alpha, putative
           [Candida dubliniensis CD36]
          Length = 535

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 86/319 (26%), Positives = 149/319 (46%), Gaps = 37/319 (11%)

Query: 24  TSLKLKEGITDIIS---SRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKR-YAKD 78
           TS  +  G    I       ++ D V ++  + LI  +I    A  I++++ TK    K 
Sbjct: 222 TSGSVGNGFFSKIGSYLGGTINVDEVSKKFREQLISKNITPGTATTIIDKIKTKLSTNKK 281

Query: 79  VSVQRVLYDVSELIHKMLMPLSK-------PFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           V++      +++ + K+L P            N + + RP+VI VVGVNGVGK+T + KL
Sbjct: 282 VTMAVYKQALTDELTKILTPNVSTDLLHDIKRNAELNTRPYVISVVGVNGVGKSTNLAKL 341

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------------ADFVCSEIGSDAA 179
           +       L V++ A DTFRS A++QLK+  +  +             D      GS   
Sbjct: 342 AFWFLQNNLNVLICACDTFRSGAVEQLKVHVNNLNRLNEASTNTKSRIDIFEKGYGSGDH 401

Query: 180 AL--AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            +  A +A + A     D+++IDTAGR H+N+ LMA + K        D  +P+ ++ V 
Sbjct: 402 VVQTAKQAIQYAGENNFDIVLIDTAGRTHSNAKLMAPLKKF------GDAASPNKIIMVG 455

Query: 238 DATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVG 292
           +A  G +++ Q   F+   G        I++K+D      G +I +V+   +P+ F+G G
Sbjct: 456 EALVGTDSVEQATNFNKAFGNKRTLDFFIISKVDTVGDLVGTMINMVMATNVPILFVGTG 515

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +   D++    K    ++ 
Sbjct: 516 QTYTDIKRLSVKQVVEMLM 534


>gi|154302571|ref|XP_001551695.1| hypothetical protein BC1G_09862 [Botryotinia fuckeliana B05.10]
 gi|150855351|gb|EDN30543.1| hypothetical protein BC1G_09862 [Botryotinia fuckeliana B05.10]
          Length = 660

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/330 (26%), Positives = 146/330 (44%), Gaps = 43/330 (13%)

Query: 19  KGFASTS-LKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVE----E 69
            G   +S   +     +++  + L     ++    +ED L+R ++    A ++ E    E
Sbjct: 334 AGLVGSSFSAIGGLFRNVVGGKTLTKEDLDKAMKGMEDHLLRKNVAREAAMRLCEGVERE 393

Query: 70  LLTKRYAKDVSVQRVLYDVSEL-IHKMLMP-------------LSKPFNWDFSHRPHVIL 115
           L+  +     SVQ  +    E  + K+L P             +S P       RP+V+ 
Sbjct: 394 LIGVKTGNFESVQTRIATAMEASLRKILTPTSSLDLLREIDSIVSPPALSLKKKRPYVMS 453

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---------S 166
           +VGVNGVGK+T + K+   +     KV++ A DTFRS A++QL +               
Sbjct: 454 IVGVNGVGKSTNLSKICYFLLQNKYKVLVVACDTFRSGAVEQLAVHVRNLKELTTREGGQ 513

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            +      G DAA +A ++   A  +  DV++IDTAGR HN+  LM+ + K  +      
Sbjct: 514 VELYQKGYGKDAANVAKDSVSFAAQEGYDVVLIDTAGRRHNDQRLMSSLEKFAKF----- 568

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVT 281
              P  +L V +A  G +++ Q   F+A  G      G I++K D      G L+ +V  
Sbjct: 569 -AQPDKILMVGEALVGTDSVAQARNFNAAFGQGRSLDGFIISKCDTVGDMVGTLVSMVHA 627

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             +PV F+GVG+  +DL     K     + 
Sbjct: 628 TNVPVLFVGVGQHYSDLRNLSVKWAVEKLM 657


>gi|194762610|ref|XP_001963427.1| GF20395 [Drosophila ananassae]
 gi|190629086|gb|EDV44503.1| GF20395 [Drosophila ananassae]
          Length = 628

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 137/319 (42%), Gaps = 45/319 (14%)

Query: 32  ITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY- 86
              I+ ++ +         E++ D LI  ++   +A K+ + + +    K +     +  
Sbjct: 315 FKGIVGAKTMSLAELQPALEKMRDHLISKNVAAEIAAKLCDSVASSLEGKQMGTFDSVAG 374

Query: 87  DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            V E + + L+ +  P               + RP+ I+  GVNGVGK+T + K+   + 
Sbjct: 375 QVKEALTQSLVRILSPKRRIDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLI 434

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAAALAY 183
           +    V++AA DTFR+ A++QL+      +                     G DAA +A 
Sbjct: 435 ENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHPATKHNGRTMVQLYEKGYGKDAAGIAM 494

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA K A   KVDV+++DTAGR+ +N  LM  + K+I+V      + P  VL V +A  G 
Sbjct: 495 EAIKFAHDTKVDVVLVDTAGRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGN 548

Query: 244 NALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVG 292
            A+ Q+  F+                G+++TK D    + G  I +      P+ F+G G
Sbjct: 549 EAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 608

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +   DL+          + 
Sbjct: 609 QTYADLKAINVTAVVNSLM 627


>gi|156398259|ref|XP_001638106.1| predicted protein [Nematostella vectensis]
 gi|156225224|gb|EDO46043.1| predicted protein [Nematostella vectensis]
          Length = 625

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 146/328 (44%), Gaps = 45/328 (13%)

Query: 23  STSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           +T+  +      +     L       V E++++ L   ++   +++K+ + + TK   K 
Sbjct: 302 NTNQSVFSFFKGLAGQSTLAKEQISPVLEKMKEHLTSKNVAADISEKLCDSVATKLEGKV 361

Query: 79  VSVQRVL-----YDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +     +       + E + ++L P      L          +P+V+   GVNGVGK+T 
Sbjct: 362 IGTFSGIASTVKSSLEESLIQILSPKRRVDILRDAMENKRKGKPYVVTFCGVNGVGKSTN 421

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEI 174
           + K+   + +   +VM+AA DTFR+ A++QL+      +                     
Sbjct: 422 LAKVCFWLLENNFRVMIAACDTFRAGAVEQLRTHVRHLNALHPPAHANGPPSVLLYEKGY 481

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA++A +A   A+ ++VDV+++DTAGR+ +N  LM  + K+I++      + P  VL
Sbjct: 482 GKDAASIAMDAINFAREQRVDVVLVDTAGRMQDNEPLMRALSKLIKL------NDPDLVL 535

Query: 235 QVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHK 283
            V +A  G  A+ Q++ F+                G+++TK D    + G  I +  T  
Sbjct: 536 FVGEALVGNEAVDQLKKFNQALADHSSQDRPRLIDGILLTKFDTIDDQVGAAISMTYTTG 595

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            P+ F+G G+   DL+    K     + 
Sbjct: 596 QPIVFVGTGQTYKDLKSLNVKAVVHALL 623


>gi|225683852|gb|EEH22136.1| signal recognition particle receptor subunit alpha
           [Paracoccidioides brasiliensis Pb03]
          Length = 554

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 89/319 (27%), Positives = 146/319 (45%), Gaps = 43/319 (13%)

Query: 18  TKGFASTSLK-LKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVE---- 68
           + G   +SL  +     +I+  + L     D   + +E+ L++ ++    A ++ E    
Sbjct: 229 SNGLVGSSLGAISGLFRNIVGGKVLTKADLDKPLKAMEEHLLKKNVAREAAVRLCEGVVH 288

Query: 69  ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVIL 115
           EL+ K+ A   S+   L    E  + K+L P            ++ P +     RP+VI 
Sbjct: 289 ELVGKKTASFQSIDSALRSAMESSLRKILTPTSSLDLLREIEAVTSPSSSQRQRRPYVIS 348

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS--------- 166
           +VGVNGVGK+T + K+   +     +V++ A DTFRS A++QL++ A             
Sbjct: 349 IVGVNGVGKSTNLSKICFFLLQNNYRVLITACDTFRSGAVEQLRVHARNLQELSSRENVG 408

Query: 167 -ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                    G DAA +A +A   A A   DV++IDTAGR HN+  LM+ + K  +     
Sbjct: 409 HVGLYQKGYGKDAANVAKDAVAYATANSFDVVLIDTAGRRHNDQRLMSSLEKFAKF---- 464

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVA----GTTGLIMTKMDGTARG-GGLIPIVV 280
               P  +  V +A  G +++ Q   F+       G  G I++K D      G L+ +V 
Sbjct: 465 --AQPDKIFMVGEALVGTDSVMQARNFNQAFGAGRGLDGFIISKCDTVGDMVGTLVSMVH 522

Query: 281 THKIPVYFLGVGEGINDLE 299
              IP+ FLG+G+   DL 
Sbjct: 523 ATGIPIVFLGIGQHYGDLR 541


>gi|68468044|ref|XP_721861.1| hypothetical protein CaO19.3952 [Candida albicans SC5314]
 gi|46443803|gb|EAL03082.1| hypothetical protein CaO19.3952 [Candida albicans SC5314]
          Length = 535

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 148/313 (47%), Gaps = 33/313 (10%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRV 84
                 I+  +      D V ++  + LI  +I   +A  I++++ TK  A K V++   
Sbjct: 228 SGFFSKISSYLGGTINVDEVSKKFREQLITKNITPGIATTIIDKIKTKLSANKKVTMAVY 287

Query: 85  LYDVSELIHKMLMPLSK-------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
              +++ + K+L P            N + + RP+VI VVGVNGVGK+T + KL+     
Sbjct: 288 KQALTDELTKILTPNVSTDLLHDIKRNAELNTRPYVISVVGVNGVGKSTNLAKLAFWFLQ 347

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTS------------ADFVCSEIGSDAAAL--AY 183
             L V++ A DTFRS A++QLK+  +  +             D      GS    +  A 
Sbjct: 348 NNLNVLICACDTFRSGAVEQLKVHVNNLNRLNEASTNTKSRIDIFEKGYGSGDHVVQTAK 407

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+  K D+++IDTAGR H+N+ LMA + K        D   P+ ++ V +A  G 
Sbjct: 408 QAVQYAEENKFDIVLIDTAGRTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGT 461

Query: 244 NALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
           +++ Q   F+   G        I++K+D      G +I +V+   +P+ F+G G+   D+
Sbjct: 462 DSVEQATNFNKAFGNKRTLDFFIISKVDTVGDLVGTMINMVMATNVPILFVGTGQTYTDI 521

Query: 299 EPFVAKDFSAVIT 311
           +    K    ++ 
Sbjct: 522 KRLSVKQVVEMLM 534


>gi|242010419|ref|XP_002425965.1| signal recognition particle receptor alpha subunit, putative
           [Pediculus humanus corporis]
 gi|212509956|gb|EEB13227.1| signal recognition particle receptor alpha subunit, putative
           [Pediculus humanus corporis]
          Length = 615

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/315 (24%), Positives = 140/315 (44%), Gaps = 39/315 (12%)

Query: 26  LKLKEGITDIISSR--RLDD--GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
             +      ++ S+   L+D   V ++L+D LI  ++   +A K+ + +  K   K +  
Sbjct: 310 KGMFSMFRGLVGSKALTLEDMSPVLDKLKDHLIAKNVAADIAGKLCDSVAVKLQGKILGT 369

Query: 82  QRVLYD-----VSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              +       ++E + ++L P      L   F      RP+V++  GVNGVGK+T + K
Sbjct: 370 FDRIATTVEATLNESLVQILSPRRRVDILRDAFEAKKQSRPYVMVFCGVNGVGKSTNLAK 429

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSD 177
           +   + +   +V++AA DTFR+ A++QL+      +                     G D
Sbjct: 430 ICFWLIENKFRVLIAACDTFRAGAVEQLRTHTRHLNALHPPEKNNNLQMVQLYEKGYGKD 489

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           AA +A EA   A+   +D++++DTAGR+ +N  LM  + K+I+V      ++P  V  V 
Sbjct: 490 AAGIAMEAIGYARDSNIDIVLVDTAGRMQDNEPLMKALAKLIKV------NSPDLVXXV- 542

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGIN 296
                  AL             G+++TK D    + G  I +      P+ F+G G+   
Sbjct: 543 ---KFNQALADFSQSINPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYT 599

Query: 297 DLEPFVAKDFSAVIT 311
           DL+   AK   + + 
Sbjct: 600 DLKSLNAKSVVSALM 614


>gi|146418701|ref|XP_001485316.1| hypothetical protein PGUG_03045 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 529

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 30/313 (9%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           S        I+         D V +   D  I  +I  A A+ I ++L  +   K V+++
Sbjct: 222 SKKSGFFGKISSYFGGPIDLDEVSKTFTDQFISKNIAPATAKTITDKLNHELKGKKVTLK 281

Query: 83  RVLYDVSELIHKMLMP-LSKPFNWDFSH-------RPHVILVVGVNGVGKTTVIGKLSKK 134
                ++  + K+L P +S    +D          RP+VI VVGVNGVGK+T + KL+  
Sbjct: 282 DYKRALTVELTKILTPNVSTDLLYDVKRNSSTSNSRPYVISVVGVNGVGKSTNLAKLAYW 341

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---------SADFVCSEIGSDAAALAYE- 184
                L V++ A DTFRS A++QLK+  +             D      G     +A   
Sbjct: 342 FLQNNLNVLICACDTFRSGAVEQLKVHVNNLKRLNTTTNTKIDIFEKGYGGGDHVVATAK 401

Query: 185 -AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A + A A+  D+++IDTAGR H+N+ LMA + K        D   P+ ++ V +A  G 
Sbjct: 402 LAIEFAGAEGFDIVLIDTAGRTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGT 455

Query: 244 NALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
           +++ Q   F+   G        I++K+D      G +I +V+  K+P+ F+G G+   D+
Sbjct: 456 DSVEQAVNFNNAFGNRRSLDFFIISKVDTVGDLVGSMINMVMATKVPILFVGTGQVYTDI 515

Query: 299 EPFVAKDFSAVIT 311
           +    K     + 
Sbjct: 516 KRLSVKSVVDALM 528


>gi|312792668|ref|YP_004025591.1| flagellar biosynthetic protein flhf [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179808|gb|ADQ39978.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 372

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 141/311 (45%), Gaps = 27/311 (8%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITD-----IISSRRL-DDGVREELEDLLIRSDIGVAVA 63
            ++ I++L K   S    LKE I       I  ++ L      + + + LI++ +   + 
Sbjct: 77  QMTQIKELEKKIDSLEKALKEVIKKEQEEGINQTKELSKKNFLDVMRENLIKNGVENEIV 136

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
             ++  L  +      S+  V+ ++ + I  ML   + P +++ S  P ++  VG  GVG
Sbjct: 137 DMLLSNLSAEA-----SINAVVNNMYKEIKNMLGA-AAPLSFN-SKFPKIVFFVGPTGVG 189

Query: 124 KTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT I K++ K+    G KV     DT+R AA++QLK +A+  +          +   + 
Sbjct: 190 KTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEVDEYDRII 249

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                       DV+++DTAGR H N   M  +   +          P  V  +L ATT 
Sbjct: 250 E------SFADSDVVLVDTAGRSHKNQEHMDELKAFVA------KANPDEVFLLLSATTQ 297

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301
            +  ++V   ++      +I+TK+D  +  G ++ I    + P+ ++  G+ + +D+E F
Sbjct: 298 PSVFKEVVNTYSFLDDYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTGQNVPDDIEQF 357

Query: 302 VAKDFSAVITG 312
             + F+ +I G
Sbjct: 358 NPEQFAKLIIG 368


>gi|195132635|ref|XP_002010748.1| GI21534 [Drosophila mojavensis]
 gi|193907536|gb|EDW06403.1| GI21534 [Drosophila mojavensis]
          Length = 636

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 82/319 (25%), Positives = 140/319 (43%), Gaps = 45/319 (14%)

Query: 32  ITDIISSRR--LDD--GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
              I+ ++   L+D     E++ D LI  ++   +A K+ + + T    K +     + +
Sbjct: 323 FKGIVGAKTMTLNDLQPALEKMRDHLISKNVASEIAAKLCDSVATSLEGKQMGTFDSIAN 382

Query: 88  -VSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            V E + + L+ +  P               + RP+ I+  GVNGVGK+T + K+   + 
Sbjct: 383 MVKEALTQSLVRILSPKRRIDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLI 442

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAAALAY 183
           +    V++AA DTFR+ A++QL+      +                     G DAA +A 
Sbjct: 443 ENDFSVLIAACDTFRAGAVEQLRTHTRHLNALHPAEKHKQRTMVQLYEKGYGKDAAGIAM 502

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA K A   KVDV+++DTAGR+ +N  LM  + K+I+V      + P  VL V +A  G 
Sbjct: 503 EAIKYAHDTKVDVVLVDTAGRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGN 556

Query: 244 NALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVG 292
            A+ Q+  F+                G+++TK D    + G  I +      P+ F+G G
Sbjct: 557 EAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 616

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +   DL+          + 
Sbjct: 617 QTYADLKAINVNAVVNSLM 635


>gi|330844238|ref|XP_003294039.1| hypothetical protein DICPUDRAFT_51281 [Dictyostelium purpureum]
 gi|325075556|gb|EGC29428.1| hypothetical protein DICPUDRAFT_51281 [Dictyostelium purpureum]
          Length = 572

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 139/304 (45%), Gaps = 33/304 (10%)

Query: 35  IISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL----- 85
           +  +R +D      + +  +  L + ++   +A K+VE + T    K +S  + +     
Sbjct: 274 LTGNRVIDKADLVPILDNFKTHLTKKNVAADIADKLVESIGTGLEGKKLSTFQGVSGVVK 333

Query: 86  YDVSELIHKMLMP-----LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
             + E I ++L P     + +        RP+ I+  GVNGVGK+T + K+   ++  G 
Sbjct: 334 QQMEETITRILTPKRNIDILREVQAVKGKRPYTIVFSGVNGVGKSTNLAKICYWLTANGY 393

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           + MLAA DTFRS AI+QLK  ADR            DAA +A +A  +A+   +DV++ID
Sbjct: 394 RCMLAACDTFRSGAIEQLKTHADRLGVPLYERGYSKDAANVAADAIAEAKDMGIDVVLID 453

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG--- 257
           T GR+ NN  L      M  + K ++ +    VL V +A  G + + Q+  F        
Sbjct: 454 TTGRMQNNEPL------MKALSKLVNQNNADLVLFVGEALVGNDGVDQLTKFDKSLSLLS 507

Query: 258 ---------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
                      G+I+TK D    + G  I +V +   P+ FLG G+   DL+    K   
Sbjct: 508 STTSSKIRTIDGIILTKFDTIDDKVGAAISMVYSTGHPILFLGTGQNYTDLKRMNIKSVV 567

Query: 308 AVIT 311
             + 
Sbjct: 568 KSLL 571


>gi|312876519|ref|ZP_07736502.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796730|gb|EFR13076.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 372

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 73/311 (23%), Positives = 138/311 (44%), Gaps = 27/311 (8%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITD-----IISSRRL-DDGVREELEDLLIRSDIGVAVA 63
            ++ I++L K   S    LKE I       I  ++ L      + + + LI++ +   + 
Sbjct: 77  QMTQIKELEKKIDSLEKALKEVIKKEQEEGINQTKELSKKNFLDVMRENLIKNGVENEIV 136

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
             ++  +  +     V     +  + + I  ML   + P +++ S  P ++  VG  GVG
Sbjct: 137 DMLLSNVSGEASINGV-----VNFMYKEIKNMLGA-AAPLSFN-SKFPKIVFFVGPTGVG 189

Query: 124 KTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT I K++ K+    G KV     DT+R AA++QLK +A+  +          +   + 
Sbjct: 190 KTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEVDEYDRII 249

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                       DV+++DTAGR H N   M  +   +          P  V  +L ATT 
Sbjct: 250 E------SFADSDVVLVDTAGRSHKNQEHMDELKAFVA------KANPDEVFLLLSATTQ 297

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301
            +  ++V   ++      +I+TK+D  +  G ++ I    + P+ ++  G+ + +D+E F
Sbjct: 298 PSVFKEVVNTYSFLDDYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTGQNVPDDIEQF 357

Query: 302 VAKDFSAVITG 312
             + F+ +I G
Sbjct: 358 NPEQFAKLIIG 368


>gi|221481269|gb|EEE19666.1| signal recognition particle protein, putative [Toxoplasma gondii
           GT1]
          Length = 588

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 92/323 (28%), Positives = 150/323 (46%), Gaps = 42/323 (13%)

Query: 7   ASESLSWIRKLTKGFAS-TSLKL--KEGITDIISSRRL---DDGVREELEDLLIRSDIGV 60
           A+ +  W R LT    S T  KL     I +++ + R    +  V EE+ DLL+ S    
Sbjct: 247 AAAASGWFRSLTSKLQSFTGNKLLTNADIAEVLPAFRAHLAEKNVAEEVIDLLLHS---- 302

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSK------PFNWDFSHRPHV 113
                +   L   R A   SV + +   + + I K+L P                 R   
Sbjct: 303 -----VQSRLKGTRTASFTSVHQTVRMAMRDAIVKILTPKKTVDVLRLALEAKAEGRVFS 357

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I+ +GVNGVGK+T + K++  +   G L V++AA DTFR+ A++QL+  +          
Sbjct: 358 IVFLGVNGVGKSTNLAKVAYYLKHKGNLDVLIAACDTFRAGAVEQLRTHSRCLQVPLFER 417

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAAA+A EA   A+ +  DV++IDTAGR+ +N  LM  + K++ +      ++P  
Sbjct: 418 GYGKDAAAIAREALATARQEGRDVVLIDTAGRMQDNEPLMRSLAKLVAM------NSPDM 471

Query: 233 VLQVLDATTGQNALRQVEMFHAVA------------GTTGLIMTKMDG-TARGGGLIPIV 279
           +L V +A  G +A+ Q++ F+                  G+I+TK D    + G  + +V
Sbjct: 472 ILFVGEALVGNDAVDQLKKFNQALVDLTALGGRPPRTVDGIILTKFDTVDDKVGAALSMV 531

Query: 280 VTHKIPVYFLGVGEGINDLEPFV 302
                PV F+G G+   +L+   
Sbjct: 532 YITGQPVVFVGTGQKYPNLKKLN 554


>gi|145642024|ref|ZP_01797596.1| Signal recognition particle protein [Haemophilus influenzae R3021]
 gi|145273295|gb|EDK13169.1| Signal recognition particle protein [Haemophilus influenzae
           22.4-21]
          Length = 329

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 6/172 (3%)

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           + + D +R AAI QL+  A     DF  S++  +   +A  A   A+ K  DVLI+DTAG
Sbjct: 1   MVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAKLKFYDVLIVDTAG 60

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RLH ++ +M  I ++   L       P   L  +DA TGQ+A    + F+     TG+I+
Sbjct: 61  RLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAKAFNEALPLTGVIL 114

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I G  D
Sbjct: 115 TKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGD 166


>gi|28493523|ref|NP_787684.1| cell division protein FtsY [Tropheryma whipplei str. Twist]
 gi|28572365|ref|NP_789145.1| SRP54-type protein [Tropheryma whipplei TW08/27]
 gi|28410496|emb|CAD66882.1| putative SRP54-type protein [Tropheryma whipplei TW08/27]
 gi|28476565|gb|AAO44653.1| cell division protein FtsY [Tropheryma whipplei str. Twist]
          Length = 222

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 89/210 (42%), Positives = 126/210 (60%), Gaps = 3/210 (1%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
               ++ P VIL+VGVNGVGKT   GKL+  +   G KV+LAA DTFR+AA++QL IWA 
Sbjct: 15  TLRLTNHPSVILIVGVNGVGKTATAGKLANLLHLRGKKVLLAAADTFRAAAVEQLSIWAQ 74

Query: 164 RTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           R   + +   +   D A++AY + K+A     DV++IDTAGRLHN + LMA + ++ RV 
Sbjct: 75  RAGVEIITPPKPRIDPASVAYSSVKKAIDDNYDVVVIDTAGRLHNKANLMAELERIARVT 134

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           ++L       VL VLDATTGQN L Q   F      TG++++K D +A+ G +  +  + 
Sbjct: 135 EKLVS--IDEVLLVLDATTGQNGLTQARSFLEAVSVTGIVLSKTDSSAKAGFIFQVQEST 192

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            +PV  +G GE I+D+  F    F A I G
Sbjct: 193 GVPVKLIGTGEAIDDIAGFAPYAFVAQIFG 222


>gi|260831512|ref|XP_002610703.1| hypothetical protein BRAFLDRAFT_202369 [Branchiostoma floridae]
 gi|229296070|gb|EEN66713.1| hypothetical protein BRAFLDRAFT_202369 [Branchiostoma floridae]
          Length = 629

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 79/331 (23%), Positives = 145/331 (43%), Gaps = 47/331 (14%)

Query: 22  ASTSLKLK--EGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +  S           ++  + +       V ++++D LI  ++   +A ++   + TK  
Sbjct: 304 SKKSSGFGVFNMFKGLVGQKTVTAEAMAPVLDKMKDHLIGKNVAADIADQLCTSVATKLE 363

Query: 76  AKDVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGK 124
            + +     +   + + I   L+ +  P                +RP+ I   GVNGVGK
Sbjct: 364 GRVLGTFSGVTSTIRQAIRDSLVQILTPKRRIDILRDVMEAKSQNRPYTITFCGVNGVGK 423

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-------------SADFVC 171
           +T + K+   + + G +V++AA DTFR+ A++QL+  A R                    
Sbjct: 424 STNLAKICFWLVENGFRVLIAACDTFRAGAVEQLRTHARRMAALHPPEHHSGVKMVQLYE 483

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G DAA +A EA   A+ +++DV+++DTAGR+ +N  LM  + K+I+V      + P 
Sbjct: 484 KGYGKDAAGIAMEAINFAREQRIDVVLVDTAGRMQDNEPLMRALSKLIKV------NQPE 537

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVV 280
            VL V +A  G +++ Q+  F+                G+++TK D    + G  I +  
Sbjct: 538 LVLFVGEALVGNDSVDQLTKFNQALADFSSMENPRLIDGILLTKFDTIDDKVGAAISMTY 597

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           T   PV F+G G+   DL+    +     + 
Sbjct: 598 TTGQPVVFVGTGQTYTDLKALNVQAVVNALL 628


>gi|295666231|ref|XP_002793666.1| signal sequence receptor alpha subunit [Paracoccidioides
           brasiliensis Pb01]
 gi|226277960|gb|EEH33526.1| signal sequence receptor alpha subunit [Paracoccidioides
           brasiliensis Pb01]
          Length = 651

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 89/319 (27%), Positives = 146/319 (45%), Gaps = 43/319 (13%)

Query: 18  TKGFASTSL-KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVE---- 68
           + G   +SL  +     +I+  + L     D   + +E+ L++ ++    A ++ E    
Sbjct: 326 SNGLVGSSLGAISGLFRNIVGGKVLTKADLDKPLKAMEEHLLKKNVAREAAVRLCEGVEH 385

Query: 69  ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVIL 115
           EL+ K+ A   S+   L    E  + K+L P            ++ P +     RP+VI 
Sbjct: 386 ELVGKKTASFQSIDSALRSAMESSLRKILTPTSSLDLLREIEAVTSPSSSQRQRRPYVIS 445

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS--------- 166
           +VGVNGVGK+T + K+   +     +V++ A DTFRS A++QL++ A             
Sbjct: 446 IVGVNGVGKSTNLSKICFFLLQNNYRVLITACDTFRSGAVEQLRVHARNLQELSSRENVG 505

Query: 167 -ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                    G DAA +A +A   A A   DV++IDTAGR HN+  LM+ + K  +     
Sbjct: 506 HVGLYEKGYGKDAANVAKDAVAYATANNFDVVLIDTAGRRHNDQRLMSSLEKFAKF---- 561

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVA----GTTGLIMTKMDGTARG-GGLIPIVV 280
               P  +  V +A  G +++ Q   F+       G  G I++K D      G L+ +V 
Sbjct: 562 --AQPDKIFMVGEALVGTDSVMQARNFNQAFGTGRGLDGFIISKCDTVGDMVGTLVSMVH 619

Query: 281 THKIPVYFLGVGEGINDLE 299
              IP+ FLG+G+   DL 
Sbjct: 620 ATGIPIVFLGIGQHYGDLR 638


>gi|328766891|gb|EGF76943.1| hypothetical protein BATDEDRAFT_14566 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 634

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 142/336 (42%), Gaps = 52/336 (15%)

Query: 22  ASTSLK-LKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           +STS   L    +  +S+R L +   E    ++++ LI  ++   +A  + + + +    
Sbjct: 304 SSTSGGDLFSFFSKWVSARTLTEVDLEPALIKIKEHLINKNVAADIASLLCDSVKSGLIG 363

Query: 77  KDVSVQRVL-YDVSELIHKMLMPLSKP----------------------FNWDFSHRPHV 113
           K     + L   + EL+   L  +  P                       +     RP+ 
Sbjct: 364 KKTGPFKALNTTIKELMEIALSRILTPSTSTDVLREINAVNNKSHSGNRLSSSHVGRPYT 423

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------- 166
            + VGVNGVGK+T + K+   +     +V++AA DTFRS A++QL++             
Sbjct: 424 FVFVGVNGVGKSTNLSKICFWLLQNKKRVLIAACDTFRSGAVEQLRVHVKNLKALEKGAV 483

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D      G D AA+A EA   A  ++ D+++IDTAGR+ +N  LM  + K+I       
Sbjct: 484 VDLFDRGYGKDPAAIAKEAIAYATLERYDIVLIDTAGRMQDNEPLMRALAKLIS------ 537

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVA----------GTTGLIMTKMDG-TARGGGL 275
            + P  +L V +A  G  A+ Q+  F+                G+I+TK D    + G  
Sbjct: 538 TNNPDKILFVGEALVGNGAVDQLTKFNQAFRDFSGMREPRQIDGMILTKFDTIDDKVGAA 597

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           + +      P+ F+G G+   DL     +   + + 
Sbjct: 598 LSMTYATGKPILFVGTGQTYTDLRKLNVRSVVSSLL 633


>gi|68467725|ref|XP_722021.1| hypothetical protein CaO19.11434 [Candida albicans SC5314]
 gi|46443968|gb|EAL03246.1| hypothetical protein CaO19.11434 [Candida albicans SC5314]
          Length = 535

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 84/313 (26%), Positives = 146/313 (46%), Gaps = 33/313 (10%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY-AKDVSVQRV 84
                 I+  +      D V ++  + LI  +I   +A  I++++ TK    K V++   
Sbjct: 228 SGFFSKISSYLGGTINVDEVSKKFREQLITKNITPGIATTIIDKIKTKLSSNKKVTMAVY 287

Query: 85  LYDVSELIHKMLMPLSK-------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
              +++ + K+L P            N + + RP+VI VVGVNGVGK+T + KL+     
Sbjct: 288 KQALTDELTKILTPNVSTDLLHDIKRNAELNTRPYVISVVGVNGVGKSTNLAKLAFWFLQ 347

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTS------------ADFVCSEIGSDAAAL--AY 183
             L V++ A DTFRS A++QLK+     +             D      GS    +  A 
Sbjct: 348 HNLNVLICACDTFRSGAVEQLKVHVTNLNRLNEASTNTKSRIDIFEKGYGSGDHVVQTAK 407

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+  K D+++IDTAGR H+N+ LMA + K        D   P+ ++ V +A  G 
Sbjct: 408 QAVQYAEENKFDIVLIDTAGRTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGT 461

Query: 244 NALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
           +++ Q   F+   G        I++K+D      G +I +V+   +P+ F+G G+   D+
Sbjct: 462 DSVEQATNFNKAFGNKRTLDFFIISKVDTVGDLVGTMINMVMATNVPILFVGTGQTYTDI 521

Query: 299 EPFVAKDFSAVIT 311
           +    K    ++ 
Sbjct: 522 KRLSVKQVVEMLM 534


>gi|226293236|gb|EEH48656.1| signal recognition particle protein [Paracoccidioides brasiliensis
           Pb18]
          Length = 651

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 89/319 (27%), Positives = 146/319 (45%), Gaps = 43/319 (13%)

Query: 18  TKGFASTSL-KLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVE---- 68
           + G   +SL  +     +I+  + L     D   + +E+ L++ ++    A ++ E    
Sbjct: 326 SNGLVGSSLGAISGLFRNIVGGKVLTKADLDKPLKAMEEHLLKKNVAREAAVRLCEGVVH 385

Query: 69  ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVIL 115
           EL+ K+ A   S+   L    E  + K+L P            ++ P +     RP+VI 
Sbjct: 386 ELVGKKTASFQSIDSALRSAMESSLRKILTPTSSLDLLREIEAVTSPSSSQRQRRPYVIS 445

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS--------- 166
           +VGVNGVGK+T + K+   +     +V++ A DTFRS A++QL++ A             
Sbjct: 446 IVGVNGVGKSTNLSKICFFLLQNNYRVLITACDTFRSGAVEQLRVHARNLQELSSRENVG 505

Query: 167 -ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                    G DAA +A +A   A A   DV++IDTAGR HN+  LM+ + K  +     
Sbjct: 506 HVGLYQKGYGKDAANVAKDAVAYATANSFDVVLIDTAGRRHNDQRLMSSLEKFAKF---- 561

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVA----GTTGLIMTKMDGTARG-GGLIPIVV 280
               P  +  V +A  G +++ Q   F+       G  G I++K D      G L+ +V 
Sbjct: 562 --AQPDKIFMVGEALVGTDSVMQARNFNQAFGAGRGLDGFIISKCDTVGDMVGTLVSMVH 619

Query: 281 THKIPVYFLGVGEGINDLE 299
              IP+ FLG+G+   DL 
Sbjct: 620 ATGIPIVFLGIGQHYGDLR 638


>gi|312126840|ref|YP_003991714.1| flagellar biosynthetic protein flhf [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776859|gb|ADQ06345.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 372

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 142/311 (45%), Gaps = 27/311 (8%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITD-----IISSRRL-DDGVREELEDLLIRSDIGVAVA 63
            ++ I++L K   S    LKE I       I  ++ L        + + LI++ +   + 
Sbjct: 77  QMTQIKELEKKIDSLEKALKEVIKKEQEEGISQTKELSKKNFLNVMRENLIKNGVENEIV 136

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
             ++  L  +      S+  V+ ++ + I  ML   + P +++ S  P ++  VG  GVG
Sbjct: 137 DMLLSNLSAEA-----SINSVVNNMYKEIKNMLGA-AAPLSFN-SKLPKIVFFVGPTGVG 189

Query: 124 KTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT I K++ K+    G KV     DT+R AA++QLK +A+  +          +   + 
Sbjct: 190 KTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEVDEYDRII 249

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                       DV+++DTAGR H N   M     +   + + +P     V  +L ATT 
Sbjct: 250 EN------FSDSDVVLVDTAGRSHKNQEHMDE---LKAFVTKANP---DEVFLLLSATTQ 297

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301
            +  ++V   ++      +I+TK+D  +  G ++ I    + P+ ++  G+ + +D+E F
Sbjct: 298 PSVFKEVVNTYSFLDDYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTGQNVPDDIEQF 357

Query: 302 VAKDFSAVITG 312
             + F+ +I G
Sbjct: 358 NPEQFAKLIIG 368


>gi|302920457|ref|XP_003053074.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734014|gb|EEU47361.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 658

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 87/327 (26%), Positives = 143/327 (43%), Gaps = 42/327 (12%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F S    +     +++  + L     D   + +E+ L++ ++    A ++ E +  +   
Sbjct: 335 FGSGVNAISGLFRNVVGGKTLTKADLDAAMKGMEEHLLKKNVAREAAVRLCEGVEKELLG 394

Query: 77  KDV----SVQRVLYDVSEL-IHKMLMPLSK-------------PFNWDFSHRPHVILVVG 118
                  S+   +    E  + KML P S                      RP+V+ +VG
Sbjct: 395 VKTGSFESINTRIQAAMEASLTKMLTPTSSLDLLREIDAITAPSVTSMRKARPYVMSIVG 454

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS---------ADF 169
           VNGVGK+T + K+   +     KV++AAGDTFRS A++QL +                + 
Sbjct: 455 VNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQLAVHVRNLKELTAREGGRVEL 514

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                G DAA +A +A   A  +  DV++IDTAGR HN+  LM+ + K  +         
Sbjct: 515 YQKGYGKDAATVAKDAVTHAAQEGFDVVLIDTAGRRHNDQRLMSSLEKFAKF------AQ 568

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKI 284
           P  +L V +A  G +++ Q   F+A  G      G I++K D      G L+ +V    +
Sbjct: 569 PDKILMVGEALVGTDSVAQARNFNAAFGAVRTLDGFIISKCDTVGDMVGTLVSLVHATNV 628

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVIT 311
           PV F+GVG+  +DL  F  K     + 
Sbjct: 629 PVLFVGVGQHYSDLRNFSVKWAVEKLL 655


>gi|238882842|gb|EEQ46480.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 535

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 84/313 (26%), Positives = 146/313 (46%), Gaps = 33/313 (10%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRV 84
                 I+  +      D V ++  + LI  +I   +A  I++++ TK  A K V++   
Sbjct: 228 SGFFSKISSYLGGTINVDEVSKKFREQLITKNITPGIATTIIDKIKTKLSANKKVTMAVY 287

Query: 85  LYDVSELIHKMLMPLSK-------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
              +++ + K+L P            N + + RP+VI VVGVNGVGK+T + KL+     
Sbjct: 288 KQALTDELTKILTPNVSTDLLHDIKRNAELNTRPYVISVVGVNGVGKSTNLAKLAFWFLQ 347

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS--------------EIGSDAAALAY 183
             L V++ A DTFRS A++QLK+  +  +     S                G      A 
Sbjct: 348 NNLNVLICACDTFRSGAVEQLKVHVNNLNRLNEASTNTKSRIGIFEKGYGSGDHVVQTAK 407

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A + A+  K D+++IDTAGR H+N+ LMA + K        D   P+ ++ V +A  G 
Sbjct: 408 QAVQYAEENKFDIVLIDTAGRTHSNAKLMAPLKKF------GDAANPNKIIMVGEALVGT 461

Query: 244 NALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
           +++ Q   F+   G        I++K+D      G +I +V+   +P+ F+G G+   D+
Sbjct: 462 DSVEQATNFNKAFGNKRTLDFFIISKVDTVGDLVGTMINMVIATNVPILFVGTGQTYTDI 521

Query: 299 EPFVAKDFSAVIT 311
           +    K    ++ 
Sbjct: 522 KRLSVKQVVEMLM 534


>gi|118575617|ref|YP_875360.1| signal recognition particle GTPase [Cenarchaeum symbiosum A]
 gi|118194138|gb|ABK77056.1| signal recognition particle GTPase [Cenarchaeum symbiosum A]
          Length = 397

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 126/266 (47%), Gaps = 20/266 (7%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRP- 111
           + V + ++I   L  +   +           ++  + + + K+L   S+     FS +P 
Sbjct: 1   MDVRLVKEIAGRLEERCVGEVPPPGLSRKDHIVKILYDELAKLLGGESE-----FSFKPG 55

Query: 112 --HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
             + +L++G+ G GK+T+  KL+K ++  G K  +   DT+R  A+ QL+   +R++ + 
Sbjct: 56  RTNKVLMLGIQGSGKSTITAKLAKLLTRQGYKTGVVGADTYRPGALVQLRTMCERSNVEV 115

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
              E  SDA A+     +       DV+++DTAGR      L+     M R+ K  +P  
Sbjct: 116 YGEEGESDAPAVVRRGLRHFGDS-CDVILVDTAGRHKEEGELLDE---MKRIGKAAEP-- 169

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
               L V+D T G     Q E FH      G+++TK+D +A+GGG I         V ++
Sbjct: 170 -DLALLVIDGTIGNRCYAQAEAFHKTVPVGGIVVTKLDSSAKGGGAIAASAATGSSVMYI 228

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLD 315
           G GE I+D+E F +  F   + G  D
Sbjct: 229 GTGERIDDIEQFSSTRFVGRLLGMGD 254


>gi|309800530|ref|ZP_07694681.1| signal recognition particle protein [Streptococcus infantis SK1302]
 gi|308115841|gb|EFO53366.1| signal recognition particle protein [Streptococcus infantis SK1302]
          Length = 223

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 56/173 (32%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           + A D +R AAIDQLK    +             A  +  +  +QA+A   D ++IDTAG
Sbjct: 6   MIAADIYRPAAIDQLKTLGQQIDVPVFALGTEVPAVEIVRQGLEQAKANHNDYVLIDTAG 65

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RL  + +LM  +  +  +        P+ +L V+DA  GQ A      F+A    TG+I+
Sbjct: 66  RLQIDELLMNELRDVKAL------AQPNEILLVIDAMIGQEAANVAREFNAQLEVTGVIL 119

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           TK+DG  RGG  + +      P+ F G GE I D+E F     ++ I G  D 
Sbjct: 120 TKIDGDTRGGAALSVRHITGKPIKFTGTGEKITDIETFHPDRMASRILGMGDM 172


>gi|195048490|ref|XP_001992537.1| GH24806 [Drosophila grimshawi]
 gi|193893378|gb|EDV92244.1| GH24806 [Drosophila grimshawi]
          Length = 628

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 79/319 (24%), Positives = 138/319 (43%), Gaps = 45/319 (14%)

Query: 32  ITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
              I+ ++ +         E++ D LI  ++   +A K+ + + T    K +     + +
Sbjct: 315 FKGIVGAKTMTLSDLQPALEKMRDHLISKNVASEIAGKLCDSVATSLEGKQMGTFDSIAN 374

Query: 88  -VSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            V E + + L+ +  P               + RP+ I+  GVNGVGK+T + K+   + 
Sbjct: 375 MVKEALTQSLVRILSPKRRIDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLI 434

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAAALAY 183
           +    V++AA DTFR+ A++QL+      +                     G DAA +A 
Sbjct: 435 ENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHPAVKHNNRTMVQLYEKGYGKDAAGIAM 494

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA K A   K+DV+++DTAGR+ +N  LM  + K+I+V      + P  VL V +A  G 
Sbjct: 495 EAIKFANDTKIDVVLVDTAGRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGN 548

Query: 244 NALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVG 292
            A+ Q+  F+                G+++TK D    + G  I +      P+ F+G G
Sbjct: 549 EAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTG 608

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +   DL+          + 
Sbjct: 609 QTYADLKAINVNAVVNSLM 627


>gi|302692290|ref|XP_003035824.1| hypothetical protein SCHCODRAFT_74228 [Schizophyllum commune H4-8]
 gi|300109520|gb|EFJ00922.1| hypothetical protein SCHCODRAFT_74228 [Schizophyllum commune H4-8]
          Length = 645

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 82/333 (24%), Positives = 139/333 (41%), Gaps = 49/333 (14%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
              S   +   G   ++++  L   V E ++  L++ ++   +A K+ E +      K V
Sbjct: 321 ALGSLFARFTGG--KVLTAADL-QPVLEAMKQHLMKKNVAREIADKVCEGVGESLVGKKV 377

Query: 80  S-VQRVLYDVSELIHKMLMPLSKPFN--------------WDFSHRPHVILVVGVNGVGK 124
              Q     V   +   L  +  P                   +  P+ I  VGVNGVGK
Sbjct: 378 GGFQTTNAAVRSALSSSLTQILTPKTSTDMLLSIRTKLSAPAPARAPYTIAFVGVNGVGK 437

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVC 171
           +T + K+   +   GL+V++AA DTFRS A++QL++                    +   
Sbjct: 438 STNLSKVCFWLIQNGLRVLIAACDTFRSGAVEQLRVHVRNLGMLGVNGAADSKGRVELFE 497

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G DAAA+  EA + A+    DV++IDTAGR+ +N  LM  + K++ V      + P 
Sbjct: 498 RGYGKDAAAIGKEAIQYAKDNDFDVVLIDTAGRMQDNEPLMRALAKLVAV------NNPD 551

Query: 232 SVLQVLDATTGQNALRQVEMFHAVA-----------GTTGLIMTKMDG-TARGGGLIPIV 279
            ++ V +A  G  A+ Q+  F               G  G+++TK D    + G  + + 
Sbjct: 552 KIVFVGEALVGNEAVDQLTKFDRALRDFSSMSGVGRGIDGMLVTKWDTVDDKVGAALSMT 611

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
                P+ F+G G+   DL     ++    I G
Sbjct: 612 YITGQPILFVGCGQTYTDLRQLRVQNVVQAILG 644


>gi|194889839|ref|XP_001977167.1| GG18880 [Drosophila erecta]
 gi|190648816|gb|EDV46094.1| GG18880 [Drosophila erecta]
          Length = 615

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 143/336 (42%), Gaps = 51/336 (15%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +K+ +G       L      I+ ++ +         +++ D LI  ++   +A K+ + +
Sbjct: 291 KKIKRG------GLLSYFKGIVGAKTMSLADLQPALDKMRDHLISKNVATEIAAKLCDSV 344

Query: 71  LTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGV 119
            T    K +     +   V E + + L+ +  P               + RP+ I+  GV
Sbjct: 345 ATSLDGKQMGTFDSIASQVKEALTQSLVRILSPKRRIDIIRDALESKRNGRPYTIIFCGV 404

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------------- 166
           NGVGK+T + K+   + +    V++AA DTFR+ A++QL+      +             
Sbjct: 405 NGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHPAAKHDGRTM 464

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                   G DAA +A EA K A   +VDV+++DTAGR+ +N  LM  + K+I+V     
Sbjct: 465 VQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSLSKLIKV----- 519

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGL 275
            + P  VL V +A  G  A+ Q+  F+                G+++TK D    + G  
Sbjct: 520 -NNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAA 578

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           I +      P+ F+G G+   DL+          + 
Sbjct: 579 ISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLM 614


>gi|24641198|ref|NP_524887.2| GTP-binding protein [Drosophila melanogaster]
 gi|47117334|sp|Q9U5L1|SRPR_DROME RecName: Full=Signal recognition particle receptor subunit alpha
           homolog; Short=DP-alpha; Short=Docking protein alpha;
           Short=SR-alpha; AltName: Full=GTP-binding protein
 gi|22832080|gb|AAF48002.2| GTP-binding protein [Drosophila melanogaster]
 gi|201065707|gb|ACH92263.1| FI05231p [Drosophila melanogaster]
          Length = 614

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 139/326 (42%), Gaps = 45/326 (13%)

Query: 25  SLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK--- 77
              L      I+ ++ +         E++ D LI  ++   +A K+ + +      K   
Sbjct: 294 RGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISKNVASEIAAKLCDSVAASLDGKQMG 353

Query: 78  --DVSVQRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             D    +V   ++E + ++L P      +        + RP+ I+  GVNGVGK+T + 
Sbjct: 354 TFDSIASQVKEALTESLVRILSPKRRIDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLA 413

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGS 176
           K+   + +    V++AA DTFR+ A++QL+      +                     G 
Sbjct: 414 KICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHPAAKHDGRNMVQLYEKGYGK 473

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           DAA +A EA K A   +VDV+++DTAGR+ +N  LM  + K+I+V      + P  VL V
Sbjct: 474 DAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSLSKLIKV------NNPDLVLFV 527

Query: 237 LDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIP 285
            +A  G  A+ Q+  F+                G+++TK D    + G  I +      P
Sbjct: 528 GEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQP 587

Query: 286 VYFLGVGEGINDLEPFVAKDFSAVIT 311
           + F+G G+   DL+          + 
Sbjct: 588 IVFVGTGQTYADLKAINVNAVVNSLM 613


>gi|156055398|ref|XP_001593623.1| hypothetical protein SS1G_05051 [Sclerotinia sclerotiorum 1980]
 gi|154702835|gb|EDO02574.1| hypothetical protein SS1G_05051 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 660

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/325 (26%), Positives = 143/325 (44%), Gaps = 42/325 (12%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           S+   +     +++  + L     ++    +ED L+R ++    A ++ E +  +     
Sbjct: 339 SSFSAIGGLFRNVVGGKTLTKEDLDKAMKGMEDHLLRKNVAREAAMRLCEGVERELIGVK 398

Query: 79  V----SVQRVLYDVSEL-IHKMLMP-------------LSKPFNWDFSHRPHVILVVGVN 120
                SVQ  +    E  + K+L P             +S P       RP+V+ +VGVN
Sbjct: 399 TGSFESVQARIATAMESSLRKILTPTSSLDLLREIDAVVSPPALSLKKKRPYVMSIVGVN 458

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---------SADFVC 171
           GVGK+T + K+   +     KV++ A DTFRS A++QL +                +   
Sbjct: 459 GVGKSTNLSKICYFLLQNKYKVLVVACDTFRSGAVEQLAVHVRNLKELTAREGGQVELYQ 518

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G DAA +A ++   A  +  DV++IDTAGR HN+  LM+ + K  +         P 
Sbjct: 519 KGYGKDAANVAKDSVSFAAQEGYDVVLIDTAGRRHNDQRLMSSLEKFAKF------AQPD 572

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPV 286
            +L V +A  G +++ Q   F+A  G      G I++K D      G L+ +V    +PV
Sbjct: 573 KILMVGEALVGTDSVAQARNFNAAFGQGRSLDGFIISKCDTVGDMVGTLVSMVHATNVPV 632

Query: 287 YFLGVGEGINDLEPFVAKDFSAVIT 311
            F+GVG+  +DL     K     + 
Sbjct: 633 LFVGVGQHYSDLRNLSVKWAVEKLM 657


>gi|242780873|ref|XP_002479687.1| signal sequence receptor alpha subunit, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218719834|gb|EED19253.1| signal sequence receptor alpha subunit, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 644

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 86/308 (27%), Positives = 141/308 (45%), Gaps = 42/308 (13%)

Query: 28  LKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAKD----V 79
           +     +I+  + L +   E+    +ED L++ ++    A ++ E +  +   K      
Sbjct: 330 IGGLFRNIVGGKILREEDLEKPLKAMEDHLMKKNVAREAALRLCEGVKQELVGKKTANFQ 389

Query: 80  SVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           SV   L    E  + K+L P            ++ P   + + RP+VI +VGVNGVGK+T
Sbjct: 390 SVDAALRSAMEASLRKILTPTSSLDLLHEIQAVTAPTAKEQAPRPYVISIVGVNGVGKST 449

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEIGS 176
            + K+   +     +V++AA DTFRS A++QL++                 +      G 
Sbjct: 450 NLSKICFFLLQNNYRVLVAACDTFRSGAVEQLRVHVRNLTELSARENIGEVELYEKGYGK 509

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           DAA +A +A     A K DV++IDTAGR HN+  LM+ + K  +         P  +  V
Sbjct: 510 DAANVAKDAVAYGAANKFDVVLIDTAGRRHNDQRLMSSLEKFAKFAN------PDKIFMV 563

Query: 237 LDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGV 291
            +A  G +++ Q   F+   G      G I++K D      G L+ +V    IP+ FLGV
Sbjct: 564 GEALVGTDSVMQARNFNQAFGPGRNLDGFIISKCDTVGDMVGTLVSMVHATSIPIVFLGV 623

Query: 292 GEGINDLE 299
           G+   DL 
Sbjct: 624 GQHYGDLR 631


>gi|71030694|ref|XP_764989.1| signal recognition particle receptor subunit alpha [Theileria parva
           strain Muguga]
 gi|68351945|gb|EAN32706.1| signal recognition particle receptor alpha subunit, putative
           [Theileria parva]
          Length = 579

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 128/263 (48%), Gaps = 22/263 (8%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHV-------IL 115
           + IV  L+ KR     S+   +    E  + ++L P   P N     +  V       I+
Sbjct: 323 RSIVTHLVGKRTESLRSLSSTVRTALESSVRRILTPKD-PINLIKQVKHTVANGGIYSIV 381

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            +GVNGVGK+T + K++  +   G KV++ A DTFRS A++QLK               G
Sbjct: 382 FLGVNGVGKSTSLAKVAYLLKSNGFKVLVVACDTFRSGAVEQLKTHTTNLGLHLFERGYG 441

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D A +A E  K A   + DV++IDTAGR+ +N  LMA + K+I V      + P+ ++ 
Sbjct: 442 KDPAQIAKEGIKHAVNNQFDVVLIDTAGRMQDNEPLMAALTKLIVV------NNPNLIIF 495

Query: 236 VLDATTGQNALRQVEMFHAVAG------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYF 288
           V +A  G +A+ Q++ F+   G         L++TK D    + G  + +V     P+ F
Sbjct: 496 VGEALVGNDAVDQLKKFNLAIGKGTDRTIDALLLTKFDTVDDKVGAALSMVYITGKPILF 555

Query: 289 LGVGEGINDLEPFVAKDFSAVIT 311
           +G G+  +DL+P   +  +  + 
Sbjct: 556 VGNGQTYSDLQPLNIELITQFLL 578


>gi|19074626|ref|NP_586132.1| SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT [Encephalitozoon
           cuniculi GB-M1]
 gi|19069268|emb|CAD25736.1| SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT [Encephalitozoon
           cuniculi GB-M1]
          Length = 425

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 148/305 (48%), Gaps = 28/305 (9%)

Query: 29  KEGITDIIS--SRRLD-DGVREELEDLLIRSDIGVAVAQKIVEEL---LTKRYAKDVSVQ 82
           K  +          +D + +++++   LI  ++   + + +VE++   L +   K VS +
Sbjct: 125 KATVKKAFGLFKGEIDVNELKDKMTTHLISKNVSYQITKTLVEDIMSELAEEEIKSVSEK 184

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
                ++ ++ K++  +      D          I  VGVNGVGK+T + K+   +    
Sbjct: 185 TFKEKMANVLSKLIPSVDHEEMLDRIRGHKGVFSICFVGVNGVGKSTSLAKICYWLLQNK 244

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTS-----ADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           L+V +AA DTFR+ AI+QLK   +R         F     G D A++A  A ++AQ +  
Sbjct: 245 LRVYIAACDTFRAGAIEQLKTHVERFKLGGHLVGFYEKGYGKDDASVARCAIQEAQHEGY 304

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV++IDTAGR+HN   LMA + K++++      + P  ++ V +A  G ++L  +  F+ 
Sbjct: 305 DVILIDTAGRMHNKKNLMASLTKLMKI------NRPDHIIYVGEALVGSDSLDHIREFNK 358

Query: 255 VA-------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                        +++TK+D    R G ++ +  +   P+ FLGVG+  +DL    ++D 
Sbjct: 359 AIRDADQSRKIDSILLTKVDTVDDRIGQILNMAFSSHAPILFLGVGQSNSDLSKIGSEDI 418

Query: 307 SAVIT 311
            + + 
Sbjct: 419 VSSLM 423


>gi|289740369|gb|ADD18932.1| signal recognition particle receptor alpha subunit [Glossina
           morsitans morsitans]
          Length = 618

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 139/328 (42%), Gaps = 45/328 (13%)

Query: 23  STSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
                +      I+ S+ L         +++ D LI  ++   ++ K+ + + +    K 
Sbjct: 296 KEKSGILSYFKGIVGSKTLTRNDLQPALDKMRDHLISKNVAADISGKLCDSVASSLEGKS 355

Query: 79  VSVQRVLYDVSEL-----IHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           V     +  + +      + ++L P      +        ++ P+ I+  GVNGVGK+T 
Sbjct: 356 VGTFDSVASMVKEALTMSLVRILSPKRRLDIIRDAMEAKSNNTPYTIIFCGVNGVGKSTN 415

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEI 174
           + K+   + +    V++AA DTFR+ A++QL+      +                     
Sbjct: 416 LAKICFWLIENDFSVLIAACDTFRAGAVEQLRTHTRHLNALHPADRHDGRSMVQLYEKGY 475

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAA +A EA K A+  +VDV+++DTAGR+ +N  LM  + K+I+V      + P  VL
Sbjct: 476 GKDAAGIAMEAIKFARDTRVDVVLVDTAGRMQDNEPLMRSLAKLIKV------NDPDLVL 529

Query: 235 QVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHK 283
            V +A  G  A+ Q+  F+                G+++TK D    + G  I +     
Sbjct: 530 FVGEALVGNEAVDQLVKFNQSLADYSSDGNPHIIDGIVLTKFDTIDDKVGAAISMTYITG 589

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            P+ F+G G+   DL+          + 
Sbjct: 590 QPIVFVGTGQTYADLKAINVNAVVNSLM 617


>gi|203287545|ref|YP_002222560.1| signal recognition particle-docking protein [Borrelia recurrentis
           A1]
 gi|201084765|gb|ACH94339.1| signal recognition particle-docking protein [Borrelia recurrentis
           A1]
          Length = 281

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 99/287 (34%), Positives = 166/287 (57%), Gaps = 9/287 (3%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
            +   I ++  ++     + E LEDLL+ +DI   +  +IVE +  K  AKD   Q  + 
Sbjct: 2   SIFNKIRNLFKNKE-KTQIIERLEDLLLEADIKNDIVIEIVEHI-QKIKAKD--KQETVL 57

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            +  L+   L    +P N + + R +++L++GVNGVGKT+ I KL+ K  + G  V++AA
Sbjct: 58  QLKNLLKSYLNQ--QPLNLE-NKRLNILLILGVNGVGKTSSIIKLANKFKNEGKNVLIAA 114

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+AAI+QLKI +++     +    GSDAAA+ +++   A+ K  D+LIIDTAGRL 
Sbjct: 115 ADTFRAAAIEQLKIQSEKIGIKVISQNQGSDAAAVIFDSISSAKTKNYDILIIDTAGRLQ 174

Query: 207 NNSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           N   L+  + KM +V+K+  LD +  +  + V+D+ +G+N   Q E+F       G+I T
Sbjct: 175 NKENLIKELKKMDQVIKKQILDTNINYKKILVIDSISGKNTNNQTEIFDKAIQIDGIIAT 234

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K D ++R GG+I I    + P+YF   GE +++++ F  +++   + 
Sbjct: 235 KFDSSSRAGGIINISKLFQKPIYFFTFGEQVDNIKEFNTENYLNKLL 281


>gi|203284002|ref|YP_002221742.1| signal recognition particle-docking protein FtsY [Borrelia duttonii
           Ly]
 gi|201083445|gb|ACH93036.1| signal recognition particle-docking protein FtsY [Borrelia duttonii
           Ly]
          Length = 281

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 99/287 (34%), Positives = 166/287 (57%), Gaps = 9/287 (3%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
            +   I ++  ++     + E LEDLL+ +DI   +  +IVE +  K  AKD   Q  + 
Sbjct: 2   SIFNKIRNLFKNKE-KTQIIERLEDLLLEADIKNDIVIEIVEHI-QKIKAKD--EQETVL 57

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            +  L+   L    +P N + + R +++L++GVNGVGKT+ I KL+ K  + G  V++AA
Sbjct: 58  QLKNLLKSYLNQ--QPLNLE-NKRLNILLILGVNGVGKTSSIIKLANKFKNEGKNVLIAA 114

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+AAI+QLKI +++     +    GSDAAA+ +++   A+ K  D+LIIDTAGRL 
Sbjct: 115 ADTFRAAAIEQLKIQSEKIGIKVISQNQGSDAAAVIFDSISSAKTKNYDILIIDTAGRLQ 174

Query: 207 NNSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           N   L+  + KM +V+K+  LD +  +  + V+D+ +G+N   Q E+F       G+I T
Sbjct: 175 NKENLIKELKKMDQVIKKQILDTNINYKKILVIDSISGKNTNNQTEIFDKAIQIDGIIAT 234

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K D ++R GG+I I    + P+YF   GE +++++ F  +++   + 
Sbjct: 235 KFDSSSRAGGIINISKLFQKPIYFFTFGEQVDNIKEFNTENYLNKLL 281


>gi|326436082|gb|EGD81652.1| hypothetical protein PTSG_02368 [Salpingoeca sp. ATCC 50818]
          Length = 668

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 140/328 (42%), Gaps = 44/328 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           ++T+  L      I  +  +       + ++++  L+  ++   VA K+   +  K   +
Sbjct: 342 STTTGSLFTLFRKITGTSEMTKENVQPILDQMQQHLMAKNVAADVAAKLCASVGEKLVGR 401

Query: 78  DVSVQRVLYDV-SELIHKMLMPLSKPFN----------WDFSHRPHVILVVGVNGVGKTT 126
                  +  V  + + + L  +  P                 RP  ++  GVNGVGK+T
Sbjct: 402 TKGTFTTIKSVVKQALEESLTQILSPKRQIDILRDVRAAQQEGRPFSMVFCGVNGVGKST 461

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT------------SADFVCSEI 174
            + K++  +    ++VM+AA DTFRS A++QL+    +                      
Sbjct: 462 NLSKIAFWLLSNNMRVMIAACDTFRSGAVEQLRTHCRKLRTMLDDTDDAHPRVVVYDRGY 521

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G + A +A +A + A+++K DV++IDTAGR+ +N+ LM  + ++IR  K      P  VL
Sbjct: 522 GRNDAEVAADAIRIAKSEKYDVVLIDTAGRMQDNAPLMRSLTQLIRTNK------PDLVL 575

Query: 235 QVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHK 283
            V +A  G  A+ Q+  F+                G+++TK D    + G  I +     
Sbjct: 576 FVGEALVGNEAVDQLTKFNRALQDYSEERNPRVIDGILLTKFDTVDDKVGSSISMTYITG 635

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            P+ F+G G+   DL     K   + + 
Sbjct: 636 QPIVFVGTGQHYFDLRKLNVKSVVSALL 663


>gi|299753684|ref|XP_002911906.1| signal recognition particle binding protein [Coprinopsis cinerea
           okayama7#130]
 gi|298410414|gb|EFI28412.1| signal recognition particle binding protein [Coprinopsis cinerea
           okayama7#130]
          Length = 661

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/337 (23%), Positives = 143/337 (42%), Gaps = 55/337 (16%)

Query: 24  TSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           ++  L      +  S+ L +     V E ++  L++ ++ + +A+K+ E +      K +
Sbjct: 329 STSALGSLFARLTGSKVLTEADLKPVLEGMKQHLMKKNVAMDIAEKVCEGVGETLVGKKI 388

Query: 80  SVQRVLYD-----VSELIHKMLMP-LSKPFNWDFSHR------------PHVILVVGVNG 121
              + +       +S  + ++L P  S        ++            P+ I  VGVNG
Sbjct: 389 GSFQTVTAAVRVALSNSLTRILTPKTSTDLLLSIKNKRASALPSGQQRMPYSITFVGVNG 448

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------AD 168
           VGK+T + K+   +   GL+V++AA DTFRS A++QL++                    +
Sbjct: 449 VGKSTNLSKVCFWLIQNGLRVLIAACDTFRSGAVEQLRVHVRNLGMLGVNGAGDSKGRVE 508

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                 G DAA +A EA   A+    DV++IDTAGR+ +N  LM  + K++ V      +
Sbjct: 509 LFERGYGKDAAGIAKEAILYAKDNDFDVVLIDTAGRMQDNEPLMRALAKLVAV------N 562

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVA-------------GTTGLIMTKMDG-TARGGG 274
            P  ++ V +A  G  A+ Q+  F                 G  G+++TK D    + G 
Sbjct: 563 NPDKIIFVGEALVGNEAVDQLTKFDRALRDFSSASGAGKGRGIDGMLVTKWDTVDDKVGA 622

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            + +      P+ F+G G+   DL      +    I 
Sbjct: 623 ALSMTYVTGQPIIFVGCGQTYTDLRQLRVANVVGAIL 659


>gi|328352201|emb|CCA38600.1| Signal recognition particle receptor subunit alpha [Pichia pastoris
           CBS 7435]
          Length = 558

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 140/308 (45%), Gaps = 34/308 (11%)

Query: 32  ITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           ++ + S + + +       + L + LI  ++   +A+K+VE +        V+       
Sbjct: 256 LSGLFSGKTVTEDDLTKTSKSLSEHLINKNVAPEIAKKLVERINKSLVGTKVTTSIPKAA 315

Query: 88  VSELIHKMLMPLSKPFNWDF---------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
            + L  ++L  L+   + +          + +P+VI VVGVNGVGK+T + KL+  +   
Sbjct: 316 RNALEKELLKLLTPETSINLLKEIQSKKAARKPYVISVVGVNGVGKSTNLSKLAFWLLSN 375

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRT--------SADFVCSEI--GSDAAALAYEAFKQ 188
             +V++ A DTFRS A++QL++  +            +            + +A  A + 
Sbjct: 376 KYRVLITACDTFRSGAVEQLRVHVNNLKKLTEDESHVELFQGGYGGADLVSKIAKGAIQY 435

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+  K D++++DTAGR HN++ LMA +   ++  K      P  ++ V +A  G ++++Q
Sbjct: 436 AEENKFDIVLLDTAGRRHNDAQLMAPLQGFVKAAK------PDKIIMVGEALVGTDSVQQ 489

Query: 249 VEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            + F+   G        I++K D      G ++ +V    IP+ F+G G+   DL     
Sbjct: 490 AKNFNGAFGPGRTLDFFIISKCDTVGDLIGSMVNMVYATGIPILFVGTGQTYTDLRTLSV 549

Query: 304 KDFSAVIT 311
                 + 
Sbjct: 550 DWAVDTLM 557


>gi|254568342|ref|XP_002491281.1| Signal recognition particle (SRP) receptor-alpha subunit [Pichia
           pastoris GS115]
 gi|238031078|emb|CAY69001.1| Signal recognition particle (SRP) receptor-alpha subunit [Pichia
           pastoris GS115]
          Length = 558

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 140/308 (45%), Gaps = 34/308 (11%)

Query: 32  ITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           ++ + S + + +       + L + LI  ++   +A+K+VE +        V+       
Sbjct: 256 LSGLFSGKTVTEDNLTKTSKSLSEHLINKNVAPEIAKKLVERINKSLVGTKVTTSIPKAA 315

Query: 88  VSELIHKMLMPLSKPFNWDF---------SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
            + L  ++L  L+   + +          + +P+VI VVGVNGVGK+T + KL+  +   
Sbjct: 316 RNALEKELLKLLTPETSINLLKEIQSKKAARKPYVISVVGVNGVGKSTNLSKLAFWLLSN 375

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRT--------SADFVCSEI--GSDAAALAYEAFKQ 188
             +V++ A DTFRS A++QL++  +            +            + +A  A + 
Sbjct: 376 KYRVLITACDTFRSGAVEQLRVHVNNLKKLTEDESHVELFQGGYGGADLVSKIAKGAIQY 435

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A+  K D++++DTAGR HN++ LMA +   ++  K      P  ++ V +A  G ++++Q
Sbjct: 436 AEENKFDIVLLDTAGRRHNDAQLMAPLQGFVKAAK------PDKIIMVGEALVGTDSVQQ 489

Query: 249 VEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
            + F+   G        I++K D      G ++ +V    IP+ F+G G+   DL     
Sbjct: 490 AKNFNGAFGPGRTLDFFIISKCDTVGDLIGSMVNMVYATGIPILFVGTGQTYTDLRTLSV 549

Query: 304 KDFSAVIT 311
                 + 
Sbjct: 550 DWAVDTLM 557


>gi|302835766|ref|XP_002949444.1| hypothetical protein VOLCADRAFT_74239 [Volvox carteri f.
           nagariensis]
 gi|300265271|gb|EFJ49463.1| hypothetical protein VOLCADRAFT_74239 [Volvox carteri f.
           nagariensis]
          Length = 642

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/334 (23%), Positives = 145/334 (43%), Gaps = 53/334 (15%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           +SLK+    T  +S   ++  + + ++  L+  ++   +A ++ + +  +   + ++   
Sbjct: 315 SSLKMNVVGTSALSRADVEPALAD-MKRKLMERNVAEEIASQVCDSVGRRLEGQRLAGFT 373

Query: 84  VL-----YDVSELIHKMLMPLSKPFNWDFSH-----RPHVILVVGVNGVGKTTVIGKLSK 133
            +         E +  +L   +     D        +P+VI+  GVNGVGK+T + K++ 
Sbjct: 374 GVVTFVRSAFEEALSGILNKRAVDVLLDIKKSQARGKPYVIVFCGVNGVGKSTNLAKIAY 433

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            +   G+KVM+AA DTFR+ A++QLK    R            D A +AYEA +QA+   
Sbjct: 434 WLGGHGIKVMIAACDTFRAGAVEQLKTHCARLRVPLYERGYEKDPAKVAYEAIRQAERDG 493

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
             V+++DTAGR+ +N  LM  +  +I V      + P+ VL V +A  G +A+ Q+  F+
Sbjct: 494 QHVVLVDTAGRMQDNQPLMRALSNLIAV------NNPNLVLFVGEALVGNDAVDQLTKFN 547

Query: 254 AVAG-----------------------------------TTGLIMTKMDG-TARGGGLIP 277
                                                    G+++TK D    + G  + 
Sbjct: 548 KALSDLAPTAAAAAASGATGVSGRGNDDGSALTRRHGGVIDGIVLTKFDTIDDKVGAALS 607

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +V T   PV F+G G+   DL+    K     + 
Sbjct: 608 MVYTSGAPVMFVGCGQTYVDLKKLNVKSVVKSLL 641


>gi|153875262|ref|ZP_02003141.1| truncated signal recognition particle protein [Beggiatoa sp. PS]
 gi|152068274|gb|EDN66859.1| truncated signal recognition particle protein [Beggiatoa sp. PS]
          Length = 322

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 95/173 (54%), Gaps = 6/173 (3%)

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ML + D +R AAI QL+  A++  A F  S+       +A  A +QA+ + +DVL++DTA
Sbjct: 1   MLVSCDIYRPAAIKQLETLAEQVGAKFFPSDPTQKPVDIASAAIEQARNQFIDVLLVDTA 60

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH +  +M  I ++           P   L V+D+ TGQ+A +  + F+     TG+I
Sbjct: 61  GRLHIDDEMMDEIKELH------GATQPTETLFVVDSMTGQDAAKTAKAFNDALPLTGVI 114

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +TK DG ARGG  + +      P+ FLG+GE IN LEPF     ++ I G  D
Sbjct: 115 LTKTDGDARGGAALSVRHLTGKPIKFLGIGEKINALEPFYPDRLASRIIGQGD 167


>gi|167519717|ref|XP_001744198.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777284|gb|EDQ90901.1| predicted protein [Monosiga brevicollis MX1]
          Length = 317

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 80/334 (23%), Positives = 136/334 (40%), Gaps = 54/334 (16%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S+   LT     T   L   +                +   LI  ++   +A+K+ E + 
Sbjct: 3   SFFSSLTGSTKLTREALAPVMAK--------------MRLHLIEKNVAQNIAEKLCESVE 48

Query: 72  TKRYAKDVSVQRVLYDV-----SELIHKMLMP------LSKPFNWDFSHRPHVILVVGVN 120
            +    + S    +  V     S+ + ++L P      L          RP+VI   GVN
Sbjct: 49  EQLVGTEKSSFSSIATVVRQAISDALTRILTPKRQVNILRDVREAQRQQRPYVITFCGVN 108

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------------AD 168
           GVGK+T + K++  +    ++V++AA DTFRS A++QLK    +                
Sbjct: 109 GVGKSTNLSKIAFWLLSNNMRVLIAACDTFRSGAVEQLKTHCTKLRNMLQQDDQQAPIVS 168

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                 G D A +A  A   A+ +  DV+++DTAGR+ +N  LM  + K+I+  K     
Sbjct: 169 IFDQGYGKDDAGVAALAISLAKTEGYDVVLVDTAGRMQDNEPLMRSLTKLIKHNK----- 223

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIP 277
            P  VL V +A  G  A+ Q+  F+                G++++K D    + G  I 
Sbjct: 224 -PDLVLFVGEALVGNEAVDQLTKFNKALQDFSESSQPRTLDGIVLSKFDTVDDKVGSAIS 282

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +      P+ F+G G+   DL+    +     + 
Sbjct: 283 MTYITGQPIVFVGTGQDYYDLKTLNVESVVQALL 316


>gi|145494914|ref|XP_001433451.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400568|emb|CAK66054.1| unnamed protein product [Paramecium tetraurelia]
          Length = 436

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 137/303 (45%), Gaps = 13/303 (4%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  +K  +  +   ++++    D +  E+   L ++D+  ++ Q++ E +  +   
Sbjct: 3   LTELGQSIKGVLNKLNQPQQINEVVVDQILNEISIALQKTDVNESLIQELRENIRLEFKL 62

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSK 133
             +    +   + + I + L  L +     F  +   P+V++++G+ G GKT+   K + 
Sbjct: 63  HLLEFINLQRLLQKSIIEELTKLLQNDIMSFQPKKGQPNVMMLIGLKGSGKTSTCFKYAY 122

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G KV +    + +   ID +K  A +    F  S   SD      +  +  + + 
Sbjct: 123 YFQKRGWKVGIICAGSSQLQEIDWVKQQAKKIKVLFYGSYFESDPVNATQDGVQIFKKEG 182

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +D+++IDT G+    + L   + +M  +++      P +++ V+D++ GQ    QV +F 
Sbjct: 183 IDIILIDTVGKYEKETDLCKEMKQMEYMIQ------PDNIIFVMDSSIGQICQDQVFVFK 236

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +      +I+TK+D  ++GGG I  VV    P+ F+  GEG  DL  F +  F + + G 
Sbjct: 237 SAFNQGSIIITKVDRHSKGGGAISAVVATNTPIDFICNGEGHEDLLEFQSSQFISKLLGF 296

Query: 314 LDY 316
            D 
Sbjct: 297 EDL 299


>gi|221132103|ref|XP_002161830.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 644

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 144/347 (41%), Gaps = 45/347 (12%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIG 59
           Q   S+ ++      K  +S    +      +   + +       V +++ + L   ++ 
Sbjct: 304 QDKDSKKVTVGNDTKKSQSSVGGSVFSFFKGLAGQKAITMEAMQPVLDKMREHLCSKNVA 363

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVL-----YDVSELIHKMLMP------LSKPFNWDFS 108
             +++K+   +  K   K +     +       + E + ++L P      L         
Sbjct: 364 TDISEKLCNSVAAKLEGKVLGTFTGVATAVRSSMEESLVQILSPKKRIDILRDVMESKKK 423

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT--- 165
             P+VI+  GVNGVGK+T + K+   + +   +VM+AA DTFRS A++QL+    R    
Sbjct: 424 GLPYVIVFCGVNGVGKSTNLAKICFWLLENNHRVMIAACDTFRSGAVEQLRTHTCRLKAL 483

Query: 166 ----------SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
                              G DAAA++ EA   A+  K DV+++DTAGR+ +N  LM  +
Sbjct: 484 HPKASPSAPEQVFLYDKGYGKDAAAVSMEAINLAKDLKCDVVLVDTAGRMQDNEPLMRSL 543

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTK 265
            K+I++      + P+ VL V +A  G + + Q+  F+                G+++TK
Sbjct: 544 AKLIKI------NEPNLVLFVGEALVGNDGVDQLRKFNQALADHSDVNNPHLIDGIVLTK 597

Query: 266 MDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            D    + G  I +      P+ F+G G+   DL           + 
Sbjct: 598 FDTIDDKVGASISMTYETGQPIVFVGTGQTYTDLRNLNVNAVVKALL 644


>gi|302872551|ref|YP_003841187.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575410|gb|ADL43201.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 371

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 72/310 (23%), Positives = 137/310 (44%), Gaps = 26/310 (8%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQ 64
            ++ I++L K   S    LKE I       +           + + + LI++ +   +  
Sbjct: 77  QMTQIKELEKKIDSLEKALKEVIKKEQEESQHTKEASRKNFLDVMRENLIKNGVENEIVD 136

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            ++  +     + D S+  ++  +   I  ML   + P ++D S  P ++  VG  GVGK
Sbjct: 137 ILLSNV-----SGDGSINTIVNSMYREIKNMLGS-AAPLSFD-SKFPKIVFFVGPTGVGK 189

Query: 125 TTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT I K++ K+    G +V     DT+R AA++QLK +A+  +          +   +  
Sbjct: 190 TTTIAKIAAKLMFEDGKRVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEVDEYDGIIE 249

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                      DV+++DTAGR H N   M  +   +          P  V  +L ATT  
Sbjct: 250 ------SLADSDVVLVDTAGRSHKNQEHMDELKAYVA------KANPDEVFLLLSATTQP 297

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFV 302
           +  ++V   ++      +I+TK+D  +  G ++ I    + P+ ++  G+ + +D+E F 
Sbjct: 298 SVFKEVVNTYSFLDNYKVIVTKVDEVSAYGNILNIRYFTQKPIAYITTGQNVPDDIEQFN 357

Query: 303 AKDFSAVITG 312
            + F+ +I G
Sbjct: 358 PEQFAKLIIG 367


>gi|58699702|ref|ZP_00374368.1| signal recognition particle protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58533780|gb|EAL58113.1| signal recognition particle protein [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 230

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 12/235 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKP 102
           E+   LI +D+ + VA+K + ++  K   + V       Q ++  V + +  +L      
Sbjct: 3   EIRIALIEADVSLEVAKKFINDIKDKVIGEKVIKSVSPAQMIIKIVQDNLVAVLGSEKSD 62

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            N      P VI++VG+ G GKTT  GKL+ K+     KVMLA+ D +R AA  QL++  
Sbjct: 63  LNLAV-KPPAVIMMVGLQGAGKTTTSGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLG 121

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
            +     +   I      +   A   A+    DVLI+DTAGRLH ++ +M  +  +  + 
Sbjct: 122 KQIDVQTLPVVIDEKPITITKRALAAAKNDNYDVLILDTAGRLHIDNNMMNELKAVKEI- 180

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
                 +P  V+ V DA  GQ+A+   + F+ V G TG+I+T++DG ARGG  + 
Sbjct: 181 -----ASPAEVILVADAMIGQDAVNIAKSFNEVIGVTGIILTRVDGDARGGAALS 230


>gi|312621589|ref|YP_004023202.1| flagellar biosynthetic protein flhf [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202056|gb|ADQ45383.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 372

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 141/311 (45%), Gaps = 27/311 (8%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGIT-----DIISSRRL-DDGVREELEDLLIRSDIGVAVA 63
            L+ I++L +   S    LKE I      DI  ++ L      + + + LI++ +   + 
Sbjct: 77  QLTQIKELERKIDSLEKILKEVIKKEQEEDISQTKELSKKNFIDVMRENLIKNGVESEII 136

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
             +   L  +    +V     + ++ + I  ML  ++ P +++ S  P ++  VG  GVG
Sbjct: 137 DMLFSNLSGEASINNV-----VNNIYKEIKNMLG-VAAPLSFN-SKIPKIVFFVGPTGVG 189

Query: 124 KTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT I K++ K+    G KV     DT+R AA++QLK +A+  +          +   + 
Sbjct: 190 KTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEVDEYDRII 249

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                       DV+++DTAGR H N   M  +   +          P  V  +L ATT 
Sbjct: 250 EN------FSDSDVVLVDTAGRSHKNQEHMDELKAFVA------KANPDEVFLLLSATTQ 297

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301
            +  ++V   ++      +I+TK+D  +  G ++ I    + P+ ++  G+ + +D+E F
Sbjct: 298 PSVFKEVVNTYSFLNDYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTGQNVPDDIEQF 357

Query: 302 VAKDFSAVITG 312
             + F+ +I G
Sbjct: 358 NPEQFAKLIIG 368


>gi|303390938|ref|XP_003073699.1| signal recognition particle GTPase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302847|gb|ADM12339.1| signal recognition particle GTPase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 425

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 76/287 (26%), Positives = 143/287 (49%), Gaps = 25/287 (8%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD---VSVQRVLYDVSELIHKMLMPLS 100
            +++++   LI  ++   + + +VE ++ +   +    VS ++    +S ++ K++  + 
Sbjct: 143 ELKDKMTTHLINKNVSYQITRTLVENVMEELSGEGLDVVSEKKFKEKMSNVLGKLIPSVD 202

Query: 101 KPFNWDFSHR---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
                D   +      I  VGVNGVGK+T + K+   +    LKV +AA DTFR+ AI+Q
Sbjct: 203 HEKMLDGIRKHKGVFSICFVGVNGVGKSTSLAKICYWLLKNKLKVYIAACDTFRAGAIEQ 262

Query: 158 LKIWADRTS-----ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           LK   +R         F     G D A++A  A ++AQ +  DV++IDTAGR+HN   LM
Sbjct: 263 LKTHVERFQLGGYSVGFYQKGYGKDDASVARCAIQEAQHEGYDVILIDTAGRMHNKKNLM 322

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA-------GTTGLIMTK 265
             + K++++ K      P  ++ V +A  G ++L  ++ F+              +++TK
Sbjct: 323 MSLTKLMKINK------PDHIIYVGEALVGSDSLEHIKEFNRAIKDADQLRNIDSILLTK 376

Query: 266 MDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +D    + G ++ +  +   P+ FLGVG+  +DL    ++D    + 
Sbjct: 377 VDTVDNKIGQILNMAFSSNAPILFLGVGQTNSDLSNIGSEDIVNSLM 423


>gi|229019040|ref|ZP_04175881.1| Signal recognition particle protein [Bacillus cereus AH1273]
 gi|228742280|gb|EEL92439.1| Signal recognition particle protein [Bacillus cereus AH1273]
          Length = 316

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 6/173 (3%)

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ML A D +R AAI QL+    +                +A +A  +A+    D ++IDTA
Sbjct: 1   MLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTA 60

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   + FH   G TG++
Sbjct: 61  GRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVV 114

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +TK+DG  RGG  + I      P+ F G+GE ++ +E F  +  ++ I G  D
Sbjct: 115 LTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASRILGMGD 167


>gi|293385098|ref|ZP_06630925.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis R712]
 gi|291077625|gb|EFE14989.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis R712]
          Length = 175

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 80/162 (49%), Positives = 110/162 (67%)

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A+ ++ DVL++DTAGRL
Sbjct: 3   PADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERAKTEQADVLLVDTAGRL 62

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q + F      TGL++TK
Sbjct: 63  QNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTK 122

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           +DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 123 LDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 164


>gi|19113452|ref|NP_596660.1| signal recognition particle receptor alpha subunit Srp101
           [Schizosaccharomyces pombe 972h-]
 gi|74644172|sp|O43032|SRPR_SCHPO RecName: Full=Signal recognition particle receptor subunit alpha
           homolog; Short=SR-alpha; AltName: Full=Docking protein
           alpha; Short=DP-alpha
 gi|2950469|emb|CAA17783.1| signal recognition particle receptor alpha subunit Srp101
           [Schizosaccharomyces pombe]
          Length = 547

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 140/304 (46%), Gaps = 32/304 (10%)

Query: 34  DIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-V 88
           ++I  + L +     + +++++ L + ++  ++A ++ E +      K V     + + V
Sbjct: 249 NLIGGKYLKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTV 308

Query: 89  SELIHKMLMPLSKPFNW-----------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           ++     L  +  P                 +RP+ I ++GVNGVGK+T + K++  +  
Sbjct: 309 NKAFRDRLTQILTPSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLS 368

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTS------ADFVCSEIGSDAAALAYEAFKQAQA 191
              ++++AA DTFRS AI+QL +             +      G D++ +   A + A+ 
Sbjct: 369 NNFRILVAACDTFRSGAIEQLGVHVKNLQSLKGSSIELFAQGYGKDSSFVVKNAVEYAKQ 428

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV++IDTAGR HN+  LM  + K  +  K         + QV +A  G ++L Q + 
Sbjct: 429 NSFDVILIDTAGRRHNDQRLMGSLEKFTKATK------LDKIFQVAEALVGTDSLAQAKH 482

Query: 252 FHAVA---GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           F A        G I++K+D   +  G ++ +V   ++P+ F+G+G+  +DL         
Sbjct: 483 FQASLYHRPLDGFIISKVDTVGQLVGVMVGMVYAVRVPIIFVGIGQTYSDLRTLSVDWVV 542

Query: 308 AVIT 311
             + 
Sbjct: 543 DQLM 546


>gi|296504340|ref|YP_003666040.1| signal recognition particle protein [Bacillus thuringiensis BMB171]
 gi|296325392|gb|ADH08320.1| signal recognition particle protein [Bacillus thuringiensis BMB171]
          Length = 316

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 6/173 (3%)

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ML A D +R AAI QL+    +                +A +A  +A+    D ++IDTA
Sbjct: 1   MLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKAKEDHHDYVLIDTA 60

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRLH +  LM  + K+  V K      P  +  V+DA TGQ+A+   + FH   G TG++
Sbjct: 61  GRLHIDEELMDELAKVKEVAK------PDEIFLVVDAMTGQDAVNVAQSFHEQLGLTGVV 114

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +TK+DG  RGG  + I      P+ F G+GE ++ +E F  +  ++ I G  D
Sbjct: 115 LTKLDGDTRGGAALSIKAVTNTPIKFAGMGEKLDAIEAFHPERMASRILGMGD 167


>gi|149209827|ref|XP_001522288.1| hypothetical protein MGCH7_ch7g395 [Magnaporthe oryzae 70-15]
 gi|86196350|gb|EAQ70988.1| hypothetical protein MGCH7_ch7g395 [Magnaporthe oryzae 70-15]
          Length = 640

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 160/348 (45%), Gaps = 44/348 (12%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLK-LKEGITDIISSRRLDDGVREE----LEDLLIR 55
           + ++K  +++ S   K   G   +SL  +     +++  + L     ++    +ED L+R
Sbjct: 297 LESEKNKAQANS-SSKQDAGLIGSSLSTIGGLFRNVVGGKVLTREDLDKAMKGMEDHLLR 355

Query: 56  SDIGVAVAQKIVEELLTKRYA----------------KDVSVQRVLYDVSEL-IHKMLMP 98
            ++    A ++ E +  +                    + S+ R+L   S L + + +  
Sbjct: 356 KNVAREAAVRLCEGVEKELVGVKTGSFESINTRVQAAMEASLTRMLTPTSSLDLLREIDS 415

Query: 99  LSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           +++P        RP+V+ +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++Q
Sbjct: 416 VTQPSVTSLRKPRPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQ 475

Query: 158 LKIWADRT---------SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           L +                +      G DAAA+A +A   A  +  DV++IDTAGR HN+
Sbjct: 476 LAVHVRNLKELTAREGGQVELYQKGYGKDAAAVAKDAVSHAAQEGFDVVLIDTAGRRHND 535

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMT 264
             LM+ + K  +         P  +L V +A  G +++ Q   F+A  G      G I++
Sbjct: 536 QRLMSSLEKFAKF------AQPDKILMVGEALVGTDSVAQARNFNAAFGSGRSLDGFIIS 589

Query: 265 KMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K D      G L+ IV    +PV F+GVG+  +DL  F  K     + 
Sbjct: 590 KCDTVGTMVGTLVSIVHATNVPVLFVGVGQHYSDLRNFSVKWAVEKLL 637


>gi|294952735|ref|XP_002787438.1| signal recognition particle receptor alpha subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|239902410|gb|EER19234.1| signal recognition particle receptor alpha subunit, putative
           [Perkinsus marinus ATCC 50983]
          Length = 882

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 35/296 (11%)

Query: 28  LKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDV 79
           L   + +I  ++ L     + V     + L+  ++ + VA  I +     L+  R  +  
Sbjct: 299 LTRQLKNITGNQVLTNRDLEPVLATFCEQLMSKNVAMDVANAIADGVSSSLVGTRTGQFT 358

Query: 80  SVQRVLYD-VSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           SV   + D +++ I ++L P      L        + + + I+ +GVNGVGK+T + K++
Sbjct: 359 SVHTTVKDALTQSISRILTPKKSVDVLRAAMQAKANGQVYSIVFLGVNGVGKSTNLSKVA 418

Query: 133 KKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
             +   G L+V++ A DTFR+ A++QL+  A   + D      G DAA +A +    A+ 
Sbjct: 419 YYLRKKGGLRVLICACDTFRAGAVEQLRTHARCLNVDLFEKGYGKDAAEIAKQGLYYAKH 478

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              DV++IDTAGR+ +N  LM  + +++ V      + P  +L V +A  G +A+ Q+  
Sbjct: 479 NAYDVVLIDTAGRMQDNEPLMKSLARLVAV------NNPDLILFVGEALVGYDAIDQLTK 532

Query: 252 FHAVA------------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEG 294
           F                G  G+++TK D    + G  + +V     P+ F+G G+ 
Sbjct: 533 FDRALMDYSLSNKDSSNGIDGILLTKYDTVDDKVGAALSMVYITGEPIVFVGTGQK 588


>gi|58264896|ref|XP_569604.1| signal recognition particle binding protein [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|134109623|ref|XP_776926.1| hypothetical protein CNBC4160 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259606|gb|EAL22279.1| hypothetical protein CNBC4160 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57225836|gb|AAW42297.1| signal recognition particle binding protein, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 674

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/355 (22%), Positives = 138/355 (38%), Gaps = 75/355 (21%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
           S   +LT              + I++   L + V  E+E  L+  ++   +A+K+   + 
Sbjct: 339 SMFSRLTG-------------SKILTRNDL-EPVLIEMEKHLMSKNVAKDIAEKLCNSVG 384

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFN-------------------------W 105
                K +     +  +V  ++   L  +  P                            
Sbjct: 385 AALVGKKLGGLNSVKSEVQSVLSTSLTRVLTPKTSTDILLEIQRKRSSHLATLSTTSSPL 444

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           D    P+ +  VGVNGVGK+T + K+   +   GL+V++AA DTFRS A++QL++     
Sbjct: 445 DSGPDPYTLTFVGVNGVGKSTNLSKVCFWLLQNGLRVLIAACDTFRSGAVEQLRVHVRNL 504

Query: 166 S-------------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
                          +      G DAA +A +A   A+    DV++IDTAGR+ +N  LM
Sbjct: 505 GALGEEMGQGQGKRIELFERGYGKDAAGIAKDAIAYAKEHAFDVVLIDTAGRMQDNEPLM 564

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA---------------G 257
             + K++ V      + P  ++ V +A  G  A+ Q+  F                   G
Sbjct: 565 RALAKLVTV------NNPDKIVFVGEALVGNEAVDQLTKFDRALRDFSGAGVGGVARKRG 618

Query: 258 TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             G+I+TK D    + G  + +      P+ F+G G+   DL           + 
Sbjct: 619 IDGIILTKFDTIDDKVGAALSMTYITGQPILFVGCGQTYTDLRQLRVNHIVQALL 673


>gi|312135833|ref|YP_004003171.1| flagellar biosynthetic protein flhf [Caldicellulosiruptor
           owensensis OL]
 gi|311775884|gb|ADQ05371.1| flagellar biosynthetic protein FlhF [Caldicellulosiruptor
           owensensis OL]
          Length = 371

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 137/310 (44%), Gaps = 26/310 (8%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDII-----SSRRLDDGVREELEDLLIRSDIGVAVAQ 64
            ++ I++L K   S    LKE I         +         + + + LI++ +   +  
Sbjct: 77  QMTQIKELEKKIDSLEKALKEVIKKEQEESQQTKEASRKNFLDVMRENLIKNGVENEIVD 136

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            ++  +     + D S+  ++  +   I  ML   + P ++D S  P ++  VG  GVGK
Sbjct: 137 ILLSNV-----SGDGSINTIVNSMYREIKNMLGS-AAPLSFD-SKFPRIVFFVGPTGVGK 189

Query: 125 TTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT I K++ K+    G KV     DT+R AA++QLK +A+  +          +   +  
Sbjct: 190 TTTIAKIAAKLMFENGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEVDEYDGIIE 249

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                      DV+++DTAGR H N   M  +   +          P  +  +L ATT  
Sbjct: 250 ------SLADSDVVLVDTAGRSHKNQEHMDELKAYVA------KANPDEIFLLLSATTQP 297

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFV 302
           +  ++V   ++      +I+TK+D  +  G ++ I    + P+ ++  G+ + +D+E F 
Sbjct: 298 SVFKEVVNTYSFLDNYKVIITKVDEVSTYGNILNIRYFTQKPIAYITTGQNVPDDIEQFN 357

Query: 303 AKDFSAVITG 312
            + ++ +I G
Sbjct: 358 PEQYAKLIIG 367


>gi|187917955|ref|YP_001883518.1| cell division protein FtsY [Borrelia hermsii DAH]
 gi|119860803|gb|AAX16598.1| cell division protein FtsY [Borrelia hermsii DAH]
          Length = 284

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 161/286 (56%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + + I ++  ++     + E LED+L+ +DI   +  +I+E +      K    +  L  
Sbjct: 6   IFDKIKNLFKNQE-KTQIFENLEDILLEADIKNDIVIEIIEYIK---KVKVKDEKETLLK 61

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + + +   +    +P N + + R +++L++G+NGVGKT+ I KL+ K+ + G  V++AA 
Sbjct: 62  LKDFLKSYINQ--QPLNLE-NKRLNILLIIGINGVGKTSSIIKLANKLKNEGKNVLIAAA 118

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI Q+KI +++     +    GSDAAA+ +++   A++K  D+LIIDTAGRL N
Sbjct: 119 DTFRAAAIQQIKIQSEKIGIKVISQNQGSDAAAVIFDSISSAKSKNYDILIIDTAGRLQN 178

Query: 208 NSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + KM  V+K+  ++    +  + V+D+ +G+N   Q E+F+      G+I TK
Sbjct: 179 KENLIKELQKMDNVIKKQIIETDINYKKILVIDSISGKNVNNQAEIFNKAIEIDGIIATK 238

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            D ++R GG++ I    K P+YF   GE +  ++ F   D+   + 
Sbjct: 239 FDSSSRAGGILNISKLFKKPIYFFTFGEQVEHIKEFNTDDYLNRLL 284


>gi|145610183|ref|XP_366587.2| hypothetical protein MGG_02663 [Magnaporthe oryzae 70-15]
 gi|145017543|gb|EDK01906.1| hypothetical protein MGG_02663 [Magnaporthe oryzae 70-15]
          Length = 623

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 160/348 (45%), Gaps = 44/348 (12%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLK-LKEGITDIISSRRLDDGVREE----LEDLLIR 55
           + ++K  +++ S   K   G   +SL  +     +++  + L     ++    +ED L+R
Sbjct: 280 LESEKNKAQANS-SSKQDAGLIGSSLSTIGGLFRNVVGGKVLTREDLDKAMKGMEDHLLR 338

Query: 56  SDIGVAVAQKIVEELLTKRYA----------------KDVSVQRVLYDVSEL-IHKMLMP 98
            ++    A ++ E +  +                    + S+ R+L   S L + + +  
Sbjct: 339 KNVAREAAVRLCEGVEKELVGVKTGSFESINTRVQAAMEASLTRMLTPTSSLDLLREIDS 398

Query: 99  LSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           +++P        RP+V+ +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++Q
Sbjct: 399 VTQPSVTSLRKPRPYVMSIVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQ 458

Query: 158 LKIWADRT---------SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           L +                +      G DAAA+A +A   A  +  DV++IDTAGR HN+
Sbjct: 459 LAVHVRNLKELTAREGGQVELYQKGYGKDAAAVAKDAVSHAAQEGFDVVLIDTAGRRHND 518

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMT 264
             LM+ + K  +         P  +L V +A  G +++ Q   F+A  G      G I++
Sbjct: 519 QRLMSSLEKFAKF------AQPDKILMVGEALVGTDSVAQARNFNAAFGSGRSLDGFIIS 572

Query: 265 KMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K D      G L+ IV    +PV F+GVG+  +DL  F  K     + 
Sbjct: 573 KCDTVGTMVGTLVSIVHATNVPVLFVGVGQHYSDLRNFSVKWAVEKLL 620


>gi|321253682|ref|XP_003192816.1| signal recognition particle binding protein [Cryptococcus gattii
           WM276]
 gi|317459285|gb|ADV21029.1| signal recognition particle binding protein, putative [Cryptococcus
           gattii WM276]
          Length = 671

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 136/348 (39%), Gaps = 64/348 (18%)

Query: 22  ASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           AS         + +  S+ L       V  E+E  L+  ++   +A+K+ + +      K
Sbjct: 329 ASNQSSWSSMFSRLTGSKILTQNDLAPVLVEMEKHLMSKNVAKNIAEKLCDSVGAALVGK 388

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKPFN------------------------WDFSHRPH 112
            +     +  +V  ++   L  +  P                           D    P+
Sbjct: 389 KLGGLSSVKSEVQSVLSTSLTRVLTPKTSTDILLEIQRKRSSHLATLGTTSSPDSGPDPY 448

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------ 166
            +  VGVNGVGK+T + K+   +   GLKV++AA DTFRS A++QL++            
Sbjct: 449 TLTFVGVNGVGKSTNLSKVCFWLLQNGLKVLIAACDTFRSGAVEQLRVHVRNLGALGEEM 508

Query: 167 -------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
                   +      G DAA +A +A   A+    DV++IDTAGR+ +N  LM  + K++
Sbjct: 509 GQGKGKRIELFERGYGKDAAGIAKDAIAYAKEHAFDVVLIDTAGRMQDNEPLMRALAKLV 568

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA---------------GTTGLIMT 264
            V      + P  ++ V +A  G  A+ Q+  F                   G  G+I+T
Sbjct: 569 TV------NNPDKIVFVGEALVGNEAVDQLTKFDRALRDFSGAGVGGVARKRGIDGIILT 622

Query: 265 KMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K D    + G  + +      P+ F+G G+   DL           + 
Sbjct: 623 KFDTIDDKVGAALSMTYITGQPILFVGCGQTYTDLRQLRVNHIVQALL 670


>gi|238009706|gb|ACR35888.1| unknown [Zea mays]
          Length = 351

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 89/173 (51%), Gaps = 6/173 (3%)

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ML A D +R AAIDQL I   +           +  + +A    K+A+  K DV+I+DTA
Sbjct: 1   MLVAADVYRPAAIDQLTILGKKVGVPVYSEGTEAKPSQIAKNGLKEAKVNKADVIIVDTA 60

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL  +  +M  + ++ + +       P  VL V+DA TGQ A   V  F+   G TG I
Sbjct: 61  GRLQVDKAMMNELKEVKKAVN------PTEVLLVVDAMTGQEAAGLVSSFNDEIGITGAI 114

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +TK+DG +RGG  + +      P+ F+G GE I DLEPF     +  I G  D
Sbjct: 115 LTKLDGDSRGGAALSVKEVSGKPIKFVGQGERIEDLEPFYPDRMAQRILGMGD 167


>gi|320589543|gb|EFX02004.1| signal sequence receptor alpha [Grosmannia clavigera kw1407]
          Length = 669

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 143/322 (44%), Gaps = 44/322 (13%)

Query: 28  LKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAK-----D 78
           +     +++  + L     ++    +ED L+R ++    A ++ E +            +
Sbjct: 351 IGGLFRNVVGGKTLTREDLDKAMKGMEDHLLRKNVAREAAVRLCESVEADLVGVKTGNFE 410

Query: 79  VSVQRVLYDVSELIHKMLMPLSK-------------PFNWDFSHRPHVILVVGVNGVGKT 125
            +  RV   +   + KML P S              P       RP+VI +VGVNGVGK+
Sbjct: 411 STNARVKTALEAALTKMLTPTSSLDLLREIDAVTAPPVTSLRKPRPYVISIVGVNGVGKS 470

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-----------ADFVCSEI 174
           T + K+   +     +V++AAGDTFRS A++QL +                  +      
Sbjct: 471 TNLSKICFFLLQNRYRVLIAAGDTFRSGAVEQLAVHVRNLQELTSRDQNGSAVELYQRGY 530

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G DAAA+A +A   A  K  DV++IDTAGR HN+  LM+ + K  +         P  +L
Sbjct: 531 GKDAAAVAKDAVAFAAQKGFDVVLIDTAGRRHNDQRLMSSLEKFAKF------AHPDKIL 584

Query: 235 QVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFL 289
            V +A  G +++ Q   F++  G      G I++K D      G L+ +V    +P+ F+
Sbjct: 585 MVGEALVGTDSVAQARSFNSAFGSNRSLDGFIISKCDTVGGMVGTLVSLVHATNVPILFV 644

Query: 290 GVGEGINDLEPFVAKDFSAVIT 311
           GVG+  +DL  F  K     + 
Sbjct: 645 GVGQHYSDLRNFSVKWAVERLL 666


>gi|254994056|ref|ZP_05276246.1| SRP receptor alpha-subunit [Listeria monocytogenes FSL J2-064]
          Length = 174

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/162 (50%), Positives = 111/162 (68%)

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           AGDTFR+ AIDQL++W +RT  D +    GSD AA+ ++A + A+A+K DVL+ DTAGRL
Sbjct: 1   AGDTFRAGAIDQLEVWGERTGVDVIKQAEGSDPAAVMFDAVQAAKARKADVLLCDTAGRL 60

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            N   LM  + K+ RV+ R  P+APH VL VLDATTGQNA  Q + F      TG+I+TK
Sbjct: 61  QNKVNLMNELEKVKRVITREIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTK 120

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           +DGTA+GG +I I     IPV F+G+GE ++DL+ F A ++ 
Sbjct: 121 LDGTAKGGIVIAIRNELDIPVKFVGLGEQMDDLQAFDANEYV 162


>gi|320582191|gb|EFW96409.1| Signal recognition particle (SRP) receptor-alpha subunit [Pichia
           angusta DL-1]
          Length = 550

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 130/294 (44%), Gaps = 33/294 (11%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPF 103
           V+  L   LI+ ++   VA  ++ E+  +      +    + D   + + K L+ L  P 
Sbjct: 262 VKSALSTHLIKKNVAPDVANSLISEIEKELVGSTTANFTSVQDTAKKSLEKQLIKLLTPN 321

Query: 104 NW-----------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           N              ++ P+VI VVGVNGVGK+T + KL+  +     +V++ A DTFRS
Sbjct: 322 NSIDLLKEIQAKKASNNLPYVISVVGVNGVGKSTNLSKLAYWLLQNNYRVLITACDTFRS 381

Query: 153 AAIDQLKIWADRT--------SADFVCSEI--GSDAAALAYEAFKQAQAKKVDVLIIDTA 202
            A++QL+   +            +            A +A  A K A+    D++++DTA
Sbjct: 382 GAVEQLRTHVNNLTKLSPDQKQIELFEGGYGGADLVAKIATGAIKYAKQNNFDIVLLDTA 441

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----T 258
           GR HN++ LMA +    +         P  ++ V +A  G +++ Q + F+   G     
Sbjct: 442 GRRHNDTQLMAPLASFAKAAN------PDKIIMVGEALVGTDSVLQAQNFNKAFGSNRHL 495

Query: 259 TGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              I++K D      G ++ +V    IP+ F+G G+   DL         +++ 
Sbjct: 496 DFFIVSKCDTVGDLIGSMVNLVYATGIPILFVGNGQTYTDLRTLSVDWAVSMLM 549


>gi|293389071|ref|ZP_06633544.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis S613]
 gi|291081589|gb|EFE18552.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis S613]
          Length = 172

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/161 (49%), Positives = 110/161 (68%)

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DTFR+ AIDQL +W +R   + V    G D AA+ ++A ++A+ ++ DVL++DTAGRL 
Sbjct: 1   ADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDAVERAKTEQADVLLVDTAGRLQ 60

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
           N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q + F      TGL++TK+
Sbjct: 61  NKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQAKQFKETTDVTGLVLTKL 120

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 121 DGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 161


>gi|325116612|emb|CBZ52165.1| putative signal recognition particle protein [Neospora caninum
           Liverpool]
          Length = 520

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/332 (24%), Positives = 142/332 (42%), Gaps = 52/332 (15%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           + N+   + +  W  ++     +             + +     V EE+ DLL+ S    
Sbjct: 219 LENEVNEAATSGWFGRIASKLQT------------FTGK----NVAEEVIDLLLHS---- 258

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSK------PFNWDFSHRPHV 113
                +   L   R A   +V + +     + I K+L P                 R   
Sbjct: 259 -----VQSRLKGTRTASFTTVHQTVRMATRDAIVKILTPKKTVDVLRLALEAKAEGRVFS 313

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I+ +GVNGVGK+T + K++  +   G L V++AA DTFR+ A++QL+  +          
Sbjct: 314 IVFLGVNGVGKSTNLAKVAYYLKHKGNLDVLIAACDTFRAGAVEQLRTHSRCLQVPLFER 373

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAAA+A EA   A+ +  DV++IDTAGR+ +N  LM  + K++ +      + P  
Sbjct: 374 GYGKDAAAIAREALATARQEGRDVVLIDTAGRMQDNEPLMRSLAKLVAI------NNPDM 427

Query: 233 VLQVLDATTGQNALRQVEMFHAVA------------GTTGLIMTKMDG-TARGGGLIPIV 279
           +L V +A  G +A+ Q++ F+                  G+I+TK D    + G  + +V
Sbjct: 428 ILFVGEALVGNDAVDQLKKFNQALVDLTALGGRPPRTVDGIILTKFDTVDDKVGAALSMV 487

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                PV F+G G+   +L+          + 
Sbjct: 488 YITGQPVVFVGTGQKYPNLKKLNPTMVVKALL 519


>gi|159467803|ref|XP_001692081.1| alpha subunit of the SRP receptor [Chlamydomonas reinhardtii]
 gi|158278808|gb|EDP04571.1| alpha subunit of the SRP receptor [Chlamydomonas reinhardtii]
          Length = 687

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 53/316 (16%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVE----ELLTKRYAKDVSVQRVLYDVSEL-IHKMLM 97
           +    E++  L+  ++   +A ++ +     L  +R A    V   + +  E  +  +L 
Sbjct: 377 EPALAEMKRKLMERNVAEEIAAQVCDSVGRNLEGQRLAGFTGVAAFVRNAFEEALSGILN 436

Query: 98  PLSKPFNWDFSH-----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
             S     D        +P+VI+  GVNGVGK+T + K++  +    +KVM+AA DTFR+
Sbjct: 437 KRSVDVLLDIKKSQARGKPYVIVFCGVNGVGKSTNLAKIAYWLGSHNIKVMIAACDTFRA 496

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A++QLK    R            D A +AYEA +QA+   V V+++DTAGR+ +N  LM
Sbjct: 497 GAVEQLKTHCARLRVPLYERGYEKDPAKVAYEAVRQAEKDGVHVVLVDTAGRMQDNQPLM 556

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG--------------- 257
             +  +I +      + P+ VL V +A  G +A+ Q+  F+                   
Sbjct: 557 RALSTLISL------NNPNLVLFVGEALVGNDAVDQLTKFNKSLSDLAPTTAGAGGPGEG 610

Query: 258 ---------------------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGI 295
                                  G+++TK D    + G  + +V T   PV F+G G+  
Sbjct: 611 TGAVGRGQADGSALTRRHGGVIDGIVLTKFDTIDEKVGAALSMVYTSGAPVMFVGCGQTY 670

Query: 296 NDLEPFVAKDFSAVIT 311
            DL+    K     + 
Sbjct: 671 VDLKKLNVKSVVKSLL 686


>gi|328857956|gb|EGG07070.1| hypothetical protein MELLADRAFT_35731 [Melampsora larici-populina
           98AG31]
          Length = 601

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 137/294 (46%), Gaps = 33/294 (11%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           + ++++  L++ ++  +VA++I ++L  +   K      +   V + +   L  +  P  
Sbjct: 312 ILQQMQTQLLKKNVARSVAEEICDKLGVELLGKKRDGTSLRELVRDALSTSLRQILTPRT 371

Query: 105 W---------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
                       S +P+VI  VGVNGVGK+T + K++  +    L+V++AA DTFRS A+
Sbjct: 372 SVDLLMEVRRRQSGKPYVITFVGVNGVGKSTNLAKVAFWLLQNRLRVLIAACDTFRSGAV 431

Query: 156 DQLKIWADRTS--------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           +QL+      S         +      G DAA +A  A   A+    DV++IDTAGR+ +
Sbjct: 432 EQLRTHVRNLSSIDQPNGMVELFEKGYGKDAAGIAKAAIAHAETNGFDVVLIDTAGRMQD 491

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG---------T 258
           N  LM  +GK+I V      + P  V+ V +A  G  A+ Q++ F+              
Sbjct: 492 NEPLMRALGKLISV------NEPDKVIFVGEALVGNEAVDQLQGFNTSIQKFSGPISRSL 545

Query: 259 TGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            G+I+TK D    + G  + +    + P++F+G G+   DL           + 
Sbjct: 546 DGMILTKFDTIDDQVGAAVSMTFVTRQPIWFVGTGQTYTDLRVLRVGHVVEALM 599


>gi|222530118|ref|YP_002574000.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222456965|gb|ACM61227.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 372

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 141/311 (45%), Gaps = 27/311 (8%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGIT-----DIISSRRL-DDGVREELEDLLIRSDIGVAVA 63
            L+ I++L +   S    LKE I      DI  ++ L      + + + LI++ +   + 
Sbjct: 77  QLTQIKELERKIDSLEKVLKEVIKKEQEEDISQTKELSKKNFIDVMRENLIKNGVESEII 136

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
             +   L  +    +V     + ++ + I  ML  ++ P +++ S  P ++  VG  GVG
Sbjct: 137 NMLFSNLSGEASINNV-----VNNIYKGIKNMLG-VAAPLSFN-SKIPKIVFFVGPTGVG 189

Query: 124 KTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT I K++ K+    G KV     DT+R AA++QLK +A+  +          +   + 
Sbjct: 190 KTTTIAKIAAKLMFEDGKKVGFITADTYRIAAVEQLKTYAEIMNIKTKVWYEVDEYDRII 249

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                       DV+++DTAGR H N   M  +   +          P  V  +L ATT 
Sbjct: 250 EN------FSDSDVVLVDTAGRSHKNQEHMDELKAFVA------KANPDEVFLLLSATTQ 297

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301
            +  ++V   ++      +I+TK+D  +  G ++ I    + P+ ++  G+ + +D+E F
Sbjct: 298 PSVFKEVVNTYSFLNDYKVIVTKVDEVSTYGNILNIRYFTQKPIAYITTGQNVPDDIEQF 357

Query: 302 VAKDFSAVITG 312
             + F+ +I G
Sbjct: 358 NPEQFAKLIIG 368


>gi|56807691|ref|ZP_00365570.1| COG0541: Signal recognition particle GTPase [Streptococcus pyogenes
           M49 591]
          Length = 386

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           + A D +R AAIDQLK    + +           A  +  +  +QA+  + D ++IDTAG
Sbjct: 1   MIAADIYRPAAIDQLKTLGQQINVPVFDMGTDHSAVDIVRKGLEQARENRNDYVLIDTAG 60

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RL  +  LM  +  +  +        P+ +L V+D+  GQ A      F+     TG+++
Sbjct: 61  RLQIDEKLMEELRDVKAL------AQPNEILLVVDSMIGQEAANIAYEFNHQLSITGVVL 114

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           TK+DG  RGG  + +      P+ F G+GE I D+E F     S+ I G  D 
Sbjct: 115 TKIDGDTRGGAALSVREITGKPIKFTGIGEKITDIETFHPDRMSSRILGMGDL 167


>gi|289755028|ref|ZP_06514406.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           EAS054]
 gi|289695615|gb|EFD63044.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           EAS054]
          Length = 394

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 13/185 (7%)

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA------ 191
              +   +  D  R AA++QL++  +R          G+   +   +    A A      
Sbjct: 3   KDTRHCWSLCDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEAR 62

Query: 192 -KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DV+I+DTAGRL  +  LMA    +   +       P  VL VLDA  GQ+A+    
Sbjct: 63  AKHFDVVIVDTAGRLGIDEELMAQAAAIRDAIN------PDEVLFVLDAMIGQDAVTTAA 116

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F     ++ I
Sbjct: 117 AFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRI 176

Query: 311 TGCLD 315
            G  D
Sbjct: 177 LGMGD 181


>gi|171683961|ref|XP_001906922.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941941|emb|CAP67593.1| unnamed protein product [Podospora anserina S mat+]
          Length = 646

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 86/330 (26%), Positives = 143/330 (43%), Gaps = 45/330 (13%)

Query: 19  KGFASTSLK-LKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            G   T L  +     +++  + L     D   + +E+ L++ ++    A ++ E +  +
Sbjct: 322 SGLVGTGLSAIGGLFRNVVGGKVLTKQDLDKAMKGMEEHLLKKNVAREAAIRLCEGVEKE 381

Query: 74  RYAKDVSVQRVL-----YDVSELIHKMLMP------------LSKPFNWDFSH-RPHVIL 115
                      +       +   + KML P            ++ P        RP+V+ 
Sbjct: 382 LVGVKTGSFESINARIQKAMEASLTKMLTPTSSLDLLREIDAITSPSATSLRKARPYVMS 441

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---------S 166
           +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++QL +               
Sbjct: 442 IVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQLAVHVRNLKELTAREGGQ 501

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            +      G DAA +A +A   A  +  +V++IDTAGR HN+  LM+ + K  +      
Sbjct: 502 VELYQKGYGKDAATVAKDAVAYAAQEGFNVVLIDTAGRRHNDQRLMSSLEKFAKF----- 556

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVT 281
              P  +L V  A  G +++ Q   F+A  G      G I++K D      G L+ IV  
Sbjct: 557 -AQPDKILMV--ALVGTDSVAQARNFNAAFGSGRSLDGFIISKCDTVGDMVGTLVSIVHA 613

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             +PV F+GVG+  +DL  F  K     + 
Sbjct: 614 TNVPVLFVGVGQHYSDLRNFSVKWAVEKLL 643


>gi|119952879|ref|YP_945088.1| cell division protein FtsY [Borrelia turicatae 91E135]
 gi|119861650|gb|AAX17418.1| cell division protein FtsY [Borrelia turicatae 91E135]
          Length = 284

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 154/286 (53%), Gaps = 9/286 (3%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + + I ++  ++     + E+LED+L+ +DI   +  +I+E +   +   +      L D
Sbjct: 6   IFDKIKNLFKNKE-KTQIFEKLEDILLEADIKNDIVIEIIENIKKLKVKDEEETFLKLKD 64

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
               +   +   S       + R +++L++GVNGVGKT+ I KL+ K  + G  V++AA 
Sbjct: 65  ---FLKSYINQQSLNLE---NKRLNILLIIGVNGVGKTSSIIKLANKFKNEGKNVLIAAA 118

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AAI+Q+KI +++     +    GSDAAA+ +++   A+ K  D+LIIDTAGRL N
Sbjct: 119 DTFRAAAIEQIKIQSEKIGIKVISQNQGSDAAAVIFDSISSAKTKNYDILIIDTAGRLQN 178

Query: 208 NSILMAGIGKMIRVLKRLD--PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              L+  + KM  V+K+        +  + V+D+  G+N   Q E+F+      G+I TK
Sbjct: 179 KENLIKELQKMDNVIKKQMIKTDVNYKKILVIDSIAGKNINNQTEIFNKAIEIDGIIATK 238

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            D ++R GG+I I    K P+YF   GE +  ++ F   D+   + 
Sbjct: 239 FDSSSRAGGIINISKLFKKPIYFFTFGEQVEHIKEFNTDDYLNKLL 284


>gi|312212847|emb|CBX92929.1| similar to signal recognition particle receptor subunit alpha
           [Leptosphaeria maculans]
          Length = 641

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 82/324 (25%), Positives = 148/324 (45%), Gaps = 37/324 (11%)

Query: 19  KGFASTSL-KLKEGITDIISSRRLD-DGV---REELEDLLIRSDIGVAVAQKIVEELLTK 73
            G   +SL  +     +++  + L  + +    + +E  L++ ++ +  A ++ E +   
Sbjct: 323 SGLVGSSLGAIGGLFRNVVGGKTLTKEDLAKPLKGMEQHLLKKNVALEAAVRLCESVERD 382

Query: 74  RYAKDVSVQRVLYD-----VSELIHKMLMPLSK-------PFNWDFSHRPHVILVVGVNG 121
                      +       + + + K+L P S              + RP+V+ +VGVNG
Sbjct: 383 LVGMKTPSFTTIETTIKASMEKALTKILTPTSSLDLLREIQQTNATTSRPYVLSIVGVNG 442

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---------SADFVCS 172
           VGK+T + K++  +     +V++AA DTFRS A++QL++  DR            D    
Sbjct: 443 VGKSTNLSKIAFFLLQNHHRVLIAAADTFRSGAVEQLRVHVDRLKELSQREGGQVDLFEK 502

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAA +A +A   A+    +V++IDTAGR HN+  LM+ + K  ++        P  
Sbjct: 503 GYGKDAANIAADAVIFAEKNNFNVVLIDTAGRRHNDQRLMSSLEKFGKLAN------PDK 556

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVY 287
           +L V +A  G +++ Q   F+A  G      G +++K D      G L+ +V    IPV 
Sbjct: 557 ILMVGEALVGTDSVAQARNFNASFGAGRSLDGFVISKCDTVGDMVGTLVSMVHATGIPVV 616

Query: 288 FLGVGEGINDLEPFVAKDFSAVIT 311
           FLG G+  +DL        + ++ 
Sbjct: 617 FLGTGQHYSDLRTLNVGAVTRLLM 640


>gi|169609444|ref|XP_001798141.1| hypothetical protein SNOG_07814 [Phaeosphaeria nodorum SN15]
 gi|160701846|gb|EAT85280.2| hypothetical protein SNOG_07814 [Phaeosphaeria nodorum SN15]
          Length = 567

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 77/313 (24%), Positives = 139/313 (44%), Gaps = 36/313 (11%)

Query: 23  STSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           S+   +     +++  + L         + +E+ L++ ++      ++ E +        
Sbjct: 266 SSLGAIGGLFRNVVGGKTLTKEDLVKPIKGMEEHLLKKNVAREAVVRLCESVERDLIGMK 325

Query: 79  VSVQRVLYDVS------ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
                 L  +       +L+ ++            S RP+V+ +VGVNGVGK+T + K++
Sbjct: 326 TPNFTTLTKILTPTSSLDLLREI------AHTNSSSPRPYVLSIVGVNGVGKSTNLSKIA 379

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS---------ADFVCSEIGSDAAALAY 183
             +     +V++AA DTFRS A++QL++                D      G DAA +A 
Sbjct: 380 FFLLQNHHRVLIAAADTFRSGAVEQLRVHVKNLQELSKREGGEVDLFEKGYGKDAANIAA 439

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A   AQ    +V++IDTAGR HN+  LM+ + K  ++        P  +L V +A  G 
Sbjct: 440 DAVTHAQKNGFNVVLIDTAGRRHNDQRLMSSLEKFAKLAN------PDKILMVGEALVGT 493

Query: 244 NALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDL 298
           +++ Q   F+A  G      G +++K D      G L+ +V    IPV FLG G+  +DL
Sbjct: 494 DSVAQARNFNASFGAGRKLDGFVISKCDTVGDMVGTLVSMVHATGIPVVFLGTGQHYSDL 553

Query: 299 EPFVAKDFSAVIT 311
                   + ++ 
Sbjct: 554 RTLNVGAVTRLLM 566


>gi|330950745|gb|EGH51005.1| signal recognition particle protein [Pseudomonas syringae Cit 7]
          Length = 209

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 100/209 (47%), Gaps = 11/209 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++ + +   K ++    D +R AAI QL+  A+     F  S+I      +A  A K+A+
Sbjct: 121 ARFLKERKKKTVMVVSVDVYRPAAIKQLETLANDIGVTFFASDISQKPVDIAQAAIKEAR 180

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            K +DV+I+D AGRLH +  +M  I  + 
Sbjct: 181 LKFIDVVIVDPAGRLHVDVEMMGEIQALH 209


>gi|164428471|ref|XP_001728457.1| hypothetical protein NCU11187 [Neurospora crassa OR74A]
 gi|157072159|gb|EDO65366.1| hypothetical protein NCU11187 [Neurospora crassa OR74A]
          Length = 659

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 89/329 (27%), Positives = 152/329 (46%), Gaps = 43/329 (13%)

Query: 20  GFASTSLK-LKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKR 74
           G   T L  +     +++  + L     ++    +E+ L++ ++    A ++ E +  + 
Sbjct: 334 GLVGTGLSAIGGLFRNVVGGKVLTKEDLDKAMKGMEEHLLKKNVAREAAVRLCEGVEKEL 393

Query: 75  ----------------YAKDVSVQRVLYDVS--ELIHKMLMPLSKPFNWDFSHRPHVILV 116
                            A +VS+ ++L   S  +L+ ++    S P       RP+V+ +
Sbjct: 394 IGVKTGSFESINTRIQKAMEVSLTKMLTPTSSLDLLREIDSITSPPATSLRKARPYVMSI 453

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---------SA 167
           VGVNGVGK+T + K+   +     KV++AAGDTFRS A++QL +                
Sbjct: 454 VGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQLAVHVRNLKELTQREGGKV 513

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           +      G DAAA+A +A   A  +  DV++IDTAGR HN+  LM+ + K  +       
Sbjct: 514 ELYQKGYGKDAAAVAKDAVAFAAQEGFDVVLIDTAGRRHNDQRLMSSLEKFAKF------ 567

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTH 282
             P  +L V +A  G +++ Q + F+A  G      G I++K D      G ++ IV   
Sbjct: 568 AQPDKILMVGEALVGTDSVAQAKNFNASFGAGRSLDGFIISKCDTVGDMVGTIVSIVHAT 627

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            +PV F+GVG+  +DL  F  K     + 
Sbjct: 628 NVPVLFVGVGQHYSDLRNFSVKWAVEKLL 656


>gi|289622052|emb|CBI51230.1| unnamed protein product [Sordaria macrospora]
          Length = 676

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 150/321 (46%), Gaps = 43/321 (13%)

Query: 19  KGFASTSLK-LKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTK 73
            G   T L  +     +++  + L     ++    +E+ L++ ++    A ++ E +  +
Sbjct: 331 AGLVGTGLSAIGGLFRNVVGGKVLTKEDLDKTMKGMEEHLLKKNVAREAAVRLCEGVEKE 390

Query: 74  R----------------YAKDVSVQRVLYDVS--ELIHKMLMPLSKPFNWDFSHRPHVIL 115
                             A +VS+ ++L   S  +L+ ++    S P       RP+V+ 
Sbjct: 391 LIGVKTGSFESINTRIQKAMEVSLTKMLTPTSSLDLLREIDSITSPPATSLRKARPYVMS 450

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---------S 166
           +VGVNGVGK+T + K+   +     KV++AAGDTFRS A++QL +               
Sbjct: 451 IVGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQLAVHVRNLKELTQREGGK 510

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            +      G DAAA+A +A   A  +  DV++IDTAGR HN+  LM+ + K  +      
Sbjct: 511 VELYQKGYGKDAAAVAKDAVTFAAQEGFDVVLIDTAGRRHNDQRLMSSLEKFAKF----- 565

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVT 281
              P  +L V +A  G +++ Q + F+A  G      G I++K D      G ++ IV  
Sbjct: 566 -AQPDKILMVGEALVGTDSVAQAKNFNASFGAGRSLDGFIISKCDTVGDMVGTIVSIVHA 624

Query: 282 HKIPVYFLGVGEGINDLEPFV 302
             +PV F+GVG+  +DL  F 
Sbjct: 625 TNVPVLFVGVGQHYSDLRNFS 645


>gi|149176709|ref|ZP_01855320.1| GTP-binding signal recognition particle SRP54, G-domain
           [Planctomyces maris DSM 8797]
 gi|148844350|gb|EDL58702.1| GTP-binding signal recognition particle SRP54, G-domain
           [Planctomyces maris DSM 8797]
          Length = 446

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 115/262 (43%), Gaps = 15/262 (5%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           LI +++   +A  ++  L      + +        +   + +  +  S P      HR  
Sbjct: 193 LIDAEVDERIAHDLIARLKEHASPEQLKDSAASKSLLAALIESQIACSVPIRPVPGHR-K 251

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           V+ +VG  GVGKTT I KL+        +K+ L   DT+R AA++QL+ +A+        
Sbjct: 252 VVALVGPTGVGKTTTIAKLAANFRLRDNIKMGLVTVDTYRIAAVEQLRTYAEIIDLPMKV 311

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                +      E         +D+++IDTAGR  ++ + +  + ++ R +         
Sbjct: 312 VSTPKEMQQALDEMV------GLDLVLIDTAGRSPSDDLKIQELERLFREVP------ID 359

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V  V+  T+    L  +     VA  T +I+TK+D     G L+ +    K+PV +L  
Sbjct: 360 EVSLVMSMTSSVKTLEAIAQRFQVARPTSMILTKLDEAPVMGSLLTLSQNVKLPVRYLTT 419

Query: 292 GEGI-NDLEPFVAKDFSAVITG 312
           G+ + +D+EP  A   + +I G
Sbjct: 420 GQDVPDDIEPANAARMARLILG 441


>gi|326204604|ref|ZP_08194460.1| GTP-binding signal recognition particle SRP54 G- domain
           [Clostridium papyrosolvens DSM 2782]
 gi|325985171|gb|EGD46011.1| GTP-binding signal recognition particle SRP54 G- domain
           [Clostridium papyrosolvens DSM 2782]
          Length = 343

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/262 (26%), Positives = 119/262 (45%), Gaps = 17/262 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L+++++   +AQKI+E++  K  A++++   V   +  +I  +L   ++P N+    +P 
Sbjct: 94  LLKNEVDQDIAQKIIEKVAEKSDARNINDASV--AMLSVISSILGK-AEPINFRQDGKPT 150

Query: 113 VILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           VIL VG  GVGKTT + KL+   M      V     DT+R AA+DQLK +A+        
Sbjct: 151 VILFVGPTGVGKTTTLAKLAASFMLTNNKNVGFITADTYRIAAVDQLKTYAEILGIPI-- 208

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
               S A ++   + +       DV++IDTAG  + +      + K+I V          
Sbjct: 209 ----SIAYSVEEISSQIENYSDKDVILIDTAGCSYRDKQKFEELQKIIEVCNA------D 258

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V  VL AT      R +   +       LI TK+D T   G ++        P+ ++  
Sbjct: 259 EVFLVLSATVSSKNCRDIIKNYGFIPNYRLIFTKLDETPVYGSILNTKCYSDKPLAYITN 318

Query: 292 GEGI-NDLEPFVAKDFSAVITG 312
           G+ + +D+E       S  + G
Sbjct: 319 GQNVPDDIEVVNTDKISKNLLG 340


>gi|44836|emb|CAA32144.1| unnamed protein product [Neisseria gonorrhoeae]
          Length = 356

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 103/186 (55%), Gaps = 2/186 (1%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
               L W  +L +G A +  K+ + +  +    ++ + + EELE +LI  D+G+   + +
Sbjct: 112 EEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLITGDMGMEATEYL 171

Query: 67  VEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKT
Sbjct: 172 MKDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKT 231

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A
Sbjct: 232 TSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTTGDSAAVCFDA 290

Query: 186 FKQAQA 191
            + A+ 
Sbjct: 291 VQAAKR 296


>gi|51894122|ref|YP_076813.1| flagellar GTP-binding protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857811|dbj|BAD41969.1| flagellar GTP-binding protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 478

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 138/304 (45%), Gaps = 33/304 (10%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELE-------DLLIRSDIGVAVAQKIVEELL 71
            G       L++ +T ++ +R  D     EL+       + L+ + +   +A  I     
Sbjct: 197 AGLRREMADLRQAVTRLVEARP-DPAALLELKGYARKVYERLLDAGVAEGLALAI----- 250

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +++     +  R L  +   +++++ P + P   +   R  V+ ++G  GVGKTT + KL
Sbjct: 251 SRKVGTHATKGRAL--LRAELNQLMGPGA-PIQAEAGRR-RVVALIGPTGVGKTTTLAKL 306

Query: 132 SKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGSDAAALAYEAFKQA 189
           +   + + GLKV L   DTFR AA+DQL+ +AD  +      E       ALA+ A    
Sbjct: 307 AAHFALERGLKVGLITADTFRIAAVDQLRTYADILAIPLYTVERPTDVHQALAHNA---- 362

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D++++DT GR H +   MA + ++      L    P  V  V+   T    +R++
Sbjct: 363 ---DADLVLMDTGGRSHKDEERMAELQEL------LAEAQPDEVHLVVSLNTNPRDVRRM 413

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSA 308
              +   G    I TK D T+  G ++ I     +P+ ++  G+ + +DL P  + D+S 
Sbjct: 414 LERYLPLGVNRFIFTKADETSAPGLMLNIRAQWDLPISYVTDGQSVPDDLRPADSVDYSK 473

Query: 309 VITG 312
           +  G
Sbjct: 474 LFMG 477


>gi|116193091|ref|XP_001222358.1| hypothetical protein CHGG_06263 [Chaetomium globosum CBS 148.51]
 gi|88182176|gb|EAQ89644.1| hypothetical protein CHGG_06263 [Chaetomium globosum CBS 148.51]
          Length = 651

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/329 (26%), Positives = 144/329 (43%), Gaps = 43/329 (13%)

Query: 20  GFASTSLK-LKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKR 74
           G   +SL  +     +++  + L     E+    +E+ L++ ++    A ++ E +  + 
Sbjct: 326 GLVGSSLSAIGGLFRNVVGGKTLTKQDLEKAMKGMEEHLLKKNVAREAAVRLCEGVEKEL 385

Query: 75  YAKDVSVQRVL-----YDVSELIHKMLMPLSK-------------PFNWDFSHRPHVILV 116
                     +       +   + KML P S                      RP+V+ +
Sbjct: 386 LGVKTGNFESINARIQKAMEASLTKMLTPTSSLDLLREIDAITAPSATSLRKARPYVMSI 445

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---------SA 167
           VGVNGVGK+T + K+   +     KV++AAGDTFRS A++QL +                
Sbjct: 446 VGVNGVGKSTNLSKICFFLLQNKYKVLIAAGDTFRSGAVEQLAVHVRNLKELTAREGGQV 505

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           +      G DAAA+A +A   A  +  DV++IDTAGR HN+  LM+ + K  +       
Sbjct: 506 ELYQKGYGKDAAAVAKDAVAFAAQEGFDVVLIDTAGRRHNDQRLMSSLEKFAKF------ 559

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTH 282
             P  +L V +A  G +++ Q   F+A  G      G I++K D      G L+ IV   
Sbjct: 560 AQPDKILMVGEALVGTDSVAQARNFNAAFGSGRSLDGFIISKCDTVGDMVGTLVSIVHAT 619

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            +PV F+GVG+  +DL  F  K     + 
Sbjct: 620 NVPVLFVGVGQHYSDLRNFSVKWAVEKLL 648


>gi|50305435|ref|XP_452677.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641810|emb|CAH01528.1| KLLA0C10714p [Kluyveromyces lactis]
          Length = 600

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/339 (22%), Positives = 144/339 (42%), Gaps = 58/339 (17%)

Query: 24  TSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           TS         I+ ++ + +     V + L+  LI  ++   VA  +  ++         
Sbjct: 268 TSSPFSFLQKHILGNKTISEEDLKTVLDSLKQKLISKNVAPEVADHLCNQVSKDLIGSKT 327

Query: 80  ------------SVQRVLYDV------SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
                       S+Q+ L  +       +L+H++   ++K  +   +  P+V  VVGVNG
Sbjct: 328 ENWTSVDQTARESLQKCLSSILTPSVSVDLLHEIQKRINKKDSSGLND-PYVFSVVGVNG 386

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---------------- 165
           VGK+T + KL+  +    LKV++ A DTFRS A++QL++  +                  
Sbjct: 387 VGKSTNLSKLAFWLLKNNLKVLIVACDTFRSGAVEQLRVHVENLAQLTDHNHVRGTKNRR 446

Query: 166 ------SADFVCSEI--GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
                   +         +    +A +A K A+ +  DV+++DTAGR HN++ L   +  
Sbjct: 447 GKTGNEYVELFEGGYGGSNLVTKIAKQAIKYAKTEHFDVVLMDTAGRRHNDATL---MSP 503

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTAR-G 272
           +    ++ +P     ++ V +A  G ++++Q   F+   G        I++K D      
Sbjct: 504 LKSFAEQANP---DKIIMVGEALVGTDSVQQAHNFNQAFGKERNLDFFIISKCDTVGELL 560

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G ++ +V    IP+ F+GVG+   DL     +     + 
Sbjct: 561 GTMVNMVYATSIPILFIGVGQTYTDLRTLSVEWAVNSLL 599


>gi|326504320|dbj|BAJ90992.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 632

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 87/331 (26%), Positives = 147/331 (44%), Gaps = 38/331 (11%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           N +   +   W   + K  A           +++    L     + L+D L+  ++   +
Sbjct: 317 NAEAGQKKKGWFSSMFKSIAG---------NNVLEKSDLQPA-LKALKDRLMTKNVAEEI 366

Query: 63  AQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN----------WDFSHRP 111
           A+K+ E +      K + S  R+   V   + + L+ +  P                 +P
Sbjct: 367 AEKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKP 426

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +V++ VGVNGVGK+T + K++  +    L VM+AA DTFRS A++QL+  A R       
Sbjct: 427 YVVVFVGVNGVGKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFE 486

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K+I + K      P 
Sbjct: 487 KGYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINLNK------PD 540

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVV 280
            VL V +A  G +A+ Q+  F+                G+++TK D    + G  + +V 
Sbjct: 541 LVLFVGEALVGNDAVDQLNKFNQKLADLSTVPTARLIDGILLTKFDTIDDKVGAALSMVY 600

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
               PV F+G G+   DL+    K     + 
Sbjct: 601 ISGSPVMFVGCGQSYTDLKKLNVKSIVKTLL 631


>gi|325972883|ref|YP_004249947.1| signal recognition particle protein [Mycoplasma suis str. Illinois]
 gi|323651485|gb|ADX97567.1| signal recognition particle protein [Mycoplasma suis str. Illinois]
          Length = 457

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 130/295 (44%), Gaps = 18/295 (6%)

Query: 32  ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL-----TKRY--AKDVSVQRV 84
           +  +IS + LD  + E+L++  ++SD+ + VA +   EL       K+    K+   + +
Sbjct: 20  LAKMISEKDLD-LIFEDLKEEFVKSDVNLDVATQFFNELKVVIKEEKKIFLGKEEVQKEL 78

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG--LKV 142
              + E + + L   S+P         +  L+VGVNGVGKTT   KLS  +        +
Sbjct: 79  YQRIKEKLIESLGQKSQPLKL-RRKGVNKYLLVGVNGVGKTTTAAKLSYYLQKKEDIKTI 137

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
              + D  R+AA  QL         +    +  ++      +  +     K +V+I D+ 
Sbjct: 138 ETVSLDYNRAAAFTQLHQLVTPLGINSSFVDELTNEEQT-NKFREFLSGLKSEVVIFDSG 196

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           G L N+   +  + K+  ++       P   + V+DA +GQ +L  V+ F+       +I
Sbjct: 197 GILPNSPDSLVYLKKLAELIN------PTETIIVVDALSGQESLEIVKTFYNNIHIDSII 250

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           +TK D  +  G  +      K+P+ FLG GE I DL PF      + I G  D+ 
Sbjct: 251 VTKSDSLSPLGAALSSHYFLKLPIKFLGEGEHIQDLIPFYPDRIVSRIIGEGDFA 305


>gi|325989376|ref|YP_004249075.1| Signal recognition particle protein [Mycoplasma suis KI3806]
 gi|323574461|emb|CBZ40111.1| Signal recognition particle protein [Mycoplasma suis]
          Length = 457

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 18/295 (6%)

Query: 32  ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL-----TKRY--AKDVSVQRV 84
           +  +IS + LD  + E+L++  ++SD+ + VA +   EL       K+    K+   + +
Sbjct: 20  LAKMISEKDLD-LIFEDLKEEFVKSDVNLDVATQFFNELKVVIKEEKKIFLGKEEVQKEL 78

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG--LKV 142
              + E + + L   S+P         +  L+VGVNGVGKTT   KLS  +        +
Sbjct: 79  YQRIKEKLIESLGQKSQPLKL-RRKGVNKYLLVGVNGVGKTTTAAKLSYYLQKKEDIKTI 137

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
              + D  R+AA  QL         +    +  ++      +  +     K +V+I D+ 
Sbjct: 138 ETVSLDYNRAAAFTQLHQLVTPLGINSSFVDELTNEEQT-NKFREFLSGLKSEVVIFDSG 196

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           G L N+   +  + K+  ++           + V+DA +GQ +L  V+ F+       +I
Sbjct: 197 GILPNSPDSLVYLKKLAELINAT------ETIIVVDALSGQESLEIVKTFYNNIHIDSII 250

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYG 317
           +TK D  +  G  +      K+P+ FLG GE I DL PF      + I G  D+ 
Sbjct: 251 VTKSDSLSPLGAALSSHYFLKLPIKFLGEGEHIQDLIPFYPDRIVSRIIGEGDFA 305


>gi|170290943|ref|YP_001737759.1| GTP-binding signal recognition particle [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175023|gb|ACB08076.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 290

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 79/297 (26%), Positives = 135/297 (45%), Gaps = 16/297 (5%)

Query: 21  FASTSLKLKE-GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S   KL   GI     S++    +  ELE  L+   I  ++ ++I + +  K    + 
Sbjct: 2   LGSLIDKLSSLGIAKKKWSKKDVLNIFSELEIELLSRGIPPSLFERIRDRVSIKLEGVET 61

Query: 80  SVQRVLYDVSELIHKMLMPLSKPF---NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
                      +   +L    KP          +P  ++  G NGVGK+  I KL+K + 
Sbjct: 62  RGDPRKIVEDAIREAILEMTPKPLMVEELKGERKPFKVVFFGFNGVGKSLSIVKLAKYLQ 121

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           D G +V++ + DT+R+AA +QL+ +           + GSD +A+ ++A   A A+    
Sbjct: 122 DMGGRVLVVSADTYRAAAGEQLEGYCRAAGISIFKGQRGSDPSAVCFDAMSMASARGYSH 181

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           L+IDTAGR + N  L+  + K+ RV++      P   + VLD   G + L Q        
Sbjct: 182 LLIDTAGRNYLNKNLIEELRKIFRVVE------PDLRVLVLDGVAGNDVLSQC-DSFNEV 234

Query: 257 GTTGLIMTKMDGTARGGGLIPI--VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G   +I+TK+D    GG ++P+   +    PV F+G G+  +D+  F  +    +I 
Sbjct: 235 GYDAIIVTKVDA---GGPIVPLFASIHSGKPVLFVGTGQSFSDIATFDPRVAVELIL 288


>gi|291536023|emb|CBL09135.1| flagellar biosynthetic protein FlhF [Roseburia intestinalis M50/1]
          Length = 416

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 121/271 (44%), Gaps = 16/271 (5%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
             + L   L+ +++      +I++E   K      SV  +L +V +   KM++ L +P  
Sbjct: 157 FIKMLYRTLLENEVNEKYVNQILDE-AEKVMHSGSSVDAILSNVYQ---KMILKLGQPDT 212

Query: 105 WDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWA 162
              S  +P +I  VG  GVGKTT I K++ K     G+K+     DT+R AA +QL+++A
Sbjct: 213 ICVSGKKPRIIFFVGPTGVGKTTTIAKIASKYKLEMGMKIAFLTADTYRIAATEQLRVYA 272

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           +   A         +  A    A ++      D++ +DTAG  H N         M ++L
Sbjct: 273 NILDAPMSIIYSAEEMNA----AIERVSE--YDLIFVDTAGFSHKND---EQCNDMKKML 323

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             LD      V  V+ ATT    L ++   +       LI TK+D T   G +  I +  
Sbjct: 324 AGLDAAYEREVYLVVSATTKYKDLLEIADRYKEIADYKLIFTKLDETEAYGNIYNIKMYS 383

Query: 283 KIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
             P+ ++  G+ + +D+E F  +     + G
Sbjct: 384 GAPLSYMTNGQNVPDDIEEFNTQKIVKQLLG 414


>gi|240145482|ref|ZP_04744083.1| flagellar biosynthesis protein FlhF [Roseburia intestinalis L1-82]
 gi|257202456|gb|EEV00741.1| flagellar biosynthesis protein FlhF [Roseburia intestinalis L1-82]
          Length = 416

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/271 (26%), Positives = 121/271 (44%), Gaps = 16/271 (5%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
             + L   L+ +++      +I++E   K      SV  +L +V +   KM++ L +P  
Sbjct: 157 FIKMLYRTLLENEVNEKYVNQILDE-AEKVMHSGSSVDAILSNVYQ---KMILKLGQPDT 212

Query: 105 WDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWA 162
              S  +P +I  VG  GVGKTT I K++ K     G+K+     DT+R AA +QL+++A
Sbjct: 213 ICVSGKKPRIIFFVGPTGVGKTTTIAKIASKYKLEMGMKIAFLTADTYRIAATEQLRVYA 272

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           +   A         +  A    A ++      D++ +DTAG  H N         M ++L
Sbjct: 273 NILDAPMSIIYSAEEMNA----AIERVSE--YDLIFVDTAGFSHKND---EQCNDMKKML 323

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             LD      V  V+ ATT    L ++   +       LI TK+D T   G +  I +  
Sbjct: 324 AGLDAAYEREVYLVVSATTKYKDLLEIADRYKEIADYKLIFTKLDETEAYGNIYNIKMYS 383

Query: 283 KIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
             P+ ++  G+ + +D+E F  +     + G
Sbjct: 384 GAPLSYMTNGQNVPDDIEEFNTQKIVKQLLG 414


>gi|300708288|ref|XP_002996326.1| hypothetical protein NCER_100586 [Nosema ceranae BRL01]
 gi|239605619|gb|EEQ82655.1| hypothetical protein NCER_100586 [Nosema ceranae BRL01]
          Length = 415

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 154/307 (50%), Gaps = 26/307 (8%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD---VS 80
           T    K+G   + S++   D ++ ++E  L++ ++     + + E ++ +   ++   VS
Sbjct: 115 TKKAFKKGF-SLFSNKIHVDELKTKMELHLVKKNVDYNTTKILTECVINQLKEENVEYVS 173

Query: 81  VQRVLYDVSELIHKMLMPLS-KPFNWDFSHRP--HVILVVGVNGVGKTTVIGKLSKKMSD 137
                  VS ++ K++  +  K    D  ++     I  VGVNGVGK+T + K+   + +
Sbjct: 174 PDSFKKYVSTVLQKLIPSVDHKKLLKDIKNKKEAFSICFVGVNGVGKSTSLAKICYWLLE 233

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADR-----TSADFVCSEIGSDAAALAYEAFKQAQAK 192
             LKV +AA DTFR+ A++QLK+  DR      S  F     G D A++A  A + A ++
Sbjct: 234 NDLKVYIAACDTFRAGAVEQLKVHVDRFRQSGYSVGFYEKGYGKDDASVARTAIQIATSE 293

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K DV++IDTAGR+HN   LM  + K+I++      + P  ++ V +A  G ++L  ++ F
Sbjct: 294 KYDVILIDTAGRMHNKLSLMESLSKLIKI------NEPDFIVYVGEALVGVDSLDHIKEF 347

Query: 253 HAVA-------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
           +              L++TK+D    + G ++ +  T   PV+FLG G+  +DL    + 
Sbjct: 348 NKFISKGSIHRKIDSLLLTKVDTVDDKIGQILNMTFTSHAPVFFLGTGQANSDLSEITSG 407

Query: 305 DFSAVIT 311
           D    + 
Sbjct: 408 DIVNSLL 414


>gi|50556754|ref|XP_505785.1| YALI0F23375p [Yarrowia lipolytica]
 gi|4838528|gb|AAD31027.1|AF132597_1 signal sequence receptor alpha subunit [Yarrowia lipolytica]
 gi|49651655|emb|CAG78596.1| YALI0F23375p [Yarrowia lipolytica]
          Length = 557

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/322 (22%), Positives = 143/322 (44%), Gaps = 41/322 (12%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           + +       + +I+  + +     +++    E+ L++ ++   VA  + +++       
Sbjct: 244 SKSRFGF---LKNIMGGKTITQEDMDKVTAKVEEQLMKKNVAKEVAVHLCDQVSRSLVGC 300

Query: 78  DVSVQRVLYD-----VSELIHKMLMP--------LSKPFNWDFSHRPHVILVVGVNGVGK 124
             +    +       +++ + K+L P          +        RP+VI VVGVNGVGK
Sbjct: 301 TTNSWTTVEQTVQQAMADALRKILTPSASLDLLHEVQRHKKLGGGRPYVISVVGVNGVGK 360

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----------ADFVCSEI 174
           +T + K+   +    +++++AA DTFRS A++QL +  +R S           +      
Sbjct: 361 STNLSKIGFWLLQNKMRLLVAACDTFRSGAVEQLGVHVNRLSELAGRQGTGEVELFAQGY 420

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           G D A  A +A +  +    DV++IDTAGR H++  L   +G + +  KR  P+    ++
Sbjct: 421 GKDPAHTAEKAVEYGEKHGFDVVLIDTAGRRHSDKRL---MGDLEKFAKRARPN---KII 474

Query: 235 QVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFL 289
            V +A  G ++++Q   F+   G        +++K D      G ++ +     IPV F+
Sbjct: 475 MVGEALVGTDSVQQARNFNDAFGKDRNLDFFLISKCDTVGDMIGSIVNMTYATNIPVLFV 534

Query: 290 GVGEGINDLEPFVAKDFSAVIT 311
           G G+   DL          ++T
Sbjct: 535 GTGQHYTDLRTLSVDWAVRLLT 556


>gi|255718069|ref|XP_002555315.1| KLTH0G06380p [Lachancea thermotolerans]
 gi|238936699|emb|CAR24878.1| KLTH0G06380p [Lachancea thermotolerans]
          Length = 586

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 137/341 (40%), Gaps = 54/341 (15%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTK 73
            KG  ST          ++ ++++       V E+    LI  ++    A  +   +   
Sbjct: 252 KKG-QSTGGAFGFLQKHLLGNKKITKEDLSKVLEKFRQKLISKNVAPEAADHLTSRVSQD 310

Query: 74  RYAKDVSVQRVL---------YDVSELI-----HKMLMPLSKPFNWDFSHRPHVILVVGV 119
                 +    +           ++E++       +L  + +    +    P++  VVGV
Sbjct: 311 LVGSTTANWTSVELTARDSLQKSLTEILTPGVSVDLLREIQQKTGKNGKKTPYIFSVVGV 370

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-------------- 165
           NGVGK+T + KL+  +    L+V++ A DTFRS A++QL++  +                
Sbjct: 371 NGVGKSTNLSKLAFWLLQNNLRVLVVACDTFRSGAVEQLRVHVENLAQLTDEAHIRGSKN 430

Query: 166 --------SADFVCSEI--GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
                     +   +          +A +A K A  +  DV+++DTAGR HN+  LM+ +
Sbjct: 431 RRGKSGNDHIELFEAGYGGSDLVTKIAKQAIKYASDQNFDVVLMDTAGRRHNDPTLMSPL 490

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTAR 271
                     D   P  ++ V +A  G ++++Q + F+A  G        I++K D    
Sbjct: 491 KPF------ADQAKPDKIIMVGEALVGTDSVQQAKNFNAAFGKERNLDFFIISKCDTVGE 544

Query: 272 G-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             G ++ +V    IP+ F+GVG+   DL     +     + 
Sbjct: 545 MLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVEWAVDTLM 585


>gi|156847719|ref|XP_001646743.1| hypothetical protein Kpol_1023p54 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117423|gb|EDO18885.1| hypothetical protein Kpol_1023p54 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 612

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 142/344 (41%), Gaps = 60/344 (17%)

Query: 22  ASTSLKLKEGI----TDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTK 73
           A T+  L          ++ ++ + D   +    +L+D LI  ++    A  + +++   
Sbjct: 274 AKTNSTLNSAFGFLQKHLLGNKTITDDDLKSALTKLKDQLITKNVAPEAADFLTQQVSRD 333

Query: 74  RYAKDVSVQRVLYD-----VSELIHKMLMPL------------SKPFNWDFSHRPHVILV 116
                 +    + +     +++ I ++L P             +     D    P+V  V
Sbjct: 334 LVGSKTANWTSVENAAHESLTKAITQILTPGVSVDLLHQIQKKTSQPGPDGKKVPYVFSV 393

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG- 175
           VGVNGVGK+T + KL+  +    LKV++ A DTFRS A++QL++  +  +     S +  
Sbjct: 394 VGVNGVGKSTNLSKLAFWLLQNNLKVLIVACDTFRSGAVEQLRVHVENLAQLTDESHVRG 453

Query: 176 -----------------------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
                                       +A +A K A     D++++DTAGR HN++ LM
Sbjct: 454 SKNKRGKSGNDYVELFEAGYGGSDLVTKIAKQAIKYASDNDFDIVLMDTAGRRHNDATLM 513

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDG 268
           + +       K      P  ++ V +A  G ++++Q + F+   G        I++K D 
Sbjct: 514 SPLKSFAEQAK------PDKIIMVGEALVGTDSVQQAKNFNNAFGKNRNLDFFIVSKCDT 567

Query: 269 TARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                G ++ +V    IP+ F+GVG+   DL     K     + 
Sbjct: 568 VGGMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVKWAVDTLM 611


>gi|172707|gb|AAA35093.1| SRP receptor alpha-chain homologue [Saccharomyces cerevisiae]
          Length = 621

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 140/329 (42%), Gaps = 56/329 (17%)

Query: 33  TDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD- 87
             ++ ++ +++     V E+L   LI  ++    A  + +++         +    + + 
Sbjct: 298 KHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENT 357

Query: 88  ----VSELIHKMLMP-----LSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKL 131
               +++ + ++L P     L +      S +       P+V  +VGVNGVGK+T + KL
Sbjct: 358 ARESLTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKL 417

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------------- 175
           +  +     KV++ A DTFRS A++QL++  +  +     S +                 
Sbjct: 418 AFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVEL 477

Query: 176 --------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                        +A +A K A+ +  D++++DTAGR HN+  LM+ +          D 
Sbjct: 478 FEAGYGGSDLVTKIAKQAIKYARDQNFDIVLMDTAGRRHNDPTLMSPLKSF------ADQ 531

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTH 282
             P  ++ V +A  G ++++Q + F+   G        I++K D      G ++ +V   
Sbjct: 532 AKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFIISKCDTVGEMLGTMVNMVYAT 591

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            IP+ F+GVG+   DL     K     + 
Sbjct: 592 GIPILFVGVGQTYTDLRTLSVKWAVNTLM 620


>gi|50288847|ref|XP_446853.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526162|emb|CAG59786.1| unnamed protein product [Candida glabrata]
          Length = 605

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 135/338 (39%), Gaps = 56/338 (16%)

Query: 24  TSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           T          ++ ++ + +     V E+ +  LI  ++    A  +++++         
Sbjct: 273 TKSAFGFLQKHLLGNKTITEKDIHEVLEKFKQKLITKNVSPEAADYLLKQVSRDLVGSRT 332

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPF----------------NWDFSHRPHVILVVGVNGV 122
                + + V + + K L  +  P                 + D    P+V  VVGVNGV
Sbjct: 333 DNWTSVENTVKQAVSKSLTEVLTPGVSVDLLHEIQKKTGNRSADGKKNPYVFSVVGVNGV 392

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------------- 165
           GK+T + KL+  +     ++++ A DTFRS A++QL++  +                   
Sbjct: 393 GKSTNLSKLAFWLLQNNFRILIVACDTFRSGAVEQLRVHVENLAQLMDEKHIRGSKNSRG 452

Query: 166 -----SADFVCSEI--GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
                  +   +          +A +A K A+ +  D++++DTAGR HN+  L   +  +
Sbjct: 453 KSGNDYIELFEAGYGGSDLVTKIAKQAIKYAKEQDFDIVLMDTAGRRHNDPTL---MSPL 509

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-G 273
               ++ +P     ++ V +A  G ++++Q   F+   G        I++K D      G
Sbjct: 510 KNFAEQANP---DKIIMVGEALVGTDSVQQARNFNNAFGKNRNLDFFIISKCDTVGEMLG 566

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            ++ +V    IP+ F+GVG+   DL           + 
Sbjct: 567 TMVNMVYATGIPILFVGVGQTYTDLRTLSVNWAVNTLM 604


>gi|220929447|ref|YP_002506356.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Clostridium cellulolyticum H10]
 gi|219999775|gb|ACL76376.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Clostridium cellulolyticum H10]
          Length = 389

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 17/262 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L+++++   +A KI+E++  K  A++++   V+      +   L+  ++P N+    +P 
Sbjct: 140 LLKNEVDQDIAHKIIEKVAEKSDARNINDASVVMLS---VISSLLGKAEPINFRQDGKPT 196

Query: 113 VILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           VIL VG  GVGKTT + KL+   M      V     DT+R AA+DQLK +A+        
Sbjct: 197 VILFVGPTGVGKTTTLAKLAASFMLTNNKNVGFITADTYRIAAVDQLKTYAEILGIPI-- 254

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
               S A ++   + +       DV++IDTAG  + +      + K+I V +        
Sbjct: 255 ----SIAYSVEEISSQIEDYSDKDVVLIDTAGCSYRDKQKFEELQKIIEVCQA------D 304

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V  VL AT      R +   +       LI TK+D T   G ++        P+ ++  
Sbjct: 305 EVFLVLSATVSSKNCRDIIKNYGFIQDYRLIFTKLDETPVYGSILNTKCYSNKPLAYITN 364

Query: 292 GEGI-NDLEPFVAKDFSAVITG 312
           G+ + +D+E    +  S  + G
Sbjct: 365 GQNVPDDIEMVNTEKISKNLLG 386


>gi|260361313|ref|ZP_05774415.1| putative signal recognition particle protein [Vibrio
           parahaemolyticus K5030]
 gi|308115526|gb|EFO53066.1| putative signal recognition particle protein [Vibrio
           parahaemolyticus K5030]
          Length = 197

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 11/197 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + + +I    RL +        E+   L+ +D+ + V ++ V  +  K   
Sbjct: 2   FENLTDRLSKTLKNISGKGRLTEDNIKETLREVRMALLEADVALPVVREFVNRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  VEVSKSLTPGQEFIKIVQAELEAVMGESNEALNL-AAQPPAVLLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           SK + +    KV++ + D +R AAI QL+  A     DF  S        +A  A   A+
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLASDIGVDFFPSSPDQKPLDIANAAIDHAK 180

Query: 191 AKKVDVLIIDTAGRLHN 207
            K  DVLI+DTAGRL  
Sbjct: 181 KKFYDVLIVDTAGRLAI 197


>gi|325973669|ref|YP_004250733.1| signal recognition particle-docking protein FtsY [Mycoplasma suis
           str. Illinois]
 gi|325990112|ref|YP_004249811.1| cell division protein FtsY [Mycoplasma suis KI3806]
 gi|323575197|emb|CBZ40862.1| Cell division protein FtsY [Mycoplasma suis]
 gi|323652271|gb|ADX98353.1| signal recognition particle-docking protein FtsY [Mycoplasma suis
           str. Illinois]
          Length = 317

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 78/274 (28%), Positives = 140/274 (51%), Gaps = 17/274 (6%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM---- 97
           ++ ++  + ++LI+ D  + +A+++  E + K   K ++   +      LI  ++     
Sbjct: 33  EEKIKSSILEMLIKLDFQLELAKEVTNETIEKL--KKLNSIDISVIKENLISSLIECYNS 90

Query: 98  ------PLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL--KVMLAAGD 148
                  +   FN +  S + +V  +VG NGVGKT+ I KL   +       K++L AGD
Sbjct: 91  KNESSKNVEDNFNLNIVSDKTNVFFIVGSNGVGKTSSIAKLVYFLKKENYNKKILLVAGD 150

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           TFR+ A++QL I A+R + + V         +L Y   K+      D++I D++GR +NN
Sbjct: 151 TFRAGAVEQLSILAERLNVEIVTPREKETVNSLIYRVLKEMSR--YDLIIFDSSGRQYNN 208

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             L++ I K  +++ ++    P   L VLD+T G+ +  +V+    +   TG+I+TKMD 
Sbjct: 209 QKLISEIQKNFKLVHKMLNRDPEETLLVLDSTLGKFSFEEVKKIFNILPITGIILTKMDH 268

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
           T RGG +  +      P+ F+  GE   D++PF 
Sbjct: 269 TVRGGVIYNLKTEFPTPIKFICYGEKEQDIQPFD 302


>gi|221057428|ref|XP_002261222.1| signal recognition particle receptor alpha subunit [Plasmodium
           knowlesi strain H]
 gi|194247227|emb|CAQ40627.1| signal recognition particle receptor alpha subunit, putative
           [Plasmodium knowlesi strain H]
          Length = 595

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 153/314 (48%), Gaps = 35/314 (11%)

Query: 26  LKLKEGITDIIS-SRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYAKD-- 78
            KL + I  + S + ++++   E +    ++ L+  ++   +   ++E++      K   
Sbjct: 287 NKLNDSILKVFSYNSKIEENDIESILQGVKNKLLSKNVAAGICDTLIEKMKGNLIGKKKT 346

Query: 79  ---VSVQRVLYDV-SELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              ++V++ +  V S+ I  +L+P      L          + + I+ +GVNGVGK+T +
Sbjct: 347 LFSMNVKKTVSTVLSDTIQSILIPKESVDILRAALEAKSIGKLYSIVFLGVNGVGKSTNL 406

Query: 129 GKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            K+   +   G LK+M+AA DTFR+ A++QL+  A+           G DAAA+A EA  
Sbjct: 407 AKVCYYLKTKGNLKIMIAACDTFRAGAVEQLRTHANCLDVFLYEKGYGKDAAAIAKEAIA 466

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            A+ +  +V++IDTAGR+ +N  LM  +GK+I +      + P  +L V +A  G +A+ 
Sbjct: 467 YAKKENFNVILIDTAGRMQDNEPLMRSLGKLILI------NNPDFILFVGEALVGNDAID 520

Query: 248 QVEMFHAVA----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           Q++ F+                G+++TK D    + G  + +V     P+ F+G+G+   
Sbjct: 521 QLKKFNQALTDATCNSNKRTIDGILLTKFDTVDDKVGTALSMVYLTGKPIVFVGIGQKYT 580

Query: 297 DLEPFVAKDFSAVI 310
            L+ F        +
Sbjct: 581 HLKKFNVSMVVKAL 594


>gi|255577019|ref|XP_002529394.1| signal recognition particle receptor alpha subunit, putative
           [Ricinus communis]
 gi|223531142|gb|EEF32990.1| signal recognition particle receptor alpha subunit, putative
           [Ricinus communis]
          Length = 618

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 145/332 (43%), Gaps = 38/332 (11%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
              K  ++   W   + +  A  +   K  +          +   + L+D L+  ++   
Sbjct: 302 KESKPGAKKKGWFSSMFQSIAGKANLEKSDL----------EPALKALKDRLMTKNVAEE 351

Query: 62  VAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN----------WDFSHR 110
           +A+K+ E +      K + S  R+   V   + + L+ +  P                 +
Sbjct: 352 IAEKLCESVAASLEGKKLASFTRISSTVQAAMEEALVRILTPKRSIDILRDVHAAKEQKK 411

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+V++ VGVNGVGK+T + K++  +    + VM+AA DTFRS A++QL+  A R      
Sbjct: 412 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIF 471

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 D A +A EA ++A     DV+++DTAGR+ +N  LM  + K+I        + P
Sbjct: 472 EKGYEKDPAIVAKEAIQEAARYGSDVVLVDTAGRMQDNEPLMRALSKLI------YLNNP 525

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIV 279
             VL V +A  G +A+ Q+  F+                G+++TK D    + G  + +V
Sbjct: 526 DLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMV 585

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                PV F+G G+   DL+    K     + 
Sbjct: 586 YISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 617


>gi|270706059|ref|ZP_06223091.1| cell division protein FtsY-like protein [Haemophilus influenzae
           HK1212]
 gi|270315790|gb|EFA27914.1| cell division protein FtsY-like protein [Haemophilus influenzae
           HK1212]
          Length = 162

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 71/161 (44%), Positives = 106/161 (65%), Gaps = 1/161 (0%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDF 107
           LE+ L+ +DIGV    KI++ L      K++    +LY  +   +  +L P+++P   D 
Sbjct: 1   LEEQLLIADIGVPTTSKIIKNLTEHASRKELQDAELLYQQLKVEMADILEPVARPLEIDS 60

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           + +P+VIL+VGVNGVGKTT IGKL++K    G  VMLAAGDTFR+AA++QL++W +R   
Sbjct: 61  TKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNHI 120

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             V    GSD+A++ ++A + A A+ +D+LI DTAGRL N 
Sbjct: 121 PVVAQSTGSDSASVIFDAMQSAAARNIDILIADTAGRLQNK 161


>gi|54299348|ref|NP_982463.2| AAL079Cp [Ashbya gossypii ATCC 10895]
 gi|51890935|gb|AAS50287.2| AAL079Cp [Ashbya gossypii ATCC 10895]
          Length = 586

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 72/325 (22%), Positives = 136/325 (41%), Gaps = 55/325 (16%)

Query: 36  ISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYDVSE 90
           + ++ +D+     + E+ +  LI  ++  A A  +   +  +    K  S   V     +
Sbjct: 267 LGNKTIDEGDLHAILEKFKKHLIGKNVAPAAADYLTSRVSEQLVGLKTASWTSVEQTARD 326

Query: 91  LIHKMLMPLSKPF---------------NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            + + L+ +  P                  D    P+V  +VGVNGVGK+T + KL+  +
Sbjct: 327 ALEQALISILTPGVSVDLLHEIQKKVGNKVDAKCDPYVFSIVGVNGVGKSTNLSKLAFWL 386

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------------------SADFVCSE 173
                KV++ A DTFRS A++QL++  +                        + +   + 
Sbjct: 387 LQNKFKVLIVACDTFRSGAVEQLRVHVENLAQLTDDNHVRGSKNKRGKSGNDAVELFEAG 446

Query: 174 I--GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                    +A +A K A+ ++ DV+++DTAGR HN++ LM+ +          D   P 
Sbjct: 447 YGGSDLVTKIAKQAIKYAREQQFDVVLMDTAGRRHNDATLMSPLKSF------ADQAKPD 500

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTHKIPV 286
            ++ V +A  G ++++Q + F+   G        I++K D      G ++ +V    IP+
Sbjct: 501 KIIMVGEALVGTDSVQQAKNFNQAFGKDRNLDFFIISKCDTVGEMLGTMVNMVYATGIPI 560

Query: 287 YFLGVGEGINDLEPFVAKDFSAVIT 311
            F+GVG+   DL           + 
Sbjct: 561 LFIGVGQTYTDLRTLSVTWAVNSLL 585


>gi|218133684|ref|ZP_03462488.1| hypothetical protein BACPEC_01553 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991059|gb|EEC57065.1| hypothetical protein BACPEC_01553 [Bacteroides pectinophilus ATCC
           43243]
          Length = 413

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 112/262 (42%), Gaps = 12/262 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           LI +++    A  I+ E+ +    K+ S+  +L  V +   K+++ L +P       +P 
Sbjct: 161 LIDNEVNEKYANAIINEV-SGSIKKEASIDSLLGCVYQ---KIILKLGEPVYMTKGDKPK 216

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           VI+ +G  GVGKTT I KL+         KV     DT+R AA++QL  +A         
Sbjct: 217 VIMFIGPTGVGKTTTIAKLASYYKLEKQYKVAFITADTYRIAAVEQLNTYASIIECPV-- 274

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
               +   ++   A      K  D++ +DTAGR H +   M  + ++  ++  L      
Sbjct: 275 ----NVVYSVDEIAQSLEDFKDFDLIFVDTAGRSHKDKEQMLELHELRDMVAGLSDTFDL 330

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
                L ATT    +  +   +A      LI TK+D T   G ++ I +     + +   
Sbjct: 331 ECYLTLSATTKYKDMLDITGMYADIPDYRLIFTKLDETCAYGNILNIRMATGAQLSYTTT 390

Query: 292 GEGIN-DLEPFVAKDFSAVITG 312
           G+ +  D+E    +  +  + G
Sbjct: 391 GQNVPNDIEVINEQAIARQLLG 412


>gi|225445848|ref|XP_002278056.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 616

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 81/332 (24%), Positives = 148/332 (44%), Gaps = 38/332 (11%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
            + K+ ++   W   + +  A  +   K  +          +   + L+D L+  ++   
Sbjct: 300 KDSKMETKKKGWFSAMFQSIAGKANLEKADL----------EPALKALKDRLMTKNVAEE 349

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-----DVSELIHKMLMP------LSKPFNWDFSHR 110
           +A+K+ E +      K ++    +       + E + ++L P      L          +
Sbjct: 350 IAEKLCESVAASLEGKKLASFTRVSSTVQAAMEEALVRILTPRRSIDILRDVHAAKEQRK 409

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+V++ VGVNGVGK+T + K++  +    + VM+AA DTFRS A++QL+  A R      
Sbjct: 410 PYVVVFVGVNGVGKSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIF 469

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 D A +A EA ++A     DV+++DTAGR+ +N  LM  + K++ +      + P
Sbjct: 470 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLVNL------NNP 523

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIV 279
             VL V +A  G +A+ Q+  F+                G+++TK D    + G  + +V
Sbjct: 524 DLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPKPQLIDGILLTKFDTIDDKVGAALSMV 583

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                PV F+G G+   DL+    K     + 
Sbjct: 584 YISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 615


>gi|309804264|ref|ZP_07698341.1| SRP54-type protein, helical bundle domain protein [Lactobacillus
           iners LactinV 11V1-d]
 gi|308163667|gb|EFO65937.1| SRP54-type protein, helical bundle domain protein [Lactobacillus
           iners LactinV 11V1-d]
          Length = 209

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 12/209 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S KL++ +  +    ++ +        E+   L+ +D+   V +K ++ +  +  
Sbjct: 2   AFENLSEKLQKALRKLTGKGKISENDINQASREIRLALLEADVNFKVVKKFIKTIKAEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           L+  +  +   + +L AGD +R AAIDQLK      +     SE  +D  A+      QA
Sbjct: 121 LANYLIKNKKARPLLIAGDIYRPAAIDQLKTIGASLNVPVY-SENNTDVVAIVENGLMQA 179

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
                D +IIDTAGRL  +  LM  + K 
Sbjct: 180 DRNHNDYVIIDTAGRLEIDDQLMDEVKKY 208


>gi|151942264|gb|EDN60620.1| Signal recognition particle (SRP) subunit [Saccharomyces cerevisiae
           YJM789]
 gi|259145529|emb|CAY78793.1| Srp101p [Saccharomyces cerevisiae EC1118]
          Length = 621

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 140/329 (42%), Gaps = 56/329 (17%)

Query: 33  TDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD- 87
             ++ ++ +++     V E+L   LI  ++    A  + +++         +    + + 
Sbjct: 298 KHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENT 357

Query: 88  ----VSELIHKMLMP-----LSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKL 131
               +++ + ++L P     L +      S +       P+V  +VGVNGVGK+T + KL
Sbjct: 358 ARESLTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKL 417

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------------- 175
           +  +     KV++ A DTFRS A++QL++  +  +     S +                 
Sbjct: 418 AFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVEL 477

Query: 176 --------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                        +A +A K ++ +  D++++DTAGR HN+  LM+ +          D 
Sbjct: 478 FEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSF------ADQ 531

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTH 282
             P  ++ V +A  G ++++Q + F+   G        I++K D      G ++ +V   
Sbjct: 532 AKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFIISKCDTVGEMLGTMVNMVYAT 591

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            IP+ F+GVG+   DL     K     + 
Sbjct: 592 GIPILFVGVGQTYTDLRTLSVKWAVNTLM 620


>gi|6320498|ref|NP_010578.1| Srp101p [Saccharomyces cerevisiae S288c]
 gi|2507410|sp|P32916|SRPR_YEAST RecName: Full=Signal recognition particle receptor subunit alpha
           homolog; Short=SR-alpha; AltName: Full=Docking protein
           alpha; Short=DP-alpha
 gi|1230656|gb|AAB64468.1| Srp101p: Signal recognition particle receptor alpha subunit homolog
           (Swiss Prot. accession number P32916) [Saccharomyces
           cerevisiae]
 gi|285811307|tpg|DAA12131.1| TPA: Srp101p [Saccharomyces cerevisiae S288c]
          Length = 621

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 140/329 (42%), Gaps = 56/329 (17%)

Query: 33  TDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD- 87
             ++ ++ +++     V E+L   LI  ++    A  + +++         +    + + 
Sbjct: 298 KHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENT 357

Query: 88  ----VSELIHKMLMP-----LSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKL 131
               +++ + ++L P     L +      S +       P+V  +VGVNGVGK+T + KL
Sbjct: 358 ARESLTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKL 417

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------------- 175
           +  +     KV++ A DTFRS A++QL++  +  +     S +                 
Sbjct: 418 AFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVEL 477

Query: 176 --------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                        +A +A K ++ +  D++++DTAGR HN+  LM+ +          D 
Sbjct: 478 FEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSF------ADQ 531

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTH 282
             P  ++ V +A  G ++++Q + F+   G        I++K D      G ++ +V   
Sbjct: 532 AKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFIISKCDTVGEMLGTMVNMVYAT 591

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            IP+ F+GVG+   DL     K     + 
Sbjct: 592 GIPILFVGVGQTYTDLRTLSVKWAVNTLM 620


>gi|190404765|gb|EDV08032.1| hypothetical protein SCRG_00238 [Saccharomyces cerevisiae RM11-1a]
 gi|323355613|gb|EGA87433.1| Srp101p [Saccharomyces cerevisiae VL3]
          Length = 621

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 140/329 (42%), Gaps = 56/329 (17%)

Query: 33  TDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD- 87
             ++ ++ +++     V E+L   LI  ++    A  + +++         +    + + 
Sbjct: 298 KHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENT 357

Query: 88  ----VSELIHKMLMP-----LSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKL 131
               +++ + ++L P     L +      S +       P+V  +VGVNGVGK+T + KL
Sbjct: 358 ARESLTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKL 417

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------------- 175
           +  +     KV++ A DTFRS A++QL++  +  +     S +                 
Sbjct: 418 AFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVEL 477

Query: 176 --------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                        +A +A K ++ +  D++++DTAGR HN+  LM+ +          D 
Sbjct: 478 FEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSF------ADQ 531

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTH 282
             P  ++ V +A  G ++++Q + F+   G        I++K D      G ++ +V   
Sbjct: 532 AKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFIISKCDTVGEMLGTMVNMVYAT 591

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            IP+ F+GVG+   DL     K     + 
Sbjct: 592 GIPILFVGVGQTYTDLRTLSVKWAVNTLM 620


>gi|256271803|gb|EEU06834.1| Srp101p [Saccharomyces cerevisiae JAY291]
          Length = 621

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 140/329 (42%), Gaps = 56/329 (17%)

Query: 33  TDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD- 87
             ++ ++ +++     V E+L   LI  ++    A  + +++         +    + + 
Sbjct: 298 KHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENT 357

Query: 88  ----VSELIHKMLMP-----LSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKL 131
               +++ + ++L P     L +      S +       P+V  +VGVNGVGK+T + KL
Sbjct: 358 ARESLTKALTQILTPGVSVDLLREIQSKRSKKEEEGKCDPYVFSIVGVNGVGKSTNLSKL 417

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------------- 175
           +  +     KV++ A DTFRS A++QL++  +  +     S +                 
Sbjct: 418 AFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVEL 477

Query: 176 --------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                        +A +A K ++ +  D++++DTAGR HN+  LM+ +          D 
Sbjct: 478 FEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSF------ADQ 531

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTH 282
             P  ++ V +A  G ++++Q + F+   G        I++K D      G ++ +V   
Sbjct: 532 AKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFIISKCDTVGEMLGTMVNMVYAT 591

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            IP+ F+GVG+   DL     K     + 
Sbjct: 592 GIPILFVGVGQTYTDLRTLSVKWAVNTLM 620


>gi|323309627|gb|EGA62835.1| Srp101p [Saccharomyces cerevisiae FostersO]
          Length = 621

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 140/329 (42%), Gaps = 56/329 (17%)

Query: 33  TDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD- 87
             ++ ++ +++     V E+L   LI  ++    A  + +++         +    + + 
Sbjct: 298 KHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENT 357

Query: 88  ----VSELIHKMLMP-----LSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKL 131
               +++ + ++L P     L +      S +       P+V  +VGVNGVGK+T + KL
Sbjct: 358 ARESLTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKL 417

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------------- 175
           +  +     KV++ A DTFRS A++QL++  +  +     S +                 
Sbjct: 418 AFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVEL 477

Query: 176 --------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                        +A +A K ++ +  D++++DTAGR HN+  LM+ +          D 
Sbjct: 478 FEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSF------ADQ 531

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTH 282
             P  ++ V +A  G ++++Q + F+   G        I++K D      G ++ +V   
Sbjct: 532 AKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFIISKCDTVGEMLGTMVNMVYAT 591

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            IP+ F+GVG+   DL     K     + 
Sbjct: 592 GIPILFVGVGQTYTDLRTLSVKWAVNTLM 620


>gi|224091775|ref|XP_002309350.1| predicted protein [Populus trichocarpa]
 gi|222855326|gb|EEE92873.1| predicted protein [Populus trichocarpa]
          Length = 624

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 146/332 (43%), Gaps = 38/332 (11%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
            + K  ++   W   + +  A  +   K  +          +   + L+D L+  ++   
Sbjct: 308 KDSKPDAKKKGWFSSMFQSIAGKANLEKADL----------EPALKALKDRLMTKNVAEE 357

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLY-----DVSELIHKMLMP------LSKPFNWDFSHR 110
           +A+K+ E +      K +S    +       + E + ++L P      L          +
Sbjct: 358 IAEKLCESVAASLEGKKLSSFTRISSTVQAAMEEALVRILTPRRSIDILRDVHAATEQRK 417

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+V++ VGVNGVGK+T + K++  +    + VM+AA DTFRS A++QL+  A R      
Sbjct: 418 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIF 477

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 D A +A EA ++A     DV+++DTAGR+ +N  LM  + K+I        + P
Sbjct: 478 EKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLI------YLNNP 531

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIV 279
             VL V +A  G +A+ Q+  F+                G+++TK D    + G  + +V
Sbjct: 532 DLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMV 591

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                PV F+G G+   DL+    K     + 
Sbjct: 592 YISGSPVMFVGCGQSYTDLKKLNVKAIVKTLL 623


>gi|76154974|gb|AAX26359.2| SJCHGC03967 protein [Schistosoma japonicum]
          Length = 235

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 110/240 (45%), Gaps = 16/240 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   LI +D+ + + +++ E +      
Sbjct: 3   LAELGRKITNALRSLGNATIINEDVLNSLLKEICTALIEADVNIRLVKQLRENVRAVIDF 62

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ ++++   V + +  ++ P  K +       P+VI++VG+ G GKTT   KL
Sbjct: 63  DEMAAGLNKRKIIQSAVFKELVHLVDPQVKAWQ-PARGSPNVIMLVGLQGCGKTTTATKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +      G K  +   DTFR+ A DQLK  A +    F  S   +D   +A +  ++   
Sbjct: 122 AYFYQRKGWKTCMICADTFRAGAFDQLKQNATKARIPFYGSYTETDPVVIARDGVQKFVE 181

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
            K +++I+DT+GR      L   + ++   ++      P  V+ VLDA+ GQ    Q   
Sbjct: 182 DKFEIIIVDTSGRHRQEDSLFEEMLQVSNAIE------PDHVIYVLDASIGQACEAQASA 235


>gi|297617159|ref|YP_003702318.1| flagellar biosynthetic protein FlhF [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144996|gb|ADI01753.1| flagellar biosynthetic protein FlhF [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 386

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/311 (23%), Positives = 133/311 (42%), Gaps = 22/311 (7%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + A E L  +R++ +  A  + KL+E    +    R    + +     L+ + +   +A 
Sbjct: 91  EKADELLEELREMKQMMADLNHKLEEK-DKLKGMPRSVQSLYK----ALVNNQVNEKLAF 145

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +I + +  +   ++      +  V   +   +    KP  ++   RP V+ ++G  GVGK
Sbjct: 146 RIAQSVKQRIETEEGHHDEDMMGVCTEVLGSMFKKPKPIEFN-RGRPRVVAMIGPTGVGK 204

Query: 125 TTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALA 182
           TT I KL+   +     +V L   DT+R AA++QLK +A+       V         ALA
Sbjct: 205 TTTIAKLAANFALLERKRVGLVTIDTYRIAAVEQLKTYAEIIGVPLEVVFHPEGLETALA 264

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                  + K  DV+ IDTAGR   N   +  + + +RV +      P  +L VL   T 
Sbjct: 265 -------KHKDKDVIFIDTAGRSPRNEPHINELAEFLRVAE------PDEILLVLSTNTP 311

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301
              L ++     V     L+ TK+D   R G ++ +    K  + ++  G+ + +D+   
Sbjct: 312 TLDLLEIYQRFNVVRIDKLVFTKVDECERFGQILNVAYKTKTGLAYITNGQNVPDDIMVP 371

Query: 302 VAKDFSAVITG 312
                + +I G
Sbjct: 372 DPSYLAKMILG 382


>gi|167630312|ref|YP_001680811.1| GTP-binding signal recognition particle protein, putative
           [Heliobacterium modesticaldum Ice1]
 gi|167593052|gb|ABZ84800.1| GTP-binding signal recognition particle protein, putative
           [Heliobacterium modesticaldum Ice1]
          Length = 434

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 112/265 (42%), Gaps = 19/265 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAK-DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           L  +++  A+A++I+ ++      +   + +RV   V   +  +L      F  D     
Sbjct: 180 LRENEVDEALARQIIRQIFEGNDGQNGWNPERVRRLVLAQLASILGQPRPIFLPDSGKSQ 239

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            V+++VG  GVGKTT I KL+   S     KV L   DT+R AA++QLK + D       
Sbjct: 240 EVVMMVGPTGVGKTTTIAKLAATFSIVNRRKVGLITADTYRIAAVEQLKTFGDIIGVPVD 299

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVD--VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                         A + A  +  D  +L++DTAGR H N   +  +   +         
Sbjct: 300 VVFTPQ--------ALRSAIERHRDKELLLVDTAGRSHKNDSQLEELAAYVE------QS 345

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P   + VL ATT    L Q+    +       + TK+D T   G ++ ++      + +
Sbjct: 346 QPSHSILVLSATTKFKDLLQITEGFSRMNIDRYLFTKLDETNHYGSILNLIHRTGKSLSY 405

Query: 289 LGVGEGI-NDLEPFVAKDFSAVITG 312
           +  G+ + +D+E       S +I G
Sbjct: 406 ITTGQNVPDDMEVADPNKLSNLIYG 430


>gi|222834682|gb|EEE73145.1| predicted protein [Populus trichocarpa]
          Length = 250

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/261 (26%), Positives = 123/261 (47%), Gaps = 24/261 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREEL----EDLLIRSDIGVAVAQKIVEELLTKRYA 76
                  L+  I  I+SS+ +D+ +  EL    +  LIRSD+ V + ++I   L  +   
Sbjct: 2   LDGLKTNLRSAIKKIVSSQGVDEKLIHELALDVQRALIRSDVDVRLVKEIAGRLEERCVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVI 128
           +           ++  + + + K+L   S+     FS +P   + +L++G+ G GK+T+ 
Sbjct: 62  EVPPPGLSRKDHIVKILYDELAKLLGGESE-----FSFKPGRTNKVLMLGIQGSGKSTIT 116

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+K ++  G K  +   DT+R  A+ QL+   +R++ +    E  SDA A+     + 
Sbjct: 117 AKLAKLLTRQGYKTGVVGADTYRPGALVQLRTMCERSNVEVYGEEGESDAPAVVRRGLRH 176

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
                 DV+++DTAGR      L+     M R+ K  +P      L V+D T G     Q
Sbjct: 177 FGDS-CDVILVDTAGRHKEEGELLDE---MKRIGKAAEP---DLALLVIDGTIGNRCYAQ 229

Query: 249 VEMFHAVAGTTGLIMTKMDGT 269
            E FH      G+++TK+D +
Sbjct: 230 AEAFHKTVPVGGIVVTKLDSS 250


>gi|331241410|ref|XP_003333353.1| signal recognition particle receptor subunit alpha [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309312343|gb|EFP88934.1| signal recognition particle receptor subunit alpha [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 691

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 143/334 (42%), Gaps = 71/334 (21%)

Query: 42  DDGVR---EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH----- 93
           ++ V+   E+++  L++ ++   +A +I E +  +   + +S  R    + +LI+     
Sbjct: 364 EEDVKPMIEQIQLQLMKKNVAREIAVRICERIQVELIGQKLSD-RSTTALKKLINHSLEI 422

Query: 94  ---KMLMPLSK--------------------PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              K+L P +                       +   S  P+V+  VGVNGVGK+T + K
Sbjct: 423 SLTKILTPKTSVDILADIHQKQDRQKQMNLSQLSGGTSTAPYVMTFVGVNGVGKSTNLSK 482

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS--------------------ADFV 170
           ++  +    L+V++AA DTFRS A++QL+                            +  
Sbjct: 483 VAFWLLQNRLRVLIAACDTFRSGAVEQLRTHVRNLGKLDGAIEHQSPNSNHEERKMIELF 542

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               G DAA +A EA + A+    DV++IDTAGR+ +N  LM  +GK++ V      + P
Sbjct: 543 EKGYGKDAAGIAKEAIQYAKNDGFDVVLIDTAGRMQDNEPLMRALGKLVVV------NQP 596

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVA------------GTTGLIMTKMDG-TARGGGLIP 277
             +L V +A  G  A+ Q+  F                G  G+I+TK D    + G  + 
Sbjct: 597 DKILFVGEALVGNEAVDQLGKFDKSLKTFSGLDSHLPRGIDGIILTKFDTIDDKVGAALS 656

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +  T   P+ F+G G+   DL+          + 
Sbjct: 657 MTYTINQPILFVGTGQTYTDLKNLKVNHVVNALM 690


>gi|156101509|ref|XP_001616448.1| signal recognition particle receptor [Plasmodium vivax SaI-1]
 gi|148805322|gb|EDL46721.1| signal recognition particle receptor, putative [Plasmodium vivax]
          Length = 602

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 152/310 (49%), Gaps = 35/310 (11%)

Query: 30  EGITDIIS-SRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD-----V 79
           + I  + S + ++++     V + +++ L+  ++ V +   ++E++      K      +
Sbjct: 298 DSILKVFSYNSKIEENDIESVLQGVKNKLLSKNVAVGICDMLIEKMKGNLIGKKKTLFSM 357

Query: 80  SVQRVLYDV-SELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +V++ +  V SE I  +L+P      L          + + I+ +GVNGVGK+T + K+ 
Sbjct: 358 NVKKTVSTVLSETIQSILIPKQSVDVLRAALEAKSIGKLYSIVFLGVNGVGKSTNLAKVC 417

Query: 133 KKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
             +   G LK+M+AA DTFR+ A++QL+  A+           G DAAA+A EA   A+ 
Sbjct: 418 YYLKTKGNLKIMIAACDTFRAGAVEQLRTHANCLDVFLYEKGYGKDAAAIAKEAIAYAKK 477

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +   V++IDTAGR+ +N  LM  +GK+I +      + P  +L V +A  G +A+ Q++ 
Sbjct: 478 ENFHVILIDTAGRMQDNEPLMRSLGKLILI------NNPDFILFVGEALVGNDAIDQLKK 531

Query: 252 FHAVA----------GTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           F+                G+++TK D    + G  + +V     P+ F+G+G+    L+ 
Sbjct: 532 FNQALTDATCNGNKRTIDGILLTKFDTVDDKVGTALSMVYLTGKPIVFVGIGQKYTHLKK 591

Query: 301 FVAKDFSAVI 310
           F        +
Sbjct: 592 FNVSMVVKAL 601


>gi|147768335|emb|CAN66971.1| hypothetical protein VITISV_013670 [Vitis vinifera]
 gi|297743653|emb|CBI36536.3| unnamed protein product [Vitis vinifera]
          Length = 313

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 146/328 (44%), Gaps = 38/328 (11%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           + ++   W   + +  A  +   K  +          +   + L+D L+  ++   +A+K
Sbjct: 1   METKKKGWFSAMFQSIAGKANLEKADL----------EPALKALKDRLMTKNVAEEIAEK 50

Query: 66  IVEELLTKRYAKDVSVQRVLY-----DVSELIHKMLMP------LSKPFNWDFSHRPHVI 114
           + E +      K ++    +       + E + ++L P      L          +P+V+
Sbjct: 51  LCESVAASLEGKKLASFTRVSSTVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVV 110

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + VGVNGVGK+T + K++  +    + VM+AA DTFRS A++QL+  A R          
Sbjct: 111 VFVGVNGVGKSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGY 170

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             D A +A EA ++A     DV+++DTAGR+ +N  LM  + K++ +      + P  VL
Sbjct: 171 EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLVNL------NNPDLVL 224

Query: 235 QVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHK 283
            V +A  G +A+ Q+  F+                G+++TK D    + G  + +V    
Sbjct: 225 FVGEALVGNDAVDQLSKFNQKLADLSTSPKPQLIDGILLTKFDTIDDKVGAALSMVYISG 284

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            PV F+G G+   DL+    K     + 
Sbjct: 285 APVMFVGCGQSYTDLKKLNVKSIVKTLL 312


>gi|255030848|ref|ZP_05302799.1| hypothetical protein LmonL_20161 [Listeria monocytogenes LO28]
          Length = 259

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 6/164 (3%)

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
            AAI QL+    +                +A +A  +A+ + +D +IIDTAGRLH +  L
Sbjct: 1   PAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETL 60

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + ++  +        P  +L V+D+ TGQ+A+   + F+     TG+++TK+DG  R
Sbjct: 61  MDELKQVKEIAT------PTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTR 114

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           GG  + I      P+ F+  GE +  LE F     ++ I G  D
Sbjct: 115 GGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASRILGMGD 158


>gi|284106929|ref|ZP_06386309.1| signal recognition particle-docking protein FtsY [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283830002|gb|EFC34279.1| signal recognition particle-docking protein FtsY [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 194

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/196 (39%), Positives = 114/196 (58%), Gaps = 6/196 (3%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
            R LD  V EE+E  L+ +D+GV  A +++E L           +  + ++   +  +L 
Sbjct: 2   GRGLDPEVLEEVEASLLGADVGVRTADRLLERLRATAGG---DPRESIQELKRAMADILA 58

Query: 98  PL-SKPFNWDFS--HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            + SKP +       +P VIL VGVNGVGKTT + KL+ ++   GL  +L A DTFR+AA
Sbjct: 59  SVESKPIDELVRTGPKPFVILAVGVNGVGKTTSMAKLAGRLRKQGLTPLLVAADTFRAAA 118

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           I+QL++W  R  AD +    G+D +A+ ++    A+A+ VDV++IDTAGRLH    LM  
Sbjct: 119 IEQLEVWGKRIGADVIKHRQGADPSAVVFDGLAAAKARGVDVMLIDTAGRLHTKVNLMDE 178

Query: 215 IGKMIRVLKRLDPHAP 230
           + KM RVL R  P AP
Sbjct: 179 LKKMKRVLDREYPGAP 194


>gi|229258568|gb|ACQ45589.1| cell division protein FtsY [Calyptogena ponderosa endosymbiont]
 gi|229258570|gb|ACQ45590.1| cell division protein FtsY [Vesicomya cordata gill symbiont]
          Length = 194

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 77/180 (42%), Positives = 119/180 (66%), Gaps = 2/180 (1%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + + + K+L+  +   N + +    VILVVGVNG GKTT+IGK++K   + G  VMLAAG
Sbjct: 17  LKDELAKLLVEGN-QLNTNINET-FVILVVGVNGAGKTTLIGKMAKSFQNQGKSVMLAAG 74

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QLK+W  R +   V    G+D A++ ++A + AQAK +D+LI DTAGRLH 
Sbjct: 75  DTFRAAAVEQLKVWGQRNNIPVVAQTTGADTASVIFDACQSAQAKNIDILIADTAGRLHT 134

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + K+ RV+ + + +APH  + V+D  +GQNA+ Q + F+     +G+ +TK+D
Sbjct: 135 QNNLMQELAKIKRVIAKHNANAPHETMLVIDGGSGQNAINQAKEFNKAVTLSGISITKLD 194


>gi|309806528|ref|ZP_07700531.1| Signal peptide binding domain protein [Lactobacillus iners LactinV
           03V1-b]
 gi|308167071|gb|EFO69247.1| Signal peptide binding domain protein [Lactobacillus iners LactinV
           03V1-b]
          Length = 342

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 62/174 (35%), Positives = 86/174 (49%), Gaps = 7/174 (4%)

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           ML AGD +R AAIDQLK      +     SE  +D  A+      QA     D +IIDTA
Sbjct: 1   MLIAGDIYRPAAIDQLKTIGASLNVPVY-SENNTDVVAIVENGLMQADRNHNDYVIIDTA 59

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GRL  +  LM  +  ++ V    +      ++ V DA TGQ A    E F++    TGLI
Sbjct: 60  GRLEIDDQLMDELKNIVDVAHPEN------IILVADAMTGQVAATVAEGFNSKLKLTGLI 113

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
           +TK+DG  RGG  + I     +P+ F G GE + +L+ F     ++ I G  D 
Sbjct: 114 LTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDRMASRILGMGDM 167


>gi|254586281|ref|XP_002498708.1| ZYRO0G16720p [Zygosaccharomyces rouxii]
 gi|238941602|emb|CAR29775.1| ZYRO0G16720p [Zygosaccharomyces rouxii]
          Length = 605

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 142/348 (40%), Gaps = 60/348 (17%)

Query: 18  TKGFASTSLKLKEGI----TDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEE 69
            + + S   K           ++ ++ + +     V ++L+  LI  ++    A+ + ++
Sbjct: 263 KESYQSNEDKGTSAFGFLRKHLLGNKTITETDLKSVLDKLKQKLITKNVAPEAAEFLCKQ 322

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPF----------------NWDFSHRPH 112
           +         +    + +   E + K L  +  P                 +     +P+
Sbjct: 323 VSLDLVGSKTASWTSVENTARESLTKSLTQILTPGVSVDLLHEIQQKAETRDAQGLKQPY 382

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT------- 165
           V  VVGVNGVGK+T + KL+  +    L+V++ A DTFRS A++QL++  +         
Sbjct: 383 VFSVVGVNGVGKSTNLSKLAFWLLQNNLRVLVVASDTFRSGAVEQLRVHVENLAELTDES 442

Query: 166 ---------------SADFVCSEI--GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                            +   +          +A +A K A+ ++ D++++DTAGR HN+
Sbjct: 443 HIRGSKNRRDKTGNDHVELFEAGYGGSDLVTKIAKQAIKYAKEQEFDIVLMDTAGRRHND 502

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMT 264
             LM+ +       K      P  ++ V +A  G ++++Q + F+   G        I++
Sbjct: 503 PTLMSPLKSFAEQAK------PDKIIMVGEALVGTDSVQQAKNFNEAFGRVRNLDFFIIS 556

Query: 265 KMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K D      G ++ +V    IP+ F+GVG+   DL          ++ 
Sbjct: 557 KCDTVGEMLGTMVNMVYATGIPILFVGVGQTYTDLRVLSVNWAVNILV 604


>gi|269792923|ref|YP_003317827.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100558|gb|ACZ19545.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 402

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 118/262 (45%), Gaps = 30/262 (11%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-KMLMPLSKPFNWDFSHRP 111
           L+ +D+   VAQ+I            +S +R   D+ EL+  ++ +  S P +     R 
Sbjct: 162 LVEADVDPEVAQRI------------LSSRRGGEDLLELLSSRVRVMGSDPVSAMGGRR- 208

Query: 112 HVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
             ++ VG  GVGKTT I KL+       G KV LA  DT+R AA++QL+ +A        
Sbjct: 209 --VMFVGPTGVGKTTTIAKLAAVHSLWEGRKVALATADTYRIAAVEQLRTYAKILGIPME 266

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 D   L       ++ +  D++++DTAGR   ++  M  +  +       D   P
Sbjct: 267 VVFEAKDFEGLV------SKHQGCDLIMLDTAGRSSRDAKKMEELKWLY------DAFQP 314

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            +V  VL A      + +V    AV     +I TK+D T   G L+ ++    +PV F  
Sbjct: 315 DAVHLVLAANLKYKDMLKVIDRMAVVPIGSVIFTKLDETYSFGPLLNVLEDFNLPVSFFT 374

Query: 291 VGEGIN-DLEPFVAKDFSAVIT 311
           VG+ +  D+E   ++  + +I 
Sbjct: 375 VGQNVPNDIEVAKSERLARLIL 396


>gi|94270962|ref|ZP_01291863.1| GTP-binding signal recognition particle SRP54, G-domain:Signal
           peptide binding (SRP54) M-domain [delta proteobacterium
           MLMS-1]
 gi|93450606|gb|EAT01727.1| GTP-binding signal recognition particle SRP54, G-domain:Signal
           peptide binding (SRP54) M-domain [delta proteobacterium
           MLMS-1]
          Length = 313

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 6/161 (3%)

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           IDQL + A+        S    D   +  +A  +A     D L+IDTAGRLH +  LM  
Sbjct: 1   IDQLTVLAESLQVPVYPSRSDQDPVTICRQALHRADEAGCDTLLIDTAGRLHVDETLMDE 60

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           +G++   L+         +L V DA TGQ+A+   E FH     +G+I+TK+DG ARGG 
Sbjct: 61  LGRLKEALQPA------EILLVADAMTGQDAVTVAEKFHQDLDLSGVILTKLDGDARGGA 114

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            + I      P+ F+G+GEG++ LEPF     ++ I G  D
Sbjct: 115 ALSIRRATGRPLKFVGLGEGLDALEPFHPDRMASRILGKGD 155


>gi|229258572|gb|ACQ45591.1| cell division protein FtsY [Vesicomya sp. mt-III symbiont]
          Length = 194

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 78/180 (43%), Positives = 119/180 (66%), Gaps = 2/180 (1%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + + + K+L+      N + +    VILVVGVNG GKTT+IGK++K   + G  VMLAAG
Sbjct: 17  LKDELAKLLVE-DNQLNTNINET-FVILVVGVNGAGKTTLIGKIAKSFQNQGKSVMLAAG 74

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QLK+W  R +   V    G+DAA++ ++A + AQAK +D+LI DTAGRLH 
Sbjct: 75  DTFRAAAVEQLKVWGQRNNTPVVAQTTGTDAASVIFDACQSAQAKNIDILIADTAGRLHT 134

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + K+ RV+ + + +APH  + V+D  +GQNA+ Q + F+     +G+ +TK+D
Sbjct: 135 QNNLMQELAKIKRVIAKQNANAPHETMLVIDGGSGQNAINQAKEFNKAVTLSGISITKLD 194


>gi|225375344|ref|ZP_03752565.1| hypothetical protein ROSEINA2194_00969 [Roseburia inulinivorans DSM
           16841]
 gi|225212833|gb|EEG95187.1| hypothetical protein ROSEINA2194_00969 [Roseburia inulinivorans DSM
           16841]
          Length = 420

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 82/306 (26%), Positives = 135/306 (44%), Gaps = 35/306 (11%)

Query: 30  EGITDIISSRRLDDGVRE------------ELED-----LLIRSDIGVAVAQKIVEELLT 72
           E +++I+  +  +DG RE             LE+     +L R+ +   V +K V ++L 
Sbjct: 125 ENLSNILEKKLSEDGAREAEMPVTPKASPKNLENFKFMKMLYRTMLNNDVNEKYVNQILD 184

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKL 131
           +      S   V   +S +  KM++ L +P   D S  +PHVI  VG  GVGKTT I K+
Sbjct: 185 EAEKVTNSGSNVDIILSNVYQKMILKLGEPNCIDLSGKKPHVIFFVGPTGVGKTTTIAKI 244

Query: 132 SKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADF---VCSEIGSDAAALAYEAFK 187
           + K       KV +   DT+R AA +QLKI+A+   A       +E  + +     E   
Sbjct: 245 AAKYKVEHDKKVAMLTADTYRIAAAEQLKIYANILDAPVKIIYSAEELNQSLETLAE--- 301

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                  D++ +DTAG  H N         + +++  LD      V  VL ATT    L 
Sbjct: 302 ------YDLVFVDTAGFSHKNEEQRE---DIKKLVNGLDLKYEKEVYLVLSATTKYKDLM 352

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306
           ++   +       +I TK+D T   G ++ I +     + ++  G+ + +DLE F  +  
Sbjct: 353 EIVDIYREIAEYKIIFTKLDETTSFGNILNIRLYSGADLSYMTNGQSVPDDLEVFNTQMV 412

Query: 307 SAVITG 312
              + G
Sbjct: 413 VKQLLG 418


>gi|229258566|gb|ACQ45588.1| cell division protein FtsY [Vesicomya sp. endosymbiont]
          Length = 194

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 82/195 (42%), Positives = 121/195 (62%), Gaps = 3/195 (1%)

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              K +     LY  +   + K+L+     FN + +    VILVVGVNG GKTT+IGK++
Sbjct: 2   ASRKTLKDAERLYQFLKNELAKLLVE-DNQFNTNINET-FVILVVGVNGAGKTTLIGKMA 59

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K   + G  VMLAAGDTFR+AAI+QLK+W  R     V    G+DA ++ ++A++ AQAK
Sbjct: 60  KSFQNQGKSVMLAAGDTFRAAAIEQLKVWGQRNDIPVVAQTTGADATSVIFDAYQSAQAK 119

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +D+LI DTAGRLH  + LM  + K+ RV+ + + +APH  + V+D   GQNA+ Q + F
Sbjct: 120 NIDILIADTAGRLHTQNNLMQELAKIKRVISKQNANAPHETMLVIDGGLGQNAINQAKEF 179

Query: 253 HAVAGTTGLIMTKMD 267
           +     +G+ +TK+D
Sbjct: 180 NKAVALSGISITKLD 194


>gi|219670143|ref|YP_002460578.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540403|gb|ACL22142.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 412

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 119/270 (44%), Gaps = 16/270 (5%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           DLL    I   + ++I+  +      +D      +    +   + +   +         +
Sbjct: 157 DLLKERGINPKLIKRILRSVQQNVREEDWGEDHRVRACLKETIRRICSNTAAIQPGV-RK 215

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P ++ +VG  GVGKTT IGKL+   S     +V L   DT+R AA++QLK + +      
Sbjct: 216 PRIVALVGPTGVGKTTTIGKLAAGFSIVDKRRVALITADTYRVAAVEQLKTFGEIIGVPV 275

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 S       EA ++ + K  +++ IDTAGR  ++ + M+    +   L++  P  
Sbjct: 276 DVVMTPSGLR----EAIQRHEDK--ELIFIDTAGRSPHHDLHMSE---LKAFLEKAQPE- 325

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
               + V+ A T    L ++        TT LI TK+D T  GG ++ ++    +PV ++
Sbjct: 326 --LTMLVMSAATQAADLARIYERFEPL-TTHLIFTKLDETMGGGTILNLLERTDLPVAYI 382

Query: 290 GVGEGI-NDLEPFVAKDFSAVITGCLDYGE 318
             G+ + +D+E    +  +  I G  D  E
Sbjct: 383 TNGQNVPDDIEVATPERLTRYILGEGDRRE 412


>gi|269860608|ref|XP_002650024.1| signal recognition particle receptor alpha subunit [Enterocytozoon
           bieneusi H348]
 gi|220066575|gb|EED44052.1| signal recognition particle receptor alpha subunit [Enterocytozoon
           bieneusi H348]
          Length = 405

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 82/315 (26%), Positives = 147/315 (46%), Gaps = 28/315 (8%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK---RY 75
               + S  L      + + +     ++ ++ D  IR +I +  A  + + ++ +     
Sbjct: 96  SKIRNVSQTLFYKSFSLFTGKIHFKELKAKIIDHFIRMNIEIKYANILYDNIIQEFLDDK 155

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLS------KPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            + ++          ++ K+L  L+      K    +   +P V   VGVNGVGK+T + 
Sbjct: 156 TQWINENDFRSKSKIVLSKLLPSLNHVNLINKIKETNKEGKPFVFCFVGVNGVGKSTSVA 215

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-----TSADFVCSEIGSDAAALAYE 184
           K++K + +  L V +AA DTFR+ AI+QLK + D+      +  F  S    D A +A  
Sbjct: 216 KMTKWLLEHKLSVFIAACDTFRAGAIEQLKTYVDQFITSGYNVGFYKSGYNKDDAIVAKT 275

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A  +A     DV++IDTAGR+HNN +LM+ + K+IR+      + P  ++ V +A TG +
Sbjct: 276 AIAKAHENNYDVVLIDTAGRMHNNGMLMSSLSKIIRM------NTPDHIVYVGEALTGND 329

Query: 245 ALRQVEMFHAVAG-------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +L  VE F+              +I+TK+D    + G +  +    + P+ FLG G+  +
Sbjct: 330 SLNFVEEFNKYISNAQSGRIIDSIILTKIDTVDKKLGQIFNLTFKAQAPILFLGCGQTNS 389

Query: 297 DLEPFVAKDFSAVIT 311
           DL          ++ 
Sbjct: 390 DLIEVDPDKILDLLL 404


>gi|89895719|ref|YP_519206.1| hypothetical protein DSY2973 [Desulfitobacterium hafniense Y51]
 gi|89335167|dbj|BAE84762.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 412

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 119/270 (44%), Gaps = 16/270 (5%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           DLL    I   + ++I+  +      +D      +    +   + +   +         +
Sbjct: 157 DLLKERGINPKLIKRILRSVQQNVREEDWGEDHRVRACLKETIRRICSNTAAIQPGV-RK 215

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           P ++ +VG  GVGKTT IGKL+   S     +V L   DT+R AA++QLK + +      
Sbjct: 216 PRIVALVGPTGVGKTTTIGKLAAGFSIVDKRRVALITADTYRVAAVEQLKTFGEIIGVPV 275

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 S       EA ++ + K  +++ IDTAGR  ++ + M+    +   L++  P  
Sbjct: 276 DVVMTPSGLR----EAIQRHEDK--ELIFIDTAGRSPHHDLHMSE---LKAFLEKAQPE- 325

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
               + V+ A T    L ++        TT LI TK+D T  GG ++ ++    +PV ++
Sbjct: 326 --LTMLVMSAATQAADLARIYERFEPL-TTHLIFTKLDETIGGGTILNLLERTDLPVAYI 382

Query: 290 GVGEGI-NDLEPFVAKDFSAVITGCLDYGE 318
             G+ + +D+E    +  +  I G  D  E
Sbjct: 383 TNGQNVPDDIEVATPERLTRYILGEGDRRE 412


>gi|238916769|ref|YP_002930286.1| flagellar biosynthesis protein FlhF [Eubacterium eligens ATCC
           27750]
 gi|238872129|gb|ACR71839.1| flagellar biosynthesis protein FlhF [Eubacterium eligens ATCC
           27750]
          Length = 432

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 12/262 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           +I +++    A +I+ ++      K+ ++  +L  V +   K+++ L  P       +P 
Sbjct: 178 MIGNEVDTKYADEIISDI-EASLKKESNIDSILAAVYQ---KIILKLGTPKTISLGDKPK 233

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           VIL +G  GVGKTT I K++         KV     DT+R AA+DQL  +A         
Sbjct: 234 VILFIGPTGVGKTTTIAKIASHFKLEKETKVAFITSDTYRIAAVDQLNTYASIIDCPVNV 293

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +    +      E       K  +++++DTAGR H +   M  +  +I ++         
Sbjct: 294 AYSADEIGECLDE------FKDYELILVDTAGRSHKSEEQMEELDNLIEMIASRADEFDL 347

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            +   L  TT    L  +   +       LI TK+D T   G ++ + +    P+ +   
Sbjct: 348 EIYLTLSVTTKYKDLVNIADKYRHIENWALIFTKLDETCYLGNMLNMKLYTGAPLSYTTS 407

Query: 292 GEGIN-DLEPFVAKDFSAVITG 312
           G+ +  D+E    +  + ++ G
Sbjct: 408 GQNVPNDIEVINEQRLAKLLLG 429


>gi|229258558|gb|ACQ45584.1| cell division protein FtsY [Ectenagena extenta gill symbiont]
          Length = 194

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/195 (41%), Positives = 122/195 (62%), Gaps = 3/195 (1%)

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              K +     LY  + + + K+ +  +   N   ++   VILVVGVNG GKTT+IGKL+
Sbjct: 2   ASRKTLKNAESLYQFLKDELAKLFIE-NNQLNIS-TNETFVILVVGVNGAGKTTLIGKLA 59

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K   + G  VMLAAGDTFR+AAI+QLKIW  R +   V   +G+D A++ ++A++ AQAK
Sbjct: 60  KYFQNQGKSVMLAAGDTFRAAAIEQLKIWGQRNNIPVVAKTLGADTASVIFDAYQSAQAK 119

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +D+L+ DTAGRLH    LM  + K+ RV+ + + +APH  + V+D  +GQN + Q + F
Sbjct: 120 NIDILLADTAGRLHTQKNLMQELSKIKRVITKQNINAPHETMLVIDGGSGQNIINQAKEF 179

Query: 253 HAVAGTTGLIMTKMD 267
           +     +G+ +TK+D
Sbjct: 180 NKAVNLSGISITKLD 194


>gi|213404072|ref|XP_002172808.1| signal recognition particle receptor subunit alpha
           [Schizosaccharomyces japonicus yFS275]
 gi|212000855|gb|EEB06515.1| signal recognition particle receptor subunit alpha
           [Schizosaccharomyces japonicus yFS275]
          Length = 527

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/307 (24%), Positives = 136/307 (44%), Gaps = 38/307 (12%)

Query: 22  ASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDI---GVAVAQKIVEELLTKR 74
             TS +     +++I  + L +     V  +++  LI  ++   G   A +    +    
Sbjct: 241 EETSSRGFSFFSNLIGQKTLTEKDLKPVLAKMQQHLIEKNVAQLGGPTALRFTSFI---A 297

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             ++      L +  +++ K               RP+ I ++GVNGVGK+T + +L+  
Sbjct: 298 RGQEDRTSLDLLNNVQMVRK------------KEARPYTISLIGVNGVGKSTTLSRLAYW 345

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT------SADFVCSEIGSDAAALAYEAFKQ 188
           +    L++++AA DTFRS AI+QL +           + +      G DA+ +   A + 
Sbjct: 346 LLSNKLRILVAACDTFRSGAIEQLNVHVTNLKKVHGDNIELFAQGYGKDASIVVKNAVQY 405

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           A     DV+++DTAGR HN+  LM  + K  +  K         + QV +A  G ++L Q
Sbjct: 406 ASQNNFDVILVDTAGRRHNDQRLMGSLEKFTKATK------LDKIFQVAEALVGTDSLAQ 459

Query: 249 VEMFHAVA---GTTGLIMTKMDGTARG-GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            + F A        G I++K+D      G ++ +V T  +P+ F+GVG+  +DL      
Sbjct: 460 AKHFQASLYHRRLDGFIISKVDAVGELVGVMVGMVYTTHVPIVFVGVGQTYSDLRTLSVD 519

Query: 305 DFSAVIT 311
                + 
Sbjct: 520 WVVDQLM 526


>gi|85706771|ref|ZP_01037863.1| signal recognition particle protein [Roseovarius sp. 217]
 gi|85668829|gb|EAQ23698.1| signal recognition particle protein [Roseovarius sp. 217]
          Length = 367

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           +A+ DT R AA++QL I   +   D +    G D   +A  A  QA     DV ++DTAG
Sbjct: 1   MASLDTNRPAAMEQLAILGKQIGVDTLPIVKGEDPVQIAKRAKTQAALGGYDVYMLDTAG 60

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           RLH ++ L+A    +       D   P   L V+D  TGQ+A+     F    G TG+++
Sbjct: 61  RLHIDAELIAQAAAV------RDVANPRETLLVVDGLTGQDAVNVATEFDDKIGVTGVVL 114

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           T+MDG  RGG  + +      P+ F+G+GE ++ LE F  +  +  I G  D
Sbjct: 115 TRMDGDGRGGAALSMRAVTGKPIRFVGLGEKMDALETFEPERIAGRILGMGD 166


>gi|125973007|ref|YP_001036917.1| GTP-binding signal recognition particle [Clostridium thermocellum
           ATCC 27405]
 gi|256004804|ref|ZP_05429779.1| GTP-binding signal recognition particle SRP54 G- domain
           [Clostridium thermocellum DSM 2360]
 gi|281417218|ref|ZP_06248238.1| flagellar biosynthetic protein FlhF [Clostridium thermocellum JW20]
 gi|125713232|gb|ABN51724.1| GTP-binding signal recognition particle SRP54, G-domain
           [Clostridium thermocellum ATCC 27405]
 gi|255991254|gb|EEU01361.1| GTP-binding signal recognition particle SRP54 G- domain
           [Clostridium thermocellum DSM 2360]
 gi|281408620|gb|EFB38878.1| flagellar biosynthetic protein FlhF [Clostridium thermocellum JW20]
 gi|316940757|gb|ADU74791.1| flagellar biosynthetic protein FlhF [Clostridium thermocellum DSM
           1313]
          Length = 403

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 133/303 (43%), Gaps = 21/303 (6%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDG-----VREELEDLLIRSDIGVAVAQKIVEELL 71
           + +       ++++    +I++   D+      V +   + L+++++   + ++++  + 
Sbjct: 112 MEEKINKIYEQIQKPSEKLIAATNDDNEQPQSKVLDLFYNNLLKNEVDTEIVKQLISVVR 171

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            K   ++VSV      +  LI +M+   S         +P V+++VG  GVGKTT + K+
Sbjct: 172 GKVK-ENVSVSETASILYNLISEMMGKPSD-IKLRNDGKPTVVMLVGPTGVGKTTTLAKI 229

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +   S      V L   DT+R AA++QLK +AD            ++      +A K+  
Sbjct: 230 AANYSLNLNKNVGLITADTYRIAAVEQLKTYADILGMPLKVIYSANE----IQDAIKEYS 285

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  D+++IDTAGR + N      +  ++ V           +  VL  TTG    R++ 
Sbjct: 286 DK--DLILIDTAGRSYKNKEHFDELKTLVEVTNA------DEIYLVLSTTTGMRNCREII 337

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAV 309
             ++      LI TK+D ++  G ++         + F+  G+ + +D+E       +  
Sbjct: 338 EHYSFLENYKLIFTKLDESSALGLILNSRRLTNRDLSFVTTGQSVPDDIELANVDMITKN 397

Query: 310 ITG 312
           + G
Sbjct: 398 LLG 400


>gi|302419337|ref|XP_003007499.1| signal recognition particle receptor subunit alpha [Verticillium
           albo-atrum VaMs.102]
 gi|261353150|gb|EEY15578.1| signal recognition particle receptor subunit alpha [Verticillium
           albo-atrum VaMs.102]
          Length = 636

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 86/327 (26%), Positives = 142/327 (43%), Gaps = 42/327 (12%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTK--- 73
             S+   +     +++  + L         + +E+ L++ ++    A ++ E +  +   
Sbjct: 313 LGSSLNTITGLFRNVVGGKTLTQDDLNKAMKGMEEHLLKKNVAREAAVRLCEGVEKELLG 372

Query: 74  -RYAKDVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDF-SHRPHVILVVG 118
            +     S+   +    E  + KML P            +++P      S RP+V+ +VG
Sbjct: 373 VKTGNFESINTRIQSAMEASLTKMLTPTSSLDLLREIDAITRPSAVSLRSARPYVMSIVG 432

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---------SADF 169
           VNGVGK+T + K+   +     +V++AAGDTFRS A++QL +                + 
Sbjct: 433 VNGVGKSTNLSKICFFLLQNKYRVLIAAGDTFRSGAVEQLAVHVRNLTELTAREGGKVEL 492

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                G DAA +A +A   A A+  DV++IDTAGR HN+  LM+ + K     K      
Sbjct: 493 YQKGYGKDAAQVARDAVAHAAAEGFDVVLIDTAGRRHNDQRLMSSLEKFANFAK------ 546

Query: 230 PHSVLQV----LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG-GGLIPIVVTHKI 284
           P  +L V    L  T           F A  G  G I++K D      G L+ +V    +
Sbjct: 547 PDKILMVGEPSLAPTRSPRPATSTPPFGAARGLDGFIISKCDTVGTMVGTLVSLVHATNV 606

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVIT 311
           PV F+GVG+  +DL  F  K     + 
Sbjct: 607 PVLFVGVGQHYSDLRNFSVKWAVEKLL 633


>gi|71005446|ref|XP_757389.1| hypothetical protein UM01242.1 [Ustilago maydis 521]
 gi|46096616|gb|EAK81849.1| hypothetical protein UM01242.1 [Ustilago maydis 521]
          Length = 705

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/318 (24%), Positives = 127/318 (39%), Gaps = 64/318 (20%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLS------ 100
            L   ++   VAQ++ + +      K++         V   + E I ++L P S      
Sbjct: 392 HLQSKNVAADVAQRLCDSVERNLVGKNLGSFGSVKVEVKKALEEAITRILTPKSSTDILL 451

Query: 101 ---------------------KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
                                K         P+ I  VGVNGVGK+T + K+   +    
Sbjct: 452 EIATKRQRITAASSLALATSAKDKELASKPDPYSICFVGVNGVGKSTNLAKVCFWLLQNR 511

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTS---------------ADFVCSEIGSDAAALAYE 184
           L+V++AA DTFR+ A++QL++                      +      G DAA +A +
Sbjct: 512 LRVLIAACDTFRAGAVEQLRVHVRNLGQLRVDGVALEEQKGHIELYERGYGKDAAGIAKD 571

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A   A+A+  DV++IDTAGR+ +N  LM  + K++ V      + P  ++ V +A  G  
Sbjct: 572 ALSYAKAEGFDVVLIDTAGRMQDNEPLMRALAKLVSV------NRPDKIIFVGEALVGNE 625

Query: 245 ALRQVEMFH----------AVAGTTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGE 293
           A+ Q+  F              G  G ++TK D    + G  +       +P+YFLG G+
Sbjct: 626 AVDQITKFDGAMKDFSGVSNPRGLDGSLLTKWDTVDDKVGTALTTTSATGLPIYFLGTGQ 685

Query: 294 GINDLEPFVAKDFSAVIT 311
              DL           + 
Sbjct: 686 TYTDLRQLRVHHVVNALL 703


>gi|229258564|gb|ACQ45587.1| cell division protein FtsY [Vesicomya sp. endosymbiont]
          Length = 194

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/195 (41%), Positives = 122/195 (62%), Gaps = 3/195 (1%)

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              K +     LY  +   + K+L+      N + +    VILVVGVNG GKTT+IGKL+
Sbjct: 2   ASRKTLKDAESLYQFLKGELGKLLIE-DNQLNTNINET-FVILVVGVNGAGKTTLIGKLA 59

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K   + G  VMLAAGDTFR+AA++QLK+W +R     +    G+DAA++ ++A++ AQAK
Sbjct: 60  KSFQNQGKSVMLAAGDTFRAAAVEQLKVWGERNQIPVIAQTTGADAASVIFDAYQSAQAK 119

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +D+LI DTAGRLH    LM  + K+ RV+ + + +APH  + ++D  +GQNA+ Q + F
Sbjct: 120 NIDILIADTAGRLHTQDNLMQELAKIKRVIAKQNANAPHETMLIIDGGSGQNAINQAKEF 179

Query: 253 HAVAGTTGLIMTKMD 267
           +     +G+ +TK+D
Sbjct: 180 NKAVTLSGISITKLD 194


>gi|229258554|gb|ACQ45582.1| cell division protein FtsY [Calyptogena kilmeri gill symbiont]
          Length = 194

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/195 (41%), Positives = 121/195 (62%), Gaps = 3/195 (1%)

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              K +     LY  + + + K+ +  +   N   +    VILVVGVNG GKTT+IGKL+
Sbjct: 2   ASRKTLKNAESLYQFLKDELAKLFIE-NNQLNISINET-FVILVVGVNGAGKTTLIGKLA 59

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K   + G  VMLAAGDTFR+AAI+QLKIW  R +   V   +G+D A++ ++A++ AQAK
Sbjct: 60  KSFQNQGKSVMLAAGDTFRAAAIEQLKIWGQRNNIPVVAKTLGADTASVIFDAYQSAQAK 119

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +D+L+ DTAGRLH    LM  + K+ RV+ + + +APH  + V+D  +GQN + Q + F
Sbjct: 120 NIDILLADTAGRLHTQDNLMQELAKIKRVINKQNINAPHETMLVIDGGSGQNVINQAKEF 179

Query: 253 HAVAGTTGLIMTKMD 267
           +     +G+ +TK+D
Sbjct: 180 NKAVNLSGISITKLD 194


>gi|229258562|gb|ACQ45586.1| cell division protein FtsY [Vesicomya sp. mt-II symbiont]
          Length = 194

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 81/195 (41%), Positives = 123/195 (63%), Gaps = 3/195 (1%)

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              K +     LY  + + + K+L+      N + +    VILVVGVNG GKTT+IGKL+
Sbjct: 2   ASRKTLKDAESLYQFLKDELGKLLIE-DNQLNTNINET-FVILVVGVNGAGKTTLIGKLA 59

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K   + G  VMLAAGDTFR+AA++QLK+W +R     +    G+DAA++ ++A++ AQAK
Sbjct: 60  KSFQNQGKSVMLAAGDTFRAAAVEQLKVWGERNQIPVIAQTTGADAASVIFDAYQSAQAK 119

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +D+LI DTAGRLH    LM  + K+ RV+ + + +APH  + ++D  +GQNA+ Q E F
Sbjct: 120 NIDILIADTAGRLHTQDNLMQELTKIKRVIAKQNANAPHETMLIIDGGSGQNAINQAEEF 179

Query: 253 HAVAGTTGLIMTKMD 267
           +     +G+ +TK+D
Sbjct: 180 NKAVTLSGISITKLD 194


>gi|295399829|ref|ZP_06809810.1| flagellar biosynthetic protein FlhF [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111659|ref|YP_003989975.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y4.1MC1]
 gi|294978232|gb|EFG53829.1| flagellar biosynthetic protein FlhF [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216760|gb|ADP75364.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y4.1MC1]
          Length = 376

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 132/315 (41%), Gaps = 26/315 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             ++  +E L  +++L       S  ++ G +          G   E+  LL   ++   
Sbjct: 80  KKREEDAELLQELKELKTMLKQLSTNVRAGFSHY-------PGPLNEVHHLLANQEVSAP 132

Query: 62  VAQKIVEELLTKRY--AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + Q+I+ +LL + Y    + + ++V     E+I + L PL  PF    S +   I VVG 
Sbjct: 133 LVQEIMADLLDRWYTSGGNATEKQVFAWAKEIIKEKLSPL--PFG-GISFQKKYINVVGP 189

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
            GVGKTT + K++        K +     DT+R AAIDQLK +A   +          D 
Sbjct: 190 TGVGKTTTLAKIAAHCVLHHRKNIAFITTDTYRIAAIDQLKTYAKILNVPLEVCYNLQDF 249

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                    + +    DV++IDTAGR   +   +  +  +I      D         V  
Sbjct: 250 HE------AKKKLSDRDVVLIDTAGRNFRHPQYVKDLQSII------DFDEEMETFLVFA 297

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
            T   + ++ +    ++      I TK+D T R G ++ +++ +K+   +L  G+ + +D
Sbjct: 298 LTAKYDDMKAIYEQFSLIPIDRFIFTKLDETTRYGAMLNLMMEYKVGASYLTNGQNVPDD 357

Query: 298 LEPFVAKDFSAVITG 312
           +     +    ++ G
Sbjct: 358 MMEASVEHIINMLFG 372


>gi|238759639|ref|ZP_04620800.1| Cell division protein ftsY [Yersinia aldovae ATCC 35236]
 gi|238702182|gb|EEP94738.1| Cell division protein ftsY [Yersinia aldovae ATCC 35236]
          Length = 372

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/182 (35%), Positives = 104/182 (57%), Gaps = 2/182 (1%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   + S +++DD + EELE+ L+ +D+GV
Sbjct: 190 VAQEQERPTKEGFFARLKRSLIKTKQNLGSGFMGLFSGKKIDDDLFEELEEQLLIADVGV 249

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
              +KI+  L      K +     LY  + E + ++L  + KP +    + P VIL+VGV
Sbjct: 250 ETTRKIITSLTEHASRKQLKDAEALYGKLKEEMSEILSKVDKPLDVSGKN-PFVILMVGV 308

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NGVGKTT IGKL+++    G  VMLAAGDTFR+AA++QL++W DR     V    G+D+A
Sbjct: 309 NGVGKTTTIGKLARQFQAEGKSVMLAAGDTFRAAAVEQLQVWGDRNKIAVVAQHTGADSA 368

Query: 180 AL 181
           ++
Sbjct: 369 SV 370


>gi|196247618|ref|ZP_03146320.1| GTP-binding signal recognition particle SRP54 G- domain
           [Geobacillus sp. G11MC16]
 gi|196212402|gb|EDY07159.1| GTP-binding signal recognition particle SRP54 G- domain
           [Geobacillus sp. G11MC16]
          Length = 371

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 19/269 (7%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRY--AKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           E+E  L+R  +  +  +++++ LL + Y    + S   V     E++  ML  L  PF  
Sbjct: 114 EVERRLVRQGMSESYVREVMDRLLERWYTDKGERSAAVVSEWAKEVVRDMLSSL--PFAE 171

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
               + +VIL+ G  GVGKTT + K++ +   + G KV     DT+R AAIDQLK +A  
Sbjct: 172 AARQKKYVILL-GPTGVGKTTTLAKMAGRAVLEQGKKVGFITTDTYRIAAIDQLKTYAHI 230

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
             A F          A  + A K+  A   D++ +DTAGR   N   +A + + I     
Sbjct: 231 LHAPF-----AVCYNADDFRAAKRNLAD-CDLVFVDTAGRNFRNPQYVAELQQTIEF--- 281

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
               +    L VL AT   + ++ V    +      LI+TK+D T   G +  +++  ++
Sbjct: 282 ---DSETETLLVLAATGKYDDMKAVYDRFSGLPLDRLIITKLDETDSYGAVFNLLLDSRL 338

Query: 285 PVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
              +   G+ + +D+    A     ++ G
Sbjct: 339 GAAYFTNGQNVPDDMMKASADRLVQLLFG 367


>gi|239826633|ref|YP_002949257.1| flagellar biosynthesis regulator FlhF [Geobacillus sp. WCH70]
 gi|239806926|gb|ACS23991.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Geobacillus sp. WCH70]
          Length = 372

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 130/315 (41%), Gaps = 26/315 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             Q   +E L  +++L       S  +  G +              E+   L+R +I   
Sbjct: 76  KKQNKDAELLHELKELKTMLKQLSTNVTTGFSHY-------PKPLREVHYRLVRQEISAP 128

Query: 62  VAQKIVEELLTK--RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +AQ+I+ +LL K  +     + ++V     E++ + L PL  PF    S +   I VVG 
Sbjct: 129 LAQEIMADLLEKWYKSGGKAAEKQVFAWAKEIVKEKLSPL--PFG-GISFQKKYINVVGP 185

Query: 120 NGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
            GVGKTT + K++ +   + G  +     DT+R AAIDQLK +A+  +          D 
Sbjct: 186 TGVGKTTTLAKIAARCVLEHGKNIAFITTDTYRIAAIDQLKTYANILNVPLEVCYNLQDF 245

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                    + +    DV+ IDTAGR   +      +  +  +   +D +       V  
Sbjct: 246 HE------AKKKLSDRDVVFIDTAGRNFRH------LQYVKDLRNMIDFNEEMETFLVFA 293

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
            T     ++ +    ++      I TK+D T   G +  +++ +K+   +L  G+ + +D
Sbjct: 294 LTAKYEDMKTIYEQFSLIPIDRFIFTKLDETTHYGAMFNLMMEYKVGAAYLTNGQNVPDD 353

Query: 298 LEPFVAKDFSAVITG 312
           +     +    ++ G
Sbjct: 354 MMEASVEQMMNMLFG 368


>gi|229258574|gb|ACQ45592.1| cell division protein FtsY [Vesicomya sp. mt-II symbiont]
          Length = 194

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/180 (42%), Positives = 119/180 (66%), Gaps = 2/180 (1%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + + + K+L+      N + +    VILVVGVNG GKTT+IGK++K   + G  VMLAAG
Sbjct: 17  LKDELAKLLLE-DNQLNTNINET-FVILVVGVNGAGKTTLIGKMAKSFQNQGKSVMLAAG 74

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QL++W  R +   V    G+DAA++ ++A++ AQAK +D+LI DTAGRLH 
Sbjct: 75  DTFRAAAVEQLRVWGQRNNTPVVAQTTGTDAASVIFDAYQSAQAKNIDILIADTAGRLHT 134

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + K+ RV+ + + +APH  + V+D  +GQN + Q + F+     +G+ +TK+D
Sbjct: 135 QNNLMQELAKIKRVIAKQNENAPHETMLVIDGGSGQNVINQAKEFNKAVTLSGISITKLD 194


>gi|238924149|ref|YP_002937665.1| GTP-binding signal recognition particle SRP54, G-domain protein
           [Eubacterium rectale ATCC 33656]
 gi|238875824|gb|ACR75531.1| GTP-binding signal recognition particle SRP54, G-domain protein
           [Eubacterium rectale ATCC 33656]
 gi|291529023|emb|CBK94609.1| flagellar biosynthetic protein FlhF [Eubacterium rectale M104/1]
          Length = 414

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 65/267 (24%), Positives = 117/267 (43%), Gaps = 16/267 (5%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L+ +++      +I++E+  K      S+  +L +V +   K+++   +P     +
Sbjct: 158 LYKTLLDNEVDEKYINQILDEI-EKFLRPGNSLDVILSNVYQ---KLILRFGQPETIKVN 213

Query: 109 -HRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
             +P V+  VG  GVGKTT I K++ K        +     DT+R AA DQL+ +A+   
Sbjct: 214 GKKPRVVFFVGPTGVGKTTTIAKIASKFKVNYNKNIAFITADTYRIAATDQLRTFANILD 273

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                    ++  +        A+ ++ DV+ +DTAG  H N      +  ++     L 
Sbjct: 274 TPLSVIYTATELNSAV------AEYEQADVIFVDTAGFSHKNETQRNDMRALLA---GLS 324

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P    SV  VL ATT    L  +   +       LI TK+D T+  G L+ I +     +
Sbjct: 325 PEYEKSVYLVLSATTKYRDLISIIDSYKDIDDYKLIFTKLDETSSYGNLLNIKLYSDAGI 384

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITG 312
            ++  G+ + +D+E F  +     + G
Sbjct: 385 SYVTNGQNVPDDIEVFDTQKIVKQLLG 411


>gi|229258576|gb|ACQ45593.1| cell division protein FtsY [Vesicomya sp. mt-I symbiont]
          Length = 194

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/180 (43%), Positives = 119/180 (66%), Gaps = 2/180 (1%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + + + K+L+  +   N + +    VILVVGVNG GKTT+IGK++K   + G  VMLAAG
Sbjct: 17  LKDELAKLLVE-NNQLNTNINET-FVILVVGVNGTGKTTLIGKMAKSFQNQGKSVMLAAG 74

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+AA++QLK+W  R     V    G+DAA++ ++A++ AQAK +DVLI DTAGRLH 
Sbjct: 75  DTFRAAAVEQLKVWGQRNKTPVVAQTTGTDAASVIFDAYQSAQAKNIDVLIADTAGRLHT 134

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            + LM  + K+ RV+ + + +APH  + V+D  +GQN + Q + F+     +G+ +TK+D
Sbjct: 135 QNNLMQELAKIKRVIAKQNANAPHETMLVIDGGSGQNVINQAKEFNKAITLSGISITKLD 194


>gi|218513601|ref|ZP_03510441.1| signal recognition particle GTP-binding protein [Rhizobium etli
           8C-3]
          Length = 250

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 6/160 (3%)

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+    + S D +    G     +A  A + A+    DV+I+DTAGR H +  LM  +
Sbjct: 1   EQLRQLGAQASIDTLPVISGQSPTDIAARAVQAAKLGGHDVVILDTAGRTHIDEPLMVEM 60

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             + +         PH +L V D+ TGQ+A+     F    G TGL++T+MDG  RGG  
Sbjct: 61  ADIKKRSN------PHEILLVADSLTGQDAVNLARNFDERVGITGLVLTRMDGDGRGGAA 114

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           + +      P+  +GVGE +++LE F  +  +  I G  D
Sbjct: 115 LSMRAVTGKPIKLIGVGEKMSELEEFHPRRIADRILGMGD 154


>gi|291524882|emb|CBK90469.1| flagellar biosynthetic protein FlhF [Eubacterium rectale DSM 17629]
          Length = 414

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 65/267 (24%), Positives = 117/267 (43%), Gaps = 16/267 (5%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L+ +++      +I++E+  K      S+  +L +V +   K+++   +P     +
Sbjct: 158 LYKTLLDNEVDEKYINQILDEI-EKFIRPGNSLDVILSNVYQ---KLILRFGQPETIKVN 213

Query: 109 -HRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTS 166
             +P V+  VG  GVGKTT I K++ K        +     DT+R AA DQL+ +A+   
Sbjct: 214 GKKPRVVFFVGPTGVGKTTTIAKIASKFKVNYNKNIAFITADTYRIAATDQLRTFANILD 273

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                    ++  +        A+ ++ DV+ +DTAG  H N      +  ++     L 
Sbjct: 274 TPLSVIYTATELNSAV------AEYEQADVIFVDTAGFSHKNETQRNDMRALLA---GLS 324

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           P    SV  VL ATT    L  +   +       LI TK+D T+  G L+ I +     +
Sbjct: 325 PEYEKSVYLVLSATTKYRDLISIIDSYKDIDDYKLIFTKLDETSSYGNLLNIKLYSDAGI 384

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITG 312
            ++  G+ + +D+E F  +     + G
Sbjct: 385 SYVTNGQNVPDDIEVFDTQKIVKQLLG 411


>gi|225181590|ref|ZP_03735031.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Dethiobacter alkaliphilus AHT 1]
 gi|225167698|gb|EEG76508.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Dethiobacter alkaliphilus AHT 1]
          Length = 361

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 21/263 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRP 111
           LI +D+  A+AQ+I+ E+     A++     V+   + + + + L         D     
Sbjct: 112 LIDNDVDPALAQQILTEIHEDFAAENALSDEVVELILQKKVREHLR------TADVPDTS 165

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            V+  VG  GVGKTT + KL+ + +     +V +   D++R  A++QL+ +AD T     
Sbjct: 166 RVLTFVGPTGVGKTTTLAKLAARFALYHNKQVGMITIDSYRIGAVEQLRTYADITGMPI- 224

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                        +A ++   +  +++++DTAGR   NS+ ++ +   +  L        
Sbjct: 225 ---EVVMTPKDMTQALERLADR--EIILVDTAGRNAKNSMQVSELAVFMEALPAP----- 274

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                VL ATT    L+Q+    +      LI TK+D T   G L+ +  T  +P+ +L 
Sbjct: 275 -ETFLVLSATTKTRDLQQIIAKFSKVNFNRLIFTKLDETETFGALLNVANTSNLPITYLT 333

Query: 291 VGEGI-NDLEPFVAKDFSAVITG 312
            G+ + +D+E   A   + +I G
Sbjct: 334 TGQNVPDDIENATADKLAKLILG 356


>gi|291000150|ref|XP_002682642.1| predicted protein [Naegleria gruberi]
 gi|284096270|gb|EFC49898.1| predicted protein [Naegleria gruberi]
          Length = 319

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 83/238 (34%), Positives = 127/238 (53%), Gaps = 29/238 (12%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG--LKVMLAAGDTFRSAAIDQLKI 160
              +   RP V+ + GVNG GKTT IGKL  K  ++G    +++AA DT R+AA DQL+ 
Sbjct: 65  IPLNPKSRPTVVQICGVNGSGKTTTIGKLLHKYRESGTVRNIVVAAADTVRAAAPDQLRT 124

Query: 161 WADRTS----ADFVCSE----------------------IGSDAAALAYEAFKQA-QAKK 193
           W +RTS     D   SE                          A ++ YEA +QA + + 
Sbjct: 125 WVERTSGCTLVDLTESEKLKKQHTTTPQQVKVKNIRQVSYKVPAESVVYEAIQQALRKED 184

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           VD++ +DTAGRL N    M  +  +  +  +    AP     +LD T GQN+++Q ++F 
Sbjct: 185 VDLVFVDTAGRLQNQEASMKELSLITEMCSKSRKGAPDHTWLILDGTIGQNSIQQAKLFQ 244

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                +G+I+TK+DG+A+GG ++ I    KIPV ++G+GE ++DL+PF  + F   I 
Sbjct: 245 KYVRISGIIVTKLDGSAKGGVILAIANELKIPVLYIGLGESVSDLKPFYPEQFVDSIL 302


>gi|23099031|ref|NP_692497.1| flagellar biosynthesis regulator FlhF [Oceanobacillus iheyensis
           HTE831]
 gi|22777259|dbj|BAC13532.1| flagella-associated protein [Oceanobacillus iheyensis HTE831]
          Length = 372

 Score =  161 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 69/270 (25%), Positives = 128/270 (47%), Gaps = 23/270 (8%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           + LI  +I   +A+++++E+      +D   +++ +L +V +LI   L  +   F +D  
Sbjct: 119 EHLIAQEISPTIAEQLIKEVRDDETNQDEYHNLESILINVKQLIVNRLEQVDIGFTYDHR 178

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
               +I  VG  GVGKTT I K++ K   +   KV     DT+R AA+DQLK +A     
Sbjct: 179 ----IIQFVGPTGVGKTTTIAKIAAKLYLEEKKKVAFITLDTYRIAAVDQLKTYAKILHI 234

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +    D       A ++  +   DV+++DTAGR + ++  +  I +    LK    
Sbjct: 235 PVEVAYSKEDYRK----AVEKFSS--FDVILVDTAGRNYRDNQYLNEIQEWPSSLK---- 284

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
               +   VL  T+    +  +     + G  G++ TK+D T + G L+ I   +KI + 
Sbjct: 285 ---VTNYLVLSMTSKPKDMLDIFQRFQLLGIHGVVFTKLDETEQYGNLLNISWNNKIRIG 341

Query: 288 FLGVGEGIND--LEPFVAKDFSAVITGCLD 315
           ++  G+ + +  ++P  A++ S +I    D
Sbjct: 342 YMTNGQDVPEDVIQP-SAEEISHLILSDND 370


>gi|317051540|ref|YP_004112656.1| flagellar biosynthetic protein FlhF [Desulfurispirillum indicum S5]
 gi|316946624|gb|ADU66100.1| flagellar biosynthetic protein FlhF [Desulfurispirillum indicum S5]
          Length = 464

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 129/288 (44%), Gaps = 23/288 (7%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           +   + L+D     L   L+R+ +   +  K+V+ L  K  + D   + V+ +  +L+ +
Sbjct: 197 VFEEKPLND-----LYTKLLRAGVDRYICHKMVDALKAKLGSVD-DTELVMRNARQLVSR 250

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSA 153
           + +P+      D  H P ++ ++G  GVGKTT I K++   +   G+ V L   DT+R A
Sbjct: 251 I-VPMGDGIEVDGIH-PKIVALIGPTGVGKTTTIAKIAADHLLRQGVSVGLITLDTYRIA 308

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A++QLK +A+                          +    D++++DTAGR H ++  + 
Sbjct: 309 AVEQLKTYANIIKIPVEVVNQNESLL------LALRKNLDKDLVLVDTAGRSHRDTQQIE 362

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            + + +R  K         V  VL A+T +  L  +       G    I+TK+D ++  G
Sbjct: 363 DLMRFLREEKIK-----VEVHIVLSASTKEADLNDIMQSFEKVGIDRAIITKLDESSSFG 417

Query: 274 GLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLDYGEEK 320
           G+   +    +PV +   G+ +  DL P     F  ++TG     EEK
Sbjct: 418 GVFNCLAKRGLPVSYFANGQDVPNDLIPASNHAFFELLTGT--PAEEK 463


>gi|309359570|emb|CAP32620.2| hypothetical protein CBG_13942 [Caenorhabditis briggsae AF16]
          Length = 608

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 129/313 (41%), Gaps = 60/313 (19%)

Query: 32  ITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQ 82
           +  ++  ++L       + E++ D LI  ++    A+KI + +++K   K V     + Q
Sbjct: 322 LKGLVGEKKLSSEDLTPLVEKMRDNLIMKNVAAEPAEKICQSVVSKLEGKVVNNFSRTAQ 381

Query: 83  RVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            V   V E + ++L P      L          RP+VI+  GVNGVGK+T + K++  ++
Sbjct: 382 EVRTAVRESLVQLLTPKHRVDILRDVIEAKKEGRPYVIVFCGVNGVGKSTNLAKITFWLT 441

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTS------ADFVCSEIGSDAAALAYEAFKQAQ 190
           +   +V++AAGDTFR+ A++QL+      +              G DAA LA  A K A 
Sbjct: 442 ENKHRVLIAAGDTFRAGAVEQLRTHTRHLNALHPQSVHLYEQGYGKDAAGLAAAAIKIAA 501

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  DV                     +IRV      + P  VL V +A  G  A+ Q+ 
Sbjct: 502 ERDFDV---------------------LIRV------NEPDLVLFVGEALVGNEAVDQLV 534

Query: 251 MFHAVAG-----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            F+                 G+++TK D    + G  + +      P+ F+G G+   DL
Sbjct: 535 KFNEALANHAAPGQKPRLIDGIVLTKFDTIDDKVGAAVSMTYITGQPIVFVGCGQTYADL 594

Query: 299 EPFVAKDFSAVIT 311
                      + 
Sbjct: 595 RNLNVGAVVNSLL 607


>gi|229258556|gb|ACQ45583.1| cell division protein FtsY [Vesicomya gigas gill symbiont]
          Length = 194

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/195 (40%), Positives = 121/195 (62%), Gaps = 3/195 (1%)

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              K +     LY  + + + K+ +  +   N   +    VILVVGVNG GKTT+IGKL+
Sbjct: 2   ASRKTLKNAESLYKFLKDELAKLFIE-NNQLNISINET-FVILVVGVNGAGKTTLIGKLA 59

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K   + G  VMLAAGDTFR+AAI+QLKIW  R +   +   +G+D A++ ++A++ AQAK
Sbjct: 60  KSFQNQGKSVMLAAGDTFRAAAIEQLKIWGQRNNIPVIAKTLGADTASVIFDAYQSAQAK 119

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +D+L+ DTAGRLH    LM  + K+ RV+ + + +APH  + V+D  +GQN + Q + F
Sbjct: 120 NIDILLADTAGRLHTQDNLMQELTKIKRVITKQNINAPHETMLVIDGGSGQNVINQAKEF 179

Query: 253 HAVAGTTGLIMTKMD 267
           +     +G+ +TK+D
Sbjct: 180 NKAVNLSGISITKLD 194


>gi|153953793|ref|YP_001394558.1| flagellar biosynthesis regulator FlhF [Clostridium kluyveri DSM
           555]
 gi|219854409|ref|YP_002471531.1| hypothetical protein CKR_1066 [Clostridium kluyveri NBRC 12016]
 gi|146346674|gb|EDK33210.1| FlhF [Clostridium kluyveri DSM 555]
 gi|219568133|dbj|BAH06117.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 397

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/269 (24%), Positives = 124/269 (46%), Gaps = 26/269 (9%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           R +L+  L  SD   +V +KI+  +     A D   +  +  + E++  M+   +K    
Sbjct: 148 RSKLQIRLENSDFSHSVVKKILNSI----NAMDDDREEEVK-LKEVVKSMIKVDNKELE- 201

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
                 HV+++VG  GVGKTT I KL+ K+      KV L   DT+R  A++QL+ +AD 
Sbjct: 202 ------HVVVLVGPTGVGKTTTIAKLAGKLVLIEKKKVGLITIDTYRIGAVEQLRTYADI 255

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            +  F          ++   A      K  D+++IDT GR   N + ++ +   I     
Sbjct: 256 MNIPF------QVIFSMKDMAKAIDNMKSCDIILIDTTGRSSKNEMQISELRAFI----- 304

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            D     +V  V+  TT    +  +   +     + +I+TK+D T+  G ++ I+   K 
Sbjct: 305 -DKVQTSNVHLVISCTTKNKDIDVIVNGYKKLNYSDIIITKLDETSTYGSILNILQLAKK 363

Query: 285 PVYFLGVGEGIN-DLEPFVAKDFSAVITG 312
           P+ F+  G+ +  D++    ++ + ++ G
Sbjct: 364 PISFVTTGQNVPEDIKIMEPEELAKLVLG 392


>gi|260438785|ref|ZP_05792601.1| flagellar biosynthesis protein FlhF [Butyrivibrio crossotus DSM
           2876]
 gi|292808774|gb|EFF67979.1| flagellar biosynthesis protein FlhF [Butyrivibrio crossotus DSM
           2876]
          Length = 415

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 108/262 (41%), Gaps = 12/262 (4%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L+ +++    A  I+ ++      +      +   ++ +  K+++ L +P   +   R  
Sbjct: 162 LMENEMDEKYANAIINDINASLKKE----SNIDSILAAVYQKIILKLGEPDGIETDERKK 217

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +I  +G  GVGKTT I KL+     + G  V +   DT+R AA++QL  +A         
Sbjct: 218 IIFFIGPTGVGKTTTIAKLASDFKLNKGKSVAMVTADTYRIAAVEQLNTYAGILDVPVSV 277

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +   S+      E          DV+ +DTAGR H N      + ++I  +K     A  
Sbjct: 278 AYSPSEICGCLNE------FSGYDVIFVDTAGRSHKNEEQKDELIELINNVKNGGYDADI 331

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
               VL  TT    L  +   +       L+ TK+D T   G +I +      P+ +   
Sbjct: 332 ETFLVLSVTTKYKDLINIADTYKEIDDYRLLFTKLDETVTLGNIINLKCYTGAPLSYTTS 391

Query: 292 GEGI-NDLEPFVAKDFSAVITG 312
           G+ + +D+E    +  +  + G
Sbjct: 392 GQNVPDDIETIDVQKLAKNLLG 413


>gi|311030110|ref|ZP_07708200.1| flagellar biosynthesis regulator FlhF [Bacillus sp. m3-13]
          Length = 381

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/322 (24%), Positives = 138/322 (42%), Gaps = 23/322 (7%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDD---GVREELEDLLIRSDI 58
           S QK++S + S I +       + L++K+ +  +   ++ D         LE+ L++S+I
Sbjct: 78  SKQKISSPAASRIEQ--DKLFDSILEMKKMMKSLTQEKQRDPLLPDFFFHLEEKLLQSEI 135

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
                ++++E +  K         + L  + E   ++L  L +      S++   I +VG
Sbjct: 136 SSLHVEELMETIYEKWLENKTMTDKSLLKLLE--TEVLQSLGEVSFDQDSYKKKFICLVG 193

Query: 119 VNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
             GVGKTT + KL+   S   G  +     DT+R AAI+QLK +A    A         D
Sbjct: 194 PTGVGKTTTLAKLAADASLKKGKSIGFITTDTYRIAAIEQLKTYASILDAPIEVCYSAED 253

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            +A       + +   +DV+ IDTAGR   N   +  + ++      LD     +   VL
Sbjct: 254 FSA------AKNKLSHLDVVFIDTAGRNFLNERFVEELKEV------LDFKEEMTTFLVL 301

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
             T+  + ++++       G    I TK D T   G +  I  T++    F+  G+ +  
Sbjct: 302 SLTSKMSDMKKITDQFWNVGIHQFIFTKKDETTSIGSMYEISRTYQKSAAFVTDGQNVPE 361

Query: 297 DLEPFVAKDFSAVITGCLDYGE 318
           DL PF  +     I    + GE
Sbjct: 362 DLIPFTKELMVRTI--MEEIGE 381


>gi|302874607|ref|YP_003843240.1| flagellar biosynthetic protein FlhF [Clostridium cellulovorans
           743B]
 gi|307690782|ref|ZP_07633228.1| flagellar biosynthesis regulator FlhF [Clostridium cellulovorans
           743B]
 gi|302577464|gb|ADL51476.1| flagellar biosynthetic protein FlhF [Clostridium cellulovorans
           743B]
          Length = 410

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 135/298 (45%), Gaps = 33/298 (11%)

Query: 28  LKEGITDIISSRRLD--DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
           +K+ I  +I+    +      +E+ +LL  +D+     ++++E L ++  ++DV  +  +
Sbjct: 141 MKDLINSLITKENAEMPKEKSDEVTELLEDNDVD----KRVIEFLSSQ-ISEDVPSEERV 195

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVML 144
             +  ++   +    K           V+++VG  GVGKTT I KL+ + S     KV L
Sbjct: 196 SALRGVLKNNIEIFEK-------TPNKVVILVGPTGVGKTTTIAKLAGRYSLMEKKKVGL 248

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
              DT+R  A++QLK +++  +  F           +A + F        D+++IDT GR
Sbjct: 249 ITLDTYRIGAVEQLKTYSEIMNIPFKVI-FNMSDMEIAIKEFDY-----CDIILIDTTGR 302

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
              N++ ++ +         L   A  ++  VL +TT    +  +   +       +I+T
Sbjct: 303 SSKNAMQISELRAY------LHKVATDNIYLVLSSTTKNKDIEAIIEGYRPLNYNAVIIT 356

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLDYGEEKI 321
           K+D T+  G +I I+   + P+ F+  G+ +  D+      +   +I G     EEKI
Sbjct: 357 KLDETSTYGSVINILQDSQKPLGFITTGQSVPEDIRVPNKDELVKLILG-----EEKI 409


>gi|188586040|ref|YP_001917585.1| GTP-binding signal recognition particle SRP54 G- domain
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350727|gb|ACB84997.1| GTP-binding signal recognition particle SRP54 G- domain
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 466

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 132/305 (43%), Gaps = 19/305 (6%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSR---RLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           + +L      T   ++  + ++  S    +L + V +   DLL+  D+   +AQ+++ + 
Sbjct: 171 LEELKNELNQTKDMMQTMMKEVRQSSFRDKLPEHVNKY-YDLLLEHDVIDQLAQELISQT 229

Query: 71  LTKRYAKDVSV-QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           + +   + +   Q  + ++  +I K L     P     +  P +I ++G  GVGKTT + 
Sbjct: 230 MKEMDFRGLEDEQAFVRELKTIIGKKLSEQVTPLKDKNTTGPRIISMIGPTGVGKTTTVA 289

Query: 130 KLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+ + +     +V L   DT+R AA++QLK + D  S          +           
Sbjct: 290 KLAARHTLMENAEVGLITIDTYRIAAVEQLKTYGDILSLPVEVVMTPQELKD------AM 343

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + K  D++IIDTAGR H N + M  +   I   +      PH    VL   T    L+ 
Sbjct: 344 HKLKDKDLIIIDTAGRSHKNEMQMKELKGFIETCE------PHINHLVLSLGTKYKDLKN 397

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFS 307
           +   +       LI+TK D T   G L+ ++   +    ++  G+ + +DLE F  +   
Sbjct: 398 IIAKYNHINFNSLILTKTDETDNLGNLLNLLWEFQTGCSYVTTGQNVPDDLEEFSLEKLL 457

Query: 308 AVITG 312
             I G
Sbjct: 458 DKILG 462


>gi|302670741|ref|YP_003830701.1| flagellar biosynthesis protein FlhF [Butyrivibrio proteoclasticus
           B316]
 gi|302395214|gb|ADL34119.1| flagellar biosynthesis protein FlhF [Butyrivibrio proteoclasticus
           B316]
          Length = 422

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 116/281 (41%), Gaps = 15/281 (5%)

Query: 37  SSRRLDDGVREELE---DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH 93
           S   + D     ++   + LI +++      ++ +E+  K     +     L +V + + 
Sbjct: 149 SGSDISDETMSFIKLLYNTLIENEVDEIYVNQLTDEV-EKISKPGMPFDFALANVYQKMV 207

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRS 152
                       +    P   + +G  GVGKTT I KL+ ++S     KV L   DT+R 
Sbjct: 208 LKFGKSEPIEPIEQGQGPRAEIFIGPTGVGKTTTIAKLASELSVTQKKKVALVTVDTYRI 267

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           AA +QL+ +A      F       +   +A +       K  D +++DTAG   +N  L 
Sbjct: 268 AAAEQLRTYASILEIPFRVIYSVDEMKQVAED------FKDYDYIMVDTAGHSQHNDELK 321

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
           + I   IR L+ L          VL ATT    L ++   ++      LI TKMD T   
Sbjct: 322 SDIEAYIRTLEDLM---DCENYLVLSATTKYRDLIEIADSYSELVAYKLIFTKMDETGAK 378

Query: 273 GGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           G +  + +    PV ++  G+ + +D+  F A+     + G
Sbjct: 379 GNVYNMRMHTGAPVAYITNGQNVPDDIAVFDAQRIVKNLLG 419


>gi|114566405|ref|YP_753559.1| hypothetical protein Swol_0870 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337340|gb|ABI68188.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 395

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 110/263 (41%), Gaps = 14/263 (5%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           + LI + +   +A KI+  + ++        +  + D+     +  +   KP       +
Sbjct: 139 ETLINNQVEKELALKIINRVESRLPKDSKGDELWVRDLCLHTIQEYIDDIKPIELQRDKK 198

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
             ++ +VG  GVGKTT I KL+  MS   G +V L   DT+R +A  QL+ +AD      
Sbjct: 199 GALVFMVGPTGVGKTTTIAKLAANMSFLEGKEVALITLDTYRVSAAQQLRTFADIIGIPI 258

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D      EA KQ Q K  D++ +DTAGR       M  +   I          
Sbjct: 259 SVVFNPQDLG----EAIKQYQKK--DIIFVDTAGRSPYKDEHMGELQDFIEAAN------ 306

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   + VL  TT    L  +     + G   +I TK+D +   G ++  +   + P+ +L
Sbjct: 307 PDETILVLSVTTDSRDLINIYQQFNLIGVDKIIFTKLDESCNYGRILNTIYHIRKPIAYL 366

Query: 290 GVGEGI-NDLEPFVAKDFSAVIT 311
             G+ + +D+E     + +  + 
Sbjct: 367 TTGQNVPDDIEVPDTLELARTLL 389


>gi|28211315|ref|NP_782259.1| flagellar biosynthesis regulator FlhF [Clostridium tetani E88]
 gi|28203755|gb|AAO36196.1| flagellar biosynthesis protein flhF [Clostridium tetani E88]
          Length = 377

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/302 (21%), Positives = 131/302 (43%), Gaps = 29/302 (9%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVRE--ELEDLLIRSDIGVAVAQKIVEELLT 72
           +++ K            + +      +++  +E  E++ +L  +DI   + +KI++EL  
Sbjct: 96  KRILKEIEEMKNAFTSFVDN-TYKGNIEEERQEIKEIKSILKDNDISEDIIEKILDELNE 154

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
                       + +++E + K    +              +++VG  GVGKTT I KL+
Sbjct: 155 ------------VENITEALEKTKEFIEDRVRVSSEDLKGAVVLVGPTGVGKTTTIAKLA 202

Query: 133 KKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            ++S     KV L   DT+R  A++QLK +AD     F        +     +A +  + 
Sbjct: 203 GRLSLVEKKKVGLITVDTYRIGAVEQLKTYADIMKIPFKV----VFSIKDMEDAIEDMK- 257

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              +V+++DT GR   N + ++ +   I  +   +      +  V+ +TT    +  +  
Sbjct: 258 -NCEVILVDTTGRSSKNVMQISELRAFIEKVNSEN------IHLVISSTTKNKDIDSIVE 310

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVI 310
            +   G   +I+TK+D T   G ++ I  + K P+ F+  G+ +  D+     K+ + +I
Sbjct: 311 GYKTLGYKSVIITKLDETTTYGSILNIANSTKKPISFITTGQNVPEDIRLVTPKEITGLI 370

Query: 311 TG 312
            G
Sbjct: 371 LG 372


>gi|124365569|gb|ABN09803.1| GTP-binding signal recognition particle SRP54, G-domain [Medicago
           truncatula]
          Length = 314

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 120/305 (39%), Gaps = 36/305 (11%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           G A    ++  G   + +   +D  +R+          +   + +  ++ ++  +  +D+
Sbjct: 2   GLADLGGRILRGFDKMSNETVIDKEIRKRC--------VN-EITRAFIQSIIEPKLIRDM 52

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             +     +  +I+  L      F+        V      +  GKTT   + +      G
Sbjct: 53  HAK-----IKNIIYNHLN--LDDFDAARKMIQQV-----PSCCGKTTTCAQFANHYQKKG 100

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
           LK  L   DT R+ A DQLK     T+                 E   Q Q    D++I+
Sbjct: 101 LKTGLVCTDTLRNGAFDQLKQIYAETNIPCYG---RVGYCQNCRERCGQMQGGNCDLIIV 157

Query: 200 D-TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA-----LRQVEMFH 253
           D + G       L+  I ++ +  K      P  V+ V+D   GQ+A     L+Q   F 
Sbjct: 158 DVSGGHKQEEDALIEEIHQVSKATK------PDLVILVIDGNIGQHAFDHRSLKQATAFT 211

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                  +I++KMDG A GGG +  V   K  V F+G GE +++ E F  K F + + G 
Sbjct: 212 QSVDIGAVIVSKMDGYAMGGGSLSAVAATKSSVIFIGTGEHMDEFEVFEVKPFVSSLLGM 271

Query: 314 LDYGE 318
            D+ E
Sbjct: 272 DDWYE 276


>gi|255523686|ref|ZP_05390652.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Clostridium carboxidivorans P7]
 gi|296186690|ref|ZP_06855092.1| flagellar biosynthesis protein FlhF [Clostridium carboxidivorans
           P7]
 gi|255512555|gb|EET88829.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Clostridium carboxidivorans P7]
 gi|296048727|gb|EFG88159.1| flagellar biosynthesis protein FlhF [Clostridium carboxidivorans
           P7]
          Length = 397

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 141/322 (43%), Gaps = 36/322 (11%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--------EELEDL 52
           ++NQ+     + +           + +L   + ++ +   LD+ V+         +++  
Sbjct: 98  LNNQQRKRTEVIFDENYKSMLEKNNEQLVNEVKEMRNM--LDEMVKGSNITIGKSKVQLY 155

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L + D+   V + I+ E+  K    DV  +  +  V E I  +L    +  +        
Sbjct: 156 LEKMDVEDKVVKYIMNEM--KMIPDDVPNKEKIKKVMEQI--ILTKPMEEND-------- 203

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           ++++VG  GVGKTT I KL+ KM+   G KV L   DT+R  A++QLK +AD  +  F  
Sbjct: 204 IVVLVGPTGVGKTTTIAKLAGKMALLEGKKVGLITIDTYRIGAVEQLKTYADIMNIPFKV 263

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                +  A              DV+++DT GR   N++ ++ +   I  +         
Sbjct: 264 VLTIKEMEAAVE------SMSNCDVILVDTTGRSSKNTMQISELRAFIEKVN------TD 311

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
           +V  V+  TT    +  +   +     + +I+TK+D T+  G ++ I    K P+ F+  
Sbjct: 312 NVNLVMSCTTKNRDIGVILEGYKPLNYSNIIITKLDETSTYGSILNICEGSKKPISFVTT 371

Query: 292 GEGINDLEPF-VAKDFSAVITG 312
           G+ + D   F  +K+ + ++ G
Sbjct: 372 GQNVPDDIKFMTSKEITNLVLG 393


>gi|308798719|ref|XP_003074139.1| SRP54_SYNY3 Signal recognition particle protein (ISS) [Ostreococcus
           tauri]
 gi|116000311|emb|CAL49991.1| SRP54_SYNY3 Signal recognition particle protein (ISS) [Ostreococcus
           tauri]
          Length = 426

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 18/244 (7%)

Query: 74  RYAKDVSV-QRVLYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  K V   Q ++  V++ + +++  + ++   +     P VIL+ G+ GVGKTT  GKL
Sbjct: 2   KVTKGVEPGQMLVKAVADELCELMGGVGAEGIKFRDDGEPTVILMAGLQGVGKTTACGKL 61

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           S  M   G  V+L A D +R AAIDQLK    +         + +    +A    ++A+ 
Sbjct: 62  SLAMRKQGKTVLLVATDVYRPAAIDQLKTLGTQIGVPVFDMGVDASPPEVAARGVRKAKE 121

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           + +DV+I+DTAGRL+ +  LM+ +       K          L V+DA TGQ A      
Sbjct: 122 EDIDVVIVDTAGRLNIDEKLMSELKDTKLATKA------DETLLVVDAMTGQEAANLTAS 175

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G                  + +  + +    F      ++ LEPF  +  ++ I 
Sbjct: 176 FQRGDGRRTRRGG---------AALSVARSFRKAHQF-TASVKMDALEPFYPERMTSRIL 225

Query: 312 GCLD 315
           G  D
Sbjct: 226 GMGD 229


>gi|258592483|emb|CBE68792.1| putative Flagellar biosynthesis protein flhF (Flagella-associated
           GTP-binding protein) [NC10 bacterium 'Dutch sediment']
          Length = 388

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 124/307 (40%), Gaps = 21/307 (6%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELED---LLIRSDIGVAVAQKIVEELLTKRYA 76
                  ++K  ++ +     L   + + L      L+  ++   VA++ V  +  +   
Sbjct: 97  ALQRELEQVKGMVSGLYGRGHLPPDLPQSLGRIYWALLSQEVEEGVARRWVVSVRDRLRE 156

Query: 77  KDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                   +  + +E++ + ++ L  P   +      V+ +VG  GVGKTT I KL+   
Sbjct: 157 AASPDSTPVSALLAEVLAREIVGLPVPKAGNGRR---VVALVGPTGVGKTTTIAKLAAGC 213

Query: 136 SD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               G +V L   DT+R A   QLK +A+     +  +       A    A   A  +  
Sbjct: 214 RFREGKRVALITTDTYRIAGAQQLKNYAELIGLPYCVAP----LPADLKRAL--AGDRDA 267

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV+ IDT GR       +  +               + V  VL ATT +  L Q    + 
Sbjct: 268 DVIFIDTVGRSARRKDQLEELATY------AGSDDGYEVHLVLSATTKRADLLQAVEAYR 321

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGC 313
             G + +I TK+D TA  G +    +T  +P+ +L  G+ + +D+E       +  + G 
Sbjct: 322 PLGFSSIIATKLDETATVGPVCEAALTAAVPISYLTTGQEVPDDIEEAQPLRLAWRLVGE 381

Query: 314 LDYGEEK 320
            + G+E+
Sbjct: 382 SEGGKER 388


>gi|300854224|ref|YP_003779208.1| flagellar biosynthesis protein FlhF [Clostridium ljungdahlii DSM
           13528]
 gi|300434339|gb|ADK14106.1| flagellar biosynthesis protein FlhF [Clostridium ljungdahlii DSM
           13528]
          Length = 397

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 110/259 (42%), Gaps = 26/259 (10%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           SD    V   I+           V++        E + +++  + K  +       ++++
Sbjct: 158 SDFNSKVVNTILNR---------VNIIEDDRAEEEKLKEVVTSMIKVEDKVLE---NIVV 205

Query: 116 VVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +VG  GVGKTT I KL+ K+S     KV L   DT+R  A++QLK +AD  +  F     
Sbjct: 206 LVGPTGVGKTTTIAKLAGKLSLIEKKKVGLITIDTYRIGAVEQLKTYADIMNIPF----- 260

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
                 +             DV++IDT GR   N + ++ +   I      D     ++ 
Sbjct: 261 -QVVFTIKDMGKAIENMSDCDVILIDTTGRSSKNKMQISELRAFI------DKVNTDNIH 313

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+  TT    +  +   +       +I+TK+D T+  G ++ I+   K P+ F+  G+ 
Sbjct: 314 LVISCTTKNRDIDVIVEGYKELNYNNVIITKLDETSTYGSILNILQAAKKPISFVTTGQN 373

Query: 295 IN-DLEPFVAKDFSAVITG 312
           +  D++    ++   ++ G
Sbjct: 374 VPEDIKVMNTEELVKLVLG 392


>gi|288573008|ref|ZP_06391365.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568749|gb|EFC90306.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 447

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/319 (23%), Positives = 131/319 (41%), Gaps = 33/319 (10%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +++     S + +L +  AS S    E   +   +    D  RE    +L+  D+     
Sbjct: 158 ERIQRTLSSVLERLDR--ASVSDGGTEKPPEPRLAPSSMDDCRERWRHMLLEIDM----T 211

Query: 64  QKIVEELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +  V+ LL +      D+S +  L +       +  P     +     R   ++ +G  G
Sbjct: 212 ESFVDALLERYRGSLDDLSFKDWLKE------SIRAPFRDVISALGGSR---VMFIGPTG 262

Query: 122 VGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKTT I KL+         KV+LA  DT+R AA++QL+ +A              D   
Sbjct: 263 VGKTTTIAKLAAANSLWEDRKVLLATADTYRIAAVEQLRTYAKILGVPVEVIFDPQDLKG 322

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +        + + V+++++DTAGR   +S  +    ++          AP SV  V+ A+
Sbjct: 323 I-------REKRDVELILLDTAGRSQRDSRRLDEAKELYEA------FAPESVHLVISAS 369

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLE 299
           +    +  V         + LI TK+D T   G ++ I +   IP+ FL VG+ +  D+E
Sbjct: 370 SKYRDMLDVIERMGNMPISHLIFTKLDETLTLGPVLEIALNFDIPISFLTVGQNVPNDIE 429

Query: 300 PFVAKDFSAVITGCLDYGE 318
                    +  G   YG+
Sbjct: 430 VASTDRIVNMALG-GGYGD 447


>gi|87311167|ref|ZP_01093290.1| flagellar biosynthesis protein FlhF [Blastopirellula marina DSM
           3645]
 gi|87286075|gb|EAQ77986.1| flagellar biosynthesis protein FlhF [Blastopirellula marina DSM
           3645]
          Length = 382

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 24/268 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW--D 106
           L D LI +++   +A ++   L      ++++      D+ + +H+++    +  N   D
Sbjct: 134 LHDELIAAEVAPQIAAQLAGHL------EEIAAVTHERDLRQRLHQIIAATFRIGNDLED 187

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               P  I +VG  GVGKTT I KL+ +      L+V L   DT+R AA+DQL+ +A+  
Sbjct: 188 PRRGPLRIALVGPTGVGKTTTIAKLAARAKFTQKLRVGLITIDTYRIAAVDQLQAYAEIM 247

Query: 166 SADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                V S       A+ + A         D + IDTAGR   +++ +  +  ++R  + 
Sbjct: 248 DLPMQVVSSPSEMRDAVDHLA-------GCDRIFIDTAGRSPRDAVQLQQLHSVLRAAE- 299

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
                  +   +L ATTG  +L++ E   A    T LI TK+D     G +  ++    +
Sbjct: 300 -----TDARYLLLSATTGNRSLQEAERRFASIDPTALIATKLDEVETLGAMFNLINRTTL 354

Query: 285 PVYFLGVGEGIND-LEPFVAKDFSAVIT 311
           P+ ++  G+ +   +    A + +  + 
Sbjct: 355 PISYVTHGQDVPHSIAVASADELAKQLI 382


>gi|152997432|ref|YP_001342267.1| GTP-binding signal recognition particle [Marinomonas sp. MWYL1]
 gi|150838356|gb|ABR72332.1| GTP-binding signal recognition particle SRP54 G- domain
           [Marinomonas sp. MWYL1]
          Length = 427

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 26/251 (10%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           V  ++++++      ++    R+L  +++ I         P     S     I  +G  G
Sbjct: 181 VVSRLIDDI--DLKGREDDWNRLLAHLADYI---------PIRSSSSELRGCIAFMGPTG 229

Query: 122 VGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           VGKTT IGK++ +  +      V+L   DT+R AA +QL+ +    +         SD  
Sbjct: 230 VGKTTTIGKIAAQHVLKHGSEGVVLITTDTYRIAAHEQLRTFGRILNVPVEVVNEYSDLN 289

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +       A+     ++++DTAG    +S L   +  M R        A    L VL  
Sbjct: 290 EVL------AKYANYSLVLVDTAGMNPRDSNLERQLLMMKRAR------ASLKKLLVLPC 337

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298
           T+ +  L+ V   ++     G +++K+D +A  G  I +V+   +PV ++  G+ I +D+
Sbjct: 338 TSQRQVLKTVVDVYSQVQLDGCVLSKLDESASLGEAISVVIEEGLPVVYIADGQRIPDDI 397

Query: 299 EPFVAKDFSAV 309
           EP  A +  + 
Sbjct: 398 EPARAHNLISR 408


>gi|297798906|ref|XP_002867337.1| signal recognition particle receptor alpha subunit family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297313173|gb|EFH43596.1| signal recognition particle receptor alpha subunit family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 633

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 143/341 (41%), Gaps = 55/341 (16%)

Query: 2   SNQKVAS-ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRS 56
           S++K A  +   W                     I     L+        + L++ L+  
Sbjct: 316 SDEKPAEAKKKGWF--------------SSVFQSITGKANLERTDLGPALKALKERLMTK 361

Query: 57  DIGVAVAQKIVEELLTKRYA-----KDVSVQRVLYDVSELIHKMLMPLSKPFN------- 104
           ++     ++I E+L     A     K  S  R+   V   +   L+ +  P         
Sbjct: 362 NV----VEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMEDALVRILTPRRSIDILRD 417

Query: 105 ---WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                   +P+V++ VGVNGVGK+T + K++  +    + VM+AA DTFRS A++QL+  
Sbjct: 418 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTH 477

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A R            D A +A EA ++A     DV+++DTAGR+ +N  LM  + K+I +
Sbjct: 478 ARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINL 537

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TA 270
                 + P  VL V +A  G +A+ Q+  F+                G+++TK D    
Sbjct: 538 ------NQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDD 591

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           + G  + +V     PV F+G G+   DL+    K     + 
Sbjct: 592 KVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLL 632


>gi|169831893|ref|YP_001717875.1| flagellar biosynthesis regulator FlhF [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638737|gb|ACA60243.1| GTP-binding signal recognition particle SRP54, G- domain
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 413

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/270 (22%), Positives = 116/270 (42%), Gaps = 26/270 (9%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPF 103
           + EE+E L         +   ++ EL  +     +    +    +   I +++ P     
Sbjct: 160 LLEEVEIL-------PDLTTHLIAELRRQVDPLHIQRNDLARICLQNEIVRLVEP----- 207

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWA 162
            +  + +  ++  VG  GVGKTT + K++ + +   G    +   DT+R  A++QL I+A
Sbjct: 208 AYAQAAQKRIMAFVGPTGVGKTTTLAKMAAQYTLFHGKSCAIITIDTYRIGAVEQLNIYA 267

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           +         EI       A +A ++ Q K+   + +DTAGR   NS  +A +     VL
Sbjct: 268 EIMGVPL---EIAMSPQDFA-KAVQRHQNKEF--IFVDTAGRPARNSEKVAELHSYFAVL 321

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                  P  V+ VL + T    L +          + LI TK+D T   G ++ ++   
Sbjct: 322 -----DEPADVILVLSSNTKHRDLLRAVRHFGKVNYSKLIFTKVDETDTLGCILNMICHT 376

Query: 283 KIPVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
            +PV  +  G+ + +D++    K  + ++T
Sbjct: 377 GMPVIQITDGQNVPDDIQNMYPKKLAKLLT 406


>gi|15234792|ref|NP_194789.1| signal recognition particle receptor alpha subunit family protein
           [Arabidopsis thaliana]
 gi|7269961|emb|CAB79778.1| signal recognition particle receptor-like protein [Arabidopsis
           thaliana]
 gi|18086492|gb|AAL57699.1| AT4g30600/F17I23_60 [Arabidopsis thaliana]
 gi|22137194|gb|AAM91442.1| AT4g30600/F17I23_60 [Arabidopsis thaliana]
 gi|332660385|gb|AEE85785.1| signal recognition particle receptor subunit alpha [Arabidopsis
           thaliana]
          Length = 634

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 40/320 (12%)

Query: 22  ASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA- 76
           A            I     L+        + L++ L+  ++    A++I E+L     A 
Sbjct: 324 AKKKGWFSSVFQSITGKANLERTDLGPALKALKERLMTKNV----AEEIAEKLCESVEAS 379

Query: 77  ----KDVSVQRVLYDVSELIHKMLMPLSKPFN----------WDFSHRPHVILVVGVNGV 122
               K  S  R+   V   +   L+ +  P                 +P+V++ VGVNGV
Sbjct: 380 LEGKKLSSFTRISSTVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGV 439

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GK+T + K++  +    + VM+AA DTFRS A++QL+  A R            D A +A
Sbjct: 440 GKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVA 499

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            EA ++A     DV+++DTAGR+ +N  LM  + K+I +      + P  VL V +A  G
Sbjct: 500 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINL------NQPDLVLFVGEALVG 553

Query: 243 QNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGV 291
            +A+ Q+  F+                G+++TK D    + G  + +V     PV F+G 
Sbjct: 554 NDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAALSMVYISGSPVMFVGC 613

Query: 292 GEGINDLEPFVAKDFSAVIT 311
           G+   DL+    K     + 
Sbjct: 614 GQSYTDLKKLNVKAIVKTLL 633


>gi|312879608|ref|ZP_07739408.1| flagellar biosynthetic protein FlhF [Aminomonas paucivorans DSM
           12260]
 gi|310782899|gb|EFQ23297.1| flagellar biosynthetic protein FlhF [Aminomonas paucivorans DSM
           12260]
          Length = 428

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 26/268 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L+RS++   VA +++EE          ++   L     ++       + P+N     R  
Sbjct: 184 LLRSEVDPEVASRLLEEF---HREPGENLAAWLAGRIPVLA------ADPWNALGGKR-- 232

Query: 113 VILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            I+ VG  GVGKTT I K++       G KV+L   DT+R AA++QL+ +A         
Sbjct: 233 -IMFVGPTGVGKTTSIAKIAAIHSLWEGRKVVLVTADTYRIAAVEQLRTYAKILGIPLEV 291

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +    +   +        + +  D++++DTAGR H ++  M  +  +  +        P 
Sbjct: 292 AFDPQELEGILT------KHRNADLVLLDTAGRSHKDAKRMDELKGLHEIF------CPD 339

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
           +V  VL +      +  V     V     ++ TKMD T+  G L+ +V    +P+ F  V
Sbjct: 340 AVHLVLASNLKYRDMLDVIDRMGVVPLKSILFTKMDETSTFGPLLNVVEDFDLPLSFFTV 399

Query: 292 GEGIN-DLEPFVAKDFSAVITGCLDYGE 318
           G+ +  D+E       + ++ G    G+
Sbjct: 400 GQNVPNDIEVARGDRLAGLVVGGDRLGD 427


>gi|240280412|gb|EER43916.1| signal sequence receptor alpha subunit [Ajellomyces capsulatus
           H143]
          Length = 823

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 129/289 (44%), Gaps = 41/289 (14%)

Query: 23  STSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVE----ELLTKR 74
           S+   +     +I+  + L     D   + +E+ L++ ++    A ++ +    EL+ K+
Sbjct: 332 SSLGAISGLFRNIVGGKVLTKADLDKPLKAMEEHLLKKNVAREAAVRLCDGVEQELIGKK 391

Query: 75  YAKDVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNG 121
                S+   L    E  + K+L P            ++ P N     RP+VI +VGVNG
Sbjct: 392 TGSFQSIDAALRAAMESSLRKILTPTSSLDLLREIEAVTSPSNSQNRRRPYVISIVGVNG 451

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVC 171
           VGK+T + K+   +     +V++AA DTFRS A++QL++ A               +   
Sbjct: 452 VGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVEQLRVHARNLKELSARENVGQVELYE 511

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G DAA +A +A   A     DV++IDTAGR HN+  LM+ + K  +         P 
Sbjct: 512 KGYGKDAANVAKDAVAYAAMNNFDVVLIDTAGRRHNDQRLMSSLEKFAKF------AQPD 565

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARGGGLI 276
            +  V +A  G +++ Q   F+   G      G IM+K D      G +
Sbjct: 566 KIFMVGEALVGTDSVMQARNFNQAFGTGRKLDGFIMSKCDTVGDMVGAL 614


>gi|153810624|ref|ZP_01963292.1| hypothetical protein RUMOBE_01008 [Ruminococcus obeum ATCC 29174]
 gi|149833020|gb|EDM88102.1| hypothetical protein RUMOBE_01008 [Ruminococcus obeum ATCC 29174]
          Length = 211

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 78/206 (37%), Positives = 114/206 (55%), Gaps = 4/206 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++     + ++L  G   T   +  G   I S    +D+   EELE++LI  DIG+    
Sbjct: 1   MSERKKGFFKRLVSGLTKTRDNIVAGFDSIFSGYSSIDEDFYEELEEILIMGDIGINATS 60

Query: 65  KIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            I+E L  +   K +         +   I + +   S    ++F +R  VILV+GVNGVG
Sbjct: 61  AIIEHLKEQVAEKHIKNPMECKQLLINSIKEQMRVDSTE--YEFENRKSVILVIGVNGVG 118

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT +GKL+ K+ D G KV+LAA DTFR+AA +QL  WA+R   D +  + G+D A++ Y
Sbjct: 119 KTTSVGKLAGKLKDQGKKVILAAADTFRAAAGEQLAQWANRAGVDLIGGQEGADPASIVY 178

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +A   A+A+  DVLI DTAGRLH   
Sbjct: 179 DAVAAAKARNADVLICDTAGRLHKQK 204


>gi|160880826|ref|YP_001559794.1| GTP-binding signal recognition particle [Clostridium
           phytofermentans ISDg]
 gi|160429492|gb|ABX43055.1| GTP-binding signal recognition particle SRP54 G- domain
           [Clostridium phytofermentans ISDg]
          Length = 404

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 120/265 (45%), Gaps = 17/265 (6%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH- 109
           + LI  D+    A +++ E+      KD ++    Y +     K+++ L +P   ++S  
Sbjct: 151 NQLISHDVDEKYANQVIAEI-DPMLKKDTTID---YILGNFYQKIILKLGQPKTIEYSGG 206

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           +   I  +G  GVGKTT I K++         K+ L   DT+R AA++QLK +AD     
Sbjct: 207 KTKFIYFIGPTGVGKTTTIAKIASSYKVEKQAKIALMTSDTYRIAAVEQLKTYADILDVP 266

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                  ++      EA  + +    D+++IDTAGR H +      I K++ ++    P 
Sbjct: 267 LRVIYSETEMK----EAMDEFKD--YDLVLIDTAGRSHKSKEQRDDIDKLVHIV----PE 316

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
               V  VL ATT    L ++   ++      LI TK+D T   G +  I +    P+ +
Sbjct: 317 EDREVYLVLSATTKYKDLIRIADTYSDIVNYRLIFTKLDETIGIGNIFNIRMYTNAPLSY 376

Query: 289 LGVGEGI-NDLEPFVAKDFSAVITG 312
              G+ + +D+E   A+  +  + G
Sbjct: 377 ATFGQNVPDDIEKLDAQSIARQLLG 401


>gi|225561032|gb|EEH09313.1| signal sequence receptor alpha subunit [Ajellomyces capsulatus
           G186AR]
          Length = 914

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 129/289 (44%), Gaps = 41/289 (14%)

Query: 23  STSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVE----ELLTKR 74
           S+   +     +I+  + L     D   + +E+ L++ ++    A ++ +    EL+ K+
Sbjct: 332 SSLGAISGLFRNIVGGKVLTKADLDKPLKAMEEHLLKKNVAREAAVRLCDGVEQELIGKK 391

Query: 75  YAKDVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNG 121
                S+   L    E  + K+L P            ++ P N     RP+VI +VGVNG
Sbjct: 392 TGSFQSIDAALRAAMESSLRKILTPTSSLDLLREIEAVTSPSNSQKQRRPYVISIVGVNG 451

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVC 171
           VGK+T + K+   +     +V++AA DTFRS A++QL++ A               +   
Sbjct: 452 VGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVEQLRVHARNLKELSARENVGQVELYE 511

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G DAA +A +A   A     DV++IDTAGR HN+  LM+ + K  +         P 
Sbjct: 512 KGYGKDAANVAKDAVAYAAVNNFDVVLIDTAGRRHNDQRLMSSLEKFAKF------AQPD 565

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARGGGLI 276
            +  V +A  G +++ Q   F+   G      G IM+K D      G +
Sbjct: 566 KIFMVGEALVGTDSVMQARNFNQAFGTGRKLDGFIMSKCDTVGDMVGAL 614


>gi|89098623|ref|ZP_01171505.1| flagellar biosynthesis regulator FlhF [Bacillus sp. NRRL B-14911]
 gi|89086585|gb|EAR65704.1| flagellar biosynthesis regulator FlhF [Bacillus sp. NRRL B-14911]
          Length = 381

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 113/270 (41%), Gaps = 18/270 (6%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
            +++++ L   ++  ++ ++++E+LL K Y  D+        ++  + ++L    +   +
Sbjct: 122 LKKVQEELAGQEVEPSIIEELMEKLLVKWYKSDLEPDFNK--INSWLRELLTAKLETAQY 179

Query: 106 D-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWAD 163
              +    +I  VG  GVGKTT + K++ +       K      DT+R AAIDQLK +AD
Sbjct: 180 GGIAFDHKIINFVGPTGVGKTTTLAKIAAECVIKQKKKTAFITTDTYRIAAIDQLKTYAD 239

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                        D  A    A    +    +V++IDTAGR   N   +  +  ++    
Sbjct: 240 ILDVPMEVCYTEEDFKA----AVDTFKD--FEVILIDTAGRNFRNPKYVQELKSLLEAES 293

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                       VL  T+ Q  + +     +V      I TK D T+  G L+ I+    
Sbjct: 294 S-------QTYLVLSLTSKQRDMEETIKQFSVVDINRFIFTKADETSTFGPLLNIIDKTG 346

Query: 284 IPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
               +L  G+ + +DL P   K  +  I G
Sbjct: 347 KGAAYLTTGQNVPDDLVPAGPKTIAGAIMG 376


>gi|289578413|ref|YP_003477040.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter italicus
           Ab9]
 gi|297544689|ref|YP_003676991.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528126|gb|ADD02478.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter italicus
           Ab9]
 gi|296842464|gb|ADH60980.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 341

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 120/299 (40%), Gaps = 38/299 (12%)

Query: 1   MSNQKVASESLSWIRKLTKGFA-STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           +  + +    ++ ++ L K  A + +  + +     + S+ +D G+  E+ +LL      
Sbjct: 61  IPKESITKNDINELKNLIKTIATNKNEAVTQTKEKTLVSKLIDYGIEREVSELLGEG--- 117

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
                  ++EL  +                +++ + L     P     + +   IL +G 
Sbjct: 118 -------IDELDERGI--------------KILKERLEAFMGPPQKLDTEKSKKILFIGP 156

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
            GVGKTT I K++   + + G  +ML   D FR AA+DQLK + +             + 
Sbjct: 157 TGVGKTTTIAKIASNLILNEGKNIMLVTADIFRIAAVDQLKTYGEILGVPVKVVNNIFEL 216

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             L      Q + +K DV++IDTAGR H +   +  +   I+                L 
Sbjct: 217 HKL------QLEFEKYDVVLIDTAGRSHKDEKRINELKTFIKYAN------CDETYLCLS 264

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           ATT    L++V   +  A    LI TK+D T     ++  V     P+ +   G+ + D
Sbjct: 265 ATTKSEDLKEVIKRYEFAENYRLIFTKLDETDNYSSILNAVYYSGRPISYFTNGQIVPD 323


>gi|325096521|gb|EGC49831.1| signal sequence receptor alpha subunit [Ajellomyces capsulatus H88]
          Length = 748

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 42/290 (14%)

Query: 23  STSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVE----ELLTKR 74
           S+   +     +I+  + L     D   + +E+ L++ ++    A ++ +    EL+ K+
Sbjct: 332 SSLGAISGLFRNIVGGKVLTKADLDKPLKAMEEHLLKKNVAREAAVRLCDGVEQELIGKK 391

Query: 75  YAKDVSVQRVLYDVSEL-IHKMLMP------------LSKPFNWDFSHRPHVILVVGVNG 121
                S+   L    E  + K+L P            ++ P N     RP+VI +VGVNG
Sbjct: 392 TGSFQSIDAALRAAMESSLRKILTPTSSLDLLREIEAVTSPSNSQKRRRPYVISIVGVNG 451

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVC 171
           VGK+T + K+   +     +V++AA DTFRS A++QL++ A               +   
Sbjct: 452 VGKSTNLSKICFFLLQNNYRVLIAACDTFRSGAVEQLRVHARNLKELSARENVGQVELYE 511

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              G DAA +A +A   A     DV++IDTAGR HN+  LM+ + K  +         P 
Sbjct: 512 KGYGKDAANVAKDAVAYAAMNNFDVVLIDTAGRRHNDQRLMSSLEKFAKF------AQPD 565

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLI 276
            +  V +A  G +++ Q   F+   G      G IM+K D      G L+
Sbjct: 566 KIFMVGEALVGTDSVMQARNFNQAFGTGRKLDGFIMSKCDTVGDMVGALL 615


>gi|229258560|gb|ACQ45585.1| cell division protein FtsY [Vesicomya sp. endosymbiont]
          Length = 194

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 80/195 (41%), Positives = 118/195 (60%), Gaps = 3/195 (1%)

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
              K +     LY  + + + K+ +      N   +    VILVVGVNG GKTT+IGKL+
Sbjct: 2   ASRKTLKDAESLYQFLKDELAKLFIK-DNQLNTSINET-FVILVVGVNGSGKTTLIGKLA 59

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K   D G  VMLAAGDTFR+AAI+QL IW    +   V   +G+D A++ ++A++ AQAK
Sbjct: 60  KSFQDQGKSVMLAAGDTFRAAAIEQLIIWGRLNNIPVVAQTLGADTASVIFDAYQSAQAK 119

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
            +D+LI DTAGRLH    LM  +GK+ RV+ + + +APH  + V+D  +GQN + Q + F
Sbjct: 120 NIDILIADTAGRLHTQKNLMKELGKIKRVITKQNKNAPHETMLVIDGGSGQNVINQAKEF 179

Query: 253 HAVAGTTGLIMTKMD 267
           +     + + +TK+D
Sbjct: 180 NKSLTLSSISITKLD 194


>gi|296121395|ref|YP_003629173.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Planctomyces limnophilus DSM 3776]
 gi|296013735|gb|ADG66974.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Planctomyces limnophilus DSM 3776]
          Length = 626

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 112/254 (44%), Gaps = 17/254 (6%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +A+K++++L      K+++  +    +   + +  + LS+P        PHV+ +VG  
Sbjct: 362 NIARKLLKKLACLATPKELTDPQASRLLLLSLIEQELNLSRPVQI-APGTPHVVALVGPT 420

Query: 121 GVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDA 178
           GVGKTT + KL+ +       KV L   DTFR AA++QLK +A+       V S      
Sbjct: 421 GVGKTTTLAKLAAQARLREHRKVGLITVDTFRIAAVEQLKTYAEIMELPMRVVSSPAEMR 480

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           +A+   A        +D+++IDT+GR   + +    +  +      L     H +   + 
Sbjct: 481 SAMDDYAT-------MDLVLIDTSGRSPYDELKNQELKAI------LAEAHAHEIHLCIS 527

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND- 297
             +   +   +       G   LI+TK+D     G ++   +   +P+ +L  G+ + D 
Sbjct: 528 MASDPRSTTMIASKFITIGANQLILTKLDEIQDYGAVLATNLNSTLPLSYLTTGQEVPDH 587

Query: 298 LEPFVAKDFSAVIT 311
           LE   A   + +I 
Sbjct: 588 LERAAASRIARLIL 601


>gi|34581773|gb|AAQ76042.1| signal recognition particle receptor protein [Cucumis sativus]
          Length = 313

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 84/320 (26%), Positives = 141/320 (44%), Gaps = 40/320 (12%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLT----- 72
           A            I     LD    +   + L+D L+  ++    A++I E+L       
Sbjct: 3   AKKKGWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNV----AEEIAEKLCESVAAS 58

Query: 73  ---KRYAKDVSVQRVLYDVSEL-IHKMLMP------LSKPFNWDFSHRPHVILVVGVNGV 122
              K+ A    +   +    E  + ++L P      L          +P+V++ VGVNGV
Sbjct: 59  LEGKKLASFTRISSTVQAAMEEALVRILTPRRSIDILRDVHAAKEQKKPYVVVFVGVNGV 118

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GK+T + K++  +    + VM+AA DTFRS A++QL+  A R            D A +A
Sbjct: 119 GKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVA 178

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            EA ++A     DV+++DTAGR+ +N  LM  + K+I +      ++P  VL V +A  G
Sbjct: 179 KEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLINL------NSPDLVLFVGEALVG 232

Query: 243 QNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGV 291
            +A+ Q+  F+                G+++TK D    + G  + +V     PV F+G 
Sbjct: 233 NDAVDQLSKFNQKLADLSTSPEPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGC 292

Query: 292 GEGINDLEPFVAKDFSAVIT 311
           G+   DL+    K     + 
Sbjct: 293 GQSYTDLKKLNVKSIVKTLI 312


>gi|303240267|ref|ZP_07326786.1| flagellar biosynthetic protein FlhF [Acetivibrio cellulolyticus
           CD2]
 gi|302592177|gb|EFL61906.1| flagellar biosynthetic protein FlhF [Acetivibrio cellulolyticus
           CD2]
          Length = 394

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 16/262 (6%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L+++++   +A+++++ ++  R   + ++      +  LI  +L             +P 
Sbjct: 144 LLKNEVEGDIAKQLID-IIQSRVKDNANINDAGAVLYNLISGILGKPET-LKLREDGKPT 201

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           V++ VG  GVGKTT + K++   S +   KV L   DT+R AA++QLK +A+        
Sbjct: 202 VVIFVGPTGVGKTTTLAKIAANYSLNQKKKVGLITADTYRIAAVEQLKTYAEILGMPVEV 261

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
               ++          + + +  D+++IDTAGR + N      +  ++      D     
Sbjct: 262 IYSINEIND------AKDKYQDKDIILIDTAGRSYRNKSQFDELKMLV------DASHAD 309

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V  VL  TTG    R +   +       LI TK+D T   G ++         + ++ +
Sbjct: 310 EVFLVLSTTTGVRNCRDILASYDFLKDYKLIFTKLDETPALGIILNARRLTNRNLSYVTI 369

Query: 292 GEGI-NDLEPFVAKDFSAVITG 312
           G+ + +D+E       +  + G
Sbjct: 370 GQSVPDDIEVANIDKITKNLLG 391


>gi|224142381|ref|XP_002324537.1| predicted protein [Populus trichocarpa]
 gi|222865971|gb|EEF03102.1| predicted protein [Populus trichocarpa]
          Length = 312

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 140/320 (43%), Gaps = 40/320 (12%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLT----- 72
           A            I     L+    +   + L+D L+  ++    A++I E+L       
Sbjct: 2   AKKKGWFSSMFQSIAGKANLEKADLEPALKALKDRLMTKNV----AEEIAEKLCESVAAS 57

Query: 73  ---KRYAKDVSVQRVLYDVSEL-IHKMLMP------LSKPFNWDFSHRPHVILVVGVNGV 122
              K+ A    +   +    E  + ++L P      L          +P+V++ VGVNGV
Sbjct: 58  LEGKKLASFTRISSTVQAAMEEALVRILTPRRSIDILRDVHAAREQRKPYVVVFVGVNGV 117

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GK+T + K++  +    + VM+AA DTFRS A++QL+  A R            D A +A
Sbjct: 118 GKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVA 177

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            EA ++A     DV+++DTAGR+ +N  LM  + K+I +      + P  VL V +A  G
Sbjct: 178 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINL------NNPDLVLFVGEALVG 231

Query: 243 QNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGV 291
            +A+ Q+  F+                G+++TK D    + G  + +V     PV F+G 
Sbjct: 232 NDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGSPVMFVGC 291

Query: 292 GEGINDLEPFVAKDFSAVIT 311
           G+   DL+    K     + 
Sbjct: 292 GQSYTDLKKLNVKAIIKTLL 311


>gi|158320534|ref|YP_001513041.1| GTP-binding signal recognition particle [Alkaliphilus oremlandii
           OhILAs]
 gi|158140733|gb|ABW19045.1| GTP-binding signal recognition particle SRP54 G- domain
           [Alkaliphilus oremlandii OhILAs]
          Length = 409

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 127/251 (50%), Gaps = 17/251 (6%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGV 122
           +++++E+L+    ++V+   +  +  E + ++L+ L  +  N     +  V+  VG  GV
Sbjct: 170 EELIKEILSNGNFEEVNALEI--ENKETLREILLQLVPESINNKADFKSKVVFFVGSTGV 227

Query: 123 GKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           GKTT I K++   S + GLKV L + DT+R AA+ QLKI++D  +      E+      +
Sbjct: 228 GKTTTIAKIAANYSLEKGLKVGLISADTYRIAAVAQLKIYSDILNIPL---EVIYSPEEI 284

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            + A K+ +    DV++IDTAGR H N+  +  + K+++ +          V  V+ ATT
Sbjct: 285 -HGAIKRLE--NRDVILIDTAGRSHKNNEHVEELSKLLKEIHEK------EVCLVVSATT 335

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEP 300
             + LR +   +       +I TK+D  +  G ++ I + +   + ++  G+ + +D+E 
Sbjct: 336 KNSDLRDILHTYNFIDDYKIIFTKLDEVSTYGSILNIAMKNPQSISYVTTGQSVPDDIET 395

Query: 301 FVAKDFSAVIT 311
             +     ++ 
Sbjct: 396 ITSNTILNMLL 406


>gi|255099433|ref|ZP_05328410.1| flagellar biosynthesis regulator FlhF [Clostridium difficile
           QCD-63q42]
          Length = 338

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 28/288 (9%)

Query: 30  EGITDIISSRRLD---DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
           E +  II++   D   D   +++   L+  D+   + + I  +L           Q + +
Sbjct: 70  EQLKSIINNMGFDNKNDNDIDKICKNLLNLDLNQEIVEFIKADL-----------QEMKF 118

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLA 145
           +  +    ++  L K    +       I +VG  GVGKTT I KL+ K+      KV + 
Sbjct: 119 NGIDTSKNLVESLKKKIKIENQAINGKIALVGPPGVGKTTTIAKLAAKLVFEENKKVGVI 178

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             DT+R  A++QLKI+ D  +  F    I  D   LA +A K       DV++IDT GR 
Sbjct: 179 TIDTYRIGAVEQLKIYTDIMNIPF-KGVISPDEMELALDAMK-----DCDVVLIDTTGRG 232

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           + NS+ +  I  +I      D     ++  VL+ TT ++  + +   +       LI+TK
Sbjct: 233 YKNSMQILEIKNLI------DKAETDNIHLVLNCTTRESDTKAIIDSYRNVNFKSLIITK 286

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           +D T   G +  I+   + P+ ++  G+ + +D+          ++ G
Sbjct: 287 LDETITYGSIFNIMNYAQKPISYITTGQNVPDDIIKPNEDKIIRLLLG 334


>gi|115951464|ref|XP_001188635.1| PREDICTED: similar to signal recognition particle receptor alpha
           subunit (sr-alpha), partial [Strongylocentrotus
           purpuratus]
          Length = 584

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 46/290 (15%)

Query: 19  KGFASTSLKLK--EGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72
           K  A T  +         ++ S+ LD      V +++ D L   ++   +A+K+ E + T
Sbjct: 297 KAQAKTGSRFGMFNMFRGLVGSKTLDKETMAPVLDKMRDHLTAKNVARDIAEKLCESVAT 356

Query: 73  KRYAKDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNG 121
           K   K + +  RV   V E + + L+ +  P                ++P  I   GVNG
Sbjct: 357 KLEGKVLGTFGRVTSVVKETLQESLVQILSPRRRVDILRDALEAKARNKPFSITFCGVNG 416

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------AD 168
           VGK+T + K+   + + G +V++AA DTFR+ A++QL+      +               
Sbjct: 417 VGKSTNLAKICFWLIENGFRVLIAACDTFRAGAVEQLRTHERHLNALHPAEKHGGHAPVQ 476

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                 G DAA +A EA K A+  + DV++IDTAGR+ +N  LM  + K+I+V      +
Sbjct: 477 LYEKGYGKDAAGIAMEAIKFARDYRFDVVLIDTAGRMQDNEPLMRALSKLIKV------N 530

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG 268
            P  VL V +A  G  A+ Q+  F+                G+++TK D 
Sbjct: 531 RPDLVLFVGEALVGNEAVDQLTKFNHALADFSDSDDPRLIDGIVLTKFDT 580


>gi|55274300|gb|AAV49042.1| signal recognition particle GTPase [Azospirillum lipoferum]
          Length = 276

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/154 (48%), Positives = 102/154 (66%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
              W  KL +G + +S KL +GIT I + R+LDD   EELE+LLI +D+G A A K+  E
Sbjct: 103 KKGWFAKLKEGLSKSSSKLTDGITSIFTKRKLDDEALEELEELLITADLGPATAAKVTAE 162

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L   R+ K+VS + V   ++  + K++ P+++P   D + +PHVILVVGVNG GKTT IG
Sbjct: 163 LARTRFGKEVSPEEVKSTLAAEVAKIVTPVARPLVLDPALKPHVILVVGVNGTGKTTTIG 222

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           KL+++    G  VMLAAGDTFR+AA+ QLKI   
Sbjct: 223 KLARQFKAEGKSVMLAAGDTFRAAAVSQLKILGR 256


>gi|56419774|ref|YP_147092.1| flagellar biosynthesis regulator FlhF [Geobacillus kaustophilus
           HTA426]
 gi|56379616|dbj|BAD75524.1| flagellar biosynthetic protein (flagellar GTP-binding protein)
           [Geobacillus kaustophilus HTA426]
          Length = 409

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 117/272 (43%), Gaps = 25/272 (9%)

Query: 48  ELEDLLI---RSDIGVAVAQKIVEELLTKRYA-KDVSVQRVLYD-VSELIHKMLMPLSKP 102
           E E  L+    +D+     +++++ LL + YA KD      +     E +  +L  L  P
Sbjct: 152 EAERRLVRQGMADV---YVRQVMDRLLERWYADKDSRSPAAVSAWTKEAVRDLLSTL--P 206

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIW 161
           F      + ++IL+ G  GVGKTT + K++ +   + G KV     DT+R AAIDQLK +
Sbjct: 207 FVKTAEQKKYMILL-GPTGVGKTTTLAKMAGRAVLEQGKKVGFITADTYRIAAIDQLKTY 265

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           AD   A         D          + +    D++ +DTAGR   N   +  + + +  
Sbjct: 266 ADILHAPLEVCYNADDFRT------AKRKLAGCDLVFVDTAGRNFRNPQYVDELQQTLEF 319

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                  +      V  AT   + ++ +    +      LI+TK+D T   G ++ +++ 
Sbjct: 320 ------DSETETFLVFAATGKYDDMKMIYNHFSRLPIDRLIVTKLDETDSFGTIVNVLLD 373

Query: 282 HKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
            ++   +   G+ + +D+    A     ++ G
Sbjct: 374 SRLAAAYFTNGQNVPDDMVEASADRLVHLLFG 405


>gi|326796450|ref|YP_004314270.1| flagellar biosynthetic protein FlhF [Marinomonas mediterranea
           MMB-1]
 gi|326547214|gb|ADZ92434.1| flagellar biosynthetic protein FlhF [Marinomonas mediterranea
           MMB-1]
          Length = 432

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 140/318 (44%), Gaps = 35/318 (11%)

Query: 1   MSNQKVASESLSW---IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR-- 55
           + N +  S+ +     + +L      T  ++++   +  +     +   + ++  L++  
Sbjct: 122 IKNSESPSQLIEMERELERLKSELKETKEQIEDK-AEHSAKSNYSETPEQYIQGRLVKLG 180

Query: 56  -SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
            SDI   V +KIV+   +    ++   ++ L  +++ +     P+++    D +H    I
Sbjct: 181 LSDI---VIEKIVDH--SNFLGREDDWKKALSRLADYL-----PVARQ---DMAHMSGCI 227

Query: 115 LVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
             +G  GVGKTT IGK++ +  + +    V+L   DT+R AA +QL+ +    +      
Sbjct: 228 AFMGPTGVGKTTSIGKIAAQHVLKNGADSVVLVTTDTYRIAAHEQLRTFGRILNVPVEVV 287

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              SD   +        +     ++++DTAG    +  L   +  M +    L       
Sbjct: 288 NEYSDLNEVLD------KYSNYSLVLVDTAGMNPRDRNLERQLKMMQKARGYLKK----- 336

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L VL  T+ +  L+ V   ++     G +++K+D +A  G  I +V+   +PV ++  G
Sbjct: 337 -LLVLPCTSQRQVLKTVVDVYSQIQLDGCVLSKIDESASLGEAISVVIEEGLPVMYVADG 395

Query: 293 EGI-NDLEPFVAKDFSAV 309
           + I +D+EP  A +  + 
Sbjct: 396 QRIPDDIEPARAHNLISR 413


>gi|296133028|ref|YP_003640275.1| flagellar biosynthetic protein FlhF [Thermincola sp. JR]
 gi|296031606|gb|ADG82374.1| flagellar biosynthetic protein FlhF [Thermincola potens JR]
          Length = 389

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 119/265 (44%), Gaps = 19/265 (7%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR- 110
           +LI +++  A+A KI++ LL    A++      L    E    ML  L +P    F  + 
Sbjct: 136 ILIDNEVEEALAAKILKGLLKTYPAEEPVEGHKLKKSLE--QSMLKILRRPKPITFKKQG 193

Query: 111 --PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
               V+ ++G  GVGKTT I KL+   S     KV L   DT+R AA++QLK + +    
Sbjct: 194 LHQQVVALIGPTGVGKTTTIAKLAATFSIVDKKKVALITADTYRVAAVEQLKTYGEIIGI 253

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    +            Q    D+++IDTAGR H N   MA +         LD 
Sbjct: 254 PVNVVYTPEELRD------SIGQHTDKDLILIDTAGRSHKNVAQMAELKAY------LDA 301

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
                +L VL ATT    + ++   ++    T L+ TK+D T+  G ++ I+   +  + 
Sbjct: 302 ADVTEILLVLSATTKYKDMLEIINSYSDIPLTKLVFTKLDETSTYGAILNIINKTQKHLS 361

Query: 288 FLGVGEGI-NDLEPFVAKDFSAVIT 311
           ++ VG+ + +D+E    +    +I 
Sbjct: 362 YVTVGQNVPDDIEIADPEKIVKMIV 386


>gi|302392374|ref|YP_003828194.1| flagellar biosynthetic protein FlhF [Acetohalobium arabaticum DSM
           5501]
 gi|302204451|gb|ADL13129.1| flagellar biosynthetic protein FlhF [Acetohalobium arabaticum DSM
           5501]
          Length = 360

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 132/313 (42%), Gaps = 25/313 (7%)

Query: 3   NQKVASESLSWIRKLTKGFASTSL-KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
            QKV SE     + +          KL+   T++           +E+ D L+   I   
Sbjct: 67  KQKVESELNQVKQMMGNVLQKLEENKLQSSYTNL-------PENLKEVVDRLLAQGITDE 119

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +A +I+  +  K   K++  + ++  + SE I   L P+S P          V+  +G  
Sbjct: 120 LATEILIAVNDKLGPKEIEDKEIIKSLFSEEIKARLNPVS-PITLS-DQESKVVAFIGPT 177

Query: 121 GVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           GVGKTT + KL+   S      V L   DT+R AA++QLK +++  +             
Sbjct: 178 GVGKTTTVAKLAADFSLTKNKDVGLVTADTYRIAAVEQLKTYSEIINVPLEVVYNS---- 233

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A   +A  +  AK  D++++DTAGR  NN + M+ +  ++  +   + H       VL A
Sbjct: 234 AELEQALDKFAAK--DLVLVDTAGRSQNNEMHMSELDALLAKIDVAEKH------LVLSA 285

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DL 298
            T    L  + +     G    I TK+D T   G L+ I+      + ++  G+ +  D+
Sbjct: 286 ITKFKDLLDIILSFQQIGLDKFIFTKLDETKDLGMLVNIIDQFDAELSYITNGQNVPEDI 345

Query: 299 EPFVAKDFSAVIT 311
           E F  +     + 
Sbjct: 346 EVFKPEKIVNSLL 358


>gi|253702436|ref|YP_003023625.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Geobacter sp. M21]
 gi|251777286|gb|ACT19867.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Geobacter sp. M21]
          Length = 481

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 108/259 (41%), Gaps = 21/259 (8%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PHVI 114
           D+G A  + ++E +              + ++  L+ + L  + K        +  P ++
Sbjct: 235 DVGPATIELLMEAIRPAARG-----GAGIGELRNLMSEALAGMIKCSGSLRIKKTGPRIV 289

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            VVG  GVGKTT I K++   +      V +   D FR  A++QLK +A         + 
Sbjct: 290 AVVGPTGVGKTTTIAKIAALYALNRRVSVAMVTMDNFRVGAVEQLKTYAKIMDLPLEVAG 349

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              +           A+    D+++IDTAGR   +S  +  +   +     +D      V
Sbjct: 350 NSQELGK------ALARHSDKDLIMIDTAGRSPKDSERLDELKGYLEAHNGID------V 397

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
              L ATT    + ++         T L+ TK+D +   G ++   + HK+P+ +   G+
Sbjct: 398 YLCLSATTRTREIDEIIATFGTLPITKLLFTKLDESRSLGCIVDTYLKHKVPLSYFSTGQ 457

Query: 294 GIN-DLEPFVAKDFSAVIT 311
            +  D+E   ++  ++++ 
Sbjct: 458 KVPEDIEVANSRKLASLVV 476


>gi|225850279|ref|YP_002730513.1| flagellar biosynthetic protein FlhF [Persephonella marina EX-H1]
 gi|225646263|gb|ACO04449.1| flagellar biosynthetic protein FlhF [Persephonella marina EX-H1]
          Length = 374

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 132/296 (44%), Gaps = 24/296 (8%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE---LLTKRYAKD 78
             +   + E  ++  +   L      EL + L+  D+   VA+K+V+E   L       D
Sbjct: 97  EKSQQLVSEQFSE-FTGEAL------ELINQLLNRDVLPDVAKKLVKEGCGLDIDTNRWD 149

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-D 137
           ++       + + I K +   + PF+ +      ++  VG  GVGKTT + K++     +
Sbjct: 150 LNTLTSKEALIKGIRKYIK-FTGPFDQE-KEGLKILTFVGPTGVGKTTNLFKIASHFVIN 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
             +KV + + DTF+  A  Q +I+A+  +  F  +       +   E       +  D +
Sbjct: 208 QKMKVAVISTDTFKVGATQQARIYANILNIPFYSASESKKLKSTVSE------LENYDFI 261

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDT GR H +      +G++  +L  L     H VL V      ++A   V  + +   
Sbjct: 262 LIDTVGRSHYD---YWRLGEIKEILGDL-SENMHIVLTVSCNFKNEDAFEVVNRYSSFFD 317

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITG 312
              L+ TK+D T++ G L+ + V  KIPV ++  G+ +  D++    ++ ++ I G
Sbjct: 318 IDSLLFTKIDETSKPGLLLNLPVETKIPVSYISTGQRVPEDIKILKPENITSYILG 373


>gi|167037648|ref|YP_001665226.1| GTP-binding signal recognition particle [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040309|ref|YP_001663294.1| GTP-binding signal recognition particle [Thermoanaerobacter sp.
           X514]
 gi|256750761|ref|ZP_05491646.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914393|ref|ZP_07131709.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter sp. X561]
 gi|307724371|ref|YP_003904122.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter sp. X513]
 gi|320116063|ref|YP_004186222.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166854549|gb|ABY92958.1| GTP-binding signal recognition particle SRP54, G- domain
           [Thermoanaerobacter sp. X514]
 gi|166856482|gb|ABY94890.1| GTP-binding signal recognition particle SRP54, G- domain
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256750344|gb|EEU63363.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889328|gb|EFK84474.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter sp. X561]
 gi|307581432|gb|ADN54831.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter sp. X513]
 gi|319929154|gb|ADV79839.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 341

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 119/299 (39%), Gaps = 38/299 (12%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLK-LKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           +  + +    ++ ++ L K  A+     + E     + S+ +D G+  E+  LL      
Sbjct: 61  IPKESITKNDINELKNLIKTIATNKNGTVTEAKEKTLVSKLIDYGIEREVSQLL------ 114

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
                             D    + +  + E I   + P  K  N + S +   IL +G 
Sbjct: 115 --------------GEGIDEFDNKGIKILKERIDAFMGPPQK-LNTEKSKK---ILFIGP 156

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
            GVGKTT I K++   + + G  VML   D FR AA+DQLK + +             D 
Sbjct: 157 TGVGKTTTIAKIASNLILNEGKNVMLVTADIFRIAAVDQLKTYGEILGVPVKVVNNIFDL 216

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             L      Q + +K DV++IDTAGR H +   +  +   I+                L 
Sbjct: 217 HKL------QPEFEKYDVVLIDTAGRSHKDEKRINELKTFIKYAN------CDETYLCLS 264

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           ATT    L++V   +  AG   LI TK+D T     ++  V     P+ +   G+ + D
Sbjct: 265 ATTKSEDLKEVIKRYEFAGNYKLIFTKLDETDNYSSILNAVYYSGRPISYFTNGQIVPD 323


>gi|253573539|ref|ZP_04850882.1| GTP-binding signal recognition particle SRP54 G [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251847067|gb|EES75072.1| GTP-binding signal recognition particle SRP54 G [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 472

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 118/268 (44%), Gaps = 19/268 (7%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRY--AKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           ++  L+  ++G  +A + VEE+        K +S   +   +  +++  L       +  
Sbjct: 216 IQQQLMSQEVGPELADRWVEEVYEAWLSSGKTLSDDDMQARLRTIVNSFL---DHRIDAG 272

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
              +  ++ + G  GVGKTT I KL+  ++     KV     DT+R +AI+QL+ +A   
Sbjct: 273 IGDQTRIVYIAGPTGVGKTTTIAKLAADQIFRLHKKVGFITADTYRISAIEQLRTYATIL 332

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +      E+      +   A ++ +    D++++DTAGR + N + +A +  +      L
Sbjct: 333 NVPL---EVVQSPGDV-QRAMQRLE--HCDLILMDTAGRNYLNELFVAELHSL------L 380

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            P        VL  T+    ++++    +      LI TK+D T   G +  ++  +   
Sbjct: 381 APSDVSETYLVLSLTSKAQDMKRITEHFSKYNLDKLIFTKLDETETTGAIFNLLNEYPFK 440

Query: 286 VYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           V FL  G+ + +DL    A+    ++ G
Sbjct: 441 VSFLTNGQNVPDDLLQADAELMVDMLLG 468


>gi|290889936|ref|ZP_06553022.1| hypothetical protein AWRIB429_0412 [Oenococcus oeni AWRIB429]
 gi|290480378|gb|EFD89016.1| hypothetical protein AWRIB429_0412 [Oenococcus oeni AWRIB429]
          Length = 156

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/147 (44%), Positives = 95/147 (64%)

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           WA R   D V  +  SD A++ ++  K++     D+L +DTAGRL NN  LM  + KM +
Sbjct: 2   WAHRDQVDVVTGKEKSDPASVVFDGVKKSIDGHYDILFVDTAGRLQNNDNLMRELEKMKK 61

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           ++ R  P+AP  VL VLDATTGQNAL+Q  +F      TGL++TK+DGTA+GG ++ I  
Sbjct: 62  IITRQLPNAPQEVLLVLDATTGQNALQQARLFKDSTDVTGLVLTKLDGTAKGGIVLAIRQ 121

Query: 281 THKIPVYFLGVGEGINDLEPFVAKDFS 307
              +PV ++G+GE ++DLEPF A +F 
Sbjct: 122 ELHLPVKWVGLGEKVDDLEPFNADEFV 148


>gi|260682045|ref|YP_003213330.1| flagellar biosynthesis regulator FlhF [Clostridium difficile CD196]
 gi|260685643|ref|YP_003216776.1| flagellar biosynthesis regulator FlhF [Clostridium difficile
           R20291]
 gi|260208208|emb|CBA60561.1| signal recognition particle complex, GTP-binding subunit
           [Clostridium difficile CD196]
 gi|260211659|emb|CBE01924.1| signal recognition particle complex, GTP-binding subunit
           [Clostridium difficile R20291]
          Length = 337

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 39/311 (12%)

Query: 29  KEGITDIISSRRLD-------------DGVREELEDL-LIRSDIGVAV-----AQKIVEE 69
           K GI  I S + ++               ++ E+E L LI +++G          KI + 
Sbjct: 35  KSGIQGIFSKKDIELTIGWEKRENVEQKDLKREIEQLKLIINNMGFDNKNDNDIDKICKN 94

Query: 70  LLTKRYAKDV------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           LL+    +++       +Q + ++  +    ++  L K    +       I +VG  GVG
Sbjct: 95  LLSLELNEEIVESIRIDLQEMKFNGIDTSKNLVEILKKKIKIENQAINGKIALVGPPGVG 154

Query: 124 KTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT I KL+ K+      KV +   DT+R  A++QLKI+ D  +  F    I  D   LA
Sbjct: 155 KTTTIAKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPF-KGVISPDEMELA 213

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +  K       DV++IDT GR + NS+ +  I  +I      D     ++  V++ TT 
Sbjct: 214 LDEMK-----DCDVVLIDTTGRGYKNSMQILEIKNLI------DKAETDNIHLVVNCTTR 262

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301
           ++  + +   +       LI+TK+D T   G +  I+   + P+ ++  G+ + +D+   
Sbjct: 263 ESDTKAIIDSYRNVNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTGQNVPDDIIKP 322

Query: 302 VAKDFSAVITG 312
                  ++ G
Sbjct: 323 NEDKIIRLLLG 333


>gi|254973930|ref|ZP_05270402.1| flagellar biosynthesis regulator FlhF [Clostridium difficile
           QCD-66c26]
 gi|255091316|ref|ZP_05320794.1| flagellar biosynthesis regulator FlhF [Clostridium difficile CIP
           107932]
 gi|255312974|ref|ZP_05354557.1| flagellar biosynthesis regulator FlhF [Clostridium difficile
           QCD-76w55]
 gi|255515733|ref|ZP_05383409.1| flagellar biosynthesis regulator FlhF [Clostridium difficile
           QCD-97b34]
 gi|255648827|ref|ZP_05395729.1| flagellar biosynthesis regulator FlhF [Clostridium difficile
           QCD-37x79]
 gi|306518941|ref|ZP_07405288.1| flagellar biosynthesis regulator FlhF [Clostridium difficile
           QCD-32g58]
          Length = 338

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 39/311 (12%)

Query: 29  KEGITDIISSRRLD-------------DGVREELEDL-LIRSDIGVAV-----AQKIVEE 69
           K GI  I S + ++               ++ E+E L LI +++G          KI + 
Sbjct: 36  KSGIQGIFSKKDIELTIGWEKRENVEQKDLKREIEQLKLIINNMGFDNKNDNDIDKICKN 95

Query: 70  LLTKRYAKDV------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           LL+    +++       +Q + ++  +    ++  L K    +       I +VG  GVG
Sbjct: 96  LLSLELNEEIVESIRIDLQEMKFNGIDTSKNLVEILKKKIKIENQAINGKIALVGPPGVG 155

Query: 124 KTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT I KL+ K+      KV +   DT+R  A++QLKI+ D  +  F    I  D   LA
Sbjct: 156 KTTTIAKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPF-KGVISPDEMELA 214

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +  K       DV++IDT GR + NS+ +  I  +I      D     ++  V++ TT 
Sbjct: 215 LDEMK-----DCDVVLIDTTGRGYKNSMQILEIKNLI------DKAETDNIHLVVNCTTR 263

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301
           ++  + +   +       LI+TK+D T   G +  I+   + P+ ++  G+ + +D+   
Sbjct: 264 ESDTKAIIDSYRNVNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTGQNVPDDIIKP 323

Query: 302 VAKDFSAVITG 312
                  ++ G
Sbjct: 324 NEDKIIRLLLG 334


>gi|115702556|ref|XP_797190.2| PREDICTED: similar to signal recognition particle receptor alpha
           subunit (sr-alpha), partial [Strongylocentrotus
           purpuratus]
          Length = 563

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 46/290 (15%)

Query: 19  KGFASTSLKLK--EGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLT 72
           K  A T  +         ++ S+ LD      V +++ D L   ++   +A+K+ E + T
Sbjct: 276 KAQAKTGSRFGMFNMFRGLVGSKTLDKETMAPVLDKMRDHLTAKNVARDIAEKLCESVAT 335

Query: 73  KRYAKDV-SVQRVLYDVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNG 121
           K   K + +  RV   V E + + L+ +  P                ++P  I   GVNG
Sbjct: 336 KLEGKVLGTFGRVTSVVKETLQESLVQILSPRRRVDILRDALEAKARNKPFSITFCGVNG 395

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------AD 168
           VGK+T + K+   + + G +V++AA DTFR+ A++QL+      +               
Sbjct: 396 VGKSTNLAKICFWLIENGFRVLIAACDTFRAGAVEQLRTHERHLNALHPAEKHGGHAPVQ 455

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                 G DAA +A EA K A+  + DV++IDTAGR+ +N  LM  + K+I+V      +
Sbjct: 456 LYEKGYGKDAAGIAMEAIKFARDYRFDVVLIDTAGRMQDNEPLMRALSKLIKV------N 509

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG 268
            P  VL V +A  G  A+ Q+  F+                G+++TK D 
Sbjct: 510 RPDLVLFVGEALVGNEAVDQLTKFNHALADFSDSDDPRLIDGIVLTKFDT 559


>gi|260893859|ref|YP_003239956.1| flagellar biosynthetic protein FlhF [Ammonifex degensii KC4]
 gi|260866000|gb|ACX53106.1| flagellar biosynthetic protein FlhF [Ammonifex degensii KC4]
          Length = 350

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 109/255 (42%), Gaps = 22/255 (8%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            + V  +++  +L +    +      +  + E I  ++ PL             V  +VG
Sbjct: 103 ALEVEDELIGLILQRLEGAE----NEVTALEERIVDLVAPLYSRVEMAR-----VFALVG 153

Query: 119 VNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
             GVGKTT + KL+ ++S     +V+L   DT+R  A++QL+ +A+     F  +   ++
Sbjct: 154 PTGVGKTTTLAKLAARLSLYQHRRVVLVTIDTYRIGAVEQLRTYAEVMGVPFGVAMTPAE 213

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+        +  + D  ++DT GR       +A + + + VL       P  V  VL
Sbjct: 214 LRAILE------RYPEADHFLVDTVGRPGRRWEEIAELQEFLAVLPS-----PRDVGLVL 262

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-N 296
              T    L +        G   LI TK+D T   G ++ +V   K+P  ++  G+ + +
Sbjct: 263 SLNTRYRDLVRTAEAFRELGPNLLIFTKLDETDSWGPMLNLVYRLKLPALYVTTGQSVPD 322

Query: 297 DLEPFVAKDFSAVIT 311
           D+E    +  + ++ 
Sbjct: 323 DIEHLSPRRLARLLI 337


>gi|261419439|ref|YP_003253121.1| flagellar biosynthesis regulator FlhF [Geobacillus sp. Y412MC61]
 gi|319766254|ref|YP_004131755.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y412MC52]
 gi|261375896|gb|ACX78639.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y412MC61]
 gi|317111120|gb|ADU93612.1| flagellar biosynthetic protein FlhF [Geobacillus sp. Y412MC52]
          Length = 400

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 116/272 (42%), Gaps = 25/272 (9%)

Query: 48  ELEDLLI---RSDIGVAVAQKIVEELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKP 102
           E E  L+    +D+     +++++ LL + YA     S   V     E +  +L  L  P
Sbjct: 143 EAERRLVRQGMADV---YVRQVMDRLLERWYADKDGRSPAAVSAWTKEAVRDLLSTL--P 197

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIW 161
           F      + ++IL+ G  GVGKTT + K++ +   + G KV     DT+R AAIDQLK +
Sbjct: 198 FVKTAEQKKYMILL-GPTGVGKTTTLAKMAGRAVLEQGKKVGFITADTYRIAAIDQLKTY 256

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           AD   A         D          + +    D++ +DTAGR   N   +  + + +  
Sbjct: 257 ADILHAPLEVCYNADDFRT------AKRKLAGCDLVFVDTAGRNFRNPQYVDELQQTLEF 310

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                  +      V  AT   + ++ +    +      LI+TK+D T   G ++ +++ 
Sbjct: 311 ------DSETETFLVFAATGKYDDMKTIYNHFSRLPIDRLIVTKLDETDSFGTIVNVLLD 364

Query: 282 HKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
            ++   +   G+ + +D+    A     ++ G
Sbjct: 365 SRLAAAYFTNGQNVPDDMVEASADRLVHLLFG 396


>gi|320163424|gb|EFW40323.1| GTP-binding protein-PA [Capsaspora owczarzaki ATCC 30864]
          Length = 631

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 132/292 (45%), Gaps = 48/292 (16%)

Query: 18  TKGFASTSLKLKEGIT--DIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
             GF S  L   +G++   ++++  L     E+ ++ LI  ++   +++K+ + + T   
Sbjct: 339 KAGFGSGLLSFFQGLSGNKVLTAEDL-AATLEKTKEHLINKNVAADISEKLCDSVRTNLV 397

Query: 76  AKDVSVQRVL-----YDVSELIHKMLMPLSK--------PFNWDFSHRPHVILVVGVNGV 122
            K +     +       + E +  +L P  +            D S RP  I+  GVNGV
Sbjct: 398 GKTMPSFTTITSTVTKSLEEAVTSILSPNRRVDILRDVLAKRQDPSGRPFTIVFCGVNGV 457

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS---------------- 166
           GK+T + K+   +    + +++AA DTFR+ A++QL++     +                
Sbjct: 458 GKSTNLAKICYWLVQNDISILIAACDTFRAGAVEQLRVHTRCLNDLQRSNGKLGPNDPDS 517

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                   G DAAA+A++A    + ++ DV+++DTAGR+ +N  LM  + K+++      
Sbjct: 518 VMLYEKGYGKDAAAIAFDAVNYGRDQRRDVVLVDTAGRMQDNEPLMRSLAKLVKT----- 572

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG 268
            + P  VL V +A  G  A+ Q++ F+                G+++TK D 
Sbjct: 573 -NEPDLVLFVGEALVGNEAVDQLKRFNQSLADFSESTNPHLIDGIVLTKFDT 623


>gi|270489364|ref|ZP_06206438.1| signal peptide binding domain protein [Yersinia pestis KIM D27]
 gi|270337868|gb|EFA48645.1| signal peptide binding domain protein [Yersinia pestis KIM D27]
          Length = 282

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 6/134 (4%)

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
              A +QA+ K  DVLI+DTAGRLH +  +M  I ++   +K      P   L V+DA T
Sbjct: 1   MNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMT 54

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+A    + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE  + LEPF
Sbjct: 55  GQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKSDALEPF 114

Query: 302 VAKDFSAVITGCLD 315
                ++ I G  D
Sbjct: 115 HPDRIASRILGMGD 128


>gi|15895415|ref|NP_348764.1| flagellar biosynthesis regulator FlhF [Clostridium acetobutylicum
           ATCC 824]
 gi|15025138|gb|AAK80104.1|AE007715_9 Flagellar GTP-binding protein, FlhF [Clostridium acetobutylicum
           ATCC 824]
 gi|325509561|gb|ADZ21197.1| flagellar biosynthesis regulator FlhF [Clostridium acetobutylicum
           EA 2018]
          Length = 389

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 123/285 (43%), Gaps = 26/285 (9%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           + +   ISS   D   + E+E  L  +DI     ++IV+ ++  +   D+++        
Sbjct: 124 KKLIGNISSSNADQEEKSEIELKLEEADINEGYIKEIVKNIMDDKSDIDLNL-------- 175

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGD 148
               K+   L K      +    +I  VG  GVGKTT I KL+ K S     KV L   D
Sbjct: 176 ----KLKSALEKNIEISKTEEKGIITFVGPTGVGKTTTIAKLAGKFSLIEKKKVGLITVD 231

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R  A++QL+ +AD  +  F              EA K  Q    D++++DT GR   N
Sbjct: 232 TYRIGAVEQLRTYADIMNLPFKV----VLTLKEMDEAIKSMQ--NCDIILVDTTGRSSKN 285

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
            + ++ +   +     L+      +  V+ ATT    L  +   +       +I+TK+D 
Sbjct: 286 KMQISELRAFVSKTNSLN------INLVISATTKNRDLEAIIDGYRQLDFQNVIITKLDE 339

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           T   G +I I+     P+ ++  G+ + +D+      +  +++ G
Sbjct: 340 TTTYGSIINILNYAHKPLSYVTTGQNVPDDIRRMAKGEIVSLVLG 384


>gi|319427056|gb|ADV55130.1| flagellar biosynthetic protein FlhF [Shewanella putrefaciens 200]
          Length = 460

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 127/323 (39%), Gaps = 25/323 (7%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
              +   +  + I  +    AS    L   ++ +++  ++  D V   LE  L+ ++   
Sbjct: 143 KKPQTTQKQNADIEAMRDELASLRNLLTHQVSSLMTEHKKRTDPVGAMLESKLLEAEFSP 202

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           AVA K+         ++  +   ++  + + +  ML         D   +  V+ +VG  
Sbjct: 203 AVAAKL------AALSQHYTPAELVRALPQSLANMLDNQGD----DIVRQGGVVALVGPT 252

Query: 121 GVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +   ++ 
Sbjct: 253 GVGKTTSLAKLAARFAAHHGPEQVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLNEL 312

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             + Y+       +   +++IDTAG    +  L   +  +       +   P     VL 
Sbjct: 313 EQILYQ------FRNRKLVLIDTAGMGQRDMRLYQQLDNL-----TANSRIPIRSYLVLS 361

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-D 297
           AT  +  L+           +G ++TK+D +    G + +++   +P+ ++  G+ +  D
Sbjct: 362 ATGQRRVLQDAVNHFKRIPLSGAVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQRVPED 421

Query: 298 LEPFVAKDFSAVITGCLDYGEEK 320
           ++       +      LD  E++
Sbjct: 422 MKVADTLMLAQQALATLDSTEQQ 444


>gi|150019064|ref|YP_001311318.1| flagellar biosynthesis regulator FlhF [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905529|gb|ABR36362.1| GTP-binding signal recognition particle SRP54, G- domain
           [Clostridium beijerinckii NCIMB 8052]
          Length = 446

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 133/289 (46%), Gaps = 26/289 (8%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
            +LK  +  +I +   +D     L++ L   DI   +  +++E ++     KD+     L
Sbjct: 177 NELKSLLNKVIKNSSNEDVSVSFLKERLKNLDIDEGLQDEVMESIVN--IGKDLDEIESL 234

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVML 144
            +V E    +L+          S R   +++VG  GVGKTT I KL+ +++     KV L
Sbjct: 235 REVFE--RDILVS-----TKSLSGR---VVLVGPTGVGKTTTIAKLAGRLALIEKKKVGL 284

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
              DT+R  AI+QLK +A+  +  F       +      +A ++      DV++IDT GR
Sbjct: 285 ITVDTYRIGAIEQLKTYAEIMNIPFKVVITMKEME----DAIEEM--NNCDVVLIDTTGR 338

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
              N++ ++ +   ++         P  V  V+ ATT  + ++ +   ++      +I+T
Sbjct: 339 SSKNAMQISELRAFVQ------KANPDHVNMVISATTKNSDIKSILSGYSELEYDNIIIT 392

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           K+D T   G L  I      PV F+ +G+ + +D+     ++ ++ I G
Sbjct: 393 KLDETTVYGSLYNIAKIANKPVSFITIGQNVPDDIMVPTKEEVASFILG 441


>gi|183230399|ref|XP_001913435.1| signal recognition particle 54 kDa protein [Entamoeba histolytica
           HM-1:IMSS]
 gi|169802916|gb|EDS89786.1| signal recognition particle 54 kDa protein, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 259

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 14/229 (6%)

Query: 36  ISSRRLDDGV----REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SE 90
            SS  +D+ V     +E+E  L+  D+     +++V  +  K  ++D+        +  +
Sbjct: 2   TSSTVVDEEVINTLLKEIETSLLGEDVNPIFIRQMVNNIKKKINSEDIPDGIDKRKLIKD 61

Query: 91  LIHKMLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
            + + L+ L  P    F  +     V+++VG+ G GKTT I KL+    + G K  +   
Sbjct: 62  SVFEELINLVDPKTEAFKPKKGKTCVLMMVGLQGAGKTTTITKLALYYKNRGYKPAVVGA 121

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTFR+ A +QL++ A R    F   +  SD   +A E  +  + +K D++++DT+GR   
Sbjct: 122 DTFRAGAYEQLQMNAKRAGVPFFGIKEESDPVKVASEGVRTFRKEKNDIILVDTSGRHKQ 181

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +  L   +  +   +K      P S++ V+D   GQ A  Q + F    
Sbjct: 182 DKELFKEMQSVRDAIK------PDSIIFVMDGAIGQAAFGQAKAFKDAV 224


>gi|153001437|ref|YP_001367118.1| flagellar biosynthesis regulator FlhF [Shewanella baltica OS185]
 gi|304409944|ref|ZP_07391563.1| flagellar biosynthetic protein FlhF [Shewanella baltica OS183]
 gi|307302343|ref|ZP_07582101.1| flagellar biosynthetic protein FlhF [Shewanella baltica BA175]
 gi|151366055|gb|ABS09055.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Shewanella baltica OS185]
 gi|304351353|gb|EFM15752.1| flagellar biosynthetic protein FlhF [Shewanella baltica OS183]
 gi|306914381|gb|EFN44802.1| flagellar biosynthetic protein FlhF [Shewanella baltica BA175]
          Length = 460

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 131/324 (40%), Gaps = 27/324 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIG 59
              + + +  + I  +    AS    L   ++ +++   +R+D  V   LE  L+ ++  
Sbjct: 143 KKPQTSQKQSADIEAMRDELASLRNLLTHQVSSLMTEHKKRIDP-VGAMLEAKLLEAEFS 201

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            AVA K+         ++  +   ++  + + +  ML         D   +  V+ +VG 
Sbjct: 202 PAVANKL------AALSQHYTPAELVRALPQSLANMLDNQGD----DIVKQGGVVALVGP 251

Query: 120 NGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ + +       V L   D +R  A +QL  +          +   ++
Sbjct: 252 TGVGKTTSLAKLAARFAAHHGAEHVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLNE 311

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              + Y+       +   +++IDTAG    +  L   +  +       +   P     VL
Sbjct: 312 LEQILYQ------FRNRKLVLIDTAGMGQRDMRLYQQLDNL-----TANSRIPIRSYLVL 360

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L+           +G+++TK+D +    G + +++ + +P+ ++  G+ +  
Sbjct: 361 SATGQRRVLQDAVNHFKRIPLSGVVLTKLDESVSLAGALSVLIQNGLPLSYVTDGQRVPE 420

Query: 297 DLEPFVAKDFSAVITGCLDYGEEK 320
           D++     D +      LD  E++
Sbjct: 421 DMKVADTLDLAQQALAALDSTEQQ 444


>gi|160876162|ref|YP_001555478.1| flagellar biosynthesis regulator FlhF [Shewanella baltica OS195]
 gi|217972631|ref|YP_002357382.1| flagellar biosynthesis regulator FlhF [Shewanella baltica OS223]
 gi|160861684|gb|ABX50218.1| GTP-binding signal recognition particle SRP54 G- domain [Shewanella
           baltica OS195]
 gi|217497766|gb|ACK45959.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Shewanella baltica OS223]
 gi|315268358|gb|ADT95211.1| flagellar biosynthetic protein FlhF [Shewanella baltica OS678]
          Length = 460

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 131/324 (40%), Gaps = 27/324 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIG 59
              + + +  + I  +    AS    L   ++ +++   +R+D  V   LE  L+ ++  
Sbjct: 143 KKPQTSQKQSADIEAMRDELASLRNLLTHQVSSLMTEHKKRIDP-VGAMLEAKLLEAEFS 201

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            AVA K+         ++  +   ++  + + +  ML         D   +  V+ +VG 
Sbjct: 202 PAVANKL------AALSQHYTPAELVRALPQSLANMLDNQGD----DIVKQGGVVALVGP 251

Query: 120 NGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ + +       V L   D +R  A +QL  +          +   ++
Sbjct: 252 TGVGKTTSLAKLAARFAAHHGAEHVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLNE 311

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              + Y+       +   +++IDTAG    +  L   +  +       +   P     VL
Sbjct: 312 LEQILYQ------FRNRKLVLIDTAGMGQRDMRLYQQLDNL-----TANSRIPIRSYLVL 360

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L+           +G+++TK+D +    G + +++ + +P+ ++  G+ +  
Sbjct: 361 SATGQRRVLQDAVNHFKRIPLSGVVLTKLDESVSLAGALSVLIQNGLPLSYVTDGQRVPE 420

Query: 297 DLEPFVAKDFSAVITGCLDYGEEK 320
           D++     D +      LD  E++
Sbjct: 421 DMKVADTLDLAQQALAALDSTEQQ 444


>gi|297530586|ref|YP_003671861.1| flagellar biosynthetic protein FlhF [Geobacillus sp. C56-T3]
 gi|297253838|gb|ADI27284.1| flagellar biosynthetic protein FlhF [Geobacillus sp. C56-T3]
          Length = 390

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 116/272 (42%), Gaps = 25/272 (9%)

Query: 48  ELEDLLI---RSDIGVAVAQKIVEELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKP 102
           E E  L+    +D+     +++++ LL + YA     S   V     E +  +L  L  P
Sbjct: 133 EAERRLVRQGMADV---YVRQVMDRLLERWYADKDGRSPAAVSAWTKEAVRDLLSTL--P 187

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIW 161
           F      + ++IL+ G  GVGKTT + K++ +   + G KV     DT+R AAIDQLK +
Sbjct: 188 FVKTAEQKKYMILL-GPTGVGKTTTLAKMAGRAVLEQGKKVGFITADTYRIAAIDQLKTY 246

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           AD   A         D          + +    D++ +DTAGR   N   +  + + +  
Sbjct: 247 ADILHAPLEVCYNADDFRT------AKRKLAGCDLVFVDTAGRNFRNPQYVDELQQTLEF 300

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                  +      V  AT   + ++ +    +      LI+TK+D T   G ++ +++ 
Sbjct: 301 ------DSETETFLVFAATGKYDDMKTIYNHFSRLPIDRLIVTKLDETDSFGTIVNVLLD 354

Query: 282 HKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
            ++   +   G+ + +D+    A     ++ G
Sbjct: 355 SRLAAAYFTNGQNVPDDMVEASADRLVHLLFG 386


>gi|212634382|ref|YP_002310907.1| flagellar biosynthesis regulator FlhF [Shewanella piezotolerans
           WP3]
 gi|212555866|gb|ACJ28320.1| GTP-binding signal recognition particle SRP54, G-domain protein
           [Shewanella piezotolerans WP3]
          Length = 455

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/306 (18%), Positives = 119/306 (38%), Gaps = 25/306 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           + +  AS    L   ++ ++S  ++  D V   LE  L+ ++   AVA+K+         
Sbjct: 153 MKEELASIRSLLTHQVSTLMSEQKKRVDPVGAMLESKLLEAEFSPAVAKKL--------- 203

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             ++S      ++   + + L  +      D   +  V+  VG  GVGKTT + KL+ + 
Sbjct: 204 -SNLSEHYSPAELVASLPRSLANMLDNQGDDIVRQGGVVAFVGPTGVGKTTTVAKLAARF 262

Query: 136 S--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +      +V L   D +R  A +QL  +          +   ++   + Y+       + 
Sbjct: 263 AAHHGSDQVALITTDHYRIGAFEQLATYGKIMGCPVKQAHDFNELEQILYQ------FRN 316

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
             +++IDTAG    +  L   +  +       +   P     V+ AT  +  L       
Sbjct: 317 RKLVLIDTAGMGQRDLRLFQQLDNL-----TANSAIPIRSYLVMSATGQRRVLEDAVKQF 371

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITG 312
                +G ++TK+D +      + +++   +P+ ++  G+ +  D++       +     
Sbjct: 372 TRIPLSGAVLTKLDESVSLAPALSVLIQSGLPLSYVTDGQRVPEDMQVADTLALANRALA 431

Query: 313 CLDYGE 318
            LD  E
Sbjct: 432 VLDNQE 437


>gi|323490159|ref|ZP_08095379.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Planococcus donghaensis MPA1U2]
 gi|323396207|gb|EGA89033.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Planococcus donghaensis MPA1U2]
          Length = 369

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 125/275 (45%), Gaps = 19/275 (6%)

Query: 43  DGVREEL---EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           + + +EL   ++ L + ++   V +K++E+L+T+  ++        + V+    K++  +
Sbjct: 104 ESLPKELQVVKERLTQQEVSADVQEKLIEKLMTRDESETAPATENTWQVARE--KLISMI 161

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQL 158
            +      +  P +   +G  GVGKTT I K++     ++  KV L   DT+R AA++QL
Sbjct: 162 VENQTHSTAENPRITCFIGPTGVGKTTTIAKIAASHTLNSDKKVGLITADTYRIAAVEQL 221

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K +    +      E  +D       A +  +    D+++IDTAGR +  +  +  +  +
Sbjct: 222 KTYGGILNIPVQVIESSADLTK----AIEDFED--CDIILIDTAGRNYQQTEYVEELKNL 275

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +         +   V  VL  T     ++++        T  L++TK D T   G ++ +
Sbjct: 276 LPA------DSNVQVHLVLSLTAKYEDMKRIIDNFQSISTNELLLTKKDETGSSGAILNL 329

Query: 279 VVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           +  + IP+ ++  G+ + +DL     +  +  + G
Sbjct: 330 ICHYDIPIRYIANGQNVPDDLLALTPELVADFVMG 364


>gi|119775417|ref|YP_928157.1| flagellar biosynthesis regulator FlhF [Shewanella amazonensis SB2B]
 gi|119767917|gb|ABM00488.1| flagellar biosynthetic protein FlhF [Shewanella amazonensis SB2B]
          Length = 463

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 114/284 (40%), Gaps = 24/284 (8%)

Query: 17  LTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           + +  AS    L   ++ ++   +   D V   LE  L+ ++   AVA K+         
Sbjct: 161 MKEELASLRNLLTHQVSSLMMEQKNRTDPVGAMLETRLLEAEFSPAVAAKL--------- 211

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              +S      ++ + + + L  +      D   R  V+  VG  GVGKTT I K++ + 
Sbjct: 212 -AGLSQHYNPAELVKALPQSLANMLDNQGDDIVRRGGVVAFVGPTGVGKTTSIAKIAARF 270

Query: 136 S--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +      +V L   D +R  A +QL  +          +   ++   + Y+       + 
Sbjct: 271 AAHHGADQVALITTDHYRIGAFEQLATYGKIMGCPVKQAHDLNELQQILYQ------LRN 324

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
             +++IDTAG    +  L+  +  +       +   P     VL AT+ +  L+      
Sbjct: 325 RKLVLIDTAGMGQRDMRLVEQLDNL-----TANSALPIRSYLVLSATSQRRVLQDAVKHF 379

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                +G ++TK+D +    G + +++   +P+ ++  G+ + +
Sbjct: 380 QRIPLSGAVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQRVPE 423


>gi|308535387|ref|YP_002140554.2| flagellar biogenesis protein FlhF [Geobacter bemidjiensis Bem]
 gi|308052732|gb|ACH40758.2| flagellar biogenesis protein FlhF [Geobacter bemidjiensis Bem]
          Length = 484

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 107/259 (41%), Gaps = 21/259 (8%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PHVI 114
           D+G    + ++E +              + ++  L+ + L  + K        +  P ++
Sbjct: 238 DVGPEAIELLMEAIRPAARG-----GAGIGELRNLMAEALAGMIKCSGSLRIKKTGPRIV 292

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            VVG  GVGKTT I K++   +      V +   D FR  A++QLK +A         + 
Sbjct: 293 AVVGPTGVGKTTTIAKIAALYALNRRVSVAMVTMDNFRVGAVEQLKTYAKIMDLPLEVAG 352

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              +           A+    D+++IDTAGR   ++  +  +   +     +D      V
Sbjct: 353 NSQELGK------ALARHSDKDLIMIDTAGRSPKDTERLDELKGYLEAHNGID------V 400

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
              L ATT    + ++         T L+ TK+D +   G ++   + HK+P+ +   G+
Sbjct: 401 YLCLSATTRTREIDEIIATFGTLPITKLLFTKLDESRSLGCIVDTYLKHKVPLSYFSTGQ 460

Query: 294 GIN-DLEPFVAKDFSAVIT 311
            +  D+E   ++  ++++ 
Sbjct: 461 KVPEDIEVASSRKLASLVV 479


>gi|261407963|ref|YP_003244204.1| flagellar biosynthetic protein FlhF [Paenibacillus sp. Y412MC10]
 gi|261284426|gb|ACX66397.1| flagellar biosynthetic protein FlhF [Paenibacillus sp. Y412MC10]
          Length = 479

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 132/317 (41%), Gaps = 29/317 (9%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDI------ISSRRLDDGVREE----LEDLLIRSDI 58
           +  S   +L  G + +  ++ E + ++      +S + L+     E    + D L++ D+
Sbjct: 175 QEESLSSRL--GISESEQRVLEELKEMKEWIARLSRQNLEAQHLPEPLHVIRDQLLKQDL 232

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVV 117
              +A++ +        A    +Q    ++  +I+K     L             ++ V 
Sbjct: 233 SAKLAEEWLAAAEDAWKAS--QMQMSETELLNVIYKQAEAFLEGRIGDGVQPGTRIVYVA 290

Query: 118 GVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           G  GVGKTT I K++  ++     KV     DT+R +A++QL+ +A   +      +   
Sbjct: 291 GPTGVGKTTTIAKIAAEQLFRNQRKVGFITSDTYRISAVEQLRTYASILNVPMEVVQSPG 350

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D       A ++ Q    D++++DTAGR + N +L++ +  +                 V
Sbjct: 351 D----MQRALQKLQD--CDLVLMDTAGRNYRNELLVSELQSL------FSHSDQSETYLV 398

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI- 295
           L  T+  + + ++    +      +I TKMD T   G L  ++  H + + ++  G+ + 
Sbjct: 399 LSLTSKSSDMIEIADHFSKYELDKVIFTKMDETGSYGALFNLIDAHNLRLSYMTNGQNVP 458

Query: 296 NDLEPFVAKDFSAVITG 312
           +DL     +    ++ G
Sbjct: 459 DDLLMADPERLCHLLLG 475


>gi|126175113|ref|YP_001051262.1| flagellar biosynthesis regulator FlhF [Shewanella baltica OS155]
 gi|125998318|gb|ABN62393.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella baltica OS155]
          Length = 460

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 131/324 (40%), Gaps = 27/324 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIG 59
              + + +  + I  +    AS    L   ++ +++   +R+D  V   LE  L+ ++  
Sbjct: 143 KKPQTSQKQGADIEAMRDELASLRNLLTHQVSSLMTEHKKRIDP-VGAMLEAKLLEAEFS 201

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            AVA K+         ++  +   ++  + + +  ML         D   +  V+ +VG 
Sbjct: 202 PAVANKL------AALSQHYTPAELVRALPQSLANMLDNQGD----DIVKQGGVVALVGP 251

Query: 120 NGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ + +       V L   D +R  A +QL  +          +   ++
Sbjct: 252 TGVGKTTSLAKLAARFAAHHGAEHVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLNE 311

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              + Y+       +   +++IDTAG    +  L   +  +       +   P     VL
Sbjct: 312 LEQILYQ------FRNRKLVLIDTAGMGQRDMRLYQQLDNL-----TANSRIPIRSYLVL 360

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L+           +G+++TK+D +    G + +++ + +P+ ++  G+ +  
Sbjct: 361 SATGQRRVLQDAVNHFKRIPLSGVVLTKLDESVSLAGALSVLIQNGLPLSYVTDGQRVPE 420

Query: 297 DLEPFVAKDFSAVITGCLDYGEEK 320
           D++     D +      LD  E++
Sbjct: 421 DMKVADTLDLAQQALAALDSTEQQ 444


>gi|293604996|ref|ZP_06687392.1| GTP-binding signal recognition particle SRP54 [Achromobacter
           piechaudii ATCC 43553]
 gi|292816601|gb|EFF75686.1| GTP-binding signal recognition particle SRP54 [Achromobacter
           piechaudii ATCC 43553]
          Length = 1117

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 115/306 (37%), Gaps = 29/306 (9%)

Query: 17  LTKGFASTSLKLKEGITDIISSRR---LDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           L    ++    L+  +  ++   R     +     L   L+ +     + + +V+ L   
Sbjct: 420 LQDAISALRGALETRMDGLLWGGRPGTTREAAAAALFRSLLDAGFSTKLVRALVDRL--- 476

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              + +S           +   L  ++    +       V  +VG  GVGKTT + KL+ 
Sbjct: 477 --PQGLSADAAQAWARNELVTHLPVVASEDEFLAGG---VYALVGPTGVGKTTTLAKLAA 531

Query: 134 K--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +    +   +V +   D FR  A++QL+I+              ++   +       A+ 
Sbjct: 532 RCVAREGRDQVAMLTTDLFRIGALEQLQIYGRLMGVPAHSVRDAAELRRIL------AEL 585

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
               +++IDT G    + ++      +    K      P   L VL+A +  + L +V  
Sbjct: 586 GNRKIVLIDTTGISQRDRLVAEQAAMLCNAGK------PVRRLLVLNAASQGDTLDEVAH 639

Query: 252 FHAV---AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDFS 307
            +         G I+TK+D   R G  +   + H++P++++ VG+ + + +E   A    
Sbjct: 640 AYRNGVGEDVAGCIITKLDEATRLGAALDTAIRHRLPIHYMSVGQKVPEHMELARADTLI 699

Query: 308 AVITGC 313
               G 
Sbjct: 700 DRAFGM 705


>gi|120598265|ref|YP_962839.1| flagellar biosynthesis regulator FlhF [Shewanella sp. W3-18-1]
 gi|120558358|gb|ABM24285.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella sp. W3-18-1]
          Length = 460

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 128/324 (39%), Gaps = 27/324 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIG 59
              +   +  + I  +    AS    L   ++ +++   +R+D  V   LE  L+ ++  
Sbjct: 143 KKPQTTQKQNADIEAMRDELASLRNLLTHQVSSLMTEHKKRIDP-VGAMLESKLLEAEFS 201

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            AVA K+         ++  +   ++  + + +  ML         D   +  V+ +VG 
Sbjct: 202 PAVAAKL------AALSQHYTPAELVRALPQSLANMLDNQGD----DIVRQGGVVALVGP 251

Query: 120 NGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +   ++
Sbjct: 252 TGVGKTTSLAKLAARFAAHHGPEQVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLNE 311

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              + Y+       +   +++IDTAG    +  L   +  +       +   P     VL
Sbjct: 312 LEQILYQ------FRNRKLVLIDTAGMGQRDMRLYQQLDNL-----TANSRIPIRSYLVL 360

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L+           +G ++TK+D +    G + +++   +P+ ++  G+ +  
Sbjct: 361 SATGQRRVLQDAVNHFKRIPLSGAVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQRVPE 420

Query: 297 DLEPFVAKDFSAVITGCLDYGEEK 320
           D++       +      LD  E++
Sbjct: 421 DMKVADTLMLAQQALATLDSTEQQ 444


>gi|146293657|ref|YP_001184081.1| flagellar biosynthesis regulator FlhF [Shewanella putrefaciens
           CN-32]
 gi|145565347|gb|ABP76282.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella putrefaciens CN-32]
          Length = 460

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 128/324 (39%), Gaps = 27/324 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIG 59
              +   +  + I  +    AS    L   ++ +++   +R+D  V   LE  L+ ++  
Sbjct: 143 KKPQTTQKQNADIEAMRDELASLRNLLTHQVSSLMTEHKKRIDP-VGAMLESKLLEAEFS 201

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            AVA K+         ++  +   ++  + + +  ML         D   +  V+ +VG 
Sbjct: 202 PAVAAKL------AALSQHYTPAELVRALPQSLANMLDNQGD----DIVRQGGVVALVGP 251

Query: 120 NGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +   ++
Sbjct: 252 TGVGKTTSLAKLAARFAAHHGPEQVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLNE 311

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              + Y+       +   +++IDTAG    +  L   +  +       +   P     VL
Sbjct: 312 LEQILYQ------FRNRKLVLIDTAGMGQRDMRLYQQLDNL-----TANSRIPIRSYLVL 360

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L+           +G ++TK+D +    G + +++   +P+ ++  G+ +  
Sbjct: 361 SATGQRRVLQDAVNHFKRIPLSGAVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQRVPE 420

Query: 297 DLEPFVAKDFSAVITGCLDYGEEK 320
           D++       +      LD  E++
Sbjct: 421 DMKVADTLMLAQQALATLDSTEQQ 444


>gi|251778674|ref|ZP_04821594.1| flagellar biosynthesis protein FlhF [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082989|gb|EES48879.1| flagellar biosynthesis protein FlhF [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 403

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 131/299 (43%), Gaps = 26/299 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVR-EELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +         ++KE +  +I +   D+  + +++++ LI  D+     ++  EE+L+K  
Sbjct: 123 IKDSMHKEVSEMKELLNRVIENTSKDEIKKIDKIQEKLIEIDVD----EQFHEEILSKIN 178

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             D        D  E++ K+   +    + D S +   I +VG  GVGKTT I KL+ K+
Sbjct: 179 NTDDEN----IDKYEVLRKIFEDVFLECSKDISGK---IALVGPTGVGKTTTIAKLAGKL 231

Query: 136 SDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           S    K +     DT+R  AI+QLK +A+  +  F    I       A  A         
Sbjct: 232 SLIDKKRVGLITVDTYRIGAIEQLKTYAEIMNIPF-KVVITIKEMEEAINAM-----NDC 285

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV++IDT GR   N++ ++ +   +          P  V  V+ ATT    +  +   ++
Sbjct: 286 DVILIDTTGRSSKNTMQISELRAFVE------KANPDYVSMVISATTKNRDIVSILNGYS 339

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITG 312
                 +I+TK+D T   G L  I+     PV ++  G+ +  D+     ++ +  + G
Sbjct: 340 DLSYDNVIITKLDETTVYGSLYNIMKISNKPVKYITTGQNVPNDIIVPSKEEMARFMLG 398


>gi|126697836|ref|YP_001086733.1| flagellar biosynthesis regulator FlhF [Clostridium difficile 630]
 gi|115249273|emb|CAJ67086.1| Flagellar biosynthesis regulator FlhF (Flagella-associated
           GTP-binding protein) [Clostridium difficile]
          Length = 338

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 128/288 (44%), Gaps = 28/288 (9%)

Query: 30  EGITDIISSRRLD---DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
           E +  II++   D   D   +++   L+     + + ++IVE +         +      
Sbjct: 70  EQLKSIINNMGFDNKNDNDIDKICKNLL----SLELNEEIVESIRIDLQEMKFNGIDTSK 125

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLA 145
           ++ E++ K +   ++  N         I +VG  GVGKTT I KL+ K+      KV + 
Sbjct: 126 NLVEILKKKIKIENQVINGK-------IALVGPPGVGKTTTIAKLAAKLVFEENKKVGVI 178

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             DT+R  A++QLKI+ D  +  F    I  D   LA +  K       DV++IDT GR 
Sbjct: 179 TIDTYRIGAVEQLKIYTDIMNIPF-KGVISPDEMELALDEMK-----DCDVVLIDTTGRG 232

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
           + NS+ +  I  +I      D     ++  VL+ TT ++  + +   +       LI+TK
Sbjct: 233 YKNSMQILEIKNLI------DKAETDNIHLVLNCTTRESDTKAIIDSYRNVNFKSLIITK 286

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           +D T   G +  I+   + P+ ++  G+ + +D+          ++ G
Sbjct: 287 LDETITYGSIFNIMNYAQKPISYITTGQNVPDDIIKPNEDKIIRLLLG 334


>gi|77165622|ref|YP_344147.1| flagellar biosynthesis regulator FlhF [Nitrosococcus oceani ATCC
           19707]
 gi|254434668|ref|ZP_05048176.1| SRP54-type protein, GTPase domain [Nitrosococcus oceani AFC27]
 gi|76883936|gb|ABA58617.1| GTP-binding signal recognition particle SRP54 [Nitrosococcus oceani
           ATCC 19707]
 gi|207091001|gb|EDZ68272.1| SRP54-type protein, GTPase domain [Nitrosococcus oceani AFC27]
          Length = 393

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 112/299 (37%), Gaps = 28/299 (9%)

Query: 30  EGITDIISSRRLDDGVREEL------EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           + + +++   +L D    E+      +  L+R  +G+ +A  + ++L  +   +    Q 
Sbjct: 93  KNLRNLV-ETQLSDLAWGEIGRRNPSKAQLLRRLMGLDLASDLCQQLAAQVNNEGAPHQI 151

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLK 141
               +       L  L    N D      +I +VG  GVGKTT + KL+ + +       
Sbjct: 152 WQQALKG-----LTDLIPIANDDILSDGGIIALVGPTGVGKTTSVAKLAARFALCHGLHS 206

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V L   D FR  A +QL  +          +           E  +    ++  +++IDT
Sbjct: 207 VALVTTDCFRIGAQEQLHTYGRILGIPVKVARDQQTLQ----ETLEYLADRR--LVLIDT 260

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AG    +  L      +                 VL A T  + L +V          G 
Sbjct: 261 AGMSQRDMHLTEQFTMLAE------GTLEIRNYLVLSAATQFSVLDEVVRKFNRIDLAGC 314

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320
           I+TK+D  A  GG++   + H +P+ ++  G+ +   E F       ++    +Y  E+
Sbjct: 315 ILTKLDEAASLGGMVSAAIRHHLPLAYVCDGQRVP--EDFSPARAQNIVHLLSEYAHEQ 371


>gi|300113618|ref|YP_003760193.1| flagellar biosynthetic protein FlhF [Nitrosococcus watsonii C-113]
 gi|299539555|gb|ADJ27872.1| flagellar biosynthetic protein FlhF [Nitrosococcus watsonii C-113]
          Length = 393

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 116/300 (38%), Gaps = 30/300 (10%)

Query: 30  EGITDIISSRRLDDGVREEL------EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           + + +++   +L D    E+      +  L+R  + + +A  + ++L+ +   +    Q 
Sbjct: 93  KNLRNLV-ETQLSDLAWGEMGRRNPSKAQLLRRLMNLDLASDLCQQLVAQVNNEGAPHQI 151

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLK 141
               +       L  L    N D      +I +VG  GVGKTT + KL+ + +       
Sbjct: 152 WQQALKG-----LTDLIPIANDDILSDGGIIALVGPTGVGKTTSVAKLAARFALCHGLHS 206

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V L   D FR  A +QL  +          +           E  +    ++  +++IDT
Sbjct: 207 VALVTTDCFRIGAQEQLHTYGRILGIPVKVAHDRQTLQ----ETLEYLADRR--LVLIDT 260

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           AG    +  L      +                 VL A T  + L +V          G 
Sbjct: 261 AGMSQRDMHLTEQFSML------AGGTLAIRNYLVLSAATQFSVLDEVVRKFNRIDLAGC 314

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLDYGEEK 320
           I+TK+D  A  GG++   + H +P+ ++  G+ +  D  P  A++   +++   +Y  EK
Sbjct: 315 ILTKLDEAASLGGMVSTAIRHHLPLAYVCNGQRVPEDFAPACAQNVVHLLS---EYAHEK 371


>gi|307264888|ref|ZP_07546450.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920146|gb|EFN50358.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 341

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 118/299 (39%), Gaps = 38/299 (12%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLK-LKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           +  + +    ++ ++ L K  A+     + E     + S+ +D G+  E+  LL      
Sbjct: 61  IPKESITKNDINELKNLIKTIATNKNGTVTEAKEKTLVSKLIDYGIEREVSQLL------ 114

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
                             D    + +  + E I   + P  K  N + S +   IL +G 
Sbjct: 115 --------------GEGIDEFDNKGIKILKERIEAFMGPPQK-LNTEKSKK---ILFIGP 156

Query: 120 NGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
            GVGKTT I K++   + + G  +ML   D FR AA+DQLK + +             D 
Sbjct: 157 TGVGKTTTIAKIASNLILNEGKNIMLVTADIFRIAAVDQLKTYGEILGVPVKVVNNIFDL 216

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             L      Q + +K D ++IDTAGR H +   +  +   I+                L 
Sbjct: 217 HKL------QPELEKYDAVLIDTAGRSHKDEKRINELKTFIKYAN------CDETYLCLS 264

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           ATT    L++V   +  AG   LI TK+D T     ++  V     P+ +   G+ + D
Sbjct: 265 ATTKSEDLKEVIKRYEFAGDYKLIFTKLDETDNYSSILNAVYYSGRPISYFTNGQIVPD 323


>gi|294140218|ref|YP_003556196.1| flagellar biosynthetic protein FlhF [Shewanella violacea DSS12]
 gi|293326687|dbj|BAJ01418.1| flagellar biosynthetic protein FlhF [Shewanella violacea DSS12]
          Length = 464

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 120/303 (39%), Gaps = 25/303 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           + +  AS    L   +T ++S ++   D V   LE  L+ ++   AV++K+ E       
Sbjct: 164 MREELASLRSLLTHQVTALMSEQKSRVDPVGAMLESKLLDAEFSPAVSKKLSE------- 216

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              +S      D+   + + L  +      D   +  V+  VG  GVGKTT + KL+ + 
Sbjct: 217 ---LSEHYTPADLVRALPRSLANMLDNQGDDIVRQGGVVAFVGPTGVGKTTTLAKLAARY 273

Query: 136 S--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +       V L   D +R  A +QL  +          +   ++   + Y+       + 
Sbjct: 274 AAHHGAEHVALITTDHYRIGAFEQLATYGKIMGCPVKQAHDLNELEQILYQ------FRN 327

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
             +++IDTAG    +  L   +  +       +   P     VL +T  +  L +     
Sbjct: 328 RKLVLIDTAGMGQRDMRLFQQLDNL-----AANSRLPIRSYLVLSSTGQRRVLEEAVTQF 382

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITG 312
           +    +G I+TK+D +      + +++   +P+ ++  G+ +  D++     + +     
Sbjct: 383 SRIPLSGAILTKLDESVSLAPALSVLIQSGLPLSYVTDGQRVPEDMKVADTFELANKALS 442

Query: 313 CLD 315
            LD
Sbjct: 443 VLD 445


>gi|329929326|ref|ZP_08283079.1| flagellar biosynthesis protein FlhF [Paenibacillus sp. HGF5]
 gi|328936695|gb|EGG33138.1| flagellar biosynthesis protein FlhF [Paenibacillus sp. HGF5]
          Length = 479

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 132/317 (41%), Gaps = 29/317 (9%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDI------ISSRRLDDGVREE----LEDLLIRSDI 58
           +  S   +L  G + +  ++ E + ++      +S + L+     E    + D L++ D+
Sbjct: 175 QEESLSSRL--GISESEQRVLEELKEMKEWIARLSRQNLEAQHLPEPLHVIRDQLLKQDL 232

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVV 117
              +A++ +        A    +Q    ++  +I+K     L             ++ V 
Sbjct: 233 SAKLAEEWLAAAEDAWKAS--QMQMSETELLNVIYKQAEAFLEGRIGDGVQPGTRIVYVA 290

Query: 118 GVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           G  GVGKTT I K++  ++     KV     DT+R +A++QL+ +A   +      +   
Sbjct: 291 GPTGVGKTTTIAKIAAEQLFRNQRKVGFITSDTYRISAVEQLRTYASILNVPMEVVQSPG 350

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D       A ++ Q    D++++DTAGR + N +L++ +  +                 V
Sbjct: 351 D----MQRALQKLQD--CDLVLMDTAGRNYRNELLVSELQSL------FSHSDQSETYLV 398

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI- 295
           L  T+  + + ++    +      +I TKMD T   G L  ++  H + + ++  G+ + 
Sbjct: 399 LSLTSKSSDMIEIADHFSKYELDKVIFTKMDETGSYGALFNLIDAHNLRLSYMTNGQNVP 458

Query: 296 NDLEPFVAKDFSAVITG 312
           +DL     +    ++ G
Sbjct: 459 DDLLMADPERLCHLLLG 475


>gi|326523427|dbj|BAJ88754.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 268

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 126/270 (46%), Gaps = 28/270 (10%)

Query: 64  QKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFN----------WDFSHRPH 112
           +K+ E +      K + S  R+   V   + + L+ +  P                 +P+
Sbjct: 4   RKLCESVAASLEGKKLGSFTRISSTVQTAMEEALLRILTPRRSIDILRDVQAAKERGKPY 63

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V++ VGVNGVGK+T + K++  +    L VM+AA DTFRS A++QL+  A R        
Sbjct: 64  VVVFVGVNGVGKSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFEK 123

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               D A +A EA ++A   K DV+++DTAGR+ +N  LM  + K+I + K      P  
Sbjct: 124 GYEKDPAVVAKEAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINLNK------PDL 177

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVT 281
           VL V +A  G +A+ Q+  F+                G+++TK D    + G  + +V  
Sbjct: 178 VLFVGEALVGNDAVDQLNKFNQKLADLSTVPTARLIDGILLTKFDTIDDKVGAALSMVYI 237

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
              PV F+G G+   DL+    K     + 
Sbjct: 238 SGSPVMFVGCGQSYTDLKKLNVKSIVKTLL 267


>gi|121533741|ref|ZP_01665568.1| GTP-binding signal recognition particle SRP54, G- domain
           [Thermosinus carboxydivorans Nor1]
 gi|121307732|gb|EAX48647.1| GTP-binding signal recognition particle SRP54, G- domain
           [Thermosinus carboxydivorans Nor1]
          Length = 363

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 121/289 (41%), Gaps = 20/289 (6%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
            ++  +  ++S     +     L  LL+++D+   +A+ +V+ L         S      
Sbjct: 89  NMRRLLEQLVSKMPQQEQRLSPLYQLLVKNDVEPDIARNLVQGLPDDNSIIGASQP---- 144

Query: 87  DVSELIHKMLMPLSKPFN--WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVM 143
            V +L+   L    +         +   V+ ++G  GVGKTT I KL+   +   G KV 
Sbjct: 145 IVRQLLFDRLCNYFQKIEGITIPQNGTKVVALIGPTGVGKTTTIAKLAANFALRDGYKVA 204

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L   DT+R AA++QLK +AD             +  A    A  + + K   +++IDTAG
Sbjct: 205 LITADTYRIAAVEQLKTYADIIGIPIEIVYTPDEMKA----ALYRHRDKH--LVLIDTAG 258

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R  NN   +A +  ++ V   +D H       VL  TT      ++    +V      + 
Sbjct: 259 RSPNNQYQLAELQALLSVDPYIDTH------LVLSTTTKYKDALELVKKFSVCSPQKFLF 312

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
           TK+D  +  G ++ ++      + ++  G+ + +D+E         +I 
Sbjct: 313 TKIDEASNLGTVLNLLYQFPTKLSYVTNGQNVPDDIELANPSKLVNLIL 361


>gi|326389462|ref|ZP_08211029.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994467|gb|EGD52892.1| flagellar biosynthetic protein FlhF [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 341

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/273 (26%), Positives = 115/273 (42%), Gaps = 22/273 (8%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
            +LK  I  I  ++   + V E  E  L+   +   + ++ V  LL +    D    + +
Sbjct: 72  NELKNLIKTIAVNKN--EAVTETKEKTLVSRLMDYGIERE-VSHLLGE--GIDELDNKGI 126

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVML 144
             + E I   + P  K  N + S +   IL +G  GVGKTT I K++   + + G  +ML
Sbjct: 127 KILKERIEAFMGPPQK-LNTEKSKK---ILFIGPTGVGKTTTIAKIASNLILNEGKNIML 182

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
              D FR AA+DQLK + +             D   L      Q + +K D ++IDTAGR
Sbjct: 183 VTADIFRIAAVDQLKTYGEILGVPVKVVNNIFDLHKL------QPELEKYDAVLIDTAGR 236

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
            H +   +  +   I+                L ATT    L++V   +  AG   LI T
Sbjct: 237 SHKDEKRINELKTFIKYAN------CDETYLCLSATTKSEDLKEVIKRYEFAGDYKLIFT 290

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           K+D T     ++  V     P+ +   G+ + D
Sbjct: 291 KLDETDNYSSILNAVYYSGRPISYFTNGQIVPD 323


>gi|255305291|ref|ZP_05349463.1| flagellar biosynthesis regulator FlhF [Clostridium difficile ATCC
           43255]
          Length = 338

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 133/311 (42%), Gaps = 39/311 (12%)

Query: 29  KEGITDIISSRRLD-------------DGVREELEDLL-IRSDIGVAV-----AQKIVEE 69
           K GI  I S + ++               ++ E+E L  I +++G          KI + 
Sbjct: 36  KSGIRGIFSKKDIELTIGWEKKDNLEQKDLKREIEQLKSIINNMGFDNKNDNDIDKICKN 95

Query: 70  LLTKRYAKDV------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           LL      ++       +Q + ++  +    ++  L K    +       I +VG  GVG
Sbjct: 96  LLNLELNHEIVEFIKADLQEMKFNGIDTSKNLVESLKKKIKIENQTINGKIALVGPPGVG 155

Query: 124 KTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT I KL+ K+      KV +   DT+R  A++QLKI+ D  +  F    I  D   LA
Sbjct: 156 KTTTIAKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPF-KGVISPDEMELA 214

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +  K       DV++IDT GR + NS+ +  I  +I      D     ++  VL+ TT 
Sbjct: 215 LDEMK-----DCDVVLIDTTGRGYKNSMQILEIKNLI------DKAETDNIHLVLNCTTR 263

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301
           ++  + +   +       LI+TK+D T   G +  I+   + P+ ++  G+ + +D+   
Sbjct: 264 ESDTKAIIDSYRNVNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTGQNVPDDIIKP 323

Query: 302 VAKDFSAVITG 312
                  ++ G
Sbjct: 324 NEDKIIRLLLG 334


>gi|325107976|ref|YP_004269044.1| flagellar biosynthetic protein FlhF [Planctomyces brasiliensis DSM
           5305]
 gi|324968244|gb|ADY59022.1| flagellar biosynthetic protein FlhF [Planctomyces brasiliensis DSM
           5305]
          Length = 437

 Score =  151 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 21/254 (8%)

Query: 63  AQKIVEELLTKRYAKDV--SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           AQ ++E +      +    +  R      E+  ++    S P +     +  ++ +VG  
Sbjct: 193 AQLLIEHVRQGVVEESTLTAEDRWSLICREISDRVRC--SGPISVQPGEQ-KIVALVGPT 249

Query: 121 GVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDA 178
           GVGKTT I KL+        L++ L   DT+R AA++QL+ +A+       V +      
Sbjct: 250 GVGKTTTIAKLASNFRLRDNLRLGLITVDTYRIAAVEQLRTYAEIIDLPMKVVTTPDEMP 309

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            A+A  A        +D+++IDTAGR   + + +  +   +  +             VL 
Sbjct: 310 QAVAELA-------DMDLILIDTAGRSPQDELRIQELKTFLDRIP------VDETHLVLS 356

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-D 297
           ATT Q  LR       V      ++TK+D     G ++ +     +PV +   G+ +  D
Sbjct: 357 ATTSQRNLRLTVETFNVIQPQAAVLTKLDEAPERGAIVTLSAQLGLPVSYFTTGQNVPQD 416

Query: 298 LEPFVAKDFSAVIT 311
           +EP      + ++ 
Sbjct: 417 IEPARLDRAADLLF 430


>gi|163750534|ref|ZP_02157772.1| flagellar biosynthesis protein [Shewanella benthica KT99]
 gi|161329689|gb|EDQ00678.1| flagellar biosynthesis protein [Shewanella benthica KT99]
          Length = 463

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 124/319 (38%), Gaps = 27/319 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIG 59
            + +   ++   +  + +  AS    L   +T ++S    RLD  V   LE  L+ ++  
Sbjct: 148 PSAETKGKASPELEMMREELASLRSLLTHQVTALMSEQKSRLDP-VGAMLESKLLEAEFS 206

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
             +A+K+ E          +S      D+   + + L  +      D   +  V+  VG 
Sbjct: 207 PTLAKKLSE----------LSEHYTPADLVRALPRSLANMLDNQGDDIVRQGGVVAFVGP 256

Query: 120 NGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + K++ + +       V L   D +R  A +QL  +          +   ++
Sbjct: 257 TGVGKTTTLAKIAARYAAHHGVEHVALVTTDHYRIGAFEQLATYGKIMGCPVKQAHDLNE 316

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              + Y+       +   +++IDTAG    ++ L   +  +       +   P     VL
Sbjct: 317 LEQILYQ------FRNRKLVLIDTAGMGQRDTRLFQQLDNL-----AANSRLPIRSYLVL 365

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            +T  +  L +     +    +G I+TK+D +      + +++   +P+ ++  G+ +  
Sbjct: 366 SSTGQRRVLEEAVTQFSRIPLSGAILTKLDESVSLAPALSVLIQSGLPLSYVTDGQRVPE 425

Query: 297 DLEPFVAKDFSAVITGCLD 315
           D++       +      LD
Sbjct: 426 DMQVADTFALANKALSVLD 444


>gi|320354337|ref|YP_004195676.1| flagellar biosynthetic protein FlhF [Desulfobulbus propionicus DSM
           2032]
 gi|320122839|gb|ADW18385.1| flagellar biosynthetic protein FlhF [Desulfobulbus propionicus DSM
           2032]
          Length = 437

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 112/259 (43%), Gaps = 20/259 (7%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            V  +   + + K   + +S   +   +   + ++    ++P     S R   I ++G  
Sbjct: 192 QVVARFTRDTIEKA--RSLSSADLTLILKAAVARLFT--TQPLLDGRSTRQRRISLIGPT 247

Query: 121 GVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           GVGKTT + K++       G ++ L   DT+R AA++Q+K++ +         E+     
Sbjct: 248 GVGKTTTLAKIAAHYLGRFGGRIGLITIDTYRIAAVEQIKVYGEIMRLPV---EVVIKPR 304

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            L  EA  + +   VD+++IDTAGR   N + +  +   +R      P        +L A
Sbjct: 305 EL-EEALDKFRD--VDLVLIDTAGRSPRNGLDIQELAAFLR------PQWGIENNLLLSA 355

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DL 298
            T +  + Q     ++   +  I +K+D   + G L+ I   H  P+ FL  G+ +  DL
Sbjct: 356 ATREREIEQTIKRFSILPISNFIFSKIDECDQLGVLLNIHYKHDTPISFLTNGQRVPEDL 415

Query: 299 EPFVAKDFSAVITGCLDYG 317
                 D + +I    D+G
Sbjct: 416 LMPSPADIADLI--MNDHG 432


>gi|188588736|ref|YP_001920221.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum E3
           str. Alaska E43]
 gi|188499017|gb|ACD52153.1| flagellar biosynthesis protein FlhF [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 403

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 131/299 (43%), Gaps = 26/299 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVR-EELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +         ++KE +  +I +   D+  + +++++ LI  D+     ++  +E+L+K  
Sbjct: 123 IKDSMHKEVSEMKELLNRVIENTSKDEIKKIDKIQEKLIEIDVD----EQFYKEILSKIN 178

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             D        D  E++ K+   +    + D S +   I +VG  GVGKTT I KL+ K+
Sbjct: 179 NTDDEN----IDKYEVLRKIFEDVFLECSKDISGK---IALVGPTGVGKTTTIAKLAGKL 231

Query: 136 SDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           S    K +     DT+R  AI+QLK +A+  +  F    I       A  A         
Sbjct: 232 SLIDKKRVGLITVDTYRIGAIEQLKTYAEIMNIPF-KVVITIKEMEEAINAM-----TDC 285

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV++IDT GR   N++ ++ +   +          P  V  V+ ATT    +  +   ++
Sbjct: 286 DVILIDTTGRSSKNTMQISELRAFVE------KANPDYVSMVISATTKNRDIVSILNGYS 339

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITG 312
                 +I+TK+D T   G L  I+     PV ++  G+ +  D+     ++ +  + G
Sbjct: 340 DLSYDNVIITKLDETTVYGSLYNIMKISNKPVKYITTGQNVPNDIIVPSKEEMARFMLG 398


>gi|187778766|ref|ZP_02995239.1| hypothetical protein CLOSPO_02361 [Clostridium sporogenes ATCC
           15579]
 gi|187772391|gb|EDU36193.1| hypothetical protein CLOSPO_02361 [Clostridium sporogenes ATCC
           15579]
          Length = 408

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 142/316 (44%), Gaps = 26/316 (8%)

Query: 3   NQKVASESLSWIRKLTKG--FASTSLKLKE--GITDIISSRRLDDGVREELEDLLIRSDI 58
            + + S+S S+  KL+KG  F  T   + E   +  I+     ++   E+    L+    
Sbjct: 108 KEILESKSKSFENKLSKGKEFTETKDLMDEIRDLKKIVKDIGKNEKSYEDENSSLVNFFK 167

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            + + ++ +E+++ K           L D  E   K+   +    +   +    V ++VG
Sbjct: 168 DLDLEEEFIEKIIKKV--------GDLEDNLEEREKIKRVIENTIDIRSNSVGKVTVLVG 219

Query: 119 VNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
             GVGKTT I KL+ K+S     KV L   DT+R  A++QLK +AD  +  F        
Sbjct: 220 PTGVGKTTTIAKLAGKLSLIDKKKVGLITIDTYRIGAVEQLKTYADIMNIPF------KV 273

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             ++             DV+++DT GR   N + ++ +   I  +K        SV  V+
Sbjct: 274 VFSIKDMEKSIIDLDYCDVILVDTTGRSSKNMMQISELRAFIEKIKEK------SVHLVI 327

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-N 296
           +A+T    +  +   + +     +I+TK+D T+  G ++ I+   K P+ F+  G+ + +
Sbjct: 328 NASTKNKDIETIIKGYTILEYENIIITKLDETSTYGSILTILDKGKKPISFITTGQDVPD 387

Query: 297 DLEPFVAKDFSAVITG 312
           D++    ++ + ++ G
Sbjct: 388 DIKEGNKEEIAKIVLG 403


>gi|283781324|ref|YP_003372079.1| GTP-binding signal recognition particle SRP54 G-domain-containing
           protein [Pirellula staleyi DSM 6068]
 gi|283439777|gb|ADB18219.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Pirellula staleyi DSM 6068]
          Length = 417

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 125/299 (41%), Gaps = 23/299 (7%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA-VAQKIVEELLTKRYAK 77
                  L L+  +  +    +  D +  +L   L+   + +  VA +++  ++    A 
Sbjct: 129 SRLQDNGLSLEHELATVDFRSKHRDDLLAQLVRELLA--VNLDQVAAEVL--VMQVAAAA 184

Query: 78  DVSVQRVLYDVSELIHKMLM---PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                +    + EL+ + +    P+  P       R  V+ +VG  GVGKTT I KL+ K
Sbjct: 185 TEEAWQNPTKMRELLLRQMECDIPIGGPIRLYSRER-RVVALVGPTGVGKTTTIAKLAAK 243

Query: 135 MS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
              + G +V L   DT+R AA+DQL+ +A              D  A    A ++     
Sbjct: 244 FRLEQGARVGLITVDTYRIAAVDQLQTYATIMQLPLEVVNQPRDMTA----ALERFAD-- 297

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+++IDTAGR   +   +  +  M      LD   P  V  VL +   + AL+      
Sbjct: 298 FDLVLIDTAGRSPRDGARLQELRSM------LDIAQPDEVHLVLASVASREALQSAREAF 351

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
              G T L++TK+D  A    L+P++    IP+ +   G+ +  D+ P   +  +  + 
Sbjct: 352 ERVGATSLVITKLDEAASPASLLPVLRDFAIPLSYTTSGQNVPEDIRPADRRQLARQML 410


>gi|87119468|ref|ZP_01075365.1| flagellar biosynthesis protein FlhF [Marinomonas sp. MED121]
 gi|86164944|gb|EAQ66212.1| flagellar biosynthesis protein FlhF [Marinomonas sp. MED121]
          Length = 427

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 133/317 (41%), Gaps = 36/317 (11%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKL--KEGITDIISSRRLDDG---VREELEDLLIR 55
           +  + +  +  S ++++          L  +  ++DI     LD     V+E L  L + 
Sbjct: 120 LPTENLQIKENSQLKEMEAELQKVKELLEQQRKLSDI-KKNDLDPAQAKVKERLTSLGLS 178

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           S    ++   I++++      ++    RVL  ++E I         P     +       
Sbjct: 179 S----SIVSGILDDV--DLQGREDDWNRVLSHLAEHI---------PVKKQGAEMHGCYA 223

Query: 116 VVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            +G  GVGKTT IGK++ +  +      V+L   DT+R AA +QL+ +    +   V   
Sbjct: 224 FMGPTGVGKTTTIGKIAAQHVLKHGSDSVVLVTTDTYRIAAHEQLRTFGRILNVPVVVVN 283

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             SD   +        +     ++++DTAG    +  L   +  M R    L        
Sbjct: 284 EYSDLNEVLD------KYSNFSLVLVDTAGMNPRDRNLERQLLMMKRAHSSLKK------ 331

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VL  T+ +  L+ V   +A     G +++K+D +A  G  + +V+  ++PV ++  G+
Sbjct: 332 LLVLPCTSQRQVLKTVVDVYAQVQLDGCVLSKLDESASLGEAVSVVIEERLPVVYIADGQ 391

Query: 294 GI-NDLEPFVAKDFSAV 309
            I +D++P  A +  + 
Sbjct: 392 RIPDDIQPARAHNIISR 408


>gi|291519575|emb|CBK74796.1| Flagellar GTP-binding protein [Butyrivibrio fibrisolvens 16/4]
          Length = 283

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/278 (24%), Positives = 117/278 (42%), Gaps = 15/278 (5%)

Query: 41  LDDG---VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
           +D+      + L ++L+ +     V +K + ++L        +   +   +S +  KM++
Sbjct: 13  IDNDNHVFVKMLYNVLLEN----EVQEKYINQVLDDMDKVLQTSHSLDSLLSSVYQKMVL 68

Query: 98  PLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAI 155
            L  P        RP V+  +G  GVGKTT I K++ K   + G KV L   DTFR AA 
Sbjct: 69  KLGTPTKIVPGEKRPKVVFFIGPTGVGKTTTIAKIASKFKVEEGKKVGLITADTFRMAAA 128

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +QL+ +A+             +         +  + + +DV+++DT G  H N       
Sbjct: 129 NQLQTYANILGVPLNVIYSADELLDTVKR--QNREYQDLDVILVDTIGFSHKNQDQKNDT 186

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            K+I  L  +       V  VL ATT Q  L  +   +       LI TK+D T   G L
Sbjct: 187 KKLITALGDIYDS---EVYLVLSATTKQKDLMDIADAYMEFTKFNLIFTKLDETKCLGNL 243

Query: 276 IPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
             +       + ++  G+ + +D+E   A+     + G
Sbjct: 244 FNMKQYTGSSLSYITTGQNVPDDIEIVNAQKLVKQLLG 281


>gi|167623394|ref|YP_001673688.1| flagellar biosynthesis regulator FlhF [Shewanella halifaxensis
           HAW-EB4]
 gi|167353416|gb|ABZ76029.1| GTP-binding signal recognition particle SRP54 G- domain [Shewanella
           halifaxensis HAW-EB4]
          Length = 470

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 123/318 (38%), Gaps = 28/318 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGV 60
           +N++ +S  +     + +  AS    L   ++ + +  ++  D V   LE  L+ ++   
Sbjct: 156 ANKQNSSAEMDA---MKQELASIRSLLTHQVSSLMVEQKKRVDPVGAMLESKLLEAEFSP 212

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           A+A+K+            +S      ++   + + L  +      D   +  V+  VG  
Sbjct: 213 AIAKKL----------SSLSEHYSPAELVASLPRSLANMLDNQGDDIVRQGGVVAFVGPT 262

Query: 121 GVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +   S+ 
Sbjct: 263 GVGKTTTVAKLAARFAAYHGSDQVALITTDHYRIGAFEQLATYGKIMGCPVKQAHDFSEL 322

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             + Y+       +   +++IDTAG    +  L   +  +       +   P     V+ 
Sbjct: 323 EQILYQ------FRNRKLVLIDTAGMGQRDQRLFQQLDSL-----AANSRLPIRSYLVMS 371

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-D 297
           AT  +  L            +G ++TK+D +      + +++   +P+ ++  G+ +  D
Sbjct: 372 ATGQRRVLEDAVKQFTRIPLSGAVLTKLDESISLAPALSVLIQSGLPLSYVTDGQRVPED 431

Query: 298 LEPFVAKDFSAVITGCLD 315
           ++       +      LD
Sbjct: 432 MQVADTLSLANRALAALD 449


>gi|254478874|ref|ZP_05092238.1| SRP54-type protein, GTPase domain [Carboxydibrachium pacificum DSM
           12653]
 gi|214035187|gb|EEB75897.1| SRP54-type protein, GTPase domain [Carboxydibrachium pacificum DSM
           12653]
          Length = 341

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 16/243 (6%)

Query: 59  GVA-VAQKIVEELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           GV  +  K+VE  + K  ++     + ++     E++ K +           S R   +L
Sbjct: 93  GVKSITLKLVEYGIEKELSQLLGEGIDKLDDVGKEVLKKRIKAFLGAPQPLDSERSKKVL 152

Query: 116 VVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
            +G  GVGKTT + K++  +  + G KVML   D FR AA+DQLK + D           
Sbjct: 153 FIGPTGVGKTTTVAKIASHLILNEGKKVMLVTADVFRIAAVDQLKSYGDILGVPVKVVGN 212

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             +   L      Q + +  DV++IDTAGR H +   +  +   I+  +         + 
Sbjct: 213 IFEFHKL------QPEFEDYDVVLIDTAGRSHKDEKRINELKTFIKYAE------CDEIF 260

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
             L ATT    L++V   +  AG   LI TK+D T     ++  V     P+ +   G+ 
Sbjct: 261 LCLSATTRSQDLKEVINRYDFAGNYKLIFTKLDETDNYSSILNAVYYSGRPISYFTNGQI 320

Query: 295 IND 297
           + D
Sbjct: 321 VPD 323


>gi|322421666|ref|YP_004200889.1| flagellar biosynthetic protein FlhF [Geobacter sp. M18]
 gi|320128053|gb|ADW15613.1| flagellar biosynthetic protein FlhF [Geobacter sp. M18]
          Length = 478

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 114/274 (41%), Gaps = 21/274 (7%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           D+ + E+L + L   D+G    + + E +    Y         L ++   + + L  + K
Sbjct: 218 DERLIEQLAEELRGEDVGPMAVEILTESVRGAAYE-----GATLDELRSHLAENLAGMVK 272

Query: 102 PFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLAAGDTFRSAAIDQL 158
                   +  P ++ VVG  GVGKTT I K++   +      V +   D FR  A++QL
Sbjct: 273 CSGSLRIKKNGPRIVAVVGPTGVGKTTTIAKIAAMYALNRRVSVAMVTMDNFRVGAVEQL 332

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K +A         +    + +         A+    D+++IDTAGR   ++  +  +   
Sbjct: 333 KTYAKIMDLPLEVAGNSQELSK------ALARHSDKDLILIDTAGRSPKDADRLDELKGY 386

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +     +D      V   L ATT    + Q+         T L+ TK+D +   G ++  
Sbjct: 387 LETQTGID------VYLCLSATTRSREIDQIIDTFGTLPVTKLLFTKLDESRSFGCIVDT 440

Query: 279 VVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
            + HK P+ +   G+ +  D+E   ++  +A++ 
Sbjct: 441 CLKHKFPLSYFSTGQKVPEDIEVATSRKLAAMVV 474


>gi|326516596|dbj|BAJ92453.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 218

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 17/199 (8%)

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           K+T + K++  +    L VM+AA DTFRS A++QL+  A R            D A +A 
Sbjct: 25  KSTNLAKVAYWLLQHNLSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAK 84

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA ++A   K DV+++DTAGR+ +N  LM  + K+I + K      P  VL V +A  G 
Sbjct: 85  EAIQEATRNKSDVVLVDTAGRMQDNEPLMRALSKLINLNK------PDLVLFVGEALVGN 138

Query: 244 NALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVG 292
           +A+ Q+  F+                G+++TK D    + G  + +V     PV F+G G
Sbjct: 139 DAVDQLNKFNQKLADLSTVPTARLIDGILLTKFDTIDDKVGAALSMVYISGSPVMFVGCG 198

Query: 293 EGINDLEPFVAKDFSAVIT 311
           +   DL+    K     + 
Sbjct: 199 QSYTDLKKLNVKSIVKTLL 217


>gi|310641564|ref|YP_003946322.1| gtp-binding signal recognition srp54 g [Paenibacillus polymyxa SC2]
 gi|309246514|gb|ADO56081.1| GTP-binding signal recognition SRP54 G [Paenibacillus polymyxa SC2]
          Length = 481

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 118/274 (43%), Gaps = 21/274 (7%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ--RVLYDVSELIHKMLMPLSK 101
              +E+ + ++  ++   + +  +E++  +R     + +         E +   +     
Sbjct: 212 EALQEICEHVLEQEVERDLLEYWIEQVYVRRSEHPFAPETFDWEQAFREEVTSFIQ---T 268

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKI 160
             +   S    ++ V G  GVGKTT I KL+  ++     KV     DT+R +A++QL+ 
Sbjct: 269 RLDKGISQDTKIVYVAGPTGVGKTTTIAKLAAEQLFKHHRKVGFITSDTYRISAVEQLRT 328

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           +A   +      E+      +   A ++ +    D++++DTAGR + N +L++ +  +  
Sbjct: 329 YATILNVPL---EVVQSPGDV-QRAIQRLE--HCDLILMDTAGRNYRNELLVSELQSL-- 380

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
               L P        VL  T+    +  +    +  G   ++ TKMD T   GG+  ++ 
Sbjct: 381 ----LSPINESETYLVLSLTSKSRDMLNITGHFSKFGLGKVVFTKMDETGSCGGMFNLLH 436

Query: 281 THKIPVYFLGVGEGIND--LEPFVAKDFSAVITG 312
              + + ++  G+ + D  L P  A+  + ++ G
Sbjct: 437 QFPMQLAYITNGQNVPDDLLHP-DAEMVTNMLLG 469


>gi|251797423|ref|YP_003012154.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Paenibacillus sp. JDR-2]
 gi|247545049|gb|ACT02068.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Paenibacillus sp. JDR-2]
          Length = 416

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 129/303 (42%), Gaps = 45/303 (14%)

Query: 40  RLDDGVREELEDL--------------------------LIRSDIGVAVAQKIVEELLTK 73
           R++D + EE+  +                          L++ ++   +  ++++ +  +
Sbjct: 124 RINDDLLEEIRYIKQSLKQLSMQKPEIDRPLAIQSLYGRLVQQEVEPELIDRLIDAVNER 183

Query: 74  RYAKDV--SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                   +         EL+ + L P S       S    ++  VG  GVGKTT I KL
Sbjct: 184 IAGNKEMPTGAETWQTARELLLEWLDPYSHQ---SISESARIVHFVGPTGVGKTTTIAKL 240

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +   S   G ++ L   DT+R AA+DQL+ +A+  +      E+      L  +AFKQ +
Sbjct: 241 AAGQSIKFGRQIGLITSDTYRIAAVDQLRTYANILNVPM---EVVFSPMDL-PKAFKQLE 296

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +  +++ +DTAGR   N + ++ +  +++             + VL  T     +  V 
Sbjct: 297 DR--ELIYMDTAGRNFRNELHVSEVNSLLQ------SSQQSETVLVLSLTGKTKDMMAVA 348

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAV 309
                 G   ++ TK+D T+  G ++ + + +++   F+  G+ + +D+ PF A+ +   
Sbjct: 349 DNFVKYGVRKVLFTKLDETSVYGSILNLALKNELQPVFVASGQTVPDDIAPFNAERYIDS 408

Query: 310 ITG 312
           + G
Sbjct: 409 LLG 411


>gi|237753384|ref|ZP_04583864.1| flagellar biosynthesis regulator FlhF [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375651|gb|EEO25742.1| flagellar biosynthesis regulator FlhF [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 466

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 17/227 (7%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLA 145
            E++ KM++  S+  + +     ++I++VG  GVGKTT + KL+ + S   +   KV + 
Sbjct: 248 REVLRKMVVARSEKLSSNAK---NIIMLVGPTGVGKTTTLAKLAARYSRLLNKNYKVGII 304

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             DT+R  A+DQL  +A +            +  + A ++ K       D ++IDT G  
Sbjct: 305 TLDTYRIGAVDQLMFYAKKMKLSIDTVVDTEEFVS-ALDSLKY-----CDYILIDTVGSS 358

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            ++   +  +   +      DP+    V  V+ ATT    L+ +    +  G   L+ TK
Sbjct: 359 QHDRAKLESLKSFVNA----DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTLVFTK 414

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           +D T   G +  ++   K PV +   G+ +  DL    +      + 
Sbjct: 415 LDETHSYGNVFSLIYETKKPVSYFSTGQEVPNDLSVATSDFLIDCLL 461


>gi|20807868|ref|NP_623039.1| flagellar GTP-binding protein [Thermoanaerobacter tengcongensis
           MB4]
 gi|20516432|gb|AAM24643.1| Flagellar GTP-binding protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 341

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 16/243 (6%)

Query: 59  GVA-VAQKIVEELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           GV  +  K+VE  + K  ++     + ++     E++ K +           S R   +L
Sbjct: 93  GVKSITLKLVEYGIEKELSQLLGEGIDKLDDVGKEVLKKRIKAFLGAPQPLDSERSKKVL 152

Query: 116 VVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
            +G  GVGKTT + K++  +  + G KVML   D FR AA+DQLK + D           
Sbjct: 153 FIGPTGVGKTTTVAKIASHLILNEGKKVMLVTADVFRIAAVDQLKSYGDILGVPVKVVGN 212

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             +   L      Q + +  DV++IDTAGR H +   +  +   ++  +         + 
Sbjct: 213 IFEFHKL------QPEFEDYDVVLIDTAGRSHKDEKRINELKTFVKYAE------CDEIF 260

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
             L ATT    L++V   +  AG   LI TK+D T     ++  V     P+ +   G+ 
Sbjct: 261 LCLSATTRSQDLKEVINRYDFAGNYKLIFTKLDETDNYSSILNAVYYSGRPISYFTNGQI 320

Query: 295 IND 297
           + D
Sbjct: 321 VPD 323


>gi|297464866|ref|XP_002703534.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           [Bos taurus]
          Length = 618

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 130/285 (45%), Gaps = 44/285 (15%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 315 KGTLGGMFGMLKGLVGSKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 374

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 375 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKST 434

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 435 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKG 494

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 495 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 548

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG 268
           L V +A  G  A+ Q+  F+                G+++TK D 
Sbjct: 549 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDT 593


>gi|127512312|ref|YP_001093509.1| flagellar biosynthesis regulator FlhF [Shewanella loihica PV-4]
 gi|126637607|gb|ABO23250.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella loihica PV-4]
          Length = 474

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 118/309 (38%), Gaps = 27/309 (8%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIGVAVAQK 65
           S   S I  + +  AS    L   +T +++    RLD  V   LE  L+ ++    VA K
Sbjct: 164 SAPASEIESMREELASLRNLLTHQVTSLLTEQKSRLDP-VGAMLESRLLDAEFSPEVAAK 222

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +            +S   V  D+ + + + L  +      D   +  V+  VG  GVGKT
Sbjct: 223 LSA----------LSEHYVPADLVKALPRSLANMLDNQGDDIVRQGGVVAFVGPTGVGKT 272

Query: 126 TVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           T + KL+ +        +V L   D +R  A +QL  +          +   ++   + Y
Sbjct: 273 TSVAKLAARFAAQHGSDQVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLNELEQILY 332

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +       +   +++IDTAG    +  L   +  +       +   P     VL +T+ +
Sbjct: 333 Q------FRNRKLVLIDTAGMGQRDVRLFQQLDNL-----TANSRLPIRSYLVLSSTSQR 381

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFV 302
             L            +G I+TK+D +      + +++   +P+ ++  G+ +  D++   
Sbjct: 382 RVLEDAVAQFTRIPLSGAILTKLDESVALAPALSVLIQSGLPLSYVTDGQRVPEDMQVAD 441

Query: 303 AKDFSAVIT 311
               +    
Sbjct: 442 TLALANKAL 450


>gi|94266373|ref|ZP_01290072.1| GTP-binding signal recognition particle SRP54, G-domain [delta
           proteobacterium MLMS-1]
 gi|93453025|gb|EAT03513.1| GTP-binding signal recognition particle SRP54, G-domain [delta
           proteobacterium MLMS-1]
          Length = 410

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 17/233 (7%)

Query: 86  YDVSELIHKMLMPL-SKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKV 142
            +V++   ++L  L  +P N D     P +I +VG  GVGKTT   KL+   +     KV
Sbjct: 171 EEVAQWRQQILDQLQVRPLNLDQRGAGPLIIALVGPTGVGKTTTAAKLAAWFTLHENAKV 230

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
            L + D +R  A DQL+ +A             +        A ++ + +  D++IIDTA
Sbjct: 231 ALLSMDCYRIGATDQLRTYARIMRLPC----EIAMKQHDLEAALRKHRDR--DLIIIDTA 284

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           G+   +   +  + +       + P        VL AT  +  + ++   +   G    I
Sbjct: 285 GKSPFDENHVPELDRWFANHAEIMP------YLVLSATAKKEDINRIIATYRPLGIPAAI 338

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCL 314
           +TK+D T     L   +   ++P+  L  G+ +  D  P  +KDF   + G  
Sbjct: 339 LTKLDETRAYAALCQQMTKAELPIACLCTGQKVPEDFRP-ASKDFLKTLFGQG 390


>gi|253682194|ref|ZP_04862991.1| flagellar biosynthetic protein FlhF [Clostridium botulinum D str.
           1873]
 gi|253561906|gb|EES91358.1| flagellar biosynthetic protein FlhF [Clostridium botulinum D str.
           1873]
          Length = 382

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 117/266 (43%), Gaps = 26/266 (9%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           +E++L  SD+   V  KI+           V       D  E + K +  ++   +    
Sbjct: 136 IEEMLEESDLNKNVIAKILS---------IVENNTEDIDEKEKVRKAIKDITSINHTKME 186

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
               ++++VG  GVGKTT I KL+ K++     KV L   DT+R  AI+QL  +A+  S 
Sbjct: 187 G---IVVLVGPTGVGKTTTIAKLAGKLALIDKKKVGLITVDTYRIGAIEQLSTYANIMSI 243

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
            F        +      A  + +    DV+++DT GR   N + +A +   I+       
Sbjct: 244 PF----ESVFSIKEMEAALDRMKE--CDVVLVDTTGRSSKNIMQIAELNAFIQ------K 291

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
               ++  V+ +TT    +  +   +       +I+TK+D T   G ++ I+     P+ 
Sbjct: 292 TNTENIYLVISSTTKDRDVESIVEGYKTLNYANVIITKLDETTTYGSILNILTKANKPLS 351

Query: 288 FLGVGEGI-NDLEPFVAKDFSAVITG 312
           F+  G+ + +D +   +++ + ++ G
Sbjct: 352 FVTTGQNVPDDFKNITSEEIARLVLG 377


>gi|302389681|ref|YP_003825502.1| flagellar biosynthetic protein FlhF [Thermosediminibacter oceani
           DSM 16646]
 gi|302200309|gb|ADL07879.1| flagellar biosynthetic protein FlhF [Thermosediminibacter oceani
           DSM 16646]
          Length = 374

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 16/253 (6%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +  K ++ L      ++         +   I  ++ P ++P  +     P  I+ VG  
Sbjct: 131 DLIDKFIDGLKRDFPGENFDENAAKTYLKNQIISIIKP-TEPIKF-LESEPSKIVFVGPT 188

Query: 121 GVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           GVGKTT I KL+   + + G KV L   DT+R  A++QLK + D             +A 
Sbjct: 189 GVGKTTTIAKLAAFYTLNQGKKVALVTADTYRVGAVEQLKTYGDLLEIPVEVIFEPKEAP 248

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            L        +    D+++IDT G    N + +  I  +I  +K      P     V+ A
Sbjct: 249 ILLK------KLSGYDLILIDTMGTSPRNKMQIKKIKGLIENIK------PTETHMVISA 296

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298
           TT    + ++   +       LI TK+D T   G ++  + +      +L VG+ + +D+
Sbjct: 297 TTRTGDIYEILENYKEINYQKLIFTKLDETRTYGLILNAIYSTNCSPSYLTVGQNVPDDI 356

Query: 299 EPFVAKDFSAVIT 311
           E   A   + +I 
Sbjct: 357 EVASAAKIADLIL 369


>gi|296471767|gb|DAA13882.1| signal recognition particle receptor subunit alpha [Bos taurus]
          Length = 597

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 130/285 (45%), Gaps = 44/285 (15%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 315 KGTLGGMFGMLKGLVGSKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 374

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 375 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKST 434

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R S                    
Sbjct: 435 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKG 494

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G DAA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  V
Sbjct: 495 YGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLV 548

Query: 234 LQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG 268
           L V +A  G  A+ Q+  F+                G+++TK D 
Sbjct: 549 LFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDT 593


>gi|224370769|ref|YP_002604933.1| FlhF [Desulfobacterium autotrophicum HRM2]
 gi|223693486|gb|ACN16769.1| FlhF [Desulfobacterium autotrophicum HRM2]
          Length = 368

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 19/268 (7%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKR-----YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
            L+R+ +    A+ +V+                S     Y + E + ++        +  
Sbjct: 109 ALLRTGVSEKKAKMLVKNACESMDGIYGKGSGNSALLKRYVLKECLRQVKTVDPFAEDQG 168

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM-LAAGDTFRSAAIDQLKIWADRT 165
               PH    VG  GVGKTT I KL+ ++   G K + L + D++R  A +QLK +    
Sbjct: 169 VPGMPHAAAFVGPTGVGKTTTIAKLAARLKFQGKKNVGLISIDSYRMGAFEQLKSYGTIM 228

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               V +    D       A +  +  ++DV++IDTAG   +++  M  +  +      L
Sbjct: 229 GVMCVPAYNRDDLVK----ALE--RMGQMDVVLIDTAGHSPSDTPRMEEVAHV------L 276

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           D     SV  VL  TTG   +R+     +       + TK+D T + G ++  V   ++P
Sbjct: 277 DGGFKVSVHLVLSVTTGFFNMRESAKAFSALNPESYVFTKIDETRQCGKIMDQVGDLRLP 336

Query: 286 VYFLGVGEGIN-DLEPFVAKDFSAVITG 312
           + F+  G+ +  DL     +D   ++ G
Sbjct: 337 ISFVTNGQRVPEDLIVPTPQDLLGIMLG 364


>gi|188997551|ref|YP_001931802.1| GTP-binding signal recognition particle SRP54 G- domain
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932618|gb|ACD67248.1| GTP-binding signal recognition particle SRP54 G- domain
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 399

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 121/285 (42%), Gaps = 20/285 (7%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           + IT+  + + LD      L +LLI+ D+ + VA++IV          +    +      
Sbjct: 128 KEITEEFTGKALD------LINLLIQKDVELDVAKEIVRNACGLEMGSNKLDLKHFTYRE 181

Query: 90  ELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAG 147
            LI  +      K   +  S R  V+  +G  GVGKTT + K++ K+  +   KV + + 
Sbjct: 182 SLIEGIEKSFIFKGDIFKDSDRRRVVAFLGPTGVGKTTNLFKVASKLILEENKKVAVVSI 241

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTF++ A DQ + + +     F              +         VDV++IDT GR H 
Sbjct: 242 DTFKAGAGDQARSYCNILGIPFQILSDPKKLRETVDD------LDFVDVILIDTVGRSHY 295

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +   +  I + +R++          ++ V      + +   ++ +      + L  TK+D
Sbjct: 296 DHWKLGEIKETLRLI-----DEIEYMMVVSCNWKNKESYNLIQKYRKFFNISYLFFTKID 350

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
            TA  G ++ +    K+P+ ++  G+ +  DL+    +  ++ + 
Sbjct: 351 ETAYPGTILNLAYKTKLPLTYISTGQNVPEDLKIITPERLASYLL 395


>gi|170725988|ref|YP_001760014.1| flagellar biosynthesis regulator FlhF [Shewanella woodyi ATCC
           51908]
 gi|169811335|gb|ACA85919.1| GTP-binding signal recognition particle SRP54 G- domain [Shewanella
           woodyi ATCC 51908]
          Length = 467

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 120/309 (38%), Gaps = 25/309 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           + +  AS    L   +T ++S ++   + V   LE  L+ ++    VA K+         
Sbjct: 165 MREELASLRNLLTHQVTSLLSEQKSRTNPVGAMLESKLLEAEFSPMVATKL--------- 215

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             D+S      ++ + + + L  +      D   +  V+  VG  GVGKTT + KL+ + 
Sbjct: 216 -SDLSEHYQPAELVKALPRCLANMLDNQGDDIVRQGGVVAFVGPTGVGKTTTVAKLAARF 274

Query: 136 S--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +      +V L   D +R  A +QL  +          +   ++   + Y+       + 
Sbjct: 275 AAHHGSDQVALITTDHYRIGAFEQLATYGKIMGCPVKQAHDLNELEQILYQ------FRN 328

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
             +++IDTAG    +  L   +  +       +   P     VL AT  +  L       
Sbjct: 329 RKLVLIDTAGMGQRDLRLFQQLDNL-----AANSRLPIRSYLVLSATGQRRVLEDAVAQF 383

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITG 312
                +G ++TK+D +      + +++   +P+ ++  G+ +  D++       +     
Sbjct: 384 KRIPLSGAVLTKLDESVSLAPALSVLIQSGLPLSYVTDGQRVPEDMQVADTLALANKALS 443

Query: 313 CLDYGEEKI 321
            L+  E+ I
Sbjct: 444 VLNRKEQVI 452


>gi|255026959|ref|ZP_05298945.1| SRP receptor alpha-subunit [Listeria monocytogenes FSL J2-003]
          Length = 156

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 70/144 (48%), Positives = 95/144 (65%)

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           RT  D +    GSD AA+ ++A + A+A+K DVL+ DTAGRL N   LM  + K+ RV+ 
Sbjct: 1   RTGVDVIKQAEGSDPAAVMFDAVQAAKARKADVLLCDTAGRLQNKVNLMNELEKVKRVIT 60

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           R  P+APH VL VLDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     
Sbjct: 61  REIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELD 120

Query: 284 IPVYFLGVGEGINDLEPFVAKDFS 307
           IPV F+G+GE ++DL+ F A ++ 
Sbjct: 121 IPVKFVGLGEQMDDLQAFDANEYV 144


>gi|302761688|ref|XP_002964266.1| hypothetical protein SELMODRAFT_81201 [Selaginella moellendorffii]
 gi|300167995|gb|EFJ34599.1| hypothetical protein SELMODRAFT_81201 [Selaginella moellendorffii]
          Length = 221

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 8/208 (3%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT--KR 74
                 ++   I  + ++  +DD        E+   L+++D+   + Q +   +    ++
Sbjct: 3   LGELGSRISGAIQRLNTATVIDDKALTICVNEITHALLQADVQFKLVQALSSNVRKSVEK 62

Query: 75  YAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            A     + ++   V   +  ML    KP       R +V+++VG+ G GKTT   K + 
Sbjct: 63  LAAGHDKRHIIQKAVFHELRAMLDA-GKPSFTPTKGRTNVVMLVGLQGCGKTTTCSKYAL 121

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                G    L   DTFR+ A DQLK  A +    F  S   +D   +A E  ++    K
Sbjct: 122 HYRKKGFNPALVCADTFRAGAFDQLKQNATKVKIPFYGSYTETDPVVIAQEGVRKFADAK 181

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            D++I+DT+GR    + L   + ++   
Sbjct: 182 HDLIILDTSGRHKQENALFEEMRQLAAA 209


>gi|169839024|ref|ZP_02872212.1| Signal recognition particle, subunit FFH/SRP54 [candidate division
           TM7 single-cell isolate TM7a]
          Length = 219

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 6/151 (3%)

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                   +  +DA  +  +  + ++A+    +IIDTAGRLH +  LM  +  +      
Sbjct: 1   MKVPVFTIDESTDALEIVKQGIEASKAEHATYVIIDTAGRLHIDEQLMHELQDIK----- 55

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            D   P+ +L V+D  TGQ+A+   + F+     TG+++TK+DG  RGG  + +      
Sbjct: 56  -DSFNPNEILLVVDGMTGQDAVNVAKEFNEQLDITGVVLTKLDGDTRGGAALSVKEVAGK 114

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+  GE ++D+ PF     ++ I G  D
Sbjct: 115 PIKFISEGEKLDDIAPFHPDRLASRILGMGD 145


>gi|148269165|ref|YP_001243625.1| flagellar biosynthesis regulator FlhF [Thermotoga petrophila RKU-1]
 gi|170287827|ref|YP_001738065.1| GTP-binding signal recognition particle [Thermotoga sp. RQ2]
 gi|281411463|ref|YP_003345542.1| flagellar biosynthetic protein FlhF [Thermotoga naphthophila
           RKU-10]
 gi|147734709|gb|ABQ46049.1| GTP-binding signal recognition particle SRP54, G- domain
           [Thermotoga petrophila RKU-1]
 gi|170175330|gb|ACB08382.1| GTP-binding signal recognition particle SRP54 G- domain [Thermotoga
           sp. RQ2]
 gi|281372566|gb|ADA66128.1| flagellar biosynthetic protein FlhF [Thermotoga naphthophila
           RKU-10]
          Length = 378

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 111/250 (44%), Gaps = 20/250 (8%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K+++ L  K    D +       +SE    ++             +   +L VG  GVGK
Sbjct: 132 KLIDFLRMKFGDLDPNSNETFKILSEQFANLVK------TNAPDFKNAKVLFVGTTGVGK 185

Query: 125 TTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT + KL+ +   D   +V +   DT+R AA +QLKI+AD        +    +A     
Sbjct: 186 TTSLAKLAARFKIDEKKRVAILTLDTYRIAAAEQLKIYADIMDIPMKIAYTPKEAE---- 241

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
             ++    K  D++++DTAGR H N + M+ +  +   +K      P+    V+      
Sbjct: 242 --YEMMALKDYDIVLVDTAGRSHQNDLQMSELRALSEAVK------PNITFLVISMNYKL 293

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFV 302
           + ++++    +    T +I+TKMD T+  G  + I     +P+ F+  G+ + +D+    
Sbjct: 294 DDVKRIVERFSTVKPTHIILTKMDETSVYGTFVNISEITGLPIAFVTNGQRVPDDIFEAN 353

Query: 303 AKDFSAVITG 312
             + + ++ G
Sbjct: 354 PMELARIVAG 363


>gi|168182728|ref|ZP_02617392.1| flagellar biosynthesis protein FlhF [Clostridium botulinum Bf]
 gi|182674220|gb|EDT86181.1| flagellar biosynthesis protein FlhF [Clostridium botulinum Bf]
          Length = 408

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 144/316 (45%), Gaps = 26/316 (8%)

Query: 3   NQKVASESLSWIRKLTKG--FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
            + + S+S S+  K +KG  F+ T   + E I D+   +++   + +  +     +D   
Sbjct: 108 KEILESKSESFQNKSSKGKEFSETKDLMNE-IRDL---KKIVKDIGKSEKSY---ADENS 160

Query: 61  AVAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           ++     + +L  +   K +     L D  E   K+   +    +   +    V ++VG 
Sbjct: 161 SLVNFFKDLDLEEELIEKIIKKVGNLEDNLEEREKIKRVIEDTIDVRVNSVGKVTVLVGP 220

Query: 120 NGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSD 177
            GVGKTT I KL+ K+S     KV L   DT+R  A++QLK +AD  +  F V   +   
Sbjct: 221 TGVGKTTTIAKLAGKLSLIDKKKVGLITIDTYRIGAVEQLKTYADIMNIPFKVVFSMKDM 280

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+             DV+++DT GR   N + ++ +   I  +K        SV  V+
Sbjct: 281 EKAII-------DLDYCDVILVDTTGRSSKNMMQISELRAFIEKIKEK------SVHLVI 327

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-N 296
            A+T    +  +   +++     +I+TK+D T+  G ++ ++   K P+ F+  G+ + +
Sbjct: 328 SASTKNKDVETIIRGYSILEYENIIITKLDETSIYGSILTVLDKGKKPISFITTGQDVPD 387

Query: 297 DLEPFVAKDFSAVITG 312
           D++    ++ + ++ G
Sbjct: 388 DIKEGNKEEIAKIVLG 403


>gi|150021315|ref|YP_001306669.1| flagellar biosynthesis regulator FlhF [Thermosipho melanesiensis
           BI429]
 gi|149793836|gb|ABR31284.1| GTP-binding signal recognition particle SRP54, G- domain
           [Thermosipho melanesiensis BI429]
          Length = 373

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 127/306 (41%), Gaps = 30/306 (9%)

Query: 3   NQKVASESLSWIRKL--TKGFASTSLKLKE------GITDIISSRRLDDGVR--EELEDL 52
           N ++ ++ +  ++++        ++ +L E       +  ++S ++ D+      +L   
Sbjct: 62  NNEMKTQQIYQLQEILSKNSQKRSTDELNEIKKMMYELKTMVSMQKSDNEPEWIRDLRKA 121

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L   D+     Q+I+E+++     K   +     +   ++ ++ +P  K  N D + +  
Sbjct: 122 LNFHDVN----QEIIEKVIEYIRIKYGKIDFEDENTRFVLSEIFLPFIKTDNPDITGK-- 175

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVC 171
            ++ VG  GVGKTT + KL+ KMS    K +     DT+R AA +QLK +A         
Sbjct: 176 -VMFVGPTGVGKTTTLAKLAAKMSINEHKKVGILTLDTYRIAATEQLKTYATLMDIPMRV 234

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +    +A        +       +V+ IDTAGR   N + M  I  M  ++       P 
Sbjct: 235 AYTPKEAK------IELEAMADFEVVFIDTAGRSQKNELQMNEIKAMAEIIS------PD 282

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
               V+      + L  +         T +I+TKMD T+  G  +        P+ ++  
Sbjct: 283 YKFLVVGMQYRSSDLELISKKFNDVSPTHIILTKMDETSSLGHFLNAGHFINKPIIYITN 342

Query: 292 GEGIND 297
           G+ + D
Sbjct: 343 GQRVPD 348


>gi|149194329|ref|ZP_01871426.1| flagellar biosynthesis regulator FlhF [Caminibacter mediatlanticus
           TB-2]
 gi|149135504|gb|EDM23983.1| flagellar biosynthesis regulator FlhF [Caminibacter mediatlanticus
           TB-2]
          Length = 410

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 128/319 (40%), Gaps = 20/319 (6%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLK---EGITDIISSRRLD-DGVREELEDLLIRS 56
           ++N K+  E+   I++L K F   +  LK     + DI+    L+      E+  L   S
Sbjct: 99  LNNIKIKKEN-DEIKELKKEFTKLADTLKFLQATVWDILHKDDLELPPEFSEIYALSRAS 157

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
            +      ++++ ++     K    +  +      + K ++P+         H+  +++ 
Sbjct: 158 GMHYKHLDEMMKLVIKYMPIKMRQNRETIRRYFYTLLKKMIPIRLEREIKPPHK-KILMF 216

Query: 117 VGVNGVGKTTVIGKLSKKMSDA---GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           VG  GVGKTT I KL+ + +       KV +   DT+R  A++QL  +A           
Sbjct: 217 VGPTGVGKTTTIAKLAARYAYKLSTRHKVGIITLDTYRIGAVEQLMTYAKMMKLPIETVV 276

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +D              +  D ++IDT G   ++   +  +   ++V    D  A  +V
Sbjct: 277 DPNDFEEALN------SLRHNDYILIDTVGSSQHDKEKIEKLNSFLKV----DSFAEINV 326

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             VL A T    L  +    ++      + TK+D T   G +  +++  K P+ +  +G+
Sbjct: 327 NLVLSAVTKYEDLIDIYKNFSILPIDTFVFTKLDETKSYGNVFSLLLDTKKPISYFSIGQ 386

Query: 294 GI-NDLEPFVAKDFSAVIT 311
            + +DL    A      I 
Sbjct: 387 EVPDDLIVANADYLINGIL 405


>gi|15643669|ref|NP_228715.1| flagellar biosynthesis regulator FlhF [Thermotoga maritima MSB8]
 gi|4981443|gb|AAD35988.1|AE001755_11 flagellar biosynthesis protein FlhF [Thermotoga maritima MSB8]
          Length = 378

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 133/327 (40%), Gaps = 36/327 (11%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDD-----------GVREELE 50
           ++   +  +   +L +          + I        R +++            + E L 
Sbjct: 55  EEERKKEENTSYRLQEILVKNRQSSNDNIKGEFDEIKRTINEIKQMLVTEKRQTLPEGLS 114

Query: 51  DLLI---RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
            +L    + +I   +  K+++ L  K    D +       +SE    ++           
Sbjct: 115 KILYGMEKQEILPEIRYKLIDFLKMKFGDLDPNSNETFKILSEQFVNLVK------TNAP 168

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
             +   +L VG  GVGKTT + KL+ +   D   +V +   DT+R AA +QLKI+AD   
Sbjct: 169 DFKNAKVLFVGTTGVGKTTSLAKLAARFKIDEKKRVAILTLDTYRIAAAEQLKIYADIMD 228

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                +    +A       ++    K  D++++DTAGR H N + M+ +  +   +K   
Sbjct: 229 IPMKIAYTPKEAE------YEMMALKDYDIVLVDTAGRSHQNDLQMSELRALSEAVK--- 279

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
              P+    VL      + ++++    +    T +I+TKMD T+  G  + I     +P+
Sbjct: 280 ---PNITFLVLSMNYKLDDMKRIVERFSAVKPTHIILTKMDETSVYGTFVNISEITGLPI 336

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITG 312
            F+  G+ + +D+      + + ++ G
Sbjct: 337 AFVTNGQRVPDDIFEANPVELARIVAG 363


>gi|331269332|ref|YP_004395824.1| flagellar biosynthesis protein flhF [Clostridium botulinum
           BKT015925]
 gi|329125882|gb|AEB75827.1| flagellar biosynthesis protein flhF [Clostridium botulinum
           BKT015925]
          Length = 381

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 118/266 (44%), Gaps = 26/266 (9%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           +E++L   D+   V  +I+  +  +   +D+  +  +    + I  +     +       
Sbjct: 135 VEEMLEECDLNKKVITQILSIV--QNNPEDIDEKEKVRKAIKDITIINDNKMEG------ 186

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
               ++++VG  GVGKTT I KL+ K++     KV L   DT+R  AI+QL  +A+  S 
Sbjct: 187 ----IVVLVGPTGVGKTTTIAKLAGKLALIDKKKVGLITVDTYRIGAIEQLSTYANIMSI 242

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
            F          ++        + K  DV+++DT GR   N + +A +   ++       
Sbjct: 243 PF------ESVFSIKEMEAALDRMKDCDVILVDTTGRSSKNIMQIAELNAFVQ------K 290

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
               ++  V+ ATT    +  +   +       +I+TK+D T   G ++ I+     P+ 
Sbjct: 291 TNTENIYLVISATTKDKDVESIVEGYKTLNYANVIITKLDETTTYGSILNILSNANKPLS 350

Query: 288 FLGVGEGI-NDLEPFVAKDFSAVITG 312
           F+  G+ + +D +   +++ + ++ G
Sbjct: 351 FVTTGQNVPDDFKKITSEEIARLVLG 376


>gi|117919805|ref|YP_868997.1| flagellar biosynthesis regulator FlhF [Shewanella sp. ANA-3]
 gi|117612137|gb|ABK47591.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella sp. ANA-3]
          Length = 458

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 123/300 (41%), Gaps = 26/300 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIG 59
              +V+ +  + I  +    AS    L   ++ +++   +R+D  V   LE  L+ ++  
Sbjct: 141 KKPQVSQKQNADIEAMRDELASLRNLLTHQVSALMTEHKKRIDP-VGAMLESKLLEAEFS 199

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            AVA K+         ++  +   ++  + + +  ML         D   +  V+ +VG 
Sbjct: 200 PAVANKL------AALSQHYTPAELVRALPQSLANMLDNQGD----DIVKQGGVVALVGP 249

Query: 120 NGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +   ++
Sbjct: 250 TGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLAE 309

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              + Y+       +   +++IDTAG    +  L   +  +       +   P     VL
Sbjct: 310 LEQILYQ------FRNRKLVLIDTAGMGQRDMRLYQQLDNL-----TANSRIPIRSYLVL 358

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            AT  +  L+           +G+++TK+D +    G + +++   +P+ ++  G+ + +
Sbjct: 359 SATGQRRVLQDAVNHFKRIPLSGVVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQRVPE 418


>gi|292493582|ref|YP_003529021.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Nitrosococcus halophilus Nc4]
 gi|291582177|gb|ADE16634.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Nitrosococcus halophilus Nc4]
          Length = 393

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 104/259 (40%), Gaps = 21/259 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L+  L+R  IG+ +  ++  +L  +    +   Q     V      +L  L    + D  
Sbjct: 117 LKAQLLRRLIGLDLVPELCRQLAAQVSNSNDPHQIWQQAVQ-----VLTDLIPIADDDTL 171

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               ++ ++G  GVGKTT + K++ +  +      V L   D+FR  A +QL  +     
Sbjct: 172 TTGGIVALIGPTGVGKTTSVAKIAARFALRRGIHSVALVTTDSFRIGAQEQLHTYGRILG 231

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                ++       +      +       +++IDTAG    +  L      +     ++ 
Sbjct: 232 VPVKVAQDRQALEEILDGLLDRQ------LVLIDTAGMSQRDMHLTKQFAMLAGGGPKI- 284

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    VL A T  +AL +V         +G I+TK+D  A  GG++  V+ H++P+
Sbjct: 285 -----RNYLVLSAATQSSALDEVVQQFNRVELSGCILTKIDEAASLGGIVSTVIRHQLPL 339

Query: 287 YFLGVGEGINDLEPFVAKD 305
            ++  G+ +   E F A  
Sbjct: 340 AYISDGQRVP--EDFGAAR 356


>gi|157376183|ref|YP_001474783.1| flagellar biosynthesis regulator FlhF [Shewanella sediminis
           HAW-EB3]
 gi|157318557|gb|ABV37655.1| GTP-binding signal recognition particle SRP54, G-domain [Shewanella
           sediminis HAW-EB3]
          Length = 464

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 117/309 (37%), Gaps = 25/309 (8%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLT 72
              + +  AS    L   +T +++ ++   + V   LE  L+ ++   AVA K+      
Sbjct: 160 FDAMREELASLRNLLTHQVTSLLTEQKSRVNPVGAMLESKLLDAEFSPAVATKL------ 213

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
                D+S      ++   + + L  +      D   +  V+  VG  GVGKTT + KL+
Sbjct: 214 ----SDLSEHYTPAELVRTLPRSLANMLDNQGDDIVRQGGVVAFVGPTGVGKTTTVAKLA 269

Query: 133 KKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            +        +V L   D +R  A +QL  +          +   S+   + Y+      
Sbjct: 270 ARYVAHHGADQVALITTDHYRIGAFEQLATYGKIMGCPVKQAHDLSELEQILYQ------ 323

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +   +++IDTAG    +  L   +  +       +   P     VL +T  +  L    
Sbjct: 324 FRNRKLVLIDTAGMGQRDIRLFQQLDNL-----AANSRIPIRSYLVLSSTGQRRVLEDAV 378

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAV 309
                   +G ++TK+D +      + +++   +P+ ++  G+ +  D++       +  
Sbjct: 379 AQFKRIPLSGAVLTKLDESISLAPALSVLIQSGLPLSYVTDGQRVPEDMQVADTLALANK 438

Query: 310 ITGCLDYGE 318
               LD  E
Sbjct: 439 ALSVLDKKE 447


>gi|170754532|ref|YP_001782261.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum B1
           str. Okra]
 gi|169119744|gb|ACA43580.1| flagellar biosynthesis protein FlhF [Clostridium botulinum B1 str.
           Okra]
          Length = 408

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 135/324 (41%), Gaps = 49/324 (15%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLL-IRSDIG----------- 59
           +    +   S S   +         ++  +   + +E+ DL  I  DIG           
Sbjct: 104 LDSYKEILESKSESFQN---KSFKGKKSSETKDLMDEIRDLKKIVKDIGKSEKSYVDENS 160

Query: 60  --------VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
                   + + ++ +E+++ K+             +  +I           +   +   
Sbjct: 161 SLVKFFKDLDLEEEFIEKII-KKVGNLEENLEEREKIKRVIED-------TIDVRVNSVG 212

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169
            V ++VG  GVGKTT I KL+ K+S     KV L   DT+R  A++QLK +AD  +  F 
Sbjct: 213 KVTVLVGPTGVGKTTTIAKLAGKLSLIDKKKVGLITIDTYRIGAVEQLKTYADIMNIPFK 272

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V   +     A+             DV+++DT GR   N + ++ +   I  +K      
Sbjct: 273 VVFSMRDMEKAII-------DLDYCDVILVDTTGRSSKNMMQISELRAFIEKIKEK---- 321

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             SV  V+ A+T    +  +   +++     +I+TK+D T+  G ++ I+   K P+ F+
Sbjct: 322 --SVHLVISASTKNKDIETIVKGYSILEYENIIITKLDETSIYGSILTILDKGKKPISFI 379

Query: 290 GVGEGI-NDLEPFVAKDFSAVITG 312
             G+ + +D++    ++ + ++ G
Sbjct: 380 TTGQDVPDDIKEGNKEEIAKIVLG 403


>gi|153939997|ref|YP_001391945.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum F str.
           Langeland]
 gi|152935893|gb|ABS41391.1| flagellar biosynthesis protein FlhF [Clostridium botulinum F str.
           Langeland]
          Length = 408

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 133/325 (40%), Gaps = 47/325 (14%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLL-IRSDIG--------- 59
           + +    +   S S   +         +   +   + +E+ DL  I  DIG         
Sbjct: 102 NVLDSYKEILESKSESFQN---KSFKGKEFSETKDLMDEIRDLKKIVKDIGKSEKSYADE 158

Query: 60  ----------VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
                     + + ++ +E+++ K+             +  +I           +   + 
Sbjct: 159 NSSLVNFFKDLDLEEEFIEKII-KKVGNLEENLEEREKIKRVIED-------TIDVRVNS 210

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
              V ++VG  GVGKTT I KL+ K+S     KV L   DT+R  A++QLK +AD  +  
Sbjct: 211 VGKVTVLVGPTGVGKTTTIAKLAGKLSLIDKKKVGLITIDTYRIGAVEQLKTYADIMNIP 270

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F          ++             DV+++DT GR   N + ++ +   I  +K     
Sbjct: 271 F------KVVFSIKDMEKAIIDLDYCDVILVDTTGRSSKNMMQISELRAFIEKIKEK--- 321

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
              SV  V+ A+T    +  +   +++     +I+TK+D T+  G ++ I+   K P+ F
Sbjct: 322 ---SVHLVISASTKNKDIETIIKGYSILEYENIIITKLDETSIYGSILTILDKGKKPISF 378

Query: 289 LGVGEGI-NDLEPFVAKDFSAVITG 312
           +  G+ + +D++    ++ + ++ G
Sbjct: 379 ITTGQDVPDDIKEGHKEEIAKIVLG 403


>gi|149908442|ref|ZP_01897105.1| flagellar biosynthesis protein [Moritella sp. PE36]
 gi|149808605|gb|EDM68540.1| flagellar biosynthesis protein [Moritella sp. PE36]
          Length = 488

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 112/268 (41%), Gaps = 19/268 (7%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E +  +LI+  + +   +++ ++L     A +V+    +    + I  +L         D
Sbjct: 218 EPIRAMLIKHLVKIGFTEEVADQL-----ASNVAENCSIESAWDQIQALLTDNVLIAPDD 272

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              +   + +VG  GVGKTT I KL+ K +       V L   DT+R  A +QL  +   
Sbjct: 273 ILSKGGAVALVGPTGVGKTTTIAKLAAKFAMLHGSDNVALITTDTYRIGAHEQLATYGRI 332

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                        A   A  A    Q +   +++IDTAG    ++ L   +  ++   K 
Sbjct: 333 MGCTV------KVARDDAELAQYLYQLRSKRLVLIDTAGMGQRDTRLSEQLDSLVNNDKV 386

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           +          V+ AT  +  +++           G I++K+D +   G ++ +++ H++
Sbjct: 387 VI-----RNYLVVPATAQRRVVQETLEHFHHIPLAGCILSKVDESLSLGEVLSVLIQHQL 441

Query: 285 PVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           P+ ++  G+ +  D++   A+   + + 
Sbjct: 442 PIAYITNGQRVPEDIDSANAQQLVSTVL 469


>gi|95929869|ref|ZP_01312610.1| GTP-binding signal recognition particle SRP54, G-domain
           [Desulfuromonas acetoxidans DSM 684]
 gi|95134165|gb|EAT15823.1| GTP-binding signal recognition particle SRP54, G-domain
           [Desulfuromonas acetoxidans DSM 684]
          Length = 437

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 130/308 (42%), Gaps = 26/308 (8%)

Query: 12  SWIRKLTKGFASTSLK-----LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI 66
           S ++ L +     S +     +   +    +    D  + + L  L I ++    +A   
Sbjct: 143 SLVKDLPEQLDKLSRQKPQPVIAPAVQRFSTMSTADQQIHDGLTRLGIEAEAASTIAHYA 202

Query: 67  VEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
             +L TK+ A   V        ++EL+      L +P           I ++G  GVGKT
Sbjct: 203 SSQLTTKQIADPAVLNAFFAKTIAELVQTTGSILPQPGESKR------IALIGPTGVGKT 256

Query: 126 TVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T I KL+   +   G +V L   DT+R AA++QLK++ +  +              +   
Sbjct: 257 TTIAKLAASHLLAGGKRVALVTIDTYRIAAVEQLKVYGEIMNLPVEVVMNADQLHEVLE- 315

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                +    D+++IDTAGR   +S+ +  + + + V   ++ H       V+ ATT + 
Sbjct: 316 -----RHSDKDLVLIDTAGRSPKDSVSLQELEEFLHVDPNIEAH------LVMSATTRER 364

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVA 303
            L ++    +      +++TK+D     G L+ I + +  P+ +L  G+ +  DL    +
Sbjct: 365 DLYEIYGRFSALSPQSMLLTKLDECNSLGVLLNIHLRNNCPISYLANGQKVPEDLVQATS 424

Query: 304 KDFSAVIT 311
           +  S++I 
Sbjct: 425 ELVSSMIL 432


>gi|304404265|ref|ZP_07385927.1| flagellar biosynthetic protein FlhF [Paenibacillus curdlanolyticus
           YK9]
 gi|304347243|gb|EFM13075.1| flagellar biosynthetic protein FlhF [Paenibacillus curdlanolyticus
           YK9]
          Length = 451

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 136/315 (43%), Gaps = 26/315 (8%)

Query: 2   SNQKVASESL-SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           S +++A E+L S IR + +     S +          +          L + L   ++  
Sbjct: 154 STRQIAEEALISEIRDMKEWILKLSRQ---------QAAESQPAAIRALRERLDEQEVST 204

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGV 119
               K+++EL     A D    +    V +L  + L    KP      +    VI  VG 
Sbjct: 205 EWIDKLIDELEQLPEAGD--GWKDAAIVWKLAAQQLTAWLKPSEHAGIASGGRVIYFVGP 262

Query: 120 NGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
            GVGKTT I KL+ + +   G KV     DT+R AA+DQL+ +A+  +      E+    
Sbjct: 263 TGVGKTTTIAKLAAEQTIKYGRKVGFITSDTYRIAAVDQLRTYANILNVPM---EVVFSP 319

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +   AF+Q Q +  +++++DTAGR + + + ++ +  ++         A  S   VL 
Sbjct: 320 NEV-PRAFEQLQEQ--EMILMDTAGRNYRSELHVSEVNSLM-----YHKQAEGSAYLVLS 371

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
            T     +  V       G    + TK+D T   G L+ + +   +   ++  G+ + +D
Sbjct: 372 MTGRTKDMAVVAERFLPYGIRNAVFTKLDETNVYGMLMNLTLEFGLMPAYVTSGQTVPDD 431

Query: 298 LEPFVAKDFSAVITG 312
           + PF A+ + A++ G
Sbjct: 432 IAPFNAETYVALLLG 446


>gi|226950057|ref|YP_002805148.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A2 str.
           Kyoto]
 gi|226843456|gb|ACO86122.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A2 str.
           Kyoto]
          Length = 408

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 137/326 (42%), Gaps = 49/326 (15%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLL-IRSDIG--------- 59
           + +    +   S S   +         +   +   +  E++DL  I  DIG         
Sbjct: 102 NVLDSYKEILESKSESFQN---KSFKGKEFSETKDLMNEIKDLKKIVKDIGKSEKSYADE 158

Query: 60  ----------VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
                     + + ++ +E+++ K           L D  E   K+   +    +   + 
Sbjct: 159 NSSLVNFFKDLDLEEEFIEKIIKKV--------GDLEDNLEEREKIKRVIEDTIDVRVNS 210

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
              V ++VG  GVGKTT I KL+ K+S     KV L   DT+R  A++QLK +AD  +  
Sbjct: 211 VGKVTVLVGPTGVGKTTTIAKLAGKLSLIDKKKVGLITIDTYRIGAVEQLKTYADIMNIP 270

Query: 169 F-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           F V   +     A+             DV+++DT GR   N + ++ +   I  +K    
Sbjct: 271 FKVVFSMKDMEKAII-------DLDYCDVILVDTTGRSSKNMMQISELRAFIEKIKEK-- 321

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
               SV  V+ A+T    +  +   +++     +I+TK+D T+  G ++ ++   K P+ 
Sbjct: 322 ----SVHLVISASTKNKDVETIIKGYSILEYENIIITKLDETSIYGSILTVLDKGKKPIS 377

Query: 288 FLGVGEGI-NDLEPFVAKDFSAVITG 312
           F+  G+ + +D++    ++ + ++ G
Sbjct: 378 FITTGQDVPDDIKEGNKEEIAKIVLG 403


>gi|7576789|gb|AAF63991.1| unknown in vivo-induced protein 134-21 [Pseudomonas aeruginosa]
          Length = 163

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/147 (43%), Positives = 98/147 (66%), Gaps = 1/147 (0%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP 111
           L+ +D+GV     IV+ L  +   K+++    LY  + E +  +L P+ +P   D +  P
Sbjct: 17  LLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREP 76

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +VILVVGVNGVGKTT IGKL+KK+   G KVMLAAGDTFR+AA++QL++W +R     + 
Sbjct: 77  YVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIA 136

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLI 198
              G+D+A++ ++A + A+A+ +DVLI
Sbjct: 137 QHTGADSASVIFDAVQAAKARGIDVLI 163


>gi|332981454|ref|YP_004462895.1| flagellar biosynthetic protein FlhF [Mahella australiensis 50-1
           BON]
 gi|332699132|gb|AEE96073.1| flagellar biosynthetic protein FlhF [Mahella australiensis 50-1
           BON]
          Length = 353

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 116/262 (44%), Gaps = 21/262 (8%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           D+L   D+   +A +I++        K   +Q+ + DV   I + L     P + D + R
Sbjct: 108 DILSAHDVNPDIASEIMD--KAMAIYKGGDMQQCVEDV---IKEYLGQPV-PISLD-NGR 160

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
             VI+ +G  GVGKTT + KL+       G KV L   DT+R AA++QL+ ++D      
Sbjct: 161 QSVIIFLGPTGVGKTTTLAKLAAYYGIQLGKKVALITADTYRIAAVEQLRTYSDIMQLPL 220

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 ++         +  +    D+++IDT GR  N+   +  I  +I+  +  D   
Sbjct: 221 SVVYSSNELKQ------EIGRYSDADIIMIDTPGRSPNDIDGINDIKDLIKASEPTD--- 271

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              V  ++ A+    A +++           L+ TK+D T   G ++ +    + P+ ++
Sbjct: 272 ---VFLLVSASFNYAACQRLWQRFGDIEDIRLLFTKLDETDCWGTILNMRHISRRPLSYI 328

Query: 290 GVGEGI-NDLEPFVAKDFSAVI 310
             G+ + +D++       +A I
Sbjct: 329 TDGQVVPDDIKVVDVDAVAAKI 350


>gi|289548938|ref|YP_003473926.1| flagellar biosynthetic protein FlhF [Thermocrinis albus DSM 14484]
 gi|289182555|gb|ADC89799.1| flagellar biosynthetic protein FlhF [Thermocrinis albus DSM 14484]
          Length = 378

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 119/303 (39%), Gaps = 27/303 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG---VREE-------LEDLLIRSDIGVAVAQKIVEEL 70
                  LKE +   +   ++++     +EE       +   L+   +   VA+ I+E  
Sbjct: 76  LEKLKETLKEVLQT-MKRPQVEEEKNTSQEEYSMRATQIMKKLLERGVARDVAKAIMEAA 134

Query: 71  L--TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                   K      VL  ++E I + +  + +P       R  VI ++G  GVGKTT +
Sbjct: 135 CGYDYEIRKLDLKGEVLESLTEGIERNVPMIKEPMERWKDFR--VIALLGPTGVGKTTTL 192

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+  +  +G ++ +   D++R  A +QL+ +A      F  ++          E    
Sbjct: 193 AKLAYVLKKSGKRIGVITVDSYRVGAREQLRTYAHLMEIPFRIADTPQKLRECVGE---- 248

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
                +D+L++DTAGR   + + +  +      L          +   L A T +  + +
Sbjct: 249 --LSSMDLLLVDTAGRSQYDEMRIRELATFFHRLP------TVELYLTLSANTDERIMYE 300

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSA 308
                +     GL+ TK+D TA  G +I +    K+P+     G+ + +        F A
Sbjct: 301 AVEHFSFLPLEGLVFTKVDETAYFGNIINVAFRTKLPILCFTNGQRVPEDIVLANGRFLA 360

Query: 309 VIT 311
            + 
Sbjct: 361 QLL 363


>gi|308068673|ref|YP_003870278.1| flagellar GTP-binding protein [Paenibacillus polymyxa E681]
 gi|305857952|gb|ADM69740.1| Flagellar GTP-binding protein [Paenibacillus polymyxa E681]
          Length = 480

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 118/274 (43%), Gaps = 21/274 (7%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ--RVLYDVSELIHKMLMPLSK 101
              +E+ + ++  ++   + +  +E++  +R A   + +         E +   +     
Sbjct: 211 EPLQEICERVLEQEVERDLLEYWLEQVYVRRSAHPFAPETFDWEQAFREEVASFIQ---T 267

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKI 160
             +   S    ++ V G  GVGKTT I KL+  ++     KV     DT+R +A++QL+ 
Sbjct: 268 RLDKGISKDTKIVYVAGPTGVGKTTTIAKLAAEQLFKHHRKVGFITSDTYRISAVEQLRT 327

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           +A   +      E+      + + A ++ +    D++++DTAGR + N +L++ +  +  
Sbjct: 328 YATILNVPL---EVVQSPGDV-HRAIQRLE--HCDLILMDTAGRNYRNELLVSELQSL-- 379

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
               L P        VL  T+    +  +    +  G   ++ TKMD T   GG+  ++ 
Sbjct: 380 ----LSPINESETYLVLSLTSKSKDMLNITGHFSKFGLGKVVFTKMDETGSCGGMFNLLH 435

Query: 281 THKIPVYFLGVGEGINDLEPFVAK-DFS-AVITG 312
              + + ++  G+ + D +      +   +++ G
Sbjct: 436 QFPMQLAYITNGQNVPD-DLLHPDTEMVTSMLLG 468


>gi|212639546|ref|YP_002316066.1| flagellar biosynthesis regulator FlhF [Anoxybacillus flavithermus
           WK1]
 gi|212561026|gb|ACJ34081.1| Flagellar GTP-binding protein FlhF [Anoxybacillus flavithermus WK1]
          Length = 368

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 129/316 (40%), Gaps = 22/316 (6%)

Query: 4   QKVASESLSWIRKLT-KGFASTSLKLKEGITDIISSRRLD--DGVREELEDLLIRSDIGV 60
           QK+  +       +  +       +LK  I  +     ++      + ++  LI  +I  
Sbjct: 64  QKIKEKRKERTESMRDEQLLKEIHELKATIRQLSQGGGVEHYPTPLKAIDAHLIDQEISD 123

Query: 61  AVAQKIVEELLTKRY--AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            V   ++  LL + Y   K+ +   V   + E I + L  LS       S +   I VVG
Sbjct: 124 DVRAMLMSTLLQRWYTSEKNATYDEVKQWLHEEIVRALSSLSFG---GISFQKKFINVVG 180

Query: 119 VNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
             GVGKTT + K++         KV     DT+R AAIDQLK +A   +          D
Sbjct: 181 PTGVGKTTTLAKMAADCVIKHRKKVAFITTDTYRIAAIDQLKTYAKILNVPLEVCYNLDD 240

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                     + +    D++ IDTAGR   N+  +  + +MI      D +       VL
Sbjct: 241 FRK------AKEKLASYDIVFIDTAGRNFRNAQYVNDLKEMI------DFNEEMETFLVL 288

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-N 296
             T     ++ +    ++      I TK+D T+R G ++ +++  +I   ++  G+ + +
Sbjct: 289 SLTAKWRDMKDIYTQFSLIPIHKFIFTKVDETSRHGAMLNMMIQCRIGAAYMTHGQNVPD 348

Query: 297 DLEPFVAKDFSAVITG 312
           D+     +  + ++TG
Sbjct: 349 DIVEATPQLVANMVTG 364


>gi|58426836|gb|AAW75873.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 610

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 99/243 (40%), Gaps = 16/243 (6%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           LT+  A  +     L+    L+  +L         D   R  VI +VG  G GKTT I K
Sbjct: 361 LTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAK 420

Query: 131 LSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           L+++ +       V L   DT R    +QL  +  +       ++       L       
Sbjct: 421 LAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQLGVAVHEADSAESLLDL------F 474

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +   +++IDTAG    +  L A +  +             + L VL A    + L +
Sbjct: 475 ERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-------QQVTSLLVLPANAHFSDLDE 527

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFS 307
           V    A A   G+++TK+D T R G  + +VV H++P+ ++  G+ + +DL    A    
Sbjct: 528 VVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLV 587

Query: 308 AVI 310
             +
Sbjct: 588 LRL 590


>gi|291277486|ref|YP_003517258.1| flagellar biosynthesis protein [Helicobacter mustelae 12198]
 gi|290964680|emb|CBG40535.1| flagellar biosynthesis protein [Helicobacter mustelae 12198]
          Length = 447

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 105/244 (43%), Gaps = 24/244 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K     V+++R      E++ KML   ++  +        +I+++G  GVGKTT + KL+
Sbjct: 212 KMRENSVTIKRYFR---EILRKMLYCRNENLDMSSKK---IIMLIGPTGVGKTTTLAKLA 265

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQ 188
            + S       +V +   DT+R  A+DQL  +A +         E       +  +A + 
Sbjct: 266 ARYSRLLDHKYRVGIITLDTYRIGALDQLTWYARKMKISIETVIEPEDFLREI--DALRY 323

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
                 DV+++DTAG   ++   +  + + ++   ++D      V  VL ATT    L+ 
Sbjct: 324 -----CDVILVDTAGHSQHDKQKIQQLRRFVQNDYKID------VSLVLSATTKFGDLKD 372

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFS 307
           +    +  G    + +K+D +   G L  +    K P+ +L +G+ +  DL        +
Sbjct: 373 IYHAFSDLGVDSFVFSKLDESRGLGNLFSLAYETKKPISYLSIGQEVPTDLCVATNDYLA 432

Query: 308 AVIT 311
             + 
Sbjct: 433 DCLL 436


>gi|94264041|ref|ZP_01287841.1| GTP-binding signal recognition particle SRP54, G-domain [delta
           proteobacterium MLMS-1]
 gi|93455552|gb|EAT05739.1| GTP-binding signal recognition particle SRP54, G-domain [delta
           proteobacterium MLMS-1]
          Length = 410

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 17/233 (7%)

Query: 86  YDVSELIHKMLMPL-SKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKV 142
            +V++   ++L  L  +P N       P +I +VG  GVGKTT   KL+   +     KV
Sbjct: 171 EEVAQWRQQILDQLQVRPLNLAQQGAGPLIIALVGPTGVGKTTTAAKLAAWFTLHENAKV 230

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
            L + D +R  A DQL+ +A             +        A ++ + +  D++IIDTA
Sbjct: 231 ALLSMDCYRIGATDQLRTYARIMRLPC----EIAMKQHDLEAALRKHRDR--DLIIIDTA 284

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           G+   +   +  + +       + P        VL AT  +  + ++   +   G    I
Sbjct: 285 GKSPFDENHVPELDRWFANHAEIMP------YLVLSATAKKEDINRIIATYRPLGIPAAI 338

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCL 314
           +TK+D T     L   +   ++P+  L  G+ +  D  P  +KDF   + G  
Sbjct: 339 LTKLDETRAYAALCQQMTKAELPIACLCTGQKVPEDFRP-ASKDFLKTLFGQG 390


>gi|313681604|ref|YP_004059342.1| flagellar biosynthetic protein flhf [Sulfuricurvum kujiense DSM
           16994]
 gi|313154464|gb|ADR33142.1| flagellar biosynthetic protein FlhF [Sulfuricurvum kujiense DSM
           16994]
          Length = 422

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 94  KMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSD---AGLKVMLAAG 147
           ++LM    P   + + RP    VI++VG  GVGKTT I KL+ + S       KV L   
Sbjct: 198 QVLMRKMIPVRLESAPRPGSKKVIMLVGPTGVGKTTSIAKLAARFSYLLEKKYKVGLVVL 257

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT+R  A++QL  +A                 + A  A + +     D ++IDT G    
Sbjct: 258 DTYRIGAVEQLMQYARMMKLGIETVVDP-PEFSSALNALRYS-----DYILIDTMGSSPY 311

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +   +  I + +R     +      V+ V+ ++   + L+      A  G   ++ TK+D
Sbjct: 312 DKGKIEKIYECLR---DNNTDYTVDVVLVMPSSIKYDDLKATYENFAPLGIDTMMFTKLD 368

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLDYGE 318
            T   G +  +V   K+P+ +  VG+ +  DL    +      +    + GE
Sbjct: 369 ETRGFGNIFSLVYETKVPISYFSVGQEVPEDLVVATSDFLVDCLMNGFNRGE 420


>gi|220932504|ref|YP_002509412.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halothermothrix orenii H 168]
 gi|219993814|gb|ACL70417.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Halothermothrix orenii H 168]
          Length = 356

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 117/248 (47%), Gaps = 14/248 (5%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +EL+ K     V  Q+ L  + E     ++   +P   + + +  V+L  G  GVGKTT
Sbjct: 117 CQELMKKLKNASVDSQKSLISLLERKLNQVIGNPEPIRVNRNEQ-KVVLFAGPTGVGKTT 175

Query: 127 VIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
            I KL+ + + D  +KV L   DT+R AA+ QL+ ++D  +          + + +  + 
Sbjct: 176 TIAKLAARFALDKEVKVGLITADTYRIAAVQQLQTYSDIINIPLHVVYNERELSQIIRDK 235

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            K+       ++++DTAG   N+ +    +G++ +   R   +    +  ++  +T    
Sbjct: 236 LKK-----YQLILVDTAGSSWNDQL---QLGRLKKFASR---NYVDEIHLLISMSTKSED 284

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAK 304
           ++ +    ++     L++TK+D T   G ++ I   +K+P  ++  G+ + +D++P   +
Sbjct: 285 IKGILKKFSIIKPDKLLLTKLDETTTYGDIVNIKREYKLPYSYITYGQDVPDDIKPARKE 344

Query: 305 DFSAVITG 312
           +    I G
Sbjct: 345 ELIQYILG 352


>gi|315648118|ref|ZP_07901219.1| flagellar biosynthetic protein FlhF [Paenibacillus vortex V453]
 gi|315276764|gb|EFU40107.1| flagellar biosynthetic protein FlhF [Paenibacillus vortex V453]
          Length = 479

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 131/316 (41%), Gaps = 29/316 (9%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDI------ISSRRLD----DGVREELEDLLIRSDIG 59
             S   +L  G + +  ++ E + ++      +S + L+          L DLL++ D+ 
Sbjct: 176 KESLSSRL--GISESEQRVLEELKEMKEWIARLSRQNLEAQHLPEPLHSLRDLLLKQDLS 233

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVG 118
             + ++ +        A    +Q    ++ ++I+K     +             ++ + G
Sbjct: 234 AKLTEEWLMAAEEAWTAN--HMQLSDAELQDVIYKQAAAFIEGRIGGGVQPETRIVYIAG 291

Query: 119 VNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
             GVGKTT I K++  ++     KV     DT+R +A++QL+ +A   +      +   D
Sbjct: 292 PTGVGKTTTIAKIAAEQLFRHQRKVGFITSDTYRISAVEQLRTYASILNVPMEVVQSPGD 351

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                  A ++ Q    D++++DTAGR + N +L++ +  +                 VL
Sbjct: 352 ----MQRALQKLQD--CDLILMDTAGRNYRNELLVSELQSL------FSHSDQSETYLVL 399

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-N 296
             T+  + + ++           +I TKMD T   G +  ++  H + + ++  G+ + +
Sbjct: 400 SLTSKSSDMIEIADHFNKYALDKVIFTKMDETGSYGSMFNLIDAHDLRLSYMTNGQNVPD 459

Query: 297 DLEPFVAKDFSAVITG 312
           DL    ++    ++ G
Sbjct: 460 DLLMADSERLCNLLLG 475


>gi|113969640|ref|YP_733433.1| flagellar biosynthesis regulator FlhF [Shewanella sp. MR-4]
 gi|113884324|gb|ABI38376.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella sp. MR-4]
          Length = 458

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 122/300 (40%), Gaps = 26/300 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIG 59
              + + +  + +  +    +S    L   ++ +++   +R+D  V   LE  L+ ++  
Sbjct: 141 KKPQSSPKQNADLEAMRDELSSLRNLLTHQVSALMTEHKKRIDP-VGAMLESKLLEAEFS 199

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            AVA K+         ++  +   ++  + + +  ML         D   +  V+ +VG 
Sbjct: 200 PAVANKL------AALSQHYTPAELVRALPQSLANMLDNQGD----DIVKQGGVVALVGP 249

Query: 120 NGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +   ++
Sbjct: 250 TGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLAE 309

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              + Y+       +   +++IDTAG    +  L   +  +       +   P     VL
Sbjct: 310 LEQILYQ------FRNRKLVLIDTAGMGQRDMRLYQQLDNL-----TANSRIPIRSYLVL 358

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            AT  +  L+           +G+++TK+D +    G + +++   +P+ ++  G+ + +
Sbjct: 359 SATGQRRVLQDAVNHFKRIPLSGVVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQRVPE 418


>gi|114046870|ref|YP_737420.1| flagellar biosynthesis regulator FlhF [Shewanella sp. MR-7]
 gi|113888312|gb|ABI42363.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella sp. MR-7]
          Length = 458

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 122/300 (40%), Gaps = 26/300 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIG 59
              + + +  + +  +    +S    L   ++ +++   +R+D  V   LE  L+ ++  
Sbjct: 141 KKPQSSPKQNADLEAMRDELSSLRNLLTHQVSALMTEHKKRIDP-VGAMLESKLLEAEFS 199

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            AVA K+         ++  +   ++  + + +  ML         D   +  V+ +VG 
Sbjct: 200 PAVANKL------AALSQHYTPAELVRALPQSLANMLDNQGD----DIVKQGGVVALVGP 249

Query: 120 NGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +   ++
Sbjct: 250 TGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLAE 309

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              + Y+       +   +++IDTAG    +  L   +  +       +   P     VL
Sbjct: 310 LEQILYQ------FRNRKLVLIDTAGMGQRDMRLYQQLDNL-----TANSRIPIRSYLVL 358

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            AT  +  L+           +G+++TK+D +    G + +++   +P+ ++  G+ + +
Sbjct: 359 SATGQRRVLQDAVNHFKRIPLSGVVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQRVPE 418


>gi|168334566|ref|ZP_02692722.1| GTP-binding signal recognition particle SRP54, G- domain
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 374

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 127/281 (45%), Gaps = 28/281 (9%)

Query: 39  RRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           + ++D +  E     E +L +S +   + + I++++L +     V        +S  ++ 
Sbjct: 110 KNIEDTIISEEKIPFEKILKQSMLEEGIEESIIDDILDQVSENTVDG------ISRALYN 163

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSA 153
            L  +   FN++    P V   VG  GVGKTT I KL + K+ +   KV+L   DT+R A
Sbjct: 164 TLTSVMPKFNYNI---PRVTFFVGSTGVGKTTTIAKLTAIKVLEENKKVVLLTADTYRIA 220

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           A+ QLK +A+  + +    E   + + +     K   A   D + IDTAGR H +   + 
Sbjct: 221 AVAQLKTYAEILNVEI---ETIFEPSDIPKYLQKWKDA---DYIFIDTAGRSHKDFNQLG 274

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-AGTTGLIMTKMDGTARG 272
            + +++  ++         V  VL+  T    ++ +   +        LI+TK+D T   
Sbjct: 275 ELKELLATVEEK------QVFLVLNMNTQYKDIQSIVPIYKNLVDRFALIITKLDETDGI 328

Query: 273 GGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITG 312
           G L+ I    K  + ++  G+ +  D+E F    +  ++ G
Sbjct: 329 GNLLNIASCTKTEIAYITTGQNVPEDIEKFETLKYVRLLLG 369


>gi|254458953|ref|ZP_05072376.1| GTP-binding signal recognition particle SRP54, G-domain
           [Campylobacterales bacterium GD 1]
 gi|207084224|gb|EDZ61513.1| GTP-binding signal recognition particle SRP54, G-domain
           [Campylobacterales bacterium GD 1]
          Length = 423

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 89/219 (40%), Gaps = 14/219 (6%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD---AGLKVMLAAG 147
           L+ KM+    +      + +  VI++VG  GVGKTT I KL+ + S       KV L   
Sbjct: 202 LLRKMIPIRRESVPTPGTKK--VIMLVGPTGVGKTTSIAKLAARYSYLMQKRYKVGLVVL 259

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT+R  A++QL  +A          E   D    A         +  D ++IDT G    
Sbjct: 260 DTYRIGAVEQLMQYARMMKL---GIETVVDPPEFATAL---NSLRYCDYILIDTMGSSPY 313

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +   +    K+   L+  D      V+ V+ ++     L+      +      ++ TK+D
Sbjct: 314 DKNKIE---KIYECLEANDTEFNVDVVLVMPSSIKYEDLKATYDNFSTLNVDTVMFTKLD 370

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            T   G +  +    K P+ +  VG+ + +     + DF
Sbjct: 371 ETMGFGNIFSLAYETKRPISYFSVGQEVPEDLVCASSDF 409


>gi|157961204|ref|YP_001501238.1| flagellar biosynthesis regulator FlhF [Shewanella pealeana ATCC
           700345]
 gi|157846204|gb|ABV86703.1| GTP-binding signal recognition particle SRP54 G- domain [Shewanella
           pealeana ATCC 700345]
          Length = 470

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 115/303 (37%), Gaps = 25/303 (8%)

Query: 17  LTKGFASTSLKLKEGITDI-ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           + +  AS    L   ++ + +  +   D V   LE  L+ ++   A+A+K+         
Sbjct: 168 MKQELASIRNLLTHQVSSLMVEQKNRIDPVGAMLESKLLDAEFSPAIAKKL--------- 218

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              +S      ++   + + L  +      D   +  V+  VG  GVGKTT + KL+ + 
Sbjct: 219 -SSLSEHYSPAELVASLPRSLANMLDNQGDDIVRQGGVVAFVGPTGVGKTTTVAKLAARF 277

Query: 136 S--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +      +V L   D +R  A +QL  +          +   ++   + Y+       + 
Sbjct: 278 AAYHGSDQVALITTDHYRIGAFEQLATYGKIMGCPVKQAHDFNELEQILYQ------FRN 331

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
             +++IDTAG    +  L   +  +       +   P     V+ AT  +  L       
Sbjct: 332 RKLVLIDTAGMGQRDQRLFQQLDSL-----AANSRLPIRSYLVMSATGQRRVLEDAVKQF 386

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITG 312
                +G ++TK+D +      + +++   +P+ ++  G+ +  D++       +     
Sbjct: 387 TRIPLSGAVLTKLDESISLAPALSVLIQSGLPLSYVTDGQRVPEDMQVADTLSLANRALA 446

Query: 313 CLD 315
            LD
Sbjct: 447 ALD 449


>gi|226313049|ref|YP_002772943.1| flagellar biosynthesis protein FlhF [Brevibacillus brevis NBRC
           100599]
 gi|226095997|dbj|BAH44439.1| probable flagellar biosynthesis protein FlhF [Brevibacillus brevis
           NBRC 100599]
          Length = 448

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 113/268 (42%), Gaps = 18/268 (6%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           +   L++ ++   +  +I+ +++ K +  +  + +        +I  M+ P     +   
Sbjct: 194 IRAQLLKQEVTEELTAEIIRQIMEKSQPGEKWTEEEAFTVCRTIITSMIEPY-TASSPRL 252

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
                     G  GVGKTT I KL+   M     K+     DT+R AA++QLK +A+  +
Sbjct: 253 GKNVRYAFFFGPTGVGKTTTIAKLAANSMLKEKRKIGFITADTYRMAAVEQLKTYANILN 312

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 E+      +A  A +  +    D++ +DTAGR   N   + GI +++       
Sbjct: 313 VPL---EVVFSPREMA-AAME--RLSDCDLIFVDTAGRNFRNDEYVEGIRELLE------ 360

Query: 227 PHAPHSV-LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
            H   SV   VL  ++  N ++ +    A      +I TK D T   G ++ +     + 
Sbjct: 361 -HGKDSVNYLVLSLSSKFNDMKAIVQNFAEVQVKQVIFTKADETNSFGTMLNVCQEMNLQ 419

Query: 286 VYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           + ++  G+ + +D+     +  S +I G
Sbjct: 420 LSYVTTGQNVPDDIVVATPELVSTMIMG 447


>gi|150390464|ref|YP_001320513.1| GTP-binding signal recognition particle [Alkaliphilus
           metalliredigens QYMF]
 gi|149950326|gb|ABR48854.1| GTP-binding signal recognition particle SRP54, G- domain
           [Alkaliphilus metalliredigens QYMF]
          Length = 391

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 17/251 (6%)

Query: 66  IVEELLTKRYAKDVSVQRVL---YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           ++++LL      D++ + VL     + E + ++L       +      P +I  VG  GV
Sbjct: 149 LIDKLLETYEEIDITNKTVLNKEATLKEKLVEVLEQYIFKVSTINKESPQIIFFVGPTGV 208

Query: 123 GKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           GKTT I KL+     + G  V L + DT+R AA++QL+ ++D  +         S+    
Sbjct: 209 GKTTTIAKLAAHHALNEGQSVGLISADTYRIAAVEQLRTYSDILNIPLEVVYKSSEINKA 268

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
                     K  D++ IDTAGR H N   +  +  +++ ++         V  V+  TT
Sbjct: 269 IDN------LKHKDLIFIDTAGRSHKNKEQILELETLLQQIE------CKEVYFVISCTT 316

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEP 300
               ++++   +       LI TK+D  +  G +I   +  + P+ ++  G+ + +D+E 
Sbjct: 317 RTVDIKEMIKAYDFLKDYKLIFTKLDEASTFGTIINTAMFIQKPLSYITTGQSVPDDIEI 376

Query: 301 FVAKDFSAVIT 311
                   +I 
Sbjct: 377 LDLDKIVDLIV 387


>gi|195953857|ref|YP_002122147.1| GTP-binding signal recognition particle SRP54 G- domain
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933469|gb|ACG58169.1| GTP-binding signal recognition particle SRP54 G- domain
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 373

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 106/259 (40%), Gaps = 17/259 (6%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVL---YDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           I + V Q I +++L      D+++ R+     D  E + + L         DFS     I
Sbjct: 123 ISMGVEQDIAKKILEDSCGFDININRLDLKYEDDYESLKEGLSKNISLKTLDFSKSILSI 182

Query: 115 L-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           L +VG  GVGKTT I KL+      G K  +   D++R+ A+ QL+ + +        ++
Sbjct: 183 LALVGPTGVGKTTTIAKLAYMYKTQGFKTGVITLDSYRTGAVQQLQSYVNLLEMPLRVAD 242

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                     E         +D++ IDTAGR   +SI +  +   +  +  L       +
Sbjct: 243 TPQKLRECIGE------LSSLDIIFIDTAGRSQYDSIRLKELKHYLENVPSL------EI 290

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
              +  TT +  +          G   +I TK+D T   G ++       +P+ FL  G+
Sbjct: 291 ALTVSTTTDERIILDSAKRFGELGIKSIIFTKLDETVYPGCIVNAAFKTNLPISFLTFGQ 350

Query: 294 GIN-DLEPFVAKDFSAVIT 311
            +  D+E     + + ++ 
Sbjct: 351 KVPNDIEVATYDNIANILL 369


>gi|57168746|ref|ZP_00367877.1| flagellar biosynthetic protein FlhF, putative [Campylobacter coli
           RM2228]
 gi|305432512|ref|ZP_07401674.1| flagellar biosynthesis protein FlhF [Campylobacter coli JV20]
 gi|57019793|gb|EAL56476.1| flagellar biosynthetic protein FlhF, putative [Campylobacter coli
           RM2228]
 gi|304444551|gb|EFM37202.1| flagellar biosynthesis protein FlhF [Campylobacter coli JV20]
          Length = 476

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 104/258 (40%), Gaps = 23/258 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +E +         +VQR  Y    L+  +L   +          +  ++++VG  GVGKT
Sbjct: 237 IENMPAAMKTNKDAVQRYFYS---LLRNILPCRVESEI-----KKQKIMMLVGPTGVGKT 288

Query: 126 TVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           T + KL+ + +      K  +   DT+R  A++QL  +A       + S    D      
Sbjct: 289 TTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPIIDSIEPKDLD---- 344

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA K       +V+++DT G    +   +A   + +     +  +A   V  V+ A T  
Sbjct: 345 EAIK--SLNNCEVILVDTIGNSQYDQNKLAKTKEFL-----MHSNAEIDVSLVVSANTKH 397

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFV 302
             L ++    +      LI+TK D T   G +  ++    IP+ F   G+ + +D+E   
Sbjct: 398 EDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLSFFSTGQEVPDDIEVAN 457

Query: 303 AKDFSAVITGCLDYGEEK 320
           +      I    + G++ 
Sbjct: 458 SDFLVRCILEGFNKGKDN 475


>gi|84624135|ref|YP_451507.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84368075|dbj|BAE69233.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 552

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 99/243 (40%), Gaps = 16/243 (6%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           LT+  A  +     L+    L+  +L         D   R  VI +VG  G GKTT I K
Sbjct: 303 LTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAK 362

Query: 131 LSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           L+++ +       V L   DT R    +QL  +  +       ++       L       
Sbjct: 363 LAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQLGVAVHEADSAESLLDL------F 416

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +   +++IDTAG    +  L A +  +             + L VL A    + L +
Sbjct: 417 ERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-------QQVTSLLVLPANAHFSDLDE 469

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFS 307
           V    A A   G+++TK+D T R G  + +VV H++P+ ++  G+ + +DL    A    
Sbjct: 470 VVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLV 529

Query: 308 AVI 310
             +
Sbjct: 530 LRL 532


>gi|118581845|ref|YP_903095.1| GTP-binding signal recognition particle [Pelobacter propionicus DSM
           2379]
 gi|118504555|gb|ABL01038.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Pelobacter propionicus DSM 2379]
          Length = 446

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 110/270 (40%), Gaps = 24/270 (8%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           + +EL    I SD+ V      +++L +          + L      +   L+  +    
Sbjct: 192 LAQELSRSGISSDL-VETILDALDKLPSG------GGNQALKSRLSEVFGRLIRFAGTLK 244

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWAD 163
               + P +I +VG  GVGKTT   KL+   +   G KV L   D FR  AI+QLK ++ 
Sbjct: 245 V-RKNAPRIIALVGPTGVGKTTTTAKLAAMHAFNRGNKVALITMDIFRVGAIEQLKTYSR 303

Query: 164 RTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                  V S      +A+   A         D++ IDTAGR H ++  +  + +     
Sbjct: 304 IMGIPIEVASTPKELESAVEKHA-------DCDLIFIDTAGRSHKDTEKLNEMKQF---- 352

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                  P  V   L ATT    L ++    ++   + ++ TK+D +   G +I +++  
Sbjct: 353 --FADKIPMEVFLCLSATTKDRELTEILNCFSIFQISKVVFTKIDESESFGNMINVLMKG 410

Query: 283 KIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
            + V +   G+ +  D+E       + +I 
Sbjct: 411 NLQVAYFTTGQRVPEDIEVATPSKLADMIL 440


>gi|114562375|ref|YP_749888.1| flagellar biosynthesis regulator FlhF [Shewanella frigidimarina
           NCIMB 400]
 gi|114333668|gb|ABI71050.1| GTP-binding signal recognition particle SRP54, G- domain
           [Shewanella frigidimarina NCIMB 400]
          Length = 461

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 122/308 (39%), Gaps = 25/308 (8%)

Query: 17  LTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           L +  AS    L   ++ ++   ++  D V   LE  LI ++   AVA K+         
Sbjct: 159 LREEMASLRNLLTHQVSSLMKDQKKRTDPVGAMLESKLIAAEFSPAVAAKL--------- 209

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              +S      D+   + + L  L      D   R  V+  VG  GVGKTT + K++ + 
Sbjct: 210 -AGLSQHYTPADLVRALPQSLANLLDNQGDDIVKRGGVVAFVGPTGVGKTTSLAKIAARF 268

Query: 136 S--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +      +V L   D +R  A +QL  +          +   ++   + Y+       + 
Sbjct: 269 AAHHGPEQVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLTELEQILYQ------FRN 322

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
             +++IDTAG    +  L   +  +       +   P     VL AT  +  L+      
Sbjct: 323 RKLVLIDTAGMGQRDMRLYQQLDNL-----TANSRIPIRSYLVLSATGQRRVLQDAVEHF 377

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITG 312
                 G I+TK+D +    G + +++ +++P+ ++  G+ +  D++     + +     
Sbjct: 378 KRIPLAGAILTKLDESVSIAGALSVLIQNELPLSYVTDGQRVPEDMKVADTLELAKKALA 437

Query: 313 CLDYGEEK 320
            L+  E++
Sbjct: 438 ALNETEQQ 445


>gi|83589643|ref|YP_429652.1| flagellar biosynthesis regulator FlhF [Moorella thermoacetica ATCC
           39073]
 gi|83572557|gb|ABC19109.1| GTP-binding signal recognition particle SRP54, G-domain [Moorella
           thermoacetica ATCC 39073]
          Length = 392

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 106/263 (40%), Gaps = 24/263 (9%)

Query: 50  EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
              L+  ++   +A  +V  L       +V    +   ++E +   ++  S         
Sbjct: 138 RQALLDQELAPELAADLVAGLDMTA-GPEVIGAVIRNRLAERLAGQVLAESGQ------- 189

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
              V   VG  GVGKTT + K++ + S     KV L   DT+R  A+DQL+ +A+     
Sbjct: 190 --RVQAFVGPTGVGKTTTLAKVAARHSLYLEQKVGLITLDTYRIGAVDQLRTYAEIMGLP 247

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E+         EA    + +  D++++DTAGR   N  ++A     +  +      
Sbjct: 248 L---EVAMTPREF-REAL--GRLEDRDIILVDTAGRAPENKAMLAETRGFLEAMPEGA-- 299

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
               V  VL + T +  L Q            LI TK+D T+  G ++ +     +P+ +
Sbjct: 300 ----VYLVLSSATRRQDLLQAVERFRPLNYNRLIFTKLDETSCPGVMVTVAAAAGVPLAY 355

Query: 289 LGVGEGI-NDLEPFVAKDFSAVI 310
           +  G+ + +DLE       +  I
Sbjct: 356 VTAGQDVPDDLEVADPYLLAERI 378


>gi|187933078|ref|YP_001885060.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721231|gb|ACD22452.1| flagellar biosynthesis protein FlhF [Clostridium botulinum B str.
           Eklund 17B]
          Length = 403

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 127/301 (42%), Gaps = 30/301 (9%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVR--EELEDLLIRSDIGVAVAQKIVEELLTKR 74
           +         ++KE +  +I      D V+  +++++ LI  D+     ++I+  +    
Sbjct: 123 IKDSMHKEVSEMKELLNRVI-ENTSKDEVKKIDKIQEKLIEIDVDEGFHEEILSRI---- 177

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
                +V     D  EL+      +    + D S +   I +VG  GVGKTT I KL+ K
Sbjct: 178 ----NNVDDENIDKYELLRNAFEEVFLECSKDISGK---IALVGPTGVGKTTTIAKLAGK 230

Query: 135 MSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQAK 192
           +S    K +     DT+R  AI+QLK +A+  +  F V   I     A+           
Sbjct: 231 LSLIDKKSVGLITVDTYRIGAIEQLKTYAEIMNIPFKVVITIKEMEEAI-------NSMN 283

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV++IDT GR   N++ ++ +   +          P  V  V+ ATT    +  +   
Sbjct: 284 DCDVILIDTTGRSSKNTMQISELRAFVE------KANPDYVSMVISATTKNRDIVSILNG 337

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           ++      +I+TK+D T   G L  I+     PV ++  G+ +  D+     ++ +  + 
Sbjct: 338 YSDLSYDNVIITKLDETTVYGSLYNIMKRSNKPVKYITTGQNVPNDMIVPTREEMARFML 397

Query: 312 G 312
           G
Sbjct: 398 G 398


>gi|152990365|ref|YP_001356087.1| flagellar biosynthesis protein FlhF [Nitratiruptor sp. SB155-2]
 gi|151422226|dbj|BAF69730.1| flagellar biosynthesis protein FlhF [Nitratiruptor sp. SB155-2]
          Length = 391

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 130/337 (38%), Gaps = 37/337 (10%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITD------------------IISSRRLD 42
           +S ++   E   ++ K+          LKE I                    ++   + D
Sbjct: 64  LSKEEKNQEIDQFLTKIEAMIDKKIEPLKEEIKKRSGVSFEPAELPSHARNPLLKEEQFD 123

Query: 43  DGVRE--ELEDLLIRSDIGVAVAQKIVEE---LLTKRYAKDVSVQRVLYDVSELIHKMLM 97
           +   +  EL  LLI +D+   VA+ +V+E   L       D++       ++  I K + 
Sbjct: 124 EFTGDAVELIKLLIENDVDPKVAKMLVKESCGLDIDTNKLDLNTSFFKEALTTAIEKKIK 183

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAID 156
               P      +   VI  VG  GVGKTT + K++ ++  +  LK+ + + DTF+  A+ 
Sbjct: 184 -FRGPLKIQKGNF-KVIAFVGPTGVGKTTNLFKIASELVINQKLKIAVISIDTFKVGAVQ 241

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           Q + +++  +  F       +                +DV++IDT GR H +   +  + 
Sbjct: 242 QARSFSNILNIPFYAITDSKNLKKTLQN------LNGIDVVLIDTVGRSHYDYWRLGEM- 294

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
              R +           L +        AL  V  +        L  TK+D T + G L+
Sbjct: 295 ---REILGGGADFMDISLVLSCNYKNSEALEVVNRYRTFFPIHSLFFTKIDETYKPGILL 351

Query: 277 PIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITG 312
            + +   IP+ F+ VG+ +  D+     +  +  + G
Sbjct: 352 NLPIKTDIPLSFISVGQKVPEDIRLLNPERVAQYVLG 388


>gi|317129188|ref|YP_004095470.1| flagellar biosynthetic protein FlhF [Bacillus cellulosilyticus DSM
           2522]
 gi|315474136|gb|ADU30739.1| flagellar biosynthetic protein FlhF [Bacillus cellulosilyticus DSM
           2522]
          Length = 371

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 130/271 (47%), Gaps = 18/271 (6%)

Query: 46  REELEDLLIRSDIGVAVAQ-KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
            +E+ +LL   D+   V++ +++++LL + Y+++   ++    + E   +++  L    +
Sbjct: 114 LKEINELLNSIDVE-DVSRLQVMKQLLKRWYSEN-GDEKSKETIHEWTKEIINDLLSHID 171

Query: 105 WD-FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWA 162
           +  F+++   + VVG  GVGKTT + K++ K++ + G KV     DT+R AAI+QLK +A
Sbjct: 172 YSPFNYKKRFLNVVGPTGVGKTTTLAKIAAKIAISDGRKVAFITTDTYRIAAIEQLKTYA 231

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
              +             ++      + +  + DV+++D+AGR   N + +  +G++I   
Sbjct: 232 KILNVPVEV------VYSIEDFKNAKDRLSEYDVILVDSAGRNFLNDLYVKQLGEVI--- 282

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
              D +       VL  T+  N ++++           +I TK D T   G ++ + + +
Sbjct: 283 ---DFNEEMETHLVLSLTSKYNDMKKIIDQFQAININKVIFTKADETQSHGAMLNVALNY 339

Query: 283 KIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
            I   ++  G+ + +D+     +     + G
Sbjct: 340 GIGSSYITFGQNVPDDIALATKEKVVEQLLG 370


>gi|197335858|ref|YP_002156662.1| flagellar biosynthetic protein FlhF [Vibrio fischeri MJ11]
 gi|197317348|gb|ACH66795.1| flagellar biosynthetic protein FlhF [Vibrio fischeri MJ11]
          Length = 492

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 132/316 (41%), Gaps = 22/316 (6%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +ES   +  +    +S    L+  ++ ++         RE L  +LI+    + +++++ 
Sbjct: 181 NESNEELENMRSEMSSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLEKMGLSEELA 237

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           ++L     A  +       D    + K+L         D   R  +I ++G  GVGKTT 
Sbjct: 238 DQL-----ACYIPEDVPAKDAWPALLKLLAEQIPTSKVDTLSRGGIIALLGPTGVGKTTT 292

Query: 128 IGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           I KL+ +  M     +V L   DTFR  A +QL I+          ++   + A++ Y+ 
Sbjct: 293 IAKLAARAAMEYGPDQVALVTTDTFRIGAQEQLAIYGRIMGCPVRIAKDADELASVLYQ- 351

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                 +   ++++DTAG    +  L   +  ++      +  +  +   V+ AT  +  
Sbjct: 352 -----LRNRRLVLVDTAGMGQRDVRLTEQLDTIME-----NSGSQINSYLVMPATAQRRV 401

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAK 304
           L++          +G I++K+D +   G LI + + + +P+ ++  G+ +  D+     K
Sbjct: 402 LQETIDHFKRIPLSGCILSKIDESLSLGELISVTIENGLPISYIANGQRVPEDIVLAQPK 461

Query: 305 DFSAVITGCLDYGEEK 320
              A     L+   EK
Sbjct: 462 YLVAKANELLEKATEK 477


>gi|24374724|ref|NP_718767.1| flagellar biosynthesis regulator FlhF [Shewanella oneidensis MR-1]
 gi|24349384|gb|AAN56211.1|AE015759_3 flagellar biosynthetic protein FlhF [Shewanella oneidensis MR-1]
          Length = 458

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 122/300 (40%), Gaps = 26/300 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS--SRRLDDGVREELEDLLIRSDIG 59
              + + +  + +  +    AS    L   ++ +++   +R+D  V   LE  L+ ++  
Sbjct: 141 KKPQTSQKQNADLEAMRDELASLRNLLTHQVSALMTEHKKRIDP-VGAMLESKLLEAEFS 199

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            AVA K+         ++  +   ++  + + +  ML         D   +  V+ +VG 
Sbjct: 200 PAVASKL------AALSQHYTPAELVRALPQSLANMLDNQGD----DIVKQGGVVALVGP 249

Query: 120 NGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ + +      +V L   D +R  A +QL  +          +   ++
Sbjct: 250 TGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLAE 309

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              + Y+       +   +++IDTAG    +  L   +  +       +   P     VL
Sbjct: 310 LEQILYQ------FRNRKLVLIDTAGMGQRDMRLYQQLDNL-----TANSRIPIRSYLVL 358

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            AT  +  L+           +G+++TK+D +    G + +++   +P+ ++  G+ + +
Sbjct: 359 SATGQRRVLQDAVNHFKRIPLSGVVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQRVPE 418


>gi|320538193|ref|ZP_08038088.1| SRP54-type protein, GTPase domain protein [Treponema phagedenis
           F0421]
 gi|320145010|gb|EFW36731.1| SRP54-type protein, GTPase domain protein [Treponema phagedenis
           F0421]
          Length = 439

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/267 (23%), Positives = 113/267 (42%), Gaps = 23/267 (8%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPF 103
             ++++ +L  +D   +    I+  L  +   KD+ +  +    V + I + ++ L  P 
Sbjct: 167 TLKKIQSILEDNDFSFSYINDILTRLKEELTYKDLANYAKEESTVLQWIKESIVILEPPN 226

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-------SDAGLKVMLAAGDTFRSAAID 156
                +    I +VG  GVGKTT + KL+               +V +   D FR  A+ 
Sbjct: 227 LEKTRN----IALVGPTGVGKTTTLAKLAAFYFKFESKRKQKQQRVKVITTDFFRIGAVS 282

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
            ++ + +    DF  ++       + Y    Q +A   DV+ IDTAGR  N++  +    
Sbjct: 283 HMERYCEVMGIDFCGADT--IPTFVTYLTLYQNEA---DVVCIDTAGRAANDTNNIKKTV 337

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           +     K +D      +   + A T  + LR++   + V   T LI+TK D T R G L+
Sbjct: 338 EYFEAAKNID----FEMYLTVAAGTKTSDLREIFQQYDVFNYTSLIITKFDETLRIGNLL 393

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVA 303
             +   KIP+ ++  G+ +     F  
Sbjct: 394 SALKDIKIPISYITFGQTVP--RDFGP 418


>gi|78221648|ref|YP_383395.1| GTP-binding signal recognition particle [Geobacter metallireducens
           GS-15]
 gi|78192903|gb|ABB30670.1| GTP-binding signal recognition particle SRP54, G-domain [Geobacter
           metallireducens GS-15]
          Length = 452

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 88/209 (42%), Gaps = 18/209 (8%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P ++ +VG  GVGKTT I KL+   +     +  L   D FR  A++QLK ++    
Sbjct: 254 KNSPRIVALVGPTGVGKTTTIAKLAAHYALRENHRAALITIDNFRVGAVEQLKTYSRIMG 313

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVD--VLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                +   ++         + A     D  +++IDTAGR H ++  +  +   +     
Sbjct: 314 VPVEVASTPAE--------LEAAIELHSDKELILIDTAGRSHKDNEKIEELKGFLESRFA 365

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           +       +   L ATT    + +V     V   + +I TK+D +   G ++   +  K 
Sbjct: 366 I------EIHLCLAATTRDREILEVVERFGVLPISRVIFTKLDESESYGTIVNAHLRTKF 419

Query: 285 PVYFLGVGEGIN-DLEPFVAKDFSAVITG 312
           P+ +   G+ +  DLE       + ++ G
Sbjct: 420 PLSYFTTGQRVPEDLEIATPGRVAGLVLG 448


>gi|167945835|ref|ZP_02532909.1| signal recognition particle-docking protein FtsY [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 227

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 2/165 (1%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           V         +L +  + T   L +G+ +++   + +DD + EELE LL+ +D+GV    
Sbjct: 18  VEQREKGLFSRLKERLSRTRSNLSDGLANLLLGRKEIDDELLEELETLLLTADVGVDATS 77

Query: 65  KIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +I+++L  +   K++S    L   + + +  +L   + P       RP V+L+VG+NG G
Sbjct: 78  RIIDDLTGRVKRKELSDPEALSRILKQQLLAILESCATPPPPPPPGRPLVVLMVGINGAG 137

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           KTT IGKL++++   G +VMLAAGDTFR+AA++QL+ W +R    
Sbjct: 138 KTTTIGKLTRRLKHEGQEVMLAAGDTFRAAAVEQLQSWGERNQVP 182


>gi|254519404|ref|ZP_05131460.1| flagellar biosynthesis regulator FlhF [Clostridium sp. 7_2_43FAA]
 gi|226913153|gb|EEH98354.1| flagellar biosynthesis regulator FlhF [Clostridium sp. 7_2_43FAA]
          Length = 383

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 138/292 (47%), Gaps = 26/292 (8%)

Query: 25  SLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
           +  +KE + +I  + +R + +  +EE +D+++     + +  ++++E+LT +Y    ++ 
Sbjct: 109 TDNIKEEVKEIKDLLNRVIKNTNKEEEKDIVLEYLKDIDIDDELIKEVLTDKYD---NID 165

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLK 141
                  EL+   +   ++  +         +++VG  GVGKTT I KL+ +++     K
Sbjct: 166 EFKTYFKELLENEIQVCTESLSGK-------VVLVGPTGVGKTTTIAKLAGRLALIEKKK 218

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V L   DT+R  A++QLK +A+  +  F       +      E       +  DV++IDT
Sbjct: 219 VGLITIDTYRIGAVEQLKTYAEIMNIPFKVVITLKEMENAVSE------LEDCDVILIDT 272

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
            GR   N++ ++ +    + +          +  V+  TT    ++ +   ++  G   +
Sbjct: 273 TGRSSKNTMQISELRAFTQKVNA------DHIALVISGTTKNRDIQTIINGYSEIGYEKI 326

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           I+TK+D T+  G +  I+   + P+ ++  G+ + +D+   +  + S +I G
Sbjct: 327 IITKLDETSSYGCIYNIIKKAQKPIAYITTGQNVPDDIRIPLKSEISKLILG 378


>gi|158429530|pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429531|pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429532|pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429533|pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429534|pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429535|pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429536|pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429537|pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
 gi|158429538|pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
          Length = 296

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 97/246 (39%), Gaps = 23/246 (9%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L     A  ++ + V+  + E++  ML    K   W        I++ G  G GKTT + 
Sbjct: 67  LRFSVEAGGLTEENVVGKLQEILCDMLPSADK---WQEPIHSKYIVLFGSTGAGKTTTLA 123

Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---FVCSEIGSDAAALAYEA 185
           KL+   M +   K+     DT+R AA++QLK +A+   A        E    A  L  E 
Sbjct: 124 KLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSE- 182

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                    D + +DTAGR   +   +  + + I         +      VL AT     
Sbjct: 183 --------YDHVFVDTAGRNFKDPQYIDELKETIPF------ESSIQSFLVLSATAKYED 228

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAK 304
           ++ +    +       I TK+D T   G +  I+   KI V F+  G+ +  D++     
Sbjct: 229 MKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDIQTVSPL 288

Query: 305 DFSAVI 310
            F  ++
Sbjct: 289 GFVRML 294


>gi|237755443|ref|ZP_04584068.1| flagellar biosynthesis protein FlhF [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692407|gb|EEP61390.1| flagellar biosynthesis protein FlhF [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 399

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/283 (21%), Positives = 119/283 (42%), Gaps = 20/283 (7%)

Query: 32  ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL 91
           IT+  + + LD      L +LLI+ D+ + VA++IV          +    +       L
Sbjct: 130 ITEEFTGKALD------LINLLIQKDVELTVAKEIVRNACGLEMGSNKLDLKHFTYRESL 183

Query: 92  IHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDT 149
           I  +      K   +  S R  V+  +G  GVGKTT + K++ K+  +   KV + + DT
Sbjct: 184 IEGLEKSFIFKGDIFKDSDRRRVVAFLGPTGVGKTTNLFKVASKLILEENRKVAVVSIDT 243

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           F++ A DQ + + +     F              +         VDVL+IDT GR H + 
Sbjct: 244 FKAGAGDQARSYCNILGIPFQILSDPKKLRETVDD------FDFVDVLLIDTIGRSHYDH 297

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             +  I + +R++          ++ V      + +   ++ +        L  TK+D T
Sbjct: 298 WKLGEIKETLRLI-----DEIEYMMVVSCNWKNKESYNLIQKYRKFFNINYLFFTKIDET 352

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           A  G ++ +    K+P+ ++  G+ +  DL+    +  ++ + 
Sbjct: 353 AYPGTILNLAYKTKLPLTYISTGQNVPEDLKIITPERLASYLL 395


>gi|319649546|ref|ZP_08003702.1| hypothetical protein HMPREF1013_00306 [Bacillus sp. 2_A_57_CT2]
 gi|317398708|gb|EFV79390.1| hypothetical protein HMPREF1013_00306 [Bacillus sp. 2_A_57_CT2]
          Length = 376

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 122/323 (37%), Gaps = 41/323 (12%)

Query: 1   MSNQKVASESLSWIRKLTK---GFASTSLKLK---EGITD---IISSRRLDDGVREELED 51
            S+ K + E +  I  L +     AS++  +    E I     I+  + +D  V++ +  
Sbjct: 81  FSSLKTSDELIREISSLKQMMSSLASSNQAIPVHPEAIRKAQFILDEQEIDKSVQDHVLQ 140

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
            L+                       +     +   + E + K +  +  PF    S   
Sbjct: 141 ALLE---------------KWYLRGANAKDSEIDAWLHEELIKQIEDI--PFE-GISFSK 182

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
             I V G  GVGKTT + K++ +       K      DT+R AAIDQLK +A   +    
Sbjct: 183 KYINVAGPTGVGKTTTLAKMAAECVIKHRKKAAFITADTYRIAAIDQLKTYASILNMPLE 242

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 D    A       + K+ DV++IDTAGR   N   +  +  +I      D    
Sbjct: 243 VCYTIEDFRQAAD------KLKEFDVVLIDTAGRNFRNKQYVEDLKNVI------DFENE 290

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                VL  T+ Q  + ++    ++     LI TK D T+  G +  I+  +K    ++ 
Sbjct: 291 METFLVLSLTSKQKDMEEIYNQFSIIDIDKLIFTKADETSTYGSMYNIIHKYKKGAAYIT 350

Query: 291 VGEGI-NDLEPFVAKDFSAVITG 312
            G+ + +D+     +     + G
Sbjct: 351 NGQDVPDDILMAGPEAIVKQLMG 373


>gi|283955441|ref|ZP_06372939.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793068|gb|EFC31839.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           414]
          Length = 484

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 14/206 (6%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +  ++++VG  GVGKTT + KL+ + +      K  +   DT+R  A++QL  +A    
Sbjct: 280 KKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMK 339

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              + S    D      EA K       +V+++DT G    +   +A   + +     + 
Sbjct: 340 LPIIDSIEPKDLD----EAIK--SLNNCEVILVDTIGNSQYDQSKLAKTKEFL-----MH 388

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            +A   V  V+ A T    L ++    +      LI+TK D T   G +  ++    IP+
Sbjct: 389 SNADIDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPL 448

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVIT 311
            F   G+ + +DLE   +      I 
Sbjct: 449 SFFSTGQEVPDDLEVANSDFLVHCIL 474


>gi|59712443|ref|YP_205219.1| flagellar biosynthesis regulator FlhF [Vibrio fischeri ES114]
 gi|59480544|gb|AAW86331.1| flagellar regulator FlhF, GTP-binding protein [Vibrio fischeri
           ES114]
          Length = 492

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 132/316 (41%), Gaps = 22/316 (6%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +ES   +  +    +S    L+  ++ ++         RE L  +LI+    + +++++ 
Sbjct: 181 NESNEELENMRSEMSSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLEKMGLSEELA 237

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           ++L     A  +       D    + K+L         D   R  +I ++G  GVGKTT 
Sbjct: 238 DQL-----ACYIPEDVPAKDAWPALLKLLAEQIPTSKVDTLSRGGIIALLGPTGVGKTTT 292

Query: 128 IGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           I KL+ +  M     +V L   DTFR  A +QL I+          ++   + A++ Y+ 
Sbjct: 293 IAKLAARAAMEYGPDQVALVTTDTFRIGAQEQLAIYGRIMGCPVRIAKDADELASVLYQ- 351

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                 +   ++++DTAG    +  L   +  ++      +  +  +   V+ AT  +  
Sbjct: 352 -----LRNRRLVLVDTAGMGQRDVRLTEQLDTIME-----NSGSQINSYLVMPATAQRRV 401

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAK 304
           L++          +G I++K+D +   G LI + + + +P+ ++  G+ +  D+     K
Sbjct: 402 LQETIDHFKRIPLSGCILSKIDESLSLGELISVTIENGLPISYIANGQRVPEDIVLAQPK 461

Query: 305 DFSAVITGCLDYGEEK 320
              A     L+   EK
Sbjct: 462 YLVAKANELLEKATEK 477


>gi|122879200|ref|YP_201258.6| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 552

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 99/243 (40%), Gaps = 16/243 (6%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           LT+  A  +     L+    L+  +L         D   R  VI +VG  G GKTT I K
Sbjct: 303 LTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAK 362

Query: 131 LSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           L+++ +       V L   DT R    +QL  +  +       ++       L       
Sbjct: 363 LAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQLGVAVHEADSAESLLDL------F 416

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +   +++IDTAG    +  L A +  +             + L VL A    + L +
Sbjct: 417 ERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-------QQVTSLLVLPANAHFSDLDE 469

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFS 307
           V    A A   G+++TK+D T R G  + +VV H++P+ ++  G+ + +DL    A    
Sbjct: 470 VVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLV 529

Query: 308 AVI 310
             +
Sbjct: 530 LRL 532


>gi|86154015|ref|ZP_01072216.1| flagellar biosynthesis protein flhF [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613495|ref|YP_999790.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167004765|ref|ZP_02270523.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85842429|gb|EAQ59643.1| flagellar biosynthesis protein flhF [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249038|gb|EAQ72000.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 484

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 14/206 (6%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +  ++++VG  GVGKTT + KL+ + +      K  +   DT+R  A++QL  +A    
Sbjct: 280 KKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMK 339

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              + S    D      EA K       +V+++DT G    +   +A   + +     + 
Sbjct: 340 LPIIDSIEPKDLD----EAIK--SLNNCEVILVDTIGNSQYDQSKLAKTKEFL-----MH 388

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            +A   V  V+ A T    L ++    +      LI+TK D T   G +  +V    IP+
Sbjct: 389 SNAEIDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPL 448

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVIT 311
            F  +G+ + +DLE   +      I 
Sbjct: 449 SFFSIGQEVPDDLEVANSDFLVHCIL 474


>gi|205356447|ref|ZP_03223211.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205345634|gb|EDZ32273.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 484

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 14/206 (6%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +  ++++VG  GVGKTT + KL+ + +      K  +   DT+R  A++QL  +A    
Sbjct: 280 KKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMK 339

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              + S    D      EA K       +V+++DT G    +   +A   + +     + 
Sbjct: 340 LPIIDSIEPKDLD----EAIK--SLNNCEVILVDTIGNSQYDQSKLAKTKEFL-----MH 388

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            +A   V  V+ A T Q  L ++    +      LI+TK D T   G +  +V    IP+
Sbjct: 389 SNAEIDVNLVVSANTKQEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPL 448

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVIT 311
            F  +G+ + +DLE   +      I 
Sbjct: 449 SFFSIGQEVPDDLEVANSDFLVHCIL 474


>gi|332533110|ref|ZP_08408979.1| flagellar biosynthesis protein FlhF [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037392|gb|EGI73846.1| flagellar biosynthesis protein FlhF [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 422

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 102/254 (40%), Gaps = 22/254 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL--------IHKMLMPLSKPFNWDFSHRPHVILVVG 118
           V+ L+     K+V+ Q   +   ++        +  M+    +  N +   +  V  +VG
Sbjct: 152 VDRLVGMGIDKEVAQQMACFVPDDVSRKQGWKALLTMVEDQMQTTNNEILRQGGVYALVG 211

Query: 119 VNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
             GVGKTT + KL+          KV L   DT+R  A +QL  +           +  +
Sbjct: 212 PTGVGKTTTVAKLAALGAQKYGADKVALITTDTYRIGAYEQLATYGRIIGCGVKQVKDAN 271

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           + A + Y        +   +++IDTAG    +  L   +  ++R     +         V
Sbjct: 272 ELAEVLYH------LRNKRLVLIDTAGMSQRDLRLTEQLNTLMR-----NQRVDIRSYLV 320

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           L AT   N L++          +G I TK+D +   G +I I + +++P+ +L  G+ + 
Sbjct: 321 LSATAQINVLQETVRHFKKVQLSGCIFTKLDESLSLGEIISIAIQNRLPIGYLTNGQRVP 380

Query: 297 -DLEPFVAKDFSAV 309
            D+    A+     
Sbjct: 381 EDIRVANAEKLVKK 394


>gi|86151220|ref|ZP_01069435.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|157414378|ref|YP_001481634.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|315123669|ref|YP_004065673.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841567|gb|EAQ58814.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|157385342|gb|ABV51657.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747024|gb|ADN90294.1| Flagellar biosynthesis protein flhF [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315017391|gb|ADT65484.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 484

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 14/206 (6%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +  ++++VG  GVGKTT + KL+ + +      K  +   DT+R  A++QL  +A    
Sbjct: 280 KKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMK 339

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              + S    D      EA K       +V+++DT G    +   +A   + +     + 
Sbjct: 340 LPIIDSIEPKDLD----EAIK--SLNNCEVILVDTIGNSQYDQSKLAKTKEFL-----MH 388

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            +A   V  V+ A T    L ++    +      LI+TK D T   G +  ++    IP+
Sbjct: 389 SNAEIDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPL 448

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVIT 311
            F   G+ + +DLE   +      I 
Sbjct: 449 SFFSTGQEVPDDLEVANSDFLVHCIL 474


>gi|148926870|ref|ZP_01810548.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844447|gb|EDK21555.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 484

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 14/206 (6%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +  ++++VG  GVGKTT + KL+ + +      K  +   DT+R  A++QL  +A    
Sbjct: 280 KKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMK 339

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              + S    D      EA K       +V+++DT G    +   +A   + +     + 
Sbjct: 340 LPIIDSIEPKDLD----EAIK--SLNNCEVILVDTIGNSQYDQSKLAKTKEFL-----MH 388

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            +A   V  V+ A T    L ++    +      LI+TK D T   G +  +V    IP+
Sbjct: 389 SNAEIDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPL 448

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVIT 311
            F  +G+ + +DLE   +      I 
Sbjct: 449 SFFSIGQEVPDDLEVANSDFLVHCIL 474


>gi|57237074|ref|YP_178086.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni RM1221]
 gi|57165878|gb|AAW34657.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni RM1221]
 gi|315057505|gb|ADT71834.1| Flagellar biosynthesis protein FlhF [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 484

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 14/206 (6%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +  ++++VG  GVGKTT + KL+ + +      K  +   DT+R  A++QL  +A    
Sbjct: 280 KKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMK 339

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              + S    D      EA K       +V+++DT G    +   +A   + +     + 
Sbjct: 340 LPIIDSIEPKDLD----EAIK--SLNNCEVILVDTIGNSQYDQSKLAKTKEFL-----MH 388

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            +A   V  V+ A T Q  L ++    +      LI+TK D T   G +  +V    IP+
Sbjct: 389 SNAEIDVNLVVSANTKQEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPL 448

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVIT 311
            F  +G+ + +DLE   +      I 
Sbjct: 449 SFFSIGQEVPDDLEVANSDFLVHCIL 474


>gi|86149714|ref|ZP_01067944.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597714|ref|ZP_01100947.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218561749|ref|YP_002343528.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|9297094|sp|O52908|FLHF_CAMJE RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|85839982|gb|EAQ57241.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190018|gb|EAQ93994.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359455|emb|CAL34238.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284925360|gb|ADC27712.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927747|gb|EFV07074.1| SRP54-type protein, GTPase domain protein [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315929661|gb|EFV08839.1| SRP54-type protein, GTPase domain protein [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 484

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 14/206 (6%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +  ++++VG  GVGKTT + KL+ + +      K  +   DT+R  A++QL  +A    
Sbjct: 280 KKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMK 339

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              + S    D      EA K       +V+++DT G    +   +A   + +     + 
Sbjct: 340 LPIIDSIEPKDLD----EAIK--SLNNCEVILVDTIGNSQYDQSKLAKTKEFL-----MH 388

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            +A   V  V+ A T    L ++    +      LI+TK D T   G +  +V    IP+
Sbjct: 389 SNAEIDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPL 448

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVIT 311
            F  +G+ + +DLE   +      I 
Sbjct: 449 SFFSIGQEVPDDLEVANSDFLVHCIL 474


>gi|297569690|ref|YP_003691034.1| flagellar biosynthetic protein FlhF [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925605|gb|ADH86415.1| flagellar biosynthetic protein FlhF [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 391

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 16/244 (6%)

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           R A+    +    +V    +++L  L+ +P   +    P VI +VG  GVGKTT   K++
Sbjct: 142 RMAQRSKARPTPEEVINWRNQILEQLAVRPLQLNGRTEPLVIALVGPTGVGKTTTAAKIA 201

Query: 133 KKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
              S     +V L + D +R  A DQL+ +A                      A  + + 
Sbjct: 202 AWFSLHENARVALLSMDCYRIGATDQLRTYARIMRLPC----EIVLRRQDLQAALHKHRQ 257

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  D++IIDTAG+   +   +  +G+       + P        VL AT  +  +  +  
Sbjct: 258 K--DLIIIDTAGKSPFDEDHIPELGQWFADHGGITP------YLVLSATAKKEDINHIIA 309

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVI 310
            +   G    I+TK+D T     L   +   ++P+  L  G+ +  D  P   K+F   +
Sbjct: 310 TYRPLGVPAAILTKLDETRAYAALCQQMARAELPIACLCTGQKVPEDFLPAD-KNFLKTL 368

Query: 311 TGCL 314
            G  
Sbjct: 369 FGDG 372


>gi|189426334|ref|YP_001953511.1| GTP-binding signal recognition particle SRP54 G- domain [Geobacter
           lovleyi SZ]
 gi|189422593|gb|ACD96991.1| GTP-binding signal recognition particle SRP54 G- domain [Geobacter
           lovleyi SZ]
          Length = 441

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 16/210 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + P +I +VG  GVGKTT   KL+   + + G KV L   D FR  A++QLK +     
Sbjct: 243 KNAPRIIALVGPTGVGKTTTTAKLAAMYALNRGNKVALITMDIFRVGAVEQLKTYTKIMG 302

Query: 167 ADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
               V S       A+   A         D+++IDTAGR H +S  +  +   +    + 
Sbjct: 303 IPLEVASTPKELERAVERHA-------DCDLILIDTAGRSHKDSDKLEEMKGFLETTIQS 355

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           D      +   L ATT    L ++    ++   + ++ TK+D     G ++ +++   + 
Sbjct: 356 D------IYLCLSATTKDRELEEILNRFSIFPISKVVFTKLDECESVGCIVNLLLKANLQ 409

Query: 286 VYFLGVGEGIN-DLEPFVAKDFSAVITGCL 314
           + +   G+ +  D+E   ++  + +I    
Sbjct: 410 IAYFTTGQRVPEDIEVATSEKLAELILKEG 439


>gi|88813216|ref|ZP_01128456.1| GTP-binding signal recognition particle SRP54 [Nitrococcus mobilis
           Nb-231]
 gi|88789538|gb|EAR20665.1| GTP-binding signal recognition particle SRP54 [Nitrococcus mobilis
           Nb-231]
          Length = 439

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 105/250 (42%), Gaps = 24/250 (9%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G  VA+K+ + +           Q  L  ++     +L       + D   R  VI +V
Sbjct: 176 LGADVARKLADHVAE----NTDPEQAWLQALA-----LLRQHLPVADDDIVERGGVIAIV 226

Query: 118 GVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  GVGKTT + KL+ +  +      V L   D FR    +QL+ +A         +   
Sbjct: 227 GPTGVGKTTTVAKLAARFALRHGRRHVALVTTDNFRIGGQEQLRSFARILGIPVHTAHDR 286

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            + AA+       A  +   +++IDTAG  H +  L   +  +          +P     
Sbjct: 287 EELAAVL------ADLRDKQLVLIDTAGMSHRDMRLSEQLQAL------ETADSPIRAYL 334

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+ A T   AL ++         +G I++K+D     G  +  ++ +++PV +LG G+ +
Sbjct: 335 VVSANTQLPALCEIVRGFRKVNPSGCILSKVDEATSLGSALTALLRYRLPVAYLGTGQRV 394

Query: 296 N-DLEPFVAK 304
             DL+P  ++
Sbjct: 395 PEDLQPARSE 404


>gi|34557958|ref|NP_907773.1| flagellar biosynthesis regulator FlhF [Wolinella succinogenes DSM
           1740]
 gi|34483676|emb|CAE10673.1| FLAGELLAR BIOSYNTHESIS PROTEIN FLHF FLAGELLA ASSOCIATED
           GTP-BINDINGPROTEIN [Wolinella succinogenes]
          Length = 467

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 96/228 (42%), Gaps = 19/228 (8%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD---AGLKVMLA 145
            E++ KM+    +           ++++VG  GVGKTT + KL+ + S       KV + 
Sbjct: 246 REVLRKMVYCRQENLESGARK---IVMLVGPTGVGKTTTLAKLAARYSRMMSKNYKVGII 302

Query: 146 AGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
             DT+R  A+DQL  +A +         +      A+          K  D ++IDT G 
Sbjct: 303 TLDTYRIGAVDQLMFYAKKMKLSIDTVVDPTEFVGAI-------NSLKYCDYILIDTVGS 355

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
             ++         M+R     DPH    V  V+ +TT    LR +    +V     LI+T
Sbjct: 356 SQHDK----QKIDMLRSYVNSDPHCSIDVSLVVSSTTKYEDLRDIYHTFSVLNVDTLILT 411

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           K+D T   G +  ++   K PV +L +G+ +  DL    ++     + 
Sbjct: 412 KLDETRGFGNVFSLIHETKKPVSYLSIGQEVPTDLIVGTSEYLVDCLL 459


>gi|332799196|ref|YP_004460695.1| flagellar biosynthetic protein FlhF [Tepidanaerobacter sp. Re1]
 gi|332696931|gb|AEE91388.1| flagellar biosynthetic protein FlhF [Tepidanaerobacter sp. Re1]
          Length = 383

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 133/313 (42%), Gaps = 43/313 (13%)

Query: 30  EGITDIISSRRLDDGVREELEDLL-----------IRSDIGVAV-AQKIVEELLTKRYAK 77
           E +TD +   ++   V EE++++L           I ++ G+ +  +K  + +   + A 
Sbjct: 79  ENLTDFVKIDKIKTDV-EEVKNILNKLCSEQKQQEISTNFGIPLPLKKFYDRMFEMQVAS 137

Query: 78  DV--------------SVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGV 122
           D+              +      ++ +++   ++ L       + S   ++I  VG  GV
Sbjct: 138 DIIHMVISNAANNLTDADMNNKAELYKMVKNEIVSLIDIIEPIELSKEKNIIAFVGPTGV 197

Query: 123 GKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           GKTT I KL+   S     KV +   DTFR  AI+QL+++ D             D   +
Sbjct: 198 GKTTTIAKLAAHFSLYKNKKVAMITADTFRVGAIEQLRLYGDLLEIPVFVVYSFEDVKTI 257

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
                  A     D+L+IDT G   NN +      ++ ++   LD   P+ +  V+ A T
Sbjct: 258 L------ADTNDYDILLIDTMGFSPNNRM------QIKKIKGLLDYINPNEIHIVISAAT 305

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP-IVVTHKIPVYFLGVGEGI-NDLE 299
               L  +   +       +++TK+D T   G L+  I +++   + +L +G+ + +D+E
Sbjct: 306 KNQDLVDILNNYKELQYKKIVVTKLDETKCYGMLLNAISISNGCKLSYLTMGQNVPDDIE 365

Query: 300 PFVAKDFSAVITG 312
              A   + +I G
Sbjct: 366 IASADKIADMILG 378


>gi|308048767|ref|YP_003912333.1| flagellar biosynthetic protein FlhF [Ferrimonas balearica DSM 9799]
 gi|307630957|gb|ADN75259.1| flagellar biosynthetic protein FlhF [Ferrimonas balearica DSM 9799]
          Length = 486

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 118/299 (39%), Gaps = 24/299 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           +    AS    L+  ++ ++   R   + VR  L + L        +A+       ++  
Sbjct: 185 MKAEMASIRQLLQHQVSSLMQQDRARTEPVRAMLTEQLRELGFHKEMAEHF-----SQLV 239

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             +  +   +  + EL+ + L+  ++    D      VI +VG  GVGKTT I KL+ + 
Sbjct: 240 PDEAEIHDAIEYLPELVARSLVTGNESMLNDGG----VIALVGPTGVGKTTTIAKLAARF 295

Query: 136 --SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                  +V L   D +R  A +QL  +          +    +  ++ Y+   +     
Sbjct: 296 VARYGINQVALVTTDNYRIGAQEQLATFGKIMGCPVRSAASVEELESVIYQLRSRR---- 351

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
             +++IDTAG    +  L+  + ++ R  +      P     VL AT     L++     
Sbjct: 352 --LILIDTAGMGQRDMRLVEQLDQLTRSTR-----LPIKPYLVLSATAQYRVLKETVERF 404

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
                 G I+TK+D     G  + +++ +++PV +L  G+ +  DL     +  +    
Sbjct: 405 RQIDLAGCILTKLDEAHNIGEALSVLIQNRLPVCYLTDGQRVPEDLRTADPRYLAQRAL 463


>gi|145298361|ref|YP_001141202.1| flagellar biosynthesis protein FlhF [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851133|gb|ABO89454.1| flagellar biosynthesis protein FlhF [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 472

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 118/280 (42%), Gaps = 23/280 (8%)

Query: 46  REELEDLLIR--SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           RE +  LLI+    IG        ++L      +D+S+ + +  ++E++   L    K  
Sbjct: 193 REPMRALLIKELKKIGFD--DAFADQLAG-LIPEDMSIHQAMAQLAEVLTAQL----KIS 245

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIW 161
             D   +   + ++G  GVGKTT I KL+ +        +V L   D +R  A +QL+ +
Sbjct: 246 EDDILRQGGAVALLGPTGVGKTTTIAKLAARFAMKYGAEQVALITTDNYRIGAHEQLQTY 305

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                          DA  LA   ++    +   +++IDTAG    +  L   +  +++ 
Sbjct: 306 GRIMGCPV---RQVRDAEELANALYQFRHRR---LVLIDTAGVGQRDIRLTEQLDTLVKN 359

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            K            V+ AT+ +  +++          +G I+TK+D +   G +I + + 
Sbjct: 360 AKVRI-----RSYLVMSATSQRRVMQEAVDHFRRIPLSGCILTKLDESLNLGEVINVCIQ 414

Query: 282 HKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLDYGEEK 320
           + +P+ ++  G+ +  D++   A        G L+   E+
Sbjct: 415 NALPISYITDGQRVPEDIQVANAAQLVGAAMGSLEQETEE 454


>gi|307720634|ref|YP_003891774.1| flagellar biosynthetic protein FlhF [Sulfurimonas autotrophica DSM
           16294]
 gi|306978727|gb|ADN08762.1| flagellar biosynthetic protein FlhF [Sulfurimonas autotrophica DSM
           16294]
          Length = 426

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 94/239 (39%), Gaps = 13/239 (5%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           L     K       +    + I + ++P+ +        +  VI++VG  GVGKTT I K
Sbjct: 184 LEHMPLKMRENSSTVKRYFQTILRKMVPIRREAIPSVGTK-KVIMLVGPTGVGKTTSIAK 242

Query: 131 LSKKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           L+ + S       KV L   DT+R  A++QL  +A                 + A E+ K
Sbjct: 243 LAARYSFLMEKKYKVGLVVLDTYRIGAVEQLMQYARMMKLGIETVVDP-PEFSNALESLK 301

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                  D ++IDT G    +      I K+   L   +      V+ V+ ++     L+
Sbjct: 302 Y-----CDYILIDTMGSSPYD---RVKIEKIYECLNANNTEYNVDVVLVMPSSIKYEDLK 353

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                 +  G   L+ TK+D T   G +  +    K P+ +  VG+ + +     + DF
Sbjct: 354 VTYDNFSTLGVDTLMFTKLDETMGFGNIFSLAYETKKPISYFSVGQEVPEDLVCASSDF 412


>gi|187478178|ref|YP_786202.1| flagellar biosynthesis regulator FlhF [Bordetella avium 197N]
 gi|115422764|emb|CAJ49292.1| flagellar biosynthesis protein [Bordetella avium 197N]
          Length = 818

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 119/307 (38%), Gaps = 27/307 (8%)

Query: 19  KGFASTSLKLKEGITDII--SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
               +    L+  +  ++  + +   + V   L   L+ +   + + + ++E L      
Sbjct: 151 AAIEALRGALESRMDGLLWGAGKPTREPVNASLFRSLLEAGFSMPLVRALLERL-----P 205

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-- 134
            ++   R        +   L  L     +  +    V+ ++G  GVGKTT + KL+ +  
Sbjct: 206 PEIDAARARDWARNEVLTHLPVLRDENAFLAAGG--VLALLGPTGVGKTTTLAKLAARCV 263

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             +   +V +   D FR  A++QL+I+                  A   +A  +  ++K 
Sbjct: 264 AREGRDQVAMLTTDNFRIGALEQLQIYGRLMGVPARSVRDA----AELRDALAELGSRK- 318

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
            +++IDT G    +  +      +               L VL+A +  + L +V   + 
Sbjct: 319 -IILIDTTGISQRDRNVAEQAALL------CGGGRQVRRLLVLNAASQGDTLDEVAHAYR 371

Query: 255 V---AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDFSAVI 310
                   G I+TK+D   R G  +   + H++P++++  G+ + + L P  A+      
Sbjct: 372 HGVGEDVVGCIITKLDEATRLGPALDTAIRHRLPIHYISNGQKVPENLVPAQAQPLVDHA 431

Query: 311 TGCLDYG 317
             CLD+ 
Sbjct: 432 LACLDHA 438


>gi|315127304|ref|YP_004069307.1| flagellar biosynthesis regulator FlhF [Pseudoalteromonas sp.
           SM9913]
 gi|315015818|gb|ADT69156.1| flagellar biosynthesis regulator FlhF [Pseudoalteromonas sp.
           SM9913]
          Length = 496

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 102/254 (40%), Gaps = 22/254 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL--------IHKMLMPLSKPFNWDFSHRPHVILVVG 118
           ++ L+     K+V+ Q   +   ++        +  M+    +  N +   +  V  +VG
Sbjct: 226 IDRLVGMGIEKNVAEQMACFVPDDVSRQQGWKALLNMVEDQMQTTNNEILRQGGVFALVG 285

Query: 119 VNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
             GVGKTT + KL+          KV L   DT+R  A +QL  +           +  +
Sbjct: 286 PTGVGKTTTVAKLAALGAQKYGADKVALITTDTYRIGAYEQLATYGRIIGCGVKQVKDAN 345

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           + A + Y        +   +++IDTAG    +  L   +  ++R     +         V
Sbjct: 346 ELAEVLYH------LRNKRLVLIDTAGMSQRDLRLTEQLNTLMR-----NQRVDIRSYLV 394

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           L AT   N L++          +G I TK+D +   G +I I + +++P+ +L  G+ + 
Sbjct: 395 LSATAQINVLQETVRHFKKVQLSGCIFTKLDESLSLGEIISIAIQNRLPIGYLTNGQRVP 454

Query: 297 -DLEPFVAKDFSAV 309
            D+    A+     
Sbjct: 455 EDIRVANAEKLVKK 468


>gi|330502781|ref|YP_004379650.1| flagellar biosynthesis regulator FlhF [Pseudomonas mendocina NK-01]
 gi|328917067|gb|AEB57898.1| flagellar biosynthesis regulator FlhF [Pseudomonas mendocina NK-01]
          Length = 436

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 103/253 (40%), Gaps = 22/253 (8%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++ + LL K        Q     ++ L H +  P  +P          VI +VG  G+GK
Sbjct: 175 ELTQALLGKVAGVAEPRQAWRMLLAHLAHAIKTPKVEPLEEGG-----VIALVGPAGMGK 229

Query: 125 TTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA-AAL 181
           TT + KL+ +        +V L + D+FR  A +QLK             + G     AL
Sbjct: 230 TTTLAKLAARYVLKYGAQQVALVSMDSFRIGAQEQLKTLGRILGVSVTQIDPGQSLLQAL 289

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A  A K+       V+++DTAG   N+  L   +  +     +           VL AT+
Sbjct: 290 APLAKKR-------VVLVDTAGLPGNDPALRLQLESLASARIKAKN------YLVLAATS 336

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEP 300
               L+     +   G  G I+TK+D  A  G ++ + +  ++PV ++  G  I +DL+ 
Sbjct: 337 QSQVLKAAYHSYKRCGLAGCILTKLDEAASLGEVLGLAIGQQLPVAYVTDGPRIPDDLQV 396

Query: 301 FVAKDFSAVITGC 313
             +    +   G 
Sbjct: 397 PRSHQLVSRAVGL 409


>gi|308513335|ref|NP_954097.2| flagellar biosynthetic protein FlhF [Geobacter sulfurreducens PCA]
 gi|41152916|gb|AAR36447.2| flagellar biosynthetic protein FlhF, putative [Geobacter
           sulfurreducens PCA]
 gi|298507083|gb|ADI85806.1| flagellar biogenesis protein FlhF [Geobacter sulfurreducens KN400]
          Length = 451

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 15/215 (6%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158
           S P      + P +I +VG  GVGKTT I KL+   +   G +  L   D FR  A++QL
Sbjct: 246 SGPLTVK-KNGPRIIALVGPTGVGKTTTIAKLAAHYALREGHRAALITIDNFRVGAVEQL 304

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           K ++         +   ++  A              ++++IDTAGR H +S  +  +   
Sbjct: 305 KTYSRIMGVPVEVAATAAELEA------AIELHSDKELILIDTAGRSHKDSEKIEELKGF 358

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +     +       +   L ATT    + ++     V   + +I TK+D +   G ++  
Sbjct: 359 LESRFAI------EIHLCLAATTRDREVLEIVERFGVLSVSRVIFTKLDESESYGSIVNA 412

Query: 279 VVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITG 312
            +  K P+ +   G+ +  DLE       + ++ G
Sbjct: 413 HLRTKFPLSYFTTGQRVPEDLEIATPGRLAGLVLG 447


>gi|311105928|ref|YP_003978781.1| flagellar biosynthesis protein FlhF [Achromobacter xylosoxidans A8]
 gi|310760617|gb|ADP16066.1| flagellar biosynthesis protein FlhF [Achromobacter xylosoxidans A8]
          Length = 910

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 115/307 (37%), Gaps = 31/307 (10%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLT 72
           L    ++    L+  +  ++   R   G RE     L   L+ +     + + +VE L  
Sbjct: 212 LQDAISALRGALESRMDGLLWGGRQGPG-REPAGAALFRSLLDAGFSTKLVRTLVERL-- 268

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
               + ++ +  L      +   L  L     +       V  +VG  GVGKTT + KL+
Sbjct: 269 ---PQGMTQEAALSWARNELVTHLPVLRSEDEFLAGG---VYALVGPTGVGKTTTLAKLA 322

Query: 133 KK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            +    +   +V +   D FR  A++QL+I+               +   +       A+
Sbjct: 323 ARCVAREGREQVAMLTTDNFRIGALEQLQIYGRLMGVPAHSVRDAGELRRIL------AE 376

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
                +++IDT G    +  +      +    K      P   L VL+A +  + L +V 
Sbjct: 377 LGSRKIVLIDTTGISQRDRQVAEQAAMLCNAGK------PVRRLLVLNAASQGDTLDEVA 430

Query: 251 MFHAV---AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDF 306
             +         G I+TK+D   R G  +   + H++P++++ VG+ + + +E   A   
Sbjct: 431 HAYRNGVGEDVAGCIITKLDEATRLGAALDTAIRHRLPIHYMSVGQKVPEHMELARADVL 490

Query: 307 SAVITGC 313
                  
Sbjct: 491 IDRAFSM 497


>gi|256088727|ref|XP_002580477.1| signal recognition particle receptor alpha subunit (sr-alpha)
           [Schistosoma mansoni]
 gi|238666057|emb|CAZ36716.1| signal recognition particle receptor alpha subunit (sr-alpha),
           putative [Schistosoma mansoni]
          Length = 658

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 64/336 (19%), Positives = 134/336 (39%), Gaps = 50/336 (14%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +   L +G      ++  G   +++   +     E+L + L+  ++ +++A ++   + 
Sbjct: 336 GFASSLLRGL-----RITGGSGRVLTREDIAPC-LEQLRERLVGKNVAMSIADRVCSNVA 389

Query: 72  TKRYAKDVSVQRVLYD-----VSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVN 120
            +     +     +Y      + E+  ++L+       L    +     RP+ I+  GVN
Sbjct: 390 DRLVGTSLGTFERIYPRVRASLEEVCSRILVSGRRVDVLRDALDARTQGRPYSIVFCGVN 449

Query: 121 GVGKTTVIGK--------------LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           GVGK+T + K              +    S    KV   +   F+   +++ K      +
Sbjct: 450 GVGKSTNLAKVCHLTKLLLQIFVFICAYQSCFCAKVPNTSMGRFKQTILNEFKRHPIAQA 509

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           +  V + +  +A  + +E   Q + +  DV+++DTAGR+ +N  LM  +  +I+      
Sbjct: 510 SGRVDNAMAFEAKGIGFE--CQTRDRHFDVVLVDTAGRMQDNEPLMRALASLIQT----- 562

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGL 275
            + P  VL V +A  G  A+ Q+  F+                G+++TK D    + G  
Sbjct: 563 -NQPDLVLFVGEALVGNEAVDQLVKFNQSLADHSYSDRPRCIDGIVLTKFDTIDDKVGAA 621

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           I +      P+ F+G G+  +DL           + 
Sbjct: 622 ISMACISNQPIVFVGTGQTYSDLRQLSVNAVVKALM 657


>gi|330907618|ref|XP_003295869.1| hypothetical protein PTT_03573 [Pyrenophora teres f. teres 0-1]
 gi|311332427|gb|EFQ96034.1| hypothetical protein PTT_03573 [Pyrenophora teres f. teres 0-1]
          Length = 1411

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 134/297 (45%), Gaps = 38/297 (12%)

Query: 19  KGFASTSL-KLKEGITDIISSRRLD-DGV---REELEDLLIRSDIGVAVAQKIVEELLTK 73
            G   +SL  +     +++  + L  + +    + +E+ L+R ++    A ++ E +   
Sbjct: 322 SGLVGSSLGAIGGLFRNVVGGKTLTKEDLAKPLKGMEEHLLRKNVAREAAVRLCESVERD 381

Query: 74  RYAKDVS-----VQRVLYDVSELIHKMLMPLSK-------PFNWDFSHRPHVILVVGVNG 121
                        +     + + + K+L P S              + RP+V+ +VGVNG
Sbjct: 382 LVGIKTPNFTTIEKTFKASMEKALTKILTPTSSLDLLREIQHTNSTTTRPYVLSIVGVNG 441

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---------SADFVCS 172
           VGK+T + K++  +     +V++AA DTFRS A++QL++  DR            +    
Sbjct: 442 VGKSTNLSKIAFFLLQNHHRVLIAAADTFRSGAVEQLRVHVDRLKELSQREGGQVELFEK 501

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
             G DAA +A +A   A     ++++IDTAGR HN+  LM+ + K  ++        P  
Sbjct: 502 GYGKDAANIAADAVTFATKNNFNIVLIDTAGRRHNDQRLMSSLEKFGKLAN------PDK 555

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGGGLIPIVVTHKIP 285
           +L V +A  G +++ Q   F+A  G      G I++K D    G  L+  V   K P
Sbjct: 556 ILMVGEALVGTDSVAQARNFNASFGVGRTLDGFIISKCDTV--GDMLLTDVFREKTP 610


>gi|256088725|ref|XP_002580476.1| signal recognition particle receptor alpha subunit (sr-alpha)
           [Schistosoma mansoni]
 gi|238666056|emb|CAZ36715.1| signal recognition particle receptor alpha subunit (sr-alpha),
           putative [Schistosoma mansoni]
          Length = 655

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 64/336 (19%), Positives = 134/336 (39%), Gaps = 50/336 (14%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +   L +G      ++  G   +++   +     E+L + L+  ++ +++A ++   + 
Sbjct: 333 GFASSLLRGL-----RITGGSGRVLTREDIAPC-LEQLRERLVGKNVAMSIADRVCSNVA 386

Query: 72  TKRYAKDVSVQRVLYD-----VSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVN 120
            +     +     +Y      + E+  ++L+       L    +     RP+ I+  GVN
Sbjct: 387 DRLVGTSLGTFERIYPRVRASLEEVCSRILVSGRRVDVLRDALDARTQGRPYSIVFCGVN 446

Query: 121 GVGKTTVIGK--------------LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           GVGK+T + K              +    S    KV   +   F+   +++ K      +
Sbjct: 447 GVGKSTNLAKVCHLTKLLLQIFVFICAYQSCFCAKVPNTSMGRFKQTILNEFKRHPIAQA 506

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           +  V + +  +A  + +E   Q + +  DV+++DTAGR+ +N  LM  +  +I+      
Sbjct: 507 SGRVDNAMAFEAKGIGFE--CQTRDRHFDVVLVDTAGRMQDNEPLMRALASLIQT----- 559

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGL 275
            + P  VL V +A  G  A+ Q+  F+                G+++TK D    + G  
Sbjct: 560 -NQPDLVLFVGEALVGNEAVDQLVKFNQSLADHSYSDRPRCIDGIVLTKFDTIDDKVGAA 618

Query: 276 IPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           I +      P+ F+G G+  +DL           + 
Sbjct: 619 ISMACISNQPIVFVGTGQTYSDLRQLSVNAVVKALM 654


>gi|188576805|ref|YP_001913734.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188576998|ref|YP_001913927.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188521257|gb|ACD59202.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521450|gb|ACD59395.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 551

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 98/243 (40%), Gaps = 16/243 (6%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           LT+  A  +     L+    L+  +L         D   R  VI +VG  G GKTT I K
Sbjct: 302 LTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAK 361

Query: 131 LSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           L+++ +       V L   DT R    +QL  +  +       ++       L       
Sbjct: 362 LAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDL------F 415

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +   +++IDTAG    +  L A +  +             + L VL A    + L +
Sbjct: 416 ERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-------QQVTSLLVLPANAHFSDLDE 468

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFS 307
           V    A A   G+++TK+D T   G  + +VV H++P+ ++  G+ + +DL    A    
Sbjct: 469 VVRRFAHAKPQGVVLTKLDETGSFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLV 528

Query: 308 AVI 310
             +
Sbjct: 529 LRL 531


>gi|207346488|gb|EDZ72970.1| YDR292Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 595

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 130/304 (42%), Gaps = 56/304 (18%)

Query: 33  TDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD- 87
             ++ ++ +++     V E+L   LI  ++    A  + +++         +    + + 
Sbjct: 298 KHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENT 357

Query: 88  ----VSELIHKMLMP-----LSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKL 131
               +++ + ++L P     L +      S +       P+V  +VGVNGVGK+T + KL
Sbjct: 358 ARESLTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKL 417

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------------- 175
           +  +     KV++ A DTFRS A++QL++  +  +     S +                 
Sbjct: 418 AFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVEL 477

Query: 176 --------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                        +A +A K ++ +  D++++DTAGR HN+  LM+ +          D 
Sbjct: 478 FEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSF------ADQ 531

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARG-GGLIPIVVTH 282
             P  ++ V +A  G ++++Q + F+   G        I++K D      G ++ +V   
Sbjct: 532 AKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFIISKCDTVGEMLGTMVNMVYAT 591

Query: 283 KIPV 286
            IP+
Sbjct: 592 GIPI 595


>gi|56460227|ref|YP_155508.1| flagellar biosynthesis regulator FlhF [Idiomarina loihiensis L2TR]
 gi|56179237|gb|AAV81959.1| Flagellar biosynthetic protein FlhF [Idiomarina loihiensis L2TR]
          Length = 444

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 88/223 (39%), Gaps = 17/223 (7%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRS 152
           +L       + D   R   + +VG  GVGKTT I KL+ +        KV L   DTFR 
Sbjct: 211 LLEGQLNTTSDDILTRGGAVALVGPTGVGKTTTIAKLAARYAQRHGADKVALITTDTFRI 270

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A +QL+ +          ++   + A  A  A +Q       +++IDTAG    +  L 
Sbjct: 271 GASEQLQTYGRIIGCPVKVAKNAQELAD-ALLALRQKS-----LILIDTAGMGQRDKRLN 324

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + ++I+     +         VL AT+    L            +G I TK+D     
Sbjct: 325 EQLSQLIQ-----NSRLRIRPYLVLSATSQSQVLMDAVKQFKALPLSGCIFTKLDECLSL 379

Query: 273 GGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDF---SAVIT 311
           G  I + + H +PV +L  G+ +  D+    A      +  + 
Sbjct: 380 GESISVAIEHGLPVGYLTNGQQVPEDIRVADANFMVAEAERLL 422


>gi|311068162|ref|YP_003973085.1| flagellar biosynthesis regulator FlhF [Bacillus atrophaeus 1942]
 gi|310868679|gb|ADP32154.1| flagellar biosynthesis regulator FlhF [Bacillus atrophaeus 1942]
          Length = 368

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 17/244 (6%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L     A D++ + V+  + +++ + L P  +   W  +     I++ G  G GKTT + 
Sbjct: 139 LRDSISAGDLTEENVVRKLQDVLCEALPPKDR---WQEAISSQYIVLFGSTGAGKTTTLA 195

Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+   M D   K+     DT+R AA++QLK +A+   A         +    A E F +
Sbjct: 196 KLAASSMLDKHKKIAFITTDTYRIAAVEQLKTYAELLQAPMEVCYTKEEFLQ-AKETFSE 254

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
                 D + IDTAGR       +  + + I     +          VL AT+    ++ 
Sbjct: 255 -----YDHVFIDTAGRNFKEQQYIEELKETIPFENSIQS------FLVLSATSKYEDMKD 303

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFS 307
           +    +       I TK D TA  G +  I+   KI   F+  G+ +  D++    +DF 
Sbjct: 304 IVKRFSSVPVNQFIFTKADETASLGSVFHILAESKIGAGFITNGQNVPEDIQSVSPQDFV 363

Query: 308 AVIT 311
            ++ 
Sbjct: 364 RMLM 367


>gi|237666591|ref|ZP_04526576.1| flagellar biosynthetic protein FlhF [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|237657790|gb|EEP55345.1| flagellar biosynthesis protein FlhF [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 434

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 130/287 (45%), Gaps = 46/287 (16%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           LKE + ++     +D+   +++        I +A+              +DVS   +L D
Sbjct: 187 LKEQLNNL----DIDEDFYDDI--------INMAL----------DYKDEDVSETEILRD 224

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAA 146
           + E    +L+  +K  N         ++++G  GVGKTT I KL+ +++     KV L  
Sbjct: 225 IFE--RDILV-TNKGLNGK-------VVLIGPTGVGKTTTIAKLAGRLALVEKKKVGLIT 274

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DT+R  AI+QLK +A+  +  F    I       A E+ +       DV++IDT GR  
Sbjct: 275 IDTYRIGAIEQLKTYAEIMNIPF-KVVITIKEMENAIESME-----DCDVVLIDTTGRSS 328

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            N++ ++ +   ++         P  V  V+ ATT    ++ +   ++  G   +I+TK+
Sbjct: 329 KNTMQISELRAFVQ------KANPDHVNMVISATTKNKDIKGILKGYSELGYESVIVTKL 382

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           D T   G +  I      P+ F+ +G+ + +D++    ++ +  I G
Sbjct: 383 DETTAYGSIYNISRNSNKPISFITIGQNVPDDIKLSTKEELTRFILG 429


>gi|258514020|ref|YP_003190242.1| flagellar biosynthesis regulator FlhF [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777725|gb|ACV61619.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 438

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 61/256 (23%), Positives = 115/256 (44%), Gaps = 17/256 (6%)

Query: 50  EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
             +L+ +D+   + ++++E+    RY    S +  +  V+  +   +  L +P   D S 
Sbjct: 178 RQILLDTDMDEVLVERLLED-ANDRYDSGRSDRDEMLKVN--LINKITGLIEPAYQDISF 234

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-VMLAAGDTFRSAAIDQLKIWADRTSAD 168
              V   +G  GVGKTT + KL+ + S    K + L   DT+R  A++QLK + +     
Sbjct: 235 G-KVYAFIGPTGVGKTTTLAKLAAQFSLFYQKDIALITIDTYRIGAVEQLKTYGEIIGVS 293

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                   D   +        + K  D+++IDTAG   NN++ +  +   + V+      
Sbjct: 294 LDVVMTPEDLHRVIM------RHKDKDIILIDTAGHPSNNAVYVQELKGFLDVI-----S 342

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P  +  VL ATT    + ++         + +I TK+D T   G ++ I+    IP+Y+
Sbjct: 343 LPLDIFLVLSATTKNKDMFKIIDEFGRKDISKIIFTKIDETESLGAMLNIIYRTNIPIYY 402

Query: 289 LGVGEGI-NDLEPFVA 303
           +  G+ + +D+E    
Sbjct: 403 VTDGQSVPDDIEQVYP 418


>gi|6969593|gb|AAF33830.1|AF226282_4 flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae]
          Length = 561

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 98/243 (40%), Gaps = 16/243 (6%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           LT+  A  +     L+    L+  +L         D   R  VI +VG  G GKTT I K
Sbjct: 312 LTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAK 371

Query: 131 LSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           L+++ +       V L   DT R    +QL  +  +       ++       L       
Sbjct: 372 LAQRFAAQHTPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDL------F 425

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +   +++IDTAG    +  L A +  +             + L VL A    + L +
Sbjct: 426 ERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-------QQVTSLLVLPANAHFSDLDE 478

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFS 307
           V    A A   G+++TK+D T   G  + +VV H++P+ ++  G+ + +DL    A    
Sbjct: 479 VVRRFAHAKPQGVVLTKLDETGSFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLV 538

Query: 308 AVI 310
             +
Sbjct: 539 LRL 541


>gi|332297779|ref|YP_004439701.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Treponema brennaborense DSM 12168]
 gi|332180882|gb|AEE16570.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Treponema brennaborense DSM 12168]
          Length = 432

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 124/310 (40%), Gaps = 28/310 (9%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
                   L   +  I      +  +R+ +E+LL  ++   +  + +   L ++   + +
Sbjct: 107 AIQKQLETLNRKLDTISVDTESEPSIRK-IEELLESNEFSASYIRNMSARLRSEFSLEQL 165

Query: 80  SVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           S    +   V+E I +    +    +  F  RP V+++VG  GVGKTT + KL+ +    
Sbjct: 166 SDFDAVQAKVAEWIGE---GIRLRLDDGFKRRPKVLILVGPTGVGKTTTVAKLAAQYRFQ 222

Query: 139 G------LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                  L + +   D FR AA +QL  + +        +E   D   +         + 
Sbjct: 223 KGDNDERLSIRMVTIDRFRIAAQEQLAKYGEHMDIPTTAAESADDIRDIL-----AIHSG 277

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           K+DV++IDT G   ++   +  + K++ V     P     V   + A T  + LR +   
Sbjct: 278 KLDVMLIDTIGYSPHDYESIGRMRKILDV-----PGLKPEVYLTVSAATKASDLRDIMRN 332

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           +       +I+TK D T   G ++ ++     PV ++  G+ +  D+E      F     
Sbjct: 333 YETFDYKAVIVTKYDETNHIGNVLSVLAEKDKPVAYISTGQKVPRDIERASVVKF----- 387

Query: 312 GCLDYGEEKI 321
             L   + KI
Sbjct: 388 -MLKLTDFKI 396


>gi|166712014|ref|ZP_02243221.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 557

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 96/241 (39%), Gaps = 16/241 (6%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +  A  +     L+    L+  +L         D   R  VI +VG  G GKTT I KL+
Sbjct: 310 RDVALQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLA 369

Query: 133 KKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++     A   V L   DT R    +QL  +  +       ++                +
Sbjct: 370 QRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLD------LLER 423

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +   +++IDTAG    +  L A +  +             + L VL A    + L +V 
Sbjct: 424 LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-------QQVTSLLVLPANAHFSDLDEVV 476

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAV 309
              A A   G+++TK+D T R G  + +VV H++P+ ++  G+ + +DL    A      
Sbjct: 477 RRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLR 536

Query: 310 I 310
           +
Sbjct: 537 L 537


>gi|237796084|ref|YP_002863636.1| flagellar biosynthesis protein FlhF [Clostridium botulinum Ba4 str.
           657]
 gi|229260865|gb|ACQ51898.1| flagellar biosynthesis protein FlhF [Clostridium botulinum Ba4 str.
           657]
          Length = 408

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 141/317 (44%), Gaps = 28/317 (8%)

Query: 3   NQKVASESLSWIRKLTKG--FASTSLKLKE--GITDIISSRRLDDGVREELEDLLIRSDI 58
            + + S+S S+  K +KG  F+ T   + E   +  I+      +    +    L+    
Sbjct: 108 KEILESKSESFQNKSSKGKEFSETKDLMNEIRDLKKIVKDIGKSEKSYADENSSLVNFFK 167

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            + + ++++E+++ K+             +  +I           +   +    V ++VG
Sbjct: 168 DLDLEEELIEKII-KKVGNLEENLEEREKIKRVIED-------TIDVRVNSVGKVTVLVG 219

Query: 119 VNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGS 176
             GVGKTT I KL+ K+S     KV L   DT+R  A++QLK +AD  +  F V   +  
Sbjct: 220 PTGVGKTTTIAKLAGKLSLIDKKKVGLITIDTYRIGAVEQLKTYADIMNIPFKVVFSMKD 279

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
              A+             DV+++DT GR   N + ++ +   I  +K        SV  V
Sbjct: 280 MEKAII-------DLDYCDVILVDTTGRSSKNMMQISELRAFIEKIKEK------SVHLV 326

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI- 295
           + A+T    +  +   +++     +I+TK+D T+  G ++ ++   K P+ F+  G+ + 
Sbjct: 327 ISASTKNKDVETIIRGYSILEYENIIITKLDETSIYGSILTVLDKGKKPISFITTGQDVP 386

Query: 296 NDLEPFVAKDFSAVITG 312
           +D++    ++ + ++ G
Sbjct: 387 DDIKEGNKEEIAKIVLG 403


>gi|170759882|ref|YP_001787965.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum A3
           str. Loch Maree]
 gi|169406871|gb|ACA55282.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 408

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/316 (22%), Positives = 136/316 (43%), Gaps = 33/316 (10%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLL-IRSDIG----------V 60
           +    +   S S   +         ++  +   + +E+ DL  I  DIG           
Sbjct: 104 LDSYKEILESKSESFQN---KSFKGKKFSETKDLMDEIRDLKKIVKDIGKSEKSYTDESS 160

Query: 61  AVAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           ++ +   + +L  +   + +     L +  E   K+   +    +   +    V ++VG 
Sbjct: 161 SLVKFFKDLDLEEEFIEEIIKKVGNLEENLEEREKIKRVIEDTIDVRVNSVGKVTVLVGP 220

Query: 120 NGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSD 177
            GVGKTT I KL+ K+S     KV L   DT+R  A++QLK +AD  +  F V   I   
Sbjct: 221 TGVGKTTTIAKLAGKLSLIDKKKVGLITIDTYRIGAVEQLKTYADIMNIPFKVVFSIKDM 280

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
             A+             DV+++DT GR   N + ++ +   I  +K        SV  V+
Sbjct: 281 EKAIV-------DLDYCDVILVDTTGRSSKNMMQISELRAFIEKIKEK------SVHLVI 327

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-N 296
            A+T    +  +   +++     +I+TK+D T+  G ++ I+   K P+ F+  G+ + +
Sbjct: 328 SASTKNKDIETIIKGYSILEYENIIITKLDETSIYGSVLTILDKGKKPISFITTGQDVPD 387

Query: 297 DLEPFVAKDFSAVITG 312
           D++    ++ + ++ G
Sbjct: 388 DIKEGNKEEIAKIVLG 403


>gi|91792699|ref|YP_562350.1| flagellar biosynthesis regulator FlhF [Shewanella denitrificans
           OS217]
 gi|91714701|gb|ABE54627.1| GTP-binding signal recognition particle SRP54, G-domain [Shewanella
           denitrificans OS217]
          Length = 462

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 118/299 (39%), Gaps = 24/299 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGV 60
           + QK +  + +    L    AS    L   ++ ++   ++  D +   LE  L+ ++   
Sbjct: 145 TPQKHSKHNQADFDALKDEMASLRNLLTHQVSALMKDQKKRTDPMGAMLESKLLAAEFSA 204

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +A K+            +S      D+   + + L  L      D   R  V+  VG  
Sbjct: 205 PIAAKL----------AGLSQHYTPVDLVRALPQTLANLLDNQGDDIVRRGGVVAFVGPT 254

Query: 121 GVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GVGKTT + KL+ +        +V L   D +R  A +QL  +          +   ++ 
Sbjct: 255 GVGKTTSLAKLAARFAAQHGPEQVALITTDHYRIGAFEQLATYGKIMGCPVKQAHDLAEL 314

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             + Y+       +   +++IDTAG    +  L   +  +       +   P     VL 
Sbjct: 315 EQIIYQ------FRNRKLVLIDTAGMGQRDMRLYQQLDNL-----TANSKIPIRSYLVLS 363

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           AT  +  L+           +G+++TK+D +    G + +++ +++P+ ++  G+ + +
Sbjct: 364 ATGQRRVLQDAVTHFKRIPLSGVVLTKLDESVSIAGALSVLIQNELPLSYVTDGQRVPE 422


>gi|313142558|ref|ZP_07804751.1| flagellar biosynthesis regulator FlhF [Helicobacter canadensis MIT
           98-5491]
 gi|313131589|gb|EFR49206.1| flagellar biosynthesis regulator FlhF [Helicobacter canadensis MIT
           98-5491]
          Length = 252

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 17/227 (7%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLA 145
            E++ KM+   ++  N +     +++++VG  GVGKTT + KL+ + S   +   KV + 
Sbjct: 33  REVLRKMVYARTENLNSNVK---NIMMLVGPTGVGKTTTLAKLAARYSRMLNKNYKVGII 89

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             DT+R  A+DQL  +A +            +    A ++ K       D ++IDT G  
Sbjct: 90  TLDTYRIGAVDQLMFYAKKMKLSIDTVVDTEEFIN-ALDSLKY-----CDYILIDTVGSS 143

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            ++   +  +   +      DP+    V  V+ ATT    L+ +    +  G   LI TK
Sbjct: 144 QHDRSKLESLKSFVNA----DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTLIFTK 199

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           +D T   G +  ++   K    +  +G+ +  DL    +      + 
Sbjct: 200 LDETHSYGNIFSLIYETKKATSYFSIGQEVPNDLMVATSDFLIDCLL 246


>gi|283955508|ref|ZP_06373003.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792969|gb|EFC31743.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 484

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 14/206 (6%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +  ++++VG  GVGKTT + KL+ + +      K  +   DT+R  A++QL  +A    
Sbjct: 280 KKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMK 339

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              + S    D      EA K       +V+++DT G    +   ++   + +     + 
Sbjct: 340 LPIIDSIEPKDLD----EAIK--SLNNCEVILVDTIGNSQYDQSKLSKTKEFL-----MH 388

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            +A   V  V+ A T    L ++    +      LI+TK D T   G +  ++    IP+
Sbjct: 389 SNAEIDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPL 448

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVIT 311
            F   G+ + +DLE   +      I 
Sbjct: 449 SFFSTGQEVPDDLEVANSDFLVHCIL 474


>gi|257457598|ref|ZP_05622765.1| SRP54-type protein, GTPase domain [Treponema vincentii ATCC 35580]
 gi|257444984|gb|EEV20060.1| SRP54-type protein, GTPase domain [Treponema vincentii ATCC 35580]
          Length = 448

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/305 (19%), Positives = 120/305 (39%), Gaps = 26/305 (8%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELE--------DLLIRSDIGVAVAQKIVEELLTK 73
             +  KL E +  +++     +  + ++E         LL  +D   +  +++   L  +
Sbjct: 133 EKSLDKLAETVERLVAEMEKKNAAQTDVEHTHIVKVQKLLEENDFSPSYIKELSARLKDE 192

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
               ++        V + + ++L         D   +  V+L+VG  GVGKTT + K++ 
Sbjct: 193 LSYTEI---ENFLTVQKKLFELLAESISIKPADDQPKTRVVLLVGPTGVGKTTTLAKIAV 249

Query: 134 KMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +         L+V +   D +R  A  Q+K + +      + +   ++         ++A
Sbjct: 250 QYIRKNSEHPLRVKVITIDNWRIGAAYQMKRYCELMGIPLMVASNPAEVRKYMALYREEA 309

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV+ IDT GR   +   ++ +      L          V   + A T  N +R++
Sbjct: 310 -----DVICIDTIGRSPKDREKISTMQNYFAEL-----GDDAEVYLTVCAGTRINDIREI 359

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
              +AV     LI+TK D T+  G L  I+    IP+ ++  G+ +  D      + F  
Sbjct: 360 MKEYAVFKYKSLIITKFDETSYIGNLFSIISETNIPITYITAGQEVPQDFMLADIETFLK 419

Query: 309 VITGC 313
            + G 
Sbjct: 420 KLKGF 424


>gi|217077811|ref|YP_002335529.1| flagellar biosynthesis regulator FlhF [Thermosipho africanus
           TCF52B]
 gi|217037666|gb|ACJ76188.1| flagellar biosynthesis protein FlhF [Thermosipho africanus TCF52B]
          Length = 378

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 16/208 (7%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DT 149
           ++ ++ +P  K    D + +   ++ VG  GVGKTT + KL+ KMS    K +     DT
Sbjct: 157 VLSEVFLPFIKTEVPDLTGK---VMFVGPTGVGKTTTLAKLAAKMSINNHKKVGILTLDT 213

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AA +QLK +A         +    +A        +       D++ IDTAGR   N 
Sbjct: 214 YRIAATEQLKTYATLMDIPMRVAYTPKEAK------IELEAMADFDLVFIDTAGRSQKND 267

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
           + M  I  M  ++       P  +  V+      N +  +    +    T +I+TKMD T
Sbjct: 268 LQMNEIKAMSEIIN------PDFIFLVVGMQYRSNDVELITKKFSSVSPTHVILTKMDET 321

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           +  G  + I      P+ F+  G+ + D
Sbjct: 322 SSLGHFLNIGHYINSPIIFVTNGQRVPD 349


>gi|224419051|ref|ZP_03657057.1| flagellar biosynthesis regulator FlhF [Helicobacter canadensis MIT
           98-5491]
          Length = 265

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 17/231 (7%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLK 141
                E++ KM+   ++  N +     +++++VG  GVGKTT + KL+ + S   +   K
Sbjct: 42  KRYFREVLRKMVYARTENLNSNVK---NIMMLVGPTGVGKTTTLAKLAARYSRMLNKNYK 98

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V +   DT+R  A+DQL  +A +            +    A ++ K       D ++IDT
Sbjct: 99  VGIITLDTYRIGAVDQLMFYAKKMKLSIDTVVDTEEFIN-ALDSLKY-----CDYILIDT 152

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
            G   ++   +  +   +      DP+    V  V+ ATT    L+ +    +  G   L
Sbjct: 153 VGSSQHDRSKLESLKSFVNA----DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTL 208

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           I TK+D T   G +  ++   K    +  +G+ +  DL    +      + 
Sbjct: 209 IFTKLDETHSYGNIFSLIYETKKATSYFSIGQEVPNDLMVATSDFLIDCLL 259


>gi|182418485|ref|ZP_02949779.1| flagellar biosynthesis protein FlhF [Clostridium butyricum 5521]
 gi|182377867|gb|EDT75411.1| flagellar biosynthesis protein FlhF [Clostridium butyricum 5521]
          Length = 448

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 130/287 (45%), Gaps = 46/287 (16%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           LKE + ++     +D+   +++        I +A+              +DVS   +L D
Sbjct: 201 LKEQLNNL----DIDEDFYDDI--------INMAL----------DYKDEDVSETEILRD 238

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAA 146
           + E    +L+  +K  N         ++++G  GVGKTT I KL+ +++     KV L  
Sbjct: 239 IFE--RDILV-TNKGLNGK-------VVLIGPTGVGKTTTIAKLAGRLALVEKKKVGLIT 288

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            DT+R  AI+QLK +A+  +  F    I       A E+ +       DV++IDT GR  
Sbjct: 289 IDTYRIGAIEQLKTYAEIMNIPF-KVVITIKEMENAIESME-----DCDVVLIDTTGRSS 342

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
            N++ ++ +   ++         P  V  V+ ATT    ++ +   ++  G   +I+TK+
Sbjct: 343 KNTMQISELRAFVQ------KANPDHVNMVISATTKNKDIKGILKGYSELGYESVIVTKL 396

Query: 267 DGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           D T   G +  I      P+ F+ +G+ + +D++    ++ +  I G
Sbjct: 397 DETTAYGSIYNISRNSNKPISFITIGQNVPDDIKLSTKEELTRFILG 443


>gi|77359756|ref|YP_339331.1| flagellar biosynthesis regulator FlhF [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874667|emb|CAI85888.1| putative Flagellar biosynthetic protein FlhF(Flagella associated
           GTP-binding protein) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 496

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 102/254 (40%), Gaps = 22/254 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL--------IHKMLMPLSKPFNWDFSHRPHVILVVG 118
           ++ L+     K+V+ Q   +   ++        +  M+    +  N +   +  V  +VG
Sbjct: 226 IDRLVGMGIDKEVAEQMACFVPEDVPRQQGWKALLTMVEDQMQTTNNEILRQGGVYALVG 285

Query: 119 VNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
             GVGKTT + KL+          KV L   DT+R  A +QL  +           +  +
Sbjct: 286 PTGVGKTTTVAKLAALGAQKYGADKVALITTDTYRIGAYEQLATYGRIIGCGVKQVKDAN 345

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           + A + Y        +   +++IDTAG    +  L   +  ++R     +         V
Sbjct: 346 ELAEVLYH------LRNKRLVLIDTAGMSQRDLRLTEQLNTLMR-----NQRVDIRNYLV 394

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           L AT   N L++          +G I TK+D +   G +I I + +++P+ +L  G+ + 
Sbjct: 395 LSATAQINVLQETVRHFKKVQLSGCIFTKLDESLSLGEIISIAIQNRLPIGYLTNGQRVP 454

Query: 297 -DLEPFVAKDFSAV 309
            D+    A+     
Sbjct: 455 EDIRVANAEKLVKK 468


>gi|258511393|ref|YP_003184827.1| flagellar biosynthetic protein FlhF [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478119|gb|ACV58438.1| flagellar biosynthetic protein FlhF [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 381

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 17/212 (8%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM-LAA 146
           + E I   L  L+ P       R  V+  VG  GVGKTT I K++     AG + + L  
Sbjct: 164 LIEAIQSDLGALAHPAPIRRDSR--VVAFVGPTGVGKTTTIAKIAALHVLAGQRRVGLLT 221

Query: 147 GDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
            DTFR AA++QLK +AD  +    +  E    ++ALA         +  D++++DTAGR 
Sbjct: 222 TDTFRIAAVEQLKTYADILNVPIAIADEPEDVSSALA-------SLQSCDLVLVDTAGRN 274

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             N   +    +M      L P     VL V+   T      +V            I TK
Sbjct: 275 FLNPASIEQTKRM------LTPIEADEVLLVVSLATKPTDALKVANMAKPLSVDKFIFTK 328

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           +D T   G +  +V   ++P+ ++  G+ + D
Sbjct: 329 LDETESVGMIPSLVALCQLPIAYVTTGQNVPD 360


>gi|90406804|ref|ZP_01214996.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
 gi|90312041|gb|EAS40134.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
          Length = 481

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 111/276 (40%), Gaps = 27/276 (9%)

Query: 46  REELEDLLIR----SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           +E +  +LI+    +     +A ++   +     A +           + +  +L     
Sbjct: 210 KEPIRAMLIKWLSKAGFSDDIADQLASYVPEDASATE---------AHQYMRTLLQDKIY 260

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLK 159
             N +   +   I ++G  GVGKTT I KL+ +        +V L   DT+R  A +QL 
Sbjct: 261 VGNNEILSQGGAIALLGPTGVGKTTTIAKLAAQFAMKYGADQVALITTDTYRIGAHEQLA 320

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            +          ++   + + + Y+  ++       +++IDTAG    +  L   +  ++
Sbjct: 321 TYGKIMGCSVRVAKDADELSTILYQFREKR------LVLIDTAGMGQRDIRLSEQLDTLM 374

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           R     +         V+ +T+ +  + +          +G I+TK+D +   G ++ ++
Sbjct: 375 R-----NNSVNIKSYLVISSTSQRRIVEEALEHFKRIPLSGCILTKIDESIGLGEVLSVM 429

Query: 280 VTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCL 314
           + H +P+ ++  G+ +  D+E    +   A     +
Sbjct: 430 MQHALPIAYMTTGQRVPEDIEIANVERLIASTLEMM 465


>gi|2772967|gb|AAC08878.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772969|gb|AAC08879.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772971|gb|AAC08880.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772973|gb|AAC08881.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772975|gb|AAC08882.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772977|gb|AAC08883.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772979|gb|AAC08884.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772981|gb|AAC08885.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772983|gb|AAC08886.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772985|gb|AAC08887.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772987|gb|AAC08888.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772989|gb|AAC08889.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772991|gb|AAC08890.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772993|gb|AAC08891.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772995|gb|AAC08892.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772997|gb|AAC08893.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2772999|gb|AAC08894.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773001|gb|AAC08895.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773003|gb|AAC08896.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773005|gb|AAC08897.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773007|gb|AAC08898.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773009|gb|AAC08899.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773011|gb|AAC08900.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773013|gb|AAC08901.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773015|gb|AAC08902.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773017|gb|AAC08903.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773019|gb|AAC08904.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773021|gb|AAC08905.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773025|gb|AAC08907.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773027|gb|AAC08908.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773029|gb|AAC08909.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773031|gb|AAC08910.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773033|gb|AAC08911.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773035|gb|AAC08912.1| regulatory protein PilA [Neisseria meningitidis]
 gi|2773037|gb|AAC08913.1| regulatory protein PilA [Neisseria meningitidis]
          Length = 144

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/143 (44%), Positives = 93/143 (65%), Gaps = 1/143 (0%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           PL KP     +  P VI++ G+NG GKTT IGKL+K     G  V+LAAGDTFR+AA +Q
Sbjct: 2   PLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQ 61

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+ W +R +   + S+   D+AA+ ++A + A+A+ +D+++ DTAGRL     LM  I K
Sbjct: 62  LQAWGERNNVTVI-SQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKK 120

Query: 218 MIRVLKRLDPHAPHSVLQVLDAT 240
           + RVL++  P APH ++ VLDA 
Sbjct: 121 VKRVLQKAMPDAPHEIIVVLDAN 143


>gi|304316888|ref|YP_003852033.1| flagellar biosynthetic protein FlhF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778390|gb|ADL68949.1| flagellar biosynthetic protein FlhF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 337

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 112/284 (39%), Gaps = 24/284 (8%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           + +          +  +++L D LI   +   + + + E +              +  + 
Sbjct: 73  KSLLREFKKSENREDDKKDLRDKLIYIGVDEDLTKILTEGISE-------ITDDNIKILQ 125

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGD 148
           + I   + P   P   +  +    ++ +G  GVGKTT I K++  +       V+L   D
Sbjct: 126 KRIVNFIGP---PKKINCLNEKKRVVFIGPTGVGKTTTIAKIASHLILREKKNVLLITAD 182

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            FR A  +QLKI+ +             D   L      +++    D+++IDTAGR H +
Sbjct: 183 IFRIAGAEQLKIYGEILGVPVKVVNNIFDLNRL------ESEISNYDIVLIDTAGRSHTD 236

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           S  M  +   ++        +   +   L ATT  +  +++   +       L+ TK+D 
Sbjct: 237 SRKMQELKTFLQY------GSYDDIYLCLSATTKNSDAKKIIKSYDFINDYNLLFTKLDE 290

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
           T     ++  +   K P+ ++  G+ + +D+    +K  +  I 
Sbjct: 291 TDNYSVILNSIYYSKKPISYVTTGQIVPDDICLADSKMIAQNIL 334


>gi|322806974|emb|CBZ04544.1| flagellar biosynthesis protein FlhF [Clostridium botulinum H04402
           065]
          Length = 408

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 128/301 (42%), Gaps = 44/301 (14%)

Query: 36  ISSRRLDD--GVREELEDLL-IRSDIG-------------------VAVAQKIVEELLTK 73
              ++  +   + +E+ DL  I  DIG                   + + ++ +E+++ K
Sbjct: 123 FKGKKFSESKDLMDEIRDLKKIVKDIGKSEKSYADENSSLVKFFKELDLEEEFIEKII-K 181

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           +             +  +I           +   +    V ++VG  GVGKTT I KL+ 
Sbjct: 182 KVGNLEENLEEREKIKRVIED-------AIDVRVNSVGKVTVLVGPTGVGKTTTIAKLAG 234

Query: 134 KMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K+S     KV L   DT+R  A++QLK +AD  +  F          ++           
Sbjct: 235 KLSLIDKKKVGLITIDTYRIGAVEQLKTYADIMNIPF------KVVFSIKDMEKAIIDLD 288

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             DV+++DT GR   N + ++ +   I  +K        SV  V+ A+T    +  +   
Sbjct: 289 YCDVILVDTTGRSSKNMMQISELRAFIEKIKEK------SVHLVISASTKNKDIETIVKG 342

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
           +++     +I+TK+D T+  G ++ I+   K P+ F+  G+ + +D++    ++ + ++ 
Sbjct: 343 YSILEYENIIITKLDETSIYGSILTILDKGKNPISFITTGQDVPDDIKEGNKEEIAKIVL 402

Query: 312 G 312
           G
Sbjct: 403 G 403


>gi|330828814|ref|YP_004391766.1| flagellar biosynthesis protein FlhF [Aeromonas veronii B565]
 gi|328803950|gb|AEB49149.1| Flagellar biosynthesis protein FlhF [Aeromonas veronii B565]
          Length = 474

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 100/245 (40%), Gaps = 14/245 (5%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--S 136
           +     ++     + ++L    K    +   +   + ++G  GVGKTT I KL+ +    
Sbjct: 223 IPEDMSIHQAMAQLAEVLTAQLKISEDEIMRQGGAVALLGPTGVGKTTTIAKLAARFAMK 282

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               +V L   D +R  A +QL+ +               DA  LA   ++    +   +
Sbjct: 283 YGAEQVALITTDNYRIGAHEQLQTYGRIMGCPV---RQVRDAEELANALYQFRHRR---L 336

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDTAG    +  L   +  +++  K            V+ AT+ +  +++        
Sbjct: 337 VLIDTAGVGQRDIRLTEQLDTLVKNAKVRI-----RSYLVMSATSQRRVMQEAVDHFRRI 391

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLD 315
             +G I+TK+D +   G +I + + + +P+ ++  G+ +  D++   A        G L+
Sbjct: 392 PLSGCILTKLDESLNLGEVINVCIQNSLPISYITDGQRVPEDIQVANAAQLVGAAMGSLE 451

Query: 316 YGEEK 320
              E+
Sbjct: 452 RETEE 456


>gi|330976013|gb|EGH76079.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 442

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 21/223 (9%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-- 135
           D   Q     ++ L   + +P  +P          VI +VG  G+GKTT + KL+ +   
Sbjct: 194 DEPRQAWRMLLAHLARMIAVPEVEPLEEGG-----VIAMVGPAGMGKTTTLAKLAARYVL 248

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                 + L + D+FR  A +QLK      +      + G        +A +    K+  
Sbjct: 249 KYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVTHIDPGQSLV----QALEPLLRKR-- 302

Query: 196 VLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           V++IDTAG   ++  L   +  +  R +K  +         VL  T+ +  L      + 
Sbjct: 303 VVLIDTAGLQASDPALRMQLESLAGRGIKSRN-------YLVLATTSQKQVLTAAYHSYK 355

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             G  G I+TK+D TA  G ++ + ++H++PV +L  G  I D
Sbjct: 356 RCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPD 398


>gi|289678964|ref|ZP_06499854.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           syringae FF5]
          Length = 321

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 21/223 (9%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-- 135
           D   Q     ++ L   + +P  +P          VI +VG  G+GKTT + KL+ +   
Sbjct: 73  DEPRQAWRMLLAHLARMIAVPEVEPLEEGG-----VIAMVGPAGMGKTTTLAKLAARYVL 127

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                 + L + D+FR  A +QLK      +      + G        +A +    K+  
Sbjct: 128 KYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVTHIDPGQSLV----QALEPLLRKR-- 181

Query: 196 VLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           V++IDTAG   ++  L   +  +  R +K  +         VL  T+ +  L      + 
Sbjct: 182 VVLIDTAGLQASDPALRMQLESLAGRGIKSRN-------YLVLATTSQKQVLTAAYHSYK 234

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             G  G I+TK+D TA  G ++ + ++H++PV +L  G  I D
Sbjct: 235 RCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPD 277


>gi|218288315|ref|ZP_03492614.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241674|gb|EED08847.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 381

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 17/212 (8%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM-LAA 146
           + E I   L  L+ P       R  V+  VG  GVGKTT I K++     AG + + L  
Sbjct: 164 LIEAIQSDLGALAHPAPIRRDSR--VVAFVGPTGVGKTTTIAKIAALHVLAGQRRVGLLT 221

Query: 147 GDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
            DTFR AA++QLK +AD  +    +  +    ++ALA         +  D++++DTAGR 
Sbjct: 222 TDTFRIAAVEQLKTYADILNVPIAIADQPEDASSALA-------SLQSCDLVLVDTAGRN 274

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             N   +    +M      L P     VL V+   T      +V            I TK
Sbjct: 275 FLNPASIEQTKRM------LTPIEADEVLLVVSLATKPTDALKVANMAKPLSVDKFIFTK 328

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           +D T   G +  +V   ++P+ ++  G+ + D
Sbjct: 329 LDETESVGMIPSLVALCQLPIAYVTTGQNVPD 360


>gi|209695724|ref|YP_002263654.1| flagellar biosynthesis regulator FlhF [Aliivibrio salmonicida
           LFI1238]
 gi|208009677|emb|CAQ79976.1| flagellar biosynthesis protein FlhF [Aliivibrio salmonicida
           LFI1238]
          Length = 484

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 117/278 (42%), Gaps = 19/278 (6%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + +++++ ++L     A  +       D    + K+L         
Sbjct: 208 REPLRAMLIKRLEKMGLSEELADQL-----ACYIPEDTEPKDAWASLLKLLAEQIPTTKV 262

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  ++ ++G  GVGKTT I KL+ +  M     +V L   DTFR  A +QL I+  
Sbjct: 263 DTLARGGIVALLGPTGVGKTTTIAKLAARAAMEYGPDQVALVTTDTFRIGAQEQLAIYGR 322

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++   + A + Y+       +   ++++DTAG    +  L   +  ++    
Sbjct: 323 IMGCPVRIAKDADELATVLYQ------LRNRRLILVDTAGMGQRDVRLTEQLDTLME--- 373

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                +  +   V+ AT  +  L++          +G I++K+D +   G LI + + + 
Sbjct: 374 --HSGSQINSYLVMPATAQRRVLQETIDHFKRIPLSGCILSKIDESLSLGELISVTIENG 431

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLDYGEEK 320
           +P+ ++  G+ +  D+     K   A     L+   EK
Sbjct: 432 LPISYIANGQRVPEDIVLAQPKYLVAKANELLEKATEK 469


>gi|148266120|ref|YP_001232826.1| GTP-binding signal recognition particle [Geobacter uraniireducens
           Rf4]
 gi|146399620|gb|ABQ28253.1| GTP-binding signal recognition particle SRP54, G- domain [Geobacter
           uraniireducens Rf4]
          Length = 447

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 108/271 (39%), Gaps = 28/271 (10%)

Query: 57  DIGVAVAQKIVEELLTKRYAKD-----VSVQRVLYDVSELIHKMLMPLSKPFN------- 104
           D+     + + +EL ++    D     + + R   ++ E I  +   L   F        
Sbjct: 184 DLSEEALELLAKELRSEEVGADGIHSLLELIRPAAELGEEIEALRERLVDAFANVIKCSG 243

Query: 105 -WDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIW 161
                     I+ +VG  GVGKTT I KL+   + + G +V +   D FR  AI+QLK +
Sbjct: 244 PLRLKKNGARIMAIVGPTGVGKTTTIAKLAAMYALNRGARVAMVTTDNFRVGAIEQLKTY 303

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           +         +    +   +       A+    D+++IDTAGR   +   +  +   +  
Sbjct: 304 SKIMDVPLEVAATAKELETVL------AKHADKDLILIDTAGRSPKDREKLEELKVYLES 357

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
              +           + ATT    +  +    +V   T L+ TK+D +   G ++   V 
Sbjct: 358 HPAI------ETYLCISATTRDREMNDIVANFSVLPITRLLFTKLDESESYGCIVNAQVR 411

Query: 282 HKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           +K P+ +   G+ +  D+E   A+  + ++ 
Sbjct: 412 NKYPLSYFTTGQKVPEDIEVATARKLANLVL 442


>gi|134294345|ref|YP_001118080.1| flagellar biosynthesis regulator FlhF [Burkholderia vietnamiensis
           G4]
 gi|134137502|gb|ABO53245.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Burkholderia vietnamiensis G4]
          Length = 596

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 27/260 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L +   A+  S ++       ++   L  L         
Sbjct: 301 LTKHLFSAGFSAQLVRMLVDNLPSGDGAQ--SFEQAAEWAQSVLAANLPVLESE--DALM 356

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 357 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 416

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D       A   ++ +   +++IDT G    +  L   I  +        
Sbjct: 417 VPVHAVKDAGDL------ALALSELRNKHIVLIDTIGMSQRDRALSDQIAMLH------G 464

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG---------TTGLIMTKMDGTARGGGLIP 277
            +AP   L +L+AT+  + L +V   +  AG           G I+TK+D     GG++ 
Sbjct: 465 ANAPVQRLLLLNATSHGDTLNEVVQAYRSAGEHPHGPTPDLAGCILTKLDEATHLGGVLD 524

Query: 278 IVVTHKIPVYFLGVGEGIND 297
            V+ +K+PV+++  G+ + +
Sbjct: 525 TVIRYKLPVHYVSTGQKVPE 544


>gi|224373371|ref|YP_002607743.1| flagellar biosynthesis regulator FlhF [Nautilia profundicola AmH]
 gi|223588735|gb|ACM92471.1| flagellar biosynthesis protein flhf flagella associated
           gtp-bindingprotein [Nautilia profundicola AmH]
          Length = 416

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 15/224 (6%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD---AGLKVMLAAGD 148
           + K ++P+         H+  +++ VG  GVGKTT I KL+ + +       KV +   D
Sbjct: 199 LLKKMVPVRVEREVRPPHK-KIMMFVGPTGVGKTTTIAKLAARYAYKLSQRHKVGIITLD 257

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T+R  A++QL  +A             SD              +  D ++IDT G   ++
Sbjct: 258 TYRIGAVEQLMTYAKMMRLPIETVVDPSDFEDALN------SLRHNDYILIDTVGSSQHD 311

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
              +  +   ++V    D  A  ++  VL A T    L  +    ++      + TK+D 
Sbjct: 312 KEKIEKLKSFLKV----DTFAEININLVLSAVTKYEDLVDIYKNFSILPIDTFVFTKLDE 367

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
           T   G +  +++  K PV +  +G+ + +DL    A      I 
Sbjct: 368 TKTYGNIFSLLLDTKKPVSYFSIGQEVPDDLMEAGADYLLKGIL 411


>gi|167464147|ref|ZP_02329236.1| flagellar biosynthesis regulator FlhF [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382373|ref|ZP_08056280.1| flagellar biosynthesis regulator FlhF-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153726|gb|EFX46101.1| flagellar biosynthesis regulator FlhF-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 460

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 20/254 (7%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-----HVILVVGV 119
           K +EELL +  +     Q       EL   +   L   FN D S  P      +I  VG 
Sbjct: 214 KWIEELLNQADSAAAGAQTTWTP-DELRQSVASQLKDWFNRDGSPSPVSRTAKMIHFVGP 272

Query: 120 NGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
            GVGKTT I KL+  ++     K      DT+R +A++QL+ +A+             D 
Sbjct: 273 TGVGKTTTIAKLAAEQVLKHHKKAGFITSDTYRISAVEQLRTYANILGVPLEVVFSPQDL 332

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
              A+EA +      VDV+ +DTAGR     + ++ +  +++               VL 
Sbjct: 333 PR-AFEALQ-----DVDVIFMDTAGRNFRKELAVSELNALLQSCGET------ETYLVLS 380

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
            TT    +R +       G   ++ TKMD TA  G L+ +    ++P  +L  G+ + +D
Sbjct: 381 LTTKYEDIRVITENFIKFGVDKVLFTKMDETATYGTLVNLKRDFQLPFSYLTDGQNVPDD 440

Query: 298 LEPFVAKDFSAVIT 311
           +          ++ 
Sbjct: 441 ITLADEDKIVELLL 454


>gi|255023711|ref|ZP_05295697.1| SRP receptor alpha-subunit [Listeria monocytogenes FSL J1-208]
          Length = 145

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/131 (49%), Positives = 89/131 (67%)

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D AA+ ++A + A+A+K DVL+ DTAGRL N   LM  + K+ RV+ R  P+APH VL V
Sbjct: 3   DPAAVMFDAVQAAKARKADVLLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLV 62

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDATTGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE ++
Sbjct: 63  LDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMD 122

Query: 297 DLEPFVAKDFS 307
           DL+ F A ++ 
Sbjct: 123 DLQAFDANEYV 133


>gi|78042670|ref|YP_359857.1| flagellar biosynthesis regulator FlhF [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77994785|gb|ABB13684.1| flagellar biosynthesis protein FlhF [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 350

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 114/249 (45%), Gaps = 17/249 (6%)

Query: 50  EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
           ++ L++ ++   + ++I+ EL    + ++V+ +       E + + L+ L KP+  +   
Sbjct: 100 QERLLKLELAPDIVEQILLELQD--FLEEVAPEE--TSGVERVKEYLINLIKPYYENIQD 155

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            P    ++G  GVGKTT + K++ +++      +     DTFR  A++QLKI+       
Sbjct: 156 FPLK-ALIGPTGVGKTTTLAKIAGRLAIHEEKPIRFITLDTFRVGAVEQLKIYGKYLGTT 214

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
              +    +     + A ++      + + IDTAGR       +  +   +  +K+    
Sbjct: 215 VKVAGSPMEL----WRAVQKQNEG--ETIFIDTAGRPSKKQNQIQELAGFLEAVKKE--- 265

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
               +  V+ AT       ++    +  G    I+TK+D T + G LI ++V  K P+ +
Sbjct: 266 --KDIYLVISATVKPEDAEKIAKDFSPCGFNKFIVTKIDETDKFGVLINLIVKFKKPIVY 323

Query: 289 LGVGEGIND 297
           LGVG+ + D
Sbjct: 324 LGVGQNVPD 332


>gi|21242679|ref|NP_642261.1| flagellar biosynthesis regulator FlhF [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108150|gb|AAM36797.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 566

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 16/243 (6%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           LT+  A  +     L+    L+  +L         D   R  VI +VG  G GKTT I K
Sbjct: 317 LTRDIALQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAK 376

Query: 131 LSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           L+++     A   V L   DT R    +QL  +  +       ++               
Sbjct: 377 LAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLD------LL 430

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +   +++IDTAG    +  L A +  +             + L VL A    + L +
Sbjct: 431 ERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-------QQVTSLLVLPANAHFSDLDE 483

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFS 307
           V    A A   G+++TK+D T R G  + +VV H++P+ ++  G+ + +DL    A    
Sbjct: 484 VVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLV 543

Query: 308 AVI 310
             +
Sbjct: 544 LRL 546


>gi|289666122|ref|ZP_06487703.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 561

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 96/241 (39%), Gaps = 16/241 (6%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +  A  +     L+    L+  +L         D   R  VI +VG  G GKTT I KL+
Sbjct: 314 RDVALQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLA 373

Query: 133 KKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++     A   V L   DT R    +QL  +  +       ++                +
Sbjct: 374 QRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLE------LLER 427

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +   +++IDTAG    +  L A +  +             + L VL A    + L +V 
Sbjct: 428 LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-------QQVTSLLVLPANAHFSDLDEVV 480

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAV 309
              A A   G+++TK+D T R G  + +VV H++P+ ++  G+ + +DL    A      
Sbjct: 481 RRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLR 540

Query: 310 I 310
           +
Sbjct: 541 L 541


>gi|330972454|gb|EGH72520.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 442

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 21/223 (9%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-- 135
           D   Q     ++ L   + +P  +P          VI +VG  G+GKTT + KL+ +   
Sbjct: 194 DEPRQAWRMLLAHLARMIAVPEVEPLEEGG-----VIAMVGPAGMGKTTTLAKLAARYVL 248

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                 + L + D+FR  A +QLK      +      + G        +A +    K+  
Sbjct: 249 KYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVTHIDPGQSLV----QALEPLLRKR-- 302

Query: 196 VLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           V++IDTAG   ++  L   +  +  R +K  +         VL  T+ +  L      + 
Sbjct: 303 VVLIDTAGLQASDPALRMQLESLAGRGIKSRN-------YLVLATTSQKQVLTAAYHSYK 355

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             G  G I+TK+D TA  G ++ + ++H++PV +L  G  I D
Sbjct: 356 RCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPD 398


>gi|207091835|ref|ZP_03239622.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 455

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 220 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 273

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++                +   A +  
Sbjct: 274 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEA------VIDIKDFAKEIE 327

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 328 ALEYCDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 381

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 382 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 441

Query: 309 VIT 311
            + 
Sbjct: 442 CML 444


>gi|66046668|ref|YP_236509.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257375|gb|AAY38471.1| GTP-binding signal recognition particle SRP54, G-domain
           [Pseudomonas syringae pv. syringae B728a]
          Length = 442

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 21/223 (9%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-- 135
           D   Q     ++ L   + +P  +P          VI +VG  G+GKTT + KL+ +   
Sbjct: 194 DEPRQAWRMLLAHLARMIAVPEVEPLEEGG-----VIAMVGPAGMGKTTTLAKLAARYVL 248

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                 + L + D+FR  A +QLK      +      + G        +A +    K+  
Sbjct: 249 KYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVTHIDPGQSLV----QALEPLLRKR-- 302

Query: 196 VLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           V++IDTAG   ++  L   +  +  R +K  +         VL  T+ +  L      + 
Sbjct: 303 VVLIDTAGLQASDPALRMQLESLAGRGIKSRN-------YLVLATTSQKQVLTAAYHSYK 355

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             G  G I+TK+D TA  G ++ + ++H++PV +L  G  I D
Sbjct: 356 RCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPD 398


>gi|206603137|gb|EDZ39617.1| flagellar biosynthesis protein FlhF [Leptospirillum sp. Group II
           '5-way CG']
          Length = 393

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 10/212 (4%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIW 161
            +        VIL+ G  GVGKTT I KL+   +   G KV L   DT+R  A++QL+I+
Sbjct: 187 LDRSSKKGAQVILLAGPTGVGKTTTIAKLAAGFTLKHGKKVRLINLDTYRIGALEQLRIY 246

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            D        +        +     +       D++++DTAG     +   A +   I  
Sbjct: 247 GDLMGLPVDVAGTPERFLEI----LEAGSVSPEDLILVDTAGMSSRET---AKLKPFIDG 299

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                PH   +V  VL A+   + L              LI+TK+D T   G + P +  
Sbjct: 300 ALSR-PHLDLNVSLVLAASAKTDDLDDALERFMPLSLRSLILTKLDETNCLGSVYPFLSR 358

Query: 282 HKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
             +PV ++  G+ + +D+E       S  I G
Sbjct: 359 APVPVSYVTTGQRVPDDIEVAHPGKLSQWILG 390


>gi|222053728|ref|YP_002536090.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Geobacter sp. FRC-32]
 gi|221563017|gb|ACM18989.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Geobacter sp. FRC-32]
          Length = 450

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 115/285 (40%), Gaps = 23/285 (8%)

Query: 32  ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL 91
           + ++     L D   E L + L   ++G      ++E +       +      L  + E 
Sbjct: 179 VKNLADDCELSDEALELLANELRSEEVGTDSIHALLELIRPAAELGE-----ELEALRER 233

Query: 92  IHKMLMPLSK---PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAG 147
           +      + K   P        P ++  VG  GVGKTT I KL+   + + G +V +   
Sbjct: 234 LVDAFAGIIKCSGPLRL-RKTGPRIMATVGPTGVGKTTTIAKLAAMYALNRGARVAMVTT 292

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D FR  A++QLK ++         +    +  A+       A+    D+++IDTAGR   
Sbjct: 293 DNFRVGAVEQLKTYSKIMDVPLEVAATAKELEAVL------AKHADKDLILIDTAGRSPK 346

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +   +  +   +     +           + ATT    + ++   +++   T L+ TK+D
Sbjct: 347 DREKLEELKVYLESCPGI------ETYLCISATTRDREMNEIVAQYSLLPITRLLFTKLD 400

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
            +   G ++   V ++ P+ +   G+ +  D+E   A+  + ++ 
Sbjct: 401 ESESYGCIVNAQVRNRFPLSYFTTGQKVPEDIEVATARKLANLVL 445


>gi|117618453|ref|YP_855919.1| flagellar biosynthesis protein FlhF [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559860|gb|ABK36808.1| flagellar biosynthesis protein FlhF [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 473

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 115/280 (41%), Gaps = 23/280 (8%)

Query: 46  REELEDLLIR--SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           RE +  LLI+    IG        ++L      +D+S+ + +  ++E++   L       
Sbjct: 194 REPMRALLIKELKKIGFD--DAFADQLAG-LIPEDMSIHQAMAQLAEVLAAQLKISEDEI 250

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIW 161
                    V L+ G  GVGKTT I KL+ +        +V L   D +R  A +QL+ +
Sbjct: 251 ---LRQGGAVALL-GPTGVGKTTTIAKLAARFAMKYGAEQVALITTDNYRIGAHEQLQTY 306

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                          DA  LA   ++    +   +++IDTAG    +  L   +  +++ 
Sbjct: 307 GRIMGCPV---RQVRDAEELANALYQFRHRR---LVLIDTAGVGQRDIRLTEQLDTLVKN 360

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            K            V+ AT+ +  +++          +G I+TK+D +   G +I + + 
Sbjct: 361 AKVRI-----RSYLVMSATSQRRVMQEAVDHFRRIPLSGCILTKLDESLNLGEVINVCIQ 415

Query: 282 HKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLDYGEEK 320
           + +P+ ++  G+ +  D++   A        G L+   E+
Sbjct: 416 NALPISYITDGQRVPEDIQVANAAQLVGAAMGSLERETEE 455


>gi|302185380|ref|ZP_07262053.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           syringae 642]
          Length = 442

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 21/223 (9%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-- 135
           D   Q     ++ L   + +P  +P          VI +VG  G+GKTT + KL+ +   
Sbjct: 194 DEPRQAWRMLLAHLARMIAVPEVEPLEEGG-----VIAMVGPAGMGKTTTLAKLAARYVL 248

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                 + L + D+FR  A +QLK      +      + G        +A +    K+  
Sbjct: 249 KYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVTHVDPGQSLV----QALEPLLRKR-- 302

Query: 196 VLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           V++IDTAG   ++  L   +  +  R +K  +         VL  T+ +  L      + 
Sbjct: 303 VVLIDTAGLQASDPALRMQLESLAGRGIKSRN-------YLVLATTSQKQVLTAAYHSYK 355

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             G  G I+TK+D TA  G ++ + ++H++PV +L  G  I D
Sbjct: 356 RCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPD 398


>gi|285018165|ref|YP_003375876.1| flagellar GTP-binding protein flhf [Xanthomonas albilineans GPE
           PC73]
 gi|283473383|emb|CBA15888.1| probable flagellar gtp-binding protein flhf [Xanthomonas
           albilineans]
          Length = 527

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 93/242 (38%), Gaps = 16/242 (6%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           T+     +     L+    L+  +L         D   +  VI ++G  G GKTT I KL
Sbjct: 279 TRDVVMQIPADLELHRGRGLMLGLLSKRLPIATLDPLEQGGVIALIGPTGAGKTTTIAKL 338

Query: 132 SKKMSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +    +      V L   DT R    +QL  +  +       ++  +    L        
Sbjct: 339 ASLFLERNAARDVALVTTDTVRVGGREQLHSYGRQLGIAVHEADSDASLQQLLQ------ 392

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +     +++IDTAG    +  L A +  +               L VL      + L +V
Sbjct: 393 RLADYKLVLIDTAGMGQRDRALAAQLHWLR-------ASRVVRSLLVLPTNAHFSDLDEV 445

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSA 308
               A A   G+I+TK+D T R G  + +VV H++P+ ++  G+ + +DL    A     
Sbjct: 446 VRRFASADPQGVILTKLDETGRFGSALSVVVDHRLPITWVTDGQRVPDDLHRANAASLVL 505

Query: 309 VI 310
            +
Sbjct: 506 RL 507


>gi|269103163|ref|ZP_06155860.1| flagellar biosynthesis protein FlhF [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163061|gb|EEZ41557.1| flagellar biosynthesis protein FlhF [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 528

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 106/254 (41%), Gaps = 22/254 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL--------IHKMLMPLSKPFNWDFSHRPHVILVVG 118
           V+ L     + +++ Q   Y   EL        +  +L    +    +      V+ ++G
Sbjct: 256 VKRLEKMGLSDELADQLASYIPEELPPHQAWPALLDLLSDQIQTIKENVLESGGVVALLG 315

Query: 119 VNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
             GVGKTT I KL+ +  M     ++ L   DTFR  A +QL  +          ++   
Sbjct: 316 PTGVGKTTTIAKLAARAAMEFGPEQIALVTTDTFRIGAHEQLATYGRIIGCPVRVAKDAE 375

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           + A + ++       +   ++++DTAG    +  L   +  +++     +  A    L V
Sbjct: 376 ELADILHQ------LRHRRLVLLDTAGMGQRDIRLSEQLDTLMQ-----NSGAHIRSLLV 424

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           + AT  +  +++          +G ++TK+D +   G +I + + + +P+ +L  G+ + 
Sbjct: 425 MPATAQRRVMQETIEHFRRIPLSGCVLTKLDESLSLGEVIAVTIQNALPIAYLADGQRVP 484

Query: 297 -DLEPFVAKDFSAV 309
            D++    K   A 
Sbjct: 485 EDIKVATGKFLVAR 498


>gi|16078703|ref|NP_389522.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309518|ref|ZP_03591365.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313842|ref|ZP_03595647.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318765|ref|ZP_03600059.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323037|ref|ZP_03604331.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315407|ref|YP_004207694.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis BSn5]
 gi|544314|sp|Q01960|FLHF_BACSU RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|39919|emb|CAA47062.1| flhF [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634012|emb|CAB13513.1| GTPase involved in the export of flagella [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|320021681|gb|ADV96667.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis BSn5]
          Length = 366

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 97/246 (39%), Gaps = 23/246 (9%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L     A  ++ + V+  + E++  ML    K   W        I++ G  G GKTT + 
Sbjct: 137 LRFSVEAGGLTEENVVGKLQEILCDMLPSADK---WQEPIHSKYIVLFGSTGAGKTTTLA 193

Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---FVCSEIGSDAAALAYEA 185
           KL+   M +   K+     DT+R AA++QLK +A+   A        E    A  L  E 
Sbjct: 194 KLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSE- 252

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                    D + +DTAGR   +   +  + + I         +      VL AT     
Sbjct: 253 --------YDHVFVDTAGRNFKDPQYIDELKETIPF------ESSIQSFLVLSATAKYED 298

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAK 304
           ++ +    +       I TK+D T   G +  I+   KI V F+  G+ +  D++     
Sbjct: 299 MKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDIQTVSPL 358

Query: 305 DFSAVI 310
            F  ++
Sbjct: 359 GFVRML 364


>gi|2773023|gb|AAC08906.1| regulatory protein PilA [Neisseria meningitidis]
          Length = 144

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/143 (44%), Positives = 93/143 (65%), Gaps = 1/143 (0%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           PL KP     +  P VI++ G+NG GKTT IGKL+K     G  V+LAAGDTFR+AA +Q
Sbjct: 2   PLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKYFQAHGKSVLLAAGDTFRAAAREQ 61

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+ W +R +   + S+   D+AA+ ++A + A+A+ +D+++ DTAGRL     LM  I K
Sbjct: 62  LQAWGERNNVTVI-SQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKK 120

Query: 218 MIRVLKRLDPHAPHSVLQVLDAT 240
           + RVL++  P APH ++ VLDA 
Sbjct: 121 VKRVLQKAMPDAPHEIIVVLDAN 143


>gi|332284012|ref|YP_004415923.1| flagellar biosynthesis regulator FlhF [Pusillimonas sp. T7-7]
 gi|330427965|gb|AEC19299.1| flagellar biosynthesis regulator FlhF [Pusillimonas sp. T7-7]
          Length = 769

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 20/242 (8%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           KR  + +S +  +  V + +   L  L    +     R   I +VG  GVGKTT I KL+
Sbjct: 126 KRLPEALSGKAAVQWVRQELIAHLPVLESENDLWARGR--AIALVGPTGVGKTTTIAKLA 183

Query: 133 KKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            +         ++L   DT+R  A +QLKI+          ++   +  A+  +      
Sbjct: 184 ARCVRRAGPDSLVLLTTDTYRIGAHEQLKIYGQMMRVPVHVAQDVDELQAIIRQVHPDQT 243

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
                 L+ID  G    +  +      +           P S L VL+AT+  + L +V 
Sbjct: 244 ------LLIDNVGISQRDHYIAEQAAML------AGAGRPVSRLLVLNATSHGDTLDEVA 291

Query: 251 MFHAVAG---TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDF 306
             +   G     G I+TK+D  +R G  +   + +++P++F+ +G+ +  DL P    + 
Sbjct: 292 RSYVNDGGSPLAGCIITKVDEASRTGASLDTALRYQLPIHFVSIGQKVPEDLMPARPAEL 351

Query: 307 SA 308
             
Sbjct: 352 VD 353


>gi|311992311|gb|ADQ26729.1| master regulator for class II operons [Aeromonas hydrophila]
          Length = 473

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 115/280 (41%), Gaps = 23/280 (8%)

Query: 46  REELEDLLIR--SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           RE +  LLI+    IG        ++L      +D+S+ + +  ++E++   L       
Sbjct: 194 REPMRALLIKELKKIGFD--DAFADQLAG-LIPEDMSIHQAMAQLAEVLTAQLKISEDEI 250

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIW 161
                    V L+ G  GVGKTT I KL+ +        +V L   D +R  A +QL+ +
Sbjct: 251 ---LRQGGAVALL-GPTGVGKTTTIAKLAARFAMKYGAEQVALITTDNYRIGAHEQLQTY 306

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                          DA  LA   ++    +   +++IDTAG    +  L   +  +++ 
Sbjct: 307 GRIMGCPV---RQVRDAEELANALYQFRHRR---LVLIDTAGVGQRDIRLTEQLDTLVKN 360

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            K            V+ AT+ +  +++          +G I+TK+D +   G +I + + 
Sbjct: 361 AKVRI-----RSYLVMSATSQRRVMQEAVDHFRRIPLSGCILTKLDESLNLGEVINVCIQ 415

Query: 282 HKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLDYGEEK 320
           + +P+ ++  G+ +  D++   A        G L+   E+
Sbjct: 416 NALPISYITDGQRVPEDIQVANAAQLVGAAMGSLERETEE 455


>gi|78047535|ref|YP_363710.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035965|emb|CAJ23656.1| flagellar GTP-binding protein FlhF [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 566

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 16/243 (6%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           LT+  A  +     L+    L+  +L         D   R  VI +VG  G GKTT I K
Sbjct: 317 LTRDIALQIPADTELHRGRGLMLGLLSKRLPVSPVDPLERGGVIALVGPTGAGKTTTIAK 376

Query: 131 LSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           L+++     A   V L   DT R    +QL  +  +       ++               
Sbjct: 377 LAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLD------LL 430

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +   +++IDTAG    +  L A +  +             + L VL A    + L +
Sbjct: 431 ERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-------QQVTSLLVLPANAHFSDLDE 483

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFS 307
           V    A A   G+++TK+D T R G  + +VV H++P+ ++  G+ + +DL    A    
Sbjct: 484 VVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLV 543

Query: 308 AVI 310
             +
Sbjct: 544 LRL 546


>gi|317407054|gb|EFV87072.1| flagellar biosynthesis protein [Achromobacter xylosoxidans C54]
          Length = 592

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 112/307 (36%), Gaps = 31/307 (10%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLT 72
           L    ++    L+  +  ++   R   G RE     L   L+ +     + + +VE +  
Sbjct: 14  LQDAISALRGALESRMDGLLWGGRQGPG-REPAGAALFRSLLDAGFSTKLVRTLVERM-- 70

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
                  + +  L      +   L  L     +       V  +VG  GVGKTT + KL+
Sbjct: 71  ---PAGATPEAALAWARNELVTHLPVLGSEDEFLGGG---VYALVGPTGVGKTTTLAKLA 124

Query: 133 KK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            +    +   +V +   D FR  A++QL+I+               +   +  E      
Sbjct: 125 ARCVAREGREQVAMLTTDNFRIGALEQLQIYGRLMGVPAHSVRDAGELRRILGE------ 178

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
                +++IDT G    +  +      +    K      P   L VL+A +  + L +V 
Sbjct: 179 LGNRKIVLIDTTGISQRDRQVAEQASMLCNAGK------PVRRLLVLNAASQGDTLDEVA 232

Query: 251 MFHAV---AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDF 306
             +         G I+TK+D  +R G  +   + H++P+++  +G+ + + LE   A   
Sbjct: 233 HAYRNGVGEDVAGCIITKLDEASRLGAALDTAIRHRLPIHYSSIGQKVPEHLELARADAL 292

Query: 307 SAVITGC 313
                  
Sbjct: 293 IDRAFAM 299


>gi|315453789|ref|YP_004074059.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179]
 gi|315132841|emb|CBY83469.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179]
          Length = 447

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 99/230 (43%), Gaps = 22/230 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K     V+V+R      E++ KM+    +  + ++     ++++VG  GVGKTT + KL+
Sbjct: 212 KMRENSVTVKRYFR---EVLRKMIYCRHENLDPNYKK---ILMLVGPTGVGKTTTLAKLA 265

Query: 133 KKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S   D   KV +   DT+R  A++QL  +A +            D         +  
Sbjct: 266 ARYSKLLDRKYKVGILTLDTYRIGAVEQLNWYAKKMKISIETVMDSEDFTK------EMK 319

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  DV++IDT G    +   +  + K  +   ++D         VL  TT    L+ +
Sbjct: 320 ALEYCDVVLIDTTGHSQRDKKKIEALKKFTQNGYKID------TTLVLSLTTKYEDLKDI 373

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DL 298
               +      LI TK+D +   G L  +V   K P+ +L +G+ +  DL
Sbjct: 374 YNAFSPLDIDSLIFTKLDESQGFGNLFSLVYESKKPISYLCIGQEVPMDL 423


>gi|319957082|ref|YP_004168345.1| GTP-binding signal recognition particle srp54 g- domain protein
           [Nitratifractor salsuginis DSM 16511]
 gi|319419486|gb|ADV46596.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Nitratifractor salsuginis DSM 16511]
          Length = 353

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 99/235 (42%), Gaps = 21/235 (8%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD---AGLK 141
           L  + E I + L  + +  +      P V+++VG  GVGKTT I KL+ + S       K
Sbjct: 133 LSYLLEEIDEGLEVVPEELST-----PRVMMMVGPTGVGKTTTIAKLAARYSYLLDREYK 187

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V L   DT+R+ A +QL  +A               A  +   A      K  DV+++DT
Sbjct: 188 VALINLDTWRAGAYEQLDNFARILHL------EHRRAERIEEFAQHLDALKDYDVVLVDT 241

Query: 202 AGRLHNNSI-LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           AG    ++  L+  I  +  V  R       +   V+ AT     +R++           
Sbjct: 242 AGISPYDTDRLIKTIEFLKSVQNREI-----TTSLVISATAKYEDIREIYEHFNFIRVDN 296

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCL 314
            I+TK D T R G LI  +    +PV ++  G+ + +DL P   +      TG L
Sbjct: 297 AIVTKFDETQRVGDLIAFLTEKHLPVSYISTGQKVPDDLLPASKERILEAFTGEL 351


>gi|215447178|ref|ZP_03433930.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           T85]
          Length = 350

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DV+I+DTAGRL  +  LMA    +   +       P  VL VLDA  GQ+A+     
Sbjct: 13  KHFDVVIVDTAGRLGIDEELMAQAAAIRDAIN------PDEVLFVLDAMIGQDAVTTAAA 66

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F     ++ I 
Sbjct: 67  FGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRIL 126

Query: 312 GCLD 315
           G  D
Sbjct: 127 GMGD 130


>gi|119470001|ref|ZP_01612806.1| flagellar biosynthesis regulator FlhF [Alteromonadales bacterium
           TW-7]
 gi|119446711|gb|EAW27984.1| flagellar biosynthesis regulator FlhF [Alteromonadales bacterium
           TW-7]
          Length = 491

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 103/254 (40%), Gaps = 22/254 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL--------IHKMLMPLSKPFNWDFSHRPHVILVVG 118
           ++ L+     KDV+ Q   +   ++        +  M+    +  N +   +  V  +VG
Sbjct: 221 IDRLVGMGIDKDVAEQMACFVPDDVSRQQGWKALLTMVEDQMQTTNNEILRQGGVYALVG 280

Query: 119 VNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
             GVGKTT + KL+          KV L   DT+R  A +QL  +           +  +
Sbjct: 281 PTGVGKTTTVAKLAALGAQKYGADKVALITTDTYRIGAYEQLATYGRIIGCGVKQVKDAN 340

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           + A + Y        +   +++IDTAG    +  L   +  ++R     +         V
Sbjct: 341 ELAEVLYH------LRNKRLVLIDTAGMSQRDLRLTEQLNTLMR-----NQRVDIRSYLV 389

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           L AT+  + L++          +G I TK+D +   G +I I + +++P+ +L  G+ + 
Sbjct: 390 LSATSQIHVLQETVRHFKKVQLSGCIFTKLDESLSLGEIISIAIQNRLPIGYLTNGQRVP 449

Query: 297 -DLEPFVAKDFSAV 309
            D+    A+     
Sbjct: 450 EDIRVANAEKLVKK 463


>gi|289759036|ref|ZP_06518414.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           T85]
 gi|289714600|gb|EFD78612.1| signal recognition particle protein ffh [Mycobacterium tuberculosis
           T85]
          Length = 349

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K  DV+I+DTAGRL  +  LMA    +   +       P  VL VLDA  GQ+A+     
Sbjct: 12  KHFDVVIVDTAGRLGIDEELMAQAAAIRDAIN------PDEVLFVLDAMIGQDAVTTAAA 65

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           F    G TG+ +TK+DG ARGG  + +     +P+ F   GE + D + F     ++ I 
Sbjct: 66  FGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRIL 125

Query: 312 GCLD 315
           G  D
Sbjct: 126 GMGD 129


>gi|237751041|ref|ZP_04581521.1| flagellar biosynthesis regulator FlhF [Helicobacter bilis ATCC
           43879]
 gi|229373486|gb|EEO23877.1| flagellar biosynthesis regulator FlhF [Helicobacter bilis ATCC
           43879]
          Length = 482

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 114/243 (46%), Gaps = 25/243 (10%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K     ++++R      E++ KM+    +P + D + +  ++++VG  GVGKTT + KL+
Sbjct: 253 KMRENSLTIKRYFR---EVLRKMV--YCRPESKDMTKK--IMMLVGPTGVGKTTALAKLA 305

Query: 133 KKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            + S     KV +   D++R  A+ QL+ +A+R           S    +A E F QA  
Sbjct: 306 ARFSLEKKAKVGIITLDSYRIGALQQLEWYAERMRI--------SIQMVVAPEEFLQALD 357

Query: 192 --KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  D +++DTAGR  N+S  +A I K ++   +++         V+ ATT    LR +
Sbjct: 358 SLRYCDYILVDTAGRSQNDSERIAQIKKYLQGDYKIN------TSLVMSATTKFEDLRDI 411

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
               ++     LI +K+D +   G +  +    K P+ +  +G+ +  DL     +  + 
Sbjct: 412 YDAFSILNLDTLIFSKLDESRGLGNIFSLAYETKKPISYFSIGQEVPTDLVVATNESLAD 471

Query: 309 VIT 311
            + 
Sbjct: 472 WLL 474


>gi|163782185|ref|ZP_02177184.1| flagellar biosynthesis FlhF [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882717|gb|EDP76222.1| flagellar biosynthesis FlhF [Hydrogenivirga sp. 128-5-R1-1]
          Length = 380

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/313 (20%), Positives = 132/313 (42%), Gaps = 45/313 (14%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV- 62
           QK   E +    +L         +LK  +++++ + R  D  +E         D+G  + 
Sbjct: 64  QKEFEEKIKVYEEL--------ERLKSTLSEVMKNVRSQDEEKETSRR-----DVGEGLS 110

Query: 63  --AQKIVEELLTKRYAKDVS-----------VQRVLYDVSELIH-KMLMPLSKPFNWD-- 106
             AQ+++  ++ +   KDV+           ++    D  E I+  ++    K    +  
Sbjct: 111 MRAQRVLSRMVYRGVRKDVARRLVEEACGYDIELGKLDFKEEIYPSLMESFRKNIVIEGE 170

Query: 107 --FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
             F + P +++++G  GVGKTT I KLS     AG +  +   D++R  A++QL+ + + 
Sbjct: 171 RVFRNTPRIMVLIGPTGVGKTTTIAKLSYLFKRAGKRPGVITLDSYRVGAVEQLRAFINI 230

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
               F  ++   +      E          D++++DTAGR  ++ + +  +   +     
Sbjct: 231 MELPFRVADTPEEFLKSLEE------MDNRDLILVDTAGRSQHDRLRLNELKLFLE---- 280

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
               A   +   L A   +  + +V M   +    GLI +K+D T+  G +I +    K+
Sbjct: 281 ---SAETQIYLTLSANLSELVMYEVIMQFGMFPIKGLIFSKLDETSYPGNVINVAYRTKL 337

Query: 285 PVYFLGVGEGIND 297
           P+     G+ + D
Sbjct: 338 PILCFTTGQTVPD 350


>gi|322379815|ref|ZP_08054112.1| flagellar biosynthesis regulator FlhF [Helicobacter suis HS5]
 gi|321147783|gb|EFX42386.1| flagellar biosynthesis regulator FlhF [Helicobacter suis HS5]
          Length = 459

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 101/230 (43%), Gaps = 22/230 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K     V+V+R      E++ KM+    +  + ++     ++++VG  GVGKTT + KL+
Sbjct: 224 KMRENSVTVKRYFR---EVLRKMIYCRHEGLDLNYKK---ILMLVGPTGVGKTTTLAKLA 277

Query: 133 KKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S   D   KV +   DT+R  A++QL  +A +            D      +A +  
Sbjct: 278 ARYSKMLDKKYKVGILTLDTYRIGAVEQLVWYAKKMKISIETVMDTQD-FDREMQALEY- 335

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV++IDT G   ++S  +  + K      ++D         VL  TT    L+ +
Sbjct: 336 ----CDVVLIDTTGHSQHDSKKIENLKKFTENGYKID------TTLVLSLTTKYEDLKDI 385

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DL 298
               +      LI TK+D +   G L  +V   K P+ +L +G+ +  DL
Sbjct: 386 YQAFSPLEIDSLIFTKLDESRGFGNLFSLVYESKKPISYLSIGQEVPMDL 435


>gi|325922771|ref|ZP_08184504.1| flagellar GTP-binding protein [Xanthomonas gardneri ATCC 19865]
 gi|325546746|gb|EGD17867.1| flagellar GTP-binding protein [Xanthomonas gardneri ATCC 19865]
          Length = 360

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 16/241 (6%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +  A  +     L+    L+  +L         D   R  VI +VG  G GKTT I KL+
Sbjct: 113 RDVALQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLA 172

Query: 133 KKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++     A   V L   DT R    +QL  +  +       ++                +
Sbjct: 173 QRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLE------LLER 226

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +   +++IDTAG    +  L A +  +    +        + L VL A    + L +V 
Sbjct: 227 LRDYKLVLIDTAGMGQRDRALAAQLNWLRAAHQ-------VTSLLVLPANAHFSDLDEVV 279

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAV 309
              A A   G+++TK+D T R G  + +VV H++P+ ++  G+ + +DL    A      
Sbjct: 280 RRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLR 339

Query: 310 I 310
           +
Sbjct: 340 L 340


>gi|319790428|ref|YP_004152061.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermovibrio ammonificans HB-1]
 gi|317114930|gb|ADU97420.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermovibrio ammonificans HB-1]
          Length = 383

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 134/328 (40%), Gaps = 29/328 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKL------------KEGITDIISSRRLDDGVREELED 51
           Q+  ++ L  +R+L +    +  K              +G + ++    L +   + LE 
Sbjct: 65  QEQVTKELEELRRLVESLKESVSKAASSAPPPPPPPRGDGGSSVVFEELLVEFTGDALEL 124

Query: 52  L--LIRSDIGVAVAQKIVEE---LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +  L+   +   VA+ IVE+   L  +    D++       V   + +++          
Sbjct: 125 VKKLLEKGVEPEVAKAIVEKSCGLDIETEKMDLNTATFREAVFSGVKELISFTGGFKVEP 184

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            S  P +I  +G  GVGKTT + K++ K      LKV +   DTF+  A+ Q +++A   
Sbjct: 185 QSGEPKLIAFLGPTGVGKTTNLFKVASKFVIEQDLKVGVITTDTFKVGAVQQARVYASIL 244

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +  F  +        +       A  + +DV++IDT GR H +   +      I+ +   
Sbjct: 245 NVPFFVATDQKKFKEIL------ASVENLDVVLIDTVGRSHYDYWRLGE----IKAILSG 294

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                   L +      + AL  V+ +      + L  TK+D ++R G ++ +    ++P
Sbjct: 295 ASLPIEYTLLISCNYDTKEALEVVKRYRGFFPVSSLFFTKVDESSRPGVMVNVPYYTELP 354

Query: 286 VYFLGVGEGIN-DLEPFVAKDFSAVITG 312
           + +L  G+ +  D++    +  +  + G
Sbjct: 355 LAYLSTGQRVPEDIKLLTPEVVTDYLVG 382


>gi|307637108|gb|ADN79558.1| flagellar biosynthesis protein [Helicobacter pylori 908]
 gi|325997295|gb|ADZ49503.1| Flagellar biosynthesis protein [Helicobacter pylori 2017]
          Length = 455

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 220 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 273

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 274 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 331

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 332 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 381

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 382 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 441

Query: 309 VIT 311
            + 
Sbjct: 442 CML 444


>gi|163856426|ref|YP_001630724.1| flagellar biosynthesis regulator FlhF [Bordetella petrii DSM 12804]
 gi|163260154|emb|CAP42456.1| flagellar biosynthesis protein FlhF [Bordetella petrii]
          Length = 778

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 105/269 (39%), Gaps = 25/269 (9%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L  LL+ +     +A+ ++E L      ++         V   +   L  L++       
Sbjct: 122 LFRLLLDAGFSSRLARAMLERLPGGLGQREAQSW-----VRNELVTHLPVLTREDELWEQ 176

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               V  +VG  GVGKTT + KL+ +    +   +V +   D FR  A++QL+I+     
Sbjct: 177 GG--VYALVGPTGVGKTTTLAKLAARCVAREGREQVAMLTTDNFRIGALEQLQIYGRLMG 234

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                         +A      A+     +++IDT G    +  + A    +        
Sbjct: 235 VP------ARSVRDVAELRATLAELGDRKMVLIDTTGISQRDRNVAAQAALL------CG 282

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAV---AGTTGLIMTKMDGTARGGGLIPIVVTHK 283
              P   L VL+A +  + L +V   +         G I+TK+D  +R G  +   V H+
Sbjct: 283 AGRPVRRLLVLNAASQGDTLDEVAHAYRHGAGEDVAGCIITKLDEASRLGPALDTAVRHR 342

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           +PV+++ VG+ +  DL    A +      
Sbjct: 343 LPVHYVCVGQKVPEDLALARADELVDRAL 371


>gi|78776902|ref|YP_393217.1| flagellar biosynthesis regulator FlhF [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497442|gb|ABB43982.1| GTP-binding signal recognition particle SRP54, G-domain
           [Sulfurimonas denitrificans DSM 1251]
          Length = 362

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 13/225 (5%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD---AGLK 141
           +    + I + ++P+         ++  VI++VG  GVGKTT + KL+ + S       K
Sbjct: 134 IKRYFQTILRKMVPVRLEALPSIGNK-KVIMLVGPTGVGKTTSVAKLAARYSFLMQKKYK 192

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           V L   DT+R  A++QL  +A          E   D +  A  A    +    D ++IDT
Sbjct: 193 VGLIVLDTYRIGAVEQLMQYARMMKL---AIETVVDPSDFAS-ALDSLK--YCDYILIDT 246

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
            G    +   +    K+   L   D      V+ V+ ++     L+      +      L
Sbjct: 247 MGSSPYDRNKIE---KIYECLDGNDTKYNIDVVLVMPSSIKYEDLKATYENFSSLNVDTL 303

Query: 262 IMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
           + TK+D T   G +  +    K P+ +  VG+ + +       DF
Sbjct: 304 MFTKLDETRGFGNIFSLAYEIKKPISYFSVGQEVPEDLVCATSDF 348


>gi|330955366|gb|EGH55626.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae Cit 7]
          Length = 269

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 21/223 (9%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-- 135
           D   Q     ++ L   + +P  +P          VI +VG  G+GKTT + KL+ +   
Sbjct: 21  DEPRQAWRMLLAHLARMIAVPEVEPLEEGG-----VIAMVGPAGMGKTTTLAKLAARYVL 75

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                 + L + D+FR  A +QLK      +      + G        +A +    K+  
Sbjct: 76  KYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVTHVDPGQSLV----QALEPLLRKR-- 129

Query: 196 VLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           V++IDTAG   ++  L   +  +  R +K  +         VL  T+ +  L      + 
Sbjct: 130 VVLIDTAGLQASDPALRMQLESLAGRGIKSRN-------YLVLATTSQKQVLTAAYHSYK 182

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             G  G I+TK+D TA  G ++ + ++H++PV +L  G  I D
Sbjct: 183 RCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPD 225


>gi|258404722|ref|YP_003197464.1| flagellar biosynthetic protein FlhF [Desulfohalobium retbaense DSM
           5692]
 gi|257796949|gb|ACV67886.1| flagellar biosynthetic protein FlhF [Desulfohalobium retbaense DSM
           5692]
          Length = 437

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 105/256 (41%), Gaps = 17/256 (6%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +    A+ +++++      +   +   +    + + + L   +  +       P  I +V
Sbjct: 187 VQPEAARAVLDQI-GAVTGESGEIGDPVAHCQQALAEWLR--TDDWMAQSLRHPKRIALV 243

Query: 118 GVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           G  GVGKTT I KL+   +   G  ++L   D FR AA +QL+++A+  +          
Sbjct: 244 GPTGVGKTTTIAKLAAQYLRRYGQGLLLVTMDNFRIAAAEQLRVYAEIMNVPLEVVTSAE 303

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
               +        + +   +++ID+AGR   +   M  +   +   +  D H       V
Sbjct: 304 QMRTVMQ------RHEDKKLMLIDSAGRNPRDESGMQELHAFLGDSQLFDKH------LV 351

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           L ATT    ++ +          GLI TK+D T   G ++ +      P+ +L  G+ + 
Sbjct: 352 LSATTRDEDMQSIVDRFGDLEINGLIFTKIDETQSYGSIVNVQHRTGCPLTYLTNGQRVP 411

Query: 297 -DLEPFVAKDFSAVIT 311
            DL P  +   S +IT
Sbjct: 412 EDLLPADSVQLSQLIT 427


>gi|257484898|ref|ZP_05638939.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289629015|ref|ZP_06461969.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647086|ref|ZP_06478429.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487815|ref|ZP_07005856.1| Flagellar biosynthesis protein flhF [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157907|gb|EFH98986.1| Flagellar biosynthesis protein flhF [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325132|gb|EFW81201.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329391|gb|EFW85384.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330866463|gb|EGH01172.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330986507|gb|EGH84610.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011082|gb|EGH91138.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 442

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHA 229
             + G        +A +    K+  V++IDTAG   ++  L   +  +  R +K  +   
Sbjct: 284 HVDPGQSLV----QALEPLLRKR--VVLIDTAGLQASDPALRMQLESLAGRGIKSRN--- 334

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L
Sbjct: 335 ----YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYL 390

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 391 TDGPRIPD 398


>gi|330889041|gb|EGH21702.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 442

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHA 229
             + G        +A +    K+  V++IDTAG   ++  L   +  +  R +K  +   
Sbjct: 284 HVDPGQSLV----QALEPLLRKR--VVLIDTAGLQASDPALRMQLESLAGRGIKSRN--- 334

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L
Sbjct: 335 ----YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYL 390

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 391 TDGPRIPD 398


>gi|146307829|ref|YP_001188294.1| flagellar biosynthesis regulator FlhF [Pseudomonas mendocina ymp]
 gi|145576030|gb|ABP85562.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Pseudomonas mendocina ymp]
          Length = 437

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 22/253 (8%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++ + LL+K        Q     ++ L H +  P  +P          VI +VG  G+GK
Sbjct: 176 ELSQALLSKVAGVAEPRQAWRMLLAHLAHAIKTPKVEPLEEGG-----VIALVGPAGMGK 230

Query: 125 TTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA-AAL 181
           TT + KL+ +        +V L + D+FR  A +QLK             + G     AL
Sbjct: 231 TTTLAKLAARYVLKYGAQQVALVSMDSFRIGAQEQLKTLGRILGVSVTQIDPGQSLLQAL 290

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
              A K+       V+++DTAG   N+  L   +  +     +           VL AT+
Sbjct: 291 TPLAKKR-------VVLVDTAGLPGNDPALRLQLESLASARIKAKN------YLVLAATS 337

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEP 300
               L+     +   G +G I+TK+D  A  G ++ + +   +PV ++  G  I +DL+ 
Sbjct: 338 QSQVLKAAYHSYKRCGLSGCILTKLDEAASLGEVLGLAIGQHLPVAYVTDGPRIPDDLQV 397

Query: 301 FVAKDFSAVITGC 313
             +    +   G 
Sbjct: 398 PRSHQLVSRAVGL 410


>gi|118444135|ref|YP_877993.1| flagellar biosynthesis regulator FlhF [Clostridium novyi NT]
 gi|118134591|gb|ABK61635.1| flagellar biosynthesis protein flhF [Clostridium novyi NT]
          Length = 411

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 113/265 (42%), Gaps = 26/265 (9%)

Query: 50  EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
           E LL  SD+  ++ +KI      K   ++         V E I  ++             
Sbjct: 166 EKLLENSDLNKSIIRKI-----EKIVDENTKDIEDKEKVKEAICDIVP-------VSHDD 213

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
              V+ +VG  GVGKTT I KL+ +++     KV L   DT+R  AI+QL  +A   S  
Sbjct: 214 IKGVVALVGPTGVGKTTTIAKLAGRLALIEKKKVGLITVDTYRIGAIEQLSTYASIMSIP 273

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F          ++          K  +++++DT GR   N + +A +   ++     +  
Sbjct: 274 F------KSVFSIKEMEAALESMKDCEIILLDTTGRSSKNIMQIAELNAFVQKANSKN-- 325

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
               V  V+ ATT    +  +   +     T +I+TK+D T   G ++ I+ +   P+ F
Sbjct: 326 ----VFLVISATTKNRDIESIIEGYKTLNYTNVIITKLDETTTYGSILNILNSANKPLSF 381

Query: 289 LGVGEGI-NDLEPFVAKDFSAVITG 312
           +  G+ + +D +    ++ + ++ G
Sbjct: 382 VTTGQNVPDDFKSITKEEVAKLVLG 406


>gi|253827991|ref|ZP_04870876.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511397|gb|EES90056.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
          Length = 465

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 17/227 (7%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLA 145
            E++ KM+   ++  N +     +++++VG  GVGKTT + KL+ + S   +   KV + 
Sbjct: 246 REVLRKMVYARTENLNSNVK---NIMMLVGPTGVGKTTTLAKLAARYSRMLNKNYKVGII 302

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             DT+R  A+DQL  +A +            +    A ++ K       D ++IDT G  
Sbjct: 303 TLDTYRIGAVDQLMFYAKKMKLSIDTVVDTEEFIN-ALDSLKY-----CDYILIDTVGSS 356

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            ++   +  +   +      DP+    V  V+ ATT    L+ +    +  G   LI TK
Sbjct: 357 QHDRSKLESLKSFVNA----DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTLIFTK 412

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           +D T   G +  ++   K    +  +G+ +  DL    +      + 
Sbjct: 413 LDETHSYGNIFSLIYETKKATSYFSIGQEVPNDLMVATSDFLIDCLL 459


>gi|268678934|ref|YP_003303365.1| flagellar biosynthetic protein FlhF [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616965|gb|ACZ11330.1| flagellar biosynthetic protein FlhF [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 423

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 98/252 (38%), Gaps = 16/252 (6%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + I+   L     +  +    +    +++ + L+P+         ++  V++ VG  GVG
Sbjct: 169 ENIMNLTLEHMPGRMKNSSETIKRYFQVLLRKLIPVRVEAEVQKGNK-RVMMFVGPTGVG 227

Query: 124 KTTVIGKLSKKM---SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           KTT I KL+ +     +   KV +   DT+R  A++QL  +A          E   D   
Sbjct: 228 KTTTIAKLAARYSYIQEKRSKVGIITLDTYRIGAVEQLFAYAKMMRLPI---EDVVDPND 284

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
               A         DV++IDT G    +   +  + K ++     +      V  VL A 
Sbjct: 285 F-NNALS--SLSHCDVILIDTVGSSQYDKEKLVKLNKFLQ-----NSQLQIDVNLVLSAG 336

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLE 299
                L+++    +      LI TK D T   G +  ++     PV +  +G+ + +D+ 
Sbjct: 337 CKLEDLKEIYKNFSFLDIDTLIFTKFDETKAFGTIFSLIYDTDKPVSYFSIGQEVPDDIV 396

Query: 300 PFVAKDFSAVIT 311
           P  +      I 
Sbjct: 397 PASSDFLVECIL 408


>gi|71736999|ref|YP_275523.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557552|gb|AAZ36763.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 442

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHA 229
             + G        +A +    K+  V++IDTAG   ++  L   +  +  R +K  +   
Sbjct: 284 HVDPGQSLV----QALEPLLRKR--VVLIDTAGLQASDPALRMQLESLAGRGIKSRN--- 334

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L
Sbjct: 335 ----YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYL 390

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 391 TDGPRIPD 398


>gi|325917847|ref|ZP_08180025.1| flagellar GTP-binding protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325535931|gb|EGD07749.1| flagellar GTP-binding protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 331

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 16/243 (6%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           LT+  A  +     L+    L+  +L         D   R  VI +VG  G GKTT I K
Sbjct: 82  LTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAK 141

Query: 131 LSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           L+++     A   V L   DT R    +QL  +  +       ++               
Sbjct: 142 LAQRFAAQHAPRDVALVTTDTLRVGGREQLHSYGRQLGIAVHEADSAESLLE------LL 195

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +   +++IDTAG    +  L A +  +             + L VL A +    L +
Sbjct: 196 DRLRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-------QQVTSLLVLPANSHFADLDE 248

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFS 307
           V    A A   G+++TK+D T R G  + +VV H++P+ ++  G+ + +DL    A    
Sbjct: 249 VVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQLPITWVTDGQRVPDDLHRANAASLV 308

Query: 308 AVI 310
             +
Sbjct: 309 LRL 311


>gi|302343747|ref|YP_003808276.1| flagellar biosynthetic protein FlhF [Desulfarculus baarsii DSM
           2075]
 gi|301640360|gb|ADK85682.1| flagellar biosynthetic protein FlhF [Desulfarculus baarsii DSM
           2075]
          Length = 366

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 118/289 (40%), Gaps = 36/289 (12%)

Query: 43  DGVREELEDLLIRSDIGVAVAQK------------------IVEELLTKRYAKDVSVQRV 84
           +G+R +L   ++ SD+G   A +                  I+E LL             
Sbjct: 82  EGLRRQLSRHMLASDLGAENAARPELAAIYRHLRGQELDPLIIEALLE---GLGAPQGAG 138

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVM 143
           L  +  +  K ++ ++    +       V  +VG  GVGKTT + KL+   +   GL+V 
Sbjct: 139 LLPMLAIRLKKMLRVAPEPRFGGGQA-KVWALVGPTGVGKTTTVAKLAASFAMKAGLRVG 197

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           L   DTFR AA +QLK++        V      +       A ++     +D++++DT G
Sbjct: 198 LVTLDTFRIAAAEQLKVYGRIMDLPTVVVGGAKEYQ----RAVEE--LSGLDLILVDTVG 251

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           R   ++  +A +  ++        H       VL   T     +++    A+     L+ 
Sbjct: 252 RAPGDADNLAELRSILSA------HPQTERHLVLACPTRDADQKRIIEGFALFEPKSLVF 305

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
           TK+D T+  G ++  V   K+PV +L  G+ + +D+E       +  + 
Sbjct: 306 TKLDETSVYGPILNQVARAKLPVSYLTTGQRVPDDMEQATLDGLARRLL 354


>gi|107024381|ref|YP_622708.1| flagellar biosynthesis regulator FlhF [Burkholderia cenocepacia AU
           1054]
 gi|116688293|ref|YP_833916.1| flagellar biosynthesis regulator FlhF [Burkholderia cenocepacia
           HI2424]
 gi|105894570|gb|ABF77735.1| GTP-binding signal recognition particle SRP54, G-domain protein
           [Burkholderia cenocepacia AU 1054]
 gi|116646382|gb|ABK07023.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Burkholderia cenocepacia HI2424]
          Length = 592

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 107/255 (41%), Gaps = 22/255 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L +   A+  + ++       ++   L  L         
Sbjct: 302 LTKHLFAAGFSAQLVRMLVDNLPSGDDAQ--TFEQAAEWAQSVLASNLPVLDSE--DALM 357

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 358 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 417

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D       A   ++ +   +++IDT G    +  +   I  +        
Sbjct: 418 VPVHAVKDAGDL------ALALSELRNKHIVLIDTIGMSQRDRAVSDQIAMLH------G 465

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARGGGLIPIVVTH 282
            +AP   L +L+AT+  + L +V   +  AG      G I+TK+D     GG++  V+ +
Sbjct: 466 ANAPVQRLLLLNATSHGDTLNEVVQAYRSAGEHPDLAGCILTKLDEATHLGGVLDTVIRY 525

Query: 283 KIPVYFLGVGEGIND 297
           K+PV+++  G+ + +
Sbjct: 526 KLPVHYVSTGQKVPE 540


>gi|242309560|ref|ZP_04808715.1| flagellar biosynthesis regulator FlhF [Helicobacter pullorum MIT
           98-5489]
 gi|239524131|gb|EEQ63997.1| flagellar biosynthesis regulator FlhF [Helicobacter pullorum MIT
           98-5489]
          Length = 404

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 17/227 (7%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLA 145
            E++ KM+   ++  + +     +++++VG  GVGKTT + KL+ + S   +   KV + 
Sbjct: 185 REVLRKMVYARAENLSGNVK---NIMMLVGPTGVGKTTTLAKLAARYSRMLNKNYKVGII 241

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             DT+R  A+DQL  +A +            +    A ++ K       D ++IDT G  
Sbjct: 242 TLDTYRIGAVDQLMFYAKKMKLSIDTVVDTEEFIN-ALDSLKY-----CDYILIDTVGSS 295

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            ++   +  +   +      DP+    V  V+ ATT    L+ +    +  G   LI TK
Sbjct: 296 QHDRAKLESLKNFVNA----DPNTKIDVSLVMSATTKYEDLKDIYHTFSTLGIDTLIFTK 351

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           +D T   G +  ++   K    +  +G+ +  DL    +      + 
Sbjct: 352 LDETHSYGNIFSLIYETKKATSYFSIGQEVPNDLMVATSDFLIDCLL 398


>gi|325995699|gb|ADZ51104.1| Flagellar biosynthesis protein [Helicobacter pylori 2018]
          Length = 455

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 220 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 273

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 274 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 331

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 332 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 381

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 382 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 441

Query: 309 VIT 311
            + 
Sbjct: 442 CML 444


>gi|153952395|ref|YP_001397329.1| flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939841|gb|ABS44582.1| flagellar biosynthetic protein FlhF [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 481

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 14/206 (6%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +  ++++VG  GVGKTT + KL+ + +      K  +   DT+R  A++QL  +A    
Sbjct: 279 KKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMK 338

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              + S    D      EA K       +V+++DT G    +   +A   + +     + 
Sbjct: 339 LPIIDSIEPKDLD----EAIK--SLNNCEVILVDTIGNSQYDQSKLAKTKEFL-----IH 387

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            +A   V  V+ A      L +     +      LI+TK D T   G +  ++    IP+
Sbjct: 388 SNAEIDVNLVVSANIKHEDLMENYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPL 447

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVIT 311
            F   G+ + +DLE   +      I 
Sbjct: 448 SFFSTGQEVPDDLEVANSDFLVHCIL 473


>gi|291484194|dbj|BAI85269.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           natto BEST195]
          Length = 366

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 23/246 (9%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L     A  ++ + V+  + E++   L    K   W        I++ G  G GKTT + 
Sbjct: 137 LRFSVEAGGLTEENVVGKLQEILCDTLPAADK---WQEPIHSKYIVLFGSTGAGKTTTLA 193

Query: 130 KLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---FVCSEIGSDAAALAYEA 185
           KL+   M +   K+     DT+R AA++QLK +A+   A        E    A  L  E 
Sbjct: 194 KLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSE- 252

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                    D + +DTAGR   +   +  + + I         +      VL AT     
Sbjct: 253 --------YDHVFVDTAGRNFKDPQYIDELKETIPF------ESSIQSFLVLSATAKYED 298

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAK 304
           ++ +    +       I TK+D T   G +  I+   KI V F+  G+ +  D++     
Sbjct: 299 MKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIGVGFMTNGQNVPEDIQTVSPL 358

Query: 305 DFSAVI 310
            F  ++
Sbjct: 359 GFVRML 364


>gi|317181754|dbj|BAJ59538.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori F57]
          Length = 458

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 334

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 335 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|77918765|ref|YP_356580.1| flagellar GTP-binding protein [Pelobacter carbinolicus DSM 2380]
 gi|77544848|gb|ABA88410.1| flagellar GTP-binding protein [Pelobacter carbinolicus DSM 2380]
          Length = 419

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 20/247 (8%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           ++L  ++      ++  L D    +  +  PL          R   I +VG  GVGKTT 
Sbjct: 184 DKLSPRQLGDPQGIREFLVDAIARLITVYGPLQTE-----PRRQKRIALVGPTGVGKTTT 238

Query: 128 IGKLSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           I K++ K    G  +V L   DT+R AA++QLK++ +  +                ++A 
Sbjct: 239 IAKMAAKQLLNGTGRVALVTIDTYRIAAVEQLKVYGEIMNLPVEVVTTPEQL----HQAL 294

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A+ +  ++++IDTAGR   + + +A +   +         A    L VL ATT    L
Sbjct: 295 --ARHQDKELILIDTAGRSPRDDMSIAELAAFL-------GKAETENLLVLSATTRDREL 345

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKD 305
            +     +      L+ TK+D   + G L+ I +T ++P+ FL  G+ +  DL     + 
Sbjct: 346 TEAVQRFSRIPLHSLVFTKLDECEQCGTLLNISLTQQLPLSFLTNGQRVPEDLVEADTEA 405

Query: 306 FSAVITG 312
            +  ITG
Sbjct: 406 ITGFITG 412


>gi|109947671|ref|YP_664899.1| flagellar biosynthesis regulator FlhF [Helicobacter acinonychis
           str. Sheeba]
 gi|109714892|emb|CAJ99900.1| flagellar biosynthesis protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 457

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     ++++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 222 RMRENSITIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 275

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 276 ARYSRMLTKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 333

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ K I      D      V  VL  TT    ++ +
Sbjct: 334 ----CDFILVDTTGHSQYDKEKIAGLKKFI------DGGYNIDVSLVLSVTTKYEDMKDI 383

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L +G+ +  DL+    +    
Sbjct: 384 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSIGQEVPMDLKVATNEYLVD 443

Query: 309 VIT 311
            + 
Sbjct: 444 CML 446


>gi|317009057|gb|ADU79637.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori India7]
          Length = 457

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 222 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 275

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 276 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 333

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 334 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 383

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 384 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 443

Query: 309 VIT 311
            + 
Sbjct: 444 CML 446


>gi|51246528|ref|YP_066412.1| flagellar biosynthesis protein (FlhF) [Desulfotalea psychrophila
           LSv54]
 gi|50877565|emb|CAG37405.1| related to flagellar biosynthesis protein (FlhF) [Desulfotalea
           psychrophila LSv54]
          Length = 430

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 104/253 (41%), Gaps = 39/253 (15%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A+ I+ +L      K         +V+ L+ ++             +    I +VG  GV
Sbjct: 210 AESILSQLKQHIKGK--------IEVNPLLKEI-------------NEQQCIALVGPTGV 248

Query: 123 GKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           GKTT + KL+  K+S     + +   DT+R AA++QLK++ +  +              +
Sbjct: 249 GKTTTLAKLAAAKLSSGSASIAMITIDTYRIAAVEQLKVYGEIMNIPVDVV--------I 300

Query: 182 AYEAFKQAQAKKVD--VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
             E  + +  +  D  +++IDTAGR   +   +  +   +R      P        VL  
Sbjct: 301 TPEQLESSLLRHRDCELILIDTAGRSPKDDFSIDELANFLR------PEFNIEKHLVLST 354

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DL 298
           T+ ++ L +        G    + TK+D  ++ G ++   + +K P+ ++  G+ +  D 
Sbjct: 355 TSRESELAETIRQFGRLGIDSTVYTKIDECSQLGVILNTQLHNKTPISYMTNGQRVPEDF 414

Query: 299 EPFVAKDFSAVIT 311
                K  + +I 
Sbjct: 415 IDISPKCIAELIM 427


>gi|322378961|ref|ZP_08053375.1| flagellar biosynthesis regulator FlhF [Helicobacter suis HS1]
 gi|321148637|gb|EFX43123.1| flagellar biosynthesis regulator FlhF [Helicobacter suis HS1]
          Length = 443

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 101/230 (43%), Gaps = 22/230 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K     V+V+R      E++ KM+    +  + ++     ++++VG  GVGKTT + KL+
Sbjct: 208 KMRENSVTVKRYFR---EVLRKMIYCRHEGLDLNYKK---ILMLVGPTGVGKTTTLAKLA 261

Query: 133 KKMS---DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S   D   KV +   DT+R  A++QL  +A +            D      +A +  
Sbjct: 262 ARYSKMLDKKYKVGILTLDTYRIGAVEQLVWYAKKMKISIETVMDTQD-FDREMQALEY- 319

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                DV++IDT G   ++S  +  + K      ++D         VL  TT    L+ +
Sbjct: 320 ----CDVVLIDTTGHSQHDSKKIENLKKFTENGYKID------TTLVLSLTTKYEDLKDI 369

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DL 298
               +      LI TK+D +   G L  +V   K P+ +L +G+ +  DL
Sbjct: 370 YQAFSPLEIDSLIFTKLDESRGFGNLFSLVYESKKPISYLSIGQEVPMDL 419


>gi|188991597|ref|YP_001903607.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733357|emb|CAP51558.1| flhF Signal recognition 54 kDa protein (SRP54) [Xanthomonas
           campestris pv. campestris]
          Length = 590

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 16/201 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+++     A   V L   DT R    +QL  +  +      
Sbjct: 383 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH 442

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++                + +   +++IDTAG    +  L A +  +    +       
Sbjct: 443 EADSAESLLE------LLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQ------- 489

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            + L VL A    + L +V    A A   G+++TK+D T R G  + +VV H++P+ ++ 
Sbjct: 490 VTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 549

Query: 291 VGEGI-NDLEPFVAKDFSAVI 310
            G+ + +DL    A      +
Sbjct: 550 DGQRVPDDLHRANAASLVLRL 570


>gi|315586404|gb|ADU40785.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori 35A]
          Length = 458

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 104/243 (42%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++                    A +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEA------VIDTKDFAKEIE 330

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 331 ALEYCDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|332673259|gb|AEE70076.1| flagellar biosynthesis protein FlhF [Helicobacter pylori 83]
          Length = 458

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 334

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 335 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|315179522|gb|ADT86436.1| flagellar biosynthesis regulator FlhF [Vibrio furnissii NCTC 11218]
          Length = 512

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 64/309 (20%), Positives = 129/309 (41%), Gaps = 22/309 (7%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++ A  + + +  + +   S    L+  ++ ++         RE L  +LI+    + V+
Sbjct: 200 EEEAPANPNELENMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLERMGVS 256

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
             + ++L      +D   Q+    +  L+   + P+ K    D   R  V+ ++G  GVG
Sbjct: 257 LDLADQLACY-IPEDTQPQKAWKALLGLVSDQI-PVVKQ---DILKRGGVVALLGPTGVG 311

Query: 124 KTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           KTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++ A +
Sbjct: 312 KTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNELADV 371

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+       +   ++++DTAG    +  L   +  +++     +         VL AT 
Sbjct: 372 IYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEIIHSYLVLPATA 420

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEP 300
            +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  D+  
Sbjct: 421 QRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNSLPVAYIANGQRVPEDIVI 480

Query: 301 FVAKDFSAV 309
              K   A 
Sbjct: 481 AQPKYMVAK 489


>gi|309388839|gb|ADO76719.1| flagellar biosynthetic protein FlhF [Halanaerobium praevalens DSM
           2228]
          Length = 466

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 129/316 (40%), Gaps = 30/316 (9%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLK-EGITDIISSRRLDDGVREELEDLLIRS-DIG 59
           S  KV +ES +   KLT        K + + I +   + +  + +   L D  + S ++ 
Sbjct: 172 SEAKVETESQN---KLTAA-QKLQNKFQAKNIKNNNKTFKNSNQLYNYLLDHGVESKNVN 227

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +      ++ + +K             ++   +       +K    D S R  ++  +G 
Sbjct: 228 L-----FLKGMKSKLEENQAEFDFE-TNLKNFLEFYFAD-NKEIEIDNSQR--IVSFIGP 278

Query: 120 NGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSD 177
            GVGKTT + K++   + D    V L   DT+R AA++QLK +++     F VC      
Sbjct: 279 TGVGKTTTMAKIAAAFALDKDKNVGLITADTYRIAAVEQLKTYSEIIDIPFAVCYSSSKL 338

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            + +A +          D+++IDT G    +        ++ R+   ++      V  +L
Sbjct: 339 PSLIANQ------FNHCDLILIDTPGSSWRDKE------QLKRLNGYVNHDFIDEVHLLL 386

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
              T    LR +    +       ++TK+D T+  G ++ I   + +P+ +L  G+ +  
Sbjct: 387 SLNTKSRDLRNIISKFSTLNPDKALLTKIDETSSYGDILNIKENYNLPLSYLTCGQDVPE 446

Query: 297 DLEPFVAKDFSAVITG 312
           DLE   ++     + G
Sbjct: 447 DLEIANSETIYKYLFG 462


>gi|317180692|dbj|BAJ58478.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori F32]
          Length = 458

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 334

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 335 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|172059261|ref|YP_001806913.1| flagellar biosynthesis regulator FlhF [Burkholderia ambifaria
           MC40-6]
 gi|171991778|gb|ACB62697.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Burkholderia ambifaria MC40-6]
          Length = 588

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 104/255 (40%), Gaps = 22/255 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L +   A+  + ++       ++   L  L         
Sbjct: 298 LTRHLFSAGFSAQLVRMMVDNLPSGDGAQ--TFEQAAEWAQSVLAANLPVLENE--DALM 353

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 354 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 413

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D           ++ +   +++IDT G    +  L   I  +        
Sbjct: 414 VPVHAVKDAGDLE------LALSELRNKHIVLIDTIGMSQRDRALSDQIAMLH------G 461

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFH----AVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            +AP   L +L+AT+  + L +V   +          G I+TK+D     GG++  V+ +
Sbjct: 462 ANAPVQRLLLLNATSHGDTLNEVVQAYRSAAEYPDLAGCILTKLDEATHLGGVLDTVIRY 521

Query: 283 KIPVYFLGVGEGIND 297
           K+P++++  G+ + +
Sbjct: 522 KLPIHYVSTGQKVPE 536


>gi|327540925|gb|EGF27483.1| flagellar biosynthesis protein FlhF [Rhodopirellula baltica WH47]
          Length = 463

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 111/291 (38%), Gaps = 32/291 (10%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYA------KDVSVQRVLYDVSELIHKMLMPLS 100
           + L   L+++ +  + A++ +    +             S QR +  +   + + L  L 
Sbjct: 173 DSLSLRLLQAGVEESTARRWMASASSFAAGIANSESAVQSDQRWMEHLQRAVAREL-NLC 231

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLK 159
            P       R HV+ +VG  GVGKTT + KL+        + +     DT+R AA+ QLK
Sbjct: 232 GPIRTQPGDR-HVVALVGPTGVGKTTTVAKLAAGFRIEARRRVGLLTIDTYRIAAVQQLK 290

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            +A+         E        A  A        VD+++IDTAGR   +   +  + + +
Sbjct: 291 AYAEIMDLPMQVVEKPEQ-METALSAL-----GDVDLVLIDTAGRSPRSDARIEQLSEFL 344

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           R         P     VL AT+    +R      A      + +TK+D T     ++  +
Sbjct: 345 RA------AHPDETHLVLSATSSGENIRTTLEGFAPVRANAVTLTKLDETPCMASVLAAL 398

Query: 280 ----VTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVIT------GCLDYGEE 319
                    P+ +L  G+ + +D+    A    A +       G  + G E
Sbjct: 399 TGRDRVVAPPLSYLTNGQQVPDDIAVADASGLVAQLLPHMPTAGLGEMGFE 449


>gi|317177224|dbj|BAJ55013.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori F16]
          Length = 458

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 104/243 (42%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++                    A +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEA------VIDTKDFAKEIE 330

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 331 ALEYCDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|308063273|gb|ADO05160.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori Sat464]
          Length = 458

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 334

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 335 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|32475305|ref|NP_868299.1| flagellar biosynthesis protein FlhF [Rhodopirellula baltica SH 1]
 gi|32445846|emb|CAD78577.1| flagellar biosynthesis protein FlhF [Rhodopirellula baltica SH 1]
          Length = 464

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 111/291 (38%), Gaps = 32/291 (10%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYA------KDVSVQRVLYDVSELIHKMLMPLS 100
           + L   L+++ +  + A++ +    +             S QR +  +   + + L  L 
Sbjct: 174 DSLSLRLLQAGVEESTARRWMASASSFAAGIANSESAVQSDQRWMEHLQRAVAREL-NLC 232

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLK 159
            P       R HV+ +VG  GVGKTT + KL+        + +     DT+R AA+ QLK
Sbjct: 233 GPIRTQPGDR-HVVALVGPTGVGKTTTVAKLAAGFRIEARRRVGLLTIDTYRIAAVQQLK 291

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            +A+         E        A  A        VD+++IDTAGR   +   +  + + +
Sbjct: 292 AYAEIMDLPMQVVEKPEQ-METALSAL-----GDVDLVLIDTAGRSPRSDARIEQLSEFL 345

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           R         P     VL AT+    +R      A      + +TK+D T     ++  +
Sbjct: 346 RA------AHPDETHLVLSATSSGENIRTTLEGFAPVRANAVTLTKLDETPCMASVLAAL 399

Query: 280 ----VTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVIT------GCLDYGEE 319
                    P+ +L  G+ + +D+    A    A +       G  + G E
Sbjct: 400 TGRDRVVAPPLSYLTNGQQVPDDIAVADASGLVAQLLPHMPTAGLGEMGFE 450


>gi|308182582|ref|YP_003926709.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori PeCan4]
 gi|308064767|gb|ADO06659.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori PeCan4]
          Length = 458

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 334

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 335 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|260767646|ref|ZP_05876581.1| flagellar biosynthesis protein FlhF [Vibrio furnissii CIP 102972]
 gi|260617155|gb|EEX42339.1| flagellar biosynthesis protein FlhF [Vibrio furnissii CIP 102972]
          Length = 517

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/309 (20%), Positives = 129/309 (41%), Gaps = 22/309 (7%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++ A  + + +  + +   S    L+  ++ ++         RE L  +LI+    + V+
Sbjct: 205 EEEAPANPNELENMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLERMGVS 261

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
             + ++L      +D   Q+    +  L+   + P+ K    D   R  V+ ++G  GVG
Sbjct: 262 LDLADQLACY-IPEDTQPQKAWKALLGLVSDQI-PVVKQ---DILKRGGVVALLGPTGVG 316

Query: 124 KTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           KTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++ A +
Sbjct: 317 KTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNELADV 376

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
            Y+       +   ++++DTAG    +  L   +  +++     +         VL AT 
Sbjct: 377 IYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEIIHSYLVLPATA 425

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEP 300
            +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  D+  
Sbjct: 426 QRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNSLPVAYIANGQRVPEDIVI 485

Query: 301 FVAKDFSAV 309
              K   A 
Sbjct: 486 AQPKYMVAK 494


>gi|154175094|ref|YP_001408773.1| flagellar biosynthesis regulator FlhF [Campylobacter curvus 525.92]
 gi|112802244|gb|EAT99588.1| ATP-dependent DNA helicase RecG [Campylobacter curvus 525.92]
          Length = 458

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 14/193 (7%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG---LKVMLAAGDTFRSAAIDQLKIWADR 164
             +  ++++VG  GVGKTT + KL+ + +       K  +   DT+R  A++QL  +A  
Sbjct: 248 DKKQRIMMLVGPTGVGKTTTLAKLAARFAYGNEKRYKTGIITLDTYRIGAVEQLFQYAKM 307

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                +             +A K       DV++IDT G    +   +  + K ++    
Sbjct: 308 MKLPIL----DVIEVEEFKDAIK--TLSHCDVILIDTTGNSQYDKEKLDKLDKFLK---- 357

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
               A   V  VL A +    L ++    +      LI+TK D T   G +  ++     
Sbjct: 358 -HSGAQIDVNLVLSAGSKVEDLMEIYNGFSFLDIDTLIITKFDETRIFGNVFSLIYETNT 416

Query: 285 PVYFLGVGEGIND 297
           PV +  VG+ + D
Sbjct: 417 PVSYFCVGQEVPD 429


>gi|217033294|ref|ZP_03438725.1| hypothetical protein HP9810_9g47 [Helicobacter pylori 98-10]
 gi|216944235|gb|EEC23660.1| hypothetical protein HP9810_9g47 [Helicobacter pylori 98-10]
          Length = 458

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 104/243 (42%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++                    A +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEA------VIDTKDFAKEIE 330

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +  D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 331 ALEYCDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|160902845|ref|YP_001568426.1| GTP-binding signal recognition particle [Petrotoga mobilis SJ95]
 gi|160360489|gb|ABX32103.1| GTP-binding signal recognition particle SRP54 G- domain [Petrotoga
           mobilis SJ95]
          Length = 438

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 17/278 (6%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L   +  +      +D   ++++D L          +  + +L   +  ++   Q ++  
Sbjct: 166 LMNMVEKLNKKMEANDLYLQDIKDKLYEKSYSRIFIESFLNQLNDLKVEENWQNQEIIRT 225

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             E   K L    +  N  F    + ++ +G  GVGKTT + K++  +     K+ L   
Sbjct: 226 RFE---KKLYQSFEILN--FGDIKNKVMFIGPTGVGKTTTLAKIAANLKKLNKKIALITI 280

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT+R AA DQLK +AD            SD   +A E+         DV++IDTAGR H 
Sbjct: 281 DTYRIAATDQLKTYADILGVSLHICYTPSDL-KIALESL-----LNFDVILIDTAGRSHK 334

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           N++ M  +     V++      P   + ++ + T    +  +    +      LI TKMD
Sbjct: 335 NNLQMGELKVFKDVVE------PDYNIMLVSSNTNCEDMMHIYDNFSYLKPNALIFTKMD 388

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
            T+  G L   +   K+P+  +  G+ + +   F +K+
Sbjct: 389 ETSSYGQLFSFLEYSKLPLLGITDGQRVPEDLKFPSKE 426


>gi|308061764|gb|ADO03652.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori Cuz20]
          Length = 458

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 334

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 335 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|297379633|gb|ADI34520.1| Flagellar biosynthesis protein flhF [Helicobacter pylori v225d]
          Length = 458

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 334

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 335 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|145631516|ref|ZP_01787284.1| Signal recognition particle protein [Haemophilus influenzae R3021]
 gi|144982861|gb|EDJ90378.1| Signal recognition particle protein [Haemophilus influenzae R3021]
          Length = 180

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 11/160 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +K + +    KV++ + D +R AAI QL+  A     DF 
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFF 160


>gi|325474609|gb|EGC77795.1| flagellar biosynthetic protein FlhF [Treponema denticola F0402]
          Length = 446

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 139/346 (40%), Gaps = 39/346 (11%)

Query: 3   NQKVASESLSWIRKLTKGFASTS-----------LKLKEGITDIISSRRLDDGVREELED 51
           ++++A + + +I KL     S+S             L E +  ++   RL +   +E E+
Sbjct: 102 SEEMAEKMMPYIEKLEN--QSSSPIKTDIESKEFKNLAETVERLVEEIRLKNSPSQEHEN 159

Query: 52  L------LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPF 103
           +      L  +D      + I E++       +++   ++    +  +   + + L +  
Sbjct: 160 ISKIAALLEENDFTAKYIRSIKEKISKNLSLAELNDFELVQKKVLDWIASSIQIKLEETN 219

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-------SDAGLKVMLAAGDTFRSAAID 156
           N D S +  +I +VG  G+GKTT + KL+              L V +   D +R  A  
Sbjct: 220 NDDPSKKQKLIALVGPTGIGKTTTLAKLAAYYILAVSKLEKRSLDVRVITIDQYRIGAAF 279

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           Q+K + +      + +    D           A     D++ IDT GR   +   +  + 
Sbjct: 280 QIKKYCEHMGIPLIIATDPLDLHKYLDLYKDSA-----DIICIDTTGRSPTDPEKILEMQ 334

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K    ++            V+ A T    + ++   ++V   + LI+TK+D TA  G +I
Sbjct: 335 KYFDEIEP----GRIETHLVVSAVTKAADIIEIIKQYSVFNFSSLIITKLDETAHVGSII 390

Query: 277 PIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGC-LDYGEEK 320
            ++  +KIPV ++  G+ +  D+           +TG  LDY  E 
Sbjct: 391 SVLDEYKIPVAYITEGQTVPKDIARASKLVLLRKLTGFSLDYINEN 436


>gi|210134607|ref|YP_002301046.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori P12]
 gi|210132575|gb|ACJ07566.1| GTP-binding flagellar biosynthesis protein [Helicobacter pylori
           P12]
          Length = 458

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 334

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 335 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|188527221|ref|YP_001909908.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori Shi470]
 gi|188143461|gb|ACD47878.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori Shi470]
          Length = 459

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 224 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 277

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 278 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 335

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 336 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 385

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 386 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 445

Query: 309 VIT 311
            + 
Sbjct: 446 CML 448


>gi|254491645|ref|ZP_05104824.1| SRP54-type protein, GTPase domain [Methylophaga thiooxidans DMS010]
 gi|224463123|gb|EEF79393.1| SRP54-type protein, GTPase domain [Methylophaga thiooxydans DMS010]
          Length = 400

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 35/302 (11%)

Query: 16  KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL------LIRSDIGVAVAQKIVEE 69
           ++ K  AS    L+  ++D+           +++E        L++  + + V  +I ++
Sbjct: 98  QMRKEIASLRDMLQNQLSDL---------TWKDMERQSPTQMQLLKRFLHMGVEVEIAKQ 148

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +  +    D         +  L  ++ +P     +        +  +VG  GVGKTT I 
Sbjct: 149 ITAQMRGIDDLETAWRQSLGRLAAQIDLPEEDMLSEGG-----IFALVGPTGVGKTTTIA 203

Query: 130 KLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           K++ +  +     +V L   D +R    +QL+ +A         +   S+ A    +   
Sbjct: 204 KMAARCALKYGAREVALVTTDCYRIGGQEQLRSYARILGVPVRVARTHSELAYTLNDLLD 263

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           +        ++IDTAG    +  L      + +   R+           L A T  + + 
Sbjct: 264 RR------FILIDTAGMNQRDMQLTEKFALLKQQSPRV------KTYLTLSANTQASGIN 311

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDF 306
            +    +    +G I+TK D T+  GG +  ++ H++P+ ++  G+ +  DL        
Sbjct: 312 DIINAFSHLDLSGCIVTKTDETSSLGGALSALIRHRLPLAYVANGQQVPEDLSQARPNAL 371

Query: 307 SA 308
             
Sbjct: 372 VN 373


>gi|317179194|dbj|BAJ56982.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori F30]
          Length = 458

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 334

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 335 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|317010687|gb|ADU84434.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori
           SouthAfrica7]
          Length = 457

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 222 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 275

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 276 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 333

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 334 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 383

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L +G+ +  DL+    +    
Sbjct: 384 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSIGQEVPMDLKVATNEYLVD 443

Query: 309 VIT 311
            + 
Sbjct: 444 CML 446


>gi|148380602|ref|YP_001255143.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933547|ref|YP_001384889.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935713|ref|YP_001388358.1| flagellar biosynthesis regulator FlhF [Clostridium botulinum A str.
           Hall]
 gi|148290086|emb|CAL84205.1| putative flagellar biosynthesis protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929591|gb|ABS35091.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931627|gb|ABS37126.1| flagellar biosynthesis protein FlhF [Clostridium botulinum A str.
           Hall]
          Length = 408

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/315 (21%), Positives = 135/315 (42%), Gaps = 31/315 (9%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLL-IRSDIG----------V 60
           + +  +   S S          +  ++  +   + +E+ DL  I  DIG           
Sbjct: 104 LDRYKEILESKSE---GAQNKSLKGKKFSESKDLMDEIRDLKKIVKDIGKSEKSYADENS 160

Query: 61  AVAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           ++ +   + +L  +   + +     L +  E   K+   +    +   +    V ++VG 
Sbjct: 161 SLVKFFKDLDLEEEFIEEIIKKVGNLEENLEEREKIKRVIEDTIDVRVNSVGKVTVLVGP 220

Query: 120 NGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
            GVGKTT I KL+ K+S     KV L   DT+R  A++QLK +AD  +  F         
Sbjct: 221 TGVGKTTTIAKLAGKLSLIDKKKVGLITIDTYRIGAVEQLKTYADIMNIPF------KVV 274

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            ++             DV+++DT GR   N + ++ +   I  +K        SV  V+ 
Sbjct: 275 FSIKDMEKAIIDLDYCDVILVDTTGRSSKNMMQISELRAFIEKIKEK------SVHLVIS 328

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+T    +  +   +++     +I+TK+D T+  G ++ I+   K P+ F+  G+ + +D
Sbjct: 329 ASTKNKDIETIVKGYSILEYENIIITKLDETSIYGSILTILDKGKNPISFITTGQDVPDD 388

Query: 298 LEPFVAKDFSAVITG 312
           ++    ++ + ++ G
Sbjct: 389 IKEGNKEEIAKIVLG 403


>gi|261837845|gb|ACX97611.1| flagellar biosynthesis protein [Helicobacter pylori 51]
          Length = 459

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 224 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 277

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 278 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 335

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 336 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 385

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 386 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 445

Query: 309 VIT 311
            + 
Sbjct: 446 CML 448


>gi|118475040|ref|YP_892642.1| flagellar biosynthesis regulator FlhF [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261885660|ref|ZP_06009699.1| flagellar biosynthesis regulator FlhF [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118414266|gb|ABK82686.1| flagellar biosynthesis protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 435

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 99/237 (41%), Gaps = 24/237 (10%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG---LKVMLAAG 147
           L+  ML   S+      S +  +++ VG  GVGKTT + KL+ K + +G    K  +   
Sbjct: 212 LLRNMLPCRSESLE---SKKQRIMMFVGPTGVGKTTTLSKLAYKFAHSGDIRYKTGIITL 268

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK--KVDVLIIDTAGRL 205
           DT+R  A++QL  +A   S             A+  E FK A       D+++IDT G  
Sbjct: 269 DTYRLGAVEQLFQYAKIMSIPI--------LDAIELEDFKSALKSLASCDLILIDTMGSS 320

Query: 206 HNNSI-LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
             +   L+   G +     ++D      V  VL A +    L ++    +      LI+T
Sbjct: 321 QYDKDKLIKLNGFLKGCGTKID------VNLVLSAGSKIEDLIEIYNNFSFLDIDTLIIT 374

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEEK 320
           K D T   G +  +V     PV F   G+ + +D+    ++     +    + G+E 
Sbjct: 375 KFDETKIFGNVFSLVYDTNTPVSFFSTGQNVPDDIMEAKSEFLVQCVLDGFNKGDED 431


>gi|254246772|ref|ZP_04940093.1| Flagellar GTP-binding protein [Burkholderia cenocepacia PC184]
 gi|124871548|gb|EAY63264.1| Flagellar GTP-binding protein [Burkholderia cenocepacia PC184]
          Length = 421

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 106/255 (41%), Gaps = 22/255 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L +   A+  +  +       ++   L  L         
Sbjct: 131 LTKHLFAAGFSAQLVRMLVDNLPSGDGAQ--TFDQAAEWAQSVLASNLPVLDSE--DALM 186

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 187 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 246

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D       A   ++ +   +++IDT G    +  +   I  +        
Sbjct: 247 VPVHAVKDAGDL------ALALSELRNKHIVLIDTIGMSQRDRAVSDQIAMLH------G 294

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARGGGLIPIVVTH 282
            +AP   L +L+AT+  + L +V   +  AG      G I+TK+D     GG++  V+ +
Sbjct: 295 ANAPVQRLLLLNATSHGDTLNEVVQAYRSAGEHPDLAGCILTKLDEATHLGGVLDTVIRY 354

Query: 283 KIPVYFLGVGEGIND 297
           K+PV+++  G+ + +
Sbjct: 355 KLPVHYVSTGQKVPE 369


>gi|308184216|ref|YP_003928349.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori SJM180]
 gi|308060136|gb|ADO02032.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori SJM180]
          Length = 458

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 334

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 335 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|315638328|ref|ZP_07893508.1| flagellar biosynthesis (GTP-binding) protein FlhF [Campylobacter
           upsaliensis JV21]
 gi|315481595|gb|EFU72219.1| flagellar biosynthesis (GTP-binding) protein FlhF [Campylobacter
           upsaliensis JV21]
          Length = 453

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 14/206 (6%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +  ++++VG  GVGKTT + KL+ + +      K  +   DT+R  A++QL  +A    
Sbjct: 250 KKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMK 309

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              + S    D      EA K   +   +V+++DT G    +   +A   + +     + 
Sbjct: 310 LPIIDSIEPKDLD----EAIKSLSS--CEVILVDTIGNSQYDQTKLAKTKEFL-----MH 358

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            +A   V  V+ A T    L ++    +      LI+TK D T   G +  ++    +P+
Sbjct: 359 SNAEIDVNLVISANTKYEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYEINVPL 418

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVIT 311
            F  VG+ + +D+E   +      I 
Sbjct: 419 SFFSVGQEVPDDIEVANSDFLVHCIL 444


>gi|42528186|ref|NP_973284.1| flagellar biosynthetic protein FlhF [Treponema denticola ATCC
           35405]
 gi|41819456|gb|AAS13203.1| flagellar biosynthetic protein FlhF [Treponema denticola ATCC
           35405]
          Length = 446

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 139/346 (40%), Gaps = 39/346 (11%)

Query: 3   NQKVASESLSWIRKLTKGFASTS-----------LKLKEGITDIISSRRLDDGVREELED 51
           ++++A + + +I KL     S+S             L E +  ++   RL +   +E E+
Sbjct: 102 SEEMAEKMMPYIEKLEN--QSSSPIKTDIESKEFKNLAETVERLVEEIRLKNSPSQEHEN 159

Query: 52  L------LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPF 103
           +      L  +D      + I E++       +++   ++    +  +   + + L +  
Sbjct: 160 ISKIAALLEENDFTAKYIRSIKEKISKNLSLAELNDFELVQKKVLDWIASSIQIKLEETN 219

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-------SDAGLKVMLAAGDTFRSAAID 156
           N D S +  +I +VG  G+GKTT + KL+              L V +   D +R  A  
Sbjct: 220 NDDPSKKQKLIALVGPTGIGKTTTLAKLAAYYILAVSKLEKRSLDVRVITIDQYRIGAAF 279

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           Q+K + +      + +    D           A     D++ IDT GR   +   +  + 
Sbjct: 280 QIKKYCEHMGIPLIIATDPLDLHKYLDLYKDSA-----DIICIDTTGRSPTDPEKILEMQ 334

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           K    ++            V+ A T    + ++   ++V   + LI+TK+D TA  G +I
Sbjct: 335 KYFDEIEP----GRIETHLVVSAVTKAADIIEIIKQYSVFNFSSLIITKLDETAHVGSII 390

Query: 277 PIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGC-LDYGEEK 320
            ++  +KIPV ++  G+ +  D+           +TG  LDY  E 
Sbjct: 391 SVLDEYKIPVAYITEGQTVPKDIARASKLVLLRKLTGFSLDYINEN 436


>gi|325067025|ref|ZP_08125698.1| signal recognition particle protein [Actinomyces oris K20]
          Length = 391

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 6/138 (4%)

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            A+A    + A+    DV+++DTAGRL  ++ +M         ++  D  +PH +L VLD
Sbjct: 1   MAVARSGVEHARTNGYDVVVVDTAGRLGVDAEMMDQ------AIRIRDAVSPHEILFVLD 54

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
           A  GQ+A+     F    G TG++++K+DG ARGG  + +      PV F   GEG+ D 
Sbjct: 55  AMVGQDAVNTSVAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGAPVLFSSTGEGLTDF 114

Query: 299 EPFVAKDFSAVITGCLDY 316
           E F A   ++ I    D 
Sbjct: 115 ERFHADRMASRILDMGDL 132


>gi|153828897|ref|ZP_01981564.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae
           623-39]
 gi|148875603|gb|EDL73738.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae
           623-39]
          Length = 455

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 127/317 (40%), Gaps = 33/317 (10%)

Query: 3   NQKVASESL---SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR---- 55
           ++KV  E +   S +  + +   S    L+  ++ ++         RE L  +LI+    
Sbjct: 139 DRKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLER 195

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
             + + +A ++          ++    +    +  L+   +  +      D   R  V+ 
Sbjct: 196 MGVSLEMADQL-----ACYIPEETPPPKAWKALLGLVSDQIPVV----KHDILKRGGVVA 246

Query: 116 VVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++
Sbjct: 247 LLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAK 306

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             ++ A + Y+       +   ++++DTAG    +  L   +  +++     +       
Sbjct: 307 DSNELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGETIHS 355

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             VL AT  +  L++          +G IMTK+D     G  + +VV + +PV ++  G+
Sbjct: 356 YLVLPATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQ 415

Query: 294 GIN-DLEPFVAKDFSAV 309
            +  D+     K   A 
Sbjct: 416 RVPEDIVIAQPKYMVAK 432


>gi|108562837|ref|YP_627153.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori HPAG1]
 gi|107836610|gb|ABF84479.1| GTP-binding flagellar biosynthesis protein [Helicobacter pylori
           HPAG1]
          Length = 459

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 224 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 277

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 278 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 335

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 336 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 385

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 386 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 445

Query: 309 VIT 311
            + 
Sbjct: 446 CML 448


>gi|325928016|ref|ZP_08189233.1| flagellar GTP-binding protein [Xanthomonas perforans 91-118]
 gi|325541612|gb|EGD13137.1| flagellar GTP-binding protein [Xanthomonas perforans 91-118]
          Length = 335

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 16/243 (6%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           LT+  A  +     L+    L+  +L         D   R  VI +VG  G GKTT I K
Sbjct: 86  LTRDIALQIPADTELHRGRGLMLGLLSKRLPVSPVDPLERGGVIALVGPTGAGKTTTIAK 145

Query: 131 LSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           L+++     A   V L   DT R    +QL  +  +       ++               
Sbjct: 146 LAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLD------LL 199

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            + +   +++IDTAG    +  L A +  +             + L VL A    + L +
Sbjct: 200 ERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-------QQVTSLLVLPANAHFSDLDE 252

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFS 307
           V    A A   G+++TK+D T R G  + +VV H++P+ ++  G+ + +DL    A    
Sbjct: 253 VVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLV 312

Query: 308 AVI 310
             +
Sbjct: 313 LRL 315


>gi|208434358|ref|YP_002266024.1| GTP-binding flagellar biosynthesis protein [Helicobacter pylori
           G27]
 gi|208432287|gb|ACI27158.1| GTP-binding flagellar biosynthesis protein [Helicobacter pylori
           G27]
          Length = 456

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 221 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 274

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 275 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 332

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 333 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 382

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 383 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 442

Query: 309 VIT 311
            + 
Sbjct: 443 CML 445


>gi|330961238|gb|EGH61498.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 442

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 21/223 (9%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-- 135
           D   Q     ++ L   + +P  +P          VI +VG  G+GKTT + KL+ +   
Sbjct: 194 DEPRQAWRMLLAHLARMIAVPDVEPLEEGG-----VIAMVGPAGMGKTTTLAKLAARYVL 248

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                 + L + D+FR  A +QLK      +      + G        +A +    K+  
Sbjct: 249 KYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVTHIDPGQSLV----QALEPLLRKR-- 302

Query: 196 VLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           V++IDTAG   ++  L   +  +  R +K  +         VL  T+ +  L      + 
Sbjct: 303 VVLIDTAGLQASDPALRMQLESLAGRGIKSRN-------YLVLATTSQKQVLTAAYHSYK 355

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             G  G I+TK+D TA  G ++ + ++H++PV +L  G  I D
Sbjct: 356 RCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPD 398


>gi|21231356|ref|NP_637273.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768591|ref|YP_243353.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113017|gb|AAM41197.1| flagellar biosynthetic protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573923|gb|AAY49333.1| flagellar biosynthetic protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 555

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 16/201 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+++     A   V L   DT R    +QL  +  +      
Sbjct: 348 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH 407

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++                + +   +++IDTAG    +  L A +  +    +       
Sbjct: 408 EADSAESLLE------LLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQ------- 454

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            + L VL A    + L +V    A A   G+++TK+D T R G  + +VV H++P+ ++ 
Sbjct: 455 VTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 514

Query: 291 VGEGI-NDLEPFVAKDFSAVI 310
            G+ + +DL    A      +
Sbjct: 515 DGQRVPDDLHRANAASLVLRL 535


>gi|317012251|gb|ADU82859.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori
           Lithuania75]
          Length = 458

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 334

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 335 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|170731606|ref|YP_001763553.1| flagellar biosynthesis regulator FlhF [Burkholderia cenocepacia
           MC0-3]
 gi|169814848|gb|ACA89431.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia cenocepacia MC0-3]
          Length = 582

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 107/255 (41%), Gaps = 22/255 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L +   A+  + ++       ++   L  L         
Sbjct: 292 LTKHLFAAGFSAQLVRMLVDNLPSGDGAQ--TFEQAAEWAQSVLASNLPVLDSE--DALM 347

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 348 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 407

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D       A   ++ +   +++IDT G    +  +   I  +        
Sbjct: 408 VPVHAVKDAGDL------ALALSELRNKHIVLIDTIGMSQRDRAVSDQIAMLH------G 455

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARGGGLIPIVVTH 282
            +AP   L +L+AT+  + L +V   +  AG      G I+TK+D     GG++  V+ +
Sbjct: 456 ANAPVQRLLLLNATSHGDTLNEVVQAYRSAGDHPDLAGCILTKLDEATHLGGVLDTVIRY 515

Query: 283 KIPVYFLGVGEGIND 297
           K+PV+++  G+ + +
Sbjct: 516 KLPVHYVSTGQKVPE 530


>gi|52080243|ref|YP_079034.1| flagellar biosynthesis regulator FlhF [Bacillus licheniformis ATCC
           14580]
 gi|52785620|ref|YP_091449.1| flagellar biosynthesis regulator FlhF [Bacillus licheniformis ATCC
           14580]
 gi|319645978|ref|ZP_08000208.1| FlhF protein [Bacillus sp. BT1B_CT2]
 gi|52003454|gb|AAU23396.1| flagella-associated protein [Bacillus licheniformis ATCC 14580]
 gi|52348122|gb|AAU40756.1| FlhF [Bacillus licheniformis ATCC 14580]
 gi|317391728|gb|EFV72525.1| FlhF protein [Bacillus sp. BT1B_CT2]
          Length = 370

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 108/242 (44%), Gaps = 17/242 (7%)

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           R  ++ + ++ L  +++ +  +L         D +     +++ G  GVGKTT + KL+ 
Sbjct: 144 RDGEEWTDEKTLAHLTDALADLLPD---NLEQDVAIHSQYVVLFGSTGVGKTTTLAKLAA 200

Query: 134 K-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             + +   K+     DT+R AA++QL+ +A+  +A         +  A       Q +  
Sbjct: 201 SSVLEKQKKIAFITTDTYRIAAVEQLRTYAELLNAPLEVCYTKEEFKA------AQQKFA 254

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             D + IDTAGR   +   +  + ++I   +++          V+ AT+    ++++   
Sbjct: 255 DFDHVFIDTAGRNFKDGQYVRELKEIIPFERKIQA------FLVMSATSKYEDMKELIKQ 308

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
            +      LI TK+D T   G ++ ++   +I + ++  G+ +  D+       F  ++T
Sbjct: 309 FSSIPIDQLIFTKVDETDSLGSVMNLLAESRIGLGYITNGQNVPEDIRYLSNAAFVRLLT 368

Query: 312 GC 313
           GC
Sbjct: 369 GC 370


>gi|115350239|ref|YP_772078.1| flagellar biosynthesis regulator FlhF [Burkholderia ambifaria AMMD]
 gi|115280227|gb|ABI85744.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Burkholderia ambifaria AMMD]
          Length = 588

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 104/255 (40%), Gaps = 22/255 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L +   A+  + ++       ++   L  L         
Sbjct: 298 LTKHLFSAGFSAQLVRMMVDNLPSGDGAQ--TFEQAAEWAQSVLAANLPVLENE--DALM 353

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 354 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 413

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D           ++ +   +++IDT G    +  L   I  +        
Sbjct: 414 VPVHAVKDAGDLE------LALSELRNKHIVLIDTIGMSQRDRALSDQIAMLH------G 461

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFH----AVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            +AP   L +L+AT+  + L +V   +          G I+TK+D     GG++  V+ +
Sbjct: 462 ANAPVQRLLLLNATSHGDTLNEVVQAYRSAAEYPDLAGCILTKLDEATHLGGVLDTVIRY 521

Query: 283 KIPVYFLGVGEGIND 297
           K+P++++  G+ + +
Sbjct: 522 KLPIHYVSTGQKVPE 536


>gi|325524166|gb|EGD02312.1| flagellar biosynthesis regulator FlhF [Burkholderia sp. TJI49]
          Length = 330

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 104/260 (40%), Gaps = 27/260 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L     A+  S    +     ++   L  L         
Sbjct: 35  LTRHLFAAGFSAQLVRMLVDNLPAGDGAQ--SFDAAVEWAQSVLAANLPVLGSE--DALM 90

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 91  ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 150

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D       A   ++ +   +++IDT G    +  +   I  +        
Sbjct: 151 VPVHAVKDAGDL------ALALSELRNKHIVLIDTIGMSQRDRAVSDQIAMLH------G 198

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG---------TTGLIMTKMDGTARGGGLIP 277
            +AP   L +L+AT+  + L +V   +  AG           G I+TK+D     GG + 
Sbjct: 199 ANAPVQRLLLLNATSHGDTLNEVVQAYRSAGQHPHAAAPDLAGCILTKLDEATHLGGALD 258

Query: 278 IVVTHKIPVYFLGVGEGIND 297
            V+ +K+PV+++  G+ + +
Sbjct: 259 TVIRYKLPVHYVSTGQKVPE 278


>gi|3913656|sp|O52256|FLHF_PSEPU RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|7677123|gb|AAF67042.1|AF183382_2 flagellar protein FlhF [Pseudomonas putida]
 gi|2853595|gb|AAC08059.1| FlhF [Pseudomonas putida]
          Length = 437

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 118/292 (40%), Gaps = 34/292 (11%)

Query: 14  IRKLTKGFASTSLKLKEGITDII-----SSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              +    +     L+  +  +       S+     +   L+ + +       +A+++++
Sbjct: 129 FDAMRSELSGLRELLEVQLGSLAWSQLQGSKPQQANLWRRLQRIGLSG----PIARELLD 184

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            L  +      + + +L  ++ +I    +P  +P          VI +VG  G+GKTT +
Sbjct: 185 -LTAEIEEPRQAWRMLLAHLARMID---IPEIEPIEEGG-----VIAMVGPAGMGKTTTL 235

Query: 129 GKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            KL+ +         + L + D+FR  A +QLK      +      + G   AA      
Sbjct: 236 AKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVTYVDPGQSLAAALEPLL 295

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQNA 245
           ++       V++IDTAG   ++  L   +  +  R +   +         VL  T+ +  
Sbjct: 296 RKR------VVLIDTAGLQASDPALRMQLETLAGRGIAAKN-------YLVLATTSQKQV 342

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           L      +   G  G I+TK+D TA  G ++ + ++H++PV +L  G  I D
Sbjct: 343 LTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPVAYLTDGPRIPD 394


>gi|330964677|gb|EGH64937.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 442

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHA 229
             + G        +A +    K+  V++IDTAG   ++  L   +  +  R +K  +   
Sbjct: 284 HVDPGQSLV----QALEPLLRKR--VVLIDTAGLQASDPALRMQLESLAGRGIKSRN--- 334

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L
Sbjct: 335 ----YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYL 390

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 391 TDGPRIPD 398


>gi|28869181|ref|NP_791800.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967542|ref|ZP_03395690.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv.
           tomato T1]
 gi|301382879|ref|ZP_07231297.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           tomato Max13]
 gi|302062795|ref|ZP_07254336.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           tomato K40]
 gi|302131295|ref|ZP_07257285.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28852421|gb|AAO55495.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927843|gb|EEB61390.1| flagellar biosynthesis protein FlhF [Pseudomonas syringae pv.
           tomato T1]
 gi|331016987|gb|EGH97043.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 442

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHA 229
             + G        +A +    K+  V++IDTAG   ++  L   +  +  R +K  +   
Sbjct: 284 HVDPGQSLV----QALEPLLRKR--VVLIDTAGLQASDPALRMQLESLAGRGIKSRN--- 334

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L
Sbjct: 335 ----YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYL 390

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 391 TDGPRIPD 398


>gi|330876036|gb|EGH10185.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 442

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHA 229
             + G        +A +    K+  V++IDTAG   ++  L   +  +  R +K  +   
Sbjct: 284 HVDPGQSLV----QALEPLLRKR--VVLIDTAGLQASDPALRMQLESLAGRGIKSRN--- 334

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L
Sbjct: 335 ----YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYL 390

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 391 TDGPRIPD 398


>gi|307718619|ref|YP_003874151.1| flagellar-associated GTP-binding protein [Spirochaeta thermophila
           DSM 6192]
 gi|306532344|gb|ADN01878.1| flagellar-associated GTP-binding protein [Spirochaeta thermophila
           DSM 6192]
 gi|315186368|gb|EFU20128.1| flagellar biosynthetic protein FlhF [Spirochaeta thermophila DSM
           6578]
          Length = 385

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 118/306 (38%), Gaps = 30/306 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE-----LEDLLIRSDIGVAVAQKIVEELLTKRY 75
                 +L + I + I    + +  +E      L  +L  +        + +E+   +R 
Sbjct: 91  LEKVLSELAQ-IKENIQRGTVREDEKEHEHIRRLRAMLEEA----EFTDRYIEK-TIRRI 144

Query: 76  AKDVSVQR--VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             ++++Q+      + +L+ + +    + +   F+ RP + ++VG  GVGKTT I KL+ 
Sbjct: 145 RDELTLQQIEDFALLQKLVVQWVRESIRIYPLKFTRRPEIFILVGPTGVGKTTTIAKLAA 204

Query: 134 KMSDA-----GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
                        V +   D +R AA  Q++ +A+       C E   +         + 
Sbjct: 205 MYGLGLEDNIRYDVRIITIDNYRIAARQQIETYANIMGIPVACVESYEELER------QV 258

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
              + VD++ +DT G+   +   +A +  M+                 L ATT    +  
Sbjct: 259 RLFQDVDIIFVDTIGKSPRDYRKLADMKDMLEACGSRA-----QTHLALSATTKTADIYT 313

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFS 307
           V         T +++TK+D T   G +I ++     P+ F+  G+ +  D+         
Sbjct: 314 VLQQFEPFNYTSVVLTKLDETTTVGNIISVLEEKGKPISFITNGQAVPHDIAAATPAKLL 373

Query: 308 AVITGC 313
           A + G 
Sbjct: 374 AAVRGF 379


>gi|15611457|ref|NP_223108.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori J99]
 gi|12230112|sp|Q9ZM34|FLHF_HELPJ RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|4154928|gb|AAD05976.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
          Length = 455

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ K++  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 220 RMRENSVTIKRYFR---EVLRKII--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 273

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 274 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 331

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 332 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 381

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 382 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 441

Query: 309 VIT 311
            + 
Sbjct: 442 CML 444


>gi|157165253|ref|YP_001467216.1| flagellar biosynthesis regulator FlhF [Campylobacter concisus
           13826]
 gi|112802034|gb|EAT99378.1| flagellar biosynthesis protein [Campylobacter concisus 13826]
          Length = 452

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 16/223 (7%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           VS++     V    + +L  +          +  ++++VG  GVGKTT + KL+ + +  
Sbjct: 216 VSMKSNPTAVKRYFYSLLRNMLPCRKELGDKKQRIMMLVGPTGVGKTTTLAKLAARFAYG 275

Query: 139 G---LKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKV 194
                K  +   DT+R  A++QL  +A       +   E+     A+        Q    
Sbjct: 276 NEKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPILDVIEVEDFQNAI-------KQLSYC 328

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           DV++IDT G    +   +  + K ++        A   V  VL A +    L ++    +
Sbjct: 329 DVILIDTTGNSQYDKEKLERLDKFLK-----HSGAKIDVNLVLSAGSKVEDLIEIYNGFS 383

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                 LI+TK D T   G +  ++     PV +  VG+ + D
Sbjct: 384 FLQIDTLIITKFDETKIFGNVFSLIYETNTPVSYFSVGQEVPD 426


>gi|313672890|ref|YP_004051001.1| flagellar biosynthetic protein flhf [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939646|gb|ADR18838.1| flagellar biosynthetic protein FlhF [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 390

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 124/271 (45%), Gaps = 18/271 (6%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           +   +E+  LL ++ +   +  K ++++   R   +    +    + +L+ + L+P+ K 
Sbjct: 127 EPHLKEIYQLLTKNGVDEMIVYKFLKKV-ENRVPANTGKMQTKNIIMQLLSE-LIPVEKD 184

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIW 161
           +      +  V+ +VG  GVGKTT I K++  ++     KV L + DTFR  A++QLK +
Sbjct: 185 YFSSIRQK--VLALVGPTGVGKTTTIAKIAANLALKLQKKVCLISVDTFRIGAVEQLKTY 242

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           ++        +   +D   +  E       K  D +++D+ GR   ++  ++ + K    
Sbjct: 243 SEIIDVPLYVASNPADLDEIIGEV------KHYDYILLDSMGRSQFDTEQISELKKF--- 293

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
              +D     SV  V+  ++    L  +   +A      +I TK+D T   G L+ I + 
Sbjct: 294 ---MDVSPLISVALVMSMSSNHIELYDIYDRYARLMPNFVIFTKLDETRYFGPLVNIPLI 350

Query: 282 HKIPVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
            KIP+  L  G+ + +D+E    K  + ++ 
Sbjct: 351 KKIPIMLLSTGQNVPDDMEIPDGKKIAKMVL 381


>gi|254779104|ref|YP_003057209.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori B38]
 gi|254001015|emb|CAX28959.1| Flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Helicobacter pylori B38]
          Length = 457

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 222 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 275

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 276 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 333

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 334 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 383

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 384 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 443

Query: 309 VIT 311
            + 
Sbjct: 444 CML 446


>gi|206558547|ref|YP_002229307.1| flagellar biosynthesis regulator FlhF [Burkholderia cenocepacia
           J2315]
 gi|198034584|emb|CAR50450.1| putative flagellar biosynthesis protein [Burkholderia cenocepacia
           J2315]
          Length = 599

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 106/255 (41%), Gaps = 22/255 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L +   A+  +  +       ++   L  L         
Sbjct: 309 LTKHLFAAGFSAQLVRMLVDNLPSGDGAQ--TFGQAAEWAQSVLASNLPVLDSE--DALM 364

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 365 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 424

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D       A   ++ +   +++IDT G    +  +   I  +        
Sbjct: 425 VPVHAVKDAGDL------ALALSELRNKHIVLIDTIGMSQRDRAVSDQIAMLH------G 472

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARGGGLIPIVVTH 282
            +AP   L +L+AT+  + L +V   +  AG      G I+TK+D     GG++  V+ +
Sbjct: 473 ANAPVQRLLLLNATSHGDTLNEVVQAYRSAGEHPDLAGCILTKLDEATHLGGVLDTVIRY 532

Query: 283 KIPVYFLGVGEGIND 297
           K+PV+++  G+ + +
Sbjct: 533 KLPVHYVSTGQKVPE 547


>gi|255322023|ref|ZP_05363173.1| glutamine synthetase 1 [Campylobacter showae RM3277]
 gi|255301127|gb|EET80394.1| glutamine synthetase 1 [Campylobacter showae RM3277]
          Length = 488

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 22/238 (9%)

Query: 64  QKI-VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            KI VE +  +  A   +V+R     S L+ KML   S+  +     +  ++++VG  GV
Sbjct: 245 MKITVENMSPQMKANPTAVRRYF---SSLLRKMLPCRSEEDD----RKQKIMMLVGPTGV 297

Query: 123 GKTTVIGKLSKKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           GKTT + KL+ + +       K  +   DT+R  A++QL  +A       +      D  
Sbjct: 298 GKTTTLAKLAARFAYGDGKRAKTGIITLDTYRIGAVEQLFQYAKMMKLPILDVIEVDDFK 357

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
                A KQ      +V++IDT G    +   ++ + K ++            V  VL A
Sbjct: 358 ----NALKQ--LNHCEVILIDTTGSSQYDKEKLSRLEKFLKS-----SDTHIDVHLVLSA 406

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                 + ++    +      LI+TK D T   G +  +V     PV F  VG+ + D
Sbjct: 407 GAKIEDMLEIYNGFSFLDIDTLIITKFDETKIFGNVFSLVYETNKPVSFFSVGQEVPD 464


>gi|325288794|ref|YP_004264975.1| flagellar biosynthetic protein FlhF [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964195|gb|ADY54974.1| flagellar biosynthetic protein FlhF [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 396

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 113/256 (44%), Gaps = 22/256 (8%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGV 122
           Q + E L      K +  + V+ DV  L  +++   S        S    V+ ++G  GV
Sbjct: 158 QYLCENLSASLGEKQLENKEVVLDV--LRRQIMKICSNTDIIKPKSSETMVVALIGPTGV 215

Query: 123 GKTTVIGKLSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           GKTT IGKL+   S     KV L   DT+R AA++QL+ + +                A+
Sbjct: 216 GKTTTIGKLAAGFSIIDRRKVALVTADTYRVAAVEQLRTFGEIIGVPV--------EIAM 267

Query: 182 AYEAFKQAQAKKVD--VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
             +  ++A  +  D  ++ IDTAGR  ++   M+ + K +         +P   + V+  
Sbjct: 268 TPDDLQEAIKRHSDKELVFIDTAGRSPHHEAHMSELQKFLE------KASPDLTMLVMSV 321

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDL 298
           TT  +   +V         T LI+TK+D +   G ++ +V    +P+ +L  G+ + +D+
Sbjct: 322 TTNADDQAKVLEKFKKYS-THLILTKLDESTHLGSILDLVTKTPLPIAYLTNGQNVPDDI 380

Query: 299 EPFVAKDFSAVITGCL 314
           E    +  +  I G  
Sbjct: 381 EAATPEKLAQSILGEG 396


>gi|295678069|ref|YP_003606593.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1002]
 gi|295437912|gb|ADG17082.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1002]
          Length = 662

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 112/284 (39%), Gaps = 25/284 (8%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            +S    ++E    ++   R+     R  L   L  +     + Q +V+ L       D 
Sbjct: 345 LSSMRDMMEEQFAGLLWGDRQRRSPARAALTKHLFAAGFSAQLVQMLVDNLPEAVDTMDG 404

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137
            +      V  ++   L  +          R  V  ++G  GVGKTT   KL+ +  M  
Sbjct: 405 GMDW----VRSVLESNLPVMENE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMRF 458

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV L   D++R    +QL+I+           +        A      ++ +   ++
Sbjct: 459 GASKVALLTTDSYRIGGHEQLRIFGKILGVSVHAVKDS------ADLQLALSELRNKHIV 512

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDT G    + ++   I  + R         P   L +L+AT+  + L +V   +  A 
Sbjct: 513 LIDTIGMSQRDRLVSDQIAMLSRA------GQPVQRLLLLNATSHGDTLNEVVQAYQRAP 566

Query: 258 ----TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                 G I+TK+D     GG++  V+ +K+PV+++  G+ + +
Sbjct: 567 DQQPLAGCILTKLDEATNLGGVLDTVIRYKLPVHYVSTGQKVPE 610


>gi|261839260|gb|ACX99025.1| hypothetical protein HPKB_0417 [Helicobacter pylori 52]
          Length = 435

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 200 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 253

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 254 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 311

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 312 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 361

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L +G+ +  DL+    +    
Sbjct: 362 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSIGQEVPMDLKVATNEYLVD 421

Query: 309 VIT 311
            + 
Sbjct: 422 CML 424


>gi|270589333|ref|ZP_06221440.1| signal recognition particle protein [Haemophilus influenzae HK1212]
 gi|270318457|gb|EFA29565.1| signal recognition particle protein [Haemophilus influenzae HK1212]
          Length = 150

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           +K + +    KV++ + D +R AAI QL+  A     DF  S++  +   +A EA   A+
Sbjct: 1   AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKEALAGAK 60

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            K  DVLI+DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    +
Sbjct: 61  LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAK 114

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            F+     TG+++TK+DG ARGG  + I      P+
Sbjct: 115 AFNEALPLTGVVLTKVDGDARGGAALSIRQITGKPI 150


>gi|149927787|ref|ZP_01916038.1| flagellar biosynthesis regulator FlhF [Limnobacter sp. MED105]
 gi|149823409|gb|EDM82640.1| flagellar biosynthesis regulator FlhF [Limnobacter sp. MED105]
          Length = 444

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/312 (22%), Positives = 133/312 (42%), Gaps = 29/312 (9%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGV-REELEDLLIRSDIGV 60
           ++  +ASE  + + ++ +        LK+ +  I     L+    R EL + L +S    
Sbjct: 129 ASDSMASEQTAVLEEIKQ----MRQLLKDQMAMITWRDALEKNPQRGELWNQLTQSGFSP 184

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             A+ +VE+L       D+S  +V   V  +I K L  +  P N D         +VG  
Sbjct: 185 LFARTVVEKL-----PADLSDSQVQDWVMNVIKKNLNVV--PANKDIVETGGTFALVGPT 237

Query: 121 GVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GVGKTT   KL+ +         + L   D++R  A DQL+I+          ++     
Sbjct: 238 GVGKTTTTAKLAARCVVKYGADSLGLITTDSYRIGAQDQLRIYGKILGVQVYTAQTH--- 294

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
              A  A  +   ++  +++IDT G    +S +            ++   +    + +L+
Sbjct: 295 ---ADLAQLRNTMQRKRLILIDTVGMGQRDSRVAEQ--------TKILTDSHVKRVLLLN 343

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-D 297
           AT+    L  V   +   G +G I++K+D   + GG++ +V+ HK+ ++++  G+ +  D
Sbjct: 344 ATSQPETLDDVVRHYKSTGLSGAILSKLDEAIKIGGVLDVVMRHKLALHYIATGQRVPED 403

Query: 298 LEPFVAKDFSAV 309
           L P   +     
Sbjct: 404 LFPADPRVLVHR 415


>gi|57241946|ref|ZP_00369886.1| flagellar biosynthesis protein FlhF, putative [Campylobacter
           upsaliensis RM3195]
 gi|57017138|gb|EAL53919.1| flagellar biosynthesis protein FlhF, putative [Campylobacter
           upsaliensis RM3195]
          Length = 453

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 103/249 (41%), Gaps = 23/249 (9%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV-VGVNGVGKT 125
           +E + T       +VQR  +    L+  +L     P   +   +   I++ VG  GVGKT
Sbjct: 215 IENMPTTMKMNKEAVQRYFHS---LLRNIL-----PCRVETDIKKQKIMMLVGPTGVGKT 266

Query: 126 TVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           T + KL+ + +      K  +   DT+R  A++QL  +A       + S    D      
Sbjct: 267 TTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPIIDSIEPKDLD---- 322

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           EA K   +   +V+++DT G    +   +A   + +     +  +A   V  V+ A T  
Sbjct: 323 EAIKSLSS--CEVILVDTIGNSQYDQTKLAKTKEFL-----MHSNAEIDVNLVISANTKY 375

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFV 302
             L ++    +      LI+TK D T   G +  ++    +P+ F  +G+ + +D+E   
Sbjct: 376 EDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYEINVPLSFFSMGQEVPDDIEVAN 435

Query: 303 AKDFSAVIT 311
           +      I 
Sbjct: 436 SDFLVHCIL 444


>gi|313618322|gb|EFR90367.1| signal recognition particle-docking protein FtsY [Listeria innocua
           FSL S4-378]
          Length = 139

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/127 (48%), Positives = 86/127 (67%)

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + ++A + A+A+K D+L+ DTAGRL N   LM  + K+ RV+ R  P+APH VL VLDAT
Sbjct: 1   VMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLVLDAT 60

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA  Q + F      TG+I+TK+DGTA+GG +I I     IPV F+G+GE ++DL+ 
Sbjct: 61  TGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMDDLQA 120

Query: 301 FVAKDFS 307
           F A ++ 
Sbjct: 121 FDANEYV 127


>gi|168180931|ref|ZP_02615595.1| flagellar biosynthesis protein FlhF [Clostridium botulinum NCTC
           2916]
 gi|182668293|gb|EDT80272.1| flagellar biosynthesis protein FlhF [Clostridium botulinum NCTC
           2916]
          Length = 408

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 16/204 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169
            V ++VG  GVGKTT I KL+ K+S     KV L   DT+R  A++QLK +AD  +  F 
Sbjct: 213 KVTVLVGPTGVGKTTTIAKLAGKLSLIDKKKVGLITIDTYRIGAVEQLKTYADIMNIPFK 272

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V   I     A+             D +++DT GR   N + ++ +   I  +K      
Sbjct: 273 VVFSIKDMEKAIIDLG-------YCDAILVDTTGRSSKNMMQISELRAFIEKIKEK---- 321

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
             SV  V+ A+T    +  +   +++     +I+TK+D T+  G ++ I+   K P+ F+
Sbjct: 322 --SVHLVISASTKNKDIETIIKGYSILEYENIIITKLDETSIYGSILTILDKGKKPISFI 379

Query: 290 GVGEGI-NDLEPFVAKDFSAVITG 312
             G+ + +D++    ++ + ++ G
Sbjct: 380 TTGQDVPDDIKEGNKEEIAKIVLG 403


>gi|32266642|ref|NP_860674.1| flagellar biosynthesis regulator FlhF [Helicobacter hepaticus ATCC
           51449]
 gi|32262693|gb|AAP77740.1| flagellar GTP-binding protein FlhF [Helicobacter hepaticus ATCC
           51449]
          Length = 483

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 19/214 (8%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLA 145
            E++ KM+    +P N   + +  +I++VG  GVGKTT + KL+ + S   +   +V + 
Sbjct: 263 REVLRKMI--YCRPENLQSNAK-KIIMLVGPTGVGKTTTLAKLAARYSLMLNQRYRVGVV 319

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             DT+R AA+DQL  +A              +    A ++ K       D ++IDTAG  
Sbjct: 320 TLDTYRLAAVDQLMAYARMMKLSIDTVVEPEEFGK-AIDSLK-----HCDYILIDTAGHS 373

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            ++   +  +   +    ++D      V  VL        LR      +      LI +K
Sbjct: 374 QHDRSKLQALKSYLNNDYKID------VSLVLAINAKYEDLRDTYNAFSEMNIDTLIFSK 427

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DL 298
           +D +   G +  +V   K P+ +L +G+G+  DL
Sbjct: 428 LDESRNFGNMFSLVYETKKPISYLSIGQGVPNDL 461


>gi|326791521|ref|YP_004309342.1| GTP-binding signal recognition particle SRP54 G- domain
           [Clostridium lentocellum DSM 5427]
 gi|326542285|gb|ADZ84144.1| GTP-binding signal recognition particle SRP54 G- domain
           [Clostridium lentocellum DSM 5427]
          Length = 381

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 137/322 (42%), Gaps = 35/322 (10%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKE-GITDIISSRRLDDGVREE-------LEDLL 53
           SN+K+  ES   +  L         ++       +   +  D+   E        L+  L
Sbjct: 79  SNEKLKEESYEVLLGLKDQLNQLQREIGTIKQVQLEDKKDSDNDTLEADNKWLNYLKAKL 138

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           ++  +G+   ++I  + L      D S + ++  +   + K L    +           +
Sbjct: 139 VQ--LGLK--EEICTQYLEGMS--DESPEEMIRKIYSELEKSLREKEE------KDLAQI 186

Query: 114 ILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I  +G  GVGKTT + KL +K + +   KV+L   DT+R AA++QLK +AD    +    
Sbjct: 187 IFFIGSTGVGKTTTLAKLTAKYVLEEHKKVVLFTADTYRIAAVEQLKTYADILGVEIEVI 246

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              ++            + K +D ++IDTAGR H N   +  +  +++ + +        
Sbjct: 247 YNEAELPQYIE------KWKHMDYILIDTAGRSHKNEEQVKELKALMKNVDKK------Q 294

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTT-GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
           V  VL+A+T    +  +   +  A +   LI+TK+D T   G ++ I      P+ +L  
Sbjct: 295 VFLVLNASTAAKDVVTIVNTYEKAESEFDLIITKLDETDEIGNVVNIGYYANKPIMYLTN 354

Query: 292 GEGIN-DLEPFVAKDFSAVITG 312
           G+ +  D++ F   ++   + G
Sbjct: 355 GQNVPADIKIFNKDEYITDLLG 376


>gi|157363485|ref|YP_001470252.1| flagellar biosynthesis regulator FlhF [Thermotoga lettingae TMO]
 gi|157314089|gb|ABV33188.1| GTP-binding signal recognition particle SRP54 G- domain [Thermotoga
           lettingae TMO]
          Length = 367

 Score =  139 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 14/199 (7%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCS 172
           +L VG  GVGKTT + K++ K+     K +     DT+R AA +QLK +A         +
Sbjct: 170 VLFVGPTGVGKTTTLAKIAAKLKLIHKKQVAILTLDTYRIAATEQLKTYAAIMDIPMRVA 229

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               +A        +       DV++IDTAGR  NN I M+ +  ++  +       P  
Sbjct: 230 YTPKEAK------LELDAMHDFDVILIDTAGRSQNNDIQMSELRALVETIT------PSV 277

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
              V+      + L+ +     VA  T  I+TKMD T   G +I I     IP+ ++  G
Sbjct: 278 CFLVVGMNCKYSDLKDIVKKFDVAKYTHTILTKMDETRSYGHIINISQLSGIPLAYITNG 337

Query: 293 EGIN-DLEPFVAKDFSAVI 310
           + +  D+    +++ S ++
Sbjct: 338 QRVPEDIIEANSRELSHIL 356


>gi|229544413|ref|ZP_04433471.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Bacillus coagulans 36D1]
 gi|229324898|gb|EEN90575.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Bacillus coagulans 36D1]
          Length = 375

 Score =  139 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 99/245 (40%), Gaps = 19/245 (7%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           ++   +++   +L     L+ K L        +  S + +V L +G  GVGKTT + K++
Sbjct: 147 EKANGNLTENEILKQAKALLQKKLA----HLTYGGSQKKYVNL-IGPTGVGKTTTLAKMA 201

Query: 133 KKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            +       K+     DT+R AAI+QLK +A+  +         SD       A ++   
Sbjct: 202 AQAVLEKKEKIAFITTDTYRIAAIEQLKTYANLLNVPLEVVYKLSDFKK----AIEKFSD 257

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D + IDTAGR +     +  +  +I      D HA       L  T  +  ++ V  
Sbjct: 258 --FDRVFIDTAGRNYRELQYVRELSGLI------DFHAEMETFLTLSLTMKEKDMKAVFD 309

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVI 310
                     I TK+D T+  G  I ++  +     ++  G+ + +D+       F+  +
Sbjct: 310 SFQSIRIDRFIFTKLDETSTYGAAINLMEQYGKGCAYVTNGQDVPDDMLEATPGIFAEYV 369

Query: 311 TGCLD 315
            G  D
Sbjct: 370 FGEND 374


>gi|78064849|ref|YP_367618.1| flagellar biosynthesis regulator FlhF [Burkholderia sp. 383]
 gi|77965594|gb|ABB06974.1| GTP-binding signal recognition particle SRP54, G-domain protein
           [Burkholderia sp. 383]
          Length = 587

 Score =  139 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 106/255 (41%), Gaps = 22/255 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ +     A+  + ++       ++   L  L         
Sbjct: 297 LTKHLFAAGFSAQLVRMLVDNMPAGDGAQ--TFEQATEWAQSVLASNLPVLESE--DALM 352

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 353 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 412

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D       A   ++ +   +++IDT G    +  +   I  +        
Sbjct: 413 VPVHAVKDAGDL------ALALSELRNKHIVLIDTIGMSQRDRAVSDQIAMLH------G 460

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARGGGLIPIVVTH 282
            +AP   L +L+AT+  + L +V   +  AG      G I+TK+D     GG++  V+ +
Sbjct: 461 ANAPVQRLLLLNATSHGDTLNEVVQAYRSAGEHPDLAGCILTKLDEATHLGGVLDTVIRY 520

Query: 283 KIPVYFLGVGEGIND 297
           K+P++++  G+ + +
Sbjct: 521 KLPIHYVSTGQKVPE 535


>gi|89073428|ref|ZP_01159951.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
 gi|89050692|gb|EAR56173.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
          Length = 511

 Score =  139 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 89/200 (44%), Gaps = 14/200 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT I KL+ +  M     ++ L   DT+R  A +QL  +         
Sbjct: 293 VVALLGPTGVGKTTTIAKLAARAAMEFGPEQIALVTTDTYRIGAHEQLATYGRIMGCPVR 352

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++   + A + ++       +   ++++DTAG    +  L   +  +++     +  A 
Sbjct: 353 VAKDAEELADILHQ------LRHRRLVLLDTAGMGQRDIRLSEQLDTLMK-----NSGAH 401

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                V+ AT+ +  L++          +G ++TK+D +   G +I + + + +P+ +L 
Sbjct: 402 IRSYLVMPATSQRRVLQETIEHFRRIPLSGCVLTKLDESLSLGEIICVAIQNALPIAYLA 461

Query: 291 VGEGIN-DLEPFVAKDFSAV 309
            G+ +  D++        + 
Sbjct: 462 DGQRVPEDIKIASGNYIVSR 481


>gi|317013855|gb|ADU81291.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori
           Gambia94/24]
          Length = 456

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM+  L +P + +   +  ++++VG  GVGKTT + KL+
Sbjct: 221 RMRENSVTIKRYFR---EVLRKMI--LCRPEDLNLRQK-RILMLVGPTGVGKTTTLAKLA 274

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 275 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 332

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 333 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 382

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L +G+ +  DL+    +    
Sbjct: 383 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSIGQEVPMDLKVATNEYLVD 442

Query: 309 VIT 311
            + 
Sbjct: 443 CML 445


>gi|217031642|ref|ZP_03437147.1| hypothetical protein HPB128_21g200 [Helicobacter pylori B128]
 gi|298736648|ref|YP_003729174.1| flagellar biosynthesis protein FlhF [Helicobacter pylori B8]
 gi|216946842|gb|EEC25438.1| hypothetical protein HPB128_21g200 [Helicobacter pylori B128]
 gi|298355838|emb|CBI66710.1| flagellar biosynthesis protein FlhF [Helicobacter pylori B8]
          Length = 458

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM++   +  N        ++++VG  GVGKTT + KL+
Sbjct: 223 RMRENSVTIKRYFR---EVLRKMILCCPEDLNLRQKR---ILMLVGPTGVGKTTTLAKLA 276

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 277 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 334

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 335 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 384

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 385 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 444

Query: 309 VIT 311
            + 
Sbjct: 445 CML 447


>gi|224437146|ref|ZP_03658127.1| flagellar biosynthesis regulator FlhF [Helicobacter cinaedi CCUG
           18818]
 gi|313143609|ref|ZP_07805802.1| flagellar GTP-binding protein FlhF [Helicobacter cinaedi CCUG
           18818]
 gi|313128640|gb|EFR46257.1| flagellar GTP-binding protein FlhF [Helicobacter cinaedi CCUG
           18818]
          Length = 513

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 21/237 (8%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---DAGLKVMLA 145
            E++ KM+   S+  N +      ++++VG  GVGKTT + KL+ + S   +   +V + 
Sbjct: 293 REVLRKMIYCRSENLNNNDKK---IMMLVGPTGVGKTTTLAKLAARYSLMLNKRYRVGVI 349

Query: 146 AGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
             DT+R AA+DQL  +A           E      A+          K  D ++IDTAG 
Sbjct: 350 TLDTYRLAAVDQLMAYARMMKLSIDTVVEPEELPKAI-------DSLKHCDYILIDTAGH 402

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
             ++       GK+  +   L+      +  VL        L+      +      LI +
Sbjct: 403 SQHDR------GKLQNIKSYLNTDYKIDISLVLALNAKYEDLKDTYNAFSELNIDTLIFS 456

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLDYGEEK 320
           K+D +   G +  +V   K P+ +L +G+G+  DL           +       E K
Sbjct: 457 KLDESRNFGNMFSLVYDTKKPISYLSIGQGVPNDLILASNDYLVDCLLDGFKRPESK 513


>gi|15645649|ref|NP_207825.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori 26695]
 gi|3913654|sp|O25679|FLHF_HELPY RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|2314179|gb|AAD08078.1| flagellar biosynthesis protein (flhF) [Helicobacter pylori 26695]
          Length = 459

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 22/243 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V+++R      E++ KM++   +  N        ++++VG  GVGKTT + KL+
Sbjct: 224 RMRENSVTIKRYFR---EVLRKMILCCPEDLNLRQKR---ILMLVGPTGVGKTTTLAKLA 277

Query: 133 KKMSD---AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            + S       KV +   D +R  A++QL  +A++         I +   A   EA +  
Sbjct: 278 ARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAV-IDAKDFAKEIEALEY- 335

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                D +++DT G    +   +AG+ + I      D      V  VL  TT    ++ +
Sbjct: 336 ----CDFILVDTTGHSQYDKEKIAGLKEFI------DGGYNIDVSLVLSVTTKYEDMKDI 385

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
                V G   LI TK+D +   G L  +V   + P+ +L VG+ +  DL+    +    
Sbjct: 386 YDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVD 445

Query: 309 VIT 311
            + 
Sbjct: 446 CML 448


>gi|260772377|ref|ZP_05881293.1| flagellar biosynthesis protein FlhF [Vibrio metschnikovii CIP
           69.14]
 gi|260611516|gb|EEX36719.1| flagellar biosynthesis protein FlhF [Vibrio metschnikovii CIP
           69.14]
          Length = 488

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 112/267 (41%), Gaps = 19/267 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + V+ ++ ++L      ++    +    +  L+   +  + K    
Sbjct: 215 REPLRAMLIKRLERMGVSLELADQLACY-IPEETPPPKAWKALLGLVSDQIPVVKK---- 269

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 270 DILQRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALITTDTYRIGAHEQLSIYGR 329

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++   + A + ++       +   ++++DTAG    +  L   +  +++   
Sbjct: 330 IMGCPVRVAKDSKELADVIHQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ--- 380

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             +         VL AT  +  L++          +G IMTK+D     G  + +VV + 
Sbjct: 381 --ESDEVIHSYLVLPATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNA 438

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +PV ++  G+ +  D+     K   A 
Sbjct: 439 LPVAYIANGQRVPEDIVIAQPKYMVAK 465


>gi|157738157|ref|YP_001490841.1| flagellar biosynthesis (GTP-binding) protein FlhF [Arcobacter
           butzleri RM4018]
 gi|315636300|ref|ZP_07891550.1| flagellar biosynthesis (GTP-binding) protein FlhF [Arcobacter
           butzleri JV22]
 gi|157700011|gb|ABV68171.1| flagellar biosynthesis (GTP-binding) protein FlhF [Arcobacter
           butzleri RM4018]
 gi|315479389|gb|EFU70072.1| flagellar biosynthesis (GTP-binding) protein FlhF [Arcobacter
           butzleri JV22]
          Length = 383

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 14/221 (6%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-- 137
           S    + D  +LI + ++P+          R  +I++VG  GVGKTT I KL+ + +   
Sbjct: 152 SNPNKINDFFKLILRRVIPIKHEVPLRPQQR-KIIMMVGPTGVGKTTTISKLAARYAYKL 210

Query: 138 -AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV +   D+FR  A++QL+ + +         E+      LA       + K  + 
Sbjct: 211 GQNYKVGIVTLDSFRVGAVEQLQAYTNIMRLPL---EVVKKPDDLAEALL---RLKDCNY 264

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           + IDTAG    +   +     +I   ++     P   + VL A    + L ++   +++ 
Sbjct: 265 IFIDTAGSSQYDIDKIE----LINDYQKKVEELPIEKILVLPANVKHSDLLEIYKNYSIL 320

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
               L  TK+D T   G LI      K  + +  +G+ + D
Sbjct: 321 DIDYLTFTKLDETRSFGNLISFAHKTKKSITYFSIGQNVPD 361


>gi|222823274|ref|YP_002574847.1| flagellar biosynthesis (GTP-binding) protein FlhF [Campylobacter
           lari RM2100]
 gi|222538495|gb|ACM63596.1| flagellar biosynthesis (GTP-binding) protein FlhF [Campylobacter
           lari RM2100]
          Length = 461

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 100/249 (40%), Gaps = 23/249 (9%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV-VGVNGVGKT 125
           +E + +   A   +VQR  Y    L+  ML     P   +   +   I++ VG  GVGKT
Sbjct: 223 IENMPSTMKANQEAVQRYFYS---LLRNML-----PCRIESEIKKQKIMMLVGPTGVGKT 274

Query: 126 TVIGKLSKKMSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           T + KL+ + +      K  +   DT+R  A++QL  +A       + S   +D      
Sbjct: 275 TTLAKLAFRYAYGDRRYKTGIITLDTYRIGAVEQLFQYAKMMKLPIIDSIEPTDLD---- 330

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A +       +V+++DT G    +   +    + +        +A   V  VL A T  
Sbjct: 331 DAIR--SLNTCEVILVDTTGNSQYDKAKLEKTKEFLS-----HSNAQIDVNLVLSANTKY 383

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFV 302
             L +     +      LI+TK D T   G +  ++     P+ F  +G+ + +D+E   
Sbjct: 384 EDLLETYNNFSFLNIDTLIITKFDETKVFGNVFSLLYETSTPMSFFSIGQEVPDDIEIAN 443

Query: 303 AKDFSAVIT 311
           +      + 
Sbjct: 444 SDFLVRCVL 452


>gi|292669762|ref|ZP_06603188.1| flagellar biosynthesis protein FlhF [Selenomonas noxia ATCC 43541]
 gi|292648559|gb|EFF66531.1| flagellar biosynthesis protein FlhF [Selenomonas noxia ATCC 43541]
          Length = 457

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 116/276 (42%), Gaps = 38/276 (13%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           + D L R D+     +++ E+L  K    DV++  +    + ++   L  + K F     
Sbjct: 205 IRDALRRQDVH----EELCEDLSGKISITDVNLDSLDSRAAGVLAGYLTQVMK-FTDGLR 259

Query: 109 HRPHVILVVGVNGVGKTTVI-----------GKLSKKM-SDAGLKVMLAAGDTFRSAAID 156
             PH   VV          I            K++     +  LK  L   DT+R +A++
Sbjct: 260 LSPHGSRVVAF--------IGTTGVGKTTTLAKIAAHFVLEQNLKGALITADTYRISAVE 311

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           QLK +A+            +D       A  + ++K  D +++DTAGR   N   M  + 
Sbjct: 312 QLKKYAEILGLPVEVVYSAADLRK----AITRHRSK--DFVLVDTAGRSQYNEFQMDELK 365

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
           +++    R++ H       V+ ATT +    ++    +V     +I TK D T   G ++
Sbjct: 366 ELLMAHPRMEKH------LVVSATTKEQDAAEIIDRFSVCAPNRIIFTKTDETRSIGMVL 419

Query: 277 PIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
            ++   ++P+ FL  G+ + +D+ P  A+  + ++ 
Sbjct: 420 NLLAQRELPLSFLSNGQSVPDDIIPATAERLAELLL 455


>gi|15606450|ref|NP_213830.1| flagellar biosynthesis FlhF [Aquifex aeolicus VF5]
 gi|3913659|sp|O67266|FLHF_AQUAE RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|2983662|gb|AAC07228.1| flagellar biosynthesis FlhF [Aquifex aeolicus VF5]
          Length = 373

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 112/266 (42%), Gaps = 24/266 (9%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL----IHKMLMPLSKPFNWD 106
           + L+  +I   +A+KI+++      A    +   +YD  +     + + +    K     
Sbjct: 114 EKLVIKNISKNIAEKIIQD------ACGYDIDNKIYDFKDEPYTSLRESIEKNIKLNEEF 167

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
             + P V+ +VG  GVGKTT + KL+        KV + + D FR  A +QLK +A+   
Sbjct: 168 IQNPPKVVALVGPTGVGKTTTLAKLAHLFKKNKKKVGIISLDCFRVGAFEQLKAFAEVLE 227

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             F   ++     A   +  +       DV+++DTAGR H + I +  +    +V     
Sbjct: 228 VPF---KLADSPRAFNIQLLEM---DDRDVILVDTAGRSHYDVIRLKELETYFKV----- 276

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             +  SV   L A   +  + +  M   +   +GLI TK+D T   G ++ +    + PV
Sbjct: 277 --SDISVYLTLAANLSELVMYEAIMQFGMFSISGLIFTKLDETPYPGSMVNVAYRTQYPV 334

Query: 287 YFLGVGEGIN-DLEPFVAKDFSAVIT 311
               +G+ I  D+          +I 
Sbjct: 335 VCFTMGQSIPEDIVVANYDYLVRLIL 360


>gi|170722832|ref|YP_001750520.1| flagellar biosynthesis regulator FlhF [Pseudomonas putida W619]
 gi|169760835|gb|ACA74151.1| GTP-binding signal recognition particle SRP54 G- domain
           [Pseudomonas putida W619]
          Length = 435

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D+FR  A +QLK      +    
Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHA 229
             + G   A    +A +    K+  V++IDTAG   ++  L   +  +  R +   +   
Sbjct: 278 YVDPGQSLA----QALEPLLRKR--VVLIDTAGLQASDPALRMQLESLASRGIASKN--- 328

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L
Sbjct: 329 ----YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPVAYL 384

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 385 TDGPRIPD 392


>gi|74055049|gb|AAZ95854.1| FlhF [Aeromonas hydrophila]
          Length = 472

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 117/280 (41%), Gaps = 23/280 (8%)

Query: 46  REELEDLLIR--SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           RE +  LLI+    IG        ++L      +D+S+ + +  ++E++   L    K  
Sbjct: 193 REPMRALLIKELKKIGFD--DAFADQLAG-LIPEDMSIHQAMAQLAEVLTAQL----KIS 245

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIW 161
             D   +   + ++G  GVGK T I KL+ +        +V L   D +R  A +QL+ +
Sbjct: 246 EDDILRQGGAVALLGPTGVGKATTIAKLAARFAMKYGAEQVALITTDNYRIGAHEQLQTY 305

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                          DA  LA   ++    +   +++IDTAG    +  L   +  +++ 
Sbjct: 306 GRIMGCPV---RQVRDAEELANALYQFRHRR---LVLIDTAGVGQRDIRLTEQLDTLVKN 359

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
            K            V+ AT+ +  +++          +G I+TK+D +   G +I + + 
Sbjct: 360 AKVRI-----RSYLVMSATSQRRVMQEAVDHFRRIPLSGCILTKLDESLNLGEVINVCIQ 414

Query: 282 HKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLDYGEEK 320
           + +P+ ++  G+ +  D++   A        G L+   E+
Sbjct: 415 NALPISYITDGQRVPEDIQVANAAQLVGAAMGSLERETEE 454


>gi|296330855|ref|ZP_06873330.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674373|ref|YP_003866045.1| the export of flagella GTPase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296151860|gb|EFG92734.1| flagellar biosynthesis regulator FlhF [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412617|gb|ADM37736.1| GTPase involved in the export of flagella [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 366

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 23/253 (9%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              + + L     A  ++ + V   + +++   L    K   W        I++ G  G 
Sbjct: 130 TSALKKLLRCSVEAGGLTEENVAGKLQDILCDTLPSADK---WQEPIHSKYIVLFGSTGA 186

Query: 123 GKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---FVCSEIGSDA 178
           GKTT + KL+   M +   K+     DT+R AA++QLK +A+   A        E    A
Sbjct: 187 GKTTTLAKLAAISMLEKQKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQA 246

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             L  E          D + IDTAGR       +  + + I         +      VL 
Sbjct: 247 KELFSE---------YDHVFIDTAGRNFKEQQYIDELKETIPF------ESSIQSFLVLS 291

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-D 297
           AT     ++ +    +       I TK+D T   G +  I+   KI   F+  G+ +  D
Sbjct: 292 ATAKYEDMKHIVKRFSSVPVNQFIFTKIDETTSLGSVFNILAESKIGAGFITNGQNVPED 351

Query: 298 LEPFVAKDFSAVI 310
           ++     DF  ++
Sbjct: 352 IQTVSPLDFVRML 364


>gi|88858093|ref|ZP_01132735.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2]
 gi|88819710|gb|EAR29523.1| flagellar biosynthesis protein [Pseudoalteromonas tunicata D2]
          Length = 471

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 98/254 (38%), Gaps = 22/254 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL--------IHKMLMPLSKPFNWDFSHRPHVILVVG 118
           V+ L     + +V+ Q   +   ++        + +M+       N +      V  +VG
Sbjct: 201 VDRLKGMGISSEVAEQMACFIPDDVSEKKAWQALLEMVQSQLYTSNNEILRNGGVFALVG 260

Query: 119 VNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
             GVGKTT + KL+          K+ L   DT+R  A +QL  +           +  +
Sbjct: 261 PTGVGKTTTVAKLAALGAQKFGADKIALITTDTYRIGAYEQLATYGRIIGCPVKQVKDAN 320

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           + A + Y        +   +++IDTAG    +  L   +  +++     +         V
Sbjct: 321 ELAEMLYH------LRNKRLVLIDTAGMSQRDLRLTEQLNTLMK-----NARVDIRSYLV 369

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           L AT     L++          +G I TK+D     G +I I + +++P+ +L  G+ + 
Sbjct: 370 LSATAQHEVLQETVKHFKKVHLSGCIFTKLDECLSLGEIISIAIQNRLPIGYLTNGQRVP 429

Query: 297 -DLEPFVAKDFSAV 309
            D+    A+     
Sbjct: 430 EDIRVANAEKLVKK 443


>gi|325295405|ref|YP_004281919.1| flagellar biosynthetic protein FlhF [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065853|gb|ADY73860.1| flagellar biosynthetic protein FlhF [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 376

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 23/272 (8%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNW 105
           EL  +LI+  +     + I EEL+ +    D+  +++      L   ++  + K   F  
Sbjct: 120 ELIKVLIQKGVK----KNIAEELVKEACGLDIETEKLDLSTPTLKGALIKGIEKHIEFRG 175

Query: 106 DFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIW 161
           +FS +P   ++I  VG  GVGKTT + K++ +      LKV +   DTF+  A+ Q + +
Sbjct: 176 EFSIKPGEKNIIAFVGPTGVGKTTNLFKIASRFVIEKDLKVGVITTDTFKVGAVQQARTY 235

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A   +  F                   ++ + +DV+ IDT GR H +   +  I  ++  
Sbjct: 236 ASILNIPFFVVTDSKKLKETV------SKMENLDVIFIDTVGRSHYDYWRLGEIKAILSA 289

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +        +  L +        A+  V  +        +  TK+D T+  G LI I V 
Sbjct: 290 IN------LNVTLLISCNYKTSEAVEIVNRYRTFFPIDSIFFTKIDETSFPGILINIPVL 343

Query: 282 HKIPVYFLGVGEGIN-DLEPFVAKDFSAVITG 312
             +PV ++  G+ +  D++    +  +  I G
Sbjct: 344 TGLPVSYISTGQRVPEDVKLLTTETIADYILG 375


>gi|254226077|ref|ZP_04919675.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae V51]
 gi|125621389|gb|EAZ49725.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae V51]
          Length = 482

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 129/313 (41%), Gaps = 25/313 (7%)

Query: 3   NQKVASESL---SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           ++KV  E +   S +  + +   S    L+  ++ ++         RE L  +LI+    
Sbjct: 166 DRKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLER 222

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + V+ ++ ++L      ++    +    +  L+   +  +      D   R  V+ ++G 
Sbjct: 223 MGVSLEMADQLACY-IPEETPPPKAWKALLGLVSDQIPVV----KHDILKRGGVVALLGP 277

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++
Sbjct: 278 TGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNE 337

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A + Y+       +   ++++DTAG    +  L   +  +++     +         VL
Sbjct: 338 LADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGETIHSYLVL 386

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  
Sbjct: 387 PATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPE 446

Query: 297 DLEPFVAKDFSAV 309
           D+     K   A 
Sbjct: 447 DIVIAQPKYMVAK 459


>gi|17549611|ref|NP_522951.1| flagellar biosynthesis regulator FlhF [Ralstonia solanacearum
           GMI1000]
 gi|17431865|emb|CAD18543.1| probable flagellar biosynthetic protein flhf [Ralstonia
           solanacearum GMI1000]
          Length = 615

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 119/292 (40%), Gaps = 22/292 (7%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E+ +  R++          L + ++ + S   +L D VR  L   ++ +     + + ++
Sbjct: 291 ETDAMTRRMVGEIEVLKSTLTDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQLTRYVL 350

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + +         +    L  V   + K L  +  P       +  V  ++G  GVGKTT 
Sbjct: 351 DNMPQHG-----TYDSALDFVQRALEKNLTVV--PNENSLLDQGGVFALMGPTGVGKTTT 403

Query: 128 IGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
             KL+ +  +     +V L + D++R    +QL+I+           +   D       +
Sbjct: 404 TAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILGVTVHAVKDAQDL------S 457

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                 ++  V++IDT G    +  +   +  +  V   +        L +L+AT+    
Sbjct: 458 LALGDLREKHVVLIDTIGMSQRDRAVSEQMAMLHAVGPSI------KRLLLLNATSNGKT 511

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           L +V   +  A   G I+TK+D  A  G  +  ++ H++P++++  G+ + +
Sbjct: 512 LDEVVSAYRDANLAGCILTKIDEAASVGHAMDAMIRHRLPLHYVSYGQRVPE 563


>gi|170701721|ref|ZP_02892660.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia ambifaria IOP40-10]
 gi|170133384|gb|EDT01773.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia ambifaria IOP40-10]
          Length = 374

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 104/255 (40%), Gaps = 22/255 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L +   A+  + ++       ++   L  L         
Sbjct: 84  LTRHLFSAGFSAQLVRMMVDNLPSGDGAQ--TFEQAAEWAQSVLAANLPVLENE--DALM 139

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 140 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 199

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D           ++ +   +++IDT G    +  L   I  +        
Sbjct: 200 VPVHAVKDAGDLE------LALSELRNKHIVLIDTIGMSQRDRALSDQIAMLH------G 247

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFH----AVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            +AP   L +L+AT+  + L +V   +          G I+TK+D     GG++  V+ +
Sbjct: 248 ANAPVQRLLLLNATSHGDTLNEVVQAYRSAAEYPDLAGCILTKLDEATHLGGVLDTVIRY 307

Query: 283 KIPVYFLGVGEGIND 297
           K+PV+++  G+ + +
Sbjct: 308 KLPVHYVSTGQKVPE 322


>gi|229827379|ref|ZP_04453448.1| hypothetical protein GCWU000182_02767 [Abiotrophia defectiva ATCC
           49176]
 gi|229788317|gb|EEP24431.1| hypothetical protein GCWU000182_02767 [Abiotrophia defectiva ATCC
           49176]
          Length = 419

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 110/265 (41%), Gaps = 15/265 (5%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           +   LI +++      +I  E+      KD  + R+L  V + +   L   S        
Sbjct: 167 IHRQLINNEVDEKYVNEITSEI-ESTIKKDAQLDRILGAVYQKLVLKLGQPS--LVDITP 223

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            +   +  +G  GVGKTT I K++          V L   DT+R AA++QL+ +A+    
Sbjct: 224 GKTKYVFFLGPTGVGKTTTIAKIASSFKLKEKRSVGLLTADTYRIAAVEQLRTYANILGI 283

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                   S+          + +  + +V+++DTAGR   N   +A + +++  +    P
Sbjct: 284 PLSVVYSASEIEE------ARKELDRYEVVLVDTAGRSDKNKEQIAELKRLLNAI----P 333

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
                V  VL ATT  N L ++   +       LI TK+D T   G +  I++     + 
Sbjct: 334 EEDREVYLVLSATTKYNDLTRITDVYKNVARYKLIFTKVDETGTIGNIYNILMYTGADLS 393

Query: 288 FLGVGEGI-NDLEPFVAKDFSAVIT 311
           ++  G+ + +D+     +  +  + 
Sbjct: 394 YMTFGQNVPDDIGAADTQAIAKQLL 418


>gi|90579942|ref|ZP_01235750.1| flagellar biosynthesis protein [Vibrio angustum S14]
 gi|90438827|gb|EAS64010.1| flagellar biosynthesis protein [Vibrio angustum S14]
          Length = 558

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 89/200 (44%), Gaps = 14/200 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT I KL+ +  M     ++ L   DT+R  A +QL  +         
Sbjct: 340 VVALLGPTGVGKTTTIAKLAARAAMEFGPDQIALVTTDTYRIGAHEQLATYGRIMGCPVR 399

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++   + A + ++       +   ++++DTAG    +  L   +  +++     +  A 
Sbjct: 400 VAKDAEELADILHQ------LRHRRLVLLDTAGMGQRDIRLSEQLDTLMK-----NSGAH 448

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                V+ AT+ +  L++          +G ++TK+D +   G +I + + + +P+ +L 
Sbjct: 449 IRSYLVMPATSQRRVLQETIEHFRRIPLSGCVLTKLDESLSLGEIICVAIQNALPIAYLA 508

Query: 291 VGEGIN-DLEPFVAKDFSAV 309
            G+ +  D++        + 
Sbjct: 509 DGQRVPEDIKIASGNYLVSR 528


>gi|300694353|ref|YP_003750326.1| flagellar biosynthetic protein flhf [Ralstonia solanacearum PSI07]
 gi|299076390|emb|CBJ35706.1| putative flagellar biosynthetic protein flhF [Ralstonia
           solanacearum PSI07]
          Length = 607

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 121/292 (41%), Gaps = 22/292 (7%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E+ +  R++    A     L + ++ + S   +L D VR  L   ++ +     + + ++
Sbjct: 283 ETDAMTRRMVGEIAVLKSTLTDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQLTRYVL 342

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + +         +    L  V   + K L  +  P       +  V  ++G  GVGKTT 
Sbjct: 343 DNMPQHG-----TYDSALDFVQRALEKNLSVV--PDENSLLDQGGVFALMGPTGVGKTTT 395

Query: 128 IGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
             KL+ +  +     +V L + D++R    +QL+I+           +   D       +
Sbjct: 396 TAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILGVTVHAVKDAQDL------S 449

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                 ++  V++IDT G    +  +   +  +  V   +        L +L+AT+    
Sbjct: 450 LALGDLREKHVVLIDTIGMSQRDRAVSEQMAMLHAVGPSI------KRLLLLNATSNGKT 503

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           L +V   +  A   G I+TK+D  A  G  + +++ H++P++++  G+ + +
Sbjct: 504 LDEVVSAYRDANLAGCILTKIDEAASVGHAMDVMIRHRLPLHYVSYGQRVPE 555


>gi|114320143|ref|YP_741826.1| GTP-binding signal recognition particle [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226537|gb|ABI56336.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 466

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 112/259 (43%), Gaps = 26/259 (10%)

Query: 56  SDIGV--AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           +D+G+   VA+++ + +  +    +         ++ +I + L    +    D   +  V
Sbjct: 200 ADMGMGSDVARRLADHIPAEAEPGEA----WARALA-IIERNL----QVAEDDILEQGGV 250

Query: 114 ILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           + +VG  GVGKTT + KL+ +  +     +V L + DTFR  A DQL+ +A         
Sbjct: 251 MALVGPTGVGKTTTVAKLAARFALKHGRDQVALVSTDTFRIGAQDQLRNFASILQVPVYN 310

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +  G + A +      +       ++++DTAG    +  L      +    +RL      
Sbjct: 311 AASGEELAGVLENLDDKR------LVLVDTAGMSQRDVRLAEQFTALRESSRRL------ 358

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
               VL A T  + L +     AVA   G I TK+D     GGL+ + +  ++P+ +LG 
Sbjct: 359 RTCLVLSAATQLSTLTESMRAFAVAEPQGCIFTKLDEATSLGGLLTVALRSRLPIAWLGT 418

Query: 292 GEGIN-DLEPFVAKDFSAV 309
           G+ +  DLE       + +
Sbjct: 419 GQRVPEDLEVARGDRLAEL 437


>gi|223041121|ref|ZP_03611376.1| flagellar biosynthetic protein FlhF [Campylobacter rectus RM3267]
 gi|222877615|gb|EEF12741.1| flagellar biosynthetic protein FlhF [Campylobacter rectus RM3267]
          Length = 468

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 18/210 (8%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD---AGLKVMLAAG 147
           L+ KML   S+  N     +  ++++VG  GVGKTT + KL+ + +       K  +   
Sbjct: 251 LLRKMLPCRSEEDN----RKQKIMMLVGPTGVGKTTTLAKLAARFAYGEGRRAKTGIITL 306

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT+R  A++QL  +A       +      D       A KQ      +V++IDT G    
Sbjct: 307 DTYRIGAVEQLFQYAKMMKLPILDVIEVEDFK----NALKQ--LNHCEVILIDTTGSSQY 360

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +   +A +   ++        A   V  VL A +  + + ++    +      LI+TK D
Sbjct: 361 DKEKLARLEMFLK-----HSDAQIDVNLVLSAGSKIDDMLEIYNGFSFLDIDTLIITKFD 415

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            T   G +  +V     PV F  +G+ + D
Sbjct: 416 ETKIFGNVFSLVYEINKPVSFFCLGQEVPD 445


>gi|254522702|ref|ZP_05134757.1| flagellar biosynthetic protein FlhF [Stenotrophomonas sp. SKA14]
 gi|219720293|gb|EED38818.1| flagellar biosynthetic protein FlhF [Stenotrophomonas sp. SKA14]
          Length = 540

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 16/201 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+ +     A   V L   DT R  A +QL  +  +      
Sbjct: 333 VIALVGPTGAGKTTTIAKLASRFAEKHAPRDVALVTTDTTRIGAREQLYGYGRQLGIAVH 392

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +  G+D   L        + K   +++IDTAG    +  L A +  +    +       
Sbjct: 393 EANSGTDLDQLLE------RLKDYKLVLIDTAGLGPRDRALAAQLQWLRAARQ------- 439

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VL A T    + +V      A   GL+++K+D T R G  + + V H +P+ ++ 
Sbjct: 440 VRTLLVLPANTSFGDMDEVVRRFGAANLQGLVLSKLDETGRFGNALSVAVDHALPITWVT 499

Query: 291 VGEGIN-DLEPFVAKDFSAVI 310
            G+ +  DL    A +    +
Sbjct: 500 DGQDVPEDLHRASAANLVLRL 520


>gi|313497814|gb|ADR59180.1| FlhF [Pseudomonas putida BIRD-1]
          Length = 435

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D+FR  A +QLK      +    
Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHA 229
             + G   AA      ++       V++IDTAG   ++  L   +  +  R +   +   
Sbjct: 278 YVDPGQSLAAALEPLLRKR------VVLIDTAGLQASDPALRMQLETLAGRGIAAKN--- 328

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L
Sbjct: 329 ----YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPVAYL 384

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 385 TDGPRIPD 392


>gi|26991033|ref|NP_746458.1| flagellar biosynthesis regulator FlhF [Pseudomonas putida KT2440]
 gi|24986064|gb|AAN69922.1|AE016631_1 flagellar biosynthetic protein FlhF [Pseudomonas putida KT2440]
          Length = 435

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D+FR  A +QLK      +    
Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHA 229
             + G   AA      ++       V++IDTAG   ++  L   +  +  R +   +   
Sbjct: 278 YVDPGQSLAAALEPLLRKR------VVLIDTAGLQASDPALRMQLETLAGRGIAAKN--- 328

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L
Sbjct: 329 ----YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPVAYL 384

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 385 TDGPRIPD 392


>gi|167034907|ref|YP_001670138.1| flagellar biosynthesis regulator FlhF [Pseudomonas putida GB-1]
 gi|166861395|gb|ABY99802.1| GTP-binding signal recognition particle SRP54 G- domain
           [Pseudomonas putida GB-1]
          Length = 435

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D+FR  A +QLK      +    
Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHA 229
             + G   AA      ++       V++IDTAG   ++  L   +  +  R +   +   
Sbjct: 278 YVDPGQSLAAALEPLLRKR------VVLIDTAGLQASDPALRMQLETLAGRGIAAKN--- 328

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L
Sbjct: 329 ----YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPVAYL 384

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 385 TDGPRIPD 392


>gi|148546763|ref|YP_001266865.1| flagellar biosynthesis regulator FlhF [Pseudomonas putida F1]
 gi|148510821|gb|ABQ77681.1| GTP-binding signal recognition particle SRP54, G- domain
           [Pseudomonas putida F1]
          Length = 435

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D+FR  A +QLK      +    
Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVT 277

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHA 229
             + G   AA      ++       V++IDTAG   ++  L   +  +  R +   +   
Sbjct: 278 YVDPGQSLAAALEPLLRKR------VVLIDTAGLQASDPALRMQLETLAGRGIAAKN--- 328

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L
Sbjct: 329 ----YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPVAYL 384

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 385 TDGPRIPD 392


>gi|288553044|ref|YP_003424979.1| flagellar biosynthesis regulator FlhF [Bacillus pseudofirmus OF4]
 gi|288544204|gb|ADC48087.1| flagellar biosynthesis regulator FlhF [Bacillus pseudofirmus OF4]
          Length = 386

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 117/281 (41%), Gaps = 25/281 (8%)

Query: 26  LKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
            +LK+ I +I  ++ L +       + +E+ L     G  V++ I  E+L     +    
Sbjct: 101 NELKKLIKEIKPAQPLSEQEYPLPFQTIENQLK----GQGVSRSIRAEMLGTLLNEWYKK 156

Query: 82  QRVLYDVSELIHKMLMPLSKPFNW----DFSHRPHVILVVGVNGVGKTTVIGKLSKKM-S 136
                D   L+++    L K  +            +I +VG  GVGKTT I K++ +   
Sbjct: 157 PEQDRDPKALLNQTAEWLKKELSILPVGGLRFEKKIINIVGPTGVGKTTTIAKIAAECVL 216

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   DT+R AA++QLK +A   +           A ++      +   K  DV
Sbjct: 217 KQQKKVALITTDTYRIAAVEQLKTYAKILNIPIEV------AYSIEDFKKAKDLYKHFDV 270

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +++D+AGR   N + +  +       K +D       L VL  T+    ++Q+    ++ 
Sbjct: 271 ILVDSAGRNFRNKLYVEELS------KVMDFTEEAETLLVLALTSKYEDMKQIIAQFSLL 324

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
               +I TK D T+  G  I + +   +   ++  G+ + D
Sbjct: 325 PIKQVIFTKQDETSSYGAYINVPLEFGLGAAYITNGQNVPD 365


>gi|330445381|ref|ZP_08309033.1| SRP54-type, GTPase domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489572|dbj|GAA03530.1| SRP54-type, GTPase domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 559

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 89/200 (44%), Gaps = 14/200 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT I KL+ +  M     ++ L   DT+R  A +QL  +         
Sbjct: 341 VVALLGPTGVGKTTTIAKLAARAAMEYGPEQIALVTTDTYRIGAHEQLATYGRIMGCPVR 400

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++   + A + ++       +   ++++DTAG    +  L   +  +++     +  A 
Sbjct: 401 VAKDAEELADILHQ------LRHRRLVLLDTAGMGQRDIRLSEQLDTLMK-----NSGAH 449

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                V+ AT+ +  L++          +G ++TK+D +   G +I + V + +P+ +L 
Sbjct: 450 IRSYLVMPATSQRRVLQETIEHFRRIPLSGCVLTKLDESLSLGEIICVAVQNALPIAYLA 509

Query: 291 VGEGIN-DLEPFVAKDFSAV 309
            G+ +  D++        + 
Sbjct: 510 DGQRVPEDIKIASGNYLVSR 529


>gi|229522027|ref|ZP_04411444.1| flagellar biosynthesis protein FlhF [Vibrio cholerae TM 11079-80]
 gi|229340952|gb|EEO05957.1| flagellar biosynthesis protein FlhF [Vibrio cholerae TM 11079-80]
          Length = 495

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 129/313 (41%), Gaps = 25/313 (7%)

Query: 3   NQKVASESL---SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           ++KV  E +   S +  + +   S    L+  ++ ++         RE L  +LI+    
Sbjct: 179 DRKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLER 235

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + V+ ++ ++L      ++    +    +  L+   +  +      D   R  V+ ++G 
Sbjct: 236 MGVSLEMADQLACY-IPEETPPPKAWKALLGLVSDQIPVV----KHDILKRGGVVALLGP 290

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++
Sbjct: 291 TGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNE 350

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A + Y+       +   ++++DTAG    +  L   +  +++     +         VL
Sbjct: 351 LADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGETIHSYLVL 399

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  
Sbjct: 400 PATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPE 459

Query: 297 DLEPFVAKDFSAV 309
           D+     K   A 
Sbjct: 460 DIVIAQPKYMVAK 472


>gi|229524076|ref|ZP_04413481.1| flagellar biosynthesis protein FlhF [Vibrio cholerae bv. albensis
           VL426]
 gi|229337657|gb|EEO02674.1| flagellar biosynthesis protein FlhF [Vibrio cholerae bv. albensis
           VL426]
          Length = 495

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 129/313 (41%), Gaps = 25/313 (7%)

Query: 3   NQKVASESL---SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           ++KV  E +   S +  + +   S    L+  ++ ++         RE L  +LI+    
Sbjct: 179 DRKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLER 235

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + V+ ++ ++L      ++    +    +  L+   +  +      D   R  V+ ++G 
Sbjct: 236 MGVSLEMADQLACY-IPEETPPPKAWKALLGLVSDQIPVV----KHDILKRGGVVALLGP 290

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++
Sbjct: 291 TGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNE 350

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A + Y+       +   ++++DTAG    +  L   +  +++     +         VL
Sbjct: 351 LADVIYQ------LRNRRLILVDTAGMGQRDVRLPEQLDTLMQ-----ESGETIHSYLVL 399

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  
Sbjct: 400 PATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPE 459

Query: 297 DLEPFVAKDFSAV 309
           D+     K   A 
Sbjct: 460 DIVIAQPKYMVAK 472


>gi|37680650|ref|NP_935259.1| flagellar biosynthesis regulator FlhF [Vibrio vulnificus YJ016]
 gi|161501816|ref|NP_760823.2| flagellar biosynthesis regulator FlhF [Vibrio vulnificus CMCP6]
 gi|37199398|dbj|BAC95230.1| flagellar biosynthesis protein FlhF [Vibrio vulnificus YJ016]
 gi|319999286|gb|AAO10350.2| Flagellar biosynthesis protein flhF [Vibrio vulnificus CMCP6]
          Length = 497

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 123/319 (38%), Gaps = 38/319 (11%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             Q    E  + +  + +   S    L+  ++ ++         RE L  +LI       
Sbjct: 183 KPQTEQEEGSNELENMREEMTSIRRLLEHQVSGLLWQEV---ERREPLRAMLI------- 232

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELI-----HKMLMPLSKPFNW---DFSHRPHV 113
                 + L     + +++ Q   Y   +         +L  +S   N    D   R  V
Sbjct: 233 ------KRLERMGVSPELADQMACYIPEDTKPARAWKALLALVSDQINVTKQDILKRGGV 286

Query: 114 ILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           + ++G  GVGKTT I KL+ +  M      V L   DT+R  A +QL I+          
Sbjct: 287 VALLGPTGVGKTTTIAKLAARAAMEYGANNVALVTTDTYRIGAHEQLSIYGRIMGCPVKV 346

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           ++  S+ A + Y+       +   ++++DTAG    +  L   +  +++     +     
Sbjct: 347 AKDSSELADVIYQ------LRNRKLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEVI 395

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
               VL AT  +  L++          +G I+TK+D +   G  + +V+ + +PV ++  
Sbjct: 396 HSYLVLPATAQRRVLQETIDHFRRIPLSGCILTKLDESLSLGEFVSVVIQNALPVAYIAN 455

Query: 292 GEGIN-DLEPFVAKDFSAV 309
           G+ +  D+     K   A 
Sbjct: 456 GQRVPEDIVIAQPKYLIAK 474


>gi|330808233|ref|YP_004352695.1| flagellar biosynthesis regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376341|gb|AEA67691.1| flagellar biosynthesis regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 449

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 21/232 (9%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +LL      +   Q     ++ L   +  P  +P          VI +VG  G+GKTT +
Sbjct: 192 DLLALINGIEEPRQAWRMLLAHLARMIATPEVEPLEEGG-----VIAMVGPAGMGKTTTL 246

Query: 129 GKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            KL+ +         + L + D+FR  A +QLK      +      + G   A    +A 
Sbjct: 247 AKLAARYVLKYGAQSIALVSMDSFRIGAQEQLKTLGRILNVSVTHVDPGQSLA----QAL 302

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQNA 245
           +    K+  V++IDTAG   ++  L   +  +  R +K  +         VL  T+ +  
Sbjct: 303 EPLLRKR--VVLIDTAGLQASDPALRMQLESLAGRGIKSKN-------YLVLATTSQKQV 353

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           L      +   G  G I+TK+D TA  G ++ + + H++PV +L  G  I D
Sbjct: 354 LTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAIGHELPVAYLTDGPRIPD 405


>gi|15642068|ref|NP_231700.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586913|ref|ZP_01676693.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           2740-80]
 gi|121727367|ref|ZP_01680506.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae V52]
 gi|147673602|ref|YP_001217595.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae O395]
 gi|153818371|ref|ZP_01971038.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae NCTC
           8457]
 gi|153821677|ref|ZP_01974344.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae B33]
 gi|227082195|ref|YP_002810746.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae
           M66-2]
 gi|229507842|ref|ZP_04397347.1| flagellar biosynthesis protein FlhF [Vibrio cholerae BX 330286]
 gi|229511922|ref|ZP_04401401.1| flagellar biosynthesis protein FlhF [Vibrio cholerae B33]
 gi|229519058|ref|ZP_04408501.1| flagellar biosynthesis protein FlhF [Vibrio cholerae RC9]
 gi|229607387|ref|YP_002878035.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae MJ-1236]
 gi|254849155|ref|ZP_05238505.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae MO10]
 gi|255745187|ref|ZP_05419136.1| flagellar biosynthesis protein FlhF [Vibrio cholera CIRS 101]
 gi|262155954|ref|ZP_06029075.1| flagellar biosynthesis protein FlhF [Vibrio cholerae INDRE 91/1]
 gi|262167688|ref|ZP_06035391.1| flagellar biosynthesis protein FlhF [Vibrio cholerae RC27]
 gi|298497904|ref|ZP_07007711.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656614|gb|AAF95214.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121548849|gb|EAX58892.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           2740-80]
 gi|121630259|gb|EAX62657.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae V52]
 gi|126511061|gb|EAZ73655.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae NCTC
           8457]
 gi|126520775|gb|EAZ77998.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae B33]
 gi|146315485|gb|ABQ20024.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae O395]
 gi|227010083|gb|ACP06295.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae
           M66-2]
 gi|227013965|gb|ACP10175.1| putative flagellar biosynthetic protein FlhF [Vibrio cholerae O395]
 gi|229343747|gb|EEO08722.1| flagellar biosynthesis protein FlhF [Vibrio cholerae RC9]
 gi|229351887|gb|EEO16828.1| flagellar biosynthesis protein FlhF [Vibrio cholerae B33]
 gi|229355347|gb|EEO20268.1| flagellar biosynthesis protein FlhF [Vibrio cholerae BX 330286]
 gi|229370042|gb|ACQ60465.1| flagellar biosynthesis protein FlhF [Vibrio cholerae MJ-1236]
 gi|254844860|gb|EET23274.1| flagellar biosynthesis regulator FlhF [Vibrio cholerae MO10]
 gi|255737017|gb|EET92413.1| flagellar biosynthesis protein FlhF [Vibrio cholera CIRS 101]
 gi|262023893|gb|EEY42591.1| flagellar biosynthesis protein FlhF [Vibrio cholerae RC27]
 gi|262030265|gb|EEY48908.1| flagellar biosynthesis protein FlhF [Vibrio cholerae INDRE 91/1]
 gi|297542237|gb|EFH78287.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 495

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 129/313 (41%), Gaps = 25/313 (7%)

Query: 3   NQKVASESL---SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           ++KV  E +   S +  + +   S    L+  ++ ++         RE L  +LI+    
Sbjct: 179 DRKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLER 235

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + V+ ++ ++L      ++    +    +  L+   +  +      D   R  V+ ++G 
Sbjct: 236 MGVSLEMADQLACY-IPEETPPPKAWKALLGLVSDQIPVV----KHDILKRGGVVALLGP 290

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++
Sbjct: 291 TGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNE 350

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A + Y+       +   ++++DTAG    +  L   +  +++     +         VL
Sbjct: 351 LADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGETIHSYLVL 399

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  
Sbjct: 400 PATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPE 459

Query: 297 DLEPFVAKDFSAV 309
           D+     K   A 
Sbjct: 460 DIVIAQPKYMVAK 472


>gi|229918647|ref|YP_002887293.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Exiguobacterium sp. AT1b]
 gi|229470076|gb|ACQ71848.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Exiguobacterium sp. AT1b]
          Length = 353

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 99/255 (38%), Gaps = 25/255 (9%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVS------ELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           VE LL+     D S +  L ++       E   + +    K    +       ++VVG  
Sbjct: 101 VESLLSTESFADESWEETLNELYYTTKSVEEAERFVYEQVKSTFIEPPEAKRYVMVVGPT 160

Query: 121 GVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           GVGKTT + KL+       G  V L   DT+R AAI+QLK +A+  S     +    D  
Sbjct: 161 GVGKTTTLAKLAAHFKLTEGKTVGLITTDTYRIAAIEQLKTYAEIMSIPVEVAYDFHD-- 218

Query: 180 ALAYEAFKQAQAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 FK+A+      D+++IDTAGR   +   +    +     +              
Sbjct: 219 ------FKRAKQLFARKDIVLIDTAGRNFRDPAYVEQFHEHHDFTETSLSLVLSL----- 267

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-N 296
             T+    +  +         + LI TK D T+    +  +V    +PV ++  G+ + +
Sbjct: 268 --TSKMKDMDMIYSQFESLPLSSLIFTKADETSDIHAMYRMVKKSGLPVAWMTDGQEVPD 325

Query: 297 DLEPFVAKDFSAVIT 311
           DL    A   +  + 
Sbjct: 326 DLIRGHADALTKRLF 340


>gi|237799253|ref|ZP_04587714.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022108|gb|EGI02165.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 443

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 17/190 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D+FR  A +QLK      +    
Sbjct: 225 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 284

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHA 229
             + G        +A +    K+  V++IDTAG   ++  L   +  +  R +K  +   
Sbjct: 285 HVDPGQSLV----QALEPLLRKR--VVLIDTAGLQASDPALRMQLESLAGRGIKSRN--- 335

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L
Sbjct: 336 ----YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYL 391

Query: 290 GVGEGIN-DL 298
             G  I  DL
Sbjct: 392 TDGPRIPEDL 401


>gi|153826085|ref|ZP_01978752.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           MZO-2]
 gi|149740202|gb|EDM54355.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           MZO-2]
          Length = 495

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 129/313 (41%), Gaps = 25/313 (7%)

Query: 3   NQKVASESL---SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           ++KV  E +   S +  + +   S    L+  ++ ++         RE L  +LI+    
Sbjct: 179 DRKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLER 235

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + V+ ++ ++L      ++    +    +  L+   +  +      D   R  V+ ++G 
Sbjct: 236 MGVSLEMADQLACY-IPEETPPPKAWKALLGLVSDQIPVV----KHDILKRGGVVALLGP 290

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++
Sbjct: 291 TGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNE 350

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A + Y+       +   ++++DTAG    +  L   +  +++     +         VL
Sbjct: 351 LADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGETIHSYLVL 399

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  
Sbjct: 400 PATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPE 459

Query: 297 DLEPFVAKDFSAV 309
           D+     K   A 
Sbjct: 460 DIVIAQPKYMVAK 472


>gi|229513724|ref|ZP_04403186.1| flagellar biosynthesis protein FlhF [Vibrio cholerae TMA 21]
 gi|229348905|gb|EEO13862.1| flagellar biosynthesis protein FlhF [Vibrio cholerae TMA 21]
          Length = 495

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 129/313 (41%), Gaps = 25/313 (7%)

Query: 3   NQKVASESL---SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           ++KV  E +   S +  + +   S    L+  ++ ++         RE L  +LI+    
Sbjct: 179 DRKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLER 235

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + V+ ++ ++L      ++    +    +  L+   +  +      D   R  V+ ++G 
Sbjct: 236 MGVSLEMADQLACY-IPEETPPPKAWKALLGLVSDQIPVV----KHDILKRGGVVALLGP 290

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++
Sbjct: 291 TGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNE 350

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A + Y+       +   ++++DTAG    +  L   +  +++     +         VL
Sbjct: 351 LADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGETIHSYLVL 399

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  
Sbjct: 400 PATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPE 459

Query: 297 DLEPFVAKDFSAV 309
           D+     K   A 
Sbjct: 460 DIVIAQPKYMVAK 472


>gi|229528914|ref|ZP_04418304.1| flagellar biosynthesis protein FlhF [Vibrio cholerae 12129(1)]
 gi|229332688|gb|EEN98174.1| flagellar biosynthesis protein FlhF [Vibrio cholerae 12129(1)]
 gi|327484602|gb|AEA79009.1| Flagellar biosynthesis protein FlhF [Vibrio cholerae LMA3894-4]
          Length = 495

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 129/313 (41%), Gaps = 25/313 (7%)

Query: 3   NQKVASESL---SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           ++KV  E +   S +  + +   S    L+  ++ ++         RE L  +LI+    
Sbjct: 179 DRKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLER 235

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + V+ ++ ++L      ++    +    +  L+   +  +      D   R  V+ ++G 
Sbjct: 236 MGVSLEMADQLACY-IPEETPPPKAWKALLGLVSDQIPVV----KHDILKRGGVVALLGP 290

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++
Sbjct: 291 TGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNE 350

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A + Y+       +   ++++DTAG    +  L   +  +++     +         VL
Sbjct: 351 LADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGETIHSYLVL 399

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  
Sbjct: 400 PATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPE 459

Query: 297 DLEPFVAKDFSAV 309
           D+     K   A 
Sbjct: 460 DIVIAQPKYMVAK 472


>gi|320155679|ref|YP_004188058.1| flagellar biosynthesis protein FlhF [Vibrio vulnificus MO6-24/O]
 gi|319930991|gb|ADV85855.1| flagellar biosynthesis protein FlhF [Vibrio vulnificus MO6-24/O]
          Length = 497

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 123/319 (38%), Gaps = 38/319 (11%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             Q    E  + +  + +   S    L+  ++ ++         RE L  +LI       
Sbjct: 183 KPQTEQEEGSNELENMREEMTSIRRLLEHQVSGLLWQEV---ERREPLRAMLI------- 232

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELI-----HKMLMPLSKPFNW---DFSHRPHV 113
                 + L     + +++ Q   Y   +         +L  +S   N    D   R  V
Sbjct: 233 ------KRLERMGVSPELADQMACYIPEDTKPARAWKALLALVSDQINVTKQDILKRGGV 286

Query: 114 ILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           + ++G  GVGKTT I KL+ +  M      V L   DT+R  A +QL I+          
Sbjct: 287 VALLGPTGVGKTTTIAKLAARAAMEYGANNVALVTTDTYRIGAHEQLSIYGRIMGCPVKV 346

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           ++  S+ A + Y+       +   ++++DTAG    +  L   +  +++     +     
Sbjct: 347 AKDSSELADVIYQ------LRNRKLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEVI 395

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
               VL AT  +  L++          +G I+TK+D +   G  + +V+ + +PV ++  
Sbjct: 396 HSYLVLPATAQRRVLQETIDHFRRIPLSGCILTKLDESLSLGEFVSVVIQNALPVAYIAN 455

Query: 292 GEGIN-DLEPFVAKDFSAV 309
           G+ +  D+     K   A 
Sbjct: 456 GQRVPEDIVIAQPKYLIAK 474


>gi|312962256|ref|ZP_07776748.1| flagellar biosynthesis protein FlhF [Pseudomonas fluorescens WH6]
 gi|311283593|gb|EFQ62182.1| flagellar biosynthesis protein FlhF [Pseudomonas fluorescens WH6]
          Length = 438

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 16/209 (7%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDT 149
           +   L  +      +      VI +VG  G+GKTT + KL+ +         + L + D+
Sbjct: 199 LLAHLARMIATPEIEPREEGGVIAMVGPAGMGKTTTLAKLAARYVLKYGAHNIALVSMDS 258

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R  A +QLK      +      + G   A       ++       V++IDTAG   ++ 
Sbjct: 259 YRIGAQEQLKTLGRILNVPVTHVDPGQSLANALDPLLRKR------VVLIDTAGLQASDP 312

Query: 210 ILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
            L   +  +  R +K  +         VL  T+ +  L      +   G  G I+TK+D 
Sbjct: 313 ALRLQLESLAGRGIKSKN-------YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDE 365

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           TA  G ++ + ++H++PV +L  G  I D
Sbjct: 366 TASLGEVLSLAISHELPVAYLTDGPRIPD 394


>gi|167920928|ref|ZP_02508019.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           BCC215]
          Length = 583

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 259 LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGH 315

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 316 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 373

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 374 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 427

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 428 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 481

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 482 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 531


>gi|83749401|ref|ZP_00946395.1| Probable flagellar biosynthesis protein (flhF) [Ralstonia
           solanacearum UW551]
 gi|207738853|ref|YP_002257246.1| flagellar biosynthetic protein flhf [Ralstonia solanacearum
           IPO1609]
 gi|83723928|gb|EAP71112.1| Probable flagellar biosynthesis protein (flhF) [Ralstonia
           solanacearum UW551]
 gi|206592223|emb|CAQ59129.1| flagellar biosynthetic protein flhf [Ralstonia solanacearum
           IPO1609]
          Length = 610

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 121/292 (41%), Gaps = 22/292 (7%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E+ +  R++          L + ++ + S   +L D VR  L   ++ +     + + ++
Sbjct: 286 ETAAMTRRMVGEIEVLKSTLTDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQLTRYVL 345

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + +      +  +    L  V   + K L  +  P       +  V  ++G  GVGKTT 
Sbjct: 346 DNM-----PQHGTYDSALDFVQRALEKNLTVV--PDENSLLDQGGVFALMGPTGVGKTTT 398

Query: 128 IGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
             KL+ +  +     +V L + D++R    +QL+I+           +   D       +
Sbjct: 399 TAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILGVTVHAVKDAQDL------S 452

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                 ++  V++IDT G    +  +   +  +  V   +        L +L++T+    
Sbjct: 453 LALGDLREKHVVLIDTIGMSQRDRAVSEQMAMLHAVGPSI------KRLLLLNSTSNGKT 506

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           L +V   +  A   G I+TK+D  A  G  + +++ +++P++++  G+ + +
Sbjct: 507 LDEVVSAYRDANLAGCILTKIDEAASVGHAMDVMIRNRLPLHYVSYGQRVPE 558


>gi|91785645|ref|YP_560851.1| flagellar biosynthesis regulator FlhF [Burkholderia xenovorans
           LB400]
 gi|91689599|gb|ABE32799.1| flagellar biosynthesis protein, flhF [Burkholderia xenovorans
           LB400]
          Length = 657

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 114/284 (40%), Gaps = 25/284 (8%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            +S    ++E    ++   R+  +  R  L   L  +     + Q +V+ L     + + 
Sbjct: 340 LSSMRGMMEEHFAGLLWGERQRRNPARAALTKHLFAAGFSAQLVQMVVDNLPDDVESMEG 399

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137
            +      V  ++   L  +          R  V  ++G  GVGKTT   KL+ +  M  
Sbjct: 400 GMDW----VRSVLESNLPVMEDE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMRF 453

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV L   D++R    +QL+I+           + G      A      ++ +   ++
Sbjct: 454 GASKVALLTTDSYRIGGHEQLRIFGKILGVSVHAVKDG------ADLQLALSELRNKHIV 507

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDT G    + ++   I  +           P   L +L+AT+  + L +V   +  A 
Sbjct: 508 LIDTIGMSQRDRLVSDQIAMLCHA------GQPVQRLLLLNATSHGDTLNEVVQAYQRAP 561

Query: 258 ----TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                 G I+TK+D     GG++  V+ +K+PV+++  G+ + +
Sbjct: 562 DQQPLAGCILTKLDEATNLGGVLDTVIRYKLPVHYVSTGQKVPE 605


>gi|22596847|gb|AAN03365.1|AF481091_2 FlhF [Pseudomonas fluorescens]
          Length = 438

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 21/223 (9%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-- 135
           +   Q     ++ L   +  P  +P          VI +VG  G+GKTT + KL+ +   
Sbjct: 190 EEPRQAWRMLLAHLARMIATPEIEPLEEGG-----VIAMVGPAGMGKTTTLAKLAARYVL 244

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                 + L + D++R  A +QLK      +      + G   A       ++       
Sbjct: 245 KYGAQNIALVSMDSYRIGAQEQLKTLGRILNVTVTHVDPGQSLANALDPLLRKR------ 298

Query: 196 VLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           V++IDTAG   ++  L   +  +  R +K  +         VL  T+ +  L      + 
Sbjct: 299 VVLIDTAGLQASDPALRMQLESLAGRGIKSKN-------YLVLATTSQKQVLTAAYHSYK 351

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             G  G I+TK+D TA  G ++ + ++H++PV +L  G  I D
Sbjct: 352 RCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPD 394


>gi|296157467|ref|ZP_06840302.1| flagellar biosynthetic protein FlhF [Burkholderia sp. Ch1-1]
 gi|295892239|gb|EFG72022.1| flagellar biosynthetic protein FlhF [Burkholderia sp. Ch1-1]
          Length = 650

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 114/284 (40%), Gaps = 25/284 (8%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            +S    ++E    ++   R+  +  R  L   L  +     + Q +V+ L     + + 
Sbjct: 333 LSSMRGMMEEHFAGLLWGERQRRNPARAALTKHLFAAGFSAQLVQMMVDNLPDDVESMEG 392

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137
            +      V  ++   L  +          R  V  ++G  GVGKTT   KL+ +  M  
Sbjct: 393 GMDW----VRSVLESNLPVMEDE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMRF 446

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV L   D++R    +QL+I+           + G      A      ++ +   ++
Sbjct: 447 GASKVALLTTDSYRIGGHEQLRIFGKILGVSVHAVKDG------ADLQLALSELRNKHIV 500

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDT G    + ++   I  +           P   L +L+AT+  + L +V   +  A 
Sbjct: 501 LIDTIGMSQRDRLVSDQIAMLCHA------GQPVQRLLLLNATSHGDTLNEVVQAYQRAP 554

Query: 258 ----TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                 G I+TK+D     GG++  V+ +K+PV+++  G+ + +
Sbjct: 555 DQQPLAGCILTKLDEATNLGGVLDTVIRYKLPVHYVSTGQKVPE 598


>gi|153213697|ref|ZP_01948949.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           1587]
 gi|254286812|ref|ZP_04961765.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           AM-19226]
 gi|262189765|ref|ZP_06048117.1| flagellar biosynthesis protein FlhF [Vibrio cholerae CT 5369-93]
 gi|297579574|ref|ZP_06941502.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|124115758|gb|EAY34578.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           1587]
 gi|150423103|gb|EDN15051.1| flagellar biosynthetic protein FlhF, putative [Vibrio cholerae
           AM-19226]
 gi|262034352|gb|EEY52740.1| flagellar biosynthesis protein FlhF [Vibrio cholerae CT 5369-93]
 gi|297537168|gb|EFH76001.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 495

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 129/313 (41%), Gaps = 25/313 (7%)

Query: 3   NQKVASESL---SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           ++KV  E +   S +  + +   S    L+  ++ ++         RE L  +LI+    
Sbjct: 179 DRKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLER 235

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + V+ ++ ++L      ++    +    +  L+   +  +      D   R  V+ ++G 
Sbjct: 236 MGVSLEMADQLACY-IPEETPPPKAWKALLGLVSDQIPVV----KHDILKRGGVVALLGP 290

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++
Sbjct: 291 TGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNE 350

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A + Y+       +   ++++DTAG    +  L   +  +++     +         VL
Sbjct: 351 LADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGETIHSYLVL 399

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  
Sbjct: 400 PATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPE 459

Query: 297 DLEPFVAKDFSAV 309
           D+     K   A 
Sbjct: 460 DIVIAQPKYMVAK 472


>gi|84388126|ref|ZP_00991022.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
 gi|84377193|gb|EAP94063.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
          Length = 521

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 115/267 (43%), Gaps = 19/267 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + V+ ++ +++      +D    R    +  L+   +    K    
Sbjct: 248 REPLRAMLIKRLERMGVSAELADQMACY-IPEDTKPARAWKALLALVADQISVTQK---- 302

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  ++ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 303 DILKRGGIVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 362

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++  S+ A + Y+       +   ++++DTAG    +  L   +  +++   
Sbjct: 363 IMGCPVRVAKDSSELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ--- 413

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             +  +  +   VL AT  +  L++          +G I+TK+D +   G  I +V+ + 
Sbjct: 414 --ESGSVINSYLVLPATAQRKVLQETIEHFRRIPLSGCILTKLDESLSLGEFISVVIQNA 471

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +PV ++  G+ +  D+     K   A 
Sbjct: 472 LPVAYIANGQRVPEDIVIAQPKYMIAK 498


>gi|239817111|ref|YP_002946021.1| flagellar biosynthesis regulator FlhF [Variovorax paradoxus S110]
 gi|239803688|gb|ACS20755.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Variovorax paradoxus S110]
          Length = 784

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 116/283 (40%), Gaps = 25/283 (8%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E +  +  + ++  D +R  L   L+ +     +++ ++E L T       
Sbjct: 106 LHSMRCMIEEQLAGVAWNEKQRRDPMRGRLLRTLLGAGFSARLSKAMLEHLPT-----GQ 160

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137
           S  + +  V   + + L               + ++  G  GVGKTT   KL+ +  M  
Sbjct: 161 SYAQGMAFVRSELIRTLPVHEDEDALLAQGGVYALM--GPTGVGKTTTTAKLAARCVMRF 218

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              K+ L   D++R  A +QL+I+    +      +  +D   +  +       +   ++
Sbjct: 219 GADKLALVTTDSYRIGAYEQLRIYGQILNVPVYAVKDATDLHLVLQD------LQGKHMV 272

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-- 255
           +IDT G    +  +   I  +       +   P   L +L+AT+  + L +V   +    
Sbjct: 273 LIDTVGMSQRDRAVSDQIAML------CNSQRPVKRLLLLNATSHGDTLNEVVHAYRHGS 326

Query: 256 -AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            +   G I TK+D     G LI  V+ H++PV+++  G+ + +
Sbjct: 327 GSDLAGCIFTKVDEATHPGALIDTVIRHRLPVHYVSSGQKVPE 369


>gi|323527724|ref|YP_004229877.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1001]
 gi|323384726|gb|ADX56817.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1001]
          Length = 731

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 113/293 (38%), Gaps = 25/293 (8%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            +S    ++E    ++   R+  +     L   L  +     + Q +V+ L       D 
Sbjct: 414 LSSLRGMMEEQFAGLMWGDRQRRNPAHGALTKHLFAAGFSAQLVQMMVDNLPEDVDNMDD 473

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137
            +      V  ++   L  +          R  V  ++G  GVGKTT   KL+ +  M  
Sbjct: 474 GMDW----VRSVLASNLPVMEDEDTL--MERGGVFALMGPTGVGKTTTTAKLAARCVMRF 527

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV L   D++R    +QL+I+           +        A      ++ +   ++
Sbjct: 528 GASKVALLTTDSYRIGGHEQLRIFGKILGVSVHAVKDS------ADLQLALSELRNKHIV 581

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-- 255
           +IDT G    + ++   I  + R         P   L +L+AT+  + L +V   +    
Sbjct: 582 LIDTIGMSQRDRLVSDQIAMLSRA------GQPVQRLLLLNATSHGDTLNEVVQAYQRGP 635

Query: 256 --AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                 G I+TK+D     GG++  V+ +K+PV+++  G+ + +      K F
Sbjct: 636 DQQPLAGCILTKLDEATNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKRF 688


>gi|171320643|ref|ZP_02909662.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia ambifaria MEX-5]
 gi|171094129|gb|EDT39217.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia ambifaria MEX-5]
          Length = 379

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 105/260 (40%), Gaps = 27/260 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L +   A+  + ++       ++   L  L         
Sbjct: 84  LTKHLFSAGFSAQLVRMMVDNLPSGDGAQ--TFEQAAEWAQSVLAANLPVLENE--DALM 139

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 140 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 199

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D           ++ +   +++IDT G    +  L   I  +        
Sbjct: 200 VPVHAVKDAGDLE------LALSELRNKHIVLIDTIGMSQRDRALSDQIAMLH------G 247

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVA---------GTTGLIMTKMDGTARGGGLIP 277
            +AP   L +L+AT+  + L +V   +  A            G I+TK+D     GG++ 
Sbjct: 248 ANAPVQRLLLLNATSHGDTLNEVVQAYRSAAEYPRAATPDLAGCILTKLDEATHLGGVLD 307

Query: 278 IVVTHKIPVYFLGVGEGIND 297
            V+ +K+P++++  G+ + +
Sbjct: 308 TVIRYKLPIHYVSTGQKVPE 327


>gi|309778950|ref|ZP_07673720.1| flagellar biosynthesis protein FlhF [Ralstonia sp. 5_7_47FAA]
 gi|308922297|gb|EFP67924.1| flagellar biosynthesis protein FlhF [Ralstonia sp. 5_7_47FAA]
          Length = 639

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 124/298 (41%), Gaps = 22/298 (7%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVA 61
            + + +E+    R++     +    L + ++ + S   +L D VR  L   ++ +     
Sbjct: 305 KESIRAETDVMTRRMVGEIETLKSTLNDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQ 364

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           + + ++E +      +  + +  L  V   I K L  +S         +  V  ++G  G
Sbjct: 365 LTRYVLENM-----PQHDTYEGALDFVQRAIEKNLSTVSDEN--SLLDQGGVFALMGPTG 417

Query: 122 VGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           VGKTT   KL+ +  +     +V L + D++R    +QL+I+           +   D +
Sbjct: 418 VGKTTTTAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILGVSVHAVKDAQDLS 477

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
                A    + K   V++IDT G    +  +   +  +  V   +        L +L+A
Sbjct: 478 L----ALNDLREKH--VVLIDTIGMSQRDRAVSEQMAMLHAVGPSI------KRLLLLNA 525

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            +    L +V   +  A   G I+TK+D  A  G  + +++  ++P++++  G+ + +
Sbjct: 526 ASNGKTLDEVVGAYRDANLAGCILTKIDEAASVGHAMDVMIRRRLPLHYVSYGQRVPE 583


>gi|194365641|ref|YP_002028251.1| flagellar biosynthesis regulator FlhF [Stenotrophomonas maltophilia
           R551-3]
 gi|194348445|gb|ACF51568.1| GTP-binding signal recognition particle SRP54 G- domain
           [Stenotrophomonas maltophilia R551-3]
          Length = 542

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 16/201 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+ +     A   V L   DT R  A +QL  +  +      
Sbjct: 335 VIALVGPTGAGKTTTIAKLASRFAEKHAPRDVALVTTDTTRIGAREQLYGYGRQLGIAVH 394

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +  G+D   L        + K   +++IDTAG    +  L A +  +    +       
Sbjct: 395 EANSGTDLDQLLE------RLKDYKLVLIDTAGLGPRDRALAAQLQWLRAARQ------- 441

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VL A T    + +V      A   GL+++K+D T R G  + + V H +P+ ++ 
Sbjct: 442 VRTLLVLPANTSFGDMDEVVRRFGAANLQGLVLSKLDETGRFGNALSVAVDHALPITWVT 501

Query: 291 VGEGIN-DLEPFVAKDFSAVI 310
            G+ +  DL    A +    +
Sbjct: 502 DGQDVPEDLHRASAANLVLRL 522


>gi|300697967|ref|YP_003748628.1| flagellar biosynthetic protein flhF [Ralstonia solanacearum
           CFBP2957]
 gi|299074691|emb|CBJ54248.1| putative flagellar biosynthetic protein flhF [Ralstonia
           solanacearum CFBP2957]
          Length = 610

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 121/292 (41%), Gaps = 22/292 (7%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E+ +  R++          L + ++ + S   +L D VR  L   ++ +     + + ++
Sbjct: 286 ETAAMTRRMVGEIEVLKSTLTDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQLTRYVL 345

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + +         + +  L  V   + K L  +  P       +  V  ++G  GVGKTT 
Sbjct: 346 DNMPQHG-----TYESALDFVQRALEKNLTVV--PDENSLLDQGGVFALMGPTGVGKTTT 398

Query: 128 IGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
             KL+ +  +     +V L + D++R    +QL+I+           +   D       +
Sbjct: 399 TAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILGVTVHAVKDAQDL------S 452

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                 ++  V++IDT G    +  +   +  +  V   +        L +L++T+    
Sbjct: 453 LALGDLREKHVVLIDTIGMSQRDRAVSEQMAMLHAVGPSI------KRLLLLNSTSNGKT 506

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           L +V   +  A   G I+TK+D  A  G  + +++ +++P++++  G+ + +
Sbjct: 507 LDEVVSAYRDANLAGCILTKIDEAASVGHAMDVMIRNRLPLHYVSYGQRVPE 558


>gi|299069776|emb|CBJ41055.1| putative flagellar biosynthetic protein flhF [Ralstonia
           solanacearum CMR15]
          Length = 615

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 119/292 (40%), Gaps = 22/292 (7%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           E+ +  R++          L + ++ + S   +L D VR  L   ++ +     + + ++
Sbjct: 291 ETDAMTRRMVGEIEVLKSTLTDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQLTRYVL 350

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + +         +    L  V   + K L  +  P       +  V  ++G  GVGKTT 
Sbjct: 351 DNMPQHG-----TYDSALDFVQRALEKNLTVV--PNENSLLDQGGVFALMGPTGVGKTTT 403

Query: 128 IGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
             KL+ +  +     +V L + D++R    +QL+I+           +   D       +
Sbjct: 404 TAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILGVSVHAVKDAQDL------S 457

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                 ++  V++IDT G    +  +   +  +  V   +        L +L+AT+    
Sbjct: 458 LALGDLREKHVVLIDTIGMSQRDRAVSEQMAMLHAVGPSI------KRLLLLNATSNGKT 511

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           L +V   +  A   G I+TK+D  A  G  +  ++ H++P++++  G+ + +
Sbjct: 512 LDEVVSAYRDANLAGCILTKIDEAASVGHAMDAMIRHRLPLHYVSYGQRVPE 563


>gi|149188100|ref|ZP_01866395.1| flagellar biosynthesis regulator FlhF [Vibrio shilonii AK1]
 gi|148838088|gb|EDL55030.1| flagellar biosynthesis regulator FlhF [Vibrio shilonii AK1]
          Length = 506

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/267 (22%), Positives = 116/267 (43%), Gaps = 19/267 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + ++ ++ ++L      +D   Q+    +  L+   ++ +SK    
Sbjct: 233 REPLRAMLIKRLERMGLSPELSDQLACY-IPEDTPPQKAWKALLSLVSDQIV-VSKQ--- 287

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   +  ++ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 288 DILRKGGIVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 347

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++   + A + Y+       +   +++IDTAG    +  L   +  +++   
Sbjct: 348 IMGCPVRVAKDSEELADVLYQ------LRNRRLVLIDTAGMGQRDVRLSEQLDTLMQ--- 398

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             +         VL AT  +  L++          +G IMTK+D +   G  I +VV + 
Sbjct: 399 --ESGEVIHSYLVLPATAQRQVLQETLDHFRRIPLSGCIMTKLDESLSLGEFISVVVQNA 456

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +PV ++  G+ +  D+     K   A 
Sbjct: 457 LPVTYIANGQRVPEDIVIAQPKYMVAK 483


>gi|86146121|ref|ZP_01064447.1| flagellar biosynthesis protein [Vibrio sp. MED222]
 gi|85836068|gb|EAQ54200.1| flagellar biosynthesis protein [Vibrio sp. MED222]
          Length = 493

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 115/267 (43%), Gaps = 19/267 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + V+ ++ +++      +D    R    +  L+   +    K    
Sbjct: 220 REPLRAMLIKRLERMGVSAELADQMACY-IPEDTKPARAWKALLALVADQISVTQK---- 274

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  ++ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 275 DILKRGGIVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 334

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++  S+ A + Y+       +   ++++DTAG    +  L   +  +++   
Sbjct: 335 IMGCPVRVAKDSSELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ--- 385

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             +  +  +   VL AT  +  L++          +G I+TK+D +   G  I +V+ + 
Sbjct: 386 --ESGSVINSYLVLPATAQRKVLQETIEHFRRIPLSGCILTKLDESLSLGEFISVVIQNA 443

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +PV ++  G+ +  D+     K   A 
Sbjct: 444 LPVAYIANGQRVPEDIVIAQPKYMIAK 470


>gi|238759638|ref|ZP_04620799.1| Cell division protein ftsY [Yersinia aldovae ATCC 35236]
 gi|238702181|gb|EEP94737.1| Cell division protein ftsY [Yersinia aldovae ATCC 35236]
          Length = 120

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/120 (48%), Positives = 81/120 (67%)

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           +L+ DTAGRL N + LM  + K++RV+K+LD  APH V+  LDA+TGQNA+ Q ++F+  
Sbjct: 1   MLLADTAGRLQNKAHLMEELKKIVRVMKKLDGDAPHEVMLTLDASTGQNAVSQAKLFNEA 60

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            G TG+ +TK+DGTA+GG +  I     IP+ ++GVGEGI DL PF A DF   +    D
Sbjct: 61  VGLTGITLTKLDGTAKGGVIFAIANQFGIPIRYIGVGEGIEDLRPFKADDFIEALFARED 120


>gi|77457788|ref|YP_347293.1| flagellar biosynthesis regulator FlhF [Pseudomonas fluorescens
           Pf0-1]
 gi|77381791|gb|ABA73304.1| putative flagellar biosynthesis protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 446

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 21/223 (9%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-- 135
           D   Q     ++ L   + +P  +P          VI +VG  G+GKTT + KL+ +   
Sbjct: 198 DEPRQAWRMLLAHLARMIAVPEVEPLEEGG-----VIAMVGPAGMGKTTTLAKLAARYVL 252

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                 + L + D+FR  A +QLK      +      + G           ++       
Sbjct: 253 KYGAQNIALVSMDSFRIGAQEQLKTLGRILNVSVTHVDPGQSLVQALDPLLRKR------ 306

Query: 196 VLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           V++IDTAG   ++  L   +  +  R ++  +         VL  T+ +  L      + 
Sbjct: 307 VVLIDTAGLQASDPALRMQLESLAGRGIRSKN-------YLVLATTSQKQVLTAAYHSYK 359

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             G  G I+TK+D TA  G ++ + ++H++PV +L  G  I D
Sbjct: 360 RCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPD 402


>gi|172057868|ref|YP_001814328.1| GTP-binding signal recognition particle [Exiguobacterium sibiricum
           255-15]
 gi|171990389|gb|ACB61311.1| GTP-binding signal recognition particle SRP54 G- domain
           [Exiguobacterium sibiricum 255-15]
          Length = 356

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 14/185 (7%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           I+V G  GVGKTT + KL+         KV L   DT+R +A++QL+ +AD        +
Sbjct: 165 IMVTGPTGVGKTTTLAKLAAYYRLTKQQKVGLITTDTYRISAVEQLRTYADIIDIPLRVA 224

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               +          +      DV++IDTAGR   ++  +         LK+    +   
Sbjct: 225 YDLQEFEQ------AKVDLSDCDVILIDTAGRNFLDAGYVEQ-------LKKRHDFSETD 271

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V  VL  T+    L Q++        +G I TK D T     +  +    ++P++ L  G
Sbjct: 272 VFLVLSLTSKYRDLEQIQQRFDQVPLSGFIFTKADETIDLWSIYGLTKKTQLPLFCLTTG 331

Query: 293 EGIND 297
           + + +
Sbjct: 332 QEVPE 336


>gi|296274011|ref|YP_003656642.1| flagellar biosynthetic protein FlhF [Arcobacter nitrofigilis DSM
           7299]
 gi|296098185|gb|ADG94135.1| flagellar biosynthetic protein FlhF [Arcobacter nitrofigilis DSM
           7299]
          Length = 386

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 99/240 (41%), Gaps = 14/240 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +   I+++ + +      S    + D  +LI + ++P+          R  ++++VG  
Sbjct: 137 EMTYTIMKKTIRQLPVGMKSNPHKINDFFKLILRRIIPIKNEVPLRKHQR-KIMMMVGPT 195

Query: 121 GVGKTTVIGKLSKKMSDA---GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           GVGKTT I KL+ + +       KV +   D+FR  AI+QL+ + +         EI   
Sbjct: 196 GVGKTTTIAKLAARYAYKLGENYKVGVVTLDSFRVGAIEQLQAYTNIMRLPL---EIVKK 252

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              L        + K  + + IDTAG    +   +     +I   ++     P   + VL
Sbjct: 253 PEDLVESLL---RLKDCNYIFIDTAGSSQYDIDKIE----LINEFQKKVDELPIEKVLVL 305

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            A   Q+ L  +   ++      L  TK+D T   G LI      K  + ++ +G+ + D
Sbjct: 306 PANVKQSDLMDIYTNYSRLNIDYLTFTKLDETKSFGNLISFAHKTKKSITYMSIGQNVPD 365


>gi|167582697|ref|ZP_02375571.1| flagellar biosynthesis regulator FlhF [Burkholderia thailandensis
           TXDOH]
          Length = 506

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 182 LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGY 238

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 239 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 296

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 297 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 350

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 351 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 404

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 405 AGQPRSALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 454


>gi|167838292|ref|ZP_02465151.1| flagellar biosynthesis regulator FlhF [Burkholderia thailandensis
           MSMB43]
          Length = 459

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 111/289 (38%), Gaps = 28/289 (9%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L        +
Sbjct: 135 LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGAGYDTL 194

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137
                      ++   L  L          R  V  ++G  GVGKTT   KL+ +  M  
Sbjct: 195 DAAAD--WAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMRF 250

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV L   D++R    +QL+I+           + G D           A+ +   ++
Sbjct: 251 GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHMV 304

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA- 256
           +IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A 
Sbjct: 305 LIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSAA 358

Query: 257 --------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                      G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 359 GQSEAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 407


>gi|291278830|ref|YP_003495665.1| flagellar biosynthesis protein FlhF [Deferribacter desulfuricans
           SSM1]
 gi|290753532|dbj|BAI79909.1| flagellar biosynthesis protein FlhF [Deferribacter desulfuricans
           SSM1]
          Length = 386

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 130/303 (42%), Gaps = 24/303 (7%)

Query: 20  GFASTSLKLKEGITDIISS-RRLDDGVREELEDLLI-RSDI---GVAV---AQKIVEELL 71
           G     + LKE I+DI      L +  +++++   +  + +    V V      ++    
Sbjct: 88  GLEKLEIVLKE-ISDIKKQLSELKNKSKDDIQTADLPENMVPYFNVLVKNGVDDLIAYKF 146

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+  K VS       +++L+ ++L  L     ++  S +  V+ ++G  GVGKTT I K
Sbjct: 147 LKKVEKRVSTDFNRAQLNKLLVQLLSELIPIEKDYFSSLKQKVVAMIGPTGVGKTTTIAK 206

Query: 131 LSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++  +S     KV L   DTFR  A++QL+ +AD        +    +  +      + A
Sbjct: 207 IAATLSLKLQKKVALITIDTFRIGAVEQLRTYADIVDIPLKVASNPEELKS------QIA 260

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +    D + +D+ GR   +   +  + K + V   + P      + VL  ++    L   
Sbjct: 261 ELSGFDYIFLDSMGRSQFDDSQIRELAKYMEVSPVITP------VLVLSMSSNHAELYDT 314

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
              + +     LI TK+D T R G L+ + V  KIP+  L  G+ +  D+E    K  + 
Sbjct: 315 FDRYRLLKPEYLIFTKLDETRRFGPLLNLPVLKKIPLLLLSTGQNVPEDIEIPDGKKIAI 374

Query: 309 VIT 311
            + 
Sbjct: 375 RLL 377


>gi|269961635|ref|ZP_06175997.1| Flagellar biosynthesis protein flhF [Vibrio harveyi 1DA3]
 gi|269833676|gb|EEZ87773.1| Flagellar biosynthesis protein flhF [Vibrio harveyi 1DA3]
          Length = 493

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 107/256 (41%), Gaps = 24/256 (9%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSE---------LIHKMLMPLSKPFNWDFSHRPHVILV 116
           +++ L     + +++ Q   Y   +         L+  +   +S P   D   R  V+ +
Sbjct: 227 LIKRLERMGVSPELADQMACYIPEDTKPARAWKALLSLVADQISIP-KQDILKRGGVVAL 285

Query: 117 VGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++ 
Sbjct: 286 LGPTGVGKTTTVAKLAARAAMEFGADNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKD 345

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            ++ A + Y+       +   ++++DTAG    +  L   +  +++     +        
Sbjct: 346 SNELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEVIHSY 394

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VL AT  +  L++          +G I+TK+D +   G  I +V+ + +PV ++  G+ 
Sbjct: 395 LVLPATAQRRVLQETLDHFRRIPLSGCILTKLDESLSLGEFISVVIQNAMPVAYIANGQR 454

Query: 295 IN-DLEPFVAKDFSAV 309
           +  D+     K   A 
Sbjct: 455 VPEDIVIAQPKYMIAK 470


>gi|295696133|ref|YP_003589371.1| flagellar biosynthetic protein FlhF [Bacillus tusciae DSM 2912]
 gi|295411735|gb|ADG06227.1| flagellar biosynthetic protein FlhF [Bacillus tusciae DSM 2912]
          Length = 396

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 19/235 (8%)

Query: 80  SVQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-MSD 137
            +   +  + E++   L P +  P   +      VI + G  GVGKTT I KL+     D
Sbjct: 178 EISHTVEQLREIVRSRLQPWVGSPMAAESR----VIALAGPTGVGKTTTIAKLAAIETLD 233

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           AG +V L   DT+R AA+DQL+ +A              +      E  +       D +
Sbjct: 234 AGRRVALITADTYRIAAVDQLRTYAQIIGIPCFVVYTPEEMRRTVGELAE------YDRI 287

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
            +DTAGR +        + +M++  K      P     VL  +     L +         
Sbjct: 288 FVDTAGRNYTQREHALSLREMLQAAK------PDETYLVLSLSGKGRDLYRTVEALREVA 341

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
               + TK D T      + +++    PV ++  G+G+ +D+    A   +  + 
Sbjct: 342 IDKYLFTKADETESLASAVDLLLAESRPVAYITTGQGVPDDIIEADAAYLAQRLF 396


>gi|262276380|ref|ZP_06054189.1| flagellar biosynthesis protein FlhF [Grimontia hollisae CIP 101886]
 gi|262220188|gb|EEY71504.1| flagellar biosynthesis protein FlhF [Grimontia hollisae CIP 101886]
          Length = 536

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 104/249 (41%), Gaps = 18/249 (7%)

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             +D        ++ EL+   ++  S+           VI ++G  GVGKTT I KL+ +
Sbjct: 284 IPEDTPPNEAWSELLELVADQVITTSENLLESGG----VIALLGPTGVGKTTTIAKLAAR 339

Query: 135 MSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +       + L   DTFR  A +QL  +          ++   + A + Y+       +
Sbjct: 340 AAMDFGPEDIALVTTDTFRIGAHEQLATYGRILGCPVKVAKDADELADILYQ------LR 393

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
              ++++DTAG    +  L   +  +I+     +  +    L VL AT+ +  L++    
Sbjct: 394 HRRLILLDTAGMGQRDLRLSEQLDTLIQ-----NNGSHIRSLLVLPATSQRRVLQETIDH 448

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
                 +G ++TK+D +   G L+ + + + +PV +L  G+ +  D+     K      +
Sbjct: 449 FRRIPLSGCVLTKLDESLSLGELLSVTIENALPVTYLADGQRVPEDIRQANGKYLVNKAS 508

Query: 312 GCLDYGEEK 320
             +D   E+
Sbjct: 509 ELMDQDSEQ 517


>gi|170694381|ref|ZP_02885535.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia graminis C4D1M]
 gi|170140804|gb|EDT08978.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia graminis C4D1M]
          Length = 742

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 103/264 (39%), Gaps = 24/264 (9%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + Q +V+ L       D  +      V  ++   L  +         
Sbjct: 454 LTKHLFAAGFSAQLVQMMVDNLPEDVDNMDDGMDW----VRSVLASNLPVMEDEDTL--M 507

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 508 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 567

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +        A      ++ +   +++IDT G    + ++   I  + R      
Sbjct: 568 VSVHAVKDS------ADLQLALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLSRA----- 616

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAV----AGTTGLIMTKMDGTARGGGLIPIVVTH 282
              P   L +L+AT+  + L +V   +          G I+TK+D     GG++  V+ +
Sbjct: 617 -GQPVQRLLLLNATSHGDTLNEVVQAYQRGPDQQPLAGCILTKLDEATNLGGVLDTVIRY 675

Query: 283 KIPVYFLGVGEGINDLEPFVAKDF 306
           K+PV+++  G+ + +      K F
Sbjct: 676 KLPVHYVSTGQKVPENLYVATKRF 699


>gi|192359435|ref|YP_001982608.1| flagellar biosynthesis protein FlhF [Cellvibrio japonicus Ueda107]
 gi|190685600|gb|ACE83278.1| flagellar biosynthesis protein FlhF [Cellvibrio japonicus Ueda107]
          Length = 527

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 16/207 (7%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   +  +   VG  GVGKTT IGKL+ +        KV L   DT+R AA DQL+  A 
Sbjct: 320 DIVDQGGIFAFVGPTGVGKTTTIGKLAARYVLQHGADKVALITTDTYRIAAHDQLRSLAR 379

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                    +  +    +          +   +++IDTAG  H +  L A +  +  + +
Sbjct: 380 ILRVPVKVVDEANSLDMVLR------SLRHCSLVLIDTAGFRHGDPHLKAQLHALAELKQ 433

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                   +   V+   +    L+     +  A   G I+TK+D TA  G  + +V+  +
Sbjct: 434 -------VNTYLVMSCNSQAQMLKASIHAYGAARLQGCILTKLDETASMGEALGVVMQSR 486

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +PV +   G+ I  ++E   A    + 
Sbjct: 487 LPVAYTTDGQDIPKNIEVARAHQLVSR 513


>gi|187925772|ref|YP_001897414.1| flagellar biosynthesis regulator FlhF [Burkholderia phytofirmans
           PsJN]
 gi|187716966|gb|ACD18190.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia phytofirmans PsJN]
          Length = 624

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 115/284 (40%), Gaps = 25/284 (8%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            +S    ++E    ++   R+  + VR  L   L  +     + Q +V+ L     + D 
Sbjct: 307 LSSMRGMMEEHFAGLLWGERQRRNPVRASLTKHLFAAGFSAQLVQMMVDNLPDDIESMDG 366

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137
            +      V  ++   L  +          R  V  ++G  GVGKTT   KL+ +  M  
Sbjct: 367 GMDW----VRSVLDSNLPVMEDE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMRF 420

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV L   D++R    +QL+I+           + G      A      ++ +   ++
Sbjct: 421 GASKVALLTTDSYRIGGHEQLRIFGKILGVSVHAVKDG------ADLQLALSELRNKHIV 474

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDT G    + ++   I  +           P   L +L+AT+  + L +V   +  A 
Sbjct: 475 LIDTIGMSQRDRLVSDQIAMLCHA------GQPVQRLLLLNATSHGDTLNEVVQAYQRAP 528

Query: 258 ----TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                 G I+TK+D     GG++  V+ +K+PV+++  G+ + +
Sbjct: 529 DQQPLAGCILTKLDEATNLGGVLDTVIRYKLPVHYVSTGQKVPE 572


>gi|94500296|ref|ZP_01306829.1| flagellar biosynthesis regulator FlhF [Oceanobacter sp. RED65]
 gi|94427595|gb|EAT12572.1| flagellar biosynthesis regulator FlhF [Oceanobacter sp. RED65]
          Length = 481

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 15/223 (6%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAG 147
           +LI + L+        D   R  V  +VG  G GKTT I K++ +  +      + L   
Sbjct: 249 QLILQDLVQHMNISPSDRLKRGGVYAMVGPTGAGKTTTIAKMAVRFTLEHENASIGLVTM 308

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D +R AA DQLK            ++     +    E          D+++IDTAG    
Sbjct: 309 DNYRLAAHDQLKTLGQILGVPVQVADQEHTLSKCLDE------LSDCDLVLIDTAGLTPQ 362

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           + +L   + ++  +  R+        L  L AT+    LR+V   +  AG  G ++TK+D
Sbjct: 363 HPMLNYQLEQLASLRGRV------HTLLTLPATSTSRVLRKVYHNYKAAGIGGCVLTKLD 416

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAV 309
             +  G  +  ++   + + +   G+ I +D     AK     
Sbjct: 417 EASSLGDALSALLESGLDLSYATDGQRIPDDFHVASAKALVKR 459


>gi|258621165|ref|ZP_05716199.1| Flagellar biosynthesis protein flhF [Vibrio mimicus VM573]
 gi|258586553|gb|EEW11268.1| Flagellar biosynthesis protein flhF [Vibrio mimicus VM573]
          Length = 483

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 128/313 (40%), Gaps = 25/313 (7%)

Query: 3   NQKVASESL---SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           ++K   E +   S +  + +   S    L+  ++ ++         RE L  +LI+    
Sbjct: 167 DRKTPDEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLER 223

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + V+ ++ ++L      +D    +    +  L+   +  +      D   R  V+ ++G 
Sbjct: 224 MGVSLEMADQLACY-IPEDTPPPKAWKALLGLVSDQIPVV----KHDILKRGGVVALLGP 278

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++
Sbjct: 279 TGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNE 338

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A + Y+       +   ++++DTAG    +  L   +  +++     +         VL
Sbjct: 339 LADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGETIHSYLVL 387

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  
Sbjct: 388 PATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPE 447

Query: 297 DLEPFVAKDFSAV 309
           D+     K   A 
Sbjct: 448 DIVIAQPKYMVAK 460


>gi|134281453|ref|ZP_01768161.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 305]
 gi|134247120|gb|EBA47206.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 305]
          Length = 583

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 259 LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGH 315

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 316 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 373

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 374 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 427

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 428 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 481

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 482 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 531


>gi|126440832|ref|YP_001060836.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           668]
 gi|126220325|gb|ABN83831.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 668]
          Length = 583

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 259 LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGH 315

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 316 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 373

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 374 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 427

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 428 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 481

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 482 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 531


>gi|218708838|ref|YP_002416459.1| flagellar biosynthesis regulator FlhF [Vibrio splendidus LGP32]
 gi|218321857|emb|CAV17836.1| Flagellar biosynthesis protein flhF [Vibrio splendidus LGP32]
          Length = 503

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 115/267 (43%), Gaps = 19/267 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + V+ ++ +++      +D    R    +  L+   +    K    
Sbjct: 230 REPLRAMLIKRLERMGVSAELADQMACY-IPEDTKPARAWKALLALVADQISVTQK---- 284

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  ++ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 285 DILKRGGIVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 344

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++  S+ A + Y+       +   ++++DTAG    +  L   +  +++   
Sbjct: 345 IMGCPVRVAKDSSELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ--- 395

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             +  +  +   VL AT  +  L++          +G I+TK+D +   G  I +V+ + 
Sbjct: 396 --ESGSVINSYLVLPATAQRKVLQETIEHFRRIPLSGCILTKLDESLSLGEFISVVIQNA 453

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +PV ++  G+ +  D+     K   A 
Sbjct: 454 LPVAYIANGQRVPEDIVIAQPKYMIAK 480


>gi|258626711|ref|ZP_05721535.1| Flagellar biosynthesis protein flhF [Vibrio mimicus VM603]
 gi|258581007|gb|EEW05932.1| Flagellar biosynthesis protein flhF [Vibrio mimicus VM603]
          Length = 483

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 128/313 (40%), Gaps = 25/313 (7%)

Query: 3   NQKVASESL---SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           ++K   E +   S +  + +   S    L+  ++ ++         RE L  +LI+    
Sbjct: 167 DRKTPDEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLER 223

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + V+ ++ ++L      +D    +    +  L+   +  +      D   R  V+ ++G 
Sbjct: 224 MGVSLEMADQLACY-IPEDTPPPKAWKALLGLVSDQIPVV----KHDILKRGGVVALLGP 278

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++
Sbjct: 279 TGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNE 338

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A + Y+       +   ++++DTAG    +  L   +  +++     +         VL
Sbjct: 339 LADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGETIHSYLVL 387

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  
Sbjct: 388 PATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPE 447

Query: 297 DLEPFVAKDFSAV 309
           D+     K   A 
Sbjct: 448 DIVIAQPKYMVAK 460


>gi|229591834|ref|YP_002873953.1| flagellar biosynthesis regulator FlhF [Pseudomonas fluorescens
           SBW25]
 gi|229363700|emb|CAY51079.1| putative flagellar biosynthesis protein [Pseudomonas fluorescens
           SBW25]
          Length = 438

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 21/223 (9%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-- 135
           +   Q     ++ L   +  P  +P          VI +VG  G+GKTT + KL+ +   
Sbjct: 190 EEPRQAWRMLLAHLARMIATPEIEPLEEGG-----VIAMVGPAGMGKTTTLAKLAARYVL 244

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                 + L + D++R  A +QLK      +      + G   A       ++       
Sbjct: 245 KYGAQNIALVSMDSYRIGAQEQLKTLGRILNVSVTHVDPGQSLANALDPLLRKR------ 298

Query: 196 VLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           V++IDTAG   ++  L   +  +  R +K  +         VL  T+ +  L      + 
Sbjct: 299 VVLIDTAGLQASDPALRMQLESLAGRGIKSKN-------YLVLATTSQKQVLTAAYHSYK 351

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             G  G I+TK+D TA  G ++ + ++H++PV +L  G  I D
Sbjct: 352 RCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPD 394


>gi|70729055|ref|YP_258791.1| flagellar biosynthesis regulator FlhF [Pseudomonas fluorescens
           Pf-5]
 gi|68343354|gb|AAY90960.1| flagellar biosynthesis protein FlhF [Pseudomonas fluorescens Pf-5]
          Length = 440

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 92/219 (42%), Gaps = 21/219 (9%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAG 139
           Q     ++ L   +  P  +P          VI +VG  G+GKTT + KL+ +       
Sbjct: 196 QAWRMLLAHLARMIQTPEVEPLEEGG-----VIAMVGPAGMGKTTTLAKLAARYVLKYGA 250

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             + L + D++R  A +QLK      +      + G   A       ++       V++I
Sbjct: 251 QNIALVSMDSYRIGAQEQLKTLGRILNVSVTHVDPGQSLAQALDPLLRKR------VVLI 304

Query: 200 DTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           DTAG   ++  L   +  +  R ++  +         VL  T+ +  L      +   G 
Sbjct: 305 DTAGLQASDPALRMQLESLAGRGIRAKN-------YLVLATTSQKQVLTAAYHSYKRCGL 357

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            G I+TK+D TA  G ++ + ++H++PV +L  G  I D
Sbjct: 358 AGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPD 396


>gi|83720875|ref|YP_443662.1| flagellar biosynthesis regulator FlhF [Burkholderia thailandensis
           E264]
 gi|167620813|ref|ZP_02389444.1| flagellar biosynthesis regulator FlhF [Burkholderia thailandensis
           Bt4]
 gi|83654700|gb|ABC38763.1| flagellar biosynthetic protein FlhF, putative [Burkholderia
           thailandensis E264]
          Length = 577

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 253 LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGY 309

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 310 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 367

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 368 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 421

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 422 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 475

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 476 AGQPRSALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 525


>gi|254183874|ref|ZP_04890465.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1655]
 gi|184214406|gb|EDU11449.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1655]
          Length = 583

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 259 LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGH 315

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 316 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 373

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 374 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 427

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 428 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 481

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 482 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 531


>gi|126454275|ref|YP_001068143.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           1106a]
 gi|242314712|ref|ZP_04813728.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1106b]
 gi|126227917|gb|ABN91457.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1106a]
 gi|242137951|gb|EES24353.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1106b]
          Length = 583

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 259 LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGY 315

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 316 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 373

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 374 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 427

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 428 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 481

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 482 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 531


>gi|5912336|emb|CAB56066.1| cell division protein [Rickettsia felis]
          Length = 136

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/136 (44%), Positives = 91/136 (66%)

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++AY A +++  + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+
Sbjct: 1   PASVAYRAMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVI 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   QVE F+     TGLI+TK+DG+A+ G L+ +V    +PVYF+G+GE I D
Sbjct: 61  DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVLVGVVQKFNLPVYFIGIGEKIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DF+  + G 
Sbjct: 121 LKIFNRHDFAKSLVGL 136


>gi|261252373|ref|ZP_05944946.1| flagellar biosynthesis protein FlhF [Vibrio orientalis CIP 102891]
 gi|260935764|gb|EEX91753.1| flagellar biosynthesis protein FlhF [Vibrio orientalis CIP 102891]
          Length = 490

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/267 (22%), Positives = 114/267 (42%), Gaps = 19/267 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + V+  + ++L      +D +  +    +  L+   +    K    
Sbjct: 217 REPLRAMLIKRLERMGVSSDLADQLACY-IPEDTAPTKAWKALLGLVADQVPVSQK---- 271

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT I KL+ +  M      V L + DT+R  A +QL I+  
Sbjct: 272 DILKRGGVVALLGPTGVGKTTTIAKLAARAAMEYGSDNVALVSTDTYRIGAHEQLAIYGR 331

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++  ++ A + Y+       +   ++++DTAG    +  L   +  +++   
Sbjct: 332 IMGCPVKVAKDSNELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ--- 382

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             +         VL AT  +  L++          +G IMTK+D +   G  + +VV + 
Sbjct: 383 --ETGEVIHSYLVLPATAQRKVLQETIDHFKRIPLSGCIMTKLDESLSLGEFLSVVVQNA 440

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +PV ++  G+ +  D+     K   A 
Sbjct: 441 LPVTYIANGQRVPEDIVIAQPKYMVAK 467


>gi|70943991|ref|XP_741976.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56520694|emb|CAH80619.1| hypothetical protein PC000130.04.0 [Plasmodium chabaudi chabaudi]
          Length = 201

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 79/201 (39%), Gaps = 12/201 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLT---- 72
                 +L   +  I ++   DD V EE    +   LI +DI V   + I   +      
Sbjct: 3   LTELGAQLTSALQKIQAAPVADDAVIEECLKEIVRALILADINVIYLKDIKSNIKKNIEK 62

Query: 73  --KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
               Y  +       Y V ELI   L+   K          +VIL VG+ G GKTT   K
Sbjct: 63  NAAAYGNNKKRLVQKYVVEELIK--LLEGKKESYVPKKGGRNVILFVGLQGSGKTTTCTK 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            +      G K  L   DTFR+ A DQLK  A +    F  S    D   +A +      
Sbjct: 121 YAHYYQKKGFKTALICADTFRAGAFDQLKQNAAKVKIPFYGSYSEVDPVKIATDGVNAFL 180

Query: 191 AKKVDVLIIDTAGRLHNNSIL 211
             K D++I+D++GR    + L
Sbjct: 181 KDKYDLIIVDSSGRHKQENDL 201


>gi|254194651|ref|ZP_04901082.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei S13]
 gi|169651401|gb|EDS84094.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei S13]
          Length = 583

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 259 LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGY 315

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 316 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 373

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 374 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 427

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 428 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 481

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 482 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 531


>gi|307731374|ref|YP_003908598.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1003]
 gi|307585909|gb|ADN59307.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1003]
          Length = 655

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 113/293 (38%), Gaps = 25/293 (8%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            +S    ++E    ++   R+  +     L   L  +     + Q +V+ L       D 
Sbjct: 338 LSSLRGMMEEQFAGLMWGDRQRRNPAHGALTKHLFAAGFSAQLVQMMVDNLPEDVDNMDD 397

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137
            +      V  ++   L  +          R  V  ++G  GVGKTT   KL+ +  M  
Sbjct: 398 GMDW----VRSVLASNLPVMEDEDTL--MERGGVFALMGPTGVGKTTTTAKLAARCVMRF 451

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV L   D++R    +QL+I+           +        A      ++ +   ++
Sbjct: 452 GASKVALLTTDSYRIGGHEQLRIFGKILGVSVHAVKDS------ADLQLALSELRNKHIV 505

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-- 255
           +IDT G    + ++   I  + R         P   L +L+AT+  + L +V   +    
Sbjct: 506 LIDTIGMSQRDRLVSDQIAMLSRA------GQPVQRLLLLNATSHGDTLNEVVQAYQRGP 559

Query: 256 --AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
                 G I+TK+D     GG++  V+ +K+PV+++  G+ + +      K F
Sbjct: 560 DQQPLAGCILTKLDEATNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKRF 612


>gi|237814233|ref|YP_002898684.1| flagellar biosynthetic protein FlhF [Burkholderia pseudomallei
           MSHR346]
 gi|237506716|gb|ACQ99034.1| flagellar biosynthetic protein FlhF [Burkholderia pseudomallei
           MSHR346]
          Length = 583

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 259 LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGY 315

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 316 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 373

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 374 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 427

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 428 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 481

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 482 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 531


>gi|53720903|ref|YP_109889.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           K96243]
 gi|76810293|ref|YP_331478.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           1710b]
 gi|254186352|ref|ZP_04892869.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254259130|ref|ZP_04950184.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1710a]
 gi|254298804|ref|ZP_04966255.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           406e]
 gi|52211317|emb|CAH37306.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           K96243]
 gi|76579746|gb|ABA49221.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1710b]
 gi|157808601|gb|EDO85771.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           406e]
 gi|157934037|gb|EDO89707.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254217819|gb|EET07203.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           1710a]
          Length = 583

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 259 LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGY 315

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 316 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 373

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 374 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 427

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 428 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 481

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 482 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 531


>gi|94312632|ref|YP_585841.1| putative flagellar biosynthetic protein FlhF [Cupriavidus
           metallidurans CH34]
 gi|93356484|gb|ABF10572.1| putative flagellar biosynthetic protein FlhF [Cupriavidus
           metallidurans CH34]
          Length = 825

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 118/305 (38%), Gaps = 31/305 (10%)

Query: 17  LTKGFASTSLKLKEGITDIISSR---RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           L    AS    L+     + S      + D +RE L + ++ +     +++ ++  L   
Sbjct: 102 LRGELASMRSMLERQFAGLSSGAGNVAVGDPLRESLFEWMVNAGFSGQLSRTLISRL--- 158

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
                      +  + + I K +  LS         +  V+ ++G  GVGKTT   KL+ 
Sbjct: 159 --PVGTDRPAAMSWIRQEIAKKVPVLSNE--DALFDQGGVLALIGPTGVGKTTTTAKLAA 214

Query: 134 KM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        ++ L   D FR  A +QL+I+ D         +  +D       A    + 
Sbjct: 215 RYVLRHGADRLALLTTDRFRIGAHEQLRIYGDILGVPVHAVKDAADLR----FALSAMKD 270

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K   ++IIDT G    +  L   I  +  V       AP   + +L+     + L +V  
Sbjct: 271 KH--LVIIDTVGMSQRDRSLSDQIAMLAGV------QAPMQRVLLLNGAAHGDTLNEVVH 322

Query: 252 FH------AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAK 304
            +         G  G I++K+D     G ++ +V+ H++PV++   G+ + + LE   A 
Sbjct: 323 AYRHDAAGDAGGIDGCIISKLDEATHLGSVLDVVIRHRLPVFYASTGQRVPEHLELAQAS 382

Query: 305 DFSAV 309
                
Sbjct: 383 TLVER 387


>gi|262166182|ref|ZP_06033919.1| flagellar biosynthesis protein FlhF [Vibrio mimicus VM223]
 gi|262025898|gb|EEY44566.1| flagellar biosynthesis protein FlhF [Vibrio mimicus VM223]
          Length = 493

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 128/313 (40%), Gaps = 25/313 (7%)

Query: 3   NQKVASESL---SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           ++K   E +   S +  + +   S    L+  ++ ++         RE L  +LI+    
Sbjct: 177 DRKTPDEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLER 233

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + V+ ++ ++L      +D    +    +  L+   +  +      D   R  V+ ++G 
Sbjct: 234 MGVSLEMADQLACY-IPEDTPPPKAWKALLGLVSDQIPVV----KHDILKRGGVVALLGP 288

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++
Sbjct: 289 TGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNE 348

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A + Y+       +   ++++DTAG    +  L   +  +++     +         VL
Sbjct: 349 LADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGETIHSYLVL 397

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  
Sbjct: 398 PATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPE 457

Query: 297 DLEPFVAKDFSAV 309
           D+     K   A 
Sbjct: 458 DIVIAQPKYMVAK 470


>gi|85712285|ref|ZP_01043336.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
 gi|85693912|gb|EAQ31859.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
          Length = 433

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 117/305 (38%), Gaps = 30/305 (9%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           S S I +L          L+  ++ ++  + ++    E +  LL++  + + ++++I ++
Sbjct: 125 SASEIAELKSQIKGIQNLLQHQLSGLM-KQEIERE--EPMRALLVKRLMTMGISERIADQ 181

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +     A  +     + D  E   ++L       + D   R   + +VG  GVGKTT I 
Sbjct: 182 I-----ACFIPEGDDIEDSWEQALQLLEGQLNTTHDDILTRGGAVALVGPTGVGKTTTIA 236

Query: 130 KLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           KL+ +         V L   DTFR  A +QLK++                   +A +A +
Sbjct: 237 KLAARYAQRHGSDSVALITTDTFRIGASEQLKVYGRIIGCPV----------KIANDAKE 286

Query: 188 QAQAK----KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A A        +++IDTAG    +  L   +G++++  +            VL AT   
Sbjct: 287 LADAMLSLRDKRLILIDTAGMGQRDKRLSEQLGQILQNKRLRI-----RPYLVLSATAQT 341

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFV 302
             L             G I TK+D     G  I + +   + V +L  G+ +  D+    
Sbjct: 342 QVLNDTVKQFKTLPLAGCIFTKLDECLSLGESISVAIEQGLAVGYLTHGQQVPEDIRVAD 401

Query: 303 AKDFS 307
                
Sbjct: 402 EHYMV 406


>gi|217423827|ref|ZP_03455327.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 576]
 gi|226193076|ref|ZP_03788686.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           Pakistan 9]
 gi|217392890|gb|EEC32912.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei 576]
 gi|225934676|gb|EEH30653.1| flagellar biosynthesis protein FlhF [Burkholderia pseudomallei
           Pakistan 9]
          Length = 583

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 259 LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGY 315

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 316 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 373

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 374 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 427

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 428 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 481

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 482 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 531


>gi|262170941|ref|ZP_06038619.1| flagellar biosynthesis protein FlhF [Vibrio mimicus MB-451]
 gi|261892017|gb|EEY38003.1| flagellar biosynthesis protein FlhF [Vibrio mimicus MB-451]
          Length = 493

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 128/313 (40%), Gaps = 25/313 (7%)

Query: 3   NQKVASESL---SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           ++K   E +   S +  + +   S    L+  ++ ++         RE L  +LI+    
Sbjct: 177 DRKTPDEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLER 233

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + V+ ++ ++L      +D    +    +  L+   +  +      D   R  V+ ++G 
Sbjct: 234 MGVSLEMADQLACY-IPEDTPPPKAWKALLGLVSDQIPVV----KHDILKRGGVVALLGP 288

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++
Sbjct: 289 TGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNE 348

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A + Y+       +   ++++DTAG    +  L   +  +++     +         VL
Sbjct: 349 LADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGETIHSYLVL 397

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  
Sbjct: 398 PATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPE 457

Query: 297 DLEPFVAKDFSAV 309
           D+     K   A 
Sbjct: 458 DIVIAQPKYMVAK 470


>gi|156975415|ref|YP_001446322.1| flagellar biosynthesis regulator FlhF [Vibrio harveyi ATCC
           BAA-1116]
 gi|156527009|gb|ABU72095.1| hypothetical protein VIBHAR_03146 [Vibrio harveyi ATCC BAA-1116]
          Length = 503

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 107/256 (41%), Gaps = 24/256 (9%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSE---------LIHKMLMPLSKPFNWDFSHRPHVILV 116
           +++ L     + +++ Q   Y   +         L+  +   +S P   D   R  V+ +
Sbjct: 237 LIKRLERMGVSPELADQMACYIPEDTKPARAWKALLSLVADQISIP-KQDILKRGGVVAL 295

Query: 117 VGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++ 
Sbjct: 296 LGPTGVGKTTTVAKLAARAAMEFGADNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKD 355

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            ++ A + Y+       +   ++++DTAG    +  L   +  +++     +        
Sbjct: 356 SNELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEVIHSY 404

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VL AT  +  L++          +G I+TK+D +   G  I +V+ + +PV ++  G+ 
Sbjct: 405 LVLPATAQRRVLQETLDHFRRIPLSGCILTKLDESLSLGEFISVVIQNAMPVAYIANGQR 464

Query: 295 IN-DLEPFVAKDFSAV 309
           +  D+     K   A 
Sbjct: 465 VPEDIVIAQPKYMIAK 480


>gi|148976428|ref|ZP_01813134.1| flagellar biosynthesis regulator FlhF [Vibrionales bacterium
           SWAT-3]
 gi|145964251|gb|EDK29507.1| flagellar biosynthesis regulator FlhF [Vibrionales bacterium
           SWAT-3]
          Length = 493

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 115/267 (43%), Gaps = 19/267 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + V+ ++ +++      +D    R    +  L+   +    K    
Sbjct: 220 REPLRAMLIKRLERMGVSAELADQMACY-IPEDTKPARAWKALLALVADQISVTQK---- 274

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  ++ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 275 DILKRGGIVALLGPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGR 334

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++  S+ A + Y+       +   ++++DTAG    +  L   +  +++   
Sbjct: 335 IMGCPVRVAKDSSELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ--- 385

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             +  +  +   VL AT  +  L++          +G IMTK+D +   G  I +V+ + 
Sbjct: 386 --ESGSVINSYLVLPATAQRKVLQETIEHFRRIPLSGCIMTKLDESLSLGEFISVVIQNA 443

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +PV ++  G+ +  D+     K   A 
Sbjct: 444 LPVAYIANGQRVPEDIVIAQPKYMIAK 470


>gi|300311343|ref|YP_003775435.1| flagellar biosynthesis GTP-binding protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074128|gb|ADJ63527.1| flagellar biosynthesis GTP-binding protein [Herbaspirillum
           seropedicae SmR1]
          Length = 494

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 124/308 (40%), Gaps = 28/308 (9%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++ SE +S IR +     +   ++  G T       L   V +E+    + +    ++++
Sbjct: 172 EILSEVMSEIRSMRGVLETQLAEISWGGTQ--KREPLKGIVLKEM----LAAGFSASLSR 225

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            I E L     ++D+        V  ++ + L  L+       +    V  +VG  GVGK
Sbjct: 226 LITENLPANSKSQDIMFW-----VKSVLARNLNTLANENELLENGG--VFAMVGPTGVGK 278

Query: 125 TTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           TT   KL+ +  M     K+ L   D +R    +QL+I+           +  +D   +A
Sbjct: 279 TTTTAKLAARCVMRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLR-IA 337

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            E  K         ++IDTAG    + ++      +               L  L+AT  
Sbjct: 338 LEELK-----GKHTVLIDTAGVGQRDQMVAEQDAML------TGAGVDIKRLLCLNATAT 386

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPF 301
              L +V   ++ +G  G I+TK+D  A  G ++ +V+ HK+ ++++  G+ +  DL   
Sbjct: 387 GGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVA 446

Query: 302 VAKDFSAV 309
                +  
Sbjct: 447 NKLYLADR 454


>gi|295706265|ref|YP_003599340.1| flagellar biosynthetic protein FlhF [Bacillus megaterium DSM 319]
 gi|294803924|gb|ADF40990.1| flagellar biosynthetic protein FlhF [Bacillus megaterium DSM 319]
          Length = 365

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 17/221 (7%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLK 159
           K   W    + +V  VVG  GVGKTT + KL+ K   +   K+     DT+R +AI+QLK
Sbjct: 160 KASEWSGPFKKYVS-VVGPTGVGKTTTLAKLAAKCVLEHNQKIAFITTDTYRISAIEQLK 218

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            +A   +A            A   +A  + +A   DV+ IDTAGR       +  + K+I
Sbjct: 219 TYASILNAPL----TICYNGADFKKALLETEA--YDVIFIDTAGRNFLEQQYVNDLKKII 272

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
              + L          VL  T+  + ++ V    A      LI TK D T R G L+ ++
Sbjct: 273 TFQEDL------QTFLVLALTSKVSDMKAVYERFASLPVDHLIFTKQDETTRKGSLLNML 326

Query: 280 VTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLDYGEE 319
             +     F   G+ +  D+  F  K+F   + G  D+ +E
Sbjct: 327 YHYGQRAAFTTNGQDVPEDVSAFKIKEFIDDVFG--DWKDE 365


>gi|269965688|ref|ZP_06179801.1| Flagellar biosynthesis protein flhF [Vibrio alginolyticus 40B]
 gi|269829756|gb|EEZ83992.1| Flagellar biosynthesis protein flhF [Vibrio alginolyticus 40B]
          Length = 495

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 106/255 (41%), Gaps = 22/255 (8%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELI-----HKMLMPLSKPFNW---DFSHRPHVILVV 117
           +++ L     + +++ Q   Y   +         +L  ++   N    D   R  V+ ++
Sbjct: 229 LIKRLERMGVSPELADQMACYIPEDTKPARAWKALLSLVADQINIPKQDILKRGGVVALL 288

Query: 118 GVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  
Sbjct: 289 GPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDS 348

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           ++ A + Y+       +   ++++DTAG    +  L   +  +++     +         
Sbjct: 349 NELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEVIHSYL 397

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VL AT  +  L++          +G IMTK+D +   G  I +V+ + +PV ++  G+ +
Sbjct: 398 VLPATAQRRVLQETLDHFRRIPLSGCIMTKLDESLSLGEFISVVIQNAMPVAYIANGQRV 457

Query: 296 N-DLEPFVAKDFSAV 309
             D+     K   A 
Sbjct: 458 PEDIVIAQPKYMLAK 472


>gi|28807227|dbj|BAC60497.1| flagellar biosynthesis protein FlhF [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 489

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 106/255 (41%), Gaps = 22/255 (8%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELI-----HKMLMPLSKPFNW---DFSHRPHVILVV 117
           +++ L     + +++ Q   Y   +         +L  ++   N    D   R  V+ ++
Sbjct: 223 LIKRLERMGVSPELADQMACYIPEDTKPARAWKALLSLVADQINIPKQDILKRGGVVALL 282

Query: 118 GVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  
Sbjct: 283 GPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDS 342

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           ++ A + Y+       +   ++++DTAG    +  L   +  +++     +         
Sbjct: 343 NELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEVIHSYL 391

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VL AT  +  L++          +G I+TK+D +   G  I +V+ + +PV ++  G+ +
Sbjct: 392 VLPATAQRRVLQETLDHFRRIPLSGCILTKLDESLSLGEFISVVIQNAMPVAYIANGQRV 451

Query: 296 N-DLEPFVAKDFSAV 309
             D+     K   A 
Sbjct: 452 PEDIVIAQPKYMLAK 466


>gi|254228446|ref|ZP_04921872.1| SRP54-type protein, GTPase domain [Vibrio sp. Ex25]
 gi|151939034|gb|EDN57866.1| SRP54-type protein, GTPase domain [Vibrio sp. Ex25]
          Length = 495

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 106/255 (41%), Gaps = 22/255 (8%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELI-----HKMLMPLSKPFNW---DFSHRPHVILVV 117
           +++ L     + +++ Q   Y   +         +L  ++   N    D   R  V+ ++
Sbjct: 229 LIKRLERMGVSPELADQMACYIPEDTKPARAWKALLSLVADQINIPKQDILKRGGVVALL 288

Query: 118 GVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  
Sbjct: 289 GPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDS 348

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           ++ A + Y+       +   ++++DTAG    +  L   +  +++     +         
Sbjct: 349 NELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEVIHSYL 397

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VL AT  +  L++          +G IMTK+D +   G  I +V+ + +PV ++  G+ +
Sbjct: 398 VLPATAQRRVLQETLDHFRRIPLSGCIMTKLDESLSLGEFISVVIQNAMPVAYIANGQRV 457

Query: 296 N-DLEPFVAKDFSAV 309
             D+     K   A 
Sbjct: 458 PEDIVIAQPKYMLAK 472


>gi|89094440|ref|ZP_01167380.1| flagellar biosynthetic protein FlhF, putative [Oceanospirillum sp.
           MED92]
 gi|89081332|gb|EAR60564.1| flagellar biosynthetic protein FlhF, putative [Oceanospirillum sp.
           MED92]
          Length = 474

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 15/197 (7%)

Query: 116 VVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            VG  GVGKTT IGKL+ +  +      + L   DT+R AA +QL+ +           +
Sbjct: 265 FVGPTGVGKTTTIGKLAARHVLKYGSSSLALVTTDTYRIAAHEQLRTFGRILDVPVRVVD 324

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +    + +        +   +++IDTAG         + +  +  V  RL        
Sbjct: 325 ENNSLDEVLH------SLRNKRLVLIDTAGLNAQEPHSESQLEMLASVTLRLKK------ 372

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L V+  ++ +  + Q    +   G  G +++KMD +   G  I ++V  ++PV ++  G+
Sbjct: 373 LLVVSCSSQRRVVEQAYNAYQSLGLNGCVLSKMDESGSLGEAISLIVEKRLPVTYVTDGQ 432

Query: 294 GI-NDLEPFVAKDFSAV 309
            I +D+     KD  + 
Sbjct: 433 RIPDDINVAQKKDLVSR 449


>gi|262404420|ref|ZP_06080975.1| flagellar biosynthesis protein FlhF [Vibrio sp. RC586]
 gi|262349452|gb|EEY98590.1| flagellar biosynthesis protein FlhF [Vibrio sp. RC586]
          Length = 496

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 130/313 (41%), Gaps = 25/313 (7%)

Query: 3   NQKVASE---SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           ++KV  E   ++S +  + +   S    L+  ++ ++         RE L  +LI+    
Sbjct: 180 DRKVPDEPVVAVSELESMREEMTSIRRLLEHQVSGLMWQEV---ERREPLRAMLIKRLER 236

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + V+ ++ ++L      ++    +    +  L+   +  +      D   R  V+ ++G 
Sbjct: 237 MGVSLEMADQLACY-IPEETPPPKAWKALLGLVSDQIPVV----KHDILKRGGVVALLGP 291

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  ++
Sbjct: 292 TGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNE 351

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A + Y+       +   ++++DTAG    +  L   +  +++     +         VL
Sbjct: 352 LADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGETIHSYLVL 400

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L++          +G IMTK+D     G  + +VV + +PV ++  G+ +  
Sbjct: 401 PATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPE 460

Query: 297 DLEPFVAKDFSAV 309
           D+     K   A 
Sbjct: 461 DIVIAQPKYMVAK 473


>gi|85859185|ref|YP_461387.1| flagellar biosynthesis protein [Syntrophus aciditrophicus SB]
 gi|85722276|gb|ABC77219.1| flagellar biosynthesis protein [Syntrophus aciditrophicus SB]
          Length = 390

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 113/264 (42%), Gaps = 22/264 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           LI   I    A K VE++  +    +  +VQ  L  +  LI + L     PF        
Sbjct: 141 LISKGISKEKAWKAVEKVKNEFASGQIENVQAGLSVIESLIGQSL-----PFVNHSEKEK 195

Query: 112 HVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF- 169
            V + +G  GVGKTT + KL +         V L   DT+R AA++QLK +A        
Sbjct: 196 RVKVFIGPTGVGKTTTLAKLSAYHALSKKKTVGLITTDTYRIAAVEQLKTYARIIGIPLR 255

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V         +L   A K       DV+++DT GR  N+      I  + ++ + L    
Sbjct: 256 VAPRKDDFKQSLKKFADK-------DVILVDTPGRSSND------IVNLKKLNETLRSDI 302

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P     ++  T+ + ++ +V + + +     +I+TK D + R G L  ++     PV ++
Sbjct: 303 PFESNLLISLTSSRESMMEVALRYRIFDYDRIILTKADESLRVGFLWDVLDRISKPVSYI 362

Query: 290 GVGEGIN-DLEPFVAKDFSAVITG 312
             G+ +  D+E    +  + +I G
Sbjct: 363 TNGQNVPHDIEEATPQKIARMIIG 386


>gi|154686057|ref|YP_001421218.1| flagellar biosynthesis regulator FlhF [Bacillus amyloliquefaciens
           FZB42]
 gi|154351908|gb|ABS73987.1| FlhF [Bacillus amyloliquefaciens FZB42]
          Length = 363

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 17/248 (6%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + E L +   + D++   V   + +L+ K L    +    +     +V+L  G  G GKT
Sbjct: 130 LSELLRSSIVSGDLTEDNVSSKLQDLLVKKLPSADRW--QEGIQSKYVVLF-GSTGAGKT 186

Query: 126 TVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T + KL+   M     K+     DT+R AA++QLK +A+   A          +     +
Sbjct: 187 TTLAKLAASSMLTEHKKIAFMTTDTYRIAAVEQLKTYAELLQAPL----EVCYSKEECLK 242

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A ++      D + IDTAGR       +  + +MI     L          VL A+    
Sbjct: 243 ALEKFAE--YDHVFIDTAGRNFKEEQYITELQEMIPFESGLQS------FLVLSASAKYE 294

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVA 303
            ++Q     +       I TK D TA  G +  ++   +I   +L  G+ +  D+     
Sbjct: 295 DMKQGLKQFSGVPVNQFIFTKTDETASLGSVFQVLSESRIGAAYLTNGQDVPEDILSASP 354

Query: 304 KDFSAVIT 311
           K+F  ++ 
Sbjct: 355 KEFVRMLL 362


>gi|33601534|ref|NP_889094.1| flagellar biosynthesis protein [Bordetella bronchiseptica RB50]
 gi|33575970|emb|CAE33049.1| flagellar biosynthesis protein [Bordetella bronchiseptica RB50]
          Length = 790

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 101/269 (37%), Gaps = 25/269 (9%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L+ +   + +A+ ++E L      + +   + L      +   L  L +  +    
Sbjct: 138 LFRALLEAGFSMPLARILLERL-----PQALDATQALAWARNELVTHLPVLRREDDLLAG 192

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               V  +VG  GVGKTT + KL+ +    +   +V +   D FR  A++QL+I+     
Sbjct: 193 GG--VFALVGPTGVGKTTTLAKLAARCVAREGREQVAMLTTDNFRIGALEQLQIYGRLMG 250

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                     +                  +++IDT G    +  +      +    K   
Sbjct: 251 IPAHSVRDADELRD------ALGSLGNRRIILIDTTGISQRDRQVAGQAAMLCNAGK--- 301

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAV---AGTTGLIMTKMDGTARGGGLIPIVVTHK 283
              P   L VL+A +  + L +V   +         G I+TK+D  +R    +   + H+
Sbjct: 302 ---PVRRLLVLNAASQGDTLDEVAHAYRNGVGEDVVGCIITKLDEASRLAPALDTAIRHR 358

Query: 284 IPVYFLGVGEGIND-LEPFVAKDFSAVIT 311
           +P++++  G+ + + +    A +      
Sbjct: 359 LPIHYVSYGQKVPEHMALARADELIDRTL 387


>gi|187926253|ref|YP_001892598.1| GTP-binding signal recognition particle SRP54 G- domain [Ralstonia
           pickettii 12J]
 gi|241665741|ref|YP_002984100.1| flagellar biosynthesis regulator FlhF [Ralstonia pickettii 12D]
 gi|187728007|gb|ACD29171.1| GTP-binding signal recognition particle SRP54 G- domain [Ralstonia
           pickettii 12J]
 gi|240867768|gb|ACS65428.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Ralstonia pickettii 12D]
          Length = 632

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 124/298 (41%), Gaps = 22/298 (7%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVA 61
            + + +E+    R++     +    L + ++ + S   +L D VR  L   ++ +     
Sbjct: 298 KESIRAETDVMTRRMVGEIETLKSTLNDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQ 357

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           + + ++E +      +  + +  L  V   I K L  +S         +  V  ++G  G
Sbjct: 358 LTRYVLENM-----PQHDAYEGALDFVQRAIEKNLSTVSDEN--SLLDQGGVFALMGPTG 410

Query: 122 VGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           VGKTT   KL+ +  +     +V L + D++R    +QL+I+           +   D +
Sbjct: 411 VGKTTTTAKLAARFVLRHGASRVALLSTDSYRIGGHEQLRIYGKILGVSVHAVKDAQDLS 470

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
                A    + K   V++IDT G    +  +   +  +  V   +        L +L+A
Sbjct: 471 L----ALNDLREKH--VVLIDTIGMSQRDRAVSEQMAMLHAVGPSI------KRLLLLNA 518

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            +    L +V   +  A   G I+TK+D  A  G  + +++  ++P++++  G+ + +
Sbjct: 519 ASNGKTLDEVVGAYRDANLAGCILTKIDEAASVGHAMDVMIRRRLPLHYVSYGQRVPE 576


>gi|310659022|ref|YP_003936743.1| flagella-associated protein [Clostridium sticklandii DSM 519]
 gi|308825800|emb|CBH21838.1| flagella-associated protein [Clostridium sticklandii]
          Length = 408

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 133/304 (43%), Gaps = 33/304 (10%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL----LIRSDIGVAVAQKIVEE 69
           I ++       + +  +        +  +D V  EL+      L+   I   ++++IV E
Sbjct: 129 IDEIKTVIKDLNERFVQTF------KTEEDEVIHELKTKHSNKLVEKGISSLLSEEIVNE 182

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            L+K              + ++I++     S+  N  F  + +V   VG  GVGKTT + 
Sbjct: 183 ALSK------YNDCNRDSIFKVINERFNNFSEN-NMKFLKKYNV--FVGPTGVGKTTTLA 233

Query: 130 KLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           K++  ++   G ++     DT+R +A++QL+ +A+  +     +       A   EA K+
Sbjct: 234 KIASNLAIEEGKRIGFMTLDTYRISAVEQLRTYAEILNCPIEVAYDK----ADVSEAVKR 289

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +++  D + IDTAGR H N         MI + + ++      V  VL A   +  ++ 
Sbjct: 290 LESR--DSIFIDTAGRSHRNK------VHMIELEEIIESIDEKEVFLVLSANFNKEDIKD 341

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFS 307
           +   ++      +++TKMD T+R G +  I+     PV ++  G+ + +D+E F    F 
Sbjct: 342 ILEAYSFIDDFSIVITKMDETSREGLVFDIINAANKPVSYITYGQNVPDDIEIFDFNKFV 401

Query: 308 AVIT 311
               
Sbjct: 402 NEFL 405


>gi|261209998|ref|ZP_05924297.1| flagellar biosynthesis protein FlhF [Vibrio sp. RC341]
 gi|260840944|gb|EEX67481.1| flagellar biosynthesis protein FlhF [Vibrio sp. RC341]
          Length = 490

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 19/267 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + V+ ++ ++L      ++    +    +  L+   +         
Sbjct: 217 REPLRAMLIKRLERMGVSLEMADQLACY-IPEETPPPKAWKALLGLVSDQIP----VIKH 271

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 272 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGR 331

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++  ++ A + Y+       +   ++++DTAG    +  L   +  +++   
Sbjct: 332 IMGCPVRVAKDSNELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ--- 382

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             +         VL AT  +  L++          +G IMTK+D     G  + +VV + 
Sbjct: 383 --ESGETIHSYLVLPATAQRKVLQETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNA 440

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +PV ++  G+ +  D+     K   A 
Sbjct: 441 LPVAYIANGQRVPEDIVIAQPKYMVAK 467


>gi|253998501|ref|YP_003050564.1| flagellar biosynthesis regulator FlhF [Methylovorus sp. SIP3-4]
 gi|253985180|gb|ACT50037.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methylovorus sp. SIP3-4]
          Length = 452

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 124/313 (39%), Gaps = 25/313 (7%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLD--DGVREELEDLLIRSDIG 59
             Q  A +S   I  +     +    ++  + +I S   +   D V+    ++L+ +   
Sbjct: 120 PAQAAAPQSNKQINDMLNEIRNMRSVIESQLVEI-SWGNIQHRDPVKSNTLNMLLSAGFS 178

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            A++++I E +   R + + +       V  ++ K L  +  P   +  +R  V  ++G 
Sbjct: 179 AALSRQIAENMPDHRTSAEANTW-----VQSILEKNLQAI--PNEDEILNRGGVFALIGP 231

Query: 120 NGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT   KL+ +        K+ L   D +R    +QL+I+           +  +D
Sbjct: 232 TGVGKTTTTAKLAARFVMKHGPGKLGLITTDAYRIGGHEQLRIYGKILGVMVHAVKDEAD 291

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A E  K         ++IDT G    + ++   I  +    + +        L  L
Sbjct: 292 L-KIALEELK-----GKHTILIDTVGVSQKDRMVAEQIAMLSSTRQPIKK------LLCL 339

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
           +AT     L  V   + V    G I+TK+D  A  G  + +++  K+ +Y++  G+ +  
Sbjct: 340 NATNTGETLTDVVRAYKVKQLDGCIITKLDEAATIGSALDVIIREKLRLYYVANGQRVPE 399

Query: 297 DLEPFVAKDFSAV 309
           DL     K     
Sbjct: 400 DLHVANKKLLIHR 412


>gi|313200587|ref|YP_004039245.1| GTP-binding signal recognition particle srp54 g- domain-containing
           protein [Methylovorus sp. MP688]
 gi|312439903|gb|ADQ84009.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methylovorus sp. MP688]
          Length = 451

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 124/313 (39%), Gaps = 25/313 (7%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLD--DGVREELEDLLIRSDIG 59
             Q  A +S   I  +     +    ++  + +I S   +   D V+    ++L+ +   
Sbjct: 119 PAQAAAPQSNKQINDMLNEIRNMRSVIESQLVEI-SWGNIQHRDPVKSNTLNMLLSAGFS 177

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            A++++I E +   R + + +       V  ++ K L  +  P   +  +R  V  ++G 
Sbjct: 178 AALSRQIAENMPDHRTSAEANTW-----VQSILEKNLQAI--PNEDEILNRGGVFALIGP 230

Query: 120 NGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT   KL+ +        K+ L   D +R    +QL+I+           +  +D
Sbjct: 231 TGVGKTTTTAKLAARFVMKHGPGKLGLITTDAYRIGGHEQLRIYGKILGVMVHAVKDEAD 290

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A E  K         ++IDT G    + ++   I  +    + +        L  L
Sbjct: 291 L-KIALEELK-----GKHTILIDTVGVSQKDRMVAEQIAMLSSTRQPIKK------LLCL 338

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
           +AT     L  V   + V    G I+TK+D  A  G  + +++  K+ +Y++  G+ +  
Sbjct: 339 NATNTGETLTDVVRAYKVKQLDGCIITKLDEAATIGSALDVIIREKLRLYYVANGQRVPE 398

Query: 297 DLEPFVAKDFSAV 309
           DL     K     
Sbjct: 399 DLHVANKKLLIHR 411


>gi|153818948|ref|ZP_01971615.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           NCTC 8457]
 gi|126510510|gb|EAZ73104.1| signal recognition particle-docking protein FtsY [Vibrio cholerae
           NCTC 8457]
          Length = 266

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 1/144 (0%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    + S+  +L +  + T   +  G   +   +++DD + EELE+ L+ +D+G+    
Sbjct: 74  EQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTS 133

Query: 65  KIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           KI+  L  +   + +     LY  + E + ++L  + +P   D   +P+VIL+VGVNGVG
Sbjct: 134 KIIANLTARASRQQLRDGEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVG 193

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAG 147
           KTT IGKL+K+    G KVM    
Sbjct: 194 KTTTIGKLAKQFQAQGKKVMWQRA 217


>gi|294500919|ref|YP_003564619.1| flagellar biosynthetic protein FlhF [Bacillus megaterium QM B1551]
 gi|294350856|gb|ADE71185.1| flagellar biosynthetic protein FlhF [Bacillus megaterium QM B1551]
          Length = 365

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 17/221 (7%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLK 159
           K   W    + +V  VVG  GVGKTT + KL+ K   +   K+     DT+R +AI+QLK
Sbjct: 160 KASEWSGPFKKYVS-VVGPTGVGKTTTLAKLAAKCVLEHNQKIAFITTDTYRISAIEQLK 218

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            +A   +A            A   +A  + +A   DV+ IDTAGR       +  + K+I
Sbjct: 219 TYASILNAPL----TICYNGADFKKALLETEA--YDVIFIDTAGRNFLEQQYVNDLKKII 272

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
              + L          VL  T+  + ++ V    A      LI TK D T   G L+ ++
Sbjct: 273 TFQEDL------QTFLVLALTSKVSDMKAVYERFASLPVDHLIFTKQDETTHKGSLLNML 326

Query: 280 VTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLDYGEE 319
             +     F   G+ +  D+  F  K+F   + G  D+ +E
Sbjct: 327 YHYGKRAAFTTNGQDVPEDVSAFKIKEFIDDVFG--DWKDE 365


>gi|91223560|ref|ZP_01258825.1| flagellar biosynthesis regulator FlhF [Vibrio alginolyticus 12G01]
 gi|91191646|gb|EAS77910.1| flagellar biosynthesis regulator FlhF [Vibrio alginolyticus 12G01]
          Length = 505

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 106/255 (41%), Gaps = 22/255 (8%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELI-----HKMLMPLSKPFNW---DFSHRPHVILVV 117
           +++ L     + +++ Q   Y   +         +L  ++   N    D   R  V+ ++
Sbjct: 239 LIKRLERMGVSPELADQMACYIPEDTKPARAWKALLSLVADQINIPKQDILKRGGVVALL 298

Query: 118 GVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  
Sbjct: 299 GPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDS 358

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           ++ A + Y+       +   ++++DTAG    +  L   +  +++     +         
Sbjct: 359 NELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEVIHSYL 407

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VL AT  +  L++          +G IMTK+D +   G  I +V+ + +PV ++  G+ +
Sbjct: 408 VLPATAQRRVLQETLDHFRRIPLSGCIMTKLDESLSLGEFISVVIQNAMPVAYIANGQRV 467

Query: 296 N-DLEPFVAKDFSAV 309
             D+     K   A 
Sbjct: 468 PEDIVIAQPKYMLAK 482


>gi|6952811|gb|AAF32412.1| flagellar biosynthesis protein FlhF [Vibrio parahaemolyticus]
          Length = 503

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 106/255 (41%), Gaps = 22/255 (8%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELI-----HKMLMPLSKPFNW---DFSHRPHVILVV 117
           +++ L     + +++ Q   Y   +         +L  ++   N    D   R  V+ ++
Sbjct: 237 LIKRLERMGVSPELADQMACYIPEDTKPARAWKALLSLVADQINIPKQDILKRGGVVALL 296

Query: 118 GVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  
Sbjct: 297 GPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDS 356

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           ++ A + Y+       +   ++++DTAG    +  L   +  +++     +         
Sbjct: 357 NELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEVIHSYL 405

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VL AT  +  L++          +G I+TK+D +   G  I +V+ + +PV ++  G+ +
Sbjct: 406 VLPATAQRRVLQETLDHFRRIPLSGCILTKLDESLSLGEFISVVIQNAMPVAYIANGQRV 465

Query: 296 N-DLEPFVAKDFSAV 309
             D+     K   A 
Sbjct: 466 PEDIVIAQPKYMLAK 480


>gi|5912319|emb|CAB56102.1| cell division protein [Rickettsia sibirica]
          Length = 136

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/136 (42%), Positives = 90/136 (66%)

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++AY   +++  + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+
Sbjct: 1   PASVAYHGMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVI 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   QVE F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I D
Sbjct: 61  DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DF+  + G 
Sbjct: 121 LKIFNQHDFARNLVGL 136


>gi|319787085|ref|YP_004146560.1| flagellar biosynthetic protein FlhF [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465597|gb|ADV27329.1| flagellar biosynthetic protein FlhF [Pseudoxanthomonas suwonensis
           11-1]
          Length = 459

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 16/201 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+ +         + L   DT R    +QL  +  +      
Sbjct: 252 VIALVGPTGAGKTTTIAKLAARFVAEHGPRDIALVTTDTHRIGGREQLYGYGRQLGIAVH 311

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++  +   +L        + +   ++++DTAG    +  L + +  +            
Sbjct: 312 EADSDAALVSLLQ------RLQDYRLVLVDTAGLGQRDRALASQLNWLRAARN------- 358

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            S L VL A      L +V      A   G+++TK+D T R G  + +VV H++P+ ++ 
Sbjct: 359 VSTLLVLPANQHYADLDEVVRRFESARPQGVVLTKVDETGRLGSALSVVVDHQLPLTWMT 418

Query: 291 VGEGIN-DLEPFVAKDFSAVI 310
            G+ +  DL    A      +
Sbjct: 419 DGQRVPEDLHRANAASLVLRL 439


>gi|5912315|emb|CAB56097.1| cell division protein [Rickettsia rickettsii]
          Length = 136

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/136 (43%), Positives = 90/136 (66%)

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++AY   +++  + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+
Sbjct: 1   PASVAYRGMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVI 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   QVE F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I D
Sbjct: 61  DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DF+  I G 
Sbjct: 121 LKIFNQHDFARNIVGL 136


>gi|209522289|ref|ZP_03270917.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia sp. H160]
 gi|209497283|gb|EDZ97510.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia sp. H160]
          Length = 338

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 113/284 (39%), Gaps = 25/284 (8%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            +S    ++E    ++   R+  +  R  L   L  +     + Q +++ L       D 
Sbjct: 21  LSSMRDMMEEHFAGLLWGDRQRRNPARAALTKHLFAAGFSAQLVQMMIDNLPEDIETMDG 80

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137
            +      V  ++   L  +          R  V  ++G  GVGKTT   KL+ +  M  
Sbjct: 81  GMDW----VRSVLASNLPVMEDE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMRF 134

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV L   D++R    +QL+I+           +        A      ++ +   ++
Sbjct: 135 GASKVALLTTDSYRIGGHEQLRIFGKILGVSVHAVKDS------ADLQLALSELRNKHIV 188

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDT G    + ++   I  + R         P   L +L+AT+  + L +V   +  A 
Sbjct: 189 LIDTIGMSQRDRLVSDQIAMLCRA------GQPVQRLLLLNATSHGDTLNEVVQAYQRAP 242

Query: 258 ----TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                 G I+TK+D     GG++  V+ +K+PV+++  G+ + +
Sbjct: 243 DQQPLAGCILTKIDEATNLGGVLDTVIRYKLPVHYVSTGQKVPE 286


>gi|323493325|ref|ZP_08098448.1| flagellar biosynthesis regulator FlhF [Vibrio brasiliensis LMG
           20546]
 gi|323312411|gb|EGA65552.1| flagellar biosynthesis regulator FlhF [Vibrio brasiliensis LMG
           20546]
          Length = 492

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/267 (22%), Positives = 113/267 (42%), Gaps = 19/267 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + V+  + ++L      +D    +    +  L+   + P+SK    
Sbjct: 219 REPLRAMLIKRLERMGVSSDLADQLACY-IPEDTPPTKAWKALLGLVSDQI-PISKQ--- 273

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L + DT+R  A +QL I+  
Sbjct: 274 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEYGSDNVALVSTDTYRIGAHEQLAIYGR 333

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++   + A + Y+       +   ++++DTAG    +  L   +  ++    
Sbjct: 334 IMGCPVKVAKDSKELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLM---- 383

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             +         VL AT  +  L++          +G IMTK+D +   G  + + V + 
Sbjct: 384 -HESGEMIHSYLVLPATAQRKVLQETIDHFKRIPLSGCIMTKLDESLSLGEFVSVTVQNS 442

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +PV ++  G+ +  D+     K   A 
Sbjct: 443 LPVAYIANGQRVPEDIVIAQPKYMVAK 469


>gi|254506956|ref|ZP_05119095.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus 16]
 gi|219550241|gb|EED27227.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus 16]
          Length = 493

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 113/267 (42%), Gaps = 19/267 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + V+  + ++L      +D    +    +  L+   + P+SK    
Sbjct: 220 REPLRAMLIKRLERMGVSSDLADQLACY-IPEDTPPTKAWKALLGLVSDQI-PISKQ--- 274

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 275 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEWGADNVALVTTDTYRIGAHEQLAIYGR 334

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++   + A + Y+       +   ++++DTAG    +  L   +  ++    
Sbjct: 335 IMGCAVKVAKDSKELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLM---- 384

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             +         VL AT  +  L++          +G IMTK+D +   G  + +VV + 
Sbjct: 385 -HESGEMIHSYLVLPATAQRKVLQETIDHFKRIPLSGCIMTKLDESLSLGEFVSVVVQNA 443

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +PV ++  G+ +  D+     K   A 
Sbjct: 444 LPVAYIANGQRVPEDIVIAQPKYMVAK 470


>gi|5912323|emb|CAB56078.1| cell division protein [Rickettsia montanensis]
          Length = 136

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/136 (42%), Positives = 90/136 (66%)

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++AY   +++  + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+
Sbjct: 1   PASVAYRGMEESMKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDENAPTHSVLVI 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   QVE F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I D
Sbjct: 61  DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DF+  + G 
Sbjct: 121 LKIFNRHDFARNLVGL 136


>gi|190574222|ref|YP_001972067.1| flagellar biosynthesis regulator FlhF [Stenotrophomonas maltophilia
           K279a]
 gi|190012144|emb|CAQ45767.1| putative flagellar biosynthesis protein FlhF [Stenotrophomonas
           maltophilia K279a]
          Length = 540

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 16/201 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G GKTT I KL+ +     A   V L   DT R  A +QL  +  +      
Sbjct: 333 VIALVGPTGAGKTTTIAKLASRFAEKHAPRDVALVTTDTTRIGAREQLYGYGRQLGIAVH 392

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +  G+D   L        + K   +++IDTAG    +  L A +  +    +       
Sbjct: 393 EANSGTDLDQLLE------RLKDYKLVLIDTAGLGPRDRALAAQLQWLRAARQ------- 439

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VL A T    + +V      A   GL+++K+D T R G  + + V H +P+ ++ 
Sbjct: 440 VRTLLVLPANTSFGDMDEVVRRFGAANLQGLVLSKLDETGRFGNALSVAVDHALPINWVT 499

Query: 291 VGEGIN-DLEPFVAKDFSAVI 310
            G+ +  DL    A +    +
Sbjct: 500 DGQDVPEDLHRASAANLVLRL 520


>gi|153836967|ref|ZP_01989634.1| flagellar biosynthesis protein FlhF [Vibrio parahaemolyticus
           AQ3810]
 gi|161511052|ref|NP_798613.2| flagellar biosynthesis regulator FlhF [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365246|ref|ZP_05777803.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus K5030]
 gi|260878796|ref|ZP_05891151.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus
           AN-5034]
 gi|260897391|ref|ZP_05905887.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus
           Peru-466]
 gi|149749740|gb|EDM60485.1| flagellar biosynthesis protein FlhF [Vibrio parahaemolyticus
           AQ3810]
 gi|308088246|gb|EFO37941.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus
           Peru-466]
 gi|308094264|gb|EFO43959.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus
           AN-5034]
 gi|308115462|gb|EFO53002.1| flagellar biosynthetic protein FlhF [Vibrio parahaemolyticus K5030]
 gi|328474455|gb|EGF45260.1| flagellar biosynthesis regulator FlhF [Vibrio parahaemolyticus
           10329]
          Length = 503

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 106/255 (41%), Gaps = 22/255 (8%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELI-----HKMLMPLSKPFNW---DFSHRPHVILVV 117
           +++ L     + +++ Q   Y   +         +L  ++   N    D   R  V+ ++
Sbjct: 237 LIKRLERMGVSPELADQMACYIPEDTKPARAWKALLSLVADQINIPKQDILKRGGVVALL 296

Query: 118 GVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  
Sbjct: 297 GPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDS 356

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           ++ A + Y+       +   ++++DTAG    +  L   +  +++     +         
Sbjct: 357 NELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEVIHSYL 405

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VL AT  +  L++          +G I+TK+D +   G  I +V+ + +PV ++  G+ +
Sbjct: 406 VLPATAQRRVLQETLDHFRRIPLSGCILTKLDESLSLGEFISVVIQNAMPVAYIANGQRV 465

Query: 296 N-DLEPFVAKDFSAV 309
             D+     K   A 
Sbjct: 466 PEDIVIAQPKYMLAK 480


>gi|104782803|ref|YP_609301.1| flagellar biosynthesis regulator FlhF [Pseudomonas entomophila L48]
 gi|95111790|emb|CAK16514.1| flagellar biosynthetic protein FlhF [Pseudomonas entomophila L48]
          Length = 436

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 16/188 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D++R  A +QLK      +    
Sbjct: 218 VIAMVGPAGMGKTTTLAKLAARYVLKYGANNLALVSMDSYRIGAQEQLKTLGRILNVPV- 276

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHA 229
                 D      +A +    K+  V++IDTAG   ++  L   +  +  R +   +   
Sbjct: 277 ---TYVDPGESLAQALEPLLRKR--VVLIDTAGLQASDPALRMQLETLAGRGIAAKN--- 328

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L
Sbjct: 329 ----YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETACLGEVLSLAISHELPVAYL 384

Query: 290 GVGEGIND 297
             G  I D
Sbjct: 385 TDGPRIPD 392


>gi|312882108|ref|ZP_07741858.1| flagellar biosynthesis regulator FlhF [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370244|gb|EFP97746.1| flagellar biosynthesis regulator FlhF [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 478

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 117/267 (43%), Gaps = 19/267 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + V+  + ++L      +D +  +    +  L+   + P++K    
Sbjct: 205 REPLRAMLIKRLERMGVSSDLADQLACY-IPEDTAPTKAWRALLGLVSDQI-PIAKQ--- 259

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L + DT+R  A +QL I+  
Sbjct: 260 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEFGSDNVALVSTDTYRIGAHEQLSIYGR 319

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++  S+ A + Y+       +   ++++DTAG    +  L   +  +++   
Sbjct: 320 IMGCPVKVAKDSSELADVIYQ------LRNRRLVLVDTAGMGQRDVRLSEQLDTLMQ--- 370

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             +         VL AT  +  L++          +G IMTK+D +   G  + +VV + 
Sbjct: 371 --ESGEIIHSYLVLPATAQRKVLQETIEHFKRIPLSGCIMTKLDESLSLGEFVSVVVQNS 428

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +PV ++  G+ +  D+     K   A 
Sbjct: 429 LPVAYIANGQRVPEDIVIAKPKYMVAK 455


>gi|262393603|ref|YP_003285457.1| flagellar biosynthesis protein FlhF [Vibrio sp. Ex25]
 gi|262337197|gb|ACY50992.1| flagellar biosynthesis protein FlhF [Vibrio sp. Ex25]
          Length = 505

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 106/255 (41%), Gaps = 22/255 (8%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELI-----HKMLMPLSKPFNW---DFSHRPHVILVV 117
           +++ L     + +++ Q   Y   +         +L  ++   N    D   R  V+ ++
Sbjct: 239 LIKRLERMGVSPELADQMACYIPEDTKPARAWKALLSLVADQINIPKQDILKRGGVVALL 298

Query: 118 GVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  
Sbjct: 299 GPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDS 358

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           ++ A + Y+       +   ++++DTAG    +  L   +  +++     +         
Sbjct: 359 NELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEVIHSYL 407

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VL AT  +  L++          +G IMTK+D +   G  I +V+ + +PV ++  G+ +
Sbjct: 408 VLPATAQRRVLQETLDHFRRIPLSGCIMTKLDESLSLGEFISVVIQNAMPVAYIANGQRV 467

Query: 296 N-DLEPFVAKDFSAV 309
             D+     K   A 
Sbjct: 468 PEDIVIAQPKYMLAK 482


>gi|62241192|dbj|BAD93654.1| putative GTP-binding protein [Vibrio alginolyticus]
          Length = 505

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 106/255 (41%), Gaps = 22/255 (8%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELI-----HKMLMPLSKPFNW---DFSHRPHVILVV 117
           +++ L     + +++ Q   Y   +         +L  ++   N    D   R  V+ ++
Sbjct: 239 LIKRLERMGVSPELADQMACYIPEDTKPARAWKALLSLVADQINIPKQDILKRGGVVALL 298

Query: 118 GVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++  
Sbjct: 299 GPTGVGKTTTVAKLAARAAMEYGADNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDS 358

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           ++ A + Y+       +   ++++DTAG    +  L   +  +++     +         
Sbjct: 359 NELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEVIHSYL 407

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VL AT  +  L++          +G IMTK+D +   G  I +V+ + +PV ++  G+ +
Sbjct: 408 VLPATAQRRVLQETLDHFRRIPLSGCIMTKLDESLSLGEFISVVIQNAMPVAYIANGQRV 467

Query: 296 N-DLEPFVAKDFSAV 309
             D+     K   A 
Sbjct: 468 PEDIVIAQPKYMLAK 482


>gi|148704788|gb|EDL36735.1| signal recognition particle 54, isoform CRA_a [Mus musculus]
          Length = 325

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 6/153 (3%)

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
               A  + +    D   +A E  ++ + +  +++I+DT+GR      L   + ++   +
Sbjct: 35  RPCGATALVAYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSNAI 94

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           +      P +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   
Sbjct: 95  Q------PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAAT 148

Query: 283 KIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           K P+ F+G GE I+D EPF  + F + + G  D
Sbjct: 149 KSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 181


>gi|163801860|ref|ZP_02195757.1| flagellar biosynthesis protein [Vibrio sp. AND4]
 gi|159174368|gb|EDP59172.1| flagellar biosynthesis protein [Vibrio sp. AND4]
          Length = 503

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 124/313 (39%), Gaps = 38/313 (12%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
            ES + +  + +   S    L+  ++ +         + +E+E           +   ++
Sbjct: 195 EESANELENMREEMTSIRRLLEHQVSGL---------MWQEVERR-------EPLRAMLI 238

Query: 68  EELLTKRYAKDVSVQRVLYDVSELI-----HKMLMPLSKPFNW---DFSHRPHVILVVGV 119
           + L     + +++ Q   Y   +         +L+ ++   +    D   R  V+ ++G 
Sbjct: 239 KRLERMGVSPELADQMACYIPEDTKPARAWKALLLLVADQISIPKQDILKRGGVVALLGP 298

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT + KL+ +  M      V L   DT+R  A +QL I+          ++   +
Sbjct: 299 TGVGKTTTVAKLAARAAMEFGADNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSDE 358

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A + Y+       +   ++++DTAG    +  L   +  +++     +         VL
Sbjct: 359 LADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLMQ-----ESGEVIHSYLVL 407

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN- 296
            AT  +  L++          +G I+TK+D +   G  I +V+ + +PV ++  G+ +  
Sbjct: 408 PATAQRRVLQETLDHFRRIPLSGCILTKLDESLSLGEFISVVIQNAMPVAYIANGQRVPE 467

Query: 297 DLEPFVAKDFSAV 309
           D+     K   A 
Sbjct: 468 DIVIAQPKYMIAK 480


>gi|68171945|ref|ZP_00545258.1| GTP-binding signal recognition particle SRP54, G-domain:Signal
           peptide binding (SRP54) M-domain [Ehrlichia chaffeensis
           str. Sapulpa]
 gi|67998635|gb|EAM85375.1| GTP-binding signal recognition particle SRP54, G-domain:Signal
           peptide binding (SRP54) M-domain [Ehrlichia chaffeensis
           str. Sapulpa]
          Length = 290

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 6/145 (4%)

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                     +   A   AQ    DVLI+DTAGRLH + ++M  +  +       D  +P
Sbjct: 1   PIIENQAPIDIVKRAMDNAQQANCDVLILDTAGRLHVDQVMMEELRAIK------DLTSP 54

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             V+ V+D+  GQ+A+   + F+   G TG+I+T++DG +RGG  + + ++   P+ F+ 
Sbjct: 55  SEVILVVDSMIGQDAINVAKSFNDNIGITGIILTRIDGDSRGGAALSMKMSVGSPIKFIA 114

Query: 291 VGEGINDLEPFVAKDFSAVITGCLD 315
            GE ++DL+ F  +  +  I    D
Sbjct: 115 NGEKLSDLDDFYPERIAKRILNMGD 139


>gi|5912310|emb|CAB56107.1| cell division protein [Rickettsia typhi]
          Length = 136

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 61/136 (44%), Positives = 92/136 (67%)

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++AY A +++  + +D+L IDTAGRLHNN  LM  + K+++V+K+LD +AP   + ++
Sbjct: 1   PASVAYRAIQESIKQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSILII 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   Q+E F+ V   TGLI+TK+DG+A+ G L+  V    +P+YF+G+GE I D
Sbjct: 61  DAVTGQNTYNQIEYFNDVTNLTGLIITKLDGSAKAGVLVGAVQKFNLPIYFIGIGEQIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DFS  + G 
Sbjct: 121 LKIFNRHDFSRSLVGL 136


>gi|308173603|ref|YP_003920308.1| GTPase [Bacillus amyloliquefaciens DSM 7]
 gi|307606467|emb|CBI42838.1| GTPase involved in the export of flagella [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553465|gb|AEB23957.1| flagellar biosynthesis regulator FlhF [Bacillus amyloliquefaciens
           TA208]
 gi|328911744|gb|AEB63340.1| GTPase involved in the export of flagella [Bacillus
           amyloliquefaciens LL3]
          Length = 363

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 17/248 (6%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + E L +   + D++ + V   + +L+ K L    +    +     +V+L  G  G GKT
Sbjct: 130 LSELLRSSIASGDLTDENVNSKLQDLLVKKLPSADRW--QEGIQSKYVVLF-GSTGAGKT 186

Query: 126 TVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T + KL+   M     K+     DT+R AA++QLK +A+   A          +     +
Sbjct: 187 TTLAKLAASSMLTEHKKIAFMTTDTYRIAAVEQLKTYAELLQAPL----EVCYSKEECLK 242

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A ++      D + IDTAGR       +  + +MI     L          VL A+    
Sbjct: 243 AQEKFAE--YDHVFIDTAGRNFKEEQYITELQEMIPFDSGLQS------FLVLSASAKYE 294

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVA 303
            ++QV    +       I TK D TA  G +  ++   +I   +L  G+ +  D+     
Sbjct: 295 DMKQVLKQFSGVPVNQFIFTKADETASLGSVFQLLSESRIGAAYLTNGQDVPEDILSVSP 354

Query: 304 KDFSAVIT 311
           K+F  ++ 
Sbjct: 355 KEFVRMLL 362


>gi|218778855|ref|YP_002430173.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760239|gb|ACL02705.1| Flagellar biosynthesis regulator FlhF (GTP-binding signal
           recognition particle SRP54 G- domain protein)
           [Desulfatibacillum alkenivorans AK-01]
          Length = 393

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 100/257 (38%), Gaps = 23/257 (8%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
            L+R+ I    A+  V++        D +          +++ +L   +     +     
Sbjct: 126 ALVRAGISTVHARDWVDQARASAPGGDPA-----RLFKAVMNLVLKGFNFSRPCEIKAGQ 180

Query: 112 HVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            V   VG  GVGKTT I KL+  +       V L + D +R  A +QLK +A        
Sbjct: 181 AVCAFVGPTGVGKTTTIAKLAADLHLTRKKNVGLLSIDNYRIGAAEQLKTYASILGLP-- 238

Query: 171 CSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                    A   +  + A  +    DV++IDTAG+   ++  M  +  +       D  
Sbjct: 239 ------CLQAFNQKDLQYALGRLADKDVVLIDTAGQSQYDTQRMREMEAL------FDGE 286

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
               +  VL A T ++ + +          +  + TK D T + G ++  V+   +PV F
Sbjct: 287 RRIDIHLVLSAVTCESEMEETAKRFGGLDFSSYVFTKTDETKKRGAIVNQVLKRPMPVSF 346

Query: 289 LGVGEGINDLEPFVAKD 305
           +  G+ + + + F A  
Sbjct: 347 ISTGQRVPE-DFFRADR 362


>gi|186477708|ref|YP_001859178.1| flagellar biosynthesis regulator FlhF [Burkholderia phymatum
           STM815]
 gi|184194167|gb|ACC72132.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia phymatum STM815]
          Length = 644

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 98/255 (38%), Gaps = 25/255 (9%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +++ L              +  V E    ++            
Sbjct: 357 LTRHLFAAGFSAQLVKMVIDNLPE--VDGMDEGMEWVRTVLESNVPVMENED-----ALM 409

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 410 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 469

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +        A      ++ +   +++IDT G    + ++   I  + R      
Sbjct: 470 VSVHAVKDS------ADLTLALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLCRA----- 518

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG----TTGLIMTKMDGTARGGGLIPIVVTH 282
              P   L +L+AT+  + L +V   +  A       G I+TK+D     G ++  V+ +
Sbjct: 519 -GQPVQRLLLLNATSHGDTLNEVVQAYQNAPDQQPLAGCILTKLDEATNLGSVLDTVIRY 577

Query: 283 KIPVYFLGVGEGIND 297
           K+PV++   G+ + +
Sbjct: 578 KLPVHYASTGQKVPE 592


>gi|323499561|ref|ZP_08104531.1| flagellar biosynthesis regulator FlhF [Vibrio sinaloensis DSM
           21326]
 gi|323315434|gb|EGA68475.1| flagellar biosynthesis regulator FlhF [Vibrio sinaloensis DSM
           21326]
          Length = 492

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 113/267 (42%), Gaps = 19/267 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + V+  + ++L      +D    +    +  L+   + P+SK    
Sbjct: 219 REPLRAMLIKRLERMGVSSDLADQLACY-IPEDTPPTKAWKALLGLVSDQI-PISKQ--- 273

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 274 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEWGADNVALVTTDTYRIGAHEQLAIYGR 333

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++   + A + Y+       +   ++++DTAG    +  L   +  ++    
Sbjct: 334 IMGCAVKVAKDSKELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLM---- 383

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             +         VL AT  +  L++          +G IMTK+D +   G  + +VV + 
Sbjct: 384 -HESGEMIHSYLVLPATAQRKVLQETIDHFKRIPLSGCIMTKLDESLSLGEFVSVVVQNA 442

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +PV ++  G+ +  D+     K   A 
Sbjct: 443 LPVAYIANGQRVPEDIVIAQPKYMVAK 469


>gi|260776435|ref|ZP_05885330.1| flagellar biosynthesis protein FlhF [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607658|gb|EEX33923.1| flagellar biosynthesis protein FlhF [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 493

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 60/267 (22%), Positives = 114/267 (42%), Gaps = 19/267 (7%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           RE L  +LI+    + V+ ++ ++L      +D    +    +  L+   + P+SK    
Sbjct: 220 REPLRAMLIKRLERMGVSAELADQLACY-IPEDTPPTKAWKALLGLVSDQI-PISKQ--- 274

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V+ ++G  GVGKTT + KL+ +  M      V L   DT+R  A +QL I+  
Sbjct: 275 DILKRGGVVALLGPTGVGKTTTVAKLAARAAMEFGSDNVALVTTDTYRIGAHEQLSIYGR 334

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   ++   + A + Y+       +   ++++DTAG    +  L   +  ++    
Sbjct: 335 IMGCAVKVAKDSKELADVIYQ------LRNRRLILVDTAGMGQRDVRLSEQLDTLM---- 384

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             +         VL AT  +  L++          +G I+TK+D +   G  + +VV + 
Sbjct: 385 -HESGEVIHSYLVLPATAQRKVLQETIDHFKRIPLSGCILTKLDESLSLGEFVSVVVQNS 443

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +PV ++  G+ +  D+     K   A 
Sbjct: 444 LPVAYIANGQRVPEDIVIAQPKYMVAK 470


>gi|73539439|ref|YP_299806.1| flagellar biosynthesis protein [Ralstonia eutropha JMP134]
 gi|72122776|gb|AAZ64962.1| GTP-binding signal recognition particle SRP54, G-domain [Ralstonia
           eutropha JMP134]
          Length = 804

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 20/193 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT   KL+ +        ++ L   D+FR  A +QL+I+ D       
Sbjct: 177 VLALIGPTGVGKTTTTAKLAARYVLRHGPERLALLTTDSFRIGAHEQLRIYGDILGVPVH 236

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +        A   F  A  K   ++IIDT G    +  L   I  +  V       AP
Sbjct: 237 AVKDA------ADLRFALAAMKDKHLVIIDTVGMSQRDRNLSEQIAMLAGV------QAP 284

Query: 231 HSVLQVLDATTGQNALRQVEMFH------AVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
              + +L+  +  + L +V   +         G  G I++K+D     G ++ +V+ H++
Sbjct: 285 VQRVLLLNGASHGDTLNEVVHAYRHDAVPEGGGVDGCIISKLDEATHLGSVLDVVIRHRL 344

Query: 285 PVYFLGVGEGIND 297
           PV+++  G+ + +
Sbjct: 345 PVFYVSTGQRVPE 357


>gi|225849141|ref|YP_002729305.1| flagellar biosynthetic protein FlhF [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644292|gb|ACN99342.1| flagellar biosynthetic protein FlhF [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 385

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 123/289 (42%), Gaps = 20/289 (6%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E IT   S + +D      L ++L + ++ + +A+++V+       + +    R      
Sbjct: 114 EEITKEFSGKAID------LINILTQKEVSLDIAKEVVKGGCGLELSSNKLDLRHFTFRE 167

Query: 90  ELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAG 147
            LI  +   +  K   ++   R  V++ +G  GVGKTT + K++  +  +   KV + + 
Sbjct: 168 SLIEGLNSKVDFKGDIFENLTRQKVLVFLGPTGVGKTTNLFKIASNLVLNKNKKVAVLSI 227

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DTF++ A DQ + +++     F              +         VDV+++DT GR H 
Sbjct: 228 DTFKAGAADQARSYSNILGIPFYLLSDPKKIRETVDD------LNFVDVILVDTIGRSHY 281

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +      +G+M   L+ LD      VL        + +   ++ +        L  TK+D
Sbjct: 282 D---HWKLGEMKETLRFLDEAQYMMVL--SANMNTKESFNIIKKYQKFFKIDYLFFTKID 336

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLD 315
            T+  G ++ + V   IP+ ++  G+ +  D++    +   +++    D
Sbjct: 337 ETSYPGVILNLTVKTGIPLTYISTGQNVPEDIKVLTPERLVSLLLKETD 385


>gi|126664992|ref|ZP_01735975.1| Flagellar GTP-binding protein [Marinobacter sp. ELB17]
 gi|126630362|gb|EBA00977.1| Flagellar GTP-binding protein [Marinobacter sp. ELB17]
          Length = 453

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 25/258 (9%)

Query: 59  GVAVA---QKIVEELLTKRYAKDVSVQRVLYDVSELIH-------KMLMPLSKPFNWDFS 108
           G  V    Q++ E L     ++++S    L   +  +        KML+   +    ++ 
Sbjct: 184 GANVTALQQRLAERLGEFGLSRELSDNLALRHQAGRLEDGWKQSLKMLVNGVRTPRQEWL 243

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               V  +VG  G GKTT IGKL+ +         + L   D +R AA +QL ++    +
Sbjct: 244 DEGGVFALVGPTGAGKTTTIGKLAARYVLRHGADSLALITTDRYRVAAHEQLFVFGRILN 303

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +       +  E           +++IDTAG    +      + ++ R   ++ 
Sbjct: 304 VPVRVVDESHPLDEILDE------LSDRRLVLIDTAGLTSTDRGYQEQLAELARSHHKI- 356

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    V+ AT+    ++ V   + +A   G ++TK+D     G  +  V+   +PV
Sbjct: 357 -----RTHLVVSATSQPRIMKSVWHCYKMANLAGCVITKIDEALTLGEALGFVMETSLPV 411

Query: 287 YFLGVGEGIN-DLEPFVA 303
            +   G+ I  DL P  A
Sbjct: 412 AWYTDGQKIPQDLHPAKA 429


>gi|261855328|ref|YP_003262611.1| flagellar biosynthetic protein FlhF [Halothiobacillus neapolitanus
           c2]
 gi|261835797|gb|ACX95564.1| flagellar biosynthetic protein FlhF [Halothiobacillus neapolitanus
           c2]
          Length = 485

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 16/231 (6%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           L K+ A+D + Q     +S  +  +   +S P    F     +   +G  GVGKTT + K
Sbjct: 229 LAKKLAQDAARQEPDRALSAALKSLGENISAPAQSAFMQG-GMFAFIGPTGVGKTTTLAK 287

Query: 131 LSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           ++ +  ++     V L   D FR  A +QL+ +A   +     +      A L   A   
Sbjct: 288 IAAQAVLAHGRDSVALITTDRFRIGAQEQLRNYARILNIPLHVARDEQHLAELLP-AVSS 346

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +     +++IDTAG    +  +M  + K+  + +RL+      VL VL A    +A+  
Sbjct: 347 KR-----LVLIDTAGMSPRDMHMMDALKKLPVINERLN------VLLVLSAQAQYSAMTD 395

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DL 298
                 V    G+I+TK+D T   G  +  ++  ++P+   GVG+ +  DL
Sbjct: 396 AINRFQVLPLAGMILTKLDETILLGSALAALIHGRLPLVCTGVGQRVPEDL 446


>gi|149182525|ref|ZP_01860998.1| flagellar biosynthesis regulator FlhF [Bacillus sp. SG-1]
 gi|148849785|gb|EDL63962.1| flagellar biosynthesis regulator FlhF [Bacillus sp. SG-1]
          Length = 384

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 121/304 (39%), Gaps = 33/304 (10%)

Query: 23  STSLKLKEGITD---IISSRRLDDGVR---EELEDLLI-----RSDIGV--AVAQKIVEE 69
           ++SL+ K+ IT+   I+   + ++G     E++  LL+       D       A+ +V  
Sbjct: 94  NSSLQFKKEITELKSIVQQLKSNNGFEHYPEDIRHLLLYLKEQEIDENYILEAAEHLV-S 152

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L   + +  ++   +   VS+ +   L  LS           +VI   G  GVGKTT + 
Sbjct: 153 LRESKDS--LTASELKSTVSDFMKNKLETLSFGGTSYKKKYVNVI---GPTGVGKTTTLA 207

Query: 130 KLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           K++ +   +   K+     DT+R AAI+QLK +A   +          D       A ++
Sbjct: 208 KMAYEAVLERRKKIAFITTDTYRIAAIEQLKTYAQLLNVPLEVVYKLEDFQK----AIEK 263

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
            +    D++ IDTAGR             +  + K +D         VL  T  +  L Q
Sbjct: 264 FKD--YDMVFIDTAGRNFREE------KYVKDLEKMIDFKNDMETFLVLSMTAKERDLNQ 315

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFS 307
           +    +       I +K+D T+  G +  I+   +    ++  G+ +  D+     K   
Sbjct: 316 IIHNFSTVPIEKFIFSKVDETSSYGTMYNILRNEEKGAAYITAGQSVPEDISEASPKGIV 375

Query: 308 AVIT 311
            ++ 
Sbjct: 376 DLVM 379


>gi|207725000|ref|YP_002255397.1| cell division protein [Ralstonia solanacearum MolK2]
 gi|206590227|emb|CAQ37188.1| cell division protein [Ralstonia solanacearum MolK2]
          Length = 317

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 114/277 (41%), Gaps = 22/277 (7%)

Query: 24  TSLKLKEGITDIIS-SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
               L + ++ + S   +L D VR  L   ++ +     + + +++ +         +  
Sbjct: 8   LKSTLTDAMSSLASLGVKLGDPVRTRLFQTMLNAGFSAQLTRYVLDNMPQHG-----TYD 62

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGL 140
             L  V   + K L  +  P       +  V  ++G  GVGKTT   KL+ +  +     
Sbjct: 63  SALDFVQRALEKNLTVV--PDENSLLDQGGVFALMGPTGVGKTTTTAKLAARFVLRHGAS 120

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           +V L + D++R    +QL+I+           +   D       +      ++  V++ID
Sbjct: 121 RVALLSTDSYRIGGHEQLRIYGKILGVTVHAVKDAQDL------SLALGDLREKHVVLID 174

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           T G    +  +   +  +  V   +        L +L++T+    L +V   +  A   G
Sbjct: 175 TIGMSQRDRAVSEQMAMLHAVGPSI------KRLLLLNSTSNGKTLDEVVSAYRDANLAG 228

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            I+TK+D  A  G  + +++ +++P++++  G+ + +
Sbjct: 229 CILTKIDEAASVGHAMDVMIRNRLPLHYVSYGQRVPE 265


>gi|307824494|ref|ZP_07654719.1| flagellar biosynthetic protein FlhF [Methylobacter tundripaludum
           SV96]
 gi|307734478|gb|EFO05330.1| flagellar biosynthetic protein FlhF [Methylobacter tundripaludum
           SV96]
          Length = 475

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 122/301 (40%), Gaps = 26/301 (8%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIG 59
           +  +K +S + + + +++K   S    +   ++ +   +    + VR +L   L     G
Sbjct: 159 IPPEKQSSPADNLLLEMSKELKSLRSAMDSKLSSVSWGAASQTNPVRADLLQRL----AG 214

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +++++K+  ++  + +      + V     EL+ K+L         D      +  +VG 
Sbjct: 215 MSISRKLSVKIANR-FTNHTDPELVFSQAQELLAKVLP----VAGDDLLQHGGIAALVGP 269

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGS 176
            GVGKTT I KL+ K  +     +V L   D +R  A +QL  +         V S    
Sbjct: 270 TGVGKTTTIAKLAAKFILKHGPRQVALITTDNYRIGAHEQLNTYGRILDVPVRVASSAAE 329

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
               +   + K+       +++IDTAG    +  L+  I  + +               V
Sbjct: 330 LRNLINGFSDKR-------LILIDTAGMSQRDMKLVEQINTLQQ------SGIDIKSYLV 376

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           + A T   A+ ++     V      I+TK+D  A  G  +  ++ + +P+ F+  G+ + 
Sbjct: 377 MSAATEYKAMNEIIKAFQVFEPQASILTKLDEAATIGSAVSSIIENNLPLSFIADGQQVP 436

Query: 297 D 297
           +
Sbjct: 437 E 437


>gi|188592107|ref|YP_001796705.1| flagellar biosynthesis regulator flhf [Cupriavidus taiwanensis LMG
           19424]
 gi|170938481|emb|CAP63468.1| Putative flagellar biosynthesis protein, flagella-associated
           GTP-binding protein; GTP-binding SRP family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 779

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 21/206 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ +VG  GVGKTT   KL+ +        K+ L   D+FR  A +QL+I+ D       
Sbjct: 177 VLALVGPTGVGKTTTTAKLAARYVLRHGADKLALLTTDSFRIGAHEQLRIYGDILGVPVH 236

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +        A   F  A  K   ++IIDT G    +  L   I  +  V     P   
Sbjct: 237 AVKDA------ADLRFALAAMKDKHLVIIDTVGMSQRDRSLSEQIAMLAGV-----PAPV 285

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVA------GTTGLIMTKMDGTARGGGLIPIVVTHKI 284
             VL  L+  +  + L +V   +         G  G I++K+D     G ++ +V+ H++
Sbjct: 286 QRVLL-LNGASHGDTLNEVVHAYRHDAAPDGGGIDGCIISKLDEATHLGSVLDVVIRHRL 344

Query: 285 PVYFLGVGEGIND-LEPFVAKDFSAV 309
           PV++   G+ + + LE   +      
Sbjct: 345 PVFYASTGQRVPEHLELANSTALVER 370


>gi|10175057|dbj|BAB06156.1| flagella-associated protein [Bacillus halodurans C-125]
          Length = 375

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 111/268 (41%), Gaps = 19/268 (7%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW----D 106
           + L + ++  AV  ++V+ LL   + ++   ++  +   EL+ K    L +  +      
Sbjct: 116 EQLKQQEVCEAVRLQLVKHLLQ-AWLQEEGDEQTPWSYEELLTKGEQLLKRKLSLLPEGG 174

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            + +   + +VG  GVGKTT I KL+   +     KV L   DT+R AA++QLK +A   
Sbjct: 175 ITFQKKFVNIVGPTGVGKTTTIAKLAAHSVLKKKKKVALITTDTYRIAAVEQLKTYAKIL 234

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +          D          + Q    D++++D+AGR   N++ +  + K+I      
Sbjct: 235 NIPLEVVYSMEDFQK------AKNQFIHYDLVLVDSAGRNFRNALYVKELEKVIDFKHEA 288

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                     VL  T     ++ +    ++     +I TK D T   G ++ ++      
Sbjct: 289 ------ENYLVLSLTGKYRDMKAIIEQFSLVPIKQIIFTKQDETDTYGAMLNMMFEQGKG 342

Query: 286 VYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           V ++  G+ + +D+           I G
Sbjct: 343 VAYVTNGQNVPDDIVESSNDWIIQTILG 370


>gi|116694209|ref|YP_728420.1| flagellar biosynthesis regulator FlhF [Ralstonia eutropha H16]
 gi|113528708|emb|CAJ95055.1| Flagellar GTP-binding protein [Ralstonia eutropha H16]
          Length = 776

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 21/206 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ +VG  GVGKTT   KL+ +  +     K+ L   D+FR  A +QL+I+ D       
Sbjct: 173 VLALVGPTGVGKTTTTAKLAARFVLRHGADKLALLTTDSFRIGAHEQLRIYGDILGVPVH 232

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +        A   F  A  K   ++IIDT G    +  L   I  +  V     P   
Sbjct: 233 AVKDA------ADLRFALAAMKDKHLVIIDTVGMSQRDRSLSEQIAMLAGV-----PAPV 281

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVA------GTTGLIMTKMDGTARGGGLIPIVVTHKI 284
             VL  L+  +  + L +V   +         G  G I++K+D     G ++ +V+ H++
Sbjct: 282 QRVLL-LNGASHGDTLNEVVHAYRHDAAPDGGGIDGCIISKLDEATHLGSVLDVVIRHRL 340

Query: 285 PVYFLGVGEGIND-LEPFVAKDFSAV 309
           PV++   G+ + + LE   +      
Sbjct: 341 PVFYASTGQRVPEHLELANSTALVER 366


>gi|5912301|emb|CAB56084.1| cell division protein [Rickettsia prowazekii]
 gi|5912305|emb|CAB56088.1| cell division protein [Rickettsia prowazekii]
          Length = 136

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/136 (45%), Positives = 92/136 (67%)

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++AY A +++  + +D+L IDTAGRLHNN  LM  + K+++V+K+LD +AP   + ++
Sbjct: 1   PASVAYRAIEESIKQNIDILFIDTAGRLHNNKNLMDELSKIVKVIKKLDENAPTHSILII 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   Q+E F+ V   TGLI+TK+DG+A+ G L+  V    +PVYF+G+GE I D
Sbjct: 61  DAITGQNTYNQIEYFNDVTNLTGLIVTKLDGSAKAGVLVGAVQKFNLPVYFIGIGEKIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DFS  + G 
Sbjct: 121 LKIFNRHDFSRSLVGL 136


>gi|309808797|ref|ZP_07702682.1| Signal peptide binding domain protein [Lactobacillus iners LactinV
           01V1-a]
 gi|308167923|gb|EFO70056.1| Signal peptide binding domain protein [Lactobacillus iners LactinV
           01V1-a]
          Length = 300

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 6/131 (4%)

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             QA     D +IIDTAGRL  +  LM  +  ++      D   P +++ V DA TGQ A
Sbjct: 1   MMQADRNHNDYVIIDTAGRLEIDDQLMDELKNIV------DVAHPENIILVADAMTGQVA 54

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
               E F++    TGLI+TK+DG  RGG  + I     +P+ F G GE + +L+ F    
Sbjct: 55  ATVAEGFNSKLKLTGLILTKLDGDTRGGAALSIREVTGLPILFTGQGEKLTELDTFHPDR 114

Query: 306 FSAVITGCLDY 316
            ++ I G  D 
Sbjct: 115 MASRILGMGDM 125


>gi|167721671|ref|ZP_02404907.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           DM98]
          Length = 367

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 43  LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGH 99

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 100 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 157

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 158 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 211

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 212 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 265

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 266 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 315


>gi|167904711|ref|ZP_02491916.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           NCTC 13177]
          Length = 391

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 67  LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGY 123

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 124 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 181

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 182 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 235

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 236 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 289

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 290 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 339


>gi|161936323|ref|YP_129150.2| flagellar biosynthesis regulator FlhF [Photobacterium profundum
           SS9]
          Length = 580

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 103/254 (40%), Gaps = 22/254 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL--------IHKMLMPLSKPFNWDFSHRPHVILVVG 118
           ++ L     + +++ Q   Y   ++        +  +L       N        V+ ++G
Sbjct: 308 IKRLEKMGLSSELADQFASYIPEDVPAHEAWPVLLDLLADQIITTNDCILETGGVVALLG 367

Query: 119 VNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
             GVGKTT I KL+ + +      ++ L   DT+R  A +QL  +          ++   
Sbjct: 368 PTGVGKTTTIAKLAARAAMDFGADEIALVTTDTYRIGAHEQLATYGRILGCPVRVAKDAE 427

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           + A + ++       +   ++++DTAG    +  L   +  +++     +  A      V
Sbjct: 428 ELADILHQ------LRHRRLVLLDTAGMGQRDIRLSEQLDTLMQ-----NSGAHIRSFLV 476

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           L +T  +  L++          +G ++TK+D +   G ++ + + + +P+ +L  G+ + 
Sbjct: 477 LPSTAQRRVLQETIEHFRRIPLSGCVLTKLDESLSLGEVMCVTIQNALPIAYLADGQRVP 536

Query: 297 -DLEPFVAKDFSAV 309
            D++        + 
Sbjct: 537 EDIKVATGNYLVSR 550


>gi|46912556|emb|CAG19348.1| hypothetical flagellar biosynthesis protein FlhF [Photobacterium
           profundum SS9]
          Length = 570

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 103/254 (40%), Gaps = 22/254 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL--------IHKMLMPLSKPFNWDFSHRPHVILVVG 118
           ++ L     + +++ Q   Y   ++        +  +L       N        V+ ++G
Sbjct: 298 IKRLEKMGLSSELADQFASYIPEDVPAHEAWPVLLDLLADQIITTNDCILETGGVVALLG 357

Query: 119 VNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
             GVGKTT I KL+ + +      ++ L   DT+R  A +QL  +          ++   
Sbjct: 358 PTGVGKTTTIAKLAARAAMDFGADEIALVTTDTYRIGAHEQLATYGRILGCPVRVAKDAE 417

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           + A + ++       +   ++++DTAG    +  L   +  +++     +  A      V
Sbjct: 418 ELADILHQ------LRHRRLVLLDTAGMGQRDIRLSEQLDTLMQ-----NSGAHIRSFLV 466

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           L +T  +  L++          +G ++TK+D +   G ++ + + + +P+ +L  G+ + 
Sbjct: 467 LPSTAQRRVLQETIEHFRRIPLSGCVLTKLDESLSLGEVMCVTIQNALPIAYLADGQRVP 526

Query: 297 -DLEPFVAKDFSAV 309
            D++        + 
Sbjct: 527 EDIKVATGNYLVSR 540


>gi|167912989|ref|ZP_02500080.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           112]
          Length = 386

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 62  LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGY 118

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 119 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 176

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 177 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 230

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 231 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 284

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 285 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 334


>gi|5912327|emb|CAB56092.1| cell division protein [Rickettsia rhipicephali]
          Length = 136

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/136 (42%), Positives = 90/136 (66%)

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++AY   +++  + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + V+
Sbjct: 1   PASVAYRGMEESIKQNIDILFIDTAGRLHNKKNLMDELSKIVKVIKKLDKNAPTHSVLVI 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   QVE F+     TGLI+TK+DG+A+ G ++ +V    +P+YF+G+GE I D
Sbjct: 61  DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPLYFIGIGEKIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DF+  + G 
Sbjct: 121 LKIFNRHDFAKNLVGL 136


>gi|53724310|ref|YP_104356.1| flagellar biosynthesis regulator FlhF [Burkholderia mallei ATCC
           23344]
 gi|67639809|ref|ZP_00438642.1| flagellar biosynthesis protein FlhF [Burkholderia mallei GB8 horse
           4]
 gi|121598247|ref|YP_994699.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei
           SAVP1]
 gi|124385699|ref|YP_001027677.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei
           NCTC 10229]
 gi|167002949|ref|ZP_02268739.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei
           PRL-20]
 gi|52427733|gb|AAU48326.1| flagellar biosynthetic protein FlhF, putative [Burkholderia mallei
           ATCC 23344]
 gi|121227057|gb|ABM49575.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei
           SAVP1]
 gi|238520419|gb|EEP83879.1| flagellar biosynthesis protein FlhF [Burkholderia mallei GB8 horse
           4]
 gi|243061440|gb|EES43626.1| putative flagellar biosynthetic protein FlhF [Burkholderia mallei
           PRL-20]
          Length = 374

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 50  LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGY 106

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 107 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 164

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 165 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 218

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 219 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 272

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 273 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322


>gi|167817861|ref|ZP_02449541.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           91]
          Length = 384

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 60  LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGY 116

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 117 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 174

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 175 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 228

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 229 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 282

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 283 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 332


>gi|330815161|ref|YP_004358866.1| FlhF [Burkholderia gladioli BSR3]
 gi|327367554|gb|AEA58910.1| FlhF [Burkholderia gladioli BSR3]
          Length = 594

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 102/254 (40%), Gaps = 21/254 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V++L       + S          ++   L  L         
Sbjct: 305 LTKRLFSAGFSAQLVRTVVDKLP--AELAEGSFDGACDWAESVLAGNLPVLDSE--DALM 360

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 361 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGRILG 420

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 + G D           ++ +   +++IDT G    +  +   I  +        
Sbjct: 421 VPVHAVKDGGDLQ------LALSELRNKHIVLIDTIGMSQRDRTVSDQIAML------QG 468

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG---TTGLIMTKMDGTARGGGLIPIVVTHK 283
              P   L +L+AT+  + L +V   +  AG     G I+TK+D     GG++  V+ ++
Sbjct: 469 ADTPVQRLLLLNATSHGDTLNEVVQAYRGAGQPDLAGCILTKLDEATNLGGVLDTVIRYQ 528

Query: 284 IPVYFLGVGEGIND 297
           +PV+++  G+ + +
Sbjct: 529 LPVHYVSTGQKVPE 542


>gi|167826239|ref|ZP_02457710.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei 9]
          Length = 369

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 45  LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGY 101

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 102 DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 159

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 160 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 213

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 214 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 267

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 268 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 317


>gi|257487159|ref|ZP_05641200.1| signal recognition particle protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 269

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAGRLH +  +M  I  +    K          L V+DA TGQ+A    + F      T
Sbjct: 1   DTAGRLHVDVEMMGEIQALHAATKPA------ETLFVVDAMTGQDAANTAKAFGDALPLT 54

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           G+I+TK+DG ARGG  + +      P+ F+G+GE    LEPF     ++ I G  D
Sbjct: 55  GVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSEALEPFHPDRIASRILGMGD 110


>gi|167896337|ref|ZP_02483739.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           7894]
          Length = 360

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L      +  
Sbjct: 36  LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPE---GEGH 92

Query: 80  SVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MS 136
                  D    ++   L  L          R  V  ++G  GVGKTT   KL+ +  M 
Sbjct: 93  DTLDAAADWAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMR 150

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               KV L   D++R    +QL+I+           + G D           A+ +   +
Sbjct: 151 FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHM 204

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A
Sbjct: 205 VLIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSA 258

Query: 257 ---------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                       G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 259 AGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 308


>gi|15639700|ref|NP_219150.1| flagellar-associated GTP-binding protein (flhF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025938|ref|YP_001933710.1| flagellar-associated GTP-binding protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|3913684|sp|Q56339|FLHF_TREPA RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|1216384|gb|AAB00551.1| flhF [Treponema pallidum]
 gi|3323015|gb|AAC65679.1| flagellar-associated GTP-binding protein (flhF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018513|gb|ACD71131.1| flagellar-associated GTP-binding protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060078|gb|ADD72813.1| flagellar biosynthetic protein FlhF [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 437

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 114/280 (40%), Gaps = 22/280 (7%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDF 107
           +E LL  +D   +  +K +  L  +    D+     +   V   I + +     P     
Sbjct: 158 IELLLEENDFSFSFIRKSIARLKDELSYHDLESFEKVESTVLRWIIESVHIQVPPICTGT 217

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-----SDAGL--KVMLAAGDTFRSAAIDQLKI 160
            +    I++VG  GVGKTT + KL+           G+  +V +   D FR  A  Q++ 
Sbjct: 218 RN----IVLVGPTGVGKTTTLAKLAAFYFVTEPKRTGIQPRVKIITTDNFRIGAAFQMER 273

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           + +    D    +       + +  +     ++ DV+ +DT GR   +   +  + +  R
Sbjct: 274 YCELMGLDLCVVQAP-----VEFLTYMTLYQQETDVVFVDTEGRSPVDGQNIERMVEYFR 328

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
            +K  +      V   +DA +  N LR+V   +A+     LI+TK+D T   G LI  + 
Sbjct: 329 AVKNFE----LEVYLTIDAGSKANDLREVFKQYALFEYRALIVTKLDETTSIGNLISALS 384

Query: 281 THKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLDYGEE 319
             + P+ ++  G+ +  +LE        + + G     EE
Sbjct: 385 EARTPITYITTGQTVPSNLEKASVNLLLSKLKGFKLLAEE 424


>gi|300871799|ref|YP_003786672.1| flagellar biosynthesis regulator FlhF [Brachyspira pilosicoli
           95/1000]
 gi|300689500|gb|ADK32171.1| flagellar biosynthesis regulator, FlhF [Brachyspira pilosicoli
           95/1000]
          Length = 606

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 116/299 (38%), Gaps = 36/299 (12%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
            S +  +++   + +  R   + V  EL + L+ S                     +   
Sbjct: 340 TSVTDSMEDSF-NFLRHREFPEEVLIELREYLLTS--------------------SNARF 378

Query: 82  QRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            +    + E I +     L      D   +  +++ VG  GVGKTT I K++ +   +G 
Sbjct: 379 FQSKDVIKEEIERYFSSRLLLANGIDIGSKKKIVVFVGPTGVGKTTTIPKIAAQYMRSGK 438

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           KV     D +R AA+DQL+ +A      F  +       A      +  +     +L ID
Sbjct: 439 KVSFVTIDNYRIAAVDQLQRYASIMKVPFTSASTPEALRA------EIRKLDSSSLLFID 492

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           T GR   +   +  + K    + R D      V  V+ +T       ++      A   G
Sbjct: 493 TMGRSPKSVEEIVSMSKYFNTVGRFD----MDVQLVMSSTAKYKDALKIMNAFKPANYKG 548

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFS-AVITGCLDYG 317
           +I+TK+D T      +  +   K+P+ ++  G+G+  D+ P  AK ++  +I G   Y 
Sbjct: 549 IILTKVDETDYLASSLCAISKSKVPITYVTYGQGVPKDIAP--AKRYAHKMIEGLFGYD 605


>gi|149376627|ref|ZP_01894387.1| Flagellar GTP-binding protein [Marinobacter algicola DG893]
 gi|149359145|gb|EDM47609.1| Flagellar GTP-binding protein [Marinobacter algicola DG893]
          Length = 431

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 100/256 (39%), Gaps = 24/256 (9%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
            V++ L + L    +G+ +A  +     ++R+            +     KML    K  
Sbjct: 169 AVQQRLSERLQEFGLGLELANSL-----SRRHRAGRLEDGWKQSL-----KMLAAGVKTA 218

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIW 161
             +++    V  +VG  G GKTT IGKL+           + L   D +R AA +QL ++
Sbjct: 219 RTEWADEGGVYALVGPTGSGKTTTIGKLAAHYVLRHGADSLALVTTDRYRVAAHEQLFVF 278

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
               +      +       +  E           +++IDTAG    +      + ++ R 
Sbjct: 279 GRILNVPVRVVDETHSLDDILDE------LSDRHLVLIDTAGLTSTDKGYEEQLMELARS 332

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
             R+          V+ AT+    ++ V   + +A  TG +MTK+D     G  +  V+ 
Sbjct: 333 HHRI------RTHLVVSATSQPRIMKSVWHCYKMANLTGCVMTKIDEALTLGESLGFVME 386

Query: 282 HKIPVYFLGVGEGIND 297
             +PV +   G+ I +
Sbjct: 387 TGLPVAYYTDGQKIPE 402


>gi|167740653|ref|ZP_02413427.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           14]
 gi|167847747|ref|ZP_02473255.1| flagellar biosynthesis regulator FlhF [Burkholderia pseudomallei
           B7210]
          Length = 367

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 111/289 (38%), Gaps = 28/289 (9%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + IV+ L        +
Sbjct: 43  LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEGYDTL 102

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137
                      ++   L  L          R  V  ++G  GVGKTT   KL+ +  M  
Sbjct: 103 DAAAD--WAQSVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMRF 158

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV L   D++R    +QL+I+           + G D           A+ +   ++
Sbjct: 159 GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHMV 212

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA- 256
           +IDT G    +  +   I  +           P   L +L+AT+  + L +V   +  A 
Sbjct: 213 LIDTIGMSQRDRTVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSAA 266

Query: 257 --------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                      G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 267 GQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 315


>gi|238025870|ref|YP_002910101.1| flagellar biosynthesis regulator FlhF [Burkholderia glumae BGR1]
 gi|124695887|gb|ABN14281.1| FlhF [Burkholderia glumae BGR1]
 gi|237875064|gb|ACR27397.1| FlhF [Burkholderia glumae BGR1]
          Length = 574

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 99/254 (38%), Gaps = 21/254 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L     A   S +        ++   L  L         
Sbjct: 284 LTKRLFAAGFSAQLVRTVVDNLPAGVSAG--SFEGACDWAESVLAGNLPVLDSE--DALM 339

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 340 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGRILG 399

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 + G D           ++ +   +++IDT G    +  +   I  +        
Sbjct: 400 VPVHAVKDGGDLQ------LALSELRNKHIVLIDTIGMSQRDRTVSDQIAML------QG 447

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFH---AVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
             A    L +L AT+  + L +V   +         G I+TK+D     GG++  V+ ++
Sbjct: 448 ADARVQRLLLLAATSHGDTLNEVVQAYRGSDQPDLAGCILTKLDEATNLGGVLDTVIRYQ 507

Query: 284 IPVYFLGVGEGIND 297
           +PV+++  G+ + +
Sbjct: 508 LPVHYVSTGQKVPE 521


>gi|224532110|ref|ZP_03672742.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia valaisiana VS116]
 gi|224511575|gb|EEF81981.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia valaisiana VS116]
          Length = 388

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 119/314 (37%), Gaps = 24/314 (7%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q +  E  S I  + K   S   +L +          ++     ++ED+L  +D      
Sbjct: 75  QSIKREENSSIEDVLKEVKSLKTELAQK------KENINHPTITKIEDILRENDFSENYI 128

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + I E +  +    D+     + +   L     +  S     D   R  V ++VG  GVG
Sbjct: 129 KDINEFIKREFSLSDLDDYERVREDVVLYIAKTIKCSGSIIDDLKKR--VFILVGPTGVG 186

Query: 124 KTTVIGKLSKKMSDAG----LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           KTT I KL+      G    L + +   D +R  A  Q++ + D         E   D  
Sbjct: 187 KTTTIAKLAAIYGINGESKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVRAIESFKDLK 246

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
                  +   +K  D++++DT G+   + + +A + +++    R            + +
Sbjct: 247 D------EITDSKDFDLILVDTIGKSPKDFMKLAEMKELLNACGR-----DAEFHLAVSS 295

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND-L 298
           TT  + ++++    +      +I TK+D T   G LI ++   K  V ++  G+ +   +
Sbjct: 296 TTKTSDVKEIFHQFSPFNYKTVIFTKVDETTCVGNLISLIYEMKKVVSYVTDGQIVPHNI 355

Query: 299 EPFVAKDFSAVITG 312
                  F   I G
Sbjct: 356 SVAEPLTFIRRING 369


>gi|161723184|ref|NP_243303.2| flagellar biosynthesis regulator FlhF [Bacillus halodurans C-125]
          Length = 381

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 111/268 (41%), Gaps = 19/268 (7%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW----D 106
           + L + ++  AV  ++V+ LL   + ++   ++  +   EL+ K    L +  +      
Sbjct: 122 EQLKQQEVCEAVRLQLVKHLLQ-AWLQEEGDEQTPWSYEELLTKGEQLLKRKLSLLPEGG 180

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            + +   + +VG  GVGKTT I KL+   +     KV L   DT+R AA++QLK +A   
Sbjct: 181 ITFQKKFVNIVGPTGVGKTTTIAKLAAHSVLKKKKKVALITTDTYRIAAVEQLKTYAKIL 240

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +          D          + Q    D++++D+AGR   N++ +  + K+I      
Sbjct: 241 NIPLEVVYSMEDFQK------AKNQFIHYDLVLVDSAGRNFRNALYVKELEKVIDFKHEA 294

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                     VL  T     ++ +    ++     +I TK D T   G ++ ++      
Sbjct: 295 ------ENYLVLSLTGKYRDMKAIIEQFSLVPIKQIIFTKQDETDTYGAMLNMMFEQGKG 348

Query: 286 VYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           V ++  G+ + +D+           I G
Sbjct: 349 VAYVTNGQNVPDDIVESSNDWIIQTILG 376


>gi|226939712|ref|YP_002794785.1| flagellar biosynthesis regulator FlhF [Laribacter hongkongensis
           HLHK9]
 gi|226714638|gb|ACO73776.1| FlhF [Laribacter hongkongensis HLHK9]
          Length = 506

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 104/254 (40%), Gaps = 19/254 (7%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           EL   L+   +G++ A  +  +L++K          + +  S LIH + +    P + D 
Sbjct: 225 ELFRKLLT--VGMSPA--LCRQLVSKLPGHFDEEAALKWAKSALIHNLRVL---PESDDI 277

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             +  V  +VG  GVGKTT I KL+ +  +      V L   D++R  A DQLK++    
Sbjct: 278 VDKGGVYALVGPTGVGKTTTIAKLAARATLRKGADAVALITTDSYRIGAQDQLKLYGRIL 337

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                  +        A  A          +++ID+ G    +  L           +  
Sbjct: 338 QISVYAVDNE------ADLALTLKDLSHKHLVLIDSVGIGQRDPRLNGQTQMYAASGQ-- 389

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                   + VL A    + L+ V   +   G  G I++K+D +   G  + + + H++P
Sbjct: 390 -GERAIRRILVLAANAAGHTLQDVIQRYQGEGLVGTIISKLDESPALGVALDVAIRHRLP 448

Query: 286 VYFLGVGEGIN-DL 298
           V+++  G+ +  DL
Sbjct: 449 VFYIANGQRVPEDL 462


>gi|330720587|gb|EGG98854.1| Flagellar biosynthesis protein FlhF [gamma proteobacterium
           IMCC2047]
          Length = 482

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 98/249 (39%), Gaps = 15/249 (6%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +   L ++ A+  S    + +  +   + L             R  VI ++G  G GKTT
Sbjct: 218 ISSTLARKLAQQQSYADTIEEAWQGCLRDLAADIPVLEKSPVGRRGVIALLGATGAGKTT 277

Query: 127 VIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
            I KL+ +        ++ L   D++R AA ++L+             +  +    +   
Sbjct: 278 TIAKLAVRYALKFGPGQLALVTTDSYRLAAYEELRTLGRIVDVPVRQVDEYNSLDEVL-- 335

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
               A  K   +++IDTAG    +   M  +  +       +       L VL +T+  N
Sbjct: 336 ----ASLKHKSMVLIDTAGFHAGDKERMKQLEML------ENSKVDIKKLLVLPSTSQSN 385

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVA 303
            L+ +    A     G ++TK+D T   G ++ +VV + +PV ++  G+ I +D+     
Sbjct: 386 VLKSMYELMATVSLQGCVLTKIDETNSLGEVLSLVVENTLPVAYITNGQKIPDDIGKARP 445

Query: 304 KDFSAVITG 312
                 + G
Sbjct: 446 DKLVQGLAG 454


>gi|260886654|ref|ZP_05897917.1| flagellar biosynthesis protein FlhF [Selenomonas sputigena ATCC
           35185]
 gi|330839515|ref|YP_004414095.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Selenomonas sputigena ATCC 35185]
 gi|260863797|gb|EEX78297.1| flagellar biosynthesis protein FlhF [Selenomonas sputigena ATCC
           35185]
 gi|329747279|gb|AEC00636.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Selenomonas sputigena ATCC 35185]
          Length = 578

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/287 (20%), Positives = 125/287 (43%), Gaps = 17/287 (5%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
           ++K  +  ++S  +  +     L+ +L + ++   +   +V +L  +    D      L 
Sbjct: 306 QMKAMLVQVVSKEKTPEDEM-SLQQVLKQQEVESDIIDDVVLQLPAEAILADKDTPLALD 364

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLA 145
            +++ +    + ++         R  +  ++G  GVGKTT + K++ +   + G+     
Sbjct: 365 GLTKYLADN-VQMADGLELKSRKR-KIAALLGPTGVGKTTTLAKIAAQCVLEKGISTAFI 422

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             DT+R +A++QLK +AD             +      EA ++ + K+  +++IDTAGR 
Sbjct: 423 TADTYRISAVEQLKTYADILGLPIAIVYTPDELK----EAIQKFRQKQ--LILIDTAGRS 476

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            +N   MA + + + V      +       VL ATT     + +    +V     +I TK
Sbjct: 477 QHNRRQMAELKEFLAV------NQNIEKYLVLSATTKNEDAKDIIDKFSVCKPDKVIFTK 530

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
            D T   G ++ I+   ++ + +L  G+ + +D+ P  A   + +  
Sbjct: 531 TDETKSLGIILNILRRKEMRLSYLTNGQSVPDDIVPAEAGKLAELFL 577


>gi|82702440|ref|YP_412006.1| flagellar biosynthesis regulator FlhF [Nitrosospira multiformis
           ATCC 25196]
 gi|82410505|gb|ABB74614.1| GTP-binding signal recognition particle SRP54, G-domain
           [Nitrosospira multiformis ATCC 25196]
          Length = 570

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 109/276 (39%), Gaps = 25/276 (9%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           D VR +L   L+ + +  A  Q ++++L  K     +     +  V   +   L  +   
Sbjct: 271 DPVRGQLFRQLLAAGLHDASVQALLDQLPEK-----LDASAAMNWVRTALTGNLQTIGNE 325

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKI 160
              +   +  V  +VG  GVGKTT   KL+ +        KV L   D++R    +QL+I
Sbjct: 326 --DEILEKGGVYALVGPTGVGKTTTTAKLAARCVVRHGASKVALLTTDSYRIGGHEQLRI 383

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           +               D A +  E       +   +++IDT G    + ++   +  +  
Sbjct: 384 YGKILGVSIHAVRDTQDLALVLNE------LRGKHIVLIDTVGVGQRDQMVAEQVAML-- 435

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
                   +    L +L+A +  + L +V   +   G  G I++K+D     G  + I +
Sbjct: 436 ----SGCGSEIKRLLLLNAASSWHTLDEVAEAYWGDGLAGAIISKLDEAVVTGCALDIAM 491

Query: 281 THKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLD 315
            H +P+Y++  G+ +  D+E   A+          D
Sbjct: 492 RHNLPLYYVANGQRVPEDIELADAESLVNR---MFD 524


>gi|320529413|ref|ZP_08030501.1| flagellar biosynthesis protein FlhF [Selenomonas artemidis F0399]
 gi|320138379|gb|EFW30273.1| flagellar biosynthesis protein FlhF [Selenomonas artemidis F0399]
          Length = 472

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 113/268 (42%), Gaps = 22/268 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           + D L R D+     +++ EEL  K    D+++  +     E++   L  + K F     
Sbjct: 220 IRDALKRQDVR----KELREELAAKVPVADINLDSLSPRAKEVLAGYLSQVMK-FTDGLR 274

Query: 109 HRPHVILVVGVNGVGKTTV---IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              H   VV   G         + K++     +  LK  L   DT+R +A++QLK +A+ 
Sbjct: 275 LGAHGSRVVAFIGTTGVGKTTTLAKVAAHFVLEQNLKGALITADTYRISAVEQLKKYAEI 334

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                      +D           A+ +  D +++DTAGR   N   M  + +++    R
Sbjct: 335 LGLPVEVVYSAADLKK------AIARHRSKDFILVDTAGRSQYNDFQMDELKQLLAAHPR 388

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           ++ H       V+ ATT +    ++    +      +I TK D T   G ++ ++   ++
Sbjct: 389 MEKH------LVVSATTKEQDAAEIMARFSACKPDRIIFTKTDETRSVGVVLNLLAGKEL 442

Query: 285 PVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
           P+ FL  G+ + +D+ P  A+  + ++ 
Sbjct: 443 PLSFLSNGQSVPDDIIPATAQRLAELLL 470


>gi|111115095|ref|YP_709713.1| flagellar biosynthesis regulator FlhF [Borrelia afzelii PKo]
 gi|216263765|ref|ZP_03435759.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia afzelii ACA-1]
 gi|110890369|gb|ABH01537.1| flagellar-associated GTP-binding protein [Borrelia afzelii PKo]
 gi|215979809|gb|EEC20631.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia afzelii ACA-1]
          Length = 388

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 108/281 (38%), Gaps = 18/281 (6%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
               ++     ++ED+L  +D      + I E +  +    D+     + +   L     
Sbjct: 102 KKENINHPTITKIEDILRENDFSENYIKDINEFIKREFSLSDLDDYERVREDVVLYIAKT 161

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRS 152
           +  S     D   R  V ++VG  GVGKTT I KL+      G    L + +   D +R 
Sbjct: 162 IKCSGSIIDDLKKR--VFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRI 219

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A  Q++ + D         E   D         +   +K  D++++DT G+   + + +
Sbjct: 220 GAKKQIQTYGDIMGIPVRAIESFKDLKD------EITDSKDFDLILVDTIGKSPKDFMKL 273

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
           A + +++    R            + +TT  + ++++    +      +I TK+D T   
Sbjct: 274 AEMKELLNACGR-----DAEFHLAVSSTTKTSDVKEIFHQFSPFNYKTVIFTKVDETTCV 328

Query: 273 GGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDFSAVITG 312
           G LI ++   K  V ++  G+ +   +       F   I G
Sbjct: 329 GNLISLIYEMKKVVSYVTDGQIVPHNISVAEPLTFIRRING 369


>gi|51598530|ref|YP_072718.1| flagellar biosynthesis regulator FlhF [Borrelia garinii PBi]
 gi|219684695|ref|ZP_03539638.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia garinii PBr]
 gi|219685763|ref|ZP_03540574.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia garinii Far04]
 gi|51573101|gb|AAU07126.1| flagellar-associated GTP-binding protein [Borrelia garinii PBi]
 gi|219672057|gb|EED29111.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia garinii PBr]
 gi|219672702|gb|EED29730.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia garinii Far04]
          Length = 388

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 108/281 (38%), Gaps = 18/281 (6%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
               ++     ++ED+L  +D      + I E +  +    D+     + +   L     
Sbjct: 102 KKENINHPTITKIEDILRENDFSENYIKDINEFIKREFSLSDLDDYERVREDVVLYIAKT 161

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRS 152
           +  S     D   R  V ++VG  GVGKTT I KL+      G    L + +   D +R 
Sbjct: 162 IKCSGSIIDDLKKR--VFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRI 219

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A  Q++ + D         E   D         +   +K  D++++DT G+   + + +
Sbjct: 220 GAKKQIQTYGDIMGIPVRAIESFKDLKD------EITDSKDFDLILVDTIGKSPKDFMKL 273

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
           A + +++    R            + +TT  + ++++    +      +I TK+D T   
Sbjct: 274 AEMKELLNACGR-----DAEFHLAVSSTTKTSDVKEIFHQFSPFNYKTVIFTKVDETTCV 328

Query: 273 GGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDFSAVITG 312
           G LI ++   K  V ++  G+ +   +       F   I G
Sbjct: 329 GNLISLIYEMKKVVSYVTDGQIVPHNISVAEPLTFIRRING 369


>gi|224534267|ref|ZP_03674845.1| flagellar biosynthesis protein FlhF [Borrelia spielmanii A14S]
 gi|224514369|gb|EEF84685.1| flagellar biosynthesis protein FlhF [Borrelia spielmanii A14S]
          Length = 388

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 108/281 (38%), Gaps = 18/281 (6%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
               ++     ++ED+L  +D      + I E +  +    D+     + +   L     
Sbjct: 102 KKENINHPTITKIEDILRENDFSENYIKDINEFIKREFSLSDLDDYERVREDVVLYIAKT 161

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRS 152
           +  S     D   R  V ++VG  GVGKTT I KL+      G    L + +   D +R 
Sbjct: 162 IKCSGSIIDDLKKR--VFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRI 219

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A  Q++ + D         E   D         +   +K  D++++DT G+   + + +
Sbjct: 220 GAKKQIQTYGDIMGIPVRAIESFKDLKD------EITDSKDFDLILVDTIGKSPKDFMKL 273

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
           A + +++    R            + +TT  + ++++    +      +I TK+D T   
Sbjct: 274 AEMKELLNACGR-----DAEFHLAVSSTTKTSDVKEIFHQFSPFNYKTVIFTKVDETTCV 328

Query: 273 GGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDFSAVITG 312
           G LI ++   K  V ++  G+ +   +       F   I G
Sbjct: 329 GNLISLIYEMKKVVSYVTDGQIVPHNISVAEPLTFIRRING 369


>gi|161523357|ref|YP_001578369.1| flagellar biosynthesis regulator FlhF [Burkholderia multivorans
           ATCC 17616]
 gi|189351870|ref|YP_001947498.1| flagellar biosynthesis regulator FlhF [Burkholderia multivorans
           ATCC 17616]
 gi|160340786|gb|ABX13872.1| GTP-binding signal recognition particle SRP54 G- domain
           [Burkholderia multivorans ATCC 17616]
 gi|189335892|dbj|BAG44962.1| flagellar biosynthesis protein [Burkholderia multivorans ATCC
           17616]
          Length = 583

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 102/260 (39%), Gaps = 27/260 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L     A+  +    L     ++   L  L         
Sbjct: 288 LSKHLFAAGFSAQLVRMLVDHLPAGDGAQ--TFDAALEWAQSVLAANLPVLGSE--DALM 343

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 344 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 403

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D       +   ++ +   +++IDT G    +  +   I  +        
Sbjct: 404 VPVHAVKDAGDL------SLALSELRNKHIVLIDTIGMSQRDRAVSDQIAMLH------G 451

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG---------TTGLIMTKMDGTARGGGLIP 277
              P   L +L+AT+  + L +V   +  AG           G I+TK+D     GG + 
Sbjct: 452 ASTPVQRLLLLNATSHGDTLNEVVQAYRSAGDRADLAGPDLAGCILTKLDEATHLGGALD 511

Query: 278 IVVTHKIPVYFLGVGEGIND 297
            V+ +K+PV+++  G+ + +
Sbjct: 512 TVIRYKLPVHYVSTGQKVPE 531


>gi|121997282|ref|YP_001002069.1| GTP-binding signal recognition particle [Halorhodospira halophila
           SL1]
 gi|121588687|gb|ABM61267.1| GTP-binding signal recognition particle SRP54, G- domain
           [Halorhodospira halophila SL1]
          Length = 585

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 93/261 (35%), Gaps = 24/261 (9%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G  V++K+ + +       D +          LI + L             R  V  +V
Sbjct: 324 MGTEVSRKLADHI-----GGDENPDTAFRKALALIARHLPIAGDQI----VDRGGVYALV 374

Query: 118 GVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  GVGKTT + KL+ +        +V L + D +R  A DQL  +A         +   
Sbjct: 375 GPTGVGKTTTVAKLAARYALRHGREQVALVSTDNYRVGAQDQLLTYARILDVPVYTATNR 434

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            +   +  +   +       +++IDT G    +  L      +                 
Sbjct: 435 HELRTIVDDLMDRG------LVLIDTVGMSQRDVRLAEQFKTL------GSAEGLVKTYL 482

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VL A T    L +     A A   G I TK+D  +  GG +   +  K+P+ +L VG+ +
Sbjct: 483 VLSAATQMATLTESVSAFAGAEPVGCIFTKVDEASSLGGAMTCALRTKLPIAYLAVGQRV 542

Query: 296 N-DLEPFVAKDFSAVITGCLD 315
             DL+              LD
Sbjct: 543 PEDLQAARGDTLVHRACALLD 563


>gi|315930434|gb|EFV09500.1| signal recognition particle-docking protein FtsY [Campylobacter
           jejuni subsp. jejuni 305]
          Length = 152

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 84/147 (57%)

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              D V +  G D +A+ ++   +A+AK  D +IIDTAGRL N   L   + K++R+  +
Sbjct: 1   MDVDIVLTAQGHDPSAVTFDTISKAKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNK 60

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
               APH  + VLD T G   + Q + F+ +    G+I+TK+DGTA+GG L  I    ++
Sbjct: 61  ALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELEL 120

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVIT 311
           P++++GVGE + DL+ F A  +   + 
Sbjct: 121 PIFYVGVGEQMTDLQEFNASAYLDTLL 147


>gi|254821185|ref|ZP_05226186.1| hypothetical protein MintA_14707 [Mycobacterium intracellulare ATCC
           13950]
          Length = 139

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/139 (43%), Positives = 83/139 (59%), Gaps = 2/139 (1%)

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            G+D A++A++A  +  A  VDV++IDTAGRLH    LM  + K+ RV+ R    A   V
Sbjct: 3   EGADPASVAFDAVDKGIAAGVDVVLIDTAGRLHTKVGLMDELDKVKRVVTRR--AAVDEV 60

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           L VLDAT GQN L Q  +F  V   TG ++TK+DGTA+GG +  +     +PV  +G+GE
Sbjct: 61  LLVLDATIGQNGLAQARVFAEVVEITGAVLTKLDGTAKGGIVFRVQQELGVPVKLVGLGE 120

Query: 294 GINDLEPFVAKDFSAVITG 312
           G +DL PF    F   + G
Sbjct: 121 GPDDLAPFEPAAFVDALLG 139


>gi|157692320|ref|YP_001486782.1| flagellar biosynthesis regulator FlhF [Bacillus pumilus SAFR-032]
 gi|157681078|gb|ABV62222.1| flagellar biosynthesis protein FlhF [Bacillus pumilus SAFR-032]
          Length = 371

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 104/251 (41%), Gaps = 18/251 (7%)

Query: 64  QKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             I +E L     K  V  +++  ++ +L+  ML   +     D   R   I++ G  G 
Sbjct: 135 DAIRDECLKGLLTKGAVKEEQIQKELEQLLTDMLPSHTS---DDPMIRSKYIVLFGSTGA 191

Query: 123 GKTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           GKTT I KL+ K +     K+     DT+R AAI+QLK +A+  +A         D    
Sbjct: 192 GKTTTIAKLAAKTAIQKQKKIAFITTDTYRIAAIEQLKTYAELLNAPLEVCYSREDFVK- 250

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A E FK+      D + +DTAGR       +  +  +I   + +          V+ AT+
Sbjct: 251 AQETFKE-----YDHIFVDTAGRNFKEEAYIKELTDIIPFDESIQS------FLVMSATS 299

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEP 300
               ++ +            I TK+D T   G +  I+   +I + FL  G+ +  D+  
Sbjct: 300 KYQDMKAMVKRFEHVSIDQFIFTKVDETDTMGTIFQIIADSQIGLGFLTNGQNVPEDILE 359

Query: 301 FVAKDFSAVIT 311
               + + ++ 
Sbjct: 360 GSPLELTRMVL 370


>gi|304311115|ref|YP_003810713.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1]
 gi|301796848|emb|CBL45060.1| Flagellar biosynthetic protein [gamma proteobacterium HdN1]
          Length = 523

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 24/242 (9%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           I   + +++V +L +       S++  +  V + +HK L   S     D   R  ++ ++
Sbjct: 259 IAAPICRRLVNQLPSS------SIREGMRVVLQRLHKELSIFS----PDIRERGGIVALL 308

Query: 118 GVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  GVGKTT I K++          +V L   D++R A  +QLK                
Sbjct: 309 GPAGVGKTTSISKIAAAYAMKHGVDEVALVTTDSYRIAGHEQLKTLGKILRVPMRVVTEE 368

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
                +  +       K   +++IDTAG  H +      +  +  + +++      + L 
Sbjct: 369 YPLTLVLEQ------LKNKKLILIDTAGLSHRDQDFEEQMKILGGLPRQI------TRLL 416

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VL +T+ +  L +    +   G  G I+TK+D  A  G  + +VV  ++PV +   G+ I
Sbjct: 417 VLASTSQKRILEKAVEDYQPLGLDGCILTKLDECASLGEALSVVVEARLPVAYTTDGQNI 476

Query: 296 ND 297
            D
Sbjct: 477 PD 478


>gi|301622214|ref|XP_002940432.1| PREDICTED: signal recognition particle receptor subunit alpha
           [Xenopus (Silurana) tropicalis]
          Length = 578

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 30/205 (14%)

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSD 177
           +S  + + G  V++AA DTFR+ A++QL+    R +                     G D
Sbjct: 378 ISFWLIENGFSVLIAACDTFRAGAVEQLRTHTQRLNSRHPPEKHKGRTMVQLYEKGYGKD 437

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           AA +A EA   A+ +  DV+++DTAGR+ +N+ LM  + K+I V      + P  VL V 
Sbjct: 438 AAGIAMEAISYARNQAFDVVLVDTAGRMQDNAPLMTALAKLIAV------NVPDLVLFVG 491

Query: 238 DATTGQNALRQ------VEMFHAVAG----TTGLIMTKMDG-TARGGGLIPIVVTHKIPV 286
           +A  G  A+ Q          +++A       G+++TK D    + G  I +      P+
Sbjct: 492 EALVGNEAVDQLVKFNKALADYSMADKPRLIDGIVLTKFDTIDDKVGAAISMTYITGQPI 551

Query: 287 YFLGVGEGINDLEPFVAKDFSAVIT 311
            F+G G+   DL    AK   A + 
Sbjct: 552 VFVGTGQTYCDLRLLNAKAVVAALM 576


>gi|5912331|emb|CAB56072.1| cell division protein [Rickettsia helvetica]
          Length = 136

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/136 (42%), Positives = 90/136 (66%)

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A++AY A +++  + +D+L IDTAGRLHN   LM  + K+++V+K+LD +AP   + ++
Sbjct: 1   PASVAYRAMEESIKQNIDILFIDTAGRLHNKKNLMDELAKIVKVIKKLDENAPTHSVLII 60

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           DA TGQN   QVE F+     TGLI+TK+DG+A+ G ++ +V    +PVYF+ +GE I D
Sbjct: 61  DAITGQNTYNQVEHFNDATNLTGLIVTKLDGSAKAGVIVGVVQKFNLPVYFISIGEKIED 120

Query: 298 LEPFVAKDFSAVITGC 313
           L+ F   DF+  + G 
Sbjct: 121 LKIFNRHDFAKSLVGL 136


>gi|1185064|gb|AAB58973.1| putative [Borrelia burgdorferi]
          Length = 387

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 108/281 (38%), Gaps = 18/281 (6%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
               ++     ++ED+L  +D      + I E +  +    D+     + +   L     
Sbjct: 101 KKENINHPTITKIEDILRENDFSENYIKDINEFIKREFSLSDLDDYERVREDVVLYIAKT 160

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRS 152
           +  S     +   R  V ++VG  GVGKTT I KL+      G    L + +   D +R 
Sbjct: 161 IKCSGSIIDNLKKR--VFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRI 218

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A  Q++ + D         E   D         +   +K  D++++DT G+   + + +
Sbjct: 219 GAKKQIQTYGDIMGIPVRAIESFKDLKD------EITDSKDFDLILVDTIGKSPKDFMKL 272

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
           A + +++    R            + +TT  + ++++    +      +I TK+D T   
Sbjct: 273 AEMKELLNACGR-----DAEFHLAVSSTTKTSDVKEIFHQFSPFNYKTVIFTKVDETTCV 327

Query: 273 GGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDFSAVITG 312
           G LI ++   K  V ++  G+ +   +       F   I G
Sbjct: 328 GNLISLIYEMKKVVSYVTDGQIVPHNISVAEPLTFIRRING 368


>gi|254785488|ref|YP_003072917.1| flagellar biosynthetic protein FlhF [Teredinibacter turnerae T7901]
 gi|237684381|gb|ACR11645.1| flagellar biosynthetic protein FlhF [Teredinibacter turnerae T7901]
          Length = 506

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 18/219 (8%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   +  V   VG  GVGKTT I KL+ +        KV L   DT+R  A DQL+    
Sbjct: 294 DLVQQGGVFAFVGQTGVGKTTTIAKLAARYVLDHGPGKVALITTDTYRVGAYDQLRSLGR 353

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
             +      +       +       A  K+  +++IDTAG  H + +L          L+
Sbjct: 354 ILNVPVRAVDAEHSLLRVL------ASLKQFPLILIDTAGFRHGDPLLKEQ-------LR 400

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
           +LD       + VL   + +  +      + +  G    ++TK+D  A  G  + ++V  
Sbjct: 401 KLDSCPAVKRVLVLACNSQRQTMTASTHAYASRQGIDACVLTKLDEAASLGEALSVLVER 460

Query: 283 KIPVYFLGVGEGIN-DLEPFVAKDF-SAVITGCLDYGEE 319
           ++PV +   G+ I  D+    A    ++ +      GEE
Sbjct: 461 QLPVAYTTNGQEIPRDIARASAHQLVASAVALLRAEGEE 499


>gi|116049398|ref|YP_791799.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296390180|ref|ZP_06879655.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa PAb1]
 gi|313106452|ref|ZP_07792683.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa 39016]
 gi|115584619|gb|ABJ10634.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879185|gb|EFQ37779.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa 39016]
          Length = 429

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 102/256 (39%), Gaps = 24/256 (9%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G+    ++ + LL +  A   + Q     ++ L   +  P   P +        V+ +V
Sbjct: 163 MGLPA--ELSKPLLERVAAVGDTRQAWRMLLAHLSRAVQTPEQDPLDAGG-----VLALV 215

Query: 118 GVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  G GKTT + K++ +         + L + D++R  A +Q+K      +      + G
Sbjct: 216 GPAGAGKTTTLAKMAARYVLKYGAQSLALVSMDSYRIGAQEQIKTLGRILNVPVTLVDPG 275

Query: 176 SDA-AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
                ALA  A K+       +++IDTAG   ++  L   +  +        P       
Sbjct: 276 QSLIQALAPLARKR-------MVLIDTAGLPASDPALRMQLEAL------ASPSLNVKNY 322

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+  T+    L+     +   G  G I+TK+D     G  + + +  ++PV +L  G  
Sbjct: 323 LVMATTSQSQVLKSAYQTYRHCGLAGCILTKLDEAGSLGESMALAIAQRLPVAYLADGPR 382

Query: 295 I-NDLEPFVAKDFSAV 309
           I +DL+   +    + 
Sbjct: 383 IPDDLQVARSHQLVSR 398


>gi|90411038|ref|ZP_01219052.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
 gi|90328251|gb|EAS44562.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
          Length = 586

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 88/200 (44%), Gaps = 14/200 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V+ ++G  GVGKTT I KL+ + +      ++ L   DT+R  A +QL  +         
Sbjct: 368 VVALLGPTGVGKTTTIAKLAARAAMDFGADEIALVTTDTYRIGAHEQLATYGRIMGCPVR 427

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++   + A + ++       +   ++++DTAG    +  L   +  +++     +  A 
Sbjct: 428 VAKDAEELADILHQ------LRHRRLVLLDTAGMGQRDIRLSEQLDTLMQ-----NSGAH 476

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                VL +T  +  L++          +G ++TK+D +   G ++ + + + +P+ +L 
Sbjct: 477 IRSFLVLPSTAQRRVLQETIEHFRRIPLSGCVLTKLDESLSLGEVMCVTIQNALPIAYLA 536

Query: 291 VGEGIN-DLEPFVAKDFSAV 309
            G+ +  D++        + 
Sbjct: 537 DGQRVPEDIKVATGNYLVSR 556


>gi|15594615|ref|NP_212404.1| flagellar biosynthesis regulator FlhF [Borrelia burgdorferi B31]
 gi|195941376|ref|ZP_03086758.1| flagellar biosynthesis regulator FlhF [Borrelia burgdorferi 80a]
 gi|216264716|ref|ZP_03436708.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi 156a]
 gi|218249313|ref|YP_002374793.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi ZS7]
 gi|221217685|ref|ZP_03589153.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi 72a]
 gi|223888784|ref|ZP_03623375.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi 64b]
 gi|224533208|ref|ZP_03673808.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi WI91-23]
 gi|224533859|ref|ZP_03674447.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi CA-11.2a]
 gi|225549184|ref|ZP_03770159.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 94a]
 gi|225550144|ref|ZP_03771104.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 118a]
 gi|226320570|ref|ZP_03796130.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 29805]
 gi|226321588|ref|ZP_03797114.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi Bol26]
 gi|3913665|sp|Q44758|FLHF_BORBU RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|1165255|gb|AAA85594.1| FlhF [Borrelia burgdorferi]
 gi|2688196|gb|AAC66678.1| flagellar-associated GTP-binding protein (flhF) [Borrelia
           burgdorferi B31]
 gi|215981189|gb|EEC21996.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi 156a]
 gi|218164501|gb|ACK74562.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi ZS7]
 gi|221192362|gb|EEE18581.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi 72a]
 gi|223885600|gb|EEF56699.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-binding protein) [Borrelia burgdorferi 64b]
 gi|224511935|gb|EEF82336.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi WI91-23]
 gi|224513152|gb|EEF83515.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi CA-11.2a]
 gi|225369256|gb|EEG98709.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 118a]
 gi|225370410|gb|EEG99848.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 94a]
 gi|226232777|gb|EEH31530.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi Bol26]
 gi|226233989|gb|EEH32710.1| flagellar biosynthesis protein FlhF [Borrelia burgdorferi 29805]
 gi|312147780|gb|ADQ30439.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-bindingprotein) [Borrelia burgdorferi JD1]
 gi|312149574|gb|ADQ29645.1| flagellar biosynthesis protein FlhF (Flagella-associated
           GTP-bindingprotein) [Borrelia burgdorferi N40]
          Length = 388

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 108/281 (38%), Gaps = 18/281 (6%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
               ++     ++ED+L  +D      + I E +  +    D+     + +   L     
Sbjct: 102 KKENINHPTITKIEDILRENDFSENYIKDINEFIKREFSLSDLDDYERVREDVVLYIAKT 161

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRS 152
           +  S     +   R  V ++VG  GVGKTT I KL+      G    L + +   D +R 
Sbjct: 162 IKCSGSIIDNLKKR--VFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRI 219

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A  Q++ + D         E   D         +   +K  D++++DT G+   + + +
Sbjct: 220 GAKKQIQTYGDIMGIPVRAIESFKDLKD------EITDSKDFDLILVDTIGKSPKDFMKL 273

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
           A + +++    R            + +TT  + ++++    +      +I TK+D T   
Sbjct: 274 AEMKELLNACGR-----DAEFHLAVSSTTKTSDVKEIFHQFSPFNYKTVIFTKVDETTCV 328

Query: 273 GGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDFSAVITG 312
           G LI ++   K  V ++  G+ +   +       F   I G
Sbjct: 329 GNLISLIYEMKKVVSYVTDGQIVPHNISVAEPLTFIRRING 369


>gi|107100887|ref|ZP_01364805.1| hypothetical protein PaerPA_01001917 [Pseudomonas aeruginosa PACS2]
 gi|218892674|ref|YP_002441543.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa
           LESB58]
 gi|254234552|ref|ZP_04927875.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa C3719]
 gi|254239802|ref|ZP_04933124.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa 2192]
 gi|126166483|gb|EAZ51994.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa C3719]
 gi|126193180|gb|EAZ57243.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa 2192]
 gi|218772902|emb|CAW28714.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa LESB58]
          Length = 429

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 102/256 (39%), Gaps = 24/256 (9%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G+    ++ + LL +  A   + Q     ++ L   +  P   P +        V+ +V
Sbjct: 163 MGLPA--ELSKPLLERVAAVGDTRQAWRMLLAHLSRAVQTPEQDPLDAGG-----VLALV 215

Query: 118 GVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  G GKTT + K++ +         + L + D++R  A +Q+K      +      + G
Sbjct: 216 GPAGAGKTTTLAKMAARYVLKYGAQSLALVSMDSYRIGAQEQIKTLGRILNVPVTLVDPG 275

Query: 176 SDA-AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
                ALA  A K+       +++IDTAG   ++  L   +  +        P       
Sbjct: 276 QSLIQALAPLARKR-------MVLIDTAGLPASDPALRMQLEAL------ASPSLNVKNY 322

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+  T+    L+     +   G  G I+TK+D     G  + + +  ++PV +L  G  
Sbjct: 323 LVMATTSQSQVLKSAYQTYRHCGLAGCILTKLDEAGSLGESMALAIAQRLPVAYLADGPR 382

Query: 295 I-NDLEPFVAKDFSAV 309
           I +DL+   +    + 
Sbjct: 383 IPDDLQVARSHQLVSR 398


>gi|313895912|ref|ZP_07829466.1| flagellar biosynthesis protein FlhF [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975337|gb|EFR40798.1| flagellar biosynthesis protein FlhF [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 472

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 113/268 (42%), Gaps = 22/268 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           + D L R D+     +++ EEL  K    D+++  +     E++   L  + K F     
Sbjct: 220 IRDALKRQDVR----KELREELAAKVPVADINLDSLSPRAKEVLAGYLSQVMK-FTDGLR 274

Query: 109 HRPHVILVVGVNGVGKTTV---IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              H   VV   G         + K++     +  LK  L   DT+R +A++QLK +A+ 
Sbjct: 275 LGAHGSRVVAFIGTTGVGKTTTLAKVAAHFVLEQNLKGALITADTYRISAVEQLKKYAEI 334

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                      +D           A+ +  D +++DTAGR   N   M  + +++    R
Sbjct: 335 LGLPVEVVYSAADLKK------AIARHRSKDFILVDTAGRSQYNDFQMDELKQLLAAHPR 388

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           ++ H       V+ ATT +    ++    +      +I TK D T   G ++ ++   ++
Sbjct: 389 MEKH------LVVSATTKEQDAAEIMARFSACKPDRIIFTKTDETRSVGVVLNLLAGKEL 442

Query: 285 PVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
           P+ FL  G+ + +D+ P  A+  + ++ 
Sbjct: 443 PLSFLSNGQSVPDDIIPATAQRLAELLL 470


>gi|15596650|ref|NP_250144.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa PAO1]
 gi|81857291|sp|Q9I3P8|FLHF_PSEAE RecName: Full=Flagellar biosynthesis protein flhF; AltName:
           Full=Flagella-associated GTP-binding protein
 gi|9947405|gb|AAG04842.1|AE004575_1 flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa PAO1]
          Length = 429

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 102/256 (39%), Gaps = 24/256 (9%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G+    ++ + LL +  A   + Q     ++ L   +  P   P +        V+ +V
Sbjct: 163 MGLPA--ELSKPLLERVAAVGDTRQAWRMLLAHLSRAVQTPEQDPLDAGG-----VLALV 215

Query: 118 GVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  G GKTT + K++ +         + L + D++R  A +Q+K      +      + G
Sbjct: 216 GPAGAGKTTTLAKMAARYVLKYGAQSLALVSMDSYRIGAQEQIKTLGRILNVPVTLVDPG 275

Query: 176 SDA-AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
                ALA  A K+       +++IDTAG   ++  L   +  +        P       
Sbjct: 276 QSLIQALAPLARKR-------MVLIDTAGLPASDPALRMQLEAL------ASPSLNVKNY 322

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+  T+    L+     +   G  G I+TK+D     G  + + +  ++PV +L  G  
Sbjct: 323 LVMATTSQSQVLKSAYQTYRHCGLAGCILTKLDEAGSLGESMALAIAQRLPVAYLADGPR 382

Query: 295 I-NDLEPFVAKDFSAV 309
           I +DL+   +    + 
Sbjct: 383 IPDDLQVARSHQLVSR 398


>gi|304438445|ref|ZP_07398385.1| flagellar biosynthesis protein FlhF [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304368528|gb|EFM22213.1| flagellar biosynthesis protein FlhF [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 466

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 110/268 (41%), Gaps = 22/268 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           + D L++ D+     +++ E++  K    D ++  +    + ++   L  +   F     
Sbjct: 214 IRDALVKQDVR----EELCEDMAGKIPIADANLDSLDPRAAGVLAGYLSQVM-QFTDGLK 268

Query: 109 HRPHVILVVGVNGVGKTTV---IGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              H   V    G         + K++     +  LK  L   DT+R +A++QLK +A+ 
Sbjct: 269 PGTHGARVYAFIGTTGVGKTTTLAKIAAHFVLEQNLKGALITADTYRISAVEQLKKYAEI 328

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                      +D           A+ +  D +++DTAGR   N   M  +  ++    R
Sbjct: 329 LGLPVEVVYSATDLKK------AIARHRSKDFVLVDTAGRSQYNEFQMEELTSLLAAYAR 382

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           ++ H       V+ ATT +    Q+    A      +I TKMD T   G ++ ++    +
Sbjct: 383 MEKH------LVVSATTKEQDAVQIIERFAPCKPDCIIFTKMDETQTFGMVLNLLANRGL 436

Query: 285 PVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
           P+ FL  G+ + +D+ P  A+  + ++ 
Sbjct: 437 PLSFLSNGQSVPDDIIPATAERLAELLL 464


>gi|169827141|ref|YP_001697299.1| flagellar biosynthesis regulator FlhF [Lysinibacillus sphaericus
           C3-41]
 gi|168991629|gb|ACA39169.1| Flagellar biosynthesis protein flhF (Flagella-associated
           GTP-binding protein) [Lysinibacillus sphaericus C3-41]
          Length = 398

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 128/322 (39%), Gaps = 32/322 (9%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK 65
           V +E      +L K  A     L + +    +  +  D +   +E  L + ++   +   
Sbjct: 102 VKNEDTGISEELRKEIADLK-SLMQSMHKKTTQAQYPDELLPFIE-YLRQQELNEELITT 159

Query: 66  IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           I +EL    + A +++  +       L+ K L  L  P     S+    I V+G  GVGK
Sbjct: 160 IGDELFMHFKEASEINFSQCKMVTKNLLRKRLEDL--PIG-GLSYERKYINVLGPTGVGK 216

Query: 125 TTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           TT I K++ +   +   K+     DT+R AAI+QLK +A                  +AY
Sbjct: 217 TTTIAKMAARAVLEKKKKIGFITTDTYRIAAIEQLKTYAGLL----------QAPVEIAY 266

Query: 184 EAFKQAQA----KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            A    QA      +D++ IDTAGR +     +  + ++I+   + +         VL  
Sbjct: 267 NATDFEQAIQRLSHLDLVFIDTAGRNYKEIKYVDDLQRLIKFDDQAES------FLVLAM 320

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DL 298
           TT +  +  +            I TK+D T   G ++ +++ +   + +   G+ +  D+
Sbjct: 321 TTKEKDMANIIDQFNQLPIEKFIFTKIDETNSIGTMLNLMIKYNKGLAYYTNGQEVPEDI 380

Query: 299 EPFVAKDFSAVITGCLDYGEEK 320
           E          +      GEEK
Sbjct: 381 EEAD----LEAVLNLFFQGEEK 398


>gi|221133142|ref|XP_002171139.1| PREDICTED: similar to F21D5.7, partial [Hydra magnipapillata]
          Length = 259

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 6/120 (5%)

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V+I+DTAGRL  + ++M  + ++ + +       P  +L V+D+ TGQ+A+   + F+  
Sbjct: 5   VVIVDTAGRLAVDEVMMKEVEEIKKAIT------PSEILFVVDSMTGQDAVNTAKTFNER 58

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
               G+++TK+DG +RGG  + I      P+ F+  GE ++ L+ F     ++ I G  D
Sbjct: 59  LDFDGVVLTKLDGDSRGGAALSIKAVVNKPIKFISTGEKMDALDIFYPDRMASRILGMGD 118


>gi|153818942|ref|ZP_01971609.1| cell division protein FtsY [Vibrio cholerae NCTC 8457]
 gi|126510504|gb|EAZ73098.1| cell division protein FtsY [Vibrio cholerae NCTC 8457]
          Length = 120

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/116 (46%), Positives = 80/116 (68%)

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++I DTAGRL N S LM  + K++RV+K++D  APH ++  LDA TGQNA+ Q ++F  V
Sbjct: 1   MVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDV 60

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           A  TG+ +TK+DGTA+GG +  I    +IP+ ++GVGE I+DL PF  ++F   + 
Sbjct: 61  APITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALF 116


>gi|327398762|ref|YP_004339631.1| flagellar biosynthetic protein FlhF [Hippea maritima DSM 10411]
 gi|327181391|gb|AEA33572.1| flagellar biosynthetic protein FlhF [Hippea maritima DSM 10411]
          Length = 398

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 14/225 (6%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAG 147
            E + + L  +   F      +   I+++G  GVGKTT + KL+         KV +   
Sbjct: 179 EEYVKEYLSIVISQFFKQSKPKKKNIVLLGPTGVGKTTTLAKLAAIYKLKQDKKVGIITT 238

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           DT+R  A+DQL  +A       + S    D       A ++ +     V+++DT GR   
Sbjct: 239 DTYRIGAVDQLLNYAKIMDIPAIVSITKEDFK----NALEELKDMN--VVLVDTVGRSPQ 292

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +   +  +  + +   RL          V+   T +     +     +     LI TK+D
Sbjct: 293 DIKRLNELFGIFKNEDRLHLS------LVMAVNTKEEDCLNIHKRFGILPIDDLIFTKVD 346

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
            T   G ++ +VV  K PV ++  G+ + +D+        S++I 
Sbjct: 347 ETKTPGSMLNLVVKLKKPVSYVSFGQDVPDDIMEAQPLKISSLII 391


>gi|299534766|ref|ZP_07048096.1| flagellar biosynthesis regulator FlhF [Lysinibacillus fusiformis
           ZC1]
 gi|298729854|gb|EFI70399.1| flagellar biosynthesis regulator FlhF [Lysinibacillus fusiformis
           ZC1]
          Length = 398

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 123/326 (37%), Gaps = 46/326 (14%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR--------EELEDLLIRSDIGV 60
           E  S   +L K  A     L + +    +  +  D +         +EL + LI + IG 
Sbjct: 105 EDASMSEELRKEIADLK-SLMQSMHKKTTQAQYPDELLPFIEYLRQQELSEELITT-IGD 162

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +     E       A +++  +       L+ K L  L        S+    I ++G  
Sbjct: 163 ELFMHFKE-------ASEINFSQCKLIAKNLLRKKLEVLPVG---GLSYERKYINILGPT 212

Query: 121 GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           GVGKTT I K++ +   +   K+     DT+R AAI+QLK +A                 
Sbjct: 213 GVGKTTTIAKMAARAVLEKKKKIGFITTDTYRIAAIEQLKTYAGLL----------QAPV 262

Query: 180 ALAYEAFKQAQA----KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            +AY A    QA      +D++ IDTAGR +     +  + ++I+               
Sbjct: 263 EIAYNATDFEQAIQRLSHLDLVFIDTAGRNYKEVKYVDDLQRLIKF------DDHAESYL 316

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           VL  TT +  +  +            I TK+D T   G +I +++ +   + +   G+ +
Sbjct: 317 VLAMTTKERDMENIVDQFKQLPIQKFIFTKIDETNSIGTMINLMIKYNKGLAYYTNGQEV 376

Query: 296 N-DLEPFVAKDFSAVITGCLDYGEEK 320
             D+E          +      GEEK
Sbjct: 377 PEDIEEAD----LEAVLNLFFQGEEK 398


>gi|92114136|ref|YP_574064.1| GTP-binding signal recognition particle SRP54, G-protein
           [Chromohalobacter salexigens DSM 3043]
 gi|91797226|gb|ABE59365.1| GTP-binding signal recognition particle SRP54, G-protein
           [Chromohalobacter salexigens DSM 3043]
          Length = 729

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 104/270 (38%), Gaps = 29/270 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           L   LI +     + ++++++L  +       D  +        E    +L   +     
Sbjct: 108 LRQRLITAGFSARLVREMLDDLPEEFSQATPDDPGLLAWSRRQLESRLDVLDDEASMLEQ 167

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
                  V  +VG  GVGKTT   K + +      G  V L   D +R  A +QL+I+A 
Sbjct: 168 GG-----VFALVGPTGVGKTTTTAKFAARYVMRFGGDDVALVTTDDYRIGAHEQLRIYAR 222

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
               D        D   L        + +   ++I+DT G    +  +   I ++     
Sbjct: 223 LLGVDVHAVHHEDDLEGLLT------RLEGKRMVIVDTVGMSQRDQRVAGQIARL----- 271

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA------GTTGLIMTKMDGTARGGGLIP 277
                 P   L +L+A +  + L +V   +  A         G ++TK+D   R G ++ 
Sbjct: 272 -GGAARPVRRLLLLNAASHGDTLEEVVETYQRASRDAGAPLYGCLLTKVDEAPRLGAVLD 330

Query: 278 IVVTHKIPVYFLGVGEGIN-DLEPFVAKDF 306
           +V+ H++ +Y++  G+ +  D+    A D 
Sbjct: 331 VVMRHRLRLYYVSHGQRVPEDIRLAEAPDL 360


>gi|220934509|ref|YP_002513408.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995819|gb|ACL72421.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 424

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 16/200 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG +GVGKTT + KL+ +         + L   D +R  A  QL+ +         
Sbjct: 205 VIALVGPSGVGKTTTVAKLAARHVQRHGRGSIALVTTDAYRIGAYRQLQTFGQILGVPVH 264

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            ++ G     +      + +      + +DTAG    +  L   +  +  +         
Sbjct: 265 LAQTGRQLGDILLGLGDKQR------IFVDTAGMSQRDLRLAEEMAGLAAI-------PR 311

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L V+ A   Q  L +          TG ++TK+D  A  G ++  +    +P+ ++ 
Sbjct: 312 LRTLLVVAANAQQAVLEETFRAFGHLPLTGAVLTKVDEAASLGPVLSALSHGDLPLLYVS 371

Query: 291 VGEGIN-DLEPFVAKDFSAV 309
            G+ +  DL+P   +   + 
Sbjct: 372 EGQRVPEDLQPARVQRLVSR 391


>gi|145631517|ref|ZP_01787285.1| Signal recognition particle protein [Haemophilus influenzae R3021]
 gi|144982862|gb|EDJ90379.1| Signal recognition particle protein [Haemophilus influenzae R3021]
          Length = 274

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 6/117 (5%)

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRLH ++ +M  I ++   L       P   L  +DA TGQ+A    + F+     
Sbjct: 1   MDTAGRLHVDTEMMDEIKQVHAALN------PIETLFTVDAMTGQDAANTAKAFNEALPL 54

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           TG+I+TK+DG ARGG  + I      P+ FLGVGE    LEPF     ++ I G  D
Sbjct: 55  TGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGD 111


>gi|148704789|gb|EDL36736.1| signal recognition particle 54, isoform CRA_b [Mus musculus]
          Length = 286

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 6/143 (4%)

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
               D   +A E  ++ + +  +++I+DT+GR      L   + ++   ++      P +
Sbjct: 6   YTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQ------PDN 59

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           ++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+G G
Sbjct: 60  IVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG 119

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E I+D EPF  + F + + G  D
Sbjct: 120 EHIDDFEPFKTQPFISKLLGMGD 142


>gi|326519590|dbj|BAK00168.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 341

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 6/141 (4%)

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D   +A E  ++ + +K D++IIDT+GR    + L   + ++    K      P  V+ 
Sbjct: 13  EDPVKIAVEGLEKFRQEKSDLIIIDTSGRHMQEAALFEEMRQVAEATK------PDLVIF 66

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+D + GQ A  Q + F   A    +I+TK+DG A+GGG +  V   K PV F+G GE I
Sbjct: 67  VMDGSIGQAAFDQAQAFKQSASVGAVIVTKLDGHAKGGGALSAVAATKSPVIFIGTGEHI 126

Query: 296 NDLEPFVAKDFSAVITGCLDY 316
           +D + F  + F A + G  D 
Sbjct: 127 DDFDVFNVEPFVARLLGRGDL 147


>gi|167564490|ref|ZP_02357406.1| flagellar biosynthesis regulator FlhF [Burkholderia oklahomensis
           EO147]
          Length = 389

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 112/289 (38%), Gaps = 28/289 (9%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + +V+ L        +
Sbjct: 65  LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMVVDNLPEGVGYDTL 124

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137
                      ++   L  L          R  V  ++G  GVGKTT   KL+ +  M  
Sbjct: 125 DAAAD--WAHTVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMRF 180

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV L   D++R    +QL+I+           + G D           A+ +   ++
Sbjct: 181 GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHMV 234

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA- 256
           +IDT G    + ++   I  +           P   L +L+AT+  + L +V   +  A 
Sbjct: 235 LIDTIGMSQRDRMVSDQIAMLH------GADTPVQRLLLLNATSHGDTLNEVVQAYRSAA 288

Query: 257 --------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                      G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 289 GQPEAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 337


>gi|126653728|ref|ZP_01725646.1| flagellar biosynthesis regulator FlhF [Bacillus sp. B14905]
 gi|126589692|gb|EAZ83828.1| flagellar biosynthesis regulator FlhF [Bacillus sp. B14905]
          Length = 398

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 112/279 (40%), Gaps = 37/279 (13%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           EL + LI + IG  +     E       A +++  +       L+ K L  L  P     
Sbjct: 151 ELNEELITT-IGDELFMHFKE-------ASEINFSQCKMVTKNLLRKRLESL--PIG-GL 199

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           S+    I V+G  GVGKTT I K++ +   +   K+     DT+R AAI+QLK +A    
Sbjct: 200 SYERKYINVLGPTGVGKTTTIAKMAARAVLEKKKKIGFITTDTYRIAAIEQLKTYAGLL- 258

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQA----KKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                         +AY A    QA      +D++ IDTAGR +     +  + ++I+  
Sbjct: 259 ---------QAPVEIAYNATDFEQAIQRLSHLDLVFIDTAGRNYKEVKYVDDLQRLIKFD 309

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            + +         VL  TT +  +  +            I TK+D T   G ++ +++ +
Sbjct: 310 DQAES------YLVLAMTTKEKDMANIIDQFNQLPIEKFIFTKIDETNSIGTMLNLMIKY 363

Query: 283 KIPVYFLGVGEGIN-DLEPFVAKDFSAVITGCLDYGEEK 320
              + +   G+ +  D+E          +      GEEK
Sbjct: 364 NKGLAYYTNGQEVPEDIEEAD----LEAVLNLFFQGEEK 398


>gi|119586297|gb|EAW65893.1| hCG2033479, isoform CRA_c [Homo sapiens]
          Length = 177

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 76/160 (47%), Gaps = 10/160 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +      G K  L   DTFR+ A DQLK  A +    F  
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYG 161


>gi|167587838|ref|ZP_02380226.1| flagellar biosynthesis regulator FlhF [Burkholderia ubonensis Bu]
          Length = 365

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 103/260 (39%), Gaps = 27/260 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L       + + ++       ++   L  L         
Sbjct: 70  LTKHLFAAGFSAQLVRMMVDNLPQGE--GEQTFEQAAEWAQSVLESNLPVLDSE--EALM 125

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 126 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 185

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D           ++ +   +++IDT G    +  +   I  +        
Sbjct: 186 VPVHAVKDAGDLQ------LALSELRNKHIVLIDTIGMSQRDRAVSDQIAMLH------G 233

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFH---------AVAGTTGLIMTKMDGTARGGGLIP 277
            + P   L +L+AT+  + L +V   +         A A   G I+TK+D     GG++ 
Sbjct: 234 ANTPVQRLLLLNATSHGDTLNEVVQAYRSAAGHPDAASAELAGCILTKLDEATHLGGVLD 293

Query: 278 IVVTHKIPVYFLGVGEGIND 297
            V+ +K+PV+++  G+ + +
Sbjct: 294 TVIRYKLPVHYVSTGQKVPE 313


>gi|194015091|ref|ZP_03053708.1| flagellar biosynthetic protein FlhF [Bacillus pumilus ATCC 7061]
 gi|194014117|gb|EDW23682.1| flagellar biosynthetic protein FlhF [Bacillus pumilus ATCC 7061]
          Length = 371

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 103/250 (41%), Gaps = 17/250 (6%)

Query: 67  VEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVG 123
           +++++     K +  +  + +  + + + + L  +      D    R   I++ G  G G
Sbjct: 133 LDDVIRDECLKGLLTKGAVKEDQIQKELEQQLTDMLPAHTSDEPMIRSKYIVLFGSTGAG 192

Query: 124 KTTVIGKLSKKMSDAG-LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT I KL+ K +     K+     DT+R AAI+QLK +A+  +A         D    A
Sbjct: 193 KTTTIAKLAAKTAIQKQKKIAFITTDTYRIAAIEQLKTYAELLNAPLEVCYSREDFVK-A 251

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            E FK+      D + +DTAGR       +  +  +I   + +          V+ AT+ 
Sbjct: 252 QETFKE-----YDHIFVDTAGRNFKEEAYIKELTDIIPFNESIQS------FLVMSATSK 300

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPF 301
              ++ +            I TK+D T   G +  I+   +I + FL  G+ +  D+   
Sbjct: 301 YQDMKAMVKRFEHVPIDQFIFTKVDETDTMGTIFQIIADSQIGLGFLTNGQNVPEDILEG 360

Query: 302 VAKDFSAVIT 311
              + + ++ 
Sbjct: 361 SPLELTRMVL 370


>gi|302338098|ref|YP_003803304.1| flagellar biosynthetic protein FlhF [Spirochaeta smaragdinae DSM
           11293]
 gi|301635283|gb|ADK80710.1| flagellar biosynthetic protein FlhF [Spirochaeta smaragdinae DSM
           11293]
          Length = 401

 Score =  131 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 124/324 (38%), Gaps = 40/324 (12%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVR----------EELED 51
                A E    +  +      T  +L + +  +    ++++G            E++E 
Sbjct: 63  KKSDPADEKKKILESVKG--EKTLQQLLDEVRGL--REKIEEGPYPVKAEKHQSIEKIER 118

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS--- 108
           LL  ++        +VE L  +     +   +++ D      K+L  + +          
Sbjct: 119 LLSENEFTYTYITAMVERLRKELSVDQLEDFQLVQD------KVLGWIMETILLTPRTGQ 172

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMS-----DAGLKVMLAAGDTFRSAAIDQLKIWAD 163
             P V++++G  GVGKTT I K++   S     +    V L   D +R  A  Q++ + D
Sbjct: 173 DGPQVMILIGPTGVGKTTTIAKMAAIHSLGTKGEKQKSVRLITIDNYRIGARQQIETYGD 232

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                  C E   +         +    K  D++++DT G+   + + +A + +M+    
Sbjct: 233 IMGVPVSCVETYQELQK------QVLIYKDTDLVLVDTIGKSPKDYVNLAKMREMLSACG 286

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                    V   L ATT  + ++ +       G + +++TK+D T R G +I  +   +
Sbjct: 287 TRA-----EVHLALSATTKASDVKDILAQFEPFGYSSVVLTKLDETMRIGNIISSLYEKR 341

Query: 284 IPVYFLGVGEGINDLEPFVAKDFS 307
             + ++  G+ + + +   A    
Sbjct: 342 KTLSYITNGQSVPE-DILQADRMV 364


>gi|83647841|ref|YP_436276.1| flagellar GTP-binding protein [Hahella chejuensis KCTC 2396]
 gi|83635884|gb|ABC31851.1| Flagellar GTP-binding protein [Hahella chejuensis KCTC 2396]
          Length = 432

 Score =  131 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 99/257 (38%), Gaps = 23/257 (8%)

Query: 64  QKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLS---KPFNWDFSHRPHVIL 115
           ++++E L      +++               E    ++  L+   K  N +  H+  V  
Sbjct: 161 RELIERLQEMGVFRELQSALTAKTDPRKGAQEQWRNLMARLAHGLKAENEELIHQRGVCA 220

Query: 116 VVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ++G  G GKTT + KL+ +        K+ L   D FR A+  QL+ +    +      +
Sbjct: 221 LLGPTGSGKTTTLAKLAARFVVHYGAEKLALITTDRFRVASQQQLQSFGRLLNVPVYVVD 280

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             +    L        +     ++++DTAG    +         +     R+        
Sbjct: 281 EENSLDDLLD------RLANKRLVLVDTAGLTPQDPNWERQQKDLKVTRHRI------RN 328

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             VL A      ++    ++ +   +G IMTK+D     G ++ + + +++PV ++  G+
Sbjct: 329 YLVLSAVNQPQVMKSTYHYYKMLELSGCIMTKLDEAFSLGEVLSMAILNRLPVAYVTDGQ 388

Query: 294 GI-NDLEPFVAKDFSAV 309
            I +D+ P  A    A 
Sbjct: 389 KIPDDIHPAKAHALVAR 405


>gi|91776298|ref|YP_546054.1| flagellar biosynthesis regulator FlhF [Methylobacillus flagellatus
           KT]
 gi|91710285|gb|ABE50213.1| GTP-binding signal recognition particle SRP54, G-domain
           [Methylobacillus flagellatus KT]
          Length = 536

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 119/307 (38%), Gaps = 31/307 (10%)

Query: 2   SNQKVASESLSWIRKLTKG--------FASTSLKLKEGITDII-SSRRLDDGVREELEDL 52
           S +   SE      +L +           S    ++  +T+I  ++ +  D V+  +   
Sbjct: 129 SREHAGSEQPGQ-DRLAQRELAHMMQELRSMRGAIESQLTEITWANIQQRDPVKSNILGK 187

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           +I +     +A++I E++       D S    +  +  +I   +  +S            
Sbjct: 188 MISAGFSAGLARQIAEKV-----PADHSETNAMKWLQNVISNNIHTISDEQQILDQGG-- 240

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +  +VG  GVGKTT   KL+ +        K+ L   D++R    +QL+I+         
Sbjct: 241 IYALVGPTGVGKTTTTAKLAARFVMKHGPRKLALITTDSYRIGGHEQLRIYGKILGVMVH 300

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +        A       + K    ++IDT G    + ++   I  + +         P
Sbjct: 301 AVKDE------ADLRIALNELKGKHTILIDTVGVSQRDRMVAEQIAMLSKT------GLP 348

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              +  ++AT+    L  V   +   G  G I+TK+D  A  G ++ I++  ++ +Y++ 
Sbjct: 349 IKKILCMNATSSGETLVDVMDVYKRYGLDGGIITKLDEAASIGSVLDIIIRERLKLYYVA 408

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 409 NGQRVPE 415


>gi|114332397|ref|YP_748619.1| flagellar biosynthesis regulator FlhF [Nitrosomonas eutropha C91]
 gi|114309411|gb|ABI60654.1| GTP-binding signal recognition particle SRP54, G- domain
           [Nitrosomonas eutropha C91]
          Length = 423

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 108/264 (40%), Gaps = 23/264 (8%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
             L+ +     +++ ++E+L       D   ++ L     L+   L         +   +
Sbjct: 139 RTLLSAGFSPLLSRHLLEKL-----PADRDFEQSLKKTISLLTLNL---RTATGDEIIEQ 190

Query: 111 PHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             V  ++G  GVGKTT   KL+ +  +     KV L   D++R    +QL+I+       
Sbjct: 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVS 250

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               +   D   + +E       +   +++IDT G    + +L   I  + +   ++   
Sbjct: 251 VRSIKDIEDLQLMLHE------LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTKI--- 301

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
                L +L+AT+  + L +V   +      G I+TK+D +A  G  +  ++  K+ +++
Sbjct: 302 ---KHLLLLNATSSGDTLDEVISAYQKHSIHGCIITKVDESASLGIALDAIIRRKLVLHY 358

Query: 289 LGVGEGIN-DLEPFVAKDFSAVIT 311
           +  G+ +  DL    ++     I 
Sbjct: 359 VTNGQKVPEDLHEASSRYLLHRIF 382


>gi|152975185|ref|YP_001374702.1| flagellar biosynthesis regulator FlhF [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023937|gb|ABS21707.1| GTP-binding signal recognition particle SRP54 G- domain [Bacillus
           cytotoxicus NVH 391-98]
          Length = 434

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 99/250 (39%), Gaps = 16/250 (6%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVG 123
            +     K   K      +  +  E+I  +L  +   F  +  F      I ++G  GVG
Sbjct: 194 FINAYAEKMKMKFKHATMITEE--EVITFILEDMESHFYTENIFEKDVQTIALIGPTGVG 251

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT I K++ ++      V     D  R   + QL+ +     A+ +         A   
Sbjct: 252 KTTTIAKMAWQLHGQKKTVGFITTDHSRIGTVQQLQEYVKAIGAEVIAVRD----EAAME 307

Query: 184 EAFKQAQAK-KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            A    + + ++D + IDTAG+ +  +  +A    MI ++KR++P    S+   L A+  
Sbjct: 308 RALTYFKEEVRMDYIFIDTAGQNYRTAETVAE---MIEMMKRVNP---DSICLTLSASMK 361

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPF 301
              + ++          G+I TK D TA  G L+ I      P+  +  G+ +   +   
Sbjct: 362 SKDMIEIITNFKEIHIDGIIFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQHIHIA 421

Query: 302 VAKDFSAVIT 311
            A+  +  + 
Sbjct: 422 TAEHLAKQML 431


>gi|119586299|gb|EAW65895.1| hCG2033479, isoform CRA_e [Homo sapiens]
          Length = 341

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 77/162 (47%), Gaps = 10/162 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +      G K  L   DTFR+ A DQLK  A +    F   +
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGGQ 163


>gi|221202385|ref|ZP_03575418.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans
           CGD2M]
 gi|221208976|ref|ZP_03581972.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans CGD2]
 gi|221171098|gb|EEE03549.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans CGD2]
 gi|221177799|gb|EEE10213.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans
           CGD2M]
          Length = 590

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 102/270 (37%), Gaps = 37/270 (13%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L     A+  +    L     ++   L  L         
Sbjct: 285 LSKHLFAAGFSAQLVRMLVDRLPAGDGAQ--TFDAALEWAQSVLAANLPVLGSE--DALM 340

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 341 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 400

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D       +   ++ +   +++IDT G    +  +   I  +        
Sbjct: 401 VPVHAVKDAGDL------SLALSELRNKHIVLIDTIGMSQRDRAVSDQIAMLH------G 448

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG-------------------TTGLIMTKMD 267
              P   L +L+AT+  + L +V   +  AG                     G I+TK+D
Sbjct: 449 ASTPVQRLLLLNATSHGDTLNEVVQAYRSAGDRADLAGPDLAGPDLAGPDLAGCILTKLD 508

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                GG +  V+ +K+PV+++  G+ + +
Sbjct: 509 EATHLGGALDTVIRYKLPVHYVSTGQKVPE 538


>gi|119586298|gb|EAW65894.1| hCG2033479, isoform CRA_d [Homo sapiens]
          Length = 337

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 77/162 (47%), Gaps = 10/162 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + +    
Sbjct: 3   LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDL 62

Query: 73  KRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +  A  ++ ++++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 63  EEMASGLNKRKMIQHAVFKELVKLVDPGVKAWT-PTKGKQNVIMFVGLQGSGKTTTCSKL 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +      G K  L   DTFR+ A DQLK  A +    F   +
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGGQ 163


>gi|327441035|dbj|BAK17400.1| flagellar GTP-binding protein [Solibacillus silvestris StLB046]
          Length = 396

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 19/247 (7%)

Query: 64  QKIVEELLTK--RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            KI +EL      + K ++   +     + + K L  L  P +   S+    I V+G  G
Sbjct: 151 TKISDELFMYYNEHGKQMTWNEMQEVAKDYLRKELYDL--PIS-GISYEKKYINVLGPTG 207

Query: 122 VGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKTT I K++ +   +   K+     DT+R AAI+QLK +A    A     E+  +   
Sbjct: 208 VGKTTTIAKMAARAVLEKKKKIGFITTDTYRIAAIEQLKTYAALLQAPV---EVVYNPTD 264

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
            A EA ++     +D++ IDTAGR +  +  +  +  +I+  ++++         VL  T
Sbjct: 265 YA-EALQKF--DHLDLIFIDTAGRNYKEAKYVDDLKSLIQFSEQVES------YLVLSLT 315

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLE 299
           + Q  L  +    A       I TK+D T   G +  +++ +   + +   G+ +  D+E
Sbjct: 316 SKQKDLESIIEQFANLHIEKFIFTKLDETNSIGTMFNLMIKYNKGLAYYTNGQEVPEDIE 375

Query: 300 PFVAKDF 306
              + + 
Sbjct: 376 QPNSDNL 382


>gi|4538523|emb|CAB39371.1| ftsY [Corynebacterium glutamicum]
          Length = 135

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 87/136 (63%), Gaps = 2/136 (1%)

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A++A  +   ++ DV+++DTAGRLH ++ LM  +GK+ RV+++        VL V
Sbjct: 2   DPASIAFDAVAKGVERQADVVLVDTAGRLHTSTGLMDQLGKVKRVVEKK--AVVDEVLLV 59

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN ++Q  +F  V   TG+++TK+DGTA+GG +  +     +PV  +G+GEG +
Sbjct: 60  LDATVGQNGMQQARIFREVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGAD 119

Query: 297 DLEPFVAKDFSAVITG 312
           DL PF  + F   + G
Sbjct: 120 DLAPFEVEGFVDALLG 135


>gi|306820136|ref|ZP_07453784.1| flagellar biosynthesis protein FlhF [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551914|gb|EFM39857.1| flagellar biosynthesis protein FlhF [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 433

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/256 (24%), Positives = 114/256 (44%), Gaps = 23/256 (8%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           I   ++++IV  L  K            +   +L +++L   +     DFS R    + +
Sbjct: 196 ISYELSKEIVVNLKKKGKN---------FRYDDLKNEVLDMFADYIKVDFSKRHKYYVFI 246

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           G  GVGKTT + K++ K +    K +     DT+R +A++QLK +A+        S    
Sbjct: 247 GSTGVGKTTTLAKIASKETIENKKKIGFLTLDTYRISAVEQLKTYAEIL------SSPIE 300

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
            A  +   +F   +    D++ IDTAGR HNN      I  + +VL  ++      V  V
Sbjct: 301 VAYEIQDLSFAIDRLSNRDMVFIDTAGRSHNNKS---QIDDLKKVLTDIE---DKKVFLV 354

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI- 295
           L A T  + +  +   ++      +I+TK D T R G ++ I+      + ++  G+ + 
Sbjct: 355 LSANTSIDDIYDIIDTYSFVDEYEIIVTKTDETGRMGNILDIIKKTGKNISYITFGQNVP 414

Query: 296 NDLEPFVAKDFSAVIT 311
           +D+E F    + + + 
Sbjct: 415 DDIEKFNMGKYVSELI 430


>gi|119570967|gb|EAW50582.1| hCG2039249 [Homo sapiens]
          Length = 168

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 6/147 (4%)

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            + S    D   +A E  ++ + +  +++I+DT+GR      L   + ++   ++     
Sbjct: 2   MLYSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ----- 56

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F
Sbjct: 57  -PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIF 115

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE I+D EPF  + F + + G  D
Sbjct: 116 IGTGEHIDDFEPFKTQPFISKLLGMGD 142


>gi|237653598|ref|YP_002889912.1| flagellar biosynthesis regulator FlhF [Thauera sp. MZ1T]
 gi|237624845|gb|ACR01535.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thauera sp. MZ1T]
          Length = 489

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 95/251 (37%), Gaps = 27/251 (10%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP--FNWDFSHR 110
           L+ +    A+A+K+VE +       +           E +   L  L +    + D   R
Sbjct: 223 LLEAGFSAAIARKLVEAVHEDADRIE---------AREAVGAALDRLMRACASDEDLLDR 273

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             V  +VG  GVGKTT   KL+ +        ++ L   D +R  A +QL+I+       
Sbjct: 274 GGVYALVGPTGVGKTTTTAKLAARCVVRHGAGRLALITTDGYRIGAQEQLRIYGRILGVP 333

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                  +D           A  +   +++IDT G    + ++      +          
Sbjct: 334 VFSVRDAADLRQTL------AGLRNKHMVLIDTMGMSQRDRMVAEQAAML-------SGA 380

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
                L +L+AT   + L  V   +A     G I TK+D  A     + + V H++ + +
Sbjct: 381 GDVRRLLLLNATARGDTLDDVVRAYAGGDLAGCIFTKVDEAASLAPALDVAVRHELDIRY 440

Query: 289 LGVGEGIN-DL 298
           L  G+ +  DL
Sbjct: 441 LTNGQRVPEDL 451


>gi|221214211|ref|ZP_03587183.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans CGD1]
 gi|221165866|gb|EED98340.1| flagellar biosynthetic protein FlhF [Burkholderia multivorans CGD1]
          Length = 597

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 102/270 (37%), Gaps = 37/270 (13%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L  +     + + +V+ L     A+  +    L     ++   L  L         
Sbjct: 292 LSKHLFAAGFSAQLVRMLVDRLPAGDGAQ--TFDAALEWAQSVLAANLPVLGSE--DALM 347

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            R  V  ++G  GVGKTT   KL+ +  M     KV L   D++R    +QL+I+     
Sbjct: 348 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 407

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +   D       +   ++ +   +++IDT G    +  +   I  +        
Sbjct: 408 VPVHAVKDAGDL------SLALSELRNKHIVLIDTIGMSQRDRAVSDQIAMLH------G 455

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAG-------------------TTGLIMTKMD 267
              P   L +L+AT+  + L +V   +  AG                     G I+TK+D
Sbjct: 456 ASTPVQRLLLLNATSHGDTLNEVVQAYRSAGDRADLAGPDLAGPDLAGPDLAGCILTKLD 515

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                GG +  V+ +K+PV+++  G+ + +
Sbjct: 516 EATHLGGALDTVIRYKLPVHYVSTGQKVPE 545


>gi|167571640|ref|ZP_02364514.1| flagellar biosynthesis regulator FlhF [Burkholderia oklahomensis
           C6786]
          Length = 383

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 112/289 (38%), Gaps = 28/289 (9%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++E    ++ + R+  + V   L   L  +     + + +V+ L        +
Sbjct: 59  LGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMVVDNLPEGVGYDTL 118

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137
                      ++   L  L          R  V  ++G  GVGKTT   KL+ +  M  
Sbjct: 119 DAAAD--WAHTVLAANLPVLDSE--DALMERGGVFALMGPTGVGKTTTTAKLAARCVMRF 174

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              KV L   D++R    +QL+I+           + G D           A+ +   ++
Sbjct: 175 GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------LALAELRNKHMV 228

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA- 256
           +IDT G    + ++   I  +           P   L +L+AT+  + L +V   +  A 
Sbjct: 229 LIDTIGMSQRDRMVSDQIAMLY------GADTPVQRLLLLNATSHGDTLNEVVQAYRSAA 282

Query: 257 --------GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                      G I+TK+D  +  GG++  V+ +K+PV+++  G+ + +
Sbjct: 283 GQPEAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 331


>gi|251772427|gb|EES52994.1| flagellar biosynthesis protein FlhF [Leptospirillum
           ferrodiazotrophum]
          Length = 396

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 112/268 (41%), Gaps = 18/268 (6%)

Query: 47  EELEDLLIRSDIGVAVAQKIVE--ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF- 103
           EE E +L+         Q+I+E   LL+ +  +    Q  +  + + +    + ++    
Sbjct: 126 EEAEKVLVEGGFSEQDRQEILEGFRLLSYQPVEWTPSQ--VRSLLQFLVSQKIDVTGSLF 183

Query: 104 -NWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
                  RP V+L VG  GVGKTT + K+ +  ++    +V L   DT+R  A++QL+I+
Sbjct: 184 AAEGRPGRPKVVLFVGPTGVGKTTTVAKIGAGLVARHKKRVGLLNLDTYRIGAVEQLRIY 243

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            D        +   S  +          +  + DV+++D+AGR          +   + V
Sbjct: 244 GDLMGVPVEVANTASRLSG------AIGRLSENDVILVDSAGRS---DGGGEELLPFLSV 294

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           L         SV+ V+ A      L +    +       L++TK+D T   G L  ++  
Sbjct: 295 LSS-GQEYDLSVVLVVSAGQKARDLERTATAYQKIRPEALVVTKIDETGALGSLYGLLAH 353

Query: 282 HKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
            ++PV ++  G+ +  D+E       + 
Sbjct: 354 GRLPVSYVTTGQKVPEDIEVAHGGRLAE 381


>gi|89061728|ref|XP_944820.1| PREDICTED: signal recognition particle 54 kDa protein-like [Homo
           sapiens]
          Length = 168

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 6/147 (4%)

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            + S    D   +A E  ++ + +  +++I+DT+GR      L   + ++   ++     
Sbjct: 1   MLYSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQ----- 55

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F
Sbjct: 56  -PDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIF 114

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE I+D EPF  + F + + G  D
Sbjct: 115 IGTGEHIDDFEPFKTQPFISKLLGMGD 141


>gi|71280427|ref|YP_268259.1| flagellar biosynthesis regulator FlhF [Colwellia psychrerythraea
           34H]
 gi|71146167|gb|AAZ26640.1| flagellar biosynthetic protein FlhF [Colwellia psychrerythraea 34H]
          Length = 513

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 118/297 (39%), Gaps = 22/297 (7%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
             K+ +  AS    L+  ++ ++     D   ++    +L+   + + + ++I +++   
Sbjct: 207 FAKMQQEMASIRSLLEHQVSGLMWQ---DMAQKDPQRAVLVNRLLALGLNEQIADQIAGY 263

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              +    +  L        +++         D  +R  V+ +VG  GVGKTT I KL+ 
Sbjct: 264 VPEQSHEKEAWLQA-----TQLISQQINTTQNDIINRGGVVALVGPTGVGKTTTIAKLAA 318

Query: 134 KMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
             S      +V L + DTFR A  +QL  +          ++       L  +  K+   
Sbjct: 319 GFSQVHGSDQVALISTDTFRIAGFEQLATYGKIIGCQVSLAKDSQALDILLQQYSKKK-- 376

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
               +++IDTAG    +  L   +  ++      +         VL A T Q  +++   
Sbjct: 377 ----LILIDTAGMGQRDMRLAEQLTALVS-----NARVRIRNYLVLAANTQQGVMQENVD 427

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFS 307
                  +G I TK+D +   G +I   + + +P+ +L  G+ +  D++   A+   
Sbjct: 428 RFKKVPLSGCIYTKLDESISIGEIITTSIQNGLPIGYLTDGQRVPEDIKVANAEKLV 484


>gi|238927444|ref|ZP_04659204.1| flagellar biosynthesis protein FlhF [Selenomonas flueggei ATCC
           43531]
 gi|238884726|gb|EEQ48364.1| flagellar biosynthesis protein FlhF [Selenomonas flueggei ATCC
           43531]
          Length = 453

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 121/290 (41%), Gaps = 24/290 (8%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
           ++K  +  +++  +  + V   + D L R D+      ++ E+L  K    D ++  +  
Sbjct: 181 QMKTMLASMMAESKPKEIV--SIRDALRRQDVR----DELCEDLSGKIPIADANLDSLDP 234

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV---IGKLSKKM-SDAGLKV 142
             +E++   L  + K F        H   V    G         + K++     +  LK 
Sbjct: 235 RATEVLAGYLAQVMK-FTDGLHPGTHGARVFAFIGTTGVGKTTTLAKIAAHFVLEQNLKG 293

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
            L   DT+R +A++QLK +A+            +D       A  + ++K  D +++DTA
Sbjct: 294 ALITADTYRISAVEQLKKYAEILGLPVEVVYSAADLRK----AITRHRSK--DFILVDTA 347

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           GR   N   M  +   +    R++ H       V+ ATT +    Q+    A      +I
Sbjct: 348 GRSQYNEFQMDELKDFLAAHPRMEKH------LVVSATTKEQDAAQIIERFAPCHPDRII 401

Query: 263 MTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
            TK D T   G ++ ++  H +P+ FL  G+ + +D+ P  A+  + ++ 
Sbjct: 402 FTKTDETQTVGMVLNLLADHSLPLSFLSNGQSVPDDIIPATAERLAELLL 451


>gi|152980692|ref|YP_001353775.1| flagellar biosynthesis regulator FlhF [Janthinobacterium sp.
           Marseille]
 gi|151280769|gb|ABR89179.1| FlhF flagellar biosynthesis protein [Janthinobacterium sp.
           Marseille]
          Length = 421

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 101/264 (38%), Gaps = 23/264 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L ++L  +    ++A+ ++  L         S Q  +  +  ++ + L  +      +  
Sbjct: 138 LREML-AAGFSASLARYLIARL-----PAGASNQSGMEWIKSILARNLATIGDEN--EIL 189

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +  V  +VG  GVGKTT   KL+ +  M     K+ L   D +R    +QL+I+     
Sbjct: 190 EKGGVYALVGPTGVGKTTTTAKLAARCVMRHGPSKLALITTDGYRIGGYEQLRIYGKILG 249

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +        A       + K    ++IDT G    + ++   I  +        
Sbjct: 250 VMVHSVKDE------ADLRIALDELKGKHTVLIDTVGVSQRDQMVADQIAML------TG 297

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                  L  L+AT+    L +V   +   G  G I+TK+D  A  G  + +V+  K+ +
Sbjct: 298 AGDQVKRLLCLNATSTGETLNEVVRSYMGDGLAGCILTKLDEAATIGSALDVVIRQKLNL 357

Query: 287 YFLGVGEGIN-DLEPFVAKDFSAV 309
           Y++  G+ +  DL     +     
Sbjct: 358 YYVANGQRVPEDLHVANQQYLVDR 381


>gi|30250408|ref|NP_842478.1| flagellar biosynthesis regulator FlhF [Nitrosomonas europaea ATCC
           19718]
 gi|30181203|emb|CAD86401.1| possible flhF; flagellar biosynthetic protein FlhF [Nitrosomonas
           europaea ATCC 19718]
          Length = 419

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 106/264 (40%), Gaps = 23/264 (8%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
             L+ +     +++ ++E+L   R             + + I  + + L      +   +
Sbjct: 133 RTLLSAGFSPLLSRHLLEKLPADR--------DFEQSLKKTIALLTLNLRTTAGDEIIEQ 184

Query: 111 PHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             +  ++G  GVGKTT   KL+ +  +     KV L   D++R    +QL+I+       
Sbjct: 185 GGIYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGIS 244

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               +   D   + +E       +   +++IDT G    + +L   I  + +        
Sbjct: 245 VRSIKDIDDLQLMLHE------LRGKHMVLIDTVGMSQRDQMLAEQITMLSQC------G 292

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
                L +L+AT+  + L +V   +   G  G I+TK+D  A  G  +  V+  K+ +++
Sbjct: 293 TEVKHLLLLNATSSGDTLDEVISAYQQHGIHGCIITKVDEAASLGIALDAVIRRKLVLHY 352

Query: 289 LGVGEGIN-DLEPFVAKDFSAVIT 311
           +  G+ +  DL    ++     I 
Sbjct: 353 VTNGQKVPEDLHEANSRYLLHRIF 376


>gi|323705426|ref|ZP_08117001.1| flagellar biosynthetic protein FlhF [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535328|gb|EGB25104.1| flagellar biosynthetic protein FlhF [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 337

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 108/261 (41%), Gaps = 19/261 (7%)

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSV--QRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           + D+   +  + V++ L+K     ++      L  + + I   + P  K    +   R  
Sbjct: 89  KKDLAYELVSRGVDDKLSKILTDGINEVSDSNLETLQKRIVNFIGPPKKITGLNEKKRA- 147

Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
             + +G  GVGKTT I K++   +     KV+L   D FR A  +QLKI+ +      + 
Sbjct: 148 --VFIGPTGVGKTTTIAKIASNLILREKKKVLLITADIFRIAGAEQLKIYGEILGVPVMV 205

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                D   L      + +  K DV++IDTAGR H +S  M  +   ++           
Sbjct: 206 VNNIFDLNRL------EGEISKYDVVLIDTAGRSHTDSKKMQELKTFLQY------GTYD 253

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V   L A T  + ++++   +       L+ TK+D T     ++  +   K  V ++  
Sbjct: 254 EVYLCLSAATKNSDIKKIIKSYDFIDEYNLLFTKLDETDNYSVILNSIYYSKKSVSYVTD 313

Query: 292 GEGI-NDLEPFVAKDFSAVIT 311
           G+ + +D+    +K  +  I 
Sbjct: 314 GQMVPDDISLADSKMIAQNIL 334


>gi|149051248|gb|EDM03421.1| signal recognition particle 54 [Rattus norvegicus]
          Length = 278

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 6/140 (4%)

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D   +A E  ++ + +  +++I+DT+GR      L   + ++   ++      P +++ 
Sbjct: 1   MDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQ------PDNIVY 54

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F+G GE I
Sbjct: 55  VMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHI 114

Query: 296 NDLEPFVAKDFSAVITGCLD 315
           +D EPF  + F + + G  D
Sbjct: 115 DDFEPFKTQPFISKLLGMGD 134


>gi|327481250|gb|AEA84560.1| flagellar biosynthesis regulator FlhF [Pseudomonas stutzeri DSM
           4166]
          Length = 430

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 93/235 (39%), Gaps = 19/235 (8%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++   LL K  A   + Q     ++ L   + +  ++P          VI +VG  GVGK
Sbjct: 169 ELSRSLLDKVAAITDARQAWRMVLAHLAQAIKVSKNEPLEEGG-----VIALVGPAGVGK 223

Query: 125 TTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           TT + KL+ +         + LA+ D +R  A +QLK          +  +     +   
Sbjct: 224 TTTLAKLAARYVLKYGAQSIALASMDNYRIGAQEQLKTLGRILDVPVLQLDPSEPLSK-- 281

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                 A   +  V++IDTAG   ++  L   +  +       D         VL AT+ 
Sbjct: 282 ----SLASLARKRVILIDTAGLPASDPTLRMQLQAL------SDKGVKSKNYLVLAATSQ 331

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
              L+     +   G  G I+TK+D     G ++ + ++  +P+ +L  G  I D
Sbjct: 332 SQVLKAAWHNYRRCGLAGCILTKLDEAGSLGDVLGLTISQHLPIAYLADGPRIPD 386


>gi|146282910|ref|YP_001173063.1| flagellar biosynthesis regulator FlhF [Pseudomonas stutzeri A1501]
 gi|145571115|gb|ABP80221.1| flagellar biosynthesis protein FlhF [Pseudomonas stutzeri A1501]
          Length = 430

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 93/235 (39%), Gaps = 19/235 (8%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++   LL K  A   + Q     ++ L   + +  ++P          VI +VG  GVGK
Sbjct: 169 ELSRSLLDKVAAITDARQAWRMVLAHLAQAIKVSKNEPLEEGG-----VIALVGPAGVGK 223

Query: 125 TTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           TT + KL+ +         + LA+ D +R  A +QLK          +  +     +   
Sbjct: 224 TTTLAKLAARYVLKYGAQSIALASMDNYRIGAQEQLKTLGRILDVPVLQLDPSEPLSK-- 281

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                 A   +  V++IDTAG   ++  L   +  +       D         VL AT+ 
Sbjct: 282 ----SLASLARKRVILIDTAGLPASDPTLRMQLQAL------SDKGVKSKNYLVLAATSQ 331

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
              L+     +   G  G I+TK+D     G ++ + ++  +P+ +L  G  I D
Sbjct: 332 SQVLKAAWHNYRRCGLAGCILTKLDEAGSLGDVLGLTISQHLPIAYLADGPRIPD 386


>gi|116626503|ref|YP_828659.1| GTP-binding signal recognition particle [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229665|gb|ABJ88374.1| GTP-binding signal recognition particle SRP54, G- domain
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 389

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 21/269 (7%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSH 109
            L  +D+   +A+++V+    +   +   V R    +  +     +    S  F  D + 
Sbjct: 122 ALTAADVSAELAREVVQAAGNRLNGQRAPVNRTPQRIDGAAFERALAEEFSSRFTVDATL 181

Query: 110 R-----PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWAD 163
                 PH+  +VG  G GKTT + KL+     A  + +L  + DT+R AA +QL+ +A 
Sbjct: 182 GRGPAEPHIAALVGPPGSGKTTTLVKLAIHFGLAARRPVLLLSMDTYRVAAAEQLRSYAA 241

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                F   E  +  A    +A ++   +  ++++IDT G         A  G  +    
Sbjct: 242 ILGVGFQVLETVNSLA----QAIEE--NRGKELILIDTPGLGLGELEDSASFGHFLSTRS 295

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            +D H       VL A+     L ++     V     L+ T++D T   G +        
Sbjct: 296 DIDTH------LVLSASMKPADLSRMVDAFGVLRPQHLLFTRLDETGSYGQIFSEAARTG 349

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
            P+ F   G+ I  DLE   ++    ++ 
Sbjct: 350 KPLSFFTHGQRIPEDLEAASSERLLDLVL 378


>gi|116331223|ref|YP_800941.1| flagellar biosynthesis regulator FlhF [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116124912|gb|ABJ76183.1| Endoflagellar biosynthesis protein, GTP-binding [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 433

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 117/301 (38%), Gaps = 20/301 (6%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LS+ ++L +        L +  T I+  ++  D     L + L+R  +     ++++ ++
Sbjct: 129 LSFEKELFE-----RNPLSKKETFIVRGKK--DSPLSRLGERLVREGMSQGYVEEVLSKI 181

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +    D      + +  ++++ + +      F     ++  V+ +VG  G GKTT I 
Sbjct: 182 EERLSPIDQGRNHSVSERATQVLVERVSVDPDLFQGTGKNQRKVVFLVGPTGSGKTTSIA 241

Query: 130 KLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+ K     G  V L   D +R AAI+QLK +AD     F   +             + 
Sbjct: 242 KLAAKYFLHMGRSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFK-------ET 294

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
                 ++++IDTAG  H N   +  +          D       L VL A +  +    
Sbjct: 295 LARDGSELILIDTAGYSHRNLEQLERMHSFHSCFGERDS---VENLLVLSAISSYHHTNT 351

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFS 307
           V   +       +++TK+D     G  + +  T+     +  VG+ +  D+ P      +
Sbjct: 352 VLKAYESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYFSVGQEVPFDILPADKNLMA 411

Query: 308 A 308
            
Sbjct: 412 E 412


>gi|116328493|ref|YP_798213.1| flagellar biosynthesis regulator FlhF [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121237|gb|ABJ79280.1| Endoflagellar biosynthesis protein, GTP-binding [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 433

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 117/301 (38%), Gaps = 20/301 (6%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           LS+ ++L +        L +  T I+  ++  D     L + L+R  +     ++++ ++
Sbjct: 129 LSFEKELFE-----RNPLSKKETFIVRGKK--DSPLSRLGERLVREGMSQGYVEEVLSKI 181

Query: 71  LTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +    D      + +  ++++ + +      F     ++  V+ +VG  G GKTT I 
Sbjct: 182 EERLSPIDQGRNHSVSERATQVLVERVSVDPDLFQGTGKNQRKVVFLVGPTGSGKTTSIA 241

Query: 130 KLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           KL+ K     G  V L   D +R AAI+QLK +AD     F   +             + 
Sbjct: 242 KLAAKYFLHMGRSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFK-------ET 294

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
                 ++++IDTAG  H N   +  +          D       L VL A +  +    
Sbjct: 295 LARDGSELILIDTAGYSHRNLEQLERMHSFHSCFGERDS---VENLLVLSAISSYHHTNT 351

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFS 307
           V   +       +++TK+D     G  + +  T+     +  VG+ +  D+ P      +
Sbjct: 352 VLKAYESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYFSVGQEVPFDILPADKNLMA 411

Query: 308 A 308
            
Sbjct: 412 E 412


>gi|152992634|ref|YP_001358355.1| flagellar biosynthesis protein FlhF [Sulfurovum sp. NBC37-1]
 gi|151424495|dbj|BAF71998.1| flagellar biosynthesis protein FlhF [Sulfurovum sp. NBC37-1]
          Length = 362

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 103/266 (38%), Gaps = 25/266 (9%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKD---------VSVQRVLYDVSELIHKML 96
            EE+ D L++           V++L  K+   +         +    V+ D   L+  +L
Sbjct: 87  LEEMRDGLLQKG-RFGTVADDVKKLFMKKGIAEQWLDGVLIPLIGTTVMDDAQLLVSYLL 145

Query: 97  MPLSKPFNWDFSH--RPHVILVVGVNGVGKTTVIGKLSKKMSD---AGLKVMLAAGDTFR 151
             + +             ++++VG  GVGKTT I KL+ + +       KV L   D+++
Sbjct: 146 EEIDETLKVKEEDLDHSKIMMLVGPTGVGKTTTIAKLAARYAYLLDRPYKVALINLDSYK 205

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
             AI+QL  +AD    +                  K       D++++DTAG    ++  
Sbjct: 206 VGAIEQLAHYADIMQIEHYSIASADAFGE------KIEALSSYDIILVDTAGMSPYDTQ- 258

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
                K I  +    P     V  VL AT     +  +    +      +I++K D T  
Sbjct: 259 --KFVKTIEFVNTKIP-KKIEVALVLAATVKYEDMEDIHENFSFLNLDSVIISKFDETKH 315

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGIND 297
            G L+  ++ + +P+ +   G+ + D
Sbjct: 316 FGTLLNFMLLYDLPMSYFSTGQEVPD 341


>gi|302037623|ref|YP_003797945.1| putative flagellar biosynthetic protein FlhF, GTP binding
           [Candidatus Nitrospira defluvii]
 gi|300605687|emb|CBK42020.1| putative Flagellar biosynthetic protein FlhF, GTP binding
           [Candidatus Nitrospira defluvii]
          Length = 427

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 103/264 (39%), Gaps = 19/264 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHR 110
           L+   +  A A+  + EL      +  S QR      +L+  +L+            +  
Sbjct: 148 LLAQGVEHATAEACLRELRETLVEQG-SAQRNSS--LQLLRTVLLDRVTTAGPLLSAAGE 204

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
             + L VG +GVGKT+ I KL+ +        V L   DT+R AA++ L+++A+    + 
Sbjct: 205 QKIALFVGPSGVGKTSTIAKLATQYGIVEQRSVALITMDTYRPAAVEHLRLYAEVLGIEL 264

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                 + +   A  A  QA+    ++++IDT G                R    L+   
Sbjct: 265 SV----AASCEEARAAIAQARE--AELILIDTTGFN------PYEPITAQRWRGLLNGAY 312

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P  V  VL A T    L              L+ TK+D TA  GG+        IP+ + 
Sbjct: 313 PMEVHLVLAAGTRVPDLVVSTSQCVDVPGLRLLFTKLDETAGYGGIFEATHRTGIPLSYW 372

Query: 290 GVGEGI-NDLEPFVAKDFSAVITG 312
           G G+ + +DL          ++ G
Sbjct: 373 GTGQRVPDDLVQAQVDRLGDLLLG 396


>gi|152989657|ref|YP_001349228.1| flagellar biosynthesis regulator FlhF [Pseudomonas aeruginosa PA7]
 gi|150964815|gb|ABR86840.1| flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa PA7]
          Length = 429

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 102/256 (39%), Gaps = 24/256 (9%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G+    ++ + LL +  A   + Q     ++ L   +  P   P +        V+ +V
Sbjct: 163 MGLPA--ELSKPLLERVAAVGDTRQAWRMLLAHLSRAVPTPDQDPLDAGG-----VLALV 215

Query: 118 GVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  G GKTT + K++ +         + L + D++R  A +Q+K      +      + G
Sbjct: 216 GPAGAGKTTTLAKMAARYVLKYGAQSLALVSMDSYRIGAQEQIKTLGRILNVPVTLVDPG 275

Query: 176 SDA-AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
                ALA  A K+       +L+IDTAG   ++  L   +  +        P       
Sbjct: 276 QSLIQALAPLARKR-------MLLIDTAGLPASDPALRMQLEAL------ASPSLNVKNY 322

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+  T+    LR     +   G  G IMTK+D     G  + + +  ++PV +L  G  
Sbjct: 323 LVMATTSQSQVLRSAYQTYRHCGLAGCIMTKLDEAGSLGESMALAIAQRLPVAYLADGPR 382

Query: 295 I-NDLEPFVAKDFSAV 309
           I +DL+   +    + 
Sbjct: 383 IPDDLQVARSHQLVSR 398


>gi|329575670|gb|EGG57197.1| SRP54-type protein, GTPase domain protein [Enterococcus faecalis
           TX1467]
          Length = 120

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/109 (54%), Positives = 76/109 (69%)

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGRL N   LM  + K+ RV++R  P APH VL V+DATTGQNA+ Q + F      
Sbjct: 1   MDTAGRLQNKVNLMKELEKIKRVIQREIPDAPHEVLLVVDATTGQNAMTQAKQFKETTNF 60

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           TGL++TK+DGTA+GG +I I     +PV  +G+GEGINDLEPF A DF+
Sbjct: 61  TGLVLTKLDGTAKGGIVIAIRNELHLPVKLVGLGEGINDLEPFNANDFA 109


>gi|330901773|gb|EGH33192.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 221

 Score =  129 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 16/178 (8%)

Query: 123 GKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GKTT + KL+ +         + L + D+FR  A +QLK      +      + G     
Sbjct: 13  GKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVTHIDPGQSLV- 71

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHAPHSVLQVLDA 239
              +A +    K+  V++IDTAG   ++  L   +  +  R +K  +         VL  
Sbjct: 72  ---QALEPLLRKR--VVLIDTAGLQASDPALRMQLESLAGRGIKSRN-------YLVLAT 119

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L  G  I D
Sbjct: 120 TSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPD 177


>gi|225552424|ref|ZP_03773364.1| flagellar biosynthesis protein FlhF [Borrelia sp. SV1]
 gi|225371422|gb|EEH00852.1| flagellar biosynthesis protein FlhF [Borrelia sp. SV1]
          Length = 388

 Score =  129 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 107/281 (38%), Gaps = 18/281 (6%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
               ++     ++ D+L  +D      + I E +  +    D+     + +   L     
Sbjct: 102 KKENINHPTITKIGDILRENDFSENYIKDINEFIKREFSLSDLDDYERVREDVVLYIAKT 161

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG----LKVMLAAGDTFRS 152
           +  S     +   R  V ++VG  GVGKTT I KL+      G    L + +   D +R 
Sbjct: 162 IKCSGSIIDNLKKR--VFILVGPTGVGKTTTIAKLAAIYGINGESKSLNIKIITIDNYRI 219

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A  Q++ + D         E   D         +   +K  D++++DT G+   + + +
Sbjct: 220 GAKKQIQTYGDIMGIPVRAIESFKDLKD------EITDSKDFDLILVDTIGKSPKDFMKL 273

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
           A + +++    R            + +TT  + ++++    +      +I TK+D T   
Sbjct: 274 AEMKELLNACGR-----DAEFHLAVSSTTKTSDVKEIFHQFSPFNYKTVIFTKVDETTCV 328

Query: 273 GGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDFSAVITG 312
           G LI ++   K  V ++  G+ +   +       F   I G
Sbjct: 329 GNLISLIYEMKKVVSYVTDGQIVPHNISVAEPLTFIRRING 369


>gi|187918144|ref|YP_001883707.1| flagellar biosynthesis regulator FlhF [Borrelia hermsii DAH]
 gi|119860992|gb|AAX16787.1| flagellar biosynthesis protein FlhF [Borrelia hermsii DAH]
          Length = 393

 Score =  129 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 125/325 (38%), Gaps = 30/325 (9%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGV---REE--------LEDL 52
            +  + ++   +  K   S   +    I D+I   + L + +   +EE        +ED+
Sbjct: 63  DIGQQQINIEEEKRKILQSIKKEESSSIEDVIKEVKSLKNELAHKKEEVNHPTILKIEDI 122

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L  +D   +  + I   +  +    D+     + D   +     +  S P   +   R  
Sbjct: 123 LRSNDFSESYIKDINNFIKKEFSLSDLDDYDKIKDSVIIYIAKTIKCSGPLIDNLKKR-- 180

Query: 113 VILVVGVNGVGKTTVIGKLSKKM----SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           + ++VG  GVGKTT I KL+        D  L + +   D +R  A  Q++ + D     
Sbjct: 181 IFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP 240

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E   D         +  Q+K  D+++IDT G+   + + +A + +++    R    
Sbjct: 241 VKAIESFKDLKE------EITQSKDFDLVLIDTIGKSPKDFMKLAEMKELLNACGR---- 290

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
                   + +TT    ++++    +      +I TK+D T   G LI ++   +  V +
Sbjct: 291 -DAEFHLAVSSTTKTADIKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIHEMRKEVSY 349

Query: 289 LGVGEGIND-LEPFVAKDFSAVITG 312
           +  G+ +   +       F   I G
Sbjct: 350 ITDGQIVPHNISIAEPLTFIKKING 374


>gi|241628780|ref|XP_002410011.1| signal recognition particle 54 kD protein, putative [Ixodes
           scapularis]
 gi|215503285|gb|EEC12779.1| signal recognition particle 54 kD protein, putative [Ixodes
           scapularis]
          Length = 196

 Score =  129 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 10/160 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +    I ++ + D + +E+   L+ +DI + + +++ E + +    
Sbjct: 37  LADLGRKITNALRSLSNATIINKEVLDSMLKEICTALLEADINIKLVKQLRENVRSAIDI 96

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                 ++ +R++   V + + K++ P  K +      + ++I+ VG+ G GKTT   KL
Sbjct: 97  DEMGAGLNKRRMIQSAVFKELIKLVDPGVKAWQ-PTKGKNNIIMFVGLQGSGKTTTCTKL 155

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +      G K  L   DTFR+ A DQLK  A +    F  
Sbjct: 156 AYHYLKKGWKTCLVCADTFRAGAFDQLKQNATKARIPFYG 195


>gi|306836410|ref|ZP_07469388.1| cell division protein FtsY [Corynebacterium accolens ATCC 49726]
 gi|304567770|gb|EFM43357.1| cell division protein FtsY [Corynebacterium accolens ATCC 49726]
          Length = 136

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/136 (40%), Positives = 86/136 (63%), Gaps = 2/136 (1%)

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D A++A++A      ++VDV+++DTAGRLH ++ LM  +GK+ RV+++        VL V
Sbjct: 1   DPASVAFDAVATGVEQQVDVVLVDTAGRLHTSTDLMDQLGKVKRVVEKK--TEVDEVLLV 58

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           LDAT GQN L Q  +F  V   +G+++TK+DGTA+GG +  +     +PV  +G+GEG +
Sbjct: 59  LDATVGQNGLAQARIFREVVDISGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGAD 118

Query: 297 DLEPFVAKDFSAVITG 312
           DL PF  + F   + G
Sbjct: 119 DLAPFEVEGFVDALLG 134


>gi|297538884|ref|YP_003674653.1| flagellar biosynthetic protein FlhF [Methylotenera sp. 301]
 gi|297258231|gb|ADI30076.1| flagellar biosynthetic protein FlhF [Methylotenera sp. 301]
          Length = 495

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 105/257 (40%), Gaps = 21/257 (8%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           D ++ ++   L+ +    A+++++ E++       ++S ++ +  +  ++   L  +   
Sbjct: 204 DPIKSKMLSTLLSAGFSAALSRQLTEKMPE-----NLSEEKAMAWIKAILSINLNTIENE 258

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKI 160
              +   +  +  ++G  GVGKTT   KL+ +         + +   D +R    +QL+I
Sbjct: 259 --TEVLDQGGIFALIGPTGVGKTTTTAKLAARYVMKHGTENLGIITTDAYRIGGHEQLRI 316

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           +           +        A       + K    ++IDT G    + ++   I  +  
Sbjct: 317 YGKILGVMVHAVKDE------ADLKIALNELKNKHTVLIDTVGVSQRDRMVAEQIAMLSS 370

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
                  + P   L  L+AT+    L  V   +   G  G I+TK+D  A  G  + +V+
Sbjct: 371 T------NMPVKKLLCLNATSTGETLTDVIKAYKRKGLEGCIITKLDEAATIGNALDVVI 424

Query: 281 THKIPVYFLGVGEGIND 297
             K+ +Y++  G+ + +
Sbjct: 425 REKLKLYYVANGQRVPE 441


>gi|167534832|ref|XP_001749091.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772515|gb|EDQ86166.1| predicted protein [Monosiga brevicollis MX1]
          Length = 722

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 84/268 (31%), Gaps = 85/268 (31%)

Query: 52  LLIRSDIGVAVAQKIVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DF 107
            LI +D+       + + +        DV++      V   + + L  L  P        
Sbjct: 286 ALIEADVEPRHVMTLRDNIKKTIALEDDVNMVSNRKFVQRCVFQELCQLVDPDVTVWKPR 345

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
             R +VI+ VG+ G GKTT   KL                           K  A +   
Sbjct: 346 KKRANVIMFVGLQGAGKTTTCTKL---------------------------KQNATKARI 378

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
            F  S    D A +A +   Q + +K +++I+DT+GR    + L   +            
Sbjct: 379 PFYGSYTEVDPAVIAADGVDQFKREKFEIIIVDTSGRHKQEAALFEEM------------ 426

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
                         G  AL  +                                 + PV 
Sbjct: 427 ------------LQGGGALSAIAA------------------------------TRSPVI 444

Query: 288 FLGVGEGINDLEPFVAKDFSAVITGCLD 315
           F+G GE I DLEPF  + F + + G  D
Sbjct: 445 FIGTGERIEDLEPFAPRSFVSKLLGLGD 472


>gi|328948395|ref|YP_004365732.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Treponema succinifaciens DSM 2489]
 gi|328448719|gb|AEB14435.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Treponema succinifaciens DSM 2489]
          Length = 447

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 134/317 (42%), Gaps = 32/317 (10%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDG---VREELEDLLIRSDIGVAVAQKIVEE 69
            I +LTK F     +++E +  I+ +   +     + + +++LL  ++   +  +K+   
Sbjct: 128 QIGQLTKQFDQFKNEMQEQMKTIVQATSAEKEHSSILK-IQELLEENEFTKSYIKKMCSR 186

Query: 70  LLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTV 127
           +  +   +++     +   V++ I + +     P  ++     P VI++VG  GVGKTT 
Sbjct: 187 MKNEFSLEELDDFDYVQTCVADWIGENI-----PIAFEEKKSAPKVIIIVGPTGVGKTTT 241

Query: 128 IGKLS------KKMSDAGLK----VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           + K+S       K +    K    + +   DT R AAI+QLK WA+  + +   +E   D
Sbjct: 242 VAKMSSRISIDYKKNREKYKYPPRIRMITTDTMRVAAIEQLKRWAEIINVNVDKAESSED 301

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              L             D + IDT+G   N+   +A +  ++ V      +   +V   +
Sbjct: 302 LKILCDSYV-----SNSDYIFIDTSGYSPNDYENIAKMRTILNV-----KNLNENVYLAI 351

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-N 296
            A      L  +   +       +I+TK D T   G +I ++     PV ++  G+ + N
Sbjct: 352 TAGVSAKDLENIIRNYEGFDFKSIIVTKCDETTSFGRVISVLSEKNKPVSWITTGQDVLN 411

Query: 297 DLEPFVAKDFSAVITGC 313
            ++    K F   ++G 
Sbjct: 412 TIQRADPKWFLKNLSGF 428


>gi|120554894|ref|YP_959245.1| GTP-binding signal recognition particle [Marinobacter aquaeolei
           VT8]
 gi|120324743|gb|ABM19058.1| GTP-binding signal recognition particle SRP54, G- domain
           [Marinobacter aquaeolei VT8]
          Length = 437

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 22/255 (8%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-------KMLMPLSKPFNWDFSHRP 111
             AV Q++ E L       +++        +  +        KML    +    D+    
Sbjct: 171 NSAVQQRLAERLQEFGLGAELAGSLSRRHRAGRLEDGWKQSLKMLATGVRTGREDWLDAG 230

Query: 112 HVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            +  +VG  G GKTT IGKL+ +         + L   D +R AA +QL ++    +   
Sbjct: 231 GIYALVGPTGSGKTTTIGKLAARYVLEHGPDSLALVTTDRYRVAAHEQLFVFGRILNVPV 290

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
              +       +  E           +++IDTAG    +      + ++ R         
Sbjct: 291 RVVDESHSLDDILDE------LSDRHLVLIDTAGLTSADRGYQEQLAELAR------SDH 338

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 V+ AT+    ++ V   + +A   G IMTK+D     G  +  V+   +PV + 
Sbjct: 339 NIRTHLVVSATSQPRIMKSVWHCYKMASLAGCIMTKIDEALTLGEALGFVMETSLPVAWY 398

Query: 290 GVGEGIN-DLEPFVA 303
             G+ I  DL+   A
Sbjct: 399 TDGQKIPEDLQRAEA 413


>gi|213421009|ref|ZP_03354075.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 150

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 11/150 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V ++ +  +  K   
Sbjct: 2   FDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +   ++  N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDA-GLKVMLAAGDTFRSAAIDQLKI 160
            K + +    KV++ + D +R AAI QL+ 
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLET 150


>gi|313634393|gb|EFS00982.1| flagellar biosynthesis protein FlhF [Listeria seeligeri FSL N1-067]
 gi|313639082|gb|EFS04062.1| flagellar biosynthesis protein FlhF [Listeria seeligeri FSL S4-171]
          Length = 260

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 81/202 (40%), Gaps = 12/202 (5%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 61  IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV- 119

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              +  A L            VD ++IDT GR +     +  I     V+       P  
Sbjct: 120 --ATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTNVVH------PDL 171

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
                 +      +  +    A     G I+TKMD T R G L  ++    +PV ++  G
Sbjct: 172 TCFTFSSGMKSADVMSILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDG 231

Query: 293 EGINDLEPFVAKD--FSAVITG 312
           + I +   F  K    +    G
Sbjct: 232 QNITE-NIFRPKSRWLAERFVG 252


>gi|203284191|ref|YP_002221931.1| flagellar-associated GTP-binding protein [Borrelia duttonii Ly]
 gi|203287730|ref|YP_002222745.1| flagellar-associated GTP-binding protein [Borrelia recurrentis A1]
 gi|201083634|gb|ACH93225.1| flagellar-associated GTP-binding protein [Borrelia duttonii Ly]
 gi|201084950|gb|ACH94524.1| flagellar-associated GTP-binding protein [Borrelia recurrentis A1]
          Length = 393

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 61/325 (18%), Positives = 125/325 (38%), Gaps = 30/325 (9%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGV---REEL--------EDL 52
            +  + ++   +  K   S   +    I D+I   + L + +   +EE+        ED+
Sbjct: 63  DIGQQQINVEEEKRKILQSIKKEETSSIEDVIKEVKSLKNELAHKKEEINHPTILKIEDI 122

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L  +D   +  + I   +  +    D+     + D   +     +  S     +   R  
Sbjct: 123 LRSNDFSESYIRDINNFIKKEFSLSDLDDYDKVKDSVIIYIAKTIKCSGSLIDNLKKR-- 180

Query: 113 VILVVGVNGVGKTTVIGKLSKKM----SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           + ++VG  GVGKTT I KL+        D  L + +   D +R  A  Q++ + D     
Sbjct: 181 IFILVGPTGVGKTTTIAKLAAIYGINSDDKNLNIKIITIDNYRIGAKKQIQTYGDIMGIP 240

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E   D         +  Q+K  D+++IDT G+   + + +A + +++    R    
Sbjct: 241 VKAIESFKDLKE------EITQSKDFDLVLIDTIGKSPKDFMKLAEMKELLNACGR---- 290

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
                   + +TT  + ++++    +      +I TK+D T   G LI ++   +  V +
Sbjct: 291 -DAEFHLAVSSTTKTSDIKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIHEMRKEVSY 349

Query: 289 LGVGEGIND-LEPFVAKDFSAVITG 312
           +  G+ +   +       F   I G
Sbjct: 350 VTDGQIVPHNISIAEPLTFIKKING 374


>gi|58221317|gb|AAW68301.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 140

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 2/141 (1%)

Query: 68  EELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT
Sbjct: 1   KDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTT 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K     G  V+LAAGDTFR+AA +QL+ W    +   + S+   D+AA+ ++A 
Sbjct: 61  SIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGCNNVTVI-SQTTGDSAAVCFDAV 119

Query: 187 KQAQAKKVDVLIIDTAGRLHN 207
           + A+A+ +D+++ DTAGRL  
Sbjct: 120 QAAKARGIDIVLADTAGRLPT 140


>gi|119897396|ref|YP_932609.1| flagellar biosynthesis regulator FlhF [Azoarcus sp. BH72]
 gi|119669809|emb|CAL93722.1| putative flagellar biosynthesis protein FlhF [Azoarcus sp. BH72]
          Length = 510

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 96/249 (38%), Gaps = 23/249 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L+ +      A+K+ E        +D S Q     V   + + L    +  + D   R  
Sbjct: 243 LLEAGFSAPSARKLAE-----AVGEDDSPQAARAAVRAELDRALRA--RASDDDLIDRGG 295

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT   KL+ +        K+ L   D +R  A +QL+I+         
Sbjct: 296 VFALVGPTGVGKTTTTAKLAARCVVRHGASKLALITTDGYRIGAQEQLRIYGRILGVPVF 355

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                +D           A+ +   +++IDT G    + ++      +    +       
Sbjct: 356 SVRDAADLRQTL------AELRNKHMVLIDTMGVSQRDRMVAEQAAMLTGAGE------- 402

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L +L+AT   + L  V   +A     G+I +K+D  A     I + V  K+ + ++ 
Sbjct: 403 VRRLLLLNATCRGDTLDDVVRAYAGPDLAGVIFSKVDEAASLAPAIDVAVRRKLDLLYVT 462

Query: 291 VGEGIN-DL 298
            G+ +  DL
Sbjct: 463 NGQRVPEDL 471


>gi|193735096|gb|ACF20057.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 140

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 86/141 (60%), Gaps = 2/141 (1%)

Query: 68  EELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT
Sbjct: 1   KDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTT 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A 
Sbjct: 61  SIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDAV 119

Query: 187 KQAQAKKVDVLIIDTAGRLHN 207
           + A+A+ +D+++ DTAGRL  
Sbjct: 120 QAAKARGIDIVLADTAGRLPT 140


>gi|116582914|gb|ABK00078.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 140

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 86/141 (60%), Gaps = 2/141 (1%)

Query: 68  EELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT
Sbjct: 1   KDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTT 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A 
Sbjct: 61  SIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTTGDSAAVCFDAV 119

Query: 187 KQAQAKKVDVLIIDTAGRLHN 207
           + A+A+ +D+++ DTAGRL  
Sbjct: 120 QAAKARGIDIVLADTAGRLPT 140


>gi|34496479|ref|NP_900694.1| flagellar biosynthesis regulator FlhF [Chromobacterium violaceum
           ATCC 12472]
 gi|34102333|gb|AAQ58699.1| flagellar biosynthetic protein FlhF [Chromobacterium violaceum ATCC
           12472]
          Length = 479

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 106/265 (40%), Gaps = 22/265 (8%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           EL   L+   +G +   +++ +L+ K  A+  +   V +  S L H +    +     D 
Sbjct: 205 ELFKHLLA--MGFSA--QLIRQLIEKMPAQYQAEVAVKWARSALAHNLKCADADREVMDR 260

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
                +  +VG  GVGKTT + KL+ +  M      V L   D++R  A DQL+I+    
Sbjct: 261 GG---IFALVGPTGVGKTTTVAKLAARATMRFGAQHVALITTDSYRIGAQDQLRIYGKIL 317

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                  +   D           A      ++ IDT G    ++ ++A I  +       
Sbjct: 318 GVPVFSIQNEGDLQ------LTLADLSNRHIVFIDTVGMGQRDARVLAQIDMLRTA---- 367

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
               P   L +L A T  + L  V   +   G  G I++K+D     G  + +++ +++ 
Sbjct: 368 --GRPIERLLLLAANTDGHTLEDVVKRYRGDGLAGCILSKIDEAVAQGPSLDVIIRNRLK 425

Query: 286 VYFLGVGEGIN-DLEPFVAKDFSAV 309
           +Y++  G+ +  DL    A      
Sbjct: 426 LYYVTNGQRVPEDLHSANAAFLVDR 450


>gi|116582905|gb|ABK00075.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 140

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 86/141 (60%), Gaps = 2/141 (1%)

Query: 68  EELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT
Sbjct: 1   KDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTT 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K     G  V+LAAGDTFR+AA +QL+ W +R +   + S+   D+AA+ ++A 
Sbjct: 61  SIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVI-SQTAGDSAAVCFDAV 119

Query: 187 KQAQAKKVDVLIIDTAGRLHN 207
           + A+A+ +D+++ DTAGRL  
Sbjct: 120 QAAKARGIDIVLADTAGRLPT 140


>gi|217959254|ref|YP_002337802.1| flagellar biosynthesis regulator FlhF [Bacillus cereus AH187]
 gi|229138472|ref|ZP_04267061.1| hypothetical protein bcere0013_15890 [Bacillus cereus BDRD-ST26]
 gi|217066646|gb|ACJ80896.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           AH187]
 gi|228645009|gb|EEL01252.1| hypothetical protein bcere0013_15890 [Bacillus cereus BDRD-ST26]
          Length = 436

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +S  FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIKYILEDMSSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|311695195|gb|ADP98068.1| flagellar biosynthesis regulator FlhF [marine bacterium HP15]
          Length = 435

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 90/243 (37%), Gaps = 21/243 (8%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIH-------KMLMPLSKPFNWDFSHRPHVILV 116
           Q++ E L       D++        +  +        KML    +    ++        +
Sbjct: 170 QRLAERLQEFGLGSDLAGSISRRHKAGRLEDGWKQSLKMLCTGVRTSRMEWLDEGGAYAL 229

Query: 117 VGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           VG  G GKTT IGKL+ +         V L   D +R AA +QL ++    +      + 
Sbjct: 230 VGPTGSGKTTTIGKLAARYVLKHGSDSVALVTTDRYRVAAHEQLFVFGRILNVPVRVVDE 289

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
                 +  E           +++IDTAG    +      + ++ R       H      
Sbjct: 290 SHSLDDILDE------LSDRHLVLIDTAGLTSADKGYQEQLAELAR------SHHNIKTH 337

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            V+ AT+    ++ V   + +A   G +MTK+D     G  +  V+   +PV +   G+ 
Sbjct: 338 LVVSATSQPRIMKSVWHCYKMANLAGCLMTKIDEALTLGESLGFVMETGLPVAYYTDGQK 397

Query: 295 IND 297
           I +
Sbjct: 398 IPE 400


>gi|330882866|gb|EGH17015.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 386

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 16/176 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D+FR  A +QLK      +    
Sbjct: 224 VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 283

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-RVLKRLDPHA 229
             + G        +A +    K+  V++IDTAG   ++  L   +  +  R +K  +   
Sbjct: 284 HVDPGQSLV----QALEPLLRKR--VVLIDTAGLQASDPALRMQLESLAGRGIKSRN--- 334

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                 VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H++P
Sbjct: 335 ----YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELP 386


>gi|291288735|ref|YP_003505551.1| flagellar biosynthetic protein FlhF [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885895|gb|ADD69595.1| flagellar biosynthetic protein FlhF [Denitrovibrio acetiphilus DSM
           12809]
          Length = 395

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 113/252 (44%), Gaps = 18/252 (7%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +A K ++++  KR +  ++  ++   V++L+ + L+P+ K +    + +  V+ +VG  G
Sbjct: 150 IAYKFLKKI-EKRASHGLTPNQIRNLVTQLMSE-LIPVEKDYFSSINKK--VLALVGPTG 205

Query: 122 VGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKTT I K++  +S      V L   D FR  A++QL+ +A+        +   ++   
Sbjct: 206 VGKTTTIAKIAANLSLKMNKSVALITVDNFRIGAVEQLRTYAEIVDIPLRVASTPTELER 265

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           + YE       +  D + +D+ GR   +   +  + K + V           V  V+  +
Sbjct: 266 IIYE------CRDYDYVFVDSMGRSQFDDSQIGDLLKFMEVSP------LVKVALVMSMS 313

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLE 299
           +    +      ++      LI TK+D T   G L+ + +  K P+  L  G+ + +D+E
Sbjct: 314 SNHQEMADTYDRYSKLLPEYLIFTKLDETKYFGPLVNLPIKKKTPLMLLAGGQNVPDDME 373

Query: 300 PFVAKDFSAVIT 311
               K  +  I 
Sbjct: 374 VPDGKKIAGKIL 385


>gi|167633397|ref|ZP_02391722.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0442]
 gi|170686090|ref|ZP_02877312.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0465]
 gi|254683273|ref|ZP_05147134.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           CNEVA-9066]
 gi|254741035|ref|ZP_05198723.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           Kruger B]
 gi|167531435|gb|EDR94113.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0442]
 gi|170669787|gb|EDT20528.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0465]
          Length = 435

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 14/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K     V  +       E+I  +L  +S  FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLK---VKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIG 247

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 248 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 307

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 308 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 358

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 359 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 415


>gi|165869383|ref|ZP_02214042.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0488]
 gi|167638723|ref|ZP_02396998.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0193]
 gi|177650348|ref|ZP_02933315.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0174]
 gi|190566480|ref|ZP_03019398.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815456|ref|YP_002815465.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. CDC 684]
 gi|254734626|ref|ZP_05192338.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           Western North America USA6153]
 gi|254755278|ref|ZP_05207312.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           Vollum]
 gi|164714823|gb|EDR20341.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0488]
 gi|167513187|gb|EDR88558.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0193]
 gi|172083492|gb|EDT68552.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. A0174]
 gi|190562615|gb|EDV16582.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005419|gb|ACP15162.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. CDC 684]
          Length = 435

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 14/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K     V  +       E+I  +L  +S  FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLK---VKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIG 247

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 248 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 307

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 308 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 358

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 359 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 415


>gi|58221321|gb|AAW68303.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221323|gb|AAW68304.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221329|gb|AAW68307.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221331|gb|AAW68308.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221337|gb|AAW68311.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221341|gb|AAW68313.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|108937136|gb|ABG23380.1| putative signal recognition particle protein [Neisseria
           gonorrhoeae]
 gi|116582907|gb|ABK00076.1| regulatory protein [Neisseria gonorrhoeae]
 gi|116582909|gb|ABK00077.1| regulatory protein [Neisseria gonorrhoeae]
 gi|193735092|gb|ACF20055.1| regulatory protein [Neisseria gonorrhoeae]
 gi|193735100|gb|ACF20059.1| regulatory protein [Neisseria gonorrhoeae]
 gi|193735110|gb|ACF20064.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 140

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 2/141 (1%)

Query: 68  EELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT
Sbjct: 1   KDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTT 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A 
Sbjct: 61  SIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTTGDSAAVCFDAV 119

Query: 187 KQAQAKKVDVLIIDTAGRLHN 207
           + A+A+ +D+++ DTAGRL  
Sbjct: 120 QAAKARGIDIVLADTAGRLPT 140


>gi|255028364|ref|ZP_05300315.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes LO28]
          Length = 266

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 67  IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV- 125

Query: 173 EIGSDAAALAYEAFKQAQAKKV-DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              + + A   EA +        D ++IDT GR +    L       I      D   P 
Sbjct: 126 ---ATSPAELEEAVQYMTYVNCVDHILIDTVGRNY----LAEESVSEISAYT--DVVHPD 176

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
                  +      +  +    A     G I+TKMD T R G L  ++    +PV ++  
Sbjct: 177 LTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTD 236

Query: 292 GEGINDLEPFVAKD--FSAVITG 312
           G+ I +   F  K    +    G
Sbjct: 237 GQNITE-NIFRPKSRWLAERFVG 258


>gi|58221327|gb|AAW68306.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|193735106|gb|ACF20062.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 140

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 2/141 (1%)

Query: 68  EELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT
Sbjct: 1   KDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTT 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A 
Sbjct: 61  SIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTAGDSAAVCFDAV 119

Query: 187 KQAQAKKVDVLIIDTAGRLHN 207
           + A+A+ +D+++ DTAGRL  
Sbjct: 120 QAAKARGIDIVLADTAGRLPT 140


>gi|228945374|ref|ZP_04107729.1| hypothetical protein bthur0007_15370 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814346|gb|EEM60612.1| hypothetical protein bthur0007_15370 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 436

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +S  FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIEYILEDMSSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|134094537|ref|YP_001099612.1| flagellar biosynthesis regulator FlhF [Herminiimonas
           arsenicoxydans]
 gi|133738440|emb|CAL61485.1| putative flagellar biosynthesis regulator FlhF [Herminiimonas
           arsenicoxydans]
          Length = 423

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 103/264 (39%), Gaps = 23/264 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L ++L  +    ++A+ + E +         S Q  +  +  ++ + L  +      +  
Sbjct: 140 LREML-AAGFSASLARYLTERM-----PAGASKQSGMDWIKAILTRNLATIGNEN--EIL 191

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +  V  +VG  GVGKTT   KL+ +  M     K+ L   D +R    +QL+I+     
Sbjct: 192 EKGGVYALVGPTGVGKTTTTAKLAARCVMRHGPGKLALITTDGYRIGGYEQLRIYGKILG 251

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +        A       + K    ++IDT G    ++++   I  +        
Sbjct: 252 VMVHSVKDE------ADLRIALDELKGKHTVLIDTVGVSQRDNMVAEQIAML------SG 299

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             +    L  L+AT+    L +V   +   G  G I+TK+D  A  G  + +V+  K+ +
Sbjct: 300 AGSQVKRLLCLNATSTGETLNEVARSYMGDGLAGCILTKLDEAATIGSALDVVIRQKLNL 359

Query: 287 YFLGVGEGIN-DLEPFVAKDFSAV 309
           Y++  G+ +  DL     +     
Sbjct: 360 YYVANGQRVPEDLHVANQQYLVDR 383


>gi|58221325|gb|AAW68305.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221333|gb|AAW68309.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221339|gb|AAW68312.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221343|gb|AAW68314.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221345|gb|AAW68315.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221347|gb|AAW68316.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221349|gb|AAW68317.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221351|gb|AAW68318.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221353|gb|AAW68319.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|58221355|gb|AAW68320.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|193735104|gb|ACF20061.1| regulatory protein [Neisseria gonorrhoeae]
 gi|193735108|gb|ACF20063.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 140

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 2/141 (1%)

Query: 68  EELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT
Sbjct: 1   KDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTT 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A 
Sbjct: 61  SIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTTGDSAAVCFDAV 119

Query: 187 KQAQAKKVDVLIIDTAGRLHN 207
           + A+A+ +D+++ DTAGRL  
Sbjct: 120 QAAKARGIDIVLADTAGRLPT 140


>gi|329575671|gb|EGG57198.1| SRP54-type protein, helical bundle domain protein [Enterococcus
           faecalis TX1467]
          Length = 322

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 5/163 (3%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           KL+ +    G KV++AA DTFR+ AIDQL +W +R S + V  
Sbjct: 254 KLAHQYKLEGKKVLMAAADTFRAGAIDQLVVWGERASVEVVRG 296


>gi|254723856|ref|ZP_05185642.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           A1055]
 gi|301053309|ref|YP_003791520.1| flagellar biosynthesis protein [Bacillus anthracis CI]
 gi|300375478|gb|ADK04382.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 436

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +S  FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIEYILEDMSSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|218902885|ref|YP_002450719.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           AH820]
 gi|218535361|gb|ACK87759.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           AH820]
          Length = 436

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 98/254 (38%), Gaps = 14/254 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIEYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +        
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD---E 305

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+        +  +VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 306 AAITRALTYFKEEARVDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +   
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQH 419

Query: 298 LEPFVAKDFSAVIT 311
           +    A+  +  + 
Sbjct: 420 IHIATAEHLAKQML 433


>gi|58221335|gb|AAW68310.1| regulatory protein PilA [Neisseria gonorrhoeae]
 gi|193735094|gb|ACF20056.1| regulatory protein [Neisseria gonorrhoeae]
 gi|193735098|gb|ACF20058.1| regulatory protein [Neisseria gonorrhoeae]
 gi|193735102|gb|ACF20060.1| regulatory protein [Neisseria gonorrhoeae]
          Length = 140

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 2/141 (1%)

Query: 68  EELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT
Sbjct: 1   KDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTT 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A 
Sbjct: 61  SIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTAGDSAAVCFDAV 119

Query: 187 KQAQAKKVDVLIIDTAGRLHN 207
           + A+A+ +D+++ DTAGRL  
Sbjct: 120 QAAKARGIDIVLADTAGRLPT 140


>gi|330836611|ref|YP_004411252.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Spirochaeta coccoides DSM 17374]
 gi|329748514|gb|AEC01870.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Spirochaeta coccoides DSM 17374]
          Length = 396

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 110/276 (39%), Gaps = 16/276 (5%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
             + + +  LLI +D      QK+++ L        V         S L+++++  ++  
Sbjct: 114 QELTDHIRRLLILNDFSDTYIQKMLDYLGRDSDGGSVLEMDKPAAESALVNQIMATMAID 173

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-----SDAGLKVMLAAGDTFRSAAIDQ 157
                +H  H  +++G  GVGKTT I KL+         +    V +   D++R  A +Q
Sbjct: 174 -RVGQTHPAHNYVLLGPTGVGKTTTIAKLAAIFGVIPPPEERRSVAIITLDSYRVGAREQ 232

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           +  +AD  +     +   ++  ++          +  D+++IDT GR   ++ L   +  
Sbjct: 233 IFAFADALNLPAHQAHDENELFSVLD------SLEGTDLVLIDTIGRSPRDNELSIKLTS 286

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++ +               + A+  +  +       A     GLI+TK+D T   G  I 
Sbjct: 287 LLSIPTSESTAFY----LCIGASMKKADIEDAVRQTAPFSLRGLIITKLDETRTVGNFIS 342

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           +     +P+ F+  G+ I+D+ P         + G 
Sbjct: 343 LAAEKSLPLTFVTDGQKISDIHPMSHSLLLQRLQGF 378


>gi|228964755|ref|ZP_04125862.1| hypothetical protein bthur0004_15990 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228795005|gb|EEM42504.1| hypothetical protein bthur0004_15990 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 416

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 171 DVEQYFIYAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 228

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 229 PTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 288

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 289 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 339

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 340 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 396


>gi|225619296|ref|YP_002720522.1| flagellar biosynthesis regulator FlhF [Brachyspira hyodysenteriae
           WA1]
 gi|225214115|gb|ACN82849.1| flagellar biosynthesis regulator FlhF [Brachyspira hyodysenteriae
           WA1]
          Length = 679

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/278 (23%), Positives = 111/278 (39%), Gaps = 34/278 (12%)

Query: 38  SRRLDDGV-REELEDLLIRSDIGV------------------AVAQKIVEELLTKRYAKD 78
           S+ +D  V  +++ED    SD+ V                   +  ++ E LLT   A+ 
Sbjct: 397 SKDIDYDVSNDDVED---NSDVNVADGMEESFNYLRDREFPEEILLELREYLLTSSNARF 453

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
              + V+ +  E      + LS         +  +I+ VG  GVGKTT I K++ +   +
Sbjct: 454 FQSKDVIREEVEKYFAERLILSNGIEVGAKKK--IIVFVGPTGVGKTTTIPKIAAQYLKS 511

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G KV     D +R AA+DQL+ +A      F  +       A      +  +     +L 
Sbjct: 512 GKKVSFVTIDNYRIAAVDQLQRYASIMKVPFTSASTPEALRA------EIRKMDNSSLLF 565

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           IDT GR    +  +  + K    + R D      +  V+ AT       ++         
Sbjct: 566 IDTMGRSPKGAEDIVAMSKYFTTVGRFD----MDIQLVMSATAKYKDALKILNGFKPTNY 621

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
            G+I+TK+D T      I  +   K+P+ ++  G+G+ 
Sbjct: 622 KGVILTKVDETDYLASSICAITKKKLPITYITHGQGVP 659


>gi|196038895|ref|ZP_03106202.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           NVH0597-99]
 gi|196030040|gb|EDX68640.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           NVH0597-99]
          Length = 436

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 98/254 (38%), Gaps = 14/254 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIKYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +   
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQH 419

Query: 298 LEPFVAKDFSAVIT 311
           +    A+  +  + 
Sbjct: 420 IHIATAEHLAKQML 433


>gi|119953069|ref|YP_945278.1| flagellar biosynthesis regulator FlhF [Borrelia turicatae 91E135]
 gi|119861840|gb|AAX17608.1| flagellar biosynthesis protein FlhF [Borrelia turicatae 91E135]
          Length = 393

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/325 (18%), Positives = 125/325 (38%), Gaps = 30/325 (9%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGV---REEL--------EDL 52
            +  + ++   +  K   S   +    I D+I   + L + +   +EE+        ED+
Sbjct: 63  DIGQQQINVEEEKRKILQSIKKEESSSIEDVIKEVKSLKNELAHKKEEINHPTILKIEDI 122

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L  +D   +  + I + +  +    D+     + D   +     +  S     +   R  
Sbjct: 123 LRSNDFSESYIRDINDFIKREFSLSDLDDYDKVRDSVIIYIAKTIKCSGSIIDNLKKR-- 180

Query: 113 VILVVGVNGVGKTTVIGKLSKKM----SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           + ++VG  GVGKTT I KL+        D  L + +   D +R  A  Q++ + D     
Sbjct: 181 IFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP 240

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
               E   D         +  Q+K  D+++IDT G+   + + +A + +++    R    
Sbjct: 241 VKAIESFKDLKE------EITQSKDFDLVLIDTIGKSPKDFMKLAEMKELLNACGR---- 290

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
                   + +TT    ++++    +      +I TK+D T   G LI ++   +  V +
Sbjct: 291 -DAEFHLAVSSTTKTADIKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIHEMRKEVSY 349

Query: 289 LGVGEGIND-LEPFVAKDFSAVITG 312
           +  G+ +   +       F   I G
Sbjct: 350 VTDGQIVPHNISIAEPLTFIKKING 374


>gi|58221319|gb|AAW68302.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 140

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 82/141 (58%), Gaps = 2/141 (1%)

Query: 68  EELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT
Sbjct: 1   KDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTT 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGKL+K     G  V+LAAGDTFR+AA +QL+ W  R +   +    G  A A+ ++A 
Sbjct: 61  SIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQATGDSA-AVCFDAV 119

Query: 187 KQAQAKKVDVLIIDTAGRLHN 207
           + A+A+ +D+++ DTAGRL  
Sbjct: 120 QAAKARGIDIVLADTAGRLPT 140


>gi|49184610|ref|YP_027862.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           Sterne]
 gi|65319053|ref|ZP_00392012.1| COG1419: Flagellar GTP-binding protein [Bacillus anthracis str.
           A2012]
 gi|254759815|ref|ZP_05211839.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           Australia 94]
 gi|49178537|gb|AAT53913.1| flagellar biosynthetic protein FlhF, putative [Bacillus anthracis
           str. Sterne]
          Length = 281

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 14/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K     V  +       E+I  +L  +S  FN +  F      I ++G
Sbjct: 37  DVEQYFIHAYAEKLK---VKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIG 93

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 94  PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 153

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 154 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 204

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 205 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 261


>gi|332295034|ref|YP_004436957.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332178137|gb|AEE13826.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 352

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 12/194 (6%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
            +G  G GKTT I K++ +MS     +V L   DTFR AA+DQLK +AD     F  +  
Sbjct: 153 FLGPTGAGKTTTIAKIAARMSLLMKKRVCLITLDTFRIAALDQLKAYADIMDLPFFVAHS 212

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
             +   +      + +   +DV +IDT G             K   +   L       + 
Sbjct: 213 PKELKEVV-----KKEKSSIDVFLIDTMGFSPFQDN------KFKEISAFLSTGINTEIH 261

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
            VL A      L      +       +I TK+D     G +I + + + +P+   G G+ 
Sbjct: 262 LVLCANYKSQELGHYINKYKTLNPVSIIWTKLDEVISLGHIIELSIENNLPISLFGTGQS 321

Query: 295 INDLEPFVAKDFSA 308
           + D       +F +
Sbjct: 322 VPDNLEVATDEFLS 335


>gi|196045051|ref|ZP_03112284.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           03BB108]
 gi|196024053|gb|EDX62727.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           03BB108]
          Length = 436

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFETATMITEE--EVIEYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI+ + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIKTMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|52143686|ref|YP_083141.1| flagellar biosynthesis regulator FlhF [Bacillus cereus E33L]
 gi|51977155|gb|AAU18705.1| flagellar biosynthetic protein [Bacillus cereus E33L]
          Length = 436

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIKYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|255024776|ref|ZP_05296762.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           J1-208]
          Length = 200

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 11/185 (5%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 26  IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV- 84

Query: 173 EIGSDAAALAYEAFKQAQAKKV-DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              + + A   EA +        D ++IDT GR +    L       I      D   P 
Sbjct: 85  ---ATSPAELEEAVQYMTYVNCVDHILIDTVGRNY----LAEESVSEISAYT--DVVHPD 135

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
                  +      +  +    A     G I+TKMD T R G L  ++    +PV ++  
Sbjct: 136 LTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTD 195

Query: 292 GEGIN 296
           G+ I 
Sbjct: 196 GQNIT 200


>gi|228984856|ref|ZP_04145026.1| hypothetical protein bthur0001_15580 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774806|gb|EEM23202.1| hypothetical protein bthur0001_15580 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 436

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIEYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +        
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEVAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|324325789|gb|ADY21049.1| flagellar biosynthesis regulator FlhF [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 436

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 94/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  S   +  +  E+I  +L  +S  FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFESATMITEE--EVIEYILEDMSSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|229029451|ref|ZP_04185534.1| hypothetical protein bcere0028_15420 [Bacillus cereus AH1271]
 gi|228731910|gb|EEL82809.1| hypothetical protein bcere0028_15420 [Bacillus cereus AH1271]
          Length = 436

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 97/255 (38%), Gaps = 16/255 (6%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIGYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +        
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTMGFEVIAVRD---- 304

Query: 179 AALAYEAFKQAQAK-KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A    A    + +  VD ++IDTAG+ +  S  +     MI  + +++P     +   L
Sbjct: 305 EAAMTRALTYFKEEACVDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTL 358

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-N 296
            A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +  
Sbjct: 359 SASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQ 418

Query: 297 DLEPFVAKDFSAVIT 311
            +    A+  +  + 
Sbjct: 419 HIHIATAEHLAKQML 433


>gi|49477324|ref|YP_035890.1| flagellar biosynthesis regulator FlhF [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|228933055|ref|ZP_04095918.1| hypothetical protein bthur0009_15260 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229121323|ref|ZP_04250554.1| hypothetical protein bcere0016_16290 [Bacillus cereus 95/8201]
 gi|49328880|gb|AAT59526.1| flagellar biosynthetic protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|228662168|gb|EEL17777.1| hypothetical protein bcere0016_16290 [Bacillus cereus 95/8201]
 gi|228826656|gb|EEM72427.1| hypothetical protein bthur0009_15260 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 436

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 98/254 (38%), Gaps = 14/254 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIEYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +   
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQH 419

Query: 298 LEPFVAKDFSAVIT 311
           +    A+  +  + 
Sbjct: 420 IHIATAEHLAKQML 433


>gi|229160733|ref|ZP_04288725.1| hypothetical protein bcere0009_15230 [Bacillus cereus R309803]
 gi|228622748|gb|EEK79582.1| hypothetical protein bcere0009_15230 [Bacillus cereus R309803]
          Length = 435

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 99/254 (38%), Gaps = 14/254 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K      +  +  E+I  +L  +   FN +  F  +   I ++G
Sbjct: 190 DVEQYFIHAYAEKLKVKFEKATMITEE--EVIEYILEDMKSHFNTENVFEKKVQTIALIG 247

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +     ++ +     S  
Sbjct: 248 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDESAM 307

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 308 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 358

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +   
Sbjct: 359 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQH 418

Query: 298 LEPFVAKDFSAVIT 311
           +    A+  +  + 
Sbjct: 419 IHIATAEHLAKQML 432


>gi|189212014|ref|XP_001942334.1| signal recognition particle receptor subunit alpha [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187979533|gb|EDU46159.1| signal recognition particle receptor subunit alpha [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1338

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/274 (24%), Positives = 119/274 (43%), Gaps = 39/274 (14%)

Query: 19  KGFASTSL-KLKEGITDIISSRRLD-DGV---REELEDLLIRSDIGVAVAQKIVEELLTK 73
            G   +SL  +     +++  + L  + +    + +E+ L+R ++    A ++ E +   
Sbjct: 322 SGLVGSSLGAIGGLFRNVVGGKTLTKEDLAKPLKGMEEHLLRKNVAREAAVRLCESVERD 381

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSK-------PFNWDFSHRPHVILVVGVNGVGKTT 126
              K          + + + K+L P S              + RP+V+ +VGVNGVGK+T
Sbjct: 382 LTLK--------TSMEKALTKILTPTSSLDLLREIQHTNSTTTRPYVLSIVGVNGVGKST 433

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---------SADFVCSEIGSD 177
            + K++  +     +V++AA DTFRS A++QL++  DR            D      G D
Sbjct: 434 NLSKIAFFLLQNHHRVLIAAADTFRSGAVEQLRVHVDRLKELSQREGGHVDLFEKGYGKD 493

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM---------AGIGKMIRVLKRLDPH 228
           AA +A +A   A     ++++IDTAGR HN+  LM         A   K++ V + LD  
Sbjct: 494 AANIAADAVTFAAKNNFNIVLIDTAGRRHNDQRLMSSLEKFGKLANPDKILMVGEALDAA 553

Query: 229 APHS-VLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           +  S VL VL +    + +               
Sbjct: 554 SVFSYVLFVLVSRFALDGMTTTTGRFEGDKIWKT 587


>gi|90021811|ref|YP_527638.1| flagellar biosynthetic protein FlhF [Saccharophagus degradans 2-40]
 gi|89951411|gb|ABD81426.1| GTP-binding signal recognition particle SRP54, G-domain
           [Saccharophagus degradans 2-40]
          Length = 527

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 104/264 (39%), Gaps = 22/264 (8%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + +++ +V+ELL ++       +     +++L  ++          D      V   VG 
Sbjct: 271 LGLSENLVQELLLEQDGTTRPSEAWKGCLAKLSRRI-----PALKGDMVSGGGVFAFVGP 325

Query: 120 NGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            GVGKTT I KL+ +  + +   KV +   DT+R  A DQL+             +    
Sbjct: 326 TGVGKTTTIAKLAARFVLENGPGKVAIITTDTYRVGAHDQLRSLGRILGVPVRALDKDHS 385

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              L       A  K+  ++++DTAG    +++L   + ++       D       + V+
Sbjct: 386 LPVLL------ASLKQFPLILVDTAGFRQGDALLKEQLRQL-------DTCPTMRRILVM 432

Query: 238 DATTGQNALRQVEMFHA-VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
              +    L+     +A + G    ++TK+D +   G  + ++V   +PV +   G+ I 
Sbjct: 433 ACNSQLQTLKASVHAYAGMRGVDACVITKVDESLSMGEALSVLVEKSVPVAYTTDGQEIP 492

Query: 297 -DLEPFVAKDFSAVITGCLDYGEE 319
            D+ P       A         +E
Sbjct: 493 KDIAPASGHALIAKAVALAKQAQE 516


>gi|218896705|ref|YP_002445116.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           G9842]
 gi|218541539|gb|ACK93933.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           G9842]
          Length = 436

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIYAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 416


>gi|296125234|ref|YP_003632486.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Brachyspira murdochii DSM 12563]
 gi|296017050|gb|ADG70287.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Brachyspira murdochii DSM 12563]
          Length = 657

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 99/262 (37%), Gaps = 31/262 (11%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           +  R   + V  EL + L+ S                     +    +    + E + K 
Sbjct: 404 LRDREFPEEVLLELREYLLTS--------------------SNARFFQSKDVIREEVEKY 443

Query: 96  LMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
                   N  D   +  +I+ VG  GVGKTT I K++ +   +G KV     D +R AA
Sbjct: 444 FSDKLILANGIDVGAKKKIIVFVGPTGVGKTTTIPKIAAQHMKSGKKVSFVTIDNYRIAA 503

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           +DQL+ +A      F  +       A      +  +     +L IDT GR   ++  +  
Sbjct: 504 VDQLQRYASIMKVPFTSASTPEALRA------EIRKMDNSSLLFIDTMGRSPKSAEEIVA 557

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           + K    + R D      +  V+ AT       ++          G+I+TK+D T     
Sbjct: 558 MSKYFTTVGRFD----MDIQLVMSATAKYKDAVKILNGFKPTNYKGVILTKVDETDYLAS 613

Query: 275 LIPIVVTHKIPVYFLGVGEGIN 296
            I  +   K+P+ ++  G+G+ 
Sbjct: 614 SICAITRKKLPITYITHGQGVP 635


>gi|47565440|ref|ZP_00236481.1| flagellar biosynthetic protein flhF, putative [Bacillus cereus
           G9241]
 gi|47557430|gb|EAL15757.1| flagellar biosynthetic protein flhF, putative [Bacillus cereus
           G9241]
          Length = 433

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +S  FN +  F      I ++G
Sbjct: 188 DVEQYFIHAYAEKLKVKFENATMITEE--EVIEYILEDMSSHFNTENVFEKEVQTIALIG 245

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 246 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 305

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 306 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 356

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 357 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 413


>gi|42780863|ref|NP_978110.1| flagellar biosynthesis regulator FlhF [Bacillus cereus ATCC 10987]
 gi|42736783|gb|AAS40718.1| flagellar biosynthetic protein FlhF, putative [Bacillus cereus ATCC
           10987]
          Length = 436

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 100/254 (39%), Gaps = 14/254 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  ++  FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIEYILEDMTSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +  +
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKKN 419

Query: 298 LEPFVAKDFSAVIT 311
           +    A+  +  + 
Sbjct: 420 IHIATAEQLAKQML 433


>gi|229043527|ref|ZP_04191236.1| hypothetical protein bcere0027_15750 [Bacillus cereus AH676]
 gi|228725749|gb|EEL76997.1| hypothetical protein bcere0027_15750 [Bacillus cereus AH676]
          Length = 436

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 416


>gi|228926807|ref|ZP_04089875.1| hypothetical protein bthur0010_15230 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832920|gb|EEM78489.1| hypothetical protein bthur0010_15230 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 436

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 98/254 (38%), Gaps = 14/254 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIEYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +   
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSAAPIVLMTDGQDVKQH 419

Query: 298 LEPFVAKDFSAVIT 311
           +    A+  +  + 
Sbjct: 420 IHIATAEHLAKQML 433


>gi|228938884|ref|ZP_04101484.1| hypothetical protein bthur0008_15450 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971765|ref|ZP_04132386.1| hypothetical protein bthur0003_15420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978374|ref|ZP_04138751.1| hypothetical protein bthur0002_15780 [Bacillus thuringiensis Bt407]
 gi|228781391|gb|EEM29592.1| hypothetical protein bthur0002_15780 [Bacillus thuringiensis Bt407]
 gi|228787855|gb|EEM35813.1| hypothetical protein bthur0003_15420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820733|gb|EEM66758.1| hypothetical protein bthur0008_15450 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939384|gb|AEA15280.1| signal recognition particle protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 436

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIYAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 416


>gi|229090736|ref|ZP_04221969.1| hypothetical protein bcere0021_15600 [Bacillus cereus Rock3-42]
 gi|228692678|gb|EEL46404.1| hypothetical protein bcere0021_15600 [Bacillus cereus Rock3-42]
          Length = 370

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 125 DVEQYFIHAYAEKLKVKFENATMITEE--EVIKYILEDMRSHFNTENVFEKEVQTIALIG 182

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 183 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 242

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 243 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 293

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 294 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 350


>gi|229166626|ref|ZP_04294378.1| hypothetical protein bcere0007_15970 [Bacillus cereus AH621]
 gi|228616880|gb|EEK73953.1| hypothetical protein bcere0007_15970 [Bacillus cereus AH621]
          Length = 436

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 98/254 (38%), Gaps = 14/254 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIGYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +     A+ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGAEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A    VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAS---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +   
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQH 419

Query: 298 LEPFVAKDFSAVIT 311
           +    A+  +  + 
Sbjct: 420 IHIATAEHLAKQML 433


>gi|229172417|ref|ZP_04299976.1| hypothetical protein bcere0006_15280 [Bacillus cereus MM3]
 gi|228610888|gb|EEK68151.1| hypothetical protein bcere0006_15280 [Bacillus cereus MM3]
          Length = 436

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 99/254 (38%), Gaps = 14/254 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIGYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +  +   + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDYVKKIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +   
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQH 419

Query: 298 LEPFVAKDFSAVIT 311
           +    A+  +  + 
Sbjct: 420 IHIATAEHLAKQML 433


>gi|75762828|ref|ZP_00742648.1| Flagellar biosynthesis protein flhF [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228900354|ref|ZP_04064583.1| hypothetical protein bthur0014_15600 [Bacillus thuringiensis IBL
           4222]
 gi|74489682|gb|EAO53078.1| Flagellar biosynthesis protein flhF [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228859241|gb|EEN03672.1| hypothetical protein bthur0014_15600 [Bacillus thuringiensis IBL
           4222]
          Length = 436

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIYAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 416


>gi|224826339|ref|ZP_03699441.1| GTP-binding signal recognition particle SRP54 G- domain [Lutiella
           nitroferrum 2002]
 gi|224601440|gb|EEG07621.1| GTP-binding signal recognition particle SRP54 G- domain [Lutiella
           nitroferrum 2002]
          Length = 479

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 22/265 (8%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           EL   L+   +G++    ++ +L+ K  A+      + +  S L+H +    +     D 
Sbjct: 205 ELFKHLLS--VGLSAT--LIRQLIDKMPAQYQGEVTLKWARSALMHNLKCADADR---DV 257

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             R  +  +VG  GVGKTT + KL+ +  M      V L   D++R  A DQL+I+    
Sbjct: 258 MERGGIYALVGPTGVGKTTTVAKLAARATMKFGAQHVALITTDSYRIGAQDQLRIYGKIL 317

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                  +  S+           A      ++ IDT G    ++ + A            
Sbjct: 318 GVPVYSIQNESELQ------LTLADLASRHIVFIDTVGMGQRDARVAAQTQMF------D 365

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                   + ++ A    + L  V   +   G  G I++K+D +   G  + +++ +++ 
Sbjct: 366 GTGREIQRILLMAANADGHTLEDVVRHYRGHGLAGCILSKIDESVAMGPSLDVIIRNRLK 425

Query: 286 VYFLGVGEGIN-DLEPFVAKDFSAV 309
           ++++  G+ +  DL    A      
Sbjct: 426 MFYITNGQRVPEDLHLANAAFLIDR 450


>gi|229058420|ref|ZP_04196804.1| hypothetical protein bcere0026_15320 [Bacillus cereus AH603]
 gi|228719929|gb|EEL71519.1| hypothetical protein bcere0026_15320 [Bacillus cereus AH603]
          Length = 436

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 99/254 (38%), Gaps = 14/254 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIGYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +     ++ +        
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRD---E 305

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            A+A       +  +VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 306 PAMARALTYFKEEARVDYILIDTAGKNYRTSDTVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +   
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQH 419

Query: 298 LEPFVAKDFSAVIT 311
           +    A+  +  + 
Sbjct: 420 IHIATAEHLAKQML 433


>gi|329904714|ref|ZP_08273915.1| Flagellar biosynthesis protein FlhF [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547858|gb|EGF32616.1| Flagellar biosynthesis protein FlhF [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 443

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 114/293 (38%), Gaps = 23/293 (7%)

Query: 21  FASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             S    ++   +++  SS++  + V+  +   L+ +    ++++ ++E L         
Sbjct: 130 LRSMRTMMESQFSELSWSSQQKREPVKAVILRELLAAGFSASLSRYLIENLP--AGGTAA 187

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSD 137
           +    +  V       +   S            V  +VG  GVGKTT   KL+ +  M  
Sbjct: 188 AGMSWIKTVMARNINAITDESAMLEQGG-----VFALVGPTGVGKTTTTAKLAARCVMRH 242

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              K+ L   D +R    +QL+I+           +  SD   +A +  K         +
Sbjct: 243 GPGKLALIPTDGYRIGGYEQLRIYGKILGVMVHSVKDESDLR-IALDELKNKH-----TV 296

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDT G    + ++   +  +          +    L  L+AT+    L +V   +  +G
Sbjct: 297 LIDTVGVSQRDHMVTEQVAML------QGAGSRVKRLLCLNATSTGETLNEVVRAYQGSG 350

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAV 309
             G +MTK+D  A  G ++ +V+  K+ ++++  G+ +  DL     +     
Sbjct: 351 LAGCVMTKLDEAATIGSVLDVVIRQKLNLFYVANGQRVPEDLHVANKQYLVDR 403


>gi|325067024|ref|ZP_08125697.1| signal recognition particle protein [Actinomyces oris K20]
          Length = 158

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 10/158 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S ++      +    RL +        E+   L+ +D+ + V +     +  K   
Sbjct: 2   FGNLSDRITASFNQLRGKGRLTEADVNATVTEIRRALLEADVALPVVRAFTAAVREKAVD 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              S      Q+V+  V+E + ++L   ++  +W     P +I++ G+ G GKTT+ GKL
Sbjct: 62  AARSQALNPGQQVVKIVNEELIEVLGGQTREIHW-ADRGPTIIMLAGLQGAGKTTLAGKL 120

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            + + D G +V+L A D  R  A+ QL + A+R     
Sbjct: 121 GRWLRDQGKRVLLVASDLQRPNAVTQLSVVAERAGVHV 158


>gi|229069322|ref|ZP_04202612.1| hypothetical protein bcere0025_15270 [Bacillus cereus F65185]
 gi|228713809|gb|EEL65694.1| hypothetical protein bcere0025_15270 [Bacillus cereus F65185]
          Length = 439

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 194 DVEQYFIHAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 251

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 252 PTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 311

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 312 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 362

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 363 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 419


>gi|229096256|ref|ZP_04227229.1| hypothetical protein bcere0020_15040 [Bacillus cereus Rock3-29]
 gi|229115211|ref|ZP_04244621.1| hypothetical protein bcere0017_15060 [Bacillus cereus Rock1-3]
 gi|228668351|gb|EEL23783.1| hypothetical protein bcere0017_15060 [Bacillus cereus Rock1-3]
 gi|228687216|gb|EEL41121.1| hypothetical protein bcere0020_15040 [Bacillus cereus Rock3-29]
          Length = 436

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 99/254 (38%), Gaps = 14/254 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIGYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +     ++ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRTSDTVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +   
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQH 419

Query: 298 LEPFVAKDFSAVIT 311
           +    A+  +  + 
Sbjct: 420 IHIATAEHLAKQML 433


>gi|218234981|ref|YP_002366456.1| flagellar biosynthesis regulator FlhF [Bacillus cereus B4264]
 gi|218162938|gb|ACK62930.1| flagellar biosynthesis protein FlhF [Bacillus cereus B4264]
          Length = 436

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIYAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 416


>gi|229102370|ref|ZP_04233078.1| hypothetical protein bcere0019_15300 [Bacillus cereus Rock3-28]
 gi|228681017|gb|EEL35186.1| hypothetical protein bcere0019_15300 [Bacillus cereus Rock3-28]
          Length = 436

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 99/254 (38%), Gaps = 14/254 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIGYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +     ++ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQGYVKTIGSEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRTSDTVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +   
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQH 419

Query: 298 LEPFVAKDFSAVIT 311
           +    A+  +  + 
Sbjct: 420 IHIATAEHLAKQML 433


>gi|30261776|ref|NP_844153.1| flagellar biosynthesis regulator FlhF [Bacillus anthracis str.
           Ames]
 gi|30256004|gb|AAP25639.1| putative flagellar biosynthetic protein FlhF [Bacillus anthracis
           str. Ames]
          Length = 270

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 14/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K     V  +       E+I  +L  +S  FN +  F      I ++G
Sbjct: 26  DVEQYFIHAYAEKLK---VKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIG 82

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 83  PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 142

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 143 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 193

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 194 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 250


>gi|229189869|ref|ZP_04316879.1| hypothetical protein bcere0002_15430 [Bacillus cereus ATCC 10876]
 gi|228593543|gb|EEK51352.1| hypothetical protein bcere0002_15430 [Bacillus cereus ATCC 10876]
          Length = 439

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 194 DVEQYFIHAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 251

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 252 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 311

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 312 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 362

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 363 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 419


>gi|58221315|gb|AAW68300.1| regulatory protein PilA [Neisseria gonorrhoeae]
          Length = 140

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 2/141 (1%)

Query: 68  EELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++  +   K +     L   + E ++ ++ PL KP     +  P VI++ G+NG GKTT
Sbjct: 1   KDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTT 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            IGK +K     G  V+LAAGDTFR+AA +QL+ W  R +   + S+   D+AA+ ++A 
Sbjct: 61  SIGKFAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVI-SQTTGDSAAVCFDAV 119

Query: 187 KQAQAKKVDVLIIDTAGRLHN 207
           + A+A+ +D+++ DTAGRL  
Sbjct: 120 QAAKARGIDIVLADTAGRLPT 140


>gi|228958052|ref|ZP_04119787.1| hypothetical protein bthur0005_15630 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228801569|gb|EEM48451.1| hypothetical protein bthur0005_15630 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 436

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +        
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRD---E 305

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           AA+A       +  +VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 306 AAMARALTYFKEEARVDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 416


>gi|302878262|ref|YP_003846826.1| flagellar biosynthetic protein FlhF [Gallionella capsiferriformans
           ES-2]
 gi|302581051|gb|ADL55062.1| flagellar biosynthetic protein FlhF [Gallionella capsiferriformans
           ES-2]
          Length = 451

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 21/231 (9%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +LL K  A +   +  +    +++ + L       + D   R  V  ++G  GVGKTT  
Sbjct: 188 QLLDKMPAGNEKGESWIK---QVLKRNLR--VAGIDDDIVVRGGVYALIGPTGVGKTTTT 242

Query: 129 GKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            KL+ +        KV L   D++R  A +QLKI+           +   D         
Sbjct: 243 AKLAARAVVRYGADKVALLTTDSYRIGAYEQLKIYGKILGVAVHAVKGADDLR------L 296

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
             A  +   +++IDT G    +  ++                A    L VL++T+G + L
Sbjct: 297 TLAALRHKHLVLIDTVGMGQRDERVVEQGDMF--------DAAGVQRLLVLNSTSGGDTL 348

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             V   +      G I TK+D  A  G ++ +VV H++ +YF+  G+ + +
Sbjct: 349 EDVVRMYYSNKVIGCIATKLDEAANLGAILDVVVRHRLVMYFMANGQRVPE 399


>gi|229149976|ref|ZP_04278202.1| hypothetical protein bcere0011_15320 [Bacillus cereus m1550]
 gi|228633498|gb|EEK90101.1| hypothetical protein bcere0011_15320 [Bacillus cereus m1550]
          Length = 436

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKNKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 416


>gi|228952154|ref|ZP_04114246.1| hypothetical protein bthur0006_15630 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229078953|ref|ZP_04211505.1| hypothetical protein bcere0023_16150 [Bacillus cereus Rock4-2]
 gi|228704367|gb|EEL56801.1| hypothetical protein bcere0023_16150 [Bacillus cereus Rock4-2]
 gi|228807508|gb|EEM54035.1| hypothetical protein bthur0006_15630 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 439

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 194 DVEQYFIHAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 251

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 252 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 311

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 312 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 362

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 363 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 419


>gi|206970576|ref|ZP_03231528.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           AH1134]
 gi|206734212|gb|EDZ51382.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           AH1134]
          Length = 439

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 194 DVEQYFIHAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 251

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 252 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 311

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 312 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 362

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 363 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 419


>gi|229144384|ref|ZP_04272789.1| hypothetical protein bcere0012_15440 [Bacillus cereus BDRD-ST24]
 gi|228639015|gb|EEK95440.1| hypothetical protein bcere0012_15440 [Bacillus cereus BDRD-ST24]
          Length = 436

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDYSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI ++ +++P     +   L 
Sbjct: 309 TRALMYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIEMMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 416


>gi|196033363|ref|ZP_03100775.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus W]
 gi|195993797|gb|EDX57753.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus W]
          Length = 433

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 188 DVEQYFIHAYAEKLKVKFENATMITEE--EVIKYILEDMRSHFNTENVFEKEVQTIALIG 245

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 246 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 305

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 306 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 356

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 357 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 413


>gi|302851237|ref|XP_002957143.1| hypothetical protein VOLCADRAFT_98179 [Volvox carteri f.
           nagariensis]
 gi|300257550|gb|EFJ41797.1| hypothetical protein VOLCADRAFT_98179 [Volvox carteri f.
           nagariensis]
          Length = 510

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 72/188 (38%), Gaps = 16/188 (8%)

Query: 13  WIRKLTKGFASTSLKLKE---------GITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
               L+K        +           G +  +++  + +   +E+   L+ +D+ + V 
Sbjct: 71  MFDNLSKSLEKAQRLIGGCEVPGVGVVGKSGTLTAENMKEP-LKEVRRALLEADVSLPVV 129

Query: 64  QKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           ++ V+++  +     V        + +  VS  + +++       + +    P +IL+ G
Sbjct: 130 RRFVKKVEERALGTKVIEGVTPDVQFIKVVSNELIELMGGGVGAKDLEPGF-PQIILMAG 188

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + GVGKTT  GKL+  +  A    +L A D +R AAIDQL                    
Sbjct: 189 LQGVGKTTAAGKLALYLKKAKKSCLLVATDVYRPAAIDQLVKLGAAIDVPVFELGTQVSG 248

Query: 179 AALAYEAF 186
             + +   
Sbjct: 249 KPIKFVGV 256



 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 14/81 (17%)

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI------VVTHKIPVYFLGVGEG 294
             ++ L      +  A    L+        + G  I +            P+ F+GVGE 
Sbjct: 208 AKKSCLLVATDVYRPAAIDQLV--------KLGAAIDVPVFELGTQVSGKPIKFVGVGEK 259

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           +  LEPF  +  ++ I G  D
Sbjct: 260 MEALEPFYPERMASRILGMGD 280


>gi|228914349|ref|ZP_04077964.1| hypothetical protein bthur0012_15810 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228845343|gb|EEM90379.1| hypothetical protein bthur0012_15810 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 436

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 98/254 (38%), Gaps = 14/254 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIEYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +   
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQH 419

Query: 298 LEPFVAKDFSAVIT 311
           +    A+  +  + 
Sbjct: 420 IHIATAEHLAKQML 433


>gi|118477203|ref|YP_894354.1| flagellar biosynthesis regulator FlhF [Bacillus thuringiensis str.
           Al Hakam]
 gi|225863629|ref|YP_002749007.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           03BB102]
 gi|229183963|ref|ZP_04311178.1| hypothetical protein bcere0004_15300 [Bacillus cereus BGSC 6E1]
 gi|118416428|gb|ABK84847.1| flagellar biosynthetic protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|225788841|gb|ACO29058.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           03BB102]
 gi|228599488|gb|EEK57093.1| hypothetical protein bcere0004_15300 [Bacillus cereus BGSC 6E1]
          Length = 436

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIKYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|228920481|ref|ZP_04083826.1| hypothetical protein bthur0011_14950 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839111|gb|EEM84407.1| hypothetical protein bthur0011_14950 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 436

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 416


>gi|229109227|ref|ZP_04238826.1| hypothetical protein bcere0018_14980 [Bacillus cereus Rock1-15]
 gi|229127098|ref|ZP_04256095.1| hypothetical protein bcere0015_15520 [Bacillus cereus BDRD-Cer4]
 gi|296502372|ref|YP_003664072.1| cell division protein FtsY [Bacillus thuringiensis BMB171]
 gi|110002656|emb|CAJ55244.1| flagellum-associated protein [Bacillus cereus ATCC 14579]
 gi|228656214|gb|EEL12055.1| hypothetical protein bcere0015_15520 [Bacillus cereus BDRD-Cer4]
 gi|228674237|gb|EEL29482.1| hypothetical protein bcere0018_14980 [Bacillus cereus Rock1-15]
 gi|296323424|gb|ADH06352.1| cell division protein ftsY [Bacillus thuringiensis BMB171]
          Length = 439

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 194 DVEQYFIHAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 251

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 252 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 311

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 312 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 362

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 363 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 419


>gi|228907404|ref|ZP_04071262.1| hypothetical protein bthur0013_15710 [Bacillus thuringiensis IBL
           200]
 gi|228852265|gb|EEM97061.1| hypothetical protein bthur0013_15710 [Bacillus thuringiensis IBL
           200]
          Length = 436

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIYAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 416


>gi|55420633|gb|AAV52172.1| signal recognition particle receptor alpha subunit [Caenorhabditis
           remanei]
          Length = 183

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 24/189 (12%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                  RP+VI+  GVNGVGK+T + K++  +++   +V++AAGDTFR+ A++QL+   
Sbjct: 1   IEAKRDGRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIAAGDTFRAGAVEQLRTHT 60

Query: 163 DRTS------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
              +              G DAA LA  A K A  +  DV+++DTAGR+ +N  LM  + 
Sbjct: 61  RHLNALHPQSVHLYEQGYGKDAAGLAAAAIKIAAERDFDVVLVDTAGRMQDNEPLMRELA 120

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG-----------TTGLIMTK 265
           K+IRV      + P  VL V +A  G  A+ Q+  F+                 G+++TK
Sbjct: 121 KLIRV------NEPDLVLFVGEALVGNEAVDQLVKFNEALANHAAPGAKPRLIDGIVLTK 174

Query: 266 MDG-TARGG 273
            D    + G
Sbjct: 175 FDTIDDKVG 183


>gi|229155342|ref|ZP_04283452.1| hypothetical protein bcere0010_15350 [Bacillus cereus ATCC 4342]
 gi|228628057|gb|EEK84774.1| hypothetical protein bcere0010_15350 [Bacillus cereus ATCC 4342]
          Length = 433

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 188 DVEQYFIHAYAEKLKVKFENATMITEE--EVIEYILEDMRSHFNTENVFEKEVQTIALIG 245

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 246 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 305

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 306 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 356

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 357 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 413


>gi|291335672|gb|ADD95278.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C93]
          Length = 164

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 2/158 (1%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT-KRY 75
             KGF   +  ++     +    RLD+    ++E+    SD GV   ++I+E +    R 
Sbjct: 1   FKKGFHKGASIIQGAFDTLSGKSRLDESSLLDIEEAFYASDFGVETTEEILESIREAHRE 60

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKK 134
            K++  + V      ++ K L           S  +P V+ ++GVNG GKTT   KL  +
Sbjct: 61  NKELRAEGVGEIARSVLRKTLEGAEGVSMLGQSTEKPEVLCLIGVNGSGKTTTCAKLGYQ 120

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +  +G  ++L A DTFR+AA +QLK W++R   + V  
Sbjct: 121 LKSSGCSLILGACDTFRAAATEQLKEWSNRLDLEIVPI 158


>gi|229132599|ref|ZP_04261447.1| hypothetical protein bcere0014_15310 [Bacillus cereus BDRD-ST196]
 gi|228650831|gb|EEL06818.1| hypothetical protein bcere0014_15310 [Bacillus cereus BDRD-ST196]
          Length = 436

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 99/254 (38%), Gaps = 14/254 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIGYILKDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +     ++ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +   
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQH 419

Query: 298 LEPFVAKDFSAVIT 311
           +    A+  +  + 
Sbjct: 420 IHIATAEHLAKQML 433


>gi|289433959|ref|YP_003463831.1| flagellar biosynthesis protein FlhF, putative [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170203|emb|CBH26743.1| flagellar biosynthesis protein FlhF, putative [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 407

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 81/202 (40%), Gaps = 12/202 (5%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV- 266

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              +  A L            VD ++IDT GR +     +  I     V+       P  
Sbjct: 267 --ATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTNVVH------PDL 318

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
                 +      +  +    A     G I+TKMD T R G L  ++    +PV ++  G
Sbjct: 319 TCFTFSSGMKSADVMSILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDG 378

Query: 293 EGINDLEPFVAKD--FSAVITG 312
           + I +   F  K    +    G
Sbjct: 379 QNITE-NIFRPKSRWLAERFVG 399


>gi|71906380|ref|YP_283967.1| flagellar biosynthesis regulator FlhF [Dechloromonas aromatica RCB]
 gi|71846001|gb|AAZ45497.1| GTP-binding signal recognition particle SRP54, G-domain
           [Dechloromonas aromatica RCB]
          Length = 487

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 104/259 (40%), Gaps = 24/259 (9%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           + V+ E+   ++ +      ++ ++ +L  +  +  V     +   ++    ++   S+ 
Sbjct: 204 EPVKTEILRQMLDAGFSPQFSRDLLTDLPHEMNS--VEAMAWVKGAAD--RSLMTIGSE- 258

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKI 160
              D   R  V  +VG  GVGKTT   KL+ +  +     KV L   D +R  A +QL+I
Sbjct: 259 --HDIVDRGGVYALVGPTGVGKTTTTAKLAARCVLRHGPSKVALVTTDGYRIGAHEQLRI 316

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           +           +  ++      E       +   +++IDT G    + ++      +  
Sbjct: 317 YGRILGVSVHLVKDAAELRQTLIE------LQHKHMVLIDTMGMSQKDKLVPELTDML-- 368

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
                        L +L++T+  + L  V   +A     G I+TK+D  A     + +++
Sbjct: 369 ------AGCAVQRLLLLNSTSRGDTLDDVVRAYAGDTLAGCILTKIDEAASLATALDVIM 422

Query: 281 THKIPVYFLGVGEGIN-DL 298
            H + + ++  G+ +  DL
Sbjct: 423 RHNLKLLYVSNGQRVPEDL 441


>gi|325981883|ref|YP_004294285.1| flagellar biosynthetic protein FlhF [Nitrosomonas sp. AL212]
 gi|325531402|gb|ADZ26123.1| flagellar biosynthetic protein FlhF [Nitrosomonas sp. AL212]
          Length = 433

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 104/267 (38%), Gaps = 23/267 (8%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           +L   L+ S     +++++VE+L       ++  +  L      +   L  ++     + 
Sbjct: 145 KLLRTLLDSGFSPLLSRRLVEKL-----PPELDYELSLKQAMSALAFNLHTVAS---DEI 196

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             +  +  ++G  GVGKTT   KL+ +  +     +V L   D++R    +QL+I+    
Sbjct: 197 IEKGGIYALIGPTGVGKTTTTAKLAARCVIRHGADRVALLTTDSYRIGGHEQLRIYGRLL 256

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                  +   D           ++ +   +++IDT G    + +L   I  +       
Sbjct: 257 GIPVRTIKDTEDLQ------LTLSELRNKHMVLIDTVGMSQRDQMLAEQITMLSNC---- 306

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                   + +L A +    L +V   +   G  G I+TK+D  A  G  +  V+  K+ 
Sbjct: 307 --GTDIKRMLILSAASNGKTLDEVISAYHKNGIYGCIITKVDEAASLGVALDAVIRRKLV 364

Query: 286 VYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           ++++  G+ +  D+     +     I 
Sbjct: 365 LHYVANGQKVPEDIHAANPRYLLHRIF 391


>gi|116872070|ref|YP_848851.1| flagellar biosynthesis regulator FlhF [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|116740948|emb|CAK20068.1| flagellar biosynthesis protein FlhF, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 407

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 81/202 (40%), Gaps = 12/202 (5%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV- 266

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              +  A L            VD ++IDT GR +     +  I     V+       P  
Sbjct: 267 --ATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTNVVH------PDL 318

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
                 +      +  +    A     G I+TKMD T R G L  ++    +PV ++  G
Sbjct: 319 TCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDG 378

Query: 293 EGINDLEPFVAKD--FSAVITG 312
           + I +   F  K    +    G
Sbjct: 379 QNITE-NIFRPKSRWLAERFVG 399


>gi|229178179|ref|ZP_04305550.1| hypothetical protein bcere0005_15410 [Bacillus cereus 172560W]
 gi|228605309|gb|EEK62759.1| hypothetical protein bcere0005_15410 [Bacillus cereus 172560W]
          Length = 436

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKIKFENATMITEE--EVIRYILEDMKSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+       ++ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDNVKTIGSEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ I
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDI 416


>gi|206974777|ref|ZP_03235692.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           H3081.97]
 gi|222095394|ref|YP_002529454.1| flagellar biosynthesis regulator flhf [Bacillus cereus Q1]
 gi|206746796|gb|EDZ58188.1| putative flagellar biosynthetic protein FlhF [Bacillus cereus
           H3081.97]
 gi|221239452|gb|ACM12162.1| flagellar biosynthetic protein [Bacillus cereus Q1]
          Length = 436

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIEYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|229195984|ref|ZP_04322736.1| hypothetical protein bcere0001_15450 [Bacillus cereus m1293]
 gi|228587366|gb|EEK45432.1| hypothetical protein bcere0001_15450 [Bacillus cereus m1293]
          Length = 436

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 93/237 (39%), Gaps = 13/237 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIEYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +      + +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHGMKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALTYFKEEAR---VDYILIDTAGKNYRASETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416


>gi|78485090|ref|YP_391015.1| flagellar biosynthesis regulator FlhF [Thiomicrospira crunogena
           XCL-2]
 gi|78363376|gb|ABB41341.1| Flagellar biosynthesis component FlhF [Thiomicrospira crunogena
           XCL-2]
          Length = 388

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 107/264 (40%), Gaps = 26/264 (9%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L++  IG  +AQ++V ++       + +  +   +V   I  ML    +       
Sbjct: 119 LIKRLVKLGIGWDLAQRLVSDV-------NANNDQAWSEVLASIEAMLPVDDRDIIESGG 171

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV--MLAAGDTFRSAAIDQLKIWADRTS 166
               ++ +VG  GVGKTT I K++ +           L   D ++  A  QLK +AD   
Sbjct: 172 ----IVALVGPTGVGKTTTIAKMASRFVMRNSSSQIALVTTDCYKIGAQAQLKTFADLMG 227

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                     +  +L      +       +++IDTAG    + +L   + K    L    
Sbjct: 228 VPVHVVNSEGEMYSLLSSLATKK------LILIDTAGISQKDILLTQQLTKQKAGLN--- 278

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                    V+ A T  + ++ +       G  G I+TK+D   + G ++ +++ +++ +
Sbjct: 279 ---HIRNYLVMSAATQLSVMKDIVRSFDQVGLKGCILTKVDEALQLGNILTVLIENQLSL 335

Query: 287 YFLGVGEGIN-DLEPFVAKDFSAV 309
            +L  G+ +  DLEP  A+D    
Sbjct: 336 SYLSGGQRVPEDLEPVKARDLLDK 359


>gi|328467250|gb|EGF38330.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes 1816]
          Length = 352

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 153 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV- 211

Query: 173 EIGSDAAALAYEAFKQAQAKKV-DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              + + A   EA +        D ++IDT GR +    L       I      D   P 
Sbjct: 212 ---ATSPAELEEAVQYMTYVNCVDHILIDTVGRNY----LAEESVSEISAYT--DVVHPD 262

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
                  +      +  +    A     G I+TKMD T R G L  ++    +PV ++  
Sbjct: 263 LTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTD 322

Query: 292 GEGINDLEPFVAKD--FSAVITG 312
           G+ I +   F  K    +    G
Sbjct: 323 GQNITE-NIFRPKSRWLAERFVG 344


>gi|226944864|ref|YP_002799937.1| flagellar biosynthesis protein [Azotobacter vinelandii DJ]
 gi|226719791|gb|ACO78962.1| flagellar biosynthesis protein [Azotobacter vinelandii DJ]
          Length = 758

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 23/265 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L+ +  G  +  +I+  L  +  A   S   +   +   +   L  L        +
Sbjct: 130 LRQRLLGAGFGPCLGDEILAGLPAELAAGPASAPALQAWLERQLEARLPLLEDEAALLDA 189

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               VI +VG  GVGKTT   KL+ +        +V L + D+FR  A +QL+I+A    
Sbjct: 190 GG--VIALVGPTGVGKTTTAAKLAARYVMRHGASQVALISTDSFRIGAHEQLRIYARLLG 247

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            +          AA+A      A      ++IIDT G    +  L+  I ++        
Sbjct: 248 VEVH------TLAAVAPLEPLLAGLADKRLVIIDTVGMSQRDRRLLTQINQL------GA 295

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG------LIMTKMDGTARGGGLIPIVV 280
              P  ++ +L+A    + L +V   +  A           I++K D  AR G ++ I++
Sbjct: 296 AGRPVRLMLLLNAACHGDTLEEVVGTYQRAALAAGARLRDCIVSKCDEAARLGPVLDILM 355

Query: 281 THKIPVYFLGVGEGIN-DLEPFVAK 304
            H + + +L  G+ +  DL+   A+
Sbjct: 356 RHGLRLNYLTSGQQVPEDLQVAEAR 380


>gi|325971102|ref|YP_004247293.1| GTP-binding signal recognition particle SRP54 G- domain
           [Spirochaeta sp. Buddy]
 gi|324026340|gb|ADY13099.1| GTP-binding signal recognition particle SRP54 G- domain
           [Spirochaeta sp. Buddy]
          Length = 330

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 12/226 (5%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGD 148
           E+  ++L  L +   ++        + VG  GVGKTT + K +  +    G KV L + D
Sbjct: 104 EIEVQLLQSLFEGIQFEDEIGSKFAIFVGAAGVGKTTTLVKTALYLRAQKGKKVALLSFD 163

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           T R+ +++Q++ +A   +     +   S  A L       A  K  D +++DT+GR   +
Sbjct: 164 TQRTGSVEQIRQFAHEFALPLYEASDESALAGLL------ASLKGFDHILVDTSGRSAKD 217

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
             L A +  M+ VL    P    S   V+ A+  ++ L   +   A      +I TK+D 
Sbjct: 218 EELKAFLDGMLAVL----PFQGCSTYLVVSASHKESDLLAQQQLFAKQRVKAIICTKLDE 273

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVITGC 313
           T+  G L+  V    +P+ FL  G+ I  D  P  A      + G 
Sbjct: 274 TSGIGNLLSFVQKSDVPLLFLADGQTIPQDFHPASAAYLMTRLQGF 319


>gi|315281333|ref|ZP_07869980.1| flagellar biosynthesis protein FlhF [Listeria marthii FSL S4-120]
 gi|313615021|gb|EFR88518.1| flagellar biosynthesis protein FlhF [Listeria marthii FSL S4-120]
          Length = 407

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 81/202 (40%), Gaps = 12/202 (5%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLEVELIV- 266

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              +  A L            VD ++IDT GR +     +  I     V+       P  
Sbjct: 267 --ATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTDVVH------PDL 318

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
                 +      +  +    A     G I+TKMD T R G L  ++    +PV ++  G
Sbjct: 319 TCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDG 378

Query: 293 EGINDLEPFVAKD--FSAVITG 312
           + I +   F  K    +    G
Sbjct: 379 QNITE-NIFRPKSRWLAERFVG 399


>gi|163939581|ref|YP_001644465.1| flagellar biosynthesis regulator FlhF [Bacillus weihenstephanensis
           KBAB4]
 gi|163861778|gb|ABY42837.1| GTP-binding signal recognition particle SRP54 G- domain [Bacillus
           weihenstephanensis KBAB4]
          Length = 436

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 99/254 (38%), Gaps = 14/254 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIGYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +     ++ +     +  
Sbjct: 249 PTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRDEAAM 308

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
                   ++A+   VD ++IDTAG+ +  S  +     MI  + +++P     +   L 
Sbjct: 309 TRALSYFKEEAR---VDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTLS 359

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-ND 297
           A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +   
Sbjct: 360 ASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQH 419

Query: 298 LEPFVAKDFSAVIT 311
           +    A+  +  + 
Sbjct: 420 IHIATAEHLAKQML 433


>gi|164657404|ref|XP_001729828.1| hypothetical protein MGL_2814 [Malassezia globosa CBS 7966]
 gi|159103722|gb|EDP42614.1| hypothetical protein MGL_2814 [Malassezia globosa CBS 7966]
          Length = 540

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 121/304 (39%), Gaps = 58/304 (19%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + ++        L  G AS+ L    G    +  + LD  + + ++  L   ++   VA 
Sbjct: 233 ETSTSGPGLFAMLGSGRASSLLSRLTGAKSSLGKQDLDP-ILQAMQTHLQSKNVASDVAA 291

Query: 65  KIVEELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSK------------------ 101
            I E +  +   K +     +       +++ I ++L P +                   
Sbjct: 292 LICEGVEKRLIGKKIGNFGSVKAEVRASLNDSITRILTPSTSTDILLDIASKKQRRSELL 351

Query: 102 --------PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                     N   S  P+ I  VGVNGVGK+T + K+   +     +V++AA DTFRS 
Sbjct: 352 ATLPAHAVRGNVSPSLNPYSIGFVGVNGVGKSTNLAKVCFWLLQNRYRVLIAACDTFRSG 411

Query: 154 AIDQLKIWADRTS--------------------ADFVCSEIGSDAAALAYEAFKQAQAKK 193
           A++QL+                            +      G DAA +A +A   A+ + 
Sbjct: 412 AVEQLRTHVRNLGELEVDGHRVADGAPGTGAAMLELYERGYGKDAAGIAKDALAYARNEG 471

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            DV++IDTAGR+ +N  LM  + K+I V      + P  VL V +A  G  A+ Q+  F+
Sbjct: 472 FDVVLIDTAGRMQDNEPLMRALAKLIAV------NQPDKVLFVGEALVGNEAVDQLTKFN 525

Query: 254 AVAG 257
               
Sbjct: 526 RALK 529


>gi|62719471|gb|AAX93336.1| signal recognition particle protein Ffh [Lactobacillus
           sanfranciscensis]
          Length = 257

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 6/129 (4%)

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           K A+    D + +           LM  +  + +V    D      +L V+DA TGQNA+
Sbjct: 3   KGAKENYNDSVFLILLFDYQLIEKLMNELKAIKQVALPTD------ILLVVDAMTGQNAV 56

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
              E F+     TG+++TK+DG  RGG  + I      P+ F G GE +++L+ F     
Sbjct: 57  NMAEGFNEALDITGVVLTKLDGDTRGGAALSIKAVTGKPILFTGQGEKMDNLDVFHPDRM 116

Query: 307 SAVITGCLD 315
           ++ I G  D
Sbjct: 117 ASRILGMGD 125


>gi|229011064|ref|ZP_04168258.1| hypothetical protein bmyco0001_15160 [Bacillus mycoides DSM 2048]
 gi|228750236|gb|EEM00068.1| hypothetical protein bmyco0001_15160 [Bacillus mycoides DSM 2048]
          Length = 436

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 99/255 (38%), Gaps = 16/255 (6%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V Q  +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEQYFIHAYAEKLKVKFENATMITEE--EVIGYILEDMRSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +     ++ +        
Sbjct: 249 PTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRD---- 304

Query: 179 AALAYEAFKQAQAK-KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A    A    + + +VD ++IDTAG+ +  S  +     MI  + +++P     +   L
Sbjct: 305 EAAMTRALSYFKEEARVDYILIDTAGKNYRTSETVEE---MIETMGQVEP---DYICLTL 358

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-N 296
            A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +  
Sbjct: 359 SASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQ 418

Query: 297 DLEPFVAKDFSAVIT 311
            +    A+  +  + 
Sbjct: 419 HIHIATAEHLAKQML 433


>gi|257095370|ref|YP_003169011.1| flagellar biosynthesis regulator FlhF [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047894|gb|ACV37082.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 458

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 106/259 (40%), Gaps = 24/259 (9%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           + V+ E+   ++ +      A++++ +L       D+   + L  V     + L+ ++  
Sbjct: 173 EPVKTEMLRQMLDAGFSPRFARELLADL-----PHDLDAGQALGWVKGGADRSLLTINSE 227

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKI 160
              D   R  V  +VG  GVGKTT   KL+ +  +     K+ L   D +R  A +QL+I
Sbjct: 228 --TDIVDRGGVYALVGPTGVGKTTTTAKLAARCVLRHGARKLALVTTDGYRIGAHEQLRI 285

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           +          +    D      +       +   +++IDT G    + ++   +     
Sbjct: 286 YGRILGVSVHLARDAEDLRTTLTD------LQHKHMVLIDTMGMSQRDRLVSEQVAMF-- 337

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
                   +    L +L AT+G + L  V   ++     G I+TK+D  A     + +++
Sbjct: 338 ------GDSKVKSLLLLSATSGGDTLDDVVRAYSGLHLAGCILTKVDEAAGLAASLDVII 391

Query: 281 THKIPVYFLGVGEGIN-DL 298
             ++ ++++  G+ +  DL
Sbjct: 392 RQRLRLFYVSNGQRVPEDL 410


>gi|16799764|ref|NP_470032.1| flagellar biosynthesis regulator FlhF [Listeria innocua Clip11262]
 gi|16413141|emb|CAC95921.1| lin0689 [Listeria innocua Clip11262]
          Length = 407

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 12/202 (5%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV- 266

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              +  A L            VD ++IDT GR +     ++ I     V+       P  
Sbjct: 267 --ATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVSEIAAYTNVVH------PDL 318

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
                 +      +  +    A     G I+TKMD T R G L  ++    +PV ++  G
Sbjct: 319 TCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDG 378

Query: 293 EGINDLEPFVAKD--FSAVITG 312
           + I +   F  K    +    G
Sbjct: 379 QNITE-NIFRPKSRWLAERFVG 399


>gi|315301914|ref|ZP_07872925.1| flagellar biosynthesis protein FlhF [Listeria ivanovii FSL F6-596]
 gi|313629710|gb|EFR97832.1| flagellar biosynthesis protein FlhF [Listeria ivanovii FSL F6-596]
          Length = 407

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 81/202 (40%), Gaps = 12/202 (5%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV- 266

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              +  A L            VD ++IDT GR +     +  I     V+       P  
Sbjct: 267 --ATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVNEIAAYTNVVH------PDL 318

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
                 +      +  +    A     G I+TKMD T R G L  ++    +PV ++  G
Sbjct: 319 TCFTFSSGMKSADVMSILPKLAEIPMDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDG 378

Query: 293 EGINDLEPFVAKD--FSAVITG 312
           + I +   F  K    +    G
Sbjct: 379 QNITE-NIFRPKSRWLAERFVG 399


>gi|313624923|gb|EFR94831.1| flagellar biosynthesis protein FlhF [Listeria innocua FSL J1-023]
          Length = 407

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 12/202 (5%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV- 266

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              +  A L            VD ++IDT GR +     ++ I     V+       P  
Sbjct: 267 --ATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVSEIAAYTNVVH------PDL 318

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
                 +      +  +    A     G I+TKMD T R G L  ++    +PV ++  G
Sbjct: 319 TCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDG 378

Query: 293 EGINDLEPFVAKD--FSAVITG 312
           + I +   F  K    +    G
Sbjct: 379 QNITE-NIFRPKSRWLAERFVG 399


>gi|56964014|ref|YP_175745.1| flagellar biosynthesis protein FlhF [Bacillus clausii KSM-K16]
 gi|56910257|dbj|BAD64784.1| flagellar biosynthesis protein FlhF [Bacillus clausii KSM-K16]
          Length = 325

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 14/197 (7%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKI 160
                   R   ++V G  GVGKTT I KL+ K M +    V     DT+R AA++QLK 
Sbjct: 124 QLQPFVQKRQQTLIVAGPTGVGKTTTIAKLAAKAMFEENKTVSFITFDTYRIAAVEQLKT 183

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           +A         +   S+   L          +  D++++DTAGR + +  +   + + IR
Sbjct: 184 YAHILDCPIYTAYNESELIDLCGR-------QTADLVLVDTAGRNYLHEQMPVELVEYIR 236

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
                   +   V+ +  A   ++A   +  F       GLI+TK+D TA  G L  ++ 
Sbjct: 237 -----QSASCDLVVALSLAAKAEDARHMLSRFPKEL-VNGLILTKLDETASLGTLCELLY 290

Query: 281 THKIPVYFLGVGEGIND 297
           +  IPV  +  G+ + +
Sbjct: 291 SEAIPVACVTTGQNVPE 307


>gi|217965221|ref|YP_002350899.1| flagellar biosynthetic protein FlhF [Listeria monocytogenes HCC23]
 gi|217334491|gb|ACK40285.1| flagellar biosynthetic protein FlhF [Listeria monocytogenes HCC23]
 gi|307570220|emb|CAR83399.1| flagellar biosynthesis protein (flagella-associated GTP-binding
           protein), putative [Listeria monocytogenes L99]
          Length = 407

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV- 266

Query: 173 EIGSDAAALAYEAFKQAQAKKV-DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              + + A   EA +        D ++IDT GR +    L       I      D   P 
Sbjct: 267 ---ATSPAELEEAVQYMTYVNCVDHILIDTVGRNY----LAEESVSEISAYT--DVVHPD 317

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
                  +      +  +    A     G I+TKMD T R G L  ++    +PV ++  
Sbjct: 318 LTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTD 377

Query: 292 GEGINDLEPFVAKD--FSAVITG 312
           G+ I +   F  K    +    G
Sbjct: 378 GQNITE-NIFRPKSRWLAERFVG 399


>gi|46906932|ref|YP_013321.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47091644|ref|ZP_00229440.1| flagellar biosynthesis protein FlhF, putative [Listeria
           monocytogenes str. 4b H7858]
 gi|254824039|ref|ZP_05229040.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           J1-194]
 gi|254853115|ref|ZP_05242463.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           R2-503]
 gi|254932039|ref|ZP_05265398.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           HPB2262]
 gi|254992438|ref|ZP_05274628.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           J2-064]
 gi|255521622|ref|ZP_05388859.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           J1-175]
 gi|300764492|ref|ZP_07074485.1| flagellar biosynthesis protein FlhF [Listeria monocytogenes FSL
           N1-017]
 gi|46880198|gb|AAT03498.1| putative flagellar biosynthesis protein FlhF [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47019963|gb|EAL10700.1| flagellar biosynthesis protein FlhF, putative [Listeria
           monocytogenes str. 4b H7858]
 gi|258606465|gb|EEW19073.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           R2-503]
 gi|293583592|gb|EFF95624.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           HPB2262]
 gi|293593268|gb|EFG01029.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           J1-194]
 gi|300514846|gb|EFK41900.1| flagellar biosynthesis protein FlhF [Listeria monocytogenes FSL
           N1-017]
 gi|332311106|gb|EGJ24201.1| Flagellar biosynthesis regulator FlhF [Listeria monocytogenes str.
           Scott A]
          Length = 407

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV- 266

Query: 173 EIGSDAAALAYEAFKQAQAKKV-DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              + + A   EA +        D ++IDT GR +    L       I      D   P 
Sbjct: 267 ---ATSPAELEEAVQYMTYVNCVDHILIDTVGRNY----LAEESVSEISAYT--DVVHPD 317

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
                  +      +  +    A     G I+TKMD T R G L  ++    +PV ++  
Sbjct: 318 LTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTD 377

Query: 292 GEGINDLEPFVAKD--FSAVITG 312
           G+ I +   F  K    +    G
Sbjct: 378 GQNITE-NIFRPKSRWLAERFVG 399


>gi|253996638|ref|YP_003048702.1| flagellar biosynthesis regulator FlhF [Methylotenera mobilis JLW8]
 gi|253983317|gb|ACT48175.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methylotenera mobilis JLW8]
          Length = 427

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 116/299 (38%), Gaps = 25/299 (8%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDII-SSRRLDDGVREELEDLLIRSDIGV 60
           ++  + S+ + W+  L +   S    ++  +  I  S+ +  + ++ E+   L+ +    
Sbjct: 101 ASNTMPSKQMLWV--LKE-MRSMRNVIESQLATIAWSNIQQREPIKAEVLGTLLGASFSP 157

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           A+++ + E+L       ++   +    V  ++ K L  +             V  ++G  
Sbjct: 158 ALSRYLAEKL-----PANLDSDKAQAWVKYILSKNLNTVENEAEILDQGG--VFALIGPT 210

Query: 121 GVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GVGKTT   KL+ +         + L   D +R    +QL+I+           +     
Sbjct: 211 GVGKTTTTAKLAARYVMKHGTQNLGLITTDAYRVGGHEQLRIYGKILGVIVHAVKDE--- 267

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
              A  A    + K    ++IDT G    + ++   I  +         + P   L  L 
Sbjct: 268 ---ADLALALNELKHKHTILIDTVGVSQRDRMVTEQIALL------SAGNTPIKKLLCLS 318

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           AT     L  V   +   G  G I+TK+D  A  G  + +++  K+ +Y+   G+ + +
Sbjct: 319 ATNTGETLTDVISAYKGKGLDGCIITKLDEAATIGNTLDVIIREKLKLYYTATGQRVPE 377


>gi|229017057|ref|ZP_04173976.1| hypothetical protein bcere0030_16210 [Bacillus cereus AH1273]
 gi|229023238|ref|ZP_04179748.1| hypothetical protein bcere0029_15790 [Bacillus cereus AH1272]
 gi|228738032|gb|EEL88518.1| hypothetical protein bcere0029_15790 [Bacillus cereus AH1272]
 gi|228744230|gb|EEL94313.1| hypothetical protein bcere0030_16210 [Bacillus cereus AH1273]
          Length = 436

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 98/255 (38%), Gaps = 16/255 (6%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVG 118
            V    +     K   K  +   +  +  E+I  +L  +   FN +  F      I ++G
Sbjct: 191 DVEHYFIHAYAEKLKMKFENATMITEE--EVIGYILEDMKSHFNTENVFEKEVQTIALIG 248

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT + K++ +       V     D  R   + QL+ +     ++ +        
Sbjct: 249 PTGVGKTTTLAKMAWQFHAKRKTVGFITTDHSRIGTVQQLQDYVKTIGSEVIAVRD---- 304

Query: 179 AALAYEAFKQAQAK-KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A    A    + + +VD ++IDTAG+ +  S  +     MI  + +++P     +   L
Sbjct: 305 EAAMTRALTYFKEESRVDYILIDTAGKNYRTSETIEE---MIETMGQVEP---DYICLTL 358

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-N 296
            A+     + ++          G++ TK D TA  G L+ I      P+  +  G+ +  
Sbjct: 359 SASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKQ 418

Query: 297 DLEPFVAKDFSAVIT 311
            +    A+  +  + 
Sbjct: 419 HIHIATAEHLAKQML 433


>gi|269836604|ref|YP_003318832.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Sphaerobacter thermophilus DSM 20745]
 gi|269785867|gb|ACZ38010.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Sphaerobacter thermophilus DSM 20745]
          Length = 358

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 13/186 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           V  +VG +GVGKTT I KL+   S   G +V L   DT+R   I QLK +A+     F  
Sbjct: 156 VAALVGPSGVGKTTTIAKLAAIFSATRGRRVALVTTDTYRVGGIAQLKTFAEILQLPFYT 215

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                D       A ++      D++++DT G    ++ ++  +  +I        + P 
Sbjct: 216 VYTREDLD----HALEETAE--ADLVLVDTPGCNPYDAAMLREMRNLI------GSNTPV 263

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
           +    L  T   + L       A+    GLI TK+D T R   +I +V   ++P+ +   
Sbjct: 264 TCYLTLAMTGDFDELIAASQRFALLNPAGLIATKLDETRRAPAVIGLVEQTRLPLTYTCA 323

Query: 292 GEGIND 297
           G  + D
Sbjct: 324 GPLVPD 329


>gi|16802723|ref|NP_464208.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           EGD-e]
 gi|224502014|ref|ZP_03670321.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           R2-561]
 gi|254829338|ref|ZP_05234025.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           N3-165]
 gi|254830328|ref|ZP_05234983.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           10403S]
 gi|284801011|ref|YP_003412876.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           08-5578]
 gi|284994153|ref|YP_003415921.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           08-5923]
 gi|16410070|emb|CAC98759.1| lmo0681 [Listeria monocytogenes EGD-e]
 gi|258601750|gb|EEW15075.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           N3-165]
 gi|284056573|gb|ADB67514.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           08-5578]
 gi|284059620|gb|ADB70559.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           08-5923]
          Length = 407

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV- 266

Query: 173 EIGSDAAALAYEAFKQAQAKKV-DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              + + A   EA +        D ++IDT GR +    L       I      D   P 
Sbjct: 267 ---ATSPAELEEAVQYMTYVNCVDHILIDTVGRNY----LAEESVSEISAYT--DVVHPD 317

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
                  +      +  +    A     G I+TKMD T R G L  ++    +PV ++  
Sbjct: 318 LTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTD 377

Query: 292 GEGINDLEPFVAKD--FSAVITG 312
           G+ I +   F  K    +    G
Sbjct: 378 GQNITE-NIFRPKSRWLAERFVG 399


>gi|47095246|ref|ZP_00232857.1| flagellar biosynthesis protein FlhF, putative [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224498763|ref|ZP_03667112.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           Finland 1988]
 gi|254900083|ref|ZP_05260007.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           J0161]
 gi|254911364|ref|ZP_05261376.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           J2818]
 gi|254935691|ref|ZP_05267388.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           F6900]
 gi|47016317|gb|EAL07239.1| flagellar biosynthesis protein FlhF, putative [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258608273|gb|EEW20881.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           F6900]
 gi|293589300|gb|EFF97634.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes
           J2818]
          Length = 407

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 14/203 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV- 266

Query: 173 EIGSDAAALAYEAFKQAQAKKV-DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              + + A   EA +        D ++IDT GR +    L       I      D   P 
Sbjct: 267 ---ATSPAELEEAVQYMTYVNCVDHILIDTVGRNY----LAEESVSEISAYT--DVVHPD 317

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
                  +      +  +    A     G I+TKMD T R G L  ++    +PV ++  
Sbjct: 318 LTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTD 377

Query: 292 GEGINDLEPFVAKD--FSAVITG 312
           G+ I +   F  K    +    G
Sbjct: 378 GQNITE-NIFRPKSRWLAERFVG 399


>gi|253997222|ref|YP_003049286.1| flagellar biosynthesis regulator FlhF [Methylotenera mobilis JLW8]
 gi|253983901|gb|ACT48759.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Methylotenera mobilis JLW8]
          Length = 459

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 108/251 (43%), Gaps = 21/251 (8%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           + ++L+ S    A+A      +L+++   +++  + L  V  ++ K L  L  P      
Sbjct: 176 ILNILLSSGFSAALA-----RMLSEKMPANLNEAKALAWVKAILSKNLDNL--PSEMGML 228

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +  +  ++G  GVGKTT   KL+ +         + L   D +R    +QL+I+     
Sbjct: 229 DQGGIFALIGPTGVGKTTTTAKLAARYVMKHGTESLGLITTDAYRIGGHEQLRIYGKILG 288

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 +  +D   +A    K  +      ++IDT G    ++++   I  +       +
Sbjct: 289 VMVHAVKDEADL-KIALNELKNKR-----TILIDTVGVSQRDTMVTEQIAML------SN 336

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            +A    L  L+AT+    L  V   +   G  G I+TK+D     GG++ +++  K+ +
Sbjct: 337 TNAGIKKLLCLNATSTGETLTDVIRAYKGKGLDGTIITKLDEAVTIGGVLDVIIRGKLKL 396

Query: 287 YFLGVGEGIND 297
           Y+L  G+ + +
Sbjct: 397 YYLANGQRVPE 407


>gi|299541618|ref|ZP_07051967.1| signal recognition particle-docking protein FtsY [Lysinibacillus
           fusiformis ZC1]
 gi|298725853|gb|EFI66468.1| signal recognition particle-docking protein FtsY [Lysinibacillus
           fusiformis ZC1]
          Length = 124

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 1/121 (0%)

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHV 113
            +D+GV   QK++ +L      K +    +L+D +   +  +L  + +P        P V
Sbjct: 1   MADVGVDTTQKLIRQLEQHADRKALKDSALLFDKLQHDMAALLQDVEQPLTPVNPAGPFV 60

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL+VGVNGVGKTT IGK++++    G  VMLAAGDTFR+AA++QL++W +R     +   
Sbjct: 61  ILMVGVNGVGKTTTIGKMAQQFKQQGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQH 120

Query: 174 I 174
            
Sbjct: 121 T 121


>gi|323338216|gb|EGA79449.1| Srp101p [Saccharomyces cerevisiae Vin13]
          Length = 359

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 117/270 (43%), Gaps = 51/270 (18%)

Query: 33  TDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD- 87
             ++ ++ +++     V E+L   LI  ++    A  + +++         +    + + 
Sbjct: 83  KHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENT 142

Query: 88  ----VSELIHKMLMP-----LSKPFNWDFSHR-------PHVILVVGVNGVGKTTVIGKL 131
               +++ + ++L P     L +      S +       P+V  +VGVNGVGK+T + KL
Sbjct: 143 ARESLTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKL 202

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG---------------- 175
           +  +     KV++ A DTFRS A++QL++  +  +     S +                 
Sbjct: 203 AFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVEL 262

Query: 176 --------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                        +A +A K ++ +  D++++DTAGR HN+  LM+ +          D 
Sbjct: 263 FEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSF------ADQ 316

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
             P  ++ V +A  G ++++Q + F+   G
Sbjct: 317 AKPDKIIMVGEALVGTDSVQQAKNFNDAFG 346


>gi|117926319|ref|YP_866936.1| GTP-binding signal recognition particle [Magnetococcus sp. MC-1]
 gi|117610075|gb|ABK45530.1| GTP-binding signal recognition particle SRP54, G- domain
           [Magnetococcus sp. MC-1]
          Length = 452

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 20/224 (8%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK-KMSDAGLKVMLAAGDTFRSAAIDQLKI 160
            F         VI++VG  GVGKTT + K++   + +    V +   DTFR  A+ QL+ 
Sbjct: 241 KFRDPLEGTARVIVLVGPTGVGKTTTLAKIAADLLLNRRRSVGMITLDTFRVGAVAQLET 300

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           +A       V +   S+  A  +         + D +++DT G    N   +   G ++ 
Sbjct: 301 YAKLLQVRLVVARSLSEVKAGMHA------LNRCDYILVDTVGSSPYNRRQVNSTGSLLP 354

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV 280
           V+           L  + A   +   + V    +    TGLI TK+D T   G L+ + +
Sbjct: 355 VM-----GEDRETLLCMAANVRETEQQAVFRRFSTLNPTGLIFTKLDETVTFGNLLNVGL 409

Query: 281 THKIPVYFLGVGEGIND-LEPFVAK----DFSAVITGCLDYGEE 319
             ++P+     G+ + + L  F A+     F        + G+E
Sbjct: 410 RARLPLTMYADGQRVPENLGWFSAEVLAKWFEQR---DGEPGDE 450


>gi|45657255|ref|YP_001341.1| flagellar biosynthesis regulator FlhF [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600493|gb|AAS69978.1| flagellar GTP-binding protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 428

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 95/236 (40%), Gaps = 12/236 (5%)

Query: 63  AQKIVEELLTKRYAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            ++I+ ++  +    D      VL    E++ + +   S  F     ++  VI  VG  G
Sbjct: 169 VEEIISKVEERLSPLDQGRNHAVLERTIEILKERVSVDSDLFRGTGKNQRKVIFFVGPTG 228

Query: 122 VGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
            GKTT + KL +K     G  V L   D +R AAI+QLK +AD     F   +       
Sbjct: 229 SGKTTSVAKLAAKYFLHRGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFK- 287

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
                 +       ++++IDTAG  H N   +  +  ++      D       L VL +T
Sbjct: 288 ------ETLARDGSELILIDTAGYSHRNLEQLERMNSLLSCFGEKDS---VENLLVLSST 338

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +  +    V   +       +++TK+D     GG + +  T+     +  VG+ + 
Sbjct: 339 SSYHHTSTVLKAYESLNYRRILLTKLDEADFLGGFLELADTYSKSFTYYSVGQEVP 394


>gi|294828140|ref|NP_712787.2| flagellar biosynthesis regulator FlhF [Leptospira interrogans
           serovar Lai str. 56601]
 gi|293385987|gb|AAN49805.2| flagellar biosynthesis regulator FlhF [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 426

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 95/236 (40%), Gaps = 12/236 (5%)

Query: 63  AQKIVEELLTKRYAKDVSVQR-VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            ++I+ ++  +    D      VL    E++ + +   S  F     ++  VI  VG  G
Sbjct: 167 VEEIISKVEERLSPLDQGRNHAVLERTIEILKERVSVDSDLFRGTGKNQRKVIFFVGPTG 226

Query: 122 VGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
            GKTT + KL +K     G  V L   D +R AAI+QLK +AD     F   +       
Sbjct: 227 SGKTTSVAKLAAKYFLHRGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFK- 285

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
                 +       ++++IDTAG  H N   +  +  ++      D       L VL +T
Sbjct: 286 ------ETLARDGSELILIDTAGYSHRNLEQLERMNSLLSCFGEKDS---VENLLVLSST 336

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +  +    V   +       +++TK+D     GG + +  T+     +  VG+ + 
Sbjct: 337 SSYHHTSTVLKAYESLNYRRILLTKLDEADFLGGFLELADTYSKSFTYYSVGQEVP 392


>gi|226223312|ref|YP_002757419.1| flagellar biosynthesis protein FlhF [Listeria monocytogenes
           Clip81459]
 gi|225875774|emb|CAS04477.1| Putative flagellar biosynthesis protein FlhF [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 407

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 14/203 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+  A+ +  
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDAELIV- 266

Query: 173 EIGSDAAALAYEAFKQAQAKKV-DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
              + + A   EA +        D ++IDT GR +    L       I      D   P 
Sbjct: 267 ---ATSPAELEEAVQYMTYVNCVDHILIDTVGRNY----LAEESVSEISAYT--DVVHPD 317

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
                  +      +  +    A     G I+TKMD T R G L  ++    +PV ++  
Sbjct: 318 LTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTD 377

Query: 292 GEGINDLEPFVAKD--FSAVITG 312
           G+ I +   F  K    +    G
Sbjct: 378 GQNITE-NIFRPKSRWLAERFVG 399


>gi|147678406|ref|YP_001212621.1| flagellar biosynthesis regulator FlhF [Pelotomaculum
           thermopropionicum SI]
 gi|146274503|dbj|BAF60252.1| flagellar GTP-binding protein [Pelotomaculum thermopropionicum SI]
          Length = 415

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 121/302 (40%), Gaps = 29/302 (9%)

Query: 27  KLKEGITDIISSRRLDDGVREE--L--EDLLIRSDIGVAVAQKIVEELLTKR----YAKD 78
                + + +  +++  G++E+  L    +L+     + V + IVE LL+          
Sbjct: 129 NGSGNLFENMVKKQIAAGLKEDPVLKWRKMLLD----MEVQENIVEHLLSVAGSGGNLSG 184

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
              +R  +++ + +  +L    +P          ++  VG  G+GKTT + KL+ + S  
Sbjct: 185 DGSRRFFFNLQKRVIDLLETAYRPGENAR-----ILTFVGPAGMGKTTTLTKLAARFSLY 239

Query: 139 GLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
             K +     +T+R     + +      +   +  E+      LA            D +
Sbjct: 240 DRKKIAVIAVNTYRIGG--EAERLLAYGNLLGIPVEVVMTPLELAKVLESHTDK---DYI 294

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDT GR   ++  +  +   + V+K      PH +  VL +      L ++       G
Sbjct: 295 LIDTNGRSARSTGQLLELKGFLDVVK-----EPHDIFLVLSSAAKNRDLSRIAWEFQKVG 349

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDFSAVITGCLDY 316
            T LI TK+D T   G ++ +V     PV +L  G+ I +D+     K  + ++   +D 
Sbjct: 350 YTKLIFTKVDETETHGSILNLVCALGAPVAYLADGQEIPDDISEAGPKKIARLLFRGVDP 409

Query: 317 GE 318
            E
Sbjct: 410 DE 411


>gi|330950744|gb|EGH51004.1| signal recognition particle protein [Pseudomonas syringae Cit 7]
          Length = 243

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 45/84 (53%)

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
             L V+DA TGQ+A    + F      TG+I+TK+DG ARGG  + +      P+ F+G+
Sbjct: 1   ETLFVVDAMTGQDAANTAKAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGM 60

Query: 292 GEGINDLEPFVAKDFSAVITGCLD 315
           GE    LEPF     ++ I G  D
Sbjct: 61  GEKSEALEPFHPDRIASRILGMGD 84


>gi|325302918|tpg|DAA34489.1| TPA_inf: signal recognition particle subunit Srp54 [Amblyomma
           variegatum]
          Length = 160

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 10/152 (6%)

Query: 21  FASTSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT---- 72
            A    K+   +  +    I ++ + D + +E+   L+ +DI + + +++ E + +    
Sbjct: 10  LADLGRKITNALRSLSNATIINKEVLDSMLKEICTALLEADINIKLVKQLRENVRSVIDI 69

Query: 73  KRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
              A  ++ +R++   V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 70  DEMAAGLNKRRMIQSAVFKELIKLVDPGVKAWQ-PTKGKNNVIMFVGLQGSGKTTTCTKL 128

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           +      G K  L   DTFR+ A DQLK  A 
Sbjct: 129 AYHYLKKGWKTCLVCADTFRAGAFDQLKQNAT 160


>gi|313620090|gb|EFR91597.1| flagellar biosynthesis protein FlhF [Listeria innocua FSL S4-378]
          Length = 385

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 9/185 (4%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + +  
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV- 266

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              +  A L            VD ++IDT GR +     ++ I     V+       P  
Sbjct: 267 --ATSPAELEEAVQYMTYVSGVDHILIDTVGRNYLAEESVSEIAAYTNVVH------PDL 318

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
                 +      +  +    A     G I+TKMD T R G L  ++    +PV ++  G
Sbjct: 319 TCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDG 378

Query: 293 EGIND 297
           + I +
Sbjct: 379 QNITE 383


>gi|294339805|emb|CAZ88168.1| putative Flagellar GTP-binding protein [Thiomonas sp. 3As]
          Length = 490

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 23/195 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +  +VG  G GKTT I KL+ ++        V L   DT+R   ++QLKI+         
Sbjct: 275 IYALVGPTGAGKTTTIAKLAARLVLRHGTAAVALITTDTYRIGGVEQLKIYGRILGVPV- 333

Query: 171 CSEIGSDAAALAYEA--FKQAQAKKVD--VLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                    A+A +    +Q      D   ++ID+ G    ++ +   +  +  +     
Sbjct: 334 ---------AVARDGEELQQHLRDFADRRYVLIDSIGLSPRDARMAEQMQWLQAL----- 379

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                + L V+ A    +A  ++   +        I+TK+D +   G  +  +V   +P+
Sbjct: 380 -GEGVTRLLVVGAGLAPSAYAELWSLYRRLPVAAAILTKLDESPSFGAALQWLVEGSVPL 438

Query: 287 YFLGVGEGIN-DLEP 300
           +F   G+ +  DL  
Sbjct: 439 WFYTDGQRVPEDLHV 453


>gi|296135636|ref|YP_003642878.1| flagellar biosynthetic protein FlhF [Thiomonas intermedia K12]
 gi|295795758|gb|ADG30548.1| flagellar biosynthetic protein FlhF [Thiomonas intermedia K12]
          Length = 512

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 23/195 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +  +VG  G GKTT I KL+ ++        V L   DT+R   ++QLKI+         
Sbjct: 296 IYALVGPTGAGKTTTIAKLAARLVLRHGTAAVALITTDTYRIGGVEQLKIYGRILGVPV- 354

Query: 171 CSEIGSDAAALAYEA--FKQAQAKKVD--VLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                    A+A +    +Q      D   ++ID+ G    ++ +   +  +  +     
Sbjct: 355 ---------AVARDGEELQQHLRDFADRRYVLIDSIGLSPRDARMAEQMQWLQAL----- 400

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                + L V+ A    +A  ++   +        I+TK+D +   G  +  +V   +P+
Sbjct: 401 -GDSVTRLLVVGAGLAPSAYAELWSLYRRLPVAAAILTKLDESPSFGAALQWLVEGSVPL 459

Query: 287 YFLGVGEGIN-DLEP 300
           +F   G+ +  DL  
Sbjct: 460 WFYTDGQRVPEDLHV 474


>gi|299822257|ref|ZP_07054143.1| flagellar biosynthesis regulator FlhF [Listeria grayi DSM 20601]
 gi|299815786|gb|EFI83024.1| flagellar biosynthesis regulator FlhF [Listeria grayi DSM 20601]
          Length = 408

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/292 (19%), Positives = 119/292 (40%), Gaps = 45/292 (15%)

Query: 35  IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA--------KDVSVQ---- 82
           ++  +++     E L   L  ++      +++ E+L  +R A        K + +     
Sbjct: 108 LLEEKKITQADFESLRAELAAAN------KQLSEKLYQERIASSGFVRFLKKIGIDSSYH 161

Query: 83  -RVLYDVSELIHKM---------------LMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            R +  V + +  +               +     P+      +  +I ++G  GVGKTT
Sbjct: 162 PRFIKQVQKELGAVESLHEDDYLPWLRLAIGKSIPPYRPVILKQQRIISLIGQTGVGKTT 221

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            + KL  ++ + G  V     DTFRS A++Q + +AD+  A+ + ++   +      EA 
Sbjct: 222 TLVKLGWQLLEQGETVGFITTDTFRSGAVEQFQGYADKLEAELIVAKSPEELK----EAI 277

Query: 187 KQAQA-KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                   VD ++IDT GR + ++  +A +    ++++      P     V +A +    
Sbjct: 278 DYLTFVSGVDHILIDTVGRNYFDAETIAELDAYYQIIQ------PDLTCFVFNANSSTAD 331

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           ++ +          G I+TK+D TA  G           P+ ++  G+ I++
Sbjct: 332 IQLILGKLENIPIDGFIVTKLDETALLGNYYRFTQELTQPILWVTDGQTISE 383


>gi|269468029|gb|EEZ79750.1| signal recognition particle GTPase [uncultured SUP05 cluster
           bacterium]
          Length = 196

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/142 (40%), Positives = 86/142 (60%), Gaps = 3/142 (2%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRPH 112
           I +DIG+    K++E +      K +     LY  + + + K+L+      N +  +   
Sbjct: 57  ITADIGINTTDKVLESVRKNASRKILKNSDSLYQFLKDELRKLLID-DNQLNINV-NSTF 114

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VILVVGVNG GKTT IGKL+K   + G  VMLAAGDTFR+AA++QLK+W +R     V  
Sbjct: 115 VILVVGVNGAGKTTTIGKLAKSFQNQGKSVMLAAGDTFRAAAVEQLKVWGERNEIPVVAQ 174

Query: 173 EIGSDAAALAYEAFKQAQAKKV 194
             G+DAA++ Y+A++ A+AK +
Sbjct: 175 ATGADAASVIYDAYESAKAKNI 196


>gi|183220347|ref|YP_001838343.1| flagellar biosynthesis regulator FlhF [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910464|ref|YP_001962019.1| flagellar biosynthesis regulator FlhF [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775140|gb|ABZ93441.1| Endoflagellar biosynthesis protein, GTP-binding [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778769|gb|ABZ97067.1| Flagellar biosynthesis protein FlhF (Flagella associated
           GTP-binding protein) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 451

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 112/295 (37%), Gaps = 31/295 (10%)

Query: 6   VASESLSWIRKLTKGFASTSLK---LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           +A    S++  + +   S   K   +++ I  ++      +   EE+   L +    V +
Sbjct: 151 LAEAKESFLESIPERTISPKEKHPHIQKLIDRLLREG-FSESYLEEMAVTLEQRLSAVDL 209

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +     +  K                  + + +   S  F+     +  V+  VG  G 
Sbjct: 210 TRY--ANVTDKAVT--------------YLEERIQVDSDLFSGTPRGKRKVVFFVGPTGS 253

Query: 123 GKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           GKTT I KL+ K S   G KV L   D +R AAIDQLK +AD     F  ++        
Sbjct: 254 GKTTSIAKLAAKYSLHMGKKVSLYTTDNYRIAAIDQLKFYADAMGLPFYAAKDLRKWKET 313

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
                        +++++DTAG  H  S  +  + +   V    D       + VL +T 
Sbjct: 314 ILR-------DGSELILVDTAGYSHRKSENLEKLQEFYEVFGEKD---HIETILVLSSTV 363

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
            ++    V   +   G   +++TK+D     G ++ +  T      FL VG+ + 
Sbjct: 364 AKDNALAVTNAYESVGYKRILLTKLDEAEFLGSVVELADTIHREFAFLSVGQDVP 418


>gi|207108639|ref|ZP_03242801.1| signal recognition particle receptor [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 186

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 7/183 (3%)

Query: 26  LKLKEGITDIISSRRLDDGV-REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
            K+   I    +  +  + + +EELE++LI  DI   + + +++ L      K + V  +
Sbjct: 6   KKIVNKIKGEEAKEKKRENIPKEELEEILIGFDIQYDLIESLLQHLGDLVTPKQLEVALL 65

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
            +   E  +       K      + +P V L+VGVNG GKTT I KL+K       K +L
Sbjct: 66  RFVRGESYYD------KTRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKTLL 119

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            AGDTFR+AA+ QL++W ++ +   + ++ GSD ++LAY   + A AK +D + IDTAGR
Sbjct: 120 GAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSLAYNTIESAIAKNIDEVFIDTAGR 179

Query: 205 LHN 207
              
Sbjct: 180 ATQ 182


>gi|1213500|gb|AAC44500.1| signal recognition particle protein [Streptococcus mutans]
          Length = 142

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 71/142 (50%), Gaps = 11/142 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F S + +L+    ++   R+L +     V +E+   L+ +D+ + VA++ ++ +  +  
Sbjct: 2   AFESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVAKEFIKRVRKRAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E +  +L   +       S  P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKS-SKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKM-SDAGLKVMLAAGDTFR 151
           L+ K+  +   + ++ A D +R
Sbjct: 121 LANKLVKEENARPLMIAADIYR 142


>gi|119476302|ref|ZP_01616653.1| flagellar biosynthesis protein [marine gamma proteobacterium
           HTCC2143]
 gi|119450166|gb|EAW31401.1| flagellar biosynthesis protein [marine gamma proteobacterium
           HTCC2143]
          Length = 515

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 88/237 (37%), Gaps = 18/237 (7%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           DV   +      ++   ++  L+        D      V   VG  G GKTT IGKL+ +
Sbjct: 256 DVDPTKSSRGSIDIWQTVMTDLTARLPIVGSDMVGSGGVFAFVGPTGAGKTTTIGKLATR 315

Query: 135 MSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                    V L   DT R AA +QL+ +           +  +    + +        +
Sbjct: 316 YVLENGAENVALVTTDTMRIAAHEQLRTFGRILKVPVCIVDKNNSLDRVLH------SLR 369

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
              +++IDTAG    +  L + +  +  +  R+        + V+  T+  + +R     
Sbjct: 370 HKSLVLIDTAGLNRQDPKLQSQLSSLNELGDRVQS------ILVIPTTSQPDVVRSAYHT 423

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
           +        ++TK+D T   GG + +++   + V +   G+ I  D+    A     
Sbjct: 424 YKTDNMNLCVLTKLDETMSLGGALTVIIDKSLSVAYSTDGQAIPGDIAIAKADQLVR 480


>gi|255636768|gb|ACU18718.1| unknown [Glycine max]
          Length = 175

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 10/174 (5%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREE----LEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   +  + ++  +D+ V  +    +   L++SD+   + + +   +      
Sbjct: 3   LAELGGSISRALQQMSNATIIDEKVLNDCLNDITRALLQSDVQFKLVRDMQTNIKNIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           +D++       + +      + K+L P  KP       +  V++ VG+ G GKTT   K 
Sbjct: 63  EDLAAGHNKRRIIQQAVFNELCKILDP-GKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           +      G K  L   DTFR+ A DQLK  A +    F  S + SD   L ++ 
Sbjct: 122 AFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKLLWKG 175


>gi|241763668|ref|ZP_04761718.1| GTP-binding signal recognition particle SRP54 G- domain [Acidovorax
           delafieldii 2AN]
 gi|241367143|gb|EER61509.1| GTP-binding signal recognition particle SRP54 G- domain [Acidovorax
           delafieldii 2AN]
          Length = 495

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 96/259 (37%), Gaps = 24/259 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           LIR+    A+A+ ++E +       ++S    +  + E++ + L                
Sbjct: 221 LIRAGYSPALARAVLERMPE-----ELSAAESVRWLMEVLERNLKTDMHAPPLYEEGG-- 273

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +  +VG  GVGKTT   KL+   +       V L   DT+R  A +QL+ +         
Sbjct: 274 IFALVGSTGVGKTTTTAKLAAHCARIHGPGSVGLITLDTYRVGAHEQLRTYGRMLGIVAH 333

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +   +    L              +++IDT G    +           R +  +     
Sbjct: 334 LAHDRAALQDLL------GLLSGKKMVLIDTTGVAPRDPR--------KREMLDVLDLPH 379

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            + L VL+A    + L  V       G+   I++K+D   + G  +  ++ H++ +  + 
Sbjct: 380 VNRLLVLNAGCHGDTLDDVLTAFKTTGSQQAILSKVDEAVKLGPALDALIRHQMVLRGVT 439

Query: 291 VGEGIN-DLEPFVAKDFSA 308
            G+ +  D E   A    +
Sbjct: 440 NGQRVPEDWETADAHKLIS 458


>gi|54297697|ref|YP_124066.1| flagellar biosynthesis regulator FlhF [Legionella pneumophila str.
           Paris]
 gi|53751482|emb|CAH12900.1| Flagellar biosynthesis protein FlhF [Legionella pneumophila str.
           Paris]
          Length = 379

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 85/208 (40%), Gaps = 17/208 (8%)

Query: 95  MLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDT 149
           +L  +++      S R     +   VG  GVGKTT + K++ +  +     K+ L   DT
Sbjct: 141 ILSQMTEQLPIRDSSRIEEGGIYAFVGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDT 200

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AA +QL ++          ++     A +  +           +++IDTAG   ++ 
Sbjct: 201 YRIAAQEQLILYGKILGVKVCIAQDEVSLARVLRQ------LNDKKLILIDTAGMNPSDE 254

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +   +  +   L+ +        + VL AT+    L      +        I+TK+D +
Sbjct: 255 RVTKQMTVLSNYLQSI------EKVLVLPATSHYQVLIDAIKRYQANHVDQCIITKLDES 308

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGIND 297
              GG I  V+   + + +L  G+ + +
Sbjct: 309 LAVGGAISAVIESNLALGYLTDGQRVPE 336


>gi|54294671|ref|YP_127086.1| flagellar biosynthesis regulator FlhF [Legionella pneumophila str.
           Lens]
 gi|53754503|emb|CAH15987.1| Flagellar biosynthesis protein FlhF [Legionella pneumophila str.
           Lens]
          Length = 379

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 85/208 (40%), Gaps = 17/208 (8%)

Query: 95  MLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDT 149
           +L  +++      S R     +   VG  GVGKTT + K++ +  +     K+ L   DT
Sbjct: 141 ILSQVTEQLPIRDSSRIEEGGIYAFVGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDT 200

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AA +QL ++          ++     A +  +           +++IDTAG   ++ 
Sbjct: 201 YRIAAQEQLILYGKILGVKVCIAQDEVSLARVLRQ------LNDKKLILIDTAGMNPSDE 254

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +   +  +   L+ +        + VL AT+    L      +        I+TK+D +
Sbjct: 255 RVTKQMTVLSNYLQSI------EKVLVLPATSHYQVLIDAIKRYQANHVDQCIITKLDES 308

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGIND 297
              GG I  V+   + + +L  G+ + +
Sbjct: 309 LAVGGAISAVIESNLALGYLTDGQRVPE 336


>gi|148359328|ref|YP_001250535.1| flagellar GTP-binding protein FlhF [Legionella pneumophila str.
           Corby]
 gi|296107375|ref|YP_003619075.1| flagellar GTP-binding protein FlhF [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281101|gb|ABQ55189.1| flagellar GTP-binding protein FlhF [Legionella pneumophila str.
           Corby]
 gi|295649276|gb|ADG25123.1| flagellar GTP-binding protein FlhF [Legionella pneumophila 2300/99
           Alcoy]
 gi|307610484|emb|CBX00056.1| flagellar biosynthesis protein FlhF [Legionella pneumophila 130b]
          Length = 379

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 85/208 (40%), Gaps = 17/208 (8%)

Query: 95  MLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDT 149
           +L  +++      S R     +   VG  GVGKTT + K++ +  +     K+ L   DT
Sbjct: 141 ILSQVTEQLPIRDSSRIEEGGIYAFVGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDT 200

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AA +QL ++          ++     A +  +           +++IDTAG   ++ 
Sbjct: 201 YRIAAQEQLILYGKILGVKVCIAQDEVSLARVLRQ------LNDKKLILIDTAGMNPSDE 254

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +   +  +   L+ +        + VL AT+    L      +        I+TK+D +
Sbjct: 255 RVTKQMTVLSNYLQSI------EKVLVLPATSHYQVLIDAIKRYQANHVDQCIITKLDES 308

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGIND 297
              GG I  V+   + + +L  G+ + +
Sbjct: 309 LAVGGAISAVIESNLALGYLTDGQRVPE 336


>gi|222100642|ref|YP_002535210.1| Flagellar biosynthesis protein FlhF [Thermotoga neapolitana DSM
           4359]
 gi|221573032|gb|ACM23844.1| Flagellar biosynthesis protein FlhF [Thermotoga neapolitana DSM
           4359]
          Length = 382

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 13/171 (7%)

Query: 128 IGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           + KL+ +      K +     DT+R AA +QLK +A+        +    +A       +
Sbjct: 193 LAKLAARFKIEEKKRVAILTLDTYRIAAAEQLKTYAEIMDIPMKIAYTPKEAE------Y 246

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +    K  DVL+IDTAGR H N + M+ +  +   +K      P+    V+      + +
Sbjct: 247 EMMALKDYDVLLIDTAGRSHQNDLQMSEVKALAEAVK------PNITFLVVAMNYKLDDM 300

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           +++    +V   T LI+TKMD T+  G  + I     IP+ F+  G+ + D
Sbjct: 301 KKILEKFSVVRPTHLILTKMDETSVYGTFVNISEITDIPIAFVTNGQRVPD 351


>gi|52842011|ref|YP_095810.1| flagellar biosynthesis regulator FlhF [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52629122|gb|AAU27863.1| flagellar GTP-binding protein FlhF [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 386

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 85/208 (40%), Gaps = 17/208 (8%)

Query: 95  MLMPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDT 149
           +L  +++      S R     +   VG  GVGKTT + K++ +  +     K+ L   DT
Sbjct: 148 ILSQVTEQLPIRDSSRIEEGGIYAFVGPTGVGKTTTLAKIAARFALRFGADKLGLVTMDT 207

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +R AA +QL ++          ++     A +  +           +++IDTAG   ++ 
Sbjct: 208 YRIAAQEQLILYGKILGVKVCIAQDEVSLARVLRQ------LNDKKLILIDTAGMNPSDE 261

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            +   +  +   L+ +        + VL AT+    L      +        I+TK+D +
Sbjct: 262 RVTKQMTVLSNYLQSI------EKVLVLPATSHYQVLIDAIKRYQANHVDQCIITKLDES 315

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGIND 297
              GG I  V+   + + +L  G+ + +
Sbjct: 316 LAVGGAISAVIESNLALGYLTDGQRVPE 343


>gi|295115824|emb|CBL36671.1| Signal recognition particle GTPase [butyrate-producing bacterium
           SM4/1]
          Length = 251

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 54/99 (54%)

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            M  +++  +  +    L ++DA TGQ+A+    MF+   G  G+I+TKMDG  RGG  +
Sbjct: 1   MMNELVEIKENVSVDQTLLIVDAMTGQDAVNVAGMFNDKIGIDGVILTKMDGDTRGGAAL 60

Query: 277 PIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            I      P+ ++G+GE ++DLE F     ++ I G  D
Sbjct: 61  SIKAVTGKPILYVGMGEKLSDLEQFYPDRMASRILGMGD 99


>gi|213416645|ref|ZP_03349789.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 94

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/94 (45%), Positives = 61/94 (64%)

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
           +K+LD  APH V+  +DA+TGQNA+ Q ++FH   G TG+ +TK+DGTA+GG +  +   
Sbjct: 1   MKKLDEEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQ 60

Query: 282 HKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             IP+ ++GVGE I DL PF A DF   +    D
Sbjct: 61  FGIPIRYIGVGERIEDLRPFKADDFIEALFARED 94


>gi|206896257|ref|YP_002246705.1| flagellar GTP-binding protein [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738874|gb|ACI17952.1| flagellar GTP-binding protein [Coprothermobacter proteolyticus DSM
           5265]
          Length = 331

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 104/298 (34%), Gaps = 35/298 (11%)

Query: 31  GITDIISSRRLDDGVREELEDLL--IRSDIGVAVAQK-----------IVEELLTKRYAK 77
           GI    +   LD+   E LE  +  + + +     ++             +ELL K  A 
Sbjct: 49  GIEQSSAKGNLDN--LEALEKAIKRLDAAVSALAVKEDELDALSRQTGFSKELLVKARA- 105

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-KKMS 136
            V  +     + + +   L    +  +  F   P V++++G  GVGKTT   KL+   + 
Sbjct: 106 -VPTEDWKNTLRQYLSNKL-EFVRLESIKFQTFPKVVVLLGPTGVGKTTTAAKLAGYLLL 163

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           +  +       DTFR+ A++Q K++    +              +       A+      
Sbjct: 164 ERNVSSGFVTIDTFRAGAVEQTKLFGKAMNLPVEVVRRPHQMQKVL------AKLPDAHY 217

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           + +DT GR       +  I   +  L+   P      +  L+A   +  +++   +    
Sbjct: 218 VFVDTIGRNPKEIGKLTEIKMYLDELEEWIP------VLCLNAGLRKEEMQKAFEYFNKV 271

Query: 257 -GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
                 I+TK+D        +  +  + +    L  G+ + D   F        + G 
Sbjct: 272 FHIEYFILTKVDEAENISSAVEFMAENGLKTLALTNGQNVPDDLLF-PD--IENVLGM 326


>gi|221112103|ref|XP_002157121.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 209

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 14/176 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A    K+   +  + ++  +++ V     +E+   L+ +D+ V + QK+   +      
Sbjct: 13  LADLGRKITSALKSLSNATVINEEVLNLMLKEICAALLEADVNVQLVQKLRANIKNAANF 72

Query: 77  KDVSVQRVLYD-----VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++++            V + + K++ P  K +      + +VI+ VG+ G GKTT   KL
Sbjct: 73  EEMAAGTNKRRLIQHTVFQELCKLVDPGVKAWQ-PIKGKNNVIMFVGLQGSGKTTTCTKL 131

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +      G K  L   DTFR+   D++ I  +  +     S  G     LA EA  
Sbjct: 132 AYYYQRKGWKTCLVCADTFRA---DKINILVETINTSGH-SHTGEYLTQLAREAID 183


>gi|222112263|ref|YP_002554527.1| AAA ATPase [Acidovorax ebreus TPSY]
 gi|221731707|gb|ACM34527.1| AAA ATPase [Acidovorax ebreus TPSY]
          Length = 530

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 100/260 (38%), Gaps = 24/260 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           LIR+    A+++ ++E L     A+D      +  + E++ + L   +            
Sbjct: 255 LIRAGYSPALSRAVLEHLPEHLGAQDA-----VRWLMEVLERNLR--TDAQTLPLYEEGG 307

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +  +VG  GVGKTT   KL+   +       V L   DT+R  A +QL+ +        V
Sbjct: 308 IFAMVGATGVGKTTTTAKLAALCARIHGPASVGLITLDTYRVGAHEQLRSYGRMLGV--V 365

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                  AA         ++      ++IDT G    +           R L  +     
Sbjct: 366 AHLAHDRAALQDLLGLLSSKKM----VLIDTTGVAPRDPR--------KRDLLDVLALPG 413

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VL+A++  + L  V       G+   I++K+D   + G  I  ++ H++ +  + 
Sbjct: 414 VKRLLVLNASSHGDTLDDVLTGFKTTGSQQAILSKVDEAVKLGPAIDALIRHQMVLRGVT 473

Query: 291 VGEGIN-DLEPFVAKDFSAV 309
            G+ +  D E   A+   + 
Sbjct: 474 NGQRVPEDWEAADARKLVSA 493


>gi|121596108|ref|YP_988004.1| GTP-binding signal recognition particle [Acidovorax sp. JS42]
 gi|120608188|gb|ABM43928.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Acidovorax sp. JS42]
          Length = 530

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 100/260 (38%), Gaps = 24/260 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           LIR+    A+++ ++E L     A+D      +  + E++ + L   +            
Sbjct: 255 LIRAGYSPALSRAVLEHLPEHLGAQDA-----VRWLMEVLERNLR--TDAQTLPLYEEGG 307

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +  +VG  GVGKTT   KL+   +       V L   DT+R  A +QL+ +        V
Sbjct: 308 IFAMVGATGVGKTTTTAKLAALCARIHGPASVGLITLDTYRVGAHEQLRSYGRMLGV--V 365

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                  AA         ++      ++IDT G    +           R L  +     
Sbjct: 366 AHLAHDRAALQDLLGLLSSKKM----VLIDTTGVAPRDPR--------KRDLLDVLALPG 413

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VL+A++  + L  V       G+   I++K+D   + G  I  ++ H++ +  + 
Sbjct: 414 VKRLLVLNASSHGDTLDDVLTGFKTTGSQQAILSKVDEAVKLGPAIDALIRHQMVLRGVT 473

Query: 291 VGEGIN-DLEPFVAKDFSAV 309
            G+ +  D E   A+   + 
Sbjct: 474 NGQRVPEDWEAADARKLVSA 493


>gi|226225719|ref|YP_002759825.1| putative flagellar biosynthesis protein FlhF [Gemmatimonas
           aurantiaca T-27]
 gi|226088910|dbj|BAH37355.1| putative flagellar biosynthesis protein FlhF [Gemmatimonas
           aurantiaca T-27]
          Length = 292

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 17/201 (8%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADR 164
               RP+ I +VG  G GKTT   KL+ +    G         DT+R   ++QL  +A+ 
Sbjct: 81  KVDGRPYCIALVGPTGAGKTTTAAKLAVRRGMFGAARPGLLTIDTYRVGGMEQLATYAEL 140

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
               F       +      +A  +  ++  D++I+DT GR   ++ L      +      
Sbjct: 141 ADVPFEVVYDEKEV-----DAAMKRLSQTCDIVIVDTPGRSPASAELTERWRSL------ 189

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFH----AVAGTTGLIMTKMDGTARGGGLIPIVV 280
           LD  AP  V  V+ AT   +    +   +    A  GTT L+++K+D   R  G+  + +
Sbjct: 190 LDTIAPDEVHLVIPATLRADLAVDIGRAYRGTRAHCGTTHLLLSKLDEVPRETGVTDLAL 249

Query: 281 THKIPVYFLGVGEGIN-DLEP 300
           + ++P  ++  G+ +  DL+P
Sbjct: 250 SLEMPTRWIADGQDVPADLKP 270


>gi|86157783|ref|YP_464568.1| GTP-binding signal recognition particle [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774294|gb|ABC81131.1| GTP-binding signal recognition particle SRP54, G-domain protein
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 378

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 112/291 (38%), Gaps = 32/291 (10%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLD------DGVREELEDLLIRSDIGVAVAQKIV 67
           +R+L +    T   L     +  + R L       D         L+   +  ++A+ +V
Sbjct: 93  LRRLRRSVEETRRALAAVTLEARAGRELQLPPAGADAYAR-----LVARGMEPSLAEGLV 147

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
              L           R    V +L+ + L+P   P+  D      VI  VG  GVGKTT 
Sbjct: 148 RSALE---LGGAEPARAWRAVKDLLGERLVPCRAPWLHDGRR---VIAAVGPTGVGKTTT 201

Query: 128 IGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           + K++ + + +   +V     DT+R    +QL  +A       + +    +       A 
Sbjct: 202 LAKVAARALLETRKRVAFVTVDTYRLGGAEQLTRYAGIMEVPVLVARDRGELG----RAL 257

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +  +   VD++++DTAG        +     ++R + R+  H        + A TG   L
Sbjct: 258 E--RLSDVDLVLVDTAGHASVED--VERQAALVRSIPRVQLH------LTVSAATGALEL 307

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             V   +       L++TK+D  A  G ++   V    P+  +  G+ + +
Sbjct: 308 AAVADRYRALAPDRLVLTKLDEAAGPGSVLSAAVRVCRPIACVTDGQRVPE 358


>gi|207109480|ref|ZP_03243642.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 185

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 16/184 (8%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD---AGLKVMLAAGDTFRSAAIDQL 158
           P + +   +  ++++VG  GVGKTT + KL+ + S       KV +   D +R  A++QL
Sbjct: 14  PEDLNLRQK-RILMLVGPTGVGKTTTLAKLAARYSRMLAKKYKVGIITLDNYRIGALEQL 72

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
             +A++                +   A +    +  D +++DT G    +   +AG+ + 
Sbjct: 73  SWYANKMKMSIEA------VIDIKDFAKEIEALEYCDFILVDTTGHSQYDKEKIAGLKEF 126

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           I      D      V  VL  TT    ++ +     V G   LI TK+D +   G L  +
Sbjct: 127 I------DGGYNIDVSLVLSVTTKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSL 180

Query: 279 VVTH 282
           V   
Sbjct: 181 VHES 184


>gi|145642025|ref|ZP_01797597.1| Signal recognition particle protein [Haemophilus influenzae R3021]
 gi|145273296|gb|EDK13170.1| Signal recognition particle protein [Haemophilus influenzae
           22.4-21]
          Length = 137

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 10/135 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++      
Sbjct: 2   FENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++V+      Q  L  V   + K +   ++  N   +  P VIL+ G+ G GKTT +GKL
Sbjct: 62  EEVNKSLTPGQEFLKIVQRELEKAMGEANESLNL-ATQPPAVILMAGLQGAGKTTSVGKL 120

Query: 132 SKKMSDAGLKVMLAA 146
           +K + +   K  ++ 
Sbjct: 121 AKFLRERHKKESVSG 135


>gi|254497493|ref|ZP_05110286.1| flagellar biosynthesis regulator FlhF [Legionella drancourtii
           LLAP12]
 gi|254353308|gb|EET12050.1| flagellar biosynthesis regulator FlhF [Legionella drancourtii
           LLAP12]
          Length = 410

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 75/187 (40%), Gaps = 14/187 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +   +G  GVGKTT + K+  +  +     K+ +   DT+R AA +QL ++         
Sbjct: 164 IYAFLGPTGVGKTTTLAKIGARFALRFGADKLGMVTMDTYRMAAQEQLMLYGKILGVQVC 223

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +      + +  +   +       +++IDTAG   ++  +   +  +   ++ +     
Sbjct: 224 LAHDEVSLSRVLRQLSDKK------LILIDTAGMNPSDERVARQMQILSTHMQSIAK--- 274

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              + VL AT+    L      +        I+TK+D     GG +   +   + V +L 
Sbjct: 275 ---VLVLPATSHYQVLIDAIHRYETNYVDQCILTKLDEAQAIGGALSAAIETGLRVSYLT 331

Query: 291 VGEGIND 297
            G+ + +
Sbjct: 332 HGQRVPE 338


>gi|270489363|ref|ZP_06206437.1| SRP54-type protein, helical bundle domain protein [Yersinia pestis
           KIM D27]
 gi|270337867|gb|EFA48644.1| SRP54-type protein, helical bundle domain protein [Yersinia pestis
           KIM D27]
          Length = 171

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 10/139 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +  +   
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKERAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT + KL
Sbjct: 62  HEVNKSLTPGQEFVKIVKNELISAMGEVNNELNL-AAQPPAVVLMAGLQGAGKTTSVAKL 120

Query: 132 SKKMSDAGLKVMLAAGDTF 150
            K + +   K   +   TF
Sbjct: 121 GKFLKEKQKKKCWSCLLTF 139


>gi|242381496|emb|CAY39211.1| signal recognition particle docking protein [Streptomyces
           clavuligerus ATCC 27064]
          Length = 328

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +    +   + +L    A +   L +G+  ++S   LD+   EE+E+ L+ +D+GVA  Q
Sbjct: 107 ETPEPAAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLTADVGVAPTQ 166

Query: 65  KIVEELLTKRY--AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNG 121
           ++VE L  +          +       EL+  +   L +    +     P V++VVGVNG
Sbjct: 167 ELVERLRERVKVLGTRTPDELRTLLREELLTLVGTDLDRAVKTESGLDTPGVVMVVGVNG 226

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKTT  GKL++ +   G  V+L A DTFR+AA DQL+ W +R  A  V    G D A++
Sbjct: 227 TGKTTTTGKLARVLVADGRSVVLGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASI 286

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           A++A K+  A+  DV++IDTAGRLH  + LM  +GK+ RV++
Sbjct: 287 AFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVE 328


>gi|120613050|ref|YP_972728.1| GTP-binding signal recognition particle [Acidovorax citrulli
           AAC00-1]
 gi|120591514|gb|ABM34954.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Acidovorax citrulli AAC00-1]
          Length = 524

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 101/264 (38%), Gaps = 34/264 (12%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP- 111
           LIR+    ++A+ ++E L       ++     +  + E++ + L         D   RP 
Sbjct: 250 LIRAGYSPSLARAVLERLPE-----ELGAAHAVRWLMEVLERNL-------RTDAHQRPL 297

Query: 112 ----HVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
                V  +VG  GVGKTT   KL+   +       V L   DT+R  A +QL+ +    
Sbjct: 298 YEEGGVYAMVGATGVGKTTTTAKLAALCARIHGPASVGLITLDTYRVGAHEQLRSYGRML 357

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                 +   +    L              +++IDT G    +           R +  +
Sbjct: 358 GVVAHLAHDRAALQDLL------GLLAGKKMVLIDTTGIAPRDPR--------KRDMLDV 403

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                 + L VL+A    + L  V +    AG+   I++K+D   + G  +  ++ H++ 
Sbjct: 404 LDLPGVNRLLVLNAGCHGDTLDDVLIGFRTAGSQQAILSKVDEAVKLGPAVDALIRHQMV 463

Query: 286 VYFLGVGEGIN-DLEPFVAKDFSA 308
           +  +  G+ +  D E   A+   A
Sbjct: 464 LRGVTNGQRVPEDWEAADAQKLIA 487


>gi|293392762|ref|ZP_06637080.1| signal recognition particle protein [Serratia odorifera DSM 4582]
 gi|291424621|gb|EFE97832.1| signal recognition particle protein [Serratia odorifera DSM 4582]
          Length = 180

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 10/120 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L   + +I    RL +        E+   L+ +D+ + V +  +  +      
Sbjct: 2   FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +V+      Q  +  V   +   +  ++   N   +  P V+L+ G+ G GKTT +GKL
Sbjct: 62  HEVNKSLTPGQEFVKIVKSELIAAMGEVNTELNL-AAQPPAVVLMAGLQGAGKTTSVGKL 120


>gi|154249074|ref|YP_001409899.1| flagellar biosynthesis regulator FlhF [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153010|gb|ABS60242.1| GTP-binding signal recognition particle SRP54 G- domain
           [Fervidobacterium nodosum Rt17-B1]
          Length = 372

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 130/310 (41%), Gaps = 34/310 (10%)

Query: 3   NQKVASESLSWIRKLTKGFASTS-------------LKLKEGITDIISSRRLDDGVR-EE 48
            ++  SE    I KL +  + +               K+   +  +ISS+R ++    E 
Sbjct: 57  KKEQQSEEKGQIYKLQEILSKSKTNNPQNVEEISEIKKMMVELKSMISSQRTNEPQWVES 116

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
               L + DI   ++ K++E   +K   +++        +  ++ +M +P       D  
Sbjct: 117 FRKALKKQDIDDEISDKLIEY--SKMKYQELDFSNENTRL--ILSEMFLPFINTSVPDLK 172

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            R   +L  G  GVGKTT + KL+ K+      +V +   DT+R AA+DQLK +A     
Sbjct: 173 GR---VLFAGPTGVGKTTTLAKLAAKLKLSEKKRVAVITLDTYRIAAVDQLKTYAMLLDV 229

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               +    +A        +       DV++IDTAGR   N + M+ I  M  ++     
Sbjct: 230 PIRVAYTPKEAK------LEVEALSDYDVILIDTAGRSQKNDLHMSEIKAMSEIVS---- 279

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             P     V+        +++V    ++   T +I++KMD T+  G  + +    K P+ 
Sbjct: 280 --PDFTFLVIGMQYRSEDVKEVLTKFSMISPTHVILSKMDETSALGHFVNVPNFLKAPIA 337

Query: 288 FLGVGEGIND 297
           F+  G+ + D
Sbjct: 338 FITNGQRVPD 347


>gi|288942620|ref|YP_003444860.1| flagellar biosynthetic protein FlhF [Allochromatium vinosum DSM
           180]
 gi|288897992|gb|ADC63828.1| flagellar biosynthetic protein FlhF [Allochromatium vinosum DSM
           180]
          Length = 432

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 94/252 (37%), Gaps = 21/252 (8%)

Query: 62  VAQKIVE----ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +A+++VE    + L +     +   +   D    +   L             R  V+ +V
Sbjct: 107 IAERLVECGFDDTLARSLIGGLQEDQTHEDAWSRLRTRLAASVATVQPSVLERGGVLALV 166

Query: 118 GVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  G GKTT + +L+           V L   D  R  A  QL+ +        +  E  
Sbjct: 167 GPTGAGKTTTLSRLALHRIRRLGPDSVTLVTFDRQRIGAHKQLQAFGQMAGVPVILLENE 226

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
            D  ALA  +          ++++DT GR   ++       ++  +++            
Sbjct: 227 RDLIALANRSASDH------LILVDTEGRSARDAAERKLFAQIRHLVE-------IETWL 273

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
           V+ AT     LRQV         T L++TK+D   R G ++ +++   + + F   G+ I
Sbjct: 274 VIPATHQAGVLRQVLKAFQSCEPTALVLTKIDEAERLGEILSVLLEQHLGLVFQSDGQRI 333

Query: 296 NDLEPFVAKDFS 307
              E F   D +
Sbjct: 334 E--EDFHKADTA 343


>gi|297727991|ref|NP_001176359.1| Os11g0153600 [Oryza sativa Japonica Group]
 gi|255679801|dbj|BAH95087.1| Os11g0153600 [Oryza sativa Japonica Group]
          Length = 248

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KL+    D+++   + + +R+ +   L+ +D+ + V ++ V  
Sbjct: 68  RAEMFGQLTTGLESAWNKLRGV--DVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVSS 124

Query: 70  LLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  K    D+       Q+++  V + + K++        +  S  P VIL+ G+ GVGK
Sbjct: 125 ISEKALGSDLIRGVRPEQQLVKIVHDELVKLMGGEVSDLVFAKSG-PTVILLAGLQGVGK 183

Query: 125 TTVIGKLSKKMS 136
           TTV  KL+  + 
Sbjct: 184 TTVCAKLAFYLK 195


>gi|257487161|ref|ZP_05641202.1| Signal recognition particle protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 133

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 60/133 (45%), Gaps = 10/133 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G GKTT  GKL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAGKTTTAGKL 120

Query: 132 SKKMSDAGLKVML 144
           ++ + +   K ++
Sbjct: 121 ARFLKERKKKTVM 133


>gi|195940204|ref|ZP_03085586.1| signal recognition particle protein [Escherichia coli O157:H7 str.
           EC4024]
          Length = 228

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%)

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           GQ+A    + F+     TG+++TK+DG ARGG  + I      P+ FLGVGE    LEPF
Sbjct: 1   GQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPF 60

Query: 302 VAKDFSAVITGCLD 315
                ++ I G  D
Sbjct: 61  HPDRIASRILGMGD 74


>gi|224154027|ref|XP_002337428.1| predicted protein [Populus trichocarpa]
 gi|222839177|gb|EEE77528.1| predicted protein [Populus trichocarpa]
          Length = 162

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 10/160 (6%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
            A     +   I  + ++  +D+        E+   L++SD+   + + +   +      
Sbjct: 3   LAQLGGSISRAIQQMSNATIIDEKALNDCLNEITRALLQSDVQFKLVRDMQTNIKKIVNL 62

Query: 77  KDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            D++       + +      + K+L P    F      +  V++ VG+ G GKTT   K 
Sbjct: 63  DDLAAGHNKRRIIQQAIFNELCKILDPGKSSFTPK-KGKTSVVMFVGLQGSGKTTTCTKY 121

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +      G K  L   DTFR+ A DQLK  A +    F  
Sbjct: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161


>gi|326319088|ref|YP_004236760.1| flagellar biosynthetic protein FlhF [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375924|gb|ADX48193.1| flagellar biosynthetic protein FlhF [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 533

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 99/264 (37%), Gaps = 34/264 (12%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP- 111
           LIR+    ++A+ ++E L       ++     +  + E++ + L         D   RP 
Sbjct: 259 LIRAGYSPSLARAVLERLPE-----ELGAGHAVRWLMEVLERNL-------KTDAHQRPL 306

Query: 112 ----HVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
                V  +VG  GVGKTT   KL+   +       V L   DT+R  A +QL+ +    
Sbjct: 307 YEEGGVYAMVGATGVGKTTTTAKLAALCARIHGPASVGLITLDTYRVGAHEQLRSYGRML 366

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                 +   +    L              +++IDT G    +           R +  +
Sbjct: 367 GVVAHLAHDRAALQDLL------GLLAGKKMVLIDTTGIAPRDPR--------KRDMLDV 412

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                 + L VL+A    + L  V       G+   I++K+D   + G  +  ++ H++ 
Sbjct: 413 LDLPGVNRLLVLNAGCHGDTLDDVLTGFRTGGSQQAILSKVDEAVKLGPAVDALIRHQMV 472

Query: 286 VYFLGVGEGIN-DLEPFVAKDFSA 308
           +  +  G+ +  D E   A+   A
Sbjct: 473 LRGVTNGQRVPEDWEAADAQKLIA 496


>gi|222833281|gb|EEE71758.1| predicted protein [Populus trichocarpa]
          Length = 356

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 103/274 (37%), Gaps = 30/274 (10%)

Query: 17  LTKGFASTSLKLKEGITDIISSR---RLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           L    AS    L+     + S      + D +RE L + ++ +     +++ ++  L   
Sbjct: 102 LRGELASMRSMLERQFAGLSSGAGNVAVGDPLRESLFEWMVNAGFSGQLSRTLISRL--- 158

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
                      +  + + I K +  LS         +  V+ ++G  GVGKTT   KL+ 
Sbjct: 159 --PVGTDRPAAMSWIRQEIAKKVPVLSNE--DALFDQGGVLALIGPTGVGKTTTTAKLAA 214

Query: 134 KM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +        ++ L   D FR  A +QL+I+ D         +  +D       A    + 
Sbjct: 215 RYVLRHGADRLALLTTDRFRIGAHEQLRIYGDILGVPVHAVKDAADLR----FALSAMKD 270

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           K   ++IIDT G    +  L   I  +  V       AP   + +L+     + L +V  
Sbjct: 271 KH--LVIIDTVGMSQRDRSLSDQIAMLAGV------QAPMQRVLLLNGAAHGDTLNEVVH 322

Query: 252 FH------AVAGTTGLIMTKMDGTARGGGLIPIV 279
            +         G  G I++K+D     G ++ +V
Sbjct: 323 AYRHDAAGDAGGIDGCIISKLDEATHLGSVLDVV 356


>gi|319764530|ref|YP_004128467.1| flagellar biosynthetic protein flhf [Alicycliphilus denitrificans
           BC]
 gi|330826746|ref|YP_004390049.1| flagellar biosynthetic protein FlhF [Alicycliphilus denitrificans
           K601]
 gi|317119091|gb|ADV01580.1| flagellar biosynthetic protein FlhF [Alicycliphilus denitrificans
           BC]
 gi|329312118|gb|AEB86533.1| flagellar biosynthetic protein FlhF [Alicycliphilus denitrificans
           K601]
          Length = 520

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 99/260 (38%), Gaps = 24/260 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           LIR+    A+++ ++E L  +  A+D      +  + +++ + L   ++           
Sbjct: 245 LIRAGYSPALSRAVLEHLPEQLGAQDA-----VRWLMDVLERNLHTDAQALPLYEEGG-- 297

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +  +VG  GVGKTT   KL+   +       V L   DT+R  A +QL+ +         
Sbjct: 298 IYAMVGATGVGKTTTTAKLAALCARIHGPASVGLITLDTYRVGAHEQLRSYGRMLGVVAH 357

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +   +    L              +++IDT G    +           R L  +     
Sbjct: 358 LAHDRAALQDLL------GLLAGKKMVLIDTTGVAPRDPR--------KRELLDVLQLPG 403

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L VL+A++  + L  V       G+   I++K+D   + G  +  ++ H++ +  + 
Sbjct: 404 VHRLLVLNASSHGDTLDDVLTGFKTDGSQQAILSKVDEAVKLGPALDALIRHQMVLRGVT 463

Query: 291 VGEGIN-DLEPFVAKDFSAV 309
            G+ +  D E   A      
Sbjct: 464 NGQRVPEDWEAADAHKLVRA 483


>gi|239995149|ref|ZP_04715673.1| flagellar biosynthesis protein [Alteromonas macleodii ATCC 27126]
          Length = 469

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 78/185 (42%), Gaps = 14/185 (7%)

Query: 128 IGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           + KL+ +         V +   DT+R AA +QL  +          ++   + A L ++ 
Sbjct: 274 VAKLAARYAQKYGAESVAMITIDTYRIAAYEQLATYGKIIGCTVRKAQTSEELADLLFQ- 332

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                 +   +++IDTAG    +S L   I ++ +      P+       V  A T   A
Sbjct: 333 -----LRHKRLVLIDTAGFSQRDSRL---IKQIKQFDNGQMPNVKK--YLVAQANTQYPA 382

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAK 304
           L+++   +     +G I TK+D     G ++   V +++PV ++  G+ +  D++   AK
Sbjct: 383 LQRIIQAYDDIELSGCIFTKLDECYSLGEVLSAAVEYQLPVSYVTDGQKVPEDIKIAEAK 442

Query: 305 DFSAV 309
              + 
Sbjct: 443 SLVSA 447


>gi|309808818|ref|ZP_07702703.1| SRP54-type protein, helical bundle domain protein [Lactobacillus
           iners LactinV 01V1-a]
 gi|308167944|gb|EFO70077.1| SRP54-type protein, helical bundle domain protein [Lactobacillus
           iners LactinV 01V1-a]
          Length = 134

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 63/134 (47%), Gaps = 10/134 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + S KL++ +  +    ++ +        E+   L+ +D+   V +K ++ +  +  
Sbjct: 2   AFENLSEKLQKALRKLTGKGKISENDINQASREIRLALLEADVNFKVVKKFIKTIKAEAL 61

Query: 76  AKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K+V       Q+++  V++ + KM+   +     +  H P +I++VG+ G GKTT +GK
Sbjct: 62  GKEVQESLNPGQQIIKIVNDELTKMMGSDTASI-IEAKHIPTIIMMVGLQGTGKTTTVGK 120

Query: 131 LSKKMSDAGLKVML 144
           L+  +     +   
Sbjct: 121 LANYLIKNKKQGHF 134


>gi|332994106|gb|AEF04161.1| flagellar biosynthesis protein [Alteromonas sp. SN2]
          Length = 463

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 78/187 (41%), Gaps = 18/187 (9%)

Query: 128 IGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           + KL+ +         V +   DT+R AA +QL  +          ++   + + L ++ 
Sbjct: 265 VAKLAARYAQKYGADSVAMITIDTYRIAAFEQLATYGKIIGCTVRKAQSSEELSDLLFQ- 323

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV--LQVLDATTGQ 243
                 +   +++IDTAG    +S L       I+ + + D      V    V  A T  
Sbjct: 324 -----LRHKRLVLIDTAGFSQRDSRL-------IKQINQFDNGQMQPVKKYLVAQANTQY 371

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFV 302
            AL+++   +     +G I TK+D     G ++   V +++PV ++  G+ +  D++   
Sbjct: 372 AALQRIIDAYEGVELSGCIFTKLDECYSLGEVLSAAVEYQLPVSYVTDGQKVPEDIKIAE 431

Query: 303 AKDFSAV 309
           AK   + 
Sbjct: 432 AKSLVSA 438


>gi|323703186|ref|ZP_08114839.1| flagellar biosynthetic protein FlhF [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531845|gb|EGB21731.1| flagellar biosynthetic protein FlhF [Desulfotomaculum nigrificans
           DSM 574]
          Length = 434

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/274 (25%), Positives = 110/274 (40%), Gaps = 25/274 (9%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           + L+  DI   VA+ +++  L      +VS         +LI   L+  +         R
Sbjct: 178 ETLLDIDIQEGVARALLDAALRDLKG-EVSD--------DLIRIALINKTTEILKSAYRR 228

Query: 111 PHV---ILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           P     +  VG  GVGKTT + KL+ K       KV L    T+R  + DQLKI+ +   
Sbjct: 229 PEDARFMTFVGPPGVGKTTTLTKLATKFKLLEKKKVALITVYTYRYGSADQLKIYGETLD 288

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                 E+    A L     + A     D ++IDT GR   N+  +  +   + V+    
Sbjct: 289 VPV---EVVMTPAELRQAVEQHADK---DHILIDTVGRTSKNTGQVLELKGFLEVIP--- 339

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                 +  VL A+T    L +      +A     I TK D T   G ++ +V    +P+
Sbjct: 340 --EQQDIFLVLAASTKDRDLFRTIRDFRIAHFNKFIFTKTDETETLGSMLNVVSRTGLPI 397

Query: 287 YFLGVGEGI-NDLEPFVAKDFSAVITGCLDYGEE 319
            +   G+ I +DLE    K  + ++    D  EE
Sbjct: 398 AYYTDGQSIPDDLEKAYPKKLAHLLFRSADRYEE 431


>gi|153810625|ref|ZP_01963293.1| hypothetical protein RUMOBE_01009 [Ruminococcus obeum ATCC 29174]
 gi|149833021|gb|EDM88103.1| hypothetical protein RUMOBE_01009 [Ruminococcus obeum ATCC 29174]
          Length = 111

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/110 (43%), Positives = 65/110 (59%), Gaps = 3/110 (2%)

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           M  + K+ R+L+R  P A    L VLD TTGQNAL Q + F  VA   G+I+TK+DGTA+
Sbjct: 1   MEELRKIYRILEREYPEAYLETLVVLDGTTGQNALAQAKQFAEVANVNGIILTKLDGTAK 60

Query: 272 GGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321
           GG  + I     IPV ++GVGE I+DL+ F A  F   +    D  E+ +
Sbjct: 61  GGIAVAIQSELDIPVKYIGVGETIDDLQKFDADAFVNAL---FDIDEKDL 107


>gi|291613027|ref|YP_003523184.1| flagellar biosynthetic protein FlhF [Sideroxydans lithotrophicus
           ES-1]
 gi|291583139|gb|ADE10797.1| flagellar biosynthetic protein FlhF [Sideroxydans lithotrophicus
           ES-1]
          Length = 438

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 82/209 (39%), Gaps = 17/209 (8%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   R  V  +VG  GVGKTT   K++ +        KV L   D++R  A +QLKI+  
Sbjct: 208 DVVARGGVYALVGPTGVGKTTTTAKMAARAVVRYGADKVALVTTDSYRIGAHEQLKIYGK 267

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                        D           +  K   +++IDT G    +S +         V  
Sbjct: 268 ILGVSVHAVRDTEDLK------LTLSGLKHKHLVLIDTMGVGQRDSRVAEQAQMFDTVGV 321

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           +         L +L+AT+    L  V   +   G  G I TK+D     G ++ +VV HK
Sbjct: 322 QR--------LLLLNATSSGGTLEDVVKMYGGTGVIGCIPTKLDEAVTLGTVLDVVVRHK 373

Query: 284 IPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           + ++++  G+ +  DL     +     + 
Sbjct: 374 LTMHYVASGQRVPEDLHEVNLEYLLHRVF 402


>gi|313608189|gb|EFR84222.1| putative cell division protein [Listeria monocytogenes FSL F2-208]
          Length = 107

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/95 (48%), Positives = 63/95 (66%)

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG 272
             + K+ RV+ R  P+APH VL VLDATTGQNA  Q + F      TG+I+TK+DGTA+G
Sbjct: 1   NELEKVKRVITREIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKG 60

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           G +I I     IPV F+G+GE ++DL+ F A ++ 
Sbjct: 61  GIVIAIRNELDIPVKFVGLGEQMDDLQAFDANEYV 95


>gi|301299290|ref|ZP_07205576.1| SRP54-type protein, helical bundle domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853134|gb|EFK80732.1| SRP54-type protein, helical bundle domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 138

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 10/137 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+  I  +    ++ +     V  E+   L+ +D+   V +  V+ + ++  
Sbjct: 2   AFEGLTERLQNAIGKLRRKGKIGESDVKEVMREIRLALLEADVNFKVVKDFVKTVRSRAI 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E + K++   + P N   +  P +I++VG+ G GKTT   K
Sbjct: 62  GAEVLESLTPAQQIVKIVNEELVKVMGEEAAPLNKS-AKIPTIIMMVGLQGAGKTTTASK 120

Query: 131 LSKKMSDAGLKVMLAAG 147
           L+ K+            
Sbjct: 121 LANKVKKRKKCTTFYDC 137


>gi|332140597|ref|YP_004426335.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550619|gb|AEA97337.1| flagellar biosynthesis protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 477

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 14/185 (7%)

Query: 128 IGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           + KL+ +         V +   DT+R AA +QL  +          ++   + A L ++ 
Sbjct: 282 VAKLAARYAQKYGADSVAMITIDTYRIAAYEQLATYGKIIGCTVRKAQTSEELADLLFQ- 340

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                 +   +++IDTAG    +S L   I ++ +      P        V  A T   A
Sbjct: 341 -----LRHKRLVLIDTAGFSQRDSRL---IKQIKQFDNGQMP--KVKKYLVAQANTQYPA 390

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAK 304
           L+++   +     +G I TK+D     G ++   V +++PV ++  G+ +  D++   AK
Sbjct: 391 LQRIIKAYDDIELSGCIFTKLDECYSLGEVLSAAVEYQLPVSYVTDGQKVPEDIKIAEAK 450

Query: 305 DFSAV 309
              + 
Sbjct: 451 SLVSA 455


>gi|197122903|ref|YP_002134854.1| GTP-binding signal recognition particle SRP54 G- domain
           [Anaeromyxobacter sp. K]
 gi|196172752|gb|ACG73725.1| GTP-binding signal recognition particle SRP54 G- domain
           [Anaeromyxobacter sp. K]
          Length = 382

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 117/307 (38%), Gaps = 33/307 (10%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLD------DGVREELEDLLIRSDIGVAVAQKIV 67
           +R+L +    T   L     +  + R L       D         L+   +  A+A+ +V
Sbjct: 97  LRRLRRSVEETRRALAAVTLEARAGRELQLPPAGADAYAR-----LVGRGMEPALAEGLV 151

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
              L           R    V +L+ + L+P   P+  D      VI  VG  GVGKTT 
Sbjct: 152 RSALE---LGGADPGRAWRAVKDLLGERLVPCRAPWLHDGRR---VIAAVGPTGVGKTTT 205

Query: 128 IGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           + K++ + + +   +V     DT+R    +QL  +A       + +    +       A 
Sbjct: 206 LAKVAARALLETRKRVAFVTVDTYRLGGAEQLARYAGIMEVPVLVARDRGELG----RAL 261

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +  +   VD++++DTAG        +     ++R + R+  H        + A  G   L
Sbjct: 262 E--RLSDVDLVLLDTAGHASVED--VERQAALVRSVPRVQLH------LTVSAAAGALEL 311

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKD 305
             V   +       L++TK+D  A  G ++   V    P+  +  G+ +  D+    A +
Sbjct: 312 AAVADRYRALAPDRLVLTKLDEAAGPGSVLSAAVRVCRPIACVTNGQRVPEDVHALGAGE 371

Query: 306 FSAVITG 312
              ++ G
Sbjct: 372 LVDLVAG 378


>gi|220917695|ref|YP_002492999.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955549|gb|ACL65933.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 380

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 111/291 (38%), Gaps = 32/291 (10%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLD------DGVREELEDLLIRSDIGVAVAQKIV 67
           +R+L +    T   L     +  + R L       D         L+   +  A+A+ +V
Sbjct: 95  LRRLRRSVEETRRALAAVTLEARAGRELQLPPAGADAYAR-----LVGRGMEPALAEGLV 149

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
              L           R    V +L+ + L+P   P+  D      VI  VG  GVGKTT 
Sbjct: 150 RSALE---LGGADPGRAWRAVKDLLGERLVPCRAPWLHDGRR---VIAAVGPTGVGKTTT 203

Query: 128 IGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           + K++ + + +   +V     DT+R    +QL  +A       + +    +       A 
Sbjct: 204 LAKVAARALLETRKRVAFVTVDTYRLGGAEQLARYAGIMEVPVLVARDRGELG----RAL 259

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +  +   VD++++DTAG        +     ++R + R+  H        + A  G   L
Sbjct: 260 E--RLSDVDLVLLDTAGHASVED--VERQAALVRSVPRVQLH------LTVSAAAGALEL 309

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
             V   +       L++TK+D  A  G ++   V    P+  +  G+ + +
Sbjct: 310 AAVADRYRALAPDRLVLTKLDEAAGPGSVLSAAVRVCRPIACVTNGQRVPE 360


>gi|255029042|ref|ZP_05300993.1| signal recognition particle protein [Listeria monocytogenes LO28]
          Length = 135

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 10/128 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2   AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             DV       Q+V+  V E +  ++              P VI++VG+ G GKTT  GK
Sbjct: 62  GADVMKSLTPGQQVIKIVQEELTSLMGGEESKIGT-ADRPPTVIMMVGLQGAGKTTTSGK 120

Query: 131 LSKKMSDA 138
           L+  +   
Sbjct: 121 LANLLRKK 128


>gi|309800531|ref|ZP_07694682.1| signal recognition particle protein [Streptococcus infantis SK1302]
 gi|308115842|gb|EFO53367.1| signal recognition particle protein [Streptococcus infantis SK1302]
          Length = 138

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 60/128 (46%), Gaps = 10/128 (7%)

Query: 20  GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
            F + + +L+    ++    ++ +       +E+   L+ +D+ + V +  ++++  +  
Sbjct: 2   AFENLTERLQNVFKNLRKKGKITESDIQEATKEIRLALLEADVALPVVKDFIKKVRERAV 61

Query: 76  AKDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +V       Q+++  V+E + ++L   +          P +I++VG+ G GKTT  GK
Sbjct: 62  GHEVIDTLNPAQQIIKIVNEELTEVLGSDTAEI-IKSPKIPTIIMMVGLQGAGKTTFAGK 120

Query: 131 LSKKMSDA 138
           L+ K+   
Sbjct: 121 LANKLKKE 128


>gi|67624587|ref|XP_668576.1| signal recognition particle protein SRP54 [Cryptosporidium hominis
           TU502]
 gi|54659796|gb|EAL38359.1| signal recognition particle protein SRP54 [Cryptosporidium hominis]
          Length = 296

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 45/91 (49%)

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           +    P  V+ V+D+  GQ    Q   F        +I+TK+DG A+GGG +  V     
Sbjct: 5   VMETNPDDVVFVMDSHIGQACYDQAMAFCNAVDVGSVIITKLDGHAKGGGALSAVAATGA 64

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           P+ F+G GE  ++ EPF  K F + + G  D
Sbjct: 65  PIIFIGTGEHFDEFEPFETKGFVSRLLGLGD 95


>gi|332527912|ref|ZP_08403948.1| GTP-binding signal recognition particle [Rubrivivax benzoatilyticus
           JA2]
 gi|332112488|gb|EGJ12281.1| GTP-binding signal recognition particle [Rubrivivax benzoatilyticus
           JA2]
          Length = 353

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 94/252 (37%), Gaps = 28/252 (11%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   L+      ++ +K+VE L              L   + ++ + L    +    +  
Sbjct: 79  LTQKLLGCGFSPSLVRKLVEGLPG--------GCDELAWAAGVLERNLATGERESPLEDV 130

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               V  +VG  GVGKTT   KL+           + L   D +R  A +QL+ +     
Sbjct: 131 GG--VYALVGPTGVGKTTSTAKLAAAFATRHGAANLGLITLDAYRVGAHEQLRTYGRILG 188

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM-IRVLKRL 225
                +   +    L      +       +++IDTAG    ++     +  +  R + + 
Sbjct: 189 VPVHTAHDRASLEDLLDLLSAKK------MVLIDTAGMAQRDARTRELLDMLSHRSINK- 241

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                   L V++A      + +V + +  A   G++++KMD   +    +  ++ +K+ 
Sbjct: 242 --------LLVVNAAAQGETIEEVLLAYGAAACRGIVLSKMDEAVKLAPALDALIRYKLK 293

Query: 286 VYFLGVGEGIND 297
           V  +  G+ + +
Sbjct: 294 VLAVANGQRVPE 305


>gi|319944144|ref|ZP_08018422.1| GTP-binding signal recognition particle [Lautropia mirabilis ATCC
           51599]
 gi|319742638|gb|EFV95047.1| GTP-binding signal recognition particle [Lautropia mirabilis ATCC
           51599]
          Length = 802

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 88/234 (37%), Gaps = 25/234 (10%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPH------VILVVGVNGVGKTTVIGKLSKK--MSDAG 139
           + +++ + L  +++                 V  ++G  GVGKTT I K++    +    
Sbjct: 557 LRQMLMRALAGVNQGAGLALGEERTLFDAGGVFALIGPTGVGKTTSIAKIAAHHVLRHGP 616

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             + L   D +R  A +QL+ +          ++       L  E       +   +++I
Sbjct: 617 RSLALITADVYRIGAQEQLRAFGRMLGVPVQVAQDREVLQRLLKE------HEGCRLVLI 670

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DTAG    +  +      +          +    + V++A     +L +V        T 
Sbjct: 671 DTAGIGQRDDRVGQLTSAL--------EVSQVRRVLVMNAAAQSGSLEEVLGAFGARDTA 722

Query: 260 GLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
           G++++K+D     G  +  +V H++P+     G+ +   E + A +F   +   
Sbjct: 723 GVLLSKVDEAVGLGACLDALVRHRLPLLGYADGQRVP--EDYHAVNF-GRLVEM 773


>gi|309804278|ref|ZP_07698355.1| signal recognition particle protein [Lactobacillus iners LactinV
           11V1-d]
 gi|308163681|gb|EFO65951.1| signal recognition particle protein [Lactobacillus iners LactinV
           11V1-d]
          Length = 128

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 52/98 (53%)

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
           +++   +D   P +++ V DA TGQ A    E F++    TGLI+TK+DG  RGG  + I
Sbjct: 1   MKLKNIVDVAHPENIILVADAMTGQVAATVAEGFNSKLKLTGLILTKLDGDTRGGAALSI 60

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
                +P+ F G GE + +L+ F     ++ I G  D 
Sbjct: 61  REVTGLPILFTGQGEKLTELDTFHPDRMASRILGMGDM 98


>gi|89902468|ref|YP_524939.1| GTP-binding signal recognition particle [Rhodoferax ferrireducens
           T118]
 gi|89347205|gb|ABD71408.1| GTP-binding signal recognition particle SRP54, G-domain [Rhodoferax
           ferrireducens T118]
          Length = 479

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 96/259 (37%), Gaps = 24/259 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           LIR+     +A+ I+E +  +  A D      +  V +++ + L   +            
Sbjct: 207 LIRAGYSPTLARTILERMPEEMGATD-----SVRWVMDILERNLK--TDAATRPIHEEGG 259

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
              +VG  GVGKTT   KL+   +       V L   DT+R  A +QL+ +         
Sbjct: 260 TYALVGATGVGKTTTAAKLAGLCARTHGPASVGLITLDTYRVGAHEQLRAFGRMLGVVAH 319

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +   +    L              +++IDT G   N+           R +  +     
Sbjct: 320 LAHDRAALQDLLN------LLGNKKMVLIDTTGLAPNDPR--------KRGMLDVLDLPG 365

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            + L VL+A    ++L  V       G    +++K D  A+ G  +  +V H++ +  + 
Sbjct: 366 VNRLLVLNAGGHGDSLDDVVSSFKSTGAQQAVLSKTDEAAKLGPALDAIVRHQLVLRGVT 425

Query: 291 VGEGIN-DLEPFVAKDFSA 308
           +G+ +  D E   A     
Sbjct: 426 MGQKVPEDWEAADAAKLVR 444


>gi|134300230|ref|YP_001113726.1| flagellar biosynthesis regulator FlhF [Desulfotomaculum reducens
           MI-1]
 gi|134052930|gb|ABO50901.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 405

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 110/271 (40%), Gaps = 19/271 (7%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           + L+  DI  AVA+ +++  L K    +        D+ EL+            +     
Sbjct: 151 EKLLEMDIQPAVAKTLLDAALLKIKDSEA------LDMVELVLINQTAELLKAPYKGEKN 204

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              +  +G  GVGKTT + KL+ K        V L    T+R  + D LKI+ D      
Sbjct: 205 SRFMTFIGQPGVGKTTTLTKLATKYQLLEKKNVALITLYTYRYGSTDHLKIYGDNLDLPV 264

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
              E+      L  +A ++      D + IDT GR  NN+  +  +   + V+   +   
Sbjct: 265 ---EVVMTPTEL-SQAIEKHS--NKDYIFIDTVGRSSNNTGQVLELKSFLEVIPSEN--- 315

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              +  VL+A+T    L +      +      I TK+D TA  G ++ +V    +P+ + 
Sbjct: 316 --DIFLVLNASTKDRDLFRTIHDFRITSFNKFIFTKVDETATLGSMLNVVGKTGLPIAYY 373

Query: 290 GVGEGI-NDLEPFVAKDFSAVITGCLDYGEE 319
             G+ I +D++    K  + ++    D  E+
Sbjct: 374 TDGQSIPDDIKRAHPKKIANLLFRSADRYED 404


>gi|157099212|gb|ABO33259.2| Hypothetical protein F38A1.8 [Caenorhabditis elegans]
          Length = 468

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 15/159 (9%)

Query: 23  STSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
             S      I  ++  ++L       + E++ + LI  ++    A+KI + +++K   K 
Sbjct: 309 KQSGGWFSMIKGLVGEKKLSAEDLNPLIEKMRENLILKNVASEPAEKICQSVVSKLEGKV 368

Query: 79  VS-----VQRVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           V+      Q V   V E + ++L P      L          RP+VI+  GVNGVGK+T 
Sbjct: 369 VNNFSRVAQEVKTAVRESLVQLLTPKHRVDILRDVIEAKRDGRPYVIVFCGVNGVGKSTN 428

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           + K++  +++   +V++AAGDTFR+ A++QL+  A   +
Sbjct: 429 LAKITFWLTENKHRVLIAAGDTFRAGAVEQLRTHARYLN 467


>gi|255021387|ref|ZP_05293435.1| Flagellar biosynthesis protein FlhF [Acidithiobacillus caldus ATCC
           51756]
 gi|254969250|gb|EET26764.1| Flagellar biosynthesis protein FlhF [Acidithiobacillus caldus ATCC
           51756]
          Length = 384

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 70/195 (35%), Gaps = 16/195 (8%)

Query: 122 VGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
            GKTT I KL+ +  +      V L   DT+R A ++QL I+A              D  
Sbjct: 184 AGKTTTIAKLAARKVLRHGPHAVALFTTDTYRIAGVEQLGIYARILGVPLEVVHDAQDLL 243

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
                  ++ + +    + IDT G    +  L   +  +  V   L          +L A
Sbjct: 244 ----RGLQKYEDRP--WIFIDTMGLSPRDPRLRQQLEWLEAVGPDL------HRYLLLPA 291

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE 299
              +  L  +   +     +  I++K+D     G  +  +  H +P+ +   G+ +   E
Sbjct: 292 GLDRRGLGSMLAPYEQLSLSAAILSKVDEAPACGAALEWLEQHHLPLAYFSDGQKVP--E 349

Query: 300 PFVAKDFSAVITGCL 314
                 +S ++    
Sbjct: 350 DLHEARWSYLLASMG 364


>gi|156186088|gb|ABU55362.1| cell division ABC transporter periplasmic substrate-binding protein
           FtsY [Callosobruchus chinensis]
 gi|156186090|gb|ABU55363.1| cell division ABC transporter periplasmic substrate-binding protein
           FtsY [Callosobruchus chinensis]
          Length = 102

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 66/102 (64%)

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT IGKL+ K  + G  VML A DTFR+AA  QL IWA+ +    V  E GSD+ ++A
Sbjct: 1   GKTTTIGKLAYKYKEMGKSVMLVACDTFRAAASKQLNIWAENSDCLIVTGEHGSDSPSVA 60

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
           Y A  QA    VDV++IDTAGRL NN  LM  + K+ R +K+
Sbjct: 61  YRAVSQAIKDNVDVVLIDTAGRLQNNVNLMEKLSKIYRTIKK 102


>gi|289208352|ref|YP_003460418.1| flagellar biosynthetic protein FlhF [Thioalkalivibrio sp. K90mix]
 gi|288943983|gb|ADC71682.1| flagellar biosynthetic protein FlhF [Thioalkalivibrio sp. K90mix]
          Length = 424

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 55/253 (21%), Positives = 96/253 (37%), Gaps = 23/253 (9%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
             E L  +  A  +     +    E +   L       + D      V+ +VG  GVGKT
Sbjct: 133 FSESL-ARSLAGSILDDSTVEQAWERLRARLSGAIATRHPDILDEGGVLALVGPTGVGKT 191

Query: 126 TVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           T + +++ +         V L   DT R  A  QL+ +A           +  +   L  
Sbjct: 192 TTLARIALRQIRRMGADSVTLVTLDTQRIGATRQLQAFAQMAGVSL---RVLQNPRELRD 248

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHN---NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
            A   A+A+   +++ DTAG+  +   +  L AG    +R               V+ AT
Sbjct: 249 MA---ARAEDGHLILADTAGQAPSVVGDESLFAGWPDRVRC----------ESWLVVSAT 295

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLE 299
           T  +ALR+V           L++TK+D   + G  + +++   + + F+  G+ I  D  
Sbjct: 296 TQASALRRVLDAFRKTEPAALVLTKLDEAEQLGETLSVLLDQHLGLTFVSDGQRIAEDFH 355

Query: 300 PFVAKDFSAVITG 312
                D +    G
Sbjct: 356 RVETGDLTRRALG 368


>gi|171058303|ref|YP_001790652.1| GTP-binding signal recognition particle [Leptothrix cholodnii SP-6]
 gi|170775748|gb|ACB33887.1| GTP-binding signal recognition particle SRP54 G- domain [Leptothrix
           cholodnii SP-6]
          Length = 592

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 91/251 (36%), Gaps = 25/251 (9%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L   LI      A+ +K+ + L          V   +    +++ + L         +  
Sbjct: 302 LTTKLIDCGFSPALIRKLADGLKD-------DVHDEMAWAGDVLQRNLQTGESEAPLEDQ 354

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               V  +VG  GVGKTT   KL+           + L   D +R  A +QL+ +     
Sbjct: 355 GG--VFALVGSTGVGKTTSTAKLAAAFATRHGAANLGLITLDAYRLGAHEQLRAYGRILG 412

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                +        L  +  +  +     +++IDTAG    ++     +  +        
Sbjct: 413 VPVHTAHDRVALEDLL-DLLQSKK-----MVLIDTAGLAQRDARTRELLDML-------- 458

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
            H     L V++A      +  V + +      G++++KMD   + G  +  ++ H++ V
Sbjct: 459 SHPSIKRLLVVNAAAQGETIEDVLVAYKATQAKGIVLSKMDEAVKLGPAVDALIRHRLKV 518

Query: 287 YFLGVGEGIND 297
             +  G+ + +
Sbjct: 519 VAVANGQRVPE 529


>gi|288923591|ref|ZP_06417701.1| GTP-binding signal recognition particle SRP54 helical bundle
           [Frankia sp. EUN1f]
 gi|288345053|gb|EFC79472.1| GTP-binding signal recognition particle SRP54 helical bundle
           [Frankia sp. EUN1f]
          Length = 130

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 10/129 (7%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L +  T +    RL D   +    E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FDTLSSRLDKVFTSLRGRGRLTDADIDATAREIRVALLEADVALPVVRGFVAAVKERARG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +VS      Q+V+  V+E +  +L   +    +     P VIL+ G+ G GKTT+ GKL
Sbjct: 62  AEVSASLNPAQQVIKIVNEELVAILGGGTTTVRF-AKTPPTVILLAGLQGTGKTTLAGKL 120

Query: 132 SKKMSDAGL 140
            + +   G 
Sbjct: 121 GRWLKAQGH 129


>gi|308273534|emb|CBX30136.1| hypothetical protein N47_D29450 [uncultured Desulfobacterium sp.]
          Length = 351

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 86/186 (46%), Gaps = 14/186 (7%)

Query: 128 IGKLSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           I KL+ +++     KV L + D +R  AI+QLK +A+      + +    D  A      
Sbjct: 175 IAKLAAQLTLKNKIKVGLISIDNYRIGAIEQLKTYANILGIPCMPAFNRKDLVA------ 228

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
              +   VD +IIDTAG+   +   +  +  +I    +++ H       +L+  T +  +
Sbjct: 229 AIGRLSNVDAIIIDTAGQSQYDGKRIEELRNIITDDLKIESH------LLLNVATAEEEM 282

Query: 247 RQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKD 305
            ++ +  ++      I TK+D + + G +I  ++  ++PV +L  G+ + +D+E      
Sbjct: 283 NKIAINFSLLEYKSYIFTKLDESEKYGSVINQLMKKQLPVSYLTTGQNVPDDIEHASKNR 342

Query: 306 FSAVIT 311
            + ++ 
Sbjct: 343 VAKLLF 348


>gi|224151767|ref|XP_002189896.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata]
          Length = 173

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 49/87 (56%)

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
            P +++ V+DA+ GQ    Q + F        +I+TK+DG A+GGG +  V   K P+ F
Sbjct: 1   QPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIF 60

Query: 289 LGVGEGINDLEPFVAKDFSAVITGCLD 315
           +G GE I+D EPF  + F + + G  D
Sbjct: 61  IGTGEHIDDFEPFKTQPFISKLLGMGD 87


>gi|74317196|ref|YP_314936.1| flagellar biosynthetic protein FlhF [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056691|gb|AAZ97131.1| flagellar biosynthetic protein FlhF [Thiobacillus denitrificans
           ATCC 25259]
          Length = 375

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 91/241 (37%), Gaps = 21/241 (8%)

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           R  + +        + +++ + L  ++       +   +   +VG  G GKTT + KL+ 
Sbjct: 119 RLPRGLDDDATQRWLRQVLIRNLPCVAAQDELLDAGGCY--ALVGSTGSGKTTTLAKLAA 176

Query: 134 KMSDAGLKVML--AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +      +   A D +R  A  QL ++A+        +    + A L        + 
Sbjct: 177 RAVEHHGSEGVALVAADPYRVGAHAQLAVYAELLGVALHLAGDPDELANLLP------RL 230

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
               +++IDTAG   ++           R   RLD       L V+ A+    A+ Q   
Sbjct: 231 SAHTLVLIDTAGFAPSDPR--------SRAFDRLDA-IGVQRLAVVAASQQGAAIEQAMA 281

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVI 310
                G    I+TK+D T + G  +  ++ H++ + ++  G+ +  DL    A       
Sbjct: 282 RFGR-GAKACILTKLDETPQLGAALDSLIRHRLALAYVTGGQRVPEDLHRPSAAYLVDRA 340

Query: 311 T 311
            
Sbjct: 341 L 341


>gi|114777583|ref|ZP_01452564.1| GTP-binding signal recognition particle SRP54, G-domain
           [Mariprofundus ferrooxydans PV-1]
 gi|114552054|gb|EAU54571.1| GTP-binding signal recognition particle SRP54, G-domain
           [Mariprofundus ferrooxydans PV-1]
          Length = 353

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 76/193 (39%), Gaps = 12/193 (6%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
            +   + H +L  G  G GK+T+I KL+   S  G+++ L + DT R   +D LK +A  
Sbjct: 150 INPGQQQHTVLFSGPAGCGKSTLIAKLAAHYSMKGIRIALISTDTERMGGLDSLKAYAST 209

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
               F      SDAA +  +           +L+ID+ G              + R    
Sbjct: 210 LGVPFFPLNKLSDAANILRQTQSAQ------LLLIDSEGWSPRRD------IGLRRQTGL 257

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
            D         VL A   +    Q+   H  +  T L  +K+D T + G ++   +   +
Sbjct: 258 WDAMQCTERFLVLPANMDEEDGMQLLAHHTASAMTHLAFSKLDETQKPGKIVNWSIAAGM 317

Query: 285 PVYFLGVGEGIND 297
           P+ +   G  + +
Sbjct: 318 PLGYCSFGPEVPE 330


>gi|291538514|emb|CBL11625.1| flagellar biosynthetic protein FlhF [Roseburia intestinalis XB6B4]
          Length = 330

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 12/175 (6%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
             + L   L+ +++      +I++E   K      SV  +L +V +   KM++ L +P  
Sbjct: 157 FIKMLYRTLLENEVNEKYVNQILDE-AEKVMHSGSSVDAILSNVYQ---KMILKLGQPDT 212

Query: 105 WDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWA 162
              S  +P +I  VG  GVGKTT I K++ K     G+K+     DT+R AA +QL+++A
Sbjct: 213 ICVSGKKPRIIFFVGPTGVGKTTTIAKIASKYKLEMGMKIAFLTADTYRIAATEQLRVYA 272

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           +   A         +  A    A ++      D++ +DTAG  H N      + K
Sbjct: 273 NILDAPMSIIYSAEEMNA----AIERVSE--YDLIFVDTAGFSHKNDEQCNDMKK 321


>gi|312600981|gb|ADQ90236.1| Cell division protein ftsY [Mycoplasma hyopneumoniae 168]
          Length = 116

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 65/107 (60%)

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           + NN  LM  + K+ +++ +  P+APH  L V+DATTGQN + Q   F  +   +G+I+T
Sbjct: 1   MQNNVNLMQELKKINKIISQKVPNAPHESLLVIDATTGQNGVSQAANFAKITPVSGIILT 60

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           KMDGT++GG +  I     I V  +G+GE ++DL+PF    F   IT
Sbjct: 61  KMDGTSKGGIIFSIKDQLDISVKLVGLGEAMDDLQPFDLDLFIFAIT 107


>gi|222832233|gb|EEE70710.1| predicted protein [Populus trichocarpa]
          Length = 143

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 6/129 (4%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +++L  G   T       I  + +  +++D + EELED L+ +D GV   + ++ +L  +
Sbjct: 1   MQRLKTGLRKT----GSSIATVFTGTQINDALYEELEDALLMADTGVKATEHLLADLRRR 56

Query: 74  RYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
                 +    +  +       L+ PL KP      H+P VI+V GVNG GKTT IGKL+
Sbjct: 57  VKEAKATDPAAVKALLADALADLLRPLEKPLVIG-EHQPTVIMVAGVNGAGKTTSIGKLT 115

Query: 133 KKMSDAGLK 141
           + ++D G  
Sbjct: 116 RHLADEGQS 124


>gi|297690657|ref|XP_002822734.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           [Pongo abelii]
          Length = 568

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 15/167 (8%)

Query: 22  ASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
             T   +   +  ++ S+ L     + V +++ D LI  ++   +A ++ E +  K   K
Sbjct: 314 KGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGK 373

Query: 78  DVSVQRVLY-DVSELIHKMLMPLSKP----------FNWDFSHRPHVILVVGVNGVGKTT 126
            +     +   V + + + L+ + +P           +     RP+V+   GVNGVGK+T
Sbjct: 374 VMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKST 433

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            + K+S  + + G  V++AA DTFR+ A++QL+    R SA     +
Sbjct: 434 NLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK 480


>gi|332531603|ref|ZP_08407500.1| GTP-binding signal recognition particle [Hylemonella gracilis ATCC
           19624]
 gi|332038966|gb|EGI75395.1| GTP-binding signal recognition particle [Hylemonella gracilis ATCC
           19624]
          Length = 546

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 94/268 (35%), Gaps = 24/268 (8%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           VR  L   LIR+     +A+  +E++       D +    +  +  ++ + L        
Sbjct: 242 VRANLTLKLIRAGYSPNLARAALEKM-----PNDTTPAEAMRWMLAVLERNLKTDKNEPA 296

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWA 162
              +    +  +VG  GVGKTT   KL+ + +       V L   D++R  A +QL+ + 
Sbjct: 297 LHEAGG--IYALVGATGVGKTTTAAKLAAQCARDFGAASVGLITLDSYRIGAHEQLRTYG 354

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                    +   S    L              ++IIDT G    +           R +
Sbjct: 355 RMLGVVAHMAHDQSALQDLL------GLLSNRKMVIIDTTGVAPRDPR--------KREV 400

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
             +        L VL+A    +A  +       +G    ++TK D   + G  +   + H
Sbjct: 401 LDMLDLPGVQRLMVLNAANHGDAQDEAVASFRSSGAQHAVLTKTDEAVKLGPTLDAAIRH 460

Query: 283 KIPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           ++ +  +  G+ +  D     A     +
Sbjct: 461 RLVLRGVSCGQRVPEDWARADADQLVKL 488


>gi|88798982|ref|ZP_01114563.1| flagellar biosynthesis protein [Reinekea sp. MED297]
 gi|88778209|gb|EAR09403.1| flagellar biosynthesis protein [Reinekea sp. MED297]
          Length = 439

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 93/249 (37%), Gaps = 21/249 (8%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            + +LLT    ++           +L+ ++   L  P     S    V  + G  G GKT
Sbjct: 195 FIRKLLTHYDREESLDTNW----RQLMGRIATALPAPLYEPMSQG-GVFALTGPTGAGKT 249

Query: 126 TVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           T I KL+           V + + D F+    + LK   D    DF              
Sbjct: 250 TTIAKLAAHAVKKQGAESVAVVSMDWFQVGGQEILKSVTDILGVDFYPLTEQDSLQKTLQ 309

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
               ++      +++IDT+G    +++           L           L VL AT   
Sbjct: 310 RLSSKS------LVLIDTSGSA--DALKHWNQQTSNGALANRIQS-----LLVLPATMTP 356

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFV 302
           +A+ Q           G++++K+D +A  GG +  V+ ++ P++++  G+ I  D+E   
Sbjct: 357 SAVSQFISQLRGPRFHGVVLSKVDESASFGGALEPVLRNRWPLWYITTGQNIPQDIEVAD 416

Query: 303 AKDFSAVIT 311
            +  +  + 
Sbjct: 417 GRQLTRRLV 425


>gi|124268263|ref|YP_001022267.1| flagellar GTP-binding protein [Methylibium petroleiphilum PM1]
 gi|124261038|gb|ABM96032.1| flagellar GTP-binding protein [Methylibium petroleiphilum PM1]
          Length = 521

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 86/245 (35%), Gaps = 24/245 (9%)

Query: 61  AVAQKIVEE------LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
            + QK++E       +          V       + ++ + LM   +    +      V 
Sbjct: 243 KLTQKLLECGFSPVLIRKLVAGMTADVGDEQAWAASVLERNLMTGERELPIEDQGG--VF 300

Query: 115 LVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            ++G  GVGKTT   KL+           + L   D +R  A +QL+ +          +
Sbjct: 301 AMIGATGVGKTTSTAKLAAAFATRHGASNLGLITLDAYRLGAHEQLRAYGRILGVPVHTA 360

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              +    L       A+      ++IDTAG    ++     +  +         H   +
Sbjct: 361 HDRTALEDLLE--LLSAKKM----VLIDTAGVAQRDTRTRELLDML--------AHPSIN 406

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L V++       +  V   +  A   G++++K+D   +    +  V+ HK  +  +  G
Sbjct: 407 KLLVVNTAVQGETIDDVMTSYRAAACKGIVLSKLDEAVKLAPALDAVIRHKQKIVAVANG 466

Query: 293 EGIND 297
           + + +
Sbjct: 467 QRVPE 471


>gi|167946142|ref|ZP_02533216.1| signal recognition particle protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 222

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 34/59 (57%)

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
             TG+I+TK DG ARGG  + I      P+ FLGVGE ++ LEPF     ++ I G  D
Sbjct: 2   PLTGVILTKTDGDARGGAALSIRHITGKPIKFLGVGEKVDALEPFHPDRVASRILGMGD 60


>gi|15622442|dbj|BAB66433.1| 103aa long hypothetical signal recognition particle protein
           [Sulfolobus tokodaii str. 7]
          Length = 103

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 6/107 (5%)

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           +H +  L++ + +++++ K      P   + VLD+  G +AL Q + F    G   +I+T
Sbjct: 1   MHIDEDLVSELKRIVKIAK------PDLRILVLDSLAGNDALEQAKYFENNVGYDAVILT 54

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           K+D  A+GG ++ +      PV +LGVG+  + L PF A+ F   + 
Sbjct: 55  KVDADAKGGVILSLAYELNKPVIYLGVGQDYDSLIPFDAEWFIKRLF 101


>gi|320087982|emb|CBY97744.1| Cell division protein ftsY homolog [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 305

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV   
Sbjct: 180 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT 239

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI+  L      K +     LY  + + + ++L  + +P N +    P VIL+VGVNGV
Sbjct: 240 RKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKVDEPLNIE-GKTPFVILMVGVNGV 298

Query: 123 GKT 125
           GKT
Sbjct: 299 GKT 301


>gi|254517022|ref|ZP_05129080.1| flagellar biosynthesis protein [gamma proteobacterium NOR5-3]
 gi|219674527|gb|EED30895.1| flagellar biosynthesis protein [gamma proteobacterium NOR5-3]
          Length = 362

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/288 (20%), Positives = 111/288 (38%), Gaps = 34/288 (11%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGV-----REELEDLLIRSDIGVAVAQKIVEELLT- 72
           K       +L+  +   +  R   +          L   L+R  +   +A ++++ L + 
Sbjct: 66  KALEKELDRLRGILEKELGGRNWQEATVARGPLSALRQRLLRMGLSRVLAGELLDSLPSI 125

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKL 131
           +R  K            +LI   L    +  + +    P  I  V G  GVGKT+ + +L
Sbjct: 126 ERLDKGW----------QLIQLSLAERLQAKHIE--QIPGKITAVYGGTGVGKTSTVARL 173

Query: 132 SK--KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +           V L   D +R  A +QL  +AD        +      +     A ++ 
Sbjct: 174 AGADIQRLGPEMVGLITLDNYRIGAQEQLASFADTLGIPLFTANDRQSLSL----ALQKM 229

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           Q ++   + IDTAG   +++ L      +  + K      P   L VL A+   +  R +
Sbjct: 230 QGRR---IYIDTAGMSQHDARLRGQYALISELRK------PVRHLLVLAASAQASQCRAL 280

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
               +    +G I++K+D     GG++ +V++  +PV     G+ I D
Sbjct: 281 AANFSPRALSGAIISKVDEAQSLGGVLDVVISAGLPVLAYSSGQRIPD 328


>gi|42524689|ref|NP_970069.1| flagellar biosynthesis protein [Bdellovibrio bacteriovorus HD100]
 gi|39576899|emb|CAE78128.1| flagellar biosynthesis protein [Bdellovibrio bacteriovorus HD100]
          Length = 467

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 104/268 (38%), Gaps = 28/268 (10%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           + L ++ +   +A +I+        A        L   ++ + +  +      N   +  
Sbjct: 208 EKLTKAGMAPEIAAEILTTAQETLPA--------LKLKNKSLVEAYVARHVLDNTKIAQN 259

Query: 111 PH---VILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           P    +   VG  G GKT+ + K++ +M    G K+ L   DTF+  A DQ+KI+A   +
Sbjct: 260 PTQGKIHCFVGPAGSGKTSALIKMASQMVVREGKKIALFTTDTFKVGAADQMKIYAQILN 319

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             F      +D   L            VD +++D  G       L     + I++LK L 
Sbjct: 320 VPFSVIRTQNDWTNLMR------YLANVDCVLVDYTG-------LSLKSNEEIQMLKSLL 366

Query: 227 PHAPHS--VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           P A  +  +   L          ++   ++V G   +I T +D + + G +   +    +
Sbjct: 367 PPAALNPNIHLTLSTNAKDGDATELGRRYSVLGYKDVIFTSLDESTQHGTIYNFMKRFDV 426

Query: 285 PVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           P++  G+G  +  D E    +    +I 
Sbjct: 427 PLHSFGIGPRVPEDFEFATKERLLDLIF 454


>gi|332305674|ref|YP_004433525.1| flagellar biosynthetic protein FlhF [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173003|gb|AEE22257.1| flagellar biosynthetic protein FlhF [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 442

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 12/165 (7%)

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            V L   D++R AA +Q+  +A         ++   + + L ++       +   +++ID
Sbjct: 259 NVGLITLDSYRIAAYEQISTYARIIGCSVKKAQNAEELSDLLFQ------FRNKRLILID 312

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           TAG    +  L+  +  + +        A  +   V+ A +    ++Q    +      G
Sbjct: 313 TAGFGQRDVRLIKQLETLKQSTT-----ANINSYLVMQANSQYQVMQQTIAAYKQISLQG 367

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAK 304
            I TK+D     G  I   + HK+PV F+  G+ +  DL+   AK
Sbjct: 368 CIFTKIDECYSLGEAISAAIEHKLPVSFITDGQKVPEDLKVADAK 412


>gi|167538766|ref|XP_001751042.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770451|gb|EDQ84147.1| predicted protein [Monosiga brevicollis MX1]
          Length = 111

 Score =   99 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%)

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +DA+ G+    Q + F        +I+TK+DG A+GGG +  +   + PV F+G GE I 
Sbjct: 1   MDASIGKACFDQAKAFKDTVDVGAVIVTKLDGHAKGGGALSAIAATRSPVIFIGTGERIE 60

Query: 297 DLEPFVAKDFSAVITGCLD 315
           DLEPF  + F + + G  D
Sbjct: 61  DLEPFAPRSFVSKLLGLGD 79


>gi|270684409|ref|ZP_06222801.1| cell division protein FtsY-like protein [Haemophilus influenzae
           HK1212]
 gi|270316251|gb|EFA28201.1| cell division protein FtsY-like protein [Haemophilus influenzae
           HK1212]
          Length = 83

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 51/78 (65%)

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           +  LDA TGQNA+ Q ++F+   G TG+ +TK+DGTA+GG +  I    K+P+ ++GVGE
Sbjct: 1   MLTLDAGTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGE 60

Query: 294 GINDLEPFVAKDFSAVIT 311
            I DL  F AK+F   + 
Sbjct: 61  KIEDLREFNAKEFIEALF 78


>gi|317121834|ref|YP_004101837.1| GTP-binding signal recognition particle SRP54 G- domain
           [Thermaerobacter marianensis DSM 12885]
 gi|315591814|gb|ADU51110.1| GTP-binding signal recognition particle SRP54 G- domain
           [Thermaerobacter marianensis DSM 12885]
          Length = 451

 Score = 99.2 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 87/212 (41%), Gaps = 21/212 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK-MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            + VVG  G GKTTV+  L+ + + D G +V L A DT+R  A   L  +AD        
Sbjct: 231 TVAVVGPTGAGKTTVVASLAARALLDEGREVALLAADTYRLGATSALSAYADLLGVPL-- 288

Query: 172 SEIGSDAAALAYEAF----------KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            E+      +A  A           ++A  +   V ++DTAGR      + A +  +++ 
Sbjct: 289 -EVAYAPGEVAAWAGVRPGGADHRPEEATRRPDRVALVDTAGRNLLLPEVAAELAALVQA 347

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                   P  VL VL AT        +       G T L++TK+D        +     
Sbjct: 348 ------ARPDRVLLVLPATLAPAEAAALVGVGRRLGVTDLVLTKLDECLDPRAALARAAR 401

Query: 282 HKIPVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
             +P+  +GVG+ + +DL P   +     + G
Sbjct: 402 WGLPLALVGVGQRVPDDLLPGTPEALEPWLAG 433


>gi|154316352|ref|XP_001557497.1| hypothetical protein BC1G_04107 [Botryotinia fuckeliana B05.10]
 gi|150845907|gb|EDN21100.1| hypothetical protein BC1G_04107 [Botryotinia fuckeliana B05.10]
          Length = 325

 Score = 99.2 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 44/87 (50%)

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   + V+DA+ GQ A  Q + F   A    +I+TK DG A GGG I  V     P+ F+
Sbjct: 10  PDQTVMVMDASIGQQAEAQSKAFKETADFGAIIITKTDGHASGGGAISAVAATHTPIIFI 69

Query: 290 GVGEGINDLEPFVAKDFSAVITGCLDY 316
           G GE + DLE F    F + + G  D 
Sbjct: 70  GTGEHMLDLEKFAPTQFVSKLLGMGDM 96


>gi|218513807|ref|ZP_03510647.1| cell division protein [Rhizobium etli 8C-3]
          Length = 269

 Score = 98.8 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 1   MSNQKVASE-SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           +  Q +A +  LSW ++L  G A TS +L   IT + + R+LDD   ++LEDLLI++D+G
Sbjct: 132 VEPQPIAPQPKLSWFQRLRNGLARTSSQLTGQITALFTKRKLDDETLQDLEDLLIQADLG 191

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           V  A ++ + L ++RY KDV+ + V   ++  I K
Sbjct: 192 VETALRVTDTLASERYGKDVTGEDVSRIMASEIAK 226


>gi|264676581|ref|YP_003276487.1| GTP-binding signal recognition particle SRP54 [Comamonas
           testosteroni CNB-2]
 gi|262207093|gb|ACY31191.1| GTP-binding signal recognition particle SRP54 [Comamonas
           testosteroni CNB-2]
          Length = 538

 Score = 98.4 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 100/260 (38%), Gaps = 24/260 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           LIR+    A+A+ ++E+L     A D    R L  V E    +    ++P  ++      
Sbjct: 266 LIRAGYSPALARALIEKLPETLSAGD--AVRWLMQVLE--RNLRTDAAQPAIYEQGG--- 318

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT   KL+   +       V L   DT+R    DQL+ +A       V
Sbjct: 319 VFALVGATGVGKTTTTAKLAALCAAKHGPASVGLITLDTYRIGGHDQLRTYARMLG--MV 376

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +    AA        Q++      ++IDT G    +             +  +     
Sbjct: 377 AHQAHDKAALQDLLGLLQSKKM----VLIDTTGVAPRDPR--------KDEIMDVLAIEG 424

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L  ++A    +A   V       G+   I+TK+D   + G  +  ++ H+I +  + 
Sbjct: 425 VQQLLAVNAAAQGDAQDDVMQAFKARGSQHAILTKVDEAVKVGPSVDTLIRHQIQLRGVT 484

Query: 291 VGEGIN-DLEPFVAKDFSAV 309
            G+ +  D E   A+   + 
Sbjct: 485 NGQRVPEDFERANAQLLVSA 504


>gi|121607919|ref|YP_995726.1| GTP-binding signal recognition particle [Verminephrobacter eiseniae
           EF01-2]
 gi|121552559|gb|ABM56708.1| GTP-binding signal recognition particle SRP54, G- domain
           [Verminephrobacter eiseniae EF01-2]
          Length = 479

 Score = 98.4 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 104/274 (37%), Gaps = 46/274 (16%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-HKMLMPLSKPFNWDFSHRP 111
           LIR+     +A+ ++E +       D+S    +  + + + H +   L+ P  ++     
Sbjct: 203 LIRAAYSPTLARALLERM-----PPDLSAAASVRWLLQALAHNLRTDLAAPPLYEQGG-- 255

Query: 112 HVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            +  ++G  GVGKTT I KL+     S     V L   D +R  A +QL+          
Sbjct: 256 -IYALLGATGVGKTTTIAKLAALCARSHGADSVGLITMDGYRPGAHEQLRSHGRMLGI-- 312

Query: 170 VCSEIGSDAAALAYEAFKQAQAK-------KVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                      +A+ A  +A             +++IDT G    +           R L
Sbjct: 313 -----------VAHLAHDRAALHDLLGLFCGKKLVLIDTPGLPPRDPR--------KREL 353

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG------LIMTKMDGTARGGGLI 276
             L      + L VL+A    + L ++   +      G       I++K+D  A+ G  I
Sbjct: 354 TDLRDLPQVNRLLVLNAGCHGDTLDEMLGAYESGAGAGPPQALQAILSKLDEAAKPGPAI 413

Query: 277 PIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAV 309
             ++ H++ +  L  G+ +  D +   A+   + 
Sbjct: 414 DALIRHRVLLRGLTQGQRVPEDWQRADAQQLVSA 447


>gi|209964118|ref|YP_002297033.1| flagellar GTP-binding protein FlhF [Rhodospirillum centenum SW]
 gi|209957584|gb|ACI98220.1| flagellar GTP-binding protein FlhF [Rhodospirillum centenum SW]
          Length = 330

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 105/268 (39%), Gaps = 25/268 (9%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-------WD 106
           + + +G  V  ++ + LL     +++S Q +           L  LS   +         
Sbjct: 61  LAAPLGPDVQDQVSDVLLRHGVPQELSAQMLDSIADLSARDPLTALSAALDAVFAFSPLP 120

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            +  P  I++VG  G GKT  I KL  + +  G  V + + DT R+  I+QL+ +     
Sbjct: 121 ETRAPRPIMLVGPPGCGKTLTIAKLCARSALRGRPVGVISTDTVRAGGIEQLQAFTRVLK 180

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
              +  E      ALA  A +    + ++ ++ID+AGR   ++  M       R L+   
Sbjct: 181 LRLITVED---PPALAG-ALE--VQRGIEQVVIDSAGRNPYSAADM-------RDLREYL 227

Query: 227 PHAPHSVLQVLDATTGQNALRQVE--MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
             A    + V+ A  G +A+   E     A  G T L+ T++D   R G L+       +
Sbjct: 228 AAADVDPVLVMPA--GLDAVEAAETARAFADVGVTRLLPTRLDLARRLGSLLAAAHEGGL 285

Query: 285 PVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
            +        +   L P      + ++ 
Sbjct: 286 ALTDASTTPKVAEGLTPLSPTQLARLMM 313


>gi|221069311|ref|ZP_03545416.1| GTP-binding signal recognition particle SRP54 G- domain [Comamonas
           testosteroni KF-1]
 gi|220714334|gb|EED69702.1| GTP-binding signal recognition particle SRP54 G- domain [Comamonas
           testosteroni KF-1]
          Length = 537

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 100/260 (38%), Gaps = 24/260 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           LIR+    A+A+ ++E+L     A D    R L  V E    +    ++P  ++      
Sbjct: 265 LIRAGYSPALARALIEKLPETLSAGD--AVRWLMQVLE--RNLRTDAAQPAIYEQGG--- 317

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT   KL+   +       V L   DT+R    DQL+ +A       V
Sbjct: 318 VFALVGATGVGKTTTTAKLAALCAAKHGPASVGLITLDTYRIGGHDQLRTYARMLG--MV 375

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +    AA        Q++      ++IDT G    +             +  +     
Sbjct: 376 AHQAHDKAALQDLLGLLQSKKM----VLIDTTGVAPRDPR--------KDEIMDVLAIEG 423

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L  ++A    +A   V       G+   I+TK+D   + G  +  ++ H+I +  + 
Sbjct: 424 VQQLLAVNAAAQGDAQDDVMQAFKARGSQHAILTKVDEAVKVGPSVDTLIRHQIQLRGVT 483

Query: 291 VGEGIN-DLEPFVAKDFSAV 309
            G+ +  D E   A+   + 
Sbjct: 484 NGQRVPEDFERANAQLLVSA 503


>gi|328479900|gb|EGF48970.1| signal recognition particle-docking protein FtsY [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 81

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 51/79 (64%)

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           VL VLDATTGQNAL Q + F+     TG+++TK+DG+ +GG ++ I     +PV  +G+G
Sbjct: 1   VLLVLDATTGQNALNQAKEFNQTTQITGIVLTKLDGSGKGGIVLAIRNELHVPVKLVGLG 60

Query: 293 EGINDLEPFVAKDFSAVIT 311
           E ++DL+ F    F A + 
Sbjct: 61  EKMDDLQAFDPTKFVAGLL 79


>gi|221105682|ref|XP_002169513.1| PREDICTED: similar to signal recognition particle 54kDa, partial
           [Hydra magnipapillata]
 gi|221106571|ref|XP_002170252.1| PREDICTED: similar to signal recognition particle 54kDa, partial
           [Hydra magnipapillata]
          Length = 83

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 45/82 (54%)

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P +++ V+DA+ GQ    Q   F        +I+TK+DG A+GGG +  V     P+ F+
Sbjct: 2   PDNIIFVMDASIGQACEAQARAFKEKVDVASVIITKLDGHAKGGGALSAVAGTSSPIIFI 61

Query: 290 GVGEGINDLEPFVAKDFSAVIT 311
           G GE I+D EPF  + F + + 
Sbjct: 62  GTGEHIDDFEPFKTQPFVSKLL 83


>gi|215431868|ref|ZP_03429787.1| cell division protein ftsY [Mycobacterium tuberculosis EAS054]
 gi|289755034|ref|ZP_06514412.1| cell division protein ftsY [Mycobacterium tuberculosis EAS054]
 gi|289695621|gb|EFD63050.1| cell division protein ftsY [Mycobacterium tuberculosis EAS054]
          Length = 280

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 3/162 (1%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
                + +L    A +   L  G+  +I    LD+   +++ED L+ +D+G A    +V 
Sbjct: 118 PPEGRLERLRGRLARSQNALGRGLLGLIGGGDLDEDSWQDVEDTLLVADLGPAATASVVS 177

Query: 69  ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGKT 125
           +L ++  + +V  +     V  +++   L P           +  P V+LVVGVNG GKT
Sbjct: 178 QLRSRLASGNVRTEADARAVLRDVLINELQPGMDRSIRALPHAGHPSVLLVVGVNGTGKT 237

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           T +GKL++ +   G +V+L A DTFR+AA DQL+ WA R  A
Sbjct: 238 TTVGKLARVLVADGRRVVLGAADTFRAAAADQLQTWAARVGA 279


>gi|168008842|ref|XP_001757115.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691613|gb|EDQ77974.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 281

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 41/83 (49%)

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + V        A  Q + F        +I+TKMDG A+GGG +  V   K P+ F+G GE
Sbjct: 1   MDVDCPILQIAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPIIFIGTGE 60

Query: 294 GINDLEPFVAKDFSAVITGCLDY 316
            +++ E F  K F + + G  D+
Sbjct: 61  HMDEFEAFETKTFVSRLLGMGDW 83


>gi|109899337|ref|YP_662592.1| GTP-binding signal recognition particle [Pseudoalteromonas
           atlantica T6c]
 gi|109701618|gb|ABG41538.1| GTP-binding signal recognition particle SRP54, G-domain
           [Pseudoalteromonas atlantica T6c]
          Length = 443

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 12/169 (7%)

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                V L   D++R AA +Q+  +A         ++   + + L ++       +   +
Sbjct: 256 YGAQNVGLITIDSYRIAAYEQISTYARIIGCSVKKAQNAEELSDLLFQ------FRNKRL 309

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           ++IDTAG    +  L+  +  + +        A  S   V+ A +    ++Q    +   
Sbjct: 310 ILIDTAGFGQRDVRLIKQLETLKQSTT-----ANISSYLVMQANSQYQVMQQTIAAYKQI 364

Query: 257 GTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAK 304
              G I TK+D     G  I   + HK+ V F+  G+ +  DL+   AK
Sbjct: 365 SLQGCIFTKIDECYSLGEAISAAIEHKLSVSFITDGQKVPEDLKVADAK 413


>gi|299531275|ref|ZP_07044685.1| GTP-binding signal recognition particle SRP54 [Comamonas
           testosteroni S44]
 gi|298720682|gb|EFI61629.1| GTP-binding signal recognition particle SRP54 [Comamonas
           testosteroni S44]
          Length = 538

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 100/260 (38%), Gaps = 24/260 (9%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           LIR+    A+A+ ++E+L     A D    R L  V E    +    ++P  ++      
Sbjct: 266 LIRAGYSPALARALIEKLPETLSAGD--AVRWLMQVLE--RNLRTDAAQPAIYEQGG--- 318

Query: 113 VILVVGVNGVGKTTVIGKLSKKMS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V  +VG  GVGKTT   KL+   +       V L   DT+R    DQL+ +A       V
Sbjct: 319 VFALVGATGVGKTTTTAKLAALCAAKHGPASVGLITLDTYRIGGHDQLRTYARMLG--MV 376

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +    AA        Q++      ++IDT G    +             +  +     
Sbjct: 377 AHQAHDKAALQDLLGLLQSKKM----VLIDTTGVAPRDPR--------KDEIMDVLAIEG 424

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              L  ++A    +A   V       G+   I+TK+D   + G  +  ++ H+I +  + 
Sbjct: 425 VQQLLAVNAAAQGDAQDDVMQAFKARGSQHAILTKVDEAVKVGPSVDTLIRHQIQLCGVT 484

Query: 291 VGEGIN-DLEPFVAKDFSAV 309
            G+ +  D E   A+   + 
Sbjct: 485 NGQRVPEDFERANAQLLVSA 504


>gi|241650810|ref|XP_002410250.1| signal recognition particle receptor, alpha subunit, putative
           [Ixodes scapularis]
 gi|215501564|gb|EEC11058.1| signal recognition particle receptor, alpha subunit, putative
           [Ixodes scapularis]
          Length = 145

 Score = 96.1 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 17/137 (12%)

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
              A+  K+DV++IDTAGR+ +N  LM  + K+I V      ++P  VL V +A  G  A
Sbjct: 14  LLAARETKIDVVLIDTAGRMQDNEPLMRALAKLITV------NSPDLVLFVGEALVGNEA 67

Query: 246 LRQVEMFHAVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEG 294
           + Q+  F+                G+++TK D    + G  I +      P+ F+G G+ 
Sbjct: 68  VDQLVKFNQALADHSSQENPHLIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQT 127

Query: 295 INDLEPFVAKDFSAVIT 311
             DL+   AK     + 
Sbjct: 128 YIDLKTINAKAVVHALM 144


>gi|330944144|gb|EGH46267.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. pisi str. 1704B]
 gi|330980007|gb|EGH78273.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 77

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 45/71 (63%)

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
           TGQNA+ Q + F+     TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  
Sbjct: 1   TGQNAINQAKQFNQTVTLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRT 60

Query: 301 FVAKDFSAVIT 311
           F A+ F   + 
Sbjct: 61  FEAEPFVQALF 71


>gi|984323|gb|AAB17124.1| signal recognition particle 54 kDa subunit [Rattus norvegicus]
          Length = 70

 Score = 95.7 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 33/70 (47%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + VG+ G GKTT   KL+      G K  L   DTFR+ A DQLK  A +    F  S  
Sbjct: 1   MFVGLQGSGKTTTCSKLAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYT 60

Query: 175 GSDAAALAYE 184
             D   +A E
Sbjct: 61  EMDPVIIASE 70


>gi|293385100|ref|ZP_06630926.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis R712]
 gi|293389073|ref|ZP_06633545.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis S613]
 gi|291077577|gb|EFE14941.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis R712]
 gi|291081541|gb|EFE18504.1| signal recognition particle-docking protein FtsY [Enterococcus
           faecalis S613]
          Length = 271

 Score = 95.7 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  KG   T     + + ++ ++ R +D+   EELE+ LI +D+G   + KI E L  +
Sbjct: 134 EKYEKGLEKTRKTFGQRLNELFANFRSVDEDFFEELEETLIGADVGFDTSLKITEALRQE 193

Query: 74  RYAKDVSVQRVLYD-VSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIG 129
              ++V     + + + E +  +        N   + +P    VIL VGVNGVGKTT IG
Sbjct: 194 VKLRNVKKPAQVQNTIIEKMVDLYEEAGINENNAINLQPNGLTVILFVGVNGVGKTTSIG 253

Query: 130 KLSKKMSDAGLKVMLAAG 147
           KL+ +    G KV++AA 
Sbjct: 254 KLAHQYKLEGKKVLMAAA 271


>gi|70943367|ref|XP_741738.1| signal recognition particle 54 kDa protein [Plasmodium chabaudi
           chabaudi]
 gi|56520308|emb|CAH81656.1| signal recognition particle 54 kDa protein, putative [Plasmodium
           chabaudi chabaudi]
          Length = 279

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 41/80 (51%)

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           D+  GQ+   Q   F        +I+TK+DG A+GGG +  V     P+ F+G GE +ND
Sbjct: 1   DSHIGQSCHDQAMAFKNSVKVGSIIITKIDGHAKGGGALSAVSAIGCPITFIGTGEHVND 60

Query: 298 LEPFVAKDFSAVITGCLDYG 317
            E F AK F + + G  D  
Sbjct: 61  FEKFEAKSFVSRLLGLGDID 80


>gi|88704272|ref|ZP_01101986.1| flagellar biosynthetic protein FlhF [Congregibacter litoralis KT71]
 gi|88701323|gb|EAQ98428.1| flagellar biosynthetic protein FlhF [Congregibacter litoralis KT71]
          Length = 360

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 112/300 (37%), Gaps = 33/300 (11%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGV-----REELEDLLIRSDIGVAVAQKIVEELLTK 73
           K       +L+  +   + +R   +       +  L   L+R  +   +A  +++     
Sbjct: 64  KALERELQRLRGILDKELGTRSWQEAANTRAPQSVLRQRLLRMGLSRKLAGALLDH---H 120

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLS 132
              K V        V   + + L         D    P ++  V G  GVGKT+ + +L+
Sbjct: 121 ASGKRVEAGW--RQVLAALAERLQA------SDLEQLPGNITAVYGGTGVGKTSTVARLA 172

Query: 133 KK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
            +         V L   D +R  A +QL  +AD        +      +     A ++ Q
Sbjct: 173 GRDIQRLGPEMVGLITLDNYRIGAQEQLASFADALGIPLFSASDRHTLSL----ALRKMQ 228

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            ++   + IDTAG   +++ L      +  + K      P   L VL A+   +  R + 
Sbjct: 229 GRR---IYIDTAGMSQHDARLQGQYALIRELRK------PVRHLMVLAASAQPSQCRALA 279

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAV 309
              A    +G I++K+D     GG++ ++++ ++PV     G+ I  DL      D    
Sbjct: 280 ANFAPHTLSGAIISKVDEAQSLGGVLDVLISSQLPVLGYSDGQRIPEDLRRTDGMDLVRR 339


>gi|74317265|ref|YP_315005.1| flagellar biosynthesis regulator FlhF [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056760|gb|AAZ97200.1| putative flagellar biosynthetic protein FlhF [Thiobacillus
           denitrificans ATCC 25259]
          Length = 414

 Score = 93.8 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 15/171 (8%)

Query: 131 LSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           L+ +        K+ L   D++R    +QL+I+                    A      
Sbjct: 208 LAARFVVRHGADKLALLTTDSYRIGGHEQLRIYGKILGVAVHAVRDA------ADLRLAL 261

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           ++ +    ++IDT G    +  +   +  + +  K      P   L +L+AT+  + L +
Sbjct: 262 SELRNKHTVLIDTVGMSQRDRAVAEQVEMLGQAGK------PIKRLLLLNATSHGDTLNE 315

Query: 249 VEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DL 298
           V   +   G  G I++K+D  A  G  +   + H++ V++L  G+ +  DL
Sbjct: 316 VVEAYRTRGLDGCILSKIDEAASLGPALDCAIRHQLNVHYLATGQRVPEDL 366


>gi|297840121|ref|XP_002887942.1| hypothetical protein ARALYDRAFT_893071 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333783|gb|EFH64201.1| hypothetical protein ARALYDRAFT_893071 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 189

 Score = 93.4 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 34/156 (21%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  +   KLK    ++++   + + +R+ +   L+ +DI           
Sbjct: 56  RAEMFGQLTGGLEAAWSKLKG---EVLTKENIAEPMRD-IGRALLEADI----------- 100

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
                             + + + K++        +  S    VIL+ G+ GVGKT V  
Sbjct: 101 ------------------LHDELVKLMGGGVSELQFAKSGA-TVILLAGLQGVGKTMVCA 141

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           KL+  +   G   ML AGD +R A IDQL I  ++ 
Sbjct: 142 KLACYLKKQGKSCMLIAGDVYRPATIDQLVILGEQV 177


>gi|284106148|ref|ZP_06386246.1| signal recognition particle-docking protein FtsY [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283830083|gb|EFC34351.1| signal recognition particle-docking protein FtsY [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 85

 Score = 93.4 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 49/80 (61%)

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            VL  LD T GQNA+ Q + FH   G TGL +TK+DGTA+GG ++ I     IPV  +G+
Sbjct: 1   EVLLTLDGTIGQNAVAQAKQFHEAIGVTGLALTKLDGTAKGGVVLAIAEELAIPVRLIGI 60

Query: 292 GEGINDLEPFVAKDFSAVIT 311
           GE   DL+ F A+ F+  + 
Sbjct: 61  GEQEEDLQDFRAQAFAEALL 80


>gi|262303811|gb|ACY44498.1| signal recognition particle [Ischnura verticalis]
 gi|262303819|gb|ACY44502.1| signal recognition particle [Plathemis lydia]
          Length = 101

 Score = 93.0 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 37/66 (56%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F + 
Sbjct: 1   RAFKEKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|289670569|ref|ZP_06491644.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 486

 Score = 93.0 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 66/186 (35%), Gaps = 15/186 (8%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +  A  +     L+    L+  +L         D   R  VI +VG  G GKTT I KL+
Sbjct: 314 RDVALQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLA 373

Query: 133 KKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++     A   V L   DT R    +QL  +  +       ++                +
Sbjct: 374 QRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLE------LLER 427

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
            +   +++IDTAG    +  L A +  +             + L VL A    + L +V 
Sbjct: 428 LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-------QQVTSLLVLPANAHFSDLDEVV 480

Query: 251 MFHAVA 256
              A A
Sbjct: 481 RRFAHA 486


>gi|262303787|gb|ACY44486.1| signal recognition particle [Derocheilocaris typicus]
          Length = 101

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 37/68 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  + F + 
Sbjct: 1   RAFKDKVDVGSVIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVRPFVSK 60

Query: 310 ITGCLDYG 317
           + G  D G
Sbjct: 61  LLGMGDIG 68


>gi|331006364|ref|ZP_08329674.1| Flagellar biosynthesis protein FlhF [gamma proteobacterium
           IMCC1989]
 gi|330419824|gb|EGG94180.1| Flagellar biosynthesis protein FlhF [gamma proteobacterium
           IMCC1989]
          Length = 205

 Score = 92.6 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 71/185 (38%), Gaps = 16/185 (8%)

Query: 128 IGKLSKKMSDAGLKV--MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           I KL+ +          +L   D  R AA +QL   A   +      +            
Sbjct: 12  IAKLAARYVMENGPEGVVLVTTDIQRIAAHNQLTSLAKVLNVRVEIIDELQYLPQYLE-- 69

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
               + +   +++IDT G  H + +L       ++ L++ D         V+ A      
Sbjct: 70  ----KLQDYPLVLIDTPGMGHADPLL----KPHLQALEQCDAVQNV---LVVSANNQYQM 118

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAK 304
           ++     + +A     +MTK+D  A     + +++ + +P+ ++  G+ +  D++   + 
Sbjct: 119 MKASLHSYRLANLDYCVMTKLDECATLSDAMGMLIEYTLPLAYITDGQSVPEDIDILKSS 178

Query: 305 DFSAV 309
           +F A 
Sbjct: 179 EFIAR 183


>gi|160896047|ref|YP_001561629.1| GTP-binding signal recognition particle [Delftia acidovorans SPH-1]
 gi|160361631|gb|ABX33244.1| GTP-binding signal recognition particle SRP54 G- domain [Delftia
           acidovorans SPH-1]
          Length = 548

 Score = 92.6 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 108/298 (36%), Gaps = 27/298 (9%)

Query: 17  LTKGFASTSLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           L     S    ++E    +  +   R  + +   L   LIR+     +A+ +VE +    
Sbjct: 238 LRDELQSVRDLIEERFNTLTWLGQTR-QNPIHANLTHKLIRAGYSPVLARALVEHM---- 292

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             +D+S    +  + +++ + L   +            V  +VG  GVGKTT   KL+  
Sbjct: 293 -PQDLSAGDAVRWLMQVLERNLRTDADQAPLYEQGG--VFALVGSTGVGKTTTTAKLAAL 349

Query: 135 MS--DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            +       V L   DT+R  A DQL+ +          +   +    L           
Sbjct: 350 CAAKYGAASVGLITLDTYRVGAHDQLRSYGRMLGVVAHLAHDRAALQDLL------GLLA 403

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
              +++IDT G    +             +  L        L  ++A    +AL  V   
Sbjct: 404 NKQLVLIDTTGVAPRDPR--------KDEILDLLDLPGIQKLLAVNAAGQGDALDDVMQA 455

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAV 309
               G++  I+TK+D   + G  +  ++ H++ +  +  G+ +  D E   A+   + 
Sbjct: 456 FKARGSSQAILTKVDEAVKLGPSVDTLIRHQMQLRGVTNGQRVPEDWERADAQQLVSA 513


>gi|83309596|ref|YP_419860.1| flagellar GTP-binding protein [Magnetospirillum magneticum AMB-1]
 gi|82944437|dbj|BAE49301.1| Flagellar GTP-binding protein [Magnetospirillum magneticum AMB-1]
          Length = 333

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 93/267 (34%), Gaps = 28/267 (10%)

Query: 16  KLTKGFASTSLKLK--EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           ++T    S    L     + +      + + VR+ L D       GV    K+VE L+  
Sbjct: 41  RITAALESVDADLAVASMLEEATGGSEVSEAVRKALVDH------GVP--SKLVERLVNA 92

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            +   +S   +           L       +      P   ++VG NG GK+    KL+ 
Sbjct: 93  AHTSGLSQPPL------ACAAALEAGFTFAHLPEHGAPRPFMLVGPNGSGKSIAAAKLAA 146

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +      +V +   D  R+ A++QL  +      D V +      A +      ++    
Sbjct: 147 RSVLKQRQVGVITCDNIRAGAVEQLAAFTSILEIDLVRARGPESLARVV-----ESVNGA 201

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+++ID+ G        M  +  +I         A    + V+ A        ++    
Sbjct: 202 FDLVVIDSPGLNPFKQSDMDYLQALIEA-------ADVEPVLVMAAGGDPEEAAEIGEAF 254

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVV 280
           A  G T L  +++D T R G ++    
Sbjct: 255 AAIGATRLFASRLDTTRRLGSILAAAE 281


>gi|298528404|ref|ZP_07015808.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512056|gb|EFI35958.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 367

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 17/186 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
            +  ++G +GVGKTT + +L+ +  +   G+K+ L   DT  +     LK +AD +   F
Sbjct: 165 TIHCLMGPSGVGKTTTVLRLALESRNIKPGMKICLVNNDTQHAGGRLFLKHYADLSGFSF 224

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +  +   D  +      KQA+  K D++ +DT G   ++++  +   K ++ ++R     
Sbjct: 225 MEIKSAQDLKS-----LKQARE-KFDLVFMDTPGLGPHDNVQDSLWMKHMKNIQR----- 273

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                 VL        L      ++      LI TK+D     G L+       +P  +L
Sbjct: 274 ----HLVLSPVYAHEQLDNYLQKYSRDDLNSLIWTKLDEACSYGTLVNASWKSALPASYL 329

Query: 290 GVGEGI 295
           G G+G+
Sbjct: 330 GFGKGL 335


>gi|262303771|gb|ACY44478.1| signal recognition particle [Semibalanus balanoides]
          Length = 101

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F + 
Sbjct: 1   RAFKEKVDVGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFRTKPFISK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|289571108|ref|ZP_06451335.1| cell division protein ftsY [Mycobacterium tuberculosis T17]
 gi|289544862|gb|EFD48510.1| cell division protein ftsY [Mycobacterium tuberculosis T17]
          Length = 263

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 3/134 (2%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
                + +L    A +   L  G+  +I    LD+   +++ED L+ +D+G A    +V 
Sbjct: 118 PPEGRLERLRGRLARSQNALGRGLLGLIGGGDLDEDSWQDVEDTLLVADLGPAATASVVS 177

Query: 69  ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGKT 125
           +L ++  + +V  +     V  +++   L P           +  P V+LVVGVNG GKT
Sbjct: 178 QLRSRLASGNVRTEADARAVLRDVLINELQPGMDRSIRALPHAGHPSVLLVVGVNGTGKT 237

Query: 126 TVIGKLSKKMSDAG 139
           T +GKL++ +   G
Sbjct: 238 TTVGKLARVLVAGG 251


>gi|262303767|gb|ACY44476.1| signal recognition particle [Argulus sp. Arg2]
          Length = 101

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVGSVIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|215447185|ref|ZP_03433937.1| cell division protein ftsY [Mycobacterium tuberculosis T85]
          Length = 254

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
                + +L    A +   L  G+  +I    LD+   +++ED L+ +D+G A    +V 
Sbjct: 118 PPEGRLERLRGRLARSQNALGRGLLGLIGGGDLDEDSWQDVEDTLLVADLGPAATASVVS 177

Query: 69  ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGKT 125
           +L ++  + +V  +     V  +++   L P           +  P V+LVVGVNG GKT
Sbjct: 178 QLRSRLASGNVRTEADARAVLRDVLINELQPGMDRSIRALPHAGHPSVLLVVGVNGTGKT 237

Query: 126 TVIGKLSKKMSDAGLK 141
           T +GKL++ +   G +
Sbjct: 238 TTVGKLARVLVADGRR 253


>gi|289759043|ref|ZP_06518421.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289714607|gb|EFD78619.1| predicted protein [Mycobacterium tuberculosis T85]
          Length = 250

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
                + +L    A +   L  G+  +I    LD+   +++ED L+ +D+G A    +V 
Sbjct: 114 PPEGRLERLRGRLARSQNALGRGLLGLIGGGDLDEDSWQDVEDTLLVADLGPAATASVVS 173

Query: 69  ELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPF--NWDFSHRPHVILVVGVNGVGKT 125
           +L ++  + +V  +     V  +++   L P           +  P V+LVVGVNG GKT
Sbjct: 174 QLRSRLASGNVRTEADARAVLRDVLINELQPGMDRSIRALPHAGHPSVLLVVGVNGTGKT 233

Query: 126 TVIGKLSKKMSDAGLK 141
           T +GKL++ +   G +
Sbjct: 234 TTVGKLARVLVADGRR 249


>gi|157813214|gb|ABV81352.1| putative signal recognition particle protein [Prodoxus
           quinquepunctellus]
          Length = 101

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F   
Sbjct: 1   RAFKEKVDIGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKTKPFINK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|157813208|gb|ABV81349.1| putative signal recognition particle protein [Tanystylum
           orbiculare]
          Length = 101

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F + +
Sbjct: 2   AFKDKVDVGSVIVTKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDLEPFKVKPFVSKL 61

Query: 311 TGCLD 315
            G  D
Sbjct: 62  LGMGD 66


>gi|157813212|gb|ABV81351.1| putative signal recognition particle protein [Cydia pomonella]
          Length = 101

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+DLEPF  K F   
Sbjct: 1   RAFKEKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFINK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|288960023|ref|YP_003450363.1| flagellar biosynthesis protein [Azospirillum sp. B510]
 gi|288912331|dbj|BAI73819.1| flagellar biosynthesis protein [Azospirillum sp. B510]
          Length = 429

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 21/183 (11%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           D       + +VG  G GKT V  KL+ +       V +   DT R+  +DQL  +    
Sbjct: 128 DGRSPVKPLALVGPPGSGKTLVAAKLAARAVFRKCSVGVITTDTVRAGGVDQLAAFTRLM 187

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                  E          +A   A       D++++DTAGR   ++  M  +  M+   +
Sbjct: 188 KLKLATVEDP--------DALAGAFEVHRRTDLVLVDTAGRNPFDADDMQDLRTMLAAGE 239

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEM--FHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
                     + VL A  G +AL   +M       G   +++T++D   R G ++ I   
Sbjct: 240 -------VEPVLVLPA--GLDALEAADMALAFKAVGVRRMLVTRLDMARRLGSVLAIAAR 290

Query: 282 HKI 284
            ++
Sbjct: 291 ARL 293


>gi|262303799|gb|ACY44492.1| signal recognition particle [Euperipatoides rowelli]
 gi|262303839|gb|ACY44512.1| signal recognition particle [Peripatus sp. 'Pep']
          Length = 101

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V     PV F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVASVIVTKLDGHAKGGGALSAVAATGSPVIFIGTGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|91984111|gb|ABE68919.1| FlhF [Azospirillum brasilense]
          Length = 353

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 14/207 (6%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           D       +++VG  G GKT ++ KL+ +       V +   DT R+  ++QL  +    
Sbjct: 130 DRRGGNKPLILVGPPGSGKTLIVAKLAAQAVFRKRSVGVITTDTVRAGGMEQLAAFTRLM 189

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                  E           A     ++  DV+++DTAGR   N   MA +  ++      
Sbjct: 190 KIKLATVEDPDAL------AGAFEVSRGADVVLVDTAGRNPYNREDMADLKALLSAGVA- 242

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
                   + VL A         +       G   +++T++D   R G L+      ++ 
Sbjct: 243 ------EPILVLPAGLDAMEAADIAQSFKALGVRRMLITRLDMARRLGSLLGTAHRSRMA 296

Query: 286 VYFLGVGEGI-NDLEPFVAKDFSAVIT 311
                V   +   L P     F+ ++ 
Sbjct: 297 FCNASVSSKVAEGLTPLNPVAFARLMM 323


>gi|262303861|gb|ACY44523.1| signal recognition particle [Tomocerus sp. 'Tom2']
          Length = 101

 Score = 90.3 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 37/66 (56%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLEPF  K F + 
Sbjct: 1   KAFKEKVNVGAVIITKLDGHAKGGGALSAVAATSSPIIFIGTGEHIDDLEPFKTKPFISK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|157813202|gb|ABV81346.1| putative signal recognition particle protein [Speleonectes
           tulumensis]
          Length = 101

 Score = 90.3 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F        +I+TK+DG A+GGG +  V     P+ F+G GE I+D EPF  K F + 
Sbjct: 1   QAFKDKVDVGSVIITKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDFEPFKTKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303809|gb|ACY44497.1| signal recognition particle [Idiogaryops pumilis]
          Length = 101

 Score = 90.3 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVGAVIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303773|gb|ACY44479.1| signal recognition particle [Ctenolepisma lineata]
          Length = 101

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKTKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303837|gb|ACY44511.1| signal recognition particle [Periplaneta americana]
          Length = 101

 Score = 89.9 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVGSVIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKTKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303847|gb|ACY44516.1| signal recognition particle [Polyxenus fasciculatus]
          Length = 100

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKDKVDVGAVIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|46201260|ref|ZP_00055403.2| COG1419: Flagellar GTP-binding protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 323

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 92/267 (34%), Gaps = 28/267 (10%)

Query: 16  KLTKGFASTSLKLK--EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           ++T    S    L     + +      + + VR+ L D       G     K+VE L+  
Sbjct: 31  RITAALESVDADLAVASMLEEATGGSEVSEAVRKALVDH------GTPA--KLVERLVNA 82

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
                ++   +           L       +      P   ++VG NG GK+    KL+ 
Sbjct: 83  AQTSGLTQPPL------ACAAALEAGFTFAHLPEHGAPRPFMLVGPNGSGKSIAAAKLAA 136

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +      +V +   D  R+ A++QL  +      D V +      A +      ++ +  
Sbjct: 137 RSVLKQRQVGVITCDNIRAGAVEQLAAFTSILEIDLVRARGPESLARVV-----ESMSGA 191

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D+++ID+ G        M  +  +I         A    + V+ A        ++    
Sbjct: 192 FDLVVIDSPGLNPFKQSDMDYLQALIEA-------ADVEPVLVMAAGGDPEEAAEIGEAF 244

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVV 280
           +  G T L  +++D T R G ++    
Sbjct: 245 SAIGATRLFASRLDTTRRLGSILAAAE 271


>gi|262303779|gb|ACY44482.1| signal recognition particle [Cryptocellus centralis]
 gi|262303793|gb|ACY44489.1| signal recognition particle [Eremocosta gigasella]
          Length = 101

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVGAVIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|207108177|ref|ZP_03242339.1| signal recognition particle protein (ffh) [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 120

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 6/117 (5%)

Query: 26  LKLKEGITDIISSRRLDDG------VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
             L +G  + ++  R  D         +EL+  L+++D+   VA+++++++ ++     +
Sbjct: 3   QALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGI 62

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
             Q+ L  + + + ++L              P V+L+ G+ G GKTT   KL+  + 
Sbjct: 63  GKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLK 119


>gi|262303791|gb|ACY44488.1| signal recognition particle [Eumesocampa frigilis]
          Length = 101

 Score = 89.5 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 37/66 (56%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F        +I+TK+DG ARGGG +  V   + PV F+G GE I+D EPF  K F + 
Sbjct: 1   KAFKDKVNIGSVIITKLDGHARGGGALSAVAATQSPVTFIGTGEHIDDFEPFKTKPFISK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|157813200|gb|ABV81345.1| putative signal recognition particle protein [Podura aquatica]
          Length = 101

 Score = 89.5 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 38/66 (57%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F        +I+TK+DG A+GGG +  V     PV F+G+GE I+D+EPF  K F + 
Sbjct: 1   KAFKDKVNVGSVIITKLDGHAKGGGALSAVAATNSPVIFIGIGEHIDDIEPFKTKPFISK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303759|gb|ACY44472.1| signal recognition particle [Achelia echinata]
          Length = 101

 Score = 89.5 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  K F + +
Sbjct: 2   AFKDKVDVGAVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKVKPFVSKL 61

Query: 311 TGCLD 315
            G  D
Sbjct: 62  LGMGD 66


>gi|262303829|gb|ACY44507.1| signal recognition particle [Machiloides banksi]
 gi|262303849|gb|ACY44517.1| signal recognition particle [Pedetontus saltator]
          Length = 101

 Score = 89.5 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVNVGSVIITKLDGHAKGGGALSAVAATESPIIFIGTGEHIDDFEPFKTKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|290559167|gb|EFD92526.1| signal recognition particle GTPase SRP54 [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 107

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 41/82 (50%)

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
           P   + V D+ TG + ++Q E+F    G    I++K D   +GG ++ I    K P+ FL
Sbjct: 24  PDLTIFVGDSLTGNDVVKQAEVFDKEIGIDVNILSKTDVDKKGGAVLSISYVTKKPILFL 83

Query: 290 GVGEGINDLEPFVAKDFSAVIT 311
           G G+   DL PF  +  +  I 
Sbjct: 84  GTGQSYTDLIPFNKEKTADFIL 105


>gi|157813190|gb|ABV81340.1| putative signal recognition particle protein [Limulus polyphemus]
 gi|262303777|gb|ACY44481.1| signal recognition particle [Carcinoscorpius rotundicauda]
          Length = 101

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V     P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVGAVIVTKLDGHAKGGGALSAVAATHSPIIFIGTGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303835|gb|ACY44510.1| signal recognition particle [Orchesella imitari]
          Length = 101

 Score = 89.1 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 37/66 (56%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + PV F+G GE I+DLEPF  K F + 
Sbjct: 1   RAFKEKVDVGSVIITKLDGHAKGGGALSAVAATESPVIFIGTGEHIDDLEPFKTKPFISK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|157813186|gb|ABV81338.1| putative signal recognition particle protein [Forficula
           auricularia]
 gi|262303833|gb|ACY44509.1| signal recognition particle [Nicoletia meinerti]
          Length = 101

 Score = 89.1 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVGSVIITKLDGHAKGGGALSAVAATESPIIFIGTGEHIDDFEPFKTKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|157813188|gb|ABV81339.1| putative signal recognition particle protein [Lithobius forticatus]
          Length = 101

 Score = 89.1 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVASVIVTKLDGHAKGGGALSAVAATRSPIIFIGTGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LMGMGD 66


>gi|38047671|gb|AAR09738.1| similar to Drosophila melanogaster Gtp-bp [Drosophila yakuba]
          Length = 126

 Score = 89.1 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 17/129 (13%)

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           VDV+++DTAGR+ +N  LM  + K+I+V      + P  VL V +A  G  A+ Q+  F+
Sbjct: 3   VDVVLVDTAGRMQDNEPLMRSLSKLIKV------NNPDLVLFVGEALVGNEAVDQLVKFN 56

Query: 254 AVAG----------TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFV 302
                           G+++TK D    + G  I +      P+ F+G G+   DL+   
Sbjct: 57  QSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLKAIN 116

Query: 303 AKDFSAVIT 311
                  + 
Sbjct: 117 VNAVVNSLM 125


>gi|262303765|gb|ACY44475.1| signal recognition particle [Amblyomma sp. 'Amb2']
          Length = 101

 Score = 89.1 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V     P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVGAVIVTKLDGHAKGGGALSAVAATHSPIIFIGTGEHIDDFEPFKVKPFISK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303781|gb|ACY44483.1| signal recognition particle [Craterostigmus tasmanianus]
          Length = 101

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVGAVIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LMGMGD 66


>gi|262303761|gb|ACY44473.1| signal recognition particle [Ammothea hilgendorfi]
          Length = 101

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  K F + +
Sbjct: 2   AFKDKVDVGAVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKVKPFVSKL 61

Query: 311 TGCLD 315
            G  D
Sbjct: 62  LGMGD 66


>gi|157813194|gb|ABV81342.1| putative signal recognition particle protein [Mastigoproctus
           giganteus]
          Length = 101

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF    F + 
Sbjct: 1   RAFKDKVDVGSVIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFKVNPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|88861503|ref|ZP_01136122.1| Cell division transporter substrate-binding protein FtsY
           [Pseudoalteromonas tunicata D2]
 gi|88816498|gb|EAR26334.1| Cell division transporter substrate-binding protein FtsY
           [Pseudoalteromonas tunicata D2]
          Length = 388

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 42/86 (48%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           + + +  S+  +L K    T   +  G  +I S +++DD + EELE  L+ +D+GV    
Sbjct: 301 EESPKKDSFFSRLKKSLIKTKQSIGSGFINIFSGKKIDDELFEELETQLLTADLGVDTTL 360

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSE 90
           K++  L      K +     LYD+ +
Sbjct: 361 KLIARLTEAADRKQLKDGDALYDLLK 386


>gi|262303821|gb|ACY44503.1| signal recognition particle [Leiobunum verrucosum]
          Length = 101

 Score = 88.8 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V     P+ F+G GE ++D EPF  K F + 
Sbjct: 1   RAFKEKVDVASVIVTKLDGHAKGGGALSAVAATCSPIIFIGTGEHVDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303823|gb|ACY44504.1| signal recognition particle [Loxothylacus texanus]
          Length = 101

 Score = 88.8 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V     P+ F+G GE I+DLE F  K F + 
Sbjct: 1   RAFKERVDVGSVIITKLDGHAKGGGALSAVAATSSPIIFIGTGEHIDDLETFRVKPFISK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303797|gb|ACY44491.1| signal recognition particle [Endeis laevis]
          Length = 101

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  K F + +
Sbjct: 2   AFKDKVDVGAVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKVKPFVSKL 61

Query: 311 TGCLD 315
            G  D
Sbjct: 62  LGMGD 66


>gi|262303757|gb|ACY44471.1| signal recognition particle [Acheta domesticus]
          Length = 101

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVGSVIVTKLDGHAKGGGALSAVAATESPIIFIGTGEHIDDFEPFKTKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303805|gb|ACY44495.1| signal recognition particle [Hadrurus arizonensis]
 gi|262303807|gb|ACY44496.1| signal recognition particle [Heterometrus spinifer]
          Length = 101

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+D  A+GGG +  V   + P+ F+G GE ++D EPF  K F + 
Sbjct: 1   RAFKEKVDVGAVIVTKLDSHAKGGGALSAVAATQSPIIFIGTGEHVDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|255564956|ref|XP_002523471.1| signal recognition particle 54 kD protein, putative [Ricinus
           communis]
 gi|223537299|gb|EEF38930.1| signal recognition particle 54 kD protein, putative [Ricinus
           communis]
          Length = 194

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%)

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           R   +     + + + +  Q A  Q + F        +++TKMDG A+GG  +  V    
Sbjct: 26  RKIYNMRQICILISEKSISQAAFDQAQAFKQRVAVGAMVITKMDGHAKGGVALSAVAATN 85

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
             V F+G GE +++ + F A+ F ++++G  D 
Sbjct: 86  SLVIFIGTGEHMSNFQQFDAQSFVSLLSGMGDL 118


>gi|262303775|gb|ACY44480.1| signal recognition particle [Nymphon unguiculatum-charcoti complex
           sp. SEM-1997]
          Length = 101

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TK+DG A+GGG +  V   K P+ F+G GE I+D EPF  K F + +
Sbjct: 2   AFKDKVDVGAVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKVKPFISKL 61

Query: 311 TGCLD 315
            G  D
Sbjct: 62  LGMGD 66


>gi|262303763|gb|ACY44474.1| signal recognition particle [Abacion magnum]
          Length = 98

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVGAVIVTKLDGHAKGGGALSAVAATQSPIIFIGSGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303857|gb|ACY44521.1| signal recognition particle [Scolopendra polymorpha]
          Length = 101

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V     P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVASVIVTKLDGHAKGGGALSAVAATASPIIFIGTGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LMGMGD 66


>gi|262303769|gb|ACY44477.1| signal recognition particle [Artemia salina]
          Length = 101

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 38/68 (55%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F        +I+TK+DG A+GGG +  V + K P+ F+G GE I+D EPF A+ F   
Sbjct: 1   KAFKQKVDVGSVIVTKLDGHAKGGGALSAVASTKSPIVFIGTGEHIDDFEPFKAEPFIRK 60

Query: 310 ITGCLDYG 317
           + G  D  
Sbjct: 61  LLGLGDIA 68


>gi|262303825|gb|ACY44505.1| signal recognition particle [Lynceus sp. 'Lyn']
          Length = 101

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEPFRTKPFISK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGLGD 66


>gi|262303841|gb|ACY44513.1| signal recognition particle [Polyzonium germanicum]
          Length = 101

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVGAVIITKLDGHAKGGGALSAVAATESPIIFIGSGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|221109366|ref|XP_002169179.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 159

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 29/161 (18%)

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-------------SADFVCSEIGSD 177
           +   + +   +VM+AA DTFRS A++QL+    R                       G D
Sbjct: 1   ICFWLLENNHRVMIAACDTFRSGAVEQLRTHTCRLKALHPKASPSAPEQVFLYDKGYGKD 60

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           AAA++ EA   A+  K DV+++DTAGR+ +N  LM  + K+I++      + P+ VL V 
Sbjct: 61  AAAVSMEAINLAKDLKCDVVLVDTAGRMQDNEPLMRSLAKLIKI------NEPNLVLFVG 114

Query: 238 DATTGQNALRQVEMFHAVAG----------TTGLIMTKMDG 268
           +A  G + + Q+  F+                G+++TK D 
Sbjct: 115 EALVGNDGVDQLRKFNQALADHSDVNNPHLIDGIVLTKFDT 155


>gi|262303755|gb|ACY44470.1| signal recognition particle [Acanthocyclops vernalis]
          Length = 101

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I++K+DG A+GGG +  V   + PV F+G GE I+D EPF  K F   +
Sbjct: 2   AFKEKVDVGSVIISKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDFEPFKTKPFVQKL 61

Query: 311 TGCLD 315
            G  D
Sbjct: 62  LGMGD 66


>gi|262303855|gb|ACY44520.1| signal recognition particle [Scutigerella sp. 'Scu3']
          Length = 101

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE  +D EPF  K F + 
Sbjct: 1   RAFKDKVDVGAVIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHTDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303843|gb|ACY44514.1| signal recognition particle [Phrynus marginemaculatus]
          Length = 101

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+D  A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKDKVDVGAVIVTKLDSHAKGGGALSAVAATQSPITFIGTGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|157813196|gb|ABV81343.1| putative signal recognition particle protein [Narceus americanus]
          Length = 101

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   KAFKEKVDVGAVIITKLDGHAKGGGALSAVAATESPIIFIGSGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|289675157|ref|ZP_06496047.1| Signal recognition particle protein [Pseudomonas syringae pv.
           syringae FF5]
          Length = 112

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 47/112 (41%), Gaps = 10/112 (8%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNNVKERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +VS      Q  +  V   +  ++   ++    + +  P VIL+ G+ G G
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVILMAGLQGAG 112


>gi|213422086|ref|ZP_03355152.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 97

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 6/103 (5%)

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             DF  S++G     +   A K+A+ K  DVL++DTAGRLH +  +M  I ++   +K  
Sbjct: 1   GVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIK-- 58

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
               P   L V+DA TGQ+A    + F+     TG+++TK+DG
Sbjct: 59  ----PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDG 97


>gi|262303803|gb|ACY44494.1| signal recognition particle [Hanseniella sp. 'Han2']
          Length = 101

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE  +D EPF  K F + 
Sbjct: 1   RAFKDKVDVGAVIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHTDDFEPFKVKPFISK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303813|gb|ACY44499.1| signal recognition particle [Metajapyx subterraneus]
          Length = 101

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + PV F+G GE I+DLE F  K F + 
Sbjct: 1   RAFKDKVDIGSVIVTKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDLEAFKTKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303863|gb|ACY44524.1| signal recognition particle [Streptocephalus seali]
          Length = 101

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F        +I+TK+DG A+GGG +  V +   P+ F+G GE I+D EPF ++ F   
Sbjct: 1   KAFKEKVDIGSVIVTKLDGHAKGGGALSAVASTNSPIIFIGTGEHIDDFEPFKSQPFIKK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGLGD 66


>gi|157813204|gb|ABV81347.1| putative signal recognition particle protein [Thulinius stephaniae]
          Length = 101

 Score = 86.8 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 37/68 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F +      +I+TK+DG ARGGG +  V   + PV F+G GE I++ E F AK F + 
Sbjct: 1   RAFKSKVNVASVIITKLDGHARGGGALSAVAATQSPVIFIGTGEHIDEFELFKAKSFVSK 60

Query: 310 ITGCLDYG 317
           + G  D  
Sbjct: 61  LLGMGDMD 68


>gi|157813192|gb|ABV81341.1| putative signal recognition particle protein [Mesocyclops edax]
          Length = 101

 Score = 86.8 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I++K+DG A+GGG +  V   + PV F+G GE I+D EPF  K F   +
Sbjct: 2   AFKEKVDVGSVIISKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDFEPFKTKPFIQKL 61

Query: 311 TGCLD 315
            G  D
Sbjct: 62  LGMGD 66


>gi|262303801|gb|ACY44493.1| signal recognition particle [Eurypauropus spinosus]
          Length = 101

 Score = 86.4 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D E F  K F + 
Sbjct: 1   RAFKDKVDVGAVIVTKLDGHAKGGGALSAVAATRSPIIFIGTGEHIDDFEQFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|157813206|gb|ABV81348.1| putative signal recognition particle protein [Triops longicaudatus]
          Length = 101

 Score = 86.4 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F        +I+TK+DG A+GGG +  V   + PV F+G GE I D EPF  K F + 
Sbjct: 1   KAFKEKVDVGSVIITKLDGHAKGGGALSAVAATRSPVIFIGTGEHIEDFEPFKTKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGLGD 66


>gi|262303853|gb|ACY44519.1| signal recognition particle [Scutigera coleoptrata]
          Length = 101

 Score = 86.4 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVGAVIITKLDGHAKGGGALSAVAATESPIIFIGTGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LMGLGD 66


>gi|262303783|gb|ACY44484.1| signal recognition particle [Dinothrombium pandorae]
          Length = 101

 Score = 86.4 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F +      +++TK+DG A+GGG +  V     P+ F+G GE I+D E F  K F + 
Sbjct: 1   RAFKSKVDVGAVVVTKLDGHAKGGGALSAVAATNSPIIFIGTGEHIDDFEQFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303859|gb|ACY44522.1| signal recognition particle [Stenochrus portoricensis]
          Length = 101

 Score = 86.4 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I+D E F  K F + 
Sbjct: 1   RAFKDKVDVGAVIVTKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDFEQFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303795|gb|ACY44490.1| signal recognition particle [Ephemerella inconstans]
          Length = 101

 Score = 86.4 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + PV ++G GE I+DLE F  K F + 
Sbjct: 1   RAFKEKVSVGAVIITKLDGHAKGGGALSAVAATQSPVIYIGTGEHIDDLESFKTKPFISK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303851|gb|ACY44518.1| signal recognition particle [Prokoenenia wheeleri]
          Length = 101

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 34/66 (51%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V     P+ F+G GE I+D E F  K F + 
Sbjct: 1   RAFKEKVDVGAVIVTKLDGHAKGGGALSAVAATHSPIIFIGTGEHIDDFELFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303827|gb|ACY44506.1| signal recognition particle [Hexagenia limbata]
          Length = 101

 Score = 86.1 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
            F        +I+TK+DG A+GGG +  V   + PV F+G GE I+DLE F  K F + +
Sbjct: 2   AFKEKVSVGAVIITKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDLESFKTKPFISKL 61

Query: 311 TGCLD 315
            G  D
Sbjct: 62  LGMGD 66


>gi|157813198|gb|ABV81344.1| putative signal recognition particle protein [Cypridopsis vidua]
          Length = 101

 Score = 86.1 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 34/68 (50%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V     P+ F+G GE I+D E F  + F + 
Sbjct: 1   RAFKEKVDVGAVIITKLDGHAKGGGALSAVAATMSPIIFIGTGEHIDDFEVFKVRPFVSK 60

Query: 310 ITGCLDYG 317
           + G  D  
Sbjct: 61  LLGMGDID 68


>gi|83591872|ref|YP_425624.1| GTP-binding signal recognition particle [Rhodospirillum rubrum ATCC
           11170]
 gi|83574786|gb|ABC21337.1| GTP-binding signal recognition particle SRP54, G-domain
           [Rhodospirillum rubrum ATCC 11170]
          Length = 368

 Score = 86.1 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 12/196 (6%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
            D        L  + +      +  P  IL+VG  G GKT  + KL+ +   +G  V + 
Sbjct: 125 RDAISACASALDQVFRFAPMPQTAAPRPILLVGPPGTGKTIAVAKLAARARLSGRAVGVI 184

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             D+ R+ A +QL  +      D   +      A L     +Q       V+ ID+ G  
Sbjct: 185 TADSVRAGAQEQLAAFTRILEIDLKKARGPDGLATLVPNMQQQ-----FGVIFIDSPGLN 239

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             +   M  +  +I  +             VL+A T      ++    A  G + ++ T+
Sbjct: 240 PFSQDDMDYLRALISAVPMDAA-------LVLNAGTDPMEAMEIAEAFAEVGASRILATR 292

Query: 266 MDGTARGGGLIPIVVT 281
           +D   R GG++     
Sbjct: 293 LDMARRLGGILAAAEA 308


>gi|262303831|gb|ACY44508.1| signal recognition particle [Milnesium tardigradum]
          Length = 101

 Score = 85.7 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F +      +I+TK+DG ARGGG +  V   + P+ F+G GE I+D E F  K F + 
Sbjct: 1   RAFKSKVNVASVIITKLDGHARGGGALSAVAATQSPIIFIGTGEYIDDFESFKVKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|262303817|gb|ACY44501.1| signal recognition particle [Limnadia lenticularis]
          Length = 101

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + PV F+G GE I+DLE F  K F + 
Sbjct: 1   RAFKEKVDVGSVIITKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDLESFKTKPFVSK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGLGD 66


>gi|262303815|gb|ACY44500.1| signal recognition particle [Libinia emarginata]
          Length = 101

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 35/66 (53%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + P+ F+G GE I++ E F  K F + 
Sbjct: 1   RAFKEKVDVGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDNFEEFKTKPFISK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|238593005|ref|XP_002393074.1| hypothetical protein MPER_07266 [Moniliophthora perniciosa FA553]
 gi|215460003|gb|EEB94004.1| hypothetical protein MPER_07266 [Moniliophthora perniciosa FA553]
          Length = 324

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 83/197 (42%), Gaps = 42/197 (21%)

Query: 22  ASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           + +   L      +  S+ L +     V E ++  L++ ++   +A K+ E +      K
Sbjct: 153 SGSLGALGSLFARLTGSKVLTEQDLKPVLEGMKQHLMKKNVAKEIADKVCEGVGKSLVGK 212

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
            V     +                         P+ I  VGVNGVGK+T + K+   +  
Sbjct: 213 KVEESTRV-------------------------PYSITFVGVNGVGKSTNLSKVCFWLIQ 247

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSDAAALAYE 184
            GL+V++AA DTFRS A++QL++     S              +      G DAAA+A E
Sbjct: 248 NGLRVLIAACDTFRSGAVEQLRVHVRNLSMLGVNGATDSKGRVELFERGYGKDAAAIARE 307

Query: 185 AFKQAQAKKVDVLIIDT 201
           A   A +   DV++IDT
Sbjct: 308 AIAYAGSNDFDVVLIDT 324


>gi|262303785|gb|ACY44485.1| signal recognition particle [Daphnia magna]
          Length = 101

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 36/66 (54%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V   + PV F+G GE I+DLE F  K F + 
Sbjct: 1   RAFKEKVDVGSVIITKLDGHAKGGGALSAVAATQSPVIFIGTGEHIDDLESFKTKPFISK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGLGD 66


>gi|71913237|gb|AAZ53359.1| signal recognition particle-docking protein [Flavobacterium
           psychrophilum]
          Length = 74

 Score = 84.1 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 45/70 (64%)

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDL 298
            +TGQNA  Q + F A    T L +TK+DGTA+GG +I I    +IPV ++GVGEGINDL
Sbjct: 1   GSTGQNAFEQAKQFTAATEVTSLAVTKLDGTAKGGVVIGISDQFQIPVKYIGVGEGINDL 60

Query: 299 EPFVAKDFSA 308
           + F   +F  
Sbjct: 61  QVFNKYEFVD 70


>gi|262303845|gb|ACY44515.1| signal recognition particle [Peripatoides novaezealandiae]
          Length = 101

 Score = 84.1 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 34/66 (51%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
             F        +I+TK+DG A+GGG +  V     PV F+G GE I+D EPF  K F + 
Sbjct: 1   RAFKEKVDVASVIVTKLDGLAKGGGALSAVAATGSPVIFIGTGEHIDDFEPFKVKPFVSK 60

Query: 310 ITGCLD 315
           +    D
Sbjct: 61  LLVMGD 66


>gi|262303789|gb|ACY44487.1| signal recognition particle [Eurytemora affinis]
          Length = 100

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           + F        +++TK+DG A+GGG +  V   K PV F+G GE I++LE F  K F + 
Sbjct: 1   KAFKDKVDVGSVVITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDNLEMFEEKAFISK 60

Query: 310 ITGCLD 315
           + G  D
Sbjct: 61  LLGMGD 66


>gi|330946682|gb|EGH47644.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 188

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 13/128 (10%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-- 135
           D   Q     ++ L   + +P  +P          VI +VG  G+GKTT + KL+ +   
Sbjct: 69  DEPRQAWRMLLAHLARMIAVPEVEPLEEGG-----VIAMVGPAGMGKTTTLAKLAARYVL 123

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
                 + L + D+FR  A +QLK      +      + G        +A +    K+  
Sbjct: 124 KYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVTHIDPGQSLV----QALEPLLRKR-- 177

Query: 196 VLIIDTAG 203
           V++IDTAG
Sbjct: 178 VVLIDTAG 185


>gi|83859383|ref|ZP_00952904.1| flagellar biosynthesis protein-like protein (FlhF) [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852830|gb|EAP90683.1| flagellar biosynthesis protein-like protein (FlhF) [Oceanicaulis
           alexandrii HTCC2633]
          Length = 327

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 78/213 (36%), Gaps = 31/213 (14%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +L+ G  G GK++ I KL+ +    G   +L + D+ R+ A +Q+  +AD       C  
Sbjct: 136 VLLAGPPGSGKSSAIAKLAARAVAQGHAPVLVSADS-RAGAAEQMTAYADALDLPLECVT 194

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              +  ++  E            ++ID AG       L       +  L  L   +   +
Sbjct: 195 GPRELRSVL-EGLPAGP------VLIDVAG-------LNPFDLDQLDDLAALADASDGEI 240

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI-------VVTHKIPV 286
           + VLDA              +  G   +I TK+D   R G L+               P 
Sbjct: 241 VAVLDAGMTPGDAEDAAALFSSIGAGRVIATKLDIARRLGALLAFGEAGLAYAQISASP- 299

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLDYGEE 319
            ++G G     L P  A   S ++    D GEE
Sbjct: 300 -YIGDG-----LAPATALRLSRLLL--EDPGEE 324


>gi|213857962|ref|ZP_03384933.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 199

 Score = 80.3 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 23/45 (51%)

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           RGG  + I      P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 1   RGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGD 45


>gi|268553693|ref|XP_002634833.1| Hypothetical protein CBG13942 [Caenorhabditis briggsae]
          Length = 450

 Score = 80.3 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 15/129 (11%)

Query: 32  ITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQ 82
           +  ++  ++L       + E++ D LI  ++    A+KI + +++K   K V     + Q
Sbjct: 322 LKGLVGEKKLSSEDLTPLVEKMRDNLIMKNVAAEPAEKICQSVVSKLEGKVVNNFSRTAQ 381

Query: 83  RVLYDVSELIHKMLMP------LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            V   V E + ++L P      L          RP+VI+  GVNGVGK+T + K++  ++
Sbjct: 382 EVRTAVRESLVQLLTPKHRVDILRDVIEAKKEGRPYVIVFCGVNGVGKSTNLAKITFWLT 441

Query: 137 DAGLKVMLA 145
           +   +V++A
Sbjct: 442 ENKHRVLIA 450


>gi|213586082|ref|ZP_03367908.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 93

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 24/46 (52%)

Query: 270 ARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           ARGG  + I      P+ FLGVGE  + LEPF     ++ I G  D
Sbjct: 1   ARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGD 46


>gi|268316327|ref|YP_003290046.1| Flagellar GTP-binding protein-like protein [Rhodothermus marinus
           DSM 4252]
 gi|262333861|gb|ACY47658.1| Flagellar GTP-binding protein-like protein [Rhodothermus marinus
           DSM 4252]
          Length = 412

 Score = 79.5 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 111/320 (34%), Gaps = 36/320 (11%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S   V +     + +L +       +L   +    S R L   +  EL    ++     +
Sbjct: 117 SASPVPAHLADQLERLHRRLERLERQLGGALVGA-SHRWLGHPLAGELLRQGLQ----PS 171

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              ++ + L+ + +  +   +++ + ++  +   L     P        P V+  +G  G
Sbjct: 172 TVIRLFDRLVAQGFDPEQPDEQLRWALAREMRHQLA----PSTPRPLQGPQVV--IGPAG 225

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAA------GDTF-RSAAIDQLKIWADRTSADFVCSEI 174
            GKTT++ KL++     G ++           D+    + ++  + +           E+
Sbjct: 226 AGKTTLLLKLARHAGFFGRRMTAVLVLLPEDADSQPYLSPVELYRRFGLPVQTVATPQEM 285

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
            +    +          +  D ++IDT       +     +  + ++L  + P     VL
Sbjct: 286 TAALRRV----------QGFDQILIDTPSLPLQEAPARRLLLHLRQLLTPVLP---LQVL 332

Query: 235 QVLDATTGQNALRQVEMFHAVAGT--TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
             L+AT     +     +          L++T +D   R G L   +V    PV  +  G
Sbjct: 333 FCLNATCNLEDIP--PDWIRRLPLAPDALVLTHLDEVRRVGRLYDWLVALACPVVCVSRG 390

Query: 293 EGIND-LEPFVAKDFSAVIT 311
             + D LE F    F   + 
Sbjct: 391 ARVPDSLEAFSPVAFIEHLL 410


>gi|330954980|gb|EGH55240.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae Cit 7]
          Length = 59

 Score = 79.1 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 35/53 (66%)

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           TGL +TK+DGTA+GG +  +     +P+ ++GVGEGI+DL  F A+ F   + 
Sbjct: 1   TGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEAEPFVQALF 53


>gi|322375335|ref|ZP_08049848.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           C300]
 gi|321279598|gb|EFX56638.1| signal recognition particle-docking protein FtsY [Streptococcus sp.
           C300]
          Length = 274

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 7/136 (5%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
            +++     +   K  +    T       +    ++ R +D+   EELE+LLI SD+GV 
Sbjct: 121 EEELPQVEETVQEKYDRSLKKTRTGFGARLNAFFANFRSVDEEFFEELEELLIMSDVGVQ 180

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD----FSHRPHVILVV 117
           VA  + EEL  +   ++      L  V  +I K++    K  N+D    F     V+L V
Sbjct: 181 VASNLTEELRYEAKLENAKKPDALRRV--IIEKLVELYEKDGNYDEQIHFQDGLTVMLFV 238

Query: 118 GVNGVGKTTVIGKLSK 133
           GVNGVGKTT IGKL+ 
Sbjct: 239 GVNGVGKTTSIGKLAH 254


>gi|169839025|ref|ZP_02872213.1| Signal recognition particle, subunit FFH/SRP54 [candidate division
           TM7 single-cell isolate TM7a]
          Length = 99

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             Q+ +  V++ + ++L   +          P ++++ G+ G GKTT  GKL+K +   G
Sbjct: 8   PTQQFIKIVNDELVEVLGGSNVSI-AKAEKNPTIVMLSGLQGAGKTTFSGKLAKHLKSKG 66

Query: 140 LKVMLAAGDTFRSAAIDQLKIWAD 163
            K  L   D +R AA   +K    
Sbjct: 67  EKPFLIGADVYRPAAKKAIKGIGR 90


>gi|330903823|gb|EGH34395.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 107

 Score = 78.4 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           VI +VG  G+GKTT + KL+ +         + L + D+FR  A +QLK      +    
Sbjct: 14  VIAMVGPAGMGKTTTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVT 73

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             + G        +A +    K+  V++IDTAG   ++  
Sbjct: 74  HIDPGQSLV----QALEPLLRKR--VVLIDTAGLQASDPA 107


>gi|78355428|ref|YP_386877.1| flagellar biosynthesis protein FlhF [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78217833|gb|ABB37182.1| flagellar biosynthesis protein FlhF, putative [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 362

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 15/181 (8%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           V G +GVGKT+ + +++  +     G+++ +   D+ R +    L+ +A+     +    
Sbjct: 162 VCGPSGVGKTSAVVRMALALRRQNAGVRICVLNADSQRGSGRMVLRHYAELCGMGYHEIS 221

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTA--GRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                   A  A    +    D +++DT   GR      L+   G  + VL++  P A  
Sbjct: 222 GP------ADAAALLGELDGYDKILVDTPVPGRGATLRSLLEETG--LDVLEQQVPAA-- 271

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V  V+    G   +      +      GL+ TK+D     G LI +     +PV  L  
Sbjct: 272 -VQLVMSPLYGDAQISFFLRQYECGLPCGLVWTKLDEACNFGALINVPAASGLPVTALSF 330

Query: 292 G 292
           G
Sbjct: 331 G 331


>gi|254294571|ref|YP_003060594.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Hirschia baltica ATCC 49814]
 gi|254043102|gb|ACT59897.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Hirschia baltica ATCC 49814]
          Length = 330

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 72/199 (36%), Gaps = 15/199 (7%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL+VG  G GKT+   KL+    ++ L +   + D   +    +L  +  R       S 
Sbjct: 128 ILLVGAPGCGKTSTAAKLAAVTRNSPLGLKATSADFDAAGGHARLSAYVGRPDVGLFKSP 187

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                   A +    A+      L+ID       +S     I ++  +L  +D       
Sbjct: 188 E-------ALQKHLAARTPSERKLVIDGPAFNPVDSN---EIARLRNLLYNVD----VEP 233

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
           + V+ A      L       A  G    I+TK+D   R GG    + + ++ +  L +  
Sbjct: 234 ILVMSAEGHPEDLEDNARAFASVGVRRAILTKLDVVRRRGGAFAAISSSRLSIAQLSLTH 293

Query: 294 GI-NDLEPFVAKDFSAVIT 311
            I N L P      + ++ 
Sbjct: 294 SISNGLIPATPLRIARLLL 312


>gi|157813210|gb|ABV81350.1| putative signal recognition particle protein [Antheraea
           paukstadtorum]
          Length = 102

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF-LGVGEGINDLEPFVAKDFSA 308
           + F        +I+TK+DG A+GGG +  V     P+ F L  GE I+DLEPF  K F  
Sbjct: 1   KAFKEKVDIGSVIITKLDGHAKGGGALSAVAATHSPIIFFLVTGEHIDDLEPFKTKPFIN 60

Query: 309 VITGCLD 315
            + G  D
Sbjct: 61  KLLGTGD 67


>gi|293510003|ref|ZP_06668711.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M809]
 gi|291466947|gb|EFF09465.1| signal recognition particle protein [Staphylococcus aureus subsp.
           aureus M809]
          Length = 176

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAV 62
           +++ ++ +    K   G   +    +E + ++I+  R++D+   E LE++LI +D+G   
Sbjct: 77  EEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNT 134

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDV 88
              + EEL  +   +++     L +V
Sbjct: 135 VMTLTEELRMEAQRRNIQDTEDLREV 160


>gi|291538515|emb|CBL11626.1| Flagellar GTP-binding protein [Roseburia intestinalis XB6B4]
          Length = 95

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           LD      V  V+ ATT    L ++   +       LI TK+D T   G +  I +    
Sbjct: 5   LDAAYEREVYLVVSATTKYKDLLEIADRYKEIADYKLIFTKLDETEAYGNIYNIKMYSGA 64

Query: 285 PVYFLGVGEGI-NDLEPFVAKDFSAVITG 312
           P+ ++  G+ + +D+E F  +     + G
Sbjct: 65  PLSYMTNGQNVPDDIEEFNTQKIVKQLLG 93


>gi|120601208|ref|YP_965608.1| flagellar biosynthesis protein FlhF [Desulfovibrio vulgaris DP4]
 gi|120561437|gb|ABM27181.1| flagellar biosynthesis protein FlhF, putative [Desulfovibrio
           vulgaris DP4]
          Length = 365

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 83/245 (33%), Gaps = 33/245 (13%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP--------HV 113
           +A + +E        + V    ++     L+      + +P       +P         V
Sbjct: 109 LALEFLER-------EGVEDTVLMSLYRRLLTSPGASVLEPLTGMVPVKPWSREAWPQRV 161

Query: 114 ILVVGVNGVGKTTVIGKLSKK---MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            +  G  G GKTT + +++ +      AG +V +   D  R      L+ WA+ +   + 
Sbjct: 162 HVFAGPFGSGKTTTLVRMALRGQGAESAGGRVQVVNADCERGNGRLLLRHWAELSGFGY- 220

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                  A A    A + A     D + +D  G       L  G     R+         
Sbjct: 221 -------AEAADDGAMRAALDCDADRVFVDLPG-------LARGETLTQRLAHLGLGGDD 266

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            +V  VL    G          +   GT  ++ TK+D     G L+ +   + +PV  L 
Sbjct: 267 VAVHLVLPPHCGGQQTADFVNRYRAPGTASIVWTKLDEACTYGTLVNVAAANGLPVSALS 326

Query: 291 VGEGI 295
            G G+
Sbjct: 327 FGPGL 331


>gi|290889934|ref|ZP_06553021.1| hypothetical protein AWRIB429_0411 [Oenococcus oeni AWRIB429]
 gi|290480544|gb|EFD89181.1| hypothetical protein AWRIB429_0411 [Oenococcus oeni AWRIB429]
          Length = 198

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 6/136 (4%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGV 60
           S ++V  +         +G   T     E    ++++ R +D+   EELE+ LI +D+G 
Sbjct: 63  SEEQVQYKEDLEANSYEEGLTKTRSSFSEKFKMLMANFRAVDEDFFEELEETLIAADVGF 122

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLY--DVSELIHKMLMPLSKPFN---WDFSHRPHVIL 115
            +A KI  EL  +   K+ S ++ +    + +L++      +   N   +  + +P V L
Sbjct: 123 EMALKISNELQDEVRLKNASSKKDVQNTIIEKLVNVYDQAGNGENNEMLFAEAGQPSVFL 182

Query: 116 VVGVNGVGKTTVIGKL 131
            VGVNGVGKTT IGK+
Sbjct: 183 FVGVNGVGKTTTIGKM 198


>gi|206889549|ref|YP_002249861.1| flagellar GTP-binding protein, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741487|gb|ACI20544.1| flagellar GTP-binding protein, putative [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 347

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 36/286 (12%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           L+E IT +  S  LDD  +  L + LI++++   +A  ++E+                 D
Sbjct: 92  LRESITKLFPS--LDDISKRGLYNFLIKNNVEPYLALMLLEKA---------------ND 134

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           ++EL   +   L    N     + ++    G+ GVGKTT I K+ + + D   K+ML + 
Sbjct: 135 MNELRMAIENELKTCRNNFDEEKGYI--FYGLPGVGKTTTIFKIGQSLKDNNKKIMLISL 192

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D  R +++  +K  A +   +        +   + ++   +        L+IDT G    
Sbjct: 193 D-QRISSVAYIKEVALKLKCEAKFINEPKELYKIMHKEIDKKN------LLIDTPG--DV 243

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           N  L   +  +++         P     ++DA+    +  ++      A    +  +K+D
Sbjct: 244 NISLAGELKNLLK-------DMPIKKCLIMDASMSMQSSFKILKTMDTASVDCIGFSKID 296

Query: 268 GTARGGGLIPIVVTHKIPVYFLGVGE-GINDLEPFVAKDFSAVITG 312
                G L  + V    PV F+  G  G   ++       + +I G
Sbjct: 297 LAQTYGNLYNLSVLSGKPVSFITSGAYGEPQVKVLPPDTITNLIVG 342


>gi|2894132|emb|CAA04334.1| flhF [Campylobacter jejuni]
          Length = 104

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           +  +A   V  V+ A T    L ++    +      LI+TK D T   G +  +V    I
Sbjct: 14  MHSNAEIDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNI 73

Query: 285 PVYFLGVGEGI-NDLEPFVAK 304
           P+ F  +G+ + +DLE   + 
Sbjct: 74  PLSFFSIGQEVPDDLEVANSD 94


>gi|330948622|gb|EGH48882.1| signal recognition particle-docking protein FtsY [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 72

 Score = 76.4 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/72 (54%), Positives = 48/72 (66%)

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           I DTAGRLH    LM  + K+ RV+ +LD  APH VL VLDA TGQNA+ Q + F+    
Sbjct: 1   IADTAGRLHTKDNLMEELKKVRRVIGKLDADAPHEVLLVLDAGTGQNAINQAKQFNQTVT 60

Query: 258 TTGLIMTKMDGT 269
            TGL +TK+DGT
Sbjct: 61  LTGLALTKLDGT 72


>gi|46581633|ref|YP_012441.1| flagellar biosynthesis protein FlhF [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46451056|gb|AAS97701.1| flagellar biosynthesis protein FlhF, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235275|gb|ADP88129.1| flagellar biosynthetic protein FlhF [Desulfovibrio vulgaris RCH1]
          Length = 365

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 83/245 (33%), Gaps = 33/245 (13%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP--------HV 113
           +A + +E        + V    ++     L+      + +P       +P         V
Sbjct: 109 LALEFLER-------EGVEDTVLMSLYRRLLTSPGASVLEPLTGMVPVKPWSREAWPQRV 161

Query: 114 ILVVGVNGVGKTTVIGKLSKK---MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
            +  G  G GKTT + +++ +      AG +V +   D  R      L+ WA+ +   + 
Sbjct: 162 HVFAGPFGSGKTTTLVRMALRGQGAESAGGRVQVVNADCERGNGRLLLRHWAELSGFGY- 220

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                  A A    A + A     D + +D  G       L  G     R+         
Sbjct: 221 -------AEAADDGAMRAALDCDADRVFVDLPG-------LARGETLTQRLAHLGLGGDD 266

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            +V  VL    G          +   GT  ++ TK+D     G L+ +   + +PV  L 
Sbjct: 267 VAVHLVLPPHCGGQQTADFVNRYGAPGTASIVWTKLDEACTYGTLVNVAAANGLPVSALS 326

Query: 291 VGEGI 295
            G G+
Sbjct: 327 FGPGL 331


>gi|302792763|ref|XP_002978147.1| hypothetical protein SELMODRAFT_417824 [Selaginella moellendorffii]
 gi|300154168|gb|EFJ20804.1| hypothetical protein SELMODRAFT_417824 [Selaginella moellendorffii]
          Length = 175

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 8/131 (6%)

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
            A  DT R+ A D LK  A +            D   +A E  ++    K D++I+DT+G
Sbjct: 7   RACADTVRAGAFDPLKQNATKVKIP-----SEIDPVVIAQEGVRKFADAKHDLIILDTSG 61

Query: 204 RL-HNNSILMAGIGKMIRV--LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           R    N  L A     +R+  +       P  ++ V+D++  Q A  Q   F   A    
Sbjct: 62  RHKQENEELAAARVFFLRILSICSRTLQNPDLIIFVMDSSIWQAANDQTLAFIESAKVGA 121

Query: 261 LIMTKMDGTAR 271
           +I+TKMDG A+
Sbjct: 122 VIITKMDGHAK 132


>gi|268553691|ref|XP_002634832.1| Hypothetical protein CBG13941 [Caenorhabditis briggsae]
          Length = 114

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 18/119 (15%)

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG------- 257
           + +N  LM  + K+IRV      + P  VL V +A  G  A+ Q+  F+           
Sbjct: 1   MQDNEPLMRELAKLIRV------NEPDLVLFVGEALVGNEAVDQLVKFNEALANHAAPGQ 54

Query: 258 ----TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                 G+++TK D    + G  + +      P+ F+G G+   DL           + 
Sbjct: 55  KPRLIDGIVLTKFDTIDDKVGAAVSMTYITGQPIVFVGCGQTYADLRNLNVGAVVNSLL 113


>gi|317153076|ref|YP_004121124.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943327|gb|ADU62378.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 356

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 93/256 (36%), Gaps = 28/256 (10%)

Query: 71  LTKRYAKDVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGV 122
           L     +DV  + +     EL       I  +L  + +   +  S  P VI    G  G 
Sbjct: 106 LEYLEREDVDDRAMTRIFCELREDADRSIITVLESMVEVKPFQASRWPGVIHAFAGPGGA 165

Query: 123 GKTTVIGKLSKKMSDAGLK--VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GKT+ + +L+ +   +  K  + LA  D  R      LK +A+ +   F       D   
Sbjct: 166 GKTSSLIRLALREKKSNPKARICLATADGGRGKGRLVLKHYAELSCLAFRELMTRDDFML 225

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           L  EA       + D+++ID  G   N ++        +   + L      S+  VL+  
Sbjct: 226 LRREA------DQFDMILIDLPGLPGNTTLEEFTALYGLSTCENL------SIHLVLNPY 273

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
             Q    +    +       +I TK+D T   G L+ +     +P+  L  G    DL+ 
Sbjct: 274 YSQTQFDRFMEKYKSEQLASVIWTKLDETCTFGALLNMAFASGLPISALSYG---ADLKN 330

Query: 301 FVA---KDFSAVITGC 313
            +A   KD    +   
Sbjct: 331 SIAPATKDMIWRMLFM 346


>gi|323698079|ref|ZP_08109991.1| GTP-binding signal recognition particle SRP54 G- domain
           [Desulfovibrio sp. ND132]
 gi|323458011|gb|EGB13876.1| GTP-binding signal recognition particle SRP54 G- domain
           [Desulfovibrio desulfuricans ND132]
          Length = 358

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 16/201 (7%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
             G  G GKT+ + +L+ +M     G+++ LA  D  R      LK +A+ +   F    
Sbjct: 161 FAGPGGAGKTSSLVRLALRMKKEQPGMRLCLATADGGRGKGRLILKHYAELSGLAFREII 220

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D       A  + +A++ D+++ID  G     ++           L  L      S+
Sbjct: 221 TKDDF------ALLRDEARQFDMILIDLPGLSGRTTLEEW------SRLYGLHECPDLSI 268

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             VL+    +    +    +       +I TK+D     G ++ +     +PV  L  G 
Sbjct: 269 HLVLNPYYSKGQFERFVDKYKSEQLASVIWTKLDEACTFGAILNMAFAGGLPVSALSYGP 328

Query: 294 GI-NDLEPFVAKDFSAVITGC 313
           G+ N + P   ++    +   
Sbjct: 329 GLKNSISP-ATEEMIWRLMFM 348


>gi|153840596|ref|ZP_01993263.1| cell division protein FtsY [Vibrio parahaemolyticus AQ3810]
 gi|149745742|gb|EDM56872.1| cell division protein FtsY [Vibrio parahaemolyticus AQ3810]
          Length = 196

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q+    + S+  +L +  + T   +  G   + S +++DD + EELE+ L+ +D+G+   
Sbjct: 98  QEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTT 157

Query: 64  QKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSK 101
            KI+  L  K    D+     LY  + E + ++L  + +
Sbjct: 158 TKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQ 196


>gi|223042039|ref|ZP_03612217.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus minor 202]
 gi|223017169|gb|EEF15603.1| signal recognition particle protein (sigma-54 like protein)
           [Actinobacillus minor 202]
          Length = 101

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 9/99 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + S +L + + +I    RL +        E+   L+ +D+ + V ++ + ++  +   
Sbjct: 2   FENLSDRLSKTLKNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERAIG 61

Query: 77  KDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           ++V+      Q  L  V   + K +   ++  N      
Sbjct: 62  EEVNKSLTPGQEFLKIVQAELEKAMGEANEGLNLATQPP 100


>gi|308457114|ref|XP_003090954.1| hypothetical protein CRE_22168 [Caenorhabditis remanei]
 gi|308259782|gb|EFP03735.1| hypothetical protein CRE_22168 [Caenorhabditis remanei]
          Length = 114

 Score = 73.7 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 18/119 (15%)

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG------- 257
           + +N  LM  + K+IRV      + P  VL V +A  G  A+ Q+  F+           
Sbjct: 1   MQDNEPLMRELAKLIRV------NEPDLVLFVGEALVGNEAVDQLVKFNEALANHAAPGA 54

Query: 258 ----TTGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
                 G+++TK D    + G  + +      P+ F+G G+   DL           + 
Sbjct: 55  KPRLIDGIVLTKFDTIDDKVGAAVSMTYITGQPIVFVGCGQTYADLRNLNVGAVVHSLL 113


>gi|62732735|gb|AAX94854.1| Similar to chloroplast SRP54 precursor [Oryza sativa Japonica
           Group]
          Length = 180

 Score = 73.7 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
                 +LT G  S   KL+    D+++   + + +R+ +   L+ +D+ + V ++ V  
Sbjct: 68  RAEMFGQLTTGLESAWNKLRGV--DVLTKENIVEPMRD-IRRALLEADVSLPVVRRFVSS 124

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVVGVNGV 122
           +  K    D+   R +    +L+   L   S     +      H  LV  + G 
Sbjct: 125 ISEKALGSDLI--RGVRPEQQLVKTNLCAFSTGQITYSVVQIVHDELVKLMGGE 176


>gi|167946939|ref|ZP_02534013.1| cell division protein FtsY [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 52

 Score = 73.4 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 264 TKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           TK+DGTA+GG +  I    K+P+ F+GVGE + DL  F  ++F 
Sbjct: 1   TKLDGTAKGGVIFAIGDKLKLPIRFIGVGESVEDLREFNPQEFV 44


>gi|114569231|ref|YP_755911.1| GTP-binding signal recognition particle [Maricaulis maris MCS10]
 gi|114339693|gb|ABI64973.1| GTP-binding signal recognition particle SRP54, G- domain
           [Maricaulis maris MCS10]
          Length = 330

 Score = 73.4 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 67/208 (32%), Gaps = 31/208 (14%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           H +L  G  GVGKT+ + K + +   AG    L + D  R+ A D+L+  A R  A F  
Sbjct: 135 HAVLFAGTPGVGKTSALAKTAARAITAGAVPTLISCDGERAGASDRLQELARRMGAGFRV 194

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAP 230
            +   +           A       ++ID+          L   +             A 
Sbjct: 195 VDDPREMID--------AVDDIDGPVLIDSPAINPFELDDLDMTLAF--------ADSAN 238

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL-------IPIVVTHK 283
             ++ V DA              A  G +  I  K+D   R G +       +       
Sbjct: 239 AEIIYVFDAGLTPEDAEDAASLFASIGASRCIPVKLDCARRLGAILGVGETGLAFAQISS 298

Query: 284 IPVYFLGVGEGINDLEPFVAKDFSAVIT 311
            P  F+G G     L P      + V+ 
Sbjct: 299 TP--FIGGG-----LAPATPLRMARVLV 319


>gi|242219969|ref|XP_002475757.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725029|gb|EED79036.1| predicted protein [Postia placenta Mad-698-R]
          Length = 116

 Score = 73.0 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 14/115 (12%)

Query: 212 MAGIGKMIRVLKRLDP-HAPHSVLQVLDATTGQNALRQVEMFHAVA------------GT 258
           M     ++R L +L   + P  ++ V +A  G  A+ Q+  F                G 
Sbjct: 1   MQDNEPLMRALAKLVAVNTPDKIIFVGEALVGNEAVDQLTKFDRALRDFSASSGGKERGI 60

Query: 259 TGLIMTKMDG-TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
            G+++TK D    + G  + +      P+ F+G G+   DL      +    I G
Sbjct: 61  DGMLVTKWDTVDDKVGAALSMTYVTGQPIIFVGCGQTYTDLRQLRVANVVQAILG 115


>gi|237800083|ref|ZP_04588544.1| signal recognition particle protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806412|ref|ZP_04593116.1| signal recognition particle protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022938|gb|EGI02995.1| signal recognition particle protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027525|gb|EGI07580.1| signal recognition particle protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 104

 Score = 73.0 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F + + +L + +  +    +L++        E+   L+ +D+ + V +  V  +  +   
Sbjct: 2   FENLTDRLSQTLRHVTGKAKLNEDNIKDTLREVRMALLEADVALPVVKDFVNSVRERAVG 61

Query: 77  KDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
            +VS      Q  +  V   +  ++   ++    + +  P VIL
Sbjct: 62  TEVSRSLTPGQAFVKIVQAELESLMGAANEDLVLNVT-PPAVIL 104


>gi|325273559|ref|ZP_08139788.1| flagellar biosynthesis regulator FlhF [Pseudomonas sp. TJI-51]
 gi|324101308|gb|EGB98925.1| flagellar biosynthesis regulator FlhF [Pseudomonas sp. TJI-51]
          Length = 294

 Score = 73.0 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 20/174 (11%)

Query: 14  IRKLTKGFASTSLKLKEGI-----TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
              +    +     L+  +     T +  S+     +   L+ + +       +A++++E
Sbjct: 127 FDAMRSELSGLRELLEVQLGSLAWTQLQGSKPQQANIWRRLQRIGLSG----PIARELLE 182

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
                    ++   R  + +   +   L  + +    +      VI +VG  G+GKTT +
Sbjct: 183 ------LTAEIEEPRHAWRM---LLAHLARMIEIPEVEPIEEGGVIAMVGPAGMGKTTTL 233

Query: 129 GKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
            KL+ +         + L + D+FR  A +QLK      +      + G   AA
Sbjct: 234 AKLAARYVLKYGAQNMALVSMDSFRIGAQEQLKTLGRILNVPVTYVDPGQSLAA 287


>gi|145652257|gb|ABP88183.1| putative FlhF [Borrelia lonestari]
          Length = 138

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            +K  D+++IDT G+   + + +A + +++    R            + +TT  + ++++
Sbjct: 1   NSKDFDLVLIDTIGKSPKDFMKLAEMKELLSACGR-----DAEFHLAVSSTTKTSDIKEI 55

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND-LEPFVAKDFSA 308
               A      +I TK+D T   G LI ++   +  V ++  G+ +   +       F  
Sbjct: 56  FHQFAPFNYKTVIFTKLDETTCVGNLISLIHEMRKEVSYVTDGQIVPHNISIAEPLTFIK 115

Query: 309 VITG 312
            I G
Sbjct: 116 KING 119


>gi|332701288|ref|ZP_08421376.1| AAA ATPase [Desulfovibrio africanus str. Walvis Bay]
 gi|332551437|gb|EGJ48481.1| AAA ATPase [Desulfovibrio africanus str. Walvis Bay]
          Length = 369

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 78/201 (38%), Gaps = 17/201 (8%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG--LKVMLAAGDT 149
           + ++L    +P     S    +  V G +GVGKTT + +++         L++ L   D 
Sbjct: 147 LAEILS--VRPLTL-ASWPEKIHCVAGPSGVGKTTTVIRMALAAQQEKPDLRICLVNADD 203

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            ++     L+ + + +   +  +    D   L  EA         D + +D  G      
Sbjct: 204 RQARGRLVLRHYCELSGFSYREAGSREDILKLLDEA------DNFDRIYVDLPGMSGPQV 257

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L   +  +   L  +D  A H    VL    G+  L       + A  + +I TK+D  
Sbjct: 258 -LSERLTLL--GLSEVDECAFH---LVLSPHYGKPQLDHFLRAFSFARLSSVIWTKLDEA 311

Query: 270 ARGGGLIPIVVTHKIPVYFLG 290
           A  GGLI +  + ++P+  + 
Sbjct: 312 ASFGGLINVADSCRVPISAVS 332


>gi|304321252|ref|YP_003854895.1| flagellar biosynthetic protein FlhF [Parvularcula bermudensis
           HTCC2503]
 gi|303300154|gb|ADM09753.1| flagellar biosynthetic protein FlhF [Parvularcula bermudensis
           HTCC2503]
          Length = 378

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 24/204 (11%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I++VG  G GKT+   KL+ + +D G ++   + D  R+ AI+Q++ +A+     F   E
Sbjct: 182 IMLVGQTGAGKTSCAAKLAARAADEGGRIAFMSADIGRAGAIEQMQTYAEALDTRFWAIE 241

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                A +          +  + L++DT G     +  +A +     VL           
Sbjct: 242 DPDHVAEILRH------DRPAEPLVLDTPGVSPYANADVAAMRAFRDVLGA-------EP 288

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY------ 287
           + V+ A+             A  G    I+TK D + R G  I       + +       
Sbjct: 289 ILVIPASGDLQEHVDWIQAFADVGVRRAIITKFDTSRRIGAAISGCFEAGVALAHFSEAP 348

Query: 288 FLGVGEGINDLEPFVAKDFSAVIT 311
           F+  G     L        +  + 
Sbjct: 349 FIADG-----LIDADPDYLAHRLL 367


>gi|256831230|ref|YP_003159958.1| flagellar biosynthesis protein FlhF [Desulfomicrobium baculatum DSM
           4028]
 gi|256580406|gb|ACU91542.1| flagellar biosynthesis protein FlhF, putative [Desulfomicrobium
           baculatum DSM 4028]
          Length = 353

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 77/206 (37%), Gaps = 19/206 (9%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDTFRSA 153
           ++ LS  F+ ++SH+ H  L+ G  G GKT+   +L+  +       ++++   D  +  
Sbjct: 140 MVSLSPWFDTNWSHKFH--LLTGPFGSGKTSTTLRLALSLKKTRPKARILVVNADRSQGK 197

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
               L+ + + +   +   +  +   +L  +A      +  D++++D  G   +  +   
Sbjct: 198 GRLYLRHYTELSGLSYRELDNSAHWESLERDA------RSHDLVLLDLPGLPAHQQL--- 248

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
               +  V     P     V  VL        +         A    +I TK+D     G
Sbjct: 249 -DSWLQEVSGGKLPACH--VHLVLSPLFAPTQMDAFVSRFRSASAASIIWTKLDEACNYG 305

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLE 299
            +I       +P+    +G    DL+
Sbjct: 306 EIINQANNTGLPISLFSMG---PDLK 328


>gi|94986971|ref|YP_594904.1| flagellar GTP-binding protein [Lawsonia intracellularis PHE/MN1-00]
 gi|94731220|emb|CAJ54583.1| Flagellar GTP-binding protein [Lawsonia intracellularis PHE/MN1-00]
          Length = 353

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 14/182 (7%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           G  G GKTT   +++  +      +++     D  R+ +   LK WA+ +   +  +   
Sbjct: 161 GPFGAGKTTSALRMALLLRKTDPSIRIGFINADCERANSRLVLKHWAELSEFGYFEASDP 220

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
                +  +       +  D L ID  G  +    L   +  +              V  
Sbjct: 221 ESMEKVIEQ------NEDKDYLFIDFPGISNPKETLTMQLSAL------GLSSMEFVVHL 268

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI 295
            L         +     +     + ++ TK+D  A  G ++ + +   +P+  L  G G+
Sbjct: 269 ALPPHYATLQNQAFLSKYQSQHLSSIVWTKLDEAATYGSIVNVAMATGLPISALSYGIGL 328

Query: 296 ND 297
           +D
Sbjct: 329 SD 330


>gi|260222458|emb|CBA32042.1| hypothetical protein Csp_D30140 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 470

 Score = 71.4 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 58/169 (34%), Gaps = 15/169 (8%)

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            V L   DT+R  A +QL+ +          +   +    L              +++ID
Sbjct: 279 SVGLITLDTYRIGAHEQLRAYGKMLGVVAHLAHDKAALQDLL------GLLSNKKMVLID 332

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           T G    +           R L  L        L VL+A    + L +       A T  
Sbjct: 333 TTGIAPRDPR--------KRELLELLDLPEIKRLLVLNAGGHGDTLDEAVGCFKGASTQQ 384

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
           +I++K D   + G  I   + H++ +     G+ +  D EP VA     
Sbjct: 385 VILSKTDEAVKLGPAIDACIRHQLLLRGTTTGQRVPEDWEPAVAAKLVR 433


>gi|302807387|ref|XP_002985388.1| hypothetical protein SELMODRAFT_122109 [Selaginella moellendorffii]
 gi|300146851|gb|EFJ13518.1| hypothetical protein SELMODRAFT_122109 [Selaginella moellendorffii]
          Length = 157

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 21/131 (16%)

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +Q    K +++II+ +GR   ++ L   + ++    K      P  ++ V+D ++     
Sbjct: 3   QQGVDAKRNLIIINMSGRHKQDAALFEEMRQLAVATK------PDLIVFVMDGSSSC--- 53

Query: 247 RQVEMFHAVAGTTGLIMT-KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKD 305
                        G   + +     +GGG +  V   K P+ FLG GE +NDLE F ++ 
Sbjct: 54  -----------VQGECPSWRCYHHGKGGGTLRAVAATKSPIIFLGTGERLNDLEVFESRS 102

Query: 306 FSAVITGCLDY 316
           F+  + G  D 
Sbjct: 103 FANKLLGMADL 113


>gi|306836412|ref|ZP_07469389.1| cell division protein FtsY [Corynebacterium accolens ATCC 49726]
 gi|304567693|gb|EFM43281.1| cell division protein FtsY [Corynebacterium accolens ATCC 49726]
          Length = 551

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL 85
             + +G+  I+S+  LD+   EE+ED LI +D+G     K+ + L  K   + VS +   
Sbjct: 425 NAIGQGLMGILSAGDLDEDAWEEIEDTLIMADLGTKSTMKVTDSLRDKIAERGVSSEEEA 484

Query: 86  YD-VSELIHKMLMPLSKPF--NWDFSHRPHVILVVGVN 120
              + E + +   P             +P +++VVGVN
Sbjct: 485 RAMLRECLIEACHPEMDRSIRAMPNDGKPAIVMVVGVN 522


>gi|289755029|ref|ZP_06514407.1| signal recognition particle protein [Mycobacterium tuberculosis
           EAS054]
 gi|289695616|gb|EFD63045.1| signal recognition particle protein [Mycobacterium tuberculosis
           EAS054]
          Length = 124

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 74  RYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           R   +VS      Q+V+  V+E +  +L   ++   +     P V+++ G+ G GKTT+ 
Sbjct: 47  RRGAEVSSALNPAQQVVKIVNEELISILGGETRELAF-AKTPPTVVMLAGLQGSGKTTLA 105

Query: 129 GKLSKKMSDAGLKVMLAA 146
           GKL+ ++   G   +L A
Sbjct: 106 GKLAARLRGQGHTPLLVA 123


>gi|144897410|emb|CAM74274.1| flagellar biosynthesis protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 333

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 79/239 (33%), Gaps = 28/239 (11%)

Query: 42  DDGVREELEDLLIR--SDIGVAVAQK-------IVEELLTKRYAKDVSVQRVLYDVSELI 92
           D  V E LE+  +   +D  V  A +       ++E L+      D++   +        
Sbjct: 52  DLAVAEMLEESSLSSAAD-AVKAALENHNLPPRLLERLVNAARTSDITEPTL------AC 104

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
              L              P   +++G  G GK+    KL+ +       V +   D  R+
Sbjct: 105 AAALEAGFAFAPLPEHSAPRPFMLIGPPGSGKSIAAAKLAARSVLKQRHVGIITCDNMRA 164

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A++QL  +      + V +            A         D+++ID+ G        +
Sbjct: 165 GAVEQLAAFTRIMEIELVRARGPDALRKAVENA-----TGMFDLIVIDSPGLNPFKQSDL 219

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
             +  +I         A    L V+ A        ++    A  G T L  T++D T R
Sbjct: 220 DFLQALIEA-------ADVEPLLVMAAGGDPFEAAEMAEAFAGIGATRLFTTRLDTTRR 271


>gi|221128015|ref|XP_002154593.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 741

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 58/169 (34%), Gaps = 15/169 (8%)

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            V L   DT+R  A +QL+ +          +   +    L              +++ID
Sbjct: 550 SVGLITLDTYRIGAHEQLRAYGKMLGVVAHLAHDKAALQDLL------GLLSNKKMVLID 603

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           T G    +           R L  L        L VL+A    + L +       A T  
Sbjct: 604 TTGIAPRDPR--------KRELLELLDLPEIKRLLVLNAGGHGDTLDEAVGCFKGASTQQ 655

Query: 261 LIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSA 308
           +I++K D   + G  I   + H++ +     G+ +  D EP VA     
Sbjct: 656 VILSKTDEAVKLGPAIDACIRHQLLLRGTTTGQRVPEDWEPAVAAKLVR 704


>gi|114800519|ref|YP_759669.1| flagellar biosynthesis protein FlhF-like protein [Hyphomonas
           neptunium ATCC 15444]
 gi|114740693|gb|ABI78818.1| flagellar biosynthesis protein FlhF homolog [Hyphomonas neptunium
           ATCC 15444]
          Length = 315

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 105/286 (36%), Gaps = 33/286 (11%)

Query: 33  TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSEL 91
            ++   R  D+ V   + D L+    G    Q+  E +  +   +           ++E 
Sbjct: 42  RNLGHGRGADNPVFARVRDALLWH--GAP--QRFAERVANEGAGRRPGEFSTPEEAMAEG 97

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           + +M+     P   D       IL+VG  G G+T+   KL+++ S A  ++   A D   
Sbjct: 98  LSRMVTCDPIPARLDRD-----ILLVGPPGAGRTSTAAKLTRRASVARTEITPLAADLDG 152

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           SA  +QL  + +R  A    +E      +       +++       +ID           
Sbjct: 153 SAGGEQLAAYLERERAQIRVAETPDALFSELRALRNESRR-----CVIDLPAINPFEGDD 207

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           +A +G ++  ++          + VL A    + L +       AG    I+TK+D   R
Sbjct: 208 LASLGDLVAAIRA-------EPVLVLSAEGHPDDLAESARAFHRAGVRRAILTKLDVVRR 260

Query: 272 GGGLIPIVVTHKIPVY------FLGVGEGINDLEPFVAKDFSAVIT 311
            GG I  + +  I         F+G G     L P      +A++ 
Sbjct: 261 RGGAIAALTSSGIAFSHLAITPFIGGG-----LVPAAPSRLAALLM 301


>gi|169837028|ref|ZP_02870216.1| Signal recognition particle, subunit FFH/SRP54 [candidate division
           TM7 single-cell isolate TM7a]
          Length = 114

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 21  FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           F +   + K+    +    +L +        E+   L+ +D+   VA+  V ++  K   
Sbjct: 2   FNNLGDRFKDIFKKVSGQGKLTENNMKDALREVRLALLEADVNYGVAKNFVAKIREKALG 61

Query: 77  KDV-----SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           + V       Q+ +  V++ + ++L   +          P ++++ G+ 
Sbjct: 62  EQVISGVNPTQQFIKIVNDELVEVLGGSNVSI-AKAEKNPTIVMLSGLQ 109


>gi|207108795|ref|ZP_03242957.1| cell division protein (ftsY) [Helicobacter pylori HPKX_438_CA4C1]
          Length = 63

 Score = 70.3 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
             G+IMTK+DGT++GG ++ ++   K+P+ +LG+GE  +DL  F  + F   + 
Sbjct: 3   LDGVIMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLV 56


>gi|326403663|ref|YP_004283745.1| putative signal recognition particle protein [Acidiphilium
           multivorum AIU301]
 gi|325050525|dbj|BAJ80863.1| putative signal recognition particle protein [Acidiphilium
           multivorum AIU301]
          Length = 289

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 18/207 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            RP VI   G  G GKT    KL+ +   AG++  +   D  R+ A  QL        A+
Sbjct: 90  DRPLVI--AGPPGAGKTMTTVKLATRFVLAGVRPTVINADQNRAGASAQLAALCRILRAE 147

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F+ +              ++  A +   L ID  G    +   M  +  M+  +  +   
Sbjct: 148 FIDTASKKG-------GMRRRPASRRPTL-IDLPGMDPFDKSEMDDLRSMVEEVSGVAA- 198

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
                  V+ A        ++      AG T LI T++D + R GGL+    +  + +  
Sbjct: 199 ------LVMPAGLDAADSVEIASRFHEAGATALIPTRLDVSRRLGGLVAAAGSVPLQLTE 252

Query: 289 LGVGEGIND-LEPFVAKDFSAVITGCL 314
            G    ++D LE          +    
Sbjct: 253 AGTSGRVSDALETVTPAFLVRRLLDAG 279


>gi|148260470|ref|YP_001234597.1| GTP-binding signal recognition particle [Acidiphilium cryptum JF-5]
 gi|146402151|gb|ABQ30678.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Acidiphilium cryptum JF-5]
          Length = 293

 Score = 69.9 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 18/207 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            RP VI   G  G GKT    KL+ +   AG++  +   D  R+ A  QL        A+
Sbjct: 94  DRPLVI--AGPPGAGKTMTTVKLATRFVLAGVRPTVINADQNRAGASAQLAALCRILRAE 151

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           F+ +              ++  A +   L ID  G    +   M  +  M+  +  +   
Sbjct: 152 FIDTASKKG-------GMRRRPASRRPTL-IDLPGMDPFDKSEMDNLRSMVEEVSGVAA- 202

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
                  V+ A        ++      AG T LI T++D + R GGL+    +  + +  
Sbjct: 203 ------LVMPAGLDAADSVEIASRFHEAGATALIPTRLDVSRRLGGLVAAAGSVPLQLTE 256

Query: 289 LGVGEGIND-LEPFVAKDFSAVITGCL 314
            G    ++D LE          +    
Sbjct: 257 AGTSGRVSDALETVTPAFLVRRLLDAG 283


>gi|145628345|ref|ZP_01784146.1| cell division protein FtsY [Haemophilus influenzae 22.1-21]
 gi|144980120|gb|EDJ89779.1| cell division protein FtsY [Haemophilus influenzae 22.1-21]
          Length = 206

 Score = 69.9 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            +  +L KG   T   +  G       +++DD + EELE+ L+ +DIGV    KI++ L 
Sbjct: 105 GFFSRLVKGLLKTKQNIGAGFRSFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLT 164

Query: 72  TKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSH 109
                K++    +LY  +   +  +L P+++P   D + 
Sbjct: 165 EHASRKELQDAELLYQQLKVEMADILEPVAQPLEIDSTK 203


>gi|167950623|ref|ZP_02537697.1| flagellar biosynthesis regulator FlhF [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 359

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 14/142 (9%)

Query: 121 GVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GVGKTT I KL+    +      + L   D++R  A +QL  +    +   V S   +D 
Sbjct: 223 GVGKTTSIAKLAAHFCLRQGSRSLALITCDSYRIGAQEQLHNYGRILNVP-VRSAASADE 281

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            + A   F         +++IDTAG    +      +  +         + P + L  L 
Sbjct: 282 LSDALHTF-----SGKRLVLIDTAGMSQRDLQFSERLSLI------TAGNHPVTTLLTLS 330

Query: 239 ATTGQNALRQVEMFHAVAGTTG 260
           ATT + A+        VA   G
Sbjct: 331 ATTQRAAMNHAVNAFRVANPGG 352


>gi|325273561|ref|ZP_08139789.1| flagellar biosynthesis regulator FlhF [Pseudomonas sp. TJI-51]
 gi|324101300|gb|EGB98918.1| flagellar biosynthesis regulator FlhF [Pseudomonas sp. TJI-51]
          Length = 129

 Score = 69.5 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             VL  T+ +  L      +   G  G I+TK+D TA  G ++ + ++H +PV +L  G 
Sbjct: 23  YLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHDLPVAYLTDGP 82

Query: 294 GIND 297
            I D
Sbjct: 83  RIPD 86


>gi|289644823|ref|ZP_06476876.1| cell division protein FtsY [Frankia symbiont of Datisca glomerata]
 gi|289505379|gb|EFD26425.1| cell division protein FtsY [Frankia symbiont of Datisca glomerata]
          Length = 51

 Score = 69.5 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITG 312
           +DGTA+GG +I +     +PV  +G+GEG +DL PF  + F   + G
Sbjct: 1   LDGTAKGGIVIAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVDALLG 47


>gi|218887103|ref|YP_002436424.1| flagellar biosynthesis protein FlhF [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758057|gb|ACL08956.1| flagellar biosynthesis protein FlhF, putative [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 419

 Score = 69.5 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 11/183 (6%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +  G  G GKTT + +++  +      LK++L   D  R      LK +A+ ++  +  +
Sbjct: 164 VFAGPFGAGKTTAMLRMALALRREKPDLKIVLVNADCGRGHGRLLLKHYAELSNLVYREA 223

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
              ++ AA+  E    A+      +++D  G +  +  L   +   I  L      +  +
Sbjct: 224 STAAEFAAILRECPDAAR------ILVDLPG-VARDGSLARQLA--ILGLSGAGAGSGVA 274

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V  VL    G   +  +   +A  GT  L+ TK+D     G L+ +     +PV  L  G
Sbjct: 275 VHLVLPPHHGPAQMTALLARYAFEGTGSLVWTKLDEACTFGALVNVAAACGLPVSALSYG 334

Query: 293 EGI 295
            G+
Sbjct: 335 PGM 337


>gi|225850936|ref|YP_002731170.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Persephonella marina EX-H1]
 gi|225646523|gb|ACO04709.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Persephonella marina EX-H1]
          Length = 308

 Score = 69.5 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 112/301 (37%), Gaps = 51/301 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
           S +K  ++    I K+   F   S +L   +   +   +L++ + +E++ + +       
Sbjct: 44  SPEKKETKLKKNIHKIDHKFNPLS-RLLSILDKGLIPGKLEESLLDEIKGIYL------- 95

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
              KI E +                D+ E I K               +   I V+G   
Sbjct: 96  ---KIAENIEG-------------IDIQEKIEK------------DPFKKKYITVLGNIS 127

Query: 122 VGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
            GK+T + K+   +      K+ +A+ D ++    + LK + +     F   +   D   
Sbjct: 128 SGKSTTVAKIGAILKFNKNRKIAIASFDFYKIGGSESLKKFCEIMQIPFFLIKNEKDLI- 186

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           L  +AF++      D ++ DT G +         + ++ +++  +   +    +  +  T
Sbjct: 187 LYKDAFEE-----FDHILFDTPGNI-------KQLPEVEKIVSFITNSSQSENILTVPLT 234

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLE 299
             +N + +   + +      LI+TK D       LI I++     + ++  G  +  D++
Sbjct: 235 RKENIVEKDINYFSKFNIDHLILTKYDEIQNSIPLIFIILNWNYKISYITDGMDVPKDIK 294

Query: 300 P 300
            
Sbjct: 295 E 295


>gi|289523550|ref|ZP_06440404.1| flagellar biosynthesis protein FlhF [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503242|gb|EFD24406.1| flagellar biosynthesis protein FlhF [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 155

 Score = 69.1 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 14/150 (9%)

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           ++QL+ +A              +         K       ++++ D  GR   +   +  
Sbjct: 1   MEQLRTYASILEVPMEVVSNKEEIE-------KALGKHDAEIVLTDLPGRNQKDFARLQE 53

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
             K+   L       P  V  ++ A +    +  V     +     +I TK+D T     
Sbjct: 54  YSKVYEAL------RPDCVHLLIAANSSYETMVDVVEKLKIVPYNAVIFTKVDETTFLSN 107

Query: 275 LIPIVVTHKIPVYFLGVGEGIN-DLEPFVA 303
           +  ++ T+ IP+ ++  G+ +  D+E    
Sbjct: 108 IFKLMKTYNIPLSYITTGQDVPSDIEIASP 137


>gi|254821850|ref|ZP_05226851.1| hypothetical protein MintA_18092 [Mycobacterium intracellulare ATCC
           13950]
          Length = 218

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +++A      + +L    A +       +  +I    LD+   +++ED L+ +D+G  VA
Sbjct: 135 EEIAPPE-GRLERLRGRLARSQSAFGRSMLGLIGGGDLDEDAWQDVEDTLLVADLGPVVA 193

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV 88
           + ++ +L  +    DV  +     V
Sbjct: 194 ESVIAQLRARLAGSDVRTEADAKAV 218


>gi|303248002|ref|ZP_07334268.1| flagellar biosynthesis protein FlhF [Desulfovibrio fructosovorans
           JJ]
 gi|302490559|gb|EFL50464.1| flagellar biosynthesis protein FlhF [Desulfovibrio fructosovorans
           JJ]
          Length = 377

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 14/180 (7%)

Query: 115 LVVGVNGVGKTTVIGK--LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           + VG +GVGKTT + +  L+ +  ++G +V++   D  R      L+ +A+ +   +  +
Sbjct: 175 MFVGPSGVGKTTALLRQALAVRREESGRRVVVVNADGDRGKGRLLLRHYAELSGLTYAEA 234

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +   D   +   A         D + IDT G     ++        I     L  H    
Sbjct: 235 DGPEDFRRILDGAASG------DAVFIDTPGLRGEGAMAGWCREMGIAGRTDLCAH---- 284

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
              VL               +A      +I TK+D     G L+ +     +P+  L  G
Sbjct: 285 --LVLSPLYAPAQTAHFWRIYACEPLASIIWTKLDEACNYGCLVNMAHAASLPISALAHG 342


>gi|242280060|ref|YP_002992189.1| flagellar biosynthesis protein FlhF [Desulfovibrio salexigens DSM
           2638]
 gi|242122954|gb|ACS80650.1| flagellar biosynthesis protein FlhF, putative [Desulfovibrio
           salexigens DSM 2638]
          Length = 362

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 87/229 (37%), Gaps = 16/229 (6%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAG- 139
           Q++  D S+ I   L  ++     D  + P     + G +G GKT+ I +L+ K      
Sbjct: 125 QQLRGDKSKAILPELEKIAPVRALDSKNWPQKFQALAGPHGAGKTSTIIRLALKEKKENP 184

Query: 140 -LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             ++ LA+ D  +      L+ +AD +  +F       D A L  E      ++K D + 
Sbjct: 185 TARICLASADQGQGKGRLVLRHYADLSGLEFRELASREDFAKLIGE------SRKFDRVF 238

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           ID  G   N     A +   +       P    +V  VL+                 +  
Sbjct: 239 IDLPGLGGN-----AELEGWLTACGMHGP-CDLAVHLVLNPYYAPAQYTAFLKKFQSSKV 292

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGI-NDLEPFVAKDF 306
             LI TK+D     G L+       +PV  L  G G+ N ++P   KDF
Sbjct: 293 KSLIWTKLDEACNYGALVNTSYESGLPVSLLSYGSGLRNSMQPACEKDF 341


>gi|308126181|ref|ZP_07663661.1| flagellar biosynthesis regulator FlhF [Vibrio parahaemolyticus
           AQ4037]
 gi|308107400|gb|EFO44940.1| flagellar biosynthesis regulator FlhF [Vibrio parahaemolyticus
           AQ4037]
          Length = 125

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             +  L   +  +++     +         VL AT  +  L++          +G I+TK
Sbjct: 3   QRDVRLSEQLDTLMQ-----ESGEVIHSYLVLPATAQRRVLQETLDHFRRIPLSGCILTK 57

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAV 309
           +D +   G  I +V+ + +PV ++  G+ +  D+     K   A 
Sbjct: 58  LDESLSLGEFISVVIQNAMPVAYIANGQRVPEDIVIAQPKYMLAK 102


>gi|415431|gb|AAB27926.1| GTP-binding protein [Drosophila sp.]
          Length = 168

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 15/102 (14%)

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +   +A +A EA K A   +VDV+++DTAGR+ +N  LM  + K+I+V      + P  V
Sbjct: 67  VRQGSAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSLSKLIKV------NNPDLV 120

Query: 234 LQVLDATTGQNALRQVEMFHAVA---------GTTGLIMTKM 266
           L V +A  G  A+ Q+  F+               G+++TK+
Sbjct: 121 LFVGEALVGNEAVDQLVKFNQSLAGYSSNENRHIDGIVLTKL 162


>gi|330940688|gb|EGH43701.1| flagellar biosynthesis regulator FlhF [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 103

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
            + +  L      +   G  G I+TK+D TA  G ++ + ++H++PV +L  G  I D
Sbjct: 2   NSKKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPD 59


>gi|220903608|ref|YP_002478920.1| GTP-binding signal recognition particle SRP54 G- domain-containing
           protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867907|gb|ACL48242.1| GTP-binding signal recognition particle SRP54 G- domain protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 347

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 59/180 (32%), Gaps = 15/180 (8%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           L+ G  G GKTT   + +     A    +V     D  R      L+ WA+ ++  ++ +
Sbjct: 152 LMAGPFGFGKTTTALRFALHRRKAEPEARVAFINADCLRGNGRLVLRHWAELSNFSYLEA 211

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                  A   EA K       D + ID  G     S+        +  +      A H 
Sbjct: 212 PDR----AAMQEALKATAD--ADAVFIDVPGLDRTTSLAQWREEMGLAQVDA----ATHL 261

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
            L          A       +   G   L+ TK+D     G ++ +     +P+  L  G
Sbjct: 262 TLSPYCDAVQIQAF---LHRYKCDGPGSLVWTKLDEAVSFGTIVNVACAAGLPISALSYG 318


>gi|297794305|ref|XP_002865037.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297310872|gb|EFH41296.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 175

 Score = 63.3 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 9/161 (5%)

Query: 20  GFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
                  ++     ++  +  +D        +E+   L+ +D    +A   +E    +  
Sbjct: 2   ALEEVRGRIGRSFEEMRKTSNMDWMRLKSCLDEITCALLDADF-PRLAVDEIERNSQEII 60

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLS 132
               + +R    + E++   L     P         H P +++ +G+ GV KT      +
Sbjct: 61  NLPKASKRKGKLIYEVMLAKLSSKLDPGKSALIRGKHEPSIVMFIGLRGVDKTKTCAMYA 120

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +     G +  L   DTFR  A  +L   A          E
Sbjct: 121 RYHRKKGFRPALVCADTFRIDAFVRLNKAAKD-EVPVYGRE 160


>gi|283850716|ref|ZP_06368003.1| flagellar biosynthesis protein FlhF, putative [Desulfovibrio sp.
           FW1012B]
 gi|283573959|gb|EFC21932.1| flagellar biosynthesis protein FlhF, putative [Desulfovibrio sp.
           FW1012B]
          Length = 375

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 14/180 (7%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           + +G +GVGKTT + +L+          +V++   D  R      L+ +A+ +   +  +
Sbjct: 173 MFIGPSGVGKTTNLLRLALTARRQEPARRVVVVNADGGRGKGRLLLRHYAELSGLAYAEA 232

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +   D   +  EA         D + +DT     + ++        I   K L  H    
Sbjct: 233 DGPEDFRRIFDEA------AGGDAVFVDTPSVRGDGAMEGWCREMGISGRKGLCAH---- 282

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
               L          Q    +       L+ TK+D     G L+ +     +PV  L  G
Sbjct: 283 --LALSPLYAAPQAAQFLRVYRCEPLASLVWTKLDEACNYGSLVNMAHASSLPVSALAYG 340


>gi|239907025|ref|YP_002953766.1| flagellar biosynthesis protein FlhF [Desulfovibrio magneticus RS-1]
 gi|239796891|dbj|BAH75880.1| flagellar biosynthesis protein FlhF [Desulfovibrio magneticus RS-1]
          Length = 390

 Score = 63.0 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 60/180 (33%), Gaps = 14/180 (7%)

Query: 115 LVVGVNGVGKTTVIGKLS--KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           + +G +GVGKTT++ +L+   K       V +   D  R      L+ +A+ +  ++  +
Sbjct: 188 MFIGPSGVGKTTILLRLALDAKRRAKDGPVTVVNADAGRGKGRLMLRHYAELSGLNYAEA 247

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +           A K       + + IDT    H            +    +L  H    
Sbjct: 248 DGPEAFGRFLDGAAKG------EAVFIDTPSLTHGGGPEAWLTQWGLTGRDQLAAH---- 297

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
              VL  T                    +I TK+D     G L+ +     +PV  L  G
Sbjct: 298 --LVLSPTYSSAQSEHYLRLARCEHLASIIWTKLDEACNYGSLVNMAHASGLPVSALTYG 355


>gi|313901499|ref|ZP_07834949.1| GTP-binding signal recognition particle SRP54 G- domain
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468237|gb|EFR63701.1| GTP-binding signal recognition particle SRP54 G- domain
           [Thermaerobacter subterraneus DSM 13965]
          Length = 460

 Score = 63.0 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 102 PFNWDFSHRP--HVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQL 158
           P  +  + RP   V+ V+G  G GKTT + KL+ +   D G  V L A DT+R  A   L
Sbjct: 179 PLRFPPAGRPLAGVVAVLGPTGAGKTTTVAKLAARAVLDEGRDVALLAADTYRLGATRSL 238

Query: 159 KIWADRTSAD 168
             +A+     
Sbjct: 239 AAYAELLGLP 248



 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +DTAGR      + A +  ++  +       P  VL V+ AT        +       G 
Sbjct: 330 VDTAGRNLLLPEVAAELATLLSAV------RPWRVLLVVPATLAPAEAAALVAVGRQLGA 383

Query: 259 TGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
           T L++TK+D        +       +P+  +G G+ + D
Sbjct: 384 TDLVLTKLDECLDPAAALSRAARWGLPLALVGCGQRVPD 422


>gi|213423135|ref|ZP_03356150.1| signal recognition particle protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 35

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFS 307
           G  + I      P+ FLGVGE  + LEPF     +
Sbjct: 1   GAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIA 35


>gi|9758542|dbj|BAB08936.1| unnamed protein product [Arabidopsis thaliana]
          Length = 171

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 20  GFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
                  ++     ++  +  +D         E+   L+ +DI      +I       + 
Sbjct: 2   ALEEVRGRIGRSFEEMNKTSNMDCTKLKSCLNEITCALLDADIPRLAVDEI-----ETKS 56

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVGKTTVIGKLS 132
            + +++ +       LI+  L     P           P +++ +G+ GV KT    K +
Sbjct: 57  LEIINLPKAPKKKGALIYMELSSKLDPGKSALIRGKLEPSIVMFIGLRGVDKTKTCAKYA 116

Query: 133 KKMSDAGLKVMLAAGDTFRS--------AAIDQLKIWADRTSADFVC 171
           +     G +  L   DTF+         AA D++ ++A     ++  
Sbjct: 117 RYHRKKGFRPALVCADTFKFDAFVRLNKAAKDEVPVYARYIYIEYFK 163


>gi|328479898|gb|EGF48969.1| signal recognition particle-docking protein FtsY [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 67

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
           AI QL+ W  R     V +  G D AA+ ++  ++A+ +  DV+++DTAGRL N   LM 
Sbjct: 1   AIQQLQEWGRRVEVPVVATNPGGDPAAVVFDGVRRAKDEGYDVVLVDTAGRLQNKVNLMN 60

Query: 214 GIGKM 218
            + K+
Sbjct: 61  ELNKL 65


>gi|38154361|gb|AAR12163.1| signal recognition particle [Streptococcus agalactiae]
          Length = 51

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +DGTA+GG ++ I     IPV F+G GE I+D+  F ++DF   + 
Sbjct: 2   IDGTAKGGVVLAIRQELDIPVKFIGFGEKIDDIGEFNSEDFMRGLL 47


>gi|313610161|gb|EFR85466.1| flagellar biosynthesis protein FlhF [Listeria monocytogenes FSL
           F2-208]
          Length = 279

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +I ++G  GVGKTT + KL  ++      V     DTFRS A++Q + +AD+   + + 
Sbjct: 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV 266


>gi|215447179|ref|ZP_03433931.1| signal recognition particle protein ffh [Mycobacterium
          tuberculosis T85]
 gi|289759037|ref|ZP_06518415.1| signal recognition particle protein ffh [Mycobacterium
          tuberculosis T85]
 gi|289714601|gb|EFD78613.1| signal recognition particle protein ffh [Mycobacterium
          tuberculosis T85]
          Length = 81

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 21 FASTSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
          F S S +L   +  +    RL D   +    E+   L+ +D+ + V +  +  +  +   
Sbjct: 2  FESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARG 61

Query: 77 KDVS 80
           +VS
Sbjct: 62 AEVS 65


>gi|145359760|ref|NP_201498.2| GTP binding [Arabidopsis thaliana]
 gi|91807104|gb|ABE66279.1| signal recognition particle-like/SRP-like [Arabidopsis thaliana]
 gi|332010902|gb|AED98285.1| signal recognition particle subunit SRP54 [Arabidopsis thaliana]
          Length = 175

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 22/170 (12%)

Query: 20  GFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
                  ++     ++  +  +D         E+   L+ +DI   +A   V+E+ TK  
Sbjct: 2   ALEEVRGRIGRSFEEMNKTSNMDCTKLKSCLNEITCALLDADI-PRLA---VDEIETKSL 57

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS------HRPHVILVVGVNGVGKTTVIG 129
                 +      + +   ML  LS   +   S        P +++ +G+ GV KT    
Sbjct: 58  EIINLPKAPKKKGALIYMMMLQELSSKLDPGKSALIRGKLEPSIVMFIGLRGVDKTKTCA 117

Query: 130 KLSKKMSDAGLKVMLAAGDTFRS--------AAIDQLKIWADRTSADFVC 171
           K ++     G +  L   DTF+         AA D++ ++A     ++  
Sbjct: 118 KYARYHRKKGFRPALVCADTFKFDAFVRLNKAAKDEVPVYARYIYIEYFK 167


>gi|303231108|ref|ZP_07317848.1| SRP54-type protein, helical bundle domain protein [Veillonella
          atypica ACS-049-V-Sch6]
 gi|302514239|gb|EFL56241.1| SRP54-type protein, helical bundle domain protein [Veillonella
          atypica ACS-049-V-Sch6]
          Length = 76

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 12 SWIRKLTKGFASTSLKLKEGITD-IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +  K+ +G   T     + +   II    +DD   ++LE +++ SD+G    + +++E+
Sbjct: 4  GFFNKIKEGLEKTRKSFVKNVETVIIGYAEIDDDFLDDLEAVMLTSDLGPKTTEYLMKEI 63

Query: 71 L 71
           
Sbjct: 64 R 64


>gi|223974933|gb|ACN31654.1| unknown [Zea mays]
          Length = 146

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL--DDGVREELEDLLIRSDIGVAVA 63
           +  ++ S + KL  GF+ T   L   + ++++   L   D V ++LE+ L+ SD G  ++
Sbjct: 52  IKEKAKSDVEKLFSGFSKTRENLS-VVDELLTYWNLADTDRVLDDLEEALLVSDFGPKIS 110

Query: 64  QKIVEELLTKRYAKDVSVQRVLY 86
            +IV+ L  +     +     + 
Sbjct: 111 FRIVDTLREEIRDGKLKSGAEIK 133


>gi|77415127|ref|ZP_00791162.1| signal recognition particle protein [Streptococcus agalactiae 515]
 gi|77158823|gb|EAO70099.1| signal recognition particle protein [Streptococcus agalactiae 515]
          Length = 70

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
             E F+     +G+++TK+DG  RGG  + +      P+ F G
Sbjct: 1   VAEEFNRQLSISGVVLTKIDGDTRGGAALSVREITGKPIKFTG 43


>gi|323954781|gb|EGB50562.1| SRP54-type protein [Escherichia coli H263]
          Length = 263

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 33/66 (50%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           ++ ++       +  +L +    T   L  G   +   +++DD + EELE+ L+ +D+GV
Sbjct: 184 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGV 243

Query: 61  AVAQKI 66
              +KI
Sbjct: 244 ETTRKI 249


>gi|255546093|ref|XP_002514106.1| signal recognition particle 54 kD protein, putative [Ricinus
           communis]
 gi|223546562|gb|EEF48060.1| signal recognition particle 54 kD protein, putative [Ricinus
           communis]
          Length = 206

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 82/263 (31%), Gaps = 62/263 (23%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD- 78
             A     +   I  + ++  +D     E+   L +SD+   + +K+  ++  K++  + 
Sbjct: 2   ALAELGGSMSRAIQQMNNASIID-LCLNEIALSLFQSDVQFNLVRKM--QVNIKKFIHNN 58

Query: 79  ---VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
               +     Y +   I   L  L  P    F+ +                         
Sbjct: 59  HYFAAGYDKPYIIQHAIFNELCKLLDPGEPSFARK-----------------------IK 95

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
              G +  +   D FR++  DQL   A   +     S + S        A ++   +  D
Sbjct: 96  KKKGWRPAIVYADAFRASNFDQLMKNAIEATIPRYGSFMESHPVK----AVQKCIKRNSD 151

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           ++IIDT  R    + L+  + +                            + +   F   
Sbjct: 152 LIIIDTTERHTEVASLLKEMRQ----------------------------VSETTAFKQS 183

Query: 256 AGTTGLIMTKMDGTARGGGLIPI 278
                +I+TKM+G A  G  +  
Sbjct: 184 VEVGVVIVTKMNGNAEAGVALSA 206


>gi|254994455|ref|ZP_05276645.1| SRP receptor alpha-subunit [Listeria monocytogenes FSL J2-064]
          Length = 123

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVA 61
             K+  ++ S   K   G + T       I ++++  R++D+   EELE++LI +D+G  
Sbjct: 8   KDKITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDEDFFEELEEILIGADVGFE 67

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
              ++V+ L  +   +++S      DV E+I + L+ +
Sbjct: 68  TVMELVDTLRREVQLRNISDP---KDVQEVIVEKLVEI 102


>gi|167947261|ref|ZP_02534335.1| Signal recognition particle GTPase [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 73

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
          F S + +L + + ++    RL +        E+   L+ +D+ + V +  V+E+  K   
Sbjct: 2  FESLTQRLGKVLDNLRGQGRLSEQNIKDTMREVRMALLEADVALPVVRAFVDEVKAKAMG 61

Query: 77 KDV 79
          ++V
Sbjct: 62 EEV 64


>gi|297787855|ref|XP_002862151.1| hypothetical protein ARALYDRAFT_359800 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297307306|gb|EFH38409.1| hypothetical protein ARALYDRAFT_359800 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 206

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 35/80 (43%)

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            V+ V+D++ GQ A  Q + F         I+T + G A+  G I  V   K P+     
Sbjct: 4   RVVYVMDSSIGQAAFDQAQAFKQCFPRGVAIITNIHGNAKACGAISAVAAAKCPMILAET 63

Query: 292 GEGINDLEPFVAKDFSAVIT 311
           GE   D E F A+ F   + 
Sbjct: 64  GEKREDFEAFEAEAFVRSLL 83


>gi|330862601|emb|CBX72754.1| hypothetical protein YEW_HW34940 [Yersinia enterocolitica W22703]
          Length = 42

 Score = 57.2 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLD 315
           +  I     IP+ ++GVGEGI DL PF A DF   +    D
Sbjct: 2   IFAIADQFGIPIRYIGVGEGIEDLRPFKADDFIEALFARED 42


>gi|303326432|ref|ZP_07356875.1| putative flagellar biosynthesis protein FlhF [Desulfovibrio sp.
           3_1_syn3]
 gi|302864348|gb|EFL87279.1| putative flagellar biosynthesis protein FlhF [Desulfovibrio sp.
           3_1_syn3]
          Length = 348

 Score = 56.4 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 15/182 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAG--LKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           V L+VG  G GKT+   + +  +       ++     D  R      L+ WA+ ++  ++
Sbjct: 151 VHLLVGPFGFGKTSTGLRFALHLRKNEPEARIAFINADCLRGNGRLTLRHWAELSNFTYM 210

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +   +        A           + +D  G     ++        + + +       
Sbjct: 211 EAPDRAGMEQALAAAKNARA------VFVDVPGLARGQNLAQWRADMGLDMPETA----- 259

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
                VL         ++    +   G+  L+ TK+D     G ++ +     +PV  L 
Sbjct: 260 --THLVLSPFCDALQTQEFLRRYQSDGSGSLVWTKLDEAVSFGSIVNVACAAGLPVSALS 317

Query: 291 VG 292
            G
Sbjct: 318 FG 319


>gi|309806533|ref|ZP_07700536.1| signal recognition particle domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167076|gb|EFO69252.1| signal recognition particle domain protein [Lactobacillus iners
           LactinV 03V1-b]
          Length = 52

 Score = 56.0 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +M        +  H P +I++VG+ G GKTT +GKL+  +
Sbjct: 1   MMGSDTASIIEAKHIPTIIMMVGLQGTGKTTTVGKLANYL 40


>gi|255026600|ref|ZP_05298586.1| flagellar biosynthesis regulator FlhF [Listeria monocytogenes FSL
           J2-003]
          Length = 77

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 245 ALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAK 304
            +  +    A     G I+TKMD T R G L  ++    +PV ++  G+ I +   F  K
Sbjct: 1   DVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITE-NIFRPK 59

Query: 305 D--FSAVITG 312
               +    G
Sbjct: 60  SRWLAERFVG 69


>gi|229527113|ref|ZP_04416507.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           12129(1)]
 gi|229335344|gb|EEO00827.1| signal recognition particle receptor protein FtsY [Vibrio cholerae
           12129(1)]
          Length = 42

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           +  I    +IP+ ++GVGE I+DL PF  ++F   + 
Sbjct: 2   IFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALF 38


>gi|310815364|ref|YP_003963328.1| urease accessory protein UreG [Ketogulonicigenium vulgare Y25]
 gi|308754099|gb|ADO42028.1| urease accessory protein UreG [Ketogulonicigenium vulgare Y25]
          Length = 430

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 73/198 (36%), Gaps = 35/198 (17%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKIWADRTSAD 168
           G  G GKTT+   L+K++ D  L + +   D +         R   + Q ++    T   
Sbjct: 241 GPVGAGKTTLTATLAKRLKDE-LSLAVITNDIYTQEDAEALMRLQILPQSRVMGVETGGC 299

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
              +     +  LA  A  +A+   +D++II++ G       L A             P 
Sbjct: 300 PHTAIREDASINLAAVAEMRARHPDLDLVIIESGG-----DNLSATFS----------PE 344

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV------TH 282
                + V+D   G+   R  +   A+  +  LI+ K D     G  + ++         
Sbjct: 345 LADVTIYVIDVAAGEEIPR--KGGPAITRSDILIINKTDLAPYVGASLDVMERDATRVRQ 402

Query: 283 KIPVYF--LGVGEGINDL 298
             P  F  L  GEG+ ++
Sbjct: 403 GRPFLFSSLRNGEGVEEI 420


>gi|294508617|ref|YP_003572676.1| flagellar biosynthesis protein FlhF [Salinibacter ruber M8]
 gi|294344946|emb|CBH25724.1| Flagellar biosynthesis protein FlhF [Salinibacter ruber M8]
          Length = 449

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 90/264 (34%), Gaps = 20/264 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRP 111
           L+   +    A  +  +L  +      S +  L+  +++++ + +   + P   D     
Sbjct: 199 LLEDGLRPKTATALFGDLTERGVDPRESPRDELHWALAQVVCRRIQ--TDPLTDDTG--- 253

Query: 112 HVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            VI +VG +G GKT++  KL+   + ++     V+    +  R+A+         R    
Sbjct: 254 -VIALVGPSGAGKTSLALKLAVHDRMLARQDTAVLHLCPEAGRNASYQNPTALYRRFGLP 312

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                   D       A         + ++IDT         L      + R  + L P 
Sbjct: 313 VRSVRTKEDM------AKALRCVGDFEQVLIDT---PPLPMPLSEARPVLRRYRRLLRPL 363

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
               V  V+DAT     + +          T   +T +D     G +   ++   +PV  
Sbjct: 364 PRPDVHFVVDATRALGGIDEATFARLPLRPTAAAVTHLDEVHDWGQVAEWLIHVDLPVQI 423

Query: 289 LGVGEGIND-LEPFVAKDFSAVIT 311
           +  G  + D    F  + F   I 
Sbjct: 424 VSEGPEVPDGARAFSLRWFVEDIM 447


>gi|221635445|ref|YP_002523321.1| GTP-binding signal recognition particle SRP54, G-domain
           [Thermomicrobium roseum DSM 5159]
 gi|221158040|gb|ACM07158.1| GTP-binding signal recognition particle SRP54, G-domain
           [Thermomicrobium roseum DSM 5159]
          Length = 333

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 7/102 (6%)

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           +++IDTAG    +        + I  L+ +       V   L          +    +A 
Sbjct: 208 LVLIDTAGANPFDP-------RAIAALEGVLASEHVIVALTLSVGGDLEETLEAARRYAP 260

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIND 297
                LI+TK+D T R G  + +      P+  L  G  I D
Sbjct: 261 LRPRALILTKLDETRRPGLALGLAERLARPLLALTTGTRIPD 302


>gi|284041542|ref|YP_003391882.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Conexibacter woesei DSM 14684]
 gi|283945763|gb|ADB48507.1| GTP-binding signal recognition particle SRP54 G-domain protein
           [Conexibacter woesei DSM 14684]
          Length = 710

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 60/191 (31%), Gaps = 18/191 (9%)

Query: 124 KT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVCSEIGSDAAAL 181
           KT    G  +      G  V +A   TF  A    +L                   AA  
Sbjct: 534 KTRCTAGLAAAY--AQGSSVPVACL-TFAPADGGAELTALLKPHGVKVEAVATAEAAAKR 590

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
                 +A      ++++DT      +         + R+   L P     +  V+ AT 
Sbjct: 591 LAALRAEA------LVVLDTPAVSPGDPD------AVARMAAELAPLQLDEIQLVVPATL 638

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG-EGINDLEP 300
                 ++    A    TG+ MT  D T   G ++ +    ++P+ ++  G E    L P
Sbjct: 639 SATVAEELVERLAPLQPTGIAMTHADATDHIGAVVDLACATRLPLAYVNSGLELPGALAP 698

Query: 301 FVAKDFSAVIT 311
                 +  + 
Sbjct: 699 ADPAQLAERLL 709


>gi|255023713|ref|ZP_05295699.1| signal recognition particle protein [Listeria monocytogenes FSL
          J1-208]
          Length = 80

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 20 GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F   + +L+E +  I    ++++     +  E+   L+ +D+   V ++ ++ +  +  
Sbjct: 2  AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAV 61

Query: 76 AKDV-----SVQRVLYDVS 89
            DV       Q+V+  V 
Sbjct: 62 GADVMKSLTPGQQVIKIVQ 80


>gi|281207982|gb|EFA82160.1| ARF/SAR superfamily protein [Polysphondylium pallidum PN500]
          Length = 547

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 32/176 (18%)

Query: 44  GVREELEDLLIRSDIGVAV------------AQKIVEELLTKRYAKDVSVQRVLYDVSEL 91
           G++E L  L +++D G+AV            A+ +   L  KR    V     +   + L
Sbjct: 243 GMKEGLWSLFVQNDFGIAVSDLTTMVRLNSGARSLYANLYFKRRNSIVP----VRSPNPL 298

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           I   L P+SK     FS + + IL+ G++GVGKTT++ K ++             G+  R
Sbjct: 299 IRFFLKPISK-LPSLFSRKEYKILMYGLDGVGKTTLLYKFAR-------------GEFVR 344

Query: 152 SAAIDQLKI-WADRTSADFVCSEI-GSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           +   +   +   +  S DF+C +I  + +  +        Q  +  + IID+  R 
Sbjct: 345 TLPTNGYNVEVVEYKSCDFICWDIGYNTSKPVVPVWHHYIQDTQALIFIIDSTDRT 400


>gi|83815021|ref|YP_446681.1| hypothetical protein SRU_2583 [Salinibacter ruber DSM 13855]
 gi|83756415|gb|ABC44528.1| hypothetical protein SRU_2583 [Salinibacter ruber DSM 13855]
          Length = 449

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 89/261 (34%), Gaps = 20/261 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRP 111
           L+   +    A  +  +L  +      S +  L+  +++++ + +   + P   D     
Sbjct: 199 LLEDGLRPKTATALFGDLTERGVDPRESPRDELHWALAQVVCRRIQ--TDPLTDDTG--- 253

Query: 112 HVILVVGVNGVGKTTVIGKLS---KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            VI +VG +G GKT++  KL+   + ++     V+    +  R+A+         R    
Sbjct: 254 -VIALVGPSGAGKTSLALKLAVHDRMLARQDTAVLHLCPEAGRNASYQNPTALYRRFGLP 312

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                   D       A         + ++IDT         L      + R  + L P 
Sbjct: 313 VRSVRTKEDM------AKALRCVGDFEQVLIDT---PPLPMPLSEARPVLRRYRRLLRPL 363

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
               V  V+DAT     + +          T   +T +D     G +   ++   +PV  
Sbjct: 364 PRPDVHFVVDATRALGGIDEATFARLPLRPTAAAVTHLDEVHDWGQVAEWLIHVDLPVQI 423

Query: 289 LGVGEGIND-LEPFVAKDFSA 308
           +  G  + D    F  + F  
Sbjct: 424 VSEGPEVPDGARAFSLRWFVE 444


>gi|332346515|gb|AEE59848.1| plasmid partitioning protein ParA [Escherichia coli UMNK88]
          Length = 238

 Score = 52.2 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I VVG N  G GKTT+   L+  +++ G +V L  GD  R+AA    K  A+R +A  + 
Sbjct: 26  ITVVGGNKGGSGKTTIASNLAIALANKGREVCLLNGDLQRTAA----KHHAEREAAGLLP 81

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           +    +      +  + A  +K D +I+D AGR    
Sbjct: 82  AITLVEKFDNLTQTLQ-ALNEKFDDVIVDVAGRNSKE 117


>gi|270642954|ref|ZP_06222135.1| signal recognition particle protein [Haemophilus influenzae HK1212]
 gi|270317326|gb|EFA28870.1| signal recognition particle protein [Haemophilus influenzae HK1212]
          Length = 145

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 287 YFLGVGEGINDLEPFVAKDFSAVITGCLD 315
            FLGVGE    LEPF     ++ I G  D
Sbjct: 1   KFLGVGEKTEALEPFHPDRVASRILGMGD 29


>gi|195350830|ref|XP_002041941.1| GM11265 [Drosophila sechellia]
 gi|194123746|gb|EDW45789.1| GM11265 [Drosophila sechellia]
          Length = 2214

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 22/137 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSD 57
           S++  A E +    +  KG       L      I+ ++ +         E++ D LI  +
Sbjct: 278 SSEGEAEEQV----QSKKG---KRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISKN 330

Query: 58  IGVAVAQKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMP------LSKPFNWD 106
           +   +A K+ + +      K     D    +V   ++E + ++L P      +       
Sbjct: 331 VASEIAAKLCDSVAAILDGKQMGTFDSIANQVKEALTESLVRILSPKRRIDIIRDALESK 390

Query: 107 FSHRPHVILVVGVNGVG 123
            + RP+ I+  GVNGVG
Sbjct: 391 RNGRPYTIIFCGVNGVG 407


>gi|58000330|ref|YP_190184.1| putative plasmid partitioning protein [Escherichia coli]
 gi|168758403|ref|ZP_02783410.1| ParA [Escherichia coli O157:H7 str. EC4401]
 gi|168770700|ref|ZP_02795707.1| ParA [Escherichia coli O157:H7 str. EC4486]
 gi|301646993|ref|ZP_07246829.1| partitioning protein, ParA-family protein [Escherichia coli MS
           146-1]
 gi|57903230|gb|AAW58860.1| putative plasmid partitioning protein [Escherichia coli]
 gi|189354767|gb|EDU73186.1| ParA [Escherichia coli O157:H7 str. EC4401]
 gi|189360440|gb|EDU78859.1| ParA [Escherichia coli O157:H7 str. EC4486]
 gi|301074838|gb|EFK89644.1| partitioning protein, ParA-family protein [Escherichia coli MS
           146-1]
          Length = 214

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I VVG N  G GKTT+   L+  +++ G +V L  GD  R+AA    K  A+R +A  + 
Sbjct: 2   ITVVGGNKGGSGKTTIASNLAIALANKGREVCLLNGDLQRTAA----KHHAEREAAGLLP 57

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           +    +      +  + A  +K D +I+D AGR    
Sbjct: 58  AITLVEKFDNLTQTLQ-ALNEKFDDVIVDVAGRNSKE 93


>gi|297852672|ref|XP_002894217.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297340059|gb|EFH70476.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 241

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 107/262 (40%), Gaps = 35/262 (13%)

Query: 24  TSLKLKEGITDIISSRRLDDGVRE----ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
            S ++   +  +  +  LD+   +    ++   L+ +D+   +    +E  + K     +
Sbjct: 7   LSDQISHSMQRMCKATVLDEITMKICLIKISRALLDADVATVLVNN-MERNIQKYINTFL 65

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN---GVGKTTVIGKLSKKMS 136
              +     SE   ++     + +N D+    ++IL    +   G GK     +  +K+ 
Sbjct: 66  LDAKTEKSFSEESQQI-----QAWNCDYKRVQYMILEKATDSRKGSGK-----QPIQKLR 115

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               +VM       R AA ++L    D   ++     +G + A +A +  ++ + +  D+
Sbjct: 116 LNFQRVMC------RVAAFNELCKMLDPGKSEL-ACYLGLNPAKVARQGIEKFRKENRDL 168

Query: 197 LIIDTAGRL-HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           +I+DT  R  H ++ L   + ++ +++K         V+ V+D+  GQ A  Q   F   
Sbjct: 169 IIVDTNSRHNHYSTSLFEEMSQIAKIMKP-------DVVLVMDSRIGQAASAQA--FKES 219

Query: 256 AGTTGLIMTKMDGTARGGGLIP 277
                +I+T + G  +  G + 
Sbjct: 220 FHDGSVILTNIRGNTKATGALS 241


>gi|10955419|ref|NP_053131.1| hypothetical protein pB171_069 [Escherichia coli]
 gi|91206306|ref|YP_538660.1| hypothetical protein UTI89_P061 [Escherichia coli UTI89]
 gi|116006840|ref|YP_788023.1| plasmid partitioning protein [Escherichia coli]
 gi|190014956|ref|YP_001965468.1| Putative partitioning protein [Escherichia coli]
 gi|191174405|ref|ZP_03035909.1| plasmid stability protein ParA [Escherichia coli F11]
 gi|194430311|ref|ZP_03062804.1| ParA [Escherichia coli B171]
 gi|215276273|ref|YP_002332236.1| ParA-like protein, putative partitioning protein [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218511242|ref|YP_002415700.1| putative plasmid partitioning protein [Escherichia coli 55989]
 gi|218692930|ref|YP_002406042.1| hypothetical protein p1ECUMN_0152 [Escherichia coli UMN026]
 gi|256026285|ref|ZP_05440150.1| hypothetical protein E4_23141 [Escherichia sp. 4_1_40B]
 gi|256855304|ref|YP_003162548.1| hypothetical protein pEC14_55 [Escherichia coli]
 gi|293404647|ref|ZP_06648640.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|300897134|ref|ZP_07115591.1| partitioning protein, ParA-family protein [Escherichia coli MS
           198-1]
 gi|6009445|dbj|BAA84904.1| orf69 [Escherichia coli]
 gi|91075757|gb|ABE10637.1| hypothetical protein UTI89_P061 [Escherichia coli UTI89]
 gi|109389677|gb|ABG29596.1| Putative partitioning protein [Escherichia coli]
 gi|115500695|dbj|BAF33926.1| plasmid partitioning protein [Escherichia coli]
 gi|190905338|gb|EDV64973.1| plasmid stability protein ParA [Escherichia coli F11]
 gi|194411641|gb|EDX27970.1| ParA [Escherichia coli B171]
 gi|215267869|emb|CAS07539.1| ParA-like protein, putative partitioning protein [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218350093|emb|CAQ87512.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|218359343|emb|CAU95829.1| putative plasmid partitioning protein [Escherichia coli 55989]
 gi|256275516|gb|ACU68789.1| conserved hypothetical protein [Escherichia coli]
 gi|281181670|dbj|BAI57999.1| ParA protein [Escherichia coli SE15]
 gi|291428359|gb|EFF01385.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|300359076|gb|EFJ74946.1| partitioning protein, ParA-family protein [Escherichia coli MS
           198-1]
 gi|307629857|gb|ADN74160.1| hypothetical protein UM146_24431 [Escherichia coli UM146]
 gi|315290867|gb|EFU50236.1| partitioning protein, ParA-family protein [Escherichia coli MS
           153-1]
 gi|323954212|gb|EGB50000.1| hypothetical protein ERLG_04487 [Escherichia coli H263]
 gi|324005324|gb|EGB74543.1| partitioning protein, ParA-family protein [Escherichia coli MS
           57-2]
 gi|324015229|gb|EGB84448.1| partitioning protein, ParA-family protein [Escherichia coli MS
           60-1]
 gi|332084726|gb|EGI89913.1| plasmid partitioning protein [Shigella boydii 3594-74]
 gi|332084759|gb|EGI89944.1| plasmid partitioning protein [Shigella boydii 3594-74]
          Length = 214

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I VVG N  G GKTT+   L+  +++ G +V L  GD  R+AA    K  A+R +A  + 
Sbjct: 2   ITVVGGNKGGSGKTTIASNLAIALANKGREVCLLNGDLQRTAA----KHHAEREAAGLLP 57

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           +    +      +  + A  +K D +I+D AGR    
Sbjct: 58  AITLVEKFDNLTQTLQ-ALNEKFDDVIVDVAGRNSKE 93


>gi|312964750|ref|ZP_07778991.1| plasmid partitioning protein [Escherichia coli 2362-75]
 gi|312290599|gb|EFR18478.1| plasmid partitioning protein [Escherichia coli 2362-75]
          Length = 150

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I VVG N  G GKTT+   L+  +++ G +V L  GD  R+AA    K  A+R +A  + 
Sbjct: 2   ITVVGGNKGGSGKTTIASNLAIALANKGREVCLLNGDLQRTAA----KHHAEREAAGLLP 57

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           +    +      +  + A  +K D +I+D AGR    
Sbjct: 58  AITLVEKFDNLTQTLQ-ALNEKFDDVIVDVAGRNSKE 93


>gi|5802945|gb|AAD51849.1|AF178758_5 ArsA [Bacillus sp. CDB3]
          Length = 587

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 66/180 (36%), Gaps = 16/180 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E +  ++  + +    +L ++ E I   + PL             VI  +G  GVGKTT
Sbjct: 289 IENM--RKLVRPIESLSILDEIQEEIA--IPPLQNLIADLSETGKRVIFTMGKGGVGKTT 344

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           V   ++  +++ G +V L   D    AA     +  ++ +      +   +      E  
Sbjct: 345 VASAIAVGLAEKGHRVHLTTTD---PAAHIDYVMHGEQGNITISRIDPKVEVENYRKEVI 401

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +QA+        +D  G  +    L         + R L  +   A   ++ +  A TG 
Sbjct: 402 EQAKDT------VDEEGLAYLEEDLRSPCTEEIAVFRALADIVEIANDEIVVIDTAPTGH 455


>gi|229115368|ref|ZP_04244776.1| Arsenite-translocating ATPase ArsA [Bacillus cereus Rock1-3]
 gi|228668088|gb|EEL23522.1| Arsenite-translocating ATPase ArsA [Bacillus cereus Rock1-3]
          Length = 586

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 13/175 (7%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKL 131
           +   K V     L   +E  + + +P  +    +FS     VI  +G  GVGKTTV   +
Sbjct: 290 ENMRKLVQPMENLSIANEEANAVSIPSLQTLITNFSESEKRVIFTMGKGGVGKTTVASAI 349

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +++ G  V L   D    AA     +  ++ +      +   +      E  +QA+ 
Sbjct: 350 AVGLAEKGHHVHLTTTD---PAAHIDYVMHGEQGNITISRIDPKVEVENYRKEVIEQAKD 406

Query: 192 KKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                  +D  G  +    L         + R L  +   A   ++ +  A TG 
Sbjct: 407 T------VDEEGLAYLEEDLRSPCTEEIAVFRALADIVERANDEIVVIDTAPTGH 455


>gi|257487160|ref|ZP_05641201.1| signal recognition particle protein Ffh [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 53

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           D +R AAI QL+  A+     F  S+I      +A  A K+A+ K +DV+
Sbjct: 4   DVYRPAAIKQLETLANDIGVTFFASDISQKPVDIALAAIKEARLKFIDVV 53


>gi|115733185|ref|XP_794427.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115959969|ref|XP_001182274.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 42

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 273 GGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVIT 311
           G  I +  T   P+ F+G G+   DL     +     + 
Sbjct: 2   GAAISMTYTTGQPIVFVGTGQTYRDLRNLNVQAVVNALL 40


>gi|119503680|ref|ZP_01625763.1| GTP-binding signal recognition particle SRP54 [marine gamma
           proteobacterium HTCC2080]
 gi|119460742|gb|EAW41834.1| GTP-binding signal recognition particle SRP54 [marine gamma
           proteobacterium HTCC2080]
          Length = 367

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 97/284 (34%), Gaps = 44/284 (15%)

Query: 13  WIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD---IGVAVAQKI--- 66
            + +L +  AS    L++ +      RR  D            +    +  AVAQ++   
Sbjct: 72  QLAQLKRELASLRETLQQAL----GERRWQD-----------TAGARPVAAAVAQRLATL 116

Query: 67  -VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            +  +L    A  V+    L    + + + LM      + +      +  ++G +G GKT
Sbjct: 117 GLGRVLAGELADRVAHVDGLNAAWQQVTQHLMTALNSLSSEELCGFRIKAIIGGSGSGKT 176

Query: 126 TVIGKLSKKMSDAGL-----KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
                 +   +  G        ++  GD  R  A+ QL   A R +     +    + A 
Sbjct: 177 QTAA--ALMQASMGYLSSEQIALVHCGDPSRDTALSQL---ATRLNVKQYSARSHDELAE 231

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
            A    + A+      +IIDT             +  + R    L           L AT
Sbjct: 232 -ALSGCRWARE-----IIIDTPALSPALGSQDPVLTLLSRQRGGLAA------FVALPAT 279

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
              + LR++          G+I TK+D     G +I  VV  ++
Sbjct: 280 ASSDHLREILDHCCHLPLAGVITTKVDEATSLGAVIDAVVASEL 323


>gi|124263075|ref|YP_001023545.1| putative transport system kinase [Methylibium petroleiphilum PM1]
 gi|124262321|gb|ABM97310.1| putative transport system kinase [Methylibium petroleiphilum PM1]
          Length = 327

 Score = 50.2 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 71/212 (33%), Gaps = 43/212 (20%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADR 164
           HVI + GV G GK+T++ KL+  +   G KV + A D        AI      +   A+ 
Sbjct: 50  HVIGLTGVPGSGKSTLVAKLTAALRKRGEKVGIVAIDPSSPYSGGAILGDRIRMTELAND 109

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQA---KKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           +               +A  A              +I++T G   +              
Sbjct: 110 SGVFIRSMATRGATGGMARAALDAVDLLDVAGYHTIILETVGVGQDEVE----------- 158

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMDGTA---------- 270
                 HA  + + V     G + ++ ++     +A     +++K D             
Sbjct: 159 ----VAHASDTTVVVSAPGLG-DEIQAIKAGVLEIADIH--VVSKCDRDDANRTLTDLKQ 211

Query: 271 --RGGGLIPIVVTHKIPVYFLG--VGEGINDL 298
               G ++       IPV  +    GEG++DL
Sbjct: 212 MLTLGTMVGPKRAWAIPVVGVSSYTGEGVDDL 243


>gi|118465597|ref|YP_880138.1| LAO/AO transport system ATPase [Mycobacterium avium 104]
 gi|254773762|ref|ZP_05215278.1| LAO/AO transport system ATPase [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|118166884|gb|ABK67781.1| LAO/AO transport system ATPase [Mycobacterium avium 104]
          Length = 295

 Score = 49.9 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 75/251 (29%), Gaps = 45/251 (17%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           + EL+ +           L  + E   +    +             VI + G  G GK+T
Sbjct: 3   IGELIDRARNGSPRAAGRLLSLVE--GEQRDEVLTAIGPAPRDTGPVIGITGPPGAGKST 60

Query: 127 VIGKLSKKMSDAGLKVMLAA-------------GDTFRSAAIDQLKIWADRTSADFVCSE 173
            +  L       G +V + A             GD  R AA        + +        
Sbjct: 61  TVAALVGAYRRRGCRVAVLAVDPSSPFSGGALLGDRIRMAA------HINDSDVLIRSVA 114

Query: 174 IGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                  LA     A +   A   DV++++T G   +           I +    DP   
Sbjct: 115 TRGHLGGLAAAVPAAIRLLAAIGYDVVLLETVGVGQSE----------IEIAAVADPT-- 162

Query: 231 HSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                V+      +A++  +     VA    + + K D       +  +      P+  L
Sbjct: 163 ----VVILNPGAGDAVQAAKAGVLEVADI--VAVNKADRDGAEQTVRDLRAETSAPIVSL 216

Query: 290 --GVGEGINDL 298
               GEGI DL
Sbjct: 217 IAARGEGIEDL 227


>gi|41406785|ref|NP_959621.1| hypothetical protein MAP0687 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395135|gb|AAS03004.1| hypothetical protein MAP_0687 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 295

 Score = 49.9 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 75/251 (29%), Gaps = 45/251 (17%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           + EL+ +           L  + E   +    +             VI + G  G GK+T
Sbjct: 3   IGELIDRARNGSPRAAGRLLSLVE--GERRDEVLTAIGPAPRDTGPVIGITGPPGAGKST 60

Query: 127 VIGKLSKKMSDAGLKVMLAA-------------GDTFRSAAIDQLKIWADRTSADFVCSE 173
            +  L       G +V + A             GD  R AA        + +        
Sbjct: 61  TVAALVGAYRRRGCRVAVLAVDPSSPFSGGALLGDRIRMAA------HINDSDVLIRSVA 114

Query: 174 IGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                  LA     A +   A   DV++++T G   +           I +    DP   
Sbjct: 115 TRGHLGGLAAAVPAAIRLLAAIGYDVVLLETVGVGQSE----------IEIAAVADPT-- 162

Query: 231 HSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
                V+      +A++  +     VA    + + K D       +  +      P+  L
Sbjct: 163 ----VVILNPGAGDAVQAAKAGVLEVADI--VAVNKADRDGAEQTVRDLRAETSAPIVSL 216

Query: 290 --GVGEGINDL 298
               GEGI DL
Sbjct: 217 IAARGEGIEDL 227


>gi|90415331|ref|ZP_01223265.1| flagellar biosynthesis protein FlhF [marine gamma proteobacterium
           HTCC2207]
 gi|90332654|gb|EAS47824.1| flagellar biosynthesis protein FlhF [marine gamma proteobacterium
           HTCC2207]
          Length = 433

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 24/179 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG--DTFRSAAIDQLKIWADRTSADFV 170
           V ++ G +G GKT + G+L+K+M+    +  +A    D  R  A  Q ++   +   D  
Sbjct: 244 VHIIAGNSGAGKTMMAGRLAKQMAHQYGENTVALISFDDLRIGAWAQAQLIGTQAGVDTF 303

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +        L  +           +++IDT+G           I   I  L    P A 
Sbjct: 304 RATSIEVLLQLIGD------LSSRKLILIDTSG---------VNIESHINSLSEALPQAK 348

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGT--TGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
             +L   DA+         +            +++++ D       +I +++ H  P+ 
Sbjct: 349 KHLLLAADASE-----ASAKRQFKGDDVRWDSVMLSRFDSDVHPWAIIYLLLQHSTPIS 402


>gi|225449877|ref|XP_002267622.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1428

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 31/153 (20%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           ++S+ +K+ +     + +L     D I+ RRLD  +RE++  +L     G+       E 
Sbjct: 225 AMSFNKKMGEKIKKITREL-----DAIAKRRLDLHLREDVGGVL----FGIE------ER 269

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L T     +  +     D  ++I  ML   +   N     R  VI +VG+ GVGKTT   
Sbjct: 270 LQTTSLVDESRIHGRDADKEKIIELMLSDEAAEVN-----RVSVISIVGMGGVGKTT--- 321

Query: 130 KLSKKMSDAGL-------KVMLAAGDTFRSAAI 155
            L++ + + G        +V +   D F  A I
Sbjct: 322 -LAQIIYNDGRVENRFDMRVWVCVSDDFDVAGI 353


>gi|229089007|ref|ZP_04220366.1| Arsenite-translocating ATPase ArsA [Bacillus cereus Rock3-44]
 gi|228694303|gb|EEL47920.1| Arsenite-translocating ATPase ArsA [Bacillus cereus Rock3-44]
          Length = 586

 Score = 49.1 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 13/175 (7%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKL 131
           +   K V     +    E    + MP  +    + S     VI  +G  GVGKTTV   +
Sbjct: 290 ENMRKLVKPMENILISDEEKQGISMPSLQALITNLSETGKKVIFTMGKGGVGKTTVASAI 349

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +++ G  V L   D    AA     +  ++ +      +   +      E  +QA+ 
Sbjct: 350 AVGLAEKGHHVHLTTTD---PAAHIDYVMHGEQGNITISRIDPKVEVENYRKEVIEQAKE 406

Query: 192 KKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                  +D  G  +    L         + R L  +   A   ++ +  A TG 
Sbjct: 407 T------VDEEGLAYLEEDLRSPCTEEIAVFRALADIVEKANDEIVVIDTAPTGH 455


>gi|229164587|ref|ZP_04292481.1| Arsenite-translocating ATPase ArsA [Bacillus cereus R309803]
 gi|228618903|gb|EEK75835.1| Arsenite-translocating ATPase ArsA [Bacillus cereus R309803]
          Length = 587

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 74/211 (35%), Gaps = 30/211 (14%)

Query: 43  DGVREELEDL------LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
           + + EEL+DL      L    +   V    +E +      K V     L    E  H + 
Sbjct: 265 ENMTEELKDLPAYEIPL----VPFNVTG--IENMR-----KLVQPIENLSISDEEQHNVS 313

Query: 97  MPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           +P  +    D S     VI  +G  GVGKTTV   ++  +++ G  V L   D    AA 
Sbjct: 314 IPPLQNLITDLSKTGKRVIFTMGKGGVGKTTVASAIAVGLAEKGHHVHLTTTD---PAAH 370

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---M 212
               +  ++ +      +   +      E  +QA+        +D  G  +    L    
Sbjct: 371 IDYVMHGEQGNITISRIDPKLEVENYRKEVIEQAKDT------VDEEGLAYLEEDLRSPC 424

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                + R L  +   A   ++ +  A TG 
Sbjct: 425 TEEIAVFRALADIVEKANDEIVVIDTAPTGH 455


>gi|47459449|ref|YP_016311.1| putative ATPase/GTPase [Mycoplasma mobile 163K]
 gi|47458779|gb|AAT28100.1| putative ATPase/GTPase [Mycoplasma mobile 163K]
          Length = 632

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 67/185 (36%), Gaps = 40/185 (21%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGV--REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           +STS    + +  I +     D +   ++LE            +Q  +  L  +     +
Sbjct: 185 SSTSNIFVDYLKSIFNKPISHDDLVKLDKLE---------YKPSQNFISHLKEEFKNIKL 235

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK-LSKKMSDA 138
           S  + L   S         L + F   F  + HV+ + G  G GKT +  K L   MS+ 
Sbjct: 236 SSSQCLAFYS---------LKETFLKSFETKKHVVFISGAAGSGKTVIAFKLLGYIMSNH 286

Query: 139 GLKVM-LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              V  +  G  FR+AA  QLK   +    +F+                      K DV+
Sbjct: 287 NKSVKLMLPGPEFRAAAKSQLK---NNNLVEFIGGADMHA---------------KHDVV 328

Query: 198 IIDTA 202
           IID A
Sbjct: 329 IIDEA 333


>gi|229093535|ref|ZP_04224637.1| Arsenite-translocating ATPase ArsA [Bacillus cereus Rock3-42]
 gi|228689865|gb|EEL43670.1| Arsenite-translocating ATPase ArsA [Bacillus cereus Rock3-42]
          Length = 587

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 74/211 (35%), Gaps = 30/211 (14%)

Query: 43  DGVREELEDL------LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
           + + EEL+DL      L    +   V    +E +      K V     L    E  H + 
Sbjct: 265 ENMTEELKDLPAYEIPL----VPFNVTG--IENMR-----KLVQPIENLSISDEEQHNVS 313

Query: 97  MPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           +P  +    D S     VI  +G  GVGKTTV   ++  +++ G  V L   D    AA 
Sbjct: 314 IPPLQNLITDLSKTGKRVIFTMGKGGVGKTTVASAIAVGLAEKGHHVHLTTTD---PAAH 370

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---M 212
               +  ++ +      +   +      E  +QA+        +D  G  +    L    
Sbjct: 371 IDYVMHGEQGNITISRIDPKLEVENYRKEVIEQAKDT------VDEEGLAYLEEDLRSPC 424

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                + R L  +   A   ++ +  A TG 
Sbjct: 425 TEEIAVFRALADIVEKANDEIVVIDTAPTGH 455


>gi|332297614|ref|YP_004439536.1| phosphoribulokinase/uridine kinase [Treponema brennaborense DSM
           12168]
 gi|332180717|gb|AEE16405.1| phosphoribulokinase/uridine kinase [Treponema brennaborense DSM
           12168]
          Length = 550

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 20/89 (22%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
                ++         ++  Q+ + D+++ I                    VIL+ G + 
Sbjct: 256 TVNDFIDT-------AEIFQQKCIADIADRIRD-------------RGNVKVILIAGPSS 295

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            GKTT   KLS ++   G +  +   DT+
Sbjct: 296 SGKTTTSKKLSLQLKALGYRPKIIELDTY 324


>gi|229196247|ref|ZP_04322995.1| Arsenite-translocating ATPase ArsA [Bacillus cereus m1293]
 gi|228587101|gb|EEK45171.1| Arsenite-translocating ATPase ArsA [Bacillus cereus m1293]
          Length = 586

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 13/175 (7%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKL 131
           +   K V     L    E  + + +P  +    + S     VI  +G  GVGKTTV   +
Sbjct: 290 ENMRKLVQPMENLSISDEETNTVSIPSLQTLITNLSESGKRVIFTMGKGGVGKTTVASAI 349

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +++ G  V L   D    AA     +  ++ +      +   +      E  +QA+ 
Sbjct: 350 AVGLAEKGHHVHLTTTD---PAAHIDYVMHGEQGNITISRIDPKVEVENYRKEVIEQAKD 406

Query: 192 KKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                  +D  G  +    L         + R L  +   A   ++ +  A TG 
Sbjct: 407 T------VDEEGLAYLEEDLRSPCTEEIAVFRALADIVERANDEIVVIDTAPTGH 455


>gi|206975105|ref|ZP_03236019.1| arsenical pump-driving ATPase [Bacillus cereus H3081.97]
 gi|206746526|gb|EDZ57919.1| arsenical pump-driving ATPase [Bacillus cereus H3081.97]
          Length = 586

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 13/175 (7%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKL 131
           +   K V     L    E  + + +P  +    + S     VI  +G  GVGKTTV   +
Sbjct: 290 ENMRKLVQPMENLSISDEETNTVSIPSLQTLITNLSESGKRVIFTMGKGGVGKTTVASAI 349

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +++ G  V L   D    AA     +  ++ +      +   +      E  +QA+ 
Sbjct: 350 AVGLAEKGHHVHLTTTD---PAAHIDYVMHGEQGNITISRIDPKVEVENYRKEVIEQAKD 406

Query: 192 KKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                  +D  G  +    L         + R L  +   A   ++ +  A TG 
Sbjct: 407 T------VDEEGLAYLEEDLRSPCTEEIAVFRALADIVERANDEIVVIDTAPTGH 455


>gi|299783403|gb|ADJ41401.1| Signal recognition particle receptor [Lactobacillus fermentum CECT
           5716]
          Length = 248

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
           +K  +G   +       +   +++ R +D+   ++LED+LI SD+G  +A K+ + L  +
Sbjct: 139 KKYDQGLEKSRNGFGARLNRFLANFRHVDEDFFDDLEDMLIESDVGYEMAMKLSDSLREE 198

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
              ++    +   DVS +I + ++ L        ++ P
Sbjct: 199 VRLQN---AKNKQDVSNVIIEKMVBLYDEAGAGGTNYP 233


>gi|229100400|ref|ZP_04231271.1| Arsenite-translocating ATPase ArsA [Bacillus cereus Rock3-29]
 gi|228683020|gb|EEL37027.1| Arsenite-translocating ATPase ArsA [Bacillus cereus Rock3-29]
          Length = 586

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 13/175 (7%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKL 131
           +   K V     L    E  + + +P  +    + S     VI  +G  GVGKTTV   +
Sbjct: 290 ENMRKLVQPMENLSISDEEANTVSIPSLQTLITNLSESGKRVIFTMGKGGVGKTTVASAI 349

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +++ G  V L   D    AA     +  ++ +      +   +      E  +QA+ 
Sbjct: 350 AVGLAEKGHHVHLTTTD---PAAHIDYVMHGEQGNITISRIDPKVEVENYRKEVIEQAKD 406

Query: 192 KKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                  +D  G  +    L         + R L  +   A   ++ +  A TG 
Sbjct: 407 T------VDEEGLAYLEEDLRSPCTEEIAVFRALADIVERANDEIVVIDTAPTGH 455


>gi|330791563|ref|XP_003283862.1| hypothetical protein DICPUDRAFT_147576 [Dictyostelium purpureum]
 gi|325086248|gb|EGC39641.1| hypothetical protein DICPUDRAFT_147576 [Dictyostelium purpureum]
          Length = 412

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 37/220 (16%)

Query: 44  GVREELEDLLIRSDIGVAV------------AQKIVEELLTKRYAKDVSVQRVLYDVSEL 91
           G+ E+L    +  D  V +             + +   L  KR    +         + L
Sbjct: 156 GMNEKLWLYFVEKDFNVDIHEIHQLIRLNGGVRSLYANLYFKRKNSIIKPSSP----NPL 211

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           I   L P+SK  N  F+ R    L+ G++GVGKTT++ K ++             G+  R
Sbjct: 212 IKYFLKPISKLPNL-FTRREFKTLMYGLDGVGKTTMLYKFAR-------------GENVR 257

Query: 152 SAAIDQLKI-WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS- 209
           +   +   +   +  S DF+C +IG +   +        Q  +  + IID+  R+     
Sbjct: 258 TLHTNGYNVEVVEYKSCDFICWDIGFEQNPIVPVWHHYLQDTQAIIFIIDSTDRVRIRQV 317

Query: 210 -----ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                 L+        V     P+  H  ++VL      +
Sbjct: 318 REEFWKLVTDKNVEKIVNNFKPPNQEHYKVKVLVYLNKLD 357


>gi|85706770|ref|ZP_01037862.1| signal recognition particle protein [Roseovarius sp. 217]
 gi|85668828|gb|EAQ23697.1| signal recognition particle protein [Roseovarius sp. 217]
          Length = 78

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 21 FASTSLKLKEGITDIISSRRLDDG----VREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
          F + S +L      +     L +        E+   L+ +D+ + VA+  ++ + ++   
Sbjct: 2  FENLSERLSGVFDRLTKQGALSEEDVKTALREVRVALLEADVSLPVARDFIKTVESRATG 61

Query: 77 KDVS 80
          + V+
Sbjct: 62 QAVT 65


>gi|254820488|ref|ZP_05225489.1| hypothetical protein MintA_11196 [Mycobacterium intracellulare ATCC
           13950]
          Length = 295

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 77/252 (30%), Gaps = 45/252 (17%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           I+ EL+ +           L  + E   +    +             VI + G  G GK+
Sbjct: 2   IIAELIDRARNGSPRAAGRLLSLVE--GEQRDEVLAAIGPAPERVGPVIGITGPPGAGKS 59

Query: 126 TVIGKLSKKMSDAGLKVMLAA-------------GDTFRSAAIDQLKIWADRTSADFVCS 172
           T +  L       G +V + A             GD  R AA        + +       
Sbjct: 60  TTVAALVGAYRARGCRVAVLAVDPSSPFSGGALLGDRIRMAA------HINDSDVLIRSV 113

Query: 173 EIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                   LA     A +   A   DV++++T G   +           I +    DP  
Sbjct: 114 ATRGHLGGLAAAVPAAIRLVGAIGYDVVLLETVGVGQSE----------IEIAAVADPT- 162

Query: 230 PHSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYF 288
                 V+      +A++  +     VA    + + K D       +  +      P+  
Sbjct: 163 -----VVILNPGAGDAVQAAKAGVLEVADI--VAVNKADRDGAKQTVRDLRAETSAPIVS 215

Query: 289 L--GVGEGINDL 298
           L    GEGI++L
Sbjct: 216 LIAAKGEGIDEL 227


>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis]
 gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]
          Length = 2460

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 87/241 (36%), Gaps = 38/241 (15%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVR--EELEDL----LIRSDIGVAV-----AQKIV 67
           +G  S   KLK     +    R+++ +   EE+E++    L  +D  + +      + ++
Sbjct: 36  QGLKSKVEKLKA--EKVSVMHRVEEAIAKGEEIEEIVSKWLTSADEAMKLQRLFSTKIMI 93

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E+      AKD         V E I   L               ++I V G+ GVGKTT+
Sbjct: 94  EQTRKFEVAKDYETFDSRNQVLEEIIGALKDAD----------VNLIGVYGLGGVGKTTL 143

Query: 128 IGKLSKKMSDAGLKVMLAAG------DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           + +++ ++ + G+  ++A        D  +       +  AD     F   E     AA 
Sbjct: 144 LKQVTAQVKETGIFKVVATATVTDNPDLNKIQ-----QDIADWLGLKFDV-ESTQVRAAR 197

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
                KQ +     ++I+D          L    G   +  K L      +VL  +D   
Sbjct: 198 LRARLKQDEKV---LVILDNIWHKIALEELGIPYGNDHKGCKILMTSRNLNVLLAMDVQR 254

Query: 242 G 242
            
Sbjct: 255 H 255


>gi|149184410|ref|ZP_01862728.1| exopolysaccharide biosynthesis protein [Erythrobacter sp. SD-21]
 gi|148831730|gb|EDL50163.1| exopolysaccharide biosynthesis protein [Erythrobacter sp. SD-21]
          Length = 747

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 72/221 (32%), Gaps = 44/221 (19%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVN-GVGKTTVIGKLSKK 134
           +  +    L D    + +    L     +      P  ++V     G GKTT  GKL+ +
Sbjct: 514 QGSNPAEDLEDPKSPVSESYQSLVTNLRYSTGEGIPRTLMVTSAQAGEGKTTSAGKLALE 573

Query: 135 MSDAGLKVMLAAGDTFRSA---------------------AIDQLKIWADRTSADF---- 169
            ++ G K +L   D  R                       AID++ + +   +  +    
Sbjct: 574 FAELGRKTLLIDADLRRPTLHRKLANRDQEGFTTVLAGERAIDEVLVPSGHPNLTYLTAL 633

Query: 170 -VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            +  +  +   ++ ++        + D ++ D         +L       I         
Sbjct: 634 PIPPDPAALLGSMNFDGLIADLLTRFDSVVFDAP------PMLGLSDAPTIAAHT----- 682

Query: 229 APHSVLQVLDATTGQN-ALRQVEMFHAVA--GTTGLIMTKM 266
              +VL V+DA +G   A++       +      G ++TK 
Sbjct: 683 --DAVLIVIDAESGNRGAVKTALSRLNLVKANVIGAVLTKF 721


>gi|171910580|ref|ZP_02926050.1| hypothetical protein VspiD_05390 [Verrucomicrobium spinosum DSM
           4136]
          Length = 386

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           P       +   I++ G  G GKTT IGKL++ ++D GLKV L   D
Sbjct: 6   PTPTSSPTKARYIMIGGFLGAGKTTAIGKLARHLTDQGLKVGLITND 52


>gi|283779196|ref|YP_003369951.1| cobalamin synthesis protein P47K [Pirellula staleyi DSM 6068]
 gi|283437649|gb|ADB16091.1| cobalamin synthesis protein P47K [Pirellula staleyi DSM 6068]
          Length = 399

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +++ G  G GKTT I +L++     GLKV +   D
Sbjct: 38  VMLGGFLGAGKTTTIARLARHYQSQGLKVGIVTND 72


>gi|262042209|ref|ZP_06015381.1| partitioning protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040442|gb|EEW41541.1| partitioning protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 212

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I V+G N  G GKTT    L+  ++  G  V L  GD  R+AA    K  A+R +A+   
Sbjct: 2   ITVIGGNKGGSGKTTTAVNLAIGLALRGKDVCLVNGDLQRTAA----KHLAEREAAEVKP 57

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           +    +      +   +A  +K + +I+D AGR    
Sbjct: 58  TITLIEKFDNLSQTL-RALDEKYEHVIVDVAGRNSRE 93


>gi|205373345|ref|ZP_03226149.1| signal recognition particle protein [Bacillus coahuilensis m4-4]
          Length = 68

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 20 GFASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F   + +L+  I  I    ++ +     +  E+   L+ +D+   V ++ V++L   + 
Sbjct: 2  AFEGLADRLQSSIQKIRGKGKVSEADVKEMMREVRLALLEADVNFKVVKQFVKKLANVQL 61

Query: 76 AKDV 79
           K +
Sbjct: 62 GKRL 65


>gi|44004495|ref|NP_982163.1| arsenite-translocating ATPase ArsA [Bacillus cereus ATCC 10987]
 gi|190014999|ref|YP_001966795.1| arsenite-translocating ATPase ArsA [Bacillus cereus]
 gi|190015266|ref|YP_001967119.1| arsenite-translocating ATPase ArsA [Bacillus cereus]
 gi|218848329|ref|YP_002455188.1| arsenical pump-driving ATPase [Bacillus cereus AH820]
 gi|229113458|ref|ZP_04242908.1| Arsenite-translocating ATPase ArsA [Bacillus cereus Rock1-15]
 gi|229125501|ref|ZP_04254548.1| Arsenite-translocating ATPase ArsA [Bacillus cereus 95/8201]
 gi|229164720|ref|ZP_04292584.1| Arsenite-translocating ATPase ArsA [Bacillus cereus R309803]
 gi|296506576|ref|YP_003667810.1| arsenite-translocating ATPase ArsA [Bacillus thuringiensis BMB171]
 gi|42741561|gb|AAS45006.1| arsenite-translocating ATPase ArsA [Bacillus cereus ATCC 10987]
 gi|116584675|gb|ABK00790.1| arsenite-translocating ATPase ArsA [Bacillus cereus]
 gi|116584947|gb|ABK01056.1| arsenite-translocating ATPase ArsA [Bacillus cereus]
 gi|218540380|gb|ACK92776.1| arsenical pump-driving ATPase [Bacillus cereus AH820]
 gi|228618800|gb|EEK75762.1| Arsenite-translocating ATPase ArsA [Bacillus cereus R309803]
 gi|228657968|gb|EEL13761.1| Arsenite-translocating ATPase ArsA [Bacillus cereus 95/8201]
 gi|228669976|gb|EEL25369.1| Arsenite-translocating ATPase ArsA [Bacillus cereus Rock1-15]
 gi|296327163|gb|ADH10090.1| arsenite-translocating ATPase ArsA [Bacillus thuringiensis BMB171]
          Length = 586

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 13/175 (7%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKL 131
           +   K V     L    E  + + +P  +    + S     VI  +G  GVGKTTV   +
Sbjct: 290 ENMRKLVQPMENLLISDEEANTVSIPSLQTLITNLSESGKRVIFTMGKGGVGKTTVASAI 349

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +++ G  V L   D    AA     +  ++ +      +   +      E  +QA+ 
Sbjct: 350 AVGLAEKGHHVHLTTTD---PAAHIDYVMHGEQGNITVSRIDPKVEVENYRKEVIEQAKD 406

Query: 192 KKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                  +D  G  +    L         + R L  +   A   ++ +  A TG 
Sbjct: 407 T------VDEEGLAYLEEDLRSPCTEEIAVFRALADIVERANDEIVVIDTAPTGH 455


>gi|157134606|ref|XP_001663326.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase short form
           [Aedes aegypti]
 gi|108870424|gb|EAT34649.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase short form
           [Aedes aegypti]
          Length = 525

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNW----------DFSHRPHVILVVGVNGVGKTTVIG 129
            +Q     +SE   KML P ++              ++ + PHVI +VG+   GKT +  
Sbjct: 57  EIQLCPSVMSEDTKKMLPPTTETIQTKPFPIRGERANYVNSPHVIAMVGLPARGKTYISK 116

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KLS+ ++  G+   +     +R  A D  +        + V   I    A +A +   Q 
Sbjct: 117 KLSRYLNWIGINTKVFNLGEYRRHATDAYRSHEFFRPDNEVAMAIRQHCAEMALQDVCQW 176

Query: 190 QAKKVDVLIIDTA 202
                +V + D  
Sbjct: 177 LENGGEVAVFDAT 189


>gi|157134608|ref|XP_001663327.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase short form
           [Aedes aegypti]
 gi|108870425|gb|EAT34650.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase short form
           [Aedes aegypti]
          Length = 528

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNW----------DFSHRPHVILVVGVNGVGKTTVIG 129
            +Q     +SE   KML P ++              ++ + PHVI +VG+   GKT +  
Sbjct: 57  EIQLCPSVMSEDTKKMLPPTTETIQTKPFPIRGERANYVNSPHVIAMVGLPARGKTYISK 116

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KLS+ ++  G+   +     +R  A D  +        + V   I    A +A +   Q 
Sbjct: 117 KLSRYLNWIGINTKVFNLGEYRRHATDAYRSHEFFRPDNEVAMAIRQHCAEMALQDVCQW 176

Query: 190 QAKKVDVLIIDTA 202
                +V + D  
Sbjct: 177 LENGGEVAVFDAT 189


>gi|157134604|ref|XP_001663325.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase short form
           [Aedes aegypti]
 gi|108870423|gb|EAT34648.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase short form
           [Aedes aegypti]
          Length = 535

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNW----------DFSHRPHVILVVGVNGVGKTTVIG 129
            +Q     +SE   KML P ++              ++ + PHVI +VG+   GKT +  
Sbjct: 57  EIQLCPSVMSEDTKKMLPPTTETIQTKPFPIRGERANYVNSPHVIAMVGLPARGKTYISK 116

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KLS+ ++  G+   +     +R  A D  +        + V   I    A +A +   Q 
Sbjct: 117 KLSRYLNWIGINTKVFNLGEYRRHATDAYRSHEFFRPDNEVAMAIRQHCAEMALQDVCQW 176

Query: 190 QAKKVDVLIIDTA 202
                +V + D  
Sbjct: 177 LENGGEVAVFDAT 189


>gi|311898409|dbj|BAJ30817.1| putative transport system kinase [Kitasatospora setae KM-6054]
          Length = 317

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 74/226 (32%), Gaps = 37/226 (16%)

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
            +D+       +VE+    R      +  ++ + +  + +++  L+      +S R + +
Sbjct: 1   MADVAT-----LVEQARQGRPRAVARLITLVENAAPELREVMAALA-----PYSGRAYTV 50

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSA 167
            + G  GVGK+T    L       G +V + A D        A+      ++  A     
Sbjct: 51  GLTGSPGVGKSTSTSALVSAYRRQGRRVGVLAVDPSSPFSGGALLGDRVRMQEHATDPEV 110

Query: 168 DFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                        LA+   +A +       DV++++T G   +                 
Sbjct: 111 FIRSMATRGHLGGLAWAAPQALRVLDGAGCDVILVETVGVGQSEVE-------------- 156

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +   A  SV+ +       + ++  +      G    ++ K D   
Sbjct: 157 IAAQADTSVVLLAPGM--GDGIQAAKAGILEIG-DVFVVNKADRDG 199


>gi|289670363|ref|ZP_06491438.1| signal recognition particle protein [Xanthomonas campestris pv.
          musacearum NCPPB4381]
          Length = 72

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 32 ITDIISSRRL-DDGVRE---ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQ 82
          +  +    RL ++ +RE   E+   L+ +D+ + V Q ++E +  +   ++V       Q
Sbjct: 1  MERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQ 60

Query: 83 RVLYDVSELIH 93
           ++  V + + 
Sbjct: 61 ALIKIVRDELT 71


>gi|228008433|gb|ACP44286.1| MIP03150p [Drosophila melanogaster]
          Length = 536

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 19/141 (13%)

Query: 67  VEELLTKR-YAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSHR------PHVI 114
           + +L      A +  +      +SE + K+L P     ++KPF             PHVI
Sbjct: 18  LNQLKKTADLAIENELHVCPSVMSEELRKLLPPTSETVMTKPFPIRGERTIADCTTPHVI 77

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
            +VG+   GKT +  KL++ ++  G+   +     +R  A    K               
Sbjct: 78  AMVGLPARGKTFISKKLARYLNWIGISTRVFNLGEYRRHATTAYKSHE-------FFRAD 130

Query: 175 GSDAAALAYEAFKQAQAKKVD 195
             +A A+      QA     D
Sbjct: 131 NEEAMAIRNRCANQALHDSCD 151


>gi|24643254|ref|NP_728249.1| 6-phosphofructo-2-kinase, isoform A [Drosophila melanogaster]
 gi|24643256|ref|NP_728250.1| 6-phosphofructo-2-kinase, isoform D [Drosophila melanogaster]
 gi|24643258|ref|NP_728251.1| 6-phosphofructo-2-kinase, isoform E [Drosophila melanogaster]
 gi|24643260|ref|NP_728252.1| 6-phosphofructo-2-kinase, isoform F [Drosophila melanogaster]
 gi|24643262|ref|NP_728253.1| 6-phosphofructo-2-kinase, isoform H [Drosophila melanogaster]
 gi|24643264|ref|NP_728254.1| 6-phosphofructo-2-kinase, isoform I [Drosophila melanogaster]
 gi|22832568|gb|AAN09491.1| 6-phosphofructo-2-kinase, isoform A [Drosophila melanogaster]
 gi|22832569|gb|AAF48963.2| 6-phosphofructo-2-kinase, isoform D [Drosophila melanogaster]
 gi|22832570|gb|AAN09492.1| 6-phosphofructo-2-kinase, isoform E [Drosophila melanogaster]
 gi|22832571|gb|AAN09493.1| 6-phosphofructo-2-kinase, isoform F [Drosophila melanogaster]
 gi|22832572|gb|AAN09494.1| 6-phosphofructo-2-kinase, isoform H [Drosophila melanogaster]
 gi|22832573|gb|AAN09495.1| 6-phosphofructo-2-kinase, isoform I [Drosophila melanogaster]
          Length = 536

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 19/141 (13%)

Query: 67  VEELLTKR-YAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSHR------PHVI 114
           + +L      A +  +      +SE + K+L P     ++KPF             PHVI
Sbjct: 18  LNQLKKTADLAIENELHVCPSVMSEELRKLLPPTSETVMTKPFPIRGERTIADCTTPHVI 77

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
            +VG+   GKT +  KL++ ++  G+   +     +R  A    K               
Sbjct: 78  AMVGLPARGKTFISKKLARYLNWIGISTRVFNLGEYRRHATTAYKSHE-------FFRAD 130

Query: 175 GSDAAALAYEAFKQAQAKKVD 195
             +A A+      QA     D
Sbjct: 131 NEEAMAIRNRCANQALHDSCD 151


>gi|17137706|ref|NP_477451.1| 6-phosphofructo-2-kinase, isoform G [Drosophila melanogaster]
 gi|24643252|ref|NP_477452.3| 6-phosphofructo-2-kinase, isoform B [Drosophila melanogaster]
 gi|5360735|dbj|BAA82137.1| 6-phosphofructo 2-kinase/fructose 2,6-bisphosphatase long form
           [Drosophila melanogaster]
 gi|21483304|gb|AAM52627.1| GH17337p [Drosophila melanogaster]
 gi|22832566|gb|AAF48962.2| 6-phosphofructo-2-kinase, isoform B [Drosophila melanogaster]
 gi|22832567|gb|AAF48970.3| 6-phosphofructo-2-kinase, isoform G [Drosophila melanogaster]
 gi|220946630|gb|ACL85858.1| Pfrx-PA [synthetic construct]
          Length = 716

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 19/141 (13%)

Query: 67  VEELLTKR-YAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSHR------PHVI 114
           + +L      A +  +      +SE + K+L P     ++KPF             PHVI
Sbjct: 198 LNQLKKTADLAIENELHVCPSVMSEELRKLLPPTSETVMTKPFPIRGERTIADCTTPHVI 257

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
            +VG+   GKT +  KL++ ++  G+   +     +R  A    K               
Sbjct: 258 AMVGLPARGKTFISKKLARYLNWIGISTRVFNLGEYRRHATTAYKSHE-------FFRAD 310

Query: 175 GSDAAALAYEAFKQAQAKKVD 195
             +A A+      QA     D
Sbjct: 311 NEEAMAIRNRCANQALHDSCD 331


>gi|294898832|ref|XP_002776397.1| XPA-binding protein, putative [Perkinsus marinus ATCC 50983]
 gi|239883335|gb|EER08213.1| XPA-binding protein, putative [Perkinsus marinus ATCC 50983]
          Length = 382

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 19/188 (10%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-TFRSAAI- 155
           P+         H+P VI+V+G+ G GK+T + +L   ++    +V     D   R+    
Sbjct: 16  PMDGIEKESNGHKPTVIVVIGMAGAGKSTFVHRLYLHLTAQKKRVYSVNLDPAVRNVPYP 75

Query: 156 ------------DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
                       D +K +    +   + S                 +A ++D +I+DT G
Sbjct: 76  TNIDIRDTVKYKDVMKHFGLGPNGAIMTSLNLFATRFDQAMGLIDQRAPELDYVIVDTPG 135

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ----NALRQVEMFHAVAGTT 259
           ++       A    ++  L    P     VL  +  T+      N L    + +     T
Sbjct: 136 QIEV-FNWSASGTIILDSLAMAYPTVTLFVLDTVRCTSPTTFMSNMLYVTSIMYKTKLPT 194

Query: 260 GLIMTKMD 267
             +  K D
Sbjct: 195 VAVFNKCD 202


>gi|168704020|ref|ZP_02736297.1| hypothetical protein GobsU_31089 [Gemmata obscuriglobus UQM 2246]
          Length = 367

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++V G  G GKTT +G+L++     G +V +   D
Sbjct: 6   VMVGGFLGAGKTTTLGRLARHYQQQGKRVGVVTND 40


>gi|289523551|ref|ZP_06440405.1| putative flagellar biosynthetic protein FlhF [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503243|gb|EFD24407.1| putative flagellar biosynthetic protein FlhF [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 237

 Score = 46.8 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 49  LEDLLIRSDIGVA--VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           + + L++  +G    +A +I  E L K   K          + + + + +      F   
Sbjct: 145 ICETLLQ--VGFDPLMAMEIASEYLRKGRNKK---------LDDFLAESISVTGSDFISA 193

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
              +    + VG  GVGKTT I KL+   +    K    +
Sbjct: 194 LGGKRA--MFVGPTGVGKTTTIAKLAAIFALWHQKRYCCS 231


>gi|315230828|ref|YP_004071264.1| hypothetical protein TERMP_01065 [Thermococcus barophilus MP]
 gi|315183856|gb|ADT84041.1| hypothetical protein TERMP_01065 [Thermococcus barophilus MP]
          Length = 247

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 73/236 (30%), Gaps = 53/236 (22%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT------FRSAA-------IDQLK 159
           ++  VG  G GKTT+     K +   G  V     DT      ++          ++++ 
Sbjct: 2   ILTFVGTAGSGKTTITHTFGKYLEKEGYTVGYVNLDTGVKKLPYKPNIDVRETVTVEEIM 61

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
                 +   V S          Y        +  D ++IDT G     + L    G  +
Sbjct: 62  KEGYGPNGAIVESYDRLMPHIERYITKILELERGKDYVLIDTPG--QIETFLFHEFGVRL 119

Query: 220 R-------VLKRLDPHA---PHSVLQV---------------LDATTGQNALRQVEMFHA 254
                   V+    P     PH    V               + A    + +  +E    
Sbjct: 120 MENLPAPLVVYLFSPEVLRKPHDYCFVRFFALMIDLRLGSTTVPALNKVDLVDNLERHKQ 179

Query: 255 VAGTTGLIMT--KMDGTARGGGLIPIVVTHKIP-------VYFLG--VGEGINDLE 299
                  + +  K+D + +G  L+   +   +P       + +L    GEG +DLE
Sbjct: 180 YLEDMEYLTSRLKLDSSTQG--LLAYKLCTFLPEVSPPVRILYLSAKTGEGFDDLE 233


>gi|154492504|ref|ZP_02032130.1| hypothetical protein PARMER_02138 [Parabacteroides merdae ATCC 43184]
 gi|154087729|gb|EDN86774.1| hypothetical protein PARMER_02138 [Parabacteroides merdae ATCC 43184]
          Length = 1619

 Score = 46.4 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 3/173 (1%)

Query: 92   IHKMLMPLSK-PFNWDFSHRPHVILVVGVNGVGKTTV-IGKLSKKMSDAGLKVMLAAGDT 149
            + ++L  LS+         RP  I+V+   G GKT V + KL+  + +  +K       T
Sbjct: 1042 LQRLLGKLSETQLEIVKDDRPGSIVVMAGPGSGKTRVLVHKLAYLLLEEDVKHEQLLMLT 1101

Query: 150  F-RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            F R+AA +  +   D         EI +  +        Q   +K   +IID  G++ N 
Sbjct: 1102 FSRAAASEFRRRLWDLIGTAAGYVEIKTFHSYCFDLLGLQGSLEKSSSVIIDAVGKIDNG 1161

Query: 209  SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
             + +  I K + V+             V         L+ V +          
Sbjct: 1162 EVEINRITKTVLVIDEAQDMTEDEFALVEALIRKNEDLKVVAVGDDDQNIYSF 1214


>gi|332653670|ref|ZP_08419414.1| phosphoribulokinase/uridine kinase family protein [Ruminococcaceae
           bacterium D16]
 gi|332516756|gb|EGJ46361.1| phosphoribulokinase/uridine kinase family protein [Ruminococcaceae
           bacterium D16]
          Length = 311

 Score = 46.4 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSH------RPHVILVVGVNGVGKTTVIGKLSKKM 135
           +R+  DV E + +     S+  +           R  ++L+ G +G GKTT   K+++++
Sbjct: 10  RRIQSDVKEFLAECDENYSQRVSLAADKILSNIERSPIVLLSGPSGSGKTTTAMKIAEEL 69

Query: 136 SDAGLKVMLAAGDTF 150
              G+     A D +
Sbjct: 70  QRRGVNTHAVAMDNY 84


>gi|126656878|ref|ZP_01728056.1| hypothetical protein CY0110_01829 [Cyanothece sp. CCY0110]
 gi|126621716|gb|EAZ92425.1| hypothetical protein CY0110_01829 [Cyanothece sp. CCY0110]
          Length = 195

 Score = 46.4 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 54/153 (35%), Gaps = 27/153 (17%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  + +     +L   D  RSA                + S        
Sbjct: 11  GVGKTTTSIHLAAYLQEK-APTLLIDADRNRSA---------------LIWSREDKLPFH 54

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A +A   +  +K   +I+DT  R           G  + ++     H        LD  
Sbjct: 55  VASQAGSTSIIRKYPHIIVDTRARPEPEEFKDLADGSDLLIVPTTPNH--------LDLD 106

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
               A+ Q++  +A       ++TK+DG  + G
Sbjct: 107 ATFKAVEQLQALNANFKV---LLTKVDGRTKSG 136


>gi|301165901|emb|CBW25474.1| putative flagellar biosynthesis protein [Bacteriovorax marinus SJ]
          Length = 475

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 108/300 (36%), Gaps = 26/300 (8%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
            K       KL E   ++    + +     EL   L   DI       +V++ + +    
Sbjct: 194 RKKIDDLEKKLFELTKNVERLDKKEPNGIYELRATLRSLDISEKYIHNLVKKAIFEMSRD 253

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGV--NGVGKTTVIGKLSKK 134
           ++    V+++ +  + +ML  ++        S     ++ V +     G+T++  K+   
Sbjct: 254 ELEDSEVVFEFA--LREMLECVNTEMPLFSSSDSEQGVVTVILSETSTGQTSMAYKIGAL 311

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-SADFVCSEIGSDAAALAYEAFKQAQAKK 193
             D+ +                + K ++ +    +   +   ++  +L  +  ++ +   
Sbjct: 312 KPDSTIVRSTLN------GVQGEGKEFSRKLFGLNVSEASNIAETVSLCRKTIEEGKCAF 365

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
           +D           NNS  +    K I  L+R        VL  L A   +   R+V   +
Sbjct: 366 ID---------YKNNSEDINETKKFIDGLRR--SFGKVEVLVSLSAIHSEIYNRKVVSRY 414

Query: 254 AVAGTTGLIMTKMDGTARGGGLIPIVVT-HKIPVYFLGVGEGI-NDLEPFVAKDFSAVIT 311
                 G++++ +D     G L  I      +P+ F G GE + +DLE   A+   A I 
Sbjct: 415 KSLA-NGIVISNLDLCLNFGALFNITEENSDLPLKFYGTGEVVPDDLEAATAERLLAGIF 473


>gi|56068211|gb|AAV70506.1| arsenite translocating ATPase [Bacillus sp. MB24]
          Length = 586

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 13/171 (7%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKL 131
           +   K V     L    E  + + +P  +    + S     VI  +G  GVGKTTV   +
Sbjct: 290 ENMRKLVQPMENLSISGEEANTVSIPSLQTLITNLSESGKRVIFTMGKGGVGKTTVASAI 349

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +  +++ G  V L   D    AA     +  ++ +      +   +      E  +QA+ 
Sbjct: 350 AVGLAEKGHHVHLTTTD---PAAHIDYVMHGEQGNITISRIDPKVEVENYRKEVIEQAKD 406

Query: 192 KKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
                  +D  G  +    L         + R L  +   A   ++ +  A
Sbjct: 407 T------VDEEGLAYLEEDLRSPCTEEIAVFRALADIVERANDEIVVIDTA 451


>gi|172037361|ref|YP_001803862.1| ParA family chromosome partioning protein ParB family [Cyanothece
           sp. ATCC 51142]
 gi|171698815|gb|ACB51796.1| putative chromosome partitioning protein, ParA family [Cyanothece
           sp. ATCC 51142]
          Length = 195

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 54/153 (35%), Gaps = 27/153 (17%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  + +     +L   D  RSA                + S        
Sbjct: 11  GVGKTTTSIHLAAYLQEK-APTLLIDADRNRSA---------------LIWSREDKLPFH 54

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A +A   +  +K   +I+DT  R           G  + ++     H        LD  
Sbjct: 55  VASQAGSTSIIRKYPHIIVDTRARPEPEEFKDLADGSDLLIVPTTPNH--------LDLD 106

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
               A+ Q++  +A       ++TK+DG  + G
Sbjct: 107 ATFKAVEQLQALNANFKV---LLTKVDGRTKSG 136


>gi|194892964|ref|XP_001977777.1| GG19228 [Drosophila erecta]
 gi|190649426|gb|EDV46704.1| GG19228 [Drosophila erecta]
          Length = 679

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 19/141 (13%)

Query: 67  VEELLTKR-YAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSHR------PHVI 114
           + +L      A +  +      +SE + K+L P     ++KPF             PHVI
Sbjct: 161 LNQLKKTADLAIENELHVCPSVMSEELRKLLPPTSETVMTKPFPIRGERTIADCTTPHVI 220

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
            +VG+   GKT +  KL++ ++  G+   +     +R  A    K               
Sbjct: 221 AMVGLPARGKTFISKKLARYLNWIGIATRVFNLGEYRRHATTAYKSHE-------FFRAD 273

Query: 175 GSDAAALAYEAFKQAQAKKVD 195
             +A A+      QA     D
Sbjct: 274 NEEAMAIRNRCANQALHDSCD 294


>gi|149177888|ref|ZP_01856486.1| hypothetical protein PM8797T_06095 [Planctomyces maris DSM 8797]
 gi|148843228|gb|EDL57593.1| hypothetical protein PM8797T_06095 [Planctomyces maris DSM 8797]
          Length = 368

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I+V G  G GKTT +G+L+K  SD GL V +   D
Sbjct: 8   IMVGGFLGAGKTTTLGRLAKYYSDQGLNVGVVTND 42


>gi|288915931|ref|ZP_06410313.1| LAO/AO transport system ATPase [Frankia sp. EUN1f]
 gi|288352560|gb|EFC86755.1| LAO/AO transport system ATPase [Frankia sp. EUN1f]
          Length = 312

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 11/152 (7%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           V  LLT+  A D+     L  + E    ++  +++        R HV+ V G  G GK+T
Sbjct: 6   VTSLLTRARAADIRALGRLITLVENEPSIVQDINELI-LPLVGRAHVVGVTGPPGAGKST 64

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRS---AAI--DQLKIWADRTSADFVCSEIGSD---- 177
            +G L+  + + G  V + A D   +    A+  D+L++             + S     
Sbjct: 65  TVGALTAVLRERGRTVAVLAIDPSSATTGGALLGDRLRMHQHDLDQGVFIRSMASRGSLG 124

Query: 178 -AAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             ++ A  A +   A   DV+I++T G   + 
Sbjct: 125 GLSSKASTAVRVLDAAGFDVVILETVGVGQSE 156


>gi|297811953|ref|XP_002873860.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319697|gb|EFH50119.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1168

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 70/191 (36%), Gaps = 30/191 (15%)

Query: 22  ASTSLKLKEGITDI--ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE--ELLTKRYAK 77
             T     E +  I  ++   L++   E+        D+   V +++ +   ++++    
Sbjct: 129 EETKNNWTEALKSIPLLTGFVLNENSDED--------DLIFKVVKEVKKALNIISRAPPN 180

Query: 78  DVSVQRVLYDVSEL-------IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +    +   V +        +   L  L +  ++ F     +I VVG+ G+GKTT++ K
Sbjct: 181 RLEGTVLSSTVHQKKLESSCGVDLRLKQLEEKLSFGFEDTTRIIGVVGMPGIGKTTLVKK 240

Query: 131 LSKKMSDAGLKVMLA--AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           L +K+ +  L  +L     +T R   +  L           +  E         +E  + 
Sbjct: 241 LYEKLKNEFLSHVLILDIHETSREQGLSYL---------PTILLEDLLKVKNPMFETVQA 291

Query: 189 AQAKKVDVLII 199
           A     D L+ 
Sbjct: 292 AHEGYKDQLLK 302


>gi|42527791|ref|NP_972889.1| phosphoribulokinase/uridine kinase family protein [Treponema
           denticola ATCC 35405]
 gi|41818619|gb|AAS12808.1| phosphoribulokinase/uridine kinase family protein [Treponema
           denticola ATCC 35405]
          Length = 550

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +GV+   ++ + + +++    V +  +L       +  L  ++K      + R  VIL+ 
Sbjct: 239 VGVSSVGQLNDLITSRKIKDYVEITEILQ------NNKLAEIAKKITAKKTAR--VILIA 290

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           G +  GKTT   KLS ++   G    + + D F
Sbjct: 291 GPSSSGKTTSAKKLSMQLKVLGYVPKVISLDDF 323


>gi|237752393|ref|ZP_04582873.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375882|gb|EEO25973.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 371

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 96/276 (34%), Gaps = 48/276 (17%)

Query: 49  LEDLLIRSD-IGV---------AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           +++ L   D + +          VA K+ E +  K  A+ V+  ++  D+ +   +    
Sbjct: 28  VKETLTEGDSVAIRVEIPSASSEVADKLREAITQKLNAQGVT--KINLDIKQPKPQAQTQ 85

Query: 99  LSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             +          + I+V  G  GVGK+T    L+  ++  G KV L   D +       
Sbjct: 86  KPQGTKNLAPQIKNFIMVSSGKGGVGKSTTSVNLAIALAQQGKKVALLDADIYGPN---- 141

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN-SILMAGIG 216
                     +    E+      L        QA  ++++   + G L++    L+    
Sbjct: 142 ---VPRMLGLEKDKPEVDQKLKKLIP-----LQAYGIEMI---SMGVLYDEGQSLIWRGP 190

Query: 217 KMIRVLKRLDPHAPHSVLQV----LDATTGQNALRQVEMFHAVAGTTGLIMTK--MDGTA 270
            +IR ++++        L V    +   TG   L   +     AG       K  +D  A
Sbjct: 191 MIIRAIEQMLSDVLWGELDVMVIDMPPGTGDAQLTLAQSVPVTAGVAVSTPQKVALDDGA 250

Query: 271 RGGGLIPIVVTHKIPVY--------FL--GVGEGIN 296
           R    + +    KIP+         F+  G GE  +
Sbjct: 251 R---ALDMFAKLKIPLAGIVENMSGFICPGCGEEYD 283


>gi|300728304|ref|ZP_07061670.1| phosphoribulokinase family protein [Prevotella bryantii B14]
 gi|299774416|gb|EFI71042.1| phosphoribulokinase family protein [Prevotella bryantii B14]
          Length = 556

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           IGV     + E +      + ++V   L +    I ++   ++   N         +L+ 
Sbjct: 246 IGVRTVGDLNEVIKNGEETQMINVSEALQEKK--IVQIADQIADNKNIKL------VLLA 297

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           G +  GKTT   +L+ ++   G+K ++ + D +
Sbjct: 298 GPSSSGKTTTCKRLAVQLMANGIKPLMISLDDY 330


>gi|224502920|ref|ZP_03671227.1| arsenical pump-driving ATPase [Listeria monocytogenes FSL R2-561]
          Length = 574

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           +S Q+   +  E        L             +I  +G  GVGKTTV  K++KK++  
Sbjct: 293 LSDQQPALEEQEKEVTDFPNLDTVVKEFIRSNKKIIFTMGKGGVGKTTVAIKIAKKLAQE 352

Query: 139 GLKVMLAAGDTFRSAAIDQLKIW-ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           G KV LA  D       D L ++ +D         +   + A    E   +A+A   D
Sbjct: 353 GKKVHLATTD-----PADHLNMFISDDLPISISHIDEEKELADYKEEVLSKARATMND 405


>gi|222111043|ref|YP_002553307.1| arginine/ornithine transport system ATPase [Acidovorax ebreus TPSY]
 gi|221730487|gb|ACM33307.1| LAO/AO transport system ATPase [Acidovorax ebreus TPSY]
          Length = 342

 Score = 46.0 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 54/154 (35%), Gaps = 24/154 (15%)

Query: 70  LLTKRYAK-----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +  AK     + +         EL+  +L    + F    S         GV GVGK
Sbjct: 17  VRRRAMAKAITLLESTRADHRTQGDELLTALLPHTGRAFRLGIS---------GVPGVGK 67

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAI-------DQLKIWADRTSADFVCSEI 174
           +T I  L   +   GLKV + A D   T    +I       + L +  D        S  
Sbjct: 68  STFIEALGLHLIAQGLKVAVLAIDPSSTVSGGSILGDKTRMEHLSVHPDAYIRPSPSSGT 127

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
               A    EA    +A   DV+II+T G   + 
Sbjct: 128 LGGVAEKTREAMLVCEAAGYDVVIIETVGVGQSE 161


>gi|294955844|ref|XP_002788708.1| XPA-binding protein, putative [Perkinsus marinus ATCC 50983]
 gi|239904249|gb|EER20504.1| XPA-binding protein, putative [Perkinsus marinus ATCC 50983]
          Length = 292

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 19/188 (10%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-TFRSAAI- 155
           P+         H+P VI+V+G+ G GK+T + +L   ++    +V     D   R+    
Sbjct: 15  PMDGIEKESNGHKPTVIVVIGMAGAGKSTFVHRLYLHLTAQEKRVYSVNLDPAVRNVPYP 74

Query: 156 ------------DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
                       D +K +    +   + S                 +A ++D +I+DT G
Sbjct: 75  TNIDIRDTVKYKDVMKHFGLGPNGAIMTSLNLFATRFDQAMGLIDQRAPELDYVIVDTPG 134

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ----NALRQVEMFHAVAGTT 259
           ++       A    ++  L    P     VL  +  T+      N L    + +     T
Sbjct: 135 QIEV-FNWSASGTIILDSLAMAYPTVTLFVLDTVRCTSPTTFMSNMLYVTSIMYKTKLPT 193

Query: 260 GLIMTKMD 267
             +  K D
Sbjct: 194 VAVFNKCD 201


>gi|298292739|ref|YP_003694678.1| LAO/AO transporter ATPase [Starkeya novella DSM 506]
 gi|296929250|gb|ADH90059.1| LAO/AO transport system ATPase [Starkeya novella DSM 506]
          Length = 340

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 83/252 (32%), Gaps = 48/252 (19%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           EL+ +    +V     L   +E  + +    L+    +  + R HVI + GV G GK+T+
Sbjct: 9   ELVERAARGEVPAIGRLISRAEAGMPEARAALATI--YRRAGRAHVIGLTGVPGSGKSTL 66

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKI----WADRTSADFVCSEIGSDAAA 180
           +  L+ ++   GLKV + A D        AI   +I      +                 
Sbjct: 67  VAALTARLRTQGLKVGIVAVDPSSPYSGGAILGDRIRMSDLVNDPGVYIRSMATRGAMGG 126

Query: 181 LAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           LA    +A         D +II+T G   +                     A H+ + V 
Sbjct: 127 LARATLDAVDILDLGGFDTIIIETVGVGQDEVE---------------IAKASHTTVVVS 171

Query: 238 DATTGQNALRQVEMFH-AVAGTTGLIMTKMDGTA------------RGGGLIPIVVTHKI 284
               G + ++ ++     +A     +++K D +               G         + 
Sbjct: 172 APGLG-DEIQAIKAGMLEIADIH--VVSKCDRSDANRTLVDIKQMLTLGAATAQKPEWQT 228

Query: 285 PV----YFLGVG 292
           PV     + G G
Sbjct: 229 PVVGVSSYTGDG 240


>gi|239944329|ref|ZP_04696266.1| putative transport system kinase [Streptomyces roseosporus NRRL
           15998]
 gi|239990782|ref|ZP_04711446.1| putative transport system kinase [Streptomyces roseosporus NRRL
           11379]
          Length = 322

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 74/224 (33%), Gaps = 35/224 (15%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           D+ V     +VE+    R      +  ++   S  + +++  L+       +   +V+ +
Sbjct: 4   DVDVPT---LVEQARAGRPRAVARLISLVEGASPQLREVMAALA-----PLAGHAYVVGL 55

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKI----WADRTSADF 169
            G  GVGK+T    L      AG +V + A D        A+   ++     A       
Sbjct: 56  TGSPGVGKSTSTSALVSAYRRAGKRVGVLAVDPSSPFSGGALLGDRVRMSDHASDPGVYI 115

Query: 170 VCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                      LA+   +A +   A   DV++++T G   +                 + 
Sbjct: 116 RSMATRGHLGGLAWAAPQAIRVLDAAGCDVVLVETVGVGQSEVE--------------IA 161

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
             A  SV+ +       + ++  +      G    ++ K D   
Sbjct: 162 SQADTSVVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 202


>gi|237710666|ref|ZP_04541147.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|229455388|gb|EEO61109.1| predicted protein [Bacteroides sp. 9_1_42FAA]
          Length = 418

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI+  G  GVGKTT    +++ ++  G KV +   D    +   + +            
Sbjct: 3   AVIIYSGKGGVGKTTTTANIARLLAKQGNKVFIIDADINTPSMNTEFEGDHPHEMIWVHS 62

Query: 172 SE---------IGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           S            S        A K+  +   D + IDT
Sbjct: 63  SGNMFSKFIYLEKSMVRQYLELAKKKIHSINPDYVFIDT 101


>gi|288931946|ref|YP_003436006.1| LAO/AO transporter ATPase [Ferroglobus placidus DSM 10642]
 gi|288894194|gb|ADC65731.1| LAO/AO transport system ATPase [Ferroglobus placidus DSM 10642]
          Length = 347

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 95/275 (34%), Gaps = 46/275 (16%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            ++IVE +L K           + +      ++L  +     +  + + HV+ + G  GV
Sbjct: 3   VEEIVEGILNKNRRALARAITYVENEYPEGKEILKRV-----YHRTGKAHVVGITGFPGV 57

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAA-------------GDTFRSAAIDQLKIWADRTSADF 169
           GK+T + KL+++    G  V + A             GD  R   +D            F
Sbjct: 58  GKSTTVSKLTQEFRRRGKTVGIVAVDPGSPFTGGALLGDRLRLDGLDVNNPLWLDEGVFF 117

Query: 170 VCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSI-----------LMAGI 215
                   A  +A    +  +   A   DV+ ++T G   +              LM  +
Sbjct: 118 RSMSSRGRAGGIAAKTGDVVRLMDAFGFDVIFVETVGAGQSEVDIIEVADTSIVILMPEM 177

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG---LIMTKM---DGT 269
           G  I++ K          + V++      A + V+   ++         I++K    D  
Sbjct: 178 GDDIQINKAGILEIGD--IYVVNKADLGGAEKTVKWLKSMIMMDQEALEILSKTTHADEH 235

Query: 270 A-RGGGLIPIVVTHK--IPVYFLGV---GEGINDL 298
           A   G +   +   K  IP     V   GEGI +L
Sbjct: 236 AVESGEIFERLKRTKDWIPPVLTTVAEKGEGIKEL 270


>gi|320102911|ref|YP_004178502.1| hypothetical protein Isop_1368 [Isosphaera pallida ATCC 43644]
 gi|319750193|gb|ADV61953.1| hypothetical protein Isop_1368 [Isosphaera pallida ATCC 43644]
          Length = 383

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 82/228 (35%), Gaps = 18/228 (7%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS--KKMSDAGLKVMLAAG 147
           E + + ++   +P          ++ + G +G GKTT   +L+    +       + A  
Sbjct: 149 EELTRRIVVAPQPDAPPEGEPARLVALTGPSGGGKTTAAIRLATELALRRGRQVGLAAID 208

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID--TAGRL 205
           D+ R+      +  AD        +    + AA    A ++ +   + V+++D    G  
Sbjct: 209 DSDRA-----RRGLADLFDLPLARARDLDELAA----AVERLRLLGLRVIVLDLPPTG-P 258

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
            +   L      + + L         + + V  +++       V       G + +I+ K
Sbjct: 259 ADEEDLSRLSRALRQCLGDGASSGLETHVVVSASSSPSFLADTVRAHRERLGASRVILGK 318

Query: 266 MDGTARGGGLIPIVVTHKIPVYFLGVG-EGINDLEPFVAKDFSAVITG 312
           +D   R   L+ I+     P+ F+  G  G   L     +  + +I G
Sbjct: 319 LDEPTRPANLLAILDQ---PLGFVQTGPPGKGGLGRPSPRALARLILG 363


>gi|187925677|ref|YP_001897319.1| arsenite-activated ATPase ArsA [Burkholderia phytofirmans PsJN]
 gi|187716871|gb|ACD18095.1| arsenite-activated ATPase ArsA [Burkholderia phytofirmans PsJN]
          Length = 584

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 15/171 (8%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILV-VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +   L     P   D     H +++ +G  GVGKTTV   ++  ++  G  V+L+  D  
Sbjct: 305 LSVELPGGLLPLVDDLEKAGHGLVMTMGKGGVGKTTVAAAIALDLAQRGHAVLLSTTD-- 362

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             AA     +            +   +      E   +A A       +D  G+      
Sbjct: 363 -PAAHVAWTLQESLPGLTVSRIDAEQEVNRYRDEVLAKAGAH------LDAQGKAMLEED 415

Query: 211 L---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA--LRQVEMFHAVA 256
           L         + R   R    A  S + +  A TG     +   E +H   
Sbjct: 416 LRSPCTEEIAVFRAFARTVDEARDSFVILDTAPTGHTILLMDSAEAYHREV 466


>gi|294955842|ref|XP_002788707.1| XPA-binding protein, putative [Perkinsus marinus ATCC 50983]
 gi|239904248|gb|EER20503.1| XPA-binding protein, putative [Perkinsus marinus ATCC 50983]
          Length = 380

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 19/188 (10%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-TFRSAAI- 155
           P+         H+P VI+V+G+ G GK+T + +L   ++    +V     D   R+    
Sbjct: 15  PMDGIEKESNGHKPTVIVVIGMAGAGKSTFVHRLYLHLTAQEKRVYSVNLDPAVRNVPYP 74

Query: 156 ------------DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
                       D +K +    +   + S                 +A ++D +I+DT G
Sbjct: 75  TNIDIRDTVKYKDVMKHFGLGPNGAIMTSLNLFATRFDQAMGLIDQRAPELDYVIVDTPG 134

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ----NALRQVEMFHAVAGTT 259
           ++       A    ++  L    P     VL  +  T+      N L    + +     T
Sbjct: 135 QIEV-FNWSASGTIILDSLAMAYPTVTLFVLDTVRCTSPTTFMSNMLYVTSIMYKTKLPT 193

Query: 260 GLIMTKMD 267
             +  K D
Sbjct: 194 VAVFNKCD 201


>gi|56807377|ref|ZP_00365360.1| COG0552: Signal recognition particle GTPase [Streptococcus pyogenes
           M49 591]
          Length = 317

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 15  RKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            K  +    T       +    ++ RR+D+   E+LE++LI SD+GV VA  + EEL  +
Sbjct: 213 EKYKRSLKKTRTGFSARLNSFFANFRRVDEEFFEDLEEMLILSDVGVHVATTLTEELRYE 272

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
              ++      L  V  ++ K++    K   ++
Sbjct: 273 AKLENAKKPDALKRV--IVEKLVDIYEKDGRYN 303


>gi|198471051|ref|XP_001355482.2| GA17426 [Drosophila pseudoobscura pseudoobscura]
 gi|198145744|gb|EAL32541.2| GA17426 [Drosophila pseudoobscura pseudoobscura]
          Length = 709

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 12/107 (11%)

Query: 67  VEELLTKR-YAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSHR------PHVI 114
           + +L      A +  +      +SE + K+L P     ++KPF             PHVI
Sbjct: 191 LNQLKKTADLAIENELHVCPSVMSEELRKLLPPTSETVMTKPFPIRGERTIADCTTPHVI 250

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
            +VG+   GKT +  KL++ ++  G+   +     +R  A    K  
Sbjct: 251 AMVGLPARGKTFISKKLARYLNWIGIATRVFNLGEYRRHATTAYKSH 297


>gi|195059472|ref|XP_001995644.1| GH17653 [Drosophila grimshawi]
 gi|193896430|gb|EDV95296.1| GH17653 [Drosophila grimshawi]
          Length = 533

 Score = 45.6 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 12/107 (11%)

Query: 67  VEELLTKR-YAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSHR------PHVI 114
           + +L      A +  +      +SE + K+L P     ++KPF             PHVI
Sbjct: 18  LNQLKKTADLAIENELHVCPSVMSEELRKLLPPTSETVMTKPFPIRGERTIADCTTPHVI 77

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
            +VG+   GKT +  KL++ ++  G+   +     +R  A    K  
Sbjct: 78  AMVGLPARGKTFISKKLARYLNWIGIATRVFNLGEYRRHATTAYKSH 124


>gi|54027810|ref|YP_122050.1| putative partitioning protein parA [Nocardia farcinica IFM 10152]
 gi|54019318|dbj|BAD60686.1| putative partitioning protein parA [Nocardia farcinica IFM 10152]
          Length = 234

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC---SEIGSD 177
           G GKTT     +  +S  GL V++   DT    A D ++                     
Sbjct: 17  GPGKTTSAILTAIALSRRGLTVVVICADTRTRGATDWVQEAERVGDVVPFRLAIWHESDG 76

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             +      +  ++   DV+IIDT G    N
Sbjct: 77  PLSQYARGVE--RSTGADVVIIDTGGEQPEN 105


>gi|299534976|ref|ZP_07048304.1| Arsenite-translocating ATPase ArsA [Lysinibacillus fusiformis ZC1]
 gi|298729618|gb|EFI70165.1| Arsenite-translocating ATPase ArsA [Lysinibacillus fusiformis ZC1]
          Length = 589

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 21/175 (12%)

Query: 80  SVQRVLYDVSELIHK-------MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           S+Q  + D  E+IH+        +  + +        +P +I  +G  GVGKTTV   ++
Sbjct: 290 SMQAWMTD-QEVIHEDESNEETKIPEIEEMIADYLERKPKIIFTMGKGGVGKTTVASYIA 348

Query: 133 KKMSDAGLKVMLAAGDTFRSAA-IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            ++++ G+ V L   D    AA ++         +      +   + +    E   +A  
Sbjct: 349 LRLAEEGMHVHLTTTD---PAAHLNWTFGDDKIKNVTVSRIDPKVEVSNYEAEVLAKASE 405

Query: 192 KKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
              +       G       L         + R    +  +    V+ +  A TG 
Sbjct: 406 TMNE------EGLAFVKEDLASPCTEEIAVFRAFANVVENHQDEVIIIDTAPTGH 454


>gi|294084432|ref|YP_003551190.1| GTP-binding signal recognition particle SRP54, G- domain-containing
           protein [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664005|gb|ADE39106.1| GTP-binding signal recognition particle SRP54, G- domain protein
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 383

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 74/217 (34%), Gaps = 28/217 (12%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L ++     V  ++        +      +  L  ++EL  +++ P ++           
Sbjct: 147 LRQAGFSPEVVNEL-----QHAFEGQTYEKARLSFMNELARQLIRPNTEDLFEAR----- 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGL-KVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +I VVG +G GKTT+  K++    + G+   M+    T    A D +K  A   +   V 
Sbjct: 197 LICVVGSSGSGKTTLATKIAAHCKETGIANNMILGTVTSERQAGDTIKDHARLMNMPSVD 256

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
             +      +     + ++   +DV            S         IR        A  
Sbjct: 257 FPLAELPIRVK----ETSRRMIMDV------------SAQPDQAVAAIRKATAALDPARV 300

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           +V+Q +   +    +      +     T + +TK+D 
Sbjct: 301 AVVQAIPGGSSSVMIAHQCALYKQLSPT-IALTKLDE 336


>gi|82523783|emb|CAI78527.1| putative carbon monoxide dehydrogenase accessory protein
           [uncultured bacterium]
          Length = 321

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVV--GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + L+ ++          P    +V  G  GVGKTT+   L+  +S  G  V+    D  
Sbjct: 40  REHLVRVATDLKNKTQPGPSGFRIVITGKGGVGKTTLTATLAHLLSSEGRHVLAVDADPQ 99

Query: 151 RSAAI 155
           ++ A 
Sbjct: 100 QNLAY 104


>gi|254461961|ref|ZP_05075377.1| hypothetical protein RB2083_2552 [Rhodobacterales bacterium
           HTCC2083]
 gi|206678550|gb|EDZ43037.1| hypothetical protein RB2083_2552 [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 498

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 61/204 (29%), Gaps = 41/204 (20%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLS-KKMSDAGLK----- 141
            EL  ++ +   KP   D       IL + G  G GKTT   KL+  +  D  +K     
Sbjct: 285 QELAAQLSVSSKKPTPLDSE-----ILFIFGPGGAGKTTTAAKLAFARHRDCNIKPSLHT 339

Query: 142 --VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
                   D        +L  ++    AD +     S          K+ Q   VD    
Sbjct: 340 IGPKCFVSDI-------KLNQFSQLLDADLIEIIEPSH--------IKKDQQVIVDCCYK 384

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           DT+  +     L               P A    +  L  T   +A        A     
Sbjct: 385 DTSDIIQAYETLKNDF-----------PDARVQPILTLPGTWSNHATEHYCRDIAQLE-A 432

Query: 260 GLIMTKMDGTARGGGLIPIVVTHK 283
             I+T +  +A G      +  HK
Sbjct: 433 CTILTHLQISALGIAGFSALAEHK 456


>gi|302869545|ref|YP_003838182.1| LAO/AO transport system ATPase [Micromonospora aurantiaca ATCC
           27029]
 gi|315503993|ref|YP_004082880.1| lao/ao transport system atpase [Micromonospora sp. L5]
 gi|302572404|gb|ADL48606.1| LAO/AO transport system ATPase [Micromonospora aurantiaca ATCC
           27029]
 gi|315410612|gb|ADU08729.1| LAO/AO transport system ATPase [Micromonospora sp. L5]
          Length = 333

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 87/260 (33%), Gaps = 38/260 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L+ +  A D      L  + E   ++L  ++      ++    V+ + G  GVGK+T   
Sbjct: 24  LVERARAGDPRAVARLITLVESGDEVLPQVAAAL-APYAGHAQVVGLTGSPGVGKSTTTN 82

Query: 130 KLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIGSD---AA 179
           +L + +   G +V + A D        AI      ++  A                   +
Sbjct: 83  ELVRALRARGHRVGVLAIDPSSPFTGGAILGDRVRMQDHATDPGVYIRSMSSRGHLGGLS 142

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A   +A +  +    DV++++T G                     ++  +      VL A
Sbjct: 143 AATPQAVRVLEGAGCDVVLVETVGVGQAE----------------VEVASLADTTLVLLA 186

Query: 240 TTGQNALRQVEMFH-AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-D 297
               +A++ V+     +A     ++ K D     G    +     +    + +GE    +
Sbjct: 187 PGMGDAIQAVKAGILEIADV--FVVNKADRD---GADATVRDIQGM----IALGERGPGE 237

Query: 298 LEPFVAKDFSAVITGCLDYG 317
             P V +  +A   G  D  
Sbjct: 238 WRPQVVRSIAARAEGIDDIA 257


>gi|315579441|gb|EFU91632.1| virulence-associated protein E [Enterococcus faecalis TX0630]
          Length = 811

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 32/119 (26%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I  I++  ++DD + +E+E             ++ +E L              +  V 
Sbjct: 451 EKIYGIVNRGKIDDALVQEIERN------SYDPVKEYLESL----------HWDGVPRVE 494

Query: 90  ELIHKMLMPLSKPFNWDFSHR--------------PHVILVV--GVNGVGKTTVIGKLS 132
            L+   L     PFN   + +                  ++V  G  G+GKT +  KL+
Sbjct: 495 TLLIDYLGAEDTPFNRVVTKKFLTAAVGRIFVPGIKFDYMLVTSGPQGIGKTLLPAKLA 553


>gi|237720975|ref|ZP_04551456.1| predicted protein [Bacteroides sp. 2_2_4]
 gi|229449810|gb|EEO55601.1| predicted protein [Bacteroides sp. 2_2_4]
          Length = 418

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI+  G  GVGKTT    +++ ++  G KV +   D    +   + +            
Sbjct: 3   AVIIYSGKGGVGKTTTTANIARLLAKQGNKVFIIDADINTPSMNTEFEGDHPHEMIWVHS 62

Query: 172 SE---------IGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           S            S        A K+  +   D ++IDT
Sbjct: 63  SGNMFSKFIYLEKSMVRQYLELAKKKIHSINPDYVLIDT 101


>gi|257088835|ref|ZP_05583196.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256997647|gb|EEU84167.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|315160595|gb|EFU04612.1| virulence-associated protein E [Enterococcus faecalis TX0645]
          Length = 811

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 32/119 (26%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I  I++  ++DD + +E+E             ++ +E L              +  V 
Sbjct: 451 EKIYGIVNRGKIDDALVQEIERN------SYDPVKEYLESL----------HWDGVPRVE 494

Query: 90  ELIHKMLMPLSKPFNWDFSHR--------------PHVILVV--GVNGVGKTTVIGKLS 132
            L+   L     PFN   + +                  ++V  G  G+GKT +  KL+
Sbjct: 495 TLLIDYLGAEDTPFNRVVTKKFLTAAVGRIFVPGIKFDYMLVTSGPQGIGKTLLPAKLA 553


>gi|195398767|ref|XP_002057992.1| GJ15740 [Drosophila virilis]
 gi|194150416|gb|EDW66100.1| GJ15740 [Drosophila virilis]
          Length = 726

 Score = 45.2 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 12/107 (11%)

Query: 67  VEELLTKR-YAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSHR------PHVI 114
           + +L      A +  +      +S+ + K+L P     ++KPF             PHVI
Sbjct: 197 LNQLKKTADLAIENELHVCPSIMSDELRKLLPPTSETVMTKPFPIRGERTIADCTTPHVI 256

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
            +VG+   GKT +  KL++ ++  G+   +     +R  A    K  
Sbjct: 257 AMVGLPARGKTFISKKLARYLNWIGIATRVFNLGEYRRHATTAYKSH 303


>gi|261334292|emb|CBH17286.1| XPA-interacting protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 290

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                +P VILVVG+ G GKTT++ +L     + G K      D
Sbjct: 1   MSTKPKPLVILVVGMAGTGKTTLVHRLQHYAEEKGKKTYFINLD 44


>gi|218134589|ref|ZP_03463393.1| hypothetical protein BACPEC_02492 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989974|gb|EEC55985.1| hypothetical protein BACPEC_02492 [Bacteroides pectinophilus ATCC
           43243]
          Length = 323

 Score = 45.2 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 12/162 (7%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+ G  G GKTT I K +K + D G  + +   D     AI+   +       D+   E+
Sbjct: 6   LITGFLGSGKTTFIKKYAKHLMDKGHHIGILENDF---GAINVDMMLLQELMGDYCDLEM 62

Query: 175 GSDAAALAYEA------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            S                        D +I++ +G    +        + +     +   
Sbjct: 63  ISGGCDKETHRRRFRTKLIAMAMSGYDRIIVEPSGIYDIDEFFDVLHDEPLDQWYEVGSV 122

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
                 Q+ D  + +            A    +I++  D  +
Sbjct: 123 IAIVDAQIPDKLSKEADYLLAS---EAADAGRIILSHTDEAS 161


>gi|195133686|ref|XP_002011270.1| GI16091 [Drosophila mojavensis]
 gi|193907245|gb|EDW06112.1| GI16091 [Drosophila mojavensis]
          Length = 537

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 27/165 (16%)

Query: 67  VEELLTKR-YAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSHR------PHVI 114
           + +L      A +  +      +S+ + K+L P     ++KPF             PHVI
Sbjct: 18  LNQLKKTADLAIENELHVCPSVMSDELRKLLPPTSETVMTKPFPIRGERTIADCTTPHVI 77

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
            +VG+   GKT +  KL++ ++  G+   +     +R  A    K               
Sbjct: 78  AMVGLPARGKTFISKKLARYLNWIGIATRVFNLGEYRRHATTAYKSHE-------FFRAD 130

Query: 175 GSDAAALAYEAFKQAQAKKVD--------VLIIDTAGRLHNNSIL 211
             +A A+      QA     D        + + D     H+   L
Sbjct: 131 NEEAMAIRNRCANQALHDSCDWLLSGLGSIAVFDATNSTHDRRQL 175


>gi|194762988|ref|XP_001963616.1| GF20194 [Drosophila ananassae]
 gi|190629275|gb|EDV44692.1| GF20194 [Drosophila ananassae]
          Length = 729

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 12/107 (11%)

Query: 67  VEELLTKR-YAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSHR------PHVI 114
           + +L      A +  +      +SE + K+L P     ++KPF             PHVI
Sbjct: 211 LNQLKKTADLAIENELHVCPSVMSEELRKLLPPTSETVMTKPFPVRGERTIADCTTPHVI 270

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
            +VG+   GKT +  KL++ ++  G+   +     +R  A    K  
Sbjct: 271 AMVGLPARGKTFISKKLARYLNWIGIATRVFNLGEYRRHATTAYKSH 317


>gi|71755045|ref|XP_828437.1| XPA-interacting protein [Trypanosoma brucei TREU927]
 gi|70833823|gb|EAN79325.1| XPA-interacting protein, putative [Trypanosoma brucei]
          Length = 290

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                +P VILVVG+ G GKTT++ +L     + G K      D
Sbjct: 1   MSTKPKPLVILVVGMAGTGKTTLVHRLQHYAEEKGKKTYFINLD 44


>gi|311030812|ref|ZP_07708902.1| arsenite-translocating ATPase ArsA [Bacillus sp. m3-13]
          Length = 580

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           V+  I   L   ++  +   +H   VI  +G  GVGKTT+  KL+ K+++  +KV L   
Sbjct: 309 VNPDIITELADFNQVVSDVINHNLRVIFTMGKGGVGKTTLAAKLAMKLAEKDVKVHLTTT 368

Query: 148 DTFRSAAIDQL 158
           D    AA  + 
Sbjct: 369 D---PAAHLEY 376


>gi|288918808|ref|ZP_06413153.1| LAO/AO transport system ATPase [Frankia sp. EUN1f]
 gi|288349770|gb|EFC84002.1| LAO/AO transport system ATPase [Frankia sp. EUN1f]
          Length = 310

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 84/254 (33%), Gaps = 49/254 (19%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
             I+E +   R     +V R+L          L+ + +P          V+ V G  G G
Sbjct: 1   MNILENVAAARAGSLRAVGRLLSMAEGAGRGELLAVLEPA------PVRVLGVTGPPGAG 54

Query: 124 KTTVIGKLSKKMSDAGLKVMLAA-------------GDTFRSAAIDQLKIWADRTSADFV 170
           K+T IG L     + GL+V + A             GD  R AA                
Sbjct: 55  KSTTIGALVGAYRERGLRVAVLAVDPSSPYSGGALLGDRIRMAA------HTTDPGVLIR 108

Query: 171 ---CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                      +A    A +   A   D+++++T G   +           I +    DP
Sbjct: 109 SLAARGHLGGLSAAVPAAVRVLAALGYDLVLLETVGVGQSE----------IEIAAVADP 158

Query: 228 HAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                 L VL    G +A++  +     VA    L++ K D       +  +     +PV
Sbjct: 159 -----TLVVLTPGAG-DAVQAAKAGLLEVADL--LVVNKADRDGAEQTVRELRQETDVPV 210

Query: 287 YFL--GVGEGINDL 298
             L    GEG+  L
Sbjct: 211 LTLVASRGEGLPAL 224


>gi|294464770|gb|ADE77891.1| unknown [Picea sitchensis]
          Length = 373

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 22/122 (18%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           N +   +P VI+VVG+ G GKTT++ +L      +G++  +   D     A+  L   A+
Sbjct: 41  NPNLRRKPVVIIVVGMAGSGKTTLLHRLVAYTKMSGIRGYVLNLD----PAVITLAYAAN 96

Query: 164 RTSADFVCSEIGSDAAALAYE------------------AFKQAQAKKVDVLIIDTAGRL 205
               D V  +       L                        + +A  +D +++DT G++
Sbjct: 97  IDIRDTVKYKEVMKEFNLGPNGGILTSLNLFATKFDEVIGLVEKRADDIDYVLVDTPGQI 156

Query: 206 HN 207
             
Sbjct: 157 EI 158


>gi|281416460|ref|YP_003347380.1| VirE domain protein [Enterococcus phage phiFL4A]
 gi|270209636|gb|ACZ64175.1| VirE domain protein [Enterococcus phage phiFL4A]
          Length = 810

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 32/119 (26%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I  I++  ++DD + +E+E             ++ +E L              +  V 
Sbjct: 450 EKIYGIVNRGKIDDALVQEIERN------SYDPVKEYLESL----------HWDGVPRVE 493

Query: 90  ELIHKMLMPLSKPFNWDFSHR--------------PHVILVV--GVNGVGKTTVIGKLS 132
            L+   L     PFN   + +                  ++V  G  G+GKT +  KL+
Sbjct: 494 TLLIDYLGAEDTPFNRVVTKKFLTAAVGRIFVPGIKFDYMLVTSGPQGIGKTLLPAKLA 552


>gi|163792939|ref|ZP_02186915.1| ParA protein, putative [alpha proteobacterium BAL199]
 gi|159181585|gb|EDP66097.1| ParA protein, putative [alpha proteobacterium BAL199]
          Length = 214

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 26/159 (16%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT+   L+      G +V +   D  + AA    +  +   +      E  + +  
Sbjct: 13  GTGKTTIAASLAAYWRSDGKRVAMLDTDPNQ-AATRWFRKGSSYDNV-----EAQATSDE 66

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHN------------------NSILMAGIGKMIRVL 222
            A     Q  +++ D++I+DTAG  +                   +   +    KM +V+
Sbjct: 67  HAIIGAVQDLSERADIVIVDTAGFGNQSMIYAVGIADLVLIPVMADEASLFEASKMKKVI 126

Query: 223 KRLDPHAPHSVLQ--VLDATTGQNALRQVEMFHAVAGTT 259
           +         +    VL+       +R  E      G  
Sbjct: 127 QSASALTRREIAFRTVLNRVKRATVVRHTERQLEALGLN 165


>gi|254443823|ref|ZP_05057299.1| hypothetical protein VDG1235_2061 [Verrucomicrobiae bacterium
           DG1235]
 gi|198258131|gb|EDY82439.1| hypothetical protein VDG1235_2061 [Verrucomicrobiae bacterium
           DG1235]
          Length = 436

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 27/233 (11%)

Query: 44  GVREELEDL--LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           G  E +     ++ S +G    + ++E + ++   KD+     +   +++   +      
Sbjct: 161 GTLEAVTRAISMLES-VGFD--RSLIERVRSEVDFKDIGSLPTMDLYAKICDWLRSRFPH 217

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGK-LSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                  +R      +G +GVGKT+ + K LS  +   GL   +   D+      D L++
Sbjct: 218 TDKPQLRNRRA---FIGCSGVGKTSALCKMLSSDVFIKGLAPTVLKVDSELPNPSDGLEV 274

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           + +                 LA  A +  +      L++D  G    +       G +  
Sbjct: 275 FCEIMGV------------GLARSASEVEEISDERPLLVDMPGYSLGDE------GSLEA 316

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
             + LD       + V++A      +  +       G   ++ T ++ T + G
Sbjct: 317 CRETLDTLGIEERIIVVNAAYEAELIADMLAAGESIGANKVVFTHLEETRKAG 369


>gi|317013731|gb|ADU81167.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori
           Gambia94/24]
          Length = 550

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIEKRENLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMSLESATKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L+VG  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLVGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKKHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|284032869|ref|YP_003382800.1| LAO/AO transport system ATPase [Kribbella flavida DSM 17836]
 gi|283812162|gb|ADB34001.1| LAO/AO transport system ATPase [Kribbella flavida DSM 17836]
          Length = 318

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 32/218 (14%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             ++VE            +  ++ D S L+ +++  L+       + + H++ + G  GV
Sbjct: 8   VAELVERAREGDSRSVARLISLVEDESPLLREVMAALA-----PHAGQAHIVGITGSPGV 62

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIG 175
           GK+T    L       G +V + A D        A+      ++  A             
Sbjct: 63  GKSTSTSALVSAYRATGKRVGVLAVDPSSPFSGGALLGDRVRMQDHATDAGVFIRSMASR 122

Query: 176 SDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                LA+   +A +   A   DV++++T G   +                        +
Sbjct: 123 GHLGGLAWTTPQALRVLDAAGFDVVLVETVGVGQSEVE---------------IAGMADT 167

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
            L +L    G + ++  +      G    ++ K D   
Sbjct: 168 TLVLLAPGMG-DGIQAAKAGILEVG-DIYVVNKADRDG 203


>gi|326776554|ref|ZP_08235819.1| LAO/AO transport system ATPase [Streptomyces cf. griseus XylebKG-1]
 gi|326656887|gb|EGE41733.1| LAO/AO transport system ATPase [Streptomyces cf. griseus XylebKG-1]
          Length = 320

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 73/224 (32%), Gaps = 35/224 (15%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           D+ V     +VE+    R      +  ++   S  + +++  L+       +   +V+ +
Sbjct: 2   DVDVPT---LVEQARAGRPRAVARLISLVEGASPQLREVMAALA-----PLAGHAYVVGL 53

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKI----WADRTSADF 169
            G  GVGK+T    L      AG +V + A D        A+   +I             
Sbjct: 54  TGSPGVGKSTSTSALVSAYRRAGKRVGVLAVDPSSPFSGGALLGDRIRMADHVSDPGVYI 113

Query: 170 VCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                      LA+   +A +   A   DV++++T G   +                 + 
Sbjct: 114 RSMATRGHLGGLAWSAPQAIRVLDAAGCDVVLVETVGVGQSEVE--------------IA 159

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
             A  SV+ +       + ++  +      G    ++ K D   
Sbjct: 160 SQADTSVVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 200


>gi|148263449|ref|YP_001230155.1| arsenite-activated ATPase ArsA [Geobacter uraniireducens Rf4]
 gi|146396949|gb|ABQ25582.1| arsenite efflux ATP-binding protein ArsA [Geobacter uraniireducens
           Rf4]
          Length = 583

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 92  IHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +   L P        F+++P  VI+ +G  GVGKTT+   ++ +++  G +V L   D  
Sbjct: 308 LTDPLPPPLTDLIDKFANQPGGVIMTMGKGGVGKTTLAVTIATELARQGKQVHLTTTD-- 365

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             AA   L I    +       +   +  A  +E      A       +D   R      
Sbjct: 366 -PAAHVALTIGEAPSGMRVSRVDPEVETEAYRHEVLTTVGAS------LDDEARALLEED 418

Query: 211 L---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           L         + R   ++      S + +  A TG 
Sbjct: 419 LRSPCTEEIAVFRAFAKVVADGTDSFVVIDTAPTGH 454


>gi|32476229|ref|NP_869223.1| hypothetical protein RB10061 [Rhodopirellula baltica SH 1]
 gi|32446773|emb|CAD76609.1| conserved hypothetical protein-putative containing GTP-binding
           domain [Rhodopirellula baltica SH 1]
          Length = 368

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I++ G  G GKTT+I +L+K++   G  V +   D   +  +D   + +     + V   
Sbjct: 8   IMIGGFLGAGKTTLIARLAKQLQAEGKHVCIVTND-QAAGLVDTQLLKSQGLEVNEVAGS 66

Query: 174 IGSDAAALAYEAFKQAQAKKV-DVLIIDTAG 203
                     +A ++ + ++  DV++ +  G
Sbjct: 67  CFCCNFDGLTDAMEEFENRQRPDVVLAEPVG 97


>gi|67922927|ref|ZP_00516423.1| similar to ATPases involved in chromosome partitioning
           [Crocosphaera watsonii WH 8501]
 gi|67855210|gb|EAM50473.1| similar to ATPases involved in chromosome partitioning
           [Crocosphaera watsonii WH 8501]
          Length = 195

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 27/153 (17%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  + +     +L   D  RSA                + S        
Sbjct: 11  GVGKTTTSIHLAAYLQEK-APTLLIDADRNRSA---------------LIWSREDKLPFH 54

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A +A   +  +K   +I+DT  R           G  + ++     H        LD  
Sbjct: 55  VASQAGSTSIIRKYPHIIVDTRARPEPEEFKDLADGSDLLIIPTTPNH--------LDLD 106

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
               A+ Q++  +A       ++TK+D   + G
Sbjct: 107 ATFKAVEQLQALNANFRV---LLTKVDARTKSG 136


>gi|320535524|ref|ZP_08035624.1| phosphoribulokinase / Uridine kinase family protein [Treponema
           phagedenis F0421]
 gi|320147585|gb|EFW39101.1| phosphoribulokinase / Uridine kinase family protein [Treponema
           phagedenis F0421]
          Length = 550

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 58  IGVAVAQKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           +GV+   ++   ++ KR  KD V +   +   +  + K+   + +            +L+
Sbjct: 239 VGVSAVGQL-NTIIEKRKTKDYVEIIETMQ--NNKLAKIAGQIEEKKTVKL------VLI 289

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            G +  GKTT   KLS ++   G    + + D F
Sbjct: 290 AGPSSSGKTTTAKKLSMQLRVLGFDPHIISLDDF 323


>gi|294101431|ref|YP_003553289.1| phosphoribulokinase/uridine kinase [Aminobacterium colombiense DSM
           12261]
 gi|293616411|gb|ADE56565.1| phosphoribulokinase/uridine kinase [Aminobacterium colombiense DSM
           12261]
          Length = 547

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +     +  VI++ G +G GKTT   +L  ++   GL   + + D +
Sbjct: 276 DVALREKTKVIVIAGPSGSGKTTTAKRLKIQLQVCGLNPTVISLDNY 322


>gi|170036697|ref|XP_001846199.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167879512|gb|EDS42895.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 531

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 10/133 (7%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFN----------WDFSHRPHVILVVGVNGVGKTTVIG 129
            +Q     +SE   KML P ++              ++ + PHVI +VG+   GKT +  
Sbjct: 72  EIQLCPSVMSEDTRKMLPPTTETIQCKPFPIRGERANYVNSPHVIAMVGLPARGKTYISK 131

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           KLS+ ++  G+   +     +R  A D  +        +     I    A +A E   Q 
Sbjct: 132 KLSRYLNWIGINTKVFNLGEYRRHATDAYRSHEFFRPDNEKAMAIRQHCAEMALEDVCQW 191

Query: 190 QAKKVDVLIIDTA 202
                +V + D  
Sbjct: 192 LENGGEVAVFDAT 204


>gi|296169483|ref|ZP_06851103.1| LAO/AO transport system ATPase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895749|gb|EFG75444.1| LAO/AO transport system ATPase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 292

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 80/254 (31%), Gaps = 49/254 (19%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +I + L + R     +  R+L  V       ++   +P          V+ V G  G G
Sbjct: 1   MEIADLLASARNGSPRAAGRLLSLVEGERRDEVLASIEP------GPVAVVGVTGPPGAG 54

Query: 124 KTTVIGKLSKKMSDAGLKVMLAA-------------GDTFRSAAIDQLKIWADRTSADFV 170
           K+T I  L       G +V + A             GD  R AA        + +     
Sbjct: 55  KSTTIAALVGAYRKRGSRVAVLAVDPSSPFSGGALLGDRIRMAA------HINDSDVLIR 108

Query: 171 CSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                     LA     A +   A    V++++T G   +           I +    DP
Sbjct: 109 SVATRGHLGGLAAAVPAAIRLLGAIGYRVVLLETVGVGQSE----------IEIAAVADP 158

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
                   V+      +A++  +     VA    +++ K D       +  +      P+
Sbjct: 159 T------VVILNPGAGDAVQAAKAGVLEVADI--VVVNKADRDGAQQTVRDLRAETDAPI 210

Query: 287 -YFLGV-GEGINDL 298
              +   GEG+ +L
Sbjct: 211 VSLVADRGEGVTEL 224


>gi|295700996|ref|YP_003608889.1| type VI secretion ATPase, ClpV1 family [Burkholderia sp. CCGE1002]
 gi|295440209|gb|ADG19378.1| type VI secretion ATPase, ClpV1 family [Burkholderia sp. CCGE1002]
          Length = 910

 Score = 44.8 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 25/207 (12%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +     + ++L  +   +D ++  +   V      +          D      V L+VG 
Sbjct: 597 LHTVLYLQDKLAERVVGQDEALDAIARRVRTFRADL---------DDPGKPVGVFLLVGP 647

Query: 120 NGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVCSEIGSD 177
           +GVGKT T    L+  +      ++      F+ A ++  LK            +  G  
Sbjct: 648 SGVGKTETACA-LADMLYGGERNMITVNMSEFQEAHSVSGLK-----------GAPPGYV 695

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD--PHAPHSVLQ 235
                    +  + +   V+++D   + H + + +        V++  +  P    + L 
Sbjct: 696 GYGRGGVLTEAVRRRPYSVVLLDEMEKAHPDVLELFFQVFDKGVMEDGEGVPIDFKNTLI 755

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLI 262
           +L +   Q+ + +            LI
Sbjct: 756 LLTSNAAQDVITEASRGGRRPPPDELI 782


>gi|212529282|ref|XP_002144798.1| LON domain serine protease, putative [Penicillium marneffei ATCC
           18224]
 gi|210074196|gb|EEA28283.1| LON domain serine protease, putative [Penicillium marneffei ATCC
           18224]
          Length = 921

 Score = 44.8 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 22/127 (17%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGV--REELEDLLIRSD--------IGVA-------VA 63
             +T  KL        + ++LDD     E+++  L+           + V        V+
Sbjct: 366 LKTTEDKLGSDALQ-RARKQLDDDHYGLEKIKKRLLEYLAVLKLKQSVNVEIERQIAQVS 424

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +++          KD  +  +     E++   L  L      D   +  ++L+VG  G G
Sbjct: 425 EQLTASDKETEKEKDAEITTLSQPEKEVLETKLHILKSKRTVD---KSPILLLVGPPGTG 481

Query: 124 KTTVIGK 130
           K T + K
Sbjct: 482 K-TSLAK 487


>gi|254578946|ref|XP_002495459.1| ZYRO0B11880p [Zygosaccharomyces rouxii]
 gi|238938349|emb|CAR26526.1| ZYRO0B11880p [Zygosaccharomyces rouxii]
          Length = 605

 Score = 44.8 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 19/143 (13%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K+  +    ++ L DV +++  ML    K   +     P ++L+ G +G  K+T   KL+
Sbjct: 53  KKLEEVAIHKKKLQDVCQILESML----KSSTYGIDDGPRILLMTGPSGCSKSTTTYKLA 108

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +++              +R +    L+  +DR  +  V      +      EA K  +  
Sbjct: 109 EELVPK-----------YRGSGFQMLR--SDRKGSHVVEFVETDNFQEFLVEA-KYLRGP 154

Query: 193 KVDVLII-DTAGRLHNNSILMAG 214
            + V++I D     H ++     
Sbjct: 155 NLSVVLIEDLPNIFHTDTRHAFQ 177


>gi|327542323|gb|EGF28810.1| cobalamin synthesis protein P47K [Rhodopirellula baltica WH47]
          Length = 368

 Score = 44.8 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I++ G  G GKTT+I +L+K++   G  V +   D   +  +D   + +     + V   
Sbjct: 8   IMIGGFLGAGKTTLIARLAKQLQAEGKHVCVVTND-QAAGLVDTQLLKSQGLEVNEVAGS 66

Query: 174 IGSDAAALAYEAFKQAQAKKV-DVLIIDTAG 203
                     +A ++ + ++  DV++ +  G
Sbjct: 67  CFCCNFDGLTDAMEEFENRQRPDVVLAEPVG 97


>gi|219964523|gb|ACL68353.1| ArsA [Bacillus sp. UWC]
          Length = 588

 Score = 44.8 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 13/150 (8%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA-ID 156
            L K      + +P +I  +G  GVGKTTV   ++ ++++ G++V L   D    AA I 
Sbjct: 313 DLEKMIEDYVARKPKIIFAMGKGGVGKTTVASYIALRLAEEGIRVHLTTTD---PAAHIS 369

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MA 213
                 ++ +      +   +      E   +A     +       G       L     
Sbjct: 370 WTFGEEEQEAVTVSRIDPKVEIFNYEAEVLAKASETMNED------GLAFVKEDLASPCT 423

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
               + +    L       V+ +  A TG 
Sbjct: 424 EEIAVFKAFANLVETHQDEVIIIDTAPTGH 453


>gi|212224855|ref|YP_002308091.1| cysC adenylylsulfate kinase [Thermococcus onnurineus NA1]
 gi|212009812|gb|ACJ17194.1| cysC adenylylsulfate kinase [Thermococcus onnurineus NA1]
          Length = 181

 Score = 44.8 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            +   I + G +G GKTT+  KL+KK+ + G +V +  GDT R
Sbjct: 8   EKGFTIWLTGPSGAGKTTLAVKLAKKLREMGYRVEILDGDTIR 50


>gi|168334665|ref|ZP_02692805.1| cobalamin synthesis protein, P47K [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 324

 Score = 44.8 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 53/165 (32%), Gaps = 17/165 (10%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE-IGS 176
           G  G GKTT I K +  + + G K+++   + F  A ID   +  +      +    +  
Sbjct: 8   GFLGAGKTTFITKYALYLREFGEKILIIENE-FGLAGIDGAFLRENELEVTEISGGCVCC 66

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM-------------AGIGKMIRVLK 223
                      +A  +  D +II+ +G  + ++                  I  +++   
Sbjct: 67  TQKEKLIAFILEAVQQGFDRVIIEPSGIYNLDTFFSLWNNPQIAKNCILNSIVTIVKPDF 126

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI--MTKM 266
                  +  + +    +    +      +  A     I  +TK 
Sbjct: 127 MKFATEAYEHIFLSHFYSTGAIVVSDTQSYTEAEIDSTIIDLTKF 171


>gi|154174002|ref|YP_001407724.1| cell division protein FtsH [Campylobacter curvus 525.92]
 gi|112803610|gb|EAU00954.1| cell division protein FtsH [Campylobacter curvus 525.92]
          Length = 648

 Score = 44.8 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G+  A+K++     K    DV+      +  + I   L    K  N   +  P  IL+V
Sbjct: 157 LGIGSAKKLINSEKPKVKFDDVAGVEEAKEEVQEIVDYLKSPDKYLNLG-AKIPKGILLV 215

Query: 118 GVNGVGKT 125
           G  G GKT
Sbjct: 216 GPPGTGKT 223


>gi|14521377|ref|NP_126853.1| adenylylsulfate kinase [Pyrococcus abyssi GE5]
 gi|7387598|sp|P56858|CYSC_PYRAB RecName: Full=Probable adenylyl-sulfate kinase; AltName: Full=APS
           kinase; AltName: Full=ATP adenosine-5'-phosphosulfate
           3'-phosphotransferase; AltName:
           Full=Adenosine-5'-phosphosulfate kinase
 gi|5458595|emb|CAB50083.1| cysC adenylylsulfate kinase (EC 2.7.1.25) APS kinase [Pyrococcus
           abyssi GE5]
          Length = 174

 Score = 44.8 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             I + G +G GKTT+  KL+KK+ + G KV +  GDT R
Sbjct: 4   FTIWLTGPSGAGKTTLAVKLAKKLREMGYKVEILDGDTIR 43


>gi|16332053|ref|NP_442781.1| hypothetical protein slr0929 [Synechocystis sp. PCC 6803]
 gi|1001365|dbj|BAA10852.1| slr0929 [Synechocystis sp. PCC 6803]
          Length = 195

 Score = 44.8 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 29/154 (18%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  +     + +L   D  RSA I     WA      F           
Sbjct: 11  GVGKTTTAVHLAAYLQ-QKDQTLLIDADRNRSALI-----WAREEKLPFY---------- 54

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A +A   A  +K   +++DT      +              + L   +   ++      
Sbjct: 55  VASQAGSTALIRKYPHIVVDTRAMPELDE------------FRDLAEGSDLLIIPTTPNH 102

Query: 241 TGQNALRQVEMFHAVAGTTGLI-MTKMDGTARGG 273
              +A  +     A       I +TK+D   R G
Sbjct: 103 LDLDATLKAAEQLASLKVNYKILLTKVDARTRSG 136


>gi|296114398|ref|ZP_06833052.1| ATPase AAA-2 domain protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295979159|gb|EFG85883.1| ATPase AAA-2 domain protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 422

 Score = 44.8 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 49/126 (38%), Gaps = 20/126 (15%)

Query: 12  SWIRKL-TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   +L  KG       + + +  + +   L++ +  E ++ +I +       +++   L
Sbjct: 68  NRAERLARKGLRRRRGWMMDVLARLTNRSALEEMLAREQKETIIDA-------EELAASL 120

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIG 129
             +   +D           ++   +   L +        +P  I L+ G  G GKT +  
Sbjct: 121 RARVIGQD-----------QVCEDIAAQLRRRLALHVRGKPVGIFLLAGPPGTGKTYLAK 169

Query: 130 KLSKKM 135
           +L++++
Sbjct: 170 QLARQL 175


>gi|308182460|ref|YP_003926587.1| cell division protein (ftsH) [Helicobacter pylori PeCan4]
 gi|308064645|gb|ADO06537.1| cell division protein (ftsH) [Helicobacter pylori PeCan4]
          Length = 550

 Score = 44.8 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 83/265 (31%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + ++ E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMSIEKRENLSKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMNLESAHKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEAKVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|197336697|ref|YP_002158784.1| arsenical pump-driving ATPase [Vibrio fischeri MJ11]
 gi|197313949|gb|ACH63398.1| arsenical pump-driving ATPase [Vibrio fischeri MJ11]
          Length = 582

 Score = 44.5 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              +  +I+++G  GVGKTT+   ++ K+++ GL V L   D    AA  Q  + ++ T 
Sbjct: 324 AKQKHGLIMLMGKGGVGKTTMAAAIASKLAEQGLDVHLTTSD---PAAHLQFTLNSEDTK 380

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                 +  ++         K+  A       +D  GR      L +   + I V + 
Sbjct: 381 FTVSKIDPAAETTRYREAILKEKGAS------LDEDGRKLLEEDLRSPCTEEIAVFQA 432


>gi|11498887|ref|NP_070118.1| hypothetical protein AF1289 [Archaeoglobus fulgidus DSM 4304]
 gi|3915402|sp|O28980|Y1289_ARCFU RecName: Full=Putative GTPase AF_1289
 gi|2649291|gb|AAB89957.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 346

 Score = 44.5 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 21/161 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           ++IVE LL+            + +      +++  +     +  + R HV+ + G  GVG
Sbjct: 4   EEIVEGLLSGNRRALARAITYVENEYPESKEIMRQI-----FAKTGRAHVVGLTGFPGVG 58

Query: 124 KTTVIGKLSKKMSDAGLKVMLAA-------------GDTFRSAAIDQLKIWADRTSADFV 170
           K+T++ KL+++    G KV + A             GD  R   +D  K         F 
Sbjct: 59  KSTLVSKLTEEFRRRGKKVGIIAIDPGSPFTGGALLGDRLRLDGMDSRKQLWTDPGIFFR 118

Query: 171 CSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNN 208
                  A  LA    +  +   A   DV++++T G   + 
Sbjct: 119 SMSSRGRAGGLAAKTGDVVRLLDAFGFDVILVETVGAGQSE 159


>gi|158300659|ref|XP_320522.4| AGAP012010-PA [Anopheles gambiae str. PEST]
 gi|157013267|gb|EAA00451.4| AGAP012010-PA [Anopheles gambiae str. PEST]
          Length = 468

 Score = 44.5 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           ++ + PHVI +VG+   GKT +  KLS+ ++  G+   +     +R  A D  +      
Sbjct: 31  NYVNSPHVIAMVGLPARGKTYISKKLSRYLNWIGINTKVFNLGEYRRHATDAYRSHEFFR 90

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             +     I    A LA E          +V + D      +   ++  I    
Sbjct: 91  PDNEEAMAIRQHCAELALEDVCNWLENGGEVAVFDATNSTRDRRQMIREIVVKK 144


>gi|87308216|ref|ZP_01090358.1| hypothetical protein DSM3645_21502 [Blastopirellula marina DSM
           3645]
 gi|87289298|gb|EAQ81190.1| hypothetical protein DSM3645_21502 [Blastopirellula marina DSM
           3645]
          Length = 374

 Score = 44.5 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +++ G  G GKTT IG+L++   D GL V +   D
Sbjct: 14  VMIGGFLGAGKTTTIGRLAQHYRDQGLNVGIVTND 48


>gi|315230821|ref|YP_004071257.1| ArgK-like periplasmic protein kinase [Thermococcus barophilus MP]
 gi|315183849|gb|ADT84034.1| ArgK-like periplasmic protein kinase [Thermococcus barophilus MP]
          Length = 319

 Score = 44.5 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 11/152 (7%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++ L+ +    D      L  + E   +    + K   + ++ + ++I + G  G GK+T
Sbjct: 2   IDNLIERMLKGDKKATARLITLVENDEEKAREIVKKI-YKYTGKAYIIGITGPPGSGKST 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSEIGSDAA 179
           ++ KL K+  + GL V + A D    F   A+      ++  +                 
Sbjct: 61  LLDKLIKQARNEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLG 120

Query: 180 ALA---YEAFKQAQAKKVDVLIIDTAGRLHNN 208
            LA    +A K   A   DV+ ++T G     
Sbjct: 121 GLAKATNDAIKVLDAYGCDVIFVETVGVGQIE 152


>gi|294785774|ref|ZP_06751062.1| lipid A export ATP-binding/permease protein MsbA [Fusobacterium sp.
           3_1_27]
 gi|294487488|gb|EFG34850.1| lipid A export ATP-binding/permease protein MsbA [Fusobacterium sp.
           3_1_27]
          Length = 583

 Score = 44.5 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPLSKP 102
           +L+D L  +D    V +   E++ T  + + V     + D+               + K 
Sbjct: 305 DLQDSLPSAD---RVVEIFDEKVETDVFGEAVEFNEKIQDIKFENVNYKYDDSNEYVLKN 361

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-------AGLKVMLAAGDTFR 151
            N D      +I  VG +G GKTT++  L++  +         G+ +     DT+R
Sbjct: 362 INLDVKAG-EIIAFVGKSGSGKTTLVNLLARFFNTDEGKITVNGVNIKNIHLDTYR 416


>gi|91788036|ref|YP_548988.1| arginine/ornithine transport system ATPase [Polaromonas sp. JS666]
 gi|91697261|gb|ABE44090.1| LAO/AO transport system ATPase [Polaromonas sp. JS666]
          Length = 345

 Score = 44.5 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD- 148
           EL+  +L    K F    S         GV GVGK+T I  L   +   G +V +   D 
Sbjct: 39  ELLTALLPYTGKAFRLGIS---------GVPGVGKSTFIEVLGLYLIAQGHRVAVLTIDP 89

Query: 149 --TFRSAAI-------DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             T    +I       ++L +           S      A    EA    +A   DV+I+
Sbjct: 90  SSTVSGGSILGDKTRMEKLSVHERAYIRPSPSSGTLGGVAEKTREAMLVCEAAGYDVVIV 149

Query: 200 DTAGRLHNNSILMAGIGKMI-----------RVLKRLDPHAPHSVLQV---LDATTGQNA 245
           +T G   + + +       +           + +K+        V+     LDA     A
Sbjct: 150 ETVGVGQSETAVANMTDMFVLMQLPNAGDDLQAIKKGVMELADLVIINKADLDADAAMRA 209

Query: 246 LRQVEMFHAVAGT 258
             Q+     + G 
Sbjct: 210 EAQITSAMRLFGL 222


>gi|121594397|ref|YP_986293.1| arginine/ornithine transport system ATPase [Acidovorax sp. JS42]
 gi|120606477|gb|ABM42217.1| LAO/AO transport system ATPase [Acidovorax sp. JS42]
          Length = 321

 Score = 44.5 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 48/129 (37%), Gaps = 19/129 (14%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD- 148
           EL+  +L    + F    S         GV GVGK+T I  L   +   GLKV + A D 
Sbjct: 21  ELLTALLPHTGRAFRLGIS---------GVPGVGKSTFIEALGLHLIAQGLKVAVLAIDP 71

Query: 149 --TFRSAAI-------DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             T    +I       + L +  D        S      A    EA    +A   DV+II
Sbjct: 72  SSTVSGGSILGDKTRMEHLSVHPDAYIRPSPSSGTLGGVAEKTREAMLVCEAAGYDVVII 131

Query: 200 DTAGRLHNN 208
           +T G   + 
Sbjct: 132 ETVGVGQSE 140


>gi|258543559|ref|YP_003188992.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634637|dbj|BAI00613.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637693|dbj|BAI03662.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640747|dbj|BAI06709.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643802|dbj|BAI09757.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646857|dbj|BAI12805.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649910|dbj|BAI15851.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652900|dbj|BAI18834.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655954|dbj|BAI21881.1| Clp protease ATP-binding subunit ClpA [Acetobacter pasteurianus IFO
           3283-12]
          Length = 427

 Score = 44.5 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 20/124 (16%)

Query: 15  RKL-TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            KL  KG       + + +  + +   L++ +  E  +  I +       +++   L  +
Sbjct: 71  EKLARKGLLRRRGFIMDVLARLTNRAALEEMMAREQRETTIDA-------EELAANLRAR 123

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLS 132
              +D           ++   + + L +        +P  I L+ G  G GKT +  +L+
Sbjct: 124 VIGQD-----------QVCEDVAVQLRRRLALQVRGKPVGIFLLAGPPGTGKTYLAKQLA 172

Query: 133 KKMS 136
           +++ 
Sbjct: 173 RQLE 176


>gi|99080221|ref|YP_612375.1| urease accessory protein UreG [Ruegeria sp. TM1040]
 gi|99036501|gb|ABF63113.1| urease accessory protein UreG [Ruegeria sp. TM1040]
          Length = 213

 Score = 44.5 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 35/196 (17%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKIWADRTSAD 168
           G  G GKTT++ +L++ + D    + +   D +         R   + Q ++    T   
Sbjct: 18  GPVGAGKTTLMAELARALKDH-HSIGVITNDIYTQEDAEALMRQQILPQDRVIGVETGGC 76

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
              +     +  LA  A  Q +  +V++++I++ G       L A             P 
Sbjct: 77  PHTAIREDASINLAAVAEMQNRHPEVEIVLIESGG-----DNLSATFS----------PE 121

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI------VVTH 282
                L V+D   G+   R  +   A+  +  LI+ K D     G  + +       + +
Sbjct: 122 LADVTLYVIDVAAGEEIPR--KGGPAITRSDLLIINKTDLAPHVGASLEVMERDAKRMRN 179

Query: 283 KIPVYFLGV--GEGIN 296
            +P  F  +  GEG++
Sbjct: 180 GLPFAFTALRHGEGVD 195


>gi|328947999|ref|YP_004365336.1| ATPase AAA [Treponema succinifaciens DSM 2489]
 gi|328448323|gb|AEB14039.1| AAA ATPase [Treponema succinifaciens DSM 2489]
          Length = 550

 Score = 44.5 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
                ++L+ G +  GKTT   KL+ ++   G K  + + D++
Sbjct: 282 KKSARIVLIAGPSSSGKTTTSKKLALQLEAIGYKPKVISLDSY 324


>gi|237741615|ref|ZP_04572096.1| phospholipid-lipopolysaccharide ABC transporter [Fusobacterium sp.
           4_1_13]
 gi|229429263|gb|EEO39475.1| phospholipid-lipopolysaccharide ABC transporter [Fusobacterium sp.
           4_1_13]
          Length = 583

 Score = 44.5 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPLSKP 102
           +L+D L  +D    V +   E++ T  + + V     + D+               + K 
Sbjct: 305 DLQDSLPSAD---RVVEIFDEKVETDVFGEAVEFNEKIQDIKFENVNYKYDDSNEYVLKN 361

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-------AGLKVMLAAGDTFR 151
            N D      +I  VG +G GKTT++  L++  +         G+ +     DT+R
Sbjct: 362 INLDVKAG-EIIAFVGRSGSGKTTLVNLLARFFNTDEGKITVNGVNIKNIHLDTYR 416


>gi|329113270|ref|ZP_08242053.1| Chaperone protein ClpB [Acetobacter pomorum DM001]
 gi|326697411|gb|EGE49069.1| Chaperone protein ClpB [Acetobacter pomorum DM001]
          Length = 427

 Score = 44.5 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 20/124 (16%)

Query: 15  RKL-TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            KL  KG       + + +  + +   L++ +  E  +  I +       +++   L  +
Sbjct: 71  EKLARKGLLRRRGFIMDVLARLTNRAALEEMMAREQRETTIDA-------EELAANLRAR 123

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLS 132
              +D           ++   +   L +        +P  I L+ G  G GKT +  +L+
Sbjct: 124 VIGQD-----------QVCEDVAAQLRRRLALQVRGKPVGIFLLAGPPGTGKTYLAKQLA 172

Query: 133 KKMS 136
           +++ 
Sbjct: 173 RQLE 176


>gi|254458286|ref|ZP_05071712.1| ATP/GTP-binding protein [Campylobacterales bacterium GD 1]
 gi|207085122|gb|EDZ62408.1| ATP/GTP-binding protein [Campylobacterales bacterium GD 1]
          Length = 368

 Score = 44.5 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 81/238 (34%), Gaps = 34/238 (14%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV- 117
              VAQ+I+++   +  A   S  +   +  +     +    KP + + + +    L+V 
Sbjct: 48  APEVAQQIIDDATAELKAVGASNVKCNINAPK-----MPEAPKPKSKNIAPQVKNFLMVS 102

Query: 118 -GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
            G  GVGK+T    ++  ++  G KV L   D +                   V  E+  
Sbjct: 103 SGKGGVGKSTTSVNIAIALAAQGKKVGLLDADIYGPN-------IPRMMGVSDVKPEVNG 155

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +            +A  ++++   + G L      LM     +++ +++       S L 
Sbjct: 156 NK-------VLPIKAYGIEMM---SMGSLMEEGQSLMWRGAMIMKAIEQFLRDILWSELD 205

Query: 236 VLDATTGQNALRQVEMFHAVAGTT-GLIMT-----KMDGTARGGGLIPIVVTHKIPVY 287
           VL                     T GL++T      +D + R    + +     IP+ 
Sbjct: 206 VLVIDMPPGTGDAQLTLAQSVPVTAGLVVTTPQAVSIDDSRR---SLDMFRKLNIPIA 260


>gi|150391375|ref|YP_001321424.1| phosphoribulokinase/uridine kinase [Alkaliphilus metalliredigens
           QYMF]
 gi|149951237|gb|ABR49765.1| phosphoribulokinase/uridine kinase [Alkaliphilus metalliredigens
           QYMF]
          Length = 574

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +      +     L  K +  ++     +   +  VIL+ G    GKTT   +L+ ++  
Sbjct: 277 EREEGEFIRIAEALHEKKIAEIADQITENIDRK-RVILIAGPTSSGKTTFSKRLAIQLKV 335

Query: 138 AGLKVMLAAGDTF 150
            GLK +  + D +
Sbjct: 336 NGLKPIPISLDDY 348


>gi|195446786|ref|XP_002070923.1| GK25408 [Drosophila willistoni]
 gi|194167008|gb|EDW81909.1| GK25408 [Drosophila willistoni]
          Length = 537

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 12/107 (11%)

Query: 67  VEELLTKR-YAKDVSVQRVLYDVSELIHKMLMP-----LSKPFNWDFSHR------PHVI 114
           + +L      A +  +      +S+ + K+L P     ++KPF             PHVI
Sbjct: 18  LNQLKKTADLAIENELHVCPSVMSDELRKLLPPTSETVMTKPFPIRGERTIADCTTPHVI 77

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
            +VG+   GKT +  KL++ ++  G+   +     +R  A    K  
Sbjct: 78  AMVGLPARGKTFISKKLARYLNWIGIATRVFNLGEYRRHATTAYKSH 124


>gi|89901576|ref|YP_524047.1| arginine/ornithine transport system ATPase [Rhodoferax
           ferrireducens T118]
 gi|89346313|gb|ABD70516.1| LAO/AO transport system ATPase [Rhodoferax ferrireducens T118]
          Length = 352

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 71/233 (30%), Gaps = 38/233 (16%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLY-----DVSELIHKMLMPLSKPFNWDFSHRPH 112
           +      +       +  AK +++             EL+  +L    K F    S    
Sbjct: 20  VSADAVVQATGAQQRRAIAKSITLLESTRADHRVQADELLTALLPHTGKSFRLGIS---- 75

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRTSADF 169
                GV GVGK+T I  L   +   G +V +   D   T    +I   K   ++ S   
Sbjct: 76  -----GVPGVGKSTFIEVLGLYLIGQGHRVAVLTIDPSSTVSGGSILGDKTRMEKLSVHE 130

Query: 170 VC-------SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI--- 219
                    S      A    EA    +A   DV+I++T G   + + +       +   
Sbjct: 131 HAYIRPSPSSGTLGGVAEKTREAMLVCEAASYDVVIVETVGVGQSETAVANMTDMFVLMQ 190

Query: 220 --------RVLKRLDPHAPHSVLQV---LDATTGQNALRQVEMFHAVAGTTGL 261
                   + +K+        V+     +D      A  Q+     + G  G 
Sbjct: 191 LPNAGDDLQAIKKGVMELADLVVINKADIDPHAATRAQAQITSSLRLLGLHGN 243


>gi|268679887|ref|YP_003304318.1| ATPase AAA [Sulfurospirillum deleyianum DSM 6946]
 gi|268617918|gb|ACZ12283.1| AAA ATPase central domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 66/184 (35%), Gaps = 21/184 (11%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           I+  +  +   KDV+  + + +  E +   L   +    +     P  +L+VG  GVGKT
Sbjct: 144 IIRPVRAQVSFKDVAGIQDVKEELEEVVDFLKNPAVYKRYGIRL-PKGVLLVGPPGVGKT 202

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
                ++K ++                A   Q+ +         + S+  + A ++ +  
Sbjct: 203 M----IAKAVAGEASVPFFYQSG----ATFVQIYVGMGAKRVKELFSQAKAHAPSIIF-- 252

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                   +D   ID  GR    +        + ++L  +D     S + V+ AT   + 
Sbjct: 253 --------IDE--IDAVGRARGGTRNDEREATLNQLLTEMDGFEDSSGVIVIAATNKIDI 302

Query: 246 LRQV 249
           + + 
Sbjct: 303 IDEA 306


>gi|163785212|ref|ZP_02179890.1| flagellar biosynthesis protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879517|gb|EDP73343.1| flagellar biosynthesis protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 53

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           K+D +A  G ++ I V  K+P+ +L +G+ +  D++    K  +    
Sbjct: 1   KIDESATPGLIVNIAVKTKVPITYLSIGQRVPEDIKILTPKLLANYFL 48


>gi|311031008|ref|ZP_07709098.1| arginine/ornithine transport system ATPase [Bacillus sp. m3-13]
          Length = 341

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 72/216 (33%), Gaps = 36/216 (16%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +  +L       + +  R  +   E+I +++    +      S         GV G GK+
Sbjct: 30  VRSDLAQAITLVESNATRHFHKSQEIIQEIMPSTGRSVRIGIS---------GVPGAGKS 80

Query: 126 TVIGKLSKKMSDAGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIG 175
           T I      + + G KV + A D  + ++          ++QL             S   
Sbjct: 81  TFIEAFGLYLCEQGHKVAVLAVDPSSSKTGGSILGDKTRMEQLARHPQAFIRPSPSSGTL 140

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
                   E+    +A   DV++++T G   + +I+   +   +              L 
Sbjct: 141 GGVHMKTRESILLCEAAGYDVILVETVGVGQSEAIVRDMVDFFL--------------LL 186

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           VL      + L+ ++          +++ K DG  +
Sbjct: 187 VLTGA--GDELQGMKKGIMEL-VDAIVVNKADGDNK 219


>gi|222624782|gb|EEE58914.1| hypothetical protein OsJ_10558 [Oryza sativa Japonica Group]
          Length = 882

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 18/101 (17%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIG--VAVAQKIVEELLT---------KRYAKDVSVQRV 84
           ++++ L  GV EEL       D+   + +  ++V+  L          K   + V+ ++ 
Sbjct: 254 VTNKLLCQGVLEEL-------DVSKRLMLTLELVKRELEITKLQQSIAKAIEEKVTGEQR 306

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            Y ++E +  +   L    +   +    +I + G  GVGKT
Sbjct: 307 RYLLNEQLKAIKKELGLETDDKTALSGKIICLCGPPGVGKT 347


>gi|212224168|ref|YP_002307404.1| Hypothetical ATP-binding protein [Thermococcus onnurineus NA1]
 gi|212009125|gb|ACJ16507.1| Hypothetical ATP-binding protein [Thermococcus onnurineus NA1]
          Length = 269

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           ILV G  GVGKTT    L+  ++D G  V+    D+ 
Sbjct: 3   ILVAGKGGVGKTTTTALLAHIIADKGYNVLTLDTDSV 39


>gi|32267004|ref|NP_861036.1| putative ATP/GTP-binding protein [Helicobacter hepaticus ATCC
           51449]
 gi|32263056|gb|AAP78102.1| putative ATP/GTP-binding protein [Helicobacter hepaticus ATCC
           51449]
          Length = 367

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 25/232 (10%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV--GVNG 121
           Q+I+E+L  +   K  SV +      E+      P  +P   + +      ++V  G  G
Sbjct: 51  QEIIEKLRQEISQKLESVLQGATLHLEINSPKPAPQPQPKTKNLAPHIKHFVMVSSGKGG 110

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGK+T    L+  ++  G KV L   D +       L + A++   D    E       L
Sbjct: 111 VGKSTSSVNLAIALAQQGKKVGLLDADIYGPNIPRMLGLNANKAQVD----ESQKKLIPL 166

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
                +         ++ D          L+     ++R ++++      S L VL    
Sbjct: 167 KAFGVEMMSMG----VLYD------EGQSLIWRGPMIMRAIEQMLTDVIWSNLDVLVIDM 216

Query: 242 GQNALRQVEMFHAVAGTT-GLIMT-----KMDGTARGGGLIPIVVTHKIPVY 287
                            + G+I+T      +D +AR    + +    K+P+ 
Sbjct: 217 PPGTGDAQLTLAQSVPVSAGVIVTTPQKVSLDDSAR---SLDMFDKLKVPIA 265


>gi|222624804|gb|EEE58936.1| hypothetical protein OsJ_10603 [Oryza sativa Japonica Group]
          Length = 423

 Score = 44.1 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTV 127
            +        V         SE +   +  LS  P   +F  +P +I+V+G+ G GKTT 
Sbjct: 37  RVTEASVLPPVPTDAKGKGKSEELADSIGSLSIGPERTNFKKKPVIIIVIGMAGTGKTTF 96

Query: 128 IGKLSKKMSDAGLKVMLAAG----------------DTFRSAAIDQLKIWADRTSADFVC 171
           + +L      + ++  +                   DT R   +  +K +    +   + 
Sbjct: 97  MHRLVCHTQASNMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEV--MKEYGLGPNGGILT 154

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           S            +  + +A ++D +++DT G++  
Sbjct: 155 SLNLFSTKFDEVISVIERRADQLDYVLVDTPGQIEI 190


>gi|84516806|ref|ZP_01004164.1| hypothetical protein SKA53_06502 [Loktanella vestfoldensis SKA53]
 gi|84509274|gb|EAQ05733.1| hypothetical protein SKA53_06502 [Loktanella vestfoldensis SKA53]
          Length = 254

 Score = 44.1 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 14/131 (10%)

Query: 67  VEELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           ++++  K   KD++++ R +++++E++                    +I V G  G GK+
Sbjct: 31  LDKMHPKPTGKDLTIETRHVHELAEML------------LQRDAPRVIIAVAGAPGSGKS 78

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRS-AAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T   +L++++S  G + ++   D F    A+ + +    R  A       G      A +
Sbjct: 79  TFAAELARRLSARGKRGVVVPMDGFHLDNAVLEARSLLPRKGAPETFDAQGFVRLIRAIK 138

Query: 185 AFKQAQAKKVD 195
           A +   A   D
Sbjct: 139 AQEDVFAPSFD 149


>gi|213028566|ref|ZP_03343013.1| cell division protein FtsY [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 167

 Score = 44.1 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 16/42 (38%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGV 45
           ++       +  +L +    T   L  G   +   +++DD +
Sbjct: 115 EQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDL 156


>gi|256390462|ref|YP_003112026.1| LAO/AO transporter ATPase [Catenulispora acidiphila DSM 44928]
 gi|256356688|gb|ACU70185.1| LAO/AO transport system ATPase [Catenulispora acidiphila DSM 44928]
          Length = 319

 Score = 44.1 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 32/218 (14%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              +VE            +   + D S L+ +++  L       ++   +V+ + G  GV
Sbjct: 6   VTDLVERARKGDPRAVARLISHVEDGSPLLREVMAAL-----TPYAGGAYVVGLTGSPGV 60

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIG 175
           GK+T    L       G +V + A D        A+      ++  A             
Sbjct: 61  GKSTSTSALVTAFRTQGKRVGVLAVDPSSPFSGGALLGDRVRMQEHATDRDVYIRSMASR 120

Query: 176 SDAAAL---AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                L     +A +   A   DV++I+T G   +                 +   A  S
Sbjct: 121 GHLGGLSASTPQAVRVLDAAGCDVVLIETVGVGQSEVE--------------IAATADTS 166

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           V+ +       + ++  +      G    ++ K D   
Sbjct: 167 VVLLAPGM--GDGIQAAKAGILEIG-DLFVVNKADRDG 201


>gi|77919139|ref|YP_356954.1| exopolysaccharide biosynthesis protein [Pelobacter carbinolicus DSM
           2380]
 gi|77545222|gb|ABA88784.1| uncharacterized exopolysaccharide biosynthesis protein [Pelobacter
           carbinolicus DSM 2380]
          Length = 730

 Score = 44.1 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 14/116 (12%)

Query: 41  LDDGVR--EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           LD+ ++  E++E +L     GV V       ++ ++   D     V+ +    + +    
Sbjct: 468 LDNTIKDPEDVEAVL-----GVPVI-----GVVQRKRNADHLENMVVTEPQSALAESFRG 517

Query: 99  LSKPFNWDF-SHRPHVILVVG-VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           +       F  + P  IL+   V G GKTT    L+   S +  +V+L  GD  R 
Sbjct: 518 IRTAIQLSFPDNPPKKILMTSSVMGEGKTTTAANLALSTSQSNHRVLLIEGDLRRP 573


>gi|308184089|ref|YP_003928222.1| cell division protein (ftsH) [Helicobacter pylori SJM180]
 gi|308060009|gb|ADO01905.1| cell division protein (ftsH) [Helicobacter pylori SJM180]
          Length = 550

 Score = 44.1 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIERRESLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMSLESATKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFIPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L+VG  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLVGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|256069218|ref|XP_002571070.1| signal recognition particle receptor alpha subunit (sr-alpha)
           [Schistosoma mansoni]
 gi|238652045|emb|CAZ38755.1| signal recognition particle receptor alpha subunit (sr-alpha),
           putative [Schistosoma mansoni]
          Length = 85

 Score = 44.1 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-------------ADFVCSEIGSD 177
           ++  + +   +V++AA DTFRS A++QL+    + +              +      G D
Sbjct: 1   IAFWLIEKNFRVLIAACDTFRSGAVEQLRTHVRKLNYIHPADQHGGQTMVELYEQGYGRD 60

Query: 178 AAALAYEAFKQAQA 191
           AA++A  A      
Sbjct: 61  AASIARSAINYGNK 74


>gi|145551995|ref|XP_001461674.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429509|emb|CAK94301.1| unnamed protein product [Paramecium tetraurelia]
          Length = 102

 Score = 44.1 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHA-------VAGTTGLIMTKMDG-TARGGGLIPIV 279
           H P  ++ V +A  G + L Q +           + G   +I++K D    + G  + + 
Sbjct: 2   HNPDLIVFVGEALVGNDGLGQFQQEFDFNQFKGYIRGIDAIILSKFDTVDEKVGAGLSLS 61

Query: 280 VTHKIPVYFLGVGEGINDLEP 300
                 +    VG+    L+ 
Sbjct: 62  SGGDKAILLFSVGQKYRHLKK 82


>gi|196233151|ref|ZP_03131998.1| ABC transporter-related protein [Chthoniobacter flavus Ellin428]
 gi|196222795|gb|EDY17318.1| ABC transporter-related protein [Chthoniobacter flavus Ellin428]
          Length = 318

 Score = 44.1 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 43/128 (33%), Gaps = 5/128 (3%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
             + D+  L H+     +         R  +   VG NG GKTT +  L+  +      V
Sbjct: 4   ENVIDIQNLRHRYKTHQALGGVTFSVQRQSIHGFVGPNGAGKTTTLKILATLLRPQMGSV 63

Query: 143 MLAAGDTF--RSAAIDQLKIWADRTSA--DFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
            +   D F  R A   ++    D  S        E      A      K+      DVL 
Sbjct: 64  GVFGHDIFADRKAVRRRIGFMPDHFSMYRQMTVFEYLDFFGAAYGIGLKERDKIIGDVLA 123

Query: 199 I-DTAGRL 205
           + D AGR 
Sbjct: 124 LTDMAGRK 131


>gi|330466106|ref|YP_004403849.1| multidrug ABC transporter ATPase/permease [Verrucosispora maris
           AB-18-032]
 gi|328809077|gb|AEB43249.1| multidrug ABC transporter ATPase/permease [Verrucosispora maris
           AB-18-032]
          Length = 610

 Score = 44.1 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 61/176 (34%), Gaps = 29/176 (16%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TF-------RSAAIDQLKIWADRTS 166
           +VG+NG GKTT++  L++        +     D  TF       R AAI Q     +   
Sbjct: 381 IVGLNGAGKTTLVKLLARLYEPTAGTITADGVDIRTFPATAWQRRVAAIFQDFTHFELPV 440

Query: 167 ADFVCSE------IGSDAAALAYEAFKQAQAKKVDVLIIDTAG-------RLHNNSILMA 213
            D V             A  +   A ++A A   D +     G       R    + L  
Sbjct: 441 RDNVAFGAIELLAEPERADKVVRAALEKAGA--ADFVNQLPRGLETPLSRRYAGGAELSG 498

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA-----GTTGLIMT 264
           G  + I + + L      + + VLD  T    +R    F         G T ++++
Sbjct: 499 GQWQRIAIARALVAVEGGASILVLDEPTANLDVRSEVAFFERFLDLTRGVTSVVIS 554


>gi|148906521|gb|ABR16413.1| unknown [Picea sitchensis]
          Length = 423

 Score = 44.1 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 36/93 (38%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            ++L   +K  +      P V  V    G GKTT++  L    +  G K    + D F  
Sbjct: 159 RELLQHRAKFKDDAEEIPPFVFGVSAPQGSGKTTLVYALDHLFNITGRKAASISIDDFYL 218

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
            A DQ K+  +      +     + +  LA+ A
Sbjct: 219 TATDQAKLAGENAGNTLLELRGNAGSHDLAFGA 251


>gi|290978033|ref|XP_002671741.1| predicted protein [Naegleria gruberi]
 gi|284085312|gb|EFC38997.1| predicted protein [Naegleria gruberi]
          Length = 135

 Score = 44.1 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 55/163 (33%), Gaps = 30/163 (18%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
             ++ + +   ILV+G    GK++ I  L K       ++ +A+ D  R A         
Sbjct: 1   MKYNPNKKSTNILVLGPQHSGKSSTINTLCKYF---NRRIQVASCDVGRKA--------- 48

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                         D   + YE      +   +  I DTAG+     +    + ++ +++
Sbjct: 49  --------------DVGTVHYEKVHLGSSNGHEYHIFDTAGKPFEKGMDGNDVNQIQKLI 94

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             L       V   L        +++  +       +  ++TK
Sbjct: 95  HGLPTG----VNLSLSEWMNSEIVKENVVGFVFLVVSAEVLTK 133


>gi|124027685|ref|YP_001013005.1| hypothetical protein Hbut_0807 [Hyperthermus butylicus DSM 5456]
 gi|123978379|gb|ABM80660.1| hypothetical protein Hbut_0807 [Hyperthermus butylicus DSM 5456]
          Length = 107

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
              +     +PH+++V G  GVGKTTV  +L+ ++S +G KV+LA+ D
Sbjct: 5   DGLDVSAWSKPHIVIVTGKGGVGKTTVCIRLAYELSASGGKVLLASLD 52


>gi|15611341|ref|NP_222992.1| ATP-dependent zinc metallopeptidase [Helicobacter pylori J99]
 gi|4154795|gb|AAD05852.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
          Length = 550

 Score = 44.1 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIEKRESLSKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMSLESAHKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L+VG  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLVGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKKHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|284161552|ref|YP_003400175.1| iron-sulfur cluster assembly/repair protein [Archaeoglobus
           profundus DSM 5631]
 gi|284011549|gb|ADB57502.1| iron-sulfur cluster assembly/repair protein [Archaeoglobus
           profundus DSM 5631]
          Length = 273

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           EE+  K       V++   +  + + K +  +               ++ G  GVGK+TV
Sbjct: 5   EEVKEKMKFNHEEVKKKFMEGIDQLAKRMKKVKTKLA----------VMSGKGGVGKSTV 54

Query: 128 IGKLSKKMSDAGLKVMLAAGDTF 150
            G L+      G K  +   D +
Sbjct: 55  AGLLAVHYGKKGYKTGIMDCDFW 77


>gi|309362947|emb|CAP27759.2| CBR-PRX-1 protein [Caenorhabditis briggsae AF16]
          Length = 600

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           KML  L K    +  H    ++V+G NG GKTT I KL++++S  
Sbjct: 492 KMLSELDKVCRNEKRH----VMVLGGNGSGKTTFIKKLARRLSYN 532


>gi|227544184|ref|ZP_03974233.1| competence protein ComGA [Lactobacillus reuteri CF48-3A]
 gi|300908179|ref|ZP_07125645.1| competence protein comGA [Lactobacillus reuteri SD2112]
 gi|227185820|gb|EEI65891.1| competence protein ComGA [Lactobacillus reuteri CF48-3A]
 gi|300894606|gb|EFK87962.1| competence protein comGA [Lactobacillus reuteri SD2112]
          Length = 325

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            ++  V R +Y ++++    L+P        +  +  +IL  G  G GKTT + +L++++
Sbjct: 96  GRESLVIRFIYPLNDIRFNFLVPHQWEILQKYRQQRGLILFAGPMGAGKTTTMYQLARQL 155

Query: 136 SDA 138
              
Sbjct: 156 LPK 158


>gi|148543788|ref|YP_001271158.1| type II secretion system protein E [Lactobacillus reuteri DSM
           20016]
 gi|184153194|ref|YP_001841535.1| competence protein [Lactobacillus reuteri JCM 1112]
 gi|227363232|ref|ZP_03847364.1| competence protein ComGA [Lactobacillus reuteri MM2-3]
 gi|325682160|ref|ZP_08161678.1| competence protein ComGA [Lactobacillus reuteri MM4-1A]
 gi|148530822|gb|ABQ82821.1| type II secretion system protein E [Lactobacillus reuteri DSM
           20016]
 gi|183224538|dbj|BAG25055.1| competence protein [Lactobacillus reuteri JCM 1112]
 gi|227071688|gb|EEI09979.1| competence protein ComGA [Lactobacillus reuteri MM2-3]
 gi|324978804|gb|EGC15753.1| competence protein ComGA [Lactobacillus reuteri MM4-1A]
          Length = 325

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            ++  V R +Y ++++    L+P        +  +  +IL  G  G GKTT + +L++++
Sbjct: 96  GRESLVIRFIYPLNDIRFNFLVPHQWEILQKYRQQRGLILFAGPMGAGKTTTMYQLARQL 155

Query: 136 SDA 138
              
Sbjct: 156 LPK 158


>gi|259415774|ref|ZP_05739694.1| urease accessory protein UreG [Silicibacter sp. TrichCH4B]
 gi|259347213|gb|EEW58990.1| urease accessory protein UreG [Silicibacter sp. TrichCH4B]
          Length = 217

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 33/186 (17%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKIWADRTSAD 168
           G  G GKTT+  +L++ + D    + +   D +         R   + Q ++    T   
Sbjct: 18  GPVGAGKTTLTAQLARALKDH-HSIGVITNDIYTQEDAEALMRQQILPQDRVIGVETGGC 76

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
              +     +  LA  A  Q +  +V++++I++ G       L A             P 
Sbjct: 77  PHTAIREDASINLAAVAEMQKRHPEVEIVLIESGG-----DNLSATFS----------PE 121

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI------VVTH 282
                L V+D   G+   R  +   A+  +  LI+ K D     G  + +       +  
Sbjct: 122 LADVTLYVIDVAAGEEIPR--KGGPAITRSDLLIINKTDLAPHVGASLEVMERDATRMRR 179

Query: 283 KIPVYF 288
            +P  F
Sbjct: 180 GLPFVF 185


>gi|168335368|ref|ZP_02693462.1| phosphoribulokinase/uridine kinase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 528

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 19/123 (15%)

Query: 34  DIISSRRLDDGVREELED------LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           +I++ ++ +  + E  ++      +L     GV    K+ E++++    +       L  
Sbjct: 194 EILAEKKYEPQLFEVFKESKQWVRIL-----GVDTVAKLNEKIVSGEIEE-------LIR 241

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + E +H+  +         F  +  VIL+ G +  GKTT   +L  ++   G+  +L + 
Sbjct: 242 MQEALHEKKIAKIADHILSFGTK-KVILIAGPSSSGKTTFSKRLCVQLKVNGMTPVLISM 300

Query: 148 DTF 150
           D +
Sbjct: 301 DNY 303


>gi|34764134|ref|ZP_00145006.1| PHOSPHOLIPID-LIPOPOLYSACCHARIDE ABC TRANSPORTER [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886096|gb|EAA23400.1| PHOSPHOLIPID-LIPOPOLYSACCHARIDE ABC TRANSPORTER [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 420

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPLSKP 102
           +L+D L  +D    V +   E++ T  + + V     + D+               + K 
Sbjct: 305 DLQDSLPSAD---RVVEIFDEKVETDVFGEAVEFNEKIQDIKFENVNYKYDDSNEYVLKN 361

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-------AGLKVMLAAGDTFR 151
            N D      ++  VG +G GKTT++  L++  +         G+ +     DT+R
Sbjct: 362 INLDVKAG-EIVAFVGKSGSGKTTLVNLLARFFNTDEGKITVNGVNIKNIHLDTYR 416


>gi|325283982|ref|YP_004256523.1| LAO/AO transport system ATPase [Deinococcus proteolyticus MRP]
 gi|324315791|gb|ADY26906.1| LAO/AO transport system ATPase [Deinococcus proteolyticus MRP]
          Length = 323

 Score = 43.7 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 14/148 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +  A+ +++        E   + L+    P           I + GV GVGK+T I  L 
Sbjct: 16  RALARAITLIESTRPDHEAEAQALLAELGPHAGGAVR----IGLTGVPGVGKSTFIEALG 71

Query: 133 KKMSDAGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALA 182
             +++ G +V + A D  + R+          +  L +                  A   
Sbjct: 72  LWLAERGHRVAVLAVDPSSVRTGGSIMGDKTRMPGLSVHPGAFIRPSPSGGTLGGVARRT 131

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
            EA    +A   DV++++T G   + + 
Sbjct: 132 REAMTLCEAAGYDVVLVETVGVGQSETQ 159


>gi|67624173|ref|XP_668369.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54659562|gb|EAL38133.1| hypothetical protein Chro.70052 [Cryptosporidium hominis]
          Length = 385

 Score = 43.7 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              V    ++  V+ LI K L+ L      DFS +P++IL+ G +G GK+T+   L+  +
Sbjct: 140 KNKVQKNEIIEKVNNLIEKCLIHLFS----DFSGKPNIILIAGTSGSGKSTISSYLASFL 195

Query: 136 SDAGLKVMLAAGDTFR 151
                   + + DT R
Sbjct: 196 RVK----CVISTDTIR 207


>gi|320160514|ref|YP_004173738.1| phosphoribulokinase/uridine kinase family protein [Anaerolinea
           thermophila UNI-1]
 gi|319994367|dbj|BAJ63138.1| phosphoribulokinase/uridine kinase family protein [Anaerolinea
           thermophila UNI-1]
          Length = 586

 Score = 43.7 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 32/68 (47%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +  V+E +H+  +        +   +  ++L+ G +  GKTT   +++ +M   G++ 
Sbjct: 285 QDVILVAEALHEHQVAEIAEQILNRRDQVRIVLLAGPSSSGKTTTAKRIAVQMISQGIEP 344

Query: 143 MLAAGDTF 150
           +    D +
Sbjct: 345 VPIEMDNY 352


>gi|260438479|ref|ZP_05792295.1| phosphoribulokinase family protein [Butyrivibrio crossotus DSM
           2876]
 gi|292809068|gb|EFF68273.1| phosphoribulokinase family protein [Butyrivibrio crossotus DSM
           2876]
          Length = 538

 Score = 43.7 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G+    ++ E +   R  + + VQ  L +      K L  ++   + D S +   I++ 
Sbjct: 228 LGIETVGELNEAIAAGRGNELILVQEALQE------KKLADIASTISKDPSKK--FIMMA 279

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           G +  GKTT   +LS ++   G++    + D +
Sbjct: 280 GPSSSGKTTTSYRLSIQLMAHGMRPHQLSLDNY 312


>gi|332158693|ref|YP_004423972.1| adenylylsulfate kinase [Pyrococcus sp. NA2]
 gi|331034156|gb|AEC51968.1| adenylylsulfate kinase [Pyrococcus sp. NA2]
          Length = 178

 Score = 43.7 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             I + G +G GKTT+  KL+KK+ + G +V +  GDT R
Sbjct: 8   FTIWLTGPSGAGKTTLAVKLAKKLREMGYRVEILDGDTIR 47


>gi|84684391|ref|ZP_01012292.1| hypothetical protein 1099457000260_RB2654_12239 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667370|gb|EAQ13839.1| hypothetical protein RB2654_12239 [Rhodobacterales bacterium
           HTCC2654]
          Length = 714

 Score = 43.7 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 10/192 (5%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG-VNGVGKTTVI 128
           +  ++   +    +    +SE +  +   ++     +  + P+VI++   V G GKTTV 
Sbjct: 471 VKDRKKLLEYLRNKPTSAMSEAVRNLRTSVT---LTNPKNPPNVIMITSSVPGEGKTTVA 527

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+  ++  G KV+L  GD  R+   D  K          V    G  +     EA   
Sbjct: 528 ASLALNLASLGKKVLLIDGDIRRNTLSDYFKGVDTENKPGIVSLLDGDVSL---QEAVLT 584

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
                +DVL+   + +   N+  +         +K L  H  H ++         +A   
Sbjct: 585 LPDTGIDVLM---SEKSVQNAADIFASEPFSNFMKTLREHYDHVIIDTPPVLAVPDARVI 641

Query: 249 VEMFHAVAGTTG 260
                AV    G
Sbjct: 642 ARFADAVLYIVG 653


>gi|310798261|gb|EFQ33154.1| D-glycerate 3-kinase [Glomerella graminicola M1.001]
          Length = 295

 Score = 43.7 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 37/69 (53%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           +   ++ D S L    ++ L +  +     RP +I + GV GVGKTT++ KL++ ++  G
Sbjct: 4   TASCIVDDKSPLCIPFIIGLLEKHSPQRGVRPFIIGLNGVQGVGKTTLVKKLAETLTKLG 63

Query: 140 LKVMLAAGD 148
              ++ + D
Sbjct: 64  HTTLVFSID 72


>gi|323141636|ref|ZP_08076518.1| LAO/AO transport system ATPase [Phascolarctobacterium sp. YIT
           12067]
 gi|322413901|gb|EFY04738.1| LAO/AO transport system ATPase [Phascolarctobacterium sp. YIT
           12067]
          Length = 312

 Score = 43.7 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 15/155 (9%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +IV++LL             + +  +   K++  +     +  +   +VI + G  G G
Sbjct: 1   MEIVDKLLNHSRLALSKAITAVENEYDDAVKIMTEI-----YPHTGNAYVIGITGPPGAG 55

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRTSAD-------FVCSE 173
           K+T+  KL+K+    G  V + A D    +   AI   +I     +AD            
Sbjct: 56  KSTLTDKLAKEYRKRGKTVGIVAIDPTSPYSGGAILGDRIRMMDLTADEGIFVRSMATRG 115

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                +  A +A K   A  +DV+I++T G   + 
Sbjct: 116 SLGGLSQKAGDAVKLMDAFGMDVIIVETVGVGQSE 150


>gi|163747787|ref|ZP_02155127.1| urease accessory protein UreG [Oceanibulbus indolifex HEL-45]
 gi|161378929|gb|EDQ03358.1| urease accessory protein UreG [Oceanibulbus indolifex HEL-45]
          Length = 214

 Score = 43.7 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 71/197 (36%), Gaps = 35/197 (17%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKIWADRTSAD 168
           G  G GKTT+   L + + D  L V +   D +         R   + Q +I    T   
Sbjct: 14  GPVGAGKTTLTAALCRALRDR-LSVGVITNDIYTQEDAEALMRMQVLPQDRIIGVETGGC 72

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
              +     +  LA  A   A+  +V++++I++ G       L A             P 
Sbjct: 73  PHTAIREDASINLAAVAEMVARHPEVEIVLIESGG-----DNLSATFS----------PE 117

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI------PIVVTH 282
                L V+D   G+   R  +   A+  +  L++ K D     G  +         +  
Sbjct: 118 LADVTLYVIDVAAGEEIPR--KGGPAITKSDILVINKTDLAPHVGASLDVMQRDSARMRP 175

Query: 283 KIPVYFLGV--GEGIND 297
            +P  F  +  GEGI+D
Sbjct: 176 NLPTVFCALKSGEGIDD 192


>gi|161527911|ref|YP_001581737.1| adenylate kinase [Nitrosopumilus maritimus SCM1]
 gi|160339212|gb|ABX12299.1| adenylate kinase [Nitrosopumilus maritimus SCM1]
          Length = 192

 Score = 43.7 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 18/180 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT--FRSAAIDQLKIWADRTSADFVC 171
           I++VG+ GVGKTT++ K+   + D    + + +  T  F  A  + L    +        
Sbjct: 7   IVLVGIPGVGKTTLLSKIVDHIKDHQKSISVVSYGTLMFEVAKENGLNDRDELRKLPIGK 66

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            +           A ++  A   +++IIDT      +S      G    VLK + P    
Sbjct: 67  QQELQKV------AAEKIAAHTEEIVIIDT--HAFISSPEGYYPGLPEHVLKIIKPSNFV 118

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT--KMDGTARGGGLIPIVVTHKIPVYFL 289
           SV      +     +    M         + +   K +   + G +    V    PV ++
Sbjct: 119 SV------SAKPEEIYSRRMSDDTRNRDKITLANVKKELDVQSGMISACAVITGSPVKYI 172


>gi|124359737|gb|ABN06079.1| Signal peptide binding (SRP54) M-domain [Medicago truncatula]
          Length = 210

 Score = 43.7 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 295 INDLEPFVAKDFSAVITGCLD 315
           + DLEPF     +  I G  D
Sbjct: 1   MEDLEPFYPDRMAGRILGMGD 21


>gi|12846360|dbj|BAB27138.1| unnamed protein product [Mus musculus]
          Length = 103

 Score = 43.7 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 21 FASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELL 71
           A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + 
Sbjct: 3  LADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVK 57


>gi|187476785|ref|YP_784809.1| ATPase with chaperone activity [Bordetella avium 197N]
 gi|115421371|emb|CAJ47876.1| putative ATPase with chaperone activity [Bordetella avium 197N]
          Length = 872

 Score = 43.7 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 61/193 (31%), Gaps = 23/193 (11%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +     + + L  +   +D ++  +   V     ++          D      V L+VG 
Sbjct: 557 LHTVLNLEDRLRERVVGQDAALDAIARRVRTFRAEL---------DDPGKPVGVFLLVGP 607

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           +GVGKT     L+  +      ++              L  + +  S   +         
Sbjct: 608 SGVGKTETATALADILYGGERNMITIN-----------LSEYQEAHSVSGLKGAPPGYVG 656

Query: 180 ALAYEAFKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD--PHAPHSVLQV 236
                   +A + +   V+++D   + H + + +         ++  +  P    + L +
Sbjct: 657 YGKGGVLTEAVRRRPYSVVLLDEIEKAHPDVLELFFQVFDKGEMEDGEGTPIDFRNTLII 716

Query: 237 LDATTGQNALRQV 249
           L +   Q+ +   
Sbjct: 717 LTSNAAQDVITDA 729


>gi|315452779|ref|YP_004073049.1| putative Cell division protein FtsH [Helicobacter felis ATCC 49179]
 gi|315131831|emb|CBY82459.1| putative Cell division protein FtsH [Helicobacter felis ATCC 49179]
          Length = 560

 Score = 43.7 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 62/166 (37%), Gaps = 22/166 (13%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
            +V E +++++  L  P  +       P  +L+VG  GVGKT     ++K ++       
Sbjct: 168 KEVKEELYEIVDYLKNPKKYQDLKIKLPKGVLLVGPPGVGKTM----IAKALASEAKVPF 223

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
                +    A  Q+ +         + ++  + + ++ +          +D   ID  G
Sbjct: 224 FYHSGS----AFVQIYVGVGAKRVRELFAKAKAFSPSIVF----------IDE--IDAVG 267

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +   +         + ++L  +D     S + V+ AT   + + + 
Sbjct: 268 KARGHQRNDEREATLNQLLTEMDGFEESSQVIVIGATNKIDVMDEA 313


>gi|254173872|ref|ZP_04880543.1| cobyrinic Acid a,c-diamide synthase [Thermococcus sp. AM4]
 gi|214032121|gb|EEB72952.1| cobyrinic Acid a,c-diamide synthase [Thermococcus sp. AM4]
          Length = 269

 Score = 43.7 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           ILV G  GVGKTTV   L+  ++D G  V+    D+ 
Sbjct: 3   ILVAGKGGVGKTTVSALLAHILADEGYSVLCLDTDSV 39


>gi|326383494|ref|ZP_08205181.1| Anion-transporting ATPase [Gordonia neofelifaecis NRRL B-59395]
 gi|326197900|gb|EGD55087.1| Anion-transporting ATPase [Gordonia neofelifaecis NRRL B-59395]
          Length = 368

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 24/180 (13%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              +  V++  G  GVGKTT    ++   ++ G KV +   D  R          A    
Sbjct: 11  ADPKTRVVVCCGSGGVGKTTTAASMALHAAEHGRKVAVLTIDPAR--------RLAQSLG 62

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            + + +E        A EA        +D +++D   R   +  ++       R    ++
Sbjct: 63  MNELTNEPQPVPLDRAGEA----GVGTLDAMMLDM--RRTFDD-MVIEHSTPERAESIMN 115

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAV---------AGTTGLIMTKMDGTARGGGLIP 277
                +V      T    A+ ++                  +   +  +D  AR G  + 
Sbjct: 116 NSFYQTVASSFSGTQEYMAMEKLSRLLDEDRWDLIIVDTPPSRNALDFLDAPARLGSFLS 175


>gi|78485294|ref|YP_391219.1| ATP-dependent helicase HrpA [Thiomicrospira crunogena XCL-2]
 gi|78363580|gb|ABB41545.1| ATP-dependent helicase HrpA [Thiomicrospira crunogena XCL-2]
          Length = 1342

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 28/193 (14%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWDFSHRPHVILVVGVNGVG 123
           K  + L         +VQ+    V ++ +  L +   +    +      V+++ G  G G
Sbjct: 71  KFCDRLAKSV----ATVQKNQQAVPKITYDNLPVAERRDEILELIQNNQVVVIAGETGSG 126

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----------ADFVCSE 173
           KTT I K+  + +  G+   +      R AA    +  A+               F    
Sbjct: 127 KTTQIPKICLE-AGRGVFGRIGCTQPRRLAARSVAERIAEELGSSLGQLVGYQVRFHDQV 185

Query: 174 IGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                  +  +    A+ +        D +IID A     N      I  ++ +LK+L P
Sbjct: 186 HQQSLLKVMTDGILLAEIQNDPYLNQYDTIIIDEAHERSIN------IDFLLGILKKLLP 239

Query: 228 HAPHSVLQVLDAT 240
                 L +  AT
Sbjct: 240 KRRDLKLIITSAT 252


>gi|302339646|ref|YP_003804852.1| ATPase AAA [Spirochaeta smaragdinae DSM 11293]
 gi|301636831|gb|ADK82258.1| AAA ATPase [Spirochaeta smaragdinae DSM 11293]
          Length = 553

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           V+E +H   +               V+L+ G +  GKTT   KL+ ++   G   ++   
Sbjct: 265 VAEALHDKKISQIADQIAQRRDTVRVVLIAGPSSSGKTTFTKKLAIQLQVLGFNPVVIGL 324

Query: 148 -DTFRS 152
            D FR 
Sbjct: 325 DDYFRP 330


>gi|242277832|ref|YP_002989961.1| cobalamin synthesis protein P47K [Desulfovibrio salexigens DSM
           2638]
 gi|242120726|gb|ACS78422.1| cobalamin synthesis protein P47K [Desulfovibrio salexigens DSM
           2638]
          Length = 608

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 63/175 (36%), Gaps = 14/175 (8%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           + +    N+ F  RP +I++ G  G GKTT + +L +  +     V +   +  ++  +D
Sbjct: 291 VEVEGNHNYAFDKRPSLIVLSGFLGAGKTTFLNQLLEYHASRNELVAIIQNEIGQTG-VD 349

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV-DVLIIDTAGRLHNNSILMAGI 215
              +  D +  +     +    A    +  +Q + +    V++++T G       L    
Sbjct: 350 GKLLEGDDSIVELDEGCVCCTLAGNLSKGIEQLKTRFNPKVIVLETTG-------LANPF 402

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQN---ALRQVEMFHAVAGTTGLIMTKMD 267
             +  +          SV  ++DA  G                A    +I+ K D
Sbjct: 403 NILNEIETLRPLVRLDSVTTLVDAENGPQLLADSDIARNQVKAADV--IILNKCD 455


>gi|317108124|dbj|BAJ53881.1| CC-NBS-LRR type resistance-like protein [Capsicum chinense]
          Length = 1286

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 34/137 (24%)

Query: 41  LDD---GVREELEDLLIRSDIGVAVAQKIVEEL--------------LTKRYAKDVSVQR 83
           +DD    V+E+LED        +   + + +++               T+R++  +  + 
Sbjct: 116 IDDYFLNVKEKLEDT-------IETLEDLQKQIGFLGLKEHFALTKHETRRHSTSLVEES 168

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK-------KMS 136
            ++     I +++  L           P V+ +VG+ GVGKTT + K +          +
Sbjct: 169 DVFGRQNEIEELIDRLLS--KDASEKSPAVVPIVGMGGVGKTT-LAKAAYNDDKVQSHFN 225

Query: 137 DAGLKVMLAAGDTFRSA 153
                 +    D+FR  
Sbjct: 226 LTAWFCVSEPYDSFRIT 242


>gi|312261110|dbj|BAJ33560.1| CC-NBS-LRR type resistance-like protein [Capsicum chinense]
          Length = 1299

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 34/137 (24%)

Query: 41  LDD---GVREELEDLLIRSDIGVAVAQKIVEEL--------------LTKRYAKDVSVQR 83
           +DD    V+E+LED        +   + + +++               T+R++  +  + 
Sbjct: 123 IDDYFLNVKEKLEDT-------IETLEDLQKQIGFLGLKEHFALTKHETRRHSTSLVEES 175

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK-------KMS 136
            ++     I +++  L           P V+ +VG+ GVGKTT + K +          +
Sbjct: 176 DVFGRQNEIEELIDRLLS--KDASEKSPAVVPIVGMGGVGKTT-LAKAAYNDDKVQSHFN 232

Query: 137 DAGLKVMLAAGDTFRSA 153
                 +    D+FR  
Sbjct: 233 LTAWFCVSEPYDSFRIT 249


>gi|256844941|ref|ZP_05550399.1| lipid A export permease/ATP-binding protein MsbA [Fusobacterium sp.
           3_1_36A2]
 gi|256718500|gb|EEU32055.1| lipid A export permease/ATP-binding protein MsbA [Fusobacterium sp.
           3_1_36A2]
          Length = 583

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPLSKP 102
           +L+D L  +D    V +   E++ T  + + V     + D+               + K 
Sbjct: 305 DLQDSLPSAD---RVVEIFDEKVETDVFGEAVEFNEKIQDIKFENVNYKYDDSNEYVLKN 361

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-------AGLKVMLAAGDTFR 151
            N D      ++  VG +G GKTT++  L++  +         G+ +     DT+R
Sbjct: 362 INLDVKAG-EIVAFVGKSGSGKTTLVNLLARFFNTDEGKITVNGVNIKNIHLDTYR 416


>gi|160899189|ref|YP_001564771.1| arginine/ornithine transport system ATPase [Delftia acidovorans
           SPH-1]
 gi|160364773|gb|ABX36386.1| LAO/AO transport system ATPase [Delftia acidovorans SPH-1]
          Length = 373

 Score = 43.3 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 19/128 (14%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-- 148
           L+  +L      F    S         GV GVGK+T I  L   +   GL+V + A D  
Sbjct: 59  LLTALLPHTGGSFRLGIS---------GVPGVGKSTFIETLGLFLIARGLRVAVLAIDPS 109

Query: 149 -TFRSAAI-------DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            T    +I       +QL +  D        S      A    EA    +A   DV+I++
Sbjct: 110 STVSGGSILGDKTRMEQLSVHLDAYIRPSPSSGTLGGVAEKTREAMLVCEAAGYDVVIVE 169

Query: 201 TAGRLHNN 208
           T G   + 
Sbjct: 170 TVGVGQSE 177


>gi|118475562|ref|YP_891613.1| Mrp protein [Campylobacter fetus subsp. fetus 82-40]
 gi|261886475|ref|ZP_06010514.1| Mrp protein [Campylobacter fetus subsp. venerealis str. Azul-94]
 gi|118414788|gb|ABK83208.1| Mrp protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 358

 Score = 43.3 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 90/275 (32%), Gaps = 35/275 (12%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE---ELLTKRY--AKD 78
           T+ ++ E +  +I       G ++ + +     ++   +  +IV    E+ TK     + 
Sbjct: 2   TNEQILEELKKVIY-----PGFKKSIVEFGFVKEVDPDIVVEIVSAKPEIATKVKQDIES 56

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           +++ R +   +  + +         N     +  V++  G  GVGK+T    L+  ++  
Sbjct: 57  LNLDRKIIIQTPKLEEEKSNSRSGKNIAPQIKNFVMVSSGKGGVGKSTTTLNLAISLAKQ 116

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G KV L   D +       L    ++       S +G     +     +          I
Sbjct: 117 GKKVGLLDADIYGPNIPRMLGCQNEQ------PSVVGQRLKPILTHGIEMMSMG-----I 165

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           +  AG       LM     +++ + +L      S L VL                     
Sbjct: 166 LIEAG-----QGLMWRGAMIMKAITQLLNEVMWSDLDVLFLDMPPGTGDAQITLAQSVPV 220

Query: 259 TGLIMTK------MDGTARGGGLIPIVVTHKIPVY 287
           T  I         +D +AR    + +     IPV 
Sbjct: 221 TAGICVSTPQTVALDDSAR---SLDMFEKLHIPVA 252


>gi|225437320|ref|XP_002267361.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1283

 Score = 43.3 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 85/255 (33%), Gaps = 55/255 (21%)

Query: 6    VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR-----SDIGV 60
            ++SES+S+   L +G  S S  LK+ + D+++          E E  L+      SDIGV
Sbjct: 927  ISSESISYGLNLLQGIQSESKSLKKSLKDVVTEN--------EFEKKLLSDVIPPSDIGV 978

Query: 61   AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFSHRPHVILVV 117
                             D+     + D  + +  +++PL +P        +     IL+ 
Sbjct: 979  --------------TFDDIGALENVKDTLKEL--VMLPLQRPELFCKGQLTKPCKGILLF 1022

Query: 118  GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            G  G GKT     L+K ++                A  + + I     ++ +        
Sbjct: 1023 GPPGTGKTM----LAKAVATE--------------AGANFINISMSSITSKWFGEGEKYV 1064

Query: 178  AAALAYEAFKQAQAKKVDVLIIDTA-GRLHNNSILMAGIGKMIRVLKRLDP--HAPHSVL 234
             A  +  +        VD +  D+  GR  N     A        +   D         +
Sbjct: 1065 KAVFSLASKIAPSVVFVDEV--DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1122

Query: 235  QVLDATTGQNALRQV 249
             VL AT     L + 
Sbjct: 1123 LVLAATNRPFDLDEA 1137


>gi|224418490|ref|ZP_03656496.1| putative ATP/GTP-binding protein [Helicobacter canadensis MIT
           98-5491]
 gi|253827803|ref|ZP_04870688.1| putative ATP/GTP-binding protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142020|ref|ZP_07804213.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511209|gb|EES89868.1| putative ATP/GTP-binding protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131051|gb|EFR48668.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 371

 Score = 43.3 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 80/237 (33%), Gaps = 28/237 (11%)

Query: 59  GVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
              VA+ +  ++  K  A+ ++ +   +              +K  N     +  V++  
Sbjct: 48  SPEVAETLRTQITQKLNAQGITKINLDIKQPKPQAQNQKPQGTK--NLAPQIKNFVMVSS 105

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G  GVGK+T    L+  ++  G KV L   D +                      E+   
Sbjct: 106 GKGGVGKSTTSVNLAIALAQQGKKVALLDADIYGPN-------IPRMLGLQNDKPEVDQK 158

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQV 236
              L        QA  ++++   + G L++    L+     +IR ++++        L V
Sbjct: 159 LKKLIP-----LQAYGIEMI---SMGVLYDEGQSLIWRGPMIIRAIEQMLSDVLWDNLDV 210

Query: 237 ----LDATTGQNALRQVEMFHAVAGTTGLIMTK--MDGTARGGGLIPIVVTHKIPVY 287
               +   TG   L   +     AG       K  +D  AR    + +    KIPV 
Sbjct: 211 MVIDMPPGTGDAQLTLAQSVPVTAGIAVSTPQKVALDDGAR---ALDMFAKLKIPVA 264


>gi|160881194|ref|YP_001560162.1| ABC transporter related [Clostridium phytofermentans ISDg]
 gi|160429860|gb|ABX43423.1| ABC transporter related [Clostridium phytofermentans ISDg]
          Length = 593

 Score = 43.3 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDFS---HRPHVILVVGV 119
            + +E    ++   D+  +  +  +  E +        K    D S    +   I +VG+
Sbjct: 322 MEFMELPEEEKVGGDLPFEGNVDTIRFEHVTFQYPGSEKQVLKDISFEIKKGEKISIVGL 381

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           NG GKTT+I  L +       K+ +   D F
Sbjct: 382 NGAGKTTLIKLLCRLYRPTEGKIYINGHDIF 412


>gi|218247445|ref|YP_002372816.1| hypothetical protein PCC8801_2658 [Cyanothece sp. PCC 8801]
 gi|257061218|ref|YP_003139106.1| cobyrinic acid a,c-diamide synthase [Cyanothece sp. PCC 8802]
 gi|218167923|gb|ACK66660.1| conserved hypothetical protein [Cyanothece sp. PCC 8801]
 gi|256591384|gb|ACV02271.1| cobyrinic acid a,c-diamide synthase [Cyanothece sp. PCC 8802]
          Length = 195

 Score = 43.3 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 55/167 (32%), Gaps = 28/167 (16%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    LS  +       +L   D  RSA                + S        
Sbjct: 11  GVGKTTTAIHLSAYLQ-QKAPTLLIDADRNRSA---------------LIWSREDLLPFH 54

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A +A      +K   +I+DT  R           G  + ++     H        LD  
Sbjct: 55  VASQAGATNIIRKYPHIIVDTRARPEPEEFKDLADGSDLLIVPTTPNH--------LDLD 106

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG-GLIPIVVTHKIPV 286
               A+ Q+   +A       ++TK+D   + G   I ++     P+
Sbjct: 107 ATFKAVEQLTPLNANFKI---LLTKVDARTKNGREAIQLLKEANFPL 150


>gi|330991200|ref|ZP_08315152.1| Chaperone protein ClpB [Gluconacetobacter sp. SXCC-1]
 gi|329761693|gb|EGG78185.1| Chaperone protein ClpB [Gluconacetobacter sp. SXCC-1]
          Length = 424

 Score = 43.3 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 20/126 (15%)

Query: 12  SWIRKL-TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +   KL  KG       + + +  + +   L++ +  E ++ +I +       +++   L
Sbjct: 69  NRAEKLARKGIRRRRGWIMDVLARLTNRSALEEMLAREQKETVIDA-------EELAASL 121

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIG 129
             +   +D           ++   +   L +        +P  I L+ G  G GKT +  
Sbjct: 122 RARVIGQD-----------QVCEDVATQLRRRLALQVRGKPVGIFLLAGPPGTGKTYLAK 170

Query: 130 KLSKKM 135
           +L++++
Sbjct: 171 QLARQL 176


>gi|319794417|ref|YP_004156057.1| lao/ao transport system atpase [Variovorax paradoxus EPS]
 gi|315596880|gb|ADU37946.1| LAO/AO transport system ATPase [Variovorax paradoxus EPS]
          Length = 347

 Score = 43.3 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 19/143 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +         EL+  +L      F    S         GV GVGK+T I  L   + D
Sbjct: 30  ESTRTDHRAQADELLTALLPRTGNSFRLGIS---------GVPGVGKSTFIETLGLLLID 80

Query: 138 AGLKVMLAAGD---TFRSAAI-------DQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            G +V +   D   T    +I       ++L +           S      A    EA  
Sbjct: 81  KGHRVAVLTIDPSSTVSGGSILGDKTRMERLSVHERAYIRPSPSSGTLGGVAEKTREAML 140

Query: 188 QAQAKKVDVLIIDTAGRLHNNSI 210
             +A   DV+I++T G   + + 
Sbjct: 141 VCEAAGYDVVIVETVGVGQSETA 163


>gi|297743865|emb|CBI36835.3| unnamed protein product [Vitis vinifera]
          Length = 1287

 Score = 43.3 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 85/255 (33%), Gaps = 55/255 (21%)

Query: 6    VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR-----SDIGV 60
            ++SES+S+   L +G  S S  LK+ + D+++          E E  L+      SDIGV
Sbjct: 931  ISSESISYGLNLLQGIQSESKSLKKSLKDVVTEN--------EFEKKLLSDVIPPSDIGV 982

Query: 61   AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFSHRPHVILVV 117
                             D+     + D  + +  +++PL +P        +     IL+ 
Sbjct: 983  --------------TFDDIGALENVKDTLKEL--VMLPLQRPELFCKGQLTKPCKGILLF 1026

Query: 118  GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            G  G GKT     L+K ++                A  + + I     ++ +        
Sbjct: 1027 GPPGTGKTM----LAKAVATE--------------AGANFINISMSSITSKWFGEGEKYV 1068

Query: 178  AAALAYEAFKQAQAKKVDVLIIDTA-GRLHNNSILMAGIGKMIRVLKRLDP--HAPHSVL 234
             A  +  +        VD +  D+  GR  N     A        +   D         +
Sbjct: 1069 KAVFSLASKIAPSVVFVDEV--DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1126

Query: 235  QVLDATTGQNALRQV 249
             VL AT     L + 
Sbjct: 1127 LVLAATNRPFDLDEA 1141


>gi|152992606|ref|YP_001358327.1| ATP-dependent zinc metalloproteinase [Sulfurovum sp. NBC37-1]
 gi|151424467|dbj|BAF71970.1| ATP-dependent zinc metalloproteinase [Sulfurovum sp. NBC37-1]
          Length = 557

 Score = 43.3 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 21/183 (11%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           V+ L +    KDV+  + + +  E I   L    K  + D    P  +L+VG  GVGKT 
Sbjct: 149 VQALKSNVTFKDVAGIKDVKEELEEIIDFLREPQKYRDMDIRL-PKGVLLVGPPGVGKT- 206

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
                   +    +         ++S A          +             + L  +A 
Sbjct: 207 --------LISKAVAGEAGVPFFYQSGA----------SFVHIYVGMGAKRVSELFKKAK 248

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A +    +  ID  G+             + ++L  +D     S + V+ AT   + L
Sbjct: 249 QMAPSIIF-IDEIDAVGKSRGEFRNDEREATLNQLLTEMDGFEESSGVIVIGATNKIDVL 307

Query: 247 RQV 249
            + 
Sbjct: 308 DEA 310


>gi|317179319|dbj|BAJ57107.1| cell division protein [Helicobacter pylori F30]
          Length = 550

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 83/265 (31%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L++  + ELE+   
Sbjct: 93  PESMPIEKRENLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMNLENAHKNELENSFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|256545100|ref|ZP_05472466.1| phosphoribulokinase/uridine kinase family protein [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399141|gb|EEU12752.1| phosphoribulokinase/uridine kinase family protein [Anaerococcus
           vaginalis ATCC 51170]
          Length = 542

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 27/53 (50%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            L+K      ++  +++++ G +  GKTT   KL+ +++  G    + + D +
Sbjct: 265 QLNKCAKDIIANNMNIVMLAGPSSSGKTTTAKKLAIQLAVLGKDAYVISTDDY 317


>gi|322707483|gb|EFY99061.1| Uridine/cytidine kinase, putative [Metarhizium anisopliae ARSEF 23]
          Length = 294

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +  L +        RP +I + G+ GVGKTT++  L+  ++  G+  ++ + D F
Sbjct: 16  ITQLLQTHRTKSPDRPLIIGLNGMQGVGKTTLVAPLAAALNARGIHTLVFSIDDF 70


>gi|290995134|ref|XP_002680186.1| predicted protein [Naegleria gruberi]
 gi|284093806|gb|EFC47442.1| predicted protein [Naegleria gruberi]
          Length = 183

 Score = 43.3 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 31/178 (17%)

Query: 89  SELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           +++I  ML  +  +   ++ + +   ILV+G    GK++ I  L K       ++ +A  
Sbjct: 34  NKIIDLMLQKIEVENMKYNPNKKSTNILVLGPQHSGKSSTINTLGKYF---NRRIQVAIC 90

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D  R A                       D   + YE F    +   +  I DTAG+   
Sbjct: 91  DVGRKA-----------------------DVGTVHYEKFHLGSSNGHEYHIFDTAGKPFE 127

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             +    + ++ +++  L       V   L        + +  +       +  ++TK
Sbjct: 128 KGMDGNDVNQIQKLMHGLPTG----VNLSLSEWMNSEIVTENAVGFVFLVVSAEVLTK 181


>gi|320333006|ref|YP_004169717.1| plasmid partitioning protein [Deinococcus maricopensis DSM 21211]
 gi|319754295|gb|ADV66052.1| plasmid partitioning protein [Deinococcus maricopensis DSM 21211]
          Length = 221

 Score = 43.3 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 32/157 (20%)

Query: 106 DFSHRPHVILVVGV----NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
             S++    L++G+     GVGKTT    ++  ++D GL+V+LA GD  R+A+      W
Sbjct: 8   KMSNKRSGPLIIGLASLKGGVGKTTSAVHIAAHLADRGLQVLLADGDRIRTASA-----W 62

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                  F               A   A+A   D ++ID+ G   +  +L          
Sbjct: 63  GRGGRLPFKVGS-----------AAMLARAGDYDAVVIDSRGGPEDTELLD--------- 102

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
              L  ++   +L      +G + + Q        G 
Sbjct: 103 ---LAENSDQLILPTTPDLSGMDGMIQTIEVLDRHGI 136


>gi|308061639|gb|ADO03527.1| cell division protein (ftsH) [Helicobacter pylori Cuz20]
          Length = 550

 Score = 43.3 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIEKRENLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMNLESAHKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|168334359|ref|ZP_02692543.1| Molybdopterin-guanine dinucleotide biosynthesis MobB region
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 163

 Score = 43.3 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 6/144 (4%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA----IDQLKIWADRT 165
           +P+VI + GV   GKTT+I K+   ++  G KV +   D    AA     D  KI     
Sbjct: 5   KPNVIAISGVKNSGKTTLIAKIVAALASEGYKVGVIKHDGHEFAADHPGTDSHKIKMAGA 64

Query: 166 SADFVCSEIGSDAAALAYE--AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
            A  V S           E  AF+       D+ ++   G  H++   +  +    + + 
Sbjct: 65  DAVMVYSATKLMLVRNLDETVAFEDLLKYYADMDLVIVEGMKHSSLPKIEVVSNHAKAIC 124

Query: 224 RLDPHAPHSVLQVLDATTGQNALR 247
             +  A  +   V         + 
Sbjct: 125 TANVIAIAAPASVATNAANTPIID 148


>gi|307199078|gb|EFN79788.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 [Harpegnathos
           saltator]
          Length = 465

 Score = 43.3 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 3/121 (2%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           +    +F ++PHVI +VG+   GKT +  KL + ++  G+   +     +R  A    + 
Sbjct: 26  RGERANFVNKPHVIAMVGLPARGKTYISKKLCRYLNWIGISTKVFNLGEYRRHATTAYQC 85

Query: 161 WA--DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
                  +   +       A     +  +  ++   +V + D          L+  I   
Sbjct: 86  HEFFRPDNIKAMAIRT-QCAMDALNDVCQWLESGDGEVAVFDATNSTVERRQLIRDIVVH 144

Query: 219 I 219
            
Sbjct: 145 K 145


>gi|332158047|ref|YP_004423326.1| cell division inhibitor [Pyrococcus sp. NA2]
 gi|331033510|gb|AEC51322.1| cell division inhibitor [Pyrococcus sp. NA2]
          Length = 253

 Score = 43.3 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 10/129 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI+V G  G GKTT    LS   + AG +V+   GD +       L +     +  +  
Sbjct: 2   AVIVVTGRGGAGKTTTTANLSTYFAQAGYRVLAIDGDLYLPN----LGLHFALDNVKYTL 57

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
             +  +       A  + +      + +   G      +L     ++  V++ L     +
Sbjct: 58  HSVVKNPNMDPEWAIYRHEQTG---VYV-MPGSPRLEDVLGVSGQRLKDVIENLK--YKY 111

Query: 232 SVLQVLDAT 240
            V+ V   T
Sbjct: 112 PVIFVDSPT 120


>gi|307354512|ref|YP_003895563.1| ABC transporter-like protein [Methanoplanus petrolearius DSM 11571]
 gi|307157745|gb|ADN37125.1| ABC transporter related protein [Methanoplanus petrolearius DSM
           11571]
          Length = 596

 Score = 43.3 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 9/164 (5%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           ++   I +VG +G GKTT    L+     +   + +   +      +D L          
Sbjct: 384 NKNSKIAIVGSSGSGKTTTANLLALLYKPSSGGIFIDGVNLDEINPVDYLHHLGYIGQET 443

Query: 169 FVCSEIG--------SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           FV  +                  EA K A A    +   D    +  +  L    G+  R
Sbjct: 444 FVYHDTIRENIRFGLDCTDDEIIEAAKLADAHDFIMASSDGYDTIIGDQGLKLSGGQRQR 503

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           +           +L + +AT+  + + + +            MT
Sbjct: 504 IAIARIILRKPDILLLDEATSSLDNISE-QKIMESVEILSQNMT 546


>gi|121605281|ref|YP_982610.1| arginine/ornithine transport system ATPase [Polaromonas
           naphthalenivorans CJ2]
 gi|120594250|gb|ABM37689.1| LAO/AO transport system ATPase [Polaromonas naphthalenivorans CJ2]
          Length = 334

 Score = 43.3 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 71/218 (32%), Gaps = 38/218 (17%)

Query: 70  LLTKRYAK-----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +  AK     + +         EL+  +L    + F    S         GV GVGK
Sbjct: 11  VQRRAIAKAITLLESTRADHRAQADELLTALLPHTGQSFRLGIS---------GVPGVGK 61

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRTSA-------DFVCSEI 174
           +T I  L   +   G +V +   D   T    +I   K   ++ S+           S  
Sbjct: 62  STFIEVLGLYLIKQGHRVAVLTIDPSSTVSGGSILGDKTRMEKLSSEERAYIRPSPSSGT 121

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-----------RVLK 223
               A    EA    +A   DV+I++T G   + + +       +           + +K
Sbjct: 122 LGGVAEKTREAMLVCEAAGYDVVIVETVGVGQSETAVANMTDMFVVMQLPNAGDDLQAIK 181

Query: 224 RLDPHAPHSVLQV---LDATTGQNALRQVEMFHAVAGT 258
           +        V+     +DA     A  Q++    + G 
Sbjct: 182 KGVMELADLVVINKADIDANAAMRAEAQIKSAMRLFGL 219


>gi|325995572|gb|ADZ50977.1| Cell division protein [Helicobacter pylori 2018]
          Length = 550

 Score = 43.3 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 84/265 (31%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS--RRLDDGV------REELEDLLI 54
            + +  E    + K++K F +    +   +  I     +RLD  +      + ELE+   
Sbjct: 93  PESMPIEKRESLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMSLESTHKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L+VG  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLVGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFI 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|219848260|ref|YP_002462693.1| arginine/ornithine transport system ATPase [Chloroflexus aggregans
           DSM 9485]
 gi|219542519|gb|ACL24257.1| LAO/AO transport system ATPase [Chloroflexus aggregans DSM 9485]
          Length = 372

 Score = 43.3 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 89/267 (33%), Gaps = 62/267 (23%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +    +    E++  +L           +         GV GVGK+T I  L   + D
Sbjct: 72  ESNAPAHITQAQEVLRHLLPYTGGSLRVGIT---------GVPGVGKSTFIEALGTMLCD 122

Query: 138 AGLKVMLAAGD----TFR---SAAIDQLKIWADRTSADFVCSEIGSDAAALA---YEAFK 187
            G +V + A D      R        +++  A   +A    S  G     +A    E   
Sbjct: 123 QGHRVAVLAIDPSSSISRGSILGDKTRMERLARHPNAYIRPSPSGGSLGGVARKTRETLL 182

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A   D+++++T G   + + +                      L ++ A  G + L+
Sbjct: 183 LCEAAGFDIVLVETVGVGQSETAVR---------------GMVDFFLLLMLAGAG-DELQ 226

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG----------------V 291
            ++          L++TK DG  +    I     ++  + +L                  
Sbjct: 227 GIKKGVIELA-DALVVTKADGDNKP-RAIAAQAEYRHALRYLTPATPGWKPPVRTCSAVT 284

Query: 292 GEGI----NDLEPFVAK-----DFSAV 309
           GEGI     ++E F A+      F+A 
Sbjct: 285 GEGIAAIWQEIERFRAEMTANGTFAAR 311


>gi|256028414|ref|ZP_05442248.1| phospholipid-lipopolysaccharide ABC transporter [Fusobacterium sp.
           D11]
 gi|289766339|ref|ZP_06525717.1| phospholipid-lipopolysaccharide ABC transporter [Fusobacterium sp.
           D11]
 gi|289717894|gb|EFD81906.1| phospholipid-lipopolysaccharide ABC transporter [Fusobacterium sp.
           D11]
          Length = 583

 Score = 43.3 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPLSKP 102
           +L+D L  +D    V +   E++ T  + + V     + D+               + K 
Sbjct: 305 DLQDSLPSAD---RVVEIFDEKIETDVFGEAVEFNEKIQDIKFENVNYKYDDSNEYVLKN 361

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-------AGLKVMLAAGDTFR 151
            N D      ++  VG +G GKTT++  L++  +         G+ +     DT+R
Sbjct: 362 INLDVKAG-EIVAFVGKSGSGKTTLVNLLARFFNTDEGKITVNGVNIKNIHLDTYR 416


>gi|119952760|ref|YP_950167.1| partitioning protein parA family [Arthrobacter aurescens TC1]
 gi|119951890|gb|ABM10799.1| putative partitioning protein, parA-family [Arthrobacter aurescens
           TC1]
          Length = 210

 Score = 43.3 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 114 ILVVGV--NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I+VVG    GVGK+TV+  L+ +++  G +V +  GD  RS A   +             
Sbjct: 2   IIVVGSEKGGVGKSTVVTNLAVELAKRGRRVAVVDGDRQRSTARWAVDREEAGHQPRIFV 61

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            E          E       +  DV+++D AG+    
Sbjct: 62  VEKLGSLHETLRE-----LDEGYDVVLVDVAGKDSKE 93


>gi|260805490|ref|XP_002597620.1| hypothetical protein BRAFLDRAFT_82280 [Branchiostoma floridae]
 gi|229282885|gb|EEN53632.1| hypothetical protein BRAFLDRAFT_82280 [Branchiostoma floridae]
          Length = 1135

 Score = 43.3 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 16/169 (9%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSA 153
           +  + +P       RP  I++ G  GVGKTT + KL+   S   ++ +     TF  R  
Sbjct: 298 MEDIFRPRKKLGRRRPLRIVMQGQAGVGKTTSLTKLAVDWSMEKVQALKRINLTFVLRLR 357

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
            I Q     + +  D +  ++         E   +   +K D ++I   G    ++    
Sbjct: 358 LIGQ-----EMSIIDAIFDQLMPKGFPFTKEDLAKCLVEKQDQVLILLDGYDEFDAARCP 412

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA-VAGTTGL 261
            I ++++   R+ P A      V+  TT  + + +++     V   TG 
Sbjct: 413 EIAELLK--GRMYPRA------VVMTTTRPSKVDEIQPTADTVVEITGF 453


>gi|196232233|ref|ZP_03131087.1| cobalamin synthesis protein P47K [Chthoniobacter flavus Ellin428]
 gi|196223601|gb|EDY18117.1| cobalamin synthesis protein P47K [Chthoniobacter flavus Ellin428]
          Length = 367

 Score = 43.3 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 17/165 (10%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           ++ G  G GKTT + KL++++++ GLKV L   D  R     Q+       + +      
Sbjct: 1   MIGGFLGAGKTTAVAKLAQRLTERGLKVGLITNDQGRELVDTQMLRAKGFATEEIPGGCF 60

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR---------- 224
                +L   A +   A + DV I +  G     + L+A +   +R +            
Sbjct: 61  CCRFNSLVEAADRLTTASQPDVFIAEPVGSC---TDLVATVTYPLRRIYGDHFTIAPVSV 117

Query: 225 -LDPHAPHSVL-QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            +DP     VL         +  +   +     A    +++ K+D
Sbjct: 118 LVDPVRAARVLGLESGGNFSEKVIYIYKKQLEEADI--IVINKLD 160


>gi|172038388|ref|YP_001804889.1| hypothetical protein cce_3475 [Cyanothece sp. ATCC 51142]
 gi|171699842|gb|ACB52823.1| hypothetical protein cce_3475 [Cyanothece sp. ATCC 51142]
          Length = 61

 Score = 43.3 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 7/60 (11%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 21 FASTSLKLKEGITDIISSRRLDD----GVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
          F + + +L++    +    ++ +       +E+   L+ +D+ + V +  + ++     A
Sbjct: 2  FDALADRLEDAWKKLRGQDKITEANMQDALKEVRRALLEADVNLQVVKTFIADVEKAAIA 61


>gi|48210048|gb|AAT40547.1| Putative plant disease resistant protein, identical [Solanum
           demissum]
          Length = 1406

 Score = 43.3 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 31/165 (18%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITD--IISSRRLDDGVREELEDLLIRSDIGV- 60
           ++V  E+L    +L          L E I    I    +L+D + E LE+  ++  IG+ 
Sbjct: 193 EEVNYEAL----RLK--VEGQHQNLAETINKQVITIKEKLEDTI-ETLEE--LQKQIGLL 243

Query: 61  AVAQKIVEELLTKR------YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
            + + + +    ++         +  +     ++ ELI ++L   +   N        V+
Sbjct: 244 DLTKYL-DSGKQEKMTVSTSVVDESDIFGRQNEIEELIDRLLSEDANGKNL------TVV 296

Query: 115 LVVGVNGVGKTTVIG------KLSKKMSDAGLKVMLAAGDTFRSA 153
            +VG+ GVGKTT+        K+    +      +    D  R  
Sbjct: 297 PIVGMGGVGKTTLAKAVYNDEKVKNHFNLKAWFCVSEPYDALRIT 341


>gi|260494738|ref|ZP_05814868.1| lipid A export permease/ATP-binding protein MsbA [Fusobacterium sp.
           3_1_33]
 gi|260197900|gb|EEW95417.1| lipid A export permease/ATP-binding protein MsbA [Fusobacterium sp.
           3_1_33]
          Length = 583

 Score = 43.3 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPLSKP 102
           +L+D L  +D    V +   E++ T  + + V     + D+               + K 
Sbjct: 305 DLQDSLPSAD---RVVEIFDEKIETDVFGEVVEFNEKIQDIKFENVNYKYDDSNEYVLKN 361

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-------AGLKVMLAAGDTFR 151
            N D      ++  VG +G GKTT++  L++  +         G+ +     DT+R
Sbjct: 362 INLDVKAG-EIVAFVGKSGSGKTTLVNLLARFFNTDEGKITVNGVNIKNIHLDTYR 416


>gi|227520159|ref|ZP_03950208.1| virulence-associated protein E [Enterococcus faecalis TX0104]
 gi|227072404|gb|EEI10367.1| virulence-associated protein E [Enterococcus faecalis TX0104]
          Length = 810

 Score = 43.3 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 32/119 (26%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I  I++  ++DD + +E+E             ++ +E L              +  V 
Sbjct: 450 EKIYGIVNRGKIDDALVQEIERN------SYDPVKEYLESL----------HWDGVPRVE 493

Query: 90  ELIHKMLMPLSKPFNWDFSHR--------------PHVILVV--GVNGVGKTTVIGKLS 132
            L+   L      FN   + +                  ++V  G  G+GKT +  KL+
Sbjct: 494 TLLIDYLGAEDTSFNRVVTKKFLTAAVGRIFVPGIKFDYMLVTSGPQGIGKTLLPAKLA 552


>gi|307636980|gb|ADN79430.1| cell division protein [Helicobacter pylori 908]
          Length = 550

 Score = 43.3 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 84/265 (31%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS--RRLDDGV------REELEDLLI 54
            + +  E    + K++K F +    +   +  I     +RLD  +      + ELE+   
Sbjct: 93  PESMPIEKRESLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMSLESTHKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L+VG  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLVGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFI 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|296327503|ref|ZP_06870049.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296155329|gb|EFG96100.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 583

 Score = 43.3 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPLSKP 102
           +L+D L  +D    V +   E++ T  + + V     + D+               + K 
Sbjct: 305 DLQDSLPSAD---RVVEIFDEKIETDVFGEAVEFNEKIQDIKFENVNYKYDDSNEYVLKN 361

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-------AGLKVMLAAGDTFR 151
            N D      ++  VG +G GKTT++  L++  +         G+ +     DT+R
Sbjct: 362 INLDVKAG-EIVAFVGKSGSGKTTLVNLLARFFNTDEGSITVNGVNIKNIHLDTYR 416


>gi|308475546|ref|XP_003099991.1| hypothetical protein CRE_20862 [Caenorhabditis remanei]
 gi|308266043|gb|EFP09996.1| hypothetical protein CRE_20862 [Caenorhabditis remanei]
          Length = 646

 Score = 43.3 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           KML  L K       H    +LV+G NG GKTT I KL++++S  
Sbjct: 489 KMLSELDKVCRDGRQH----VLVLGGNGSGKTTFIKKLARRLSYN 529


>gi|289613812|emb|CBI59347.1| unnamed protein product [Sordaria macrospora]
          Length = 344

 Score = 43.3 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           + + RP VI + GV GVGKTT++  L++ +    GL  ++ + D F     DQLK+  + 
Sbjct: 53  EANPRPFVIGLNGVQGVGKTTLVKALAETLQEREGLNTLVVSIDDFYLTHEDQLKLAEEH 112

Query: 165 TS 166
           + 
Sbjct: 113 SD 114


>gi|125624073|ref|YP_001032556.1| arsenical pump-driving ATPase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492881|emb|CAL97840.1| arsenical pump-driving ATPase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070841|gb|ADJ60241.1| arsenical pump-driving ATPase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 571

 Score = 43.3 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           +VQ  L ++   + +    LS   +        +I  +G  GVGKTTV  K+++ +   G
Sbjct: 295 TVQPELPEIDSEMREY-PELSTVIDNFVKTGKKIIFTMGKGGVGKTTVAIKVAQALQKQG 353

Query: 140 LKVMLAAGD 148
            KV LA  D
Sbjct: 354 KKVHLATTD 362


>gi|325846508|ref|ZP_08169423.1| phosphoribulokinase/uridine kinase family protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481266|gb|EGC84307.1| phosphoribulokinase/uridine kinase family protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 542

 Score = 43.3 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            L K      S+  +++++ G +  GKTT   KL+ +++  G    + + D +
Sbjct: 265 QLGKCAKEIISNDMNIVMLAGPSSSGKTTTAKKLAIQLAVLGKDAFVISTDDY 317


>gi|224477038|ref|YP_002634644.1| putative ABC transporter ATP-binding protein [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222421645|emb|CAL28459.1| putative ABC transporter ATP-binding protein [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 642

 Score = 43.3 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 86/274 (31%), Gaps = 50/274 (18%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           T G A +  K+ E I       R+D  + +      I+ D               +    
Sbjct: 289 TSGMAKSRRKVLEKI------ERIDKPMLDA-RSANIQFDF-------------DRNTGN 328

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-KKMS 136
           DV   R L      I     P++ P   + S   H I V+G NG+GK+T I  ++ +   
Sbjct: 329 DVYHIRNL-----EIGYHDQPVTSPITLEVSKGDH-IAVIGPNGIGKSTFIKTIAERIPK 382

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIW--ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             G     A     R    DQ +    +++T  D+V  +  +           +    + 
Sbjct: 383 INGEITHGANL---RVGYYDQKQAEFKSNKTILDYVWDQYPTMPEKDVRAVLGRFLFVQD 439

Query: 195 DV--LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           DV  +I D +G       L   + +   VL   +P     +         +  L Q    
Sbjct: 440 DVKKIINDLSGGEKARLQLALLMLERNNVLILDEPTNHLDI-------DSKEMLEQALQH 492

Query: 253 HA----VAGTTGLIMTKM-----DGTARGGGLIP 277
                         + ++     D    GG +  
Sbjct: 493 FEGTLIFVSHDRYFINQLANKIFDMDETGGTIYA 526


>gi|260174517|ref|ZP_05760929.1| putative ParA-related protein [Bacteroides sp. D2]
 gi|315922784|ref|ZP_07919024.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696659|gb|EFS33494.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 290

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTF------RSAAIDQLKIWADRTSADFVCSEI 174
           GVGKTT+    +  +   G++V++   D        R+A I++              +  
Sbjct: 16  GVGKTTLCVTFANYLVTKGVRVVVIDCDFQHSIMKCRTADINKYGEQQMPYEVWAYEAND 75

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
                +L     K     ++DV+++D+ G
Sbjct: 76  KEMMTSLME---KLHNDPEIDVVLMDSPG 101


>gi|212696242|ref|ZP_03304370.1| hypothetical protein ANHYDRO_00778 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676871|gb|EEB36478.1| hypothetical protein ANHYDRO_00778 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 542

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            L K      S+  +++++ G +  GKTT   KL+ +++  G    + + D +
Sbjct: 265 QLGKCAKEIISNDMNIVMLAGPSSSGKTTTAKKLAIQLAVLGKDAFVISTDDY 317


>gi|297379508|gb|ADI34395.1| cell division protein (ftsH) [Helicobacter pylori v225d]
          Length = 550

 Score = 42.9 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIEKRENLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMNLESAHKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLKND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|320008513|gb|ADW03363.1| LAO/AO transport system ATPase [Streptomyces flavogriseus ATCC
           33331]
          Length = 320

 Score = 42.9 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 72/223 (32%), Gaps = 35/223 (15%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           + V     +VE+    R      +  ++   S  + +++  L+       +   +V+ + 
Sbjct: 3   VDVPT---LVEQAREGRPRAVARLISLVEGASPQLREVMAALA-----PLAGHAYVVGLT 54

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFV 170
           G  GVGK+T    L      AG +V + A D        A+      +   A        
Sbjct: 55  GSPGVGKSTSTSALVSAYRKAGKRVAVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIR 114

Query: 171 CSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                     LA+   +A +   A   DV++++T G   +                 +  
Sbjct: 115 SMATRGHLGGLAWSAPQAIRVLDAAGCDVILVETVGVGQSEVE--------------IAS 160

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
            A  SV+ +       + ++  +      G    ++ K D   
Sbjct: 161 QADTSVVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 200


>gi|325997167|gb|ADZ49375.1| ATP dependent zinc metallopeptidase [Helicobacter pylori 2017]
          Length = 550

 Score = 42.9 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 84/265 (31%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS--RRLDDGV------REELEDLLI 54
            + +  E    + K++K F +    +   +  I     +RLD  +      + ELE+   
Sbjct: 93  PESMPIEKRESLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMSLESTHKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L+VG  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLVGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFI 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|242399377|ref|YP_002994801.1| Lysine/arginine/ornithine transport system kinase [Thermococcus
           sibiricus MM 739]
 gi|242265770|gb|ACS90452.1| Lysine/arginine/ornithine transport system kinase [Thermococcus
           sibiricus MM 739]
          Length = 322

 Score = 42.9 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 11/152 (7%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L+ + +  D      L  + E   +    + K   +  + R ++I + G  G GK+T
Sbjct: 5   IDDLIERMFKGDKRATARLITLVENDEEKAREIVKKI-YSKTGRAYIIGITGPPGSGKST 63

Query: 127 VIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSEIGSDAA 179
           ++ KL KK  D G  V + A D    F   A+      ++  +                 
Sbjct: 64  LVDKLIKKARDEGNIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLG 123

Query: 180 ALA---YEAFKQAQAKKVDVLIIDTAGRLHNN 208
            LA    +A K   A   D++ ++T G     
Sbjct: 124 GLAKATNDAIKILDAYGCDIIFVETVGVGQIE 155


>gi|328791388|ref|XP_393078.4| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           [Apis mellifera]
          Length = 452

 Score = 42.9 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 3/113 (2%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           +    +F ++PHVI +VG+   GKT +  KL + ++  G+   +     +R  A    + 
Sbjct: 26  RGERANFVNKPHVIAMVGLPARGKTYISKKLCRYLNWIGISTKVFNLGEYRRHATTAYQC 85

Query: 161 WA--DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
                  +   +       A     +  +  ++   +V + D          L
Sbjct: 86  HEFFRPDNIKAMAIRT-QCAMDALKDVCQWLESGDGEVAVFDATNSTIERRQL 137


>gi|19703933|ref|NP_603495.1| phospholipid-lipopolysaccharide ABC transporter [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19714105|gb|AAL94794.1| Phospholipid-lipopolysaccharide ABC transporter [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 583

 Score = 42.9 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPLSKP 102
           +L+D L  +D    V +   E++ T  + + V     + D+               + K 
Sbjct: 305 DLQDSLPSAD---RVVEIFDEKIETDVFGEAVEFNEKIQDIKFENVNYKYDDSNEYVLKN 361

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-------AGLKVMLAAGDTFR 151
            N D      ++  VG +G GKTT++  L++  +         G+ +     DT+R
Sbjct: 362 INLDVKAG-EIVAFVGKSGSGKTTLVNLLARFFNTDDGKITVNGVNIKNIHLDTYR 416


>gi|294631183|ref|ZP_06709743.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292834516|gb|EFF92865.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 1131

 Score = 42.9 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RS 152
           M+  L K    D S R  ++L+ G  G GKTT + + + +    G KV     D    R 
Sbjct: 632 MVDALDKAAQRDQSGRAPIVLLKGSAGSGKTTALMQCAYRFHVRGEKVYWVDRDASVPRR 691

Query: 153 AAIDQ-LKIWADRTSADFV 170
              DQ L+        D V
Sbjct: 692 TIEDQVLEQHVGAVFVDDV 710


>gi|315187159|gb|EFU20916.1| TGS domain-containing protein [Spirochaeta thermophila DSM 6578]
          Length = 548

 Score = 42.9 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +   +R    ++E +H+  +          + R  ++LV G +  GKTT   KLS  +  
Sbjct: 250 EARKEREFIQIAEALHEQRISQIASRIAAEAPRIKLVLVAGPSSSGKTTFAKKLSMYLKV 309

Query: 138 AGLKVMLAAGDT-FRS 152
            GL+ +  + D  FR 
Sbjct: 310 FGLRPLAISLDNYFRP 325


>gi|296123085|ref|YP_003630863.1| cobalamin synthesis protein P47K [Planctomyces limnophilus DSM
           3776]
 gi|296015425|gb|ADG68664.1| cobalamin synthesis protein P47K [Planctomyces limnophilus DSM
           3776]
          Length = 384

 Score = 42.9 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I+V G  G GKTT + +L+++   AG  V +   D
Sbjct: 25  IMVGGFLGAGKTTTLARLARQYMAAGHTVGIVTND 59


>gi|156552105|ref|XP_001605153.1| PREDICTED: similar to
           6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase
           short form [Nasonia vitripennis]
          Length = 454

 Score = 42.9 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           +    +F ++PHVI +VG+   GKT +  KL + ++  G+   +     +R  A    + 
Sbjct: 29  RGERANFVNKPHVIAMVGLPARGKTYISKKLCRYLNWIGINTKVYNLGEYRRHATTAYQC 88

Query: 161 W 161
            
Sbjct: 89  H 89


>gi|321468928|gb|EFX79911.1| hypothetical protein DAPPUDRAFT_304281 [Daphnia pulex]
          Length = 459

 Score = 42.9 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 13/104 (12%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           ++ + PHVI +VG+   GKT +  KLS+ ++  G+   +     +R  A +  K      
Sbjct: 31  NYVNTPHVIALVGLPARGKTYMGKKLSRYLNWIGINTKVFNLGEYRRQATEAYKSH---- 86

Query: 166 SADFVCS---EIGSDAAALAYEAFKQAQA----KKVDVLIIDTA 202
             DF      E  +    +A +A + A         +V + D  
Sbjct: 87  --DFFRPDNTEAMALRERVAMDALEDACEWIEISGGEVAVFDAT 128


>gi|224541243|ref|ZP_03681782.1| hypothetical protein CATMIT_00403 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525888|gb|EEF94993.1| hypothetical protein CATMIT_00403 [Catenibacterium mitsuokai DSM
           15897]
          Length = 311

 Score = 42.9 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTS--- 166
             V L+ G  G GKTT I K +K + D GL + +   D     AI+  + +  +      
Sbjct: 2   VQVDLITGFLGSGKTTFIKKYAKYLIDQGLHIAILENDF---GAINVDMMVLEEELGDQC 58

Query: 167 --ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
                V                     +  D ++++ +G    + 
Sbjct: 59  ELEMVVGGGDLDCHRRRFKTKLISMGMRGFDRILVEPSGIYDVDE 103


>gi|225028638|ref|ZP_03717830.1| hypothetical protein EUBHAL_02917 [Eubacterium hallii DSM 3353]
 gi|224954024|gb|EEG35233.1| hypothetical protein EUBHAL_02917 [Eubacterium hallii DSM 3353]
          Length = 317

 Score = 42.9 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 14/142 (9%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID------QLKIWADRTSAD 168
           L+ G  G GKTT I K +K + D GL + +   D     A++      Q       T   
Sbjct: 6   LITGFLGSGKTTFIKKYAKYLIDQGLNIGILENDF---GAVNVDMMLLQDIAGEKCTLEM 62

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                                     D ++I+ +G    +    A     +     +   
Sbjct: 63  VAGGCDKDCHRRRFRTKLIAMGMCGYDRVLIEPSGIFDMDEFFDALHESPLDRWYEIG-- 120

Query: 229 APHSVLQVLDATTGQNALRQVE 250
              +V+ V+DA   +N     E
Sbjct: 121 ---NVITVVDAMLEENLSEDAE 139


>gi|317181629|dbj|BAJ59413.1| cell division protein [Helicobacter pylori F57]
          Length = 550

 Score = 42.9 bits (100), Expect = 0.064,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIEKRENLSKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMNLESAHKNELENSFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQNLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|297300447|ref|XP_002805591.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
           [Macaca mulatta]
          Length = 500

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           MP  K      ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ 
Sbjct: 1   MPFRKACGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVK 60

Query: 157 QL 158
           Q 
Sbjct: 61  QY 62


>gi|295293220|ref|NP_001171229.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 isoform 8
           [Mus musculus]
          Length = 500

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           MP  K      ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ 
Sbjct: 1   MPFRKACGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVK 60

Query: 157 QL 158
           Q 
Sbjct: 61  QY 62


>gi|221044418|dbj|BAH13886.1| unnamed protein product [Homo sapiens]
          Length = 500

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           MP  K      ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ 
Sbjct: 1   MPFRKACGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVK 60

Query: 157 QL 158
           Q 
Sbjct: 61  QY 62


>gi|221044114|dbj|BAH13734.1| unnamed protein product [Homo sapiens]
          Length = 344

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           MP  K      ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ 
Sbjct: 42  MPFRKACGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVK 101

Query: 157 QL 158
           Q 
Sbjct: 102 QY 103


>gi|119606806|gb|EAW86400.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, isoform
           CRA_c [Homo sapiens]
          Length = 506

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           MP  K      ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ 
Sbjct: 1   MPFRKACGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVK 60

Query: 157 QL 158
           Q 
Sbjct: 61  QY 62


>gi|119606807|gb|EAW86401.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, isoform
           CRA_d [Homo sapiens]
          Length = 182

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           MP  K      ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ 
Sbjct: 1   MPFRKACGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVK 60

Query: 157 QL 158
           Q 
Sbjct: 61  QY 62


>gi|119606803|gb|EAW86397.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, isoform
           CRA_a [Homo sapiens]
          Length = 503

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           MP  K      ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ 
Sbjct: 1   MPFRKACGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVK 60

Query: 157 QL 158
           Q 
Sbjct: 61  QY 62


>gi|224282149|ref|NP_001138915.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 isoform 2
           [Homo sapiens]
 gi|55662072|emb|CAH73604.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Homo
           sapiens]
 gi|55664634|emb|CAH72161.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Homo
           sapiens]
          Length = 500

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           MP  K      ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ 
Sbjct: 1   MPFRKACGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVK 60

Query: 157 QL 158
           Q 
Sbjct: 61  QY 62


>gi|74218344|dbj|BAE23784.1| unnamed protein product [Mus musculus]
          Length = 107

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           MP  K      ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ 
Sbjct: 1   MPFRKACGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVK 60

Query: 157 QL 158
           Q 
Sbjct: 61  QY 62


>gi|207080108|ref|NP_001128959.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 isoform 2
           [Pongo abelii]
 gi|55733671|emb|CAH93512.1| hypothetical protein [Pongo abelii]
          Length = 506

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           MP  K      ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ 
Sbjct: 1   MPFRKACGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVK 60

Query: 157 QL 158
           Q 
Sbjct: 61  QY 62


>gi|332878829|ref|ZP_08446544.1| ATP-binding protein, Mrp/Nbp35 family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332683180|gb|EGJ56062.1| ATP-binding protein, Mrp/Nbp35 family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 372

 Score = 42.9 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 91/278 (32%), Gaps = 49/278 (17%)

Query: 58  IGVAVAQKIV---EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK------------P 102
           +     Q IV   +E++      + S+Q       E++  +   + +            P
Sbjct: 25  VDSGAVQNIVVFGDEVVVDVVINNPSMQAKKRTEVEIMKAIHGEVHEKAKVVVNVKVVVP 84

Query: 103 FNWDFSHRP-----HVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
              +   +P     +VI V  G  GVGK+TV   L+  ++  G KV +   D +      
Sbjct: 85  ETPEIKGKPIPGIQNVIAVASGKGGVGKSTVTANLAASLAKMGFKVGILDADVYGP---- 140

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN-NSILMAGI 215
                    S   +    G    ++  E     Q  +   + I + G   N N  ++   
Sbjct: 141 ---------SIPIMFDVAGERPQSVVIEGKSFIQPIENYGVKILSIGFFTNANQAVIWRG 191

Query: 216 GKMIRVLKRL--DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD-----G 268
               + L ++  + H       ++D   G   +            TG ++          
Sbjct: 192 AMASKALNQMIFESHWGELDFLLIDLPPGTGDIH--LSIMQALPVTGAVIVSTPQKIALA 249

Query: 269 TARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDF 306
            AR G  +       +PV  LG+   + ++  F  ++ 
Sbjct: 250 DARRGVAMFQQENINVPV--LGI---VENMAYFTPEEL 282


>gi|6016719|gb|AAF01545.1|AC009325_15 putative cell division control protein [Arabidopsis thaliana]
          Length = 703

 Score = 42.9 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 80/242 (33%), Gaps = 48/242 (19%)

Query: 85  LYDVSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
              + EL   +L P+   +PF       P  IL  G  G GKT    KL+  +++     
Sbjct: 122 KKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKT----KLANAIANE---- 173

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
                     A +   KI A       V      +   L  +A++ A +    +  ID  
Sbjct: 174 ----------AGVPFYKISATEV-ISGVSGASEENIRELFSKAYRTAPSIVF-IDEIDAI 221

Query: 203 GRLHNNSILMAGIGKMIRVLKRLD----------PHAPHSVLQVLDATTGQNALRQVEMF 252
           G    N         + ++L  +D          P +    + V+ AT   +AL      
Sbjct: 222 GSKRENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRR 281

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE-PFVAKDFSAVIT 311
                 T + +T  D  AR   ++ +V             + +  LE PF  K  + +  
Sbjct: 282 SGRFE-TEIALTAPDEDARA-EILSVVA------------QKLR-LEGPFDKKRIARLTP 326

Query: 312 GC 313
           G 
Sbjct: 327 GF 328


>gi|300121865|emb|CBK22439.2| unnamed protein product [Blastocystis hominis]
          Length = 296

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                     +P   +V+G+ G GKTT++ K+S  M+  G    +   D
Sbjct: 1   MSEIKDPTPDQPACCIVIGMAGSGKTTLMKKISNYMTYNGKNAYVVNLD 49


>gi|302542453|ref|ZP_07294795.1| LAO/AO transport system ATPase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460071|gb|EFL23164.1| LAO/AO transport system ATPase [Streptomyces himastatinicus ATCC
           53653]
          Length = 321

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 24/173 (13%)

Query: 55  RSDIGVAVAQKIVEELLT---KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
            +D  V     +VE+      +  A+ +S+          +   L PL++          
Sbjct: 1   MADADVPT---LVEQARQGRPRAVARLISLIEGDSPRLREVMAALAPLAQGA-------- 49

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADR 164
           +V+ V G  GVGK+T    L      AG +V + A D        A+      +   A  
Sbjct: 50  YVVGVTGSPGVGKSTSTSALVSAYRRAGKRVGVLAVDPSSPFSGGALLGDRIRMSEHASD 109

Query: 165 TSADFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
                           LA+   +A +       DV+I++T G   +   + A 
Sbjct: 110 PGVYIRSMATRGHLGGLAWAAPQAIRVLDVAGCDVVIVETVGVGQSEVEIAAQ 162


>gi|146339682|ref|YP_001204730.1| arginine/ornithine transport system ATPase [Bradyrhizobium sp.
           ORS278]
 gi|146192488|emb|CAL76493.1| Putative LAO/AO transport system kinase, argK family
           [Bradyrhizobium sp. ORS278]
          Length = 329

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 19/145 (13%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             EL+  +L           +  P         GVGK+T I  L   + + G KV + A 
Sbjct: 43  ARELVQALLPRTGNAIRVGITGSP---------GVGKSTTIDALGMYLIEQGQKVAVLAV 93

Query: 148 D--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           D  + R+          + +L             S      AA   EA    +A   DV+
Sbjct: 94  DPSSARTGGSILGDKTRMARLSHHEHAFIRPSPSSGTLGGVAAKTREAMLLCEAAGFDVV 153

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVL 222
           +++T G   + + +       + ++
Sbjct: 154 LVETVGIGQSETAVCDMTDFFLALM 178


>gi|66827813|ref|XP_647261.1| hypothetical protein DDB_G0268334 [Dictyostelium discoideum AX4]
 gi|60475685|gb|EAL73620.1| hypothetical protein DDB_G0268334 [Dictyostelium discoideum AX4]
          Length = 792

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 13/103 (12%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
            GI +I +   LDD     LE +++          +I  E+L KR          L +V 
Sbjct: 480 SGIDNI-NGVPLDDDKLRNLEPVMLE---------RICNEILDKRQEVKWGDIAGLSEVK 529

Query: 90  ELIHKMLM-PLSKP-FNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             I +M++ P+ +P         P  +L+ G  G GK T+IGK
Sbjct: 530 SQIMEMVVFPIIRPELFKGLRIPPKGLLLFGPPGTGK-TMIGK 571


>gi|329946925|ref|ZP_08294337.1| ABC transporter, ATP-binding protein [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526736|gb|EGF53749.1| ABC transporter, ATP-binding protein [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 283

 Score = 42.9 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 32/220 (14%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P+ +  +        V+ ++G NGVGKTT++  L   ++    +V +   D  R+ A  
Sbjct: 17  TPVLRGIDLSVEAG-EVVCLLGPNGVGKTTLVENLLGSLTPTSGRVRMLGTDPRRAGADF 75

Query: 157 QLKI-WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN-NSILMAG 214
            +++    ++  D     +      +       A        ++D  G     +S L   
Sbjct: 76  WVRVGLVQQSWTDHAKWRVRDQLEWIRSVQLTAASRVSGVEEVLDAVGLSEKADSRLSRL 135

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLD-ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            G   R +           L VLD  TTG + + +            LI+ ++D  A   
Sbjct: 136 SGGQRRTIDFAAALMASPELLVLDEPTTGLDPVSKAR-------LHDLILARVDDDA--- 185

Query: 274 GLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGC 313
               IV+T               DL    A+  ++ +   
Sbjct: 186 ---TIVMTTH-------------DLAE--AERLASRVLIM 207


>gi|224476350|ref|YP_002633956.1| hypothetical protein Sca_0861 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420957|emb|CAL27771.1| truncated signal recognition particle homolog (fragment 2)
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 180

 Score = 42.9 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 293 EGINDLEPFVAKDFSAVITGCLD 315
           E ++ LE F  +  ++ I G  D
Sbjct: 3   EKMDGLELFHPERMASRILGMGD 25


>gi|170033703|ref|XP_001844716.1| cell division protease ftsH [Culex quinquefasciatus]
 gi|167874684|gb|EDS38067.1| cell division protease ftsH [Culex quinquefasciatus]
          Length = 757

 Score = 42.9 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++
Sbjct: 315 EDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVA 369

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                   A    F +A  +  ++            +       L   A ++A      +
Sbjct: 370 GE------AGVPFFHAAGPEFDEVL---------VGQGARRVRDLFKAAKERAPCVIF-I 413

Query: 197 LIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
             ID+ G    NS+L       + ++L  +D    +  + VL AT  ++ L Q  +    
Sbjct: 414 DEIDSVGAKRTNSVLHPYANQTINQLLSEMDGFQQNEGVIVLGATNRRDDLDQALLRPGR 473

Query: 256 AGTTGLIMT 264
                ++ T
Sbjct: 474 FDVEVVVPT 482


>gi|317180091|dbj|BAJ57877.1| cell division protein [Helicobacter pylori F32]
          Length = 550

 Score = 42.9 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIEKRENLSKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMNLESAHKNELENSFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|108562713|ref|YP_627029.1| cell division protein [Helicobacter pylori HPAG1]
 gi|107836486|gb|ABF84355.1| cell division protein [Helicobacter pylori HPAG1]
          Length = 550

 Score = 42.9 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIEKRENLSKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMNLESTSKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|242310484|ref|ZP_04809639.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239522882|gb|EEQ62748.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 371

 Score = 42.5 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 26/236 (11%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
              VA+K+  ++  K   + ++ +  L        +         N     +  V++  G
Sbjct: 48  SPEVAEKLRTQITQKLNTQGIT-KINLDIKQPKPQEQTQKPQSTKNLAPQIKNFVMVSSG 106

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGK+T    L+  ++  G KV L   D +                      E+    
Sbjct: 107 KGGVGKSTTSVNLAIALAQQGKKVGLLDADIYGPN-------IPRMLGLQKDKPEVDQKL 159

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQV- 236
             L        QA  ++++   + G L++    L+     +IR ++++        L V 
Sbjct: 160 KKLIP-----LQAYGIEMI---SMGVLYDEGQSLIWRGPMIIRAIEQMLSDVLWDNLDVM 211

Query: 237 ---LDATTGQNALRQVEMFHAVAGTTGLIMTK--MDGTARGGGLIPIVVTHKIPVY 287
              +   TG   L   +     AG       K  +D  AR    + +    KIPV 
Sbjct: 212 VIDMPPGTGDAQLTLAQSVPVTAGIAVSTPQKVALDDGAR---ALDMFSKLKIPVA 264


>gi|78044715|ref|YP_360893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996830|gb|ABB15729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 492

 Score = 42.5 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 91/285 (31%), Gaps = 34/285 (11%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSD----------IGVA--VAQ--KIVEELLTK 73
           L E +  II+   ++     ELE   I  D          + +    A     +E+++ K
Sbjct: 6   LVEILKTIITKNGIN---WAELEVTGIEQDSRQVKPGNIFVAIKGFTADGHDFIEKVIEK 62

Query: 74  RYAKDVSVQRV--LYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGV-GKTTVIG 129
           + A  V+ +    ++ V+ L+ K            F   P   I V+GV G  GKTTV  
Sbjct: 63  KPALIVAEEERPGIFGVNHLLVKDSRQALALLARTFYGNPTEKISVIGVTGTNGKTTVTH 122

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSA--AIDQLKIWADRTSA-----DFVCSEIGSDAAALA 182
            ++  +   G K  L      R     +       D  S      + V SE+   A  ++
Sbjct: 123 LVTSLLESFGYKTGLIGTIYNRIGDKILPVTNTTPDALSLQRLFAEMVKSEVSHVAMEVS 182

Query: 183 YEAFKQAQAKKVD----VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             A  Q +   +D    V    T   L  +  +         + K L        +   D
Sbjct: 183 SHALVQKRVLGIDFKTGVFTNLTQDHLDFHESMENYFNAKKELFKILAEQKALPGVINKD 242

Query: 239 ATTGQNALRQVEMFHAVAGT--TGLIMTKMDGTARGGGLIPIVVT 281
              GQ  L++V       G      I  K       G    +   
Sbjct: 243 DFYGQRILKEVAHPFVTYGIKEQADITAKNVELTNSGTAFTLCYQ 287


>gi|282861154|ref|ZP_06270219.1| LAO/AO transport system ATPase [Streptomyces sp. ACTE]
 gi|282563812|gb|EFB69349.1| LAO/AO transport system ATPase [Streptomyces sp. ACTE]
          Length = 323

 Score = 42.5 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 72/223 (32%), Gaps = 35/223 (15%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           + V     +VE+    R      +  ++   S  + +++  L+       +   +V+ + 
Sbjct: 3   VDVPT---LVEQARQGRPRAVARLISLVEGASPQLREVMAALA-----PLAGHAYVVGLT 54

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFV 170
           G  GVGK+T    L      AG +V + A D        A+      +   A        
Sbjct: 55  GSPGVGKSTSTSALVSAYRKAGKRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIR 114

Query: 171 CSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                     LA+   +A +   A   DV++++T G   +                 +  
Sbjct: 115 SMATRGHLGGLAWSAPQAIRVLDAAGCDVVLVETVGVGQSEVE--------------IAS 160

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
            A  SV+ +       + ++  +      G    ++ K D   
Sbjct: 161 QADTSVVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 200


>gi|170066801|ref|XP_001868229.1| fidgetin [Culex quinquefasciatus]
 gi|167862972|gb|EDS26355.1| fidgetin [Culex quinquefasciatus]
          Length = 607

 Score = 42.5 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 73/213 (34%), Gaps = 35/213 (16%)

Query: 47  EELEDLLIRSD-----IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK-MLMPLS 100
           EELE++    D     I   + + I  E++ +           L    ++I + ++ PL 
Sbjct: 298 EELEEV----DERLRNIDPKMVELIRNEIMDRFSPVTWDDIAGLEYAKQIIREAIVCPLL 353

Query: 101 KP-FNWDFSHRPHVILVVGVNGVGKTTVIGK-LSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +P         P  IL+ G  G GKT  IGK ++ + +            TF        
Sbjct: 354 RPDIFTGLRKPPRGILLFGPPGTGKTL-IGKCIASQSNA-----------TF-------F 394

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
            I A   ++ ++           A  A  Q     +D   ID+     + +   +     
Sbjct: 395 SISASSLTSKWIGEGEKMVRTLFAVAAVHQPAVVFIDE--IDSLLCQRSETEHESSRRLK 452

Query: 219 IRVLKRLD--PHAPHSVLQVLDATTGQNALRQV 249
              L +LD    A    + ++ AT     L + 
Sbjct: 453 TEFLIQLDGAATADDERILIVGATNRPQELDEA 485


>gi|314923935|gb|EFS87766.1| hypothetical protein HMPREF9603_00631 [Propionibacterium acnes
           HL001PA1]
 gi|315090703|gb|EFT62679.1| hypothetical protein HMPREF9578_02053 [Propionibacterium acnes
           HL110PA4]
          Length = 35

 Score = 42.5 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 285 PVYFLGVGEGINDLEPFVAKDFSAVITG 312
           PV  +G+GEG +DL PF A +F   + G
Sbjct: 2   PVKLIGLGEGADDLAPFDADNFVTGLMG 29


>gi|84515948|ref|ZP_01003309.1| urease accessory protein UreG [Loktanella vestfoldensis SKA53]
 gi|84510390|gb|EAQ06846.1| urease accessory protein UreG [Loktanella vestfoldensis SKA53]
          Length = 196

 Score = 42.5 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 74/197 (37%), Gaps = 35/197 (17%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKIWADRTSAD 168
           G  G GKTT+   L++ + D  L + +   D +         R   +   ++    T   
Sbjct: 7   GPVGAGKTTLTAALARALKDE-LSLCVITNDIYTQEDAEALMRMQILPADRVMGVETGGC 65

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
              +     +  LA  A  +A+   +D+++I++ G       L A             P 
Sbjct: 66  PHTAIREDASINLAAVAEMRARHPDLDLILIESGG-----DNLSATYS----------PE 110

Query: 229 APHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV------TH 282
                + V+D   G++  R  +   A+  +  L++ K D     G  + ++         
Sbjct: 111 LADLTIYVIDTAAGEDIPR--KGGPAITRSDILVVNKTDLAPYVGASLDVMATDAARMRG 168

Query: 283 KIPVYFLGV--GEGIND 297
            +PV F  +  G+G++D
Sbjct: 169 TLPVVFASLKHGKGVDD 185


>gi|325280067|ref|YP_004252609.1| AAA ATPase [Odoribacter splanchnicus DSM 20712]
 gi|324311876|gb|ADY32429.1| AAA ATPase [Odoribacter splanchnicus DSM 20712]
          Length = 554

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 34/73 (46%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           ++     +  +SE +H+  + L          +  VILV G +  GKTT   +L+ ++  
Sbjct: 256 ELKYSGPMIKISEALHEKKISLIADKIKARHKKVKVILVSGPSSSGKTTFSKRLAIQLMV 315

Query: 138 AGLKVMLAAGDTF 150
            G+K +  + D +
Sbjct: 316 NGMKPVNLSLDNY 328


>gi|260822599|ref|XP_002606689.1| hypothetical protein BRAFLDRAFT_277775 [Branchiostoma floridae]
 gi|229292033|gb|EEN62699.1| hypothetical protein BRAFLDRAFT_277775 [Branchiostoma floridae]
          Length = 467

 Score = 42.5 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            L  L        ++ P VI++VG+   GKT +  KL++ ++  G+K  +     +R +A
Sbjct: 21  ELGNLGPASCPQLANCPTVIVMVGLPARGKTYMSKKLTRYLNWIGVKCRVFNVGEYRRSA 80

Query: 155 IDQLK 159
           + + K
Sbjct: 81  VKEYK 85


>gi|258513866|ref|YP_003190088.1| ABC transporter-like protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257777571|gb|ACV61465.1| ABC transporter related [Desulfotomaculum acetoxidans DSM 771]
          Length = 602

 Score = 42.5 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 11/129 (8%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
             + +VG  G GKTT++  L++       ++++   D  + AA DQL+          V 
Sbjct: 387 TTVALVGHTGAGKTTILSLLARLYEVQEGQILIDGVDIRQIAA-DQLR------KVLAVV 439

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTA---GRLHNNSILMAGIGKMI-RVLKRLDP 227
            +     +    E  +       D ++I+ A   G       L AG    + R  +RL  
Sbjct: 440 QQDPFLFSTTVMENIRYGNPSATDEMVIEAAKALGVHDIIEQLPAGYQTDVGRRGERLSG 499

Query: 228 HAPHSVLQV 236
                +  V
Sbjct: 500 GQVQIIALV 508


>gi|315586280|gb|ADU40661.1| cell division protein (FtsH) [Helicobacter pylori 35A]
          Length = 550

 Score = 42.5 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 84/265 (31%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS--RRLDDGV------REELEDLLI 54
            + +  E    + K++K F +    +   +  I     +RLD  +      + ELE+   
Sbjct: 93  PESMPIEKRENLNKVSKIFLALLFFISSMLFGIFWRLPKRLDAKMSLESVHKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|170028516|ref|XP_001842141.1| fidgetin [Culex quinquefasciatus]
 gi|167876263|gb|EDS39646.1| fidgetin [Culex quinquefasciatus]
          Length = 607

 Score = 42.5 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 73/213 (34%), Gaps = 35/213 (16%)

Query: 47  EELEDLLIRSD-----IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK-MLMPLS 100
           EELE++    D     I   + + I  E++ +           L    ++I + ++ PL 
Sbjct: 298 EELEEV----DERLRNIDPKMVELIRNEIMDRFSPVTWDDIAGLEYAKQIIREAIVCPLL 353

Query: 101 KP-FNWDFSHRPHVILVVGVNGVGKTTVIGK-LSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +P         P  IL+ G  G GKT  IGK ++ + +            TF        
Sbjct: 354 RPDIFTGLRKPPRGILLFGPPGTGKTL-IGKCIASQSNA-----------TF-------F 394

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
            I A   ++ ++           A  A  Q     +D   ID+     + +   +     
Sbjct: 395 SISASSLTSKWIGEGEKMVRTLFAVAAVHQPAVVFIDE--IDSLLCQRSETEHESSRRLK 452

Query: 219 IRVLKRLD--PHAPHSVLQVLDATTGQNALRQV 249
              L +LD    A    + ++ AT     L + 
Sbjct: 453 TEFLIQLDGAATADDERILIVGATNRPQELDEA 485


>gi|25153574|ref|NP_510386.2| PeRoXisome assembly factor family member (prx-1) [Caenorhabditis
           elegans]
 gi|14646835|dbj|BAB62002.1| peroxin [Caenorhabditis elegans]
 gi|19571640|emb|CAA94120.2| C. elegans protein C11H1.4a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 996

 Score = 42.5 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 19/25 (76%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDA 138
           ++V+G NG GKTT I KL++++S  
Sbjct: 504 VMVLGGNGSGKTTFIKKLARRLSHN 528


>gi|261839142|gb|ACX98907.1| cell division protein [Helicobacter pylori 52]
          Length = 550

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIEKRENLNKVSKIFLALLFFISSMLFGIFWRLPKRLDAKMNLESAHKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|302558340|ref|ZP_07310682.1| LAO/AO transport system ATPase [Streptomyces griseoflavus Tu4000]
 gi|302475958|gb|EFL39051.1| LAO/AO transport system ATPase [Streptomyces griseoflavus Tu4000]
          Length = 324

 Score = 42.5 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 32/218 (14%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              +V +    R      +  ++   S  + +++  L+       +   +V+ + G  GV
Sbjct: 4   VSSLVAQAREGRPRAVARLISLVEGASPQLREVMAALA-----PLTGNAYVVGLTGSPGV 58

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIG 175
           GK+T    L       G +V + A D        A+      +   A             
Sbjct: 59  GKSTSTSALVTAYRKQGRRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMATR 118

Query: 176 SDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                LA+   +A +   A   DV++++T G   +                 +   A  S
Sbjct: 119 GHLGGLAWAAPQAIRVLDAAGCDVILVETVGVGQSEVE--------------IASQADTS 164

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           V+ +       + ++  +      G    ++ K D   
Sbjct: 165 VVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 199


>gi|332017874|gb|EGI58534.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 [Acromyrmex
           echinatior]
          Length = 456

 Score = 42.5 bits (99), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           +    +F ++PHVI +VG+   GKT +  KL + ++  G+   +     +R  A    + 
Sbjct: 26  RGERANFVNKPHVIAMVGLPARGKTYISKKLCRYLNWIGISTKVFNLGEYRRHATTAYQC 85

Query: 161 W 161
            
Sbjct: 86  H 86


>gi|307169148|gb|EFN61964.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 [Camponotus
           floridanus]
          Length = 465

 Score = 42.5 bits (99), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           +    +F ++PHVI +VG+   GKT +  KL + ++  G+   +     +R  A    + 
Sbjct: 26  RGERANFVNKPHVIAMVGLPARGKTYISKKLCRYLNWIGISTKVFNLGEYRRHATTAYQC 85

Query: 161 W 161
            
Sbjct: 86  H 86


>gi|149194423|ref|ZP_01871520.1| hypothetical protein CMTB2_07476 [Caminibacter mediatlanticus TB-2]
 gi|149135598|gb|EDM24077.1| hypothetical protein CMTB2_07476 [Caminibacter mediatlanticus TB-2]
          Length = 372

 Score = 42.5 bits (99), Expect = 0.081,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 86/254 (33%), Gaps = 41/254 (16%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV-------EELLTKR 74
                KLKE I        +D G  +E+E       +     + I+       ++++ ++
Sbjct: 3   EKILEKLKEVIYPGFKKSVIDFGFVKEVE-------VSEDNKKAIITYQIPSTDDVVAQK 55

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              D ++ ++     E   +++ P       S+  N   + +  V++  G  GVGK+T  
Sbjct: 56  L-NDATIDKLKEIGIEATTQIIRPKKPRETSSRGVNKMPNVKSFVMVSSGKGGVGKSTTA 114

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+  ++  G KV +  GD +       L               +      +     K 
Sbjct: 115 VNLALSLAKEGKKVGILDGDIYGPNVARML--------------GMADKKPEVVGNKVKP 160

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR--LDPHAPHSVLQVLDA--TTGQN 244
            +     V  I  A  L     LM     +++ L++   D       + V+D    TG  
Sbjct: 161 FENYG--VKFISMANLLPEGKALMWRGAMLVKALQQFMEDVDWGELDILVIDMPPGTGDA 218

Query: 245 ALRQVEMFHAVAGT 258
            +   +     AG 
Sbjct: 219 QMTMAQQVPVTAGV 232


>gi|332376621|gb|AEE63450.1| unknown [Dendroctonus ponderosae]
          Length = 476

 Score = 42.5 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           LM +      ++ + PHVI +VG+   GKT +  KLS+ ++  G+   +     +R  A 
Sbjct: 28  LMSIRIGERANYVNSPHVIAMVGLPARGKTYISKKLSRYLNWIGINTRVFNLGEYRRHAT 87

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
              +        DF   +     A  A  A +  +   
Sbjct: 88  SAYQSH------DFFRPDNAEAMAIRAQCAIEALKDVC 119


>gi|116073134|ref|ZP_01470396.1| possible ThiF family protein [Synechococcus sp. RS9916]
 gi|116068439|gb|EAU74191.1| possible ThiF family protein [Synechococcus sp. RS9916]
          Length = 344

 Score = 42.5 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 39  RRLDDGVREEL---EDLLIR-SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           + +DD + EE      +L+  +D+G+   Q+I + L+ +  +  ++ Q       E I +
Sbjct: 146 KLMDDDLLEETNLPRVVLLEEADVGLPKVQQIQKRLMDRNSSCKIAFQESKIKSHEEIAE 205

Query: 95  MLMPLSKPFNWDFSHRPHVI 114
            L              P  I
Sbjct: 206 FLGDCDAWV-LSADSPPKTI 224


>gi|313682138|ref|YP_004059876.1| ATPase AAA [Sulfuricurvum kujiense DSM 16994]
 gi|313154998|gb|ADR33676.1| AAA ATPase central domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 555

 Score = 42.5 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 28/170 (16%)

Query: 85  LYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + DV E + +++  L  P  +    +  P  +L+VG  GVGK T+I K            
Sbjct: 162 IGDVKEELEEIIDFLRNPKRYYSFGARMPRGVLLVGPPGVGK-TMIAK-----------A 209

Query: 143 MLAAGD---TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
           + A  D    ++S A          +             + L   A K A A    +  I
Sbjct: 210 VAAEADVPFFYQSGA----------SFVQIYVGMGAKRVSELFSAAKKNAPAIIF-IDEI 258

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           D  G+           G + ++L  +D     S + V+ AT   + +   
Sbjct: 259 DAVGKKREGGRNDEREGTLNQLLTEMDGFEETSGIVVIAATNNIDVMDAA 308


>gi|29374967|ref|NP_814120.1| hypothetical protein EF0328 [Enterococcus faecalis V583]
 gi|29342425|gb|AAO80191.1| conserved hypothetical protein [Enterococcus faecalis V583]
          Length = 812

 Score = 42.5 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 32/119 (26%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I  I++  ++DD + +E+E             ++ +E L              +  V 
Sbjct: 450 EKIYGIVNRGKIDDALVQEIERN------SYDPVKEYLESL----------HWDGVPRVE 493

Query: 90  ELIHKMLMPLSKPFNWDFSHR--------------PHVILVV--GVNGVGKTTVIGKLS 132
            L+   L     PF    + +                  ++V  G  G+GKT +  KL+
Sbjct: 494 TLLIDYLGAEDTPFIRVVTKKFLTAAVGRIFVPGIKFDYMLVTSGPQGIGKTLLPAKLA 552


>gi|326927608|ref|XP_003209983.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16-like [Meleagris gallopavo]
          Length = 1130

 Score = 42.5 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 35/153 (22%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSD--IGVAVAQKIVEELLTK-------RYAKDV 79
              + DI+  ++      EE +D ++  D  +     QK  E +  K          K +
Sbjct: 375 GTKLGDIMGIKK------EEEKDEMVTEDGKVDYRTEQKFAEHMKEKSEARSEFAKKKSI 428

Query: 80  SVQRV---LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
             QR    ++ V + +  +L   S            +++VVG  G GKTT   +L++ + 
Sbjct: 429 LEQRQYLPIFAVQQELLSILRDNS------------IVIVVGETGSGKTT---QLTQYLH 473

Query: 137 DAGLKVMLAAGDTF--RSAAIDQLKIWADRTSA 167
           + G       G T   R AA+   K  ++    
Sbjct: 474 EDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGV 506


>gi|116310346|emb|CAH67360.1| OSIGBa0134P10.6 [Oryza sativa Indica Group]
 gi|125548217|gb|EAY94039.1| hypothetical protein OsI_15818 [Oryza sativa Indica Group]
          Length = 699

 Score = 42.5 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 69/209 (33%), Gaps = 14/209 (6%)

Query: 64  QKIVEELLTKRYA---KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            + + E+  K  A   K V      +DV+      + P+    N         I  VG +
Sbjct: 434 TRFIPEVRDKATAVHLKYVKGDINFHDVTFQYIDGMPPILDGVNLHIRSGET-IAFVGPS 492

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT+   L +        ++L   D      I  +++   RT   FV  +    +  
Sbjct: 493 GGGKTTLAKLLLRLYQPQSGYILLDNCD------IRDIQLQCLRTHIAFVSQDAMLLSGT 546

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI----LMAGIGKMIRVLKRLDPHAPHSVLQV 236
           +A           +D+  +++A ++ N       L  G    +              L +
Sbjct: 547 IAENIAYGDPMGAIDMSKVESAAKIANAEEFIKMLPGGYNSYVGQKGSSLSGGQKQRLSI 606

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             A    +++  ++   +       I+ K
Sbjct: 607 ARAIYQNSSVLILDEATSALDNRSEILVK 635


>gi|21223760|ref|NP_629539.1| transport system kinase [Streptomyces coelicolor A3(2)]
 gi|256785146|ref|ZP_05523577.1| transport system kinase [Streptomyces lividans TK24]
 gi|6808393|emb|CAB70630.1| putative transport system kinase [Streptomyces coelicolor A3(2)]
          Length = 318

 Score = 42.5 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 32/218 (14%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              +V +    R      +  ++   S  + +++  L+       +   +V+ + G  GV
Sbjct: 4   VSSLVAQAREGRPRAVARLISLVEGASPQLREVMEALA-----PLTGNAYVVGLTGSPGV 58

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIG 175
           GK+T    L       G +V + A D        A+      +   A             
Sbjct: 59  GKSTSTSALVTAYRKQGRRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMATR 118

Query: 176 SDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                LA+   +A +   A   DV++++T G   +                 +   A  S
Sbjct: 119 GHLGGLAWAAPQAIRVLDAAGCDVVLVETVGVGQSEVE--------------IASQADTS 164

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           V+ +       + ++  +      G    ++ K D   
Sbjct: 165 VVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 199


>gi|83953303|ref|ZP_00962025.1| urease accessory protein UreG [Sulfitobacter sp. NAS-14.1]
 gi|83842271|gb|EAP81439.1| urease accessory protein UreG [Sulfitobacter sp. NAS-14.1]
          Length = 209

 Score = 42.5 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 27/183 (14%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQL 158
            H P  I + G  G GKTT    L + M D    + +   D +         R   + Q 
Sbjct: 4   PHGPLRIGIGGPVGAGKTTTTAALCRAMRDR-WSIGVITNDIYTQEDAEALMRLQVLPQD 62

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +I    T      +     +  LA  A  + +   +D ++I++ G       L A     
Sbjct: 63  RIIGVETGGCPHTAIREDASINLAAVARMRDRHPDLDCVLIESGG-----DNLSATFS-- 115

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
                   P      L V+D   G+   R  +   A+  +  LI+ K D     G  + +
Sbjct: 116 --------PELADVTLYVIDVAAGEEIPR--KGGPAITKSDILIINKTDLAPHVGASLEV 165

Query: 279 VVT 281
           +  
Sbjct: 166 MDR 168


>gi|315574064|gb|EFU86255.1| virulence-associated protein E [Enterococcus faecalis TX0309B]
 gi|315582009|gb|EFU94200.1| virulence-associated protein E [Enterococcus faecalis TX0309A]
          Length = 810

 Score = 42.5 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 32/119 (26%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           E I  I++  ++DD + +E+E             ++ +E L              +  V 
Sbjct: 450 EKIYGIVNRGKIDDALAQEIERN------SYDPVKEYLESL----------HWDGVPRVE 493

Query: 90  ELIHKMLMPLSKPFNWDFSHR--------------PHVILVV--GVNGVGKTTVIGKLS 132
            L+   L     PF    + +                  ++V  G  G+GKT +  KL+
Sbjct: 494 TLLIDYLGAEDTPFIRVVTKKFLTAAVGRIFVPGIKFDYMLVTSGPQGIGKTLLPAKLA 552


>gi|312375083|gb|EFR22519.1| hypothetical protein AND_15087 [Anopheles darlingi]
          Length = 790

 Score = 42.5 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++
Sbjct: 349 EDVKGCDEAKQELKEVVEFLKNPGKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVA 403

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                   A    F +A  +  ++            +       L   A ++A      +
Sbjct: 404 GE------AGVPFFHAAGPEFDEVL---------VGQGARRVRDLFKAAKERAPCVIF-I 447

Query: 197 LIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
             ID+ G    NS+L       + ++L  +D    +  + VL AT  ++ L Q  +    
Sbjct: 448 DEIDSVGAKRTNSVLHPYANQTINQLLSEMDGFQQNEGVIVLGATNRRDDLDQALLRPGR 507

Query: 256 AGTTGLIMT 264
                ++ T
Sbjct: 508 FDVEVVVPT 516


>gi|194884696|ref|XP_001976314.1| GG20087 [Drosophila erecta]
 gi|190659501|gb|EDV56714.1| GG20087 [Drosophila erecta]
          Length = 737

 Score = 42.5 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 22/189 (11%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++
Sbjct: 301 EDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVA 355

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                        F +A  +  ++         V                +      +D 
Sbjct: 356 GEAKVP------FFHAAGPEFDEVL--------VGQGARRVRDLFKAAKARAPCVIFIDE 401

Query: 197 LIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
             ID+ G    NS+L       + ++L  +D    ++ + VL AT  ++ L Q  +    
Sbjct: 402 --IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGR 459

Query: 256 AGTTGLIMT 264
                ++ T
Sbjct: 460 FDVEVMVST 468


>gi|289769039|ref|ZP_06528417.1| LAO/AO transport system ATPase [Streptomyces lividans TK24]
 gi|289699238|gb|EFD66667.1| LAO/AO transport system ATPase [Streptomyces lividans TK24]
          Length = 319

 Score = 42.5 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 32/218 (14%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              +V +    R      +  ++   S  + +++  L+       +   +V+ + G  GV
Sbjct: 5   VSSLVAQAREGRPRAVARLISLVEGASPQLREVMEALA-----PLTGNAYVVGLTGSPGV 59

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIG 175
           GK+T    L       G +V + A D        A+      +   A             
Sbjct: 60  GKSTSTSALVTAYRKQGRRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMATR 119

Query: 176 SDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                LA+   +A +   A   DV++++T G   +                 +   A  S
Sbjct: 120 GHLGGLAWAAPQAIRVLDAAGCDVVLVETVGVGQSEVE--------------IASQADTS 165

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           V+ +       + ++  +      G    ++ K D   
Sbjct: 166 VVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 200


>gi|225872484|ref|YP_002753939.1| chain length determinant family protein [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792516|gb|ACO32606.1| chain length determinant family protein [Acidobacterium capsulatum
           ATCC 51196]
          Length = 785

 Score = 42.5 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 109 HRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            R  VILV G   G GK+TV  +L++  +    +V+L   D FRSA  +
Sbjct: 595 RRAQVILVTGPAGGEGKSTVAAQLARAFAWQKSRVLLVEAD-FRSAGQE 642


>gi|169333783|ref|ZP_02860976.1| hypothetical protein ANASTE_00168 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259632|gb|EDS73598.1| hypothetical protein ANASTE_00168 [Anaerofustis stercorihominis DSM
           17244]
          Length = 548

 Score = 42.5 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           + + +   + +L +   EE +  L   D+GV      +  L  K    ++     L   S
Sbjct: 212 DKVHEFFDNPKLFEE-YEEFDKWL--KDVGVTN----IASLNKKIENNEI---EELILAS 261

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           E  H+ L+  +         +  +IL+ G +  GKTT   +L   +   GL  +    D 
Sbjct: 262 EARHEYLIAKAADKIITSKDKKRIILIAGPSSSGKTTTSKRLQTHLMARGLSPVTIGLDD 321

Query: 150 F 150
           +
Sbjct: 322 Y 322


>gi|330718118|ref|ZP_08312718.1| guanylate kinase [Leuconostoc fallax KCTC 3537]
          Length = 199

 Score = 42.5 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 18/138 (13%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
               V ++ G  GVGKTT    +++ +      +      T R    ++ K   D     
Sbjct: 3   KNKKVFVITGATGVGKTT----IARYLQ-ENYHMPRIITHTTRP-PRNREKQNIDYYFET 56

Query: 169 FVCSEIGSDAAALAYEAFKQA----------QAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
               E       +AY  F+            +      +++DTAG +     L      +
Sbjct: 57  PASFEEKHYLERVAYAGFQYGSSYEGLNHAWEKSDYTTIVLDTAGAVTYARELGNQAVIL 116

Query: 219 IRVLKRLDPHAPHSVLQV 236
              +    P      +QV
Sbjct: 117 --FITVAHPDTLIERVQV 132


>gi|297790336|ref|XP_002863066.1| hypothetical protein ARALYDRAFT_497178 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297308874|gb|EFH39325.1| hypothetical protein ARALYDRAFT_497178 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 832

 Score = 42.5 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 15/85 (17%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           + EE+E+LL + D  V VAQKI+ +   K     V +  ++    E +   +    +   
Sbjct: 110 MLEEVEELLSKKDF-VEVAQKIIRKAEKKHIQTTVGLDTLVEMAWESV---MNDEIRTLG 165

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIG 129
                      + G+ GVGKTT++ 
Sbjct: 166 -----------LYGMGGVGKTTLLA 179


>gi|328706632|ref|XP_003243157.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase-like
           isoform 2 [Acyrthosiphon pisum]
          Length = 475

 Score = 42.5 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 2/117 (1%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
            ++ + PHVI +VG+   GKT +  KLS+ ++  G+   +     +R  A    K   + 
Sbjct: 21  LNYVNTPHVIAMVGLPARGKTYISKKLSRYLNWIGINTKVFNLGEYRRHATTAYKCH-EF 79

Query: 165 TSADFVCSEIGSDAAAL-AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
              D V +       A+ A +          +V + D          L+  I    R
Sbjct: 80  FRPDNVEAMAIRTQCAIDALDDVCTWLDNGGEVAVFDATNSTIERRQLILEIVVKKR 136


>gi|226355689|ref|YP_002785429.1| arginine/ornithine transport system ATPase [Deinococcus deserti
           VCD115]
 gi|226317679|gb|ACO45675.1| putative LAO/AO transport system kinase (LAO/AO transport system
           ATPase) (ArgK) [Deinococcus deserti VCD115]
          Length = 323

 Score = 42.5 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 31/209 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +  AK +++        E   + L+    P           + + GV GVGK+T I  L 
Sbjct: 16  RALAKAITLSESTRPEHEAQAQQLLAEVTPQAVPSIR----VGLTGVPGVGKSTFIEALG 71

Query: 133 KKMSDAGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALA 182
             ++DAG +V + A D  + R+          + +L +                      
Sbjct: 72  LHLADAGHRVAVLAVDPSSVRTGGSIMGDKTRMPRLTVHPGAFIRPSPSGGALGGVTRRT 131

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            EA    +A   DVL+++T G   + + +                     VL  L     
Sbjct: 132 REAIALCEAAGYDVLLVETVGVGQSETQVANMTDLF--------------VLLTLPNA-- 175

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
            + L+ ++           ++ K D   +
Sbjct: 176 GDELQGIKRGIMELA-DLCVVNKADSDPK 203


>gi|126734725|ref|ZP_01750471.1| urease accessory protein UreG [Roseobacter sp. CCS2]
 gi|126715280|gb|EBA12145.1| urease accessory protein UreG [Roseobacter sp. CCS2]
          Length = 216

 Score = 42.5 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 77/213 (36%), Gaps = 35/213 (16%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLK 159
           + P  I + G  G GKTT+   ++K +      V +   D +         R   + Q +
Sbjct: 5   NGPLRIGIGGPVGAGKTTLTAAIAKALHPQ-YSVGVITNDIYTQEDAEALMRMQILPQDR 63

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +    T      +     +  LA  A  Q +   +D+++I++ G       L A      
Sbjct: 64  VIGVETGGCPHTAIREDASINLAAVAEMQRRHDDLDLVLIESGG-----DNLSATFS--- 115

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
                  P      + V+D   G+   R  +   A+  +  L++ K D     G  + ++
Sbjct: 116 -------PELADITIYVIDVAAGEEIPR--KGGPAITRSDLLVINKTDLAPYVGASLDVM 166

Query: 280 V------THKIPVYFLGV--GEGINDLEPFVAK 304
                      P  F  +  G+G++D+  FV +
Sbjct: 167 KRDSTQMRGNRPFAFCALKHGKGVDDVVQFVIE 199


>gi|195488933|ref|XP_002092523.1| GE11626 [Drosophila yakuba]
 gi|194178624|gb|EDW92235.1| GE11626 [Drosophila yakuba]
          Length = 735

 Score = 42.5 bits (99), Expect = 0.091,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 22/189 (11%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++
Sbjct: 299 EDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVA 353

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                        F +A  +  ++         V                +      +D 
Sbjct: 354 GEAKVP------FFHAAGPEFDEVL--------VGQGARRVRDLFKAAKARAPCVIFIDE 399

Query: 197 LIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
             ID+ G    NS+L       + ++L  +D    ++ + VL AT  ++ L Q  +    
Sbjct: 400 --IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGR 457

Query: 256 AGTTGLIMT 264
                ++ T
Sbjct: 458 FDVEVMVST 466


>gi|328706634|ref|XP_001945856.2| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase-like
           isoform 1 [Acyrthosiphon pisum]
          Length = 489

 Score = 42.5 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 2/117 (1%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
            ++ + PHVI +VG+   GKT +  KLS+ ++  G+   +     +R  A    K   + 
Sbjct: 21  LNYVNTPHVIAMVGLPARGKTYISKKLSRYLNWIGINTKVFNLGEYRRHATTAYKCH-EF 79

Query: 165 TSADFVCSEIGSDAAAL-AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
              D V +       A+ A +          +V + D          L+  I    R
Sbjct: 80  FRPDNVEAMAIRTQCAIDALDDVCTWLDNGGEVAVFDATNSTIERRQLILEIVVKKR 136


>gi|303391441|ref|XP_003073950.1| AAA ATPase proteasome regulatory subunit YTA6 [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303303099|gb|ADM12590.1| AAA ATPase proteasome regulatory subunit YTA6 [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 425

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM-LMPLSKP-FNWDFSHRPHVILVVGV 119
           +  +I  E+L K           L DV + I+++ L P+ +P         P  +L+ G 
Sbjct: 136 IVDRIRNEILEKVMDIGWDDIIGLKDVKKTINEIVLWPMQRPDLFTGLRGPPKGLLLFGP 195

Query: 120 NGVGKTTVIGK 130
            G GK T+IGK
Sbjct: 196 PGTGK-TMIGK 205


>gi|157737374|ref|YP_001490057.1| cell division protein FtsH [Arcobacter butzleri RM4018]
 gi|157699228|gb|ABV67388.1| cell division protein FtsH [Arcobacter butzleri RM4018]
          Length = 490

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++ + +    KDV+  R + +  E I   L   +K   +     P  +L+VG  GVGKT 
Sbjct: 103 IQAVTSNVTFKDVAGIREIKEELEEIVDFLNNPNKYLKYGVKL-PKGVLLVGPPGVGKT- 160

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
               +++ ++             ++S A          +               L  +A 
Sbjct: 161 ---LIARAVAGEADVPF-----FYQSGA----------SFVHIYVGMGAKKVRELFAKAK 202

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           + A +    +  ID  G++ +          +  +L ++D     S + V+ AT     L
Sbjct: 203 QSAPSIVF-IDEIDAVGKMRSGKSNDEREATLNELLTQMDGFDGESGVIVIAATNKIEVL 261

Query: 247 RQV 249
              
Sbjct: 262 DDA 264


>gi|109947137|ref|YP_664365.1| cell division protein FtsH3 [Helicobacter acinonychis str. Sheeba]
 gi|109714358|emb|CAJ99366.1| cell division protein FtsH3 [Helicobacter acinonychis str. Sheeba]
          Length = 550

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 22/175 (12%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +V E + +++  L  P  +       P  +L++G  GVGKT     ++K ++      
Sbjct: 167 VSEVKEELLEVIDYLKNPRKYQDLGIFLPKGVLLIGPPGVGKTM----IAKALASEAKVP 222

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
                 +    A  Q+ + A       +       A ++ +          +D   ID  
Sbjct: 223 FFYESGS----AFSQIYVGAGAKKVHELFMHAKKHAPSIIF----------IDE--IDAL 266

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           G+             + ++L  +D    +  + V+ AT     + +  +      
Sbjct: 267 GKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFD 321


>gi|71895493|ref|NP_001025753.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Gallus
           gallus]
 gi|53130151|emb|CAG31445.1| hypothetical protein RCJMB04_6i5 [Gallus gallus]
          Length = 1230

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 35/153 (22%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSD--IGVAVAQKIVEELLTK-------RYAKDV 79
              + DI+  ++      EE +D ++  D  +     QK  E +  K          K +
Sbjct: 475 GTKLGDIMGIKK------EEEKDEMVTEDGKVDYRTEQKFAEHMKEKSEARSEFAKKKSI 528

Query: 80  SVQRV---LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
             QR    ++ V + +  +L   S            +++VVG  G GKTT   +L++ + 
Sbjct: 529 LEQRQYLPIFAVQQELLSILRDNS------------IVIVVGETGSGKTT---QLTQYLH 573

Query: 137 DAGLKVMLAAGDTF--RSAAIDQLKIWADRTSA 167
           + G       G T   R AA+   K  ++    
Sbjct: 574 EDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGV 606


>gi|21655205|gb|AAM28917.1| putative TIR/NBS/LRR disease resistance protein [Pinus taeda]
          Length = 987

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 4/157 (2%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +++V+ +L K     ++V      + E + +    +    N   S    VI +VG+ G G
Sbjct: 183 EQVVKGVLEKVKRP-LNVSTYPTGLDEKVAEFERAML--LNQQSSRETRVIGIVGLGGAG 239

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT + K       +  K +    D   +AA   LK             ++G D+     
Sbjct: 240 KTT-LAKEIFNRRRSNYKQIYFQSDVRENAARKSLKSLQKLILKHLAKVDVGIDSTDDGI 298

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           E  ++        LI+D          L+  +  ++R
Sbjct: 299 EKLRRYLQSSHAFLILDDVDHFQQVEALLLPVRDVVR 335


>gi|83944262|ref|ZP_00956717.1| urease accessory protein UreG [Sulfitobacter sp. EE-36]
 gi|83844806|gb|EAP82688.1| urease accessory protein UreG [Sulfitobacter sp. EE-36]
          Length = 209

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 27/183 (14%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQL 158
            H P  I + G  G GKTT    L + M D    + +   D +         R   + Q 
Sbjct: 4   PHGPLRIGIGGPVGAGKTTTTAALCRAMRDR-WSIGVITNDIYTQEDAEALMRLQVLPQD 62

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +I    T      +     +  LA  A  + +   +D ++I++ G       L A     
Sbjct: 63  RIIGVETGGCPHTAIREDASINLAAVARMRDRHPDLDCVLIESGG-----DNLSATFS-- 115

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
                   P      L V+D   G+   R  +   A+  +  LI+ K D     G  + +
Sbjct: 116 --------PELADVTLYVIDVAAGEEIPR--KGGPAITKSDILIINKTDLAPHVGASLEV 165

Query: 279 VVT 281
           +  
Sbjct: 166 MDR 168


>gi|147841678|emb|CAN73064.1| hypothetical protein VITISV_003258 [Vitis vinifera]
          Length = 1567

 Score = 42.5 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            V ++IV  ++ +   + +SV + +  +S  + K+   ++   N     +  VI + G  
Sbjct: 159 EVVKEIVNTIIRRLNHQPLSVGKNIVGISVHLEKLKSLMNTELN-----KVRVIGICGTG 213

Query: 121 GVGKTTVIGK 130
           GVGKTT I K
Sbjct: 214 GVGKTT-IAK 222


>gi|19074903|ref|NP_586409.1| PROTEASOME REGULATORY SUBUNIT YTA6 OF THE AAA FAMILY OF ATPASES
           [Encephalitozoon cuniculi GB-M1]
 gi|19069628|emb|CAD26013.1| PROTEASOME REGULATORY SUBUNIT YTA6 OF THE AAA FAMILY OF ATPASES
           [Encephalitozoon cuniculi GB-M1]
          Length = 425

 Score = 42.5 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM-LMPLSKP-FNWDFSHRPHVILVVGV 119
           +  ++  E+L K           L DV + I+++ L P+ +P         P  +L+ G 
Sbjct: 136 IVDRVRNEILEKAVDVGWDDIIGLRDVKKTINEIVLWPMLRPDLFTGLRGPPRGLLLFGP 195

Query: 120 NGVGKTTVIGK 130
            G GK T+IGK
Sbjct: 196 PGTGK-TMIGK 205


>gi|66362530|ref|XP_628231.1| phosphoglycerate kinase family protein [Cryptosporidium parvum Iowa
           II]
 gi|46229706|gb|EAK90524.1| phosphoglycerate kinase family protein [Cryptosporidium parvum Iowa
           II]
          Length = 385

 Score = 42.5 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              V    ++  V+ LI K L+ L      DFS +P++IL+ G +G GK+T+   L+  +
Sbjct: 140 KNKVQKNEIIEKVNHLIKKCLIHLFS----DFSVKPNIILIAGTSGSGKSTISSYLASFL 195

Query: 136 SDAGLKVMLAAGDTFR 151
                   + + DT R
Sbjct: 196 RVK----CVISTDTIR 207


>gi|282856646|ref|ZP_06265914.1| phosphoribulokinase family protein [Pyramidobacter piscolens W5455]
 gi|282585495|gb|EFB90795.1| phosphoribulokinase family protein [Pyramidobacter piscolens W5455]
          Length = 558

 Score = 42.2 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + L  +SE +H   +            R  VI + G +G GKTT   KL  ++  AG + 
Sbjct: 267 KELILMSEALHAQKVAEVTQDFLSVPER-RVITIAGPSGSGKTTTSHKLRIQLEVAGRRP 325

Query: 143 MLAAGDTF 150
           +  + D +
Sbjct: 326 VAISLDDY 333


>gi|207108763|ref|ZP_03242925.1| signal recognition particle protein [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 74

 Score = 42.2 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           E       +A  A K+A+  + DVLI+D+AGRL  +  LM  + ++ 
Sbjct: 28  EENKSVKEIANNALKRAKEAQFDVLIVDSAGRLAIDKELMQELKEVK 74


>gi|330904768|gb|EGH35340.1| cell division protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 49

 Score = 42.2 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           + +    VMLAAGDTFR+AA++QL++W +R     +    
Sbjct: 5   LLEQVKAVMLAAGDTFRAAAVEQLQVWGERNHIPVIAQHT 44


>gi|302782429|ref|XP_002972988.1| hypothetical protein SELMODRAFT_98264 [Selaginella moellendorffii]
 gi|300159589|gb|EFJ26209.1| hypothetical protein SELMODRAFT_98264 [Selaginella moellendorffii]
          Length = 570

 Score = 42.2 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 40/199 (20%)

Query: 57  DI-GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           D+ GV  A+   +ELL     K + +  +++   +++  +   L+  F    +  P  +L
Sbjct: 310 DVAGVDTAK---DELLEVSLRKKLRLPLMVFLFFQIVSCLRGALN--FRSLGAKFPKGVL 364

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           ++G  G GKT     L++ ++        A      ++A +           +       
Sbjct: 365 LIGPPGTGKT----LLARALAGEAGVPFFA------ASASEF---------VEMFVGRGA 405

Query: 176 SDAAALAYEAFKQAQAKKVDVLIID-------TAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +    L   A K A +    V+ ID         GR  N+         + ++L  +D  
Sbjct: 406 ARIRELFTVARKHAPS----VIFIDELDAVGGQRGRGFNDER----DQTLNQLLTEMDGF 457

Query: 229 APHSVLQVLDATTGQNALR 247
              + + VL AT   +AL 
Sbjct: 458 ESGTGVLVLAATNRADALD 476


>gi|159163337|pdb|1WGW|A Chain A, Solution Structure Of The N-Terminal Domain Of Mouse
          Putative Signal Recoginition Particle 54 (Srp54)
          Length = 99

 Score = 42.2 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 22 ASTSLKLKEGITDIISSRRLDDGVR----EELEDLLIRSDIGVAVAQKIVEELL 71
          A    K+   +  + ++  +++ V     +E+   L+ +D+ + + +++ E + 
Sbjct: 8  ADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVK 61


>gi|332673127|gb|AEE69944.1| cell division protein (ftsH) [Helicobacter pylori 83]
          Length = 550

 Score = 42.2 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIEKRENLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMNLESAHKNELENSFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|297795041|ref|XP_002865405.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297311240|gb|EFH41664.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 833

 Score = 42.2 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 15/85 (17%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           + EE+E+LL + D  V VAQKI+ +   K     V +  ++    E +   +    +   
Sbjct: 110 MLEEVEELLSKKDF-VEVAQKIIRKAEKKHIQTTVGLDTLVEMAWESV---MNDEIRTLG 165

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIG 129
                      + G+ GVGKTT++ 
Sbjct: 166 -----------LYGMGGVGKTTLLA 179


>gi|149374293|ref|ZP_01892067.1| hypothetical protein MDG893_09611 [Marinobacter algicola DG893]
 gi|149360996|gb|EDM49446.1| hypothetical protein MDG893_09611 [Marinobacter algicola DG893]
          Length = 326

 Score = 42.2 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 20/158 (12%)

Query: 64  QKIVEELLT---KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            K+ E +     +  A+ ++      D    + + L  L     +  +   HV+ + GV 
Sbjct: 8   MKLAERVREGHLRAIARLITRVESGGDA--EVREALAEL-----YKATGNAHVVGITGVP 60

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKI----WADRTSADFVCSE 173
           G GK+T++ +L  +   +G KV + A D        AI   +I                 
Sbjct: 61  GAGKSTLVTQLVHEYRASGRKVGVVAIDPSSPYSGGAILGDRIRMGDLVSDPGVFIRSMA 120

Query: 174 IGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNN 208
                  LA    +A     A   DV++I+T G   + 
Sbjct: 121 TRGTLGGLARPALDAVDLLDAGGFDVVLIETVGVGQDE 158


>gi|157163907|ref|YP_001467283.1| putative cell division protease FtsH-like protein [Campylobacter
           concisus 13826]
 gi|112801847|gb|EAT99191.1| putative Cell division protease FtsH homolog [Campylobacter
           concisus 13826]
          Length = 641

 Score = 42.2 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A+K++     K    DV+      +  + I   L    K      +  P  IL+VG  G 
Sbjct: 162 AKKLINSEKPKVKFDDVAGVEEAKEEVQEIVDYLKSPDKYLRLG-AKIPKGILLVGPPGT 220

Query: 123 GKT 125
           GKT
Sbjct: 221 GKT 223


>gi|47077090|dbj|BAD18473.1| unnamed protein product [Homo sapiens]
          Length = 184

 Score = 42.2 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           MP  K      ++ P VI++VG+   GKT +  KL++ +   G+   +     +R  A+ 
Sbjct: 1   MPFRKACGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLYWIGVPTKVFNVGEYRREAVK 60

Query: 157 QL 158
           Q 
Sbjct: 61  QY 62


>gi|316935014|ref|YP_004109996.1| LAO/AO transporter ATPase [Rhodopseudomonas palustris DX-1]
 gi|315602728|gb|ADU45263.1| LAO/AO transport system ATPase [Rhodopseudomonas palustris DX-1]
          Length = 330

 Score = 42.2 bits (98), Expect = 0.100,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 19/145 (13%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
              L+ ++L    +      +  P         GVGK+T I  L   +   G KV + A 
Sbjct: 44  ARALVQELLPDTGRAIRVGITGSP---------GVGKSTTIDALGMYLIAQGHKVAVLAV 94

Query: 148 D--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           D  + R+          + +L    +        S      AA   EA    +A   DV+
Sbjct: 95  DPSSARTGGSILGDKTRMARLSAEPNAFIRPSPSSGTLGGVAAKTREAMLLCEAAGFDVV 154

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVL 222
           +++T G   + + +       + ++
Sbjct: 155 LVETVGIGQSETAVCDMTDFFLALM 179


>gi|169828142|ref|YP_001698300.1| arsenical pump-driving ATPase [Lysinibacillus sphaericus C3-41]
 gi|168992630|gb|ACA40170.1| Arsenical pump-driving ATPase [Lysinibacillus sphaericus C3-41]
          Length = 586

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 17/177 (9%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +R    ++ Q V+Y+        +  + +        +P +I  +G  GVGKTTV   ++
Sbjct: 289 ERLQAWMTDQEVVYEDESNEETKIPEIEEMIADYLERKPKLIFTMGKGGVGKTTVASYIA 348

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY---EAFKQA 189
            ++++ G  V L   D    AA   L       +   +        A +A    E   +A
Sbjct: 349 LRLAEEGTHVHLTTTD---PAA--HLNWTFGDDNVKNLTISRIDPKAEVANYEAEVLAKA 403

Query: 190 QAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                +       G       L         + R    +  +    V+ +  A TG 
Sbjct: 404 SETMNE------EGLAFVKEDLASPCTEEIAVFRAFANVVENHQDEVIIIDTAPTGH 454


>gi|154243881|ref|YP_001409454.1| LAO/AO transport system ATPase [Xanthobacter autotrophicus Py2]
 gi|154163003|gb|ABS70218.1| LAO/AO transport system ATPase [Xanthobacter autotrophicus Py2]
          Length = 332

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 10/116 (8%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKIW 161
           +  + R H+I + GV G GK+T++ + ++ +   G KV + A D        +I   ++ 
Sbjct: 45  YRRAGRAHIIGITGVPGSGKSTLVARFAQMLRARGSKVGIVAVDPSSPFSGGSILGDRVR 104

Query: 162 ADRTSAD-------FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
            +    D                 A  A +A         D +II+T G   +   
Sbjct: 105 MNELGMDPGVYIRSMATRGATGGMARAALDAVDVLDVGGFDTVIIETVGVGQDEVE 160


>gi|307718879|ref|YP_003874411.1| hypothetical protein STHERM_c11970 [Spirochaeta thermophila DSM
           6192]
 gi|306532604|gb|ADN02138.1| hypothetical protein STHERM_c11970 [Spirochaeta thermophila DSM
           6192]
          Length = 552

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +   +R    ++E +H+  +          + R  ++LV G +  GKTT   KLS  +  
Sbjct: 254 EARKEREFIQIAEALHEQRISQIASRIAAETPRIKLVLVAGPSSSGKTTFAKKLSMYLKV 313

Query: 138 AGLKVMLAAGDTF 150
            GL+ +  + D +
Sbjct: 314 FGLRPLAISLDNY 326


>gi|217033423|ref|ZP_03438853.1| hypothetical protein HP9810_1g37 [Helicobacter pylori 98-10]
 gi|216944128|gb|EEC23556.1| hypothetical protein HP9810_1g37 [Helicobacter pylori 98-10]
          Length = 550

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIEKRENLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMNLESAHKNELENSFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|195346897|ref|XP_002039991.1| GM15603 [Drosophila sechellia]
 gi|194135340|gb|EDW56856.1| GM15603 [Drosophila sechellia]
          Length = 739

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 22/189 (11%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++
Sbjct: 303 EDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVA 357

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                        F +A  +  ++         V                +      +D 
Sbjct: 358 GEAKVP------FFHAAGPEFDEVL--------VGQGARRVRDLFKAAKARAPCVIFIDE 403

Query: 197 LIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
             ID+ G    NS+L       + ++L  +D    ++ + VL AT  ++ L Q  +    
Sbjct: 404 --IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGR 461

Query: 256 AGTTGLIMT 264
                ++ T
Sbjct: 462 FDVEVMVST 470


>gi|257456039|ref|ZP_05621244.1| phosphoribulokinase family protein [Treponema vincentii ATCC 35580]
 gi|257446562|gb|EEV21600.1| phosphoribulokinase family protein [Treponema vincentii ATCC 35580]
          Length = 512

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           IGV+   ++  E++  R  KD      +     L +  L  +++        +  VIL+ 
Sbjct: 201 IGVSSVGQL-NEIIESRKTKD-----FVEITETLQNNKLAHIAEQIKNKKDVK--VILIA 252

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           G +  GKTT   KLS ++   G +  + + D +
Sbjct: 253 GPSSSGKTTSAKKLSMQLRVVGYEPYVISLDDY 285


>gi|268557976|ref|XP_002636978.1| Hypothetical protein CBG09461 [Caenorhabditis briggsae]
 gi|187031832|emb|CAP29132.1| hypothetical protein CBG_09461 [Caenorhabditis briggsae AF16]
          Length = 457

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR---SAAIDQLKIWADRTSA 167
           P+VI++VG+   GKT +  KL + +   G K  +     +R   + A D   I     S 
Sbjct: 29  PNVIVMVGLPARGKTYISKKLCRYLKWTGFKTKVFNVGEYRRTDANAAD--AIHGANAS- 85

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
               S   ++A  +  E+ ++A     D L
Sbjct: 86  --FFSPDNAEALKVRTESARRAMEDMADYL 113


>gi|291447796|ref|ZP_06587186.1| lysine arginine ornithine transport system kinase [Streptomyces
           roseosporus NRRL 15998]
 gi|291350743|gb|EFE77647.1| lysine arginine ornithine transport system kinase [Streptomyces
           roseosporus NRRL 15998]
          Length = 318

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 71/215 (33%), Gaps = 32/215 (14%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +VE+    R      +  ++   S  + +++  L+       +   +V+ + G  GVGK+
Sbjct: 6   LVEQARAGRPRAVARLISLVEGASPQLREVMAALA-----PLAGHAYVVGLTGSPGVGKS 60

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKI----WADRTSADFVCSEIGSDA 178
           T    L      AG +V + A D        A+   ++     A                
Sbjct: 61  TSTSALVSAYRRAGKRVGVLAVDPSSPFSGGALLGDRVRMSDHASDPGVYIRSMATRGHL 120

Query: 179 AALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
             LA+   +A +   A   DV++++T G   +                 +   A  SV+ 
Sbjct: 121 GGLAWAAPQAIRVLDAAGCDVVLVETVGVGQSEVE--------------IASQADTSVVL 166

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +       + ++  +      G    ++ K D   
Sbjct: 167 LAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 198


>gi|125561448|gb|EAZ06896.1| hypothetical protein OsI_29135 [Oryza sativa Indica Group]
          Length = 1153

 Score = 42.2 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 53/176 (30%), Gaps = 28/176 (15%)

Query: 97  MPLSKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKL----SKKMSDAGLKVMLAAGDT 149
             + +        +P    V+L+VG  GVGKTT+  KL      +             D 
Sbjct: 137 EKIEEWLTTGLGDQPTSWTVVLIVGPGGVGKTTLAKKLYDDFGYRFQHQAFVRTSKRPDR 196

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            R+     +            C E       L  +  K     K  ++++D    +    
Sbjct: 197 -RTTLTSMMSQLQRLEPLHETCDE------KLLIDKMKTHLRGKRCLIVLDNVWTVST-- 247

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
                      V++   P    S + V   TT  N + Q   F+        ++ K
Sbjct: 248 ---------WNVVRHALPEDCCSRIVV---TTEINDVAQAWSFYKSQHNASHVIKK 291


>gi|225433369|ref|XP_002282906.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1059

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            V ++IV  ++ +   + +SV + +  +S  + K+   ++   N        VI + G  
Sbjct: 172 EVVKEIVNTIIRRLNRQPLSVGKNIVGISVHLEKLKSLMNTELN-----EVRVIGICGTG 226

Query: 121 GVGKTTVIGK 130
           GVGKTT I K
Sbjct: 227 GVGKTT-IAK 235


>gi|297202430|ref|ZP_06919827.1| LAO/AO transport system ATPase [Streptomyces sviceus ATCC 29083]
 gi|197710048|gb|EDY54082.1| LAO/AO transport system ATPase [Streptomyces sviceus ATCC 29083]
          Length = 318

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 32/218 (14%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              +V +    R      +  ++   S  + +++  L+       +   +V+ + G  GV
Sbjct: 4   VSTLVAQAREGRPRAVARLISLVEGASPQLREVMEALA-----PLTGNAYVVGLTGSPGV 58

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIG 175
           GK+T    L       G +V + A D        A+      +   A             
Sbjct: 59  GKSTSTSALVTAYRKQGRRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMATR 118

Query: 176 SDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                LA+   +A +   A   DV++++T G   +                 +   A  S
Sbjct: 119 GHLGGLAWAAPQAIRVLDAAGCDVVLVETVGVGQSEVE--------------IASQADTS 164

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           V+ +       + ++  +      G    ++ K D   
Sbjct: 165 VVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 199


>gi|158333590|ref|YP_001514762.1| lipopolysaccharide biosynthesis protein [Acaryochloris marina
           MBIC11017]
 gi|158303831|gb|ABW25448.1| lipopolysaccharide biosynthesis protein, putative [Acaryochloris
           marina MBIC11017]
          Length = 710

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 94/267 (35%), Gaps = 51/267 (19%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRR----------------------LDDGV 45
            +  + + +  K  AST   L E I ++  +                        +   +
Sbjct: 357 EQRQNELERTAKASASTYRNLLEQIQELKVTENQSPLTVSILESATDPEPSKTTFISAAM 416

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR-----VLYDVSELIHKMLMPLS 100
           R  L  +L+ S + V V ++I  +L +K   + V   R      L+D SE     L  LS
Sbjct: 417 RGGLAGILLASGV-VYVLERIDRKLKSKDEIRQVYPYRVLGEIPLFDESEAESLKLPTLS 475

Query: 101 KPFNW---------------DFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVML 144
            P +                   H P V+++   +N  GK+T    L+  ++    +V+L
Sbjct: 476 DPASHLSEAYRMLQSSLKFHGLEHSPRVLMMTSAINQEGKSTTCANLAVSLAQMNHRVLL 535

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
              D  R A+  Q+    ++     +      +         +    K  D L I TAGR
Sbjct: 536 IDADI-RLASQHQIWELGNQEGLTHILLNKHFNYHQ------ELPTHKVADNLEIITAGR 588

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPH 231
           + +N + M    +    ++    H  +
Sbjct: 589 ISSNPLPMLESEQFANFVQVQIEHYDY 615


>gi|261837732|gb|ACX97498.1| metalloprotease [Helicobacter pylori 51]
          Length = 550

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIEKRENLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMNLESAHKNELENSFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|150403644|ref|YP_001330938.1| cobyrinic acid ac-diamide synthase [Methanococcus maripaludis C7]
 gi|150034674|gb|ABR66787.1| Cobyrinic acid ac-diamide synthase [Methanococcus maripaludis C7]
          Length = 289

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF- 150
            KM+   +     + S   H I ++ G  GVGK+TV   L+  ++  G KV +  GD   
Sbjct: 22  KKMMEQQNAQIRNNMSKIKHKIAVMSGKGGVGKSTVTVNLAATLNMMGYKVGVLDGDIHG 81

Query: 151 ----RSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
               +   +DQ++  AD      + +  G    ++
Sbjct: 82  PNIPQMLGVDQIQPMADENGIYPIATPQGIKTMSI 116


>gi|194468353|ref|ZP_03074339.1| type II secretion system protein E [Lactobacillus reuteri 100-23]
 gi|194453206|gb|EDX42104.1| type II secretion system protein E [Lactobacillus reuteri 100-23]
          Length = 325

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            ++  V R +Y ++++    L+P       ++  +  +IL  G  G GKTT + +L++++
Sbjct: 96  GRESLVIRFIYPLNDISFNFLVPHQWDILQEYRQQRGLILFAGPMGAGKTTTMYQLARQL 155

Query: 136 SDA 138
              
Sbjct: 156 LPK 158


>gi|90408036|ref|ZP_01216208.1| putative arsenical pump-driving ATPase(Arsenite-translocating
           ATPase) [Psychromonas sp. CNPT3]
 gi|90310880|gb|EAS38993.1| putative arsenical pump-driving ATPase(Arsenite-translocating
           ATPase) [Psychromonas sp. CNPT3]
          Length = 602

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 63/183 (34%), Gaps = 22/183 (12%)

Query: 51  DLLIRSDIGVAVAQKIVE---------ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
            LL  S + +   +K++          ++   +   +      +   +E  H ++  + +
Sbjct: 277 TLLSNSLVSLDALRKLIATSVDLSFEHDIKNTKKETEKVQSAPIIIDNEAHHSLVCLIDE 336

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
               D       I+++G  GVGKTT+   L+ +++  G  V L   D    AA     + 
Sbjct: 337 LDKLDHGL----IMLMGKGGVGKTTIAAALACELAKRGHNVHLTTSD---PAANLSATLH 389

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
               + +    +   +      +              +D+AG+      L +   + I V
Sbjct: 390 GTLENLEVTRIDPEIETTRYRQKIMLSKGKH------LDSAGKALLEEDLRSPCTEEIAV 443

Query: 222 LKR 224
            + 
Sbjct: 444 FQA 446


>gi|25083981|gb|AAN72146.1| putative cell division control protein [Arabidopsis thaliana]
          Length = 819

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 80/242 (33%), Gaps = 48/242 (19%)

Query: 85  LYDVSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
              + EL   +L P+   +PF       P  IL  G  G GKT    KL+  +++     
Sbjct: 238 KKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKT----KLANAIANE---- 289

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
                     A +   KI A       V      +   L  +A++ A +    +  ID  
Sbjct: 290 ----------AGVPFYKISATEV-ISGVSGASEENIRELFSKAYRTAPSIVF-IDEIDAI 337

Query: 203 GRLHNNSILMAGIGKMIRVLKRLD----------PHAPHSVLQVLDATTGQNALRQVEMF 252
           G    N         + ++L  +D          P +    + V+ AT   +AL      
Sbjct: 338 GSKRENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRR 397

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE-PFVAKDFSAVIT 311
                 T + +T  D  AR   ++ +V             + +  LE PF  K  + +  
Sbjct: 398 SGRFE-TEIALTAPDEDARA-EILSVVA------------QKLR-LEGPFDKKRIARLTP 442

Query: 312 GC 313
           G 
Sbjct: 443 GF 444


>gi|30678379|ref|NP_186810.2| CDC48C; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide
           binding [Arabidopsis thaliana]
 gi|28201773|sp|Q9SS94|CD48C_ARATH RecName: Full=Cell division control protein 48 homolog C;
           Short=AtCDC48c; AltName: Full=Protein EMBRYO DEFECTIVE
           1354
 gi|22531209|gb|AAM97108.1| putative cell division control protein [Arabidopsis thaliana]
 gi|332640174|gb|AEE73695.1| cell division cycle 48C protein [Arabidopsis thaliana]
          Length = 820

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 80/242 (33%), Gaps = 48/242 (19%)

Query: 85  LYDVSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
              + EL   +L P+   +PF       P  IL  G  G GKT    KL+  +++     
Sbjct: 239 KKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKT----KLANAIANE---- 290

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
                     A +   KI A       V      +   L  +A++ A +    +  ID  
Sbjct: 291 ----------AGVPFYKISATEV-ISGVSGASEENIRELFSKAYRTAPSIVF-IDEIDAI 338

Query: 203 GRLHNNSILMAGIGKMIRVLKRLD----------PHAPHSVLQVLDATTGQNALRQVEMF 252
           G    N         + ++L  +D          P +    + V+ AT   +AL      
Sbjct: 339 GSKRENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRR 398

Query: 253 HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE-PFVAKDFSAVIT 311
                 T + +T  D  AR   ++ +V             + +  LE PF  K  + +  
Sbjct: 399 SGRFE-TEIALTAPDEDARA-EILSVVA------------QKLR-LEGPFDKKRIARLTP 443

Query: 312 GC 313
           G 
Sbjct: 444 GF 445


>gi|297742675|emb|CBI35128.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 20/129 (15%)

Query: 41  LDDGVREELEDLLIRSDIGVAV----AQK----IVEELLTK--RYAKDVSVQRVLYDVSE 90
           LDD   E L   LI  D   +      QK    + E +  +  R  K V     L   S 
Sbjct: 83  LDDFATEALRRKLITDDPQPSTSTISTQKGDLDLRENVEGRSNRKRKRVPETTCLVVESR 142

Query: 91  LI-----HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK----MSDAGLK 141
           +       + ++ +         +   VI +VG+ GVGKTT + +L+       +   L+
Sbjct: 143 VYGRETDKEAILEVLLRDELVHDNEVCVIPIVGMGGVGKTT-LAQLAYHDDRVKNHFDLR 201

Query: 142 VMLAAGDTF 150
             +   D F
Sbjct: 202 AWVCVSDDF 210


>gi|239815120|ref|YP_002944030.1| arginine/ornithine transport system ATPase [Variovorax paradoxus
           S110]
 gi|239801697|gb|ACS18764.1| LAO/AO transport system ATPase [Variovorax paradoxus S110]
          Length = 350

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 19/143 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +         EL+  +L      F    S         GV GVGK+T I  L   +  
Sbjct: 33  ESTRADHRAQADELLTALLPRTGNSFRLGIS---------GVPGVGKSTFIETLGLLLIG 83

Query: 138 AGLKVMLAAGD---TFRSAAI-------DQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            G +V +   D   T    +I       ++L +           S      A    EA  
Sbjct: 84  KGHRVAVLTIDPSSTVSGGSILGDKTRMERLSVHERAYIRPSPSSGTLGGVAEKTREAML 143

Query: 188 QAQAKKVDVLIIDTAGRLHNNSI 210
             +A   D++I++T G   + + 
Sbjct: 144 VCEAAGYDIVIVETVGVGQSETA 166


>gi|162147155|ref|YP_001601616.1| chaperone clpB [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544211|ref|YP_002276440.1| ATPase AAA-2 domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785732|emb|CAP55303.1| putative chaperone clpB [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531888|gb|ACI51825.1| ATPase AAA-2 domain protein [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 422

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 48/123 (39%), Gaps = 20/123 (16%)

Query: 15  RKL-TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            +L  KG       + + +  + +   L++ +  E ++ +I +       +++   L  +
Sbjct: 71  ERLARKGLRRRRGWMMDVLARLTNRTALEEMMAREQKETVIDA-------EELAASLRAR 123

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLS 132
              +D           ++   +   L +        +P  I L+ G  G GKT +  +++
Sbjct: 124 VIGQD-----------QVCEDIAAQLRRRMALQVRGKPVGIFLLAGPPGTGKTYLAKQMA 172

Query: 133 KKM 135
           +++
Sbjct: 173 RQL 175


>gi|328751836|gb|AEB39673.1| MIP17311p [Drosophila melanogaster]
          Length = 740

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 22/189 (11%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++
Sbjct: 304 EDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVA 358

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                        F +A  +  ++         V                +      +D 
Sbjct: 359 GEAKVP------FFHAAGPEFDEVL--------VGQGARRVRDLFKAAKARAPCVIFIDE 404

Query: 197 LIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
             ID+ G    NS+L       + ++L  +D    ++ + VL AT  ++ L Q  +    
Sbjct: 405 --IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGR 462

Query: 256 AGTTGLIMT 264
                ++ T
Sbjct: 463 FDVEVMVST 471


>gi|238060749|ref|ZP_04605458.1| LAO/AO transport system ATPase [Micromonospora sp. ATCC 39149]
 gi|237882560|gb|EEP71388.1| LAO/AO transport system ATPase [Micromonospora sp. ATCC 39149]
          Length = 335

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 11/151 (7%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L+ +  A D      L  + E   ++L  ++      ++ +  V+ + G  GVGK+T   
Sbjct: 25  LVERARAGDPRAVARLITLVESGDEVLPRVAAAL-APYAGQAQVVGLTGSPGVGKSTTTN 83

Query: 130 KLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIGSD---AA 179
           +L + +   G +V + A D        AI      ++  A                   +
Sbjct: 84  ELVRALRSRGHRVGVLAVDPSSPFTGGAILGDRVRMQDHATDPGVYIRSMSSRGHLGGLS 143

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           A   +A +  +    DV++++T G       
Sbjct: 144 AATPQAVRVLEGAGCDVVLVETVGVGQAEVE 174


>gi|284992491|ref|YP_003411045.1| LAO/AO transport system ATPase [Geodermatophilus obscurus DSM
           43160]
 gi|284065736|gb|ADB76674.1| LAO/AO transport system ATPase [Geodermatophilus obscurus DSM
           43160]
          Length = 316

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 21/157 (13%)

Query: 65  KIVEELLT---KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            +V        +  A+ +S+          +   L P         +    VI + G  G
Sbjct: 6   DLVARARDGEARAVARLISLVEDASPALREVAAALAP--------HTGSAQVIGLTGSPG 57

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEI 174
           VGK+T    L +   + GL+V + A D        A+      ++  A            
Sbjct: 58  VGKSTTTTALVRAYRERGLRVGVLAVDPSSPFSGGALLGDRVRMQGHAGDAGVYIRSMAS 117

Query: 175 GSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNN 208
                 LA+   +A +   A   DV++++T G   + 
Sbjct: 118 RGHLGGLAWATPQALRVLDAAGCDVVLVETVGVGQSE 154


>gi|194757108|ref|XP_001960807.1| GF11321 [Drosophila ananassae]
 gi|190622105|gb|EDV37629.1| GF11321 [Drosophila ananassae]
          Length = 740

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 22/189 (11%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++
Sbjct: 304 EDVKGCDEAKQELKEVVEFLKNPEKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVA 358

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                        F +A  +  ++         V                +      +D 
Sbjct: 359 GEAKVP------FFHAAGPEFDEVL--------VGQGARRVRDLFKAAKARAPCVIFIDE 404

Query: 197 LIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
             ID+ G    NS+L       + ++L  +D    ++ + VL AT  ++ L Q  +    
Sbjct: 405 --IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGR 462

Query: 256 AGTTGLIMT 264
                ++ T
Sbjct: 463 FDVEVMVST 471


>gi|284991384|ref|YP_003409938.1| LuxR family transcriptional regulator [Geodermatophilus obscurus
           DSM 43160]
 gi|284064629|gb|ADB75567.1| transcriptional regulator, LuxR family [Geodermatophilus obscurus
           DSM 43160]
          Length = 901

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +L+ G+ G+GK+T +G L+ + + AG  V     D
Sbjct: 28  VLLTGLPGIGKSTTVGLLAARFARAGTSVHWVEAD 62


>gi|24658770|ref|NP_726263.1| CG3499 [Drosophila melanogaster]
 gi|15291271|gb|AAK92904.1| GH14313p [Drosophila melanogaster]
 gi|23240115|gb|AAM71132.2| CG3499 [Drosophila melanogaster]
 gi|220945266|gb|ACL85176.1| CG3499-PB [synthetic construct]
 gi|220954998|gb|ACL90042.1| CG3499-PB [synthetic construct]
          Length = 736

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 22/189 (11%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++
Sbjct: 300 EDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVA 354

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                        F +A  +  ++         V                +      +D 
Sbjct: 355 GEAKVP------FFHAAGPEFDEVL--------VGQGARRVRDLFKAAKARAPCVIFIDE 400

Query: 197 LIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
             ID+ G    NS+L       + ++L  +D    ++ + VL AT  ++ L Q  +    
Sbjct: 401 --IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGR 458

Query: 256 AGTTGLIMT 264
                ++ T
Sbjct: 459 FDVEVMVST 467


>gi|10835832|pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase
 gi|15988419|pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase In Complex With Mg-Adp-Alf3
 gi|15988420|pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase
 gi|15988421|pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase
 gi|15988422|pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase In Complex With Amp-Pnp
 gi|15988423|pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase In Complex With Amp-Pnp
          Length = 589

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ +++D G  V L   D    AA   + +     +      +
Sbjct: 330 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAAHLSMTLNGSLNNLQVSRID 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    +      +D AG+      L +   + I V + 
Sbjct: 387 PHEETERYRQHVLETKGKE------LDEAGKRLLEEDLRSPCTEEIAVFQA 431


>gi|124028179|ref|YP_001013499.1| adenylate kinase [Hyperthermus butylicus DSM 5456]
 gi|123978873|gb|ABM81154.1| Adenylate kinase [Hyperthermus butylicus DSM 5456]
          Length = 205

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAIDQLKIWADRT-SADF 169
            ++V GV GVGKTTV+G++++K+   G++  +       FR A+   L    D       
Sbjct: 9   TVIVTGVPGVGKTTVLGRVAEKLRSKGVRFEIVNFGDYMFREASAAGLVRHRDEMRHLPL 68

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  ++AA A  A   ++     VL++DT
Sbjct: 69  RRQLELQESAARAIIADASSKLGGDGVLLVDT 100


>gi|242011577|ref|XP_002426525.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase short form,
           putative [Pediculus humanus corporis]
 gi|212510651|gb|EEB13787.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase short form,
           putative [Pediculus humanus corporis]
          Length = 456

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 40/114 (35%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           ++ + PHVI +VG+   GKT +  KLS+ ++  G+   +     +R  A    K      
Sbjct: 26  NYVNSPHVIAMVGLPARGKTYISKKLSRYLNWIGINTKVFNLGEYRRHATSAYKSHEFFR 85

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             +     I +     A +   +      +V + D          ++       
Sbjct: 86  QDNLEAMAIRTQCCKEALKDVCKWLENGGEVAVFDATNSTMERRKMIHDFVVCK 139


>gi|225448018|ref|XP_002271783.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1187

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 34/130 (26%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLD---DGVREELE------DLL-IRSDIGVAVAQK- 65
           L +   S S      + +II    ++   + + + LE      D+L ++  +G  ++++ 
Sbjct: 73  LRRKMESDSQ---TQVRNIIFGEGIESRVEEITDTLEYLSQKKDVLGLKKGVGENLSKRW 129

Query: 66  ----IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
               +V+E  +  Y +DV+         E I K L+  +   N     +  VI +VG+ G
Sbjct: 130 PTTSLVDE--SGVYGRDVN--------REEIVKFLLSHNTSGN-----KISVIALVGMGG 174

Query: 122 VGKTTVIGKL 131
           +GKTT + KL
Sbjct: 175 IGKTT-LAKL 183


>gi|147781713|emb|CAN76297.1| hypothetical protein VITISV_037994 [Vitis vinifera]
          Length = 1189

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 34/130 (26%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLD---DGVREELE------DLL-IRSDIGVAVAQK- 65
           L +   S S      + +II    ++   + + + LE      D+L ++  +G  ++++ 
Sbjct: 95  LRRKMESDSQ---TQVRNIIFGEGIESRVEEITDTLEYLSQKKDVLGLKKGVGENLSKRW 151

Query: 66  ----IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
               +V+E  +  Y +DV+         E I K L+  +   N     +  VI +VG+ G
Sbjct: 152 PTTSLVDE--SGVYGRDVN--------REEIVKFLLSHNTSGN-----KISVIALVGMGG 196

Query: 122 VGKTTVIGKL 131
           +GKTT + KL
Sbjct: 197 IGKTT-LAKL 205


>gi|220930146|ref|YP_002507055.1| hypothetical protein Ccel_2777 [Clostridium cellulolyticum H10]
 gi|220000474|gb|ACL77075.1| conserved hypothetical protein [Clostridium cellulolyticum H10]
          Length = 271

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + +  LS+  + + +  P V+ V G  G GKTTV  KL+K ++D    V L   D
Sbjct: 12  RNIGGLSEKSDTEIA--PQVLAVWGSPGSGKTTVAVKLAKYLADKRKNVALLLCD 64


>gi|39934898|ref|NP_947174.1| arginine/ornithine transport system ATPase [Rhodopseudomonas
           palustris CGA009]
 gi|192290426|ref|YP_001991031.1| arginine/ornithine transport system ATPase [Rhodopseudomonas
           palustris TIE-1]
 gi|39648748|emb|CAE27270.1| LAO/AO transport system kinase [Rhodopseudomonas palustris CGA009]
 gi|192284175|gb|ACF00556.1| LAO/AO transport system ATPase [Rhodopseudomonas palustris TIE-1]
          Length = 329

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 19/145 (13%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
              L+  +L    +      +  P         GVGK+T I  L   + + G KV + A 
Sbjct: 43  ARALVQDLLPETGRAIRVGITGSP---------GVGKSTTIDALGMYLIEQGHKVAVLAV 93

Query: 148 D--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           D  + R+          + +L    D        S      AA   EA    +A   DV+
Sbjct: 94  DPSSARTGGSILGDKTRMARLSAEPDAFIRPSPSSGTLGGVAAKTREAMLLCEAAGFDVV 153

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVL 222
           +++T G   + + +       + ++
Sbjct: 154 LVETVGIGQSETAVCDMTDFFLALM 178


>gi|229124039|ref|ZP_04253231.1| Arsenite-translocating ATPase ArsA [Bacillus cereus 95/8201]
 gi|228659341|gb|EEL14989.1| Arsenite-translocating ATPase ArsA [Bacillus cereus 95/8201]
          Length = 588

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 16/181 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E +  K + ++ +      +  ++    L  L +           VI  +G  GVGKTT
Sbjct: 289 IENIR-KLFMENATSNVDKLEAKDIKTTPLKELIENIQQTGQR---VIFTMGKGGVGKTT 344

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAA-IDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           V   ++  + + G KV L   D    AA ++ +        +  V             E 
Sbjct: 345 VASTIAVGLVEKGHKVHLTTTD---PAAHLEHVMRHESLHGSLSVSRIDPKVEVENYREE 401

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
                ++     ++D  G  +    L         + R    +   A + ++ +  A TG
Sbjct: 402 ILNQSSE-----LLDEEGLAYLEEDLRSPCTEEIAIFRAFANIVEKASNEIVVIDTAPTG 456

Query: 243 Q 243
            
Sbjct: 457 H 457


>gi|14591559|ref|NP_143641.1| hypothetical protein PH1806 [Pyrococcus horikoshii OT3]
 gi|3258242|dbj|BAA30925.1| 252aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 252

 Score = 42.2 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 8/114 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI+V G  G GKTT    LS   + +G +V+   GD +       L +     +  +  
Sbjct: 2   AVIVVTGRGGAGKTTTTANLSTYFAQSGYRVLAIDGDLYLPN----LGLHFALDNVKYTL 57

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             I  +       A  + +      + +   G      +L     ++  +++ L
Sbjct: 58  HSIVKNPNMDPEWAIYRHEQTG---VYV-MPGSPRLEDVLGVSGQRLKDIIEHL 107


>gi|257125774|ref|YP_003163888.1| ATPase AAA [Leptotrichia buccalis C-1013-b]
 gi|257049713|gb|ACV38897.1| ATPase AAA-2 domain protein [Leptotrichia buccalis C-1013-b]
          Length = 610

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 14/86 (16%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           + + + E +++              +   L  +   +D    R +  VS +I + +  +S
Sbjct: 276 IKENMWETIDE---------ETVNNLENSLEERVKGQD----RAVKKVSSVIKRAVTGMS 322

Query: 101 KPFNWDFSHRPHVIL-VVGVNGVGKT 125
              +    ++P  IL   G  G GKT
Sbjct: 323 GLQHSSNGNKPKGILFFAGPTGTGKT 348


>gi|224372398|ref|YP_002606770.1| ATP/GTP-binding protein [Nautilia profundicola AmH]
 gi|223590021|gb|ACM93757.1| ATP/GTP-binding protein [Nautilia profundicola AmH]
          Length = 371

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 47/256 (18%)

Query: 61  AVAQKI----VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
            VAQK+    ++ L  +     V++ R                S+  N   + +  V++ 
Sbjct: 51  EVAQKLNDSTIDTLKAEGIEASVNIIRPKKP--------RETSSRGVNKMPNVKSFVMVS 102

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
            G  GVGK+T    L+  ++  G KV +  GD +       L               +  
Sbjct: 103 SGKGGVGKSTTSVNLALALAKQGKKVGILDGDIYGPNISRML--------------GMQD 148

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR--LDPHAPHSVL 234
               +     K  +     V  I  A  L     LM     +++ L++   D       +
Sbjct: 149 RKPEVVGNKVKPFENYG--VKFISMANLLPEGKALMWRGAMLVKALQQFMEDVDWGELDI 206

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIPIVVTHKIPVY--- 287
            V+D   G    +              + T     +D   R    + +     IP+    
Sbjct: 207 LVIDMPPGTGDAQMTMAQQVPVTAGVAVTTPQTVAVDDAKR---SMDMFKQLHIPIAGVI 263

Query: 288 -----FLG--VGEGIN 296
                F+    GE  +
Sbjct: 264 ENMSGFICPNCGEKYD 279


>gi|114220|sp|P08690|ARSA1_ECOLX RecName: Full=Arsenical pump-driving ATPase; AltName:
           Full=Arsenical resistance ATPase; AltName:
           Full=Arsenite-translocating ATPase; AltName:
           Full=Arsenite-transporting ATPase
 gi|151857|gb|AAA21094.1| ArsA [Plasmid R773]
          Length = 583

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ +++D G  V L   D    AA   + +     +      +
Sbjct: 330 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAAHLSMTLNGSLNNLQVSRID 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    +      +D AG+      L +   + I V + 
Sbjct: 387 PHEETERYRQHVLETKGKE------LDEAGKRLLEEDLRSPCTEEIAVFQA 431


>gi|188527092|ref|YP_001909779.1| cell division protein (ftsH) [Helicobacter pylori Shi470]
 gi|188143332|gb|ACD47749.1| cell division protein (ftsH) [Helicobacter pylori Shi470]
          Length = 550

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + V  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESVPIEKRENLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMNLESAHKNELENSFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|147770925|emb|CAN69703.1| hypothetical protein VITISV_018147 [Vitis vinifera]
          Length = 1361

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 24/106 (22%)

Query: 35  IISSRRLDDGVR---EELEDL--------LIRSDIGVAVA---QKIVEELLTKRYAKDVS 80
           +IS +++   ++   +ELE +        L  SD GVA     Q++   L+ +       
Sbjct: 126 VISKKKIGQKIKRITKELEAIVKIKSNLRLSESDGGVASVTDQQRLTSSLVDEA-----E 180

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           V     D  ++I  +L         D + +  VI +VG+ GVGKTT
Sbjct: 181 VYGRDGDKEKIIELLLSD-----ELDTADKVQVIPIVGMGGVGKTT 221


>gi|327401287|ref|YP_004342126.1| AAA ATPase [Archaeoglobus veneficus SNP6]
 gi|327316795|gb|AEA47411.1| AAA ATPase [Archaeoglobus veneficus SNP6]
          Length = 544

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 29/234 (12%)

Query: 31  GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE-----ELLTKRYAKDVSVQRVL 85
            +  +IS     +    ELE  LI  D+ +   +  +E     E+ +K     V      
Sbjct: 79  TLLKLISKPDEKELNLVELE-SLISYDLQIQAIEMAIENSSLPEVTSKSVDGKVEGLDEW 137

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
              + L    L                V+LVVG  G GKTT I K +K  S +G +V++ 
Sbjct: 138 QSSAVLTSLELEDNE------------VLLVVGPPGTGKTTFISKAAKLASSSGSRVLIT 185

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           +  T R  A+D   +   +  A  V +      A L +   + A     D          
Sbjct: 186 SH-TNR--AVD--NVIERQEKAVRVGNPSKLSPAVLKFSLERMASKAVED------EENA 234

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
            +   L     +  R ++R      +  + V             +    +    
Sbjct: 235 SDAEELAELTARKARKIEREMLRIVNDAVIVGATLIKCALFPMADQDFDIVFID 288


>gi|317177101|dbj|BAJ54890.1| cell division protein [Helicobacter pylori F16]
          Length = 550

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIEKRENLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMNLESAHKNELENSFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|160893682|ref|ZP_02074466.1| hypothetical protein CLOL250_01236 [Clostridium sp. L2-50]
 gi|156864667|gb|EDO58098.1| hypothetical protein CLOL250_01236 [Clostridium sp. L2-50]
          Length = 270

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                  +W+  +   ++ V G  G GKTT   KL+ +++     V L   D
Sbjct: 12  GAGDSSPDWEPENENQMLAVWGSPGSGKTTTAVKLAARLAMQKKDVALLLCD 63


>gi|91090384|ref|XP_969497.1| PREDICTED: similar to
           6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase
           short form [Tribolium castaneum]
          Length = 500

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 12/121 (9%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           +    ++ + PHVI +VG+   GKT +  KLS+ ++  G+   +     +R  A    K 
Sbjct: 63  RGERANYVNSPHVIAMVGLPARGKTYISKKLSRYLNWIGINTKVFNLGEYRRHATTAYKN 122

Query: 161 WADRTSADFVC---SEIGSDAAALAYEAFKQAQ---AKKVDVLIIDTAGRLHNNSILMAG 214
                  DF      E  +     A EA +          +V + D          L+  
Sbjct: 123 H------DFFRPDNQEAMALRQQCAREALQDVCKWLESGGEVAVFDATNSTIERRRLIQE 176

Query: 215 I 215
            
Sbjct: 177 Y 177


>gi|282601158|ref|ZP_05980957.2| negative regulator of genetic competence ClpC/MecB [Subdoligranulum
           variabile DSM 15176]
 gi|282570064|gb|EFB75599.1| negative regulator of genetic competence ClpC/MecB [Subdoligranulum
           variabile DSM 15176]
          Length = 750

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 84/247 (34%), Gaps = 27/247 (10%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHVILVV 117
           G+    KI E    +    + +++  +    E +H +   + +   +    HRP   + V
Sbjct: 437 GIPAV-KIQETEYGRLQGLEEALKAHIIGQDEAVHAVAGAIKRARADLSGRHRPASFIFV 495

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVCSEIGS 176
           G  GVGKT ++ +L+ ++            DT     +ID  +       +  + S  G 
Sbjct: 496 GPTGVGKTELVKQLANQL-----------FDTVDPLISIDMSEYMEKYAVSRLIGSPPGY 544

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
                A +  ++ +     V++ D   + H + + +         +             V
Sbjct: 545 VGYDEAGQLTEKVRRHPYSVVLFDEIEKAHPDVMNILLQILDEGKINDAQGRTVDFSNTV 604

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN 296
           +  T+   +  Q       +G TG    K    A     +  +     P  F+G    ++
Sbjct: 605 ICMTSNAGSTDQ-------SGATG--FGKKLEVASADKSLKALQEFLRP-EFIG---RVD 651

Query: 297 DLEPFVA 303
           ++  F  
Sbjct: 652 EIITFHP 658


>gi|223985710|ref|ZP_03635757.1| hypothetical protein HOLDEFILI_03063 [Holdemania filiformis DSM
           12042]
 gi|223962321|gb|EEF66786.1| hypothetical protein HOLDEFILI_03063 [Holdemania filiformis DSM
           12042]
          Length = 206

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
             +P V+++ GV G GKTT    L+K++   G   +    + +R 
Sbjct: 37  PQKPLVVMMCGVAGAGKTT----LAKQLEAEGYLRLSIDEEVWRQ 77


>gi|167645627|ref|YP_001683290.1| hypothetical protein Caul_1663 [Caulobacter sp. K31]
 gi|167348057|gb|ABZ70792.1| conserved hypothetical protein [Caulobacter sp. K31]
          Length = 291

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++ I ++  PL+            V+ + G  G GKTT +  L+  +   GL V + + D
Sbjct: 21  ADEIERLHAPLAARIAAVAMGSAFVVGICGPQGAGKTTTVRVLAALLEAQGLSVAILSLD 80


>gi|157167438|ref|XP_001660693.1| metalloprotease m41 ftsh [Aedes aegypti]
 gi|108873589|gb|EAT37814.1| metalloprotease m41 ftsh [Aedes aegypti]
          Length = 598

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++
Sbjct: 156 EDVKGCDEAKQELKEVVEFLKNPDKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVA 210

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                   A    F +A  +  ++            +       L   A ++A      +
Sbjct: 211 GE------AGVPFFHAAGPEFDEVL---------VGQGARRVRDLFKAAKERAPCVIF-I 254

Query: 197 LIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
             ID+ G    NS+L       + ++L  +D    +  + VL AT  ++ L Q  +    
Sbjct: 255 DEIDSVGAKRTNSVLHPYANQTINQLLSEMDGFQQNEGVIVLGATNRRDDLDQALLRPGR 314

Query: 256 AGTTGLIMT 264
                ++ T
Sbjct: 315 FDVEVVVPT 323


>gi|317010567|gb|ADU84314.1| cell division protein FtsH3 [Helicobacter pylori SouthAfrica7]
          Length = 550

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 22/175 (12%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +V E + +++  L  P  +       P  +L++G  GVGKT     ++K ++      
Sbjct: 167 VNEVKEELLEVIDYLKNPRKYQDLGIFLPKGVLLIGPPGVGKTM----IAKALASEAKVP 222

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
                 +    A  Q+ + A       +       A ++ +          +D   ID  
Sbjct: 223 FFYESGS----AFSQIYVGAGAKKVHELFMHAKKHAPSIIF----------IDE--IDAL 266

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           G+             + ++L  +D    +  + V+ AT     + +  +      
Sbjct: 267 GKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFD 321


>gi|312869613|ref|ZP_07729764.1| ABC transporter, ATP-binding protein [Lactobacillus oris
           PB013-T2-3]
 gi|311094899|gb|EFQ53192.1| ABC transporter, ATP-binding protein [Lactobacillus oris
           PB013-T2-3]
          Length = 608

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            PL + FN   +   H++ +VG  G GKTT+I  L +     G  + L   DT RS   D
Sbjct: 380 EPLIEDFNL-RAQTNHMVAIVGPTGAGKTTIINLLERFYEVQGGHIYLDGQDT-RSMTRD 437

Query: 157 QLKIWADRTSAD-------FVCSEIGSDAAALAYEAFKQAQAKKVD 195
            L+        D          +       A A E ++ A+    D
Sbjct: 438 DLRKHIGMVLQDTWLFTGTIFENIKYGREDATAEEVYRAAKMAYAD 483


>gi|308477483|ref|XP_003100955.1| hypothetical protein CRE_16923 [Caenorhabditis remanei]
 gi|308264299|gb|EFP08252.1| hypothetical protein CRE_16923 [Caenorhabditis remanei]
          Length = 457

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR---SAAIDQLKIWADRTSA 167
           P+VI++VG+   GKT +  KL + +   G K  +     +R   + A D   I     S 
Sbjct: 29  PNVIVMVGLPARGKTYISKKLCRYLKWTGFKTKVFNVGEYRRTDANAAD--AIHGANAS- 85

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
               S   +DA  +  E+ ++A     D L
Sbjct: 86  --FFSPDNADALKVRAESARRAMEDMADYL 113


>gi|152990346|ref|YP_001356068.1| ATP-binding protein Mrp [Nitratiruptor sp. SB155-2]
 gi|151422207|dbj|BAF69711.1| ATP-binding protein Mrp [Nitratiruptor sp. SB155-2]
          Length = 387

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 39/241 (16%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS------KPFNWDFSHRPH 112
              VAQ++ +E+  K           L    E+I  +  P        +  N     +  
Sbjct: 49  APEVAQQLRDEITKKLE---------LEGAKEVIVNIKQPKMPRETSSRGKNLAPQVKNF 99

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V++  G  GVGK+T    L+   +  G KV +   D +       + I   +        
Sbjct: 100 VMISSGKGGVGKSTTTVNLAIATAMQGKKVGILDADIYGPNVPRMMGILGVQPEVVGNKV 159

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +       +   +      +                  L+     +++ +++       S
Sbjct: 160 KPIETKYGVEVMSMGVLMEEG---------------QSLIWRGAMIMKAIEQFLRDILWS 204

Query: 233 VLQV----LDATTGQNALRQVEMFHAVAGTTGLI--MTKMDGTARGGGLIPIVVTHKIPV 286
            L V    +   TG   L   +     AG T     M  +D + R    + +     IP+
Sbjct: 205 DLDVLFIDMPPGTGDAQLTLAQSVPVTAGVTVTTPQMVSLDDSRR---SLDMFKKLHIPI 261

Query: 287 Y 287
            
Sbjct: 262 A 262


>gi|15644914|ref|NP_207084.1| cell division protein (ftsH) [Helicobacter pylori 26695]
 gi|2313382|gb|AAD07354.1| cell division protein (ftsH) [Helicobacter pylori 26695]
          Length = 550

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIERRENLSKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMSLESAHKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|308063148|gb|ADO05035.1| cell division protein (ftsH) [Helicobacter pylori Sat464]
          Length = 550

 Score = 41.8 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + V  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESVPIEKRENLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMNLESAHKNELENSFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|297795039|ref|XP_002865404.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297311239|gb|EFH41663.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 810

 Score = 41.8 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 15/85 (17%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           + EE+E+LL + D  V VAQKI+ +   K     V +  ++    E +   +    +   
Sbjct: 121 MLEEVEELLSKKDF-VEVAQKIIRKAEKKHIQTTVGLDTLVEMAWESV---MNDEIRTLG 176

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIG 129
                      + G+ GVGKTT++ 
Sbjct: 177 -----------LYGMGGVGKTTLLA 190


>gi|298709650|emb|CBJ31458.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 951

 Score = 41.8 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 39/208 (18%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPFNWD-- 106
            +LI++ +           L  K+ A+ V+ + V+   +    I +++  L  P  +D  
Sbjct: 405 RVLIQACVN----------LRAKKKAEKVAFKDVVGCDEAKGEIKQIVDFLVDPSAYDSL 454

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + RP  IL+VG  G GKT  I K              A       A +  L       +
Sbjct: 455 GASRPKGILLVGPPGTGKTL-IAK--------------ACAG---EAGVPFLYACGSEFN 496

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL-----MAGIGKMIRV 221
             +V   + +     A     +     +D   ID  GR    S             + ++
Sbjct: 497 GVYVGMGVAAVKRLFAKARKHKKSIIYIDE--IDHLGRARGGSRDAGSATQDREATLNQL 554

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQV 249
           L  +D       + V+ +T  ++ L   
Sbjct: 555 LSEMDGFEGKDGIVVMASTNRKDMLDDA 582


>gi|332638542|ref|ZP_08417405.1| putative Clp-like ATP-dependent protease, ATP-binding subunit
           [Weissella cibaria KACC 11862]
          Length = 705

 Score = 41.8 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 21/134 (15%)

Query: 24  TSLKLKEGITDIISSRRLD---DGVREELEDLLIRSDIGVAVAQ---KIVEELL---TKR 74
           T  KL+E I +   ++R+    + V E +E L      GV VAQ     +E L     + 
Sbjct: 361 TIDKLQEQIDNAGEAKRVTATVNDVAESVERL-----TGVPVAQMGASDIERLKGINERL 415

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K +     +  VS  I +      +      S      L VG  G GKT +  +L+  
Sbjct: 416 RGKVIGQDEAVEAVSRAIRRNRAGFDEGNRPIGS-----FLFVGPTGTGKTELAKQLA-- 468

Query: 135 MSDAGLKVMLAAGD 148
           +   G K  +   D
Sbjct: 469 LDMFGSKEHVIRLD 482


>gi|218192680|gb|EEC75107.1| hypothetical protein OsI_11282 [Oryza sativa Indica Group]
          Length = 381

 Score = 41.8 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 19/136 (13%)

Query: 89  SELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           SE +   +  LS  P   +F  +P +I+V+G+ G GKTT + +L      + ++  +   
Sbjct: 15  SEELADSIGSLSIGPERTNFKKKPVIIIVIGMAGTGKTTFMHRLVCHTQASNMRGYVLNL 74

Query: 148 ----------------DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
                           DT R   +  +K +    +   + S            +  + +A
Sbjct: 75  DPAVMTLPFGANIDIRDTVRYKEV--MKEYGLGPNGGILTSLNLFSTKFDEVISVIERRA 132

Query: 192 KKVDVLIIDTAGRLHN 207
            ++D +++DT G++  
Sbjct: 133 DQLDYVLVDTPGQIEI 148


>gi|297192017|ref|ZP_06909415.1| transport system kinase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719536|gb|EDY63444.1| transport system kinase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 318

 Score = 41.8 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 70/216 (32%), Gaps = 32/216 (14%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++V +    R      +  ++   S  + +++  L+       +   +V+ + G  GVGK
Sbjct: 6   QLVAQAREGRPRAVARLISLVEGASPQLREVMAALA-----PLTGGAYVVGLTGSPGVGK 60

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIGSD 177
           +T    L      AG +V + A D        A+      +   A               
Sbjct: 61  STSTSALVSAYRKAGKRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMATRGH 120

Query: 178 AAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
              LA+   +A +   A   DV++++T G   +                 +   A  SV+
Sbjct: 121 LGGLAWAAPQAIRVLDAAGCDVVLVETVGVGQSEVE--------------IASQADTSVV 166

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
            +       + ++  +      G    ++ K D   
Sbjct: 167 LLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 199


>gi|195119916|ref|XP_002004475.1| GI19594 [Drosophila mojavensis]
 gi|193909543|gb|EDW08410.1| GI19594 [Drosophila mojavensis]
          Length = 2624

 Score = 41.8 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 31/204 (15%)

Query: 61   AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            AV++KI+E +   +   D+   R +  ++ L  K L    +P           +L+VG  
Sbjct: 1377 AVSRKILEAIKNFKQRGDIVWTRNMTRMAVLTAKAL-QFDEP-----------VLLVGPT 1424

Query: 121  GVGKTTVIGKLS----KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
            G GKTTV   L+    K++      +     D         L       S D    ++  
Sbjct: 1425 GCGKTTVCQLLASIAQKRLRILNCHMHTEGADF--------LGGLRPCRSQDNSSQKLFE 1476

Query: 177  DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
             A      A ++      D +   +         L   +     VL           L  
Sbjct: 1477 WADGPLIYAMQEGSYFMADEI---SLAEDSVLERLNCILEPERSVLLAEKGGVVEEQLVT 1533

Query: 237  ----LDATTGQNALRQVEMFHAVA 256
                 +  T ++ + Q +      
Sbjct: 1534 PNDDGECKTNEDFVVQAKAGFQFL 1557


>gi|210134484|ref|YP_002300923.1| cell division protein FtsH [Helicobacter pylori P12]
 gi|210132452|gb|ACJ07443.1| cell division protein FtsH [Helicobacter pylori P12]
          Length = 550

 Score = 41.8 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 71/227 (31%), Gaps = 38/227 (16%)

Query: 33  TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI 92
             + +   L+   + ELE+   R D+                          + +V E +
Sbjct: 131 KRLDTKMSLESATKNELENAFQRYDV----------------LGVRFEDIAGVDEVKEEL 174

Query: 93  HKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +++  L  P  +       P  +L++G  GVGKT     ++K ++            + 
Sbjct: 175 LEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTM----IAKALASEARVPFFYESGS- 229

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
              A  Q+ + A       +       A ++ +          +D   ID  G+      
Sbjct: 230 ---AFSQIYVGAGAKKVHELFMHAKRHAPSIIF----------IDE--IDALGKARGGHR 274

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
                  + ++L  +D    +  + V+ AT     + +  +      
Sbjct: 275 SDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFD 321


>gi|167006351|ref|YP_001661574.1| putative ATP/GTP-binding protein [Streptomyces sp. HK1]
 gi|166162433|gb|ABY83554.1| putative ATP/GTP-binding protein [Streptomyces sp. HK1]
          Length = 209

 Score = 41.8 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 16/96 (16%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             + +P  IL+ G+ G GKTT    L++ +  AGL  +    + FR              
Sbjct: 24  QAARKPVGILMAGMPGAGKTT----LARALEQAGLVRLCPDEEMFR---------RYGHY 70

Query: 166 SADFVCSEIGSDAAAL---AYEAFKQAQAKKVDVLI 198
             DF   E     A +   A +A ++  A   DV++
Sbjct: 71  GRDFPRGEFRVREAPVLRSAADALRRLLASGRDVVV 106


>gi|161617562|ref|YP_001591527.1| hypothetical protein SPAB_05421 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366926|gb|ABX70694.1| hypothetical protein SPAB_05421 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 583

 Score = 41.8 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ +++D G  V L   D    AA     +     +       
Sbjct: 330 IMLMGKGGVGKTTLAAAIAVRLADMGFDVHLTTSD---PAAHLSTTLNGSLKNLQVSRIN 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    K  D+   D AGR      L +   + I V + 
Sbjct: 387 PHDETERYRQHVLE---TKGRDL---DEAGRRLLEEDLRSPCTEEIAVFQA 431


>gi|116662278|ref|YP_829332.1| cobyrinic acid a,c-diamide synthase [Arthrobacter sp. FB24]
 gi|116613042|gb|ABK05751.1| plasmid segregation oscillating ATPase ParF [Arthrobacter sp. FB24]
          Length = 210

 Score = 41.8 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 114 ILVVGV--NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I+VVG    GVGK+TV+  L+ +++  G ++ +  GD  RS A   +             
Sbjct: 2   IIVVGSEKGGVGKSTVVTNLAVELAKRGKRIAVVDGDRQRSTARWAVDREEAGHEPRIFV 61

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            E          E          DV+++D AG+    
Sbjct: 62  VEKLGSLHETLRE-----LDTSYDVVLVDVAGKDSKE 93


>gi|110680948|ref|YP_683955.1| urease accessory protein UreG [Roseobacter denitrificans OCh 114]
 gi|109457064|gb|ABG33269.1| urease accessory protein UreG [Roseobacter denitrificans OCh 114]
          Length = 222

 Score = 41.8 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 78/237 (32%), Gaps = 51/237 (21%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF-------- 150
           ++ P   +   R   I + G  G GKTT+   L+K +S     V +   D +        
Sbjct: 3   VAPPLTLNGPLR---IGIGGPVGAGKTTLTAALAKALSPR-HSVGVITNDIYTQEDAEAL 58

Query: 151 -RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            R   + Q ++    T      +     +  LA  A  Q +   ++ ++I++ G      
Sbjct: 59  MRLQILPQDRVIGVETGGCPHTAIREDASINLAAVAEMQTRHPDIEAILIESGG-----D 113

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L A             P      L V+D   G+   R  +   A+  +  LI+ K D  
Sbjct: 114 NLSATFS----------PELADVTLYVIDVAAGEEIPR--KGGPAITRSDVLIINKTDLA 161

Query: 270 ARGGGLIPIVVT------HKIPVYFL------GVGEGINDLEPFVAKDFSAVITGCL 314
              G  + ++           P  F       GV E ++ L           I+G  
Sbjct: 162 PHVGASLEVMEQDATRMRAGRPFVFAALRHGQGVSEVLDHLR---------AISGLG 209


>gi|94967273|ref|YP_589321.1| gluconate kinase [Candidatus Koribacter versatilis Ellin345]
 gi|94549323|gb|ABF39247.1| gluconate kinase, SKI family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 161

 Score = 41.8 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 12/87 (13%)

Query: 113 VILVVGVNGVGKTTVIGK-LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +IL++GV G GKTT +GK L+ ++            D F  AA       A   +   + 
Sbjct: 2   IILLMGVQGSGKTT-VGKALAARLGWDFRD-----ADEFHPAANK-----AKMAAGIPLT 50

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLI 198
            E           A  +A A+  ++++
Sbjct: 51  DEDREPWLQAIRAAMDRANAEHRNLVV 77


>gi|32455679|ref|NP_862161.1| putative ATP/GTP-binding protein [Streptomyces violaceoruber]
 gi|28797305|gb|AAO50152.1| putative ATP/GTP-binding protein [Streptomyces violaceoruber]
          Length = 236

 Score = 41.8 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P  IL+ G+ G GKTT    L++ + +AG + +    + FR     +   +         
Sbjct: 56  PRAILMSGLQGSGKTT----LARALEEAGFRRLCPDEEMFR-----RYGHYGRDFPRGQF 106

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLI 198
                     +A E  +Q  A   +V++
Sbjct: 107 RVREAPVLKDIALE-LQQLLAAGHEVVV 133


>gi|153870483|ref|ZP_01999876.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152073049|gb|EDN70122.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 279

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 40/141 (28%), Gaps = 8/141 (5%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM----PLSKPFNWDFSHRPHVILVVG 118
            Q+ V     KR             + E + K L      L K        RP  + + G
Sbjct: 112 VQEFVATERAKRSKGKSKEMLSKELMFEELKKHLSMDELNLVKQKFTQERQRPPKVAIFG 171

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT +       +          G T ++   +             +    GS  
Sbjct: 172 KTGVGKTTTVN---SLFNAQWKTSHTVVG-TTKAQMKEFTLETGGTLEIVDLPGYGGSLK 227

Query: 179 AALAYEAFKQAQAKKVDVLII 199
                E   Q      D++++
Sbjct: 228 EDRENEQIYQQFIPSCDLVLL 248


>gi|289626902|ref|ZP_06459856.1| putative plasmid stability/partitioning protein [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330870289|gb|EGH04998.1| putative plasmid stability/partitioning protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330880231|gb|EGH14380.1| putative plasmid stability/partitioning protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 217

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD-RTSADFVCSEIGSDAA 179
           GVGKTT+I  L+  +      V +   D  R      L++WA+ R+  D     + +   
Sbjct: 11  GVGKTTLIANLAVMLQKKTASVAIVRADKNR-----DLEVWAEFRSEKDVPDIPVMTCYG 65

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            ++ +  K       DV+ +DTAG     
Sbjct: 66  DISKDIRK--LETVTDVVFVDTAGHDSME 92


>gi|45358267|ref|NP_987824.1| ParA type ATPase [Methanococcus maripaludis S2]
 gi|44921024|emb|CAF30260.1| ParA type ATPase [Methanococcus maripaludis S2]
          Length = 289

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF- 150
            KM+   +     + S   + I ++ G  GVGK+TV   L+  ++  G KV +  GD   
Sbjct: 22  KKMMEQQNAQIRDNMSKIKYKIAVMSGKGGVGKSTVTVNLAATLNMMGYKVGVLDGDIHG 81

Query: 151 ----RSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
               +   +DQ++  AD      V +  G    ++
Sbjct: 82  PNIPQMLGVDQIQPMADENGIYPVSTPQGIKTMSI 116


>gi|139438165|ref|ZP_01771718.1| Hypothetical protein COLAER_00706 [Collinsella aerofaciens ATCC
           25986]
 gi|133776362|gb|EBA40182.1| Hypothetical protein COLAER_00706 [Collinsella aerofaciens ATCC
           25986]
          Length = 251

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 16/172 (9%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+   +  GL+ +L   D  ++ A D   ++    S      E+    A 
Sbjct: 12  GVGKTTTAVNLAAIFAAQGLRTLLVDLDP-QAPATDFFGLYDRAASERRTSVELLYGGAP 70

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA- 239
           +  E    A  + +DV+   T   +  N +L+        +    D    + V  +  + 
Sbjct: 71  V--EEVAYAAGENLDVVAS-TIDLVDQNEMLLREQRLKFALD---DASGSYDVCLIDCSP 124

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI------PIVVTHKIP 285
              + A           G   +I  K+D T   G  +       I    ++P
Sbjct: 125 VMRRLAFNAYLAAAE--GGMVVIPVKLDSTVMRGTALTVEATRSIADALRMP 174


>gi|91976399|ref|YP_569058.1| arginine/ornithine transport system ATPase [Rhodopseudomonas
           palustris BisB5]
 gi|91682855|gb|ABE39157.1| LAO/AO transport system ATPase [Rhodopseudomonas palustris BisB5]
          Length = 330

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 19/145 (13%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
              L+ ++L    +      +  P         GVGK+T I  L   + + G KV + A 
Sbjct: 44  ARALVQELLPATGRAIRVGITGSP---------GVGKSTTIDALGMYLIEQGHKVAVLAV 94

Query: 148 D--TFRSAA-IDQLKIWADRTSADFVC-------SEIGSDAAALAYEAFKQAQAKKVDVL 197
           D  + R+   I   K    R SA+          S      AA   EA    +A   DV+
Sbjct: 95  DPSSARTGGSILGDKTRMARLSAEPHAFIRPSPSSGTLGGVAAKTREAMLLCEAAGFDVV 154

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVL 222
           +++T G   + + +       + ++
Sbjct: 155 LVETVGIGQSETAVCDMTDFFLALM 179


>gi|317055630|ref|YP_004104097.1| phosphoribulokinase/uridine kinase [Ruminococcus albus 7]
 gi|315447899|gb|ADU21463.1| phosphoribulokinase/uridine kinase [Ruminococcus albus 7]
          Length = 314

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K   K       + + +E   K L   ++    +   RP +IL+ G +G  KTT   K+ 
Sbjct: 8   KLNGKVAEQGAYIGECNEKYEKKLRRAAEKIADEHRERP-IILLAGPSGSCKTTTALKID 66

Query: 133 KKMSDAGLKVMLAAGDTF 150
             +   G+     + D +
Sbjct: 67  NMLDTMGIHTHTISMDDY 84


>gi|240170800|ref|ZP_04749459.1| hypothetical protein MkanA1_15912 [Mycobacterium kansasii ATCC
           12478]
          Length = 294

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 71/231 (30%), Gaps = 31/231 (13%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           + +L+ +           L  + E   +    +    +        V+ + G  G GK+T
Sbjct: 3   IADLIARARNGSPRATGRLLSLVE--GERRDEVLAAIDPAPVSEIRVVGITGPPGAGKST 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIGSDAA 179
            I  L     + G +V + A D        A+      +    D +              
Sbjct: 61  TIAALVGAYRERGRRVGVLAVDPSSPFSGGALLGDRIRMTAHIDDSDVLIRSVASRGHLG 120

Query: 180 ALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
            LA     A +  QA   D ++++T G   +           I +    DP        V
Sbjct: 121 GLAAAVPAAIRLLQAICYDEVLLETVGVGQSE----------IEIAAIADPT------VV 164

Query: 237 LDATTGQNALRQVEMF-HAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
           +      +A++  +     VA    +++ K D       +  +     +P+
Sbjct: 165 ILNPGTGDAVQAAKAGLLEVADI--VVVNKADRDGAEQTVRDLRAETDVPI 213


>gi|116254241|ref|YP_770079.1| arsenical translocating ATPase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258889|emb|CAK09998.1| putative arsenical translocating ATPase [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 588

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 62/183 (33%), Gaps = 22/183 (12%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  L+K  +     R  +++V+G  GVGKTTV   L+  + + G  V L   D    AA 
Sbjct: 313 LPSLAKLIDEIAGGRKGLVMVMGKGGVGKTTVAAALAIGLVERGHAVHLTTTD---PAAH 369

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---M 212
               +            +    AA       K   ++  D+   D  G+      L    
Sbjct: 370 LSFIVEGSMPGLTV---DRIDPAAETKRYIEKVMSSRGRDL---DEEGKALLREDLESPC 423

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL---------RQVEMFHAVAGTTGLIM 263
                +     R+   A  + + +  A TG   L         RQ+       G  G I+
Sbjct: 424 TEEVAVFHAFSRIVAEARDAFVVIDTAPTGHTLLLLDATGAYHRQMTRQMETVGP-GRIV 482

Query: 264 TKM 266
           T +
Sbjct: 483 TPL 485


>gi|302554203|ref|ZP_07306545.1| LAO/AO transport system ATPase [Streptomyces viridochromogenes DSM
           40736]
 gi|302471821|gb|EFL34914.1| LAO/AO transport system ATPase [Streptomyces viridochromogenes DSM
           40736]
          Length = 319

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 32/218 (14%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              +V +    R      +  ++   S  + +++  L+       +   +V+ + G  GV
Sbjct: 5   VSTLVAQAREGRPRAVARLISLVEGASPQLREVMAALA-----PLTGGAYVVGLTGSPGV 59

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIG 175
           GK+T    L       G +V + A D        A+      +   A             
Sbjct: 60  GKSTSTSALVTAYRKQGKRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMATR 119

Query: 176 SDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                LA+   +A +   A   DV++++T G   +                 +   A  S
Sbjct: 120 GHLGGLAWAAPQAIRVLDAAGCDVILVETVGVGQSEVE--------------IASQADTS 165

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           V+ +       + ++  +      G    ++ K D   
Sbjct: 166 VVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 200


>gi|145527814|ref|XP_001449707.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417295|emb|CAK82310.1| unnamed protein product [Paramecium tetraurelia]
          Length = 563

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 25/210 (11%)

Query: 57  DIGVAVAQKIV---EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           DI + ++  I+   +E+      KDV       +  + +   L   SK ++   +  P  
Sbjct: 125 DIDIEISLNIIPEEKEVKKTTGFKDVIGIDDYKEELQEVVDFLRNPSK-YHESGAKLPKG 183

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           IL+VG  G GKT     L++ +++      L        A  D++ +    +    +  E
Sbjct: 184 ILLVGRPGTGKT----LLARALAEEAGCTFLYKSG----AEFDEMFVGVGSSRVRQLFQE 235

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                        KQ     +D   ID+ G            G + ++L  +D    +  
Sbjct: 236 ARQ----------KQPCIIFIDE--IDSIG-GSRGGDDPKRYGTINQILTEMDGFRQNEA 282

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           + V+ AT  + +L            T  IM
Sbjct: 283 IIVIGATNMEQSLDAALTRAGRFDKTIHIM 312


>gi|74318747|ref|YP_316487.1| partition-like protein [Thiobacillus denitrificans ATCC 25259]
 gi|74058242|gb|AAZ98682.1| probable partition-related protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 201

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 64/177 (36%), Gaps = 23/177 (12%)

Query: 113 VILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           VI+V     G GKTT+   L+  ++  G +V L   D  + +A   L   +         
Sbjct: 3   VIVVANPKGGSGKTTLSINLAGYLAAQGERVALLDMDRQK-SATHWLAARSAAL------ 55

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                    +A    ++ Q    D L++DT   LH  + L   +    +V   + P    
Sbjct: 56  -------PEIAL--LREGQKGGSDWLVVDTPAALHGRT-LERALKLAHKVAVPIAPSLFD 105

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI-PIVVTHKIPVY 287
            +    D     NA +      A AG  G+   ++D   R G  +   +    +PV 
Sbjct: 106 -IRASQDFLAALNAEKTARRGSAYAGVVGM---RLDPRTRAGVTLEQFMAQQGLPVL 158


>gi|259503700|ref|ZP_05746602.1| multidrug resistance ABC superfamily ATP binding cassette
           transporter, membrane protein [Lactobacillus antri DSM
           16041]
 gi|259168332|gb|EEW52827.1| multidrug resistance ABC superfamily ATP binding cassette
           transporter, membrane protein [Lactobacillus antri DSM
           16041]
          Length = 611

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            PL + FN   +   H++ +VG  G GKTT+I  L +     G  + L   DT RS   D
Sbjct: 383 EPLIEDFNL-RAQPNHMVAIVGPTGAGKTTIINLLERFYEVQGGHIYLDGQDT-RSMTRD 440

Query: 157 QLKIWADRT 165
            L+      
Sbjct: 441 DLRKHIGMV 449


>gi|115452649|ref|NP_001049925.1| Os03g0312600 [Oryza sativa Japonica Group]
 gi|108707797|gb|ABF95592.1| XPA-binding protein 1, putative, expressed [Oryza sativa Japonica
           Group]
 gi|108707798|gb|ABF95593.1| XPA-binding protein 1, putative, expressed [Oryza sativa Japonica
           Group]
 gi|108707799|gb|ABF95594.1| XPA-binding protein 1, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548396|dbj|BAF11839.1| Os03g0312600 [Oryza sativa Japonica Group]
 gi|215706974|dbj|BAG93434.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 396

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 19/136 (13%)

Query: 89  SELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           SE +   +  LS  P   +F  +P +I+V+G+ G GKTT + +L      + ++  +   
Sbjct: 30  SEELADSIGSLSIGPERTNFKKKPVIIIVIGMAGTGKTTFMHRLVCHTQASNMRGYVLNL 89

Query: 148 ----------------DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
                           DT R   +  +K +    +   + S            +  + +A
Sbjct: 90  DPAVMTLPFGANIDIRDTVRYKEV--MKEYGLGPNGGILTSLNLFSTKFDEVISVIERRA 147

Query: 192 KKVDVLIIDTAGRLHN 207
            ++D +++DT G++  
Sbjct: 148 DQLDYVLVDTPGQIEI 163


>gi|304405218|ref|ZP_07386878.1| capsular exopolysaccharide family [Paenibacillus curdlanolyticus
           YK9]
 gi|304346097|gb|EFM11931.1| capsular exopolysaccharide family [Paenibacillus curdlanolyticus
           YK9]
          Length = 229

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 58/191 (30%), Gaps = 41/191 (21%)

Query: 106 DFSHRPHVILVVGVN-GVGKTTVIGKLSKKMSDAGLKVMLAAGDT--------------- 149
                  VI++     G GKTT +  L+   +  G +V+L   D                
Sbjct: 35  SVDEPIKVIMIASAQAGEGKTTTVTNLAITYAMEGKRVLLIDADLRKPSLHRMFDLSNRI 94

Query: 150 ---------FRSAAIDQLKIWADRTSAD--FVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
                    F  + ++Q  +  + T      V         +   +        + D+++
Sbjct: 95  GLTNLLAGQFHLSEVEQATLVDNLTVIPSGPVPPNPSELLGSQKMKQLLAELKNQYDMIL 154

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG- 257
           IDT         L    G +I        +    VL V      ++ +R+ +        
Sbjct: 155 IDTP------PNLAVPDGMIISA------NCDGVVLVVQAGKVKRDMVRKAKTNLDHVNA 202

Query: 258 -TTGLIMTKMD 267
              G+++  ++
Sbjct: 203 RILGVVLNNVE 213


>gi|254426115|ref|ZP_05039832.1| hypothetical protein S7335_683 [Synechococcus sp. PCC 7335]
 gi|196188538|gb|EDX83503.1| hypothetical protein S7335_683 [Synechococcus sp. PCC 7335]
          Length = 1236

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 33/137 (24%)

Query: 31  GITDIISSRRLDDGVREELEDLL-IR----SDIGV-----AVAQKIVEELLTK------- 73
            +   +S + +D     EL + L +     +D+G+      +++K+  ++          
Sbjct: 40  TVKKFLSGKPVDFATFTELCETLNLEWEEIADLGLDLPEDKLSKKVSSQVEEDCYSLAQD 99

Query: 74  -------RYAKDVSVQ----RVLYDVSELIHKML-----MPLSKPFNWDFSHRPHVILVV 117
                  R A+ +S Q    +   D  + I   +       L    +W    R  ++ + 
Sbjct: 100 PSGTIKARQAQHLSGQNSTPKCAQDWGKAIDTAIFFGREQALDTLEDWLVRDRARLVALC 159

Query: 118 GVNGVGKTTVIGKLSKK 134
           G+ G+GKTT+  KL+++
Sbjct: 160 GMGGIGKTTLSAKLARQ 176


>gi|159904573|ref|YP_001548235.1| cobyrinic acid ac-diamide synthase [Methanococcus maripaludis C6]
 gi|159886066|gb|ABX01003.1| Cobyrinic acid ac-diamide synthase [Methanococcus maripaludis C6]
          Length = 289

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF- 150
            KM+   +     + S   + I ++ G  GVGK+TV   L+  ++  G KV +  GD   
Sbjct: 22  KKMMEQQNAQIRDNMSKIKYKIAVMSGKGGVGKSTVTVNLAATLNMMGYKVGVLDGDIHG 81

Query: 151 ----RSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
               +   +DQ++  AD      + +  G    ++
Sbjct: 82  PNIPQMLGVDQIQPMADENGIYPIATPQGIKTMSI 116


>gi|268567464|ref|XP_002640000.1| Hypothetical protein CBG10830 [Caenorhabditis briggsae]
          Length = 457

 Score = 41.8 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 11/141 (7%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+VI +VG+   GKT +  KL + ++  G+K        +R  A + L+   +       
Sbjct: 37  PNVIALVGLPARGKTYISHKLCRYLNWIGIKTKAFNVGEYRRKACN-LEEEGENEFFSPN 95

Query: 171 CSEIGSDAAALAYEAF----KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            +        +A  A     K    K+ +V I+D      +   L+          K L 
Sbjct: 96  NARGQKIRDEVAQLAINDMGKYLDNKEGEVAILDATNTTRDRRKLLMEF------CKNLM 149

Query: 227 PHAPHSVLQVLDATTGQNALR 247
              P  V  V       + + 
Sbjct: 150 HDPPFRVFFVESVCDDPDIIN 170


>gi|309361219|emb|CAP30131.2| hypothetical protein CBG_10830 [Caenorhabditis briggsae AF16]
          Length = 461

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 11/141 (7%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+VI +VG+   GKT +  KL + ++  G+K        +R  A + L+   +       
Sbjct: 37  PNVIALVGLPARGKTYISHKLCRYLNWIGIKTKAFNVGEYRRKACN-LEEEGENEFFSPN 95

Query: 171 CSEIGSDAAALAYEAF----KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            +        +A  A     K    K+ +V I+D      +   L+          K L 
Sbjct: 96  NARGQKIRDEVAQLAINDMGKYLDNKEGEVAILDATNTTRDRRKLLMEF------CKNLM 149

Query: 227 PHAPHSVLQVLDATTGQNALR 247
              P  V  V       + + 
Sbjct: 150 HDPPFRVFFVESVCDDPDIIN 170


>gi|307266272|ref|ZP_07547813.1| LAO/AO transport system ATPase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326391156|ref|ZP_08212701.1| LAO/AO transport system ATPase [Thermoanaerobacter ethanolicus JW
           200]
 gi|306918722|gb|EFN48955.1| LAO/AO transport system ATPase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325992789|gb|EGD51236.1| LAO/AO transport system ATPase [Thermoanaerobacter ethanolicus JW
           200]
          Length = 311

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 81/234 (34%), Gaps = 45/234 (19%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E LE+LLI+ D               +  A+ ++      D ++ I K L        ++
Sbjct: 2   ENLEELLIKGD--------------KRAIARTITYAENYEDKAKEIIKKL--------YE 39

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS-------AAIDQLK 159
            S   ++I + G  GVGK+T+  KL K + D G K+ + A D               +++
Sbjct: 40  RSGNAYIIGITGPPGVGKSTLTDKLIKNLVDVGKKIGVIAVDPTSPFTGGSLLGDRIRMQ 99

Query: 160 IWADRTSADFVCSEIGSDAAAL---AYEAFKQAQAKKVDVLIIDTAGRLHNNSI------ 210
             +   +              L    Y A +      +D + I+T G   +         
Sbjct: 100 DLSQHPNVYIRSMGTRGHLGGLSKGTYMAARILDIAGMDYIFIETVGVGQSEIDIVKIAD 159

Query: 211 -----LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
                L  G+G  ++ +K          + V++    + A + V   + +    
Sbjct: 160 TVVMVLAPGLGDDVQAIKAGIMEIGD--IFVVNKCDKEGADKTVVELNMMLDLD 211


>gi|86750652|ref|YP_487148.1| arginine/ornithine transport system ATPase [Rhodopseudomonas
           palustris HaA2]
 gi|86573680|gb|ABD08237.1| LAO/AO transport system ATPase [Rhodopseudomonas palustris HaA2]
          Length = 330

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 19/145 (13%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
              L+ ++L    +      +  P         GVGK+T I +L   +   G KV + A 
Sbjct: 44  ARALVQELLPQTGRAIRVGITGSP---------GVGKSTTIDELGMYLIAQGNKVAVLAV 94

Query: 148 D--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           D  + R+          + +L    D        S      AA   EA    +A   DV+
Sbjct: 95  DPSSARTGGSILGDKTRMARLSAEPDAFIRPSPSSGTLGGVAAKTREAMLLCEAAGFDVV 154

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVL 222
           +++T G   + + +       + ++
Sbjct: 155 LVETVGIGQSETAVCDMTDFFLALM 179


>gi|170065441|ref|XP_001867940.1| cytochrome P450 6B3 [Culex quinquefasciatus]
 gi|167882518|gb|EDS45901.1| cytochrome P450 6B3 [Culex quinquefasciatus]
          Length = 510

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD--I 58
           ++ + +A ++LS+    T+GF ++S  L   I  + ++  + D + +E+E  L   D  +
Sbjct: 293 LNEELIAGQALSFF---TEGFETSSAALGFLIYSLAANPHVQDKLYDEIEQALKSYDNTV 349

Query: 59  GVAVAQKI 66
             A+ QK+
Sbjct: 350 SYAMVQKL 357


>gi|83956375|ref|ZP_00964800.1| parA protein, putative [Sulfitobacter sp. NAS-14.1]
 gi|83839423|gb|EAP78606.1| parA protein, putative [Sulfitobacter sp. NAS-14.1]
          Length = 221

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT++  ++  M + G KV++   D  R      L+ WA +           +D   
Sbjct: 14  GAGKTTLLTAIASLMVEDGAKVVVIDTDPQR-----HLEAWAKKDQTSLDWLYEENDEKL 68

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           +      +      DV+ IDTAG     ++       +I +  + + 
Sbjct: 69  IPTVKALKNNEPAYDVIFIDTAGFKSAMAMHAIAAANLILIPSKANE 115


>gi|311895777|dbj|BAJ28185.1| putative multidrug ABC transporter ATP-binding protein
           [Kitasatospora setae KM-6054]
          Length = 676

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            R  VI +VG NG GKTT+   L+      G  V     DT
Sbjct: 441 RRGEVIALVGENGSGKTTLSKLLAGLYLPTGGAVRWDGADT 481


>gi|291437182|ref|ZP_06576572.1| transport system kinase [Streptomyces ghanaensis ATCC 14672]
 gi|291340077|gb|EFE67033.1| transport system kinase [Streptomyces ghanaensis ATCC 14672]
          Length = 313

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 67/218 (30%), Gaps = 32/218 (14%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              +V      R      +  ++   S  + +++  L+       +   +V+ + G  GV
Sbjct: 16  VSTLVARAREGRPRAVARLISLVEGASPQLREVMAALA-----PLTGNAYVVGLTGSPGV 70

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIG 175
           GK+T    L       G +V + A D        A+      +   A             
Sbjct: 71  GKSTSTSALVTAYRKQGKRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMASR 130

Query: 176 SDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                LA+   +A +   A   DV++++T G   +                 +   A  S
Sbjct: 131 GHLGGLAWAAPQAIRVLDAAGCDVILVETVGVGQSEVE--------------IASQADTS 176

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           V+ +       + ++  +      G    ++ K D   
Sbjct: 177 VVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 211


>gi|88603725|ref|YP_503903.1| hydrogenase accessory protein HypB [Methanospirillum hungatei JF-1]
 gi|88189187|gb|ABD42184.1| hydrogenase accessory protein HypB [Methanospirillum hungatei JF-1]
          Length = 215

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 24/165 (14%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV-CSEI 174
           ++G  G GKT +I K+  K+   GLK    AGD +     D  +I A    A+ V   + 
Sbjct: 37  LLGGIGSGKTALIEKVVPKLKSRGLKAAAIAGDVY--GDDDFQRIVALGIPAENVNTGKE 94

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHS 232
               A +   A        VDVL I+  G +    +  L A      R++          
Sbjct: 95  CHLDAHMIEHALDHLPLDDVDVLFIENVGNMVCPTDFELGAE----KRIV---------- 140

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
              V+ +T G + + +  M          ++ K+D     G  + 
Sbjct: 141 ---VVSSTEGDDVVNKHPMMFRGCTI--AVLNKIDLADAVGADLN 180


>gi|157828036|ref|YP_001494278.1| Mrp protein [Rickettsia rickettsii str. 'Sheila Smith']
 gi|157800517|gb|ABV75770.1| Mrp protein [Rickettsia rickettsii str. 'Sheila Smith']
          Length = 319

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 68  EELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           EE+  K   K  ++S    +  V   I  M   + KP ++  + +  +++  G  GVGK+
Sbjct: 53  EEIRLKAMNKLNEISEVNKITIVFTEIKPMEKKVQKPKHFVENVKKIILVASGKGGVGKS 112

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTF 150
           T+   +++++S A  +V +   D +
Sbjct: 113 TISALIAQQLSLANYRVGIVDADIY 137


>gi|189025892|ref|YP_001933664.1| uridine kinase [Treponema pallidum subsp. pallidum SS14]
 gi|189018467|gb|ACD71085.1| uridine kinase [Treponema pallidum subsp. pallidum SS14]
          Length = 555

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
                    V+ + G +G GKTT+  KLS ++   G    + + D +
Sbjct: 281 EIARRDSVRVVSIAGPSGSGKTTIAKKLSVQLQVLGYDPHVISLDDY 327


>gi|125854137|ref|XP_701250.2| PREDICTED: hypothetical protein LOC572443 [Danio rerio]
          Length = 644

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 26/185 (14%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSD 137
           +       D SEL  KM       F     ++PH  IL+VG  G GKT    KL    + 
Sbjct: 155 LQTTADRSDESELYRKM------NFGQRDKNKPHKTILLVGETGTGKT----KLIN--TM 202

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
               + +   D          K+W + T      +   S  + +A       Q    D+ 
Sbjct: 203 INYMLGVKRED----------KVWFEITDDQSNETSAHSQTSIIAVHGV-YLQESPTDLT 251

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDP--HAPHSVLQVLDATTGQNALRQVEMFHAV 255
           IIDT G    ++ L   I      L + +   HA  +V  V++A   + + RQ+ +F AV
Sbjct: 252 IIDTPGYGDTHAELDEQIAVSFFSLSKPEDGIHAVDAVCLVINANQNRLSDRQIYIFDAV 311

Query: 256 AGTTG 260
               G
Sbjct: 312 QSIFG 316


>gi|78777221|ref|YP_393536.1| peptidase M41 [Sulfurimonas denitrificans DSM 1251]
 gi|78497761|gb|ABB44301.1| Peptidase M41 [Sulfurimonas denitrificans DSM 1251]
          Length = 547

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 27/186 (14%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGK 124
           +E + +     D+     + DV   + +++  + KP  +    +  P  +L+VG  GVGK
Sbjct: 139 IESIKSDVTFDDIGG---ISDVKSELEEIIDFMKKPKRYKSFGARMPRGVLLVGPPGVGK 195

Query: 125 TTVIGK-LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
            T+I K ++                   +A +             +V           A 
Sbjct: 196 -TMIAKAVAN------------------AAGVPFYYQSGASFVQIYVGMGAKRVHELFAA 236

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                     +D   ID  G+  +          + ++L  +D     S + V+ AT   
Sbjct: 237 AKNSAPAIIFIDE--IDAVGKKRDGQRSDEREATLNQLLTEMDGFENSSGIIVIAATNKI 294

Query: 244 NALRQV 249
           + L   
Sbjct: 295 DVLDSA 300


>gi|15639654|ref|NP_219104.1| uridine kinase (udk) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|3322964|gb|AAC65638.1| uridine kinase (udk) [Treponema pallidum subsp. pallidum str.
           Nichols]
          Length = 555

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
                    V+ + G +G GKTT+  KLS ++   G    + + D +
Sbjct: 281 EIARRDSVRVVSIAGPSGSGKTTIAKKLSVQLQVLGYDPHVISLDDY 327


>gi|165932734|ref|YP_001649523.1| iron-sulfur cluster assembly/repair protein [Rickettsia rickettsii
           str. Iowa]
 gi|165907821|gb|ABY72117.1| iron-sulfur cluster assembly/repair protein [Rickettsia rickettsii
           str. Iowa]
          Length = 319

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 68  EELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           EE+  K   K  ++S    +  V   I  M   + KP ++  + +  +++  G  GVGK+
Sbjct: 53  EEIRLKAMNKLNEISEVNKITIVFTEIKPMEKKVQKPKHFVENVKKIILVASGKGGVGKS 112

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTF 150
           T+   +++++S A  +V +   D +
Sbjct: 113 TISALIAQQLSLANYRVGIVDADIY 137


>gi|317131777|ref|YP_004091091.1| type II secretion system protein E [Ethanoligenens harbinense
           YUAN-3]
 gi|315469756|gb|ADU26360.1| type II secretion system protein E [Ethanoligenens harbinense
           YUAN-3]
          Length = 560

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGK 130
            K   + +  Q  +  V++L    L   ++      +  P+ IL+V G  G GK+T +  
Sbjct: 277 EKVVIRILGGQDAVRSVNDL---GLSAENRALFEKITRSPNGILLVSGPTGSGKSTTLYS 333

Query: 131 LSKKMSDAGLKVMLAAGDT-FRSAAIDQLKIWADR--TSADFVCSEIGSDAAALAYEAFK 187
           +  +++  G+ ++       +R    +Q+++      T A  + S +  D   +     +
Sbjct: 334 ILNQLNQPGVNIITVEDPVEYRMPGANQVQVNPKAGLTFASGLRSILRQDPDIIMIGEIR 393

Query: 188 QAQAKKVDVLIIDT 201
            A+  ++ +    T
Sbjct: 394 DAETAQIAIRAAIT 407


>gi|282892010|ref|ZP_06300487.1| hypothetical protein pah_c205o025 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498052|gb|EFB40394.1| hypothetical protein pah_c205o025 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 561

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 29/118 (24%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV 67
           +E   +++KL + + +   K+            L++  + EL++ L ++D+      +I 
Sbjct: 168 NEKTLFLKKLKQFYPNVYDKI------------LEEKAQNELDEGLKKADVAYD---RIK 212

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +EL  +   ++ ++  +   +S                       V L VG  GVGKT
Sbjct: 213 KELKKRVAGQEHAISEMAALLS--------------LPKAKSTNQVYLYVGPTGVGKT 256


>gi|224072847|ref|XP_002303910.1| cc-nbs-lrr resistance protein [Populus trichocarpa]
 gi|222841342|gb|EEE78889.1| cc-nbs-lrr resistance protein [Populus trichocarpa]
          Length = 1042

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 80/269 (29%), Gaps = 97/269 (36%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
             +QK+  E L   +KL     S S  L +     I+   + +   +EL+D + ++D   
Sbjct: 31  FKSQKIDDEEL---KKLKARMRSVSKLLNDAQEKQITDAAVKE-WLDELKDAVYQAD--- 83

Query: 61  AVAQKIVEELLTKRYAKDVSVQ---------------------RVLYDVSELIHKMLMPL 99
                 ++E+  K     +  +                     + + +V   + K+L  L
Sbjct: 84  ----DFLDEIAYKALRLKLEGESRSQTCTDQLRSFLASLNPCRKGVREVQIELAKILRSL 139

Query: 100 SK--------PFNWDFSHRPH--------------------------------------- 112
            +                +P                                        
Sbjct: 140 EELVGQKDVLGLIERIGEKPSSRITPTSSLVDESGVYGRDAEKEAIMKLLLADDTKGRHL 199

Query: 113 -VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI +VG+ GVGKTT    L++ +     K ++ + D  + ++ D          A    
Sbjct: 200 DVISIVGMGGVGKTT----LAQLL----YKEIVVSNDRSQKSSFD--------LKAWVYV 243

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           SE       +  +  K   +   D +  D
Sbjct: 244 SEEFD-VLKVTKDILKGVGSMNCDNMTED 271


>gi|196166479|gb|ACG70798.1| arsenite acitvated ATPase [Escherichia coli]
          Length = 512

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ +++D G  V L   D    AA   + +     +      +
Sbjct: 316 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAAHLSMTLSGSLNNLQVSRID 372

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +         + +D AG+      L +   + I V + 
Sbjct: 373 PHEETERYRQHVLETKA------IELDEAGKRLLEEDLRSPCTEEIAVFQA 417


>gi|322379440|ref|ZP_08053810.1| ATP-dependent zinc metalloproteinase [Helicobacter suis HS1]
 gi|322380949|ref|ZP_08055015.1| cell division protein FtsH [Helicobacter suis HS5]
 gi|321146621|gb|EFX41455.1| cell division protein FtsH [Helicobacter suis HS5]
 gi|321148149|gb|EFX42679.1| ATP-dependent zinc metalloproteinase [Helicobacter suis HS1]
          Length = 553

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 61/166 (36%), Gaps = 22/166 (13%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
            +V E +++++  L  P  +       P  +L+VG  GVGKT     ++K ++       
Sbjct: 161 KEVKEELYEIVDYLKNPKKYQELKIKLPKGVLLVGPPGVGKTM----IAKALASEAKVPF 216

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
                +    A  Q+ +         + ++  + + ++ +          +D   ID  G
Sbjct: 217 FYHSGS----AFVQIYVGVGAKRVRELFAKAKAFSPSIVF----------IDE--IDAVG 260

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           +             + ++L  +D     + + V+ AT   + + + 
Sbjct: 261 KARGAQRNDEREATLNQLLTEMDGFEESAQVIVIGATNKIDVIDEA 306


>gi|315660208|ref|ZP_07913064.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus lugdunensis M23590]
 gi|315494774|gb|EFU83113.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus lugdunensis M23590]
          Length = 647

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           + +    +  ++ L+     P++K  N + +   H I V+G NGVGKTT+I  ++ K
Sbjct: 323 ERNTGNDVMHINNLLIGYSTPITKEINIEITKGDH-IAVIGPNGVGKTTLIKTIANK 378


>gi|315161703|gb|EFU05720.1| arsenite-activated ATPase [Enterococcus faecalis TX0645]
          Length = 580

 Score = 41.4 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           E + +++ P + P   D  +  H     VI  +G  GVGKTT+   ++  ++D G KV L
Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLII 199
           A  D    AA  Q  + ++         +   + A    E   +A+      DV  +
Sbjct: 359 ATTD---PAAHLQF-VISESDQIKVSHIDEDKELADYTEEVLSKARETMSPDDVAYV 411


>gi|289550330|ref|YP_003471234.1| Hypothetical ABC transporter ATP-binding protein vga
           [Staphylococcus lugdunensis HKU09-01]
 gi|289179862|gb|ADC87107.1| Hypothetical ABC transporter ATP-binding protein vga
           [Staphylococcus lugdunensis HKU09-01]
          Length = 647

 Score = 41.4 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           + +    +  ++ L+     P++K  N + +   H I V+G NGVGKTT+I  ++ K
Sbjct: 323 ERNTGNDVMHINNLLIGYSTPITKEINIEITKGDH-IAVIGPNGVGKTTLIKTIANK 378


>gi|270013394|gb|EFA09842.1| hypothetical protein TcasGA2_TC011990 [Tribolium castaneum]
          Length = 454

 Score = 41.4 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 12/116 (10%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           ++ + PHVI +VG+   GKT +  KLS+ ++  G+   +     +R  A    K      
Sbjct: 22  NYVNSPHVIAMVGLPARGKTYISKKLSRYLNWIGINTKVFNLGEYRRHATTAYKNH---- 77

Query: 166 SADFVC---SEIGSDAAALAYEAFKQAQ---AKKVDVLIIDTAGRLHNNSILMAGI 215
             DF      E  +     A EA +          +V + D          L+   
Sbjct: 78  --DFFRPDNQEAMALRQQCAREALQDVCKWLESGGEVAVFDATNSTIERRRLIQEY 131


>gi|255976358|ref|ZP_05426944.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis T2]
 gi|255969230|gb|EET99852.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis T2]
          Length = 580

 Score = 41.4 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           E + +++ P + P   D  +  H     VI  +G  GVGKTT+   ++  ++D G KV L
Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLII 199
           A  D    AA  Q  + ++         +   + A    E   +A+      DV  +
Sbjct: 359 ATTD---PAAHLQF-VISESDQIKVSHIDEDKELADYTEEVLSKARETMSPDDVAYV 411


>gi|313889467|ref|ZP_07823115.1| arsenite-transporting ATPase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|157419736|gb|ABV55425.1| arsenical pump-driving ATPase ArsA [Streptococcus dysgalactiae
           subsp. equisimilis]
 gi|313122299|gb|EFR45390.1| arsenite-transporting ATPase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 580

 Score = 41.4 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           E + +++ P + P   D  +  H     VI  +G  GVGKTT+   ++  ++D G KV L
Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSDKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLII 199
           A  D    AA  Q  + ++         +   + A    E   +A+      DV  +
Sbjct: 359 ATTD---PAAHLQF-VISESDQIKVSHIDEDKELADYTEEVLSKARETMSPDDVAYV 411


>gi|18450319|ref|NP_569190.1| hypothetical protein pli0037 [Listeria innocua Clip11262]
 gi|16415820|emb|CAC42035.1| pli0037 [Listeria innocua Clip11262]
 gi|332312689|gb|EGJ25784.1| Arsenical pump-driving ATPase [Listeria monocytogenes str. Scott A]
          Length = 580

 Score = 41.4 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           E + +++ P + P   D  +  H     VI  +G  GVGKTT+   ++  ++D G KV L
Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLII 199
           A  D    AA  Q  + ++         +   + A    E   +A+      DV  +
Sbjct: 359 ATTD---PAAHLQF-VISESDQIKVSHIDEDKELADYTEEVLSKARETMSPDDVAYV 411


>gi|257416619|ref|ZP_05593613.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis AR01/DG]
 gi|257158447|gb|EEU88407.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis ARO1/DG]
          Length = 580

 Score = 41.4 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           E + +++ P + P   D  +  H     VI  +G  GVGKTT+   ++  ++D G KV L
Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLII 199
           A  D    AA  Q  + ++         +   + A    E   +A+      DV  +
Sbjct: 359 ATTD---PAAHLQF-VISESDQIKVSHIDEDKELADYTEEVLSKARETMSPDDVAYV 411


>gi|257079614|ref|ZP_05573975.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis JH1]
 gi|294780894|ref|ZP_06746248.1| putative arsenite-transporting ATPase [Enterococcus faecalis PC1.1]
 gi|256987644|gb|EEU74946.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis JH1]
 gi|294452020|gb|EFG20468.1| putative arsenite-transporting ATPase [Enterococcus faecalis PC1.1]
          Length = 580

 Score = 41.4 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           E + +++ P + P   D  +  H     VI  +G  GVGKTT+   ++  ++D G KV L
Sbjct: 299 EFLTEIVTPRAFPRLKDIVNELHQSGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHL 358

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLII 199
           A  D    AA  Q  + ++         +   + A    E   +A+      DV  +
Sbjct: 359 ATTD---PAAHLQF-VISESDQIKVSHIDEDKELADYTEEVLSKARETMSPDDVAYV 411


>gi|195585855|ref|XP_002082694.1| GD25099 [Drosophila simulans]
 gi|194194703|gb|EDX08279.1| GD25099 [Drosophila simulans]
          Length = 603

 Score = 41.4 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 22/189 (11%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++
Sbjct: 215 EDVKGCDEAKQELKEVVEFLKSPEKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVA 269

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                        F +A  +  ++         V                +      +D 
Sbjct: 270 GEAKVP------FFHAAGPEFDEVL--------VGQGARRVRDLFKAAKARAPCVIFIDE 315

Query: 197 LIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
             ID+ G    NS+L       + ++L  +D    ++ + VL AT  ++ L Q  +    
Sbjct: 316 --IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGR 373

Query: 256 AGTTGLIMT 264
                ++ T
Sbjct: 374 FDVEVMVST 382


>gi|239928857|ref|ZP_04685810.1| transport system kinase [Streptomyces ghanaensis ATCC 14672]
          Length = 301

 Score = 41.4 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 67/218 (30%), Gaps = 32/218 (14%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              +V      R      +  ++   S  + +++  L+       +   +V+ + G  GV
Sbjct: 4   VSTLVARAREGRPRAVARLISLVEGASPQLREVMAALA-----PLTGNAYVVGLTGSPGV 58

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIG 175
           GK+T    L       G +V + A D        A+      +   A             
Sbjct: 59  GKSTSTSALVTAYRKQGKRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMASR 118

Query: 176 SDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                LA+   +A +   A   DV++++T G   +                 +   A  S
Sbjct: 119 GHLGGLAWAAPQAIRVLDAAGCDVILVETVGVGQSEVE--------------IASQADTS 164

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           V+ +       + ++  +      G    ++ K D   
Sbjct: 165 VVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 199


>gi|156976843|ref|YP_001447749.1| hypothetical protein VIBHAR_05619 [Vibrio harveyi ATCC BAA-1116]
 gi|156528437|gb|ABU73522.1| hypothetical protein VIBHAR_05619 [Vibrio harveyi ATCC BAA-1116]
          Length = 254

 Score = 41.4 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 22/145 (15%)

Query: 22  ASTSLKLKEGITDI-ISSRRLDDGVREEL-EDLLIRSDIGVAVAQ-KIVEELLTKRYAKD 78
            ST + L +G+ DI   S  +D    E++    L+R D+ ++V + +    +L       
Sbjct: 99  ESTRMVLFKGLKDIAFDSSLIDLAQHEDVFRTSLLR-DVSLSVIKGQF-ARVLDGSNPLT 156

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH--VILVVGVNGVGKTT--------VI 128
               + +  V E     +  +   F+ +   +P   +  ++G NGVGKTT        V 
Sbjct: 157 DFEFKFVRPVQE----KMSGIELKFSVNVGDKPTTNIHAIIGRNGVGKTTLLNGMIEAVT 212

Query: 129 GK---LSKKMSDAGLKVMLAAGDTF 150
            K   ++K     G +      D F
Sbjct: 213 SKGQSVAKFYDVEGWRNDPIDTDYF 237


>gi|94264110|ref|ZP_01287909.1| Cobyrinic acid a,c-diamide synthase [delta proteobacterium MLMS-1]
 gi|93455526|gb|EAT05716.1| Cobyrinic acid a,c-diamide synthase [delta proteobacterium MLMS-1]
          Length = 252

 Score = 41.4 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGD 148
           PHVI + G  GVGKTTV   L S  +      V+    D
Sbjct: 2   PHVIAMAGKGGVGKTTVAALLISYLLKQEKTPVLAVDAD 40


>gi|322829457|gb|EFZ32838.1| XPA-interacting protein, putative [Trypanosoma cruzi]
          Length = 334

 Score = 41.4 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            HRP V+LVVG+ G GKTT++ ++     +   +      D
Sbjct: 46  DHRPLVVLVVGMAGTGKTTLVHRMQHYAMEQNKRAYFMNLD 86


>gi|11499959|ref|NP_071205.1| nucleotide-binding protein [Archaeoglobus fulgidus DSM 4304]
 gi|2650714|gb|AAB91283.1| nucleotide-binding protein [Archaeoglobus fulgidus DSM 4304]
          Length = 254

 Score = 41.4 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
                  E I + L  +          +  + ++ G  GVGK+TV   L+   +  G KV
Sbjct: 1   MQKRVTDEEIKERLGKI----------KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKV 50

Query: 143 MLAAGDT 149
            +   D 
Sbjct: 51  GILDADF 57


>gi|295798253|emb|CAZ15893.1| probable plasmid partitioning protein [Xanthomonas albilineans]
          Length = 215

 Score = 41.4 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT+   L+ +   AG  V L   D  RSA     ++W     A+ +   +     A
Sbjct: 12  GAGKTTLALHLAVEYHRAGKSVALIDTDPQRSA-----EMWGGLRDANDIT--VAGVPGA 64

Query: 181 LAYEAFKQAQAKKVDVLIIDT 201
               A + A++   DV+++DT
Sbjct: 65  EIAAALRDAESDGYDVVLVDT 85


>gi|167771841|ref|ZP_02443894.1| hypothetical protein ANACOL_03214 [Anaerotruncus colihominis DSM
           17241]
 gi|167666481|gb|EDS10611.1| hypothetical protein ANACOL_03214 [Anaerotruncus colihominis DSM
           17241]
          Length = 306

 Score = 41.4 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           H++LV G +  GKTT   KL+ ++   G +V   + D F
Sbjct: 45  HLLLVTGPSASGKTTTAKKLALELHVRGKRVNRLSLDNF 83


>gi|292620199|ref|XP_687974.4| PREDICTED: si:ch211-1n9.7 [Danio rerio]
          Length = 1397

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPFNWDFSH---RPHV 113
               ++++ E ++  R  + +     +   D  +++  +L  L+KP              
Sbjct: 902 NTPTSERLRELIVEFRPPQFIDSLSSVLPRDAKDIVSNILKGLNKPQKQAMKKVLLSKDY 961

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            L+VG+ G GKTT I  L + +   G  V+L +
Sbjct: 962 TLIVGMPGTGKTTTICTLVRILHACGFSVLLTS 994


>gi|220678691|emb|CAX13876.1| novel protein similar to vertebrate DNA replication helicase 2
           homolog (yeast) (DNA2) [Danio rerio]
          Length = 1020

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVL--YDVSELIHKMLMPLSKPFNWDFSH---RPHV 113
               ++++ E ++  R  + +     +   D  +++  +L  L+KP              
Sbjct: 548 NTPTSERLRELIVEFRPPQFIDSLSSVLPRDAKDIVSNILKGLNKPQKQAMKKVLLSKDY 607

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            L+VG+ G GKTT I  L + +   G  V+L +
Sbjct: 608 TLIVGMPGTGKTTTICTLVRILHACGFSVLLTS 640


>gi|315230915|ref|YP_004071351.1| carbon monoxide dehydrogenase accessory CooC-like protein
           [Thermococcus barophilus MP]
 gi|315183943|gb|ADT84128.1| carbon monoxide dehydrogenase accessory CooC-like protein
           [Thermococcus barophilus MP]
          Length = 268

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           ILV G  GVGKTT+   L+  ++D G  ++    D+ 
Sbjct: 3   ILVAGKGGVGKTTISALLAHILADKGYNILALDTDSV 39


>gi|71408458|ref|XP_806631.1| XPA-interacting protein [Trypanosoma cruzi strain CL Brener]
 gi|70870434|gb|EAN84780.1| XPA-interacting protein, putative [Trypanosoma cruzi]
          Length = 292

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            HRP V+LVVG+ G GKTT++ ++     +   +      D
Sbjct: 4   DHRPLVVLVVGMAGTGKTTLVHRMQHYAMEQNKRAYFMNLD 44


>gi|325119610|emb|CBZ55163.1| ATPase, AAA family protein, related [Neospora caninum Liverpool]
          Length = 605

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 65/183 (35%), Gaps = 19/183 (10%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIH-KMLMPLSKP-FNWDFSHRPHVILVVGVNGVGKTT 126
           EL   R   ++S    L+ V +L+  K++ P+ +P  +      P  IL+ G  G GKTT
Sbjct: 314 ELALPRTGLNISEIAGLHRVKKLLTDKIINPILRPELHVGLHQAPRGILLFGPPGTGKTT 373

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
               L+K M+ +          +     I +     +               + +  +  
Sbjct: 374 ----LAKWMAASSGASFFEVTPSS---IISKFHGETETLIKALFKVAEADSPSLVFIDEI 426

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
                K+          R   +   +    ++++++  +   +   VL V+ AT   + L
Sbjct: 427 DSLLGKR----------REKEDDTSIRMKNQLLQMMDGVSSCSGDKVLVVVGATNRPDML 476

Query: 247 RQV 249
            + 
Sbjct: 477 DEA 479


>gi|298345888|ref|YP_003718575.1| ABC transporter ATP-binding protein/membrane protein [Mobiluncus
           curtisii ATCC 43063]
 gi|298235949|gb|ADI67081.1| ABC superfamily ATP binding cassette transporter, ABC/membrane
           protein [Mobiluncus curtisii ATCC 43063]
          Length = 560

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 16/165 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA---------AGDTFR-SAAIDQLKIW 161
            V  ++G +G GKTT + KL+ +  D     +L            D +R    + Q    
Sbjct: 344 TVTALMGPSGAGKTT-LAKLAARFLDPDTGTVLIGGVNLKDLSRTDLYRHLGFVLQDAQL 402

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKM 218
              +  D +              A +QAQ    D ++    G       +  L  G  + 
Sbjct: 403 LRASIRDNISIGRHDADETEIINAARQAQI--HDEIMALPKGYDTVVGEDLKLSGGQAQR 460

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           I + + L   AP  +L    A        Q++           ++
Sbjct: 461 IAIARTLLLDAPILILDEAAAMVDPECEAQIQKAINHLMVGRTVL 505


>gi|295109197|emb|CBL23150.1| Putative GTPases (G3E family) [Ruminococcus obeum A2-162]
          Length = 310

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 14/136 (10%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-----QLKIWADRT 165
             V L+ G  G GKTT I K ++ + + G  + +   D     AI+       ++  +  
Sbjct: 2   VQVDLITGFLGSGKTTFIKKYARYLMEQGQNIGILENDF---GAINVDMMLLRELEGENC 58

Query: 166 SADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
             + V                         D ++I+ +G    +    A   + +    +
Sbjct: 59  ELEMVAGGCDKDCYRRRFRTKLIAMGMCGYDRVLIEPSGIFDVDDFFDALHEEPLDKWYQ 118

Query: 225 LDPHAPHSVLQVLDAT 240
           +      +V+ V+DA 
Sbjct: 119 IG-----NVITVVDAC 129


>gi|303325929|ref|ZP_07356372.1| adenylyl-sulfate kinase [Desulfovibrio sp. 3_1_syn3]
 gi|302863845|gb|EFL86776.1| adenylyl-sulfate kinase [Desulfovibrio sp. 3_1_syn3]
          Length = 198

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            VI ++G++G GKTT+   L   +   G +V    GD FR
Sbjct: 3   PVIWLLGLSGSGKTTLGSLLRLYLETRGHEVEFIDGDCFR 42


>gi|163734690|ref|ZP_02142129.1| urease accessory protein UreG [Roseobacter litoralis Och 149]
 gi|161392183|gb|EDQ16513.1| urease accessory protein UreG [Roseobacter litoralis Och 149]
          Length = 222

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 76/222 (34%), Gaps = 42/222 (18%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF-------- 150
           ++ P   +   R   I + G  G GKTT+   L+K +S     + +   D +        
Sbjct: 3   VASPLTLNGPLR---IGIGGPVGAGKTTLTAALAKALSPR-HSIGVITNDIYTQEDAEAL 58

Query: 151 -RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            R   + Q ++    T      +     +  LA  A  Q +  +++ ++I++ G      
Sbjct: 59  MRLQILPQDRVIGVETGGCPHTAIREDASINLAAVAEMQTRHPEIEAILIESGG-----D 113

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            L A             P      L V+D   G+   R  +   A+  +  LI+ K D  
Sbjct: 114 NLSATFS----------PELADVTLYVIDVAAGEEIPR--KGGPAITRSDVLIINKTDLA 161

Query: 270 ARGGGLIPI------VVTHKIPVYFL------GVGEGINDLE 299
              G  + +       +    P  F       GV E ++ L 
Sbjct: 162 PHVGASLEVMERDATRMRAGRPFVFTALRHGQGVSEVLDHLR 203


>gi|94267664|ref|ZP_01290950.1| Cobyrinic acid a,c-diamide synthase [delta proteobacterium MLMS-1]
 gi|93451902|gb|EAT02630.1| Cobyrinic acid a,c-diamide synthase [delta proteobacterium MLMS-1]
          Length = 252

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 111 PHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGD 148
           PHVI + G  GVGKTTV   L S  +      V+    D
Sbjct: 2   PHVIAMAGKGGVGKTTVAALLISYLLKQEKTPVLAVDAD 40


>gi|317131346|ref|YP_004090660.1| phosphoribulokinase / uridine kinase family protein [Ethanoligenens
           harbinense YUAN-3]
 gi|315469325|gb|ADU25929.1| phosphoribulokinase / uridine kinase family protein [Ethanoligenens
           harbinense YUAN-3]
          Length = 341

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L+     +    ++   + +      L  + +            IL+ G +  GKTT   
Sbjct: 9   LVEDVNRRAADAKQFFQECNARYEHDLAQVVEDIAQRAGRHRQFILLAGPSASGKTTTSL 68

Query: 130 KLSKKMSDAGLKVMLAAGDTF 150
           KL   +   G++ +  + D F
Sbjct: 69  KLKAGLMARGIRAVTVSLDDF 89


>gi|298736767|ref|YP_003729297.1| putative cell division protein [Helicobacter pylori B8]
 gi|298355961|emb|CBI66833.1| putative cell division protein [Helicobacter pylori B8]
          Length = 550

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 82/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIEKRENLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMSLESAHKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVRELFM 248

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                A ++ +          +D   ID  G+             + ++L  +D    + 
Sbjct: 249 HAKRHAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|297196536|ref|ZP_06913934.1| ABC transporter ATP-binding protein [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297153263|gb|EFH32247.1| ABC transporter ATP-binding protein [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|302607774|emb|CBW45686.1| putative ABC transporter ATP-binding protein [Streptomyces
           pristinaespiralis]
          Length = 337

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 23/43 (53%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            V  ++G NG GKTT +G LS  +   G +  +A  D  R AA
Sbjct: 34  TVHGLLGPNGAGKTTSVGILSTLLKADGGRAEVAGHDVSRQAA 76


>gi|182435930|ref|YP_001823649.1| putative transport system kinase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464446|dbj|BAG18966.1| putative transport system kinase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 318

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 70/215 (32%), Gaps = 32/215 (14%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +VE+    R      +  ++   S  + +++  L+       +   +V+ + G  GVGK+
Sbjct: 6   LVEQARAGRPRAVARLISLVEGASPQLREVMAALA-----PLAGHAYVVGLTGSPGVGKS 60

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKI----WADRTSADFVCSEIGSDA 178
           T    L      AG +V + A D        A+   +I                      
Sbjct: 61  TSTSALVSAYRRAGKRVGVLAVDPSSPFSGGALLGDRIRMADHVSDPGVYIRSMATRGHL 120

Query: 179 AALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
             LA+   +A +   A   DV++++T G   +                 +   A  SV+ 
Sbjct: 121 GGLAWSAPQAIRVLDAAGCDVVLVETVGVGQSEVE--------------IASQADTSVVL 166

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +       + ++  +      G    ++ K D   
Sbjct: 167 LAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 198


>gi|167378561|ref|XP_001734848.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165903456|gb|EDR28989.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 543

 Score = 41.4 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 20/99 (20%)

Query: 55  RSDIGV---AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
             D+G     +AQK++ EL+ +      S    +  +S+LI  +            S   
Sbjct: 233 EMDVGYINKQIAQKVINELMIE------SENYHVQQLSKLIEVI-----------KSRPT 275

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            ++L+ G +  GKTT   KL   +   G   ++ + D +
Sbjct: 276 QLVLIAGPSSSGKTTFAHKLGLGLQGVGYNPLVLSVDNY 314


>gi|251796889|ref|YP_003011620.1| hypothetical protein Pjdr2_2886 [Paenibacillus sp. JDR-2]
 gi|247544515|gb|ACT01534.1| conserved hypothetical protein [Paenibacillus sp. JDR-2]
          Length = 363

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 81/261 (31%), Gaps = 29/261 (11%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREE--LEDLLIRSDI 58
           + N+ +++ ++  I +L       S    +      ++ R+ D   E+  +E +    D 
Sbjct: 111 LDNRSISTNAIGMIEELK---GKLSEAYSKAYESFATALRIHDE-WEKFYIESM--EFDK 164

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
              V ++++EEL         ++ R L+  +           +      + R   I + G
Sbjct: 165 ADQVTEELIEELYAGHENGTTTIGRHLFFGAATPKGAF-DFIQSLTAQLNRR---IFIKG 220

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             G GK+T++ KL+      G+ V +                  D  S D +     S A
Sbjct: 221 RPGSGKSTLLKKLAAAAEKNGIDVQVYHCGF-------------DPNSLDMLIFPKLSTA 267

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGR---LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
              +    +    +  D ++ D   R      +      I  +          A   +  
Sbjct: 268 IFDSTAPHEYFPDRDGDEIL-DMYERTMIPGTDETYATEIASIKERYTAKMKEATSHLAA 326

Query: 236 VLDATTGQNALRQVEMFHAVA 256
                +   +        ++ 
Sbjct: 327 AEAIDSQIKSFYTAATNFSIV 347


>gi|261337882|ref|ZP_05965766.1| efflux ABC transporter, permease/ATP-binding protein
           [Bifidobacterium gallicum DSM 20093]
 gi|270277354|gb|EFA23208.1| efflux ABC transporter, permease/ATP-binding protein
           [Bifidobacterium gallicum DSM 20093]
          Length = 610

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 59/184 (32%), Gaps = 26/184 (14%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSAAIDQLKIWADRT--- 165
           H + +VG  G GKTT++  L +    +G  + +   DT    R    DQ  +    T   
Sbjct: 398 HKVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGIDTKSVPRWNVHDQFSMVLQDTWVF 457

Query: 166 ------SADFVCSEIGSDAAALAYEAFK-----QAQAKKVDVLIIDTAGRLHNNSILMAG 214
                 +  +    +  +    A +A       ++  +  D ++ D+         L+  
Sbjct: 458 QGTVRENIVYAKQGVRDEQVVAACKAVGLDHYIRSLPQGYDTVLDDSTTLSQGQKQLLTI 517

Query: 215 IGKMI---------RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
              M+              +D      + + +DA T       +    +      +I+  
Sbjct: 518 ARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFVIAHRLSTIRDADMILVM 577

Query: 266 MDGT 269
            DG 
Sbjct: 578 KDGD 581


>gi|18978221|ref|NP_579578.1| cell division inhibitor minD [Pyrococcus furiosus DSM 3638]
 gi|18894034|gb|AAL81973.1| cell division inhibitor minD homolog [Pyrococcus furiosus DSM 3638]
          Length = 253

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I+V G  G GKTT    LS   +  G +V+   GD +       L +     +  +   
Sbjct: 3   IIVVTGRGGAGKTTTTANLSTYFAQRGYRVLAVDGDLYLPN----LGLHFALDNVKYTIH 58

Query: 173 EIGSDAAALAYEAFKQAQAKKV 194
            +  D       A  + +   V
Sbjct: 59  SVVKDPNIDPEWAIYRHRETGV 80


>gi|294631439|ref|ZP_06709999.1| LAO/AO transport system ATPase [Streptomyces sp. e14]
 gi|292834772|gb|EFF93121.1| LAO/AO transport system ATPase [Streptomyces sp. e14]
          Length = 333

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 69/213 (32%), Gaps = 36/213 (16%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKI----WADR 164
           +V+ + G  GVGK+T    L       G +V + A D        A+   ++     A  
Sbjct: 12  YVVGLTGSPGVGKSTSTSALVTAYRKQGKRVGVLAVDPSSPFSGGALLGDRVRMSDHASD 71

Query: 165 TSADFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                           LA+   +A +   A   DV++++T G   +              
Sbjct: 72  PGVYIRSMATRGHLGGLAWAAPQAIRVLDAAGCDVILVETVGVGQSEVE----------- 120

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
              +   A  SV+ +       + ++  +      G    ++ K D      G       
Sbjct: 121 ---IASQADTSVVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRD----GADATARE 170

Query: 282 HKIPVYFLGVGE--GINDLEPFVAKDFSAVITG 312
                + LG+GE  G  D  P + K  +A   G
Sbjct: 171 LN---HMLGLGEARGPGDWRPPIVKTVAARAEG 200


>gi|282855506|ref|ZP_06264825.1| LAO/AO transport system ATPase [Pyramidobacter piscolens W5455]
 gi|282586649|gb|EFB91898.1| LAO/AO transport system ATPase [Pyramidobacter piscolens W5455]
          Length = 376

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 70/222 (31%), Gaps = 37/222 (16%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +  +      ELI K+L                   V GV G GK+T I  L   + D
Sbjct: 72  ESNAPKHFATAQELIQKLLPHTGGSMRVG---------VTGVPGAGKSTFIEALGSWLCD 122

Query: 138 AGLKVMLAAGD---TFRSAAI-------DQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            G +V + A D   T    ++       ++L    +                  + E   
Sbjct: 123 RGHRVAVLAVDPSSTVTKGSVLGDKTRMEKLSRHPNAFVRPSPSGGTLGGVTRKSRETLL 182

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A   DV++++T G   + + +                        ++  T   + L+
Sbjct: 183 LVEAAGYDVVLVETVGVGQSETTVRN----------------MVDYFLMVALTGAGDDLQ 226

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
            ++          +++ K DG  +    +       + +++L
Sbjct: 227 GIKKGIMEIA-DSILVNKADGDNKV-KALSARADFDMMLHYL 266


>gi|92114744|ref|YP_574672.1| putative ABC transporter ATP-binding protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91797834|gb|ABE59973.1| ABC transporter related protein [Chromohalobacter salexigens DSM
           3043]
          Length = 578

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +  ++ +VG NG GK+T+   ++    +      +  GDT   A ++QL+   D     
Sbjct: 372 PKGAIVGIVGGNGAGKSTLFKLIAG--KEQPDSGEVVIGDTVDIAYVEQLRDHLDDKQTV 429

Query: 169 FVCSEIGSDAAAL 181
           +     G D   +
Sbjct: 430 WEAVSDGQDMINI 442


>gi|242371717|ref|ZP_04817291.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis M23864:W1]
 gi|242350577|gb|EES42178.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis M23864:W1]
          Length = 643

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 26/190 (13%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +    DV   + L    +       P+++P N + S   H I V+G NGVGKTT+I  +
Sbjct: 323 ERNTGNDVMHIKNLKIGYD------APITEPINIEVSKGDH-IAVIGPNGVGKTTLIKTI 375

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIW--ADRTSADFVCSEIGSDAAALAYEAFKQA 189
           ++      L   +  G   +    DQ +    +++T  D+V  +  +           + 
Sbjct: 376 AQ--KQDNLGGSITFGANLQIGYYDQKQAEFKSNKTILDYVWDQYPTMNEKDVRAVLGRF 433

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG-----QN 244
              + DV  I         + L   +  + R           +VL + + T       + 
Sbjct: 434 LFVQEDVKKIINDLSGGEKARLQLALLMLQR----------DNVLILDEPTNHLDIDSKE 483

Query: 245 ALRQVEMFHA 254
            L Q      
Sbjct: 484 MLEQALKHFE 493


>gi|150005870|ref|YP_001300614.1| putative ParA-related protein [Bacteroides vulgatus ATCC 8482]
 gi|149934294|gb|ABR40992.1| putative ParA-related protein [Bacteroides vulgatus ATCC 8482]
          Length = 282

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTF------RSAAIDQLKIWADRTSADFVCSEI 174
           GVGKTT+    +  +   G++V++   D        R A I   K + +      V S  
Sbjct: 16  GVGKTTLCVTFANYLVAKGVRVLVIDCDFQHSIMKCRKADI---KKYGEEQLPYEVWSYE 72

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
            ++   +     K     ++DV++ID+ G
Sbjct: 73  PNNKVEMTSLVEKLHNDPEIDVVLIDSPG 101


>gi|253746103|gb|EET01608.1| Uridine kinase [Giardia intestinalis ATCC 50581]
          Length = 679

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
                V+ + G +  GKTT   KL+  +   G + ++ + D +
Sbjct: 409 DKEVKVVFISGPSSSGKTTFAKKLAYNLKVMGREPLIISLDNY 451


>gi|153855470|ref|ZP_01996601.1| hypothetical protein DORLON_02615 [Dorea longicatena DSM 13814]
 gi|149752124|gb|EDM62055.1| hypothetical protein DORLON_02615 [Dorea longicatena DSM 13814]
          Length = 354

 Score = 41.4 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + + Q  +  L  K     +S +  LY     +  +L    K    + S    + L+ G 
Sbjct: 1   MDLCQDFLHSLEKKVILISISKRGCLY-----VKTILRDRKKNIRGN-SIMVKIDLITGF 54

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            G GKTT I K +K + D G  + +   D
Sbjct: 55  LGSGKTTFIKKYAKHLIDKGDNIGILEND 83


>gi|302547999|ref|ZP_07300341.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302465617|gb|EFL28710.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
           himastatinicus ATCC 53653]
          Length = 845

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 14/131 (10%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDI--- 58
            +Q VA+E       L    A    ++ EG        R+ +   E++      +DI   
Sbjct: 461 KDQAVAAEQYERATALRDRIAELGARITEGSGAQFHGSRVSEVTVEDI------ADIVSR 514

Query: 59  --GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-I 114
             G+ V+  + +E   +    +  + + +    E +  +   + +        HRP    
Sbjct: 515 QTGIPVS-SLTQEERERLLGLEEHLHKRVIGQEEAVAAVSDAVLRSRAGLADPHRPSGSF 573

Query: 115 LVVGVNGVGKT 125
           L +G  GVGKT
Sbjct: 574 LFLGPTGVGKT 584


>gi|224092743|ref|XP_002189212.1| PREDICTED: similar to 6-phosphofructo-2-kinase [Taeniopygia
           guttata]
          Length = 506

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           +     L +P     ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R 
Sbjct: 17  NDNRPALPRPCGPQLANSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76

Query: 153 AAIDQL 158
            A+   
Sbjct: 77  EAVKHY 82


>gi|307327943|ref|ZP_07607125.1| LAO/AO transport system ATPase [Streptomyces violaceusniger Tu
           4113]
 gi|306886461|gb|EFN17465.1| LAO/AO transport system ATPase [Streptomyces violaceusniger Tu
           4113]
          Length = 319

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 81/250 (32%), Gaps = 44/250 (17%)

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
            +D+       +VE+    R      +  ++   S  + +++  L+           +V+
Sbjct: 1   MADV--PT---LVEQARQGRPRAVARLISLVEGASPQLREVMAALAPLAGGA-----YVV 50

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSA 167
            V G  GVGK+T    L       G +V + A D        A+      +   A     
Sbjct: 51  GVTGSPGVGKSTSTSALVSAYRRMGKRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGV 110

Query: 168 DFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                        LA+   +A +   A   DV++++T G   +                 
Sbjct: 111 YIRSMATRGHLGGLAWAAPQAIRVLDAAGCDVVLVETVGVGQSEVE-------------- 156

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKI 284
           +   A  SVL +       + ++  +      G    ++ K D   R G        +  
Sbjct: 157 IAAQADTSVLLLAPGM--GDGIQAAKAGILEIG-DVYVVNKAD---REGADATARELN-- 208

Query: 285 PVYFLGVGEG 294
             + LG+GEG
Sbjct: 209 --HMLGLGEG 216


>gi|237744957|ref|ZP_04575438.1| phospholipid-lipopolysaccharide ABC transporter [Fusobacterium sp.
           7_1]
 gi|229432186|gb|EEO42398.1| phospholipid-lipopolysaccharide ABC transporter [Fusobacterium sp.
           7_1]
          Length = 583

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 16/116 (13%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPLSKP 102
           +L+D L  +D    V +   E++ T  + + V     + D+               + K 
Sbjct: 305 DLQDSLPSAD---RVVEIFDEKVETDVFGEAVEFNEKIQDIKFENVNYKYDDSNEYVLKN 361

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-------AGLKVMLAAGDTFR 151
            N D      ++  VG +G GKTT++  L++  +         G+ +     D +R
Sbjct: 362 INLDVKAG-EIVAFVGKSGSGKTTLVNLLARFFNTDEGKITVNGVNIKNIHLDIYR 416


>gi|164423299|ref|XP_962038.2| hypothetical protein NCU08827 [Neurospora crassa OR74A]
 gi|157070034|gb|EAA32802.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 328

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           + + RP +I + GV GVGKTT++  L++ +    GL  ++ + D F     +QLK+  + 
Sbjct: 65  EANPRPFIIGLNGVQGVGKTTLVKALAETLQEREGLNTLVVSIDDFYLTHEEQLKLAEEN 124

Query: 165 TS 166
           + 
Sbjct: 125 SD 126


>gi|158298980|ref|XP_319111.4| AGAP009973-PA [Anopheles gambiae str. PEST]
 gi|157014148|gb|EAA13918.4| AGAP009973-PA [Anopheles gambiae str. PEST]
          Length = 570

 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++
Sbjct: 129 EDVKGCDEAKQELKEVVEFLKNPGKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVA 183

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                   A    F +A  +  ++            +       L   A ++A      +
Sbjct: 184 GE------AGVPFFHAAGPEFDEVL---------VGQGARRVRDLFKAAKERAPCVIF-I 227

Query: 197 LIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
             ID+ G    NS+L       + ++L  +D    +  + VL AT  ++ L Q  +    
Sbjct: 228 DEIDSVGAKRTNSVLHPYANQTINQLLSEMDGFQQNEGVIVLGATNRRDDLDQALLRPGR 287

Query: 256 AGTTGLIMT 264
                ++ T
Sbjct: 288 FDVEVVVPT 296


>gi|221115485|ref|XP_002156878.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 551

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 23/196 (11%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
            D +    +I++VG+ G GK+ ++       +       +   D FR   I + + +A+R
Sbjct: 15  TDITIPKKIIMMVGMTGAGKSLMLN------NMVNYVYGVNFSDNFRFKLIWEDEEFAER 68

Query: 165 -TSADFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             S DF  S   S    ++  A            +++IDT G    ++  +     + R 
Sbjct: 69  KASGDFSMSHAESMTRWVSSYALHHKVGFRVPYTLVLIDTPG--FGDTRGINFDESISRS 126

Query: 222 LKRLDPHAPH------SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK------MDGT 269
           LK       H      S+  V+ ++  +    Q+ +F+AV    G  +T+          
Sbjct: 127 LKEFFSDKVHPIDELSSIGLVIQSSQSRLTAEQIYIFNAVLNIFGKNVTENICMLFTFAD 186

Query: 270 ARGGGLIPIVVTHKIP 285
           A+    +  V   KIP
Sbjct: 187 AQLPPALETVRKEKIP 202


>gi|78061829|ref|YP_371737.1| AAA ATPase, Clp [Burkholderia sp. 383]
 gi|77969714|gb|ABB11093.1| AAA ATPase, Clp [Burkholderia sp. 383]
          Length = 893

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 73/199 (36%), Gaps = 24/199 (12%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD-IGVAVAQKIVEELLT 72
           + +L K    T  KL+  +  +     +D+ +  E     I SD  G+ V + +++E+  
Sbjct: 521 VDQLRK-LERTLAKLQGDVPLVFPE--VDESIVAE-----IVSDWTGIPVGRMVIDEVAA 572

Query: 73  KRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGK 130
            R   +    RV+     L +    +  ++    D      V L+ G +GVGKT T +  
Sbjct: 573 VRRLPETLGARVIGQSEALHLIGERVQTARSGMTDPKKPLGVFLLAGPSGVGKTETALA- 631

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA- 189
           L++ +      ++              +  + +  +   +                 +A 
Sbjct: 632 LAEALYGGEQNLITIN-----------MSEYQESHTVSGLKGAPPGYVGYGEGGVLTEAV 680

Query: 190 QAKKVDVLIIDTAGRLHNN 208
           + +   V+++D   + H +
Sbjct: 681 RRRPYAVVLLDEIEKAHRD 699


>gi|301769967|ref|XP_002920395.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           3-like isoform 2 [Ailuropoda melanoleuca]
          Length = 512

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           +   L +      ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A
Sbjct: 18  LRPSLPRSCGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 77

Query: 155 IDQL 158
           + Q 
Sbjct: 78  VKQY 81


>gi|301769965|ref|XP_002920394.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           3-like isoform 1 [Ailuropoda melanoleuca]
          Length = 518

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           +   L +      ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A
Sbjct: 18  LRPSLPRSCGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 77

Query: 155 IDQL 158
           + Q 
Sbjct: 78  VKQY 81


>gi|240103987|ref|YP_002960296.1| Lysine/arginine/ornithine (LAO/AO) transport system ATPase (argK)
           [Thermococcus gammatolerans EJ3]
 gi|239911541|gb|ACS34432.1| Lysine/arginine/ornithine (LAO/AO) transport system ATPase (argK)
           [Thermococcus gammatolerans EJ3]
          Length = 321

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 11/152 (7%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E L+    + D      L  + E   +    + +   +  + + +V+ + G  G GK+T
Sbjct: 3   LESLIQSALSGDKKAIARLITLVENDEEKAREIIRRI-YPHTGKAYVVGITGPPGSGKST 61

Query: 127 VIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSEIGSDAA 179
           ++ KL K   D G KV + A D    F   A+      ++  +                 
Sbjct: 62  LLDKLIKLARDEGHKVGVIAIDPTSPFTGGALLGDRLRMQRHSTDPGVFIRSMATRGSLG 121

Query: 180 ALA---YEAFKQAQAKKVDVLIIDTAGRLHNN 208
            LA    +A K   A   D++ ++T G     
Sbjct: 122 GLAKATNDAVKVLDASGYDLIFVETVGVGQIE 153


>gi|121583419|ref|YP_973850.1| cobyrinic acid a,c-diamide synthase [Polaromonas naphthalenivorans
           CJ2]
 gi|120596673|gb|ABM40108.1| Cobyrinic acid a,c-diamide synthase [Polaromonas naphthalenivorans
           CJ2]
          Length = 397

 Score = 41.0 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN---GVGKTTVIGKLSKKMSDAGLK 141
           L +  E + +     SK         P  +++   N   GVGK+T    L++ +S  G K
Sbjct: 87  LKEAQEWVLEYRHSKSKRGCIAAGQMPKAVVIAAGNFKGGVGKSTTAATLAQGLSLRGHK 146

Query: 142 VMLAAGD 148
           V++   D
Sbjct: 147 VLVIDTD 153


>gi|195027557|ref|XP_001986649.1| GH20407 [Drosophila grimshawi]
 gi|193902649|gb|EDW01516.1| GH20407 [Drosophila grimshawi]
          Length = 5298

 Score = 41.0 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 74/223 (33%), Gaps = 28/223 (12%)

Query: 38   SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
             +R+D  +  +++     S    AV++ I++ +   +   D+   R +  ++ L  K L 
Sbjct: 1362 KKRIDLELLFDIQTKRESS----AVSRHILDAIRNFKQRGDIVWTRNMTRMAVLTAKAL- 1416

Query: 98   PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK----KMSDAGLKVMLAAGDTFRSA 153
               +P           +L+VG+ G GKTTV   L+     ++      +     D     
Sbjct: 1417 QFDEP-----------VLLVGLTGCGKTTVCQLLASIAQVRLRILNCHMHTEGADF---- 1461

Query: 154  AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
             +  L+    + + +    ++   A      A  +      D +   +         L  
Sbjct: 1462 -LGGLRPCRGQQNGEQQAQKLFEWADGPLIYAMLEGSYFMADEI---SLAEDSVLERLNC 1517

Query: 214  GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
             +     VL           + V ++   ++ + Q +      
Sbjct: 1518 ILEPERSVLLAEKGGVVEEDVTVSESNLNKDFIVQAKSGFQFL 1560


>gi|222478946|ref|YP_002565183.1| LAO/AO transport system ATPase [Halorubrum lacusprofundi ATCC
           49239]
 gi|222451848|gb|ACM56113.1| LAO/AO transport system ATPase [Halorubrum lacusprofundi ATCC
           49239]
          Length = 378

 Score = 41.0 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 59/168 (35%), Gaps = 27/168 (16%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAI--DQLKIWADRTSA 167
           VI + G  G GK+T++ KL+    D G  V + A D        A+  D++++ ++    
Sbjct: 58  VIGITGAPGAGKSTLVDKLAAAYRDRGDTVGVVAVDPSSPYTGGAVLGDRIRMASNVGDM 117

Query: 168 DFV-----CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D               +    +A K   A   DV+II+T G   N               
Sbjct: 118 DVFFRSMSARGQLGGLSMATADAVKALDAFGKDVVIIETVGAGQNE-------------- 163

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
             +D       + VL      + ++ ++      G    ++ K D   
Sbjct: 164 --VDVVRTADTVAVLVQPGSGDDVQTLKAGILEIG-DVFVVNKADMDG 208


>gi|123478314|ref|XP_001322320.1| ABC transporter family protein [Trichomonas vaginalis G3]
 gi|121905164|gb|EAY10097.1| ABC transporter family protein [Trichomonas vaginalis G3]
          Length = 781

 Score = 41.0 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +  VI+++G NG GK+T+I  LS  +  +G ++ L  GD       +Q +   +     
Sbjct: 493 KKGEVIVMIGPNGAGKSTIINTLSAAIKCSGGEISLFDGD-----PTNQFQEIHNYLGIC 547

Query: 169 F 169
           F
Sbjct: 548 F 548


>gi|329115444|ref|ZP_08244193.1| Cobyrinic acid A,C-diamide synthase [Acetobacter pomorum DM001]
 gi|326695222|gb|EGE46914.1| Cobyrinic acid A,C-diamide synthase [Acetobacter pomorum DM001]
          Length = 453

 Score = 41.0 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 60/193 (31%), Gaps = 37/193 (19%)

Query: 111 PHVILVVGV-NGVGKTT-VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           P +I+V    +G GKTT  +  L+      GL          R  A+   K   D     
Sbjct: 4   PRIIMVAAPRSGGGKTTVTLALLAA-FQRRGL----------RVGAV---KTGPDYIDPA 49

Query: 169 FVCSEIGSDAAALAYE--------AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           F  +        L               A AK+VDV+++++A        L  G+     
Sbjct: 50  FHAAITHRPPLNLDSWCMPANLLAGIMNAAAKEVDVVVVESA------MGLFDGLMAPKN 103

Query: 221 VLKR---LDPHAPHSVLQVLDATTGQNALRQVEMFH----AVAGTTGLIMTKMDGTARGG 273
                  +       VL VLD +    ++  +              G+++ ++       
Sbjct: 104 ARGAPSDIAALFGIPVLLVLDVSGQGQSVGPIAQGFARWSDAVQVHGVVLNRVASERHER 163

Query: 274 GLIPIVVTHKIPV 286
                V    +PV
Sbjct: 164 LARSAVAMADLPV 176


>gi|325108384|ref|YP_004269452.1| cobalamin synthesis protein P47K [Planctomyces brasiliensis DSM
           5305]
 gi|324968652|gb|ADY59430.1| cobalamin synthesis protein P47K [Planctomyces brasiliensis DSM
           5305]
          Length = 370

 Score = 41.0 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++ G  G GKTT + +L+ +    GL V +   D
Sbjct: 9   MLGGFLGAGKTTTLARLAGEYRQQGLNVGIVTND 42


>gi|302348877|ref|YP_003816515.1| Transport system kinase [Acidilobus saccharovorans 345-15]
 gi|302329289|gb|ADL19484.1| Transport system kinase [Acidilobus saccharovorans 345-15]
          Length = 332

 Score = 41.0 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 10/116 (8%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKI 160
           + + HVI + G+ G GK+T+I KL  +    G KV + A D        A+      ++ 
Sbjct: 49  AGKAHVIGITGIPGAGKSTLISKLIIEFRRRGYKVAVIAIDPSSPLTGGALLGDRLRMQE 108

Query: 161 WADRTSADFVCSEIGSDAAALAYEA---FKQAQAKKVDVLIIDTAGRLHNNSILMA 213
            A+                 L+  A    +   A   D +II+T G   + + +M 
Sbjct: 109 RAEDPGIFIRSVSTRGLKGGLSLAALSMIEALDALGYDKIIIETVGVGQSETDVMN 164


>gi|203284377|ref|YP_002222117.1| ABC transporter, ATP-binding protein [Borrelia duttonii Ly]
 gi|201083820|gb|ACH93411.1| ABC transporter, ATP-binding protein [Borrelia duttonii Ly]
          Length = 277

 Score = 41.0 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 47/130 (36%), Gaps = 7/130 (5%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E +  K     V+   ++     ++ K    ++        HR  V+ ++G NG GKTT
Sbjct: 23  IESIKEKLSLNAVTD--IVLKADSIVKKYGEKVAVNGVTIDVHRGEVVGLLGPNGAGKTT 80

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
               +   +   G +V++   D  +    ++ +         ++  E          +  
Sbjct: 81  TFYTIVGFIKANGGRVLINNHDVSKLNMYERAR-----LGIVYLPQEPSIFRELTVEDNI 135

Query: 187 KQAQAKKVDV 196
             A  ++ D+
Sbjct: 136 LVALERREDL 145


>gi|78777682|ref|YP_393997.1| hypothetical protein Suden_1485 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498222|gb|ABB44762.1| Protein of unknown function DUF59 [Sulfurimonas denitrificans DSM
           1251]
          Length = 368

 Score = 41.0 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 77/238 (32%), Gaps = 34/238 (14%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV- 117
              VAQ+I ++   +  A       V     +     +    KP N + +      L+V 
Sbjct: 48  APEVAQQITDDATKELKAVGAGAVVVNVKAPK-----MPEAQKPKNKNIAPHIKNFLMVS 102

Query: 118 -GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
            G  GVGK+T    ++  ++  G KV L   D +                 +        
Sbjct: 103 SGKGGVGKSTTSVNIAIALAAQGKKVGLLDADIYGPN-------IPRMMGIE-------D 148

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHN-NSILMAGIGKMIRVLKR--LDPHAPHSV 233
               +        +A  ++V+   + G L      LM     +++ +++   D       
Sbjct: 149 QKPEVTGNKVLPMKAYGIEVM---SMGSLMEPGQSLMWRGAMIMKAIEQFLRDILWSDLD 205

Query: 234 LQVLDA--TTGQNALRQVEMFHAVAGTTGLI--MTKMDGTARGGGLIPIVVTHKIPVY 287
           + V+D    TG   L   +     AG T        +D + R    + +     IP+ 
Sbjct: 206 VLVIDMPPGTGDAQLTLAQSVPVTAGLTVTTPQTVSLDDSRR---SLDMFKKLNIPIA 260


>gi|311265884|ref|XP_003130871.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           3-like [Sus scrofa]
          Length = 772

 Score = 41.0 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 282 KLANSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 334


>gi|300175704|emb|CBK21247.2| unnamed protein product [Blastocystis hominis]
          Length = 443

 Score = 41.0 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           VI +VG++G GKT V  K+S+ +   G    + +    R
Sbjct: 10  VICMVGISGCGKTYVANKISRFLKWKGYNARVFSCSDVR 48


>gi|254425221|ref|ZP_05038939.1| ABC transporter, ATP-binding protein [Synechococcus sp. PCC 7335]
 gi|196192710|gb|EDX87674.1| ABC transporter, ATP-binding protein [Synechococcus sp. PCC 7335]
          Length = 598

 Score = 41.0 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L P+    +   S    VI +VG +G GKTT++  L++       ++++   D      I
Sbjct: 372 LEPVLTQLDLLVSPG-EVIALVGPSGAGKTTIVNLLARFYDPQAGEILIDGID------I 424

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
             + I + R     V  E    +  +A            D +
Sbjct: 425 KTVTIASLRHQIGTVPQETALFSGTIAQNIAYGQSELDYDAI 466


>gi|78062432|ref|YP_372340.1| AAA ATPase, Clp [Burkholderia sp. 383]
 gi|77970317|gb|ABB11696.1| AAA ATPase, Clp [Burkholderia sp. 383]
          Length = 887

 Score = 41.0 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 66/207 (31%), Gaps = 27/207 (13%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGV 119
               K+ + L  +   +       +  ++E I      L  P       +PH V L+ G 
Sbjct: 575 QAVLKLADTLGERVVGQK----HAVELIAERIQTARAKLDDP------KKPHGVFLLCGP 624

Query: 120 NGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           +GVGKT T +  L+  +       +      F+ A           T +    +  G   
Sbjct: 625 SGVGKTETALA-LADTLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVG 673

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQ 235
                   +  + +   V+++D   + H +             +   +  D    H+V+ 
Sbjct: 674 YGQGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRDIDFRHTVIL 733

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLI 262
            L +  G + + Q+         T  +
Sbjct: 734 -LTSNVGADRVMQLCRDPEHLPDTQTL 759


>gi|57640850|ref|YP_183328.1| ParA/MinD family ATPase [Thermococcus kodakarensis KOD1]
 gi|57159174|dbj|BAD85104.1| ATPase involved in chromosome partitioning, ParA/MinD family
           [Thermococcus kodakarensis KOD1]
          Length = 248

 Score = 41.0 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI+V G  G GKTT    LS  ++    +V+   GD +       L       +  +  
Sbjct: 2   AVIVVTGRGGAGKTTTTANLSSHLAMKEYRVLAIDGDLYLPN----LGFHFGLDAVKYSV 57

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             +  +       A  + +      + +   G      +L     K++ V+ ++
Sbjct: 58  HTLMKNPDIDPEWAIYKHRETG---VYV-MPGSTQLQDVLGISPRKLVDVIDKV 107


>gi|66819051|ref|XP_643185.1| cytoplasmic dynein heavy chain [Dictyostelium discoideum AX4]
 gi|166203483|sp|P34036|DYHC_DICDI RecName: Full=Dynein heavy chain, cytoplasmic; AltName: Full=Dynein
            heavy chain, cytosolic; Short=DYHC
 gi|60471296|gb|EAL69258.1| cytoplasmic dynein heavy chain [Dictyostelium discoideum AX4]
          Length = 4730

 Score = 41.0 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 8/61 (13%)

Query: 67   VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +++L  K   ++++ QR L    E + K+L  L +  N +     H +++VG +G GKTT
Sbjct: 2233 MDQLRKK--IQEIAKQRHLVTKQEWVEKIL-QLHQILNIN-----HGVMMVGPSGGGKTT 2284

Query: 127  V 127
             
Sbjct: 2285 S 2285


>gi|165971489|gb|AAI58215.1| LOC100137715 protein [Xenopus laevis]
          Length = 533

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 68/189 (35%), Gaps = 20/189 (10%)

Query: 112 HVILVVGVNGVGKTTVI-GKLSKKMSDA---GLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            +I++VG  G GKTT+I   ++  +        +++L   DT RS A  Q          
Sbjct: 73  KIIMLVGATGSGKTTLINALINYILGVKWEDNYRLILIEEDTNRSQAHSQTSEVTAYQLN 132

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVD-------VLIIDTAGR-LHNNSILMAGIGKMI 219
                 +  +   +    F   + +  D        L  D+ G   H ++I       + 
Sbjct: 133 HIEAFTVPYNLTIIDTPGFDDTRGRDHDKEIPRQLKLCFDSPGSISHIDAIYFVLPSGLP 192

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
           R+            +  + A   +N + Q+    A AG   +++  +  +     +  + 
Sbjct: 193 RLTSTQ--EYIFGSMLSIFAKDIENNI-QICATFADAGKP-MVLKALTES----NVACVK 244

Query: 280 VTHKIPVYF 288
             H IPVYF
Sbjct: 245 NRHGIPVYF 253


>gi|72392515|ref|XP_847058.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175577|gb|AAX69710.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70803088|gb|AAZ12992.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 847

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 30/78 (38%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           L +     +++Q+ L   ++ + + L     P      + P VI+ VG  G GK+T    
Sbjct: 465 LQEVRRSWITLQQQLVKHTKDMREHLQLYEPPVAEAAINNPDVIMCVGPQGCGKSTFCRA 524

Query: 131 LSKKMSDAGLKVMLAAGD 148
               +   G K      D
Sbjct: 525 FCVLLQKVGQKPRWINQD 542


>gi|7227|emb|CAA78827.1| cytoplasmic dynein heavy chain [Dictyostelium discoideum]
          Length = 4725

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 8/61 (13%)

Query: 67   VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            +++L  K   ++++ QR L    E + K+L  L +  N +     H +++VG +G GKTT
Sbjct: 2228 MDQLRKK--IQEIAKQRHLVTKQEWVEKIL-QLHQILNIN-----HGVMMVGPSGGGKTT 2279

Query: 127  V 127
             
Sbjct: 2280 S 2280


>gi|241668806|ref|ZP_04756384.1| microtubule-severing ATPase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 649

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 152 LGEDEIKVTLEDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 209

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 210 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFDQAKK 252

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 253 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 310

Query: 244 NALRQV 249
           + L + 
Sbjct: 311 DVLDKA 316


>gi|167626375|ref|YP_001676875.1| microtubule-severing ATPase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596376|gb|ABZ86374.1| Microtubule-severing ATPase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 649

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 152 LGEDEIKVTLEDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 209

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 210 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFDQAKK 252

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 253 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 310

Query: 244 NALRQV 249
           + L + 
Sbjct: 311 DVLDKA 316


>gi|83952811|ref|ZP_00961541.1| arginine/ornithine transport system ATPase [Roseovarius nubinhibens
           ISM]
 gi|83835946|gb|EAP75245.1| arginine/ornithine transport system ATPase [Roseovarius nubinhibens
           ISM]
          Length = 382

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 49/234 (20%)

Query: 57  DIGVAVAQKIVEELLT---KRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWDFS 108
           D+ +    ++ E +     +  ++ +++     D      +EL+  +     +      S
Sbjct: 58  DMNI---TELSERITRGDRRALSRGITLVESSRDDHRAQAAELLDLLRGSGREALRIGLS 114

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAI-----DQLKIW 161
             P         GVGK+T I      + D G  V + A D  + RS         +++  
Sbjct: 115 GTP---------GVGKSTFIEGFGMYLLDQGKSVAVLAVDPSSARSGGSILGDKTRMERL 165

Query: 162 ADRTSADFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +    A    S   S    +A    EA    +A   DV++I+T G   + + ++A +  +
Sbjct: 166 SRAKGAFIRPSPSQSQLGGVARRSREAVALCEAAGFDVVLIETVGVGQSET-MVAEMADL 224

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM-FHAVAGTTGLIMTKMDGTAR 271
                            +L A  G + L+ V+     +A    +++ K DG  +
Sbjct: 225 ---------------FLLLLAPAGGDELQGVKRGIMEIADL--ILVNKADGDLK 261


>gi|225449875|ref|XP_002267579.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 668

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 20/116 (17%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
           +S+ +K+ +     + +L     D I+ RR+D  ++E +            V+  I E L
Sbjct: 120 MSFNKKMGEKINKITREL-----DAIAKRRVDLHLKEGVR----------GVSFGIEERL 164

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            T     +  +     D  ++I  ML   +   +     R  VI +VG+ G+GKTT
Sbjct: 165 QTTSLVDESRIHGRDADKEKIIELMLSDEATKCD-----RVSVISMVGMGGIGKTT 215


>gi|56965211|ref|YP_176943.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Bacillus
           clausii KSM-K16]
 gi|56911455|dbj|BAD65982.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Bacillus
           clausii KSM-K16]
          Length = 700

 Score = 41.0 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 75/189 (39%), Gaps = 25/189 (13%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI-------VEELLTKRYAKDV 79
           K++  + + +S     D   E++E +LI    GV V +K+       +++L  +  AK +
Sbjct: 359 KVQAKLQEAVSELEPVDVTVEDIE-MLIERQTGVPV-RKLQKAEQQKMKDLANRLAAKVI 416

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             +  +  V++ + +    L         +RP   L VG  GVGKT +  +L++     G
Sbjct: 417 GQEEAVDKVAKAVKRSRAGL------KAGNRPISFLFVGPTGVGKTELTKQLAQ--EVYG 468

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            K  +   D          +     + +  + S  G        +  ++ +     ++++
Sbjct: 469 KKESMIRLDMS--------EFMEKHSVSKLIGSPPGYVGHEEGGQLTERVRRNPYSIILL 520

Query: 200 DTAGRLHNN 208
           D   + H +
Sbjct: 521 DEIEKAHPD 529


>gi|317008936|gb|ADU79516.1| cell division protein [Helicobacter pylori India7]
          Length = 550

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 83/261 (31%), Gaps = 38/261 (14%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISS--RRLDDGVREELEDLLIRSDIGV 60
            + +  E    + K++K F +    +   +  I     +RLD  +        + S    
Sbjct: 93  PESMPIEKRENLSKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMS-------LES---- 141

Query: 61  AVAQKIVEELLTK--RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PHVILV 116
              +  +E    +             + +V E + +++  L  P  +       P  +L+
Sbjct: 142 -TTKNGLENAFQRYDALGVRFEDIAGVDEVKEELLEVVDYLKNPKKYQDLGIFLPKGVLL 200

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKT     ++K ++            +    A  Q+ + A       +      
Sbjct: 201 IGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFMHAKR 252

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
            A ++ +          +D   ID  G+             + ++L  +D    +  + V
Sbjct: 253 HAPSIIF----------IDE--IDALGKARGGHRSDEREATLNQLLTEMDGFLQNDEVVV 300

Query: 237 LDATTGQNALRQVEMFHAVAG 257
           + AT     + +  +      
Sbjct: 301 IGATNQMEVMDEALLRSKRFD 321


>gi|293397489|ref|ZP_06641741.1| partitioning protein [Serratia odorifera DSM 4582]
 gi|291420068|gb|EFE93345.1| partitioning protein [Serratia odorifera DSM 4582]
          Length = 213

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 8/98 (8%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSD-AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           I VVG N  G  KTT    L+  ++   G  V+L   D  RSA+    +  A+  S    
Sbjct: 3   ITVVGGNKGGSSKTTTATNLAVALAMVHGKDVVLVDSDIQRSASRWHAEREANCLSPAIT 62

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             E   + +        ++ A+K D +I+D AGR    
Sbjct: 63  LIEKTGNISQTL-----RSLAEKYDHVIVDVAGRNSRE 95


>gi|255283382|ref|ZP_05347937.1| CobW/P47K family protein [Bryantella formatexigens DSM 14469]
 gi|255266030|gb|EET59235.1| CobW/P47K family protein [Bryantella formatexigens DSM 14469]
          Length = 345

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 9/117 (7%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+ G  G GKTT I K +K +  AG  + +   D     A++   +       D    E+
Sbjct: 38  LITGFLGAGKTTFIKKYAKHLMKAGQNICILENDY---GAVNVDMMLLQELEGDQCELEM 94

Query: 175 GSDAAALAYEA------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
            + A                      D ++++ +G    +    A   + +     +
Sbjct: 95  VAGACDKDCHRRRFKTKLIAMGMCGYDRVLVEPSGIFDVDEFFDALCEEPLDNWYEI 151


>gi|121607681|ref|YP_995488.1| general secretory pathway protein E [Verminephrobacter eiseniae
           EF01-2]
 gi|121552321|gb|ABM56470.1| type II secretion system protein E (GspE) [Verminephrobacter
           eiseniae EF01-2]
          Length = 578

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 110 RPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT--FRSAAIDQLKIWAD 163
           RPH IL+V G  G GKTT +   +    DAG + ++   D   ++ A I+Q+++   
Sbjct: 323 RPHGILLVTGPTGSGKTTTLY-AALTKIDAGEQKIITVEDPVEYQLAGINQIQVHTQ 378


>gi|317012128|gb|ADU82736.1| cell division protein (ftsH) [Helicobacter pylori Lithuania75]
          Length = 550

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 22/175 (12%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +V E + +++  L  P  +       P  +L++G  GVGKT     ++K ++      
Sbjct: 167 VDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTM----IAKALASEARVP 222

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
                 +    A  Q+ + A       +       A ++ +          +D   ID  
Sbjct: 223 FFYESGS----AFSQIYVGAGAKKVHELFMHAKRHAPSIIF----------IDE--IDAL 266

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           G+             + ++L  +D    +  + V+ AT     + +  +      
Sbjct: 267 GKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFD 321


>gi|325677867|ref|ZP_08157509.1| phosphoribulokinase/uridine kinase family protein [Ruminococcus
           albus 8]
 gi|324110421|gb|EGC04595.1| phosphoribulokinase/uridine kinase family protein [Ruminococcus
           albus 8]
          Length = 314

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 64  QKI-VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +KI + +L +K   + +     + + +    K L   ++    +   RP +IL+ G +G 
Sbjct: 2   KKININKLNSKVAEQGL----FIEESNAKYEKKLRRAAERIADEHRERP-IILLAGPSGS 56

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           GKTT   K+   +   G+     + D +
Sbjct: 57  GKTTSALKIDDMLDGMGIHTHTISMDDY 84


>gi|118617167|ref|YP_905499.1| arginine/ornithine transport system ATPase [Mycobacterium ulcerans
           Agy99]
 gi|118569277|gb|ABL04028.1| LAO/AO transport system kinase [Mycobacterium ulcerans Agy99]
          Length = 329

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 19/141 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +       V EL+  +L           S + H + + GV GVGK+T I  L   + +
Sbjct: 32  ESTRADDRRQVQELLLALLPD---------SGKAHRVGITGVPGVGKSTTIEALGMYLIE 82

Query: 138 AGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            G KV + A D  + R+          + +L +  D        S      A    E+  
Sbjct: 83  QGHKVAVLAVDPSSTRTGGSILGDKTRMARLAMHPDAYVRPSPTSGTLGGVAKATRESVV 142

Query: 188 QAQAKKVDVLIIDTAGRLHNN 208
             +A   DV++++T G   + 
Sbjct: 143 LLEAAGFDVVLVETVGVGQSE 163


>gi|115679221|ref|XP_786478.2| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38,
           partial [Strongylocentrotus purpuratus]
 gi|115964323|ref|XP_001187550.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38,
           partial [Strongylocentrotus purpuratus]
          Length = 1200

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 15/144 (10%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSD--IGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
              + DI+  ++ D+      +D L   D  I     Q+  + +  K  A   S    + 
Sbjct: 473 GTKLGDIMGVKKEDE------KDQLGTEDENINYKSQQQFADHMKEKTEAA--SAFAKMK 524

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            + E    + +  ++    +      V+++VG  G GKTT   +L++ + + G       
Sbjct: 525 SLREQREYLPVFAARQVLLNVIRDNSVVIIVGETGSGKTT---QLTQYLHEDGYSKFGMI 581

Query: 147 GDTF--RSAAIDQLKIWADRTSAD 168
           G T   R AA+   K  ++     
Sbjct: 582 GCTQPRRVAAMSVAKRVSEEMDVP 605


>gi|198461041|ref|XP_001361892.2| GA17483 [Drosophila pseudoobscura pseudoobscura]
 gi|198137214|gb|EAL26471.2| GA17483 [Drosophila pseudoobscura pseudoobscura]
          Length = 745

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 22/188 (11%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++ 
Sbjct: 310 DVKGCDEAKQELKEVVEFLKNPDKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVAG 364

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                       F +A  +  ++         V                +      +D  
Sbjct: 365 EAKVP------FFHAAGPEFDEVL--------VGQGARRVRDLFKAAKARAPCVIFIDE- 409

Query: 198 IIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
            ID+ G    NS+L       + ++L  +D    ++ + VL AT  ++ L Q  +     
Sbjct: 410 -IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRF 468

Query: 257 GTTGLIMT 264
               ++ T
Sbjct: 469 DVEVVVST 476


>gi|253989674|ref|YP_003041030.1| arsenical pump-driving ATPase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781124|emb|CAQ84286.1| arsenical pump-driving ATPase [Photorhabdus asymbiotica]
          Length = 583

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 17/113 (15%)

Query: 43  DGVREELE----DLL---IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
             + EEL     D+L   I + +G+   ++++         +D+S  + +          
Sbjct: 262 QNMPEELRSLPKDMLYLQILNMVGIDALKQLLSN-----KVQDLSAIKAVKP-----KTF 311

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           L  +S         +  +I+++G  GVGKTT+   ++ K+++ GL V L   D
Sbjct: 312 LPTISTLVKEIALQKHGLIMLMGKGGVGKTTIAASIAVKLAEQGLDVHLTTSD 364


>gi|238026067|ref|YP_002910298.1| ClpA/B type protease [Burkholderia glumae BGR1]
 gi|237875261|gb|ACR27594.1| ClpA/B type protease [Burkholderia glumae BGR1]
          Length = 889

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 25/194 (12%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +     +   L  +   +D      L  V++ +      L  P     +    V L VG 
Sbjct: 578 IETVMNLKALLGARVIGQD----HALDAVAQRVRTATAGLEDP-----NKPRGVFLFVGP 628

Query: 120 NGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVCSEIGSD 177
           +GVGKT T +  L+  +     K++      ++ A ++  LK            S  G  
Sbjct: 629 SGVGKTETALA-LADVLYGGERKMVTINMSEYQEAHSVSGLK-----------GSPPGYV 676

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH--SVLQ 235
                    +  +     V+++D   + H + + M        V+   +       + L 
Sbjct: 677 GYGEGGVLTEAVRRNPYSVVLLDEIEKAHPDVLEMFFQVFDKGVMDDAEGREIDFRNTLI 736

Query: 236 VLDATTGQNALRQV 249
           +L +  G +A+ Q 
Sbjct: 737 ILTSNVGSSAVMQA 750


>gi|195170272|ref|XP_002025937.1| GL10197 [Drosophila persimilis]
 gi|194110801|gb|EDW32844.1| GL10197 [Drosophila persimilis]
          Length = 744

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 22/188 (11%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++ 
Sbjct: 309 DVKGCDEAKQELKEVVEFLKNPDKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVAG 363

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                       F +A  +  ++         V                +      +D  
Sbjct: 364 EAKVP------FFHAAGPEFDEVL--------VGQGARRVRDLFKAAKARAPCVIFIDE- 408

Query: 198 IIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
            ID+ G    NS+L       + ++L  +D    ++ + VL AT  ++ L Q  +     
Sbjct: 409 -IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRF 467

Query: 257 GTTGLIMT 264
               ++ T
Sbjct: 468 DVEVVVST 475


>gi|134045909|ref|YP_001097395.1| cobyrinic acid a,c-diamide synthase [Methanococcus maripaludis C5]
 gi|132663534|gb|ABO35180.1| Cobyrinic acid a,c-diamide synthase [Methanococcus maripaludis C5]
          Length = 289

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF- 150
            KM+   +     + S   H I ++ G  GVGK+TV   L+  +   G KV +  GD   
Sbjct: 22  KKMMEQQNAQIRNNMSKIKHKIAVMSGKGGVGKSTVTVNLAATLKMMGYKVGVLDGDIHG 81

Query: 151 ----RSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
               +   + Q++  AD      V +  G    ++
Sbjct: 82  PNIPQMLGVGQIQPIADENGIYPVSTPQGIKTMSI 116


>gi|124802033|ref|XP_001347342.1| regulator of nonsense transcripts, putative [Plasmodium falciparum
           3D7]
 gi|23494920|gb|AAN35255.1|AE014829_55 regulator of nonsense transcripts, putative [Plasmodium falciparum
           3D7]
          Length = 1554

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 55/152 (36%), Gaps = 13/152 (8%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL--KIWADRTSADFVCS 172
           L+ G  G GKT     L   +    +  +L    +    A+DQL  +I         +CS
Sbjct: 805 LIQGPPGTGKTLTCATLVYHLVKMNMGKVLVTAPSN--VAVDQLSVRIHRSGLKVVRLCS 862

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM----IRVLKRLDPH 228
           +      ++A   +   Q K   +L  D A  L+    L   +G++     R LK+L   
Sbjct: 863 KSRESVPSIAEYLYLHNQMK---LLKTDIAEELNKLLELKEEVGELSQKDERRLKKLILF 919

Query: 229 APHSVLQVLD--ATTGQNALRQVEMFHAVAGT 258
           A H +L   D    T   A+ +          
Sbjct: 920 AEHEILIEADVICCTCVGAMDKRLKKFRFRQV 951


>gi|307322300|ref|ZP_07601664.1| AAA ATPase [Sinorhizobium meliloti AK83]
 gi|306892043|gb|EFN22865.1| AAA ATPase [Sinorhizobium meliloti AK83]
          Length = 237

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
              +  V G  G GKTT +  ++ + +  G +V+L   D  R    +  K    + +   
Sbjct: 2   PKFISAVSGKGGAGKTTAVILIAGEYALQGKRVLLIDADG-RQNLQEWWKRCEAKDNLPD 60

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
               I +   A   +  +  +A   DV++ID+ G+  
Sbjct: 61  NIELITAARQATVQQLLEN-EANGFDVVLIDSPGQDT 96


>gi|213982991|ref|NP_001135656.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Xenopus
           (Silurana) tropicalis]
 gi|197246334|gb|AAI68556.1| Unknown (protein for MGC:184830) [Xenopus (Silurana) tropicalis]
          Length = 489

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           MP  K     F++ P VI++VG+   GKT +  KL++ ++ +G+   +     +R  A+ 
Sbjct: 1   MPFRKVGGPQFANSPTVIVMVGLPARGKTYISKKLTRYLNWSGVPTKVFNVGEYRREAVK 60

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                      DF  S+         + A       K
Sbjct: 61  DFSSH------DFFRSDNKEAMKIRRHCALAALADVK 91


>gi|149922606|ref|ZP_01911035.1| ClpA/B family protein [Plesiocystis pacifica SIR-1]
 gi|149816562|gb|EDM76058.1| ClpA/B family protein [Plesiocystis pacifica SIR-1]
          Length = 1221

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 11/147 (7%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           L+R D G+  A ++VE    +   +  ++ R        + + L  +        +    
Sbjct: 505 LLREDRGLEFA-RVVEYFGARVIGQRAAIDR--------VAETLCTVKAGLQ-PAAKPLA 554

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-SAAIDQLKIWADRTSADFVC 171
             L VG  GVGKT V   L++ +  +  ++       +    A D+L    DR       
Sbjct: 555 TFLFVGPTGVGKTEVAKTLARFLFGSPERMTRFDMSEYMDPLAADRLIRGTDREDGVLTR 614

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLI 198
                    L  +  ++A     D+L+
Sbjct: 615 RVRQQPFCVLLLDEVEKAHPAVFDLLL 641


>gi|116309721|emb|CAH66766.1| OSIGBa0115M15.4 [Oryza sativa Indica Group]
          Length = 577

 Score = 41.0 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 36/186 (19%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVI 128
             ++        + + +  E + +++  L    N+    +  P  +L+VG  G GKT   
Sbjct: 281 RPRKQRVGFDDVQGVDEAKEELVEVVSCLHGSLNYKKLGAKLPRGVLLVGPPGTGKT--- 337

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L++ ++                A I    + A     +       +    L  EA + 
Sbjct: 338 -LLARAVAGE--------------AGIPFFSVSASEF-VEVFVGRGAARVRDLFKEAQEA 381

Query: 189 AQAKKVDVLIID-------TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A +    ++ ID       + GR  N+         + ++L  +D       + V+ AT 
Sbjct: 382 APS----IIFIDELDAVGGSRGRSFNDER----DQTLNQLLTEMDGFDSDMKVIVMAATN 433

Query: 242 GQNALR 247
              AL 
Sbjct: 434 RPKALD 439


>gi|194755252|ref|XP_001959906.1| GF11804 [Drosophila ananassae]
 gi|190621204|gb|EDV36728.1| GF11804 [Drosophila ananassae]
          Length = 5485

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 62   VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            V++KI++ +   +   D+   R +  ++ L  K L    +P           +L+VG  G
Sbjct: 1382 VSRKILDAIRNFKLRADIVWTRNMTRMAVLTAKAL-EFDEP-----------VLLVGPTG 1429

Query: 122  VGKTTVIGKLSK----KMSDAGLKVMLAAGDT 149
             GKTTV   L+     ++      +     D 
Sbjct: 1430 CGKTTVCQLLASIADVRLRILNCHMHTEGADF 1461


>gi|254877338|ref|ZP_05250048.1| ATP-dependent metalloprotease [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843359|gb|EET21773.1| ATP-dependent metalloprotease [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 639

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 142 LGEDEIKVTLEDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 199

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 200 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFDQAKK 242

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 243 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 300

Query: 244 NALRQV 249
           + L + 
Sbjct: 301 DVLDKA 306


>gi|241765122|ref|ZP_04763111.1| LAO/AO transport system ATPase [Acidovorax delafieldii 2AN]
 gi|241365239|gb|EER60079.1| LAO/AO transport system ATPase [Acidovorax delafieldii 2AN]
          Length = 341

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 43/128 (33%), Gaps = 19/128 (14%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-- 148
           L+  +L    K F    S         GV GVGK+T I  L   +   G +V +   D  
Sbjct: 43  LLTALLPHTGKAFRLGIS---------GVPGVGKSTFIEALGLYLIGQGRRVAVLTIDPS 93

Query: 149 -TFRSAAI-------DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            T    +I       + L +                  A    EA    +A   DV+I++
Sbjct: 94  STVSGGSILGDKTRMEHLSVHEKAYIRPSPSGGTLGGVAEKTREAMLVCEAAGYDVVIVE 153

Query: 201 TAGRLHNN 208
           T G   + 
Sbjct: 154 TVGVGQSE 161


>gi|305664594|ref|YP_003860881.1| deoxynucleoside kinase subfamily [Maribacter sp. HTCC2170]
 gi|88708611|gb|EAR00847.1| Deoxynucleoside kinase subfamily, putative [Maribacter sp.
           HTCC2170]
          Length = 204

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 7/66 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG---DTFRSAAIDQLKIWADRTSADFV 170
           I V G  G GKTT+   L+K          +      D F     +Q++ W+      F+
Sbjct: 3   IAVAGNIGAGKTTLTKLLAKHYKWEAHFEDVVDNPYLDDF----YNQMERWSFNLQIYFL 58

Query: 171 CSEIGS 176
                 
Sbjct: 59  NHRYRQ 64


>gi|254374098|ref|ZP_04989580.1| ATP-dependent metallopeptidase HflB [Francisella novicida
           GA99-3548]
 gi|151571818|gb|EDN37472.1| ATP-dependent metallopeptidase HflB [Francisella novicida
           GA99-3548]
          Length = 648

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 152 LGEDEIKVTLDDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 209

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 210 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKK 252

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 253 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 310

Query: 244 NALRQV 249
           + L + 
Sbjct: 311 DVLDRA 316


>gi|283786445|ref|YP_003366310.1| T6SS protein Cts1V [Citrobacter rodentium ICC168]
 gi|282949899|emb|CBG89524.1| T6SS protein Cts1V [Citrobacter rodentium ICC168]
          Length = 900

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 76/240 (31%), Gaps = 42/240 (17%)

Query: 43  DGVREEL--EDLLIRSDIGVAVAQKIVE-------------------ELLTKRYAKDVSV 81
           +    E+  E  L+++++  ++   IV                    EL  +   K +  
Sbjct: 540 EATLSEIRGEKALVQTEVNASIVAAIVADWTGIPVGQVLKDDVSAVMELPQRLAEKVIGQ 599

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAG 139
              L  +S+ I      L+ P       +P  V ++VG +GVGKT T +  ++ ++    
Sbjct: 600 TYALTCLSQSIQTARAGLADP------QKPFGVFMLVGPSGVGKTETALA-IADQLYGGK 652

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             ++      ++ A           T +    S  G           +  + K   V+++
Sbjct: 653 QNLITINMSEYQEA----------HTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVILL 702

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV--LDATTGQNALRQVEMFHAVAG 257
           D   + H +   +         ++  +         V  L +  G + +           
Sbjct: 703 DEVEKAHTDVHELFFQVFDKGSMEDGEGRQIDFRNTVILLTSNAGSDIISSACADPQTMP 762


>gi|156865908|gb|ABU96467.1| plastid division regulator MinD [Nicotiana tabacum]
          Length = 332

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 69/204 (33%), Gaps = 19/204 (9%)

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           +  K +   +   +    IH +L    KP     + R  VI   G  GVGKTT    +  
Sbjct: 29  KTLKPIPTPKPSRNFYPSIHSILQYNRKPQLAGETPRVVVIT-SGKGGVGKTTTTANIGL 87

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            ++  G  V+    D       +   +       ++   E+ +    L     +  +   
Sbjct: 88  SLARLGFSVVAIDCDV---GLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSN 144

Query: 194 VDVLIIDTAGRLHNNSILMAGIG-----KMIRVLKRLDPHAPHSVLQVLDATTGQNA--L 246
            ++L I         S L  G G      ++  LK  D  AP   L ++D   G +A  +
Sbjct: 145 FELLCI-----SKPRSKLPIGFGGKALVWLVDALKARDEGAPD--LIIIDCPAGIDAGFI 197

Query: 247 RQVEMFHAVAGTTGLIMTKM-DGT 269
             +   +     T   +T + D  
Sbjct: 198 TAITPANEAVLVTTPDITSLRDAD 221


>gi|15806526|ref|NP_295237.1| 2-phosphoglycerate kinase [Deinococcus radiodurans R1]
 gi|6459277|gb|AAF11081.1|AE001995_6 2-phosphoglycerate kinase, putative [Deinococcus radiodurans R1]
          Length = 540

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 14/112 (12%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------ 102
           L   L+ + +   VA+K V  +  +              + E +  +L     P      
Sbjct: 239 LVQSLLAAGVAPDVARK-VARVTQRDLRGSDDRLVRRAQIREKVEALLRDEVGPDVSARY 297

Query: 103 ---FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     RP ++L+ GV+G GK+ +  +++ ++        +A+ D+ R
Sbjct: 298 RLLRVIRTPPRPLIVLLGGVSGTGKSLLAAEIAYRL----GISRVASTDSIR 345


>gi|332833548|ref|XP_003312490.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
           isoform 2 [Pan troglodytes]
          Length = 534

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 44  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 96


>gi|332833546|ref|XP_001147864.2| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
           isoform 1 [Pan troglodytes]
          Length = 520

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|328887169|emb|CCA60408.1| hypothetical protein SVEN_7122 [Streptomyces venezuelae ATCC 10712]
          Length = 1802

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 93   HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             ++L  L++         P V ++ G+ GVGKTT+  +++ 
Sbjct: 1112 TELLGELARRLTTPEGSGPAVSVIAGIGGVGKTTLAVQVAH 1152


>gi|297300449|ref|XP_002805592.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
           [Macaca mulatta]
          Length = 534

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 44  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 96


>gi|291410885|ref|XP_002721733.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           3-like [Oryctolagus cuniculus]
          Length = 520

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|291239426|ref|XP_002739624.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 38-like
           [Saccoglossus kowalevskii]
          Length = 1227

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 15/142 (10%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
              + DI+  +  D+      +D     D+     Q+  + +  K  A   S       +
Sbjct: 473 GTKLGDIMGIKETDE------KDTNKEGDVDYKSQQQFADHMKNKTEA--TSDFARDKSL 524

Query: 89  SELIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
            E   + L   +         R  +V+++VG  G GKTT   +L++ + + G       G
Sbjct: 525 REQ-RQYLPIFAVKAKLSSVIRDNNVVVIVGETGSGKTT---QLTQYLHEEGFSKYGMIG 580

Query: 148 DTF--RSAAIDQLKIWADRTSA 167
            T   R AA+   K  ++    
Sbjct: 581 CTQPRRVAAMSVAKRVSEEMDV 602


>gi|281347516|gb|EFB23100.1| hypothetical protein PANDA_009136 [Ailuropoda melanoleuca]
          Length = 482

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 7   KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 59


>gi|221045028|dbj|BAH14191.1| unnamed protein product [Homo sapiens]
          Length = 534

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 44  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 96


>gi|194227188|ref|XP_001499956.2| PREDICTED: similar to
           6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
           (6PF-2-K/Fru-2,6-P2ASE brain/placenta-type isozyme)
           (iPFK-2) (Renal carcinoma antigen NY-REN-56) [Equus
           caballus]
          Length = 520

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|168699124|ref|ZP_02731401.1| thermosensitive gluconokinase [Gemmata obscuriglobus UQM 2246]
          Length = 182

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 10/123 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VI+++GV+G GKTTV  +L+  +           GD +        +  A       +  
Sbjct: 2   VIVLMGVSGSGKTTVGKQLAADLGWK-----FVEGDDYHPP-----ENVAKMAGGTPLTD 51

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                      +    A A   ++++  +A +      L       +R +      A   
Sbjct: 52  ADRRPWLKALRQRIDAACATDENIVVACSALKHEYRDYLERDDPACVRYVYLHGSEALFR 111

Query: 233 VLQ 235
              
Sbjct: 112 ERL 114


>gi|295293213|ref|NP_001171225.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 isoform 3
           [Mus musculus]
 gi|154867087|gb|ABS88614.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 splice
           variant 3 [Mus musculus]
          Length = 514

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|154867081|gb|ABS88611.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 splice
           variant [Rattus norvegicus]
          Length = 462

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|295293207|ref|NP_001171223.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 isoform 1
           [Mus musculus]
 gi|154867083|gb|ABS88612.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 splice
           variant 1 [Mus musculus]
          Length = 462

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|295293215|ref|NP_001171227.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 isoform 5
           [Mus musculus]
 gi|154867091|gb|ABS88616.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 splice
           variant 5 [Mus musculus]
          Length = 543

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|295293209|ref|NP_001171224.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 isoform 2
           [Mus musculus]
 gi|154867085|gb|ABS88613.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 splice
           variant 2 [Mus musculus]
          Length = 555

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|55662077|emb|CAH73609.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Homo
           sapiens]
          Length = 513

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|149020994|gb|EDL78601.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, isoform
           CRA_a [Rattus norvegicus]
          Length = 511

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|148676066|gb|EDL08013.1| mCG9572, isoform CRA_b [Mus musculus]
          Length = 512

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 22  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 74


>gi|148676067|gb|EDL08014.1| mCG9572, isoform CRA_c [Mus musculus]
          Length = 511

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|148676065|gb|EDL08012.1| mCG9572, isoform CRA_a [Mus musculus]
          Length = 614

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 118 KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 170


>gi|123235643|emb|CAM24007.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Mus
           musculus]
          Length = 513

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|123235644|emb|CAM24008.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Mus
           musculus]
          Length = 542

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|123235645|emb|CAM24009.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Mus
           musculus]
          Length = 535

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|90084417|dbj|BAE91050.1| unnamed protein product [Macaca fascicularis]
          Length = 616

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|118150790|ref|NP_001071305.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Bos taurus]
 gi|117306221|gb|AAI26524.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Bos taurus]
 gi|296481515|gb|DAA23630.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Bos taurus]
          Length = 514

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|109088145|ref|XP_001107535.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
           isoform 2 [Macaca mulatta]
          Length = 520

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|109088143|ref|XP_001107476.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
           isoform 1 [Macaca mulatta]
          Length = 616

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|55662073|emb|CAH73605.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Homo
           sapiens]
 gi|55664635|emb|CAH72162.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Homo
           sapiens]
          Length = 526

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|295293217|ref|NP_001171228.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 isoform 7
           [Mus musculus]
 gi|30851481|gb|AAH52400.1| Pfkfb3 protein [Mus musculus]
 gi|34785372|gb|AAH57320.1| Pfkfb3 protein [Mus musculus]
 gi|123235642|emb|CAM24006.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Mus
           musculus]
          Length = 526

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|206558240|sp|Q5R9C1|F263_PONAB RecName: Full=6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           3; Short=6PF-2-K/Fru-2,6-P2ase 3; Short=PFK/FBPase 3;
           AltName: Full=6PF-2-K/Fru-2,6-P2ase brain/placenta-type
           isozyme; Includes: RecName:
           Full=6-phosphofructo-2-kinase; Includes: RecName:
           Full=Fructose-2,6-bisphosphatase
 gi|55662074|emb|CAH73606.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Homo
           sapiens]
 gi|55664636|emb|CAH72163.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Homo
           sapiens]
          Length = 514

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|26346068|dbj|BAC36685.1| unnamed protein product [Mus musculus]
          Length = 502

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 12  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 64


>gi|87298847|ref|NP_573495.2| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 isoform 6
           [Mus musculus]
 gi|123235641|emb|CAM24005.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Mus
           musculus]
          Length = 520

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|61354683|gb|AAX41041.1| 6-phosphofructo-2-kinase/fructose-26-biphosphatase 3 [synthetic
           construct]
          Length = 521

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|73949164|ref|XP_544267.2| PREDICTED: similar to
           6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
           (6PF-2-K/Fru-2,6-P2ASE brain-type isozyme) (RB2K) [Canis
           familiaris]
          Length = 559

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 43  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 95


>gi|3676497|gb|AAC62000.1| inducible 6-phosphofructo-2-kinase/fructose 2,6-bisphosphatase
           [Homo sapiens]
          Length = 514

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|2827312|gb|AAB99795.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [Homo sapiens]
          Length = 520

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|9930618|gb|AAG02118.1|AF294617_1 inducible 6-phosphofructo-2-kinase [Mus musculus]
          Length = 520

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|295293211|ref|NP_001171226.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 isoform 4
           [Mus musculus]
 gi|74185640|dbj|BAE32709.1| unnamed protein product [Mus musculus]
 gi|154867089|gb|ABS88615.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 splice
           variant 4 [Mus musculus]
          Length = 549

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|16923988|ref|NP_476476.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Rattus
           norvegicus]
 gi|12643332|sp|O35552|F263_RAT RecName: Full=6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           3; Short=6PF-2-K/Fru-2,6-P2ase 3; Short=PFK/FBPase 3;
           AltName: Full=6PF-2-K/Fru-2,6-P2ase brain-type isozyme;
           AltName: Full=RB2K; Includes: RecName:
           Full=6-phosphofructo-2-kinase; Includes: RecName:
           Full=Fructose-2,6-bisphosphatase
 gi|2317652|dbj|BAA21749.1| fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Rattus
           norvegicus]
 gi|149020997|gb|EDL78604.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, isoform
           CRA_d [Rattus norvegicus]
          Length = 555

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|4758900|ref|NP_004557.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 isoform 1
           [Homo sapiens]
 gi|3023733|sp|Q16875|F263_HUMAN RecName: Full=6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           3; Short=6PF-2-K/Fru-2,6-P2ase 3; Short=PFK/FBPase 3;
           AltName: Full=6PF-2-K/Fru-2,6-P2ase brain/placenta-type
           isozyme; AltName: Full=Renal carcinoma antigen
           NY-REN-56; AltName: Full=iPFK-2; Includes: RecName:
           Full=6-phosphofructo-2-kinase; Includes: RecName:
           Full=Fructose-2,6-bisphosphatase
 gi|83754166|pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
           Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
 gi|151566474|pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
 gi|151566475|pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase Of
           Pfkfb
 gi|151567655|pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
           Fructose-2,6-Bisphosphate
 gi|17467090|gb|AAL40083.1|L77662_1 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [Homo sapiens]
 gi|1468916|dbj|BAA08624.1| 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase [Homo
           sapiens]
 gi|4165896|gb|AAD08818.1| ubiquitous 6-phosphofructo-2-kinase/fructose 2,6-bisphosphatase
           [Homo sapiens]
 gi|26251769|gb|AAH40482.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Homo
           sapiens]
 gi|55662075|emb|CAH73607.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Homo
           sapiens]
 gi|55664637|emb|CAH72164.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Homo
           sapiens]
 gi|119606804|gb|EAW86398.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, isoform
           CRA_b [Homo sapiens]
 gi|119606805|gb|EAW86399.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, isoform
           CRA_b [Homo sapiens]
 gi|158255962|dbj|BAF83952.1| unnamed protein product [Homo sapiens]
 gi|313882518|gb|ADR82745.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 (PFKFB3),
           transcript variant 1 [synthetic construct]
 gi|1588325|prf||2208342A fructose 6-phosphate 2-kinase/fructose 2,6-bisphosphatase
          Length = 520

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|2317662|dbj|BAA21754.1| fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Rattus
           norvegicus]
 gi|149021000|gb|EDL78607.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, isoform
           CRA_g [Rattus norvegicus]
          Length = 520

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|2317666|dbj|BAA21756.1| fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Rattus
           norvegicus]
 gi|149020999|gb|EDL78606.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, isoform
           CRA_f [Rattus norvegicus]
          Length = 513

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|2982726|dbj|BAA25289.1| fructose-6-phosphate,2-kinase/fructose-2,6- bisphosphatase [Homo
           sapiens]
          Length = 176

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 4   KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 56


>gi|2317656|dbj|BAA21751.1| fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Rattus
           norvegicus]
 gi|149020996|gb|EDL78603.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, isoform
           CRA_c [Rattus norvegicus]
          Length = 549

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|2317654|dbj|BAA21750.1| fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Rattus
           norvegicus]
 gi|149020998|gb|EDL78605.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, isoform
           CRA_e [Rattus norvegicus]
          Length = 543

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|2317664|dbj|BAA21755.1| fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Rattus
           norvegicus]
 gi|149020995|gb|EDL78602.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, isoform
           CRA_b [Rattus norvegicus]
          Length = 542

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|2317658|dbj|BAA21752.1| fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Rattus
           norvegicus]
 gi|149021001|gb|EDL78608.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, isoform
           CRA_h [Rattus norvegicus]
          Length = 526

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|2317660|dbj|BAA21753.1| fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Rattus
           norvegicus]
 gi|149021002|gb|EDL78609.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, isoform
           CRA_i [Rattus norvegicus]
          Length = 514

 Score = 41.0 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|328867601|gb|EGG15983.1| ARF/SAR superfamily protein [Dictyostelium fasciculatum]
          Length = 580

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 20/120 (16%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + LI  +L P+ K     FS + +  L+ G++GVGKTT++ K ++             G+
Sbjct: 377 NPLIKWVLRPI-KRLPSIFSRKEYKALMYGLDGVGKTTMLYKFAR-------------GE 422

Query: 149 TFRSAAIDQLKI-WADRTSADFVC--SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
             R+       +   +  S DF+C           + +   +  QA    + IID+A R 
Sbjct: 423 NVRTLHTSGYNVEVVEYKSCDFICWDIGYEQAVVPVWHHYLQDTQAI---IFIIDSADRQ 479


>gi|254778989|ref|YP_003057094.1| Cell division protein FtsH; putative signal peptide [Helicobacter
           pylori B38]
 gi|254000900|emb|CAX28836.1| Cell division protein FtsH; putative signal peptide [Helicobacter
           pylori B38]
          Length = 550

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 22/175 (12%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +V E + +++  L  P  +       P  +L++G  GVGKT     ++K ++      
Sbjct: 167 VDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTM----IAKALASEARVP 222

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
                 +    A  Q+ + A       +       A ++ +          +D   ID  
Sbjct: 223 FFYESGS----AFSQIYVGAGAKKVHELFMHAKRHAPSIIF----------IDE--IDAL 266

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           G+             + ++L  +D    +  + V+ AT     + +  +      
Sbjct: 267 GKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFD 321


>gi|271963236|ref|YP_003337432.1| LAO/AO transporter ATPase [Streptosporangium roseum DSM 43021]
 gi|270506411|gb|ACZ84689.1| LAO/AO transport system ATPase [Streptosporangium roseum DSM 43021]
          Length = 322

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 26/162 (16%)

Query: 65  KIVEELLT---KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            +V        +  A+ +S+      +   I  +L           + RP+   V+G+ G
Sbjct: 15  DLVARARDGQPRAVARLISMVENGSPLLREITALLC----------AGRPYRARVIGLTG 64

Query: 122 ---VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVC 171
              VGK+T  G L +   + G KV + A D        A+      ++  A         
Sbjct: 65  SPGVGKSTSTGMLVRAFRERGRKVGVLAVDPSSPFTGGALLGDRVRMQDHATDPGVFIRS 124

Query: 172 SEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSI 210
                    LA+   +A +   A   +V++++T G       
Sbjct: 125 MASRGHLGGLAWATPQALRVLDAAGCEVILVETVGVGQAEVE 166


>gi|167570596|ref|ZP_02363470.1| adenylylsulfate kinase [Burkholderia oklahomensis C6786]
          Length = 203

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V+ + G+ G GKTT    L  ++  +G K ++  GDT R+ 
Sbjct: 14  PVVWMTGLPGAGKTTTANALLNRLLGSGAKAIVLDGDTLRTG 55


>gi|84503621|ref|ZP_01001662.1| parA protein, putative [Oceanicola batsensis HTCC2597]
 gi|84387952|gb|EAQ01003.1| parA protein, putative [Oceanicola batsensis HTCC2597]
          Length = 222

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 13/156 (8%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT++  ++  M   G ++ +   D  R      L+ WA +   D        D   
Sbjct: 13  GAGKTTLLTAIASLMVQDGARIAVIDTDPQR-----HLEAWAKKEQTDLDWLYEEDDEKL 67

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH-------SV 233
           +      +      D + +DTAG     ++       +I +  + +             V
Sbjct: 68  IPTVKALKKADPAYDAIFVDTAGFKSAMAMHAIAAANLILIPSKANEADAKGAKRTFSHV 127

Query: 234 LQVLDATTGQ-NALRQVEMFHAVAGTTGLIMTKMDG 268
             V +    +  AL  +         T  I+  +D 
Sbjct: 128 QSVAETMEKEIPALVVMMDVDTQTNITQAIVDALDA 163


>gi|312877473|ref|ZP_07737435.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311795729|gb|EFR12096.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 1403

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 81/216 (37%), Gaps = 36/216 (16%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRS-DIGVAVA 63
           +++ E++           S S  LKE    I+S +   + V  +L  LL  + +I  ++ 
Sbjct: 250 EISEENVG-------KIKSLSNTLKEMEKFIVSDKN--EKVIPQLRSLLESAKEIAGSLK 300

Query: 64  QKIVEELLTKRYAKDVSVQRVL---------------YDVSELIHKMLMPLSKPFNWDFS 108
           ++  EE+  ++Y +  +                    YD+++   + L  L K       
Sbjct: 301 EQFKEEI-ERKYGRGTADSIPFRQFMAEYMASFPTANYDLAKETIEALDKLEKWLELYKL 359

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWA----- 162
                I++VG  GVGKT  I   +    ++GLK ++  G+ F      +Q++        
Sbjct: 360 MFEKSIMIVGPAGVGKTHTICDAALMRLNSGLKSIVLFGEHFTDGEPWEQIRQILGLPSE 419

Query: 163 ----DRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               D  +A  +  E       +  +A  + +    
Sbjct: 420 WSKDDILTALDIVGESTESPVVIFIDALNETRPYDF 455


>gi|298290664|ref|YP_003692603.1| LAO/AO transporter ATPase [Starkeya novella DSM 506]
 gi|296927175|gb|ADH87984.1| LAO/AO transport system ATPase [Starkeya novella DSM 506]
          Length = 331

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 27/165 (16%)

Query: 64  QKIVEELLTKRYAK--------DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           +++VE +   R A         +           EL+  +L    K      +       
Sbjct: 12  EELVEGVRAGRRATLARAITLVESRKPEHRALAEELVQALLPATGKAIRVGIT------- 64

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAA-IDQLKIWADRTSAD---- 168
             GV GVGK+T I  L   + + G +V + A D  + R+   I   K    R S D    
Sbjct: 65  --GVPGVGKSTTIDALGTHLLERGHRVAVLAVDPSSSRTGGSILGDKTRMARLSMDDRAF 122

Query: 169 FVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
              S        +A    E     +A   DV++++T G   + + 
Sbjct: 123 VRPSPAAGTLGGVAARTRETLLLCEAAGYDVVLVETVGVGQSETA 167


>gi|167563423|ref|ZP_02356339.1| adenylylsulfate kinase [Burkholderia oklahomensis EO147]
          Length = 203

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V+ + G+ G GKTT    L  ++  +G+K ++  GDT R+ 
Sbjct: 14  PVVWMTGLPGAGKTTTANALLNRLLGSGVKAIVLDGDTLRTG 55


>gi|118497264|ref|YP_898314.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           novicida U112]
 gi|194323566|ref|ZP_03057343.1| cell division protein FtsH [Francisella tularensis subsp. novicida
           FTE]
 gi|208779057|ref|ZP_03246403.1| cell division protein FtsH [Francisella novicida FTG]
 gi|118423170|gb|ABK89560.1| ATP-dependent metalloprotease [Francisella novicida U112]
 gi|194322421|gb|EDX19902.1| cell division protein FtsH [Francisella tularensis subsp. novicida
           FTE]
 gi|208744857|gb|EDZ91155.1| cell division protein FtsH [Francisella novicida FTG]
          Length = 648

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 152 LGEDEIKVTLDDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 209

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 210 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKK 252

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 253 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 310

Query: 244 NALRQV 249
           + L + 
Sbjct: 311 DVLDRA 316


>gi|15242354|ref|NP_199338.1| RPS4 (RESISTANT TO P. SYRINGAE 4); receptor [Arabidopsis thaliana]
 gi|5459305|emb|CAB50708.1| disease resistance protein RPS4 [Arabidopsis thaliana]
 gi|10176996|dbj|BAB10246.1| disease resistance protein-like [Arabidopsis thaliana]
 gi|332007838|gb|AED95221.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]
          Length = 1217

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  L +  + D      +I VVG+ G+GKTT++ +L    +  G           R A I
Sbjct: 214 LKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKEL--YKTWQGK--------FSRHALI 263

Query: 156 DQLKIWADRTSADFVC-------SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           DQ+++ +     D +        S++         + + Q   +KV V++ D + R   +
Sbjct: 264 DQIRVKSKHLELDRLPQMLLGELSKLNHPHVDNLKDPYSQLHERKVLVVLDDVSKREQID 323

Query: 209 SILMAGIGKMIR 220
           + L   +  +  
Sbjct: 324 A-LREILDWIKE 334


>gi|255693017|ref|ZP_05416692.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
 gi|260621230|gb|EEX44101.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
          Length = 265

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 110 RPHVILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA---IDQLKIWADR 164
           +P VI+       GVGKTT+    +  +   G+++++   D   S        LK + + 
Sbjct: 3   QPPVIVTFANQKGGVGKTTLCVTFANYLVTKGVRLVIIDCDFQHSIMKCRKTDLKKYGEV 62

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
                V +    D  A+     K     ++DV+++D+ G
Sbjct: 63  QVPYEVWAYEPDDKTAMTSLIEKLHNDPEIDVVLMDSPG 101


>gi|332186350|ref|ZP_08388095.1| putative kinase [Sphingomonas sp. S17]
 gi|332013718|gb|EGI55778.1| putative kinase [Sphingomonas sp. S17]
          Length = 257

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           +++        RP V+ + G  G GK+T+  +L+++        +L+  D +R+ A
Sbjct: 11  VARRLAQRPDGRPLVLGLCGAQGSGKSTIAARLARRF---PRSAILSLDDLYRTRA 63


>gi|213961974|ref|ZP_03390239.1| ATP-binding protein, Mrp/Nbp35 family [Capnocytophaga sputigena
           Capno]
 gi|213955327|gb|EEB66644.1| ATP-binding protein, Mrp/Nbp35 family [Capnocytophaga sputigena
           Capno]
          Length = 373

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 29/134 (21%)

Query: 44  GVREELEDLLIRS------DIGVAVAQKIV---EELLTKRYAKDVSVQRVLYDVSELIHK 94
            V E L    I +       +     Q IV   +E++      + S+Q       E++  
Sbjct: 7   DVLEALRK--ITAPGEGKNMVDSGAVQNIVVFGDEVVVDVVINNPSLQAKKRTEVEIMKA 64

Query: 95  MLMPLSK------------PFNWDFSHRP-----HVILVV-GVNGVGKTTVIGKLSKKMS 136
           +   + +            P   +   +P     +VI V  G  GVGK+TV   L+  ++
Sbjct: 65  IHGEVHEKAKVVVNVKVIAPEVPEIKGKPIPGIQNVIAVASGKGGVGKSTVTANLAAALA 124

Query: 137 DAGLKVMLAAGDTF 150
             G KV +   D +
Sbjct: 125 KMGFKVGVLDADVY 138


>gi|208434232|ref|YP_002265898.1| cell division protein [Helicobacter pylori G27]
 gi|208432161|gb|ACI27032.1| cell division protein [Helicobacter pylori G27]
          Length = 527

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 22/175 (12%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +V E + +++  L  P  +       P  +L++G  GVGKT     ++K ++      
Sbjct: 144 VDEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLIGPPGVGKTM----IAKALASEARVP 199

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
                 +    A  Q+ + A       +       A ++ +          +D   ID  
Sbjct: 200 FFYESGS----AFSQIYVGAGAKKVHELFMHAKRHAPSIIF----------IDE--IDAL 243

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           G+             + ++L  +D    +  + V+ AT     + +  +      
Sbjct: 244 GKARGGHRSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFD 298


>gi|254457852|ref|ZP_05071279.1| atpase ec atp-dependent zn protease [Campylobacterales bacterium GD
           1]
 gi|207085245|gb|EDZ62530.1| atpase ec atp-dependent zn protease [Campylobacterales bacterium GD
           1]
          Length = 547

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 67/185 (36%), Gaps = 25/185 (13%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGK 124
           VE + +     D+     + DV   + +++  + KP  +    +  P  +L+VG  GVGK
Sbjct: 139 VEAIKSDVKFSDIGG---ISDVKMELEEIIDFMKKPARYKSFGARMPRGVLLVGPPGVGK 195

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++                A+  Q+ +         +     +++ ++ + 
Sbjct: 196 TM----IAKAVAHEAGVPFFYQSG----ASFVQIYVGMGAKRVHELFHAAKNNSPSIIF- 246

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                    +D   ID  G+  +          + ++L  +D     S + V+ AT   +
Sbjct: 247 ---------IDE--IDAVGKKRDGQRNDEREATLNQLLTEMDGFESQSGIIVIAATNKID 295

Query: 245 ALRQV 249
            L   
Sbjct: 296 VLDSA 300


>gi|329939125|ref|ZP_08288499.1| gluconokinase [Streptomyces griseoaurantiacus M045]
 gi|329302010|gb|EGG45903.1| gluconokinase [Streptomyces griseoaurantiacus M045]
          Length = 172

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           H PHV++V+GV+G GKTT+   L+ ++      V  A GD F   A
Sbjct: 2   HTPHVVVVMGVSGTGKTTIGPLLAARL-----GVPYAEGDDFHPQA 42


>gi|288917127|ref|ZP_06411497.1| adenylylsulfate kinase [Frankia sp. EUN1f]
 gi|288351496|gb|EFC85703.1| adenylylsulfate kinase [Frankia sp. EUN1f]
          Length = 613

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
             S R   IL  G++G GK+T+ G L+ ++ + G +V L  G+  R+
Sbjct: 423 PRSRRGLTILFTGLSGAGKSTLAGLLACRLLERGRRVTLLDGEIVRT 469


>gi|229490620|ref|ZP_04384458.1| hypothetical protein RHOER0001_6093 [Rhodococcus erythropolis
           SK121]
 gi|229322440|gb|EEN88223.1| hypothetical protein RHOER0001_6093 [Rhodococcus erythropolis
           SK121]
          Length = 568

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 75/237 (31%), Gaps = 34/237 (14%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----------IHKMLMPLSKPFNWDFSH- 109
            AQ +   LL KR  +   V      +  L             + L+ L++  N      
Sbjct: 256 TAQDLSAALLVKRPVRPAPVGGWRKALYTLSGRSVNLGNGAKEQHLVELTRQINQPLQGC 315

Query: 110 -RPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFR-----------SAAID 156
            +  V+ + G  GVGKTT    L     S  G +V+    +  R            A + 
Sbjct: 316 YKVAVLSLKG--GVGKTTTTATLGSMFGSIRGDRVVAVDANPDRGTLSQKIPLETPATVR 373

Query: 157 QL----KIWADRTSADFVCSEIGSDAAALAYE---AFKQAQAKKVDVLIIDTAGRLHNNS 209
            L          +      S+       LA +   A  +A +       +D   + ++  
Sbjct: 374 NLLRDENSIEKYSDVRGYTSQNRHRLEVLASDSDPAVSEAFSGGDYTRTVDMLEKFYSIV 433

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
           +   G G M   ++ +   A   ++    +  G  +      +    G + L+ T +
Sbjct: 434 LTDCGTGLMHSAMQAILEGADSLIVVSSGSVDGARSASATLDWLDAHGYSRLVATSV 490


>gi|226305161|ref|YP_002765119.1| hypothetical protein RER_16720 [Rhodococcus erythropolis PR4]
 gi|226184276|dbj|BAH32380.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 377

 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 75/237 (31%), Gaps = 34/237 (14%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----------IHKMLMPLSKPFNWDFSH- 109
            AQ +   LL KR  +   V      +  L             + L+ L++  N      
Sbjct: 65  TAQDLSAALLVKRPVRPAPVGGWRKALYTLSGRSVNLGNGAKEQHLVELTRQINQPLQGC 124

Query: 110 -RPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFR-----------SAAID 156
            +  V+ + G  GVGKTT    L     S  G +V+    +  R            A + 
Sbjct: 125 YKVAVLSLKG--GVGKTTTTATLGSMFGSIRGDRVVAVDANPDRGTLSQKIPLETPATVR 182

Query: 157 QL----KIWADRTSADFVCSEIGSDAAALAYE---AFKQAQAKKVDVLIIDTAGRLHNNS 209
            L          +      S+       LA +   A  +A +       +D   + ++  
Sbjct: 183 NLLRDENSIEKYSDVRGYTSQNRHRLEVLASDSDPAVSEAFSGGDYTRTVDMLEKFYSIV 242

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
           +   G G M   ++ +   A   ++    +  G  +      +    G + L+ T +
Sbjct: 243 LTDCGTGLMHSAMQAILEGADSLIVVSSGSVDGARSASATLDWLDAHGYSRLVATSV 299


>gi|328676753|gb|AEB27623.1| Cell division protein FtsH [Francisella cf. novicida Fx1]
          Length = 637

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 152 LGEDEIKVTLDDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 209

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 210 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKK 252

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 253 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 310

Query: 244 NALRQV 249
           + L + 
Sbjct: 311 DVLDRA 316


>gi|328675799|gb|AEB28474.1| Cell division protein FtsH [Francisella cf. novicida 3523]
          Length = 648

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 152 LGEDEIKVTLDDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 209

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 210 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKK 252

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 253 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 310

Query: 244 NALRQV 249
           + L + 
Sbjct: 311 DVLDRA 316


>gi|147792369|emb|CAN74711.1| hypothetical protein VITISV_009242 [Vitis vinifera]
          Length = 1354

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            V ++IV  ++ +   + +SV + +  +S  + K+   ++   N     +  V+ + G+ 
Sbjct: 163 EVVKEIVNTIIRRLNHQPLSVGKNIVGISVHLEKLKSLMNTNLN-----KVSVVGICGIG 217

Query: 121 GVGKTTVIGK 130
           G GKTT I K
Sbjct: 218 GAGKTT-IAK 226


>gi|294782373|ref|ZP_06747699.1| chaperone protein ClpB [Fusobacterium sp. 1_1_41FAA]
 gi|294481014|gb|EFG28789.1| chaperone protein ClpB [Fusobacterium sp. 1_1_41FAA]
          Length = 610

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 14/86 (16%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           + + + E ++D              +   L  +   +D    + +  VS +I + +  +S
Sbjct: 276 IKENMWESIDD---------EAVNNLENSLKDRVKGQD----KAIKKVSSVIKRAVTGMS 322

Query: 101 KPFNWDFSHRPHVILV-VGVNGVGKT 125
              +    ++P  IL   G  G GKT
Sbjct: 323 GLQHSSTGNKPKGILFFAGPTGTGKT 348


>gi|187931961|ref|YP_001891946.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712870|gb|ACD31167.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 648

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 152 LGEDEIKVTLDDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 209

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 210 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKK 252

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 253 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 310

Query: 244 NALRQV 249
           + L + 
Sbjct: 311 DVLDRA 316


>gi|158318908|ref|YP_001511416.1| hypothetical protein Franean1_7191 [Frankia sp. EAN1pec]
 gi|158114313|gb|ABW16510.1| conserved hypothetical protein [Frankia sp. EAN1pec]
          Length = 334

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I  VG  G GKTT+   L + ++  G  V+    D
Sbjct: 3   IAFVGKGGSGKTTLSALLCRHLAARGHPVLAIDAD 37


>gi|154685295|ref|YP_001420456.1| YfiC [Bacillus amyloliquefaciens FZB42]
 gi|154351146|gb|ABS73225.1| YfiC [Bacillus amyloliquefaciens FZB42]
          Length = 605

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I  VG  G GKTTV   +++       K+++   D
Sbjct: 395 IAFVGPTGAGKTTVTSLIARFYEPNNGKILIDGTD 429


>gi|16077889|ref|NP_388703.1| ABC transporter ATP-binding protein [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308658|ref|ZP_03590505.1| hypothetical protein Bsubs1_04568 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312982|ref|ZP_03594787.1| hypothetical protein BsubsN3_04519 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317908|ref|ZP_03599202.1| hypothetical protein BsubsJ_04463 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322181|ref|ZP_03603475.1| hypothetical protein BsubsS_04559 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321314550|ref|YP_004206837.1| putative ABC transporter ATP-binding protein [Bacillus subtilis
           BSn5]
 gi|1723607|sp|P54719|YFIC_BACSU RecName: Full=Uncharacterized ABC transporter ATP-binding protein
           YfiC
 gi|1486245|dbj|BAA09107.1| unknown [Bacillus subtilis]
 gi|2633146|emb|CAB12651.1| putative ABC transporter (ATP-binding protein) [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|320020824|gb|ADV95810.1| putative ABC transporter (ATP-binding protein) [Bacillus subtilis
           BSn5]
          Length = 604

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I  VG  G GKTTV   L++       K+++   D
Sbjct: 395 IAFVGPTGAGKTTVTNLLARFYEPNDGKILIDGTD 429


>gi|149204645|ref|ZP_01881610.1| ABC branched-chain amino acid transporter, ATPase subunit
           [Roseovarius sp. TM1035]
 gi|149141904|gb|EDM29954.1| ABC branched-chain amino acid transporter, ATPase subunit
           [Roseovarius sp. TM1035]
          Length = 259

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 20/170 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD----------------TFRSAAID 156
           +  ++G NG GKTTV   L+K +     K+ L   D                +F+ +A+ 
Sbjct: 43  IHALIGPNGAGKTTVFNLLTKFLQPTRGKITLLGADITKMKPDRVARMGLVRSFQISAVF 102

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
                 +            +    L   A  +  A+  DVLI D   R + ++       
Sbjct: 103 PHLTVLENVRVALQRPNNLATQFWLPMSALDRLNAR-ADVLIDDLGLREYRDTRASDLSY 161

Query: 217 KMIRVLKRLDPHAPHSVLQVLD---ATTGQNALRQVEMFHAVAGTTGLIM 263
              RVL+     A    + +LD   A  G+  ++ V            ++
Sbjct: 162 GRKRVLEIATTLALDPEVLLLDEPMAGMGREDVKLVANIIRDVAQHRAVL 211


>gi|148271244|ref|YP_001220805.1| partitioning protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829174|emb|CAN00083.1| partitioning protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 210

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 9/124 (7%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           IL+VG    G GK+T+   L+ + +  G  V+L   D  RS+A       A   +    C
Sbjct: 2   ILLVGSQKGGAGKSTIATNLAAEYARQGSDVVLVDADVQRSSARWHADREAAGLTPAIAC 61

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            E   + +    +        +  V+I+D AG+      +  G+    +++  + P    
Sbjct: 62  IEKLGNISGTLND-----LDSRYGVVIVDVAGKDSKE--MRTGMVVAHKMIVTVRPSQFD 114

Query: 232 SVLQ 235
               
Sbjct: 115 LDTL 118


>gi|20808395|ref|NP_623566.1| ATP-dependent Zn protease [Thermoanaerobacter tengcongensis MB4]
 gi|254479371|ref|ZP_05092706.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|20517008|gb|AAM25170.1| ATP-dependent Zn proteases [Thermoanaerobacter tengcongensis MB4]
 gi|214034684|gb|EEB75423.1| ATP-dependent metallopeptidase HflB subfamily protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 510

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 66/188 (35%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYA---KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +I EE+  K+     KDV+    + +  ++I   +    K +N   +  P  IL  G  G
Sbjct: 69  EINEEVTKKKGNITFKDVAGLDEVIEELKVIIDFMTNTEK-YNKMGAKIPKGILFYGPPG 127

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKT     L+  ++       ++A  +                  +       S   AL
Sbjct: 128 TGKT----LLATALAGETNSTFISASGS---------------EFVEKYVGVGASRIRAL 168

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
             +A K A +    +  ID  G   N          + ++L  +D    +  + V+ AT 
Sbjct: 169 FAKAKKNAPSIIF-IDEIDAVGTKRNTDNNSEKDQTLNQLLVEMDGFNSNEGIIVIGATN 227

Query: 242 GQNALRQV 249
             + L + 
Sbjct: 228 RIDMLDEA 235


>gi|95928871|ref|ZP_01311617.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135216|gb|EAT16869.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Desulfuromonas acetoxidans DSM 684]
          Length = 341

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
              P V+   G +G GKTT++ K+ + +S+ G K+     D
Sbjct: 167 KKSPPVVSFAGYSGSGKTTLVTKVIELLSNKGYKIGAIKHD 207


>gi|324999731|ref|ZP_08120843.1| lysine arginine ornithine transport system kinase [Pseudonocardia
           sp. P1]
          Length = 319

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 28/212 (13%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           EL+ +    +      L  + E   + L  +S      ++ R HV+ + G  GVGK+T  
Sbjct: 9   ELVERARRGEQLAVARLISMVENAGRQLREVSAALT-PYTGRAHVVGLTGSPGVGKSTST 67

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKI----WADRTSADFVCSEIGSDAAAL 181
             L  ++     KV + A D        A+   ++     A                  L
Sbjct: 68  SALVTELRARDRKVGVLAVDPSSPFSGGALLGDRVRMGEHAGDDGVFIRSMATRGHLGGL 127

Query: 182 AY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           ++   +A +   A   DV++++T G   +                     A  S + +L 
Sbjct: 128 SWATPQALRVLDAAGCDVVLVETVGVGQSEVE---------------IVGAADSTVVLLA 172

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
              G + ++  +      G    ++ K D   
Sbjct: 173 PGMG-DGIQAAKAGILEIG-DVFVVNKADRDG 202


>gi|295395855|ref|ZP_06806043.1| ATP-dependent helicase HrpA [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971390|gb|EFG47277.1| ATP-dependent helicase HrpA [Brevibacterium mcbrellneri ATCC 49030]
          Length = 1313

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 17/107 (15%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD--- 168
            VI+V G  G GKTT + KL  ++   G+  M+      R AA       A+ T  +   
Sbjct: 61  QVIVVAGETGSGKTTQLPKLCMELGY-GINGMIGHTQPRRIAARSVATRIAEETGVELGE 119

Query: 169 -------FVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTA 202
                  F      S    +  +    A+ +        DV+IID A
Sbjct: 120 GVGYQVRFTAHTDDSTRVKVMTDGILLAELQHDKYLRAYDVIIIDEA 166


>gi|222639912|gb|EEE68044.1| hypothetical protein OsJ_26041 [Oryza sativa Japonica Group]
          Length = 1222

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 19/117 (16%)

Query: 26  LKLKEGITDIISSRR----LDDGVREELEDLLIRSDI--GVAVAQKIVEELLTK------ 73
            +L + +  +    +    + D + +E+E  L+  D   G      IV  +  +      
Sbjct: 101 RRLGKQVKKLFKKTKHRVTIADAI-QEMEKKLLEIDARHGRYPVDNIV--IPARPTPIDP 157

Query: 74  ---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTT 126
                 K  +    + +  + + KML    +  N + S+R   I+ VVG+ G+GKTT
Sbjct: 158 HILNIEKMANNLVGIDEPRDELIKMLSQHERDNNLNTSNRKTKIVYVVGMGGLGKTT 214


>gi|254513310|ref|ZP_05125375.1| putative MobA/MobL protein [Rhodobacteraceae bacterium KLH11]
 gi|221532314|gb|EEE35310.1| putative MobA/MobL protein [Rhodobacteraceae bacterium KLH11]
          Length = 3238

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 3/135 (2%)

Query: 71   LTKRYAKDVSVQRVLYDVSELIHKM-LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +K + + +        +S  I    L P  +        +P + LV G +G GKT V G
Sbjct: 935  RSKAFGQSLHGIGEEALLSAEIQTSDLTPEQEAAFRAAIDQPGLSLVSGPSGSGKTRVAG 994

Query: 130  KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
             L++    AG+K + A   T   A +D+L+   +  +      E       +A       
Sbjct: 995  ALARVYRAAGVKEVNAIAPTS--AGVDRLRRTGEDGAMSIRQFEERVADGRIALMPRSVI 1052

Query: 190  QAKKVDVLIIDTAGR 204
                  ++  +TA R
Sbjct: 1053 VLDDAGLVGAETADR 1067


>gi|147768838|emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
          Length = 3804

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 33/133 (24%)

Query: 6    VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR-----SDIGV 60
            ++SES+ +   L +G  S S  LK+ + D+++          E E  L+      SDIGV
Sbjct: 2154 ISSESIXYGLNLLQGIQSESKSLKKSLKDVVTEN--------EFEKKLLSDVIPPSDIGV 2205

Query: 61   AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFSHRPHVILVV 117
                             D+     + D  + +  +++PL +P        +     IL+ 
Sbjct: 2206 --------------TFDDIGALENVKDTLKEL--VMLPLQRPELFCKGQLTKPCKGILLF 2249

Query: 118  GVNGVGKTTVIGK 130
            G  G GK T++ K
Sbjct: 2250 GPPGTGK-TMLAK 2261


>gi|224457497|ref|ZP_03665970.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159986|gb|ADA79377.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 648

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 152 LGEDEIKVTLDDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 209

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 210 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKK 252

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 253 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 310

Query: 244 NALRQV 249
           + L + 
Sbjct: 311 DVLDRA 316


>gi|254369652|ref|ZP_04985662.1| hypothetical protein FTAG_00969 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122611|gb|EDO66740.1| hypothetical protein FTAG_00969 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 648

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 152 LGEDEIKVTLDDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 209

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 210 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKK 252

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 253 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 310

Query: 244 NALRQV 249
           + L + 
Sbjct: 311 DVLDRA 316


>gi|254372637|ref|ZP_04988126.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570364|gb|EDN36018.1| ATP-dependent metalloprotease [Francisella novicida GA99-3549]
          Length = 638

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 142 LGEDEIKVTLDDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 199

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 200 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKK 242

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 243 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 300

Query: 244 NALRQV 249
           + L + 
Sbjct: 301 DVLDRA 306


>gi|134302352|ref|YP_001122321.1| ATP-dependent metallopeptidase HflB [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050129|gb|ABO47200.1| ATP-dependent metallopeptidase HflB [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 648

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 152 LGEDEIKVTLDDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 209

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 210 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKK 252

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 253 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 310

Query: 244 NALRQV 249
           + L + 
Sbjct: 311 DVLDRA 316


>gi|134294838|ref|YP_001118573.1| adenylylsulfate kinase [Burkholderia vietnamiensis G4]
 gi|134137995|gb|ABO53738.1| adenylylsulfate kinase [Burkholderia vietnamiensis G4]
          Length = 195

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             + RP V+ + GV+G GK+T+   L  ++   G +  L  GDT R  
Sbjct: 22  GANPRPFVVWLTGVSGAGKSTLASLLKLQLDALGHRTYLLDGDTLREG 69


>gi|301109265|ref|XP_002903713.1| ATP-dependent RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262096716|gb|EEY54768.1| ATP-dependent RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 1435

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           + V   ++  E+LL  R AKD   Q+    +     K+     +           V+LV 
Sbjct: 601 VDVEAVRRASEKLLQSRRAKD--SQQNFQQMLAARAKLPAGKEETQVIKCVQNNQVVLVC 658

Query: 118 GVNGVGKTTVI 128
           G  G GKTT I
Sbjct: 659 GATGCGKTTQI 669


>gi|197301430|ref|ZP_03166510.1| hypothetical protein RUMLAC_00161 [Ruminococcus lactaris ATCC
           29176]
 gi|197299468|gb|EDY33988.1| hypothetical protein RUMLAC_00161 [Ruminococcus lactaris ATCC
           29176]
          Length = 315

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 50/171 (29%), Gaps = 24/171 (14%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+ G  G GKTT I K +  +   GL + +   D     A++   +       D    E+
Sbjct: 6   LITGFLGSGKTTFIKKYATYLMRKGLNIGILENDH---GAVNVDMMLLQELRGDQCELEM 62

Query: 175 GSDAAALAYEA------FKQAQAKKVDVLIIDTAGRLHNNS----------ILMAGIGKM 218
            S                        D ++++ +G    +                IG +
Sbjct: 63  ISGGCDAETHRRRFRTKLISMGMCGYDRVLVEPSGIYDIDEFFDVLRDEPLDHWYEIGNV 122

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
           I V+            + L A+   +A   +              TK D T
Sbjct: 123 IAVVNAGLEETLSDQAEFLLASEVADAGSIILSRSQEVPV-----TKQDAT 168


>gi|89256753|ref|YP_514115.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica LVS]
 gi|89256757|ref|YP_514119.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica LVS]
 gi|156502918|ref|YP_001428983.1| ATP-dependent metallopeptidase family protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010897|ref|ZP_02275828.1| cell division protein FtsH [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254368050|ref|ZP_04984070.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica 257]
 gi|290953313|ref|ZP_06557934.1| ATP-dependent metallopeptidase family protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313457|ref|ZP_06804057.1| ATP-dependent metallopeptidase family protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144584|emb|CAJ79903.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica LVS]
 gi|89144588|emb|CAJ79907.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253860|gb|EBA52954.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           holarctica 257]
 gi|156253521|gb|ABU62027.1| ATP-dependent metallopeptidase family protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 648

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 152 LGEDEIKVTLDDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 209

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 210 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKK 252

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 253 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 310

Query: 244 NALRQV 249
           + L + 
Sbjct: 311 DVLDRA 316


>gi|14149116|dbj|BAB55655.1| fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase
           [Bruguiera gymnorhiza]
          Length = 745

 Score = 40.6 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 36/205 (17%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           I++VG++  GKT    KL++ +   G          +R     +LK  A++  ADF    
Sbjct: 346 IVLVGLSARGKTFTAAKLTRYLRWLGHNTKHFNVGKYR-----RLKHGANQC-ADFFRGD 399

Query: 173 -----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG----------- 216
                E  ++ AALA +       +   V I D          ++  +            
Sbjct: 400 NLXGVEARNEVAALAMDDMIAWMQEGGQVGIFDATNSTRKRRNMLMQMAEGNCKIIFLET 459

Query: 217 ---------KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
                    + IR+  +  P               ++ L   E  +        I   +D
Sbjct: 460 ICNDQRIIERNIRLKIQQSPDYAEEPDFEAGYQDFKSRLENYEKVYEPVEEGSYI-KMID 518

Query: 268 GTARGGGLIPIVVTHK-IP--VYFL 289
             +  GG I +      +P  + F 
Sbjct: 519 MVSGHGGQIQVNNISGYLPGRIVFF 543


>gi|303236847|ref|ZP_07323426.1| phosphoribulokinase/uridine kinase family protein [Prevotella
           disiens FB035-09AN]
 gi|302483015|gb|EFL46031.1| phosphoribulokinase/uridine kinase family protein [Prevotella
           disiens FB035-09AN]
          Length = 553

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +GV       E +          +   L +VSE + +  +               V+L+ 
Sbjct: 243 LGVRTVGDFNEAVKK-------GLSNDLINVSEALQEKKISQMAE-TIAHKEGVKVVLIA 294

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           G +  GKTT   +LS ++   G+K +  + D +
Sbjct: 295 GPSSSGKTTFCKRLSVQLLTCGIKPVQISLDDY 327


>gi|167919768|ref|ZP_02506859.1| adenylylsulfate kinase [Burkholderia pseudomallei BCC215]
          Length = 206

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            VI + G+ G GKTT    L++++ + G K ++  GD  R+ 
Sbjct: 14  PVIWMTGLPGAGKTTTANALAERLLEDGAKAIVLDGDALRTG 55


>gi|302536981|ref|ZP_07289323.1| LAO/AO transport system ATPase [Streptomyces sp. C]
 gi|302445876|gb|EFL17692.1| LAO/AO transport system ATPase [Streptomyces sp. C]
          Length = 320

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 73/226 (32%), Gaps = 35/226 (15%)

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
            + + V     +V +    R      +  ++   S  + +++  L+       +   +V+
Sbjct: 1   MATVDVPT---LVAQAREGRPRAVARLISLVEGASPQLREVMAALA-----PLTGGAYVV 52

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKI----WADRTSA 167
            + G  GVGK+T    L      AG +V + A D        A+   ++     A     
Sbjct: 53  GLTGSPGVGKSTSTSALVSAYRAAGKRVGVLAVDPSSPFSGGALLGDRVRMSDHASDPGV 112

Query: 168 DFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                        LA+   +A +   A   DV++++T G   +                 
Sbjct: 113 YIRSMATRGHLGGLAWAAPQAIRVLDAAGCDVILVETVGVGQSEVE-------------- 158

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +   A  SV+ +       + ++  +      G    ++ K D   
Sbjct: 159 IASQADTSVVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 201


>gi|227529718|ref|ZP_03959767.1| competence protein ComGA [Lactobacillus vaginalis ATCC 49540]
 gi|227350384|gb|EEJ40675.1| competence protein ComGA [Lactobacillus vaginalis ATCC 49540]
          Length = 325

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            A++  V R +Y + ++ +++  P         +    +IL  G  G GKTT + +L+K+
Sbjct: 96  RAQESMVIRFIYPLKDIDYRVNRPEQWEMITKLTRSRGLILFAGPMGSGKTTTMYRLAKE 155

Query: 135 MSDAGLKVMLAAGDTFRS--AAIDQLKI 160
           ++    ++++   D      AA  QL++
Sbjct: 156 LARE--ELVMTIEDPVEIEEAAFLQLQV 181


>gi|29829397|ref|NP_824031.1| lysine arginine ornithine transport system kinase [Streptomyces
           avermitilis MA-4680]
 gi|29606504|dbj|BAC70566.1| putative lysine arginine ornithine transport system kinase
           [Streptomyces avermitilis MA-4680]
          Length = 318

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 69/218 (31%), Gaps = 32/218 (14%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              +V +    R      +  ++   S  + +++  L+       +   +V+ + G  GV
Sbjct: 4   VSSLVAQAREGRPRAVARLISLVEGASPQLREVMEALA-----PLTGNAYVVGLTGSPGV 58

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIG 175
           GK+T    L      AG +V + A D        A+      +   A             
Sbjct: 59  GKSTSTSALVTAYRKAGKRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMATR 118

Query: 176 SDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                LA+   +A +   A   DV++++T G   +                 +   A  S
Sbjct: 119 GHLGGLAWAAPQAIRVLDAAGCDVILVETVGVGQSEVE--------------IASQADTS 164

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           V+ +       + ++  +      G    ++ K D   
Sbjct: 165 VVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 199


>gi|146297202|ref|YP_001180973.1| ABC transporter related [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410778|gb|ABP67782.1| ABC transporter related protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 597

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 15/175 (8%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH--------KMLMPLSKPFNWDFSH 109
           + +A  ++I E L  +   KD S    L  +   I         +   P+ K   +    
Sbjct: 322 VAMASTERIFEILDIQPDVKDSSHAYDLPPIKGEIRFENVSFSYEEEKPVLKDVTFTIKP 381

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
               I +VG  G GKTT+I  L++       ++++   D         LK    +     
Sbjct: 382 GET-IALVGETGAGKTTIISLLARFYDPQRGRILIDGHDIRNVT----LKSLRKQMGIML 436

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +    +  +A           +D +I        +  I+    G    V +R
Sbjct: 437 --QDTFIFSGTVADNIRYAKPDATMDEVIKAAKTVNAHEFIMKMENGYDTEVNER 489


>gi|332653692|ref|ZP_08419436.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16]
 gi|332516778|gb|EGJ46383.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16]
          Length = 643

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 24/179 (13%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            K    DV+      +  + I + L    + F    +  P  +L+VG  G GKT  I K 
Sbjct: 183 KKVTFNDVAGADEEKEELQEIVEFLRDPQR-FTALGARIPKGVLLVGPPGTGKTL-IAK- 239

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
                         AG+    A +  L I       +       S    L  +A K+A A
Sbjct: 240 ------------AVAGE----AGVHFLSISGSDF-VELYVGVGASRVRDLFDQAKKEAPA 282

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
               +  ID  GR     +          + ++L  +D  A +  + V+ AT  Q+ L 
Sbjct: 283 IVF-IDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFASNEGVIVMAATNRQDILD 340


>gi|14520467|ref|NP_125942.1| lysine arginine ornithine transport system kinase [Pyrococcus
           abyssi GE5]
 gi|18203541|sp|Q9V225|Y249_PYRAB RecName: Full=Putative GTPase PYRAB02490
 gi|5457682|emb|CAB49173.1| Lysine arginine ornithine transport system kinase [Pyrococcus
           abyssi GE5]
          Length = 324

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 11/152 (7%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++EL+ +    D      L  + E   +    + +   +  +   +++ + G  G GK+T
Sbjct: 2   IDELIERMKKGDRRATARLITLVENDEEKAREIIRKI-YPLTGNAYIVGITGPPGAGKST 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSEIGSDAA 179
           ++ KL K+    GL V + A D    F   A+      ++  +                 
Sbjct: 61  LLDKLIKEARKEGLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLG 120

Query: 180 ALA---YEAFKQAQAKKVDVLIIDTAGRLHNN 208
            LA    +A K   A   DV+ ++T G     
Sbjct: 121 GLAKATNDAIKVLDAYGCDVIFVETVGVGQVE 152


>gi|119716361|ref|YP_923326.1| LAO/AO transport system ATPase [Nocardioides sp. JS614]
 gi|119537022|gb|ABL81639.1| LAO/AO transport system ATPase [Nocardioides sp. JS614]
          Length = 327

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 10/107 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---FRSAAIDQLKIWADRTSAD 168
           HVI + G  G GK+T++ +L+    D GL V + A D    +   AI   +I  +  S D
Sbjct: 59  HVIGITGPAGSGKSTLVARLAANYRDDGLTVAVLAVDPSSGYSGGAILGDRIRMNALSGD 118

Query: 169 ---FVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
              F+ S          +   ++A K   A + D ++++T G   + 
Sbjct: 119 TGIFIRSLATRGATGGLSRAVFDAIKVFDAARFDRVLVETVGVGQDE 165


>gi|57505825|ref|ZP_00371750.1| ATP-binding protein (mpr) [Campylobacter upsaliensis RM3195]
 gi|57015855|gb|EAL52644.1| ATP-binding protein (mpr) [Campylobacter upsaliensis RM3195]
          Length = 365

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 9/142 (6%)

Query: 13  WIRKLTKGFASTS-LKLKEGITD--IISSRRLDDGVREELEDLLIRSDIGV-AVAQKIVE 68
            I K+ +  A       ++ I     +   R+DD  +  ++  ++ ++  +    +K ++
Sbjct: 1   MIEKIKERLARVKYPNFEKDIMSYGFVKEIRVDDE-KAYIKLEIVAANPNIADTLRKDID 59

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           E+L     KD+     L  +   I +         N     +  V++  G  GVGK+T  
Sbjct: 60  EVLKDLNLKDIK----LEILQPQIEEEKSNSKSGKNVAPQVKNFVMVSSGKGGVGKSTTA 115

Query: 129 GKLSKKMSDAGLKVMLAAGDTF 150
             L+  M+  GLKV +   D +
Sbjct: 116 LNLAISMAKMGLKVGIVDADIY 137


>gi|56708367|ref|YP_170263.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670837|ref|YP_667394.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254370990|ref|ZP_04986993.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875190|ref|ZP_05247900.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604859|emb|CAG45943.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321170|emb|CAL09326.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569231|gb|EDN34885.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841189|gb|EET19625.1| ATP-dependent metalloprotease [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 638

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 142 LGEDEIKVTLDDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 199

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 200 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKK 242

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 243 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 300

Query: 244 NALRQV 249
           + L + 
Sbjct: 301 DVLDRA 306


>gi|25288036|pir||C88700 protein K02B2.1 [imported] - Caenorhabditis elegans
          Length = 450

 Score = 40.6 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR---S 152
           L    +    +    P+VI++VG+   GKT +  KL + +   G    +     +R   +
Sbjct: 7   LETTKRKVAHNQVRVPNVIVMVGLPARGKTYISKKLCRYLKWTGFTTKVFNVGEYRRSDA 66

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            A D   I     S     S   +DA  +  E+ ++A     D L   T G    ++
Sbjct: 67  NAAD--AIHGANAS---FFSPNNADALKVRAESARRAMEDMADYLNSGTGGVAIFDA 118


>gi|113866224|ref|YP_724713.1| G3E family GTPase [Ralstonia eutropha H16]
 gi|113525000|emb|CAJ91345.1| Putative GTPase (G3E family) [Ralstonia eutropha H16]
          Length = 422

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 18/147 (12%)

Query: 108 SHRPHVILVVGVNGVGKTTVIG-KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           + R  V ++ G  G GKTT++   L+     AG ++ +         A+  L    + T 
Sbjct: 2   ADRLPVTVLSGFPGAGKTTLLNHLLAH---SAGRRLAVLVCGPQHGQALAPLPPGCEATL 58

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                        AL  EA + A   + D L+I+  G    +  L    G +        
Sbjct: 59  LPV--------GDALLGEAARLAAEGRFDSLLIEADG---LDEPLAIAEGFLFEAEHGAG 107

Query: 227 PHA---PHSVLQVLDATTGQNALRQVE 250
           P A   P +++ V+DA T    L + E
Sbjct: 108 PDAAVQPDTLVTVIDAATFLRDLNEAE 134


>gi|113205372|gb|ABI34366.1| Resistance complex protein I2C-2, putative [Solanum demissum]
          Length = 856

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 17/126 (13%)

Query: 38  SRRLDD--GVREELEDLLIRSDIG-VAVAQKI-VEELLTKRYAKDVSVQRVLYDVSELIH 93
             +L+D     EELE       IG + + + +   +  T+  +  V  +  +      + 
Sbjct: 214 KEKLEDTIETLEELEKQ-----IGRLDLTKYLDSGKQETRESSTSVVDESDILGRQNEVE 268

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG------KLSKKMSDAGLKVMLAAG 147
            ++  L           P VI VVG+ GVGKTT+        K+           +    
Sbjct: 269 GLMDRLLSE--DGNGKYPTVIPVVGMGGVGKTTLAKAVYNDEKVKNHFGLKAWICVSEPY 326

Query: 148 DTFRSA 153
           D  R  
Sbjct: 327 DILRIT 332


>gi|326802370|ref|YP_004320189.1| hypothetical protein Sph21_5024 [Sphingobacterium sp. 21]
 gi|326553134|gb|ADZ81519.1| hypothetical protein Sph21_5024 [Sphingobacterium sp. 21]
          Length = 180

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            +  H P V+L+ G++G GKTT   KL       G      + D
Sbjct: 13  LNCKHEPKVVLMCGLSGSGKTTFAKKL------EGYNFHRLSID 50


>gi|320013148|gb|ADW07996.1| putative ATP/GTP-binding protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 228

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 10/104 (9%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            +  +S   +      P  IL+ G+ G GKTT    L++    AG+  +    + FR   
Sbjct: 40  EISRISASLSGQLRSAPRAILMAGMPGAGKTT----LARAFEQAGMVRLCPDEEMFR--- 92

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
             +   +                   +A E  ++  A   DV++
Sbjct: 93  --RYGHYGRDFPRGQFRVREAPVLKEIALE-LQEHLAAGRDVVV 133


>gi|258517414|ref|YP_003193636.1| Sigma 54 interacting domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257781119|gb|ACV65013.1| Sigma 54 interacting domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 650

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 26/140 (18%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K+  +   ++ +      S   +L+  I + ++ R+  +   +E++  +I+ + G   AQ
Sbjct: 97  KIEDKISDYLAR-----RSLEDELERKIKEKMNERQ--EDYLQEIKMQVIKENTGPENAQ 149

Query: 65  KIVE-ELLTKRYAKDVSVQRV----------LYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
            + +  +L K   K +S   +          +      +  +L  L+ PF       P  
Sbjct: 150 TLKKLAVLEKLEHKKLSSTAMEFLRPTCFGEIIGQERAVKALLSKLASPF-------PQH 202

Query: 114 ILVVGVNGVGKTTVIGKLSK 133
           IL+ G  GVGKTT   +L+ 
Sbjct: 203 ILLYGPPGVGKTT-AARLAL 221


>gi|258405359|ref|YP_003198101.1| Cobyrinic acid ac-diamide synthase [Desulfohalobium retbaense DSM
           5692]
 gi|257797586|gb|ACV68523.1| Cobyrinic acid ac-diamide synthase [Desulfohalobium retbaense DSM
           5692]
          Length = 258

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           I + G  GVGKTT    L+  ++  G  V +   DT
Sbjct: 3   IAIAGKGGVGKTTFTAWLADYLARNGANVWMVDADT 38


>gi|162449536|ref|YP_001611903.1| hypothetical protein sce_missed_out [Sorangium cellulosum 'So ce
           56']
 gi|161160118|emb|CAN91423.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 161

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           ++LV+GV+G GKTTV  +L++++        L   D F  AA
Sbjct: 2   IVLVMGVSGAGKTTVGARLARELGWE-----LVDADDFHPAA 38


>gi|123443661|ref|YP_001007632.1| arsenical pump-driving ATPase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090622|emb|CAL13493.1| arsenical pump-driving ATPase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 583

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ ++++ G  V L   D    AA     +     +      +
Sbjct: 330 IMLMGKGGVGKTTMAAAIAVRLAEMGFDVHLTTSD---PAAHLSTTLNGSLNNLQVSRID 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    +      +D AG+      L +   + I V + 
Sbjct: 387 PHEETERYRQHVLETKGKE------LDEAGKRLLEEDLRSPCTEEIAVFQA 431


>gi|237813093|ref|YP_002897544.1| adenylyl-sulfate kinase [Burkholderia pseudomallei MSHR346]
 gi|237505307|gb|ACQ97625.1| adenylyl-sulfate kinase [Burkholderia pseudomallei MSHR346]
          Length = 206

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            VI + G+ G GKTT    L++++ + G K ++  GD  R+ 
Sbjct: 14  PVIWMTGLPGAGKTTTANALAERLLEDGAKAIVLDGDALRTG 55


>gi|114329518|gb|ABI64281.1| CC-NBS-LRR Pi36 [Oryza sativa Indica Group]
          Length = 1056

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 19/117 (16%)

Query: 26  LKLKEGITDIISSRR----LDDGVREELEDLLIRSDI--GVAVAQKIVEELLTK------ 73
            +L + +  +    +    + D + +E+E  L+  D   G      IV  +  +      
Sbjct: 101 RRLGKQVKKLFKKTKHRVTIADAI-QEMEKKLLEIDARHGRYPVDNIV--IPARPTPIDP 157

Query: 74  ---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTT 126
                 K  +    + +  + + KML    +  N + S+R   I+ VVG+ G+GKTT
Sbjct: 158 RILNIEKMANNLVGIDEPRDELIKMLSQHERDNNLNTSNRKTKIVYVVGMGGLGKTT 214


>gi|73541416|ref|YP_295936.1| AAA ATPase, central region:Clp, N terminal [Ralstonia eutropha
           JMP134]
 gi|72118829|gb|AAZ61092.1| AAA ATPase, central region:Clp, N terminal [Ralstonia eutropha
           JMP134]
          Length = 898

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 67/196 (34%), Gaps = 25/196 (12%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +     + ++L  +   +D ++  +   +      +          D      V L+VG 
Sbjct: 585 LHTVLHLHDKLAERVVGQDEALDAIARRIRTFRADL---------DDPGKPVGVFLLVGP 635

Query: 120 NGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVCSEIGSD 177
           +GVGKT T    L+  +      ++      F+ A ++  LK            +  G  
Sbjct: 636 SGVGKTETACA-LADLLYGGERNMITVNMSEFQEAHSVSGLK-----------GAPPGYV 683

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD--PHAPHSVLQ 235
                    +  + +   V+++D   + H + + +        +++  +  P    + + 
Sbjct: 684 GYGRGGVLTEAVRRRPYSVVLLDEMEKAHPDVLELFFQVFDKGMMEDGEGVPIDFRNTVI 743

Query: 236 VLDATTGQNALRQVEM 251
           +L +   Q+ + +   
Sbjct: 744 LLTSNAAQDVITEASQ 759


>gi|5823587|emb|CAB53785.1| disease resistance protein RPS4-Ler [Arabidopsis thaliana]
          Length = 1217

 Score = 40.6 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 18/132 (13%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  L +  + D      +I VVG+ G+GKTT++ +L    +  G           R A I
Sbjct: 214 LKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKEL--YKTWQGK--------FSRHALI 263

Query: 156 DQLKIWADRTSADFVC-------SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           DQ+++ +     D +        S++ +       + + Q   +KV V++ D + R   +
Sbjct: 264 DQIRVKSKHLELDRLPQMLLGELSKLNNPHVDNLKDPYSQLHERKVLVVLDDVSKREQID 323

Query: 209 SILMAGIGKMIR 220
           + L   +  +  
Sbjct: 324 A-LREILDWIKE 334


>gi|237769815|dbj|BAH59426.1| putative disease resistance protein [Arabidopsis thaliana]
          Length = 1217

 Score = 40.6 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 18/132 (13%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  L +  + D      +I VVG+ G+GKTT++ +L    +  G           R A I
Sbjct: 214 LKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKEL--YKTWQGK--------FSRHALI 263

Query: 156 DQLKIWADRTSADFVC-------SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           DQ+++ +     D +        S++ +       + + Q   +KV V++ D + R   +
Sbjct: 264 DQIRVKSKHLELDRLPQMLLGELSKLNNPHVDNLKDPYSQLHERKVLVVLDDVSKREQID 323

Query: 209 SILMAGIGKMIR 220
           + L   +  +  
Sbjct: 324 A-LREILDWIKE 334


>gi|167751288|ref|ZP_02423415.1| hypothetical protein EUBSIR_02274 [Eubacterium siraeum DSM 15702]
 gi|167655795|gb|EDR99924.1| hypothetical protein EUBSIR_02274 [Eubacterium siraeum DSM 15702]
          Length = 329

 Score = 40.6 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
             +P V L+ G +G GKTT   +++  +   G+K ++ + D +
Sbjct: 70  KQKPLV-LLSGPSGSGKTTTAYRIADALVKKGIKAIVISMDDY 111


>gi|84687362|ref|ZP_01015241.1| DNA-binding protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84664659|gb|EAQ11144.1| DNA-binding protein [Rhodobacterales bacterium HTCC2654]
          Length = 239

 Score = 40.6 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 63/179 (35%), Gaps = 26/179 (14%)

Query: 121 GVGKTTVI-GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT+    +S  ++  G +VML   D+ R       +  A   S+  +CS      A
Sbjct: 17  GSGKTTLSRALISAAIAA-GRRVMLIDTDSTRVLGAWHARAEAGGLSSPLLCSATVESVA 75

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +  +  +   A   D + IDTAG         A     I VL      A H V  V+ +
Sbjct: 76  GVEDQIDQVYMAGTADFIFIDTAGVG-------AEWSDGIAVL------ADHIVTPVMLS 122

Query: 240 TTGQNALRQVEMFHAV----------AGTTGLIMTKMD-GTARGGGLIPIVVTHKIPVY 287
           T+  +   Q   +                  +++  +D  T R    +      + PV 
Sbjct: 123 TSDFDVGAQTADWFEKLKSRVDDPSSLPRHHVVLNMVDPKTTRADAALIEEALTRFPVI 181


>gi|291531654|emb|CBK97239.1| Uridine kinase [Eubacterium siraeum 70/3]
          Length = 329

 Score = 40.6 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
             +P V L+ G +G GKTT   +++  +   G+K ++ + D +
Sbjct: 70  KQKPLV-LLSGPSGSGKTTTAYRIADALVKKGIKAIVISMDDY 111


>gi|312261114|dbj|BAJ33562.1| CC-NBS-LRR type resistance protein [Capsicum annuum]
          Length = 1315

 Score = 40.6 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 38/165 (23%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRS--DIG 59
           SNQ+V+   L+        F     KL+E I  +       + +++++ DL ++   D+G
Sbjct: 104 SNQQVSDLKLNLSDDY---FLDIKEKLEETIETL-------EDLQKQIGDLGLQKHLDLG 153

Query: 60  VAVAQK-----IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
             +  +     +V+E  +K   + +  +R       LI ++L   S   N        V+
Sbjct: 154 KKLETRTPSTSLVDE--SKILGRMIEKER-------LIDRLLSSDSNGENL------TVV 198

Query: 115 LVVGVNGVGKTTVI------GKLSKKMSDAGLKVMLAAGDTFRSA 153
            +VG+ GVGKTT+        K+           +  A D+FR  
Sbjct: 199 PIVGMGGVGKTTLAKIVYNDKKVKDHFDLKAWFCVSEAYDSFRIT 243


>gi|312261112|dbj|BAJ33561.1| CC-NBS-LRR type resistance protein [Capsicum annuum]
          Length = 1315

 Score = 40.6 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 38/165 (23%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRS--DIG 59
           SNQ+V+   L+        F     KL+E I  +       + +++++ DL ++   D+G
Sbjct: 104 SNQQVSDLKLNLSDDY---FLDIKEKLEETIETL-------EDLQKQIGDLGLQKHLDLG 153

Query: 60  VAVAQK-----IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
             +  +     +V+E  +K   + +  +R       LI ++L   S   N        V+
Sbjct: 154 KKLETRTPSTSLVDE--SKILGRMIEKER-------LIDRLLSSDSNGENL------TVV 198

Query: 115 LVVGVNGVGKTTVI------GKLSKKMSDAGLKVMLAAGDTFRSA 153
            +VG+ GVGKTT+        K+           +  A D+FR  
Sbjct: 199 PIVGMGGVGKTTLAKIVYNDKKVKDHFDLKAWFCVSEAYDSFRIT 243


>gi|142425|gb|AAA22186.1| nodQ [Azospirillum brasilense]
          Length = 620

 Score = 40.6 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +V+    +     + ++  L   + L  + L   +         RP V+   G++G GK+
Sbjct: 402 LVDRFSNRTVGAGM-IRHPLRRAANLHRQELAVSTVERAALKRQRPAVLWFTGLSGSGKS 460

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           T+  ++ +++   G   M+  GD  R  
Sbjct: 461 TIANRVERRLHTLGHHTMMLDGDNVRLG 488


>gi|71413697|ref|XP_808978.1| XPA-interacting protein [Trypanosoma cruzi strain CL Brener]
 gi|70873287|gb|EAN87127.1| XPA-interacting protein, putative [Trypanosoma cruzi]
          Length = 292

 Score = 40.6 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            HRP V+LVVG+ G GKTT++ ++     +   +      D
Sbjct: 4   DHRPLVVLVVGMAGTGKTTLVHRMQHYTMEQNKRAYFINLD 44


>gi|294679635|gb|ADF29628.1| Pi36 [Oryza sativa Japonica Group]
          Length = 1056

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 19/117 (16%)

Query: 26  LKLKEGITDIISSRR----LDDGVREELEDLLIRSDI--GVAVAQKIVEELLTK------ 73
            +L + +  +    +    + D + +E+E  L+  D   G      IV  +  +      
Sbjct: 101 RRLGKQVKKLFKKTKHRVTIADAI-QEMEKKLLEIDARHGRYPVDNIV--IPARPTPIDP 157

Query: 74  ---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTT 126
                 K  +    + +  + + KML    +  N + S+R   I+ VVG+ G+GKTT
Sbjct: 158 HILNIEKMANNLVGIDEPRDELIKMLSQHERDNNLNTSNRKTKIVYVVGMGGLGKTT 214


>gi|294679624|gb|ADF29623.1| Pi36 [Oryza sativa Japonica Group]
          Length = 1056

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 19/117 (16%)

Query: 26  LKLKEGITDIISSRR----LDDGVREELEDLLIRSDI--GVAVAQKIVEELLTK------ 73
            +L + +  +    +    + D + +E+E  L+  D   G      IV  +  +      
Sbjct: 101 RRLGKQVKKLFKKTKHRVTIADAI-QEMEKKLLEIDARHGRYPVDNIV--IPARPTPIDP 157

Query: 74  ---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTT 126
                 K  +    + +  + + KML    +  N + S+R   I+ VVG+ G+GKTT
Sbjct: 158 HILNIEKMANNLVGIDEPRDELIKMLSQHERDNNLNTSNRKTKIVYVVGMGGLGKTT 214


>gi|268609207|ref|ZP_06142934.1| cobalamin synthesis protein, putative [Ruminococcus flavefaciens
           FD-1]
          Length = 326

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+ G+ G GKTT I K +  +   G ++ +   D     A++   +       D    E+
Sbjct: 6   LITGILGSGKTTFIKKYASYLIKKGERIAILENDF---GAVNVDMMILQDLKCDNCTVEM 62

Query: 175 GSDAAALAYEA------FKQAQAKKVDVLIIDTAGRLHNNS 209
                                  +  D +I++ +G    + 
Sbjct: 63  IMGGGDYDCHRRRFKTQLISLGMQNYDRVIVEPSGIFDMDE 103


>gi|209526435|ref|ZP_03274962.1| GTP-binding protein HSR1-related [Arthrospira maxima CS-328]
 gi|209493070|gb|EDZ93398.1| GTP-binding protein HSR1-related [Arthrospira maxima CS-328]
          Length = 513

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 12/172 (6%)

Query: 63  AQKIVEELLTKR---YAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            ++  ++  +K    Y K + S  ++   + E+I K+ +   +      +  P  + V+G
Sbjct: 343 VKEFTDQQRSKMDKSYEKKIDSDNQIFKKLLEIISKVDLEFIRRLLEQETKLPPKVAVIG 402

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGKTT I      + +A LK       T ++   +         +   +     S+ 
Sbjct: 403 KAGVGKTTTI----NNLFNAELKTSPTTVGTTQAQTKEFTLSTGGTLTVIDMPGYGRSEK 458

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
               YE   +      D++++     L  +   +A   +MI+ +K+     P
Sbjct: 459 EDQEYEKIYKDLIPSCDLILLI----LQADIKGIADDIEMIKTIKKWLQDCP 506


>gi|54041625|sp|P28604|NODQ_AZOBR RecName: Full=Bifunctional enzyme nodQ; AltName: Full=Nodulation
           protein Q; Includes: RecName: Full=Sulfate
           adenylyltransferase subunit 1; AltName:
           Full=ATP-sulfurylase large subunit; AltName:
           Full=Sulfate adenylate transferase; Short=SAT; Includes:
           RecName: Full=Adenylyl-sulfate kinase; AltName: Full=APS
           kinase; AltName: Full=ATP adenosine-5'-phosphosulfate
           3'-phosphotransferase
 gi|46241618|gb|AAS83003.1| sulfate adenylate transferase [Azospirillum brasilense]
          Length = 620

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +V+    +     + ++  L   + L  + L   +         RP V+   G++G GK+
Sbjct: 402 LVDRFSNRTVGAGM-IRHPLRRAANLHRQELAVSTVERAALKRQRPAVLWFTGLSGSGKS 460

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           T+  ++ +++   G   M+  GD  R  
Sbjct: 461 TIANRVERRLHTLGHHTMMLDGDNVRLG 488


>gi|308446052|ref|XP_003087081.1| hypothetical protein CRE_30647 [Caenorhabditis remanei]
 gi|308262810|gb|EFP06763.1| hypothetical protein CRE_30647 [Caenorhabditis remanei]
          Length = 890

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 59  GVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           G+ V + + +E+       ++  K V  Q   Y + +L+  +    SK    D +    V
Sbjct: 550 GIPVGKMVNDEIKQILSLEEKLEKRVMGQD--YALHQLVQGI--KTSKARLEDPNKPQGV 605

Query: 114 ILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            ++VG +GVGKT T +  L+ ++      ++              +  + +  +   +  
Sbjct: 606 FMLVGPSGVGKTETALA-LANELYGGESHLITIN-----------MSEYQEAHTVSSLKG 653

Query: 173 EIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                          +A  +    V+++D   + H++   +         L+  +     
Sbjct: 654 APPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVID 713

Query: 232 --SVLQVLDATTGQNALRQV 249
             +   +L + TG NA+ Q 
Sbjct: 714 FKNTTILLTSNTGSNAIMQA 733


>gi|195426391|ref|XP_002061318.1| GK20855 [Drosophila willistoni]
 gi|194157403|gb|EDW72304.1| GK20855 [Drosophila willistoni]
          Length = 753

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 22/188 (11%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++ 
Sbjct: 318 DVKGCDEAKQELKEVVEFLKNPDKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVAG 372

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                       F +A  +  ++         V                +      +D  
Sbjct: 373 EANVP------FFHAAGPEFDEVL--------VGQGARRVRDLFKAAKARAPCVIFIDE- 417

Query: 198 IIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
            ID+ G    NS+L       + ++L  +D    ++ + VL AT  ++ L Q  +     
Sbjct: 418 -IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRF 476

Query: 257 GTTGLIMT 264
               ++ T
Sbjct: 477 DVEVMVST 484


>gi|68164559|gb|AAY87288.1| predicted flagellar biosynthetic protein [uncultured bacterium
           BAC17H8]
          Length = 388

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           +LVVG +G GKTT+  K++    + G+   +   
Sbjct: 200 VLVVGSSGTGKTTLATKIAAYFKEHGISERMTLA 233


>gi|5823585|emb|CAB53784.1| disease resistance protein rps4-RLD [Arabidopsis thaliana]
          Length = 1217

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 18/132 (13%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  L +  + D      +I VVG+ G+GKTT++ +L    +  G           R A I
Sbjct: 214 LKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKEL--YKTWQGK--------FSRHALI 263

Query: 156 DQLKIWADRTSADFVC-------SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           DQ+++ +     D +        S++ +       + + Q   +KV V++ D + R   +
Sbjct: 264 DQIRVKSKHLELDRLPQMLLGELSKLNNPHVDNLKDPYSQLHERKVLVVLDDVSKREQID 323

Query: 209 SILMAGIGKMIR 220
           + L   +  +  
Sbjct: 324 A-LREILDWIKE 334


>gi|226363636|ref|YP_002781418.1| anion-transporting ATPase [Rhodococcus opacus B4]
 gi|226242125|dbj|BAH52473.1| putative anion-transporting ATPase [Rhodococcus opacus B4]
          Length = 379

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           +++  G  GVGKTT    L+ + ++ G KV++   D  R  A
Sbjct: 29  IVVCCGAGGVGKTTTAASLALRAAEQGRKVVVLTIDPARRLA 70


>gi|225851377|ref|YP_002731611.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Persephonella marina EX-H1]
 gi|225646524|gb|ACO04710.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Persephonella marina EX-H1]
          Length = 165

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            VI +VG +  GKTT I KL   +   G K+     D
Sbjct: 4   PVICIVGAHNSGKTTFITKLISLLKSEGYKITAVKHD 40


>gi|225573067|ref|ZP_03781822.1| hypothetical protein RUMHYD_01258 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039573|gb|EEG49819.1| hypothetical protein RUMHYD_01258 [Blautia hydrogenotrophica DSM
           10507]
          Length = 432

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 21/162 (12%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           L + ++ SDI +   Q+I   L      +D         +S  ++     +  P + D  
Sbjct: 53  LYEDMLTSDINLMTPQEIHNFLDEYVIGQD----EAKKALSVAVYNHYKRVMAPKSLDVE 108

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +   IL++G  G GKT +   L+K +      V  A  D                T A 
Sbjct: 109 LQKSNILMLGPTGSGKTLLAQTLAKLL-----NVPFAIAD------------ATTLTEAG 151

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           +V  ++ +    +   A    +  +  ++ ID   ++   S 
Sbjct: 152 YVGEDVENILLKIIQAADYDIERAQYGIIYIDEIDKITRKSE 193


>gi|198429261|ref|XP_002129767.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38
           [Ciona intestinalis]
          Length = 1167

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 26/159 (16%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK---- 73
            K            + +I+  ++ DD    ++ +     D     +Q+  + +  K    
Sbjct: 404 KKSQRKDWELAGTKLGNIMGIKKEDDKENPDMSE-----DSDFKSSQRFSQHMGKKSEAS 458

Query: 74  ---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                +K ++ QR    +  +  ++L         +     ++++++G  G GKTT   +
Sbjct: 459 SDFAKSKTLTQQRQFLPIYAVKEELL---------NIVRDNNIVVIIGETGSGKTT---Q 506

Query: 131 LSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTSA 167
           L++ + + G       G T   R AA+   K  ++    
Sbjct: 507 LAQYLHEDGYSKYGMIGCTQPRRVAAMSVAKRVSEEMGV 545


>gi|115315152|ref|YP_763875.1| M41 family endopeptidase FtsH/HflB [Francisella tularensis subsp.
           holarctica OSU18]
 gi|115130051|gb|ABI83238.1| M41 family endopeptidase FtsH/HflB [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 648

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 27/186 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTV 127
           L        +     + +  E + +++  L +P  ++      P  +L+VG  G GKT  
Sbjct: 152 LGEDEIKVTLDDVAGVDEAKEEVAEIVDFLREPKKYEKIGGKIPKGVLMVGPPGTGKT-- 209

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    +  +A K
Sbjct: 210 --LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKK 252

Query: 188 QA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A     +D   ID  GR   + +          + ++L  +D  A +  + V+ AT   
Sbjct: 253 KAPCLVFIDE--IDAVGRHRGSGMGGGNDEREQTLNQMLVEMDGFADNEGVIVIAATNRP 310

Query: 244 NALRQV 249
           + L + 
Sbjct: 311 DVLDRA 316


>gi|37573036|dbj|BAC98548.1| putative MLA1 [Oryza sativa Japonica Group]
 gi|50726278|dbj|BAD33854.1| putative MLA1 [Oryza sativa Japonica Group]
          Length = 988

 Score = 40.6 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 19/117 (16%)

Query: 26  LKLKEGITDIISSRR----LDDGVREELEDLLIRSDI--GVAVAQKIVEELLTK------ 73
            +L + +  +    +    + D + +E+E  L+  D   G      IV  +  +      
Sbjct: 101 RRLGKQVKKLFKKTKHRVTIADAI-QEMEKKLLEIDARHGRYPVDNIV--IPARPTPIDP 157

Query: 74  ---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTT 126
                 K  +    + +  + + KML    +  N + S+R   I+ VVG+ G+GKTT
Sbjct: 158 HILNIEKMANNLVGIDEPRDELIKMLSQHERDNNLNTSNRKTKIVYVVGMGGLGKTT 214


>gi|294679631|gb|ADF29626.1| Pi36 [Oryza rufipogon]
          Length = 1056

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 19/117 (16%)

Query: 26  LKLKEGITDIISSRR----LDDGVREELEDLLIRSDI--GVAVAQKIVEELLTK------ 73
            +L + +  +    +    + D + +E+E  L+  D   G      IV  +  +      
Sbjct: 101 RRLGKQVKKLFKKTKHRVTIADAI-QEMEKKLLEIDARHGRYPVDNIV--IPARPTPIDP 157

Query: 74  ---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTT 126
                 K  +    + +  + + KML    +  N + S+R   I+ VVG+ G+GKTT
Sbjct: 158 RILNIEKMANNLVGIDEPRDELIKMLSQHERDNNLNTSNRKTKIVYVVGMGGLGKTT 214


>gi|294679629|gb|ADF29625.1| Pi36 [Oryza rufipogon]
          Length = 1055

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 19/117 (16%)

Query: 26  LKLKEGITDIISSRR----LDDGVREELEDLLIRSDI--GVAVAQKIVEELLTK------ 73
            +L + +  +    +    + D + +E+E  L+  D   G      IV  +  +      
Sbjct: 101 RRLGKQVKKLFKKTKHRVTIADAI-QEMEKKLLEIDARHGRYPVDNIV--IPARPTPIDP 157

Query: 74  ---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTT 126
                 K  +    + +  + + KML    +  N + S+R   I+ VVG+ G+GKTT
Sbjct: 158 RILNIEKMANNLVGIDEPRDELIKMLSQHERDNNLNTSNRKTKIVYVVGMGGLGKTT 214


>gi|291556792|emb|CBL33909.1| Uridine kinase [Eubacterium siraeum V10Sc8a]
          Length = 329

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
             +P V L+ G +G GKTT   +++  +   G+K ++ + D +
Sbjct: 70  KQKPLV-LLSGPSGSGKTTTAYRIADALVKKGIKAIVISMDDY 111


>gi|255262917|ref|ZP_05342259.1| urease accessory protein UreG [Thalassiobium sp. R2A62]
 gi|255105252|gb|EET47926.1| urease accessory protein UreG [Thalassiobium sp. R2A62]
          Length = 207

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 47/228 (20%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLK 159
           + P  I + G  G GKTT+  +L+K +    + + +   D +         R   + Q +
Sbjct: 4   NGPLRIGIGGPVGAGKTTLTAELAKLLHPT-VSIGVITNDIYTQEDAEALMRMQILPQDR 62

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +    T      +     +  LA  A  + +  +V+V++I++ G       L A      
Sbjct: 63  VIGVETGGCPHTAIREDASINLAAVAEMRGRHPEVEVVLIESGG-----DNLSATFS--- 114

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI- 278
                  P      + V+D   G+   R  +   A+  +  L++ K D     G  + + 
Sbjct: 115 -------PELADLTVYVIDVAAGEEIPR--KGGPAITKSDILVINKTDLAPHVGASLEVM 165

Query: 279 -----VVTHKIPVYFL----GVGEGINDLEPFVAKDFSAVITGCLDYG 317
                 +    P  F     G G           ++ +  + G   + 
Sbjct: 166 ERDARRMRGDKPFVFAALRHGRG----------PREIAERLGGLGGFA 203


>gi|169351620|ref|ZP_02868558.1| hypothetical protein CLOSPI_02400 [Clostridium spiroforme DSM 1552]
 gi|169291842|gb|EDS73975.1| hypothetical protein CLOSPI_02400 [Clostridium spiroforme DSM 1552]
          Length = 593

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 46/160 (28%), Gaps = 16/160 (10%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           H  L  G  G GKTTV   L+K ++  G           ++    Q     D    D   
Sbjct: 39  HAYLFAGPRGTGKTTVAKLLAKALNCTGDNPPCDNCPNCKAITASQ---HPDVIEIDAAS 95

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +    +   L  +        K  V IID          +          L +     P 
Sbjct: 96  NNGVDEVRDLIDKVKYAPINGKYKVYIID---------EVHMMSQGAFNALLKTLEEPPA 146

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMD 267
            ++ +L  T     L  +                I+++++
Sbjct: 147 HIIFILATTEPHKILPTIISRCQRFDFKKVDDQDIVSRLE 186


>gi|78185493|ref|YP_377928.1| MRP protein-like [Synechococcus sp. CC9902]
 gi|78169787|gb|ABB26884.1| MRP protein-like [Synechococcus sp. CC9902]
          Length = 360

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 65/203 (32%), Gaps = 23/203 (11%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G  GVGK+TV   L+  ++  GLKV L   D +   A   L I           S     
Sbjct: 114 GKGGVGKSTVAVNLACALAQQGLKVGLLDADIYGPNAPTMLGIANQTPEVT--GSGDTQR 171

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +               L+ID    +     ++ G   +IR            VL V 
Sbjct: 172 IKPIESCGIAMVSMG----LLIDEHQPVIWRGPMLNG---IIRQFLYQAEWGERDVLVVD 224

Query: 238 DATTGQNA---LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
                 +A   L Q      V   T   +  +   AR G  + +     IPV  LGV   
Sbjct: 225 LPPGTGDAQLSLAQAVPMAGVIIVTTPQLVSL-QDARRG--LAMFRQLGIPV--LGV--- 276

Query: 295 INDLEPFVAKDFSAV---ITGCL 314
           + ++  F+  D       + G  
Sbjct: 277 VENMSAFIPPDMPDRRYALFGSG 299


>gi|57641867|ref|YP_184345.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57160191|dbj|BAD86121.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1]
          Length = 448

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 56/165 (33%), Gaps = 6/165 (3%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           + L+ G  G GKT +   L+  +S +G KV+  A +   +A  D L+      +   V  
Sbjct: 258 ITLIAGPTGSGKTILALNLASNLSKSGKKVLYIAYEESLAALRDTLEKLGLEENFRIVSM 317

Query: 173 EIGSDAAALAYEAFKQA-QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                     Y   K   + +  DVL+ID+   +      M     +  V          
Sbjct: 318 VPEGRTPVEYYALIKDLIEKEGFDVLVIDSLSAM---ESHMDEKEFIKAVRYLQLLTKEK 374

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
            V  VL   TG +  +      +      LI    D   R G  +
Sbjct: 375 GVTFVLTYITG-STYKLATTGFSTL-VDNLIFLTYDVPERVGESL 417


>gi|254513723|ref|ZP_05125786.1| plasmid partitioning protein RepA [Rhodobacteraceae bacterium
           KLH11]
 gi|221531953|gb|EEE35010.1| plasmid partitioning protein RepA [Rhodobacteraceae bacterium
           KLH11]
          Length = 415

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 59/180 (32%), Gaps = 27/180 (15%)

Query: 90  ELIHKMLMPLSKPFNWDFSHR--------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           + + ++L   +K        R          VI   G  G GKTT    L++KM+  G K
Sbjct: 105 QALRELLEAGAKAPGTYLPGRREGDHLQVITVINFKG--GSGKTTTAAHLAQKMALDGYK 162

Query: 142 VMLAAGDTF-RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           V+    D     +A+   +   D      +   I  D      +  ++     +D++   
Sbjct: 163 VLAIDLDPQASLSALHGFQPEFDLLDGGTLYDAIRYDDPVPLQDVIQKTYFTNLDIV--- 219

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
                  N  LM       R L + D +   + +         +AL  VE  + V     
Sbjct: 220 -----PGNLDLMEFEHDTPRALTQRDGNLFFTRI--------GDALSSVEQDYDVVVVDC 266


>gi|325184003|emb|CCA18460.1| premRNAsplicing factor ATPdependent RNA helicase PRP16 putative
           [Albugo laibachii Nc14]
          Length = 1142

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 18/117 (15%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-----HKMLMPLSKPFNWDFSHRPH 112
           +      +    L  ++   + +  R L +  + +      + LM + +           
Sbjct: 417 VSYKAESQFSTHLKKQKAVSEFAKSRTLKEQRQYLPIYQCREELMQVVRE--------NQ 468

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTSA 167
           ++++VG  G GKTT   +L++ + + G       G T   R AA+   +  ++    
Sbjct: 469 IVVIVGETGSGKTT---QLTQYLYEEGYSKYGMIGCTQPRRVAAMSVAQRVSEEMDV 522


>gi|315171675|gb|EFU15692.1| arsenite-activated ATPase [Enterococcus faecalis TX1342]
          Length = 580

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 15/137 (10%)

Query: 67  VEELLT--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           VE L    K Y  +   + V       +  ++  L +           VI  +G  GVGK
Sbjct: 286 VENLRQLLKAYQGEFLTETVAQRTFPRLKDIVNELDQSGK-------KVIFTMGKGGVGK 338

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT+   ++  ++D G KV LA  D    AA  Q  + A+         +   + A    E
Sbjct: 339 TTIAAAIATGLADKGKKVHLATTD---PAAHLQF-VIAESDQIKVSHIDEDKELADYTEE 394

Query: 185 AFKQAQAKK--VDVLII 199
              +A+      DV  +
Sbjct: 395 VLSKARETMSPDDVAYV 411


>gi|290580599|ref|YP_003484991.1| putative Clp-like ATP-dependent protease ATP-binding subunit
           [Streptococcus mutans NN2025]
 gi|254997498|dbj|BAH88099.1| putative Clp-like ATP-dependent protease ATP-binding subunit
           [Streptococcus mutans NN2025]
          Length = 701

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 25/156 (16%)

Query: 3   NQKVASESLSWIRKLTKGFASTS-LKLKEGITDIISSRRLD---DGVREELEDLLIRSDI 58
            Q+ A+E   +   L    + T   KL+  I +    +++    + V E +E L      
Sbjct: 341 KQQAAAEKEDYEEALK---SKTKIDKLQAQIDNHTEGQKVTATINDVAEAVERL-----T 392

Query: 59  GVAVAQ---KIVEELLT---KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           G+ V+Q     +E L     +   K +     +  VS  I +      +      S    
Sbjct: 393 GIPVSQMGSSDIERLKEMNSRLKGKVIGQDEAVEAVSRAIRRNRAGFDEGNRPIGS---- 448

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             L VG  GVGKT +  +L+  +   G K  +   D
Sbjct: 449 -FLFVGPTGVGKTELAKQLA--LDMFGSKDSIIRLD 481


>gi|167838087|ref|ZP_02464946.1| protease associated ATPase ClpB [Burkholderia thailandensis MSMB43]
          Length = 889

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 38/210 (18%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++E+E +L            + E L  +   +D ++  +   V           +   N
Sbjct: 574 VKDEIETVL-----------NLRELLGARVIGQDHALDAIAQRVR----------TATAN 612

Query: 105 WDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIW 161
            +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK  
Sbjct: 613 LEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKMITINMSEYQEAHSVSGLK-- 669

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                     S  G           +  +     V+++D   + H + + M         
Sbjct: 670 ---------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA 720

Query: 222 LKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           +   +       + L +L +  G +A+ QV
Sbjct: 721 MDDAEGREIDFRNTLIILTSNVGSSAVMQV 750


>gi|167581249|ref|ZP_02374123.1| adenylylsulfate kinase [Burkholderia thailandensis TXDOH]
          Length = 200

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V+ + G+ G GKTT    L  ++ + G K ++  GDT R+ 
Sbjct: 14  PVVWMTGLPGAGKTTTANALLSRLLEGGAKAIVLDGDTLRTG 55


>gi|83719415|ref|YP_442348.1| adenylylsulfate kinase [Burkholderia thailandensis E264]
 gi|167619334|ref|ZP_02387965.1| adenylylsulfate kinase [Burkholderia thailandensis Bt4]
 gi|257138548|ref|ZP_05586810.1| adenylylsulfate kinase [Burkholderia thailandensis E264]
 gi|83653240|gb|ABC37303.1| adenylylsulfate kinase [Burkholderia thailandensis E264]
          Length = 200

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V+ + G+ G GKTT    L  ++ + G K ++  GDT R+ 
Sbjct: 14  PVVWMTGLPGAGKTTTANALLSRLLEGGAKAIVLDGDTLRTG 55


>gi|24379399|ref|NP_721354.1| putative Clp-like ATP-dependent protease, ATP-binding subunit
           [Streptococcus mutans UA159]
 gi|24377329|gb|AAN58660.1|AE014935_12 putative Clp-like ATP-dependent protease, ATP-binding subunit
           [Streptococcus mutans UA159]
          Length = 701

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 25/156 (16%)

Query: 3   NQKVASESLSWIRKLTKGFASTS-LKLKEGITDIISSRRLD---DGVREELEDLLIRSDI 58
            Q+ A+E   +   L    + T   KL+  I +    +++    + V E +E L      
Sbjct: 341 KQQAAAEKEDYEEALK---SKTKIDKLQAQIDNHTEGQKVTATINDVAEAVERL-----T 392

Query: 59  GVAVAQ---KIVEELLT---KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           G+ V+Q     +E L     +   K +     +  VS  I +      +      S    
Sbjct: 393 GIPVSQMGSSDIERLKEMNSRLKGKVIGQDEAVEAVSRAIRRNRAGFDEGNRPIGS---- 448

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             L VG  GVGKT +  +L+  +   G K  +   D
Sbjct: 449 -FLFVGPTGVGKTELAKQLA--LDMFGSKDSIIRLD 481


>gi|309775448|ref|ZP_07670451.1| ABC transporter, ATP-binding protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916837|gb|EFP62574.1| ABC transporter, ATP-binding protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 517

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 67  VEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +E++  K         D +  RV++D  EL+     PL+KP   +   R   + + GVNG
Sbjct: 302 IEKVKEKVKPSFSFLSDRAPGRVIFDAQELVIGYDEPLTKPMRLELE-RNARVAIKGVNG 360

Query: 122 VGKTTVIGKL 131
           +GKTT++  L
Sbjct: 361 LGKTTLLKTL 370


>gi|310659574|ref|YP_003937295.1| hypothetical protein CLOST_2273 [Clostridium sticklandii DSM 519]
 gi|308826352|emb|CBH22390.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 291

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           +  + ++ G  GVGK+TV   L+KK++  G KV +   D 
Sbjct: 31  KNVIAVMSGKGGVGKSTVTALLAKKLTKLGYKVGVLDADV 70


>gi|297526472|ref|YP_003668496.1| adenylylsulfate kinase [Staphylothermus hellenicus DSM 12710]
 gi|297255388|gb|ADI31597.1| adenylylsulfate kinase [Staphylothermus hellenicus DSM 12710]
          Length = 181

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            +  V+   G+ G GKTT+  K+++ + D G +V +  GD  R
Sbjct: 5   DKGFVVWFTGLPGSGKTTLAYKVAEILRDKGYRVEVIDGDWAR 47


>gi|284802135|ref|YP_003414000.1| hypothetical protein LM5578_1890 [Listeria monocytogenes 08-5578]
 gi|284995277|ref|YP_003417045.1| hypothetical protein LM5923_1842 [Listeria monocytogenes 08-5923]
 gi|284057697|gb|ADB68638.1| hypothetical protein LM5578_1890 [Listeria monocytogenes 08-5578]
 gi|284060744|gb|ADB71683.1| hypothetical protein LM5923_1842 [Listeria monocytogenes 08-5923]
          Length = 271

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                +  +   V+ V G  G GKTTV  KL+K ++D    V+L   D
Sbjct: 17  DKMEQEAENSAQVLAVWGSPGCGKTTVAVKLAKYLADKKKNVVLVLCD 64


>gi|322421238|ref|YP_004200461.1| general secretory pathway protein E [Geobacter sp. M18]
 gi|320127625|gb|ADW15185.1| general secretory pathway protein E [Geobacter sp. M18]
          Length = 520

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 22/130 (16%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKL--KEGITDIISSRRLDDGVREELEDLLIRSDI 58
           +S  KV  E+L+   K+  G      +L     I   ++ R +D      +   LI +  
Sbjct: 180 LSPPKVIQEALTSRVKIMSGLNIAEKRLPQDGRIRVKVAGRDVD------IRVSLIPTFF 233

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           G  V  +++++       K++     L D ++L+ + L           S    +ILV G
Sbjct: 234 GERVVLRLLDKQRGVLSLKEI----GLSDKNDLLMERL----------LSRTSGIILVTG 279

Query: 119 VNGVGKTTVI 128
             G GKTT +
Sbjct: 280 PTGSGKTTTL 289


>gi|229916754|ref|YP_002885400.1| arsenite-activated ATPase ArsA [Exiguobacterium sp. AT1b]
 gi|229468183|gb|ACQ69955.1| arsenite-activated ATPase ArsA [Exiguobacterium sp. AT1b]
          Length = 585

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 14/151 (9%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
             L +  +   +  P VI+ +G  GVGKTT+   ++  + + G  V L   D    AA  
Sbjct: 312 GSLDRLVDEIEADGPSVIMTMGKGGVGKTTLASLIAVALHERGHSVHLTTTD---PAAHV 368

Query: 157 QLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---M 212
              I  +      V   +   +      + FK+A     +        R+     L    
Sbjct: 369 AFTIGTNIADTFTVDAIDPKVEIERYRQDVFKEAGDLNEEQ-------RMMLEEDLRSPC 421

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                + R        A    + +  A TG 
Sbjct: 422 TEEIAVFRAFANQVAKAKDCFVVIDTAPTGH 452


>gi|116072594|ref|ZP_01469860.1| MRP protein-like [Synechococcus sp. BL107]
 gi|116064481|gb|EAU70241.1| MRP protein-like [Synechococcus sp. BL107]
          Length = 360

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 65/203 (32%), Gaps = 23/203 (11%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G  GVGK+TV   L+  ++  GLKV L   D +   A   L I           S     
Sbjct: 114 GKGGVGKSTVAVNLACALAQQGLKVGLLDADIYGPNAPTMLGIANQTPEVT--GSGDTQR 171

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +               L+ID    +     ++ G   +IR            VL V 
Sbjct: 172 IKPIESCGIAMVSMG----LLIDEHQPVIWRGPMLNG---IIRQFLYQAEWGERDVLVVD 224

Query: 238 DATTGQNA---LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEG 294
                 +A   L Q      V   T   +  +   AR G  + +     IPV  LGV   
Sbjct: 225 LPPGTGDAQLSLAQAVPMAGVIIVTTPQLVSL-QDARRG--LAMFRQLGIPV--LGV--- 276

Query: 295 INDLEPFVAKDFSAV---ITGCL 314
           + ++  F+  D       + G  
Sbjct: 277 VENMSAFIPPDMPDRRYALFGSG 299


>gi|111021293|ref|YP_704265.1| arsenate (2+)-transporting ATPase [Rhodococcus jostii RHA1]
 gi|110820823|gb|ABG96107.1| probable As(2+)-transporting ATPase [Rhodococcus jostii RHA1]
          Length = 379

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           +++  G  GVGKTT    L+ + ++ G KV++   D  R  A
Sbjct: 29  IVVCCGAGGVGKTTTAASLALRAAEQGRKVVVLTIDPARRLA 70


>gi|124486330|ref|YP_001030946.1| hypothetical protein Mlab_1515 [Methanocorpusculum labreanum Z]
 gi|124363871|gb|ABN07679.1| hydrogenase accessory protein HypB [Methanocorpusculum labreanum Z]
          Length = 215

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 26/156 (16%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC--SE 173
           ++G  G GKT++I K+  ++   G      AGD +     D  +         F     +
Sbjct: 37  LLGAIGSGKTSLIEKIVPELKSRGKVSAAIAGDVY---GDDDFQRIIKTGIIAFNANTGK 93

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPH 231
                A L + A        VD++ I+  G +    +  L A      R++         
Sbjct: 94  ECHLDAHLVHHALDHMDLDNVDIVFIENVGNMVCPTDFKLGAE----KRIV--------- 140

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
               V+  T G + + +  M          I+ K+D
Sbjct: 141 ----VISTTEGDDVVNKHPMMFRDCQI--AIINKVD 170


>gi|25145314|ref|NP_500893.2| hypothetical protein K02B2.1 [Caenorhabditis elegans]
 gi|21431760|sp|Q21122|F26_CAEEL RecName: Full=Probable
           6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
           Short=6PF-2-K/Fru-2,6-P2ase; Short=PFK/FBPase; Includes:
           RecName: Full=6-phosphofructo-2-kinase; Includes:
           RecName: Full=Fructose-2,6-bisphosphatase
 gi|17402837|gb|AAK39245.2| Hypothetical protein K02B2.1 [Caenorhabditis elegans]
          Length = 457

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 8/102 (7%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR---SAAIDQLKIWADRTSA 167
           P+VI++VG+   GKT +  KL + +   G    +     +R   + A D   I     S 
Sbjct: 29  PNVIVMVGLPARGKTYISKKLCRYLKWTGFTTKVFNVGEYRRSDANAAD--AIHGANAS- 85

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
               S   +DA  +  E+ ++A     D L   T G    ++
Sbjct: 86  --FFSPNNADALKVRAESARRAMEDMADYLNSGTGGVAIFDA 125


>gi|302387442|ref|YP_003823264.1| AAA ATPase [Clostridium saccharolyticum WM1]
 gi|302198070|gb|ADL05641.1| AAA ATPase [Clostridium saccharolyticum WM1]
          Length = 271

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 22/45 (48%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             +      V+ V G  G GKTTV  KL+K ++D    V+L   D
Sbjct: 20  ETEPDKGVQVLAVWGSPGCGKTTVAVKLAKYLADRKKNVVLLLCD 64


>gi|254389247|ref|ZP_05004476.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197702963|gb|EDY48775.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 202

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           D +  P  IL+ G+ G GKTT    L++ +  AG + +    + FR
Sbjct: 13  DPAPAPRAILMSGLQGSGKTT----LARALEAAGFRRLCPDEEMFR 54


>gi|319764386|ref|YP_004128323.1| cobalamin synthesis protein p47k [Alicycliphilus denitrificans BC]
 gi|330826605|ref|YP_004389908.1| cobalamin synthesis protein P47K [Alicycliphilus denitrificans
           K601]
 gi|317118947|gb|ADV01436.1| cobalamin synthesis protein P47K [Alicycliphilus denitrificans BC]
 gi|329311977|gb|AEB86392.1| cobalamin synthesis protein P47K [Alicycliphilus denitrificans
           K601]
          Length = 356

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 80/213 (37%), Gaps = 27/213 (12%)

Query: 108 SHRPHVILVVGVNGVGKTTVIG---------KLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           S  P  IL  G  G GKTT++          K++   ++ G        D  R+ + +Q+
Sbjct: 2   SLIPATIL-TGFLGSGKTTLLKRVLSEMHGQKIAVIENEFG--EENIDTDILRTESKEQI 58

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
              ++      +  ++      LA  A ++    + D ++I+T G    +   +A    M
Sbjct: 59  VQMSNGCICCTIREDLRETLQLLA--AKRRKGLVEFDRVVIETTGLA--DPGPVAQTFFM 114

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-TGLIMTKMD---GTARGGG 274
              +   + +   S++ ++DA   Q  L   +      G    + ++K D      +   
Sbjct: 115 DDEI--AETYLIDSIITLVDAKHAQQQLDDRQEARRQVGFADQIFLSKTDLVSEDEKNDL 172

Query: 275 LIPIVVTH-KIPVYFLGVGE----GINDLEPFV 302
           +  +   + + P+  +  GE     + DL  F 
Sbjct: 173 IHRLKHMNPRAPIRAVHFGEVPLSEVLDLRGFN 205


>gi|229525099|ref|ZP_04414504.1| MSHA biogenesis protein MshE [Vibrio cholerae bv. albensis VL426]
 gi|229338680|gb|EEO03697.1| MSHA biogenesis protein MshE [Vibrio cholerae bv. albensis VL426]
          Length = 575

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           V +L    + P           RPH  ILV G  G GKTT +     +++ +G K++ A 
Sbjct: 292 VRKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAE 351

Query: 147 GDT-FRSAAIDQLKIWADRT 165
               +R + I+Q+++     
Sbjct: 352 DPVEYRISRINQVQVHPKIN 371


>gi|258404170|ref|YP_003196912.1| ABC transporter-like protein [Desulfohalobium retbaense DSM 5692]
 gi|257796397|gb|ACV67334.1| ABC transporter related protein [Desulfohalobium retbaense DSM
           5692]
          Length = 264

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           +G NG GK+T++  L+  +     +V++  GD  R  
Sbjct: 37  IGPNGAGKSTLLALLAGWLQPESGRVLIEGGDVHRMG 73


>gi|14590198|ref|NP_142263.1| hypothetical protein PH0274 [Pyrococcus horikoshii OT3]
 gi|3915504|sp|O58012|Y274_PYRHO RecName: Full=Putative GTPase PH0274
 gi|3256663|dbj|BAA29346.1| 317aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 317

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 21/158 (13%)

Query: 64  QKIVEELLT---KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +++E L     +  AK +++       +++I K + PL+           H++ + G  
Sbjct: 5   DELIERLKKGDRRAVAKLITLVENDESKAKVIIKKIYPLTGNA--------HIVGITGPP 56

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSE 173
           G GK+T++ KL K+    GL V + A D    F   A+      ++  +           
Sbjct: 57  GAGKSTLLDKLIKEARREGLIVGVIAVDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMA 116

Query: 174 IGSDAAAL---AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                  L     +A K   A   DV+ ++T G     
Sbjct: 117 TRGSLGGLSKATNDAIKILDAYGCDVIFVETVGVGQIE 154


>gi|324507707|gb|ADY43262.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase [Ascaris suum]
          Length = 553

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 8/142 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+VI +VG+   GKT +  KL + ++  G+K        +R  A + L+   +       
Sbjct: 80  PNVIALVGLPARGKTYISHKLCRYLNWIGIKTKAFNVGEYRRNACN-LEEQGEYEFFSPY 138

Query: 171 CSEIGSDAAALAYEAFK----QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
             E        A  A +      ++K+ +V I D              +    R  + +D
Sbjct: 139 NEEGTRIRDECARLAMEDMGRYLESKEGEVAIFDAT--NTTRERRRWLVDFCDRGHRGVD 196

Query: 227 P-HAPHSVLQVLDATTGQNALR 247
               P  V  V       + + 
Sbjct: 197 GRGPPFRVFFVESVCDDPDIIN 218


>gi|302387182|ref|YP_003823004.1| hypothetical protein Closa_2840 [Clostridium saccharolyticum WM1]
 gi|302197810|gb|ADL05381.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
          Length = 269

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           V+ V G  G GKTTV  KL+K ++D    V+L   D
Sbjct: 27  VLAVWGSPGSGKTTVAVKLAKHLADKKKNVVLVLCD 62


>gi|296329696|ref|ZP_06872181.1| ATP-dependent Clp protease (class III stress gene) [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674093|ref|YP_003865765.1| ATP-dependent Clp protease [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296153194|gb|EFG94058.1| ATP-dependent Clp protease (class III stress gene) [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412337|gb|ADM37456.1| ATP-dependent Clp protease (class III stress protein) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 699

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 73/205 (35%), Gaps = 27/205 (13%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           +++D    + +++  +L  +   ++V+VQ+V   V           S+      +     
Sbjct: 392 LQADEQTKM-KELEAKLRERVIGQEVAVQKVAKAVRR---------SRAGLKSKNRPVGS 441

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            L VG  GVGKT +   L+ ++   G K  +   D          +       +  + S 
Sbjct: 442 FLFVGPTGVGKTELSKTLADEL--FGTKDAIIRLDMS--------EYMEKHAVSKIIGSP 491

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM----AGIGKMIRVLKRLDPHA 229
            G      A +  ++ +     ++++D   + H +   M       G++     R     
Sbjct: 492 PGYVGHEEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFK 551

Query: 230 PHSVLQVLDATTGQNALRQVEMFHA 254
              ++   +A  G+   +Q ++   
Sbjct: 552 DTVIIMTSNAGAGE---KQTKVGFQ 573


>gi|258405552|ref|YP_003198294.1| ATP-dependent protease La [Desulfohalobium retbaense DSM 5692]
 gi|257797779|gb|ACV68716.1| ATP-dependent protease La [Desulfohalobium retbaense DSM 5692]
          Length = 825

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 55/158 (34%), Gaps = 43/158 (27%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLL----IRS 56
           M+ + +      +   L +   +   +L EG         +D+   EEL + L    +  
Sbjct: 257 MAKEGMDKAQKEFF--LREQLKAIRSELGEG-------ADVDEEF-EELREALDKAGLSK 306

Query: 57  DIGVAVAQKIVE----------------------ELLTKRYAKD-VSVQRVLYDVSE--- 90
           D+     +++                        EL  K+ +KD + +++    ++E   
Sbjct: 307 DVKKEADKQLKRLESMHPESSEATVIRTYLEWLVELPWKKTSKDRLDIKQAEKILNEDHY 366

Query: 91  ---LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
               + + ++        +   +  ++  VG  GVGKT
Sbjct: 367 DLQKVKERILEYLSVRKLNPKMKGPILCFVGPPGVGKT 404


>gi|126340344|ref|XP_001362821.1| PREDICTED: similar to 6-phosphofructo-2-kinase [Monodelphis
           domestica]
          Length = 512

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L +P     ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+
Sbjct: 23  LPRPPVPQLTNSPTVIVMVGLPARGKTYMSKKLTRYLNWIGVPTKVFNVGDYRRTAV 79


>gi|254172956|ref|ZP_04879630.1| LAO/AO transport system ATPase [Thermococcus sp. AM4]
 gi|214033112|gb|EEB73940.1| LAO/AO transport system ATPase [Thermococcus sp. AM4]
          Length = 321

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ---- 157
           +  + R +V+ + G  G GK+T++ KL K   + G KV + A D    F   A+      
Sbjct: 40  YPHTGRAYVVGITGPPGSGKSTLLDKLIKLARNEGHKVGVIAIDPTSPFTGGALLGDRLR 99

Query: 158 LKIWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNN 208
           ++  +                  LA    +A K   A   D++ ++T G     
Sbjct: 100 MQRHSTDPGVFIRSMATRGSLGGLAKATNDAVKVLDAAGYDLIFVETVGVGQIE 153


>gi|147821539|emb|CAN67781.1| hypothetical protein VITISV_006408 [Vitis vinifera]
          Length = 1094

 Score = 40.2 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
            +I      +  AK+++ +     +   I +M++   +P   + S    VI +VG+ GVG
Sbjct: 118 TEIRRRANVRSKAKEITCRDGDKRM---ITEMILREEEPTETNVS----VISIVGMGGVG 170

Query: 124 KTTVIGKL-------SKKMSDAGLKVMLAAGDTFRSA 153
           KTT +  +       +KK S      +    D  R  
Sbjct: 171 KTT-LALMVYNDEETAKKFSLKAWVCVSNQYDMVRIT 206


>gi|18976450|ref|NP_577807.1| 2-phosphoglycerate kinase [Pyrococcus furiosus DSM 3638]
 gi|46577082|sp|Q8U4K7|PGK2_PYRFU RecName: Full=2-phosphoglycerate kinase; Short=2PGK
 gi|18891986|gb|AAL80202.1| 2-phosphoglycerate kinase [Pyrococcus furiosus DSM 3638]
          Length = 302

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV--SELIHKMLMPLSKPFNWDFSHR---- 110
           D+  A+A ++ EEL+  R  K V  +  + ++   +L+ K     +K + +    R    
Sbjct: 32  DLAYAIATEVQEELI--RQGKKVVTKEEIRNITYQKLVEKGFKEEAKRYLFWRRFRKLKI 89

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           P +IL+ G  GVGK+T+  +L+ ++        +   DT R
Sbjct: 90  PLIILLGGPTGVGKSTIATELAFRLGIR----SVIGTDTIR 126


>gi|312113279|ref|YP_004010875.1| cobalamin synthesis protein P47K [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218408|gb|ADP69776.1| cobalamin synthesis protein P47K [Rhodomicrobium vannielii ATCC
           17100]
          Length = 234

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 33/162 (20%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA--------GDTFRSAAIDQLKIWADRT 165
           I V G    GKT++I K ++ + + GLKV            GD +R+A I  L  ++   
Sbjct: 4   ITVAGPPSAGKTSLILKAARHLREGGLKVGAVKFDCLSGRDGDRYRAAGIPVLTGFSGNF 63

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
             D                  +  + + +D L+ ++AG       L       IR    +
Sbjct: 64  CPDHFFVTNIE-------RCVEWGRKQGLDFLVSESAG-------LCNRCAPHIRGFLAV 109

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
                     VLD  +G +   +V      A    +++TK D
Sbjct: 110 C---------VLDNLSGIDTPAKVGPMLKTADL--VVVTKGD 140


>gi|256618579|ref|ZP_05475425.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis ATCC
           4200]
 gi|256598106|gb|EEU17282.1| arsenical pump-driving ATPase ArsA [Enterococcus faecalis ATCC
           4200]
          Length = 580

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 32/155 (20%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E L   L+++D G    + + E +  + + +       L D+   + +            
Sbjct: 287 ENLR-QLLKADQG----EFLTETVAQRTFPR-------LKDIVNELDQ------------ 322

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
                 VI  +G  GVGKTT+   ++  ++D G KV LA  D    AA  Q  + A+   
Sbjct: 323 --SGKKVIFTMGKGGVGKTTIAAAIATGLADKGKKVHLATTD---PAAHLQF-VIAESDQ 376

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLII 199
                 +   + A    E   +A+      DV  +
Sbjct: 377 IKVSHIDEDKELADYTEEVLSKARETMSPDDVAYV 411


>gi|242398152|ref|YP_002993576.1| 2-phosphoglycerate kinase [Thermococcus sibiricus MM 739]
 gi|242264545|gb|ACS89227.1| 2-phosphoglycerate kinase [Thermococcus sibiricus MM 739]
          Length = 300

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 57  DIGVA--VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR---- 110
           D+G+A  +A +IV++L  K+       +       +LI   L   ++ + +    R    
Sbjct: 30  DVGIAYSIATEIVKDLQRKKIKLITKEEIRKITYEKLIGHGLKDAARKYLFWHELRRLKY 89

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           P +IL+ G  GVGK+T+  +L+ ++        +   DT R
Sbjct: 90  PMIILIGGATGVGKSTLATELAFRLGIR----TVIGTDTIR 126


>gi|242089585|ref|XP_002440625.1| hypothetical protein SORBIDRAFT_09g004240 [Sorghum bicolor]
 gi|241945910|gb|EES19055.1| hypothetical protein SORBIDRAFT_09g004240 [Sorghum bicolor]
          Length = 1309

 Score = 40.2 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 14/121 (11%)

Query: 21  FASTSLKLKEGITDIISSRRLD---DGVREELEDL-------LIRSDIGVAVAQKIVE-E 69
                 K+        +  ++    D + E+LE++        + S +   VA   ++  
Sbjct: 24  LRRLRKKVSRLFKKSWARHKISCLIDDINEKLEEVAARRGRYTLDSIVANPVAANTIDPR 83

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +L     K  +    +    + +  ML       +   + +  ++ VVG  G+GKTT + 
Sbjct: 84  VLN--LYKTATELVGIEGPRDDLVNMLSLGDDEVDLSDNKKMKIVSVVGFGGLGKTT-LA 140

Query: 130 K 130
           K
Sbjct: 141 K 141


>gi|317144980|ref|XP_001820535.2| ATP-binding cassette multidrug transport protein ATRC [Aspergillus
           oryzae RIB40]
          Length = 1274

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 19/150 (12%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VG +G GK+TV G L +  +     + L   D  R  +I  L+          +  +  
Sbjct: 420 LVGPSGSGKSTVTGLLERWYNTQDGIITLDGVDI-RQLSIQWLRTHIR------IVQQEP 472

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +   A  +E                 AG  + N+     I ++I   K    H     L 
Sbjct: 473 TLFNATIFENVAYGL-----------AGTDYANAPKQVQIERVITACKAAYAHDFIETLP 521

Query: 236 V-LDATTGQNALRQVEMFHAVAGTTGLIMT 264
              D   G+ A                I++
Sbjct: 522 EKYDTQVGERATMLSGGQKQRIAVARSIVS 551


>gi|225449872|ref|XP_002265429.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1322

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 34/124 (27%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREE-------LEDLLIRSDIGVAV 62
           ++S+ +K+ +     + +L     D I+ RRLD  +RE        +E+ L         
Sbjct: 119 AMSFNKKMGEKINKITREL-----DAIAKRRLDLHLREGVGGVSFGIEERL--------P 165

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              +V+E  ++ + +D        D  ++I  ML   +   +     +  VI +VG+ G+
Sbjct: 166 TTSLVDE--SRIHGRD-------ADKEKIIELMLSDEATQVD-----KVSVISIVGMGGI 211

Query: 123 GKTT 126
           GKTT
Sbjct: 212 GKTT 215


>gi|159118657|ref|XP_001709547.1| ATP-binding protein [Giardia lamblia ATCC 50803]
 gi|157437664|gb|EDO81873.1| ATP-binding protein [Giardia lamblia ATCC 50803]
          Length = 369

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           H  L  + +    +  HRP V+LV+G+ G GKTT I +L+ +++  
Sbjct: 8   HLELTVVERQRIREMLHRPPVLLVIGMAGAGKTTFIQRLAAELNQH 53


>gi|325660979|ref|ZP_08149606.1| hypothetical protein HMPREF0490_00338 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085311|ref|ZP_08334397.1| hypothetical protein HMPREF0987_00700 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472486|gb|EGC75697.1| hypothetical protein HMPREF0490_00338 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330408094|gb|EGG87584.1| hypothetical protein HMPREF0987_00700 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 518

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 64  QKIVEELLTK-----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             I+E    K     R+    +  + +++  +L+     PLSKP +     R H I +VG
Sbjct: 299 MDIIELAAEKPKPEFRFKVGRTPGKYIFETKDLVIGYDEPLSKPLSLSME-RGHKIALVG 357

Query: 119 VNGVGKTT 126
            NG+GKTT
Sbjct: 358 ANGIGKTT 365


>gi|309389074|gb|ADO76954.1| AAA ATPase [Halanaerobium praevalens DSM 2228]
          Length = 549

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 36/84 (42%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  ++      + +    +  ++E +H+  +            R  +IL+ G +  GKTT
Sbjct: 239 INNVVELNQIVEKNNHNEIIRIAEALHEKKIAKIADKIKSGMPRNKIILIAGPSSSGKTT 298

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTF 150
              +LS ++   GL+ +  + D +
Sbjct: 299 FTHRLSTQLKINGLRPVQISVDNY 322


>gi|260558051|ref|ZP_05830263.1| ATP-dependent helicase HrpA [Acinetobacter baumannii ATCC 19606]
 gi|260408561|gb|EEX01867.1| ATP-dependent helicase HrpA [Acinetobacter baumannii ATCC 19606]
          Length = 1294

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 75/227 (33%), Gaps = 45/227 (19%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E+E L  +S     V Q+  E L   +  +D+ V +    + E I               
Sbjct: 41  EIEKLFKQS--NAKVRQRF-ERLPKIKLNQDLPVTQYADRLIEAI--------------- 82

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS- 166
             +  VI+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+    
Sbjct: 83  -QKHQVIIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGE 140

Query: 167 ---------ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSIL 211
                      F           L  +    A+          D +IID A     N   
Sbjct: 141 KLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYDTIIIDEAHERSLNIDF 200

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           + G       LK+L P  P   + V  AT     + +   +   A  
Sbjct: 201 IMGY------LKQLLPKRPDLKVIVTSATL---DVNRFSNYFNNAPI 238


>gi|297582403|ref|YP_003698183.1| ATP-dependent metalloprotease FtsH [Bacillus selenitireducens
           MLS10]
 gi|297140860|gb|ADH97617.1| ATP-dependent metalloprotease FtsH [Bacillus selenitireducens
           MLS10]
          Length = 681

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K+V E   K   KDV+         E + + L    + F    +  P  +L+VG  G GK
Sbjct: 153 KLVSEDKKKARFKDVAGADEEKQELEEVVEFLKE-PRKFAEIGARIPKGVLLVGPPGTGK 211

Query: 125 T 125
           T
Sbjct: 212 T 212


>gi|110764513|ref|XP_001122500.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16-like [Apis mellifera]
          Length = 1093

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 70/218 (32%), Gaps = 26/218 (11%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +E+  +   + +  QR    V  +  ++L         +      V+++VG  G GKTT 
Sbjct: 425 DEVTGEAKYRSIQYQRRSLPVFAVRQELL---------NVIRENSVVVIVGETGSGKTT- 474

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
             +L++ + + G       G T       Q +  A  + A  V  E+ +        A +
Sbjct: 475 --QLTQYLHEDGYSHYGIIGCT-------QPRRVAAMSVAKRVSDEMATTLGDKVGYAIR 525

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                  D +I      +     L  G      V+        H      D   G   LR
Sbjct: 526 FEDCTSKDTVIKYMTDGILLRESLREGDLDRYSVI---IMDEAHERSLSTDVLFGL--LR 580

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIP 285
           +V              T MD +++         T +IP
Sbjct: 581 EVVARRHDLKLIVTSAT-MD-SSKFSAFFGNAATFQIP 616


>gi|46133811|ref|XP_389221.1| hypothetical protein FG09045.1 [Gibberella zeae PH-1]
          Length = 1110

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 20/147 (13%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E+LED L           K++++L       DV  Q       E +  + +  SK  N  
Sbjct: 120 EDLEDTL--------STDKVMKKLRALVGVDDVKTQF------EELR-LYVQHSKVLNIS 164

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS-----AAIDQLKIW 161
            +      L  G  G GKTTV    +K +   G+       +T  +      A D ++ +
Sbjct: 165 TADDRFHALFQGNPGTGKTTVAKLYAKFLKSMGVLESDDVLETTGAKLGSNGARDIIETF 224

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQ 188
            D      +  E     ++ +  A KQ
Sbjct: 225 EDGYGGVMLVDEAYQLVSSHSSHAGKQ 251


>gi|269975870|gb|ACZ55873.1| DNA-dependent DNA polymerase [Ictalurid herpesvirus 2]
          Length = 1299

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           L + VREEL++ +++      ++Q++++ ++ K    D  VQ  L DV  ++   ++   
Sbjct: 608 LKEDVREELKEYMLK-----KLSQELIDRVVAKAKGTDTFVQSFLSDVEMVLFDDMVEKL 662

Query: 101 KPF 103
           + F
Sbjct: 663 RLF 665


>gi|156083875|ref|XP_001609421.1| DEAH box RNA helicase [Babesia bovis T2Bo]
 gi|154796672|gb|EDO05853.1| DEAH box RNA helicase, putative [Babesia bovis]
          Length = 1016

 Score = 40.2 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 18/105 (17%)

Query: 65  KIVEELLT-KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           ++ E L   K+  ++   Q  ++   + +   +                V++VVG  G G
Sbjct: 310 ELCERLSESKKKLRETREQLPVFKCRDELLSYIGQF------------QVMVVVGETGSG 357

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTS 166
           KTT   +L++ + ++G       G T   R AA+   +  A    
Sbjct: 358 KTT---QLAQFLYESGYYKRGVIGCTQPRRVAAVSVCQRVAAEMG 399


>gi|147844597|emb|CAN80064.1| hypothetical protein VITISV_035224 [Vitis vinifera]
          Length = 1289

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 34/124 (27%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREE-------LEDLLIRSDIGVAV 62
           ++S+ +K+ +     + +L     D I+ RRLD  +RE        +E+ L         
Sbjct: 160 AMSFNKKMGEKINKITREL-----DAIAKRRLDFHLREGVGGVSFGIEERL--------P 206

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              +V+E  ++ + +D   ++        I  ML   +   +     +  VI +VG+ G+
Sbjct: 207 TTSLVDE--SRIHGRDADKEKN-------IELMLSDEATQLD-----KVSVISIVGMGGI 252

Query: 123 GKTT 126
           GKTT
Sbjct: 253 GKTT 256


>gi|186470775|ref|YP_001862093.1| type VI secretion ATPase [Burkholderia phymatum STM815]
 gi|184197084|gb|ACC75047.1| type VI secretion ATPase, ClpV1 family [Burkholderia phymatum
           STM815]
          Length = 909

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 25/194 (12%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +     + ++L  +   +D ++  +   V      +          D      V L+VG 
Sbjct: 597 LHTVLYLQDKLAERVVGQDEALDAIARRVRTFRADL---------DDPGKPVGVFLLVGP 647

Query: 120 NGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVCSEIGSD 177
           +GVGKT T    L+  +      ++      F+ A ++  LK            +  G  
Sbjct: 648 SGVGKTETAFA-LADMLYGGERNMITVNMSEFQEAHSVSGLK-----------GAPPGYV 695

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD--PHAPHSVLQ 235
                    +  + +   VL++D   + H + + +        V++  +  P    + L 
Sbjct: 696 GYGRGGVLTEAVRRRPYSVLLLDEMEKAHPDVLELFFQVFDKGVMEDGEGVPIDFKNTLI 755

Query: 236 VLDATTGQNALRQV 249
           +L +   Q+ +   
Sbjct: 756 LLTSNAAQDVITDA 769


>gi|332295102|ref|YP_004437025.1| DNA polymerase III, subunits gamma and tau [Thermodesulfobium
           narugense DSM 14796]
 gi|332178205|gb|AEE13894.1| DNA polymerase III, subunits gamma and tau [Thermodesulfobium
           narugense DSM 14796]
          Length = 493

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 14/119 (11%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI---GKLSKKMSDAGLKVMLA 145
            +++  +L   SK         PHV L  G+ G GKTT      K +   +  G K    
Sbjct: 19  QDVVKTVLENASK-----LDDPPHVYLFAGMRGTGKTTAARIFAK-ALNCTSEGKKP-CL 71

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
             ++ +      L+   D    D        DA +L   A     + K  + +ID   R
Sbjct: 72  NCESCK----KFLEGSLDYVEIDAATHSSVDDARSLREMALIAPMSSKYRIFVIDEVHR 126


>gi|326470779|gb|EGD94788.1| multidrug resistance protein [Trichophyton tonsurans CBS 112818]
          Length = 1254

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 63/210 (30%), Gaps = 29/210 (13%)

Query: 114  ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            +  VG +G GK+T+I  L +               TF + AI ++ +   R     V  E
Sbjct: 1054 VAFVGPSGCGKSTMINLLCRFY------DPTTGFITFNNQAIHEIDLHGHRQRLALVQQE 1107

Query: 174  IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                  ++          + + + +ID++               +   +  L       V
Sbjct: 1108 PVLFQGSI---------RENIAMGLIDSSEATEVQIEQACKDANIYEFVMSLPDGLGSEV 1158

Query: 234  LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG--GLIPIVVTHKIPVYFLGV 291
                   +G    R       V     L++   + T +GG   +I +          L  
Sbjct: 1159 GLRGSKLSGGQRQRVAIARALVRDPKVLLLD--EATTKGGKRSIIAVAHR-------LST 1209

Query: 292  GEGINDLEPFVAKDFSAV---ITGCLDYGE 318
             +  + +  F A   +     I      G+
Sbjct: 1210 IQNADTIYVFQAGRIAESGTHIELMGKKGD 1239


>gi|313894780|ref|ZP_07828340.1| ATP-dependent metallopeptidase HflB [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312976461|gb|EFR41916.1| ATP-dependent metallopeptidase HflB [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 665

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 70/220 (31%), Gaps = 27/220 (12%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K    DV+         E + + L    K FN   +  P  +L+ G  G GKT     
Sbjct: 155 KKKVTFADVAGADEAKQELEEVVEFLKTPDK-FNELGARIPKGVLLFGPPGTGKT----L 209

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K ++                 A  Q    +     +       S    L  +A K A 
Sbjct: 210 LAKAVAGE---------------AGVQFFTISGSDFVEMFVGVGASRVRDLFDQAKKAAP 254

Query: 191 AKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +  ID  GR     +          + ++L  +D  A +  + ++ AT   + L 
Sbjct: 255 CIVF-IDEIDAVGRQRGTGLGGGHDEREQTLNQLLVEMDGFASNEGIIIIAATNRPDVLD 313

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
              +         +++ K D   RG   I  V T   PV 
Sbjct: 314 PALLRPGRFD-RQIVVDKPD--VRGREAILKVHTKGKPVA 350


>gi|159039518|ref|YP_001538771.1| LAO/AO transport system ATPase [Salinispora arenicola CNS-205]
 gi|157918353|gb|ABV99780.1| LAO/AO transport system ATPase [Salinispora arenicola CNS-205]
          Length = 329

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 11/151 (7%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L+ +  A D      L  + E     L PL       ++ +  V+ + G  GVGK+T   
Sbjct: 20  LVERARAGDPRAVARLITLVESGDGTL-PLIAAAFAPYAGQAQVVGLTGSPGVGKSTTTN 78

Query: 130 KLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIGSD---AA 179
           +L + +   G +V + A D        AI      ++  A                   +
Sbjct: 79  ELVRALRTRGHRVGVLAIDPSSPFTGGAILGDRVRMQDHATDPGVYIRSMSSRGHLGGLS 138

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           A   +A +  +    DV++++T G       
Sbjct: 139 AATPQAVRVLEGAGCDVVLVETVGVGQAEVE 169


>gi|308798703|ref|XP_003074131.1| CLPB1_SYNEL Chaperone clpB 1 dbj|BAC08941.1| ClpB protein (ISS)
           [Ostreococcus tauri]
 gi|116000303|emb|CAL49983.1| CLPB1_SYNEL Chaperone clpB 1 dbj|BAC08941.1| ClpB protein (ISS)
           [Ostreococcus tauri]
          Length = 826

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 98/265 (36%), Gaps = 33/265 (12%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDI----GVAVAQKIVEE 69
           ++KL +    T  +L      ++  +     +REE+ D  + + +    GV VA+ +  E
Sbjct: 422 LKKLEQQMRVTQDELTNAEAGVLELKDGGAMIREEVTDNDVAAVVSRWTGVPVAKLVSSE 481

Query: 70  ------LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
                 L ++ + + +  +  +  V+E + +    L+ P     +      + +G  GVG
Sbjct: 482 KAKLLQLESELHQRVIGQEAAVTSVAEAVQRSRADLADP-----NGPVASFMFLGPTGVG 536

Query: 124 KTTVIGK-LSKKMSDAGLKVMLAAGDT--FRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           K T + K L+  +            DT   R    + ++  +           +G D   
Sbjct: 537 K-TELAKALANYL---------FNSDTALVRLDMSEYMEKHSVARLIGAPPGYVGYDEGG 586

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNN--SILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           +  +A +Q   K   V++ D   + H +  ++L+  + +      +    +  + L ++ 
Sbjct: 587 MLTDAVRQ---KPYSVVLFDEIEKAHVDVFNVLLQLLDEGHVTDTQGRNVSFRNCLIIMT 643

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIM 263
           +  G + +               +M
Sbjct: 644 SNLGSDEISYANKRRNKVNVKDAVM 668


>gi|226942605|ref|YP_002797678.1| carbon monoxide dehydrogenae assesory protein CooC [Azotobacter
           vinelandii DJ]
 gi|226717532|gb|ACO76703.1| Carbon monoxide dehydrogenae assesory protein, CooC [Azotobacter
           vinelandii DJ]
          Length = 266

 Score = 40.2 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I + G  GVGKTT+   L+   +  G +V+    D
Sbjct: 5   IAISGKGGVGKTTLTSLLAHHYARQGRRVLAIDAD 39


>gi|332528560|ref|ZP_08404548.1| membrane ATPase/protein kinase [Hylemonella gracilis ATCC 19624]
 gi|332042071|gb|EGI78409.1| membrane ATPase/protein kinase [Hylemonella gracilis ATCC 19624]
          Length = 384

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 23/173 (13%)

Query: 50  EDLLIRSDIG--VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E  L+ + +     VAQ+    +       + +         EL+  +L    K F    
Sbjct: 3   EVTLLSALLNQAAPVAQR--RAIAKAITLLESTRADHRSQGDELLTAVLPHTGKAFRLGI 60

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA----------IDQ 157
           S         GV GVGK+T I  L   + + G +V + A D   S +          +++
Sbjct: 61  S---------GVPGVGKSTFIEALGLYLIEHGHRVAVLAVDPSSSLSGGSILGDKTRMEK 111

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           L +           S      A    EA    +A   D++I++T G   + + 
Sbjct: 112 LSVHDRAYIRPSPSSGTLGGVAEKTREAMLVCEAAGYDIVIVETVGVGQSETA 164


>gi|322489558|emb|CBZ24816.1| putative XPA-interacting protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 327

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                  P VILVVG+ G GKTT++ ++       G++      D
Sbjct: 18  TSSTETTPVVILVVGMAGTGKTTLVHRMQHYAHANGIRSYFINLD 62


>gi|238792183|ref|ZP_04635818.1| Arsenical pump-driving ATPase [Yersinia intermedia ATCC 29909]
 gi|238728420|gb|EEQ19939.1| Arsenical pump-driving ATPase [Yersinia intermedia ATCC 29909]
          Length = 590

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 10/158 (6%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            + L       +         ++E++ K L  LS       + +  +++++G  GVGKTT
Sbjct: 289 TDALRQLLLKNETQHSISDNPMAEVLPK-LPTLSSLVEEIAADQHGLVMLMGKGGVGKTT 347

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           +   ++ K+++ GL V L   D    AA  +  +     +      +  ++         
Sbjct: 348 LAASIAVKLAEKGLDVHLTTSD---PAAHIENTLNGQLNNLTVSRIDPLAETERYRRHVL 404

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                       +D  G+      L +   + I V + 
Sbjct: 405 STKGKS------LDAQGKALLEEDLRSPCTEEIAVFQA 436


>gi|282854372|ref|ZP_06263709.1| ABC transporter, ATP-binding protein [Propionibacterium acnes J139]
 gi|282583825|gb|EFB89205.1| ABC transporter, ATP-binding protein [Propionibacterium acnes J139]
 gi|314966392|gb|EFT10491.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL082PA2]
 gi|314980871|gb|EFT24965.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL110PA3]
 gi|315090185|gb|EFT62161.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL110PA4]
 gi|315093540|gb|EFT65516.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL060PA1]
 gi|327326991|gb|EGE68772.1| iron compound ABC transporter, ATP-binding protein
           [Propionibacterium acnes HL103PA1]
          Length = 265

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           +++G+NG GKTT++  L+        +V L   D  R  A ++ ++ A
Sbjct: 39  MIIGLNGSGKTTLLHLLAGLRKPGMGRVWLGKRDLARIGAKERSRMMA 86


>gi|238485254|ref|XP_002373865.1| ABC multidrug transporter, putative [Aspergillus flavus NRRL3357]
 gi|220698744|gb|EED55083.1| ABC multidrug transporter, putative [Aspergillus flavus NRRL3357]
          Length = 1291

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 19/150 (12%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VG +G GK+TV G L +  +     + L   D  R  +I  L+          +  +  
Sbjct: 420 LVGPSGSGKSTVTGLLERWYNTQDGIITLDGVDI-RQLSIQWLRTHIR------IVQQEP 472

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           +   A  +E                 AG  + N+     I ++I   K    H     L 
Sbjct: 473 TLFNATIFENVAYGL-----------AGTDYANAPKQVQIERVITACKAAYAHDFIETLP 521

Query: 236 V-LDATTGQNALRQVEMFHAVAGTTGLIMT 264
              D   G+ A                I++
Sbjct: 522 EKYDTQVGERATMLSGGQKQRIAVARSIVS 551


>gi|188509941|gb|ACD56627.1| putative ABC transporter [Gossypium raimondii]
          Length = 251

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 28/210 (13%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           ++ G NG GKTT +  L+     +  +++    D  +S    Q K+  +  S      E 
Sbjct: 62  VLTGSNGSGKTTFLRMLAGFSRPSAGQILWNGHDISQSGIFHQYKLQLNWLSLKDAVKEK 121

Query: 175 GSDAAALAY-EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            +    + + E  +    K +  L +   GRL  +   M  +G+  R+           +
Sbjct: 122 FTVLDNVQWFEVLEGKHGKSLPALELMGLGRLAKDKARMLSMGQRKRLQLARLLAIDRPI 181

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             + + +   +        +        I+   +   +GG +I   V   +P+       
Sbjct: 182 WLLDEPSVALD--------NEGVRLLEYIIA--EHRKKGGIVI---VATHLPI------- 221

Query: 294 GIND-----LEPFVAKDFSAVITGCLDYGE 318
            I D     L P   +  +  +   LD  +
Sbjct: 222 QIEDAMNLRLPPRFPRRMT--LVDMLDRAD 249


>gi|264678460|ref|YP_003278367.1| LAO/AO transporter ATPase [Comamonas testosteroni CNB-2]
 gi|262208973|gb|ACY33071.1| LAO/AO transport system ATPase [Comamonas testosteroni CNB-2]
          Length = 334

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 19/141 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + S          L+  +L    K F    S         GV GVGK+T I  L   + +
Sbjct: 30  ESSRADHREQADGLLTALLPHTGKAFRLGIS---------GVPGVGKSTFIEALGLFLIE 80

Query: 138 AGLKVMLAAGD---TFRSAAI-------DQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GL+V + A D   T    +I       +QL +  +        S      A    EA  
Sbjct: 81  KGLRVAVLAIDPSSTVSGGSILGDKTRMEQLSMRLEAYIRPSPSSGTLGGVAEKTREAML 140

Query: 188 QAQAKKVDVLIIDTAGRLHNN 208
             +A   DV+II+T G   + 
Sbjct: 141 VCEAAGYDVVIIETVGVGQSE 161


>gi|183984755|ref|YP_001853046.1| transport system kinase [Mycobacterium marinum M]
 gi|183178081|gb|ACC43191.1| transport system kinase [Mycobacterium marinum M]
          Length = 292

 Score = 40.2 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 36/206 (17%)

Query: 106 DFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ---- 157
           D+S RP  VI + G  G GK+T I  L     + G +V + A D        A+      
Sbjct: 39  DWSQRPARVIGITGPPGAGKSTTITGLVGAYRERGTRVAVLAVDPSSPFSGGALLGDRIR 98

Query: 158 LKIWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           +    + +               LA     A +   A + DV++++T G   +       
Sbjct: 99  MTAHVNDSEVLIRSVASRGHLGGLAASVPAAIRLLGALRYDVVLLETVGVGQSE------ 152

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDGTARGG 273
               I V    DP      + VL+  TG +A++  +     VA    + + K D      
Sbjct: 153 ----IEVAAVADP-----TVVVLNPGTG-DAVQAAKAGLLEVADI--VAVNKADRVGAEQ 200

Query: 274 GLIPIVVTHKIPVYFL------GVGE 293
            +  +      P+  L      G+GE
Sbjct: 201 TVRDLRAETNAPILSLVAVKSEGIGE 226


>gi|298676052|ref|YP_003727802.1| DNA repair and recombination protein RadA [Methanohalobium
           evestigatum Z-7303]
 gi|298289040|gb|ADI75006.1| DNA repair and recombination protein RadA [Methanohalobium
           evestigatum Z-7303]
          Length = 325

 Score = 40.2 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 22/162 (13%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSHRP 111
           + +DIG + A KI+                ++ +  + + K+    S+            
Sbjct: 41  LSADIGESAASKIINSARRSANIGGFETGDLVMERRKQVGKLSTGCSEFDEMMEGGIDTQ 100

Query: 112 HVILVVGVNGVGKTTVIGKLSKKM--------SDAGLKVMLAAGD---TFRSAAIDQLKI 160
            +  + G  G GKT    +++ ++           GL   +   D   TFR   I Q+  
Sbjct: 101 SITELYGEFGSGKT----QIAHQLAVNVQLPNEQGGLNGSVIFIDTENTFRPERIKQMVQ 156

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
            A          E       +A     +A      +L++D+A
Sbjct: 157 GASEHHNIDYDPEEFLKNIHVA-----RAYNSNHQILLMDSA 193


>gi|149177956|ref|ZP_01856553.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM
           8797]
 gi|148843149|gb|EDL57515.1| ATP-dependent protease ATP-binding subunit [Planctomyces maris DSM
           8797]
          Length = 428

 Score = 40.2 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            V   ++IV  L      ++ + + +   V     +++    +  + +       IL++G
Sbjct: 72  NVPTPREIVTHLNDYVIGQERAKKVMAVAVHNHYKRLMHSEEEGSDVELDKSN--ILLIG 129

Query: 119 VNGVGKTTVIGKLSKKMS 136
             G GKT +   L++ + 
Sbjct: 130 PTGSGKTLLAKSLARYLQ 147


>gi|292627082|ref|XP_690329.4| PREDICTED: fidgetin [Danio rerio]
          Length = 684

 Score = 40.2 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 22/161 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +++    +    E    +L P+ +P      H P  IL+ G  G GKTT    L++ +S 
Sbjct: 429 ELAGNCHIKAALEE--DLLWPVLRPN--PAIHPPKTILLFGPQGGGKTT----LARSLSS 480

Query: 138 AGLKVMLAAGDTFR---SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
                       +R   +    +LK  A++              A +     +  + + +
Sbjct: 481 Q------IGASFYRLSCATLASKLKGEAEQLLLTLFSVATARQPAMVLLSEVEAIEEEGL 534

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
              +     +     I      + + V     P      L 
Sbjct: 535 RQQL-----QAQLEKIQHNQSNQFLVVCTTRRPDLIKDSLL 570


>gi|325068601|ref|ZP_08127274.1| ABC transporter-like protein [Actinomyces oris K20]
          Length = 284

 Score = 40.2 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 13/178 (7%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P+ +  +        V+ ++G NGVGKTT++  L   ++    +V +   D  R+ A  
Sbjct: 17  TPVLRGIDLSVEAG-EVVCLLGPNGVGKTTLVENLLGSLTPTAGRVRVLGTDPRRAGADF 75

Query: 157 QLKI-WADRTSADFVCSEIGSDAAALAYEAFKQAQA-KKVDVLIIDTAGRLHN-NSILMA 213
             ++    ++  D     +      +       A     VD ++ D  G     +S L  
Sbjct: 76  WARVGLVQQSWTDHAKWRVRDQLEWIRSVQLTAASRVSSVDEVL-DAVGLSEKADSRLSR 134

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLD-ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
             G   R +           L VLD  TTG + + +            LI+ + D  A
Sbjct: 135 LSGGQRRTIDFAAALMAAPELLVLDEPTTGLDPVSKAR-------LHDLILARGDDDA 185


>gi|218296199|ref|ZP_03496955.1| ABC transporter related [Thermus aquaticus Y51MC23]
 gi|218243271|gb|EED09801.1| ABC transporter related [Thermus aquaticus Y51MC23]
          Length = 226

 Score = 40.2 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++ + L+   + F  +      V+ ++G NG GK+T++  L+ ++   G +  L   D
Sbjct: 2   VVVEALVKQGRLFGLNLRAEGGVVGLLGPNGAGKSTLLAVLAGRLKPDGGRASLLGHD 59


>gi|225441811|ref|XP_002283887.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147811123|emb|CAN61350.1| hypothetical protein VITISV_021799 [Vitis vinifera]
 gi|297739670|emb|CBI29852.3| unnamed protein product [Vitis vinifera]
          Length = 230

 Score = 40.2 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 75/210 (35%), Gaps = 28/210 (13%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-DFVCSE 173
           ++ G NG GKTT++  L+     +  +V+    D  ++   DQ K+  +  S  D +  +
Sbjct: 40  VLSGANGSGKTTMLRMLAGFNRPSAGQVLWNGHDVTKAGVFDQYKLQLNWLSLKDAINDK 99

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                  + +E   + + + +  L +   GRL N       +G+  RV           +
Sbjct: 100 FTVFENVVWFELLDKKEGRSMPALELMGLGRLANEKPRRLSMGQRKRVQLARLLALDRPI 159

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             + + +    AL +             I+   D   +GG +I   V    P+       
Sbjct: 160 WLLDEPSV---ALDE-----DGLRLLEYIIA--DHRKKGGIVI---VATHQPI------- 199

Query: 294 GIND-----LEPFVAKDFSAVITGCLDYGE 318
            I D     L P   +  S   T  LD  +
Sbjct: 200 QIEDAMFLRLPPRFPRGMSH--TDMLDRAD 227


>gi|313825786|gb|EFS63500.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL063PA1]
          Length = 265

 Score = 40.2 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           +++G+NG GKTT++  L+        +V L   D  R  A ++ ++ A
Sbjct: 39  MIIGLNGSGKTTLLHLLAGLRKPGMGRVWLGKRDLARIGAKERSRMMA 86


>gi|167571442|ref|ZP_02364316.1| ClpA/B type protease [Burkholderia oklahomensis C6786]
          Length = 889

 Score = 40.2 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 75/210 (35%), Gaps = 38/210 (18%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++E+E +L            + + +  +   +D ++  +   V           +   N
Sbjct: 574 VKDEIETVL-----------NLRDLIGARVIGQDHALDAIAQRVR----------TATAN 612

Query: 105 WDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIW 161
            +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK  
Sbjct: 613 LEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKMITINMSEYQEAHSVSGLK-- 669

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                     S  G           +  +     V+++D   + H + + M         
Sbjct: 670 ---------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA 720

Query: 222 LKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           +   +       + L +L +  G +A+ Q 
Sbjct: 721 MDDAEGREIDFRNTLIILTSNVGSSAVMQA 750


>gi|225375913|ref|ZP_03753134.1| hypothetical protein ROSEINA2194_01549 [Roseburia inulinivorans DSM
           16841]
 gi|225212234|gb|EEG94588.1| hypothetical protein ROSEINA2194_01549 [Roseburia inulinivorans DSM
           16841]
          Length = 220

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  R +++  +L+     PLSKP N     R H I +VG NG+GKTT
Sbjct: 22  TPGRYIFETKDLVIGYDEPLSKPLNISME-RGHKIALVGANGIGKTT 67


>gi|221487528|gb|EEE25760.1| AAA ATPase, putative [Toxoplasma gondii GT1]
          Length = 347

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 62/174 (35%), Gaps = 19/174 (10%)

Query: 78  DVSVQRVLYDVSELIH-KMLMPLSKP-FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++S    L+ V +L+  K++ P+ +P  +      P  IL+ G  G GKTT    L+K M
Sbjct: 65  NISEIAGLHRVKKLLTDKIINPILRPELHVGLHQAPRGILLFGPPGTGKTT----LAKWM 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           + +          +     I +     +               + +  +       K+  
Sbjct: 121 AASSGASFFEVTPSS---IISKFHGETETLIKALFKVAEADSPSLVFIDEIDSLLGKR-- 175

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                   R   +   +    ++++++  +   +   VL V+ AT   + L + 
Sbjct: 176 --------REKEDDTSIRMKNQLLQMMDGVSSCSGDKVLVVVGATNRPDMLDEA 221


>gi|195436564|ref|XP_002066237.1| GK22253 [Drosophila willistoni]
 gi|194162322|gb|EDW77223.1| GK22253 [Drosophila willistoni]
          Length = 5492

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 24/123 (19%)

Query: 39   RRLDDGVREELEDLL---IRSDI-----GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
            R ++D +       L   +  DI        V+++I+E +   +   D+   R +  ++ 
Sbjct: 1362 RLIEDTLYNNFRKRLDLELLFDIQTNRASSQVSRRILEAIRNFKMRSDIVWTRNMTRMAV 1421

Query: 91   LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK----KMSDAGLKVMLAA 146
            L  K L    +P           +L+VG  G GKTTV   L+     ++      +    
Sbjct: 1422 LTAKAL-EFDEP-----------VLLVGPTGCGKTTVCQLLASIANTQLRILNCHMHTEG 1469

Query: 147  GDT 149
             D 
Sbjct: 1470 ADF 1472


>gi|307594201|ref|YP_003900518.1| AAA family ATPase [Vulcanisaeta distributa DSM 14429]
 gi|307549402|gb|ADN49467.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta distributa DSM
           14429]
          Length = 737

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLI-RSDIGVAVAQKIV-EELLTKRYAKDVSV 81
               L+ GI D+      D+ +R++LE + +  +D  +   ++IV   L           
Sbjct: 404 LRKALQSGILDVNKE---DEEIRKDLEKIKVTMNDF-LEAMREIVPSALREIHIEIPKVR 459

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFS------HRPHVILVVGVNGVGKTTVIGK 130
              +  + E+  ++   +  P  +           P  IL+ G  G GKT  + K
Sbjct: 460 WSDIGGLEEVKQELREAIEWPLKYPERFRKMGIKPPKGILLFGPPGTGKTL-LAK 513


>gi|294679633|gb|ADF29627.1| Pi36 [Oryza rufipogon]
          Length = 1056

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 19/117 (16%)

Query: 26  LKLKEGITDIISSRR----LDDGVREELEDLLIRSDI--GVAVAQKIVEELLTK------ 73
            +L + +  +    +    + D + +E+E  L+  D   G      IV  +  +      
Sbjct: 101 RRLGKQVKKLFKKTKHRVTIADAI-QEVEKKLLEIDARHGRYPVDNIV--IPARPSPIDP 157

Query: 74  ---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTT 126
                 K  +    + +  + + KML    +  N + S+R   I+ VVG+ G+GKTT
Sbjct: 158 RILNIEKMANNLVGIDEPRDELIKMLSQHERDNNLNTSNRKTKIVYVVGMGGLGKTT 214


>gi|228470900|ref|ZP_04055745.1| hypothetical protein PORUE0001_0376 [Porphyromonas uenonis 60-3]
 gi|228307297|gb|EEK16311.1| hypothetical protein PORUE0001_0376 [Porphyromonas uenonis 60-3]
          Length = 332

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 6/148 (4%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            K+L P+        +  P V+L  G    GKT ++ +L++ +   GL VM     TFR 
Sbjct: 64  KKILDPMRVKVEIADARTPIVVLF-GPKTSGKTMMLVRLTRWLKKNGLSVMPIR--TFRP 120

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A D  K   D  +     +E      A+ +   K ++  +    I++  G  + NS   
Sbjct: 121 -ADDNYKKMCDSFNDMVDSNEAAKGTNAIDFMLLKVSKDGRPICQILEAPGEHYYNSERP 179

Query: 213 AGI--GKMIRVLKRLDPHAPHSVLQVLD 238
           +      + +++  L     + +L   D
Sbjct: 180 SQSFPPYIHKIISELRNKKIYVILTEGD 207


>gi|50842145|ref|YP_055372.1| ABC transporter, nucleotide binding/ATPase protein
           [Propionibacterium acnes KPA171202]
 gi|50839747|gb|AAT82414.1| ABC transporter, nucleotide binding/ATPase protein
           [Propionibacterium acnes KPA171202]
 gi|332675070|gb|AEE71886.1| ABC transporter [Propionibacterium acnes 266]
          Length = 257

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           +++G+NG GKTT++  L+        +V L   D  R  A ++ ++ A
Sbjct: 31  MIIGLNGSGKTTLLHLLAGLRKPGMGRVWLGKRDLARIGAKERSRMMA 78


>gi|284048883|ref|YP_003399222.1| arsenite-activated ATPase ArsA [Acidaminococcus fermentans DSM
           20731]
 gi|283953104|gb|ADB47907.1| arsenite-activated ATPase ArsA [Acidaminococcus fermentans DSM
           20731]
          Length = 577

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  +++    +      VI  +G  GVGKTTV   L+ +++  G +V+L   D    A  
Sbjct: 312 LQEVAEDLERNHRK---VIFTMGKGGVGKTTVAASLALRLAQKGHQVLLTTTD---PAGH 365

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            Q +I            +  ++      E   QA+   
Sbjct: 366 LQ-EILDQTDRLQLCQIDEQAELRRYQKEVLDQARKNG 402


>gi|295130231|ref|YP_003580894.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           SK137]
 gi|291375848|gb|ADD99702.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           SK137]
 gi|313771393|gb|EFS37359.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL074PA1]
 gi|313811311|gb|EFS49025.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL083PA1]
 gi|313830936|gb|EFS68650.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL007PA1]
 gi|313833362|gb|EFS71076.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL056PA1]
 gi|314973822|gb|EFT17918.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL053PA1]
 gi|314976473|gb|EFT20568.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL045PA1]
 gi|314983414|gb|EFT27506.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL005PA1]
 gi|315080117|gb|EFT52093.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL078PA1]
 gi|315096440|gb|EFT68416.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL038PA1]
 gi|327326846|gb|EGE68629.1| iron compound ABC transporter, ATP-binding protein
           [Propionibacterium acnes HL096PA2]
 gi|327442951|gb|EGE89605.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL043PA1]
 gi|327445075|gb|EGE91729.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL043PA2]
 gi|328760315|gb|EGF73886.1| iron compound ABC transporter, ATP-binding protein
           [Propionibacterium acnes HL099PA1]
          Length = 265

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           +++G+NG GKTT++  L+        +V L   D  R  A ++ ++ A
Sbjct: 39  MIIGLNGSGKTTLLHLLAGLRKPGMGRVWLGKRDLARIGAKERSRMMA 86


>gi|323340255|ref|ZP_08080519.1| ATP-dependent Clp protease [Lactobacillus ruminis ATCC 25644]
 gi|323092446|gb|EFZ35054.1| ATP-dependent Clp protease [Lactobacillus ruminis ATCC 25644]
          Length = 723

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 34/234 (14%)

Query: 56  SDIGVAVA-----QKIVEELLTKRYAK-DVSVQRVLYDVSELIHKMLMPLSKPFN----- 104
           SD    V      + IVEE+      +     Q  L ++++ + K ++   +        
Sbjct: 386 SDENAPVVSDKDMEAIVEEMTQIPVGELKEKEQNQLRNLADSLKKHVIGQDEAVTKTARA 445

Query: 105 -------WDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
                  ++ S+RP    L VG  GVGKT    +L++++   G K  +   D        
Sbjct: 446 IRRNRVGFNKSNRPIGSFLFVGPTGVGKTETAKQLAEEL--FGSKDSMIRFD-------- 495

Query: 157 QLKIWADRTSA-DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LM 212
            +  + ++ S    + S  G      A +  +Q +     ++++D   + H + +   L 
Sbjct: 496 -MSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEQVRRHPYSLILLDEIEKAHPDVMHMFLQ 554

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
                 +   K        +++ +       +++  V       GTT  I+ K+
Sbjct: 555 ILDDGRLTDSKGQTVSFKDTIIIMTSNAGSGDSVINVGFGAEANGTTNSILDKL 608


>gi|313234379|emb|CBY24578.1| unnamed protein product [Oikopleura dioica]
          Length = 706

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           + +M+  +   +       P  I+V+G  GVGKT+V  +L+       + V     D+F+
Sbjct: 337 LVEMVEDIVMEYKKSRGLLPIRIIVLGPPGVGKTSVATELAAHYKIHHIHVKAVIEDSFK 396


>gi|194883867|ref|XP_001976018.1| GG22624 [Drosophila erecta]
 gi|190659205|gb|EDV56418.1| GG22624 [Drosophila erecta]
          Length = 3046

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 62   VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            V++KI++ +   +   D+   R +  ++ +  K L    +P           +L+VG  G
Sbjct: 1378 VSRKILDAIRNFKLRDDIVWTRNMTRMAVVTAKAL-EFDEP-----------VLLVGPTG 1425

Query: 122  VGKTTVIGKLSK----KMSDAGLKVMLAAGDT 149
             GKTTV   L+     ++      +     D 
Sbjct: 1426 CGKTTVCQLLASIANVQLRILNCHMHTEGADF 1457


>gi|282882139|ref|ZP_06290780.1| primosomal protein N' [Peptoniphilus lacrimalis 315-B]
 gi|281298169|gb|EFA90624.1| primosomal protein N' [Peptoniphilus lacrimalis 315-B]
          Length = 781

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 30/145 (20%)

Query: 1   MSNQKVASESLSW-IRKLTKGFASTSLKLKEGITDIISSRRLDDGVR-EELE------DL 52
           +  +K   +S ++ + KL +G      +  + +  II  + +   +  +EL+      + 
Sbjct: 169 IKTEKYLKKSNNFSMEKL-QGLTK---RQSQAVNYIIEKKDVSKKLLMKELKMSSTPIEA 224

Query: 53  LIRSDIGVAVAQKIVEELLT-KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           LI+ D    +  +   E+ T K+Y   V     L +  E                   + 
Sbjct: 225 LIKKD----LVTEFDREVKTDKKYVGKVGTNHTLNEEQE----------DAIRSIEGTKK 270

Query: 112 HVILVVGVNGVGKT---TVIGKLSK 133
            V ++ G+ G GKT     + K++ 
Sbjct: 271 EVSILYGLTGSGKTEVYLNLAKIAL 295


>gi|254387472|ref|ZP_05002711.1| lysine arginine ornithine transport system kinase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294815142|ref|ZP_06773785.1| Transport system kinase [Streptomyces clavuligerus ATCC 27064]
 gi|326443503|ref|ZP_08218237.1| lysine arginine ornithine transport system kinase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701198|gb|EDY47010.1| lysine arginine ornithine transport system kinase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294327741|gb|EFG09384.1| Transport system kinase [Streptomyces clavuligerus ATCC 27064]
          Length = 320

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 15/164 (9%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++V +    R      +  ++   S  + +++  LS       +    VI + G  GVGK
Sbjct: 6   ELVAQAREGRPRAVARLISLVEGASPQLREVMAALS-----PLTGGAFVIGLTGSPGVGK 60

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIGSD 177
           +T    L      AG +V + A D        A+      +   A               
Sbjct: 61  STTTSALVTAYRKAGKRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMATRGH 120

Query: 178 AAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
              LA+   +A +   A   +V++++T G   +   + A     
Sbjct: 121 LGGLAWAAPQAIRVLDAAGCEVILVETVGVGQSEVEIAAQADTC 164


>gi|94499523|ref|ZP_01306060.1| ATPase with chaperone activity, ATP-binding subunit [Oceanobacter
           sp. RED65]
 gi|94428277|gb|EAT13250.1| ATPase with chaperone activity, ATP-binding subunit [Oceanobacter
           sp. RED65]
          Length = 859

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 40/177 (22%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL-----LIRSDI 58
           +K   E+ S +  L          +   I +        D + ++L+ +     L+  D+
Sbjct: 470 EKQIREAESELVALEDQLEK-EQAIIGQIKEAREKGESQDELADQLKAIQGESPLVFLDV 528

Query: 59  GVAVAQKIVE-----------------------ELLTKRYAKDVSVQRVLYDVSELIHKM 95
                  I+E                       EL  +   +D ++Q++   V       
Sbjct: 529 DKQAVAAIIESWTGIPVGNMMQDEINGLLSLEDELKKRVVGQDHAMQKIAQAVR------ 582

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFR 151
              +S+    D      V ++ G +G GKT T +  L++ +      ++      F+
Sbjct: 583 ---ISRSGLTDPRKPVGVFMMAGTSGTGKTETALA-LAEHLYGGEDNLITINMSEFK 635


>gi|313814809|gb|EFS52523.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL059PA1]
 gi|315099007|gb|EFT70983.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL059PA2]
          Length = 263

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           +++G+NG GKTT++  L+        +V L   D  R  A ++ ++ A
Sbjct: 39  MIIGLNGSGKTTLLHLLAGLRKPGMGRVWLGKRDLARIGAKERSRMMA 86


>gi|308161613|gb|EFO64051.1| Uridine kinase [Giardia lamblia P15]
          Length = 679

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            V+ + G +  GKTT   KL+  +   G + ++ + D +
Sbjct: 413 KVVFISGPSSSGKTTFAKKLAYNLKVMGREPLIISLDNY 451


>gi|289426283|ref|ZP_06428029.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           SK187]
 gi|289426831|ref|ZP_06428557.1| ABC transporter, ATP-binding protein [Propionibacterium acnes J165]
 gi|289153448|gb|EFD02163.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           SK187]
 gi|289159920|gb|EFD08098.1| ABC transporter, ATP-binding protein [Propionibacterium acnes J165]
 gi|313763905|gb|EFS35269.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL013PA1]
 gi|313791560|gb|EFS39678.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL110PA1]
 gi|313802353|gb|EFS43579.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL110PA2]
 gi|313808223|gb|EFS46697.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL087PA2]
 gi|313812494|gb|EFS50208.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL025PA1]
 gi|313818989|gb|EFS56703.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL046PA2]
 gi|313820819|gb|EFS58533.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL036PA1]
 gi|313822419|gb|EFS60133.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL036PA2]
 gi|313828130|gb|EFS65844.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL063PA2]
 gi|313839121|gb|EFS76835.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL086PA1]
 gi|314915109|gb|EFS78940.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL005PA4]
 gi|314918737|gb|EFS82568.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL050PA1]
 gi|314920538|gb|EFS84369.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL050PA3]
 gi|314925576|gb|EFS89407.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL036PA3]
 gi|314932212|gb|EFS96043.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL067PA1]
 gi|314954672|gb|EFS99078.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL027PA1]
 gi|314958506|gb|EFT02608.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL002PA1]
 gi|314959896|gb|EFT03998.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL002PA2]
 gi|314962285|gb|EFT06386.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL082PA1]
 gi|314968281|gb|EFT12380.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL037PA1]
 gi|314979251|gb|EFT23345.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL072PA2]
 gi|314986835|gb|EFT30927.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL005PA2]
 gi|314989394|gb|EFT33485.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL005PA3]
 gi|315077372|gb|EFT49432.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL053PA2]
 gi|315083999|gb|EFT55975.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL027PA2]
 gi|315085202|gb|EFT57178.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL002PA3]
 gi|315089006|gb|EFT60982.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL072PA1]
 gi|315100914|gb|EFT72890.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL046PA1]
 gi|315103068|gb|EFT75044.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL050PA2]
 gi|315107157|gb|EFT79133.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL030PA1]
 gi|315108131|gb|EFT80107.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL030PA2]
 gi|327330959|gb|EGE72703.1| iron compound ABC transporter, ATP-binding protein
           [Propionibacterium acnes HL096PA3]
 gi|327331164|gb|EGE72904.1| iron compound ABC transporter, ATP-binding protein
           [Propionibacterium acnes HL097PA1]
 gi|327447450|gb|EGE94104.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL013PA2]
 gi|327450054|gb|EGE96708.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL087PA3]
 gi|327455219|gb|EGF01874.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL092PA1]
 gi|327455393|gb|EGF02048.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL083PA2]
 gi|328752722|gb|EGF66338.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL087PA1]
 gi|328752944|gb|EGF66560.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL020PA1]
 gi|328759359|gb|EGF72975.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL025PA2]
          Length = 265

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           +++G+NG GKTT++  L+        +V L   D  R  A ++ ++ A
Sbjct: 39  MIIGLNGSGKTTLLHLLAGLRKPGMGRVWLGKRDLARIGAKERSRMMA 86


>gi|237830311|ref|XP_002364453.1| AAA family ATPase, putative [Toxoplasma gondii ME49]
 gi|211962117|gb|EEA97312.1| AAA family ATPase, putative [Toxoplasma gondii ME49]
          Length = 347

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 62/174 (35%), Gaps = 19/174 (10%)

Query: 78  DVSVQRVLYDVSELIH-KMLMPLSKP-FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++S    L+ V +L+  K++ P+ +P  +      P  IL+ G  G GKTT    L+K M
Sbjct: 65  NISEIAGLHRVKKLLTDKIINPILRPELHVGLHQAPRGILLFGPPGTGKTT----LAKWM 120

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           + +          +     I +     +               + +  +       K+  
Sbjct: 121 AASSGASFFEVTPSS---IISKFHGETETLIKALFKVAEADSPSLVFIDEIDSLLGKR-- 175

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                   R   +   +    ++++++  +   +   VL V+ AT   + L + 
Sbjct: 176 --------REKEDDTSIRMKNQLLQMMDGVSSCSGDKVLVVVGATNRPDMLDEA 221


>gi|159112969|ref|XP_001706712.1| Uridine kinase [Giardia lamblia ATCC 50803]
 gi|157434811|gb|EDO79038.1| Uridine kinase [Giardia lamblia ATCC 50803]
          Length = 682

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            V+ + G +  GKTT   KL+  +   G + ++ + D +
Sbjct: 416 KVVFISGPSSSGKTTFAKKLAYNLKVMGREPLIISLDNY 454


>gi|325968458|ref|YP_004244650.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
 gi|323707661|gb|ADY01148.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta moutnovskia
           768-28]
          Length = 737

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 13/115 (11%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLI-RSDIGVAVAQKIVEELLTKRYAKDVSVQ 82
               L+ GI D+      D+ +R++LE + +  +D  +   ++IV   L + + +   V+
Sbjct: 404 LRKALQSGILDVNKE---DEEIRKDLEKIKVSMNDF-LEAMREIVPSALREIHIEIPKVR 459

Query: 83  RVLYDVSELIHKMLMPLSK-PFNWDFS------HRPHVILVVGVNGVGKTTVIGK 130
                  E + + L    + P  +           P  IL+ G  G GKT  + K
Sbjct: 460 WSDIGGLEEVKQELKEAIEWPLKYPERFRKMGIRPPKGILLFGPPGTGKTL-LAK 513


>gi|305432135|ref|ZP_07401301.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Campylobacter coli JV20]
 gi|304444800|gb|EFM37447.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Campylobacter coli JV20]
          Length = 164

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +  +I   G +  GKTT+I K++ +     LKV++   D
Sbjct: 2   KKSIIAFSGPSNSGKTTLITKIANEFIKQNLKVLIIKHD 40


>gi|316933110|ref|YP_004108092.1| ABC transporter-like protein [Rhodopseudomonas palustris DX-1]
 gi|315600824|gb|ADU43359.1| ABC transporter related protein [Rhodopseudomonas palustris DX-1]
          Length = 549

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 19/106 (17%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMP---LSKPF-------NWDFSHRPHVIL-V 116
           EELL K   K     +++  V+E +   ++    L+K F       +  F   P  I+ V
Sbjct: 289 EELLAKASEKQTQTAQIIIPVAERLGNNVVDFEHLTKGFGDRLLIDDLTFKLPPGGIVGV 348

Query: 117 VGVNGVGKTTVIGKLSKKM---SDAGLKVMLAAGDTFRSAAIDQLK 159
           +G NG GKTT+      +M    +      +  G+T R   +DQ +
Sbjct: 349 IGPNGAGKTTLF-----RMITGQEKPDSGTITVGETVRLGYVDQSR 389


>gi|302550333|ref|ZP_07302675.1| shikimate kinase [Streptomyces viridochromogenes DSM 40736]
 gi|302467951|gb|EFL31044.1| shikimate kinase [Streptomyces viridochromogenes DSM 40736]
          Length = 172

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           + PHV++V+GV G GKTT+   L+ ++      V  A GD F   A
Sbjct: 2   NTPHVVVVMGVAGTGKTTIGPLLAARL-----GVPYAEGDDFHPQA 42


>gi|239947127|ref|ZP_04698880.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921403|gb|EER21427.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 319

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 68  EELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           EE+  K   K  ++S    +  V      M   + KP ++  + +  +++  G  GVGK+
Sbjct: 53  EEIRLKAINKLNEISEVNKITIVFTESKPMEKKVQKPKHFIGNVKKIILVASGKGGVGKS 112

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTF 150
           T+   +++++S    +V +   D +
Sbjct: 113 TISALIAQQLSLENYRVGIVDADIY 137


>gi|90021256|ref|YP_527083.1| ATP-dependent protease ATP-binding subunit ClpX [Saccharophagus
           degradans 2-40]
 gi|123277147|sp|Q21KA8|CLPX_SACD2 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|89950856|gb|ABD80871.1| ATP-dependent Clp protease, ATP-binding subunit ClpX
           [Saccharophagus degradans 2-40]
          Length = 431

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 42  DDGVREELEDLLIRS--DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           +D +REE+++    S  D  +   Q+I E L      +  + + +   V     ++ +  
Sbjct: 47  NDIIREEIQESTTESTGD-KLPTPQEISETLDEYVIGQKQAKKVLAVAVYNHYKRLRVGD 105

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            K    D       IL+VG  G GKT +   L++ +
Sbjct: 106 KKKSKDDVELGKSNILLVGPTGSGKTLLAETLARLL 141


>gi|167629255|ref|YP_001679754.1| DNA polymerase iii gamma/tau subunit [Heliobacterium modesticaldum
           Ice1]
 gi|167591995|gb|ABZ83743.1| DNA polymerase iii gamma/tau subunit [Heliobacterium modesticaldum
           Ice1]
          Length = 606

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 51/177 (28%), Gaps = 10/177 (5%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           +       EL+ +  +  +      +    H  L  G  G GKTT    L+K ++ +G  
Sbjct: 9   EWRPQSFQELVGQEHVSRTLQNAIAYQRIAHAYLFCGPRGTGKTTTAKILAKALNCSGHG 68

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            +    D     AI+      D    D   +    +   L  +     Q     V IID 
Sbjct: 69  PVRPCNDCLNCRAINTGASH-DVLEIDAASNRGVDEIRELREQVKYAPQEGNYKVYIID- 126

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
                    +     +    L +     P +V+ VL  T        +         
Sbjct: 127 --------EVHMLTTEAFNALLKTLEEPPANVIFVLATTEVHKIPATILSRCQRFDF 175


>gi|167628703|ref|YP_001679202.1| hypothetical protein HM1_0586 [Heliobacterium modesticaldum Ice1]
 gi|167591443|gb|ABZ83191.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 271

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++P          V+ V G  G GKTTV  KL+K ++D    V L   D
Sbjct: 16  NQPEGPAVEKDTQVLAVWGSPGSGKTTVSVKLAKHLADKKRNVALLLCD 64


>gi|166368126|ref|YP_001660399.1| chromosome partitioning protein [Microcystis aeruginosa NIES-843]
 gi|159027145|emb|CAO86776.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
 gi|166090499|dbj|BAG05207.1| chromosome partitioning protein [Microcystis aeruginosa NIES-843]
          Length = 198

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 28/162 (17%)

Query: 113 VILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +I VV +  GVGKTT    L+    +     +L   D  RSA                  
Sbjct: 2   IISVVALKGGVGKTTTSIHLAAYFQEK-APTLLIDADKNRSA---------------LHW 45

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S   +    +A +A      K+   +I+DT  R   + +     G  + +L     H   
Sbjct: 46  SREDTLPFMVASQAGATGLVKQYTHIIVDTQARPEPDELKDLAQGSDLLILPTTPNHLDI 105

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
            V            ++  E+   +     +++T++D   + G
Sbjct: 106 DVT-----------IKAAELLSTMTDNYRVLLTQVDSRTKTG 136


>gi|313900668|ref|ZP_07834161.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312954730|gb|EFR36405.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 284

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +V+L+ G++G GKTT +G     + D G   +    D F    +  L+      +A    
Sbjct: 5   NVVLITGMSGAGKTTAMG----ILEDMGYHCI----DNF---PVQLLESLGKIINA---K 50

Query: 172 SEIGSDAAALAYEAFKQAQ--------AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
            +      ALA  A    +           V V+ +D +     N  L+       R   
Sbjct: 51  PDPRYSNIALATTAIDYPKFLQYFENIDVNVRVVFLDAS-----NEKLLLRYKFTRR--- 102

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI---MTKMDGTARGGGLIPIVV 280
                  H ++    A T + A+              ++    T MD       L+  + 
Sbjct: 103 ------HHPMMMFSKANTLEEAIEVERDMFNALNERAVLHIDTTMMDQHGLKSVLMEKLS 156

Query: 281 THKIP---VYFLGVG 292
            +  P   + F+  G
Sbjct: 157 LNSKPVFSISFVSFG 171


>gi|301629930|ref|XP_002944085.1| PREDICTED: uncharacterized protein CC_2483-like [Xenopus (Silurana)
           tropicalis]
          Length = 327

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 24/156 (15%)

Query: 70  LLTKRYAK-----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +  AK     + +         E++  +L    + F    S         GV GVGK
Sbjct: 9   VQRRAMAKAITLLESTRPDHRAQADEMLTALLPHTGRAFRLGIS---------GVPGVGK 59

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAI-------DQLKIWADRTSADFVCSEI 174
           +T I  L   +   GL+V + A D   T    +I       +QL +           S  
Sbjct: 60  STFIEALGLHLIAQGLRVAVLAIDPSSTVSGGSILGDKTRMEQLSMQESAYIRPSPSSGT 119

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
               A    E+    +A   DV+I++T G   + + 
Sbjct: 120 LGGVAEKTRESLLVCEAAGYDVVIVETVGVGQSETA 155


>gi|255323418|ref|ZP_05364549.1| Cell division protease FtsH homolog [Campylobacter showae RM3277]
 gi|255299455|gb|EET78741.1| Cell division protease FtsH homolog [Campylobacter showae RM3277]
          Length = 642

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G+  ++K+V     K    DV+  +   +  + I   L    +  N   +  P  +L+V
Sbjct: 159 LGMGSSKKLVNSEKPKVKFADVAGVQEAKEEVKEIVDFLKHPDRYINLG-AKIPKGVLLV 217

Query: 118 GVNGVGKTTVIGK 130
           G  G GKT  + K
Sbjct: 218 GPPGTGKTL-LAK 229


>gi|297201038|ref|ZP_06918435.1| nodulation ABC transporter NodI [Streptomyces sviceus ATCC 29083]
 gi|197712178|gb|EDY56212.1| nodulation ABC transporter NodI [Streptomyces sviceus ATCC 29083]
          Length = 332

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V  V+G NG GKTT +  L+  +   G +  +   D  R A
Sbjct: 36  TVYGVLGPNGAGKTTTVKMLATLLRPDGGEAHVFGHDVVREA 77


>gi|85813875|emb|CAF32377.1| putative ABC transporter, ATP-binding protein [Streptomyces rimosus
           subsp. paromomycinus]
          Length = 628

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 105 WDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
            D    P   + +VG  G GK+T+   L++     G ++ L   D  R  A  +L+    
Sbjct: 398 LDLDLAPAETVALVGTTGAGKSTLAKLLARLYDPTGGRITLDGADL-REVADAELR---- 452

Query: 164 RTSADFVCSEIGSDAAALAYE-AFKQAQAKKVDVLI 198
            +    V  E    + ++A   A  +  A + D++ 
Sbjct: 453 -SGVCMVTQEPFLFSGSVADNIALGRPDATREDIVA 487


>gi|57167841|ref|ZP_00366981.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Campylobacter coli RM2228]
 gi|57020963|gb|EAL57627.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Campylobacter coli RM2228]
          Length = 164

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +  +I   G +  GKTT+I K++ +     LKV++   D
Sbjct: 2   KKSIIAFSGPSNSGKTTLITKIANEFIKQNLKVLIIKHD 40


>gi|317505662|ref|ZP_07963565.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663247|gb|EFV03011.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 224

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 13/96 (13%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA--------AIDQLKIWADRTSADFVCS 172
           GVGKTT+    +  ++  G  V++   D  RS          ++  K   +  +      
Sbjct: 15  GVGKTTLCALFANYLTRKGKSVLVVDADYQRSLSSQRQDESEMEDYKTLEEPYNIYQFNL 74

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           +    +  L  E  K         ++ID+ G L ++
Sbjct: 75  DSKEKSDKLMDEMKKIEG-----YVLIDSPGALTDD 105


>gi|312261118|dbj|BAJ33564.1| CC-NBS-LRR type resistance protein [Capsicum frutescens]
          Length = 1315

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 38/165 (23%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRS--DIG 59
           SNQ+V+   L+        F     KL+E I  +       + +++++ DL ++   D+G
Sbjct: 104 SNQQVSDRKLNLSDDY---FLDIKEKLEETIETL-------EDLQKQIGDLGLQKHLDLG 153

Query: 60  VAVAQK-----IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
             +  +     +V+E  +K   + +  +R       LI ++L   S   N        V+
Sbjct: 154 KKLETRTPSTSLVDE--SKILGRMIEKER-------LIDRLLSSDSNGENL------TVV 198

Query: 115 LVVGVNGVGKTTVI------GKLSKKMSDAGLKVMLAAGDTFRSA 153
            +VG+ GVGKTT+        K+           +  A D FR  
Sbjct: 199 PIVGMGGVGKTTLAKIVYNDKKVKDHFDLKAWFCVSEAYDAFRIT 243


>gi|118616217|ref|YP_904549.1| transport system kinase [Mycobacterium ulcerans Agy99]
 gi|118568327|gb|ABL03078.1| transport system kinase [Mycobacterium ulcerans Agy99]
          Length = 292

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 36/206 (17%)

Query: 106 DFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ---- 157
           D+S RP  VI + G  G GK+T I  L     + G +V + A D        A+      
Sbjct: 39  DWSQRPARVIGITGPPGAGKSTTITGLVGAYRERGTRVAVLAVDPSSPFSGGALLGDRIR 98

Query: 158 LKIWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           +    + +               LA     A +   A + DV+++ T G   +       
Sbjct: 99  MTAHVNDSEVLIRSVASRGHLGGLAASVPAAIRLLGALRYDVVLLKTVGVGQSE------ 152

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDGTARGG 273
               I V+   DP      + VL+  TG +A++  +     VA    + + K D      
Sbjct: 153 ----IEVVAVADP-----TVVVLNPGTG-DAVQAAKAGLLEVADI--VAVNKADRVGAEQ 200

Query: 274 GLIPIVVTHKIPVYFL------GVGE 293
            +  +      P+  L      G+GE
Sbjct: 201 TVRDLRAETNAPILSLVAVKSEGIGE 226


>gi|116696364|ref|YP_841940.1| ATP-dependent protease Clp, ATPase subunit [Ralstonia eutropha H16]
 gi|113530863|emb|CAJ97210.1| ATP-dependent protease Clp, ATPase subunit [Ralstonia eutropha H16]
          Length = 906

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 66/193 (34%), Gaps = 23/193 (11%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +     + ++L  +   +D ++  +   +      +          D      V L+VG 
Sbjct: 593 LHTVLYLQDKLGERVVGQDEALDAIARRIRTFRADL---------DDPGKPVGVFLLVGP 643

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVCSEIGSDA 178
           +GVGKT     L+  +      ++      F+ A ++  LK            +  G   
Sbjct: 644 SGVGKTETAHALADLLYGGERNMITVNMSEFQEAHSVSGLK-----------GAPPGYVG 692

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD--PHAPHSVLQV 236
                   +  + +   V+++D   + H + + +        V++  +  P    + + +
Sbjct: 693 YGRGGVLTEAVRRRPYSVVLLDEMEKAHPDVLELFFQVFDKGVMEDGEGVPIDFRNTVIL 752

Query: 237 LDATTGQNALRQV 249
           L +   Q+ + + 
Sbjct: 753 LTSNAAQDVITEA 765


>gi|55732503|emb|CAH92952.1| hypothetical protein [Pongo abelii]
          Length = 500

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           MP  K      ++ P  I++VG+   GKT +  KL++ ++  G+   +     +R  A+ 
Sbjct: 1   MPFRKACGPKLTNSPTAIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVK 60

Query: 157 QL 158
           Q 
Sbjct: 61  QY 62


>gi|323495542|ref|ZP_08100616.1| adenylylsulfate kinase [Vibrio sinaloensis DSM 21326]
 gi|323319423|gb|EGA72360.1| adenylylsulfate kinase [Vibrio sinaloensis DSM 21326]
          Length = 206

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 99  LSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           + K F       +P V+   G++G GK+TV G L  K++  G    L  GD  R  
Sbjct: 19  IDKQFRAKLKQQKPAVLWFTGLSGAGKSTVAGALENKLAQQGYHTYLLDGDNVRHG 74


>gi|255067397|ref|ZP_05319252.1| P-type DNA transfer ATPase VirB11 [Neisseria sicca ATCC 29256]
 gi|255048367|gb|EET43831.1| P-type DNA transfer ATPase VirB11 [Neisseria sicca ATCC 29256]
          Length = 365

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            + + + +       DV +    Y + E  HK    L++ F    + R + I +VG  G 
Sbjct: 154 VRDLSDRMK---LPSDVKLTDWQYKMLE--HKANGELNEFFRIAIAQRLN-ICMVGGTGS 207

Query: 123 GKTTVIGKLS 132
           GKTT    L+
Sbjct: 208 GKTTFTKTLA 217


>gi|126435711|ref|YP_001071402.1| arginine/ornithine transport system ATPase [Mycobacterium sp. JLS]
 gi|126235511|gb|ABN98911.1| methylmalonyl-CoA mutase metallochaperone MeaB [Mycobacterium sp.
           JLS]
          Length = 325

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 19/141 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +         EL+ +++       +   +         GV GVGK+T I  L   + +
Sbjct: 29  ESTRADHREQAQELLLELMPQAGSAMHVGIT---------GVPGVGKSTTIEALGMYLIE 79

Query: 138 AGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            G +V + A D  + R+          + +L +  D        S      A    E   
Sbjct: 80  QGHRVAVLAVDPSSTRTGGSILGDKTRMAKLAVHPDAYIRPSPTSGTLGGVAKATRETIV 139

Query: 188 QAQAKKVDVLIIDTAGRLHNN 208
             +A   DV++++T G   + 
Sbjct: 140 LLEAAGYDVILVETVGVGQSE 160


>gi|197101247|ref|NP_001125963.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 isoform 1
           [Pongo abelii]
 gi|55729822|emb|CAH91639.1| hypothetical protein [Pongo abelii]
          Length = 514

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI +VG+   GKT +  KL++ ++  G+   +     +R  A+ Q 
Sbjct: 30  KLTNSPTVIAMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY 82


>gi|47229296|emb|CAG04048.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 445

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           ++ P VI+++G+   GKT +  KL++ ++  G+   +     +R  A+   K +
Sbjct: 31  TNSPTVIVMIGLPARGKTYMSKKLTRYLNWIGVPTKVFNLGVYRREAVQSYKSY 84


>gi|256826453|ref|YP_003150413.1| chromosome segregation ATPase [Kytococcus sedentarius DSM 20547]
 gi|256689846|gb|ACV07648.1| chromosome segregation ATPase [Kytococcus sedentarius DSM 20547]
          Length = 370

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 112 HVILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTF-RSAAIDQLKIWADRTSAD 168
            V++ V     GVGKTT    L+  +++ GL+V++   D    ++    ++  +      
Sbjct: 115 TVVVTVANQKGGVGKTTSTVNLAAALAEGGLRVLVIDLDPQGNASTALSIEHQSGVAGVY 174

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVL--IIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            V  +  +        A    ++ ++DV+   ID AG       L+A   ++ R L+ + 
Sbjct: 175 DVLIDEATLPEV----AQSSPESDRIDVVPATIDLAGAEIELVSLVARETRLRRALQDVR 230

Query: 227 PHAPHSVLQVLD 238
               + V+ +  
Sbjct: 231 DERSYDVVLIDC 242


>gi|221117562|ref|XP_002160539.1| PREDICTED: similar to MGC130873 protein [Hydra magnipapillata]
          Length = 338

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +   +    K    D  H    ILV+G+ G GKTT + +L+  +        +   D
Sbjct: 5   VENEISEELKSIKIDEKHEMPCILVLGMAGSGKTTFVQRLTSYLYSKKTPPYVINLD 61


>gi|210621719|ref|ZP_03292768.1| hypothetical protein CLOHIR_00713 [Clostridium hiranonis DSM 13275]
 gi|210154601|gb|EEA85607.1| hypothetical protein CLOHIR_00713 [Clostridium hiranonis DSM 13275]
          Length = 437

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 20/144 (13%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDI---GVAVA--QKIVEELLTKRY-AKDVS 80
           KLK G+   I+ +RL    R E+ D     D+    +     +KIV  +L K+   +++S
Sbjct: 136 KLKSGMD--IAEKRLPQDGRLEILDKDNSVDVRVSSIPTVNGEKIVMRILNKKIFIENIS 193

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
                 D  +L+ ++            S +  +IL+ G  G GKTT +  + KK+ D   
Sbjct: 194 KPDFTEDEMKLVSEI-----------ISKKSGIILICGPTGSGKTTTVYSIIKKLMDLER 242

Query: 141 KVMLAAGDT-FRSAAIDQLKIWAD 163
            +        ++   I+Q+++   
Sbjct: 243 NITTIENPIEYKIKGINQIQVNEK 266


>gi|17567265|ref|NP_510126.1| P-GlycoProtein related family member (pgp-12) [Caenorhabditis
           elegans]
 gi|3876291|emb|CAA91799.1| C. elegans protein F22E10.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1318

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 28/137 (20%)

Query: 51  DLLIRSDIGVAVAQKIVEE----------------LLTKRYAKDVSVQRVLYDVSELIHK 94
            +L+ + +  A   +I++                 ++ K   ++V  +       ++++ 
Sbjct: 378 MVLLNARVAAATIYEIIDRTPDIDVYSTEGQKMTNVVGKVVFEEVHFRYPTRKKVKVLNG 437

Query: 95  MLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           +          + + +P   + +VG +G GK+T +G L++     G KVM+   D  RS 
Sbjct: 438 L----------NLTVKPGTSVALVGHSGCGKSTSVGLLTRLYEPEGGKVMIDGQDV-RSL 486

Query: 154 AIDQLKIWADRTSADFV 170
            ID L+        + +
Sbjct: 487 NIDWLRKTVGIVQQEPI 503


>gi|308454666|ref|XP_003089939.1| hypothetical protein CRE_30282 [Caenorhabditis remanei]
 gi|308267702|gb|EFP11655.1| hypothetical protein CRE_30282 [Caenorhabditis remanei]
          Length = 99

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           P+VI++VG+   GKT +  KL + +   G K  +     +R
Sbjct: 29  PNVIVMVGLPARGKTYISKKLCRYLKWTGFKTKVFNVGEYR 69


>gi|291546527|emb|CBL19635.1| Putative GTPases (G3E family) [Ruminococcus sp. SR1/5]
          Length = 310

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 9/101 (8%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+ G  G GKTT I K +  +   G+ + +   D     A++   +       D    E+
Sbjct: 6   LITGFLGSGKTTFIKKYASYLLKKGMNIGILENDF---GAVNVDMMLLQDLMGDNCELEM 62

Query: 175 GSDAAALAYEA------FKQAQAKKVDVLIIDTAGRLHNNS 209
            S                        D +I++ +G    + 
Sbjct: 63  VSGGCDADCHRRRFKTKLIAMGMCGYDRVIVEPSGIFDVDE 103


>gi|167564294|ref|ZP_02357210.1| ClpA/B type protease [Burkholderia oklahomensis EO147]
          Length = 719

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 75/210 (35%), Gaps = 38/210 (18%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++E+E +L            + + +  +   +D ++  +   V           +   N
Sbjct: 404 VKDEIETVL-----------NLRDLIGARVIGQDHALDAIAQRVR----------TATAN 442

Query: 105 WDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIW 161
            +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK  
Sbjct: 443 LEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKMITINMSEYQEAHSVSGLK-- 499

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                     S  G           +  +     V+++D   + H + + M         
Sbjct: 500 ---------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA 550

Query: 222 LKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           +   +       + L +L +  G +A+ Q 
Sbjct: 551 MDDAEGREIDFRNTLIILTSNVGSSAVMQA 580


>gi|114762543|ref|ZP_01441987.1| virulence VirC1 protein [Pelagibaca bermudensis HTCC2601]
 gi|114544798|gb|EAU47803.1| virulence VirC1 protein [Roseovarius sp. HTCC2601]
          Length = 239

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 62/179 (34%), Gaps = 26/179 (14%)

Query: 121 GVGKTTVI-GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT+    +S  ++  G +VML   D+ R       +      S+  +CS      A
Sbjct: 17  GSGKTTLSRALISAAIAA-GRRVMLIDTDSTRVLGAWHARAETGGLSSPLLCSVTVESVA 75

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +  +  +   A   D + IDTAG         A     I VL      A H V  V+ +
Sbjct: 76  GVEDQINQVYMAGTADFIFIDTAGVG-------AEWSDGIAVL------ADHIVTPVMLS 122

Query: 240 TTGQNALRQVEMFHAV----------AGTTGLIMTKMD-GTARGGGLIPIVVTHKIPVY 287
           T+  +   Q   +                  +++  +D  T R    +      + PV 
Sbjct: 123 TSDFDVGAQTSDWFEKLKSRVDDPSSLPRHHVVLNMVDPKTTRADAALIEEALTRFPVI 181


>gi|328767725|gb|EGF77774.1| hypothetical protein BATDEDRAFT_27495 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 262

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 96  LMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA- 153
           L P ++P     S+  H+ILV+ G  GVGK+TV  +L+  ++D+G +V +   D    + 
Sbjct: 14  LSPSTEPVVAGLSNVKHIILVLSGKGGVGKSTVATELALVLADSGNRVGVLDIDLTGPSL 73

Query: 154 ----AIDQLKIWADRTS-ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                +   ++             +      A+  +         +D LIIDT
Sbjct: 74  PEMFGLAGQQVHQSSAGWIPVYADQTKQL--AMIKQFLSDVAWGNLDYLIIDT 124


>gi|320530149|ref|ZP_08031219.1| ATP-dependent metallopeptidase HflB [Selenomonas artemidis F0399]
 gi|320137582|gb|EFW29494.1| ATP-dependent metallopeptidase HflB [Selenomonas artemidis F0399]
          Length = 651

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 70/220 (31%), Gaps = 27/220 (12%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K    DV+         E + + L    K FN   +  P  +L+ G  G GKT     
Sbjct: 141 KKKVTFADVAGADEAKQELEEVVEFLKTPDK-FNELGARIPKGVLLFGPPGTGKT----L 195

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K ++                 A  Q    +     +       S    L  +A K A 
Sbjct: 196 LAKAVAGE---------------AGVQFFTISGSDFVEMFVGVGASRVRDLFDQAKKAAP 240

Query: 191 AKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +  ID  GR     +          + ++L  +D  A +  + ++ AT   + L 
Sbjct: 241 CIVF-IDEIDAVGRQRGTGLGGGHDEREQTLNQLLVEMDGFASNEGIIIIAATNRPDVLD 299

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
              +         +++ K D   RG   I  V T   PV 
Sbjct: 300 PALLRPGRFD-RQIVVDKPD--VRGREAILKVHTKGKPVA 336


>gi|307721184|ref|YP_003892324.1| ATPase AAA [Sulfurimonas autotrophica DSM 16294]
 gi|306979277|gb|ADN09312.1| AAA ATPase central domain protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 551

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 55/183 (30%), Gaps = 21/183 (11%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E + +     D+     +    E I   +    +  N+  +  P  +L+VG  GVGK T
Sbjct: 143 IEAIKSDVSFDDIGGISDVKVELEEIIDFMKNPKRYKNFG-ARMPKGVLLVGPPGVGK-T 200

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           +I K                      A +             +V           A    
Sbjct: 201 MIAKAVAH-----------------EAGVPFYYQSGASFVQIYVGMGAKRVHELFAAAKK 243

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
                  +D   ID  G+  + +        + ++L  +D     S + V+ AT   + L
Sbjct: 244 NAPSIIFIDE--IDAVGKKRDGNRNDEREATLNQLLTEMDGFEGSSGVIVVAATNKIDVL 301

Query: 247 RQV 249
              
Sbjct: 302 DSA 304


>gi|306833729|ref|ZP_07466855.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Streptococcus bovis ATCC 700338]
 gi|304424066|gb|EFM27206.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Streptococcus bovis ATCC 700338]
          Length = 589

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 25/115 (21%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
            AS     K  +  I         V +E E++   +D+     + +  +L  +   ++VS
Sbjct: 310 LASILQSAKSSLDRIF-------EVLDEPEEV---ADV----TEHLTHDLTGQVSFENVS 355

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            Q  + D          PL + FN D      V  +VG  G GKTT+I  L +  
Sbjct: 356 FQ-YVAD---------KPLIQNFNLDVKPGEMV-AIVGPTGAGKTTLINLLMRFY 399


>gi|299531042|ref|ZP_07044455.1| arginine/ornithine transport system ATPase [Comamonas testosteroni
           S44]
 gi|298720999|gb|EFI61943.1| arginine/ornithine transport system ATPase [Comamonas testosteroni
           S44]
          Length = 334

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 19/141 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + S          L+  +L    K F    S         GV GVGK+T I  L   + +
Sbjct: 30  ESSRADHREQADGLLTALLPHTGKAFRLGIS---------GVPGVGKSTFIEALGLFLIE 80

Query: 138 AGLKVMLAAGD---TFRSAAI-------DQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GL+V + A D   T    +I       +QL +  +        S      A    EA  
Sbjct: 81  KGLRVAVLAIDPSSTVSGGSILGDKTRMEQLSMRLEAYIRPSPSSGTLGGVAEKTREAML 140

Query: 188 QAQAKKVDVLIIDTAGRLHNN 208
             +A   DV+I++T G   + 
Sbjct: 141 VCEAAGYDVVIVETVGVGQSE 161


>gi|121534120|ref|ZP_01665945.1| LAO/AO transport system ATPase [Thermosinus carboxydivorans Nor1]
 gi|121307223|gb|EAX48140.1| LAO/AO transport system ATPase [Thermosinus carboxydivorans Nor1]
          Length = 314

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 15/154 (9%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           KI EE+L       +++ R +  V       +  + +   +  + + +VI + G  G GK
Sbjct: 4   KIAEEVLA---GSRLALARAITAVENEYDDAVKIMQEL--YPHTGKAYVIGITGPPGAGK 58

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSEIGSD 177
           +T+  KL+K+    G  V + A D    F   AI      +                   
Sbjct: 59  STLTDKLAKEYRRQGKTVGIVAVDPTSPFSGGAILGDRIRMNELTLDEGVFIRSMGTRGS 118

Query: 178 AAALAY---EAFKQAQAKKVDVLIIDTAGRLHNN 208
              L+    E  K   A   D++ I+T G   + 
Sbjct: 119 LGGLSRKTAEVVKILDASGKDIIFIETVGVGQSE 152


>gi|71065609|ref|YP_264336.1| ATP dependent DNA/RNA helicase [Psychrobacter arcticus 273-4]
 gi|71038594|gb|AAZ18902.1| probable ATP dependent DNA/RNA helicase [Psychrobacter arcticus
           273-4]
          Length = 1423

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 50/163 (30%), Gaps = 29/163 (17%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR------------PHVIL 115
            +L  KR   +    R    V   I  M   L++  N D                  VI+
Sbjct: 87  NDLDKKRAQYEQLKTRSQQAVQARIDSMPNKLAEKLNLDLPVSQRADDLIQAIIDNQVII 146

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS--------- 166
           V G  G GKTT + KL+  ++  G++  +      R AA       A+            
Sbjct: 147 VAGETGSGKTTQLPKLA-MLAGRGIRGQIGHTQPRRLAARSVANRIAEELGEQLGNTVSF 205

Query: 167 -ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTA 202
              F           L  +    A+          D +IID A
Sbjct: 206 KIRFNEQGTAQSVVKLMTDGILLAELGHDRFLSKYDTIIIDEA 248


>gi|306831584|ref|ZP_07464742.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978490|ref|YP_004288206.1| ABC transporter permease/ATP-binding protein [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|304426369|gb|EFM29483.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178418|emb|CBZ48462.1| ABC transporter permease/ATP-binding protein [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 589

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 25/115 (21%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
            AS     K  +  I         V +E E++   +D+     + +  +L  +   ++VS
Sbjct: 310 LASILQSAKSSLDRIF-------EVLDEPEEV---ADV----TEHLTHDLTGQVSFENVS 355

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            Q  + D          PL + FN D      V  +VG  G GKTT+I  L +  
Sbjct: 356 FQ-YVAD---------KPLIQNFNLDVKPGEMV-AIVGPTGAGKTTLINLLMRFY 399


>gi|195028710|ref|XP_001987219.1| GH20092 [Drosophila grimshawi]
 gi|193903219|gb|EDW02086.1| GH20092 [Drosophila grimshawi]
          Length = 754

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 22/188 (11%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++ 
Sbjct: 320 DVKGCDEAKQELKEVVEFLKSPDKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVAG 374

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                       F +A  +  ++         V                +      +D  
Sbjct: 375 EANVP------FFHAAGPEFDEVL--------VGQGARRVRDLFKAAKARAPCVIFIDE- 419

Query: 198 IIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
            ID+ G    NS+L       + ++L  +D    ++ + VL AT  ++ L Q  +     
Sbjct: 420 -IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRF 478

Query: 257 GTTGLIMT 264
               ++ T
Sbjct: 479 DVEVVVST 486


>gi|108800087|ref|YP_640284.1| arginine/ornithine transport system ATPase [Mycobacterium sp. MCS]
 gi|119869214|ref|YP_939166.1| arginine/ornithine transport system ATPase [Mycobacterium sp. KMS]
 gi|108770506|gb|ABG09228.1| methylmalonyl-CoA mutase metallochaperone MeaB [Mycobacterium sp.
           MCS]
 gi|119695303|gb|ABL92376.1| methylmalonyl-CoA mutase metallochaperone MeaB [Mycobacterium sp.
           KMS]
          Length = 325

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 19/141 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +         EL+ +++       +   +         GV GVGK+T I  L   + +
Sbjct: 29  ESTRADHREQAQELLLELMPQAGSAMHVGIT---------GVPGVGKSTTIEALGMYLIE 79

Query: 138 AGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            G +V + A D  + R+          + +L +  D        S      A    E   
Sbjct: 80  QGHRVAVLAVDPSSTRTGGSILGDKTRMAKLAVHPDAYIRPSPTSGTLGGVAKATRETIV 139

Query: 188 QAQAKKVDVLIIDTAGRLHNN 208
             +A   DV++++T G   + 
Sbjct: 140 LLEAAGYDVILVETVGVGQSE 160


>gi|312261108|dbj|BAJ33559.1| CC-NBS-LRR type resistance protein [Capsicum chinense]
          Length = 1328

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 38/165 (23%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRS--DIG 59
           SNQ+V+   L+        F     KL+E I  +       + +++++ DL ++   D+G
Sbjct: 111 SNQQVSDRKLNLSDDY---FLDIKEKLEETIETL-------EDLQKQIGDLGLQKHLDLG 160

Query: 60  VAVAQK-----IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
             +  +     +V+E  +K   + +  +R       LI ++L   S   N        V+
Sbjct: 161 KKLETRTPSTSLVDE--SKILGRMIEKER-------LIDRLLSSDSNGENL------TVV 205

Query: 115 LVVGVNGVGKTTVI------GKLSKKMSDAGLKVMLAAGDTFRSA 153
            +VG+ GVGKTT+        K+           +  A D FR  
Sbjct: 206 PIVGMGGVGKTTLAKIVYNDKKVKDHFDLKAWFCVSEAYDAFRIT 250


>gi|241889822|ref|ZP_04777120.1| ComG operon protein 1 [Gemella haemolysans ATCC 10379]
 gi|241863444|gb|EER67828.1| ComG operon protein 1 [Gemella haemolysans ATCC 10379]
          Length = 331

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 32/66 (48%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           V+  + ++ ++ + +    S+  N        +IL  G  G GK+T + KL+ ++++   
Sbjct: 109 VRIFINELEDVEYSIFEEDSEYINNLSKKANGLILFSGPTGSGKSTSLYKLASELANMNK 168

Query: 141 KVMLAA 146
           +V+   
Sbjct: 169 QVITVE 174


>gi|239637780|ref|ZP_04678744.1| ATP-binding ABC transporter protein [Staphylococcus warneri L37603]
 gi|239596629|gb|EEQ79162.1| ATP-binding ABC transporter protein [Staphylococcus warneri L37603]
          Length = 644

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 20/165 (12%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P++KP N + S   H I ++G NGVGKTT+I  ++++    G +V   A    +    D
Sbjct: 343 TPITKPINLEVSKGDH-IAIIGPNGVGKTTLIKTIAQRQRPLGGEVTFGAN--LQIGYYD 399

Query: 157 QLKIW--ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           Q +    +++T  D+V  +  +           +    + DV  I         + L   
Sbjct: 400 QKQAEFKSNKTILDYVWDQYPNMNEKDIRAVLGRFLFVQDDVKKIINDLSGGEKARLQLA 459

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTG-----QNALRQVEMFHA 254
           +  + R           +VL + + T       +  L Q     A
Sbjct: 460 LLMLQR----------DNVLILDEPTNHLDIDSKEMLEQALEHFA 494


>gi|241591922|ref|XP_002404032.1| 6-phosphofructo-2-kinase/fructose 2,6-bisphosphatase, putative
           [Ixodes scapularis]
 gi|215500320|gb|EEC09814.1| 6-phosphofructo-2-kinase/fructose 2,6-bisphosphatase, putative
           [Ixodes scapularis]
          Length = 468

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           PH+I +VG+   GKT +  KL++ ++  G++  +     +R  A +  +  
Sbjct: 38  PHIIAMVGLPARGKTYIAKKLTRYLNWIGIQTRVFNVGEYRRQATEAYRSH 88


>gi|156841249|ref|XP_001643999.1| hypothetical protein Kpol_1070p24 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114631|gb|EDO16141.1| hypothetical protein Kpol_1070p24 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 881

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 4/110 (3%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA--VAQKIVEELLTKRYAK 77
               +S  + +         +  +  +E LED +I S +GV    A++I  E++      
Sbjct: 534 KLPKSSESINKETLSEPEKEKSTEKTKEMLEDEIIDSLVGVDKAAAKQIFSEIVVHGDEV 593

Query: 78  DVSVQRVLYDVSELIHKMLM-PLSKP-FNWDFSHRPHVILVVGVNGVGKT 125
                  L      + + ++ P  +P            +L+ G  G GKT
Sbjct: 594 RWDDIAGLESAKASLKEAVVYPFLRPDLFRGLREPVRGMLLFGPPGTGKT 643


>gi|56460083|ref|YP_155364.1| membrane ATP-dependent Zn protease [Idiomarina loihiensis L2TR]
 gi|56179093|gb|AAV81815.1| Membrane ATP-dependent Zn proteases [Idiomarina loihiensis L2TR]
          Length = 648

 Score = 39.8 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 61/187 (32%), Gaps = 26/187 (13%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E  +K   KDV+      +    +   L   SK F       P  +L+VG  G GK
Sbjct: 146 KLMNEEQSKTTFKDVAGCDEAKEEVSELVDYLKDPSK-FQRLGGKIPKGVLMVGPPGTGK 204

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K +S        +   +                  +       S    +  +
Sbjct: 205 T----LLAKAISGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQ 245

Query: 185 AFKQA-QAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           A K A     +D L  D  GR     +          + ++L  +D    +  + V+ AT
Sbjct: 246 AKKSAPCIIFIDEL--DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 303

Query: 241 TGQNALR 247
              + L 
Sbjct: 304 NRPDVLD 310


>gi|302561516|ref|ZP_07313858.1| shikimate kinase [Streptomyces griseoflavus Tu4000]
 gi|302479134|gb|EFL42227.1| shikimate kinase [Streptomyces griseoflavus Tu4000]
          Length = 172

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           + PHV++V+GV G GKTT+   L+ +       V  A  D F   A
Sbjct: 2   NTPHVVVVMGVAGTGKTTIGPLLAARY-----GVPYAEADDFHPPA 42


>gi|21673660|ref|NP_661725.1| hypothetical protein CT0831 [Chlorobium tepidum TLS]
 gi|21646778|gb|AAM72067.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 515

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 5/133 (3%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +  K  +  V+ +    + ++ + +    +     +    +P +++  GV+G GK+T   
Sbjct: 295 VRAKVTSIRVAQESDEEEKAKTLAEHHSYIRLALGYTQPRKPMLLITYGVSGSGKSTWAA 354

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +L+      G   + +  +  R   ID L+  A +   D    E       +  +A   A
Sbjct: 355 RLADL---GGFIHIRSDVERKRLFGIDSLERSAGK-GFDIYTPEATQKTYDVMLDAASTA 410

Query: 190 QAKKVDVLIIDTA 202
            +     +I+D  
Sbjct: 411 LSAGF-PVIVDAT 422


>gi|315427938|dbj|BAJ49529.1| hypothetical protein HGMM_F08G03C28 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 454

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 14/132 (10%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
             V     +V  +    Y             SE +   +  + +     +   P V+ VV
Sbjct: 203 FAVETVMSLVATVAG-VYGVTRVSGLRKRGESETVLTGVEGIDREIGLMY---PSVVAVV 258

Query: 118 GVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTF-----RSAA----IDQLKIWADRTSA 167
           G +G G++T++ +L + ++S     VM +  DT      R A     +++L+        
Sbjct: 259 GPSGSGRSTLLARLSAHRLSAGDGVVMFSLHDTVEELRSRLAGLGCDVERLEQEGKLVLL 318

Query: 168 DFVCSEIGSDAA 179
             + S   +   
Sbjct: 319 TSIPSSDNTRHY 330


>gi|288905500|ref|YP_003430722.1| ABC transporter ATP-binding protein/permease [Streptococcus
           gallolyticus UCN34]
 gi|288732226|emb|CBI13791.1| putative ABC transporter, ATP-binding/permease protein
           [Streptococcus gallolyticus UCN34]
          Length = 589

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 25/115 (21%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
            AS     K  +  I         V +E E++   +D+     + +  +L  +   ++VS
Sbjct: 310 LASILQSAKSSLDRIF-------EVLDEPEEV---ADV----TEHLTHDLTGQVSFENVS 355

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            Q  + D          PL + FN D      V  +VG  G GKTT+I  L +  
Sbjct: 356 FQ-YVAD---------KPLIQNFNLDVKPGEMV-AIVGPTGAGKTTLINLLMRFY 399


>gi|240103204|ref|YP_002959513.1| Cobalamin biosynthesis amidotransferase, putative, containg
           CobQ/CobB/MinD/ParA nucleotide binding domain
           [Thermococcus gammatolerans EJ3]
 gi|239910758|gb|ACS33649.1| Cobalamin biosynthesis amidotransferase, putative, containg
           CobQ/CobB/MinD/ParA nucleotide binding domain
           [Thermococcus gammatolerans EJ3]
          Length = 247

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI++ G  G GKTT    LS  ++    +V+   GD +       L       +  +  
Sbjct: 2   AVIVMTGRGGAGKTTTTANLSTFLAGREYRVLAIDGDLYLPN----LGFHFGMDNVKYTV 57

Query: 172 SEIGSDAAALAYEAFKQAQAKKV 194
             +  D +     A  + +   V
Sbjct: 58  HSLLKDPSLDPEWAIYKHRETGV 80


>gi|167583012|ref|ZP_02375886.1| ClpA/B type protease [Burkholderia thailandensis TXDOH]
          Length = 887

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 74/210 (35%), Gaps = 38/210 (18%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++E+E +L            + + L  +   +D ++  +   V           +   N
Sbjct: 572 VKDEIETVL-----------NLRDLLGARVIGQDHALDAIAQRVR----------TATAN 610

Query: 105 WDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIW 161
            +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK  
Sbjct: 611 LEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKMITINMSEYQEAHSVSGLK-- 667

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                     S  G           +  +     V+++D   + H + + M         
Sbjct: 668 ---------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA 718

Query: 222 LKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           +   +       + L +L +  G  A+ Q 
Sbjct: 719 MDDAEGREIDFRNTLIILTSNVGSPAVMQA 748


>gi|15679187|ref|NP_276304.1| nucleotide-binding protein (putative ATPase) [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622283|gb|AAB85665.1| nucleotide-binding protein (putative ATPase) [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 276

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           ++    K        +  ++++ G  GVGK+TV  KL+++ S  G  V +   D 
Sbjct: 14  IMEQDVKIVRALSKIKHKIVVMSGKGGVGKSTVTVKLAEEFSRNGYSVCVLDADV 68


>gi|159903614|ref|YP_001550958.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888790|gb|ABX09004.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB
           [Prochlorococcus marinus str. MIT 9211]
          Length = 863

 Score = 39.8 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 22/132 (16%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITD----IISSRRLDDGVREELED-------LL 53
           K A      I +L    +     L+E  +     ++     +D + E +          L
Sbjct: 498 KAAELEFGVISQLQSKLSEKEDLLREENSSREKPLLREEVTEDDIAEVISKWTHIPVKKL 557

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           ++S++     +KI++ L  K   K +   + +  ++E I +    LS P+          
Sbjct: 558 VKSEV-----EKILD-LEEKLNRKVIGQPKAIKSITEAIQRSRTGLSDPY-----RPIAT 606

Query: 114 ILVVGVNGVGKT 125
            L +G  GVGKT
Sbjct: 607 FLFLGPTGVGKT 618


>gi|257875493|ref|ZP_05655146.1| UvrB/UvrC protein/AAA ATPase [Enterococcus casseliflavus EC20]
 gi|257809659|gb|EEV38479.1| UvrB/UvrC protein/AAA ATPase [Enterococcus casseliflavus EC20]
          Length = 754

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 80/219 (36%), Gaps = 41/219 (18%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLK-LKEGITDIISSRRLDDGVRE-------ELED-- 51
           ++++   E  ++ R           + + E  T +I+ + ++  V E       EL++  
Sbjct: 369 ASREEDFEKAAYYRDQINKLQKMKERQISEEETPVITEKDMEQIVEERTNIPVGELKEKE 428

Query: 52  --LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
              L          + + ++L  K   +D ++ +    V++ I +  + L K      S 
Sbjct: 429 QTQL----------KNLADDLKAKVIGQDEAIDK----VAKAIRRNRVGLGKQNRPIGS- 473

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
                L VG  GVGKT +  +L+      G +  +   D          +     + +  
Sbjct: 474 ----FLFVGPTGVGKTELAKQLA--YEMFGSEESMIRFDMS--------EYMEKHSVSKL 519

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           + S  G      A +  ++ +     ++++D   + H +
Sbjct: 520 IGSPPGYVGYEEAGQLTEKVRRNPYSLILLDEVEKAHPD 558


>gi|8250494|emb|CAB93625.1| FtsY protein [Mycoplasma hominis]
          Length = 117

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 19 KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
          +G + ++    E I ++ +   ++D+   E+LE++LI SDI + + Q I+ E   +   +
Sbjct: 19 EGLSKSNSSFNEHIKELQNKHNKIDEEFFEDLEEMLIMSDISIKLVQIIINECKKEVRNE 78

Query: 78 DVSVQRVLYDVSELIHKML 96
          +++  +++   +E+I   L
Sbjct: 79 NITDPKLI---NEIIADKL 94


>gi|21234086|ref|NP_639663.1| putative atp/GTP-binding protein [Streptomyces coelicolor A3(2)]
 gi|13620572|emb|CAC36611.1| putative ATP/GTP-binding protein [Streptomyces coelicolor A3(2)]
          Length = 228

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P  IL+ G+ G GKTT    L++ +  AG + +    + FR     +   +         
Sbjct: 52  PRAILMSGLQGSGKTT----LARALEAAGFRRLCPDEEMFR-----RYGHYGRDFPRGEF 102

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLI 198
                     +A E  ++      +V++
Sbjct: 103 RVREAPVLKDIALE-LQELLTAGHEVVV 129


>gi|242084262|ref|XP_002442556.1| hypothetical protein SORBIDRAFT_08g021880 [Sorghum bicolor]
 gi|241943249|gb|EES16394.1| hypothetical protein SORBIDRAFT_08g021880 [Sorghum bicolor]
          Length = 1037

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 34/175 (19%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +     V + + + ++  L+H++              +  VI +VG  G+GKTT    L+
Sbjct: 188 RVTRNPVGIDKPMEELLSLLHEVDGE---------PQQLRVISIVGFGGLGKTT----LA 234

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +           A  D+  +      + W     A      I     A+  +  +Q    
Sbjct: 235 R-----------AVYDSPHAKETFHCRAWVSTAGATSPEISISQRIKAVLRDILQQ---- 279

Query: 193 KVDVLIIDTAGRLHNNSILMA---GIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
              V+  DT     +++ L A         R L  +D         V  A  G N
Sbjct: 280 ---VVPKDTMEMDVDSNHLEASLKEYLSDKRYLIVIDDVQMDEWRTVNSAFLGSN 331


>gi|255715357|ref|XP_002553960.1| KLTH0E11132p [Lachancea thermotolerans]
 gi|238935342|emb|CAR23523.1| KLTH0E11132p [Lachancea thermotolerans]
          Length = 188

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           + +P VI++ G  G GK+T+  KL +        V    GD+   
Sbjct: 5   TSKPKVIVLAGTAGTGKSTIAAKLVEVYQSKHPDVEFLEGDSIHP 49


>gi|167816638|ref|ZP_02448318.1| adenylylsulfate kinase [Burkholderia pseudomallei 91]
          Length = 196

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            VI + G+ G GKTT    L++++ + G K ++  GD  RS 
Sbjct: 14  PVIWMTGLPGAGKTTTANALAERLLEDGAKAIVLDGDALRSG 55


>gi|148254461|ref|YP_001239046.1| arginine/ornithine transport system ATPase [Bradyrhizobium sp.
           BTAi1]
 gi|146406634|gb|ABQ35140.1| methylmalonyl-CoA mutase metallochaperone MeaB [Bradyrhizobium sp.
           BTAi1]
          Length = 330

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 19/145 (13%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             EL+  +L           +  P         GVGK+T I  L   +   G KV + A 
Sbjct: 44  ARELVQAVLPQTGHAIRVGITGSP---------GVGKSTTIDALGMHLIAQGHKVAVLAV 94

Query: 148 D--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           D  + R+          + +L             S      AA   EA    +A   DV+
Sbjct: 95  DPSSARTGGSILGDKTRMARLSHDEHAFIRPSPSSGTLGGVAAKTREAMLLCEAAGFDVI 154

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVL 222
           +++T G   + + +       + ++
Sbjct: 155 LVETVGIGQSETAVCDMTDFFLALM 179


>gi|103486770|ref|YP_616331.1| putative ABC transporter ATP-binding protein [Sphingopyxis
           alaskensis RB2256]
 gi|98976847|gb|ABF52998.1| ABC transporter related [Sphingopyxis alaskensis RB2256]
          Length = 670

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 12/157 (7%)

Query: 104 NWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           +  F+  P  I+ V+G NG GK+T+   ++    +      ++ GDT R   +DQ +   
Sbjct: 456 DLSFTLPPGGIVGVIGPNGAGKSTLFKLITG--QEQPDSGSISIGDTVRLGYVDQSRDAL 513

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D     +     G D  ++     +            +  G      +     G+  RV 
Sbjct: 514 DPNKNVWEEISGGHDMMSIGKHEMQTRAYVG----AFNFKGTDQQKKVGQLSGGERNRVH 569

Query: 223 KRLDPHAPHSVLQVLDATTGQN-----ALRQVEMFHA 254
                    +VL + + T   +     AL +     A
Sbjct: 570 MAKMLKQGGNVLLLDEPTNDLDTETLAALEEALENFA 606


>gi|28378960|ref|NP_785852.1| ABC transporter, ATP-binding and permease protein [Lactobacillus
           plantarum WCFS1]
 gi|254557165|ref|YP_003063582.1| ABC transporter, ATP-binding and permease protein [Lactobacillus
           plantarum JDM1]
 gi|300766710|ref|ZP_07076627.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308181170|ref|YP_003925298.1| ABC transporter, ATP-binding and permease protein [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|28271798|emb|CAD64703.1| ABC transporter, ATP-binding and permease protein [Lactobacillus
           plantarum WCFS1]
 gi|254046092|gb|ACT62885.1| ABC transporter, ATP-binding and permease protein [Lactobacillus
           plantarum JDM1]
 gi|300495810|gb|EFK30961.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308046661|gb|ADN99204.1| ABC transporter, ATP-binding and permease protein [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 629

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           L K +N D      V  +VG  G GKTT+I  L +     G  + L   DT
Sbjct: 401 LMKDYNLDVKRGQQV-AIVGPTGAGKTTIINLLERFYDIKGGSIKLKGTDT 450


>gi|110633191|ref|YP_673399.1| bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate
           kinase protein [Mesorhizobium sp. BNC1]
 gi|110284175|gb|ABG62234.1| adenylylsulfate kinase [Chelativorans sp. BNC1]
          Length = 640

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +++ +        + +   L   + +  + L    +        +P V+   G++G GK+
Sbjct: 424 LIDRVTNATVGAGM-ILHPLRRAANIHWQALDVTKESRATLKHQKPAVLWFTGLSGSGKS 482

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           TV   L KK+  AG    +  GD  R  
Sbjct: 483 TVANLLEKKLHAAGRHTYILDGDNVRHG 510


>gi|169796587|ref|YP_001714380.1| ATP-dependent helicase [Acinetobacter baumannii AYE]
 gi|301595477|ref|ZP_07240485.1| ATP-dependent helicase HrpA [Acinetobacter baumannii AB059]
 gi|332853354|ref|ZP_08434716.1| ATP-dependent helicase HrpA [Acinetobacter baumannii 6013150]
 gi|332867694|ref|ZP_08437783.1| ATP-dependent helicase HrpA [Acinetobacter baumannii 6013113]
 gi|169149514|emb|CAM87402.1| ATP-dependent helicase [Acinetobacter baumannii AYE]
 gi|332728679|gb|EGJ60044.1| ATP-dependent helicase HrpA [Acinetobacter baumannii 6013150]
 gi|332733778|gb|EGJ64929.1| ATP-dependent helicase HrpA [Acinetobacter baumannii 6013113]
          Length = 1285

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 75/227 (33%), Gaps = 45/227 (19%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E+E L  +S     V Q+  E L   +  +D+ V +    + E I               
Sbjct: 32  EIEKLFEQS--NAKVRQRF-ERLPKIKLNQDLPVTQYTDRLIEAI--------------- 73

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS- 166
             +  VI+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+    
Sbjct: 74  -QKHQVIIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGE 131

Query: 167 ---------ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSIL 211
                      F           L  +    A+          D +IID A     N   
Sbjct: 132 KLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYDTIIIDEAHERSLNIDF 191

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           + G       LK+L P  P   + V  AT     + +   +   A  
Sbjct: 192 IMGY------LKQLLPKRPDLKVIVTSATL---DVNRFSNYFNNAPI 229


>gi|160896903|ref|YP_001562485.1| cobalamin synthesis protein P47K [Delftia acidovorans SPH-1]
 gi|160362487|gb|ABX34100.1| cobalamin synthesis protein P47K [Delftia acidovorans SPH-1]
          Length = 384

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%)

Query: 112 HVILVVGVNGVGKTTVIG---------KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            V ++ G  G GKTT++          K++   ++ G        D  R+ + +Q+   +
Sbjct: 18  PVTILTGFLGSGKTTLLKRVLSESHGMKIAVIENEFG--EENIDTDILRTESKEQILQMS 75

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           +      +  ++      LA  A ++    + D ++I+T G    +   +A    M   +
Sbjct: 76  NGCICCTIREDLRETLQLLA--AKRRKGLVEFDRIVIETTGLA--DPGPVAQTFFMDDEI 131

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-TGLIMTKMD---GTARGGGLIPI 278
              + +   S+L ++DA      L   +      G    L ++K D      +   +  +
Sbjct: 132 --AETYLIDSILTLVDAKHANQQLDDRQEARRQVGFADQLFLSKTDLVSEDEKNALIHRL 189

Query: 279 VVTH-KIPVYFLGVGE----GINDLEPFV 302
              + + P+  +  GE     + DL  F 
Sbjct: 190 KHMNPRAPIRAVHFGEVSLNEVFDLRGFN 218


>gi|308811308|ref|XP_003082962.1| FtsH protease, putative (ISS) [Ostreococcus tauri]
 gi|116054840|emb|CAL56917.1| FtsH protease, putative (ISS) [Ostreococcus tauri]
          Length = 809

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 62/198 (31%), Gaps = 27/198 (13%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           ++G A    + +    K   KDV+       ++ E +  +  P  K +    +  PH  L
Sbjct: 299 NVGKATVSTLDKNAKNKIMFKDVAGCNEAKREIMEFVDFLKNP--KKYEALGAKIPHGAL 356

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VG  G GKT     L+K  +                A +  L I        FV     
Sbjct: 357 LVGPPGTGKT----LLAKATAGE--------------AGVPFLSISGSDFMEMFVGVGPS 398

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPH 231
                 A    ++     +D   ID  GR                 + ++L  +D     
Sbjct: 399 RVRDLFAQARAQKPSIIFIDE--IDAIGRQRGRGGFAGGNDERENTLNQLLVEMDGFGTK 456

Query: 232 SVLQVLDATTGQNALRQV 249
             + VL  T   + L + 
Sbjct: 457 EGVIVLAGTNRPDILDKA 474


>gi|83720142|ref|YP_443465.1| ClpA/B type protease [Burkholderia thailandensis E264]
 gi|167621165|ref|ZP_02389796.1| ClpA/B type protease [Burkholderia thailandensis Bt4]
 gi|83653967|gb|ABC38030.1| ClpA/B type protease [Burkholderia thailandensis E264]
          Length = 887

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 74/210 (35%), Gaps = 38/210 (18%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++E+E +L            + + L  +   +D ++  +   V           +   N
Sbjct: 572 VKDEIETVL-----------NLRDLLGARVIGQDHALDAIAQRVR----------TATAN 610

Query: 105 WDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIW 161
            +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK  
Sbjct: 611 LEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKMITINMSEYQEAHSVSGLK-- 667

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                     S  G           +  +     V+++D   + H + + M         
Sbjct: 668 ---------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA 718

Query: 222 LKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           +   +       + L +L +  G  A+ Q 
Sbjct: 719 MDDAEGREIDFRNTLIILTSNVGSPAVMQA 748


>gi|67470794|ref|XP_651360.1| phosphoribulokinase /uridine kinase family protein [Entamoeba
           histolytica HM-1:IMSS]
 gi|56468086|gb|EAL45974.1| phosphoribulokinase /uridine kinase family protein [Entamoeba
           histolytica HM-1:IMSS]
          Length = 543

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHK----MLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           EL  +     V+ Q     ++EL+ +     +  LSK      S    ++L+ G +  GK
Sbjct: 229 ELNKEMDVGYVNKQIAQKTINELMIESENYHVQQLSKLIEVIKSRPTQLVLIAGPSSSGK 288

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTF 150
           TT   KL   +   G   ++ + D +
Sbjct: 289 TTFAHKLGLGLQGVGYNPLVLSVDNY 314


>gi|53724298|ref|YP_104343.1| ClpA/B type protease [Burkholderia mallei ATCC 23344]
 gi|67640681|ref|ZP_00439479.1| type VI secretion ATPase, ClpV1 family [Burkholderia mallei GB8
           horse 4]
 gi|121599193|ref|YP_991406.1| ClpA/B type protease [Burkholderia mallei SAVP1]
 gi|251767424|ref|ZP_02267213.2| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           mallei PRL-20]
 gi|254175184|ref|ZP_04881845.1| ClpA/B type protease [Burkholderia mallei ATCC 10399]
 gi|254201418|ref|ZP_04907782.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           mallei FMH]
 gi|254206760|ref|ZP_04913111.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           mallei JHU]
 gi|52427721|gb|AAU48314.1| ClpA/B type protease [Burkholderia mallei ATCC 23344]
 gi|121228003|gb|ABM50521.1| ClpA/B type protease [Burkholderia mallei SAVP1]
 gi|147747312|gb|EDK54388.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           mallei FMH]
 gi|147752302|gb|EDK59368.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           mallei JHU]
 gi|160696229|gb|EDP86199.1| ClpA/B type protease [Burkholderia mallei ATCC 10399]
 gi|238521448|gb|EEP84899.1| type VI secretion ATPase, ClpV1 family [Burkholderia mallei GB8
           horse 4]
 gi|243062827|gb|EES45013.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           mallei PRL-20]
          Length = 897

 Score = 39.8 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 38/210 (18%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++E+E +L            + + L  +   +D ++  +   V           +   N
Sbjct: 582 VKDEIETVL-----------NLRDLLGARVIGQDHALGAIAQRVR----------TATAN 620

Query: 105 WDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIW 161
            +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK  
Sbjct: 621 LEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKLITINMSEYQEAHSVSGLK-- 677

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                     S  G           +  +     V+++D   + H + + M         
Sbjct: 678 ---------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA 728

Query: 222 LKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           +   +       + L +L +  G +A+ Q 
Sbjct: 729 MDDAEGREIDFRNTLIILTSNVGSSAVMQA 758


>gi|312261122|dbj|BAJ33566.1| CC-NBS-LRR type resistance protein [Capsicum chacoense]
          Length = 1315

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 40/166 (24%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRS--DIG 59
           +NQ+V+   L+        F     KL+E I  +       + +++++ DL ++   D+G
Sbjct: 104 NNQQVSDLKLNLSDDY---FLDIKEKLEETIETL-------EDLQKQIGDLGLQKHLDLG 153

Query: 60  VAVAQK-----IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
             +  +     +V+E  +K   + +  +R       LI ++L   S   N        V+
Sbjct: 154 KKLETRTPSTSLVDE--SKILGRMIEKER-------LIDRLLSSDSNGENL------TVV 198

Query: 115 LVVGVNGVGKTTVIGKL----SKKMSDAGLKVMLAAG---DTFRSA 153
            +VG+ GVGKTT + K+     K     GLK         D FR  
Sbjct: 199 PIVGMGGVGKTT-LAKIVYNDKKVKDHFGLKAWFCVSEAYDAFRIT 243


>gi|282889754|ref|ZP_06298293.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500328|gb|EFB42608.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 493

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 11/141 (7%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILV-VGVNGV-GKTTVIGKLSKKMSDAGLKVM 143
            +++++I K +  +   F+ +F   P   L  VG+ G  GKTT    +   +    L   
Sbjct: 74  KEITQIICKNVAEVEGRFSANFYQMPSQELFIVGITGTNGKTTTSFLVKYLLEQLNLPCG 133

Query: 144 LAAG-----DTFRSAAIDQL-KIWADRTSADFVCSEIGSDA-AALAYEAFKQAQAKKVDV 196
           L          +R  A      + ++      +  +    A   +   A  Q + + +D 
Sbjct: 134 LIGTIEYILGRYRYKASHTTPDVHSNHHMLREMVHQGCQAAVMEVTSHALDQKRVEHIDY 193

Query: 197 LIIDTAG--RLHNNSILMAGI 215
            I       + H +       
Sbjct: 194 DIAIYTNLTQDHLDYHQNMEC 214


>gi|238927153|ref|ZP_04658913.1| M41 family endopeptidase FtsH [Selenomonas flueggei ATCC 43531]
 gi|238884935|gb|EEQ48573.1| M41 family endopeptidase FtsH [Selenomonas flueggei ATCC 43531]
          Length = 650

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 70/220 (31%), Gaps = 27/220 (12%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K    DV+         E + + L    K FN   +  P  +L+ G  G GKT     
Sbjct: 140 KKKVTFADVAGADEAKQELEEVVEFLKTPDK-FNELGARIPKGVLLFGPPGTGKT----L 194

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K ++                 A  Q    +     +       S    L  +A K A 
Sbjct: 195 LAKAVAGE---------------AGVQFFTISGSDFVEMFVGVGASRVRDLFEQAKKAAP 239

Query: 191 AKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +  ID  GR     +          + ++L  +D  A +  + ++ AT   + L 
Sbjct: 240 CIVF-IDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFASNEGIIIIAATNRPDVLD 298

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
              +         +++ K D   RG   I  V T   P+ 
Sbjct: 299 PALLRPGRFD-RQIVVDKPD--VRGREAILKVHTKGKPIA 335


>gi|256819881|ref|YP_003141160.1| Mrp/Nbp35 family ATP-binding protein [Capnocytophaga ochracea DSM
           7271]
 gi|256581464|gb|ACU92599.1| Mrp/Nbp35 family ATP-binding protein [Capnocytophaga ochracea DSM
           7271]
          Length = 373

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 21/114 (18%)

Query: 58  IGVAVAQKIV---EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK------------P 102
           +     Q IV   +E++      + S+Q       E++  +   +++            P
Sbjct: 25  VDSGAVQNIVVFGDEVVVDVVINNPSLQAKKRTEVEVMKAIHGEVNEKAKVVVNVKVIAP 84

Query: 103 FNWDFSHRP-----HVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
              +   +P     ++I V  G  GVGK+TV   L+  ++  G KV +   D +
Sbjct: 85  EVTEIKGKPIPGIQNIIAVASGKGGVGKSTVTANLAAALAKMGFKVGVLDADVY 138


>gi|215484047|ref|YP_002326272.1| ATP-dependent helicase HrpA [Acinetobacter baumannii AB307-0294]
 gi|213986307|gb|ACJ56606.1| ATP-dependent helicase HrpA [Acinetobacter baumannii AB307-0294]
          Length = 1294

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 75/227 (33%), Gaps = 45/227 (19%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E+E L  +S     V Q+  E L   +  +D+ V +    + E I               
Sbjct: 41  EIEKLFEQS--NAKVRQRF-ERLPKIKLNQDLPVTQYTDRLIEAI--------------- 82

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS- 166
             +  VI+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+    
Sbjct: 83  -QKHQVIIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGE 140

Query: 167 ---------ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSIL 211
                      F           L  +    A+          D +IID A     N   
Sbjct: 141 KLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYDTIIIDEAHERSLNIDF 200

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           + G       LK+L P  P   + V  AT     + +   +   A  
Sbjct: 201 IMGY------LKQLLPKRPDLKVIVTSATL---DVNRFSNYFNNAPI 238


>gi|213156300|ref|YP_002318720.1| ATP-dependent helicase HrpA [Acinetobacter baumannii AB0057]
 gi|213055460|gb|ACJ40362.1| ATP-dependent helicase HrpA [Acinetobacter baumannii AB0057]
          Length = 1294

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 75/227 (33%), Gaps = 45/227 (19%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E+E L  +S     V Q+  E L   +  +D+ V +    + E I               
Sbjct: 41  EIEKLFEQS--NAKVRQRF-ERLPKIKLNQDLPVTQYTDRLIEAI--------------- 82

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS- 166
             +  VI+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+    
Sbjct: 83  -QKHQVIIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGE 140

Query: 167 ---------ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSIL 211
                      F           L  +    A+          D +IID A     N   
Sbjct: 141 KLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYDTIIIDEAHERSLNIDF 200

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           + G       LK+L P  P   + V  AT     + +   +   A  
Sbjct: 201 IMGY------LKQLLPKRPDLKVIVTSATL---DVNRFSNYFNNAPI 238


>gi|167747156|ref|ZP_02419283.1| hypothetical protein ANACAC_01870 [Anaerostipes caccae DSM 14662]
 gi|317473640|ref|ZP_07932929.1| uridine kinase [Anaerostipes sp. 3_2_56FAA]
 gi|167654116|gb|EDR98245.1| hypothetical protein ANACAC_01870 [Anaerostipes caccae DSM 14662]
 gi|316898930|gb|EFV20955.1| uridine kinase [Anaerostipes sp. 3_2_56FAA]
          Length = 551

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           V     + EE+        + VQ  L +      K+L  ++     D      V+L+ G 
Sbjct: 244 VDTVGALNEEITNGDINNLILVQEALQE------KLLADIASKIVDDGKK---VVLIAGP 294

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +  GKTT   +L+ ++   GL     + D +
Sbjct: 295 SSSGKTTFSHRLAIQLQIDGLTPHPISLDDY 325


>gi|160941849|ref|ZP_02089176.1| hypothetical protein CLOBOL_06745 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435346|gb|EDP13113.1| hypothetical protein CLOBOL_06745 [Clostridium bolteae ATCC
           BAA-613]
          Length = 269

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           H +     K    ++  R  V+ V G  G GKTTV  KL+K ++D    V L   D
Sbjct: 7   HSIFSREEKGNCQEYQDRGGVLAVWGSPGSGKTTVAVKLAKYLADRKRNVSLLLCD 62


>gi|126438408|ref|YP_001060634.1| ClpA/B type protease [Burkholderia pseudomallei 668]
 gi|126217901|gb|ABN81407.1| ClpA/B type protease [Burkholderia pseudomallei 668]
          Length = 889

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 73/209 (34%), Gaps = 36/209 (17%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++E+E +L            + + L  +   +D      L  +++ +      L  P  
Sbjct: 574 VKDEIETVL-----------NLRDLLGARVIGQD----HALGAIAQRVRTATANLEDP-- 616

Query: 105 WDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWA 162
              +    V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK   
Sbjct: 617 ---NKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKLITINMSEYQEAHSVSGLK--- 669

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                    S  G           +  +     V+++D   + H + + M         +
Sbjct: 670 --------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGAM 721

Query: 223 KRLDPHAPH--SVLQVLDATTGQNALRQV 249
              +       + L +L +  G +A+ Q 
Sbjct: 722 DDAEGREIDFRNTLIILTSNVGSSAVMQA 750


>gi|312261116|dbj|BAJ33563.1| CC-NBS-LRR type resistance protein [Capsicum chinense]
          Length = 1317

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 38/165 (23%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRS--DIG 59
           SNQ+V+   L+        F     KL+E I  +       + +++++ DL ++   D+G
Sbjct: 104 SNQQVSDRKLNLSDDY---FLDIKEKLEETIETL-------EDLQKQIGDLGLQKHLDLG 153

Query: 60  VAVAQK-----IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
             +  +     +V+E  +K   + +  +R       LI ++L   S   N        V+
Sbjct: 154 KKLETRTPSTSLVDE--SKILGRMIEKER-------LIDRLLSSDSNGENL------TVV 198

Query: 115 LVVGVNGVGKTTVI------GKLSKKMSDAGLKVMLAAGDTFRSA 153
            +VG+ GVGKTT+        K+           +  A D FR  
Sbjct: 199 PIVGMGGVGKTTLAKIVYNDKKVKDHFDLKAWFCVSEAYDAFRIT 243


>gi|93006245|ref|YP_580682.1| ATP-dependent helicase HrpA [Psychrobacter cryohalolentis K5]
 gi|92393923|gb|ABE75198.1| ATP-dependent helicase HrpA [Psychrobacter cryohalolentis K5]
          Length = 1421

 Score = 39.8 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 17/108 (15%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS---- 166
             VI+V G  G GKTT + KL+  ++  G++  +      R AA       A+       
Sbjct: 138 NQVIIVAGETGSGKTTQLPKLA-MLAGRGIRGQIGHTQPRRLAARSVANRIAEELGEQLG 196

Query: 167 ------ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTA 202
                   F           L  +    A+          D +IID A
Sbjct: 197 NTVSFKIRFNEQGTAQSVVKLMTDGILLAELGHDRFLSKYDTIIIDEA 244


>gi|312261120|dbj|BAJ33565.1| CC-NBS-LRR type resistance protein [Capsicum baccatum]
          Length = 1315

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 40/166 (24%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRS--DIG 59
           +NQ+V+   L+        F     KL+E I  +       + +++++ DL ++   D+G
Sbjct: 104 NNQQVSDLKLNLSDDY---FLDIKEKLEETIETL-------EDLQKQIGDLGLQKHLDLG 153

Query: 60  VAV-----AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
             +     +  +V+E  +K   + +  +R       LI ++L   S   N        V+
Sbjct: 154 KKLESRTPSTSLVDE--SKILGRMIEKER-------LIDRLLSSDSNGENL------TVV 198

Query: 115 LVVGVNGVGKTTVIGKL----SKKMSDAGLKVMLAAG---DTFRSA 153
            +VG+ GVGKTT + K+     K     GLK         D FR  
Sbjct: 199 PIVGMGGVGKTT-LAKIVYNDKKVKDHFGLKAWFCVSEAYDAFRIT 243


>gi|237814020|ref|YP_002898471.1| type VI secretion ATPase, ClpV1 family [Burkholderia pseudomallei
           MSHR346]
 gi|237503921|gb|ACQ96239.1| type VI secretion ATPase, ClpV1 family [Burkholderia pseudomallei
           MSHR346]
          Length = 889

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 38/210 (18%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++E+E +L            + + L  +   +D ++  +   V           +   N
Sbjct: 574 VKDEIETVL-----------NLRDLLGARVIGQDHALGAIAQRVR----------TATAN 612

Query: 105 WDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIW 161
            +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK  
Sbjct: 613 LEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKLITINMSEYQEAHSVSGLK-- 669

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                     S  G           +  +     V+++D   + H + + M         
Sbjct: 670 ---------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA 720

Query: 222 LKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           +   +       + L +L +  G +A+ Q 
Sbjct: 721 MDDAEGREIDFRNTLIILTSNVGSSAVMQA 750


>gi|221066956|ref|ZP_03543061.1| LAO/AO transport system ATPase [Comamonas testosteroni KF-1]
 gi|220711979|gb|EED67347.1| LAO/AO transport system ATPase [Comamonas testosteroni KF-1]
          Length = 329

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 19/141 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + S          L+  +L    K F    S         GV GVGK+T I  L   + +
Sbjct: 25  ESSRADHREQADGLLTALLPHTGKAFRLGIS---------GVPGVGKSTFIEALGLFLIE 75

Query: 138 AGLKVMLAAGD---TFRSAAI-------DQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GL+V + A D   T    +I       +QL +  +        S      A    EA  
Sbjct: 76  KGLRVAVLAIDPSSTVSGGSILGDKTRMEQLSMRLEAYIRPSPSSGTLGGVAEKTREAML 135

Query: 188 QAQAKKVDVLIIDTAGRLHNN 208
             +A   DV+I++T G   + 
Sbjct: 136 VCEAAGYDVVIVETVGVGQSE 156


>gi|167895130|ref|ZP_02482532.1| adenylylsulfate kinase [Burkholderia pseudomallei 7894]
          Length = 198

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            VI + G+ G GKTT    L++++ + G K ++  GD  RS 
Sbjct: 14  PVIWMTGLPGAGKTTTANALAERLLEDGAKAIVLDGDALRSG 55


>gi|76811406|ref|YP_335003.1| protease associated ATPase ClpB [Burkholderia pseudomallei 1710b]
 gi|134283186|ref|ZP_01769887.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           pseudomallei 305]
 gi|226198222|ref|ZP_03793793.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|254180453|ref|ZP_04887051.1| ClpA/B type protease [Burkholderia pseudomallei 1655]
 gi|254261527|ref|ZP_04952581.1| ClpA/B type protease [Burkholderia pseudomallei 1710a]
 gi|76580859|gb|ABA50334.1| protease associated ATPase ClpB [Burkholderia pseudomallei 1710b]
 gi|134245381|gb|EBA45474.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           pseudomallei 305]
 gi|184210992|gb|EDU08035.1| ClpA/B type protease [Burkholderia pseudomallei 1655]
 gi|225929742|gb|EEH25758.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|254220216|gb|EET09600.1| ClpA/B type protease [Burkholderia pseudomallei 1710a]
          Length = 889

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 38/210 (18%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++E+E +L            + + L  +   +D ++  +   V           +   N
Sbjct: 574 VKDEIETVL-----------NLRDLLGARVIGQDHALGAIAQRVR----------TATAN 612

Query: 105 WDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIW 161
            +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK  
Sbjct: 613 LEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKLITINMSEYQEAHSVSGLK-- 669

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                     S  G           +  +     V+++D   + H + + M         
Sbjct: 670 ---------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA 720

Query: 222 LKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           +   +       + L +L +  G +A+ Q 
Sbjct: 721 MDDAEGREIDFRNTLIILTSNVGSSAVMQA 750


>gi|170591817|ref|XP_001900666.1| Probable pre-mRNA splicing factor ATP-dependent RNA helicase mog-1
           [Brugia malayi]
 gi|158591818|gb|EDP30421.1| Probable pre-mRNA splicing factor ATP-dependent RNA helicase mog-1,
           putative [Brugia malayi]
          Length = 1133

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 16/110 (14%)

Query: 63  AQKIVEE--LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           A  ++E   +      K +  QR    V  +  KML  ++            V+++VG  
Sbjct: 416 ASHLIESGAVSDFALKKSIKEQREYLPVFAVRQKMLSVIAD---------NSVVIIVGET 466

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTSAD 168
           G GKTT   +L++ + + G       G T   R AA+   K  A+    D
Sbjct: 467 GSGKTT---QLAQYLLEDGYANFGLIGCTQPRRVAAMSVAKRVAEEMGVD 513


>gi|167825043|ref|ZP_02456514.1| adenylylsulfate kinase [Burkholderia pseudomallei 9]
 gi|167911766|ref|ZP_02498857.1| adenylylsulfate kinase [Burkholderia pseudomallei 112]
 gi|226199908|ref|ZP_03795458.1| adenylyl-sulfate kinase [Burkholderia pseudomallei Pakistan 9]
 gi|254191332|ref|ZP_04897836.1| adenylylsulfate kinase [Burkholderia pseudomallei Pasteur 52237]
 gi|157939004|gb|EDO94674.1| adenylylsulfate kinase [Burkholderia pseudomallei Pasteur 52237]
 gi|225927964|gb|EEH24001.1| adenylyl-sulfate kinase [Burkholderia pseudomallei Pakistan 9]
          Length = 206

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            VI + G+ G GKTT    L++++ + G K ++  GD  RS 
Sbjct: 14  PVIWMTGLPGAGKTTTANALAERLLEDGAKAIVLDGDALRSG 55


>gi|321476615|gb|EFX87575.1| hypothetical protein DAPPUDRAFT_306543 [Daphnia pulex]
          Length = 617

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 13/116 (11%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           ++ + PHVI + G+   GKT +  KLS+ ++  G+   +     +R  A   LK      
Sbjct: 163 NYVNTPHVIAMCGLPARGKTYIAKKLSRYLNWIGINTKVFNLGEYRRMATP-LKSH---- 217

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQ------AKKVDVLIIDTAGRLHNNSILMAGI 215
              F   E     +  A  A    +          +V + D          L+  I
Sbjct: 218 --HFFKQENVEAMSVRAQCALDALEDVCKWLEAGGEVGVFDATNTTFERRQLIREI 271


>gi|290958950|ref|YP_003490132.1| ABC transporter ATP-binding protein [Streptomyces scabiei 87.22]
 gi|260648476|emb|CBG71587.1| putative ABC-transporter ATP-binding subunit [Streptomyces scabiei
           87.22]
          Length = 343

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V  V+G NG GKTT +  L+  +   G +  +   D  R A
Sbjct: 36  TVYGVLGPNGAGKTTTVKMLATLLRPDGGEAHVFGHDVVREA 77


>gi|260549993|ref|ZP_05824208.1| ATP-dependent helicase HrpA [Acinetobacter sp. RUH2624]
 gi|260406985|gb|EEX00463.1| ATP-dependent helicase HrpA [Acinetobacter sp. RUH2624]
          Length = 1294

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 80/243 (32%), Gaps = 48/243 (19%)

Query: 32  ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL 91
           +  +   ++ D     E+E L  +S     V Q+  E L   +  +D+ V +    + E 
Sbjct: 28  LNRLRKDKKADTS---EIEKLFEQS--NAKVRQRF-ERLPKIKLNQDLPVSQYADRLIEA 81

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           I                 +  VI+V G  G GKTT + +++  ++  GL  M+      R
Sbjct: 82  I----------------QKHQVIIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRR 124

Query: 152 SAAIDQLKIWADRTS----------ADFVCSEIGSDAAALAYEAFKQAQAKK------VD 195
            AA    +  A+               F           L  +    A+          D
Sbjct: 125 LAARSVSQRIAEEVGEKLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYD 184

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
            +IID A     N   + G       LK+L P  P   + V  AT     + +   +   
Sbjct: 185 TIIIDEAHERSLNIDFIMGY------LKQLLPKRPDLKVIVTSATL---DVNRFSNYFND 235

Query: 256 AGT 258
           A  
Sbjct: 236 API 238


>gi|257865866|ref|ZP_05645519.1| UvrB/UvrC protein/AAA ATPase [Enterococcus casseliflavus EC30]
 gi|257872200|ref|ZP_05651853.1| UvrB/UvrC protein/AAA ATPase [Enterococcus casseliflavus EC10]
 gi|257799800|gb|EEV28852.1| UvrB/UvrC protein/AAA ATPase [Enterococcus casseliflavus EC30]
 gi|257806364|gb|EEV35186.1| UvrB/UvrC protein/AAA ATPase [Enterococcus casseliflavus EC10]
          Length = 754

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 80/219 (36%), Gaps = 41/219 (18%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLK-LKEGITDIISSRRLDDGVRE-------ELED-- 51
           ++++   E  ++ R           + + E  T +I+ + ++  V E       EL++  
Sbjct: 369 ASREEDFEKAAYYRDQINKLQKMKERQISEEETPVITEKDMEQIVEERTNIPVGELKEKE 428

Query: 52  --LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
              L          + + ++L  K   +D ++ +    V++ I +  + L K      S 
Sbjct: 429 QTQL----------KNLADDLKAKVIGQDEAIDK----VAKAIRRNRVGLGKQNRPIGS- 473

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
                L VG  GVGKT +  +L+      G +  +   D          +     + +  
Sbjct: 474 ----FLFVGPTGVGKTELAKQLA--YEMFGSEESMIRFDMS--------EYMEKHSVSKL 519

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           + S  G      A +  ++ +     ++++D   + H +
Sbjct: 520 IGSPPGYVGYEEAGQLTEKVRRNPYSLILLDEVEKAHPD 558


>gi|167720441|ref|ZP_02403677.1| adenylylsulfate kinase [Burkholderia pseudomallei DM98]
          Length = 193

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            VI + G+ G GKTT    L++++ + G K ++  GD  RS 
Sbjct: 14  PVIWMTGLPGAGKTTTANALAERLLEDGAKAIVLDGDALRSG 55


>gi|145596121|ref|YP_001160418.1| LAO/AO transport system ATPase [Salinispora tropica CNB-440]
 gi|145305458|gb|ABP56040.1| LAO/AO transport system ATPase [Salinispora tropica CNB-440]
          Length = 345

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 11/151 (7%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L+ +  A D      L  + E   + L PL       ++ +  V+ + G  GVGK+T   
Sbjct: 23  LVDRARAGDPRAVARLITLVESGDETL-PLIAAAFAPYAGQAQVVGLTGSPGVGKSTTTN 81

Query: 130 KLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKIWADRTSAD-------FVCSEIGSDAA 179
           +L + +   G +V + A D        AI   ++     + D                 +
Sbjct: 82  ELVRALRSRGHRVGVLAIDPSSPFTGGAILGDRVRMQDHAIDPGVYIRSMSSRGHLGGLS 141

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           A   +A +  +    DV++++T G       
Sbjct: 142 AATPQAVRVLEGAGCDVVLVETVGVGQAEVE 172


>gi|92115196|ref|YP_575124.1| ATP-dependent metalloprotease FtsH [Chromohalobacter salexigens DSM
           3043]
 gi|91798286|gb|ABE60425.1| membrane protease FtsH catalytic subunit [Chromohalobacter
           salexigens DSM 3043]
          Length = 655

 Score = 39.8 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 55/173 (31%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +  E +   L   SK F       P  +L+VG  G GKT     L+K +S 
Sbjct: 158 DVAGCDEAKEEVEELVDFLKDPSK-FQRLGGQIPRGVLMVGPPGTGKT----LLAKAISG 212

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A KQA      + 
Sbjct: 213 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKQAPCIIF-ID 256

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR   + +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 257 EIDAVGRHRGSGMGGGHDEREQTLNQLLVEMDGFEANDGIIVIAATNRPDVLD 309


>gi|332751266|gb|EGJ81669.1| cell division protein ftsY domain protein [Shigella flexneri
           2747-71]
          Length = 165

 Score = 39.8 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 4/40 (10%), Positives = 14/40 (35%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR 40
           ++ ++       +  +L +    T   L  G   +   ++
Sbjct: 113 IAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKK 152


>gi|327399211|ref|YP_004340080.1| LAO/AO transport system ATPase [Hippea maritima DSM 10411]
 gi|327181840|gb|AEA34021.1| LAO/AO transport system ATPase [Hippea maritima DSM 10411]
          Length = 334

 Score = 39.8 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 89/262 (33%), Gaps = 43/262 (16%)

Query: 64  QKIVEEL---LTKRYAK-----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           +K+ E+L     +  AK     +   ++      EL+  +L           S       
Sbjct: 4   KKLKEDLLNGKRRALAKAITLIESKNEKHKKYAKELLEGILPYTGNSIRIGIS------- 56

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS-------AAIDQLKIWADRTSAD 168
             GV GVGK+T I      + + G KV + A D               +++  + R  A 
Sbjct: 57  --GVPGVGKSTFIEAFGLYLIEKGHKVAVLAVDPSSQITGGSVLGDKTRMEELSRRQEAF 114

Query: 169 FVCSEIGSDAAALAYEAFKQ---AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
              S  G     +A  + +     +A   DV+II+T G   +   + + +      L   
Sbjct: 115 IRPSPSGDSLGGVARRSRESIFLCEAAGYDVIIIETVGVGQSEISVASMVDMF---LLMQ 171

Query: 226 DPHAPHS-------VLQVLDATTGQNA----LRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
            P+A          +++V DA     A    L+  E+          I+ K D   +   
Sbjct: 172 LPNAGDELQGIKRGIMEVADAIIINKADSDNLKVAELAKKQLENALSILKKQDKDWQTPV 231

Query: 275 LI-PIVVTHKIPVYFLGVGEGI 295
           ++   +    I V F  + E  
Sbjct: 232 ILVSALEKRGIDVVFSTI-EKY 252


>gi|288947734|ref|YP_003445117.1| Cobyrinic acid ac-diamide synthase [Allochromatium vinosum DSM 180]
 gi|288898250|gb|ADC64085.1| Cobyrinic acid ac-diamide synthase [Allochromatium vinosum DSM 180]
          Length = 213

 Score = 39.8 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 114 ILVVGV--NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           IL++G    G GK+T+   L+  ++  G+ VML   D  R+A+    +  +        C
Sbjct: 2   ILLLGGEKGGTGKSTLAVNLAVWLATKGVDVMLVDTDHQRTASNFIDRRNSQNDLPRIHC 61

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            E   +      +      A + D +I+D  GR    
Sbjct: 62  VEKYGNVLDAVRD-----LAGRYDEVIVDAGGRDSEE 93


>gi|167920719|ref|ZP_02507810.1| protease associated ATPase ClpB [Burkholderia pseudomallei BCC215]
          Length = 889

 Score = 39.8 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 38/210 (18%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++E+E +L            + + L  +   +D ++  +   V           +   N
Sbjct: 574 VKDEIETVL-----------NLRDLLGARVIGQDHALGAIAQRVR----------TATAN 612

Query: 105 WDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIW 161
            +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK  
Sbjct: 613 LEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKLITINMSEYQEAHSVSGLK-- 669

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                     S  G           +  +     V+++D   + H + + M         
Sbjct: 670 ---------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA 720

Query: 222 LKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           +   +       + L +L +  G +A+ Q 
Sbjct: 721 MDDAEGREIDFRNTLIILTSNVGSSAVMQA 750


>gi|91200894|emb|CAJ73950.1| similar to Succinoglycan biosynthesis transport protein [Candidatus
           Kuenenia stuttgartiensis]
          Length = 850

 Score = 39.8 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 115 LVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           ++VG    G GKTTVI KL+  M+  GL+V++   D +
Sbjct: 502 MMVGSATPGEGKTTVITKLAVSMAKGGLRVIMVDADVY 539


>gi|85713627|ref|ZP_01044617.1| cobyrinic acid a,c-diamide synthase [Nitrobacter sp. Nb-311A]
 gi|85699531|gb|EAQ37398.1| cobyrinic acid a,c-diamide synthase [Nitrobacter sp. Nb-311A]
          Length = 207

 Score = 39.8 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT+   ++  ++  G  V L   D  RSA+      WA+  + +F   E+  +  +
Sbjct: 7   GVGKTTIAVCVAAALARRGHDVALVDSDPQRSAS-----QWAEPGNLEFPVYEMALEQMS 61

Query: 181 LAYEAFKQAQAKKVDVLIIDTA 202
           ++  A ++ ++ +  V+IIDTA
Sbjct: 62  VSAWA-QEVRSIEAGVVIIDTA 82


>gi|95931256|ref|ZP_01313975.1| type II secretion system protein E [Desulfuromonas acetoxidans DSM
           684]
 gi|95132692|gb|EAT14372.1| type II secretion system protein E [Desulfuromonas acetoxidans DSM
           684]
          Length = 563

 Score = 39.8 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 22/119 (18%)

Query: 57  DIGVAVA-------QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
           D+ V V+       ++IV  LL K  + +V     +   +EL+ ++   +SKP       
Sbjct: 264 DVDVRVSSLPTAFGERIVLRLLDK--SNNVLSLEDIGMENELLTQLQKQISKPHG----- 316

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---FRSAAIDQLKIWADRT 165
              V LV G  G GKTT +   +        +  +   +    ++ A + Q+++ +   
Sbjct: 317 ---VFLVTGPTGSGKTTTL--YAALSRLNDREKNIITVEDPIEYQLAGVGQIQVNSKIN 370


>gi|124384627|ref|YP_001027693.1| ClpA/B type protease [Burkholderia mallei NCTC 10229]
 gi|126450804|ref|YP_001082665.1| ClpA/B type protease [Burkholderia mallei NCTC 10247]
 gi|126451777|ref|YP_001067885.1| ClpA/B type protease [Burkholderia pseudomallei 1106a]
 gi|217424856|ref|ZP_03456353.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           pseudomallei 576]
 gi|242317327|ref|ZP_04816343.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           pseudomallei 1106b]
 gi|254190433|ref|ZP_04896941.1| ClpA/B type protease [Burkholderia pseudomallei Pasteur 52237]
 gi|254198615|ref|ZP_04905036.1| ClpA/B type protease [Burkholderia pseudomallei S13]
 gi|254300687|ref|ZP_04968132.1| ClpA/B type protease [Burkholderia pseudomallei 406e]
 gi|254357249|ref|ZP_04973523.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           mallei 2002721280]
 gi|124292647|gb|ABN01916.1| ClpA/B type protease [Burkholderia mallei NCTC 10229]
 gi|126225419|gb|ABN88959.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           pseudomallei 1106a]
 gi|126243674|gb|ABO06767.1| ClpA/B type protease [Burkholderia mallei NCTC 10247]
 gi|148026313|gb|EDK84398.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           mallei 2002721280]
 gi|157810646|gb|EDO87816.1| ClpA/B type protease [Burkholderia pseudomallei 406e]
 gi|157938109|gb|EDO93779.1| ClpA/B type protease [Burkholderia pseudomallei Pasteur 52237]
 gi|169655355|gb|EDS88048.1| ClpA/B type protease [Burkholderia pseudomallei S13]
 gi|217392312|gb|EEC32337.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           pseudomallei 576]
 gi|242140566|gb|EES26968.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           pseudomallei 1106b]
          Length = 889

 Score = 39.8 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 38/210 (18%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++E+E +L            + + L  +   +D ++  +   V           +   N
Sbjct: 574 VKDEIETVL-----------NLRDLLGARVIGQDHALGAIAQRVR----------TATAN 612

Query: 105 WDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIW 161
            +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK  
Sbjct: 613 LEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKLITINMSEYQEAHSVSGLK-- 669

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                     S  G           +  +     V+++D   + H + + M         
Sbjct: 670 ---------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA 720

Query: 222 LKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           +   +       + L +L +  G +A+ Q 
Sbjct: 721 MDDAEGREIDFRNTLIILTSNVGSSAVMQA 750


>gi|281424584|ref|ZP_06255497.1| phosphoribulokinase family protein [Prevotella oris F0302]
 gi|281401255|gb|EFB32086.1| phosphoribulokinase family protein [Prevotella oris F0302]
          Length = 586

 Score = 39.8 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 15/121 (12%)

Query: 32  ITDIISSRRLDDGVREELE--DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           + +II   ++ +  +E     ++L     GV       E + T            L +VS
Sbjct: 253 LPEIIRQDKMFEIFKEHHRWQEIL-----GVRTVGDFNEAVTTGH-------ATDLINVS 300

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           E + +  + L             ++L+ G +  GKTT   +LS ++   G+K +  + D 
Sbjct: 301 EALQEKKIALIAD-EIANRKGVKLVLLAGPSSSGKTTTCKRLSVQLLANGIKPLQISLDD 359

Query: 150 F 150
           +
Sbjct: 360 Y 360


>gi|254502051|ref|ZP_05114202.1| LAO/AO transport system ATPase [Labrenzia alexandrii DFL-11]
 gi|222438122|gb|EEE44801.1| LAO/AO transport system ATPase [Labrenzia alexandrii DFL-11]
          Length = 331

 Score = 39.8 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 19/142 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +           EL+ ++L    K      +         GV G GK+T I      ++ 
Sbjct: 32  ESKKPEHRKIARELVQEVLPQTGKALRVGIT---------GVPGAGKSTTIDTFGSNLTA 82

Query: 138 AGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           AG KV + A D  + R+          + QL +  +        +      AA   E   
Sbjct: 83  AGQKVAVLAVDPSSTRTGGSILGDKTRMAQLAVDRNAFIRPSPSAGTLGGVAAKTRETML 142

Query: 188 QAQAKKVDVLIIDTAGRLHNNS 209
             +A   DV++++T G   + +
Sbjct: 143 LCEAAGFDVILVETVGIGQSET 164


>gi|53720710|ref|YP_109696.1| protease associated ATPase ClpB [Burkholderia pseudomallei K96243]
 gi|52211124|emb|CAH37112.1| protease associated ATPase ClpB [Burkholderia pseudomallei K96243]
          Length = 889

 Score = 39.8 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 38/210 (18%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++E+E +L            + + L  +   +D ++  +   V           +   N
Sbjct: 574 VKDEIETVL-----------NLRDLLGARVIGQDHALGAIAQRVR----------TATAN 612

Query: 105 WDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIW 161
            +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK  
Sbjct: 613 LEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKLITINMSEYQEAHSVSGLK-- 669

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                     S  G           +  +     V+++D   + H + + M         
Sbjct: 670 ---------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA 720

Query: 222 LKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           +   +       + L +L +  G +A+ Q 
Sbjct: 721 MDDAEGREIDFRNTLIILTSNVGSSAVMQA 750


>gi|326523327|dbj|BAJ88704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 575

 Score = 39.8 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 36/191 (18%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKT 125
           +    ++        + + +  E + +++  L    N+    +  P  +L+ G  G GKT
Sbjct: 276 KRRRPRKQQVGFDDVQGVDEAKEELVEIVSCLRGSLNYKKLGARLPRGVLLAGPPGTGKT 335

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
                L+K ++                A I    + A     +       +    L  EA
Sbjct: 336 ----LLAKAVAGE--------------AGIPFFSVSASEF-VEMFVGRGAARVRDLFKEA 376

Query: 186 FKQAQAKKVDVLIID-------TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            + A +    ++ ID       + GR  N+         + ++L  +D       + V+ 
Sbjct: 377 KEAAPS----IIFIDELDAVGGSRGRSFNDER----DQTLNQLLTEMDGFDSDVKVIVMA 428

Query: 239 ATTGQNALRQV 249
           AT    AL   
Sbjct: 429 ATNRPKALDSA 439


>gi|153955005|ref|YP_001395770.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855447|ref|YP_002472569.1| hypothetical protein CKR_2104 [Clostridium kluyveri NBRC 12016]
 gi|146347863|gb|EDK34399.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569171|dbj|BAH07155.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 185

 Score = 39.8 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 14/69 (20%)

Query: 15 RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG-----------VAVA 63
          +KL +    T   L E +T ++S +++++   +EL DL   +D+              + 
Sbjct: 4  KKLDRRIRKTKQSLFEALTKLMSKKKINNITVKELTDL---ADVNRSTFYHYYRDIFDMV 60

Query: 64 QKIVEELLT 72
           KI  EL+ 
Sbjct: 61 DKIRTELID 69


>gi|67483002|ref|XP_656795.1| phosphoribulokinase /uridine kinase family protein [Entamoeba
           histolytica HM-1:IMSS]
 gi|56474016|gb|EAL51410.1| phosphoribulokinase /uridine kinase family protein [Entamoeba
           histolytica HM-1:IMSS]
          Length = 579

 Score = 39.8 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 16/104 (15%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHK------MLMPLSKPFNWD---------- 106
            +KI+E   T            + D+++ I K      M+M   +               
Sbjct: 250 TKKIIENYKTSNKVAQAVGIECIGDLNKRIIKGDKTTIMMMENRQDMEIAQIAEDAIEKI 309

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +    +I + G +  GKTT   KL  ++   G+  ++ + D +
Sbjct: 310 KTRGVKLISIAGPSASGKTTFSKKLGVQLKLRGITPVVLSTDDY 353


>gi|324502045|gb|ADY40902.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 [Ascaris
           suum]
          Length = 906

 Score = 39.8 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 14/111 (12%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
            A   +  E +      K +  QR    V  +  KML         +      V+++VG 
Sbjct: 191 FATHMENTEAVSDFALEKSIKEQREYLPVFAVRQKML---------NVIRDNSVVIIVGE 241

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTSAD 168
            G GKTT   +L++ + + G       G T   R AA+   K  ++    +
Sbjct: 242 TGSGKTT---QLAQYLLEDGYGNAGMIGCTQPRRVAAMSVAKRVSEEMGVE 289


>gi|320527752|ref|ZP_08028922.1| peptide-methionine (S)-S-oxide reductase [Solobacterium moorei
           F0204]
 gi|320131917|gb|EFW24477.1| peptide-methionine (S)-S-oxide reductase [Solobacterium moorei
           F0204]
          Length = 889

 Score = 39.8 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 14/114 (12%)

Query: 38  SRRLDDGVREELE-DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
            + L D   EE + + L++    V+ A  +   ++ K+  KD+ +      +SE +H+  
Sbjct: 562 QKSLYDAFSEETQWEKLLK----VSFASDL-NRMIEKKEPKDLIM------LSEALHEKK 610

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           + +          R  +IL+ G +  GKTT   +L  ++   GL  +    D +
Sbjct: 611 IAMIAEQIQSAKKR--IILIAGPSSSGKTTFAKRLCIQLKVIGLNPLYLGTDDY 662


>gi|294679637|gb|ADF29629.1| Pi36 [Oryza sativa Indica Group]
          Length = 1056

 Score = 39.8 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 19/117 (16%)

Query: 26  LKLKEGITDIISSRR----LDDGVREELEDLLIRSDI--GVAVAQKIVEELLTK------ 73
            +L + +  +    +    + D + +E+E  L+  D   G      IV  +  +      
Sbjct: 101 RRLGKQVKKLFKKTKHRVTIADAI-QEMEKKLLEIDARHGRYPVDNIV--IPARPTPIDP 157

Query: 74  ---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTT 126
                 K  +    + +  + + KML    +  N + S+R   I+ VVG+ G+GKTT
Sbjct: 158 HILNIEKMANNLVGIDEPRDELIKMLFQHERDNNLNTSNRKTKIVYVVGMGGLGKTT 214


>gi|196166477|gb|ACG70797.1| arsenite acitvated ATPase [Escherichia coli]
          Length = 539

 Score = 39.8 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ +++D G  V L   D    AA     +     +       
Sbjct: 309 IMLMGKGGVGKTTMTAAIAVRLADMGFDVHLTTSD---PAAHLSTTLNGSLKNLQVSRIN 365

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    K  D+   D AG+      L +   + I V + 
Sbjct: 366 PHDETERYRQHVLE---TKGRDL---DEAGKRLLEEDLRSPCTEEIAVFQA 410


>gi|254296961|ref|ZP_04964414.1| adenylylsulfate kinase [Burkholderia pseudomallei 406e]
 gi|157807224|gb|EDO84394.1| adenylylsulfate kinase [Burkholderia pseudomallei 406e]
          Length = 204

 Score = 39.8 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            VI + G+ G GKTT    L++++ + G K ++  GD  RS 
Sbjct: 12  PVIWMTGLPGAGKTTTANALAERLLEDGAKAIVLDGDALRSG 53


>gi|154497023|ref|ZP_02035719.1| hypothetical protein BACCAP_01316 [Bacteroides capillosus ATCC
           29799]
 gi|150273422|gb|EDN00550.1| hypothetical protein BACCAP_01316 [Bacteroides capillosus ATCC
           29799]
          Length = 312

 Score = 39.8 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            ++L+ G +G GKTT   KL +++   G+     + D +
Sbjct: 46  PIVLLSGPSGSGKTTTALKLEEELEKRGISTHTISMDNY 84


>gi|20093517|ref|NP_613364.1| GTPase or GTP-binding protein [Methanopyrus kandleri AV19]
 gi|19886355|gb|AAM01294.1| Predicted GTPase or GTP-binding protein [Methanopyrus kandleri
           AV19]
          Length = 385

 Score = 39.8 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 17/112 (15%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR----SAAIDQLKIWADRTS- 166
            V +V+G    GKTT++  ++ ++ + GLKV +   D  +      A+  L I  D    
Sbjct: 38  PVCMVIGPQDSGKTTLVTFIANELVERGLKVGIVDADVGQSDVGPPAVVSLGIVEDTVHD 97

Query: 167 ------------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
                            S                A A+  DV++IDT+G +H
Sbjct: 98  LSEVEMRHGYFVGSITPSGHLLQTTVGTRRMVDLALAEGTDVVLIDTSGMVH 149


>gi|311744001|ref|ZP_07717807.1| LAO/AO transport system ATPase [Aeromicrobium marinum DSM 15272]
 gi|311313131|gb|EFQ83042.1| LAO/AO transport system ATPase [Aeromicrobium marinum DSM 15272]
          Length = 321

 Score = 39.8 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 85/256 (33%), Gaps = 43/256 (16%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHK---MLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           V+EL+           R +  +  L+      L  +++      +   HV+ + G  GVG
Sbjct: 8   VDELVETACGDGPGKPRAVARLISLVEDDSPALRDVARAL-VPRTTGAHVVGLTGSPGVG 66

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDT---FRSAAI--DQLKIWADRTSADFVCSEIGSDA 178
           K+T    L   +  A   V + A D    F   A+  D++++    T        + S  
Sbjct: 67  KSTSTSALVTALRAADHTVGVLAVDPTSPFSGGALLGDRVRMTEHATDPRVFIRSMASRG 126

Query: 179 A-----ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                 A A +A +   A   DV++++T G   +                        + 
Sbjct: 127 HLGGLSAAAPQALRVLDAAGCDVVLVETVGVGQSEVE---------------IAGLADTT 171

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG------GLIPIVVTH----K 283
           L +L    G + ++  +      G    ++ K D             ++ +        K
Sbjct: 172 LVLLAPGMG-DGIQAAKAGILEIG-DLFVVNKADRDGAATTRREVRAMLSMTDRVDGAWK 229

Query: 284 IPVYFL--GVGEGIND 297
            P+       G+G+++
Sbjct: 230 PPITLTVATTGQGVDE 245


>gi|225425815|ref|XP_002264955.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1078

 Score = 39.8 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 87/263 (33%), Gaps = 70/263 (26%)

Query: 18  TKGFASTSLKL----KEGITDIISSRRLDDGVREELEDLLIRSDIGV------------- 60
            +    +  +        + DI+   +  +          I +D  V             
Sbjct: 302 KQSMNKSRQRFWELAGSKLGDILGVEKTAEQ---------IDADTAVVGEEGEVDFKEDA 352

Query: 61  AVAQKIV--EELLTKRYAKDVSVQRV---LYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
             AQ +   E +     +K ++ QR    +Y V E + +++                V++
Sbjct: 353 KFAQHLKKDEAVSEFAKSKTLAEQRQYLPIYSVREELLQVIRE------------NQVVV 400

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTSADF---- 169
           VVG  G GKTT   +L++ + + G       G T   R AA+   K  ++    +     
Sbjct: 401 VVGETGSGKTT---QLTQYLHEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMETELGDKV 457

Query: 170 ---VCSEIGSDAA---------ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
              +  E  +             L  E  K ++  K  V+++D A     N+        
Sbjct: 458 GYAIRFEDVTGPNTKIKYMTDGVLMRETLKDSELDKYRVVVMDEAHERSLNTD------V 511

Query: 218 MIRVLKRLDPHAPHSVLQVLDAT 240
           +  +LK++        L V  AT
Sbjct: 512 LFGILKKVVAQRRDFKLIVTSAT 534


>gi|222106990|ref|YP_002547781.1| ATP-dependent Clp protease ATP-binding subunit [Agrobacterium vitis
           S4]
 gi|221738169|gb|ACM39065.1| ATP-dependent Clp protease ATP-binding subunit [Agrobacterium vitis
           S4]
          Length = 903

 Score = 39.8 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 67/190 (35%), Gaps = 23/190 (12%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           + +D  +  A+ +   L  K   +D +++R    + + +      LS P        P V
Sbjct: 559 LLAD-QIESAKSLDMRLKEKVIGQDAALER----IGDAMRAARAGLSDP-----RRPPAV 608

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            ++VG++G GKT     L+  M           G +     I+  +   +   +  + + 
Sbjct: 609 FMLVGMSGTGKTETALTLADLMY----------GGSQHLTTINMSEFKEEHKVSMLLGAP 658

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAP 230
            G           +  + +   VL++D   + H    +         M+R  +  D    
Sbjct: 659 PGYVGYGEGGVLTEAVRRRPYGVLLLDEIDKAHPGVQDIFYQVFDKGMLRDGEGRDVDFR 718

Query: 231 HSVLQVLDAT 240
           ++ + +   T
Sbjct: 719 NTTIFMTANT 728


>gi|153855581|ref|ZP_01996697.1| hypothetical protein DORLON_02715 [Dorea longicatena DSM 13814]
 gi|149752002|gb|EDM61933.1| hypothetical protein DORLON_02715 [Dorea longicatena DSM 13814]
          Length = 373

 Score = 39.8 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLT-KRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
            V + LE+ L   D    V Q ++E L       + ++     +       +    + + 
Sbjct: 144 SVWKILEEQLKTGD--YKV-QHVLENLRVCYVAVQGITDGAGKFYNINTPEEYRKIIPEK 200

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                   P V+  V  +G GKTT + KL  K+   GLK+ +   D  R
Sbjct: 201 IKEKAQQTP-VVSFVAYSGTGKTTFLEKLIPKLKAYGLKIAIVKHDGHR 248


>gi|41055967|ref|NP_957302.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Danio rerio]
 gi|29791997|gb|AAH50514.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Danio rerio]
          Length = 522

 Score = 39.8 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+   K +
Sbjct: 26  TNSPTVIVLVGLPARGKTYISKKLTRYLNWIGVPTKVFNLGVYRREAVQSYKSY 79


>gi|294054330|ref|YP_003547988.1| LAO/AO transport system ATPase [Coraliomargarita akajimensis DSM
           45221]
 gi|293613663|gb|ADE53818.1| LAO/AO transport system ATPase [Coraliomargarita akajimensis DSM
           45221]
          Length = 322

 Score = 39.8 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 71/192 (36%), Gaps = 34/192 (17%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             EL+ ++L           +         GV G GK+T I  L   +   G KV + A 
Sbjct: 40  AKELMKRLLPHTGGSIRVGLT---------GVPGAGKSTTIEALGMYLCKEGKKVAVLAV 90

Query: 148 D---TFRSAAIDQ----LKIWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVL 197
           D   +    +I      ++      +A    S  G+    +A    EA    +A   DV+
Sbjct: 91  DPSSSVHGGSILGDKTRMEDLCREENAFIRPSPSGNSLGGVAARTREALLICEAAGYDVV 150

Query: 198 IIDTAGRLHNNSI-----------LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           I++T G   + +             +AG G  ++ +K+       ++  V++   G N +
Sbjct: 151 IVETVGVGQSETEVRTMTDFFLLLQIAGAGDELQGIKKGVIELADAI--VVNKADGDNVV 208

Query: 247 --RQVEMFHAVA 256
             RQ ++ +   
Sbjct: 209 RARQAKVEYTRV 220


>gi|302898482|ref|XP_003047858.1| hypothetical protein NECHADRAFT_72601 [Nectria haematococca mpVI
            77-13-4]
 gi|256728789|gb|EEU42145.1| hypothetical protein NECHADRAFT_72601 [Nectria haematococca mpVI
            77-13-4]
          Length = 2268

 Score = 39.8 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 68   EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-----LVVGVNGV 122
            E L   +  ++++    L +V + +  ++  L   +  +   +P V      + +G  G 
Sbjct: 1550 EALTKSKAYRELNCLIGLQEVKDALKMLMDTLKTNYQRELDEQPLVEFSLNKVFLGSPGT 1609

Query: 123  GKTTVIGKLSKKMSDAGL 140
            GKTTV    +K ++D GL
Sbjct: 1610 GKTTVAKLYAKILTDLGL 1627


>gi|210609832|ref|ZP_03288139.1| hypothetical protein CLONEX_00323 [Clostridium nexile DSM 1787]
 gi|210152759|gb|EEA83765.1| hypothetical protein CLONEX_00323 [Clostridium nexile DSM 1787]
          Length = 518

 Score = 39.8 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           + +  +  + +++  +L+     PLSKP       R H I +VG NG+GKTT
Sbjct: 315 FKQGRTPGKYIFETKDLVIGYNEPLSKPLTLSME-RGHKIALVGANGIGKTT 365


>gi|54024335|ref|YP_118577.1| putative kinase [Nocardia farcinica IFM 10152]
 gi|54015843|dbj|BAD57213.1| putative kinase [Nocardia farcinica IFM 10152]
          Length = 171

 Score = 39.8 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           P V+++ GV G GKTTV  +L+  +      V  A GD F  AA
Sbjct: 8   PRVVVM-GVTGSGKTTVGTRLAAAL-----GVPFAEGDDFHPAA 45


>gi|67640790|ref|ZP_00439584.1| adenylyl-sulfate kinase [Burkholderia mallei GB8 horse 4]
 gi|121600462|ref|YP_993681.1| adenylylsulfate kinase [Burkholderia mallei SAVP1]
 gi|124384195|ref|YP_001028858.1| adenylylsulfate kinase [Burkholderia mallei NCTC 10229]
 gi|126440385|ref|YP_001059700.1| adenylylsulfate kinase [Burkholderia pseudomallei 668]
 gi|126449439|ref|YP_001081231.1| adenylylsulfate kinase [Burkholderia mallei NCTC 10247]
 gi|126454924|ref|YP_001066984.1| adenylylsulfate kinase [Burkholderia pseudomallei 1106a]
 gi|134277327|ref|ZP_01764042.1| adenylylsulfate kinase [Burkholderia pseudomallei 305]
 gi|167003824|ref|ZP_02269604.1| adenylyl-sulfate kinase [Burkholderia mallei PRL-20]
 gi|167739435|ref|ZP_02412209.1| adenylylsulfate kinase [Burkholderia pseudomallei 14]
 gi|167846550|ref|ZP_02472058.1| adenylylsulfate kinase [Burkholderia pseudomallei B7210]
 gi|167903516|ref|ZP_02490721.1| adenylylsulfate kinase [Burkholderia pseudomallei NCTC 13177]
 gi|217421228|ref|ZP_03452733.1| adenylyl-sulfate kinase [Burkholderia pseudomallei 576]
 gi|242314505|ref|ZP_04813521.1| adenylyl-sulfate kinase [Burkholderia pseudomallei 1106b]
 gi|254178701|ref|ZP_04885356.1| adenylylsulfate kinase [Burkholderia mallei ATCC 10399]
 gi|254184300|ref|ZP_04890890.1| adenylylsulfate kinase [Burkholderia pseudomallei 1655]
 gi|254195909|ref|ZP_04902335.1| adenylylsulfate kinase [Burkholderia pseudomallei S13]
 gi|254199319|ref|ZP_04905685.1| adenylylsulfate kinase [Burkholderia mallei FMH]
 gi|254205632|ref|ZP_04911984.1| adenylylsulfate kinase [Burkholderia mallei JHU]
 gi|254258274|ref|ZP_04949328.1| adenylyl-sulfate kinase [Burkholderia pseudomallei 1710a]
 gi|254357788|ref|ZP_04974061.1| adenylylsulfate kinase [Burkholderia mallei 2002721280]
 gi|121229272|gb|ABM51790.1| adenylylsulfate kinase [Burkholderia mallei SAVP1]
 gi|124292215|gb|ABN01484.1| adenylyl-sulfate kinase [Burkholderia mallei NCTC 10229]
 gi|126219878|gb|ABN83384.1| adenylyl-sulfate kinase [Burkholderia pseudomallei 668]
 gi|126228566|gb|ABN92106.1| adenylylsulfate kinase [Burkholderia pseudomallei 1106a]
 gi|126242309|gb|ABO05402.1| adenylyl-sulfate kinase [Burkholderia mallei NCTC 10247]
 gi|134250977|gb|EBA51056.1| adenylylsulfate kinase [Burkholderia pseudomallei 305]
 gi|147748915|gb|EDK55989.1| adenylylsulfate kinase [Burkholderia mallei FMH]
 gi|147753075|gb|EDK60140.1| adenylylsulfate kinase [Burkholderia mallei JHU]
 gi|148026915|gb|EDK84936.1| adenylylsulfate kinase [Burkholderia mallei 2002721280]
 gi|160699740|gb|EDP89710.1| adenylylsulfate kinase [Burkholderia mallei ATCC 10399]
 gi|169652654|gb|EDS85347.1| adenylylsulfate kinase [Burkholderia pseudomallei S13]
 gi|184214831|gb|EDU11874.1| adenylylsulfate kinase [Burkholderia pseudomallei 1655]
 gi|217396640|gb|EEC36657.1| adenylyl-sulfate kinase [Burkholderia pseudomallei 576]
 gi|238521577|gb|EEP85027.1| adenylyl-sulfate kinase [Burkholderia mallei GB8 horse 4]
 gi|242137744|gb|EES24146.1| adenylyl-sulfate kinase [Burkholderia pseudomallei 1106b]
 gi|243060689|gb|EES42875.1| adenylyl-sulfate kinase [Burkholderia mallei PRL-20]
 gi|254216963|gb|EET06347.1| adenylyl-sulfate kinase [Burkholderia pseudomallei 1710a]
          Length = 206

 Score = 39.8 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            VI + G+ G GKTT    L++++ + G K ++  GD  RS 
Sbjct: 14  PVIWMTGLPGAGKTTTANALAERLLEDGAKAIVLDGDALRSG 55


>gi|320093941|ref|ZP_08025772.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979124|gb|EFW10636.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 283

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 71/204 (34%), Gaps = 31/204 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI-WADRTSADFVC 171
           V+ ++G NGVGKTT++  L   ++    +V +   D  ++ A    K+    ++  D   
Sbjct: 32  VVCLLGPNGVGKTTLVENLLGSLAPTNGRVRVFGTDPRQAGAGFWAKVGLVQQSWTDHAK 91

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN-NSILMAGIGKMIRVLKRLDPHAP 230
             +      +       A+       ++D  G     +S L    G   R +        
Sbjct: 92  WRVKDQLEWIRSVQLTAAERVSTVAEVLDAVGLSDKADSRLSRLSGGQRRTIDFAAALLA 151

Query: 231 HSVLQVLD-ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
              L +LD  TTG + + +            LI+ ++D  A       IV+T        
Sbjct: 152 SPELLILDEPTTGLDPVSKAR-------LHDLILARVDEDA------TIVMTTH------ 192

Query: 290 GVGEGINDLEPFVAKDFSAVITGC 313
                  DL    A+  ++ +   
Sbjct: 193 -------DLSE--AERLASRVLIM 207


>gi|314934120|ref|ZP_07841483.1| ABC transporter, ATP-binding protein [Staphylococcus caprae C87]
 gi|313653231|gb|EFS16990.1| ABC transporter, ATP-binding protein [Staphylococcus caprae C87]
          Length = 645

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 20/187 (10%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +    DV   R L    +       P+++P N +     H I V+G NGVGKTT+I  +
Sbjct: 323 ERNTGNDVMHIRDLKIGYD------SPITQPINIEVFKGDH-IAVIGPNGVGKTTLIKTI 375

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIW--ADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +       L   +  G   +    DQ +    +++T  D+V  +              + 
Sbjct: 376 AN--KQDKLAGEITFGANLQIGYYDQKQAEFKSNKTILDYVWDQYSHMNEKDVRAVLGRF 433

Query: 190 QAKKVDV--LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              + DV  +I D +G       L   + +   VL   +P     +         +  L 
Sbjct: 434 LFVQEDVKKIINDLSGGEKARLQLALLMLQKDNVLILDEPTNHLDI-------DSKEMLE 486

Query: 248 QVEMFHA 254
           Q      
Sbjct: 487 QALKHFE 493


>gi|313114589|ref|ZP_07800097.1| ATPase family [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623053|gb|EFQ06500.1| ATPase family [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 769

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 53/142 (37%), Gaps = 16/142 (11%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  L  +   K +     ++ V++ I +    LS         RP   + VG  GVGKT 
Sbjct: 469 LANLEGELKKKIIGQDEAVHLVAQAIKRSRADLSG------RRRPASFIFVGPTGVGKTE 522

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           ++ +L+ ++ D    ++            D  +       +  + S  G      A +  
Sbjct: 523 LVKQLANQLFDGPDPLIRL----------DMSEYMEKYAVSRMIGSPPGYVGYEEAGQLT 572

Query: 187 KQAQAKKVDVLIIDTAGRLHNN 208
           ++ + +   V++ D   + H +
Sbjct: 573 EKVRRRPYSVVLFDEIEKAHPD 594


>gi|294679626|gb|ADF29624.1| Pi36 [Oryza sativa Indica Group]
          Length = 1056

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 19/117 (16%)

Query: 26  LKLKEGITDIISSRR----LDDGVREELEDLLIRSDI--GVAVAQKIVEELLTK------ 73
            +L + +  +    +    + D + +E+E  L+  D   G      IV  +  +      
Sbjct: 101 RRLGKQVKKLFKKTKHRVTIADAI-QEMEKKLLEIDARHGRYPVDNIV--IPARPTPIDP 157

Query: 74  ---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTT 126
                 K  +    + +    + KML    +  N + S+R   I+ VVG+ G+GKTT
Sbjct: 158 RILNIEKMANNLVGIDEPRNELIKMLSQHERDNNLNTSNRKTKIVYVVGMGGLGKTT 214


>gi|326317511|ref|YP_004235183.1| LAO/AO transport system ATPase [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374347|gb|ADX46616.1| LAO/AO transport system ATPase [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 340

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 45/130 (34%), Gaps = 19/130 (14%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-- 148
           L+  +L    K F    S         GV GVGK+T I  L   +   G +V +   D  
Sbjct: 45  LLTALLPHTGKAFRLGLS---------GVPGVGKSTFIEALGLYLIAQGHRVAVLTIDPS 95

Query: 149 -TFRSAAIDQLKIWADRTSA-------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            +    +I   K   +R S            S      A    EA    +A   D++I++
Sbjct: 96  SSVSGGSILGDKTRMERLSVHEQAYIRPSPSSGTLGGVAEKTREAMLVCEAAGYDIVIVE 155

Query: 201 TAGRLHNNSI 210
           T G     + 
Sbjct: 156 TVGVGQGETA 165


>gi|237733438|ref|ZP_04563919.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383473|gb|EEO33564.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 640

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 16/167 (9%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              +   H  L  G  G GKTTV   L+K ++  G           ++  + +     D 
Sbjct: 32  IKENRISHAYLFAGPRGTGKTTVAKLLAKALNCTGENPPCDQCPNCKAITVGE---HPDV 88

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              D   +    +   L  +        K  V IID          +          L +
Sbjct: 89  IEIDAASNNGVDEVRDLIDKVKYAPINGKYKVYIID---------EVHMMSTGAFNALLK 139

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL----IMTKMD 267
                P  ++ VL  T     L  +           +    I+++++
Sbjct: 140 TLEEPPAHIVFVLATTEPHKILPTIISRCQRFDFKKVENHDIISRLE 186


>gi|167896109|ref|ZP_02483511.1| protease associated ATPase ClpB [Burkholderia pseudomallei 7894]
          Length = 889

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 38/210 (18%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++E+E +L            + + L  +   +D ++  +   V           +   N
Sbjct: 574 VKDEIETVL-----------NLRDLLGARVIGQDHALGAIAQRVR----------TATAN 612

Query: 105 WDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIW 161
            +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK  
Sbjct: 613 LEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKLITINMSEYQEAHSVSGLK-- 669

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                     S  G           +  +     V+++D   + H + + M         
Sbjct: 670 ---------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA 720

Query: 222 LKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           +   +       + L +L +  G +A+ Q 
Sbjct: 721 MDDAEGREIDFRNTLIILTSNVGSSAVMQA 750


>gi|153956472|ref|YP_001397237.1| hypothetical protein CKL_3889 [Clostridium kluyveri DSM 555]
 gi|219856776|ref|YP_002473898.1| hypothetical protein CKR_3433 [Clostridium kluyveri NBRC 12016]
 gi|146349330|gb|EDK35866.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219570500|dbj|BAH08484.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 271

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            + +      V+ V G  G GKTTV  KL+K ++D    V+L   D
Sbjct: 19  LDTESDKGAQVLAVWGSPGCGKTTVAVKLAKYLADRKKNVVLLLCD 64


>gi|167647305|ref|YP_001684968.1| hypothetical protein Caul_3343 [Caulobacter sp. K31]
 gi|167349735|gb|ABZ72470.1| protein of unknown function DUF59 [Caulobacter sp. K31]
          Length = 369

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 50/129 (38%), Gaps = 14/129 (10%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV- 117
           GV VAQ     +LT + A+ V+  R    V+E     L+P   P     +H  HVI V  
Sbjct: 74  GVDVAQ----VVLTAQAAEGVTRARKGAKVAEDKQAKLVP--PPEAEKPAHVKHVIAVAS 127

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G  GVGK+TV   L+   +  GL+V L   D +  +A             D   S     
Sbjct: 128 GKGGVGKSTVATNLACAFAAQGLRVGLLDADVYGPSA-------PRMMGVDGEPSFEDGK 180

Query: 178 AAALAYEAF 186
              L     
Sbjct: 181 LQPLVAHGI 189


>gi|311279524|ref|YP_003941755.1| arsenite-activated ATPase ArsA [Enterobacter cloacae SCF1]
 gi|308748719|gb|ADO48471.1| arsenite-activated ATPase ArsA [Enterobacter cloacae SCF1]
          Length = 583

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 10/125 (8%)

Query: 101 KPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
                D +   H  I+++G  GVGKTT+   ++ +++D G  V L   D    AA     
Sbjct: 316 SELVDDIARSEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAAHLSTT 372

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +                +              K  D+   D AG+      L +   + I
Sbjct: 373 LNGSLNHLQVSKINPHDETERYRQHVLA---TKGRDL---DEAGKRLLEEDLRSPCTEEI 426

Query: 220 RVLKR 224
            V + 
Sbjct: 427 AVFQA 431


>gi|304438341|ref|ZP_07398282.1| LAO/AO transport system ATPase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368707|gb|EFM22391.1| LAO/AO transport system ATPase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 313

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRT--- 165
           +V+ + G  G GK+T+  KL+K+    G  V + A D    F   AI   +I  +     
Sbjct: 44  YVLGITGPPGAGKSTMTDKLAKEYRKRGKTVGIIAVDPTSPFSGGAILGDRIRMNDLTLD 103

Query: 166 -SADFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNN 208
                           L++   +A K   A   DV+ ++T G   + 
Sbjct: 104 EGVFIRSMGTRGSLGGLSHKTADAVKAMDAFGKDVIFVETVGVGQSE 150


>gi|283797118|ref|ZP_06346271.1| conserved hypothetical protein [Clostridium sp. M62/1]
 gi|291075535|gb|EFE12899.1| conserved hypothetical protein [Clostridium sp. M62/1]
          Length = 270

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           W+      ++ V G  G GKTT   KL+  ++     V L   D
Sbjct: 20  WEPEKENRMLAVWGSPGSGKTTTAVKLAAHLAGKKRDVALLLCD 63


>gi|53725668|ref|YP_102419.1| adenylylsulfate kinase [Burkholderia mallei ATCC 23344]
 gi|76809462|ref|YP_334183.1| adenylylsulfate kinase [Burkholderia pseudomallei 1710b]
 gi|52429091|gb|AAU49684.1| adenylylsulfate kinase [Burkholderia mallei ATCC 23344]
 gi|76578915|gb|ABA48390.1| adenylylsulfate kinase [Burkholderia pseudomallei 1710b]
          Length = 204

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            VI + G+ G GKTT    L++++ + G K ++  GD  RS 
Sbjct: 12  PVIWMTGLPGAGKTTTANALAERLLEDGAKAIVLDGDALRSG 53


>gi|239982352|ref|ZP_04704876.1| transport system kinase [Streptomyces albus J1074]
 gi|291454197|ref|ZP_06593587.1| transport system kinase [Streptomyces albus J1074]
 gi|291357146|gb|EFE84048.1| transport system kinase [Streptomyces albus J1074]
          Length = 329

 Score = 39.8 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 32/215 (14%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +V +    R      +  ++   S  +  ++  L+       +   +V+ + G  GVGK+
Sbjct: 7   LVAQAREGRPRAVARLISLVEGASPQLRDVMAALA-----PLTGNAYVVGLTGSPGVGKS 61

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKI----WADRTSADFVCSEIGSDA 178
           T    L      AG +V + A D        A+   +I     A                
Sbjct: 62  TTTSALVSAYRAAGKRVAVLAVDPSSPFSGGALLGDRIRMSDHASDPGVYIRSMATRGHL 121

Query: 179 AALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
             LA+   +A +   A   D+++++T G   +                 +   A  SV+ 
Sbjct: 122 GGLAWAAPQAIRVLDAAGFDLVLVETVGVGQSEVE--------------IAAQADTSVVL 167

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +       + ++  +      G    ++ K D   
Sbjct: 168 LAPGM--GDGIQAAKAGILEIG-DLYVVNKADRDG 199


>gi|238927591|ref|ZP_04659351.1| LAO/AO transport system ATPase [Selenomonas flueggei ATCC 43531]
 gi|238884516|gb|EEQ48154.1| LAO/AO transport system ATPase [Selenomonas flueggei ATCC 43531]
          Length = 313

 Score = 39.8 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRT--- 165
           +V+ + G  G GK+T+  KL+K+    G  V + A D    F   AI   +I  +     
Sbjct: 44  YVLGITGPPGAGKSTMTDKLAKEYRKRGKTVGIIAVDPTSPFSGGAILGDRIRMNDLTLD 103

Query: 166 -SADFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNN 208
                           L++   +A K   A   DV+ ++T G   + 
Sbjct: 104 EGVFIRSMGTRGSLGGLSHKTADAVKAMDAFGKDVIFVETVGVGQSE 150


>gi|188993872|ref|YP_001928124.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Porphyromonas
           gingivalis ATCC 33277]
 gi|188593552|dbj|BAG32527.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Porphyromonas
           gingivalis ATCC 33277]
          Length = 859

 Score = 39.8 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 28/136 (20%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS---RRLDDGVREELEDLLIRSDIGV 60
           Q++A E   W  +++K   +    +   +  +++     RL  G  E L      +D   
Sbjct: 501 QQIAEEKKKWEEQMSKHRETVDENVVAHVVALMTGVPAERLSTGEGERLRT---MAD--- 554

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGV 119
                   +L TK   +D ++++++  +                     +P    L +G 
Sbjct: 555 --------DLKTKVVGQDTAIEKMVRAIQ----------RNRLGLRNEKKPIGSFLFLGP 596

Query: 120 NGVGKTTVIGKLSKKM 135
            GVGKT +  KL++ +
Sbjct: 597 TGVGKTYLAKKLAEYL 612


>gi|157866332|ref|XP_001681872.1| XPA-interacting protein [Leishmania major strain Friedlin]
 gi|68125171|emb|CAJ03071.1| putative XPA-interacting protein [Leishmania major strain Friedlin]
          Length = 327

 Score = 39.8 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           P VILVVG+ G GKTT++ ++       G++      D
Sbjct: 25  PVVILVVGMAGTGKTTLVHRMQHYAHTNGIRSYFINLD 62


>gi|292654994|ref|YP_003534891.1| ArgK-type transport ATPase [Haloferax volcanii DS2]
 gi|291370482|gb|ADE02709.1| argK-type transport ATPase [Haloferax volcanii DS2]
          Length = 372

 Score = 39.8 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 25/164 (15%)

Query: 58  IGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +   + +++++     L +   K  S      D+   +H      S            V+
Sbjct: 7   VESDLVERLLDGEHRALARAITKIESQSPGYRDIVSELHAHTGDAS------------VV 54

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAI--DQLKIWADRTSADF 169
            + G  G GK+T++ KL+K   D G  V + A D        A+  D++++ ++    D 
Sbjct: 55  GITGSPGAGKSTLVDKLAKYYRDQGETVGVIAVDPSSPYTGGAVLGDRIRMASNVGDMDV 114

Query: 170 V-----CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                         +    +A K   A   D +II+T G   N 
Sbjct: 115 FFRSMSARGQLGGLSTATADAVKALDAFGKDRIIIETVGAGQNE 158


>gi|120405204|ref|YP_955033.1| LAO/AO transport system ATPase [Mycobacterium vanbaalenii PYR-1]
 gi|119958022|gb|ABM15027.1| LAO/AO transport system ATPase [Mycobacterium vanbaalenii PYR-1]
          Length = 322

 Score = 39.8 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 41/193 (21%)

Query: 112 HVILVVGVNGVGKTTVIGKL--SKKMSDA-----------GLKVMLAAGDTFRSAAIDQL 158
            V+ + G  G GK+T +G L  + +++                     GD  R AA    
Sbjct: 75  QVVGITGPPGAGKSTTVGALVGAYRLAGKRVAVLAVDPSSPYNGGALLGDRIRMAA---- 130

Query: 159 KIWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
               +                 LA     A +   A   D++I++T G   +        
Sbjct: 131 --HINDPDVLIRSVATRGHLGGLAAAVPAAIRLLSALGYDLVILETVGVGQSE------- 181

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDGTARGGG 274
              I +    DP        V+      +A++  +     VA    + + K D       
Sbjct: 182 ---IEIAAVADPT------VVILNPGAGDAVQAAKAGLLEVADV--VAVNKADRDGADQT 230

Query: 275 LIPIVVTHKIPVY 287
           +  +     +P+ 
Sbjct: 231 VRDLRAETDVPIL 243


>gi|288915966|ref|ZP_06410348.1| LAO/AO transport system ATPase [Frankia sp. EUN1f]
 gi|288352595|gb|EFC86790.1| LAO/AO transport system ATPase [Frankia sp. EUN1f]
          Length = 355

 Score = 39.8 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 21/156 (13%)

Query: 66  IVEELLT---KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +V    T   +   + +S+          +   L P         + R  VI + G  GV
Sbjct: 44  LVARARTWDPRAVGRLISMVENAGPELREVAAALAP--------HTGRAQVIGLTGPPGV 95

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIG 175
           GK+T    L + +     +V + A D        A+      ++  +             
Sbjct: 96  GKSTTTTALVRSLRARDRRVGVLAVDPSSPFSGGALLGDRVRMQAHSGDRDVYIRSMATR 155

Query: 176 SDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNN 208
                LA    +A +   A   D+++++T G   + 
Sbjct: 156 GRLGGLAPATPQALRVLDAAGCDIVLVETVGGGQSE 191


>gi|20094972|ref|NP_614819.1| ATPase [Methanopyrus kandleri AV19]
 gi|19888226|gb|AAM02749.1| P-loop ATPase of the PilT family [Methanopyrus kandleri AV19]
          Length = 644

 Score = 39.8 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           T  +L++   ++I     D+    E+       D G A   ++   L         S   
Sbjct: 196 TREELEKWAREVIEKAYTDEKSFVEI-------DRGGATVVQLR-NLRISIARPPFSEGW 247

Query: 84  VLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            +  V  ++   L    LS+        R   ILV G  G GK+T    L++  ++ G 
Sbjct: 248 EITAVRPVVKVSLDDYDLSEKLKERLRERAEGILVAGPPGSGKSTFCAALAEFYAEQGK 306


>gi|266619842|ref|ZP_06112777.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288868551|gb|EFD00850.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 319

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +  +I V+G  G GKTT   KL+ ++++    V+L   D F
Sbjct: 11  QNKIIAVMGSPGSGKTTASIKLAAELAEKKKNVILVFCDPF 51


>gi|224543727|ref|ZP_03684266.1| hypothetical protein CATMIT_02940 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523380|gb|EEF92485.1| hypothetical protein CATMIT_02940 [Catenibacterium mitsuokai DSM
           15897]
          Length = 579

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 83/237 (35%), Gaps = 24/237 (10%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEE--LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
            V  ELE  L  +        KI++E  +    + + +   + + D++  ++    P  +
Sbjct: 299 NVFTELETALACA----ERVFKIIDEPAIKNPEHPETIDNPQGVIDLNN-VNFSYTP-ER 352

Query: 102 PFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RS--- 152
           P   DF+   +    I +VG  G GKTT+I  L +        + +   +T    RS   
Sbjct: 353 PLITDFNLHVNAGETIAIVGPTGCGKTTLINLLMRFYDPQSGSISIDGINTQTMDRSYLR 412

Query: 153 ---AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII---DTAGRLH 206
                + Q       T  D +     +       EA K+A A K  + +    D      
Sbjct: 413 SLYGMVLQDTWLFKGTIRDNIAYGSNNATDEEIIEAAKKAHAHKFIIQLKGGYDAM-LAE 471

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
             S L  G  +++ + + +  + P  +L    ++      RQ++             
Sbjct: 472 EGSNLSQGQRQLLSIARIMLANPPMLILDEATSSIDTRTERQIQDAFDTMMIGRTTF 528


>gi|222102330|ref|YP_002546471.1| replication protein A [Agrobacterium vitis S4]
 gi|221739574|gb|ACM40276.1| replication protein A [Agrobacterium vitis S4]
          Length = 409

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPH-----VILVVGV-NGVGKTTVIGKLSKKMSDAGLKVM 143
           E + + L   ++P      HR +     VI VV    G GKTT    L++ ++ +G +V+
Sbjct: 97  EEMRQFLEQSARPGTHYIPHRRNGERLQVIAVVNFKGGSGKTTTAAHLAQFLALSGHRVL 156

Query: 144 LAAGD 148
               D
Sbjct: 157 AVDLD 161


>gi|330685440|gb|EGG97096.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis
           VCU121]
          Length = 644

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 20/165 (12%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P++KP N + S   H I ++G NGVGKTT+I  ++++    G +V   A    +    D
Sbjct: 343 TPITKPINMEVSKGDH-IAIIGPNGVGKTTLIKTIAQRQRQLGGEVTFGAN--LKIGYYD 399

Query: 157 QLKIW--ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           Q +    +++T  D+V  +  +           +    + DV  I         + L   
Sbjct: 400 QKQAEFKSNKTILDYVWDQYPNMNEKDIRAVLGRFLFVQDDVKKIINDLSGGEKARLQLA 459

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTG-----QNALRQVEMFHA 254
           +  + R           +VL + + T       +  L Q     A
Sbjct: 460 LLMLQR----------DNVLILDEPTNHLDIDSKEMLEQALEHFA 494


>gi|322507819|gb|ADX03273.1| hrpA [Acinetobacter baumannii 1656-2]
 gi|323517419|gb|ADX91800.1| HrpA-like helicase [Acinetobacter baumannii TCDC-AB0715]
          Length = 1293

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 75/227 (33%), Gaps = 45/227 (19%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E+E L  +S     V Q+  E L   +  +D+ V +    + E I               
Sbjct: 40  EIEKLFEQS--NAKVRQRF-ERLPKIKLNQDLPVTQYADRLIEAI--------------- 81

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS- 166
             +  VI+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+    
Sbjct: 82  -QKHQVIIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGE 139

Query: 167 ---------ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSIL 211
                      F           L  +    A+          D +IID A     N   
Sbjct: 140 KLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYDTIIIDEAHERSLNIDF 199

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           + G       LK+L P  P   + V  AT     + +   +   A  
Sbjct: 200 IMGY------LKQLLPKRPDLKVIVTSATL---DVNRFSNYFNNAPI 237


>gi|303249171|ref|ZP_07335410.1| ATPase-like, ParA/MinD [Desulfovibrio fructosovorans JJ]
 gi|302489444|gb|EFL49392.1| ATPase-like, ParA/MinD [Desulfovibrio fructosovorans JJ]
          Length = 285

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           ++ L+D++E I K      KP       +  V+++ G  GVGK+TV   L+  ++  G +
Sbjct: 3   EQGLHDLNEEIKK------KPPTGFDKVKAVVVVLSGKGGVGKSTVSANLAAGLAMEGKR 56

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSA 167
             L   D    +    LK+  +R   
Sbjct: 57  TGLLDVDVHGPSIPRLLKLTGNRPGM 82


>gi|197105326|ref|YP_002130703.1| partition protein A [Phenylobacterium zucineum HLK1]
 gi|196478746|gb|ACG78274.1| partition protein A [Phenylobacterium zucineum HLK1]
          Length = 236

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+V+ +    G GKTT    L+  + + G +V +   D  +   +   ++          
Sbjct: 2   PNVVFISPKGGAGKTTAAVALALGLVERGQRVAMIDADPNKPL-VRWAELPNRCEGISVH 60

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
            +    D    A EA ++A     D +++DT G
Sbjct: 61  PAPTVPDIRDAAREAQRRAP----DWILLDTEG 89


>gi|156323019|ref|XP_001618341.1| hypothetical protein NEMVEDRAFT_v1g225255 [Nematostella vectensis]
 gi|156198549|gb|EDO26241.1| predicted protein [Nematostella vectensis]
          Length = 280

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +P  ILV+G+ G GKTT + +L+  +        +   D
Sbjct: 17  KPTCILVLGMAGSGKTTFVQRLTAHLHAGKKAPYVVNLD 55


>gi|145475603|ref|XP_001423824.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124390885|emb|CAK56426.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2973

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 29/113 (25%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
               I D+         ++EE++  L+ +         I  +L             + YD
Sbjct: 573 FNGIIKDLFPEV----DMKEEIDKQLVDA---------ITNQLK-----------LIHYD 608

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
                 K +  L +          H ++VVG+ G GKTT+I  L++ M     
Sbjct: 609 DPAAYKKKICQLMETIQVR-----HGVMVVGLTGTGKTTLIHTLARAMEQLNK 656


>gi|29833171|ref|NP_827805.1| gluconokinase [Streptomyces avermitilis MA-4680]
 gi|29610293|dbj|BAC74340.1| putative gluconokinase [Streptomyces avermitilis MA-4680]
          Length = 178

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            +  H PHV++V+GV G GKTT+   L+ ++      V  A GD F   A
Sbjct: 1   MEQVHTPHVVVVMGVAGTGKTTIGPLLAARL-----GVPYAEGDDFHPPA 45


>gi|55377360|ref|YP_135210.1| ABC transporter ATP-binding protein [Haloarcula marismortui ATCC
           43049]
 gi|55230085|gb|AAV45504.1| ABC transporter ATP-binding protein [Haloarcula marismortui ATCC
           43049]
          Length = 300

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 4/136 (2%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           D  ++  +    ++   +     R  V  ++G NG GKTT +  L+  +        +A 
Sbjct: 3   DARDIRKEYGGFVAVQGSSFSVDRGEVFGIIGPNGAGKTTTLKMLAGLLEPTSGSAEIAG 62

Query: 147 GDTFRSAAIDQLKIWADRTSA--DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            DT  +    QL    + +    +          A L       A+ +  D L  D    
Sbjct: 63  LDTETAEMRQQLGFLPEESPLYEEMTPISYLKFFADLYDVDPDVAEERMHDTL--DELEL 120

Query: 205 LHNNSILMAGIGKMIR 220
            H +  L      M R
Sbjct: 121 EHRDRKLGDMSKGMKR 136


>gi|83768394|dbj|BAE58533.1| unnamed protein product [Aspergillus oryzae]
          Length = 1160

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 18/119 (15%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VG +G GK+TV G L +  +     + L   D  R  +I  L+          +  +  
Sbjct: 311 LVGPSGSGKSTVTGLLERWYNTQDGIITLDGVDI-RQLSIQWLRTHIR------IVQQEP 363

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
           +   A  +E                 AG  + N+     I ++I   K    H     L
Sbjct: 364 TLFNATIFENVAYGL-----------AGTDYANAPKQVQIERVITACKAAYAHDFIETL 411


>gi|94400831|ref|NP_777237.3| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Bos taurus]
 gi|119753|sp|P26285|F262_BOVIN RecName: Full=6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           2; Short=6PF-2-K/Fru-2,6-P2ase 2; Short=PFK/FBPase 2;
           AltName: Full=6PF-2-K/Fru-2,6-P2ase heart-type isozyme;
           Includes: RecName: Full=6-phosphofructo-2-kinase;
           Includes: RecName: Full=Fructose-2,6-bisphosphatase
 gi|552322|gb|AAA30523.1| fructose 6-phosphate,2-kinase:fructose 2, 6-bisphosphatase [Bos
           taurus]
 gi|7579923|gb|AAB30689.2| fructose 6-P,2-kinase:fructose 2,6-bisphosphatase [Bos taurus]
 gi|296479371|gb|DAA21486.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Bos taurus]
          Length = 531

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 36  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRRQAVKSYKSY------ 89

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 90  DFFRHDNEEAMKIRKQCALVALKDVKA 116


>gi|296141605|ref|YP_003648848.1| Anion-transporting ATPase [Tsukamurella paurometabola DSM 20162]
 gi|296029739|gb|ADG80509.1| Anion-transporting ATPase [Tsukamurella paurometabola DSM 20162]
          Length = 366

 Score = 39.8 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR--SAAIDQLKIWADR 164
                 V++  G  GVGKTT    ++   ++ G +V++   D  R  + A+    +  + 
Sbjct: 11  LDPGTQVVVCCGSGGVGKTTTAASMALWAAEHGRRVVVLTIDPARRLAQALGVSALTNEP 70

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
            + D   +             F +      D
Sbjct: 71  QAVDVPGTGSLHAMMLDMKRTFDEMVTSNAD 101


>gi|184157504|ref|YP_001845843.1| HrpA-like helicase [Acinetobacter baumannii ACICU]
 gi|332875450|ref|ZP_08443275.1| ATP-dependent helicase HrpA [Acinetobacter baumannii 6014059]
 gi|183209098|gb|ACC56496.1| HrpA-like helicase [Acinetobacter baumannii ACICU]
 gi|332736347|gb|EGJ67349.1| ATP-dependent helicase HrpA [Acinetobacter baumannii 6014059]
          Length = 1285

 Score = 39.8 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 75/227 (33%), Gaps = 45/227 (19%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E+E L  +S     V Q+  E L   +  +D+ V +    + E I               
Sbjct: 32  EIEKLFEQS--NAKVRQRF-ERLPKIKLNQDLPVTQYADRLIEAI--------------- 73

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS- 166
             +  VI+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+    
Sbjct: 74  -QKHQVIIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGE 131

Query: 167 ---------ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSIL 211
                      F           L  +    A+          D +IID A     N   
Sbjct: 132 KLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYDTIIIDEAHERSLNIDF 191

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           + G       LK+L P  P   + V  AT     + +   +   A  
Sbjct: 192 IMGY------LKQLLPKRPDLKVIVTSATL---DVNRFSNYFNNAPI 229


>gi|91775844|ref|YP_545600.1| arsenite-activated ATPase (arsA) [Methylobacillus flagellatus KT]
 gi|91709831|gb|ABE49759.1| arsenite efflux ATP-binding protein ArsA [Methylobacillus
           flagellatus KT]
          Length = 587

 Score = 39.8 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 65/168 (38%), Gaps = 21/168 (12%)

Query: 58  IGVAVAQKIVEELLTKRYAK-DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           +G+   ++++ +L  +  A  D  ++     V+ELI  +            +    +I++
Sbjct: 284 VGLEALRQLLTDLPPQAPAAVDSPIELDEPSVAELIDGI-----------AADGHGLIML 332

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT+   ++ +++  GL V L   D    AA     + +   +      +  +
Sbjct: 333 MGKGGVGKTTLAAAIAVELAHRGLPVHLTTSD---PAAHLTDTLDSSLDNLTVSRIDPHA 389

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
           +         +   A+      +D  GR      L +   + I V + 
Sbjct: 390 ETERYRQHVLETKGAQ------LDAEGRALLEEDLRSPCTEEIAVFQA 431


>gi|312621948|ref|YP_004023561.1| adenylate/guanylate cyclase [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202415|gb|ADQ45742.1| adenylate/guanylate cyclase [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 1153

 Score = 39.8 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           LSK FN   S   + IL++G NGVGKT+++ KL+  +    +K      
Sbjct: 260 LSKLFNIIASKDTNSILLLGPNGVGKTSILEKLTNHLVANNIKTYYIRC 308


>gi|225432010|ref|XP_002279592.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296083223|emb|CBI22859.3| unnamed protein product [Vitis vinifera]
          Length = 412

 Score = 39.8 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 72  TKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              + K    + +   + +L I +     +   +  F  +P +I+VVG+ G GKTT + +
Sbjct: 27  ESAHIKGKEKEDISESLEKLHIEESSSGSAGSSSISFKRKPVIIIVVGMAGSGKTTFLHR 86

Query: 131 LSKKMSDAGLKVMLAAGD 148
           L      + ++  +   D
Sbjct: 87  LVCHTQASNIRGYVINLD 104


>gi|193212517|ref|YP_001998470.1| hypothetical protein Cpar_0855 [Chlorobaculum parvum NCIB 8327]
 gi|193085994|gb|ACF11270.1| conserved hypothetical protein [Chlorobaculum parvum NCIB 8327]
          Length = 515

 Score = 39.8 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 4/129 (3%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +  K  +  ++ +    +  E + +    L     +     P ++L  GV+G GK+T+  
Sbjct: 295 VRAKVTSIRLAQETNEAEKQETLDEHHSYLHLALGYTERPEPLLVLTHGVSGSGKSTISA 354

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
           +L+      G   + +  +  R   I  L+  A++   D    +      +   EA K A
Sbjct: 355 RLA---EAGGFIHIRSDVERKRLFGIGSLEKSAEQ-GLDIYTPDATEKTYSAMLEAAKAA 410

Query: 190 QAKKVDVLI 198
                 V+ 
Sbjct: 411 LEGGYPVIA 419


>gi|167755136|ref|ZP_02427263.1| hypothetical protein CLORAM_00640 [Clostridium ramosum DSM 1402]
 gi|167705186|gb|EDS19765.1| hypothetical protein CLORAM_00640 [Clostridium ramosum DSM 1402]
          Length = 640

 Score = 39.8 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 16/167 (9%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              +   H  L  G  G GKTTV   L+K ++  G           ++  + +     D 
Sbjct: 32  IKENRISHAYLFAGPRGTGKTTVAKLLAKALNCTGENPPCDQCPNCKAITVGE---HPDV 88

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              D   +    +   L  +        K  V IID          +          L +
Sbjct: 89  IEIDAASNNGVDEVRDLIDKVKYAPINGKYKVYIID---------EVHMMSTGAFNALLK 139

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL----IMTKMD 267
                P  ++ VL  T     L  +           +    I+++++
Sbjct: 140 TLEEPPAHIVFVLATTEPHKILPTIISRCQRFDFKKVENHDIISRLE 186


>gi|147818685|emb|CAN71805.1| hypothetical protein VITISV_029075 [Vitis vinifera]
          Length = 414

 Score = 39.8 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 72  TKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              + K    + +   + +L I +     +   +  F  +P +I+VVG+ G GKTT + +
Sbjct: 27  ESAHIKGKEKEDISESLEKLHIEESSSGSAGSSSISFKRKPVIIIVVGMAGSGKTTFLHR 86

Query: 131 LSKKMSDAGLKVMLAAGD 148
           L      + ++  +   D
Sbjct: 87  LVCHTQASNIRGYVINLD 104


>gi|300726155|ref|ZP_07059612.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella
           bryantii B14]
 gi|299776625|gb|EFI73178.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Prevotella
           bryantii B14]
          Length = 821

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 84/252 (33%), Gaps = 42/252 (16%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + + + +  + Y +D ++ +V+  V          ++K    D +     +L VG  GVG
Sbjct: 527 KTLYKRMAERIYGQDEAISQVVEAV---------EMAKAGLQDDNKPLASLLFVGPTGVG 577

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KT V    ++ ++           +  R    D  +       A  + S  G        
Sbjct: 578 KTEV----ARVLAQQ------LGIELVR---FDMSEYMEKHAVAKLIGSPAGYVGYEDGG 624

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNN--SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
                 +     VL++D   + H++  +IL+  +        +        V+ ++ +  
Sbjct: 625 LLVDAIRKTPNCVLLLDEIEKAHSDIFNILLQVMDYAKLTDNKGQKADFRHVVVIMTSNA 684

Query: 242 GQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPF 301
           G     Q  +    A             +RG  ++  V     P  F+     ++ +  F
Sbjct: 685 GAQFASQASVGFQSA------------VSRGDAMLATVKKTFKP-EFI---NRLSGIVVF 728

Query: 302 V--AKDFSAVIT 311
               +  +++I 
Sbjct: 729 HDMDEKMASLIL 740


>gi|290559164|gb|EFD92524.1| PrkA AAA domain protein [Candidatus Parvarchaeum acidophilus
           ARMAN-5]
          Length = 621

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV----LYDVSELIHKMLMPLSKPFNWD 106
           + L+ +D    + Q+  EE   ++  K V +++V    +Y + ++   ++  L +     
Sbjct: 7   ERLVEADGNPELIQR--EESTAEKIRKAVLLEKVPFEGIYGIRDVKENLMDALERASLIS 64

Query: 107 FSHRPHVILVVGVNGVGKT 125
                 +IL++G +G GKT
Sbjct: 65  RQGYTPIILLLGPSGSGKT 83


>gi|297201316|ref|ZP_06918713.1| ion-transporting ATPase [Streptomyces sviceus ATCC 29083]
 gi|297147852|gb|EDY56857.2| ion-transporting ATPase [Streptomyces sviceus ATCC 29083]
          Length = 495

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 63/203 (31%), Gaps = 34/203 (16%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA----IDQLKIWAD 163
             +  +++  G  GVGKTT    L  + ++ G KV++   D  R  A    ID L     
Sbjct: 37  DPKTRIVVCCGSGGVGKTTTAAALGLRAAERGRKVVVLTIDPARRLAQSMGIDSLDNVPR 96

Query: 164 RT-SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT-----------AGRLHNNSIL 211
           R    D   S             F +      D     T           AG       +
Sbjct: 97  RVKGLDDSASGELHAMMLDMKRTFDEIVEAHADAERAATILANPFYQSLSAGFAGTQEYM 156

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG--TTGLIMTKMDGT 269
                  +R     D       L V+D    ++AL  ++      G    G ++  +   
Sbjct: 157 AMEKLGQLRARDEWD-------LIVVDTPPSRSALDFLDA-PKRLGSFLDGRLIRMLTAP 208

Query: 270 ARGGGLIPIVVTHKIPVYFLGVG 292
           A+ GG   +         FL VG
Sbjct: 209 AKLGGRAGM--------KFLNVG 223


>gi|261346091|ref|ZP_05973735.1| type VI secretion ATPase, ClpV1 family [Providencia rustigianii DSM
           4541]
 gi|282565744|gb|EFB71279.1| type VI secretion ATPase, ClpV1 family [Providencia rustigianii DSM
           4541]
          Length = 887

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 96/283 (33%), Gaps = 43/283 (15%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKL---KEGITDIISSRRLDDGVRE---ELEDL-- 52
           MSNQ + SE ++   ++         +    K  I  ++  RR    V E   +LE +  
Sbjct: 479 MSNQSLLSELVTQDAQIMLKLTELEHRFEQEKSLINQLMEQRRQAQDVSEIQAQLEQVQL 538

Query: 53  ---LIRSDIGVAVAQKIVEE---------LLTKRYAKDVSVQRVLYDV--SELIHKMLMP 98
              LI  D+ V     ++ +         L  ++         +   V   E     L  
Sbjct: 539 GEPLITPDVDVRTVATVIADWTGVPLSSLLKDEQTELLELEGSLEKRVVGQESALLALGQ 598

Query: 99  LSKPFNWDFS---HRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA- 153
             +      +       V L+VG +G+GKT T +  L+  +      ++      ++ A 
Sbjct: 599 RLRAARTGLASENGPQGVFLLVGPSGIGKTETALA-LADVLFGGEKSLITINMSEYQEAH 657

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS-ILM 212
            + QLK              +G     +  EA    + +   V+++D   + H +   L 
Sbjct: 658 TVSQLKGSP--------PGYVGYGQGGILTEAV---RKRPYSVVLLDEVEKAHRDVLNLF 706

Query: 213 AG--IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
                   +R  +  +    ++V+  + A  G + L Q     
Sbjct: 707 YQVFDRGFMRDGEGREIDFRNTVIL-MTANLGSDLLMQQLEEF 748


>gi|299142098|ref|ZP_07035232.1| phosphoribulokinase family protein [Prevotella oris C735]
 gi|298576560|gb|EFI48432.1| phosphoribulokinase family protein [Prevotella oris C735]
          Length = 553

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 15/121 (12%)

Query: 32  ITDIISSRRLDDGVREELE--DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
           + +II   ++ +  +E     ++L     GV       E + T            L +VS
Sbjct: 220 LPEIIRQDKMFEIFKEHHRWQEIL-----GVRTVGDFNEAVTTGH-------ATDLINVS 267

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           E + +  + L             ++L+ G +  GKTT   +LS ++   G+K +  + D 
Sbjct: 268 EALQEKKIALIAD-EIANRKGVKLVLLAGPSSSGKTTTCKRLSVQLLANGIKPLQISLDD 326

Query: 150 F 150
           +
Sbjct: 327 Y 327


>gi|170591739|ref|XP_001900627.1| YME1 protein homolog [Brugia malayi]
 gi|158591779|gb|EDP30382.1| YME1 protein homolog, putative [Brugia malayi]
          Length = 673

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 16/184 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGK 124
           VEE+  +         R   +    +  ++  L  P  +    +  P  +L+VG  G GK
Sbjct: 171 VEEVDPEVIGVTFKDVRGADEAKNELRGIVSYLRDPERYTQLGARLPKGVLLVGPPGTGK 230

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K        + + +    ++ A+   +         FV           A  
Sbjct: 231 T----LLAK-------AIAVVSVSIQKAPAVPFFQASGSEFDELFVGQGARRVRDLFARA 279

Query: 185 AFKQAQAKKVDVLIIDTAGRLHN-NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
             K      +D   ID+ G     +++       + ++L  +D    +  + V+ AT   
Sbjct: 280 KEKAPCIIFIDE--IDSVGSKRVADAMHPHANQTVNQLLSEMDGFNTNDGVIVIGATNRV 337

Query: 244 NALR 247
             L 
Sbjct: 338 KDLD 341


>gi|160934233|ref|ZP_02081620.1| hypothetical protein CLOLEP_03104 [Clostridium leptum DSM 753]
 gi|156866906|gb|EDO60278.1| hypothetical protein CLOLEP_03104 [Clostridium leptum DSM 753]
          Length = 319

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           V   L    A   +   ++  V       +  +++   +   +   VI++ G +G GKTT
Sbjct: 12  VNRFLEINEAAKEAPAELIRQVEGAYRSAVQEVAQEV-FSLKNDCKVIMLSGPSGSGKTT 70

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTF 150
               L K + + G+  +  + D F
Sbjct: 71  TARILQKLLKEKGVSAVQISLDDF 94


>gi|149199284|ref|ZP_01876322.1| putative GAF sensor protein [Lentisphaera araneosa HTCC2155]
 gi|149137709|gb|EDM26124.1| putative GAF sensor protein [Lentisphaera araneosa HTCC2155]
          Length = 522

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 95  MLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVI 128
           ML P ++    D    PH I+ VVG  G GKTT +
Sbjct: 480 MLSPSNESKLIDLLKNPHGIMLVVGPTGSGKTTTL 514


>gi|160902880|ref|YP_001568461.1| phosphoribulokinase/uridine kinase [Petrotoga mobilis SJ95]
 gi|160360524|gb|ABX32138.1| phosphoribulokinase/uridine kinase [Petrotoga mobilis SJ95]
          Length = 553

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV--ILVVGVNGVGKTTVIGKLS 132
            ++     R +  V+E++H+           +  +R  V  I + G +  GKTT   +++
Sbjct: 252 ISQGAEKVRDIIRVAEVLHE---KKYAQIADEIVNRKSVRLITIAGPSSSGKTTSAKRIA 308

Query: 133 KKMSDAGLKVMLAAGDTF 150
             +   GL+ +  + D F
Sbjct: 309 LHLKVHGLRPISISLDDF 326


>gi|145298407|ref|YP_001141248.1| hypothetical protein ASA_1399 [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851179|gb|ABO89500.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 171

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 5/144 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK-IWADRTSADFVCS 172
           IL++G +G GK+ +  +L+K+++   + +       ++    +Q +       +   +  
Sbjct: 4   ILIIGNSGSGKSWLAARLAKRLTIREVNLDTI---VWQPGGFNQKRPQHEIDLAIQTLSQ 60

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           E       + + A  +      D L+            L++   +  R    +       
Sbjct: 61  EPSWVVEGV-FGALAEQLLDTADTLLFLDLDWSVCRDSLLSRGSQSARQRDAMAAEDNFH 119

Query: 233 VLQVLDATTGQNALRQVEMFHAVA 256
            L V  +  GQ A +    FH   
Sbjct: 120 KLLVWASEYGQRASKSSRQFHREL 143


>gi|120611181|ref|YP_970859.1| arginine/ornithine transport system ATPase [Acidovorax citrulli
           AAC00-1]
 gi|120589645|gb|ABM33085.1| LAO/AO transport system ATPase [Acidovorax citrulli AAC00-1]
          Length = 340

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 19/130 (14%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-- 148
           L+  +L    K F    S         GV GVGK+T I  L   +   G +V +   D  
Sbjct: 45  LLTALLPHTGKAFRLGLS---------GVPGVGKSTFIEALGLHLIAQGHRVAVLTIDPS 95

Query: 149 -TFRSAAIDQLKIWADRTSA-------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            +    +I   K   +R S            S      A    EA    +A   D++I++
Sbjct: 96  SSVSGGSILGDKTRMERLSVHEQAYIRPSPSSGTLGGVAEKTREAMLVCEAAGYDIVIVE 155

Query: 201 TAGRLHNNSI 210
           T G   + + 
Sbjct: 156 TVGVGQSETA 165


>gi|124266208|ref|YP_001020212.1| arginine/ornithine transport system ATPase [Methylibium
           petroleiphilum PM1]
 gi|124258983|gb|ABM93977.1| LAO/AO transport system kinase [Methylibium petroleiphilum PM1]
          Length = 337

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 24/154 (15%)

Query: 70  LLTKRYAKDVSV-----QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +  AK +++     +       ELI+ +L    +      S         GV GVGK
Sbjct: 20  VQRRAIAKTITLLESTREEHRARADELINTLLPHSGRSLRLGIS---------GVPGVGK 70

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRTSAD-------FVCSEI 174
           +T I  L   + + G +V + A D   +    +I   K   +R S D          S  
Sbjct: 71  STFIESLGLFLVERGHRVAVLAVDPSSSVSGGSILGDKTRMERLSVDERAYIRPSPASGT 130

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
               A    E+   A+A   DV+I++T G   + 
Sbjct: 131 LGGVAEKTRESMLVAEAAGYDVVIVETVGVGQSE 164


>gi|330509129|ref|YP_004385557.1| ABC transporter ATP-binding protein [Methanosaeta concilii GP-6]
 gi|328929937|gb|AEB69739.1| ABC transporter, ATP-binding protein [Methanosaeta concilii GP-6]
          Length = 614

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 104 NWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +     +P  VI +VG NG GKTT+I  L +       ++ +   D
Sbjct: 387 DISVKIKPGQVIALVGGNGSGKTTLIKLLCRLYDPQKGRIAIDGVD 432


>gi|294147017|ref|YP_003559683.1| chromosome partitioning protein ParA [Sphingobium japonicum UT26S]
 gi|292677434|dbj|BAI98951.1| chromosome partitioning protein ParA [Sphingobium japonicum UT26S]
          Length = 398

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 80  SVQRVLYDVSELI--HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +R  Y V EL+   ++L    +    D      V    G  GVGK+TV   L+   + 
Sbjct: 72  NGRRPGYKVEELLNMRQVLGASPERAPLDIPAIIAVQNFKG--GVGKSTVTTHLAHYFAV 129

Query: 138 AGLKVMLAAGDTF 150
            G +V++   D+ 
Sbjct: 130 QGYRVLVVDCDSQ 142


>gi|226323244|ref|ZP_03798762.1| hypothetical protein COPCOM_01016 [Coprococcus comes ATCC 27758]
 gi|225208434|gb|EEG90788.1| hypothetical protein COPCOM_01016 [Coprococcus comes ATCC 27758]
          Length = 533

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           I +VGVNG GKTT+   L+  +     K      DT
Sbjct: 374 IAIVGVNGAGKTTLSKLLAGLLVVTEGKNEGVLADT 409


>gi|159466744|ref|XP_001691558.1| ARF/Sar1-like GTPase [Chlamydomonas reinhardtii]
 gi|158278904|gb|EDP04666.1| ARF/Sar1-like GTPase [Chlamydomonas reinhardtii]
          Length = 289

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 114 ILVVGVNGVGKTTVIGKL---SKKMSDAGLKVMLAAGD 148
           IL VG++G GKTT+I  L   ++++ D G        D
Sbjct: 30  ILFVGLDGAGKTTIINTLLEEARRLKDRGTARTGGQTD 67


>gi|21220175|ref|NP_625954.1| gluconokinase [Streptomyces coelicolor A3(2)]
 gi|256788713|ref|ZP_05527144.1| gluconokinase [Streptomyces lividans TK24]
 gi|289772607|ref|ZP_06531985.1| shikimate kinase [Streptomyces lividans TK24]
 gi|13620205|emb|CAC36382.1| putative gluconokinase [Streptomyces coelicolor A3(2)]
 gi|289702806|gb|EFD70235.1| shikimate kinase [Streptomyces lividans TK24]
          Length = 175

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           H PHV++V+GV G GKTT+   L+ ++      V  A GD F   A
Sbjct: 5   HTPHVVVVMGVAGTGKTTIGPLLAARL-----GVPYAEGDDFHPPA 45


>gi|325002401|ref|ZP_08123513.1| non-specific protein-tyrosine kinase [Pseudonocardia sp. P1]
          Length = 492

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVV--GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           I +    +     +    +P  ++VV  GV G GK+T    L+  ++  G +V+L  GD 
Sbjct: 234 ISENFRRIRTNLQFVDVDKPRKVVVVTSGVAGEGKSTTTANLATAVASTGRRVLLIEGDL 293

Query: 150 FRSA 153
            R  
Sbjct: 294 RRPG 297


>gi|242241814|ref|ZP_04796259.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis W23144]
 gi|242234732|gb|EES37043.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis W23144]
          Length = 644

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 22/185 (11%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-KKMS 136
           D +    +  + +L      P+++P N +     H I ++G NGVGKTT+I  ++ K   
Sbjct: 323 DRNTGNDVMHIHDLKIGYDSPITRPINLEVFKGDH-IAIIGPNGVGKTTLIKTIAEKHPK 381

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIW--ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             G  +  A     +    DQ +    +++T  D+V  +              +    + 
Sbjct: 382 LGGQIIFGANL---QIGYYDQKQAEFKSNKTILDYVWDQYPHMNEKDVRAVLGRFLFVQE 438

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG-----QNALRQV 249
           DV  I         + L   +  + R           +VL + + T       +  L Q 
Sbjct: 439 DVKKIINDLSGGEKARLQLALLMLQR----------DNVLILDEPTNHLDIDSKEMLEQA 488

Query: 250 EMFHA 254
                
Sbjct: 489 LKDFE 493


>gi|195122172|ref|XP_002005586.1| GI18990 [Drosophila mojavensis]
 gi|193910654|gb|EDW09521.1| GI18990 [Drosophila mojavensis]
          Length = 752

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 22/188 (11%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++ 
Sbjct: 318 DVKGCDEAKQELKEVVEFLKNPDKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVAG 372

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                       F +A  +  ++         V                +      +D  
Sbjct: 373 EANVP------FFHAAGPEFDEVL--------VGQGARRVRDLFKAAKARAPCVIFIDE- 417

Query: 198 IIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
            ID+ G    NS+L       + ++L  +D    ++ + VL AT  ++ L Q  +     
Sbjct: 418 -IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRF 476

Query: 257 GTTGLIMT 264
               ++ T
Sbjct: 477 DVEVVVST 484


>gi|150376233|ref|YP_001312829.1| cobyrinic acid ac-diamide synthase [Sinorhizobium medicae WSM419]
 gi|150030780|gb|ABR62896.1| Cobyrinic acid ac-diamide synthase [Sinorhizobium medicae WSM419]
          Length = 398

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 79  VSVQRVLYDVSEL--IHKMLMPLSKPFNWDFSHRP----HVILVVGV-NGVGKTTVIGKL 131
           +S  R +Y V ++  I ++L   SK   +    RP     VI V+    G GKTT    L
Sbjct: 78  LSNGRRMYTVEDIDRIRRVLDEGSKTGKYIPHRRPGEKLQVISVMNFKGGSGKTTTSAHL 137

Query: 132 SKKMSDAGLKVMLAAGD 148
           ++ ++  G +V+    D
Sbjct: 138 AQYLALRGYRVLAIDLD 154


>gi|160880289|ref|YP_001559257.1| arsenite-activated ATPase ArsA [Clostridium phytofermentans ISDg]
 gi|160428955|gb|ABX42518.1| arsenite-activated ATPase ArsA [Clostridium phytofermentans ISDg]
          Length = 582

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 9/127 (7%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++ + +   +KD         VS  + K L  +             VI  +G  GVGKTT
Sbjct: 287 IDNIRS-FLSKDSYTMNSTKIVSNELSK-LQDVVDDLYLSGKK---VIFTMGKGGVGKTT 341

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           V   ++  +++ G KV L+  D    AA  +  I  ++ +      +  +          
Sbjct: 342 VAAAIALGLAEKGCKVHLSTTD---PAAHLKYVIH-EQENISMSHIDEHAVLKKYQETVL 397

Query: 187 KQAQAKK 193
            +A+A  
Sbjct: 398 SKARANN 404


>gi|78778946|ref|YP_397058.1| multidrug ABC transporter [Prochlorococcus marinus str. MIT 9312]
 gi|78712445|gb|ABB49622.1| ATPase [Prochlorococcus marinus str. MIT 9312]
          Length = 598

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 22/130 (16%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           ++L +     + +  +    + +  R+++ + EE+               +I + + TK 
Sbjct: 297 QRLFEPLRQLAERFTQIQGGLTAVERINELLDEEI---------------QIKDSISTKH 341

Query: 75  YA---KDVSVQRVLYDVSELIH---KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           ++   ++V+ Q       + ++   K    + K  ++  +   HV   VG  G GKTT+I
Sbjct: 342 FSENTQNVNKQFQGKIEFKNVNFFYKEGEDIIKNLSFMINPGEHV-AFVGPTGSGKTTII 400

Query: 129 GKLSKKMSDA 138
             L +     
Sbjct: 401 RLLCRLYEPQ 410


>gi|307943030|ref|ZP_07658375.1| cobyrinic Acid a,c-diamide synthase [Roseibium sp. TrichSKD4]
 gi|307773826|gb|EFO33042.1| cobyrinic Acid a,c-diamide synthase [Roseibium sp. TrichSKD4]
          Length = 435

 Score = 39.8 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 20/183 (10%)

Query: 112 HVILVVGVN-GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA-IDQLKIWADRTSADF 169
             IL+   + G GKTT+   L+   +       + +    +S       K     + A  
Sbjct: 7   KGILIAAPSSGSGKTTLT--LAVLRALRNAGHSVVSA---KSGPDYIDPKFHEAASGAPC 61

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           V +        L   A  + QA+  D+ II+ A        L  G          L    
Sbjct: 62  V-NLDAWAMPELGLRALARGQAEGHDLFIIEAA------MGLFDGAANGQGSAADLATSL 114

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAV----AGTTGLIMTKMDGTARGGGLI-PIVVTHKI 284
              VL V+D      ++  +    A         G+++ K+ G+AR   ++   +    +
Sbjct: 115 GVPVLLVIDCAKQAQSVAALVNGFASFRSDVQVCGIVLNKV-GSARHKAILRSALEPLGL 173

Query: 285 PVY 287
           PV 
Sbjct: 174 PVL 176


>gi|256395946|ref|YP_003117510.1| carbohydrate kinase, thermoresistant glucokinase family
           [Catenulispora acidiphila DSM 44928]
 gi|256362172|gb|ACU75669.1| carbohydrate kinase, thermoresistant glucokinase family
           [Catenulispora acidiphila DSM 44928]
          Length = 207

 Score = 39.8 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           P ++L+ GV+G GKTT+   L+ ++         A  D+F  AA
Sbjct: 18  PPILLITGVSGSGKTTIGSLLAGRLGWE-----YAEADSFHPAA 56


>gi|115975190|ref|XP_001177157.1| PREDICTED: hypothetical protein isoform 1 [Strongylocentrotus
           purpuratus]
          Length = 435

 Score = 39.8 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 109 HRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           H+PH VI++VG+   GKT +  KL++ ++  G+   +     +R  A+
Sbjct: 5   HKPHAVIVMVGLPARGKTYIAKKLARYLNWIGINTKVFNVGEYRRKAV 52


>gi|115975188|ref|XP_001177292.1| PREDICTED: hypothetical protein isoform 2 [Strongylocentrotus
           purpuratus]
          Length = 435

 Score = 39.8 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 109 HRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           H+PH VI++VG+   GKT +  KL++ ++  G+   +     +R  A+
Sbjct: 5   HKPHAVIVMVGLPARGKTYIAKKLARYLNWIGINTKVFNVGEYRRKAV 52


>gi|115922694|ref|XP_784664.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 436

 Score = 39.8 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 109 HRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           H+PH VI++VG+   GKT +  KL++ ++  G+   +     +R  A+
Sbjct: 6   HKPHAVIVMVGLPARGKTYIAKKLARYLNWIGINTKVFNVGEYRRKAV 53


>gi|115913970|ref|XP_001200279.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115941113|ref|XP_001188459.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 520

 Score = 39.8 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 109 HRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           H+PH VI++VG+   GKT +  KL++ ++  G+   +     +R  A+
Sbjct: 52  HKPHAVIVMVGLPARGKTYIAKKLARYLNWIGINTKVFNVGEYRRKAV 99


>gi|70725986|ref|YP_252900.1| hypothetical protein SH0985 [Staphylococcus haemolyticus JCSC1435]
 gi|68446710|dbj|BAE04294.1| vga [Staphylococcus haemolyticus JCSC1435]
          Length = 647

 Score = 39.8 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 22/187 (11%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +    DV   R L    +       P++ P N + S   H I ++G NGVGKTT+I  ++
Sbjct: 324 RNTGNDVMNIRNLKIGYD------SPITSPINIEVSKGDH-IAIIGPNGVGKTTLIKTIA 376

Query: 133 -KKMSDAGLKVMLAAGDTFRSAAIDQLKIW--ADRTSADFVCSEIGSDAAALAYEAFKQA 189
            ++    G     A     +    DQ +    +++T  D+V  +  +           + 
Sbjct: 377 QRQNQLEGEITFGANL---QIGYYDQKQAEFKSNKTIIDYVWDQYPTMNEKDIRAILGRF 433

Query: 190 QAKKVDV--LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              + DV  +I D +G       L   + +   VL   +P     +         +  L 
Sbjct: 434 LFVQDDVKKVINDLSGGEKARLQLALLMLQRDNVLILDEPTNHLDI-------DSKEMLE 486

Query: 248 QVEMFHA 254
           Q      
Sbjct: 487 QALKDFE 493


>gi|297627309|ref|YP_003689072.1| Daunorubicin resistance ATP-binding protein DrrA [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296923074|emb|CBL57658.1| Daunorubicin resistance ATP-binding protein DrrA [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 356

 Score = 39.5 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           V+G NG GKTT I  L+  +        +   D  R A I
Sbjct: 37  VLGPNGAGKTTTISMLATLLRPDAGSATIFGHDVERQAGI 76


>gi|260772579|ref|ZP_05881495.1| arsenical pump-driving ATPase [Vibrio metschnikovii CIP 69.14]
 gi|260611718|gb|EEX36921.1| arsenical pump-driving ATPase [Vibrio metschnikovii CIP 69.14]
          Length = 586

 Score = 39.5 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 62/156 (39%), Gaps = 35/156 (22%)

Query: 39  RRLDDGVREELEDLL---------IRSD--IGVAV------AQKIVEELLTKRYAKDVSV 81
           R+ +    + L ++L         +++D  +G+         + I+E + T+        
Sbjct: 253 RQREQAALQALPEILQGLSTDTIDLKADNMVGIKALASLLQTESILETMPTQIS------ 306

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
              +   S  +  M+  +++        +  +I+++G  GVGKTT+   ++  +++ G  
Sbjct: 307 --QIKLESPTLANMIDDIAE-------DKHGLIMLMGKGGVGKTTLAASIAVGLANKGFD 357

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           V L   D    AA  Q  +  +R +      +   +
Sbjct: 358 VHLTTSD---PAAHLQATLQGERPNLQVSRIDPREE 390


>gi|116075377|ref|ZP_01472637.1| putative multidrug efflux ABC transporter [Synechococcus sp.
           RS9916]
 gi|116067574|gb|EAU73328.1| putative multidrug efflux ABC transporter [Synechococcus sp.
           RS9916]
          Length = 605

 Score = 39.5 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 12/157 (7%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQK-IVEELLTK 73
           ++L       + +  +    + +  R+ + + E LE +    D     A++  + +L + 
Sbjct: 303 QRLFDPLRQLAERFTQIQGGLTAVERIGELLEEPLEIV----D-NAEAAKEGTIRQLASA 357

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           R  +   V   +       ++   P+ +  N+  +   HV  +VG  G GK+TVI  L +
Sbjct: 358 RAPRGEVVFENVSFA----YRPDEPILRNLNFRIAAGEHV-ALVGPTGSGKSTVIRLLCR 412

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
                  +++L   D  RS  + +L+        D  
Sbjct: 413 LYEPQKGRILLDGRDI-RSLPMQELRRQLGVVLQDTF 448


>gi|72382645|ref|YP_292000.1| ATPase [Prochlorococcus marinus str. NATL2A]
 gi|72002495|gb|AAZ58297.1| ATPase [Prochlorococcus marinus str. NATL2A]
          Length = 492

 Score = 39.5 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 31/138 (22%)

Query: 26  LKLKEGITDII--SSRRLDDGVREELEDL---LIRSDIGVAVA------------QKIVE 68
            ++K  +++I   S+ +LD+ V +EL +    L  S I   VA            + ++E
Sbjct: 146 NEIKTLLSNIAQASNSQLDENVLKELTNACGGLSESRI-RKVAARALAQRGQIGKKDLIE 204

Query: 69  ELLTKR-------------YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
            L  KR               K  +    L  + + + +     S+         P  +L
Sbjct: 205 VLEEKRQSIARSEVLEYCKTNKSPNDVGGLQILKDWLKQRKQAFSEEAKDFGLPLPKGVL 264

Query: 116 VVGVNGVGKTTVIGKLSK 133
           +VG  G GKT V   ++ 
Sbjct: 265 LVGPQGTGKTLVAKAIAN 282


>gi|302794426|ref|XP_002978977.1| hypothetical protein SELMODRAFT_177444 [Selaginella moellendorffii]
 gi|300153295|gb|EFJ19934.1| hypothetical protein SELMODRAFT_177444 [Selaginella moellendorffii]
          Length = 1426

 Score = 39.5 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 9/111 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA 76
           L +   + S +L   ++  +S R++    +E+L +  + +D   AV+  +  +L+ +R  
Sbjct: 518 LRRALQNLSNRLSSFVSARVSGRQVSPCYQEDLANARVLAD-HDAVSSHL--KLIQERKL 574

Query: 77  KDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           KD   Q +L     L I  +   + +          +V++V G  G GKTT
Sbjct: 575 KDKKYQAMLSARHSLPIASVKETILQHLVTS-----NVLVVSGETGSGKTT 620


>gi|227510580|ref|ZP_03940629.1| deoxyguanosine kinase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190232|gb|EEI70299.1| deoxyguanosine kinase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 217

 Score = 39.5 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM 135
           VI+  G+ GVGKTT+ GK++  +
Sbjct: 2   VIITAGMIGVGKTTLTGKIAAHL 24


>gi|33600469|ref|NP_888029.1| branched chain amino acid ABC transporter ATP-binding protein
           [Bordetella bronchiseptica RB50]
 gi|33568068|emb|CAE31981.1| Putative branched-chain amino acid transporter ATP-binding protein
           [Bordetella bronchiseptica RB50]
          Length = 283

 Score = 39.5 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           V++ + K     +   N D   R   I  ++G NG GKTT    LSK +  +  ++    
Sbjct: 40  VAQGLTKTFGGFTAVNNVDLRVRAQTIHALIGPNGAGKTTCFNLLSKFLQPSAGRIYYQG 99

Query: 147 GDTFRSAAID 156
            D  R+A  D
Sbjct: 100 SDITRAAPED 109


>gi|308475148|ref|XP_003099793.1| CRE-PGP-12 protein [Caenorhabditis remanei]
 gi|308266265|gb|EFP10218.1| CRE-PGP-12 protein [Caenorhabditis remanei]
          Length = 1341

 Score = 39.5 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 18/132 (13%)

Query: 51  DLLIRSDIGVAVAQKIVEE------------LLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
            +L+ + +  A   +I++              + K   K V         +    K+L  
Sbjct: 394 MVLLNARVAAATIYEIIDRTPDIDAYSSEGQKIAKIVGKVVFENVHFRYPTRKKVKVLNG 453

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           L+       S     + +VG +G GK+T +G L++     G KVM+   D  R   ID L
Sbjct: 454 LNLTVEPGTS-----VALVGHSGCGKSTSVGLLTRLYEQEGGKVMIDGHDV-RGLNIDWL 507

Query: 159 KIWADRTSADFV 170
           +        + +
Sbjct: 508 RKVVGIVQQEPI 519


>gi|262401847|ref|ZP_06078412.1| adenylylsulfate kinase [Vibrio sp. RC586]
 gi|262351819|gb|EEZ00950.1| adenylylsulfate kinase [Vibrio sp. RC586]
          Length = 208

 Score = 39.5 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            RP V+   G++G GK+TV G L  ++++ G    L  GD  R  
Sbjct: 30  QRPAVLWFTGLSGAGKSTVAGTLENRLAELGYHTYLLDGDNVRHG 74


>gi|240102879|ref|YP_002959188.1| Carbon monoxide dehydrogenase accessory protein, putative (cooC)
           [Thermococcus gammatolerans EJ3]
 gi|239910433|gb|ACS33324.1| Carbon monoxide dehydrogenase accessory protein, putative (cooC)
           [Thermococcus gammatolerans EJ3]
          Length = 341

 Score = 39.5 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +      ++   ++ L+ ++E + +                   +++ G  GVGKTT+  
Sbjct: 41  MREPLKGREDERRKKLFQIAEELRE-------RTKKQAPEEGFRVVITGKGGVGKTTMTA 93

Query: 130 KLSKKMSDAGLKVMLAAGD 148
            L++ ++  G +V+    D
Sbjct: 94  LLARLLARDGYRVLAVDED 112


>gi|145346802|ref|XP_001417871.1| chaperone, Hsp100 family, ClpB-type [Ostreococcus lucimarinus
           CCE9901]
 gi|144578099|gb|ABO96164.1| chaperone, Hsp100 family, ClpB-type [Ostreococcus lucimarinus
           CCE9901]
          Length = 923

 Score = 39.5 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 66/176 (37%), Gaps = 29/176 (16%)

Query: 45  VREELEDLLIRSDI-----GVAVAQ-------KIVEELLTKRYAKDVSVQRVLYDVSELI 92
           +R+E+ +  I +D+     G+ VA+       K+++ L  + + + V     +  V E I
Sbjct: 580 LRDEVTEADI-ADVISKWTGIPVAKLQQGEREKLLD-LPAELHKRVVGQDEAVQSVCEAI 637

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            +    LS P     +      + +G  GVGKT +   L+  +     +  +   D    
Sbjct: 638 QRSRAGLSDP-----NRPIASFMFLGPTGVGKTELCKTLANFL--FNTEEAMIRIDMS-- 688

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
              + ++  +           +G +      EA +    +   V++ D   + H +
Sbjct: 689 ---EYMEKHSVSRLIGAPPGYVGFEEGGQLTEAVRH---RPYSVVLFDEMEKAHGD 738


>gi|108759056|ref|YP_632985.1| ClpA/B family protein [Myxococcus xanthus DK 1622]
 gi|108462936|gb|ABF88121.1| ClpA/B family protein [Myxococcus xanthus DK 1622]
          Length = 1127

 Score = 39.5 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 17/148 (11%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRP-HVILVVGVNGVGKTTVIG 129
            KR A    +QR +    E +  ++  +         S +P    L VG  GVGKT    
Sbjct: 493 KKREALTWEMQRQVAGQPEAVEAVVDAILTLQSALQPSDKPLATYLFVGPTGVGKTETAK 552

Query: 130 KLSKKMSDAGLKVMLAAGDTF-----------RSAAID-QLKIWADRTSADFVCSEIGSD 177
            L++ +     +++      F           R  A D +L           V  +    
Sbjct: 553 ALARTLFGGEQRLIRFDMSEFVTSSSITRLLGRPGAPDGELTTALRTQPFCVVLFDEVEK 612

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           A    ++A  Q   +     + D AGR 
Sbjct: 613 AHPRVFDALLQFLGEGR---LTDGAGRT 637


>gi|28211528|ref|NP_782472.1| arsenical pump-driving ATPase [Clostridium tetani E88]
 gi|28203969|gb|AAO36409.1| arsenical pump-driving ATPase [Clostridium tetani E88]
          Length = 589

 Score = 39.5 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 19/151 (12%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           ++   N  +  +  VI  +G  GVGKTTV   ++  +S  G+KV L   D       + +
Sbjct: 320 INDLINDLYKSKKKVIFTMGKGGVGKTTVASTIALALSQKGVKVHLTTTD-----PSNHI 374

Query: 159 K-IWADRTSADFVCSEIGSDAAALAYEAFKQAQAK--KVDVLIIDTAGRLHNNSILMAGI 215
           K I     +          +      E   +A       D+  I           L +  
Sbjct: 375 KYIMGKHKNITISEINEQEELKKYQNEVISKASETMSGEDLEYI--------KEDLRSPC 426

Query: 216 GKMI---RVLKRLDPHAPHSVLQVLDATTGQ 243
            + I   R    +   A   V+ +  A TG 
Sbjct: 427 TQEIAVFRAFAEIVEKADDEVVVIDTAPTGH 457


>gi|86152336|ref|ZP_01070547.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315125014|ref|YP_004067018.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85840825|gb|EAQ58076.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315018736|gb|ADT66829.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 368

 Score = 39.5 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 103/320 (32%), Gaps = 56/320 (17%)

Query: 14  IRKLTK----GFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVE 68
           + KL      GF    +       + +   ++ DDGV  ++E +   +     VA +I +
Sbjct: 6   LEKLKTVKYPGFEKDIVSF-----NFVKDIKIQDDGVFIDIEIV--SA--NPEVANEIRK 56

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +     +        L  ++  I +         N     +  +++  G  GVGK+T  
Sbjct: 57  NVTE-ALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMVSSGKGGVGKSTTT 115

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+  M+  G +V +   D +               +   +  E  +    +  +  K 
Sbjct: 116 VNLAISMAKMGKRVGILDADIYGP-------------NIPRMLGETKTQP-EVVGQRLKP 161

Query: 189 AQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQV----LDATTGQ 243
                   + + + G L      LM     +++ +++L        L V    +   TG 
Sbjct: 162 ILTHG---VYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD 218

Query: 244 NALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIPIVVTHKIPVY--------FLG- 290
             +   +     AG    + T     +D + R    + +     IP+         FL  
Sbjct: 219 AQITSAQSIPITAGV--CVSTPQTVSLDDSKR---ALDMFNKLHIPIAGVIENMSGFLCP 273

Query: 291 -VGEGINDLEPFVAKDFSAV 309
             G+  +      A+D +  
Sbjct: 274 DNGKEYDIFGKGTAEDMAKA 293


>gi|317501235|ref|ZP_07959440.1| ABC-type multidrug/protein/lipid transport system [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897411|gb|EFV19477.1| ABC-type multidrug/protein/lipid transport system [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 573

 Score = 39.5 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIH---------KMLMPLSKPFNWDFSHRPHVI 114
           ++ ++ + T+   KD S    L DV  L+               +    +++      V 
Sbjct: 310 RRFLDVMETEPEIKDASDAEELTDVKGLVRYENVSFHYADDDTSVLSHISFEIPAGRSV- 368

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
            +VG +G GKTT+   L +     G ++ +   D  R+  +  L+        D      
Sbjct: 369 ALVGPSGSGKTTICSLLPRFYDVTGGRITIDGKDV-RTLTLKSLRSHIGVVQQDVY---- 423

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
               +    +     +    D  IID A R + + 
Sbjct: 424 --LFSGTIRDNIAYGKPDASDEEIIDAAKRANIHD 456


>gi|310658249|ref|YP_003935970.1| membrane ATPase/protein kinase [Clostridium sticklandii DSM 519]
 gi|308825027|emb|CBH21065.1| membrane ATPase/protein kinase [Clostridium sticklandii]
          Length = 310

 Score = 39.5 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 38/220 (17%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSEL---IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +++E LL     +  +  R++  V        ++L  L K      +   +VI + G  
Sbjct: 1   MELLERLL---KGEKTACARLISIVENESPGYVELLKELHK-----HTKGAYVIGITGPP 52

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRTSAD-------FV 170
           G GK+T+  KL KK+ + G KV + A D    F   AI   +I     S D         
Sbjct: 53  GAGKSTLTDKLIKKLREKGKKVGVIAIDPTSPFTKGAILGDRIRMVDLSVDKDVFIRSMG 112

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                   +     A K       D +I++T G   +                       
Sbjct: 113 TRGHLGGLSRATQGAIKILDVYGCDYIIVETVGVGQSEVD---------------IVKTA 157

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
            +V+ V+    G + ++ ++      G    ++ K D   
Sbjct: 158 DTVVMVMVPGLG-DDIQAIKAGVMEIG-DVFVVNKSDKDG 195


>gi|302824717|ref|XP_002993999.1| hypothetical protein SELMODRAFT_187668 [Selaginella moellendorffii]
 gi|300138161|gb|EFJ04939.1| hypothetical protein SELMODRAFT_187668 [Selaginella moellendorffii]
          Length = 1422

 Score = 39.5 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 24/149 (16%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD---IGVAVAQKIVEE--LL 71
           L +   + S +L   ++  +S R++    +E+L +  + +D   +   +  K+++E  L 
Sbjct: 510 LRRALQNLSNRLSSFVSARVSGRQVSPCYQEDLANTRVLADHDAVSSHL--KLIQERKLK 567

Query: 72  TKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
            K+Y   +S +  L    V E I + L+              +V++V G  G GKTT + 
Sbjct: 568 DKKYQAMLSARHSLPIASVKETILQHLI------------TSNVLVVSGETGSGKTTQVP 615

Query: 130 KLSK---KMSDAGLKVMLAAGDTFRSAAI 155
           +        +  G    +      R AAI
Sbjct: 616 QYILDDMIAAGQGSSCKIICTQPRRIAAI 644


>gi|257440207|ref|ZP_05615962.1| Clp protease, ATP-binding subunit ClpC [Faecalibacterium
           prausnitzii A2-165]
 gi|257197241|gb|EEU95525.1| Clp protease, ATP-binding subunit ClpC [Faecalibacterium
           prausnitzii A2-165]
          Length = 767

 Score = 39.5 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 16/142 (11%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  L T+   K +     ++ V++ + +    LS         RP   + VG  GVGKT 
Sbjct: 468 LASLETELKKKIIGQDDAVHLVAQAVKRSRADLSG------RRRPASFIFVGPTGVGKTE 521

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           ++ +L+ ++ D    ++            D  +       +  + S  G      A +  
Sbjct: 522 LVKQLANQLFDGPDPLIRL----------DMSEYMEKYAVSRMIGSPPGYVGYEEAGQLT 571

Query: 187 KQAQAKKVDVLIIDTAGRLHNN 208
           ++ + +   V++ D   + H +
Sbjct: 572 EKVRRRPYSVVLFDEIEKAHPD 593


>gi|198285605|gb|ACH85341.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4-like [Salmo
           salar]
          Length = 283

 Score = 39.5 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             ++ P +I++VG+   GKT +  KLS+ ++  G+   +     +R  A+   K      
Sbjct: 24  QLTNSPTLIVMVGLPARGKTYISKKLSRYLNWIGVPTKVFNLGQYRREAVQSYK------ 77

Query: 166 SADFVC---SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV- 221
           + +F      E      A A  A K       DV+I  +               +  R+ 
Sbjct: 78  NFEFFRPDNEEAMQIRRACATNALK-------DVVIYFSKEHGQVAVFDATNTTRERRIS 130

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQ 248
           +        + V  V       + + Q
Sbjct: 131 IVSFSKEKGYKVFFVESICDDPDIIAQ 157


>gi|195384371|ref|XP_002050891.1| GJ19952 [Drosophila virilis]
 gi|194145688|gb|EDW62084.1| GJ19952 [Drosophila virilis]
          Length = 749

 Score = 39.5 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 22/188 (11%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV          + + + L    K  N      P  +L+VG  G GKT     L++ ++ 
Sbjct: 315 DVKGCDEAKQELKEVVEFLKNPDKFSNLGGKL-PKGVLLVGPPGTGKT----LLARAVAG 369

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                       F +A  +  ++         V                +      +D  
Sbjct: 370 EASVP------FFHAAGPEFDEVL--------VGQGARRVRDLFKAAKARAPCVIFIDE- 414

Query: 198 IIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
            ID+ G    NS+L       + ++L  +D    ++ + VL AT  ++ L Q  +     
Sbjct: 415 -IDSVGAKRTNSVLHPYANQTINQLLSEMDGFHQNAGVIVLGATNRRDDLDQALLRPGRF 473

Query: 257 GTTGLIMT 264
               ++ T
Sbjct: 474 DVEVVVST 481


>gi|111225259|ref|YP_716053.1| putative transport system kinase [Frankia alni ACN14a]
 gi|111152791|emb|CAJ64534.1| Putative transport system kinase [Frankia alni ACN14a]
          Length = 397

 Score = 39.5 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 72/205 (35%), Gaps = 41/205 (20%)

Query: 117 VGVNG---VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTS 166
           VG+ G   VGK+T +  L +    AG +V + A D        A+      +   A    
Sbjct: 127 VGLTGAPGVGKSTTVTALVRAYRRAGRRVGVLAVDPSSPYSGGALLGDRVRMSEHAGDPG 186

Query: 167 ADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                         LA    +A +   A   DV++++T G                    
Sbjct: 187 VFIRSLASRGRLGGLAAATAQALRVLDAAGFDVILVETVGVGQAE--------------- 231

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMD--GTARGGGLIPIVV 280
            +D  A      VL A    + ++ V+     VA    L++ K D  G AR    +  + 
Sbjct: 232 -IDIAALADTTCVLLAPDAGDDVQAVKAGLLEVADV--LVVNKADRPGAARTAADLTAMT 288

Query: 281 THKI----PV---YFLGVGEGINDL 298
             ++    PV       +GEG+++L
Sbjct: 289 RMRVGARQPVVVRVAATLGEGVDEL 313


>gi|58040010|ref|YP_191974.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Gluconobacter
           oxydans 621H]
 gi|58002424|gb|AAW61318.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Gluconobacter
           oxydans 621H]
          Length = 371

 Score = 39.5 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 44/110 (40%), Gaps = 19/110 (17%)

Query: 28  LKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           + + ++ + +   L++ +  E  + +I +D       ++   L  +   +D         
Sbjct: 86  IMDVLSRLTNRGALEELMAREQRETVIDAD-------ELAASLRARVIGQD--------- 129

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMS 136
             ++   +   + +        +P  I L+ G  G GKT +  +++K+M 
Sbjct: 130 --QVCEDIAQQMRRRLALQVRGKPVGIFLLAGPPGTGKTYLAKQMAKQME 177


>gi|116625157|ref|YP_827313.1| hypothetical protein Acid_6097 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228319|gb|ABJ87028.1| conserved hypothetical protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 202

 Score = 39.5 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKM 135
           + +VG  G GKTT    L+ ++
Sbjct: 2   VRLVGPGGSGKTTTGALLAARL 23


>gi|116623572|ref|YP_825728.1| hypothetical protein Acid_4482 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226734|gb|ABJ85443.1| conserved hypothetical protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 184

 Score = 39.5 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKM 135
           + +VG  G GKTT    L+ ++
Sbjct: 2   VRLVGPGGSGKTTTGALLAARL 23


>gi|326405561|ref|YP_004285643.1| type VI secretion system family protein [Acidiphilium multivorum
           AIU301]
 gi|325052423|dbj|BAJ82761.1| type VI secretion system family protein [Acidiphilium multivorum
           AIU301]
          Length = 882

 Score = 39.5 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 19/147 (12%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +    K+ E +  +   +       L  V++ I      L+ P          V ++VG 
Sbjct: 571 INTVLKLKEAMEQRIVGQ----PHALEAVAQAIRTSRAKLTDP-----RKPIGVFMMVGT 621

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           +G GKT     L+  +      +       F+           +   +  + S  G    
Sbjct: 622 SGTGKTETALTLANLLYGGEQNMTTINMTEFK----------EEHKVSLLMGSPPGYVGY 671

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLH 206
                  +  + +   V+++D   + H
Sbjct: 672 GEGGVLTEAVRRRPYSVVLLDEMEKAH 698


>gi|195170457|ref|XP_002026029.1| GL10246 [Drosophila persimilis]
 gi|194110893|gb|EDW32936.1| GL10246 [Drosophila persimilis]
          Length = 5279

 Score = 39.5 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 16/93 (17%)

Query: 61   AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             V+++I++ +   +   D+   R +  ++ L  K L    +P           +L+VG  
Sbjct: 1383 PVSRRILQAIRNFKLRGDIVWTRNMTRMAVLTAKAL-EFDEP-----------VLLVGPT 1430

Query: 121  GVGKTTVIGKLSK----KMSDAGLKVMLAAGDT 149
            G GKTTV   L+     ++      +     D 
Sbjct: 1431 GCGKTTVCQLLASIADVQLRILNCHMHTEGADF 1463


>gi|148262049|ref|YP_001236176.1| ATPase [Acidiphilium cryptum JF-5]
 gi|146403730|gb|ABQ32257.1| ATPase AAA-2 domain protein [Acidiphilium cryptum JF-5]
          Length = 882

 Score = 39.5 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 19/147 (12%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +    K+ E +  +   +       L  V++ I      L+ P          V ++VG 
Sbjct: 571 INTVLKLKEAMEQRIVGQ----PHALEAVAQAIRTSRAKLTDP-----RKPIGVFMMVGT 621

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           +G GKT     L+  +      +       F+           +   +  + S  G    
Sbjct: 622 SGTGKTETALTLANLLYGGEQNMTTINMTEFK----------EEHKVSLLMGSPPGYVGY 671

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLH 206
                  +  + +   V+++D   + H
Sbjct: 672 GEGGVLTEAVRRRPYSVVLLDEMEKAH 698


>gi|291453868|ref|ZP_06593258.1| ABC-transporter [Streptomyces albus J1074]
 gi|291356817|gb|EFE83719.1| ABC-transporter [Streptomyces albus J1074]
          Length = 352

 Score = 39.5 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE------LIHKMLMPLSKPFNWDFS-HRP 111
            +   ++ V +L  +R  ++V     +  V E      L+ +    +       FS  R 
Sbjct: 16  AMDATERPVADLPAQRDGQEVIHLDRVEKVFEVRRRAGLLRREKREVRAVDGLSFSVGRG 75

Query: 112 HVILVVGVNGVGKTTVI 128
            V+  VG NG GK+T I
Sbjct: 76  EVVGFVGPNGAGKSTTI 92


>gi|124026367|ref|YP_001015483.1| ATPase [Prochlorococcus marinus str. NATL1A]
 gi|123961435|gb|ABM76218.1| ATPase [Prochlorococcus marinus str. NATL1A]
          Length = 492

 Score = 39.5 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 31/138 (22%)

Query: 26  LKLKEGITDII--SSRRLDDGVREELEDL---LIRSDIGVAVA------------QKIVE 68
            ++K  +++I   S+ +LD+ V +EL +    L  S I   VA            + ++E
Sbjct: 146 NEIKTLLSNIAQASNSQLDENVLKELTNACGGLSESRI-RKVAARALAQRGQIGKKDLIE 204

Query: 69  ELLTKR-------------YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
            L  KR               K  +    L  + + + +     S+         P  +L
Sbjct: 205 VLEEKRQSIARSEVLEYCKTNKSPNDVGGLQILKDWLKQRKQAFSEEAKDFGLPLPKGVL 264

Query: 116 VVGVNGVGKTTVIGKLSK 133
           +VG  G GKT V   ++ 
Sbjct: 265 LVGPQGTGKTLVAKAIAN 282


>gi|3309583|gb|AAC26113.1| fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Solanum
           tuberosum]
          Length = 501

 Score = 39.5 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 62/205 (30%), Gaps = 36/205 (17%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           I++VG+   GKT    KL++ +   G          +R     +LK      +ADF    
Sbjct: 103 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR-----RLK-HGSNQTADFFRGD 156

Query: 173 -----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG----------- 216
                E  ++ AALA E       +   V I D          ++  +            
Sbjct: 157 NPEGLEARNEVAALAMEDMIAWMQEGGQVGIFDATNSSRKRRNMLMQMAEGKCKIIFLET 216

Query: 217 ---------KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
                    + IR+  +  P               +N L   E  +        I   +D
Sbjct: 217 LCNDPKLIERNIRLKVQQSPDYAEEPDFEAGYRDFKNRLDNYEKVYEPVEEGSYI-KMID 275

Query: 268 GTARGGGLIPIVVTHK-IP--VYFL 289
             +  GG I +      +P  + F 
Sbjct: 276 MVSGHGGQIQVNNISGYLPGRIVFF 300


>gi|119356672|ref|YP_911316.1| ABC transporter related [Chlorobium phaeobacteroides DSM 266]
 gi|119354021|gb|ABL64892.1| ABC transporter related protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 607

 Score = 39.5 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             I +VG  G GKTT+I  L++        + +   D  R  
Sbjct: 393 KTIALVGPTGAGKTTIINLLTRFYELQSGSITIDGTDIRRIG 434


>gi|303239635|ref|ZP_07326160.1| phosphoribulokinase/uridine kinase [Acetivibrio cellulolyticus CD2]
 gi|302592806|gb|EFL62529.1| phosphoribulokinase/uridine kinase [Acetivibrio cellulolyticus CD2]
          Length = 557

 Score = 39.5 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           L  V E +H+  +           ++  V+L+ G +  GKTT   +L+ ++   GL+ + 
Sbjct: 266 LIRVGEALHEKKIAQIADMIAFNKNKKRVVLIAGPSSSGKTTFAHRLAIQLKVNGLRPVT 325

Query: 145 AAGDTF 150
            + D +
Sbjct: 326 ISLDDY 331


>gi|295697936|ref|YP_003602593.1| Arsenical pump-driving ATPase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295060048|gb|ADF64785.1| Arsenical pump-driving ATPase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 583

 Score = 39.5 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ +++D G  V L   D    AA     +     +       
Sbjct: 330 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAAHLSTTLNGSLKNLQVSRIN 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    K  D+   D AG+      L +   + I V + 
Sbjct: 387 PHDETERYRQHVLE---TKGRDL---DEAGKRLLEEDLRSPCTEEIAVFQA 431


>gi|254173568|ref|ZP_04880240.1| ATPase involved in chromosome partitioning, ParA/MinD family
           [Thermococcus sp. AM4]
 gi|214032260|gb|EEB73090.1| ATPase involved in chromosome partitioning, ParA/MinD family
           [Thermococcus sp. AM4]
          Length = 247

 Score = 39.5 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI++ G  G GKTT    LS  ++    +V+   GD +       L       +  +  
Sbjct: 2   AVIVMTGRGGAGKTTTTANLSTFLAGREYRVLAIDGDLYLPN----LGFHFGMDNVKYTV 57

Query: 172 SEIGSDAAALAYEAFKQAQAKKV 194
             +  D +     A  + +   V
Sbjct: 58  HSLLRDPSLDPEWAIYKHRETGV 80


>gi|206575620|ref|YP_002235703.1| arsenical pump-driving ATPase [Klebsiella pneumoniae 342]
 gi|206570464|gb|ACI12110.1| arsenical pump-driving ATPase [Klebsiella pneumoniae 342]
          Length = 583

 Score = 39.5 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ +++D G  V L   D    AA     +     +       
Sbjct: 330 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAAHLSTTLNGSLKNLQVSRIN 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    K  D+   D AG+      L +   + I V + 
Sbjct: 387 PHDETERYRQHVLE---TKGRDL---DEAGKRLLEEDLRSPCTEEIAVFQA 431


>gi|326773539|ref|ZP_08232822.1| ABC transporter, ATP-binding protein, NodI family [Actinomyces
           viscosus C505]
 gi|326636769|gb|EGE37672.1| ABC transporter, ATP-binding protein, NodI family [Actinomyces
           viscosus C505]
          Length = 283

 Score = 39.5 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 15/179 (8%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P+ +  +        V+ ++G NGVGKTT++  L   +S    +V +   D  R+ A  
Sbjct: 17  TPVLRGIDLSVEAG-EVVCLLGPNGVGKTTLVENLLGSLSPTAGRVRVLDTDPRRAGADF 75

Query: 157 QLKI-WADRTSADFVCSEIGSDAAALAYEAFKQAQA-KKVDVLI--IDTAGRLHNNSILM 212
             ++    ++  D     +      +       A+    VD ++  +D + +   +S L 
Sbjct: 76  WARVGLVQQSWTDHAKWRVRDQLEWIRSVQLTAARRVSSVDEVLDAVDLSEKA--DSRLS 133

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLD-ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
              G   R +           L VLD  TTG + + +            LI+ ++D  A
Sbjct: 134 RLSGGQRRTIDFAAALMATPELLVLDEPTTGLDPVSKAR-------LHDLILARVDDDA 185


>gi|284043749|ref|YP_003394089.1| methylmalonyl-CoA mutase [Conexibacter woesei DSM 14684]
 gi|283947970|gb|ADB50714.1| Methylmalonyl-CoA mutase [Conexibacter woesei DSM 14684]
          Length = 1144

 Score = 39.5 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 22/152 (14%)

Query: 76  AKDVSVQRVLYDVSELI--HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI-GKLS 132
             DV++ R+L  + + +     L  L   ++   +  P V+ + G  G GK+TV    L+
Sbjct: 167 GDDVAIARMLSALEDEVFDAGELEGLRGAWHEAGAGVP-VLGITGTGGAGKSTVTDELLA 225

Query: 133 KKMSDAGLKVMLAAG--------------DTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           + +       +                  D  R  ++   +I+    +         S  
Sbjct: 226 RFVRQFPQLRIAVLAVDPTRRRTGGALLGDRIRMNSLRHERIYMRSMA----TRRQHSAT 281

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           +A+  +A    +A   D++I++TAG   ++S 
Sbjct: 282 SAMLQDAVAYLRASGFDLVIVETAGIGQSDSE 313


>gi|167740416|ref|ZP_02413190.1| protease associated ATPase ClpB [Burkholderia pseudomallei 14]
          Length = 830

 Score = 39.5 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 38/210 (18%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++E+E +L            + + L  +   +D ++  +   V           +   N
Sbjct: 515 VKDEIETVL-----------NLRDLLGARVIGQDHALGAIAQRVR----------TATAN 553

Query: 105 WDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIW 161
            +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK  
Sbjct: 554 LEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKLITINMSEYQEAHSVSGLK-- 610

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                     S  G           +  +     V+++D   + H + + M         
Sbjct: 611 ---------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGA 661

Query: 222 LKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           +   +       + L +L +  G +A+ Q 
Sbjct: 662 MDDAEGREIDFRNTLIILTSNVGSSAVMQA 691


>gi|51599085|ref|YP_073273.1| ATP-dependent Clp protease, subunit C [Borrelia garinii PBi]
 gi|51573656|gb|AAU07681.1| ATP-dependent Clp protease, subunit C [Borrelia garinii PBi]
          Length = 739

 Score = 39.5 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL---YDVSELIHKMLMPL 99
           D +++ + ++L      +     I EE+L  +  +    Q+V+   + VSELI +++   
Sbjct: 410 DDIQKAISEIL-----SIKTTNSIKEEILELKEVESKINQKVIGQKHAVSELIKEIIK-- 462

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            K    D S     IL++G NG GKTT+ 
Sbjct: 463 VKLGLNDDSKPLTSILLIGSNGCGKTTLT 491


>gi|11499850|ref|NP_071094.1| nucleotide-binding protein [Archaeoglobus fulgidus DSM 4304]
 gi|2648251|gb|AAB88984.1| nucleotide-binding protein [Archaeoglobus fulgidus DSM 4304]
          Length = 254

 Score = 39.5 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           + ++ G  GVGK+TV   L+   +  G KV +   D 
Sbjct: 21  IAVMSGKGGVGKSTVTALLAVHYAKQGKKVGILDADF 57


>gi|57640264|ref|YP_182742.1| lysine/arginine/ornithine transport system kinase [Thermococcus
           kodakarensis KOD1]
 gi|57158588|dbj|BAD84518.1| lysine/arginine/ornithine transport system kinase [Thermococcus
           kodakarensis KOD1]
          Length = 319

 Score = 39.5 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 55/152 (36%), Gaps = 11/152 (7%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++ L+ +    D      L  + E   +    +     + ++ + +++ + G  G GK+T
Sbjct: 2   IDGLIERMLKGDKRAAARLITLVENDEEKAREIVSKI-YPYTGKAYIVGITGPPGAGKST 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSEIGSDAA 179
           ++ KL +   + G  V + A D    F   A+      ++  +                 
Sbjct: 61  LLDKLIRVAREEGKVVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLG 120

Query: 180 ALA---YEAFKQAQAKKVDVLIIDTAGRLHNN 208
            LA    +A K   A   DV+ ++T G     
Sbjct: 121 GLAKATNDAIKVLDAYGCDVIFVETVGVGQIE 152


>gi|319945232|ref|ZP_08019494.1| CobW/P47K family protein [Lautropia mirabilis ATCC 51599]
 gi|319741802|gb|EFV94227.1| CobW/P47K family protein [Lautropia mirabilis ATCC 51599]
          Length = 324

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 14/167 (8%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL------KIW 161
              P  IL  G  G GKTT++ K+     D GLK+ +   +       + L      +I 
Sbjct: 4   DLIPTTIL-TGFLGSGKTTLLNKI--LKDDHGLKIAVIENEFGEEGIDNDLLLQGDEQIV 60

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                              L  +A + A     D ++I+T G    +   +A    M   
Sbjct: 61  EMNNGCICCTVRGDLVRILLDLKARRDAGEIHFDRVVIETTGLA--DPGPVAQTFFMDDE 118

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-TGLIMTKMD 267
           + +   +   +++ V+DA  G   L + +   A  G    ++++K D
Sbjct: 119 VAQ--SYMLDAIITVVDALHGNQQLDETKEAQAQVGFADRILISKTD 163


>gi|297569152|ref|YP_003690496.1| Cobyrinic acid ac-diamide synthase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925067|gb|ADH85877.1| Cobyrinic acid ac-diamide synthase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 252

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           P +I + G  GVGKTTV   L   +       +LA 
Sbjct: 2   PKIIAMAGKGGVGKTTVTALLLNYLLAEKKTPVLAV 37


>gi|227513593|ref|ZP_03943642.1| deoxyguanosine kinase [Lactobacillus buchneri ATCC 11577]
 gi|227083109|gb|EEI18421.1| deoxyguanosine kinase [Lactobacillus buchneri ATCC 11577]
          Length = 217

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM 135
           VI+  G+ GVGKTT+ GK++  +
Sbjct: 2   VIITAGMIGVGKTTLTGKIAAHL 24


>gi|188026271|ref|ZP_02961508.2| hypothetical protein PROSTU_03543 [Providencia stuartii ATCC 25827]
 gi|188022297|gb|EDU60337.1| hypothetical protein PROSTU_03543 [Providencia stuartii ATCC 25827]
          Length = 594

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 98  PLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           P       + S + H  I+++G  GVGKTT+   ++ K+++ GL V L   D    AA  
Sbjct: 324 PSLSELVGEISQQQHGLIMLMGKGGVGKTTIAASIAVKLAEKGLDVHLTTSD---PAAHV 380

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
           +  +     +      +  ++         +           +D  GR      L +   
Sbjct: 381 ESTLDGVLPNLQVSRIDPIAETERYRNYVLETKGKD------LDAEGRALLEEDLRSPCT 434

Query: 217 KMIRVLKR 224
           + I V + 
Sbjct: 435 EEIAVFQA 442


>gi|169351486|ref|ZP_02868424.1| hypothetical protein CLOSPI_02266 [Clostridium spiroforme DSM 1552]
 gi|169291708|gb|EDS73841.1| hypothetical protein CLOSPI_02266 [Clostridium spiroforme DSM 1552]
          Length = 591

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 11/113 (9%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP-------LSKPFNWD 106
           I++    A   +IVE L  +    + S  + + +V   +    +        L K  N +
Sbjct: 317 IQA--AFAALSRIVELLEEQEEIPEASPAKHIENVQGNVQFEHVQFGYYEENLMKDLNVN 374

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
                 ++ +VG  G GKTT+I  L +     G  + +   D  R    ++L+
Sbjct: 375 VKSG-QMVAIVGPTGAGKTTIINLLLRFYDVKGGSIKIDGVDI-RDLPREELR 425


>gi|156936833|ref|YP_001434629.1| ATPase RIL [Ignicoccus hospitalis KIN4/I]
 gi|156565817|gb|ABU81222.1| ABC transporter related [Ignicoccus hospitalis KIN4/I]
          Length = 604

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 24/153 (15%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           EL  K  + +V ++         + K L       N    HR  +I ++G NG+GK+T I
Sbjct: 333 ELREKVVSTEVYLEWPF------MTKKLGDFVLEVNPGEIHRGEIIGILGPNGIGKSTFI 386

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             ++  +            D      + QL+            +           +  ++
Sbjct: 387 KLIAGILKPDN-------ADFV----LPQLR----LAYKPQYVTHEMFGKNETVKDVLRK 431

Query: 189 AQAKKVDV---LIIDTAGRLHNNSILMAGIGKM 218
            ++  +D      ++   RL  N +L   +  +
Sbjct: 432 VRSDFLDTSSWYYVEVVKRLGLNRLLEKEVKHL 464


>gi|94969610|ref|YP_591658.1| protein-tyrosine kinase [Candidatus Koribacter versatilis Ellin345]
 gi|94551660|gb|ABF41584.1| Protein-tyrosine kinase [Candidatus Koribacter versatilis Ellin345]
          Length = 711

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 17/177 (9%)

Query: 108 SHRPHVILVVGVN-GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +  P V +V G   G GKTTV   L++ +   G +V+L   D  R +    LK+      
Sbjct: 513 AGSPRVTVVSGPAPGEGKTTVAIHLAQSLGRLGRRVLLVDADLHRPSVHKYLKLDNSSAG 572

Query: 167 A-------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG------RLHNNSILMA 213
                     +  +  +    +A      A  + +D +     G      R   + I++ 
Sbjct: 573 LSELLTDSHLLSGDSRTLPDGIALLLAGTATEQAIDHVESPRMGALIDHWRSTYDDIVID 632

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDA-TTGQNALRQVEMFHAV--AGTTGLIMTKMD 267
               +             +VL VL A  T  +AL +            +G ++ ++D
Sbjct: 633 TPPVLAYSNAVSISKFADAVLLVLRAGQTSSDALVRSLEIFEQSGVKVSGAVLNRLD 689


>gi|28392844|ref|NP_786906.1| putative NTPase protein [Canine calicivirus]
          Length = 356

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 29/187 (15%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKI---------VEELLTKRYAKDVSVQRVLYDVS 89
           ++ V ++L      L  +D    V Q I          E+L  +   K +      Y   
Sbjct: 62  NESVVDDLSTKVIGLTEAD-NPTVTQDIDAVTNLQIMAEQLKDQIKLKTLDPTFQPY--L 118

Query: 90  ELIHKMLMPLSKPFNWDFSHR--------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
            ++  ++       +     +        P  I++ G  G GKTT+   ++ ++S     
Sbjct: 119 PVLRNLMSTTDSVISHCAKRKALATQRTAPVCIILTGPAGCGKTTLAYAIANRLSAQKPS 178

Query: 142 VMLAAGDTFRS------AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           V+    D   +        ID+     D    +FV   + ++   L  +  +        
Sbjct: 179 VLNLNIDHHDAYTGNEVCIIDEFDSNPDSKFVEFVVEMVNTNPMLLNCDLIENKGKTFSS 238

Query: 196 VLIIDTA 202
             +I T+
Sbjct: 239 KYVIMTS 245


>gi|27881466|ref|NP_777373.1| non-structural polyprotein [Canine calicivirus]
 gi|55583961|sp|Q8V736|POLG_CACV4 RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein
           p18; Contains: RecName: Full=Protein p32; Contains:
           RecName: Full=NTPase; AltName: Full=p39; Contains:
           RecName: Full=Protein p30; Contains: RecName: Full=Viral
           genome-linked protein; AltName: Full=VPg; AltName:
           Full=p13; Contains: RecName: Full=Protease-polymerase;
           Short=Pro-Pol
 gi|18149158|dbj|BAB83601.1| non-structural polyprotein [Canine calicivirus]
          Length = 1929

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 29/187 (15%)

Query: 42  DDGVREELEDL---LIRSDIGVAVAQKI---------VEELLTKRYAKDVSVQRVLYDVS 89
           ++ V ++L      L  +D    V Q I          E+L  +   K +      Y   
Sbjct: 530 NESVVDDLSTKVIGLTEAD-NPTVTQDIDAVTNLQIMAEQLKDQIKLKTLDPTFQPY--L 586

Query: 90  ELIHKMLMPLSKPFNWDFSHR--------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
            ++  ++       +     +        P  I++ G  G GKTT+   ++ ++S     
Sbjct: 587 PVLRNLMSTTDSVISHCAKRKALATQRTAPVCIILTGPAGCGKTTLAYAIANRLSAQKPS 646

Query: 142 VMLAAGDTFRS------AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           V+    D   +        ID+     D    +FV   + ++   L  +  +        
Sbjct: 647 VLNLNIDHHDAYTGNEVCIIDEFDSNPDSKFVEFVVEMVNTNPMLLNCDLIENKGKTFSS 706

Query: 196 VLIIDTA 202
             +I T+
Sbjct: 707 KYVIMTS 713


>gi|330508261|ref|YP_004384689.1| hypothetical protein MCON_2414 [Methanosaeta concilii GP-6]
 gi|328929069|gb|AEB68871.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 207

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS-AAIDQLKIWADRTSADFV 170
            +I  VG+ G GK     K+++++       ++  GD  R  AA   L+           
Sbjct: 6   KIIGFVGLPGSGK-GEASKIAREL----GLSVVVMGDVIRQEAARLGLEPTDQNLGRIGN 60

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
                    A+A +  K A+    D++++D
Sbjct: 61  ALREKDGPEAIARKTLKMARKTGRDLVVVD 90


>gi|330467288|ref|YP_004405031.1| putative ATP-binding protein [Verrucosispora maris AB-18-032]
 gi|328810259|gb|AEB44431.1| putative ATP-binding protein [Verrucosispora maris AB-18-032]
          Length = 324

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           I  VG  G GKTT+    ++ ++     V+    D  +  A+
Sbjct: 3   IAFVGKGGSGKTTLAALFARHLAAGDRPVLAIDADINQHLAV 44


>gi|315638053|ref|ZP_07893238.1| ATP/GTP-binding protein [Campylobacter upsaliensis JV21]
 gi|315481901|gb|EFU72520.1| ATP/GTP-binding protein [Campylobacter upsaliensis JV21]
          Length = 365

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              +K ++E+L     KD+     L  +   I +         N     +  V++  G  
Sbjct: 52  DTLRKDIDEVLKDLNLKDIK----LEILQPQIEEEKSNSKSGKNVAPQVKNFVMVSSGKG 107

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           GVGK+T    L+  M+  GLKV +   D +
Sbjct: 108 GVGKSTTALNLAISMAKMGLKVGIVDADIY 137


>gi|295102061|emb|CBK99606.1| ATPases with chaperone activity, ATP-binding subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 766

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 20/140 (14%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           EL  K   +D      ++ V++ + +    LS         RP   + VG  GVGKT ++
Sbjct: 473 ELKKKIIGQD----EAVHLVAQAVKRSRADLSG------RRRPASFIFVGPTGVGKTELV 522

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            +L+ ++ D    ++            D  +       +  + S  G      A +  ++
Sbjct: 523 KQLANQLFDGPDPLIRL----------DMSEYMEKYAVSRMIGSPPGYVGYEEAGQLTEK 572

Query: 189 AQAKKVDVLIIDTAGRLHNN 208
            + +   V++ D   + H +
Sbjct: 573 VRRRPYSVVLFDEIEKAHPD 592


>gi|225387376|ref|ZP_03757140.1| hypothetical protein CLOSTASPAR_01129 [Clostridium asparagiforme DSM
            15981]
 gi|225046508|gb|EEG56754.1| hypothetical protein CLOSTASPAR_01129 [Clostridium asparagiforme DSM
            15981]
          Length = 1690

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 74/224 (33%), Gaps = 23/224 (10%)

Query: 30   EGITDIISSRRLD--DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
              +T+      +D  + + E  E+ L R+     V Q I E         DV  Q    +
Sbjct: 1151 RTVTETYGKELIDNYEAILEANEERLGRARKQFKVEQDITETF------DDVKGQETAVE 1204

Query: 88   VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT----VIGKLSKKMSDAGLKVM 143
                +  ML   S  +    +  P   L+VG  G GKT     V G+ ++++ +      
Sbjct: 1205 KLGEVVDML-AHSDAYRLAGARLPKGALLVGPPGTGKTLLARAVAGETARRVREMDPGCS 1263

Query: 144  LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
                     AA D L +    T AD V         A A            D +      
Sbjct: 1264 KGRTAFIALAATD-LLVGGLSTGADRVRDLFLQAQKAEAASVVIFIDEL--DAVAKARGA 1320

Query: 204  RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            R   + +L       I +L  +D  + +  L VL AT     L 
Sbjct: 1321 RGGADEVL-------IALLACMDGFSGNQNLFVLGATNRPEILD 1357


>gi|171913860|ref|ZP_02929330.1| ATP-dependent helicase HrpA [Verrucomicrobium spinosum DSM 4136]
          Length = 1241

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 16/134 (11%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            V+++ G  G GKTT + K+  +    G +  +      R AA+   +  A+     +  
Sbjct: 27  QVVVLAGETGSGKTTQLPKMCLEAMPEGTRGQIGCTQPRRVAAMSVSRRVAEELGVQWGR 86

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLDPHA 229
                             + +  D    DT  +   + IL+A I    ++R    L    
Sbjct: 87  EVGC--------------KMRFNDDTSRDTRIKFMTDGILLAEIQSDPLLRNYAMLILDE 132

Query: 230 PHSVLQVLDATTGQ 243
            H     +D   G 
Sbjct: 133 AHERSLNIDFLLGY 146


>gi|33596703|ref|NP_884346.1| branched chain amino acid ABC transporter ATP-binding protein
           [Bordetella parapertussis 12822]
 gi|33573404|emb|CAE37388.1| Putative branched-chain amino acid transporter ATP-binding protein
           [Bordetella parapertussis]
          Length = 283

 Score = 39.5 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           V++ + K     +   N D   R   I  ++G NG GKTT    LSK +  +  ++    
Sbjct: 40  VAQGLTKTFGGFTAVNNVDLRVRAQTIHALIGPNGAGKTTCFNLLSKFLQPSAGRIYYQG 99

Query: 147 GDTFRSAAID 156
            D  R+A  D
Sbjct: 100 SDITRAAPED 109


>gi|332212592|ref|XP_003255403.1| PREDICTED: twinkle protein, mitochondrial-like isoform 2 [Nomascus
           leucogenys]
          Length = 404

 Score = 39.5 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 61/214 (28%), Gaps = 36/214 (16%)

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRP--HVIL----------VVGVNGVGKTTVIGKL 131
               + E +   L  + +     +S  P  + IL            G  G GKTT I + 
Sbjct: 191 CFRQLREEVLGELSNMEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEY 250

Query: 132 SKKMSDAGLKVMLAAGDT--FRSAAI-----------DQLKIWADRTS------ADFVCS 172
           +  +   G+  +  + +    R A +           DQL  +             F+  
Sbjct: 251 ALDLCSQGVNTLWGSFEISNVRLARVMLTQFAEGRLEDQLDKYDHWADRFEDLPLYFMTF 310

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIID----TAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                   +            +  ++ID      G    ++  +A    +I V ++    
Sbjct: 311 HGQQSIRTVIDTMQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKFATD 370

Query: 229 APHSVLQVLDATTGQNALR-QVEMFHAVAGTTGL 261
               V  V+      +    Q       A  +GL
Sbjct: 371 NNCHVTLVIHPRKEDDDKELQTASIFGSAKVSGL 404


>gi|311900327|dbj|BAJ32735.1| putative ATPase [Kitasatospora setae KM-6054]
          Length = 1124

 Score = 39.5 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 58/178 (32%), Gaps = 30/178 (16%)

Query: 52   LLIRSDIGVAVAQ--------KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
             L+  D+  A  +        +++ EL  +      + +  + D+ +L+ +      +  
Sbjct: 833  QLLAEDVAPAATRPAGRGDGTELLAEL--RAMVGLPAAKEQVEDLVDLLRQTRR--REEA 888

Query: 104  NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS-------AAID 156
                +   H ++  G  G GKTTV     + +++ G+       +T R+           
Sbjct: 889  GLPTARISHHLVFAGPPGTGKTTVARLYGRLLAELGVLPGGQLVETARADLVGRYIGHTA 948

Query: 157  QLKIWA---DRTSADFVCSEIGSDAAA--------LAYEAFKQAQAKKVDVLIIDTAG 203
            QL   A    R    F+                   A +   +      D +++  AG
Sbjct: 949  QLTREAFDRARGGVLFIDEAYTLTPRHGSGADFGQEAVDTLMKLMEDHRDEVVVIAAG 1006


>gi|292669436|ref|ZP_06602862.1| ATP-dependent metalloprotease FtsH [Selenomonas noxia ATCC 43541]
 gi|292648889|gb|EFF66861.1| ATP-dependent metalloprotease FtsH [Selenomonas noxia ATCC 43541]
          Length = 649

 Score = 39.5 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 70/220 (31%), Gaps = 27/220 (12%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K    DV+         E + + L  +   FN   +  P  +L+ G  G GKT     
Sbjct: 139 KKKVTFADVAGADEAKQELEEVVEFLK-MPDKFNELGARIPKGVLLFGPPGTGKT----L 193

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K ++                 A  Q    +     +       S    L  +A K A 
Sbjct: 194 LAKAVAGE---------------AGVQFFTISGSDFVEMFVGVGASRVRDLFEQAKKSAP 238

Query: 191 AKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +  ID  GR     +          + ++L  +D  A +  + ++ AT   + L 
Sbjct: 239 CIVF-IDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFASNEGIIIIAATNRPDVLD 297

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
              +         +++ K D   RG   I  V T   P+ 
Sbjct: 298 PALLRPGRFD-RQIVVDKPD--VRGREAILKVHTKGKPIA 334


>gi|152973478|ref|YP_001338529.1| arsenical pump-driving ATPase (arsenite-translocating ATPase)
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|329999968|ref|ZP_08303600.1| arsenite-transporting ATPase [Klebsiella sp. MS 92-3]
 gi|6647418|sp|O50593|ARSA_ACIMU RecName: Full=Arsenical pump-driving ATPase; AltName:
           Full=Arsenical resistance ATPase; AltName:
           Full=Arsenite-translocating ATPase; AltName:
           Full=Arsenite-transporting ATPase
 gi|2879919|dbj|BAA24822.1| ArsA [Acidiphilium multivorum]
 gi|150958270|gb|ABR80299.1| Arsenical pump-driving ATPase (Arsenite-translocating ATPase)
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|328538118|gb|EGF64279.1| arsenite-transporting ATPase [Klebsiella sp. MS 92-3]
          Length = 583

 Score = 39.5 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ +++D G  V L   D    AA     +     +       
Sbjct: 330 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAAHLSTTLNGSLKNLQVSRIN 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    K  D+   D AG+      L +   + I V + 
Sbjct: 387 PHDETERYRQHVLE---TKGRDL---DEAGKRLLEEDLRSPCTEEIAVFQA 431


>gi|94985423|ref|YP_604787.1| arginine/ornithine transport system ATPase [Deinococcus
           geothermalis DSM 11300]
 gi|94555704|gb|ABF45618.1| methylmalonyl-CoA mutase metallochaperone MeaB [Deinococcus
           geothermalis DSM 11300]
          Length = 351

 Score = 39.5 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 27/166 (16%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAA--------IDQLKIWADRT 165
           + GV GVGK+T I  L   ++DAG +V + A D  + R+          + +L +  +  
Sbjct: 89  LTGVPGVGKSTFIEALGTYLADAGHRVAVLAVDPSSARTGGSILGDKTRMPRLTVHPNAF 148

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                        A    EA    +A   DV++I+T G   + + + A            
Sbjct: 149 IRPSPSGGTLGGVARRTREAITLCEAAGYDVVLIETVGVGQSETQVAAMTDLF------- 201

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
                  VL  L      + L+ ++           ++ K D   +
Sbjct: 202 -------VLLTLPNA--GDELQGIKRGIMELA-DLCVVNKADTDPK 237


>gi|332528350|ref|ZP_08404350.1| ATP-dependent helicase HrpA [Hylemonella gracilis ATCC 19624]
 gi|332042221|gb|EGI78547.1| ATP-dependent helicase HrpA [Hylemonella gracilis ATCC 19624]
          Length = 1347

 Score = 39.5 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 11/140 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI+V G  G GKTT + K++  +    L          R     Q +  A  + A  + 
Sbjct: 31  QVIIVCGETGSGKTTQLPKIALSLGRGKLNYPAGQRG--RLIGHTQPRRIAASSVAKRIA 88

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLDPHA 229
            E+ +    +     +       D L  D + +L  + IL+A      ++     L    
Sbjct: 89  EELQTPLGEVVGYKVR-----FNDRLGKDASVKLMTDGILLAETQTDPLLNAYDTLIIDE 143

Query: 230 PHSVLQVLDATTGQNALRQV 249
            H     +D   G   LRQ+
Sbjct: 144 AHERSLNIDFLLGY--LRQI 161


>gi|297832780|ref|XP_002884272.1| hypothetical protein ARALYDRAFT_896083 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330112|gb|EFH60531.1| hypothetical protein ARALYDRAFT_896083 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 821

 Score = 39.5 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 79/245 (32%), Gaps = 54/245 (22%)

Query: 85  LYDVSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
              + EL   +L P+   +PF       P  IL  G  G GKT    KL+  +++     
Sbjct: 239 KKVLDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKT----KLANAIANE---- 290

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI---I 199
                  F+ +A +             V S +   +     E F +A      ++    I
Sbjct: 291 --VGVPFFKISATE-------------VVSGVSGASEENIRELFSKAYRTAPSIVFIDEI 335

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLD----------PHAPHSVLQVLDATTGQNALRQV 249
           D  G    N         + ++L  +D          P +    + V+ AT   +AL   
Sbjct: 336 DAIGSKRENQQREMEKRIVTQLLTCMDGPGNKGEKNVPDSSAGFVLVIGATNRPDALDPA 395

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE-PFVAKDFSA 308
                      + +T  D  AR   ++ +V             + +  LE PF  K  + 
Sbjct: 396 LRRSGRFECE-IALTAPDEDARA-EILSVVA------------QKLR-LEGPFDKKRIAR 440

Query: 309 VITGC 313
           +  G 
Sbjct: 441 LTPGF 445


>gi|237730240|ref|ZP_04560721.1| arsenical pump-driving ATPase [Citrobacter sp. 30_2]
 gi|226905779|gb|EEH91697.1| arsenical pump-driving ATPase [Citrobacter sp. 30_2]
          Length = 583

 Score = 39.5 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ +++D G  V L   D    AA     +     +       
Sbjct: 330 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAAHLSTTLNGSLKNLQVSRIN 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    K  D+   D AG+      L +   + I V + 
Sbjct: 387 PHDETERYRQHVLE---TKGRDL---DEAGKRLLEEDLRSPCTEEIAVFQA 431


>gi|238584670|ref|XP_002390632.1| hypothetical protein MPER_10056 [Moniliophthora perniciosa FA553]
 gi|215454271|gb|EEB91562.1| hypothetical protein MPER_10056 [Moniliophthora perniciosa FA553]
          Length = 545

 Score = 39.5 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 22/94 (23%)

Query: 49  LEDLL--IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           LED L  + S +G+   ++ V  L+      +    +    +  L++++           
Sbjct: 230 LEDALKELDSLVGLEAVKQTVRNLVKVAQVNEQRELQGKKPLEVLLNRI----------- 278

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
                     +G +G GKTTV    +K +   G 
Sbjct: 279 ---------FLGPSGTGKTTVAKVYAKILKQLGY 303


>gi|84494507|ref|ZP_00993626.1| putative transport system kinase [Janibacter sp. HTCC2649]
 gi|84384000|gb|EAP99880.1| putative transport system kinase [Janibacter sp. HTCC2649]
          Length = 303

 Score = 39.5 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 27/169 (15%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADR 164
           H+I + G  GVGK+T    L         +V + A D        A+      ++     
Sbjct: 30  HIIGLTGSPGVGKSTTTAALIAAFRAQDRRVAVLAVDPSSPFSGGALLGDRIRMEQHGTD 89

Query: 165 TSADFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                           L++   +A +   A   DV++++T G   +              
Sbjct: 90  PGVFIRSVASRGHLGGLSFATPQALRVLDAAGFDVVLLETVGVGQSE------------- 136

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
              ++  A      V+ A    + ++  +      G    ++ K D   
Sbjct: 137 ---VEVAARADTTVVIVAPGMGDGIQAAKAGILEIG-DVFVVNKADRDG 181


>gi|331090016|ref|ZP_08338906.1| hypothetical protein HMPREF1025_02489 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402930|gb|EGG82496.1| hypothetical protein HMPREF1025_02489 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 573

 Score = 39.5 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIH---------KMLMPLSKPFNWDFSHRPHVI 114
           ++ ++ + T+   KD S    L DV  L+               +    +++      V 
Sbjct: 310 RRFLDVMETEPEIKDASDAEELTDVKGLVRYENVSFHYADDDTSVLSHISFEIPAGRSV- 368

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
            +VG +G GKTT+   L +     G ++ +   D  R+  +  L+        D      
Sbjct: 369 ALVGPSGSGKTTICSLLPRFYDVTGGRITIDGKDV-RTLTLKSLRSHIGVVQQDVY---- 423

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
               +    +     +    D  IID A R + + 
Sbjct: 424 --LFSGTIRDNIAYGKPDASDEEIIDAAKRANIHD 456


>gi|298204560|emb|CBI23835.3| unnamed protein product [Vitis vinifera]
          Length = 777

 Score = 39.5 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 41  LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY--DVS-ELIHKMLM 97
           +DD   E L   +  SD    V   I E L  +     +  +  +Y  DV+ E I K L+
Sbjct: 87  VDDITTEALRRKM-ESDSQTQVRNIIFENLSKRWPTTSLVDESGVYGRDVNREEIVKFLL 145

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             +   N     +  VI +VG+ G+GKTT + KL
Sbjct: 146 SHNTSGN-----KISVIALVGMGGIGKTT-LAKL 173


>gi|216263423|ref|ZP_03435418.1| ATP-dependent Clp protease, subunit C [Borrelia afzelii ACA-1]
 gi|215980267|gb|EEC21088.1| ATP-dependent Clp protease, subunit C [Borrelia afzelii ACA-1]
          Length = 715

 Score = 39.5 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 21/105 (20%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           TS  +++ I +I+S  +  + ++EE+ +L           ++I  ++  K   +  +V  
Sbjct: 384 TSDDIQKAINEILS-IKTTNNIKEEISEL-----------KEIESKINQKVIGQKHAVGE 431

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           ++ ++ + +   L   SKP           IL++G NG GKTT+I
Sbjct: 432 LIKEIIK-VKLGLNDDSKPLTS--------ILLIGSNGCGKTTLI 467


>gi|126730707|ref|ZP_01746517.1| virulence VirC1 protein [Sagittula stellata E-37]
 gi|126708873|gb|EBA07929.1| virulence VirC1 protein [Sagittula stellata E-37]
          Length = 239

 Score = 39.5 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 26/179 (14%)

Query: 121 GVGKTT-VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTT     +S  ++  G +VML   D+ R       +  A   S+  +CS      A
Sbjct: 17  GSGKTTLSRALISAAIAA-GRRVMLIDTDSTRVLGAWHARAAAGGLSSPLLCSATVESVA 75

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
            +  +  +   A   D + IDTAG         A     I VL      A H V  V+ +
Sbjct: 76  GVEDKIDQVYMAGTADFIFIDTAGVG-------AEWSDGIAVL------ADHIVTPVMLS 122

Query: 240 TTGQNALRQVEMFHAV----------AGTTGLIMTKMD-GTARGGGLIPIVVTHKIPVY 287
           T+  +   Q   +                  +++  +D  T R    +      + PV 
Sbjct: 123 TSDFDVGTQTADWFEKLKSRVDDPSSLPRHHVVLNMVDPKTTRADAALIEEALTRFPVI 181


>gi|319425618|gb|ADV53692.1| arsenite-activated ATPase ArsA [Shewanella putrefaciens 200]
          Length = 590

 Score = 39.5 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ ++++ GL V L   D    AA  +  +     +      +
Sbjct: 335 IMLMGKGGVGKTTLAAAIAVRLAELGLDVHLTTSD---PAAHLEHTLHGQLVNLQVSRID 391

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                     +              +D  G+      L +   + I V + 
Sbjct: 392 PVDVTTRYREQVLATKGKD------LDAQGKALLEEDLRSPCTEEIAVFQA 436


>gi|291236013|ref|XP_002737939.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 397

 Score = 39.5 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 67/185 (36%), Gaps = 35/185 (18%)

Query: 50  EDLLIRSDIGVAVAQKIVEELLTKRYAKD-----------VSVQRVLYDVSELIHKMLMP 98
           ED L  +D      +++V+ L     AK             SV R    ++E++   ++ 
Sbjct: 46  EDALTTAD------ERLVQRLYEGVVAKKRASLAEAITLVESVSRKKRALAEVLLTDILG 99

Query: 99  LSKPFNWDFSHRPHVIL--VVGVNGVGKTTVI---GKLSKKMSDAGLKVMLAAGDTFRSA 153
             +        +P      + G  G GK++ I   GK    ++  G KV + A D   S+
Sbjct: 100 YLRKKEQQNDGKPTSFRAGLTGPPGAGKSSFIECFGK---YLTGMGHKVAVLAVDPSSSS 156

Query: 154 AID-------QLKIWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAG 203
                     ++   +   +A    S    +   +     EA    +A   DV++++T G
Sbjct: 157 TGGSLLGDKTRMIELSRDMNAYIRPSPTSGNMGGVTRSTNEAILLCEAAGYDVVLVETVG 216

Query: 204 RLHNN 208
              + 
Sbjct: 217 VGQSE 221


>gi|148910226|gb|ABR18194.1| unknown [Picea sitchensis]
          Length = 579

 Score = 39.5 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            +   +V+++L K     + V +    + E    + M +S       S +P ++ +VG+ 
Sbjct: 195 QLVDDVVQQVLKKVRKPPLDVAKFPTGLVEKSKDLKMTVSLQRK---SGKPTIVAIVGLG 251

Query: 121 GVGKTTVIGK 130
           G+GKTT + K
Sbjct: 252 GIGKTT-LAK 260


>gi|23011206|ref|ZP_00051636.1| COG3265: Gluconate kinase [Magnetospirillum magnetotacticum MS-1]
          Length = 105

 Score = 39.5 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            +P +      P  ++V+GV G GKTTV   L++++         A  D F   A
Sbjct: 9   DRPDDAGNQPLPQHLVVMGVAGSGKTTVATLLAQRL-----GTEYAEADRFHPQA 58


>gi|332711178|ref|ZP_08431111.1| WD-40 repeat-containing protein [Lyngbya majuscula 3L]
 gi|332349992|gb|EGJ29599.1| WD-40 repeat-containing protein [Lyngbya majuscula 3L]
          Length = 1197

 Score = 39.5 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 20/128 (15%)

Query: 31  GITDIISSRRLDDGVREELEDLL-IR----S--DIGVA--VAQKI----VEELLTKRYAK 77
            +++ ++ + +D    EEL   L +     +  D+ +       +    VE+L ++   +
Sbjct: 40  TVSNFLTGKPVDYITFEELSQKLSLEWRAIANLDVDLPSQAVDDVLSQTVEDLPSQTVDQ 99

Query: 78  D--VSVQRVLYDVSELI-----HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              ++      D+ E I     +     L+    W  +    +I ++G+ G+GKTT+  K
Sbjct: 100 KPQITTSPKRQDLGEAIDVTNFYGRKEELATLKQWIINDHCRLITLIGMGGIGKTTLSVK 159

Query: 131 LSKKMSDA 138
           L++ +   
Sbjct: 160 LAQLLQSE 167


>gi|325290044|ref|YP_004266225.1| type II secretion system protein E [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965445|gb|ADY56224.1| type II secretion system protein E [Syntrophobotulus glycolicus DSM
           8271]
          Length = 499

 Score = 39.5 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 19/109 (17%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
            G  +  +I++    +R   D+ +Q  +      I K+L             +PH +++V
Sbjct: 217 FGEKIVTRILDSEFAERSLADLGMQEKIKT---EIQKLL------------KKPHGLVLV 261

Query: 118 -GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT--FRSAAIDQLKIWAD 163
            G  G GKTT +  L K++      ++    D   +R   ++Q ++   
Sbjct: 262 SGPTGSGKTTTLYALCKELPSDIYNIVSIE-DPIEYRLKGVNQAQVQVK 309


>gi|312880139|ref|ZP_07739939.1| LAO/AO transport system ATPase [Aminomonas paucivorans DSM 12260]
 gi|310783430|gb|EFQ23828.1| LAO/AO transport system ATPase [Aminomonas paucivorans DSM 12260]
          Length = 314

 Score = 39.5 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 11/152 (7%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L+ +  + +      L  + E     +  + K   +  S +  +I + G  G GK+T
Sbjct: 1   MDQLIQRALSGEPRSVARLISLVESDSPFVERVMKQL-YPHSGKAQIIGITGSPGAGKST 59

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIGSDAA 179
           ++ KL ++    G +V + A D        AI      ++  A                 
Sbjct: 60  LVDKLIRRFKKDGKQVGIIAVDPSSPFSGGAILGDRLRMQDHALDPDVFIRSMGTRGSLG 119

Query: 180 ALAYEAFKQA---QAKKVDVLIIDTAGRLHNN 208
            ++    + A    A   DV++I+T G   + 
Sbjct: 120 GVSRATHEAALILDACGKDVILIETVGVGQSE 151


>gi|261879036|ref|ZP_06005463.1| phosphoribulokinase [Prevotella bergensis DSM 17361]
 gi|270334317|gb|EFA45103.1| phosphoribulokinase [Prevotella bergensis DSM 17361]
          Length = 553

 Score = 39.5 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G+       E +   R    ++V   L +    I K+   ++   N         IL+ 
Sbjct: 243 MGMRTVGDFNEFVQNGRATNLINVSEALQEKK--IAKIAEQIAARKNVKL------ILLA 294

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           G +  GKTT   +LS ++   G++ +  + D +
Sbjct: 295 GPSSSGKTTTCKRLSIQLLTNGIRPLQISLDDY 327


>gi|257439400|ref|ZP_05615155.1| phosphoribulokinase/uridine kinase family protein [Faecalibacterium
           prausnitzii A2-165]
 gi|257198275|gb|EEU96559.1| phosphoribulokinase/uridine kinase family protein [Faecalibacterium
           prausnitzii A2-165]
          Length = 312

 Score = 39.5 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-TFRSAAI 155
            ++++ G +  GKTT   KL++++   G    + + D  FR A  
Sbjct: 51  KIVMLTGPSASGKTTSAHKLAEELIRQGTYAHVVSLDNFFRGAEF 95


>gi|170743473|ref|YP_001772128.1| plasmid partitioning protein RepA [Methylobacterium sp. 4-46]
 gi|168197747|gb|ACA19694.1| plasmid partitioning protein RepA [Methylobacterium sp. 4-46]
          Length = 405

 Score = 39.5 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 91  LIHKML--MPLSKPFNWDFSHRPHVILVVGVN---GVGKTTVIGKLSKKMSDAGLKVMLA 145
            + ++L   P SK +    +   H  ++  VN   G GKTT    L++ ++  G +V+  
Sbjct: 98  ELRRLLDDGPKSKGYVPHRAGGEHCQVLAVVNFKGGSGKTTTAAHLAQYLALKGYRVLAV 157

Query: 146 AGD 148
             D
Sbjct: 158 DLD 160


>gi|325569876|ref|ZP_08145870.1| ATP-dependent Clp protease [Enterococcus casseliflavus ATCC 12755]
 gi|325156999|gb|EGC69167.1| ATP-dependent Clp protease [Enterococcus casseliflavus ATCC 12755]
          Length = 759

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 79/217 (36%), Gaps = 37/217 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLK-LKEGITDIISSRRLDDGVRE-------ELEDLL 53
           ++++   E  ++ R           + + E  T +I+ + ++  V E       EL++  
Sbjct: 375 ASREEDFEKAAYYRDQINKLQKMKERQISEEETPVITEKDMEQIVEERTNIPVGELKEK- 433

Query: 54  IRSDIGVAVAQ--KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
                     Q   + ++L  K   +D ++ +    V++ I +  + L K      S   
Sbjct: 434 -------EQTQLRNLADDLKAKVIGQDEAIDK----VAKAIRRNRVGLGKQNRPIGS--- 479

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
              L VG  GVGKT +  +L+      G +  +   D          +     + +  + 
Sbjct: 480 --FLFVGPTGVGKTELAKQLA--YEMFGSEESMIRFDMS--------EYMEKHSVSKLIG 527

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           S  G      A +  ++ +     ++++D   + H +
Sbjct: 528 SPPGYVGYEEAGQLTEKVRRNPYSLILLDEVEKAHPD 564


>gi|316975253|gb|EFV58702.1| putative ATPase, AAA family [Trichinella spiralis]
          Length = 691

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 23/184 (12%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW-DFSHR-PHVILVVGVNGVGK 124
           ++E+  +    D S  + + +  + + +++  L +P  + +   R P  +L+VG  G+GK
Sbjct: 210 IKEISPEEILVDFSDVKGIDEAKDELMQVVDFLKEPNKYLELGGRLPKGVLLVGPPGIGK 269

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L++ ++                A ++            FV           A  
Sbjct: 270 T----LLARAIAGE--------------AGVNFFNTSGSEFEEMFVGLGAKRVRDLFAAA 311

Query: 185 AFKQAQAKKVDVLIIDTAG-RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
             K      +D   ID+ G R  + SI+      + ++L  +D   P   + VL AT   
Sbjct: 312 REKAPCVVFIDE--IDSVGTRRTDQSIVSYPNQTLNQLLSEMDGFQPSEGVIVLAATNRH 369

Query: 244 NALR 247
             L 
Sbjct: 370 EDLD 373


>gi|317050294|ref|YP_004111410.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Desulfurispirillum indicum S5]
 gi|316945378|gb|ADU64854.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Desulfurispirillum indicum S5]
          Length = 177

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            + S+ P VI   G +G GKTT+I KL +++S  GLKV +   D  R
Sbjct: 3   LNASNIP-VIGFTGTSGSGKTTLIEKLVQQLSHRGLKVGVIKHDAHR 48


>gi|33866573|ref|NP_898132.1| ATPase [Synechococcus sp. WH 8102]
 gi|33633351|emb|CAE08556.1| MRP protein homolog [Synechococcus sp. WH 8102]
          Length = 358

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 62/205 (30%), Gaps = 27/205 (13%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G  GVGK+TV   L+  ++  GL V L   D +   A   L +           S     
Sbjct: 112 GKGGVGKSTVAVNLACALAQQGLSVGLLDADIYGPNAPTMLGVADRTPEVR--GSGDTQR 169

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV- 236
              +               L+ID    +     ++ G   +IR            VL V 
Sbjct: 170 MVPIESCGVAMVSMG----LLIDEHQPVIWRGPMLNG---IIRQFLYQADWGERDVLVVD 222

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMD-----GTARGGGLIPIVVTHKIPVYFLGV 291
           L   TG   L             G+++           AR G  + +     IPV  LGV
Sbjct: 223 LPPGTGDAQLSLA----QAVPMAGVVIVTTPQQVSLQDARRG--LAMFRQLGIPV--LGV 274

Query: 292 GEGINDLEPFVAKDFSAV--ITGCL 314
            E ++   P           + G  
Sbjct: 275 AENMSAFIP--PDRPEQRYALFGSG 297


>gi|325972599|ref|YP_004248790.1| ATPase AAA [Spirochaeta sp. Buddy]
 gi|324027837|gb|ADY14596.1| AAA ATPase [Spirochaeta sp. Buddy]
          Length = 561

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
               +++  +     L  K +  ++   N   S +   +L+ G +  GKTT   KL  ++
Sbjct: 261 GNQNTIESFIRLAEALQQKKIASIADQINLHSSVK--AVLIAGPSSSGKTTFAHKLGIQL 318

Query: 136 SDAGLKVMLAAGDTF 150
              G   +  + D++
Sbjct: 319 QVLGKNTIKISLDSY 333


>gi|300703422|ref|YP_003745024.1| replicatioN-associated recombination protein a [Ralstonia
           solanacearum CFBP2957]
 gi|299071085|emb|CBJ42394.1| Replication-associated recombination protein A [Ralstonia
           solanacearum CFBP2957]
          Length = 434

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 61/190 (32%), Gaps = 12/190 (6%)

Query: 86  YDVSELI-HKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKV 142
             + E+I    L+   KP    F S +PH ++  G  GVGKTT + +L +       + +
Sbjct: 20  KTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGKTT-LARLTASAFKCEFIAL 78

Query: 143 MLAAGDTFRS-AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                       A++Q + +  +  +  +  +          +A            +   
Sbjct: 79  SAVLSGVKDIREAMEQARQFLAQGKSTILFVDEIHRFNKSQQDALLPHVESG----LFTF 134

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
            G    N         + R    +        L++L     + AL  +E           
Sbjct: 135 IGATTENPSFEVNSALLSRAQVYVLKSLTDEELKLLLQRAQEKALGDLEFEDKAVD---T 191

Query: 262 IMTKMDGTAR 271
           I+   DG AR
Sbjct: 192 IVGYADGDAR 201


>gi|237750976|ref|ZP_04581456.1| partitioning protein [Helicobacter bilis ATCC 43879]
 gi|229373421|gb|EEO23812.1| partitioning protein [Helicobacter bilis ATCC 43879]
          Length = 219

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 11/145 (7%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT+   L+ + S    +V+L   D  RS+         +     F C     D+ A
Sbjct: 11  GSGKTTLSVNLAIQFSMDKKEVLLLDTDPQRSSEAFCNVRTNENKDLTFHCLSKIGDSLA 70

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
              ++ +     K D++IIDT GR      L   +  +  VL  L P     ++      
Sbjct: 71  REVKSLE----SKYDIIIIDTGGRDSKEMRLALIVADI--VLIPLIPSQYDIMVL----- 119

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTK 265
           +  N + +            +I+TK
Sbjct: 120 SKMNEIYEQARVFNEKSKAYIIVTK 144


>gi|242012196|ref|XP_002426821.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212511028|gb|EEB14083.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 502

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 23/183 (12%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            +    ++ E++  +  P  + F+      P  +L+VG  G GKT     L++ ++    
Sbjct: 77  AEEAKQELKEIVAFLRNP--EKFSILGGKLPKGVLLVGPPGTGKT----LLARAVAGEAK 130

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
                    F +A  +  ++   + +      ++   A  +A           +D   ID
Sbjct: 131 VP------FFHAAGPEFDEVLVGQGARRV--RDLFKAAKEVAPCVI------FIDE--ID 174

Query: 201 TAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           + G    NS L       + ++L  +D    +  + VL AT  +N L +  +        
Sbjct: 175 SVGSKRTNSTLHPYANQTINQLLSEMDGFHQNEGVIVLGATNRRNDLDKALLRPGRFDVE 234

Query: 260 GLI 262
            ++
Sbjct: 235 VMV 237


>gi|17530580|ref|NP_511238.1| arsenite acitvated ATPase [IncN plasmid R46]
 gi|1703363|sp|P52145|ARSA2_ECOLX RecName: Full=Arsenical pump-driving ATPase; AltName:
           Full=Arsenical resistance ATPase; AltName:
           Full=Arsenite-translocating ATPase; AltName:
           Full=Arsenite-transporting ATPase
 gi|1061416|gb|AAB09626.1| ArsA [Plasmid R46]
 gi|12002195|gb|AAG43231.1| arsenite acitvated ATPase [IncN plasmid R46]
          Length = 583

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++  ++D G  V L   D    AA     +     +       
Sbjct: 330 IMLMGKGGVGKTTMAAAIAVSLADKGFNVHLTTSD---PAAHLSTTLNGSLKNLQVSRIN 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    K  D+   D AG+      L +   + I V + 
Sbjct: 387 PHDETERYRQHVLE---TKGRDL---DEAGKRLLEEDLRSPCTEEIAVFQA 431


>gi|14520581|ref|NP_126056.1| cell division inhibitor [Pyrococcus abyssi GE5]
 gi|5457797|emb|CAB49287.1| minD-3 ATPase involved in chromosome partitioning, minD/MRP
           superfamily [Pyrococcus abyssi GE5]
          Length = 251

 Score = 39.5 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 11/129 (8%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI+V G  G GKTT    LS   + AG +V+   GD +       L +     +  +  
Sbjct: 2   AVIVVTGRGGAGKTTTAN-LSTYFAQAGYRVLAIDGDLYLPN----LGLHFALDNVKYTL 56

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
             I  +       A  + +      + +   G      +L     ++  V++ L     +
Sbjct: 57  HSIVKNPNMDPEWAIYRHEQTG---VYV-MPGSPRLEDVLGVSGQRLKDVIENLK--YKY 110

Query: 232 SVLQVLDAT 240
            V+ V   T
Sbjct: 111 PVIFVDSPT 119


>gi|332982784|ref|YP_004464225.1| ABC transporter-like protein [Mahella australiensis 50-1 BON]
 gi|332700462|gb|AEE97403.1| ABC transporter related protein [Mahella australiensis 50-1 BON]
          Length = 584

 Score = 39.5 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           V E L+  L     G     ++++   ++  K  A ++   +      ++       +  
Sbjct: 299 VMENLQQAL----AGAERVFEVLDTEPDVKEKENAIELKDVKGEITFEDVTFYYRPDVYV 354

Query: 102 PFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKM 135
             +  F  +P  ++  VG  GVGKTT++  L++  
Sbjct: 355 LKDISFEIKPGQMVAFVGPTGVGKTTIMSLLARFY 389


>gi|325284289|ref|YP_004256829.1| Cobyrinic acid ac-diamide synthase [Deinococcus proteolyticus MRP]
 gi|324316353|gb|ADY27466.1| Cobyrinic acid ac-diamide synthase [Deinococcus proteolyticus MRP]
          Length = 232

 Score = 39.5 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 106 DFSHRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           D S  P +I +  +  G GK+   G+L+  +S  G  V++   D     ++   +  A  
Sbjct: 21  DLSRLPQIIALCSLKGGAGKSMFSGQLAAVLSQHGKAVVVLDCDN--EGSMLSAQREAAN 78

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           +                   A + A+A  +  +IIDT G
Sbjct: 79  SGVPLPFPVEVGTRDGYKRRARELAEAGNM--VIIDTPG 115


>gi|312127426|ref|YP_003992300.1| ABC transporter-like protein [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777445|gb|ADQ06931.1| ABC transporter related protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 597

 Score = 39.5 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM----PLSKPFNWDFS---HR 110
           + +A  ++I E L T+   +D      L  +   I    +       KP   D S     
Sbjct: 322 VAMASTERIFEILDTQPDVQDAKDAYDLPPIRGEITFENVSFSYDEEKPVLKDVSFTIKA 381

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
              I +VG  G GKTT+I  +++       K+++   D
Sbjct: 382 GETIALVGETGAGKTTIINLIARFYDPQKGKILIDGHD 419


>gi|307946110|ref|ZP_07661445.1| LAO/AO transport system ATPase [Roseibium sp. TrichSKD4]
 gi|307769774|gb|EFO29000.1| LAO/AO transport system ATPase [Roseibium sp. TrichSKD4]
          Length = 333

 Score = 39.5 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 14/146 (9%)

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             A+ +++          I ++L+    P       + H + + GV GVGK+T I  L  
Sbjct: 25  ALARAITLVESRKAEHRQIARVLIQDLLPLT----GKAHRVGITGVPGVGKSTTIDTLGS 80

Query: 134 KMSDAGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAY 183
            ++ +G KV + A D  + R+          + QL +  +        +      AA   
Sbjct: 81  NLTASGHKVAVLAVDPSSTRTGGSILGDKTRMAQLAVDKNAFIRPSPSAGTLGGVAAKTR 140

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNS 209
           E+    +A   DV++++T G   + +
Sbjct: 141 ESMLLCEAAGFDVILVETVGIGQSET 166


>gi|237725469|ref|ZP_04555950.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436156|gb|EEO46233.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 274

 Score = 39.5 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 19/94 (20%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT+    +  +   G++V++   D   S              AD            
Sbjct: 16  GVGKTTLCVTFANYLVTKGIRVVVIDCDFQHS--------IMKCRKADIRKYGEQEMPYE 67

Query: 181 L-AYEAFKQA----------QAKKVDVLIIDTAG 203
           + AYEA  +A             ++DV+++D+ G
Sbjct: 68  VWAYEANNKAMMTSLMEKLHNDPEIDVVLMDSPG 101


>gi|195333535|ref|XP_002033446.1| GM20404 [Drosophila sechellia]
 gi|194125416|gb|EDW47459.1| GM20404 [Drosophila sechellia]
          Length = 5137

 Score = 39.5 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 62   VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            V++KI++ +   +   D+   R +  ++ +  K L    +P           +L+VG  G
Sbjct: 1378 VSRKILDAIRNFKLRDDIVWTRNMTRMAVVTAKAL-EFDEP-----------VLLVGPTG 1425

Query: 122  VGKTTVIGKLSK----KMSDAGLKVMLAAGDT 149
             GKTTV   L+     ++      +     D 
Sbjct: 1426 CGKTTVCQLLASIADVQLRILNCHMHTEGADF 1457


>gi|151554056|gb|AAI47890.1| PFKFB2 protein [Bos taurus]
          Length = 471

 Score = 39.5 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 36  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRRQAVKSYKSY------ 89

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 90  DFFRHDNEEAMKIRKQCALVALKDVKA 116


>gi|189219923|ref|YP_001940563.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4]
 gi|310943095|sp|B3DY14|FTSH2_METI4 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|189186781|gb|ACD83966.1| ATP-dependent Zn protease FtsH [Methylacidiphilum infernorum V4]
          Length = 641

 Score = 39.5 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 24/180 (13%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            TK   KDV+      +  + + + L    K F       P  +L+VG  G GKT     
Sbjct: 147 KTKVTFKDVAGVEEAKEEVQELVEFLKD-PKKFQKLGGRIPKGVLMVGPPGTGKT----L 201

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K ++        +   +                  +       S    +  +A + A 
Sbjct: 202 LAKAIAGEADVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQARRHAP 246

Query: 191 AKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +  ID  GR     +          +  +L  +D       + V+ AT  ++ L 
Sbjct: 247 CIVF-IDEIDAVGRARGTGLGGGHDEREQTLNALLVEMDGIESQEGVIVIAATNRKDVLD 305


>gi|149915133|ref|ZP_01903661.1| urease accessory protein UreG [Roseobacter sp. AzwK-3b]
 gi|149810854|gb|EDM70693.1| urease accessory protein UreG [Roseobacter sp. AzwK-3b]
          Length = 214

 Score = 39.5 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 76/207 (36%), Gaps = 37/207 (17%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLK 159
           + P  I + G  G GKTT+  +L++ +      + +   D +         R   +   +
Sbjct: 5   NGPLRIGIGGPVGAGKTTLTARLAETLKTR-FSIAVITNDIYTQEDAEALMRMQILPADR 63

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +    T      +     +  LA  A  QA+   +D+++I++ G       L A      
Sbjct: 64  VLGVETGGCPHTAIREDASINLAAVAEMQARHADLDIILIESGG-----DNLSATFS--- 115

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI--- 276
                  P      + V+D   G++  R  +   A+  +  LI+ K+D     G  +   
Sbjct: 116 -------PELADLTIYVIDVAAGEDIPR--KGGPALTRSDILIINKIDLAPHVGASLDAM 166

Query: 277 ---PIVVTHKIPVYFLGV---GEGIND 297
               + +    P +F+     G G++D
Sbjct: 167 QRDAMAMRGGRP-FFMTSLRKGTGVDD 192


>gi|90020756|ref|YP_526583.1| ATP-dependent helicase HrpA [Saccharophagus degradans 2-40]
 gi|89950356|gb|ABD80371.1| ATP-dependent helicase HrpA [Saccharophagus degradans 2-40]
          Length = 1296

 Score = 39.5 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 85/256 (33%), Gaps = 49/256 (19%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD 78
           K   S   K+   I       +L + + +++E    ++   V  A+K    +    + + 
Sbjct: 23  KKLTSLREKIIARIKREQPVDKLVEQLAKDIEQA--QA---VLAARK--AAVPAISFPEQ 75

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           + +     D++ELI                    V+++ G  G GKTT + K+  ++   
Sbjct: 76  LPISEKRADIAELIAN----------------NQVVILAGETGSGKTTQLPKICLEL-GR 118

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSAD----------FVCSEIGSDAAALAYEAFKQ 188
           G++ ++      R AA       A                F      S    L  +    
Sbjct: 119 GIRGLIGHTQPRRIAARTVADRIAQELQVPLGDAVGYQVRFTDHVTDSTLIKLMTDGILL 178

Query: 189 AQAK------KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           A+ +      K D LIID A     +  +   +G + ++L +     P   L V  AT  
Sbjct: 179 AEIQQDPLLLKYDTLIIDEA--HERSLNIDFLLGYLKQILAKR----PDLKLIVTSATI- 231

Query: 243 QNALRQVEMFHAVAGT 258
              L +       A  
Sbjct: 232 --DLDRFSKHFNNAPV 245


>gi|15838118|ref|NP_298806.1| general secretory pathway protein E [Xylella fastidiosa 9a5c]
 gi|9106551|gb|AAF84326.1|AE003981_8 general secretory pathway protein E [Xylella fastidiosa 9a5c]
          Length = 583

 Score = 39.5 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 21/105 (20%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL--IHKMLMPLSKPFNWDFSHRPHVILV 116
           G +V  ++++             + V++D  +L  I ++L   S+         PH IL+
Sbjct: 296 GESVVMRLLDR------------ETVVFDFQKLGFIDELLNRFSRVLEM-----PHGILL 338

Query: 117 V-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLK 159
           V G  G GKTT +  +  +++  G+K++       ++   I+Q++
Sbjct: 339 VTGPTGSGKTTTLYTVLNRLNTTGVKIITVEDPVEYQIEGINQIQ 383


>gi|251798960|ref|YP_003013691.1| capsular exopolysaccharide family [Paenibacillus sp. JDR-2]
 gi|247546586|gb|ACT03605.1| capsular exopolysaccharide family [Paenibacillus sp. JDR-2]
          Length = 232

 Score = 39.5 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 48/147 (32%), Gaps = 13/147 (8%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT I  L+   S  G +V+L   D  R                 F+ S        
Sbjct: 52  GDGKTTTIANLAVAFSQEGKRVLLVDADLRRPT-----------LHTVFMLSNQTGLTNV 100

Query: 181 LAY--EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           LA   E      +  VD L    +G    N   M G  KM ++++ L  H    +     
Sbjct: 101 LANQTEWQDAVHSTSVDNLFFIGSGPTPPNPSEMLGSKKMNQLIEELSAHYDMILFDAPP 160

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTK 265
           +    + L        V     + MTK
Sbjct: 161 SLVVTDGLVLASKCDGVVAVISVGMTK 187


>gi|7544879|gb|AAB34145.2| 6-phosphofructo-2-kinase [Bos taurus]
          Length = 476

 Score = 39.5 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R    D +K ++   
Sbjct: 43  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNLGEYR---RDGVKQYSSYN 99

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAK 192
                  E        A  A +  ++ 
Sbjct: 100 FFRPDNEEAMKVRKQCALAALRDVKSY 126


>gi|3023736|sp|Q28901|F263_BOVIN RecName: Full=6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           3; Short=6PF-2-K/Fru-2,6-P2ase 3; Short=PFK/FBPase 3;
           AltName: Full=6PF-2-K/Fru-2,6-P2ase brain/placenta-type
           isozyme; Includes: RecName:
           Full=6-phosphofructo-2-kinase; Includes: RecName:
           Full=Fructose-2,6-bisphosphatase
          Length = 463

 Score = 39.5 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R    D +K ++   
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNLGEYR---RDGVKQYSSYN 86

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAK 192
                  E        A  A +  ++ 
Sbjct: 87  FFRPDNEEAMKVRKQCALAALRDVKSY 113


>gi|150401444|ref|YP_001325210.1| hydrogenase accessory protein HypB [Methanococcus aeolicus
           Nankai-3]
 gi|150014147|gb|ABR56598.1| hydrogenase accessory protein HypB [Methanococcus aeolicus
           Nankai-3]
          Length = 220

 Score = 39.5 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 53/159 (33%), Gaps = 19/159 (11%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            +G  G GKT +I KL   + D    V   AGD       D+LK    +        +  
Sbjct: 38  FMGATGSGKTLLIEKLIDNLKDK-YNVACIAGDVIAKYDADRLKRHGVQV-IPLNTGKEC 95

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
              A L   AF     + +D+L I+  G L               +         H  + 
Sbjct: 96  HLDAHLVKHAFNDLDLENIDILFIENVGNL---------------ICPADFDLGTHKRIV 140

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
           V+  T G + + +       A  T  I+ K+D     G 
Sbjct: 141 VISVTEGDDTVEKHPEIFKTADLT--IINKIDIADAVGA 177


>gi|332879964|ref|ZP_08447648.1| deoxynucleoside kinase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332681960|gb|EGJ54873.1| deoxynucleoside kinase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 204

 Score = 39.5 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 9/67 (13%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG----DTFRSAAIDQLKIWADRTSADF 169
           I + G  G GKTT+   L+K          +       D +      Q++ W+      F
Sbjct: 3   IAIAGNIGAGKTTLTALLAKHYQWEAHFEDVVDNPYLDDFYH-----QMERWSFNLQIYF 57

Query: 170 VCSEIGS 176
           + S    
Sbjct: 58  LNSRFRQ 64


>gi|328885098|emb|CCA58337.1| putative periplasmic protein kinase ArgK and related GTPases of G3E
           family [Streptomyces venezuelae ATCC 10712]
          Length = 318

 Score = 39.5 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 70/216 (32%), Gaps = 32/216 (14%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++V +    R      +  ++   S  + +++  L+       +   +V+ + G  GVGK
Sbjct: 6   ELVAQAREGRPRAVARLISLVEGASPQLREVMAALA-----PLTGGAYVVGLTGSPGVGK 60

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIGSD 177
           +T    L      AG +V + A D        A+      +   A               
Sbjct: 61  STSTSALVSAYRRAGKRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMATRGH 120

Query: 178 AAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
              LA+   +A +   A   +V++++T G   +                 +   A  SV+
Sbjct: 121 LGGLAWSAPQAIRVLDAAGCEVILVETVGVGQSEVE--------------IASQADTSVV 166

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
            +       + ++  +      G    ++ K D   
Sbjct: 167 LLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 199


>gi|238478649|ref|NP_001154372.1| ATP binding / protein binding / transmembrane receptor [Arabidopsis
           thaliana]
 gi|332192669|gb|AEE30790.1| transmembrane receptors / ATP binding protein [Arabidopsis
           thaliana]
          Length = 1384

 Score = 39.5 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 7/180 (3%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           EL+ KR   ++S       V E I  +   L  L+   + + S    V+ + G+ G+GKT
Sbjct: 168 ELVVKRVLAELS--NTPEKVGEFIVGLESPLKDLTGLIDTESSSGVQVLGLYGMGGIGKT 225

Query: 126 TVIGKLSKKMSDAGLKVMLAAGD-TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T + K          +      D   RS+A + L         +        +  ++  E
Sbjct: 226 T-LAKAFYNKIVGNFEQRAFISDIRERSSAENGLVTLQKTLIKELFRLVPEIEDVSIGLE 284

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             K    +K  ++++D    +     L+       +    +       +L  L       
Sbjct: 285 KIKANVHEKKIIVVLDDVDHIDQVHALVGETRWYGQGTLIVITTRDSEILSKLSVNQQYE 344


>gi|218260369|ref|ZP_03475725.1| hypothetical protein PRABACTJOHN_01388 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224560|gb|EEC97210.1| hypothetical protein PRABACTJOHN_01388 [Parabacteroides johnsonii
           DSM 18315]
          Length = 862

 Score = 39.5 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E L  K   +D +VQ+++  +           ++    D +      + +G  GVGKT +
Sbjct: 548 ENLKKKVVGQDDAVQKIVKAIQR---------NRVGLKDPNKPIGTFMFLGPTGVGKTHL 598

Query: 128 IGKLSKKM 135
             KL++ +
Sbjct: 599 AKKLAEYL 606


>gi|154492131|ref|ZP_02031757.1| hypothetical protein PARMER_01762 [Parabacteroides merdae ATCC
           43184]
 gi|154087356|gb|EDN86401.1| hypothetical protein PARMER_01762 [Parabacteroides merdae ATCC
           43184]
          Length = 862

 Score = 39.5 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E L  K   +D +VQ+++  +           ++    D +      + +G  GVGKT +
Sbjct: 548 ENLKKKVVGQDDAVQKIVKAIQR---------NRVGLKDPNKPIGTFMFLGPTGVGKTHL 598

Query: 128 IGKLSKKM 135
             KL++ +
Sbjct: 599 AKKLAEYL 606


>gi|92116627|ref|YP_576356.1| cobyrinic acid a,c-diamide synthase [Nitrobacter hamburgensis X14]
 gi|91799521|gb|ABE61896.1| Cobyrinic acid a,c-diamide synthase [Nitrobacter hamburgensis X14]
          Length = 219

 Score = 39.5 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT+   ++  ++  G  V L   D  RSA+      WA+  + +F   E+  +  +
Sbjct: 19  GVGKTTIAVCVAAALARRGHDVALVDSDPQRSAS-----QWAEPGNLEFPVYEMALEQMS 73

Query: 181 LAYEAFKQAQAKKVDVLIIDTA 202
           ++  A +  +  +  V++IDTA
Sbjct: 74  VSAWA-QDVRGIQAGVVVIDTA 94


>gi|54310651|ref|YP_131671.1| putative ParA family protein [Photobacterium profundum SS9]
 gi|46915094|emb|CAG21869.1| Putative ParA family protein [Photobacterium profundum SS9]
          Length = 264

 Score = 39.5 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 46/140 (32%), Gaps = 26/140 (18%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  ++    KV++   D               + +A            A
Sbjct: 13  GVGKTTTCVNLAASLAATQRKVLVIDLD--------------PQGNATMASGVDKYQVDA 58

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
            AYE   + +    DV+I DT G  H    L+A  G +     +L       V       
Sbjct: 59  TAYELLVE-ETPFNDVVITDTTGGYH----LIAANGDVTAAEIKLMEVFAREVRL----- 108

Query: 241 TGQNALRQVEMFHAVAGTTG 260
             +NAL  V   +       
Sbjct: 109 --RNALEVVRDNYDFIFIDC 126


>gi|297850940|ref|XP_002893351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339193|gb|EFH69610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1385

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 56/185 (30%), Gaps = 8/185 (4%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
             I+E ++ +  A+  +    + +    +   +  L      + S    V+ + G+ G+G
Sbjct: 163 DDIIELVVKRVLAELSNTPEKVGEYIVGLESPMKDLMDLIVAESSSGVQVLGLYGMGGIG 222

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGD-TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           KTT + K          K      D   RS+A D L         +              
Sbjct: 223 KTT-LAKAFYNKIVGNFKQRAFISDIRERSSAEDGLVNLQKSLIKELFR---LVTEIEDV 278

Query: 183 YEAFKQAQAKKVD---VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
               ++ +    D   ++++D    +   + L+       +    +       +L  L  
Sbjct: 279 SRGLEKIKENVHDKKIIVVLDDVDHIDQVNALVGETRWYGQGTLIVITTRDSEILSKLSV 338

Query: 240 TTGQN 244
                
Sbjct: 339 NQQYE 343


>gi|147789618|emb|CAN60845.1| hypothetical protein VITISV_005977 [Vitis vinifera]
          Length = 271

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 13/103 (12%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            + I+++  T+   + +  +         I  +L+   +P          VI ++G+ GV
Sbjct: 56  VEDILDDFATEALGRKLMAETQASTNKAAILDLLLHDHEPSADAVR----VIPIIGMGGV 111

Query: 123 GKTTVIGKLSK------KMSDA--GLKVMLAAGDTFRSAAIDQ 157
           GKTT + +L+       ++     GL   L     ++ + + Q
Sbjct: 112 GKTT-LAQLAYNDDKAKRLEHQAAGLLSQLVIKGLYQPSELAQ 153


>gi|146342576|ref|YP_001207624.1| putative ABC transporter ATP-binding protein [Bradyrhizobium sp.
           ORS278]
 gi|146195382|emb|CAL79407.1| putative ABC transporter, ATP-binding protein with duplicated
           ATPase domains [Bradyrhizobium sp. ORS278]
          Length = 549

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 11/70 (15%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPF-------NWDFSHRPHVIL-V 116
           EELL K   K     +++  V+E + + +     LSK F       N  F   P  I+ V
Sbjct: 289 EELLKKASEKQTQTAQIIIPVAERLGQNVVDFEGLSKSFGDRLLIDNLTFKLPPGGIVGV 348

Query: 117 VGVNGVGKTT 126
           +G NG GKTT
Sbjct: 349 IGPNGAGKTT 358


>gi|90413745|ref|ZP_01221733.1| Putative ParA family protein [Photobacterium profundum 3TCK]
 gi|90325214|gb|EAS41711.1| Putative ParA family protein [Photobacterium profundum 3TCK]
          Length = 264

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 46/140 (32%), Gaps = 26/140 (18%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  ++    KV++   D               + +A            A
Sbjct: 13  GVGKTTTCVNLAASLAATQRKVLVIDLD--------------PQGNATMASGVDKYQVDA 58

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
            AYE   + +    DV+I DT G  H    L+A  G +     +L       V       
Sbjct: 59  TAYELLVE-ETPFNDVVITDTTGGYH----LIAANGDVTAAEIKLMEVFAREVRL----- 108

Query: 241 TGQNALRQVEMFHAVAGTTG 260
             +NAL  V   +       
Sbjct: 109 --RNALEVVRDNYDFIFIDC 126


>gi|18311890|ref|NP_558557.1| ABC transporter, ATP-binding protein [Pyrobaculum aerophilum str.
           IM2]
 gi|18159305|gb|AAL62739.1| ABC transporter, ATP-binding protein [Pyrobaculum aerophilum str.
           IM2]
          Length = 221

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-------GLKVML 144
           ++K L             +  V  VVG NG GKTT++  L+             G+   +
Sbjct: 19  VYKTLGSF--QLRAKGVFKEGVTCVVGPNGSGKTTLLKLLAAIYKPDSGYINYVGISSKV 76

Query: 145 AAGDTF 150
             GD +
Sbjct: 77  YVGDFY 82


>gi|327311378|ref|YP_004338275.1| reverse gyrase [Thermoproteus uzoniensis 768-20]
 gi|326947857|gb|AEA12963.1| reverse gyrase [Thermoproteus uzoniensis 768-20]
          Length = 1224

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 71/212 (33%), Gaps = 26/212 (12%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-------RPHVILV 116
           ++++E L  +   + ++    +    E I  +   +     W                 V
Sbjct: 46  RRVIENLRRRNALRGLAPLADVLRRYEEIANLFEKVVGFRMWGAQRLWARRLAAGKSFAV 105

Query: 117 VGVNGVGKTTVIGKL--SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-DFVCSE 173
           V   G GKTT +  L  +  M+  G  +++         A  +L  ++ R      + + 
Sbjct: 106 VAPTGSGKTTFL--LISALYMTSRGKALLVFPTSALAYQAYKKLLDYSSRAGLAPRIVTY 163

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                     EA K+ +A   D+L+I +A       +L            +    A   V
Sbjct: 164 NTMLKPQEREEALKRIEAGDFDILVITSAFLPKYFELL---------ARHKFAFVATDDV 214

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTK 265
             VL AT+       +E    + G T  ++ K
Sbjct: 215 DSVLRATSKN-----IERLLKLLGATDEVLGK 241


>gi|302559604|ref|ZP_07311946.1| daunorubicin resistance ATP-binding protein DrrA [Streptomyces
           griseoflavus Tu4000]
 gi|302477222|gb|EFL40315.1| daunorubicin resistance ATP-binding protein DrrA [Streptomyces
           griseoflavus Tu4000]
          Length = 339

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V  V+G NG GKTT +  L+  +   G +  +   D  R A
Sbjct: 36  TVYGVLGPNGAGKTTTVKMLATLLRPDGGEAHVFGHDIVREA 77


>gi|227822843|ref|YP_002826815.1| general secretion pathway protein E, GspE [Sinorhizobium fredii
           NGR234]
 gi|227341844|gb|ACP26062.1| general secretion pathway protein E, GspE [Sinorhizobium fredii
           NGR234]
          Length = 545

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 17/146 (11%)

Query: 106 DFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKIWA- 162
           D +  P+ +L+V G  G GKTT +  L K ++  G+K+        ++   + QL++ A 
Sbjct: 308 DIARSPNGVLIVTGPTGSGKTTTLYSLVKDLNKEGVKIFTIEDPVEYQMEGVTQLQVNAA 367

Query: 163 --------------DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                                V      + A +A +A          +   D AG +   
Sbjct: 368 VDLDFARALRSVLRQDPDIILVGEIRDRETAQIAIQAALTGHLVLTTLHTNDAAGAVTRL 427

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVL 234
             +      +   L+ +       VL
Sbjct: 428 RDMGIEGYLISATLRGVIAQRLVRVL 453


>gi|288550396|ref|ZP_05970272.2| type VI secretion ATPase, ClpV1 family [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315049|gb|EFC53987.1| type VI secretion ATPase, ClpV1 family [Enterobacter cancerogenus
           ATCC 35316]
          Length = 900

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 91/279 (32%), Gaps = 61/279 (21%)

Query: 3   NQKVASESLSWIR-KLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
            Q   +E +S+++ +L +        L+E ++ I              E  L+++++  +
Sbjct: 521 PQMPEAEKISYLQSRLNE--------LEETLSKIRG------------EKALVQTEVNAS 560

Query: 62  VAQKIVE-------------------ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           +   IV                    EL  +   K +     L  +S+ I      L+ P
Sbjct: 561 IVAAIVADWTGIPVGQVLKDDVSAVMELPQRLAEKVIGQTYALTCLSQSIQTARAGLADP 620

Query: 103 FNWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                  +P  V ++VG +GVGKT T +  ++ ++      ++      ++ A       
Sbjct: 621 ------QKPFGVFMLVGPSGVGKTETALA-IADQLYGGKQNLITINMSEYQEA------- 666

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
               T +    S  G           +  + K   V+++D   + H++   +        
Sbjct: 667 ---HTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVILLDEVEKAHSDVHELFFQVFDKG 723

Query: 221 VLKRLDPHAPHSVLQV--LDATTGQNALRQVEMFHAVAG 257
            ++  +         V  L +  G + +           
Sbjct: 724 SMEDGEGRQIDFRNTVILLTSNAGSDIISSACADPQTMP 762


>gi|226322520|ref|ZP_03798038.1| hypothetical protein COPCOM_00292 [Coprococcus comes ATCC 27758]
 gi|225209014|gb|EEG91368.1| hypothetical protein COPCOM_00292 [Coprococcus comes ATCC 27758]
          Length = 311

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 16/165 (9%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+ G  G GKTT I K +K + D G+ + +   D     A++   +       D    E+
Sbjct: 6   LITGFLGSGKTTFIKKYAKYLLDKGMNIGILENDF---GAVNVDMLLLQDLMGDNCELEM 62

Query: 175 GSDAAALAYEA------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            S                        D +I++ +G    +        + +     +   
Sbjct: 63  ISGGCDKETHRRRFRTKLIAMGMCGYDRVIVEPSGIYDVDEFFDVLHDEPLDKWYEIG-- 120

Query: 229 APHSVLQVLDATTGQNALRQVEM--FHAVAGTTGLIMTKMDGTAR 271
              +V+ ++DA        + +       A    +I+++ +   +
Sbjct: 121 ---NVITIVDAKLEPELSEEADYLLASEAANAGSIILSRAEEATK 162


>gi|118472207|ref|YP_889126.1| LAO/AO transporter ATPase [Mycobacterium smegmatis str. MC2 155]
 gi|118173494|gb|ABK74390.1| LAO/AO transport system ATPase [Mycobacterium smegmatis str. MC2
           155]
          Length = 294

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 41/194 (21%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA-------------GDTFRSAAIDQ 157
           P VI V G  G GK+T +G +     + GL+V + A             GD  R AA   
Sbjct: 47  PRVIGVTGPPGAGKSTTVGAMVGAYRERGLRVAVLAVDPSSPYSGGALLGDRIRMAA--- 103

Query: 158 LKIWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
                +                 LA     A +   A   D+++++T G   +       
Sbjct: 104 ---HINDPDVLIRSMAARGHLGGLAAAVPAAIRLLAALSYDLIVLETVGVGQSE------ 154

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH-AVAGTTGLIMTKMDGTARGG 273
               I +    DP        V+      +A++  +     VA    +++ K D      
Sbjct: 155 ----IEIAAIADPT------VVILNPGAGDAVQAAKAGVLEVADL--VVVNKADRDGADQ 202

Query: 274 GLIPIVVTHKIPVY 287
            +  +     +PV 
Sbjct: 203 TVRDLRAETDVPVL 216


>gi|308808586|ref|XP_003081603.1| putative cell division protein FtsH3 [Oryza sativa (ISS)
           [Ostreococcus tauri]
 gi|116060068|emb|CAL56127.1| putative cell division protein FtsH3 [Oryza sativa (ISS)
           [Ostreococcus tauri]
          Length = 749

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 59/180 (32%), Gaps = 18/180 (10%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +  E + +++  L +P  +    +  P  +++VG  G GKT     L++ ++      
Sbjct: 266 VDEAKEELQEIVDILKRPEKYARLGARPPSGVMLVGAPGTGKT----LLARAVAGEAGVP 321

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
            ++      ++   +L  +      +          + +  +        + D  +    
Sbjct: 322 FISIS----ASEFVELSRYGSARVREVFARAKAQSPSIVFIDEIDAVAKSRGDGKM---- 373

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
            R   N         + ++L  LD     S++  + AT   + L            T  +
Sbjct: 374 -RGMGND---EREQTLNQLLTELDGFETESMVICIAATNRADTLDAALRRPGRFDRTVSV 429


>gi|10121908|gb|AAG13418.1|AC000348_15 T7N9.23 [Arabidopsis thaliana]
          Length = 1560

 Score = 39.5 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 7/180 (3%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           EL+ KR   ++S       V E I  +   L  L+   + + S    V+ + G+ G+GKT
Sbjct: 315 ELVVKRVLAELS--NTPEKVGEFIVGLESPLKDLTGLIDTESSSGVQVLGLYGMGGIGKT 372

Query: 126 TVIGKLSKKMSDAGLKVMLAAGD-TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T + K          +      D   RS+A + L         +        +  ++  E
Sbjct: 373 T-LAKAFYNKIVGNFEQRAFISDIRERSSAENGLVTLQKTLIKELFRLVPEIEDVSIGLE 431

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             K    +K  ++++D    +     L+       +    +       +L  L       
Sbjct: 432 KIKANVHEKKIIVVLDDVDHIDQVHALVGETRWYGQGTLIVITTRDSEILSKLSVNQQYE 491


>gi|309774884|ref|ZP_07669904.1| ABC transporter, permease/ATP-binding protein [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917344|gb|EFP63064.1| ABC transporter, permease/ATP-binding protein [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 599

 Score = 39.5 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM-------LMPLSKPFNWDFSHRP 111
             A  ++++E L  +    ++S  + +  V   +            PL K  N +     
Sbjct: 321 AFAAIERVLEILNEEEEVAELSPAKQIEHVKGNVSFSHVRFGYGEEPLMKDLNVEVKSG- 379

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            ++ +VG  G GKTT+I  L +     G  + +   D
Sbjct: 380 QMVAIVGPTGAGKTTLINLLLRFYDVNGGSICIDGVD 416


>gi|262066406|ref|ZP_06026018.1| ATP-binding protein, Mrp/Nbp35 family [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379833|gb|EFE87351.1| ATP-binding protein, Mrp/Nbp35 family [Fusobacterium periodonticum
           ATCC 33693]
          Length = 257

 Score = 39.5 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 96  LMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++P   P   +  +  +VI ++ G  GVGK+TV   L+K++   G  V +   D
Sbjct: 1   MIPKDTPKVSEDKNIKNVIAVMSGKGGVGKSTVTTLLAKELRKKGYSVGVLDAD 54


>gi|258648384|ref|ZP_05735853.1| phosphoribulokinase family protein [Prevotella tannerae ATCC 51259]
 gi|260851554|gb|EEX71423.1| phosphoribulokinase family protein [Prevotella tannerae ATCC 51259]
          Length = 531

 Score = 39.5 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            VIL+ G +  GKTT   +L+ ++S  G + M  + D +
Sbjct: 267 KVILISGPSSSGKTTFCKRLAVQLSACGKRPMTISLDDY 305


>gi|242240755|ref|YP_002988936.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech703]
 gi|242132812|gb|ACS87114.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech703]
          Length = 654

 Score = 39.5 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  IL+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|161076562|ref|NP_001097279.1| CG13185, isoform C [Drosophila melanogaster]
 gi|157400293|gb|ABV53770.1| CG13185, isoform C [Drosophila melanogaster]
          Length = 5547

 Score = 39.5 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 62   VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            V++KI++ +   +   D+   R +  ++ +  K L    +P           +L+VG  G
Sbjct: 1415 VSRKILDAIRNFKLRDDIVWTRNMTRMAVVTAKAL-EFDEP-----------VLLVGPTG 1462

Query: 122  VGKTTVIGKLSK----KMSDAGLKVMLAAGDT 149
             GKTTV   L+     ++      +     D 
Sbjct: 1463 CGKTTVCQLLASIADVQLRILNCHMHTEGADF 1494


>gi|144274|gb|AAA23053.1| unknown [Caulobacter crescentus CB15]
          Length = 326

 Score = 39.5 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 10/115 (8%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAA-------- 154
              + R   I + GV G GK+T I +   K+ +AG +V + A D    R           
Sbjct: 48  MPLTGRAQRIGITGVPGAGKSTTIERFGCKLVEAGHRVAVLAVDPSSGRHGGSILGDKTR 107

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           ++QL + A+               A    EA    +A   DV+II+T G   + +
Sbjct: 108 MEQLSVQANAFIRPSPSGGALGGVARKTREAMLLCEAAGFDVVIIETVGVGQSET 162


>gi|292618882|ref|XP_001919792.2| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           2-like [Danio rerio]
          Length = 538

 Score = 39.5 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P VI+++G+   GKT +  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 37  TNSPTVIVMIGLPARGKTYMSKKLTRYLNWIGVPTKVFNLGVYRREAVKAYKSY------ 90

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    Q  K+
Sbjct: 91  DFFRHDNEEAMKIRKQCALVALQDVKI 117


>gi|238582941|ref|XP_002390087.1| hypothetical protein MPER_10696 [Moniliophthora perniciosa FA553]
 gi|215453087|gb|EEB91017.1| hypothetical protein MPER_10696 [Moniliophthora perniciosa FA553]
          Length = 100

 Score = 39.5 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 15/96 (15%)

Query: 21  FASTSLKLKEGITDIISSRRLD----DGVREELEDLLIRSDIGVAVAQKIVEELLTKR-- 74
            A    KL   ++ +  +  +D    D   +E+   L+ SD+ V +   +  ++  K   
Sbjct: 3   LADLGRKLNAALSSLNRAPVIDEKVLDATLKEITAALLESDVNVKLVASLRPQVKAKVKS 62

Query: 75  --------YAKDVSVQRVL-YDVSELIHKMLMPLSK 101
                    AKDV+ + ++   V + +  ++ P  +
Sbjct: 63  SLEGSSTDKAKDVNRKNLIQRAVFDELVSLVDPGRR 98


>gi|168060948|ref|XP_001782454.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666064|gb|EDQ52729.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1297

 Score = 39.5 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 80/255 (31%), Gaps = 49/255 (19%)

Query: 16  KLTKGFASTSLKL----KEGITDIISSRRLDDGVREELEDLLIRSD---IGVAVAQKIVE 68
           +  +    +  +        + +I+   + ++          I +D   +G        E
Sbjct: 517 REKQSANKSRQRFWELAGSKLGNILGVEKTEEE---------IDADKDAVGGEGEVDFKE 567

Query: 69  ELL----TKRYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVG 123
                   K   +  S       + E   + L   S +           V++VVG  G G
Sbjct: 568 NAKFGSHMKEKGEAASDFSKSKSIIEQ-RQYLPIFSVRDELLQVIRENQVVVVVGETGSG 626

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTSADF-------VCSEI 174
           KTT   ++++ + + G       G T   R AA+   K  ++    +        +  E 
Sbjct: 627 KTT---QMTQYLHEDGQTTFGMIGCTQPRRVAAMSVAKRVSEEMECELGDKVGYAIRFED 683

Query: 175 GSDAAALA---------YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
            +    +           E  + A   +  V+I+D A     N+        +  +LK++
Sbjct: 684 VTGPNTIIKYMTDGVLLRETLRDADLNQYRVVIMDEAHERSLNTD------VLFGILKQV 737

Query: 226 DPHAPHSVLQVLDAT 240
                   L V  AT
Sbjct: 738 VARRRDFKLIVTSAT 752


>gi|145349198|ref|XP_001419027.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579257|gb|ABO97320.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 468

 Score = 39.5 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 14/167 (8%)

Query: 112 HVILVVGVN-GVGKTT-VIGK-LSKKMSDAGLKVMLAAGDTFRSAAIDQ-LKIWADRTSA 167
            V++V G + GVGKTT      L+       ++      D     A    L+  +     
Sbjct: 2   KVVVVAGTHSGVGKTTIATALMLAYARRGLRVRAFKVGCDFVDPMAHRSALRSQSGDARE 61

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                     A A+A    K A+    DV I+D    L++    M+  G   ++ K L+ 
Sbjct: 62  SENLDGYMMSAGAVARVVAKHAET--CDVAIVDGVMGLYDGRDGMSEDGSTAQMAKWLEA 119

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFH----AVAGTTGLIMTKMDGTA 270
                VL V+D      ++  V   +    A     G++  K  G A
Sbjct: 120 G----VLLVVDCNAMARSVAAVIKGYREFDAELNLVGVVFNKTGGEA 162


>gi|85057395|ref|YP_456311.1| UvrD helicase [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789500|gb|ABC65232.1| UvrD helicase [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 761

 Score = 39.5 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV-IGKLSK 133
              ++   ++  + +  + K+  PL++      +       +    G GKTT    K++ 
Sbjct: 2   INNEIKGIKMFSNKNNFLEKLNKPLNQTQLAAVTSNAKSFYLAAGAGTGKTTTLTAKIAY 61

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            +    L        TF + A+ Q+K   D+ 
Sbjct: 62  LIEQKKLPSNQILALTFTNKAVKQMKEKLDQM 93


>gi|332375729|gb|AEE63005.1| unknown [Dendroctonus ponderosae]
          Length = 721

 Score = 39.5 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 23/183 (12%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           + + +  + +  ++  L  P  +       P  +L+VG  G GKT     L++ ++    
Sbjct: 289 KGVDEAKQELKDVVEFLRNPDKFSNLGGKLPKGVLLVGPPGTGKT----LLARAVAGE-- 342

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
               A    F +A  +  ++            +       L   A ++A      +  ID
Sbjct: 343 ----AGVPFFHAAGPEFDEVL---------VGQGARRVRDLFKAAKERAPCVVF-IDEID 388

Query: 201 TAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           + G    NS+L       + ++L  +D    +  + VL AT  +  L Q  +        
Sbjct: 389 SIGSKRTNSVLHPYANQTINQLLTEMDGFHQNEGVIVLGATNRKEDLDQALLRPGRFDVE 448

Query: 260 GLI 262
             +
Sbjct: 449 VTV 451



 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 27/175 (15%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            + +KL +G   T  +    I       + D  ++ ELE           +  ++   L 
Sbjct: 121 GFYQKLVQGLL-TENRFTFNIQ--TRGFKTDRSIQAELER-------NPTIMSRLKNNLA 170

Query: 72  TK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL----VVGVNGVGK 124
                     V +  V     E + K+L             R  +      +VG  G GK
Sbjct: 171 GGSSSELGGKVPLGNVSATDGEQLKKILSSEESNLTEHEKQRIKIAFAEGYLVGNTGGGK 230

Query: 125 TTVIGK----------LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           T    K          ++   +     +  A+G  FR    +Q+++  +     F
Sbjct: 231 TAKASKYFRMVQQVLTIAIFFAIVVSLMASASGSVFRIQLGNQVEVDPEEIHVTF 285


>gi|13541605|ref|NP_111293.1| GTPase [Thermoplasma volcanium GSS1]
 gi|14325004|dbj|BAB59930.1| guanylate kinase [Thermoplasma volcanium GSS1]
          Length = 315

 Score = 39.5 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 89/232 (38%), Gaps = 47/232 (20%)

Query: 66  IVEELLT---KRYAKDVSVQRVLYDVS-ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +VE +     +  A+ +S+     D S ELI ++         + ++ + H+I + G  G
Sbjct: 6   LVEYIRKGEPRAIARAISLVEEDNDYSYELIREI---------YPYTGKAHIIGITGPPG 56

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGK+T+IG LSK +S+ G KV + A D    +      +  +R     + S+ G    ++
Sbjct: 57  VGKSTMIGILSKMLSEHGKKVSILAVDAS--SPFSGGTLLGNRIRMQEILSKYGIYMRSV 114

Query: 182 AYEA------------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           A                K   A   D +II+T G   ++                +D   
Sbjct: 115 ANRGFTGGLSRSTWNIVKVLDASGSDYIIIETVGAGQSD----------------IDIVY 158

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
               + V  A    ++++ ++      G    ++ KMD   R G    +   
Sbjct: 159 LADTVIVTLAPGLGDSIQAIKSGMMEIG-DIFVINKMD---REGSFFALKDI 206


>gi|156395187|ref|XP_001636993.1| predicted protein [Nematostella vectensis]
 gi|156224101|gb|EDO44930.1| predicted protein [Nematostella vectensis]
          Length = 373

 Score = 39.5 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +P  ILV+G+ G GKTT + +L+  +        +   D
Sbjct: 17  KPTCILVLGMAGSGKTTFVQRLTAHLHAGKKAPYVVNLD 55


>gi|163849750|ref|YP_001637793.1| arginine/ornithine transport system ATPase [Methylobacterium
           extorquens PA1]
 gi|163661355|gb|ABY28722.1| LAO/AO transport system ATPase [Methylobacterium extorquens PA1]
          Length = 346

 Score = 39.5 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           + L + L+  D   A+A+ I   L   R A           V +LI  +L    +     
Sbjct: 26  DTLRERLLAGD-RAALARAIT--LAESRRA------DHRAAVRDLIDAVLPQTGRAIRVG 76

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAI-----DQLK 159
            +         GV GVGK+T I  L   ++ AG KV + A D  + R+         ++ 
Sbjct: 77  IT---------GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA 127

Query: 160 IWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             A   +A    S        +A    E     +A   DV++++T G   + + 
Sbjct: 128 RLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA 181


>gi|320335382|ref|YP_004172093.1| 2-phosphoglycerate kinase [Deinococcus maricopensis DSM 21211]
 gi|319756671|gb|ADV68428.1| 2-phosphoglycerate kinase [Deinococcus maricopensis DSM 21211]
          Length = 485

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 12/111 (10%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDV-SELIHKMLMP-----LS 100
           L   L+ + +    A+K+      +    +  +  +  + DV  EL+ + + P       
Sbjct: 192 LTQSLLAAGVAPDYARKVARAAQARLRGTEDRLVTRAHVSDVTEELLRQEIGPQVADRYR 251

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                    +P  IL+ GV+G GK+ +  +L+ ++        + + D+ R
Sbjct: 252 LLRVVRRPPKPLAILLGGVSGTGKSFLAAELAYRL----GITRIISTDSVR 298


>gi|319948149|ref|ZP_08022311.1| ATP-dependent RNA helicase protein [Dietzia cinnamea P4]
 gi|319438178|gb|EFV93136.1| ATP-dependent RNA helicase protein [Dietzia cinnamea P4]
          Length = 1304

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 34/192 (17%)

Query: 63  AQKIVEELLTKRYA---KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
             +  E +  +  A    +   Q  +    + I + +                V+++ G 
Sbjct: 52  VDEAAERVRRRAEAIPAPEYPEQLPVSARKDEIAEAIRE------------NQVVVIAGE 99

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
            G GKTT I K+  ++   G++ M+      R AA    +  AD    +           
Sbjct: 100 TGSGKTTQIPKICLEL-GRGVRGMIGHTQPRRLAARSVAERIADELGVEIGGP------- 151

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLDPHAPHSVLQVL 237
                A +            DT+ +L  + +L+A I   +++R    +     H     +
Sbjct: 152 --VGSAVRFDDRTG-----PDTSVKLMTDGVLLAEIRRDRLLRAYDTIIIDEAHERSLNI 204

Query: 238 DATTGQNALRQV 249
           D   G   L+Q+
Sbjct: 205 DFLLGY--LKQI 214


>gi|308235826|ref|ZP_07666563.1| ATP-dependent helicase HrpA [Gardnerella vaginalis ATCC 14018]
 gi|311114408|ref|YP_003985629.1| ATP-dependent helicase HrpA [Gardnerella vaginalis ATCC 14019]
 gi|310945902|gb|ADP38606.1| ATP-dependent helicase HrpA [Gardnerella vaginalis ATCC 14019]
          Length = 1355

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
            VI+V G  G GKTT I K++ ++   G    +      R AA    +  A     
Sbjct: 26  QVIIVSGQTGSGKTTQIPKMALELGRGGRGKQIVHTQPRRLAARTVAERIASEMGV 81


>gi|325965510|ref|YP_004243414.1| plasmid segregation oscillating ATPase ParF [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323471597|gb|ADX75280.1| plasmid segregation oscillating ATPase ParF [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 210

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 114 ILVVGV--NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I+VVG    GVGK+TV+  L+ +++  G+++ +  GD  RS A                 
Sbjct: 2   IIVVGSEKGGVGKSTVVTNLAVELAKRGMRIAVVDGDRQRSTARWAGDREEAGHEPRIFV 61

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            E          E          DV+++D AG+    
Sbjct: 62  VEKLGSLHETLRE-----LDTSYDVVLVDVAGKDSKE 93


>gi|260888319|ref|ZP_05899582.1| LAO/AO transport system ATPase [Selenomonas sputigena ATCC 35185]
 gi|330838356|ref|YP_004412936.1| LAO/AO transport system ATPase [Selenomonas sputigena ATCC 35185]
 gi|260861855|gb|EEX76355.1| LAO/AO transport system ATPase [Selenomonas sputigena ATCC 35185]
 gi|329746120|gb|AEB99476.1| LAO/AO transport system ATPase [Selenomonas sputigena ATCC 35185]
          Length = 312

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 15/155 (9%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
             I +ELL       +++ R +  +     +  + + K   +  +   +V+ + G  G G
Sbjct: 1   MDIAKELLQ---GNRLALSRAITAIENE-AENAIDIMKAL-YPHTGHAYVLGITGPPGAG 55

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSEIGS 176
           K+T+  KL+ +    G  V + A D    F   AI      +   A              
Sbjct: 56  KSTLTDKLANEYRKQGKTVGVIAIDPTSPFSGGAILGDRIRMASLAMDEGVFIRSMGTRG 115

Query: 177 DAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNN 208
               L++   +A K   A   D++ ++T G   + 
Sbjct: 116 SLGGLSHKTADAVKAMDAFGKDIIFVETVGVGQSE 150


>gi|302552762|ref|ZP_07305104.1| nodulation ABC transporter NodI [Streptomyces viridochromogenes DSM
           40736]
 gi|302470380|gb|EFL33473.1| nodulation ABC transporter NodI [Streptomyces viridochromogenes DSM
           40736]
          Length = 344

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V  V+G NG GKTT +  L+  +   G +  +   D  R A
Sbjct: 36  TVYGVLGPNGAGKTTTVKMLATLLRPDGGEAHVFGHDIVREA 77


>gi|223039327|ref|ZP_03609616.1| cytochrome c oxidase, heme b and copper-binding subunit,
           membrane-bound [Campylobacter rectus RM3267]
 gi|222879388|gb|EEF14480.1| cytochrome c oxidase, heme b and copper-binding subunit,
           membrane-bound [Campylobacter rectus RM3267]
          Length = 366

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 79/250 (31%), Gaps = 38/250 (15%)

Query: 50  EDLLIRSDIGVAVAQ---KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E +LI     V +      +  EL T       S + V+  +   I +         N  
Sbjct: 36  EKILIE----VEIVSSNPDVANELRTDIKRVMGSNECVINIIQPKIPEEKSNTQSGKNIA 91

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              +  V++  G  GVGK+T    L+  M+  G KV +   D +       L     +  
Sbjct: 92  PQIKNFVMVSSGKGGVGKSTTTLNLAISMAKLGKKVGILDADIYGPNIPRMLGEVGTQPQ 151

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRL 225
                  IG+    +     +             + G L      L+     +++ +++L
Sbjct: 152 V------IGNKLKPILTHGVEMM-----------SMGVLMEEGMSLIWRGSMIMKAIEQL 194

Query: 226 DPHAPHSVLQV----LDATTGQNALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIP 277
                 S L V    +   TG   L   +     AG    + T     +D + R    + 
Sbjct: 195 LKDVFWSELDVLFLDMPPGTGDAQLTLAQSVPVTAGV--CVTTPQVVALDDSKR---ALD 249

Query: 278 IVVTHKIPVY 287
           +     IP+ 
Sbjct: 250 MFEKLHIPIA 259


>gi|194863240|ref|XP_001970345.1| GG23424 [Drosophila erecta]
 gi|190662212|gb|EDV59404.1| GG23424 [Drosophila erecta]
          Length = 336

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 14/159 (8%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL--LTKRYAKDVSVQRVLY 86
           K  I  +I     D+    EL  + I+S       +++ +EL  L K    +VS      
Sbjct: 26  KNNIGSLIDFYDADEKKLHELWAINIQS------VRELKKELSLLPKGSDGEVSPDLNYG 79

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
              E + K+L  + +PF         +  + G  GVGKT ++  L+        + +L  
Sbjct: 80  TGIEELDKLLDSVEQPFKPGR-----IWELCGQPGVGKTQLLYTLAFNFVWKHTQPVLFI 134

Query: 147 GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
            DT R  +  +++        D    E       +   A
Sbjct: 135 -DTKREFSCKRIQDMLRAREGDVEAREAVMRGIQVVQAA 172


>gi|158316927|ref|YP_001509435.1| adenylylsulfate kinase [Frankia sp. EAN1pec]
 gi|158112332|gb|ABW14529.1| adenylylsulfate kinase [Frankia sp. EAN1pec]
          Length = 606

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
               R   IL  G++G GK+T+ G L  ++ + G +V L  GD  R+
Sbjct: 421 PRRQRGLTILFTGLSGSGKSTLAGLLVCRLLERGRRVTLLDGDIVRT 467


>gi|148977807|ref|ZP_01814363.1| adenylylsulfate kinase [Vibrionales bacterium SWAT-3]
 gi|145963021|gb|EDK28291.1| adenylylsulfate kinase [Vibrionales bacterium SWAT-3]
          Length = 206

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 99  LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           + K F  D  S +P V+   G++G GK+TV G L  +++  G    L  GD  R  
Sbjct: 19  IDKGFRADLKSQKPAVLWFTGLSGSGKSTVAGALENRLAQLGYHTYLLDGDNVRHG 74


>gi|119485208|ref|ZP_01619593.1| hypothetical protein L8106_07159 [Lyngbya sp. PCC 8106]
 gi|119457436|gb|EAW38561.1| hypothetical protein L8106_07159 [Lyngbya sp. PCC 8106]
          Length = 344

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 59  GVAVAQKIVEELLTKR------YAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHR 110
              +  + VE LL KR        +       +    EL+ K+ +PL+      +   +R
Sbjct: 35  AFGITTENVETLLEKRSQLFCSLLQHNCNLPQVKTGLELLWKLWLPLATQLTQHYQSLNR 94

Query: 111 PHVILVVGVNGVGKTTVIGK-LSKKMSDAGLKVMLAAGD 148
           P +  V+G  G GKTT +GK L+  ++  G K +  + D
Sbjct: 95  PIIQGVLGGQGTGKTT-LGKALTTILTFQGYKTLSLSID 132


>gi|31789452|gb|AAP58566.1| putative periplasmic protein kinase [uncultured Acidobacteria
           bacterium]
          Length = 319

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 40/219 (18%)

Query: 66  IVEELLT---KRYAKDVSVQRVL-YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
           +VE +     +  A+ +S    L  D SEL+ ++         +  + R  +I + G  G
Sbjct: 10  LVERISKGEPRAVARAISKVEDLSKDASELMKQI---------FPLTGRGLIIGITGAPG 60

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEI 174
            GK++++ KL+      G +V + A D        AI      +++              
Sbjct: 61  AGKSSLVDKLALLYRQQGERVGIVAVDPSSPFSGGAILGDRIRMQMLGLDEGVFIRSMAT 120

Query: 175 GSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
             +   LA    +A     A     +II+T G   +                 +   A  
Sbjct: 121 RGNLGGLARSTVDAVSILDAAGYSKIIIETVGVGQDEVE--------------VVKAADV 166

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           SV+ ++      + ++ ++      G    ++ K D   
Sbjct: 167 SVVVLVPGM--GDDIQAIKAGIMEIG-DVFVINKADRDG 202


>gi|83593625|ref|YP_427377.1| bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate
           kinase protein [Rhodospirillum rubrum ATCC 11170]
 gi|83576539|gb|ABC23090.1| sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 641

 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 10/139 (7%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +++ L        + ++  L+  + L+ + +   +         +P VI + G++G GK+
Sbjct: 416 LIDRLTNATVGAGM-IRFSLWRSTNLVWQHIEVGAAQRAAQKGQKPCVIWLTGLSGSGKS 474

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T+   L K++        +  GD  R                 F   +   +   +A  A
Sbjct: 475 TIANLLDKRLYAEAHHTTMLDGDNVR---------HGLNRDLGFTEQDRVENIRRVAEVA 525

Query: 186 FKQAQAKKVDVLIIDTAGR 204
              A A  + ++   +  R
Sbjct: 526 KLMADAGLITLVSFISPYR 544


>gi|329767153|ref|ZP_08258681.1| hypothetical protein HMPREF0428_00378 [Gemella haemolysans M341]
 gi|328837878|gb|EGF87503.1| hypothetical protein HMPREF0428_00378 [Gemella haemolysans M341]
          Length = 331

 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 78  DVSVQRVLYDVSELIHKM---LMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSK 133
           +++   V+      +  +   +      F ++ S R +  IL  G  G GK+T + KL+ 
Sbjct: 102 ELNEGCVVRIFINELEDVDYSIFEEDNEFIYNLSKRAYGLILFSGPTGSGKSTSMYKLAS 161

Query: 134 KMSDAGLKVMLAA 146
           +++    +++   
Sbjct: 162 ELASRDKQIITVE 174


>gi|297844582|ref|XP_002890172.1| hypothetical protein ARALYDRAFT_889048 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336014|gb|EFH66431.1| hypothetical protein ARALYDRAFT_889048 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 766

 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 50/240 (20%)

Query: 86  YDVSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
             + EL   +L P+   +PF       P  IL  G  G GKT    KL+  +++      
Sbjct: 201 KVLDELERNVLFPILNPEPFRKIGVKPPSGILFHGPPGCGKT----KLANAIANE----- 251

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI---ID 200
                 ++ +A D             V S +   +     E F +A      ++    ID
Sbjct: 252 -VGVPFYKISATD-------------VVSGVSGASEENIRELFSKAYRTAPSIVFIDEID 297

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLD------PHAPHSVLQVLDATTGQNALRQVEMFHA 254
             G    N         + ++L  +D      P +    + V+ AT   +AL        
Sbjct: 298 AIGSKRENQQREMEKRIVTQLLTCMDGPVNKGPESSAGFVLVIGATNRPDALDPALRRSG 357

Query: 255 VAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLE-PFVAKDFSAVITGC 313
                 + ++  D  AR   ++ +V             + +  LE PF  K  + +  G 
Sbjct: 358 RFECE-IALSVPDEDART-EILSVVA------------QKLR-LEGPFDKKRIARLTPGF 402


>gi|239930122|ref|ZP_04687075.1| ABC-transporter ATP-binding component [Streptomyces ghanaensis ATCC
           14672]
 gi|291438462|ref|ZP_06577852.1| ABC-transporter ATP-binding component [Streptomyces ghanaensis ATCC
           14672]
 gi|291341357|gb|EFE68313.1| ABC-transporter ATP-binding component [Streptomyces ghanaensis ATCC
           14672]
          Length = 340

 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V  V+G NG GKTT +  L+  +   G +  +   D  R A
Sbjct: 36  TVYGVLGPNGAGKTTTVKMLATLLRPDGGEAHVFGHDIVREA 77


>gi|160894359|ref|ZP_02075136.1| hypothetical protein CLOL250_01912 [Clostridium sp. L2-50]
 gi|156864060|gb|EDO57491.1| hypothetical protein CLOL250_01912 [Clostridium sp. L2-50]
          Length = 314

 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 11/102 (10%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID------QLKIWADRTSAD 168
           L+ G  G GKTT I K +K + D GL + +   D     A++      Q  I  D  + +
Sbjct: 6   LITGFLGSGKTTFIRKYAKYLIDQGLNIGILENDF---GAVNVDAMLLQ-DILGDNCTLE 61

Query: 169 FVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            V                         D ++++ +G    + 
Sbjct: 62  MVAGGCDADCHRRRFKTKLIAMGMCGYDRVLVEPSGIFDMDE 103


>gi|147766062|emb|CAN67973.1| hypothetical protein VITISV_008686 [Vitis vinifera]
          Length = 1227

 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 76/207 (36%), Gaps = 43/207 (20%)

Query: 5   KVASESL--------SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRS 56
           ++A+E+L        SW   LT      S  LK  + D+ S       + + LED L ++
Sbjct: 88  EIATEALRRKMEAADSWTG-LTDALNRFSTCLKAPLADVQSVESRVKEIIDNLED-LAQA 145

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL------IHKMLMPLSKPFNWDFSHR 110
                     ++ L  K   K +  +     + ++        ++   + K    D + R
Sbjct: 146 ----------IDALGLKGDGKKLPPRVPSTSLVDVEFPAYGRDEIKEDMVKRLLSDNTSR 195

Query: 111 PH--VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
               VI +VG+ G GKTT    L++ + + G           R     QLK W   ++  
Sbjct: 196 NKIDVISIVGMGGAGKTT----LAQLLYNDG-----------RVEGHFQLKAWVCVSNEF 240

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVD 195
            +     S    +       ++++ +D
Sbjct: 241 CLPKVTKSILGKIGSATSSDSRSEDLD 267


>gi|329121997|ref|ZP_08250607.1| arsenite-transporting ATPase [Dialister micraerophilus DSM 19965]
 gi|327467178|gb|EGF12686.1| arsenite-transporting ATPase [Dialister micraerophilus DSM 19965]
          Length = 576

 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 19/180 (10%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++ +        ++ Q+V       +   L  L    N    +   VI  +G  GVGKTT
Sbjct: 286 IDSIRNLLKKDQINEQKV------EVKGKLFNLDDVVNDLVRNNRKVIFTMGKGGVGKTT 339

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD-RTSADFVCSEIGSDAAALAYEA 185
           +   ++ K+S  G KV LA  D       D +K   D  +       +   +      E 
Sbjct: 340 IASSVALKLSKLGKKVHLATTD-----PADHIKYMIDSSSGISMSHIDEKEELKKYQDEV 394

Query: 186 FKQAQAKK--VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            + A+      DV  I+   R             + R    L   A   ++ +  A TG 
Sbjct: 395 LENARKTMSEDDVAYIEEDLRSP-----CTQEIAVFRAFAELVEKADDEIVVIDTAPTGH 449


>gi|329114651|ref|ZP_08243410.1| DNA mismatch repair protein MutS [Acetobacter pomorum DM001]
 gi|326696131|gb|EGE47813.1| DNA mismatch repair protein MutS [Acetobacter pomorum DM001]
          Length = 946

 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTT----VIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P   D + +  V+L+ G N  GK+T        L+  ++  G        D  R   +D
Sbjct: 681 TPNTCDLAPQQRVMLLTGPNMAGKSTYLRQTA--LAVILAQGGFP---VPADRVRIGVVD 735

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           QL  ++   ++D +     +    +   A    QA    ++++D  GR
Sbjct: 736 QL--FSRVGASDDLARGRSTFMVEMTETAAILNQAGPRSLVVVDEIGR 781


>gi|238059531|ref|ZP_04604240.1| daunorubicin resistance ABC transporter ATPase subunit
           [Micromonospora sp. ATCC 39149]
 gi|237881342|gb|EEP70170.1| daunorubicin resistance ABC transporter ATPase subunit
           [Micromonospora sp. ATCC 39149]
          Length = 273

 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR--SAAIDQLKIWADRTSAD 168
           + G NG GK+T +G L+ ++   G + ++   D  R  +AA  QL +     + D
Sbjct: 34  LFGPNGAGKSTTVGILTTRLRATGGRALVGGVDVGRDPAAARAQLAVVPQHNNLD 88


>gi|15789863|ref|NP_279687.1| hypothetical protein VNG0674C [Halobacterium sp. NRC-1]
 gi|169235584|ref|YP_001688784.1| argK-type transport ATPase [Halobacterium salinarum R1]
 gi|10580261|gb|AAG19167.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726650|emb|CAP13436.1| argK-type transport ATPase [Halobacterium salinarum R1]
          Length = 324

 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 78/216 (36%), Gaps = 32/216 (14%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            +V +LL  ++         + D ++    ++  L     +  + +  VI + G  G GK
Sbjct: 7   DLVADLLAGKHRALARAITKIEDRNDGYRDIVSAL-----YPHTGQADVIGITGSPGSGK 61

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAI--DQLKIWADRTSADFV-----CSEI 174
           +T++ KL+ +  + GL V + A D        A+  D++++ +  T  D           
Sbjct: 62  STLVDKLASQYRERGLTVGVIAVDPSSPFTGGAVLGDRIRMASTATDMDVFFRSMSARGS 121

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
               +    +A K   A   D +II+T G   N                 +D       +
Sbjct: 122 LGGLSTATADAVKALDAFGKDKVIIETVGAGQNE----------------VDIVKTADTV 165

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
            VL   +  + ++ ++      G    ++ K D   
Sbjct: 166 AVLVPPSSGDDVQMLKAGILEIG-DVFVVNKADLDG 200


>gi|258514751|ref|YP_003190973.1| hypothetical protein Dtox_1486 [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778456|gb|ACV62350.1| hypothetical protein Dtox_1486 [Desulfotomaculum acetoxidans DSM
           771]
          Length = 270

 Score = 39.1 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++P   +      V+ V G +G GKTTV  +L+K ++D    V L   D
Sbjct: 15  AEPVPEEPVQDVQVLAVWGSSGSGKTTVSVRLAKYLADQKKNVALLLCD 63


>gi|256546019|ref|ZP_05473373.1| arsenical pump-driving ATPase [Anaerococcus vaginalis ATCC 51170]
 gi|256398313|gb|EEU11936.1| arsenical pump-driving ATPase [Anaerococcus vaginalis ATCC 51170]
          Length = 580

 Score = 39.1 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 14/78 (17%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K + K++ + + L D+ + ++K              +   VI  +G  GVGKTTV   
Sbjct: 299 TEKTFDKEIKIDKKLKDIIDDLYK--------------NNKKVIFTMGKGGVGKTTVAAA 344

Query: 131 LSKKMSDAGLKVMLAAGD 148
           ++  +S  G KV L   D
Sbjct: 345 IALGLSKKGKKVHLTTTD 362


>gi|295399948|ref|ZP_06809928.1| ABC transporter related protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312110804|ref|YP_003989120.1| ABC transporter transmembrane protein [Geobacillus sp. Y4.1MC1]
 gi|294977727|gb|EFG53325.1| ABC transporter related protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311215905|gb|ADP74509.1| ABC transporter transmembrane region [Geobacillus sp. Y4.1MC1]
          Length = 598

 Score = 39.1 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 22/219 (10%)

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE---LIHKMLMPLSKPFNWDF 107
           + L+ +  G     +I++    +R          ++   E   ++       +   +  F
Sbjct: 318 NTLLSALAGAERVLEILDMEKEERDETGAISLERIHGKVEFDHVVFSYDKQQNAIRDVSF 377

Query: 108 SHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQ 157
           S  P   + +VG  G GKTT++  L++        + +   D+            A + Q
Sbjct: 378 SVSPGETVALVGPTGAGKTTILQLLARFYDPDHGHIFIDGHDSRSIKRASLRAHMAFVLQ 437

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK--------KVDVLII-DTAGRLHNN 208
                + T  D +       +      A K A A           D ++  D  G     
Sbjct: 438 DTFLFEGTIRDNIRYGKLDASDEEVERAAKWANAHSFIMKLPNGYDTVLKQDGGGISQGQ 497

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             L+A    MI     L      S +  +     Q AL 
Sbjct: 498 RQLLAIARAMIANPSILILDEATSNIDTVTEMKIQEALE 536


>gi|255719392|ref|XP_002555976.1| KLTH0H02222p [Lachancea thermotolerans]
 gi|238941942|emb|CAR30114.1| KLTH0H02222p [Lachancea thermotolerans]
          Length = 181

 Score = 39.1 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           M    SK F+  F H+   IL+VG++G GKTTV+ KL  
Sbjct: 1   MGTSFSKLFSSLFGHKEMRILMVGLDGAGKTTVLYKLKL 39


>gi|195046886|ref|XP_001992230.1| GH24638 [Drosophila grimshawi]
 gi|193893071|gb|EDV91937.1| GH24638 [Drosophila grimshawi]
          Length = 745

 Score = 39.1 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 20/144 (13%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIIS---SRRLDDGVREELE----DLL 53
           + N+++AS + ++     +G    +      +  +I       +D    E+L+    D L
Sbjct: 424 VDNKEIASLTKNFSGAELEGLVRAAQ--SSAMNRLIKADAKVTVDPEAMEKLKVNRDDFL 481

Query: 54  --IRSDI--GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
             + +DI      AQ+I++ +L +      SV      V+ L+   ++ + +    + S 
Sbjct: 482 HSLENDIKPAFGTAQEILDNMLAR------SVINWGQPVTNLLEDGMLYVQQAKAPESSG 535

Query: 110 RPHVILVVGVNGVGKTTVIGKLSK 133
              V L+ G    GKT +  KL+K
Sbjct: 536 VVSV-LIAGAPNSGKTALAAKLAK 558


>gi|8250500|emb|CAB93628.1| FtsY protein [Mycoplasma hominis]
 gi|8250502|emb|CAB93629.1| FtsY protein [Mycoplasma hominis]
 gi|8250504|emb|CAB93630.1| FtsY protein [Mycoplasma hominis]
 gi|8250506|emb|CAB93631.1| FtsY protein [Mycoplasma hominis]
 gi|8250524|emb|CAB93633.1| FtsY protein [Mycoplasma hominis]
 gi|8250526|emb|CAB93634.1| FtsY protein [Mycoplasma hominis]
 gi|8250528|emb|CAB93635.1| FtsY protein [Mycoplasma hominis]
 gi|8250530|emb|CAB93636.1| FtsY protein [Mycoplasma hominis]
 gi|8250532|emb|CAB93637.1| FtsY protein [Mycoplasma hominis]
 gi|8250534|emb|CAB93638.1| FtsY protein [Mycoplasma hominis]
 gi|14330770|emb|CAC40852.1| FtsY protein [Mycoplasma hominis]
 gi|14330772|emb|CAC40853.1| FtsY protein [Mycoplasma hominis]
 gi|14330774|emb|CAC40854.1| FtsY protein [Mycoplasma hominis]
 gi|14330776|emb|CAC40855.1| FtsY protein [Mycoplasma hominis]
 gi|14330780|emb|CAC40857.1| FtsY protein [Mycoplasma hominis]
 gi|14330782|emb|CAC40858.1| FtsY protein [Mycoplasma hominis]
 gi|14330784|emb|CAC40859.1| FtsY protein [Mycoplasma hominis]
          Length = 117

 Score = 39.1 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 19 KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           G + ++    E I ++ +   ++D+   E+LE++LI SDI + + Q I+ E   +   +
Sbjct: 19 AGLSKSNSSFNEHIKELQNKHNKIDEEFFEDLEEMLIMSDISIKLVQIIINECKKEVRNE 78

Query: 78 DVSVQRVLYDVSELIHKML 96
          +++  +++   +E+I   L
Sbjct: 79 NITDPKLI---NEIIADKL 94


>gi|312135321|ref|YP_004002659.1| ABC transporter-like protein [Caldicellulosiruptor owensensis OL]
 gi|311775372|gb|ADQ04859.1| ABC transporter related protein [Caldicellulosiruptor owensensis
           OL]
          Length = 597

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 9/99 (9%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH--------KMLMPLSKPFNWDFSH 109
           + +A  ++I E L T+   +D      L  +   I             P+ K  ++    
Sbjct: 322 VAMASTERIFEILDTQPDIQDSPYAYNLPPIRGEIKFENVYFSYDEEKPVLKNVSFTIKA 381

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
               I +VG  G GKTT+I  +++       ++++   D
Sbjct: 382 GET-IALVGETGAGKTTIINLIARFYEPQNGRILIDGHD 419


>gi|239980954|ref|ZP_04703478.1| ATP-dependent helicase [Streptomyces albus J1074]
          Length = 1329

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 69/184 (37%), Gaps = 18/184 (9%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVG 123
           ++EE+  +       +      V E+ +   +P+S  K    +      V++V G  G G
Sbjct: 26  VLEEIRAEAEKGAARMAERRARVPEIRYPEQLPVSQKKELIAEAIRDHQVVVVAGETGSG 85

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT I K+  ++   G++ M+      R AA         RT A+ +  E+ +       
Sbjct: 86  KTTQIPKICLEL-GRGVRGMIGHTQPRRIAA---------RTVAERIADELDTPLGEAVG 135

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLDPHAPHSVLQVLDATT 241
              +     + D   I    +L  + IL+A I   + +R    +     H     +D   
Sbjct: 136 WKVRFTDQVRQDATFI----KLMTDGILLAEIQTDRELRAYDTIIIDEAHERSLNIDFLL 191

Query: 242 GQNA 245
           G  A
Sbjct: 192 GYLA 195


>gi|255280282|ref|ZP_05344837.1| ABC transporter, permease/ATP-binding protein [Bryantella
           formatexigens DSM 14469]
 gi|255269373|gb|EET62578.1| ABC transporter, permease/ATP-binding protein [Bryantella
           formatexigens DSM 14469]
          Length = 593

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 28/167 (16%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS---------H 109
            ++ A++I + L T      +     L  V   +    +  + P   D            
Sbjct: 319 NISAAERIFDILDTPAEITSLPGSTALPPVKGEVRFEHVSFAYPDEPDKPVLENISFTVQ 378

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT---- 165
               I +VG  G GKTT++  +S+       ++ +   DT R   ++ L+          
Sbjct: 379 PGETIALVGPTGAGKTTIVSLISRFYDVTDGRICIDGFDT-RHVTLESLRRQMGVMTQDT 437

Query: 166 ---------SADFVCSEIGSDAAALAYEAFKQAQ-----AKKVDVLI 198
                    +  +  S+   +   +A +A              D +I
Sbjct: 438 FLFTGTVRENICYGKSDATEEEMIIAAKAVNAHDFIMKMEHGYDTVI 484


>gi|154486461|ref|ZP_02027868.1| hypothetical protein BIFADO_00275 [Bifidobacterium adolescentis
           L2-32]
 gi|154084324|gb|EDN83369.1| hypothetical protein BIFADO_00275 [Bifidobacterium adolescentis
           L2-32]
          Length = 609

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 24/167 (14%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSAAIDQLKIWADRT----- 165
           I +VG  G GKTT++  L +    +G  + +   DT    R    DQ  +    T     
Sbjct: 399 IAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRG 458

Query: 166 ----SADFVCSEIGSDAAALAYEAFKQAQA-----KKVDVLIIDTAGRLHNNSILMAGIG 216
               +  +  S +  +    A +A              D ++ D        + L  G  
Sbjct: 459 TVRENIAYSKSGVTDEQIVAACKAVGLHHYIMSLPDGYDTVLDD-------KTSLSQGQK 511

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           +++ + + +   AP  +L    ++        ++             
Sbjct: 512 QLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSF 558


>gi|119469303|ref|ZP_01612242.1| putative ATPase of the MinD/MRP superfamily protein
           [Alteromonadales bacterium TW-7]
 gi|119447167|gb|EAW28436.1| putative ATPase of the MinD/MRP superfamily protein
           [Alteromonadales bacterium TW-7]
          Length = 358

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAG 139
           V++ + DV  +   +   +       F    H++L+  G  GVGK+T    L+  +   G
Sbjct: 67  VEQHVRDVLNIEISIKAKVDIQEPAKFKGIKHIVLIASGKGGVGKSTTAVNLAGALKAEG 126

Query: 140 LKVMLAAGDTF 150
            KV +   D +
Sbjct: 127 AKVGILDADIY 137


>gi|146297384|ref|YP_001181155.1| putative adenylate/guanylate cyclase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410960|gb|ABP67964.1| putative adenylate/guanylate cyclase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 1153

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           LSK FN   S   + +L++G NGVGKT+++ KL+  +    +K      
Sbjct: 260 LSKLFNIIASKDTNSVLLLGPNGVGKTSLLEKLTNHLVANNIKTYYIRC 308


>gi|291452817|ref|ZP_06592207.1| ATP-dependent helicase [Streptomyces albus J1074]
 gi|291355766|gb|EFE82668.1| ATP-dependent helicase [Streptomyces albus J1074]
          Length = 1344

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 69/184 (37%), Gaps = 18/184 (9%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVG 123
           ++EE+  +       +      V E+ +   +P+S  K    +      V++V G  G G
Sbjct: 41  VLEEIRAEAEKGAARMAERRARVPEIRYPEQLPVSQKKELIAEAIRDHQVVVVAGETGSG 100

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KTT I K+  ++   G++ M+      R AA         RT A+ +  E+ +       
Sbjct: 101 KTTQIPKICLEL-GRGVRGMIGHTQPRRIAA---------RTVAERIADELDTPLGEAVG 150

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLDPHAPHSVLQVLDATT 241
              +     + D   I    +L  + IL+A I   + +R    +     H     +D   
Sbjct: 151 WKVRFTDQVRQDATFI----KLMTDGILLAEIQTDRELRAYDTIIIDEAHERSLNIDFLL 206

Query: 242 GQNA 245
           G  A
Sbjct: 207 GYLA 210


>gi|262273121|ref|ZP_06050938.1| chromosome (plasmid) partitioning protein ParA/sporulation
           initiation inhibitor protein soj [Grimontia hollisae CIP
           101886]
 gi|262222877|gb|EEY74185.1| chromosome (plasmid) partitioning protein ParA/sporulation
           initiation inhibitor protein soj [Grimontia hollisae CIP
           101886]
          Length = 264

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 26/140 (18%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  ++    KV++   D               + +A         D  A
Sbjct: 13  GVGKTTTCINLAASLAATQRKVLVIDLD--------------PQGNATMASGVDKYDVHA 58

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
            AY+   + +    DV++ DT G  H    L+A  G +     +L       V       
Sbjct: 59  TAYDLLVE-ETPFNDVVVTDTTGGYH----LIAANGDVTAAEIKLMEVFAREVRL----- 108

Query: 241 TGQNALRQVEMFHAVAGTTG 260
             +NAL  V   +       
Sbjct: 109 --RNALADVRENYDFIFIDC 126


>gi|260779464|ref|ZP_05888354.1| adenylylsulfate kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604273|gb|EEX30577.1| adenylylsulfate kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 205

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 99  LSKPFNWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           + K F  +   +  V+L   G++G GK+TV G L  K+++ G    L  GD  R  
Sbjct: 19  IDKAFRAELKQQKPVVLWFTGLSGAGKSTVAGALENKLAEQGYHTYLLDGDNVRHG 74


>gi|325981092|ref|YP_004293494.1| arsenite-activated ATPase ArsA [Nitrosomonas sp. AL212]
 gi|325530611|gb|ADZ25332.1| arsenite-activated ATPase ArsA [Nitrosomonas sp. AL212]
          Length = 590

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            LS+  +        +I+++G  GVGKTT+   ++  ++  GL V L   D    AA   
Sbjct: 316 GLSRLIDDIAKDGSGLIMLMGKGGVGKTTLAAAIAVNLAHRGLPVHLTTSD---PAAHLN 372

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
             I     +      +   +         +   A       +D  G+      L +   +
Sbjct: 373 ETISGTMDNLQVDRIDPHVETERYRQRILQTKGAH------LDAKGKALLEEDLRSPCTE 426

Query: 218 MIRVLKR 224
            I V + 
Sbjct: 427 EIAVFQA 433


>gi|195581812|ref|XP_002080724.1| GD10641 [Drosophila simulans]
 gi|194192733|gb|EDX06309.1| GD10641 [Drosophila simulans]
          Length = 336

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 58/170 (34%), Gaps = 13/170 (7%)

Query: 22  ASTSLKLKEGITDIISSRRLDD--GVREELEDLLIR--SDIGVAVAQKIVEEL--LTKRY 75
            ST   L E   +++S   +       +  E  L    + I +   +++ +EL  L K  
Sbjct: 10  TSTGKLLSEYQLNLLSKNNICSLIDFYDADEKKLHELWA-INIQSVRELKKELSLLPKGS 68

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             + +         E + K+L  + +PF         V  + G  GVGKT ++  L+   
Sbjct: 69  VDEGTPDLNYETGIEELDKLLHSVEQPFKPGR-----VWELCGQPGVGKTQLLYTLALNF 123

Query: 136 SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
                   +   DT R  +  +++        D    E       +   A
Sbjct: 124 VWK-HSQAVLFIDTKREFSCKRIQDMLRARKVDAEACERAMKEIRVVQAA 172


>gi|183233848|ref|XP_649168.2| helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169801379|gb|EAL43782.2| helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 953

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 16/127 (12%)

Query: 54  IRSDIG-VAVAQKIVEEL-------LTKRY---AKDVSVQRVLYDVSELIHKMLMPLSKP 102
           + +DI  +   ++++EE+         ++     ++ + +     + E   ++ +   + 
Sbjct: 241 LEADIKEIKSIEEVIEEIGVIAPKDKERKEWEQREEKATKEYKKSIEEKRKELPIYSMRN 300

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKI 160
              +   +  +I+++G  G GKTT   +L++ + + G       G T   R AAI   + 
Sbjct: 301 KLMESIKKNQIIILIGETGCGKTT---QLTQYLDEDGYSKNGRIGCTQPRRVAAISVSQR 357

Query: 161 WADRTSA 167
            A+    
Sbjct: 358 VAEEMKV 364


>gi|123968152|ref|YP_001009010.1| putative multidrug efflux ABC transporter [Prochlorococcus marinus
           str. AS9601]
 gi|123198262|gb|ABM69903.1| putative multidrug efflux ABC transporter [Prochlorococcus marinus
           str. AS9601]
          Length = 598

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           ++L +     + +  +    + +  R+++ + EE++     S      A+  +E    K 
Sbjct: 297 QRLFEPLRQLAERFTQIQGGLTAVERINELLDEEIQIKDSAS------AKHFLEN--AKN 348

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K    +    +V+   +     + K  ++  +   HV   VG  G GKTT+I  L + 
Sbjct: 349 VNKKFKGKIEFKNVN-FFYNEGEHIIKNLSFKINPGEHV-AFVGPTGSGKTTIIRLLCRL 406

Query: 135 MSDA 138
               
Sbjct: 407 YEPQ 410


>gi|159903105|ref|YP_001550449.1| putative multidrug efflux ABC transporter [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888281|gb|ABX08495.1| putative multidrug efflux ABC transporter [Prochlorococcus marinus
           str. MIT 9211]
          Length = 599

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           ++L +     + +  +    + +  R+ + + E++E +    D G      +V++   + 
Sbjct: 297 QRLFEPLRQLAERFTQIQGGLTAVERIGELLEEQVEIV----DYGARNVSPLVDDNSLEP 352

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            AK   V   +        +++  LS    +  +   HV  +VG  G GKTTVI  L + 
Sbjct: 353 LAKGEVVFDNVSFAYRSDEQIISDLS----FTIAQGEHV-ALVGPTGSGKTTVIRLLCRL 407

Query: 135 MSDAGLKVMLAAGD 148
                 ++++   D
Sbjct: 408 YEPQKGRILIDGID 421


>gi|119716032|ref|YP_922997.1| LAO/AO transport system ATPase [Nocardioides sp. JS614]
 gi|119536693|gb|ABL81310.1| LAO/AO transport system ATPase [Nocardioides sp. JS614]
          Length = 323

 Score = 39.1 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +VE            +  ++ D S L+ +++  L+       +    VI + G  GVGK+
Sbjct: 14  LVERARAGEARAVARLISLVEDESPLLREVMAALA-----PHTGHAQVIGITGSPGVGKS 68

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIGSDA 178
           T    L  ++  A  +V + A D        A+      ++  A                
Sbjct: 69  TSTSALVAELRRADKRVGVLAVDPSSPFSGGALLGDRVRMQDHALDRDVYIRSMASRGHL 128

Query: 179 AALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             LA+   +A +   A   DV++++T G   +   
Sbjct: 129 GGLAWSTPQALRVLDAAGCDVVLVETVGVGQSEVE 163


>gi|196016674|ref|XP_002118188.1| hypothetical protein TRIADDRAFT_33759 [Trichoplax adhaerens]
 gi|190579237|gb|EDV19337.1| hypothetical protein TRIADDRAFT_33759 [Trichoplax adhaerens]
          Length = 369

 Score = 39.1 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K+ +E     + +D+++        ++I  ML       +   S +  V+   G  G GK
Sbjct: 75  KLTKEWKQHVFGQDLAL--------KIIRNMLTSHLVRISKKTSKKALVLSFHGGVGTGK 126

Query: 125 TTVIGKLSKKMSDAGLKVMLAA 146
           T V   L+K +   GL      
Sbjct: 127 TLVAKLLAKVLYKNGLSSSYVR 148


>gi|8250412|emb|CAB93586.1| FtsY protein [Mycoplasma hominis]
 gi|8250522|emb|CAB93632.1| FtsY protein [Mycoplasma hominis]
          Length = 117

 Score = 39.1 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 19 KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           G + ++    E I ++ +   ++D+   E+LE++LI SDI + + Q I+ E   +   +
Sbjct: 19 AGLSKSNSSFNEHIKELQNKHNKIDEEFFEDLEEMLIMSDISIKLVQIIINECKKEVRNE 78

Query: 78 DVSVQRVLYDVSELIHKML 96
          +++  +++   +E+I   L
Sbjct: 79 NITDPKLI---NEIIADKL 94


>gi|330040602|ref|XP_003239968.1| ATP(GTP)-binding protein [Cryptomonas paramecium]
 gi|327206894|gb|AEA39070.1| ATP(GTP)-binding protein [Cryptomonas paramecium]
          Length = 343

 Score = 39.1 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            +M    S   ++    +P VI ++G+ G GKTT++ +LS  +S       +   D
Sbjct: 17  KRMNKSFSNDSDYKIFLKPLVIFLIGMAGSGKTTLVCRLSSDLSYLKKNHYIINID 72


>gi|312869472|ref|ZP_07729628.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           oris PB013-T2-3]
 gi|311094980|gb|EFQ53268.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           oris PB013-T2-3]
          Length = 738

 Score = 39.1 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 81/221 (36%), Gaps = 29/221 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQR--VLYDVSELIHKMLMPLSKP------------FNWDFSH 109
           QKIVEE  T     D+  Q    L D+ + +   ++  ++                + S 
Sbjct: 404 QKIVEE-KTNIPVGDLQQQEENQLRDLDKELEAHVIGQNEAVDKVARAIRRNRIGLNKSG 462

Query: 110 RPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           RP    L VG  GVGKT    +L+K++   G K  +   D          +     +++ 
Sbjct: 463 RPIGSFLFVGPTGVGKTETAKQLAKQL--FGSKDAMIRFDMS--------EYMDKTSTSK 512

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRL 225
            + +  G      A +  +Q +     ++++D   + H + +   L       +   +  
Sbjct: 513 LIGAAPGYVGYEEAGQLTEQVRRHPYSLILLDEVEKAHPDVMHMFLQILDDGRLTDSQGR 572

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
                 +++ +       +A+  V      AG+T  I+ K+
Sbjct: 573 TVSFKDTIIIMTSNAGTGDAVASVGFGAEAAGSTHSIIDKL 613


>gi|222630815|gb|EEE62947.1| hypothetical protein OsJ_17752 [Oryza sativa Japonica Group]
          Length = 1533

 Score = 39.1 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 29/146 (19%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG-----VAV--AQKIVEELLTK 73
                 KL +      + R++ +         LI+ DI      V     +  V+ ++ K
Sbjct: 271 LLRLRKKLGKLFKKSKARRKISN---------LIQ-DINKKFEQVKARHVKYTVDSVVLK 320

Query: 74  RYAK---DVSVQRVLYDVSELI------HKMLMPLSKPFNWDFSHRP-HVILVVGVNGVG 123
             A    D  +Q +    +EL+        ++  LS   + D S +   VI VVG  G+G
Sbjct: 321 SLAATTIDPRLQNLYKRATELVGIDGPRDDLINKLSLGGDVDVSDKKMKVISVVGFGGLG 380

Query: 124 KTTVIGKLSK-KMSDAGLKVMLAAGD 148
           KTT + K                  D
Sbjct: 381 KTT-LAKAVYDHFKPHFKCRASVPVD 405


>gi|295839081|ref|ZP_06826014.1| ABC transporter, ATP-binding protein [Streptomyces sp. SPB74]
 gi|197697702|gb|EDY44635.1| ABC transporter, ATP-binding protein [Streptomyces sp. SPB74]
          Length = 640

 Score = 39.1 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM----LMPLSKPFNWDFS 108
           LI+S  GVA A++I E L  +  + D +  +   ++   +            KP   D S
Sbjct: 358 LIQS--GVASAERIFELLDAEEQSADPADPQRPGELRGRVAFEHVSFRYEEDKPLIEDLS 415

Query: 109 HRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                 H + +VG  G GKTT++  L +     G ++ L   D  R
Sbjct: 416 LEVDPGHTVAIVGPTGAGKTTLVNLLLRFYDVTGGRITLDGVDIAR 461


>gi|163735603|ref|ZP_02143034.1| plasmid partitioning protein RepAf1 [Roseobacter litoralis Och 149]
 gi|161391031|gb|EDQ15369.1| plasmid partitioning protein RepAf1 [Roseobacter litoralis Och 149]
          Length = 405

 Score = 39.1 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 112 HVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           HVI VV    G GKTT    L++ ++  G +V+    D
Sbjct: 121 HVISVVNFKGGSGKTTTAAHLAQHLALKGHRVLAVDLD 158


>gi|92118152|ref|YP_577881.1| arginine/ornithine transport system ATPase [Nitrobacter
           hamburgensis X14]
 gi|91801046|gb|ABE63421.1| methylmalonyl-CoA mutase metallochaperone MeaB [Nitrobacter
           hamburgensis X14]
          Length = 326

 Score = 39.1 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 19/145 (13%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             EL+ ++L           +  P         GVGK+T I  L   + + G  + + A 
Sbjct: 40  ARELVQELLPATGAAIRVGITGSP---------GVGKSTTIDALGMYLIEHGHSIAVLAV 90

Query: 148 D--TFRSAAI-----DQLKIWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVL 197
           D  + RS         ++   +   +A    S        +A    EA    +A   DV+
Sbjct: 91  DPSSVRSGGSILGDKTRMARLSAAEAAYIRPSPAAGTLGGVAAKTREAMLLCEAAGFDVV 150

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVL 222
           +++T G   + + +       + ++
Sbjct: 151 LVETVGTGQSETAVCDMTDFFLALM 175


>gi|161076560|ref|NP_001097278.1| CG13185, isoform B [Drosophila melanogaster]
 gi|10727627|gb|AAF58611.2| CG13185, isoform B [Drosophila melanogaster]
          Length = 5303

 Score = 39.1 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 62   VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            V++KI++ +   +   D+   R +  ++ +  K L    +P           +L+VG  G
Sbjct: 1379 VSRKILDAIRNFKLRDDIVWTRNMTRMAVVTAKAL-EFDEP-----------VLLVGPTG 1426

Query: 122  VGKTTVIGKLSK----KMSDAGLKVMLAAGDT 149
             GKTTV   L+     ++      +     D 
Sbjct: 1427 CGKTTVCQLLASIADVQLRILNCHMHTEGADF 1458


>gi|317123390|ref|YP_004097502.1| cysteine ABC transporter permease/ATP-binding protein
           [Intrasporangium calvum DSM 43043]
 gi|315587478|gb|ADU46775.1| ABC transporter, CydDC cysteine exporter (CydDC-E) family,
           permease/ATP-binding protein CydC [Intrasporangium
           calvum DSM 43043]
          Length = 569

 Score = 39.1 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            P+  PF+ D S    V  VVG NG GK+T++  L++ +     +   AA    R
Sbjct: 360 GPVLGPFDLDLSPGETV-AVVGPNGSGKSTLLAVLARHLDPRAGRYETAADGRLR 413


>gi|300310715|ref|YP_003774807.1| ATP-dependent Zn metallopeptidase [Herbaspirillum seropedicae SmR1]
 gi|300073500|gb|ADJ62899.1| ATP-dependent Zn metallopeptidase (cell division FtsH)
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 629

 Score = 39.1 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 25/171 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                +V EL+  +  P    F       PH +L+VG  G GKT     L++ ++     
Sbjct: 163 DEAKEEVQELVEFLRDP--TKFQKLGGRIPHGVLMVGPPGTGKT----LLARAIAGEAKV 216

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +   A K A      +  ID 
Sbjct: 217 PFFTISGS---------------DFVEMFVGVGASRVRDMFENAKKHAPCIIF-IDEIDA 260

Query: 202 AGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            GR     +          + ++L  +D    +S + V+ AT   + L + 
Sbjct: 261 VGRHRGAGMGGGNDEREQTLNQMLVEMDGFEANSGVIVIAATNRADVLDKA 311


>gi|251777871|ref|ZP_04820791.1| putative arsenite-transporting ATPase ArsA [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082186|gb|EES48076.1| putative arsenite-transporting ATPase ArsA [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 581

 Score = 39.1 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 32/76 (42%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K     +      +D  +L    +  L+K     + +   VI  +G  GVGKTT+   ++
Sbjct: 288 KNVRALLKDNYTKFDNEDLKVMEIPSLNKIIEDLYVNNKKVIFTMGKGGVGKTTIAAAIA 347

Query: 133 KKMSDAGLKVMLAAGD 148
             +S  G KV L   D
Sbjct: 348 LGLSKKGKKVHLTTTD 363


>gi|227524737|ref|ZP_03954786.1| deoxyguanosine kinase [Lactobacillus hilgardii ATCC 8290]
 gi|227088091|gb|EEI23403.1| deoxyguanosine kinase [Lactobacillus hilgardii ATCC 8290]
          Length = 149

 Score = 39.1 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM 135
           VI+  G+ GVGKTT+ GK++  +
Sbjct: 2   VIITAGMIGVGKTTLTGKIAAHL 24


>gi|198460833|ref|XP_002138911.1| GA24138 [Drosophila pseudoobscura pseudoobscura]
 gi|198137150|gb|EDY69469.1| GA24138 [Drosophila pseudoobscura pseudoobscura]
          Length = 5732

 Score = 39.1 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 16/93 (17%)

Query: 61   AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
             V+++I++ +   +   D+   R +  ++ L  K L    +P           +L+VG  
Sbjct: 1383 PVSRRILQAIRNFKLRGDIVWTRNMTRMAVLTAKAL-EFDEP-----------VLLVGPT 1430

Query: 121  GVGKTTVIGKLSK----KMSDAGLKVMLAAGDT 149
            G GKTTV   L+     ++      +     D 
Sbjct: 1431 GCGKTTVCQLLASIADVQLRILNCHMHTEGADF 1463


>gi|16124419|ref|NP_418983.1| hypothetical protein CC_0164 [Caulobacter crescentus CB15]
 gi|221233102|ref|YP_002515538.1| chain length regulator/tyrosine-protein kinase [Caulobacter
           crescentus NA1000]
 gi|13421279|gb|AAK22151.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220962274|gb|ACL93630.1| chain length regulator/tyrosine-protein kinase (capsular
           polysaccharide biosynthesis) [Caulobacter crescentus
           NA1000]
          Length = 739

 Score = 39.1 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 70/202 (34%), Gaps = 21/202 (10%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG-VNGVGKTTVIGKLSKKMSDAGLK 141
           + L   +E + K+   +             VI V   + G GKTT    L++ ++ +G K
Sbjct: 517 KPLSSFAESLRKLRASI---LFSKVGETVQVIAVTSSLPGEGKTTTTFSLARTLATSGAK 573

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA-------FKQAQAKKV 194
           V++   D  R +AI Q            V + + +   A+  +          ++     
Sbjct: 574 VIVVDCDL-RQSAISQFLKEPAPVGLLEVLNGVATLDQAIINDESGAHILPLAKSSYTPR 632

Query: 195 DVLIIDTAGRLHNNSILMAGIGKM-------IRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           DVL      RL         I  +       I   + L PH    V+ V    T   A++
Sbjct: 633 DVLGSSAMHRLLGELRGRYEIVLLDTAPLLAIADTRILAPHTDAVVMLVRWKKTPVKAVQ 692

Query: 248 QVEMFHA--VAGTTGLIMTKMD 267
                     A   G+ +T+MD
Sbjct: 693 SALALLQGTRAFIAGVALTQMD 714


>gi|332880697|ref|ZP_08448370.1| hypothetical protein HMPREF9074_04147 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332681331|gb|EGJ54255.1| hypothetical protein HMPREF9074_04147 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 200

 Score = 39.1 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKK 134
             +P +I+V G NG GKTT+  K+   
Sbjct: 3   ERKPLLIVVAGPNGSGKTTITAKVLHH 29


>gi|262372791|ref|ZP_06066070.1| ATP-dependent helicase HrpA [Acinetobacter junii SH205]
 gi|262312816|gb|EEY93901.1| ATP-dependent helicase HrpA [Acinetobacter junii SH205]
          Length = 1284

 Score = 39.1 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 72/221 (32%), Gaps = 39/221 (17%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFS------------HRPHV 113
           +  L   +  +   ++++    ++ + + L  L K   N D               +  V
Sbjct: 19  LNRLRKDKKTETAELEKLFEQSNQKVKQRLARLPKIKLNQDLPVTQYADRLIEAIQKHQV 78

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------- 166
           I+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+          
Sbjct: 79  IIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGEKLGESI 137

Query: 167 ---ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSILMAGIGK 217
                F           L  +    A+          D +IID A     N   + G   
Sbjct: 138 GFKVRFNEQGSQDSIVRLMTDGILLAELTNDRFLSKYDTIIIDEAHERSLNIDFIMGY-- 195

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
               LK+L P  P   + V  AT     + +   +   A  
Sbjct: 196 ----LKQLLPKRPDLKVIVTSATL---DVNRFSQYFNNAPI 229


>gi|218696633|ref|YP_002404300.1| putative chaperone clpB [Escherichia coli 55989]
 gi|218353365|emb|CAU99384.1| putative chaperone clpB [Escherichia coli 55989]
          Length = 888

 Score = 39.1 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 76/210 (36%), Gaps = 40/210 (19%)

Query: 45  VREELEDLL-IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           +++E  +LL +  DIG             +   +DV++        E I + L       
Sbjct: 571 MKDEQTELLHLEKDIG------------RRVVGQDVAL--------ESIAQRLRAAKTGL 610

Query: 104 NWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFR-SAAIDQLKIW 161
               +    V L+VG +GVGKT T +  L+  M      ++      ++    + QLK  
Sbjct: 611 T-SGNGPQEVFLLVGPSGVGKTETALA-LADVMYGGEKSLITINLSEYQEPHTVSQLKGS 668

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS-ILMAG--IGKM 218
                       +G     +  EA    + +   V+++D   + H +   L         
Sbjct: 669 P--------PGYVGYGQGGILTEAV---RKRPYSVVLLDEVEKAHRDVLNLFYQVFDRGF 717

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           +R  +  +    ++V+  + +  G + L Q
Sbjct: 718 MRDGEGREIDFRNTVIL-MTSNLGSDLLMQ 746


>gi|187921916|ref|YP_001893505.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
 gi|187720354|gb|ACD21576.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
          Length = 209

 Score = 39.1 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 19/112 (16%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGK-------------LSKKM--SDAGLKVMLAAG 147
              + + RP + +V G NG GKTT+ GK             ++ ++  +  G +  +   
Sbjct: 1   MTAEHAQRPQLWIVAGPNGAGKTTLTGKHFAGRVPVVNPDDIANRINPNHQGSRATMLRA 60

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
              R A  +Q  + A      FV     +    L       A   KV++L +
Sbjct: 61  G--RIAIAEQQALLAK--GKSFVVETTLTGKRELKLMQHASALGYKVNLLFV 108


>gi|56551231|ref|YP_162070.1| ATPase MipZ [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241760893|ref|ZP_04758982.1| ATPase MipZ [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753137|ref|YP_003226030.1| ATPase MipZ [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|5932371|gb|AAD56924.1|AF180145_16 unknown [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542805|gb|AAV88959.1| ATPase MipZ [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374512|gb|EER63973.1| ATPase MipZ [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552500|gb|ACV75446.1| ATPase MipZ [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 261

 Score = 39.1 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAA------IDQLKIWADRTSADFVCSE 173
           G GK+T    ++  +S  GLKV     DT  R+ A      ++ +K            ++
Sbjct: 17  GSGKSTTAVHVAVALSAKGLKVAAVDLDTRQRTFARYMENRVESVKRIG--MDLPTPETK 74

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           +    +           ++  D +I+DT GR  ++
Sbjct: 75  VFDPDSGDDLNLLLDELSQNYDFVIVDTPGRHSSD 109


>gi|313901690|ref|ZP_07835121.1| LAO/AO transport system ATPase [Thermaerobacter subterraneus DSM
           13965]
 gi|313468041|gb|EFR63524.1| LAO/AO transport system ATPase [Thermaerobacter subterraneus DSM
           13965]
          Length = 338

 Score = 39.1 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 23/177 (12%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKI- 160
           +  + R HV+ + G  GVGK+T+   L++ + D G +V L A D        A+   +I 
Sbjct: 44  YPHTGRAHVVGLTGAPGVGKSTLAAALARHLRDTGQRVGLVAVDPSSPFTGGALLGDRIR 103

Query: 161 --WADRTSADFVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---- 210
                     F  S          +    +      A  +D ++++T G   +       
Sbjct: 104 FSHGPVDDGVFFRSLASRGQVGGLSRATGDVIHLLDAAGMDTVLVETVGAGQSEVEIMRY 163

Query: 211 -------LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
                  L  G+G  ++  K     A    + V++      A R V+    +     
Sbjct: 164 AHTVVVVLAPGLGDDVQAAKAGILEAGD--ILVVNKADQPGASRTVQELRQMLDLGA 218


>gi|325675306|ref|ZP_08154991.1| arsenite-transporting ATPase [Rhodococcus equi ATCC 33707]
 gi|325554012|gb|EGD23689.1| arsenite-transporting ATPase [Rhodococcus equi ATCC 33707]
          Length = 379

 Score = 39.1 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
             +  +++  G  GVGKTT    ++ + ++ G +V +   D  R  A
Sbjct: 18  DPKTRIVVCCGAGGVGKTTTAASMALRAAEQGRRVAVLTIDPARRLA 64


>gi|254788147|ref|YP_003075576.1| sulfate adenylyltransferase, large subunit [Teredinibacter turnerae
           T7901]
 gi|237687397|gb|ACR14661.1| sulfate adenylyltransferase, large subunit [Teredinibacter turnerae
           T7901]
          Length = 632

 Score = 39.1 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           F  +P +I   G++G GK+T    L K++   G    L  GD  R  
Sbjct: 455 FKQKPAIIWFTGLSGSGKSTTANALEKQLFAMGYSTYLLDGDNVRHG 501


>gi|326681346|ref|XP_003201796.1| PREDICTED: hypothetical protein LOC100534786, partial [Danio rerio]
          Length = 793

 Score = 39.1 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 30/191 (15%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           D + +  +IL+VG  G GKTT+I  L   +     +  +              +I  +  
Sbjct: 41  DNAKQNKIILMVGKTGSGKTTLINTLINHLLGVKFEDEI------------WYEITEENK 88

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN--SILMAGIGKMIRVLK 223
               +          +  E       K   + IIDT G  +             + R+  
Sbjct: 89  EKAHISQTSEITVYEVFIE------EKPTSLTIIDTPGYGNTKGIEKDAEIAEYLRRLFS 142

Query: 224 RLDP-HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG--------LIMTKMDGTARGGG 274
             D  H   +V  V+ A+  +    ++ +FH+V    G         ++T  DG      
Sbjct: 143 DEDGIHYIDAVCFVMKASENRLTGEELYIFHSVLSLFGKDIENNIVFLLTHSDGLP-PTD 201

Query: 275 LIPIVVTHKIP 285
            +  +    IP
Sbjct: 202 ALNAIEKADIP 212


>gi|195485613|ref|XP_002091161.1| GE13493 [Drosophila yakuba]
 gi|194177262|gb|EDW90873.1| GE13493 [Drosophila yakuba]
          Length = 4467

 Score = 39.1 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 62   VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
            V++KI++ +   +   D+   R +  ++ +  K L    +P           +L+VG  G
Sbjct: 1378 VSRKILDAIRNFKLRDDIVWTRNMTRMAVVTAKAL-EFDEP-----------VLLVGPTG 1425

Query: 122  VGKTTVIGKLSK----KMSDAGLKVMLAAGDT 149
             GKTTV   L+     ++      +     D 
Sbjct: 1426 CGKTTVCQLLASIANVQLRILNCHMHTEGADF 1457


>gi|145222336|ref|YP_001133014.1| ABC transporter related [Mycobacterium gilvum PYR-GCK]
 gi|145214822|gb|ABP44226.1| ABC transporter related protein [Mycobacterium gilvum PYR-GCK]
          Length = 659

 Score = 39.1 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 10/138 (7%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGV 119
            VA +  +++     A D      L +V+EL               F+  P  V+ +VG 
Sbjct: 361 PVAVEF-DDVRFSYPAADQVSLASLEEVAEL--DHRGGEEVLHGVSFTAEPGQVVALVGP 417

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           +G GK+T+   L++     G  V L   D  R      LK     ++   V  +      
Sbjct: 418 SGAGKSTIAALLARLYDVTGGVVRLNGTDI-RDTTFASLK-----STVGMVTQDGHLFHE 471

Query: 180 ALAYEAFKQAQAKKVDVL 197
           ++       A     D +
Sbjct: 472 SIRSNLTLAAPQAGDDEI 489


>gi|223998594|ref|XP_002288970.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976078|gb|EED94406.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 319

 Score = 39.1 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK--VMLAAG 147
           E+  ++L  + K    D S    V+++ G++G GK T + KL +K+     K  V  + G
Sbjct: 85  EVADEILGRVRKSDGGDCSGG--VVVLCGLSGTGKGTTVAKLKEKLETEDNKQVVCWSNG 142

Query: 148 DTFR 151
           + FR
Sbjct: 143 NIFR 146


>gi|219871118|ref|YP_002475493.1| antitoxin/toxin system zeta toxin, signal recognition particle
           GTPase [Haemophilus parasuis SH0165]
 gi|219691322|gb|ACL32545.1| anititoxin/toxin system zeta toxin, signal recognition particle
           GTPase [Haemophilus parasuis SH0165]
          Length = 220

 Score = 39.1 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
             +P+ I+V GV+G GK+T I   +  +    L       D +R     +LK + ++   
Sbjct: 28  EEKPYAIVVAGVSGSGKSTCI---ANLLEKISLNYFPIQADDYRKF-HPKLKEYREKFGN 83

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           D    + G+ A   A E   +A  K++++L   T G +   + L
Sbjct: 84  DQAHKKTGNFAHRFAIELLNKAFDKQLNILYETTFGNIETATNL 127


>gi|8250496|emb|CAB93626.1| FtsY protein [Mycoplasma hominis]
 gi|8250498|emb|CAB93627.1| FtsY protein [Mycoplasma hominis]
 gi|8250536|emb|CAB93639.1| FtsY protein [Mycoplasma hominis]
 gi|8250538|emb|CAB93640.1| FtsY protein [Mycoplasma hominis]
 gi|8250540|emb|CAB93641.1| FtsY protein [Mycoplasma hominis]
 gi|8250542|emb|CAB93642.1| FtsY protein [Mycoplasma hominis]
 gi|14330778|emb|CAC40856.1| FtsY protein [Mycoplasma hominis]
          Length = 117

 Score = 39.1 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 19 KGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
           G + ++    E I ++ +   ++D+   E+LE++LI SDI + + Q I+ E   +   +
Sbjct: 19 AGLSKSNSSFNEHIKELQNKHNKIDEEFFEDLEEMLIMSDISIKLVQIIINECKKEVRNE 78

Query: 78 DVSVQRVLYDVSELIHKML 96
          +++  +++   +E+I   L
Sbjct: 79 NITDPKLI---NEIIADKL 94


>gi|90423634|ref|YP_532004.1| putative ABC transporter ATP-binding protein [Rhodopseudomonas
           palustris BisB18]
 gi|90105648|gb|ABD87685.1| ABC transporter related [Rhodopseudomonas palustris BisB18]
          Length = 549

 Score = 39.1 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 11/70 (15%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPF-------NWDFSHRPHVIL-V 116
           EELL K   K     +++  V+E + + +     LSK F       N  F   P  I+ V
Sbjct: 289 EELLNKASEKQSQTAQIVIPVAERLGQNVVDVEGLSKSFGDRVLIDNLTFKLPPGGIVGV 348

Query: 117 VGVNGVGKTT 126
           +G NGVGKTT
Sbjct: 349 IGPNGVGKTT 358


>gi|212224224|ref|YP_002307460.1| lysine/arginine/ornithine transport system kinase [Thermococcus
           onnurineus NA1]
 gi|212009181|gb|ACJ16563.1| lysine/arginine/ornithine transport system kinase [Thermococcus
           onnurineus NA1]
          Length = 319

 Score = 39.1 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L+ +    D      L  + E        + K   +  +   +++ + G  G GK+T
Sbjct: 2   IDDLIERMLQGDKRATARLITLVENDEDKAREVIKKI-YPHTGNAYIVGITGPPGAGKST 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSEIGSDAA 179
           ++ KL +   + G  V + A D    F   A+      ++  +                 
Sbjct: 61  LLDKLIRVAREEGKVVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMATRGSLG 120

Query: 180 ALAY---EAFKQAQAKKVDVLIIDTAGRLHNN 208
            LA    +A K   A   DV+ ++T G     
Sbjct: 121 GLAKATSDAIKVLDAYGCDVIFVETVGVGQIE 152


>gi|148925750|ref|ZP_01809438.1| putative ATP/GTP-binding protein (mrp protein like protein)
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205355620|ref|ZP_03222390.1| putative ATP/GTP binding protein (Mrp protein ) [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|145845760|gb|EDK22851.1| putative ATP/GTP-binding protein (mrp protein like protein)
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205346397|gb|EDZ33030.1| putative ATP/GTP binding protein (Mrp protein ) [Campylobacter
           jejuni subsp. jejuni CG8421]
          Length = 368

 Score = 39.1 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 104/320 (32%), Gaps = 56/320 (17%)

Query: 14  IRKLTK----GFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVE 68
           + KL      GF    +       + +   ++ DDGV  ++E +   +     VA +I +
Sbjct: 6   LEKLKTVKYPGFEKDIVSF-----NFVKDIKIQDDGVFIDIEIV--SA--NPEVANEIRK 56

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            ++    +        L  ++  I +         N     +  +++  G  GVGK+T  
Sbjct: 57  NIIE-ALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMVSSGKGGVGKSTTT 115

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+  M+  G +V +   D +               +   +  E  +    +  +  K 
Sbjct: 116 VNLAISMAKMGKRVGILDADIYGP-------------NIPRMLGETKTQP-EVVGQRLKP 161

Query: 189 AQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQV----LDATTGQ 243
                   + + + G L      LM     +++ +++L        L V    +   TG 
Sbjct: 162 ILTHG---VYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD 218

Query: 244 NALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIPIVVTHKIPVY--------FLG- 290
             +   +     AG    + T     +D + R    + +     IP+         FL  
Sbjct: 219 AQITSAQSIPITAGV--CVSTPQTVSLDDSKR---ALDMFNKLHIPIAGVIENMSGFLCP 273

Query: 291 -VGEGINDLEPFVAKDFSAV 309
             G+  +      A+D +  
Sbjct: 274 DNGKEYDIFGKGTAEDMAKA 293


>gi|146080986|ref|XP_001464147.1| XPA-interacting protein [Leishmania infantum JPCM5]
 gi|134068237|emb|CAM66523.1| putative XPA-interacting protein [Leishmania infantum JPCM5]
 gi|322497543|emb|CBZ32617.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 327

 Score = 39.1 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           P VILVVG+ G GKTT++ ++      +G++      D
Sbjct: 25  PVVILVVGMAGTGKTTLVHRMQHYAHTSGIRSYFINLD 62


>gi|67459561|ref|YP_247185.1| Mrp protein [Rickettsia felis URRWXCal2]
 gi|75536039|sp|Q4UKB5|MRP_RICFE RecName: Full=Protein mrp homolog
 gi|67005094|gb|AAY62020.1| Mrp protein [Rickettsia felis URRWXCal2]
          Length = 318

 Score = 39.1 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 68  EELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           EEL  K   K  ++S    +  V      M     KP ++  + +  +++  G  GVGK+
Sbjct: 53  EELKAKAIDKLNEISEINKITIVFTESKPMEKKAQKPKHFVENVKKIILVASGKGGVGKS 112

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTF 150
           T+   +++++S    +V +   D +
Sbjct: 113 TISALIAQQLSLENYRVGIVDADIY 137


>gi|85712946|ref|ZP_01043986.1| Membrane ATP-dependent Zn protease [Idiomarina baltica OS145]
 gi|85693252|gb|EAQ31210.1| Membrane ATP-dependent Zn protease [Idiomarina baltica OS145]
          Length = 641

 Score = 39.1 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E  TK   +DV+      +    +   L   SK F       P  +L+VG  G GK
Sbjct: 143 RLMSEDQTKTTFRDVAGCDEAKEEVTELVDYLKDPSK-FQRLGGKIPKGVLMVGPPGTGK 201

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K +S        +   +                  +       S    +  +
Sbjct: 202 T----LLAKAISGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQ 242

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 243 AKKSAPCIIF-IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN 301

Query: 242 GQNALR 247
             + L 
Sbjct: 302 RPDVLD 307


>gi|281422657|ref|ZP_06253656.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           copri DSM 18205]
 gi|281403327|gb|EFB34007.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Prevotella
           copri DSM 18205]
          Length = 761

 Score = 39.1 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 89/261 (34%), Gaps = 42/261 (16%)

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
             D        + + +L K Y +D +V +V+  V          ++K    D       +
Sbjct: 457 MKDENNDALATLRQRILDKIYGQDKAVDKVVEAVM---------MAKAGLTDDDKPLASL 507

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L VG  GVGKT V  +L+K++            +  R    D  +     T A  + S  
Sbjct: 508 LFVGPTGVGKTEVARQLAKEL----------GIELVR---FDMSEYTEKHTVAKLIGSPA 554

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN--SILMAGIGKMIRVLKRLDPHAPHS 232
           G              +     VL++D   + H++  +IL+  +        +       +
Sbjct: 555 GYVGYEDGGLLTDAIRKTPNCVLLLDEIEKAHSDIYNILLQVMDYARLTDNKGQKADFRN 614

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           V+ ++ +  G           A  G  G +       +RG  ++  V     P  F+   
Sbjct: 615 VILIMTSNAGAQ-----YASRASVGFNGNV-------SRGEAMLAQVKKTFKP-EFI--- 658

Query: 293 EGINDLEPFV--AKDFSAVIT 311
             ++D+  F    K  + +I 
Sbjct: 659 NRLSDMVVFNDMDKHMAELIL 679


>gi|297621075|ref|YP_003709212.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Waddlia
           chondrophila WSU 86-1044]
 gi|297376376|gb|ADI38206.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Waddlia
           chondrophila WSU 86-1044]
          Length = 869

 Score = 39.1 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 36/216 (16%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDI----G 59
           QKVA      I  L K       KL      ++          EE+++ LI   +    G
Sbjct: 495 QKVAELRYEKIPALKKAIEEAQEKLNAKPNRLLQ---------EEVDEQLIAQIVSKWTG 545

Query: 60  VAVAQKI---VEELL--TKRYAKDVSVQRV-LYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           + V++ +    E+LL   K   K V  Q + +  VSE I +    LS P     +     
Sbjct: 546 IPVSKMMEGEAEKLLHLEKEIGKRVIGQEMGVKAVSEAIRRSRSGLSDP-----NRPIGA 600

Query: 114 ILVVGVNGVGKTTVIGK-LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            L +G  GVGK T + K L++++ D   +  +   D          +       +  + S
Sbjct: 601 FLFLGPTGVGK-TELAKSLAEQLFDQ--EEAMIRLDMS--------EYMEKHAVSKLIGS 649

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             G        +  +  + +   V+++D   + H++
Sbjct: 650 PPGYVGYDEGGQLTEALRRRPYTVVLLDEVEKAHHD 685


>gi|284924251|emb|CBG37352.1| putative type VI secretion protein [Escherichia coli 042]
          Length = 885

 Score = 39.1 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 76/210 (36%), Gaps = 40/210 (19%)

Query: 45  VREELEDLL-IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           +++E  +LL +  DIG             +   +DV++        E I + L       
Sbjct: 568 MKDEQTELLHLEKDIG------------RRVVGQDVAL--------ESIAQRLRAAKTGL 607

Query: 104 NWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFR-SAAIDQLKIW 161
               +    V L+VG +GVGKT T +  L+  M      ++      ++    + QLK  
Sbjct: 608 T-SGNGPQEVFLLVGPSGVGKTETALA-LADVMYGGEKSLITINLSEYQEPHTVSQLKGS 665

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS-ILMAG--IGKM 218
                       +G     +  EA    + +   V+++D   + H +   L         
Sbjct: 666 P--------PGYVGYGQGGILTEAV---RKRPYSVVLLDEVEKAHRDVLNLFYQVFDRGF 714

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           +R  +  +    ++V+  + +  G + L Q
Sbjct: 715 MRDGEGREIDFRNTVIL-MTSNLGSDLLMQ 743


>gi|226470306|emb|CAX70433.1| YME1-Like (Mitochondrial Escape) AAA protease [Schistosoma
           japonicum]
          Length = 627

 Score = 39.1 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 57/169 (33%), Gaps = 23/169 (13%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
             V  ++ +++  +  P  + FN   +  P  +L+VG  GVGKT     L+K +S     
Sbjct: 172 DEVKKELQDIVEFLRNP--EKFNHIGAKLPKGVLLVGPPGVGKT----LLAKAVSGE--- 222

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                      A +  L +        FV           A           +D   ID+
Sbjct: 223 -----------AQVPFLYVSGSSFEEVFVGLGASRVRQLFAAAKQNSPCLIFIDE--IDS 269

Query: 202 AGRLHNNS-ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            GR   +S         + ++L  +D       + VL AT     L + 
Sbjct: 270 VGRNRTSSPHHPYANQTINQLLAEMDGFQSTEGIIVLGATNQAEDLDKA 318


>gi|256827219|ref|YP_003151178.1| hypothetical protein Ccur_07920 [Cryptobacterium curtum DSM 15641]
 gi|256583362|gb|ACU94496.1| hypothetical protein Ccur_07920 [Cryptobacterium curtum DSM 15641]
          Length = 286

 Score = 39.1 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 7/125 (5%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT----FRSA-AIDQ 157
                 + P +++V G  GVGKTT    L+   + AG +V+LA  D     FRS+ +++ 
Sbjct: 26  LPTSLGNLPSIVVVCGYYGVGKTTFSLNLAIAAARAGRQVVLADLDVVNPYFRSSDSVEV 85

Query: 158 LKIWADRTSADFVCSEIGSDAAA--LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           L   +    A                   A   A+ +   +L++D  G      +L    
Sbjct: 86  LHTHSVDLIAPPFAGTSLDTPVVSGQVEAAIDAARMRPGGLLVLDAGGDDAGARVLGRLA 145

Query: 216 GKMIR 220
             + R
Sbjct: 146 ASIAR 150


>gi|47230418|emb|CAF99611.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1359

 Score = 39.1 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 7/111 (6%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +     QK  E +  K  A+  S       + E    + +   +    +     ++++VV
Sbjct: 533 VDYKAEQKFAEHMKEKTEAR--SEFAKKKSLLEQRQYLPIFAVRQQLLNIIRDNNIVIVV 590

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTS 166
           G  G GKTT   +L++ + + G       G T   R AA+   K  ++   
Sbjct: 591 GETGSGKTT---QLTQYLHEDGYTSYGMVGCTQPRRVAAMSVAKRVSEEIG 638


>gi|218196398|gb|EEC78825.1| hypothetical protein OsI_19112 [Oryza sativa Indica Group]
          Length = 1517

 Score = 39.1 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 29/146 (19%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG-----VAV--AQKIVEELLTK 73
                 KL +      + R++ +         LI+ DI      V     +  V+ ++ K
Sbjct: 255 LLRLRKKLGKLFKKSKARRKISN---------LIQ-DINKKFEQVKARHVKYTVDSVVLK 304

Query: 74  RYAK---DVSVQRVLYDVSELI------HKMLMPLSKPFNWDFSHRP-HVILVVGVNGVG 123
             A    D  +Q +    +EL+        ++  LS   + D S +   VI VVG  G+G
Sbjct: 305 SLAATTIDPRLQNLYKRATELVGIDGPRDDLINKLSLGGDVDVSDKKMKVISVVGFGGLG 364

Query: 124 KTTVIGKLSK-KMSDAGLKVMLAAGD 148
           KTT + K                  D
Sbjct: 365 KTT-LAKAVYDHFKPHFKCRASVPVD 389


>gi|209881462|ref|XP_002142169.1| ATPase, AAA family protein [Cryptosporidium muris RN66]
 gi|209557775|gb|EEA07820.1| ATPase, AAA family protein [Cryptosporidium muris RN66]
          Length = 626

 Score = 39.1 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 36/192 (18%)

Query: 68  EELLTKRYAKDVSVQRVLYDVS--ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           + L    + K    + +L  +   E+++K++    K  N   S+RP +IL  G  G GKT
Sbjct: 358 DNLAGYEHVKTQIEKHILLHIKYPEILNKIVNGTRKQDNS--SNRPKLILFEGPPGTGKT 415

Query: 126 TV---IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           T    I K++K                     I  L +  +   + +   E     A + 
Sbjct: 416 TSARIISKVAK---------------------IPLLYVSLENIISKWY-GESEQKLAQVF 453

Query: 183 YEA--FKQAQAKKVDVLIIDT-AGRLHNNSILMAGIGKMIRVLKRLDP--HAPHSVLQVL 237
             A  F       +D   IDT A    N   +  G  +++ VL R           + ++
Sbjct: 454 NLAKQFDNGCIIFIDE--IDTLASSRDNTFNMHEGSKRILSVLLRKLDGFDTIKDKILLI 511

Query: 238 DATTGQNALRQV 249
            AT  +N + Q 
Sbjct: 512 CATNRRNDIDQA 523


>gi|186478922|ref|NP_174037.3| ATP binding / protein binding / transmembrane receptor [Arabidopsis
           thaliana]
 gi|332192668|gb|AEE30789.1| transmembrane receptors / ATP binding protein [Arabidopsis
           thaliana]
          Length = 1384

 Score = 39.1 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 7/180 (3%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           EL+ KR   ++S       V E I  +   L  L+   + + S    V+ + G+ G+GKT
Sbjct: 168 ELVVKRVLAELS--NTPEKVGEFIVGLESPLKDLTGLIDTESSSGVQVLGLYGMGGIGKT 225

Query: 126 TVIGKLSKKMSDAGLKVMLAAGD-TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T + K          +      D   RS+A + L         +        +  ++  E
Sbjct: 226 T-LAKAFYNKIVGNFEQRAFISDIRERSSAENGLVTLQKTLIKELFRLVPEIEDVSIGLE 284

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             K    +K  ++++D    +     L+       +    +       +L  L       
Sbjct: 285 KIKANVHEKKIIVVLDDVDHIDQVHALVGETRWYGQGTLIVITTRDSEILSKLSVNQQYE 344


>gi|157363380|ref|YP_001470147.1| phosphoribulokinase/uridine kinase [Thermotoga lettingae TMO]
 gi|157313984|gb|ABV33083.1| phosphoribulokinase/uridine kinase [Thermotoga lettingae TMO]
          Length = 555

 Score = 39.1 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM-LMPLSKPFNWDFSHRPHVILV 116
           IG+     +  EL+ +   + V     L  ++E +H+  +  +++ F+   +    +IL+
Sbjct: 243 IGINTVADL-NELIARGEREVVD----LMILNEALHEKRIAQIAEQFSESMAR---LILI 294

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            G +  GKTT   +L  ++   G K +  + D +
Sbjct: 295 AGPSSSGKTTFAKRLLVQLKVFGYKPVTVSLDDY 328


>gi|34539890|ref|NP_904369.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Porphyromonas
           gingivalis W83]
 gi|34396201|gb|AAQ65268.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Porphyromonas
           gingivalis W83]
          Length = 859

 Score = 39.1 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 28/136 (20%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISS---RRLDDGVREELEDLLIRSDIGV 60
           Q++A E   W  +++K   +    +   +  +++     RL  G  E L      +D   
Sbjct: 501 QQIAEEKKKWEEQMSKHRETVDENVVAHVVALMTGVPAERLSTGEGERLRT---MAD--- 554

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGV 119
                   +L TK   +D +++++++ +                     +P    L +G 
Sbjct: 555 --------DLKTKVVGQDTAIEKMVHAIQ----------RNRLGLRNEKKPIGSFLFLGP 596

Query: 120 NGVGKTTVIGKLSKKM 135
            GVGKT +  KL++ +
Sbjct: 597 TGVGKTYLAKKLAEYL 612


>gi|83717536|ref|YP_439556.1| ParA family protein [Burkholderia thailandensis E264]
 gi|257142684|ref|ZP_05590946.1| ParA family protein, putative [Burkholderia thailandensis E264]
 gi|83651361|gb|ABC35425.1| ParA family protein, putative [Burkholderia thailandensis E264]
          Length = 217

 Score = 39.1 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 114 ILVVG--VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           IL VG    GVGK+T   +L+  ++  G +V L  GD+ R++           T    + 
Sbjct: 2   ILAVGNPKGGVGKSTTAVQLAIGLALDGARVWLVDGDSQRTS--LSAITARAHTGRPLIA 59

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           +   +D  +L  +  +Q    + D ++ID  GR 
Sbjct: 60  ASAYADGPSLRAQVLQQC--VQFDHVVIDVGGRD 91


>gi|313144489|ref|ZP_07806682.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129520|gb|EFR47137.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 368

 Score = 39.1 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 99/283 (34%), Gaps = 40/283 (14%)

Query: 24  TSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAV-------AQKIVEELLT 72
           T  ++ + + ++     S   +  G  +E++     SD GV +       AQ++++ L  
Sbjct: 5   TQEQITQNLKNVIYPNFSKDIVSFGFLKEVK----VSDEGVYIRIDIPSSAQEVIDTLKI 60

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV--GVNGVGKTTVIGK 130
           +   +  S+ +      E+      P  +P   + +      ++V  G  GVGK+T    
Sbjct: 61  EVQKQLDSLLQGQNLNLEINPPKPAPKPQPKTKNLAPHIKHFVMVSSGKGGVGKSTSSVN 120

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  ++  G +V L   D +       L + A +       +E       L     +   
Sbjct: 121 LAIALAQQGKRVGLLDADIYGPNIPRMLGLNATKAEV----NEAQKKLIPLKAFGVEMMS 176

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
                 ++ D          L+     ++R ++++      S L VL             
Sbjct: 177 MG----VLYD------EGQSLIWRGPMIMRAIEQMLTDVLWSELDVLVIDMPPGTGDAQL 226

Query: 251 MFHAVAGTT-GLIMT-----KMDGTARGGGLIPIVVTHKIPVY 287
                   + G+I+T      +D +AR    + +    K+P+ 
Sbjct: 227 TLAQSVPVSAGVIVTTPQKVSLDDSAR---SLDMFDKLKVPIA 266


>gi|260221126|emb|CBA29380.1| Uncharacterized protein CC_2483 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 341

 Score = 39.1 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 25/133 (18%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML------ 144
           L+  +L    K F    S         GV GVGK+T I  L   +   G +V +      
Sbjct: 43  LLTALLPHTGKSFRLGIS---------GVPGVGKSTFIEALGLYLIGQGHRVAVLTIDPS 93

Query: 145 -------AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                    GD  R   ++ L +           S      A    EA    +A   D++
Sbjct: 94  SSVSGGSILGDKTR---MEHLSMHEKAFIRPSPSSGTLGGVAEKTREAMLVCEAAGYDIV 150

Query: 198 IIDTAGRLHNNSI 210
           I++T G   + + 
Sbjct: 151 IVETVGVGQSETA 163


>gi|118475352|ref|YP_891968.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Campylobacter fetus subsp. fetus 82-40]
 gi|118414578|gb|ABK82998.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Campylobacter fetus subsp. fetus 82-40]
          Length = 183

 Score = 39.1 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           V G +G GKTT+I K++ K+ + G KV +   D
Sbjct: 3   VSGRSGSGKTTLIAKIASKLIEQGYKVAITKHD 35


>gi|319400709|gb|EFV88931.1| ABC transporter family protein [Staphylococcus epidermidis FRI909]
          Length = 644

 Score = 39.1 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 22/185 (11%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-KKMS 136
           D +    +  + +L      P+++P N +     H I ++G NGVGKTT+I  ++ K   
Sbjct: 323 DRNTGNDVMHIHDLKIGYDSPITQPINLEVFKGDH-IAIIGPNGVGKTTLIKTIAEKHPK 381

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIW--ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             G  +  A     +    DQ +    +++T  D+V  +              +    + 
Sbjct: 382 LGGQIIFGANL---QIGYYDQKQAEFKSNKTILDYVWDQYPHMNEKDVRAVLGRFLFVQE 438

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG-----QNALRQV 249
           DV  I         + L   +  + R           +VL + + T       +  L Q 
Sbjct: 439 DVKKIINDLSGGEKARLQLALLMLQR----------DNVLILDEPTNHLDIDSKEMLEQA 488

Query: 250 EMFHA 254
                
Sbjct: 489 LKDFE 493


>gi|315442769|ref|YP_004075648.1| ABC-type multidrug transporter, ATPase and permease [Mycobacterium
           sp. Spyr1]
 gi|315261072|gb|ADT97813.1| ABC-type multidrug transport system, ATPase and permease component
           [Mycobacterium sp. Spyr1]
          Length = 659

 Score = 39.1 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 10/138 (7%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGV 119
            VA +  +++     A D      L +V+EL               F+  P  V+ +VG 
Sbjct: 361 PVAVEF-DDVRFSYPAADQVSLASLEEVAEL--DHRGGEEVLHGVSFTAEPGQVVALVGP 417

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           +G GK+T+   L++     G  V L   D  R      LK     ++   V  +      
Sbjct: 418 SGAGKSTIAALLARLYDVTGGVVRLNGTDI-RDTTFASLK-----STVGMVTQDGHLFHE 471

Query: 180 ALAYEAFKQAQAKKVDVL 197
           ++       A     D +
Sbjct: 472 SIRSNLTLAAPQAGDDEI 489


>gi|183982317|ref|YP_001850608.1| LAO/AO transport system kinase [Mycobacterium marinum M]
 gi|183175643|gb|ACC40753.1| LAO/AO transport system kinase [Mycobacterium marinum M]
          Length = 336

 Score = 39.1 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAA--------IDQ 157
           S + H + + GV GVGK+T I  L   + + G KV + A D  + R+          + +
Sbjct: 60  SGKAHRVGITGVPGVGKSTTIEALGMYLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMAR 119

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           L +  D        S      A    E+    +A   DV++I+T G   + 
Sbjct: 120 LAMHPDAYVRPSPTSGTLGGVAKATRESVVLLEAAGFDVVLIETVGVGQSE 170


>gi|161617554|ref|YP_001591519.1| hypothetical protein SPAB_05413 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366918|gb|ABX70686.1| hypothetical protein SPAB_05413 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 585

 Score = 39.1 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 25/159 (15%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ++ +G  GVGKTTV   ++  ++  G KV L   D    AA     +     +      +
Sbjct: 331 VMTMGKGGVGKTTVAASVAVLLAKRGHKVHLTTSD---PAAHLSYTLDGSLPNLQVSRID 387

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-------RVLKRLD 226
              +         +           +D  G       L +   + I       R++K  D
Sbjct: 388 PKVETERYRRFVLENQGKG------LDAEGLAVLEEDLRSPCTEEIAVFQAFSRIIKEAD 441

Query: 227 PHAPH-------SVLQVLDAT--TGQNALRQVEMFHAVA 256
            H            L +LDAT    +  +RQ+   H   
Sbjct: 442 DHFVIMDTAPTGHTLLLLDATGAYHREMVRQMGQTHDHV 480


>gi|154252157|ref|YP_001412981.1| arginine/ornithine transport system ATPase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156107|gb|ABS63324.1| LAO/AO transport system ATPase [Parvibaculum lavamentivorans DS-1]
          Length = 346

 Score = 39.1 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + S          L+ ++L    K      S  P         GVGK+T      + ++ 
Sbjct: 44  ESSRPDHQKVAQALLAELLPETGKAIRLGLSGAP---------GVGKSTFTEAFGQFLTG 94

Query: 138 AGLKVMLAAGD--TFRSAAI-----DQLKIWADRTSADFVCSEIGSDAAALAY---EAFK 187
            G KV + A D  + R+         ++++ A   +A    S  G     +A    EA  
Sbjct: 95  RGHKVAVLAIDPSSARTGGSILGDKTRMELLARDPNAFIRPSPSGGTLGGVARRTREAML 154

Query: 188 QAQAKKVDVLIIDTAGRLHNNSI 210
             +A   DV++I+T G   + + 
Sbjct: 155 LTEAAGYDVIMIETVGVGQSETA 177


>gi|158319489|ref|YP_001511996.1| LAO/AO transport system ATPase [Alkaliphilus oremlandii OhILAs]
 gi|158139688|gb|ABW18000.1| LAO/AO transport system ATPase [Alkaliphilus oremlandii OhILAs]
          Length = 313

 Score = 39.1 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 74/223 (33%), Gaps = 40/223 (17%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +++AQ++++             +    +  +++  +         +  + +  V+ + G 
Sbjct: 1   MSLAQRLLDGDKRAAARLITMFENNDKEAIDILKDL---------YQHTGKAQVVGITGP 51

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
            G GK+T+  KL+K +   G K+ + A D   ++      I  DR     + ++      
Sbjct: 52  PGAGKSTLTDKLAKALRKEGKKIGIIAIDP--TSPFTGGSILGDRVRMSDLYTDPDVFIR 109

Query: 180 ALAYE------------AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
           ++               A K       D + I+T G   +                    
Sbjct: 110 SMGTRGHLGGLSKATLGATKILDIYGCDYIFIETVGVGQSEVD---------------IV 154

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
            A  +VL V+    G + ++ ++      G     + K D   
Sbjct: 155 KAADTVLMVMVPGLG-DDIQAIKAGIMEIG-DVFAINKADRDG 195


>gi|83647216|ref|YP_435651.1| urease accessory protein UreG [Hahella chejuensis KCTC 2396]
 gi|123531908|sp|Q2SDP8|UREG_HAHCH RecName: Full=Urease accessory protein ureG
 gi|83635259|gb|ABC31226.1| urease accessory protein UreG [Hahella chejuensis KCTC 2396]
          Length = 204

 Score = 39.1 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 70/202 (34%), Gaps = 37/202 (18%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKIWA-DRTSA 167
           G  G GKT ++ +L +++ +    + +   D +         R  A+ + +I   +    
Sbjct: 12  GPVGSGKTALVARLCQELRER-FNIAVVTNDIYTEEDAQFLIRHQALTEDRIIGVETGGC 70

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                   +     A +    A+   +D++++++ G       L A             P
Sbjct: 71  PHTAIREDASMNLAAIDTLT-ARHPGLDLVLVESGG-----DNLSATFS----------P 114

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV------T 281
                 L V+D + G    R  +    +  +  LI+ K D     G  + ++        
Sbjct: 115 ELSDLTLYVIDVSAGDKIPR--KGGPGITKSDLLIINKTDLAPIVGASLEVMDRDARKMR 172

Query: 282 HKIPVYF--LGVGEGINDLEPF 301
              P  F  +  GEG+ D+  F
Sbjct: 173 GDKPFIFSNMKTGEGLQDIIRF 194


>gi|225433948|ref|XP_002267553.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1045

 Score = 39.1 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 30/161 (18%)

Query: 65  KIVEELLTKRY-----AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +++++L  +R       +++       DV  L+ ++L   +  F         V+ VVG+
Sbjct: 303 ELLQKLRERRIQLEQGVENLDFVSFDDDVHALVTRLLADDNHFF---------VVSVVGM 353

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
            G GKTT + KL            +     +R+   + LK         F          
Sbjct: 354 EGTGKTT-LAKLIYH------NDAVVNHFHYRAFGFELLK----DVRKPFGEPGSSMSPE 402

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
             A + FK   A K  ++++D A    ++      +   +R
Sbjct: 403 KRA-QPFKAFLADKRCLIVLDDA----HDESFKNEMITALR 438


>gi|188579642|ref|YP_001923087.1| arginine/ornithine transport system ATPase [Methylobacterium populi
           BJ001]
 gi|179343140|gb|ACB78552.1| LAO/AO transport system ATPase [Methylobacterium populi BJ001]
          Length = 329

 Score = 39.1 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 28/174 (16%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +++ + L+  D   A+A+ I   L   R A           V +LI  +L    +     
Sbjct: 9   DQIRERLLAGD-RAALARAIT--LAESRRA------DHRAAVRDLIDAVLPQTGRAIRVG 59

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAI-----DQLK 159
            +         GV GVGK+T I  L   ++ AG KV + A D  + R+         ++ 
Sbjct: 60  IT---------GVPGVGKSTTIDALGSLLTQAGHKVAVLAVDPSSTRTGGSILGDKTRMA 110

Query: 160 IWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             A   +A    S        +A    E     +A   DV++++T G   + + 
Sbjct: 111 RLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA 164


>gi|168705679|ref|ZP_02737956.1| AAA ATPase [Gemmata obscuriglobus UQM 2246]
          Length = 224

 Score = 39.1 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 50/165 (30%), Gaps = 8/165 (4%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR--SAAIDQLKIW 161
                 RP  I + G++G GKT    +L+  M  A +   +   D+    +   D + + 
Sbjct: 6   KAKRQRRPLKISLEGLSGSGKTFSALRLAFAMRRANIGKRIVIADSENESAGLYDGVTMD 65

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT------AGRLHNNSILMAGI 215
            ++   +               E ++       D++I D+            +    A  
Sbjct: 66  GEKWEYEVCPIPHDKQNPGGYAECYEHLVGAGYDIVIFDSLSHAWHGAMEQVDRYARANK 125

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
           G       ++ P     +  + D         +V+  +      G
Sbjct: 126 GDKFGGWAQVTPEQRRMLTTLTDPRAHSIVTMRVKSEYERVDDAG 170


>gi|298369089|ref|ZP_06980407.1| type VI secretion ATPase, ClpV1 family [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298283092|gb|EFI24579.1| type VI secretion ATPase, ClpV1 family [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 876

 Score = 39.1 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 72/190 (37%), Gaps = 22/190 (11%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDI-----GVAVAQKIVEELLTKRYAKDVS 80
            KL   +  +  ++ L   + +E    L+ +D+     G+ V + + +EL       D  
Sbjct: 523 KKLVTELKALQGTKPLVMPLVDE----LVIADVVADWTGIPVGKMMKDELEAVLMLTDTL 578

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKT-TVIGKLSKKMSDA 138
            QR++     L        +   N D  ++P  V ++ G +GVGKT T +  L+      
Sbjct: 579 AQRIIGQNHGLEAIARRIQTSRANLDNPNKPIGVFMLAGPSGVGKTETALA-LADTFYGG 637

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
              V+      F+ A        +    A      +G     +  EA ++   +   V++
Sbjct: 638 EQNVITINMSEFQEA-----HTVSTLKGAP--PGYVGYGEGGILTEAVRR---RPYSVVL 687

Query: 199 IDTAGRLHNN 208
           +D   + H +
Sbjct: 688 LDEVEKAHPD 697


>gi|291557817|emb|CBL34934.1| primosomal protein N' [Eubacterium siraeum V10Sc8a]
          Length = 824

 Score = 39.1 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 22/190 (11%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++   L     A       VL D    ++  +  L        S +P   L+ GV G GK
Sbjct: 265 EVSRSLTAGAKAVRSIDDIVLSDEQSAVYSGMSELMD------SQKPQCALLKGVTGSGK 318

Query: 125 TTVIGKLSKKMSDAGLKVMLAA-------------GDTFRSA-AIDQLKIWADRTSADFV 170
           TTV  KL  K    G   ++                D F S  A+    +   + + ++ 
Sbjct: 319 TTVFLKLIDKALKQGKTALMLVPEISLTPQMVRNFTDLFGSNVAVIHSNLSLGQRTDEYK 378

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E G     +   +   A    + +++ID  G     S          R + +      
Sbjct: 379 RIEKGEARIVIGTRSAVFAPLDNIGIIVIDEEGEHTYKSEKSPRYQA--RSIAKQRCFYH 436

Query: 231 HSVLQVLDAT 240
           ++ L +  AT
Sbjct: 437 NATLLLASAT 446


>gi|238061677|ref|ZP_04606386.1| ABC transporter ATP-binding protein [Micromonospora sp. ATCC 39149]
 gi|237883488|gb|EEP72316.1| ABC transporter ATP-binding protein [Micromonospora sp. ATCC 39149]
          Length = 620

 Score = 39.1 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +VGVNGVGKTT+I  L+      G ++ +   D
Sbjct: 393 LVGVNGVGKTTLIKLLAGLYEPTGGRITVDGVD 425


>gi|206895112|ref|YP_002246446.1| nucleotide-binding protein [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737729|gb|ACI16807.1| nucleotide-binding protein [Coprothermobacter proteolyticus DSM
           5265]
          Length = 270

 Score = 39.1 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 96  LMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           L   +     + S   HVI VV G  GVGK+TV   L+ +++  G KV +   D
Sbjct: 10  LGADNSLTPSEDSEMSHVIAVVSGKGGVGKSTVTALLAVELAKRGYKVGILDAD 63


>gi|167390116|ref|XP_001739217.1| uridine cytidine kinase I [Entamoeba dispar SAW760]
 gi|165897194|gb|EDR24431.1| uridine cytidine kinase I, putative [Entamoeba dispar SAW760]
          Length = 534

 Score = 39.1 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 16/104 (15%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHK------MLMPLSKPFNWD---------- 106
            +KI+E                + D+++ I K      M+M   +               
Sbjct: 250 TKKIIENYKATNKVARAVGIECIGDLNKKIIKGDKTTVMMMENRQDMEIAQIAEDAIEKI 309

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +    +I + G +  GKTT   KL  ++   G+  ++ + D +
Sbjct: 310 KTRGVKLISIAGPSASGKTTFSKKLGVQLKLRGITPVVLSTDDY 353


>gi|157964188|ref|YP_001499012.1| hypothetical protein RMA_0171 [Rickettsia massiliae MTU5]
 gi|157843964|gb|ABV84465.1| Mrp [Rickettsia massiliae MTU5]
          Length = 320

 Score = 39.1 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 68  EELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGK 124
           EE+  K   K  ++S    +  V      M   + KP  +   +   +ILV  G  GVGK
Sbjct: 54  EEIRLKAINKLNEISEVNKITIVFTESKPMENKVQKP-KYFVENVKKIILVASGKGGVGK 112

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +T+   +++++S    +V +   D +
Sbjct: 113 STISALIAQQLSLENYRVGIVDADIY 138


>gi|92109650|ref|YP_571937.1| cobyrinic acid a,c-diamide synthase [Nitrobacter hamburgensis X14]
 gi|91802732|gb|ABE65105.1| Cobyrinic acid a,c-diamide synthase [Nitrobacter hamburgensis X14]
          Length = 251

 Score = 39.1 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           ML  +  P     +  P +  +     G GKTTV   L+ + +  G    +   D     
Sbjct: 4   MLYVVIPPMPVGGTQLPSIFAIANPKGGSGKTTVAIILAGEFAKHGYSAAIVDADPQ--G 61

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           +  Q    +          ++       A  A    +    DV+++DT G
Sbjct: 62  SSYQWHASSVARGLSPQGVDLVRAPDETAL-AQTIDRLDGYDVVVVDTPG 110


>gi|77456967|ref|YP_346472.1| hypothetical protein Pfl01_0740 [Pseudomonas fluorescens Pf0-1]
 gi|77380970|gb|ABA72483.1| putative ATPase [Pseudomonas fluorescens Pf0-1]
          Length = 660

 Score = 39.1 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRP--HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           ++++  + L P  +  N+D S  P   VIL+  +NG GKTT++   + ++   G K +  
Sbjct: 6   INQISIENLGPFRERQNFDLSVMPGRPVILLKALNGSGKTTLLT--ALQIGLYGYKAINI 63

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           A    R    +QL     RT A          +  +
Sbjct: 64  A----RRTEYEQLIAGLQRTDATGPARIEMHLSVEV 95


>gi|312876101|ref|ZP_07736089.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797087|gb|EFR13428.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 616

 Score = 39.1 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 24/184 (13%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L  K    DV+      +  + +   L    K      +  P  IL+VG  G GKT 
Sbjct: 158 IQDLKKKVTFADVAGADEEKEELKEVIDFLKNPRKYIELG-ARIPKGILLVGPPGTGKT- 215

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
               L+K ++                A +    I        FV                
Sbjct: 216 ---LLAKAVAGE--------------AGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKR 258

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                  +D   ID  GR     +          + ++L  +D    +  + V+ AT   
Sbjct: 259 NAPCVVFIDE--IDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFGTNEGIIVMAATNRP 316

Query: 244 NALR 247
           + L 
Sbjct: 317 DILD 320


>gi|312792835|ref|YP_004025758.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179975|gb|ADQ40145.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 616

 Score = 39.1 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 24/184 (13%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L  K    DV+      +  + +   L    K      +  P  IL+VG  G GKT 
Sbjct: 158 IQDLKKKVTFADVAGADEEKEELKEVIDFLKNPRKYIELG-ARIPKGILLVGPPGTGKT- 215

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
               L+K ++                A +    I        FV                
Sbjct: 216 ---LLAKAVAGE--------------AGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKR 258

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                  +D   ID  GR     +          + ++L  +D    +  + V+ AT   
Sbjct: 259 NAPCVVFIDE--IDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFGTNEGIIVMAATNRP 316

Query: 244 NALR 247
           + L 
Sbjct: 317 DILD 320


>gi|307129378|ref|YP_003881394.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Dickeya dadantii 3937]
 gi|306526907|gb|ADM96837.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Dickeya dadantii 3937]
          Length = 647

 Score = 39.1 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|296532054|ref|ZP_06894831.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Roseomonas cervicalis ATCC 49957]
 gi|296267616|gb|EFH13464.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Roseomonas cervicalis ATCC 49957]
          Length = 234

 Score = 39.1 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           V+ +VG NG GKTT +  ++  +  +G ++     D  R    +
Sbjct: 29  VVTIVGANGAGKTTTLRTIAGLLRPSGGRISFEGEDISRLTPHE 72


>gi|296162904|ref|ZP_06845684.1| arsenite-activated ATPase ArsA [Burkholderia sp. Ch1-1]
 gi|295886875|gb|EFG66713.1| arsenite-activated ATPase ArsA [Burkholderia sp. Ch1-1]
          Length = 584

 Score = 39.1 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 17/192 (8%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L    + + +   + +  +S  +   L+PL          R  +I+ +G  GVGKTTV  
Sbjct: 287 LKAYLHPEQIGASQTVASLSVELPGGLLPLIDDLE---KARHGLIMTMGKGGVGKTTVAS 343

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            ++ +++  G  V+L+  D    AA     +            +   +      E   +A
Sbjct: 344 AIALELAQRGHNVLLSTTD---PAAHVAWTLQESLPGLSVAHIDAALEVDRYRDEVLARA 400

Query: 190 QAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA- 245
            A       +D   +      L         + R   R    A  S + +  A TG    
Sbjct: 401 GA------YLDAQAKAMLEEDLRSPCTEEIAVFRAFARTVDEARDSFVILDTAPTGHTIL 454

Query: 246 -LRQVEMFHAVA 256
            +   E +H   
Sbjct: 455 LMDSAEAYHREV 466


>gi|261820121|ref|YP_003258227.1| ATP-dependent metalloprotease FtsH [Pectobacterium wasabiae WPP163]
 gi|261604134|gb|ACX86620.1| ATP-dependent metalloprotease FtsH [Pectobacterium wasabiae WPP163]
          Length = 651

 Score = 39.1 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  IL+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVSELVEYLREPSRFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|328886574|emb|CCA59813.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Streptomyces
           venezuelae ATCC 10712]
          Length = 853

 Score = 39.1 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 15/140 (10%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +L  + +A+ V     +  VSE + +    +  P     +      L +G  GVGKT + 
Sbjct: 533 KLEEEMHARIVGQDEAVTAVSEAVRRSRAGMGDP-----NRPVGSFLFLGPTGVGKTELA 587

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+  +           GD  R    D  +     T A  V +  G      A +  ++
Sbjct: 588 KTLAGLL----------FGDEDRMIRFDMSEFQEKHTVARLVGAPPGYVGYEEAGQLTEK 637

Query: 189 AQAKKVDVLIIDTAGRLHNN 208
            +     V++ D   + H +
Sbjct: 638 VRRNPYSVVLFDEVEKAHPD 657


>gi|313672077|ref|YP_004050188.1| molybdopterin-guanine dinucleotide biosynthesis protein b
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938833|gb|ADR18025.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 217

 Score = 39.1 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            +V   VG +G GKTT I KL + +++ G KV     D
Sbjct: 2   NNVFSFVGASGSGKTTFIEKLIRFLTEKGYKVGAIKHD 39


>gi|307295346|ref|ZP_07575185.1| chromosome partitioning protein ParA [Sphingobium chlorophenolicum
           L-1]
 gi|306878849|gb|EFN10068.1| chromosome partitioning protein ParA [Sphingobium chlorophenolicum
           L-1]
          Length = 398

 Score = 39.1 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 80  SVQRVLYDVSELI--HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +R  Y V EL+   ++L    +    D      V    G  GVGK+TV   L+   + 
Sbjct: 72  NGRRPGYKVEELLNMRQVLGASPERAPMDVPAIIAVQNFKG--GVGKSTVTTHLAHYFAV 129

Query: 138 AGLKVMLAAGDTF 150
            G +V++   D+ 
Sbjct: 130 QGYRVLVVDCDSQ 142


>gi|257791275|ref|YP_003181881.1| Cobyrinic acid ac-diamide synthase [Eggerthella lenta DSM 2243]
 gi|257475172|gb|ACV55492.1| Cobyrinic acid ac-diamide synthase [Eggerthella lenta DSM 2243]
          Length = 253

 Score = 39.1 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 17/173 (9%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+   +  GL+ +L   D  +++A D   ++    +      E+    A 
Sbjct: 12  GVGKTTTAVNLATIYARRGLRTLLIDLDP-QASATDFFGLYDRAAAERRGAVELLYGNAP 70

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +   AF+  +A  + V+   T   +  N +L+       R+   LD  A    + ++D +
Sbjct: 71  VGDVAFE-TEADGLSVVPS-TIELVDQNELLLREQ----RLRFALDDCAGDYDVCIVDCS 124

Query: 241 TGQNALRQVEMFHAVAGTTGLIM--TKMDGTARGGGLI------PIVVTHKIP 285
                L      +  A   G+++   K+D T   G  +       I    ++P
Sbjct: 125 PTMKRL--AFNAYLAAAGDGMVIVPVKLDSTVMRGTALTVSAIESISDALRVP 175


>gi|255565015|ref|XP_002523500.1| abc transporter, putative [Ricinus communis]
 gi|223537207|gb|EEF38839.1| abc transporter, putative [Ricinus communis]
          Length = 229

 Score = 39.1 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 28/210 (13%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           ++ G NG GKTT +  L+     +  +++    D   S    Q K+  +  S      E 
Sbjct: 40  VLTGSNGSGKTTFLRMLAGFSKPSAGQILWNGHDVTESGVFHQYKLQLNWLSLKDAIKEK 99

Query: 175 GSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
            +    + +    + +    +  L +   GRL  +   M  +G+  R+           +
Sbjct: 100 FTVLDNVQWFEILEGKQGNSMRALELMGLGRLAKDKARMLSMGQRKRLQLARLLAIDRPI 159

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             + + +   +                 I+   +   +GG +    V   +P+       
Sbjct: 160 WLLDEPSVALDD--------EGVRLLEYIIA--EHRKKGGIVF---VATHLPI------- 199

Query: 294 GIND-----LEPFVAKDFSAVITGCLDYGE 318
            I D     L P   +  +  +   LD  +
Sbjct: 200 EIEDAMYLRLPPRFPRRMT--LVDMLDRAD 227


>gi|198284678|ref|YP_002220999.1| ABC transporter-like protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666647|ref|YP_002427352.1| ABC transporter, permease/ATP-binding protein [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198249199|gb|ACH84792.1| ABC transporter related [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518860|gb|ACK79446.1| ABC transporter, permease/ATP-binding protein [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 618

 Score = 39.1 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 73/184 (39%), Gaps = 29/184 (15%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDA-------GLKVMLAAGDTFR--SAAIDQLKIWADR 164
           + +VG +G GK+T++  L +            G  V     ++FR     + Q      R
Sbjct: 401 VAIVGPSGSGKSTLVSLLLRFFDVNEGRILVDGQDVRGLQQESFRQFIGVVSQDTSLLHR 460

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI-------LMAGIGK 217
           +  D V     +       +A ++A+A    + ++D+ GR+  ++        L  G  +
Sbjct: 461 SILDNVRYGRQNATREEVEDALRKARADAFVLDLVDSYGRVGLDAQVGERGVKLSGGQRQ 520

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
            I + +    +AP  +L + +AT+  +++ + E+ H            +D    G  +I 
Sbjct: 521 RIAIARVFLKNAP--ILILDEATSALDSVTEQEIQHE-----------LDALMAGRTVIA 567

Query: 278 IVVT 281
           I   
Sbjct: 568 IAHR 571


>gi|147767609|emb|CAN71249.1| hypothetical protein VITISV_030153 [Vitis vinifera]
          Length = 1728

 Score = 39.1 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 38  SRRLDD--GVREEL---EDLLIRSDIG--VAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
            +++DD     +++    ++L   +IG   + + ++++ L       +  V   L + ++
Sbjct: 184 GKKIDDVQTNLQDISKRREILGIKNIGEGTSTSTQMLQNLRRTTPRAEKHVIVGLNEEAK 243

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            + K L             R  VI +VG+ G+GKTT+  K+
Sbjct: 244 ELVKQLT--------KGDPRRRVISIVGMGGIGKTTLAKKI 276


>gi|134103380|ref|YP_001109041.1| Clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004401|ref|ZP_06562374.1| Clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916003|emb|CAM06116.1| clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
           2338]
          Length = 828

 Score = 39.1 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 21/145 (14%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K+ E L  +   ++      +  V+E + + L  +  P            L +G  GVGK
Sbjct: 527 KLEEALHERVVGQE----EAVTAVAEAVRRSLAGMGDP-----DRPVGSFLFLGPTGVGK 577

Query: 125 TTVIGK-LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
            T + K L+  +           GD  R    D  +     T +  V +  G      A 
Sbjct: 578 -TELAKALAGLL----------FGDEDRLVRFDMSEFQERHTVSRLVGAPPGYVGHEEAG 626

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNN 208
           +  ++ + +   VL+ D   + H +
Sbjct: 627 QLTERVRRQPYSVLLFDEIEKAHQD 651


>gi|271499168|ref|YP_003332193.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech586]
 gi|270342723|gb|ACZ75488.1| ATP-dependent metalloprotease FtsH [Dickeya dadantii Ech586]
          Length = 650

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|238882615|gb|EEQ46253.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 564

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 82/265 (30%), Gaps = 48/265 (18%)

Query: 60  VAVAQKIVEELLTKRYAK---DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
               +  +E + T+   +   ++ +      VSE   ++     +      S   H +L+
Sbjct: 89  PEAVEDDIETVKTQILDQLNGNLQIFSSTPSVSEKYSEIYSIFERTIKDKES---HSVLM 145

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VG    GKTT I K + K  +   K                     +  S     S    
Sbjct: 146 VGPRSSGKTT-IVKSALKELNGNYK--------------------GEFISIYLNSSVQTD 184

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D++AL   A +     K DV      G   ++  L     +     K+       ++L V
Sbjct: 185 DSSALREIARQLDINVKKDV-----GGYGSDSMELTNEKIEYANFEKKSINDTFSNILSV 239

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLI--MTKMDGTARGG---GLIPIVVTHKIPVYFLGV 291
           L +  G                  +I    K    +R      L+ I  +   P+  +G+
Sbjct: 240 LTSNKGDRD--------ERMPLVFVIDEFEKFTVDSRQTLLYNLLDISQSSATPLCVVGL 291

Query: 292 GEGI---NDLEPFVAKDFSAVITGC 313
              I     LE  V+  FS  +   
Sbjct: 292 TTKITTKEALEKRVSSRFSQRVISL 316


>gi|226505150|ref|NP_001149279.1| LOC100282901 [Zea mays]
 gi|195625980|gb|ACG34820.1| XPA-binding protein 1 [Zea mays]
          Length = 401

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 23/137 (16%)

Query: 90  ELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +   +  LS  P   +F  +P +I+V+G+ G GKTT++ +L      +  +  +   D
Sbjct: 38  EELADSIGSLSIGPGRTNFKKKPVIIIVIGMAGTGKTTLMHRLVCDTQASNKRGYVVNLD 97

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA------------------FKQAQ 190
                A+  L   A+    D V  +      +L                        + +
Sbjct: 98  ----PAVMTLPFGANIDIRDTVRYKDVMKEYSLGPNGGILTSLNLFATKFDEVVSVIERR 153

Query: 191 AKKVDVLIIDTAGRLHN 207
           A+++D +++DT G++  
Sbjct: 154 AEQLDYVLVDTPGQIEI 170


>gi|172038833|ref|YP_001805334.1| WD repeat-containing protein [Cyanothece sp. ATCC 51142]
 gi|171700287|gb|ACB53268.1| WD-repeat protein [Cyanothece sp. ATCC 51142]
          Length = 1169

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
           KL + ++ ++  +      +  LE    ++D+   V  K  +    + + + +  +    
Sbjct: 60  KLWKKLSQVLGEKVSKTNFKAALERK-SKTDLNQQVTLKFNKH---QDWGEAIETEYFWG 115

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            +SEL        +K   W       +I ++G+ GVGK+T+  KL+K
Sbjct: 116 RISEL--------NKLKTWLLKDNCKLISLLGLGGVGKSTLAIKLAK 154


>gi|86147607|ref|ZP_01065917.1| adenylylsulfate kinase [Vibrio sp. MED222]
 gi|85834646|gb|EAQ52794.1| adenylylsulfate kinase [Vibrio sp. MED222]
          Length = 206

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 99  LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           + K F  D  S +P V+   G++G GK+TV G L  +++  G    L  GD  R  
Sbjct: 19  IDKTFRADLKSQKPAVLWFTGLSGSGKSTVAGALENRLAQLGYHTYLLDGDNVRHG 74


>gi|326796893|ref|YP_004314713.1| type VI secretion ATPase, ClpV1 family [Marinomonas mediterranea
           MMB-1]
 gi|326547657|gb|ADZ92877.1| type VI secretion ATPase, ClpV1 family [Marinomonas mediterranea
           MMB-1]
          Length = 974

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 12/97 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVC 171
           V L+ G +GVGKT    K++K +  +   ++      ++ A  + QLK            
Sbjct: 635 VFLLAGPSGVGKTETAKKIAKHLFGSERSLITINMSEYQEAHTVSQLKGSP--------P 686

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             +G     L  EA +Q   K   V+++D   + H +
Sbjct: 687 GYVGYGQGGLLTEAVRQ---KPYSVVLLDEVEKAHVD 720


>gi|312793739|ref|YP_004026662.1| ABC transporter-like protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180879|gb|ADQ41049.1| ABC transporter related protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 597

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM----PLSKPFNWDFS---HR 110
           + +A  ++I E L T+   +D      L  +   I    +       KP   D S     
Sbjct: 322 VAMASTERIFEILDTQPDVQDTKDAYDLPPIRGEITFENVSFSYDEEKPVLKDVSFTIKA 381

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
              I +VG  G GKTT+I  +++       ++++   D
Sbjct: 382 GETIALVGETGAGKTTIINLIARFYDPQKGRILIDGHD 419


>gi|297181796|gb|ADI17976.1| putative periplasmic protein kinase argk and related GTPases of g3e
           family [uncultured Chloroflexi bacterium HF0200_09I09]
          Length = 318

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ---- 157
           +  + R   + + G  GVGK+T++G+L++ + + G  V + A D        AI      
Sbjct: 40  YSETGRAATVGITGSAGVGKSTLVGRLARALRELGRTVGIVAVDPSSPFSHGAILGDRIR 99

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEA---FKQAQAKKVDVLIIDTAGRLHNNSI 210
           ++     +           +   LA  A        A   DV++++T G   +   
Sbjct: 100 MQDLTSDSGVFLRSMASRGNLGGLAETASGVVDVMDAAGYDVVLVETVGAGQDEVE 155


>gi|224073780|ref|XP_002304169.1| predicted protein [Populus trichocarpa]
 gi|222841601|gb|EEE79148.1| predicted protein [Populus trichocarpa]
          Length = 328

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 21/59 (35%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
             F       P VI      G GKTT++  L       G K  + + D F   A  Q K
Sbjct: 95  TQFKDSEDIPPLVIGFSAPQGCGKTTLVFALDYLFKVTGRKSAMLSIDDFYLTAEGQAK 153


>gi|182412228|ref|YP_001817294.1| flagellar GTP-binding protein-like protein [Opitutus terrae PB90-1]
 gi|177839442|gb|ACB73694.1| Flagellar GTP-binding protein-like protein [Opitutus terrae PB90-1]
          Length = 369

 Score = 39.1 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 77/252 (30%), Gaps = 31/252 (12%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-----HVILVVGVNGVGK 124
           L      +  S           +H+ L   S+        RP          +G  GVG+
Sbjct: 136 LTETALTRLQSGAHWPEIARLPLHRALAETSRLLRERAEARPGRAPLSRAAFLGTAGVGR 195

Query: 125 TTVIGKLSKKMSDAGLKV----MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           TT    L K +S    +      +   +  R   +  L ++A+                A
Sbjct: 196 TTA---LCKWLSTEVFRRARIGHVVTIEFDRPNPLGPLPVFAEALGVPL-AHFPCETQPA 251

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +             D+  I +  R  +N  L             LD  A    + VL+A 
Sbjct: 252 VPGGFV------YFDLPSI-SPRRASDNKALAE----------WLDREAIEERVLVLNAA 294

Query: 241 TGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGIN-DLE 299
             + A+R         G T L+ T +D   + G L   +   ++   FL  G  +  D E
Sbjct: 295 YDRAAIRAAYAAGRDLGATHLVFTHLDEVPQWGKLWDYLFDAELEPLFLATGPSLTGDCE 354

Query: 300 PFVAKDFSAVIT 311
             V+   +    
Sbjct: 355 EDVSGAIARRTL 366


>gi|327271992|ref|XP_003220770.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           3-like [Anolis carolinensis]
          Length = 518

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+     +    
Sbjct: 31  QLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKHYSSY---- 86

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             DF   +           A    +  KV
Sbjct: 87  --DFFRPDNEEAMKVRKQCALAALRDVKV 113


>gi|316966828|gb|EFV51360.1| putative EH domain-containing protein 3 [Trichinella spiralis]
          Length = 523

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 60/215 (27%), Gaps = 36/215 (16%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                   P +ILV+G  GVGKTT I    + + +     M    D       +   I A
Sbjct: 86  LTDAEFESPPMILVIGQGGVGKTTTI----RYLMNDTYPGMAIGPD----GTTEMFTIIA 137

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL--------------IIDTAGRLHNN 208
                  V +E         Y    +  ++ V+                 +DT G     
Sbjct: 138 HGDYPLVVSAETLLHDQKFPYSGISRLGSEFVNKCVTAFTPCPLLKHINFVDTPGIAAGR 197

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT---GQNALRQVEMFHAVAGTTGLIMTK 265
                G     +            +L + DA T        R +           +I+ K
Sbjct: 198 GA-EKGSDYDFQAALAFFAEKADLILFLFDAFTMNFSNEMKRVIFSMQQYEEKLFIILNK 256

Query: 266 MDGT--ARGGGL-IPIVVTHK-------IPVYFLG 290
            D    A  G +   ++           IP  F+G
Sbjct: 257 ADKVDLAEVGNVHCSLIWQLGHIMKRREIPPVFIG 291


>gi|240136958|ref|YP_002961427.1| methylmalonyl-CoA mutase accessory protein [Methylobacterium
           extorquens AM1]
 gi|240006924|gb|ACS38150.1| methylmalonyl-CoA mutase accessory protein [Methylobacterium
           extorquens AM1]
          Length = 329

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           + L + L+  D   A+A+ I   L   R A           V +LI  +L    +     
Sbjct: 9   DTLRERLLAGD-RAALARAIT--LAESRRA------DHRAAVRDLIDAVLPQTGRAIRVG 59

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAI-----DQLK 159
            +         GV GVGK+T I  L   ++ AG KV + A D  + R+         ++ 
Sbjct: 60  IT---------GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA 110

Query: 160 IWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             A   +A    S        +A    E     +A   DV++++T G   + + 
Sbjct: 111 RLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA 164


>gi|224438044|ref|ZP_03658983.1| putative ATP/GTP-binding protein [Helicobacter cinaedi CCUG 18818]
          Length = 366

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 99/283 (34%), Gaps = 40/283 (14%)

Query: 24  TSLKLKEGITDI----ISSRRLDDGVREELEDLLIRSDIGVAV-------AQKIVEELLT 72
           T  ++ + + ++     S   +  G  +E++     SD GV +       AQ++++ L  
Sbjct: 3   TQEQITQNLKNVIYPNFSKDIVSFGFLKEVK----VSDEGVYIRIDIPSSAQEVIDTLKI 58

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV--GVNGVGKTTVIGK 130
           +   +  S+ +      E+      P  +P   + +      ++V  G  GVGK+T    
Sbjct: 59  EVQKQLDSLLQGQNLNLEINPPKPAPKPQPKTKNLAPHIKHFVMVSSGKGGVGKSTSSVN 118

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+  ++  G +V L   D +       L + A +       +E       L     +   
Sbjct: 119 LAIALAQQGKRVGLLDADIYGPNIPRMLGLNATKAEV----NEAQKKLIPLKAFGVEMMS 174

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
                 ++ D          L+     ++R ++++      S L VL             
Sbjct: 175 MG----VLYD------EGQSLIWRGPMIMRAIEQMLTDVLWSELDVLVIDMPPGTGDAQL 224

Query: 251 MFHAVAGTT-GLIMT-----KMDGTARGGGLIPIVVTHKIPVY 287
                   + G+I+T      +D +AR    + +    K+P+ 
Sbjct: 225 TLAQSVPVSAGVIVTTPQKVSLDDSAR---SLDMFDKLKVPIA 264


>gi|146296233|ref|YP_001180004.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409809|gb|ABP66813.1| membrane protease FtsH catalytic subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 615

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 24/184 (13%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L  K    DV+      +  + +   L    K      +  P  IL+VG  G GKT 
Sbjct: 157 IQDLKKKVTFADVAGADEEKEELKEVIDFLKNPRKYIELG-ARIPKGILLVGPPGTGKT- 214

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
               L+K ++                A +    I        FV                
Sbjct: 215 ---LLAKAVAGE--------------AGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKR 257

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                  +D   ID  GR     +          + ++L  +D    +  + V+ AT   
Sbjct: 258 NAPCVVFIDE--IDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFGTNEGIIVMAATNRP 315

Query: 244 NALR 247
           + L 
Sbjct: 316 DILD 319


>gi|146313246|ref|YP_001178320.1| ATP-dependent metalloprotease [Enterobacter sp. 638]
 gi|145320122|gb|ABP62269.1| membrane protease FtsH catalytic subunit [Enterobacter sp. 638]
          Length = 644

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      D    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 153 DVAGCDEAKDEVAELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 208 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 251

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|19338610|gb|AAL86727.1|AF416776_5 GTPase/ATPase [Methylobacterium extorquens AM1]
          Length = 329

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           + L + L+  D   A+A+ I   L   R A           V +LI  +L    +     
Sbjct: 9   DTLRERLLAGD-RAALARAIT--LAESRRA------DHRAAVRDLIDAVLPQTGRAIRVG 59

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAI-----DQLK 159
            +         GV GVGK+T I  L   ++ AG KV + A D  + R+         ++ 
Sbjct: 60  IT---------GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA 110

Query: 160 IWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             A   +A    S        +A    E     +A   DV++++T G   + + 
Sbjct: 111 RLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA 164


>gi|15896449|ref|NP_349798.1| ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum ATCC
           824]
 gi|15026273|gb|AAK81138.1|AE007816_2 ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum ATCC
           824]
 gi|325510607|gb|ADZ22243.1| ATP-dependent Zn protease, FTSH [Clostridium acetobutylicum EA
           2018]
          Length = 602

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           ++L  K   KDV+         E I   L    +      +  P  +L+VG  G GKT  
Sbjct: 151 DDLKQKVTFKDVAGADEEKGELEEIVDFLKQPKRYIEMG-ARIPKGVLLVGPPGTGKTL- 208

Query: 128 IGK 130
           + K
Sbjct: 209 LAK 211


>gi|76802726|ref|YP_330821.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
 gi|76558591|emb|CAI50183.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
           pharaonis DSM 2160]
          Length = 702

 Score = 39.1 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 28/168 (16%)

Query: 85  LYDVSELIHKMLM-PLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           L +  E + +M+  PLS+P  F       P  +L+ G  G GKT  I K           
Sbjct: 194 LDEELEQVREMIELPLSEPELFRKLGIEPPSGVLLYGPPGTGKTL-IAK----------- 241

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                      A  +++    +      + S+   ++     E F++A   +  V+ ID 
Sbjct: 242 -----------AVANEVDAHFEVIDGPEIVSKYKGESEERLRETFERAVDNQPAVVFIDE 290

Query: 202 AGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              +    +         + ++L  +D    H  L V+ AT   +A+ 
Sbjct: 291 IDSIAGTRDEDADMENRVVAQLLTLMDGLENHGRLIVIGATNRVDAID 338


>gi|308172683|ref|YP_003919388.1| ABC transporter ATP-binding protein [Bacillus amyloliquefaciens DSM
           7]
 gi|307605547|emb|CBI41918.1| putative ABC transporter (ATP-binding protein) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328552452|gb|AEB22944.1| ABC transporter (ATP-binding protein) [Bacillus amyloliquefaciens
           TA208]
 gi|328910797|gb|AEB62393.1| putative ABC transporter (ATP-binding protein) [Bacillus
           amyloliquefaciens LL3]
          Length = 605

 Score = 39.1 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I  VG  G GKTTV   +++       K+++   D
Sbjct: 395 IAFVGPTGAGKTTVTSLIARFYEPNEGKILIDGTD 429


>gi|158430325|pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
 gi|158430326|pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
          Length = 337

 Score = 39.1 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           + L + L+  D   A+A+ I   L   R A           V +LI  +L    +     
Sbjct: 9   DTLRERLLAGD-RAALARAIT--LAESRRA------DHRAAVRDLIDAVLPQTGRAIRVG 59

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAI-----DQLK 159
            +         GV GVGK+T I  L   ++ AG KV + A D  + R+         ++ 
Sbjct: 60  IT---------GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA 110

Query: 160 IWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             A   +A    S        +A    E     +A   DV++++T G   + + 
Sbjct: 111 RLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA 164


>gi|119485428|ref|ZP_01619756.1| hypothetical protein L8106_09811 [Lyngbya sp. PCC 8106]
 gi|119457184|gb|EAW38310.1| hypothetical protein L8106_09811 [Lyngbya sp. PCC 8106]
          Length = 207

 Score = 39.1 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 64/177 (36%), Gaps = 25/177 (14%)

Query: 114 ILVV--GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           ILV+  G  GVGKTT    L+  +S      +L   D       +    W  R    F  
Sbjct: 4   ILVITNGKGGVGKTTTAVNLAAILS-KRFSTLLVDAD-----PQNSAGWWVKRGEMPFEL 57

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S           +  K      VD+++IDT   L ++S+L A    +      + P    
Sbjct: 58  SCETRPPLLQQLKQIK-----NVDLVVIDTPPALQSSSLLTA----IAIADFLVLPSQAA 108

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIV--VTHKIPV 286
            +  V    T ++ +   ++ + V       +TK+D  + G  L          IPV
Sbjct: 109 PMDLVALIETVRHTIAPAKVAYRVL------LTKVDPRSLGDALEAQKSLQETGIPV 159


>gi|30424534|gb|AAO31598.1| ArsA [Shewanella sp. ANA-3]
          Length = 588

 Score = 39.1 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ ++++ GL V L   D    AA  +  +     +      +
Sbjct: 335 IMLMGKGGVGKTTLAAAIAVRLAELGLDVHLTTSD---PAAHLEHTLHGQLANLQVSRID 391

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                     +       +      +D  G+      L +   + I V + 
Sbjct: 392 PVEVTTRYREQVLATKGKE------LDAQGKALLEEDLRSPCTEEIAVFQA 436


>gi|8118102|gb|AAF72892.1|AF228510_1 putative DEAH-box RNA helicase [Trypanosoma cruzi]
          Length = 548

 Score = 39.1 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 65  KIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             VE+   ++  ++  V++Q     + E    + +  S+    +   +  V+++VG  G 
Sbjct: 137 DFVEDKTEEQIKQERTVAIQEQHRRLQEQRRSLPIYHSREALLEIIRKNTVVIIVGETGS 196

Query: 123 GKTT 126
           GKTT
Sbjct: 197 GKTT 200


>gi|121605076|ref|YP_982405.1| ATP-dependent helicase HrpA [Polaromonas naphthalenivorans CJ2]
 gi|120594045|gb|ABM37484.1| ATP-dependent helicase HrpA [Polaromonas naphthalenivorans CJ2]
          Length = 1306

 Score = 39.1 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI+V G  G GKTT + K++  +    L      G   R     Q +  A  + A  + 
Sbjct: 33  QVIIVCGETGSGKTTQLPKIALALGRGKLNYPPGQG---RMIGHTQPRRIAASSVAKRIA 89

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLDPHA 229
            E+ +    +     +       D L  D + +L  + IL+A      ++R    +    
Sbjct: 90  EELKTPLGDVVGYKVR-----FQDRLSRDASVKLMTDGILLAETQTDPLLRAYDTIIIDE 144

Query: 230 PHSVLQVLDATTGQ 243
            H     +D   G 
Sbjct: 145 AHERSLNIDFLLGY 158


>gi|332289023|ref|YP_004419875.1| protein disaggregation chaperone [Gallibacterium anatis UMN179]
 gi|330431919|gb|AEC16978.1| protein disaggregation chaperone [Gallibacterium anatis UMN179]
          Length = 857

 Score = 39.1 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 66/164 (40%), Gaps = 14/164 (8%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNW 105
           EE+ ++L R+  G+ VA K++E    K    +  + + +   +E +  +   + +     
Sbjct: 534 EEIAEVLSRA-TGIPVA-KMMEGEKEKLLRMEEELHKRVIGQNEAVEAVANAIRRSRAGL 591

Query: 106 DFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              +RP    L +G  GVGKT +   L+  + D+   ++            + ++  +  
Sbjct: 592 SDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAMIRIDM-------SEFMEKHSVS 644

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                    +G +      EA ++   +   V+++D   + H +
Sbjct: 645 RLVGAPPGYVGYEEGGYLTEAVRR---RPYSVVLLDEVEKAHRD 685


>gi|322411578|gb|EFY02486.1| ABC transporter, ATP-binding/permease protein [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 590

 Score = 39.1 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 11/103 (10%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
            E +  +L  +D  + V  ++ E+L  +     V                  PL K F  
Sbjct: 321 LERIFAVLDEADDAMLVTDQLDEDLTGQVSFNHVDFSYQAD----------KPLIKEFTL 370

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           D +    +I +VG  G GKTT+I  L +        + +   D
Sbjct: 371 DVNPG-EMIAIVGPTGAGKTTLINLLMRFYDVNKGSITVDGHD 412


>gi|304390408|ref|ZP_07372361.1| ABC superfamily ATP binding cassette transporter, ABC/membrane
           protein [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326164|gb|EFL93409.1| ABC superfamily ATP binding cassette transporter, ABC/membrane
           protein [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 604

 Score = 39.1 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 16/165 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA---------AGDTFR-SAAIDQLKIW 161
            V  ++G +G GKTT + KL+ +  D     +L            D +R    + Q    
Sbjct: 388 TVTALMGPSGAGKTT-LAKLAARFLDPDTGTVLIGGVNLKDLSRTDLYRHLGFVLQDAQL 446

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKM 218
              +  D +              A +QAQ    D ++    G       +  L  G  + 
Sbjct: 447 LRASIRDNISIGRHDADETEIINAARQAQI--HDEIMALPKGYDTVVGEDLKLSGGQAQR 504

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           I + + L   AP  +L    A        Q++           ++
Sbjct: 505 IAIARTLLLDAPILILDEAAAMVDPECEAQIQKAINHLMAGRTVL 549


>gi|295691335|ref|YP_003595028.1| capsular exopolysaccharide family [Caulobacter segnis ATCC 21756]
 gi|295433238|gb|ADG12410.1| capsular exopolysaccharide family [Caulobacter segnis ATCC 21756]
          Length = 739

 Score = 39.1 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 21/202 (10%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG-VNGVGKTTVIGKLSKKMSDAGLK 141
           + L   +E + K+   +             VI V   + G GKTT    L++ ++ +G K
Sbjct: 517 KPLSSFAESLRKLRASI---LFSKVGETVKVIAVTSSLPGEGKTTTTFSLARTLATSGAK 573

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA-------FKQAQAKKV 194
           V++   D  R +AI Q      +     V + + +   AL  +          ++     
Sbjct: 574 VIVVDCDL-RQSAISQFLKEPAQVGLLEVLNGVSTLEQALVSDESGAHILPLAKSAYTPR 632

Query: 195 DVLIIDTAGRLHNNSILMAGIGKM-------IRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           DVL      RL         I  +       I   + L PH    V+ V    T   A++
Sbjct: 633 DVLGSAAMHRLLQELRGRYEIVLLDTAPLLAIADTRILAPHTDAVVMLVRWKKTPVKAVQ 692

Query: 248 QVEMFHA--VAGTTGLIMTKMD 267
                     A   G+ +T+MD
Sbjct: 693 SALALLQGTRAFIAGVALTQMD 714


>gi|239503673|ref|ZP_04662983.1| HrpA-like helicase [Acinetobacter baumannii AB900]
          Length = 1285

 Score = 39.1 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 74/227 (32%), Gaps = 45/227 (19%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E+E L  +S     V Q+  E L      +D+ V +    + E I K             
Sbjct: 32  EIEKLFEQS--NAKVRQRF-ERLPKITLNQDLPVTQYADRLIEAIQKY------------ 76

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS- 166
                VI+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+    
Sbjct: 77  ----QVIIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGE 131

Query: 167 ---------ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSIL 211
                      F           L  +    A+          D +IID A     N   
Sbjct: 132 KLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYDTIIIDEAHERSLNIDF 191

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           + G       LK+L P  P   + V  AT     + +   +   A  
Sbjct: 192 IMGY------LKQLLPKRPDLKVIVTSATL---DVNRFSNYFNNAPI 229


>gi|218710703|ref|YP_002418324.1| adenylylsulfate kinase [Vibrio splendidus LGP32]
 gi|218323722|emb|CAV20071.1| Adenylylsulfate kinase [Vibrio splendidus LGP32]
          Length = 206

 Score = 39.1 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 99  LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           + K F  D  S +P V+   G++G GK+TV G L  +++  G    L  GD  R  
Sbjct: 19  IDKTFRADLKSQKPAVLWFTGLSGSGKSTVAGALENRLAQLGYHTYLLDGDNVRHG 74


>gi|117920786|ref|YP_869978.1| arsenite-activated ATPase ArsA [Shewanella sp. ANA-3]
 gi|117613118|gb|ABK48572.1| arsenite-activated ATPase ArsA [Shewanella sp. ANA-3]
          Length = 588

 Score = 39.1 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ ++++ GL V L   D    AA  +  +     +      +
Sbjct: 335 IMLMGKGGVGKTTLAAAIAVRLAELGLDVHLTTSD---PAAHLEHTLHGQLANLQVSRID 391

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                     +       +      +D  G+      L +   + I V + 
Sbjct: 392 PVEVTTRYREQVLATKGKE------LDAQGKALLEEDLRSPCTEEIAVFQA 436


>gi|325859754|ref|ZP_08172884.1| phosphoribulokinase/uridine kinase family protein [Prevotella
           denticola CRIS 18C-A]
 gi|325482680|gb|EGC85683.1| phosphoribulokinase/uridine kinase family protein [Prevotella
           denticola CRIS 18C-A]
          Length = 555

 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 11/121 (9%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
             + ++I   ++ +  +E      I   +G+       E +              L +VS
Sbjct: 220 SRLGELIRQDKMFEVFKEHHRWQGI---LGIKTVGDFNEAVKK-------GFSTDLINVS 269

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           E + +  +               V+L+ G +  GKTT   +LS ++  +G+K +  + D 
Sbjct: 270 EALQEKKISQIAD-TIAGRKETKVVLIAGPSSSGKTTFCKRLSVQLLASGVKPVQISLDD 328

Query: 150 F 150
           +
Sbjct: 329 Y 329


>gi|332716641|ref|YP_004444107.1| putative replication protein A [Agrobacterium sp. H13-3]
 gi|325063326|gb|ADY67016.1| putative replication protein A [Agrobacterium sp. H13-3]
          Length = 404

 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 58/182 (31%), Gaps = 28/182 (15%)

Query: 90  ELIHKMLMPLSKPFNWDFSHR-----PHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVM 143
           + I K L   ++       HR       VI V+    G GKTT    L++ ++  G    
Sbjct: 93  DEIRKFLDQGARGTRRYLPHRRDGEELQVIAVMNFKGGSGKTTTSAHLAQYLALRG---- 148

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVL---I 198
                 +R  AID L   A  ++      E+        Y A +    ++   +++    
Sbjct: 149 ------YRVLAID-LDPQASLSALFGHQPEMDVGPNETLYGAIRYDDERRPIAEIVRGTY 201

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           I     +  N  LM       R L R  P      L          A+ Q   F+ V   
Sbjct: 202 IPNLHIVPGNLELMEFEHDTPRALMRRAPG---DTLF---FARIGQAIAQARNFYDVVVI 255

Query: 259 TG 260
             
Sbjct: 256 DC 257


>gi|311105873|ref|YP_003978726.1| ABC transporter [Achromobacter xylosoxidans A8]
 gi|310760562|gb|ADP16011.1| ABC transporter family protein 40 [Achromobacter xylosoxidans A8]
          Length = 251

 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-TFRS 152
           +VG NG GKTT+ G LS  +      V  A  D T R 
Sbjct: 36  LVGPNGAGKTTLFGLLSGFLKPGSGSVHFAGTDITGRP 73


>gi|308189107|ref|YP_003933238.1| cell division protein ftsH [Pantoea vagans C9-1]
 gi|308059617|gb|ADO11789.1| cell division protein ftsH [Pantoea vagans C9-1]
          Length = 644

 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      D    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 156 DVAGCDEAKDEVAELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 210

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 211 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 254

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 255 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|254558811|ref|YP_003065906.1| methylmalonyl-CoA mutase accessory protein [Methylobacterium
           extorquens DM4]
 gi|254266089|emb|CAX21841.1| methylmalonyl-CoA mutase accessory protein [Methylobacterium
           extorquens DM4]
          Length = 329

 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           + L + L+  D   A+A+ I   L   R A           V +LI  +L    +     
Sbjct: 9   DTLRERLLAGD-RAALARAIT--LAESRRA------DHRAAVRDLIDAVLPQTGRAIRVG 59

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAI-----DQLK 159
            +         GV GVGK+T I  L   ++ AG KV + A D  + R+         ++ 
Sbjct: 60  IT---------GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA 110

Query: 160 IWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             A   +A    S        +A    E     +A   DV++++T G   + + 
Sbjct: 111 RLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA 164


>gi|251791041|ref|YP_003005762.1| ATP-dependent metalloprotease FtsH [Dickeya zeae Ech1591]
 gi|247539662|gb|ACT08283.1| ATP-dependent metalloprotease FtsH [Dickeya zeae Ech1591]
          Length = 650

 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|225019935|ref|ZP_03709127.1| hypothetical protein CLOSTMETH_03889 [Clostridium methylpentosum
           DSM 5476]
 gi|224947299|gb|EEG28508.1| hypothetical protein CLOSTMETH_03889 [Clostridium methylpentosum
           DSM 5476]
          Length = 356

 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 56  SDIGVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-SKPFNWDFSHRP 111
           +D+     ++ VE    +     A D    + L  V  LI ++L+ L  K  +   S R 
Sbjct: 128 ADLNF--TRRWVEYFQSVGIAALAIDCQTGKNLKQVQPLIRQVLVELIQKRASKGMSGRI 185

Query: 112 HVILVVGVNGVGKTTVIGKLS 132
              +VVG+  VGK+T I K++
Sbjct: 186 VRAMVVGIPNVGKSTFINKMA 206


>gi|297604103|ref|NP_001054998.2| Os05g0240200 [Oryza sativa Japonica Group]
 gi|53980832|gb|AAV24753.1| putative RGH1A [Oryza sativa Japonica Group]
 gi|215704662|dbj|BAG94290.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255676159|dbj|BAF16912.2| Os05g0240200 [Oryza sativa Japonica Group]
          Length = 1315

 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 29/146 (19%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG-----VAV--AQKIVEELLTK 73
                 KL +      + R++ +         LI+ DI      V     +  V+ ++ K
Sbjct: 23  LLRLRKKLGKLFKKSKARRKISN---------LIQ-DINKKFEQVKARHVKYTVDSVVLK 72

Query: 74  RYAK---DVSVQRVLYDVSELI------HKMLMPLSKPFNWDFSHRP-HVILVVGVNGVG 123
             A    D  +Q +    +EL+        ++  LS   + D S +   VI VVG  G+G
Sbjct: 73  SLAATTIDPRLQNLYKRATELVGIDGPRDDLINKLSLGGDVDVSDKKMKVISVVGFGGLG 132

Query: 124 KTTVIGKLSK-KMSDAGLKVMLAAGD 148
           KTT + K                  D
Sbjct: 133 KTT-LAKAVYDHFKPHFKCRASVPVD 157


>gi|15806080|ref|NP_294784.1| arginine/ornithine transport system ATPase [Deinococcus radiodurans
           R1]
 gi|6458791|gb|AAF10633.1|AE001957_1 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 293

 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 82/258 (31%), Gaps = 61/258 (23%)

Query: 73  KRYAKDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +  AK +++        E     L+ ++L    +      +         GV GVGK+T+
Sbjct: 28  RALAKAITLVESRRPAHEQEAQALLTELLPHAGRSLRVGLT---------GVPGVGKSTL 78

Query: 128 IGKLSKKMSDAGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSD 177
           I  L   ++DAG +V + A D  + R+          + +L +                 
Sbjct: 79  IEALGLFLADAGHRVAVLAVDPSSQRTGGSIMGDKTRMPRLTVHEGAFIRPSPSGGTLGG 138

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A    E     +A   DVL+I+T G   + +                   A  + L VL
Sbjct: 139 VARRTRETITLCEAAGYDVLLIETVGVGQSETQ-----------------VAGMTDLFVL 181

Query: 238 DATTG-QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG------ 290
               G  + L+ ++           ++ K D   R    I      +  +  L       
Sbjct: 182 LTLHGAGDELQGIKRGIMELA-DLCVVNKADTNPR--AAIRAQTELRSALTLLTPHDAPW 238

Query: 291 ----------VGEGINDL 298
                      GEGI +L
Sbjct: 239 RPAALRASAVTGEGIPEL 256


>gi|320100638|ref|YP_004176230.1| hypothetical protein Desmu_0430 [Desulfurococcus mucosus DSM 2162]
 gi|319752990|gb|ADV64748.1| hypothetical protein Desmu_0430 [Desulfurococcus mucosus DSM 2162]
          Length = 221

 Score = 39.1 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           VI+  G+ G GKTT I  L+ ++   GL+V   
Sbjct: 4   VIVFAGLEGAGKTTHIRLLAIRLKKRGLRVRTT 36


>gi|149922603|ref|ZP_01911032.1| ClpA/B family protein [Plesiocystis pacifica SIR-1]
 gi|149816559|gb|EDM76055.1| ClpA/B family protein [Plesiocystis pacifica SIR-1]
          Length = 806

 Score = 39.1 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 21/150 (14%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV-VGVNGV 122
           +++   L      +D +       ++                D   RP   L  VG  GV
Sbjct: 491 EQLAARLREGVVGQDKAAATAARVLARF----------KAGLDDPERPVGSLFFVGPTGV 540

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA-L 181
           GKT +  +L++ M     +++      +      Q ++ A     + +   +     + +
Sbjct: 541 GKTELAKQLARYMFGDADRMIRLDMSEYMLGGSAQ-RMLAVGPGVESLAERVRRQPLSLI 599

Query: 182 AYEAFKQAQAKKVDVL--------IIDTAG 203
             +  ++A  +  D+L        + D AG
Sbjct: 600 LLDEIEKAHPEVFDLLLAVLGEGRMTDAAG 629


>gi|115458290|ref|NP_001052745.1| Os04g0413000 [Oryza sativa Japonica Group]
 gi|38346323|emb|CAE02063.2| OJ000126_13.5 [Oryza sativa Japonica Group]
 gi|113564316|dbj|BAF14659.1| Os04g0413000 [Oryza sativa Japonica Group]
          Length = 682

 Score = 39.1 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 64  QKIVEELLTKRYA---KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            + + E+  K  A   K V      +DV+      + P+    N         I  VG +
Sbjct: 434 TRFIPEVRDKATAVHLKYVKGDINFHDVTFQYIDGMPPILDGVNLHIRSGET-IAFVGPS 492

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           G GKTT+   L +      +    A  +
Sbjct: 493 GGGKTTLAKLLLRLYQPQSVASWSATTE 520


>gi|268564296|ref|XP_002647135.1| Hypothetical protein CBG16432 [Caenorhabditis briggsae]
          Length = 406

 Score = 39.1 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 7/46 (15%)

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           ++L P   P     S +P +I++VG  G GK+T    ++K +++  
Sbjct: 235 QLLEPEDAPLK---SEKPEIIVMVGFPGSGKST----IAKWLAEQN 273


>gi|150017889|ref|YP_001310143.1| ABC transporter [Clostridium beijerinckii NCIMB 8052]
 gi|149904354|gb|ABR35187.1| ABC transporter related [Clostridium beijerinckii NCIMB 8052]
          Length = 517

 Score = 39.1 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 79/235 (33%), Gaps = 27/235 (11%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
             Q+   E L    +  K  ASTS + K     +    R+   +++E+    I+      
Sbjct: 262 KEQQNEIEKLEDYIRKNKARASTSKQAKSREKKLNKIERI--EIKKEI----IKPHFNFK 315

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             +                 + ++ +VS LI     PLSKP N     R   I V G NG
Sbjct: 316 TVK---------------MPESIILEVSNLIIGYNRPLSKPLNLKM-KRGQKIAVTGANG 359

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAA 180
           +GKTT++  L   +    +   +   +  +    +Q   W    S  + V SE       
Sbjct: 360 LGKTTLLKTLLGMLKP--INGEITLSEHRKIGYFEQEIAWNSTNSVLYDVWSEFPHLTQT 417

Query: 181 LAYEAFKQA--QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                  +     + +D  I   +G       L   I +   VL   +P     +
Sbjct: 418 EVRRELARCGLTRQHIDSPINILSGGEQAKVRLCKLINEYTNVLVLDEPTNHLDI 472


>gi|89894400|ref|YP_517887.1| carbon monoxide dehydrogenase maturation factor [Desulfitobacterium
           hafniense Y51]
 gi|219668824|ref|YP_002459259.1| cobyrinic acid ac-diamide synthase [Desulfitobacterium hafniense
           DCB-2]
 gi|89333848|dbj|BAE83443.1| carbon monoxide dehydrogenase maturation factor [Desulfitobacterium
           hafniense Y51]
 gi|219539084|gb|ACL20823.1| Cobyrinic acid ac-diamide synthase [Desulfitobacterium hafniense
           DCB-2]
          Length = 255

 Score = 39.1 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I + G  GVGKTT    L+  +S+ G++V+    D
Sbjct: 3   IAISGKGGVGKTTFAANLAHYLSEQGMRVLAVDAD 37


>gi|312876862|ref|ZP_07736839.1| ABC transporter related-protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796377|gb|EFR12729.1| ABC transporter related-protein [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 597

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM----PLSKPFNWDFS---HR 110
           + +A  ++I E L T+   +D      L  +   I    +       KP   D S     
Sbjct: 322 VAMASTERIFEILDTQPDVQDTKDAYDLPPIRGEITFENVSFSYDEEKPVLKDVSFTIKA 381

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
              I +VG  G GKTT+I  +++       ++++   D
Sbjct: 382 GETIALVGETGAGKTTIINLIARFYDPQKGRILIDGHD 419


>gi|309358214|emb|CAP34402.2| hypothetical protein CBG_16432 [Caenorhabditis briggsae AF16]
          Length = 407

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 7/46 (15%)

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           ++L P   P     S +P +I++VG  G GK+T    ++K +++  
Sbjct: 236 QLLEPEDAPLK---SEKPEIIVMVGFPGSGKST----IAKWLAEQN 274


>gi|304396341|ref|ZP_07378222.1| ATP-dependent metalloprotease FtsH [Pantoea sp. aB]
 gi|304355850|gb|EFM20216.1| ATP-dependent metalloprotease FtsH [Pantoea sp. aB]
          Length = 644

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      D    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 156 DVAGCDEAKDEVAELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 210

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 211 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 254

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 255 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|302871266|ref|YP_003839902.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574125|gb|ADL41916.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 616

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L  K    DV+      +  + +   L    K      +  P  IL+VG  G GKT 
Sbjct: 158 IQDLKKKVTFADVAGADEEKEELKEVIDFLKNPRKYIELG-ARIPKGILLVGPPGTGKTL 216

Query: 127 VIGK 130
            + K
Sbjct: 217 -LAK 219


>gi|291483265|dbj|BAI84340.1| hypothetical protein BSNT_01367 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 604

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I  VG  G GKTTV   L++       K+++   D
Sbjct: 395 IAFVGPTGAGKTTVTNLLARFYEPDEGKILIDGTD 429


>gi|21431812|sp|P36286|POLG_SMSV1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein
           p16; Contains: RecName: Full=Protein p32; Contains:
           RecName: Full=NTPase; AltName: Full=p39; Contains:
           RecName: Full=Protein p30; Contains: RecName: Full=Viral
           genome-linked protein; AltName: Full=VPg; AltName:
           Full=p13; Contains: RecName: Full=Protease-polymerase
           p76; Short=Pro-Pol
 gi|10141005|gb|AAA96501.2| non-structural polyprotein [San Miguel sea lion virus]
          Length = 1879

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 17/107 (15%)

Query: 54  IRSDIGVAVA---QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS---------K 101
           I +DI        Q++ E L  +  +  ++     Y    ++  ++  L          K
Sbjct: 519 ITADI--DAVINLQRLAETLREEVKSHTLNPLMQPYTP--ILRNLMSALDNVISCCTRRK 574

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                 +    VIL  G  G GKTT    L+K++S     ++    D
Sbjct: 575 AIATKRTAPVAVIL-TGPPGCGKTTAAFALAKRLSQQKPSIISLDVD 620


>gi|146294909|ref|YP_001185333.1| arsenite-activated ATPase ArsA [Shewanella putrefaciens CN-32]
 gi|145566599|gb|ABP77534.1| arsenite-activated ATPase ArsA [Shewanella putrefaciens CN-32]
          Length = 588

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ ++++ GL V L   D    AA  +  +     +      +
Sbjct: 335 IMLMGKGGVGKTTLAAAIAVRLAELGLDVHLTTSD---PAAHLEHTLHGQLANLQVSRID 391

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                     +       +      +D  G+      L +   + I V + 
Sbjct: 392 PVEVTTRYREQVLATKGKE------LDAQGKALLEEDLRSPCTEEIAVFQA 436


>gi|304437097|ref|ZP_07397060.1| cell division protein FtsH [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370048|gb|EFM23710.1| cell division protein FtsH [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 664

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 70/220 (31%), Gaps = 27/220 (12%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K    DV+         E + + L    K FN   +  P  +L+ G  G GKT     
Sbjct: 154 KKKVTFADVAGADEAKQELEEVVEFLKTPDK-FNELGARIPKGVLLFGPPGTGKT----L 208

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K ++                 A  Q    +     +       S    L  +A K A 
Sbjct: 209 LAKAVAGE---------------AGVQFFTISGSDFVEMFVGVGASRVRDLFEQAKKAAP 253

Query: 191 AKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +  ID  GR     +          + ++L  +D  A +  + ++ AT   + L 
Sbjct: 254 CIVF-IDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFASNEGIIIIAATNRPDVLD 312

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
              +         +++ K D   RG   I  V T   PV 
Sbjct: 313 PALLRPGRFD-RQIVVDKPD--VRGREAILKVHTKGKPVA 349


>gi|255322929|ref|ZP_05364069.1| cytochrome c oxidase, heme b and copper-binding subunit,
           membrane-bound [Campylobacter showae RM3277]
 gi|255300041|gb|EET79318.1| cytochrome c oxidase, heme b and copper-binding subunit,
           membrane-bound [Campylobacter showae RM3277]
          Length = 366

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 79/250 (31%), Gaps = 38/250 (15%)

Query: 50  EDLLIRSDIGVAVAQ---KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E +LI     V +      +  EL T       S + V+  +   I +         N  
Sbjct: 36  EKILIE----VEIVSSNPDVANELRTDIKRVMGSNECVINIIQPKIPEEKSNSQSGKNIA 91

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              +  V++  G  GVGK+T    L+  M+  G KV +   D +       L     +  
Sbjct: 92  PQIKNFVMVSSGKGGVGKSTTTLNLAISMAKLGKKVGILDADIYGPNIPRMLGEVGTQPQ 151

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRL 225
                  +G+    +     +             + G L      L+     +++ +++L
Sbjct: 152 V------VGNKLKPILTHGVEMM-----------SMGVLMEEGMSLIWRGSMIMKAIEQL 194

Query: 226 DPHAPHSVLQV----LDATTGQNALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIP 277
                 S L V    +   TG   L   +     AG    + T     +D + R    + 
Sbjct: 195 LKDVFWSELDVLFLDMPPGTGDAQLTLAQSVPVTAGV--CVTTPQVVALDDSKR---ALD 249

Query: 278 IVVTHKIPVY 287
           +     IP+ 
Sbjct: 250 MFEKLHIPIA 259


>gi|311741653|ref|ZP_07715476.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311303317|gb|EFQ79397.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 208

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK----IWADRTS 166
           P +  +    G GKTT    L+   +  G  V +   D  +  A + ++     + +  +
Sbjct: 2   PVISCLNAKGGTGKTTSAINLAAVAAYRGYTVHVLDADAEQGTASEWIEYANDAFEENPN 61

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           A  V  E+ +    +     K+      D++IID     H+ S L+      +
Sbjct: 62  APHVDVEVEAVNRGILARKVKKYSN---DLVIIDGPPSNHSMSELIIENSDFV 111


>gi|167589262|ref|ZP_02381650.1| Chaperonin clpA/B/, ATPase [Burkholderia ubonensis Bu]
          Length = 893

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 16/148 (10%)

Query: 106 DFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWAD 163
           D +    V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK    
Sbjct: 619 DPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMVTINMSEYQEAHSVSGLK---- 673

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   S  G           +  +     V+++D   + H + + M         + 
Sbjct: 674 -------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGAMD 726

Query: 224 RLDPHAPH--SVLQVLDATTGQNALRQV 249
             +       + L +L +  G +A+ Q 
Sbjct: 727 DAEGREIDFRNTLIILTSNVGSSAVMQA 754


>gi|160945729|ref|ZP_02092955.1| hypothetical protein FAEPRAM212_03261 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443460|gb|EDP20465.1| hypothetical protein FAEPRAM212_03261 [Faecalibacterium prausnitzii
           M21/2]
          Length = 312

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID------QLKIWADR 164
             V L+ G  G GKTT + +  + +   G KV +   D     A++      Q ++    
Sbjct: 2   VQVDLITGFLGAGKTTFLRRYVRYLVQQGHKVCILENDF---GAVNVDAMLVQ-EVLGPG 57

Query: 165 TSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
              + +                      +  D ++++ +G    + 
Sbjct: 58  CDVETISGGCDCDTHQRRMRTKLIAMAMRGFDRVVVEPSGIFDVDE 103


>gi|83648151|ref|YP_436586.1| chaperone activity ATPase ATP-binding subunit [Hahella chejuensis
           KCTC 2396]
 gi|83636194|gb|ABC32161.1| ATPase with chaperone activity, ATP-binding subunit [Hahella
           chejuensis KCTC 2396]
          Length = 754

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 14/139 (10%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           Q +++   T+   +D S+   L  V ++    L    KP           +L  G  GVG
Sbjct: 459 QALLDYFKTRIIGQD-SILEQLCRVIQIFKAGLNDPQKPI--------ATLLFAGPTGVG 509

Query: 124 KTTVIGKLSKKMSDAGL-KVMLAAGD---TFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           KT     L+     AG  K  L   D         I++L I  +   +  V     +  +
Sbjct: 510 KTAATKALADYFFSAGQSKNPLFRLDMSEFQHPGHIERL-IGGEGKPSPLVQHVRANPFS 568

Query: 180 ALAYEAFKQAQAKKVDVLI 198
            +  +  ++A     D L+
Sbjct: 569 VVLLDEIEKADDSVFDALL 587


>gi|78060707|ref|YP_367282.1| branched chain amino acid ABC transporter ATPase [Burkholderia sp.
           383]
 gi|77965257|gb|ABB06638.1| amino acid/amide ABC transporter ATP-binding protein 1, HAAT family
           [Burkholderia sp. 383]
          Length = 250

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 17/136 (12%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           +   +E + +    L    +     R   IL ++G NG GK+T    LS  +  +G ++ 
Sbjct: 9   VRLRAEGLSRRFGGLLAVSDLSLEIREREILGLIGPNGAGKSTTFNLLSGFLVPSGGRLE 68

Query: 144 LAAGD----------------TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           +   D                TF+  ++ +     D      +    G+     A    +
Sbjct: 69  IGGHDMTGRSPETISRHGLVRTFQHGSLMRTMTVEDNILIGAIGGMRGTSHRERARRVRE 128

Query: 188 QAQAKKVDVLIIDTAG 203
            A+   +  ++ DTAG
Sbjct: 129 TAELVGLQQVLGDTAG 144


>gi|254501089|ref|ZP_05113240.1| sulfate adenylyltransferase, large subunit subfamily, putative
           [Labrenzia alexandrii DFL-11]
 gi|222437160|gb|EEE43839.1| sulfate adenylyltransferase, large subunit subfamily, putative
           [Labrenzia alexandrii DFL-11]
          Length = 644

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 9/108 (8%)

Query: 54  IRSDIGVAVAQK--------IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           + SD+     +         +++ +  +     + V   L   + +  + L    K    
Sbjct: 398 LSSDVAFDPYEANRTTGSFILIDRMTNQTVGAGM-VWFALRRATNIHWQALDIDRKARAD 456

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
               +P V+   G++G GK+T+   + K++   G       GD  R  
Sbjct: 457 KMGQQPAVLWFTGLSGSGKSTIASLVEKRLHAEGRHTYTLDGDNVRHG 504


>gi|307716480|gb|ADN88287.1| polyprotein [Calicivirus chicken/V0021/Bayern/2004]
          Length = 2311

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 18/133 (13%)

Query: 67  VEELLTKRYAKDVS---------VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +++LL +   + VS         + +   D+ EL +++   LS          P   L  
Sbjct: 288 IDQLLEEARERQVSHPGHPLLSALTKHASDLKELQNQLRGKLS---LLAKRDPPAFYLFT 344

Query: 118 GVNGVGKTTVIGKLSKKMS---DAGLKVMLAAGDTFRSAAI---DQLKIWADRTSADFVC 171
           G  G+GKTT++  L+ ++S    +     L   DT+    +   D++           V 
Sbjct: 345 GPPGIGKTTLVQHLAARLSPIAPSNFPGHLDHYDTYNPGPVCIWDEMTNTPPDLMVQHVL 404

Query: 172 SEIGSDAAALAYE 184
             + S    L  +
Sbjct: 405 GMVNSTPYPLNCD 417


>gi|296129443|ref|YP_003636693.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas flavigena DSM
           20109]
 gi|296021258|gb|ADG74494.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas flavigena DSM
           20109]
          Length = 895

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 50/162 (30%), Gaps = 19/162 (11%)

Query: 117 VGVNGV-GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           V V G  GKTT  G L+  +  AG     A G   R+ A       A      FV     
Sbjct: 512 VAVAGAHGKTTTSGMLAAALVHAGADPSFAIGGVVRATA--GTLGGARHGDGPFVAEADE 569

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
           SD + LAYE           V ++      H +        +     +R         L 
Sbjct: 570 SDGSFLAYEPL---------VAVVTNVEPDHLDHYGTRE--RFEAAFERFADRVRDGGLL 618

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIM----TKMDGTARGG 273
           V  A     A     + H +    G+ +    T  D   R G
Sbjct: 619 VACADDPGAARLVAAVRHRLTE-RGVALRTYGTSADADVRVG 659


>gi|257126029|ref|YP_003164143.1| cobyrinic acid ac-diamide synthase [Leptotrichia buccalis C-1013-b]
 gi|257049968|gb|ACV39152.1| Cobyrinic acid ac-diamide synthase [Leptotrichia buccalis C-1013-b]
          Length = 268

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 96  LMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           L+   K  + + S   H ++++ G  GVGKTT    L+  +S  G KV +   D
Sbjct: 7   LIERKKRIDSNMSQIKHKIVVMSGKGGVGKTTTAINLAYGLSLRGYKVGVLDAD 60


>gi|222823705|ref|YP_002575279.1| cell division protein FtsH [Campylobacter lari RM2100]
 gi|222538927|gb|ACM64028.1| cell division protein FtsH [Campylobacter lari RM2100]
          Length = 532

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + I++ +++     DV+           I   L   +K  N+     P  +L+VG  GVG
Sbjct: 133 KNIIKAVVSDVKFDDVAGVEEAKVELLEIVDFLKNPTKYKNFGV-KMPKGVLLVGPPGVG 191

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KT     ++K ++             ++S A          +  +            L  
Sbjct: 192 KT----LIAKAVAGEAGVPF-----FYQSGA----------SFVEIYVGMGAKRVRELFL 232

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A  QA +    +  ID  G+   +   +     + ++L ++D    +S + V+ AT   
Sbjct: 233 KAKSQAPSIIF-IDEIDAIGKSRGDFSNVERDSTLNQLLTQMDGFEDNSGVIVIAATNKI 291

Query: 244 NALRQV 249
           + +   
Sbjct: 292 DLMDSA 297


>gi|223044463|ref|ZP_03614494.1| vga protein [Staphylococcus capitis SK14]
 gi|222442152|gb|EEE48266.1| vga protein [Staphylococcus capitis SK14]
          Length = 645

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 22/188 (11%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +    DV   R L    +       P+++P N +     H I V+G NGVGKTT+I  +
Sbjct: 323 ERNTGNDVMHIRDLKIGYD------SPITQPINIEVFKGDH-IAVIGPNGVGKTTLIKTI 375

Query: 132 S-KKMSDAGLKVMLAAGDTFRSAAIDQLKIW--ADRTSADFVCSEIGSDAAALAYEAFKQ 188
           + K+    G     A     +    DQ +    +++T  D+V  +  +           +
Sbjct: 376 ADKQNKLGGEITFGANL---QIGYYDQKQAEFKSNKTILDYVWDQYPTMNEKDVRAVLGR 432

Query: 189 AQAKKVDV--LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
               + DV  +I D +G       L   + +   VL   +P     +         +  L
Sbjct: 433 FLFVQEDVKKIINDLSGGEKARLQLALLMLQKDNVLILDEPTNHLDI-------DSKEML 485

Query: 247 RQVEMFHA 254
            Q      
Sbjct: 486 EQALKHFE 493


>gi|213964490|ref|ZP_03392690.1| ATP-dependent helicase HrpA [Corynebacterium amycolatum SK46]
 gi|213952683|gb|EEB64065.1| ATP-dependent helicase HrpA [Corynebacterium amycolatum SK46]
          Length = 1339

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 74/192 (38%), Gaps = 31/192 (16%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           I +D+  A+     E L  +R A    + R+ Y     +      +++    +      V
Sbjct: 75  ISADLSFAL-----ERLEDRRKA----IPRITYPAQLPVSARHDDIAEAIENN-----QV 120

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +++ G  G GKTT I K+  ++   G++  +      R AA         R+ A+ +  E
Sbjct: 121 VIIAGETGSGKTTQIPKICLEL-GRGVRGKIGHTQPRRIAA---------RSVAERIAHE 170

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLDPHAPH 231
           +G         A +       D +  DT  +L  + IL+A IG  +++R    +     H
Sbjct: 171 LGEKIGQHVGYAVRFD-----DRVGKDTCIKLMTDGILLAEIGRDRLLREYDTIIIDEAH 225

Query: 232 SVLQVLDATTGQ 243
                +D   G 
Sbjct: 226 ERSLNIDFLLGY 237


>gi|153814604|ref|ZP_01967272.1| hypothetical protein RUMTOR_00818 [Ruminococcus torques ATCC 27756]
 gi|145848098|gb|EDK25016.1| hypothetical protein RUMTOR_00818 [Ruminococcus torques ATCC 27756]
          Length = 489

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIH---------KMLMPLSKPFNWDFSHRPHVI 114
           ++ ++ + T+   KD S    L DV  L+               +    +++      V 
Sbjct: 226 RRFLDVMETEPEIKDASDAEELTDVKGLVRYENVSFHYADDDTSVLSHISFEIPAGRSV- 284

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
            +VG +G GKTT+   L +     G ++ +   D  R+  +  L+        D      
Sbjct: 285 ALVGPSGSGKTTICSLLPRFYDVTGGRITIDGKDV-RTLTLKSLRSHIGVVQQDVY---- 339

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
               +    +     +    D  IID A R + + 
Sbjct: 340 --LFSGTIRDNIAYGKPDASDEEIIDAAKRANIHD 372


>gi|154412610|ref|XP_001579337.1| ABC transporter family protein [Trichomonas vaginalis G3]
 gi|121913543|gb|EAY18351.1| ABC transporter family protein [Trichomonas vaginalis G3]
          Length = 807

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTV 127
           E+ T +   +VS    +  + ++       ++   N DF  +R  VI+++G NG GK+T+
Sbjct: 478 EIQTSKVNAEVSEFVRVKGLKKVFKAQGKEVTALDNVDFYINRGEVIVMIGPNGAGKSTL 537

Query: 128 IGKLS-KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           I  L+     D G   +L   +T R       K         F
Sbjct: 538 INILAGAIEPDEGKINILGGNETDR------FKEMQHYLGVCF 574


>gi|312623034|ref|YP_004024647.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203501|gb|ADQ46828.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 616

 Score = 38.7 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L  K    DV+      +  + +   L    K      +  P  IL+VG  G GKT 
Sbjct: 158 IQDLKKKVTFADVAGADEEKEELKEVIDFLKNPRKYIELG-ARIPKGILLVGPPGTGKTL 216

Query: 127 VIGK 130
            + K
Sbjct: 217 -LAK 219


>gi|300718584|ref|YP_003743387.1| cell division protease [Erwinia billingiae Eb661]
 gi|299064420|emb|CAX61540.1| Cell division protease [Erwinia billingiae Eb661]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      D    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 153 DVAGCDEAKDEVAELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 208 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 251

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|293608660|ref|ZP_06690963.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829233|gb|EFF87595.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 1285

 Score = 38.7 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 75/227 (33%), Gaps = 45/227 (19%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E+E L  +S     V Q+  E L   +  +D+ V +    + + I               
Sbjct: 32  EIEKLFEQS--NAKVRQRF-ERLPKIKLNQDLPVSQYADRLIDAI--------------- 73

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS- 166
             +  VI+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+    
Sbjct: 74  -QKHQVIIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGE 131

Query: 167 ---------ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSIL 211
                      F           L  +    A+          D +IID A     N   
Sbjct: 132 KLGESIGFKIRFNVQGSQDSIVRLMTDGILLAELGNDRYLSKYDTIIIDEAHERSLNIDF 191

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           + G       LK+L P  P   + V  AT     + +   +   A  
Sbjct: 192 IMGY------LKQLLPKRPDLKVIVTSATL---DVNRFSNYFNDAPI 229


>gi|253686967|ref|YP_003016157.1| ATP-dependent metalloprotease FtsH [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753545|gb|ACT11621.1| ATP-dependent metalloprotease FtsH [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 649

 Score = 38.7 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  IL+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVSELVEYLREPSRFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                           + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|255719390|ref|XP_002555975.1| KLTH0H02200p [Lachancea thermotolerans]
 gi|238941941|emb|CAR30113.1| KLTH0H02200p [Lachancea thermotolerans]
          Length = 181

 Score = 38.7 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           +SK FN     +   IL+VG++G GKTTV+ KL  
Sbjct: 5   ISKLFNSLVGSKEMRILMVGLDGAGKTTVLYKLKL 39


>gi|227328604|ref|ZP_03832628.1| ATP-dependent metalloprotease [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 646

 Score = 38.7 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  IL+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVEYLREPSRFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                           + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|255552979|ref|XP_002517532.1| D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus
           communis]
 gi|223543164|gb|EEF44696.1| D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus
           communis]
          Length = 463

 Score = 38.7 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 24/74 (32%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
              +      F       P VI      G GKTT++  L       G K    + D F  
Sbjct: 197 EDKISKYVSQFKDGEDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL 256

Query: 153 AAIDQLKIWADRTS 166
            A  Q K+  + + 
Sbjct: 257 TAEGQAKLRGENSG 270


>gi|222528657|ref|YP_002572539.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor bescii DSM
           6725]
 gi|310943117|sp|B9MPK5|FTSH_ANATD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|222455504|gb|ACM59766.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor bescii DSM
           6725]
          Length = 616

 Score = 38.7 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L  K    DV+      +  + +   L    K      +  P  IL+VG  G GKT 
Sbjct: 158 IQDLKKKVTFADVAGADEEKEELKEVIDFLKNPRKYIELG-ARIPKGILLVGPPGTGKTL 216

Query: 127 VIGK 130
            + K
Sbjct: 217 -LAK 219


>gi|124025327|ref|YP_001014443.1| putative multidrug efflux ABC transporter [Prochlorococcus marinus
           str. NATL1A]
 gi|123960395|gb|ABM75178.1| putative multidrug efflux ABC transporter [Prochlorococcus marinus
           str. NATL1A]
          Length = 598

 Score = 38.7 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 25/163 (15%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           ++L +     + +  +    + +  R+ + + +++E               I +    K 
Sbjct: 297 QRLFEPLRQLAERFTQIQGGLTAVERISELLEKKIE---------------IYDHFNHKA 341

Query: 75  YAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             K++   +    + E++ + +        P+ K  ++      HV  +VG  G GKTT+
Sbjct: 342 ENKELLNSK-KTVLGEVLFENVSFFYREDEPIIKDLSFKIKPGDHV-ALVGPTGSGKTTL 399

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           I  L +        +    G   +S  IDQL+        D  
Sbjct: 400 IRLLCRLYEPQKGNIY-IDGQNIKSIPIDQLRKQLGVVLQDTF 441


>gi|320546949|ref|ZP_08041250.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Streptococcus equinus ATCC 9812]
 gi|320448351|gb|EFW89093.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Streptococcus equinus ATCC 9812]
          Length = 589

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 25/128 (19%)

Query: 21  FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVS 80
            AS     K  +  I         V +E E+          V +++  +L  +   +DVS
Sbjct: 310 LASILQSAKSSLERIF-------EVLDEPEEA-------AEVKEQLTHDLSGQVTFEDVS 355

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            Q               PL + FN D      V  +VG  G GKTT+I  L +     G 
Sbjct: 356 FQYTPD----------KPLIRNFNLDVKPGEMV-AIVGPTGAGKTTLINLLMRFYDVTGG 404

Query: 141 KVMLAAGD 148
            + +   D
Sbjct: 405 SIKIDGHD 412


>gi|313667292|ref|YP_004049693.1| AAA ATPase central domain protein [Oceanithermus profundus DSM
           14977]
 gi|313153923|gb|ADR37773.1| AAA ATPase central domain protein [Oceanithermus profundus DSM
           14977]
          Length = 530

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG 121
             + ++ EL  +    D      L  V+EL   +  P      W     P   L+ G  G
Sbjct: 273 TTKDVITELKKELVLPD----ETLRAVAELAVLISDPEGFRQTWQM-DPPKGALLWGPPG 327

Query: 122 VGKTTVIGKLS 132
            GKTT+  K++
Sbjct: 328 TGKTTIARKIA 338


>gi|296206117|ref|XP_002750074.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
           [Callithrix jacchus]
          Length = 520

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+   
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKHY 82


>gi|227113767|ref|ZP_03827423.1| ATP-dependent metalloprotease [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 646

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  IL+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVEYLREPSRFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                           + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|212693112|ref|ZP_03301240.1| hypothetical protein BACDOR_02619 [Bacteroides dorei DSM 17855]
 gi|212664217|gb|EEB24789.1| hypothetical protein BACDOR_02619 [Bacteroides dorei DSM 17855]
          Length = 274

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 19/94 (20%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT+    +  +   G++V++   D   S              AD            
Sbjct: 16  GVGKTTLCVTFANYLVTNGVRVVVIDCDFQHS--------IMKCRKADIRKYGEQEMPYE 67

Query: 181 L-AYEAFKQA----------QAKKVDVLIIDTAG 203
           + AYEA  +A             ++DV+++D+ G
Sbjct: 68  VWAYEANDKAMMTSLMEKLHNDPEIDVVLMDSPG 101


>gi|197287224|ref|YP_002153096.1| cell division protein [Proteus mirabilis HI4320]
 gi|227357081|ref|ZP_03841451.1| M41 family endopeptidase FtsH [Proteus mirabilis ATCC 29906]
 gi|194684711|emb|CAR46686.1| cell division protein [Proteus mirabilis HI4320]
 gi|227162773|gb|EEI47736.1| M41 family endopeptidase FtsH [Proteus mirabilis ATCC 29906]
          Length = 646

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L  P  F       P  IL+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVEYLRDPGRFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|34580883|ref|ZP_00142363.1| Mrp protein [Rickettsia sibirica 246]
 gi|28262268|gb|EAA25772.1| Mrp protein [Rickettsia sibirica 246]
          Length = 319

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 68  EELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           EE+  K   K  ++S    +  V      M   + KP ++  + +  +++  G  GVGK+
Sbjct: 53  EEIRLKAINKLNEISAVNKITIVFTESKPMEKKVQKPKHFVENVKKIILVASGKGGVGKS 112

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTF 150
           T+   +++++S A  +V +   D +
Sbjct: 113 TISALIAQQLSLANYRVGIVDADIY 137


>gi|167768035|ref|ZP_02440088.1| hypothetical protein CLOSS21_02578 [Clostridium sp. SS2/1]
 gi|167710364|gb|EDS20943.1| hypothetical protein CLOSS21_02578 [Clostridium sp. SS2/1]
 gi|291561033|emb|CBL39833.1| Uridine kinase [butyrate-producing bacterium SSC/2]
          Length = 550

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +GV     + +E+        + +Q  L +      K+L  ++       S    +IL+ 
Sbjct: 241 MGVDTVGALNDEITHGNINHLILLQEGLQE------KLLADIADEI---VSKNKRIILIA 291

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           G +  GKTT   +LS ++  AGL     + D +
Sbjct: 292 GPSSSGKTTFSHRLSIQLQIAGLTPHPVSMDDY 324


>gi|254304241|ref|ZP_04971599.1| phospholipid-lipopolysaccharide ABC superfamily ATP binding
           cassette transporter ABC protein [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324433|gb|EDK89683.1| phospholipid-lipopolysaccharide ABC superfamily ATP binding
           cassette transporter ABC protein [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 583

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 16/116 (13%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPLSKP 102
           +L+D L  +D    V +   E++ T  + + +     + D+               + K 
Sbjct: 305 DLQDSLPSAD---RVVEIFDEKVETDVFGEAIEFDEKIQDIKFENVNYKYEDSNEYVLKN 361

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-------SDAGLKVMLAAGDTFR 151
            N D      ++  VG +G GKTT++  L++            G+ +       +R
Sbjct: 362 INLDVKAG-EIVAFVGKSGSGKTTLVNLLARFFNTDEGTVKVNGVNIKNIPLKIYR 416


>gi|72383727|ref|YP_293082.1| multidrug ABC transporter [Prochlorococcus marinus str. NATL2A]
 gi|72003577|gb|AAZ59379.1| ATPase [Prochlorococcus marinus str. NATL2A]
          Length = 598

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 31/151 (20%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           ++L +     + +  +    + +  R+ + + +++E               I + +  K 
Sbjct: 297 QRLFEPLRQLAERFTQIQGGLTAVERIGELLEKKIE---------------IYDHINHKA 341

Query: 75  YAKDVSVQRVLYDVSELIHKML-------MPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             K+ S+      + E++ + +        P+    ++      HV  +VG  G GKTT+
Sbjct: 342 ENKE-SLNSNKTVLGEVLFENVSFFYREDEPIINDLSFKIKPGEHV-ALVGPTGSGKTTL 399

Query: 128 IGKLSKKMSDA-------GLKVMLAAGDTFR 151
           I  L +            G  +     D+ R
Sbjct: 400 IRLLCRLYEPQKGNIYIDGQNIKSIPIDSLR 430


>gi|84387778|ref|ZP_00990793.1| adenylylsulfate kinase [Vibrio splendidus 12B01]
 gi|84377293|gb|EAP94161.1| adenylylsulfate kinase [Vibrio splendidus 12B01]
          Length = 206

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 99  LSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           + K F  D  S +P V+   G++G GK+TV G L  +++  G    L  GD  R  
Sbjct: 19  IDKTFRSDLKSQKPAVLWFTGLSGSGKSTVAGALENRLAQLGYHTYLLDGDNVRHG 74


>gi|330892219|gb|EGH24880.1| putative plasmid stability/partitioning protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 217

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ-LKIWAD-RTSADFVCSEIGSDA 178
           GVGKTT+I  L+  +      V +   D       +Q L++W   R   D     + +  
Sbjct: 11  GVGKTTLIANLAVMLQKKTASVAIVRAD------KNQDLEVWTRFRAEKDVPDIPVMTCY 64

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             ++ +  K       DV+ +DTAG     
Sbjct: 65  GDISKDIRK--LETVTDVVFVDTAGHDSME 92


>gi|326933753|ref|XP_003212964.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           2-like [Meleagris gallopavo]
          Length = 496

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 33/71 (46%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +   +     P+    ++ P +I+++G+   GKT V  KL++ ++  G+   +     +
Sbjct: 11  ELSAQIGTEPNPWASYMTNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTRVFNLGVY 70

Query: 151 RSAAIDQLKIW 161
           R  A+   K +
Sbjct: 71  RREAVKSYKSY 81


>gi|251782234|ref|YP_002996536.1| ABC transporter ATP-binding/permease [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390863|dbj|BAH81322.1| ABC transporter,ATP-binding/permease protein [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 590

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 11/103 (10%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
            E +  +L  +D  + V  ++ E+L  +     V                  PL K F  
Sbjct: 321 LERIFAVLDEADDAMLVTDQLDEDLTGQVSFNHVDFSYQSD----------KPLIKEFTL 370

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           D +    +I +VG  G GKTT+I  L +        + +   D
Sbjct: 371 DVNPG-EMIAIVGPTGAGKTTLINLLMRFYDVNKGSITVDGHD 412


>gi|160884299|ref|ZP_02065302.1| hypothetical protein BACOVA_02277 [Bacteroides ovatus ATCC 8483]
 gi|255691630|ref|ZP_05415305.1| putative CobQ/CobB/MinD/ParA nucleotide binding domain protein
           [Bacteroides finegoldii DSM 17565]
 gi|156110038|gb|EDO11783.1| hypothetical protein BACOVA_02277 [Bacteroides ovatus ATCC 8483]
 gi|260622701|gb|EEX45572.1| putative CobQ/CobB/MinD/ParA nucleotide binding domain protein
           [Bacteroides finegoldii DSM 17565]
          Length = 262

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTF------RSAAIDQLKIWADRTSADFVCSEI 174
           GVGKTT+    +  +   G++V +   D        R A I   + + +  +   V S  
Sbjct: 16  GVGKTTLCVTFANYLVTKGVRVAVIDCDFQHSIVKCRKADI---RKYGEEHTPYDVLSYE 72

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
            +D  A+     K      +DV+++D+ G
Sbjct: 73  ANDKKAMTDLMEKLHNDPSIDVVLMDSPG 101


>gi|145341280|ref|XP_001415741.1| chaperone, Hsp100 family, ClpB-type [Ostreococcus lucimarinus
           CCE9901]
 gi|144575964|gb|ABO94033.1| chaperone, Hsp100 family, ClpB-type [Ostreococcus lucimarinus
           CCE9901]
          Length = 807

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 98/265 (36%), Gaps = 33/265 (12%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDI----GVAVAQKIVEE 69
           ++KL +   +T  +L      ++  +     +REE+ D  + + +    GV VA+ +  E
Sbjct: 423 LKKLEQQVKTTEDELTAAEAAVLELKDGGAMMREEVTDNDVAAVVSRWTGVPVAKLVSSE 482

Query: 70  ------LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
                 L  + + + +  +  +  V+E + +    L+ P     +      + +G  GVG
Sbjct: 483 KAKLLQLEAELHQRVIGQEAAVTSVAEAVQRSRADLADP-----NGPVASFMFLGPTGVG 537

Query: 124 KTTVIGK-LSKKMSDAGLKVMLAAGDT--FRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           K T + K L+  +            DT   R    + ++  +           +G D   
Sbjct: 538 K-TELAKALASYL---------FNSDTALVRLDMSEYMEKHSVARLIGAPPGYVGYDEGG 587

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNN--SILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
           +  +A +Q   K   V++ D   + H +  ++L+  + +      +    +  + L ++ 
Sbjct: 588 MLTDAVRQ---KPYSVVLFDEIEKAHVDVFNVLLQLLDEGHVTDTQGRNVSFRNCLIIMT 644

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIM 263
           +  G + +               +M
Sbjct: 645 SNLGSDEISYANKRRNKVNVKDAVM 669


>gi|91086165|ref|XP_970259.1| PREDICTED: similar to GA17483-PA [Tribolium castaneum]
 gi|270009883|gb|EFA06331.1| hypothetical protein TcasGA2_TC009202 [Tribolium castaneum]
          Length = 716

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 61/184 (33%), Gaps = 29/184 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  + +  ++  L  P  +       P  +L+VG  G GKT     L++ ++        
Sbjct: 282 EAKQELKDVVEFLKNPDKFSQLGGKLPKGVLLVGPPGTGKT----LLARAVAGE------ 331

Query: 145 AAGDTFRSAAIDQ---LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           A    F +A  +    L     R   D   S        +  +              ID+
Sbjct: 332 AGVPFFHAAGPEFDEILVGQGARRVRDLFKSAKEKAPCVIFIDE-------------IDS 378

Query: 202 AGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
            G    NS+L       + ++L  +D    +  + VL AT  ++ L Q  +         
Sbjct: 379 VGAKRTNSVLHPYANQTINQLLSEMDGFHQNEGVIVLGATNRRDDLDQALLRPGRFDVEV 438

Query: 261 LIMT 264
            + T
Sbjct: 439 TVPT 442


>gi|6093552|gb|AAB58724.2| TAP2 [Mesocricetus auratus]
          Length = 729

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 15/113 (13%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            L  +   +DV+                 P+ K   +   H   V  +VG NG GK+TV 
Sbjct: 488 RLEGRVEFQDVTFSYPSRPEK--------PVLKGLTFTL-HPGKVTALVGPNGSGKSTVA 538

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
             L       G +++L          + Q            V  E    + ++
Sbjct: 539 ALLQNLYQPTGGQLLLDG------QPLVQYDHHYLHRQVVLVGQEPVLFSGSV 585


>gi|32479409|ref|NP_862262.1| GcrA [Corynebacterium striatum]
 gi|709809|gb|AAC95478.1| unknown [Corynebacterium striatum]
 gi|9945816|gb|AAG03390.1| GcrA [Corynebacterium striatum]
          Length = 208

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK----IWADRTS 166
           P +  +    G GKTT    L+   +  G  V +   D  +  A + ++     + +  +
Sbjct: 2   PVISCLNAKGGTGKTTSAINLAAVAAYRGYTVHVLDADAEQGTASEWIEYANDAFEENPN 61

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           A  V  E+ +    +     K+      D++IID     H+ S L+      +
Sbjct: 62  APHVDVEVEAVNRGILARKVKKYSD---DLVIIDGPPSNHSMSELIIENSDFV 111


>gi|6093548|gb|AAB58722.2| TAP2 [Mesocricetus auratus]
          Length = 729

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 15/113 (13%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            L  +   +DV+                 P+ K   +   H   V  +VG NG GK+TV 
Sbjct: 488 RLEGRVEFQDVTFSYPSRPEK--------PVLKGLTFTL-HPGKVTALVGPNGSGKSTVA 538

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
             L       G +++L          + Q            V  E    + ++
Sbjct: 539 ALLQNLYQPTGGQLLLDG------QPLVQYDHHYLHRQVVLVGQEPVLFSGSV 585


>gi|295103197|emb|CBL00741.1| Putative GTPases (G3E family) [Faecalibacterium prausnitzii SL3/3]
          Length = 312

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID------QLKIWADR 164
             V L+ G  G GKTT + +  + +   G KV +   D     A++      Q ++    
Sbjct: 2   VQVDLITGFLGAGKTTFLRRYVRYLVQQGHKVCILENDF---GAVNVDAMLVQ-EVLGPG 57

Query: 165 TSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
              + +                      +  D ++++ +G    + 
Sbjct: 58  CDVETISGGCDCDTHQRRMRTKLIAMAMRGFDRVVVEPSGIFDVDE 103


>gi|156544215|ref|XP_001606701.1| PREDICTED: similar to xpa-binding protein 1 (mbdin) [Nasonia
           vitripennis]
          Length = 378

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           S         +P  I+V+G+ G GKTT + KL  K+ D G K  +   D
Sbjct: 17  SSEGKQGEEKKPTCIVVLGMAGSGKTTFVSKLVSKLYDTG-KPYVINLD 64


>gi|148652802|ref|YP_001279895.1| ATP-dependent helicase HrpA [Psychrobacter sp. PRwf-1]
 gi|148571886|gb|ABQ93945.1| ATP-dependent helicase HrpA [Psychrobacter sp. PRwf-1]
          Length = 1438

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 25/156 (16%)

Query: 68  EELLTKRYAKDVSVQRVLYD---VSELIHKMLMPLSKPFNWDFSHRP--HVILVVGVNGV 122
           E++  +  ++ V  QR+      + +L++  L P+SK             VI+V G  G 
Sbjct: 87  EQIKQR--SQHVVQQRIDSIPHNLPQLLNDEL-PVSKRSTDIIQAITDHQVIIVAGETGS 143

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----------ADFVCS 172
           GKTT + KL+  ++  G+   +      R AA       A+               F   
Sbjct: 144 GKTTQLPKLA-MLAGRGITGQIGHTQPRRLAARSVANRIAEELGEPLGETVSFKIRFNEQ 202

Query: 173 EIGSDAAALAYEAFKQAQAKK------VDVLIIDTA 202
                   L  +    A+          D +IID A
Sbjct: 203 GSAQSVVKLMTDGILLAELGHDRFLTRYDTIIIDEA 238


>gi|315179214|gb|ADT86128.1| cell division protein FtsH [Vibrio furnissii NCTC 11218]
          Length = 418

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 150 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 203

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 204 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 247

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 248 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 296


>gi|298248960|ref|ZP_06972764.1| cobalamin synthesis protein P47K [Ktedonobacter racemifer DSM
           44963]
 gi|297546964|gb|EFH80831.1| cobalamin synthesis protein P47K [Ktedonobacter racemifer DSM
           44963]
          Length = 349

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 9/164 (5%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA---GDTFRSAAIDQLKIWAD 163
              R  V ++VG  G GKTTV+G++     + GLK  L     GD       + L+    
Sbjct: 9   ADQRVPVYVLVGFLGSGKTTVLGEMLGWCVEQGLKPGLIINEFGDVSIDG--EALRKEGL 66

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
             +         +    L     + A+   VD++ ++  G      IL       +   +
Sbjct: 67  AMTELTDGCVCCTAGEELVPAILEMARRPDVDLVFLEATGMADPADILDELTDPFL--WQ 124

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           ++      SV+           L         A    L+M K D
Sbjct: 125 KVVVGGIISVMDSKRIIELAGNLELARKQIEFADV--LVMNKCD 166


>gi|282866688|ref|ZP_06275729.1| hypothetical protein SACTEDRAFT_6274 [Streptomyces sp. ACTE]
 gi|282558474|gb|EFB64035.1| hypothetical protein SACTEDRAFT_6274 [Streptomyces sp. ACTE]
          Length = 1390

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 13/169 (7%)

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
            +  + ++   +L  L  P       R  +++     G GK+T +  L+ K  DAG   +
Sbjct: 652 QVRQLDDVTRDLLSQLEDPRRPGSWRRTGLVM--APVGSGKSTSVIALAAKAVDAGYGTV 709

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
           +    T  +AA DQ++   D     F      S        A     A+ + ++ + T G
Sbjct: 710 VILAGTT-NAARDQMQQRVDEGLLGFDSQYAASSETGGRIGAGAMPHARALPIVSVTTRG 768

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
                     G     + +    P   H  + V+     +  + +V  +
Sbjct: 769 --------EQGDFSPYKAIGLRHPSPAHPQIFVI--KKNRRIVDRVRDW 807


>gi|189424223|ref|YP_001951400.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Geobacter lovleyi SZ]
 gi|189420482|gb|ACD94880.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Geobacter lovleyi SZ]
          Length = 168

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           RP V+  V  +G GKTT++ KL   + + G +V     D  R
Sbjct: 3   RPAVVSFVAHSGTGKTTLLEKLIPILKERGYRVGAIKHDAHR 44


>gi|72393263|ref|XP_847432.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175144|gb|AAX69292.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70803462|gb|AAZ13366.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
 gi|261330681|emb|CBH13666.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 369

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 24/135 (17%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKP-------------FNWDFSHRPHVILVVGVNGVGK 124
           DV       DV   + ++L    K                     RP V+   G NGVGK
Sbjct: 66  DVDRHDYKRDVMGRLARLLQKGLKGQPHVVEGVKGDIAVKLANPGRPLVLHFAGDNGVGK 125

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT+   +S  ++     +    GDT               +   +    +    + +  +
Sbjct: 126 TTLAQLISLALAFRCRDMSCLVGDTS-----------LVLSGVSYDGYSVTDFRSDVVQK 174

Query: 185 AFKQAQAKKVDVLII 199
             + A+    + ++I
Sbjct: 175 IVEHAKRYPRNGVVI 189


>gi|49474220|ref|YP_032262.1| thymidylate kinase [Bartonella quintana str. Toulouse]
 gi|59798258|sp|Q6FZU8|KTHY_BARQU RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
 gi|49239724|emb|CAF26103.1| Thymidylate kinase [Bartonella quintana str. Toulouse]
          Length = 214

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 9/99 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA--AGDTFRSAAID------QLKIWAD 163
           + I   G  GVGKTT I  L++ + + G  V+     G T  + AI       Q + +  
Sbjct: 4   YFITFEGGEGVGKTTQISLLAQYLRNQGYDVLTTREPGGTVGAEAIRHILLSGQAQNYGP 63

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
                 + +        +   + ++ +    D   ID+ 
Sbjct: 64  LIEVILLTAARIDHITEVIAPSLQKGKIVLCD-RFIDST 101


>gi|332158430|ref|YP_004423709.1| hypothetical protein PNA2_0789 [Pyrococcus sp. NA2]
 gi|331033893|gb|AEC51705.1| hypothetical protein PNA2_0789 [Pyrococcus sp. NA2]
          Length = 321

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 21/158 (13%)

Query: 64  QKIVEELLT---KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            ++++ +     +  AK +++       ++ + + + P++           HV+ + G  
Sbjct: 5   DELIDRMKKGDRRAVAKLITLVENDEKKAQEVIRRIFPMTGNA--------HVVGITGPP 56

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSE 173
           G GK+T++ KL K+     L V + A D    F   A+      ++  +           
Sbjct: 57  GAGKSTLLDKLIKEARKEDLIVGVIAIDPTSPFTGGALLGDRIRMQRHSTDPGVFIRSMA 116

Query: 174 IGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNN 208
                  LA    +A K   A   DV+ ++T G     
Sbjct: 117 TRGSLGGLAKATNDAVKVLDAYGCDVIFVETVGVGQVE 154


>gi|307263757|ref|ZP_07545363.1| hypothetical protein appser13_11680 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306870878|gb|EFN02616.1| hypothetical protein appser13_11680 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 857

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 81/207 (39%), Gaps = 17/207 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++      I  L K  A    + +EG  + +   ++ D   EE+ ++L ++  G+ V+
Sbjct: 494 EKMSELQYGKIPALEKQLAEAVKREEEGGENQLLRTKVTD---EEIAEVLSKA-TGIPVS 549

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNG 121
            K++E    K    +  +   +   +E +  +   + +        +RP    L +G  G
Sbjct: 550 -KMMEGEKEKLLRMEEVLHSRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTG 608

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKT +   L+  + D    +        R    + ++  +           +G +    
Sbjct: 609 VGKTELCKTLANFLFDDPDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY 661

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             EA ++   +   V+++D   + H +
Sbjct: 662 LTEAVRR---RPYSVVLLDEVEKAHPD 685


>gi|307257140|ref|ZP_07538912.1| hypothetical protein appser10_11400 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864302|gb|EFM96213.1| hypothetical protein appser10_11400 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 857

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 81/207 (39%), Gaps = 17/207 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++      I  L K  A    + +EG  + +   ++ D   EE+ ++L ++  G+ V+
Sbjct: 494 EKMSELQYGKIPALEKQLAEAVKREEEGGENQLLRTKVTD---EEIAEVLSKA-TGIPVS 549

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNG 121
            K++E    K    +  +   +   +E +  +   + +        +RP    L +G  G
Sbjct: 550 -KMMEGEKEKLLRMEEVLHSRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTG 608

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKT +   L+  + D    +        R    + ++  +           +G +    
Sbjct: 609 VGKTELCKTLANFLFDDPDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY 661

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             EA ++   +   V+++D   + H +
Sbjct: 662 LTEAVRR---RPYSVVLLDEVEKAHPD 685


>gi|256847923|ref|ZP_05553368.1| ATP-dependent chaperone ClpB [Lactobacillus coleohominis 101-4-CHN]
 gi|256715612|gb|EEU30588.1| ATP-dependent chaperone ClpB [Lactobacillus coleohominis 101-4-CHN]
          Length = 736

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 76/204 (37%), Gaps = 20/204 (9%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKT 125
           +++L  K  A  +     +  ++  I +  + L+K      S RP    L VG  GVGKT
Sbjct: 425 LKDLDKKLDAHVIGQTEAVDKIARAIRRNRIGLNK------SGRPIGSFLFVGPTGVGKT 478

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
               +L++++   G K  +   D          +     +++  + S  G      A + 
Sbjct: 479 ETAKQLAQQL--FGSKDAMIRFDMS--------EYMDKMSTSKLIGSAPGYVGYEEAGQL 528

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +Q +     ++++D   + H + +   L       +   +        +++ +      
Sbjct: 529 TEQVRRHPYSLILLDEVEKAHPDVMHMFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGS 588

Query: 243 QNALRQVEMFHAVAGTTGLIMTKM 266
            +A+  V      +G T  ++ K+
Sbjct: 589 GDAVTSVGFGAEASGNTSSVLDKL 612


>gi|224541626|ref|ZP_03682165.1| hypothetical protein CATMIT_00797 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525464|gb|EEF94569.1| hypothetical protein CATMIT_00797 [Catenibacterium mitsuokai DSM
           15897]
          Length = 600

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 45/159 (28%), Gaps = 16/159 (10%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK--IWA 162
            D     H  L  G  G GKTTV   L+K ++  G        +        Q++     
Sbjct: 34  IDEKKIAHAYLFCGPRGTGKTTVAKLLAKAVNCTGNPKPCGECEN-----CKQIENGTHP 88

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D    D   +    +  +L  +        +  V IID          +          L
Sbjct: 89  DVIEIDAASNNGVEEVRSLIDKVKYAPTQGQYKVYIID---------EVHMMSPGAFNAL 139

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
            +     P  V+ +L  T     L  +         T L
Sbjct: 140 LKTLEEPPAHVIFILATTEPHKILPTIISRCQRFDFTRL 178


>gi|332993369|gb|AEF03424.1| ATP-dependent metalloprotease FtsH [Alteromonas sp. SN2]
          Length = 645

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 52/169 (30%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV+EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 159 DEAKEDVTELVDFLRDP--SKFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKV 212

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 213 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 256

Query: 202 AGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR     +          + ++L  +D    H  + V+ AT   + L 
Sbjct: 257 VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGHEGIIVIAATNRPDVLD 305


>gi|331090735|ref|ZP_08339582.1| hypothetical protein HMPREF9477_00225 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399843|gb|EGG79502.1| hypothetical protein HMPREF9477_00225 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 518

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 64  QKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             I+E    +   +       +  + +++  +L+     PLSKP       R H I +VG
Sbjct: 299 MDIIELAAERPKPEFHFKTGRTPGKYIFETKDLVIGYDEPLSKPLTLAME-RGHKIALVG 357

Query: 119 VNGVGKTT 126
            NG+GKTT
Sbjct: 358 ANGIGKTT 365


>gi|303390791|ref|XP_003073626.1| replication factor C [Encephalitozoon intestinalis ATCC 50506]
 gi|303302773|gb|ADM12266.1| replication factor C [Encephalitozoon intestinalis ATCC 50506]
          Length = 309

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 9/114 (7%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK-LSKKMSDAGLKVMLA 145
           +V ++I   +         D    PH +L  G  G GKTT   K L++K+  +   ++  
Sbjct: 12  EVQDVIGNQMTVELVSLIIDSKDMPH-LLFAGPPGTGKTT-CAKILARKLLPSKEGLLEL 69

Query: 146 AG------DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                   +T R+      +      S   +  +        A +A ++     
Sbjct: 70  NASDERGIETVRTTIKSFAQRRIKDCSFKVIILDEADSMTTAAQQAMRRVMEVH 123


>gi|298245668|ref|ZP_06969474.1| LAO/AO transport system ATPase [Ktedonobacter racemifer DSM 44963]
 gi|297553149|gb|EFH87014.1| LAO/AO transport system ATPase [Ktedonobacter racemifer DSM 44963]
          Length = 317

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 25/162 (15%)

Query: 64  QKIVEELLT---KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           Q I+E LL    +  A+ V++       +    + L  L +      S   H+I V G  
Sbjct: 2   QNIIERLLQGDRRALARMVTLIENEAPAA---SRYLAELHR-----HSGNAHIIGVTGSP 53

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GK+T++ +L ++      KV + A D   ++      I  DR     +  +      +
Sbjct: 54  GAGKSTLVARLVREYRRRECKVGVIAVDP--TSPFSGGAILGDRIRMMELAGDPNIFIRS 111

Query: 181 LA------------YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           +A             +A +   A   D +II+T G       
Sbjct: 112 MASRGNLGGLSASTRDAVRAMDAAGYDPIIIETVGTGQAEVE 153


>gi|256996831|dbj|BAI22706.1| DNA mismatch repair protein [Acetobacter pasteurianus]
          Length = 884

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTT----VIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P   D + +  V+L+ G N  GK+T        L+  ++  G        D  R   +D
Sbjct: 619 TPNTCDLAPQQRVMLLTGPNMAGKSTYLRQTA--LAVILAQGGFP---VPADRVRIGVVD 673

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           QL  ++   ++D +     +    +   A    QA    ++++D  GR
Sbjct: 674 QL--FSRVGASDDLARGRSTFMVEMTETAAILNQAGPRSLVVVDEIGR 719


>gi|222151965|ref|YP_002561125.1| ABC transporter ATP-binding protein [Macrococcus caseolyticus
           JCSC5402]
 gi|222121094|dbj|BAH18429.1| ABC transporter ATP-binding protein [Macrococcus caseolyticus
           JCSC5402]
          Length = 639

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           R+  D      +   +EL      PL+   N+D S +   I  +G NG+GKTT+I  ++K
Sbjct: 319 RFNIDKETGNDVLRCTELAIGYTTPLATNINFDVSKQDA-IAFIGPNGIGKTTLIKTIAK 377

Query: 134 KMSD 137
            +  
Sbjct: 378 LLKP 381


>gi|253991508|ref|YP_003042864.1| ATP-dependent metalloprotease [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638386|emb|CAR67008.1| atp-binding protein (ec 3.4.24.-) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782958|emb|CAQ86123.1| ATP-binding protein [Photorhabdus asymbiotica]
          Length = 653

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  F       P  IL+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVGELVEYLREPGRFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|24376228|ref|NP_720272.1| ParA family protein [Shewanella oneidensis MR-1]
 gi|24351288|gb|AAN57715.1|AE015907_13 ParA family protein [Shewanella oneidensis MR-1]
          Length = 262

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 26/140 (18%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  ++    KV+L   D                     + S +      
Sbjct: 13  GVGKTTTCVNLAASLAATKRKVLLIDLD---------------PQGNATMGSGVDKYEVE 57

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
                    +    D+++ DTAG+      L+A  G +     +L       V       
Sbjct: 58  NTAYELLVEEKPFDDIVVKDTAGKY----DLIASNGDVTAAEIKLMEFFAREVRL----- 108

Query: 241 TGQNALRQVEMFHAVAGTTG 260
             +NAL  ++  +       
Sbjct: 109 --RNALAPIKDQYDYIFIDC 126


>gi|37521365|ref|NP_924742.1| hypothetical protein gll1796 [Gloeobacter violaceus PCC 7421]
 gi|35212362|dbj|BAC89737.1| gll1796 [Gloeobacter violaceus PCC 7421]
          Length = 676

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 33/182 (18%)

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS------- 172
            G GKTTV   L+K + + G +V++   D  ++    +L++           S       
Sbjct: 504 TGEGKTTVTLGLAKALRELGFRVLVVDADFRQAGLGRKLQVGPGSEPVALAPSLSFLPAG 563

Query: 173 --EIGSDAAALAYEAF------KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
             +  +                +   A   D ++IDTA        L+A    +   +  
Sbjct: 564 RPDERTSVGEYIARGHFSRYLSELESAGGYDYVLIDTAP-----EDLVAETKLIAAAIGN 618

Query: 225 LDPHAPHSVLQVL-DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                   VL V+    + ++ +          G++  ++     +A+G         ++
Sbjct: 619 --------VLFVVRPGVSNRDEVNASLAALQRFGSSVHLVINGGESAKG----SYRYRYE 666

Query: 284 IP 285
            P
Sbjct: 667 RP 668


>gi|330465453|ref|YP_004403196.1| ABC transporter-like protein [Verrucosispora maris AB-18-032]
 gi|328808424|gb|AEB42596.1| ABC transporter-like protein [Verrucosispora maris AB-18-032]
          Length = 243

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           P+      D  H P V  +VG NG GKTT++  L+  +   
Sbjct: 16  PVLHDLTLDLRH-PGVHALVGPNGAGKTTLLHTLAGHLHPR 55


>gi|221195854|ref|ZP_03568907.1| Cell division protease FtsH homolog [Atopobium rimae ATCC 49626]
 gi|221184328|gb|EEE16722.1| Cell division protease FtsH homolog [Atopobium rimae ATCC 49626]
          Length = 631

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 58/176 (32%), Gaps = 25/176 (14%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           KDV+ Q    +  + I   L    K +    +  P   L+VG  G GKT  I K      
Sbjct: 173 KDVAGQEEAKESMQEIVGFLKTPDK-YTEIGARSPRGALLVGPPGTGKTL-IAK------ 224

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                   A    F+ A  +           +       +    L  +A ++A      +
Sbjct: 225 ---AVAGEAGVPFFQIAGSEF---------VEMFVGRGAAKVRDLFKQANEKAPCIIF-I 271

Query: 197 LIIDTAGRLHNNSILM---AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             ID  G+   ++ L         + ++L  +D    H  + VL AT     L Q 
Sbjct: 272 DEIDAVGKR-RDAPLNTNDEREQTLNQLLSEMDGFDNHKGIVVLAATNRPETLDQA 326


>gi|170761619|ref|YP_001787678.1| stage V sporulation protein K [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408608|gb|ACA57019.1| stage V sporulation protein K [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 1212

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 31/198 (15%)

Query: 31  GITDIISSRRLD--DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
            + DII  R     D V++ELE++     IG+   ++ VE L      + +         
Sbjct: 396 KLADIIPQRNTAGIDDVKKELENI-----IGLKSVKQYVESLEDNLKIQKMRESSGFKAA 450

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAG 147
           +  +H                    ++  G  G GKTT I ++ +K +   G+       
Sbjct: 451 NISMH--------------------MIFTGNPGTGKTT-IARIVAKYLKALGILSQGQLR 489

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT--AGRL 205
           +  R+  + Q      + + D + S +G         A  + +     +  IDT   G  
Sbjct: 490 EVTRADLVGQYVGHTAKLTNDVIKSSLGGVLFIDEAYALCRDKEDIFGIEAIDTLVKGIE 549

Query: 206 HNNSILMAGIGKMIRVLK 223
            N   L+  +      + 
Sbjct: 550 DNREDLVVILAGYKDEMN 567


>gi|125534731|gb|EAY81279.1| hypothetical protein OsI_36459 [Oryza sativa Indica Group]
          Length = 916

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           V+ L      K ++    + + S+ + KMLM   K           ++ +VG  G+GKTT
Sbjct: 155 VDSLRLSALYKKMTELVGIEEKSDELVKMLMEGDK-------QELKIVSIVGFGGLGKTT 207

Query: 127 VIGKLSK-KMSDAGLKVMLAAG 147
            + K+   K+            
Sbjct: 208 -LAKVVHEKLKVQFACGFFVTM 228


>gi|91087737|ref|XP_974737.1| PREDICTED: similar to adenylate kinase 7 [Tribolium castaneum]
 gi|270009399|gb|EFA05847.1| hypothetical protein TcasGA2_TC008636 [Tribolium castaneum]
          Length = 785

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I + ++ + + F    + RP  I++ G  G GKT +  K+ +  +   + +     D
Sbjct: 373 IAENMLQVVREFTTKRNLRPVKIIIHGPPGSGKTHLAKKMCEYYNSKYVSIPTMLED 429


>gi|37528059|ref|NP_931404.1| hypothetical protein plu4223 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787496|emb|CAE16595.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 893

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 70/215 (32%), Gaps = 49/215 (22%)

Query: 53  LIRSDIGVAVAQKIVEE-----------------------LLTKRYAKDVSVQRVLYDVS 89
           L+ SD+ V     ++ +                       L  +   ++ +++ +   + 
Sbjct: 541 LLSSDVDVRSVATVIADWTGVPLSSLLKDEQTGLLHLEQHLGERVVGQEAALREIAQRLR 600

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGD 148
                 L P   P          V L+VG +GVGKT T +  L+  +      ++     
Sbjct: 601 AA-KTGLTPEQGPLG--------VFLLVGPSGVGKTETALA-LADNLFGGARSLITINLS 650

Query: 149 TFR-SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
            ++    + QLK              +G     +  EA    + +   V+++D   + H 
Sbjct: 651 EYQEPHTVSQLKGSP--------PGYVGYGQGGILTEAV---RKRPYSVVLLDEVEKAHR 699

Query: 208 NS-ILMAG--IGKMIRVLKRLDPHAPHSVLQVLDA 239
           +   L         +R  +  +    H+V+ +   
Sbjct: 700 DVINLFYQVFDRGFMRDGEGREIDFRHTVILMTSN 734


>gi|328850823|gb|EGF99983.1| hypothetical protein MELLADRAFT_45596 [Melampsora larici-populina
           98AG31]
          Length = 364

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 12/107 (11%)

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRV----LKRLDPHAPHSVLQVLDAT-TGQNALRQVEM 251
           ++ DT  +             +       L +       S   VL++  T    L+Q+  
Sbjct: 63  VLKDTEEKYGIRITFSVETEPLDTAGPLALAKDILGKDDSPFFVLNSDVTCSYPLKQLAS 122

Query: 252 FHAVAGTTGLIM-TKMDGTARGGGLIPIVVTHK------IPVYFLGV 291
           FH   G  G IM TK+D  ++ G ++ +  T +       PV F+G 
Sbjct: 123 FHQAHGKEGTIMVTKVDEPSKYGVVVQVPNTTQIDRFVEKPVDFVGN 169


>gi|296331914|ref|ZP_06874379.1| putative ABC transporter (ATP-binding protein) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305673526|ref|YP_003865198.1| putative ABC transporter ATP-binding protein [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296150992|gb|EFG91876.1| putative ABC transporter (ATP-binding protein) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305411770|gb|ADM36889.1| putative ABC transporter (ATP-binding protein) [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 604

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I  VG  G GKTTV   L++       ++++   D
Sbjct: 395 IAFVGPTGAGKTTVTNLLARFYEPDEGRILIDGTD 429


>gi|238918418|ref|YP_002931932.1| ATP-dependent metallopeptidase [Edwardsiella ictaluri 93-146]
 gi|238867986|gb|ACR67697.1| ATP-dependent metallopeptidase [Edwardsiella ictaluri 93-146]
          Length = 649

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  IL+VG  G GKT     L+K ++ 
Sbjct: 156 DVAGCDEAKEEVGELVEYLRDPSR-FQKLGGKIPKGILMVGPPGTGKT----LLAKAIAG 210

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 211 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 254

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 255 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|227530437|ref|ZP_03960486.1| deoxyadenosine kinase [Lactobacillus vaginalis ATCC 49540]
 gi|227349669|gb|EEJ39960.1| deoxyadenosine kinase [Lactobacillus vaginalis ATCC 49540]
          Length = 211

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           VI+  G+ GVGKTT+ GK+++ ++    
Sbjct: 2   VIITAGMIGVGKTTLTGKIAEHLNTKAY 29


>gi|225427908|ref|XP_002276815.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2192

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 38   SRRLDD--GVREEL---EDLLIRSDIG--VAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
             +++DD     +++    ++L   +IG   + + ++++ L       +  V   L + ++
Sbjct: 1457 GKKIDDVQTNLQDISKRREILGIKNIGEGTSTSTQMLQNLRRTTPRAEKHVIVGLNEEAK 1516

Query: 91   LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             + K L             R  VI +VG+ G+GKTT+  K+
Sbjct: 1517 ELVKQLT--------KGDPRRRVISIVGMGGIGKTTLAKKI 1549


>gi|291190224|ref|NP_001167211.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Salmo salar]
 gi|223648684|gb|ACN11100.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Salmo salar]
          Length = 533

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           ++ P VI+++G+   GKT +  KL++ ++  G+   +     +R  A+   K +
Sbjct: 36  TNSPTVIVMIGLPARGKTYMSKKLTRYLNWIGVPTKVFNLGVYRREAVKAYKSY 89


>gi|209966359|ref|YP_002299274.1| arginine/ornithine transport system ATPase [Rhodospirillum centenum
           SW]
 gi|209959825|gb|ACJ00462.1| Lao [Rhodospirillum centenum SW]
          Length = 328

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 58/172 (33%), Gaps = 27/172 (15%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAA--------IDQ 157
           + R   I + GV GVGK+T I      +   G KV + A D  + R+          +++
Sbjct: 51  TGRSTRIGITGVPGVGKSTFIEAFGLHVIGQGHKVAVLAIDPTSQRTGGSILGDKTRMEE 110

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L    D               A    EA    +A   DV+I++T G   + +        
Sbjct: 111 LSRHPDAFIRPSPAGTTLGGVARRTREAMLLVEAAGFDVVIVETVGVGQSETA------- 163

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
                           L +L    G + L+ ++          +++ K DG 
Sbjct: 164 --------VADMVDLFLLLLPP-AGGDELQGIKKGIVELA-DLIVVNKADGD 205


>gi|205374736|ref|ZP_03227530.1| arsenite-translocating ATPase ArsA [Bacillus coahuilensis m4-4]
          Length = 545

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 14/159 (8%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           E     L  L++  N   +H   +I  +G  GVGKTTV   ++  + + G +V L   D 
Sbjct: 265 EEETDNLPRLNEVINDFSTHNTRLIFTMGKGGVGKTTVASAIAVGLVEKGHRVHLTTTD- 323

Query: 150 FRSAAI--DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
              AA    Q +      +          +      E   +A         +D  G  + 
Sbjct: 324 --PAAHLNYQFQSDQVNQNLSISSINPKDEVEKYKSEVLGKASND------LDEEGLAYL 375

Query: 208 NSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
              L         + R    +   +   ++ +  A TG 
Sbjct: 376 EEDLNSPCTEEIAVFRAFAEVVAKSEDEIVVIDTAPTGH 414


>gi|170116140|ref|XP_001889262.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164635753|gb|EDR00056.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1423

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 12/148 (8%)

Query: 61  AVAQKIVEE-LLTKRYAKDVSVQRVLYDVSELIHK---------MLMPLSKPFNWDFSHR 110
             A++I ++    +    + +  R +++   L  +         +L  ++K  N   S  
Sbjct: 269 QTARQIQDDTKRERLNPSEKADHRTVFEGHGLKREACTDGTRVKILEDITKWANDCSSAS 328

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           P V  + G  G GKTT+   ++K  +      +  +  G+ F S   ++ +         
Sbjct: 329 PRVFWLTGQAGSGKTTIAYTIAKVFAQDANPNQHTVLGGNFFCSRQFEETRAQTRILPTI 388

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                      A A     +  + K DV
Sbjct: 389 AYQFARKCKPYADALHDADKFDSVKFDV 416


>gi|126662408|ref|ZP_01733407.1| Deoxynucleoside kinase subfamily, putative [Flavobacteria bacterium
           BAL38]
 gi|126625787|gb|EAZ96476.1| Deoxynucleoside kinase subfamily, putative [Flavobacteria bacterium
           BAL38]
          Length = 204

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 7/66 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG---DTFRSAAIDQLKIWADRTSADFV 170
           I V G  G GKTT+   L+K          +      D F      Q++ W+      F+
Sbjct: 3   IAVAGNIGAGKTTLTKLLAKHFKWEPHFEDVVDNPYLDDF----YHQMERWSFNLQIYFL 58

Query: 171 CSEIGS 176
            S    
Sbjct: 59  NSRFRQ 64


>gi|145500528|ref|XP_001436247.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403386|emb|CAK68850.1| unnamed protein product [Paramecium tetraurelia]
          Length = 652

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 22/165 (13%)

Query: 85  LYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +  E + ++L  L  P  F    +  P  IL+VG  G GKT     L++ ++      
Sbjct: 226 IDEFREELEEILQYLKNPDKFTQSGAKLPKGILLVGPPGSGKT----LLARALAGE---- 277

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
                     A     +         FV                       +D   ID+ 
Sbjct: 278 ----------AGCSFFQKSGSEFDEMFVGVGAQRVRELFQNARKSSPSIIFIDE--IDSI 325

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           G     +   A    + ++L  +D    +  + V+ AT  +  L 
Sbjct: 326 GGRRKMNDPTASRDTINQILTEMDGFKQNDGIIVIGATNFEQVLD 370


>gi|114046590|ref|YP_737140.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-7]
 gi|113888032|gb|ABI42083.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-7]
          Length = 657

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   K    DV+      +  + +   L   +K F       P  +L+VG  G GK
Sbjct: 150 KLMSEDQIKTTFADVAGCDEAKEEVKELVDYLRDPTK-FQKLGGRIPTGVLMVGPPGTGK 208

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 209 T----LLAKAIAGESKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 249

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 250 AKKSAPCIIF-IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN 308

Query: 242 GQNALRQV 249
             + L   
Sbjct: 309 RPDVLDSA 316


>gi|117919472|ref|YP_868664.1| membrane protease FtsH catalytic subunit [Shewanella sp. ANA-3]
 gi|117611804|gb|ABK47258.1| membrane protease FtsH catalytic subunit [Shewanella sp. ANA-3]
          Length = 657

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   K    DV+      +  + +   L   +K F       P  +L+VG  G GK
Sbjct: 150 KLMSEDQIKTTFADVAGCDEAKEEVKELVDYLRDPTK-FQKLGGRIPTGVLMVGPPGTGK 208

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 209 T----LLAKAIAGESKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 249

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 250 AKKSAPCIIF-IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN 308

Query: 242 GQNALRQV 249
             + L   
Sbjct: 309 RPDVLDSA 316


>gi|68470312|ref|XP_720660.1| hypothetical protein CaO19.11697 [Candida albicans SC5314]
 gi|68470573|ref|XP_720532.1| hypothetical protein CaO19.4221 [Candida albicans SC5314]
 gi|46442404|gb|EAL01693.1| hypothetical protein CaO19.4221 [Candida albicans SC5314]
 gi|46442539|gb|EAL01827.1| hypothetical protein CaO19.11697 [Candida albicans SC5314]
          Length = 564

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 81/265 (30%), Gaps = 48/265 (18%)

Query: 60  VAVAQKIVEELLTKRYAK---DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
               +  +E + T+   +   ++ +      VSE   ++     +      S   H +L+
Sbjct: 89  PEAVEDDIETVKTQILDQLNGNLQIFSSTPSVSEKYSEIYSIFERTIKDKES---HSVLM 145

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           VG    GKTT I K + K  +   K                     +  S     S    
Sbjct: 146 VGPRSSGKTT-IVKSALKELNGNYK--------------------GEFISIYLNSSVQTD 184

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV 236
           D++AL   A +     K DV      G   ++  L           K+       ++L V
Sbjct: 185 DSSALREIARQLDINVKKDV-----GGYGSDSMELTNEKIGYANFEKKSINDTFSNILSV 239

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLI--MTKMDGTARGG---GLIPIVVTHKIPVYFLGV 291
           L +  G                  +I    K    +R      L+ I  +   P+  +G+
Sbjct: 240 LTSNKGDRD--------ERMPLVFVIDEFEKFTVDSRQTLLYNLLDISQSSATPLCVVGL 291

Query: 292 GEGI---NDLEPFVAKDFSAVITGC 313
              I     LE  V+  FS  +   
Sbjct: 292 TTKITTKEALEKRVSSRFSQRVISL 316


>gi|320586216|gb|EFW98895.1| peptidase s16 [Grosmannia clavigera kw1407]
          Length = 987

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 21/116 (18%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKD- 78
           G      +L E +  +    RL   V EE+       D+     Q+ +E+   +   +  
Sbjct: 438 GLEKVKKRLLEYLAVL----RLKQSVNEEI-------DVEAKTIQQELEQAQARMAEETD 486

Query: 79  ---------VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
                     +         + +   +  L +        +  ++L+VG  GVGKT
Sbjct: 487 ESAQMAESAQTTTEAHKAAQQQVETAMARLDELQKRRMLDKSPILLLVGPPGVGKT 542


>gi|167039017|ref|YP_001662002.1| ABC transporter-like protein [Thermoanaerobacter sp. X514]
 gi|300913393|ref|ZP_07130710.1| ABC transporter related protein [Thermoanaerobacter sp. X561]
 gi|307723592|ref|YP_003903343.1| ABC transporter-like protein [Thermoanaerobacter sp. X513]
 gi|166853257|gb|ABY91666.1| ABC transporter related [Thermoanaerobacter sp. X514]
 gi|300890078|gb|EFK85223.1| ABC transporter related protein [Thermoanaerobacter sp. X561]
 gi|307580653|gb|ADN54052.1| ABC transporter related protein [Thermoanaerobacter sp. X513]
          Length = 303

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           ++G NG GKTT I  ++  +     K+++   D F           AD      +  E  
Sbjct: 34  LIGPNGAGKTTTIKLIAGLLKVDSGKILVNGRDPF--------TQHADALKEVGILIEPQ 85

Query: 176 SDAAALAYEAFKQ-AQAKKVDVLIIDT 201
                 AYE     + A  +D   ID+
Sbjct: 86  FFPYLTAYENLAYLSSAMGLDKHQIDS 112


>gi|46201533|ref|ZP_00054863.2| COG0003: Oxyanion-translocating ATPase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 574

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 14/163 (8%)

Query: 96  LMPLSKPFNWDFSHRPHVILV-VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           L    +    + +   H +++ +G  GVGKT+V   ++  ++  G +V L+  D    AA
Sbjct: 309 LPGGLEALVAEIADGGHGVVMTMGKGGVGKTSVAAAIAIILARQGHQVTLSTTD---PAA 365

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM-- 212
             Q  +            +   + A    E   +A         +D AGR      L   
Sbjct: 366 HVQDAVEGKVRGLTVTRIDPEWEVARYRDEVLAKAGGD------LDMAGRAMLEEDLRSP 419

Query: 213 --AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
               I       + +D      V+     T     L      +
Sbjct: 420 CTEEIAVFRAFSRTVDEGKDRFVILDTAPTGHTILLLDAAEAY 462


>gi|325968597|ref|YP_004244789.1| hypothetical protein VMUT_1081 [Vulcanisaeta moutnovskia 768-28]
 gi|323707800|gb|ADY01287.1| hypothetical protein VMUT_1081 [Vulcanisaeta moutnovskia 768-28]
          Length = 234

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           I+++G  G GKTT+   L +K+   G +  +   
Sbjct: 2   IVLIGPQGSGKTTLAKLLVEKLRAQGFRPCIVKM 35


>gi|317493620|ref|ZP_07952041.1| ATP-dependent metallopeptidase HflB [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918563|gb|EFV39901.1| ATP-dependent metallopeptidase HflB [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 648

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L  P  +       P  IL+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLRDPSRFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|262190514|ref|ZP_06048759.1| adenylylsulfate kinase [Vibrio cholerae CT 5369-93]
 gi|262033610|gb|EEY52103.1| adenylylsulfate kinase [Vibrio cholerae CT 5369-93]
          Length = 215

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + L  ++ AK   V   L+ V +     L             RP V+   G++G GK+TV
Sbjct: 6   DSLRFEQDAKPEHVVWHLHAVDKAQRAALKQ----------QRPAVLWFTGLSGAGKSTV 55

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSA 153
            G L  +++  G    L  GD  R  
Sbjct: 56  AGALENRLAALGYHTYLLDGDNVRHG 81


>gi|219685785|ref|ZP_03540595.1| ATP-dependent Clp protease, subunit C [Borrelia garinii Far04]
 gi|219672670|gb|EED29699.1| ATP-dependent Clp protease, subunit C [Borrelia garinii Far04]
          Length = 739

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL---YDVSELIHKMLMPL 99
           D +++ + ++L      +     I EE+L  +  +    Q+V+   + VSELI +++   
Sbjct: 410 DDIQKAISEIL-----SIKTTNNIKEEILELKEVEIKINQKVIGQKHAVSELIKEIIK-- 462

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            K    D S     IL++G NG GKTT+ 
Sbjct: 463 VKLGLNDDSKPLTSILLIGSNGCGKTTLT 491


>gi|147818353|emb|CAN71460.1| hypothetical protein VITISV_033508 [Vitis vinifera]
          Length = 855

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 86/260 (33%), Gaps = 64/260 (24%)

Query: 18  TKGFASTSLKL----KEGITDIISSRRLDDGVREELEDLLIRSDIGV------------- 60
            +    +  +        + DI+   +  +          I +D  V             
Sbjct: 119 KQSMNKSRQRFWELAGSKLGDILGVEKTAEQ---------IDADTAVVGEEGEVDFKEDA 169

Query: 61  AVAQKIV--EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             AQ +   E +     +K ++ QR    +  +  ++L  + +           V++VVG
Sbjct: 170 KFAQHLKKDEAVSEFAKSKTLAEQRQYLPIYSVREELLQVIRE---------NQVVVVVG 220

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTSADF------- 169
             G GKTT   +L++ + + G       G T   R AA+   K  ++    +        
Sbjct: 221 ETGSGKTT---QLTQYLHEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYA 277

Query: 170 VCSEIGSDAA---------ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
           +  E  +             L  E  K ++  K  V+++D A     N+        +  
Sbjct: 278 IRFEDVTGPNTKIKYMTDGVLMRETLKDSELDKYRVVVMDEAHERSLNTD------VLFG 331

Query: 221 VLKRLDPHAPHSVLQVLDAT 240
           +LK++        L V  AT
Sbjct: 332 ILKKVVAQRRDFKLIVTSAT 351


>gi|108799769|ref|YP_639966.1| urease accessory protein UreG [Mycobacterium sp. MCS]
 gi|119868879|ref|YP_938831.1| urease accessory protein UreG [Mycobacterium sp. KMS]
 gi|126435410|ref|YP_001071101.1| urease accessory protein UreG [Mycobacterium sp. JLS]
 gi|123070107|sp|Q1B874|UREG_MYCSS RecName: Full=Urease accessory protein ureG
 gi|226732035|sp|A3Q0D3|UREG_MYCSJ RecName: Full=Urease accessory protein ureG
 gi|226732036|sp|A1UGT3|UREG_MYCSK RecName: Full=Urease accessory protein ureG
 gi|108770188|gb|ABG08910.1| urease accessory protein UreG [Mycobacterium sp. MCS]
 gi|119694968|gb|ABL92041.1| urease accessory protein UreG [Mycobacterium sp. KMS]
 gi|126235210|gb|ABN98610.1| urease accessory protein UreG [Mycobacterium sp. JLS]
          Length = 230

 Score = 38.7 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 68/215 (31%), Gaps = 33/215 (15%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            +P        P  I V G  G GKT ++  L +++ D  L + +   D + +   D L+
Sbjct: 19  DRPKRVRTPGEPLRIGVGGPVGSGKTALVAALCRQLRDE-LSLAVLTNDIYTTEDADFLR 77

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             A          + G        +          D++    AG  H + IL+   G  +
Sbjct: 78  RHAVLPDDRIAAVQTGGCPHTAIRDDITANLDAIDDLV----AGHDHLDLILVESGGDNL 133

Query: 220 ----------------------RVLKRLDPHAPHSVLQVLDATT----GQNALRQVEMFH 253
                                 +V ++  P    S L V++ T         L  +    
Sbjct: 134 TATFSSGLVDVQIFVVDVAGGDKVPRKGGPGVTFSDLLVINKTDLAPMVGADLDVMRRDS 193

Query: 254 -AVAGTTGLIMTKMDGTARGGGLIP-IVVTHKIPV 286
             V G    ++  +      G ++  +    ++PV
Sbjct: 194 TKVRGERPFVLISLTADPTAGPVLDWVRAQLRVPV 228


>gi|292486829|ref|YP_003529699.1| cell division protein FtsH [Erwinia amylovora CFBP1430]
 gi|291552246|emb|CBA19283.1| cell division protein FtsH [Erwinia amylovora CFBP1430]
 gi|312170897|emb|CBX79156.1| cell division protein FtsH [Erwinia amylovora ATCC BAA-2158]
          Length = 647

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      D    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 156 DVAGCDEAKDEVSELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 210

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 211 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 254

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 255 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|292900772|ref|YP_003540141.1| cell division protein [Erwinia amylovora ATCC 49946]
 gi|291200620|emb|CBJ47752.1| cell division protein [Erwinia amylovora ATCC 49946]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      D    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 153 DVAGCDEAKDEVSELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 208 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 251

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|260596195|ref|YP_003208766.1| ATP-dependent metalloprotease [Cronobacter turicensis z3032]
 gi|260215372|emb|CBA27389.1| Cell division protease ftsH [Cronobacter turicensis z3032]
          Length = 647

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|242398603|ref|YP_002994027.1| Cell division inhibitor minD like protein [Thermococcus sibiricus
           MM 739]
 gi|242264996|gb|ACS89678.1| Cell division inhibitor minD like protein [Thermococcus sibiricus
           MM 739]
          Length = 252

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI+V G  G GKTT    LS        + +   GD F       L       +  +  
Sbjct: 2   PVIIVTGRGGAGKTTTTANLSVYFGQKDYRTLAIDGDLFLPN----LGFHFALENVSYTL 57

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVL 197
             I  +       A  + +   V+V+
Sbjct: 58  HSILKNPDVDPEWAIYKHEKTAVNVM 83


>gi|225017163|ref|ZP_03706355.1| hypothetical protein CLOSTMETH_01088 [Clostridium methylpentosum
           DSM 5476]
 gi|224950082|gb|EEG31291.1| hypothetical protein CLOSTMETH_01088 [Clostridium methylpentosum
           DSM 5476]
          Length = 218

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT----FRSAAIDQL 158
           + +V G  G GKT     L+  ++  G +V +   DT    FR+A  +QL
Sbjct: 9   ISVVTGHYGSGKTNFSVNLALWLARQGKRVCVVDLDTVNPYFRTADYEQL 58


>gi|222628834|gb|EEE60966.1| hypothetical protein OsJ_14736 [Oryza sativa Japonica Group]
          Length = 565

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 64  QKIVEELLTKRYA---KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            + + E+  K  A   K V      +DV+      + P+    N         I  VG +
Sbjct: 317 TRFIPEVRDKATAVHLKYVKGDINFHDVTFQYIDGMPPILDGVNLHIRSGET-IAFVGPS 375

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           G GKTT+   L +      +    A  +
Sbjct: 376 GGGKTTLAKLLLRLYQPQSVASWSATTE 403


>gi|191172189|ref|ZP_03033732.1| ATP-dependent metallopeptidase HflB [Escherichia coli F11]
 gi|190907499|gb|EDV67095.1| ATP-dependent metallopeptidase HflB [Escherichia coli F11]
          Length = 647

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|184155821|ref|YP_001844161.1| deoxyguanosine kinase [Lactobacillus fermentum IFO 3956]
 gi|227515585|ref|ZP_03945634.1| deoxyguanosine kinase [Lactobacillus fermentum ATCC 14931]
 gi|260663462|ref|ZP_05864352.1| deoxyguanosine kinase [Lactobacillus fermentum 28-3-CHN]
 gi|183227165|dbj|BAG27681.1| deoxyguanosine kinase [Lactobacillus fermentum IFO 3956]
 gi|227086015|gb|EEI21327.1| deoxyguanosine kinase [Lactobacillus fermentum ATCC 14931]
 gi|260552003|gb|EEX25056.1| deoxyguanosine kinase [Lactobacillus fermentum 28-3-CHN]
          Length = 210

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDA 138
           VI+  G+ GVGKTT+  K+++ ++  
Sbjct: 2   VIITAGMIGVGKTTLTAKIAEHLNTK 27


>gi|170766096|ref|ZP_02900907.1| ATP-dependent metallopeptidase HflB [Escherichia albertii TW07627]
 gi|170125242|gb|EDS94173.1| ATP-dependent metallopeptidase HflB [Escherichia albertii TW07627]
          Length = 647

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|209901221|ref|YP_002287002.1| arsenical pump-driving ATPase [Klebsiella pneumoniae]
 gi|260712919|ref|YP_003226974.1| arsenite-activated ATPase ArsA [Zymomonas mobilis subsp. mobilis
           NCIB 11163]
 gi|149850120|emb|CAG29011.1| ArsA [Klebsiella pneumoniae]
 gi|209574172|gb|ACI63060.1| arsenical pump-driving ATPase [Klebsiella pneumoniae]
 gi|258553445|gb|ACV76390.1| arsenite-activated ATPase ArsA [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 583

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++  ++D G  V L   D    AA     +     +       
Sbjct: 330 IMLMGKGGVGKTTMAAAIAVSLADKGFDVHLTTSD---PAAHLSTTLNGSLKNLQVSRIN 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    K  D+   D AG+      L +   + I V + 
Sbjct: 387 PHDETERYRQHVLE---TKGRDL---DEAGKRLLEEDLRSPCTEEIAVFQA 431


>gi|111221540|ref|YP_712334.1| adenosine 5'-phosphosulfate kinase [Frankia alni ACN14a]
 gi|111149072|emb|CAJ60755.1| adenosine 5'-phosphosulfate kinase (partial match) [Frankia alni
           ACN14a]
          Length = 642

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTFRS 152
             S R   I   G++G GK+T+ G L  + +   G ++ L  GD  R+
Sbjct: 459 PRSQRGLTIFFTGLSGSGKSTLAGLLVCRLLEQGGRRITLLDGDVVRA 506


>gi|300980089|ref|ZP_07174839.1| ATP-dependent metalloprotease [Escherichia coli MS 200-1]
 gi|300307863|gb|EFJ62383.1| ATP-dependent metalloprotease [Escherichia coli MS 200-1]
 gi|324012133|gb|EGB81352.1| ATP-dependent metalloprotease [Escherichia coli MS 60-1]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|37528354|ref|NP_931699.1| ATP-dependent metalloprotease [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787792|emb|CAE16907.1| cell division protein [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 653

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  F       P  IL+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVGELVEYLREPGRFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|89074582|ref|ZP_01161054.1| hypothetical protein SKA34_11965 [Photobacterium sp. SKA34]
 gi|89049686|gb|EAR55245.1| hypothetical protein SKA34_11965 [Photobacterium sp. SKA34]
          Length = 178

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 18/179 (10%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG------------DTFRS-- 152
            +    +I  VG +G GKTT++ K+   +   G+++ L               D++R   
Sbjct: 4   ITSPTPLIGFVGFSGSGKTTLLEKVIPLLKQRGIRLGLIKHSHHDIEPDLPGKDSYRLRH 63

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
           A   Q  +        +              +   Q    K+D+++I         +   
Sbjct: 64  AGCGQTLLATKSRHMLYFEYPEDERKDPELNDCLDQLDHSKLDIVLI---EGFREQAFPK 120

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
             I +       L P+ PH +    DA T    L Q    +        I+T ++   +
Sbjct: 121 IEIHRPSYNKPLLYPNDPHIIAFATDADTQLCQLPQ-LDINNPQSIAQFILTWLEENGQ 178


>gi|116753824|ref|YP_842942.1| cobyrinic acid a,c-diamide synthase [Methanosaeta thermophila PT]
 gi|116665275|gb|ABK14302.1| Cobyrinic acid a,c-diamide synthase [Methanosaeta thermophila PT]
          Length = 249

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-----TFRSAAIDQLKIWADRTS 166
           IL+ G  G GK+TV   L+++++  G +V++   D      +R    DQ K + +   
Sbjct: 3   ILICGKGGSGKSTVSALLAREIAGRGTRVLVVDADESNFGIYRMLGFDQPKDFMESLG 60


>gi|332975520|gb|EGK12410.1| ATP-dependent Clp protease [Desmospora sp. 8437]
          Length = 722

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 15/142 (10%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L  +   + +     +  V++ I +    L K      S      L VG  GVGKT 
Sbjct: 421 MKDLPDRLNRQVIGQAEAVRKVAKAIRRNRAGLRKGTRPIGS-----FLFVGPTGVGKTE 475

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           +   L++     G +  +   D          +     + +  + S  G      A +  
Sbjct: 476 LAKTLAR--EMFGKEDAMIRLDMS--------EYMEKHSVSKLIGSPPGYVGHEEAGQLT 525

Query: 187 KQAQAKKVDVLIIDTAGRLHNN 208
           +Q + K   +L++D   + H +
Sbjct: 526 EQVRRKPYSILLLDEIEKAHPD 547


>gi|320174542|gb|EFW49678.1| Cell division protein FtsH [Shigella dysenteriae CDC 74-1112]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|313836941|gb|EFS74655.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL037PA2]
 gi|314929468|gb|EFS93299.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL044PA1]
 gi|314971447|gb|EFT15545.1| ABC transporter, ATP-binding protein [Propionibacterium acnes
           HL037PA3]
 gi|328906872|gb|EGG26638.1| ABC transporter, ATP-binding protein [Propionibacterium sp. P08]
          Length = 264

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 106 DFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
               RP V+ +++G+NG GKTT++  L+        +V L   D  R  
Sbjct: 29  SVEIRPQVMSMIIGLNGSGKTTLLHLLAGLRKPGEGRVWLGKRDLARIG 77


>gi|295107439|emb|CBL04982.1| ATPases involved in chromosome partitioning [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 254

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+   +  GL+ +L   D  +++A D   ++    S      E+    A 
Sbjct: 12  GVGKTTTAVNLAAIFAARGLRTLLVDLDP-QASATDFFGLYDRAASERRTSVELLYGGAP 70

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA- 239
           +  E    A  + +DV+   T   +  N +L+        +    D    + V  +  + 
Sbjct: 71  V--EEVAYAAGESLDVVAS-TIDLVDQNEMLLREQRLKFALD---DASGSYDVCLIDCSP 124

Query: 240 TTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI------PIVVTHKIP 285
              + A           G   +I  K+D T   G  +       I    ++P
Sbjct: 125 VMRRLAFNAYLAAAE--GGMVVIPVKLDSTVMRGTALTVEATRSISDALRMP 174


>gi|253583795|ref|ZP_04860993.1| primosomal protein N [Fusobacterium varium ATCC 27725]
 gi|251834367|gb|EES62930.1| primosomal protein N [Fusobacterium varium ATCC 27725]
          Length = 773

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGV-----REELEDLLIRSDIGVAVAQKIVEE--LLTKR 74
              S+KL           + +D V     +EE++   + S     +  K++ E  L+ K+
Sbjct: 165 EKGSVKLNYDFDFSNLKEKFEDAVVYFQKKEEVQKKNLESKFSKELINKLIREKLLILKK 224

Query: 75  YAKDVSVQRVLYDVSELIHK----MLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
             K+   QR ++++SE + +    +     K      +      L+ G+ G GKT
Sbjct: 225 NIKEDENQREIHEISEEVSEKNVVLNEEQEKAKEIIKNGDNKYYLLKGITGSGKT 279


>gi|238751684|ref|ZP_04613173.1| hypothetical protein yrohd0001_18110 [Yersinia rohdei ATCC 43380]
 gi|238710094|gb|EEQ02323.1| hypothetical protein yrohd0001_18110 [Yersinia rohdei ATCC 43380]
          Length = 880

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 50/224 (22%)

Query: 53  LIRSDIGVAVAQKIVEE-----------------------LLTKRYAKDVSVQRVLYDVS 89
           L+  D+ V     ++ +                       L T+   ++V++  +   + 
Sbjct: 540 LLSLDVDVRTVATVIADWTGVPLSSLLKDEQTDLLQLERHLATRVVGQEVALLDMAQRLR 599

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGD 148
                 L P + P          V L+VG +GVGKT T +  L+  +      ++     
Sbjct: 600 AA-KTGLTPENGPLG--------VFLLVGPSGVGKTETALA-LADTLFGGEKSLITINMS 649

Query: 149 TFRSA-AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
            ++ A  + QLK              +G     +  EA    + +   V+++D   + H 
Sbjct: 650 EYQEAHTVSQLKGSP--------PGYVGYGQGGILTEAV---RKRPYSVVLLDEVEKAHA 698

Query: 208 NS-ILMAG--IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           +   L        M+R  +  +    ++V+  + A  G + L Q
Sbjct: 699 DVINLFYQVFDRGMMRDGEGREIDFRNTVIL-MTANLGSDLLMQ 741


>gi|307154233|ref|YP_003889617.1| cobyrinic acid ac-diamide synthase [Cyanothece sp. PCC 7822]
 gi|306984461|gb|ADN16342.1| Cobyrinic acid ac-diamide synthase [Cyanothece sp. PCC 7822]
          Length = 196

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 50/171 (29%), Gaps = 36/171 (21%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    ++  +       +L   D  RSA                  S   +    
Sbjct: 11  GVGKTTTAIHIAAYLQ-QKAPTLLIDADKNRSA---------------LHWSREDTLPFF 54

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A +A       K   +I DT  R                    L+     S L V+  T
Sbjct: 55  VASQAGSTRLITKYTHIITDTQARPEAEE---------------LEDLVQGSDLLVIPTT 99

Query: 241 TGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGG-GLIPIVVTHKIPV 286
                +        +         +++TK+D   R G      +   K+P+
Sbjct: 100 PNHLDVDVTVKAVELLQPLKANFKILLTKVDARTRNGREARKTLEELKLPI 150


>gi|224534157|ref|ZP_03674737.1| ATP-dependent Clp protease, subunit C [Borrelia spielmanii A14S]
 gi|224514582|gb|EEF84896.1| ATP-dependent Clp protease, subunit C [Borrelia spielmanii A14S]
          Length = 739

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 10/89 (11%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKI---VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           D +++ L ++L      +     I   + EL       +  V    + VSELI +++   
Sbjct: 410 DDIQKALNEIL-----SIKTTNNIKEEISELKEIESKINQKVIGQKHAVSELIKEIIK-- 462

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            K    D S     IL++G NG GKTT+ 
Sbjct: 463 VKLGLNDDSKPLTSILLIGSNGCGKTTLT 491


>gi|10314008|ref|NP_066255.1| non-structural polyprotein [Vesicular exanthema of swine virus]
 gi|81968644|sp|Q9DUN3|POLG_VESVA RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein
           p16; Contains: RecName: Full=Protein p32; Contains:
           RecName: Full=NTPase; AltName: Full=p39; Contains:
           RecName: Full=Protein p30; Contains: RecName: Full=Viral
           genome-linked protein; AltName: Full=VPg; AltName:
           Full=p13; Contains: RecName: Full=Protease-polymerase
           p76; Short=Pro-Pol
 gi|10141010|gb|AAG13641.1| non-structural polyprotein [Vesicular exanthema of swine virus]
          Length = 1881

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 18/131 (13%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA---QKIVEELLTKRYAKDVSVQRVL 85
            E + + +SSR +      EL +  I +DI        Q++ E L  +  +  ++     
Sbjct: 497 NERLVNDLSSRTI---ALTELNNPTITADI--DAVINLQRLAEVLRDEVKSHTLNPLMQP 551

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHR--------PHVILVVGVNGVGKTTVIGKLSKKMSD 137
           Y  + ++  ++  L K  +     +        P  +++ G  G GKTT    L+K++S 
Sbjct: 552 Y--NPILRNLMSALDKVISCCTRRKAIATKRTAPVAVILTGPPGCGKTTAAFALAKRLSQ 609

Query: 138 AGLKVMLAAGD 148
               ++    D
Sbjct: 610 QKPSIISLDVD 620


>gi|28392821|ref|NP_786892.1| putative NTPase protein [Vesicular exanthema of swine virus]
          Length = 356

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 18/131 (13%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA---QKIVEELLTKRYAKDVSVQRVL 85
            E + + +SSR +      EL +  I +DI        Q++ E L  +  +  ++     
Sbjct: 62  NERLVNDLSSRTI---ALTELNNPTITADI--DAVINLQRLAEVLRDEVKSHTLNPLMQP 116

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHR--------PHVILVVGVNGVGKTTVIGKLSKKMSD 137
           Y  + ++  ++  L K  +     +        P  +++ G  G GKTT    L+K++S 
Sbjct: 117 Y--NPILRNLMSALDKVISCCTRRKAIATKRTAPVAVILTGPPGCGKTTAAFALAKRLSQ 174

Query: 138 AGLKVMLAAGD 148
               ++    D
Sbjct: 175 QKPSIISLDVD 185


>gi|145224232|ref|YP_001134910.1| arginine/ornithine transport system ATPase [Mycobacterium gilvum
           PYR-GCK]
 gi|315444567|ref|YP_004077446.1| LAO/AO transporter ATPase [Mycobacterium sp. Spyr1]
 gi|145216718|gb|ABP46122.1| methylmalonyl-CoA mutase metallochaperone MeaB [Mycobacterium
           gilvum PYR-GCK]
 gi|315262870|gb|ADT99611.1| LAO/AO transport system ATPase [Mycobacterium sp. Spyr1]
          Length = 332

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             A+ +++         L  + L+    P + D + R  +    GV GVGK+T I  L  
Sbjct: 19  ALARSITLVESTRADHRLRAQELLLELTPTSSDAATRVGI---TGVPGVGKSTTIEALGI 75

Query: 134 KMSDAGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAY 183
            + + G +V + A D  + R+          + +L +  D        S      A    
Sbjct: 76  HLIERGHRVAVLAVDPSSTRTGGSILGDKTRMAKLAVHPDAYIRPSPTSGTLGGVAKATR 135

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNN 208
           E     +A   DV++++T G   + 
Sbjct: 136 ETIVLLEAAGYDVVLVETVGVGQSE 160


>gi|326426966|gb|EGD72536.1| Mdn1 protein [Salpingoeca sp. ATCC 50818]
          Length = 6667

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 41/178 (23%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKM-----------------SDAGLKVMLAA------GDTF 150
           +L+VG  G GKTT + KL++ +                    G K +          DTF
Sbjct: 710 VLLVGETGTGKTTAVQKLARSLCKRLVVINMSQQSDVVDLLGGYKPVDVRVLIQPALDTF 769

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI-IDTA---GRLH 206
           R       + ++ + +A+F+     S A        K  Q+  V+V   +DTA   G   
Sbjct: 770 RQL---FFQTFSRKRNAEFMAQLERSFARKKWRALLKGMQSAMVNVRKRMDTAREEGPAT 826

Query: 207 NNSILMAGIGK-MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           +++     +   ++   +  D    H  +QV           Q E   A +   G ++
Sbjct: 827 DDASARNLMKPALMSQWEEFDAALEHLCIQV----------EQAENSFAFSFVEGTLV 874


>gi|113969363|ref|YP_733156.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-4]
 gi|113884047|gb|ABI38099.1| membrane protease FtsH catalytic subunit [Shewanella sp. MR-4]
          Length = 657

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   K    DV+      +  + +   L   +K F       P  +L+VG  G GK
Sbjct: 150 KLMSEDQIKTTFADVAGCDEAKEEVKELVDYLRDPTK-FQKLGGRIPTGVLMVGPPGTGK 208

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 209 T----LLAKAIAGESKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 249

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 250 AKKSAPCIIF-IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN 308

Query: 242 GQNALRQV 249
             + L   
Sbjct: 309 RPDVLDSA 316


>gi|326911078|ref|XP_003201889.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           3-like, partial [Meleagris gallopavo]
          Length = 485

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+   
Sbjct: 4   QLANSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKHY 56


>gi|326317458|ref|YP_004235130.1| ATP-dependent helicase HrpA [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374294|gb|ADX46563.1| ATP-dependent helicase HrpA [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 1391

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 28/188 (14%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI+V G  G GKTT + K++  ++    K     G+  R     Q +  A  + A  + 
Sbjct: 58  QVIIVCGETGSGKTTQLPKIA--LALGRGKCNAKPGEKGRLIGHTQPRRIAASSVAKRIA 115

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLDPHA 229
            E+ +    +     +       D L  D + +L  + IL+A      ++     +    
Sbjct: 116 EELQTPLGDVVGYKVR-----FQDRLSRDASVKLMTDGILLAETQTDPLLTAYDTIIIDE 170

Query: 230 PHSVLQVLDATTGQNALRQV-------EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            H     +D   G   LRQ+       ++    A        K   +A+G          
Sbjct: 171 AHERSLNIDFLLGY--LRQILPRRPDLKIVVTSATIDAERFAKHFESAKGPA-------- 220

Query: 283 KIPVYFLG 290
             PV ++ 
Sbjct: 221 --PVIYVS 226


>gi|309811209|ref|ZP_07705001.1| chain length determinant protein [Dermacoccus sp. Ellin185]
 gi|308434821|gb|EFP58661.1| chain length determinant protein [Dermacoccus sp. Ellin185]
          Length = 471

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 27/123 (21%)

Query: 106 DFSHRPHVILVVG-VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS------------ 152
           D +  P VI V   + G GKTT    L+  ++++G  V L  GD  R             
Sbjct: 256 DATEHPRVITVTSSLPGEGKTTTTANLALALAESGASVCLIEGDLRRPRLLSYMGLEGGV 315

Query: 153 ----------AAIDQLKIWADRTSADFVCSEIGSDAAAL----AYEAFKQAQAKKVDVLI 198
                     A  D ++ + +R            + + L       A  +    + D +I
Sbjct: 316 GLTDVLIGRVAVRDVVQRFGERRLMVLGSGATPPNPSELLGSEPMRAMLEDLRGRFDYVI 375

Query: 199 IDT 201
           ID 
Sbjct: 376 IDA 378


>gi|300921180|ref|ZP_07137556.1| arsenite-transporting ATPase [Escherichia coli MS 115-1]
 gi|300411866|gb|EFJ95176.1| arsenite-transporting ATPase [Escherichia coli MS 115-1]
          Length = 585

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 25/159 (15%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ++ +G  GVGKTTV   ++  ++  G KV L   D    AA     +     +      +
Sbjct: 331 VMAMGKGGVGKTTVAASIAVSLAKRGHKVHLTTSD---PAAHLSYTLDGSLPNLQVSRID 387

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-------RVLKRLD 226
              +         +           +D  G       L +   + I       R++K  D
Sbjct: 388 PKVETERYRRFVLENQGKG------LDAEGLAVLEEDLRSPCTEEIAVFQAFSRIIKEAD 441

Query: 227 PHAPH-------SVLQVLDAT--TGQNALRQVEMFHAVA 256
            H            L +LDAT    +  +RQ+   H   
Sbjct: 442 DHFVIMDTAPTGHTLLLLDATGAYHREMVRQMGQTHDHV 480


>gi|294634508|ref|ZP_06713043.1| ATP-dependent metallopeptidase HflB [Edwardsiella tarda ATCC 23685]
 gi|291092022|gb|EFE24583.1| ATP-dependent metallopeptidase HflB [Edwardsiella tarda ATCC 23685]
          Length = 657

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  IL+VG  G GKT     L+K ++ 
Sbjct: 153 DVAGCDEAKEEVGELVEYLRDPSR-FQKLGGKIPKGILMVGPPGTGKT----LLAKAIAG 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 208 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 251

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|315505545|ref|YP_004084432.1| abc transporter related protein [Micromonospora sp. L5]
 gi|315412164|gb|ADU10281.1| ABC transporter related protein [Micromonospora sp. L5]
          Length = 645

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            R  VI +VG NG GKTT+   ++      G  +     D
Sbjct: 415 RRGEVIALVGENGSGKTTLAKLIAGLYRPTGGTIRWDGVD 454


>gi|229492118|ref|ZP_04385927.1| anion-transporting ATPase [Rhodococcus erythropolis SK121]
 gi|229320906|gb|EEN86718.1| anion-transporting ATPase [Rhodococcus erythropolis SK121]
          Length = 393

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           +++  G  GVGKTT    L+ + ++ G +V++   D  R  A
Sbjct: 37  IVVCCGAGGVGKTTTAASLALRAAEEGRRVVVLTIDPARRLA 78


>gi|220903408|ref|YP_002478720.1| Adenylylsulfate kinase and related kinase-like protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219867707|gb|ACL48042.1| Adenylylsulfate kinase and related kinase-like protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 199

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 15/114 (13%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF-RSAAIDQLKIWADRTSADFV 170
            VI ++G++G GKTT+   +   +   G++      D F R A +D +            
Sbjct: 3   PVIWLLGLSGSGKTTLGSLVRLFLEGQGVETEFIDEDHFCRRAGLDGIA----------- 51

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDT--AG-RLHNNSILMAGIGKMIRV 221
             E  +   AL  +A +     +V V+   T  +G R  N   L       +R 
Sbjct: 52  PGERITAINALRDQALQHHAQGRVCVVAATTPYSGMRQKNRENLPLYHEVWVRC 105


>gi|167837238|ref|ZP_02464121.1| adenylylsulfate kinase [Burkholderia thailandensis MSMB43]
          Length = 200

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V+ + G+ G GKTT    L  ++ + G K ++  GD  R+ 
Sbjct: 14  PVVWMTGLPGAGKTTTANALLNRLIEGGAKAVVLDGDALRAG 55


>gi|254302350|ref|ZP_04969708.1| possible MRP family nucleotide-binding protein [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322542|gb|EDK87792.1| possible MRP family nucleotide-binding protein [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 257

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 96  LMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++P   P   +  +  +VI ++ G  GVGK+TV   L+K++   G  V +   D
Sbjct: 1   MIPKDAPKVSEDKNIKNVIAVMSGKGGVGKSTVTTLLAKELRKKGYSVGVLDAD 54


>gi|118081939|ref|XP_416472.2| PREDICTED: similar to
           6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
           [Gallus gallus]
          Length = 514

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+   
Sbjct: 31  QLANSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKHY 83


>gi|90419875|ref|ZP_01227784.1| ATP-binding protein, ABC-type nitrate/sulfonate/bicarbonate
           transporter [Aurantimonas manganoxydans SI85-9A1]
 gi|90335916|gb|EAS49664.1| ATP-binding protein, ABC-type nitrate/sulfonate/bicarbonate
           transporter [Aurantimonas manganoxydans SI85-9A1]
          Length = 588

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 2/150 (1%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           + +VG +G GKTT+I  L+  +     +V++             L   +           
Sbjct: 41  VAIVGFSGSGKTTLISLLAGLIRPDAGQVLMRGAQVTGPGPERGLVFQSYSLMPWLTVRG 100

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG--IGKMIRVLKRLDPHAPH 231
             + A    +    +A  K      ID  G  H      A    G   RV          
Sbjct: 101 NVALAVDTVFARETKACRKARVDRYIDMVGLAHAVDRKPAELSGGMRQRVSVARALAMSP 160

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
            +L + +  +  +AL + ++    A  + +
Sbjct: 161 EILLLDEPLSALDALTRAKLQDEFAAISQV 190


>gi|42741719|gb|AAS45117.1| ATPase subunit [Alcaligenes faecalis]
          Length = 591

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 65/168 (38%), Gaps = 21/168 (12%)

Query: 58  IGVAVAQKIVEELLTKRYAK-DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           +G+   ++++ +L  +  A  D  ++     V+ELI  +            +    ++++
Sbjct: 288 VGLEALRQLLTDLPPQAPAAVDSPIELDEPSVAELIDGI-----------AADGHGLVML 336

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT+   ++ +++  GL V L   D    AA     + +   +      +  +
Sbjct: 337 MGKGGVGKTTLAAAIAVELAHRGLPVHLTTSD---PAAHLTDTLDSSLDNLTVSRIDPHA 393

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
           +         +   A+      +D  GR      L +   + I V + 
Sbjct: 394 ETERYRQHVLETKGAQ------LDAEGRALLEEDLRSPCTEEIAVFQA 435


>gi|332086092|gb|EGI91254.1| cell division protease ftsH [Shigella boydii 5216-82]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|293449512|ref|ZP_06663933.1| hflB [Escherichia coli B088]
 gi|291322602|gb|EFE62031.1| hflB [Escherichia coli B088]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|302868058|ref|YP_003836695.1| ABC transporter-like protein [Micromonospora aurantiaca ATCC 27029]
 gi|302570917|gb|ADL47119.1| ABC transporter related [Micromonospora aurantiaca ATCC 27029]
          Length = 646

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            R  VI +VG NG GKTT+   ++      G  +     D
Sbjct: 415 RRGEVIALVGENGSGKTTLAKLIAGLYRPTGGTIRWDGVD 454


>gi|239982018|ref|ZP_04704542.1| ABC-transport protein, ATP-binding component [Streptomyces albus
           J1074]
          Length = 336

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSE------LIHKMLMPLSKPFNWDFS-HRPH 112
           +   ++ V +L  +R  ++V     +  V E      L+ +    +       FS  R  
Sbjct: 1   MDATERPVADLPAQRDGQEVIHLDRVEKVFEVRRRAGLLRREKREVRAVDGLSFSVGRGE 60

Query: 113 VILVVGVNGVGKTTVI 128
           V+  VG NG GK+T I
Sbjct: 61  VVGFVGPNGAGKSTTI 76


>gi|261367129|ref|ZP_05980012.1| phosphoribulokinase/uridine kinase family protein [Subdoligranulum
           variabile DSM 15176]
 gi|282571252|gb|EFB76787.1| phosphoribulokinase/uridine kinase family protein [Subdoligranulum
           variabile DSM 15176]
          Length = 311

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 25/43 (58%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           H++++ G +  GKTT   KL+  ++  G + ++ + D F + A
Sbjct: 50  HIVMLTGASAAGKTTSAHKLAAAIAAQGRRSVVLSLDDFYAGA 92


>gi|260804585|ref|XP_002597168.1| hypothetical protein BRAFLDRAFT_260836 [Branchiostoma floridae]
 gi|229282431|gb|EEN53180.1| hypothetical protein BRAFLDRAFT_260836 [Branchiostoma floridae]
          Length = 708

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 70/179 (39%), Gaps = 16/179 (8%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT--KRYAKDVS 80
           +T  ++   I+  +   ++    +EE    L+  D    +AQ   ++LL   +  A  V 
Sbjct: 274 NTLEEIVRHISSHLGDGKVKHVTKEE---ALLSKD----LAQADFDQLLVNLRMEAMFVK 326

Query: 81  VQRVLYDVSEL-IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
               +  ++E  + + +  + + +       P    ++G   VGKTT+  KL +      
Sbjct: 327 ESMRIMWIAETGMCENIDTVIREYKQSRGLLPMRACIMGPPAVGKTTIAKKLCEHYKLHH 386

Query: 140 LKVMLAAGDTFRSAAIDQLKIW-ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           +K+     +     A++ LK   A     +    +  +  A    +A ++++    D +
Sbjct: 387 IKIKDVIDE-----AVENLKRLSARAEGEEEEEDDGKAQEAQELLDAIQESRENNNDRI 440


>gi|145351488|ref|XP_001420108.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580341|gb|ABO98401.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 437

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +      KD++    +      +   L    K +N   +  P  +L+ G  G GKT   
Sbjct: 54  NVRQGMTLKDITGIDNVKAEMFELISYLKDFEK-YNSMGARIPAGVLLCGPPGTGKT--- 109

Query: 129 GKLSKKMSDAGLKVMLAAGDT 149
             L++ ++        +   T
Sbjct: 110 -LLARCVAGEANVPFFSCAGT 129


>gi|119872000|ref|YP_930007.1| Rad51-like protein [Pyrobaculum islandicum DSM 4184]
 gi|119673408|gb|ABL87664.1| Rad51-like protein [Pyrobaculum islandicum DSM 4184]
          Length = 311

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 16/189 (8%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYA-KDVSV 81
            T  KL E    I S   L +   EEL +  I        A K+++++L K    K V+ 
Sbjct: 17  KTFEKLME--LGITSLEHLSEFTAEELAEAGIE----YERAVKLLQQVLQKVGGVKAVTF 70

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                   +     L+   +   W       +    G  G GK+    +L+      G  
Sbjct: 71  GEFRQRQVKTFKTGLVEFDEKTPWRGIREGFIYEFAGEYGTGKSMFAHQLAVVGLKEGFT 130

Query: 142 VMLAAGD---TFRSAAID------QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
             +   D   TF    ++       ++I    TS              +      +   +
Sbjct: 131 ARVVYIDTEGTFNPTLVETIARRFGVEIERLDTSLVLYQPANVMQLEQIVKYDIPRHIQE 190

Query: 193 KVDVLIIDT 201
              ++IIDT
Sbjct: 191 GCRLVIIDT 199


>gi|148656155|ref|YP_001276360.1| LAO/AO transport system ATPase [Roseiflexus sp. RS-1]
 gi|148568265|gb|ABQ90410.1| LAO/AO transport system ATPase [Roseiflexus sp. RS-1]
          Length = 312

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 54/166 (32%), Gaps = 25/166 (15%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKI 160
           + R H+I V G  G GK+T++  L+     AG  V + A D    F   AI      ++ 
Sbjct: 40  TGRAHIIGVTGAPGAGKSTLVAALAAHWRRAGRTVGIIAVDPTSPFTRGAILGDRIRMQA 99

Query: 161 WADRTSADFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +                  +A    +A     A   DV++++T G        +     
Sbjct: 100 LSGDPGTFIRSMASRGRLGGIARATGDAVALLDAAGFDVILVETVGAGQGE---VEIAAA 156

Query: 218 MIRVLKRLDPHAPHSV------------LQVLDATTGQNALRQVEM 251
               +    P A   V            L V++    + A + V  
Sbjct: 157 AHTTIVIETPGAGDDVQAIKAGILEIADLLVVNKADREGADQTVRH 202


>gi|39644620|gb|AAH13349.1| C10orf2 protein [Homo sapiens]
          Length = 451

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 61/212 (28%), Gaps = 36/212 (16%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRP--HVIL----------VVGVNGVGKTTVIGKLSK 133
             + E +   L  + +     +S  P  + IL            G  G GKTT I + + 
Sbjct: 240 RQLREEVLGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYAL 299

Query: 134 KMSDAGLKVMLAAGDT--FRSAAI-----------DQLKIWADRTS------ADFVCSEI 174
            +   G+  +  + +    R A +           DQL  +             F+    
Sbjct: 300 DLCSQGVNTLWGSFEISNVRLARVMLTQFAEGRLEDQLDKYDHWADRFEDLPLYFMTFHG 359

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIID----TAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 +            +  +IID      G    ++  +A    +I V ++      
Sbjct: 360 QQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKFATDNN 419

Query: 231 HSVLQVLDATTGQNALR-QVEMFHAVAGTTGL 261
             V  V+      +    Q       A  +GL
Sbjct: 420 CHVTLVIHPRKEDDDKELQTASIFGSAKVSGL 451


>gi|255304946|ref|NP_001157284.1| twinkle protein, mitochondrial isoform B [Homo sapiens]
 gi|14582618|gb|AAK69559.1|AF292005_1 truncated putative T7-like mitochondrial DNA helicase [Homo
           sapiens]
 gi|56462549|emb|CAI10924.1| progressive external ophthalmoplegia 1 [Homo sapiens]
          Length = 582

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 61/212 (28%), Gaps = 36/212 (16%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRP--HVIL----------VVGVNGVGKTTVIGKLSK 133
             + E +   L  + +     +S  P  + IL            G  G GKTT I + + 
Sbjct: 371 RQLREEVLGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYAL 430

Query: 134 KMSDAGLKVMLAAGDT--FRSAAI-----------DQLKIWADRTS------ADFVCSEI 174
            +   G+  +  + +    R A +           DQL  +             F+    
Sbjct: 431 DLCSQGVNTLWGSFEISNVRLARVMLTQFAEGRLEDQLDKYDHWADRFEDLPLYFMTFHG 490

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIID----TAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                 +            +  +IID      G    ++  +A    +I V ++      
Sbjct: 491 QQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKFATDNN 550

Query: 231 HSVLQVLDATTGQNALR-QVEMFHAVAGTTGL 261
             V  V+      +    Q       A  +GL
Sbjct: 551 CHVTLVIHPRKEDDDKELQTASIFGSAKVSGL 582


>gi|27881470|ref|NP_777370.1| non-structural polyprotein [Walrus calicivirus]
 gi|11992269|gb|AAG42491.1|AF321298_1 non-structural polyprotein [walrus calicivirus]
          Length = 1880

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 54  IRSDIGVAVA---QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           I +DI        Q++ E L  +  +  ++     Y  + ++  ++  L    +     +
Sbjct: 519 ITADI--DAVINLQRLAETLRDEVKSHTLNPLMQPY--NPILRNLMSALDNVISCCTRRK 574

Query: 111 --------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                   P  I++ G  G GKTT    L+K++S     ++    D
Sbjct: 575 AIATKRTAPVAIILTGPPGCGKTTAAFALAKRLSQQKPSIISLDVD 620


>gi|28392835|ref|NP_786915.1| putative NTPase protein [Walrus calicivirus]
          Length = 356

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 54  IRSDIGVAVA---QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           I +DI        Q++ E L  +  +  ++     Y  + ++  ++  L    +     +
Sbjct: 84  ITADI--DAVINLQRLAETLRDEVKSHTLNPLMQPY--NPILRNLMSALDNVISCCTRRK 139

Query: 111 --------PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                   P  I++ G  G GKTT    L+K++S     ++    D
Sbjct: 140 AIATKRTAPVAIILTGPPGCGKTTAAFALAKRLSQQKPSIISLDVD 185


>gi|157158704|ref|YP_001464653.1| ATP-dependent metalloprotease [Escherichia coli E24377A]
 gi|157162661|ref|YP_001459979.1| ATP-dependent metalloprotease [Escherichia coli HS]
 gi|188491848|ref|ZP_02999118.1| ATP-dependent metallopeptidase HflB [Escherichia coli 53638]
 gi|191168060|ref|ZP_03029860.1| ATP-dependent metallopeptidase HflB [Escherichia coli B7A]
 gi|194430224|ref|ZP_03062722.1| ATP-dependent metallopeptidase HflB [Escherichia coli B171]
 gi|237706070|ref|ZP_04536551.1| ATP-dependent metalloprotease [Escherichia sp. 3_2_53FAA]
 gi|253771988|ref|YP_003034819.1| ATP-dependent metalloprotease [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038343|ref|ZP_04872401.1| ATP-dependent metalloprotease [Escherichia sp. 1_1_43]
 gi|293406787|ref|ZP_06650713.1| hflB [Escherichia coli FVEC1412]
 gi|293412550|ref|ZP_06655273.1| hflB [Escherichia coli B354]
 gi|298382528|ref|ZP_06992125.1| hflB [Escherichia coli FVEC1302]
 gi|301025977|ref|ZP_07189460.1| ATP-dependent metalloprotease [Escherichia coli MS 196-1]
 gi|307313117|ref|ZP_07592743.1| ATP-dependent metalloprotease FtsH [Escherichia coli W]
 gi|332279991|ref|ZP_08392404.1| ATP-dependent metalloprotease [Shigella sp. D9]
 gi|746401|gb|AAA97508.1| ATP-binding protein [Escherichia coli]
 gi|157068341|gb|ABV07596.1| ATP-dependent metallopeptidase HflB [Escherichia coli HS]
 gi|157080734|gb|ABV20442.1| ATP-dependent metallopeptidase HflB [Escherichia coli E24377A]
 gi|188487047|gb|EDU62150.1| ATP-dependent metallopeptidase HflB [Escherichia coli 53638]
 gi|190901929|gb|EDV61678.1| ATP-dependent metallopeptidase HflB [Escherichia coli B7A]
 gi|194411725|gb|EDX28049.1| ATP-dependent metallopeptidase HflB [Escherichia coli B171]
 gi|226839967|gb|EEH71988.1| ATP-dependent metalloprotease [Escherichia sp. 1_1_43]
 gi|226899110|gb|EEH85369.1| ATP-dependent metalloprotease [Escherichia sp. 3_2_53FAA]
 gi|253323032|gb|ACT27634.1| ATP-dependent metalloprotease FtsH [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260447795|gb|ACX38217.1| ATP-dependent metalloprotease FtsH [Escherichia coli DH1]
 gi|284923201|emb|CBG36295.1| cell division protein [Escherichia coli 042]
 gi|291426793|gb|EFE99825.1| hflB [Escherichia coli FVEC1412]
 gi|291469321|gb|EFF11812.1| hflB [Escherichia coli B354]
 gi|294491080|gb|ADE89836.1| ATP-dependent metallopeptidase HflB [Escherichia coli IHE3034]
 gi|298277668|gb|EFI19184.1| hflB [Escherichia coli FVEC1302]
 gi|299879903|gb|EFI88114.1| ATP-dependent metalloprotease [Escherichia coli MS 196-1]
 gi|306907028|gb|EFN37536.1| ATP-dependent metalloprotease FtsH [Escherichia coli W]
 gi|313648580|gb|EFS13022.1| cell division protease ftsH [Shigella flexneri 2a str. 2457T]
 gi|315062484|gb|ADT76811.1| protease, ATP-dependent zinc-metallo [Escherichia coli W]
 gi|315137764|dbj|BAJ44923.1| hflB [Escherichia coli DH1]
 gi|323376928|gb|ADX49196.1| ATP-dependent metalloprotease FtsH [Escherichia coli KO11]
 gi|332102343|gb|EGJ05689.1| ATP-dependent metalloprotease [Shigella sp. D9]
          Length = 647

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|82778492|ref|YP_404841.1| ATP-dependent metalloprotease [Shigella dysenteriae Sd197]
 gi|309785506|ref|ZP_07680137.1| cell division protease ftsH [Shigella dysenteriae 1617]
 gi|81242640|gb|ABB63350.1| HflB [Shigella dysenteriae Sd197]
 gi|308926626|gb|EFP72102.1| cell division protease ftsH [Shigella dysenteriae 1617]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|82545584|ref|YP_409531.1| ATP-dependent metalloprotease [Shigella boydii Sb227]
 gi|81246995|gb|ABB67703.1| HflB [Shigella boydii Sb227]
 gi|320186665|gb|EFW61389.1| Cell division protein FtsH [Shigella flexneri CDC 796-83]
 gi|332090713|gb|EGI95807.1| cell division protease ftsH [Shigella boydii 3594-74]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|24372780|ref|NP_716822.1| cell division protein FtsH [Shewanella oneidensis MR-1]
 gi|24346861|gb|AAN54267.1|AE015563_7 cell division protein FtsH [Shewanella oneidensis MR-1]
          Length = 649

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   K    DV+      +  + +   L   +K F       P  +L+VG  G GK
Sbjct: 142 KLMSEDQIKTTFADVAGCDEAKEEVKELVDYLRDPTK-FQKLGGRIPTGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 201 T----LLAKAIAGESKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKSAPCIIF-IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN 300

Query: 242 GQNALRQV 249
             + L   
Sbjct: 301 RPDVLDSA 308


>gi|16131068|ref|NP_417645.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K-12
           substr. MG1655]
 gi|24114467|ref|NP_708977.1| ATP-dependent metalloprotease [Shigella flexneri 2a str. 301]
 gi|30064516|ref|NP_838687.1| ATP-dependent metalloprotease [Shigella flexneri 2a str. 2457T]
 gi|74313715|ref|YP_312134.1| ATP-dependent metalloprotease [Shigella sonnei Ss046]
 gi|89109941|ref|AP_003721.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K-12
           substr. W3110]
 gi|91212599|ref|YP_542585.1| ATP-dependent metalloprotease [Escherichia coli UTI89]
 gi|110643418|ref|YP_671148.1| ATP-dependent metalloprotease [Escherichia coli 536]
 gi|110807044|ref|YP_690564.1| ATP-dependent metalloprotease [Shigella flexneri 5 str. 8401]
 gi|117625472|ref|YP_858795.1| ATP-dependent metalloprotease [Escherichia coli APEC O1]
 gi|170018572|ref|YP_001723526.1| ATP-dependent metalloprotease [Escherichia coli ATCC 8739]
 gi|170082713|ref|YP_001732033.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|209920653|ref|YP_002294737.1| ATP-dependent metalloprotease [Escherichia coli SE11]
 gi|215488494|ref|YP_002330925.1| ATP-dependent metalloprotease [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218550461|ref|YP_002384252.1| ATP-dependent metalloprotease [Escherichia fergusonii ATCC 35469]
 gi|218555748|ref|YP_002388661.1| ATP-dependent metalloprotease [Escherichia coli IAI1]
 gi|218560248|ref|YP_002393161.1| ATP-dependent metalloprotease [Escherichia coli S88]
 gi|218691468|ref|YP_002399680.1| ATP-dependent metalloprotease [Escherichia coli ED1a]
 gi|218696883|ref|YP_002404550.1| ATP-dependent metalloprotease [Escherichia coli 55989]
 gi|218701947|ref|YP_002409576.1| ATP-dependent metalloprotease [Escherichia coli IAI39]
 gi|218706798|ref|YP_002414317.1| ATP-dependent metalloprotease [Escherichia coli UMN026]
 gi|227887899|ref|ZP_04005704.1| M41 family endopeptidase FtsH [Escherichia coli 83972]
 gi|238902280|ref|YP_002928076.1| protease, ATP-dependent zinc-metallo [Escherichia coli BW2952]
 gi|254163120|ref|YP_003046228.1| ATP-dependent metalloprotease [Escherichia coli B str. REL606]
 gi|256018903|ref|ZP_05432768.1| ATP-dependent metalloprotease [Shigella sp. D9]
 gi|256024247|ref|ZP_05438112.1| ATP-dependent metalloprotease [Escherichia sp. 4_1_40B]
 gi|260845991|ref|YP_003223769.1| protease, ATP-dependent zinc-metallo [Escherichia coli O103:H2 str.
           12009]
 gi|260857305|ref|YP_003231196.1| protease, ATP-dependent zinc-metallo [Escherichia coli O26:H11 str.
           11368]
 gi|260869929|ref|YP_003236331.1| protease, ATP-dependent zinc-metallo [Escherichia coli O111:H- str.
           11128]
 gi|291284552|ref|YP_003501370.1| Cell division protease ftsH [Escherichia coli O55:H7 str. CB9615]
 gi|293416608|ref|ZP_06659247.1| hflB [Escherichia coli B185]
 gi|297520552|ref|ZP_06938938.1| ATP-dependent metalloprotease [Escherichia coli OP50]
 gi|300817569|ref|ZP_07097785.1| ATP-dependent metalloprotease [Escherichia coli MS 107-1]
 gi|300823858|ref|ZP_07103982.1| ATP-dependent metalloprotease [Escherichia coli MS 119-7]
 gi|300897943|ref|ZP_07116321.1| ATP-dependent metalloprotease [Escherichia coli MS 198-1]
 gi|300904365|ref|ZP_07122217.1| ATP-dependent metalloprotease [Escherichia coli MS 84-1]
 gi|300918936|ref|ZP_07135494.1| ATP-dependent metalloprotease [Escherichia coli MS 115-1]
 gi|300926081|ref|ZP_07141900.1| ATP-dependent metalloprotease [Escherichia coli MS 182-1]
 gi|300929870|ref|ZP_07145315.1| ATP-dependent metalloprotease [Escherichia coli MS 187-1]
 gi|300938090|ref|ZP_07152867.1| ATP-dependent metalloprotease [Escherichia coli MS 21-1]
 gi|300948829|ref|ZP_07162896.1| ATP-dependent metalloprotease [Escherichia coli MS 116-1]
 gi|300955764|ref|ZP_07168108.1| ATP-dependent metalloprotease [Escherichia coli MS 175-1]
 gi|300990825|ref|ZP_07179352.1| ATP-dependent metalloprotease [Escherichia coli MS 45-1]
 gi|301022033|ref|ZP_07185976.1| ATP-dependent metalloprotease [Escherichia coli MS 69-1]
 gi|301047978|ref|ZP_07195021.1| ATP-dependent metalloprotease [Escherichia coli MS 185-1]
 gi|301301764|ref|ZP_07207898.1| ATP-dependent metalloprotease [Escherichia coli MS 124-1]
 gi|301326397|ref|ZP_07219753.1| ATP-dependent metalloprotease [Escherichia coli MS 78-1]
 gi|301644889|ref|ZP_07244860.1| ATP-dependent metalloprotease [Escherichia coli MS 146-1]
 gi|306816480|ref|ZP_07450612.1| ATP-dependent metalloprotease [Escherichia coli NC101]
 gi|307139864|ref|ZP_07499220.1| ATP-dependent metalloprotease [Escherichia coli H736]
 gi|309793755|ref|ZP_07688181.1| ATP-dependent metalloprotease [Escherichia coli MS 145-7]
 gi|312968485|ref|ZP_07782694.1| cell division protease ftsH [Escherichia coli 2362-75]
 gi|312972548|ref|ZP_07786722.1| cell division protease ftsH [Escherichia coli 1827-70]
 gi|331643876|ref|ZP_08345007.1| cell division protease FtsH [Escherichia coli H736]
 gi|331648978|ref|ZP_08350066.1| cell division protease FtsH [Escherichia coli M605]
 gi|331654782|ref|ZP_08355782.1| cell division protease FtsH [Escherichia coli M718]
 gi|331659465|ref|ZP_08360407.1| cell division protease FtsH [Escherichia coli TA206]
 gi|331664790|ref|ZP_08365695.1| cell division protease FtsH [Escherichia coli TA143]
 gi|331670005|ref|ZP_08370850.1| cell division protease FtsH [Escherichia coli TA271]
 gi|331679257|ref|ZP_08379929.1| cell division protease FtsH [Escherichia coli H591]
 gi|331684825|ref|ZP_08385417.1| cell division protease FtsH [Escherichia coli H299]
 gi|77416821|sp|P0AAI3|FTSH_ECOLI RecName: Full=ATP-dependent zinc metalloprotease FtsH; AltName:
           Full=Cell division protease FtsH
 gi|77416822|sp|P0AAI4|FTSH_SHIFL RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|146028|gb|AAA23813.1| ftsH [Escherichia coli str. K-12 substr. W3110]
 gi|606116|gb|AAA57979.1| CG Site No. 735 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789568|gb|AAC76210.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K-12
           substr. MG1655]
 gi|24053649|gb|AAN44684.1| Zn metallo-peptidase, integral membrane cell division protein
           [Shigella flexneri 2a str. 301]
 gi|30042775|gb|AAP18498.1| Zn metallo-peptidase, integral membrane cell division protein
           [Shigella flexneri 2a str. 2457T]
 gi|73857192|gb|AAZ89899.1| degrades sigma32, integral membrane peptidase, cell division
           protein [Shigella sonnei Ss046]
 gi|85675972|dbj|BAE77222.1| protease, ATP-dependent zinc-metallo [Escherichia coli str. K12
           substr. W3110]
 gi|91074173|gb|ABE09054.1| ATP-binding protein [Escherichia coli UTI89]
 gi|110345010|gb|ABG71247.1| cell division protein FtsH [Escherichia coli 536]
 gi|110616592|gb|ABF05259.1| ATP-dependent zinc-metallo protease [Shigella flexneri 5 str. 8401]
 gi|115514596|gb|ABJ02671.1| putative ATP-dependent zinc metalloprotease [Escherichia coli APEC
           O1]
 gi|169753500|gb|ACA76199.1| ATP-dependent metalloprotease FtsH [Escherichia coli ATCC 8739]
 gi|169890548|gb|ACB04255.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|209758258|gb|ACI77441.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|209758264|gb|ACI77444.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|209913912|dbj|BAG78986.1| cell division protein [Escherichia coli SE11]
 gi|215266566|emb|CAS11005.1| protease, ATP-dependent zinc-metallo [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218353615|emb|CAU99811.1| protease, ATP-dependent zinc-metallo [Escherichia coli 55989]
 gi|218358002|emb|CAQ90648.1| protease, ATP-dependent zinc-metallo [Escherichia fergusonii ATCC
           35469]
 gi|218362516|emb|CAR00140.1| protease, ATP-dependent zinc-metallo [Escherichia coli IAI1]
 gi|218367017|emb|CAR04788.1| protease, ATP-dependent zinc-metallo [Escherichia coli S88]
 gi|218371933|emb|CAR19789.1| protease, ATP-dependent zinc-metallo [Escherichia coli IAI39]
 gi|218429032|emb|CAR09979.2| protease, ATP-dependent zinc-metallo [Escherichia coli ED1a]
 gi|218433895|emb|CAR14812.1| protease, ATP-dependent zinc-metallo [Escherichia coli UMN026]
 gi|222034895|emb|CAP77638.1| Cell division protease ftsH [Escherichia coli LF82]
 gi|227835295|gb|EEJ45761.1| M41 family endopeptidase FtsH [Escherichia coli 83972]
 gi|238863291|gb|ACR65289.1| protease, ATP-dependent zinc-metallo [Escherichia coli BW2952]
 gi|242378721|emb|CAQ33511.1| ATP-dependent zinc metalloprotease FtsH, subunit of HflB, integral
           membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli BL21(DE3)]
 gi|253975021|gb|ACT40692.1| protease, ATP-dependent zinc-metallo [Escherichia coli B str.
           REL606]
 gi|253979177|gb|ACT44847.1| protease, ATP-dependent zinc-metallo [Escherichia coli BL21(DE3)]
 gi|257755954|dbj|BAI27456.1| protease, ATP-dependent zinc-metallo [Escherichia coli O26:H11 str.
           11368]
 gi|257761138|dbj|BAI32635.1| protease, ATP-dependent zinc-metallo [Escherichia coli O103:H2 str.
           12009]
 gi|257766285|dbj|BAI37780.1| protease, ATP-dependent zinc-metallo [Escherichia coli O111:H- str.
           11128]
 gi|281180220|dbj|BAI56550.1| cell division protein [Escherichia coli SE15]
 gi|281602561|gb|ADA75545.1| Cell division protease ftsH [Shigella flexneri 2002017]
 gi|290764425|gb|ADD58386.1| Cell division protease ftsH [Escherichia coli O55:H7 str. CB9615]
 gi|291431964|gb|EFF04947.1| hflB [Escherichia coli B185]
 gi|300300163|gb|EFJ56548.1| ATP-dependent metalloprotease [Escherichia coli MS 185-1]
 gi|300317359|gb|EFJ67143.1| ATP-dependent metalloprotease [Escherichia coli MS 175-1]
 gi|300358335|gb|EFJ74205.1| ATP-dependent metalloprotease [Escherichia coli MS 198-1]
 gi|300397748|gb|EFJ81286.1| ATP-dependent metalloprotease [Escherichia coli MS 69-1]
 gi|300403688|gb|EFJ87226.1| ATP-dependent metalloprotease [Escherichia coli MS 84-1]
 gi|300407045|gb|EFJ90583.1| ATP-dependent metalloprotease [Escherichia coli MS 45-1]
 gi|300413932|gb|EFJ97242.1| ATP-dependent metalloprotease [Escherichia coli MS 115-1]
 gi|300417870|gb|EFK01181.1| ATP-dependent metalloprotease [Escherichia coli MS 182-1]
 gi|300451685|gb|EFK15305.1| ATP-dependent metalloprotease [Escherichia coli MS 116-1]
 gi|300456911|gb|EFK20404.1| ATP-dependent metalloprotease [Escherichia coli MS 21-1]
 gi|300462203|gb|EFK25696.1| ATP-dependent metalloprotease [Escherichia coli MS 187-1]
 gi|300523626|gb|EFK44695.1| ATP-dependent metalloprotease [Escherichia coli MS 119-7]
 gi|300529867|gb|EFK50929.1| ATP-dependent metalloprotease [Escherichia coli MS 107-1]
 gi|300842745|gb|EFK70505.1| ATP-dependent metalloprotease [Escherichia coli MS 124-1]
 gi|300846908|gb|EFK74668.1| ATP-dependent metalloprotease [Escherichia coli MS 78-1]
 gi|301076795|gb|EFK91601.1| ATP-dependent metalloprotease [Escherichia coli MS 146-1]
 gi|305850045|gb|EFM50504.1| ATP-dependent metalloprotease [Escherichia coli NC101]
 gi|307555272|gb|ADN48047.1| cell division protease FtsH [Escherichia coli ABU 83972]
 gi|307625223|gb|ADN69527.1| ATP-dependent metalloprotease [Escherichia coli UM146]
 gi|308122712|gb|EFO59974.1| ATP-dependent metalloprotease [Escherichia coli MS 145-7]
 gi|309703604|emb|CBJ02944.1| cell division protein [Escherichia coli ETEC H10407]
 gi|310334925|gb|EFQ01130.1| cell division protease ftsH [Escherichia coli 1827-70]
 gi|312286703|gb|EFR14614.1| cell division protease ftsH [Escherichia coli 2362-75]
 gi|312947735|gb|ADR28562.1| ATP-dependent metalloprotease [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315257103|gb|EFU37071.1| ATP-dependent metalloprotease [Escherichia coli MS 85-1]
 gi|315288958|gb|EFU48356.1| ATP-dependent metalloprotease [Escherichia coli MS 110-3]
 gi|315294885|gb|EFU54224.1| ATP-dependent metalloprotease [Escherichia coli MS 153-1]
 gi|315297892|gb|EFU57162.1| ATP-dependent metalloprotease [Escherichia coli MS 16-3]
 gi|315617261|gb|EFU97870.1| cell division protease ftsH [Escherichia coli 3431]
 gi|320194663|gb|EFW69293.1| Cell division protein FtsH [Escherichia coli WV_060327]
 gi|320640249|gb|EFX09821.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str. G5101]
 gi|320645546|gb|EFX14555.1| ATP-dependent metalloprotease [Escherichia coli O157:H- str.
           493-89]
 gi|320650856|gb|EFX19313.1| ATP-dependent metalloprotease [Escherichia coli O157:H- str. H
           2687]
 gi|320656237|gb|EFX24149.1| ATP-dependent metalloprotease [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661927|gb|EFX29335.1| ATP-dependent metalloprotease [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666762|gb|EFX33741.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323154391|gb|EFZ40592.1| cell division protease ftsH [Escherichia coli EPECa14]
 gi|323162870|gb|EFZ48705.1| cell division protease ftsH [Escherichia coli E128010]
 gi|323165138|gb|EFZ50928.1| cell division protease ftsH [Shigella sonnei 53G]
 gi|323173562|gb|EFZ59191.1| cell division protease ftsH [Escherichia coli LT-68]
 gi|323178646|gb|EFZ64222.1| cell division protease ftsH [Escherichia coli 1180]
 gi|323183132|gb|EFZ68530.1| cell division protease ftsH [Escherichia coli 1357]
 gi|323189201|gb|EFZ74485.1| cell division protease ftsH [Escherichia coli RN587/1]
 gi|323936128|gb|EGB32422.1| ATP-dependent metallopeptidase HflB [Escherichia coli E1520]
 gi|323941722|gb|EGB37901.1| ATP-dependent metallopeptidase HflB [Escherichia coli E482]
 gi|323946968|gb|EGB42984.1| ATP-dependent metallopeptidase HflB [Escherichia coli H120]
 gi|323951303|gb|EGB47178.1| ATP-dependent metallopeptidase HflB [Escherichia coli H252]
 gi|323957675|gb|EGB53389.1| ATP-dependent metallopeptidase HflB [Escherichia coli H263]
 gi|323961167|gb|EGB56781.1| ATP-dependent metallopeptidase HflB [Escherichia coli H489]
 gi|323966358|gb|EGB61792.1| ATP-dependent metallopeptidase HflB [Escherichia coli M863]
 gi|323970259|gb|EGB65530.1| ATP-dependent metallopeptidase HflB [Escherichia coli TA007]
 gi|323979105|gb|EGB74183.1| ATP-dependent metallopeptidase HflB [Escherichia coli TW10509]
 gi|324008749|gb|EGB77968.1| ATP-dependent metalloprotease [Escherichia coli MS 57-2]
 gi|324018297|gb|EGB87516.1| ATP-dependent metalloprotease [Escherichia coli MS 117-3]
 gi|324115218|gb|EGC09182.1| ATP-dependent metallopeptidase HflB [Escherichia fergusonii B253]
 gi|324119543|gb|EGC13425.1| ATP-dependent metallopeptidase HflB [Escherichia coli E1167]
 gi|325498759|gb|EGC96618.1| ATP-dependent metalloprotease [Escherichia fergusonii ECD227]
 gi|327251269|gb|EGE62958.1| cell division protease ftsH [Escherichia coli STEC_7v]
 gi|330909232|gb|EGH37746.1| cell division protein FtsH [Escherichia coli AA86]
 gi|331037347|gb|EGI09571.1| cell division protease FtsH [Escherichia coli H736]
 gi|331042725|gb|EGI14867.1| cell division protease FtsH [Escherichia coli M605]
 gi|331048164|gb|EGI20241.1| cell division protease FtsH [Escherichia coli M718]
 gi|331054047|gb|EGI26076.1| cell division protease FtsH [Escherichia coli TA206]
 gi|331058038|gb|EGI30020.1| cell division protease FtsH [Escherichia coli TA143]
 gi|331062918|gb|EGI34832.1| cell division protease FtsH [Escherichia coli TA271]
 gi|331073322|gb|EGI44645.1| cell division protease FtsH [Escherichia coli H591]
 gi|331078440|gb|EGI49646.1| cell division protease FtsH [Escherichia coli H299]
 gi|332345134|gb|AEE58468.1| cell division protease FtsH [Escherichia coli UMNK88]
 gi|332752337|gb|EGJ82727.1| cell division protease ftsH [Shigella flexneri 4343-70]
 gi|332752863|gb|EGJ83248.1| cell division protease ftsH [Shigella flexneri K-671]
 gi|332754442|gb|EGJ84808.1| cell division protease ftsH [Shigella flexneri 2747-71]
 gi|332765174|gb|EGJ95401.1| ftsH HflB [Shigella flexneri 2930-71]
 gi|332998820|gb|EGK18416.1| cell division protease ftsH [Shigella flexneri VA-6]
 gi|332999256|gb|EGK18842.1| cell division protease ftsH [Shigella flexneri K-272]
 gi|333000055|gb|EGK19638.1| cell division protease ftsH [Shigella flexneri K-218]
 gi|333014604|gb|EGK33951.1| cell division protease ftsH [Shigella flexneri K-304]
 gi|333014979|gb|EGK34323.1| cell division protease ftsH [Shigella flexneri K-227]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|269120496|ref|YP_003308673.1| ABC transporter [Sebaldella termitidis ATCC 33386]
 gi|268614374|gb|ACZ08742.1| ABC transporter related protein [Sebaldella termitidis ATCC 33386]
          Length = 618

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 13/160 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKM-------SDAGLKVMLAAGDTFR--SAAIDQLK 159
            +   + +VG  GVGKTT+I  + +            G        D+ R     + Q  
Sbjct: 398 KKGETVALVGPTGVGKTTIINLIMRFYDIKDGEIKINGKNSKTIKLDSLRKKIGIVLQET 457

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII---DTAGRLHNNSILMAGIG 216
           +    T +D +             EA  +A A     L+    DT  R      L +G  
Sbjct: 458 VLFMGTVSDNIRFGKLDADDHEIREAAHKANADDFINLLKEEYDTELRDDG-ENLSSGQR 516

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +++ + + +       +L    +       ++++      
Sbjct: 517 QLLSIARTILSDPDVLILDEATSNVDTRTEKKIQQAMKNL 556


>gi|226303954|ref|YP_002763912.1| anion-transporting ATPase [Rhodococcus erythropolis PR4]
 gi|226183069|dbj|BAH31173.1| putative anion-transporting ATPase [Rhodococcus erythropolis PR4]
          Length = 393

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           +++  G  GVGKTT    L+ + ++ G +V++   D  R  A
Sbjct: 37  IVVCCGAGGVGKTTTAASLALRAAEEGRRVVVLTIDPARRLA 78


>gi|223985727|ref|ZP_03635774.1| hypothetical protein HOLDEFILI_03080 [Holdemania filiformis DSM
           12042]
 gi|223962338|gb|EEF66803.1| hypothetical protein HOLDEFILI_03080 [Holdemania filiformis DSM
           12042]
          Length = 577

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            PL + FN         I +VG  G GKTT+I  L +     G  + L   DT R+ +  
Sbjct: 352 EPLIEDFNLSVKPG-QKIAIVGPTGCGKTTLINLLMRFYEIGGGVIRLDGVDT-RTLSRS 409

Query: 157 QLK 159
           +L+
Sbjct: 410 ELR 412


>gi|187731936|ref|YP_001881907.1| ATP-dependent metalloprotease [Shigella boydii CDC 3083-94]
 gi|187428928|gb|ACD08202.1| ATP-dependent metallopeptidase HflB [Shigella boydii CDC 3083-94]
          Length = 647

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|50119646|ref|YP_048813.1| ATP-dependent metalloprotease [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610172|emb|CAG73612.1| cell division protein [Pectobacterium atrosepticum SCRI1043]
          Length = 645

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  IL+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVEYLREPSRFQKLGGKIPSGILMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|15892086|ref|NP_359800.1| Mrp protein [Rickettsia conorii str. Malish 7]
 gi|38257881|sp|Q92JA4|MRP_RICCN RecName: Full=Protein mrp homolog
 gi|15619209|gb|AAL02701.1| Mrp protein [Rickettsia conorii str. Malish 7]
          Length = 319

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 68  EELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           EE+  K   K  ++S    +  V      M   + KP ++  + +  +++  G  GVGK+
Sbjct: 53  EEIRLKAINKLNEISEVNKITIVFTESKPMEKKVQKPKHFVENVKKIILVASGKGGVGKS 112

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTF 150
           T+   +++++S A  +V +   D +
Sbjct: 113 TISALIAQQLSLANYRVGIVDADIY 137


>gi|315300961|ref|ZP_07872307.1| ABC transporter, ATP-binding/permease protein [Listeria ivanovii
           FSL F6-596]
 gi|313630669|gb|EFR98456.1| ABC transporter, ATP-binding/permease protein [Listeria ivanovii
           FSL F6-596]
          Length = 593

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 13/90 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS---ELIHKMLMPLSKPFNW 105
           LE +    D+        +++L   +    +       DV    E +H +L  ++  F+ 
Sbjct: 322 LERIFETMDVEPD-----IKDLPNAKKMPQIVGNVDFKDVYFRYEEVHDILKGIN--FHV 374

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           D       I +VG  G GKTT+I  LS+  
Sbjct: 375 DAGES---IALVGPTGAGKTTIINLLSRFY 401


>gi|312194842|ref|YP_004014903.1| LAO/AO transport system ATPase [Frankia sp. EuI1c]
 gi|311226178|gb|ADP79033.1| LAO/AO transport system ATPase [Frankia sp. EuI1c]
          Length = 342

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 18/152 (11%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           VE+   +  A+ +S+          I ++L PL        +    VI V G  GVGK+T
Sbjct: 20  VEDRSPRALARLISLVEDGSPWLREIARLLAPL--------AGSAQVIGVTGAPGVGKST 71

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRS---AAI--DQLKIWADRTSADFV-----CSEIGS 176
               L   +   G +V + A D        A+  D++++ A  T  D             
Sbjct: 72  STSALVSALRAQGRRVGVLAVDPSSPFTGGALLGDRVRMTAHTTDPDVYIRSLASRGHLG 131

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             +    +A +   A   DV++++T G     
Sbjct: 132 GLSWATPQALRVLDAAGYDVVLVETVGVGQAE 163


>gi|255284144|ref|ZP_05348699.1| phosphoribulokinase family protein [Bryantella formatexigens DSM
           14469]
 gi|255265318|gb|EET58523.1| phosphoribulokinase family protein [Bryantella formatexigens DSM
           14469]
          Length = 554

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           V  A  + E++++ + +  + +Q  L +      K +  ++     D   +  +I++ G 
Sbjct: 246 VTTAGDLNEQVISGKISDLILMQEALQE------KKIAQIASQIAADPQKK--LIMIAGP 297

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +  GKTT   +L+ +++  G+K      D +
Sbjct: 298 SSSGKTTFSHRLAIQLAVNGMKPHPIPMDNY 328


>gi|320181453|gb|EFW56371.1| Cell division protein FtsH [Shigella boydii ATCC 9905]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|256847537|ref|ZP_05552983.1| deoxynucleoside kinase [Lactobacillus coleohominis 101-4-CHN]
 gi|256716201|gb|EEU31176.1| deoxynucleoside kinase [Lactobacillus coleohominis 101-4-CHN]
          Length = 124

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDA 138
           VI+  G+ GVGKTT+ GK++  +   
Sbjct: 2   VIITAGMIGVGKTTLTGKIADHLHTQ 27


>gi|258542749|ref|YP_003188182.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633827|dbj|BAH99802.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636886|dbj|BAI02855.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639939|dbj|BAI05901.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642995|dbj|BAI08950.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646050|dbj|BAI11998.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649103|dbj|BAI15044.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652090|dbj|BAI18024.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655147|dbj|BAI21074.1| DNA mismatch repair protein MutS [Acetobacter pasteurianus IFO
           3283-12]
          Length = 884

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTT----VIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P   D + +  V+L+ G N  GK+T        L+  ++  G        D  R   +D
Sbjct: 619 TPNTCDLAPQQRVMLLTGPNMAGKSTYLRQTA--LAVILAQGGFP---VPADRVRIGVVD 673

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           QL  ++   ++D +     +    +   A    QA    ++++D  GR
Sbjct: 674 QL--FSRVGASDDLARGRSTFMVEMTETAAILNQAGPRSLVVVDEIGR 719


>gi|255552465|ref|XP_002517276.1| calmodulin-binding protein, putative [Ricinus communis]
 gi|223543539|gb|EEF45069.1| calmodulin-binding protein, putative [Ricinus communis]
          Length = 1094

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 67  VEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGK 124
           +E +  K   A +++    L+    ++  +++   K        RP   +L+ G  G GK
Sbjct: 406 IENVHVKSVMAHEITKLGGLHKEYAVLKDIILSTMKNDFLSLGLRPTKGVLLHGPTGTGK 465

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
            T + +L     DAG+ ++   G       I Q    +++   +   S      A +  +
Sbjct: 466 -TSLARLCAL--DAGVNLLSVNG----PEIISQYHGESEQALHEVFASASRGAPAVVFID 518

Query: 185 AFKQAQAKKVD 195
                   + D
Sbjct: 519 ELDSIAPARKD 529


>gi|189010325|ref|ZP_03006283.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189401894|ref|ZP_03006511.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189403307|ref|ZP_03007035.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404776|ref|ZP_03007576.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC869]
 gi|208814269|ref|ZP_03255598.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820312|ref|ZP_03260632.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4042]
 gi|189001000|gb|EDU69986.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358414|gb|EDU76833.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361490|gb|EDU79909.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189374008|gb|EDU92424.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC869]
 gi|208735546|gb|EDZ84233.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740435|gb|EDZ88117.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4042]
          Length = 647

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|170682536|ref|YP_001745450.1| ATP-dependent metalloprotease [Escherichia coli SMS-3-5]
 gi|170520254|gb|ACB18432.1| ATP-dependent metallopeptidase HflB [Escherichia coli SMS-3-5]
          Length = 647

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|167524519|ref|XP_001746595.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774865|gb|EDQ88491.1| predicted protein [Monosiga brevicollis MX1]
          Length = 406

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK--MLMPLSKPFNWDFSHRPHVILVVG 118
            +A +I+ E++       +     L +  + +H+  +L  L              IL+VG
Sbjct: 218 KMAHRILNEIVDSDPGVTLDDIIGLKEAKQALHETVILPSLRPDLFTGLRKPAKGILLVG 277

Query: 119 VNGVGKTTVIGKL 131
             G GK T++ K+
Sbjct: 278 PPGNGK-TMLAKI 289


>gi|157148747|ref|YP_001456066.1| ATP-dependent metalloprotease [Citrobacter koseri ATCC BAA-895]
 gi|157085952|gb|ABV15630.1| hypothetical protein CKO_04579 [Citrobacter koseri ATCC BAA-895]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|157368550|ref|YP_001476539.1| hypothetical protein Spro_0301 [Serratia proteamaculans 568]
 gi|157320314|gb|ABV39411.1| conserved hypothetical protein [Serratia proteamaculans 568]
          Length = 308

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 99  LSKPFNWDFSHRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           ++K      S +P ++ +V    G GK+T    L+  ++DAG K +L  GD  +  A
Sbjct: 5   VTKATTASISTKPQIVPMVSTKGGEGKSTQSANLAGFLADAGKKTLLIDGDHSQPTA 61


>gi|75674730|ref|YP_317151.1| cobyrinic acid a,c-diamide synthase [Nitrobacter winogradskyi
           Nb-255]
 gi|74419600|gb|ABA03799.1| plasmid segregation oscillating ATPase ParF [Nitrobacter
           winogradskyi Nb-255]
          Length = 234

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT+   ++  ++  G +V L   D  RSA+      WA+  + +F   E+  +  +
Sbjct: 34  GVGKTTIAICVAAALARRGHEVALVDSDPQRSAS-----QWAEPGNLEFPVYEMALEQTS 88

Query: 181 LAYEAFKQAQAKKVDVLIIDTA 202
           +   A ++ ++ +  +++IDTA
Sbjct: 89  VPAWA-QEVRSIEAGIVVIDTA 109


>gi|15803718|ref|NP_289752.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 EDL933]
 gi|15833311|ref|NP_312084.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str. Sakai]
 gi|195938397|ref|ZP_03083779.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str.
           EC4024]
 gi|209399479|ref|YP_002272648.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327622|ref|ZP_03443705.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795127|ref|YP_003079964.1| ATP-dependent metalloprotease [Escherichia coli O157:H7 str.
           TW14359]
 gi|261228189|ref|ZP_05942470.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255045|ref|ZP_05947578.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|20138203|sp|Q8X9L0|FTSH_ECO57 RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|12517790|gb|AAG58312.1|AE005546_6 degrades sigma32, integral membrane peptidase, cell division
           protein [Escherichia coli O157:H7 str. EDL933]
 gi|13363530|dbj|BAB37480.1| cell division protein HflB/FtsH protease [Escherichia coli O157:H7
           str. Sakai]
 gi|209160879|gb|ACI38312.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209758260|gb|ACI77442.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|209758262|gb|ACI77443.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|209758266|gb|ACI77445.1| cell division protein HflB/FtsH protease [Escherichia coli]
 gi|217319989|gb|EEC28414.1| ATP-dependent metallopeptidase HflB [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594527|gb|ACT73888.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Escherichia coli O157:H7 str. TW14359]
 gi|320189531|gb|EFW64190.1| Cell division protein FtsH [Escherichia coli O157:H7 str. EC1212]
 gi|326337878|gb|EGD61712.1| Cell division protein FtsH [Escherichia coli O157:H7 str. 1125]
 gi|326347448|gb|EGD71173.1| Cell division protein FtsH [Escherichia coli O157:H7 str. 1044]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|119774091|ref|YP_926831.1| vesicle-fusing ATPase [Shewanella amazonensis SB2B]
 gi|119766591|gb|ABL99161.1| membrane protease FtsH catalytic subunit [Shewanella amazonensis
           SB2B]
          Length = 650

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 25/168 (14%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +M+  L  P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 164 EAKEEVKEMVDYLRDPTKFQKLGGRIPTGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 219

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 220 TISGS---------------DFVEMFVGVGASRVRDMFDQAKKSAPCIIF-IDEIDAVGR 263

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                +          + ++L  +D    +  + V+ AT   + L   
Sbjct: 264 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDAA 311


>gi|327310834|ref|YP_004337731.1| Fis family transcriptional regulator [Thermoproteus uzoniensis
           768-20]
 gi|326947313|gb|AEA12419.1| transcriptional regulator, Fis family [Thermoproteus uzoniensis
           768-20]
          Length = 313

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 17/200 (8%)

Query: 12  SWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL 71
            W+ +L  G A T  +L+E    ++S   L +   +EL D  I      + A++++    
Sbjct: 9   DWLDQLEAGPA-TRRRLEE--LGVVSLEHLVEFTVDELVDAGIE----PSTAERLLARAR 61

Query: 72  T--KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
               R  K      +L    + +   +  L +   W       +    G  G GK+ +  
Sbjct: 62  ELLGRRPKAAKASELLKAQYKAVKTGVAELDEKSPWGGLREGFIFEFAGEFGAGKSMLAH 121

Query: 130 KLSKKMSDAGL--KVMLAAGDTFRSAAIDQLKI------WADRTSADFVCSEIGSDAAAL 181
           +++ K    G    V +    TF  A  +++         A          +  S   A 
Sbjct: 122 QIAVKSIAEGFGDAVYIDTEGTFSPALAERMARRFGADPAAVLDKIFVYVPDNVSALEAF 181

Query: 182 AYEAFKQAQAKKVDVLIIDT 201
                     +    +++DT
Sbjct: 182 VKSELPAHLKEGARTVVVDT 201


>gi|238650703|ref|YP_002916556.1| Mrp protein [Rickettsia peacockii str. Rustic]
 gi|238624801|gb|ACR47507.1| Mrp protein [Rickettsia peacockii str. Rustic]
          Length = 319

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 68  EELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           EE+  K   K  ++S    +  V      M   + KP ++  + +  +++  G  GVGK+
Sbjct: 53  EEIRLKAINKLNEISEVNKITIVFTESKPMEKKVQKPKHFVENVKKIILVASGKGGVGKS 112

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTF 150
           T+   +++++S A  +V +   D +
Sbjct: 113 TISALIAQQLSLANYRVGIVDADIY 137


>gi|256389304|ref|YP_003110868.1| hypothetical protein Caci_0072 [Catenulispora acidiphila DSM 44928]
 gi|256355530|gb|ACU69027.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928]
          Length = 325

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I +VG  G GKTTV   L + ++  G  V+    D
Sbjct: 3   IALVGKGGSGKTTVSALLIRHLAAGGRPVLAVDAD 37


>gi|160331476|ref|XP_001712445.1| ATP/GTPbp [Hemiselmis andersenii]
 gi|159765893|gb|ABW98120.1| ATP/GTPbp [Hemiselmis andersenii]
          Length = 339

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           L K      S +P V+  VG+ G GKTT++ ++S  +S       +   D
Sbjct: 3   LQKSTVLKSSRKPLVLFFVGMAGSGKTTLVHRISLDLSYLKKTHYILNLD 52


>gi|121535285|ref|ZP_01667099.1| Rhodanese domain protein [Thermosinus carboxydivorans Nor1]
 gi|121306170|gb|EAX47098.1| Rhodanese domain protein [Thermosinus carboxydivorans Nor1]
          Length = 346

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKK 134
           F  RP +I++ G  GVGKT ++GKL+KK
Sbjct: 136 FELRPEIIVICGSTGVGKTALLGKLAKK 163


>gi|84496160|ref|ZP_00995014.1| anion-transporting ATPase [Janibacter sp. HTCC2649]
 gi|84382928|gb|EAP98809.1| anion-transporting ATPase [Janibacter sp. HTCC2649]
          Length = 421

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           P V+LV G  GVGKTT    ++ + + AG + ++ + D 
Sbjct: 20  PRVVLVTGKGGVGKTTTAAAMAVESARAGRRTLVMSTDV 58


>gi|297580543|ref|ZP_06942469.1| MSHA biogenesis protein MshE [Vibrio cholerae RC385]
 gi|297534959|gb|EFH73794.1| MSHA biogenesis protein MshE [Vibrio cholerae RC385]
          Length = 575

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           V +L    + P           RPH  ILV G  G GKTT +     +++ +G K++ A 
Sbjct: 292 VRKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAE 351

Query: 147 GDT-FRSAAIDQLKIWADRT 165
               +R + I+Q+++     
Sbjct: 352 DPVEYRISRINQVQVNPKIN 371


>gi|323191862|gb|EFZ77110.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
          Length = 625

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 140 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 195

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 196 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 239

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 240 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 285


>gi|323142254|ref|ZP_08077088.1| putative selenium-dependent hydroxylase accessory protein YqeC
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413317|gb|EFY04202.1| putative selenium-dependent hydroxylase accessory protein YqeC
           [Phascolarctobacterium sp. YIT 12067]
          Length = 233

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 25/160 (15%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK-------VMLAAGDTFRSA- 153
           PF++    + H I +VG  G GKTTV+ +L+   +  G +        +L   D   +  
Sbjct: 5   PFDFFTDGKKHNICLVG--GGGKTTVMYELAAAWAACGRRVLVLTSTHILCPADGSFAGD 62

Query: 154 --AIDQLKIWADR--TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
             A+  L               +   +      YEA K     + DV++ +  G  H+  
Sbjct: 63  VPAVQNLWQQGRYAVIGTPEFATGKLTLPPQSVYEALK----LQADVILCEADGSRHHPC 118

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            + A    +I       P     VL V       N+L+Q 
Sbjct: 119 KVPAEYEPVI------LPD-SDIVLAVAGMDALGNSLQQA 151


>gi|320202092|gb|EFW76667.1| Cell division protein FtsH [Escherichia coli EC4100B]
          Length = 555

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 70  EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 125

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 126 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 169

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 170 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 215


>gi|296273085|ref|YP_003655716.1| AAA ATPase central domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097259|gb|ADG93209.1| AAA ATPase central domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 493

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 21/183 (11%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E +      KDV+    + +  E I + L    K F +     P  +L+ G  GVGKT 
Sbjct: 106 IEVVKPNTTFKDVAGIAQVKEELEEIVEFLHNPKKYFKYGIKL-PKGVLLYGPPGVGKT- 163

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
               +++ ++                A+  Q+          +V           A    
Sbjct: 164 ---LIARAVAGESNVPFFYQSG----ASFVQI----------YVGMGAKRVRELFAKAKV 206

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
                  +D   ID  G+             +  +L ++D     + + V+ AT     L
Sbjct: 207 NAPSIIFIDE--IDAIGKERGGKSNDERESTLNELLTQMDGFEGDNGVIVIAATNKIEVL 264

Query: 247 RQV 249
              
Sbjct: 265 DDA 267


>gi|317131420|ref|YP_004090734.1| ABC transporter transmembrane region [Ethanoligenens harbinense
           YUAN-3]
 gi|315469399|gb|ADU26003.1| ABC transporter transmembrane region [Ethanoligenens harbinense
           YUAN-3]
          Length = 764

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            PL +  N     +   I +VG  G GKTT++  L +     G K+     DT
Sbjct: 532 EPLMEDMNLHV-KKGDTIAIVGPTGAGKTTLVNLLMRFYEIKGGKITFDGVDT 583


>gi|283836276|ref|ZP_06356017.1| ATP-dependent metallopeptidase HflB [Citrobacter youngae ATCC
           29220]
 gi|291067639|gb|EFE05748.1| ATP-dependent metallopeptidase HflB [Citrobacter youngae ATCC
           29220]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|326625046|gb|EGE31391.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|212711878|ref|ZP_03320006.1| hypothetical protein PROVALCAL_02953 [Providencia alcalifaciens DSM
           30120]
 gi|212685400|gb|EEB44928.1| hypothetical protein PROVALCAL_02953 [Providencia alcalifaciens DSM
           30120]
          Length = 1299

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 22/159 (13%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + V +  VE+   K   K +++ +++Y  +     + +   K   +D   +  V+++ G 
Sbjct: 43  IDVIKGDVEKAKQKVEKKRLNMPKIVYPEN-----LPVSQKKQAIFDAISQHQVVIIAGE 97

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADF 169
            G GKTT I K+  ++   G+K  +      R AA       A                F
Sbjct: 98  TGSGKTTQIPKICLEL-GRGVKGFIGHTQPRRLAARSVASRLAQELECELGTNVGYKVRF 156

Query: 170 VCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTA 202
                 +    L  +    A+ +        D +IID A
Sbjct: 157 SDQVSDTTQVKLMTDGILLAELQNDKLLLQYDTIIIDEA 195


>gi|198242374|ref|YP_002217268.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197936890|gb|ACH74223.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 647

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|197264149|ref|ZP_03164223.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197242404|gb|EDY25024.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 647

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|195401465|ref|XP_002059333.1| GJ18392 [Drosophila virilis]
 gi|194142339|gb|EDW58745.1| GJ18392 [Drosophila virilis]
          Length = 5496

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 16/93 (17%)

Query: 61   AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            AV++ I++ +   +   D+   R +  ++ L  K L    +P           +L+VG  
Sbjct: 1420 AVSRSILDAIRNFKQRGDIVWTRNMTRMAVLTAKAL-QFDEP-----------VLLVGPT 1467

Query: 121  GVGKTTVIGKLSK----KMSDAGLKVMLAAGDT 149
            G GKTTV   L+     ++      +     D 
Sbjct: 1468 GCGKTTVCQLLASIAQVRLRILNCHMHTEGADF 1500


>gi|149927343|ref|ZP_01915598.1| ATP-dependent helicase HrpA [Limnobacter sp. MED105]
 gi|149823835|gb|EDM83060.1| ATP-dependent helicase HrpA [Limnobacter sp. MED105]
          Length = 1289

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 67/190 (35%), Gaps = 38/190 (20%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++ L   RY +++ V +   ++  LI                    V++V G  G GKTT
Sbjct: 8   LQSLPEIRYPEELPVSQRREEIKALIA----------------SNQVVIVCGETGSGKTT 51

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---FVCSEIGSDAAALAY 183
            + K+  ++        +      R AA    K  A   +++   +V  +I     + A 
Sbjct: 52  QLPKMCLELGRGLKGQSIVHTQPRRLAATATAKRIAQELNSELGQWVGFKIRFQDQSNAN 111

Query: 184 EAFKQAQA-------------KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            A K                 KK D +IID A     +  +   +G +  VL +     P
Sbjct: 112 TAVKLVTDGILLAESQTDPLFKKYDTIIIDEA--HERSLNIDFLLGYLKEVLTKR----P 165

Query: 231 HSVLQVLDAT 240
              L V  AT
Sbjct: 166 DLKLIVTSAT 175


>gi|49533783|gb|AAT66781.1| Putative disease resistance protein, identical [Solanum demissum]
          Length = 764

 Score = 38.7 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 15/115 (13%)

Query: 47  EELEDLLIRSDIG-VAVAQKI-VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           EELE       IG + + + +   +  T+  +  V  +  +      I  ++  L     
Sbjct: 118 EELEKQ-----IGCLDLTKYLDSGKQETRESSTSVVDESDILGRQNEIEGLMDRLLSE-- 170

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIG------KLSKKMSDAGLKVMLAAGDTFRSA 153
                 P VI VVG+ GVGKTT+        K+           +    D  R  
Sbjct: 171 DGNGKYPTVIPVVGMGGVGKTTLAKAVYNDEKVKNHFRLKAWICVSEPYDILRIT 225


>gi|302764360|ref|XP_002965601.1| hypothetical protein SELMODRAFT_167789 [Selaginella moellendorffii]
 gi|300166415|gb|EFJ33021.1| hypothetical protein SELMODRAFT_167789 [Selaginella moellendorffii]
          Length = 858

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 26/189 (13%)

Query: 69  ELLTKRYAKDVSVQRV--------LYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVG 118
            L  K+ +KD   +          + +  E + +++  L  P  +    +  P  +L+VG
Sbjct: 350 RLRNKKDSKDRDREGPIMFADVAGVDEAKEELEEIVEFLRSPERYARLGARPPRGVLLVG 409

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             G GKT     L+K ++       ++      ++   +L +    +    + +    +A
Sbjct: 410 PPGTGKT----LLAKAVAGEASVPFISCS----ASEFVELYVGMGASRVRELFARAKKNA 461

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            ++ +     A AK  D       GRL + S        + ++L  LD     S + V+ 
Sbjct: 462 PSIVFIDEIDAVAKGRD-------GRLRSVSNDERE-QTLNQLLTELDGFESASTVIVIG 513

Query: 239 ATTGQNALR 247
           AT   + L 
Sbjct: 514 ATNRADVLD 522


>gi|302769330|ref|XP_002968084.1| hypothetical protein SELMODRAFT_440261 [Selaginella moellendorffii]
 gi|300163728|gb|EFJ30338.1| hypothetical protein SELMODRAFT_440261 [Selaginella moellendorffii]
          Length = 857

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 26/189 (13%)

Query: 69  ELLTKRYAKDVSVQRV--------LYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVG 118
            L  K+ +KD   +          + +  E + +++  L  P  +    +  P  +L+VG
Sbjct: 349 RLRNKKDSKDRDREGPIMFADVAGVDEAKEELEEIVEFLRSPERYARLGARPPRGVLLVG 408

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             G GKT     L+K ++       ++      ++   +L +    +    + +    +A
Sbjct: 409 PPGTGKT----LLAKAVAGEASVPFISCS----ASEFVELYVGMGASRVRELFARAKKNA 460

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            ++ +     A AK  D       GRL + S        + ++L  LD     S + V+ 
Sbjct: 461 PSIVFIDEIDAVAKGRD-------GRLRSVSNDERE-QTLNQLLTELDGFESASTVIVIG 512

Query: 239 ATTGQNALR 247
           AT   + L 
Sbjct: 513 ATNRADVLD 521


>gi|302657316|ref|XP_003020382.1| hypothetical protein TRV_05500 [Trichophyton verrucosum HKI 0517]
 gi|291184212|gb|EFE39764.1| hypothetical protein TRV_05500 [Trichophyton verrucosum HKI 0517]
          Length = 672

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA-GDTFRSAAI 155
           M L++        RP VI + GV+G GKTT++ +L + + D  L    +   D      +
Sbjct: 1   MALAQTIQSSARERPVVIGLYGVSGSGKTTLLNQLRRTLKDDFLFYEGSQVIDEVTPGGL 60

Query: 156 DQLKIWADRTSAD 168
            Q K W+      
Sbjct: 61  AQFKAWSRERQMT 73


>gi|289524163|ref|ZP_06441017.1| conserved hypothetical protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502819|gb|EFD23983.1| conserved hypothetical protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 207

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            + +P  ++ +G  G GKT+    L   +S       + + D  R +   Q+    +   
Sbjct: 25  AAPKPVALIPIGPQGCGKTS----LGLYLSRKIRSFEMISQDEIRKSLFLQMYPEENGVG 80

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
            + +   +      +  +A +  ++   +V+ +D
Sbjct: 81  FERIYEVLRPKEPEIRRKAIEALKSSTKEVVYVD 114


>gi|119382786|ref|YP_913842.1| ABC transporter related [Paracoccus denitrificans PD1222]
 gi|119372553|gb|ABL68146.1| ABC transporter related protein [Paracoccus denitrificans PD1222]
          Length = 239

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 6/140 (4%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR----SAAIDQLKIWADRTSADFVC 171
           ++GVNG GKTT+   +++   +   ++ +A  D  R    + A   +   +    AD   
Sbjct: 36  LLGVNGAGKTTLFSLITRLYDNRSGRIEVAGHDLRRQPGAALARLGVVFQSRALDADLTV 95

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLI-IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
           ++     AAL     ++A+A+ V+VL  +D + RLH     ++G       + R   H P
Sbjct: 96  AQNLEYHAALHGIPRREARARSVEVLAQVDLSDRLHARVSALSGGQSRRAEIARALIHRP 155

Query: 231 HSVLQVLDATTGQNALRQVE 250
             +L + +AT G +   + E
Sbjct: 156 -EILLLDEATVGLDVKSRAE 174


>gi|50310595|ref|XP_455317.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644453|emb|CAG98025.1| KLLA0F05225p [Kluyveromyces lactis]
          Length = 181

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           M +  SK F+  F H+   IL+VG++G GKTTV+ KL  
Sbjct: 1   MGVSFSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKL 39


>gi|57526689|ref|NP_998562.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Danio rerio]
 gi|38173875|gb|AAH60925.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Danio rerio]
 gi|94734578|emb|CAK04919.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Danio rerio]
          Length = 536

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 13/117 (11%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+     +     
Sbjct: 34  LANPPTVIVMVGLPARGKTYMSRKLTRYLNWIGIPTKVFNVGEYRREAVKHYSSY----- 88

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKV-------DVLIIDTAGRLHNNSILMAGIG 216
            DF  S+           A    +  K         V + D      +   ++   G
Sbjct: 89  -DFFKSDNEDAVKIRQQCALAALRDVKNYLTEEDGQVAVFDATNTTRDRRDMILEFG 144


>gi|47459345|ref|YP_016207.1| ABC-type multidrug/protein/lipid transport system ATPase component
           [Mycoplasma mobile 163K]
 gi|47458675|gb|AAT27996.1| ABC-type multidrug/protein/lipid transport system ATPase component
           [Mycoplasma mobile 163K]
          Length = 631

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           IV+ +  K   K+++                 P+ K  N+  ++    I +VG  G GKT
Sbjct: 381 IVKNIKGKIEVKNLNFSYDGK----------TPVLKNINF-IANPGETIAIVGPTGSGKT 429

Query: 126 TVIGKLSKKMSDA 138
           T I  L+K  +  
Sbjct: 430 TFINLLTKFYNVE 442


>gi|319760243|ref|YP_004124181.1| cell division protease ftsH [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318038957|gb|ADV33507.1| cell division protease ftsH [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 645

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  IL+VG  G GKT     L+K ++        
Sbjct: 161 EAKEEVKELVDYLREPNKFKKLGGKIPKGILMVGPPGTGKT----LLAKAIAGESKVPFF 216

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 217 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKSAPCIIF-IDEIDAVGR 260

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 261 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 306


>gi|312143861|ref|YP_003995307.1| AAA ATPase [Halanaerobium sp. 'sapolanicus']
 gi|311904512|gb|ADQ14953.1| AAA ATPase [Halanaerobium sp. 'sapolanicus']
          Length = 549

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           K+     ++        K +  ++         R  +IL+ G    GKTT   +L+ ++ 
Sbjct: 250 KNNKHNELIRIAEAFHEKKIAKIADQIKEGMP-RNKIILIAGPTSSGKTTFTHRLANQLK 308

Query: 137 DAGLKVMLAAGDTF 150
              L+ +  + D +
Sbjct: 309 INALRPVQMSVDNY 322


>gi|240949545|ref|ZP_04753885.1| putative ATPase [Actinobacillus minor NM305]
 gi|240296118|gb|EER46779.1| putative ATPase [Actinobacillus minor NM305]
          Length = 365

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 11/116 (9%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV--GVNGVGKTT 126
           ++ T+   K+++    +  V   ++  +  L +  N    +    I+ V  G  GVGK+T
Sbjct: 62  KVATEEKLKEITGASGVKWV---LNYNIATLKRANNHPAVNGVKNIIAVTSGKGGVGKST 118

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRS------AAIDQLKIWADRTSADFVCSEIGS 176
               L+  +   G KV +   D +         A DQ     D      V      
Sbjct: 119 TSVNLALALKAQGAKVGILDADIYGPSIPHMLGAKDQRPTSPDNKHITPVEVYGIQ 174


>gi|229512663|ref|ZP_04402132.1| MSHA biogenesis protein MshE [Vibrio cholerae TMA 21]
 gi|229350340|gb|EEO15291.1| MSHA biogenesis protein MshE [Vibrio cholerae TMA 21]
          Length = 575

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           V +L    + P           RPH  ILV G  G GKTT +     +++ +G K++ A 
Sbjct: 292 VRKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAE 351

Query: 147 GDT-FRSAAIDQLKIWADRT 165
               +R + I+Q+++     
Sbjct: 352 DPVEYRISRINQVQVNPKIN 371


>gi|229530250|ref|ZP_04419638.1| MSHA biogenesis protein MshE [Vibrio cholerae 12129(1)]
 gi|229332023|gb|EEN97511.1| MSHA biogenesis protein MshE [Vibrio cholerae 12129(1)]
 gi|327483262|gb|AEA77669.1| MSHA biogenesis protein MshE [Vibrio cholerae LMA3894-4]
          Length = 575

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           V +L    + P           RPH  ILV G  G GKTT +     +++ +G K++ A 
Sbjct: 292 VRKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAE 351

Query: 147 GDT-FRSAAIDQLKIWADRT 165
               +R + I+Q+++     
Sbjct: 352 DPVEYRISRINQVQVNPKIN 371


>gi|194735810|ref|YP_002116244.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197301021|ref|ZP_02663053.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|200387470|ref|ZP_03214082.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|194711312|gb|ACF90533.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197289144|gb|EDY28513.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604568|gb|EDZ03113.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 647

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|47124789|gb|AAH70776.1| LOC431861 protein [Xenopus laevis]
          Length = 581

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 29/50 (58%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
            F++ P VI++VG+   GKT +  KL++ ++ +G+   +     +R  A+
Sbjct: 102 QFANSPTVIVMVGLPARGKTYISKKLTRYLNWSGVPTKVFNVGEYRREAV 151


>gi|63101215|gb|AAH94477.1| LOC431861 protein [Xenopus laevis]
          Length = 580

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 29/50 (58%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
            F++ P VI++VG+   GKT +  KL++ ++ +G+   +     +R  A+
Sbjct: 101 QFANSPTVIVMVGLPARGKTYISKKLTRYLNWSGVPTKVFNVGEYRREAV 150


>gi|150016979|ref|YP_001309233.1| arsenite-activated ATPase ArsA [Clostridium beijerinckii NCIMB
           8052]
 gi|149903444|gb|ABR34277.1| arsenite-activated ATPase ArsA [Clostridium beijerinckii NCIMB
           8052]
          Length = 582

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 82  QRVLYDVSELIHKM-LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           +  +    E ++ + +  L       ++    VI  +G  GVGKTT+   ++  ++  G 
Sbjct: 296 KDYIKISEESLNAVAMPKLKDVIEDLYNSSKKVIFTMGKGGVGKTTIAASIALGLAKKGK 355

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           KV L   D    AA  +  +  +         +   +      E   +A+   +
Sbjct: 356 KVHLTTTD---PAAHLKF-VLDESYGISLSNIDEKEELEKYRQEVIGKARENNM 405


>gi|120599745|ref|YP_964319.1| arsenite-activated ATPase ArsA [Shewanella sp. W3-18-1]
 gi|120559838|gb|ABM25765.1| arsenite-activated ATPase ArsA [Shewanella sp. W3-18-1]
          Length = 590

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ ++++ GL V L   D    AA  +  +     +      +
Sbjct: 335 IMLMGKGGVGKTTLAAAIAVRLAELGLDVHLTTSD---PAAHLEDTLHGQLANLQVSRID 391

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                     +              +D  G+      L +   + I V + 
Sbjct: 392 PVDVTTRYREQVLATKGKD------LDAQGKALLEEDLRSPCTEEIAVFQA 436


>gi|15640432|ref|NP_230059.1| MSHA biogenesis protein MshE [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587608|ref|ZP_01677373.1| MSHA biogenesis protein MshE [Vibrio cholerae 2740-80]
 gi|121727271|ref|ZP_01680430.1| MSHA biogenesis protein MshE [Vibrio cholerae V52]
 gi|147673996|ref|YP_001218673.1| MSHA biogenesis protein MshE [Vibrio cholerae O395]
 gi|153802220|ref|ZP_01956806.1| MSHA biogenesis protein MshE [Vibrio cholerae MZO-3]
 gi|153818245|ref|ZP_01970912.1| MSHA biogenesis protein MshE [Vibrio cholerae NCTC 8457]
 gi|153822257|ref|ZP_01974924.1| MSHA biogenesis protein MshE [Vibrio cholerae B33]
 gi|227080616|ref|YP_002809167.1| MSHA biogenesis protein MshE [Vibrio cholerae M66-2]
 gi|229507045|ref|ZP_04396551.1| MSHA biogenesis protein MshE [Vibrio cholerae BX 330286]
 gi|229508800|ref|ZP_04398292.1| MSHA biogenesis protein MshE [Vibrio cholerae B33]
 gi|229519788|ref|ZP_04409231.1| MSHA biogenesis protein MshE [Vibrio cholerae RC9]
 gi|229606313|ref|YP_002876961.1| MSHA biogenesis protein MshE [Vibrio cholerae MJ-1236]
 gi|254226014|ref|ZP_04919614.1| MSHA biogenesis protein MshE [Vibrio cholerae V51]
 gi|254850637|ref|ZP_05239987.1| MSHA biogenesis protein MshE [Vibrio cholerae MO10]
 gi|262153597|ref|ZP_06028725.1| MSHA biogenesis protein MshE [Vibrio cholerae INDRE 91/1]
 gi|262167631|ref|ZP_06035335.1| MSHA biogenesis protein MshE [Vibrio cholerae RC27]
 gi|298501062|ref|ZP_07010863.1| MSHA biogenesis protein MshE [Vibrio cholerae MAK 757]
 gi|9654826|gb|AAF93578.1| MSHA biogenesis protein MshE [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548181|gb|EAX58253.1| MSHA biogenesis protein MshE [Vibrio cholerae 2740-80]
 gi|121630390|gb|EAX62785.1| MSHA biogenesis protein MshE [Vibrio cholerae V52]
 gi|124122244|gb|EAY40987.1| MSHA biogenesis protein MshE [Vibrio cholerae MZO-3]
 gi|125621470|gb|EAZ49804.1| MSHA biogenesis protein MshE [Vibrio cholerae V51]
 gi|126511204|gb|EAZ73798.1| MSHA biogenesis protein MshE [Vibrio cholerae NCTC 8457]
 gi|126520213|gb|EAZ77436.1| MSHA biogenesis protein MshE [Vibrio cholerae B33]
 gi|146315879|gb|ABQ20418.1| MSHA biogenesis protein MshE [Vibrio cholerae O395]
 gi|227008504|gb|ACP04716.1| MSHA biogenesis protein MshE [Vibrio cholerae M66-2]
 gi|227012260|gb|ACP08470.1| MSHA biogenesis protein MshE [Vibrio cholerae O395]
 gi|229344477|gb|EEO09452.1| MSHA biogenesis protein MshE [Vibrio cholerae RC9]
 gi|229354203|gb|EEO19134.1| MSHA biogenesis protein MshE [Vibrio cholerae B33]
 gi|229355790|gb|EEO20710.1| MSHA biogenesis protein MshE [Vibrio cholerae BX 330286]
 gi|229368968|gb|ACQ59391.1| MSHA biogenesis protein MshE [Vibrio cholerae MJ-1236]
 gi|254846342|gb|EET24756.1| MSHA biogenesis protein MshE [Vibrio cholerae MO10]
 gi|262023967|gb|EEY42664.1| MSHA biogenesis protein MshE [Vibrio cholerae RC27]
 gi|262030624|gb|EEY49260.1| MSHA biogenesis protein MshE [Vibrio cholerae INDRE 91/1]
 gi|297540310|gb|EFH76370.1| MSHA biogenesis protein MshE [Vibrio cholerae MAK 757]
          Length = 575

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           V +L    + P           RPH  ILV G  G GKTT +     +++ +G K++ A 
Sbjct: 292 VRKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAE 351

Query: 147 GDT-FRSAAIDQLKIWADRT 165
               +R + I+Q+++     
Sbjct: 352 DPVEYRISRINQVQVNPKIN 371


>gi|327482032|gb|AEA85342.1| cell division protein FtsH [Pseudomonas stutzeri DSM 4166]
          Length = 640

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E +H+++  L  P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 164 EAKEEVHELVEFLRDPGKFQRLGGRIPRGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 219

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 220 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKHAPCIIF-IDEIDAVGR 263

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                           + ++L  +D    +  + V+ AT   + L 
Sbjct: 264 HRGAGLGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLD 309


>gi|301094688|ref|XP_002896448.1| GPN-loop GTPase 1 [Phytophthora infestans T30-4]
 gi|262109423|gb|EEY67475.1| GPN-loop GTPase 1 [Phytophthora infestans T30-4]
          Length = 345

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 25/40 (62%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            +P  +LV+G+ G GKTT++ +L+    D+GL+  +   D
Sbjct: 36  PKPVTVLVIGMAGSGKTTLMQRLAAYGVDSGLRNYIINLD 75


>gi|237751316|ref|ZP_04581796.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229372682|gb|EEO23073.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 356

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 79/231 (34%), Gaps = 19/231 (8%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
              V +K+ EE+L K  +  ++    +  V+  I K     + P N   S +  V++  G
Sbjct: 47  NEEVIKKVKEEILEKTKSLPLA-NIDIEIVTPNIQKAQTEQA-PKNLAPSIKHFVMVSSG 104

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
             GVGK+T    L+  ++ +G KV L   D +                 D V  +     
Sbjct: 105 KGGVGKSTTSVNLAISLAKSGKKVGLLDADIYGPN-------VPRMFGLDGVEPKTSQ-- 155

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL--DPHAPHSVLQV 236
                +  K    ++  V +I            +     ++R++ +L  D       + V
Sbjct: 156 -----DGKKLLPLEQYGVKMISIESIYGKGQSFIWRGPVVMRIITQLLQDVEWGELDIMV 210

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMT-KMDGTARGGGLIPIVVTHKIPV 286
           +D   G    +         G    + T +M     G   + +     IP+
Sbjct: 211 VDMPPGTGDAQLTLAQSVPVGAGINVTTPQMVAIDDGFRALDMFAKCNIPI 261


>gi|237730098|ref|ZP_04560579.1| ATP-dependent metalloprotease [Citrobacter sp. 30_2]
 gi|226908704|gb|EEH94622.1| ATP-dependent metalloprotease [Citrobacter sp. 30_2]
          Length = 647

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|282600512|ref|ZP_06257619.1| conserved hypothetical protein [Providencia rustigianii DSM 4541]
 gi|282564931|gb|EFB70466.1| conserved hypothetical protein [Providencia rustigianii DSM 4541]
          Length = 232

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 10/110 (9%)

Query: 103 FNWDFSHRPHVILVVGV----NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           F      +  V +++       GVGKTT    ++  +      V++   D  R      L
Sbjct: 4   FTTTIQRKYEVFMILVFASDKGGVGKTTTAINMAVMLKKKNKSVIMLKADRNR-----DL 58

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +W+D  +     +    +A     E  K+ +    DV+I+D AG   + 
Sbjct: 59  FVWSDIRAQAGFSAIPIHEAYGNISEDIKRLEEL-CDVIIVDCAGHDSSE 107


>gi|226322934|ref|ZP_03798452.1| hypothetical protein COPCOM_00706 [Coprococcus comes ATCC 27758]
 gi|225208720|gb|EEG91074.1| hypothetical protein COPCOM_00706 [Coprococcus comes ATCC 27758]
          Length = 518

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +  ++L++  +L+     PLSKP N+    R H I +VG NG+GKTT +
Sbjct: 320 TPGKMLFETKDLVIGYDEPLSKPLNFQME-RGHKIAIVGTNGIGKTTFL 367


>gi|225571621|ref|ZP_03780617.1| hypothetical protein CLOHYLEM_07719 [Clostridium hylemonae DSM
           15053]
 gi|225159698|gb|EEG72317.1| hypothetical protein CLOHYLEM_07719 [Clostridium hylemonae DSM
           15053]
          Length = 158

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            RP++  V G    GKTT+I KL  ++   G KV +   D
Sbjct: 7   GRPYIYAVSGFKNTGKTTLITKLIPELKSRGYKVAVIKHD 46


>gi|189502333|ref|YP_001958050.1| hypothetical protein Aasi_0963 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497774|gb|ACE06321.1| hypothetical protein Aasi_0963 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 1550

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 21/138 (15%)

Query: 16  KLTKG---FASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +LT+      +   K++  +  + ++      +++ LED  I +     + +++      
Sbjct: 647 RLTEKRGQVEALRDKMQRSLKVLSAA-----SIKKTLEDSNIDA-----LTKQL-----E 691

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKL 131
           KR  K  S Q   Y     +   L    K            I V+ G  GVGK+T++ + 
Sbjct: 692 KRSIKQFS-QLHNYIAQAKLTTYLAREDKQQELSQKLEKSGICVIYGHGGVGKSTLVAQY 750

Query: 132 SKKMSDAGLKVMLAAGDT 149
                     V     +T
Sbjct: 751 GHN-QKGKQLVWWMQAET 767


>gi|105923156|gb|ABF81460.1| TIR-NBS type disease resistance protein [Populus trichocarpa]
          Length = 697

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 21/139 (15%)

Query: 23  STSLKLKEGITDIISSRRLDDGVREELEDLLIRS---------DI--GVAV--AQKIVEE 69
             + +  E         R ++ + +E    L  +         D+  G      ++I+++
Sbjct: 173 KQTGRFAEAFVK--HEERFEEKLVKEWRKALKEAGNLSGWNLNDMANGPEANFVKEIIKD 230

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +L K   K + V   L  +  L   +   LS   +        ++ + G+ G+GKTT I 
Sbjct: 231 VLNKLGPKHLYVPEHLVGMDRLSRNIFYFLSTAIDD-----VQIVGIHGMLGIGKTT-IA 284

Query: 130 KLSKKMSDAGLKVMLAAGD 148
           K+       G +      D
Sbjct: 285 KVVFNQLCNGFEGSCFLSD 303


>gi|45187967|ref|NP_984190.1| ADR094Wp [Ashbya gossypii ATCC 10895]
 gi|51701279|sp|Q75A26|ARF_ASHGO RecName: Full=ADP-ribosylation factor
 gi|44982751|gb|AAS52014.1| ADR094Wp [Ashbya gossypii ATCC 10895]
          Length = 181

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           M +  SK F+  F H+   IL+VG++G GKTTV+ KL  
Sbjct: 1   MGVSFSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKL 39


>gi|16762058|ref|NP_457675.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766592|ref|NP_462207.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29143547|ref|NP_806889.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415225|ref|YP_152300.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161506141|ref|YP_001573253.1| ATP-dependent metalloprotease [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161616303|ref|YP_001590268.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|197364155|ref|YP_002143792.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205354197|ref|YP_002227998.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858544|ref|YP_002245195.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213052988|ref|ZP_03345866.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425426|ref|ZP_03358176.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852786|ref|ZP_03382318.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224585091|ref|YP_002638890.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238910089|ref|ZP_04653926.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289825807|ref|ZP_06544975.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|54037122|sp|P63344|FTSH_SALTI RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|54040797|sp|P63343|FTSH_SALTY RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|25308063|pir||AG0902 cell division protein [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16421854|gb|AAL22166.1| ATP-dependent zinc-metallo protease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504361|emb|CAD07813.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139181|gb|AAO70749.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56129482|gb|AAV78988.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|160867488|gb|ABX24111.1| hypothetical protein SARI_04329 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365667|gb|ABX69435.1| hypothetical protein SPAB_04111 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197095632|emb|CAR61200.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205273978|emb|CAR38984.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710347|emb|CAR34705.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224469619|gb|ACN47449.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248461|emb|CBG26298.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995493|gb|ACY90378.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159845|emb|CBW19364.1| cell division protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914320|dbj|BAJ38294.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320087740|emb|CBY97504.1| cell division protein FtsH [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225979|gb|EFX51033.1| Cell division protein FtsH [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615299|gb|EFY12220.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618342|gb|EFY15233.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622853|gb|EFY19697.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626825|gb|EFY23622.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631394|gb|EFY28154.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635339|gb|EFY32053.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643338|gb|EFY39902.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647090|gb|EFY43591.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648893|gb|EFY45338.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655085|gb|EFY51396.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657688|gb|EFY53956.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664184|gb|EFY60382.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667467|gb|EFY63629.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674715|gb|EFY70807.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675652|gb|EFY71725.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682288|gb|EFY78311.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684891|gb|EFY80889.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131655|gb|ADX19085.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323199021|gb|EFZ84118.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204279|gb|EFZ89288.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207626|gb|EFZ92573.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211321|gb|EFZ96165.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214737|gb|EFZ99486.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221217|gb|EGA05643.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224042|gb|EGA08335.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230309|gb|EGA14428.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233285|gb|EGA17379.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239322|gb|EGA23372.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242427|gb|EGA26453.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246937|gb|EGA30903.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254130|gb|EGA37950.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255247|gb|EGA39024.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262710|gb|EGA46266.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264020|gb|EGA47528.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269406|gb|EGA52861.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326629318|gb|EGE35661.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332990153|gb|AEF09136.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 644

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|229520025|ref|ZP_04409454.1| MSHA biogenesis protein MshE [Vibrio cholerae TM 11079-80]
 gi|229342974|gb|EEO07963.1| MSHA biogenesis protein MshE [Vibrio cholerae TM 11079-80]
          Length = 575

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           V +L    + P           RPH  ILV G  G GKTT +     +++ +G K++ A 
Sbjct: 292 VRKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAE 351

Query: 147 GDT-FRSAAIDQLKIWADRT 165
               +R + I+Q+++     
Sbjct: 352 DPVEYRISRINQVQVNPKIN 371


>gi|153825645|ref|ZP_01978312.1| MSHA biogenesis protein MshE [Vibrio cholerae MZO-2]
 gi|153829297|ref|ZP_01981964.1| MSHA biogenesis protein MshE [Vibrio cholerae 623-39]
 gi|254291310|ref|ZP_04962104.1| MSHA biogenesis protein MshE [Vibrio cholerae AM-19226]
 gi|148875197|gb|EDL73332.1| MSHA biogenesis protein MshE [Vibrio cholerae 623-39]
 gi|149740675|gb|EDM54782.1| MSHA biogenesis protein MshE [Vibrio cholerae MZO-2]
 gi|150422766|gb|EDN14719.1| MSHA biogenesis protein MshE [Vibrio cholerae AM-19226]
          Length = 575

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           V +L    + P           RPH  ILV G  G GKTT +     +++ +G K++ A 
Sbjct: 292 VRKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAE 351

Query: 147 GDT-FRSAAIDQLKIWADRT 165
               +R + I+Q+++     
Sbjct: 352 DPVEYRISRINQVQVNPKIN 371


>gi|153215388|ref|ZP_01949986.1| MSHA biogenesis protein MshE [Vibrio cholerae 1587]
 gi|124114759|gb|EAY33579.1| MSHA biogenesis protein MshE [Vibrio cholerae 1587]
          Length = 575

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           V +L    + P           RPH  ILV G  G GKTT +     +++ +G K++ A 
Sbjct: 292 VRKLEESGIPPHLLLRLHHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAE 351

Query: 147 GDT-FRSAAIDQLKIWADRT 165
               +R + I+Q+++     
Sbjct: 352 DPVEYRISRINQVQVNPKIN 371


>gi|126723384|ref|NP_001075536.1| pregnane x receptor [Oryctolagus cuniculus]
 gi|5853354|gb|AAD54426.1|AF182217_1 pregnane x receptor [Oryctolagus cuniculus]
 gi|6901680|gb|AAF31165.1|AF188476_1 pregnane X receptor [Oryctolagus cuniculus]
          Length = 411

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 16/111 (14%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-----------LDDGVREELEDLLIRSDIG 59
             + R+  K  A      ++G  +I    R           L+ G+++E+    I SD+ 
Sbjct: 39  KGFFRRTVKRNARLRCPFRKGACEITRKTRRQCQACRLRKCLESGMKKEM----IMSDVA 94

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSH 109
           VA  + +++    +R        + L      +I +++    K F+  FSH
Sbjct: 95  VAQRRALIKRKKRERMEAQPPGMQGLTGEQRMIIEELMDAQMKTFDTTFSH 145


>gi|115360263|ref|YP_777401.1| hypothetical protein Bamb_5520 [Burkholderia ambifaria AMMD]
 gi|115285551|gb|ABI91067.1| conserved hypothetical protein [Burkholderia ambifaria AMMD]
          Length = 219

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 18/87 (20%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLK-------VMLAAGDTFR------SAA-----IDQ 157
           ++G  G GKTTV   ++ +++   L           +  D  R       AA      +Q
Sbjct: 14  LIGPGGAGKTTVGALVAARLNWRCLDVDQYFLAAHGSIADFIRDRGYVEYAAHNVRLYEQ 73

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYE 184
           LK      +   + S        +A  
Sbjct: 74  LKRGTSVPTICVMSSGFMLYPPEVAPA 100


>gi|316976545|gb|EFV59822.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Trichinella
           spiralis]
          Length = 506

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+VI++VG+   GKT +  KL + ++  G+   +     +R       K  A      F 
Sbjct: 72  PNVIIMVGLPARGKTYIAKKLCRYLNWIGITTKVFNLGDYR---RTFFKDHASCDD-FFN 127

Query: 171 CS--EIGSDAAALAYEAFK----QAQAKKVDVLIIDTA 202
               E        A  A +      +  + DV I D  
Sbjct: 128 PQNRETAQIRQQCADLALQDVCRYLKENRGDVAIFDAT 165


>gi|302550687|ref|ZP_07303029.1| LOW QUALITY PROTEIN: ABC transporter [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468305|gb|EFL31398.1| LOW QUALITY PROTEIN: ABC transporter [Streptomyces
           viridochromogenes DSM 40736]
          Length = 655

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML-----AAGDTFRSA 153
           ++ +VG NG GKTT++  L+   +    +++      A  D  R A
Sbjct: 416 IVALVGENGSGKTTLVKLLAGLYTPERGRIVWDDVDAATADRHRLA 461


>gi|298292312|ref|YP_003694251.1| ABC transporter [Starkeya novella DSM 506]
 gi|296928823|gb|ADH89632.1| ABC transporter related protein [Starkeya novella DSM 506]
          Length = 551

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 13/101 (12%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMP---LSKPF-------NWDFSHRPHVIL-V 116
           +EL+ K   K  +  +++  V+E +   ++    LSK +       +  F   P  I+ V
Sbjct: 291 DELVKKASEKAPTTAQIVIPVAERLGNNVIDFQHLSKGYGDNLLIDDLSFKLPPGGIVGV 350

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           +G NG GKTT+   ++    +      +  GD+ +   +DQ
Sbjct: 351 IGPNGAGKTTLFRMIAG--QEKPDAGTITIGDSVKLGYVDQ 389


>gi|281417052|ref|ZP_06248072.1| phosphoribulokinase/uridine kinase [Clostridium thermocellum JW20]
 gi|281408454|gb|EFB38712.1| phosphoribulokinase/uridine kinase [Clostridium thermocellum JW20]
          Length = 557

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 51/160 (31%)

Query: 1   MSNQKVASESLSWIRKLTKGFA-----STSLKL-----KEGITDIISSRRLDDGVREELE 50
           MS +K + +++   ++  K F+         K+        + DI+   ++++       
Sbjct: 213 MSPEKTSPDAIPQFKEQKKLFSIFAEYKKWGKILGVEDVSALNDIVKEGKINE------- 265

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
             LI          ++ E L  K+ A+              I  M+      FN    H+
Sbjct: 266 --LI----------RVAEALHEKKIAQ--------------IADMI-----AFN---EHK 291

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
             V+L+ G +  GKTT   +LS ++   GL+ +  + D +
Sbjct: 292 KKVVLIAGPSSSGKTTFAHRLSIQLKVNGLRPVTISLDDY 331


>gi|262279670|ref|ZP_06057455.1| ATP-dependent helicase HrpA [Acinetobacter calcoaceticus RUH2202]
 gi|262260021|gb|EEY78754.1| ATP-dependent helicase HrpA [Acinetobacter calcoaceticus RUH2202]
          Length = 1294

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 80/223 (35%), Gaps = 33/223 (14%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFSHRP 111
           +R D     A+  +E+L  +  AK   V++    + E+     +P+S+  +   D   + 
Sbjct: 31  LRKDKKANTAE--IEKLFEQSNAK---VRQRFARLPEIKLNQELPVSQYADRLIDAIQKH 85

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----- 166
            VI+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+        
Sbjct: 86  QVIIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGEKLGE 144

Query: 167 -----ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSILMAGI 215
                  F           L  +    A+          D +IID A     N   + G 
Sbjct: 145 SIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYDTIIIDEAHERSLNIDFIMGY 204

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
                 LK+L P  P   + V  AT     + +   +   A  
Sbjct: 205 ------LKQLLPKRPDLKVIVTSATL---DVNRFSNYFNDAPI 238


>gi|219684932|ref|ZP_03539873.1| ATP-dependent Clp protease, subunit C [Borrelia garinii PBr]
 gi|219671670|gb|EED28726.1| ATP-dependent Clp protease, subunit C [Borrelia garinii PBr]
          Length = 739

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 21/105 (20%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           TS  +++ I++I+S  +  + ++EE+ +L               +E+ +K   K +  + 
Sbjct: 408 TSNDIQKAISEILS-IKTTNNIKEEILEL---------------KEVESKINQKVIGQKH 451

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            + ++ + I K+ + L+     D S     IL++G NG GKTT+ 
Sbjct: 452 AVSELIKEIIKVKLGLN-----DDSKPLTSILLIGSNGCGKTTLT 491


>gi|158522608|ref|YP_001530478.1| cobyrinic acid ac-diamide synthase [Desulfococcus oleovorans Hxd3]
 gi|158511434|gb|ABW68401.1| Cobyrinic acid ac-diamide synthase [Desulfococcus oleovorans Hxd3]
          Length = 261

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            +  V +  G  GVGKTT    L+  ++  G  V+L   DT   AA
Sbjct: 2   RKIAVAMAKG--GVGKTTTAVTLAHGLAMTGATVVLVDCDTQGQAA 45


>gi|115375324|ref|ZP_01462588.1| adventurous gliding motility protein R [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823715|ref|YP_003956073.1| anion-transporting ATPase [Stigmatella aurantiaca DW4/3-1]
 gi|115367697|gb|EAU66668.1| adventurous gliding motility protein R [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396787|gb|ADO74246.1| Anion-transporting ATPase [Stigmatella aurantiaca DW4/3-1]
          Length = 372

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            P     + +  +I  VG  GVGKTTV   L+ + +  G   ++   D
Sbjct: 4   SPLGPALAQKRVLIC-VGSGGVGKTTVAATLALRAAVEGRSSLVCTID 50


>gi|62181804|ref|YP_218221.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|194442507|ref|YP_002042552.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194447870|ref|YP_002047324.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471603|ref|ZP_03077587.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195873641|ref|ZP_02697399.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197248059|ref|YP_002148220.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205357195|ref|ZP_02345811.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205358490|ref|ZP_02656962.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205359196|ref|ZP_02668061.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205359745|ref|ZP_02831638.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205360607|ref|ZP_02684667.2| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|62129437|gb|AAX67140.1| ATP-dependent zinc-metallo protease [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194401170|gb|ACF61392.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406174|gb|ACF66393.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457967|gb|EDX46806.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195633776|gb|EDX52190.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197211762|gb|ACH49159.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205323245|gb|EDZ11084.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205333758|gb|EDZ20522.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337763|gb|EDZ24527.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343557|gb|EDZ30321.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348591|gb|EDZ35222.1| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|322716291|gb|EFZ07862.1| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 647

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                           + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|83310932|ref|YP_421196.1| oxyanion-translocating ATPase [Magnetospirillum magneticum AMB-1]
 gi|82945773|dbj|BAE50637.1| Oxyanion-translocating ATPase [Magnetospirillum magneticum AMB-1]
          Length = 568

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 14/163 (8%)

Query: 96  LMPLSKPFNWDFSHRPHVILV-VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           L    +    + +   H +++ +G  GVGKT+V   ++  ++  G KV L+  D    AA
Sbjct: 309 LPGGLEALVAEIAASGHGVVMTMGKGGVGKTSVAAAIATALARLGHKVTLSTTD---PAA 365

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM-- 212
             Q  +            +   + A    E   +A         +D AGR      L   
Sbjct: 366 HVQDAVEGKVAGLTVTRIDPEREVADYRDEVLAKAGGT------LDMAGRAMLEEDLRSP 419

Query: 213 --AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
               I       + +D      V+     T     L      +
Sbjct: 420 CTEEIAVFRAFSRTVDEGRDRFVILDTAPTGHTILLLDAAEAY 462


>gi|325300765|ref|YP_004260681.1| putative ParA-like protein [Bacteroides salanitronis DSM 18170]
 gi|324320318|gb|ADY38208.1| putative ParA-related protein [Bacteroides salanitronis DSM 18170]
          Length = 207

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I+V G    G GKTT   + +  +S+ G +V++   D  RS     +    +        
Sbjct: 2   IIVFGNQKGGCGKTTNCAQFANYLSELGKEVLVLDLDFQRSL----MDRREEDIKTYDNE 57

Query: 172 SEIGSDAAALAYEA--FKQAQAKKVDVLIIDTAGRLHNNS 209
            +     A ++  A   +  +      LIID  GR+ N++
Sbjct: 58  PKYEIMEAKISDVAKVIRDFKNVDNGNLIIDLPGRIDNDA 97


>gi|312891044|ref|ZP_07750568.1| ABC transporter related protein [Mucilaginibacter paludis DSM
           18603]
 gi|311296511|gb|EFQ73656.1| ABC transporter related protein [Mucilaginibacter paludis DSM
           18603]
          Length = 591

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM-------SDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           +I +VG NG GK+T+I  L++            G  +     D FR  ++   + +    
Sbjct: 377 IIAIVGENGSGKSTLIKLLARLYNVQTGSIQINGQNIGDLLADDFRRQSVFLFQDFEKYF 436

Query: 166 SADFVCSEIGSDAAALAYEAFK-QAQAKKVDVLIIDTA-------GRLHNNSILMAGIGK 217
                   IG D    A  A +  A+       II  A       GRL   S  ++G   
Sbjct: 437 LTISENITIGDDHTNTAAPAVENAARLSGAHPFIIKLAKGYQTRMGRLFEGSEQISGGQW 496

Query: 218 MIRVLKRLDPHAPHSVLQVLD 238
               L RL        L VLD
Sbjct: 497 QKLALARL--FYKDRQLIVLD 515


>gi|303256970|ref|ZP_07342984.1| ATP-dependent helicase HrpA [Burkholderiales bacterium 1_1_47]
 gi|302860461|gb|EFL83538.1| ATP-dependent helicase HrpA [Burkholderiales bacterium 1_1_47]
          Length = 1381

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR------- 110
           I     QK + E      ++    + ++   +E++  +   L    +   S R       
Sbjct: 96  INAPQEQKDINESKKPAASEKKPSRALVKVGNEVLRNIPPKLELQESLPVSERADEIAEA 155

Query: 111 ---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
                V++V G  G GKTT + K++  M   G K ++      R AA    K  ++   A
Sbjct: 156 IKNNQVVIVSGETGSGKTTQLPKIA-MMVGRGQKGLIGHTQPRRIAATSIAKRISEEMDA 214

Query: 168 DF 169
           + 
Sbjct: 215 EV 216


>gi|262276955|ref|ZP_06054748.1| zinc import ATP-binding protein ZnuC [alpha proteobacterium
           HIMB114]
 gi|262224058|gb|EEY74517.1| zinc import ATP-binding protein ZnuC [alpha proteobacterium
           HIMB114]
          Length = 250

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 16/163 (9%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           K  + + ++   +  + K    L K  +++      ++ ++G NG GKTT   K++  + 
Sbjct: 2   KKNNKKTLVKLENASVEKNKKILVKNISFEVKQG-EIVTLIGPNGSGKTTT-AKMA--LG 57

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                       T +   + Q K+  D T      ++     + +  E   +A       
Sbjct: 58  INENFEGNVQRYTSQIGYVPQ-KVVIDWT-LPIRVNDFMQLTSKINPEEINEA------- 108

Query: 197 LIIDTAGRLH-NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
             +D  G  H  N  L    G   + +      A    L VLD
Sbjct: 109 --LDFTGVDHLKNKNLNELSGGEFQRILIARAIAKKPELLVLD 149


>gi|260600044|ref|YP_003212782.1| Arsenical pump-driving ATPase [Cronobacter turicensis z3032]
 gi|260219391|emb|CBA34743.1| Arsenical pump-driving ATPase [Cronobacter turicensis z3032]
          Length = 482

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ +++D G  V L   D    AA     +     +       
Sbjct: 338 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAAHLSTTLNGSLKNLQVSRIN 394

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    K  D+   D AG+      L +   + I V + 
Sbjct: 395 SHDETERYRQHVLE---TKGRDL---DEAGKRLLEEDLRSPCTEEIAVFQA 439


>gi|297612010|ref|NP_001068078.2| Os11g0551300 [Oryza sativa Japonica Group]
 gi|255680181|dbj|BAF28441.2| Os11g0551300 [Oryza sativa Japonica Group]
          Length = 883

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           V+ L      K ++    + + S+ + KMLM   K           ++ +VG  G+GKTT
Sbjct: 113 VDSLRLSALYKKMTELVGIEEKSDELVKMLMEGDK-------QELKIVSIVGFGGLGKTT 165

Query: 127 VIGKLSK-KMSDAGLKVMLAAG 147
            + K+   K+            
Sbjct: 166 -LAKVVYEKLKVQFACGFFVTM 186


>gi|125577488|gb|EAZ18710.1| hypothetical protein OsJ_34233 [Oryza sativa Japonica Group]
          Length = 874

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           V+ L      K ++    + + S+ + KMLM   K           ++ +VG  G+GKTT
Sbjct: 113 VDSLRLSALYKKMTELVGIEEKSDELVKMLMEGDK-------QELKIVSIVGFGGLGKTT 165

Query: 127 VIGKLSK-KMSDAGLKVMLAAG 147
            + K+   K+            
Sbjct: 166 -LAKVVYEKLKVQFACGFFVTM 186


>gi|108864495|gb|ABA94238.2| NB-ARC domain containing protein, expressed [Oryza sativa Japonica
           Group]
          Length = 867

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           V+ L      K ++    + + S+ + KMLM   K           ++ +VG  G+GKTT
Sbjct: 141 VDSLRLSALYKKMTELVGIEEKSDELVKMLMEGDK-------QELKIVSIVGFGGLGKTT 193

Query: 127 VIGKLSK-KMSDAGLKVMLAAG 147
            + K+   K+            
Sbjct: 194 -LAKVVYEKLKVQFACGFFVTM 214


>gi|321472924|gb|EFX83893.1| hypothetical protein DAPPUDRAFT_315316 [Daphnia pulex]
          Length = 556

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 9/95 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKM------SDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           H  L  G+ G+GKTT    L+  +         G        D+ R+    + +   D  
Sbjct: 62  HGFLFSGMRGIGKTTTARLLACYLNCLNLRQTEGEIEPCGVCDSCRA---FEAEKHIDII 118

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
             D        D   +      +    +  V IID
Sbjct: 119 EMDAASHTGVDDIREILEACRYRPVLGRYKVFIID 153


>gi|262191508|ref|ZP_06049692.1| MSHA biogenesis protein MshE [Vibrio cholerae CT 5369-93]
 gi|262032606|gb|EEY51160.1| MSHA biogenesis protein MshE [Vibrio cholerae CT 5369-93]
          Length = 575

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           V +L    + P           RPH  ILV G  G GKTT +     +++ +G K++ A 
Sbjct: 292 VRKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAE 351

Query: 147 GDT-FRSAAIDQLKIWADRT 165
               +R + I+Q+++     
Sbjct: 352 DPVEYRISRINQVQVNPKIN 371


>gi|255743790|ref|ZP_05417747.1| MSHA biogenesis protein MshE [Vibrio cholera CIRS 101]
 gi|255738539|gb|EET93927.1| MSHA biogenesis protein MshE [Vibrio cholera CIRS 101]
          Length = 575

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           V +L    + P           RPH  ILV G  G GKTT +     +++ +G K++ A 
Sbjct: 292 VRKLEESGIPPHLLLRLRHQLKRPHGMILVTGPTGSGKTTTLYGALNELNTSGKKIITAE 351

Query: 147 GDT-FRSAAIDQLKIWADRT 165
               +R + I+Q+++     
Sbjct: 352 DPVEYRISRINQVQVNPKIN 371


>gi|220925702|ref|YP_002501004.1| plasmid partitioning protein RepA [Methylobacterium nodulans ORS
           2060]
 gi|219950309|gb|ACL60701.1| plasmid partitioning protein RepA [Methylobacterium nodulans ORS
           2060]
          Length = 405

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVN---GVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            P SK +    S   H  ++  VN   G GKTT    L++ ++  G +V+    D
Sbjct: 106 GPKSKRYVPHRSGSEHCQVLAVVNFKGGSGKTTTAAHLAQYLALKGYRVLAVDLD 160


>gi|19705388|ref|NP_602883.1| MRP family nucleotide-binding protein [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|19713377|gb|AAL94182.1| MRP-family nucleotide-binding protein [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 257

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 96  LMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++    P   D  +  +VI ++ G  GVGK+TV   L+K++   G  V +   D
Sbjct: 1   MIQKEAPKVKDDKNIKNVIAVMSGKGGVGKSTVTTLLAKELRKKGYSVGVMDAD 54


>gi|27364177|ref|NP_759705.1| adenylylsulfate kinase [Vibrio vulnificus CMCP6]
 gi|37678598|ref|NP_933207.1| adenylylsulfate kinase [Vibrio vulnificus YJ016]
 gi|320157563|ref|YP_004189942.1| adenylylsulfate kinase [Vibrio vulnificus MO6-24/O]
 gi|29336649|sp|Q8DE75|CYSC_VIBVU RecName: Full=Adenylyl-sulfate kinase; AltName: Full=APS kinase;
           AltName: Full=ATP adenosine-5'-phosphosulfate
           3'-phosphotransferase; AltName:
           Full=Adenosine-5'-phosphosulfate kinase
 gi|56748738|sp|Q7MPF0|CYSC_VIBVY RecName: Full=Adenylyl-sulfate kinase; AltName: Full=APS kinase;
           AltName: Full=ATP adenosine-5'-phosphosulfate
           3'-phosphotransferase; AltName:
           Full=Adenosine-5'-phosphosulfate kinase
 gi|27360295|gb|AAO09232.1| Adenylylsulfate kinase [Vibrio vulnificus CMCP6]
 gi|37197338|dbj|BAC93178.1| adenylylsulfate kinase [Vibrio vulnificus YJ016]
 gi|319932875|gb|ADV87739.1| adenylylsulfate kinase [Vibrio vulnificus MO6-24/O]
          Length = 207

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            +P V+   G++G GK+TV G L  ++++ G    L  GD  R  
Sbjct: 30  QKPAVLWFTGLSGAGKSTVAGALENRLAEQGFHTYLLDGDNVRHG 74


>gi|115523863|ref|YP_780774.1| arginine/ornithine transport system ATPase [Rhodopseudomonas
           palustris BisA53]
 gi|115517810|gb|ABJ05794.1| LAO/AO transport system ATPase [Rhodopseudomonas palustris BisA53]
          Length = 328

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 19/145 (13%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             EL+  +L    +      +  P         GVGK+T I  L   + +AG KV + A 
Sbjct: 42  ARELVQLLLPHTGRAMRVGITGSP---------GVGKSTTIDALGHYLVEAGHKVAVLAV 92

Query: 148 D--TFRSAA-IDQLKIWADRTSA-------DFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           D  + RS   I   K    R S            +      AA   EA    +A   DV+
Sbjct: 93  DPTSARSGGSILGDKTRMARLSVAEAAFIRPSPAAGTLGGVAAKTREAMLLCEAAGFDVV 152

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVL 222
           +++T G   + + +       + ++
Sbjct: 153 LVETVGIGQSETAVCDMTDFFLALM 177


>gi|330999157|ref|ZP_08322876.1| ATP-dependent helicase HrpA [Parasutterella excrementihominis YIT
           11859]
 gi|329575357|gb|EGG56901.1| ATP-dependent helicase HrpA [Parasutterella excrementihominis YIT
           11859]
          Length = 1389

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR------- 110
           I     QK + E      ++    + ++   +E++  +   L    +   S R       
Sbjct: 104 INAPQEQKDINESKKPAASEKKPSRALVKVGNEVLRNIPPKLELQESLPVSERADEIAEA 163

Query: 111 ---PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
                V++V G  G GKTT + K++  M   G K ++      R AA    K  ++   A
Sbjct: 164 IKNNQVVIVSGETGSGKTTQLPKIA-MMVGRGQKGLIGHTQPRRIAATSIAKRISEEMDA 222

Query: 168 DF 169
           + 
Sbjct: 223 EV 224


>gi|255318896|ref|ZP_05360122.1| cell division protease FtsH [Acinetobacter radioresistens SK82]
 gi|262378849|ref|ZP_06072006.1| cell division protein [Acinetobacter radioresistens SH164]
 gi|255304152|gb|EET83343.1| cell division protease FtsH [Acinetobacter radioresistens SK82]
 gi|262300134|gb|EEY88046.1| cell division protein [Acinetobacter radioresistens SH164]
          Length = 631

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 25/168 (14%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  + + +++  L  P  +    +  P  +L+VG  G GKT     L+K ++        
Sbjct: 164 EAKQEVVEIVDFLKDPAKFKRLGATIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 219

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           +   +                  +       S    +  +A + A      +  ID  GR
Sbjct: 220 SISGS---------------DFVEMFVGVGASRVRDMFEQAKRHAPCIIF-IDEIDAVGR 263

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                           + ++L  +D    +  + V+ AT   + L + 
Sbjct: 264 HRGSGTGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRADVLDKA 311


>gi|240136825|ref|YP_002961292.1| general secretion pathway protein E, ATPase component
           [Methylobacterium extorquens AM1]
 gi|240006789|gb|ACS38015.1| general secretion pathway protein E, ATPase component
           [Methylobacterium extorquens AM1]
          Length = 577

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 108 SHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---FRSAAIDQLKIWA 162
           ++RP+ +++V G  G GKTT +   +     +G  + +   +    +R A ++Q++   
Sbjct: 325 TNRPNGLVLVTGPTGSGKTTTL--YAALRRISGPHLKVVTVEDPVEYRMAGVNQVQAHP 381


>gi|222110547|ref|YP_002552811.1| arsenite-activated ATPase ArsA [Acidovorax ebreus TPSY]
 gi|221729991|gb|ACM32811.1| arsenite-activated ATPase ArsA [Acidovorax ebreus TPSY]
          Length = 586

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 28/159 (17%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+V+G  GVGKTT+   ++  +   G  V L+  D    AA   + +  +         +
Sbjct: 330 IMVMGKGGVGKTTIAAAIALGLVKLGKSVHLSTTD---PAAHLAVTLDGEIPGLTVGRID 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             ++      +           V+   +AG       L+      +R     +    H+ 
Sbjct: 387 PKAETQKYVDK-----------VVAAKSAGMTPAEKDLLMED---LRSPCTEEVAVFHAF 432

Query: 234 LQVLDATTGQNALRQVEMFHAVAG--TTGLIMTKMDGTA 270
             V         + Q      V     TG  +  MD T 
Sbjct: 433 SHV---------VSQARSAFVVLDTAPTGHSLLLMDATG 462


>gi|157412977|ref|YP_001483843.1| putative multidrug efflux ABC transporter [Prochlorococcus marinus
           str. MIT 9215]
 gi|157387552|gb|ABV50257.1| putative multidrug efflux ABC transporter [Prochlorococcus marinus
           str. MIT 9215]
          Length = 598

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 10/124 (8%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           ++L +     + +  +    + +  R+++ + EE++   I+  I    A+  +E    K 
Sbjct: 297 QRLFEPLRQLAERFTQIQGGLTAVERINELLDEEIQ---IKDSI---TAKHFLEN--AKD 348

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K+   +    +V+   +     + K  ++  +   HV   VG  G GKTT+I  L + 
Sbjct: 349 ANKEFKGKIEFKNVN-FFYNEGEHIIKNLSFMINPGEHV-AFVGPTGSGKTTIIRLLCRL 406

Query: 135 MSDA 138
               
Sbjct: 407 YEPQ 410


>gi|294677484|ref|YP_003578099.1| lipopolysaccharide biosynthesis family protein [Rhodobacter
           capsulatus SB 1003]
 gi|294476304|gb|ADE85692.1| lipopolysaccharide biosynthesis family protein [Rhodobacter
           capsulatus SB 1003]
          Length = 693

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 66/194 (34%), Gaps = 42/194 (21%)

Query: 106 DFSHRPHVILVVG-VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR------------- 151
           +    P VI++   V G GKTT    L+      G  V+L  GD  R             
Sbjct: 488 NVDAPPQVIMLTSSVPGEGKTTNALALAMNFVGIGKSVLLIEGDIRRNMLAEYFPQHAGR 547

Query: 152 ---------SAAIDQLKIWADRTSADFVCSE-----IGSDAAALAYEAFKQAQAKKVDVL 197
                    +A +D++ I         +  E           + A++ F     ++ D +
Sbjct: 548 KGLVSLLSGAAEVDEVVIAHPELGLSLIMGERSRVNAADLFMSDAWKGFIAQMRRRFDYI 607

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA- 256
           +IDT             +    R++ +    A  SVL      T +  + +     A   
Sbjct: 608 LIDTP---------PVLVVPDARIIAQSADAALFSVLW---DGTPRREVFEALQLFASVR 655

Query: 257 -GTTGLIMTKMDGT 269
              +GLI++++D  
Sbjct: 656 QKVSGLILSRIDTD 669


>gi|302498593|ref|XP_003011294.1| hypothetical protein ARB_02576 [Arthroderma benhamiae CBS 112371]
 gi|291174843|gb|EFE30654.1| hypothetical protein ARB_02576 [Arthroderma benhamiae CBS 112371]
          Length = 590

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA-GDTFRSAAI 155
           M L++        RP VI + GV+G GKTT++ +L + + D  L    +   D      +
Sbjct: 1   MALAQTIQSSARERPVVIGLYGVSGSGKTTLLNQLRRTLKDDFLFYEGSQVIDEVTPGGL 60

Query: 156 DQLKIWADRTSAD 168
            Q K W+      
Sbjct: 61  AQFKAWSRERQMT 73


>gi|269137757|ref|YP_003294457.1| ATP-dependent metalloprotease [Edwardsiella tarda EIB202]
 gi|267983417|gb|ACY83246.1| ATP-dependent metalloprotease [Edwardsiella tarda EIB202]
 gi|304557814|gb|ADM40478.1| Cell division protein FtsH [Edwardsiella tarda FL6-60]
          Length = 646

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  IL+VG  G GKT     L+K ++ 
Sbjct: 153 DVAGCDEAKEEVGELVEYLRDPSR-FQKLGGKIPKGILMVGPPGTGKT----LLAKAIAG 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 208 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 251

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|255037866|ref|YP_003088487.1| putative ABC transporter ATP-binding protein [Dyadobacter
           fermentans DSM 18053]
 gi|254950622|gb|ACT95322.1| ABC transporter related [Dyadobacter fermentans DSM 18053]
          Length = 555

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELI--HKMLMPLSKPF---NWDFSHRPHVIL-VVGV 119
           + EE   K    ++ +       +++I  H + M         N  F+  P+ I+ ++G 
Sbjct: 300 LSEEAREKEEKLEIFIPSGPRLGNKVIEAHNVSMGFGDRLLYENLSFALPPNGIVGIIGP 359

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           NG GKTT+   ++ ++    L      G+T + A +DQ
Sbjct: 360 NGAGKTTLFKLITGQLKP--LTGHFEVGETVQLAYVDQ 395


>gi|224050654|ref|XP_002194451.1| PREDICTED: ATP/GTP-binding protein [Taeniopygia guttata]
          Length = 425

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           H  L  + +    +    P V +VVG   VGKTTV   L       G +      D 
Sbjct: 97  HTALEQMRRQAEREDERGPRV-MVVGPTDVGKTTVCRLLLNYAVRLGRRPTFVELDV 152


>gi|190150414|ref|YP_001968939.1| chaperone ClpB [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|189915545|gb|ACE61797.1| chaperone ClpB [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
          Length = 781

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 81/207 (39%), Gaps = 17/207 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++      I  L K  A    + +EG  + +   ++ D   EE+ ++L ++  G+ V+
Sbjct: 494 EKMSELQYGKIPALEKQLAEAVKREEEGGENQLLRTKVTD---EEIAEVLSKA-TGIPVS 549

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNG 121
            K++E    K    +  +   +   +E +  +   + +        +RP    L +G  G
Sbjct: 550 -KMMEGEKEKLLRMEEVLHSRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTG 608

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKT +   L+  + D    +        R    + ++  +           +G +    
Sbjct: 609 VGKTELCKTLANFLFDDPDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY 661

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             EA ++   +   V+++D   + H +
Sbjct: 662 LTEAVRR---RPYSVVLLDEVEKAHPD 685


>gi|168466340|ref|ZP_02700210.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194443345|ref|YP_002041278.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194402008|gb|ACF62230.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195631478|gb|EDX50038.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 586

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 9/129 (6%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  LS   +   S    +I+++G  GVGKTT+   ++ +++  G  V L+  D    AA 
Sbjct: 311 LPSLSSLIDGFASQGHGLIMLMGKGGVGKTTLAAAIAVELARRGYSVHLSTSD---PAAH 367

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
               +            +  ++      +   +          +D  GR      L +  
Sbjct: 368 LTDTLDGSFDGLTVSRIDPQAETERYRQQVIAEQGKN------LDEQGRAVLEEDLRSPC 421

Query: 216 GKMIRVLKR 224
            + I V + 
Sbjct: 422 TEEIAVFQA 430


>gi|146307947|ref|YP_001188412.1| general secretory pathway protein E [Pseudomonas mendocina ymp]
 gi|145576148|gb|ABP85680.1| type II secretion system protein E (GspE) [Pseudomonas mendocina
           ymp]
          Length = 495

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 96  LMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVI 128
           +    +    +   +PH IL+V G  G GKTT +
Sbjct: 233 MRAEDRALMEETVRKPHGILLVTGPTGSGKTTTL 266


>gi|83646950|ref|YP_435385.1| chaperone activity ATPase ATP-binding subunit [Hahella chejuensis
           KCTC 2396]
 gi|83634993|gb|ABC30960.1| ATPase with chaperone activity, ATP-binding subunit [Hahella
           chejuensis KCTC 2396]
          Length = 919

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 73/203 (35%), Gaps = 23/203 (11%)

Query: 58  IGVAVAQKI--VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           +G  V+ +I  +  L  +   + +     L  +++ I      L+ P          V L
Sbjct: 571 VGKMVSDEINGILNLHEQLEKRVIGQSHALEAIAQAIRTSRAGLTDP-----RKPIGVFL 625

Query: 116 VVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           +VG +GVGKT T +  L+  +      + +     F+           +   +  + S  
Sbjct: 626 MVGPSGVGKTETALA-LADTLFGGEQNLTVINMAEFK----------EEHKVSMLLGSPP 674

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPH 231
           G           + A+ K   V+++D   + H    +          I+  +  D    +
Sbjct: 675 GYVGYGEGGVLTEAARRKPYSVILLDEMEKAHQGVQDVFYNLFDKGSIKDGEGRDIDFKN 734

Query: 232 SVLQVLDATTGQNALRQVEMFHA 254
           +V+ ++ +  G+ A+R +     
Sbjct: 735 TVI-IMTSNAGEEAIRAICAQSE 756


>gi|74316252|ref|YP_313992.1| B12-dependent methionine synthase [Thiobacillus denitrificans ATCC
           25259]
 gi|74055747|gb|AAZ96187.1| 5-methyltetrahydrofolate--homocysteine methyltransferase
           [Thiobacillus denitrificans ATCC 25259]
          Length = 1237

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 26/108 (24%)

Query: 39  RRLDDGVREELEDLLI--RSDIGVAVAQKIV---EELLTKRYAKDVSVQRVLYDVSEL-- 91
             LD  ++E +ED+L+  R+D      +++V   E +      K   +      V+E   
Sbjct: 615 ENLDPELKERVEDVLLNRRAD----ATERLVAFAEGVKGGAKEKVEDLAWRSLPVNERLT 670

Query: 92  ------IHKMLMPLSKPFNWDFSHRPHVI---LVVGVN------GVGK 124
                 I + ++  ++    +     HVI   L+ G+N      G GK
Sbjct: 671 HALVQGITQYIVEDTEAARLEAERPLHVIEGPLMAGMNVVGDLFGAGK 718


>gi|329770337|ref|ZP_08261720.1| hypothetical protein HMPREF0433_01484 [Gemella sanguinis M325]
 gi|328836695|gb|EGF86351.1| hypothetical protein HMPREF0433_01484 [Gemella sanguinis M325]
          Length = 331

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 21/120 (17%)

Query: 48  ELEDL--LIRSDIGVAVAQ-------KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           ELE +  L++ +  + +++       K V  LL K Y   VS   +       + ++   
Sbjct: 55  ELEAVISLLKYNANIDISRNKEPQSGKFVYRLLGKEYYLRVSTLPLSELYEGCVVRIFTN 114

Query: 99  LSKPFNWDFSHRPHV------------ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             +   +    + ++            IL  G  G GK+T + KL+ + +  G +V+   
Sbjct: 115 EIEDVKYSIFSKDNIFIDRLASKANGLILFSGPTGSGKSTSMYKLASRCAQLGKQVLTIE 174


>gi|291530591|emb|CBK96176.1| primosomal protein N' [Eubacterium siraeum 70/3]
          Length = 824

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 22/190 (11%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++   L     A       VL D    ++  +  L        S +P   L+ GV G GK
Sbjct: 265 EVSRSLTAGAKAVRSIDDIVLSDEQSAVYSGMSELMD------SGKPQCALLKGVTGSGK 318

Query: 125 TTVIGKLSKKMSDAGLKVMLAA-------------GDTFRSA-AIDQLKIWADRTSADFV 170
           TTV  KL  K    G   ++                D F S  A+    +   + + ++ 
Sbjct: 319 TTVFLKLIDKALKQGKTALMLVPEISLTPQMVRNFTDLFGSNVAVIHSNLSLGQRTDEYK 378

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E G     +   +   A    + +++ID  G     S          R + +      
Sbjct: 379 RIEKGEARIVIGTRSAVFAPLDNIGIIVIDEEGEHTYKSEKSPRYQA--RSIAKQRCFYH 436

Query: 231 HSVLQVLDAT 240
           ++ L +  AT
Sbjct: 437 NATLLLASAT 446


>gi|288554422|ref|YP_003426357.1| hypothetical protein BpOF4_07035 [Bacillus pseudofirmus OF4]
 gi|288545582|gb|ADC49465.1| hypothetical protein BpOF4_07035 [Bacillus pseudofirmus OF4]
          Length = 1087

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 61/172 (35%), Gaps = 26/172 (15%)

Query: 60  VAVAQKIVEELL------TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
               +++ EEL        +  A+ +S   +  +  + +   L           ++ P V
Sbjct: 145 FPTVEQVSEELTSLKEKNARAVARCISYAELHAEAKKEVAATLEETLDQLKQMTNNVP-V 203

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSD---------------AGLKVMLAAGDTFRSAAIDQL 158
           + + G  G GK+++  +L ++  +                        GD  R  +I   
Sbjct: 204 LGITGTGGAGKSSLTDELVRRFLNEFSDKTVAILSVDPTKQKTGGALLGDRIRMNSIHNS 263

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           +++    +      EI         +A   A+A   D++I++T+G    ++ 
Sbjct: 264 RVFMRSLATRNSRKEISDS----IRDAIDVAKAAGYDLVIVETSGIGQGDAE 311


>gi|254172087|ref|ZP_04878763.1| cobyrinic Acid a,c-diamide synthase [Thermococcus sp. AM4]
 gi|214033983|gb|EEB74809.1| cobyrinic Acid a,c-diamide synthase [Thermococcus sp. AM4]
          Length = 301

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 83  RVLYDVSELIHKMLMPLSKPF----NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           + L  V +   K L  +++                +++ G  GVGKTT+   L++ ++  
Sbjct: 3   KPLKSVEDERRKKLFQIAEELRERTKKQAPEEGFRVVITGKGGVGKTTMTALLARLLARD 62

Query: 139 GLKVMLAAGD 148
           G +V+    D
Sbjct: 63  GYRVLAVDED 72


>gi|167750832|ref|ZP_02422959.1| hypothetical protein EUBSIR_01815 [Eubacterium siraeum DSM 15702]
 gi|167656267|gb|EDS00397.1| hypothetical protein EUBSIR_01815 [Eubacterium siraeum DSM 15702]
          Length = 824

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 22/190 (11%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++   L     A       VL D    ++  +  L        S +P   L+ GV G GK
Sbjct: 265 EVSRSLTAGAKAVRSIDDIVLSDEQSAVYSGMSELMD------SGKPQCALLKGVTGSGK 318

Query: 125 TTVIGKLSKKMSDAGLKVMLAA-------------GDTFRSA-AIDQLKIWADRTSADFV 170
           TTV  KL  K    G   ++                D F S  A+    +   + + ++ 
Sbjct: 319 TTVFLKLIDKALKQGKTALMLVPEISLTPQMVRNFTDLFGSNVAVIHSNLSLGQRTDEYK 378

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             E G     +   +   A    + +++ID  G     S          R + +      
Sbjct: 379 RIEKGEARIVIGTRSAVFAPLDNIGIIVIDEEGEHTYKSEKSPRYQA--RSIAKQRCFYH 436

Query: 231 HSVLQVLDAT 240
           ++ L +  AT
Sbjct: 437 NATLLLASAT 446


>gi|148555498|ref|YP_001263080.1| general secretory pathway protein E [Sphingomonas wittichii RW1]
 gi|148500688|gb|ABQ68942.1| general secretory pathway protein E [Sphingomonas wittichii RW1]
          Length = 486

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 96  LMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT--FRS 152
           L    +        RPH IL+V G  G GKTT +      ++D    +M    D   +  
Sbjct: 223 LSERDRDVFLGLLDRPHGILLVTGPTGSGKTTTLYTALTHLNDRKRNIMTVE-DPIEYEL 281

Query: 153 AAIDQLKIWAD 163
           A + Q ++ A 
Sbjct: 282 AGVAQTQVNAR 292


>gi|148257492|ref|YP_001242077.1| putative ABC transporter ATP-binding protein [Bradyrhizobium sp.
           BTAi1]
 gi|146409665|gb|ABQ38171.1| putative ABC transporter, ATP-binding protein with duplicated
           ATPase domains [Bradyrhizobium sp. BTAi1]
          Length = 549

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 11/70 (15%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPF-------NWDFSHRPHVIL-V 116
           EELL K   K     +++  V+E +   +     L+K F       N  F   P  I+ V
Sbjct: 289 EELLKKASEKQTQTAQIIIPVAERLGNNVIDFEGLTKSFGDRLLIDNLTFKLPPGGIVGV 348

Query: 117 VGVNGVGKTT 126
           +G NG GKTT
Sbjct: 349 IGPNGAGKTT 358


>gi|297155136|gb|ADI04848.1| putative ABC transporter protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 644

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 24/152 (15%)

Query: 113 VILVVGVNGVGKTTVIGKLS-KKMSDAGLKVM----LAAGD----TFRSAAIDQ-LKIWA 162
           V+ +VG NG GK+T++  L+   + D+G  +     +A  D      R A ++Q  K W 
Sbjct: 422 VVALVGENGSGKSTLVKLLAGLHLPDSGRILWDGTDIAEADREQLFSRIAMVNQDFKRWP 481

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN-NSILMAGI------ 215
               A+       S   A A +  + A     D ++    G  H  +++L          
Sbjct: 482 FTAKANVAIGSPQSPIRAEALD--RAAAHAGADDIV---TGLPHGWDTLLAREFRGGHQL 536

Query: 216 --GKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
             G+  R+      +    VL V + T+  +A
Sbjct: 537 SGGQWQRLGIARARYRTAPVLLVDEPTSALDA 568


>gi|296328357|ref|ZP_06870884.1| nucleotide-binding protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154536|gb|EFG95326.1| nucleotide-binding protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 257

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 96  LMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++    P   D  +  +VI ++ G  GVGK+TV   L+K++   G  V +   D
Sbjct: 1   MIQKEAPKVKDDKNIKNVIAVMSGKGGVGKSTVTTLLAKELRKKGYSVGVMDAD 54


>gi|254526662|ref|ZP_05138714.1| ATPase [Prochlorococcus marinus str. MIT 9202]
 gi|221538086|gb|EEE40539.1| ATPase [Prochlorococcus marinus str. MIT 9202]
          Length = 598

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 10/124 (8%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           ++L +     + +  +    + +  R+++ + EE++   I+  I    A+  +E    K 
Sbjct: 297 QRLFEPLRQLAERFTQIQGGLTAVERINELLDEEIQ---IKDSI---TAKHFLEN--DKN 348

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             K    +    +V+   +     + K  ++  +   HV   VG  G GKTT+I  L + 
Sbjct: 349 ANKKFKGKIEFKNVN-FFYNEGEHIIKNLSFMINPGEHV-AFVGPTGSGKTTIIRLLCRL 406

Query: 135 MSDA 138
               
Sbjct: 407 YEPQ 410


>gi|146283637|ref|YP_001173790.1| cell division protein FtsH [Pseudomonas stutzeri A1501]
 gi|145571842|gb|ABP80948.1| cell division protein FtsH [Pseudomonas stutzeri A1501]
          Length = 593

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E +H+++  L  P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 117 EAKEEVHELVEFLRDPGKFQRLGGRIPRGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 172

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 173 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKHAPCIIF-IDEIDAVGR 216

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 217 HRGAGLGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLD 262


>gi|332139846|ref|YP_004425584.1| type II secretion system protein E:GAF domain protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|332139859|ref|YP_004425597.1| type II secretion system protein E:GAF domain protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327549868|gb|AEA96586.1| type II secretion system protein E:GAF domain protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327549881|gb|AEA96599.1| type II secretion system protein E:GAF domain protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 738

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 95  MLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVI 128
            L P ++    D   +PH IL VVG  G GKTT +
Sbjct: 465 NLAPSNRARLEDMIKKPHGILLVVGPTGSGKTTTL 499


>gi|87124935|ref|ZP_01080782.1| MRP protein-like [Synechococcus sp. RS9917]
 gi|86167255|gb|EAQ68515.1| MRP protein-like [Synechococcus sp. RS9917]
          Length = 366

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 64/205 (31%), Gaps = 27/205 (13%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G  GVGK+TV   L+  ++  G +V L   D +   A   L +           SE    
Sbjct: 120 GKGGVGKSTVAVNLACALARQGHRVGLLDADIYGPNAPTMLGVAEQTPEVRGSGSEQRMT 179

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV- 236
                  A           L+ID    +     ++ G   +IR            VL V 
Sbjct: 180 PIESCGVAMVSMG------LLIDPDQPVIWRGPMLNG---IIRQFLYQVSWGERDVLVVD 230

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMD-----GTARGGGLIPIVVTHKIPVYFLGV 291
           L   TG   L             G+I+           AR G  + +    +IPV  LGV
Sbjct: 231 LPPGTGDAQLSLA----QAVPMAGVIIVTTPQQVALQDARRG--LAMFRQMQIPV--LGV 282

Query: 292 GEGINDLEPFVAKDFSAV--ITGCL 314
            E ++   P           + G  
Sbjct: 283 VENMSAFIP--PDQPERRYPLFGEG 305


>gi|120597893|ref|YP_962467.1| ATP-dependent metalloprotease FtsH [Shewanella sp. W3-18-1]
 gi|120557986|gb|ABM23913.1| membrane protease FtsH catalytic subunit [Shewanella sp. W3-18-1]
          Length = 657

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   K    DV+      +  + +   L   +K F       P  +L+VG  G GK
Sbjct: 150 KLMSEDQIKTTFADVAGCDEAKEEVKELVDYLRDPTK-FQKLGGRIPTGVLMVGPPGTGK 208

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 209 T----LLAKAIAGESKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 249

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 250 AKKSAPCIIF-IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATN 308

Query: 242 GQNALRQV 249
             + L   
Sbjct: 309 RPDVLDSA 316


>gi|328953520|ref|YP_004370854.1| Cobyrinic acid ac-diamide synthase [Desulfobacca acetoxidans DSM
           11109]
 gi|328453844|gb|AEB09673.1| Cobyrinic acid ac-diamide synthase [Desulfobacca acetoxidans DSM
           11109]
          Length = 255

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 18/35 (51%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I V G  GVGKTT+   L K   D G KV+    D
Sbjct: 3   IAVSGKGGVGKTTLAALLIKYFRDQGKKVLAIDAD 37


>gi|239996919|ref|ZP_04717443.1| ATP-dependent metalloprotease FtsH [Alteromonas macleodii ATCC
           27126]
          Length = 503

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 52/169 (30%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DVSEL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 17  DEAKEDVSELVDFLRDP--SKFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKV 70

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 71  PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 114

Query: 202 AGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR     +          + ++L  +D    H  + V+ AT   + L 
Sbjct: 115 VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGHEGIIVIAATNRPDVLD 163


>gi|237739348|ref|ZP_04569829.1| MRP-family nucleotide-binding protein [Fusobacterium sp. 2_1_31]
 gi|229422956|gb|EEO38003.1| MRP-family nucleotide-binding protein [Fusobacterium sp. 2_1_31]
          Length = 257

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 96  LMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++    P   D  +  +VI ++ G  GVGK+TV   L+K++   G  V +   D
Sbjct: 1   MIQKEAPKVKDDKNIKNVIAVMSGKGGVGKSTVTTLLAKELRKKGYSVGVMDAD 54


>gi|116328082|ref|YP_797802.1| ATP-dependent Clp protease ATP-binding subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116120826|gb|ABJ78869.1| ATP-dependent clp protease ATP-binding subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 743

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVRE--ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           A   ++L+EG    ++ R ++D V +  ++  + +++D    + + + EEL TK Y +D 
Sbjct: 400 AGARVRLREGGKKTVTVREIEDLVSKIAKVPSVTVKADDREKL-KNLDEELKTKIYGQDA 458

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           ++++++  +   I  +          +        L  G  GVGKT +  KL+       
Sbjct: 459 AIEQLVQSIRLSISGL---------SELGKPVGCFLFAGPTGVGKTELTRKLA------- 502

Query: 140 LKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
               +   +  R    D  +     T +  + S  G        +           VL++
Sbjct: 503 ---EILGVELVR---FDMSEYMEKHTVSRLIGSPPGYVGFEQGGQLTDAIYRNPHCVLLL 556

Query: 200 DTAGRLHNN--SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           D   + H +  +IL+  +               H V+ V+   TG
Sbjct: 557 DEIEKAHEDIYNILLQIMDHATLTDNNGRKSDFHQVILVMTTNTG 601


>gi|110005505|emb|CAK99827.1| putative atpase with chaperone activity, clp protease subunit
           protein [Spiroplasma citri]
          Length = 606

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV-VGVNGVGK 124
           I +EL  +   +D ++++    V  +++K    LS         +P   L  VG  GVGK
Sbjct: 296 IEKELKKRVIGQDHAIEK----VKNVVYKAFTGLSGVQYSSNRTKPKGTLFFVGPTGVGK 351

Query: 125 TTVIGK-LSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            T + K L+K +       +      +   A DQ
Sbjct: 352 -TELAKALAKFLFGDEKNCIRFDMSEYNQEASDQ 384


>gi|152989674|ref|YP_001347406.1| general secretion pathway protein E [Pseudomonas aeruginosa PA7]
 gi|150964832|gb|ABR86857.1| general secretory pathway protein E [Pseudomonas aeruginosa PA7]
          Length = 502

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 96  LMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVI 128
           +    +    +   +PH IL+V G  G GKTT +
Sbjct: 240 MSERDRKLMDETVRKPHGILLVTGPTGSGKTTTL 273


>gi|83648149|ref|YP_436584.1| chaperone activity ATPase ATP-binding subunit [Hahella chejuensis
           KCTC 2396]
 gi|83636192|gb|ABC32159.1| ATPase with chaperone activity, ATP-binding subunit [Hahella
           chejuensis KCTC 2396]
          Length = 1101

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 13/188 (6%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A K+ E    +   +  +V+ ++  +   +   L P  KP           +L VG  GV
Sbjct: 453 ADKVREHFRRRIVGQTQAVEALVRAIIT-VKAGLAPRGKPIAS--------LLFVGPTGV 503

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKT +   L++     G +  L   D    +    +        A  V        + L 
Sbjct: 504 GKTEMAKTLAQF--MFGDEKRLLRFDMSEYSDPYSVTRLTATGEASLVTKVRQQPFSVLL 561

Query: 183 YEAFKQAQAKKVDVLI-IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV-LDAT 240
           ++  ++A     D+L+ +   GRL ++    A     + ++             V     
Sbjct: 562 FDEIEKADPAFYDLLLQVLGEGRLTDDHGESANFCSALIIMTSNLGAQQFMQNSVGFSTE 621

Query: 241 TGQNALRQ 248
              +A  Q
Sbjct: 622 DKTDAAAQ 629


>gi|150392222|ref|YP_001322271.1| LAO/AO transport system ATPase [Alkaliphilus metalliredigens QYMF]
 gi|149952084|gb|ABR50612.1| LAO/AO transport system ATPase [Alkaliphilus metalliredigens QYMF]
          Length = 313

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 74/230 (32%), Gaps = 49/230 (21%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           EL++ L++ D      ++ V  L+T    ++     +L  +                +  
Sbjct: 2   ELDERLLQGD------KRAVARLITMAENEEPEATAILSRL----------------YPH 39

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADR 164
           + +  +I + G  G GK+T+  KL K +      V + A D    F   AI   +I    
Sbjct: 40  TGKARIIGITGPPGAGKSTLTDKLVKILRKKNKTVGIIAVDPTSPFTGGAILGDRIRMSD 99

Query: 165 T----SADFVCSEIGSDAAALAYE---AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
                               ++     A K   A  VD +II+T G   +          
Sbjct: 100 LYTDPGVFIRSMGTRGHLGGISRATQSAIKILDAYGVDFIIIETVGVGQSEVD------- 152

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
                         +VL V+    G + ++ ++      G     + K D
Sbjct: 153 --------IVKTADTVLMVMVPGLG-DDIQAIKAGIMEIG-DVFAINKAD 192


>gi|324546787|gb|ADY49717.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase [Ascaris suum]
          Length = 119

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            K+ M   +    D  H P+VI++VG+   GKT +  KL + +   G    +     +R
Sbjct: 19  RKVAMRFEEGPTTDPVHLPNVIVMVGLPARGKTYISRKLCRYLKWIGFSTNVFNVGDYR 77


>gi|324514882|gb|ADY46021.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase [Ascaris suum]
          Length = 469

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            K+ M   +    D  H P+VI++VG+   GKT +  KL + +   G    +     +R
Sbjct: 19  RKVAMRFEEGPTTDPVHLPNVIVMVGLPARGKTYISRKLCRYLKWIGFSTNVFNVGDYR 77


>gi|167839670|ref|ZP_02466354.1| ParA family protein, putative [Burkholderia thailandensis MSMB43]
          Length = 217

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 114 ILVVG--VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           IL VG    GVGK+T   +L+  ++  G +V L  GD+ R++           T    + 
Sbjct: 2   ILAVGNPKGGVGKSTTAVQLAIGLALDGARVWLVDGDSQRTS--LSAITARAHTGRPLIA 59

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           +   +D  +L  +  +Q    + D ++ID  GR 
Sbjct: 60  ASAYADGPSLRAQVLQQC--VQFDQVVIDVGGRD 91


>gi|157374409|ref|YP_001473009.1| putative ABC transporter ATP-binding protein [Shewanella sediminis
           HAW-EB3]
 gi|157316783|gb|ABV35881.1| ABC transporter-related protein [Shewanella sediminis HAW-EB3]
          Length = 555

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 23/127 (18%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I V+G+NG GK+T++              ++A  DT     I+            ++  E
Sbjct: 35  IGVLGLNGSGKSTLL-------------RIMAGLDT----EIEGEARPMQDLKIGYLPQE 77

Query: 174 IGSDAAALAYEAFKQAQAK------KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              D      EA ++A ++      ++D +    A    +   L    G++  ++   D 
Sbjct: 78  PKLDPTQTVREAIEEAVSEAKNALTRLDEVYALYAEPDADFDALAKEQGQLEAIIHSQDA 137

Query: 228 HAPHSVL 234
           H   +VL
Sbjct: 138 HNLDNVL 144


>gi|156365573|ref|XP_001626719.1| predicted protein [Nematostella vectensis]
 gi|156213606|gb|EDO34619.1| predicted protein [Nematostella vectensis]
          Length = 481

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
            +   F + P VI++VG+   GKT +  KL + ++  G++  +     +R  A+
Sbjct: 64  EYTPRFVNVPTVIVLVGLPARGKTYMAKKLGRYLNWIGIQCKVFNVGEYRRKAV 117


>gi|156841725|ref|XP_001644234.1| hypothetical protein Kpol_1051p25 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156114872|gb|EDO16376.1| hypothetical protein Kpol_1051p25 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1968

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 4/113 (3%)

Query: 1    MSNQKVASESLSWIRKLTKGFASTSLKLKEG---ITDIISSRRLDDGVREELEDLLIRSD 57
            +   +   + LS +++  + F  ++  L E    + +  +SR +D+     L D LI   
Sbjct: 1175 IEKSQTTIQKLSEVQRELETFKKSNHNLTEKYEDLKNNFNSRSVDEEKLSSLSDALIEQK 1234

Query: 58   I-GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
                ++AQK+++        K+   +  +  VSE  +  LM   +  N     
Sbjct: 1235 AKNESLAQKLLQVTNENLKIKEQKDRDQVVIVSETANIELMGKIEELNEKVVQ 1287


>gi|146293935|ref|YP_001184359.1| ATP-dependent metalloprotease FtsH [Shewanella putrefaciens CN-32]
 gi|145565625|gb|ABP76560.1| membrane protease FtsH catalytic subunit [Shewanella putrefaciens
           CN-32]
          Length = 657

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   K    DV+      +  + +   L   +K F       P  +L+VG  G GK
Sbjct: 150 KLMSEDQIKTTFADVAGCDEAKEEVKELVDYLRDPTK-FQKLGGRIPTGVLMVGPPGTGK 208

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 209 T----LLAKAIAGESKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 249

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 250 AKKSAPCIIF-IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATN 308

Query: 242 GQNALRQV 249
             + L   
Sbjct: 309 RPDVLDSA 316


>gi|159899953|ref|YP_001546200.1| carbohydrate kinase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892992|gb|ABX06072.1| carbohydrate kinase, thermoresistant glucokinase family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 166

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 48/141 (34%), Gaps = 23/141 (16%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VI+V+GV+GVGKTTV   L+   +           D     A  Q        +   +  
Sbjct: 2   VIVVMGVSGVGKTTVGQLLATAQAWQ-----FIDADDLHPEANRQ-----KMANGQPLTD 51

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                  AL  E      A+   +++  +A        L A     + V +++     H 
Sbjct: 52  ADRWPWLALVREQISAVLAQNCSLVLACSA--------LRAEYRDYLAVDQQV-----HF 98

Query: 233 VLQVLDATTGQNALRQVEMFH 253
           V  V D    Q  L+Q     
Sbjct: 99  VHLVGDPALIQARLQQRSNHF 119


>gi|113953211|ref|YP_730417.1| ABC transporter permease/ATP-binding protein [Synechococcus sp.
           CC9311]
 gi|113880562|gb|ABI45520.1| ABC transporter, permease/ATP-binding protein [Synechococcus sp.
           CC9311]
          Length = 568

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 16/184 (8%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ + FN        V+ +VG +G GKTT+   L +       +++    D  + +A D 
Sbjct: 342 PVLQDFNLSIKAG-QVVALVGPSGAGKTTLFSLLLRFNRVNHGQLLCDDKDLSQVSARD- 399

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+          V       +  +A EA +  +          T  +LH  + L      
Sbjct: 400 LRQ-----QVALVPQRSSVFSGTIA-EAIRFGRQA--------TQEQLHQAAKLANAHDF 445

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           +IR+    +         V      + A+ +  + +          + +D  A     + 
Sbjct: 446 IIRLPDGYNTRLQERGTNVSGGQLQRIAIARAVLGNPAVMLLDEATSALDAEAEAAVQLG 505

Query: 278 IVVT 281
           +   
Sbjct: 506 LKQA 509


>gi|56552653|ref|YP_163492.1| thermoresistant glucokinase family carbohydrate kinase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|260753696|ref|YP_003226589.1| carbohydrate kinase, thermoresistant glucokinase family [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|56544227|gb|AAV90381.1| carbohydrate kinase, thermoresistant glucokinase family [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|258553059|gb|ACV76005.1| carbohydrate kinase, thermoresistant glucokinase family [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 165

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I+V+GV+G GK+TV   L+K +            D F   A          ++   +  
Sbjct: 2   IIVVMGVSGCGKSTVGADLAKHL-----HCDFQDADDFHPQANK-----DKMSNGIPLTD 51

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLI 198
           E          +   + +A   DV+ 
Sbjct: 52  EDRWPWLRAIRDYMDKEKAAGHDVVF 77


>gi|15612883|ref|NP_241186.1| uridine kinase [Bacillus halodurans C-125]
 gi|10172933|dbj|BAB04039.1| BH0320 [Bacillus halodurans C-125]
          Length = 205

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 27/45 (60%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
             + RP ++ + G+ G GKTT + KLS+++ +   +V++   D +
Sbjct: 14  GPNDRPFIVGIDGLGGAGKTTFVKKLSRELKNWHHEVIVLPLDDY 58


>gi|88807745|ref|ZP_01123257.1| putative multidrug efflux ABC transporter [Synechococcus sp. WH
           7805]
 gi|88788959|gb|EAR20114.1| putative multidrug efflux ABC transporter [Synechococcus sp. WH
           7805]
          Length = 609

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 20/163 (12%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVRE--ELEDLLIRSDIGVA---VAQ--KIV 67
           ++L       + +  +    + +  R+ + + E  E++   I +D GV      +  +++
Sbjct: 303 QRLFDPLRQMAERFTQIQGGLTAVERIGELLEEPLEIQKQPIAAD-GVQQSITTKPLQLI 361

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +    +    +V       +          P+ +  ++  +   HV  +VG  G GKTTV
Sbjct: 362 QTPRGEVVFDNVHFAYRPDE----------PILEDLSFRIAPGEHV-ALVGPTGSGKTTV 410

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           I  L +       +++L   D  R+ ++  L+        D  
Sbjct: 411 IRLLCRLYEPQRGRILLDGQDI-RTLSLSDLRHQLGVVLQDTF 452


>gi|302342628|ref|YP_003807157.1| cobalamin synthesis protein P47K [Desulfarculus baarsii DSM 2075]
 gi|301639241|gb|ADK84563.1| cobalamin synthesis protein P47K [Desulfarculus baarsii DSM 2075]
          Length = 235

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 20/156 (12%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+V G   VGKT V   +++     G +V+ A  DT  SA  ++ +      S   +   
Sbjct: 4   IIVAGPPSVGKTAVTTHVARLWRAKGARVLAAKFDTQSSADPERYRQNLGAPSLGGLSGY 63

Query: 174 IGSDAAALAY--EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +  D   ++   E  +    ++ DVL ++TAG       L       +  +  +      
Sbjct: 64  LCPDHYFISNLEEVVEWGLGQRADVLFVETAG-------LCLRCAPHVEGVPAV------ 110

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
               V+DA  G +A  +V    ++A    +++TK D
Sbjct: 111 ---TVIDALGGLDAPVKVGPMLSLADV--VVLTKGD 141


>gi|294783660|ref|ZP_06748984.1| MRP-family nucleotide-binding protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480538|gb|EFG28315.1| MRP-family nucleotide-binding protein [Fusobacterium sp. 1_1_41FAA]
          Length = 257

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 96  LMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++    P   D  +  +VI ++ G  GVGK+TV   L+K++   G  V +   D
Sbjct: 1   MIQKEAPKVKDDKNIKNVIAVMSGKGGVGKSTVTTLLAKELRKKGYSVGVMDAD 54


>gi|261415985|ref|YP_003249668.1| capsular exopolysaccharide family [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372441|gb|ACX75186.1| capsular exopolysaccharide family [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326167|gb|ADL25368.1| putative tyrosine-protein kinase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 706

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 79/229 (34%), Gaps = 41/229 (17%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV--GVNGVGKTTV 127
           +L ++   DV+   V+ +  +   + +  L     +        IL+V   V GVGK+ V
Sbjct: 475 MLDRKTQNDVTKPCVVTNPDDPFAEGVRALRTALEFSVFCDGKKILMVSGLVQGVGKSFV 534

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA----- 182
              L+   + +G KV+L   D  R      L   + +   + +  E  SD   +      
Sbjct: 535 STNLAASFAMSGKKVLLVDMDLRR----GHLFKHSQKGLCEMLEKEDYSDEYVVKISDNF 590

Query: 183 --------------------YEAFKQAQAKKVDVLIIDTAGRLH-NNSILMAGIGKMIRV 221
                               + AF  A   K D++++DT      ++++L+      +  
Sbjct: 591 YVLGSGARVVNPGGLLNSSRFSAFLDAFRDKYDLIVLDTPPVFQCSDALLVEKHADYLLC 650

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           + +   H   S+         Q+AL   +           +  K +  A
Sbjct: 651 VLKHAAHTIESI---------QDALNTFDRSTETPLQKAFVFNKCERHA 690


>gi|229825195|ref|ZP_04451264.1| hypothetical protein GCWU000182_00547 [Abiotrophia defectiva ATCC
           49176]
 gi|229790567|gb|EEP26681.1| hypothetical protein GCWU000182_00547 [Abiotrophia defectiva ATCC
           49176]
          Length = 310

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTS-----AD 168
           L+ G  G GKTT I K +K + D GLK+ +   D     AI+  L +  D          
Sbjct: 6   LITGFLGSGKTTFIKKYAKYLIDRGLKIGILENDY---GAINIDLMLLGDLIGDNCELEM 62

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            +                        D ++++ +G      
Sbjct: 63  IIGGGDLETHKRRFRTKLIAMAMSGYDRVLVEPSGIFEPEE 103


>gi|206890791|ref|YP_002249752.1| Uma3 [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742729|gb|ACI21786.1| Uma3 [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 517

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 11/111 (9%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-----SAAID-QLKI 160
              +P V +V G++G GK+T    L++ +            D  R      A  +   + 
Sbjct: 331 AEGKPKVFVVFGLSGTGKST----LARAL-IKETLAEWIPSDIVRKSLVGIAPTEHHYEP 385

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
           +     +     +  +    +A EA  + +   +D    D   R      L
Sbjct: 386 FEKGIYSREYTEKTYTKMIEIAKEAVLKGRDVILDATFKDRVYREKVAQEL 436


>gi|182415115|ref|YP_001820181.1| LAO/AO transport system ATPase [Opitutus terrae PB90-1]
 gi|177842329|gb|ACB76581.1| LAO/AO transport system ATPase [Opitutus terrae PB90-1]
          Length = 374

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 65/202 (32%), Gaps = 36/202 (17%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +         +L+ ++L    K      +  P         G GK+T I      ++ 
Sbjct: 79  ESNAPAHQEQAQQLLARLLPHTGKSKRIGITGIP---------GAGKSTFIEAFGTYLTG 129

Query: 138 AGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSEIGSDAAALAY---EAFK 187
            G ++ + A D   T    +I      ++  + +  A    S  G     +A    EA  
Sbjct: 130 QGHEIAVLAIDPSSTLTGGSILGDKVRMEQLSRQAGAFIRPSPSGGSLGGVARKTREAIL 189

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A   DV++++T G   N   +                 +      VL      + ++
Sbjct: 190 VCEAAGFDVVLVETVGVGQNEVTVR----------------SMVDFFLVLMIAGAGDEMQ 233

Query: 248 QVEMFHAVAGTTGLIMTKMDGT 269
            ++          L++ K DG 
Sbjct: 234 GIKKGVIELA-DALVINKADGD 254


>gi|321252334|ref|XP_003192369.1| actin cross-linking [Cryptococcus gattii WM276]
 gi|317458837|gb|ADV20582.1| Actin cross-linking, putative [Cryptococcus gattii WM276]
          Length = 1321

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT-VIGKLSKKMSDAGLKVMLAAGD 148
           +I   L+          + RP ++ + G  G GKTT     +S   +   LK+ + + D
Sbjct: 491 IIADYLVDQVTKHKSMSNKRPLMVGLQGPQGCGKTTLTTALVSYLKNGKQLKLAILSID 549


>gi|300113152|ref|YP_003759727.1| lipid A ABC exporter family protein [Nitrosococcus watsonii C-113]
 gi|299539089|gb|ADJ27406.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
           [Nitrosococcus watsonii C-113]
          Length = 597

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 15/167 (8%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSA 153
           N D   +P+  I +VG +G GK+T++G L++        + +   D           + A
Sbjct: 362 NIDLEIKPYQTIALVGHSGSGKSTLVGLLARFYETTAGHIFIDEMDIQTLRLTELRRQIA 421

Query: 154 AIDQLKIWADRTSADF--VCSEIGSDAAALAYEAFKQAQAKKVDVL--IIDTAGRLHNNS 209
            + Q  I  + T A      S   +    +   A      + +D L   +DT        
Sbjct: 422 LVSQQIILFNDTIAHNIAYGSYQQTSKQDIIRAAEAAHAMEFIDRLPNGLDTM-IGEKGV 480

Query: 210 ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +L  G  + + + + L   AP  +L    A+    A R ++      
Sbjct: 481 LLSGGQRQRLAIARALLKDAPILILDEATASLDTEAERHIQAALETL 527


>gi|289641870|ref|ZP_06474026.1| CO dehydrogenase maturation factor-like protein [Frankia symbiont
           of Datisca glomerata]
 gi|289508279|gb|EFD29222.1| CO dehydrogenase maturation factor-like protein [Frankia symbiont
           of Datisca glomerata]
          Length = 345

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQL 158
           I  VG  G GKTT+     ++++  G  V+    D      A   L
Sbjct: 3   IAFVGKGGSGKTTLSALFCRRLAAHGHPVLAIDADINQHLGAALGL 48


>gi|257876503|ref|ZP_05656156.1| ABC transporter [Enterococcus casseliflavus EC20]
 gi|257810669|gb|EEV39489.1| ABC transporter [Enterococcus casseliflavus EC20]
          Length = 594

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 21/177 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAIDQLKI 160
           N +FS +P   + +VG  G GKTT+I  L +     G K++L   D  +F + A+   K 
Sbjct: 374 NVEFSVKPKQTVAIVGPTGAGKTTMINLLMRFYPLNGGKILLDDQDMMSFSAPAVR--KK 431

Query: 161 WADRTSADFVCSEI------GSDAAALAYEAFKQAQAKKVDVLI------IDTAGRLHNN 208
           +       ++            +  A   +    A+A + D  +       DT   + + 
Sbjct: 432 FGMVLQDTWLFQGTIAENIAYGNPDATREDILAAAKAAQCDHFVRTLPNGYDTV--IGSE 489

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIM 263
           S L  G  +++ + + +       +L    ++      + ++        G T  I+
Sbjct: 490 SELSQGQQQLLTIARAILADPTILILDEATSSVDTRTEQMIQTAMDRLTQGRTSFII 546


>gi|219117033|ref|XP_002179311.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409202|gb|EEC49134.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 368

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 97  MPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
               +  N   S+  HVILV+ G  GVGK+TV  +LS  +S+ G  V L   D    +A
Sbjct: 58  EAEVEALNRSLSNVSHVILVLSGKGGVGKSTVAAQLSHTLSNQGYAVGLLDVDLCGPSA 116


>gi|184156142|ref|YP_001844482.1| guanylate kinase [Lactobacillus fermentum IFO 3956]
 gi|227515324|ref|ZP_03945373.1| possible guanylate kinase [Lactobacillus fermentum ATCC 14931]
 gi|183227486|dbj|BAG28002.1| guanylate kinase [Lactobacillus fermentum IFO 3956]
 gi|227086306|gb|EEI21618.1| possible guanylate kinase [Lactobacillus fermentum ATCC 14931]
          Length = 194

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 12/115 (10%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTSAD- 168
            V ++ G  G GKTTV    +K + D      +    T   R   +D +  + +  ++  
Sbjct: 7   PVFVITGAAGSGKTTV----AKYLKDTYQMAKVITHTTRAPRPGEVDGVDYYFESPTSIK 62

Query: 169 ----FVCSEIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKM 218
                   E        +YE  +   AK   DV+++DTAG L  +  L      +
Sbjct: 63  DRHLLERVEYDGHLYGSSYEGLEAGWAKHPADVIVLDTAGALTYHQALGDQAVVI 117


>gi|153870953|ref|ZP_02000243.1| ATP-dependent metalloprotease FtsH [Beggiatoa sp. PS]
 gi|152072583|gb|EDN69759.1| ATP-dependent metalloprotease FtsH [Beggiatoa sp. PS]
          Length = 638

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++EE   K    DV+      +    + + L   +K  N      P  +L+VG  G GK
Sbjct: 142 RLIEEDQIKITFADVAGVDEAKEEVSELVEFLRDPAKFQNLG-GKIPRGVLMVGSPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 201 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIVF-IDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFEGNEGVIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|160903065|ref|YP_001568646.1| ATPase [Petrotoga mobilis SJ95]
 gi|160360709|gb|ABX32323.1| ATPase AAA-2 domain protein [Petrotoga mobilis SJ95]
          Length = 826

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 33/153 (21%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDD---------GVREELEDLL-----IRSDIGV 60
            K+ +       KL+E I  +    + ++          +++ELE        ++S+I  
Sbjct: 420 EKIRE-LEKKLSKLEEEINKLTLEEKYEEASKKKAEYFDLQKELEQAQKAAKRVQSEISN 478

Query: 61  AVAQKIVEELLTKRYAKDVS-----VQRVLYDVSELIHKMLMPLSKPFNW---------- 105
            V + I+  L+ +     V+      ++ L ++   IHK L+   +  N           
Sbjct: 479 VVDEDIIASLVQEWTGIPVTRMVEDEKKKLANLENEIHKRLVDQDEAVNTVADHIKKARA 538

Query: 106 ---DFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              D        L +G  GVGKT +   L++ +
Sbjct: 539 GLKDPKKPVGSFLFLGPTGVGKTELAKTLAEIL 571


>gi|126695925|ref|YP_001090811.1| putative multidrug efflux ABC transporter [Prochlorococcus marinus
           str. MIT 9301]
 gi|126542968|gb|ABO17210.1| putative multidrug efflux ABC transporter [Prochlorococcus marinus
           str. MIT 9301]
          Length = 597

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 22/130 (16%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           ++L +     + +  +    + +  R+++ + EE+               +I + +  + 
Sbjct: 296 QRLFEPLRQLAERFTQIQGGLTAVERINELLDEEI---------------QIQDSISARN 340

Query: 75  YAKDVSVQRVLYDVSELIH------KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +AKD       +             K    + K  ++  +   HV   VG  G GKTT+I
Sbjct: 341 FAKDAQTANKKFTGKIEFKNVNFSYKEGEHILKNLSFLINPGEHV-AFVGPTGSGKTTII 399

Query: 129 GKLSKKMSDA 138
             L +     
Sbjct: 400 RLLCRLYEPQ 409


>gi|115486649|ref|NP_001068468.1| Os11g0684200 [Oryza sativa Japonica Group]
 gi|113645690|dbj|BAF28831.1| Os11g0684200 [Oryza sativa Japonica Group]
 gi|125578029|gb|EAZ19251.1| hypothetical protein OsJ_34788 [Oryza sativa Japonica Group]
          Length = 950

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 11/145 (7%)

Query: 60  VAVAQKIVEELLT-KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           V +     EE+   +R   +V     +    E +  +L  +          +  V  +VG
Sbjct: 94  VKIRSSFSEEIQKLRRRLSEVRHLVGIRQPMEELLSLLDEVEGE-----PKQLRVTSIVG 148

Query: 119 VNGVGKTTVIGKLSK---KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            +G+GKTT + K         D          D       + +K             +  
Sbjct: 149 FSGLGKTT-LAKAVYDSPHAKDKFCLRAWITADGS-PETSNWMKEILRGVLQQVRPGDAM 206

Query: 176 SDAAALAYEAFKQAQAKKVDVLIID 200
                    + K+    K  ++IID
Sbjct: 207 DVDGQHLEASLKEYLKDKRYLIIID 231


>gi|121594853|ref|YP_986749.1| arsenite-activated ATPase subunit ArsA [Acidovorax sp. JS42]
 gi|120606933|gb|ABM42673.1| arsenite efflux ATP-binding protein ArsA [Acidovorax sp. JS42]
          Length = 586

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 28/159 (17%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+V+G  GVGKTT+   ++  +   G  V L+  D    AA   + +  +         +
Sbjct: 330 IMVMGKGGVGKTTIAAAIALGLVKLGKSVHLSTTD---PAAHLAVTLDGEIPGLTVGRID 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             ++      +           V+   +AG       L+      +R     +    H+ 
Sbjct: 387 PKAETQKYVDK-----------VVAAKSAGMTPAEKDLLMED---LRSPCTEEVAVFHAF 432

Query: 234 LQVLDATTGQNALRQVEMFHAVAG--TTGLIMTKMDGTA 270
             V         + Q      V     TG  +  MD T 
Sbjct: 433 SHV---------VSQARSAFVVLDTAPTGHSLLLMDATG 462


>gi|270208546|ref|YP_003329317.1| sulfate adenylate transferase subunit 1 [Sinorhizobium meliloti]
 gi|76880820|gb|ABA55990.1| sulfate adenylate transferase subunit 1 [Sinorhizobium meliloti]
          Length = 636

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             P ++   G++G GK+TV   L K+++  G    +  GD  R  
Sbjct: 461 QTPQIVWFTGLSGSGKSTVANLLEKRLTAEGKHAYILDGDNVRHG 505


>gi|21321589|gb|AAM47268.1|AF509533_1 putative NBS-LRR resistance protein [Aegilops tauschii]
          Length = 822

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 13/127 (10%)

Query: 4   QKVASESLSWIRK----LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           QK+    + +I +    +TKG      K+   I DI +  +    V E  E   I S + 
Sbjct: 93  QKMPHSFMDFIHRSMDMMTKG--KIRHKIGMDIKDIKNRIK---EVSERRERYKIDSVVV 147

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
                   + L      K  +      + S  I KML    +        +P +I +VG 
Sbjct: 148 PKPTGTSTDTLRQLALFKKATELIGTEEKSLEIVKMLAEGDEVSQ----KQPKMISIVGF 203

Query: 120 NGVGKTT 126
            G+GKTT
Sbjct: 204 GGLGKTT 210


>gi|72383246|ref|YP_292601.1| hypothetical protein PMN2A_1410 [Prochlorococcus marinus str.
           NATL2A]
 gi|124024822|ref|YP_001013938.1| hypothetical protein NATL1_01091 [Prochlorococcus marinus str.
           NATL1A]
 gi|72003096|gb|AAZ58898.1| conserved hypothetical protein [Prochlorococcus marinus str.
           NATL2A]
 gi|123959890|gb|ABM74673.1| Hypothetical protein NATL1_01091 [Prochlorococcus marinus str.
           NATL1A]
          Length = 223

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 19/169 (11%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GV KT     L+   S  G  V L   D  RSA    L+            +   +  + 
Sbjct: 11  GVAKTCTSIHLASVWSSEGKNVCLVDADRNRSALAYGLRGNLKFNIVPVEAAAKATRFSE 70

Query: 181 LA--------YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           +          E   +  A   D++++ TA     +  L   +  +++ L     + PH+
Sbjct: 71  IVITDGQASTDEEELKHLAAGSDLVLLPTA-PKARSVELTVELASLLKQL-----NIPHA 124

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGL-----IMTKMDGTARGGGLI 276
           VL V      +    +          T L     +++  D     G  +
Sbjct: 125 VLLVKVDFRQRRIANEAREALEKFDLTVLEGDIPLLSAFDKAENQGSAV 173


>gi|15668730|ref|NP_247529.1| hypothetical protein MJ_0550 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2496037|sp|Q57970|Y550_METJA RecName: Full=Uncharacterized protein MJ0550
 gi|1591255|gb|AAB98542.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 365

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 40/95 (42%), Gaps = 17/95 (17%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR---LDDGVREELEDLLIRSD 57
           + +++V  E+ ++I      F   S    + + ++    R   +D+    E+   L   D
Sbjct: 119 LDDREVPKEARNYI------FKKLSE--FDNLKEVAIESRPEFIDEDKLNEIRKYL---D 167

Query: 58  IGVAV---AQKIVEELLTKRYAKDVSVQRVLYDVS 89
           + V +    +   EE+  K   K ++ ++++  + 
Sbjct: 168 VNVEIGVGIESFNEEIREKAINKGITNEQIIRAIE 202


>gi|88811495|ref|ZP_01126750.1| probable ClpA/B-type chaperone [Nitrococcus mobilis Nb-231]
 gi|88791384|gb|EAR22496.1| probable ClpA/B-type chaperone [Nitrococcus mobilis Nb-231]
          Length = 915

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 77/226 (34%), Gaps = 36/226 (15%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           VR+E+E +L            +   L  +   +D +++ +   V           +   +
Sbjct: 603 VRDEIEAVL-----------HLATRLAERVKGQDHALEMIARRVQ----------TARAS 641

Query: 105 WDFSHRP-HVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            D   +P  V ++ G +GVGKT T +  L++ +      ++      F+ A         
Sbjct: 642 LDNPGKPMGVFMLAGPSGVGKTETALA-LAETLYGGEQNMITINMSEFQEA--------- 691

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
             T +    +  G           +  + +   V+++D   + H++   +        ++
Sbjct: 692 -HTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEVEKAHSDVHEIFFQVFDKGMM 750

Query: 223 KRLDPHAPH--SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
           +  +       + L +L    G + + Q     A       +  K+
Sbjct: 751 EDGEGRLIDFKNTLVILTTNVGTDLIMQACKEGAERPAAAALTQKL 796


>gi|301626896|ref|XP_002942622.1| PREDICTED: hypothetical protein LOC100496973 [Xenopus (Silurana)
           tropicalis]
          Length = 645

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 21/154 (13%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VIL+VG  G GKTT+I  ++  +     +      D FR       K+  + T+     
Sbjct: 141 KVILLVGATGSGKTTLINGMANYILGVNWE------DDFR------FKLVHEVTNRSQAH 188

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR-----LHNNSILMAGIGKMIRVLKRLD 226
           S+     A + +   +        + +IDT G      +  +  L   I    +  K +D
Sbjct: 189 SQTSEVTAYVIHH--ETGHRIPYSLTLIDTPGFGDTRGIEQDKKLTQDIEAFFKSDKAID 246

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
                +V  V+ ++ G+    Q  +F++V    G
Sbjct: 247 --RIDAVCFVVQSSLGRLTHTQKYVFNSVFSIFG 278


>gi|296388398|ref|ZP_06877873.1| general secretion pathway protein E [Pseudomonas aeruginosa PAb1]
          Length = 501

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 96  LMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVI 128
           +    +    +   +PH IL+V G  G GKTT +
Sbjct: 239 MSERDRKLMDETVRKPHGILLVTGPTGSGKTTTL 272


>gi|296226178|ref|XP_002758847.1| PREDICTED: nuclear receptor subfamily 1 group I member 2-like
           [Callithrix jacchus]
          Length = 453

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 16/111 (14%)

Query: 11  LSWIRKLTKGFASTSLKLKEGITDIISSRR-----------LDDGVREELEDLLIRSDIG 59
             + R+  K  A      ++G  +I    R           L+ G+++E+    I SD+ 
Sbjct: 81  KGFFRRAMKRNARLRCPFRKGACEITRKTRRQCQACRLRKCLESGMKKEM----IMSDVA 136

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-LIHKMLMPLSKPFNWDFSH 109
           V   + +++    +R        + L +  + +I +++    K F+  FSH
Sbjct: 137 VEERRALIKRKKRERIETQPPEIQGLTEEQQMMIRELMDAQMKTFDTTFSH 187


>gi|237741032|ref|ZP_04571513.1| MRP-family nucleotide-binding protein [Fusobacterium sp. 4_1_13]
 gi|229431076|gb|EEO41288.1| MRP-family nucleotide-binding protein [Fusobacterium sp. 4_1_13]
          Length = 257

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 96  LMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++P   P   D  +  +VI ++ G  GVGK+TV   L+K++   G  V +   D
Sbjct: 1   MIPKDAPKVRDDKNIKNVIAVMSGKGGVGKSTVTTLLAKELRKKGYAVGILDAD 54


>gi|298527851|ref|ZP_07015255.1| Cobyrinic acid ac-diamide synthase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511503|gb|EFI35405.1| Cobyrinic acid ac-diamide synthase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 287

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           G  G GKTTV   L+  +   G KV LA  D     A   L
Sbjct: 8   GKGGTGKTTVAVNLALYLQKEGQKVCLADCDVEEPNAHFFL 48


>gi|255542247|ref|XP_002512187.1| xpa-binding protein, putative [Ricinus communis]
 gi|223548731|gb|EEF50221.1| xpa-binding protein, putative [Ricinus communis]
          Length = 407

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 22/119 (18%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           F  +P VI+VVG+ G GKTT + +L        ++  +   D     A+  L   A+   
Sbjct: 59  FKRKPVVIIVVGMAGSGKTTFLHRLISHTQATNIRGYVLNLD----PAVMTLPFGANIDI 114

Query: 167 ADFVCSEIGSDAAALAYEA------------------FKQAQAKKVDVLIIDTAGRLHN 207
            D V  +       L                        + +A ++D +++DT G++  
Sbjct: 115 RDTVRYKEVMKQFNLGPNGGILTSLNLFATKFDEVVSVIEKRANQLDYVLVDTPGQIEI 173


>gi|52549080|gb|AAU82929.1| nucleotide-binding protein [uncultured archaeon GZfos23H9]
          Length = 282

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
            E   + +   ++  +       H ++ + G  GVGKTTV   L+  ++ +GL V L   
Sbjct: 6   EEERKRGMKEEAEAVDTSMRRVKHKVMVMSGKGGVGKTTVAANLAFALAMSGLDVGLMDA 65

Query: 148 D 148
           D
Sbjct: 66  D 66


>gi|125972853|ref|YP_001036763.1| phosphoribulokinase/uridine kinase [Clostridium thermocellum ATCC
           27405]
 gi|256005723|ref|ZP_05430678.1| TGS domain protein [Clostridium thermocellum DSM 2360]
 gi|125713078|gb|ABN51570.1| phosphoribulokinase/uridine kinase [Clostridium thermocellum ATCC
           27405]
 gi|255990296|gb|EEU00423.1| TGS domain protein [Clostridium thermocellum DSM 2360]
 gi|316940909|gb|ADU74943.1| TGS domain-containing protein [Clostridium thermocellum DSM 1313]
          Length = 557

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 51/160 (31%)

Query: 1   MSNQKVASESLSWIRKLTKGFA-----STSLKL-----KEGITDIISSRRLDDGVREELE 50
           MS +K + +++   ++  K F+         K+        + DI+   ++++       
Sbjct: 213 MSPEKTSPDAIPQFKEQKKLFSIFAEYKKWGKILGVEDVSALNDIVKEGKINE------- 265

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
             LI          ++ E L  K+ A+              I  M+      FN    H+
Sbjct: 266 --LI----------RVAEALHEKKIAQ--------------IADMI-----AFN---EHK 291

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
             V+L+ G +  GKTT   +LS ++   GL+ +  + D +
Sbjct: 292 KKVVLIAGPSSSGKTTFAHRLSIQLKVNGLRPVTISLDDY 331


>gi|15598299|ref|NP_251793.1| general secretion pathway protein E [Pseudomonas aeruginosa PAO1]
 gi|107102652|ref|ZP_01366570.1| hypothetical protein PaerPA_01003717 [Pseudomonas aeruginosa PACS2]
 gi|116051099|ref|YP_790070.1| general secretion pathway protein E [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890697|ref|YP_002439561.1| general secretion pathway protein E [Pseudomonas aeruginosa LESB58]
 gi|254236073|ref|ZP_04929396.1| general secretion pathway protein E [Pseudomonas aeruginosa C3719]
 gi|254241800|ref|ZP_04935122.1| general secretion pathway protein E [Pseudomonas aeruginosa 2192]
 gi|313108413|ref|ZP_07794429.1| general secretion pathway protein E [Pseudomonas aeruginosa 39016]
 gi|139789|sp|Q00512|GSPE_PSEAE RecName: Full=General secretion pathway protein E; AltName:
           Full=Type II traffic warden ATPase
 gi|9949213|gb|AAG06491.1|AE004734_9 general secretion pathway protein E [Pseudomonas aeruginosa PAO1]
 gi|45434|emb|CAA44533.1| secretion protein XcpR [Pseudomonas aeruginosa PAO1]
 gi|115586320|gb|ABJ12335.1| general secretion pathway protein E [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168004|gb|EAZ53515.1| general secretion pathway protein E [Pseudomonas aeruginosa C3719]
 gi|126195178|gb|EAZ59241.1| general secretion pathway protein E [Pseudomonas aeruginosa 2192]
 gi|218770920|emb|CAW26685.1| general secretion pathway protein E [Pseudomonas aeruginosa LESB58]
 gi|310880931|gb|EFQ39525.1| general secretion pathway protein E [Pseudomonas aeruginosa 39016]
          Length = 502

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 96  LMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVI 128
           +    +    +   +PH IL+V G  G GKTT +
Sbjct: 240 MSERDRKLMDETVRKPHGILLVTGPTGSGKTTTL 273


>gi|332685595|ref|YP_004455369.1| DNA topology modulation protein FlaR [Melissococcus plutonius ATCC
           35311]
 gi|332369604|dbj|BAK20560.1| DNA topology modulation protein FlaR [Melissococcus plutonius ATCC
           35311]
          Length = 178

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 12/54 (22%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           +++ +  +L    K            IL++G NG GK+TV  KL ++       
Sbjct: 2   INDELKGILQDKKK------------ILIIGPNGAGKSTVAAKLGEQFKMKVYH 43


>gi|300721531|ref|YP_003710806.1| ATP-dependent zinc-metallo protease [Xenorhabdus nematophila ATCC
           19061]
 gi|297628023|emb|CBJ88572.1| ATP-dependent zinc-metallo protease [Xenorhabdus nematophila ATCC
           19061]
          Length = 637

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  F       P  IL+VG  G GKT     L+K ++        
Sbjct: 163 EAKEEVGELVEYLREPGRFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 218

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 219 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 262

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 263 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 308


>gi|241763428|ref|ZP_04761482.1| general secretory pathway protein E [Acidovorax delafieldii 2AN]
 gi|241367370|gb|EER61691.1| general secretory pathway protein E [Acidovorax delafieldii 2AN]
          Length = 648

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 21/113 (18%)

Query: 60  VAVA--QKIVEELLTKRYAK-DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           V     + +V  +L +   + ++       D  E  + +L             RPH IL+
Sbjct: 353 VPTVHGESVVMRVLDRASVRLELEKMGFEKDTLERFNTLLA------------RPHGILL 400

Query: 117 V-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---FRSAAIDQLKIWADRT 165
           V G  G GKTT +   +           +   +    ++   I+Q+++ +   
Sbjct: 401 VTGPTGSGKTTTL--YAALAKIDASAQKIITVEDPVEYQLEGINQIQVHSQIN 451


>gi|199597966|ref|ZP_03211391.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Lactobacillus rhamnosus HN001]
 gi|258507295|ref|YP_003170046.1| ABC transporter ATP-binding protein [Lactobacillus rhamnosus GG]
 gi|199591223|gb|EDY99304.1| ATPase component of ABC transporter with duplicated ATPase domains
           [Lactobacillus rhamnosus HN001]
 gi|257147222|emb|CAR86195.1| ABC transporter, ATP-binding protein [Lactobacillus rhamnosus GG]
 gi|259648660|dbj|BAI40822.1| ABC transporter ATP-binding component [Lactobacillus rhamnosus GG]
          Length = 515

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           +++L DV++L+     PL +P N+  + +  VI   G NGVGK+T++  +   +   G  
Sbjct: 318 RQMLVDVNDLVVGYDKPLLQPINFSVA-KDQVIAFEGFNGVGKSTLLKTILGLLPALGGS 376

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           V +A   TF     +Q   W     +  
Sbjct: 377 VEIADNVTF--GYYEQELHWDQPKQSPV 402


>gi|116334119|ref|YP_795646.1| deoxynucleoside kinase [Lactobacillus brevis ATCC 367]
 gi|116099466|gb|ABJ64615.1| Deoxynucleoside kinase [Lactobacillus brevis ATCC 367]
          Length = 215

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM 135
           VI+  G+ GVGKTT+ GK++  +
Sbjct: 2   VIITAGMIGVGKTTLTGKIASHL 24


>gi|76155378|gb|AAX26659.2| SJCHGC07129 protein [Schistosoma japonicum]
          Length = 230

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           Q  L    + + ++   ++K      S    +IL+ G  G GKTT +
Sbjct: 36  QEDLAVHKDKLKELHTCINKSLTTKKSIGGPIILLTGPTGSGKTTAV 82


>gi|152972102|ref|YP_001337248.1| ATP-dependent metalloprotease [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896685|ref|YP_002921430.1| ATP-dependent metalloprotease [Klebsiella pneumoniae NTUH-K2044]
 gi|329997735|ref|ZP_08302903.1| cell division protease FtsH [Klebsiella sp. MS 92-3]
 gi|150956951|gb|ABR78981.1| ATP-dependent zinc-metallo protease [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549012|dbj|BAH65363.1| ATP-dependent zinc-metallo protease [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328538924|gb|EGF64983.1| cell division protease FtsH [Klebsiella sp. MS 92-3]
          Length = 644

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 153 DVAGCDEAKEEVGELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 208 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 251

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|71394074|gb|AAZ32113.1| isoleucyl-tRNA synthetase [uncultured euryarchaeote Alv-FOS5]
          Length = 945

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 14/119 (11%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG-VAVAQK 65
           A E +S   K+ K   S    L + +      +   D V EE        D+G V +A++
Sbjct: 807 AVEVVSEDEKVKKALDSLGNVLLKMVNAKSVGKVSGDAVEEEF-------DLGKVRIAKE 859

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           + ++LL +  A ++     +  V E   K  M + +  +   S  P +  + G+   GK
Sbjct: 860 LSDDLLKEALASEL-----IRRVQEARKKAGMNVDEKISLTVSGHPLLSEISGLV-SGK 912


>gi|19526970|ref|NP_598517.1| GPN-loop GTPase 1 [Mus musculus]
 gi|34925345|sp|Q8VCE2|GPN1_MOUSE RecName: Full=GPN-loop GTPase 1; AltName: Full=MBD2-interacting
           protein; Short=MBDin; AltName: Full=XPA-binding protein
           1
 gi|18044064|gb|AAH20174.1| GPN-loop GTPase 1 [Mus musculus]
 gi|26346551|dbj|BAC36923.1| unnamed protein product [Mus musculus]
 gi|66792514|gb|AAH96466.1| GPN-loop GTPase 1 [Mus musculus]
 gi|74144765|dbj|BAE27360.1| unnamed protein product [Mus musculus]
 gi|74219305|dbj|BAE26784.1| unnamed protein product [Mus musculus]
 gi|148705422|gb|EDL37369.1| XPA binding protein 1 [Mus musculus]
          Length = 372

 Score = 38.3 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           S+P        P  +LV+G+ G GKTT + +L+  + + G    +   D
Sbjct: 8   SEPQASRAPQPPVCLLVLGMAGSGKTTFVQRLTGHLHNKGCPPYVINLD 56


>gi|312128219|ref|YP_003993093.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778238|gb|ADQ07724.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 616

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 24/184 (13%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L  K    DV+      +  + +   L    K      +  P  IL+VG  G GKT 
Sbjct: 158 IQDLKRKVTFADVAGADEEKEELKEVIDFLKNPRKYIELG-ARIPKGILLVGPPGTGKT- 215

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
               L+K ++                A +    I        FV                
Sbjct: 216 ---LLAKAVAGE--------------AGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKR 258

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                  +D   ID  GR     +          + ++L  +D    +  + V+ AT   
Sbjct: 259 NAPCVVFIDE--IDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFGTNEGIIVMAATNRP 316

Query: 244 NALR 247
           + L 
Sbjct: 317 DILD 320


>gi|290511555|ref|ZP_06550924.1| cell division protease FtsH [Klebsiella sp. 1_1_55]
 gi|289776548|gb|EFD84547.1| cell division protease FtsH [Klebsiella sp. 1_1_55]
          Length = 644

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 153 DVAGCDEAKEEVGELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 208 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 251

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|167619939|ref|ZP_02388570.1| partition protein [Burkholderia thailandensis Bt4]
 gi|167906445|ref|ZP_02493650.1| partition protein [Burkholderia pseudomallei NCTC 13177]
 gi|254192893|ref|ZP_04899328.1| ParA protein [Burkholderia pseudomallei S13]
 gi|169649647|gb|EDS82340.1| ParA protein [Burkholderia pseudomallei S13]
          Length = 217

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 114 ILVVG--VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           IL VG    GVGK+T   +L+  ++  G +V L  GD+ R++           T    + 
Sbjct: 2   ILAVGNPKGGVGKSTTAVQLAIGLALDGARVWLVDGDSQRTS--LSAITARAHTGRPLIA 59

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           +   +D  +L  +  +Q    + D ++ID  GR 
Sbjct: 60  ASAYADGPSLRAQVLQQC--VQFDQVVIDVGGRD 91


>gi|156082435|ref|XP_001608702.1| ATPase, AAA family domain containing protein [Babesia bovis T2Bo]
 gi|154795951|gb|EDO05134.1| ATPase, AAA family domain containing protein [Babesia bovis]
          Length = 671

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 28/204 (13%)

Query: 53  LIRSD-----IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWD 106
           L+ +D     IG+A+  KI + +      +D++    +     L +K+  P+ +P  +  
Sbjct: 364 LVSADMTAEIIGLAIDMKI-DPISFNIKEEDIAGLEQVK--KTLKNKVAQPILRPELHTG 420

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
               P  +L+ G  G GKTT    L+K +++               A     ++     +
Sbjct: 421 LLRAPKGVLLFGPPGTGKTT----LAKWIAN--------------VAGATCFEVSPSSIT 462

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG-KMIRVLKRL 225
           + +         A     AF Q      D +      R  N   L   +  ++++++  L
Sbjct: 463 SKYHGESESIIKALFKVAAFDQPSIIFFDEVDALLGKRSGNEPDLSIRMKNQLLQMMDGL 522

Query: 226 DPHAPHSVLQVLDATTGQNALRQV 249
                + V+ V+ AT     L   
Sbjct: 523 HSGDRNGVVVVIAATNRPMVLDDA 546


>gi|126178420|ref|YP_001046385.1| hydrogenase accessory protein HypB [Methanoculleus marisnigri JR1]
 gi|125861214|gb|ABN56403.1| hydrogenase accessory protein HypB [Methanoculleus marisnigri JR1]
          Length = 215

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 68/202 (33%), Gaps = 34/202 (16%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV V++ +YDV+  +        K              ++G  G GKT  I +L   +  
Sbjct: 5   DVHVEKDIYDVNNRLADANAAHLKDHGIRAFD------LLGAIGSGKTATIERLVPLIRK 58

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV---CSEIGSDAAALAYEAFKQAQAKKV 194
            GL+    AGD +     D  K                +     A L   A +     ++
Sbjct: 59  RGLRAGAIAGDVY---GDDDFKRIV-ALDVPAYNANTGKECHLDAHLVEHAIEHLPLDEI 114

Query: 195 DVLIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
           D+L I+  G +    +  L A      R++             V+ +T G + + +  M 
Sbjct: 115 DILFIENVGNMVCPTDFRLGAE----KRIV-------------VVSSTEGDDVVNKHPMM 157

Query: 253 HAVAGTTGLIMTKMDGTARGGG 274
              +     ++ K+D     G 
Sbjct: 158 FRSSNIG--VINKVDLAGFVGA 177


>gi|111223133|ref|YP_713927.1| putative thymidylate kinase [Frankia alni ACN14a]
 gi|111150665|emb|CAJ62366.1| putative Thymidylate kinase (dTMP kinase) [Frankia alni ACN14a]
          Length = 263

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
             RP VI ++GV+GVGKTT   +L++ ++ AG           R 
Sbjct: 4   RRRPPVIALLGVDGVGKTTQARRLARTLTAAGQPASYFENGGGRP 48


>gi|329116140|ref|ZP_08244857.1| arsenite-transporting ATPase [Streptococcus parauberis NCFD 2020]
 gi|326906545|gb|EGE53459.1| arsenite-transporting ATPase [Streptococcus parauberis NCFD 2020]
          Length = 571

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           +VQ  L ++   + +    LS   +        +I  +G  GVGKT V  K+++ +   G
Sbjct: 295 TVQPELPEIDSEMREY-PELSTVIDNFVKTGKKIIFTMGKGGVGKTNVAIKVAQALQKQG 353

Query: 140 LKVMLAAGD 148
            KV LA  D
Sbjct: 354 KKVHLATTD 362


>gi|328544431|ref|YP_004304540.1| ATP-binding protein (Mrp protein-like) [polymorphum gilvum
           SL003B-26A1]
 gi|326414173|gb|ADZ71236.1| Probable ATP-binding protein (Mrp protein-like) [Polymorphum gilvum
           SL003B-26A1]
          Length = 381

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           P +           H+I V  G  GVGK+T    L+  +   GL+V +   D +
Sbjct: 106 PEASSAKPGVPGVRHIIAVASGKGGVGKSTTTANLALALKANGLRVGVLDADIY 159


>gi|312371681|gb|EFR19805.1| hypothetical protein AND_21784 [Anopheles darlingi]
          Length = 4911

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 13/93 (13%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            V + I+E L+      + +     +D    + +M +  +K   +D       +L+VG  
Sbjct: 467 KVTRTILERLMQATKVGEQANIVWTFD----MRRMAVLTAKALQFDEP-----VLLVGPT 517

Query: 121 GVGKTTVIGKLS----KKMSDAGLKVMLAAGDT 149
           G GKTTV   L+    + +      +     D 
Sbjct: 518 GCGKTTVCQLLASLENRNLRILNCHMHTEGADF 550


>gi|291532683|emb|CBL05796.1| LAO/AO transport system ATPase [Megamonas hypermegale ART12/1]
          Length = 326

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 38/210 (18%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRT--- 165
            V+ + G  G GK+T+  +L++   + G  V + A D    F   AI   +I  +     
Sbjct: 44  FVLGITGPPGAGKSTLTDRLARAYRNQGKTVGIIAIDPTSPFTGGAILGDRIRMNSLTLD 103

Query: 166 -SADFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                           L++   +A K   A   DV+I++T G   +              
Sbjct: 104 EGVFIRSMGTRGSLGGLSHKTADAIKAMDAFGKDVIIVETVGVGQSEVD----------- 152

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTK--MDGTARGGGLIPIV 279
                  A  + + V+    G + ++ ++      G     + K  +DG  +    + ++
Sbjct: 153 ----IVKAADTTMVVMVPGLG-DDIQAIKAGILEIG-DIFTINKADLDGADKLYTELNMM 206

Query: 280 VTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           +           GE   D  P V K  ++ 
Sbjct: 207 LDLD--------GET-PDWRPPVKKVMASR 227


>gi|289470293|gb|ADC96668.1| ABC transporter [Streptomyces sp. SN-1061M]
          Length = 1237

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 22/158 (13%)

Query: 114  ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---------TFRSAAIDQLKIWADR 164
            + VVG  G GK+T+I  L++        + +   D           R+A + Q       
Sbjct: 1016 VAVVGPTGAGKSTIIKLLARFYQPQQGAIRVGGVDAATIPLRDYRRRTAIVPQEAHLFSG 1075

Query: 165  TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT------AGRLHNNSILMAGIGKM 218
            + A+ +       +AA   +A +   A +    +ID+       G     S L AG  ++
Sbjct: 1076 SVAENIGFGRPEASAAEITDAVRAFGASE----MIDSLPGGLDYGVGPRGSALSAGQRQV 1131

Query: 219  IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
            + +L+ +        L +LD  T    L          
Sbjct: 1132 VALLRAIVSDPD---LLLLDEATCALDLESERSIVNAL 1166


>gi|290986637|ref|XP_002676030.1| guanine nucleotide-binding protein G(i) subunit alpha [Naegleria
           gruberi]
 gi|284089630|gb|EFC43286.1| guanine nucleotide-binding protein G(i) subunit alpha [Naegleria
           gruberi]
          Length = 608

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 17/155 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKK------MSDAGLKVMLAAGDTFR-------SAAIDQLKI 160
           IL++G+NG GK+T+I KL +       + D  L   LA   TFR          I QL +
Sbjct: 73  ILLLGLNGAGKSTIIKKLKEYITEKNSLHDENLVDHLALNKTFRDIIHFHALNGIKQLIL 132

Query: 161 WADRTSADFVC-SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            +++     +       +    A         +  + ++     RL     L+       
Sbjct: 133 ASEKLDISILPRHSEQKNDIEFAISYLSNLHFRYGEHVLTSEVARLMK---LLWEQRGAK 189

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
            +      +       +      +         H 
Sbjct: 190 EIHSEFIEYRNQQAQLLQQKQLNEAVSENATENHE 224


>gi|256752497|ref|ZP_05493354.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748632|gb|EEU61679.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 570

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
                 + +      AP+ V+ V    + +   R  E  +A     G+ +   D   R G
Sbjct: 455 EQHHDEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKEGIEVLIDDRDLRAG 514

Query: 274 GLIPIVVTHKIPVYFLGVGEGIND 297
                     IP+  + VG+ ++D
Sbjct: 515 VKFNDADLLGIPIR-ITVGKKVDD 537


>gi|241762105|ref|ZP_04760188.1| carbohydrate kinase, thermoresistant glucokinase family [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|241373355|gb|EER62955.1| carbohydrate kinase, thermoresistant glucokinase family [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 165

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           +I+V+GV+G GK+TV   L+K +            D F   A          ++   +  
Sbjct: 2   IIVVMGVSGCGKSTVGADLAKHL-----HCDFQDADDFHPQANK-----DKMSNGIPLTD 51

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLI 198
           E          +   + +A   DV+ 
Sbjct: 52  EDRWPWLRAIRDYMDKEKAVGHDVVF 77


>gi|237728490|ref|ZP_04558971.1| arsenite activated ATPase [Citrobacter sp. 30_2]
 gi|226909968|gb|EEH95886.1| arsenite activated ATPase [Citrobacter sp. 30_2]
          Length = 583

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++  ++D G  V L   D    AA     +     +       
Sbjct: 330 IMLMGKGGVGKTTMAAAIAVSLADKGFDVHLTTSD---PAAHLSTTLNGSLKNLQVGRIN 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    K  D+   D AG+      L +   + I V + 
Sbjct: 387 PHDETERYRQHVLE---TKGRDL---DEAGKRLLEEDLRSPCTEEIAVFQA 431


>gi|188997127|ref|YP_001931378.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932194|gb|ACD66824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 497

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +  ++Y + +  + +   +++   K L   S  F  + S +  VI + G NG  KTT   
Sbjct: 65  IEDEKYVESLKGKNITVVLTDNGRKSLALASNRFYDNPSEKLKVIAITGTNG--KTTTSN 122

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSA 153
            L++    AG KV +     +R  
Sbjct: 123 LLAQYYEMAGYKVGVIGTINYRVG 146


>gi|71993390|ref|NP_491529.2| hypothetical protein Y110A7A.6 [Caenorhabditis elegans]
 gi|57901007|gb|AAF60424.2| Hypothetical protein Y110A7A.6a [Caenorhabditis elegans]
          Length = 450

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 11/141 (7%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+VI +VG+   GKT +  KL + ++  G+K        +R  A + L+   +       
Sbjct: 29  PNVIALVGLPARGKTYISHKLCRYLNWIGIKTKAFNVGEYRRRACN-LEEEGENEFFSPN 87

Query: 171 CSEIGSDAAALAYEAFK----QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            +         A  A +        K+ +V I+D      +   L+          + + 
Sbjct: 88  NARGQKIRDECAKLAIEDMGRYLDNKEGEVAILDATNTTRDRRKLLMEF------CRNMM 141

Query: 227 PHAPHSVLQVLDATTGQNALR 247
              P  V  V       + + 
Sbjct: 142 HEPPFRVFFVESVCDDPDIIN 162


>gi|17510917|ref|NP_491530.1| hypothetical protein Y110A7A.6 [Caenorhabditis elegans]
 gi|16041631|gb|AAK68884.2|AC006708_18 Hypothetical protein Y110A7A.6b [Caenorhabditis elegans]
          Length = 435

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 11/141 (7%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P+VI +VG+   GKT +  KL + ++  G+K        +R  A + L+   +       
Sbjct: 35  PNVIALVGLPARGKTYISHKLCRYLNWIGIKTKAFNVGEYRRRACN-LEEEGENEFFSPN 93

Query: 171 CSEIGSDAAALAYEAFK----QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            +         A  A +        K+ +V I+D      +   L+          + + 
Sbjct: 94  NARGQKIRDECAKLAIEDMGRYLDNKEGEVAILDATNTTRDRRKLLMEF------CRNMM 147

Query: 227 PHAPHSVLQVLDATTGQNALR 247
              P  V  V       + + 
Sbjct: 148 HEPPFRVFFVESVCDDPDIIN 168


>gi|116618213|ref|YP_818584.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097060|gb|ABJ62211.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 632

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 77/214 (35%), Gaps = 26/214 (12%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            L ++   +D ++++V           +   ++      + +P   L +G  GVGKT   
Sbjct: 294 RLKSQVIGQDTALEKV----------AMKLTNREAGLADTSKPESFLFMGPTGVGKTETA 343

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            +L+  +       +      F+ A           TS +    ++ +      Y     
Sbjct: 344 KQLALNLFGNKQNFIRFDMSEFKFAG----------TSLERFKDQLTTRVRHTPYAVLLL 393

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV-LQVLDATTGQNALR 247
            + +K D  ++D   ++ ++  L    G++I     +     +S    V++     +A++
Sbjct: 394 DEIEKADPEVMDLLLQVLDDGRLSDEYGRVINFKDLIIVMTTNSGATAVMNRDAKSDAVK 453

Query: 248 QVEMFHAVAGTTGLIMTKMDGT-----ARGGGLI 276
           + +   A       I  + DG      AR G +I
Sbjct: 454 EDKKRQANFEEQLEIALQSDGYRPEFIARIGAII 487


>gi|332883300|gb|EGK03583.1| hypothetical protein HMPREF9456_01650 [Dysgonomonas mossii DSM
           22836]
          Length = 572

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK-IWADRTSADFVC 171
           VI  +G  GVGKTT+ G +++ ++  G+KV L   D       + L  I           
Sbjct: 330 VIFTMGKGGVGKTTIAGNIARGLAQKGVKVHLTTTD-----PANHLSFIETKVEGITVSH 384

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK---RLDPH 228
            +  +  AA      ++A+    D      A   +    L +   + I V      +   
Sbjct: 385 IDERAVLAAYQKNVLEKARETMGD------ADLSYIEEDLRSPCTQEIAVFNSFAEIVAK 438

Query: 229 APHSVLQVLDATTGQ 243
           A + V+ +  A TG 
Sbjct: 439 ADNEVVVIDTAPTGH 453


>gi|262042737|ref|ZP_06015891.1| ATP-dependent metallopeptidase HflB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039962|gb|EEW41079.1| ATP-dependent metallopeptidase HflB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 644

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 153 DVAGCDEAKEEVGELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 208 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 251

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|269792970|ref|YP_003317874.1| AAA ATPase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100605|gb|ACZ19592.1| AAA ATPase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 547

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 15/98 (15%)

Query: 57  DI-GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH-KMLMPLSKPFNWDFSHRPHV- 113
           D+ GV     I E + + R  +       L  +SE +H + L  +S+        RP V 
Sbjct: 236 DVLGVTTMDSIHERVTSGRGLE-------LILISEALHGEALARVSREI----CDRPDVR 284

Query: 114 -ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            + + G +G GKTT   +L  ++   G + +  + D +
Sbjct: 285 LVCLAGPSGSGKTTTARRLMVQLQVCGKRPVAISLDDY 322


>gi|300774826|ref|ZP_07084689.1| ATP-dependent metallopeptidase HflB [Chryseobacterium gleum ATCC
           35910]
 gi|300506641|gb|EFK37776.1| ATP-dependent metallopeptidase HflB [Chryseobacterium gleum ATCC
           35910]
          Length = 673

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 25/186 (13%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E+   +   KDV+      +  + +   L   S+ +       P  +L+VG  G GKT  
Sbjct: 179 EKERIQVTFKDVAGLEGAKEEVQEVVDFLKN-SEKYTKLGGKIPKGVLLVGPPGTGKT-- 235

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L+K ++        +   +                   FV           A    K
Sbjct: 236 --LLAKAVAGEAKVPFFSLSGS--------------DFVEMFVGVGASRVRDLFAQAKAK 279

Query: 188 QAQAKKVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                 +D   ID  GR    +            + ++L  +D     + + V+ AT   
Sbjct: 280 SPAIIFIDE--IDAIGRARGKNNFSGGNDERENTLNQLLTEMDGFGTDTNVIVMAATNRA 337

Query: 244 NALRQV 249
           + L + 
Sbjct: 338 DILDKA 343


>gi|206578792|ref|YP_002236410.1| ATP-dependent metallopeptidase HflB [Klebsiella pneumoniae 342]
 gi|288933394|ref|YP_003437453.1| ATP-dependent metalloprotease FtsH [Klebsiella variicola At-22]
 gi|206567850|gb|ACI09626.1| ATP-dependent metallopeptidase HflB [Klebsiella pneumoniae 342]
 gi|288888123|gb|ADC56441.1| ATP-dependent metalloprotease FtsH [Klebsiella variicola At-22]
          Length = 647

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 156 DVAGCDEAKEEVGELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 210

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 211 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 254

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 255 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|38049259|gb|AAR10430.1| putative ATP/GTP binding protein [Enterococcus faecium]
          Length = 172

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 15/168 (8%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
               K      +  P +I++ GV G GKTT     ++++   G   +    + ++     
Sbjct: 5   EENVKGILRQITSNPLIIMMCGVAGSGKTT----FAQRLETEGFVRLSIDEEIWKVNGRY 60

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
            +    ++     V +E       +     +  +   +D      A R     ++    G
Sbjct: 61  GIDYPVEKYGDYQVEAERRLRNQLI--RLIQDKRKVVIDFSFWQKAKRDEYKQLIEEAGG 118

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           +   V  ++ P      L V       NA             T  I+T
Sbjct: 119 EWKLVYLKVSPEIIRKRLNVRSKRFDANA---------AFPITEDILT 157


>gi|85712140|ref|ZP_01043192.1| putative tyrosine-protein kinase Wzc [Idiomarina baltica OS145]
 gi|85693948|gb|EAQ31894.1| putative tyrosine-protein kinase Wzc [Idiomarina baltica OS145]
          Length = 376

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 13/117 (11%)

Query: 47  EELEDLLI-------RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE---LIHKML 96
           +ELE++ I       +SD+ + + ++I  +    R +K V     L  V+E   L  + L
Sbjct: 107 DELEEVGINVYASVPKSDVQLKLEEQIARQ-RKGRSSKSVPSYVPLLAVAEPTDLAVEAL 165

Query: 97  MPLSKPFNWD-FSHRPHVILVVGVN-GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             L    ++     + +++++ G + GVGK+ +   L+  ++ +G KV++   D  R
Sbjct: 166 RGLRTSLHFAMLEAKNNILMISGPSPGVGKSFITANLAVVLAQSGKKVVVIDVDLRR 222


>gi|330999084|ref|ZP_08322807.1| ParA family protein [Parasutterella excrementihominis YIT 11859]
 gi|329575605|gb|EGG57139.1| ParA family protein [Parasutterella excrementihominis YIT 11859]
          Length = 227

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTTV  +L+   +  G KV    GD  ++ A+  L +  ++     V     SD  +
Sbjct: 15  GTGKTTVALQLAIARARQGKKVWFVDGDRQQTGALA-LSLRLEQKGKKEVPFATYSDGKS 73

Query: 181 LAYEAFKQAQAKKVDVLIIDTAG 203
           L +   K   + + D +IID  G
Sbjct: 74  LQFNVRK--LSDQFDTVIIDVGG 94


>gi|307246005|ref|ZP_07528087.1| hypothetical protein appser1_12060 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306852940|gb|EFM85163.1| hypothetical protein appser1_12060 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 857

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 73/192 (38%), Gaps = 35/192 (18%)

Query: 38  SRRLDDGVREELE---DLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVS 89
            ++L + V+ E E   + L+R+     V ++ + E+L+K     VS      +  L  + 
Sbjct: 508 EKQLHEAVKREEEGSENQLLRA----KVTEEEIAEVLSKATGIPVSKMMEGEKEKLLRME 563

Query: 90  ELIHKMLMPLSKPFN------------WDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMS 136
           E++H  ++  ++                   +RP    L +G  GVGKT +   L+  + 
Sbjct: 564 EVLHSRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLF 623

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           D    +        R    + ++  +           +G +      EA ++   +   V
Sbjct: 624 DDPDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRR---RPYSV 673

Query: 197 LIIDTAGRLHNN 208
           +++D   + H +
Sbjct: 674 VLLDEVEKAHPD 685


>gi|300714999|ref|YP_003739802.1| Clp ATPase [Erwinia billingiae Eb661]
 gi|299060835|emb|CAX57942.1| Clp ATPase [Erwinia billingiae Eb661]
          Length = 888

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 74/218 (33%), Gaps = 34/218 (15%)

Query: 51  DLLIRSDIGVAVAQKIVEE---LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--- 104
           D LI+ D+       ++ +   +      KD   Q  L  +   I + ++    P N   
Sbjct: 541 DALIQVDVDTRTVANVIADWTGVPLSALMKD--EQTGLLGLEAEIGRRVVGQDVPLNAIA 598

Query: 105 ----------WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-SA 153
                        +    V L+VG +G GKT     L+  +      ++      ++   
Sbjct: 599 QRLRAAKTGLTAENGPQGVFLLVGPSGTGKTGSALALADVLYGGERSLITLNLSEYQEPH 658

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS-ILM 212
            + QLK              +G     +  EA    + +   V+++D   + H +   L 
Sbjct: 659 TVSQLKGSP--------PGYVGYGQGGILTEAV---RKRPYSVVLLDEVEKAHRDVLNLF 707

Query: 213 AG--IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
                   +R  +  +    ++V+  + +  G +A+ Q
Sbjct: 708 YQVFDRGFMRDGEGREIDFRNTVIL-MTSNLGSDAIMQ 744


>gi|242240338|ref|YP_002988519.1| shikimate kinase II [Dickeya dadantii Ech703]
 gi|242132395|gb|ACS86697.1| Shikimate kinase [Dickeya dadantii Ech703]
          Length = 173

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 12/80 (15%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I +VG  G GKTTV GKL+       L       D F       ++  +  T AD V SE
Sbjct: 5   IFMVGARGCGKTTVGGKLA-----QALGYEFVDTDIF-------MQETSGMTVADVVTSE 52

Query: 174 IGSDAAALAYEAFKQAQAKK 193
                     EA ++     
Sbjct: 53  GWPGFRRRESEALQRVSRPN 72


>gi|167039496|ref|YP_001662481.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300915254|ref|ZP_07132569.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307725178|ref|YP_003904929.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|226701350|sp|B0K5F2|SYP_THEPX RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166853736|gb|ABY92145.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300888978|gb|EFK84125.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307582239|gb|ADN55638.1| prolyl-tRNA synthetase [Thermoanaerobacter sp. X513]
          Length = 570

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
                 + +      AP+ V+ V    + +   R  E  +A     G+ +   D   R G
Sbjct: 455 EQHHDEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKEGIEVLIDDRDLRAG 514

Query: 274 GLIPIVVTHKIPVYFLGVGEGIND 297
                     IP+  + VG+ ++D
Sbjct: 515 VKFNDADLLGIPIR-ITVGKKVDD 537


>gi|89055533|ref|YP_510984.1| nitrate transport ATP-binding subunits C and D [Jannaschia sp.
           CCS1]
 gi|88865082|gb|ABD55959.1| nitrate transport ATP-binding subunits C and D [Jannaschia sp.
           CCS1]
          Length = 557

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 9/176 (5%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P+    N +      ++L+ G +G GKTT+I  ++   + +  +V              
Sbjct: 16  TPVLSDINLEIKEGEFLVLL-GFSGTGKTTLINLMAGLEAPSKGEVTFKGAPVVEPGPER 74

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
            +             +     A    +    +A+  K     +D  G     +   A + 
Sbjct: 75  GVIFQNYSLMPWLTVAGNVGLAVDTMFGDLPRAERAKRVDRYVDMVGLTPAATRRPAELS 134

Query: 217 KMIRVLKRL------DPHA--PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
             +R    +      DP        L  LDA T  N   ++E     +  T +++T
Sbjct: 135 GGMRQRVNVARALAMDPEMLLLDEPLSALDALTRANLAEEIERIWEASKKTCVLIT 190


>gi|70605913|ref|YP_254783.1| hypothetical protein Saci_0061 [Sulfolobus acidocaldarius DSM 639]
 gi|68566561|gb|AAY79490.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 319

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 12/151 (7%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L        +++ R+L  +  L  + L  L +      S + HVI + G  G GK+T+I 
Sbjct: 4   LDEALKGNQLAIGRLLTKIEYLTPEGLDALEQLMK--NSGKAHVIGITGSPGSGKSTLIS 61

Query: 130 KLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKI------WADRTSADFVCS-EIGSDAA 179
           KL  +  + G +V +   D    F   +    +I      + ++     + S       +
Sbjct: 62  KLVSEYLNRGHRVGVILIDPSSPFSLGSFMGNRIRLSEDEFGEKVFIRSIGSRGYLGGIS 121

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           + A    +       D ++++T G    ++ 
Sbjct: 122 SEALMLVEALDGLGFDRILVETVGAGQTDTE 152


>gi|167036776|ref|YP_001664354.1| prolyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115198|ref|YP_004185357.1| prolyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|226701349|sp|B0KCH5|SYP_THEP3 RecName: Full=Prolyl-tRNA synthetase; AltName: Full=Proline--tRNA
           ligase; Short=ProRS
 gi|166855610|gb|ABY94018.1| prolyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928289|gb|ADV78974.1| prolyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 570

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
                 + +      AP+ V+ V    + +   R  E  +A     G+ +   D   R G
Sbjct: 455 EQHHDEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKEGIEVLIDDRDLRAG 514

Query: 274 GLIPIVVTHKIPVYFLGVGEGIND 297
                     IP+  + VG+ ++D
Sbjct: 515 VKFNDADLLGIPIR-ITVGKKVDD 537


>gi|330814661|ref|YP_004362836.1| ATPase [Burkholderia gladioli BSR3]
 gi|327374653|gb|AEA66004.1| ATPase [Burkholderia gladioli BSR3]
          Length = 893

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 76/238 (31%), Gaps = 34/238 (14%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD-----IGVAVAQKI-- 66
           + +L +        L+     +     +D+ +  E     I SD     +G  V  ++  
Sbjct: 521 LERLRE-LERALTTLQGDAPLVFPE--VDEAIVAE-----IVSDWTGIPVGRMVTDEVAA 572

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT- 125
           V  L     A+ +     L  + E +      L+ P          V L+ G +GVGKT 
Sbjct: 573 VRRLPETLEARVIGQSDALRVIGERVQTARAGLTDP-----KKPLGVFLLAGPSGVGKTE 627

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T +  L++ +      ++      ++ A  +  LK            +  G         
Sbjct: 628 TALA-LAEALYGGEQNLITINMSEYQEAHTVSGLK-----------GAPPGYVGYGEGGV 675

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
             +  + +   V+++D   + H +   M         ++  D          +  T+ 
Sbjct: 676 LTEAVRRRPYSVVLLDEVEKAHRDVHEMFFQVFDKGYMEDGDGRHIDFCNTTILLTSN 733


>gi|325566951|ref|ZP_08143729.1| cyclic beta-1,2-glucan ABC superfamily ATP binding cassette
           transporter, ABC/membrane protein [Enterococcus
           casseliflavus ATCC 12755]
 gi|325159123|gb|EGC71268.1| cyclic beta-1,2-glucan ABC superfamily ATP binding cassette
           transporter, ABC/membrane protein [Enterococcus
           casseliflavus ATCC 12755]
          Length = 594

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 21/177 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAIDQLKI 160
           N +FS +P   + +VG  G GKTT+I  L +     G K++L   D  +F + A+   K 
Sbjct: 374 NVEFSVKPKQTVAIVGPTGAGKTTMINLLMRFYPLNGGKILLDDQDMMSFSAPAVR--KK 431

Query: 161 WADRTSADFVCSEI------GSDAAALAYEAFKQAQAKKVDVLI------IDTAGRLHNN 208
           +       ++            +  A   +    A+A + D  +       DT   + + 
Sbjct: 432 FGMVLQDTWLFQGTIAENIAYGNPDATREDILAAAKAAQCDHFVRTLPNGYDTV--IGSE 489

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIM 263
           S L  G  +++ + + +       +L    ++      + ++        G T  I+
Sbjct: 490 SELSQGQQQLLTIARAILADPTILILDEATSSVDTRTEQMIQTAMDRLTQGRTSFII 546


>gi|296104889|ref|YP_003615035.1| ATP-dependent metalloprotease [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059348|gb|ADF64086.1| ATP-dependent metalloprotease [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 644

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 153 DVAGCDEAKEEVGELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 208 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 251

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|302557295|ref|ZP_07309637.1| ABC transporter, ATP-binding protein [Streptomyces griseoflavus
           Tu4000]
 gi|302474913|gb|EFL38006.1| ABC transporter, ATP-binding protein [Streptomyces griseoflavus
           Tu4000]
          Length = 539

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFV 170
            V+ +VG NG GKTT++  L+ ++   G  V +  G    R   +  ++           
Sbjct: 31  AVVALVGPNGAGKTTLLRLLAGELKPHGGSVTVTGGLGVMR-QFVGSVRDETTVRDLLVS 89

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVD 195
            ++     AA A +A + A     D
Sbjct: 90  VAQPRIREAARAVDAAEHAIMTVDD 114


>gi|229513481|ref|ZP_04402945.1| adenylylsulfate kinase [Vibrio cholerae TMA 21]
 gi|229349358|gb|EEO14314.1| adenylylsulfate kinase [Vibrio cholerae TMA 21]
          Length = 215

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + L  ++ AK  +V    ++V +     L             RP V+   G++G GK+TV
Sbjct: 6   DSLRFEQDAKPENVVWHRHEVDKAQRAALKQ----------QRPAVLWFTGLSGAGKSTV 55

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSA 153
            G L  +++  G    L  GD  R  
Sbjct: 56  AGALENRLAALGYHTYLLDGDNVRHG 81


>gi|239827643|ref|YP_002950267.1| arginine/ornithine transporter ATPase [Geobacillus sp. WCH70]
 gi|239807936|gb|ACS25001.1| LAO/AO transport system ATPase [Geobacillus sp. WCH70]
          Length = 366

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 73/222 (32%), Gaps = 37/222 (16%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +  + +    ++++++L  + K      +         GV G GK+T I      + +
Sbjct: 67  ESNAPKHMDIAQQVLNELLPHVGKSIRIGIT---------GVPGAGKSTFIEAFGTFLCE 117

Query: 138 AGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            G +V + A D  +  +          ++ L                         E   
Sbjct: 118 QGHRVAVLAVDPSSSLTGGSILGDKTRMESLARHPRAFIRPSPSGGALGGVHRKTRETMM 177

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A   DV++++T G   +          ++R +             +L  T   + L+
Sbjct: 178 LCEAAGYDVILVETVGVGQSE--------FVVRGM--------VDFFLMLVLTGAGDDLQ 221

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
            ++       T  +++ K DG  +    +     +   +++L
Sbjct: 222 GIKRGIMEL-TDAVVINKADGDNKP-KALAAQKEYNQILHYL 261


>gi|195941393|ref|ZP_03086775.1| ATP-dependent protease LA (lon-1) [Borrelia burgdorferi 80a]
 gi|221217713|ref|ZP_03589181.1| ATP-dependent protease La [Borrelia burgdorferi 72a]
 gi|224533169|ref|ZP_03673769.1| endopeptidase LA [Borrelia burgdorferi WI91-23]
 gi|224533804|ref|ZP_03674392.1| ATP-dependent protease La [Borrelia burgdorferi CA-11.2a]
 gi|225549159|ref|ZP_03770134.1| ATP-dependent protease La [Borrelia burgdorferi 94a]
 gi|225550171|ref|ZP_03771131.1| ATP-dependent protease La [Borrelia burgdorferi 118a]
 gi|226320553|ref|ZP_03796113.1| ATP-dependent protease La [Borrelia burgdorferi 29805]
 gi|221192390|gb|EEE18609.1| ATP-dependent protease La [Borrelia burgdorferi 72a]
 gi|224511896|gb|EEF82297.1| endopeptidase LA [Borrelia burgdorferi WI91-23]
 gi|224513097|gb|EEF83460.1| ATP-dependent protease La [Borrelia burgdorferi CA-11.2a]
 gi|225369283|gb|EEG98736.1| ATP-dependent protease La [Borrelia burgdorferi 118a]
 gi|225370385|gb|EEG99823.1| ATP-dependent protease La [Borrelia burgdorferi 94a]
 gi|226233972|gb|EEH32693.1| ATP-dependent protease La [Borrelia burgdorferi 29805]
 gi|312147784|gb|ADQ30443.1| ATP-dependent protease La [Borrelia burgdorferi JD1]
          Length = 806

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 61/161 (37%), Gaps = 27/161 (16%)

Query: 4   QKVASESLSWI--RKLTK-------GFASTSL--KLKEGITDIISSRRLDDGVREELED- 51
           +++  +   +    +L         G   +S   KLK  +  +       + V +ELE  
Sbjct: 250 ERLEKQQKEFFLKEQLKAIKAELGIGDKKSSDLEKLKTKLKALELKGEPLEVVEKELEKF 309

Query: 52  LLIR-SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-------------LIHKMLM 97
            L+  S     V +  +E L+T+   +D+ +     D+ +              +   ++
Sbjct: 310 SLLETSSAEYIVVRNYLE-LITELPWRDLKINFDKLDLQKSKKILDKTHYGMNEVKDRII 368

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
                     + +  +IL+VG  GVGKT++   ++K +   
Sbjct: 369 EYISVLKLRKTQKGAIILLVGPPGVGKTSIGAAIAKVLRTK 409


>gi|123404524|ref|XP_001302453.1| Adenylate kinase family protein [Trichomonas vaginalis G3]
 gi|121883742|gb|EAX89523.1| Adenylate kinase family protein [Trichomonas vaginalis G3]
          Length = 659

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 34/138 (24%)

Query: 13  WIRKLTKGFASTSLKLK---EGITDIISSRRLDDGVREELEDLLIRSDIGVA-VAQKIVE 68
            I K        + KLK   EGI+ + S          E+E + I   + V  +++  ++
Sbjct: 233 MIDKFVMAVDKANSKLKDIIEGISKLFSDG--------EVETIQIDQALTVPWISETAID 284

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKM-----------LMPLSKPFNWDFSHRPHVILVV 117
            L              +  ++EL+ ++           L  + K F    + +P  ILV 
Sbjct: 285 YLTA-----------DIQAINELLARVPMTCAGGFLQSLEDIGKEFLESRNVKPTRILVC 333

Query: 118 GVNGVGKTTVIGKLSKKM 135
           G    GK+T+  K+S K 
Sbjct: 334 GPPLSGKSTLCAKISYKY 351


>gi|168021283|ref|XP_001763171.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|46917354|dbj|BAD18009.1| plastid division site determinant MinD [Physcomitrella patens]
 gi|162685654|gb|EDQ72048.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 417

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 14/186 (7%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           +++ + L+  ++           V++  G  GVGKTT    L   ++    KV+    D 
Sbjct: 127 QVVPQALLQWNRRPELVGEIPRVVVITSGKGGVGKTTTTANLGMCLARLNFKVVAIDADV 186

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
                 +   +       ++   E+ +    L     +  +    ++L I+   +     
Sbjct: 187 ---GLRNLDLLLGLENRVNYTAMEVLNGECRLDQALIRDKRWTNFELLCIN---KPRYKM 240

Query: 210 ILMAGIG---KMIRVLKRLDPHAPHSVLQVLDATTGQNA--LRQVEMFHAVAGTTGLIMT 264
            L  G      ++  LK+     PH +L  +D   G +A  +  +         T   +T
Sbjct: 241 PLGFGGKALTWLVDALKKRPEGQPHFIL--IDCPAGIDAGFITAITPAKEAILVTTPDIT 298

Query: 265 KM-DGT 269
            + D  
Sbjct: 299 SLRDAD 304


>gi|91788265|ref|YP_549217.1| ATP-dependent helicase HrpA [Polaromonas sp. JS666]
 gi|91697490|gb|ABE44319.1| ATP-dependent helicase HrpA [Polaromonas sp. JS666]
          Length = 1402

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI+V G  G GKTT + K++  M   G   +       +     Q +  A  + A  + 
Sbjct: 46  QVIIVCGETGSGKTTQLPKIALAM---GRGKLNYPAGQGKLIGHTQPRRIAASSVAKRIA 102

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLDPHA 229
            E+ +    +     +       D L  D + +L  + IL+A      ++R    L    
Sbjct: 103 EELKTPLGEVVGYKVR-----FQDRLSRDASVKLMTDGILLAETQTDPLLRAYDTLIIDE 157

Query: 230 PHSVLQVLDATTGQ 243
            H     +D   G 
Sbjct: 158 AHERSLNIDFLLGY 171


>gi|329939862|ref|ZP_08289163.1| ArgK-like transport regulator kinase [Streptomyces
           griseoaurantiacus M045]
 gi|329301432|gb|EGG45327.1| ArgK-like transport regulator kinase [Streptomyces
           griseoaurantiacus M045]
          Length = 318

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 32/218 (14%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              +V +    R      +  ++   S  + +++  L+       +   +V+ + G  GV
Sbjct: 4   VATLVAQAREGRPRAVARLISLVEGASPQLREVMAALA-----PLTGGAYVVGLTGSPGV 58

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIG 175
           GK+T    L      AG ++ + A D        A+      +   A  T          
Sbjct: 59  GKSTSTSALVSAYRRAGKRIGVLAVDPSSPFSGGALLGDRVRMSEHASDTGVYIRSMATR 118

Query: 176 SDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                LA+   +A +   A   +V++++T G   +                 +   A  S
Sbjct: 119 GHLGGLAWAAPQAIRVLDAAGCEVILVETVGVGQSEVE--------------IASQADTS 164

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           V+ +       + ++  +      G    ++ K D   
Sbjct: 165 VVLLAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 199


>gi|312149759|gb|ADQ29830.1| ATP-dependent protease La [Borrelia burgdorferi N40]
          Length = 806

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 61/161 (37%), Gaps = 27/161 (16%)

Query: 4   QKVASESLSWI--RKLTK-------GFASTSL--KLKEGITDIISSRRLDDGVREELED- 51
           +++  +   +    +L         G   +S   KLK  +  +       + V +ELE  
Sbjct: 250 ERLEKQQKEFFLKEQLKAIKAELGIGDKKSSDLEKLKTKLKALELKGEPLEVVEKELEKF 309

Query: 52  LLIR-SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-------------LIHKMLM 97
            L+  S     V +  +E L+T+   +D+ +     D+ +              +   ++
Sbjct: 310 SLLETSSAEYIVVRNYLE-LITELPWRDLKINFDKLDLQKSKKILDKTHYGMNEVKDRII 368

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
                     + +  +IL+VG  GVGKT++   ++K +   
Sbjct: 369 EYISVLKLRKTQKGAIILLVGPPGVGKTSIGAAIAKVLRTK 409


>gi|322432862|ref|YP_004210111.1| type VI secretion ATPase, ClpV1 family [Acidobacterium sp.
           MP5ACTX9]
 gi|321165089|gb|ADW70793.1| type VI secretion ATPase, ClpV1 family [Acidobacterium sp.
           MP5ACTX9]
          Length = 886

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 21/150 (14%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           ++    + E L  +   +D       + ++ +  ++L   SK    D      V ++VG 
Sbjct: 572 ISTVLTLAEHLKKRVIGQD-------HALAAIAQRILT--SKANMDDPVKPIGVFMLVGP 622

Query: 120 NGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           +GVGKT T I  L+  +      ++      F+ A           T +    S  G   
Sbjct: 623 SGVGKTETAIA-LADLLYGGEKNMITINMSEFQEA----------HTVSTLKGSPPGYVG 671

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                   +  + +   V+++D   + H +
Sbjct: 672 YGEGGVLTEAVRRRPYSVVLLDECEKAHPD 701


>gi|218249286|ref|YP_002374776.1| ATP-dependent protease La [Borrelia burgdorferi ZS7]
 gi|226321571|ref|ZP_03797097.1| ATP-dependent protease La [Borrelia burgdorferi Bol26]
 gi|218164474|gb|ACK74535.1| ATP-dependent protease La [Borrelia burgdorferi ZS7]
 gi|226232760|gb|EEH31513.1| ATP-dependent protease La [Borrelia burgdorferi Bol26]
          Length = 806

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 61/161 (37%), Gaps = 27/161 (16%)

Query: 4   QKVASESLSWI--RKLTK-------GFASTSL--KLKEGITDIISSRRLDDGVREELED- 51
           +++  +   +    +L         G   +S   KLK  +  +       + V +ELE  
Sbjct: 250 ERLEKQQKEFFLKEQLKAIKAELGIGDKKSSDLEKLKTKLKALELKGEPLEVVEKELEKF 309

Query: 52  LLIR-SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE-------------LIHKMLM 97
            L+  S     V +  +E L+T+   +D+ +     D+ +              +   ++
Sbjct: 310 SLLETSSAEYIVVRNYLE-LITELPWRDLKINFDKLDLQKSKKILDKTHYGMNEVKDRII 368

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
                     + +  +IL+VG  GVGKT++   ++K +   
Sbjct: 369 EYISVLKLRKTQKGAIILLVGPPGVGKTSIGAAIAKVLRTK 409


>gi|167039684|ref|YP_001662669.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|300915067|ref|ZP_07132382.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307724990|ref|YP_003904741.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
 gi|310943101|sp|B0K657|FTSH2_THEPX RecName: Full=ATP-dependent zinc metalloprotease FtsH 2
 gi|166853924|gb|ABY92333.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X514]
 gi|300888791|gb|EFK83938.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X561]
 gi|307582051|gb|ADN55450.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter sp. X513]
          Length = 510

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 21/187 (11%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            ++      T    KDV+    + D  ++I   +    K +N   +  P  IL  G  G 
Sbjct: 70  TKEDTSHRKTNITFKDVAGLDEVIDELKVIIDFMTNTEK-YNKMGAKIPKGILFYGPPGT 128

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKT     L+  ++       ++A  +                  +       S   AL 
Sbjct: 129 GKT----LLATALAGETNSTFISASGS---------------EFVEKYVGVGASRIRALF 169

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +A K A +    +  ID  G   N          + ++L  +D    +  + V+ AT  
Sbjct: 170 AKAKKSAPSIIF-IDEIDAVGTKRNTDNNSEKDQTLNQLLVEMDGFNSNEGIIVIGATNR 228

Query: 243 QNALRQV 249
            + L + 
Sbjct: 229 IDMLDEA 235


>gi|53722081|ref|YP_111066.1| partition protein [Burkholderia pseudomallei K96243]
 gi|134288738|ref|YP_001111162.1| gp12, partition protein [Burkholderia phage phiE12-2]
 gi|52212495|emb|CAH38521.1| putative partition protein [Burkholderia pseudomallei K96243]
 gi|134132123|gb|ABO60798.1| gp12, partition protein [Burkholderia phage phiE12-2]
          Length = 218

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 114 ILVVG--VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           IL VG    GVGK+T   +L+  ++  G +V L  GD+ R++           T    + 
Sbjct: 3   ILAVGNPKGGVGKSTTAVQLAIGLALDGARVWLVDGDSQRTS--LSAITARAHTGRPLIA 60

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
           +   +D  +L  +  +Q    + D ++ID  GR 
Sbjct: 61  ASAYADGPSLRAQVLQQC--VQFDQVVIDVGGRD 92


>gi|154243669|ref|YP_001409242.1| cobyrinic acid ac-diamide synthase [Xanthobacter autotrophicus Py2]
 gi|154162791|gb|ABS70006.1| Cobyrinic acid ac-diamide synthase [Xanthobacter autotrophicus Py2]
          Length = 387

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 91  LIHKMLMPLSKPFNWDFSHRP--HVILVVGVN---GVGKTTVIGKLSKKMSDAGLKVMLA 145
            +   L   SK   +    R   H  ++  VN   G GKTT    L++ ++  G      
Sbjct: 80  ELRVTLEEGSKGKKYVPHRREAEHCQVMAVVNFKGGSGKTTTAAHLAQYLALHG------ 133

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVL 197
               +R  A+D L   A  T+      E         Y A +  + ++   DV+
Sbjct: 134 ----YRVLAVD-LDPQASLTALHGYQPEYDIQPNETMYAAVRYDENRRPLKDVI 182


>gi|167036973|ref|YP_001664551.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115391|ref|YP_004185550.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855807|gb|ABY94215.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928482|gb|ADV79167.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 510

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 21/187 (11%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            ++      T    KDV+    + D  ++I   +    K +N   +  P  IL  G  G 
Sbjct: 70  TKEDTSHRKTNITFKDVAGLDEVIDELKVIIDFMTNTEK-YNKMGAKIPKGILFYGPPGT 128

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKT     L+  ++       ++A  +                  +       S   AL 
Sbjct: 129 GKT----LLATALAGETNSTFISASGS---------------EFVEKYVGVGASRIRALF 169

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +A K A +    +  ID  G   N          + ++L  +D    +  + V+ AT  
Sbjct: 170 AKAKKSAPSIIF-IDEIDAVGTKRNTDNNSEKDQTLNQLLVEMDGFNSNEGIIVIGATNR 228

Query: 243 QNALRQV 249
            + L + 
Sbjct: 229 IDMLDEA 235


>gi|328793565|ref|XP_392703.4| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog isoform
           1 [Apis mellifera]
          Length = 734

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 23/183 (12%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           + + +  + +  ++  L  P  +    +  P  +L+VG  G GKT     L++ ++    
Sbjct: 284 KGVAEAKQELSDIVEFLKNPEKFSALGAKLPKGVLLVGPPGTGKT----LLARAVAGE-- 337

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
               A    F +A  +  +I            +       L   A ++A A    +  ID
Sbjct: 338 ----AGVPFFHAAGPEFEEIL---------VGQGARRMRDLFKAAKEKAPAVIF-IDEID 383

Query: 201 TAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           + G    NS L       + ++L  +D    +  + VL AT  ++ L +  M        
Sbjct: 384 SVGAKRTNSALHPYANQTVNQLLTEMDGFLQNEGVIVLGATNRRDDLDKALMRPGRFDVE 443

Query: 260 GLI 262
            ++
Sbjct: 444 VVV 446


>gi|283788184|ref|YP_003368049.1| cell division protein [Citrobacter rodentium ICC168]
 gi|282951638|emb|CBG91338.1| cell division protein [Citrobacter rodentium ICC168]
          Length = 643

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 153 DVAGCDEAKEEVGELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 208 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 251

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|257866904|ref|ZP_05646557.1| ABC transporter [Enterococcus casseliflavus EC30]
 gi|257872579|ref|ZP_05652232.1| ABC transporter [Enterococcus casseliflavus EC10]
 gi|257800862|gb|EEV29890.1| ABC transporter [Enterococcus casseliflavus EC30]
 gi|257806743|gb|EEV35565.1| ABC transporter [Enterococcus casseliflavus EC10]
          Length = 594

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 21/177 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAIDQLKI 160
           N +FS +P   + +VG  G GKTT+I  L +     G K++L   D  +F + A+   K 
Sbjct: 374 NVEFSVKPKQTVAIVGPTGAGKTTMINLLMRFYPLNGGKILLDDQDMMSFSAPAVR--KK 431

Query: 161 WADRTSADFVCSEI------GSDAAALAYEAFKQAQAKKVDVLI------IDTAGRLHNN 208
           +       ++            +  A   +    A+A + D  +       DT   + + 
Sbjct: 432 FGMVLQDTWLFQGTIAENIAYGNPDATREDILAAAKAAQCDHFVRTLPNGYDTV--IGSE 489

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA--GTTGLIM 263
           S L  G  +++ + + +       +L    ++      + ++        G T  I+
Sbjct: 490 SELSQGQQQLLTIARAILADPTILILDEATSSVDTRTEQMIQTAMDRLTQGRTSFII 546


>gi|224370325|ref|YP_002604489.1| ArgK [Desulfobacterium autotrophicum HRM2]
 gi|223693042|gb|ACN16325.1| ArgK [Desulfobacterium autotrophicum HRM2]
          Length = 327

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + S++      + ++ K+L    K      +         GV GVGK+T +  L   + +
Sbjct: 32  ESSLEAHRRLAARMMEKLLPHTGKAVRLGIT---------GVPGVGKSTFVENLGLFLVE 82

Query: 138 AGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            GL+V + A D  + RS          ++QL                    AA   E   
Sbjct: 83  KGLRVAVLAVDPSSSRSGGSILGDKTRMEQLAAHPSTFIRPSPSGRTLGGVAAKTRETLL 142

Query: 188 QAQAKKVDVLIIDTAGRLHNNSI 210
             +A   DV++++T G   + + 
Sbjct: 143 VCEAAGFDVVLVETVGVGQSETS 165


>gi|189219273|ref|YP_001939914.1| ATPase of the AAA+ class, RuBisCo-expression protein CbbX
           [Methylacidiphilum infernorum V4]
 gi|189186131|gb|ACD83316.1| ATPase of the AAA+ class, RuBisCo-expression protein CbbX
           [Methylacidiphilum infernorum V4]
          Length = 313

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKT 125
           +EE+L     + + ++ V   V E+   +++   +      +  P + +   G  G GKT
Sbjct: 32  IEEVLEDLERELIGLKPVKQRVKEIASFLMVQRLREIAGVVTEPPSLHMSFTGPPGTGKT 91

Query: 126 TVIGKLSKKMSDAGL 140
           TV  K+ K +   G 
Sbjct: 92  TVAMKMGKILHRLGY 106


>gi|328952214|ref|YP_004369548.1| LAO/AO transport system ATPase [Desulfobacca acetoxidans DSM 11109]
 gi|328452538|gb|AEB08367.1| LAO/AO transport system ATPase [Desulfobacca acetoxidans DSM 11109]
          Length = 320

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 75/216 (34%), Gaps = 36/216 (16%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
             I++++          + R L +      ++L  L     + ++ R H+I + G  GVG
Sbjct: 1   MDIIQQVRQGDIRATARLMRDLDEGDPAAREILKGL-----YQYTGRAHIIGITGSPGVG 55

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           K+T+  ++ + +   GL V + A D   ++      I  DR       ++ G    +LA 
Sbjct: 56  KSTLTDRMIQLLRQQGLTVGVVAVDP--TSPFSGGAILGDRIRMQRHATDEGVFIRSLAT 113

Query: 184 EA------------FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                              A   D ++++T G   +                     A H
Sbjct: 114 RGHFGGLTASSRAVVNVLDAMGKDFILVETVGVGQDEVE---------------IASAAH 158

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           + + V     G + ++ ++      G    ++ K D
Sbjct: 159 TTIVVTVPGMG-DDIQAIKAGILEIG-DLFVINKAD 192


>gi|226939851|ref|YP_002794924.1| Anion-transporting ATPase family protein [Laribacter hongkongensis
           HLHK9]
 gi|226714777|gb|ACO73915.1| Anion-transporting ATPase family protein [Laribacter hongkongensis
           HLHK9]
          Length = 433

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           + PL +    +      VI+ +  +GVGKTTV   ++  ++  G KV+L+  D    AA 
Sbjct: 241 MGPLVEQIARNGRG---VIMTMSKSGVGKTTVAAAIAVNLARNGHKVVLSTTD---PAAH 294

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
               +            +  ++ A    E   +  ++      +D++G       L +  
Sbjct: 295 VASTLDGRIDGLTVTRIDPAAEVAQYTAEVLGKTASQ------LDSSGLAMLEEDLRSPC 348

Query: 216 GKMIRV 221
            + I V
Sbjct: 349 TEEIAV 354


>gi|218707121|ref|YP_002414640.1| Arsenical pump-driving ATPase [Escherichia coli UMN026]
 gi|218434218|emb|CAR15136.1| Arsenical pump-driving ATPase [Escherichia coli UMN026]
          Length = 591

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ +++D G  V L   D    AA     +     +       
Sbjct: 338 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAAHINTTLNGTLNNLQVSRIN 394

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    K  D+   D AG+      L +   + I V + 
Sbjct: 395 PQEETERYRQHVLE---TKGKDL---DEAGKRLLEEDLRSPCTEEIAVFQA 439


>gi|189502336|ref|YP_001958053.1| hypothetical protein Aasi_0966 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497777|gb|ACE06324.1| hypothetical protein Aasi_0966 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 2145

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 18/127 (14%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
              K++  +  + ++      +++ LED  I +     + +++      KR  K  S Q 
Sbjct: 625 LRDKMQRSLKVLTAA-----SIKKTLEDSNIDA-----LTKQL-----EKRSIKQFS-QL 668

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKV 142
             Y     +   L    K            + VV G  GVGK+T++ +      D  L +
Sbjct: 669 HNYIAQAKLTTYLAREDKQQELSQKLNKDGVCVVYGHGGVGKSTLVAQYGHSQKDKQL-I 727

Query: 143 MLAAGDT 149
                +T
Sbjct: 728 WWMQAET 734


>gi|156935700|ref|YP_001439616.1| ATP-dependent metalloprotease [Cronobacter sakazakii ATCC BAA-894]
 gi|156533954|gb|ABU78780.1| hypothetical protein ESA_03569 [Cronobacter sakazakii ATCC BAA-894]
          Length = 644

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 153 DVAGCDEAKEEVGELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 208 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 251

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|149437053|ref|XP_001516067.1| PREDICTED: similar to 6-phosphofructo-2-kinase [Ornithorhynchus
           anatinus]
          Length = 579

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
             ++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+   
Sbjct: 96  QLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVRHY 148


>gi|119715418|ref|YP_922383.1| ABC transporter related [Nocardioides sp. JS614]
 gi|119536079|gb|ABL80696.1| amino acid/amide ABC transporter ATP-binding protein 2, HAAT family
           [Nocardioides sp. JS614]
          Length = 236

 Score = 38.3 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 5/81 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V  ++G NG GKTT++  L++        V     D  R  A       +      +V  
Sbjct: 34  VFAILGANGAGKTTLLATLARLNPLMAGTVTFKGTDISRMRAYQ-----SAGLGVGYVPQ 88

Query: 173 EIGSDAAALAYEAFKQAQAKK 193
           E G        +  +      
Sbjct: 89  ERGVFPDLTVMDNLRVGGMFG 109


>gi|319427312|gb|ADV55386.1| ATP-dependent metalloprotease FtsH [Shewanella putrefaciens 200]
          Length = 652

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   K    DV+      +  + +   L   +K F       P  +L+VG  G GK
Sbjct: 145 KLMSEDQIKTTFADVAGCDEAKEEVKELVDYLRDPTK-FQKLGGRIPTGVLMVGPPGTGK 203

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 204 T----LLAKAIAGESKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 244

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 245 AKKSAPCIIF-IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATN 303

Query: 242 GQNALRQV 249
             + L   
Sbjct: 304 RPDVLDSA 311


>gi|302390460|ref|YP_003826281.1| twitching motility protein [Thermosediminibacter oceani DSM 16646]
 gi|302201088|gb|ADL08658.1| twitching motility protein [Thermosediminibacter oceani DSM 16646]
          Length = 342

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIG 129
           S+   L  V ++IH +      P   + + +PH +++V G  G GKTT + 
Sbjct: 91  SIGAALRLVGDVIHSLDELGLPPVVGELADQPHGLVLVTGPTGSGKTTTLA 141


>gi|262369450|ref|ZP_06062778.1| cell division protein [Acinetobacter johnsonii SH046]
 gi|262315518|gb|EEY96557.1| cell division protein [Acinetobacter johnsonii SH046]
          Length = 630

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 25/168 (14%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  + + +++  L  P  +    +  P  +L+VG  G GKT     L+K ++        
Sbjct: 164 EAKQEVVEIVDFLKDPSKFKRLGATIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 219

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           +   +                  +       S    +  +A + A      +  ID  GR
Sbjct: 220 SISGS---------------DFVEMFVGVGASRVRDMFEQAKRHAPCIIF-IDEIDAVGR 263

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                           + ++L  +D    +  + V+ AT   + L + 
Sbjct: 264 HRGSGTGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRADVLDKA 311


>gi|260662372|ref|ZP_05863267.1| guanylate kinase [Lactobacillus fermentum 28-3-CHN]
 gi|260553063|gb|EEX26006.1| guanylate kinase [Lactobacillus fermentum 28-3-CHN]
          Length = 194

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 12/115 (10%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTSAD- 168
            V ++ G  G GKTTV    +K + D      +    T   R   +D +  + +  ++  
Sbjct: 7   PVFVITGAAGSGKTTV----AKYLKDTYQMAKVITHTTRAPRPGEVDGVDYYFESPTSIK 62

Query: 169 ----FVCSEIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKM 218
                   E        +YE  +   AK   DV+++DTAG L  +  L      +
Sbjct: 63  DRHLLERVEYDGHLYGSSYEGLEAGWAKHPADVIVLDTAGALTYHQALGDQAVVI 117


>gi|302553052|ref|ZP_07305394.1| ion-transporting ATPase [Streptomyces viridochromogenes DSM 40736]
 gi|302470670|gb|EFL33763.1| ion-transporting ATPase [Streptomyces viridochromogenes DSM 40736]
          Length = 467

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA----IDQLKIWA 162
              +  +++  G  GVGKTT    L  + ++ G KV++   D  R  A    ID L    
Sbjct: 29  ADPKTRIVVCCGSGGVGKTTTAAALGLRAAERGRKVVVLTIDPARRLAQSMGIDSLDNTP 88

Query: 163 DRT-SADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
            R    D                 F +      D
Sbjct: 89  RRVKGIDDSAGGELHAMMLDMKRTFDEIVEAHAD 122


>gi|254562641|ref|YP_003069736.1| gluconokinase; gluconate transport, GNT I system [Methylobacterium
           extorquens DM4]
 gi|254269919|emb|CAX25897.1| gluconokinase; gluconate transport, GNT I system [Methylobacterium
           extorquens DM4]
          Length = 180

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                S  P V++V+GV+G GK+TV   L++++         A GD F +
Sbjct: 1   MTVPRSPAPTVLVVMGVSGSGKSTVAALLAERLGW-----TFADGDDFHT 45


>gi|224418139|ref|ZP_03656145.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491]
 gi|253827466|ref|ZP_04870351.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491]
 gi|313141674|ref|ZP_07803867.1| atpase-ATP-dependent zn protease [Helicobacter canadensis MIT
           98-5491]
 gi|253510872|gb|EES89531.1| ATP-dependent Zn protease [Helicobacter canadensis MIT 98-5491]
 gi|313130705|gb|EFR48322.1| atpase-ATP-dependent zn protease [Helicobacter canadensis MIT
           98-5491]
          Length = 555

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 22/167 (13%)

Query: 85  LYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +  E + +++  L  P  +       P  +L+VG  GVGKT     ++K ++      
Sbjct: 162 ITEAKEELKEIVDYLKSPKKYQDFGVKLPKGVLLVGPPGVGKT----LIAKALAGEAKVP 217

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
                     A+  Q+ +         + ++   +A A+ +          +D   ID  
Sbjct: 218 FYYQSG----ASFVQIYVGMGAKRVHDLFTKAKLNAPAIIF----------IDE--IDAV 261

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           G+             + ++L  +D     + + V+ AT    ++ + 
Sbjct: 262 GKARGGMRNEERETTLNQLLTEMDGFEDSNGIIVIGATNNIESMDEA 308


>gi|126175446|ref|YP_001051595.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS155]
 gi|153001797|ref|YP_001367478.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS185]
 gi|160876530|ref|YP_001555846.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS195]
 gi|125998651|gb|ABN62726.1| membrane protease FtsH catalytic subunit [Shewanella baltica OS155]
 gi|151366415|gb|ABS09415.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS185]
 gi|160862052|gb|ABX50586.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS195]
          Length = 657

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   K    DV+      +  + +   L   +K F       P  +L+VG  G GK
Sbjct: 150 KLMSEDQIKTTFADVAGCDEAKEEVKELVDYLRDPTK-FQKLGGRIPTGVLMVGPPGTGK 208

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 209 T----LLAKAIAGESKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 249

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 250 AKKSAPCIIF-IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATN 308

Query: 242 GQNALRQV 249
             + L   
Sbjct: 309 RPDVLDSA 316


>gi|317504468|ref|ZP_07962446.1| phosphoribulokinase [Prevotella salivae DSM 15606]
 gi|315664411|gb|EFV04100.1| phosphoribulokinase [Prevotella salivae DSM 15606]
          Length = 553

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-HKMLMPLSKPFNWDFSHRPHVILV 116
           +GV       E +        +     L +VSE +  K +  ++            ++L+
Sbjct: 243 LGVRTVGDFNEAVT-------LGYATDLINVSEALQEKKIAQIADEI--ASRKGVKLVLL 293

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            G +  GKTT   +LS ++   GLK +  + D +
Sbjct: 294 AGPSSSGKTTTCKRLSVQLLANGLKPLQISLDDY 327


>gi|313681785|ref|YP_004059523.1| ATPase-like, para/mind [Sulfuricurvum kujiense DSM 16994]
 gi|313154645|gb|ADR33323.1| ATPase-like, ParA/MinD [Sulfuricurvum kujiense DSM 16994]
          Length = 387

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 34/237 (14%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +   +  +  EEL      + V          E         SK  N     +  +++  
Sbjct: 51  VAHQITLEATEELKRAGAGEVVVNITAPKMPRE-------SSSKGKNIAPQVKNFIMVSS 103

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G  GVGK+T    L+  ++  G KV L   D +                 + +  E    
Sbjct: 104 GKGGVGKSTTSVNLAVALAMQGKKVGLLDADIYGPN-------IPRMLGVEGIKPE---- 152

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKR--LDPHAPHSVL 234
              +        +A  ++++   + G L      L+     +++ +++   D        
Sbjct: 153 ---VVGNKVLPIKAYGIEMM---SMGSLMEEGQSLIWRGAMIMKAIEQFLRDIMWSDLDC 206

Query: 235 QVLDATTGQNA----LRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            V+D   G       L Q          T   M  +D + R    + +     IP+ 
Sbjct: 207 LVIDMPPGTGDAQLTLAQSVPVTVGVTVTTPQMVSLDDSRR---SLDMFKKLHIPIA 260


>gi|307301410|ref|ZP_07581170.1| plasmid partitioning protein RepA [Sinorhizobium meliloti BL225C]
 gi|306903467|gb|EFN34055.1| plasmid partitioning protein RepA [Sinorhizobium meliloti BL225C]
          Length = 398

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 92  IHKMLMPLSKPFNWDFSHRP-------HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           I ++L   SK   +    RP        V+   G  G GKTT    L++ ++  G +V+ 
Sbjct: 93  IRRVLDEGSKTGKYIPHRRPGEKLQVVSVMNFKG--GSGKTTTSAHLAQYLALRGYRVLA 150

Query: 145 AAGD 148
              D
Sbjct: 151 IDLD 154


>gi|300172936|ref|YP_003772102.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887315|emb|CBL91283.1| ATP-dependent Clp protease ATP-binding subunit clpE [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 687

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 21/146 (14%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGV 122
           Q++  +L      +D++VQ     V++ I +  + L+K      S RP    L VG  GV
Sbjct: 384 QELDNQLAQHVVGQDIAVQ----TVAKAIRRNRIGLTK------SGRPIGSFLFVGPTGV 433

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKT +  +L+K     G K  L   D          +       +  + +  G      A
Sbjct: 434 GKTELAKQLAK--EMFGSKDALIRFDMS--------EYMEKHAVSKMIGAPAGYVGYEEA 483

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +  +Q +     +++ID   + H +
Sbjct: 484 GQLTEQVRRHPYSLVLIDEVEKAHPD 509


>gi|296159287|ref|ZP_06842113.1| type VI secretion ATPase, ClpV1 family [Burkholderia sp. Ch1-1]
 gi|295890546|gb|EFG70338.1| type VI secretion ATPase, ClpV1 family [Burkholderia sp. Ch1-1]
          Length = 916

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 69/198 (34%), Gaps = 39/198 (19%)

Query: 37  SSRRLDDGVREELEDLL--IRSD---IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL 91
              R      ++LE  L  ++ D   +   V++ IV E+++      + V R++ D    
Sbjct: 524 GEVRASPDSLKDLERALTQLQGDAPLVFPEVSEAIVAEVVSDWTG--IPVGRMVTDEVAA 581

Query: 92  IHKM--------------------LMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGK 130
           +  +                     +  ++    D      V L+ G +GVGKT T +  
Sbjct: 582 VQSLPATLEARVIGQPDALRQIGERVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALA- 640

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ +      ++         +   +    +    A      +G     L  EA ++  
Sbjct: 641 LAEALYGGEQNLITVNM-----SEYQEAHTVSGLKGAP--PGYVGYGEGGLLTEAVRR-- 691

Query: 191 AKKVDVLIIDTAGRLHNN 208
            +   V+++D   + H +
Sbjct: 692 -RPYSVVLLDEIEKAHRD 708


>gi|307727732|ref|YP_003910945.1| type VI secretion ATPase, ClpV1 family [Burkholderia sp. CCGE1003]
 gi|307588257|gb|ADN61654.1| type VI secretion ATPase, ClpV1 family [Burkholderia sp. CCGE1003]
          Length = 891

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 614 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKMVTINMSEYQEAHSVSGLK- 671

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 672 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 721

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 722 TMDDAEGREIDFRNTLIILTSNVGSQAVMQA 752


>gi|260910547|ref|ZP_05917215.1| phosphoribulokinase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635389|gb|EEX53411.1| phosphoribulokinase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 553

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 103 FNWDFSHRPHV--ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
              + + RP V  +L+ G +  GKTT   +LS ++   G+K +  + D +
Sbjct: 278 IADEIAARPEVRMVLLAGPSSSGKTTTCKRLSVQLLANGIKPVQISLDDY 327


>gi|256750615|ref|ZP_05491501.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750455|gb|EEU63473.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 510

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 21/187 (11%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            ++      T    KDV+    + D  ++I   +    K +N   +  P  IL  G  G 
Sbjct: 70  TKEDTSHRKTNITFKDVAGLDEVIDELKVIIDFMTNTEK-YNKMGAKIPKGILFYGPPGT 128

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKT     L+  ++       ++A  +                  +       S   AL 
Sbjct: 129 GKT----LLATALAGETNSTFISASGS---------------EFVEKYVGVGASRIRALF 169

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +A K A +    +  ID  G   N          + ++L  +D    +  + V+ AT  
Sbjct: 170 AKAKKSAPSIIF-IDEIDAVGTKRNTDNNSEKDQTLNQLLVEMDGFNSNEGIIVIGATNR 228

Query: 243 QNALRQV 249
            + L + 
Sbjct: 229 IDMLDEA 235


>gi|228474487|ref|ZP_04059221.1| ATP-binding ABC transporter protein [Staphylococcus hominis SK119]
 gi|228271571|gb|EEK12931.1| ATP-binding ABC transporter protein [Staphylococcus hominis SK119]
          Length = 645

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           D +    +  +  L      P++ P N + +   H I ++G NGVGKTT+I  ++ +   
Sbjct: 323 DRNTGNDVMHIRNLEVGYQSPITAPINIEVTKGDH-IAIIGPNGVGKTTLIKTIANRQKA 381

Query: 138 AG 139
            G
Sbjct: 382 LG 383


>gi|16263797|ref|NP_436589.1| replication protein A [Sinorhizobium meliloti 1021]
 gi|307316865|ref|ZP_07596307.1| plasmid partitioning protein RepA [Sinorhizobium meliloti AK83]
 gi|15139921|emb|CAC48449.1| probable replication protein A [Sinorhizobium meliloti 1021]
 gi|306897487|gb|EFN28231.1| plasmid partitioning protein RepA [Sinorhizobium meliloti AK83]
          Length = 398

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 92  IHKMLMPLSKPFNWDFSHRP-------HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           I ++L   SK   +    RP        V+   G  G GKTT    L++ ++  G +V+ 
Sbjct: 93  IRRVLDEGSKTGKYIPHRRPGEKLQVVSVMNFKG--GSGKTTTSAHLAQYLALRGYRVLA 150

Query: 145 AAGD 148
              D
Sbjct: 151 IDLD 154


>gi|326521912|dbj|BAK04084.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 969

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           KDV+    + D  + +  ML+      N    H    I +VG  G+GKTT + K + 
Sbjct: 162 KDVTELVGIEDTRDELINMLIGGDDWLN----HPLKTISIVGFGGLGKTT-LAKAAY 213


>gi|325107587|ref|YP_004268655.1| arsenite efflux ATP-binding protein ArsA [Planctomyces brasiliensis
           DSM 5305]
 gi|324967855|gb|ADY58633.1| arsenite efflux ATP-binding protein ArsA [Planctomyces brasiliensis
           DSM 5305]
          Length = 598

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 10/137 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           VI+ +G  GVGKTT+   ++ ++++AG  V L+  D    AA     +    + ++   +
Sbjct: 332 VIMTMGKGGVGKTTLAAAIAVRLAEAGYPVELSTTD---PAAHLADALADADSLSNLKIT 388

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL---MAGIGKMIRVLKRLDPHA 229
            I   A   AY A   A + K     +D AGR      L         + R   +    A
Sbjct: 389 RIDPKAEVAAYTAEVLATSGKN----LDAAGRALLEEDLRSPCTEEIAVFRAFAKAVASA 444

Query: 230 PHSVLQVLDATTGQNAL 246
               + +  A TG   L
Sbjct: 445 EERYVVLDTAPTGHTIL 461


>gi|301058309|ref|ZP_07199342.1| molybdopterin-guanine dinucleotide biosynthesis protein B [delta
           proteobacterium NaphS2]
 gi|300447545|gb|EFK11277.1| molybdopterin-guanine dinucleotide biosynthesis protein B [delta
           proteobacterium NaphS2]
          Length = 169

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           ++P +I VVG +G GKTT++ KL  +M+  G +V     D 
Sbjct: 5   NQPPIISVVGYSGAGKTTLMEKLIHEMTRRGYRVGSIKHDV 45


>gi|300193097|pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
           Conformation
          Length = 181

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           SK F+  F ++   IL+VG++G GKTTV+ KL  
Sbjct: 6   SKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKL 39


>gi|300706642|ref|XP_002995570.1| hypothetical protein NCER_101497 [Nosema ceranae BRL01]
 gi|239604729|gb|EEQ81899.1| hypothetical protein NCER_101497 [Nosema ceranae BRL01]
          Length = 420

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 17/118 (14%)

Query: 18  TKGFASTSLKLKEGITD---IISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           + GF + S K   G+       SS  +D             S+I   + ++I  E+L   
Sbjct: 96  SSGFKTASEKQLTGLKQNDTKKSSGEIDP-----------ESNIENNILERIKSEILENV 144

Query: 75  YAKDVSVQRVLYDVSELIHKM-LMPLSKP-FNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                     L +V ++I+++ L P+ +P         P  +++ G  G GK T+IGK
Sbjct: 145 NNITWDDVVGLDNVKKIINEIVLWPMQRPDLFTGLRGPPKGLMLFGPPGTGK-TMIGK 201


>gi|196047679|ref|ZP_03114884.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|196021504|gb|EDX60206.1| conserved hypothetical protein [Bacillus cereus 03BB108]
          Length = 491

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 69/203 (33%), Gaps = 45/203 (22%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            ++ +E             +  L  + E I + L      F  D +++ ++  + G  G 
Sbjct: 178 TERFIEN------------KYFLTQLQESIKEEL------FKLDSNNQKNLFAIEGAAGT 219

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKT ++  ++K+  D G +V +                     +            +   
Sbjct: 220 GKTLLVYDIAKQYKDHGKEVAIL---------------HCGNLNNGHDTLNDNYSWSIYP 264

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            + +K   + + DV++ID   R++               L+++  +A    +  + +   
Sbjct: 265 VKGYKTIFSGQFDVIVIDEIQRIYKEQ------------LEKIVKYAIKEQITCVFSFDP 312

Query: 243 QNALRQVEMFHAVAGTTGLIMTK 265
           +  L   E+   + G    I+ K
Sbjct: 313 KQCLSISEINRNIPGYLDTIVDK 335


>gi|154150428|ref|YP_001404046.1| cobyrinic acid a,c-diamide synthase [Candidatus Methanoregula
           boonei 6A8]
 gi|153998980|gb|ABS55403.1| Cobyrinic acid a,c-diamide synthase [Methanoregula boonei 6A8]
          Length = 281

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 106 DFSHRPHVILVV--GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           D  H+   I VV  G  GVGKTT+   LS   +  G +V+    D  ++ A
Sbjct: 4   DARHKERGIRVVITGKGGVGKTTLAALLSHLFAQDGKRVLAIDSDPQQNLA 54


>gi|153826369|ref|ZP_01979036.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MZO-2]
 gi|149739847|gb|EDM54038.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MZO-2]
          Length = 363

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   +KI E L      ++ + + +   V     ++    +
Sbjct: 46  NDIIREEIKDVLPKKESAALPTPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDT 105

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 106 TSEGVELGKSN--ILLIGPTGSGKTLLAETLARLL 138


>gi|157130512|ref|XP_001661906.1| hypothetical protein AaeL_AAEL011782 [Aedes aegypti]
 gi|108871890|gb|EAT36115.1| conserved hypothetical protein [Aedes aegypti]
          Length = 304

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +K          +  LV+G  G GKTT   K+ + +     KV +   D
Sbjct: 3   NKVVTLKTQTPLYGQLVIGPPGSGKTTYCAKMKQFLEKLERKVTVVNLD 51


>gi|47209198|emb|CAF91432.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 476

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           ++ P VI+++G+   GKT +  KL++ ++  G+   +     +R  A+   K +
Sbjct: 2   TNSPTVIVMIGLPARGKTYMSKKLTRYLNWIGVPTKVFNLGVYRREAVGTYKSY 55


>gi|47218241|emb|CAF96278.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 610

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           F++ P VI++VG+   GKT +  KL++ ++  G+   +     +R  A+
Sbjct: 33  FANPPTVIVMVGLPARGKTYISKKLTRYLNWIGMPTKVFNVGEYRREAV 81


>gi|186682012|ref|YP_001865208.1| ATPase [Nostoc punctiforme PCC 73102]
 gi|186464464|gb|ACC80265.1| AAA ATPase, central domain protein [Nostoc punctiforme PCC 73102]
          Length = 503

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 24/132 (18%)

Query: 26  LKLKEGITDIISSRRLDDGVR-------EELEDLLIRS----------DIGVAVAQKIVE 68
            +L +   + +S + LDD V        E +  +L ++          D+ + + +K  +
Sbjct: 152 ERLLQSTGNSLSGKVLDDLVLSCQGLSMERIRRVLAKAIATHGELQPEDVDLVLEEK-RQ 210

Query: 69  ELLTKRYAKDVSVQRVLYDVSEL--IHKMLMPLSKPFNWDFSH----RPHVILVVGVNGV 122
            +   +          + D+  L  +   L+     F           P  +++VG+ G 
Sbjct: 211 TIRQTQILDFYPATEQISDIGGLDNLKDWLIRRGGSFTDKARQYGLPHPRGLMLVGIQGT 270

Query: 123 GKTTVIGKLSKK 134
           GK+     ++  
Sbjct: 271 GKSLTAKAIAHH 282


>gi|312082640|ref|XP_003143528.1| sex determination protein MOG-1 [Loa loa]
 gi|307761309|gb|EFO20543.1| sex determination protein MOG-1 [Loa loa]
          Length = 936

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
              K +  QR    V  +  KML  ++            V+++VG  G GKTT   +L++
Sbjct: 232 ALKKSIKEQREYLPVFAVRQKMLSVIAD---------NSVVIIVGETGSGKTT---QLAQ 279

Query: 134 KMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTSAD 168
            + + G       G T   R AA+   K  A+    +
Sbjct: 280 YLLEDGYGNFGLIGCTQPRRVAAMSVAKRVAEEMDVE 316


>gi|295097664|emb|CBK86754.1| membrane protease FtsH catalytic subunit [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 644

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 153 DVAGCDEAKEEVGELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 208 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 251

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|293407108|ref|ZP_06651032.1| arsenical pump-driving ATPase [Escherichia coli FVEC1412]
 gi|300898760|ref|ZP_07117067.1| arsenite-transporting ATPase [Escherichia coli MS 198-1]
 gi|284923516|emb|CBG36611.1| arsenical pump-driving ATPase [Escherichia coli 042]
 gi|291425919|gb|EFE98953.1| arsenical pump-driving ATPase [Escherichia coli FVEC1412]
 gi|300357596|gb|EFJ73466.1| arsenite-transporting ATPase [Escherichia coli MS 198-1]
          Length = 583

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+++G  GVGKTT+   ++ +++D G  V L   D    AA     +     +       
Sbjct: 330 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAAHINTTLNGTLNNLQVSRIN 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +         +    K  D+   D AG+      L +   + I V + 
Sbjct: 387 PQEETERYRQHVLE---TKGKDL---DEAGKRLLEEDLRSPCTEEIAVFQA 431


>gi|260892953|ref|YP_003239050.1| putative serine protein kinase, PrkA [Ammonifex degensii KC4]
 gi|260865094|gb|ACX52200.1| putative serine protein kinase, PrkA [Ammonifex degensii KC4]
          Length = 626

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           VEE+  +R  + +   R L+ + E+I K++    +P       R  ++L+VG  G GK+T
Sbjct: 53  VEEVNGRR--RYLFFTRELFGLEEVIEKLVEEYLRPAAEGLDVRRRILLLVGPVGGGKST 110

Query: 127 VIGKL 131
           ++  L
Sbjct: 111 LVNLL 115


>gi|261342621|ref|ZP_05970479.1| ATP-dependent metallopeptidase HflB [Enterobacter cancerogenus ATCC
           35316]
 gi|288315269|gb|EFC54207.1| ATP-dependent metallopeptidase HflB [Enterobacter cancerogenus ATCC
           35316]
          Length = 644

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 153 DVAGCDEAKEEVGELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 208 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 251

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|225448187|ref|XP_002265276.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1696

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 20/139 (14%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           ++L  +  +  +  +  +Y   E+  +M+  L         ++  VI +VG+ G GKTT 
Sbjct: 156 KKLPQRLPSTSLVDECCVYGRDEIKEEMIKGLLSDNT--GRNKIDVISIVGMGGAGKTT- 212

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ + + G                  LK W   +    +     S    +   A  
Sbjct: 213 ---LAQLLYNDGKVK-----------GHFHLKAWVCVSEEFCLLKVTKSILEGIGSAASS 258

Query: 188 QAQAKKVDVL---IIDTAG 203
             Q++ +D+L   + D+ G
Sbjct: 259 HMQSENLDLLQQNLKDSLG 277


>gi|224049009|ref|XP_002188737.1| PREDICTED: XPA binding protein 1, GTPase [Taeniopygia guttata]
          Length = 371

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           P  +LV+G+ G GKTT + +L+  +        +   D
Sbjct: 14  PVCVLVLGMAGSGKTTFVQRLAAHLHGQRCPPYVINLD 51


>gi|212537349|ref|XP_002148830.1| urease accessory protein UreG, putative [Penicillium marneffei ATCC
           18224]
 gi|210068572|gb|EEA22663.1| urease accessory protein UreG, putative [Penicillium marneffei ATCC
           18224]
          Length = 275

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 67/211 (31%), Gaps = 22/211 (10%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           PLS+    D+  R   I + G  G GKT ++ KL   + D    +     D F     + 
Sbjct: 45  PLSQHEGRDWKDRAFTIGIGGPVGSGKTALMLKLCLALRDQ-YSIAAVTNDIFTKEDAEF 103

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG- 216
           L              E G    A   E          ++L + T  R  N  +L+   G 
Sbjct: 104 LTRNKALAPERISAIETGGCPHAAVREDISA------NLLALQTLQRKFNTDLLLIESGG 157

Query: 217 -KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGL 275
             +     R        V+ V             +    + G+  L++ K+D     G  
Sbjct: 158 DNLAANYSRELADFIIYVIDVAGGDKVPR-----KGGPGITGSDLLVINKIDLAEAVGAD 212

Query: 276 IPIVV------THKIPVYFLGV--GEGINDL 298
           + ++           P  F  V  G G++ +
Sbjct: 213 LSVMERDAGKIREGGPTVFGSVKHGNGVDHI 243


>gi|169837668|ref|ZP_02870856.1| Cobyrinic acid a,c-diamide synthase [candidate division TM7
           single-cell isolate TM7a]
          Length = 222

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 96  LMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           L    +  + + S   H ++++ G  GVGKTT    L+  +S  G KV +   D
Sbjct: 7   LAERKQRIDSNMSKIKHKIVVMSGKGGVGKTTTSVNLAYGLSLRGYKVGILDAD 60


>gi|297620133|ref|YP_003708238.1| L-seryl-tRNA(Sec) kinase [Methanococcus voltae A3]
 gi|297379110|gb|ADI37265.1| L-seryl-tRNA(Sec) kinase [Methanococcus voltae A3]
          Length = 280

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 14/149 (9%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I++VG+  VGK+T    LSKK+S+     ++   D  R              S      +
Sbjct: 3   IMLVGLPSVGKSTFSKNLSKKLSEKNFDNIILGTDLIR-------------ESFPVWKEK 49

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                  +      +A  +   V+I DT         LM       +    +   AP  V
Sbjct: 50  YEDYIKKMNNYLISEALNEGFTVIIDDTNYYNSKRRDLMHMANSKNKNCISIYLKAPLDV 109

Query: 234 LQVLDATTGQNALR-QVEMFHAVAGTTGL 261
           L   +   G       +E  ++     G 
Sbjct: 110 LLTRNIARGAKIPNSVIEDMYSKFDEMGT 138


>gi|32455924|ref|NP_862381.1| putative DNA partition protein [Micrococcus sp. 28]
 gi|18025370|gb|AAK62478.1| putative DNA partition protein [Micrococcus sp. 28]
          Length = 197

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  ++  G+ V +   D  + +A   L   A+     F          +
Sbjct: 13  GVGKTTSTVLLACALTTRGMTVEVWDADP-QGSATAWLDEAAEVGPVPF--------PHS 63

Query: 181 LAYEAFKQAQAKKVDVLIIDT 201
               A  + +    DVL+IDT
Sbjct: 64  PMNAASLRRRESSADVLLIDT 84


>gi|78184407|ref|YP_376842.1| ATPase [Synechococcus sp. CC9902]
 gi|78168701|gb|ABB25798.1| ATPase [Synechococcus sp. CC9902]
          Length = 552

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 16/184 (8%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ + FN    H   V+ +VG +G GKTTV   L +       +++    D  R +A D 
Sbjct: 324 PVLQNFNLSV-HAGQVVALVGPSGAGKTTVFSLLLRFNCVDQGQLLFDGKDLSRVSARD- 381

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
           L+          V       +  +A      A     D     T   L  ++ L      
Sbjct: 382 LRQ-----QVALVPQRSSVFSGTIAD-----AIRFGRDC----TQEELQQSAKLANAHDF 427

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIP 277
           ++R+    D         V      + A+ +  + +          + +D  A     + 
Sbjct: 428 IVRLPDGYDTRLQERGTNVSGGQLQRIAIARAVLGNPAVMLLDEATSALDAEAEAAVQLG 487

Query: 278 IVVT 281
           +   
Sbjct: 488 LKQA 491


>gi|152979489|ref|YP_001345118.1| putative ATPase [Actinobacillus succinogenes 130Z]
 gi|150841212|gb|ABR75183.1| ATPase involved in chromosome partitioning [Actinobacillus
           succinogenes 130Z]
          Length = 370

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 8/100 (8%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVV--GVNGVGKTTVIGKLSKKMSDAGLKVM 143
            ++  L+   +  L +  N         I+ V  G  GVGK+T    L+  +   G KV 
Sbjct: 81  KEIKWLLTYQIATLKRANNHPAVKGVKNIIAVTSGKGGVGKSTTTVNLALALQAQGAKVG 140

Query: 144 LAAGDTFRS------AAIDQLKIWADRTSADFVCSEIGSD 177
           +   D +         A DQ     D    + +  +    
Sbjct: 141 ILDADIYGPSIPHMLGATDQRPTSPDNQHINPIVVQGLQT 180


>gi|326669021|ref|XP_002662656.2| PREDICTED: hypothetical protein LOC100331153 [Danio rerio]
          Length = 1255

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 39/206 (18%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL-KIWA 162
             D + +  V+L+VG  G GKTT+I  +   +    L V     + ++    +Q  +  +
Sbjct: 551 EMDKNKQNKVLLMVGETGTGKTTLINTMINHL----LGVKFEDQEFYQITEEEQEDQSQS 606

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN--SILMAGIGKMIR 220
             +        +  +  +L                IIDT    H             + R
Sbjct: 607 QTSEITVYEVFVKENPTSLT---------------IIDTPSYGHTKGFEKDGEIAEYLSR 651

Query: 221 VLKRLDP-HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG--------LIMTKMDGTAR 271
           +    D  H   +V  V+ A+  + + ++  +FH+V    G         + T  DG   
Sbjct: 652 LFADEDGVHYIDAVCFVMKASQNRLSGKEHYIFHSVLSLFGRDIENNIVFLFTHSDGGPP 711

Query: 272 GGGLIPI--------VVTHKIPVYFL 289
              L  I          +   PV+FL
Sbjct: 712 ADALNAIDKAEILCRRDSRGKPVHFL 737


>gi|311067883|ref|YP_003972806.1| ATP-dependent Clp protease [Bacillus atrophaeus 1942]
 gi|310868400|gb|ADP31875.1| ATP-dependent Clp protease (class III stress protein) [Bacillus
           atrophaeus 1942]
          Length = 700

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 69/195 (35%), Gaps = 26/195 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +++  +L  +   ++ +VQ+V   V           S+      +      L VG  GVG
Sbjct: 402 KELEAKLHERVIGQEAAVQKVAKAVRR---------SRAGLKSKNRPVGTFLFVGPTGVG 452

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KT +   L+ ++   G K  +   D          +       +  + S  G      A 
Sbjct: 453 KTELSKTLADEL--FGTKDSIIRLDMS--------EYMEKHAVSKIIGSPPGYVGHDEAG 502

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSILM----AGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           +  ++ +     ++++D   + H +   M       G++     R        ++   +A
Sbjct: 503 QLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSNA 562

Query: 240 TTGQNALRQVEMFHA 254
            TG+   +QV++   
Sbjct: 563 GTGE---KQVKVGFQ 574


>gi|296136903|ref|YP_003644145.1| FeS assembly ATPase SufC [Thiomonas intermedia K12]
 gi|295797025|gb|ADG31815.1| FeS assembly ATPase SufC [Thiomonas intermedia K12]
          Length = 270

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 12/118 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID------QLKIWADRTS 166
           V+ ++G NG GKTT    L++ ++  G ++    G T R    D      Q +  A    
Sbjct: 43  VVAIMGPNGSGKTT----LAQVLA--GRELYRVTGGTVRFDGQDLLALPPQERALAGLFL 96

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
           A     EI   +     +A   AQ K   +  +D    L     LM  +G   + L+R
Sbjct: 97  AFQYPVEIPGLSNVYLLKAALNAQRKHRGLPELDAMEFLQQVKALMRELGMDEKFLQR 154


>gi|240140204|ref|YP_002964681.1| gluconokinase; gluconate transport, GNT I system [Methylobacterium
           extorquens AM1]
 gi|240010178|gb|ACS41404.1| gluconokinase; gluconate transport, GNT I system [Methylobacterium
           extorquens AM1]
          Length = 180

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                S  P V++V+GV+G GK+TV   L++++         A GD F +
Sbjct: 1   MTVPRSSAPTVLVVMGVSGSGKSTVAALLAERLGW-----TFADGDDFHT 45


>gi|239932241|ref|ZP_04689194.1| gluconokinase [Streptomyces ghanaensis ATCC 14672]
 gi|291440604|ref|ZP_06579994.1| gluconokinase [Streptomyces ghanaensis ATCC 14672]
 gi|291343499|gb|EFE70455.1| gluconokinase [Streptomyces ghanaensis ATCC 14672]
          Length = 172

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           HV++V+GV G GKTTV   L+ ++      V  A  D F   A     I           
Sbjct: 5   HVVVVMGVAGTGKTTVGPLLATRL-----GVPYAEADDFHPQA----NIDKMSAGVPLTD 55

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +      A+   A ++A      V+      R + +
Sbjct: 56  EDRLPWLDAIGGWAHERAGLGG--VVSCSALKRSYRD 90


>gi|237756371|ref|ZP_04584918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691468|gb|EEP60529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 497

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +  ++Y + +  + +   +++   K L   S  F  + S +  VI + G NG  KTT   
Sbjct: 65  IEDEKYIESLKGKNITVVLTDNGRKSLALASNRFYDNPSEKLKVIAITGTNG--KTTTSN 122

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSA 153
            L++    AG KV +     +R  
Sbjct: 123 LLAQYYEMAGYKVGVIGTINYRVG 146


>gi|224059590|ref|XP_002299922.1| cc-nbs-lrr resistance protein [Populus trichocarpa]
 gi|222847180|gb|EEE84727.1| cc-nbs-lrr resistance protein [Populus trichocarpa]
          Length = 1381

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 17/133 (12%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKL-----KEGITDIISSRRLDDGVREELEDLLIRSDI 58
           ++  +ES S      +G +     L       GI   +   +L + +   L++++   D+
Sbjct: 85  EEFENESWSQTYSYKRGKSKLGKNLVPTCFSAGIGK-MGWSKL-EEITSRLQEIVAEKDL 142

Query: 59  GVAVAQ----KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-V 113
            + +++    +  E L T    ++           E++ ++LM   +  N      P  V
Sbjct: 143 -LDLSEWSLSRFNERLPTTSLMEEKPRVYGRGKDKEVLVELLMRGGEAAN----GSPFSV 197

Query: 114 ILVVGVNGVGKTT 126
           I ++G  GVGKTT
Sbjct: 198 ISIIGFGGVGKTT 210


>gi|209886748|ref|YP_002290605.1| cobyrinic Acid a,c-diamide synthase [Oligotropha carboxidovorans
           OM5]
 gi|209874944|gb|ACI94740.1| cobyrinic Acid a,c-diamide synthase [Oligotropha carboxidovorans
           OM5]
          Length = 233

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG-SDAA 179
           G GKTTV   L+ + +  G   ++   D          +  A   + D     +    A 
Sbjct: 13  GSGKTTVAIILAGEFAKHGYSAVIVDADPQ----GSSYQWHASSVARDLSPQGVDLVRAP 68

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAG 203
                A    +    DV++IDT G
Sbjct: 69  DEKTLAQAIDRLDGYDVVVIDTPG 92


>gi|163786404|ref|ZP_02180852.1| Deoxynucleoside kinase subfamily, putative [Flavobacteriales
           bacterium ALC-1]
 gi|159878264|gb|EDP72320.1| Deoxynucleoside kinase subfamily, putative [Flavobacteriales
           bacterium ALC-1]
          Length = 204

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG---DTFRSAAIDQLKIWADRTSADFV 170
           I V G  G GKTT+   L+K          +      D F     +Q++ W+      F+
Sbjct: 3   IAVAGNIGAGKTTLTKLLAKHYKWEAQLEDVVDNPYLDDF----YNQMERWSFNLQVYFL 58

Query: 171 CSEIGS 176
            S    
Sbjct: 59  NSRFRQ 64


>gi|163852876|ref|YP_001640919.1| carbohydrate kinase [Methylobacterium extorquens PA1]
 gi|163664481|gb|ABY31848.1| carbohydrate kinase, thermoresistant glucokinase family
           [Methylobacterium extorquens PA1]
          Length = 180

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                S  P V++V+GV+G GK+TV   L++++         A GD F +
Sbjct: 1   MTVPRSSAPTVLVVMGVSGSGKSTVAALLAERLGW-----TFADGDDFHT 45


>gi|149173305|ref|ZP_01851936.1| ABC transporter, ATP-binding protein [Planctomyces maris DSM 8797]
 gi|148848111|gb|EDL62443.1| ABC transporter, ATP-binding protein [Planctomyces maris DSM 8797]
          Length = 319

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            VG NG GKTT +  +   +   G KV +   D 
Sbjct: 41  FVGPNGAGKTTTLKIICTLLRPQGGKVEVFGHDV 74


>gi|29831128|ref|NP_825762.1| ion-transporting ATPase [Streptomyces avermitilis MA-4680]
 gi|29608242|dbj|BAC72297.1| putative ion-transporting ATPase [Streptomyces avermitilis MA-4680]
          Length = 474

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA----IDQLKIWADRT-SA 167
           +++  G  GVGKTT    L  + ++ G KV++   D  R  A    ID L     R    
Sbjct: 48  IVVCCGSGGVGKTTTAAALGLRAAERGRKVVVLTIDPARRLAQSMGIDSLDNIPRRVKGI 107

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           D   S             F +      D
Sbjct: 108 DDSASGELHAMMLDMKRTFDEIVEAHAD 135


>gi|121612767|ref|YP_001001249.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167006141|ref|ZP_02271899.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249623|gb|EAQ72582.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 368

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 104/320 (32%), Gaps = 56/320 (17%)

Query: 14  IRKLTK----GFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVE 68
           + KL      GF    +       + +   ++ DDGV  ++E +   +     VA +I +
Sbjct: 6   LEKLKTVKYPGFEKDIVSF-----NFVKDIKIQDDGVFIDIEIV--SA--NPEVANEIRK 56

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              T+  +        L  ++  I +         N     +  +++  G  GVGK+T  
Sbjct: 57  N-ATEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMVSSGKGGVGKSTTT 115

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+  M+  G +V +   D +               +   +  E  +    +  +  K 
Sbjct: 116 VNLAISMAKMGKRVGILDADIYGP-------------NIPRMLGETKTQP-EVVGQRLKP 161

Query: 189 AQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQV----LDATTGQ 243
                   + + + G L      LM     +++ +++L        L V    +   TG 
Sbjct: 162 ILTHG---VYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD 218

Query: 244 NALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIPIVVTHKIPVY--------FLG- 290
             +   +     AG    + T     +D + R    + +     IP+         FL  
Sbjct: 219 AQITSAQSIPITAGV--CVSTPQTVSLDDSKR---ALDMFNKLHIPIAGVIENMSGFLCP 273

Query: 291 -VGEGINDLEPFVAKDFSAV 309
             G+  +      A+D +  
Sbjct: 274 DNGKEYDIFGKGTAEDMAKA 293


>gi|307266366|ref|ZP_07547904.1| prolyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918602|gb|EFN48838.1| prolyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 570

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
                 + +      AP+ V+ V    + +   R  E  +A     G+ +   D   R G
Sbjct: 455 EQHHDEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKEGIEVLIDDRDLRAG 514

Query: 274 GLIPIVVTHKIPVYFLGVGEGIND 297
                     IP+  + VG+ ++D
Sbjct: 515 VKFNDADLLGIPIR-ITVGKKVDD 537


>gi|291546319|emb|CBL19427.1| CO dehydrogenase maturation factor [Ruminococcus sp. SR1/5]
          Length = 257

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I V G  GVGKTT    L++  +D G KV+ A  D
Sbjct: 3   IAVTGKGGVGKTTFAATLARLYADEGKKVLAADVD 37


>gi|270260883|ref|ZP_06189156.1| hypothetical protein SOD_a01080 [Serratia odorifera 4Rx13]
 gi|270044367|gb|EFA17458.1| hypothetical protein SOD_a01080 [Serratia odorifera 4Rx13]
          Length = 211

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           I+++G    GVGK+T    ++  +    G   ++   D  + + +       +      +
Sbjct: 2   IVLIGSQKGGVGKSTKAVNIAGYLILKQGKTAIIVDADDQK-SIMTWYNDRQNVEGLPHI 60

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                S           +      D +I+DTAGR    
Sbjct: 61  PVVAASGKIKETLLELDR----HYDYVIVDTAGRDSAE 94


>gi|256027596|ref|ZP_05441430.1| MRP family nucleotide-binding protein [Fusobacterium sp. D11]
 gi|289765555|ref|ZP_06524933.1| MRP-family nucleotide-binding protein [Fusobacterium sp. D11]
 gi|289717110|gb|EFD81122.1| MRP-family nucleotide-binding protein [Fusobacterium sp. D11]
          Length = 257

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 96  LMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---- 150
           ++    P   +  +  +VI ++ G  GVGK+TV   L+K++   G  V +   D      
Sbjct: 1   MIQKDAPKVKENKNIKNVIAVMSGKGGVGKSTVTTLLAKELRKKGYAVGILDADVTGPSI 60

Query: 151 -RSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            R  A+ + K+  D  +   V ++ G +  ++
Sbjct: 61  PRLMAVSEQKMTTDGKNMYPVVTKDGIEIVSI 92


>gi|222111328|ref|YP_002553592.1| arsenite-activated ATPase ArsA [Acidovorax ebreus TPSY]
 gi|221730772|gb|ACM33592.1| arsenite-activated ATPase ArsA [Acidovorax ebreus TPSY]
          Length = 587

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ++++G  GVGKTT+   ++ +++  GL V L   D    AA     + A   +      +
Sbjct: 330 VMLMGKGGVGKTTLAAAIAVELAHRGLPVHLTTSD---PAAHLTDTLEASLDNLTVSRID 386

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
             ++         +   A+      +D  GR      L +   + I V + 
Sbjct: 387 PHAETERYRQHVLETQGAQ------LDAEGRALLEEDLRSPCTEEIAVFQA 431


>gi|194467129|ref|ZP_03073116.1| guanylate kinase [Lactobacillus reuteri 100-23]
 gi|194454165|gb|EDX43062.1| guanylate kinase [Lactobacillus reuteri 100-23]
          Length = 191

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 12/119 (10%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRT 165
            +  +V +V G  G GKTTV    +  + D      +    T   R    D +    +  
Sbjct: 3   KNNKYVFIVTGAAGSGKTTV----ANYLQDHYGMHRVITHTTRLPRPGEQDGVDYHFETP 58

Query: 166 SAD-----FVCSEIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKM 218
           ++                   + E  ++   +   DV+++DTAG +  +  L      +
Sbjct: 59  NSMKKLHLLEQVTYDQFQYGSSLEGLEEGWKQGENDVIVLDTAGTITYHQQLGPQAVII 117


>gi|114321546|ref|YP_743229.1| general secretory pathway protein E [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227940|gb|ABI57739.1| type II secretion system protein E (GspE) [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 515

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 12/66 (18%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGV 122
           +++V  LL KR  +            +L H  + P +     D  ++PH IL+V G  G 
Sbjct: 232 ERVVLRLLDKRAGR-----------LDLTHLGMEPKTLRCMADLVNKPHGILLVTGPTGS 280

Query: 123 GKTTVI 128
           GKTT +
Sbjct: 281 GKTTTL 286


>gi|322702381|gb|EFY94038.1| tetratricopeptide repeat domain protein [Metarhizium anisopliae
           ARSEF 23]
          Length = 1007

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 2/107 (1%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            V +K+ + +  +   ++ +          ++  +      P   + S      ++ G+ 
Sbjct: 305 EVYKKLFKRIR-RLIKEENTSLPDSSRRDNVLDDLHDSCLPPTTANGSTMQKRFILYGLG 363

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           G GKT    K +++  +    +      + R  A   L   A     
Sbjct: 364 GSGKTQTCLKFAQEYRERFWGIFWIDA-SSRDTAHQGLLEVARILGL 409


>gi|294341330|emb|CAZ89745.1| Arsenical pump-driving ATPase (Arsenite-translocating ATPase)
           (Arsenical resistance ATPase) (Arsenite-transporting
           ATPase) [Thiomonas sp. 3As]
          Length = 592

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ++++G  GVGKTT+   ++ +++  GL V L   D    AA     +     +      +
Sbjct: 329 VMLMGKGGVGKTTLAAAIAVELAHRGLPVHLTTSD---PAAHLTETLSGALDNLTVSRID 385

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
              +             A+      +D  GR   +  L +   + I V + 
Sbjct: 386 PHIETERYRQHVLATKGAQ------LDAQGRALLDEDLRSPCTEEIAVFQA 430


>gi|302381508|ref|YP_003817331.1| Soj/ParA-related ATPase protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192136|gb|ADK99707.1| Soj/ParA-related ATPase protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 224

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVCSEIGSDAA 179
           G GKTTV   L+     +G +V+L   D  RS+ A    +          V  ++ +  A
Sbjct: 12  GSGKTTVAVALALTWQRSGKRVLLLDSDPQRSSWAYLHSRTQPGLDVRTTVSGKLFTTKA 71

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           A        A+ +  D+L++DT      +
Sbjct: 72  A--------AEREGYDILVVDTPAHPEAD 92


>gi|317046735|ref|YP_004114383.1| ATP-dependent metalloprotease FtsH [Pantoea sp. At-9b]
 gi|316948352|gb|ADU67827.1| ATP-dependent metalloprotease FtsH [Pantoea sp. At-9b]
          Length = 645

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 156 DVAGCDEAKEEVGELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 210

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 211 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 254

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 255 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|84043654|ref|XP_951617.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|33348541|gb|AAQ15866.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
 gi|62359188|gb|AAX79632.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 270

 Score = 38.3 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 3/105 (2%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            V+ L+   +  L          R   +L+VG+ G GKTT+  +L  +        M   
Sbjct: 9   IVALLVAYYISTLFSAVRGTTRRRSRSVLLVGLTGSGKTTLFAQLVARKRVQVRTSMEPN 68

Query: 147 GDTFRSAAIDQLK---IWADRTSADFVCSEIGSDAAALAYEAFKQ 188
               R A+  + +     ++ +    +              A ++
Sbjct: 69  RGVMRLASAAENEDPTAGSESSGVTIIDFPGHRRLRESLMRALEE 113


>gi|332086388|gb|EGI91535.1| cell division protease ftsH [Shigella dysenteriae 155-74]
          Length = 536

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 51  EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 106

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 107 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 150

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 151 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 196


>gi|329297290|ref|ZP_08254626.1| ATP-dependent metalloprotease [Plautia stali symbiont]
          Length = 641

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 152 DVAGCDEAKEEVGELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 206

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 207 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 250

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 251 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 303


>gi|325121521|gb|ADY81044.1| ATP-dependent helicase [Acinetobacter calcoaceticus PHEA-2]
          Length = 1311

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 75/227 (33%), Gaps = 45/227 (19%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E+E L  +S     V Q+  E L   +  +D+ V +    + + I               
Sbjct: 32  EIEKLFEQS--NAKVRQRF-ERLPKIKLNQDLPVSQYADRLIDAI--------------- 73

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS- 166
             +  VI+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+    
Sbjct: 74  -QKHQVIIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGE 131

Query: 167 ---------ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSIL 211
                      F           L  +    A+          D +IID A     N   
Sbjct: 132 KLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRYLSKYDTIIIDEAHERSLNIDF 191

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           + G       LK+L P  P   + V  AT     + +   +   A  
Sbjct: 192 IMGY------LKQLLPKRPDLKVIVTSATL---DVNRFSNYFNDAPI 229


>gi|314935996|ref|ZP_07843345.1| ABC transporter, ATP-binding protein [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655813|gb|EFS19556.1| ABC transporter, ATP-binding protein [Staphylococcus hominis subsp.
           hominis C80]
          Length = 645

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           D +    +  +  L      P++ P N + +   H I ++G NGVGKTT+I  ++ +   
Sbjct: 323 DRNTGNDVMHIRNLEVGYQSPITAPINIEVTKGDH-IAIIGPNGVGKTTLIKTIANRQKA 381

Query: 138 AG 139
            G
Sbjct: 382 LG 383


>gi|291616004|ref|YP_003518746.1| HflB [Pantoea ananatis LMG 20103]
 gi|291151034|gb|ADD75618.1| HflB [Pantoea ananatis LMG 20103]
          Length = 646

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 156 DVAGCDEAKEEVGELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 210

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 211 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 254

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 255 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|170696415|ref|ZP_02887543.1| type VI secretion ATPase, ClpV1 family [Burkholderia graminis
           C4D1M]
 gi|170138676|gb|EDT06876.1| type VI secretion ATPase, ClpV1 family [Burkholderia graminis
           C4D1M]
          Length = 891

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 614 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKMVTINMSEYQEAHSVSGLK- 671

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 672 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 721

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 722 TMDDAEGREIDFRNTLIILTSNVGSQAVMQA 752


>gi|169831287|ref|YP_001717269.1| daunorubicin resistance ABC transporter ATPase subunit [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638131|gb|ACA59637.1| daunorubicin resistance ABC transporter ATPase subunit [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 326

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-SAAI 155
            +G NG GKTT I  L+  +   G    +   D  R  AA+
Sbjct: 32  FLGPNGAGKTTTIKVLATLLRPTGGTARVNGYDVVREPAAV 72


>gi|118588930|ref|ZP_01546337.1| hypothetical protein SIAM614_12798 [Stappia aggregata IAM 12614]
 gi|118438259|gb|EAV44893.1| hypothetical protein SIAM614_12798 [Stappia aggregata IAM 12614]
          Length = 1217

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 70/225 (31%), Gaps = 60/225 (26%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-----LVVGVNGVGKT 125
           L +   +  +    L  +SE +   L  L    N   + R ++      L++G  G GKT
Sbjct: 71  LEREILQPKASDADLQIMSERMKDALKTLK---NSSGNARTYLYDLPWYLMIGPPGAGKT 127

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T        +  +GLK   +           +L+        D+  +E            
Sbjct: 128 TA-------LMHSGLKFAGSRA----QGEAQKLEGLGGTRYCDWWFAETA---------- 166

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK----MIRVLKRLDPHAPHSVLQVL---- 237
                      ++IDTAGR            +     + +L++  P  P + + V     
Sbjct: 167 -----------VLIDTAGRYTTQDSDEEHDREAWLGFLNILRKARPRQPINGVMVSISLE 215

Query: 238 --------DATTGQNALRQ-VEMFHAVAGTT---GLIMTKMDGTA 270
                   +     +A+R  +   +          +I TK D  A
Sbjct: 216 DLMTLSDDELKQHSDAIRTRLIELYKTLKIDFPVYVIFTKADTVA 260


>gi|30468114|ref|NP_849001.1| ompR-like transcriptional regulator [Cyanidioschyzon merolae strain
           10D]
 gi|30409214|dbj|BAC76163.1| ompR-like transcriptional regulator [Cyanidioschyzon merolae strain
           10D]
          Length = 224

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           L+     ++RVLK +  +       V++AT G NA++Q  +         +++ K+DG  
Sbjct: 5   LIDEDVYILRVLKHIILNRLALAH-VMEATDGINAVQQFRIHQPHLVILEVMIPKVDG-- 61

Query: 271 RGGGLIPIVVTHKIPVYFL-GVGE---GINDLE---------PFVAKDFSAVITGCL 314
             G    I     +P+  + G+ +    I   E         PF A++  A I G L
Sbjct: 62  -FGVCQWIRTQSNVPIMMVTGLTQVKDKITAFELGADDYVVKPFCAREIEARIKGLL 117


>gi|330502646|ref|YP_004379515.1| general secretory pathway protein E [Pseudomonas mendocina NK-01]
 gi|328916932|gb|AEB57763.1| general secretory pathway protein E [Pseudomonas mendocina NK-01]
          Length = 495

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 96  LMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVI 128
           +    +        +PH IL+V G  G GKTT +
Sbjct: 233 MRGEDRALMEQTVRKPHGILLVTGPTGSGKTTTL 266


>gi|326391122|ref|ZP_08212668.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325992821|gb|EGD51267.1| prolyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 570

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
                 + +      AP+ V+ V    + +   R  E  +A     G+ +   D   R G
Sbjct: 455 EQHHDEKGIIWPMSVAPYHVIIVPVNVSNEAQNRVAEDIYAALQKEGIEVLIDDRDLRAG 514

Query: 274 GLIPIVVTHKIPVYFLGVGEGIND 297
                     IP+  + VG+ ++D
Sbjct: 515 VKFNDADLLGIPIR-ITVGKKVDD 537


>gi|332716846|ref|YP_004444312.1| ABC transporter, nucleotide binding/ATPase protein (branched chain
           amino acid) [Agrobacterium sp. H13-3]
 gi|325063531|gb|ADY67221.1| ABC transporter, nucleotide binding/ATPase protein (branched chain
           amino acid) [Agrobacterium sp. H13-3]
          Length = 272

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           V  ++G NG GKTTV   L+K +   G  +     D
Sbjct: 44  VHALIGPNGAGKTTVFNLLTKFLQPTGGAITFMGTD 79


>gi|311277848|ref|YP_003940079.1| ATP-dependent metalloprotease FtsH [Enterobacter cloacae SCF1]
 gi|308747043|gb|ADO46795.1| ATP-dependent metalloprotease FtsH [Enterobacter cloacae SCF1]
          Length = 647

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    + + L   S+ F       P  +L+VG  G GKT     L+K ++ 
Sbjct: 156 DVAGCDEAKEEVGELVEYLREPSR-FQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAG 210

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 211 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-ID 254

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 255 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|291551082|emb|CBL27344.1| ATPase components of ABC transporters with duplicated ATPase
           domains [Ruminococcus torques L2-14]
          Length = 518

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  ++L++  +L+     PLSKP N+    R   I +VG NG+GKTT
Sbjct: 320 TPGKMLFETKDLVTGYDEPLSKPLNFSME-RGQKIALVGTNGIGKTT 365


>gi|284006662|emb|CBA71924.1| ATP-dependent metalloprotease [Arsenophonus nasoniae]
          Length = 651

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  F       P  IL+VG  G GKT     L+K ++        
Sbjct: 163 EAKEEVGELVEYLREPGRFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 218

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 219 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 262

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 263 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 308


>gi|169633182|ref|YP_001706918.1| ATP-dependent helicase [Acinetobacter baumannii SDF]
 gi|169151974|emb|CAP00836.1| ATP-dependent helicase [Acinetobacter baumannii]
          Length = 1285

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 74/227 (32%), Gaps = 45/227 (19%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E+E L  +S     V Q+  E L      +D+ V +    + E I               
Sbjct: 32  EIEKLFEQS--NAKVRQRF-ERLPKITLNQDLPVTQYADRLIEAI--------------- 73

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS- 166
             +  VI+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+    
Sbjct: 74  -QKHQVIIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGE 131

Query: 167 ---------ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSIL 211
                      F           L  +    A+          D +IID A     N   
Sbjct: 132 KLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFVSKYDTIIIDEAHERSLNIDF 191

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           + G       LK+L P  P   + V  AT     + +   +   A  
Sbjct: 192 IMGY------LKQLLPKRPDLKVIVTSATL---DVNRFSNYFNNAPI 229


>gi|153830093|ref|ZP_01982760.1| adenylylsulfate kinase [Vibrio cholerae 623-39]
 gi|148874405|gb|EDL72540.1| adenylylsulfate kinase [Vibrio cholerae 623-39]
          Length = 215

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + L  ++ AK  +V    ++V +     L             RP V+   G++G GK+TV
Sbjct: 6   DSLRFEQDAKPENVVWHRHEVDKAQRAALKQ----------QRPAVLWFTGLSGAGKSTV 55

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSA 153
            G L  +++  G    L  GD  R  
Sbjct: 56  AGALENRLAALGYHTYLLDGDNVRHG 81


>gi|146387159|pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382
           From Archaeoglobus Fulgidus, Northeast Structural
           Genomics Target Gr165
          Length = 262

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
                 E I + L  +          +  + +  G  GVGK+TV   L+   +  G KV 
Sbjct: 2   QKRVTDEEIKERLGKI----------KSRIAVXSGKGGVGKSTVTALLAVHYARQGKKVG 51

Query: 144 LAAGDT 149
           +   D 
Sbjct: 52  ILDADF 57


>gi|66968645|ref|YP_245399.1| ParA-like protein [Actinobacillus porcitonsillarum]
 gi|66840772|emb|CAH25819.2| ParA-like protein [Actinobacillus porcitonsillarum]
          Length = 215

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I+++G N  G  KTT    ++  ++  G  V L   D  RSA+    + +++R   +   
Sbjct: 2   IVIIGCNKGGAAKTTTAVNVAIGLAMQGKDVCLVDADAQRSAS----RWYSERELNERKP 57

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           S    +      +  KQ    K D +I+D AGR    
Sbjct: 58  SITLIEKRDNIAQTLKQLND-KFDYVIVDVAGRNSKE 93


>gi|109897971|ref|YP_661226.1| adenylylsulfate kinase [Pseudoalteromonas atlantica T6c]
 gi|109700252|gb|ABG40172.1| adenylylsulfate kinase [Pseudoalteromonas atlantica T6c]
          Length = 198

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            +P V+ + G++G GK+T+   L KK++D G    L  GD  R  
Sbjct: 23  QKPCVVWLTGLSGSGKSTIANLLEKKLADNGKHTYLLDGDNVRHG 67


>gi|326496172|dbj|BAJ90707.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 351

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 36/188 (19%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVI 128
             ++        + + +  E + +++  L    N+    +  P  +L+ G  G GKT   
Sbjct: 55  RPRKQQVGFDDVQGVDEAKEELVEIVSCLRGSLNYKKLGARLPRGVLLAGPPGTGKT--- 111

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+K ++                A I    + A     +       +    L  EA + 
Sbjct: 112 -LLAKAVAGE--------------AGIPFFSVSASEF-VEMFVGRGAARVRDLFKEAKEA 155

Query: 189 AQAKKVDVLIID-------TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A +    ++ ID       + GR  N+         + ++L  +D       + V+ AT 
Sbjct: 156 APS----IIFIDELDAVGGSRGRSFNDER----DQTLNQLLTEMDGFDSDVKVIVMAATN 207

Query: 242 GQNALRQV 249
              AL   
Sbjct: 208 RPKALDSA 215


>gi|224054184|ref|XP_002298133.1| predicted protein [Populus trichocarpa]
 gi|222845391|gb|EEE82938.1| predicted protein [Populus trichocarpa]
          Length = 328

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 20/57 (35%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
             F       P VI      G GKTT++  LS      G K    + D F   A  Q
Sbjct: 95  SQFKDSEHIPPLVIGFSAPQGCGKTTLVFALSYLFQTTGRKSATLSIDDFYLTAEGQ 151


>gi|217972308|ref|YP_002357059.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS223]
 gi|304410272|ref|ZP_07391891.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS183]
 gi|307302017|ref|ZP_07581775.1| ATP-dependent metalloprotease FtsH [Shewanella baltica BA175]
 gi|217497443|gb|ACK45636.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS223]
 gi|304351681|gb|EFM16080.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS183]
 gi|306914055|gb|EFN44476.1| ATP-dependent metalloprotease FtsH [Shewanella baltica BA175]
 gi|315268724|gb|ADT95577.1| ATP-dependent metalloprotease FtsH [Shewanella baltica OS678]
          Length = 652

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   K    DV+      +  + +   L   +K F       P  +L+VG  G GK
Sbjct: 145 KLMSEDQIKTTFADVAGCDEAKEEVKELVDYLRDPTK-FQKLGGRIPTGVLMVGPPGTGK 203

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 204 T----LLAKAIAGESKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 244

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 245 AKKSAPCIIF-IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATN 303

Query: 242 GQNALRQV 249
             + L   
Sbjct: 304 RPDVLDSA 311


>gi|156553228|ref|XP_001599318.1| PREDICTED: similar to dynein, axonemal, heavy polypeptide 1 [Nasonia
            vitripennis]
          Length = 3983

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 66   IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN------WDFSHRPHVILVVGV 119
            IV +L  K   K +     +  V + I  M +   K F       ++ +   H +++VG 
Sbjct: 1556 IVSDLFPKVEEKSIDYDMFIAAVRKTIADMGLADVKEFVKKVIQLYETTLVRHGLMLVGP 1615

Query: 120  NGVGKT 125
             G GKT
Sbjct: 1616 TGSGKT 1621


>gi|21221996|ref|NP_627775.1| ion-transporting ATPase [Streptomyces coelicolor A3(2)]
 gi|5139632|emb|CAB45559.1| putative ion-transporting ATPase [Streptomyces coelicolor A3(2)]
          Length = 481

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 38/121 (31%), Gaps = 7/121 (5%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPH--VILVVGVNGVGKTTVIGKLSKKMSDAG 139
           Q+      +   + L P            PH  +++  G  GVGKTT    L  + ++ G
Sbjct: 18  QKGDRARHQEGARRLTPARVLDVDALLEDPHNRIVVCCGSGGVGKTTTAAALGLRAAERG 77

Query: 140 LKVMLAAGDTFRSAA----IDQLKIWADRT-SADFVCSEIGSDAAALAYEAFKQAQAKKV 194
            KV++   D  R  A    ID L     R    D                 F +      
Sbjct: 78  RKVVVLTIDPARRLAQSMGIDSLDNTPRRVKGVDDSAGGELHAMMLDMKRTFDEIVESHA 137

Query: 195 D 195
           D
Sbjct: 138 D 138


>gi|154246431|ref|YP_001417389.1| arginine/ornithine transport system ATPase [Xanthobacter
           autotrophicus Py2]
 gi|154160516|gb|ABS67732.1| LAO/AO transport system ATPase [Xanthobacter autotrophicus Py2]
          Length = 328

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 19/137 (13%)

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
                  L+  +L      F    +         GV GVGK+T I  L   ++  G KV 
Sbjct: 37  HRRRAQALLQSLLPRTGGAFRVGIT---------GVPGVGKSTTIDALGTYLTQQGHKVA 87

Query: 144 LAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           + A D  + R+          + +L +  +        S      AA   E     +A  
Sbjct: 88  VLAVDPSSTRTGGSILGDKTRMSRLAVDPNAFIRPSPSSGTLGGIAAKTRETMLLCEAAG 147

Query: 194 VDVLIIDTAGRLHNNSI 210
            DV++++T G   + + 
Sbjct: 148 FDVVLVETVGVGQSETA 164


>gi|148544512|ref|YP_001271882.1| deoxyadenosine kinase [Lactobacillus reuteri DSM 20016]
 gi|184153876|ref|YP_001842217.1| deoxyguanosine kinase [Lactobacillus reuteri JCM 1112]
 gi|194466700|ref|ZP_03072687.1| Deoxyadenosine kinase [Lactobacillus reuteri 100-23]
 gi|227363060|ref|ZP_03847196.1| deoxyadenosine kinase [Lactobacillus reuteri MM2-3]
 gi|227543889|ref|ZP_03973938.1| deoxyadenosine kinase [Lactobacillus reuteri CF48-3A]
 gi|300909635|ref|ZP_07127096.1| deoxynucleoside kinase [Lactobacillus reuteri SD2112]
 gi|325682833|ref|ZP_08162349.1| deoxynucleoside kinase [Lactobacillus reuteri MM4-1A]
 gi|146749585|gb|ABQ44378.1| deoxynucleoside kinase [Lactobacillus reuteri]
 gi|148531546|gb|ABQ83545.1| Deoxyadenosine kinase [Lactobacillus reuteri DSM 20016]
 gi|183225220|dbj|BAG25737.1| deoxyguanosine kinase [Lactobacillus reuteri JCM 1112]
 gi|194453736|gb|EDX42633.1| Deoxyadenosine kinase [Lactobacillus reuteri 100-23]
 gi|227071881|gb|EEI10168.1| deoxyadenosine kinase [Lactobacillus reuteri MM2-3]
 gi|227186150|gb|EEI66221.1| deoxyadenosine kinase [Lactobacillus reuteri CF48-3A]
 gi|300893500|gb|EFK86859.1| deoxynucleoside kinase [Lactobacillus reuteri SD2112]
 gi|324977183|gb|EGC14134.1| deoxynucleoside kinase [Lactobacillus reuteri MM4-1A]
          Length = 210

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDA 138
           VI+  G+ GVGKTT+ GK+++ +   
Sbjct: 2   VIITAGMIGVGKTTLTGKIAEHLHTK 27


>gi|115526205|ref|YP_783116.1| ABC transporter related [Rhodopseudomonas palustris BisA53]
 gi|115520152|gb|ABJ08136.1| ABC transporter related [Rhodopseudomonas palustris BisA53]
          Length = 250

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           ++G NG GKTTVI  L+  +   G K++L   D  R
Sbjct: 35  LIGPNGAGKTTVINLLTGVLKPNGGKILLQGHDVTR 70


>gi|307945328|ref|ZP_07660664.1| putative mrp-like protein [Roseibium sp. TrichSKD4]
 gi|307771201|gb|EFO30426.1| putative mrp-like protein [Roseibium sp. TrichSKD4]
          Length = 394

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 7/79 (8%)

Query: 96  LMPLSKPFNWDFSHRP------HVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +   + P     + +P       +I V  G  GVGK+T    L+  +   GLKV +   D
Sbjct: 111 MQGRATPSEEQGAQKPGVPGVKTIIAVASGKGGVGKSTTTANLALGLQANGLKVGVLDAD 170

Query: 149 TFRSAAIDQLKIWADRTSA 167
            +  +     ++       
Sbjct: 171 IYGPSVPRLFQVTGRPEPV 189


>gi|258539919|ref|YP_003174418.1| stage V sporulation protein K [Lactobacillus rhamnosus Lc 705]
 gi|257151595|emb|CAR90567.1| Stage V sporulation protein K [Lactobacillus rhamnosus Lc 705]
          Length = 852

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 51/179 (28%), Gaps = 37/179 (20%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G+   +  V +L+ +              V + +   L   +KP         + ++  
Sbjct: 595 VGLNSVKAFVNDLVKQVK------------VDQALQDKLPDATKPT--------YHMVFA 634

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL---------KIWADRTSAD 168
           G  G GKTTV   +++   + G+       +  R   + Q          K   D     
Sbjct: 635 GPPGTGKTTVARLIAQLFYNLGILPKDTVSEVARPDLVGQYIGQTAQKTGKAIRDAMGGV 694

Query: 169 FVCSEIGSDAA-------ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
               E    +          A E F        D  I   AG   N+          +R
Sbjct: 695 LFVDEAYQLSQGSENDFGKEAIETFITELENNRDKFIAIFAG-YTNDMNDFLEANPGLR 752


>gi|256786918|ref|ZP_05525349.1| ion-transporting ATPase [Streptomyces lividans TK24]
 gi|289770811|ref|ZP_06530189.1| ion-transporting ATPase [Streptomyces lividans TK24]
 gi|289701010|gb|EFD68439.1| ion-transporting ATPase [Streptomyces lividans TK24]
          Length = 481

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 38/121 (31%), Gaps = 7/121 (5%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPH--VILVVGVNGVGKTTVIGKLSKKMSDAG 139
           Q+      +   + L P            PH  +++  G  GVGKTT    L  + ++ G
Sbjct: 18  QKGDRARHQEGARRLTPARVLDVDALLEDPHNRIVVCCGSGGVGKTTTAAALGLRAAERG 77

Query: 140 LKVMLAAGDTFRSAA----IDQLKIWADRT-SADFVCSEIGSDAAALAYEAFKQAQAKKV 194
            KV++   D  R  A    ID L     R    D                 F +      
Sbjct: 78  RKVVVLTIDPARRLAQSMGIDSLDNTPRRVKGVDDSAGGELHAMMLDMKRTFDEIVESHA 137

Query: 195 D 195
           D
Sbjct: 138 D 138


>gi|221130739|ref|XP_002163108.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38,
           partial [Hydra magnipapillata]
          Length = 1072

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 17/144 (11%)

Query: 29  KEGITDIIS-SRRLDDGVREELEDLLIRSDIG-VAVAQKIVEELLTKRYAKDVSVQRVLY 86
              I DI+   R+ D  V +      +  D G    +Q+  E +  K    + S      
Sbjct: 417 GTKIGDILGIERKEDKDVSD------LHGDEGDYKKSQQFSEVMKEK---SEASSDFCKK 467

Query: 87  DVSELIHKMLMPLSKPFNW-DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
              +   + L   +             V+++VG  G GKTT   +L++ + + G      
Sbjct: 468 KTLKEQRQYLPIFAARSELLTIIRDNPVVVIVGETGSGKTT---QLTQYLLEDGYSKYGI 524

Query: 146 AGDTF--RSAAIDQLKIWADRTSA 167
            G T   R AA+   K  ++    
Sbjct: 525 IGCTQPRRVAAMSVAKRVSEEMQV 548


>gi|188532498|ref|YP_001906295.1| ATP-dependent metalloprotease [Erwinia tasmaniensis Et1/99]
 gi|188027540|emb|CAO95387.1| Cell division protease FtsH [Erwinia tasmaniensis Et1/99]
          Length = 644

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|171185549|ref|YP_001794468.1| ABC transporter related [Thermoproteus neutrophilus V24Sta]
 gi|170934761|gb|ACB40022.1| ABC transporter related [Thermoproteus neutrophilus V24Sta]
          Length = 218

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           + K L              P V  VVG NG GKTT++  L+  +   G
Sbjct: 7   VEKRLGGFL--LRASGRLEPGVTCVVGPNGSGKTTLLKILAGLLKPDG 52


>gi|66968654|ref|YP_245407.1| ParA-like [Actinobacillus porcitonsillarum]
 gi|66968665|ref|YP_245417.1| ParA-like [Actinobacillus porcitonsillarum]
 gi|150406531|ref|YP_001315011.1| ParA-like protein [Actinobacillus porcitonsillarum]
 gi|150406545|ref|YP_001315020.1| ParA-like protein [Actinobacillus porcitonsillarum]
 gi|189332444|ref|YP_001941141.1| ParA-like protein [Actinobacillus pleuropneumoniae]
 gi|240950006|ref|ZP_04754315.1| ParA-like protein [Actinobacillus minor NM305]
 gi|66840781|emb|CAH25826.1| ParA-like [Actinobacillus porcitonsillarum]
 gi|66840792|emb|CAH25835.1| ParA-like [Actinobacillus porcitonsillarum]
 gi|150036852|emb|CAO03047.1| ParA-like protein [Actinobacillus porcitonsillarum]
 gi|150036862|emb|CAO03057.1| ParA-like protein [Actinobacillus porcitonsillarum]
 gi|189096575|gb|ACD76086.1| ParA-like protein [Actinobacillus pleuropneumoniae]
 gi|240295521|gb|EER46262.1| ParA-like protein [Actinobacillus minor NM305]
          Length = 215

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I+++G N  G  KTT    ++  ++  G  V L   D  RSA+    + +++R   +   
Sbjct: 2   IVIIGCNKGGAAKTTTAVNVAIGLAMQGKDVCLVDADAQRSAS----RWYSERELNERKP 57

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           S    +      +  KQ    K D +I+D AGR    
Sbjct: 58  SITLIEKRDNIAQTLKQLND-KFDYVIVDVAGRNSKE 93


>gi|159185954|ref|NP_356711.2| replication protein A [Agrobacterium tumefaciens str. C58]
 gi|159141088|gb|AAK89496.2| replication protein A [Agrobacterium tumefaciens str. C58]
          Length = 404

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 58/177 (32%), Gaps = 18/177 (10%)

Query: 90  ELIHKMLMPLSKPFNWDFSHR-----PHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVM 143
           + I K L   ++       HR       VI V+    G GKTT    L++ ++  G +V+
Sbjct: 93  DEIRKFLDQGARGTRRYLPHRREGEELQVIAVMNFKGGSGKTTTSAHLAQYLALRGYRVL 152

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
               D    A++  L                 +   A+ Y+  ++  A+ V    I    
Sbjct: 153 AIDLDPQ--ASLSALFGHQPEIDV----GPNETLYGAIRYDDERRPIAEIVRGTYIPNLH 206

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
            +  N  LM       R L R  P      L          A+ Q + F+ V     
Sbjct: 207 IVPGNLELMEFEHDTPRALMRRAPG---DTLF---FARIGQAIAQAQNFYDVVVIDC 257


>gi|307594188|ref|YP_003900505.1| LAO/AO transport system ATPase [Vulcanisaeta distributa DSM 14429]
 gi|307549389|gb|ADN49454.1| LAO/AO transport system ATPase [Vulcanisaeta distributa DSM 14429]
          Length = 433

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 19/154 (12%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           + ELL +    D +    L  ++E               +   R HVI + G  G GK+T
Sbjct: 3   INELLERARNWDKAAIARLITLAEE--------GVEIPLNIQRRSHVIGITGPPGSGKST 54

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRS-------AAIDQLKIWADRTSADFVCSEIGSDAA 179
           +I  +++++     +V +   D               +++    R +             
Sbjct: 55  LIYTMARRI-PQDKRVAILTIDPSSPFTGGSFMGNRIRMQELTSRPNIYIRSMATRGIRG 113

Query: 180 ALAYEAFKQAQAKKV---DVLIIDTAGRLHNNSI 210
            L Y         +    D + I+T G   +++ 
Sbjct: 114 GLNYATIAAVNILEYASADYIFIETVGAGQSDTD 147


>gi|291520416|emb|CBK75637.1| Uridine kinase [Butyrivibrio fibrisolvens 16/4]
          Length = 554

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +GV     + E +   +    V  Q  +++ +  I ++   ++   +  F      +++ 
Sbjct: 245 MGVPTVGALNEVIAKGKIRDLVLSQEAIFERN--IGELAGKIASNNDVKF------VMMA 296

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           G +  GKTT   KLS ++   G +      D F
Sbjct: 297 GPSSSGKTTFSHKLSAQLRALGCEPHPLPLDDF 329


>gi|302533783|ref|ZP_07286125.1| nodulation ABC transporter NodI [Streptomyces sp. C]
 gi|302442678|gb|EFL14494.1| nodulation ABC transporter NodI [Streptomyces sp. C]
          Length = 308

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 13/118 (11%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           ++  L+ +     +         R  V  V+G NG GKTT +       +  G       
Sbjct: 8   EIRGLVKRYGPKTAVDGLDLTVPRGSVTAVLGPNGAGKTTTV------ETCEGYHRP--D 59

Query: 147 GDTFRSAAID---QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
             T R   +D   Q +    R         + S A A+  E  +       D L +DT
Sbjct: 60  AGTVRVLGLDPVAQAERLRPRVGVMLQSGGVYSGARAV--EMLRHMAKLYADPLDVDT 115


>gi|225389724|ref|ZP_03759448.1| hypothetical protein CLOSTASPAR_03472 [Clostridium asparagiforme
           DSM 15981]
 gi|225044217|gb|EEG54463.1| hypothetical protein CLOSTASPAR_03472 [Clostridium asparagiforme
           DSM 15981]
          Length = 581

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 15/162 (9%)

Query: 116 VVGVNGVGKTTVIGKLSKKM-------SDAGLKVMLAAGDT-FRSAAIDQLKIWADRTSA 167
           +VG +G GK+T+   L++         +  G  +     D+  R+ A+    ++    + 
Sbjct: 369 IVGPSGSGKSTLCALLARFYDVDQGRITVGGYDIRKMTCDSLLRNIAMVFQNVYLFHDTI 428

Query: 168 D-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN----NSILMAGIGKMIRVL 222
              +       A      A K A+    D ++    G         S L  G  + I + 
Sbjct: 429 RNNIRFGRPDAAEEDVIAAAKAAR--CHDFIMALPQGYDTIVGEGGSNLSGGEKQRISIA 486

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           + L   AP  +L    A+       +++   +       I+T
Sbjct: 487 RCLLKDAPIIILDEATASVDPENEHEIQEALSALVRGKTIIT 528


>gi|156086300|ref|XP_001610559.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154797812|gb|EDO06991.1| hypothetical protein BBOV_IV006320 [Babesia bovis]
          Length = 185

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 9/157 (5%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           +    +P +I+V+G    GKT    +L+ K+    +   +   D+ + A I    +    
Sbjct: 19  FKGDVKPKIIVVLGPTATGKTEASIELALKLKTHNITAEIINADSMQIAEIHANNVLPII 78

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                +  E      ++     + ++    D     TA       +    + ++   L +
Sbjct: 79  VGGTNLYIEGL-LWPSILDMRLQNSETT--DAYHGMTAHNNRITPLTGKSVVQLYDELMK 135

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
           LDP        V+ A    N  +++     V  T+G+
Sbjct: 136 LDPQR------VMAAMLHCNDRKRITRSLDVIKTSGM 166


>gi|145222984|ref|YP_001133662.1| LAO/AO transport system ATPase [Mycobacterium gilvum PYR-GCK]
 gi|315443446|ref|YP_004076325.1| LAO/AO transporter ATPase [Mycobacterium sp. Spyr1]
 gi|145215470|gb|ABP44874.1| LAO/AO transport system ATPase [Mycobacterium gilvum PYR-GCK]
 gi|315261749|gb|ADT98490.1| LAO/AO transport system ATPase [Mycobacterium sp. Spyr1]
          Length = 303

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 41/192 (21%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA-------------GDTFRSAAIDQLK 159
           V+ + G  G GK+T +G L       G++V + A             GD  R AA     
Sbjct: 45  VVGITGPPGAGKSTTVGALVGSYRSVGMRVAVLAVDPSSPYSGGALLGDRIRMAA----- 99

Query: 160 IWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
              +                 LA     A     A   D++I++T G   +         
Sbjct: 100 -HINDPDVLIRSVAARGHLGGLAAAVPAAITLLSALGYDLVILETVGVGQSE-------- 150

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF-HAVAGTTGLIMTKMDGTARGGGL 275
             I +    DP        V+      +A++  +     VA    +++ K D       +
Sbjct: 151 --IEIAAVADPT------VVILNPGAGDAVQAAKAGLLEVADI--VVVNKADRDGADQTV 200

Query: 276 IPIVVTHKIPVY 287
             +     +P+ 
Sbjct: 201 RDLRAETDVPIL 212


>gi|145589094|ref|YP_001155691.1| arginine/ornithine transport system ATPase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047500|gb|ABP34127.1| LAO/AO transport system ATPase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 341

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 25/158 (15%)

Query: 67  VEELLTKRYAKDV------SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +  L  +R    V      +         ++++ +L    K F    S         GV 
Sbjct: 16  IASLKQRRALAKVITLLESTRLDHRKRADDVLNTLLPKTGKSFRLGIS---------GVP 66

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRTSA-------DFV 170
           GVGK+T+I  L   + + G +V + A D   +    +I   K   +R S           
Sbjct: 67  GVGKSTLIESLGLYLIEKGHRVAVLAIDPTSSLSGGSILGDKTRMERLSVLDNAFIRPSP 126

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            S      A    EA   A+A   D++I++T G   + 
Sbjct: 127 SSLTLGGVAEKTREAMLVAEAAGFDIIIVETVGVGQSE 164


>gi|40253767|dbj|BAD05706.1| putative RGH1A [Oryza sativa Japonica Group]
 gi|125602337|gb|EAZ41662.1| hypothetical protein OsJ_26198 [Oryza sativa Japonica Group]
          Length = 981

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 22/127 (17%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +R+L K  +    K K+   +I  + RR+++ ++E          +    A+  V+ ++T
Sbjct: 99  LRRLRKKMSKLFKKAKDR-REIAGAIRRINEKLQE----------VATRRARYRVDSIVT 147

Query: 73  KRYAK---DVSVQRVLYDVSELI------HKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           K       D  +Q +    +ELI       K++  LS   +   S +  +I +VG  G+G
Sbjct: 148 KPAGPVSIDPRIQALYKRSTELIGVDGPMDKIINMLSPRNDIHLSDKKKIISIVGFGGLG 207

Query: 124 KTTVIGK 130
           KTT + K
Sbjct: 208 KTT-LAK 213


>gi|326389783|ref|ZP_08211348.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994265|gb|EGD52692.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 510

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 59/173 (34%), Gaps = 21/173 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           KDV+    + D  ++I   +    K +N   +  P  IL  G  G GKT     L+  ++
Sbjct: 84  KDVAGLDEVIDELKVIIDFMTNTEK-YNKMGAKIPKGILFYGPPGTGKT----LLATALA 138

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                  ++A  +                  +       S   AL  +A K A +    +
Sbjct: 139 GETNSTFISASGS---------------EFVEKYVGVGASRIRALFAKAKKSAPSIIF-I 182

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             ID  G   N          + ++L  +D    +  + V+ AT   + L + 
Sbjct: 183 DEIDAVGTKRNTDNNSEKDQTLNQLLVEMDGFNSNEGIIVIGATNRIDMLDEA 235


>gi|325523419|gb|EGD01744.1| ATPase [Burkholderia sp. TJI49]
          Length = 929

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 16/148 (10%)

Query: 106 DFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWAD 163
           D +    V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK    
Sbjct: 554 DPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMVTINMSEYQEAHSVSGLK---- 608

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   S  G           +  +     V+++D   + H + + M         + 
Sbjct: 609 -------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGTMD 661

Query: 224 RLDPHAPH--SVLQVLDATTGQNALRQV 249
             +       + L +L +  G  A+ Q 
Sbjct: 662 DAEGREIDFRNTLIILTSNVGSAAVMQA 689


>gi|312134563|ref|YP_004001901.1| ATP-dependent metalloprotease ftsh [Caldicellulosiruptor owensensis
           OL]
 gi|311774614|gb|ADQ04101.1| ATP-dependent metalloprotease FtsH [Caldicellulosiruptor owensensis
           OL]
          Length = 616

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 54/184 (29%), Gaps = 24/184 (13%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L  K    DV+      +    +   L    K      +  P  IL+VG  G GKT 
Sbjct: 158 IQDLKKKVTFADVAGADEEKEELREVIDFLKNPRKYIELG-ARIPKGILLVGPPGTGKT- 215

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
               L+K ++                A +    I        FV                
Sbjct: 216 ---LLAKAVAGE--------------AGVPFFSISGSDFVEMFVGVGAARVRDLFDQAKR 258

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                  +D   ID  GR     +          + ++L  +D    +  + V+ AT   
Sbjct: 259 NAPCVVFIDE--IDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFGTNEGIIVMAATNRP 316

Query: 244 NALR 247
           + L 
Sbjct: 317 DILD 320


>gi|291402487|ref|XP_002717591.1| PREDICTED: RH2K1-like [Oryctolagus cuniculus]
          Length = 494

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 13  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRRKAVKSYKSY------ 66

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 67  DFFRHDNEEAMKIRKQCALVALEDVKA 93


>gi|281208336|gb|EFA82512.1| hypothetical protein PPL_04200 [Polysphondylium pallidum PN500]
          Length = 968

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 11/95 (11%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVRE---ELEDLLIR-- 55
            S++ +   S     ++ K    T+  +K  I +  S+  +D+ ++E   ++ED +I   
Sbjct: 117 FSSEDMIKPSDKIFTRVKKTLGKTNKIIKHTILE--SNHLIDEKIKESNKKIEDTIIGGL 174

Query: 56  ---SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
              + +G+      VE    +R  K  S +R ++ 
Sbjct: 175 EQVAGVGIKAVDA-VENFNKERIEKIESHERSIWI 208


>gi|260171820|ref|ZP_05758232.1| arginine/ornithine transport system ATPase [Bacteroides sp. D2]
 gi|315920132|ref|ZP_07916372.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694007|gb|EFS30842.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 363

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 40/223 (17%)

Query: 63  AQKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
             + VE ++       ++ V++   +    + + + ++    PF+ +       I + GV
Sbjct: 40  VAEFVEGIVKGDVTILSQAVTLVESVKPEHQAVSQEIIEKCLPFSGNSVR----IGISGV 95

Query: 120 NGVGKTTVI-----------GKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            G GK+T I           GKL+    D  +        GD  R   ++QL +      
Sbjct: 96  PGAGKSTSIDVFGLHVLEKGGKLAVLAIDPSSERSKGSILGDKTR---MEQLSVHPKSFI 152

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                +      A    E     +A   D + ++T G   + +                 
Sbjct: 153 RPSPSAGSLGGVARKTRETIILCEAAGFDKIFVETVGVGQSETA---------------- 196

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            H+      ++  +   + L+ ++         G+++ K DG 
Sbjct: 197 VHSMVDFFLLIQLSGTGDELQGIKRGIMEMA-DGIVINKADGD 238


>gi|225620270|ref|YP_002721527.1| ATP-dependent metalloprotease FtsH [Brachyspira hyodysenteriae WA1]
 gi|225215089|gb|ACN83823.1| ATP-dependent metalloprotease FtsH [Brachyspira hyodysenteriae WA1]
          Length = 698

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           K   KDV   +   +  + + + L   SK F    +  P  +L+VG  G GKT  + K
Sbjct: 173 KVTFKDVEGCKEAKEELQEVVQFLKDASK-FTKLGAKIPKGVLLVGPPGTGKTL-LAK 228


>gi|239623906|ref|ZP_04666937.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521937|gb|EEQ61803.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 252

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 109 HRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVML 144
             P+ + +  G  G GKTT++ KL+ +    G  V  
Sbjct: 26  RNPYKLYMCFGKKGSGKTTLMTKLALQYQKKGWNVYC 62


>gi|182414548|ref|YP_001819614.1| ATP-dependent metalloprotease FtsH [Opitutus terrae PB90-1]
 gi|177841762|gb|ACB76014.1| ATP-dependent metalloprotease FtsH [Opitutus terrae PB90-1]
          Length = 671

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++     K    DV+      +    + + L    K F       P  IL+VG  G GK
Sbjct: 174 KLLTRDRDKVTFADVAGCDEAKEEVSEVVEFLKD-PKKFTKMGGKIPKGILMVGPPGTGK 232

Query: 125 TTVIGK 130
           T  + K
Sbjct: 233 TL-LAK 237


>gi|325283257|ref|YP_004255798.1| hypothetical protein Deipr_1025 [Deinococcus proteolyticus MRP]
 gi|324315066|gb|ADY26181.1| hypothetical protein Deipr_1025 [Deinococcus proteolyticus MRP]
          Length = 210

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 17/104 (16%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P + L+VG+ G GKTT    L++++  AG           R    + +K        D +
Sbjct: 51  PTLHLLVGLPGAGKTT----LARRLERAGAL---------RLTPDEWMK---PLFGVDDI 94

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
             + G     L +    +A    VDV++ D          L   
Sbjct: 95  DGKRGLLERELLWSVAHRALELGVDVVL-DYGLWSPQERGLYRE 137


>gi|319957397|ref|YP_004168660.1| atpase-like, para/mind [Nitratifractor salsuginis DSM 16511]
 gi|319419801|gb|ADV46911.1| ATPase-like, ParA/MinD [Nitratifractor salsuginis DSM 16511]
          Length = 372

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 98/276 (35%), Gaps = 48/276 (17%)

Query: 60  VAVAQKIV---EELLTKRYAKDVSVQRVLYDVSELIHKMLMPL------SKPFNWDFSHR 110
           V V  +I    +E+  +   KD+  +       ++  +++ P       +     + + +
Sbjct: 39  VKVTIEITSSADEVKMQLI-KDIETELAKAGAEDVQVEIIAPKKPVERSNSMTGKNIAPQ 97

Query: 111 PHVILVV--GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
               L++  G  GVGK+T    L+  M+  G KV L   D +                 +
Sbjct: 98  VKDFLMISSGKGGVGKSTTAVNLAIAMAMQGKKVGLLDADIYGPN-------IPRMMGIE 150

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN-NSILMAGIGKMIRVLKR--L 225
            V  E       +     K  +A  ++V+   + G L      L+     +++ +++   
Sbjct: 151 NVKPE-------VVGNKVKPIEAYGIEVM---SMGSLMEPGQSLIWRGAMIMKAIEQFLR 200

Query: 226 DPHAPHSVLQVLDA--TTGQNALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIPIV 279
           D       + V+D    TG   L   +     AG T  + T     +D + R    + + 
Sbjct: 201 DILWSDLDVLVIDMPPGTGDAQLTLAQSVPVTAGVT--VTTPQEVSLDDSRR---SLDMF 255

Query: 280 VTHKIPVYFLGVGEGINDLE-PFVAKDFSAVITGCL 314
               IP+   GV E ++    P   K++   I G  
Sbjct: 256 QKLHIPIA--GVIENMSGFICPGDGKEYD--IFGMG 287


>gi|221066708|ref|ZP_03542813.1| cobalamin synthesis protein P47K [Comamonas testosteroni KF-1]
 gi|220711731|gb|EED67099.1| cobalamin synthesis protein P47K [Comamonas testosteroni KF-1]
          Length = 319

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 21/168 (12%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-----------TFRSAAIDQLKI 160
            V +V G  G GKTT    L++ +  AGL   +   +             RSA  D    
Sbjct: 7   PVWVVTGYLGSGKTT---LLNRWLRHAGLAHAVLIINEIGEVGLDDHILSRSA--DSAST 61

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS-ILMAGIGKMI 219
                                 + A  + +    D ++I+T G         +  +  ++
Sbjct: 62  LLANQCICCNGLPGLEGTLTELWWARLRRERPHFDTVVIETTGLAAPGPISQLFELVPLL 121

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           R    L  HA  + +       G  A  Q       A    ++ TK+D
Sbjct: 122 RERYVL--HAVVTTVSATAGCEGIEAQTQAREQLQAA--DTVVFTKVD 165


>gi|158312241|ref|YP_001504749.1| ABC transporter related [Frankia sp. EAN1pec]
 gi|158107646|gb|ABW09843.1| ABC transporter related [Frankia sp. EAN1pec]
          Length = 1264

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 56/182 (30%), Gaps = 13/182 (7%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------ 166
            + +VG +G GKTT    LS+    +   V +   D  R   +  L+             
Sbjct: 391 TVALVGRSGSGKTTAAALLSRFYDPSAGVVRVYGHDV-RDLTLTSLRGLIGVVGDDGLLF 449

Query: 167 -ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN---NSILMAGIGKMIRVL 222
                 +       A        A+A +VD    D             L    G+  RV 
Sbjct: 450 STSLWENIAYGRRDAPTATVLAAARASRVDEFATDLPEGYRTRVGERGLTLSGGQRQRVA 509

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
                 A   VL + DAT+  +A  + E+   +   T    T +    R    + +    
Sbjct: 510 IARAIVADTPVLVLDDATSAIDAEVEAEIHRELRTVTSTRTTLLIAHRR--ATLRLADRI 567

Query: 283 KI 284
            +
Sbjct: 568 GV 569


>gi|149203227|ref|ZP_01880197.1| probable chaperone [Roseovarius sp. TM1035]
 gi|149143060|gb|EDM31099.1| probable chaperone [Roseovarius sp. TM1035]
          Length = 375

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++++  +  A  +     L  + E++  +   +  P           IL  G  GVGKT 
Sbjct: 51  LDQVEAELRAAIIGQDESLEQLLEILKVVRADIGDP-----RKPLATILFCGPTGVGKTE 105

Query: 127 VIGKLSKKM 135
            +  L++ +
Sbjct: 106 TVRTLARAL 114


>gi|118102435|ref|XP_417979.2| PREDICTED: similar to
           6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           (6PF-2-K/Fru-2,6-P2ASE heart-type isozyme)
           (PFK-2/FBPase-2) [Gallus gallus]
          Length = 520

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +
Sbjct: 33  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTRVFNLGVYRREAVKSYKSY 86


>gi|327312853|ref|YP_004328290.1| phosphoribulokinase/uridine kinase family protein [Prevotella
           denticola F0289]
 gi|326944467|gb|AEA20352.1| phosphoribulokinase/uridine kinase family protein [Prevotella
           denticola F0289]
          Length = 555

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 11/121 (9%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
             + ++I   ++ +  +E      I   +G+       E +              L +VS
Sbjct: 220 SRLGELIRQDKMFEVFKEHHRWQGI---LGIKTVGDFNEAVKN-------GFSTDLINVS 269

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           E + +  +               V+L+ G +  GKTT   +LS ++  +G+K +  + D 
Sbjct: 270 EALQEKKISQIAD-TIASRKETKVVLIAGPSSSGKTTFCKRLSVQLLASGVKPVQISLDD 328

Query: 150 F 150
           +
Sbjct: 329 Y 329


>gi|312870440|ref|ZP_07730560.1| deoxyguanosine kinase [Lactobacillus oris PB013-T2-3]
 gi|311093997|gb|EFQ52321.1| deoxyguanosine kinase [Lactobacillus oris PB013-T2-3]
          Length = 210

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDA 138
           VI+  G+ GVGKTT+ GK+++ +   
Sbjct: 2   VIITAGMIGVGKTTLTGKIAEHLHTK 27


>gi|311105714|ref|YP_003978567.1| ABC transporter [Achromobacter xylosoxidans A8]
 gi|310760403|gb|ADP15852.1| ABC transporter family protein 35 [Achromobacter xylosoxidans A8]
          Length = 257

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           ++G NG GKTT+I  LS ++   G  V L A D  R+   +
Sbjct: 42  LIGPNGAGKTTLINLLSGELRPDGGAVRLGAADVSRATVQE 82


>gi|270291600|ref|ZP_06197820.1| deoxyguanosine kinase [Pediococcus acidilactici 7_4]
 gi|304384552|ref|ZP_07366898.1| deoxyguanosine kinase [Pediococcus acidilactici DSM 20284]
 gi|270279919|gb|EFA25757.1| deoxyguanosine kinase [Pediococcus acidilactici 7_4]
 gi|304328746|gb|EFL95966.1| deoxyguanosine kinase [Pediococcus acidilactici DSM 20284]
          Length = 219

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM 135
           VI+  G+ GVGKTT+ GK+++  
Sbjct: 2   VIITAGMIGVGKTTLTGKIAEYY 24


>gi|256846653|ref|ZP_05552109.1| MRP-family nucleotide-binding protein [Fusobacterium sp. 3_1_36A2]
 gi|294784362|ref|ZP_06749653.1| MRP-family nucleotide-binding protein [Fusobacterium sp. 3_1_27]
 gi|256717873|gb|EEU31430.1| MRP-family nucleotide-binding protein [Fusobacterium sp. 3_1_36A2]
 gi|294487934|gb|EFG35289.1| MRP-family nucleotide-binding protein [Fusobacterium sp. 3_1_27]
          Length = 257

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 96  LMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++    P   D  +  +VI ++ G  GVGK+TV   L+K++   G  V +   D
Sbjct: 1   MIQKDAPKVKDDKNIKNVIAVMSGKGGVGKSTVTTLLAKELRKKGYSVGVLDAD 54


>gi|229550812|ref|ZP_04439537.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus rhamnosus LMS2-1]
 gi|258538476|ref|YP_003172975.1| ABC transporter ATPase [Lactobacillus rhamnosus Lc 705]
 gi|229315808|gb|EEN81781.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus rhamnosus LMS2-1]
 gi|257150152|emb|CAR89124.1| ABC transporter, ATPase component [Lactobacillus rhamnosus Lc 705]
          Length = 515

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           +++L DV++L+     PL +P N+  + +  VI   G NGVGK+T++  +   +   G  
Sbjct: 318 RQMLVDVNDLVVGYDRPLLQPINFSVA-KDQVIAFEGFNGVGKSTLLKTILGLLPALGGS 376

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADF 169
           V +A   TF     +Q   W     +  
Sbjct: 377 VEIADNVTF--GYYEQELHWDQPKQSPV 402


>gi|259907036|ref|YP_002647392.1| ATP-dependent metalloprotease [Erwinia pyrifoliae Ep1/96]
 gi|224962658|emb|CAX54113.1| Cell division protease FtsH [Erwinia pyrifoliae Ep1/96]
 gi|283476832|emb|CAY72670.1| cell division protein FtsH [Erwinia pyrifoliae DSM 12163]
 gi|310766248|gb|ADP11198.1| ATP-dependent metalloprotease [Erwinia sp. Ejp617]
          Length = 644

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|169629794|ref|YP_001703443.1| putative kinase ArgK [Mycobacterium abscessus ATCC 19977]
 gi|169241761|emb|CAM62789.1| Putative kinase ArgK [Mycobacterium abscessus]
          Length = 323

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 19/141 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + + Q       +L+ ++            +         GV GVGK+T I  L   + +
Sbjct: 27  ESTRQDHRSQAQQLLLELSPEGGNALRVGIT---------GVPGVGKSTTIEALGMYLIE 77

Query: 138 AGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
            G +V + A D  + R+          + +L +  D        S      A    E   
Sbjct: 78  QGHRVAVLAVDPSSTRTGGSILGDKTRMGRLSVHPDAYIRPSPTSGTLGGVAKATRETVV 137

Query: 188 QAQAKKVDVLIIDTAGRLHNN 208
             +A   DV++I+T G   + 
Sbjct: 138 LLEAAGFDVILIETVGVGQSE 158


>gi|315225283|ref|ZP_07867100.1| mrp/Nbp35 family ATP-binding protein [Capnocytophaga ochracea
           F0287]
 gi|314944966|gb|EFS96998.1| mrp/Nbp35 family ATP-binding protein [Capnocytophaga ochracea
           F0287]
          Length = 373

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 21/114 (18%)

Query: 58  IGVAVAQKIV---EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK------------P 102
           +     Q IV   +E++      + S+Q       E++  +   +++            P
Sbjct: 25  VDSGAVQNIVVFGDEVVVDVVINNPSLQAKKRTEVEVMKAIHGEVNEKAKVVVNVKVIAP 84

Query: 103 FNWDFSHRP-----HVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
              +   +P     ++I V  G  GVGK+TV   L+  ++  G KV +   D +
Sbjct: 85  EVTEIKGKPIPGIQNIIAVASGKGGVGKSTVTANLATALAKMGFKVGVLDADVY 138


>gi|262368240|ref|ZP_06061569.1| ClpV1 family type VI secretion ATPase [Acinetobacter johnsonii
           SH046]
 gi|262315918|gb|EEY96956.1| ClpV1 family type VI secretion ATPase [Acinetobacter johnsonii
           SH046]
          Length = 895

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 73/210 (34%), Gaps = 38/210 (18%)

Query: 45  VREELEDLL-IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
           V +E++ +L + S            +L  +   +D ++ +++  +           SK  
Sbjct: 560 VNDEIKQILSLES------------KLAERVMGQDSALHQLVQGIK---------TSKAK 598

Query: 104 NWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
             D +    V ++VG +GVGKT T +  L+ ++      ++              +  + 
Sbjct: 599 LDDPNKPQGVFMLVGPSGVGKTETALA-LASELYGGESHLITIN-----------MSEYQ 646

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           +  +   +                 +A  +    V+++D   + HN+   +         
Sbjct: 647 EAHTVSSLKGAPPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHNDVQELFYQVFDKGT 706

Query: 222 LKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           L+  +       +   +L +  G NA+ Q 
Sbjct: 707 LEDGEGRIIDFKNTTIILTSNVGSNAIMQA 736


>gi|262196373|ref|YP_003267582.1| adenylylsulfate kinase [Haliangium ochraceum DSM 14365]
 gi|262079720|gb|ACY15689.1| adenylylsulfate kinase [Haliangium ochraceum DSM 14365]
          Length = 202

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            D   +  V+   G++G GK+T+  +++  +  AG  V L  GD  R+
Sbjct: 1   MDLVKKGFVLWFTGLSGAGKSTLSARVAAHLQAAGCPVELLDGDEVRT 48


>gi|257460706|ref|ZP_05625807.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Campylobacter gracilis RM3268]
 gi|257442037|gb|EEV17179.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Campylobacter gracilis RM3268]
          Length = 162

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           VI   G +  GKTT+I K++K    +GL++ +   D
Sbjct: 5   VIAFSGPSNSGKTTLICKIAKIFIASGLRIAIVKHD 40


>gi|255092757|ref|ZP_05322235.1| putative ATP-binding protein [Clostridium difficile CIP 107932]
          Length = 266

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++ G  GVGK+TV   L+ K++  G KV +   D
Sbjct: 35  VMSGKGGVGKSTVTALLANKLNKMGYKVGILDSD 68


>gi|149707832|ref|XP_001492489.1| PREDICTED: similar to
           6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           (6PF-2-K/Fru-2,6-P2ASE heart-type isozyme)
           (PFK-2/FBPase-2) [Equus caballus]
          Length = 517

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +
Sbjct: 36  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRRKAVKSYKSY 89


>gi|221134248|ref|ZP_03560553.1| ATP-dependent metalloprotease FtsH [Glaciecola sp. HTCC2999]
          Length = 645

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 52/169 (30%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DVSEL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 165 DEAKEDVSELVDFLRDP--SKFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKV 218

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 219 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKSAPCIIF-IDEIDA 262

Query: 202 AGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR     +          + ++L  +D    H  + V+ AT   + L 
Sbjct: 263 VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGHEGIIVIAATNRPDVLD 311


>gi|86607507|ref|YP_476269.1| FtsH family metalloprotease [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556049|gb|ABD01006.1| metalloprotease, ATP-dependent, FtsH family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 640

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 27/184 (14%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +          + +  E + +++  L KP  F    +  P  +L+VG  G GKT    
Sbjct: 163 EAKTGVKFDDVAGIEEAKEELQEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKT---- 218

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            L+K ++        +   +                  +       S    L  +A + A
Sbjct: 219 LLAKAIAGEAGVPFFSLSGS---------------EFVEMFVGVGASRVRDLFKKAKENA 263

Query: 190 QAK-KVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                +D   ID  GR                + ++L  +D    ++ + V+ AT   + 
Sbjct: 264 PCIVFIDE--IDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRPDV 321

Query: 246 LRQV 249
           L   
Sbjct: 322 LDAA 325


>gi|71028972|ref|XP_764129.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351083|gb|EAN31846.1| hypothetical protein, conserved [Theileria parva]
          Length = 680

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 61/188 (32%), Gaps = 27/188 (14%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV     + +  E + + L   SK         P  IL+ G  G GKT     +++ ++ 
Sbjct: 210 DVKGCDEVREELEEMIEYLKEPSKFAKLGAKL-PKGILLAGSPGTGKT----LIARALAS 264

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                          A +  +          FV             + FK A++    ++
Sbjct: 265 E--------------AGVPFIHASGSEFEEMFVGVGARRI-----RDLFKTAKSISPCIV 305

Query: 198 II---DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
            I   D  G   ++    +    + ++L  LD  A H  + VL AT    +L    +   
Sbjct: 306 FIDELDAVGSRRSSMDHNSVRMTLNQLLVELDGFAKHEGIVVLCATNFPESLDPALVRPG 365

Query: 255 VAGTTGLI 262
               T  I
Sbjct: 366 RLDKTVYI 373


>gi|303240098|ref|ZP_07326619.1| AAA ATPase central domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592367|gb|EFL62094.1| AAA ATPase central domain protein [Acetivibrio cellulolyticus CD2]
          Length = 540

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 40/193 (20%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE---- 69
             KL+ G +       + I DI      +                 VA++   ++E    
Sbjct: 205 FSKLSSGLSK------KAIKDIKLKAESE----------------NVAISFDFIKEKKHS 242

Query: 70  LLTKRYAKDVSVQ------RVLYDVSELIHKMLMPLSKPF-NWDFSHRPHVILVVGVNGV 122
           +L K Y   +           +  + +  + +L  + KP  N D    P  IL+ G +G 
Sbjct: 243 VLKKEYGDVLEFIYPEISFEDVGGMEKAKNYLLKNIVKPIKNGDLRRVPMGILLCGPSGT 302

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKT ++  L+     +G   +    D  R     Q    +++     +          + 
Sbjct: 303 GKTLLVNALA---KSSGFNCVKI--DMSRILG--QYVGESEKNFKKCLLGAQSQQPVIVF 355

Query: 183 YEAFKQAQAKKVD 195
            +    A  +  D
Sbjct: 356 VDEIDTAFRRGGD 368


>gi|300726375|ref|ZP_07059827.1| putative conjugative transposon protein TraA [Prevotella bryantii
           B14]
 gi|299776400|gb|EFI72958.1| putative conjugative transposon protein TraA [Prevotella bryantii
           B14]
          Length = 220

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/112 (11%), Positives = 36/112 (32%), Gaps = 3/112 (2%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK--IWADRTSADFVCSEIGSDA 178
           GVGK+T+    +  ++     V +   D  ++ A  + K     +     +   E     
Sbjct: 15  GVGKSTLCILFANYLAYKKQDVCIIDTDLQKTIAGQRTKDLQIFEENDMPYEVQEFDVQD 74

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +  +    A       ++ D+ G +  + ++   +     ++        
Sbjct: 75  PKMMKQLMDSASEVDG-YVLFDSPGNVGEDGLVPMFVNADAIIIPYEYEDKC 125


>gi|229552546|ref|ZP_04441271.1| cbxX/cfqX family protein [Lactobacillus rhamnosus LMS2-1]
 gi|229314098|gb|EEN80071.1| cbxX/cfqX family protein [Lactobacillus rhamnosus LMS2-1]
          Length = 869

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 51/179 (28%), Gaps = 37/179 (20%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G+   +  V +L+ +              V + +   L   +KP         + ++  
Sbjct: 612 VGLNSVKAFVNDLVKQVK------------VDQALQDKLPDATKPT--------YHMVFA 651

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL---------KIWADRTSAD 168
           G  G GKTTV   +++   + G+       +  R   + Q          K   D     
Sbjct: 652 GPPGTGKTTVARLIAQLFYNLGILPKDTVSEVARPDLVGQYIGQTAQKTGKAIRDAMGGV 711

Query: 169 FVCSEIGSDAA-------ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
               E    +          A E F        D  I   AG   N+          +R
Sbjct: 712 LFVDEAYQLSQGSENDFGKEAIETFITELENNRDKFIAIFAG-YTNDMNDFLEANPGLR 769


>gi|158421582|ref|YP_001527809.1| ParA-like chromosome partition protein [Deinococcus geothermalis
           DSM 11300]
 gi|158342825|gb|ABW35111.1| ParA-like chromosome partition protein [Deinococcus geothermalis
           DSM 11300]
          Length = 261

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTF-RSAAIDQLKIWADRTSADFVCSEIGSDA- 178
           GVGKTT    L+  ++  GL+++L   D     A    L+   D +       +   D  
Sbjct: 12  GVGKTTTAVHLAHALARQGLRILLVDTDGQGHCAIYLGLERRGDLSHVLLRTRQDTDDPQ 71

Query: 179 --AALAYEAFKQAQAKKVDVLIID-----TAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                     +      VD++  D       GR++  ++    + + +  ++     A  
Sbjct: 72  RRYEPVARFIRPNVRPGVDLISCDPSITLAEGRINGEAMRELRLARRLAEVQDRYDVALI 131

Query: 232 SV 233
            V
Sbjct: 132 DV 133


>gi|90420998|ref|ZP_01228902.1| carbohydrate kinase, thermoresistant gluconokinase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334776|gb|EAS48552.1| carbohydrate kinase, thermoresistant gluconokinase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 180

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            R   ++V+G  GVGKTT    L++ ++        A  D F  AA
Sbjct: 7   DRATSLVVMGPAGVGKTTTAAGLAEMLAW-----PYAEADEFHPAA 47


>gi|3290203|gb|AAC73064.1| unknown [Fremyella diplosiphon Fd33]
          Length = 488

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 45/90 (50%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           +LV G +GVGKTT+I +++++++    +  ++   ++R+  + QL +    T        
Sbjct: 47  VLVYGPSGVGKTTMIRQIARRLNAPQTEDYVSNDSSYRNGYVPQLPLLLIETRPPDSGVF 106

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
             +D    A +   +   ++  ++ IDT+ 
Sbjct: 107 NRTDYYRTALKLLNEPFYERRSIVDIDTSE 136


>gi|85058597|ref|YP_454299.1| hypothetical protein SG0619 [Sodalis glossinidius str. 'morsitans']
 gi|84779117|dbj|BAE73894.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 209

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I+++G    G GK+T    ++ ++   G  V+L   D  R          +   S     
Sbjct: 2   IILIGSQKGGCGKSTTCVNIASELVRQGKDVVLVDAD--RQG------TSSTWISDRNSA 53

Query: 172 SEIGSDAAALAYEAFKQA---QAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            E+ +  +   ++  ++       + D +++DTAGR             +I
Sbjct: 54  GELDTIHSIQKFDNIRETLLDLKARYDYVVVDTAGRDSREVRTGMTAADII 104


>gi|116671764|ref|YP_832697.1| lipopolysaccharide biosynthesis [Arthrobacter sp. FB24]
 gi|116611873|gb|ABK04597.1| lipopolysaccharide biosynthesis [Arthrobacter sp. FB24]
          Length = 529

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 10/167 (5%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-WDFSHRPHVILVVG-VNGVGKTT 126
            L  K    D      L+D    + + L  L    +  D    P +I+V   +   GK+T
Sbjct: 257 RLDEKSTILDAGAAAQLHDAGGAMAEALRELRTNLSFLDVDQPPRIIVVTSSMQAEGKST 316

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           V   L+  M+ AG  V++  GD  R   +D   +       D +      +     + A 
Sbjct: 317 VTANLAVTMAAAGENVVVVDGDLRRPTLVDVFNLVPGVGVTDVLTGTAELEDVLQPWGAL 376

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                          +GR+  N   + G   M  +L  L  +A   +
Sbjct: 377 PNLSVLG--------SGRIPPNPSELLGSKAMKNMLNALAENAIVLI 415


>gi|332030603|gb|EGI70291.1| Nucleoside-triphosphatase C1orf57-like protein [Acromyrmex
           echinatior]
          Length = 198

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                + RP  +L+ G  G+GKTTV  K++  +   G +      +  R
Sbjct: 1   METSGASRPLHVLLTGPPGIGKTTVCKKIASALEKKGSRFDGFYTEEVR 49


>gi|321466184|gb|EFX77181.1| hypothetical protein DAPPUDRAFT_321711 [Daphnia pulex]
          Length = 1626

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 26   LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK----DVSV 81
              + E +  + +   +D    +ELE  LI ++      +  +E  + +R  +     V+ 
Sbjct: 1533 SSVNEILISLNNMGNIDTAALDELERKLIIAE------RDFIESDIERRIEEMRTARVTQ 1586

Query: 82   QRVLYDVSELIHKMLMPLS 100
             + + D  E + ++ + + 
Sbjct: 1587 NQWVRDYEEELARLRLEVD 1605


>gi|320540171|ref|ZP_08039826.1| putative protease, ATP-dependent zinc-metallo [Serratia symbiotica
           str. Tucson]
 gi|320029837|gb|EFW11861.1| putative protease, ATP-dependent zinc-metallo [Serratia symbiotica
           str. Tucson]
          Length = 641

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVSELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|315609126|ref|ZP_07884095.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249196|gb|EFU29216.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 209

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            D  H+P +I++ G NG GKTT+  K+   
Sbjct: 2   TDRLHKPVLIVIAGPNGSGKTTITSKILHH 31


>gi|311265146|ref|XP_003130514.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           2-like [Sus scrofa]
          Length = 517

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 36  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 89

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 90  DFFRHDNEEAMKIRKQCALVALEDVKA 116


>gi|302829406|ref|XP_002946270.1| hypothetical protein VOLCADRAFT_102865 [Volvox carteri f.
           nagariensis]
 gi|300269085|gb|EFJ53265.1| hypothetical protein VOLCADRAFT_102865 [Volvox carteri f.
           nagariensis]
          Length = 1041

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             + +P VILV+G+ G GKTT+I +++  +        +   D
Sbjct: 21  SHAPKPTVILVIGMAGSGKTTLIQRINSHLHATRRNGYIINMD 63


>gi|296230627|ref|XP_002760785.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           isoform 1 [Callithrix jacchus]
          Length = 505

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 35  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 88

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 89  DFFRHDNEEAMKIRKQCALVALEDVKA 115


>gi|281337926|gb|EFB13510.1| hypothetical protein PANDA_018756 [Ailuropoda melanoleuca]
          Length = 477

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 7   TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 60

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 61  DFFRHDNEEAMKIRKQCALVALEDVKA 87


>gi|260505971|gb|ACX42383.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase-2 variant 7
           [Rattus norvegicus]
          Length = 197

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 38  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 91

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 92  DFFRHDNEEAMKIRKQCALVALEDVKA 118


>gi|218887478|ref|YP_002436799.1| arsenite-activated ATPase ArsA [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758432|gb|ACL09331.1| arsenite-activated ATPase ArsA [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 579

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 30/140 (21%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD----------------------- 148
            VI  +G  GVGKTT+   ++  ++  G KV L + D                       
Sbjct: 327 KVIFTMGKGGVGKTTIAASIALGLARKGAKVHLTSTDPASDLQTILKNPANITLSRIDEK 386

Query: 149 ----TFRSAAIDQLKIWADRTSADFVCSE---IGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                +R   +D       +    ++  +     +   A+     +  +    +++IIDT
Sbjct: 387 EELARYRKEVLDTAMQVMSKDDVAYIEEDLRSPCTQEIAVFRAFAEIVEKAGEEIVIIDT 446

Query: 202 AGRLHNNSILMAGIGKMIRV 221
           A   H   +L A       V
Sbjct: 447 APTGHTLLLLDATQSHHKEV 466


>gi|126306958|ref|XP_001372764.1| PREDICTED: similar to solute carrier family 24
           (sodium/potassium/calcium exchanger), member 3,
           [Monodelphis domestica]
          Length = 540

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 59  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 112

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 113 DFFRHDNEEAMKIRKQCALVALEDVKA 139


>gi|197099092|ref|NP_001127057.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Pongo
           abelii]
 gi|75054640|sp|Q5NVT1|F262_PONAB RecName: Full=6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           2; Short=6PF-2-K/Fru-2,6-P2ase 2; Short=PFK/FBPase 2;
           AltName: Full=6PF-2-K/Fru-2,6-P2ase heart-type isozyme;
           Includes: RecName: Full=6-phosphofructo-2-kinase;
           Includes: RecName: Full=Fructose-2,6-bisphosphatase
 gi|56403556|emb|CAI29582.1| hypothetical protein [Pongo abelii]
          Length = 530

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 35  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 88

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 89  DFFRHDNEEAMKIRKQCALVALEDVKA 115


>gi|3090421|emb|CAA06606.1| 6-phosphofructo-2-kinase [Homo sapiens]
          Length = 505

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 35  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 88

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 89  DFFRHDNEEAMKIRKQCALVALEDVKA 115


>gi|118378528|ref|XP_001022439.1| Cell division protein [Tetrahymena thermophila]
 gi|89304206|gb|EAS02194.1| Cell division protein [Tetrahymena thermophila SB210]
          Length = 1990

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 66/204 (32%), Gaps = 28/204 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           ++I++ +   + +  V  Q+        I   +  L +  + + ++    I+VVG +G G
Sbjct: 90  EEIIQHIQASQNSNVVQNQQ--------ISSEIRNLQQQIHEEHNNVNLNIMVVGESGTG 141

Query: 124 KTTVIGKLSKK---MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           KTT I               + +L +            K+            E+  +   
Sbjct: 142 KTTFINTFLHYDKRFKFQKKEELLFS------------KVVEHTCKIYSYIFELQMNTQK 189

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
                 KQ Q  +  + +IDT G     S          +++ +   H         ++ 
Sbjct: 190 D----IKQDQDIRYQLQMIDTLGYGEKLSQEKWYKLVKQQIINKFGLHEQMEQSL-FNSE 244

Query: 241 TGQNALRQVEMFHAVAGTTGLIMT 264
             QN L  ++         G  +T
Sbjct: 245 VHQNKLLYLQKEKKFQDKRGDTLT 268


>gi|73960683|ref|XP_537134.2| PREDICTED: similar to
           6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           (6PF-2-K/Fru-2,6-P2ASE heart-type isozyme)
           (PFK-2/FBPase-2) [Canis familiaris]
          Length = 518

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 37  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 90

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 91  DFFRHDNEEAMKIRKQCALVALEDVKA 117


>gi|28210940|ref|NP_781884.1| ribosomal biogenesis GTPase [Clostridium tetani E88]
 gi|28203379|gb|AAO35821.1| GTP-binding protein [Clostridium tetani E88]
          Length = 298

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 20/132 (15%)

Query: 22  ASTSLKLKEGIT------DIISSRRLDDGVREELEDL---------LIRSDIGVA-VAQK 65
           A T  +LKE +       +I  +R +      E+E++         L +SD+G   V  +
Sbjct: 28  AKTRRELKENLKMVDAIIEIRDARIVKSSANPEIENICGNKPRIILLNKSDLGEEKVTNE 87

Query: 66  IVEELL---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD-FSHRPHVILVVGVNG 121
            ++ L    TK  A +      +  +   I  +L   ++        +  + ++VVG+  
Sbjct: 88  WIKALSGENTKVIAINSLKDSGMKKIKNAIDDLLKEKTEKLKAKGLKNIVNRVMVVGIPN 147

Query: 122 VGKTTVIGKLSK 133
           VGK+T I +++K
Sbjct: 148 VGKSTFINRMAK 159


>gi|85058349|ref|YP_454051.1| ATP-dependent metalloprotease [Sodalis glossinidius str.
           'morsitans']
 gi|84778869|dbj|BAE73646.1| cell division protein [Sodalis glossinidius str. 'morsitans']
          Length = 643

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEELSELVDYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|64762406|ref|NP_006203.2| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 isoform a
           [Homo sapiens]
 gi|332811761|ref|XP_001165997.2| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           isoform 7 [Pan troglodytes]
 gi|12643333|sp|O60825|F262_HUMAN RecName: Full=6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           2; Short=6PF-2-K/Fru-2,6-P2ase 2; Short=PFK/FBPase 2;
           AltName: Full=6PF-2-K/Fru-2,6-P2ase heart-type isozyme;
           Includes: RecName: Full=6-phosphofructo-2-kinase;
           Includes: RecName: Full=Fructose-2,6-bisphosphatase
 gi|46854387|gb|AAH69586.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Homo
           sapiens]
 gi|46854664|gb|AAH69385.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Homo
           sapiens]
 gi|46854695|gb|AAH69600.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Homo
           sapiens]
 gi|46854827|gb|AAH69583.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Homo
           sapiens]
 gi|46854856|gb|AAH69350.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Homo
           sapiens]
 gi|50960712|gb|AAH75075.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Homo
           sapiens]
 gi|50960824|gb|AAH75076.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Homo
           sapiens]
 gi|55665024|emb|CAH70777.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Homo
           sapiens]
 gi|85566780|gb|AAI12104.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Homo
           sapiens]
 gi|85567553|gb|AAI12106.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2, isoform a
           [Homo sapiens]
 gi|119613913|gb|EAW93507.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2, isoform
           CRA_a [Homo sapiens]
 gi|261859044|dbj|BAI46044.1| 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 2 [synthetic
           construct]
          Length = 505

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 35  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 88

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 89  DFFRHDNEEAMKIRKQCALVALEDVKA 115


>gi|77020252|ref|NP_001029137.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 isoform a
           [Rattus norvegicus]
 gi|19924292|sp|Q9JJH5|F262_RAT RecName: Full=6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           2; Short=6PF-2-K/Fru-2,6-P2ase 2; Short=PFK/FBPase 2;
           AltName: Full=6PF-2-K/Fru-2,6-P2ase heart-type isozyme;
           AltName: Full=RH2K; Includes: RecName:
           Full=6-phosphofructo-2-kinase; Includes: RecName:
           Full=Fructose-2,6-bisphosphatase
 gi|8307718|dbj|BAA96496.1| RH2K2 [Rattus norvegicus]
 gi|149058694|gb|EDM09851.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2, isoform
           CRA_b [Rattus norvegicus]
          Length = 557

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 38  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 91

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 92  DFFRHDNEEAMKIRKQCALVALEDVKA 118


>gi|77020258|ref|NP_001029136.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 isoform b
           [Rattus norvegicus]
 gi|8307720|dbj|BAA96497.1| RH2K3 [Rattus norvegicus]
 gi|149058695|gb|EDM09852.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2, isoform
           CRA_c [Rattus norvegicus]
          Length = 534

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 38  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 91

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 92  DFFRHDNEEAMKIRKQCALVALEDVKA 118


>gi|8307716|dbj|BAA96495.1| RH2K1 [Rattus norvegicus]
 gi|8307722|dbj|BAA96498.1| RH2K6 [Rattus norvegicus]
 gi|149058690|gb|EDM09847.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2, isoform
           CRA_a [Rattus norvegicus]
 gi|149058691|gb|EDM09848.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2, isoform
           CRA_a [Rattus norvegicus]
 gi|149058692|gb|EDM09849.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2, isoform
           CRA_a [Rattus norvegicus]
 gi|149058693|gb|EDM09850.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2, isoform
           CRA_a [Rattus norvegicus]
          Length = 519

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 38  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 91

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 92  DFFRHDNEEAMKIRKQCALVALEDVKA 118


>gi|3090419|emb|CAA06605.1| 6-phosphofructo-2-kinase [Homo sapiens]
          Length = 504

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 34  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 87

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 88  DFFRHDNEEAMKIRKQCALVALEDVKA 114


>gi|308271307|emb|CBX27915.1| General secretion pathway protein E [uncultured Desulfobacterium
           sp.]
          Length = 559

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 96  LMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSA 153
           L    K    +    P+ IL+V G  G GKTT I  +  +++    K++       ++  
Sbjct: 288 LEADHKEIVVNLLSHPYGILLVTGPTGSGKTTTIYSMLTRLNSKERKIITIEDPVEYQLE 347

Query: 154 AIDQLKIWAD 163
            I+Q+++ ++
Sbjct: 348 GINQIQVKSE 357


>gi|297531529|ref|YP_003672804.1| capsular exopolysaccharide family [Geobacillus sp. C56-T3]
 gi|297254781|gb|ADI28227.1| capsular exopolysaccharide family [Geobacillus sp. C56-T3]
          Length = 232

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 28/155 (18%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K   + ++V      ++E    +   +   F  D   R  ++   G  G GK+T    L+
Sbjct: 11  KAERRLITVDNPKSPIAEQYRTIRTNIQFSF-IDAPLRSLIVTSTGP-GEGKSTTAANLA 68

Query: 133 KKMSDAGLKVMLAAGD--------TFRSAAIDQLK---------------IWADRTSADF 169
              +  G K +L   D        TFR      L                   D  S   
Sbjct: 69  VVFAQQGKKTLLIDADLRKPTVHYTFRLNNYKGLTNVLTGSAPLLSTCQATEIDHLSILT 128

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKV---DVLIIDT 201
                 + A  L+  A  Q   +     D++I DT
Sbjct: 129 SGPIPPNPAELLSSNAMAQCLEQLYETFDLVIFDT 163


>gi|259419441|ref|ZP_05743357.1| plasmid partitioning protein RepA [Silicibacter sp. TrichCH4B]
 gi|259344682|gb|EEW56569.1| plasmid partitioning protein RepA [Silicibacter sp. TrichCH4B]
          Length = 403

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 112 HVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           HV+ VV    G GKTT    L++ ++  G +V+    D
Sbjct: 121 HVVSVVNFKGGSGKTTTAAHLAQHLALKGHRVLAIDLD 158


>gi|225574621|ref|ZP_03783231.1| hypothetical protein RUMHYD_02698 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038166|gb|EEG48412.1| hypothetical protein RUMHYD_02698 [Blautia hydrogenotrophica DSM
           10507]
          Length = 864

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 8/131 (6%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K+A      + +L K       K+K     ++     DD +   +         G+ VA
Sbjct: 495 EKMAELQYGELPRLQKTLEIEEQKIKNTDLSLVHESVTDDEIARIISRW-----TGIPVA 549

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL--SKPFNWDFSHRPHVILVVGVNG 121
            K+ E   TK    +  + + +    E + ++   +  SK    D +      L +G  G
Sbjct: 550 -KLTEGERTKILGLEAQLHKRVVGQDEGVRRVTDAILRSKAGIKDPTKPIGSFLFLGPTG 608

Query: 122 VGKTTVIGKLS 132
           VGKT +   L+
Sbjct: 609 VGKTELAKTLA 619


>gi|203287911|ref|YP_002222926.1| ABC transporter, ATP-binding protein [Borrelia recurrentis A1]
 gi|201085131|gb|ACH94705.1| ABC transporter, ATP-binding protein [Borrelia recurrentis A1]
          Length = 277

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 7/130 (5%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E +  K     V+   ++     ++ K    +         HR  V+ ++G NG GKTT
Sbjct: 23  IESIKEKLSLNAVTD--IVLKADSIVKKYGEKVVVNGVTIDVHRGEVVGLLGPNGAGKTT 80

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
               +   +     +V++   D  +    ++ +         ++  E          +  
Sbjct: 81  TFYTIVGFIKANSGRVLINNHDVSKLNMYERAR-----LGIVYLPQEPSIFRELTVEDNI 135

Query: 187 KQAQAKKVDV 196
             A  ++ D+
Sbjct: 136 LVALERREDL 145


>gi|164504855|gb|ABY59650.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 transcript
           variant 3 [Homo sapiens]
          Length = 472

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 2   TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 55

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 56  DFFRHDNEEAMKIRKQCALVALEDVKA 82


>gi|168001966|ref|XP_001753685.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695092|gb|EDQ81437.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 807

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 18/165 (10%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +  E + +++  L  P  +    +  P  IL+VG  G GKT     L+K ++      
Sbjct: 345 VDEAKEELEEIVEFLKHPERYSRLGARPPRGILLVGPPGTGKT----LLAKAVAGEADVP 400

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
            ++      ++   +L +    +    + +    +A ++ +     A AK  D       
Sbjct: 401 FISCS----ASEFVELYVGMGASRVRDLFARAKKEAPSIVFIDEIDAVAKGRD------- 449

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           GRL +          + ++L  LD     S + VL AT   + L 
Sbjct: 450 GRLRSVGNDERE-QTLNQLLTELDGFESSSTVIVLGATNRADVLD 493


>gi|153824131|ref|ZP_01976798.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae B33]
 gi|126518350|gb|EAZ75573.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae B33]
          Length = 339

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   +KI E L      ++ + + +   V     ++    +
Sbjct: 46  NDIIREEIKDVLPKKESAALPTPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDT 105

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 106 TSEGVELGKSN--ILLIGPTGSGKTLLAETLARLL 138


>gi|109018549|ref|XP_001082732.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           isoform 4 [Macaca mulatta]
 gi|297280910|ref|XP_002801993.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           [Macaca mulatta]
          Length = 471

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 35  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 88

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 89  DFFRHDNEEAMKIRKQCALVALEDVKA 115


>gi|14590089|ref|NP_142153.1| 2-phosphoglycerate kinase [Pyrococcus horikoshii OT3]
 gi|46576863|sp|O57882|PGK2_PYRHO RecName: Full=2-phosphoglycerate kinase; Short=2PGK
 gi|3256535|dbj|BAA29218.1| 301aa long hypothetical 2-phosphoglycerate kinase [Pyrococcus
           horikoshii OT3]
          Length = 301

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----PH 112
           D+  ++A ++ EEL+ K        +       +LI K     +K + +    R    P 
Sbjct: 32  DLAYSIAIEVQEELVKKGKTIVTKDEIRKLTYQKLIEKGFKEEAKRYIFWRRFRKMKVPL 91

Query: 113 VILVVGVNGVGKTTVIGKLSKKM 135
           +IL+ G  GVGK+T+  +L+ ++
Sbjct: 92  IILLGGPTGVGKSTIATELAFRL 114


>gi|332307039|ref|YP_004434890.1| adenylylsulfate kinase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174368|gb|AEE23622.1| adenylylsulfate kinase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 198

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            +P V+ + G++G GK+T+   L KK++D G    L  GD  R  
Sbjct: 23  QKPCVVWLTGLSGSGKSTIANLLEKKLADNGKHTYLLDGDNVRHG 67


>gi|317495119|ref|ZP_07953489.1| type II/IV secretion system protein [Gemella moribillum M424]
 gi|316914541|gb|EFV36017.1| type II/IV secretion system protein [Gemella moribillum M424]
          Length = 330

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 45/113 (39%), Gaps = 19/113 (16%)

Query: 53  LIRSDIGVAVAQ-------KIVEELLTKRY--------AKDVSVQRVLYDVSELIHKM-- 95
           L++ + G+ +++       + V  L  K Y          ++S   V+    + +  +  
Sbjct: 61  LLKYNAGIDISRNKEPQSGRFVYSLSEKNYYLRVSTLPLSELSEGCVVRIFIDELEDVDY 120

Query: 96  -LMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            +    +      S + +  IL  G  G GK+T + KL+  +++   +V+   
Sbjct: 121 SIFEEDREHINSLSKKMYGLILFSGPTGSGKSTSMYKLASSLANMDKQVITVE 173


>gi|325109958|ref|YP_004271026.1| ATPase AAA [Planctomyces brasiliensis DSM 5305]
 gi|324970226|gb|ADY61004.1| AAA ATPase [Planctomyces brasiliensis DSM 5305]
          Length = 278

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 6/166 (3%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
            +E +      L +   +       V  V G  G GKTT+ G L+++M   G  V     
Sbjct: 20  ANESLAAPQQALLEKLRFSLLDSNGVAAVTGFPGTGKTTLAGCLAREMRHRGGHVAWTTT 79

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRL 205
             F ++++  L+ +A +       ++  S + AL  +  ++   +     +L++D A   
Sbjct: 80  SVFDASSL--LRHYAQQLLPGNSSTKTSSLSPALLQDQLQERMLEQGGKYLLLVDEA--Q 135

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
             N   +A + +++    +         LQV    TG   LR +  
Sbjct: 136 SLNEDSLALLKRLVETAAQPMLKTNPPRLQVSLLLTGHAVLRDIVR 181


>gi|259502828|ref|ZP_05745730.1| deoxynucleoside kinase [Lactobacillus antri DSM 16041]
 gi|259169195|gb|EEW53690.1| deoxynucleoside kinase [Lactobacillus antri DSM 16041]
          Length = 210

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDA 138
           VI+  G+ GVGKTT+ GK+++ +   
Sbjct: 2   VIITAGMIGVGKTTLTGKIAEHLHTK 27


>gi|291303439|ref|YP_003514717.1| LAO/AO transporter ATPase [Stackebrandtia nassauensis DSM 44728]
 gi|290572659|gb|ADD45624.1| LAO/AO transport system ATPase [Stackebrandtia nassauensis DSM
           44728]
          Length = 307

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 11/154 (7%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E L  +    D      L  V E   + +  ++       + +  VI + G  GVGK+T
Sbjct: 4   IENLARRAADGDPRALGRLITVVENGGEGVRAVAATL-APLTGQSQVIGLTGSPGVGKST 62

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIGSDAA 179
               L      AG +V + A D        AI      ++  A                 
Sbjct: 63  TTTALVSTFRSAGKRVAVLAVDPSSPFTGGAILGDRVRMQEHALDEGVYIRSMSSRGHLG 122

Query: 180 ALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
            LA    +A +  +A   DV++I+T G       
Sbjct: 123 GLAAATPQAVRVLEACGFDVILIETVGVGQAEVE 156


>gi|308808470|ref|XP_003081545.1| cell division protein FtsH (ISS) [Ostreococcus tauri]
 gi|116060010|emb|CAL56069.1| cell division protein FtsH (ISS) [Ostreococcus tauri]
          Length = 966

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +      KD+S    + +    +   L    K +N   +  P  +L+ G  G GKT    
Sbjct: 361 VRQGMSLKDISGIDTVKEEMLELISYLKDFDK-YNSMGARIPAGVLLCGPPGTGKT---- 415

Query: 130 KLSKKMSDAGLKVMLAAGDT 149
            L++ ++        +   T
Sbjct: 416 LLARCVAGEAGVPFFSCAGT 435


>gi|108707626|gb|ABF95421.1| 6-phosphofructo-2-kinase family protein, expressed [Oryza sativa
           Japonica Group]
          Length = 511

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA--AIDQLKIWADRTSADFVC 171
           I++VG+   GKT    KL++ +   G +        +R     I+Q   +    + + V 
Sbjct: 246 IVLVGLPARGKTFTAAKLTRYLRWLGHETKHFNVGKYRRLKHGINQTADFFRGDNKEGV- 304

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            E  ++ AALA E       +   V I D      N   ++  + +  
Sbjct: 305 -EARNEVAALAMEDMLSWMQEGGQVGIFDATNSTRNRRNMLMKMAEGK 351


>gi|108707625|gb|ABF95420.1| 6-phosphofructo-2-kinase family protein, expressed [Oryza sativa
           Japonica Group]
          Length = 582

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA--AIDQLKIWADRTSADFVC 171
           I++VG+   GKT    KL++ +   G +        +R     I+Q   +    + + V 
Sbjct: 246 IVLVGLPARGKTFTAAKLTRYLRWLGHETKHFNVGKYRRLKHGINQTADFFRGDNKEGV- 304

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            E  ++ AALA E       +   V I D      N   ++  + +  
Sbjct: 305 -EARNEVAALAMEDMLSWMQEGGQVGIFDATNSTRNRRNMLMKMAEGK 351


>gi|77641426|gb|ABB00556.1| I2 [Nicotiana tabacum]
          Length = 236

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG-- 129
           T+R +  V  +  ++     I+ ++  L    +     R  VI +VG+ GVGKTT+    
Sbjct: 1   TRRLSTSVVDEFDIFGRQNEINILVDRLLS--DDAIKKRLTVIPIVGMAGVGKTTLAKVV 58

Query: 130 ----KLSKKMSDAGLKVMLAAGDTFRSA 153
               K+ +         +    D FR  
Sbjct: 59  YNDEKVKQHFKLKSWISVSEPYDVFRIT 86


>gi|328873520|gb|EGG21887.1| nucleotide binding protein 1-like protein [Dictyostelium
           fasciculatum]
          Length = 879

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 11/107 (10%)

Query: 58  IGVAVAQKIVEE----LLTKRYAKDVSVQRVLYDVSELIHKML-----MPLSKPFNWDFS 108
           + V+  +++       ++ K   K   + R L D+ + I +M      + + K    D  
Sbjct: 228 VDVSTIKELARRWYPNVMEKAPVKR-YLHRSLADIEDSIEEMKFYQKHIFIPKDEYRDMD 286

Query: 109 HRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           +  H+ILV+ G  GVGK+TV  +L+  +S  G KV L   D    +A
Sbjct: 287 NIKHIILVLSGKGGVGKSTVASQLALYLSYTGKKVGLLDVDLCGPSA 333


>gi|330448843|ref|ZP_08312488.1| cobQ/CobB/MinD/ParA nucleotide binding domain protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493034|dbj|GAA06985.1| cobQ/CobB/MinD/ParA nucleotide binding domain protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 213

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I+++G    G GK+T+   ++  +   G  V+L   D   SA    ++   DR   + + 
Sbjct: 4   IILLGSQKGGCGKSTLAVNVAGWLVHQGHNVILVDADPQGSA----VRWAQDRQEQETLK 59

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                 A+    +  K   A   D ++ DTAGR    
Sbjct: 60  HIPHVQASGNINQTLKD-LAVHYDYVVADTAGRDSRE 95


>gi|296274456|ref|YP_003657087.1| adenylylsulfate kinase [Arcobacter nitrofigilis DSM 7299]
 gi|296098630|gb|ADG94580.1| adenylylsulfate kinase [Arcobacter nitrofigilis DSM 7299]
          Length = 165

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           VI ++G++G GKTT+  K+     +  +K  +  GD  R
Sbjct: 2   VIWLIGISGAGKTTLGNKIHNYYKEKNIKSFILDGDLIR 40


>gi|283852761|ref|ZP_06370025.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio sp. FW1012B]
 gi|283571842|gb|EFC19838.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio sp. FW1012B]
          Length = 397

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           GVGKTT    L+  ++  G +V+L   DT   AA 
Sbjct: 164 GVGKTTTAVNLAAALAMDGRRVLLIDADTQGQAAY 198


>gi|242094500|ref|XP_002437740.1| hypothetical protein SORBIDRAFT_10g001680 [Sorghum bicolor]
 gi|241915963|gb|EER89107.1| hypothetical protein SORBIDRAFT_10g001680 [Sorghum bicolor]
          Length = 871

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKL--SKKMSDAGLK 141
           L +  + + +++  L +P   + S+  P V+ +VG+ G+GKTT+  K+  S  +SD    
Sbjct: 176 LDEPKKKLMELIGILDEPKEHESSNTGPRVVSLVGMGGIGKTTLTKKVFDSNDLSDKFGT 235

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                     S + +Q +I+ +     F    +         +      + K D  ++ T
Sbjct: 236 RAWITV----SQSFEQKEIFKEMVKHLFGAELLHKLLEDHQGQQVTFQDSGKDDSCVVVT 291

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
             R    +   +    + +        A    L          +L ++E      G    
Sbjct: 292 T-RNQTLAKYCSPPSHIHQPDFLGKEEARTLFL-----KKTNRSLDELEKGDKTKGIVEK 345

Query: 262 IMTKMDGTARGGGLIPI 278
           I+ K      GG  + I
Sbjct: 346 ILNKC-----GGLPLAI 357


>gi|221201690|ref|ZP_03574728.1| type VI secretion ATPase, ClpV1 family [Burkholderia multivorans
           CGD2M]
 gi|221207235|ref|ZP_03580245.1| type VI secretion ATPase, ClpV1 family [Burkholderia multivorans
           CGD2]
 gi|221172823|gb|EEE05260.1| type VI secretion ATPase, ClpV1 family [Burkholderia multivorans
           CGD2]
 gi|221178506|gb|EEE10915.1| type VI secretion ATPase, ClpV1 family [Burkholderia multivorans
           CGD2M]
          Length = 889

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 612 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMITINMSEYQEAHSVSGLK- 669

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 670 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 719

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           ++   +       + L +L +  G  A+ Q 
Sbjct: 720 MMDDAEGREIDFRNTLIILTSNVGSAAVMQA 750


>gi|170289697|ref|YP_001736513.1| putative ATPase RIL [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173777|gb|ACB06830.1| ABC transporter related [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 591

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           E +H+  +     F         V+ +VG NGVGKTT I
Sbjct: 79  EEVHRYGVNGFTLFRLPIVRPSKVLGLVGPNGVGKTTSI 117


>gi|157369620|ref|YP_001477609.1| cobyrinic acid a,c-diamide synthase [Serratia proteamaculans 568]
 gi|157321384|gb|ABV40481.1| cobyrinic acid a,c-diamide synthase [Serratia proteamaculans 568]
          Length = 211

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKM-SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           I+++G    GVGK+T    ++  +    G   ++   D  + + +       +      +
Sbjct: 2   IVLIGSQKGGVGKSTKAVNIAGYLILKQGKTAIIVDADDQK-SIMTWYNDRQNVEGLPHI 60

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                S           +      D +I+DTAGR    
Sbjct: 61  PVVAASGKIKETLLELDR----HYDYVIVDTAGRDSAE 94


>gi|86739095|ref|YP_479495.1| ABC transporter-like protein [Frankia sp. CcI3]
 gi|86565957|gb|ABD09766.1| ABC transporter related [Frankia sp. CcI3]
          Length = 653

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 11/82 (13%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E L  +   + VS +   Y+ ++ + + L  +++P         H + +VG  G GKTT+
Sbjct: 404 ERLRGRVAFERVSFR---YEPNKPLIEDLSLVAEPG--------HTVAIVGPTGAGKTTL 452

Query: 128 IGKLSKKMSDAGLKVMLAAGDT 149
           I  L +     G ++ L   D 
Sbjct: 453 INLLMRFYEVTGGRITLDGVDV 474


>gi|92114820|ref|YP_574748.1| ABC transporter related [Chromohalobacter salexigens DSM 3043]
 gi|91797910|gb|ABE60049.1| ABC transporter related protein [Chromohalobacter salexigens DSM
           3043]
          Length = 290

 Score = 37.9 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 97  MPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            P++   N D    P  V  +VG NG GK+T++  LS+ +      V+L   D  R
Sbjct: 36  GPVAVIENLDLRLPPGRVTAIVGPNGCGKSTLLAGLSRLLKPRDGTVLLDGADIQR 91


>gi|332637895|ref|ZP_08416758.1| Wze [Weissella cibaria KACC 11862]
          Length = 240

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 14/169 (8%)

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTTV   L+   + +G  V+    D  RS A    K+  +R     +       AA + 
Sbjct: 65  GKTTVASNLAVTWAQSGQSVLYVDADLRRSTAQATFKVLPNRGLTTVLS------AAKMP 118

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +A ++ Q   +DVL   TAG +  N   + G  KM  ++   + H    V+ V      
Sbjct: 119 IDAVQKTQITGLDVL---TAGPVPPNPAELLGSEKMTTIITWANAHYDKVVIDVPPVLAV 175

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGV 291
            +A   ++    V     L  TK     R    + I+   + P+  +GV
Sbjct: 176 TDAQMLMKQVDGVVLVVALGKTKKANIKR---TVEIMKLSQTPI--IGV 219


>gi|325268408|ref|ZP_08135040.1| phosphoribulokinase [Prevotella multiformis DSM 16608]
 gi|324989262|gb|EGC21213.1| phosphoribulokinase [Prevotella multiformis DSM 16608]
          Length = 519

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 11/121 (9%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
             + ++I   ++ +  +E      I   +G+       E +              L +VS
Sbjct: 184 SRLGELIRQDKMFEVFKEHHRWQGI---LGIKTVGDFNEAVKK-------GFSTDLINVS 233

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           E + +  +               V+L+ G +  GKTT   +LS ++  +G+K +  + D 
Sbjct: 234 EALQEKKISQIAD-TIASRKEIRVVLIAGPSSSGKTTFCKRLSVQLLASGVKPVQISLDD 292

Query: 150 F 150
           +
Sbjct: 293 Y 293


>gi|313117418|ref|YP_004044401.1| ATPase involved in chromosome partitioning [Halogeometricum
           borinquense DSM 11551]
 gi|312294309|gb|ADQ68740.1| ATPase involved in chromosome partitioning [Halogeometricum
           borinquense DSM 11551]
          Length = 295

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAA-----GDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           GVGKTT    L+   + AGLK ++       GD  R   +D         S D +   + 
Sbjct: 16  GVGKTTTAANLAVAHARAGLKPLVVPLDPQDGDLSRLFGVD----HERTESVDNIVRHMI 71

Query: 176 SDAAALAYEAFKQAQAKKVDVL-----IIDTAGRLHNNSILMA-------GIGKMIRVLK 223
                   +  +  +   VD++     + D A  L                  +++RVL+
Sbjct: 72  RRPKGEFDDLVRTVE--GVDIVPEHNMLSDLAEYLQREKDQAEAMGEAFGMHAQLLRVLR 129

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI 276
                  + VL      T           +     T  ++  ++ +A+G   +
Sbjct: 130 EAGVPETYDVLICDPPATEG------PHLYNAINATRSLVIPVEPSAKGRAAV 176


>gi|326780910|ref|ZP_08240175.1| ATPase AAA-2 domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|326661243|gb|EGE46089.1| ATPase AAA-2 domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 846

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 15/140 (10%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +L  + +A+ V     +  VSE + +    +  P     +      L +G  GVGKT + 
Sbjct: 529 KLEEEMHARIVGQDEAVTAVSEAVRRNRAGMGDP-----NRPVGSFLFLGPTGVGKTELA 583

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L++ +   G    +   D          +     T A  V +  G      A +  ++
Sbjct: 584 KTLAELL--FGADDRMVRFDMS--------EFQEKHTVARLVGAPPGYVGYDEAGQLTEK 633

Query: 189 AQAKKVDVLIIDTAGRLHNN 208
            +     V++ D   + H +
Sbjct: 634 VRRNPYSVVLFDEVEKAHPD 653


>gi|296230629|ref|XP_002760786.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           isoform 2 [Callithrix jacchus]
          Length = 471

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 35  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 88

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 89  DFFRHDNEEAMKIRKQCALVALEDVKA 115


>gi|294101884|ref|YP_003553742.1| LAO/AO transport system ATPase [Aminobacterium colombiense DSM
           12261]
 gi|293616864|gb|ADE57018.1| LAO/AO transport system ATPase [Aminobacterium colombiense DSM
           12261]
          Length = 314

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 18/146 (12%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           +  A+ +S+       SE I K L        +  + +  VI + G  G GK+T++ KL 
Sbjct: 14  RALARIISLVENEAPESEEIMKYL--------YPHTGKALVIGITGSPGAGKSTLVDKLI 65

Query: 133 KKMSDAGLKVMLAAGDTFRS---AAID----QLKIWADRTSADFVCSEIGSDAAAL---A 182
            +       V + A D        AI     +++  A+                 +    
Sbjct: 66  LEFRKKKKTVGIIAVDPSSPFSGGAILADRIRMQRHANDPDVYIRSMGTRGSLGGVSRST 125

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNN 208
            EA K   A   DV+II+T G   + 
Sbjct: 126 REAVKILDACGKDVVIIETVGVGQSE 151


>gi|281412817|ref|YP_003346896.1| daunorubicin resistance ABC transporter ATPase subunit [Thermotoga
           naphthophila RKU-10]
 gi|281373920|gb|ADA67482.1| daunorubicin resistance ABC transporter ATPase subunit [Thermotoga
           naphthophila RKU-10]
          Length = 325

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 87  DVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
            V E + K            FS  +  V   +G NG GKTT I  L+  +     K  +A
Sbjct: 5   IVVENLVKKFGDFEAVKGVSFSVKKGEVFAFLGPNGAGKTTTIHMLTTLLKPTSGKAWVA 64

Query: 146 AGDT 149
             D 
Sbjct: 65  GHDV 68


>gi|209881223|ref|XP_002142050.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
           [Cryptosporidium muris RN66]
 gi|209557656|gb|EEA07701.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative
           [Cryptosporidium muris RN66]
          Length = 1052

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
            D+ ++   + +   K    +  +   +++VVG  G GKTT   +L++ + +AG      
Sbjct: 299 RDMQQVRKTLPVFAMKEELLNLIYEHPIVVVVGETGSGKTT---QLTQYLYEAGYSNYGI 355

Query: 146 AGDTF--RSAAIDQLKIWADRTSA 167
              T   R AA+   K  ++  + 
Sbjct: 356 IACTQPRRVAAVSVAKRVSEEMNV 379


>gi|167914779|ref|ZP_02501870.1| partition protein [Burkholderia pseudomallei 112]
          Length = 213

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGK+T   +L+  ++  G +V L  GD+ R++           T    + +   +D  +
Sbjct: 7   GVGKSTTAVQLAIGLALDGARVWLVDGDSQRTS--LSAITARAHTGRPLIAASAYADGPS 64

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRL 205
           L  +  +Q    + D ++ID  GR 
Sbjct: 65  LRAQVLQQC--VQFDQVVIDVGGRD 87


>gi|319790206|ref|YP_004151839.1| ATPase-like, ParA/MinD [Thermovibrio ammonificans HB-1]
 gi|317114708|gb|ADU97198.1| ATPase-like, ParA/MinD [Thermovibrio ammonificans HB-1]
          Length = 294

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 97  MPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            P+      + S   H I ++ G  GVGKTTV   L+ +++  G KV L   D
Sbjct: 22  DPMDVKLTCNLSKIKHKIGILSGKGGVGKTTVATNLAAELAKRGYKVGLLDAD 74


>gi|313235561|emb|CBY11016.1| unnamed protein product [Oikopleura dioica]
          Length = 256

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 15/143 (10%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           R  +IL+ G +G GK+T+  K   + S   L++ L + D F             +     
Sbjct: 5   RKEIILLRGPSGSGKSTLARKFQSEFSRQKLRIALHSADDF-----------FMKNGQYC 53

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN----SILMAGIGKMIRVLKRL 225
              +  S A +   E  +++   ++D +++D            + L       IR+ +  
Sbjct: 54  WDPKKLSLAHSNCRERVRRSMENELDRILVDNTNMKIIEMVPYAKLALEFKYFIRIEEVA 113

Query: 226 DPHAPHSVLQVLDATTGQNALRQ 248
            P    +   ++     +NA   
Sbjct: 114 LPKGFQNWHAMIPILEERNAHNV 136


>gi|288926843|ref|ZP_06420750.1| phosphoribulokinase family protein [Prevotella buccae D17]
 gi|315607075|ref|ZP_07882079.1| phosphoribulokinase [Prevotella buccae ATCC 33574]
 gi|288336368|gb|EFC74747.1| phosphoribulokinase family protein [Prevotella buccae D17]
 gi|315251129|gb|EFU31114.1| phosphoribulokinase [Prevotella buccae ATCC 33574]
          Length = 553

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 14/94 (14%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIH----KMLMPLSKPF----------NWDFSHRPHVILV 116
                 +D+   R + D +E +H      L+ +S+                     ++L+
Sbjct: 234 KEHHRWQDIMGIRTVGDFNEAVHGGHATDLINVSEALQEKKIAKIADEIANRKGVKLVLL 293

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            G +  GKTT   +LS ++   GLK +  + D +
Sbjct: 294 AGPSSSGKTTTCKRLSIQLLANGLKPLQISLDDY 327


>gi|224369147|ref|YP_002603311.1| Mpl [Desulfobacterium autotrophicum HRM2]
 gi|223691864|gb|ACN15147.1| Mpl [Desulfobacterium autotrophicum HRM2]
          Length = 472

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 9/107 (8%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT------- 149
             + +  N+  +    +ILV G +G  KTT    ++  ++ AGL      G         
Sbjct: 101 CSMPQALNYFVAKDKKIILVTGTHG--KTTTSSLMAHVLNQAGLDPSFMIGGIVTDFNSN 158

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           +R    D + I  D     F          A  +      +    D+
Sbjct: 159 YRIGGGDYIVIEGDEYDTAFFDKGPKFMHYAPCFTIMTGVEFDHADI 205


>gi|146300355|ref|YP_001194946.1| ATP-dependent metalloprotease FtsH [Flavobacterium johnsoniae
           UW101]
 gi|146154773|gb|ABQ05627.1| ATP-dependent metalloprotease FtsH; peptidase family M41
           [Flavobacterium johnsoniae UW101]
          Length = 641

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 25/181 (13%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K   KDV+      +  + I + L    K  N      P   L+VG  G GKT     L+
Sbjct: 188 KTTFKDVAGLEGAKEEIQEIVEFLKNPEKYTNLG-GKIPKGALLVGPPGTGKT----LLA 242

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K ++        +   +                  +       S    L  +A +++ A 
Sbjct: 243 KAVAGEAQVPFFSLSGS---------------DFVEMFVGVGASRVRDLFKQAKEKSPAI 287

Query: 193 KVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
              +  ID  GR    S +          + ++L  +D    +S + VL AT   + L +
Sbjct: 288 IF-IDEIDAVGRARGKSNMSGGNDERENTLNQLLTEMDGFGTNSNVIVLAATNRADVLDK 346

Query: 249 V 249
            
Sbjct: 347 A 347


>gi|88810371|ref|ZP_01125628.1| ABC transporter-like protein [Nitrococcus mobilis Nb-231]
 gi|88792001|gb|EAR23111.1| ABC transporter-like protein [Nitrococcus mobilis Nb-231]
          Length = 606

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 23/101 (22%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---------TFRSA------AIDQLKI 160
           +VG NG GKTT+I  L++       +++L   D           R        A  Q+++
Sbjct: 391 LVGRNGSGKTTLIKLLARLYMPERGRILLDGLDLRAWDERTLRERIGVIFQDFARYQMRV 450

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
             +  + D    E  +     A +    A         IDT
Sbjct: 451 GENVGAGDVRHFEDEARWRKAADKGLATA--------FIDT 483


>gi|296126118|ref|YP_003633370.1| ATP-dependent metalloprotease FtsH [Brachyspira murdochii DSM
           12563]
 gi|296017934|gb|ADG71171.1| ATP-dependent metalloprotease FtsH [Brachyspira murdochii DSM
           12563]
          Length = 701

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           K   KDV   +   +  + + + L   SK F    +  P  +L+VG  G GKT  + K
Sbjct: 177 KVTFKDVEGCKEAKEELQEVVQFLKDASK-FTKLGAKIPKGVLLVGPPGTGKTL-LAK 232


>gi|226355529|ref|YP_002785269.1| 2-phosphoglycerate kinase [Deinococcus deserti VCD115]
 gi|226317519|gb|ACO45515.1| putative phosphoglycerate kinase [Deinococcus deserti VCD115]
          Length = 502

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 14/112 (12%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP------ 102
           L   ++ + +   VA+K V  +  +              + E +  +L     P      
Sbjct: 193 LVQSMLAAGVAPDVARK-VARITQRDLRGSEDRVVRRSRIREKVEALLREEVGPDISARY 251

Query: 103 ---FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                     RP V+L+ GV+G GK+ +  +++ ++        + + D+ R
Sbjct: 252 RLLRVIRRPPRPLVVLLGGVSGTGKSVLAAEIAYRL----GITRVVSTDSIR 299


>gi|182440247|ref|YP_001827966.1| putative chaperone [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178468763|dbj|BAG23283.1| putative chaperone [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 846

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 15/140 (10%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +L  + +A+ V     +  VSE + +    +  P     +      L +G  GVGKT + 
Sbjct: 529 KLEEEMHARIVGQDEAVTAVSEAVRRNRAGMGDP-----NRPVGSFLFLGPTGVGKTELA 583

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L++ +   G    +   D          +     T A  V +  G      A +  ++
Sbjct: 584 KTLAELL--FGADDRMVRFDMS--------EFQEKHTVARLVGAPPGYVGYDEAGQLTEK 633

Query: 189 AQAKKVDVLIIDTAGRLHNN 208
            +     V++ D   + H +
Sbjct: 634 VRRNPYSVVLFDEVEKAHPD 653


>gi|34557037|ref|NP_906852.1| zinc metallopeptidase [Wolinella succinogenes DSM 1740]
 gi|34482752|emb|CAE09752.1| ZINC METALLOPEPTIDASE [Wolinella succinogenes]
          Length = 648

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G+  ++K+V     K    D++      D    I   L    +  N   +  P  +L+V
Sbjct: 167 LGMGSSKKLVNSEKPKVKFDDMAGNDEAKDEVVEIVDFLKNPDRYLNLG-AKIPKGVLLV 225

Query: 118 GVNGVGKTTVIGK 130
           G  G GKT  + K
Sbjct: 226 GPPGTGKTL-LAK 237


>gi|15594598|ref|NP_212387.1| ATP-dependent protease LA (lon-1) [Borrelia burgdorferi B31]
 gi|216264339|ref|ZP_03436331.1| ATP-dependent protease La [Borrelia burgdorferi 156a]
 gi|223888786|ref|ZP_03623377.1| ATP-dependent protease La [Borrelia burgdorferi 64b]
 gi|2499848|sp|Q59185|LON1_BORBU RecName: Full=Lon protease 1; AltName: Full=ATP-dependent protease
           La 1
 gi|1255893|gb|AAB72011.1| Lon protease [Borrelia burgdorferi]
 gi|2688145|gb|AAB91493.1| ATP-dependent protease LA (lon-1) [Borrelia burgdorferi B31]
 gi|215980812|gb|EEC21619.1| ATP-dependent protease La [Borrelia burgdorferi 156a]
 gi|223885602|gb|EEF56701.1| ATP-dependent protease La [Borrelia burgdorferi 64b]
          Length = 806

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 61/160 (38%), Gaps = 25/160 (15%)

Query: 4   QKVASESLSWI--RKLTK-------GFASTSL--KLKEGITDIISSRRLDDGVREELED- 51
           +++  +   +    +L         G   +S   KLK  +  +       + V +ELE  
Sbjct: 250 ERLEKQQKEFFLKEQLKAIKAELGIGDKKSSDLEKLKTKLKALELKGEPLEVVEKELEKF 309

Query: 52  LLIR-SDIGVAVAQ---KIVEELLTKRYA---KDVSVQRVLYDVSE------LIHKMLMP 98
            L+  S     V +   +++ EL  + +      + +Q+    + +       +   ++ 
Sbjct: 310 SLLETSSAEYIVVRNYLELITELPWRDFKINFDKLDLQKSKKILDKTHYGMNEVKDRIIE 369

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
                    + +  +IL+VG  GVGKT++   ++K +   
Sbjct: 370 YISVLKLRKTQKGAIILLVGPPGVGKTSIGAAIAKVLRTK 409


>gi|115350441|ref|YP_772280.1| ATPase [Burkholderia ambifaria AMMD]
 gi|115280429|gb|ABI85946.1| ATPase AAA-2 domain protein [Burkholderia ambifaria AMMD]
          Length = 889

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 612 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMVTINMSEYQEAHSVSGLK- 669

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 670 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 719

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 720 TMDDAEGREIDFRNTLIILTSNVGSAAVMQA 750


>gi|326404211|ref|YP_004284293.1| chaperone protein ClpB [Acidiphilium multivorum AIU301]
 gi|325051073|dbj|BAJ81411.1| chaperone protein ClpB [Acidiphilium multivorum AIU301]
          Length = 860

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 19/141 (13%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           EEL  +   ++ +    L  VS+ + +    L  P     S      L +G  GVGKT  
Sbjct: 561 EELRKRVVGQEAA----LRAVSDAVRRARAGLQDPNRPIGS-----FLFLGPTGVGKTET 611

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ + D    +        R    + ++  A           +G +   +  EA +
Sbjct: 612 CKALAEFLFDDERAM-------VRIDMSEFMEKHAVARLIGAPPGYVGYEEGGVLTEAVR 664

Query: 188 QAQAKKVDVLIIDTAGRLHNN 208
           +   +   V++ D   + H +
Sbjct: 665 R---RPYQVILFDEVEKAHED 682


>gi|301786619|ref|XP_002928726.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           2-like [Ailuropoda melanoleuca]
          Length = 474

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 37  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 90

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 91  DFFRHDNEEAMKIRKQCALVALEDVKA 117


>gi|288800296|ref|ZP_06405754.1| phosphoribulokinase family protein [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332509|gb|EFC70989.1| phosphoribulokinase family protein [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 556

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +GV       E++   + +  + V   L +    I K+   +++  N        V+L+ 
Sbjct: 245 LGVRTVGDFNEKVEEGKGSDLIRVSEALQEKR--IAKIADEIAQRNN------VKVVLIA 296

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           G +  GKTT   +LS ++   G+  +  + D +
Sbjct: 297 GPSSSGKTTFCKRLSIQLLTNGIHPVELSLDNY 329


>gi|283957171|ref|ZP_06374635.1| putative molybdopterin-guanine dinucleotide biosynthesis protein
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791347|gb|EFC30152.1| putative molybdopterin-guanine dinucleotide biosynthesis protein
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 163

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +I   G +  GKTT+I K++       LKV++   D
Sbjct: 5   IIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHD 40


>gi|290958877|ref|YP_003490059.1| ATP-binding protein [Streptomyces scabiei 87.22]
 gi|260648403|emb|CBG71514.1| putative ATP-binding protein [Streptomyces scabiei 87.22]
          Length = 320

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           +  VG  G GKTT+    ++ ++ +G  ++   GD  +  A
Sbjct: 3   VAFVGKGGSGKTTLSALFARHLARSGAPLVAIDGDINQHLA 43


>gi|224541329|ref|ZP_03681868.1| hypothetical protein CATMIT_00489 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525766|gb|EEF94871.1| hypothetical protein CATMIT_00489 [Catenibacterium mitsuokai DSM
           15897]
          Length = 292

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 52  LLIRSDIG-VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH----KMLMPLSKPFNWD 106
           +L + D+      + ++ E   + ++      +   +  ++++    ++     K     
Sbjct: 64  ILTKKDLADPKATEALIAEFKRQGHSAIAVDLKNFKEEKKIVNMCRYQLKEKREKEAARG 123

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              +P   LV G+  VGK+T I K++K+ 
Sbjct: 124 LKPKPIRALVAGIPNVGKSTFINKIAKRK 152


>gi|146279322|ref|YP_001169480.1| ABC-type branched-chain amino acid transport systems periplasmic
           component-like protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557563|gb|ABP72175.1| ABC-type branched-chain amino acid transport systems periplasmic
           component-like protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 257

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           +  ++G NG GKTTV   L+K +  +  K+ L   D  R+
Sbjct: 40  IHALIGPNGAGKTTVFNLLTKFLQPSRGKITLLGTDITRT 79


>gi|125560297|gb|EAZ05745.1| hypothetical protein OsI_27977 [Oryza sativa Indica Group]
          Length = 955

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 22/127 (17%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           +R+L K  +    K K+   +I  + RR+++ ++E          +    A+  V+ ++T
Sbjct: 99  LRRLRKKMSKLFKKAKDR-REIAGAIRRINEKLQE----------VATRRARYRVDSIVT 147

Query: 73  KRYAK---DVSVQRVLYDVSELI------HKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           K       D  +Q +    +ELI       K++  LS   +   S +  +I +VG  G+G
Sbjct: 148 KPAGPVSIDPRIQALYKRSTELIGVDGPMDKIINMLSPRNDIHLSDKKKIISIVGFGGLG 207

Query: 124 KTTVIGK 130
           KTT + K
Sbjct: 208 KTT-LAK 213


>gi|113954944|ref|YP_731142.1| ABC transporter permease/ATP-binding protein [Synechococcus sp.
           CC9311]
 gi|113882295|gb|ABI47253.1| ABC transporter, permease/ATP-binding protein [Synechococcus sp.
           CC9311]
          Length = 612

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 64/156 (41%), Gaps = 3/156 (1%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           ++L       + +  +    + +  R+ + + E LE +   +  G A+A      LL   
Sbjct: 303 QRLFDPLRQMAERFTQIQGGLTAVERIGELLEEPLEIVDHGATRGSALASAFGSTLLQNA 362

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            +   S   V+++  +  ++   P+ +  ++  +   HV  +VG  G GKTTVI  L + 
Sbjct: 363 SSSQ-SRGEVIFEEVDFAYRQDEPILRNLSFRIAPGEHV-ALVGPTGSGKTTVIRLLCRL 420

Query: 135 MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
                 +++L   D  R+  + +L+        D  
Sbjct: 421 YEPQRGRILLDGQDI-RTLPLQELRRQLGVVLQDTF 455


>gi|153951731|ref|YP_001398100.1| molybdopterin-guanine dinucleotide biosynthesis protein MobB
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939177|gb|ABS43918.1| molybdopterin-guanine dinucleotide biosynthesis protein MobB
           [Campylobacter jejuni subsp. doylei 269.97]
          Length = 163

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +I   G +  GKTT+I K++       LKV++   D
Sbjct: 5   IIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHD 40


>gi|89897344|ref|YP_520831.1| hypothetical protein DSY4598 [Desulfitobacterium hafniense Y51]
 gi|89336792|dbj|BAE86387.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 598

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 64/180 (35%), Gaps = 18/180 (10%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKT 125
           +E +        +  Q  L    E I +  +P  K    D  +    VI  +G  GVGKT
Sbjct: 306 IENVRA------LLTQDNLIIHKERIQEETIPQLKDVIDDLHNTHKKVIFTMGKGGVGKT 359

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           T+   ++  +S+ G KV L   D    AA  +  +  + +       +  ++      E 
Sbjct: 360 TIAAAVALGLSERGKKVHLTTTD---PAAHLRF-VINENSGITLSHIDEQAELKKYQEEV 415

Query: 186 FKQAQAKKV--DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
             +A+      D+  I+   R             + R   ++   A   V+ +  A TG 
Sbjct: 416 LSKARETMSEEDIAYIEEDLRSP-----CTQEIAVFRAFAQIVEKAEDQVVVIDTAPTGH 470


>gi|64762445|ref|NP_001018063.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 isoform b
           [Homo sapiens]
 gi|114572260|ref|XP_514155.2| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           isoform 8 [Pan troglodytes]
 gi|19848258|gb|AAL99386.1|AF470623_1 PFK2/F26DPase [Homo sapiens]
 gi|11933149|dbj|BAB19681.1| 6-phosphofructo-2-kinase heart isoform [Homo sapiens]
 gi|55665025|emb|CAH70778.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Homo
           sapiens]
 gi|119613914|gb|EAW93508.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2, isoform
           CRA_b [Homo sapiens]
 gi|158259227|dbj|BAF85572.1| unnamed protein product [Homo sapiens]
          Length = 471

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +      
Sbjct: 35  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY------ 88

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 89  DFFRHDNEEAMKIRKQCALVALEDVKA 115


>gi|303237640|ref|ZP_07324200.1| chain length determinant protein [Prevotella disiens FB035-09AN]
 gi|302482092|gb|EFL45127.1| chain length determinant protein [Prevotella disiens FB035-09AN]
          Length = 830

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 2/144 (1%)

Query: 57  DIGVAVAQKIVEEL-LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           D+       I+ ++ +    AK  +   V  + +  + ++   +     +  +    VIL
Sbjct: 543 DVARLTTLPIIADVPVANEAAKGKADIVVHENQNNQMEEVFRAMRTNIQFVLTEGQKVIL 602

Query: 116 VVGVN-GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
                 G GKT     L+   +  G K +L   D  R    +Q KI   +     +  + 
Sbjct: 603 FTSSTSGEGKTFAAANLAVSFALLGKKAILVGLDIRRPRLAEQFKINDHKHGITNLLLKN 662

Query: 175 GSDAAALAYEAFKQAQAKKVDVLI 198
                 L  +         +D+L+
Sbjct: 663 EPTVEDLREQILPSGINSNLDLLM 686


>gi|298252619|ref|ZP_06976413.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Gardnerella
           vaginalis 5-1]
 gi|297532983|gb|EFH71867.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Gardnerella
           vaginalis 5-1]
          Length = 337

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            + P VI +VG    GKT++   L+KK+++ G++  +   D ++
Sbjct: 7   DNIPKVISMVGPTASGKTSLGIALAKKLAERGIRAEIINADAYQ 50


>gi|262195080|ref|YP_003266289.1| uridine kinase [Haliangium ochraceum DSM 14365]
 gi|262078427|gb|ACY14396.1| uridine kinase [Haliangium ochraceum DSM 14365]
          Length = 220

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
               S  P +I + G  G GKTTV  KL+  + +   +  L   D++
Sbjct: 9   TAQGSFTPLIIGIAGGTGSGKTTVARKLAAHIPEG--RCALIEHDSY 53


>gi|225465933|ref|XP_002268464.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1389

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELI-------HKMLMPLSKPFNWDFSHRPHVILVV 117
            + E +  +   K   V      V E          + ++ +         +   VI +V
Sbjct: 151 DLRENVEERSNRKRKRVPETTSLVVESRVYGRETDKEAILEVLLRDESIHDNEVCVIPIV 210

Query: 118 GVNGVGKTTVIGKLSKK----MSDAGLKVMLAAGDTF 150
           G+ GVGKTT + +L+       +   L+  +   D F
Sbjct: 211 GMGGVGKTT-LAQLAYHDDRVKNHFDLRAWVCVSDDF 246


>gi|225465927|ref|XP_002267974.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2697

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELI-------HKMLMPLSKPFNWDFSHRPHVILVV 117
            + E +  +   K   V      V E          + ++ +         +   VI +V
Sbjct: 151 DLRENVEERSNRKRKRVPETTSLVVESRVYGRETDKEAILEVLLRDESIHDNEVCVIPIV 210

Query: 118 GVNGVGKTTVIGKLSKK----MSDAGLKVMLAAGDTF 150
           G+ GVGKTT + +L+       +   L+  +   D F
Sbjct: 211 GMGGVGKTT-LAQLAYHDDRVKNHFDLRAWVCVSDDF 246


>gi|28378729|ref|NP_785621.1| exopolysaccharide biosynthesis protein; chain length determinator
           [Lactobacillus plantarum WCFS1]
 gi|28271566|emb|CAD64471.1| exopolysaccharide biosynthesis protein; chain length determinator
           [Lactobacillus plantarum WCFS1]
          Length = 235

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 4/123 (3%)

Query: 69  ELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV--GVNGVGKT 125
           +L  +       +Q   L     ++ + +  +    N+    +P   L++   + G GK+
Sbjct: 2   KLRRRVANMHTGIQLTTLTAPMSVVTEQVKTIRTNLNYAMVGKPLKTLMITSAIQGEGKS 61

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           TV   L+ + +  GL+V+L   D  R   I Q    +++       S   +D     Y  
Sbjct: 62  TVSSNLAVEYAKKGLQVLLVDADLRRPT-IHQTFAISNQRGVSSWLSGQLTDVNEAIYPV 120

Query: 186 FKQ 188
              
Sbjct: 121 LDH 123


>gi|6320064|ref|NP_010144.1| Arf2p [Saccharomyces cerevisiae S288c]
 gi|114124|sp|P19146|ARF2_YEAST RecName: Full=ADP-ribosylation factor 2
 gi|27065721|pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
           (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
 gi|171071|gb|AAA34430.1| ADP-ribosylation factor 2 (ARF2) [Saccharomyces cerevisiae]
 gi|1419224|emb|CAA65622.1| ARF2 [Saccharomyces cerevisiae]
 gi|1431211|emb|CAA98710.1| ARF2 [Saccharomyces cerevisiae]
 gi|51013511|gb|AAT93049.1| YDL137W [Saccharomyces cerevisiae]
 gi|151941864|gb|EDN60220.1| ADP-ribosylation factor 2 [Saccharomyces cerevisiae YJM789]
 gi|190405140|gb|EDV08407.1| ADP-ribosylation factor 2 [Saccharomyces cerevisiae RM11-1a]
 gi|207347048|gb|EDZ73357.1| YDL137Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273597|gb|EEU08530.1| Arf2p [Saccharomyces cerevisiae JAY291]
 gi|259145106|emb|CAY78370.1| Arf2p [Saccharomyces cerevisiae EC1118]
 gi|285810897|tpg|DAA11721.1| TPA: Arf2p [Saccharomyces cerevisiae S288c]
 gi|323305673|gb|EGA59413.1| Arf2p [Saccharomyces cerevisiae FostersB]
 gi|323309516|gb|EGA62726.1| Arf2p [Saccharomyces cerevisiae FostersO]
 gi|323334314|gb|EGA75695.1| Arf2p [Saccharomyces cerevisiae AWRI796]
 gi|323338421|gb|EGA79646.1| Arf2p [Saccharomyces cerevisiae Vin13]
 gi|323349422|gb|EGA83646.1| Arf2p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355809|gb|EGA87622.1| Arf2p [Saccharomyces cerevisiae VL3]
          Length = 181

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           SK F+  F ++   IL+VG++G GKTTV+ KL  
Sbjct: 6   SKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKL 39


>gi|148260817|ref|YP_001234944.1| ATPase [Acidiphilium cryptum JF-5]
 gi|146402498|gb|ABQ31025.1| ATPase AAA-2 domain protein [Acidiphilium cryptum JF-5]
          Length = 860

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 19/141 (13%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           EEL  +   ++ +    L  VS+ + +    L  P     S      L +G  GVGKT  
Sbjct: 561 EELRKRVVGQEAA----LRAVSDAVRRARAGLQDPNRPIGS-----FLFLGPTGVGKTET 611

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ + D    +        R    + ++  A           +G +   +  EA +
Sbjct: 612 CKALAEFLFDDERAM-------VRIDMSEFMEKHAVARLIGAPPGYVGYEEGGVLTEAVR 664

Query: 188 QAQAKKVDVLIIDTAGRLHNN 208
           +   +   V++ D   + H +
Sbjct: 665 R---RPYQVILFDEVEKAHED 682


>gi|86148133|ref|ZP_01066432.1| cell division protein FtsH [Vibrio sp. MED222]
 gi|85834050|gb|EAQ52209.1| cell division protein FtsH [Vibrio sp. MED222]
          Length = 376

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  IL+VG  G GKT     L+K ++     
Sbjct: 160 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGILLVGPPGTGKT----LLAKAIAGEAKV 213

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 214 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 257

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 258 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 306


>gi|108804765|ref|YP_644702.1| protein-tyrosine kinase [Rubrobacter xylanophilus DSM 9941]
 gi|108766008|gb|ABG04890.1| Protein-tyrosine kinase [Rubrobacter xylanophilus DSM 9941]
          Length = 239

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 61/200 (30%), Gaps = 45/200 (22%)

Query: 107 FSHRPHVILVV--GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS------------ 152
               P VI +   G    GK+TV   L   ++ A  + +L  GD  R             
Sbjct: 50  VDAPPRVISLTSPGPT-EGKSTVCANLGVVLAQANKRTLLIDGDLRRPSLHAVFDLRNIN 108

Query: 153 ---AAIDQLKIWADRTSADF----------VCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
               AI   +  ++  S             V        ++  + A  +   +  D ++I
Sbjct: 109 GLVNAITGERGLSEVLSEPLPNLRVCTSGPVPPNPAELLSSNRFAALVEEARQGFDYVLI 168

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT-TGQNALRQVEMFHAVA-- 256
           D+         L             +       VL VLDA  T + ALR+          
Sbjct: 169 DSPPVEPVADPL-------------ILATHADGVLLVLDAQRTRKGALRKALHDLRGVKA 215

Query: 257 GTTGLIMTKMDGTARGGGLI 276
              G +M   DG  RGG   
Sbjct: 216 NVLGTVMNNFDG-KRGGYAY 234


>gi|329725981|gb|EGG62458.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis
           VCU144]
          Length = 644

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHV---ILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAG 147
           IH + +    P     +        I ++G NGVGKTT+I  ++ K+    G  +  A  
Sbjct: 333 IHDLKIGYDSPITLPINLEVFKGDHIAIIGPNGVGKTTLIKTIAEKQHKLGGQIIFGANL 392

Query: 148 DTFRSAAIDQLKIW--ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
              +    DQ +    +++T  D+V  +              +    + DV  I      
Sbjct: 393 ---QIGYYDQKQAEFKSNKTILDYVWDQYPHMNEKDVRAVLGRFLFVQEDVKKIINDLSG 449

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG-----QNALRQVEMFHA 254
              + L   +  + R           +VL + + T       +  L Q      
Sbjct: 450 GEKARLQLALLMLQR----------DNVLILDEPTNHLDIDSKEMLEQALKDFE 493


>gi|320335565|ref|YP_004172276.1| lipopolysaccharide biosynthesis protein [Deinococcus maricopensis
           DSM 21211]
 gi|319756854|gb|ADV68611.1| lipopolysaccharide biosynthesis protein [Deinococcus maricopensis
           DSM 21211]
          Length = 542

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 46/105 (43%), Gaps = 10/105 (9%)

Query: 50  EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-IHKMLMPLSKPFNWDFS 108
           ED L+   + V     ++  L  +    D+    ++    +  +++ +  L      + +
Sbjct: 282 EDDLLA--LNVP-TLAVISRLRQR----DIVFSGIVRAARQAGLYEAIGFLRVNLLTNLA 334

Query: 109 HRPHVILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            +PH +++V     G GK++V   L+   + +G +V++   D  R
Sbjct: 335 SKPHPVVMVTSTAPGEGKSSVTATLADGFASSGQRVLIIDADLRR 379


>gi|323529925|ref|YP_004232077.1| type VI secretion ATPase, ClpV1 family [Burkholderia sp. CCGE1001]
 gi|323386927|gb|ADX59017.1| type VI secretion ATPase, ClpV1 family [Burkholderia sp. CCGE1001]
          Length = 891

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 614 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKMVTINMSEYQEAHSVSGLK- 671

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 672 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 721

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 722 TMDDAEGREIDFRNTLIILTSNVGSQAVMQA 752


>gi|221213375|ref|ZP_03586350.1| type VI secretion ATPase, ClpV1 family [Burkholderia multivorans
           CGD1]
 gi|221166827|gb|EED99298.1| type VI secretion ATPase, ClpV1 family [Burkholderia multivorans
           CGD1]
          Length = 889

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 612 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMITINMSEYQEAHSVSGLK- 669

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 670 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 719

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           ++   +       + L +L +  G  A+ Q 
Sbjct: 720 MMDDAEGREIDFRNTLIILTSNVGSAAVMQA 750


>gi|170290619|ref|YP_001737435.1| ATPase-like protein [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174699|gb|ACB07752.1| ATPase-like protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 545

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 12/84 (14%)

Query: 53  LIRSDIGVAVAQKIVE-----ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           L+  ++   +AQ+I+E     E+ +    ++      L ++ E   +++           
Sbjct: 145 LMERNLNPDLAQEIIEICDESEVASIGVGRNPERDEPLLELGERKGRVIGIPVGELTKH- 203

Query: 108 SHRPHVILVVGVNGVGKTTVIGKL 131
                 ILV+G  G GKTT + ++
Sbjct: 204 ------ILVIGQTGSGKTTTVKRI 221


>gi|157368730|ref|YP_001476719.1| ATP-dependent metalloprotease [Serratia proteamaculans 568]
 gi|157320494|gb|ABV39591.1| ATP-dependent metalloprotease FtsH [Serratia proteamaculans 568]
          Length = 643

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                           + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|32266378|ref|NP_860410.1| ATP-dependent zinc metalloproteinase [Helicobacter hepaticus ATCC
           51449]
 gi|32262428|gb|AAP77476.1| ATP-dependent zinc metalloproteinase [Helicobacter hepaticus ATCC
           51449]
          Length = 562

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 22/167 (13%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +V E + +++  L  P  +       P  +L+VG  GVGK T+I K            
Sbjct: 168 ISEVKEELLEIIDYLKNPKYYQELGISLPKGVLLVGPPGVGK-TMIAK------------ 214

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
              AG+    A +             +V                K      +D   ID  
Sbjct: 215 -AVAGE----AGVPFFYQSGSSFVQIYVGMGAKRVRELFMRAKAKSPSIIFIDE--IDAV 267

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           G+   N+        + ++L  +D     S + V+ AT     L + 
Sbjct: 268 GKARGNARSDEREATLNQLLTEMDGFEDSSGVIVIAATNKIEVLDEA 314


>gi|56421861|ref|YP_149179.1| capsular polysaccharide biosynthesis protein [Geobacillus
           kaustophilus HTA426]
 gi|56381703|dbj|BAD77611.1| capsular polysaccharide biosynthesis protein [Geobacillus
           kaustophilus HTA426]
          Length = 235

 Score = 37.9 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 28/155 (18%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K   + ++V      ++E    +   +   F  D   R  ++   G  G GK+T    L+
Sbjct: 14  KAERRLITVDNPKSPIAEQYRTIRTNIQFSF-IDAPLRSLIVTSTGP-GEGKSTTAANLA 71

Query: 133 KKMSDAGLKVMLAAGD--------TFRSAAIDQLK---------------IWADRTSADF 169
              +  G K +L   D        TFR      L                   D  S   
Sbjct: 72  VVFAQQGKKTLLIDADLRKPTVHYTFRLNNYKGLTNVLTGSAPLLSTCQATEIDHLSILT 131

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKV---DVLIIDT 201
                 + A  L+  A  Q   +     D++I DT
Sbjct: 132 SGPIPPNPAELLSSNAMAQCLEQLYETFDLVIFDT 166


>gi|332879985|ref|ZP_08447669.1| ATP-dependent metallopeptidase HflB [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681981|gb|EGJ54894.1| ATP-dependent metallopeptidase HflB [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 655

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 62/186 (33%), Gaps = 25/186 (13%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E+   +   +DV+      +  + I   L    K +       P   L+VG  G GKT  
Sbjct: 184 EKKENRVTFQDVAGLEGAKEEVQEIVDFLKNPDK-YTSLGGKIPRGALLVGPPGTGKT-- 240

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L+K ++        +   +                  +       S    L  +A +
Sbjct: 241 --LLAKAVAGEAQVPFFSLSGS---------------DFVEMFVGVGASRVRDLFKQAKE 283

Query: 188 QAQAKKVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           +A A    +  ID  GR    +++          + ++L  +D    H+ + VL AT   
Sbjct: 284 KAPAIIF-IDEIDAIGRARGKNVMTGANDERENTLNQLLTEMDGFGSHTNVIVLAATNRA 342

Query: 244 NALRQV 249
           + L + 
Sbjct: 343 DILDKA 348


>gi|325275691|ref|ZP_08141580.1| general secretory pathway protein E [Pseudomonas sp. TJI-51]
 gi|324099177|gb|EGB97134.1| general secretory pathway protein E [Pseudomonas sp. TJI-51]
          Length = 487

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 96  LMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT--FRS 152
           +    +        +PH I +V G  G GKTT +   +    +   + +L   D   +  
Sbjct: 226 MPAAVRAGFMSMLEKPHGIFLVTGPTGSGKTTTLYT-ALAYLNQESRNILTVEDPIEYHL 284

Query: 153 AAIDQLKIWAD 163
           A I Q ++   
Sbjct: 285 AGIGQTQVNPK 295


>gi|307353795|ref|YP_003894846.1| cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM
           11571]
 gi|307157028|gb|ADN36408.1| Cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM
           11571]
          Length = 279

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT    ++  +   G KV++   D  ++ A   L I  D  S +            
Sbjct: 12  GTGKTTSCINIAGFLQKKGEKVLVIDCDP-QANATSGLGINPDECSVNMY---------D 61

Query: 181 LAYEAFKQAQAKKVDVLIIDT 201
           +   AF+      +  +I+DT
Sbjct: 62  VYMNAFEGFPDVSIKDVIVDT 82


>gi|301598842|pdb|3NXS|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM FROM
           MYCOBACTERIUM Smegmatis Bound To Gdp
          Length = 329

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 24/166 (14%)

Query: 58  IGV-AVAQKIVE----ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           + V  +AQ I +     L       + +         +L+  ++       +   +    
Sbjct: 8   VNVHELAQSIRDGDRSALARAITLVESTRADHREQAQQLLLDLMPEAGSAMHVGIT---- 63

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAA--------IDQLKIWA 162
                GV GVGK+T I  L   + +AG +V + A D  + R+          + +L +  
Sbjct: 64  -----GVPGVGKSTTIEALGMHLIEAGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHP 118

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           D        S      A    E     +A   DV++++T G   + 
Sbjct: 119 DAYIRPSPTSGTLGGVAKATRETIVLLEAAGYDVILVETVGVGQSE 164


>gi|257455350|ref|ZP_05620585.1| ATP-dependent helicase HrpA [Enhydrobacter aerosaccus SK60]
 gi|257447312|gb|EEV22320.1| ATP-dependent helicase HrpA [Enhydrobacter aerosaccus SK60]
          Length = 1404

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 19/130 (14%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----- 166
            VI+V G  G GKTT + K++  ++  G+   +      R AA       A+        
Sbjct: 82  QVIIVAGETGSGKTTQLPKIA-MLAGRGVTGQIGHTQPRRLAARSVANRIAEELGETLGQ 140

Query: 167 -----ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSILMAGI 215
                  F           L  +    A+          D +IID A     +  +   +
Sbjct: 141 TVSFKVRFTEQGSSDSIVKLMTDGILLAEMAHDKFLSRYDTIIIDEA--HERSLNIDFIM 198

Query: 216 GKMIRVLKRL 225
           G + R+L + 
Sbjct: 199 GYLKRLLPKR 208


>gi|164659844|ref|XP_001731046.1| hypothetical protein MGL_2045 [Malassezia globosa CBS 7966]
 gi|159104944|gb|EDP43832.1| hypothetical protein MGL_2045 [Malassezia globosa CBS 7966]
          Length = 182

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 23/150 (15%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT--FRSAAIDQLKIWADRTSADFVC 171
           +L++G++  GKTT++ KL  + S   +  +    +T  +R+   +   +    +      
Sbjct: 20  VLMLGLDNAGKTTILYKLKLRQSVKTIPTVGFNVETISYRNIKFNVWDVGGQDSIRPLWR 79

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                    +                ++D+  R   +         + R+L   D    H
Sbjct: 80  HYYTGTQGLI---------------YVVDSRDRARIDEAREE----LHRILS--DREMRH 118

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
            VL V             +      G   +
Sbjct: 119 CVLLVFANKQDLAGAMSPQELTDRLGLQAM 148


>gi|187477450|ref|YP_785474.1| ABC transporter ATP-binding protein [Bordetella avium 197N]
 gi|115422036|emb|CAJ48559.1| ABC transporter, ATP-binding protein [Bordetella avium 197N]
          Length = 251

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-TFRS 152
           +VG NG GKTT+ G LS  +      V     D T R 
Sbjct: 36  LVGPNGAGKTTLFGLLSGFLKPGSGSVHFGGADITGRP 73


>gi|57237682|ref|YP_178930.1| molybdopterin-guanine dinucleotide biosynthesis protein MobB
           [Campylobacter jejuni RM1221]
 gi|57166486|gb|AAW35265.1| molybdopterin-guanine dinucleotide biosynthesis protein MobB
           [Campylobacter jejuni RM1221]
 gi|315058291|gb|ADT72620.1| Putative ATP/GTP binding protein [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 163

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++   G +  GKTT+I K++       LKV++   D
Sbjct: 5   IMAFSGPSNSGKTTLITKIANNFLQQNLKVLIIKHD 40


>gi|134294578|ref|YP_001118313.1| ATPase [Burkholderia vietnamiensis G4]
 gi|134137735|gb|ABO53478.1| ATPase AAA-2 domain protein [Burkholderia vietnamiensis G4]
          Length = 890

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 613 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMVTINMSEYQEAHSVSGLK- 670

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 671 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 720

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 721 TMDDAEGREIDFRNTLIILTSNVGSAAVMQA 751


>gi|302855417|ref|XP_002959203.1| hypothetical protein VOLCADRAFT_100603 [Volvox carteri f.
           nagariensis]
 gi|300255433|gb|EFJ39740.1| hypothetical protein VOLCADRAFT_100603 [Volvox carteri f.
           nagariensis]
          Length = 1471

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTS 166
               V++VVG  G GKTT   ++++ + + G       G T   R AA+   K  ++   
Sbjct: 804 RENQVVVVVGETGSGKTT---QMTQYLREEGYTKYGIIGCTQPRRVAAMSVAKRVSEEMG 860

Query: 167 AD 168
            +
Sbjct: 861 VE 862


>gi|291243014|ref|XP_002741400.1| PREDICTED: YME1-like 1-like [Saccoglossus kowalevskii]
          Length = 680

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 88/288 (30%), Gaps = 68/288 (23%)

Query: 6   VASESLSWIRKLTKGFASTSLK----LKEGITDIISSRRLDDGVRE-------------- 47
           + SE    +  L     + S K    L E I   + S ++ +  R+              
Sbjct: 150 MPSEQTPGLGSLDTILQNLSSKEKVNLSENIEKALRSEKIQENERDSFKTGFVEGYLRSQ 209

Query: 48  -ELED----------LLIR------------SDIGVAVAQKIVEELLTKRYAKDVSVQRV 84
            E++           +LI             + + ++ AQ  V+ +  K    D    + 
Sbjct: 210 KEIKKSDNYSRWLSVILIAIIVYCIYKLSLVARVSISTAQ--VDAMNVKNIGFD--DVQG 265

Query: 85  LYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +  + +  ++  L  P  +       P  +L+VG  G GKT     L++         
Sbjct: 266 VEEAKQELKDVVSFLQDPEKYTSLGGKLPKGVLLVGPPGTGKT----LLAR--------A 313

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +    D      +             FV S         A           VD L  D+ 
Sbjct: 314 VAGEAD------VPFFYASGSEFDNMFVGSGARRVRDLFAEAKANTPCVIFVDEL--DSV 365

Query: 203 GRLHNNSILMAGI-GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           G    +S L       + ++L  +D    +  + V+ AT    AL   
Sbjct: 366 GGKRVDSPLHPYSRQTINQLLAEMDGFKQNEGVIVIGATNFAEALDSA 413


>gi|257438564|ref|ZP_05614319.1| putative cobalamin synthesis protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257199143|gb|EEU97427.1| putative cobalamin synthesis protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 311

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID------QLKIWADR 164
             V L+ G  G GKTT + + +  ++  G  V +   D     A++      Q  +  +R
Sbjct: 2   VQVDLITGFLGAGKTTFLRRYAAYLTAQGHHVCILENDF---GAVNVDAMLVQ-DLLGER 57

Query: 165 TSADFVCSE-IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
              + +                      +  D ++++ +G    + 
Sbjct: 58  CEIETISGGCDCDTHQRRMRTKLISMAMRGFDRVVVEPSGIFDVDE 103


>gi|237732885|ref|ZP_04563366.1| chromosome partitioning protein [Mollicutes bacterium D7]
 gi|229384038|gb|EEO34129.1| chromosome partitioning protein [Coprobacillus sp. D7]
          Length = 118

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 99  LSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + +    +   RP VI +     GVGKTT    ++  +S  G K ++   D
Sbjct: 1   MEENKTVELEKRPRVISVFSSKGGVGKTTTSTNIAYNLSQFGYKCLVIDFD 51


>gi|323340086|ref|ZP_08080351.1| multidrug ABC superfamily ATP binding cassette transporter, ABC
           protein [Lactobacillus ruminis ATCC 25644]
 gi|323092463|gb|EFZ35070.1| multidrug ABC superfamily ATP binding cassette transporter, ABC
           protein [Lactobacillus ruminis ATCC 25644]
          Length = 618

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           L K FN++ ++   ++ +VG  G GKTT+I  L +     G  + +   DT R  + D+L
Sbjct: 384 LMKDFNFE-ANPGKMVAIVGPTGAGKTTLINLLERFYEIKGGVIRMDGIDT-RKMSRDEL 441

Query: 159 K 159
           +
Sbjct: 442 R 442


>gi|294817179|ref|ZP_06775821.1| Daunorubicin resistance ABC transporter ATP-binding subunit
           [Streptomyces clavuligerus ATCC 27064]
 gi|326446039|ref|ZP_08220773.1| daunorubicin resistance ABC transporter ATPase subunit
           [Streptomyces clavuligerus ATCC 27064]
 gi|294321994|gb|EFG04129.1| Daunorubicin resistance ABC transporter ATP-binding subunit
           [Streptomyces clavuligerus ATCC 27064]
          Length = 422

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            +G NG GK+T I  L         +  +A  D 
Sbjct: 78  FLGPNGAGKSTTIALLCALARPTAGRATVAGADV 111


>gi|254390190|ref|ZP_05005410.1| CinT protein [Streptomyces clavuligerus ATCC 27064]
 gi|197703897|gb|EDY49709.1| CinT protein [Streptomyces clavuligerus ATCC 27064]
          Length = 360

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            +G NG GK+T I  L         +  +A  D 
Sbjct: 16  FLGPNGAGKSTTIALLCALARPTAGRATVAGADV 49


>gi|254426764|ref|ZP_05040473.1| hypothetical protein S7335_919 [Synechococcus sp. PCC 7335]
 gi|196187341|gb|EDX82314.1| hypothetical protein S7335_919 [Synechococcus sp. PCC 7335]
          Length = 208

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGK+TV   L+  ++  G  V +   D  R+    Q +   +                 
Sbjct: 12  GVGKSTVSLSLAHWLAQKGHTVAVVDDDRNRTVTKWQARADTN---------PPSQRPGF 62

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
             +   + AQA   D  I+DTA  + + +
Sbjct: 63  KVHPFEEMAQADGCDYGILDTAASVSDET 91


>gi|195436268|ref|XP_002066091.1| GK22119 [Drosophila willistoni]
 gi|194162176|gb|EDW77077.1| GK22119 [Drosophila willistoni]
          Length = 520

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEEL 70
            T GF S+S  +   + ++  +  + + +R+E++  LI S     V Q+++E L
Sbjct: 316 FTAGFESSSSTMSFALYELAKNLEIQERLRDEIKKALIES--KGQVTQQMIESL 367


>gi|192807256|dbj|BAG49729.1| disease resistance protein [Capsicum chinense]
          Length = 1324

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 35/141 (24%)

Query: 38  SRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKR----------YAKDVSVQRVLYD 87
            RRL D     +++ L           K +EEL  +             K +  +     
Sbjct: 120 GRRLSDDFFLNIKEKL-------ENTIKSLEELEKQIGRLGLQRYFDSGKKLETRTPSTS 172

Query: 88  VSE--------LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK------ 133
           V E         I K++  L      + +    V+ +VG+ G+GKTT + K +       
Sbjct: 173 VVESDVFGRKNEIEKLIDHLMSKEASEKNM--TVVPIVGMGGMGKTT-LAKAAYNAEKVK 229

Query: 134 -KMSDAGLKVMLAAGDTFRSA 153
              +      +    D FR  
Sbjct: 230 NHFNLKAWFCVSEPYDAFRIT 250


>gi|223937028|ref|ZP_03628936.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514]
 gi|223894309|gb|EEF60762.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514]
          Length = 567

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 22/167 (13%)

Query: 85  LYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +    + +++  L  P  +    S  P  +L++G  G GKT     L+K ++      
Sbjct: 157 VEEAKAEVQEVVDFLRDPQKYSKMGSKLPKGVLLIGPPGTGKTM----LAKAIAGE---- 208

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
                     A  +   +     +  +V              A +Q     +D   ID  
Sbjct: 209 ----------ANANFFSVHGSDFTEVYVGVGAKRVRQLFKQAAKQQPSIIFIDE--IDCV 256

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           G+             +  +L  +D    +  + V+ AT     L   
Sbjct: 257 GKNRKFDTNGEQQQTINALLAAMDGFEGNEGVVVIAATNRPEDLDDA 303


>gi|297729065|ref|NP_001176896.1| Os12g0273266 [Oryza sativa Japonica Group]
 gi|77554619|gb|ABA97415.1| NB-ARC domain containing protein [Oryza sativa Japonica Group]
 gi|222630743|gb|EEE62875.1| hypothetical protein OsJ_17678 [Oryza sativa Japonica Group]
 gi|255670223|dbj|BAH95624.1| Os12g0273266 [Oryza sativa Japonica Group]
          Length = 901

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 85  LYDVSELIHKMLMPLSKPFNW---DFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAG 139
           LY  +E + ++  P  K   W   D S +  V+ +VG  G+GKTT    L+        G
Sbjct: 159 LYVEAEKLVRIDGPREKIIEWLEKDESQKLKVVCIVGFGGLGKTT----LANQVYHKMKG 214

Query: 140 LKVMLAAGDTFR 151
                +     R
Sbjct: 215 QFDCSSCMPVSR 226


>gi|19173546|ref|NP_597349.1| ADP RIBOSYLATION FACTOR-LIKE GTP BINDING PROTEIN [Encephalitozoon
           cuniculi GB-M1]
 gi|74697575|sp|Q8SS09|SAR1_ENCCU RecName: Full=Small COPII coat GTPase SAR1
 gi|19170752|emb|CAD26526.1| ADP RIBOSYLATION FACTOR-LIKE GTP BINDING PROTEIN [Encephalitozoon
           cuniculi GB-M1]
          Length = 221

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           ++Q  L  V   + +    + + F      +P  IL +G++  GKTT++ KL
Sbjct: 4   NIQEYLGVVKAKLTEFYEKVFQNFVKSLFGKPSSILFLGIDNAGKTTLVNKL 55


>gi|116492420|ref|YP_804155.1| deoxynucleoside kinase [Pediococcus pentosaceus ATCC 25745]
 gi|116102570|gb|ABJ67713.1| Deoxynucleoside kinase [Pediococcus pentosaceus ATCC 25745]
          Length = 219

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM 135
           VI+  G+ GVGKTT+ GK++   
Sbjct: 2   VIITAGMIGVGKTTLTGKIADYY 24


>gi|86150275|ref|ZP_01068502.1| molybdopterin-guanine dinucleotide biosynthesis protein MobB
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597592|ref|ZP_01100826.1| molybdopterin-guanine dinucleotide biosynthesis protein MobB
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|148926542|ref|ZP_01810224.1| putative ATP/GTP binding protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|205356339|ref|ZP_03223104.1| putative ATP/GTP binding protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218562469|ref|YP_002344248.1| putative molybdopterin-guanine dinucleotide biosynthesis protein
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85839391|gb|EAQ56653.1| molybdopterin-guanine dinucleotide biosynthesis protein MobB
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190184|gb|EAQ94159.1| molybdopterin-guanine dinucleotide biosynthesis protein MobB
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360175|emb|CAL34969.1| putative molybdopterin-guanine dinucleotide biosynthesis protein
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|145845236|gb|EDK22330.1| putative ATP/GTP binding protein [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|205345724|gb|EDZ32362.1| putative ATP/GTP binding protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|284926086|gb|ADC28438.1| molybdopterin-guanine dinucleotide biosynthesis protein MobB
           [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315926515|gb|EFV05897.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315929373|gb|EFV08578.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 163

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +I   G +  GKTT+I K++       LKV++   D
Sbjct: 5   IIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHD 40


>gi|301610192|ref|XP_002934633.1| PREDICTED: peroxisome biogenesis factor 1 [Xenopus (Silurana)
           tropicalis]
          Length = 1205

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 21/112 (18%)

Query: 91  LIHKMLM-PLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++H +L  PLS+      S  R   +L+ G  G GK+T    L+K +             
Sbjct: 563 VVHCLLGRPLSRQLVASASGLRSGGVLLCGPKGSGKST----LAKALCKE---------- 608

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
                A +QL+   +      +  +   +      EAF++A  ++  V+++D
Sbjct: 609 -----ASEQLEAHVEEIDCKLLKGKNVENIIQTLEEAFEEAAWRQPSVILLD 655


>gi|270265053|ref|ZP_06193316.1| ATP-dependent metalloprotease [Serratia odorifera 4Rx13]
 gi|270040987|gb|EFA14088.1| ATP-dependent metalloprotease [Serratia odorifera 4Rx13]
          Length = 646

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVSELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                           + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|268610465|ref|ZP_06144192.1| uridine kinase (uridine monophosphokinase) [Ruminococcus
           flavefaciens FD-1]
          Length = 306

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           E+       + S    +  V+   +  L  +      +   RP VIL+ G +G GKTT  
Sbjct: 4   EITRINQGIEESPLDYVKYVNMDYYYKLGCIVDEIEKNCHTRP-VILIAGPSGSGKTTTA 62

Query: 129 GKLSKKMSDAGLKVMLAAGDTF 150
             L K + + G +    + D +
Sbjct: 63  MMLEKMLDERGHETHTISMDNY 84


>gi|254558031|ref|YP_003064448.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Lactobacillus
           plantarum JDM1]
 gi|254046958|gb|ACT63751.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Lactobacillus
           plantarum JDM1]
          Length = 704

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 13/151 (8%)

Query: 2   SNQKVASESLSWIR--KLTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSD 57
           + ++ A +S  + +   + K    T  K+K+       +  +DD     E L  + + +D
Sbjct: 343 AAKEAAVKSEDFTKAADIKKSIEETKQKIKKTDQKEKIAATIDDVAQSVERLTGIPV-AD 401

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G    + + + L  +  +K +     +  V++ I +     S+             L V
Sbjct: 402 MGANDIEHL-KNLDKRLKSKVIGQDEAVEMVAKAIRRNRAGFSEG-----DQPIGSFLFV 455

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           G  GVGKT +  +L+  +   G K  +   D
Sbjct: 456 GPTGVGKTELAKQLA--LDMFGNKNAIIRLD 484


>gi|257064193|ref|YP_003143865.1| ATPase family protein associated with various cellular activities
           (AAA) [Slackia heliotrinireducens DSM 20476]
 gi|256791846|gb|ACV22516.1| ATPase family protein associated with various cellular activities
           (AAA) [Slackia heliotrinireducens DSM 20476]
          Length = 632

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 26/130 (20%)

Query: 20  GFASTSL-KL---KEGITDIISSRRLDDGVREELEDLLIRSDIGVA-------------- 61
            F+S S   L   +E   D+  S ++ +   +EL  L I+ D                  
Sbjct: 236 AFSSLSDDNLEDVREKFIDVTDSMKVLE--LDELRRLRIKGDTSPEQFPELVDIYKYGLK 293

Query: 62  ------VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
                 +  K+ ++   K   +     R L  +  ++ + +M  S   +   S    V+ 
Sbjct: 294 ENKWASIVDKLRDDPEEKLRRRVKGQDRALSKIVTVLKRSVMGFSGMQHSSGSKPKGVLF 353

Query: 116 VVGVNGVGKT 125
           + G  G GKT
Sbjct: 354 LAGPTGTGKT 363


>gi|227826486|ref|YP_002828265.1| LAO/AO transporter ATPase [Sulfolobus islandicus M.14.25]
 gi|229583648|ref|YP_002842149.1| LAO/AO transport system ATPase [Sulfolobus islandicus M.16.27]
 gi|227458281|gb|ACP36967.1| LAO/AO transport system ATPase [Sulfolobus islandicus M.14.25]
 gi|228018697|gb|ACP54104.1| LAO/AO transport system ATPase [Sulfolobus islandicus M.16.27]
          Length = 315

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 70/213 (32%), Gaps = 32/213 (15%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++EE L         +   +  +++     L  LSK      S   HVI + G+ G GK
Sbjct: 8   KLIEEALNGNELAIARLLTKIEYMTDEGISALGALSK-----RSGNAHVIGITGIPGAGK 62

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI---------DQLKIWADRTSADFVCS-EI 174
           +T+IG L ++    G +V +   D      +          Q K   +      + S   
Sbjct: 63  STLIGGLIQEYVSRGHRVGVIVIDPSSPYTMGSFMGNRLRFQDKTMLENVFVRSIGSRGY 122

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
               +A A    +       D +II+T G    ++                        +
Sbjct: 123 LGGISAEALMLTEALDGLGYDKIIIETVGAGQTDTE----------------VEQSVHTI 166

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            V+      + ++ ++      G    ++ K D
Sbjct: 167 LVVTIPGAGDDIQALKAGIMEIG-DIYVLNKTD 198


>gi|225575658|ref|ZP_03784268.1| hypothetical protein RUMHYD_03751 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037115|gb|EEG47361.1| hypothetical protein RUMHYD_03751 [Blautia hydrogenotrophica DSM
           10507]
          Length = 607

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 105 WDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            +FS +P   I +VG  G GKTT++  L +     G K+ L   DT
Sbjct: 389 INFSAKPGQKIAIVGSTGAGKTTLVNLLMRFYERNGGKIFLDGTDT 434


>gi|187934506|ref|YP_001885449.1| ribosomal biogenesis GTPase [Clostridium botulinum B str. Eklund
           17B]
 gi|187722659|gb|ACD23880.1| GTP-binding protein [Clostridium botulinum B str. Eklund 17B]
          Length = 285

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-----IL 115
            V ++ ++ L TK   K + V  +  D  + I  ML+ L K  +     +  V     ++
Sbjct: 66  KVTKEWIKHL-TKDDVKVLEVNCLKGDGLKAIKPMLLSLLKEKHDRLRAKGMVNITTRVM 124

Query: 116 VVGVNGVGKTTVIGKLSK 133
           VVG+  VGK+T I K+++
Sbjct: 125 VVGIPNVGKSTFINKMAR 142


>gi|120612797|ref|YP_972475.1| general secretory pathway protein E [Acidovorax citrulli AAC00-1]
 gi|120591261|gb|ABM34701.1| type II secretion system protein E (GspE) [Acidovorax citrulli
           AAC00-1]
          Length = 578

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 110 RPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---FRSAAIDQLKIWADRT 165
           +PH IL+V G  G GKTT +   +           +   +    ++   I+Q+++     
Sbjct: 324 KPHGILLVTGPTGSGKTTTL--YAALSKIDAESNKIITVEDPVEYQLEGINQIQVHPQIN 381


>gi|161526093|ref|YP_001581105.1| type VI secretion ATPase [Burkholderia multivorans ATCC 17616]
 gi|189349193|ref|YP_001944821.1| protease associated ATPase [Burkholderia multivorans ATCC 17616]
 gi|160343522|gb|ABX16608.1| type VI secretion ATPase, ClpV1 family [Burkholderia multivorans
           ATCC 17616]
 gi|189333215|dbj|BAG42285.1| protease associated ATPase [Burkholderia multivorans ATCC 17616]
          Length = 889

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 612 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMITINMSEYQEAHSVSGLK- 669

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 670 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 719

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
           ++   +       + L +L +  G  A+ Q 
Sbjct: 720 MMDDAEGREIDFRNTLIILTSNVGSAAVMQA 750


>gi|46446362|ref|YP_007727.1| endopeptidase Clp ATP-binding chain [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|54035763|sp|Q6MD97|CLPB_PARUW RecName: Full=Chaperone protein ClpB
 gi|46400003|emb|CAF23452.1| probable endopeptidase Clp ATP-binding chain [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 868

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 19/141 (13%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            EL  +   ++++    +  VSE I +    LS P     +    V L +G  GVGK T 
Sbjct: 565 NELEKRVVGQEIA----VSAVSEAIRRSRSGLSDP-----NRPMGVFLFLGPTGVGK-TE 614

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           + K +           L   D          +     T +  + S  G        +  +
Sbjct: 615 LAK-ALAFQLFNQDEALIRLDMS--------EYMEKHTVSKLIGSPPGYIGYEEGGQLTE 665

Query: 188 QAQAKKVDVLIIDTAGRLHNN 208
             + +   V++ D   + H +
Sbjct: 666 ALRRRPYAVVLFDEIEKAHPD 686


>gi|127512115|ref|YP_001093312.1| putative ABC transporter ATP-binding protein [Shewanella loihica
           PV-4]
 gi|126637410|gb|ABO23053.1| ABC transporter-related protein [Shewanella loihica PV-4]
          Length = 554

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 23/127 (18%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I V+G+NG GK+T++              ++A  DT     I+            ++  E
Sbjct: 35  IGVLGLNGSGKSTLL-------------RIMAGIDT----EIEGEARPMQDLKIGYLPQE 77

Query: 174 IGSDAAALAYEAFKQAQAK------KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              D      EA ++A ++      ++D +    A    +   L    G++  +++  D 
Sbjct: 78  PKLDPQQTVREAIEEAVSEAKNALTRLDEVYALYAEPDADFDALAKEQGELEAIIQAQDA 137

Query: 228 HAPHSVL 234
           H   ++L
Sbjct: 138 HNLDNIL 144


>gi|332668624|ref|YP_004451631.1| ABC transporter-like protein [Cellulomonas fimi ATCC 484]
 gi|332337661|gb|AEE44244.1| ABC transporter related protein [Cellulomonas fimi ATCC 484]
          Length = 219

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 1/91 (1%)

Query: 97  MPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
             +    + D +  P  V+ +VG +G GKTTV+  L+         V     D  R++  
Sbjct: 17  GGVDACRDVDLTTEPGKVVALVGPSGSGKTTVLSVLALLQRPTSGHVWFGGRDLARTSER 76

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           ++ ++        F    +     A+   A 
Sbjct: 77  ERGRVGRQEVGMVFQRGVLVEHLTAVENVAL 107


>gi|315638479|ref|ZP_07893656.1| molybdopterin-guanine dinucleotide biosynthesis protein MobB
           [Campylobacter upsaliensis JV21]
 gi|315481470|gb|EFU72097.1| molybdopterin-guanine dinucleotide biosynthesis protein MobB
           [Campylobacter upsaliensis JV21]
          Length = 165

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++   G +  GKTT+I KL++     GLKV++   D
Sbjct: 5   IMAFSGPSNSGKTTLIEKLARYFMQKGLKVLVIKHD 40


>gi|326791435|ref|YP_004309256.1| phosphoribulokinase/uridine kinase [Clostridium lentocellum DSM
           5427]
 gi|326542199|gb|ADZ84058.1| phosphoribulokinase/uridine kinase [Clostridium lentocellum DSM
           5427]
          Length = 552

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 12/95 (12%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV--IL 115
           +GV     +   ++ K    +      L  +SE +H+  +            + H+  +L
Sbjct: 243 LGVDTVSAL-NNVIAKGEIDE------LIKISEALHEKRIA---EIADQIVEKKHIKLVL 292

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           + G +  GKTT   +L  ++   G+K  + + D +
Sbjct: 293 IAGPSSSGKTTSAKRLGIQLKVNGMKPHVVSIDDY 327


>gi|260438012|ref|ZP_05791828.1| ABC transporter, ATP-binding protein [Butyrivibrio crossotus DSM
           2876]
 gi|292809492|gb|EFF68697.1| ABC transporter, ATP-binding protein [Butyrivibrio crossotus DSM
           2876]
          Length = 451

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
               + + ILV G+ G GKTT++ KL +   D 
Sbjct: 7   KIVEKGNFILVCGMTGSGKTTLLKKLKEYFKDN 39


>gi|254487069|ref|ZP_05100274.1| urease accessory protein UreG [Roseobacter sp. GAI101]
 gi|214043938|gb|EEB84576.1| urease accessory protein UreG [Roseobacter sp. GAI101]
          Length = 209

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 27/183 (14%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQL 158
            H P  I + G  G GKTT+   L + M D    + +   D +         R   + Q 
Sbjct: 4   PHGPLRIGIGGPVGAGKTTLTAALCRAMRDR-WSIAVITNDIYTQEDAEALMRMQVLPQD 62

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +I    T      +     +  LA  A  Q +   +D ++I++ G       L A     
Sbjct: 63  RIIGVETGGCPHTAIREDASINLAAVARMQERHADLDCILIESGG-----DNLSATFS-- 115

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
                   P      L V+D   G+   R  +   A+  +  LI+ K D     G  + +
Sbjct: 116 --------PELADITLYVIDVAAGEEIPR--KGGPAITKSDILIINKTDLAPYVGASLDV 165

Query: 279 VVT 281
           +  
Sbjct: 166 MDR 168


>gi|210610525|ref|ZP_03288451.1| hypothetical protein CLONEX_00641 [Clostridium nexile DSM 1787]
 gi|210152384|gb|EEA83390.1| hypothetical protein CLONEX_00641 [Clostridium nexile DSM 1787]
 gi|295101083|emb|CBK98628.1| ABC-type multidrug transport system, ATPase component
           [Faecalibacterium prausnitzii L2-6]
          Length = 286

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 104 NWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           N  F+     I+ ++G NG GKTT I  +   +   G  V +   D
Sbjct: 21  NISFTLPKGYIMGLIGPNGSGKTTTIKLILNMLKRTGGTVKVMGLD 66


>gi|14794890|gb|AAK73498.1|AF357202_1 AmphG [Streptomyces nodosus]
          Length = 606

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 28/154 (18%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           VE +  +   +DVS +               PL +  +        V  VVG +G GKTT
Sbjct: 353 VERVEGRVEFQDVSFRYSPD----------TPLIEGLSLSVEPGSTV-AVVGPSGAGKTT 401

Query: 127 VIGKLSKKMSDAGLKVMLAAGDT---------FRSAAIDQLKIWADRTSADFVCSEIGSD 177
           V   L +       +++L   DT          R   + Q       T A+ +       
Sbjct: 402 VANLLMRFYEIDSGRILLDGTDTAAMNRDDLRSRFGLVLQDTWLFKGTIAENIAYGSPGA 461

Query: 178 AAALAYEAFKQAQA--------KKVDVLIIDTAG 203
             A   EA +   A        +  D ++ D +G
Sbjct: 462 TRADIVEAARATYADRFIRTLSQGYDTVLDDESG 495


>gi|51247055|ref|YP_066938.1| related to capsular polysaccharide biosynthesis protein
           [Desulfotalea psychrophila LSv54]
 gi|50878092|emb|CAG37948.1| related to capsular polysaccharide biosynthesis protein
           [Desulfotalea psychrophila LSv54]
          Length = 252

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 106 DFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
               +  V+LV   + G GK+T +  L++ M+  G  V++   D  R  
Sbjct: 43  SLDKKLQVLLVTSALPGEGKSTTVANLARTMAQMGQSVLMVDADLRRPG 91


>gi|28897070|ref|NP_796675.1| adenylylsulfate kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837912|ref|ZP_01990579.1| adenylylsulfate kinase [Vibrio parahaemolyticus AQ3810]
 gi|260363944|ref|ZP_05776683.1| adenylyl-sulfate kinase [Vibrio parahaemolyticus K5030]
 gi|260877987|ref|ZP_05890342.1| adenylyl-sulfate kinase [Vibrio parahaemolyticus AN-5034]
 gi|260896355|ref|ZP_05904851.1| adenylyl-sulfate kinase [Vibrio parahaemolyticus Peru-466]
 gi|260900683|ref|ZP_05909078.1| adenylyl-sulfate kinase [Vibrio parahaemolyticus AQ4037]
 gi|31076646|sp|Q87SX6|CYSC_VIBPA RecName: Full=Adenylyl-sulfate kinase; AltName: Full=APS kinase;
           AltName: Full=ATP adenosine-5'-phosphosulfate
           3'-phosphotransferase; AltName:
           Full=Adenosine-5'-phosphosulfate kinase
 gi|28805278|dbj|BAC58559.1| adenylylsulfate kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748690|gb|EDM59541.1| adenylylsulfate kinase [Vibrio parahaemolyticus AQ3810]
 gi|308085182|gb|EFO34877.1| adenylyl-sulfate kinase [Vibrio parahaemolyticus Peru-466]
 gi|308089881|gb|EFO39576.1| adenylyl-sulfate kinase [Vibrio parahaemolyticus AN-5034]
 gi|308110242|gb|EFO47782.1| adenylyl-sulfate kinase [Vibrio parahaemolyticus AQ4037]
 gi|308112581|gb|EFO50121.1| adenylyl-sulfate kinase [Vibrio parahaemolyticus K5030]
 gi|328471872|gb|EGF42749.1| adenylylsulfate kinase [Vibrio parahaemolyticus 10329]
          Length = 205

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 99  LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           + K F  +    +P V+   G++G GK+TV G L  ++++ G    L  GD  R  
Sbjct: 19  VDKQFRAELKKQKPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVRHG 74


>gi|46206271|ref|ZP_00047502.2| COG0465: ATP-dependent Zn proteases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 264

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 65  KIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           K++ E   +   +DV+ V+    D+ E++  +  P  + F       P  +L+VG  G G
Sbjct: 9   KLINEAHGRVSFEDVAGVEEAKEDLQEIVEFLRDP--QKFQRLGGRIPRGVLLVGPPGTG 66

Query: 124 KT 125
           KT
Sbjct: 67  KT 68


>gi|46190586|ref|ZP_00121327.2| COG1132: ABC-type multidrug transport system, ATPase and permease
           components [Bifidobacterium longum DJO10A]
 gi|189440387|ref|YP_001955468.1| multidrug ABC transporter ATPase/permease [Bifidobacterium longum
           DJO10A]
 gi|227546906|ref|ZP_03976955.1| possible xenobiotic-transporting ATPase [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|312133719|ref|YP_004001058.1| mdlb3 [Bifidobacterium longum subsp. longum BBMN68]
 gi|189428822|gb|ACD98970.1| ABC-type multidrug transport system ATPase and permease component
           [Bifidobacterium longum DJO10A]
 gi|227212586|gb|EEI80474.1| possible xenobiotic-transporting ATPase [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|291516619|emb|CBK70235.1| ABC-type multidrug transport system, ATPase and permease components
           [Bifidobacterium longum subsp. longum F8]
 gi|311772993|gb|ADQ02481.1| MdlB3 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 607

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 59/184 (32%), Gaps = 27/184 (14%)

Query: 100 SKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSA 153
            KP   DFS        + +VG  G GKTT++  L +    +G  + +   DT    R  
Sbjct: 380 GKPIINDFSASVSAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWN 439

Query: 154 AIDQLKIWADRT---------SADFVCSEIGSDAAALAYEAFK-----QAQAKKVDVLII 199
             DQ  +    T         +  +    + +     A +A       ++     D ++ 
Sbjct: 440 VHDQFSMVLQDTWVFRGTVRENVAYSKPGVTNKQIEDACKAVGLDHFIRSLPDGYDTVLD 499

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D        S L  G  +++ + + +   AP  +L    ++        ++         
Sbjct: 500 D-------KSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVG 552

Query: 260 GLIM 263
               
Sbjct: 553 RTSF 556


>gi|332686153|ref|YP_004455927.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Melissococcus
           plutonius ATCC 35311]
 gi|332370162|dbj|BAK21118.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Melissococcus
           plutonius ATCC 35311]
          Length = 760

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 78/210 (37%), Gaps = 44/210 (20%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           M NQ+V+ E    I            K+ EGI +  +   + + ++E+ +  L       
Sbjct: 396 MKNQQVSDEKAPTID----------EKVIEGIVEERTGIPVGE-LKEKEKTQL------- 437

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              + + ++L      +D +V R    V++ I +  + L K      S      L VG  
Sbjct: 438 ---KNLSDDLRAHVIGQDDAVDR----VAKAIRRNRVGLGKQNRPIGS-----FLFVGPT 485

Query: 121 GVGKTTVIGKLSKKMSDA--GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GVGKT     L+++++    G    +   D          +     + +  + S  G   
Sbjct: 486 GVGKTE----LARQLAYELFGSDNSMIRFDMS--------EYMEKHSVSRLIGSPPGYVG 533

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
              A +  +Q +     ++++D   + H +
Sbjct: 534 YEEAGQLTEQIRRNPYSLVLLDEVEKAHPD 563


>gi|296537353|ref|ZP_06899217.1| ABC superfamily ATP binding cassette transporter [Roseomonas
           cervicalis ATCC 49957]
 gi|296262320|gb|EFH09081.1| ABC superfamily ATP binding cassette transporter [Roseomonas
           cervicalis ATCC 49957]
          Length = 732

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 109 HRPHVIL--VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
             P  ++  +VG +GVGK+T++  L+         V     D  + AA+
Sbjct: 244 DIPGGVMAGLVGPDGVGKSTLLALLAGVRRPQRGGVEALGADLRQPAAL 292


>gi|295110221|emb|CBL24174.1| ABC-type multidrug transport system, ATPase component [Ruminococcus
           obeum A2-162]
          Length = 286

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 104 NWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           N  F+     I+ ++G NG GKTT I  +   +   G  V +   D
Sbjct: 21  NISFTLPKGYIMGLIGPNGSGKTTTIKLILNMLKRTGGTVKVMGLD 66


>gi|262376625|ref|ZP_06069853.1| cell division protein [Acinetobacter lwoffii SH145]
 gi|262308335|gb|EEY89470.1| cell division protein [Acinetobacter lwoffii SH145]
          Length = 629

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 25/168 (14%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  + + +++  L  P  +    +  P  +L+VG  G GKT     L+K ++        
Sbjct: 164 EAKQEVVEIVDFLKDPTKFKRLGASIPRGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 219

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           +   +                  +       S    +  +A + A      +  ID  GR
Sbjct: 220 SISGS---------------DFVEMFVGVGASRVRDMFEQAKRHAPCIIF-IDEIDAVGR 263

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                           + ++L  +D    +  + V+ AT   + L + 
Sbjct: 264 HRGSGTGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRADVLDKA 311


>gi|242067607|ref|XP_002449080.1| hypothetical protein SORBIDRAFT_05g004480 [Sorghum bicolor]
 gi|241934923|gb|EES08068.1| hypothetical protein SORBIDRAFT_05g004480 [Sorghum bicolor]
          Length = 981

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 74  RYAKDVSVQRVLYDVSELIHK----MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           R  ++ + +  +  V E I +    ++  L+K  N     +  V  +VGV G+GKTT+  
Sbjct: 155 RARRETTGEDEVSVVGEKIDEDTIHLVDLLTKEKNVHEHKKVMVYAIVGVGGIGKTTLAK 214

Query: 130 KL 131
           K+
Sbjct: 215 KI 216


>gi|239994998|ref|ZP_04715522.1| Bacterial type II secretion system protein E:GAF domain
           [Alteromonas macleodii ATCC 27126]
          Length = 752

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 95  MLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVI 128
            L P ++    +   +PH IL VVG  G GKTT +
Sbjct: 479 NLAPNNRARLEEMIKKPHGILLVVGPTGSGKTTTL 513


>gi|297559338|ref|YP_003678312.1| LAO/AO transporter ATPase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843786|gb|ADH65806.1| LAO/AO transport system ATPase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 318

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 15/156 (9%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++VE +             ++ + +  + +++  L+       + R  V+   G  GVGK
Sbjct: 5   RLVERVREGDRRALARAITLVENGAAALREIMAGLA-----PHTGRARVVGFTGSPGVGK 59

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIGSD 177
           +T    + +     GL V + A D        A+      ++  A               
Sbjct: 60  STTTNAVVRAARAKGLTVAVLAVDPSSPFTGGALLGDRVRMQEHATDPGVFIRSMANRGH 119

Query: 178 AAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSI 210
              L++    A +   A   DV++++T G       
Sbjct: 120 LGGLSWATPHALRVLDAAGFDVILVETVGVGQAEVE 155


>gi|222142955|pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
           Gdp- Bound
          Length = 181

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           SK F+  F ++   IL+VG++G GKTTV+ KL  
Sbjct: 6   SKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKL 39


>gi|207092232|ref|ZP_03240019.1| cell division protein [Helicobacter pylori HPKX_438_AG0C1]
          Length = 286

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 34/191 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 101 PESMPIEKRENLSKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMSLESATKNELENAFQ 160

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 161 RYD----------------ALGVRFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPK 204

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++            +    A  Q+ + A       +  
Sbjct: 205 GVLLIGPPGVGKTM----IAKALASEARVPFFYESGS----AFSQIYVGAGAKKVHELFM 256

Query: 173 EIGSDAAALAY 183
                A ++ +
Sbjct: 257 HAKKHAPSIIF 267


>gi|195332741|ref|XP_002033052.1| GM21107 [Drosophila sechellia]
 gi|194125022|gb|EDW47065.1| GM21107 [Drosophila sechellia]
          Length = 336

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 13/168 (7%)

Query: 24  TSLKLKEGITDIISSRRLDD--GVREELEDLLIR--SDIGVAVAQKIVEEL--LTKRYAK 77
           T   L E   +++    +       +  E  L    + I +   +++ +EL  L K    
Sbjct: 12  TGKLLSEYQLNLLRKNNICSLIDFYDADEKKLHELWA-INIQSVRELKKELSLLQKGSVH 70

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +         E + K+L  + +PF         V  + G  GVGKT ++  L+     
Sbjct: 71  EGTPDLNYKTGIEELDKLLHSVEQPFKPGR-----VWGLCGQPGVGKTQLLYTLALNFVW 125

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
                 +   DT R  +  +++        D    +       +   A
Sbjct: 126 K-HSQAVLFIDTKREFSCKRIQDMLRARKVDAEVCQRVMKEIRVVQAA 172


>gi|156840781|ref|XP_001643769.1| hypothetical protein Kpol_1019p32 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114393|gb|EDO15911.1| hypothetical protein Kpol_1019p32 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 181

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           SK F+  F ++   IL+VG++G GKTTV+ KL  
Sbjct: 6   SKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKL 39


>gi|172059469|ref|YP_001807121.1| type VI secretion ATPase [Burkholderia ambifaria MC40-6]
 gi|171991986|gb|ACB62905.1| type VI secretion ATPase, ClpV1 family [Burkholderia ambifaria
           MC40-6]
          Length = 889

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 612 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMVTINMSEYQEAHSVSGLK- 669

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 670 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 719

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 720 TMDDAEGREIDFRNTLIILTSNVGSAAVMQA 750


>gi|6320009|ref|NP_010089.1| Arf1p [Saccharomyces cerevisiae S288c]
 gi|114121|sp|P11076|ARF1_YEAST RecName: Full=ADP-ribosylation factor 1
 gi|171073|gb|AAA34431.1| ADP-ribosylation factor [Saccharomyces cerevisiae]
 gi|1004303|emb|CAA58255.1| ADP-ribosylationfactor 2 [Saccharomyces cerevisiae]
 gi|1431314|emb|CAA98769.1| ARF1 [Saccharomyces cerevisiae]
 gi|151941814|gb|EDN60170.1| ADP-ribosylation factor [Saccharomyces cerevisiae YJM789]
 gi|190405186|gb|EDV08453.1| ADP-ribosylation factor [Saccharomyces cerevisiae RM11-1a]
 gi|256270060|gb|EEU05305.1| Arf1p [Saccharomyces cerevisiae JAY291]
 gi|259145052|emb|CAY78316.1| Arf1p [Saccharomyces cerevisiae EC1118]
 gi|285810847|tpg|DAA11671.1| TPA: Arf1p [Saccharomyces cerevisiae S288c]
 gi|323309904|gb|EGA63105.1| Arf1p [Saccharomyces cerevisiae FostersO]
 gi|323334282|gb|EGA75663.1| Arf1p [Saccharomyces cerevisiae AWRI796]
 gi|323338387|gb|EGA79612.1| Arf1p [Saccharomyces cerevisiae Vin13]
 gi|323349393|gb|EGA83617.1| Arf1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355876|gb|EGA87688.1| Arf1p [Saccharomyces cerevisiae VL3]
          Length = 181

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           SK F+  F ++   IL+VG++G GKTTV+ KL  
Sbjct: 6   SKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKL 39


>gi|86152777|ref|ZP_01070982.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|283956989|ref|ZP_06374461.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni 1336]
 gi|85843662|gb|EAQ60872.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|283791490|gb|EFC30287.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni 1336]
          Length = 368

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 104/320 (32%), Gaps = 56/320 (17%)

Query: 14  IRKLTK----GFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVE 68
           + KL      GF    +       + +   ++ DDGV  ++E +   +     VA +I +
Sbjct: 6   LEKLKTVKYPGFEKDIVSF-----NFVKDIKIQDDGVFIDIEIV--SA--NPEVANEIRK 56

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              T+  +        L  ++  I +         N     +  +++  G  GVGK+T  
Sbjct: 57  N-ATEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMVSSGKGGVGKSTTT 115

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+  M+  G +V +   D +               +   +  E  +    +  +  K 
Sbjct: 116 VNLAISMAKMGKRVGILDADIYGP-------------NIPRMLGETKTQP-EVVGQRLKP 161

Query: 189 AQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQV----LDATTGQ 243
                   + + + G L      LM     +++ +++L        L V    +   TG 
Sbjct: 162 ILTHG---VYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD 218

Query: 244 NALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIPIVVTHKIPVY--------FLG- 290
             +   +     AG    + T     +D + R    + +     IP+         FL  
Sbjct: 219 AQITSAQSIPITAGV--CVSTPQTVSLDDSKR---ALDMFNKLHIPIAGVIENMSGFLCP 273

Query: 291 -VGEGINDLEPFVAKDFSAV 309
             G+  +      A+D +  
Sbjct: 274 DNGKEYDIFGKGTAEDMAKA 293


>gi|332247761|ref|XP_003273030.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           [Nomascus leucogenys]
          Length = 455

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +
Sbjct: 35  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY 88


>gi|258621303|ref|ZP_05716337.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM573]
 gi|258586691|gb|EEW11406.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM573]
          Length = 426

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   +KI E L      ++ + + +   V     ++    +
Sbjct: 46  NDIIREEIKDVLPKKESAALPTPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDT 105

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 106 TGDGVELGKSN--ILLIGPTGSGKTLLAETLARFL 138


>gi|207111037|ref|ZP_03245199.1| flagellar biosynthesis regulator FlhF [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 51

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 273 GGLIPIVVTHKIPVYFLGVGEGIN-DLEPFVAKDFSAVIT 311
           G L  +V   + P+ +L VG+ +  DL+    +     + 
Sbjct: 1   GNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVDCML 40


>gi|170749880|ref|YP_001756140.1| arginine/ornithine transport system ATPase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656402|gb|ACB25457.1| LAO/AO transport system ATPase [Methylobacterium radiotolerans JCM
           2831]
          Length = 328

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 28/174 (16%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E L + L+R D            L       +          + LI  +L    +     
Sbjct: 8   ESLRERLLRGD---------RAALARAITLAESKRADHRALAASLIDSVLPETGRAIRVG 58

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAI-----DQLK 159
            +         GV GVGK+T I  L   +++AG KV + A D  + R+         ++ 
Sbjct: 59  IT---------GVPGVGKSTTIDALGSNLTEAGHKVAVLAVDPSSSRTGGSILGDKTRMA 109

Query: 160 IWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             +    A    S        +A    E     +A   DV++++T G   + + 
Sbjct: 110 RLSHDPGAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA 163


>gi|154334723|ref|XP_001563608.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134060630|emb|CAM37642.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 214

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 87  DVSELIHKMLMPLSKP----FNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKM 135
            + E +H +++ + +        +F     V +++ G  G GKTT+  KL+   
Sbjct: 22  ILDEAMHNVVLQMPEDPLAFLEKEFRRPTPVQVILTGPCGSGKTTLAAKLAAHY 75


>gi|145543416|ref|XP_001457394.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425210|emb|CAK89997.1| unnamed protein product [Paramecium tetraurelia]
          Length = 673

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 21/171 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            DV       +  E I + L    K +    +  P  IL+VG  G GKT     L++ ++
Sbjct: 243 NDVLGIDEFKEELEEIVEFLKN-PKKYTDSGAKLPKGILLVGPPGTGKT----LLARALA 297

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                       +      D++ +    +    +       A ++ +          +D 
Sbjct: 298 GEAGCAFFYKSGS----EFDEMFVGVGASRVREIFKTARQKAPSIIF----------IDE 343

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             ID+ G              + ++L  +D       + V+ AT  +  L 
Sbjct: 344 --IDSIGGRRRAQDPGYSRDTINQILTEMDGFKQSESVIVIGATNFEQVLD 392


>gi|116872316|ref|YP_849097.1| ABC transporter ATP-binding protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116741194|emb|CAK20316.1| ABC transporter ATP-binding protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 523

 Score = 37.9 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 33/195 (16%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT---------------- 126
             + ++++L  ++   +         ++   I ++G NG+GKTT                
Sbjct: 1   MSIIEINQLKIEVADRILVEIPHLLVNKKARIGIIGQNGLGKTTLMEVIAGAKEATSGTV 60

Query: 127 -VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
              GKL+     +  K   + G+  R A    ++       AD          + L  E+
Sbjct: 61  ITQGKLAYIKQLSNDKSTKSGGEKTRKAIQQAMRQNPSVLLAD-------EPTSNLDVES 113

Query: 186 FKQAQAKKVDV---LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            K  + +  D    L+I +  R   ++ L   I ++      +     H+ L        
Sbjct: 114 VKHLERQWSDFHGALLIISHDRAFLDA-LCTEIWEIKNQTIHVYKGNYHAYL-----EQK 167

Query: 243 QNALRQVEMFHAVAG 257
           Q    Q E+ +    
Sbjct: 168 QQHENQAELAYKEFK 182


>gi|271964758|ref|YP_003338954.1| hypothetical protein Sros_3272 [Streptosporangium roseum DSM 43021]
 gi|270507933|gb|ACZ86211.1| hypothetical protein Sros_3272 [Streptosporangium roseum DSM 43021]
          Length = 801

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            ++L  L      D    P V+ VV G+ G+GK+T+  + +    D    V     D+
Sbjct: 136 EEILAQLDSAMGGD---EPVVVAVVQGLGGIGKSTLAARYAALHHDRFHPVWWITADS 190


>gi|326318815|ref|YP_004236487.1| general secretory pathway protein E [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375651|gb|ADX47920.1| general secretory pathway protein E [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 578

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 110 RPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---FRSAAIDQLKIWADRT 165
           +PH IL+V G  G GKTT +   +           +   +    ++   I+Q+++     
Sbjct: 324 KPHGILLVTGPTGSGKTTTL--YAALSKIDAESNKIITVEDPVEYQLEGINQIQVHPQIN 381


>gi|262404274|ref|ZP_06080829.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC586]
 gi|262349306|gb|EEY98444.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC586]
          Length = 426

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   +KI E L      ++ + + +   V     ++    +
Sbjct: 46  NDIIREEIKDVLPKKESAALPTPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDT 105

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 106 TGDGVELGKSN--ILLIGPTGSGKTLLAETLARFL 138


>gi|261749252|ref|YP_003256937.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
 gi|261497344|gb|ACX83794.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 855

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 17/127 (13%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDI----------ISSRRLDDGVREELE 50
            SNQK+  E       LTK    T  +L E   +I           S   +D      + 
Sbjct: 71  FSNQKIRKEYHFLFDHLTKSLKLTKDQLFERSKNILYAILDDFSSFSISTIDKFTYRTIR 130

Query: 51  DLLIRSDIGVAV-AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
             L + +I + + A+K + EL+ K          +      L+   L  L +  NWD S 
Sbjct: 131 SFLYKKNINLEMDAKKFLWELVDKLLTHSEKWSHL------LVQFSLEKLKEGKNWDISK 184

Query: 110 RPHVILV 116
               I +
Sbjct: 185 EIFKIAL 191


>gi|258625373|ref|ZP_05720270.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM603]
 gi|262166051|ref|ZP_06033788.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           VM223]
 gi|262171084|ref|ZP_06038762.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           MB-451]
 gi|258582364|gb|EEW07216.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio mimicus
           VM603]
 gi|261892160|gb|EEY38146.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           MB-451]
 gi|262025767|gb|EEY44435.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio mimicus
           VM223]
          Length = 426

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   +KI E L      ++ + + +   V     ++    +
Sbjct: 46  NDIIREEIKDVLPKKESAALPTPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDT 105

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 106 TGDGVELGKSN--ILLIGPTGSGKTLLAETLARFL 138


>gi|221194753|ref|ZP_03567810.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           rimae ATCC 49626]
 gi|221185657|gb|EEE18047.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Atopobium
           rimae ATCC 49626]
          Length = 435

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 15/108 (13%)

Query: 41  LDDGVREELEDL----------LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           ++D    ELE+           LI+    +    +I +EL      ++ + + +   V  
Sbjct: 50  INDSFELELEEAERSDATSDEPLIK---NLPTPHEIYDELSQYVMGQEDAKRAMSVAVYN 106

Query: 91  LIHKMLMPLSKPFN--WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
              ++L    +P     D       IL++G  G GKT +   L++ + 
Sbjct: 107 HYRRILSGNDEPAEGDEDVEIAKSNILLLGPTGTGKTLLAQTLARFLE 154


>gi|206558753|ref|YP_002229513.1| putative type VI secretion system protein TssH [Burkholderia
           cenocepacia J2315]
 gi|198034790|emb|CAR50657.1| putative type VI secretion system protein TssH [Burkholderia
           cenocepacia J2315]
          Length = 889

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 612 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMVTINMSEYQEAHSVSGLK- 669

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 670 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 719

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 720 TMDDAEGREIDFRNTLIILTSNVGSAAVMQA 750


>gi|196010696|ref|XP_002115212.1| hypothetical protein TRIADDRAFT_29297 [Trichoplax adhaerens]
 gi|190581983|gb|EDV22057.1| hypothetical protein TRIADDRAFT_29297 [Trichoplax adhaerens]
          Length = 496

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 104 NWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           N  FS +P  ++ +VG NG GK+T I KL K++ +   K      D+   +  D   + +
Sbjct: 280 NLSFSVKPGEIVALVGANGSGKSTTI-KLCKRLYE--PKSGEILLDSRPLSDYDNQYLHS 336

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
                +    +  +  + L  E          D  +ID A   + + 
Sbjct: 337 KVAMVE----QGPTLFSRLISENISYGYKDCKDRKMIDAAVMANADE 379


>gi|170076519|ref|YP_001733158.1| ParA family partitioning protein [Synechococcus sp. PCC 7002]
 gi|169887381|gb|ACB01089.1| partitioning protein, ParA family [Synechococcus sp. PCC 7002]
          Length = 198

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 18/101 (17%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGK+T    ++  ++    K +L  GD  R+A                  S+ G     
Sbjct: 12  GVGKSTSAIHIAAYLA-RNQKTILIDGDPNRTA---------------LNWSQRGEMPFT 55

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNS--ILMAGIGKMI 219
           +A E          D ++IDT  R +++    L  G   +I
Sbjct: 56  VADERQAMRLITGHDFVVIDTPARPNSDDLQELAKGCDLLI 96


>gi|167626208|ref|YP_001676502.1| cobyrinic acid ac-diamide synthase [Shewanella halifaxensis
           HAW-EB4]
 gi|167356230|gb|ABZ78843.1| Cobyrinic acid ac-diamide synthase [Shewanella halifaxensis
           HAW-EB4]
          Length = 262

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 42/140 (30%), Gaps = 26/140 (18%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  ++    +V+L   D                     + S I      
Sbjct: 13  GVGKTTTCVNLAASLAATKRRVLLIDLD---------------PQGNATMGSGIDKYTVE 57

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
                    +    DV+  DT G+      L+AG G +     +L       V       
Sbjct: 58  NTAYELLVEEKPFEDVVCRDTTGKY----DLIAGNGDVTAAEIKLMEFFAREVRL----- 108

Query: 241 TGQNALRQVEMFHAVAGTTG 260
             +NAL  ++  +       
Sbjct: 109 --RNALAPIKDDYDFIFIDC 126


>gi|157415825|ref|YP_001483081.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386789|gb|ABV53104.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni 81116]
 gi|307748462|gb|ADN91732.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315931649|gb|EFV10610.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 368

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 104/320 (32%), Gaps = 56/320 (17%)

Query: 14  IRKLTK----GFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVE 68
           + KL      GF    +       + +   ++ DDGV  ++E +   +     VA +I +
Sbjct: 6   LEKLKTVKYPGFEKDIVSF-----NFVKDIKIQDDGVFIDIEIV--SA--NPEVANEIRK 56

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
              T+  +        L  ++  I +         N     +  +++  G  GVGK+T  
Sbjct: 57  N-ATEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMVSSGKGGVGKSTTT 115

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+  M+  G +V +   D +               +   +  E  +    +  +  K 
Sbjct: 116 VNLAISMAKMGKRVGILDADIYGP-------------NIPRMLGETKTQP-EVVGQRLKP 161

Query: 189 AQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQV----LDATTGQ 243
                   + + + G L      LM     +++ +++L        L V    +   TG 
Sbjct: 162 ILTHG---VYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD 218

Query: 244 NALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIPIVVTHKIPVY--------FLG- 290
             +   +     AG    + T     +D + R    + +     IP+         FL  
Sbjct: 219 AQITSAQSIPITAGV--CVSTPQTVSLDDSKR---ALDMFNKLHIPIAGVIENMSGFLCP 273

Query: 291 -VGEGINDLEPFVAKDFSAV 309
             G+  +      A+D +  
Sbjct: 274 DNGKEYDIFGKGTAEDMAKA 293


>gi|159899635|ref|YP_001545882.1| ABC transporter-like protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892674|gb|ABX05754.1| ABC transporter related [Herpetosiphon aurantiacus ATCC 23779]
          Length = 326

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSD 137
            ++E + K               +P  V+ ++G NG GKTT I  L+  +  
Sbjct: 2   IIAEELRKQFGDFHAVKGVSLEVKPGEVLALLGPNGAGKTTSIRMLAAILKP 53


>gi|114321857|ref|YP_743540.1| arsenite-activated ATPase ArsA [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228251|gb|ABI58050.1| arsenite efflux ATP-binding protein ArsA [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 571

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 19/152 (12%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRTSADFV 170
           ++ +G  GVGKTT+  +++  ++  G  V L   D      +A   +L         D  
Sbjct: 327 VMTLGKGGVGKTTLAARIAVALASRGHSVHLTTTDPAAHVAAAVGGELPTGLTVGRVDPK 386

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD---P 227
                     +A                +D  GR      L +   + I V +       
Sbjct: 387 AETERYREHVMATAGAD-----------MDEEGRKLLEEDLRSPCTEEIAVFQAFARTVA 435

Query: 228 HAPHSVLQVLDATTGQNA--LRQVEMFHAVAG 257
            A   ++ +  A TG     L   + +H   G
Sbjct: 436 RAEDEIVVLDTAPTGHTILLLDAAQAYHRELG 467


>gi|332295575|ref|YP_004437498.1| ATP-dependent metalloprotease FtsH [Thermodesulfobium narugense DSM
           14796]
 gi|332178678|gb|AEE14367.1| ATP-dependent metalloprotease FtsH [Thermodesulfobium narugense DSM
           14796]
          Length = 627

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 56/180 (31%), Gaps = 24/180 (13%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            TK   KDV+         E I   L   + PF    +  P  +L+VG  G GKT     
Sbjct: 150 KTKTTFKDVAGADEAKQELEEIIDFLKNPA-PFRAMGAKIPRGVLLVGPPGCGKT----L 204

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ ++        +   +                  +       S    L  +A  Q+ 
Sbjct: 205 LARAVAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDLFEQAKNQSP 249

Query: 191 AKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +  ID  GR     +          + ++L  +D       + V+ AT   + L 
Sbjct: 250 CIIF-IDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFEVDETIIVMAATNRPDVLD 308


>gi|315126951|ref|YP_004068954.1| helicase, ATP-dependent [Pseudoalteromonas sp. SM9913]
 gi|315015465|gb|ADT68803.1| helicase, ATP-dependent [Pseudoalteromonas sp. SM9913]
          Length = 1297

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 22/157 (14%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLL--IRSDIGVAVAQKIVEELL 71
             +L           K+ +  +   +++ D  +  L   L  I +DI    +Q + E+ L
Sbjct: 10  FGELKTCLKKDQFSFKKRLHGV---KKITDEAK--LTSALEKITADISR--SQSLREQRL 62

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
                     Q  +    + I + +                V+++ G  G GKTT I K+
Sbjct: 63  AGLPNVTYPEQLPVSQKKDTIKEAIAN------------NQVVIIAGETGSGKTTQIPKM 110

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             ++   G+   +      R AA       A+    +
Sbjct: 111 CLEL-GRGVDGYIGHTQPRRLAARSVANRIAEEMQCE 146


>gi|300311664|ref|YP_003775756.1| siderophore (cyclic peptide) ABC transporter protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074449|gb|ADJ63848.1| ABC-type siderophore (cyclic peptide) export system protein
           [Herbaspirillum seropedicae SmR1]
          Length = 560

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
             P +  F+    V+ +VG NG GKTT+   L+      
Sbjct: 354 MGPIDLAFAPG-EVVFLVGGNGSGKTTLAKLLAGLYRPG 391


>gi|299148389|ref|ZP_07041451.1| LAO/AO transport system ATPase [Bacteroides sp. 3_1_23]
 gi|298513150|gb|EFI37037.1| LAO/AO transport system ATPase [Bacteroides sp. 3_1_23]
          Length = 363

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 40/223 (17%)

Query: 63  AQKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
             + VE ++       ++ V++   +    + + + ++    PF+ +       I V GV
Sbjct: 40  VAEFVEGIVKGDVTILSQAVTLVESVKPEHQAVSQEIIEKCLPFSGNSIR----IGVSGV 95

Query: 120 NGVGKTTVI-----------GKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            G GK+T I           GKL+    D  +        GD  R   ++QL +      
Sbjct: 96  PGAGKSTSIDVFGLHVLEKGGKLAVLAIDPSSERSKGSILGDKTR---MEQLSVHPKSFI 152

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                +      A    E     +A   D + ++T G   + +                 
Sbjct: 153 RPSPSAGSLGGVARKTRETIILCEAAGFDKIFVETVGVGQSETA---------------- 196

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            H+      ++  +   + L+ ++         G+++ K DG 
Sbjct: 197 VHSMVDFFLLIQLSGTGDELQGIKRGIMEMA-DGIVINKADGD 238


>gi|254583756|ref|XP_002497446.1| ZYRO0F05742p [Zygosaccharomyces rouxii]
 gi|238940339|emb|CAR28513.1| ZYRO0F05742p [Zygosaccharomyces rouxii]
          Length = 181

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           SK F+  F ++   IL+VG++G GKTTV+ KL  
Sbjct: 6   SKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKL 39


>gi|256084465|ref|XP_002578449.1| xpa-binding protein 1 (mbdin) [Schistosoma mansoni]
 gi|238663823|emb|CAZ34687.1| xpa-binding protein 1 (mbdin), putative [Schistosoma mansoni]
          Length = 376

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                 D   +P  ++V+G+ G GKTT + KL++ ++ +         D
Sbjct: 1   MNQLEQDLRTKPICLIVLGMAGSGKTTFVKKLNEYLTVSSNSSYTINLD 49


>gi|242019200|ref|XP_002430052.1| Thyroid receptor-interacting protein, putative [Pediculus humanus
           corporis]
 gi|212515122|gb|EEB17314.1| Thyroid receptor-interacting protein, putative [Pediculus humanus
           corporis]
          Length = 422

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           V  + +   +   +  +L   S+  N +  H   V+L+ G  G GKTT+   L++K+S  
Sbjct: 123 VLEEGIKKQLMSYVQTILEYSSRNVNPNIVHWNGVVLLHGPPGTGKTTLCKGLAQKLSIR 182

Query: 139 GLKVMLAA 146
                   
Sbjct: 183 LKSKYKTC 190


>gi|156848055|ref|XP_001646910.1| hypothetical protein Kpol_2000p16 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117592|gb|EDO19052.1| hypothetical protein Kpol_2000p16 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 181

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           SK F+  F ++   IL+VG++G GKTTV+ KL  
Sbjct: 6   SKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKL 39


>gi|70732787|ref|YP_262550.1| sulfate adenylytransferase, large subunit/adenylylsulfate kinase
           [Pseudomonas fluorescens Pf-5]
 gi|68347086|gb|AAY94692.1| sulfate adenylytransferase, large subunit/adenylylsulfate kinase
           [Pseudomonas fluorescens Pf-5]
          Length = 625

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           ++  L     +  + L    +       H+  VI   G++G GK+TV   L K++   G 
Sbjct: 425 IRHDLRRAQNVHRQALSITRENREQLNGHKGKVIWFTGLSGSGKSTVANALEKELHAQGK 484

Query: 141 KVMLAAGDTFRSA 153
           +  +  GD  R  
Sbjct: 485 RTYILDGDNVRQG 497


>gi|152967765|ref|YP_001363549.1| ABC transporter transmembrane protein [Kineococcus radiotolerans
           SRS30216]
 gi|151362282|gb|ABS05285.1| ABC transporter transmembrane region [Kineococcus radiotolerans
           SRS30216]
          Length = 605

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 24/178 (13%)

Query: 104 NWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---------FRSA 153
           +  F+  P   + +VG  G GKTT++  L +       +++L   DT          R+A
Sbjct: 379 DLSFTAEPGQTVAIVGPTGAGKTTLVNLLLRYYEVTSGRILLDGVDTATMSRAELRSRAA 438

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK--------KVDVLIIDTAGRL 205
            + Q       T A+ +     S + A   EA + A               ++ D AGR+
Sbjct: 439 IVLQDTWLFQGTIAENIAYARPSASGAEVLEAARAASVDTVVATLPEGFQTVVDDDAGRI 498

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
                  AG  ++I + +         VL    ++      R V+   A        +
Sbjct: 499 ------SAGEKQLITIARAHLARPRVLVLDEATSSVDTRTERVVQRAMAALRADRTSL 550


>gi|296159940|ref|ZP_06842761.1| type VI secretion ATPase, ClpV1 family [Burkholderia sp. Ch1-1]
 gi|295889923|gb|EFG69720.1| type VI secretion ATPase, ClpV1 family [Burkholderia sp. Ch1-1]
          Length = 892

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 615 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKMVTINMSEYQEAHSVSGLK- 672

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 673 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 722

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 723 TMDDAEGREIDFRNTLIILTSNVGSQAVMQA 753


>gi|291456970|ref|ZP_06596360.1| efflux ABC transporter, permease/ATP-binding protein
           [Bifidobacterium breve DSM 20213]
 gi|291381381|gb|EFE88899.1| efflux ABC transporter, permease/ATP-binding protein
           [Bifidobacterium breve DSM 20213]
          Length = 604

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 57/181 (31%), Gaps = 17/181 (9%)

Query: 98  PLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---R 151
              KP   DFS        + +VG  G GKTT++  L +    AG  + +   DT    R
Sbjct: 375 EAGKPIINDFSASVSSGQKVAIVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPR 434

Query: 152 SAAIDQLKIWAD--RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII-------DTA 202
               DQ  +         D V   I      +  E    A         I       DT 
Sbjct: 435 WNVHDQFSMVLQDTWIFNDTVRENIAYSKPGVTDEQIISACKAVGLHHYIMSLPNGYDTV 494

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
             L  NS L AG  +++ + + +   AP  +L    ++        ++            
Sbjct: 495 --LDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTS 552

Query: 263 M 263
            
Sbjct: 553 F 553


>gi|255655747|ref|ZP_05401156.1| putative ATP-binding protein [Clostridium difficile QCD-23m63]
 gi|296451021|ref|ZP_06892766.1| nucleotide-binding protein [Clostridium difficile NAP08]
 gi|296879014|ref|ZP_06903011.1| nucleotide-binding protein [Clostridium difficile NAP07]
 gi|296260152|gb|EFH07002.1| nucleotide-binding protein [Clostridium difficile NAP08]
 gi|296429967|gb|EFH15817.1| nucleotide-binding protein [Clostridium difficile NAP07]
          Length = 270

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++ G  GVGK+TV   L+ K++  G KV +   D
Sbjct: 35  VMSGKGGVGKSTVTALLANKLNKMGYKVGILDSD 68


>gi|218296342|ref|ZP_03497085.1| protein of unknown function DUF59 [Thermus aquaticus Y51MC23]
 gi|218243136|gb|EED09667.1| protein of unknown function DUF59 [Thermus aquaticus Y51MC23]
          Length = 350

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + E+  +    +  P  +      HV+ V  G  GVGK+TV   L+  +S  G +V L  
Sbjct: 70  LEEVRVRFGGGVRPPEQYPIPGVKHVVAVASGKGGVGKSTVAANLALALSREGARVGLLD 129

Query: 147 GDTFRSAAIDQLKIWADRTSAD 168
            D +  +      +  +R   D
Sbjct: 130 ADLYGPSQAKMFGLEGERLKVD 151


>gi|145496459|ref|XP_001434220.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401344|emb|CAK66823.1| unnamed protein product [Paramecium tetraurelia]
          Length = 445

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 65/185 (35%), Gaps = 38/185 (20%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           ++  +D+    +L      ++  L  L++  N    +RP  IL  G  G GKTT      
Sbjct: 199 EKQKRDIEDTVLLALQYPEVYDSLTALTRVKNEP--NRPKAILFEGPPGTGKTTTA---- 252

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
                             R  A  Q++I       +   S+   ++     + +K  Q  
Sbjct: 253 ------------------RIIA-QQVQIPLVYLPIESFMSKWYGESERQFADIWKGCQQL 293

Query: 193 KVDVLIIDTAGRLHNNSILMAGIGKMIRV--------LKRLDPHAPHSVLQVLDATTGQN 244
              ++ ID       ++I     G+M  V        L+++D    ++ + ++ AT  + 
Sbjct: 294 GRAIIFID-----EIDAIAQQRGGEMHEVSRRILSTLLRKIDSFESNTNVLLICATNRKQ 348

Query: 245 ALRQV 249
            L   
Sbjct: 349 DLDAA 353


>gi|126699337|ref|YP_001088234.1| putative ATP-binding protein [Clostridium difficile 630]
 gi|254975367|ref|ZP_05271839.1| putative ATP-binding protein [Clostridium difficile QCD-66c26]
 gi|255100864|ref|ZP_05329841.1| putative ATP-binding protein [Clostridium difficile QCD-63q42]
 gi|255306752|ref|ZP_05350923.1| putative ATP-binding protein [Clostridium difficile ATCC 43255]
 gi|255314496|ref|ZP_05356079.1| putative ATP-binding protein [Clostridium difficile QCD-76w55]
 gi|255517173|ref|ZP_05384849.1| putative ATP-binding protein [Clostridium difficile QCD-97b34]
 gi|255650277|ref|ZP_05397179.1| putative ATP-binding protein [Clostridium difficile QCD-37x79]
 gi|260683393|ref|YP_003214678.1| putative ATP-binding protein [Clostridium difficile CD196]
 gi|260686989|ref|YP_003218122.1| putative ATP-binding protein [Clostridium difficile R20291]
 gi|306520252|ref|ZP_07406599.1| putative ATP-binding protein [Clostridium difficile QCD-32g58]
 gi|115250774|emb|CAJ68598.1| putative ATP-binding protein [Clostridium difficile]
 gi|260209556|emb|CBA63166.1| putative ATP-binding protein [Clostridium difficile CD196]
 gi|260213005|emb|CBE04328.1| putative ATP-binding protein [Clostridium difficile R20291]
          Length = 270

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++ G  GVGK+TV   L+ K++  G KV +   D
Sbjct: 35  VMSGKGGVGKSTVTALLANKLNKMGYKVGILDSD 68


>gi|67972098|dbj|BAE02391.1| unnamed protein product [Macaca fascicularis]
          Length = 438

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +
Sbjct: 2   TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY 55


>gi|58038379|ref|YP_190348.1| nucleotide binding protein PilQ [Gluconobacter oxydans 621H]
 gi|58000793|gb|AAW59692.1| Nucleotide binding protein PilQ [Gluconobacter oxydans 621H]
          Length = 561

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
             +  +    V+L+ G  G GKTT I +L+K 
Sbjct: 253 LKYIATQPSGVLLLTGPTGSGKTTTIYELAKW 284


>gi|170731804|ref|YP_001763751.1| type VI secretion ATPase [Burkholderia cenocepacia MC0-3]
 gi|254246490|ref|ZP_04939811.1| ATPase with chaperone activity, ATP-binding subunit [Burkholderia
           cenocepacia PC184]
 gi|124871266|gb|EAY62982.1| ATPase with chaperone activity, ATP-binding subunit [Burkholderia
           cenocepacia PC184]
 gi|169815046|gb|ACA89629.1| type VI secretion ATPase, ClpV1 family [Burkholderia cenocepacia
           MC0-3]
          Length = 889

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 612 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMVTINMSEYQEAHSVSGLK- 669

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 670 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 719

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 720 TMDDAEGREIDFRNTLIILTSNVGSAAVMQA 750


>gi|116688497|ref|YP_834120.1| ATPase [Burkholderia cenocepacia HI2424]
 gi|116646586|gb|ABK07227.1| ATPase AAA-2 domain protein [Burkholderia cenocepacia HI2424]
          Length = 889

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 612 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMVTINMSEYQEAHSVSGLK- 669

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 670 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 719

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 720 TMDDAEGREIDFRNTLIILTSNVGSAAVMQA 750


>gi|323127086|gb|ADX24383.1| ABC transporter, ATP-binding/permease protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 590

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 11/103 (10%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
            E +  +L  +D  + V  ++ E+L  +     V                  PL K F  
Sbjct: 321 LERIFAVLDEADDAMLVTNQLDEDLTGQVSFNHVDFSYQSD----------KPLIKEFTL 370

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           D +    +I +VG  G GKTT+I  L +        + +   D
Sbjct: 371 DVNPG-EMIAIVGPTGAGKTTLINLLMRFYDVNKGSITVDGHD 412


>gi|300728278|ref|ZP_07061646.1| putative capsular polysaccharide transport protein [Prevotella
           bryantii B14]
 gi|299774513|gb|EFI71137.1| putative capsular polysaccharide transport protein [Prevotella
           bryantii B14]
          Length = 830

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 56/199 (28%), Gaps = 4/199 (2%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN-GVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           + L+ ++   +     +       VI+      G GKT     L+   +    KV++   
Sbjct: 578 NNLMEEIFRSMRTNLQFMMKKEDKVIMFTSTTSGEGKTFTAANLAISFALLEKKVIMLGL 637

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D  +    +  +I         +     ++  A+  +         +D+L+         
Sbjct: 638 DIRKPRLAELFEIDDHEHGITNILVRDEAEWDAIEKQILSSQINNNLDLLMAGPTPPNPT 697

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHS---VLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
             +    +  +I  LK    +       V  V D                   T      
Sbjct: 698 ELLARESLDAIINTLKEHYDYIIIDTAPVGLVTDTLQISRVCNTTVYMCRAEYTPKSSFN 757

Query: 265 KMDGTARGGGLIPIVVTHK 283
            ++  AR G L  + +   
Sbjct: 758 MINSLARTGKLPNVSIVIN 776


>gi|256828736|ref|YP_003157464.1| Cobyrinic acid ac-diamide synthase [Desulfomicrobium baculatum DSM
           4028]
 gi|256577912|gb|ACU89048.1| Cobyrinic acid ac-diamide synthase [Desulfomicrobium baculatum DSM
           4028]
          Length = 258

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           I   G  GVGKTT+   L   ++  G  V+L   DT
Sbjct: 3   IAFAGKGGVGKTTLCAWLGDYLARQGHDVLLVDADT 38


>gi|224108772|ref|XP_002314963.1| predicted protein [Populus trichocarpa]
 gi|222864003|gb|EEF01134.1| predicted protein [Populus trichocarpa]
          Length = 399

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 28/145 (19%)

Query: 87  DVSELIHKMLMPL------SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           +  + +   +  L      S      F  +P +I+VVG+ G GKTT + +L      + +
Sbjct: 31  EEKDELTDSMNKLNVEASSSGQAGHSFRRKPVIIIVVGMAGSGKTTFLHRLVCHTQASRI 90

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA--------------- 185
           +  +   D     A+  L   A+    D V  +       L                   
Sbjct: 91  RGYVLNLD----PAVMTLPYGANIDIRDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDE 146

Query: 186 ---FKQAQAKKVDVLIIDTAGRLHN 207
                + +A ++D +++DT G++  
Sbjct: 147 VIQVIENRADQLDYVLVDTPGQIEI 171


>gi|114572262|ref|XP_001165887.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           isoform 4 [Pan troglodytes]
 gi|114572264|ref|XP_001165922.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           isoform 5 [Pan troglodytes]
 gi|114572266|ref|XP_001165957.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           isoform 6 [Pan troglodytes]
          Length = 467

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +
Sbjct: 35  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY 88


>gi|77020248|ref|NP_536725.2| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 isoform c
           [Rattus norvegicus]
 gi|436189|gb|AAA41132.1| fructose-6-phosphate,2-kinase:fructose-2, 6-bisphosphatase [Rattus
           norvegicus]
 gi|544902|gb|AAB29678.1| fructose 6-phosphate,2-kinase:fructose 2,6-bisphosphatase [Rattus
           sp.]
 gi|149058696|gb|EDM09853.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2, isoform
           CRA_d [Rattus norvegicus]
          Length = 474

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +
Sbjct: 38  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY 91


>gi|327278629|ref|XP_003224063.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           2-like [Anolis carolinensis]
          Length = 971

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +
Sbjct: 40  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVRSYKSY 93


>gi|320101138|ref|YP_004176730.1| ABC transporter-like protein [Desulfurococcus mucosus DSM 2162]
 gi|319753490|gb|ADV65248.1| ABC transporter related protein [Desulfurococcus mucosus DSM 2162]
          Length = 240

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 2/103 (1%)

Query: 98  PLSKPF--NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           P  KP   N  F+  P + ++VG NG GK+T++  ++  +     KV +   +  R    
Sbjct: 14  PGGKPLVENIGFTLEPGLHVLVGANGSGKSTLLKTMAGILKPLKGKVEINGVNIHRVPRR 73

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           D  ++        F      S    +A+ +      +  +++ 
Sbjct: 74  DAARLVGYVWQNPFHGFIEASVEREIAFISKTTGARQHGEIVY 116


>gi|309806616|ref|ZP_07700612.1| chaperone protein ClpB [Lactobacillus iners LactinV 03V1-b]
 gi|308166921|gb|EFO69104.1| chaperone protein ClpB [Lactobacillus iners LactinV 03V1-b]
          Length = 713

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 72/181 (39%), Gaps = 28/181 (15%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLS 100
            E+L+D  +  D    +++KI+E+++ ++    V       Q  L ++++ + K ++   
Sbjct: 370 YEKLKDQKVDPDKTPVISEKIMEKIIEEKTNIPVGDLQKQEQMQLKNLADDLKKHIIGQD 429

Query: 101 KPFN------------WDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           K  +            ++ S RP    L VG  GVGKT +  +L+K     G +  +   
Sbjct: 430 KAVDVISKAIRRNRVGFNKSGRPIGSFLFVGPTGVGKTELAKQLAK--QMFGTEKSMIRF 487

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D          +     + +  + S  G      A +  ++ +     +++ D   + H 
Sbjct: 488 DMS--------EYMEQYSVSKLIGSAPGYVGYEEAGQLTEKVRHNPYSLILFDEIEKAHP 539

Query: 208 N 208
           +
Sbjct: 540 D 540


>gi|294339444|emb|CAZ87803.1| putative ABC-type Fe(3+) transport system, ATPase component
           [Thiomonas sp. 3As]
          Length = 299

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 3/143 (2%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR--SAAIDQLKIWADRTSADFVCSE 173
           ++G NG GKTT+I  L+         V +A  D  R  +AA   L +       D   + 
Sbjct: 38  LLGPNGAGKTTLISMLAGLTRPTSGHVRVAGFDVQRDAAAARRLLGVVPQELVFDPFFTV 97

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                    Y  F+Q     +D L+ +       +  + A  G M R +           
Sbjct: 98  RQVLRIQSGYFGFRQ-NDPWIDELLHNLGLTAQADKNMRALSGGMKRRVMVAQALVHRPQ 156

Query: 234 LQVLDATTGQNALRQVEMFHAVA 256
           + VLD  T    +   +      
Sbjct: 157 VIVLDEPTAGVDVELRQSLWEFI 179


>gi|288926197|ref|ZP_06420124.1| conjugative transposon protein TraA [Prevotella buccae D17]
 gi|315608827|ref|ZP_07883803.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|288337089|gb|EFC75448.1| conjugative transposon protein TraA [Prevotella buccae D17]
 gi|315249521|gb|EFU29534.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 222

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 4/91 (4%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR---SAAIDQLKIWADRTSADFVCSEIGSD 177
           GVGKTT+    +  ++     V +   D  +   +   D LK   +     +V       
Sbjct: 15  GVGKTTLCMLFANYLASKNKPVCVIDTDLQKTIFTQREDDLKENGEEVEIPYVVQAFSLK 74

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                 +  +  +       + D  G ++ +
Sbjct: 75  DPENVRQLMESVEETPG-YFLFDAPGNINED 104


>gi|281362966|ref|NP_610466.2| Rad51C [Drosophila melanogaster]
 gi|272432403|gb|AAF58973.2| Rad51C [Drosophila melanogaster]
          Length = 336

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 13/168 (7%)

Query: 24  TSLKLKEGITDIISSRRLDD--GVREELEDLLIR--SDIGVAVAQKIVEEL--LTKRYAK 77
           T   L E   +++    +       +  E  L    + I +   +++ +EL  L K    
Sbjct: 12  TGRLLSEYQLNLLRKNNICSLIDFYDADEKKLHELWA-INIQSVRELKKELSLLPKGSVD 70

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +         E + K+L  + +PF         V  + G  GVGKT ++  L+     
Sbjct: 71  EGTPDFNYDTGIEELDKLLDSVEQPFKPGR-----VWELCGQPGVGKTQLLYTLALNFVW 125

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
                 +   DT R  +  +++        D   SE       +   A
Sbjct: 126 K-HSQAVLFIDTKREFSCKRIQDMLRAREVDEEASERAMKGIRVVQAA 172


>gi|255561492|ref|XP_002521756.1| uridylate kinase plant, putative [Ricinus communis]
 gi|223538969|gb|EEF40566.1| uridylate kinase plant, putative [Ricinus communis]
          Length = 301

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 12/140 (8%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             +IV E + K    + +   +     E   K +       N      P V+ V+G  G 
Sbjct: 48  TNEIVSEKVEKEPVFEETTNEIASVGVE--KKTVSEEMTNENLPVKRNPRVVFVLGGPGG 105

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-TSADFVCSEIGSDAAAL 181
           GK+T    L+K++        L++GD  R A    +K+ A+  T  + +  E  S  + +
Sbjct: 106 GKSTQCANLAKQIGY----THLSSGDLLRKA----MKLDAENGTMIESIIKEGKSVPSDV 157

Query: 182 AYEAFKQA-QAKKVDVLIID 200
                ++A      D  ++D
Sbjct: 158 TMRILQKAIDESGNDKFLLD 177


>gi|217966112|ref|YP_002351790.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Listeria monocytogenes HCC23]
 gi|217335382|gb|ACK41176.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Listeria monocytogenes HCC23]
 gi|307572278|emb|CAR85457.1| chaperone family protein [Listeria monocytogenes L99]
          Length = 394

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 26/148 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           +++   +++S+I  + K        + E    +   R + D   EE++           +
Sbjct: 89  DEEDFKDNMSYIFTIEKYLPKKGNAIVE--KTVKRKRLITDLSNEEIK----------KL 136

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             KI E L        +   R   D+ EL  +      K FN    ++   I ++G +GV
Sbjct: 137 TTKISESL--------IGHDRFKEDLLELFLEF-----KMFNAIKENKVFSIFIMGDSGV 183

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           GK T + KL  K      +V       +
Sbjct: 184 GK-TEVAKLLHKYLMGNKQVAKINFGNY 210


>gi|209863953|gb|ACI88894.1| LanG [Listonella anguillarum M3]
          Length = 869

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 13/118 (11%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E +H+ L  L+   +     RP    L+VG +GVGKT  + +L++++      +      
Sbjct: 589 ERVHRNL--LTARADLRRPGRPKGSFLLVGPSGVGKTETVAQLAQQLYGGKQFLNTINMS 646

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
            ++       +              +G     +  EA ++       V+++D   + H
Sbjct: 647 EYQ-------EKHTVSRVIGSPPGYVGYGEGGILTEAIRKMP---YSVVLLDEVEKAH 694


>gi|167945747|ref|ZP_02532821.1| probable partition-related protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 112

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 13/98 (13%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            ++L+    G GK+T+   L+   +D GLKV LA  D  R +++D L+   D T    + 
Sbjct: 12  KIMLMNAKGGCGKSTLATNLASWYADEGLKVALADFDPQR-SSLDWLEARQDYTGIPEIE 70

Query: 172 SEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAGRLHN 207
                     A +A K A   A+  D+L++D    +H 
Sbjct: 71  ----------AIDATKAAPKPARGTDLLVMDAPAGVHR 98


>gi|114572270|ref|XP_001165816.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           isoform 2 [Pan troglodytes]
          Length = 432

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +
Sbjct: 35  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY 88


>gi|56476319|ref|YP_157908.1| general secretion pathway protein E (Type II traffic warden ATPase)
           [Aromatoleum aromaticum EbN1]
 gi|56312362|emb|CAI07007.1| general secretion pathway protein E (Type II traffic warden ATPase)
           [Aromatoleum aromaticum EbN1]
          Length = 570

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 106 DFSHRPHVILVV-GVNGVGKTTVI-GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
           D   RPH IL+V G  G GKTT +   L+K  +     + +     ++ A ++Q+++ + 
Sbjct: 311 DLLLRPHGILLVTGPTGSGKTTTLYAALAKLDATELKILTVEDPVEYQLAGVNQVQVQSQ 370


>gi|317419622|emb|CBN81659.1| 'Twinkle protein, mitochondrial ' [Dicentrarchus labrax]
          Length = 721

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 61/205 (29%), Gaps = 33/205 (16%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +++ E++  +    D           EL   +                   +  G  G G
Sbjct: 403 KQLREDVYGELVNTDQVAGVKWKRFQELTRILKGHRKGELT----------VFTGPTGSG 452

Query: 124 KTTVIGKLSKKMSDAGLKVML--AAGDTFRSAAI--------------DQLKIWA---DR 164
           KTT+I +++  +   G+  +      +  R A I              +Q   WA   + 
Sbjct: 453 KTTLISEVALDLCMQGVNTLWGSFEINNVRLAKIMLTQFAMQRLEENLEQYDFWADKFEE 512

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID----TAGRLHNNSILMAGIGKMIR 220
               F+      +   +            ++ +IID      G+ H      A    +I 
Sbjct: 513 LPLYFMTFHGQQNLKTVLDTMQHAVYLYDINHVIIDNLQFMMGQEHLTVDKFAVQDHIIG 572

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNA 245
             ++   ++   V  ++     ++ 
Sbjct: 573 AFRKFATNSSCHVTLIIHPRKEEDD 597


>gi|226193992|ref|ZP_03789593.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|225933937|gb|EEH29923.1| putative Clp-type ATP-dependent chaperone protein [Burkholderia
           pseudomallei Pakistan 9]
          Length = 882

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ E L  +   +       +  ++E I      L  P       +PH V L+ G +G
Sbjct: 572 VLKLAETLAERVVGQ----PHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 621

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L++ +       +      F+ A           T +    +  G     
Sbjct: 622 VGKTETALA-LAEMLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 670

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +  + +   V+++D   + H +             +   +       ++V+ + 
Sbjct: 671 QGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLT 730

Query: 238 DATTGQNALR 247
                +  ++
Sbjct: 731 SNVGSERVMQ 740


>gi|255537137|ref|XP_002509635.1| leucine-rich repeat containing protein, putative [Ricinus communis]
 gi|223549534|gb|EEF51022.1| leucine-rich repeat containing protein, putative [Ricinus communis]
          Length = 1034

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN---W 105
           +E  L+       + + I+E+L    Y  D+     +      I  +L   ++  N    
Sbjct: 161 MESQLVE-----NIVRDILEKLKQ-AYPCDLEGLVGIKSRIGEIKALLFAENQKSNSIRA 214

Query: 106 DFSHRPHVILVVG---VNGVGKTTVIGK 130
             S +P  + V+G   + G+GKTT + K
Sbjct: 215 SISTKPLDVRVLGIWGMGGIGKTT-LAK 241


>gi|212224231|ref|YP_002307467.1| GTPase [Thermococcus onnurineus NA1]
 gi|212009188|gb|ACJ16570.1| Hypothetical XPA-binding protein 1 [Thermococcus onnurineus NA1]
          Length = 247

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           ++  VG  G GKTT+ G+  + + + G  V     DT
Sbjct: 2   ILAFVGTAGSGKTTLTGEFGRYLKENGHNVAYVNLDT 38


>gi|218437816|ref|YP_002376145.1| cobyrinic acid ac-diamide synthase [Cyanothece sp. PCC 7424]
 gi|218170544|gb|ACK69277.1| Cobyrinic acid ac-diamide synthase [Cyanothece sp. PCC 7424]
          Length = 196

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 50/166 (30%), Gaps = 36/166 (21%)

Query: 113 VILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           +I V  +  GVGKTT    ++  +       +L   D  RSA                  
Sbjct: 2   IIAVTALKGGVGKTTTAIHIAAYLQ-QKAPTLLIDADKNRSA---------------LHW 45

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           S   +    +A +A       K   +I DT  R          +  +++           
Sbjct: 46  SREDTLPFFVASQAGSTRLITKYTHIITDTQARPE-----PEELEDLVQGCD-------- 92

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGT----TGLIMTKMDGTARGG 273
             L V+  T     +        +         +++TK+D   R G
Sbjct: 93  --LLVIPTTPNHLDVDVTIKAVELLQPLKANFKILLTKVDARTRNG 136


>gi|170698913|ref|ZP_02889973.1| type VI secretion ATPase, ClpV1 family [Burkholderia ambifaria
           IOP40-10]
 gi|170136166|gb|EDT04434.1| type VI secretion ATPase, ClpV1 family [Burkholderia ambifaria
           IOP40-10]
          Length = 889

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 612 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMVTINMSEYQEAHSVSGLK- 669

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 670 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 719

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 720 TMDDAEGREIDFRNTLIILTSNVGSAAVMQA 750


>gi|115452429|ref|NP_001049815.1| Os03g0294200 [Oryza sativa Japonica Group]
 gi|108707624|gb|ABF95419.1| 6-phosphofructo-2-kinase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113548286|dbj|BAF11729.1| Os03g0294200 [Oryza sativa Japonica Group]
          Length = 653

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA--AIDQLKIWADRTSADFVC 171
           I++VG+   GKT    KL++ +   G +        +R     I+Q   +    + + V 
Sbjct: 246 IVLVGLPARGKTFTAAKLTRYLRWLGHETKHFNVGKYRRLKHGINQTADFFRGDNKEGV- 304

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            E  ++ AALA E       +   V I D      N   ++  + +  
Sbjct: 305 -EARNEVAALAMEDMLSWMQEGGQVGIFDATNSTRNRRNMLMKMAEGK 351


>gi|86160331|ref|YP_467116.1| daunorubicin resistance ABC transporter ATP-binding subunit
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776842|gb|ABC83679.1| daunorubicin resistance ABC transporter ATP-binding subunit
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 327

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-SAAI 155
            R  V  ++G NG GKTT I  L+  +   G + M+   D  R  AA+
Sbjct: 28  RRGSVYGLLGPNGAGKTTTIRILATLLRPTGGRAMVLGHDVGREPAAV 75


>gi|89092932|ref|ZP_01165884.1| ATPase, AAA family protein [Oceanospirillum sp. MED92]
 gi|89082957|gb|EAR62177.1| ATPase, AAA family protein [Oceanospirillum sp. MED92]
          Length = 452

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 66/189 (34%), Gaps = 25/189 (13%)

Query: 96  LMPLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RS 152
           L+   KP          H ++  G  GVGKTT+   ++  +    L +          R 
Sbjct: 31  LLGRDKPLRTALEQGSAHSMIFWGPPGVGKTTLAKLIAHHVDAHFLTLSAVLSGVKDIRV 90

Query: 153 AAIDQLKIWADRTSADFV-CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH---NN 208
            A++Q K  + +T    +   +          +AF         + +  T        NN
Sbjct: 91  -AVEQAKQHSAQTGRKTILFVDEVHRFNKSQQDAFLPYIEDGTIIFVGATTENPSFELNN 149

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH--AVAGTTGLIMTKM 266
           ++L      ++R L+  D      +L VL+      AL   E  +       +  ++ ++
Sbjct: 150 ALLSRARVYLLRSLEATD------ILNVLN-----RALDDQERGYGQRKLNISDEMLNRL 198

Query: 267 ----DGTAR 271
               DG AR
Sbjct: 199 AQAADGDAR 207


>gi|330803056|ref|XP_003289526.1| hypothetical protein DICPUDRAFT_35934 [Dictyostelium purpureum]
 gi|325080386|gb|EGC33944.1| hypothetical protein DICPUDRAFT_35934 [Dictyostelium purpureum]
          Length = 216

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           S PFN  F ++   IL++G++G GKTT++ KL
Sbjct: 6   SNPFNSIFKNKSIKILMLGLDGAGKTTILYKL 37


>gi|311258257|ref|XP_003127529.1| PREDICTED: LOW QUALITY PROTEIN: NACHT, LRR and PYD
           domains-containing protein 4-like [Sus scrofa]
          Length = 1115

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 21/87 (24%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYD---------VSELIHKMLMPLSKPFNWDFSHRP---- 111
            + E++  +R     + Q  + +             IH+ L   +     +   R     
Sbjct: 82  DLCEKIKARRKRHAKTYQAHIKEKFSNLWFQEARTRIHEYLDQENARKEQESLQRLFAPK 141

Query: 112 -------HVILVVGVNGVGKTTVIGKL 131
                   VIL+ G  GVGKTT + KL
Sbjct: 142 RTGKWTRTVILL-GPQGVGKTTYLVKL 167


>gi|307330615|ref|ZP_07609755.1| carbohydrate kinase, thermoresistant glucokinase family
           [Streptomyces violaceusniger Tu 4113]
 gi|306883771|gb|EFN14817.1| carbohydrate kinase, thermoresistant glucokinase family
           [Streptomyces violaceusniger Tu 4113]
          Length = 170

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           H P V++V+GV+G GKTTV   L+       L V  A  D F   A         + SA 
Sbjct: 2   HAPQVVVVMGVSGTGKTTVGPLLA-----EELGVPYAEADDFHPPA------NIAKMSAG 50

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
               +        A  A+    A    V+      R + +
Sbjct: 51  TPLDDDDRRPWLDAIGAWAHDHAAGGGVVSCSALKRTYRD 90


>gi|238755150|ref|ZP_04616496.1| Cell division protease ftsH [Yersinia ruckeri ATCC 29473]
 gi|238706597|gb|EEP98968.1| Cell division protease ftsH [Yersinia ruckeri ATCC 29473]
          Length = 644

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|256424173|ref|YP_003124826.1| ABC transporter [Chitinophaga pinensis DSM 2588]
 gi|256039081|gb|ACU62625.1| ABC transporter related [Chitinophaga pinensis DSM 2588]
          Length = 549

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 93  HKMLMPLSKPFNWDFSH----RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           ++ +   S  F  +       +  +I +VG NG GKTT I  L+      G KV +
Sbjct: 337 YRYMAEDSSSFTLELEDFTVSKGEIIFIVGGNGCGKTTFINLLTALCRAQGGKVFI 392


>gi|222099426|ref|YP_002533994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           neapolitana DSM 4359]
 gi|254766063|sp|B9K6P5|MURD_THENN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221571816|gb|ACM22628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           neapolitana DSM 4359]
          Length = 432

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 48/184 (26%)

Query: 20  GFASTSLKL-----KEGITDII--SSRRLDDGVREELE------------DLLIRSDIGV 60
           GF  ++  L     + G  +I     +RLDD  +  L             + L+  D+  
Sbjct: 7   GFGKSNRALLDYLLENGEAEIFVSEEKRLDDDTKSYLRKCGVDFEEEGNTEKLLDCDV-- 64

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-----PFNWDFSHRPHVIL 115
                             V V   +   S+++ K+L           F  D + +  VI 
Sbjct: 65  ------------------VYVSPGVKPRSDIVKKLLAGGVNISTELQFFLDRADKEKVIG 106

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           + G NG  K+T    +   +S  GLKV L  G  F + A++ L+   D    +    ++ 
Sbjct: 107 ITGTNG--KSTSAALMHHALSHRGLKVFL--GGNFGTPAVEALREDYDYYVLEVSSFQLF 162

Query: 176 SDAA 179
               
Sbjct: 163 WCER 166


>gi|254465306|ref|ZP_05078717.1| succinoglycan biosynthesis transport protein ExoP, putative
           [Rhodobacterales bacterium Y4I]
 gi|206686214|gb|EDZ46696.1| succinoglycan biosynthesis transport protein ExoP, putative
           [Rhodobacterales bacterium Y4I]
          Length = 714

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 74/243 (30%), Gaps = 42/243 (17%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG-VNGVGKTTVIGKL 131
           +R   +  V++     +E +  +   L      +  H P V+++   + G GKTT    L
Sbjct: 485 RRKVLEYLVEKPSSATAEAVRNLRTSLM---LSNVDHPPQVVVLTSSLPGEGKTTNSLAL 541

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           ++     G KV+L  GD  R     QL     +     +  +I       A +A  Q   
Sbjct: 542 AQNFVGIGKKVLLVEGDIRRRTMTAQLSNVPPQGIVSVLAGDIP------AEQAIFQDPL 595

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
              D+L  +       +          +  +++           V+  +  +   R    
Sbjct: 596 LGCDILAGEKTSANAADLFASERFRVFLEEMRQRYDVILIDTPPVVVVSDARLIARNA-- 653

Query: 252 FHAVAGTTGLIMT-KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
                    +++T K D TA                        +  L  F   +    +
Sbjct: 654 -------DAVLLTVKWDDTAEQDV--------------------VEALRLFHTDN--QRL 684

Query: 311 TGC 313
           TG 
Sbjct: 685 TGM 687


>gi|171316575|ref|ZP_02905791.1| type VI secretion ATPase, ClpV1 family [Burkholderia ambifaria
           MEX-5]
 gi|171098303|gb|EDT43109.1| type VI secretion ATPase, ClpV1 family [Burkholderia ambifaria
           MEX-5]
          Length = 889

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 612 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMVTINMSEYQEAHSVSGLK- 669

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 670 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 719

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 720 TMDDAEGREIDFRNTLIILTSNVGSAAVMQA 750


>gi|126733653|ref|ZP_01749400.1| iron ABC transporter, ATP-binding protein, putative [Roseobacter
           sp. CCS2]
 gi|126716519|gb|EBA13383.1| iron ABC transporter, ATP-binding protein, putative [Roseobacter
           sp. CCS2]
          Length = 260

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 34/119 (28%), Gaps = 20/119 (16%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            + HV+ VVG NG GK+T    L                                    D
Sbjct: 31  QKGHVLGVVGPNGAGKST---LLRLLYRFQVPTTG-----------------HVKINGTD 70

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                    A  +A    +QA A  + V  I   GR        +   + + V+K +  
Sbjct: 71  IWKIPPRKVAQHVAAVLQEQAAAFGLSVREIIALGRTPYRRTYGSADMRDLDVIKNVMA 129


>gi|148553516|ref|YP_001261098.1| ATP-dependent protease ATP-binding subunit ClpX [Sphingomonas
           wittichii RW1]
 gi|166215208|sp|A5V3U4|CLPX_SPHWW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148498706|gb|ABQ66960.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas
           wittichii RW1]
          Length = 424

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 42  DDGVREELEDLLI-RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE +  L+ + D GV    +I E L      +    +RVL       +K L   +
Sbjct: 45  NDIIREETKGALVSKKDGGVPTPHEICEHLDQYVIGQ-AKAKRVLSVAVHNHYKRLNHGA 103

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           K  + + +     IL+VG  G GKT +   +++ +
Sbjct: 104 KGADVELAKSN--ILLVGPTGSGKTLLAQTMARLL 136


>gi|115665235|ref|XP_783104.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115939132|ref|XP_001195782.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 888

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 7/130 (5%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDII--SSRRLDDGVREELEDLLIRSDIG 59
           ++++V+ E  S+++KL    +  S        D+   S    ++   E + D+   SD  
Sbjct: 183 ADEQVSKELSSFLKKLKNQESKNSEDNDHTHKDLSFYSMMMSEEETAERVTDIF--SDKP 240

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM--LMPLSKPFN-WDFSHRPHVILV 116
                +   ++      + +  QR   D++E++ K+  L  L K        +   V+++
Sbjct: 241 YKHLSESKRDIRNGILLQRLINQRSNPDIAEIMKKVQTLPILDKREEILSIINANQVVVL 300

Query: 117 VGVNGVGKTT 126
            G  G GKTT
Sbjct: 301 CGETGCGKTT 310


>gi|53723108|ref|YP_112093.1| Clp protease ATPase [Burkholderia pseudomallei K96243]
 gi|76819843|ref|YP_336351.1| SciG protein [Burkholderia pseudomallei 1710b]
 gi|254185752|ref|ZP_04892270.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254264337|ref|ZP_04955202.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei 1710a]
 gi|52213522|emb|CAH39574.1| putative Clp protease ATPase [Burkholderia pseudomallei K96243]
 gi|76584316|gb|ABA53790.1| SciG protein [Burkholderia pseudomallei 1710b]
 gi|157933438|gb|EDO89108.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254215339|gb|EET04724.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei 1710a]
          Length = 888

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ E L  +   +       +  ++E I      L  P       +PH V L+ G +G
Sbjct: 578 VLKLAETLAERVVGQ----PHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 627

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L++ +       +      F+ A           T +    +  G     
Sbjct: 628 VGKTETALA-LAEMLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 676

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +  + +   V+++D   + H +             +   +       ++V+ + 
Sbjct: 677 QGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLT 736

Query: 238 DATTGQNALR 247
                +  ++
Sbjct: 737 SNVGSERVMQ 746


>gi|322690083|ref|YP_004209817.1| ABC transporter permease [Bifidobacterium longum subsp. infantis
           157F]
 gi|320461419|dbj|BAJ72039.1| putative ABC transporter permease component [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 609

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 27/184 (14%)

Query: 100 SKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSA 153
            KP   DFS        + +VG  G GKTT++  L +    +G  + +   DT    R  
Sbjct: 382 GKPIIHDFSASVKAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWN 441

Query: 154 AIDQLKIWADRT---------SADFVCSEIGSDAAALAYEAFK-----QAQAKKVDVLII 199
             DQ  +    T         +  +    +       A +A       ++     D ++ 
Sbjct: 442 VHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIEDACKAVGLDHFIRSLPDGYDTVLD 501

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D        S L  G  +++ + + +   AP  +L    ++        ++         
Sbjct: 502 D-------KSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVG 554

Query: 260 GLIM 263
               
Sbjct: 555 RTSF 558


>gi|312199576|ref|YP_004019637.1| ABC transporter [Frankia sp. EuI1c]
 gi|311230912|gb|ADP83767.1| ABC transporter related protein [Frankia sp. EuI1c]
          Length = 256

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           P+ +  +        V+L+ G NG GKTT +  L+  ++    +V  A   T
Sbjct: 46  PVVRDLDLPVRAGEVVVLL-GPNGAGKTTTLLTLAGALAPHSGEVHWAGAAT 96


>gi|255281202|ref|ZP_05345757.1| ABC transporter, ATP-binding protein [Bryantella formatexigens DSM
           14469]
 gi|255268159|gb|EET61364.1| ABC transporter, ATP-binding protein [Bryantella formatexigens DSM
           14469]
          Length = 286

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 104 NWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           N  F+     I+ ++G NG GKTT I  +   +   G  V +   D
Sbjct: 21  NISFTLPKGYIMGLIGPNGSGKTTTIKLILNMLKRTGGTVKVMGLD 66


>gi|170079483|ref|YP_001736118.1| ParA family plasmid partitioning protein [Synechococcus sp. PCC
           7002]
 gi|169887152|gb|ACB00863.1| plasmid partitioning protein, ParA family [Synechococcus sp. PCC
           7002]
          Length = 198

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 18/101 (17%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGK+T    ++  ++    K +L  GD  R+A                  S+ G     
Sbjct: 12  GVGKSTSAIHIAAYLA-RNQKTILIDGDPNRTA---------------LNWSQRGEMPFT 55

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNS--ILMAGIGKMI 219
           +A E          D ++IDT  R +++    L  G   +I
Sbjct: 56  VADERQAMRLITGHDFVVIDTPARPNSDDLQELAKGCDLLI 96


>gi|82654224|ref|NP_001032439.1| probable gluconokinase [Rattus norvegicus]
 gi|123780064|sp|Q32PY9|GNTK_RAT RecName: Full=Probable gluconokinase; AltName: Full=Gluconate
           kinase
 gi|81294200|gb|AAI07924.1| Similar to RIKEN cDNA 5133401N09 [Rattus norvegicus]
 gi|149039804|gb|EDL93920.1| rCG24247, isoform CRA_a [Rattus norvegicus]
          Length = 185

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           P V+LV+GV+G GK+TV   L+ K+   
Sbjct: 4   PGVLLVMGVSGSGKSTVGALLANKLGWK 31


>gi|18978319|ref|NP_579676.1| hypothetical protein PF1947 [Pyrococcus furiosus DSM 3638]
 gi|18894147|gb|AAL82071.1| hypothetical protein PF1947 [Pyrococcus furiosus DSM 3638]
          Length = 321

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 11/152 (7%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L+ +    D      L  + E   K    + K   +  +   +++ + G  G GK+T
Sbjct: 2   IDDLVERMRKGDRRAVARLITLVENDEKKAREIIKRI-YPLTGNAYIVGITGPPGSGKST 60

Query: 127 VIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSEIGSDAA 179
           ++ KL K+    GL V + A D    F   A+      ++  A                 
Sbjct: 61  LVDKLVKEARKEGLIVGVIAVDPTSPFTGGALLGDRIRMQDHATDPGVFIRSMATRGSLG 120

Query: 180 ALA---YEAFKQAQAKKVDVLIIDTAGRLHNN 208
            LA    +A K   A   D++ ++T G     
Sbjct: 121 GLAKATNDAIKILDAYGCDIIFVETVGVGQVE 152


>gi|90423262|ref|YP_531632.1| arginine/ornithine transport system ATPase [Rhodopseudomonas
           palustris BisB18]
 gi|90105276|gb|ABD87313.1| LAO/AO transport system ATPase [Rhodopseudomonas palustris BisB18]
          Length = 331

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 19/147 (12%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
            +  +L+  +L    +      +  P         GVGK+T I  L   + + G KV + 
Sbjct: 43  TEARKLVQALLPLTGQALRVGITGSP---------GVGKSTTIEALGMFLVERGHKVAVL 93

Query: 146 AGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           A D  + RS          + QL             +      AA   EA    +A   D
Sbjct: 94  AVDPTSARSGGSILGDKTRMAQLSSTDAAFIRPSPAAGTLGGVAAKTREAMLLCEAAGFD 153

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVL 222
           V++++T G   + + +       + ++
Sbjct: 154 VVLVETVGIGQSETAVCDMTDFFLALM 180


>gi|323485888|ref|ZP_08091223.1| ABC transporter [Clostridium symbiosum WAL-14163]
 gi|323400876|gb|EGA93239.1| ABC transporter [Clostridium symbiosum WAL-14163]
          Length = 286

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 104 NWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           N  F+     I+ ++G NG GKTT I  +   +   G  V +   D
Sbjct: 21  NISFTLPKGYIMGLIGPNGSGKTTTIKLILNMLKRTGGTVKVMGLD 66


>gi|322692022|ref|YP_004221592.1| ABC transporter permease [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456878|dbj|BAJ67500.1| putative ABC transporter permease component [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 609

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 27/184 (14%)

Query: 100 SKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSA 153
            KP   DFS        + +VG  G GKTT++  L +    +G  + +   DT    R  
Sbjct: 382 GKPIIHDFSASVKAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWN 441

Query: 154 AIDQLKIWADRT---------SADFVCSEIGSDAAALAYEAFK-----QAQAKKVDVLII 199
             DQ  +    T         +  +    +       A +A       ++     D ++ 
Sbjct: 442 VHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIEDACKAVGLDHFIRSLPDGYDTVLD 501

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D        S L  G  +++ + + +   AP  +L    ++        ++         
Sbjct: 502 D-------KSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVG 554

Query: 260 GLIM 263
               
Sbjct: 555 RTSF 558


>gi|292669341|ref|ZP_06602767.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648976|gb|EFF66948.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 700

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 24/124 (19%)

Query: 27  KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL-TKRYAKDVSVQRVL 85
           ++ E +  I++ R L+D +  ++ + L   D      + I  +++  +    +    +  
Sbjct: 97  RMTEQVAGILARRDLEDRIERKVNEKL-EKD-HEEYVEDIRRQVISEENPGAESPHDKKK 154

Query: 86  YDVSELIHKM-----LMPLSKPFNWD----------------FSHRPHVILVVGVNGVGK 124
            +  E +  +     +M L +P N+D                 S  P  +L+ G  GVGK
Sbjct: 155 REELEALENIHLTQSVMELLRPQNFDEIVGQERAVRSLMAKLSSPYPQHLLLYGPPGVGK 214

Query: 125 TTVI 128
           TT  
Sbjct: 215 TTAA 218


>gi|289627843|ref|ZP_06460797.1| general secretory pathway protein E [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 505

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 317 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 374


>gi|237736665|ref|ZP_04567146.1| ATP-dependent protease ATP-binding subunit [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420527|gb|EEO35574.1| ATP-dependent protease ATP-binding subunit [Fusobacterium
           mortiferum ATCC 9817]
          Length = 412

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 36  ISSRRLDDGVREEL-EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           +S   +   +  EL E+ L+         ++I E+L      +D + + +   V     +
Sbjct: 43  LSKEHIKSALPAELSEETLL-------TPKEIKEKLDEYVIGQDETKKILAVAVYNHYKR 95

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           +L    +        +   +L++G  G GKT +   L++ + 
Sbjct: 96  ILDNAERTDENAVELQKSNVLLIGPTGSGKTLLAQTLARSLK 137


>gi|224282289|ref|ZP_03645611.1| ABC transporter permease [Bifidobacterium bifidum NCIMB 41171]
 gi|313139433|ref|ZP_07801626.1| ABC-type multidrug transport system protein [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313131943|gb|EFR49560.1| ABC-type multidrug transport system protein [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 646

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 17/179 (9%)

Query: 100 SKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSA 153
            KP   DFS        + +VG  G GKTT++  L +    +G  + +   DT    R  
Sbjct: 419 DKPIIHDFSASVSAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGIDTTSVPRWN 478

Query: 154 AIDQLKIWADRTSA---DFVCSEIGSDAAALAYEAFKQAQAKKVDVLI------IDTAGR 204
             DQ  +    T         +   S       +     +A  +D  +       DT   
Sbjct: 479 VHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDEQIVSACKAVGLDHFVRSLPQGYDTV-- 536

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           L +N+ L  G  +++ + + +   AP  +L    ++        ++             
Sbjct: 537 LDDNTSLSQGQRQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSF 595


>gi|222109202|ref|YP_002551467.1| sulfate adenylate transferase subunit 1 [Agrobacterium vitis S4]
 gi|221738476|gb|ACM39341.1| sulfate adenylate transferase subunit 1 [Agrobacterium vitis S4]
          Length = 636

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           I++ +  +     + +   L     +  ++     +  +   + +P V+   G++G GK+
Sbjct: 410 IIDRMTNETAGAGM-IMHSLRRAGNITWQVQEVDREARSLIKNQKPVVLWFTGLSGAGKS 468

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           T+   L K++   G    L  GD  R  
Sbjct: 469 TIANLLEKRLHARGQHSYLLDGDNLRHG 496


>gi|253699251|ref|YP_003020440.1| general secretory pathway protein E [Geobacter sp. M21]
 gi|251774101|gb|ACT16682.1| general secretory pathway protein E [Geobacter sp. M21]
          Length = 520

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 22/130 (16%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKL--KEGITDIISSRRLDDGVREELEDLLIRSDI 58
           +S  KV  E+L+   K+  G      +L     I   ++ R +D      +   LI +  
Sbjct: 180 LSPPKVIQEALTSRVKIMSGLNIAEKRLPQDGRIRVKVAGRDVD------IRVSLIPTFF 233

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           G  V  +++++            QR +  + E+   +     +  +   S    +ILV G
Sbjct: 234 GERVVLRLLDK------------QRGVLSLKEI--GLSDGNDRLMDRLLSRTSGIILVTG 279

Query: 119 VNGVGKTTVI 128
             G GKTT +
Sbjct: 280 PTGSGKTTTL 289


>gi|169831690|ref|YP_001717672.1| cobyrinic acid a,c-diamide synthase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638534|gb|ACA60040.1| Cobyrinic acid a,c-diamide synthase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 287

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 8/95 (8%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--------TFRSAAIDQLK 159
           S    V +  G  G GKTTV   L+  +   G  V     D          R    ++ K
Sbjct: 4   SEPLTVAVASGKGGTGKTTVATNLAYVLERQGRPVWYVDCDVEEPNGHLFLRPGLTEEKK 63

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
           +       D          A +       A    +
Sbjct: 64  VTVPVPKVDLNRCVHCGLCAEICRYGAIAAVGDMI 98


>gi|224532285|ref|ZP_03672917.1| ATP-dependent Clp protease, subunit C [Borrelia valaisiana VS116]
 gi|224511750|gb|EEF82156.1| ATP-dependent Clp protease, subunit C [Borrelia valaisiana VS116]
          Length = 739

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL---YDVSELIHKMLMPL 99
           D +++ + ++L      +  A  I EE+L  +  ++   Q+V+   + VSE I +++  +
Sbjct: 410 DDIQKAINEIL-----SIKTANNIKEEILELKEVENKINQKVIGQKHAVSEFIKEIIK-V 463

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
               N DF      IL++G NG GKTT+ 
Sbjct: 464 KLGLNDDF-KPLTSILLIGSNGCGKTTLT 491


>gi|167394176|ref|XP_001740874.1| ATP-dependent RNA helicase [Entamoeba dispar SAW760]
 gi|165894827|gb|EDR22683.1| ATP-dependent RNA helicase, putative [Entamoeba dispar SAW760]
          Length = 812

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 17/100 (17%)

Query: 33  TDIISSRRLDDGVREEL-----EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
             I    ++DDG  E++     ED L          ++I+E L TK   +++  +R   D
Sbjct: 121 KSIDERSKIDDGSFEKMILQEDEDSL---------EREILE-LRTKEL-EEIPSKRTKQD 169

Query: 88  VSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTT 126
               I K L    K            ++++ G  G GKTT
Sbjct: 170 EMNEIRKSLPVYQKREEFLKLVRNNQIVIIAGETGSGKTT 209


>gi|197116991|ref|YP_002137418.1| type II secretion system ATPase GspE [Geobacter bemidjiensis Bem]
 gi|197086351|gb|ACH37622.1| type II secretion system ATPase GspE [Geobacter bemidjiensis Bem]
          Length = 520

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 22/130 (16%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKL--KEGITDIISSRRLDDGVREELEDLLIRSDI 58
           +S  KV  E+L+   K+  G      +L     I   ++ R +D      +   LI +  
Sbjct: 180 LSPPKVIQEALTSRVKIMSGLNIAEKRLPQDGRIRVKVAGRDVD------IRVSLIPTFF 233

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           G  V  +++++            QR +  + E+   +     +  +   S    +ILV G
Sbjct: 234 GERVVLRLLDK------------QRGVLSLKEI--GLSDGNDRLMDRLLSRTSGIILVTG 279

Query: 119 VNGVGKTTVI 128
             G GKTT +
Sbjct: 280 PTGSGKTTTL 289


>gi|89055298|ref|YP_510749.1| ATP-dependent protease ATP-binding subunit ClpX [Jannaschia sp.
           CCS1]
 gi|122498234|sp|Q28NI8|CLPX_JANSC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|88864847|gb|ABD55724.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Jannaschia sp.
           CCS1]
          Length = 421

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIV----EELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           D +REE +   ++SD GV   Q+I     + ++ + +AK V        +S  +H     
Sbjct: 46  DIIREETKSAGLKSDDGVPTPQEICGVLDDYVIGQAHAKRV--------LSVAVHNHYKR 97

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           L+     D       I+++G  G GKT +   L++ +
Sbjct: 98  LNHSDKSDIELAKSNIMLIGPTGCGKTLLAQTLARIL 134


>gi|15641923|ref|NP_231555.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121727847|ref|ZP_01680914.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae V52]
 gi|147674941|ref|YP_001217454.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae
           O395]
 gi|153217637|ref|ZP_01951318.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 1587]
 gi|227082051|ref|YP_002810602.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae M66-2]
 gi|229507983|ref|ZP_04397488.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae BX 330286]
 gi|229511780|ref|ZP_04401259.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae B33]
 gi|229515307|ref|ZP_04404767.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TMA 21]
 gi|229518917|ref|ZP_04408360.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC9]
 gi|229523941|ref|ZP_04413346.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae bv. albensis VL426]
 gi|229529053|ref|ZP_04418443.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae 12129(1)]
 gi|229607529|ref|YP_002878177.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio cholerae
           MJ-1236]
 gi|254286857|ref|ZP_04961809.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae AM-19226]
 gi|254849009|ref|ZP_05238359.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae MO10]
 gi|255745320|ref|ZP_05419269.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholera
           CIRS 101]
 gi|261210562|ref|ZP_05924855.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC341]
 gi|262156044|ref|ZP_06029164.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae INDRE 91/1]
 gi|262167883|ref|ZP_06035583.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC27]
 gi|297579439|ref|ZP_06941367.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae RC385]
 gi|298498041|ref|ZP_07007848.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MAK 757]
 gi|21263486|sp|Q9KQS7|CLPX_VIBCH RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|172047650|sp|A5F6Z1|CLPX_VIBC3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|254763872|sp|C3LNM5|CLPX_VIBCM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|9656457|gb|AAF95069.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121629883|gb|EAX62297.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae V52]
 gi|124113416|gb|EAY32236.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 1587]
 gi|146316824|gb|ABQ21363.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae O395]
 gi|150423007|gb|EDN14956.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae AM-19226]
 gi|227009939|gb|ACP06151.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae M66-2]
 gi|227013819|gb|ACP10029.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae O395]
 gi|229332827|gb|EEN98313.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae 12129(1)]
 gi|229337522|gb|EEO02539.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae bv. albensis VL426]
 gi|229343606|gb|EEO08581.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC9]
 gi|229348012|gb|EEO12971.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TMA 21]
 gi|229351745|gb|EEO16686.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae B33]
 gi|229355488|gb|EEO20409.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae BX 330286]
 gi|229370184|gb|ACQ60607.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae MJ-1236]
 gi|254844714|gb|EET23128.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae MO10]
 gi|255737150|gb|EET92546.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio cholera
           CIRS 101]
 gi|260840347|gb|EEX66918.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           RC341]
 gi|262023610|gb|EEY42311.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae RC27]
 gi|262030222|gb|EEY48866.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae INDRE 91/1]
 gi|297537033|gb|EFH75866.1| ATP-dependent protease ATP-binding subunit [Vibrio cholerae RC385]
 gi|297542374|gb|EFH78424.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae MAK 757]
 gi|327484464|gb|AEA78871.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae LMA3894-4]
          Length = 426

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   +KI E L      ++ + + +   V     ++    +
Sbjct: 46  NDIIREEIKDVLPKKESAALPTPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDT 105

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 106 TSEGVELGKSN--ILLIGPTGSGKTLLAETLARLL 138


>gi|332361268|gb|EGJ39072.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Streptococcus sanguinis SK1056]
          Length = 579

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVGK 124
            EE+  +  ++D+S Q    +   +         L +  N        V  +VG  G GK
Sbjct: 323 TEEVADQATSQDLSKQAGRVEFKHVKFGYTPDNLLMQDVNVTVEPGQKV-AIVGPTGAGK 381

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           TT+I  L +       ++++   DT R  + +QL+
Sbjct: 382 TTLINLLMRFYEINDGQILVDGVDT-RQMSREQLR 415


>gi|328791134|ref|XP_625184.3| PREDICTED: fidgetin-like protein 1-like [Apis mellifera]
          Length = 657

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 13/113 (11%)

Query: 21  FASTSLKLKEGI-TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV 79
           F     K++E +  + I +  ++D   + +E           + + I  E++  +     
Sbjct: 327 FKREKEKIQENMYNNEIDTMEVEDERLKNVE---------PKMVELIKNEIMDSKTTICW 377

Query: 80  SVQRVLYDVSELIHKMLM-PLSKP-FNWDFSHRPHVILVVGVNGVGKTTVIGK 130
                L    ++I ++++ P+ +P         P  IL+ G  G GKT  IGK
Sbjct: 378 DDIAGLEYAKKIIKEVVVYPMLRPDIFTGLRRPPKGILLFGPPGTGKTL-IGK 429


>gi|327401483|ref|YP_004342322.1| ParA/MinD-like ATPase [Archaeoglobus veneficus SNP6]
 gi|327316991|gb|AEA47607.1| ATPase-like, ParA/MinD [Archaeoglobus veneficus SNP6]
          Length = 255

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 97  MPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
             + +      +H    I ++ G  GVGK+TV   L+  ++  G  V +   D 
Sbjct: 8   DEIEETIKRKMAHIKRKIAVMSGKGGVGKSTVTALLAVHLAKQGKLVGILDADF 61


>gi|302765995|ref|XP_002966418.1| hypothetical protein SELMODRAFT_407935 [Selaginella moellendorffii]
 gi|300165838|gb|EFJ32445.1| hypothetical protein SELMODRAFT_407935 [Selaginella moellendorffii]
          Length = 141

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 8/85 (9%)

Query: 192 KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
           +K  V++I   GR        A        LK+     P  ++ V+D++  Q A  Q   
Sbjct: 5   RKNHVVMIVGVGRA------CADTAGAFDPLKQNATKNPDLIIFVMDSSIWQAANDQTLA 58

Query: 252 FHAVAGTTGLIMTKMDGTARGGGLI 276
           F   A    +I+TKMDG  RGG LI
Sbjct: 59  FIESAKVGAVIITKMDG--RGGALI 81


>gi|290770161|gb|ADD61920.1| putative protein [uncultured organism]
 gi|291557319|emb|CBL34436.1| ABC-type multidrug transport system, ATPase component [Eubacterium
           siraeum V10Sc8a]
          Length = 286

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 104 NWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           N  F+     I+ ++G NG GKTT I  +   +   G  V +   D
Sbjct: 21  NISFTLPKGYIMGLIGPNGSGKTTTIKLILNMLKRTGGTVKVMGLD 66


>gi|282163656|ref|YP_003356041.1| ABC transporter ATP binding protein [Methanocella paludicola SANAE]
 gi|282155970|dbj|BAI61058.1| ABC transporter ATP binding protein [Methanocella paludicola SANAE]
          Length = 301

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            +  V   VG NG GKTT IG L+  +   G K  +   +  R
Sbjct: 25  EKGQVCGFVGPNGAGKTTTIGMLAGLIEPTGGKCFIKDIEVAR 67


>gi|254561019|ref|YP_003068114.1| partitioning protein, ATPase [Methylobacterium extorquens DM4]
 gi|254268297|emb|CAX24234.1| putative partitioning protein, putative ATPase [Methylobacterium
           extorquens DM4]
          Length = 233

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTTV   L+ + S  G    +   D     +  Q    +          ++      
Sbjct: 13  GSGKTTVAIILAGEFSKHGYSAAIVDADPQ--GSSYQWHASSVARGLSPQGVDLVRAPDE 70

Query: 181 LAYEAFKQAQAKKVDVLIIDTAG 203
            A  A    +    DV++IDT G
Sbjct: 71  KAL-AQAIDRLDGYDVVVIDTPG 92


>gi|224532920|ref|ZP_03673531.1| cell division protein FtsH [Borrelia burgdorferi WI91-23]
 gi|224512158|gb|EEF82548.1| cell division protein FtsH [Borrelia burgdorferi WI91-23]
          Length = 350

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 54/182 (29%), Gaps = 24/182 (13%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K   KDV+ Q  +      + + L    K F    +  P  +L+VG  G GKT     
Sbjct: 166 KNKITFKDVAGQEEVKQELREVVEFLKN-PKKFEKIGAKIPKGVLLVGSPGTGKT----L 220

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L+K ++                A +    +        FV                    
Sbjct: 221 LAKAVAGE--------------AGVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNSPC 266

Query: 191 AKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              +D L  D  GR                + ++L  +D    H+ + V+ AT   + L 
Sbjct: 267 IIFIDEL--DAVGRSRGAGLGGGHDEREQTLNQLLVEMDGFGTHTNVIVMAATNRPDVLD 324

Query: 248 QV 249
             
Sbjct: 325 SA 326


>gi|213693279|ref|YP_002323865.1| ABC transporter related [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213524740|gb|ACJ53487.1| ABC transporter related [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 612

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 27/184 (14%)

Query: 100 SKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSA 153
            KP   DFS        + +VG  G GKTT++  L +    +G  + +   DT    R  
Sbjct: 385 GKPIIHDFSASVKAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWN 444

Query: 154 AIDQLKIWADRT---------SADFVCSEIGSDAAALAYEAFK-----QAQAKKVDVLII 199
             DQ  +    T         +  +    +       A +A       ++     D ++ 
Sbjct: 445 VHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIEDACKAVGLDHFIRSLPDGYDTVLD 504

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D        S L  G  +++ + + +   AP  +L    ++        ++         
Sbjct: 505 D-------KSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVG 557

Query: 260 GLIM 263
               
Sbjct: 558 RTSF 561


>gi|158335072|ref|YP_001516244.1| ABC transporter ATP-binding/permease [Acaryochloris marina
           MBIC11017]
 gi|158305313|gb|ABW26930.1| ABC transporter, ATP-binding/permease protein [Acaryochloris marina
           MBIC11017]
          Length = 604

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 104 NWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKM 135
           N     +P  VI +VG NG GKTT+I  L +  
Sbjct: 377 NVSLKLQPGQVIALVGENGSGKTTLIKLLCRLY 409


>gi|150391824|ref|YP_001321873.1| peptidase S16, lon domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951686|gb|ABR50214.1| peptidase S16, lon domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 787

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 19  KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD--IGVAVAQKIVEELLTKRYA 76
           +     S +L      I++  +  +   E+L  +L   D  IG  V   ++ +LL +   
Sbjct: 203 EALQKKSSQLNIETMSILTQIKAQE---EKLRKVLKELDEEIGYKVVNHLINKLLKRYSD 259

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           KD  ++  L D+ E I + +         D  +  + +L+
Sbjct: 260 KD-KIKAYLNDIEENIVEHIERFKTDEKDDHKNPNNRLLM 298


>gi|57867540|ref|YP_189223.1| ABC transporter ATP-binding protein [Staphylococcus epidermidis
           RP62A]
 gi|57638198|gb|AAW54986.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis
           RP62A]
          Length = 644

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 22/185 (11%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-KKMS 136
           D +    +  + +L      P++ P N +     H I ++G NGVGKTT+I  ++ KK  
Sbjct: 323 DRNTGNDVMHIHDLKIGYDSPITLPINLEIFKGDH-IAIIGPNGVGKTTLIKTIAEKKHK 381

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIW--ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             G  +  A     +    DQ +    +++T  D+V  +              +    + 
Sbjct: 382 LGGQIIFGANL---QIGYYDQKQAEFKSNKTILDYVWDQYPHMNEKDVRAVLGRFLFVQE 438

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG-----QNALRQV 249
           DV  I         + L   +  + R           +VL + + T       +  L Q 
Sbjct: 439 DVKKIINDLSGGEKARLQLALLMLQR----------DNVLILDEPTNHLDIDSKEMLEQA 488

Query: 250 EMFHA 254
                
Sbjct: 489 LKDFE 493


>gi|28198638|ref|NP_778952.1| general secretory pathway protein E [Xylella fastidiosa Temecula1]
 gi|28056722|gb|AAO28601.1| general secretory pathway protein E [Xylella fastidiosa Temecula1]
          Length = 583

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 111 PHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLK 159
           PH IL+V G  G GKTT +  +  +++  G+K++       ++   I+Q++
Sbjct: 333 PHGILLVTGPTGSGKTTTLYTVLNRLNTTGVKIITVEDPVEYQIEGINQIQ 383


>gi|326426653|gb|EGD72223.1| hypothetical protein PTSG_00244 [Salpingoeca sp. ATCC 50818]
          Length = 251

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 109 HRPHVILVV-GVNGVGKTTVIGKLSK 133
            RP V  +V G+ GVGKTT++ +L+ 
Sbjct: 35  QRPTVSALVLGLQGVGKTTMLTRLAN 60


>gi|325917977|ref|ZP_08180144.1| gluconate kinase, SKI family [Xanthomonas vesicatoria ATCC 35937]
 gi|325535800|gb|EGD07629.1| gluconate kinase, SKI family [Xanthomonas vesicatoria ATCC 35937]
          Length = 194

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGK-LSKKMSDAGLKVMLAAGDTFR-SAAIDQL 158
              S  P VI+V+GV+G GKTT I + L+               D +   AA  Q+
Sbjct: 8   TPASASPLVIVVMGVSGSGKTT-IAQALAAHYRFR-----FLDADDYHSVAARAQM 57


>gi|325276158|ref|ZP_08141963.1| ATP-dependent metalloprotease FtsH [Pseudomonas sp. TJI-51]
 gi|324098695|gb|EGB96736.1| ATP-dependent metalloprotease FtsH [Pseudomonas sp. TJI-51]
          Length = 634

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 201 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|256830913|ref|YP_003159641.1| cobalamin synthesis protein P47K [Desulfomicrobium baculatum DSM
           4028]
 gi|256580089|gb|ACU91225.1| cobalamin synthesis protein P47K [Desulfomicrobium baculatum DSM
           4028]
          Length = 640

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 18/185 (9%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
                RP +I++ G  G GKT+    L   +     +    A       A+       D 
Sbjct: 331 LGVDGRPPLIMLTGFLGSGKTSF---LKHFIEYQTQRSRFVAVIQNEIGAVGLDGKLLDY 387

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKV-DVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
              +     +    +     A K   +    D +I++T G       L      +  + +
Sbjct: 388 AVTEIDEGCVCCTLSGSLNRAVKGIMSSFDPDYIIVETTG-------LANPFNMLEEMEE 440

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQ---VEMFHAVAGTTGLIMTKMD--GTARGGGLIPI 278
             D     S+L V+DA   Q    +          A    +++ K D     R   +I +
Sbjct: 441 LTDLVRFDSILTVVDAPNAQQTFAEHSIAIDQLRAADI--VMLNKQDLVDADRLEAVIKM 498

Query: 279 VVTHK 283
           V  H 
Sbjct: 499 VKAHN 503


>gi|226329690|ref|ZP_03805208.1| hypothetical protein PROPEN_03602 [Proteus penneri ATCC 35198]
 gi|225202876|gb|EEG85230.1| hypothetical protein PROPEN_03602 [Proteus penneri ATCC 35198]
          Length = 424

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L  P  F       P  IL+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVEYLRDPGRFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|158297524|ref|XP_317746.4| AGAP007769-PA [Anopheles gambiae str. PEST]
 gi|157015237|gb|EAA12156.5| AGAP007769-PA [Anopheles gambiae str. PEST]
          Length = 341

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 75/213 (35%), Gaps = 28/213 (13%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLS 100
           +D   +E+++ L   +I   + + I  E++ +           L     +I + ++ P+ 
Sbjct: 31  EDSQEDEIDERL--RNIDPKMVELIRSEIMDRFQPLSWDDIAGLEYAKTIIKEAVVWPIL 88

Query: 101 KP-FNWDFSHRPHVILVVGVNGVGKTTVIGK-LSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           +P         P  IL+ G  G GKT  IGK ++ +              TF        
Sbjct: 89  RPDIFTGLRKPPRGILLFGPPGTGKTL-IGKCIASQSKS-----------TF-------F 129

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
            I A   ++ ++        A  A  A  Q     +D   ID+     +++   +     
Sbjct: 130 SISASSLTSKWIGDGEKMVRALFAVAAVHQPAVVFIDE--IDSLLCQRSDTEHESSRRLK 187

Query: 219 IRVLKRLD--PHAPHSVLQVLDATTGQNALRQV 249
              L +LD    A    + ++ AT     L + 
Sbjct: 188 TEFLVQLDGAATAEDERILIVGATNRPQELDEA 220


>gi|218531702|ref|YP_002422518.1| carbohydrate kinase, thermoresistant glucokinase family
           [Methylobacterium chloromethanicum CM4]
 gi|218524005|gb|ACK84590.1| carbohydrate kinase, thermoresistant glucokinase family
           [Methylobacterium chloromethanicum CM4]
          Length = 180

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
                S  P V++V+GV+G GK+TV   L++++         A GD F +
Sbjct: 1   MTVPRSFAPTVLVVMGVSGSGKSTVAALLAERLGW-----TFADGDDFHT 45


>gi|71891886|ref|YP_277616.1| hypothetical protein BPEN_101 [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71795992|gb|AAZ40743.1| HflB [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 642

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 158 EAKEEVKELVDYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 213

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 214 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 257

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D       + V+ AT   + L 
Sbjct: 258 QRGAGLGGGHDEREQTLNQMLVEMDGFEGKEGIIVIAATNRPDVLD 303


>gi|70734331|ref|YP_257971.1| ATP-dependent metalloprotease FtsH [Pseudomonas fluorescens Pf-5]
 gi|68348630|gb|AAY96236.1| ATP-dependent metalloprotease FtsH [Pseudomonas fluorescens Pf-5]
          Length = 634

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 201 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|322616999|gb|EFY13907.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618239|gb|EFY15131.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625909|gb|EFY22728.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626360|gb|EFY23170.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632776|gb|EFY29521.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639118|gb|EFY35811.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322647206|gb|EFY43705.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648405|gb|EFY44858.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655554|gb|EFY51862.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660332|gb|EFY56570.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663014|gb|EFY59221.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668198|gb|EFY64357.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674043|gb|EFY70137.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675606|gb|EFY71680.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682983|gb|EFY78999.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686678|gb|EFY82656.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323191921|gb|EFZ77164.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197864|gb|EFZ82989.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204490|gb|EFZ89496.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207580|gb|EFZ92528.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211126|gb|EFZ95975.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217566|gb|EGA02285.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323227488|gb|EGA11650.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231587|gb|EGA15700.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236030|gb|EGA20109.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240600|gb|EGA24643.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245493|gb|EGA29493.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323254440|gb|EGA38256.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255853|gb|EGA39599.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260130|gb|EGA43754.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266266|gb|EGA49756.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270743|gb|EGA54182.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 586

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 9/129 (6%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  LS   +   S    +I+++G  GVGKTT+   ++ +++  G  V L+  D    AA 
Sbjct: 311 LPSLSSLIDGFASQGYGLIMLMGKGGVGKTTLAAGIAVELARRGHPVHLSTSD---PAAH 367

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
               +            +  ++      +   +          +D  GR      L +  
Sbjct: 368 LTNTLDGSFDGLTVSRIDPQAETERYRQQVMAEQGKN------LDEQGRAVLEEDLRSPC 421

Query: 216 GKMIRVLKR 224
            + I V + 
Sbjct: 422 TEEIAVFQA 430


>gi|307947305|ref|ZP_07662639.1| plasmid partitioning protein RepA [Roseibium sp. TrichSKD4]
 gi|307769447|gb|EFO28674.1| plasmid partitioning protein RepA [Roseibium sp. TrichSKD4]
          Length = 394

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 14/165 (8%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGV-NGVGKTTVIGKLSKKMSDAG 139
             + +  + + K     SK +      + +  VI VV    G GKTT    L++ +S  G
Sbjct: 84  EQIEEARQFLDKTGKSASKKYVPQRRDNDKLQVIAVVNFKGGSGKTTTTAHLAQHLSLTG 143

Query: 140 LKVMLAAGDTF-RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL- 197
            +V+    D     +A+   +   D+  + +       +   +     ++     +D++ 
Sbjct: 144 HRVLAVDLDPQGSLSALHGFQPELDKNLSLYDAIRYDEERKDI-QATIQKTNFPMLDIIP 202

Query: 198 --------IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
                     DT   +  ++       ++ R L+ +DP+    V+
Sbjct: 203 ANIELQEFEYDTPVAMQTSNEGKTFFSRIARSLEHIDPNYDVVVI 247


>gi|293393159|ref|ZP_06637474.1| ATP-dependent metallopeptidase HflB [Serratia odorifera DSM 4582]
 gi|291424305|gb|EFE97519.1| ATP-dependent metallopeptidase HflB [Serratia odorifera DSM 4582]
          Length = 643

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVDYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                           + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|296135339|ref|YP_003642581.1| ABC transporter related protein [Thiomonas intermedia K12]
 gi|295795461|gb|ADG30251.1| ABC transporter related protein [Thiomonas intermedia K12]
          Length = 299

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 3/143 (2%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR--SAAIDQLKIWADRTSADFVCSE 173
           ++G NG GKTT+I  L+         V +A  D  R  +AA   L +       D   + 
Sbjct: 38  LLGPNGAGKTTLISMLAGLTRPTSGHVRVAGFDVQRDAAAARRLLGVVPQELVFDPFFTV 97

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                    Y  F+Q     +D L+ +       +  + A  G M R +           
Sbjct: 98  RQVLRIQSGYFGFRQ-NDPWIDELLHNLGLTAQADKNMRALSGGMKRRVMVAQALVHRPQ 156

Query: 234 LQVLDATTGQNALRQVEMFHAVA 256
           + VLD  T    +   +      
Sbjct: 157 VIVLDEPTAGVDVELRQSLWEFI 179


>gi|251789956|ref|YP_003004677.1| recombination factor protein RarA [Dickeya zeae Ech1591]
 gi|247538577|gb|ACT07198.1| AAA ATPase central domain protein [Dickeya zeae Ech1591]
          Length = 434

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 86  YDVSELI-HKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKL-SKKMSDAGLKV 142
             + E+I    L+   KP    F S +PH ++  G  GVGKTT + +L +       + +
Sbjct: 20  RTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGKTT-LARLTANYFDCEFIAL 78

Query: 143 MLAAGDTFRS-AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
                      AA++Q +   DR     +  +          +A 
Sbjct: 79  SAVFSGVKDIRAAMEQAQQNLDRGKKTILFVDEIHRFNKSQQDAL 123


>gi|241894878|ref|ZP_04782174.1| DEAH-family helicase [Weissella paramesenteroides ATCC 33313]
 gi|241871886|gb|EER75637.1| DEAH-family helicase [Weissella paramesenteroides ATCC 33313]
          Length = 445

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           ++   + L      + ++    ++VV   G GKT  + +++K+ +D G +V+       R
Sbjct: 5   LYDYQLELIDGIYKELTNGHKHVMVVSPAGSGKTVTMAEIAKRTTDKGNRVLFV---VHR 61

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
              ++Q+K    +   +       +D   +     K+ +    DV+ +D A
Sbjct: 62  VEIVNQVKNSFTKHGVNM----DLADVGMIKTIERKKDKLTHPDVVFVDEA 108


>gi|212634184|ref|YP_002310709.1| putative ABC transporter ATP-binding protein [Shewanella
           piezotolerans WP3]
 gi|212555668|gb|ACJ28122.1| ABC transporter, ATP-binding protein [Shewanella piezotolerans WP3]
          Length = 555

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 23/127 (18%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I V+G+NG GK+T++              ++A  DT     I+            ++  E
Sbjct: 35  IGVLGLNGSGKSTLL-------------RIMAGLDT----EIEGEARPMQDLKIGYLPQE 77

Query: 174 IGSDAAALAYEAFKQAQAK------KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              D +    EA ++A +       ++D +    A    +   L    G++  +++  D 
Sbjct: 78  PKLDPSQTVREAIEEAVSDAKNALVRLDEVYALYAEPDADFDALAKEQGQLEAIIQSQDA 137

Query: 228 HAPHSVL 234
           H    VL
Sbjct: 138 HNLDVVL 144


>gi|204929096|ref|ZP_03220239.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321640|gb|EDZ06839.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 586

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 9/129 (6%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  LS   +   S    +I+++G  GVGKTT+   ++ +++  G  V L+  D    AA 
Sbjct: 311 LPSLSSLIDGFASQGYGLIMLMGKGGVGKTTLAAGIAVELARRGHPVHLSTSD---PAAH 367

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
               +            +  ++      +   +          +D  GR      L +  
Sbjct: 368 LTNTLDGSFDGLTVSRIDPQAETERYRQQVMAEQGKN------LDEQGRAVLEEDLRSPC 421

Query: 216 GKMIRVLKR 224
            + I V + 
Sbjct: 422 TEEIAVFQA 430


>gi|147795940|emb|CAN67431.1| hypothetical protein VITISV_015133 [Vitis vinifera]
          Length = 1237

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 34/119 (28%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREE-------LEDLLIRSDIGVAVAQKIV 67
           R LT+G  +++ KL     D I+ RRLD  +RE        +E+ L            +V
Sbjct: 92  RSLTEGSQASTSKL-----DAIAKRRLDVHLREGVGGVSFGIEERL--------PTTSLV 138

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E  ++ + +D        D  ++I  ML   +   +     +  +I +VG+ G+GKTT
Sbjct: 139 DE--SRIHGRD-------ADKEKIIELMLSDEATQVD-----KVSIISIVGMGGIGKTT 183


>gi|123966592|ref|YP_001011673.1| AAA family ATPase [Prochlorococcus marinus str. MIT 9515]
 gi|123200958|gb|ABM72566.1| ATPase of the AAA+ family [Prochlorococcus marinus str. MIT 9515]
          Length = 488

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 16/131 (12%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGV 60
           ++  ++ + L+ +   + G + T LK       +    ++  D +++ LE+         
Sbjct: 159 TDSDLSEQDLNELAIASSGLSETKLKQVTA-KALTQRGKISKDDIKDILEEK-------- 209

Query: 61  AVAQKIVEE---LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
              ++++     L         +    L  +   + +     SK         P  +L+V
Sbjct: 210 ---KQVIARSEILEFFESNSTQNEVGGLKVLKVWLKQRYRAFSKEARDYGLPIPKGVLLV 266

Query: 118 GVNGVGKTTVI 128
           G  G GK+   
Sbjct: 267 GPQGTGKSLTA 277


>gi|121594424|ref|YP_986320.1| twitching motility protein [Acidovorax sp. JS42]
 gi|222111084|ref|YP_002553348.1| twitching motility protein [Acidovorax ebreus TPSY]
 gi|120606504|gb|ABM42244.1| twitching motility protein [Acidovorax sp. JS42]
 gi|221730528|gb|ACM33348.1| twitching motility protein [Acidovorax ebreus TPSY]
          Length = 387

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 94/292 (32%), Gaps = 45/292 (15%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
           K  +++I+   R+     EELE+     ++GV +    V         +  +   V+  +
Sbjct: 49  KNLLSEIVPPDRI-----EELEETG-ELNMGVPLTG--VGRFRVSAMRQRGTYAVVIRFI 100

Query: 89  SELIHKM----LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           ++ I ++    L P+      +      +IL+VG  G GK+T    L+  +      +  
Sbjct: 101 TQNIPQLSTLHLPPVLSELIMEKRG---LILLVGATGSGKSTT---LAAMLDARNESM-- 152

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               T     ++    +  +     V              A K A  +  DV++I   G 
Sbjct: 153 ----TGHILTVEDPVEYQFKNKKSIVNQREIGSDTQSLQTALKNALRQAPDVILI---GE 205

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           + +   + A I             + H  L  L      +AL ++  F+        ++ 
Sbjct: 206 IRDRETMSAAIA---------YAQSGHLCLATLHGNNSYHALNRILSFY-PVEVRPTML- 254

Query: 265 KMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDY 316
                  G     +       +     GE +   E  +     A +    D+
Sbjct: 255 -------GDLASALKAIISQRLVRTTTGERVPAAEVMLNTKLVAELVEKGDF 299


>gi|50289975|ref|XP_447419.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526729|emb|CAG60356.1| unnamed protein product [Candida glabrata]
          Length = 181

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           SK F+  F ++   IL+VG++G GKTTV+ KL  
Sbjct: 6   SKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKL 39


>gi|2828265|emb|CAA11245.1| hypothetical protein [Sinorhizobium meliloti]
          Length = 240

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
                +  V G  G GKTT +  ++ + +  G +V+L   D  R    +  K    + + 
Sbjct: 3   RLPQFISAVSGKGGAGKTTAVILIAGEYALQGQRVLLIDADG-RQNLQEWWKRCEAKDNL 61

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
                E+ + A     +   + +A + DV+++D+ G+  
Sbjct: 62  PAN-IELITAARQTTVQQLLETEANRFDVVLMDSPGQDT 99


>gi|78212579|ref|YP_381358.1| hypothetical protein Syncc9605_1045 [Synechococcus sp. CC9605]
 gi|78197038|gb|ABB34803.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 179

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 19/131 (14%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
             RP   L++G  G GK+T+   L+  +S       + + D  R    +QL  W D    
Sbjct: 3   EPRPQGHLLIGPPGSGKSTLAAILAPLLSAE-----VISTDALR----EQL--WGDAN-- 49

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT--AGRLHNNSILMAGIGKMIRVLKRL 225
                   S+     + A  +A A   D +++D   A R     ++   +G         
Sbjct: 50  ---VQSPWSELEPHLHGAIDRAIADG-DNVLVDATHAQRDWRQRLMHRSMGGQHAEWTGW 105

Query: 226 DPHAPHSVLQV 236
               P     V
Sbjct: 106 WLQTPLDQCLV 116


>gi|34557847|ref|NP_907662.1| ATP-dependent Zn protease [Wolinella succinogenes DSM 1740]
 gi|34483565|emb|CAE10562.1| ATPASE EC 3.4.24.-ATP-dependent Zn proteases [Wolinella
           succinogenes]
          Length = 579

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 58/179 (32%), Gaps = 21/179 (11%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           L+K   +DV+  + + +  E I   L   +K   +     P  +L++G  GVGKT  I K
Sbjct: 175 LSKVTFEDVAGIKEVKEELEEIIDFLKNPAKYQKFGTKL-PKGVLLMGPPGVGKTL-IAK 232

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
                          AG+    A +          +  +V                    
Sbjct: 233 -------------AVAGE----AGVPFFYQSGSSFAQIYVGMGAKRVRDLFMRAKLSAPS 275

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              +D   ID  G+             + ++L  +D     S + V+ AT   + L + 
Sbjct: 276 IIFIDE--IDAVGKARGGLRNDERETTLNQLLTEMDGFEDSSGVIVIGATNKIDVLDEA 332


>gi|15603569|ref|NP_246643.1| ClpB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|54035898|sp|Q9CKC0|CLPB_PASMU RecName: Full=Chaperone protein ClpB
 gi|12722113|gb|AAK03788.1| ClpB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 855

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 14/164 (8%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNW 105
           EE+ ++L R+  G+ VA K++E    K    +  + + +    E I  +   + +     
Sbjct: 533 EEIAEVLSRA-TGIPVA-KMMEGEKEKLLRMEEELHKRVIGQHEAIEAVSNAIRRSRAGL 590

Query: 106 DFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              +RP    L +G  GVGKT +   L+  +     +  +   D       + ++  +  
Sbjct: 591 SDPNRPIGSFLFLGPTGVGKTELCKTLANFL--FDDENAMVRIDMS-----EFMEKHSVS 643

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                    +G +      EA ++   +   V+++D   + H++
Sbjct: 644 RLVGAPPGYVGYEEGGYLTEAVRR---RPYSVILLDEVEKAHHD 684


>gi|325182391|emb|CCA16844.1| cell division cycle protein 48 putative [Albugo laibachii Nc14]
          Length = 854

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 24/188 (12%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRP---HVILVVGVNGVGKTTVIGK-LSKKMSDAGLK 141
             +   +H+++    +P              IL+ G +G GK+  + K L+ + +   + 
Sbjct: 584 EKLQTELHEVVDASFRPSEAMKRLGVMPSSGILLYGPSGCGKSL-LAKVLAARANVNFVS 642

Query: 142 VMLAA------GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           +  +       GD+ +  AI Q+   A   S   +  +      A+A + F +AQ K  D
Sbjct: 643 IKSSEIMSKYFGDSEQ--AIRQVFARARSASPSILFFDEFD---AVACKRFGEAQTKGSD 697

Query: 196 VLIIDTAGRLHNNSIL------MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
               D  G    N IL      M GIG   R   +         + V+ AT   +AL Q 
Sbjct: 698 AAAFD--GSSVYNRILSTFLNEMDGIGHAKRSGYQAQKTENRKQVLVIAATNRVDALDQA 755

Query: 250 EMFHAVAG 257
            +      
Sbjct: 756 LIRPGRID 763


>gi|322836402|ref|YP_004215779.1| LexA family transcriptional regulator [Rahnella sp. Y9602]
 gi|321170955|gb|ADW76652.1| LexA DNA-binding domain protein [Rahnella sp. Y9602]
          Length = 211

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFV 170
           I+++G    G GK+T    +S +++  G  VML   D  R   A +   I     + D  
Sbjct: 2   IILIGSQKGGCGKSTTAANISAELARQGKDVMLVDAD--RQGTASNW--ISDRNQNTDLP 57

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                     +         AK+ + +++D+AGR    
Sbjct: 58  KIHSIQKFDNI--HETLSDLAKRYEYVVVDSAGRDSRE 93


>gi|315453968|ref|YP_004074238.1| ATPase AAA-2 domain-containing protein [Helicobacter felis ATCC
           49179]
 gi|315133020|emb|CBY83648.1| ATPase AAA-2 domain protein [Helicobacter felis ATCC 49179]
          Length = 608

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGK 124
           I + L  +   +       +  V ++I +     S   +   S +P  V+  VG  GVGK
Sbjct: 290 ICQALEKRVKGQ----HHAIRKVEKVIIRAFTGFSGAAHSAKSQKPKWVLFFVGPTGVGK 345

Query: 125 TTVIGK-LSKKM 135
            T + K L++ +
Sbjct: 346 -TELAKSLAEFL 356


>gi|294782877|ref|ZP_06748203.1| lipid A export ATP-binding/permease protein MsbA [Fusobacterium sp.
           1_1_41FAA]
 gi|294481518|gb|EFG29293.1| lipid A export ATP-binding/permease protein MsbA [Fusobacterium sp.
           1_1_41FAA]
          Length = 583

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 16/116 (13%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPLSKP 102
           +L+D L  +D    V +   E++ T  + + V     + ++               + K 
Sbjct: 305 DLQDSLPSAD---RVVEIFDEKIETDVFGEAVEFDEKIENIKFENINYKYEDSNDYVLKN 361

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-------AGLKVMLAAGDTFR 151
            N +      ++  VG +G GKTT++  L++  +         G+ +       +R
Sbjct: 362 INLNVKAG-EIVAFVGKSGSGKTTLVNLLARFFNTDEGSVTVNGVNIKNIPLGIYR 416


>gi|282861770|ref|ZP_06270834.1| ABC transporter transmembrane region [Streptomyces sp. ACTE]
 gi|282563586|gb|EFB69124.1| ABC transporter transmembrane region [Streptomyces sp. ACTE]
          Length = 639

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFS 108
           L++S  GVA A+++ E L  +    D        ++   +    +       KP   D S
Sbjct: 357 LLQS--GVASAERVFELLDAEEQGPDPVEAERPKELRGSVVLEKVSFRYDPEKPLIEDLS 414

Query: 109 HRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            R      + +VG  G GKTT++  L +     G ++ L   D  +
Sbjct: 415 LRVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDVSK 460


>gi|239621096|ref|ZP_04664127.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239516018|gb|EEQ55885.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 609

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 27/184 (14%)

Query: 100 SKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSA 153
            KP   DFS        + +VG  G GKTT++  L +    +G  + +   DT    R  
Sbjct: 382 GKPIIHDFSASVKAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWN 441

Query: 154 AIDQLKIWADRT---------SADFVCSEIGSDAAALAYEAFK-----QAQAKKVDVLII 199
             DQ  +    T         +  +    +       A +A       ++     D ++ 
Sbjct: 442 VHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIEDACKAVGLDHFIRSLPDGYDTVLD 501

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D        S L  G  +++ + + +   AP  +L    ++        ++         
Sbjct: 502 D-------KSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVG 554

Query: 260 GLIM 263
               
Sbjct: 555 RTSF 558


>gi|223985091|ref|ZP_03635187.1| hypothetical protein HOLDEFILI_02492 [Holdemania filiformis DSM
           12042]
 gi|223962913|gb|EEF67329.1| hypothetical protein HOLDEFILI_02492 [Holdemania filiformis DSM
           12042]
          Length = 539

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           G+++  ++ E++      +      ++ D    + + L  L+         +  ++L+ G
Sbjct: 230 GISMVSQLNEKIREGCLPQ------LIKDNENRVARDLDTLADQIAARPELK--IVLIAG 281

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  GKTT   +L+  + + G   +  + D F
Sbjct: 282 PSSAGKTTFSRRLAFALHERGRNPIAISMDDF 313


>gi|118486201|gb|ABK94943.1| unknown [Populus trichocarpa]
          Length = 749

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 14/129 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV--- 170
           I++VG+   GKT    KL++ +   G          +R     +LK      SADF    
Sbjct: 348 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR-----RLK-HGANQSADFFRAD 401

Query: 171 ---CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG--RLHNNSILMAGIGKMIRVLKRL 225
                E  ++ AALA +       +   V I D     R   N ++    GK    +  L
Sbjct: 402 NPEGMEARNEVAALAMDDMIAWMQEGGQVGIFDATNSTRKRRNMLMKMAEGKCKLQIIFL 461

Query: 226 DPHAPHSVL 234
           +       +
Sbjct: 462 ETLCNDEHI 470


>gi|160942939|ref|ZP_02090178.1| hypothetical protein FAEPRAM212_00416 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445840|gb|EDP22843.1| hypothetical protein FAEPRAM212_00416 [Faecalibacterium prausnitzii
           M21/2]
          Length = 769

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 20/141 (14%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             L  K   +D      ++ V++ I +    LS         RP   + VG  GVGKT +
Sbjct: 474 NALKQKVIGQD----EAVHLVAQAIKRSRADLSG------RRRPASFIFVGPTGVGKTEL 523

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           + +L++++ D    ++            D  +       +  + S  G      A +  +
Sbjct: 524 VKQLAEQLFDGPDPLIRL----------DMSEYMEKYAVSRMIGSPPGYVGYEEAGQLTE 573

Query: 188 QAQAKKVDVLIIDTAGRLHNN 208
           + + +   V++ D   + H +
Sbjct: 574 KVRRRPYSVVLFDEIEKAHPD 594


>gi|116255068|ref|YP_770902.1| replication protein RepA [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259716|emb|CAK02801.1| replication protein RepA [Rhizobium leguminosarum bv. viciae 3841]
          Length = 398

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN---GVGKTTVIGKLSKKMSDAG 139
             +  + E + +      + ++   S R H+ ++  VN   G GKTT    L++ ++  G
Sbjct: 86  ETIQALREYLDEN-GKGDRRYSPRRSGREHLQVITAVNFKGGSGKTTTAAHLAQYLALNG 144

Query: 140 LKVMLAAGD 148
            +V+    D
Sbjct: 145 YRVLAIDLD 153


>gi|939962|emb|CAA61616.1| repA protein [Rhizobium leguminosarum]
          Length = 398

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN---GVGKTTVIGKLSKKMSDAG 139
             +  + E + +      + ++   S R H+ ++  VN   G GKTT    L++ ++  G
Sbjct: 86  ETIQALREYLDEN-GKGDRRYSPRRSGREHLQVITAVNFKGGSGKTTTAAHLAQYLALNG 144

Query: 140 LKVMLAAGD 148
            +V+    D
Sbjct: 145 YRVLAIDLD 153


>gi|254253398|ref|ZP_04946716.1| ATPase with chaperone activity ATP-binding subunit [Burkholderia
           dolosa AUO158]
 gi|124896007|gb|EAY69887.1| ATPase with chaperone activity ATP-binding subunit [Burkholderia
           dolosa AUO158]
          Length = 888

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 611 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMVTINMSEYQEAHSVSGLK- 668

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 669 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 718

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 719 TMDDAEGREIDFRNTLIILTSNVGSAAVMQA 749


>gi|330807477|ref|YP_004351939.1| cell division protein FtsH [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375585|gb|AEA66935.1| Putative cell division protein FtsH [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 636

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 201 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|302206817|gb|ADL11159.1| ATP-binding/permease protein cydC [Corynebacterium
           pseudotuberculosis C231]
 gi|308277069|gb|ADO26968.1| ATP-binding/permease protein cydC [Corynebacterium
           pseudotuberculosis I19]
          Length = 521

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 18/169 (10%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           EL    I +D+ V+ A + + E+  K        +  L+  + L    L  L     WDF
Sbjct: 291 ELAKASIHADV-VSTASQALAEVTGKALPS--PPEASLFTDTTLKVSHLQCLHTDKTWDF 347

Query: 108 SHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-- 164
           +  P+   ++ G +GVGKTT++  L+  +           GD+  +A    +++  +   
Sbjct: 348 TLAPNERRLITGPSGVGKTTLLYTLAGLLEPRSGSAS-IGGDSSAAARRSLIRMHPENEW 406

Query: 165 ----TSADFVCSEIGSDAAALAYEAFKQ-------AQAKKVDVLIIDTA 202
                  + +         AL     +           + +D +++D A
Sbjct: 407 LFSTNIRENIRVANPDAPDALIEATLRALGMGQWLDTNQGLDTVLVDGA 455


>gi|300859122|ref|YP_003784105.1| ABC transporter ATPase/permease [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300686576|gb|ADK29498.1| ABC transport system, ATPase and permease components
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302331379|gb|ADL21573.1| ABC transporter, CydDC cysteine exporter family,
           permease/ATP-binding protein [Corynebacterium
           pseudotuberculosis 1002]
          Length = 521

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 18/169 (10%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           EL    I +D+ V+ A + + E+  K        +  L+  + L    L  L     WDF
Sbjct: 291 ELAKASIHADV-VSTASQALAEVTGKALPS--PPEASLFTDTTLKVSHLQCLHTDKTWDF 347

Query: 108 SHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR-- 164
           +  P+   ++ G +GVGKTT++  L+  +           GD+  +A    +++  +   
Sbjct: 348 TLAPNERRLITGPSGVGKTTLLYTLAGLLEPRSGSAS-IGGDSSAAARRSLIRMHPENEW 406

Query: 165 ----TSADFVCSEIGSDAAALAYEAFKQ-------AQAKKVDVLIIDTA 202
                  + +         AL     +           + +D +++D A
Sbjct: 407 LFSTNIRENIRVANPDAPDALIEATLRALGMGQWLDTNQGLDTVLVDGA 455


>gi|299140604|ref|ZP_07033742.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Prevotella oris
           C735]
 gi|298577570|gb|EFI49438.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Prevotella oris
           C735]
          Length = 299

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 43/174 (24%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS--------AAIDQLKIWA-DR 164
           ++V+G  GVGKT +  KL++ +        +   D+ +         AA  Q +  A   
Sbjct: 5   VVVLGPTGVGKTELCIKLAQYLK-----SPIINADSRQIFAEIPIGTAAPTQEQQHAITH 59

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKV------------------------DVLIID 200
                   +    AA    +A +  ++                           D+  +D
Sbjct: 60  YFVGNHSIKDYYSAAKYETDALELMESLFHQGHETLLLTGGSMMYIDAVCNGIDDIPTVD 119

Query: 201 TAGRLHNNSILMAGI-GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
              R      L       ++  LK+LDP        V+D    +  +  +E+ +
Sbjct: 120 QKTRDLLKKKLTEEGLDHLVEELKQLDP----EHYLVVDKKNPRRVVHALEICY 169


>gi|254472982|ref|ZP_05086380.1| cell division protease FtsH [Pseudovibrio sp. JE062]
 gi|211957703|gb|EEA92905.1| cell division protease FtsH [Pseudovibrio sp. JE062]
          Length = 641

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 65  KIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           K++ E   +   +DV+ +     D+ E++  +  P  + F       P  +L+VG  G G
Sbjct: 143 KLLNEASGRVTFEDVAGIDEAKEDLQEIVEFLRDP--QKFQRLGGRIPRGVLLVGPPGTG 200

Query: 124 KTTVI 128
           KT   
Sbjct: 201 KTLTA 205


>gi|170719900|ref|YP_001747588.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida W619]
 gi|169757903|gb|ACA71219.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida W619]
          Length = 634

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 201 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|154174705|ref|YP_001407919.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Campylobacter curvus 525.92]
 gi|112803370|gb|EAU00714.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Campylobacter curvus 525.92]
          Length = 159

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I   G +  GKTT+I K++K   D GLK  +   D
Sbjct: 6   IAFSGPSNSGKTTLILKVAKHFIDQGLKTAVVKHD 40


>gi|53980833|gb|AAV24754.1| putative RGH1A [Oryza sativa Japonica Group]
          Length = 1011

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 21/142 (14%)

Query: 21  FASTSLKLKEGITDIISSRRLD---DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
                 KL +      + R++      + ++ E       +     +  V+ ++ K  A 
Sbjct: 23  LLRLRKKLGKLFKKSKARRKISNLIQDINKKFEQ------VKARHVKYTVDSVVLKSLAA 76

Query: 78  ---DVSVQRVLYDVSELI------HKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTV 127
              D  +Q +    +EL+        ++  LS   + D S +   VI VVG  G+GKTT 
Sbjct: 77  TTIDPRLQNLYKRATELVGIDGPRDDLINKLSLGGDVDVSDKKMKVISVVGFGGLGKTT- 135

Query: 128 IGKLSK-KMSDAGLKVMLAAGD 148
           + K                  D
Sbjct: 136 LAKAVYDHFKPHFKCRASVPVD 157


>gi|86604737|ref|YP_473500.1| FtsH family metalloprotease [Synechococcus sp. JA-3-3Ab]
 gi|86553279|gb|ABC98237.1| metalloprotease, ATP-dependent, FtsH family [Synechococcus sp.
           JA-3-3Ab]
          Length = 628

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 27/184 (14%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIG 129
             +          + +  E + +++  L KP  F    +  P  +L+VG  G GKT    
Sbjct: 159 EAKTGVKFDDVAGIEEAKEELQEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKT---- 214

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            L+K ++        +   +                  +       S    L  +A + A
Sbjct: 215 LLAKAIAGEAGVPFFSLSGS---------------EFVEMFVGVGASRVRDLFKKAKENA 259

Query: 190 QAK-KVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
                +D   ID  GR                + ++L  +D    +S + V+ AT   + 
Sbjct: 260 PCIVFIDE--IDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNSGVIVIAATNRPDV 317

Query: 246 LRQV 249
           L   
Sbjct: 318 LDAA 321


>gi|292615368|ref|XP_002662629.1| PREDICTED: hypothetical protein LOC100332081 [Danio rerio]
          Length = 875

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 72/195 (36%), Gaps = 37/195 (18%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL--KIWAD 163
           D + +  V+L+VG  G GKTT+I  +   +    L V     + ++     Q   +  + 
Sbjct: 406 DRNKQNKVLLMVGETGTGKTTLINTMINHL----LGVKFEDQEFYQITEEKQQEDQSQSQ 461

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG----RLHNNSILMAGIGKMI 219
            +        +  +  +L                IIDT G    R H     +A    + 
Sbjct: 462 TSEITVYEVFVEENPTSLT---------------IIDTPGYGDTRGHEKDAEIAEY--LS 504

Query: 220 RVLKRLDPHAP-HSVLQVLDATTGQNALRQVEMFHAVAGTTG--------LIMTKMDGTA 270
           R+    D      +V  V+ A+  + + +++ +FHAV    G         ++T  DG  
Sbjct: 505 RLFADKDGVRDIDAVCFVMKASQNRLSGKELYIFHAVLSLFGRDIENNIVFLLTHSDG-G 563

Query: 271 RGGGLIPIVVTHKIP 285
                + ++   +IP
Sbjct: 564 LPTDALSVIYKAEIP 578


>gi|123440807|ref|YP_001004798.1| ATP-dependent metalloprotease [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087768|emb|CAL10554.1| cell division protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 644

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|119873439|ref|YP_931446.1| ABC transporter related [Pyrobaculum islandicum DSM 4184]
 gi|119674847|gb|ABL89103.1| ABC transporter related [Pyrobaculum islandicum DSM 4184]
          Length = 217

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-------SDAGLKVML 144
           + K L              P V  VVG NG GKTT++  L+  +          G+   +
Sbjct: 7   VEKRLGDFL--LRAAGRLEPGVTCVVGPNGSGKTTLLKILAGLLKPDGGWVKYGGVSSRV 64

Query: 145 AAGDTF 150
             GD +
Sbjct: 65  YVGDLY 70


>gi|108761992|ref|YP_632984.1| ClpB family protein [Myxococcus xanthus DK 1622]
 gi|108465872|gb|ABF91057.1| ClpB family protein [Myxococcus xanthus DK 1622]
          Length = 1149

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 67/167 (40%), Gaps = 24/167 (14%)

Query: 51  DLLIRSD--IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           + L+R D  +  A  +     L ++   +D +V+R    VS ++   +  + +P      
Sbjct: 512 EHLLRDDQPLASAHVRDF---LASRVMGQDAAVERAASVVS-VLKAGMSDVRRPLG---- 563

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
               V+L VG  GVGKT +   L++ +  A  +++      + +     L++  D  +  
Sbjct: 564 ----VLLFVGPTGVGKTELSKALAELLFGAKERMVRLDMGEY-AGPDALLRLMGDGETPG 618

Query: 169 FVCSEIGSDA-AALAYEAFKQAQAKKVDVL--------IIDTAGRLH 206
           ++ S +       +  +  ++A     D L        + D +GR  
Sbjct: 619 YLTSAVRRQPFCVVLLDEVEKAHPAVHDALLGVLGEGRLTDASGRFT 665


>gi|157876329|ref|XP_001686523.1| dynein heavy chain [Leishmania major strain Friedlin]
 gi|68129597|emb|CAJ08142.1| putative dynein heavy chain [Leishmania major strain Friedlin]
          Length = 4241

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 71/178 (39%), Gaps = 16/178 (8%)

Query: 21   FASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDI--GVAVAQKIVEELLTKRYAK 77
                S  L + +  + +S    DD V   + + L+ SDI  GV V +  ++    +   +
Sbjct: 1859 LQKESEILIKSLRVNTLSKLTFDDAV---IFNTLL-SDIFPGVPVLE--IDYQKLRPAIE 1912

Query: 78   DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
            +   +  L  V   I K+L        ++   +   +++VG +G GK+T++  L + +  
Sbjct: 1913 ESIKELRLQVVETQIQKILQ------LYEALQQRMGVVLVGPSGSGKSTLMKVLRRALQQ 1966

Query: 138  AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
             G KV L   +  ++   +QL    D  + ++    +   A  +  E          D
Sbjct: 1967 LGTKVPLYVVNP-KALPREQLLGHMDPDTREWFDGVLTDAARKVVKEEASARSWIVCD 2023


>gi|54025361|ref|YP_119603.1| bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate
           kinase protein [Nocardia farcinica IFM 10152]
 gi|54016869|dbj|BAD58239.1| putative ATP sulfurylase large subunit [Nocardia farcinica IFM
           10152]
          Length = 641

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            +P V+   G++G GK+TV   + K++ + G    L  GD  R  
Sbjct: 458 QQPAVVWFTGLSGAGKSTVANLVEKRLHEQGYHTYLLDGDNVRHG 502


>gi|254230051|ref|ZP_04923450.1| adenylylsulfate kinase [Vibrio sp. Ex25]
 gi|262392478|ref|YP_003284332.1| adenylylsulfate kinase [Vibrio sp. Ex25]
 gi|151937439|gb|EDN56298.1| adenylylsulfate kinase [Vibrio sp. Ex25]
 gi|262336072|gb|ACY49867.1| adenylylsulfate kinase [Vibrio sp. Ex25]
          Length = 205

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 99  LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           + K F  +    +P V+   G++G GK+TV G L  +++  G    L  GD  R  
Sbjct: 19  VDKQFRAELKKQKPAVLWFTGLSGAGKSTVAGALENRLAALGYHTYLLDGDNVRHG 74


>gi|322514940|ref|ZP_08067954.1| chaperone protein ClpB [Actinobacillus ureae ATCC 25976]
 gi|322119090|gb|EFX91247.1| chaperone protein ClpB [Actinobacillus ureae ATCC 25976]
          Length = 864

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 81/207 (39%), Gaps = 17/207 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++      I  L K  A    + +EG  + +   ++ D   EE+ ++L ++  G+ V+
Sbjct: 501 EKMSELQYGKIPALEKQLAEAVKREEEGGENQLLRTKVTD---EEIAEVLSKA-TGIPVS 556

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNG 121
            K++E    K    +  +   +   +E +  +   + +        +RP    L +G  G
Sbjct: 557 -KMMEGEKEKLLRMEDVLHSRVIGQNEAVEAVANSIRRSRAGLSDPNRPIGSFLFLGPTG 615

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKT +   L+  + D    +        R    + ++  +           +G +    
Sbjct: 616 VGKTELCKTLANFLFDDPDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY 668

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             EA ++   +   V+++D   + H +
Sbjct: 669 LTEAVRR---RPYSVVLLDEVEKAHPD 692


>gi|322831209|ref|YP_004211236.1| ATP-dependent metalloprotease FtsH [Rahnella sp. Y9602]
 gi|321166410|gb|ADW72109.1| ATP-dependent metalloprotease FtsH [Rahnella sp. Y9602]
          Length = 650

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVSELVDYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|317498372|ref|ZP_07956667.1| phosphoribulokinase/Uridine kinase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894266|gb|EFV16453.1| phosphoribulokinase/Uridine kinase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 550

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +GV     + +E+        + +Q  L +      K+L  ++       S    +IL+ 
Sbjct: 241 MGVDTVGALNDEITHGNINHLILLQEGLQE------KLLADIADEI---VSKNKRIILIA 291

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           G +  GKTT   +LS ++  AGL     + D +
Sbjct: 292 GPSSSGKTTFSHRLSIQLEIAGLTPHPVSMDDY 324


>gi|312385855|gb|EFR30252.1| hypothetical protein AND_00266 [Anopheles darlingi]
          Length = 269

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGD 148
           + +     S       ++ P  ++V+G+ G GKTT + KL+  + +  G    L   D
Sbjct: 1   MAEAATASSSQAKSAPTNSPVCLIVLGMAGSGKTTFVKKLAQHRHAKTGTLPYLINLD 58


>gi|308050590|ref|YP_003914156.1| membrane protease FtsH catalytic subunit [Ferrimonas balearica DSM
           9799]
 gi|307632780|gb|ADN77082.1| membrane protease FtsH catalytic subunit [Ferrimonas balearica DSM
           9799]
          Length = 650

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    +   L   SK F       P  +L+VG  G GK
Sbjct: 142 RLMSEDQIKTTFADVAGCDEAKEEVAELVDYLRDPSK-FQKLGGKIPTGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 201 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFDQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKSAPCIIF-IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|307256034|ref|ZP_07537822.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306865456|gb|EFM97351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 500

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 13/134 (9%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGV-GKTTVIGKLSKKMSDAGLKVMLAAG--- 147
           + ++L  ++  F  + S +     +VGV G  GKTT    L++  +  G K  +      
Sbjct: 97  LARILSEIAGAFYANPSEKLT---LVGVTGTNGKTTSAQLLAQWHNLLGGKSAVMGTIGN 153

Query: 148 ----DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDT 201
                   +A      I   R  ADFV   +   A  ++     Q  A+A   D+ +   
Sbjct: 154 GLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYRAEALSYDLAVFTN 213

Query: 202 AGRLHNNSILMAGI 215
             R H +       
Sbjct: 214 LSRDHLDYHKTMEE 227


>gi|298246636|ref|ZP_06970441.1| cobalamin synthesis protein P47K [Ktedonobacter racemifer DSM
           44963]
 gi|297549295|gb|EFH83161.1| cobalamin synthesis protein P47K [Ktedonobacter racemifer DSM
           44963]
          Length = 364

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 13/166 (7%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA---GDTFRSAA--IDQLKIW 161
              R  V ++VG  G GKTTV+G++     + GLK  L     GD         D+    
Sbjct: 9   ADQRIPVYVLVGFLGSGKTTVLGEMLGWCVEQGLKPGLIINEFGDVSIDGEALRDEGLAM 68

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            + T     C+       A+     + A+   VD++ ++  G      +L       +  
Sbjct: 69  TELTDGCVCCTAGEELVPAI----LEMARRPDVDLVFLEATGLADPADMLDELTDPFL-- 122

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            +++      SV+           L         A    LIM K D
Sbjct: 123 WQKVTVGGVISVMDSKRIIELAGNLELARRQIEFA--DALIMNKCD 166


>gi|296455059|ref|YP_003662203.1| ABC transporter permease [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184491|gb|ADH01373.1| ABC transporter permease [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 609

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 59/184 (32%), Gaps = 27/184 (14%)

Query: 100 SKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSA 153
            KP   DFS        + +VG  G GKTT++  L +    +G  + +   DT    R  
Sbjct: 382 GKPIINDFSASVSAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWN 441

Query: 154 AIDQLKIWADRT---------SADFVCSEIGSDAAALAYEAFK-----QAQAKKVDVLII 199
             DQ  +    T         +  +    + +     A +A       ++     D ++ 
Sbjct: 442 VHDQFSMVLQDTWVFRGTVRENIAYSKPGVTNKQIEDACKAVGLDHFIRSLPDGYDTVLD 501

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D        S L  G  +++ + + +   AP  +L    ++        ++         
Sbjct: 502 D-------KSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVG 554

Query: 260 GLIM 263
               
Sbjct: 555 RTSF 558


>gi|229592643|ref|YP_002874762.1| cell division protein [Pseudomonas fluorescens SBW25]
 gi|229364509|emb|CAY52361.1| cell division protein [Pseudomonas fluorescens SBW25]
          Length = 639

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 145 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 203

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 204 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 244

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 245 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 303

Query: 242 GQNALR 247
             + L 
Sbjct: 304 RPDVLD 309


>gi|188588618|ref|YP_001920596.1| ribosomal biogenesis GTPase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251780773|ref|ZP_04823693.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|188498899|gb|ACD52035.1| GTP-binding protein [Clostridium botulinum E3 str. Alaska E43]
 gi|243085088|gb|EES50978.1| GTP-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 285

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-----IL 115
            V +  ++ L TK   + + V  +  D  + I  ML+ L K  +     +  V     ++
Sbjct: 66  KVTKDWIKHL-TKDEVRVLEVNCLKGDGLKAIKPMLLSLLKEKHDRLRAKGMVNITTRVM 124

Query: 116 VVGVNGVGKTTVIGKLSK 133
           VVG+  VGK+T I K+++
Sbjct: 125 VVGIPNVGKSTFINKMAR 142


>gi|167829562|ref|ZP_02461033.1| SciG protein [Burkholderia pseudomallei 9]
          Length = 716

 Score = 37.5 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ E L  +   +       +  ++E I      L  P       +PH V L+ G +G
Sbjct: 406 VLKLAETLAERVVGQ----PHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 455

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L++ +       +      F+ A           T +    +  G     
Sbjct: 456 VGKTETALA-LAEMLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 504

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +  + +   V+++D   + H +             +   +       ++V+ + 
Sbjct: 505 QGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLT 564

Query: 238 DATTGQNALR 247
                +  ++
Sbjct: 565 SNVGSERVMQ 574


>gi|295695142|ref|YP_003588380.1| LAO/AO transport system ATPase [Bacillus tusciae DSM 2912]
 gi|295410744|gb|ADG05236.1| LAO/AO transport system ATPase [Bacillus tusciae DSM 2912]
          Length = 312

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                 R HV+ + G  G GK+T+  KLSK+ ++AG +V +   D
Sbjct: 37  TASRQGRAHVVGITGPPGAGKSTLTAKLSKRWAEAGREVGIVCVD 81


>gi|227529614|ref|ZP_03959663.1| ATPase [Lactobacillus vaginalis ATCC 49540]
 gi|227350404|gb|EEJ40695.1| ATPase [Lactobacillus vaginalis ATCC 49540]
          Length = 609

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            PL + FN   +    ++ +VG  G GKTT+I  L +     G K+ L   +T RS + D
Sbjct: 381 EPLIENFNLK-AMPNEMVAIVGPTGAGKTTIINLLERFYEVKGGKIYLDGQNT-RSMSRD 438

Query: 157 QLKIWADRTSAD-------FVCSEIGSDAAALAYEAFKQAQAKKVD 195
           +L+        D          +       A A E ++ A+    D
Sbjct: 439 ELRSHIAMVLQDTWLFTGTIFDNIKYGREDASADEVYQAARLAHAD 484


>gi|269798423|ref|YP_003312323.1| ABC transporter [Veillonella parvula DSM 2008]
 gi|269095052|gb|ACZ25043.1| ABC transporter related protein [Veillonella parvula DSM 2008]
          Length = 599

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS-HRP 111
           L+ + I + + +  +E+   +  + +  V+R +      + +     +   N  F+  R 
Sbjct: 321 LLDA-IDMDLDESAIEKERKRLLSPNEMVERPVEISVSHLVRTFGDFTAVANTSFTVQRG 379

Query: 112 HVILVVGVNGVGKTTVI 128
            V  ++G NG GKTT  
Sbjct: 380 EVFGLLGPNGAGKTTTF 396


>gi|407479|emb|CAA53054.1| TAP2 [Rattus norvegicus]
          Length = 703

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 15/113 (13%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +  +   +DVS                 P+ +   +   H   V  +VG NG GK+TV 
Sbjct: 463 RVEGRVEFQDVSFSYPSRPEK--------PVLQGLTFTL-HPGKVTALVGPNGSGKSTVA 513

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
             L       G KV+L          + Q            V  E    + ++
Sbjct: 514 ALLQNLYQPTGGKVLLDG------EPLVQYDHHYLHRQVVLVGQEPVLFSGSV 560


>gi|407481|emb|CAA53055.1| TAP2 [Rattus norvegicus]
          Length = 703

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 15/113 (13%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +  +   +DVS                 P+ +   +   H   V  +VG NG GK+TV 
Sbjct: 463 RVEGRVEFQDVSFSYPSRPEK--------PVLQGLTFTL-HPGKVTALVGPNGSGKSTVA 513

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
             L       G KV+L          + Q            V  E    + ++
Sbjct: 514 ALLQNLYQPTGGKVLLDG------EPLVQYDHHYLHRQVVLVGQEPVLFSGSV 560


>gi|23464779|ref|NP_695382.1| ABC transporter permease [Bifidobacterium longum NCC2705]
 gi|23325355|gb|AAN24018.1| probable permease protein of ABC transporter system
           [Bifidobacterium longum NCC2705]
          Length = 609

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 59/184 (32%), Gaps = 27/184 (14%)

Query: 100 SKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSA 153
            KP   DFS        + +VG  G GKTT++  L +    +G  + +   DT    R  
Sbjct: 382 GKPIINDFSASVSAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWN 441

Query: 154 AIDQLKIWADRT---------SADFVCSEIGSDAAALAYEAFK-----QAQAKKVDVLII 199
             DQ  +    T         +  +    + +     A +A       ++     D ++ 
Sbjct: 442 VHDQFSMVLQDTWVFRGTVRENIAYSKPGVTNKQIEDACKAVGLDHFIRSLPDGYDTVLD 501

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D        S L  G  +++ + + +   AP  +L    ++        ++         
Sbjct: 502 D-------KSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVG 554

Query: 260 GLIM 263
               
Sbjct: 555 RTSF 558


>gi|158262055|ref|NP_114445.2| antigen peptide transporter 2 [Rattus norvegicus]
 gi|46237563|emb|CAE83943.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Rattus
           norvegicus]
 gi|60688319|gb|AAH91140.1| Tap2 protein [Rattus norvegicus]
 gi|149043354|gb|EDL96805.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP),
           isoform CRA_a [Rattus norvegicus]
          Length = 703

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 15/113 (13%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +  +   +DVS                 P+ +   +   H   V  +VG NG GK+TV 
Sbjct: 463 RVEGRVEFQDVSFSYPSRPEK--------PVLQGLTFTL-HPGKVTALVGPNGSGKSTVA 513

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
             L       G KV+L          + Q            V  E    + ++
Sbjct: 514 ALLQNLYQPTGGKVLLDG------EPLVQYDHHYLHRQVVLVGQEPVLFSGSV 560


>gi|16126722|ref|NP_421286.1| arginine/ornithine transport system ATPase [Caulobacter crescentus
           CB15]
 gi|221235504|ref|YP_002517941.1| arginine/ornithine transport system ATPase [Caulobacter crescentus
           NA1000]
 gi|13638621|sp|P37895|Y2483_CAUCR RecName: Full=Putative GTPase CC_2483
 gi|13424036|gb|AAK24454.1| LAO transporter binding protein kinase, putative [Caulobacter
           crescentus CB15]
 gi|220964677|gb|ACL96033.1| LAO/AO transport system kinase [Caulobacter crescentus NA1000]
          Length = 326

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAA-------- 154
              + R   I + GV G GK+T I +    + +AG +V + A D    R           
Sbjct: 48  MPLTGRAQRIGITGVPGAGKSTTIERFGCNLVEAGHRVAVLAVDPSSGRHGGSILGDKTR 107

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           ++QL + A+               A    EA    +A   DV+II+T G   + +
Sbjct: 108 MEQLSVQANAFIRPSPSGGALGGVARKTREAMLLCEAAGFDVVIIETVGVGQSET 162


>gi|150016963|ref|YP_001309217.1| multidrug ABC transporter [Clostridium beijerinckii NCIMB 8052]
 gi|149903428|gb|ABR34261.1| ABC transporter, transmembrane region [Clostridium beijerinckii
           NCIMB 8052]
          Length = 642

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 19/106 (17%)

Query: 44  GVREELEDLLIRSDIGVAVAQ-KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
            + +E+E++             KI+E    +    +V       +          PL + 
Sbjct: 372 ELLDEVEEI-------PDATDAKIIEFPKGEVKFDNVDFSYKPEE----------PLIED 414

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            N D   + H I +VG  G GKTT++  L +       K+M+   D
Sbjct: 415 MNLDV-KKGHTIAIVGPTGAGKTTLVNLLMRFYEINSGKIMIDGVD 459


>gi|113972261|ref|YP_736054.1| chromosome segregation ATPase [Shewanella sp. MR-4]
 gi|114049510|ref|YP_740060.1| chromosome segregation ATPase [Shewanella sp. MR-7]
 gi|113886945|gb|ABI40997.1| chromosome segregation ATPase [Shewanella sp. MR-4]
 gi|113890952|gb|ABI45003.1| chromosome segregation ATPase [Shewanella sp. MR-7]
          Length = 262

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 26/140 (18%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  ++    KV+L   D                     + S +      
Sbjct: 13  GVGKTTTCVNLAASLAATKRKVLLIDLD---------------PQGNATMGSGVDKYEVE 57

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
                    +    D+++ DT G+      L+A  G +     +L       V       
Sbjct: 58  NTAYELLVEEKPFDDIVVKDTTGKY----DLIASNGDVTAAEIKLMEFFAREVRL----- 108

Query: 241 TGQNALRQVEMFHAVAGTTG 260
             +NAL  ++  +       
Sbjct: 109 --RNALAPIKDQYDYIFIDC 126


>gi|150389944|ref|YP_001319993.1| ABC transporter related [Alkaliphilus metalliredigens QYMF]
 gi|149949806|gb|ABR48334.1| ABC transporter related [Alkaliphilus metalliredigens QYMF]
          Length = 626

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIH--------KMLMPLSKPFNWDFSHRP 111
           VA A+++ E L       D+ V + +      +         K   PL +  N D     
Sbjct: 348 VASAERVFELLDETEEIPDIKVSKHVKMPKGEVAFRNVKFGYKEDEPLMENMNIDVKPG- 406

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             I +VG  G GKTT++  L +    +  K+ +   D
Sbjct: 407 QTIAIVGPTGAGKTTLVNLLMRFYEISEGKITVDGVD 443


>gi|330882537|gb|EGH16686.1| general secretory pathway protein E [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 538

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 317 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 374


>gi|307822048|ref|ZP_07652280.1| Metal-dependent hydrolase of the beta-lactamase superfamily
           III-like protein [Methylobacter tundripaludum SV96]
 gi|307736614|gb|EFO07459.1| Metal-dependent hydrolase of the beta-lactamase superfamily
           III-like protein [Methylobacter tundripaludum SV96]
          Length = 649

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           IL+ G  G+GK+T+  +L++  S+ GL     A D
Sbjct: 28  ILLFGETGIGKSTLTAELARIFSERGLSCFCIAAD 62


>gi|224142413|ref|XP_002324552.1| ABC transporter family protein [Populus trichocarpa]
 gi|222865986|gb|EEF03117.1| ABC transporter family protein [Populus trichocarpa]
          Length = 229

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 30/211 (14%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           ++ G NG GK+T +  L+     +  +++    D   S    Q K+  +  S      E 
Sbjct: 40  VLTGSNGSGKSTFLRMLAGFSKPSAGQILWNGHDVTESGVFHQYKLQLNWLSLKDAIKEK 99

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTA--GRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
            +    + +    + + +   +  I+    GRL  +   M  +G+  R+           
Sbjct: 100 FTVLDNVQWFELLEGK-QGNSLPAIELMGLGRLAKDKARMLSMGQRKRLQLARLLAIDRP 158

Query: 233 VLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVG 292
           +  + + +   +                 I+ K     +GG +    V   +P+      
Sbjct: 159 IWLLDEPSVALDD--------DGVRLLEYIIAK--HRKKGGIVF---VATHLPI------ 199

Query: 293 EGIND-----LEPFVAKDFSAVITGCLDYGE 318
             I D     L P   +     +   LD  E
Sbjct: 200 -NIEDAMYLRLPPRFPRRM--TLVDMLDRAE 227


>gi|189460531|ref|ZP_03009316.1| hypothetical protein BACCOP_01172 [Bacteroides coprocola DSM 17136]
 gi|189432775|gb|EDV01760.1| hypothetical protein BACCOP_01172 [Bacteroides coprocola DSM 17136]
          Length = 607

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 8/121 (6%)

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
               Q+K   + T+  F+  +      A+   A    + K + VL+ID   RL + S   
Sbjct: 398 GEYKQVKQHLE-TNFFFISPKSDFRVDAILERAKFLVRRKGIKVLVIDPYNRLEDESEGK 456

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVL------DATTGQNALRQVEMFHAVAGTTGLIMTKM 266
                + R+L +L   A    + V+           ++   ++   + ++G +     K 
Sbjct: 457 NETKYISRLLDKLTNFAQQHDVLVILMAHPTKMQKNKDGEPEIPTLYDISG-SANFYNKA 515

Query: 267 D 267
           D
Sbjct: 516 D 516


>gi|182681322|ref|YP_001829482.1| general secretory pathway protein E [Xylella fastidiosa M23]
 gi|182631432|gb|ACB92208.1| general secretory pathway protein E [Xylella fastidiosa M23]
          Length = 566

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 111 PHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLK 159
           PH IL+V G  G GKTT +  +  +++  G+K++       ++   I+Q++
Sbjct: 316 PHGILLVTGPTGSGKTTTLYTVLNRLNTTGVKIITVEDPVEYQIEGINQIQ 366


>gi|104780021|ref|YP_606519.1| ATP-dependent metalloprotease FtsH [Pseudomonas entomophila L48]
 gi|95109008|emb|CAK13704.1| ATP-dependent metalloprotease FtsH [Pseudomonas entomophila L48]
          Length = 635

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 201 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|71735772|ref|YP_275240.1| general secretion pathway protein GspE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556325|gb|AAZ35536.1| general secretion pathway protein GspE [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 585

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 328 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 385


>gi|85707290|ref|ZP_01038374.1| RepA partitioning protein/ATPase, ParA type [Roseovarius sp. 217]
 gi|85668171|gb|EAQ23048.1| RepA partitioning protein/ATPase, ParA type [Roseovarius sp. 217]
          Length = 397

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 30/206 (14%)

Query: 85  LYDVSELIHKMLMPLSKPFNW-------DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           L D+ E+ H +     KP  +       D      V+   G  G GKTT    L+++++ 
Sbjct: 82  LDDIWEIRHALEANAKKPGTYVPGRRAGDELQIVSVVNFKG--GSGKTTTSAHLAQRLAL 139

Query: 138 AGLKVMLAAGDTF-RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
            G +V+    D     +A+  ++   D      +   +  D      +  ++   + +D+
Sbjct: 140 KGYRVLAIDLDPQASLSALHGIQPELDLMEGGTLYDAVRYDEPVPISDVIRKTYIRGLDL 199

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           +          N  LM    +    ++R    A             ++AL  VE  + V 
Sbjct: 200 I--------PGNLELMEFEHETPAAIQRGGARAFF--------ARVRDALDSVEADYDVV 243

Query: 257 GTTG----LIMTKMDGTARGGGLIPI 278
                     +T    +A  G L+ +
Sbjct: 244 VIDCPPQLGFLTMSALSASSGVLVTV 269


>gi|115350718|ref|YP_772557.1| adenylyl-sulfate kinase [Burkholderia ambifaria AMMD]
 gi|123322713|sp|Q0BI00|CYSC_BURCM RecName: Full=Adenylyl-sulfate kinase; AltName: Full=APS kinase;
           AltName: Full=ATP adenosine-5'-phosphosulfate
           3'-phosphotransferase; AltName:
           Full=Adenosine-5'-phosphosulfate kinase
 gi|115280706|gb|ABI86223.1| adenylylsulfate kinase [Burkholderia ambifaria AMMD]
          Length = 181

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            +  V+ + GV+G GK+T+   L +++   GL+  L  GDT R+ 
Sbjct: 4   KKVFVVWLTGVSGAGKSTLANLLKQQLDARGLRTYLLDGDTLRNG 48


>gi|71902057|ref|ZP_00684098.1| type II secretion system protein E:General secretory system II,
           protein E, N-terminal [Xylella fastidiosa Ann-1]
 gi|71728185|gb|EAO30375.1| type II secretion system protein E:General secretory system II,
           protein E, N-terminal [Xylella fastidiosa Ann-1]
          Length = 566

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 111 PHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLK 159
           PH IL+V G  G GKTT +  +  +++  G+K++       ++   I+Q++
Sbjct: 316 PHGILLVTGPTGSGKTTTLYTVLNRLNTTGVKIITVEDPVEYQIEGINQIQ 366


>gi|67926040|ref|ZP_00519299.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:Protein of unknown function DUF450:DEAD/DEAH box
           helicase, N-terminal [Crocosphaera watsonii WH 8501]
 gi|67852114|gb|EAM47614.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:Protein of unknown function DUF450:DEAD/DEAH box
           helicase, N-terminal [Crocosphaera watsonii WH 8501]
          Length = 835

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 83/282 (29%), Gaps = 57/282 (20%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELI--HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +E L+ +R  +    +  L  V+  I          +     FS      L+V   G GK
Sbjct: 91  LERLIFRRKNRK---KLHLVPVNNDIVNRSYQTEAIRQITEAFSQNIRKALLVMATGTGK 147

Query: 125 T-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL-----KIWADRTSADFVCSEIGSDA 178
           T T I  +        +  +L   D  R A + Q               D   S+     
Sbjct: 148 TRTSIALIDLLKRANWVNRVLFLAD--REALVTQAFRAFKSHLPQANIIDLTKSKTSQAI 205

Query: 179 AA---------------LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
            A                  +  +       D++I+D A                 R + 
Sbjct: 206 TANIVVSTYPTMFNRLNDMGDKERMFGVGHFDLIIVDEA----------------HRSIY 249

Query: 224 RLDPHAPH--SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT---KMDGTARGGGLIPI 278
           +           L V    T +N +      + +      + T   ++D   + G L+P 
Sbjct: 250 QKYQTLFDYFDGLLVGLTATPRNEVH--RDTYRIFELESGVPTFAYELDDAIKDGYLVP- 306

Query: 279 VVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCLDYGEEK 320
                +P  FL  G    +L P   +++ A       Y EEK
Sbjct: 307 PQGINVPFKFLRTGVKYTELSPEEQEEYEAKF-----YDEEK 343


>gi|308049196|ref|YP_003912762.1| ABC transporter [Ferrimonas balearica DSM 9799]
 gi|307631386|gb|ADN75688.1| ABC transporter related protein [Ferrimonas balearica DSM 9799]
          Length = 276

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V+ +VG NG GKTT +  LS  +   G  +++   D  R+ 
Sbjct: 49  QVVGLVGPNGAGKTTTLRLLSGVLKPDGGSILVEGEDLHRNG 90


>gi|296533362|ref|ZP_06895962.1| plasmid partitioning protein RepA [Roseomonas cervicalis ATCC
           49957]
 gi|296266317|gb|EFH12342.1| plasmid partitioning protein RepA [Roseomonas cervicalis ATCC
           49957]
          Length = 399

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVN---GVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +  +L   ++          H+ ++   N   G GKTT    L++ ++  G +V+    D
Sbjct: 91  LRGLLKGKNRQAPPRRQEGEHLQVIAVANFKGGSGKTTTAAHLAQYLAFQGHRVLALDLD 150


>gi|237730243|ref|ZP_04560724.1| ycgA [Citrobacter sp. 30_2]
 gi|226905782|gb|EEH91700.1| ycgA [Citrobacter sp. 30_2]
          Length = 585

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 25/159 (15%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ++ +G  GVGKTTV   ++  ++  G KV L   D    AA     +     +      +
Sbjct: 331 VMTMGKGGVGKTTVAASVAVSLAKRGHKVHLTTSD---PAAHLSYTLDGSLPNLQVSRID 387

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-------RVLKRLD 226
              +         +           +D  G       L +   + I       R++K  D
Sbjct: 388 PKVETERYRRFVLENQGKG------LDAEGLAVLEEDLRSPCTEEIAVFQAFSRIIKEAD 441

Query: 227 PHAPH-------SVLQVLDAT--TGQNALRQVEMFHAVA 256
            H            L +LDAT    +  +RQ+   H   
Sbjct: 442 DHFVIMDTAPTGHTLLLLDATGAYHREMVRQMGQTHDHV 480


>gi|183220685|ref|YP_001838681.1| recombination factor protein RarA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910786|ref|YP_001962341.1| recombination factor protein RarA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775462|gb|ABZ93763.1| helicase-like ATPase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779107|gb|ABZ97405.1| Putative ATPase involved in DNA replication [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 419

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 37/135 (27%), Gaps = 3/135 (2%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P  IL  G  G GKTT+   L++        +            + ++     R     
Sbjct: 40  KPTSILFYGPPGTGKTTLAHLLAESWKLEKRYLSCVTSGVK---EVREVLEEGKRLGTIV 96

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
           +  +     ++   +A   A  +   +LI  T                ++  L  L    
Sbjct: 97  LFLDEIHRFSSSQQDALLSAVEEGEIILIAATTENPSFRVNKALLSRMLVYRLTTLTEEE 156

Query: 230 PHSVLQVLDATTGQN 244
              +          N
Sbjct: 157 EDQIFLSCLEKQNTN 171


>gi|149913429|ref|ZP_01901962.1| arginine/ornithine transport system ATPase [Roseobacter sp.
           AzwK-3b]
 gi|149812549|gb|EDM72378.1| arginine/ornithine transport system ATPase [Roseobacter sp.
           AzwK-3b]
          Length = 335

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 76/208 (36%), Gaps = 44/208 (21%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI---GKLSKK 134
           + S         +LI  +     +      S  P         GVGK+T I   GK+   
Sbjct: 35  ESSRADHREQAVQLIEHLKTANRQAIRIGLSGTP---------GVGKSTFIESFGKM--- 82

Query: 135 MSDAGLKVMLAAGD--TFRSAAI-----DQLKIWADRTSADFVCSEIGSDAAALAY---E 184
           ++  GLKV + A D  + RS         +++  +   +A    S   S    +A    E
Sbjct: 83  LTGQGLKVAVLAVDPSSARSGGSILGDKTRMEELSRDPNAFIRPSPSRSHLGGVARRTRE 142

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           A    +A   DV++I+T G   + +++                     V  +L A  G +
Sbjct: 143 AVSLCEAAGFDVVLIETVGVGQSETVVAEMS----------------DVFVLLLAPAGGD 186

Query: 245 ALRQVEM-FHAVAGTTGLIMTKMDGTAR 271
            L+ V+     +A    +++ K DG  +
Sbjct: 187 ELQGVKRGIMEIADI--ILVNKADGDLK 212


>gi|153855387|ref|ZP_01996536.1| hypothetical protein DORLON_02550 [Dorea longicatena DSM 13814]
 gi|149752207|gb|EDM62138.1| hypothetical protein DORLON_02550 [Dorea longicatena DSM 13814]
          Length = 518

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  ++L++  +L+     PLSKP N+    R   I +VG NG+GKTT
Sbjct: 320 TPGKMLFETHDLVTGYDEPLSKPLNFSME-RGQKIALVGTNGIGKTT 365


>gi|139439256|ref|ZP_01772698.1| Hypothetical protein COLAER_01712 [Collinsella aerofaciens ATCC
           25986]
 gi|133775280|gb|EBA39100.1| Hypothetical protein COLAER_01712 [Collinsella aerofaciens ATCC
           25986]
          Length = 671

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           I VVG  G GKTT+I  L +     G ++ L   DT R
Sbjct: 463 IAVVGTTGAGKTTLINLLMRFYEIDGGRITLDGVDTSR 500


>gi|146284648|ref|YP_001165601.1| cobyrinic acid a,c-diamide synthase [Enterobacter sp. 638]
 gi|145320781|gb|ABP62927.1| plasmid segregation oscillating ATPase ParF [Enterobacter sp. 638]
          Length = 213

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I+V+G    GVGK+T+   L+  +   G +V++   D       DQ  +     +     
Sbjct: 7   IIVLGSQKGGVGKSTLAVSLAAYLITLGKRVLIVDAD-------DQKSVLTWYNNRPENL 59

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             +    A    +A  +   K  D +I D AGR    
Sbjct: 60  PHMPVTGATGNIKAMLKEHEKSYDFVIADCAGRDSAE 96


>gi|118471590|ref|YP_887475.1| arginine/ornithine transporter ATPase [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172877|gb|ABK73773.1| LAO/AO transport system ATPase [Mycobacterium smegmatis str. MC2
           155]
          Length = 325

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 24/166 (14%)

Query: 58  IGV-AVAQKIVE----ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           + V  +AQ I +     L       + +         +L+  ++       +   +    
Sbjct: 4   VNVHELAQSIRDGDRSALARAITLVESTRADHREQAQQLLLDLMPEAGSAMHVGIT---- 59

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAA--------IDQLKIWA 162
                GV GVGK+T I  L   + +AG +V + A D  + R+          + +L +  
Sbjct: 60  -----GVPGVGKSTTIEALGMHLIEAGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHP 114

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           D        S      A    E     +A   DV++++T G   + 
Sbjct: 115 DAYIRPSPTSGTLGGVAKATRETIVLLEAAGYDVILVETVGVGQSE 160


>gi|158320145|ref|YP_001512652.1| arsenite-activated ATPase ArsA [Alkaliphilus oremlandii OhILAs]
 gi|158140344|gb|ABW18656.1| arsenite-activated ATPase ArsA [Alkaliphilus oremlandii OhILAs]
          Length = 582

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E + +   + ++     + +V ++       L+      +     VI  +G  GVGKTT
Sbjct: 288 IENVRSFFNSDNIKHSTEVLNVDKI-----PNLNDVIEDLYKSDKKVIFTMGKGGVGKTT 342

Query: 127 VIGKLSKKMSDAGLKVMLAAGD 148
           +   ++ +++  G KV L   D
Sbjct: 343 IAATVALELAKKGKKVHLTTTD 364


>gi|77641023|gb|ABB00383.1| I2 [Solanum lycopersicum]
          Length = 230

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG------KLSKKMSDAGL 140
           D+ ELI ++L   +         +P V+ +VG+ GVGKTT+        K+         
Sbjct: 8   DIEELIDRLLSEDASG------KKPTVVPIVGMGGVGKTTLAKVVYNDEKVKDYFDLRAW 61

Query: 141 KVMLAAGDTFRSA 153
             +  A D FR  
Sbjct: 62  FCVSEAYDAFRIT 74


>gi|71274719|ref|ZP_00651007.1| type II secretion system protein E:General secretory system II,
           protein E, N-terminal [Xylella fastidiosa Dixon]
 gi|71899600|ref|ZP_00681755.1| type II secretion system protein E:General secretory system II,
           protein E, N-terminal [Xylella fastidiosa Ann-1]
 gi|170730040|ref|YP_001775473.1| general secretory pathway protein E [Xylella fastidiosa M12]
 gi|71164451|gb|EAO14165.1| type II secretion system protein E:General secretory system II,
           protein E, N-terminal [Xylella fastidiosa Dixon]
 gi|71730642|gb|EAO32718.1| type II secretion system protein E:General secretory system II,
           protein E, N-terminal [Xylella fastidiosa Ann-1]
 gi|167964833|gb|ACA11843.1| general secretory pathway protein E [Xylella fastidiosa M12]
          Length = 566

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 111 PHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLK 159
           PH IL+V G  G GKTT +  +  +++  G+K++       ++   I+Q++
Sbjct: 316 PHGILLVTGPTGSGKTTTLYTVLNRLNTTGVKIITVEDPVEYQIEGINQIQ 366


>gi|329297266|ref|ZP_08254602.1| cobyrinic acid a,c-diamide synthase [Plautia stali symbiont]
          Length = 209

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 58/170 (34%), Gaps = 16/170 (9%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  +S  G   +L  GD     A         R +  +  S   +    
Sbjct: 11  GVGKTTTAVHLATMLSRTG-TALLIDGD---PQASAASWAAWRRDNPAYDPSPTTTCLTG 66

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHN--NSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            A     +A +   D +++D  GR      S L+     +I V       A  + L    
Sbjct: 67  KAIFNEGKALSGGFDNVVVDVGGRDATGLRSALLLAHRAIIPVGASNLDAAAMTDLL--- 123

Query: 239 ATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG-LIPIVVTHKIPVY 287
                  +     ++       +++T++D   +    ++  +    +PV 
Sbjct: 124 -----EVVELARDYNPELDV-KVLLTRVDSRTKDAADMLEFLTEQNLPVL 167


>gi|317968788|ref|ZP_07970178.1| ATPase [Synechococcus sp. CB0205]
          Length = 366

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 68/220 (30%), Gaps = 24/220 (10%)

Query: 102 PFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           P          VI V  G  GVGK+TV   L+  ++  GLKV L   D +   A   L +
Sbjct: 106 PERQAIPGVKQVIAVSSGKGGVGKSTVAVNLACALAQRGLKVGLLDADIYGPNAPTMLGV 165

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S        +               L+ID    +     ++ G   +IR
Sbjct: 166 ADQTPQVR--GSGNDQVLTPIESCGIAMVSMG----LLIDAHQPVIWRGPMLNG---IIR 216

Query: 221 VLKRLDPHAPHSVLQV-LDATTGQNALRQVEMFHAVAGTTGLIMTKMD-----GTARGGG 274
                       VL V L   TG   L             G+I+           AR G 
Sbjct: 217 QFLYQVEWGERDVLVVDLPPGTGDAQLSLA----QAVPMAGVIIVTTPQMVSLQDARRG- 271

Query: 275 LIPIVVTHKIPVYFLGVGEGINDLEPFVAKDFSAVITGCL 314
            + +     +PV  LGV E +    P  A +    + G  
Sbjct: 272 -LAMFQQLGVPV--LGVVENMTAFIPPDAPEKRYELFGSG 308


>gi|313898698|ref|ZP_07832233.1| ABC transporter, ATP-binding protein [Clostridium sp. HGF2]
 gi|312956582|gb|EFR38215.1| ABC transporter, ATP-binding protein [Clostridium sp. HGF2]
          Length = 593

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            PL K  N +      ++ VVG  G GKTT+I  L +     G  + +   D
Sbjct: 366 EPLMKDLNVEVKSG-QMVAVVGPTGAGKTTLINLLLRFYDVNGGSICIDGVD 416


>gi|307579772|gb|ADN63741.1| general secretory pathway protein E [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 562

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 111 PHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLK 159
           PH IL+V G  G GKTT +  +  +++  G+K++       ++   I+Q++
Sbjct: 312 PHGILLVTGPTGSGKTTTLYTVLNRLNTTGVKIITVEDPVEYQIEGINQIQ 362


>gi|296128556|ref|YP_003635806.1| urease accessory protein UreG [Cellulomonas flavigena DSM 20109]
 gi|296020371|gb|ADG73607.1| urease accessory protein UreG [Cellulomonas flavigena DSM 20109]
          Length = 279

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 29/169 (17%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--------RSAAIDQLKIW--ADRT 165
           V G  G GKT++I  L ++++D  +++ +   D +        R+A + ++      +  
Sbjct: 22  VAGPVGTGKTSLIALLCRELAD-DIEMGVVTNDIYTDEDAQILRAAGVLEVDRIRAVETG 80

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
           +              +A E  + A    +D++++++ G       L A            
Sbjct: 81  ACPHTAIRDDVTPNLIAVEDLE-ADHGPLDLVLVESGG-----DNLTATFS--------- 125

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGG 274
            P    + + VLD   G +  R+     A A    L++ K D     G 
Sbjct: 126 -PALVDAQIFVLDVAGGGDVARKGGPGIARADL--LVVNKTDLAPYVGV 171


>gi|213962449|ref|ZP_03390711.1| cell division protein FtsH [Capnocytophaga sputigena Capno]
 gi|213954775|gb|EEB66095.1| cell division protein FtsH [Capnocytophaga sputigena Capno]
          Length = 655

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 25/191 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A+   E+  T+   +DV+      +  + I   L    K +       P   L+VG  G 
Sbjct: 180 ARMFDEKKETRVTFQDVAGLEGAKEEVQEIVDFLKNPDK-YTSLGGKIPRGALLVGPPGT 238

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKT     L+K ++        +   +                  +       S    L 
Sbjct: 239 GKT----LLAKAVAGEAQVPFFSLSGS---------------DFVEMFVGVGASRVRDLF 279

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPHSVLQVLD 238
            +A +++ +    +  ID  GR    + +          + ++L  +D    H+ + VL 
Sbjct: 280 KQAKEKSPSIIF-IDEIDAIGRARGKNAMTGANDERENTLNQLLTEMDGFGSHTNVIVLA 338

Query: 239 ATTGQNALRQV 249
           AT   + L + 
Sbjct: 339 ATNRADILDKA 349


>gi|187735310|ref|YP_001877422.1| ATP-dependent helicase HrpA [Akkermansia muciniphila ATCC BAA-835]
 gi|187425362|gb|ACD04641.1| ATP-dependent helicase HrpA [Akkermansia muciniphila ATCC BAA-835]
          Length = 1231

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            VI+VVG  G GKTT + K++ +++    +  +      R AA    +  A+  + D
Sbjct: 25  QVIVVVGETGSGKTTQLPKMAMELAGE-ARGRVGCTQPRRLAAASVSRRVAEELNCD 80


>gi|165975471|ref|YP_001651064.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165875572|gb|ABY68620.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 500

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 13/134 (9%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGV-GKTTVIGKLSKKMSDAGLKVMLAAG--- 147
           + ++L  ++  F  + S +     +VGV G  GKTT    L++  +  G K  +      
Sbjct: 97  LARILSEIAGAFYANPSEKLT---LVGVTGTNGKTTSAQLLAQWHNLLGGKSAVMGTIGN 153

Query: 148 ----DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDT 201
                   +A      I   R  ADFV   +   A  ++     Q  A+A   D+ +   
Sbjct: 154 GLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYRAEALSYDLAVFTN 213

Query: 202 AGRLHNNSILMAGI 215
             R H +       
Sbjct: 214 LSRDHLDYHKTMEE 227


>gi|170289216|ref|YP_001739454.1| daunorubicin resistance ABC transporter ATPase subunit [Thermotoga
           sp. RQ2]
 gi|170176719|gb|ACB09771.1| daunorubicin resistance ABC transporter ATPase subunit [Thermotoga
           sp. RQ2]
          Length = 327

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 87  DVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
            V E + K            FS  +  V   +G NG GKTT I  L+  +     K  +A
Sbjct: 5   IVVENLVKKFGDFEAVKGVSFSVKKGEVFAFLGPNGAGKTTTIHMLTTLLKPTSGKAWVA 64

Query: 146 AGDT 149
             D 
Sbjct: 65  GHDV 68


>gi|38606517|emb|CAE05991.3| OSJNBa0016O02.1 [Oryza sativa Japonica Group]
          Length = 584

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 36/177 (20%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
             +  L ++S LI +++  L    N+    +  P  +L+VG  G GKT     L++ ++ 
Sbjct: 297 EAKEELVEISRLIIEVVSCLHGSLNYKKLGAKLPRGVLLVGPPGTGKT----LLARAVAG 352

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                          A I    + A     +       +    L  EA + A +    ++
Sbjct: 353 E--------------AGIPFFSVSASEF-VEVFVGRGAARVRDLFKEAKEAAPS----II 393

Query: 198 IID-------TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID       + GR  N+         + ++L  +D       + V+ AT    AL 
Sbjct: 394 FIDELDAVGGSRGRSFNDER----DQTLNQLLTEMDGFDSDMKVIVMAATNRPKALD 446


>gi|50291341|ref|XP_448103.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527414|emb|CAG61054.1| unnamed protein product [Candida glabrata]
          Length = 181

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/20 (60%), Positives = 16/20 (80%)

Query: 114 ILVVGVNGVGKTTVIGKLSK 133
           IL+VG++G GKTTV+ KL  
Sbjct: 20  ILMVGLDGAGKTTVLYKLKL 39


>gi|238783361|ref|ZP_04627385.1| hypothetical protein yberc0001_33390 [Yersinia bercovieri ATCC
           43970]
 gi|238715784|gb|EEQ07772.1| hypothetical protein yberc0001_33390 [Yersinia bercovieri ATCC
           43970]
          Length = 882

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 50/224 (22%)

Query: 53  LIRSDIGVAVAQKIVEE-----------------------LLTKRYAKDVSVQRVLYDVS 89
           L+  D+ V     ++ +                       L T+   +DV++  +   + 
Sbjct: 540 LLSLDVDVRTVATVIADWTGVPLSSLLKDEQTDLLQLENHLATRVVGQDVALVEMAQRLR 599

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGD 148
                 L   + P          V L+VG +GVGKT T +  L+  +      ++     
Sbjct: 600 AA-KTGLTSENGPLG--------VFLLVGPSGVGKTETALA-LADTLFGGEKSLITINMS 649

Query: 149 TFRSA-AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
            ++ A  + QLK              +G     +  EA    + +   V+++D   + H 
Sbjct: 650 EYQEAHTVSQLKGSP--------PGYVGYGQGGILTEAV---RKRPYSVVLLDEVEKAHA 698

Query: 208 NS-ILMAG--IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           +   L         +R  +  +    ++V+  + A  G + L Q
Sbjct: 699 DVINLFYQVFDRGFMRDGEGREIDFRNTVIL-MTANLGSDHLMQ 741


>gi|331010774|gb|EGH90830.1| general secretory pathway protein E [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 479

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 287 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 344


>gi|331695565|ref|YP_004331804.1| LAO/AO transport system ATPase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950254|gb|AEA23951.1| LAO/AO transport system ATPase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 326

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +L+T+    +     +L  + E     L  + +     ++ R  ++ + G  GVGK+T  
Sbjct: 9   DLVTRARRGEARAVALLISMVENDGPQLREVVEALT-PYTGRAQIVGLTGAPGVGKSTST 67

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIGSDAAAL 181
             L   +     +V + A D        A+      +   A                  L
Sbjct: 68  SALVAALRAKDRRVGVLAVDPSSPFSGGALLGDRVRMSEHATDDGVFIRSMATRGKLGGL 127

Query: 182 AY---EAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           A+   +A +   A   DV++I+T G   +   
Sbjct: 128 AWSTPQALRVLDAAGCDVVLIETVGVGQSEIE 159


>gi|308095375|ref|ZP_05905382.2| cell division protease FtsH [Vibrio parahaemolyticus Peru-466]
 gi|308086280|gb|EFO35975.1| cell division protease FtsH [Vibrio parahaemolyticus Peru-466]
          Length = 408

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 162 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 215

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 216 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 259

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 260 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 308


>gi|298487499|ref|ZP_07005543.1| General secretion pathway protein E [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158014|gb|EFH99090.1| General secretion pathway protein E [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 585

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 328 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 385


>gi|297848998|ref|XP_002892380.1| hypothetical protein ARALYDRAFT_470732 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338222|gb|EFH68639.1| hypothetical protein ARALYDRAFT_470732 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 743

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 65/226 (28%), Gaps = 50/226 (22%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV--- 170
           I++VG+   GKT    KL++ +   G          +R     +LK      SADF    
Sbjct: 344 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR-----RLK-HGVNMSADFFRAD 397

Query: 171 ---CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG----------- 216
                E  ++ AALA E       +   V I D          ++  +            
Sbjct: 398 NPEGVEARTEVAALAMEDMIAWMQEGGQVGIFDATNSTRVRRNMLMKMAEGKCKIIFLET 457

Query: 217 ---------KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
                    + IR+  +  P     +         ++ L   E  +        I   +D
Sbjct: 458 LCNDERIIERNIRLKIQQSPDYSEEMDFEAGVRDFRDRLANYEKVYEPVEEGSYI-KMID 516

Query: 268 GTARGGGLIPI-----------------VVTHKIPVYFLGVGEGIN 296
             +  GG I +                       P+     GE ++
Sbjct: 517 MVSGNGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESMD 562


>gi|238783521|ref|ZP_04627543.1| Cell division protease ftsH [Yersinia bercovieri ATCC 43970]
 gi|238715576|gb|EEQ07566.1| Cell division protease ftsH [Yersinia bercovieri ATCC 43970]
          Length = 619

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 122 EAKEEVSELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 177

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 178 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 221

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 222 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 267


>gi|168183402|ref|ZP_02618066.1| ABC transporter, ATP-binding protein [Clostridium botulinum Bf]
 gi|182673469|gb|EDT85430.1| ABC transporter, ATP-binding protein [Clostridium botulinum Bf]
          Length = 517

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L   +    +
Sbjct: 320 PENIIFNASNLIIGYNTPLSKPLNLKM-KRGQKIAITGANGIGKTTLIKTLLGLLKP--I 376

Query: 141 KVMLAAGDTFRSAAIDQ 157
              +   D  +    +Q
Sbjct: 377 NGEVTLSDYKKIGYFEQ 393


>gi|157822135|ref|NP_001099655.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Rattus
           norvegicus]
 gi|149038137|gb|EDL92497.1| DEAH (Asp-Glu-Ala-His) box polypeptide 38 (predicted), isoform
           CRA_a [Rattus norvegicus]
          Length = 1210

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 21/118 (17%)

Query: 58  IGVAVAQKIVEELLTK-------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           +     QK  + +  K          K +  QR    +  +  ++L  +           
Sbjct: 480 VDYRTEQKFADHMKEKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRD--------- 530

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTS 166
             +++VVG  G GKTT   +L++ +   G       G T   R AA+   K  ++   
Sbjct: 531 NSIVIVVGETGSGKTT---QLTQYLHQDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMG 585


>gi|146082368|ref|XP_001464492.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134068585|emb|CAM66881.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 214

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              P  I++ G  G GKTT+  KL+   
Sbjct: 48  RPTPLHIIITGPPGSGKTTLAAKLAAHY 75


>gi|167035710|ref|YP_001670941.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida GB-1]
 gi|166862198|gb|ABZ00606.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida GB-1]
          Length = 634

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 201 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|50120128|ref|YP_049295.1| putative GTP-binding protein YjiA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610654|emb|CAG74099.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 328

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 25/182 (13%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDT-------- 149
           +++P + D +   +V ++ G  G GKTT    L   ++   G K+ +   +         
Sbjct: 1   MTQPLSSDVTKPVYVTILTGFLGAGKTT---LLRHILNAEHGYKIAVIENEFGEVPIDNT 57

Query: 150 ---FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
               R+    Q+   ++        +E+      L  +          D +II+  G   
Sbjct: 58  LIGERA---SQITTLSNGCICCTKSNELADALLDLV-DGVDNGT-LDFDHVIIECTGMA- 111

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT-TGLIMTK 265
            +   +A       V+          ++ ++DA   Q  L Q  +  +  G    +++TK
Sbjct: 112 -DPGPVAQTFFSHEVICER--FVLDGIITLVDAAHAQQQLNQFTIAQSQIGYADRILLTK 168

Query: 266 MD 267
            D
Sbjct: 169 TD 170


>gi|50085895|ref|YP_047405.1| cell division protein [Acinetobacter sp. ADP1]
 gi|49531871|emb|CAG69583.1| cell division protein [Acinetobacter sp. ADP1]
          Length = 631

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 24/180 (13%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K   KDV+           I   L   +K F    +  P  +L+VG  G GKT     L+
Sbjct: 153 KVTFKDVAGCDEAKQEVVEIVDFLKDPAK-FKRLGATIPRGVLMVGPPGTGKT----LLA 207

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K ++        +   +                  +       S    +  +A + A   
Sbjct: 208 KAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKRHAPCI 252

Query: 193 KVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
              +  ID  GR                + ++L  +D    +  + V+ AT   + L + 
Sbjct: 253 IF-IDEIDAVGRHRGSGTGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRVDVLDKA 311


>gi|238793016|ref|ZP_04636645.1| Cell division protease ftsH [Yersinia intermedia ATCC 29909]
 gi|238727616|gb|EEQ19141.1| Cell division protease ftsH [Yersinia intermedia ATCC 29909]
          Length = 646

 Score = 37.5 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVDYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|330815360|ref|YP_004359065.1| ClpA/B type protease [Burkholderia gladioli BSR3]
 gi|327367753|gb|AEA59109.1| ClpA/B type protease [Burkholderia gladioli BSR3]
          Length = 891

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 64/194 (32%), Gaps = 25/194 (12%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +     +   L  +   +D      L  V++ +      L  P     +    V + VG 
Sbjct: 580 IETVMNLNALLGARVIGQD----HALDAVAQRVRTATAGLEDP-----NKPRGVFMFVGP 630

Query: 120 NGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVCSEIGSD 177
           +GVGKT T +  L+  +     K++      ++ A ++  LK            S  G  
Sbjct: 631 SGVGKTETALA-LADVLYGGERKMVTINMSEYQEAHSVSGLK-----------GSPPGYV 678

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH--SVLQ 235
                    +  +     V+++D   + H + + M         +   +       + L 
Sbjct: 679 GYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGAMDDAEGREIDFRNTLI 738

Query: 236 VLDATTGQNALRQV 249
           +L +  G + + Q 
Sbjct: 739 ILTSNVGSSQVMQA 752


>gi|319649805|ref|ZP_08003958.1| ATP-dependent Clp protease-like protein [Bacillus sp. 2_A_57_CT2]
 gi|317398559|gb|EFV79244.1| ATP-dependent Clp protease-like protein [Bacillus sp. 2_A_57_CT2]
          Length = 714

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 75/213 (35%), Gaps = 22/213 (10%)

Query: 1   MSNQK---VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSD 57
           +S QK   +  E      KL +        L     +      +D    +E+    I   
Sbjct: 346 ISRQKELVLNEEKYEEAAKLREKELKLQQALNG--DNKAERPVIDVSHIQEI----IEKK 399

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-IL 115
            G+ V  K+ E+   K    + S+   +   +E + K+   + +         RP    L
Sbjct: 400 TGIPV-GKLAEDEQEKMQNLEESLAEKVIGQAEAVQKVSKAIRRSRAGLKSKDRPIGSFL 458

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            VG  GVGKT +   L++++   G K  +   D          +     + +  + S  G
Sbjct: 459 FVGPTGVGKTELTKTLAQEL--FGSKESMIRLDMS--------EYMEKHSVSKIIGSPPG 508

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                 A +  ++ +     ++++D   + H +
Sbjct: 509 YVGHEEAGQLTEKVRRNPYSIILLDEIEKAHPD 541


>gi|312892406|ref|ZP_07751901.1| LAO/AO transport system ATPase [Mucilaginibacter paludis DSM 18603]
 gi|311295190|gb|EFQ72364.1| LAO/AO transport system ATPase [Mucilaginibacter paludis DSM 18603]
          Length = 291

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 77/234 (32%), Gaps = 47/234 (20%)

Query: 91  LIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           L+   L    +     + +    VI + G  G GK+T++  L  ++   G ++ + A D 
Sbjct: 18  LVENDLPGGLEYLKSLNLNDSIPVIGLTGPPGAGKSTLVNALISQLLTEGKRIAVLAVDP 77

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF------------KQAQAKKVDVL 197
             ++  +   +  DR       +       ++A   +               +A   D +
Sbjct: 78  --TSPFNHGSLLGDRIRMTSHFNHPDVFIRSVATRGWVGGLSVKAMEMTDVFKAYGFDYI 135

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF-HAVA 256
           +I+T G   +                 +D      V  V+      + ++ ++     +A
Sbjct: 136 MIETVGVGQSE----------------IDIAGLADVTMVVLVPESGDEIQHIKSGLMEIA 179

Query: 257 GTTGLIMTKMDGTARGGGLIPIVV-----THKIPVYF-------LGVGEGINDL 298
                I+ K D     G    +         ++PV F       +G+GE +  L
Sbjct: 180 DV--FIVNKADRDPGDGFANNLQKLIHYNQVQVPV-FKTVAINNIGIGEILKHL 230


>gi|295702547|ref|YP_003595622.1| putative efflux ABC transporter ATP-binding protein [Bacillus
           megaterium DSM 319]
 gi|294800206|gb|ADF37272.1| putative efflux ABC transporter, ATP-binding protein [Bacillus
           megaterium DSM 319]
          Length = 518

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDA 138
           +  +++++ S+L+     PLSKP N     R   I +VG NG+GKTT    L   +    
Sbjct: 320 TSSKLIFETSDLVIGYGEPLSKPLNLKME-RGQKIALVGANGIGKTT---LLKSILGEIK 375

Query: 139 GLKVMLAAGDTFRSAAIDQ 157
            +   +  GD       +Q
Sbjct: 376 PISGSVEKGDYQHIGYFEQ 394


>gi|256378874|ref|YP_003102534.1| ABC transporter [Actinosynnema mirum DSM 43827]
 gi|255923177|gb|ACU38688.1| ABC transporter related [Actinosynnema mirum DSM 43827]
          Length = 599

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 23/220 (10%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            + +  +      L  V+    + + P+ +  +     R HV  +VG +G GK+T++  L
Sbjct: 321 ERDHPAEERPVLELRAVTAGYREDVPPVLRGVDLVVPRRGHV-ALVGPSGAGKSTLLAVL 379

Query: 132 SKKMSD-------AGLKVMLAAGDTFRS--AAIDQLKIWADRTSADFVCSEIGSDAAALA 182
            + +          G        D  R+  A ++Q       T  D +         A  
Sbjct: 380 LRFLEPDSGQVLLHGRPYTERTHDEVRARLAYVEQDTPVVPGTLRDNLAFTHPDADDAEL 439

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +A  QAQ    D +     G       L    G+  RV           VL + +AT  
Sbjct: 440 LDAVAQAQLT--DTVAALPLGLDTPLDALPLSGGQRQRVALARALLRAPDVLLLDEATAQ 497

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            +A+ +  +   +              AR   ++ +    
Sbjct: 498 LDAITEAAVQQRIR-----------EHARTSAVVTVAHRL 526


>gi|168186175|ref|ZP_02620810.1| type IV pilus assembly protein TapB [Clostridium botulinum C str.
           Eklund]
 gi|169295798|gb|EDS77931.1| type IV pilus assembly protein TapB [Clostridium botulinum C str.
           Eklund]
          Length = 511

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 28/136 (20%)

Query: 21  FASTSLKLKEGITDIISSRRLDDG--VREELEDLLIRSDIGVAVA-------QKIVEELL 71
             +T +K+K G+   IS + +     +  E  +     D  + V+       +KIV  +L
Sbjct: 182 LVNTRIKIKSGMD--ISKKMIPQDGKMAYEFRE----KDFNLRVSSLPTINGEKIVIRIL 235

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            K   K++ +  ++ D  +LI               +H   +ILV G  G GKTT    L
Sbjct: 236 YKSK-KNIDINNLIEDKEDLIL---------IKKILNHPSGIILVTGPTGSGKTTT---L 282

Query: 132 SKKMSDAGLKVMLAAG 147
              ++    K      
Sbjct: 283 CSMLNYLNSKERNIVT 298


>gi|197116695|ref|YP_002137122.1| GAF sensor PilB/PulE/GspE family ATPase [Geobacter bemidjiensis
           Bem]
 gi|197086055|gb|ACH37326.1| GAF sensor PilB/PulE/GspE family ATPase [Geobacter bemidjiensis
           Bem]
          Length = 767

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 96  LMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVI 128
           L   ++    D   +P+  ILVVG  G GKTT +
Sbjct: 494 LTERNRQVFTDCIKKPYGLILVVGPTGSGKTTTL 527


>gi|114798020|ref|YP_760567.1| general secretory pathway protein E [Hyphomonas neptunium ATCC
           15444]
 gi|114738194|gb|ABI76319.1| general secretory pathway protein E [Hyphomonas neptunium ATCC
           15444]
          Length = 496

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 14/29 (48%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            K F    S    VILV G  G GKTT +
Sbjct: 232 EKRFRTALSEPNGVILVTGPTGSGKTTTL 260


>gi|91228579|ref|ZP_01262498.1| adenylylsulfate kinase [Vibrio alginolyticus 12G01]
 gi|269964699|ref|ZP_06178937.1| adenylylsulfate kinase [Vibrio alginolyticus 40B]
 gi|91187858|gb|EAS74171.1| adenylylsulfate kinase [Vibrio alginolyticus 12G01]
 gi|269830598|gb|EEZ84819.1| adenylylsulfate kinase [Vibrio alginolyticus 40B]
          Length = 205

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 99  LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           + K F  +    +P V+   G++G GK+TV G L  +++  G    L  GD  R  
Sbjct: 19  VDKQFRAELKKQKPAVLWFTGLSGAGKSTVAGALENRLAALGYHTYLLDGDNVRHG 74


>gi|56478279|ref|YP_159868.1| arsenical pump-driving ATPase [Aromatoleum aromaticum EbN1]
 gi|56314322|emb|CAI08967.1| arsenical pump-driving ATPase [Aromatoleum aromaticum EbN1]
          Length = 592

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 9/129 (6%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  L+   +   + R  +++++G  GVGKTT+   ++ +++  G  V L   D    AA 
Sbjct: 315 LPDLASLVDELATDRHGLVMLMGKGGVGKTTLAAAIAVELAQRGFPVHLTTSD---PAAH 371

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
               +     +      +  ++      +      A       +D  GR      L +  
Sbjct: 372 LADTLDGSLANLTVSRIDPQAETERYRRDVLDTRGAS------LDAQGRALLEEELRSPC 425

Query: 216 GKMIRVLKR 224
            + I V + 
Sbjct: 426 TEEIAVFQA 434


>gi|46127471|ref|XP_388289.1| hypothetical protein FG08113.1 [Gibberella zeae PH-1]
          Length = 1746

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           +  M     +P N D   RP  IL+ G  GVGKTT+  K+     ++G+
Sbjct: 478 LASMFDERERPGNRDKKIRPRRILIRGRAGVGKTTLCKKMVYDYINSGM 526


>gi|255531917|ref|YP_003092289.1| ABC transporter [Pedobacter heparinus DSM 2366]
 gi|255344901|gb|ACU04227.1| ABC transporter related [Pedobacter heparinus DSM 2366]
          Length = 605

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 18/166 (10%)

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
              D S+   + D++ +      P     N        +I VVG+NG GK+T+I  L + 
Sbjct: 350 IPNDASIDLEIKDLNFIYPHAEKPTLTDINIKMPSG-KIIAVVGMNGAGKSTLIKLLCRL 408

Query: 135 MSDAGLKVMLAAGDTFRSAAID---QLKIWADRTSADFVCSEIGSDAAALA-----YEAF 186
                  + L+  D  + +  +   Q+           V +        +       E  
Sbjct: 409 YDPTSGTISLSGTDIRKYSIKEYQKQICAVFQDFGKYNVSAADNIRFGDIDGKRDRIEII 468

Query: 187 KQAQAKKVDVLIIDT--------AGRLHNNSILMAGIGKMIRVLKR 224
           + A+    D   IDT         GR+  +   ++        + R
Sbjct: 469 EAAKNSGADS-FIDTFPARYDTIMGRIFEDGHEVSIGQWQKLAIAR 513


>gi|197303582|ref|ZP_03168620.1| hypothetical protein RUMLAC_02308 [Ruminococcus lactaris ATCC
           29176]
 gi|197297316|gb|EDY31878.1| hypothetical protein RUMLAC_02308 [Ruminococcus lactaris ATCC
           29176]
          Length = 518

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  ++L++  +L+     PLSKP N+       V  +VG NG+GKTT
Sbjct: 320 TPGKMLFETKDLVTGYDEPLSKPLNFSMERGQKV-ALVGTNGIGKTT 365


>gi|167043607|gb|ABZ08301.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 492

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 12/167 (7%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            + L  L+     D + +  V  V G NG  KTTV   ++  +     K        +R 
Sbjct: 88  RRALAELASLMESDPASKLKVFAVTGTNG--KTTVATLVAHVLDANNHKSGFIGTTGYRD 145

Query: 153 AA--IDQLKIWADRTSA-----DFVCSEIGSDAAALAYEAFKQA--QAKKVDVLIIDTAG 203
                + ++               + S     +  L+  A  Q   + + VDV +     
Sbjct: 146 GTHFYEAVRTTPSTVRVYELLGQMLASGCSHCSMELSSHAIDQDRIRMRDVDVALFTNLT 205

Query: 204 RLHNNSILMAGIGK-MIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           R H +      +     + L    P    +V+ V D      A    
Sbjct: 206 RDHLDYHSTFELYFAAKKKLFDELPDGAVAVVNVDDPRGKGIAADTT 252


>gi|169627514|ref|YP_001701163.1| anion transporter ATPase [Mycobacterium abscessus ATCC 19977]
 gi|169239481|emb|CAM60509.1| Probable anion transporter ATPase [Mycobacterium abscessus]
          Length = 373

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA----IDQLKIWAD 163
             +  V++  G  GVGKTT    ++ + ++ G  V++   D  R  A    I+ L     
Sbjct: 16  DRKNRVVVCCGAGGVGKTTTAASVALRAAEYGRTVVVLTIDPARRLAQSLGIEALGNTPQ 75

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +   + +  E+          A      +  D L+I  AG     SIL    
Sbjct: 76  QVQIEGLKGELY---------AMMLDMRRTFDELVIQHAGSDRAQSILDNKF 118


>gi|167951190|ref|ZP_02538264.1| general secretory pathway protein E [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 94

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVI 128
           M   + +  + D   RPH I +V G  G GKTT +
Sbjct: 1   MQSAMLQQIDPDVIKRPHGIFLVTGPTGSGKTTTL 35


>gi|125552350|gb|EAY98059.1| hypothetical protein OsI_19975 [Oryza sativa Indica Group]
          Length = 475

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 76/198 (38%), Gaps = 18/198 (9%)

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            KL+K  S    K++ +  D+ R A  D L+   D    D   +        +    F  
Sbjct: 219 AKLAKIFS----KIVRSRRDSNRPAEQDVLQYLIDSKHRDGSSTTEQEVTGWIISMVF-A 273

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG--QNAL 246
            +    +      A  L ++  L   + +   ++++   H  ++VL  +D      + AL
Sbjct: 274 GKHTSTNSTTWTGACLLTHDKFLTEALDEQKHMIQKHGDHIDYNVLLDMDILHCCIKEAL 333

Query: 247 R---QVEMFHAVAGTTGLIMTKMDGTA----RGGGLIP-IVVTHKIPVYFLGVGEGINDL 298
           R      + +  A  + ++ T+ +G A     G  L+  ++  +++P  ++     + DL
Sbjct: 334 RMHPVAPIIYRKAQKSFVVRTR-EGDAYDIPEGHNLLSPMIFNNRLP--YIYKDPHMYDL 390

Query: 299 EPFVAKDFSAVITGCLDY 316
           + F  K     + G   Y
Sbjct: 391 DRFAPKREEDKVGGMFSY 408


>gi|45201060|ref|NP_986630.1| AGL036Cp [Ashbya gossypii ATCC 10895]
 gi|44985843|gb|AAS54454.1| AGL036Cp [Ashbya gossypii ATCC 10895]
          Length = 904

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 56  SDIGVAVAQKI----VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS--- 108
           SD     A ++    V +L      K + ++RVL +      + L  +S+      S   
Sbjct: 543 SDAIAETAARLTGIPVNKLTESENEKLIKMERVLAEQVVGQVEALKAVSRAVRLSRSGLS 602

Query: 109 --HRPHVILVVGVNGVGKTTVIGKLSKKM 135
              +P   L +G++G GKT +  KL+  +
Sbjct: 603 NPKQPASFLFLGLSGSGKTELAKKLAAFL 631


>gi|46110497|ref|XP_382306.1| hypothetical protein FG02130.1 [Gibberella zeae PH-1]
          Length = 2259

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 51   DLLIRSD--IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
            DLL+  +  IG   +Q ++    +K Y ++++    L +V + I  ++  L   F  + +
Sbjct: 1524 DLLLTQEDIIGPEPSQALM---KSKAY-RELNCMIGLQEVKDAIKVLMETLKTNFERELA 1579

Query: 109  HRPHVI-----LVVGVNGVGKTTVIGKL 131
              P V      + +G  G GKTT I KL
Sbjct: 1580 EEPLVEFSLNKVFLGSPGTGKTT-IAKL 1606


>gi|304392082|ref|ZP_07374024.1| ATP-binding protein of ABC transporter [Ahrensia sp. R2A130]
 gi|303296311|gb|EFL90669.1| ATP-binding protein of ABC transporter [Ahrensia sp. R2A130]
          Length = 611

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 15/107 (14%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-------- 167
           +VG +G GKTT++  L   +    L       D    A + Q  + +             
Sbjct: 395 IVGPSGAGKTTLLNLL---LRFNDLDAGAIEIDGQEIAKVSQTSLRSALGMVSQDTALLH 451

Query: 168 ----DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
               D +   +   +    ++A +QAQA     ++ D  GR   ++ 
Sbjct: 452 RSVRDNIAFGMSDVSDEAVWDAARQAQADGFIEVLRDAKGRTGLDAH 498


>gi|294790391|ref|ZP_06755549.1| sodium extrusion ABC transporter, ATP-binding protein NatA
           [Scardovia inopinata F0304]
 gi|294458288|gb|EFG26641.1| sodium extrusion ABC transporter, ATP-binding protein NatA
           [Scardovia inopinata F0304]
          Length = 337

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           +      N + S    ++ ++G+NG GKTT +   +  ++ +   + +   DT R  A  
Sbjct: 29  VEAVSDLNLNLSQG-QILGLIGLNGAGKTTTVKMCATLLNPSAGTITVCGYDTVRHPA-- 85

Query: 157 QLKIWADRT 165
           Q +      
Sbjct: 86  QARRHMGLM 94


>gi|289648895|ref|ZP_06480238.1| general secretory pathway protein E [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866886|gb|EGH01595.1| general secretory pathway protein E [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 578

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 321 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 378


>gi|305680923|ref|ZP_07403730.1| sodium extrusion ABC transporter, ATP-binding protein NatA family
           protein [Corynebacterium matruchotii ATCC 14266]
 gi|305659128|gb|EFM48628.1| sodium extrusion ABC transporter, ATP-binding protein NatA family
           protein [Corynebacterium matruchotii ATCC 14266]
          Length = 325

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 15/144 (10%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           ++GVNG GKTT+   L+  +      V +   D   +AA       A +        + G
Sbjct: 53  ILGVNGAGKTTLSKILATWLYPTSGTVNIFGADVVTAAA------HARQHIVAVFGGDRG 106

Query: 176 SDAAALAYEAFKQAQAKKVDVL-------IIDTAGRLHNNSILMAGI--GKMIRVLKRLD 226
                 A+E      A +   L       I+D+ G        +     G   R+   + 
Sbjct: 107 LYPMLTAWENLSYFAAIRGAALPKPQLASILDSVGLADAAHRRVEEYSKGMKQRLHIAVG 166

Query: 227 PHAPHSVLQVLDATTGQNALRQVE 250
             A   +L + + T G + +    
Sbjct: 167 LSANAPILLLDEPTVGLDPIEAAR 190


>gi|239978612|ref|ZP_04701136.1| putative gluconokinase [Streptomyces albus J1074]
 gi|291450507|ref|ZP_06589897.1| gluconokinase [Streptomyces albus J1074]
 gi|291353456|gb|EFE80358.1| gluconokinase [Streptomyces albus J1074]
          Length = 175

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           + PHV++V+GV G GKTT+   L++++      V  A GD F   A
Sbjct: 2   NTPHVVVVMGVAGTGKTTIGPLLAERL-----GVPYAEGDDFHPPA 42


>gi|300707996|ref|XP_002996187.1| hypothetical protein NCER_100745 [Nosema ceranae BRL01]
 gi|239605466|gb|EEQ82516.1| hypothetical protein NCER_100745 [Nosema ceranae BRL01]
          Length = 276

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVI 128
           N + S +P + +VVG+ G GKTT  
Sbjct: 15  NLNISEKPTIFIVVGMAGSGKTTFC 39


>gi|255282999|ref|ZP_05347554.1| ABC transporter, ATP-binding protein [Bryantella formatexigens DSM
           14469]
 gi|255266538|gb|EET59743.1| ABC transporter, ATP-binding protein [Bryantella formatexigens DSM
           14469]
          Length = 240

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 5/162 (3%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+    + D      V+ ++G+NG GKTT I  ++  +           G  FR    + 
Sbjct: 21  PVISQLSLDLEAG-EVVGLIGMNGAGKTTFIKTMAGLLRSFHADSATWNGKEFRFCDRE- 78

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL--HNNSILMAGI 215
            K       A+       +    LAY A         DV  + +      + + +L    
Sbjct: 79  FKRSRYVVFAEDSSFRYFTFREYLAYAAASYGIKPP-DVTYLISGFHFEEYTDVLLKELS 137

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
               + +  +   A H  L +LD        +  E  + + G
Sbjct: 138 TGNRKKVYLITAFALHPELLLLDEPVNGLDFQSTEFLYQLMG 179


>gi|221480962|gb|EEE19376.1| hypothetical protein TGGT1_094980 [Toxoplasma gondii GT1]
          Length = 592

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 25/167 (14%)

Query: 86  YDVSELIHKMLMPLS--KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
             + ELI  +++P++  + F       P  +L+ G  G GKT     L++  +       
Sbjct: 345 KQIQELIEAVVLPMTHKERFEKIGIRPPKGVLMYGPPGTGKT----LLARACAAQTKATF 400

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
                         LK+   +    F+         A      K      +D L  D  G
Sbjct: 401 --------------LKLAGPQLVQMFIGDGAKMVRDAFELAKEKAPAIIFIDEL--DAIG 444

Query: 204 RLHNNSIL---MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
               +S L         M+ +L +LD  +    ++V+ AT   + L 
Sbjct: 445 TKRFDSELSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRPDVLD 491


>gi|187939925|gb|ACD39062.1| arsenical resistance efflux pump protein [Pseudomonas aeruginosa]
          Length = 588

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 14/141 (9%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           D  EL  ++  P       + +   H +++V G  GVGKTT+   ++ +++  GL V L 
Sbjct: 302 DAIELPDQINAPDLSALVDEVAADGHGLVMVMGKGGVGKTTLAAAIAVELAGRGLPVHLT 361

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV--LIIDTAG 203
             D    AA     +     +      +          EA  + +   +D   + +D  G
Sbjct: 362 TSD---PAAHLADTLEGSLPNLALSRIDP--------QEATARYRQHVMDTKGVQLDAEG 410

Query: 204 RLHNNSILMAGIGKMIRVLKR 224
           R      L +   + I V + 
Sbjct: 411 RALLEEDLRSPCTEEIAVFQA 431


>gi|114462407|gb|ABI75143.1| adenylylsulfate kinase [Anabaena circinalis AWQC131C]
          Length = 189

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            +   +  V+   G++G GKTT+  ++ +K+        L  GDT R+
Sbjct: 1   MNVKQQGAVLWFTGLSGAGKTTIASRVVQKLQKQNYSTELLDGDTVRT 48


>gi|94263527|ref|ZP_01287338.1| Cobyrinic acid a,c-diamide synthase [delta proteobacterium MLMS-1]
 gi|94266474|ref|ZP_01290166.1| Cobyrinic acid a,c-diamide synthase [delta proteobacterium MLMS-1]
 gi|93452919|gb|EAT03427.1| Cobyrinic acid a,c-diamide synthase [delta proteobacterium MLMS-1]
 gi|93456060|gb|EAT06207.1| Cobyrinic acid a,c-diamide synthase [delta proteobacterium MLMS-1]
          Length = 253

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I + G  GVGKTT++  L++++ + G +V++   D
Sbjct: 3   IAISGKGGVGKTTIMALLARRLKEMGREVLVIDAD 37


>gi|91793409|ref|YP_563060.1| ATP-binding Mrp/Nbp35 family protein [Shewanella denitrificans
           OS217]
 gi|91715411|gb|ABE55337.1| ATP-binding protein, Mrp/Nbp35 family [Shewanella denitrificans
           OS217]
          Length = 376

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 25/193 (12%)

Query: 102 PFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
             N    +  HVI V  G  GVGK+T    L+  +   G KV +   D +          
Sbjct: 104 QANPALKNIKHVIAVASGKGGVGKSTTAINLAIALRLQGAKVGILDADIYGP-------- 155

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                S   +        ++   +  + A+A     L+  + G +  +       G M  
Sbjct: 156 -----SIPMMLGLSDFTPSSNDGKMMQPAKAHG---LVAQSIGFILKDEQAAMWRGPMAA 207

Query: 221 ---VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD---GTARGGG 274
                   +   P     V+D   G   ++      A      ++ T  D     A+ G 
Sbjct: 208 GALTQLLAETDWPELDYLVVDMPPGTGDIQLTLAQKAQVSGAVIVTTPQDIALADAKKG- 266

Query: 275 LIPIVVTHKIPVY 287
            I +     IPV 
Sbjct: 267 -ISLFNKVNIPVL 278


>gi|37520023|ref|NP_923400.1| hypothetical protein glr0454 [Gloeobacter violaceus PCC 7421]
 gi|35211015|dbj|BAC88395.1| glr0454 [Gloeobacter violaceus PCC 7421]
          Length = 676

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 30/144 (20%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTTV   L+K + + G +V++   D  ++    +L+I    +    +   +    A 
Sbjct: 505 GEGKTTVTLGLAKALRELGFRVLVVDADFRQAGLGRRLQIEGQSSEPVALAPSLNFLPAC 564

Query: 181 LAYEAF----------------KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
           L                     +  +    D ++IDTA        L+A          +
Sbjct: 565 LPEAGLSVGEYIAKGQFTRYLAELERTGNYDYVLIDTAP-----EDLVAE--------TK 611

Query: 225 LDPHAPHSVLQVL-DATTGQNALR 247
           L   A  +VL V+    + ++++ 
Sbjct: 612 LIAAAIRNVLFVVRSGVSNRDSVN 635


>gi|331701619|ref|YP_004398578.1| deoxyadenosine kinase [Lactobacillus buchneri NRRL B-30929]
 gi|329128962|gb|AEB73515.1| Deoxyadenosine kinase [Lactobacillus buchneri NRRL B-30929]
          Length = 217

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKM 135
           VI+  G+ GVGKTT+ GK+++ +
Sbjct: 2   VIITAGMIGVGKTTLTGKIAEHL 24


>gi|325289778|ref|YP_004265959.1| ABC transporter related protein [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965179|gb|ADY55958.1| ABC transporter related protein [Syntrophobotulus glycolicus DSM
           8271]
          Length = 287

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 104 NWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +  F+  P  I+  VG NG GK+T I  +   +   G  + L   D  +
Sbjct: 21  DISFALAPGYIMGFVGPNGAGKSTTIKLMLNLLHKQGGDIKLFGLDHVK 69


>gi|302184977|ref|ZP_07261650.1| general secretory pathway protein E [Pseudomonas syringae pv.
           syringae 642]
          Length = 578

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 321 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 378


>gi|317133408|ref|YP_004092722.1| ABC transporter related protein [Ethanoligenens harbinense YUAN-3]
 gi|315471387|gb|ADU27991.1| ABC transporter related protein [Ethanoligenens harbinense YUAN-3]
          Length = 611

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 9/150 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RS------AAIDQLKIWAD 163
           V+ +VG  G GKTTVI  L++     G +++    D     R+        + Q      
Sbjct: 402 VVALVGPTGAGKTTVISLLNRFYDVTGGRILFDGVDVRQYTRASLRRAFGIVLQDTSLMP 461

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
            T A+ +         A    A + A A      + D    +     L  G  +++ + +
Sbjct: 462 GTVAENIRYGRPDATDAEVRAAAETAGADHFISRMWDGYDTVIGEQSLSQGQRQLLTIAR 521

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            +    P  +L    +       ++++   
Sbjct: 522 AVLADPPVLILDEATSNVDTRTEKRIQEAM 551


>gi|167821216|ref|ZP_02452896.1| SciG protein [Burkholderia pseudomallei 91]
          Length = 695

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ E L  +   +       +  ++E I      L  P       +PH V L+ G +G
Sbjct: 385 VLKLAETLAERVVGQ----PHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 434

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L++ +       +      F+ A           T +    +  G     
Sbjct: 435 VGKTETALA-LAEMLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 483

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +  + +   V+++D   + H +             +   +       ++V+ + 
Sbjct: 484 QGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLT 543

Query: 238 DATTGQNALR 247
                +  ++
Sbjct: 544 SNVGSERVMQ 553


>gi|156973090|ref|YP_001443997.1| adenylylsulfate kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156524684|gb|ABU69770.1| hypothetical protein VIBHAR_00769 [Vibrio harveyi ATCC BAA-1116]
          Length = 205

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 99  LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           + K F       +P V+   G++G GK+TV G L  ++++ G    L  GD  R  
Sbjct: 19  VDKQFRAGLKKQKPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVRHG 74


>gi|154498180|ref|ZP_02036558.1| hypothetical protein BACCAP_02161 [Bacteroides capillosus ATCC
           29799]
 gi|150272727|gb|EDM99895.1| hypothetical protein BACCAP_02161 [Bacteroides capillosus ATCC
           29799]
          Length = 581

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 15/162 (9%)

Query: 116 VVGVNGVGKTTVIGKLSKKM-------SDAGLKVMLAAGDT-FRSAAIDQLKIWADRTSA 167
           +VG +G GK+T+   L++         +  G  +     D+  R+ A+    ++    + 
Sbjct: 369 IVGPSGSGKSTLCALLARFYDVDQGRITVGGYDIRKMTCDSLLRNIAMVFQNVYLFHDTI 428

Query: 168 D-FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN----NSILMAGIGKMIRVL 222
              +       A      A K A+    D ++    G         S L  G  + I + 
Sbjct: 429 RNNIRFGRPDAAEEDVIAAAKAAR--CHDFIMALPQGYDTMVGEGGSNLSGGEKQRISIA 486

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMT 264
           + L   AP  +L    A+       +++   +       I+T
Sbjct: 487 RCLLKDAPIVILDEATASVDPENEHEIQEALSALVRGKTIIT 528


>gi|125551394|gb|EAY97103.1| hypothetical protein OsI_19026 [Oryza sativa Indica Group]
          Length = 901

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 85  LYDVSELIHKMLMPLSKPFNW---DFSHRPHVILVVGVNGVGKTTVIGKLSK--KMSDAG 139
           LY  +E +  +  P  K   W   D S +  V+ +VG  G+GKTT    L+        G
Sbjct: 159 LYVEAEKLVGIDGPREKIIEWLEKDESQKLKVVCIVGFGGLGKTT----LANQVYHKMKG 214

Query: 140 LKVMLAAGDTFR 151
                +     R
Sbjct: 215 QFDCSSCMPVSR 226


>gi|229543031|ref|ZP_04432091.1| arsenite-activated ATPase ArsA [Bacillus coagulans 36D1]
 gi|229327451|gb|EEN93126.1| arsenite-activated ATPase ArsA [Bacillus coagulans 36D1]
          Length = 590

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 13/135 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT-SADFV 170
            VI  +G  GVGKTT+   ++  ++  G+KV L + D       + LK   + T +    
Sbjct: 331 KVIFTMGKGGVGKTTIAATIAVALARKGVKVHLTSTD-----PANHLKYVVEDTENIKLS 385

Query: 171 CSEIGSDAAALAYEAFKQAQAKK--VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
             +   +      E   +A+      DV  ++   R             + R    +   
Sbjct: 386 KIDEKQELLRYQNEVLSKARETMSEDDVAYVEEDLRSP-----CTQEIAVFRAFAEIVDK 440

Query: 229 APHSVLQVLDATTGQ 243
           A + V+ +  A TG 
Sbjct: 441 AENEVVIIDTAPTGH 455


>gi|66046380|ref|YP_236221.1| type II secretion system protein E [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257087|gb|AAY38183.1| type II secretion system protein E:General secretory system II,
           protein E, N-terminal [Pseudomonas syringae pv. syringae
           B728a]
          Length = 585

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 328 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 385


>gi|66813766|ref|XP_641062.1| hypothetical protein DDB_G0280583 [Dictyostelium discoideum AX4]
 gi|60469097|gb|EAL67093.1| hypothetical protein DDB_G0280583 [Dictyostelium discoideum AX4]
          Length = 965

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 64/190 (33%), Gaps = 29/190 (15%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
             + +  + +G+ G+GKTT+I  L   ++                   D  K   + T+ 
Sbjct: 517 DRKSYNFMFLGMQGIGKTTIIELLLNILTGQF---------------YDGPKQLCEETNG 561

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
               ++       +          +   + ++DT G + ++   +     +  ++ ++  
Sbjct: 562 ILNKTKTVCSYEIIYC----SNNTRIFTITLVDTPGFIGSDDS-IEDCKLLKYIISKVGK 616

Query: 228 -HAPHSVLQVLDAT---TGQNALRQVEMFHAVAGTTGL-----IMTKMDGTARGGGLIPI 278
             A  +V  V++ T        LR +    ++           I+T  D + +    + I
Sbjct: 617 LEAIDNVSYVINNTLTRKTHEPLRVLHNIFSILPKEAFECLSTIITFCDDSNQEIASLNI 676

Query: 279 VVTHKIPVYF 288
           +      + +
Sbjct: 677 LNEILAGIKY 686


>gi|330987894|gb|EGH85997.1| general secretory pathway protein E [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 578

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 321 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 378


>gi|330900577|gb|EGH31996.1| general secretory pathway protein E [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 578

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 321 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 378


>gi|320459460|dbj|BAJ70081.1| putative ABC transporter permease component [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 607

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 27/184 (14%)

Query: 100 SKPFNWDFSHRPH---VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSA 153
            KP   DFS        + +VG  G GKTT++  L +    +G  + +   DT    R  
Sbjct: 380 GKPIIHDFSASVKAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWN 439

Query: 154 AIDQLKIWADRT---------SADFVCSEIGSDAAALAYEAFK-----QAQAKKVDVLII 199
             DQ  +    T         +  +    +       A +A       ++     D ++ 
Sbjct: 440 VHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIEDACKAVGLDHFIRSLPDGYDTVLD 499

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
           D        S L  G  +++ + + +   AP  +L    ++        ++         
Sbjct: 500 D-------KSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVG 552

Query: 260 GLIM 263
               
Sbjct: 553 RTSF 556


>gi|315634355|ref|ZP_07889642.1| ATP-dependent metallopeptidase HflB [Aggregatibacter segnis ATCC
           33393]
 gi|315476945|gb|EFU67690.1| ATP-dependent metallopeptidase HflB [Aggregatibacter segnis ATCC
           33393]
          Length = 644

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 27/167 (16%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  IL+VG  G GKT     L+K ++        
Sbjct: 157 EAKEEVAEIVDFLREPKKFQNLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 212

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QAKKVDVLIIDTAG 203
               +                  +       S    +  +A K A     +D   ID  G
Sbjct: 213 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCLIFIDE--IDAVG 255

Query: 204 RLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           R     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 256 RQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLD 302


>gi|302524856|ref|ZP_07277198.1| LAO/AO transport system ATPase [Streptomyces sp. AA4]
 gi|302433751|gb|EFL05567.1| LAO/AO transport system ATPase [Streptomyces sp. AA4]
          Length = 320

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 13/153 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++EL+ +           L  + E     +  +++     ++ R  V+ + G  GVGK+T
Sbjct: 6   LDELVGRAREGQPRAVARLISLVEDSSPHVADIARALT-PYTGRARVVGLTGPPGVGKST 64

Query: 127 -VIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIGSDA 178
                L+  +   GL+V + A D        A+      +   A                
Sbjct: 65  STSALLTA-LRGEGLRVGVLAIDPSSPFSGGALLGDRIRMTEHATDPGVFIRSMATRGHL 123

Query: 179 AALAY---EAFKQAQAKKVDVLIIDTAGRLHNN 208
             L++   +A +   A   DV++I+T G   + 
Sbjct: 124 GGLSWATPQAVRVLDAAGFDVVLIETVGVGQSE 156


>gi|325980833|ref|YP_004293236.1| type IV secretion/conjugal transfer ATPase, VirB4 family
           [Nitrosomonas sp. AL212]
 gi|325533338|gb|ADZ28057.1| type IV secretion/conjugal transfer ATPase, VirB4 family
           [Nitrosomonas sp. AL212]
          Length = 844

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 19/167 (11%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDAGLKVMLAAGDTF-----RSAAID 156
            N       H  +  G  G GK+T +  ++ ++    G+ +             R+    
Sbjct: 481 LNLHVRDLGHTFMF-GPTGAGKSTHLALIAAQLRRYQGMSIYCFDKGMSMYPLTRAVGGQ 539

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
              +  D  S  F   +     +  A+ A +         L+++  G +    +    I 
Sbjct: 540 HFTVAGDDESLAFCPLQFLQSKSDRAW-ALEWIC------LMVELNG-ITVTPLQRNEIS 591

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
             I  + +   H     L  +       A+R+    +++ G  G ++
Sbjct: 592 HAIANMHQSGSHTLSDFLMTI----QDEAIREALRQYSIDGMMGHLL 634


>gi|158316007|ref|YP_001508515.1| bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate
           kinase protein [Frankia sp. EAN1pec]
 gi|158111412|gb|ABW13609.1| sulfate adenylyltransferase, large subunit [Frankia sp. EAN1pec]
          Length = 647

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            RP V+   G++G GK+T+   + K++ + G    L  GD  R  
Sbjct: 459 QRPAVVWFSGLSGAGKSTIANLVEKRLHEQGYHTYLLDGDNVRHG 503


>gi|153834372|ref|ZP_01987039.1| adenylylsulfate kinase [Vibrio harveyi HY01]
 gi|148869220|gb|EDL68242.1| adenylylsulfate kinase [Vibrio harveyi HY01]
          Length = 205

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 99  LSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           + K F       +P V+   G++G GK+TV G L  ++++ G    L  GD  R  
Sbjct: 19  VDKQFRAGLKKQKPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVRHG 74


>gi|13096098|gb|AAF04293.2|AF190739_1 fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase
           [Arabidopsis thaliana]
          Length = 744

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 65/226 (28%), Gaps = 50/226 (22%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV--- 170
           I++VG+   GKT    KL++ +   G          +R     +LK      SADF    
Sbjct: 345 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR-----RLK-HGVNMSADFFRAD 398

Query: 171 ---CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG----------- 216
                E  ++ AALA E       +   V I D          ++  +            
Sbjct: 399 NPEGVEARTEVAALAMEDMIAWMQEGGQVGIFDATNSTRVRRNMLMKMAEGKCKIIFLET 458

Query: 217 ---------KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
                    + IR+  +  P     +         ++ L   E  +        I   +D
Sbjct: 459 LCNDERIIERNIRLKIQQSPDYSEEMDFEAGVRDFRDRLANYEKVYEPVEEGSYI-KMID 517

Query: 268 GTARGGGLIPI-----------------VVTHKIPVYFLGVGEGIN 296
             +  GG I +                       P+     GE ++
Sbjct: 518 MVSGNGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESMD 563


>gi|28870481|ref|NP_793100.1| general secretion pathway protein E [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213970081|ref|ZP_03398213.1| general secretion pathway protein E [Pseudomonas syringae pv.
           tomato T1]
 gi|28853728|gb|AAO56795.1| general secretion pathway protein E [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213925185|gb|EEB58748.1| general secretion pathway protein E [Pseudomonas syringae pv.
           tomato T1]
          Length = 585

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 328 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 385


>gi|73957112|ref|XP_863028.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38
           isoform 6 [Canis familiaris]
          Length = 1241

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 46/233 (19%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSD--IGVAVAQKIVEELLTK-------RYAKDV 79
              + DI+  ++      EE +  L   D  +     QK  + +  K          K +
Sbjct: 471 GTKLGDIMGVKK-----EEEPDKALTE-DGKVDYRTEQKFADHMKKKSEASSEFAKKKSI 524

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
             QR    +  +  ++L  +             +++VVG  G GKTT   +L++ + + G
Sbjct: 525 LEQRQYLPIFAVQQELLTIIRD---------NSIVIVVGETGSGKTT---QLTQYLHEDG 572

Query: 140 LKVMLAAGDTF--RSAAIDQLKIWADRTSADF-------VCSEIGSDAAALA-------- 182
                  G T   R AA+   K  ++    +        +  E  +    L         
Sbjct: 573 YTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGIL 632

Query: 183 -YEAFKQAQAKKVDVLIIDTA-GRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
             E+ ++A       +I+D A  R  N  +L   + ++        P     V
Sbjct: 633 LRESLREADLDHYSAVIMDEAHERSLNTDVLFGLLREVRAGCAWRLPACQVQV 685


>gi|47208452|emb|CAF96167.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 228

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSK 133
           P  IL+VG++G GKTT++ KL  
Sbjct: 17  PVRILMVGLDGAGKTTLLYKLKL 39


>gi|47208451|emb|CAF96166.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 213

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSK 133
           P  IL+VG++G GKTT++ KL  
Sbjct: 17  PVRILMVGLDGAGKTTLLYKLKL 39


>gi|47220757|emb|CAG11826.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSK 133
           P  IL+VG++G GKTT++ KL  
Sbjct: 17  PVRILMVGLDGAGKTTLLYKLKL 39


>gi|148549786|ref|YP_001269888.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida F1]
 gi|148513844|gb|ABQ80704.1| membrane protease FtsH catalytic subunit [Pseudomonas putida F1]
 gi|313500627|gb|ADR61993.1| FtsH [Pseudomonas putida BIRD-1]
          Length = 634

 Score = 37.5 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 201 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|330966307|gb|EGH66567.1| general secretory pathway protein E [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 578

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 321 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 378


>gi|301616357|ref|XP_002937626.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16 [Xenopus (Silurana) tropicalis]
          Length = 1185

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 30/151 (19%)

Query: 29  KEGITDIIS-SRRLDDGVREELEDLLIRSD--IGVAVAQKIVEELLTKRYA-------KD 78
              + DI+   +++D+       D  I  D  +     QK  + +  +  A       K 
Sbjct: 456 GTKLGDIMGVKKQVDEP------DKPIAEDGAVDYKAEQKFADHMRERSEASSDFSRKKS 509

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           +  QR    +  +  ++L  +             +++VVG  G GKTT   +L++ + + 
Sbjct: 510 LMEQRQYLPIFAVQQELLTIIRD---------NSIVIVVGETGSGKTT---QLTQYLHED 557

Query: 139 GLKVMLAAGDTF--RSAAIDQLKIWADRTSA 167
           G         T   R AA+   K  ++    
Sbjct: 558 GYTDYGMIACTQPRRVAAMSVAKRVSEEMQV 588


>gi|301381438|ref|ZP_07229856.1| general secretory pathway protein E [Pseudomonas syringae pv.
           tomato Max13]
 gi|302132992|ref|ZP_07258982.1| general secretory pathway protein E [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 578

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 321 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 378


>gi|297198552|ref|ZP_06915949.1| shikimate kinase [Streptomyces sviceus ATCC 29083]
 gi|297147124|gb|EDY59519.2| shikimate kinase [Streptomyces sviceus ATCC 29083]
          Length = 179

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           P V++V+GV G GKTT+   L+ ++      V  A  D F   A
Sbjct: 15  PKVVVVMGVAGTGKTTIGPLLAARL-----GVPYAEADDFHPPA 53


>gi|304315869|ref|YP_003851014.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777371|gb|ADL67930.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 611

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A+ I +E   K    DV+      +  + I + L    K F    +  P  +L+VG  G 
Sbjct: 145 AKMITDE-KKKVTFNDVAGADEEKEELQEIVEFLK-FPKKFLDLGARIPKGVLLVGPPGT 202

Query: 123 GKTTVIGK 130
           GKT  + K
Sbjct: 203 GKTL-LAK 209


>gi|260588577|ref|ZP_05854490.1| phosphoribulokinase family protein [Blautia hansenii DSM 20583]
 gi|260541052|gb|EEX21621.1| phosphoribulokinase family protein [Blautia hansenii DSM 20583]
          Length = 576

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 43/99 (43%), Gaps = 16/99 (16%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRP 111
           I++D        + E +  +  +  + +   L +  ++++  K++   ++ F        
Sbjct: 266 IQAD----TVGDLNERITKEGASNLILIAEALQEAKIAQIAKKIVEAGNRKF-------- 313

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
             I++ G +  GKTT   +LS ++S  G+K      D +
Sbjct: 314 --IMIAGPSSSGKTTFSHRLSIQLSAQGMKPHPIGVDNY 350


>gi|114572274|ref|XP_001165855.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
           isoform 3 [Pan troglodytes]
          Length = 434

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   K +
Sbjct: 2   TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY 55


>gi|28379892|ref|NP_786784.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Lactobacillus
           plantarum WCFS1]
 gi|300769025|ref|ZP_07078915.1| ATP-dependent Clp protease [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308182105|ref|YP_003926233.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|28272733|emb|CAD65662.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Lactobacillus
           plantarum WCFS1]
 gi|300493437|gb|EFK28615.1| ATP-dependent Clp protease [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308047596|gb|ADO00140.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 704

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 13/151 (8%)

Query: 2   SNQKVASESLSWIR--KLTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSD 57
           + ++ A +S  + +   + K    T  K+K+       +  +DD     E L  + + +D
Sbjct: 343 AAKEAAVKSEDFTKAADIKKSIEETKQKIKKTDQKEKITATIDDVAQSVERLTGIPV-AD 401

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G    + + + L  +  +K +     +  V++ I +     S+             L V
Sbjct: 402 MGANDIEHL-KNLDKRLKSKVIGQDEAVEMVAKAIRRNRAGFSEG-----DQPIGSFLFV 455

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           G  GVGKT +  +L+  +   G K  +   D
Sbjct: 456 GPTGVGKTELAKQLA--LDMFGNKNAIIRLD 484


>gi|68481188|ref|XP_715509.1| conserved hypothetical ATP-binding protein [Candida albicans
           SC5314]
 gi|68481329|ref|XP_715439.1| conserved hypothetical ATP-binding protein [Candida albicans
           SC5314]
 gi|46437061|gb|EAK96414.1| conserved hypothetical ATP-binding protein [Candida albicans
           SC5314]
 gi|46437133|gb|EAK96485.1| conserved hypothetical ATP-binding protein [Candida albicans
           SC5314]
          Length = 331

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
              +   +V   +  +L     P  ++       +LV+G  GVGK+T    +   M   G
Sbjct: 30  KKNKEKKNVYNKLFHLLFAHQTPTKFNKDMSRTGVLVLGPAGVGKSTFCNSMIAYMQSIG 89

Query: 140 LKVMLAAGD 148
            +  +   D
Sbjct: 90  RRAHIVNLD 98


>gi|320323742|gb|EFW79826.1| general secretory pathway protein E [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327884|gb|EFW83889.1| general secretory pathway protein E [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 574

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 317 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 374


>gi|318041651|ref|ZP_07973607.1| cell division protein FtsH [Synechococcus sp. CB0101]
          Length = 600

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 27/171 (15%)

Query: 85  LYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +  E + +++  L +P  F    +  P  +L+VG  G GKT     L+K ++      
Sbjct: 148 IQEAKEELQEVVAFLKEPERFTAVGARIPKGVLLVGPPGTGKT----LLAKAIAGE---- 199

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK-KVDVLIIDT 201
             A    F  AA +           +       S    L  +A ++A     +D   ID 
Sbjct: 200 --AGVPFFSMAASEF---------VELFVGVGASRVRDLFRQAKEKAPCIVFIDE--IDA 246

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            GR                + ++L  +D  A +S + +L AT   + L   
Sbjct: 247 VGRQRGAGIGGGNDEREQTLNQLLTEMDGFADNSGVILLAATNRPDVLDTA 297


>gi|311743210|ref|ZP_07717017.1| possible tyrosine-protein kinase [Aeromicrobium marinum DSM 15272]
 gi|311313278|gb|EFQ83188.1| possible tyrosine-protein kinase [Aeromicrobium marinum DSM 15272]
          Length = 454

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 64/226 (28%), Gaps = 47/226 (20%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTV 127
           ++ T+    D+      ++   ++   L         D      VI V   + G GKTT 
Sbjct: 218 DVRTRPLLSDLEPHHPRHEALRILRTNLQ------FLDVDQAQQVITVTSALPGDGKTTT 271

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSA---------------------AIDQLKIWADRTS 166
              L++ +++ G  V++  GD  R                        ID+    +    
Sbjct: 272 TCALAQAIAETGRSVVVVEGDLRRPRLAEMFGIERTVGLTTALVGRIPIDEAVQASGTPG 331

Query: 167 ADFVCSE-----IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            D + S              A          + DV++ID         +L      ++  
Sbjct: 332 LDVLTSGALPPNPTEILQTTAMARLVDGLRDRYDVVLIDAP------PLLPVSDAALLAA 385

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG--TTGLIMTK 265
           L          ++ V    T  + L               G ++T 
Sbjct: 386 LSDGA------IVLVRHGRTRADELELAAERLRAVDATVLGTVLTM 425


>gi|229521843|ref|ZP_04411260.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TM 11079-80]
 gi|229340768|gb|EEO05773.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           cholerae TM 11079-80]
          Length = 426

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   +KI E L      ++ + + +   V     ++    +
Sbjct: 46  NDIIREEIKDVLPKKESTALPTPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDT 105

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 106 TSEGVELGKSN--ILLIGPTGSGKTLLAETLARLL 138


>gi|268592831|ref|ZP_06127052.1| ATP-dependent metallopeptidase HflB [Providencia rettgeri DSM 1131]
 gi|291311617|gb|EFE52070.1| ATP-dependent metallopeptidase HflB [Providencia rettgeri DSM 1131]
          Length = 659

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVGEIVEFLREPARFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRADVLD 304


>gi|221632235|ref|YP_002521456.1| thymidylate kinase [Thermomicrobium roseum DSM 5159]
 gi|254808313|sp|B9KXL4|KTHY_THERP RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
 gi|221155655|gb|ACM04782.1| thymidylate kinase [Thermomicrobium roseum DSM 5159]
          Length = 210

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           I   G  G GKTT    L+ ++ +AG  +++  
Sbjct: 5   ITFEGPEGAGKTTQCALLAARLREAGYSLLVTR 37


>gi|91228946|ref|ZP_01262843.1| cell division protein FtsH [Vibrio alginolyticus 12G01]
 gi|91187506|gb|EAS73841.1| cell division protein FtsH [Vibrio alginolyticus 12G01]
          Length = 569

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 159 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 212

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 213 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 256

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 257 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 305


>gi|77641052|gb|ABB00397.1| I2 [Capsicum annuum]
          Length = 234

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           T+R++  +  +  ++     I +++  L           P V+ +VG+ GVGKTT +GK 
Sbjct: 1   TRRHSTSLVDESDVFGRQNEIEELIDHLLS--KDASEKSPAVVPIVGMGGVGKTT-LGKA 57

Query: 132 SK-------KMSDAGLKVMLAAGDTFRSA 153
           +          +      +    D FR  
Sbjct: 58  AYNDEKVQSHFNLTAWFCVSEPYDAFRIT 86


>gi|85715558|ref|ZP_01046538.1| arginine/ornithine transport system ATPase [Nitrobacter sp.
           Nb-311A]
 gi|85697497|gb|EAQ35374.1| arginine/ornithine transport system ATPase [Nitrobacter sp.
           Nb-311A]
          Length = 326

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 19/145 (13%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             EL+ ++L    K      +  P         GVGK+T I  L   +   G ++ + A 
Sbjct: 40  ARELVQELLPVTGKAIRVGITGSP---------GVGKSTTIDTLGMDLIARGHRIAVLAV 90

Query: 148 D--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           D  + RS          + +L   A         +      AA   EA    +A   DV+
Sbjct: 91  DPSSARSGGSILGDKTRMARLAAAAAAYIRPSPAAGTLGGVAARTREAMLLCEAAGFDVI 150

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVL 222
           +++T G   + + +       + ++
Sbjct: 151 LVETIGTGQSETAVSDMTDFFLALM 175


>gi|238797558|ref|ZP_04641055.1| Cell division protease ftsH [Yersinia mollaretii ATCC 43969]
 gi|238718555|gb|EEQ10374.1| Cell division protease ftsH [Yersinia mollaretii ATCC 43969]
          Length = 651

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|47096421|ref|ZP_00234015.1| hypothetical protein LMOf6854_0346 [Listeria monocytogenes str.
           1/2a F6854]
 gi|254900482|ref|ZP_05260406.1| hypothetical protein LmonJ_11729 [Listeria monocytogenes J0161]
 gi|254913567|ref|ZP_05263579.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937852|ref|ZP_05269549.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|255016662|ref|ZP_05288788.1| hypothetical protein LmonF_00226 [Listeria monocytogenes FSL
           F2-515]
 gi|47015216|gb|EAL06155.1| hypothetical protein LMOf6854_0346 [Listeria monocytogenes str.
           1/2a F6854]
 gi|258610456|gb|EEW23064.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293591581|gb|EFF99915.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 213

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 17/125 (13%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P  I+ +GV GVGKTT I K+                 +F+S A D++K    +   ++
Sbjct: 32  KPSFIMFIGVPGVGKTT-ISKI------------FETNYSFKSIATDEIKYNLQQMGIEY 78

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D   +    F +    +V+++    + +     IL+    +   + K +    
Sbjct: 79  ----TIEDLFDIQKLMFMKLAEYRVNIISDSNSAKNWQREILINFCKRYRYIFKIVYLTC 134

Query: 230 PHSVL 234
              +L
Sbjct: 135 EREIL 139


>gi|328955883|ref|YP_004373216.1| ABC transporter related protein [Coriobacterium glomerans PW2]
 gi|328456207|gb|AEB07401.1| ABC transporter related protein [Coriobacterium glomerans PW2]
          Length = 850

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 21/158 (13%)

Query: 114 ILVVGVNGVGKTTVIGKL-SKKMSDAG--------------LKVMLAAGDTFRSAAIDQL 158
           + + G NG GK+T+   + + +++D G               +         R +A DQ+
Sbjct: 33  VCLAGPNGSGKSTLAALMCAMRLADDGEVRIDGLDARIDSQRREARRRVGFVRQSAADQM 92

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
                     F    +G   A + +   +  +    DV +ID  GR      L  G  + 
Sbjct: 93  VASIVEEEVAFGPRNLGLAEADIEHRVERALR----DVGLIDLMGRDVR--TLSGGEQQR 146

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           + +   L     + VL  + +     A           
Sbjct: 147 VALAGVLAMEPRYVVLDEVTSNLDVVARATARALFRRL 184


>gi|259418000|ref|ZP_05741919.1| copper-translocating P-type ATPase [Silicibacter sp. TrichCH4B]
 gi|259346906|gb|EEW58720.1| copper-translocating P-type ATPase [Silicibacter sp. TrichCH4B]
          Length = 727

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 30/109 (27%), Gaps = 12/109 (11%)

Query: 153 AAIDQLKIWADRTSA---DFVCSEIGSDAAALAYEAFKQAQAKKVDVLII---------D 200
            A  QL+  A          V           A EA    Q   +DV++I         D
Sbjct: 529 GARGQLEQTATWLDLGDEMPVAIRFTDALRPGAQEAVSALQDAGMDVILISGDTVAAVRD 588

Query: 201 TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            A RL   S +                 A H VL V D      AL   
Sbjct: 589 LAERLGIQSWVAEAFPDDKAARVSQLTEAGHKVLMVGDGLNDTAALAGA 637


>gi|239815701|ref|YP_002944611.1| ATP-dependent helicase HrpA [Variovorax paradoxus S110]
 gi|239802278|gb|ACS19345.1| ATP-dependent helicase HrpA [Variovorax paradoxus S110]
          Length = 1289

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            V++V G  G GKTT + K++  +   G   + A     R     Q +  A  + A  + 
Sbjct: 35  QVVIVCGETGSGKTTQLPKIALAL---GRGKLNAPPGQGRLIGHTQPRRIAASSVAKRIA 91

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLDPHA 229
            E+ +    +     +       D L  D + +L  + IL+A      +++    L    
Sbjct: 92  EELKTPLGDVVGFKVR-----FQDRLSRDASVKLMTDGILLAETQTDPLLKAYDTLIIDE 146

Query: 230 PHSVLQVLDATTGQ 243
            H     +D   G 
Sbjct: 147 AHERSLNIDFLLGY 160


>gi|218883423|ref|YP_002427805.1| ABC transporter related [Desulfurococcus kamchatkensis 1221n]
 gi|218765039|gb|ACL10438.1| ABC transporter related [Desulfurococcus kamchatkensis 1221n]
          Length = 467

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           PL K  N  +  R  V+ +VG NG GK+T++  L+  +   G
Sbjct: 269 PLVKNINI-YVRRGEVVALVGPNGSGKSTLLKTLAGFLKPLG 309


>gi|8572069|gb|AAF76986.1|AF242859_1 fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase
           [Arabidopsis thaliana]
          Length = 745

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 65/226 (28%), Gaps = 50/226 (22%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV--- 170
           I++VG+   GKT    KL++ +   G          +R     +LK      SADF    
Sbjct: 346 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR-----RLK-HGVNMSADFFRAD 399

Query: 171 ---CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG----------- 216
                E  ++ AALA E       +   V I D          ++  +            
Sbjct: 400 NPEGVEARTEVAALAMEDMIAWMQEGGQVGIFDATNSTRVRRNMLMKMAEGKCKIIFLET 459

Query: 217 ---------KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
                    + IR+  +  P     +         ++ L   E  +        I   +D
Sbjct: 460 LCNDERIIERNIRLKIQQSPDYSEEMDFEAGVRDFRDRLANYEKVYEPVEEGSYI-KMID 518

Query: 268 GTARGGGLIPI-----------------VVTHKIPVYFLGVGEGIN 296
             +  GG I +                       P+     GE ++
Sbjct: 519 MVSGNGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESMD 564


>gi|26991401|ref|NP_746826.1| ATP-dependent metalloprotease FtsH [Pseudomonas putida KT2440]
 gi|24986470|gb|AAN70290.1|AE016669_8 cell division protein FtsH [Pseudomonas putida KT2440]
          Length = 637

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 145 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 203

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 204 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 244

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 245 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 303

Query: 242 GQNALR 247
             + L 
Sbjct: 304 RPDVLD 309


>gi|330958210|gb|EGH58470.1| general secretory pathway protein E [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 574

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 317 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 374


>gi|323490738|ref|ZP_08095940.1| ABC transporter related protein [Planococcus donghaensis MPA1U2]
 gi|323395620|gb|EGA88464.1| ABC transporter related protein [Planococcus donghaensis MPA1U2]
          Length = 608

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +++   +L +     V         SEL+   +       N D S    V  +VG  G 
Sbjct: 352 VKEVSTSVLERAKGSVVFENVNFGYGSELLIDNM-------NIDVSPGQTV-AIVGPTGA 403

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           GKTT+I  L +       ++++   D+
Sbjct: 404 GKTTLINLLMRFYELNAGRILIDGLDS 430


>gi|301300814|ref|ZP_07206995.1| ABC transporter, ATP-binding protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851590|gb|EFK79293.1| ABC transporter, ATP-binding protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 607

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            L K FN + S    V  +VG  G GKTT+I  L +     G  + L   DT RS + ++
Sbjct: 383 QLMKDFNLNVSPGEKV-AIVGPTGAGKTTLINLLERFYDINGGSIKLDGRDT-RSMSREE 440

Query: 158 LKIW 161
           ++  
Sbjct: 441 IRSH 444


>gi|295103896|emb|CBL01440.1| ATPases with chaperone activity, ATP-binding subunit
           [Faecalibacterium prausnitzii SL3/3]
          Length = 747

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 20/141 (14%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
             L  K   +D      ++ V++ I +    LS         RP   + VG  GVGKT +
Sbjct: 452 NALKQKVIGQD----EAVHLVAQAIKRSRADLSG------RRRPASFIFVGPTGVGKTEL 501

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           + +L++++ D    ++            D  +       +  + S  G      A +  +
Sbjct: 502 VKQLAEQLFDGPDPLIRL----------DMSEYMEKYAVSRMIGSPPGYVGYEEAGQLTE 551

Query: 188 QAQAKKVDVLIIDTAGRLHNN 208
           + + +   V++ D   + H +
Sbjct: 552 KVRRRPYSVVLFDEIEKAHPD 572


>gi|291549162|emb|CBL25424.1| Putative GTPases (G3E family) [Ruminococcus torques L2-14]
          Length = 337

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 16/163 (9%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID------QLKIWADRTSAD 168
           L+ G  G GKTT I + +  +   GL + +   D     A++      Q           
Sbjct: 6   LITGFLGAGKTTFIKEYASYLLRQGLNIGILENDF---GAVNVDMMLLQELQGEKCELEM 62

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                                     D +I++ +G    +        + +     +   
Sbjct: 63  ISGGCDKETHRRRFKTKLISMAMCGYDRVIVEPSGIYDVDEFFDGLREEPLDRWYEIG-- 120

Query: 229 APHSVLQVLDATTGQNALRQVEM--FHAVAGTTGLIMTKMDGT 269
              SV+ ++DA   +N   Q E       A    ++++++D  
Sbjct: 121 ---SVITIVDAGLEENLSDQAEYLLGSEAADAGVIVLSRLDKD 160


>gi|288928843|ref|ZP_06422689.1| phosphoribulokinase family protein [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288329827|gb|EFC68412.1| phosphoribulokinase family protein [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 553

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 103 FNWDFSHRPHV--ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
              + + RP V  +L+ G +  GKTT   +LS ++   G++ +  + D +
Sbjct: 278 IADEIAARPEVRMVLLAGPSSSGKTTTCKRLSVQLLANGIRPVQISLDDY 327


>gi|269103412|ref|ZP_06156109.1| cell division protein FtsH [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163310|gb|EEZ41806.1| cell division protein FtsH [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 649

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 159 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 212

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 213 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 256

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 257 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 305


>gi|257437888|ref|ZP_05613643.1| ABC transporter, permease/ATP-binding protein [Faecalibacterium
           prausnitzii A2-165]
 gi|257199548|gb|EEU97832.1| ABC transporter, permease/ATP-binding protein [Faecalibacterium
           prausnitzii A2-165]
          Length = 591

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLM--PLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +++     AK +     + ++ ++  + L   PL +  N D       I +VG  G GKT
Sbjct: 333 DQVPEAENAKVLETDGHV-ELKDVSFRYLPDRPLIEGLNLDVKPGQR-IAIVGPTGCGKT 390

Query: 126 TVIGKLSKKMSDAGLKVMLAAGD 148
           T+I  L +     G  + +A  D
Sbjct: 391 TLINLLMRFYDVNGGSIEVAGND 413


>gi|167553198|ref|ZP_02346948.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322328|gb|EDZ10167.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 586

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 9/129 (6%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  LS   +   S    +I+++G  GVGKTT+   ++ +++  G  V L+  D    AA 
Sbjct: 311 LPSLSSLIDGFASQGHGLIMLMGKGGVGKTTLAAAIAVELARRGYPVHLSTSD---PAAH 367

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
               +            +  ++      +   +          +D  GR      L +  
Sbjct: 368 LTDTLDGSFDGLTVSRIDPLAETERYRQQVMAEQGKN------LDEQGRAVLEEDLRSPC 421

Query: 216 GKMIRVLKR 224
            + I V + 
Sbjct: 422 TEEIAVFQA 430


>gi|167999141|ref|XP_001752276.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696671|gb|EDQ83009.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 328

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
              L   +  F       P VI +    G GKTT++  L    +  G +    + D F  
Sbjct: 63  KDELEIHTNKFKSGEEVPPLVIGISAPQGCGKTTIVYSLEYLFNSCGSRAASISIDDFYL 122

Query: 153 AAIDQLK 159
            A +Q K
Sbjct: 123 TAAEQKK 129


>gi|111224251|ref|YP_715045.1| high-affinity branched-chain amino acid ABC transporter ATP-binding
           protein [Frankia alni ACN14a]
 gi|111151783|emb|CAJ63503.1| high-affinity branched-chain amino acid transport protein (ABC
           superfamily, atp_bind) [Frankia alni ACN14a]
          Length = 242

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           +P+ + F         V+ ++G NG GKTTV+  L+  +   G +V +   D  R++ 
Sbjct: 17  VPVVRGFELTLREG-EVVALLGPNGAGKTTVLLTLAGLLPALGGEVAVHGQDVHRASP 73


>gi|77456999|ref|YP_346504.1| membrane protease FtsH catalytic subunit [Pseudomonas fluorescens
           Pf0-1]
 gi|77381002|gb|ABA72515.1| cell division protein [Pseudomonas fluorescens Pf0-1]
          Length = 635

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 201 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|15222304|ref|NP_172191.1| F2KP (FRUCTOSE-2,6-BISPHOSPHATASE); fructose-2,6-bisphosphate
           2-phosphatase [Arabidopsis thaliana]
 gi|8117172|dbj|BAA96353.1| fructose-6-phosphate,2-kinase/fructose-2, 6-bisphosphatase
           [Arabidopsis thaliana]
 gi|332189956|gb|AEE28077.1| fructose-2,6-bisphosphatase [Arabidopsis thaliana]
          Length = 744

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 65/226 (28%), Gaps = 50/226 (22%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV--- 170
           I++VG+   GKT    KL++ +   G          +R     +LK      SADF    
Sbjct: 345 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR-----RLK-HGVNMSADFFRAD 398

Query: 171 ---CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG----------- 216
                E  ++ AALA E       +   V I D          ++  +            
Sbjct: 399 NPEGVEARTEVAALAMEDMIAWMQEGGQVGIFDATNSTRVRRNMLMKMAEGKCKIIFLET 458

Query: 217 ---------KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
                    + IR+  +  P     +         ++ L   E  +        I   +D
Sbjct: 459 LCNDERIIERNIRLKIQQSPDYSEEMDFEAGVRDFRDRLANYEKVYEPVEEGSYI-KMID 517

Query: 268 GTARGGGLIPI-----------------VVTHKIPVYFLGVGEGIN 296
             +  GG I +                       P+     GE ++
Sbjct: 518 MVSGNGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESMD 563


>gi|310286735|ref|YP_003937993.1| ATP-binding cassette, subfamily B [Bifidobacterium bifidum S17]
 gi|309250671|gb|ADO52419.1| ATP-binding cassette, subfamily B [Bifidobacterium bifidum S17]
          Length = 653

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 17/179 (9%)

Query: 100 SKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSA 153
            KP   DFS        + +VG  G GKTT++  L +    +G  + +   DT    R  
Sbjct: 426 GKPIIHDFSASVSAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGIDTTSVPRWN 485

Query: 154 AIDQLKIWADRTSA---DFVCSEIGSDAAALAYEAFKQAQAKKVDVLI------IDTAGR 204
             DQ  +    T         +   S       +     +A  +D  +       DT   
Sbjct: 486 VHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDEQIVSACKAVGLDHFVRSLPQGYDTV-- 543

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           L +N+ L  G  +++ + + +   AP  +L    ++        ++             
Sbjct: 544 LDDNTSLSQGQRQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSF 602


>gi|300871007|ref|YP_003785879.1| ATP-dependent metalloprotease FtsH [Brachyspira pilosicoli 95/1000]
 gi|300688707|gb|ADK31378.1| ATP-dependent metalloprotease, FtsH [Brachyspira pilosicoli
           95/1000]
          Length = 698

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           K   KDV   +   +  + + + L   SK F    +  P  +L+VG  G GKT  + K
Sbjct: 175 KVTFKDVEGCKEAKEELQEVVQFLKDASK-FTRLGAKIPKGVLLVGPPGTGKTL-LAK 230


>gi|241667181|ref|ZP_04754759.1| chromosome partition protein A, ATPase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254875733|ref|ZP_05248443.1| chromosome partition protein A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841754|gb|EET20168.1| chromosome partition protein A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 210

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT    ++  + + G KV +   D  +  A   +    D +   +   E       
Sbjct: 17  GSGKTTTAINIACGLKEQGYKVAIVDMDKDKPDAYMWMTKNNDASDFVYNLDEKNVREKV 76

Query: 181 LAYEAFKQAQAKKVDVLIIDT 201
           L          + +D ++IDT
Sbjct: 77  L-------ELKQHLDFVVIDT 90


>gi|268680325|ref|YP_003304756.1| ATPase-like, ParA/MinD [Sulfurospirillum deleyianum DSM 6946]
 gi|268618356|gb|ACZ12721.1| ATPase-like, ParA/MinD [Sulfurospirillum deleyianum DSM 6946]
          Length = 375

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 78/242 (32%), Gaps = 36/242 (14%)

Query: 55  RSDIGVAVAQKIVEELLTKRYAK-DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
             D+G  +   I + +      + DV V++    V +             N     +  V
Sbjct: 49  SKDVGDELKASIEKAIKALGAGRVDVVVKQPKPPVEK------SNSQSGKNMAPHIKNFV 102

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ++  G  GVGKTT    L+  ++  G KV L   D +                       
Sbjct: 103 MVSSGKGGVGKTTTTVNLAIALASQGKKVGLLDADIYGPN-------VPRMMGVV----- 150

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                  +  +  K   A  ++++ + +   +     L+     +++ +++L      S 
Sbjct: 151 --DKHPEVVGQKVKPIVAYGIEMMSMGS--LMEGGQSLIWRGAMIMKAIEQLLRDILWSD 206

Query: 234 LQV----LDATTGQNALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIPIVVTHKIP 285
           L V    +   TG   L   +     AG    + T     +D T R    + +     IP
Sbjct: 207 LDVLFIDMPPGTGDAQLTLAQSVPVTAGI--CVTTPQQVALDDTER---SLDMFQKLHIP 261

Query: 286 VY 287
           + 
Sbjct: 262 IA 263


>gi|237749732|ref|ZP_04580212.1| parA [Helicobacter bilis ATCC 43879]
 gi|229374661|gb|EEO25052.1| parA [Helicobacter bilis ATCC 43879]
          Length = 221

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT+   L+ K+S+ G  V+    D  +S      +++ +    + +       A  
Sbjct: 11  GSGKTTLAINLACKLSNEGDSVLFVDSDPQKSG-----EVFVEIRKNEGLAQAFKYIAEK 65

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
               A  +   +K D ++IDT GR    
Sbjct: 66  DNLIALLKKSVEKFDSIVIDTGGRDSKE 93


>gi|217031507|ref|ZP_03437012.1| hypothetical protein HPB128_21g65 [Helicobacter pylori B128]
 gi|216946707|gb|EEC25303.1| hypothetical protein HPB128_21g65 [Helicobacter pylori B128]
          Length = 550

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 80/265 (30%), Gaps = 46/265 (17%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDII--------SSRRLDDGVREELEDLLI 54
            + +  E    + K++K F +    +   +  I         +   L+   + ELE+   
Sbjct: 93  PESMPIEKRENLNKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMSLESAHKNELENAFQ 152

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR--PH 112
           R D                           + +V E + +++  L  P  +       P 
Sbjct: 153 RYD----------------ALGVRFEDIAGVDEVKEELLEVIDYLKNPKKYQDLGIFLPK 196

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            +L++G  GVGKT     ++K ++             + + A              F+  
Sbjct: 197 GVLLIGPPGVGKTM----IAKALASEARVPF-----FYEAGARF----------LKFMWG 237

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                   L   A + A +    +  ID  G+             + ++L  +D    + 
Sbjct: 238 RGAKKVRELFMHAKRHAPSIIF-IDEIDALGKARGGHRSDEREATLNQLLTEMDGFLQND 296

Query: 233 VLQVLDATTGQNALRQVEMFHAVAG 257
            + V+ AT     + +  +      
Sbjct: 297 EVVVIGATNQMEVMDEALLRSKRFD 321


>gi|213409708|ref|XP_002175624.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275]
 gi|212003671|gb|EEB09331.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275]
          Length = 360

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 22/120 (18%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           +   +P  I+VVG+ G GKTT + +L+  +        +   D     A+ +L   A+  
Sbjct: 3   NEEKKPCCIIVVGMAGSGKTTFMQQLNAHLHRKNTPPYVMNLD----PAVYKLPYEANID 58

Query: 166 SADFVCSEIGSDAAALAYEA------------------FKQAQAKKVDVLIIDTAGRLHN 207
             D V  +       L                        + +A  VD ++IDT G++  
Sbjct: 59  IRDTVAYKEVMKQYNLGPNGGIMTSLNLFVTKFDQVLNILEKRAPSVDHILIDTPGQIEI 118


>gi|145590896|ref|YP_001152898.1| AAA ATPase [Pyrobaculum arsenaticum DSM 13514]
 gi|145282664|gb|ABP50246.1| AAA ATPase [Pyrobaculum arsenaticum DSM 13514]
          Length = 338

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 28/188 (14%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID--QLKIWADRTSAD 168
             V  V G +G GKT ++ K + + +  G KV+    +  R +  +  Q   W  R  A 
Sbjct: 9   NKVSYVYGPSGAGKTILVSKAAFEFAKEGAKVVWITFNEGRDSLYETWQSFGWNPRDVAV 68

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA-----GRLHNNSILMAGIGKMIRVLK 223
           F    I      L  +    A  +K D+ I+D        R   ++    G+  +I +  
Sbjct: 69  FDFPYIPQYRETLFNQVVDLAYKEKADIFIVDGVDAVVIDRATADAFAKMGLRSIIGIET 128

Query: 224 RLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
           R +P A      + D      A+                       ARG   + I    K
Sbjct: 129 RYNPLAD-----IADVIIKLRAVNTDYATIRRVEIQK---------ARG---VSI----K 167

Query: 284 IPVYFLGV 291
            PV+++ +
Sbjct: 168 KPVWYMAI 175


>gi|118431358|ref|NP_147777.2| adenylyl-sulfate kinase [Aeropyrum pernix K1]
 gi|150421535|sp|Q9YCR6|CYSC_AERPE RecName: Full=Probable adenylyl-sulfate kinase; AltName: Full=APS
           kinase; AltName: Full=ATP adenosine-5'-phosphosulfate
           3'-phosphotransferase; AltName:
           Full=Adenosine-5'-phosphosulfate kinase
 gi|116062682|dbj|BAA80181.2| adenylyl-sulfate kinase [Aeropyrum pernix K1]
          Length = 183

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           V+ + G+ G GKTT+  +L+  +   G +V +  GD  R+ 
Sbjct: 12  VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTT 52


>gi|108800760|ref|YP_640957.1| LAO/AO transport system ATPase [Mycobacterium sp. MCS]
 gi|119869899|ref|YP_939851.1| LAO/AO transport system ATPase [Mycobacterium sp. KMS]
 gi|126436375|ref|YP_001072066.1| LAO/AO transport system ATPase [Mycobacterium sp. JLS]
 gi|108771179|gb|ABG09901.1| LAO/AO transport system ATPase [Mycobacterium sp. MCS]
 gi|119695988|gb|ABL93061.1| LAO/AO transport system ATPase [Mycobacterium sp. KMS]
 gi|126236175|gb|ABN99575.1| LAO/AO transport system ATPase [Mycobacterium sp. JLS]
          Length = 290

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 77/225 (34%), Gaps = 46/225 (20%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNG---VGKTTVIGKLSKKMSDAGLKVMLAA------ 146
           L+  ++      +  PH   VVG+ G    GK+T +  L       GL+V + A      
Sbjct: 24  LVEGTRRDEVLAALAPHRARVVGLTGPPGAGKSTTVAALVTAYRQRGLRVAVLAVDPSSP 83

Query: 147 -------GDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDV 196
                  GD  R AA        +                 LA     A +   A   D+
Sbjct: 84  YSGGALLGDRIRMAA------HINDPDVLIRSVATRGHLGGLAAAVPAAIRLLAALAFDL 137

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF-HAV 255
           +I++T G   +           I +    DP      + VL+   G +A++  +     V
Sbjct: 138 IILETVGVGQSE----------IEIAAIADP-----TVVVLNPGAG-DAVQAAKAGLLEV 181

Query: 256 AGTTGLIMTKMDGTARGGGLIPIVVTHKIPV-YFLGV-GEGINDL 298
           A    +++ K D       +  +     +P+   +   GEG+ +L
Sbjct: 182 ADI--VVVNKADRDGADQTVRDLRGEVSVPILKLVAAQGEGVPEL 224


>gi|78065041|ref|YP_367810.1| chaperonin clpA/B/, ATPase [Burkholderia sp. 383]
 gi|77965786|gb|ABB07166.1| Chaperonin clpA/B/, ATPase [Burkholderia sp. 383]
          Length = 889

 Score = 37.5 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 16/148 (10%)

Query: 106 DFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWAD 163
           D +    V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK    
Sbjct: 615 DPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMVTINMSEYQEAHSVSGLK---- 669

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
                   S  G           +  +     V+++D   + H + + M         + 
Sbjct: 670 -------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGAMD 722

Query: 224 RLDPHAPH--SVLQVLDATTGQNALRQV 249
             +       + L +L +  G  A+ Q 
Sbjct: 723 DAEGREIDFRNTLIILTSNVGSTAVMQA 750


>gi|330981425|gb|EGH79528.1| general secretory pathway protein E [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 574

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 317 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 374


>gi|309366319|emb|CAP21602.2| CBR-PGP-12 protein [Caenorhabditis briggsae AF16]
          Length = 1360

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 18/132 (13%)

Query: 51  DLLIRSDIGVAVAQKIVEELLT------------KRYAKDVSVQRVLYDVSELIHKMLMP 98
            +L+ + +  A   ++++ +              K   + V         +    K+L  
Sbjct: 408 MVLLNARVAAATIYEVIDRVPEIDAYSNEGQKIDKIVGRVVFENVHFRYPTRKKAKVLNG 467

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           L+       S     + +VG +G GK+T +G L++       KVM+   +  R+  ID L
Sbjct: 468 LNLTIEPGTS-----VALVGHSGCGKSTSVGLLTRLYEQEDGKVMIDGHEV-RNLNIDWL 521

Query: 159 KIWADRTSADFV 170
           +        + +
Sbjct: 522 RKVVGIVQQEPI 533


>gi|300214120|gb|ADJ78536.1| Multidrug/protein/lipid ABC transporter family, ATP-binding and
           permease protein [Lactobacillus salivarius CECT 5713]
          Length = 607

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            L K FN + S    V  +VG  G GKTT+I  L +     G  + L   DT RS + ++
Sbjct: 383 QLMKDFNLNVSPGEKV-AIVGPTGAGKTTLINLLERFYDINGGSIKLDGRDT-RSMSREE 440

Query: 158 LKIW 161
           ++  
Sbjct: 441 IRSH 444


>gi|294790609|ref|ZP_06755767.1| ABC transporter, ATP-binding protein, HlyB family [Scardovia
           inopinata F0304]
 gi|294458506|gb|EFG26859.1| ABC transporter, ATP-binding protein, HlyB family [Scardovia
           inopinata F0304]
          Length = 645

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 56/212 (26%), Gaps = 42/212 (19%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT--FRSAAIDQLKIWADRTSADFVCSE 173
           VVG+NG GKTT I  L +        ++L   D   +R         + D  +   +  +
Sbjct: 431 VVGMNGSGKTTFIKLLCRLYDPTEGHILLNGIDIRKYR---------YQDYMNIFSIVFQ 481

Query: 174 IGSDAAALAYEAFKQAQAKKVDVL--IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                A    +    +     D +   +  AG     + L  G+         L      
Sbjct: 482 DFQLFAMPLGQNVATSTHYDRDKVMDCLVKAGFADRLASLPQGLD------TNLYKDLDK 535

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGT--------------TGLIMTKMDGTARGGGLIP 277
             + +      + A+      +  A                   I +K D  A     I 
Sbjct: 536 EGVNISGGEAQKIAI--ARALYKDAPFIVLDEPTAALDPVAEADIYSKFDEIAGRKTAIY 593

Query: 278 IVVTHKIPVYFLGVGEGINDLEPFVAKDFSAV 309
           I         F       +D+  F        
Sbjct: 594 ISHRLSS-CKFC------DDIAVFDQGRVVQK 618


>gi|239929848|ref|ZP_04686801.1| ion-transporting ATPase [Streptomyces ghanaensis ATCC 14672]
 gi|291438181|ref|ZP_06577571.1| ion-transporting ATPase [Streptomyces ghanaensis ATCC 14672]
 gi|291341076|gb|EFE68032.1| ion-transporting ATPase [Streptomyces ghanaensis ATCC 14672]
          Length = 488

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA----IDQLKIWADRT-SA 167
           +++  G  GVGKTT    L  + ++ G KV++   D  R  A    ID L     R    
Sbjct: 38  IVVCCGSGGVGKTTTAAALGLRAAERGRKVVVLTIDPARRLAQSMGIDSLDNIPRRVKGI 97

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           D                 F +      D
Sbjct: 98  DDSAGGELHAMMLDMKRTFDEIVEAHAD 125


>gi|239905449|ref|YP_002952188.1| shikimate kinase I [Desulfovibrio magneticus RS-1]
 gi|239795313|dbj|BAH74302.1| shikimate kinase I [Desulfovibrio magneticus RS-1]
          Length = 176

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            +P           + ++G+ G GKTT+ G L++++         A  DT R
Sbjct: 1   MEPTLLGRVSDERCVSLIGMAGAGKTTLAGLLARRL-------GWACLDTDR 45


>gi|167626624|ref|YP_001677124.1| chromosome partition protein A, ATPase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167596625|gb|ABZ86623.1| chromosome partition protein A, ATPase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 210

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT    ++  + + G KV +   D  +  A   +    D +   +   E       
Sbjct: 17  GSGKTTTAINIACGLKEQGYKVAIVDMDKDKPDAYMWMTKNNDASDFVYNLDEKNVREKV 76

Query: 181 LAYEAFKQAQAKKVDVLIIDT 201
           L          + +D ++IDT
Sbjct: 77  L-------ELKQHLDFVVIDT 90


>gi|220927042|ref|YP_002502344.1| MRP protein-like protein [Methylobacterium nodulans ORS 2060]
 gi|219951649|gb|ACL62041.1| MRP protein-like protein [Methylobacterium nodulans ORS 2060]
          Length = 374

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 112 HVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           HVI V  G  GVGK+T    L+  +   GLKV L   D +
Sbjct: 112 HVIAVASGKGGVGKSTTACNLALALKAQGLKVGLLDADIY 151


>gi|154761376|gb|ABS85538.1| dynein heavy chain 15 [Tetrahymena thermophila]
          Length = 1080

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 112 HVILVVGVNGVGKTTVIGKLSK 133
           H ++VVG+ G GKTT I  L+K
Sbjct: 276 HGVMVVGITGTGKTTNIHTLAK 297


>gi|116309138|emb|CAH66240.1| OSIGBa0145C02.5 [Oryza sativa Indica Group]
          Length = 357

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 84/264 (31%), Gaps = 48/264 (18%)

Query: 5   KVASESLSW-IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++    L+  + ++ +G  +    L   +  I+     D+   ++        D+G  + 
Sbjct: 28  EMEETKLNQHMERVIRGIEANEAYLVGMVLRIMEKGPEDETAEDD-------CDVGFHLQ 80

Query: 64  QKIV----------EELL-TKRYAKDVSVQRV-------LYDVSELIHKMLMPLSKP--F 103
           +KI+           +L        D +              + EL+  +++P+     F
Sbjct: 81  RKIIFRPIAGVVYPSKLKPGDLIGVDSTSNEHYCGIGGLEKQIEELVEAVVLPIIHKNCF 140

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
                H P  +L+ G  G GKT V    +   +                     LK+   
Sbjct: 141 QRLGIHPPKGVLLYGPPGTGKTLV----AHAFASQTNATF--------------LKLTGP 182

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           + +   +         A      K      +D   ID  G  H +S        ++ +L 
Sbjct: 183 QLAVKLIGEGARLVRDAFQLAKEKAPCIIFIDE--IDAIGSNHFDSGDREVQQTIVELLN 240

Query: 224 RLDPHAPHSVLQVLDATTGQNALR 247
           +LD    +  ++V+ AT     L 
Sbjct: 241 QLDGVGSYESIKVIAATNRPEVLD 264


>gi|115457548|ref|NP_001052374.1| Os04g0284600 [Oryza sativa Japonica Group]
 gi|38346432|emb|CAD40219.2| OSJNBa0019J05.17 [Oryza sativa Japonica Group]
 gi|113563945|dbj|BAF14288.1| Os04g0284600 [Oryza sativa Japonica Group]
 gi|215701044|dbj|BAG92468.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222628539|gb|EEE60671.1| hypothetical protein OsJ_14130 [Oryza sativa Japonica Group]
          Length = 357

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 84/264 (31%), Gaps = 48/264 (18%)

Query: 5   KVASESLSW-IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           ++    L+  + ++ +G  +    L   +  I+     D+   ++        D+G  + 
Sbjct: 28  EMEETKLNQHMERVIQGIEANEAYLVGMVLRIMEKGPEDETAEDD-------CDVGFHLQ 80

Query: 64  QKIV----------EELL-TKRYAKDVSVQRV-------LYDVSELIHKMLMPLSKP--F 103
           +KI+           +L        D +              + EL+  +++P+     F
Sbjct: 81  RKIIFRPIAGVVYPSKLKPGDLIGVDSTSNEHYCGIGGLEKQIEELVEAVVLPIIHKNCF 140

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
                H P  +L+ G  G GKT V    +   +                     LK+   
Sbjct: 141 QRLGIHPPKGVLLYGPPGTGKTLV----AHAFASQTNATF--------------LKLTGP 182

Query: 164 RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLK 223
           + +   +         A      K      +D   ID  G  H +S        ++ +L 
Sbjct: 183 QLAVKLIGEGARLVRDAFQLAKEKAPCIIFIDE--IDAIGSKHFDSGDREVQQTIVELLN 240

Query: 224 RLDPHAPHSVLQVLDATTGQNALR 247
           +LD    +  ++V+ AT     L 
Sbjct: 241 QLDGVGSYESIKVIAATNRPEVLD 264


>gi|158431287|pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
 gi|158431288|pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
          Length = 186

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           V+ + G+ G GKTT+  +L+  +   G +V +  GD  R+ 
Sbjct: 15  VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTT 55


>gi|8954036|gb|AAF82210.1|AC067971_18 Identical to fructose-6-phosphate
           2-kinase/fructose-2,6-bisphosphates from Arabidopsis
           thaliana gb|AF190739. It contains a
           6-phosphofructo-2-kinase domain PF|01591. ESTs
           gb|AA597674 and gb|AI995873 come from this gene
          Length = 726

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 65/226 (28%), Gaps = 50/226 (22%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV--- 170
           I++VG+   GKT    KL++ +   G          +R     +LK      SADF    
Sbjct: 327 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR-----RLK-HGVNMSADFFRAD 380

Query: 171 ---CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG----------- 216
                E  ++ AALA E       +   V I D          ++  +            
Sbjct: 381 NPEGVEARTEVAALAMEDMIAWMQEGGQVGIFDATNSTRVRRNMLMKMAEGKCKIIFLET 440

Query: 217 ---------KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
                    + IR+  +  P     +         ++ L   E  +        I   +D
Sbjct: 441 LCNDERIIERNIRLKIQQSPDYSEEMDFEAGVRDFRDRLANYEKVYEPVEEGSYI-KMID 499

Query: 268 GTARGGGLIPI-----------------VVTHKIPVYFLGVGEGIN 296
             +  GG I +                       P+     GE ++
Sbjct: 500 MVSGNGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESMD 545


>gi|84996863|ref|XP_953153.1| metallopeptidase [Theileria annulata strain Ankara]
 gi|65304149|emb|CAI76528.1| metallopeptidase, putative [Theileria annulata]
          Length = 691

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 22/178 (12%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +V E + +M+  L +P  +    +  P  IL+ G  G GKT     +++ ++        
Sbjct: 216 EVREELEEMIEYLKEPAKFSKLGAKLPKGILLAGSPGTGKT----LIARALASE------ 265

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
                   A +  +          FV                       +D L  D  G 
Sbjct: 266 --------AGVPFIHASGSEFEEMFVGVGARRIRDLFTTAKSISPCIVFIDEL--DAVGS 315

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
             ++    +    + ++L  LD  A H  + VL AT    +L    +       T  I
Sbjct: 316 RRSSMDHNSVRMTLNQLLVELDGFAKHEGIVVLCATNFPESLDPALVRPGRLDKTVYI 373


>gi|330889706|gb|EGH22367.1| general secretory pathway protein E [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 574

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 317 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 374


>gi|290473441|ref|YP_003466308.1| ATP-dependent zinc-metallo protease [Xenorhabdus bovienii SS-2004]
 gi|289172741|emb|CBJ79512.1| ATP-dependent zinc-metallo protease [Xenorhabdus bovienii SS-2004]
          Length = 638

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  F       P  IL+VG  G GKT     L+K ++        
Sbjct: 163 EAKEEVGELVEYLREPGRFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 218

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 219 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKSAPCIIF-IDEIDAVGR 262

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 263 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 308


>gi|187777834|ref|ZP_02994307.1| hypothetical protein CLOSPO_01426 [Clostridium sporogenes ATCC
           15579]
 gi|187774762|gb|EDU38564.1| hypothetical protein CLOSPO_01426 [Clostridium sporogenes ATCC
           15579]
          Length = 509

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L   +    +
Sbjct: 312 PENIIFNASNLIIGYNTPLSKPLNLKM-KRGQKIAITGANGIGKTTLIKTLLGLLKP--I 368

Query: 141 KVMLAAGDTFRSAAIDQ 157
              +   D  +    +Q
Sbjct: 369 NGEVTLSDYKKIGYFEQ 385


>gi|156743798|ref|YP_001433927.1| arginine/ornithine transport system ATPase [Roseiflexus
           castenholzii DSM 13941]
 gi|156235126|gb|ABU59909.1| LAO/AO transport system ATPase [Roseiflexus castenholzii DSM 13941]
          Length = 380

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 74/223 (33%), Gaps = 37/223 (16%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +    +    E++  +L           +         GV GVGK+T I  L   + +
Sbjct: 74  ESNAPAHMALAQEVLRALLPYTGGALRVGIT---------GVPGVGKSTFIEALGMMLCE 124

Query: 138 AGLKVMLAAGD----TFR---SAAIDQLKIWADRTSADFVCSEIGSDAAALA---YEAFK 187
            G +V + A D      R        +++  +   +A    S  G     +A    E   
Sbjct: 125 RGHRVAVLAVDPSSSISRGSILGDKTRMERLSRHPNAYIRPSPTGGSLGGVARKSRETLL 184

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A   D+++++T G   +   +                      L ++ A  G + L+
Sbjct: 185 LCEAAGFDIVLVETVGVGQSEIAVR---------------GMVDFFLLLMLAGAG-DELQ 228

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            ++          L++TK DG  R    +     +   + +L 
Sbjct: 229 GIKKGIIELA-DALLITKADGDNRA-RALAAQAEYTHALRYLT 269


>gi|71909615|ref|YP_287202.1| arginine/ornithine transport system ATPase [Dechloromonas aromatica
           RCB]
 gi|71849236|gb|AAZ48732.1| methylmalonyl-CoA mutase metallochaperone MeaB [Dechloromonas
           aromatica RCB]
          Length = 329

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 33/167 (19%)

Query: 64  QKIVEELLT---KRYAK-----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           Q +VE +L    +  AK     + +         ++++ +L           S       
Sbjct: 11  QTLVESVLAGQRRALAKAITLIESTRADHQQRAQQVLNALLPKTGNAVRIGIS------- 63

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVML-------------AAGDTFRSAAIDQLKIWA 162
             GV G GK+T I  L   + + G K+ +               GD  R   ++QL    
Sbjct: 64  --GVPGAGKSTFIEALGVWLIEQGKKLAVLAVDPSSSVSGGSILGDKTR---MEQLCQRE 118

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +        +      A    EA    +A   DV+II+T G   + +
Sbjct: 119 EAFIRPSPSAGSLGGVAEKTREAMLLCEAAGFDVIIIETVGVGQSET 165


>gi|46198603|ref|YP_004270.1| mrp protein [Thermus thermophilus HB27]
 gi|46196226|gb|AAS80643.1| mrp protein [Thermus thermophilus HB27]
          Length = 350

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             E+  +    +  P  +      HV+ V  G  GVGK+TV   L+  +S  G KV L  
Sbjct: 70  AEEVRVRFGGGVRPPERYALPGVKHVVAVASGKGGVGKSTVAANLALALSREGAKVGLLD 129

Query: 147 GDTF 150
            D +
Sbjct: 130 ADLY 133


>gi|55980623|ref|YP_143920.1| ATP-binding Mrp/Nbp35 family protein [Thermus thermophilus HB8]
 gi|55772036|dbj|BAD70477.1| ATP-binding protein, Mrp/Nbp35 family [Thermus thermophilus HB8]
          Length = 350

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             E+  +    +  P  +      HV+ V  G  GVGK+TV   L+  +S  G KV L  
Sbjct: 70  AEEVRVRFGGGVRPPERYALPGVKHVVAVASGKGGVGKSTVAANLALALSREGAKVGLLD 129

Query: 147 GDTF 150
            D +
Sbjct: 130 ADLY 133


>gi|32035169|ref|ZP_00135209.1| COG0542: ATPases with chaperone activity, ATP-binding subunit
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208559|ref|YP_001053784.1| chaperone ClpB [Actinobacillus pleuropneumoniae L20]
 gi|126097351|gb|ABN74179.1| chaperone ClpB [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 857

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 80/207 (38%), Gaps = 17/207 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++      I  L K       + +EG  + +   ++ +   EE+ ++L ++  G+ V+
Sbjct: 494 EKMSELQYGKIPALEKQLHEAVKREEEGSENQLLRTKVTE---EEIAEVLSKA-TGIPVS 549

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNG 121
            K++E    K    +  +   +   +E +  +   + +        +RP    L +G  G
Sbjct: 550 -KMMEGEKEKLLRMEEVLHSRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTG 608

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKT +   L+  + D    ++           ID  +     + +  V +  G      
Sbjct: 609 VGKTELCKTLANFLFDDPDAMVR----------IDMSEFMEKHSVSRLVGAPPGYVGYEE 658

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                + A+ +   V+++D   + H +
Sbjct: 659 GGYLTEAARRRPYSVVLLDEVEKAHPD 685


>gi|318058871|ref|ZP_07977594.1| ABC transporter [Streptomyces sp. SA3_actG]
 gi|318080031|ref|ZP_07987363.1| ABC transporter [Streptomyces sp. SA3_actF]
          Length = 635

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 9/106 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM----LMPLSKPFNWDFS 108
           LI+S  GVA A++I E L     + D +       +   +            KP   D S
Sbjct: 353 LIQS--GVASAERIFELLDADEQSADPAEPERPEKLRGRVAFEHVSFRYQEDKPLIEDLS 410

Query: 109 HRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                 H + +VG  G GKTT++  L +     G ++ L   D  R
Sbjct: 411 LEVDPGHTVAIVGPTGAGKTTLVNLLLRFYDVTGGRITLDGVDIAR 456


>gi|331242038|ref|XP_003333666.1| hypothetical protein PGTG_15088 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309312656|gb|EFP89247.1| hypothetical protein PGTG_15088 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 717

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 10/99 (10%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV-----AQKIVEELL 71
           + K  A T+ KLK+    + +  R+ + + +++   L++ D   ++        IV+EL 
Sbjct: 142 IDKSMAKTTAKLKKTFQTLEALDRISEDIHKKI---LLQED-NFSIYEIAFTDNIVKELK 197

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
            ++ +K + +        E   ++   + K         
Sbjct: 198 ERKISK-IDLNSWKSIAKEKTGRIRSGILKSLTSAERQS 235


>gi|257051006|sp|P70265|F262_MOUSE RecName: Full=6-phosphofructo-2-kinase/fructose-2,6-biphosphatase
           2; Short=6PF-2-K/Fru-2,6-P2ase 2; Short=PFK/FBPase 2;
           AltName: Full=6PF-2-K/Fru-2,6-P2ase heart-type isozyme;
           Includes: RecName: Full=6-phosphofructo-2-kinase;
           Includes: RecName: Full=Fructose-2,6-bisphosphatase
          Length = 519

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   + +      
Sbjct: 38  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYQSY------ 91

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 92  DFFRHDNEEAMKIRKQCALVALEDVKA 118


>gi|241666430|ref|NP_001155888.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 isoform 3
           [Mus musculus]
 gi|186969724|gb|ACC97555.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 variant 4
           [Mus musculus]
          Length = 497

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   + +      
Sbjct: 37  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYQSY------ 90

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 91  DFFRHDNEEAMKIRKQCALVALEDVKA 117


>gi|186969722|gb|ACC97554.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 variant 3
           [Mus musculus]
          Length = 196

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   + +      
Sbjct: 37  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYQSY------ 90

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 91  DFFRHDNEEAMKIRKQCALVALEDVKA 117


>gi|241666427|ref|NP_001155887.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 isoform 2
           [Mus musculus]
 gi|148707786|gb|EDL39733.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2, isoform
           CRA_a [Mus musculus]
 gi|148707788|gb|EDL39735.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2, isoform
           CRA_a [Mus musculus]
 gi|186969726|gb|ACC97556.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 variant 5
           [Mus musculus]
          Length = 473

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   + +      
Sbjct: 37  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYQSY------ 90

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 91  DFFRHDNEEAMKIRKQCALVALEDVKA 117


>gi|90021183|ref|YP_527010.1| fibronectin, type III [Saccharophagus degradans 2-40]
 gi|89950783|gb|ABD80798.1| ATPase AAA-2 [Saccharophagus degradans 2-40]
          Length = 897

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 72/206 (34%), Gaps = 19/206 (9%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            L      + +     L  +S+ +      LS P          V ++VG +GVGKT   
Sbjct: 576 SLEQTMEKRVIGQSHGLKLISKAVQTARAKLSDP-----KRPLGVFMLVGPSGVGKTETA 630

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L++++  +   + +     F+           +   +  + S  G           + 
Sbjct: 631 LTLAEQLYGSEQNMTVINMSEFK----------EEHKVSMLMGSPPGYVGYGEGGVLTEA 680

Query: 189 AQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
            + K   V+++D   + H    +         ++R  +  D    ++V+ ++ + T    
Sbjct: 681 VRRKPYSVVLLDEMEKAHPGVQDIFYQVFDKGILRDGEGRDIDFKNTVI-IMTSNTASAQ 739

Query: 246 LRQVEMFHAVAGTTGLIMTKMDGTAR 271
           + Q+ +          ++  ++GT R
Sbjct: 740 IEQLCIDPETKPEPKALLEAIEGTLR 765


>gi|34147045|ref|NP_032851.2| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 isoform 1
           [Mus musculus]
 gi|17390987|gb|AAH18418.1| Pfkfb2 protein [Mus musculus]
 gi|30048409|gb|AAH51014.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Mus
           musculus]
 gi|74145062|dbj|BAE27404.1| unnamed protein product [Mus musculus]
 gi|148707787|gb|EDL39734.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2, isoform
           CRA_b [Mus musculus]
 gi|148707789|gb|EDL39736.1| 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2, isoform
           CRA_b [Mus musculus]
          Length = 518

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   + +      
Sbjct: 37  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYQSY------ 90

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 91  DFFRHDNEEAMKIRKQCALVALEDVKA 117


>gi|26325594|dbj|BAC26551.1| unnamed protein product [Mus musculus]
          Length = 473

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   + +      
Sbjct: 37  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYQSY------ 90

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 91  DFFRHDNEEAMKIRKQCALVALEDVKA 117


>gi|1495704|emb|CAA67352.1| 6-phosphofructo-2-kinase /fructose-2,6-bisphosphatase [Mus
           musculus]
          Length = 519

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   + +      
Sbjct: 38  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYQSY------ 91

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 92  DFFRHDNEEAMKIRKQCALVALEDVKA 118


>gi|328544609|ref|YP_004304718.1| LAO/AO transporter kinase, argK family [polymorphum gilvum
           SL003B-26A1]
 gi|326414350|gb|ADZ71413.1| Putative LAO/AO transport system kinase, argK family [Polymorphum
           gilvum SL003B-26A1]
          Length = 348

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 10/118 (8%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAI---- 155
                F+ + H + + GV GVGK+T I  L   ++ AG +V + A D  + R+       
Sbjct: 66  QLLLPFTGKAHRVGITGVPGVGKSTTIDTLGSNLTAAGHRVAVLAVDPSSTRTGGSILGD 125

Query: 156 -DQLKIWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNS 209
             +++  A   +A    S        +A    E     +A   DV++++T G   + +
Sbjct: 126 KTRMERLATDPNAFIRPSPSAGTLGGVAAKTRETMLLCEAAGFDVILVETVGIGQSET 183


>gi|315426309|dbj|BAJ47950.1| hypothetical protein HGMM_F02G05C18 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 448

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 14/132 (10%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
             V     +V  +    Y             SE +   +  + +     +   P V+ VV
Sbjct: 203 FAVETIMSLVATVAG-VYGVTRVSGLRKRGESETVLTGVEGIDREIGLMY---PSVVAVV 258

Query: 118 GVNGVGKTTVIGKL-SKKMSDAGLKVMLAAGDTF-----RSAA----IDQLKIWADRTSA 167
           G +G G++T++ +L + ++S     VML+  DT      R A     +++L+        
Sbjct: 259 GPSGSGRSTLLARLSAHRLSAGDGVVMLSLHDTVEELRSRLAGLGCDVERLEQEGKLVLL 318

Query: 168 DFVCSEIGSDAA 179
             + S   +   
Sbjct: 319 TSIPSSDNTRHY 330


>gi|311067311|ref|YP_003972234.1| putative ABC transporter ATP-binding protein [Bacillus atrophaeus
           1942]
 gi|310867828|gb|ADP31303.1| putative ABC transporter (ATP-binding protein) [Bacillus atrophaeus
           1942]
          Length = 605

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSD 137
           I  VG  G GKTTV   L++    
Sbjct: 395 IAFVGPTGAGKTTVTNLLARFYEP 418


>gi|301757127|ref|XP_002914392.1| PREDICTED: antigen peptide transporter 2-like [Ailuropoda
           melanoleuca]
          Length = 703

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L      +G +++L          + Q
Sbjct: 484 PVLKGLTFTLRPG-QVTALVGPNGSGKSTVAALLQNLYQPSGGRLLLDG------QPLSQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAAL 181
            +          V  E    + ++
Sbjct: 537 YEHRYLHRQVTSVGQEPVLFSGSV 560


>gi|281338482|gb|EFB14066.1| hypothetical protein PANDA_002295 [Ailuropoda melanoleuca]
          Length = 686

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L      +G +++L          + Q
Sbjct: 484 PVLKGLTFTLRPG-QVTALVGPNGSGKSTVAALLQNLYQPSGGRLLLDG------QPLSQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAAL 181
            +          V  E    + ++
Sbjct: 537 YEHRYLHRQVTSVGQEPVLFSGSV 560


>gi|296084615|emb|CBI25636.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 35/114 (30%)

Query: 26  LKLKEGITDI------ISSRRLDDGVREE-------LEDLLIRSDIGVAVAQKIVEELLT 72
            K+ E I  I      I+ RRLD  +RE        +E+ L            +V+E  +
Sbjct: 49  KKMGEKINKITRELDAIAKRRLDFHLREGVGGVSFGIEERL--------PTTSLVDE--S 98

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           + + +D + ++       +I  ML   +   +     +  VI +VG+ G+GKTT
Sbjct: 99  RIHGRDANKEK-------IIELMLSDEATQLD-----KISVISIVGMGGIGKTT 140


>gi|257485378|ref|ZP_05639419.1| general secretion pathway protein GspE [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 404

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 317 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 374


>gi|262202348|ref|YP_003273556.1| LAO/AO transporter ATPase [Gordonia bronchialis DSM 43247]
 gi|262085695|gb|ACY21663.1| LAO/AO transport system ATPase [Gordonia bronchialis DSM 43247]
          Length = 343

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 31/183 (16%)

Query: 36  ISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
           ++ RR+D    + LE  ++ +D    +A+ I           + +         EL+ ++
Sbjct: 14  VARRRID---IDALEQAVL-ADSRADLARAIT--------LVESTRPDHRAAAQELLLRL 61

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSA 153
                K F    +         GV GVGK+T I  L   + + G KV + A D  + R+ 
Sbjct: 62  TPHAGKSFRVGIT---------GVPGVGKSTTIEALGMHLIEQGHKVAVLAVDPSSTRTG 112

Query: 154 A-IDQLKIWADRTSAD----FVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRL 205
             I   K    R S D       S        +A    E+    +A   DV++++T G  
Sbjct: 113 GSILGDKTRMGRLSVDKNAYIRPSPTSGTLGGVAKATRESIVLVEAAGFDVVLVETVGVG 172

Query: 206 HNN 208
            + 
Sbjct: 173 QSE 175


>gi|167747676|ref|ZP_02419803.1| hypothetical protein ANACAC_02397 [Anaerostipes caccae DSM 14662]
 gi|239625013|ref|ZP_04668044.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|167653038|gb|EDR97167.1| hypothetical protein ANACAC_02397 [Anaerostipes caccae DSM 14662]
 gi|239521399|gb|EEQ61265.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 270

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           P S+  +    H+  ++ V G  G GKTTV  K++K +++    V+L   D
Sbjct: 13  PESEEVHEVGKHQAQILAVWGSPGCGKTTVSVKIAKHLAEKKKNVILVLSD 63


>gi|154336847|ref|XP_001564659.1| dynein heavy chain [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134061694|emb|CAM38725.1| putative dynein heavy chain [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 4242

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 71/180 (39%), Gaps = 20/180 (11%)

Query: 21   FASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDI--GVAVAQKIVEELLT--KRY 75
                S  L + +  + +S    DD V   L + L+ SDI  GV V +   E+L    +  
Sbjct: 1859 LQKESEILIKSLRVNTLSKLTFDDAV---LFNSLL-SDIFPGVPVLEIHYEKLRPAIEES 1914

Query: 76   AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             K++ +Q V   + +++            ++   +   +++VG +G GK+T++  L   +
Sbjct: 1915 IKELKLQVVETQIQKILQL----------YEALRQRMGVVLVGPSGSGKSTLVKVLRHAL 1964

Query: 136  SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
               G  V L   +  ++   DQL    D  + ++    +   A  +  E          D
Sbjct: 1965 QRLGKMVPLYIVNP-KALPRDQLLGHMDPDTREWFDGVLTDAAKKVVKEETSVQSWIFCD 2023


>gi|116253422|ref|YP_769260.1| ATP-binding component of ABC transporter [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115258070|emb|CAK09170.1| putative ATP-binding component of ABC transporter [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 581

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 74  RYAKDVSVQRVLYDVSEL--IHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGK 130
             A++ +    +  V E   + K     +   N  F   R  +  ++G NG GK+T    
Sbjct: 319 AEAQEPTKGDDIRPVIEAKGLTKRFSDFTAADNISFDIRRGEIFGLLGPNGAGKSTTFKM 378

Query: 131 LSKKMSDAGLKVMLAAGDTFR--SAAIDQL 158
           L   +   G +  +A  D  R  + A +QL
Sbjct: 379 LCGLLKPTGGEGRVAGFDLRRDSAEARNQL 408


>gi|92109430|ref|YP_571718.1| cobyrinic acid a,c-diamide synthase [Nitrobacter hamburgensis X14]
 gi|91802512|gb|ABE64886.1| Cobyrinic acid a,c-diamide synthase [Nitrobacter hamburgensis X14]
          Length = 407

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 112 HVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            VI VV    G GKTT    L++ ++  G +V+    D
Sbjct: 124 QVIAVVNFKGGSGKTTTAAHLAQHLTLQGYRVLAVDLD 161


>gi|66362576|ref|XP_628254.1| Prp16p pre-mRNA splicing factor. HrpA family SFII helicase
           [Cryptosporidium parvum Iowa II]
 gi|46229729|gb|EAK90547.1| Prp16p pre-mRNA splicing factor. HrpA family SFII helicase
           [Cryptosporidium parvum Iowa II]
          Length = 1042

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 17/87 (19%)

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
            +Y V + + K++                V++VVG  G GKTT   +L++ + + G    
Sbjct: 320 PVYKVRDSLIKLIGEHM------------VVVVVGETGSGKTT---QLTQYLHEFGYSKR 364

Query: 144 LAAGDTF--RSAAIDQLKIWADRTSAD 168
              G T   R AA+   +  AD  + D
Sbjct: 365 GIIGCTQPRRVAAVSVAQRVADEMNVD 391


>gi|332702047|ref|ZP_08422135.1| type II secretion system protein E [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552196|gb|EGJ49240.1| type II secretion system protein E [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 566

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 61/170 (35%), Gaps = 13/170 (7%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
           YD+ +L   ML           +    +ILV G  G GKTT +      +          
Sbjct: 296 YDLEQL--GMLGEDQDRLKAACARPHGLILVAGPTGSGKTTTLY---AMLRLINTPEANV 350

Query: 146 AG--DT--FRSAAID--QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
               D   +R A I   QL   A  T A  + S +  D   +     + A+   + V   
Sbjct: 351 ITLEDPVEYRIAGIRQVQLNRKAGMTFASGLRSILRQDPDVIMVGEIRDAETAAIAVQAA 410

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            T  R+ ++       G + R+L       P  V  VL A  GQ  LR+V
Sbjct: 411 LTGHRVLSSVHTNDASGAITRLLDMGIE--PFLVSSVLLAAVGQRLLRRV 458


>gi|331082066|ref|ZP_08331194.1| hypothetical protein HMPREF0992_00118 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405661|gb|EGG85191.1| hypothetical protein HMPREF0992_00118 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 555

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 43/99 (43%), Gaps = 16/99 (16%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD--VSELIHKMLMPLSKPFNWDFSHRP 111
           I++D        + E +  +  +  + +   L +  ++++  K++   ++ F        
Sbjct: 245 IQAD----TVGDLNERITKEGASNLILIAEALQEAKIAQIAKKIVEAGNRKF-------- 292

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
             I++ G +  GKTT   +LS ++S  G+K      D +
Sbjct: 293 --IMIAGPSSSGKTTFSHRLSIQLSAQGMKPHPIGVDNY 329


>gi|308321220|gb|ADO27762.1| gpn-loop GTPase 1 [Ictalurus furcatus]
          Length = 398

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            KP   +   +P  ++V+G+ G GKTT + +L+  +        +   D
Sbjct: 31  GKPSGNNAEQKPVCLIVLGMAGSGKTTFVQRLTAYLHSKKSPPYVINLD 79


>gi|291538116|emb|CBL11227.1| ATPase components of ABC transporters with duplicated ATPase
           domains [Roseburia intestinalis XB6B4]
          Length = 518

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  + +++  +L+     PLSKP N     R   I +VG NG+GKTT
Sbjct: 320 TPGKYIFETKDLVIGYDEPLSKPLNISME-RGQKIALVGANGIGKTT 365


>gi|240144983|ref|ZP_04743584.1| ABC transporter, ATP-binding protein [Roseburia intestinalis L1-82]
 gi|257202932|gb|EEV01217.1| ABC transporter, ATP-binding protein [Roseburia intestinalis L1-82]
 gi|291535318|emb|CBL08430.1| ATPase components of ABC transporters with duplicated ATPase
           domains [Roseburia intestinalis M50/1]
          Length = 518

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  + +++  +L+     PLSKP N     R   I +VG NG+GKTT
Sbjct: 320 TPGKYIFETKDLVIGYDEPLSKPLNISME-RGQKIALVGANGIGKTT 365


>gi|229816819|ref|ZP_04447101.1| hypothetical protein BIFANG_02067 [Bifidobacterium angulatum DSM
           20098]
 gi|229785835|gb|EEP21949.1| hypothetical protein BIFANG_02067 [Bifidobacterium angulatum DSM
           20098]
          Length = 609

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 24/167 (14%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSAAIDQLKIWADRT----- 165
           I +VG  G GKTT++  L +    +G  + +   DT    R    DQ  +    T     
Sbjct: 399 IAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFHG 458

Query: 166 ----SADFVCSEIGSDAAALAYEAFKQAQA-----KKVDVLIIDTAGRLHNNSILMAGIG 216
               +  +    +  +    A +A              D ++ D        + L  G  
Sbjct: 459 TVRENIAYSKPGVTDEQIINACKAVGLHHYIMSLPNGYDTVLDD-------RTSLSQGQK 511

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           +++ + + +   AP  +L    ++        ++             
Sbjct: 512 QLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSF 558


>gi|182411835|ref|YP_001816901.1| ATP-dependent helicase HrpA [Opitutus terrae PB90-1]
 gi|177839049|gb|ACB73301.1| ATP-dependent helicase HrpA [Opitutus terrae PB90-1]
          Length = 1566

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 17/137 (12%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
               V+++ G  G GKTT I K+    +  G    +A     R AA+   +  A+  +  
Sbjct: 53  QANAVVILAGETGSGKTTQIPKMC-LAAGRGTHGRIACTQPRRVAALSVSRRVAEEMNVT 111

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLD 226
           +          +              D    DT  +   + +L+A +    ++R    + 
Sbjct: 112 WGREVGCKIRFS--------------DETTRDTVVKFLTDGMLLAEVQGDPLLRDYDTII 157

Query: 227 PHAPHSVLQVLDATTGQ 243
               H     +D   G 
Sbjct: 158 IDEAHERSLNIDFLLGH 174


>gi|75676669|ref|YP_319090.1| putative ABC transporter ATP-binding protein [Nitrobacter
           winogradskyi Nb-255]
 gi|74421539|gb|ABA05738.1| ABC transporter, ATPase subunit [Nitrobacter winogradskyi Nb-255]
          Length = 550

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 17/105 (16%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPF-------NWDFSHRPHVIL-V 116
           EELL K   K     +++  VSE +   +     LSK F       +  F   P  I+ V
Sbjct: 290 EELLAKASEKQTQTAQIIIPVSERLGANVVDFEGLSKSFGDRLLIDDLTFKLPPGGIVGV 349

Query: 117 VGVNGVGKTTVIGKLSKKMSDA--GLKVMLAAGDTFRSAAIDQLK 159
           +G NG GKTT+     + ++      K  +  G+T +   +DQ +
Sbjct: 350 IGPNGAGKTTLF----RMITGQETPDKGTITVGETVQLGYVDQSR 390


>gi|307260464|ref|ZP_07542159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869867|gb|EFN01649.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 500

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGV-GKTTVIGKLSKKMSDAGLKVMLAAG--- 147
           + ++L  ++  F  + S +     +VGV G  GKTT    L++  +  G K  +      
Sbjct: 97  LARILSEIAGAFYANPSEKLT---LVGVTGTNGKTTSAQLLAQWHNLLGGKSAVMGTIGN 153

Query: 148 ----DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDT 201
                   +A      I   R  ADFV       A  ++     Q  A+A   D+ +   
Sbjct: 154 GLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEALSYDLAVFTN 213

Query: 202 AGRLHNNSILMAGI 215
             R H +       
Sbjct: 214 LSRDHLDYHKTMEE 227


>gi|300121911|emb|CBK22485.2| unnamed protein product [Blastocystis hominis]
          Length = 262

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ILV G +GVGKTT+I KL   M +   +       T R       K   +R   D+  + 
Sbjct: 58  ILVCGPSGVGKTTLIKKL---MQNYPDRFGFCVSHTTRP------KRKGERNGIDYHFTT 108

Query: 174 IGSDAAAL 181
                  +
Sbjct: 109 PEIIQKEI 116


>gi|292669948|ref|ZP_06603374.1| LAO/AO transport system ATPase [Selenomonas noxia ATCC 43541]
 gi|292648419|gb|EFF66391.1| LAO/AO transport system ATPase [Selenomonas noxia ATCC 43541]
          Length = 312

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRT--- 165
           +V+ + G  G GK+T+  K++K+    G  V + A D    F   AI   +I  +     
Sbjct: 44  YVLGITGPPGAGKSTMTDKIAKEYRKRGKTVGIIAVDPTSPFSGGAILGDRIRMNDLTLD 103

Query: 166 -SADFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNN 208
                           L++   +A K   A   DV+ ++T G   + 
Sbjct: 104 EGVFIRSMGTRGSLGGLSHKTADAVKVMDAFGKDVIFVETVGVGQSE 150


>gi|238880937|gb|EEQ44575.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 875

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           Q+ + +    +   ++P ++      +++  +I++ G  G GK T + K
Sbjct: 692 QKSITEAKTNVSTKMVPSNESIQVSKNNKSPIIMLAGPPGTGK-TSLAK 739


>gi|168704817|ref|ZP_02737094.1| cell division protein FtsH [Gemmata obscuriglobus UQM 2246]
          Length = 693

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 26/186 (13%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E+   +   +DV+           +   L   +K F    +  P  +L+VG  G GKT  
Sbjct: 202 EKGKGRVTFEDVAGMESAKRELTEMVDYLKDPAK-FTRVGATVPKGVLLVGPPGTGKT-- 258

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-DFVCSEIGSDAAALAYEAF 186
              L+K ++        A   +       Q+ +    +   D   +        +  +  
Sbjct: 259 --LLAKAVAGEANVPFFAISGS----EFIQMFVGVGASRVRDMFRTAKEHSPCVIFIDE- 311

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                       ID  GR+               + ++L  +D   P   + V+ AT   
Sbjct: 312 ------------IDAVGRMRGAGYGGGSDEREQTLNQILSEMDGFQPSETVIVMAATNRP 359

Query: 244 NALRQV 249
           + L   
Sbjct: 360 DVLDAA 365


>gi|254828793|ref|ZP_05233480.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258601203|gb|EEW14528.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
          Length = 213

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 17/125 (13%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
           +P  I+ +GV GVGKTT I K+                 +F+S A D++K    +   ++
Sbjct: 32  KPSFIMFIGVPGVGKTT-ISKI------------FETNYSFKSIATDEIKYNLQQMGIEY 78

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                  D   +    F +    +V+++    + +     IL+    +   + K +    
Sbjct: 79  ----TIEDLFDIQKLMFMKLAEYRVNIISDSNSAKNWQREILINFCKRYRYIFKIVYLTC 134

Query: 230 PHSVL 234
              +L
Sbjct: 135 EREIL 139


>gi|254303480|ref|ZP_04970838.1| possible S14 family endopeptidase ClpA [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323672|gb|EDK88922.1| possible S14 family endopeptidase ClpA [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 616

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV-VGVNGV 122
           ++I EEL  +   +D ++ +    V ++I +     S   +     +P   L  VG  GV
Sbjct: 299 ERIEEELGKRVKGQDTAISK----VKDVIIRAYTGFSGLQHSSKQKKPKGTLFFVGPTGV 354

Query: 123 GKT 125
           GKT
Sbjct: 355 GKT 357


>gi|78211954|ref|YP_380733.1| MRP protein-like [Synechococcus sp. CC9605]
 gi|78196413|gb|ABB34178.1| MRP protein-like [Synechococcus sp. CC9605]
          Length = 358

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 58/194 (29%), Gaps = 25/194 (12%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G  GVGK+TV   L+  ++  GL+V L   D +   A   L +            +    
Sbjct: 112 GKGGVGKSTVAVNLACALAQTGLRVGLLDADIYGPNAPTMLGVADQTPEVQGSGDQQRIV 171

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV- 236
                  A         D   +   G +         +  +IR            VL V 
Sbjct: 172 PIETCGIAMVSMGLLIDDHQPVIWRGPM---------LNGIIRQFLYQAEWGERDVLIVD 222

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMD-----GTARGGGLIPIVVTHKIPVYFLGV 291
           L   TG   L             G+++           AR G  + +     IPV  LGV
Sbjct: 223 LPPGTGDAQLSLA----QAVPMAGVVIVTTPQQVSLQDARRG--LAMFRQMGIPV--LGV 274

Query: 292 GEGINDLEPFVAKD 305
            E ++   P     
Sbjct: 275 VENMSAFIP--PDR 286


>gi|71413249|ref|XP_808772.1| small GTP-binding protein [Trypanosoma cruzi strain CL Brener]
 gi|70873045|gb|EAN86921.1| small GTP-binding protein, putative [Trypanosoma cruzi]
 gi|322828067|gb|EFZ32009.1| small GTP-binding protein, putative [Trypanosoma cruzi]
          Length = 194

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLS 132
             FS++   IL +G++  GKTT++GKL+
Sbjct: 14  LGFSNKTGKILFLGLDNAGKTTLLGKLA 41


>gi|303256179|ref|ZP_07342195.1| mrP protein [Burkholderiales bacterium 1_1_47]
 gi|331001235|ref|ZP_08324861.1| mrp family protein [Parasutterella excrementihominis YIT 11859]
 gi|302860908|gb|EFL83983.1| mrP protein [Burkholderiales bacterium 1_1_47]
 gi|329568962|gb|EGG50758.1| mrp family protein [Parasutterella excrementihominis YIT 11859]
          Length = 357

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 10/135 (7%)

Query: 22  ASTSLKLKEGI-----TDIISSRRLDDGVREELEDLL-IRSDIGVAVAQKIVEELLTKRY 75
                 L   I      D++SS+ L     E+ +  + I  D        ++EE++ +  
Sbjct: 3   EKIREVLSGVIDPNTGKDLVSSKALKKVTTEDGKTTVQIELDYPAKTQGSVIEEMV-RAK 61

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             +  +   +     +I   +    K F+   S R  + +  G  GVGK+TV   L+  +
Sbjct: 62  LVEAGIPADVKISQNIIAHEVQRGVKVFD---SVRNIIAVSSGKGGVGKSTVSANLALAL 118

Query: 136 SDAGLKVMLAAGDTF 150
              G KV L   D +
Sbjct: 119 QQEGAKVGLLDADVY 133


>gi|291528743|emb|CBK94329.1| Alpha-galactosidase [Eubacterium rectale M104/1]
          Length = 946

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 14/166 (8%)

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           +   + LYD  + +   L           S +  VI + G +G GKTT+   L +   + 
Sbjct: 720 LDEAKKLYDEIKKVCGNLKLSEADTADSSSDKRIVISIYGGSGSGKTTIAAALQQYFLND 779

Query: 139 GLKVMLAAGDTF--RSAAIDQLKIWADRTSADFVCSE-----IGSDAAALAYEAFKQ--- 188
                +  GD +  R      ++   +R +      E            + ++   +   
Sbjct: 780 NTACYVLTGDNYPHRIP----MRNDEERLNVYNESGEDGLRGYLGTPEEIDFDRINKELS 835

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
                 D++ I   GR   +          I+VL     H     L
Sbjct: 836 EFKAGKDIIEIKHMGREDGDISYDETDFTGIKVLILEWTHGGSEYL 881


>gi|262166581|ref|ZP_06034318.1| adenylylsulfate kinase [Vibrio mimicus VM223]
 gi|262026297|gb|EEY44965.1| adenylylsulfate kinase [Vibrio mimicus VM223]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             RP V+   G++G GK+TV G L  ++++ G    L  GD  R  
Sbjct: 29  EQRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVRHG 74


>gi|255635299|gb|ACU18003.1| unknown [Glycine max]
          Length = 405

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 28/152 (18%)

Query: 80  SVQRVLYDVSELIHKMLMPL------SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           S  +      E + + +  L      S   + +   +P +ILVVG+ G GKTT++ +L  
Sbjct: 23  SGAQAKDKEKEELTEKMNKLHIEGSSSGSGSSNIRRKPVIILVVGMAGSGKTTLMHRLVC 82

Query: 134 KMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA-------- 185
                 ++  +   D     A+  L   A+    D V  +       L            
Sbjct: 83  HTHLKDIRGYVMNLD----PAVMTLPYAANIDVRDTVKYKEVMKQFNLGPNGGILTSLNL 138

Query: 186 ----------FKQAQAKKVDVLIIDTAGRLHN 207
                       + +A ++D +++DT G++  
Sbjct: 139 FATKFDEVISVIEKRADQLDYVLVDTPGQIEI 170


>gi|251792626|ref|YP_003007352.1| ATP-dependent metallopeptidase HflB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534019|gb|ACS97265.1| ATP-dependent metallopeptidase HflB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 649

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 27/167 (16%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  IL+VG  G GKT     L+K ++        
Sbjct: 160 EAKEEVAEIVDFLREPKKFQNLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 215

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QAKKVDVLIIDTAG 203
               +                  +       S    +  +A K A     +D   ID  G
Sbjct: 216 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCLIFIDE--IDAVG 258

Query: 204 RLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           R     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 RQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLD 305


>gi|238787588|ref|ZP_04631386.1| Cell division protease ftsH [Yersinia frederiksenii ATCC 33641]
 gi|238724375|gb|EEQ16017.1| Cell division protease ftsH [Yersinia frederiksenii ATCC 33641]
          Length = 607

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 122 EAKEEVSELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 177

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 178 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 221

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 222 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 267


>gi|225465962|ref|XP_002269685.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1290

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 34/124 (27%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREE-------LEDLLIRSDIGVAV 62
           +LS+ +K+ +     + +L     D I+ RRLD  +RE        +E+ L         
Sbjct: 119 ALSFNKKMGEKIKKITREL-----DAIAKRRLDLPLREGVGGVSFGMEERL-------QT 166

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
              +VE    + + +D        D  +++  ML   +         R  V  +VG+ G+
Sbjct: 167 TSSVVES---RIHGRD-------ADKEKIVELMLSNEATG-----GDRVSVFSIVGMGGI 211

Query: 123 GKTT 126
           GKTT
Sbjct: 212 GKTT 215


>gi|222624736|gb|EEE58868.1| hypothetical protein OsJ_10467 [Oryza sativa Japonica Group]
          Length = 1067

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA--AIDQLKIWADRTSADFVC 171
           I++VG+   GKT    KL++ +   G +        +R     I+Q   +    + + V 
Sbjct: 660 IVLVGLPARGKTFTAAKLTRYLRWLGHETKHFNVGKYRRLKHGINQTADFFRGDNKEGV- 718

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            E  ++ AALA E       +   V I D      N   ++  + +  
Sbjct: 719 -EARNEVAALAMEDMLSWMQEGGQVGIFDATNSTRNRRNMLMKMAEGK 765


>gi|186969728|gb|ACC97557.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 variant 6
           [Mus musculus]
          Length = 374

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           ++ P +I+++G+   GKT V  KL++ ++  G+   +     +R  A+   + +      
Sbjct: 37  TNSPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYQSY------ 90

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKV 194
           DF   +           A    +  K 
Sbjct: 91  DFFRHDNEEAMKIRKQCALVALEDVKA 117


>gi|78043822|ref|YP_358912.1| putative ATP-dependent protease La [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995937|gb|ABB14836.1| putative ATP-dependent protease La [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 632

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 35/128 (27%)

Query: 28  LKEGITDIISSRRLDDGV---------------REELED-LLIRSDIGVAVAQKI----- 66
           +++ I DI++ R +++ +                EE+   +L  S   V  AQ +     
Sbjct: 84  IEDHIADILARRTVEEDLERKVERKMQERHEEYLEEIRRQVLKESG-NVENAQTLKKLAR 142

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL------IHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           +E+L   + A            SE+      I  +L  LS PF       P  IL+ G  
Sbjct: 143 LEKLEETKIAATAMSFLRPRSFSEIVGQERAIRALLAKLSSPF-------PQHILLYGPP 195

Query: 121 GVGKTTVI 128
           GVGKTT  
Sbjct: 196 GVGKTTAA 203


>gi|27468566|ref|NP_765203.1| vga protein [Staphylococcus epidermidis ATCC 12228]
 gi|293367725|ref|ZP_06614374.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27316113|gb|AAO05247.1|AE016749_193 vga protein [Staphylococcus epidermidis ATCC 12228]
 gi|291318064|gb|EFE58461.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736879|gb|EGG73143.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis
           VCU045]
          Length = 644

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 22/185 (11%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-KKMS 136
           D +    +  + +L      P++ P N +     H I ++G NGVGKTT+I  ++ K+  
Sbjct: 323 DRNTGNDVMHIHDLKIGYDSPITLPINLEIFKGDH-IAIIGPNGVGKTTLIKTIAEKQHK 381

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIW--ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             G  +  A     +    DQ +    +++T  D+V  +              +    + 
Sbjct: 382 LGGQIIFGANL---QIGYYDQKQAEFKSNKTILDYVWDQYPHMNEKDVRAVLGRFLFVQE 438

Query: 195 DVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG-----QNALRQV 249
           DV  I         + L   +  + R           +VL + + T       +  L Q 
Sbjct: 439 DVKKIINDLSGGEKARLQLALLMLQR----------DNVLILDEPTNHLDIDSKEMLEQA 488

Query: 250 EMFHA 254
                
Sbjct: 489 LKDFE 493


>gi|47212805|emb|CAF96180.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 466

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 21/131 (16%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +   L          F++ P +I++VG+   GKT +  KL++ ++  G+   +     +R
Sbjct: 18  MKSRLSQRRGSSVPQFTNSPTMIVMVGLPARGKTYISKKLTRYLNWIGVTTKVFNIGQYR 77

Query: 152 ---SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD--------VLIID 200
              + + +  +                 +A  +       A     D        V++ D
Sbjct: 78  RDAAGSYNSFE----------FFKPDNMEAMKIRKACVLSALKDVCDYFTIGMGQVVVFD 127

Query: 201 TAGRLHNNSIL 211
                 +   L
Sbjct: 128 ATNTTADRRDL 138


>gi|32470159|ref|NP_863383.1| hypothetical protein R64_p028 [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|20521527|dbj|BAB91591.1| arsenite-activating ATPase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 585

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 25/159 (15%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ++ +G  GVGKTTV   ++  ++  G KV L   D    AA     +     +      +
Sbjct: 331 VMTMGKGGVGKTTVAASVAVSLAKRGHKVHLTTSD---PAAHLSYTLDGSLPNLQVSRID 387

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI-------RVLKRLD 226
              +         +           +D  G       L +   + I       R++K  D
Sbjct: 388 PKVETERYRRFVLENQGKG------LDAEGLAVLEEDLRSPCTEEIAVFQAFSRIIKEAD 441

Query: 227 PHAPH-------SVLQVLDAT--TGQNALRQVEMFHAVA 256
            H            L +LDAT    +  +RQ+   H   
Sbjct: 442 DHFVIMDTAPTGHTLLLLDATGAYHREMVRQMGQTHDHV 480


>gi|89072569|ref|ZP_01159141.1| putative cell division protein FtsH [Photobacterium sp. SKA34]
 gi|89051673|gb|EAR57126.1| putative cell division protein FtsH [Photobacterium sp. SKA34]
          Length = 651

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 160 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 213

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 214 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 257

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 258 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 306


>gi|302518877|ref|ZP_07271219.1| lipid A export permease/ATP-binding protein MsbA [Streptomyces sp.
           SPB78]
 gi|302427772|gb|EFK99587.1| lipid A export permease/ATP-binding protein MsbA [Streptomyces sp.
           SPB78]
          Length = 642

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 9/106 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM----LMPLSKPFNWDFS 108
           LI+S  GVA A++I E L     + D +       +   +            KP   D S
Sbjct: 360 LIQS--GVASAERIFELLDADEQSADPAEPERPEKLRGRVAFEHVSFRYQEDKPLIEDLS 417

Query: 109 HRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                 H + +VG  G GKTT++  L +     G ++ L   D  R
Sbjct: 418 LEVDPGHTVAIVGPTGAGKTTLVNLLLRFYDVTGGRITLDGVDIAR 463


>gi|333027300|ref|ZP_08455364.1| putative lipid A export permease/ATP-binding protein MsbA
           [Streptomyces sp. Tu6071]
 gi|332747152|gb|EGJ77593.1| putative lipid A export permease/ATP-binding protein MsbA
           [Streptomyces sp. Tu6071]
          Length = 635

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 9/106 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM----LMPLSKPFNWDFS 108
           LI+S  GVA A++I E L     + D +       +   +            KP   D S
Sbjct: 353 LIQS--GVASAERIFELLDADEQSADPAEPERPEKLRGRVAFEHVSFRYQEDKPLIEDLS 410

Query: 109 HRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                 H + +VG  G GKTT++  L +     G ++ L   D  R
Sbjct: 411 LEVDPGHTVAIVGPTGAGKTTLVNLLLRFYDVTGGRITLDGVDIAR 456


>gi|260771179|ref|ZP_05880106.1| cell division protein FtsH [Vibrio furnissii CIP 102972]
 gi|260613776|gb|EEX38968.1| cell division protein FtsH [Vibrio furnissii CIP 102972]
          Length = 652

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 159 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 212

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 213 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 256

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 257 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 305


>gi|238750120|ref|ZP_04611623.1| Cell division protease ftsH [Yersinia rohdei ATCC 43380]
 gi|238711664|gb|EEQ03879.1| Cell division protease ftsH [Yersinia rohdei ATCC 43380]
          Length = 607

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 122 EAKEEVSELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 177

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 178 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 221

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 222 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 267


>gi|238761762|ref|ZP_04622736.1| Cell division protease ftsH [Yersinia kristensenii ATCC 33638]
 gi|238699876|gb|EEP92619.1| Cell division protease ftsH [Yersinia kristensenii ATCC 33638]
          Length = 607

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 122 EAKEEVSELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 177

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 178 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 221

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 222 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 267


>gi|220908862|ref|YP_002484173.1| ATPase AAA [Cyanothece sp. PCC 7425]
 gi|219865473|gb|ACL45812.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7425]
          Length = 507

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 42/189 (22%)

Query: 26  LKLKEGITDIISSRRLDDGVR-------EELEDLLIRS----------DIGVAVAQK--- 65
            +L   +   +  + LDD VR       E +  +L R+          D+ + + +K   
Sbjct: 152 ERLVSTLGKPLQPKDLDDLVRSCQGLSMERIRRVLGRAIATHAELRPQDVDLVLEEKQQT 211

Query: 66  -----IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
                I++    K   +++S    L ++ + + +     S          P  +L+VG+ 
Sbjct: 212 IRQTQILDFYPAK---EEISDIGGLDNLKDWLLRRGGAFSDRARQYGLPHPRGLLLVGMQ 268

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA---------IDQLKIWADRTSADFVC 171
           G GK+     ++         + L   D  R  A           Q+   A+  +   + 
Sbjct: 269 GTGKSLTAKAIAHH-----WHLPLLRLDVGRLFAGLVGESESRTRQMIQLAEALAPCVLW 323

Query: 172 SEIGSDAAA 180
            +    A A
Sbjct: 324 IDEIDKAFA 332


>gi|154151847|ref|YP_001405465.1| hydrogenase accessory protein HypB [Candidatus Methanoregula boonei
           6A8]
 gi|154000399|gb|ABS56822.1| hydrogenase accessory protein HypB [Methanoregula boonei 6A8]
          Length = 215

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 67/195 (34%), Gaps = 17/195 (8%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV +++ +YDV+  I        K              ++G  G GKT +I +L   + +
Sbjct: 5   DVRMEKDVYDVNNSIADENARHLKEHGIRAFD------LLGAIGSGKTALIERLVPLLKE 58

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VCSEIGSDAAALAYEAFKQAQAKKVDV 196
            GL+    AGD +     D  +I A    A      +     A L   A        +DV
Sbjct: 59  RGLRAGAIAGDVY--GDDDFQRIVATGIPAYNANTGKECHLDAHLVEHAIDHLPLDTIDV 116

Query: 197 LIIDTAGRL--HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           L I+  G +    +  L A    +I      D       +   D T G      V     
Sbjct: 117 LFIENVGNMVCPTDFRLGAEKRIVIVSSTEGDDVVNKHPMMFRDCTIG------VINKVD 170

Query: 255 VAGTTGLIMTKMDGT 269
           +A   G  + +M+  
Sbjct: 171 LAPLVGANLGRMESD 185


>gi|126732994|ref|ZP_01748754.1| ATPase, ParA type [Sagittula stellata E-37]
 gi|126706566|gb|EBA05643.1| ATPase, ParA type [Sagittula stellata E-37]
          Length = 401

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 8/133 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF-RSAAIDQLKIWADRTSADFVC 171
           VI   G  G GKTT    L++K++  G + ++   D     +A+   +   D      + 
Sbjct: 126 VINFKG--GSGKTTTSAHLAQKLALDGYRTLVIDLDPQASLSALHGYQPEFDLLDGGTLY 183

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLI--IDTAGRLHNNSIL---MAGIGKMIRVLKRLD 226
             I  D      +  ++     +D++   +D     H         AG     RV  +L 
Sbjct: 184 DAIRYDDPVPLRDVIQRTYFPNLDIVPGNLDLMEFEHETPRALVSGAGDMFFTRVGNKLS 243

Query: 227 PHAPHSVLQVLDA 239
             A    + V D 
Sbjct: 244 EVADDYDIVVFDC 256


>gi|153215203|ref|ZP_01949884.1| adenylylsulfate kinase [Vibrio cholerae 1587]
 gi|153801113|ref|ZP_01955699.1| adenylylsulfate kinase [Vibrio cholerae MZO-3]
 gi|153825796|ref|ZP_01978463.1| adenylylsulfate kinase [Vibrio cholerae MZO-2]
 gi|229527512|ref|ZP_04416904.1| adenylylsulfate kinase [Vibrio cholerae 12129(1)]
 gi|254291471|ref|ZP_04962263.1| adenylylsulfate kinase [Vibrio cholerae AM-19226]
 gi|124114848|gb|EAY33668.1| adenylylsulfate kinase [Vibrio cholerae 1587]
 gi|124123346|gb|EAY42089.1| adenylylsulfate kinase [Vibrio cholerae MZO-3]
 gi|149740519|gb|EDM54634.1| adenylylsulfate kinase [Vibrio cholerae MZO-2]
 gi|150422661|gb|EDN14616.1| adenylylsulfate kinase [Vibrio cholerae AM-19226]
 gi|229335144|gb|EEO00629.1| adenylylsulfate kinase [Vibrio cholerae 12129(1)]
          Length = 215

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + L  ++ AK  +V    + V +     L             RP V+   G++G GK+TV
Sbjct: 6   DSLRFEQDAKPENVVWHRHAVDKAQRAALKQ----------QRPAVLWFTGLSGAGKSTV 55

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSA 153
            G L  +++  G    L  GD  R  
Sbjct: 56  AGALENRLAALGYHTYLLDGDNVRHG 81


>gi|156743873|ref|YP_001434002.1| ABC transporter-like protein [Roseiflexus castenholzii DSM 13941]
 gi|156235201|gb|ABU59984.1| ABC transporter related [Roseiflexus castenholzii DSM 13941]
          Length = 300

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           E + K           +   RP  I   +G NG GKTT IG L   +     +  +   D
Sbjct: 8   EELTKRFGDRVAVDRINLEIRPGEIFGFLGPNGAGKTTTIGMLLGLIRPTSGRAFVLGYD 67

Query: 149 TFRSAA 154
             R AA
Sbjct: 68  IQREAA 73


>gi|85014379|ref|XP_955685.1| replication factor C [Encephalitozoon cuniculi GB-M1]
 gi|74630071|sp|Q8SQM0|RFC4_ENCCU RecName: Full=Replication factor C subunit 4; Short=Replication
           factor C4
 gi|19171379|emb|CAD27104.1| REPLICATION FACTOR C (ACTIVATOR 1) 37kDa SUBUNIT [Encephalitozoon
           cuniculi GB-M1]
          Length = 309

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 9/115 (7%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK-LSKKMSDAGLKVML 144
            ++ +++             +    PH +L  G  G GKTT   K L++++      ++ 
Sbjct: 11  SEIQDIVGNEATMELVSLMIESRDMPH-LLFTGPPGTGKTT-CAKILARRLLGNKEGLLE 68

Query: 145 AAG------DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
                    DT R+      +          +  +        A +A ++     
Sbjct: 69  LNASDERGIDTVRTTIKSFAQRRVKDCEFKIIILDEADSMTTTAQQAMRRVMEIH 123


>gi|332798265|ref|YP_004459764.1| ATPase-like, ParA/MinD [Tepidanaerobacter sp. Re1]
 gi|332696000|gb|AEE90457.1| ATPase-like, ParA/MinD [Tepidanaerobacter sp. Re1]
          Length = 266

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 106 DFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             +    VI ++ G  GVGK+TV G L+  +   G  V +   D
Sbjct: 27  GLNRIKKVIAVMSGKGGVGKSTVTGLLAVSLKKQGYSVGIMDAD 70


>gi|312282163|dbj|BAJ33947.1| unnamed protein product [Thellungiella halophila]
          Length = 1255

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 83/254 (32%), Gaps = 48/254 (18%)

Query: 16  KLTKGFASTSLKL----KEGITDIISSRRLDDGVREELEDLLIRSD---IGVAVAQKIVE 68
           +  +    +  +        + +I+   +  +          I +D   +G         
Sbjct: 478 REKQSMHKSRQRFWELAGSNLGNILGVEKSAEQ---------IDADTAVVGDEGEVDFKG 528

Query: 69  ELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGK 124
           E       +  + VS   +   ++E   + L   S +           VI+VVG  G GK
Sbjct: 529 EAKFAQHMKKGEAVSDFAMSKTLAEQ-RQYLPIFSVRDELLQVVRENQVIVVVGETGSGK 587

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTSADF-------VCSEIG 175
           TT   +L++ + + G  +    G T   R AA+   K  ++    +        +  E  
Sbjct: 588 TT---QLTQYLHEDGYTINGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDV 644

Query: 176 SDAAALA---------YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           +    +           E  K +   K  V+++D A     N+        +  +LK++ 
Sbjct: 645 TGPNTVIKYMTDGVLLRETLKDSDLDKYRVVVMDEAHERSLNTD------VLFGILKKVV 698

Query: 227 PHAPHSVLQVLDAT 240
                  L V  AT
Sbjct: 699 ARRRDFKLIVTSAT 712


>gi|269961974|ref|ZP_06176329.1| cell division protein FtsH [Vibrio harveyi 1DA3]
 gi|269833297|gb|EEZ87401.1| cell division protein FtsH [Vibrio harveyi 1DA3]
          Length = 680

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 180 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 233

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 234 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 277

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 278 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 326


>gi|257898983|ref|ZP_05678636.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium Com15]
 gi|257836895|gb|EEV61969.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium Com15]
          Length = 744

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 19/145 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + + ++L      +D +V R    V++ I +  + L+K      S      L VG  GVG
Sbjct: 432 KNLADDLKAHVIGQDNAVDR----VAKAIRRNRVGLNKQNRPIGS-----FLFVGPTGVG 482

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KT +  +L+ ++   G +  +   D          +     + +  + S  G      A 
Sbjct: 483 KTELAKQLAYEL--FGSQDSMIRFDMS--------EYMEKHSVSKLIGSPPGYVGYEEAG 532

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNN 208
           +  ++ +     ++++D   + H +
Sbjct: 533 QLTEKVRRNPYSLVLLDEVEKAHPD 557


>gi|257885265|ref|ZP_05664918.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium 1,231,501]
 gi|257821117|gb|EEV48251.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium 1,231,501]
          Length = 744

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 19/145 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + + ++L      +D +V R    V++ I +  + L+K      S      L VG  GVG
Sbjct: 432 KNLADDLKAHVIGQDNAVDR----VAKAIRRNRVGLNKQNRPIGS-----FLFVGPTGVG 482

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KT +  +L+ ++   G +  +   D          +     + +  + S  G      A 
Sbjct: 483 KTELAKQLAYEL--FGSQDSMIRFDMS--------EYMEKHSVSKLIGSPPGYVGYEEAG 532

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNN 208
           +  ++ +     ++++D   + H +
Sbjct: 533 QLTEKVRRNPYSLVLLDEVEKAHPD 557


>gi|322421921|ref|YP_004201144.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Geobacter sp. M18]
 gi|320128308|gb|ADW15868.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Geobacter sp. M18]
          Length = 167

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 8/137 (5%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS----AAIDQLKIWADRTSA 167
            V+  V  +G GKTT++ K+   + + G ++ +   D  R        D  ++ A     
Sbjct: 4   KVVSFVAKSGTGKTTLLEKVIAHLKERGYRLGVIKHDAHRFDIDHPGKDSYRLTAAGADT 63

Query: 168 DFVCSEIG---SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
             + S          A A    +       DV ++ T G   N S+    I +  R    
Sbjct: 64  MLISSPEKLAIVKKHAAAPSLEELLATYFNDVDLVITEG-FKNGSMPKIEINRQERSTTL 122

Query: 225 LDPHAPHSVLQVLDATT 241
           L     H    V  A+ 
Sbjct: 123 LCRGEEHDPTLVAVASD 139


>gi|238757570|ref|ZP_04618755.1| Cell division protease ftsH [Yersinia aldovae ATCC 35236]
 gi|238704332|gb|EEP96864.1| Cell division protease ftsH [Yersinia aldovae ATCC 35236]
          Length = 646

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVDYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|227550555|ref|ZP_03980604.1| ATP-binding subunit of chaperone protein [Enterococcus faecium
           TX1330]
 gi|257888580|ref|ZP_05668233.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium 1,141,733]
 gi|257897042|ref|ZP_05676695.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium Com12]
 gi|293378735|ref|ZP_06624893.1| putative negative regulator of genetic competence ClpC/MecB
           [Enterococcus faecium PC4.1]
 gi|227180263|gb|EEI61235.1| ATP-binding subunit of chaperone protein [Enterococcus faecium
           TX1330]
 gi|257824634|gb|EEV51566.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium 1,141,733]
 gi|257833607|gb|EEV60028.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium Com12]
 gi|292642663|gb|EFF60815.1| putative negative regulator of genetic competence ClpC/MecB
           [Enterococcus faecium PC4.1]
          Length = 744

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 19/145 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + + ++L      +D +V R    V++ I +  + L+K      S      L VG  GVG
Sbjct: 432 KNLADDLKAHVIGQDNAVDR----VAKAIRRNRVGLNKQNRPIGS-----FLFVGPTGVG 482

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KT +  +L+ ++   G +  +   D          +     + +  + S  G      A 
Sbjct: 483 KTELAKQLAYEL--FGSQDSMIRFDMS--------EYMEKHSVSKLIGSPPGYVGYEEAG 532

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNN 208
           +  ++ +     ++++D   + H +
Sbjct: 533 QLTEKVRRNPYSLVLLDEVEKAHPD 557


>gi|254508974|ref|ZP_05121080.1| adenylylsulfate kinase [Vibrio parahaemolyticus 16]
 gi|219548078|gb|EED25097.1| adenylylsulfate kinase [Vibrio parahaemolyticus 16]
          Length = 205

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 98  PLSKPFNWDFSH-RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            + K F  +    +P V+   G++G GK+TV G L  K+++ G    L  GD  R  
Sbjct: 18  AIDKQFRANLKQQKPAVLWFTGLSGAGKSTVAGALENKLAELGYHTYLLDGDNVRHG 74


>gi|153831438|ref|ZP_01984105.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 623-39]
 gi|148873080|gb|EDL71215.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           cholerae 623-39]
          Length = 391

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   +KI E L      ++ + + +   V     ++    +
Sbjct: 11  NDIIREEIKDVLPKKESAALPTPRKIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDT 70

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 71  TSEGVELGKSN--ILLIGPTGSGKTLLAETLARLL 103


>gi|91783718|ref|YP_558924.1| putative ClpA/B-type chaperone, ATPase subunit ClpB, heat shock
           protein [Burkholderia xenovorans LB400]
 gi|91687672|gb|ABE30872.1| Putative ClpA/B-type chaperone, ATPase subunit ClpB, heat shock
           protein [Burkholderia xenovorans LB400]
          Length = 916

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 67/192 (34%), Gaps = 41/192 (21%)

Query: 44  GVREELEDLL--IRSD---IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM--- 95
              ++LE  L  ++ D   +   V++ IV E+++      + V R++ D    +  +   
Sbjct: 531 DSLKDLERALTQLQGDAPLVFPEVSEAIVAEVVSDWTG--IPVGRMVTDEVAAVQSLPAT 588

Query: 96  -----------------LMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSD 137
                             +  ++    D      V L+ G +GVGKT T +  L++ +  
Sbjct: 589 LEARVIGQPDALRQIGERVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALA-LAEALYG 647

Query: 138 AGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
               ++      ++ A  +  LK            +  G           +  + +   V
Sbjct: 648 GEQNLITVNMSEYQEAHTVSGLK-----------GAPPGYVGYGEGGVLTEAVRRRPYSV 696

Query: 197 LIIDTAGRLHNN 208
           +++D   + H +
Sbjct: 697 VLLDEIEKAHRD 708


>gi|69245716|ref|ZP_00603582.1| UvrB/UvrC protein:AAA ATPase, central region [Enterococcus faecium
           DO]
 gi|257880219|ref|ZP_05659872.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium 1,230,933]
 gi|257883020|ref|ZP_05662673.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium 1,231,502]
 gi|257891397|ref|ZP_05671050.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium 1,231,410]
 gi|257893606|ref|ZP_05673259.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium 1,231,408]
 gi|258614407|ref|ZP_05712177.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Enterococcus
           faecium DO]
 gi|260560483|ref|ZP_05832657.1| uvrB/uvrC protein/AAA ATPase [Enterococcus faecium C68]
 gi|261209000|ref|ZP_05923405.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium TC 6]
 gi|293570988|ref|ZP_06682031.1| ClpE [Enterococcus faecium E980]
 gi|314939240|ref|ZP_07846494.1| ATPase family [Enterococcus faecium TX0133a04]
 gi|314942058|ref|ZP_07848916.1| ATPase family [Enterococcus faecium TX0133C]
 gi|314949986|ref|ZP_07853280.1| ATPase family [Enterococcus faecium TX0082]
 gi|314951224|ref|ZP_07854279.1| ATPase family [Enterococcus faecium TX0133A]
 gi|314991647|ref|ZP_07857117.1| ATPase family [Enterococcus faecium TX0133B]
 gi|314996773|ref|ZP_07861786.1| ATPase family [Enterococcus faecium TX0133a01]
 gi|68195609|gb|EAN10049.1| UvrB/UvrC protein:AAA ATPase, central region [Enterococcus faecium
           DO]
 gi|257814447|gb|EEV43205.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium 1,230,933]
 gi|257818678|gb|EEV46006.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium 1,231,502]
 gi|257827757|gb|EEV54383.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium 1,231,410]
 gi|257829985|gb|EEV56592.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium 1,231,408]
 gi|260073485|gb|EEW61813.1| uvrB/uvrC protein/AAA ATPase [Enterococcus faecium C68]
 gi|260077039|gb|EEW64761.1| UvrB/UvrC protein/AAA ATPase [Enterococcus faecium TC 6]
 gi|291608914|gb|EFF38193.1| ClpE [Enterococcus faecium E980]
 gi|313589068|gb|EFR67913.1| ATPase family [Enterococcus faecium TX0133a01]
 gi|313593738|gb|EFR72583.1| ATPase family [Enterococcus faecium TX0133B]
 gi|313596576|gb|EFR75421.1| ATPase family [Enterococcus faecium TX0133A]
 gi|313599184|gb|EFR78029.1| ATPase family [Enterococcus faecium TX0133C]
 gi|313641491|gb|EFS06071.1| ATPase family [Enterococcus faecium TX0133a04]
 gi|313643678|gb|EFS08258.1| ATPase family [Enterococcus faecium TX0082]
          Length = 744

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 19/145 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + + ++L      +D +V R    V++ I +  + L+K      S      L VG  GVG
Sbjct: 432 KNLADDLKAHVIGQDNAVDR----VAKAIRRNRVGLNKQNRPIGS-----FLFVGPTGVG 482

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KT +  +L+ ++   G +  +   D          +     + +  + S  G      A 
Sbjct: 483 KTELAKQLAYEL--FGSQDSMIRFDMS--------EYMEKHSVSKLIGSPPGYVGYEEAG 532

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNN 208
           +  ++ +     ++++D   + H +
Sbjct: 533 QLTEKVRRNPYSLVLLDEVEKAHPD 557


>gi|51594826|ref|YP_069017.1| ATP-dependent metalloprotease [Yersinia pseudotuberculosis IP
           32953]
 gi|108806050|ref|YP_649966.1| ATP-dependent metalloprotease [Yersinia pestis Antiqua]
 gi|108813406|ref|YP_649173.1| ATP-dependent metalloprotease [Yersinia pestis Nepal516]
 gi|145600798|ref|YP_001164874.1| ATP-dependent metalloprotease [Yersinia pestis Pestoides F]
 gi|153946925|ref|YP_001402556.1| ATP-dependent metalloprotease [Yersinia pseudotuberculosis IP
           31758]
 gi|153997279|ref|ZP_02022379.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis CA88-4125]
 gi|186893835|ref|YP_001870947.1| ATP-dependent metalloprotease [Yersinia pseudotuberculosis PB1/+]
 gi|218930516|ref|YP_002348391.1| ATP-dependent metalloprotease [Yersinia pestis CO92]
 gi|229839154|ref|ZP_04459313.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896643|ref|ZP_04511810.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis Pestoides A]
 gi|229899718|ref|ZP_04514859.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229903880|ref|ZP_04518993.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis Nepal516]
 gi|51588108|emb|CAH19714.1| cell division protein [Yersinia pseudotuberculosis IP 32953]
 gi|108777054|gb|ABG19573.1| membrane protease FtsH catalytic subunit [Yersinia pestis Nepal516]
 gi|108777963|gb|ABG12021.1| membrane protease FtsH catalytic subunit [Yersinia pestis Antiqua]
 gi|115349127|emb|CAL22090.1| cell division protein [Yersinia pestis CO92]
 gi|145212494|gb|ABP41901.1| membrane protease FtsH catalytic subunit [Yersinia pestis Pestoides
           F]
 gi|149288916|gb|EDM38996.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis CA88-4125]
 gi|152958420|gb|ABS45881.1| ATP-dependent metallopeptidase HflB [Yersinia pseudotuberculosis IP
           31758]
 gi|186696861|gb|ACC87490.1| ATP-dependent metalloprotease FtsH [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679650|gb|EEO75753.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis Nepal516]
 gi|229687210|gb|EEO79285.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695520|gb|EEO85567.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700421|gb|EEO88453.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis Pestoides A]
 gi|320013705|gb|ADV97276.1| subunit of integral membrane ATP-dependent zinc metallopeptidase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 644

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVSELVDYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304


>gi|326794263|ref|YP_004312083.1| ATP-dependent metalloprotease FtsH [Marinomonas mediterranea MMB-1]
 gi|326545027|gb|ADZ90247.1| ATP-dependent metalloprotease FtsH [Marinomonas mediterranea MMB-1]
          Length = 654

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      + +E +   L   SK F       P  IL+ G  G GKT     L+K ++ 
Sbjct: 158 DVAGCDEAKEDTEELVDFLREPSK-FQRLGGKIPRGILMAGPPGTGKT----LLAKAIAG 212

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 213 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKHAPCIIF-ID 256

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR   + +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 257 EIDAVGRNRGSGMGGGNDEREQTLNQLLVEMDGFEGNEGIIVIAATNRPDVLD 309


>gi|312622255|ref|YP_004023868.1| ABC transporter-like protein [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202722|gb|ADQ46049.1| ABC transporter related protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 597

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM----PLSKPFNWDFS---HR 110
           + +A  ++I E L T+    D      L  +   I    +       KP   D S     
Sbjct: 322 VAMASTERIFEILDTQPDIHDAKDAYDLPPIRGEITFENVSFSYDEEKPVLKDVSFTIKA 381

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
              I +VG  G GKTT+I  +++       ++++   D
Sbjct: 382 GETIALVGETGAGKTTIINLIARFYDPQKGRILIDGHD 419


>gi|312963089|ref|ZP_07777574.1| cell division protease FtsH [Pseudomonas fluorescens WH6]
 gi|311282600|gb|EFQ61196.1| cell division protease FtsH [Pseudomonas fluorescens WH6]
          Length = 636

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 201 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|308094710|ref|ZP_05891424.2| cell division protease FtsH [Vibrio parahaemolyticus AN-5034]
 gi|308089598|gb|EFO39293.1| cell division protease FtsH [Vibrio parahaemolyticus AN-5034]
          Length = 680

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 180 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 233

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 234 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 277

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 278 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 326


>gi|307172984|gb|EFN64126.1| Fidgetin-like protein 1 [Camponotus floridanus]
          Length = 636

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKP-FN 104
           EE+ED  +R +I   + + I  E++             L  + +++ ++++ P+ +P   
Sbjct: 319 EEVEDERLR-NIDPDMIELIRSEIMESGKTITWDDIAGLEYIKKIVKEVVVFPMLRPDIF 377

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGK 130
                 P  IL  G  G GKT  IGK
Sbjct: 378 TGLRRPPKGILFFGPPGTGKTL-IGK 402


>gi|302341686|ref|YP_003806215.1| Cobyrinic acid ac-diamide synthase [Desulfarculus baarsii DSM 2075]
 gi|301638299|gb|ADK83621.1| Cobyrinic acid ac-diamide synthase [Desulfarculus baarsii DSM 2075]
          Length = 253

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + I V G  GVGKTTV G L + + + GLK +LA 
Sbjct: 3   YTIAVAGKGGVGKTTVSGLLVRYLVEQGLKPVLAV 37


>gi|269968319|ref|ZP_06182341.1| cell division protein FtsH [Vibrio alginolyticus 40B]
 gi|269827070|gb|EEZ81382.1| cell division protein FtsH [Vibrio alginolyticus 40B]
          Length = 678

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 180 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 233

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 234 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 277

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 278 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 326


>gi|262170504|ref|ZP_06038182.1| adenylylsulfate kinase [Vibrio mimicus MB-451]
 gi|261891580|gb|EEY37566.1| adenylylsulfate kinase [Vibrio mimicus MB-451]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             RP V+   G++G GK+TV G L  ++++ G    L  GD  R  
Sbjct: 29  EQRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVRHG 74


>gi|110798894|ref|YP_695281.1| ABC transporter, ATP-binding protein [Clostridium perfringens ATCC
           13124]
 gi|168209208|ref|ZP_02634833.1| ABC transporter, ATP-binding protein [Clostridium perfringens B
           str. ATCC 3626]
 gi|110673541|gb|ABG82528.1| ABC transporter, ATP-binding protein [Clostridium perfringens ATCC
           13124]
 gi|170712586|gb|EDT24768.1| ABC transporter, ATP-binding protein [Clostridium perfringens B
           str. ATCC 3626]
          Length = 596

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSD 137
           VVG+NG GKTT I  L++    
Sbjct: 381 VVGLNGAGKTTFIKLLARLYEP 402


>gi|90580529|ref|ZP_01236334.1| putative cell division protein FtsH [Vibrio angustum S14]
 gi|90438187|gb|EAS63373.1| putative cell division protein FtsH [Photobacterium angustum S14]
          Length = 651

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 160 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 213

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 214 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 257

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 258 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 306


>gi|83648150|ref|YP_436585.1| chaperone activity ATPase ATP-binding subunit [Hahella chejuensis
           KCTC 2396]
 gi|83636193|gb|ABC32160.1| ATPase with chaperone activity, ATP-binding subunit [Hahella
           chejuensis KCTC 2396]
          Length = 1093

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 54/161 (33%), Gaps = 18/161 (11%)

Query: 38  SRRLDD-GVREEL------EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
            RR D+  V E           LI  D    + +  V     +R       Q VL D   
Sbjct: 452 GRRADEQAVYEAFQTNFHFRKTLI--DKNATLQENEVRRFFEQRLVGQPQAQDVLTDTVM 509

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGDT 149
            I   L PL KP N         +L +G  GVGKT     L++++ +    ++     + 
Sbjct: 510 TIKAQLTPLGKPLNT--------LLFIGPTGVGKTEAAKLLTQRLFNNSDCLVRIDLNEF 561

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
             + A+ +L                   A  L  +  ++A 
Sbjct: 562 VDAGAVHRLIGDGMGQGGLLTERVRYQKACVLLLDEIEKAH 602


>gi|78222786|ref|YP_384533.1| ArgK protein [Geobacter metallireducens GS-15]
 gi|78194041|gb|ABB31808.1| ArgK protein [Geobacter metallireducens GS-15]
          Length = 320

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 69/218 (31%), Gaps = 36/218 (16%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           +++AQ+I++  L         +       +E +  +     + F    +  P        
Sbjct: 1   MSLAQRILDSDLRAAARLMRDLDDGFRSAAEEMKSLYPHTGRAFILGITGPP-------- 52

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCS 172
            G GK+T++ +L+      G +V + A D    F   AI      +   A+         
Sbjct: 53  -GAGKSTLVDQLTAAYRQRGRRVGVVAIDPTSPFTGGAILGDRIRMNRHAEDPGVFIRSL 111

Query: 173 EIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
                   L+    +      A  +DV+II+T G   +                 +D   
Sbjct: 112 ATRGHMGGLSRSTGDVVNVMDAMGMDVVIIETVGVGQDE----------------IDIVR 155

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
                 V+      + ++ ++      G    ++ K D
Sbjct: 156 MAHTTVVVSVPGLGDDIQAIKAGVLEIG-DLFVVNKAD 192


>gi|22124596|ref|NP_668019.1| ATP-dependent metalloprotease [Yersinia pestis KIM 10]
 gi|45440435|ref|NP_991974.1| ATP-dependent metalloprotease [Yersinia pestis biovar Microtus str.
           91001]
 gi|165928181|ref|ZP_02224013.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937451|ref|ZP_02226014.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011345|ref|ZP_02232243.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166214009|ref|ZP_02240044.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401354|ref|ZP_02306854.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420745|ref|ZP_02312498.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423286|ref|ZP_02315039.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170025951|ref|YP_001722456.1| ATP-dependent metalloprotease [Yersinia pseudotuberculosis YPIII]
 gi|270489130|ref|ZP_06206204.1| ATP-dependent metalloprotease [Yersinia pestis KIM D27]
 gi|21957399|gb|AAM84270.1|AE013670_7 integral membrane peptidase, cell division protein [Yersinia pestis
           KIM 10]
 gi|45435292|gb|AAS60851.1| cell division protein [Yersinia pestis biovar Microtus str. 91001]
 gi|165914556|gb|EDR33170.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919868|gb|EDR37169.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989729|gb|EDR42030.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166204804|gb|EDR49284.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961551|gb|EDR57572.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049379|gb|EDR60787.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057456|gb|EDR67202.1| ATP-dependent metallopeptidase HflB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752485|gb|ACA70003.1| ATP-dependent metalloprotease FtsH [Yersinia pseudotuberculosis
           YPIII]
 gi|270337634|gb|EFA48411.1| ATP-dependent metalloprotease [Yersinia pestis KIM D27]
          Length = 647

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVSELVDYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|330469743|ref|YP_004407486.1| multidrug ABC transporter ATPase/permease [Verrucosispora maris
           AB-18-032]
 gi|328812714|gb|AEB46886.1| multidrug ABC transporter ATPase/permease [Verrucosispora maris
           AB-18-032]
          Length = 616

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF--VCSE 173
           +VGVNG GKTT++  L++        +++   D  R+  +DQ   W  R    F      
Sbjct: 393 LVGVNGAGKTTIVKLLARLYEPDSGAILVDGVDI-RTYTVDQ---WRARLGIIFQDFARF 448

Query: 174 IGSDAAALAYEAFKQAQAKK 193
             S A  +A+ A      + 
Sbjct: 449 EASAADNIAFGAVAAQSDRD 468


>gi|332160073|ref|YP_004296650.1| ATP-dependent metalloprotease [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607367|emb|CBY28865.1| cell division protein FtsH [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664303|gb|ADZ40947.1| ATP-dependent metalloprotease [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862036|emb|CBX72202.1| cell division protease ftsH [Yersinia enterocolitica W22703]
          Length = 607

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 122 EAKEEVSELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 177

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 178 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 221

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 222 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 267


>gi|311696098|gb|ADP98971.1| ABC transporter, ATP-binding protein [marine bacterium HP15]
          Length = 220

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 61/183 (33%), Gaps = 26/183 (14%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR--SAAIDQLKIWADRTSADFVCSEIG 175
           G +G GK+T++  L+  +  A   V +   D  R  + A DQ +  AD     F    + 
Sbjct: 34  GPSGSGKSTLLSLLAGMLRPASGTVRVLGTDIHRLGAGARDQFR--ADHMGVIFQQFNLV 91

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
              +  A        ++           R      +     +++  L     H    V++
Sbjct: 92  PYLSTRANVTLPCGLSELR---------RERTEPTVEDEAERLLAALSIPADHWQRKVIR 142

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIM-----TKMDGTAR---GGGLIPIVVTHKIPVY 287
           +      +     +    A+ G  GLI+     + +D   R      L+ +   H   V 
Sbjct: 143 LSIGQQQR-----IAAARALIGAPGLILADEPTSALDADNRDRFLELLLTLAHRHNTSVL 197

Query: 288 FLG 290
           F+ 
Sbjct: 198 FVS 200


>gi|297850938|ref|XP_002893350.1| hypothetical protein ARALYDRAFT_313276 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339192|gb|EFH69609.1| hypothetical protein ARALYDRAFT_313276 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1541

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 7/180 (3%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKM---LMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           EL+ KR   ++S       V E I  +   +  L K F+ + S    V+ + G+ G+GKT
Sbjct: 328 ELVVKRVLDELS--NTPEKVGEYIVGLESPMKDLMKLFDIESSSGVKVLGLYGMGGIGKT 385

Query: 126 TVIGKLSKKMSDAGLKVMLAAGD-TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T + K          K      D   RS+A + L         +        +  +   E
Sbjct: 386 T-LSKAFYNKVVGNFKQRAFISDIRERSSAENGLVTLQKTLIKELFRLVPEIEDVSRGLE 444

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             K+   +K  ++++D    +   + L+       +    +       +L  L       
Sbjct: 445 KIKENVHEKKIIVVLDDVDHIDQVNALVGETRWYGQGTLIVITTRDSEILSKLSVNQQYE 504


>gi|298204552|emb|CBI23827.3| unnamed protein product [Vitis vinifera]
          Length = 863

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 24/130 (18%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           S + +RKL     +    L +      +   + D   ++L+D +  +       + +++E
Sbjct: 37  SATLLRKLKIKLVAVQAVLDDAEAKQFTKSAVKD-WMDDLKDAVYDA-------EDLLDE 88

Query: 70  LLTKRYAKDVSVQRVLYDVS-----------ELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
           + T+     +                     + I + L+  +   N     +  VI +VG
Sbjct: 89  ITTEALRCKMESDAQTSATQSGEVYGREGNIQEIVEYLLSHNASGN-----KISVIALVG 143

Query: 119 VNGVGKTTVI 128
           + G+GKTT+ 
Sbjct: 144 MGGIGKTTLT 153


>gi|269956152|ref|YP_003325941.1| daunorubicin resistance ABC transporter ATPase subunit [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304833|gb|ACZ30383.1| daunorubicin resistance ABC transporter ATPase subunit [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 331

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           V+G NG GKTT I  L+  +   G    +   D  R
Sbjct: 36  VLGPNGAGKTTTIRMLATLLRPDGGSARVFGHDVVR 71


>gi|167035166|ref|YP_001670397.1| cobyrinic acid ac-diamide synthase [Pseudomonas putida GB-1]
 gi|166861654|gb|ABZ00062.1| Cobyrinic acid ac-diamide synthase [Pseudomonas putida GB-1]
          Length = 215

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 114 ILVVGV--NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I+++G    G GKTT+   L+   +  GL ++L  GD  +++A    +   +       C
Sbjct: 2   IILIGGEKGGSGKTTLACNLAVWGAQNGLDLLLIDGDP-QASASRFFERRDESFEGSVTC 60

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                D  A       QA + + D +IIDT GR    
Sbjct: 61  VRKVGDLYATV-----QAMSGRFDAVIIDTGGRDSIE 92


>gi|162419672|ref|YP_001608280.1| ATP-dependent metalloprotease [Yersinia pestis Angola]
 gi|162352487|gb|ABX86435.1| ATP-dependent metallopeptidase HflB [Yersinia pestis Angola]
          Length = 647

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 162 EAKEEVSELVDYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 217

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 218 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 261

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 307


>gi|311063633|ref|YP_003970358.1| ABC transporter permease/ATP-binding protein system
           [Bifidobacterium bifidum PRL2010]
 gi|310865952|gb|ADP35321.1| ATP-binding and permease protein of ABC transporter system
           [Bifidobacterium bifidum PRL2010]
          Length = 653

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 17/179 (9%)

Query: 100 SKPFNWDFSHRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSA 153
            KP   DFS        + +VG  G GKTT++  L +    +G  + +   DT    R  
Sbjct: 426 GKPIIHDFSASVSAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGIDTTSVPRWN 485

Query: 154 AIDQLKIWADRTSA---DFVCSEIGSDAAALAYEAFKQAQAKKVDVLI------IDTAGR 204
             DQ  +    T         +   S       +     +A  +D  +       DT   
Sbjct: 486 VHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDEQIVSACKAVGLDHFVRSLPQGYDTV-- 543

Query: 205 LHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           L +N+ L  G  +++ + + +   AP  +L    ++        ++             
Sbjct: 544 LDDNTSLSQGQRQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSF 602


>gi|301301067|ref|ZP_07207227.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300214235|gb|ADJ78651.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           salivarius CECT 5713]
 gi|300851337|gb|EFK79061.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 730

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 34/168 (20%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-------------------P 102
           V +K +E ++ ++   ++ V  +     E +  +   L K                    
Sbjct: 397 VTEKDMERIIEEKT--NIPVGELKAKEKEQLRDLGSSLEKHVIGQDEAVDKVARSIRRNR 454

Query: 103 FNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
             ++ S RP    L VG  GVGKT    +L++++   G +  +   D         +  +
Sbjct: 455 IGFNKSGRPIGSFLFVGPTGVGKTETAKQLAREL--FGTEDSMIRFD---------MSEY 503

Query: 162 ADRTSA-DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            ++ S    + S  G      A +  +Q +     ++++D   + H +
Sbjct: 504 MEKFSVSKLIGSPPGYVGYEEAGQLTEQVRRHPYSLILLDEVEKAHPD 551


>gi|269960885|ref|ZP_06175255.1| adenylylsulfate kinase [Vibrio harveyi 1DA3]
 gi|269834325|gb|EEZ88414.1| adenylylsulfate kinase [Vibrio harveyi 1DA3]
          Length = 205

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             +P V+   G++G GK+TV G L  ++++ G    L  GD  R  
Sbjct: 29  KQKPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVRHG 74


>gi|290961274|ref|YP_003492456.1| ABC transporter [Streptomyces scabiei 87.22]
 gi|260650800|emb|CBG73917.1| putative ABC transporter protein [Streptomyces scabiei 87.22]
          Length = 666

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 28/225 (12%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---------TFRSAAIDQ-LKIW 161
            ++ +VG NG GKTT++  L+   +    ++M    D           R A + Q  K W
Sbjct: 419 KIVALVGENGSGKTTLVKLLAGLYAPDRGRIMWDGVDAARVDRRRLAERIAMVAQDFKRW 478

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI-----IDT-AGRLHNNSILMAGI 215
                 +       S        A   A+A   DV+      +DT  GR  +    ++G 
Sbjct: 479 PFTARVNL-AIGRPSAPLTEERLAASVAEAGAQDVVEDLPRGLDTLLGRGFSGGHELSG- 536

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV-----AGTTGLIMTKMDGTA 270
           G+  R+      +    VL V + T   +A  ++E+F  +      G T +++T    + 
Sbjct: 537 GQWQRLGIARAAYRRGRVLIVDEPTAALDARAELEVFEKIRALAGTGQTVVLITHRLASV 596

Query: 271 RGGGLIPIVV-----THKIPVYFLGVGEGINDLEPFVAKDFSAVI 310
           R   L+ ++          P   L  G    +L    A+ F+A +
Sbjct: 597 RHADLVHVLDQGRLVESGTPDELLATGGVYAELYSLQAEQFAAKV 641


>gi|259503913|ref|ZP_05746815.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
           antri DSM 16041]
 gi|259168124|gb|EEW52619.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
           antri DSM 16041]
          Length = 721

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 29/221 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQR--VLYDVSELIHKMLMPLSKP------------FNWDFSH 109
           QKIVEE  T     D+  Q    L D+ + +   ++  ++                + S 
Sbjct: 388 QKIVEE-KTNIPVGDLQQQEENQLRDLDKELEAHVIGQNQAVDKVARAIRRNRIGLNKSG 446

Query: 110 RPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           RP    L VG  GVGKT    +L+K++   G K  +   D          +     +++ 
Sbjct: 447 RPIGSFLFVGPTGVGKTETAKQLAKQL--FGSKDAMIRFDMS--------EYMDKTSTSK 496

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRL 225
            + +  G      A +  +Q +     ++++D   + H + +   L       +   +  
Sbjct: 497 LIGAAPGYVGYEEAGQLTEQVRRHPYSLILLDEVEKAHPDVMHMFLQILDDGRLTDSQGR 556

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
                 +++ +       +A+  V      +G+T  I+ K+
Sbjct: 557 TVSFKDTIIIMTSNAGTGDAVASVGFGAEASGSTHSIIDKL 597


>gi|302527876|ref|ZP_07280218.1| translation elongation factor G [Streptomyces sp. AA4]
 gi|302436771|gb|EFL08587.1| translation elongation factor G [Streptomyces sp. AA4]
          Length = 703

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 34/167 (20%)

Query: 106 DFSHRPHVILVVGVNGVGKTT-VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
           D   +   +++VG +G GKTT     L+            A+G   R+ ++ +     D 
Sbjct: 18  DDPAKVRNVVLVGPSGSGKTTLTEALLA------------ASGTVPRAGSVVEGTTVCDH 65

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
             A          + A    A          + +IDT G       L AG+         
Sbjct: 66  DPAAVRQQRSVGLSVAPVLHA-------GHKINLIDTPGYADFVGELRAGLR-------- 110

Query: 225 LDPHAPHSVLQVLDATTGQNALRQV--EMFHAVAGTTGLIMTKMDGT 269
               A  + L V+ A  G +A      E   +V     ++++++D  
Sbjct: 111 ----AADAALFVVCAAEGVDAATVAVWEECASVGMPRAVVVSRLDHH 153


>gi|261345167|ref|ZP_05972811.1| ATP-dependent metallopeptidase HflB [Providencia rustigianii DSM
           4541]
 gi|282566859|gb|EFB72394.1| ATP-dependent metallopeptidase HflB [Providencia rustigianii DSM
           4541]
          Length = 655

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVGEIVEFLREPARFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRADVLD 304


>gi|222100445|ref|YP_002535013.1| Adenylosuccinate synthetase [Thermotoga neapolitana DSM 4359]
 gi|221572835|gb|ACM23647.1| Adenylosuccinate synthetase [Thermotoga neapolitana DSM 4359]
          Length = 397

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 278 IVVTHKIPVYFLGVGEGINDL 298
           I      P+ ++  GE I D+
Sbjct: 374 IEKETGKPIKYISTGEKIEDI 394


>gi|221507322|gb|EEE32926.1| 26S protease regulatory subunit, putative [Toxoplasma gondii VEG]
          Length = 210

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 78  DVSVQRVLYDVSELIH-KMLMPLSKP-FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           ++S    L+ V +L+  K++ P+ +P  +      P  IL+ G  G GKTT    L+K M
Sbjct: 21  NISEIAGLHRVKKLLTDKIINPILRPELHVGLHQAPRGILLFGPPGTGKTT----LAKWM 76


>gi|160937732|ref|ZP_02085092.1| hypothetical protein CLOBOL_02625 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439377|gb|EDP17129.1| hypothetical protein CLOBOL_02625 [Clostridium bolteae ATCC
           BAA-613]
          Length = 535

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 64  QKIVEELLTK-----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             ++E    K      + +  +  + +++  +LI     PLS+P N     R   I++VG
Sbjct: 316 MDVIELAREKPKPEFHFLEARTPGKYIFETKDLIIGYDEPLSRPLNL-VMERGQKIVLVG 374

Query: 119 VNGVGKTT 126
            NG+GKTT
Sbjct: 375 ANGIGKTT 382


>gi|145479919|ref|XP_001425982.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393054|emb|CAK58584.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1384

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 25/152 (16%)

Query: 19   KGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE-ELLT----- 72
            +G+   S  L +   D+      +  + EE +D  +++ I + +   IV+  L       
Sbjct: 1087 RGYNKRSNNLNQ-FKDLAVKAHKNHKITEE-KDRNLQTLINIKIVSIIVDFNLKEDIPRV 1144

Query: 73   -----------KRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSH-RPHVILVVGV 119
                       K+  KD+   +     V+ +I + L  L  P N   S  +P V  V+G 
Sbjct: 1145 TNMIMKSLQKCKKAKKDLDQDKETNQIVAMVIEEDLNQLINPRNTIGSIIKPKVFFVLGG 1204

Query: 120  NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
             G GK T   K+ ++       V L+AGD  R
Sbjct: 1205 PGAGKGTQSAKMVERY----HFVHLSAGDLLR 1232


>gi|33152553|ref|NP_873906.1| cell division protein, FtsH [Haemophilus ducreyi 35000HP]
 gi|33148777|gb|AAP96295.1| cell division protein, FtsH [Haemophilus ducreyi 35000HP]
          Length = 639

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 57/186 (30%), Gaps = 27/186 (14%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E++ T+    DV+      +    +   L   SK F       P  IL+VG  G GKT  
Sbjct: 146 EQVKTR--FSDVAGCDEAKEEVSEVVDFLTEPSK-FQKLGGRIPKGILMVGPPGTGKT-- 200

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L+K ++            +                  +       S    L  +A K
Sbjct: 201 --LLAKAIAGEAGVPFFTMAGS---------------DFVEMFVGVGASRVRDLFDQAKK 243

Query: 188 QAQAKKVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            A      +  ID  GR    + L          + ++L  +D       + ++ AT   
Sbjct: 244 NAPCIIF-IDEIDAVGRKRGGAGLSGGHDEREQTLNQMLVEMDGFEGSEGVIIIAATNRA 302

Query: 244 NALRQV 249
           + L   
Sbjct: 303 DVLDDA 308


>gi|326519040|dbj|BAJ92680.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 224

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 14/173 (8%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-DFVCSE 173
           ++ G NG GKTT +  L+     +  +++    D        Q K+  +  S  D V  +
Sbjct: 40  VLTGANGSGKTTFLRMLAGFSRPSAGEILWNGHDVTSPGVFQQYKLQLNWMSLKDAVKEK 99

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +        +E  +    +    + +   GRL N+   M  +G+  R+           +
Sbjct: 100 LTVLENVQWFELLEGKHGRSAPAIELMGLGRLMNDKARMLSMGQRKRLQLARLLAIDRPI 159

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
             + + +   ++                I+   +   +GG +I   V   +P+
Sbjct: 160 WLLDEPSVALDS--------EGVKLLEYIIA--EHRKKGGIVI---VATHLPI 199


>gi|312884010|ref|ZP_07743727.1| hypothetical protein VIBC2010_01968 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368468|gb|EFP96003.1| hypothetical protein VIBC2010_01968 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 642

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 51/169 (30%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV+EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 159 DEAKEDVAELVEYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 212

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 213 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 256

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 257 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 305


>gi|307249212|ref|ZP_07531209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858736|gb|EFM90795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 500

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGV-GKTTVIGKLSKKMSDAGLKVMLAAG--- 147
           + ++L  ++  F  + S +     +VGV G  GKTT    L++  +  G K  +      
Sbjct: 97  LARILSEIAGAFYANPSEKLT---LVGVTGTNGKTTSAQLLAQWHNLLGGKSAVMGTIGN 153

Query: 148 ----DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDT 201
                   +A      I   R  ADFV       A  ++     Q  A+A   D+ +   
Sbjct: 154 GLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEALSYDLAVFTN 213

Query: 202 AGRLHNNSILMAGI 215
             R H +       
Sbjct: 214 LSRDHLDYHKTMEE 227


>gi|303250492|ref|ZP_07336689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251534|ref|ZP_07533441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302650480|gb|EFL80639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860998|gb|EFM93004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 500

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGV-GKTTVIGKLSKKMSDAGLKVMLAAG--- 147
           + ++L  ++  F  + S +     +VGV G  GKTT    L++  +  G K  +      
Sbjct: 97  LARILSEIAGAFYANPSEKLT---LVGVTGTNGKTTSAQLLAQWHNLLGGKSAVMGTIGN 153

Query: 148 ----DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDT 201
                   +A      I   R  ADFV       A  ++     Q  A+A   D+ +   
Sbjct: 154 GLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEALSYDLAVFTN 213

Query: 202 AGRLHNNSILMAGI 215
             R H +       
Sbjct: 214 LSRDHLDYHKTMEE 227


>gi|303240087|ref|ZP_07326608.1| ABC transporter related protein [Acetivibrio cellulolyticus CD2]
 gi|302592356|gb|EFL62083.1| ABC transporter related protein [Acetivibrio cellulolyticus CD2]
          Length = 518

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 64  QKIVEELLTK-----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             I+E+   K     ++ +  +  + ++    LI     PL+KP          V  + G
Sbjct: 299 MDIIEKAREKIKPSFKFREARTPGKYVFTAENLIIGYEEPLTKPLTLSLERGKKV-AIKG 357

Query: 119 VNGVGKTT 126
           VNG+GK+T
Sbjct: 358 VNGLGKST 365


>gi|298375676|ref|ZP_06985633.1| negative regulator of genetic competence ClpC/MecB [Bacteroides sp.
           3_1_19]
 gi|298268176|gb|EFI09832.1| negative regulator of genetic competence ClpC/MecB [Bacteroides sp.
           3_1_19]
          Length = 852

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 20/84 (23%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           LL  +D+           L +K   +D +VQ+++  +      +  P +KP         
Sbjct: 536 LLEMADV-----------LKSKVVGQDDAVQKIVKAIQRNRVGLKDP-NKPIGT------ 577

Query: 112 HVILVVGVNGVGKTTVIGKLSKKM 135
              + +G  GVGKT +  KL++ +
Sbjct: 578 --FMFLGPTGVGKTHLAKKLAEYL 599


>gi|326780280|ref|ZP_08239545.1| carbohydrate kinase, thermoresistant glucokinase family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326660613|gb|EGE45459.1| carbohydrate kinase, thermoresistant glucokinase family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 175

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           PHV++V+GV G GKTT+   L+ ++      V  A GD F   A
Sbjct: 10  PHVVVVMGVAGTGKTTIGPLLAAEL-----GVPYAEGDDFHPPA 48


>gi|294650042|ref|ZP_06727429.1| HrpA family ATP-dependent helicase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824052|gb|EFF82868.1| HrpA family ATP-dependent helicase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 1284

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 71/221 (32%), Gaps = 39/221 (17%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFS------------HRPHV 113
           +  L   +  +   ++++    +  + + L  L K   N D               +  V
Sbjct: 19  LNRLRKDKKTETAEIEKLFEQSNHKVKQRLARLPKIKLNQDLPVTQYADRLIEAIQKHQV 78

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------- 166
           I+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+          
Sbjct: 79  IIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGEKLGESI 137

Query: 167 ---ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSILMAGIGK 217
                F           L  +    A+          D +IID A     N   + G   
Sbjct: 138 GFKIRFNEQGSQDSIVRLMTDGILLAELTNDRFLSKYDTIIIDEAHERSLNIDFIMGY-- 195

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
               LK+L P  P   + V  AT     + +   +   A  
Sbjct: 196 ----LKQLLPKRPDLKVIVTSATL---DVNRFSQYFNDAPI 229


>gi|290969304|ref|ZP_06560829.1| phosphoribulokinase/uridine kinase family protein [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780810|gb|EFD93413.1| phosphoribulokinase/uridine kinase family protein [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 546

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           RY  D ++Q ++ D++E + +  +     +      +  V+L+ G +  GKTT   +L+ 
Sbjct: 250 RYIDDNTIQDIV-DMAEALQEKKLAEIADYIVQQRPKIKVVLISGPSSAGKTTFCKRLTT 308

Query: 134 KMSDAGLKVMLAAGDTF 150
           ++   GL+ +  + D +
Sbjct: 309 QLRVVGLRPVKISLDDY 325


>gi|289548719|ref|YP_003473707.1| arsenite-activated ATPase ArsA [Thermocrinis albus DSM 14484]
 gi|289182336|gb|ADC89580.1| arsenite-activated ATPase ArsA [Thermocrinis albus DSM 14484]
          Length = 408

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                   VIL  G  GVGKTTV    + ++S  G + ++ + D
Sbjct: 3   LGGVRNVRVILFSGKGGVGKTTVSAATAYRLSSLGYRTIVVSLD 46


>gi|262381761|ref|ZP_06074899.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301310233|ref|ZP_07216172.1| negative regulator of genetic competence ClpC/MecB [Bacteroides sp.
           20_3]
 gi|262296938|gb|EEY84868.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300831807|gb|EFK62438.1| negative regulator of genetic competence ClpC/MecB [Bacteroides sp.
           20_3]
          Length = 852

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 20/84 (23%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           LL  +D+           L +K   +D +VQ+++  +      +  P +KP         
Sbjct: 536 LLEMADV-----------LKSKVVGQDDAVQKIVKAIQRNRVGLKDP-NKPIGT------ 577

Query: 112 HVILVVGVNGVGKTTVIGKLSKKM 135
              + +G  GVGKT +  KL++ +
Sbjct: 578 --FMFLGPTGVGKTHLAKKLAEYL 599


>gi|261211115|ref|ZP_05925404.1| adenylylsulfate kinase [Vibrio sp. RC341]
 gi|260839616|gb|EEX66227.1| adenylylsulfate kinase [Vibrio sp. RC341]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            RP V+   G++G GK+TV G L  ++++ G    L  GD  R  
Sbjct: 30  QRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVRHG 74


>gi|253682773|ref|ZP_04863568.1| negative regulator of genetic competence ClpC/MecB [Clostridium
           botulinum D str. 1873]
 gi|253560972|gb|EES90426.1| negative regulator of genetic competence ClpC/MecB [Clostridium
           botulinum D str. 1873]
          Length = 766

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 43  DGVREELEDL-LIRSDIGVAV-------AQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           + +++E ED+ L   DI   +        Q+I EE   K    +  + + +   +E +  
Sbjct: 429 EEIKKESEDIVLTTQDIAFVIEAWTKIPVQRITEEEGEKLINLEDRLHKRVIGQNEGVRS 488

Query: 95  MLMPLSKP-FNWDFSHRPHVILVVGVNGVGKT 125
           +   + +    +    +P   + VG  GVGKT
Sbjct: 489 LAKAIRRNRLGFTKKKKPSSFIFVGPTGVGKT 520


>gi|242089611|ref|XP_002440638.1| hypothetical protein SORBIDRAFT_09g004410 [Sorghum bicolor]
 gi|241945923|gb|EES19068.1| hypothetical protein SORBIDRAFT_09g004410 [Sorghum bicolor]
          Length = 686

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 11/125 (8%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK----LSKKMSDAGLKVML 144
            + +   L   +  F+   S +P V+ +VG+ G+GKTT+  +    L  +        + 
Sbjct: 180 KQEVISFLEEENGCFS---SQQPKVVSIVGIGGIGKTTLANRVYEELKNRFQCRAFLSVS 236

Query: 145 AAGDTFRS--AAIDQL-KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           +    +++   +I QL     +          +        ++  K A +      +I T
Sbjct: 237 SRS-YYKTEVGSIQQLIMEIKEFLQTKRYFIVVDDVWDKETWDTIKCALSDNSCGSVIIT 295

Query: 202 AGRLH 206
             R+H
Sbjct: 296 TTRVH 300


>gi|238618554|ref|YP_002913379.1| LAO/AO transport system ATPase [Sulfolobus islandicus M.16.4]
 gi|238379623|gb|ACR40711.1| LAO/AO transport system ATPase [Sulfolobus islandicus M.16.4]
 gi|323473563|gb|ADX84169.1| LAO/AO transport system ATPase [Sulfolobus islandicus REY15A]
 gi|323476209|gb|ADX81447.1| LAO/AO transport system ATPase [Sulfolobus islandicus HVE10/4]
          Length = 315

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 32/213 (15%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++EE L         +   +  +++     L  LSK      S   HVI + G+ G GK
Sbjct: 8   KLIEEALNGNELAIARLLTKIEYMTDEGISALGALSK-----RSGNAHVIGITGIPGAGK 62

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI---------DQLKIWADRTSADFVCS-EI 174
           +T+IG L ++    G +V +   D      +          Q K          + S   
Sbjct: 63  STLIGGLIQEYVSRGHRVGVIVIDPSSPYTMGSFMGNRLRFQDKTMLKNVFVRSIGSRGY 122

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
               +A A    +       D +II+T G    ++                        +
Sbjct: 123 LGGISAEALMLTEALDGLGYDKIIIETVGAGQTDTE----------------VEQSVHTI 166

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            V+      + ++ ++      G    ++ K D
Sbjct: 167 LVVTIPGAGDDIQALKAGIMEIG-DIYVLNKTD 198


>gi|300774835|ref|ZP_07084698.1| lipid A export ATP-binding/permease protein MsbA [Chryseobacterium
           gleum ATCC 35910]
 gi|300506650|gb|EFK37785.1| lipid A export ATP-binding/permease protein MsbA [Chryseobacterium
           gleum ATCC 35910]
          Length = 612

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 18/112 (16%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE--ELLTKRYAKDVSVQR 83
             L   I+++       +   + + ++L  +D+ +    +I E   + T +   +     
Sbjct: 329 KSLSTSISNVQKG----EASLKRVLEIL-EADVKIE---EIAEPVSITTLKNNIEFKDIG 380

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             YD + LI        K FN        V  +VG +G GKTT+   L++  
Sbjct: 381 FYYDKANLI-------LKNFNLTIPKGKTV-ALVGQSGSGKTTIANLLARFY 424


>gi|224101525|ref|XP_002312316.1| predicted protein [Populus trichocarpa]
 gi|222852136|gb|EEE89683.1| predicted protein [Populus trichocarpa]
          Length = 407

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 22/126 (17%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           S      F  +P +I+VVG+ G GKTT + +L      + ++  +   D     A+  L 
Sbjct: 52  SGQVGPTFKRKPVIIIVVGMAGSGKTTFLHRLVCHTQASRIRGYVLNLD----PAVMTLP 107

Query: 160 IWADRTSADFVCSEIGSDAAALAYEA------------------FKQAQAKKVDVLIIDT 201
             A+    D V  +       L                        + +A ++D +++DT
Sbjct: 108 YGANIDIRDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVIQVIEKRADQLDYVLVDT 167

Query: 202 AGRLHN 207
            G++  
Sbjct: 168 PGQIEI 173


>gi|227829095|ref|YP_002830874.1| LAO/AO transport system ATPase [Sulfolobus islandicus L.S.2.15]
 gi|229577894|ref|YP_002836292.1| LAO/AO transport system ATPase [Sulfolobus islandicus Y.G.57.14]
 gi|229580796|ref|YP_002839195.1| LAO/AO transport system ATPase [Sulfolobus islandicus Y.N.15.51]
 gi|284996482|ref|YP_003418249.1| LAO/AO transport system ATPase [Sulfolobus islandicus L.D.8.5]
 gi|227455542|gb|ACP34229.1| LAO/AO transport system ATPase [Sulfolobus islandicus L.S.2.15]
 gi|228008608|gb|ACP44370.1| LAO/AO transport system ATPase [Sulfolobus islandicus Y.G.57.14]
 gi|228011512|gb|ACP47273.1| LAO/AO transport system ATPase [Sulfolobus islandicus Y.N.15.51]
 gi|284444377|gb|ADB85879.1| LAO/AO transport system ATPase [Sulfolobus islandicus L.D.8.5]
          Length = 315

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 32/213 (15%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++EE L         +   +  +++     L  LSK      S   HVI + G+ G GK
Sbjct: 8   KLIEEALNGNELAIARLLTKIEYMTDEGISALGALSK-----RSGNAHVIGITGIPGAGK 62

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI---------DQLKIWADRTSADFVCS-EI 174
           +T+IG L ++    G +V +   D      +          Q K          + S   
Sbjct: 63  STLIGGLIQEYVSRGHRVGVIVIDPSSPYTMGSFMGNRLRFQDKTMLKNVFVRSIGSRGY 122

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
               +A A    +       D +II+T G    ++                        +
Sbjct: 123 LGGISAEALMLTEALDGLGYDKIIIETVGAGQTDTE----------------VEQSVHTI 166

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            V+      + ++ ++      G    ++ K D
Sbjct: 167 LVVTIPGAGDDIQALKAGIMEIG-DIYVLNKTD 198


>gi|150007731|ref|YP_001302474.1| negative regulator of genetic competence [Parabacteroides
           distasonis ATCC 8503]
 gi|255013564|ref|ZP_05285690.1| negative regulator of genetic competence [Bacteroides sp. 2_1_7]
 gi|256839991|ref|ZP_05545500.1| ATP-dependent chaperone ClpB [Parabacteroides sp. D13]
 gi|149936155|gb|ABR42852.1| negative regulator of genetic competence [Parabacteroides
           distasonis ATCC 8503]
 gi|256738921|gb|EEU52246.1| ATP-dependent chaperone ClpB [Parabacteroides sp. D13]
          Length = 852

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 20/84 (23%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           LL  +D+           L +K   +D +VQ+++  +      +  P +KP         
Sbjct: 536 LLEMADV-----------LKSKVVGQDDAVQKIVKAIQRNRVGLKDP-NKPIGT------ 577

Query: 112 HVILVVGVNGVGKTTVIGKLSKKM 135
              + +G  GVGKT +  KL++ +
Sbjct: 578 --FMFLGPTGVGKTHLAKKLAEYL 599


>gi|53729124|ref|ZP_00134088.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207501|ref|YP_001052726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus pleuropneumoniae L20]
 gi|190149282|ref|YP_001967807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|166224770|sp|A3MY85|MURE_ACTP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|126096293|gb|ABN73121.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189914413|gb|ACE60665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 500

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGV-GKTTVIGKLSKKMSDAGLKVMLAAG--- 147
           + ++L  ++  F  + S +     +VGV G  GKTT    L++  +  G K  +      
Sbjct: 97  LARILSEIAGAFYANPSEKLT---LVGVTGTNGKTTSAQLLAQWHNLLGGKSAVMGTIGN 153

Query: 148 ----DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDT 201
                   +A      I   R  ADFV       A  ++     Q  A+A   D+ +   
Sbjct: 154 GLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEALSYDLAVFTN 213

Query: 202 AGRLHNNSILMAGI 215
             R H +       
Sbjct: 214 LSRDHLDYHKTMEE 227


>gi|331696584|ref|YP_004332823.1| Arsenite-transporting ATPase [Pseudonocardia dioxanivorans CB1190]
 gi|326951273|gb|AEA24970.1| Arsenite-transporting ATPase [Pseudonocardia dioxanivorans CB1190]
          Length = 424

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           V+L  G  GVGKTT+    +  ++ +G K ++ + D
Sbjct: 9   VVLFTGKGGVGKTTLSAATAAHLARSGRKTLVVSTD 44


>gi|320355169|ref|YP_004196508.1| methylmalonyl-CoA mutase metallochaperone MeaB [Desulfobulbus
           propionicus DSM 2032]
 gi|320123671|gb|ADW19217.1| methylmalonyl-CoA mutase metallochaperone MeaB [Desulfobulbus
           propionicus DSM 2032]
          Length = 379

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 34/202 (16%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +  + +    E++  +L           +         GV GVGK+T I      + +
Sbjct: 80  ESNAAQHIEKAQEVLKILLPFTGNSIRVGIT---------GVPGVGKSTFIETFGCHLIE 130

Query: 138 AGLKVMLAAGD-------TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA---YEAFK 187
            G KV + A D               +++  +         S  GS    +A    E   
Sbjct: 131 QGHKVAVLAVDPSSSISGGSILGDKTRMERLSRDERCFIRPSPAGSTLGGVARKTRETML 190

Query: 188 QAQAKKVDVLIIDTAGRLHNNS-----------ILMAGIGKMIRVLKRLDPHAPHSVLQV 236
             +A   DV++I+T G   + +           +++AG G  ++ +K+           V
Sbjct: 191 VCEAAGFDVVLIETVGVGQSETTVRSMVDFFLLLMLAGAGDELQGIKKGIMELAD--ALV 248

Query: 237 LDATTGQNAL--RQVEMFHAVA 256
           ++   G+N L        +  A
Sbjct: 249 INKADGKNKLIAETARAEYERA 270


>gi|312961924|ref|ZP_07776421.1| general secretion pathway protein E [Pseudomonas fluorescens WH6]
 gi|311283734|gb|EFQ62318.1| general secretion pathway protein E [Pseudomonas fluorescens WH6]
          Length = 576

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            +   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 319 LEVLERPHGILLVTGPTGSGKTTTLYTALSRLNPAERKIITVEDPVEYQLEGINQIQV 376


>gi|302334898|ref|YP_003800105.1| membrane protease FtsH catalytic subunit [Olsenella uli DSM 7084]
 gi|301318738|gb|ADK67225.1| membrane protease FtsH catalytic subunit [Olsenella uli DSM 7084]
          Length = 660

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           EE   K    DV+      +  E +   L    +      +  PH +L+VG  G GKT  
Sbjct: 179 EETRPKVKFADVAGIDEAVEELEEVRDFLREPERYRKMG-AKIPHGVLLVGPPGTGKTL- 236

Query: 128 IGK 130
           + K
Sbjct: 237 LAK 239


>gi|289565188|ref|ZP_06445640.1| ATP-dependent Clp protease ATP-binding subunit clpE [Enterococcus
           faecium D344SRF]
 gi|289163009|gb|EFD10857.1| ATP-dependent Clp protease ATP-binding subunit clpE [Enterococcus
           faecium D344SRF]
          Length = 748

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 19/145 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + + ++L      +D +V R    V++ I +  + L+K      S      L VG  GVG
Sbjct: 436 KNLADDLKAHVIGQDNAVDR----VAKAIRRNRVGLNKQNRPIGS-----FLFVGPTGVG 486

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KT +  +L+ ++   G +  +   D          +     + +  + S  G      A 
Sbjct: 487 KTELAKQLAYEL--FGSQDSMIRFDMS--------EYMEKHSVSKLIGSPPGYVGYEEAG 536

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNN 208
           +  ++ +     ++++D   + H +
Sbjct: 537 QLTEKVRRNPYSLVLLDEVEKAHPD 561


>gi|268324524|emb|CBH38112.1| conserved hypothetical protein, CobQ/CobB/MinD/ParA nucleotide
           binding domain family [uncultured archaeon]
          Length = 265

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I V G  GVGKTT+ G L++ ++  G  V+    D
Sbjct: 10  IAVAGKGGVGKTTIAGTLARLLARDGHSVIAVDAD 44


>gi|260775430|ref|ZP_05884327.1| cell division protein FtsH [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608611|gb|EEX34776.1| cell division protein FtsH [Vibrio coralliilyticus ATCC BAA-450]
          Length = 650

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 159 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 212

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 213 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 256

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 257 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 305


>gi|260435012|ref|ZP_05788982.1| uridine kinase [Synechococcus sp. WH 8109]
 gi|260412886|gb|EEX06182.1| uridine kinase [Synechococcus sp. WH 8109]
          Length = 196

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 24/43 (55%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           S    ++ + G +  GKTT+  +L++++S  G   +L + D +
Sbjct: 2   SGAVPLVCICGPSAAGKTTLAARLAEQLSARGRHPLLISCDDY 44


>gi|253999579|ref|YP_003051642.1| ATP-dependent metalloprotease FtsH [Methylovorus sp. SIP3-4]
 gi|253986258|gb|ACT51115.1| ATP-dependent metalloprotease FtsH [Methylovorus sp. SIP3-4]
          Length = 631

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 54/171 (31%), Gaps = 25/171 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                +VSEL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 160 DEAKEEVSELVEFLRDP--TKFQKLGGRIPRGVLMVGPPGTGKT----LLAKAIAGEAKV 213

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       +    +  +A K A      +  ID 
Sbjct: 214 PFFTISGS---------------DFVEMFVGVGAARVRDMFEQAKKAAPCIIF-IDEIDA 257

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            GR                + ++L  +D   P+S + V+ AT   + L + 
Sbjct: 258 VGRHRGAGTGGGNDEREQTLNQMLVEMDGFEPNSGVIVIAATNRADVLDKA 308


>gi|238913784|ref|ZP_04657621.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 586

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 9/129 (6%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  LS   +   S    +I+++G  GVGKTT+   ++ +++  G  V L+  D    AA 
Sbjct: 311 LPSLSSLIDGFASQGHGLIMLMGKGGVGKTTLAAAIAVELARRGYPVHLSTSD---PAAH 367

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
               +            +  ++      +   +          +D  GR      L +  
Sbjct: 368 LTDTLDGSFDGLSVSRIDPQAETERYRQQVMAEQGKN------LDEQGRAVLEEDLRSPC 421

Query: 216 GKMIRVLKR 224
            + I V + 
Sbjct: 422 TEEIAVFQA 430


>gi|222083146|ref|YP_002542549.1| replication protein A [Agrobacterium vitis S4]
 gi|221738526|gb|ACM39364.1| replication protein A [Agrobacterium vitis S4]
          Length = 399

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 90  ELIHKMLMPLSKP---FNWDFSHRPH--VILVVGV-NGVGKTTVIGKLSKKMSDAGLKVM 143
           + + + L    K    ++   S + H  VI VV    G GKTT    L++ ++  G +V+
Sbjct: 89  QALREYLDQNGKNDRRYSPKRSGKEHLQVITVVNFKGGSGKTTTAAHLAQYLALNGYRVL 148

Query: 144 LAAGD 148
               D
Sbjct: 149 AIDLD 153


>gi|315230166|ref|YP_004070602.1| MinD-like septum site-determining protein [Thermococcus barophilus
           MP]
 gi|315183194|gb|ADT83379.1| MinD-like septum site-determining protein [Thermococcus barophilus
           MP]
          Length = 250

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            V++V G  G GKTT    LS   +    +V+   GD +       L       +  +  
Sbjct: 2   AVVIVTGRGGAGKTTTTANLSTYFAQREYRVLAIDGDLYLPN----LGFHFGLENVKYTV 57

Query: 172 SEIGSDAAALAYEAFKQAQAKKV 194
             I  +       A  +     V
Sbjct: 58  HSILKNPNLDPEWAIYKHSHTGV 80


>gi|132348|sp|P05682|REPA_AGRRH RecName: Full=Putative replication protein A
 gi|39114|emb|CAA28527.1| unnamed protein product [Agrobacterium rhizogenes]
 gi|225615|prf||1307244B gene repA
          Length = 404

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 91  LIHKMLMPLSKPFNWDFSHR-----PHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVML 144
           +I K +  + +       HR       VI V+    G GKTT    L++ ++  G +V+ 
Sbjct: 94  VIRKYMDQVGRGNRRYLPHRRGGEQLQVISVMNFKGGSGKTTTAAHLAQYLAMRGYRVLA 153

Query: 145 AAGD 148
              D
Sbjct: 154 IDLD 157


>gi|158313143|ref|YP_001505651.1| ATP-dependent helicase HrpA [Frankia sp. EAN1pec]
 gi|158108548|gb|ABW10745.1| ATP-dependent helicase HrpA [Frankia sp. EAN1pec]
          Length = 1441

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 15/113 (13%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           + +D+    A+     + T+R +  V        VS+   ++L  L             V
Sbjct: 56  LAADV--ETARL---RVETRRASVPVIGYPEELPVSQRRDEILAALRD---------NQV 101

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           +++ G  G GKTT + KL  ++   G++ M+      R AA    +  A+   
Sbjct: 102 VVIAGETGSGKTTQLPKLCLEL-GRGVRGMIGHTQPRRIAARTVAERIAEELG 153


>gi|323452511|gb|EGB08385.1| hypothetical protein AURANDRAFT_64176 [Aureococcus anophagefferens]
          Length = 996

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           L++G NG GK+T++  L+ K   +G  V +   D FR
Sbjct: 61  LLLGANGSGKSTLLKLLAGKHLVSGDNVKVMGTDPFR 97


>gi|289679113|ref|ZP_06500003.1| general secretory pathway protein E [Pseudomonas syringae pv.
           syringae FF5]
          Length = 543

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 286 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 343


>gi|297526458|ref|YP_003668482.1| ABC transporter related protein [Staphylothermus hellenicus DSM
           12710]
 gi|297255374|gb|ADI31583.1| ABC transporter related protein [Staphylothermus hellenicus DSM
           12710]
          Length = 332

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           + E + K    +       F      I+ ++G NG GKTT +  ++  +     +V +  
Sbjct: 7   IIEELTKRFGKVLALKGISFKASVGEIVGLLGPNGAGKTTTLKAIAGALKPTSGRVYVFG 66

Query: 147 GDTFRSAAIDQLKI 160
            D+FR    +Q+K+
Sbjct: 67  YDSFR----EQVKV 76


>gi|253682398|ref|ZP_04863195.1| general secretion pathway protein E [Clostridium botulinum D str.
           1873]
 gi|253562110|gb|EES91562.1| general secretion pathway protein E [Clostridium botulinum D str.
           1873]
          Length = 502

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 17/101 (16%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +KIV  +L K +  D+ ++ ++ D  +L         K       H   ++LV G  G G
Sbjct: 219 EKIVIRILYK-FNNDIQLENLIKDNKDL---------KLIKDILKHSNGIVLVTGPTGSG 268

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAG--DT--FRSAAIDQLKI 160
           KTT    L   +++   K        D   ++ + I+Q+ +
Sbjct: 269 KTTT---LCAMLNNLNSKEKNIITVEDPVEYQISGINQMNV 306


>gi|239940138|ref|ZP_04692075.1| putative gluconokinase [Streptomyces roseosporus NRRL 15998]
 gi|239986626|ref|ZP_04707290.1| putative gluconokinase [Streptomyces roseosporus NRRL 11379]
 gi|291443568|ref|ZP_06582958.1| gluconokinase [Streptomyces roseosporus NRRL 15998]
 gi|291346515|gb|EFE73419.1| gluconokinase [Streptomyces roseosporus NRRL 15998]
          Length = 175

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           PHV++V+GV G GKTT+   L+ ++      V  A GD F   A
Sbjct: 10  PHVVVVMGVAGTGKTTIGPLLAAEL-----GVPYAEGDDFHPPA 48


>gi|313125142|ref|YP_004035406.1| daunorubicin resistance ABC transporter ATP-binding subunit
           [Halogeometricum borinquense DSM 11551]
 gi|312291507|gb|ADQ65967.1| daunorubicin resistance ABC transporter ATP-binding subunit
           [Halogeometricum borinquense DSM 11551]
          Length = 377

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 11/111 (9%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
            +G NG GKTT I  L+  +      V +   D        +    A R S  ++  E  
Sbjct: 78  FLGPNGAGKTTTIKTLAALLRPNLGSVSINGFDI-------ENDSKAVRESIGYMAQETS 130

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            D A  A E  + A     D+  +    R      L+A +       KR +
Sbjct: 131 VDEALTARENVRFA----CDIYGVPAGERDERVDELLALVNLTHVADKRAE 177


>gi|254514293|ref|ZP_05126354.1| LAO/AO transport system ATPase [gamma proteobacterium NOR5-3]
 gi|219676536|gb|EED32901.1| LAO/AO transport system ATPase [gamma proteobacterium NOR5-3]
          Length = 322

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 66/208 (31%), Gaps = 36/208 (17%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + S+     +  +L+  +L           S         GV GVGK+T I    + +  
Sbjct: 25  ESSLPAHREEAQQLLEALLPYTGNSVRIGIS---------GVPGVGKSTFIESFGQLLLA 75

Query: 138 AGLKVMLAAGDTFRSAA----------IDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
           AG +V + A D     A          ++QL    +               A    E   
Sbjct: 76  AGHRVAVLAVDPSSPVAGGSIMGDKTRMEQLSREENVFIRPTPSGGTLGGVAQKTRETIL 135

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A   DV+I++T G   +                ++       +L +L    G + L+
Sbjct: 136 LCEAAGYDVIIVETVGVGQSE--------------FQVAGMVDFFMLLMLPG--GGDELQ 179

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGL 275
            ++          +++ K DG   G   
Sbjct: 180 GIKKGIVELA-DAMVINKSDGDGEGIAA 206


>gi|218197446|gb|EEC79873.1| hypothetical protein OsI_21375 [Oryza sativa Indica Group]
 gi|222634844|gb|EEE64976.1| hypothetical protein OsJ_19890 [Oryza sativa Japonica Group]
          Length = 617

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 11/151 (7%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTV 127
           ++  +   KD   +       +   +   P S     D +HRP + I+++GV+G GK+TV
Sbjct: 389 DMKPEAMLKDSETRNKFSRNHQGTDRDEPPSSSMAASDLTHRPGLAIVIMGVSGCGKSTV 448

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L+       L       D + S A       A  +    +             +A +
Sbjct: 449 AALLA-----ETLGCSFIEADDYHSQANK-----AKMSKGIPLTDGDRIPWLEALRDAVR 498

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           +      DV +  +A +     IL  G    
Sbjct: 499 ERLDHGEDVAVSCSALQQKYREILREGDCSF 529


>gi|297619992|ref|YP_003708097.1| AAA family ATPase [Methanococcus voltae A3]
 gi|297378969|gb|ADI37124.1| AAA family ATPase, CDC48 subfamily [Methanococcus voltae A3]
          Length = 781

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 45/118 (38%), Gaps = 25/118 (21%)

Query: 30  EGITDIISSRRLD--DGVREELEDLLIRSDIGVAVAQ-KIVEELLT------KRYAKDVS 80
           + +  ++ ++++D  + + +E+ + L        V +    + L        +    DV 
Sbjct: 456 KSLRKLLDNKKIDLDEEIPKEVLETL-------KVTKTDFYDALKEVEPSTLREVLVDVP 508

Query: 81  VQRVLYD--VSELIHKMLMPLSKPFNWDFS------HRPHVILVVGVNGVGKTTVIGK 130
             + +    + ++  +++  +  P  +           P  IL+ G  G GKT  + K
Sbjct: 509 DIKWVDIGGLEDVKQELIEAVEWPLKYPDKFTKMGIRPPKGILLYGAPGTGKTL-LAK 565


>gi|158430327|pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
           Form
 gi|158430328|pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
           Form
          Length = 337

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           + L + L+  D   A+A+ I   L   R A           V +LI  +L    +     
Sbjct: 9   DTLRERLLAGD-RAALARAIT--LAESRRA------DHRAAVRDLIDAVLPQTGRAIRVG 59

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAA-IDQLKIWAD 163
            +         GV GVGK+T I  L   ++ AG KV + A D  + R+   I   K    
Sbjct: 60  IT---------GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRXA 110

Query: 164 RTSADFVC-------SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R + D          S      AA   E     +A   DV++++T G   + + 
Sbjct: 111 RLAIDRNAFIRPSPSSGTLGGVAAKTRETXLLCEAAGFDVILVETVGVGQSETA 164


>gi|118593235|ref|ZP_01550620.1| arginine/ornithine transport system ATPase [Stappia aggregata IAM
           12614]
 gi|118434126|gb|EAV40782.1| arginine/ornithine transport system ATPase [Stappia aggregata IAM
           12614]
          Length = 332

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 14/146 (9%)

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             A+ +++          + + L+    P   +       + + GV GVGK+T I  L  
Sbjct: 24  ALARSITLVESRKREHRRLAQHLIQDLLPLTGNALR----VGITGVPGVGKSTTIDTLGS 79

Query: 134 KMSDAGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSADFVCSEIGSDAAALAY 183
            ++ AG +V + A D  + R+          + QL +  +        +      AA   
Sbjct: 80  NLTAAGHRVAVLAVDPSSTRTGGSILGDKTRMAQLAVDPNAFIRPSPSAGTLGGVAAKTR 139

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNS 209
           E     +A   DV++++T G   + +
Sbjct: 140 ETMLLCEAAGYDVILVETVGIGQSET 165


>gi|297581400|ref|ZP_06943323.1| adenylylsulfate kinase [Vibrio cholerae RC385]
 gi|297534238|gb|EFH73076.1| adenylylsulfate kinase [Vibrio cholerae RC385]
          Length = 215

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           + L  ++ AK  +V    + V +     L             RP V+   G++G GK+TV
Sbjct: 6   DSLRFEQDAKPENVVWHRHAVDKAQRAALKQ----------QRPAVLWFTGLSGAGKSTV 55

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSA 153
            G L  +++  G    L  GD  R  
Sbjct: 56  AGALENRLAALGYHTYLLDGDNVRHG 81


>gi|315641186|ref|ZP_07896263.1| ATP-dependent Clp protease [Enterococcus italicus DSM 15952]
 gi|315482953|gb|EFU73472.1| ATP-dependent Clp protease [Enterococcus italicus DSM 15952]
          Length = 763

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 75/208 (36%), Gaps = 40/208 (19%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGV 60
           +  ++V+ E +  I         T  KL E  T I         ++E+ +  L       
Sbjct: 411 LKEKQVSDEDIPVIT------EKTMEKLVEQRTGIPVG-----ELKEKEQTQL------- 452

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
              + + +++      +D +V +    V++ I +  + L K      S      L VG  
Sbjct: 453 ---RNLADDIKKHVIGQDEAVDK----VAKAIRRNRIGLGKKNRPIGS-----FLFVGPT 500

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKT +  +L+ ++   G    +   D          +     + +  + S  G     
Sbjct: 501 GVGKTELAKQLAYEL--FGSTESMIRFDMS--------EYMEKHSVSKLIGSPPGYVGYE 550

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            A +  +Q +     ++++D   + H +
Sbjct: 551 EAGQLTEQVRRNPYSLILLDEIEKAHPD 578


>gi|307307530|ref|ZP_07587263.1| hypothetical protein Sbal175DRAFT_4320 [Shewanella baltica BA175]
 gi|306910107|gb|EFN40542.1| hypothetical protein Sbal175DRAFT_4320 [Shewanella baltica BA175]
          Length = 220

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 113 VILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI-DQLKIWADRTSADF 169
            I++VG    GVGK+T+   ++ +++ +G  V +   D  +S +   Q +   +      
Sbjct: 2   TIILVGAQKGGVGKSTIAASIAVELAHSGQDVCIVDADKQQSLSKWHQYRSELEDLPTVN 61

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             S  G+ A  L      +   ++  VL++D AGR    
Sbjct: 62  CVSATGNIATTL------KDLNQRYGVLVVDVAGRDSIE 94


>gi|296134441|ref|YP_003641688.1| Cobyrinic acid ac-diamide synthase [Thermincola sp. JR]
 gi|296033019|gb|ADG83787.1| Cobyrinic acid ac-diamide synthase [Thermincola potens JR]
          Length = 262

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I V G  GVGKTTV G L++  +  G +V+    D
Sbjct: 3   IAVTGKGGVGKTTVSGTLARIFAADGYRVLAIDCD 37


>gi|262278062|ref|ZP_06055847.1| cell division protein [Acinetobacter calcoaceticus RUH2202]
 gi|262258413|gb|EEY77146.1| cell division protein [Acinetobacter calcoaceticus RUH2202]
          Length = 631

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 25/168 (14%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  + + +++  L  P  +    +  P  +L+VG  G GKT     L+K ++        
Sbjct: 164 EAKQEVVEIVDFLKDPAKFKRLGATIPRGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 219

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           +   +                  +       S    +  +A + A      +  ID  GR
Sbjct: 220 SISGS---------------DFVEMFVGVGASRVRDMFEQAKRHAPCIIF-IDEIDAVGR 263

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                           + ++L  +D    +  + V+ AT   + L + 
Sbjct: 264 HRGSGTGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRADVLDKA 311


>gi|239905766|ref|YP_002952505.1| hypothetical protein DMR_11280 [Desulfovibrio magneticus RS-1]
 gi|239795630|dbj|BAH74619.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 292

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGL 140
           ++ L D++E I        KP          VI+V+ G  GVGK+TV   L+  ++  GL
Sbjct: 3   EQGLRDLNEEI------GGKPKAAGLDQVRSVIVVLSGKGGVGKSTVAANLAAGLAMEGL 56

Query: 141 KVMLAAGDT 149
           +  L   D 
Sbjct: 57  RTGLLDVDV 65


>gi|228577408|gb|AAC83387.2| RepA [Paracoccus versutus]
 gi|238683598|gb|ACR54083.1| RepA [Paracoccus versutus]
          Length = 397

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRP----HVILVVGV-NGVGKTTVIGKLSKKMSDAG 139
           L DV E+   +     KP  +    R      VI VV    G GKTT    L+++++  G
Sbjct: 82  LDDVWEIRQSLEANAKKPGTYVPGRRKGDELQVISVVNFKGGSGKTTTSAHLAQRLAFKG 141

Query: 140 LKVMLAAGD 148
            +V+    D
Sbjct: 142 YRVLAIDLD 150


>gi|225685357|ref|YP_002729739.1| DNA replication protein DnaC [Persephonella marina EX-H1]
 gi|225646777|gb|ACO04962.1| DNA replication protein DnaC [Persephonella marina EX-H1]
          Length = 241

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
            V++++++ L   +  +DVS++  L  +S+   K L  +          + + ++ VG  
Sbjct: 26  KVSKEVIKALNIPKRYEDVSLENFL-LLSKEHKKALSIVKSYIELKAFQKGNGLMFVGPP 84

Query: 121 GVGKT 125
           G GKT
Sbjct: 85  GTGKT 89


>gi|225376366|ref|ZP_03753587.1| hypothetical protein ROSEINA2194_02007 [Roseburia inulinivorans DSM
           16841]
 gi|225211742|gb|EEG94096.1| hypothetical protein ROSEINA2194_02007 [Roseburia inulinivorans DSM
           16841]
          Length = 323

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 9/101 (8%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+ G  G GKTT + K ++ +   G  + +   D     A++   +       D    E+
Sbjct: 14  LITGFLGAGKTTFLKKYAEYLIAKGQNIGILENDF---GAVNVDMMLLQDLMGDNCELEM 70

Query: 175 GSDAAALAYEA------FKQAQAKKVDVLIIDTAGRLHNNS 209
            S                        D +I++ +G    + 
Sbjct: 71  VSGGCDADCHRRRFKTKLIAMGMCGYDRVIVEPSGIFDVDE 111


>gi|158424211|ref|YP_001525503.1| ATPase [Azorhizobium caulinodans ORS 571]
 gi|158331100|dbj|BAF88585.1| ATPase [Azorhizobium caulinodans ORS 571]
          Length = 879

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 52/160 (32%), Gaps = 30/160 (18%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           +E+ ++L     G+    +       +   +       +  V++ I      ++ P    
Sbjct: 568 DEIRNVL-----GLQATME------QRVVGQ----SHAIAAVAQAIRTSRAGMTDP---- 608

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
                 V L+VG +GVGKT     L+ ++      +       ++           +   
Sbjct: 609 -RKPLGVFLMVGPSGVGKTETALTLADQLYGGEQNLTTINMSEYK----------EEHKV 657

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLH 206
           +  + S  G           +  + +   V+++D   + H
Sbjct: 658 SLLMGSPPGYVGYGEGGVLTEAVRRRPYSVILLDEMEKAH 697


>gi|24374978|ref|NP_719021.1| putative ABC transporter ATP-binding protein [Shewanella oneidensis
           MR-1]
 gi|24349704|gb|AAN56465.1|AE015783_8 ABC transporter, ATP-binding protein [Shewanella oneidensis MR-1]
          Length = 555

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 23/127 (18%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I V+G+NG GK+T++              ++A  DT     I+            ++  E
Sbjct: 35  IGVLGLNGSGKSTLL-------------RIMAGIDT----EIEGEARPMPGLKIGYLPQE 77

Query: 174 IGSDAAALAYEAFKQAQAK------KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              D      EA ++A ++      ++D +    A    +   L    G++  +++  D 
Sbjct: 78  PKLDPNQTVREAIEEAVSEAKNALKRLDEVYAAYAEPDADFDALAKEQGELEAIIQAQDA 137

Query: 228 HAPHSVL 234
           H   ++L
Sbjct: 138 HNLDNIL 144


>gi|50083987|ref|YP_045497.1| putative ATP-binding protein [Acinetobacter sp. ADP1]
 gi|49529963|emb|CAG67675.1| putative ATP-binding protein [Acinetobacter sp. ADP1]
          Length = 417

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 102 PFNWDFSHRP---HVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           P   +    P   +VILV  G  GVGK+T    L+  +   GLKV +   D +
Sbjct: 147 PIQSEVPAHPRIKNVILVSSGKGGVGKSTTTVNLALALQKQGLKVGVLDADIY 199


>gi|119774150|ref|YP_926890.1| putative ABC transporter ATP-binding protein [Shewanella
           amazonensis SB2B]
 gi|119766650|gb|ABL99220.1| ABC transporter, ATP-binding protein [Shewanella amazonensis SB2B]
          Length = 555

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 23/127 (18%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I V+G+NG GK+T++              ++A  DT     I+            ++  E
Sbjct: 35  IGVLGLNGSGKSTLL-------------RIMAGIDT----EIEGEARPMPGLKIGYLPQE 77

Query: 174 IGSDAAALAYEAFKQA------QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              D      EA ++A         ++D +    A    +   L    G++  +++  D 
Sbjct: 78  PQLDPNQTVREAIEEAVGDAKRALTRLDEVYAAYAEPDADFDALAKEQGELEAIIQAQDA 137

Query: 228 HAPHSVL 234
           H   ++L
Sbjct: 138 HNLDNIL 144


>gi|326803796|ref|YP_004321614.1| negative regulator of genetic competence ClpC/MecB [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651306|gb|AEA01489.1| negative regulator of genetic competence ClpC/MecB [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 729

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 80/211 (37%), Gaps = 34/211 (16%)

Query: 47  EELEDLLIRSDIGVAVAQ----------KIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
           E++E+ L+ +  G+ V Q          ++ +EL      +D +V++    VS  I +  
Sbjct: 393 EDIEE-LVEAKTGIPVGQLQDQEQSNLLQLEDELKETIIGQDPAVEK----VSAAIRRNR 447

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           +          +      L VG  GVGKT +  +L+K++   G +  +   D        
Sbjct: 448 VGF-----HPGNKPIASFLFVGPTGVGKTELARQLAKQL--FGSEEAMIRFDMS------ 494

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS----ILM 212
             +     + +  + S  G      A +  +Q + +   ++++D   + H +     + +
Sbjct: 495 --EYMEKHSVSKMIGSPPGYVGYDEAGQLTEQVRRQPYSLILLDEVEKAHPDVLNLFLQI 552

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
              G++     R        ++   +A TG 
Sbjct: 553 MEDGRLTDAQGRTVSFKDTLIIMTSNAGTGN 583


>gi|326512682|dbj|BAJ99696.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 808

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 69/209 (33%), Gaps = 39/209 (18%)

Query: 57  DIGVAVA-----QKIVEELLTKRYAKDVSVQRV--LYDVSELIHKM-LMPLSKP--FNWD 106
           D+G  V      +K++   +       V+   +  L D+ E + ++ ++PL +P  FN  
Sbjct: 435 DVGKKVTPDNEFEKLIRPTVVPASQIGVTFDDIGALTDIKESLQELVMLPLKRPELFNGG 494

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
                  IL+ G  G GKT     L+K +++               A    L I      
Sbjct: 495 LLKPCKGILLFGPPGTGKTM----LAKALANE--------------AGASFLNISLSTIM 536

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           + +      +   AL   A K A A    ++ +D    L              R+     
Sbjct: 537 SKYYGDAEKTI-RALFSLATKLAPA----IIFVDEVDSLLGQRDQRNENELPRRIKNEFM 591

Query: 227 PHAP------HSVLQVLDATTGQNALRQV 249
            H        +  + VL AT     L + 
Sbjct: 592 THWDGLLSNSNERILVLAATNRPFDLDEA 620


>gi|323703285|ref|ZP_08114936.1| Sigma 54 interacting domain protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531750|gb|EGB21638.1| Sigma 54 interacting domain protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 646

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 34/134 (25%)

Query: 26  LKLKEGITDIISSRRLDDGVRE---------------ELEDLLIRSDIGVAVAQ-----K 65
             ++E I D I+ R +++ + +               E++  +I+ + G   AQ      
Sbjct: 94  ESIQEEIADTIARRTVEEELEKKIGEKMIQRHEDYYREIKMQVIKENAGPENAQTLKRLA 153

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELI------HKMLMPLSKPFNWDFSHRPHVILVVGV 119
           I+E+L +K  A            +E+I        +L  L+ PF       P  I++ G 
Sbjct: 154 ILEKLDSKHLAASAMEVLRPASFAEVIGQERAVKALLAKLASPF-------PQHIILYGP 206

Query: 120 NGVGKTTVIGKLSK 133
            GVGKTT   +L+ 
Sbjct: 207 PGVGKTT-AARLAL 219


>gi|297194520|ref|ZP_06911918.1| ABC transporter ATP-binding protein [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297152295|gb|EFH31644.1| ABC transporter ATP-binding protein [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 640

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFS 108
           L++S  GVA A++I E L  +    D      L      +    +       KP   D S
Sbjct: 358 LVQS--GVASAERIFELLDAEEQESDAPSAEQLERPRGEVSLEKVSFRYDPDKPLIEDLS 415

Query: 109 ---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                 H + +VG  G GKTT++  L +     G ++ L   D
Sbjct: 416 LAVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVD 458


>gi|296134456|ref|YP_003641703.1| Sigma 54 interacting domain protein [Thermincola sp. JR]
 gi|296033034|gb|ADG83802.1| Sigma 54 interacting domain protein [Thermincola potens JR]
          Length = 649

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ-----KIVEELLTKRYAKDVS 80
            KL++ I D +  R   +   +E++  +++   G   AQ      I+E++  K+ AK   
Sbjct: 113 DKLEKKIADRMQQRH--EEYVKEIKMQILKESAGPENAQTLKKLAILEKMEHKKLAKSAM 170

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
                    E++ +    +    +   S  P  I++ G  GVGKTT   +L+ K +  
Sbjct: 171 EALRPTSFEEIVGQER-AIRSLLSKIVSPFPQHIILYGPPGVGKTT-AARLALKKAKE 226


>gi|296128755|ref|YP_003636005.1| capsular exopolysaccharide family [Cellulomonas flavigena DSM
           20109]
 gi|296020570|gb|ADG73806.1| capsular exopolysaccharide family [Cellulomonas flavigena DSM
           20109]
          Length = 496

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 64/187 (34%), Gaps = 41/187 (21%)

Query: 107 FSHRPHVILVVG-VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---------AAI- 155
            +HR  VI+V   + G GKTT    L+  ++++G +V+L  GD  R           A+ 
Sbjct: 260 ATHRMQVIVVTSPLAGEGKTTTSCNLAIALAESGRRVLLVEGDLRRPRVSRALGLEGAVG 319

Query: 156 ------------DQLKIWADR----TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
                       D ++ W         A  +         +    AF Q   ++ DV+I+
Sbjct: 320 LTNVLVGQVEEADVIQQWGPHGLFVLPAGTLPPNPSELLGSDKMRAFVQRMRQRFDVVIL 379

Query: 200 DTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG-- 257
           DT         L      +         HA   VL V    T ++  R       V    
Sbjct: 380 DTP------PTLPVTDATI------AAAHADSVVLVVRYGHTTRDQARSAVESLRVVDAP 427

Query: 258 TTGLIMT 264
             G+I+ 
Sbjct: 428 LAGVIIN 434


>gi|262118820|pdb|3KB1|A Chain A, Crystal Structure Of The Nucleotide-Binding Protein Af_226
           In Complex With Adp From Archaeoglobus Fulgidus,
           Northeast Structural Genomics Consortium Target Gr157
 gi|262118821|pdb|3KB1|B Chain B, Crystal Structure Of The Nucleotide-Binding Protein Af_226
           In Complex With Adp From Archaeoglobus Fulgidus,
           Northeast Structural Genomics Consortium Target Gr157
          Length = 262

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           G  GVGK+TV   L+   +  G KV +   D 
Sbjct: 26  GKGGVGKSTVTALLAVHYAKQGKKVGILDADF 57


>gi|326201689|ref|ZP_08191560.1| ABC transporter related protein [Clostridium papyrosolvens DSM
           2782]
 gi|325988289|gb|EGD49114.1| ABC transporter related protein [Clostridium papyrosolvens DSM
           2782]
          Length = 518

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 64  QKIVEELLTKRY-----AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             I+E++  K        +  +  R ++    L+     PLS   N        V  V G
Sbjct: 299 MDIIEKVKEKAKPIFKFREARAPGRYIFQTENLVIGYEEPLSSQLNISLERGQKV-AVKG 357

Query: 119 VNGVGKTT 126
           VNG+GK+T
Sbjct: 358 VNGLGKST 365


>gi|237653195|ref|YP_002889509.1| general secretory pathway protein E [Thauera sp. MZ1T]
 gi|237624442|gb|ACR01132.1| general secretory pathway protein E [Thauera sp. MZ1T]
          Length = 477

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 96  LMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVI 128
           + P +     D   RPH IL+V G  G GKTT +
Sbjct: 227 MAPDTSAVFADLLARPHGILLVTGPTGSGKTTTL 260


>gi|163869122|ref|YP_001610361.1| cell division protein FtsH [Bartonella tribocorum CIP 105476]
 gi|161018808|emb|CAK02366.1| cell division protein FtsH [Bartonella tribocorum CIP 105476]
          Length = 722

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 65  KIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +++ E   +   KDV+ V+    D+ E++  +  P  + F       P  +L+VG  G G
Sbjct: 144 RLLNEAQGRVTFKDVAGVEEAKQDLQEIVEFLREP--QKFQRLGGRIPRGVLLVGPPGTG 201

Query: 124 KT 125
           KT
Sbjct: 202 KT 203


>gi|145546005|ref|XP_001458686.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426507|emb|CAK91289.1| unnamed protein product [Paramecium tetraurelia]
          Length = 647

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 21/171 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            DV       +  E I + L    K +    +  P  IL+VG  G GKT     L++ ++
Sbjct: 217 NDVLGIDEFKEELEEIVEFLKN-PKKYTDSGAKLPKGILLVGPPGTGKT----LLARALA 271

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                       +      D++ +    +    +     + A ++ +          +D 
Sbjct: 272 GEAGCAFFYKSGS----EFDEMFVGVGASRVREIFKAARAKAPSIIF----------IDE 317

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             ID+ G              + ++L  +D       + V+ AT  +  L 
Sbjct: 318 --IDSIGGRRRAQDPGYSRDTINQILTEMDGFKQTESVIVIGATNFEQVLD 366


>gi|124028282|ref|YP_001013602.1| GTPase [Hyperthermus butylicus DSM 5456]
 gi|123978976|gb|ABM81257.1| conserved hypothetical ATP binding protein [Hyperthermus butylicus
           DSM 5456]
          Length = 253

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 19/146 (13%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSA------------AIDQL 158
           +++ VG  G GK+T++   SK + + G+ V     D    R+             A +  
Sbjct: 5   IVVFVGPAGSGKSTLVAAYSKWLREGGIPVYTVNLDPAVDRTPYEPDFDVRTIVDAREIA 64

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           + +    +   V S         A     +  +   D +++DT G       L   +   
Sbjct: 65  RKYGLGPNGALVKSMEFIAENLEAI--LSKIASTDTDYVLVDTPG--QMEVFLFRDLAWR 120

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQN 244
           +    +      +++  +LDA+  ++
Sbjct: 121 LGEGLKKISEQSYAI-FILDASVIKD 145


>gi|58430431|dbj|BAD18008.2| plastid division site determinant MinD [Physcomitrella patens]
          Length = 368

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 15/170 (8%)

Query: 107 FSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               P V+++  G  GVGKTT    L   ++    KV+    D       +   +     
Sbjct: 94  VGEIPRVVVITSGKGGVGKTTTTANLGMCLARLNFKVVAIDADV---GLRNLDLLLGLEN 150

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG---KMIRVL 222
             ++   E+ +    L     +  +    ++L I+   +      L  G      ++  L
Sbjct: 151 RVNYTAMEVLNGECRLDQALIRDKRWTNFELLCIN---KPRYKMPLGFGGKALTWLVDAL 207

Query: 223 KRLDPHAPHSVLQVLDATTGQNA--LRQVEMFHAVAGTTGLIMTKM-DGT 269
           K+     PH +L  +D   G +A  +  +         T   +T + D  
Sbjct: 208 KKRPEGQPHFIL--IDCPAGIDAGFITAITPAKEAILVTTPDITSLRDAD 255


>gi|78485456|ref|YP_391381.1| AAA ATPase [Thiomicrospira crunogena XCL-2]
 gi|78363742|gb|ABB41707.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Thiomicrospira
           crunogena XCL-2]
          Length = 748

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 78/206 (37%), Gaps = 17/206 (8%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRP 111
           I ++I      +I ++   K    + S+QRV++   E +H ++    L++    +     
Sbjct: 429 IVANIARIPVSQITQKEKDKLMNLEESLQRVVFGQDEAVHSVVSAIKLARSGLNEGDRPT 488

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
              L  G  GVGKT +  +L+K +    L+  ++          + ++  +         
Sbjct: 489 ASFLFAGPTGVGKTELTQQLAKHLDIELLRYDMS----------EYMERHSVSRLIGAPP 538

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN--SILMAGIGKMIRVLKRLDPHA 229
             +G D   L  EA          V+++D   + H +  ++L+  +              
Sbjct: 539 GYVGFDQGGLLTEAV---NKHPHSVVLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKAD 595

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAV 255
             +V+ ++ +  G  A  +  +  AV
Sbjct: 596 FRNVILIMTSNVGAEAASRASIGFAV 621


>gi|4689223|gb|AAD27815.1|AF118127_1 disease resistance protein I2 [Solanum lycopersicum]
          Length = 1266

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 57/137 (41%), Gaps = 23/137 (16%)

Query: 4   QKVASESLSWIRKLT-----KGFASTSLKLKEGITDIISSRRLDD--GVREELEDL--LI 54
           ++V  E+L    +L      + F+ TS +       +    +L+D     ++L++   L+
Sbjct: 89  EEVNYEAL----RLKVEGQHQNFSETSNQQVSDDFFLNIKDKLEDTIETLKDLQEQIGLL 144

Query: 55  RSDIGVAVAQKI-VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
               G+   +     +L T+R +  V  +  ++     I  ++  L          +  V
Sbjct: 145 ----GLK--EYFDSTKLETRRPSTSVDDESDIFGRQSEIEDLIDRLLSEGASG--KKLTV 196

Query: 114 ILVVGVNGVGKTTVIGK 130
           + +VG+ G GKTT + K
Sbjct: 197 VPIVGMGGQGKTT-LAK 212


>gi|20090664|ref|NP_616739.1| hypothetical protein MA1813 [Methanosarcina acetivorans C2A]
 gi|19915711|gb|AAM05219.1| hypothetical protein MA_1813 [Methanosarcina acetivorans C2A]
          Length = 764

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 38  SRRLDDGV---REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           S+ + D +   RE+ E+ L   D+  +  ++I+ E+      +DV     + ++ + + +
Sbjct: 450 SKEILDALQVTREDFENAL--KDVQPSAIREILIEVPN-VSWEDVGGLERVKELLKEVVE 506

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
             +   + +       P  +L+ G  G GKT +   ++ 
Sbjct: 507 WPLKNPESYRDIGVEAPKGVLLYGPPGTGKTLLAKAIAH 545


>gi|220930906|ref|YP_002507814.1| ATP-dependent metalloprotease FtsH [Halothermothrix orenii H 168]
 gi|310943131|sp|B8D065|FTSH_HALOH RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|219992216|gb|ACL68819.1| ATP-dependent metalloprotease FtsH [Halothermothrix orenii H 168]
          Length = 630

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 29/220 (13%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            K   +DV+    + +  + + + L    K F    +  P  +L+VG  G GKT     L
Sbjct: 158 KKVTFEDVANYEEVKEELQEVVEFLKNPDK-FTRMGAKVPKGVLLVGPPGTGKT----LL 212

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-Q 190
           ++ ++            +                  +       S    L  +  K A  
Sbjct: 213 ARAVAGEAGVPFFIISGS---------------DFVEMFVGVGASRVRDLFEQGKKNAPC 257

Query: 191 AKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              +D L  D  GR     +          + ++L  +D   P+  + V+ AT   + L 
Sbjct: 258 IIFIDEL--DAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFEPNEGIIVMAATNRPDVLD 315

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
              +         +++ K D   R G ++ I +    PV 
Sbjct: 316 PALLRPGRFD-RQVVVDKPDVKGRMG-ILKIHLR-NKPVA 352


>gi|15642553|ref|NP_232186.1| adenylylsulfate kinase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587882|ref|ZP_01677638.1| adenylylsulfate kinase [Vibrio cholerae 2740-80]
 gi|153818020|ref|ZP_01970687.1| adenylylsulfate kinase [Vibrio cholerae NCTC 8457]
 gi|153823546|ref|ZP_01976213.1| adenylylsulfate kinase [Vibrio cholerae B33]
 gi|227082675|ref|YP_002811226.1| adenylylsulfate kinase [Vibrio cholerae M66-2]
 gi|229507389|ref|ZP_04396894.1| adenylylsulfate kinase [Vibrio cholerae BX 330286]
 gi|229509686|ref|ZP_04399167.1| adenylylsulfate kinase [Vibrio cholerae B33]
 gi|229516811|ref|ZP_04406257.1| adenylylsulfate kinase [Vibrio cholerae RC9]
 gi|229606896|ref|YP_002877544.1| adenylylsulfate kinase [Vibrio cholerae MJ-1236]
 gi|254851098|ref|ZP_05240448.1| sulfate adenylyltransferase subunit 1 [Vibrio cholerae MO10]
 gi|255744471|ref|ZP_05418423.1| adenylylsulfate kinase [Vibrio cholera CIRS 101]
 gi|262154706|ref|ZP_06028832.1| adenylylsulfate kinase [Vibrio cholerae INDRE 91/1]
 gi|298500617|ref|ZP_07010421.1| adenylylsulfate kinase [Vibrio cholerae MAK 757]
 gi|12230020|sp|Q9KP21|CYSC_VIBCH RecName: Full=Adenylyl-sulfate kinase; AltName: Full=APS kinase;
           AltName: Full=ATP adenosine-5'-phosphosulfate
           3'-phosphotransferase; AltName:
           Full=Adenosine-5'-phosphosulfate kinase
 gi|9657143|gb|AAF95699.1| adenylylsulfate kinase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547852|gb|EAX57937.1| adenylylsulfate kinase [Vibrio cholerae 2740-80]
 gi|126511455|gb|EAZ74049.1| adenylylsulfate kinase [Vibrio cholerae NCTC 8457]
 gi|126518930|gb|EAZ76153.1| adenylylsulfate kinase [Vibrio cholerae B33]
 gi|227010563|gb|ACP06775.1| adenylylsulfate kinase [Vibrio cholerae M66-2]
 gi|229345874|gb|EEO10846.1| adenylylsulfate kinase [Vibrio cholerae RC9]
 gi|229353160|gb|EEO18099.1| adenylylsulfate kinase [Vibrio cholerae B33]
 gi|229354894|gb|EEO19815.1| adenylylsulfate kinase [Vibrio cholerae BX 330286]
 gi|229369551|gb|ACQ59974.1| adenylylsulfate kinase [Vibrio cholerae MJ-1236]
 gi|254846803|gb|EET25217.1| sulfate adenylyltransferase subunit 1 [Vibrio cholerae MO10]
 gi|255737996|gb|EET93389.1| adenylylsulfate kinase [Vibrio cholera CIRS 101]
 gi|262030546|gb|EEY49184.1| adenylylsulfate kinase [Vibrio cholerae INDRE 91/1]
 gi|297540786|gb|EFH76843.1| adenylylsulfate kinase [Vibrio cholerae MAK 757]
          Length = 215

 Score = 37.1 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            RP V+   G++G GK+TV G L  +++  G    L  GD  R  
Sbjct: 37  QRPAVLWFTGLSGAGKSTVAGALENRLAALGYHTYLLDGDNVRHG 81


>gi|325121715|gb|ADY81238.1| ClpA/B type protease [Acinetobacter calcoaceticus PHEA-2]
          Length = 893

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 70/199 (35%), Gaps = 23/199 (11%)

Query: 59  GVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           G+ V + + +E+        +  + V  Q   Y +++L+  +    SK    D +    V
Sbjct: 554 GIPVGKMVNDEIKQILTLEDKLGERVMGQD--YALTQLVQGI--KTSKAKLEDPNKPQGV 609

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            L+VG +GVGKT     L+ ++      ++              +  + +  +   +   
Sbjct: 610 FLLVGPSGVGKTETALTLANELYGGEQHLITIN-----------MSEYQEAHTVSSLKGA 658

Query: 174 IGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH- 231
                         +A  +    V+++D   + H++   +         L+  +      
Sbjct: 659 PPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVIDF 718

Query: 232 -SVLQVLDATTGQNALRQV 249
            +   +L +  G +A+ Q 
Sbjct: 719 KNTTILLTSNAGSSAIMQA 737


>gi|313899944|ref|ZP_07833446.1| phosphoribulokinase/uridine kinase family protein [Clostridium sp.
           HGF2]
 gi|312955252|gb|EFR36918.1| phosphoribulokinase/uridine kinase family protein [Clostridium sp.
           HGF2]
          Length = 588

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHV--ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           + K L  L+          PH   IL+ G +  GKTT   +L+  +   G K M  + D 
Sbjct: 305 VEKKLAELAASI---VQGHPHTKFILIAGPSSAGKTTFSRRLAIHLKILGKKPMPISMDD 361

Query: 150 F 150
           F
Sbjct: 362 F 362


>gi|302805412|ref|XP_002984457.1| hypothetical protein SELMODRAFT_180926 [Selaginella moellendorffii]
 gi|300147845|gb|EFJ14507.1| hypothetical protein SELMODRAFT_180926 [Selaginella moellendorffii]
          Length = 494

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 70/199 (35%), Gaps = 40/199 (20%)

Query: 57  DI-GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           D+ GV  A+    ELL     K + +  +++   +++  +       F    +  P  +L
Sbjct: 199 DVAGVDTAK---AELLEVSLRKKLRLPLMVFLFFQIVSCLRGA--SNFRSLGAKFPKGVL 253

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           ++G  G GKT     L++ ++        A      ++A +           +       
Sbjct: 254 LIGPPGTGKT----LLARALAGEAGVPFFA------ASASEF---------VEMFVGRGA 294

Query: 176 SDAAALAYEAFKQAQAKKVDVLIID-------TAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           +    L   A K A +    V+ ID         GR  N+         + ++L  +D  
Sbjct: 295 ARIRELFTVARKHAPS----VIFIDELDAVGGQRGRGFNDER----DQTLNQLLTEMDGF 346

Query: 229 APHSVLQVLDATTGQNALR 247
              + + VL AT    AL 
Sbjct: 347 ESGTGVLVLAATNRAEALD 365


>gi|288560859|ref|YP_003424345.1| chromosome partitioning ATPase ParA [Methanobrevibacter ruminantium
           M1]
 gi|288543569|gb|ADC47453.1| chromosome partitioning ATPase ParA [Methanobrevibacter ruminantium
           M1]
          Length = 278

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 28/75 (37%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            KM+    K F    + +  + ++ G  GVGK+TV   L++     GL   +   D    
Sbjct: 20  KKMIEQEMKLFEHMKNIKYKIAVMSGKGGVGKSTVAANLAEAFQKKGLLTGILDADIHGP 79

Query: 153 AAIDQLKIWADRTSA 167
                L +  +    
Sbjct: 80  NIPKMLDVEGEDVII 94


>gi|282859273|ref|ZP_06268390.1| phosphoribulokinase/uridine kinase family protein [Prevotella bivia
           JCVIHMP010]
 gi|282587955|gb|EFB93143.1| phosphoribulokinase/uridine kinase family protein [Prevotella bivia
           JCVIHMP010]
          Length = 553

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
               + +  V+L+ G +  GKTT   +LS ++   G+K +  + D +
Sbjct: 281 TIAANDKVRVVLIAGPSSSGKTTFCKRLSVQLLACGIKPIQISLDDY 327


>gi|239931915|ref|ZP_04688868.1| putative ATP-binding component of an ABC transport protein
           [Streptomyces ghanaensis ATCC 14672]
          Length = 711

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           ++ +VG NG GKTT++  L+   +    +++    D   +AA+D
Sbjct: 476 IVALVGENGSGKTTLVKLLAGLYTPERGRILWDDVD---AAAVD 516


>gi|291301677|ref|YP_003512955.1| AAA ATPase [Stackebrandtia nassauensis DSM 44728]
 gi|290570897|gb|ADD43862.1| AAA ATPase [Stackebrandtia nassauensis DSM 44728]
          Length = 364

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 26/109 (23%)

Query: 115 LVVGVNGVGKTTVIGKLSKKM----------------SDAGLKVMLAAGDTFRSAAIDQL 158
           +V G  G GKTT    L+ ++                     +V+    D  + AA    
Sbjct: 74  MVCGGQGSGKTT----LAHQLIRARLGLDNSLLGFPVQPGNRRVLYLGMDRPQQAARAMR 129

Query: 159 KIWAD------RTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           +I  +                  +D           A     D +++D+
Sbjct: 130 RIMGETDRRILDAHLRVWPGPPPADVGKHPNTLVDLATEADADTIVVDS 178


>gi|237740032|ref|ZP_04570513.1| lipid A ABC exporter [Fusobacterium sp. 2_1_31]
 gi|229422049|gb|EEO37096.1| lipid A ABC exporter [Fusobacterium sp. 2_1_31]
          Length = 441

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 16/116 (13%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL-----IHKMLMPLSKP 102
           +L+D L  +D    V +   E + T  + + V     + ++               + K 
Sbjct: 163 DLQDSLPSAD---RVVEIFDENIETDVFGEAVKFDEKIQNIKFENVNYKYDDSNEYVLKN 219

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD-------AGLKVMLAAGDTFR 151
            N D      ++  VG +G GKTT++  L++  +         G+ +       +R
Sbjct: 220 VNLDVKAG-EIVAFVGKSGSGKTTLVNLLARFFNTDEGSVTVNGVNIKNIPLGIYR 274


>gi|229521620|ref|ZP_04411038.1| adenylylsulfate kinase [Vibrio cholerae TM 11079-80]
 gi|229341214|gb|EEO06218.1| adenylylsulfate kinase [Vibrio cholerae TM 11079-80]
          Length = 215

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            RP V+   G++G GK+TV G L  +++  G    L  GD  R  
Sbjct: 37  QRPAVLWFTGLSGAGKSTVAGALENRLAALGYHTYLLDGDNVRHG 81


>gi|226952721|ref|ZP_03823185.1| HrpA-like helicase [Acinetobacter sp. ATCC 27244]
 gi|226836512|gb|EEH68895.1| HrpA-like helicase [Acinetobacter sp. ATCC 27244]
          Length = 1284

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 71/221 (32%), Gaps = 39/221 (17%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFS------------HRPHV 113
           +  L   +  +   ++++    +  + + L  L K   N D               +  V
Sbjct: 19  LNRLRKDKKTETAEIEKLFEQSNHKVKQRLARLPKIKLNQDLPVTQYADRLIEAIQKHQV 78

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS------- 166
           I+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+          
Sbjct: 79  IIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGEKLGESI 137

Query: 167 ---ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSILMAGIGK 217
                F           L  +    A+          D +IID A     N   + G   
Sbjct: 138 GFKIRFNEQGSQDSIVRLMTDGILLAELTNDRFLSKYDTIIIDEAHERSLNIDFIMGY-- 195

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
               LK+L P  P   + V  AT     + +   +   A  
Sbjct: 196 ----LKQLLPKRPDLKVIVTSATL---DVNRFSQYFNDAPI 229


>gi|225166475|ref|ZP_03728121.1| urease accessory protein UreG [Opitutaceae bacterium TAV2]
 gi|224799285|gb|EEG17866.1| urease accessory protein UreG [Opitutaceae bacterium TAV2]
          Length = 232

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 66/183 (36%), Gaps = 29/183 (15%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLK 159
            RP  I V G  G GKT +  KL ++M +    + +   D +         R AA+   +
Sbjct: 11  RRPPRIGVGGPVGSGKTMLCLKLCQRMRER-YSMAVVTNDIYTLEDAQFLQRQAALPAER 69

Query: 160 IWA-DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           I   +            +     A  AF+Q +   + ++++++ G       L A     
Sbjct: 70  IAGVETGGCPHTAIRDDTTMNEQAIRAFEQ-KFPDLQLVLVESGG-----DNLSATFS-- 121

Query: 219 IRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI 278
                   P    + + V+D   G    R  +   A+  +  LI+ K+D     G  + +
Sbjct: 122 --------PELVDAFIYVIDVAEGDKIPR--KGGPAIRHSDLLIINKIDLAPLVGADLDV 171

Query: 279 VVT 281
           +  
Sbjct: 172 MAR 174


>gi|196003998|ref|XP_002111866.1| hypothetical protein TRIADDRAFT_37504 [Trichoplax adhaerens]
 gi|190585765|gb|EDV25833.1| hypothetical protein TRIADDRAFT_37504 [Trichoplax adhaerens]
          Length = 461

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 111 PHVILVVGVNGVGKTTVIG-KLSKKMSDAGLKVMLAAGDTFR 151
           P VI++VG+   GK T I  KL+  ++  G K  +     +R
Sbjct: 34  PTVIVMVGLPARGK-TFIARKLTHYLNWIGYKTKVFNLGEYR 74


>gi|145550325|ref|XP_001460841.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428672|emb|CAK93444.1| unnamed protein product [Paramecium tetraurelia]
          Length = 668

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 21/171 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            DV       +  E I + L    K +    +  P  IL+VG  G GKT     L++ ++
Sbjct: 238 NDVLGIDEFKEELEEIVEFLK-HPKKYTDSGAKLPKGILLVGPPGTGKT----LLARALA 292

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                       +      D++ +    +    +       A ++ +          +D 
Sbjct: 293 GEAGCAFFYKSGS----EFDEMFVGVGASRVREIFKTARQKAPSIIF----------IDE 338

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             ID+ G              + ++L  +D       + V+ AT  +  L 
Sbjct: 339 --IDSIGGRRRAQDPGYSRDTINQILTEMDGFKQSESVIVIGATNFEQVLD 387


>gi|90416117|ref|ZP_01224050.1| ATP-dependent helicase HrpA [marine gamma proteobacterium HTCC2207]
 gi|90332491|gb|EAS47688.1| ATP-dependent helicase HrpA [marine gamma proteobacterium HTCC2207]
          Length = 1309

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 18/167 (10%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI-------DQLKIWA 162
           +  VI+V G  G GKTT I K+  + +  G++ ++      R AA        ++LK+  
Sbjct: 100 KHQVIVVAGETGSGKTTQIPKICLQ-AGRGVRGLIGHTQPRRIAARTVATRIAEELKVNI 158

Query: 163 DRT---SADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTA-GRLHNNSILM 212
                    F      +    L  +    A+ ++       D +IID A  R  N   L+
Sbjct: 159 GEAVGYQVRFSDQSAPNSLIKLMTDGILLAEIQRDRFLSAYDTIIIDEAHERSLNIDFLL 218

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
             +  ++     L      + + V   +   N    VE+        
Sbjct: 219 GYLKNLLPQRPDLKIIITSATIDVDKFSKHFNDAPVVEVSGRSFPVD 265


>gi|118430708|ref|YP_873922.1| non-structural polyprotein [Rabbit vesivirus]
 gi|66794787|emb|CAI29268.1| non-structural polyprotein [Rabbit vesivirus]
          Length = 1880

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 20/132 (15%)

Query: 29  KEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA---QKIVEELLTKRYAKDVSVQRVL 85
            E + + +SSR +      EL +  I +DI        Q++ E L  +  +  ++     
Sbjct: 497 NERLVNDLSSRTI---ALTELNNPTITADI--DAVINLQRLAEILRDEVKSHTLNPLMQP 551

Query: 86  YDVSELIHKMLMPLS---------KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           Y    ++  ++  L          K      +    VIL  G  G GKTT    L+K++S
Sbjct: 552 YTP--ILRNLMSALDNVISCCTRRKAIATKRTAPVAVIL-TGPPGCGKTTAAFALAKRLS 608

Query: 137 DAGLKVMLAAGD 148
                ++    D
Sbjct: 609 QQKPSIISLDVD 620


>gi|57640886|ref|YP_183364.1| GTPase [Thermococcus kodakarensis KOD1]
 gi|57159210|dbj|BAD85140.1| XPA-binding protein 1 homolog [Thermococcus kodakarensis KOD1]
          Length = 247

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 72/236 (30%), Gaps = 53/236 (22%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAID------------QLK 159
           ++  +G  G GKTT+ G+  K +S+ G +V     DT  R                  L 
Sbjct: 2   ILAFIGTAGSGKTTLTGEFGKYLSENGYRVAYVNLDTGVRKLPYTPDLDVREKVTAWSLM 61

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
                 +   V S          Y    +   K+ D ++IDT G     + L    G  +
Sbjct: 62  DEGLGPNGAIVKSYDILAEYTGEYAEKIRELDKESDYVLIDTPG--QMETFLFHEFGVEL 119

Query: 220 R--------------VLKRLDPHAPHSVLQ-----------VLDATTGQNALRQVEMFHA 254
                           + R       +V              + A    + +  +E    
Sbjct: 120 MEAFPDALGVYLFSPEVLRKPSDFCFAVFFGLMIDLRLGITTVPALNKVDTVEDIEGIRK 179

Query: 255 VAGTTGLIMT--KMDGTARGGGLIPIVVTHKIP-------VYFLG--VGEGINDLE 299
                  +    K++ + +G  L+   +   +P       V +L    GEG  DLE
Sbjct: 180 YLDDIEYLTARLKLEPSTQG--LLAYKLCSSLPELAPPTRVLYLSAKTGEGFEDLE 233


>gi|116617687|ref|YP_818058.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116096534|gb|ABJ61685.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 684

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 18/169 (10%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           +  + + +ED   ++DI V     + E    +    D ++ + +    E + K+   + +
Sbjct: 351 EQDILKIVED---KTDIPVGA---LKENEANQLKDLDKNLSKHVIGQDEAVEKLAKAIRR 404

Query: 102 P-FNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
                  S RP    L VG  GVGKT    +L+K     G K  +   D          +
Sbjct: 405 NRIGLTKSGRPIGSFLFVGPTGVGKTETAKQLAK--EMFGSKDAMIRFDMS--------E 454

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                T +  + +  G      A +  +Q + +   +++ D   + H +
Sbjct: 455 YMEKHTVSKMIGAPAGYVGYEEAGQLTEQVRRRPYSLVLFDEVEKAHPD 503


>gi|323497767|ref|ZP_08102781.1| hypothetical protein VISI1226_17856 [Vibrio sinaloensis DSM 21326]
 gi|323317114|gb|EGA70111.1| hypothetical protein VISI1226_17856 [Vibrio sinaloensis DSM 21326]
          Length = 655

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 159 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 212

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 213 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 256

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 257 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 305


>gi|312111885|ref|YP_003990201.1| ATPase AAA [Geobacillus sp. Y4.1MC1]
 gi|311216986|gb|ADP75590.1| ATPase AAA-2 domain protein [Geobacillus sp. Y4.1MC1]
          Length = 720

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 87/228 (38%), Gaps = 41/228 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG-- 59
           +++K   E L+ I K       T    +E     ++++  D+ ++  LE  L ++ +   
Sbjct: 336 TDEKQIQERLAQIAK-----EKTKAVNEENFE--LAAKLRDEELK--LEKQL-QNGVNQE 385

Query: 60  ---VAVA--QKIVEEL------------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
              V VA  Q+I+EE               K    + ++ + +    E + K+   + + 
Sbjct: 386 RPVVDVADIQRIIEEKTGIPVGKLQADEKEKMKHLEENLAKKVIGQEEAVKKVAKAIRRS 445

Query: 103 -FNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                  HRP    L VG  GVGKT +   L++++   G K  +   D          + 
Sbjct: 446 RAGLKAKHRPVGSFLFVGPTGVGKTELAKTLAEEL--FGSKDAMIRLDMS--------EY 495

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
               + +  + S  G      A +  ++ +     ++++D   + H +
Sbjct: 496 MEKHSVSKLIGSPPGYVGFEEAGQLTEKVRRNPYSIILLDEIEKAHPD 543


>gi|302349009|ref|YP_003816647.1| Cell division control protein 48, AAA family [Acidilobus
           saccharovorans 345-15]
 gi|302329421|gb|ADL19616.1| Cell division control protein 48, AAA family [Acidilobus
           saccharovorans 345-15]
          Length = 736

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 11/113 (9%)

Query: 25  SLKLKEGITDIISSRRLDDGVREEL---EDLLIRSDIGVAVAQ-KIVEELLTKRYAKDVS 80
              +  G  D+     +   + E L       + +   + V +  ++ E+  +       
Sbjct: 413 REFMSSGKVDLSKPGEIKKEILETLKVSRRHFLEA---MKVVRPTLIREVFVEVPEVHWD 469

Query: 81  VQRVLYDVSELIHKMLM-PLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGK 130
               L +V + + +++  PL  P  F       P  +L+ G  G GK T++ K
Sbjct: 470 DIGGLDNVKQELREVVEWPLKHPDVFQKMGIEPPKGVLLFGPPGTGK-TMLAK 521


>gi|296201347|ref|XP_002806849.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 2, axonemal-like
            [Callithrix jacchus]
          Length = 4221

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 24/119 (20%)

Query: 30   EGITDIIS----SRRLDDGVREELEDLLIRS--DIG--------VAVAQKIVEELLTKRY 75
              +T ++      RRL   + +E  ++L+ S  D+         V +   IV++L     
Sbjct: 2423 RALTSLLRYAGKKRRLQPDLTDE--EVLLLSMRDMNIAKLTSVDVPLFNAIVQDLFPNTE 2480

Query: 76   AKDVSVQRVLYDVSELIHKMLMPLSKPFN-------WDFSHRPHVILVVGVNGVGKTTV 127
               +   ++   V + I  M +  S PF        ++  +  H  ++VG  G GKTT 
Sbjct: 2481 LPVIDYGKLRETVEQEIRDMGLQ-STPFTLTKVFQLYETKNSRHSTMIVGCTGSGKTTS 2538


>gi|229829531|ref|ZP_04455600.1| hypothetical protein GCWU000342_01627 [Shuttleworthia satelles DSM
           14600]
 gi|229791520|gb|EEP27634.1| hypothetical protein GCWU000342_01627 [Shuttleworthia satelles DSM
           14600]
          Length = 173

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           S +P  I+++G +G GK+T+  KL+ K    
Sbjct: 2   SKKPRKIVIMGYSGSGKSTLATKLADKYQIE 32


>gi|196234133|ref|ZP_03132966.1| ABC transporter-related protein [Chthoniobacter flavus Ellin428]
 gi|196221784|gb|EDY16321.1| ABC transporter-related protein [Chthoniobacter flavus Ellin428]
          Length = 305

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 9/84 (10%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V   +G NG GKTT I  L   +          +  T R   +D   +     +     S
Sbjct: 32  VYAFLGTNGAGKTTTIKTLLNLLQP--------SAGTARIFGVDSTHLGPPELARIGYVS 83

Query: 173 EIGSDAAAL-AYEAFKQAQAKKVD 195
           E       L   +     +A   +
Sbjct: 84  ENQQLPEKLNVQQMIDYCRALYAN 107


>gi|182625619|ref|ZP_02953389.1| ABC transporter, ATP-binding protein [Clostridium perfringens D
           str. JGS1721]
 gi|177909171|gb|EDT71642.1| ABC transporter, ATP-binding protein [Clostridium perfringens D
           str. JGS1721]
          Length = 596

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSD 137
           VVG+NG GKTT I  L++    
Sbjct: 381 VVGLNGAGKTTFIKLLARLYEP 402


>gi|168216292|ref|ZP_02641917.1| ABC transporter, ATP-binding protein [Clostridium perfringens NCTC
           8239]
 gi|182381806|gb|EDT79285.1| ABC transporter, ATP-binding protein [Clostridium perfringens NCTC
           8239]
          Length = 596

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSD 137
           VVG+NG GKTT I  L++    
Sbjct: 381 VVGLNGAGKTTFIKLLARLYEP 402


>gi|168212529|ref|ZP_02638154.1| ABC transporter, ATP-binding protein [Clostridium perfringens CPE
           str. F4969]
 gi|170716099|gb|EDT28281.1| ABC transporter, ATP-binding protein [Clostridium perfringens CPE
           str. F4969]
          Length = 596

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 116 VVGVNGVGKTTVIGKLSKKM 135
           VVG+NG GKTT I  L++  
Sbjct: 381 VVGLNGAGKTTFIKLLARLY 400


>gi|110802109|ref|YP_698143.1| antibiotic ABC transporter ATP-binding protein [Clostridium
           perfringens SM101]
 gi|110682610|gb|ABG85980.1| antibiotic ABC transporter, ATP-binding protein [Clostridium
           perfringens SM101]
          Length = 596

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 116 VVGVNGVGKTTVIGKLSKKM 135
           VVG+NG GKTT I  L++  
Sbjct: 381 VVGLNGAGKTTFIKLLARLY 400


>gi|11499275|ref|NP_070513.1| CODH nickel-insertion accessory protein (cooC-2) [Archaeoglobus
           fulgidus DSM 4304]
 gi|2648870|gb|AAB89564.1| CODH nickel-insertion accessory protein (cooC-2) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 248

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I + G  GVGKTT+   L+   +  G +V     D
Sbjct: 3   IAISGKGGVGKTTLAATLAYLFARDGYRVTAIDCD 37


>gi|51891749|ref|YP_074440.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51855438|dbj|BAD39596.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 672

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 1/102 (0%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG-KLSKKMSDAGLKVMLAAGDTFR 151
            ++L  L+       +H    ++VV   G GKTTVI  ++   ++  G+        TF 
Sbjct: 55  RRLLEGLTPEQARAVTHAAGPLMVVAGPGSGKTTVIARRIGYLIAVRGVDPRSLLVITFT 114

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
            AA D+LK  A  T+              LAY   + AQ   
Sbjct: 115 KAAADELKARAAGTAGPAAARAFFGTFHGLAYRMLRHAQGGG 156


>gi|321478528|gb|EFX89485.1| hypothetical protein DAPPUDRAFT_310603 [Daphnia pulex]
          Length = 427

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           L  + K  + D + R  + ++VG   VGK+TV   L       G + +    D 
Sbjct: 101 LEQIRKKADADETKRGPIAMIVGPTDVGKSTVCKLLLNYAVRMGRRPIYVDLDV 154


>gi|322381261|ref|ZP_08055264.1| molybdopterin-guanine dinucleotide biosynthesis protein B-like
           protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154837|gb|EFX47108.1| molybdopterin-guanine dinucleotide biosynthesis protein B-like
           protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 188

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             +  P V  VVG    GKTT++ KL   +   G +V     D
Sbjct: 13  KTASNPRVFQVVGYKNAGKTTLVCKLVHVLKTGGFRVGTVKHD 55


>gi|319653654|ref|ZP_08007752.1| hypothetical protein HMPREF1013_04369 [Bacillus sp. 2_A_57_CT2]
 gi|317394627|gb|EFV75367.1| hypothetical protein HMPREF1013_04369 [Bacillus sp. 2_A_57_CT2]
          Length = 175

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 111 PHVILVVGVNGVGKTTVIGKL 131
           P V+++ GV G GKTT   KL
Sbjct: 19  PLVVMMCGVAGSGKTTFSKKL 39


>gi|299770909|ref|YP_003732935.1| ATP-dependent helicase HrpA [Acinetobacter sp. DR1]
 gi|298700997|gb|ADI91562.1| ATP-dependent helicase HrpA [Acinetobacter sp. DR1]
          Length = 1285

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 75/227 (33%), Gaps = 45/227 (19%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF 107
           E+E L  +S     V Q+  E L   +  +++ V +    + + I               
Sbjct: 32  EIEKLFEQS--NAKVRQRF-ERLPKIKLNQELPVSQYADRLIDAI--------------- 73

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS- 166
             +  VI+V G  G GKTT + +++  ++  GL  M+      R AA    +  A+    
Sbjct: 74  -QKHQVIIVAGETGSGKTTQLPQIA-MLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGE 131

Query: 167 ---------ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSIL 211
                      F           L  +    A+          D +IID A     N   
Sbjct: 132 KLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYDTIIIDEAHERSLNIDF 191

Query: 212 MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
           + G       LK+L P  P   + V  AT     + +   +   A  
Sbjct: 192 IMGY------LKQLLPKRPDLKVIVTSATL---DVNRFSNYFNDAPV 229


>gi|297243700|ref|ZP_06927631.1| ATP-dependent HrpA-like helicase [Gardnerella vaginalis AMD]
 gi|296888451|gb|EFH27192.1| ATP-dependent HrpA-like helicase [Gardnerella vaginalis AMD]
          Length = 1361

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
            +      V++V G  G GKTT I K++ ++   G    +      R AA    +  A  
Sbjct: 19  IEAIKSSQVVIVSGQTGSGKTTQIPKMALELGRGGRGKQIVHTQPRRLAARTVAERIASE 78

Query: 165 TSA 167
              
Sbjct: 79  MEV 81


>gi|297545179|ref|YP_003677481.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842954|gb|ADH61470.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 510

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 21/173 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           KDV+    + D  ++I   +    K +N   +  P  IL  G  G GKT     L+  ++
Sbjct: 84  KDVAGLDEVIDELKVIIDFMTNTEK-YNKMGAKIPKGILFYGPPGTGKT----LLATALA 138

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                  ++A  +                   +V        A  A           +D 
Sbjct: 139 GETNSTFISASGS--------------EFVEKYVGVGASRIRALFAKAKKSTPSIIFIDE 184

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             ID  G   N+         + ++L  +D    +  + V+ AT   + L + 
Sbjct: 185 --IDAVGTKRNSDNNSEKDQTLNQLLVEMDGFNSNEGIIVIGATNRIDMLDEA 235


>gi|289578969|ref|YP_003477596.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus
           Ab9]
 gi|289528682|gb|ADD03034.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter italicus
           Ab9]
          Length = 510

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 21/173 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           KDV+    + D  ++I   +    K +N   +  P  IL  G  G GKT     L+  ++
Sbjct: 84  KDVAGLDEVIDELKVIIDFMTNTEK-YNKMGAKIPKGILFYGPPGTGKT----LLATALA 138

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                  ++A  +                   +V        A  A           +D 
Sbjct: 139 GETNSTFISASGS--------------EFVEKYVGVGASRIRALFAKAKKSTPSIIFIDE 184

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             ID  G   N+         + ++L  +D    +  + V+ AT   + L + 
Sbjct: 185 --IDAVGTKRNSDNNSEKDQTLNQLLVEMDGFNSNEGIIVIGATNRIDMLDEA 235


>gi|254508226|ref|ZP_05120350.1| ATP-dependent metallopeptidase HflB subfamily protein [Vibrio
           parahaemolyticus 16]
 gi|219548843|gb|EED25844.1| ATP-dependent metallopeptidase HflB subfamily protein [Vibrio
           parahaemolyticus 16]
          Length = 655

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 159 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 212

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 213 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 256

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 257 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 305


>gi|218194514|gb|EEC76941.1| hypothetical protein OsI_15211 [Oryza sativa Indica Group]
          Length = 461

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 22/164 (13%)

Query: 86  YDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
             + EL+  +++P+     F     H P  +L+ G  G GKT V    +   +       
Sbjct: 225 KQIEELVEAVVLPIIHKNCFQRLGIHPPKGVLLYGPPGTGKTLV----AHAFASQTNATF 280

Query: 144 LAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
                         LK+   + +   +         A      K      +D   ID  G
Sbjct: 281 --------------LKLTGPQLAVKLIGEGARLVRDAFQLAKEKAPCIIFIDE--IDAIG 324

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             H +S        ++ +L +LD    +  ++V+ AT     L 
Sbjct: 325 SNHFDSGDREVQQTIVELLNQLDGVGSYESIKVIAATNRPEVLD 368


>gi|197249294|ref|YP_002146960.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197212997|gb|ACH50394.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 586

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 9/129 (6%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  LS   +   S    +I+++G  GVGKTT+   ++ +++  G  V L+  D    AA 
Sbjct: 311 LPSLSSLIDGFASQGHGLIMLMGKGGVGKTTLAAAIAVELARRGYPVHLSTSD---PAAH 367

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
               +            +  ++      +   +          +D  GR      L +  
Sbjct: 368 LTDTLDGSFDGLSVSRIDPQAETERYRQQVMAEQGKN------LDEQGRAVLEEDLRSPC 421

Query: 216 GKMIRVLKR 224
            + I V + 
Sbjct: 422 TEEIAVFQA 430


>gi|221067282|ref|ZP_03543387.1| ABC transporter related [Comamonas testosteroni KF-1]
 gi|220712305|gb|EED67673.1| ABC transporter related [Comamonas testosteroni KF-1]
          Length = 255

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 57/196 (29%), Gaps = 21/196 (10%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
             L +V +L  +    L    N  F+ RP  V  ++G NG GKTTV   +S     +G  
Sbjct: 3   EYLLEVKDLCMRF-GGLLAVDNVGFNVRPQEVFAIIGPNGAGKTTVFNCISGFYQPSGGS 61

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                 D    A   Q                +    +  A E    AQ ++        
Sbjct: 62  ---VVLDGQSIAG--QSSHHVANHGVVRTFQNVRLFKSMTALENLLVAQHRQS------- 109

Query: 202 AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
             R      L    G      +++D       +  L     + A                
Sbjct: 110 --RASLLGGLFNTPGYRRAEQEKIDNALQWLDVMGLRQFANREAGNLAYGHQRRLEIARC 167

Query: 262 IMTK-----MDGTARG 272
           ++TK     +D  A G
Sbjct: 168 MITKPRVLMLDEPAAG 183


>gi|113460345|ref|YP_718406.1| ATP-dependent Clp protease subunit B [Haemophilus somnus 129PT]
 gi|112822388|gb|ABI24477.1| ATP-dependent Clp protease, subunit B [Haemophilus somnus 129PT]
          Length = 856

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 77/206 (37%), Gaps = 19/206 (9%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K++      I +L K  A       + +T ++ +R  D+ + E L         G+ VA 
Sbjct: 497 KMSELQYGRIPELEKQLAQAESAEGKEMT-LLRNRVTDEEIAEVLSRA-----TGIPVA- 549

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNGV 122
           K++E    K    +  + + +   SE +  +   + +        +RP    L +G  GV
Sbjct: 550 KMMEGEKDKLLRMEQELHKRVVGQSEAVVAVANAIRRSRAGLSDPNRPIGSFLFLGPTGV 609

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKT +   L+        +  +   D       + ++  +           +G +     
Sbjct: 610 GKTELCKTLANF--MFDDENAMVRIDMS-----EFMEKHSVSRLVGAPPGYVGYEEGGYL 662

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNN 208
            EA ++   +   V+++D   + H++
Sbjct: 663 TEAVRR---RPYSVILLDEVEKAHSD 685


>gi|15890851|ref|NP_356523.1| ABC transporter, nucleotide binding/ATPase protein (branched chain
           amino acid) [Agrobacterium tumefaciens str. C58]
 gi|15159144|gb|AAK89308.1| ABC transporter, nucleotide binding/ATPase protein (branched chain
           amino acid) [Agrobacterium tumefaciens str. C58]
          Length = 268

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           V  ++G NG GKTTV   L+K +   G  +     D
Sbjct: 51  VHALIGPNGAGKTTVFNLLTKFLQPTGGAITFMGTD 86


>gi|55275344|ref|YP_133866.1| putative partition protein A [uncultured bacterium]
 gi|54969650|emb|CAG27819.1| putative partition protein A [uncultured bacterium]
          Length = 210

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 17/154 (11%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  ++  G K +L  GD     A         R +  +  S   +  A 
Sbjct: 12  GVGKTTTAVHLATMLARQG-KTLLIDGD---PQASAASWAAWRRENEGYTPSPTTTCLAG 67

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A  A  +  A     +++D  GR      +++L+A    +      LD  A   +L V 
Sbjct: 68  KAILAEGKQLASGFSHVVVDAGGRDSVGLRSALLLAQRAVIPIGASNLDAAAMTDLLTV- 126

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
                   +     ++       +++T++D   +
Sbjct: 127 --------VELARDYNPDLDV-RVLLTRVDPRTK 151


>gi|301061916|ref|ZP_07202646.1| LAO/AO transport system ATPase [delta proteobacterium NaphS2]
 gi|300444020|gb|EFK08055.1| LAO/AO transport system ATPase [delta proteobacterium NaphS2]
          Length = 324

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 15/155 (9%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + +VE++ +        + R + D    + + L  L     + ++   +VI + G  GVG
Sbjct: 2   KDLVEKVTSGDVRTVARLIRDVDDGMPEVREALKEL-----YPYTGNAYVIGITGAPGVG 56

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSEIGS 176
           K+T++ ++   +   G  V + A D    F   AI      ++  +  +           
Sbjct: 57  KSTLVDQMVAHLRKRGKTVGVLAVDPTSPFSGGAILGDRVRMQRHSMDSGVFIRSLATRG 116

Query: 177 DAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNN 208
               L      A     A   DV++++T G   + 
Sbjct: 117 HFGGLTQSTRSAIDILDAMGKDVILVETVGVGQDE 151


>gi|262278659|ref|ZP_06056444.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259010|gb|EEY77743.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 896

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 70/199 (35%), Gaps = 23/199 (11%)

Query: 59  GVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           G+ V + + +E+        +  + V  Q   Y +++L+  +    SK    D +    V
Sbjct: 557 GIPVGKMVNDEIKQILTLEDKLGERVMGQD--YALTQLVQGI--KTSKARLEDPNKPQGV 612

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            L+VG +GVGKT     L+ ++      ++              +  + +  +   +   
Sbjct: 613 FLLVGPSGVGKTETALTLANELYGGEQHLITIN-----------MSEYQEAHTVSSLKGA 661

Query: 174 IGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH- 231
                         +A  +    V+++D   + H++   +         L+  +      
Sbjct: 662 PPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVIDF 721

Query: 232 -SVLQVLDATTGQNALRQV 249
            +   +L +  G +A+ Q 
Sbjct: 722 KNTTILLTSNAGSSAIMQA 740


>gi|260912679|ref|ZP_05919165.1| ATP-dependent chaperone ClpB [Pasteurella dagmatis ATCC 43325]
 gi|260633057|gb|EEX51222.1| ATP-dependent chaperone ClpB [Pasteurella dagmatis ATCC 43325]
          Length = 855

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 14/164 (8%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNW 105
           EE+ ++L R+  G+ VA K++E    K    +  + + +    E I  +   + +     
Sbjct: 533 EEIAEVLSRA-TGIPVA-KMMEGEKEKLLRMEDELHKRVIGQHEAIEAVANAIRRSRAGL 590

Query: 106 DFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              +RP    L +G  GVGKT +   L+  +     +  +   D       + ++  +  
Sbjct: 591 SDPNRPIGSFLFLGPTGVGKTELCKTLANFL--FDDENAMVRIDMS-----EFMEKHSVS 643

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                    +G +      EA ++   +   V+++D   + H++
Sbjct: 644 RLVGAPPGYVGYEEGGYLTEAVRR---RPYSVILLDEVEKAHHD 684


>gi|258625778|ref|ZP_05720657.1| adenylylsulfate kinase [Vibrio mimicus VM603]
 gi|258582016|gb|EEW06886.1| adenylylsulfate kinase [Vibrio mimicus VM603]
          Length = 220

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             RP V+   G++G GK+TV G L  ++++ G    L  GD  R  
Sbjct: 41  EQRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVRHG 86


>gi|237666025|ref|ZP_04526013.1| ABC transporter, ATP-binding/permease protein [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|237658972|gb|EEP56524.1| ABC transporter, ATP-binding/permease protein [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 573

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 12/163 (7%)

Query: 104 NWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKM-------SDAGLKVMLAAGDTFR--SA 153
           ++ F  +P   I +VG  G GKTT++  L +               V     D+ R    
Sbjct: 355 DFSFEAKPGETIAIVGPTGCGKTTLVNLLMRFYDIDKGAIYIDNNNVCDITRDSLRKNFG 414

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMA 213
            + Q     + T +D +       +     +A K+A A      + D    + N   L A
Sbjct: 415 MVLQDPWLFNSTISDNISYGNSDASKEDIIKAAKKAHAHSFIKRLKDGYDTVINEENLSA 474

Query: 214 GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
           G  +++ + + +       +L + +AT+  + L ++ +  A  
Sbjct: 475 GQRQLLTIARVMLAEP--RILILDEATSSIDTLTEMRIQKAFL 515


>gi|256828225|ref|YP_003156953.1| type II secretion system protein E [Desulfomicrobium baculatum DSM
           4028]
 gi|256577401|gb|ACU88537.1| type II secretion system protein E [Desulfomicrobium baculatum DSM
           4028]
          Length = 702

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 96  LMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVI 128
           L+P +K       ++P+  ILVVG  G GKTT +
Sbjct: 430 LLPQNKAAFEKLIYKPYGLILVVGPTGSGKTTTL 463


>gi|167646052|ref|YP_001683715.1| general secretory pathway protein E [Caulobacter sp. K31]
 gi|167348482|gb|ABZ71217.1| general secretory pathway protein E [Caulobacter sp. K31]
          Length = 559

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 102 PFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT--FRSAAIDQL 158
           P   D   RPH I++V G  G GKTT +   +    ++  + +L   D   +R A ++Q 
Sbjct: 298 PSFQDVLARPHGIVLVTGPTGSGKTTTLY-AALASLNSPTRKILTIEDPIEYRLAGVNQT 356

Query: 159 KIWAD 163
           ++   
Sbjct: 357 QVSPQ 361


>gi|34540005|ref|NP_904484.1| SpoOJ regulator protein [Porphyromonas gingivalis W83]
 gi|34396316|gb|AAQ65383.1| SpoOJ regulator protein [Porphyromonas gingivalis W83]
          Length = 258

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 7/138 (5%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  ++    KV++   D  ++ A   L +             + +   A
Sbjct: 13  GVGKTTTTINLAASLATLEKKVLVVDADP-QANASSGLGVDIASLQNTVYECLVCNLPVA 71

Query: 181 LAYEAFKQAQAKKVDVL--IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
              EA +    + +D++   ID  G       L      M+R+L R        VL    
Sbjct: 72  ---EAVQPTPVEGLDIIPSHIDLVGAEIEMLNLPEREKVMLRLL-RGIADRYDYVLIDCS 127

Query: 239 ATTGQNALRQVEMFHAVA 256
            + G   +  +   H+V 
Sbjct: 128 PSLGLITVNALVAAHSVI 145


>gi|116207114|ref|XP_001229366.1| hypothetical protein CHGG_02850 [Chaetomium globosum CBS 148.51]
 gi|88183447|gb|EAQ90915.1| hypothetical protein CHGG_02850 [Chaetomium globosum CBS 148.51]
          Length = 254

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 54/178 (30%), Gaps = 24/178 (13%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD----TFRSAAIDQLKIWADRTSA 167
           + ++V+G  GVGK+T  G L   +            D     F+ A    +K        
Sbjct: 4   YGVMVMGPAGVGKSTFCGSLITHLQLNRRSTFYINLDPAAEHFQHAPDLDIKDLITVDDV 63

Query: 168 D-----------FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI------ 210
                         C E          +A +    +   ++IID  G++   +       
Sbjct: 64  MEELQLGPNGGLIYCFEYLLQNLDFISDALESLTEEY--LIIIDMPGQIELYTHVPLLPP 121

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG-LIMTKMD 267
           L+  + +   +  RL          VLD                + G     I++KMD
Sbjct: 122 LVKFLTQPGALDIRLCAAYLLESTFVLDKAKYFAGTLSAMSAMMMLGVPHLNILSKMD 179


>gi|119775409|ref|YP_928149.1| ParA family protein [Shewanella amazonensis SB2B]
 gi|119767909|gb|ABM00480.1| ParA family protein [Shewanella amazonensis SB2B]
          Length = 263

 Score = 37.1 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           GVGKTT +  L+  ++  G +V++   D
Sbjct: 12  GVGKTTTVASLAGLLAKQGKRVLMVDTD 39


>gi|332307114|ref|YP_004434965.1| ATP-dependent metalloprotease FtsH [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174443|gb|AEE23697.1| ATP-dependent metalloprotease FtsH [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 656

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 53/169 (31%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DVSEL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 164 DEAKEDVSELVDFLRDP--SKFQKLGGRIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 217

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
              +   +                  +       S    +  +A K A      +  ID 
Sbjct: 218 PFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 261

Query: 202 AGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 262 VGRQRGAGMGGGHDEREQTLNQMLVEMDGFGGNEGIIVIAATNRPDVLD 310


>gi|330892308|gb|EGH24969.1| general secretory pathway protein E [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330962487|gb|EGH62747.1| general secretory pathway protein E [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 565

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---FRSAAIDQLKI 160
            +  +RPH IL+V G  G GKTT +   +        +  +   +    ++   I+QL++
Sbjct: 305 IEILNRPHGILLVTGPTGSGKTTTL--YAALSRLNTAERKIITVEDPVEYQLEGINQLQV 362


>gi|313207215|ref|YP_004046392.1| type i site-specific deoxyribonuclease [Riemerella anatipestifer
           DSM 15868]
 gi|312446531|gb|ADQ82886.1| Type I site-specific deoxyribonuclease [Riemerella anatipestifer
           DSM 15868]
 gi|315022983|gb|EFT36004.1| type III restriction protein res subunit [Riemerella anatipestifer
           RA-YM]
 gi|325335339|gb|ADZ11613.1| Type I site-specific restriction-modification system, R
           (restriction) subunit related helicase [Riemerella
           anatipestifer RA-GD]
          Length = 1147

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 75/256 (29%), Gaps = 35/256 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDV---SELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           Q +++    +   +   + + +       + I ++   L      +   +    L+V   
Sbjct: 340 QTLIKRRKERSDIRQFQINQNIAGRPYQLQAIQRVAETLVGEHRGNLRGKSRKALLVMAT 399

Query: 121 GVGKT-TVIGKLSKKMSDAGLKVMLAAGDTF---------------RSAAID--QLKIWA 162
           G GKT T    +         K +L   D                   +AID  Q K   
Sbjct: 400 GSGKTRTSAAMVDMFTKCNWAKRILFLADRNALVTQAKNAFKEHLPHLSAIDLTQDKDDG 459

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                      + +    +     +Q      DV+IID A R                  
Sbjct: 460 TARVVFSTYPTMMNRIDQITSNGERQFSIGHFDVIIIDEAHRSVYQK------------- 506

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
            +       ++L  L AT  ++  R       +         ++D   + G L+P     
Sbjct: 507 YQAIFDYFDAILIGLTATPKKDIDRNTYQLFEIEDDNPTFAYELDTAVKEGFLVP-PKAL 565

Query: 283 KIPVYFLGVGEGINDL 298
            +PV ++  G    +L
Sbjct: 566 SVPVKYVREGIKYKEL 581


>gi|313201614|ref|YP_004040272.1| ATP-dependent metalloprotease ftsh [Methylovorus sp. MP688]
 gi|312440930|gb|ADQ85036.1| ATP-dependent metalloprotease FtsH [Methylovorus sp. MP688]
          Length = 631

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 54/171 (31%), Gaps = 25/171 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                +VSEL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 160 DEAKEEVSELVEFLRDP--TKFQKLGGRIPRGVLMVGPPGTGKT----LLAKAIAGEAKV 213

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       +    +  +A K A      +  ID 
Sbjct: 214 PFFTISGS---------------DFVEMFVGVGAARVRDMFEQAKKAAPCIIF-IDEIDA 257

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            GR                + ++L  +D   P+S + V+ AT   + L + 
Sbjct: 258 VGRHRGAGTGGGNDEREQTLNQMLVEMDGFEPNSGVIVIAATNRADVLDKA 308


>gi|330906206|ref|XP_003295390.1| hypothetical protein PTT_00729 [Pyrenophora teres f. teres 0-1]
 gi|311333358|gb|EFQ96511.1| hypothetical protein PTT_00729 [Pyrenophora teres f. teres 0-1]
          Length = 2316

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 13/30 (43%)

Query: 111  PHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            P   L  G  G GKTT   K+ K   D G 
Sbjct: 1874 PFNFLFKGPPGTGKTTTAAKMGKIFYDMGF 1903


>gi|307352789|ref|YP_003893840.1| cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM
           11571]
 gi|307156022|gb|ADN35402.1| Cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM
           11571]
          Length = 250

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +++ G  G GK+T+   L++  S+ G KV++   D
Sbjct: 3   VIICGKGGSGKSTITALLARHYSENGHKVLVIDTD 37


>gi|304316100|ref|YP_003851245.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777602|gb|ADL68161.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 506

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 26/185 (14%)

Query: 71  LTKRYAKDVSVQRV----LYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGK 124
             K   K VS+       L +V + +  ++  ++    +D   +  P  IL  G  G GK
Sbjct: 67  KEKESNKKVSITFRDVAGLDEVIDELKIIIDFINNTEKYDRMGAKIPKGILFYGPPGTGK 126

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+  ++       ++A  +                   +V        A  A  
Sbjct: 127 T----LLATALAGETNSTFISASGS--------------EFVEKYVGVGASRIRALFARA 168

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
                    +D   ID  G   NN         + ++L  +D    +  + V+ AT   +
Sbjct: 169 KKSTPSIIFIDE--IDAVGSKRNNDNNSEKDQTLNQLLVEMDGFNSNDGIIVIGATNRLD 226

Query: 245 ALRQV 249
            L + 
Sbjct: 227 MLDEA 231


>gi|302346053|ref|YP_003814406.1| phosphoribulokinase/uridine kinase family protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149920|gb|ADK96182.1| phosphoribulokinase/uridine kinase family protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 555

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 11/121 (9%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
             + ++I   ++ +  +E      I   +G+       E +        ++V   L +  
Sbjct: 220 SKLGELIRQDKMFEVFKEHHRWQSI---LGIKTVGDFNEAVKNGLATDLINVSEALQE-- 274

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
               K +  ++            V+L+ G +  GKTT   +LS ++  +G+K +  + D 
Sbjct: 275 ----KKISQIAD--TIAARKEIKVVLIAGPSSSGKTTFCKRLSVQLLASGVKPVQISLDD 328

Query: 150 F 150
           +
Sbjct: 329 Y 329


>gi|229488664|ref|ZP_04382530.1| adenylate kinase [Rhodococcus erythropolis SK121]
 gi|229324168|gb|EEN89923.1| adenylate kinase [Rhodococcus erythropolis SK121]
          Length = 191

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG-------LKVMLAAGDTF 150
           F    + RP  ILV G +G GKTT+ G++ + +                   D+F
Sbjct: 5   FPAALTIRPQKILVAGTSGAGKTTLAGRIGRLLEIEHTELDSLFHGPDWIPLDSF 59


>gi|225021815|ref|ZP_03711007.1| hypothetical protein CORMATOL_01845 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945511|gb|EEG26720.1| hypothetical protein CORMATOL_01845 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 566

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            +  +VG +G GK+T+   L++    A   + +A  D  R  A D+L             
Sbjct: 353 TITALVGPSGSGKSTLAKLLARFYDVAEGTISIAGVDV-RDIATDELYRTIGM------V 405

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPH 228
            +          E  +  +    D  I+  A R   ++    L  G+  +I V   L   
Sbjct: 406 FQDPQLLNVSIRENIRMCRPDATDDQIMAAARRARIDTDITQLPRGLDSIIGVDTNLSGG 465

Query: 229 APHSVLQ--VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTH 282
               +       A T    L +    +A   +   I   +D  A+   +I I    
Sbjct: 466 QEQRIAIARAFLADTPILILDEATA-YADPDSEAAIKAAIDELAQHRTVIMIAHRL 520


>gi|168207571|ref|ZP_02633576.1| ABC transporter, ATP-binding protein [Clostridium perfringens E
           str. JGS1987]
 gi|170661069|gb|EDT13752.1| ABC transporter, ATP-binding protein [Clostridium perfringens E
           str. JGS1987]
          Length = 596

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 116 VVGVNGVGKTTVIGKLSKKM 135
           VVG+NG GKTT I  L++  
Sbjct: 381 VVGLNGAGKTTFIKLLARLY 400


>gi|149927514|ref|ZP_01915768.1| fused predicted transporter subunit of ABC superfamily: ATP-binding
           component [Limnobacter sp. MED105]
 gi|149823787|gb|EDM83013.1| fused predicted transporter subunit of ABC superfamily: ATP-binding
           component [Limnobacter sp. MED105]
          Length = 553

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 13/103 (12%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMP---LSKPF-------NWDFSHRPHVIL-V 116
           EEL +  Y K    Q +   V+E +   ++    +SK F       N  F   P  I+ V
Sbjct: 294 EELSSHEYQKRNETQEIFIPVAERLGNEVIEFENVSKAFGDRLLIDNLSFKIPPGAIVGV 353

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           +G NG GK+T+   ++    +      +  G T R A +DQ +
Sbjct: 354 IGPNGAGKSTLFKMIAG--KEEPTSGSIKVGSTVRMAVVDQAR 394


>gi|220928809|ref|YP_002505718.1| ABC transporter [Clostridium cellulolyticum H10]
 gi|219999137|gb|ACL75738.1| ABC transporter related [Clostridium cellulolyticum H10]
          Length = 518

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 64  QKIVEELLTK-----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             I+E++  K     ++ +  S  R +     L+      LS P N        V  V G
Sbjct: 299 MDIIEKVREKVKPIFKFREARSPGRYIIQTENLVIGYDSALSSPLNISLERGQKV-AVKG 357

Query: 119 VNGVGKTT 126
           VNG+GK+T
Sbjct: 358 VNGLGKST 365


>gi|18309816|ref|NP_561750.1| ABC transporter [Clostridium perfringens str. 13]
 gi|18144494|dbj|BAB80540.1| probable ABC transporter [Clostridium perfringens str. 13]
          Length = 596

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSD 137
           VVG+NG GKTT I  L++    
Sbjct: 381 VVGLNGAGKTTFIKLLARLYEP 402


>gi|85708547|ref|ZP_01039613.1| ParA-like protein [Erythrobacter sp. NAP1]
 gi|85690081|gb|EAQ30084.1| ParA-like protein [Erythrobacter sp. NAP1]
          Length = 213

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT+   L+ + + A  +  +   D   +AA      W+D    DF+   + +   A
Sbjct: 13  GSGKTTLAVHLATRAAVAKHESCVIDTDPQATAA-----TWSDWRG-DFLPV-VVTAPPA 65

Query: 181 LAYEAFKQAQAKKVDVLIIDT 201
                 + A+   VD ++IDT
Sbjct: 66  RLNRTIESAKKNGVDFIVIDT 86


>gi|77465301|ref|YP_354804.1| ABC branched-chain amino acid transporter, ATPase subunit
           [Rhodobacter sphaeroides 2.4.1]
 gi|126464765|ref|YP_001045878.1| ABC transporter related [Rhodobacter sphaeroides ATCC 17029]
 gi|332560907|ref|ZP_08415225.1| ABC transporter related protein [Rhodobacter sphaeroides WS8N]
 gi|77389719|gb|ABA80903.1| ABC branched-chain amino acid transporter, ATPase subunit
           [Rhodobacter sphaeroides 2.4.1]
 gi|126106576|gb|ABN79106.1| ABC transporter related [Rhodobacter sphaeroides ATCC 17029]
 gi|332274705|gb|EGJ20021.1| ABC transporter related protein [Rhodobacter sphaeroides WS8N]
          Length = 257

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           +  ++G NG GKTTV   L+K +     K+ L   D  R+
Sbjct: 40  IHALIGPNGAGKTTVFNLLTKFLQPTRGKITLLGTDITRT 79


>gi|86149282|ref|ZP_01067513.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88596695|ref|ZP_01099932.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218563195|ref|YP_002344975.1| putative ATP/GTP-binding protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85840064|gb|EAQ57322.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88191536|gb|EAQ95508.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360902|emb|CAL35703.1| putative ATP/GTP-binding protein (Mrp protein homolog)
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926801|gb|ADC29153.1| putative ATP/GTP-binding protein (Mrp protein-like protein)
           [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927648|gb|EFV06979.1| Putative ATP/GTP-binding protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929302|gb|EFV08512.1| putative ATP/GTP-binding protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 368

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 103/320 (32%), Gaps = 56/320 (17%)

Query: 14  IRKLTK----GFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVE 68
           + KL      GF    +       + +   ++ DDGV  ++E +   +     VA +I +
Sbjct: 6   LEKLKTVKYPGFEKDIVSF-----NFVKDIKIQDDGVFIDIEIV--SA--NPEVANEIRK 56

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
               +  +        L  ++  I +         N     +  +++  G  GVGK+T  
Sbjct: 57  N-TIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMVSSGKGGVGKSTTT 115

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+  M+  G +V +   D +               +   +  E  +    +  +  K 
Sbjct: 116 VNLAISMAKMGKRVGILDADIYGP-------------NIPRMLGETKTQP-EVVGQRLKP 161

Query: 189 AQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQV----LDATTGQ 243
                   + + + G L      LM     +++ +++L        L V    +   TG 
Sbjct: 162 ILTHG---VYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD 218

Query: 244 NALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIPIVVTHKIPVY--------FLG- 290
             +   +     AG    + T     +D + R    + +     IP+         FL  
Sbjct: 219 AQITSAQSIPIAAGV--CVSTPQTVSLDDSKR---ALDMFNKLHIPIAGVIENMSGFLCP 273

Query: 291 -VGEGINDLEPFVAKDFSAV 309
             G+  +      A+D +  
Sbjct: 274 DNGKEYDIFGKGTAEDMAKA 293


>gi|325109337|ref|YP_004270405.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Planctomyces
           brasiliensis DSM 5305]
 gi|324969605|gb|ADY60383.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Planctomyces
           brasiliensis DSM 5305]
          Length = 426

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           V   ++IV  L      ++ + + +   V     +++   +   + +       IL++G 
Sbjct: 73  VPTPREIVAHLDEYVIGQERAKRVMSVAVHNHYKRLMNLEADESDVEIEKSN--ILLLGP 130

Query: 120 NGVGKTTVIGKLSKKMS 136
            G GKT +   +++ + 
Sbjct: 131 TGSGKTLLAKTMARLLQ 147


>gi|288555417|ref|YP_003427352.1| AAA-2 domain ATPase [Bacillus pseudofirmus OF4]
 gi|288546577|gb|ADC50460.1| AAA-2 domain ATPase modulates CtsR MecA [Bacillus pseudofirmus OF4]
          Length = 718

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 21/146 (14%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGV 122
           + + ++L  K   ++ +V++V   V                    HRP    L VG  GV
Sbjct: 421 KNLADQLRGKVIGQEKAVEKVAKAVR----------RSRAGLKAKHRPIGSFLFVGPTGV 470

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKT +   L++++   G K  +   D          +     + +  + S  G      A
Sbjct: 471 GKTELTKSLAEQL--FGTKEAMVRLDMS--------EYMEKHSVSKLIGSPPGYVGHDEA 520

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +  ++ +     ++++D   + H +
Sbjct: 521 GQLTEKVRRNPYSIILLDEIEKAHPD 546


>gi|260426040|ref|ZP_05780019.1| LAO/AO transport system ATPase [Citreicella sp. SE45]
 gi|260420532|gb|EEX13783.1| LAO/AO transport system ATPase [Citreicella sp. SE45]
          Length = 329

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 19/136 (13%)

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
                 ELI  +     +      S  P         GVGK+T I      ++  GLKV 
Sbjct: 32  HRAQARELIEGLRGQGREALRVGLSGTP---------GVGKSTFIEAFGMMLTAQGLKVA 82

Query: 144 LAAGD--TFRSAAI-----DQLKIWADRTSADFVCSEIGSDAAALAY---EAFKQAQAKK 193
           + A D  + RS         +++  +    A    S   S    +A    EA    +A  
Sbjct: 83  VLAVDPSSARSGGSILGDKTRMERLSRDPGAFIRPSPSQSHLGGVARRTREAIDLCEAAG 142

Query: 194 VDVLIIDTAGRLHNNS 209
            DV++I+T G   + +
Sbjct: 143 FDVILIETVGVGQSET 158


>gi|322418779|ref|YP_004198002.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
 gi|320125166|gb|ADW12726.1| ATP-dependent metalloprotease FtsH [Geobacter sp. M18]
          Length = 619

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+         + +   L    + F       P  IL+VG  G GKT     L++ ++ 
Sbjct: 176 DVAGMENCKLELKEVVDYLKE-PEQFRQIGGKVPKGILLVGPPGTGKT----LLARAVAG 230

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                          A ++   I A +    FV           A           +D  
Sbjct: 231 E--------------AGVNFFTISASQFIEMFVGVGASRVRDLFANAKKGAPSIIFIDE- 275

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    H  + VL AT   + L 
Sbjct: 276 -IDAVGRSRGTGLGGGHDEREQTLNQLLSEMDGFDRHEEVIVLAATNRPDVLD 327


>gi|253744290|gb|EET00516.1| Hypothetical protein GL50581_2239 [Giardia intestinalis ATCC 50581]
          Length = 360

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKPFNWDFSHRPHVILVV 117
           G  + +K  + L      + + +     +    + K+L            S  P VI+V 
Sbjct: 12  GSELVKK--DSLFWTATEQFLELIDCEANTEPAVMKLLSRAGFADIAPPASVDPRVIVVD 69

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           G  G GK+T   KL++   +  L+V +  
Sbjct: 70  GPIGAGKSTFCRKLAEYAREQALQVAVVE 98


>gi|213965634|ref|ZP_03393828.1| LAO/AO transport system ATPase [Corynebacterium amycolatum SK46]
 gi|213951793|gb|EEB63181.1| LAO/AO transport system ATPase [Corynebacterium amycolatum SK46]
          Length = 370

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 19/141 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +         EL+ K+L          FS +   + + GV GVGK+T I  L  K+ +
Sbjct: 63  ESTAPAHKVLAQELLVKLL---------PFSGKAMRVGLTGVPGVGKSTTIETLGLKLIE 113

Query: 138 AGLKVMLAAGD---TFRSAAIDQLKIWADRTSA-------DFVCSEIGSDAAALAYEAFK 187
            G +V + A D   T    +I   K    R SA           +      A    EA  
Sbjct: 114 EGHRVAVLAIDPSSTKSGGSILGDKTRMSRLSAADEAFIRPSPSAGTLGGVAKATREAMV 173

Query: 188 QAQAKKVDVLIIDTAGRLHNN 208
             +A   D++I++T G   + 
Sbjct: 174 VLEAAGYDIVIVETVGVGQSE 194


>gi|254382353|ref|ZP_04997713.1| lysine arginine ornithine transport system kinase [Streptomyces sp.
           Mg1]
 gi|194341258|gb|EDX22224.1| lysine arginine ornithine transport system kinase [Streptomyces sp.
           Mg1]
          Length = 317

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 70/215 (32%), Gaps = 32/215 (14%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +V +    R      +  ++   S  + +++  L+       +   +V+ + G  GVGK+
Sbjct: 6   LVAQAREGRPRAVARLISLVEGASPQLREVMAALA-----PLTGGAYVVGLTGSPGVGKS 60

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQLKI----WADRTSADFVCSEIGSDA 178
           T    L      AG +V + A D        A+   ++     A                
Sbjct: 61  TSTSALVSAYRKAGKRVGVLAVDPSSPFSGGALLGDRVRMSDHASDPGVYIRSMATRGHL 120

Query: 179 AALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
             LA+   +A +   A   +V++++T G   +                 +   A  SV+ 
Sbjct: 121 GGLAWAAPQAIRVLDAAGCEVILVETVGVGQSEVE--------------IASQADTSVVL 166

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
           +       + ++  +      G    ++ K D   
Sbjct: 167 LAPGM--GDGIQAAKAGILEIG-DVYVVNKADRDG 198


>gi|170718829|ref|YP_001783422.1| ATPase [Haemophilus somnus 2336]
 gi|168826958|gb|ACA32329.1| ATPase AAA-2 domain protein [Haemophilus somnus 2336]
          Length = 856

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 77/206 (37%), Gaps = 19/206 (9%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           K++      I +L K  A       + +T ++ +R  D+ + E L         G+ VA 
Sbjct: 497 KMSELQYGRIPELEKQLAQAESAEGKEMT-LLRNRVTDEEIAEVLSRA-----TGIPVA- 549

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNGV 122
           K++E    K    +  + + +   SE +  +   + +        +RP    L +G  GV
Sbjct: 550 KMMEGEKDKLLRMEQELHKRVVGQSEAVVAVANAIRRSRAGLSDPNRPIGSFLFLGPTGV 609

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKT +   L+        +  +   D       + ++  +           +G +     
Sbjct: 610 GKTELCKTLANF--MFDDENAMVRIDMS-----EFMEKHSVSRLVGAPPGYVGYEEGGYL 662

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNN 208
            EA ++   +   V+++D   + H++
Sbjct: 663 TEAVRR---RPYSVILLDEVEKAHSD 685


>gi|169342583|ref|ZP_02863635.1| ABC transporter, ATP-binding protein [Clostridium perfringens C
           str. JGS1495]
 gi|169299355|gb|EDS81422.1| ABC transporter, ATP-binding protein [Clostridium perfringens C
           str. JGS1495]
          Length = 596

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSD 137
           VVG+NG GKTT I  L++    
Sbjct: 381 VVGLNGAGKTTFIKLLARLYEP 402


>gi|166033418|ref|ZP_02236247.1| hypothetical protein DORFOR_03144 [Dorea formicigenerans ATCC
           27755]
 gi|166026603|gb|EDR45360.1| hypothetical protein DORFOR_03144 [Dorea formicigenerans ATCC
           27755]
          Length = 526

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  + L++  +L+     PLSKP N     R   I +VG NG+GKTT
Sbjct: 328 TPGKFLFETHDLVTGYDEPLSKPLNLSME-RGQKIALVGTNGIGKTT 373


>gi|146164901|ref|XP_001014311.2| Adenylate kinase family protein [Tetrahymena thermophila]
 gi|146145641|gb|EAR94066.2| Adenylate kinase family protein [Tetrahymena thermophila SB210]
          Length = 436

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           EL+  M   +    N     R   ILV+G  G G++T+  KL++K 
Sbjct: 234 ELLEDMARLMEFKINPKGPKRSARILVIGPPGSGRSTLAKKLAQKY 279


>gi|153815872|ref|ZP_01968540.1| hypothetical protein RUMTOR_02117 [Ruminococcus torques ATCC 27756]
 gi|317502121|ref|ZP_07960301.1| hypothetical protein HMPREF1026_02245 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331090367|ref|ZP_08339248.1| hypothetical protein HMPREF1025_02831 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846897|gb|EDK23815.1| hypothetical protein RUMTOR_02117 [Ruminococcus torques ATCC 27756]
 gi|316896480|gb|EFV18571.1| hypothetical protein HMPREF1026_02245 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330401114|gb|EGG80707.1| hypothetical protein HMPREF1025_02831 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 469

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  ++G NGVGK+T I K++K +   G     
Sbjct: 301 IYFIIGENGVGKSTFIKKMAKLLKGKGKSFYC 332


>gi|115944006|ref|XP_001180308.1| PREDICTED: similar to zinc finger protein [Strongylocentrotus
           purpuratus]
          Length = 1963

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 54  IRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           IR+D +  A   +  +        ++   ++ + D ++++    + ++  F       P 
Sbjct: 430 IRADPLNPASVVQFKDMYTNLVLQEEHGTEKRMLDYNDILK---LEVNGEF-------PK 479

Query: 113 VILVVGVNGVGKTTVIGKLSK 133
            I+V G  G GKTT   K++ 
Sbjct: 480 RIMVQGEAGAGKTTFCAKIAW 500


>gi|115676899|ref|XP_001184399.1| PREDICTED: similar to CARD15, partial [Strongylocentrotus
           purpuratus]
          Length = 1092

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 54  IRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           IR+D +  A   +  +        ++   ++ + D ++++    + ++  F       P 
Sbjct: 430 IRADPLNPASVVQFKDMYTNLVLQEEHGTEKRMLDYNDILK---LEVNGEF-------PK 479

Query: 113 VILVVGVNGVGKTTVIGKLSK 133
            I+V G  G GKTT   K++ 
Sbjct: 480 RIMVQGEAGAGKTTFCAKIAW 500


>gi|88601557|ref|YP_501735.1| cobyrinic acid a,c-diamide synthase [Methanospirillum hungatei
           JF-1]
 gi|88187019|gb|ABD40016.1| Cobyrinic acid a,c-diamide synthase [Methanospirillum hungatei
           JF-1]
          Length = 258

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           IL+ G  G GK+T+   L++     G KVM+   D
Sbjct: 3   ILICGKGGSGKSTLTALLAEYYGKDGKKVMVVDTD 37


>gi|1066130|gb|AAB36585.1| ABC-transporter [Gorilla gorilla]
          Length = 703

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +    R  V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTL-RRGEVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|89897310|ref|YP_520797.1| hypothetical protein DSY4564 [Desulfitobacterium hafniense Y51]
 gi|89336758|dbj|BAE86353.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 273

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           P   +      V+ + G  G GKTTV  +L+K ++D    V L   D
Sbjct: 20  PAPEELKPDVQVLAIWGSPGSGKTTVSVRLAKHLADQKKNVALLLCD 66


>gi|307262593|ref|ZP_07544224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306872091|gb|EFN03804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 255

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGV-GKTTVIGKLSKKMSDAGLKVMLAAG--- 147
           + ++L  ++  F  + S +     +VGV G  GKTT    L++  +  G K  +      
Sbjct: 97  LARILSEIAGAFYANPSEKLT---LVGVTGTNGKTTSAQLLAQWHNLLGGKSAVMGTIGN 153

Query: 148 ----DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDT 201
                   +A      I   R  ADFV       A  ++     Q  A+A   D+ +   
Sbjct: 154 GLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEALSYDLAVFTN 213

Query: 202 AGRLHNNSILMAGI 215
             R H +       
Sbjct: 214 LSRDHLDYHKTMEE 227


>gi|299782943|gb|ADJ40941.1| Possible xenobiotic-transporting ATPase [Lactobacillus fermentum
           CECT 5716]
          Length = 610

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           PL + FN       H++ +VG  G GKTT+I  L +     G  + L   DT
Sbjct: 383 PLIQDFNLKAEQ-NHMVAIVGPTGAGKTTIINLLERFYDVKGGHIYLDGRDT 433


>gi|293397138|ref|ZP_06641412.1| partitioning protein [Serratia odorifera DSM 4582]
 gi|291420609|gb|EFE93864.1| partitioning protein [Serratia odorifera DSM 4582]
          Length = 211

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           I+++G    GVGK+T    ++  +    G   ++   D  + + +       +      +
Sbjct: 2   IVLIGSQKGGVGKSTKAVNIAGYLILKEGKTAIIVDADDQK-SIMTWYNDRQNGDGLPHI 60

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                S               +  D +I+DTAGR    
Sbjct: 61  PVVAASGKIKETLLEL----NRHYDYVIVDTAGRDSAE 94


>gi|289767057|ref|ZP_06526435.1| chaperone [Streptomyces lividans TK24]
 gi|289697256|gb|EFD64685.1| chaperone [Streptomyces lividans TK24]
          Length = 837

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 15/140 (10%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            L  + +A+ V     +  VS  + +    +  P            L +G  GVGKT + 
Sbjct: 529 RLEEEMHARIVGQDEAVTAVSRAVRRNRAGMGDP-----DRPVGSFLFLGPTGVGKTELA 583

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L++ +   G +  +   D          +     T A  V +  G      A +  ++
Sbjct: 584 KTLAELL--FGEENRMIRFDMS--------EFQEKHTVARLVGAPPGYVGYEEAGQLTEK 633

Query: 189 AQAKKVDVLIIDTAGRLHNN 208
            + +   V++ D   + H +
Sbjct: 634 VRRQPYSVVLFDEVEKAHPD 653


>gi|262393376|ref|YP_003285230.1| cell division protein FtsH [Vibrio sp. Ex25]
 gi|262336970|gb|ACY50765.1| cell division protein FtsH [Vibrio sp. Ex25]
          Length = 660

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 162 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 215

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 216 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 259

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 260 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 308


>gi|258622751|ref|ZP_05717769.1| adenylylsulfate kinase [Vibrio mimicus VM573]
 gi|258584939|gb|EEW09670.1| adenylylsulfate kinase [Vibrio mimicus VM573]
          Length = 220

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             RP V+   G++G GK+TV G L  ++++ G    L  GD  R  
Sbjct: 41  EQRPAVLWFTGLSGAGKSTVAGALENRLAELGYHTYLLDGDNVRHG 86


>gi|237736013|ref|ZP_04566494.1| nucleotide-binding protein [Fusobacterium mortiferum ATCC 9817]
 gi|229421894|gb|EEO36941.1| nucleotide-binding protein [Fusobacterium mortiferum ATCC 9817]
          Length = 274

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 104 NWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           N   +H  +VI ++ G  GVGK+TV   L+K ++  G KV +   D
Sbjct: 24  NNPLNHIKNVIGIMSGKGGVGKSTVTTLLAKDLAKRGYKVGILDAD 69


>gi|183983019|ref|YP_001851310.1| gluconate kinase [Mycobacterium marinum M]
 gi|183176345|gb|ACC41455.1| gluconate kinase [Mycobacterium marinum M]
          Length = 171

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           S +P  I+V+GV G GKTTV   LS+++      V     DT    A
Sbjct: 6   SPKPSPIVVMGVCGAGKTTVAAALSQRL-----GVPFMEADTLHPQA 47


>gi|162453921|ref|YP_001616288.1| carbohydrate ABC transporter [Sorangium cellulosum 'So ce 56']
 gi|161164503|emb|CAN95808.1| ABC transporter family carbohydrate exporter [Sorangium cellulosum
           'So ce 56']
          Length = 663

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 81/231 (35%), Gaps = 32/231 (13%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPF--NWDFSHRP- 111
           GVA A+++ E L  +  + D +    L  VS  +    +       +P   + D + +P 
Sbjct: 382 GVASAERVFELLDEQGQSPDATPPAALPKVSGEVRFEHVTFRYKPDEPLIEDLDLTIKPG 441

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR---------SAAIDQLKIWA 162
             + +VG  G GKTT++  L +     G ++++   D  R            + Q     
Sbjct: 442 QTVAIVGPTGAGKTTLVNLLMRFYELDGGRILIDGVDIARLPRHELRAKLGIVLQDTWLF 501

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAK--------KVDVLIIDTAGRLHNNSILMAG 214
             T  D +     +   A   EA + A             D +I + +G       L AG
Sbjct: 502 SGTIRDNIAFGNATATEADIQEAARAAHVDRFVRALPAGYDTVIDEDSG------NLSAG 555

Query: 215 IGKMIRVLKRLDPHAPHSVL--QVLDATTGQNALRQVEMFHAVAGTTGLIM 263
             ++I + +    +    +L        T    L Q  M    A  T  ++
Sbjct: 556 EKQLITIARAFLANPAILILDEATSSVDTRTEVLVQRAMAALRARRTSFVI 606


>gi|158285754|ref|XP_308444.4| AGAP007388-PA [Anopheles gambiae str. PEST]
 gi|157020145|gb|EAA04265.4| AGAP007388-PA [Anopheles gambiae str. PEST]
          Length = 5799

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 40/145 (27%), Gaps = 21/145 (14%)

Query: 61   AVAQKIVEELLT----KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
             V + I+E L      +            +D+  +   +L   +  FN         +L+
Sbjct: 1436 KVTRFILERLRESAPLEENRPGTEGIVWTFDMRRM--AVLTAKALQFNEP-------VLL 1486

Query: 117  VGVNGVGKTTVIGKLSKK----MSDAGLKVMLAAGDT---FRSAAIDQLKIWADRTSADF 169
            VG  G GKTTV   L+      +      +     D     R    DQ     +      
Sbjct: 1487 VGPTGCGKTTVCQLLASLQCRTLRILNCHMHTEGADFLGGLRPYRSDQSDAMDED-GVQP 1545

Query: 170  VCSEIGSDAAALAYEAFKQAQAKKV 194
            V  +             +  Q    
Sbjct: 1546 VGQKKHQLFEWSDGPLVQSMQEGGF 1570


>gi|153840418|ref|ZP_01993085.1| ATP-dependent metallopeptidase HflB [Vibrio parahaemolyticus
           AQ3810]
 gi|149745920|gb|EDM57050.1| ATP-dependent metallopeptidase HflB [Vibrio parahaemolyticus
           AQ3810]
          Length = 602

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 159 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 212

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 213 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 256

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 257 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 305


>gi|150400131|ref|YP_001323898.1| hypothetical protein Mevan_1389 [Methanococcus vannielii SB]
 gi|150012834|gb|ABR55286.1| conserved hypothetical protein [Methanococcus vannielii SB]
          Length = 453

 Score = 37.1 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 50/121 (41%), Gaps = 14/121 (11%)

Query: 8   SESLSWIRKLTKGFASTSL---KLKEGITDIISSRRLDDGVR---EELEDLLIRSDIGVA 61
            E LS   +  + + +      KL+  ++++ + ++L + ++   +EL ++L   +    
Sbjct: 306 KEQLSLFERQKETYENLKSEYSKLQNEVSELTNYKKLSNELKKKIDELMEILGEKE---E 362

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-----RPHVILV 116
              ++V+ +      K+ ++  +L D    + +++         +        +P V  +
Sbjct: 363 YISELVDRIGNYESQKNETLMNILIDEERELIELIKEHGSISQKEIVDITGLTKPKVSRM 422

Query: 117 V 117
           +
Sbjct: 423 I 423


>gi|323492036|ref|ZP_08097201.1| cell division protein FtsH [Vibrio brasiliensis LMG 20546]
 gi|323313765|gb|EGA66864.1| cell division protein FtsH [Vibrio brasiliensis LMG 20546]
          Length = 654

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 159 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 212

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 213 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 256

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 257 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 305


>gi|262066028|ref|ZP_06025640.1| chaperone protein ClpB [Fusobacterium periodonticum ATCC 33693]
 gi|291380278|gb|EFE87796.1| chaperone protein ClpB [Fusobacterium periodonticum ATCC 33693]
          Length = 616

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV-VGVNGV 122
           ++I EEL  +   +D ++ +    V ++I +     S   +     +P   L  VG  GV
Sbjct: 299 ERIEEELGKRVKGQDAAISK----VKDVIIRAYTGFSGLQHSSKQKKPKGTLFFVGPTGV 354

Query: 123 GKT 125
           GKT
Sbjct: 355 GKT 357


>gi|290961637|ref|YP_003492819.1| gluconokinase [Streptomyces scabiei 87.22]
 gi|260651163|emb|CBG74284.1| putative gluconokinase [Streptomyces scabiei 87.22]
          Length = 173

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
             PHV++V+GV G GKTT+   L+ ++      V  A GD F   A
Sbjct: 3   RTPHVVVVMGVAGTGKTTIGPLLASRL-----GVPYAEGDDFHPEA 43


>gi|256783178|ref|ZP_05521609.1| chaperone [Streptomyces lividans TK24]
          Length = 835

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 15/140 (10%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            L  + +A+ V     +  VS  + +    +  P            L +G  GVGKT + 
Sbjct: 527 RLEEEMHARIVGQDEAVTAVSRAVRRNRAGMGDP-----DRPVGSFLFLGPTGVGKTELA 581

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L++ +   G +  +   D          +     T A  V +  G      A +  ++
Sbjct: 582 KTLAELL--FGEENRMIRFDMS--------EFQEKHTVARLVGAPPGYVGYEEAGQLTEK 631

Query: 189 AQAKKVDVLIIDTAGRLHNN 208
            + +   V++ D   + H +
Sbjct: 632 VRRQPYSVVLFDEVEKAHPD 651


>gi|251809842|ref|ZP_04824315.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874499|ref|ZP_06283384.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis
           SK135]
 gi|251806615|gb|EES59272.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296638|gb|EFA89147.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis
           SK135]
          Length = 644

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS-KKMS 136
           D +    +  + +L      P++ P N +     H I ++G NGVGKTT+I  ++ K+  
Sbjct: 323 DRNTGNDVMHIHDLKIGYDSPITLPINLEIFKGDH-IAIIGPNGVGKTTLIKTIAEKQHK 381

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIW--ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
             G  +  A     +    DQ +    +++T  D+V  +              +    + 
Sbjct: 382 LGGQIIFGANL---QIGYYDQKQAEFKSNKTILDYVWDQYPHMNEKDVRAVLGRFLFVQE 438

Query: 195 DVLIID 200
           DV  I 
Sbjct: 439 DVKKII 444


>gi|228472138|ref|ZP_04056904.1| ATP-binding protein, Mrp/Nbp35 family [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276341|gb|EEK15065.1| ATP-binding protein, Mrp/Nbp35 family [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 378

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 74/238 (31%), Gaps = 31/238 (13%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           + V + + I  E+  K   K V++   +   S+         ++          ++I V 
Sbjct: 57  VEVEIMKAIHAEVYEKAKVK-VNITVEVAPTSQ--------TNEIKGKPIEGIKNIIAVA 107

Query: 118 -GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
            G  GVGK+TV   L+  +   G KV L   D +                  F   E   
Sbjct: 108 SGKGGVGKSTVTANLAVALRKMGFKVGLLDADIY-----------GPSIPMMFDVQEERP 156

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL--DPHAPHSVL 234
            +  +   + K    +   V I+      H +  ++       + L ++  D        
Sbjct: 157 ISVEIDGRS-KMKPVENYGVKILSIGFFTHPDQAVIWRGPMASKALNQMIFDADWGELDF 215

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD-----GTARGGGLIPIVVTHKIPVY 287
            ++D   G   +            TG I+           AR G  +    T  +PV 
Sbjct: 216 LLIDLPPGTGDIH--LSIMQALPITGAIVVSTPQNVALADARKGIAMFRQETINVPVL 271


>gi|226309710|ref|YP_002769604.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC
           100599]
 gi|226092658|dbj|BAH41100.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC
           100599]
          Length = 648

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K+  E   +    DV+         E +   L   ++ FN   +  P  +L+VG  G GK
Sbjct: 157 KLYNEEKKRVTFDDVAGADEEKAELEEVVDFLKD-NRKFNAVGARIPKGVLLVGPPGTGK 215

Query: 125 T 125
           T
Sbjct: 216 T 216


>gi|225718538|gb|ACO15115.1| GTP-binding ADP-ribosylation factor homolog 1 protein [Caligus
           clemensi]
          Length = 180

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 54/166 (32%), Gaps = 19/166 (11%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           +  +   F   F  +   IL++G++G GKTT    L  ++    +   +          +
Sbjct: 1   MGGVLSYFRGLFGGKETRILILGLDGAGKTT----LLYRLRAGEVVNTIPTIGFN----V 52

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
           +Q+     +     +  +         Y +   A      + ++D+A R          I
Sbjct: 53  EQVVYNNVKFQVWDLGGQTSIRPYWRCYYSNTDAI-----IYVVDSADRERMGISKTELI 107

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGL 261
             +       +    +++L V+      +    +   H   G + L
Sbjct: 108 SML------EEDELQNAILLVMANKQDLDDALTLPEIHEALGLSSL 147


>gi|240146604|ref|ZP_04745205.1| CobW/P47K family protein [Roseburia intestinalis L1-82]
 gi|257201228|gb|EEU99512.1| CobW/P47K family protein [Roseburia intestinalis L1-82]
 gi|291541062|emb|CBL14173.1| Putative GTPases (G3E family) [Roseburia intestinalis XB6B4]
          Length = 310

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 16/164 (9%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+ G  G GKTT + K +  +   G  + +   D     A++   +       D    E+
Sbjct: 6   LITGFLGSGKTTFLRKYASHLIAQGQNIGILENDF---GAVNVDMMLLGDLRGDNCELEM 62

Query: 175 GSDAAALAYEAFKQAQAK------KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            S          +             D +I++ +G    +        + +    ++   
Sbjct: 63  ISGGCDTDTHRRRFKTKLISMGMCGYDRVIVEPSGIYDVDEFFDTLHEEPLDGWYQIG-- 120

Query: 229 APHSVLQVLDATTGQNALRQVE--MFHAVAGTTGLIMTKMDGTA 270
              +V+ VLD+   ++     E  +    A    ++++K   T 
Sbjct: 121 ---NVITVLDSNLEEDLPEGAEFLLASQAANAGCVVLSKTQETT 161


>gi|255943357|ref|XP_002562447.1| Pc18g06200 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587180|emb|CAP94844.1| Pc18g06200 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1459

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 21   FASTSLKLKEGITDIISSRRLDDGVREELED--LLIRSDIGVAVAQKIVEELLTKRYAKD 78
              ST  KL E  ++I + RR  + ++EE+++    I +  G  +  + + ++      K+
Sbjct: 1134 LRSTRSKLSEVDSEIAAKRRELEQLQEEVKEKVTFIEA--GAEMRDEFLAQIQEAERVKE 1191

Query: 79   VSVQRVLYDVSEL 91
                    +++EL
Sbjct: 1192 ECRGWSAREINEL 1204


>gi|193212998|ref|YP_001998951.1| putative bifunctional molybdopterin-guanine dinucleotide
           biosynthesis protein MobB/MobA [Chlorobaculum parvum
           NCIB 8327]
 gi|193086475|gb|ACF11751.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Chlorobaculum parvum NCIB 8327]
          Length = 369

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 9/136 (6%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           P  I V G++G GKTT++ KL ++ S+ G +V        R       +I  +   +D  
Sbjct: 4   PFEIAVGGLSGSGKTTLVEKLIRRFSENGFEVAAFKHGCHR------FEIDREGKDSDRF 57

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
             +  +    +A    +   ++  D L  D AG   +  +L     K + + K L     
Sbjct: 58  T-KARAVPVLIADREKEALISRGTDRL--DIAGSTLSADLLFIEGLKELPIPKLLMVDRD 114

Query: 231 HSVLQVLDATTGQNAL 246
            +VL +L+       L
Sbjct: 115 RAVLPMLENGAIPQVL 130


>gi|167463565|ref|ZP_02328654.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 178

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             +  P V  VVG    GKTT++ KL   +   G +V     D
Sbjct: 3   KTASNPRVFQVVGYKNAGKTTLVCKLVHVLKTGGFRVGTVKHD 45


>gi|156975669|ref|YP_001446576.1| hypothetical protein VIBHAR_03404 [Vibrio harveyi ATCC BAA-1116]
 gi|156527263|gb|ABU72349.1| hypothetical protein VIBHAR_03404 [Vibrio harveyi ATCC BAA-1116]
          Length = 658

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 159 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 212

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 213 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 256

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 257 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 305


>gi|157311765|ref|NP_001098619.1| hypothetical protein LOC100008304 [Danio rerio]
 gi|156230259|gb|AAI51931.1| Zgc:171695 protein [Danio rerio]
          Length = 248

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 65/203 (32%), Gaps = 40/203 (19%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           D + +  VIL++G  G GKTT+I  +   +    L V     + ++    ++       +
Sbjct: 57  DKNKQNKVILMLGDTGAGKTTLINTMINHL----LGVKFEDQEFYQI--TEETDELLQTS 110

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                   +  +  +L                IIDT G  H                   
Sbjct: 111 EITVYEVFVEGNPTSLT---------------IIDTPGYAHTEGYKKDKEVAEYLAKLFA 155

Query: 226 DPHAPHS---VLQVLDATTGQNALRQVEMFHAVAGTTG--------LIMTKMDGTARGGG 274
           D    H    V  V+ A+  + + ++  +FH+V    G         ++T  DG      
Sbjct: 156 DEDGIHYIDAVCFVMKASQNRLSGKEFYIFHSVLSLFGRDIENNIVFLLTHSDGGPPADA 215

Query: 275 LIPI--------VVTHKIPVYFL 289
           L  I              PV+FL
Sbjct: 216 LNAIDKAEIPCRRDEDNEPVHFL 238


>gi|148544845|ref|YP_001272215.1| guanylate kinase [Lactobacillus reuteri DSM 20016]
 gi|184154184|ref|YP_001842525.1| guanylate kinase [Lactobacillus reuteri JCM 1112]
 gi|227363984|ref|ZP_03848084.1| guanylate kinase [Lactobacillus reuteri MM2-3]
 gi|325683189|ref|ZP_08162705.1| guanylate kinase [Lactobacillus reuteri MM4-1A]
 gi|148531879|gb|ABQ83878.1| guanylate kinase [Lactobacillus reuteri DSM 20016]
 gi|183225528|dbj|BAG26045.1| guanylate kinase [Lactobacillus reuteri JCM 1112]
 gi|227070906|gb|EEI09229.1| guanylate kinase [Lactobacillus reuteri MM2-3]
 gi|324977539|gb|EGC14490.1| guanylate kinase [Lactobacillus reuteri MM4-1A]
          Length = 190

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 14/136 (10%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRT 165
            +  +V +V G  G GKTTV    +  + D      +    T   R    D +    +  
Sbjct: 2   KNNKYVFIVTGAAGSGKTTV----ANYLQDHYDMHRVITHTTRLPRPGEQDGVDYHFETP 57

Query: 166 S-------ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           S        + V  +     ++L   A    +  K DV+++DTAG +  +  L A    +
Sbjct: 58  SSLKKLHLLEQVTYDQFQYGSSLEGLAEGW-EQGKNDVIVLDTAGAITYHQQLGAQAVII 116

Query: 219 IRVLKRLDPHAPHSVL 234
              +  +   A    L
Sbjct: 117 FLTVTHMASLAKRMTL 132


>gi|39936671|ref|NP_948947.1| putative ABC transporter ATP-binding protein [Rhodopseudomonas
           palustris CGA009]
 gi|192292495|ref|YP_001993100.1| ABC transporter ATP-binding protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39650527|emb|CAE29050.1| ABC transporter, ATPase component [Rhodopseudomonas palustris
           CGA009]
 gi|192286244|gb|ACF02625.1| ABC transporter related [Rhodopseudomonas palustris TIE-1]
          Length = 549

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 19/106 (17%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMP---LSKPF-------NWDFSHRPHVIL-V 116
           EELL K   K     +++  V+E +   ++    L+K F       +  F   P  I+ V
Sbjct: 289 EELLAKASEKQTQTAQIIIPVAERLGNNVVDFEHLTKGFGDKLLIDDLTFKLPPGGIVGV 348

Query: 117 VGVNGVGKTTVIGKLSKKM---SDAGLKVMLAAGDTFRSAAIDQLK 159
           +G NG GKTT+      +M    +   +  +  G+T     +DQ +
Sbjct: 349 IGPNGAGKTTLF-----RMITGQEKPDQGTITVGETVHLGYVDQSR 389


>gi|30410010|ref|NP_848467.1| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Mus
           musculus]
 gi|28279833|gb|AAH46557.1| DEAH (Asp-Glu-Ala-His) box polypeptide 38 [Mus musculus]
 gi|74150428|dbj|BAE32255.1| unnamed protein product [Mus musculus]
          Length = 1228

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 21/118 (17%)

Query: 58  IGVAVAQKIVEELLTK-------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           +     QK  + +  K          K +  QR    +  +  ++L  +           
Sbjct: 498 VDYRTEQKFADHMKEKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRD--------- 548

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTS 166
             +++VVG  G GKTT   +L++ + + G       G T   R AA+   K  ++   
Sbjct: 549 NSIVIVVGETGSGKTT---QLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMG 603


>gi|28899237|ref|NP_798842.1| cell division protein FtsH [Vibrio parahaemolyticus RIMD 2210633]
 gi|28807461|dbj|BAC60726.1| cell division protein FtsH [Vibrio parahaemolyticus RIMD 2210633]
 gi|328474228|gb|EGF45033.1| cell division protein FtsH [Vibrio parahaemolyticus 10329]
          Length = 662

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 162 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 215

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 216 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 259

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 260 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 308


>gi|68482739|ref|XP_714679.1| potential mitochondrial ATP-dependent protease [Candida albicans
           SC5314]
 gi|74679828|sp|Q59YV0|LONP2_CANAL RecName: Full=Lon protease homolog 2, peroxisomal
 gi|46436267|gb|EAK95632.1| potential mitochondrial ATP-dependent protease [Candida albicans
           SC5314]
          Length = 1258

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           Q+ + +    +   ++P ++      +++  +I++ G  G GK T + K
Sbjct: 692 QKSITEAKTNVSTKMVPSNESIQVSKNNKSPIIMLAGPPGTGK-TSLAK 739


>gi|332308054|ref|YP_004435905.1| twitching motility protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175383|gb|AEE24637.1| twitching motility protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 347

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           +D  R+E E+ L  +D    V  K +       + ++     VL  +   I  +    + 
Sbjct: 56  NDNQRKEYEENL-ETDFSFEV--KDLSRFRVNAFVQNRGAAAVLRTIPSKILSLDDLGAP 112

Query: 102 PFNWDFSHRPHVILVV-GVNGVGKTTVIG 129
               D  ++P  I++V G  G GK+T + 
Sbjct: 113 QIFKDIINQPTGIVLVTGATGSGKSTTLA 141


>gi|319793484|ref|YP_004155124.1| ATP-dependent helicase hrpa [Variovorax paradoxus EPS]
 gi|315595947|gb|ADU37013.1| ATP-dependent helicase HrpA [Variovorax paradoxus EPS]
          Length = 1305

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
               V++V G  G GKTT + K++  +   G   + A     R     Q +  A  + A 
Sbjct: 23  QANQVVIVCGETGSGKTTQLPKIALAL---GRGKINAEPGKGRLIGHTQPRRIAASSVAK 79

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLD 226
            +  E+ +    +     +       D L  D + +L  + IL+A      +++    L 
Sbjct: 80  RIAEELKTPLGDVVGFKVR-----FQDRLSRDASVKLMTDGILLAETQTDPLLKAYDTLI 134

Query: 227 PHAPHSVLQVLDATTGQ 243
               H     +D   G 
Sbjct: 135 IDEAHERSLNIDFLLGY 151


>gi|290994605|ref|XP_002679922.1| uridine kinase family protein [Naegleria gruberi]
 gi|284093541|gb|EFC47178.1| uridine kinase family protein [Naegleria gruberi]
          Length = 584

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +    +  +IL  G +  GKTT   KLS ++   G+K +  + D +
Sbjct: 315 FSRKDKVKLILAAGPSSSGKTTFAKKLSIQLEILGIKPVTISVDDY 360


>gi|260495333|ref|ZP_05815460.1| MRP-family nucleotide-binding protein [Fusobacterium sp. 3_1_33]
 gi|260197111|gb|EEW94631.1| MRP-family nucleotide-binding protein [Fusobacterium sp. 3_1_33]
          Length = 257

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 96  LMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++    P   +  +  +VI ++ G  GVGK+TV   L+K++   G  V +   D
Sbjct: 1   MIQKDAPKVKENKNIKNVIAVMSGKGGVGKSTVTTLLAKELRKKGYAVGVLDAD 54


>gi|317049658|ref|YP_004117306.1| type VI secretion ATPase, ClpV1 family [Pantoea sp. At-9b]
 gi|316951275|gb|ADU70750.1| type VI secretion ATPase, ClpV1 family [Pantoea sp. At-9b]
          Length = 881

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 75/213 (35%), Gaps = 27/213 (12%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
            L+  D    + +  ++ +L +R    V     L+ +++ +      L+       +   
Sbjct: 550 ALLMKDEQNELLR--LDAVLAQRI---VGQDHALHAIAQRLRATKTGLAAE-----NGPQ 599

Query: 112 HVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADF 169
            V L+VG +G GKT T +  L+  +      ++      ++ A  + QLK          
Sbjct: 600 GVFLLVGSSGTGKTETALA-LADTLYGGPRSLITLNLSEYQEAHTVSQLKGSP------- 651

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS-ILMAG--IGKMIRVLKRLD 226
               +G     +  EA    + +   V+++D   + H +   L         +R  +  +
Sbjct: 652 -PGYVGYGQGGILTEAV---RKRPYSVVLLDEVEKAHRDVLNLFYQVFDRGFMRDGEGRE 707

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
               H+V+ +         ++Q+      +   
Sbjct: 708 IDFRHTVILMTSNLGSDQLMQQLAQQPDASDAD 740


>gi|237801181|ref|ZP_04589642.1| general secretory pathway protein E [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024038|gb|EGI04095.1| general secretory pathway protein E [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 451

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 194 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 251


>gi|237743186|ref|ZP_04573667.1| MRP-family nucleotide-binding protein [Fusobacterium sp. 7_1]
 gi|229433482|gb|EEO43694.1| MRP-family nucleotide-binding protein [Fusobacterium sp. 7_1]
          Length = 257

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 96  LMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ++    P   +  +  +VI ++ G  GVGK+TV   L+K++   G  V +   D
Sbjct: 1   MIQKDAPKVKENKNIKNVIAVMSGKGGVGKSTVTTLLAKELRKKGYAVGVLDAD 54


>gi|224055341|ref|XP_002298489.1| predicted protein [Populus trichocarpa]
 gi|222845747|gb|EEE83294.1| predicted protein [Populus trichocarpa]
          Length = 748

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV--- 170
           I++VG+   GKT    KL++ +   G          +R     +LK      SADF    
Sbjct: 349 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR-----RLK-HGSNQSADFFRAD 402

Query: 171 ---CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
                E  ++ AALA +       +   V I D          ++  + +  
Sbjct: 403 NPEGMEARNEVAALAMDDMISWMQEGGQVGIFDATNSNRKRRNMLMKMAEGK 454


>gi|161407973|ref|YP_268268.2| parA family protein [Colwellia psychrerythraea 34H]
          Length = 262

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  +++ G +V+L   D   S +     I ++              +  
Sbjct: 12  GVGKTTTTIALAGILAEQGHRVLLIDTDPHASLSYY-FGIESEDLDLSVYELFTQVSSRE 70

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK---MIRVLKRLDPHAPHSVLQ 235
              +    +Q   +D+L   T G    +  L    G    + +V++++   +   VL 
Sbjct: 71  QILQTLCPSQYPNIDILPA-TMGLATLDRSLGNKGGMGLVLKKVVQKV-ADSYDYVLM 126


>gi|159046633|ref|YP_001542302.1| cobyrinic acid ac-diamide synthase [Dinoroseobacter shibae DFL 12]
 gi|157914392|gb|ABV95821.1| replication protein A [Dinoroseobacter shibae DFL 12]
          Length = 397

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 66/199 (33%), Gaps = 27/199 (13%)

Query: 91  LIHKMLMPLSKPFNWDFSHR-----PHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVML 144
            I + L   +K        R       VI VV    G GKTT    L+++++  G +V+ 
Sbjct: 87  EIRQTLEGTAKKSGTYVPGRRDGDELQVISVVNFKGGSGKTTTSAHLAQRLALKGYRVLA 146

Query: 145 AAGDTF-RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
              D     +A+  ++   D      +   +  D      E  ++   + +D++      
Sbjct: 147 IDLDPQASLSALHGIQPELDLMEGGTLYDAVRYDDPVPIAEVIRKTYIRGLDLI------ 200

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG--- 260
               N  LM    +    ++R    A              +AL  VE  + V        
Sbjct: 201 --PGNLELMEFEHETPAAIQRGGAKAFF--------ARVHDALDSVEANYDVVVIDCPPQ 250

Query: 261 -LIMTKMDGTARGGGLIPI 278
              +T    +A  G L+ +
Sbjct: 251 LGFLTMSALSASSGVLVTV 269


>gi|268580483|ref|XP_002645224.1| C. briggsae CBR-PGP-12 protein [Caenorhabditis briggsae]
          Length = 1316

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 18/132 (13%)

Query: 51  DLLIRSDIGVAVAQKIVEELLT------------KRYAKDVSVQRVLYDVSELIHKMLMP 98
            +L+ + +  A   ++++ +              K   + V         +    K+L  
Sbjct: 378 MVLLNARVAAATIYEVIDRVPEIDAYSNEGQKIDKIVGRVVFENVHFRYPTRKKAKVLNG 437

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           L+       S     + +VG +G GK+T +G L++       KVM+   +  R+  ID L
Sbjct: 438 LNLTIEPGTS-----VALVGHSGCGKSTSVGLLTRLYEQEDGKVMIDGHEV-RNLNIDWL 491

Query: 159 KIWADRTSADFV 170
           +        + +
Sbjct: 492 RKVVGIVQQEPI 503


>gi|15242300|ref|NP_199319.1| disease resistance protein (TIR-NBS-LRR class), putative
           [Arabidopsis thaliana]
 gi|9758979|dbj|BAB09489.1| disease resistance protein-like [Arabidopsis thaliana]
 gi|332007813|gb|AED95196.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]
          Length = 1165

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           I + L  L +  +        VI VVG+ G+GKTT++ +L    +  G     A  D  R
Sbjct: 210 IKQRLKELEEKLDLVKYKGTRVIGVVGMPGIGKTTLVKEL--YKTWQGKFSRYALIDQIR 267


>gi|67484706|ref|XP_657573.1| helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474840|gb|EAL52196.1| helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 811

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 17/100 (17%)

Query: 33  TDIISSRRLDDGVREEL-----EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
             I    ++DDG  E++     ED L          ++I+E L  K   +++  +R   D
Sbjct: 121 KSIDERSKIDDGSFEKMILQEDEDSL---------EREILE-LRAKEL-EEIPSKRTKQD 169

Query: 88  VSELIHKMLMPLSKPFN-WDFSHRPHVILVVGVNGVGKTT 126
               I K L    K            ++++ G  G GKTT
Sbjct: 170 EMNEIRKSLPVYQKREEFLKLVRNNQIVIIAGETGSGKTT 209


>gi|307215023|gb|EFN89850.1| Probable UPF0334 kinase-like protein C1orf57-like protein
           [Harpegnathos saltator]
          Length = 195

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 17/179 (9%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
                  RP  +L+ G  G+GKTTV  K++  +   G ++     +  R           
Sbjct: 1   METASVSRPLHVLLTGPPGIGKTTVCKKVASMLEKKGGRLDGFYTEEVR-------DRSG 53

Query: 163 DRTSADFVCSEIGSDAAALAY-EAFKQAQAK-KVDV----LIIDTAGRLHNNSILMAGIG 216
            R   D V         +LA  +   +AQ   K  V    + +D    +   ++      
Sbjct: 54  SRIGFDIVRVTDPERRLSLARLKGLTEAQKNSKYHVGNYSVSLDNFETVALPALDSDADI 113

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQ----NALRQVEMFHAVAGTTGLIMTKMDGTAR 271
            +I  + +++  +     +V+D   G     + +  V   H V      +  K+    R
Sbjct: 114 LLIDEIGKMELFSKDFKRRVIDIFFGTFGKASVIGTVPQTHKVPPQHATLFQKLHADGR 172


>gi|295107845|emb|CBL21798.1| Superfamily I DNA and RNA helicases [Ruminococcus obeum A2-162]
          Length = 1125

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 29/158 (18%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E++S+++K+           ++ + D  S   L     +EL                 V+
Sbjct: 62  ETISFMQKMDG---------EDMLEDFCSKNELSPEKVQELCT-------NYENIISFVD 105

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI------LVVGVNGV 122
            +       +  + R   +  E +  +L  +      D + R  ++      LVV   G 
Sbjct: 106 NI------NENYLSRKKQEEKEYLDNILKDIDPDICLDENQREVILSDEDHGLVVAGAGA 159

Query: 123 GKTTVI-GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           GKTT +  K+   +    +        +F + A+++L+
Sbjct: 160 GKTTTVAAKVKYLVEKQHIDPSQILIISFTNKAVNELR 197


>gi|222435698|ref|YP_002564126.1| gp28 [Mycobacterium phage Phlyer]
 gi|222088251|gb|ACM42192.1| gp28 [Mycobacterium phage Phlyer]
          Length = 1913

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELE------DLLIRSDI 58
           K+ +ES  ++ +L  G      +    IT I+ +  LD  + E +E      + L+  +I
Sbjct: 349 KLTAESSDFLPRLADGLTKVGERFNNWITKIVDNGDLDRWINEGIEAVGHFGNALL--NI 406

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           G     KI+  + TK    D    + L + +E +   L         
Sbjct: 407 G-----KILTSI-TKAAGGDGGFLKWLDEATEKLATFLASDEGQQKL 447


>gi|222100805|ref|YP_002535373.1| Phosphoribulokinase/uridine kinase precursor [Thermotoga
           neapolitana DSM 4359]
 gi|221573195|gb|ACM24007.1| Phosphoribulokinase/uridine kinase precursor [Thermotoga
           neapolitana DSM 4359]
          Length = 404

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 85  LYDVSELIHKM-LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           L  +SE +H+  +  ++     D   R  ++L+ G +  GKTT   +LS ++   GLK +
Sbjct: 274 LMLLSEALHEKKISDIADEITKDRRRR--LVLIAGPSSSGKTTFAKRLSLQLRVNGLKPV 331

Query: 144 LAAGDTF 150
             + D +
Sbjct: 332 AISLDDY 338


>gi|189197439|ref|XP_001935057.1| stage V sporulation protein K [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187981005|gb|EDU47631.1| stage V sporulation protein K [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 1762

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 13/30 (43%)

Query: 111  PHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            P   L  G  G GKTT   K+ K   D G 
Sbjct: 1318 PFNFLFKGPPGTGKTTTAAKMGKIFYDMGF 1347


>gi|169629069|ref|YP_001702718.1| putative arsenite-transporting ATPase [Mycobacterium abscessus ATCC
           19977]
 gi|169241036|emb|CAM62064.1| Putative arsenite-transporting ATPase [Mycobacterium abscessus]
          Length = 423

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 13/89 (14%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L VG  GVGK+T+ G  + + + AG +V+  + D        Q     D        S  
Sbjct: 21  LFVGKGGVGKSTLAGATAVRHARAGQRVLAVSTD--------QAHSLGDVFGVRVDPS-- 70

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
                A      +     ++DV+ +DT G
Sbjct: 71  ---PGAHCVRVIEDPYGGELDVMALDTLG 96


>gi|163760971|ref|ZP_02168049.1| urease accessory protein [Hoeflea phototrophica DFL-43]
 gi|162281752|gb|EDQ32045.1| urease accessory protein [Hoeflea phototrophica DFL-43]
          Length = 203

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 71/205 (34%), Gaps = 37/205 (18%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKIWA-DRTSA 167
           G  G GKT +  KL K M D    + +   D +         R  A+   ++   +    
Sbjct: 7   GPVGSGKTALTDKLCKAMRDR-WSIAVITNDIYTREDAEALVRMQALPSDRVMGVETGGC 65

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                   +     A +A  + +   +DV++I++ G       L A             P
Sbjct: 66  PHTAIREDASLNLRAIDALNE-RHPDLDVILIESGG-----DNLAATFS----------P 109

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVV------T 281
                 + V+    G+   R  +   A+  +  L++ KMD     G  + ++        
Sbjct: 110 DLADLTIYVISVCQGEEIPR--KGGPAITRSDLLVINKMDLAPHVGADLDVMARDADSGR 167

Query: 282 HKIPVYFLGV--GEGINDLEPFVAK 304
              P  F  +  G GI D+  F+A+
Sbjct: 168 AGRPFLFTDMRRGAGIEDVVAFIAE 192


>gi|114566907|ref|YP_754061.1| ABC transporter ATP-binding protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337842|gb|ABI68690.1| putative ABC transporter ATP-binding protein; RBL01943
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 288

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 104 NWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
              FS     I+  +G NG GKTT I  L   M   G  + +   D  R
Sbjct: 21  KVSFSLPQGYIMGFIGPNGAGKTTTIKLLMNLMHRDGGDIRVFGLDNRR 69


>gi|330447383|ref|ZP_08311032.1| putative cell division protein FtsH [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491574|dbj|GAA05529.1| putative cell division protein FtsH [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 602

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 111 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 164

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 165 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 208

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 209 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 257


>gi|300787410|ref|YP_003767701.1| multidrug ABC transporter ATPase/permease [Amycolatopsis
           mediterranei U32]
 gi|299796924|gb|ADJ47299.1| fused ATPase and permease components of ABC-type multidrug
           transport system [Amycolatopsis mediterranei U32]
          Length = 633

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDA 138
           +VGVNG GKTT++  L++     
Sbjct: 406 LVGVNGAGKTTLVKLLARLYEPE 428


>gi|319762957|ref|YP_004126894.1| twitching motility protein [Alicycliphilus denitrificans BC]
 gi|330825037|ref|YP_004388340.1| twitching motility protein [Alicycliphilus denitrificans K601]
 gi|317117518|gb|ADV00007.1| twitching motility protein [Alicycliphilus denitrificans BC]
 gi|329310409|gb|AEB84824.1| twitching motility protein [Alicycliphilus denitrificans K601]
          Length = 387

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 79/226 (34%), Gaps = 36/226 (15%)

Query: 32  ITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL 91
           + +I+   R+     EELE+     ++GV +    V         +  +   V+  +++ 
Sbjct: 52  LAEIVPPERI-----EELEETG-ELNMGVPLTG--VGRFRISAMRQRGTYAVVIRFIAQE 103

Query: 92  IHKM----LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           I K+    L P+      +      +ILVVG  G GK+T    L+  + +    +     
Sbjct: 104 IPKLSTLNLPPVLGALIMEKRG---LILVVGATGSGKSTT---LAAMLDERNEAM----- 152

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
            T     ++    +  +     V              A K A  +  DV++I   G + +
Sbjct: 153 -TGHILTVEDPVEYQFKNKRSIVNQREIGGDTQSLQTALKNALRQAPDVILI---GEIRD 208

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
              + A I             + H  L  L      +AL ++  F+
Sbjct: 209 RETMSAAIA---------YAQSGHLCLATLHGNNSYHALNRILSFY 245


>gi|283953780|ref|ZP_06371311.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni 414]
 gi|283794821|gb|EFC33559.1| ATP/GTP-binding protein [Campylobacter jejuni subsp. jejuni 414]
          Length = 368

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 95/288 (32%), Gaps = 46/288 (15%)

Query: 14  IRKLTK----GFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVE 68
           + KL      GF    +       + +   ++ D+GV  ++E +   +     VA +I +
Sbjct: 6   LEKLKTVKYPGFEKDIVSF-----NFVKDIKIQDNGVLIDIEIV--SA--NPEVANEIRK 56

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +  +  +        L  +   I +         N     +  +++  G  GVGK+T  
Sbjct: 57  NV-NEALSSLALKNIELNIIVPKIPEEKSNSRSGKNIAPQVKNFIMVSSGKGGVGKSTTT 115

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+  M+  G +V +   D +               +   +  E  +    +  +  K 
Sbjct: 116 VNLAISMAKMGKRVGILDADIYGP-------------NIPRMLGETKTQP-EVVGQRLKP 161

Query: 189 AQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQV----LDATTGQ 243
             +     + + + G L      LM     +++ +++L        L V    +   TG 
Sbjct: 162 ILSHG---VYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD 218

Query: 244 NALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIPIVVTHKIPVY 287
             +   +     AG    + T     +D + R    + +     IP+ 
Sbjct: 219 AQITSAQSIPITAGV--CVSTPQTVSLDDSKR---ALDMFNKLHIPIA 261


>gi|269839379|ref|YP_003324071.1| ABC transporter [Thermobaculum terrenum ATCC BAA-798]
 gi|269791109|gb|ACZ43249.1| ABC transporter related protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 620

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            P+ K  N   +     I +VG  G GKTT++  L++   
Sbjct: 381 TPVLKHINLRAAPG-QTIALVGPTGAGKTTIVNLLARFYE 419


>gi|226475856|emb|CAX72018.1| ADP-ribosylation factor 3 [Schistosoma japonicum]
          Length = 181

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
           +  L       FS     IL+VG++  GKTT + KL  
Sbjct: 1   MGGLLTTIKSYFSKMEARILMVGLDAAGKTTTLYKLKL 38


>gi|269837856|ref|YP_003320084.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
 gi|310943107|sp|D1C4U5|FTSH3_SPHTD RecName: Full=ATP-dependent zinc metalloprotease FtsH 3
 gi|269787119|gb|ACZ39262.1| ATP-dependent metalloprotease FtsH [Sphaerobacter thermophilus DSM
           20745]
          Length = 489

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 25/167 (14%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           L +  E + +++  L  P  +    +  P  +L+ G  G GKT     L++ ++      
Sbjct: 60  LIEAKEELAEIVTFLRDPERFRRMGARMPRGVLLAGPPGTGKT----LLARAVAGEAGVP 115

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK-KVDVLIIDT 201
             A                +     +            L   A K + A   +D   ID 
Sbjct: 116 FFA---------------MSASQFVEVYVGVGAKRVRDLFAAARKASPAIVFIDE--IDA 158

Query: 202 AGRLHNNSILMAGIGK-MIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR   +S       + + +VL  LD   P   + V+ AT   + L 
Sbjct: 159 IGRRRGDSQSHQEYEQTLNQVLVELDGFHPRQAVVVIAATNRSDILD 205


>gi|258517203|ref|YP_003193425.1| adenylylsulfate kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780908|gb|ACV64802.1| adenylylsulfate kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 181

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             G++G GKTT+  KL K++   G K     GD  R  
Sbjct: 9   FTGMSGAGKTTLGEKLVKELRFRGFKADGLDGDVVRQG 46


>gi|227514460|ref|ZP_03944509.1| possible xenobiotic-transporting ATPase [Lactobacillus fermentum
           ATCC 14931]
 gi|227087146|gb|EEI22458.1| possible xenobiotic-transporting ATPase [Lactobacillus fermentum
           ATCC 14931]
          Length = 613

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           PL + FN       H++ +VG  G GKTT+I  L +     G  + L   DT
Sbjct: 386 PLIQDFNLKAEQ-NHMVAIVGPTGAGKTTIINLLERFYDVKGGHIYLDGRDT 436


>gi|225572173|ref|ZP_03781037.1| hypothetical protein RUMHYD_00467 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040345|gb|EEG50591.1| hypothetical protein RUMHYD_00467 [Blautia hydrogenotrophica DSM
           10507]
          Length = 588

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            + +VE+L      +++  +     V     + L P  K  ++       V  +VG +G 
Sbjct: 328 TKPLVEDLGENISPEEILPEIQFEHVRFQYREELEPALKDISFCVRSGETV-ALVGPSGA 386

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           GK+T I  L +       ++ +   D  R  +++ L+  +     D  
Sbjct: 387 GKSTCIQLLLRYWEPQNGQIKIGGKDL-REISLESLRQLSSAVLQDVY 433


>gi|221369309|ref|YP_002520405.1| ABC transporter related [Rhodobacter sphaeroides KD131]
 gi|221162361|gb|ACM03332.1| ABC transporter related [Rhodobacter sphaeroides KD131]
          Length = 257

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           +  ++G NG GKTTV   L+K +     K+ L   D  R+
Sbjct: 40  IHALIGPNGAGKTTVFNLLTKFLQPTRGKITLLGTDITRT 79


>gi|212696774|ref|ZP_03304902.1| hypothetical protein ANHYDRO_01336 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676218|gb|EEB35825.1| hypothetical protein ANHYDRO_01336 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 580

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI  +G  GVGKTTV   ++  +S  G KV L   D       D LK          + 
Sbjct: 326 KVIFTMGKGGVGKTTVAAAIALGLSKKGKKVHLTTTD-----PADHLKYTIKENENLSIS 380

Query: 172 S-EIGSDAAALAYEAFKQAQAKKVD 195
             +   +      E  ++A+    D
Sbjct: 381 HIDEKLELEKYRKEVLQKAKETMSD 405


>gi|224534346|ref|ZP_03674924.1| endopeptidase LA [Borrelia spielmanii A14S]
 gi|224514448|gb|EEF84764.1| endopeptidase LA [Borrelia spielmanii A14S]
          Length = 806

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 22/131 (16%)

Query: 26  LKLKEGITDIISSRRLDDGVREELED-LLIRSDIGVAVAQKIVE----ELLTKRYAKDVS 80
            KLK  +  +       + V +ELE   L+ +    + A+ IV     EL+T+   +D+ 
Sbjct: 283 EKLKTKLKALELKGESLEVVEKELEKFSLLET----SSAEYIVIRNYLELVTELPWRDLK 338

Query: 81  VQRVLYDVSE-------------LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +     D+ +              +   ++          + +  +IL+VG  GVGKT++
Sbjct: 339 INFDKLDLQKSKKILDKTHYGMTEVKNRIIEYISVLKLRKTQKGAIILLVGPPGVGKTSI 398

Query: 128 IGKLSKKMSDA 138
              ++K +   
Sbjct: 399 GAAIAKVLRTK 409


>gi|184154896|ref|YP_001843236.1| multidrug ABC transporter ATP-binding and permease components
           [Lactobacillus fermentum IFO 3956]
 gi|183226240|dbj|BAG26756.1| multidrug ABC transporter ATP-binding and permease components
           [Lactobacillus fermentum IFO 3956]
          Length = 613

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           PL + FN       H++ +VG  G GKTT+I  L +     G  + L   DT
Sbjct: 386 PLIQDFNLKAEQ-NHMVAIVGPTGAGKTTIINLLERFYDVKGGHIYLDGRDT 436


>gi|152980972|ref|YP_001352846.1| recombination factor protein RarA [Janthinobacterium sp. Marseille]
 gi|151281049|gb|ABR89459.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 433

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 12/209 (5%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELI-HKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGK 124
           + +L  +  A  ++       + E++    L+   KP    F S +PH ++  G  GVGK
Sbjct: 1   MSDLFAREPAAPLAEALRPKTLDEVVGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 60

Query: 125 TTVIGKL-SKKMSDAGLKVMLAAGDTFRS-AAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           TT + +L +       + +           AA++Q +          +  +         
Sbjct: 61  TT-LARLTASAFECEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQ 119

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
            +A            ++   G    N         + R    +        L+ L     
Sbjct: 120 QDALLPYAESG----LVTFIGATTENPSFEVNSALLSRAQVYVLKSLSDEELKQLLQRAQ 175

Query: 243 QNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           + AL  ++           I+   DG AR
Sbjct: 176 EKALGDLQFDEQATD---TIIGYADGDAR 201


>gi|149370159|ref|ZP_01890010.1| putative transmembrane AAA-metalloprotease FtsH [unidentified
           eubacterium SCB49]
 gi|149356650|gb|EDM45206.1| putative transmembrane AAA-metalloprotease FtsH [unidentified
           eubacterium SCB49]
          Length = 654

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 25/186 (13%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E++  K   KDV+      +  + I   L    K +       P   L+VG  G GKT  
Sbjct: 194 EKVDVKTSFKDVAGLEGAKEEVQEIVDFLKNPEK-YTSLGGKIPKGALLVGPPGTGKT-- 250

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L++ ++        +   +                  +       S    L  +A +
Sbjct: 251 --LLARAVAGEAKVPFFSLSGS---------------DFVEMFVGVGASRVRDLFKQAKE 293

Query: 188 QAQAKKVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           ++ +    +  ID  GR    S +          + ++L  +D     + + V+ AT   
Sbjct: 294 KSPSIIF-IDEIDAIGRARGKSNMSGSNDERENTLNQLLTEMDGFGTGTNVIVIAATNRA 352

Query: 244 NALRQV 249
           + L + 
Sbjct: 353 DVLDKA 358


>gi|159900501|ref|YP_001546748.1| LAO/AO transport system ATPase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893540|gb|ABX06620.1| LAO/AO transport system ATPase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 324

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 11/161 (6%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           EL+ K  A +      L  + E         +    + ++   H++ V G  G GK+T++
Sbjct: 2   ELVAKARAGNRRALARLITLVEA-GDAQAQTALAALYPYTGHAHIVGVTGAPGTGKSTLV 60

Query: 129 GKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRTSAD-------FVCSEIGSDA 178
            +++      G  V + A D    F   AI   +I       D                 
Sbjct: 61  TQMALHWRSLGRTVAVLAVDPTSPFSGGAILGDRIRMQALGGDSGCYIRSMASRGSLGGL 120

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           +    +A K   A   D++I++T G       +      ++
Sbjct: 121 SRATGDAVKALDAAGFDIVIVETVGAGQAEVEIAREAHTVV 161


>gi|107024176|ref|YP_622503.1| ATPase AAA [Burkholderia cenocepacia AU 1054]
 gi|105894365|gb|ABF77530.1| ATPase AAA-2 [Burkholderia cenocepacia AU 1054]
          Length = 681

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 404 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADILYGGERKMVTINMSEYQEAHSVSGLK- 461

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H + + M        
Sbjct: 462 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKG 511

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 512 TMDDAEGREIDFRNTLIILTSNVGSAAVMQA 542


>gi|54024116|ref|YP_118358.1| putative ABC transporter [Nocardia farcinica IFM 10152]
 gi|54015624|dbj|BAD56994.1| putative ABC transporter [Nocardia farcinica IFM 10152]
          Length = 629

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P+   F  D      V+ +VG  G GK+T+   L++     G +V L   D  R    D
Sbjct: 402 GPVLPEFTLDIPAG-QVVALVGPTGAGKSTLAKLLTRFYDPTGGRVTLDGVDLRRLTDAD 460

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYE 184
            L+          V  E    + ++A  
Sbjct: 461 -LRRH-----VVMVTQESYLFSGSVADN 482


>gi|268563933|ref|XP_002638972.1| Hypothetical protein CBG22213 [Caenorhabditis briggsae]
          Length = 452

 Score = 37.1 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 33  TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI 92
            +      ++      ++D+L          + I E+          +    + +  ELI
Sbjct: 130 KEFFKKENINVIFWSAMDDVL----------ETITEDGEESAVPSTSTSDMFVTNKDELI 179

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            K         + + S +P ++ +VG   VGK++ I KL+
Sbjct: 180 AKF--KELGHVSDEPSAKPVMVGMVGYPNVGKSSTINKLA 217


>gi|332978494|gb|EGK15206.1| HrpA family ATP-dependent helicase [Psychrobacter sp. 1501(2011)]
          Length = 1433

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 17/107 (15%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----- 166
            VI+V G  G GKTT + KL+  ++  G+   +      R AA       A+        
Sbjct: 129 QVIIVAGETGSGKTTQLPKLA-MLAGRGITGQIGHTQPRRLAARSVANRIAEELGEQLGD 187

Query: 167 -----ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTA 202
                  F           L  +    A+          D +IID A
Sbjct: 188 TVSFKIRFNEQGTAKSVVKLMTDGILLAELGHDRFLSKYDTIIIDEA 234


>gi|301168410|emb|CBW28000.1| putative transport system kinase [Bacteriovorax marinus SJ]
          Length = 322

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 69/216 (31%), Gaps = 41/216 (18%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +   +    +  EL+ K+L           +  P         GVGK+T I      +  
Sbjct: 26  ESKREDHRIEAQELLEKLLPKSGNSIRIGITGTP---------GVGKSTFIESFGLYLIS 76

Query: 138 AGLKVMLAAGDTFRS---AAIDQLKIWADRTSAD----FVCSEIGSDAAALAYEAFKQA- 189
            G +V + A D        +I   K   ++ S D       S        +A +  + A 
Sbjct: 77  KGHRVAVLAVDPSSPISGGSIMGDKTRMEKLSQDDSAFIRPSPSSGSLGGVATKTRETAI 136

Query: 190 --QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A   DV++I+T G   +                  +  +      VL      + L+
Sbjct: 137 LCEAAGYDVILIETVGVGQSE----------------FEVASMVDFFLVLMLPNAGDELQ 180

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
            ++          +++ K+DG +     + +    K
Sbjct: 181 GIKKGILELA-DSIVINKVDGDS-----VNLANQTK 210


>gi|296127982|ref|YP_003635232.1| ATP-dependent helicase HrpA [Cellulomonas flavigena DSM 20109]
 gi|296019797|gb|ADG73033.1| ATP-dependent helicase HrpA [Cellulomonas flavigena DSM 20109]
          Length = 1560

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 51/149 (34%), Gaps = 23/149 (15%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD--- 168
            V++V G  G GKTT + K++ ++   G    +      R AA    +  AD        
Sbjct: 159 QVVVVAGETGSGKTTQLPKIALEL-GRGRAGQIGHTQPRRIAARTVAERIADELGVPLGG 217

Query: 169 -------FVCSEIGSDAAALAYEAFKQAQ------AKKVDVLIIDTAGRLHNNSILMAGI 215
                  F      S    +  +    AQ       +  D LIID A     N      I
Sbjct: 218 VVGYQVRFTDESSDSTLVKVMTDGILLAQIQRDPMLRMYDTLIIDEAHERSLN------I 271

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             ++  L RL P  P   L +  AT   +
Sbjct: 272 DFILGYLTRLLPQRPDLKLVITSATIDSD 300


>gi|294497176|ref|YP_003560876.1| putative efflux ABC transporter ATP-binding protein [Bacillus
           megaterium QM B1551]
 gi|294347113|gb|ADE67442.1| putative efflux ABC transporter, ATP-binding protein [Bacillus
           megaterium QM B1551]
          Length = 518

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-SDA 138
           +  +++++ S+L+     PLSKP N     R   I +VG NG+GKTT    L   +    
Sbjct: 320 TSSKLIFETSDLVIGYEEPLSKPLNLKME-RGQKIALVGANGIGKTT---LLKSILGEIK 375

Query: 139 GLKVMLAAGDTFRSAAIDQ 157
            +   +  GD       +Q
Sbjct: 376 PISGSVEKGDYQHIGYFEQ 394


>gi|257889044|ref|ZP_05668697.1| ATP-dependent Clp protease [Enterococcus faecium 1,141,733]
 gi|257825110|gb|EEV52030.1| ATP-dependent Clp protease [Enterococcus faecium 1,141,733]
          Length = 527

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           + K    T  K+KE       +  +DD     E L  + + SD+G    +++ + L  + 
Sbjct: 360 IKKSIEETKQKIKETDQKEKITATIDDVAQSVERLTGIPV-SDMGANDIERL-KNLDKRL 417

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            +K +     +  V++ I +     S+             L VG  GVGKT +  +L+  
Sbjct: 418 KSKVIGQDEAVEMVAKAIRRNRAGFSEG-----DQPIGSFLFVGPTGVGKTELAKQLA-- 470

Query: 135 MSDAGLKVMLAAGD 148
           +   G +  +   D
Sbjct: 471 LDMFGNENAIIRLD 484


>gi|315500546|ref|YP_004089348.1| chromosome partitioning protein ParA [Asticcacaulis excentricus CB
           48]
 gi|315418558|gb|ADU15197.1| chromosome partitioning protein ParA [Asticcacaulis excentricus CB
           48]
          Length = 411

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           + ++L    +    D      V    G  GVGK+TV   L+  ++  G +V++   D+ 
Sbjct: 99  MRQVLGASPRRSPEDPPAIITVQNFKG--GVGKSTVTTHLAHYLAVQGYRVLVVDCDSQ 155


>gi|300768247|ref|ZP_07078152.1| capsular exopolysaccharide family protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308180921|ref|YP_003925049.1| capsular exopolysaccharide family protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|300494311|gb|EFK29474.1| capsular exopolysaccharide family protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308046412|gb|ADN98955.1| capsular exopolysaccharide family protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 235

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 4/123 (3%)

Query: 69  ELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV--GVNGVGKT 125
           +L  +       +Q   L     ++ + +  +    N+    +P   L++   + G GK+
Sbjct: 2   KLRRRVANMHTGIQLTTLTAPMSVVTEQVKTIRTNLNYAMVGKPLKTLMITSAIQGEGKS 61

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           TV   L+ + +  GL+V+L   D  R   I Q    +++       S   +D     Y  
Sbjct: 62  TVGSNLAVEYAKKGLQVLLVDADLRRPT-IHQTFAISNQRGVSSWLSGQLTDVNEAIYPV 120

Query: 186 FKQ 188
              
Sbjct: 121 LDH 123


>gi|225010890|ref|ZP_03701357.1| ATP-dependent metalloprotease FtsH [Flavobacteria bacterium
           MS024-3C]
 gi|225004937|gb|EEG42892.1| ATP-dependent metalloprotease FtsH [Flavobacteria bacterium
           MS024-3C]
          Length = 691

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 25/182 (13%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           T+   KDV+      +  E I   L    K +       P   L+VG  G GKT     L
Sbjct: 189 TRTSFKDVAGLEGAKEEIEEIVSFLKQPEK-YTSLGGKIPKGALLVGPPGTGKT----LL 243

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K ++        +   +                  +       S    L  +A +++ A
Sbjct: 244 AKAVAGEAKVPFFSLSGS---------------DFVEMFVGVGASRVRDLFKQAKEKSPA 288

Query: 192 KKVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
               +  ID  GR    + +          + ++L  +D    ++ + VL AT   + L 
Sbjct: 289 IIF-IDEIDAIGRARGKNNMTGSNDERENTLNQLLTEMDGFGTNTNVIVLAATNRADVLD 347

Query: 248 QV 249
           + 
Sbjct: 348 KA 349


>gi|222149582|ref|YP_002550539.1| adenylate sulfate kinase protein [Agrobacterium vitis S4]
 gi|221736564|gb|ACM37527.1| adenylate sulfate kinase protein [Agrobacterium vitis S4]
          Length = 209

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            + ++     ++ + L    +         P VI + G++G GK+TV   L  ++   G 
Sbjct: 7   TRTIVTSQQNIVVQQLQVRREARAIIKRQHPRVIWLTGLSGSGKSTVANALESQLHGQGY 66

Query: 141 KVMLAAGDTFRSA 153
              +  GD  R  
Sbjct: 67  HTYILDGDNVRHG 79


>gi|221104195|ref|XP_002153963.1| PREDICTED: similar to methylmalonic aciduria type A [Hydra
           magnipapillata]
          Length = 346

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 28/221 (12%)

Query: 60  VAVAQKIVEELLTKRYAK--------DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           +    ++ E+L+    A         + +     +    L+ K L  L K    +     
Sbjct: 11  LKTVDELFEQLVNGNRASLATTITLIESTRDNHKHHADNLLSKALSHLKKL--QESGKST 68

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAA-----IDQLKIWADR 164
             I + G  G GK+++I K  KK++  G KV + A D  + ++         ++   +  
Sbjct: 69  FRIGLTGAPGAGKSSLIEKFGKKLTSEGHKVAVLAIDPSSVKTGGSLLGDRTRMITLSHD 128

Query: 165 TSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
            +A    S        +A    EA    +A   D+++++T G   +   +   +   + V
Sbjct: 129 PNAYIRPSPTAGTLGGVARKTNEAIILCEAAGYDIILVETVGIGQSEVAVGDMVDMFVLV 188

Query: 222 L--------KRLDPHAPHSVLQVLDATTGQNALRQVEMFHA 254
           +        + +       V  VL      + L       +
Sbjct: 189 IPPASGDELQGIKKGIVEMVDLVLVNKADGDLLPAARRIQS 229


>gi|217076630|ref|YP_002334346.1| primosomal protein N' [Thermosipho africanus TCF52B]
 gi|217036483|gb|ACJ75005.1| primosomal protein N' [Thermosipho africanus TCF52B]
          Length = 723

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 15/104 (14%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSV 81
              + K K+ I  +  ++ +     +EL++LL   DI     + ++ +L  K       +
Sbjct: 152 KRLTEKQKKVIDYLFLNKIVS---YKELKELL---DIN----KDVILQLKRKEL-----I 196

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           +       ++   +L    +    +       +L+ GV G GKT
Sbjct: 197 EIYENIPEKIKKVVLNEEQEKVVEEIVKSKSKVLLHGVTGSGKT 240


>gi|160888200|ref|ZP_02069203.1| hypothetical protein BACUNI_00608 [Bacteroides uniformis ATCC 8492]
 gi|156862335|gb|EDO55766.1| hypothetical protein BACUNI_00608 [Bacteroides uniformis ATCC 8492]
          Length = 589

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 52/159 (32%), Gaps = 10/159 (6%)

Query: 114 ILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD---- 168
           +L+V   G GKT T+  K++ ++S            T+ + A D++K   +    D    
Sbjct: 23  VLLVACPGSGKTRTLTYKIAYELSKLNSNKQYIIAITYTNRAADEIKERIELLGIDTKQL 82

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           ++ +        +        +  K    II+        + L          +   D  
Sbjct: 83  WIGTIHSFCVEWILKPYHMYIEELKYGYTIINAHDTESYLTSLCVPYASTKPKITYWDCQ 142

Query: 229 APH-----SVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
             +      V++  ++   ++ +  ++ +         I
Sbjct: 143 CFYFTSRGLVVKCTNSQKKESVVSIIKSYFQNLKENKEI 181


>gi|152986636|ref|YP_001350793.1| cell division protein FtsH [Pseudomonas aeruginosa PA7]
 gi|296391578|ref|ZP_06881053.1| cell division protein FtsH [Pseudomonas aeruginosa PAb1]
 gi|150961794|gb|ABR83819.1| cell division protein FtsH [Pseudomonas aeruginosa PA7]
          Length = 642

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L  P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 164 EAKEEVSELVEFLRDPGKFQRLGGRIPRGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 219

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 220 TISGS---------------DFVEMFVGVGASRVRDMFDQAKKHAPCIIF-IDEIDAVGR 263

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 264 HRGAGLGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLD 309


>gi|71144631|gb|AAZ25104.1| parA family protein [Colwellia psychrerythraea 34H]
          Length = 264

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  +++ G +V+L   D   S +     I ++              +  
Sbjct: 14  GVGKTTTTIALAGILAEQGHRVLLIDTDPHASLSYY-FGIESEDLDLSVYELFTQVSSRE 72

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK---MIRVLKRLDPHAPHSVLQ 235
              +    +Q   +D+L   T G    +  L    G    + +V++++   +   VL 
Sbjct: 73  QILQTLCPSQYPNIDILPA-TMGLATLDRSLGNKGGMGLVLKKVVQKV-ADSYDYVLM 128


>gi|15678312|ref|NP_275427.1| ATP-dependent Clp protease regulatory subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621336|gb|AAB84790.1| ATP-dependent Clp protease regulatory subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 616

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           L +   +D      + ++   I K    +    +   S         G  GVGKT +  K
Sbjct: 286 LERVVGQD----HAVREIVNAIKKARSGVVGLSSGGQSKPKATFFFAGPTGVGKTFLAKK 341

Query: 131 LSKKM 135
           L++ +
Sbjct: 342 LAEYL 346


>gi|50510419|dbj|BAD32195.1| mKIAA0224 protein [Mus musculus]
          Length = 1224

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 21/118 (17%)

Query: 58  IGVAVAQKIVEELLTK-------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           +     QK  + +  K          K +  QR    +  +  ++L  +           
Sbjct: 501 VDYRTEQKFADHMKEKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRD--------- 551

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTS 166
             +++VVG  G GKTT   +L++ + + G       G T   R AA+   K  ++   
Sbjct: 552 NSIVIVVGETGSGKTT---QLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMG 606


>gi|21225789|ref|NP_631568.1| chaperone [Streptomyces coelicolor A3(2)]
 gi|14495033|emb|CAC42150.1| putative chaperone [Streptomyces coelicolor A3(2)]
          Length = 837

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 15/140 (10%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            L  + +A+ V     +  VS  + +    +  P            L +G  GVGKT + 
Sbjct: 529 RLEEEMHARIVGQDEAVTAVSRAVRRNRAGMGDP-----DRPVGSFLFLGPTGVGKTELA 583

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L++ +   G +  +   D          +     T A  V +  G      A +  ++
Sbjct: 584 KTLAELL--FGEENRMIRFDMS--------EFQEKHTVARLVGAPPGYVGYEEAGQLTEK 633

Query: 189 AQAKKVDVLIIDTAGRLHNN 208
            + +   V++ D   + H +
Sbjct: 634 VRRQPYSVVLFDEVEKAHPD 653


>gi|86138022|ref|ZP_01056597.1| ATP-dependent Zn protease [Roseobacter sp. MED193]
 gi|85825049|gb|EAQ45249.1| ATP-dependent Zn protease [Roseobacter sp. MED193]
          Length = 703

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 12/110 (10%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS--KPF 103
           RE LE               ++E+  T    + ++  + L   S  I ++   +   +  
Sbjct: 232 REPLEMA--------RAVSLLIEQNHTSANPEALNQVKGLGPTSSPIKQLAQDMRAWRAN 283

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             ++S  P  +L+ G  G GKT    KL++  +  G  +  +  D  R  
Sbjct: 284 ELEWSEIPRGVLLSGPPGTGKTFTASKLAE--AVGGHFIATSYADWQREG 331


>gi|15599945|ref|NP_253439.1| cell division protein FtsH [Pseudomonas aeruginosa PAO1]
 gi|107103848|ref|ZP_01367766.1| hypothetical protein PaerPA_01004919 [Pseudomonas aeruginosa PACS2]
 gi|116052898|ref|YP_793215.1| cell division protein FtsH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893846|ref|YP_002442715.1| cell division protein FtsH [Pseudomonas aeruginosa LESB58]
 gi|254238513|ref|ZP_04931836.1| cell division protein FtsH [Pseudomonas aeruginosa C3719]
 gi|254244347|ref|ZP_04937669.1| cell division protein FtsH [Pseudomonas aeruginosa 2192]
 gi|313109732|ref|ZP_07795672.1| cell division protein FtsH [Pseudomonas aeruginosa 39016]
 gi|9951013|gb|AAG08137.1|AE004888_12 cell division protein FtsH [Pseudomonas aeruginosa PAO1]
 gi|115588119|gb|ABJ14134.1| cell division protein FtsH [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170444|gb|EAZ55955.1| cell division protein FtsH [Pseudomonas aeruginosa C3719]
 gi|126197725|gb|EAZ61788.1| cell division protein FtsH [Pseudomonas aeruginosa 2192]
 gi|218774074|emb|CAW29890.1| cell division protein FtsH [Pseudomonas aeruginosa LESB58]
 gi|310882174|gb|EFQ40768.1| cell division protein FtsH [Pseudomonas aeruginosa 39016]
          Length = 639

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L  P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 161 EAKEEVSELVEFLRDPGKFQRLGGRIPRGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 216

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 217 TISGS---------------DFVEMFVGVGASRVRDMFDQAKKHAPCIIF-IDEIDAVGR 260

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 261 HRGAGLGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLD 306


>gi|229591512|ref|YP_002873631.1| general secretion pathway protein [Pseudomonas fluorescens SBW25]
 gi|229363378|emb|CAY50525.1| general secretion pathway protein [Pseudomonas fluorescens SBW25]
          Length = 576

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            +   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 319 LEVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 376


>gi|226305174|ref|YP_002765132.1| ABC transporter ATP-binding protein [Rhodococcus erythropolis PR4]
 gi|226184289|dbj|BAH32393.1| putative ABC transporter ATP-binding protein [Rhodococcus
           erythropolis PR4]
          Length = 345

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-SAAIDQL 158
           V  V+G NG GKTT +  L+  +   G +  +   D  R   A+  L
Sbjct: 47  VFGVLGPNGAGKTTTVRMLATLLRPDGGEARIFGHDVSREPTAVRSL 93


>gi|254471792|ref|ZP_05085193.1| LAO/AO transport system ATPase [Pseudovibrio sp. JE062]
 gi|211958994|gb|EEA94193.1| LAO/AO transport system ATPase [Pseudovibrio sp. JE062]
          Length = 332

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 23/161 (14%)

Query: 67  VEELLTK-------RYAKDVSVQRVLYDVSELIHK-MLMPLSKPFNWDFSHRPHVILVVG 118
           +++L  +         A+ +++            + +L  +       F      I V G
Sbjct: 12  IDDLAERLLNGQRAALARGITLVESKKPAHREQAEALLTKVMGSTGNAFR-----IGVTG 66

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAA--------IDQLKIWADRTSAD 168
           V GVGK+T I      ++ AG KV + A D  + R+          + QL +  +     
Sbjct: 67  VPGVGKSTTIDTFGSNLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMAQLAVDRNAYIRP 126

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
              +      AA   E+    +A   DV++++T G   + +
Sbjct: 127 SPSAGTLGGVAAKTRESMLLCEAAGFDVILVETVGIGQSET 167


>gi|225552000|ref|ZP_03772940.1| ATP-dependent protease La [Borrelia sp. SV1]
 gi|225370998|gb|EEH00428.1| ATP-dependent protease La [Borrelia sp. SV1]
          Length = 806

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 16/128 (12%)

Query: 26  LKLKEGITDIISSRRLDDGVREELED-LLIR-SDIGVAVAQKIVEELLTKRYAKDVSVQR 83
            KLK  +  +       + V +ELE   L+  S     V +  +E L+T+   +D+ +  
Sbjct: 283 EKLKTKLKALELKGEPLEVVEKELEKFSLLETSSAEYIVVRNYLE-LITELPWRDLKINF 341

Query: 84  VLYDVSE-------------LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
              D+ +              +   ++          + +  +IL+VG  GVGKT++   
Sbjct: 342 DKLDLQKSKKILDKTHYGMNEVKDRIIEYISVLKLRKTQKGAIILLVGPPGVGKTSIGAA 401

Query: 131 LSKKMSDA 138
           ++K +   
Sbjct: 402 IAKVLRTK 409


>gi|196003024|ref|XP_002111379.1| hypothetical protein TRIADDRAFT_24566 [Trichoplax adhaerens]
 gi|190585278|gb|EDV25346.1| hypothetical protein TRIADDRAFT_24566 [Trichoplax adhaerens]
          Length = 426

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 23/46 (50%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
              ++P VI+++G+   GKT +  KL++  +   +   +     +R
Sbjct: 5   SLCNKPTVIVMMGLPARGKTYLARKLARYFNWINISTKVFCIGEYR 50


>gi|170760247|ref|YP_001786086.1| ABC transporter, ATP-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407236|gb|ACA55647.1| ABC transporter, ATP-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 517

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L   +    +
Sbjct: 320 PENIIFNASNLIIGYNKPLSKPLNLKM-KRGQKIAITGANGIGKTTLIKTLLGLLKP--I 376

Query: 141 KVMLAAGDTFRSAAIDQ 157
              +   D  +    +Q
Sbjct: 377 NGEVTLSDYKKIGYFEQ 393


>gi|19112089|ref|NP_595297.1| AAA family ATPase, unknown biological role [Schizosaccharomyces
           pombe 972h-]
 gi|74582135|sp|O42906|NPA3_SCHPO RecName: Full=GTPase npa3
 gi|2959376|emb|CAA17930.1| AAA family ATPase, unknown biological role [Schizosaccharomyces
           pombe]
          Length = 367

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            D   +P  I+VVG+ G GKTT + +L+  +        +   D
Sbjct: 2   TDKEKKPCAIIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLD 45


>gi|89897408|ref|YP_520895.1| hypothetical protein DSY4662 [Desulfitobacterium hafniense Y51]
 gi|89336856|dbj|BAE86451.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 270

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           P   +      V+ V G  G GKTTV  +L+K M+D    V L   D
Sbjct: 17  PVPEEPEQDVQVLAVWGSPGSGKTTVSVRLAKYMADQKKNVALLLCD 63


>gi|16945728|dbj|BAB72059.1| AcrV [Streptomyces galilaeus]
          Length = 345

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           V+G NG GKTT I  L+  ++  G    +   D  R A
Sbjct: 58  VLGPNGAGKTTTIRMLATLLTPDGGTARVLGHDVVREA 95


>gi|109900018|ref|YP_663273.1| twitching motility protein [Pseudoalteromonas atlantica T6c]
 gi|109702299|gb|ABG42219.1| pilus retraction ATPase PilT [Pseudoalteromonas atlantica T6c]
          Length = 347

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           +D  R+E E+ L  +D    V  K +       + ++     VL  +   I  +    + 
Sbjct: 56  NDNQRKEYEENL-ETDFSFEV--KDLSRFRVNAFVQNRGAAAVLRTIPSKILSLDDLGAP 112

Query: 102 PFNWDFSHRPHVILVV-GVNGVGKTTVIG 129
               D  ++P  I++V G  G GK+T + 
Sbjct: 113 QIFKDIINQPTGIVLVTGATGSGKSTTLA 141


>gi|332846399|ref|XP_511101.3| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16 [Pan troglodytes]
          Length = 1227

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 21/118 (17%)

Query: 58  IGVAVAQKIVEELLTK-------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           +     QK  + +  K          K +  QR    +  +  ++L  +           
Sbjct: 497 VDYRTEQKFADHMKRKSEASSEFAKKKSIQEQRQYLPIFAVQQELLTIIRD--------- 547

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTS 166
             +++VVG  G GKTT   +L++ + + G       G T   R AA+   K  ++   
Sbjct: 548 NSIVIVVGETGSGKTT---QLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMG 602


>gi|311258197|ref|XP_003127514.1| PREDICTED: NACHT, LRR and PYD domains-containing protein 2-like
           [Sus scrofa]
          Length = 1178

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 15/52 (28%)

Query: 111 PHVILVVGVNGVGKTTVIGKL---------------SKKMSDAGLKVMLAAG 147
           PH +++ G  GVGKTTV  KL               +  +S   L       
Sbjct: 311 PHTVVLHGPAGVGKTTVAKKLMLDWTQDGLAQAVHSAFYLSCKDLSHRGTCT 362


>gi|308271763|emb|CBX28371.1| hypothetical protein N47_G36950 [uncultured Desulfobacterium sp.]
          Length = 664

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I VVG  G GKTT I  L++        +++   D
Sbjct: 459 IAVVGPTGTGKTTFINLLARFYEPDSGIILVNGTD 493


>gi|299117006|emb|CBN73777.1| putative; katanin like protein [Ectocarpus siliculosus]
          Length = 778

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 64  QKIVEELLTKRYAKDVSVQRV----LYDVSELIHK-MLMPLSKPFNWDFSHRP-HVILVV 117
           ++++E L      + VSV       L D  +L+ + +++PL  P  +    RP   +L+ 
Sbjct: 433 RELIESLERDIVERGVSVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLMF 492

Query: 118 GVNGVGKTTVIGK 130
           G  G GK T++ K
Sbjct: 493 GPPGTGK-TMLAK 504


>gi|270290943|ref|ZP_06197166.1| competence protein ComGA [Pediococcus acidilactici 7_4]
 gi|270280339|gb|EFA26174.1| competence protein ComGA [Pediococcus acidilactici 7_4]
          Length = 320

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           R +Y++ +   ++L P+S       +    +I+  G  G GKTT+I +++KK+S  G K+
Sbjct: 107 RFIYELKQQ-REILDPVSLQDIEAAARLRGMIVFSGPTGSGKTTLIYEIAKKLS--GSKL 163

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +++  D       + L++  +  S    
Sbjct: 164 VMSIEDPVEIQENNFLQLQVNEKSGMTY 191


>gi|260663275|ref|ZP_05864166.1| multidrug ABC transporter ATP-binding and permease component
           [Lactobacillus fermentum 28-3-CHN]
 gi|260552127|gb|EEX25179.1| multidrug ABC transporter ATP-binding and permease component
           [Lactobacillus fermentum 28-3-CHN]
          Length = 610

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           PL + FN       H++ +VG  G GKTT+I  L +     G  + L   DT
Sbjct: 383 PLIQDFNLKAEQ-NHMVAIVGPTGAGKTTIINLLERFYDVKGGHIYLDGRDT 433


>gi|258511180|ref|YP_003184614.1| Cobyrinic acid ac-diamide synthase [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477906|gb|ACV58225.1| Cobyrinic acid ac-diamide synthase [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 349

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 107 FSHRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
              R  VI V GV  GVGKTT+   ++  +   G +V+LA  D
Sbjct: 110 APRRAKVICVTGVKGGVGKTTLSALMASALMVKGRRVVLAELD 152


>gi|256393581|ref|YP_003115145.1| ABC transporter [Catenulispora acidiphila DSM 44928]
 gi|256359807|gb|ACU73304.1| ABC transporter related [Catenulispora acidiphila DSM 44928]
          Length = 665

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---------FRSAAIDQ 157
            R  V+  VG NG  KTT+   L++       ++     D+          R A IDQ
Sbjct: 420 KRGQVVAFVGENGAAKTTMAKLLARLYLPDSGRIRWDGHDSAAMDVETLRSRIAFIDQ 477


>gi|229490628|ref|ZP_04384466.1| daunorubicin resistance ATP-binding protein DrrA [Rhodococcus
           erythropolis SK121]
 gi|229322448|gb|EEN88231.1| daunorubicin resistance ATP-binding protein DrrA [Rhodococcus
           erythropolis SK121]
          Length = 335

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-SAAIDQL 158
           V  V+G NG GKTT +  L+  +   G +  +   D  R   A+  L
Sbjct: 37  VFGVLGPNGAGKTTTVRMLATLLRPDGGEARIFGHDVSREPTAVRSL 83


>gi|194303223|ref|YP_002014637.1| gp26 [Mycobacterium phage Phaedrus]
 gi|194150955|gb|ACF33990.1| gp26 [Mycobacterium phage Phaedrus]
          Length = 1914

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELE------DLLIRSDI 58
           K+ +ES  ++ +L  G      +    IT I+ +  LD  + E +E      + L+  +I
Sbjct: 349 KLTAESSDFLPRLADGLTKVGERFNNWITKIVDNGDLDRWINEGIEAVGHFGNALL--NI 406

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           G     KI+  + TK    D    + L + +E +   L         
Sbjct: 407 G-----KILTSI-TKAAGGDGGFLKWLDEATEKLATFLASDEGQQKL 447


>gi|168178113|ref|ZP_02612777.1| ABC transporter, ATP-binding protein [Clostridium botulinum NCTC
           2916]
 gi|182670590|gb|EDT82564.1| ABC transporter, ATP-binding protein [Clostridium botulinum NCTC
           2916]
          Length = 517

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L   +    +
Sbjct: 320 PENIIFNASNLIIGYNKPLSKPLNLKM-KRGQKIAITGANGIGKTTLIKTLLGLLKP--I 376

Query: 141 KVMLAAGDTFRSAAIDQ 157
              +   D  +    +Q
Sbjct: 377 NGEVTLSDYKKIGYFEQ 393


>gi|153938210|ref|YP_001390081.1| ABC transporter, ATP-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|152934106|gb|ABS39604.1| ABC transporter, ATP-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|295318174|gb|ADF98551.1| ABC transporter, ATP-binding protein [Clostridium botulinum F str.
           230613]
          Length = 517

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L   +    +
Sbjct: 320 PENIIFNASNLIIGYNKPLSKPLNLKM-KRGQKIAITGANGIGKTTLIKTLLGLLKP--I 376

Query: 141 KVMLAAGDTFRSAAIDQ 157
              +   D  +    +Q
Sbjct: 377 NGEVTLSDYKKIGYFEQ 393


>gi|152990824|ref|YP_001356546.1| ATP-dependent zinc metalloproteinase [Nitratiruptor sp. SB155-2]
 gi|151422685|dbj|BAF70189.1| ATP-dependent zinc metalloproteinase [Nitratiruptor sp. SB155-2]
          Length = 552

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 22/167 (13%)

Query: 85  LYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +V E + +++  L  P  +       P  +L+VG  GVGKT     ++K ++      
Sbjct: 159 IDEVKEELEEIIDFLKDPKKYTSFGVRMPKGVLLVGPPGVGKT----LIAKAVAGEAGVP 214

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
                 +    A  Q+ +         +  +    A ++ +          +D   ID  
Sbjct: 215 FFYQSGS----AFVQIYVGMGAKRVRELFKKAKEMAPSIVF----------IDE--IDAV 258

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           G+             + ++L  +D     S + V+ AT     L + 
Sbjct: 259 GKARGGMRNDEREATLNQLLTEMDGFEASSGVIVIGATNKIEVLDEA 305


>gi|114327331|ref|YP_744488.1| cobyrinic acid a,c-diamide synthase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315505|gb|ABI61565.1| cobyrinic acid a,c-diamide synthase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 464

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 38/184 (20%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAG--DTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           G GKTTV   L+  +   G++V +A    D    A        A+         +  +  
Sbjct: 38  GSGKTTVTLALALALRQRGVRVRIAKNGPDYIDPA------FHAEAVGLPCFNLDSWAMP 91

Query: 179 AALAYEAFKQAQAKKVDVLIIDTA-----------GRLHNNSILMAGIGKMIRVLKRLDP 227
            A A +A     A + D+++I+ +           GR+   S L    G           
Sbjct: 92  PA-ALDAIWTELAAETDLILIEASMGLFDGGGSQPGRMGAASDLADRFG----------- 139

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHA----VAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
                VL VLD +    +   V    A         G+I   +      GG+   +    
Sbjct: 140 ---VPVLLVLDVSGQSQSAAAVARGFATHDPAVHLAGVIANNLASDRHAGGVAHAMQRAG 196

Query: 284 IPVY 287
           +P+ 
Sbjct: 197 LPLL 200


>gi|109521868|ref|YP_655305.1| gp28 [Mycobacterium phage Pipefish]
 gi|88910599|gb|ABD58525.1| gp28 [Mycobacterium phage Pipefish]
          Length = 1910

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELE------DLLIRSDI 58
           K+ +ES  ++ +L  G      +    IT I+ +  LD  + E +E      + L+  +I
Sbjct: 349 KLTAESSDFLPRLADGLTKVGERFNNWITKIVDNGDLDRWINEGIEAVGHFGNALL--NI 406

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
           G     KI+  + TK    D    + L + +E +   L         
Sbjct: 407 G-----KILTSI-TKAAGGDGGFLKWLDEATEKLATFLASDEGQQKL 447


>gi|120403748|ref|YP_953577.1| arginine/ornithine transport system ATPase [Mycobacterium
           vanbaalenii PYR-1]
 gi|119956566|gb|ABM13571.1| methylmalonyl-CoA mutase metallochaperone MeaB [Mycobacterium
           vanbaalenii PYR-1]
          Length = 331

 Score = 37.1 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 11/117 (9%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAA----- 154
               +     HV  + GV GVGK+T I  L   + + G +V + A D  + R+       
Sbjct: 44  ELTPEAGSAVHV-GITGVPGVGKSTTIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGD 102

Query: 155 ---IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
              + +L +  D        S      A    E     +A   DV++++T G   + 
Sbjct: 103 KTRMAKLAVHPDAYIRPSPTSGTLGGVAKATRETIVLLEAAGYDVVLVETVGVGQSE 159


>gi|330956193|gb|EGH56453.1| general secretory pathway protein E [Pseudomonas syringae Cit 7]
          Length = 73

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVI 128
            D   RPH IL+V G  G GKTT +
Sbjct: 43  LDVLERPHGILLVTGPTGSGKTTTL 67


>gi|317121897|ref|YP_004101900.1| microtubule-severing ATPase [Thermaerobacter marianensis DSM 12885]
 gi|315591877|gb|ADU51173.1| Microtubule-severing ATPase [Thermaerobacter marianensis DSM 12885]
          Length = 558

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 29/172 (16%)

Query: 88  VSELIHKMLMPLSKPFNWD-FSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
             + + + L  L +P     F  RP   IL+ G  G GKT  + K +   +D+       
Sbjct: 76  AKQELKEALEFLRRPKEAQRFGIRPIKGILLAGPPGTGKTL-LAKAAATYTDSAFLATSG 134

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD--VLIIDT-- 201
           +                     +            +  E  + A+ +     +L ID   
Sbjct: 135 SA------------------FVEVYAGVGAQRVREVFAEVRRLARRQGKQSAILFIDEIE 176

Query: 202 --AGRLHNNSILMAGIGKMIRVLKRLDPHAPHS--VLQVLDATTGQNALRQV 249
             AG+   ++  +     + ++L  LD  A      + V+ AT   + + + 
Sbjct: 177 VLAGKRGRHTSHLEYDQTLNQLLVELDGIAADDDVQVLVMAATNRPDLMDEA 228


>gi|296536160|ref|ZP_06898288.1| ATP-dependent Clp protease ATP-binding subunit [Roseomonas
           cervicalis ATCC 49957]
 gi|296263531|gb|EFH10028.1| ATP-dependent Clp protease ATP-binding subunit [Roseomonas
           cervicalis ATCC 49957]
          Length = 418

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 43  DGVREELEDLLIRS-DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           D +REE +  L++S D GV   ++I + L      ++   ++VL       +K L    K
Sbjct: 44  DIIREEHKTHLVKSRD-GVPTPREICKVLDDYVIGQE-HAKKVLSVAVHNHYKRLAHGGK 101

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
               + +     I++VG  G GKT +   L++ +
Sbjct: 102 TGEVEIAKSN--IMLVGPTGSGKTLLAQTLARIL 133


>gi|295694781|ref|YP_003588019.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912]
 gi|295410383|gb|ADG04875.1| ATP-dependent metalloprotease FtsH [Bacillus tusciae DSM 2912]
          Length = 648

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           A+   ++   K    DV+         E + + L    + F+   +  P  IL+VG  G 
Sbjct: 148 AKMFTDD-KKKVTFNDVAGADEEKAELEEVVEFLKD-PRRFSSLGARIPKGILLVGPPGT 205

Query: 123 GKT 125
           GKT
Sbjct: 206 GKT 208


>gi|256786668|ref|ZP_05525099.1| ABC-transporter ATP-binding component [Streptomyces lividans TK24]
 gi|289770563|ref|ZP_06529941.1| ABC-transporter ATP-binding component [Streptomyces lividans TK24]
 gi|289700762|gb|EFD68191.1| ABC-transporter ATP-binding component [Streptomyces lividans TK24]
          Length = 346

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V  V+G NG GKTT +  L+  +   G    +   D    A
Sbjct: 36  TVYGVLGPNGAGKTTTVKMLATLLRPDGGHARVFGHDVVHEA 77


>gi|254798632|ref|YP_003058284.1| cell division protein [Parachlorella kessleri]
 gi|229915580|gb|ACQ90923.1| cell division protein [Parachlorella kessleri]
          Length = 1481

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           D+ ++E++E    + D G     +I+    +K+  ++++  + L      I   L    K
Sbjct: 757 DENIKEQIELATGQRDKGF----RIIS--KSKKKFQNIAGIKTLLPEIAEIVWFLRNSGK 810

Query: 102 PFNWDFSHRPHVILVVGVNGVGKT 125
            F+    + P  +L++G  G GKT
Sbjct: 811 KFSLS-KNVPRGLLLIGPPGTGKT 833


>gi|240851213|ref|YP_002972616.1| cell division protein FtsH [Bartonella grahamii as4aup]
 gi|240268336|gb|ACS51924.1| cell division protein FtsH [Bartonella grahamii as4aup]
          Length = 716

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 65  KIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +++ E   +   KDV+ V+    D+ E++  +  P  + F       P  +L+VG  G G
Sbjct: 144 RLLNEAQGRVTFKDVAGVEEAKQDLQEIVEFLREP--QKFQRLGGRIPRGVLLVGPPGTG 201

Query: 124 KT 125
           KT
Sbjct: 202 KT 203


>gi|229524539|ref|ZP_04413944.1| adenylylsulfate kinase [Vibrio cholerae bv. albensis VL426]
 gi|229338120|gb|EEO03137.1| adenylylsulfate kinase [Vibrio cholerae bv. albensis VL426]
          Length = 215

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            RP V+   G++G GK+TV G L  +++  G    L  GD  R  
Sbjct: 37  QRPAVLWFTGLSGAGKSTVAGALENRLAALGYHTYLLDGDNVRHG 81


>gi|237794035|ref|YP_002861587.1| ABC transporter, ATP-binding protein [Clostridium botulinum Ba4
           str. 657]
 gi|229260521|gb|ACQ51554.1| ABC transporter, ATP-binding protein [Clostridium botulinum Ba4
           str. 657]
          Length = 517

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L   +    +
Sbjct: 320 PENIIFNASNLIIGYNKPLSKPLNLKM-KRGQKIAITGANGIGKTTLIKTLLGLLKP--I 376

Query: 141 KVMLAAGDTFRSAAIDQ 157
              +   D  +    +Q
Sbjct: 377 NGEVTLSDYKKIGYFEQ 393


>gi|212224056|ref|YP_002307292.1| Hypothetical arsA [Thermococcus onnurineus NA1]
 gi|212009013|gb|ACJ16395.1| Hypothetical arsA [Thermococcus onnurineus NA1]
          Length = 330

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            I V+G  GVGKTT    L+  ++  G K ++ + D
Sbjct: 13  TIFVIGKGGVGKTTTSASLAVALAKKGYKTLIISLD 48


>gi|254424470|ref|ZP_05038188.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
 gi|196191959|gb|EDX86923.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp.
           PCC 7335]
          Length = 630

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 25/170 (14%)

Query: 85  LYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +  E + +++  L KP  F    +  P  +L+VG  G GKT     L+K ++      
Sbjct: 179 IEEAKEELQEVVTFLKKPERFTAIGARIPKGVLLVGPPGTGKT----LLAKAIAGEAGTP 234

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
             +   +                  +       S    L  +A + A      +  ID  
Sbjct: 235 FFSISGS---------------EFVEMFVGVGASRVRDLFKKAKENAPCIIF-IDEIDAV 278

Query: 203 GRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           GR                + ++L  +D    ++ + V+ AT   + L   
Sbjct: 279 GRSRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADVLDSA 328


>gi|168229323|ref|ZP_02654381.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194470872|ref|ZP_03076856.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194457236|gb|EDX46075.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205335929|gb|EDZ22693.1| arsenical pump-driving ATPase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 586

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 9/129 (6%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L  LS   +   S    +I+++G  GVGKTT+   ++ +++  G  V L+  D    AA 
Sbjct: 311 LPSLSSLIDGFASQGHGLIMLMGKGGVGKTTLAAAIAVELARRGYPVHLSTSD---PAAH 367

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
               +            +  ++      +   +          +D  GR      L +  
Sbjct: 368 LTDTLDGSFDGLSVSRIDPQAETERYRQQVMAEQGKN------LDEQGRAVLEEDLRSPC 421

Query: 216 GKMIRVLKR 224
            + I V + 
Sbjct: 422 TEEIAVFQA 430


>gi|114764004|ref|ZP_01443245.1| arginine/ornithine transport system ATPase [Pelagibaca bermudensis
           HTCC2601]
 gi|114543596|gb|EAU46610.1| arginine/ornithine transport system ATPase [Roseovarius sp.
           HTCC2601]
          Length = 329

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 74/218 (33%), Gaps = 30/218 (13%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNG---VG 123
           +E+L  +  A +         + E         ++          +V L VG++G   VG
Sbjct: 3   IEDLAERILAGERRALARAITLVESGRADHRAQARALIERLHGHENVALRVGLSGTPGVG 62

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAI-----DQLKIWADRTSADFVCSEIGS 176
           K+T I      ++  GLKV + A D  + RS         +++  +   +A    S   S
Sbjct: 63  KSTFIEAFGMMLTAQGLKVAVLAVDPSSARSGGSILGDKTRMERLSRDRNAFIRPSPSQS 122

Query: 177 DAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
               +A    EA    +A   DV++I+T G   + +               +        
Sbjct: 123 HLGGVARRTREAIDLCEAAGFDVILIETVGVGQSET---------------VVAEMSDLF 167

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
           L +L    G             A    +++ K DG  +
Sbjct: 168 LLLLAPAGGDELQGVKRGIMETADI--ILINKADGDLK 203


>gi|325845871|ref|ZP_08169069.1| arsenite-transporting ATPase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481777|gb|EGC84809.1| arsenite-transporting ATPase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 580

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI  +G  GVGKTTV   ++  +S  G KV L   D       D LK          + 
Sbjct: 326 KVIFTMGKGGVGKTTVAAAIALGLSKKGKKVHLTTTD-----PADHLKYTIKENENLSIS 380

Query: 172 S-EIGSDAAALAYEAFKQAQAKKVD 195
             +   +      E  ++A+    D
Sbjct: 381 HIDEKLELEKYRKEVLQKAKETMSD 405


>gi|320450651|ref|YP_004202747.1| ATPase [Thermus scotoductus SA-01]
 gi|320150820|gb|ADW22198.1| ATPase AAA-2 [Thermus scotoductus SA-01]
          Length = 453

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           E L  +   +D +V+ V+  +            K        +P  +++ G  G GKT
Sbjct: 163 EALKRRVIGQDHAVEAVVRGLK----------RKAAGLSRKEKPFSVMLAGPTGTGKT 210


>gi|304385210|ref|ZP_07367555.1| competence protein ComGA [Pediococcus acidilactici DSM 20284]
 gi|304328417|gb|EFL95638.1| competence protein ComGA [Pediococcus acidilactici DSM 20284]
          Length = 320

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           R +Y++ +   ++L P+S       +    +I+  G  G GKTT+I +++KK+S  G K+
Sbjct: 107 RFIYELKQQ-REILDPVSLQDIEAAARLRGMIVFSGPTGSGKTTLIYEIAKKLS--GSKL 163

Query: 143 MLAAGDTFRSAAIDQLKIWADRT-----------------SADFVCSEIGSDAAALAYEA 185
           +++  D       + L++  +                       +     S  A +A +A
Sbjct: 164 VMSIEDPVEIQENNFLQLQVNEKSGMTYQALLKSGLRNRPDIFIIGEIRDSKTAEIAVQA 223

Query: 186 FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                     +    T G       L      +   L  
Sbjct: 224 ALSGHLVLTTLHCKSTEGVWDRLLELGVQEDYLKEALTA 262


>gi|262367194|gb|ACY63751.1| cell division protein [Yersinia pestis D182038]
          Length = 355

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 122 EAKEEVSELVDYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 177

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 178 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 221

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 222 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 267


>gi|254556932|ref|YP_003063349.1| exopolysaccharide biosynthesis protein; chain length determinator
           [Lactobacillus plantarum JDM1]
 gi|254045859|gb|ACT62652.1| exopolysaccharide biosynthesis protein; chain length determinator
           [Lactobacillus plantarum JDM1]
          Length = 235

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 4/123 (3%)

Query: 69  ELLTKRYAKDVSVQ-RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV--GVNGVGKT 125
           +L  +       +Q   L     ++ + +  +    N+    +P   L++   + G GK+
Sbjct: 2   KLRRRVANMHTGIQLTTLTAPMSVVTEQVKTIRTNLNYAMVGKPLKTLMITSAIQGEGKS 61

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEA 185
           TV   L+ + +  GL+V+L   D  R   I Q    +++       S   +D     Y  
Sbjct: 62  TVGSNLAVEYAKKGLQVLLVDADLRRPT-IHQTFAISNQRGVSSWLSGQLTDVNEAIYPV 120

Query: 186 FKQ 188
              
Sbjct: 121 LDH 123


>gi|227495987|ref|ZP_03926298.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Actinomyces urogenitalis DSM 15434]
 gi|226834475|gb|EEH66858.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Actinomyces urogenitalis DSM 15434]
          Length = 552

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 51/160 (31%), Gaps = 11/160 (6%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS-ADFVCSEI 174
           +VG NG GKTT+   L+ +    G    +A  D        + +          ++  + 
Sbjct: 32  LVGRNGAGKTTMTKLLAAQSVAQGTSRTVADADERHGLEAVEYEGTISCNGSVGYLPQDT 91

Query: 175 G-SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
              D   +A +    A+     +  I  A    + +   A    + R   RLD       
Sbjct: 92  KVGDLTEIARDRILSARGIDALLARIRKAEEKISTTSGDAQAKALDR-YTRLDHE----- 145

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGG 273
                   G  A  +     A  G    ++ +  GT  GG
Sbjct: 146 ---FTMAGGYAAASEAARISAALGLPDRVLDQEIGTLSGG 182


>gi|170032652|ref|XP_001844194.1| XPA-binding protein 1 [Culex quinquefasciatus]
 gi|167873024|gb|EDS36407.1| XPA-binding protein 1 [Culex quinquefasciatus]
          Length = 376

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
               +P  ++V+G+ G GKTT + KL+ +         L   D
Sbjct: 21  SAKRKPICMIVLGMAGSGKTTFVRKLA-QYKHDEYNPYLVNLD 62


>gi|149192459|ref|ZP_01870652.1| cell division protein FtsH [Vibrio shilonii AK1]
 gi|148833710|gb|EDL50754.1| cell division protein FtsH [Vibrio shilonii AK1]
          Length = 601

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 101 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 154

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 155 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 198

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 199 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 247


>gi|148227244|ref|NP_001079231.1| DNA2-like helicase [Xenopus laevis]
 gi|82105075|sp|Q8QHA5|DNA2L_XENLA RecName: Full=DNA2-like helicase; AltName: Full=DNA replication
           ATP-dependent helicase-like homolog
 gi|18845092|gb|AAL79550.1|AF474372_1 helicase [Xenopus laevis]
          Length = 1053

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSH---RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           D  +++  +L  L+KP               L+VG+ G GKTT I  L + +   G  V+
Sbjct: 615 DAKDIVASILRGLNKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFSVL 674

Query: 144 LAA 146
           L +
Sbjct: 675 LTS 677


>gi|116621421|ref|YP_823577.1| ATPase central domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224583|gb|ABJ83292.1| AAA ATPase, central domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 482

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 15/90 (16%)

Query: 63  AQKIVEELLTKRYAKDVSVQ-------RVLYDVSELIHKMLMPLSKPFNWD-----FSHR 110
               ++ L ++    +V +Q       + L  V ++I  +   ++ PF  D        +
Sbjct: 205 TDTFMDYLRSQDMTSNVELQEVPPVNWKDLKGVDDVIRALEAKIALPFENDALAGELGLK 264

Query: 111 PH-VILVVGVNGVGKTTVIGK-LSKKMSDA 138
           P   +L+ G  G GKTT IG+ L+ ++   
Sbjct: 265 PKRGVLLAGPPGTGKTT-IGRALAHRLKSK 293


>gi|326943526|gb|AEA19419.1| hypothetical protein CT43_P281076 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 496

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 19/140 (13%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            N      P  I + G  G GKT +   ++K+  +   +V++    T  +     +    
Sbjct: 198 INLRQEGGPSYIAIEGAAGTGKTLLAYDIAKEYINNSKRVLIIHCGTVNAGHRKLMFYDW 257

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN---SILMAGIGKMI 219
           + T   +  S   ++                 D+++ID   R+  +    IL       +
Sbjct: 258 EVTGIRYYESYTFNE----------------YDLIVIDEVQRIRKDQLEEILQRINDNNV 301

Query: 220 RVLKRLDPHAPHSVLQVLDA 239
           + +   DP+   +  +V + 
Sbjct: 302 KCIFSYDPNQCLASWEVSNN 321


>gi|326335237|ref|ZP_08201432.1| ATP-dependent metalloprotease FtsH [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692508|gb|EGD34452.1| ATP-dependent metalloprotease FtsH [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 639

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 25/182 (13%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            K   +DV+      +  + I + L    K +       P   L+VG  G GKT     L
Sbjct: 189 KKITFQDVAGLEGAKEEVQEIVEFLKNPEK-YTSLGGKIPKGALLVGPPGTGKT----LL 243

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K ++        +   +                  +       S    L  +A +++ A
Sbjct: 244 AKAVAGEAKVPFFSLSGS---------------DFVEMFVGVGASRVRDLFRQAKEKSPA 288

Query: 192 KKVDVLIIDTAGRLHNNSILMA----GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
               +  ID  GR    + L          + ++L  +D     + + VL AT   + L 
Sbjct: 289 IIF-IDEIDAIGRARGKNNLTNANDERENTLNQLLTEMDGFGTTTNVIVLAATNRADILD 347

Query: 248 QV 249
           + 
Sbjct: 348 KA 349


>gi|325281455|ref|YP_004253997.1| putative ABC transporter ATP-binding protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324313264|gb|ADY33817.1| putative ABC transporter ATP-binding protein [Odoribacter
           splanchnicus DSM 20712]
          Length = 279

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 13/149 (8%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-QLKIWADRTSADF 169
           P V +++G+NG GKTT+            +   +   D  R       +KI  D  + DF
Sbjct: 26  PDVNILIGINGSGKTTLF----------NIIDSIMMADVKRLRIYGVGVKITIDDYTVDF 75

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
              ++ +     A    K  +    DV   D        S L   +  ++  +   +P  
Sbjct: 76  -QQKMTAGELKTALRNVKYQKISTFDVPFRDRPKAGKEYSQLYNELHTIVYDIGGSNPSF 134

Query: 230 PHSVLQVLDATTGQNALRQ-VEMFHAVAG 257
               L+  +       + Q ++       
Sbjct: 135 SDYRLKATNFPEEAGRINQRIKTLFETVD 163


>gi|300783503|ref|YP_003763794.1| LAO/AO transport system kinase [Amycolatopsis mediterranei U32]
 gi|299793017|gb|ADJ43392.1| LAO/AO transport system kinase [Amycolatopsis mediterranei U32]
          Length = 321

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 13/153 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L+ +           L  + E  H  +  +++      + R  V+ + G  GVGK+T
Sbjct: 7   LDDLVGRARDGQPRAVARLLSLVEDAHPRVADIARALT-PHTGRARVVGLTGPPGVGKST 65

Query: 127 -VIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSADFVCSEIGSDA 178
                L+  +   G +V + A D        A+      +   A                
Sbjct: 66  STSALLTA-LRAEGKRVGVLAVDPSSPFSGGALLGDRIRMTEHATDPGVFIRSMATRGHL 124

Query: 179 AALAY---EAFKQAQAKKVDVLIIDTAGRLHNN 208
             L++   +A +   A   DV++I+T G   + 
Sbjct: 125 GGLSWATPQAVRVLDAAGFDVVLIETVGVGQSE 157


>gi|294630566|ref|ZP_06709126.1| ion-transporting ATPase [Streptomyces sp. e14]
 gi|292833899|gb|EFF92248.1| ion-transporting ATPase [Streptomyces sp. e14]
          Length = 476

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
             +  +++  G  GVGKTT    L  + ++ G KV++   D  R  A           S 
Sbjct: 39  DPKTRIVVCCGSGGVGKTTTAAALGLRAAERGRKVVVLTIDPARRLA-----QSMGIDSL 93

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           D V   +          A      +  D ++
Sbjct: 94  DNVPRRVKGTEEDGELYAMMLDMKRTFDEVV 124


>gi|291543925|emb|CBL17034.1| Ras superfamily GTP-binding protein YlqF [Ruminococcus sp. 18P13]
          Length = 290

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 52  LLIRSDIGVA-VAQKIVEELLTK---RYAKDVSVQRVLYDVSELIHKML-MPLSKPFNWD 106
           +L +SD+      Q+ +  L        A D    + +      + ++L   +++     
Sbjct: 60  ILNKSDMADERTTQQWLHRLRRSGCAAVAMDCKSGKGVKQFHPALRELLKEQIAQWRAKG 119

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLS 132
             +RP  ++VVG+  VGK++ I K++
Sbjct: 120 LVNRPIHVMVVGIPNVGKSSFINKMA 145


>gi|291536594|emb|CBL09706.1| Putative GTPases (G3E family) [Roseburia intestinalis M50/1]
          Length = 310

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 16/164 (9%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEI 174
           L+ G  G GKTT + K +  +   G  + +   D     A++   +       D    E+
Sbjct: 6   LITGFLGSGKTTFLRKYASYLITQGQNIGILENDF---GAVNVDMMLLGDLRGDNCELEM 62

Query: 175 GSDAAALAYEAFKQAQAK------KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            S          +             D +I++ +G    +        + +    ++   
Sbjct: 63  ISGGCDADTHRRRFKTKLISMGMCGYDRVIVEPSGIYDVDEFFDTLHEEPLDGWYQIG-- 120

Query: 229 APHSVLQVLDATTGQNALRQVE--MFHAVAGTTGLIMTKMDGTA 270
              +V+ VLD+   +N     +  +    A    +I++K   T 
Sbjct: 121 ---NVITVLDSNLEENLPEGADFLLASQAANAGCIILSKTQETT 161


>gi|290961593|ref|YP_003492775.1| ABC transporter ATP-binding protein [Streptomyces scabiei 87.22]
 gi|260651119|emb|CBG74240.1| putative ABC-transporter ATP-binding subunit [Streptomyces scabiei
           87.22]
          Length = 322

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-SAAI 155
            V+ ++G NG GKTT +  L+  +        +A  D  R   A+
Sbjct: 33  TVVGMLGPNGAGKTTAVRLLTTLLRPDAGSARIAGHDLVREPGAV 77


>gi|212715247|ref|ZP_03323375.1| hypothetical protein BIFCAT_00138 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661928|gb|EEB22503.1| hypothetical protein BIFCAT_00138 [Bifidobacterium catenulatum DSM
           16992]
          Length = 609

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 24/167 (14%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSAAIDQLKIWADRT----- 165
           + +VG  G GKTT++  L +    +G  + +   DT    R    DQ  +    T     
Sbjct: 399 VAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFHG 458

Query: 166 ----SADFVCSEIGSDAAALAYEAFKQAQA-----KKVDVLIIDTAGRLHNNSILMAGIG 216
               +  +    +  +    A +A    +         D ++ D A        L  G  
Sbjct: 459 TVRENIAYSKPGVTDEQIVAACKAVGLHRYIMSLPNGYDTVLDDKA-------SLSQGQK 511

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           +++ + + +   AP  +L    ++        ++             
Sbjct: 512 QLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSF 558


>gi|148679474|gb|EDL11421.1| DEAH (Asp-Glu-Ala-His) box polypeptide 38 [Mus musculus]
          Length = 1210

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 21/118 (17%)

Query: 58  IGVAVAQKIVEELLTK-------RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           +     QK  + +  K          K +  QR    +  +  ++L  +           
Sbjct: 480 VDYRTEQKFADHMKEKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRD--------- 530

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTS 166
             +++VVG  G GKTT   +L++ + + G       G T   R AA+   K  ++   
Sbjct: 531 NSIVIVVGETGSGKTT---QLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMG 585


>gi|190014723|ref|YP_001967487.1| RepA [Agrobacterium tumefaciens]
 gi|71849526|gb|AAZ50474.1| RepA [Agrobacterium tumefaciens]
          Length = 398

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 90  ELIHKML---MPLSKPFNWDFSHRPH--VILVVGV-NGVGKTTVIGKLSKKMSDAGLKVM 143
           + + + L       + ++   S + H  VI VV    G GKTT    L++ ++  G +V+
Sbjct: 89  QALREYLDLTGKNDRRYSPKRSGKEHLQVITVVNFKGGSGKTTTAAHLAQYLALNGYRVL 148

Query: 144 LAAGD 148
               D
Sbjct: 149 AIDLD 153


>gi|145490337|ref|XP_001431169.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398272|emb|CAK63771.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1006

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 80  SVQRVLYDVSELIHKMLMPLS-KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
             Q+      +++ + L     +           VI++VG  G GKTT   +L++ + + 
Sbjct: 346 EPQKPQKSAIQIVKEGLPIFKFRTQLLSLIRDNKVIVMVGETGSGKTT---QLAQYLHEV 402

Query: 139 GLKVMLAAGDTF--RSAAIDQLKIWADRTSA 167
           G       G T   R AA+      A     
Sbjct: 403 GYTRTGMIGCTQPRRVAAMSVASRVALEMGV 433


>gi|121727441|ref|ZP_01680569.1| adenylylsulfate kinase [Vibrio cholerae V52]
 gi|121630213|gb|EAX62613.1| adenylylsulfate kinase [Vibrio cholerae V52]
 gi|327485040|gb|AEA79447.1| Adenylylsulfate kinase [Vibrio cholerae LMA3894-4]
          Length = 215

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            RP V+   G++G GK+TV G L  +++  G    L  GD  R  
Sbjct: 37  QRPAVLWFTGLSGAGKSTVAGALENRLAALGYHTYLLDGDNVRHG 81


>gi|329939390|ref|ZP_08288726.1| ion-transporting ATPase [Streptomyces griseoaurantiacus M045]
 gi|329301619|gb|EGG45513.1| ion-transporting ATPase [Streptomyces griseoaurantiacus M045]
          Length = 509

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA----IDQLKIWADRT-SA 167
           +++  G  GVGKTT    L  + ++ G KV++   D  R  A    ID L     R    
Sbjct: 93  IVVCCGSGGVGKTTTAAALGLRAAERGRKVVVLTIDPARRLAQSMGIDALDNTPRRVKGV 152

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           D                 F +      D
Sbjct: 153 DDTAGGELHAMMLDMKRTFDEIVEAHAD 180


>gi|326669014|ref|XP_001919839.2| PREDICTED: hypothetical protein LOC100148872 [Danio rerio]
          Length = 771

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 40/207 (19%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL--KIW 161
             D + +  V+L+VG  G GKTT+I  +   +    L V     + ++    ++   +  
Sbjct: 66  EMDRNKQNKVLLMVGETGTGKTTLINTMINHL----LGVKFEDQEFYQITEEEEQRDQTQ 121

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN--SILMAGIGKMI 219
           +  +        +  +  +L                IIDT    H             + 
Sbjct: 122 SQTSEITVYEVFVKENPTSLT---------------IIDTPSYGHTKGFEKDGEIAEYLS 166

Query: 220 RVLKRLDP-HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG--------LIMTKMDGTA 270
           R+    D  H   +V  V+ A+  + + +++ +FH+V    G         +++  DG  
Sbjct: 167 RLFADEDGVHYIDTVCFVMKASQNRLSGKELYIFHSVLSLFGRDIENNIVFLLSYSDGGP 226

Query: 271 RGGGLIPI--------VVTHKIPVYFL 289
               L  I          +   PV+FL
Sbjct: 227 PADALNAIEKAEIPCRRDSRGKPVHFL 253


>gi|331235311|ref|XP_003330316.1| mannose-1-phosphate guanyltransferase [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309309306|gb|EFP85897.1| mannose-1-phosphate guanyltransferase [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 364

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 12/107 (11%)

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRV----LKRLDPHAPHSVLQVLDAT-TGQNALRQVEM 251
           ++ DT  +             +       L +       S   VL++  T    L+Q+  
Sbjct: 63  VLKDTEEKYGIRITFSVETEPLDTAGPLALAKDILGKDDSPFFVLNSDVTCSYPLKQLAA 122

Query: 252 FHAVAGTTGLIM-TKMDGTARGGGLIPIVVTH------KIPVYFLGV 291
           FH   G  G IM TK+D  ++ G ++ +  +       + PV F+G 
Sbjct: 123 FHQAHGKEGTIMVTKVDEPSKYGVVVQLPNSSAIDRFVEKPVEFVGN 169


>gi|307250341|ref|ZP_07532290.1| hypothetical protein appser4_11220 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307254986|ref|ZP_07536804.1| hypothetical protein appser9_12200 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259422|ref|ZP_07541147.1| hypothetical protein appser11_12190 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306857616|gb|EFM89723.1| hypothetical protein appser4_11220 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306861859|gb|EFM93835.1| hypothetical protein appser9_12200 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866358|gb|EFM98221.1| hypothetical protein appser11_12190 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 857

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 80/207 (38%), Gaps = 17/207 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++      I  L K       + +EG  + +   ++ +   EE+ ++L ++  G+ V+
Sbjct: 494 EKMSELQYGKIPALEKQLHEAVKREEEGSENQLLRTKVTE---EEIAEVLSKA-TGIPVS 549

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNG 121
            K++E    K    +  +   +   +E +  +   + +        +RP    L +G  G
Sbjct: 550 -KMMEGEKEKLLRMEEVLHSRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTG 608

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKT +   L+  + D    +        R    + ++  +           +G +    
Sbjct: 609 VGKTELCKTLANFLFDDPDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY 661

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             EA ++   +   V+++D   + H +
Sbjct: 662 LTEAVRR---RPYSVVLLDEVEKAHPD 685


>gi|300867943|ref|ZP_07112583.1| ATPase, AAA family protein [Oscillatoria sp. PCC 6506]
 gi|300334080|emb|CBN57761.1| ATPase, AAA family protein [Oscillatoria sp. PCC 6506]
          Length = 527

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 21/149 (14%)

Query: 5   KVASESLSWIRKLTKGFASTSLK--LKEGITDI--ISSRRLDDGVREELEDLLIRSDIGV 60
           +++  +   + K  +G +   ++  L + +     I+   +D+ V EE    + ++    
Sbjct: 187 EMSDLAKEQLVKACQGLSRARIRRVLAKALAAKQQINESDIDE-VLEEKRQAIRQTG--- 242

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
                I+E   TK   K V     L +  +L        ++ +       P  +L+VG+ 
Sbjct: 243 -----ILEFFTTKESLKSVGGLDNLKEWIKLRQDAFTEEAQRYGIP---NPKGVLLVGIQ 294

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           G GK+     L+ K       + L   DT
Sbjct: 295 GSGKS-----LAAKSIAHEWHLPLLRMDT 318


>gi|295688368|ref|YP_003592061.1| cytosolic protein [Caulobacter segnis ATCC 21756]
 gi|295430271|gb|ADG09443.1| cytosolic protein [Caulobacter segnis ATCC 21756]
          Length = 294

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           D    P V+ + G  G GK+T++  + + ++  GLKV + + D
Sbjct: 41  DEGRSPLVVGICGPQGSGKSTLVALVERLLAARGLKVAVLSID 83


>gi|262371958|ref|ZP_06065237.1| cell division protein [Acinetobacter junii SH205]
 gi|262311983|gb|EEY93068.1| cell division protein [Acinetobacter junii SH205]
          Length = 631

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 25/168 (14%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  + + +++  L  P  +    +  P  +L+VG  G GKT     L+K ++        
Sbjct: 164 EAKQEVVEIVDFLKDPAKFKRLGATIPRGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 219

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           +   +                  +       S    +  +A + A      +  ID  GR
Sbjct: 220 SISGS---------------DFVEMFVGVGASRVRDMFEQAKRHAPCIIF-IDEIDAVGR 263

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                           + ++L  +D    +  + V+ AT   + L + 
Sbjct: 264 HRGSGTGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRVDVLDKA 311


>gi|255536557|ref|YP_003096928.1| Cell division protein ftsH [Flavobacteriaceae bacterium 3519-10]
 gi|255342753|gb|ACU08866.1| Cell division protein ftsH [Flavobacteriaceae bacterium 3519-10]
          Length = 677

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 55/186 (29%), Gaps = 25/186 (13%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E+   +   KDV+      +  + +   L    K +       P  +L+VG  G GKT  
Sbjct: 196 EKDKVQVTFKDVAGLEGAKEEVQEVVDFLKNSDK-YTKLGGKIPKGVLLVGPPGTGKT-- 252

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L+K ++        +   +                   FV           A    K
Sbjct: 253 --LLAKAVAGEAKVPFFSLSGS--------------DFVEMFVGVGASRVRDLFAQAKAK 296

Query: 188 QAQAKKVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
                 +D   ID  GR                 + ++L  +D     + + V+ AT   
Sbjct: 297 SPAIIFIDE--IDAIGRARGKGNFTGGNDERENTLNQLLTEMDGFGTDTNVIVMGATNRA 354

Query: 244 NALRQV 249
           + L + 
Sbjct: 355 DILDKA 360


>gi|225175466|ref|ZP_03729461.1| ABC transporter related protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169218|gb|EEG78017.1| ABC transporter related protein [Dethiobacter alkaliphilus AHT 1]
          Length = 281

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           V   +G NG GKTT +  L+ ++   G +  +   D      + QL I
Sbjct: 30  VFGFLGPNGAGKTTTLKILAGQLQPTGGQATILGMDVTTQKQVVQLNI 77


>gi|221107484|ref|XP_002163295.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 15
           [Hydra magnipapillata]
          Length = 724

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 20/157 (12%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
              +     I++VG  G GKTT I +    +   G +  +      R AA+   +  AD 
Sbjct: 82  LKITKENQCIVLVGETGSGKTTQIPQWCLDLVSMGRRKHVCCTQPRRVAAMSVAQRVADE 141

Query: 165 TSADF-------VCSEIGSDAAALA---------YEAFKQAQAKKVDVLIIDTA-GRLHN 207
                       +  E  S A  +           EA       +  V+++D A  R   
Sbjct: 142 MDVTLGQEVGYSIRFEDCSSARTVMKYMTDGMLLREAMTDPLLDRYGVILLDEAHERTLA 201

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
             IL   +G +  V+K+        +   LDA   Q+
Sbjct: 202 TDIL---MGLIKEVIKQRPDLKVIIMSATLDAGKFQD 235


>gi|218514191|ref|ZP_03511031.1| conjugal transfer protein A [Rhizobium etli 8C-3]
          Length = 255

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 78/229 (34%), Gaps = 37/229 (16%)

Query: 37  SSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
           + +  +  V    E L I  D+  +        +L++R    VS + V   +  +     
Sbjct: 39  TGKVSEPAVFTTREMLRIEYDMAQSA------RVLSERRGFGVSERNVTVAIERVESIES 92

Query: 97  MPLSKPFNWDFSHRPHV---------ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
                PF  D      V           +VG+ G GK+T++   + +++  G    +   
Sbjct: 93  GDPKTPFRLDAEQVDAVRHVTGDGGIAAIVGLAGAGKSTLLA--AARLAWEGEGHRVIGA 150

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
               + A    +   D +       +  + A+     A  +    + DVL+ID AG +  
Sbjct: 151 ----ALAGKAAEGLQDSSGI-----KSRTLASWELAWANGRDTLHRGDVLVIDEAGMVA- 200

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
                    +M RVL ++   A   V+ V DA   Q    Q        
Sbjct: 201 -------SQQMARVL-KIAEEAEVKVVLVGDAMQLQPI--QAGAAFRAI 239


>gi|238614642|ref|XP_002398730.1| hypothetical protein MPER_00622 [Moniliophthora perniciosa FA553]
 gi|215475860|gb|EEB99660.1| hypothetical protein MPER_00622 [Moniliophthora perniciosa FA553]
          Length = 203

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
             D    P ++ +VG  GVGKTT++  L ++    
Sbjct: 21  TPDDEPPPEIVAMVGPPGVGKTTLLKSLVRRYKKQ 55


>gi|190344682|gb|EDK36410.2| hypothetical protein PGUG_00508 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1115

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 53/186 (28%), Gaps = 7/186 (3%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGV 119
            V   ++ E   K     VS  +      +   + L     +            +++VG 
Sbjct: 409 EVTTSVISEWREKEKKTKVSFGKRTNLPIKEQRETLPVFSMRDDIVKAVRENQFLVIVGE 468

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
            G GKTT I    + + + G       GD  +     Q +  A  + A  V  E+G    
Sbjct: 469 TGSGKTTQIV---QYLYEEGFNQ---QGDQTKLIGCTQPRRVAAESVAKRVSEEVGCKIG 522

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
                  +       +  I      +     L         V+   + H       VL A
Sbjct: 523 ETVGYTIRFDDKTGPNTRIKYMTDGMLQREALNDKEMSKYSVIMLDEAHERTIATDVLFA 582

Query: 240 TTGQNA 245
              Q A
Sbjct: 583 LLKQAA 588


>gi|157164054|ref|YP_001466562.1| cytochrome c oxidase, heme b and copper-binding subunit,
           membrane-bound [Campylobacter concisus 13826]
 gi|112800262|gb|EAT97606.1| ATP/GTP-binding protein [Campylobacter concisus 13826]
          Length = 366

 Score = 37.1 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 85/250 (34%), Gaps = 38/250 (15%)

Query: 50  EDLLIRSDIGVAVAQ---KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           E +LI     V +     ++  EL T       S + VL  +   I +         N  
Sbjct: 36  EKILIE----VEIVSSSPEVANELKTDIKRVMGSNEYVLNLIQPKIPEEKSNTQSGKNIA 91

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              +  V++  G  GVGK+T    L+  M+  G KV +   D +               +
Sbjct: 92  PQVKNFVMVSSGKGGVGKSTTTLNLAISMAKLGKKVGILDADIYGP-------------N 138

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRL 225
              +  E+ +    +     K   +  V+++   + G L      L+     +++ +++L
Sbjct: 139 IPRMLGEVNTQPQ-VVGNKLKPILSHGVEMM---SMGVLMEEGMSLIWRGSMIMKAIEQL 194

Query: 226 DPHAPHSVLQV----LDATTGQNALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIP 277
                 S L V    +   TG   L   +     AG    + T     +D + R    + 
Sbjct: 195 LRDVLWSELDVLFLDMPPGTGDAQLTLAQSVPVTAGV--CVTTPQVVALDDSKR---ALD 249

Query: 278 IVVTHKIPVY 287
           +     IP+ 
Sbjct: 250 MFEKLHIPIA 259


>gi|325271786|ref|ZP_08138258.1| ABC transporter-like protein [Pseudomonas sp. TJI-51]
 gi|324103078|gb|EGC00453.1| ABC transporter-like protein [Pseudomonas sp. TJI-51]
          Length = 246

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG---DTFRSAAIDQLKIWADRTSADFVCS 172
           ++G NG GK+T+I  L++        + +      DT R  A+ Q+ +   +++ D   S
Sbjct: 34  LLGPNGAGKSTLIALLTRLYDLQHGDIRVCGCSLRDTPRP-ALRQMGVVFQQSTLDLDLS 92

Query: 173 EIGSDAAALAYEAFKQ 188
              +     A     +
Sbjct: 93  VEQNLRYHAALHGLSR 108


>gi|322497908|emb|CBZ32983.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 214

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKM 135
           I++ G  G GKTT+  KL+   
Sbjct: 54  IIITGPPGSGKTTLAAKLAAHY 75


>gi|320334032|ref|YP_004170743.1| twitching motility protein [Deinococcus maricopensis DSM 21211]
 gi|319755321|gb|ADV67078.1| twitching motility protein [Deinococcus maricopensis DSM 21211]
          Length = 377

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           T + +++ + +++      +   +ELE     +D   A+    V       + +  S   
Sbjct: 42  TRMNVRDILAEMLPGTISMEDFEQELE-----ADFAYAIDH--VARFRVNAFFQRGSAAL 94

Query: 84  VLYDVSELIHK--MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           VL  +   I    +L    +   +  +    +ILV G  G GKTT + 
Sbjct: 95  VLRVIKNNIPDFRVLGLPEQVMEYFAAQERGLILVTGPTGSGKTTTLA 142


>gi|289449709|ref|YP_003475576.1| putative negative regulator of genetic competence ClpC/MecB
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184256|gb|ADC90681.1| putative negative regulator of genetic competence ClpC/MecB
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 945

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 34/158 (21%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDG----------------- 44
           +   +  + L    KL    A    KL E    I  +  L +                  
Sbjct: 540 AKANLKQKELVQAAKLKDKIAELGQKLSETERQISEAGNLSESESNELYEKKAKFTAEKL 599

Query: 45  -VREELEDL--LIR------SDIGVAV-------AQKIVEELLTKRYAKDVSVQRVLYDV 88
              EEL+ L  L++       DI   V        + I E    K    +  + + +   
Sbjct: 600 QTEEELKSLQPLLQPVEITNEDIAAVVEMWTGIPVKSITESETEKLINLESRLHQRVIGQ 659

Query: 89  SELIHKMLMPLSKP-FNWDFSHRPHVILVVGVNGVGKT 125
           +E I  +   + +    +   ++P   + VG  GVGKT
Sbjct: 660 NEAIAVLSKAVRRSRAGFGRRNKPASFIFVGPTGVGKT 697


>gi|167573931|ref|ZP_02366805.1| ClpA/B type protease [Burkholderia oklahomensis C6786]
          Length = 708

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 23/148 (15%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ + L  +   +    +  +  ++E I      L  P       +PH V L+ G +G
Sbjct: 398 VLKLADTLAERVVGQ----RHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 447

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L+  +       +      F+ A           T +    +  G     
Sbjct: 448 VGKTETALA-LADMLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 496

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                 +  + +   V+++D   + H +
Sbjct: 497 QGGVLTEAVRRRPYSVVLLDEIEKAHRD 524


>gi|152988503|ref|YP_001346799.1| general secretory pathway protein E [Pseudomonas aeruginosa PA7]
 gi|150963661|gb|ABR85686.1| general secretory pathway protein E [Pseudomonas aeruginosa PA7]
          Length = 490

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 19/120 (15%)

Query: 15  RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA-----QKIVEE 69
           R+   G   + +K+   +   I+ +R+    R  L       D+ V+       +++V  
Sbjct: 155 RRELAGLLVSRIKVMARLD--IAEKRIPQDGRIALRIAGHEVDVRVSTLPSAHGERVVMR 212

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVI 128
           LL K+  +            +L    +   ++        RPH IL+V G  G GKTT +
Sbjct: 213 LLDKQAGR-----------LDLGRLGMAEATRGRLEGALRRPHGILLVTGPTGSGKTTTL 261


>gi|32490980|ref|NP_871234.1| hypothetical protein WGLp231 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166186|dbj|BAC24377.1| hflB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 638

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 52/173 (30%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +    +   L   S+ F       P  IL+VG  G GKT     L+K ++ 
Sbjct: 156 DVAGCDEAKEEVSELVDYLKEPSR-FQKLGGKIPKGILMVGPPGTGKT----LLAKAIAG 210

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 211 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFDQAKKTAPCIIF-ID 254

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 255 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEEIIVIAATNRPDVLD 307


>gi|307566406|ref|ZP_07628843.1| putative hemolysin B [Prevotella amnii CRIS 21A-A]
 gi|307344878|gb|EFN90278.1| putative hemolysin B [Prevotella amnii CRIS 21A-A]
          Length = 871

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 56  SDI-----GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR 110
           +D+     GV V QKI E    K    D  ++ V+      I KM+  + +         
Sbjct: 530 ADVVAMMSGVPV-QKIKEAEGVKLKNMDKELKEVVIAQDNAIEKMVKAIQRN-RVGLRDP 587

Query: 111 PHVI---LVVGVNGVGKTTVIGKLS 132
            H I   + +G  GVGKT +  KL+
Sbjct: 588 NHPIGAFMFLGPTGVGKTYLAKKLA 612


>gi|294505366|ref|YP_003569428.1| cell division protein [Yersinia pestis Z176003]
 gi|294355825|gb|ADE66166.1| cell division protein [Yersinia pestis Z176003]
          Length = 607

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 122 EAKEEVSELVDYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 177

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 178 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 221

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 222 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 267


>gi|293609977|ref|ZP_06692279.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828429|gb|EFF86792.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 631

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 25/168 (14%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  + + +++  L  P  +    +  P  +L+VG  G GKT     L+K ++        
Sbjct: 164 EAKQEVVEIVDFLKDPAKFKRLGATIPRGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 219

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           +   +                  +       S    +  +A + A      +  ID  GR
Sbjct: 220 SISGS---------------DFVEMFVGVGASRVRDMFEQAKRHAPCIIF-IDEIDAVGR 263

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                           + ++L  +D    +  + V+ AT   + L + 
Sbjct: 264 HRGSGTGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRVDVLDKA 311


>gi|255711140|ref|XP_002551853.1| KLTH0B01452p [Lachancea thermotolerans]
 gi|238933231|emb|CAR21415.1| KLTH0B01452p [Lachancea thermotolerans]
          Length = 299

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 108 SHRPHVILVVGVNGVGKTTVIG----KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWAD 163
              P ++L+ G  G GKTT       KL  ++    LK +  + D F     DQ K+  +
Sbjct: 29  DRSPFLVLISGPQGSGKTTSTHAIKQKL-HELRPE-LKCLCVSIDDFYLTHADQQKVSNN 86

Query: 164 RTS 166
            + 
Sbjct: 87  NSG 89


>gi|225848141|ref|YP_002728304.1| negative regulator of genetic competence ClpC/mecB
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643714|gb|ACN98764.1| negative regulator of genetic competence ClpC/mecB
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 814

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRP-HVILV 116
           G+ +A ++ E    K    +  + + + D +E I  +   + +        HRP  V L 
Sbjct: 478 GIPIA-RLTESNKEKLLHIEEELHKRVVDQNEAITAIAKAIRRNSVGLKGRHRPIGVFLF 536

Query: 117 VGVNGVGKTTVIGKLSKKM 135
           +G  GVGKT     L++ +
Sbjct: 537 LGPTGVGKTETAKALAEYL 555


>gi|225352492|ref|ZP_03743515.1| hypothetical protein BIFPSEUDO_04114 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156999|gb|EEG70368.1| hypothetical protein BIFPSEUDO_04114 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 609

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 24/167 (14%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSAAIDQLKIWADRT----- 165
           + +VG  G GKTT++  L +    +G  + +   DT    R    DQ  +    T     
Sbjct: 399 VAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRG 458

Query: 166 ----SADFVCSEIGSDAAALAYEAFKQAQA-----KKVDVLIIDTAGRLHNNSILMAGIG 216
               +  +    +  +    A +A    +         D ++ D A        L  G  
Sbjct: 459 TVRENIAYSKPGVTDEQIVAACKAVGLHRYIMSLPNGYDTVLDDKA-------SLSQGQK 511

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           +++ + + +   AP  +L    ++        ++             
Sbjct: 512 QLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSF 558


>gi|224538168|ref|ZP_03678707.1| hypothetical protein BACCELL_03059 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520214|gb|EEF89319.1| hypothetical protein BACCELL_03059 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 366

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 71/224 (31%), Gaps = 41/224 (18%)

Query: 63  AQKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
             + VE ++       ++ V++   +    + + + +  + +   +  +     I   GV
Sbjct: 40  VAEFVEGIVKGDVTVLSQAVTLVESVKPEHQALAQEV--IERCLPYSGNSIRVGIS--GV 95

Query: 120 NGVGKTTVI------------GKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRT 165
            G GK+T I            GKL+    D  +        GD  R   ++QL +     
Sbjct: 96  PGAGKSTSIDVFGLHVLEKYEGKLAVLAIDPSSERSKGSILGDKTR---MEQLSVHPKSF 152

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                 +      A    E     +A   D + ++T G   + +                
Sbjct: 153 IRPSPSAGSLGGVARKTRETIILCEAAGFDKIFVETVGVGQSETA--------------- 197

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
             H+      ++      + L+ ++         G+++ K DG 
Sbjct: 198 -VHSMVDFFLLIQLAGTGDELQGIKRGIMEMA-DGIVINKADGD 239


>gi|254423952|ref|ZP_05037670.1| Type II/IV secretion system protein, putative [Synechococcus sp.
           PCC 7335]
 gi|196191441|gb|EDX86405.1| Type II/IV secretion system protein, putative [Synechococcus sp.
           PCC 7335]
          Length = 371

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIG 129
            L  +S  I  M +    P   + S +P  +++V G  G GKTT + 
Sbjct: 97  CLRALSSKIPSMDVLGLPPIVTELSEKPRGLVLVTGPTGSGKTTTLA 143


>gi|187734670|ref|YP_001876782.1| ABC transporter [Akkermansia muciniphila ATCC BAA-835]
 gi|187424722|gb|ACD04001.1| ABC transporter related [Akkermansia muciniphila ATCC BAA-835]
          Length = 616

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           P+ +  +        V+ +VG +G GKTT I  L +  
Sbjct: 383 PVMRNIDLRIPSG-QVVALVGPSGAGKTTFINLLCRFY 419


>gi|183600360|ref|ZP_02961853.1| hypothetical protein PROSTU_03923 [Providencia stuartii ATCC 25827]
 gi|188020151|gb|EDU58191.1| hypothetical protein PROSTU_03923 [Providencia stuartii ATCC 25827]
          Length = 656

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVGEIVDFLREPARFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRADVLD 304


>gi|169794970|ref|YP_001712763.1| cell division protein [Acinetobacter baumannii AYE]
 gi|239503387|ref|ZP_04662697.1| cell division protein [Acinetobacter baumannii AB900]
 gi|260549222|ref|ZP_05823442.1| cell division protein [Acinetobacter sp. RUH2624]
 gi|260556452|ref|ZP_05828670.1| cell division protein [Acinetobacter baumannii ATCC 19606]
 gi|332855129|ref|ZP_08435712.1| cell division protease FtsH [Acinetobacter baumannii 6013150]
 gi|332868237|ref|ZP_08438079.1| cell division protease FtsH [Acinetobacter baumannii 6013113]
 gi|332876155|ref|ZP_08443937.1| cell division protease FtsH [Acinetobacter baumannii 6014059]
 gi|169147897|emb|CAM85760.1| cell division protein [Acinetobacter baumannii AYE]
 gi|193078151|gb|ABO13094.2| cell division protein [Acinetobacter baumannii ATCC 17978]
 gi|260407628|gb|EEX01101.1| cell division protein [Acinetobacter sp. RUH2624]
 gi|260409711|gb|EEX03011.1| cell division protein [Acinetobacter baumannii ATCC 19606]
 gi|332727632|gb|EGJ59051.1| cell division protease FtsH [Acinetobacter baumannii 6013150]
 gi|332733498|gb|EGJ64668.1| cell division protease FtsH [Acinetobacter baumannii 6013113]
 gi|332735653|gb|EGJ66698.1| cell division protease FtsH [Acinetobacter baumannii 6014059]
          Length = 631

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 25/168 (14%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  + + +++  L  P  +    +  P  +L+VG  G GKT     L+K ++        
Sbjct: 164 EAKQEVVEIVDFLKDPAKFKRLGATIPRGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 219

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           +   +                  +       S    +  +A + A      +  ID  GR
Sbjct: 220 SISGS---------------DFVEMFVGVGASRVRDMFEQAKRHAPCIIF-IDEIDAVGR 263

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                           + ++L  +D    +  + V+ AT   + L + 
Sbjct: 264 HRGSGTGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRVDVLDKA 311


>gi|29828467|ref|NP_823101.1| gluconokinase [Streptomyces avermitilis MA-4680]
 gi|29605570|dbj|BAC69636.1| putative gluconokinase [Streptomyces avermitilis MA-4680]
          Length = 188

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            ++LVVGV G GKTT +GK         L +    GD F  AA
Sbjct: 17  PIVLVVGVTGSGKTT-VGK----AVAEQLGLEFVEGDDFHPAA 54


>gi|3661575|gb|AAC61758.1| non-structural polyprotein [VESV-like calicivirus]
          Length = 1880

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 17/107 (15%)

Query: 54  IRSDIGVAVA---QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS---------K 101
           I +DI        Q++ E L  +  +  ++     Y    ++  ++  L          K
Sbjct: 519 ITADI--DAVINLQRLAEVLREEVKSHTLNPLMQPYTP--ILRNLMSALDNVISCCTRRK 574

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                 +    VIL  G  G GKTT    L+K++S     ++    D
Sbjct: 575 AIATKRTAPVAVIL-TGPPGCGKTTAAFALAKRLSQQKPSIISLDVD 620


>gi|147675279|ref|YP_001218051.1| adenylylsulfate kinase [Vibrio cholerae O395]
 gi|262167581|ref|ZP_06035286.1| adenylylsulfate kinase [Vibrio cholerae RC27]
 gi|146317162|gb|ABQ21701.1| adenylylsulfate kinase [Vibrio cholerae O395]
 gi|227014446|gb|ACP10656.1| adenylylsulfate kinase [Vibrio cholerae O395]
 gi|262024034|gb|EEY42730.1| adenylylsulfate kinase [Vibrio cholerae RC27]
          Length = 215

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            RP V+   G++G GK+TV G L  +++  G    L  GD  R  
Sbjct: 37  QRPAVLWFTGLSGAGKSTVAGALENRLAALGYHTYLLDGDNVRHG 81


>gi|186685425|ref|YP_001868621.1| ABC transporter [Nostoc punctiforme PCC 73102]
 gi|186467877|gb|ACC83678.1| ABC transporter related [Nostoc punctiforme PCC 73102]
          Length = 630

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K  N    H   +I++VG NG GKTT+   L +    +   ++    D  RS  ++ 
Sbjct: 397 PILKNINLKI-HPNEMIVLVGENGAGKTTLTKLLCRLYDPSQGAIIWNGEDL-RSLPLED 454

Query: 158 LKIWADRTSADFVCSEIGSDAAAL 181
           L+     +  D V  +       +
Sbjct: 455 LR-----SRIDVVMQDYARFPTTV 473


>gi|328882300|emb|CCA55539.1| Lipid A export ATP-binding or permease protein MsbA [Streptomyces
           venezuelae ATCC 10712]
          Length = 641

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 9/103 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFS 108
           L++S  GVA A++I E L  +    D      + D+   +    +       KP   D S
Sbjct: 359 LVQS--GVASAERIFELLDAEEQEPDAPTGEKVADLKGKVALEGVSFRYEADKPLIEDLS 416

Query: 109 HRP---HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                   + +VG  G GKTT++  L +     G ++ L   D
Sbjct: 417 LTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVD 459


>gi|320333578|ref|YP_004170289.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
 gi|319754867|gb|ADV66624.1| ATP-dependent metalloprotease FtsH [Deinococcus maricopensis DSM
           21211]
          Length = 624

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 63/190 (33%), Gaps = 35/190 (18%)

Query: 71  LTKRYAKDVSVQRVLYDVS--ELIHKMLMPLSKPFNWDF------SHRPHVILVVGVNGV 122
             KRY K+  V     DV+  E   K L+ +              +  P  +L+VG  G 
Sbjct: 153 RAKRYGKENKVSTTFRDVAGHEEAKKELVEVVDFLKNPGKYHQIGAEIPKGVLLVGPPGT 212

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GKT     L++         +    D   F  +A + ++                S    
Sbjct: 213 GKT----LLAR--------AVAGEADAPFFSVSASEFME---------MFVGVGASRVRT 251

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
           L  +A K A A    +  ID+ GR                + ++L  +D     S + VL
Sbjct: 252 LFDDARKSAPAIIF-IDEIDSIGRKRGAGIGGGHDEREQTLNQILSEMDGFDKTSSVIVL 310

Query: 238 DATTGQNALR 247
            AT   + L 
Sbjct: 311 AATNRPDILD 320


>gi|325109733|ref|YP_004270801.1| type II secretion system protein E (GspE) [Planctomyces
           brasiliensis DSM 5305]
 gi|324970001|gb|ADY60779.1| type II secretion system protein E (GspE) [Planctomyces
           brasiliensis DSM 5305]
          Length = 564

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT--FRSAAI 155
            + KPF    S    ++LV G  G GKTT +   +     +    ++   D   +R   I
Sbjct: 299 QVEKPFRRLISQPHGIVLVTGPTGSGKTTTLY-SALHAIKSPEVKIITVEDPVEYRMDGI 357

Query: 156 DQLKIWAD 163
            Q+ + + 
Sbjct: 358 SQIHVHSQ 365


>gi|307103115|gb|EFN51378.1| hypothetical protein CHLNCDRAFT_37431 [Chlorella variabilis]
          Length = 238

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 21/174 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           KD++    + +    I + L   ++  +   +  P  +L+VG  G GKT     L+K ++
Sbjct: 55  KDIAGIDQVKEEITEIVQFLRDPARFLSLG-ARSPAGMLLVGPPGTGKT----LLAKAVA 109

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK-KVD 195
                   +   T                  +       S    +  +A   A     +D
Sbjct: 110 GEAGVPFFSIAGT---------------EFMEMFVGVGASRVRDIFKQARANAPCILFID 154

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                   R +        +  + ++L  +D    ++ + V+ AT   ++L Q 
Sbjct: 155 EFDGIGQARSYGGGGGDENVHTINQLLTEMDGFEDNTGIVVMAATNRPSSLDQA 208


>gi|291440285|ref|ZP_06579675.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291343180|gb|EFE70136.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 632

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
           ++ +VG NG GKTT++  L+   +    +++    D   +AA+D
Sbjct: 397 IVALVGENGSGKTTLVKLLAGLYTPERGRILWDDVD---AAAVD 437


>gi|261326522|emb|CBH09483.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 270

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 3/105 (2%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
            V+ L+   +  L          R   +L+VG+ G GKTT+  +L  +        M   
Sbjct: 9   IVALLVAYYISTLFSAVRGTTRRRSRSVLLVGLTGSGKTTLFAQLVARKRVEVRTSMEPN 68

Query: 147 GDTFRSAAIDQLK---IWADRTSADFVCSEIGSDAAALAYEAFKQ 188
               R A+  + +     ++ +    +              A ++
Sbjct: 69  RGVMRLASAAENEDPTAGSESSGVTIIDFPGHRRLRESLMRALEE 113


>gi|261493173|ref|ZP_05989704.1| endopeptidase ClpA [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495905|ref|ZP_05992327.1| endopeptidase ClpA [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308426|gb|EEY09707.1| endopeptidase ClpA [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311176|gb|EEY12348.1| endopeptidase ClpA [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 855

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 73/207 (35%), Gaps = 18/207 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++      I  L K   +     K     ++ ++  ++ + E L         G+ VA
Sbjct: 494 EKMSELQYGVIPNLEKQLQAVENGEKNADAQLLRTKVTEEEIAEVLSKA-----TGIPVA 548

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNG 121
            K++E    K    +  +   +   +E +  +   + +        ++P    L +G  G
Sbjct: 549 -KMMEGEKEKLLRMEEVLHARVIGQNEAVDAVTNAIRRSRAGLSDPNKPIGSFLFLGPTG 607

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKT +   L+  + D    +        R    + ++  +           +G +    
Sbjct: 608 VGKTELSKTLANFLFDDPDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY 660

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             EA ++       V+++D   + H +
Sbjct: 661 LTEAVRR---HPYSVVLLDEVEKAHPD 684


>gi|260588697|ref|ZP_05854610.1| CO dehydrogenase/acetyl-CoA synthase complex, accessory protein
           CooC [Blautia hansenii DSM 20583]
 gi|331081956|ref|ZP_08331084.1| hypothetical protein HMPREF0992_00008 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541172|gb|EEX21741.1| CO dehydrogenase/acetyl-CoA synthase complex, accessory protein
           CooC [Blautia hansenii DSM 20583]
 gi|330405551|gb|EGG85081.1| hypothetical protein HMPREF0992_00008 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 255

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I V G  GVGKTT    L++  ++ G  V+ A  D
Sbjct: 3   IAVTGKGGVGKTTFAATLARLYAEEGKHVLAADVD 37


>gi|218290616|ref|ZP_03494718.1| Type IV secretory pathway VirB4 protein-like protein
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218239400|gb|EED06597.1| Type IV secretory pathway VirB4 protein-like protein
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 802

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML---AAGDTFRSAAIDQLKIWADRT 165
            RP  +L+ G  G GKT     ++  +   G +V +      D       D L    +  
Sbjct: 447 DRPPSVLICGTLGSGKTVTTAYVAAMLLAQGARVFVQDPKGHD------YDGLAQLPNVR 500

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           S     +                A+   +D+L+ DT      +
Sbjct: 501 SRFLRMTPDEGTPINPCRLGVPGAERGVLDILLNDTTDPNVRD 543


>gi|170291208|ref|YP_001738024.1| ATPase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170175288|gb|ACB08341.1| AAA ATPase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 529

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 85  LYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           +  V  L+   L    LS       S R   IL+ G  G GKTT    L++   + G 
Sbjct: 222 ITAVRPLVKVTLDDYNLSDKLKRRLSERAEGILIAGPPGAGKTTFASALAEFYKERGR 279


>gi|170697789|ref|ZP_02888875.1| type VI secretion ATPase, ClpV1 family [Burkholderia ambifaria
           IOP40-10]
 gi|170137291|gb|EDT05533.1| type VI secretion ATPase, ClpV1 family [Burkholderia ambifaria
           IOP40-10]
          Length = 897

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 31/178 (17%)

Query: 40  RLDDGVREELEDLLIRSD-----IGVAVAQKI--VEELLTKRYAKDVSVQRVLYDVSELI 92
            +D+ +  E     I SD     +G  V  ++  V +L     A+ +     L  + E +
Sbjct: 548 EVDEAIVAE-----IVSDWTGIPVGRMVTDEVAAVRKLPETLEARVIGQADALRQIGERV 602

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFR 151
                 L+ P          V L+ G +GVGKT T +  L++ +      ++      ++
Sbjct: 603 QTARAGLTDP-----RKPVGVFLLAGPSGVGKTETALA-LAEALYGGEQNLITINMSEYQ 656

Query: 152 SA-AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            A  +  LK            +  G           +  + +   V+++D   + H +
Sbjct: 657 EAHTVSGLK-----------GAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHRD 703


>gi|148378721|ref|YP_001253262.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934277|ref|YP_001383106.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935432|ref|YP_001386656.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str.
           Hall]
 gi|148288205|emb|CAL82274.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|152930321|gb|ABS35821.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931346|gb|ABS36845.1| ABC transporter, ATP-binding protein [Clostridium botulinum A str.
           Hall]
          Length = 517

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L   +    +
Sbjct: 320 PENIIFNASNLIIGYNKPLSKPLNLKM-KRGQKIAITGANGIGKTTLIKTLLGLLKP--I 376

Query: 141 KVMLAAGDTFRSAAIDQ 157
              +   D  +    +Q
Sbjct: 377 NGEVTLSDYKKIGYFEQ 393


>gi|38505918|ref|NP_942536.1| ParA family chromosome partitioning protein [Synechocystis sp. PCC
           6803]
 gi|38423942|dbj|BAD02150.1| ParA family chromosome partitioning protein [Synechocystis sp. PCC
           6803]
          Length = 198

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 18/98 (18%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            V    G  GVGKTT    L+  +++     +L  GD  RSA               +  
Sbjct: 4   TVTAFKG--GVGKTTSSIHLAAYLNNK-APTILIDGDLNRSA-------------LLWAS 47

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
            E          E  K A+    + +++DT  R     
Sbjct: 48  HEKLDFPVVDEREGLKAAR--NYEHIVVDTPARPEIEE 83


>gi|116619856|ref|YP_822012.1| ABC transporter-like protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223018|gb|ABJ81727.1| ABC transporter related [Candidatus Solibacter usitatus Ellin6076]
          Length = 610

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 9/120 (7%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT--FRSAAIDQLKIWADRTSADFVC 171
           + +VG NG GKTT++  +++     G  + L   D   +R   +D+L+        DF  
Sbjct: 394 VALVGENGQGKTTLVKLMTRLYDPTGGAIFLDGVDLREYR---VDELRHEIGVIFQDFFR 450

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
            ++             + +    D  + D A R      +      + ++L R       
Sbjct: 451 YDMAMRENI----GVGKVELLGNDSALWDAAKRSKVEETIAELPAGLNQMLGRRFEGGVD 506


>gi|23013900|ref|ZP_00053749.1| COG1703: Putative periplasmic protein kinase ArgK and related
           GTPases of G3E family [Magnetospirillum magnetotacticum
           MS-1]
          Length = 333

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 28/171 (16%)

Query: 107 FSHRPHVILVVGVNGVGKTTVI-GKLSKKMSDAGLKVMLAAGD--TFRSAA-----IDQL 158
              R HV+ + G  GVGK+T++   ++      G  V   A D  + RS         +L
Sbjct: 63  AEPRAHVVGMTGPPGVGKSTLMNALIAAW-RAGGRTVGCIAVDPSSRRSGGALLGDRTRL 121

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLIIDTAGRLHNNSILMAGIG 216
               +                 LA          +   DV++I+T G   + +       
Sbjct: 122 TTDPEDQGIFVRSMAARDRLGGLAALTVSAMVLMRALYDVVLIETVGVGQSETD------ 175

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
                          +VL  +   +G ++L+ ++   A      +++TK D
Sbjct: 176 ---------VVGVADTVLFCVQPGSG-DSLQFMKAGIAEIP-HVVVVTKAD 215


>gi|328875275|gb|EGG23640.1| hypothetical protein DFA_05774 [Dictyostelium fasciculatum]
          Length = 232

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 43/144 (29%), Gaps = 14/144 (9%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
                V LV+G  G GK+T I  L                DT    AI   +        
Sbjct: 2   DKPNKVFLVLGRYGEGKSTFINTLCNFFDGG-------PCDTELKVAIPN-EHLVQNRMI 53

Query: 168 DFVCSEIGSDAAA----LAYEAFKQAQ--AKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           +   SE+              A  Q +    + D   +DT G   ++        ++ + 
Sbjct: 54  EVKPSEVALPLGERGRTTKQCALYQFRVPLGECDFAFVDTPGLGSSHMTEEEVKMEIRKC 113

Query: 222 LKRLDPHAPHSVLQVLDATTGQNA 245
           L        H V+ V++ T     
Sbjct: 114 LTSTYASNIHGVIVVINPTLVGQD 137


>gi|326333991|ref|ZP_08200221.1| dethiobiotin synthase [Nocardioidaceae bacterium Broad-1]
 gi|325948270|gb|EGD40380.1| dethiobiotin synthase [Nocardioidaceae bacterium Broad-1]
          Length = 218

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 74/213 (34%), Gaps = 27/213 (12%)

Query: 108 SHRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLA-------------AGDTFRSA 153
           + R  V++V G   GVGKT     L+ +    G KV +              A +  R  
Sbjct: 3   APRGRVVIVTGTSTGVGKTVATATLASRARTNGEKVTVVKPVQTGTDDGDCDAAEIQRLT 62

Query: 154 AID--QLKIWADRTSADFVCSEIGSDAAALAYEA-FKQAQAKKVDVLIIDTAG--RLHNN 208
            I+  +L    +  + D      G +   +A  A    A  +  D+++++ AG   +  +
Sbjct: 63  GIEVHELTRLGEPLAPDTAARRAGVEIPPVAAYAPTISALTRDNDLVLVEGAGGLLVRLD 122

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
           +     +     +L    P +   V      T     L    +        GLI+    G
Sbjct: 123 TDGGTLLDLADALLVGGTPTSFVVVTAAGLGTLNHTELTVAALRARGHEPDGLIIGSWPG 182

Query: 269 TARGGGL-----IPIVVTHKIPVYFLGVGEGIN 296
               G       I +     +P+ F G+ EGI+
Sbjct: 183 DP--GLAERCNRIDLPRVTGVPLLF-GIPEGID 212


>gi|321398703|emb|CAM71844.2| putative dynein heavy chain [Leishmania infantum JPCM5]
          Length = 4241

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 71/178 (39%), Gaps = 16/178 (8%)

Query: 21   FASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDI--GVAVAQKIVEELLTKRYAK 77
                S  L + +  + +S    DD V   + + L+ SDI  G+ V +  ++    +   +
Sbjct: 1859 LQKESEILIKSLRVNTLSKLTFDDAV---IFNTLL-SDIFPGIPVLE--IDYQKLRPAIE 1912

Query: 78   DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
            +   +  L  V   I K+L        ++   +   +++VG +G GK+T++  L + +  
Sbjct: 1913 ESIKELRLQVVEAQIQKILQ------LYEALQQRMGVVLVGPSGSGKSTLMKVLRRALQR 1966

Query: 138  AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
             G KV L   +  ++   +QL    D  + ++    +   A  +  E          D
Sbjct: 1967 LGTKVPLYVVNP-KALPREQLLGHMDPDTREWFDGVLTDAARKVVKEEASARSWIVCD 2023


>gi|312379275|gb|EFR25600.1| hypothetical protein AND_08921 [Anopheles darlingi]
          Length = 615

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 27/212 (12%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSK 101
           +   EE+ D  ++ +I   + + I  E++ +           L     +I + ++ P+ +
Sbjct: 305 ESQEEEIIDERLK-NIDPKMVELIRSEIMDRFQPLSWDDIAGLEYAKTIIKEAVVWPILR 363

Query: 102 P-FNWDFSHRPHVILVVGVNGVGKTTVIGK-LSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           P         P  IL+ G  G GKT  IGK ++ +              TF         
Sbjct: 364 PDIFTGLRKPPRGILLFGPPGTGKTL-IGKCIASQSKS-----------TF-------FS 404

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
           I A   ++ ++        A  A  A  Q     +D   ID+     + +   +      
Sbjct: 405 ISASSLTSKWIGDGEKMVRALFAVAAVHQPAVVFIDE--IDSLLCQRSETEHESSRRLKT 462

Query: 220 RVLKRLD--PHAPHSVLQVLDATTGQNALRQV 249
             L +LD    A    + ++ AT     L + 
Sbjct: 463 EFLVQLDGAATAEDERILIVGATNRPQELDEA 494


>gi|307265244|ref|ZP_07546802.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919688|gb|EFN49904.1| ATP-dependent metalloprotease FtsH [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 510

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 59/173 (34%), Gaps = 21/173 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           KDV+    + D  ++I   +    K +N   +  P  IL  G  G GKT     L+  ++
Sbjct: 84  KDVAGLDEVIDELKVIIDFMTNTEK-YNKMGAKVPKGILFYGPPGTGKT----LLATALA 138

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                  ++A  +                  +       S   AL  +A K A +    +
Sbjct: 139 GETNSTFISASGS---------------EFVEKYVGVGASRIRALFAKAKKSAPSIIF-I 182

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             ID  G   N          + ++L  +D    +  + V+ AT   + L + 
Sbjct: 183 DEIDAVGTKRNTDNNSEKDQTLNQLLVEMDGFNSNEGIIVIGATNRIDMLDEA 235


>gi|288801922|ref|ZP_06407364.1| phosphoribulokinase family protein [Prevotella melaninogenica D18]
 gi|288335964|gb|EFC74397.1| phosphoribulokinase family protein [Prevotella melaninogenica D18]
          Length = 555

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 11/121 (9%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVS 89
             + ++I   ++ +  +E      I   +G+       E +   +    ++V   L +  
Sbjct: 220 SKLGELIRQDKMFEVFKEHHRWQSI---LGIKTVGDFNEAVKNGQATDLINVSEALQE-- 274

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
               K +  ++            V+L+ G +  GKTT   +LS ++  +G+K +  + D 
Sbjct: 275 ----KKISQIAD--TIAARKEIKVVLIAGPSSSGKTTFCKRLSVQLLASGVKPVQISLDD 328

Query: 150 F 150
           +
Sbjct: 329 Y 329


>gi|289191811|ref|YP_003457752.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938261|gb|ADC69016.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22]
          Length = 365

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 39/95 (41%), Gaps = 17/95 (17%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRR---LDDGVREELEDLLIRSD 57
           + +++V  E+  +I      F   S    + + ++    R   +D+    E+   L   D
Sbjct: 119 LDDREVPKEARDYI------FKKLSE--FDNLKEVAIESRPEFIDEDKLNEIRKYL---D 167

Query: 58  IGVAV---AQKIVEELLTKRYAKDVSVQRVLYDVS 89
           + V +    +   EE+  K   K ++ ++++  + 
Sbjct: 168 VNVEIGVGIESFNEEIREKAINKGITNEQIIRVIE 202


>gi|293337100|ref|NP_001168382.1| hypothetical protein LOC100382151 [Zea mays]
 gi|223947901|gb|ACN28034.1| unknown [Zea mays]
          Length = 710

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 23/201 (11%)

Query: 49  LEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           +ED  I   +G+   +++   + +K    DV          E I   L    + F     
Sbjct: 197 IEDRGISKGLGLN--EEVQPSIESKTKFSDVKGVDEAKSELEEIVHYLRDPMR-FTCLGG 253

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
             P  +L+VG  G GKT     L++ ++                A +             
Sbjct: 254 KLPKGVLLVGPPGTGKTM----LARAIAGE--------------AGVPFFSCSGSEFEEM 295

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
           FV           A    +      +D   ID  G   N          + ++L  LD  
Sbjct: 296 FVGVGARRVRDLFAAAKKRSPCIIFIDE--IDAIGGSRNPKDQQYMKMTLNQLLVELDGF 353

Query: 229 APHSVLQVLDATTGQNALRQV 249
             +  + V+ AT    +L + 
Sbjct: 354 KQNEGIIVIAATNFPESLDKA 374


>gi|145301405|ref|YP_001144244.1| putative partition protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142856287|gb|ABO92496.1| putative partition protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 209

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I+++G    G GK+T    +   ++  G  V+L   D   +AA   +    + + +   C
Sbjct: 2   IILIGSQKGGCGKSTTAVNICATLAKNGQDVVLVDADRQCTAANWAMDRSTNSSLSVVHC 61

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +   +      +       K+ + +I+D AGR    
Sbjct: 62  VQKYENIRETLQD-----LDKRYEYVIVDAAGRDSRE 93


>gi|119025112|ref|YP_908957.1| ABC transporter permease [Bifidobacterium adolescentis ATCC 15703]
 gi|118764696|dbj|BAF38875.1| probable permease protein of ABC transporter system
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 613

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 24/167 (14%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSAAIDQLKIWADRT----- 165
           + +VG  G GKTT++  L +    +G  + +   DT    R    DQ  +    T     
Sbjct: 403 VAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGIDTKSVPRWNVHDQFSMVLQDTWVFRG 462

Query: 166 ----SADFVCSEIGSDAAALAYEAFKQAQA-----KKVDVLIIDTAGRLHNNSILMAGIG 216
               +  +   ++  +    A +A              D ++ D A        L  G  
Sbjct: 463 TVRENIAYSKKDVTDEQIVAACKAVGLHHYIMSLPNGYDTVLDDKA-------SLSQGQR 515

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           +++ + + +   AP  +L    ++        ++             
Sbjct: 516 QLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSF 562


>gi|332141890|ref|YP_004427628.1| putative ABC transporter ATP-binding protein [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327551912|gb|AEA98630.1| putative ABC transporter ATP-binding protein [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 555

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +  ++ +VG NG GK+T+     + +  ++      +  GDT + AA++Q +   +  + 
Sbjct: 348 KGAIVGIVGPNGAGKSTLF----RMLTGAEQPDSGTIDLGDTVQIAAVEQFRDHMNEDNT 403

Query: 168 DFVCSEIGSDAAAL 181
            +       D   +
Sbjct: 404 VWKEISDEQDIIRI 417


>gi|261250305|ref|ZP_05942881.1| cell division protein FtsH [Vibrio orientalis CIP 102891]
 gi|260939421|gb|EEX95407.1| cell division protein FtsH [Vibrio orientalis CIP 102891]
          Length = 657

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 162 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 215

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 216 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 259

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 260 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 308


>gi|257452782|ref|ZP_05618081.1| nucleotide-binding protein [Fusobacterium sp. 3_1_5R]
 gi|317059323|ref|ZP_07923808.1| nucleotide-binding protein [Fusobacterium sp. 3_1_5R]
 gi|313684999|gb|EFS21834.1| nucleotide-binding protein [Fusobacterium sp. 3_1_5R]
          Length = 274

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 100 SKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            +     F+    VI ++ G  GVGK+TV   L+K++   G KV +  GD
Sbjct: 22  GEKNTNPFNKIKKVIGVMSGKGGVGKSTVTVLLAKELQARGYKVGILDGD 71


>gi|237785519|ref|YP_002906224.1| arginine/ornithine transport system ATPase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758431|gb|ACR17681.1| putative transport system kinase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 380

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 19/131 (14%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             EL+ K+L    K      +         GV GVGK+T I +L   + + G KV + A 
Sbjct: 81  AQELLVKLLPFSGKALRVGIT---------GVPGVGKSTFIERLGLYLVENGHKVAVLAI 131

Query: 148 D----TFR---SAAIDQLKIWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVL 197
           D      R        ++   +   +A    S        +A    E     +A   DV+
Sbjct: 132 DPSSTRSRGSILGDKTRMTKLSQSENAYIRPSPSAGTLGGVAKATRETMIVMEAAGYDVI 191

Query: 198 IIDTAGRLHNN 208
           +++T G   + 
Sbjct: 192 LVETVGVGQSE 202


>gi|296120872|ref|YP_003628650.1| ATPase AAA [Planctomyces limnophilus DSM 3776]
 gi|296013212|gb|ADG66451.1| ATPase AAA-2 domain protein [Planctomyces limnophilus DSM 3776]
          Length = 852

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 15/140 (10%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           ++  + + + VS +  +  V++ + +    L  P          V L  G  GVGKT   
Sbjct: 522 QMEAELHKRVVSQEEAIKQVAKAVRRSRSGLKDP-----KRPIGVFLFAGPTGVGKTLTA 576

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L++     G +  L   D          +       +  + +  G        +  ++
Sbjct: 577 KTLAEF--MFGEQDALVQIDMS--------EYMEKHNVSRLIGAPPGYVGYEEGGQLTEK 626

Query: 189 AQAKKVDVLIIDTAGRLHNN 208
            + +   V+++D   + H +
Sbjct: 627 IRRRPYAVVLLDEIEKAHPD 646


>gi|169632638|ref|YP_001706374.1| cell division protein [Acinetobacter baumannii SDF]
 gi|169151430|emb|CAP00165.1| cell division protein [Acinetobacter baumannii]
          Length = 631

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 25/168 (14%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  + + +++  L  P  +    +  P  +L+VG  G GKT     L+K ++        
Sbjct: 164 EAKQEVVEIVDFLKDPAKFKRLGATIPRGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 219

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           +   +                  +       S    +  +A + A      +  ID  GR
Sbjct: 220 SISGS---------------DFVEMFVGVGASRVRDMFEQAKRHAPCIIF-IDEIDAVGR 263

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                           + ++L  +D    +  + V+ AT   + L + 
Sbjct: 264 HRGSGTGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRVDVLDKA 311


>gi|146099819|ref|XP_001468756.1| dynein heavy chain [Leishmania infantum]
          Length = 4241

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 71/178 (39%), Gaps = 16/178 (8%)

Query: 21   FASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDI--GVAVAQKIVEELLTKRYAK 77
                S  L + +  + +S    DD V   + + L+ SDI  G+ V +  ++    +   +
Sbjct: 1859 LQKESEILIKSLRVNTLSKLTFDDAV---IFNTLL-SDIFPGIPVLE--IDYQKLRPAIE 1912

Query: 78   DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
            +   +  L  V   I K+L        ++   +   +++VG +G GK+T++  L + +  
Sbjct: 1913 ESIKELRLQVVEAQIQKILQ------LYEALQQRMGVVLVGPSGSGKSTLMKVLRRALQR 1966

Query: 138  AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
             G KV L   +  ++   +QL    D  + ++    +   A  +  E          D
Sbjct: 1967 LGTKVPLYVVNP-KALPREQLLGHMDPDTREWFDGVLTDAARKVVKEEASARSWIVCD 2023


>gi|115358223|ref|YP_775361.1| ATPase [Burkholderia ambifaria AMMD]
 gi|115283511|gb|ABI89027.1| ATPase AAA-2 domain protein [Burkholderia ambifaria AMMD]
          Length = 897

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 31/178 (17%)

Query: 40  RLDDGVREELEDLLIRSD-----IGVAVAQKI--VEELLTKRYAKDVSVQRVLYDVSELI 92
            +D+ +  E     I SD     +G  V  ++  V +L     A+ +     L  + E +
Sbjct: 548 EVDEAIVAE-----IVSDWTGIPVGRMVTDEVAAVRKLPETLEARVIGQTNALRQIGERV 602

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFR 151
                 L+ P          V L+ G +GVGKT T +  L++ +      ++      ++
Sbjct: 603 QTARAGLTDP-----RKPVGVFLLAGPSGVGKTETALA-LAEALYGGEQNLITINMSEYQ 656

Query: 152 SA-AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            A  +  LK            +  G           +  + +   V+++D   + H +
Sbjct: 657 EAHTVSGLK-----------GAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHRD 703


>gi|332158326|ref|YP_004423605.1| 2-phosphoglycerate kinase [Pyrococcus sp. NA2]
 gi|331033789|gb|AEC51601.1| 2-phosphoglycerate kinase [Pyrococcus sp. NA2]
          Length = 302

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----PH 112
           D+  ++A ++ EEL+ ++       +       +LI K     ++ + +    R    P 
Sbjct: 32  DLAYSIAVEVQEELIKRKKTLVTKDEIRNLTYQKLIEKGFKEEARRYLFWRRFRKMKVPL 91

Query: 113 VILVVGVNGVGKTTVIGKLSKKM 135
           +IL+ G  GVGK+T+  +L+ ++
Sbjct: 92  IILIGGPTGVGKSTIATELAFRL 114


>gi|331092356|ref|ZP_08341182.1| hypothetical protein HMPREF9477_01825 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401380|gb|EGG80966.1| hypothetical protein HMPREF9477_01825 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 578

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 20/140 (14%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           ++I+E+       K+VS         EL+  +        N     +   I +VG  G G
Sbjct: 331 KEILEKADGNVELKEVSFSY--QPDKELLKNL------NLNVKAGQK---IAIVGPTGCG 379

Query: 124 KTTVIGKLSKKM-------SDAGLKVMLAAGDTFRS--AAIDQLKIWADRTSADFVCSEI 174
           KTT+I  L +           +G  V     D+ R+    + Q       + AD +    
Sbjct: 380 KTTLINLLMRFYDIDSGKMVVSGRDVKDITKDSLRANYGMVLQETWLKSCSIADNIAYGK 439

Query: 175 GSDAAALAYEAFKQAQAKKV 194
                     A K+A A   
Sbjct: 440 PDATREEIERAAKKAFAHGF 459


>gi|325694566|gb|EGD36475.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Streptococcus sanguinis SK150]
          Length = 592

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 19/176 (10%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
           + +T +    +      + +  +L  +D +     +K+ ++L  +   KDV  Q  + D 
Sbjct: 305 QNLTQLAGQLQSAKSSLDRIFQVLDEADEVNDE-TEKLDQDLTGQVSFKDVDFQ-YVAD- 361

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                    PL + FN +      V  +VG  G GKTT+I  L +    +   + +   D
Sbjct: 362 --------KPLIRNFNLEVKPGEMV-AIVGPTGAGKTTLINLLMRFYDVSKGAITVDGHD 412

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEI------GSDAAALAYEAFKQAQAKKVDVLI 198
               +  D  K +       ++            +  A   E  + A+A  VD  I
Sbjct: 413 IRHLSRQDYRKQFGMVLQDAWLYEGTIKENLRFGNLQATDEEIVEAAKAANVDHFI 468


>gi|303253337|ref|ZP_07339486.1| hypothetical protein APP2_0648 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302648019|gb|EFL78226.1| hypothetical protein APP2_0648 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 857

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 80/207 (38%), Gaps = 17/207 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++      I  L K       + +EG  + +   ++ +   EE+ ++L ++  G+ V+
Sbjct: 494 EKMSELQYGKIPALEKQLHEAVKREEEGSENQLLRTKVTE---EEIAEVLSKA-TGIPVS 549

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNG 121
            K++E    K    +  +   +   +E +  +   + +        +RP    L +G  G
Sbjct: 550 -KMMEGEKEKLLRMEEVLHSRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTG 608

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKT +   L+  + D    +        R    + ++  +           +G +    
Sbjct: 609 VGKTELCKTLANFLFDDPDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY 661

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             EA ++   +   V+++D   + H +
Sbjct: 662 LTEAVRR---RPYSVVLLDEVEKAHPD 685


>gi|295132416|ref|YP_003583092.1| adenylylsulfate kinase [Zunongwangia profunda SM-A87]
 gi|294980431|gb|ADF50896.1| adenylylsulfate kinase [Zunongwangia profunda SM-A87]
          Length = 196

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 15/112 (13%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA-----AIDQLK 159
                RP V+   G++G GK+T+   L K++  AG    +  GD  R         DQ  
Sbjct: 18  LQKKQRPLVVWFSGLSGSGKSTLANLLEKELFTAGFHTYVLDGDNIRLGLNKDLGFDQAS 77

Query: 160 IWADRTSA----------DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
              +                +          +     +    +    + +DT
Sbjct: 78  RNENIRRIAEVCKLFLDSGLIVIAAFITPKEIDRRIIESVLGEHYIEVYVDT 129


>gi|261250366|ref|ZP_05942942.1| ClpB protein [Vibrio orientalis CIP 102891]
 gi|260939482|gb|EEX95468.1| ClpB protein [Vibrio orientalis CIP 102891]
          Length = 857

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 20/102 (19%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
           T  KL E I  +   +++DD   EEL   L          +K   +L  +    +     
Sbjct: 132 TETKLSEAIDKVRGGQKIDDPNAEELRQAL----------EKFTIDLTERA---EQGKLD 178

Query: 84  VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            +    + I + +  L +       + P +I   G  GVGKT
Sbjct: 179 PVIGRDDEIRRTIQVLQRRTK----NNPVII---GEPGVGKT 213


>gi|257868439|ref|ZP_05648092.1| ATP-dependent Clp protease [Enterococcus gallinarum EG2]
 gi|257802603|gb|EEV31425.1| ATP-dependent Clp protease [Enterococcus gallinarum EG2]
          Length = 704

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 11/134 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           + K    T  K+KE       +  +DD     E L  + + SD+G    +++ + L  + 
Sbjct: 360 IKKSIEETKQKIKETDQKEKITATIDDVAQSVERLTGIPV-SDMGANDIERL-KNLDKRL 417

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            +K +     +  V++ I +     S+      +      L VG  GVGKT +  +L+  
Sbjct: 418 KSKVIGQDEAVEMVAKAIRRNRAGFSEG-----NQPIGSFLFVGPTGVGKTELAKQLA-- 470

Query: 135 MSDAGLKVMLAAGD 148
           +   G +  +   D
Sbjct: 471 LDMFGNENAIIRLD 484


>gi|229830085|ref|ZP_04456154.1| hypothetical protein GCWU000342_02191 [Shuttleworthia satelles DSM
           14600]
 gi|229791383|gb|EEP27497.1| hypothetical protein GCWU000342_02191 [Shuttleworthia satelles DSM
           14600]
          Length = 252

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            + +SV   +  +++ I+ ++         +      VI   G +GVGK+TV   +  ++
Sbjct: 13  GEKISVTEGIIPIADRIYTVVKDYIAGRR-EVGQAKTVIAFCGGSGVGKSTVAAIVRARL 71

Query: 136 SDAGLKVMLAAGDTF--RSAAIDQLKI 160
           ++ G+     +GD +  R  A +  K 
Sbjct: 72  NEDGIGAYTMSGDNYPHRIPAFNDAKR 98


>gi|237714302|ref|ZP_04544783.1| arginine/ornithine transport system ATPase [Bacteroides sp. D1]
 gi|237719835|ref|ZP_04550316.1| arginine/ornithine transport system ATPase [Bacteroides sp. 2_2_4]
 gi|262408321|ref|ZP_06084868.1| LAO/AO transport system ATPase [Bacteroides sp. 2_1_22]
 gi|293373597|ref|ZP_06619945.1| LAO/AO transport system ATPase [Bacteroides ovatus SD CMC 3f]
 gi|294646435|ref|ZP_06724076.1| LAO/AO transport system ATPase [Bacteroides ovatus SD CC 2a]
 gi|294809080|ref|ZP_06767800.1| LAO/AO transport system ATPase [Bacteroides xylanisolvens SD CC 1b]
 gi|229445794|gb|EEO51585.1| arginine/ornithine transport system ATPase [Bacteroides sp. D1]
 gi|229451104|gb|EEO56895.1| arginine/ornithine transport system ATPase [Bacteroides sp. 2_2_4]
 gi|262353873|gb|EEZ02966.1| LAO/AO transport system ATPase [Bacteroides sp. 2_1_22]
 gi|292631422|gb|EFF50052.1| LAO/AO transport system ATPase [Bacteroides ovatus SD CMC 3f]
 gi|292638206|gb|EFF56583.1| LAO/AO transport system ATPase [Bacteroides ovatus SD CC 2a]
 gi|294443715|gb|EFG12462.1| LAO/AO transport system ATPase [Bacteroides xylanisolvens SD CC 1b]
 gi|295086626|emb|CBK68149.1| methylmalonyl-CoA mutase metallochaperone MeaB [Bacteroides
           xylanisolvens XB1A]
          Length = 365

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 40/223 (17%)

Query: 63  AQKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
             + VE ++       ++ V++   +    + + + ++    PF+ +       I + GV
Sbjct: 42  VAEFVEGIVKGDVTILSQAVTLVESVKPEHQAVSQEIIEKCLPFSGNSIR----IGISGV 97

Query: 120 NGVGKTTVI-----------GKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            G GK+T I           GKL+    D  +        GD  R   ++QL +      
Sbjct: 98  PGAGKSTSIDVFGLHVLEKGGKLAVLAIDPSSERSKGSILGDKTR---MEQLSVHPKSFI 154

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                +      A    E     +A   D + ++T G   + +                 
Sbjct: 155 RPSPSAGSLGGVARKTRETIILCEAAGFDKIFVETVGVGQSETA---------------- 198

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            H+      ++  +   + L+ ++         G+++ K DG 
Sbjct: 199 VHSMVDFFLLIQLSGTGDELQGIKRGIMEMA-DGIVINKADGD 240


>gi|226947999|ref|YP_002803090.1| ABC transporter, ATP-binding protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|226843025|gb|ACO85691.1| ABC transporter, ATP-binding protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 517

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L   +    +
Sbjct: 320 PENIIFNASNLIIGYNKPLSKPLNLKM-KRGQKIAITGANGIGKTTLIKTLLGLLKP--I 376

Query: 141 KVMLAAGDTFRSAAIDQ 157
              +   D  +    +Q
Sbjct: 377 NGEVTLSDYKKIGYFEQ 393


>gi|224122696|ref|XP_002318903.1| cc-nbs-lrr resistance protein [Populus trichocarpa]
 gi|222859576|gb|EEE97123.1| cc-nbs-lrr resistance protein [Populus trichocarpa]
          Length = 906

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           DI + + +++ E++      +            EL  + L   S       +    VI +
Sbjct: 125 DIALKI-KEVCEKVDDIAKERAKYGFDPYRATDEL--QRLTSTSFVDESSEARDVDVISL 181

Query: 117 VGVNGVGKTTVIGKLS-------KKMSDAGLKVMLAAGDTFRS--AAIDQLK 159
           VG+ G+GKTT + +L+                 +    D  R   A I+QL+
Sbjct: 182 VGLGGMGKTT-LAQLAFNDAEVTAHFEKKIWVCVSEPFDEVRIAKAIIEQLE 232


>gi|222823727|ref|YP_002575301.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Campylobacter lari RM2100]
 gi|222538949|gb|ACM64050.1| molybdopterin-guanine dinucleotide biosynthesis protein B
           [Campylobacter lari RM2100]
          Length = 159

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-----TFRSAAIDQLKIWADRTSADFV 170
             G +  GKTT+I +++K   +   KV +   D     +F  A  D  K +        +
Sbjct: 8   FSGPSNSGKTTLITQIAKHFMEQNYKVCIIKHDPKDKASFDIAKKDSFKFFQSGADVMVL 67

Query: 171 CS---EIGSDAAALAYEAFKQAQAKKVDVLII 199
                 + +   +   +A   A+    D L I
Sbjct: 68  SPTRTTLFTHYPSTLDDAI--AKLGDFDFLFI 97


>gi|212710002|ref|ZP_03318130.1| hypothetical protein PROVALCAL_01053 [Providencia alcalifaciens DSM
           30120]
 gi|212687411|gb|EEB46939.1| hypothetical protein PROVALCAL_01053 [Providencia alcalifaciens DSM
           30120]
          Length = 655

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 159 EAKEEVGEIVDFLREPARFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 214

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 215 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 258

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                           + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRADVLD 304


>gi|209965091|ref|YP_002298006.1| ATP-dependent metalloprotease FtsH [Rhodospirillum centenum SW]
 gi|209958557|gb|ACI99193.1| ATP-dependent metalloprotease FtsH [Rhodospirillum centenum SW]
          Length = 646

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 69  ELLTKRYAK----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            LLT++  +    DV+         E + + L    K F       P  +L+VG  G GK
Sbjct: 144 RLLTEKVGRVTFDDVAGIDEAKQELEEVVEFLKDPQK-FQRLGGKIPKGVLLVGPPGTGK 202

Query: 125 TTVI 128
           T   
Sbjct: 203 TLTA 206


>gi|171059773|ref|YP_001792122.1| type II secretion system protein E [Leptothrix cholodnii SP-6]
 gi|170777218|gb|ACB35357.1| type II secretion system protein E [Leptothrix cholodnii SP-6]
          Length = 578

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---FRSAAI 155
           ++       +    ++LV G  G GKTT +   +   +    +  +   +    +R A +
Sbjct: 314 VAAALRRAIAKPSGMVLVTGPTGSGKTTTL--YAALNALNNSERKIITVEDPVEYRLAGL 371

Query: 156 DQLKIWAD 163
           +Q+++   
Sbjct: 372 NQVQVHEK 379


>gi|167566863|ref|ZP_02359779.1| ClpA/B type protease [Burkholderia oklahomensis EO147]
          Length = 707

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 23/148 (15%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ + L  +   +    +  +  ++E I      L  P       +PH V L+ G +G
Sbjct: 397 VLKLADTLAERVVGQ----RHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 446

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L+  +       +      F+ A           T +    +  G     
Sbjct: 447 VGKTETALA-LADMLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 495

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                 +  + +   V+++D   + H +
Sbjct: 496 QGGVLTEAVRRRPYSVVLLDEIEKAHRD 523


>gi|165976510|ref|YP_001652103.1| ATP-dependant Clp protease chain B [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|307261568|ref|ZP_07543236.1| hypothetical protein appser12_11290 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|165876611|gb|ABY69659.1| ATP-dependant Clp protease chain B [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|306868691|gb|EFN00500.1| hypothetical protein appser12_11290 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 857

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 80/207 (38%), Gaps = 17/207 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++      I  L K       + +EG  + +   ++ +   EE+ ++L ++  G+ V+
Sbjct: 494 EKMSELQYGKIPALEKQLHEAVKREEEGSENQLLRTKVTE---EEIAEVLSKA-TGIPVS 549

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNG 121
            K++E    K    +  +   +   +E +  +   + +        +RP    L +G  G
Sbjct: 550 -KMMEGEKEKLLRMEEVLHSRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTG 608

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKT +   L+  + D    +        R    + ++  +           +G +    
Sbjct: 609 VGKTELCKTLANFLFDDPDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY 661

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             EA ++   +   V+++D   + H +
Sbjct: 662 LTEAVRR---RPYSVVLLDEVEKAHPD 685


>gi|160886825|ref|ZP_02067828.1| hypothetical protein BACOVA_04839 [Bacteroides ovatus ATCC 8483]
 gi|298480332|ref|ZP_06998530.1| LAO/AO transport system ATPase [Bacteroides sp. D22]
 gi|156107236|gb|EDO08981.1| hypothetical protein BACOVA_04839 [Bacteroides ovatus ATCC 8483]
 gi|298273613|gb|EFI15176.1| LAO/AO transport system ATPase [Bacteroides sp. D22]
          Length = 365

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 40/223 (17%)

Query: 63  AQKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
             + VE ++       ++ V++   +    + + + ++    PF+ +       I + GV
Sbjct: 42  VAEFVEGIVKGDVTILSQAVTLVESVKPEHQAVSQEIIEKCLPFSGNSIR----IGISGV 97

Query: 120 NGVGKTTVI-----------GKLSKKMSD--AGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
            G GK+T I           GKL+    D  +        GD  R   ++QL +      
Sbjct: 98  PGAGKSTSIDVFGLHVLEKGGKLAVLAIDPSSERSKGSILGDKTR---MEQLSVHPKSFI 154

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                +      A    E     +A   D + ++T G   + +                 
Sbjct: 155 RPSPSAGSLGGVARKTRETIILCEAAGFDKIFVETVGVGQSETA---------------- 198

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGT 269
            H+      ++  +   + L+ ++         G+++ K DG 
Sbjct: 199 VHSMVDFFLLIQLSGTGDELQGIKRGIMEMA-DGIVINKADGD 240


>gi|254362598|ref|ZP_04978693.1| endopeptidase ClpA [Mannheimia haemolytica PHL213]
 gi|153094206|gb|EDN75089.1| endopeptidase ClpA [Mannheimia haemolytica PHL213]
          Length = 855

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 73/207 (35%), Gaps = 18/207 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++      I  L K   +     K     ++ ++  ++ + E L         G+ VA
Sbjct: 494 EKMSELQYGVIPNLEKQLQAVENGEKNADAQLLRTKVTEEEIAEVLSKA-----TGIPVA 548

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNG 121
            K++E    K    +  +   +   +E +  +   + +        ++P    L +G  G
Sbjct: 549 -KMMEGEKEKLLRMEEVLHARVIGQNEAVDAVANAIRRSRAGLSDPNKPIGSFLFLGPTG 607

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKT +   L+  + D    +        R    + ++  +           +G +    
Sbjct: 608 VGKTELSKTLANFLFDDPDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY 660

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             EA ++       V+++D   + H +
Sbjct: 661 LTEAVRR---HPYSVVLLDEVEKAHPD 684


>gi|71905885|ref|YP_283472.1| methylmalonyl-CoA mutase, N-terminal:methylmalonyl-CoA mutase,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71845506|gb|AAZ45002.1| Methylmalonyl-CoA mutase, N-terminal:Methylmalonyl-CoA mutase,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 1116

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 41/230 (17%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHV 113
           +D GV   ++++  L           +R+L  V  L+     P  K             V
Sbjct: 183 ADEGVPTVEQVLAGLKA-------GDKRLLARVITLLENGEAPALKEPLLKAAAETNIPV 235

Query: 114 ILVVGVNGVGKTTVIGKLSKKMS----------------DAGLKVMLAAGDTFRSAAIDQ 157
           + + G  G GK+++  +L ++                            GD  R  AI+ 
Sbjct: 236 LGITGTGGAGKSSLTDELVRRFRLDQNDSVKIGLISIDPSRKRTGGALLGDRIRMNAIEH 295

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI------- 210
             I+    +     SEI      +        +    D+++++T+G    N+        
Sbjct: 296 PNIFMRSLATRDTGSEISVALPEV----IAACKLAGFDLVVVETSGIGQGNAAIVPFVDL 351

Query: 211 -LMAGIGKMIRVLKRLDPHAPHSVLQV----LDATTGQNALRQVEMFHAV 255
            L     +     +            V     D    ++ALR V   +  
Sbjct: 352 SLYVMTPEFGAASQLEKIDMLDFADFVAINKFDRKGAEDALRDVRKQYQR 401


>gi|157825298|ref|YP_001493018.1| Mrp protein [Rickettsia akari str. Hartford]
 gi|157799256|gb|ABV74510.1| Mrp protein [Rickettsia akari str. Hartford]
          Length = 320

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 68  EELLTKRYAK--DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           EE+  K   K  ++S    +  V      +   + KP +   + +  +++  G  GVGK+
Sbjct: 53  EEIRLKAINKLSEISEVNKISIVFTASKPIEQKIQKPKHIVENVKKIILVASGKGGVGKS 112

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDTF 150
           T+   +++++S    +V +   D +
Sbjct: 113 TISALIAQQLSLEKYRVGIVDADIY 137


>gi|326326028|ref|YP_004250837.1| hypothetical protein VIBNI_0088 [Vibrio nigripulchritudo]
 gi|323669079|emb|CBJ93123.1| Protein of unknown function [Vibrio nigripulchritudo]
          Length = 197

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 27/74 (36%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I   G +  GKTT+  +L+KK+      +     +  R+   + ++   D    D     
Sbjct: 5   ICFTGFSASGKTTLAKQLAKKLEFPFFSIGNTEFEISRTLGYNSIQERYDVEGIDTYAKL 64

Query: 174 IGSDAAALAYEAFK 187
           I     ++  +   
Sbjct: 65  IPYFIESIKEKCLD 78


>gi|322502793|emb|CBZ37876.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 4241

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 71/178 (39%), Gaps = 16/178 (8%)

Query: 21   FASTSLKLKEGIT-DIISSRRLDDGVREELEDLLIRSDI--GVAVAQKIVEELLTKRYAK 77
                S  L + +  + +S    DD V   + + L+ SDI  G+ V +  ++    +   +
Sbjct: 1859 LQKESEILIKSLRVNTLSKLTFDDAV---IFNTLL-SDIFPGIPVLE--IDYQKLRPAIE 1912

Query: 78   DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
            +   +  L  V   I K+L        ++   +   +++VG +G GK+T++  L + +  
Sbjct: 1913 ESIKELRLQVVEAQIQKILQ------LYEALQQRMGVVLVGPSGSGKSTLMKVLRRALQR 1966

Query: 138  AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD 195
             G KV L   +  ++   +QL    D  + ++    +   A  +  E          D
Sbjct: 1967 LGTKVPLYVVNP-KALPREQLLGHMDPDTREWFDGVLTDAARKVVKEEASARSWIVCD 2023


>gi|319953847|ref|YP_004165114.1| ATP-dependent metalloprotease ftsh [Cellulophaga algicola DSM
           14237]
 gi|319422507|gb|ADV49616.1| ATP-dependent metalloprotease FtsH [Cellulophaga algicola DSM
           14237]
          Length = 666

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 25/182 (13%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           T+   KDV+      +  E I   L    K +       P   L+VG  G GKT     L
Sbjct: 191 TRTSFKDVAGLEGAKEEVEEIVDFLRNPDK-YTSLGGKIPKGALLVGPPGTGKT----LL 245

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K ++        +   +                  +       S    L  +A +++ A
Sbjct: 246 AKAVAGEAKVPFFSLSGS---------------DFVEMFVGVGASRVRDLFKQAKEKSPA 290

Query: 192 KKVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
               +  ID  GR    + +          + ++L  +D    ++ + VL AT   + L 
Sbjct: 291 IIF-IDEIDAIGRARGKNNMTGSNDERENTLNQLLTEMDGFGTNTNVIVLAATNRADVLD 349

Query: 248 QV 249
           + 
Sbjct: 350 KA 351


>gi|300113864|ref|YP_003760439.1| ATP-dependent helicase HrpA [Nitrosococcus watsonii C-113]
 gi|299539801|gb|ADJ28118.1| ATP-dependent helicase HrpA [Nitrosococcus watsonii C-113]
          Length = 1301

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 21/156 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNGV 122
            ++ + +   R  ++    ++     E   + L  + +      + R H V+++ G  G 
Sbjct: 45  DRLTQAIEDSRLWREQRQNQLPKPAFE---QSLPVVERREEIGTAIRNHQVVILCGETGS 101

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----------ADFVCS 172
           GKTT + K+  ++   G+  M+      R AA       A   +            F   
Sbjct: 102 GKTTQLPKICLEL-GRGVAGMIGHTQPRRIAARTVANRIAKELNSDMGQIVGYKVRFHDQ 160

Query: 173 EIGSDAAALAYEAFKQAQAKK------VDVLIIDTA 202
              S    L  +    A+ +        D LIID A
Sbjct: 161 VGPSTYIKLMTDGILLAETQGDRFLDQYDTLIIDEA 196


>gi|297810479|ref|XP_002873123.1| hypothetical protein ARALYDRAFT_487170 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318960|gb|EFH49382.1| hypothetical protein ARALYDRAFT_487170 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 635

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 8/146 (5%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++E        + V+ +  L D+S    + ++P+    N        V  +VG +G GK
Sbjct: 380 KVIER-PEAIQLEKVAGEVELCDISFKYDENMLPVLDGLNLHIKAGETV-ALVGPSGGGK 437

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           TT+I  L +    +   + +   D      I  +K+ + R     V  +    +  +A  
Sbjct: 438 TTLIKLLLRLYEPSSGSIFIDKSD------IKDIKLESLRKHVGLVSQDTTLFSGTIADN 491

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI 210
              +     +D+  ++ A +  N   
Sbjct: 492 IGYRDLTTGIDMKRVELAAKTANADE 517


>gi|295398327|ref|ZP_06808369.1| ATP-dependent Clp protease [Aerococcus viridans ATCC 11563]
 gi|294973466|gb|EFG49251.1| ATP-dependent Clp protease [Aerococcus viridans ATCC 11563]
          Length = 704

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 19/149 (12%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ- 64
           + SE  +    + K    T  K+KE       +  +DD V + +E L      G+ V++ 
Sbjct: 349 IKSEDFTKAADIKKSIEETKQKIKETDQKEKITATIDD-VAQSVERL-----TGIPVSEM 402

Query: 65  --KIVEELL---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               +E L     +  +K +     +  V++ I +     S+      +      L VG 
Sbjct: 403 GANDIERLKNLDKRLKSKVIGQDEAVEMVAKAIRRNRAGFSEG-----NQPIGSFLFVGP 457

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            GVGKT +  +L+  +   G +  +   D
Sbjct: 458 TGVGKTELAKQLA--LDMFGNENAIIRLD 484


>gi|281411980|ref|YP_003346059.1| phosphoribulokinase/uridine kinase [Thermotoga naphthophila RKU-10]
 gi|281373083|gb|ADA66645.1| phosphoribulokinase/uridine kinase [Thermotoga naphthophila RKU-10]
          Length = 555

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
                 R  +IL+ G +  GKTT   +LS ++   GLK +  + D +
Sbjct: 283 EIAKDKRKQLILIAGPSSSGKTTFAKRLSLQLRVNGLKPVAISLDDY 329


>gi|170757680|ref|YP_001780362.1| ABC transporter, ATP-binding protein [Clostridium botulinum B1 str.
           Okra]
 gi|169122892|gb|ACA46728.1| ABC transporter, ATP-binding protein [Clostridium botulinum B1 str.
           Okra]
          Length = 517

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
            + ++++ S LI     PLSKP N     R   I + G NG+GKTT+I  L   +    +
Sbjct: 320 PENIIFNASNLIIGYNKPLSKPLNLKM-KRGQKIAITGANGIGKTTLIKTLLGLLKP--I 376

Query: 141 KVMLAAGDTFRSAAIDQ 157
              +   D  +    +Q
Sbjct: 377 NGEVTLSDYKKIGYFEQ 393


>gi|164688825|ref|ZP_02212853.1| hypothetical protein CLOBAR_02472 [Clostridium bartlettii DSM
           16795]
 gi|164602301|gb|EDQ95766.1| hypothetical protein CLOBAR_02472 [Clostridium bartlettii DSM
           16795]
          Length = 295

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 104 NWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           N   +    +I ++ G  GVGK+TV   +++ ++  G KV +   D
Sbjct: 34  NNPLNKIKKIIGIMSGKGGVGKSTVSALIARNLAKQGYKVGVLDAD 79


>gi|150024698|ref|YP_001295524.1| cell division protein FtsH [Flavobacterium psychrophilum JIP02/86]
 gi|149771239|emb|CAL42708.1| Cell division protein FtsH [Flavobacterium psychrophilum JIP02/86]
          Length = 643

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 25/181 (13%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K   KDV+      +  + I + L   +K  N      P   L+VG  G GKT     L+
Sbjct: 186 KTTFKDVAGLEGAKEEIQEIVEFLKNPTKYTNLG-GKIPKGALLVGPPGTGKT----LLA 240

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K ++        +   +                  +       S    L  +A  ++ + 
Sbjct: 241 KAVAGEAQVPFFSLSGS---------------DFVEMFVGVGASRVRDLFKQAKDKSPSI 285

Query: 193 KVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
              +  ID  GR      +          + ++L  +D    +S + V+ AT   + L +
Sbjct: 286 IF-IDEIDAVGRARGKGNMSGGNDERENTLNQLLTEMDGFGTNSNVIVIAATNRADVLDK 344

Query: 249 V 249
            
Sbjct: 345 A 345


>gi|120434847|ref|YP_860533.1| methylmalonyl-CoA mutase-like protein [Gramella forsetii KT0803]
 gi|117576997|emb|CAL65466.1| methylmalonyl-CoA mutase-like protein [Gramella forsetii KT0803]
          Length = 1150

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 73/215 (33%), Gaps = 32/215 (14%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E++      K+V+    L  ++E  H+         ++  +  P V+ + G  G GK+++
Sbjct: 154 EKVQENLKNKNVNTISRLISLAENRHEEFKNFFDKESFK-TQNPPVLGITGTGGSGKSSL 212

Query: 128 IGKLSKKMSD---------------AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           + +L ++                           GD  R  +I+  +++    +      
Sbjct: 213 VDELVRRFLVDFPDKHIGIVSVDPSKKKTGGALLGDRIRMNSINHERVYMRSLA----TR 268

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI--------LMAGIGKMIRVLKR 224
           +     +    EA    +A   D++I++T+G   +++         L     +     + 
Sbjct: 269 QANLALSKYVAEAVDVLKAANYDLIILETSGIGQSDTEILDHSDVSLYVMTPEFGAATQL 328

Query: 225 LDPHAPHSVLQV----LDATTGQNALRQVEMFHAV 255
                      V     D    Q+ALR V+  +  
Sbjct: 329 EKIDMLDFADLVAINKFDKRGAQDALRDVKKQYQR 363


>gi|111115078|ref|YP_709696.1| ATP-dependent protease LA [Borrelia afzelii PKo]
 gi|216263789|ref|ZP_03435783.1| ATP-dependent protease La [Borrelia afzelii ACA-1]
 gi|110890352|gb|ABH01520.1| ATP-dependent protease LA [Borrelia afzelii PKo]
 gi|215979833|gb|EEC20655.1| ATP-dependent protease La [Borrelia afzelii ACA-1]
          Length = 806

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 22/131 (16%)

Query: 26  LKLKEGITDIISSRRLDDGVREELED-LLIRSDIGVAVAQKIVE----ELLTKRYAKDVS 80
            KLK  +  +       + V +ELE   L+ +    + A+ IV     EL+T+   +D+ 
Sbjct: 283 EKLKTKLKALELKGESLEVVEKELEKFSLLET----SSAEYIVIRNYLELITELPWRDLK 338

Query: 81  VQRVLYDVSE-------------LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           +     D+ +              +   ++          + +  +IL+VG  GVGKT++
Sbjct: 339 INFDKLDLQKSKKILDKTHYGMTEVKNRIIEYISVLKLRKTQKGAIILLVGPPGVGKTSI 398

Query: 128 IGKLSKKMSDA 138
              ++K +   
Sbjct: 399 GAAIAKVLRTK 409


>gi|83308735|emb|CAJ01645.1| abc transporter atp-binding protein, similar to blr6190 of
           Bradyrhizobium japonicum [Methylocapsa acidiphila]
          Length = 249

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 13/164 (7%)

Query: 104 NWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--------RSAA 154
           +   S RP    +++G+NG GK+T+   +++  +    K+ +   D          R   
Sbjct: 22  DVSLSVRPASFCVLLGLNGAGKSTLFSLITRLYAAQSGKIKIFGWDVSRDSGEALRRLGV 81

Query: 155 IDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
           + Q +      S     +   +     A E   +A+A    + + D AG    + +    
Sbjct: 82  VFQARTLDLDLSIAQNFAYHAALHGVGAREGRARAEALLAQIGMADRAG----DKVRSLS 137

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
            G+M RV          S+L + + T G +   + ++ H V G 
Sbjct: 138 GGQMRRVEIARALLHRPSMLLLDEPTVGLDVKARADILHHVRGL 181


>gi|332140441|ref|YP_004426179.1| putative ABC transporter ATP-binding protein [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327550463|gb|AEA97181.1| putative ABC transporter ATP-binding protein [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 555

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKM--SDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           +  ++ +VG NG GK+T+     + +  ++      +  GDT + AA++Q +   +  + 
Sbjct: 348 KGAIVGIVGPNGAGKSTLF----RMLTGAEQPDSGTIDLGDTVQIAAVEQFRDHMNEDNT 403

Query: 168 DFVCSEIGSDAAAL 181
            +       D   +
Sbjct: 404 VWKEISDEQDIIRI 417


>gi|326493096|dbj|BAJ85009.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326512046|dbj|BAJ96004.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVN 120
           A+++ +++  ++  K     +   D  + + +++  L  P  F       P  IL+ G  
Sbjct: 306 AKELNKDVTPEKNVKTFKDVKGCDDAKKELEEVVEYLRNPTKFTRLGGKLPKGILLTGAP 365

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKT     L+K ++             +R+ +  +          +           +
Sbjct: 366 GTGKT----LLAKAIAGEAGVPF-----FYRAGSEFE----------EMFVGVGARRVRS 406

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           L   A K+A      +  ID  G              + ++L  +D    +  + V+ AT
Sbjct: 407 LFQAAKKKAPCIVF-IDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIIVMAAT 464

Query: 241 TGQNALR 247
              + L 
Sbjct: 465 NLPDILD 471


>gi|313894974|ref|ZP_07828533.1| LAO/AO transport system ATPase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976427|gb|EFR41883.1| LAO/AO transport system ATPase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 312

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRT--- 165
           +V+ + G  G GK+T+  K++K+    G  V + A D    F   AI   +I  +     
Sbjct: 44  YVLGITGPPGAGKSTMTDKIAKEYRKRGKTVGIIAVDPTSPFSGGAILGDRIRMNDLTLD 103

Query: 166 -SADFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNN 208
                           L++   +A K   A   D++ ++T G   + 
Sbjct: 104 EGVFIRSMGTRGSLGGLSHKTADAVKVMDAFGKDIIFVETVGVGQSE 150


>gi|312869655|ref|ZP_07729803.1| conserved hypothetical protein [Lactobacillus oris PB013-T2-3]
 gi|311094789|gb|EFQ53085.1| conserved hypothetical protein [Lactobacillus oris PB013-T2-3]
          Length = 188

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 12/127 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTSAD-- 168
           V ++ G  G GKTTV    ++ +        +    T   R    D +    +   +   
Sbjct: 7   VFVICGAAGSGKTTV----ARYLRTEFHLHRVITHTTRLPRPGERDGVDYHFETAQSMAK 62

Query: 169 ---FVCSEIGSDAAALAYEAFKQAQAKKV-DVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
                           + E   +   +   DV+++DT G +     L A +  +   + +
Sbjct: 63  LHLLEAVTYDQARYGSSLEGLAEGWQQGQDDVIVLDTKGAVTYYQQLGARVTVIFLTVSK 122

Query: 225 LDPHAPH 231
           L   A  
Sbjct: 123 LAALAHR 129


>gi|307248109|ref|ZP_07530137.1| hypothetical protein appser2_10900 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306855286|gb|EFM87461.1| hypothetical protein appser2_10900 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 864

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 80/207 (38%), Gaps = 17/207 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++      I  L K       + +EG  + +   ++ +   EE+ ++L ++  G+ V+
Sbjct: 501 EKMSELQYGKIPALEKQLHEAVKREEEGSENQLLRTKVTE---EEIAEVLSKA-TGIPVS 556

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNG 121
            K++E    K    +  +   +   +E +  +   + +        +RP    L +G  G
Sbjct: 557 -KMMEGEKEKLLRMEEVLHSRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTG 615

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKT +   L+  + D    +        R    + ++  +           +G +    
Sbjct: 616 VGKTELCKTLANFLFDDPDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY 668

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             EA ++   +   V+++D   + H +
Sbjct: 669 LTEAVRR---RPYSVVLLDEVEKAHPD 692


>gi|303250165|ref|ZP_07336367.1| hypothetical protein APP6_1581 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252723|ref|ZP_07534614.1| hypothetical protein appser6_12370 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302651228|gb|EFL81382.1| hypothetical protein APP6_1581 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859755|gb|EFM91777.1| hypothetical protein appser6_12370 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 857

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 80/207 (38%), Gaps = 17/207 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++      I  L K       + +EG  + +   ++ +   EE+ ++L ++  G+ V+
Sbjct: 494 EKMSELQYGKIPALEKQLHEAVKREEEGSENQLLRTKVTE---EEIAEVLSKA-TGIPVS 549

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNG 121
            K++E    K    +  +   +   +E +  +   + +        +RP    L +G  G
Sbjct: 550 -KMMEGEKEKLLRMEEVLHSRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTG 608

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKT +   L+  + D    +        R    + ++  +           +G +    
Sbjct: 609 VGKTELCKTLANFLFDDPDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY 661

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             EA ++   +   V+++D   + H +
Sbjct: 662 LTEAVRR---RPYSVVLLDEVEKAHPD 685


>gi|302669129|ref|YP_003832279.1| hydrogenase accessory protein HypB2 [Butyrivibrio proteoclasticus
           B316]
 gi|302396793|gb|ADL35697.1| hydrogenase accessory protein HypB2 [Butyrivibrio proteoclasticus
           B316]
          Length = 315

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 18/160 (11%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID-------QLKIWADRTSA 167
           L+ G  G GKTT I   +K ++ +G KV +   D     AI+       +L+        
Sbjct: 6   LITGFLGAGKTTFIKIYAKYLAQSGEKVCVIENDF---GAINVDMVLLKELESEGINLEM 62

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                   +    L  +    A       +II+ +G    +          I        
Sbjct: 63  IVGGDGKEAHKRRLKTKLISMA-MMGYTRVIIEPSGIFDVDEYFDLLYEDPIDRFYSAS- 120

Query: 228 HAPHSVLQVLDATTGQNALRQVEM--FHAVAGTTGLIMTK 265
               +V+ V+D+       +Q        VA    ++ ++
Sbjct: 121 ----NVIAVVDSKLCTEMSKQARYILMSEVADAGAIVFSR 156


>gi|284047260|ref|YP_003397600.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
 gi|283951481|gb|ADB54225.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
          Length = 1052

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 8/128 (6%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVM--LAAGDTFR 151
           ML  LS       +HR   +L+VG  G GKT T++ +L+  + + G      LA   + R
Sbjct: 1   MLDGLSSAQRAAVTHRGGPLLIVGGAGSGKTRTLVARLA-WLVEQGEAPESLLALALSER 59

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF-KQAQAKKVDVLIIDTAGRLHNNSI 210
           +A  D L+   + T                      ++A    +D   +   GR    ++
Sbjct: 60  AA--DALRRHVEDTVEGPYEELAVMTVHGFCARLLREEALEGGIDPFAV-AVGRADRLAM 116

Query: 211 LMAGIGKM 218
           L+  I ++
Sbjct: 117 LLERIDEL 124


>gi|282864379|ref|ZP_06273435.1| carbohydrate kinase, thermoresistant glucokinase family
           [Streptomyces sp. ACTE]
 gi|282560866|gb|EFB66412.1| carbohydrate kinase, thermoresistant glucokinase family
           [Streptomyces sp. ACTE]
          Length = 169

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           PHV++V+GV G GKTT+   L+  +      V  A GD F   A
Sbjct: 4   PHVVVVMGVAGTGKTTIGPLLAAAL-----GVPYAEGDDFHPPA 42


>gi|254826480|ref|ZP_05231481.1| ATP-dependent Clp protease [Listeria monocytogenes FSL J1-194]
 gi|254854249|ref|ZP_05243597.1| ATP-dependent Clp protease [Listeria monocytogenes FSL R2-503]
 gi|284803278|ref|YP_003415142.1| ATP-dependent endopeptidase clp ATP-binding subunit ClpL [Listeria
           monocytogenes 08-5578]
 gi|298740861|ref|YP_003727998.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Listeria
           monocytogenes]
 gi|300766211|ref|ZP_07076175.1| ATP-dependent Clp protease [Listeria monocytogenes FSL N1-017]
 gi|307069407|ref|YP_003877875.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
           monocytogenes]
 gi|258607643|gb|EEW20251.1| ATP-dependent Clp protease [Listeria monocytogenes FSL R2-503]
 gi|284058840|gb|ADB69780.1| ATP-dependent endopeptidase clp ATP-binding subunit ClpL [Listeria
           monocytogenes 08-5578]
 gi|293595719|gb|EFG03480.1| ATP-dependent Clp protease [Listeria monocytogenes FSL J1-194]
 gi|298205283|gb|ADI61846.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Listeria
           monocytogenes]
 gi|300513093|gb|EFK40176.1| ATP-dependent Clp protease [Listeria monocytogenes FSL N1-017]
 gi|306480558|emb|CBV37102.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
           monocytogenes]
 gi|306480613|emb|CBV37156.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
           monocytogenes SLCC2372]
 gi|306480677|emb|CBV37219.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
           monocytogenes]
          Length = 704

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           + K    T  K+KE       +  +DD     E L  + + SD+G    +++ + L  + 
Sbjct: 360 IKKSIEETKQKIKETDQKEKITATIDDVAQSVERLTGIPV-SDMGANDIERL-KNLDKRL 417

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            +K +     +  V++ I +     S+             L VG  GVGKT +  +L+  
Sbjct: 418 KSKVIGQDEAVEMVAKAIRRNRAGFSEG-----DQPIGSFLFVGPTGVGKTELAKQLA-- 470

Query: 135 MSDAGLKVMLAAGD 148
           +   G +  +   D
Sbjct: 471 LDMFGNENAIIRLD 484


>gi|224084778|ref|XP_002194506.1| PREDICTED: similar to
           6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2,
           partial [Taeniopygia guttata]
          Length = 662

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 29/54 (53%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           ++ P +I+++G+   GKT +  KL++ ++  G+   +     +R  A+   K +
Sbjct: 93  TNSPTLIVMIGLPARGKTYMSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSY 146


>gi|163802297|ref|ZP_02196191.1| cell division protein FtsH [Vibrio sp. AND4]
 gi|159173826|gb|EDP58640.1| cell division protein FtsH [Vibrio sp. AND4]
          Length = 658

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 159 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 212

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 213 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 256

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 257 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 305


>gi|159035965|ref|YP_001535218.1| ABC transporter related [Salinispora arenicola CNS-205]
 gi|157914800|gb|ABV96227.1| ABC transporter related [Salinispora arenicola CNS-205]
          Length = 949

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVI 128
           V EL  +         N DF   P  V+ ++G NG GKTT +
Sbjct: 649 VRELRKEYADGFVAVSNVDFEVHPGQVVGLLGPNGAGKTTTL 690


>gi|149072098|ref|YP_001293493.1| OmpR-like protein [Rhodomonas salina]
 gi|134303049|gb|ABO70853.1| OmpR-like protein [Rhodomonas salina]
          Length = 248

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 19/126 (15%)

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAG 257
           +IDT        +++     + R+L+       ++   V+ A  G+ AL  ++  +    
Sbjct: 1   MIDTLENHKEKILVVDDEASIRRILETRLSMIGYN---VVTAADGEEALNLLKKENPNLI 57

Query: 258 TTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG---------VG-E-GIND--LEPFVAK 304
              +++ K+DG    G    I     +P+  L           G E G +D  ++PF  K
Sbjct: 58  VLDIMIPKLDG---YGVCQEIRKESDVPIIMLTALGDVADRITGLELGADDYVIKPFSPK 114

Query: 305 DFSAVI 310
           +  A I
Sbjct: 115 ELEARI 120


>gi|90417679|ref|ZP_01225591.1| thymidylate kinase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337351|gb|EAS51002.1| thymidylate kinase [Aurantimonas manganoxydans SI85-9A1]
          Length = 222

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 44/148 (29%), Gaps = 14/148 (9%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAA-------GDTFR----SAAIDQLKIWADRTS 166
           G  G GKTT I +L+  +   G  V+           D  R    S A + L +  +   
Sbjct: 5   GGEGSGKTTQIARLAGHLRSEGHDVVTTREPGGSPGADALRHVILSGAAEGLGVEVEAM- 63

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
                +        L   A    +    D     T      +S L       +      D
Sbjct: 64  --LFAAARADHVDTLIRPALDAGKIVLCDRFHDSTRVYQFLDSELDQDYRDAMERAALGD 121

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHA 254
                +++  + A+ G    RQ    H+
Sbjct: 122 LLPNLTIILDVPASVGVERARQRRADHS 149


>gi|21222234|ref|NP_628013.1| ABC-transporter ATP-binding protein [Streptomyces coelicolor A3(2)]
 gi|5457259|emb|CAB46947.1| putative ABC-transporter ATP-binding component [Streptomyces
           coelicolor A3(2)]
          Length = 342

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V  V+G NG GKTT +  L+  +   G    +   D    A
Sbjct: 36  TVYGVLGPNGAGKTTTVKMLATLLRPDGGHARVFGHDVVHEA 77


>gi|153948469|ref|YP_001401473.1| AAA ATPase [Yersinia pseudotuberculosis IP 31758]
 gi|152959964|gb|ABS47425.1| ATPase, AAA family [Yersinia pseudotuberculosis IP 31758]
          Length = 880

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 80/238 (33%), Gaps = 55/238 (23%)

Query: 44  GVREELEDL-----LIRSDIGVAVAQKIV-----------------------EELLTKRY 75
            ++EEL  +     L+  D+ V     ++                         L  +  
Sbjct: 526 ALQEELVQIQGNAPLLSLDVDVRTVAAVIADWTGVPLGSLLKDEQTNLLSLENRLGERVI 585

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKK 134
            +D +    L  +++ +      L+       +    V L+VG +G+GKT T +  L+  
Sbjct: 586 GQDAA----LGALAQRLRAAKTGLTSE-----NGPLGVFLLVGPSGIGKTETALA-LADS 635

Query: 135 MSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +      ++      ++ A  + QLK            S  G           +  + + 
Sbjct: 636 LFGGEKSLITINMSEYQEAHTVSQLK-----------GSPPGYVGYGQGGVLTEAVRKRP 684

Query: 194 VDVLIIDTAGRLHNNS-ILMAG--IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
             V+++D   + H +   L         +R  +  +    ++V+ V+ A  G + L Q
Sbjct: 685 YSVVLLDEVEKAHRDVLNLFYQVFDRGFMRDGEGREIDFRNTVM-VMTANLGSDHLMQ 741


>gi|330945467|gb|EGH47024.1| general secretory pathway protein E [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 315

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 141 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQV 198


>gi|325294585|ref|YP_004281099.1| general secretory pathway protein E [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065033|gb|ADY73040.1| general secretory pathway protein E [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 531

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +   + +S + +LY   EL   +L    K F         +ILV G  G GKTT +
Sbjct: 249 ERVVLRLLSKESILYSTKEL--GLLDKEYKKFKKLIHTPHGIILVTGPTGSGKTTTL 303


>gi|320530410|ref|ZP_08031468.1| LAO/AO transport system ATPase [Selenomonas artemidis F0399]
 gi|320137243|gb|EFW29167.1| LAO/AO transport system ATPase [Selenomonas artemidis F0399]
          Length = 312

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRT--- 165
           +V+ + G  G GK+T+  K++K+    G  V + A D    F   AI   +I  +     
Sbjct: 44  YVLGITGPPGAGKSTMTDKIAKEYRKRGKTVGIIAVDPTSPFSGGAILGDRIRMNDLTLD 103

Query: 166 -SADFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNN 208
                           L++   +A K   A   D++ ++T G   + 
Sbjct: 104 EGVFIRSMGTRGSLGGLSHKTADAVKVMDAFGKDIIFVETVGVGQSE 150


>gi|310780293|ref|YP_003968625.1| phosphoribulokinase/uridine kinase [Ilyobacter polytropus DSM 2926]
 gi|309749616|gb|ADO84277.1| phosphoribulokinase/uridine kinase [Ilyobacter polytropus DSM 2926]
          Length = 488

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 15/99 (15%)

Query: 56  SDIGVAVAQKIVE-ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           SD+G A+ +KI+  E+       +    + L  +++ I K                  ++
Sbjct: 180 SDVG-ALNEKILNNEIAELIMVNEALHHKKLSFIADEIAK-------------KENVKLV 225

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V G +  GKTT   +L+  +   GLK ++ + D +   
Sbjct: 226 TVAGPSSSGKTTFTQRLAIHLRVNGLKPLVISLDNYYIG 264


>gi|308126598|ref|ZP_05911209.2| ClpX C4-type zinc finger domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308108657|gb|EFO46197.1| ClpX C4-type zinc finger domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 414

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   ++I E L      +D + + +   V     ++    +
Sbjct: 34  NDIIREEIKDVLPKKESEALPTPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDT 93

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 94  TSEGVELGKSN--ILLIGPTGSGKTLLAETLARFL 126


>gi|257466850|ref|ZP_05631161.1| nucleotide-binding protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917998|ref|ZP_07914238.1| MRP-family nucleotide-binding protein [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313691873|gb|EFS28708.1| MRP-family nucleotide-binding protein [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 274

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 100 SKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            +     F+    VI ++ G  GVGK+TV   L+K++   G KV +  GD
Sbjct: 22  GEKNTNPFNKIKKVIGVMSGKGGVGKSTVTVLLAKELQARGYKVGILDGD 71


>gi|237752882|ref|ZP_04583362.1| ATPase-ATP-dependent zn protease [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375149|gb|EEO25240.1| ATPase-ATP-dependent zn protease [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 555

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 21/172 (12%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +  E I   L    K +       P  +L+VGV GVGKT     ++K ++ 
Sbjct: 160 DVAGISEAKNELEEIIDYLR-FPKKYQDFGVRLPKGVLLVGVPGVGKT----LIAKALAG 214

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                          A+  Q+          +V           A           +D  
Sbjct: 215 EAQVPFFYQSG----ASFVQI----------YVGMGAKRVRDLFAQAKLNAPSIVFIDE- 259

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            ID  G+             + ++L  +D     S + V+ AT    +L + 
Sbjct: 260 -IDAVGKARGGMRNDEREATLNQLLTEMDGFEDSSGVIVIGATNNMESLDEA 310


>gi|198412371|ref|XP_002125638.1| PREDICTED: similar to COS1.4, partial [Ciona intestinalis]
          Length = 1010

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           F        HV +VVG  G GKTT++ K +K +S  G   ++A 
Sbjct: 645 FTVKGKKIRHV-MVVGAAGSGKTTLLAKFAK-LSLEGKIDLMAQ 686


>gi|145517722|ref|XP_001444744.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412166|emb|CAK77347.1| unnamed protein product [Paramecium tetraurelia]
          Length = 442

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 28/170 (16%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           +  L  + E++   L+   K         P  +L+ G  G GKT                
Sbjct: 192 KEQLKKLREVVEMPLLNPEKFITLGI-DPPKGVLMYGPPGTGKTLTA------------- 237

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                    R+ A      +     ++ V   +G  A  +  E F+ A+ KK  ++  D 
Sbjct: 238 ---------RAVANRTEACFIRVIGSELVQKYVGEGARMV-RELFQMARTKKACIIFFDE 287

Query: 202 ----AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                G  H++         M+ ++ +LD       ++VL AT   + L 
Sbjct: 288 IDAIGGARHDDGNDNDVQRTMLEIVNQLDGFDSRGNIKVLMATNRPDTLD 337


>gi|161520115|ref|YP_001583542.1| ABC transporter related [Burkholderia multivorans ATCC 17616]
 gi|189353706|ref|YP_001949333.1| ABC-2 type transport system ATP-binding protein [Burkholderia
           multivorans ATCC 17616]
 gi|160344165|gb|ABX17250.1| ABC transporter related [Burkholderia multivorans ATCC 17616]
 gi|189337728|dbj|BAG46797.1| ABC-2 type transport system ATP-binding protein [Burkholderia
           multivorans ATCC 17616]
          Length = 302

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR--------SAAIDQLKIWADRTSA 167
           +VG NG GK+T+I  L+  +  +  ++ +   +  R         AA+   K        
Sbjct: 64  LVGPNGAGKSTMIKLLTGLLKPSSGRISVLGHEPGRLSSQFLTQIAAVFGHKTSLWWDLP 123

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
                +       +  +AF++  A   D+L ID
Sbjct: 124 VRHSFDAIRRIYQVPVDAFREDVALFADMLHID 156


>gi|6978030|gb|AAF34248.1|AF168003_3 putative Soj [Desulfovibrio gigas]
          Length = 243

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           GVGKTT    L+  ++    K +L   DT   AA 
Sbjct: 6   GVGKTTTAVHLAAGLALNNYKTLLVDCDTQGQAAF 40


>gi|83717355|ref|YP_438342.1| ClpA/B type protease [Burkholderia thailandensis E264]
 gi|83651180|gb|ABC35244.1| ClpA/B type protease [Burkholderia thailandensis E264]
          Length = 918

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 25/134 (18%)

Query: 44  GVREELEDLL--IRSD---IGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDV-- 88
               ELE  L  ++ D   +   V + IV E+        + +    +VS  R L D   
Sbjct: 556 DALRELERALSSLQGDCAFVFPEVNEAIVAEIMSDWTGIPVGRMVTDEVSAVRALPDTLA 615

Query: 89  ------SELIHKM--LMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAG 139
                  + +H++   +  ++    D      V L+ G +GVGKT T +  L++ +    
Sbjct: 616 ARVIGQRDALHQICDRVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALA-LAEALYGGE 674

Query: 140 LKVMLAAGDTFRSA 153
             ++      ++ A
Sbjct: 675 QNLITINMSEYQEA 688


>gi|42524688|ref|NP_970068.1| flagellar biosynthesis switch protein [Bdellovibrio bacteriovorus
           HD100]
 gi|39576898|emb|CAE78127.1| flagellar biosynthesis switch protein [Bdellovibrio bacteriovorus
           HD100]
          Length = 276

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 34/188 (18%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT----------FRS-- 152
           +D      + +  G  GVGKTT++  L+  ++  G KV++  GD            R   
Sbjct: 7   FDMQRTRTISITSGKGGVGKTTLVANLALSLAQKGKKVLILDGDLGMANVDILFGVRPTG 66

Query: 153 ------AAIDQLKIWADRTSADFV------CSEIGSDAAALAYEAFKQAQAK---KVDVL 197
                 A   +++      S D             +        A  +A +      D L
Sbjct: 67  NMHDIIAGRKEMRDILMEVSKDVFLIPGGSGVVEFNHLNHFERRAMVEAVSALPLGFDYL 126

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL-------RQVE 250
           +IDTA  +  N + +    + + V+   DP +      ++     Q  +        QV 
Sbjct: 127 LIDTAPGIAENVLFLNSAAQTVSVVITPDPASFADAYALIKVLHKQYKVNHFSIICNQVR 186

Query: 251 MFHAVAGT 258
                 G 
Sbjct: 187 DEQEGLGL 194


>gi|330963968|gb|EGH64228.1| cell division protein FtsH [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 634

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++            +                  +       S    +  +
Sbjct: 201 T----LIAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|330875837|gb|EGH09986.1| general secretory pathway protein E [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 578

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++       ++   I+Q+++
Sbjct: 321 LDVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAECKIITVEDPVEYQLEGINQIQV 378


>gi|307108607|gb|EFN56847.1| hypothetical protein CHLNCDRAFT_51635 [Chlorella variabilis]
          Length = 694

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 59/167 (35%), Gaps = 16/167 (9%)

Query: 85  LYDVSELIHKMLM--PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +  E + +++        F    +  P  +L+VG  G GKT     L++ ++      
Sbjct: 155 VDEAKEELKEIVDFLKFPDKFTRLGARPPSGVLLVGPPGTGKT----LLARAVAGEADVP 210

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
             +      ++   +L +         + +    +A A+ +     A AK  D  +    
Sbjct: 211 FFSIA----ASEFVELYVGMGAMRVRELFATARKEAPAIVFIDEIDAVAKGRDSRL---- 262

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            R   N      + +++  L   D H  + V+  + AT   + L   
Sbjct: 263 -RSVGNDEREQTLNQLLTELDGFDTHRDNLVI-CIAATNRPDVLDAA 307


>gi|302387892|ref|YP_003823714.1| arsenite-activated ATPase ArsA [Clostridium saccharolyticum WM1]
 gi|302198520|gb|ADL06091.1| arsenite-activated ATPase ArsA [Clostridium saccharolyticum WM1]
          Length = 578

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
           L K  +   +    VI  +G  GVGKTT+   ++  +S  G KV L   D    AA  + 
Sbjct: 313 LRKVIDDLDTSGKKVIFTMGKGGVGKTTIAASIALGLSSRGKKVHLTTTD---PAAHLKF 369

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLII 199
            +  + +       +   +      E   +A+      DV  +
Sbjct: 370 -VMDETSGITMSHIDEKEELRRYQEEVLSKARETMSADDVAYV 411


>gi|301778215|ref|XP_002924511.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 2, axonemal-like
            [Ailuropoda melanoleuca]
          Length = 4418

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 20/107 (18%)

Query: 37   SSRRLDDGVREELEDLLIRS--DIG--------VAVAQKIVEELLTKRYAKDVSVQRVLY 86
              RRL+  + +E  ++L+ S  D+         V +   IV++L        +   ++  
Sbjct: 1991 KKRRLEPDLSDE--EVLLLSMRDMNIAKLTSVDVPLFNAIVQDLFPNIELPVIDYGKLRD 2048

Query: 87   DVSELIHKMLMPLSKPFN-------WDFSHRPHVILVVGVNGVGKTT 126
             + + I  M +  S PF        ++  +  H  ++VG  G GKTT
Sbjct: 2049 AIEQEIRDMGLQ-STPFTLTKVIQLYETKNSRHSTMIVGGTGSGKTT 2094


>gi|300711662|ref|YP_003737476.1| argK-type transport ATPase [Halalkalicoccus jeotgali B3]
 gi|299125345|gb|ADJ15684.1| argK-type transport ATPase [Halalkalicoccus jeotgali B3]
          Length = 328

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 10/106 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAI--DQLKIWADRTSA 167
           VI + G  G GK+T++ KL+K   D GL V + A D        A+  D++++ +     
Sbjct: 50  VIGITGSPGAGKSTLVDKLAKAYRDEGLTVGVIAVDPSSPYTGGAVLGDRIRMASTTGDM 109

Query: 168 DFVCSEIGSD-----AAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           D     + +       +    +A     A  +D +I++T G   N 
Sbjct: 110 DTFVRSMSARGQLGGLSTATGDAITAFDAFGIDRIIVETVGAGQNE 155


>gi|295115137|emb|CBL35984.1| Uridine kinase [butyrate-producing bacterium SM4/1]
          Length = 420

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 15/123 (12%)

Query: 30  EGITDIISSRRLDDGVREELE--DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYD 87
           E I +++  ++L D  RE  E  + L  SD+G      + E +   R  + + +Q    +
Sbjct: 85  EQIKELVPRKKLFDVQRESEEWGERLGISDVG-----SLNEAITAGRMNELILMQEAFQE 139

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
                 K +  +++        +  ++++ G +  GKTT   +LS ++   GL+    + 
Sbjct: 140 ------KKIGDIAEAVAARPDRK--LVMIAGPSSSGKTTFSRRLSIQLQALGLRPHPISV 191

Query: 148 DTF 150
           D +
Sbjct: 192 DNY 194


>gi|254881952|ref|ZP_05254662.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641045|ref|ZP_07995749.1| hypothetical protein HMPREF9011_01346 [Bacteroides sp. 3_1_40A]
 gi|254834745|gb|EET15054.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387289|gb|EFV68164.1| hypothetical protein HMPREF9011_01346 [Bacteroides sp. 3_1_40A]
          Length = 269

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTF------RSAAIDQLKIWADRTSADFVCSEI 174
           GVGKTT+    +  +   G++ ++   D        R A I   K + ++     V +  
Sbjct: 16  GVGKTTLCVTFANYLVTMGVRAVVVDCDFQHSIVKCRKADI---KKYGEQHMLYEVIAYE 72

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
            +D   +     K      +DV+++D+ G
Sbjct: 73  ATDKDGMTSLMEKLHNDPSIDVVLMDSPG 101


>gi|271965772|ref|YP_003339968.1| ABC transporter ATPase [Streptosporangium roseum DSM 43021]
 gi|270508947|gb|ACZ87225.1| ABC-type transport system, ATPase component [Streptosporangium
           roseum DSM 43021]
          Length = 305

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT--FRSAAIDQL 158
           V   +G NG GKTT I  L+  ++    +V L   D    RSAA+ Q 
Sbjct: 31  VFGFLGPNGAGKTTTIKMLAGLLTPTSGQVRLGGFDVTRQRSAAMAQF 78


>gi|313127120|ref|YP_004037390.1| lao/ao transporter ATPase [Halogeometricum borinquense DSM 11551]
 gi|312293485|gb|ADQ67945.1| LAO/AO transport system ATPase [Halogeometricum borinquense DSM
           11551]
          Length = 374

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 27/168 (16%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAI--DQLKIWADRTSA 167
           VI + G  G GK+T++ KL+K   D GL V +   D        A+  D++++ ++    
Sbjct: 58  VIGITGSPGAGKSTLVDKLAKAYRDDGLTVGVIGVDPSSPYTGGAVLGDRIRMASNVGDM 117

Query: 168 DFV-----CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
           D               +    +A K   A   D +I++T G   N               
Sbjct: 118 DVFFRSMSARGQLGGLSTATSDAVKALDAFGKDKIIVETVGAGQNE-------------- 163

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
             +D       + VL      + ++ ++      G    ++ K D   
Sbjct: 164 --VDIVRTADTVTVLVQPGSGDDVQMLKAGILEIG-DVFVVNKADMDG 208


>gi|190573712|ref|YP_001971557.1| putative cell division FtsH protein [Stenotrophomonas maltophilia
           K279a]
 gi|190011634|emb|CAQ45253.1| putative cell division FtsH protein [Stenotrophomonas maltophilia
           K279a]
          Length = 646

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 24/178 (13%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    +   L   SK F       P  +L+VG  G GKT     L+
Sbjct: 162 KVTFADVAGCDEAKEEVGELVDFLRDPSK-FTKLGGKIPRGVLMVGPPGTGKT----LLA 216

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K ++        +   +                  +       S    +  +A K A   
Sbjct: 217 KAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKKHAPCI 261

Query: 193 KVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              +  ID  GR     +          + ++L  +D       + V+ AT   + L 
Sbjct: 262 IF-IDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFEGGEGVIVIAATNRPDVLD 318


>gi|156742945|ref|YP_001433074.1| LAO/AO transport system ATPase [Roseiflexus castenholzii DSM 13941]
 gi|156234273|gb|ABU59056.1| LAO/AO transport system ATPase [Roseiflexus castenholzii DSM 13941]
          Length = 316

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 13/136 (9%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKI 160
           + R H+I V G  G GK+T++  L+      G  V + A D    F   A+      ++ 
Sbjct: 40  TGRAHIIGVTGAPGAGKSTLVTALAAHWRRTGRTVGIIAVDPTSPFTRGALLGDRIRMQA 99

Query: 161 WADRTSADFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +                  +A    +A     A   D+++I+T G        +     
Sbjct: 100 LSGDPGVFIRSMASRGRLGGIARATGDAVALLDAAGFDLVLIETVGAGQGE---VEIAAA 156

Query: 218 MIRVLKRLDPHAPHSV 233
               +    P A   +
Sbjct: 157 AHTTIVIEIPGAGDDI 172


>gi|170744038|ref|YP_001772693.1| MRP protein-like protein [Methylobacterium sp. 4-46]
 gi|168198312|gb|ACA20259.1| MRP protein-like protein [Methylobacterium sp. 4-46]
          Length = 374

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 112 HVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           HV+ V  G  GVGK+T    L+  +   GLKV L   D +
Sbjct: 112 HVVAVASGKGGVGKSTTACNLALALKAQGLKVGLLDADIY 151


>gi|147826521|emb|CAN72914.1| hypothetical protein VITISV_034007 [Vitis vinifera]
          Length = 1586

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 57   DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-----HKMLMPLSKPFNWDFSHRP 111
            DI     + I++  L +++  D+  +  ++   +LI       M +  +K F+  F+ + 
Sbjct: 1484 DIASDPEKGILK--LQEKFKLDLDDEACIHFFQDLINESPERDMGLTFTKLFSRLFAKKE 1541

Query: 112  HVILVVGVNGVGKTTVIGKLSK 133
              IL+VG++  GKTT++ KL  
Sbjct: 1542 MRILMVGLDAAGKTTILYKLKL 1563


>gi|126459985|ref|YP_001056263.1| ABC transporter related [Pyrobaculum calidifontis JCM 11548]
 gi|126249706|gb|ABO08797.1| ABC transporter related [Pyrobaculum calidifontis JCM 11548]
          Length = 246

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 10/83 (12%)

Query: 114 ILVVGVNGVGKTTVIGKLS--KKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRTSAD 168
           +LVVG NG GKTT+   L+    +   G   +          R   + Q        +  
Sbjct: 35  VLVVGPNGAGKTTLF--LAVLNLVKYRGEICVEGVCGPERVKRVGYVPQALEVGRDATVW 92

Query: 169 ---FVCSEIGSDAAALAYEAFKQ 188
              ++ ++       +A  A ++
Sbjct: 93  EYVYLPAKFRGIPPEVAKAALEE 115


>gi|145518444|ref|XP_001445094.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412538|emb|CAK77697.1| unnamed protein product [Paramecium tetraurelia]
          Length = 413

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 28/170 (16%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           +  L  + E++   L+   K         P  +L+ G  G GKT                
Sbjct: 168 KEQLKKLREVVEMPLLNPEKFITLGI-DPPKGVLMYGPPGTGKTLTA------------- 213

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                    R+ A      +     ++ V   +G  A  +  E F+ A+ KK  ++  D 
Sbjct: 214 ---------RAVANRTEACFIRVIGSELVQKYVGEGARMV-RELFQMARTKKACIIFFDE 263

Query: 202 ----AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                G  H++         M+ ++ +LD       ++VL AT   + L 
Sbjct: 264 IDAIGGARHDDGNDNDVQRTMLEIVNQLDGFDSRGNIKVLMATNRPDTLD 313


>gi|126701129|ref|YP_001090026.1| putative type IV pilus retraction protein (putative twitching
           mobility protein) [Clostridium difficile 630]
 gi|115252566|emb|CAJ70409.1| putative twitching motility protein PilT [Clostridium difficile]
          Length = 360

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 53/137 (38%), Gaps = 5/137 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + ++  GF   S ++      +  ++ +  + + + +E+    +D   + + K  E    
Sbjct: 27  VARVKGGFVKLSEQILTSEVTMQMAKDIAGESMFKVIEEHG-EAD--FSASLKTGERFRV 83

Query: 73  KRYAKDVSVQRVLYDVSELI-HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             Y +  +    +  ++  I     + L +           ++LV G  G GK+T +  +
Sbjct: 84  NAYRQKGNYAIAIRTITAEIPTFEKLGLPESIKSFTEKHKGLVLVTGPTGSGKSTTLASM 143

Query: 132 SKKMSDAGLKVMLAAGD 148
              +++   K ++   D
Sbjct: 144 INIINEKQQKHIITLED 160


>gi|28871631|ref|NP_794250.1| cell division protein FtsH [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28854883|gb|AAO57945.1| cell division protein FtsH [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 634

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++            +                  +       S    +  +
Sbjct: 201 T----LIAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|84685177|ref|ZP_01013076.1| urease accessory protein UreG [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84666909|gb|EAQ13380.1| urease accessory protein UreG [Rhodobacterales bacterium HTCC2654]
          Length = 199

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 35/195 (17%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKIWADRTSADFVC 171
           G GKTT+  +L+K + D    + +   D +         R   +   ++    T      
Sbjct: 2   GAGKTTLTAELAKALKDR-CSMAVITNDIYTQEDAEALMRMQILPADRVVGVETGGCPHT 60

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
           +     +  LA  A   A+   +D+++I++ G       L A             P    
Sbjct: 61  AIREDASINLAAVADLNARHPDLDLILIESGG-----DNLSATFS----------PELAD 105

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPI------VVTHKIP 285
             L V+D   G+   R  +   A+  +  L++ K D     G  + +       +    P
Sbjct: 106 ITLYVIDVAAGEEIPR--KGGPAITRSDLLVINKRDLAPYVGADLGVMERDATRMRAGKP 163

Query: 286 VYF--LGVGEGINDL 298
             F  L  GEG++D+
Sbjct: 164 FVFSALRHGEGVSDI 178


>gi|127513762|ref|YP_001094959.1| ATP-dependent metalloprotease FtsH [Shewanella loihica PV-4]
 gi|126639057|gb|ABO24700.1| membrane protease FtsH catalytic subunit [Shewanella loihica PV-4]
          Length = 655

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   K    DV+      +  + +   L   +K F       P  +L+VG  G GK
Sbjct: 145 KLMSEDQIKTTFGDVAGCDEAKEDVKELVDYLKEPTK-FQKLGGRIPTGVLLVGPPGTGK 203

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 204 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 244

Query: 185 AFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR                + ++L  +D    +  + V+ AT 
Sbjct: 245 AKKSAPCIIF-IDEIDAVGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN 303

Query: 242 GQNALRQV 249
             + L   
Sbjct: 304 RPDVLDAA 311


>gi|330958056|gb|EGH58316.1| peptidase M41, FtsH [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 634

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++            +                  +       S    +  +
Sbjct: 201 T----LIAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|319650253|ref|ZP_08004399.1| superfamily I DNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317398084|gb|EFV78776.1| superfamily I DNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 755

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 21/100 (21%)

Query: 30  EGITDIISSRR---LDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLY 86
           E  T  +S +R   ++DG+ +E+       DI +    ++++E L+K  +  ++      
Sbjct: 146 ESFTGHLSLKRQYMIEDGILDEIR------DIDLTTTDELLQESLSKSSSNRLT------ 193

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
              E+I  +    +K    D +     I+V G  G GKTT
Sbjct: 194 ---EIISTIQEEQNKIIRADLNKP---IIVQGAAGSGKTT 227


>gi|312199338|ref|YP_004019399.1| sulfate adenylyltransferase large subunit [Frankia sp. EuI1c]
 gi|311230674|gb|ADP83529.1| sulfate adenylyltransferase, large subunit [Frankia sp. EuI1c]
          Length = 644

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            RP VI   G++G GK+T+   + KK+ D G    L  GD  R  
Sbjct: 461 QRPAVIWFTGLSGAGKSTIANLVEKKLHDEGFHTYLLDGDNVRHG 505


>gi|294787271|ref|ZP_06752524.1| ABC transporter, permease/ATP-binding protein [Parascardovia
           denticolens F0305]
 gi|315227172|ref|ZP_07868959.1| ABC superfamily ATP binding cassette transporter, membrane protein
           [Parascardovia denticolens DSM 10105]
 gi|294484627|gb|EFG32262.1| ABC transporter, permease/ATP-binding protein [Parascardovia
           denticolens F0305]
 gi|315119622|gb|EFT82755.1| ABC superfamily ATP binding cassette transporter, membrane protein
           [Parascardovia denticolens DSM 10105]
          Length = 606

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW-DFSHRP-HVILVVGVN 120
              IV  +  K  A D+   +   D ++++ +         N  D    P   I +VG  
Sbjct: 330 TMDIVPSITNKPGAVDLPPIQGRVDFNDVVFRYENGGRNILNLVDLHVSPGKTIALVGPT 389

Query: 121 GVGKTTVIGKLSKKM 135
           G GKTT+I  LS+  
Sbjct: 390 GAGKTTIISLLSRFY 404


>gi|294816447|ref|ZP_06775090.1| chaperone [Streptomyces clavuligerus ATCC 27064]
 gi|294329046|gb|EFG10689.1| chaperone [Streptomyces clavuligerus ATCC 27064]
          Length = 860

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 79/219 (36%), Gaps = 37/219 (16%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
            ++ V+SE       L     +   +L +   +     +  D   E++ ++L  +  G+ 
Sbjct: 450 KDEAVSSEDYERAGALKARLRAAEEELAQVGEE---REQTADVTAEDIAEVL-SARTGIP 505

Query: 62  VAQ----------KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP 111
           V+Q          K+ + L  +   +D      +  VS+ + +    +  P       RP
Sbjct: 506 VSQLTETERHRLMKLEDALHERVIGQD----EAVVAVSQAVRRGRAGMGDP------DRP 555

Query: 112 HV-ILVVGVNGVGKTTVIGK-LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
               L +G  GVGK T + K L++ +           GD  R    D  +     T +  
Sbjct: 556 TGSFLFLGPTGVGK-TELAKALAQLL----------FGDADRMIRFDMSEFQEKHTVSRL 604

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           V S  G      A +  +  + K   V++ D   + H +
Sbjct: 605 VGSPPGYVGYEEAGQLTEAVRRKPYSVVLFDEVEKAHPD 643


>gi|293367533|ref|ZP_06614188.1| arsenical pump-driving ATPase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291318361|gb|EFE58752.1| arsenical pump-driving ATPase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733718|gb|EGG70045.1| putative arsenite-transporting ATPase [Staphylococcus epidermidis
           VCU028]
          Length = 574

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + I +     +K  +   + +   +  +G  GVGKTTV  +L+  +S+ G +V+LA  D
Sbjct: 309 DFIVEDHPQFNKLIDEIENSKVQYLFTMGKGGVGKTTVATQLATVLSNKGYRVLLATTD 367


>gi|222149851|ref|YP_002550808.1| ABC transporter nucleotide binding/ATPase protein [Agrobacterium
           vitis S4]
 gi|221736833|gb|ACM37796.1| ABC transporter nucleotide binding/ATPase protein [Agrobacterium
           vitis S4]
          Length = 914

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           + +VG +GVGK+T++  L+        ++     D   + A
Sbjct: 33  VALVGPDGVGKSTLLALLAGAKKIQQGRITALGADMASAGA 73


>gi|238501350|ref|XP_002381909.1| NB-ARC and TPR domain protein [Aspergillus flavus NRRL3357]
 gi|220692146|gb|EED48493.1| NB-ARC and TPR domain protein [Aspergillus flavus NRRL3357]
          Length = 660

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 2/93 (2%)

Query: 91  LIHKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           +   +L  +S   N       P  +++ G+ G GKT    + + +  +    V+  + D+
Sbjct: 253 IREGLLDQISGTLNPKAGRSGPRALVLYGIGGAGKTQTALQYAYRAREQYDAVLWISADS 312

Query: 150 FRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
               A D + + A R        E      A+A
Sbjct: 313 TVKMAQDYMAV-ARRLGVLPETQETQDAFGAMA 344


>gi|260828721|ref|XP_002609311.1| hypothetical protein BRAFLDRAFT_86771 [Branchiostoma floridae]
 gi|229294667|gb|EEN65321.1| hypothetical protein BRAFLDRAFT_86771 [Branchiostoma floridae]
          Length = 854

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            ++      +  +L  +   F       PH ILV GV G GK+T++ KL+
Sbjct: 109 ELVKVQDREMKILLQSMHDVFEQHVCPGPH-ILVKGVAGSGKSTLLSKLA 157


>gi|221057476|ref|XP_002261246.1| splicing factor [Plasmodium knowlesi strain H]
 gi|194247251|emb|CAQ40651.1| splicing factor, putative [Plasmodium knowlesi strain H]
          Length = 1142

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 15/144 (10%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            +   K  S  +   D+ +L   + +  SK    D  +  ++I++VG  G GKTT I + 
Sbjct: 424 EESKKKQKSTLQDKADLLKLKESLPIFRSKKELLDAVYNNNIIIIVGETGSGKTTQIVQ- 482

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
                D   K  +            Q +  A  + A  V  E+  +  +L     +    
Sbjct: 483 -YLYEDGYHKNGIICC--------TQPRRVAAVSVAYRVSHEMNVEIGSLVGYTIR---- 529

Query: 192 KKVDVLIIDTAGRLHNNSILMAGI 215
              D    DT  R   + IL+   
Sbjct: 530 -FEDNTTKDTKIRYVTDGILLRET 552


>gi|169145320|emb|CAQ15141.1| novel protein [Danio rerio]
          Length = 402

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 66/198 (33%), Gaps = 40/198 (20%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM---SDAGLKVMLAAGDTFRSAAIDQLKI 160
             D + +  VIL+VG    GKTT+I  +   +               +  R    DQ + 
Sbjct: 59  KKDKAKQNKVILMVGETDAGKTTLINTMVNHLLGVKFEDQAFYQITEEEQR----DQSQS 114

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG----RLHNNSILMAGIG 216
                +   V  E    +  +                 IDT G    R       +A   
Sbjct: 115 QTSEITVYEVFVEENPTSLTI-----------------IDTPGYGDARGFEKDAEIAEY- 156

Query: 217 KMIRVLKRLDP-HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG--------LIMTKMD 267
            +IR+    D  H   +V  V+ A+  + + +++ +FH+V    G         + T  D
Sbjct: 157 -LIRLFADEDGIHYIDTVCFVMKASQNRLSGKELYIFHSVLSLFGRDIQNNIVFLFTHSD 215

Query: 268 GTARGGGLIPIVVTHKIP 285
           G       +  +   +IP
Sbjct: 216 G-GPPTDALNAIEKAEIP 232


>gi|161504514|ref|YP_001571626.1| hypothetical protein SARI_02627 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865861|gb|ABX22484.1| hypothetical protein SARI_02627 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 890

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 83/258 (32%), Gaps = 56/258 (21%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREELEDL-----LIRSDIGVAVAQKIV----------- 67
            +  LK    DI     L   ++ EL  +     L+  D+ V     ++           
Sbjct: 511 LTDSLKACREDISRQEELS-ALQHELSQIQNNSPLLGLDVDVRTVATVIADWTGVPLSSL 569

Query: 68  ------------EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
                       E+L T+   +              I + +         +   +  V L
Sbjct: 570 MKDEQTELLTLEEQLATRVVGQG--------PALNAIAERMRASKTGLTPENGQQ-GVFL 620

Query: 116 VVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFR-SAAIDQLKIWADRTSADFVCSE 173
           +VG +GVGKT T +  L+  M      ++      ++    + QLK              
Sbjct: 621 LVGPSGVGKTETALA-LADVMYGGEKSLITINLSEYQEPHTVSQLKGSP--------PGY 671

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN-SILMAG--IGKMIRVLKRLDPHAP 230
           +G     +  EA    + +   V+++D   + H +   L         +R  +  +    
Sbjct: 672 VGYGQGGILTEAV---RKRPYSVVLLDEVEKAHRDVMNLFYQVFDRGFMRDGEGREIDFR 728

Query: 231 HSVLQVLDATTGQNALRQ 248
           ++V+  + +  G + L Q
Sbjct: 729 NTVIL-MTSNLGSDPLMQ 745


>gi|145551855|ref|XP_001461604.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429439|emb|CAK94231.1| unnamed protein product [Paramecium tetraurelia]
          Length = 648

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 21/171 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
            DV       +  E I + L    K +    +  P  IL+VG  G GKT     L++ ++
Sbjct: 218 NDVLGIDEFKEELEEIVEFLKN-PKKYTDSGAKLPKGILLVGPPGTGKT----LLARALA 272

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                       +      D++ +    +    +     + A ++ +          +D 
Sbjct: 273 GEAGCAFFYKSGS----EFDEMFVGVGASRVRDIFKAARAKAPSIIF----------IDE 318

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             ID+ G              + ++L  +D       + V+ AT  +  L 
Sbjct: 319 --IDSIGGRRRAQDPGYSRDTINQILTEMDGFKQTESVIVIGATNFEQVLD 367


>gi|57238619|ref|YP_179750.1| ATP/GTP-binding protein [Campylobacter jejuni RM1221]
 gi|57167423|gb|AAW36202.1| ATP/GTP-binding protein [Campylobacter jejuni RM1221]
          Length = 368

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 103/320 (32%), Gaps = 56/320 (17%)

Query: 14  IRKLTK----GFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVE 68
           + KL      GF    +       + +   ++ DDGV  ++E +   +     VA +I +
Sbjct: 6   LEKLKTVKYPGFEKDIVSF-----NFVKDIKIQDDGVFIDIEIV--SA--NPEVANEIRK 56

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
               +  +        L  ++  I +         N     +  +++  G  GVGK+T  
Sbjct: 57  N-TIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMVSSGKGGVGKSTTT 115

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+  M+  G +V +   D +               +   +  E  +    +  +  K 
Sbjct: 116 VNLAISMAKMGKRVGILDADIYGP-------------NIPRMLGETKTQP-EVVGQRLKP 161

Query: 189 AQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQV----LDATTGQ 243
                   + + + G L      LM     +++ +++L        L V    +   TG 
Sbjct: 162 ILTHG---VYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD 218

Query: 244 NALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIPIVVTHKIPVY--------FLG- 290
             +   +     AG    + T     +D + R    + +     IP+         FL  
Sbjct: 219 AQITSAQSIPITAGV--CVSTPQTVSLDDSKR---ALDMFNKLHIPIAGVIENMSGFLCP 273

Query: 291 -VGEGINDLEPFVAKDFSAV 309
             G+  +      A+D +  
Sbjct: 274 DNGKEYDIFGKGTAEDMAKA 293


>gi|329737761|gb|EGG74000.1| putative arsenite-transporting ATPase [Staphylococcus epidermidis
           VCU045]
          Length = 576

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + I +     +K  +   + +   +  +G  GVGKTTV  +L+  +S+ G +V+LA  D
Sbjct: 311 DFIVEDHPQFNKLIDEIENSKVQYLFTMGKGGVGKTTVATQLATVLSNKGYRVLLATTD 369


>gi|330921776|ref|XP_003299557.1| hypothetical protein PTT_10581 [Pyrenophora teres f. teres 0-1]
 gi|311326692|gb|EFQ92333.1| hypothetical protein PTT_10581 [Pyrenophora teres f. teres 0-1]
          Length = 699

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKM-----SDAGLKVMLAAGDTF 150
           +    R  ++L+ G  G GKTT I  LS ++             ++  D+F
Sbjct: 49  FSGKARKRLLLLKGPAGSGKTTTISLLSNELGIEMQEWKNPTGSMSTADSF 99


>gi|302670418|ref|YP_003830378.1| ABC transporter ATP-binding protein [Butyrivibrio proteoclasticus
           B316]
 gi|302394891|gb|ADL33796.1| ABC transporter ATP-binding protein [Butyrivibrio proteoclasticus
           B316]
          Length = 519

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 64  QKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
             I+E++  K   +       +  +VL++  +L+     PLS P N     R   I++ G
Sbjct: 301 MDIIEKIQEKPKPEFNFKVARTPGKVLFETKDLVIGYDEPLSSPLNITME-RGSKIVLTG 359

Query: 119 VNGVGKTT 126
            NG+GKTT
Sbjct: 360 ANGIGKTT 367


>gi|319762974|ref|YP_004126911.1| lao/ao transport system atpase [Alicycliphilus denitrificans BC]
 gi|330825054|ref|YP_004388357.1| LAO/AO transport system ATPase [Alicycliphilus denitrificans K601]
 gi|317117535|gb|ADV00024.1| LAO/AO transport system ATPase [Alicycliphilus denitrificans BC]
 gi|329310426|gb|AEB84841.1| LAO/AO transport system ATPase [Alicycliphilus denitrificans K601]
          Length = 335

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 24/156 (15%)

Query: 70  LLTKRYAK-----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +  +  AK     + +          L+ ++L    +      S         GV GVGK
Sbjct: 17  VRRRAMAKAITLLESTRPDHRAQADALLTELLPHTGRALRLGIS---------GVPGVGK 67

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRTSA-------DFVCSEI 174
           +T I  L   +   GLKV + A D   +    +I   K   +R S               
Sbjct: 68  STFIEALGIYLIGQGLKVAVLAIDPSSSVSGGSILGDKTRMERLSMQENAYIRPSPSGGT 127

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
               A    E+    +A   DV+I++T G   + + 
Sbjct: 128 LGGVAEKTRESLLVCEAAGYDVVIVETVGVGQSETA 163


>gi|260768946|ref|ZP_05877880.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           furnissii CIP 102972]
 gi|260616976|gb|EEX42161.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           furnissii CIP 102972]
 gi|315180642|gb|ADT87556.1| ATP-dependent protease ATP-binding subunit [Vibrio furnissii NCTC
           11218]
          Length = 426

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSDI-GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   ++I E L      ++ + + +   V     ++    +
Sbjct: 46  NDIIREEIKDVLPKKESSALPTPREIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDT 105

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 106 TSEGVELGKSN--ILLIGPTGSGKTLLAETLARFL 138


>gi|260555510|ref|ZP_05827731.1| ClpV1 family type VI secretion ATPase [Acinetobacter baumannii ATCC
           19606]
 gi|260412052|gb|EEX05349.1| ClpV1 family type VI secretion ATPase [Acinetobacter baumannii ATCC
           19606]
          Length = 896

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 59  GVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           G+ V + + +E+        +  + V  Q   Y +++L+  +    SK    D +    V
Sbjct: 557 GIPVGKMVNDEIKQILTLEDKLGERVMGQD--YALTQLVQGI--KTSKAKLEDPNKPQGV 612

Query: 114 ILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            L+VG +GVGKT T +  L+ ++      ++              +  + +  +   +  
Sbjct: 613 FLLVGPSGVGKTETALA-LANELYGGEQHLITIN-----------MSEYQEAHTVSSLKG 660

Query: 173 EIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                          +A  +    V+++D   + H++   +         L+  +     
Sbjct: 661 APPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVID 720

Query: 232 --SVLQVLDATTGQNALRQV 249
             +   +L + TG +A+ Q 
Sbjct: 721 FKNTTILLTSNTGSSAIMQA 740


>gi|260575322|ref|ZP_05843322.1| LAO/AO transport system ATPase [Rhodobacter sp. SW2]
 gi|259022582|gb|EEW25878.1| LAO/AO transport system ATPase [Rhodobacter sp. SW2]
          Length = 327

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 87/235 (37%), Gaps = 45/235 (19%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYD-----VSELIHKMLMPLSKPFNWDFSHRP 111
           D+   +A+ ++     +  A+ +++     D        L+ ++     +      S  P
Sbjct: 2   DVS-DLARSVIAGDR-RALARAITLVESRRDDHRAAARSLLAEVQAAGRQALRIGLSGTP 59

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAI-----DQLKIWADR 164
                    GVGK+T+I  L   ++  GL+V + A D  + RS         +++  +  
Sbjct: 60  ---------GVGKSTLIESLGLLLTAQGLRVAVLAVDPSSARSGGSILGDKTRMERLSRD 110

Query: 165 TSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             A    S   +    +A    EA    +A   DV++I+T G   + +++          
Sbjct: 111 PLAFIRPSPSQTQLGGVARRSREAVALCEAAGFDVVLIETVGVGQSETMVAELC------ 164

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEM-FHAVAGTTGLIMTKMDGTARGGGL 275
                      +  +L A  G + L+ V+     +A    +++ K DG  +   L
Sbjct: 165 ----------DIFVLLLAPAGGDELQGVKRGIMEMADL--ILVNKADGDLKPAAL 207


>gi|242071913|ref|XP_002451233.1| hypothetical protein SORBIDRAFT_05g026180 [Sorghum bicolor]
 gi|241937076|gb|EES10221.1| hypothetical protein SORBIDRAFT_05g026180 [Sorghum bicolor]
          Length = 978

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 11/120 (9%)

Query: 14  IRKLTKGFAST--SLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE-EL 70
           ++K+ K F+       +   I DI   +RLDD + E       + D  +A A  I++  L
Sbjct: 102 LKKMGKVFSKAKARRSIAGAIEDI--KKRLDD-IAE--RRQRYKLDEKIAAAPTIIDPRL 156

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           +     K+VS    +    + +  ML  L    +         + +VGV G+GKTT + K
Sbjct: 157 I--ATYKEVSQLIGVDKSRDDLISMLNLLQPDDDAPDKKITKKVSIVGVGGLGKTT-VAK 213


>gi|227550338|ref|ZP_03980387.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Enterococcus
           faecium TX1330]
 gi|257886428|ref|ZP_05666081.1| ATPase [Enterococcus faecium 1,231,501]
 gi|257897428|ref|ZP_05677081.1| ATP-dependent Clp protease [Enterococcus faecium Com12]
 gi|257900263|ref|ZP_05679916.1| ATP-dependent Clp protease [Enterococcus faecium Com15]
 gi|227180540|gb|EEI61512.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Enterococcus
           faecium TX1330]
 gi|257822284|gb|EEV49414.1| ATPase [Enterococcus faecium 1,231,501]
 gi|257833993|gb|EEV60414.1| ATP-dependent Clp protease [Enterococcus faecium Com12]
 gi|257838175|gb|EEV63249.1| ATP-dependent Clp protease [Enterococcus faecium Com15]
          Length = 704

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           + K    T  K+KE       +  +DD     E L  + + SD+G    +++ + L  + 
Sbjct: 360 IKKSIEETKQKIKETDQKEKITATIDDVAQSVERLTGIPV-SDMGANDIERL-KNLDKRL 417

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            +K +     +  V++ I +     S+             L VG  GVGKT +  +L+  
Sbjct: 418 KSKVIGQDEAVEMVAKAIRRNRAGFSEG-----DQPIGSFLFVGPTGVGKTELAKQLA-- 470

Query: 135 MSDAGLKVMLAAGD 148
           +   G +  +   D
Sbjct: 471 LDMFGNENAIIRLD 484


>gi|254469689|ref|ZP_05083094.1| ABC transporter ATP-binding protein [Pseudovibrio sp. JE062]
 gi|211961524|gb|EEA96719.1| ABC transporter ATP-binding protein [Pseudovibrio sp. JE062]
          Length = 249

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVI-LVVGVNGVGKTTVIGKLSKK 134
           +HK    L    N +   +P+ I  ++G NG GK+T+IG+++  
Sbjct: 11  LHKNFGALQASKNVNLDLKPNEIHALIGPNGAGKSTLIGQIAGW 54


>gi|254436354|ref|ZP_05049860.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
 gi|207088044|gb|EDZ65317.1| ATP-dependent metallopeptidase HflB subfamily [Nitrosococcus oceani
           AFC27]
          Length = 638

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 53/178 (29%), Gaps = 24/178 (13%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +  + + + L    + F       P  +L+VG  G GKT     L+
Sbjct: 149 KVTFSDVAGCDEAKEEVQELVEFLREPGR-FQKLGGKIPRGVLMVGPPGTGKT----LLA 203

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           + ++            +                  +       S    +   A K A   
Sbjct: 204 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFENAKKHAPCI 248

Query: 193 KVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              +  ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 249 IF-IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLD 305


>gi|168030360|ref|XP_001767691.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681011|gb|EDQ67442.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 338

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 25/148 (16%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            Q+ VE+   ++  KDV+ Q       E + + L    +  N      PH +L  G  G 
Sbjct: 8   TQQWVEKYRPRKV-KDVAHQ-------EEVVRTLTNTLETGNL-----PH-LLFYGPPGT 53

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKTT    L+      G ++        R   ++     +D    + V ++I   A    
Sbjct: 54  GKTTTA--LAICHQLFGPELYKT-----RVLELN----ASDDRGINVVRTKIKDFAGVAV 102

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
                        VLI+D A  +  ++ 
Sbjct: 103 GAGVSGYPCPPFKVLILDEADSMTEDAQ 130


>gi|146275817|ref|YP_001165977.1| cobyrinic acid a,c-diamide synthase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|145322508|gb|ABP64451.1| Cobyrinic acid a,c-diamide synthase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 400

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           + ++L         D      V    G  GVGK+TV   L+   +  G +V++   D+ 
Sbjct: 89  MREVLGASPARAPMDVPAIIAVQNFKG--GVGKSTVTTHLAHYFAVQGYRVLVVDCDSQ 145


>gi|77166027|ref|YP_344552.1| peptidase M41, FtsH [Nitrosococcus oceani ATCC 19707]
 gi|76884341|gb|ABA59022.1| membrane protease FtsH catalytic subunit [Nitrosococcus oceani ATCC
           19707]
          Length = 641

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 53/178 (29%), Gaps = 24/178 (13%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +  + + + L    + F       P  +L+VG  G GKT     L+
Sbjct: 152 KVTFSDVAGCDEAKEEVQELVEFLREPGR-FQKLGGKIPRGVLMVGPPGTGKT----LLA 206

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           + ++            +                  +       S    +   A K A   
Sbjct: 207 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFENAKKHAPCI 251

Query: 193 KVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              +  ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 252 IF-IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLD 308


>gi|62955057|ref|NP_001017540.1| adenylate kinase 5, like [Danio rerio]
 gi|62089505|gb|AAH92184.1| Zgc:113368 [Danio rerio]
 gi|169146141|emb|CAQ13849.1| novel protein (zgc:113368) [Danio rerio]
          Length = 335

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             RPH+I ++G  G GK T   K++ + 
Sbjct: 131 KPRPHIIFIIGGPGSGKGTQTAKIALRY 158


>gi|71399827|ref|XP_802884.1| ADP-ribosylation factor [Trypanosoma cruzi strain CL Brener]
 gi|70865182|gb|EAN81438.1| ADP-ribosylation factor, putative [Trypanosoma cruzi]
          Length = 164

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLS 132
             FS++   IL +G++  GKTT++GKL+
Sbjct: 14  LGFSNKTGKILFLGLDNAGKTTLLGKLA 41


>gi|315173035|gb|EFU17052.1| ATPase family protein [Enterococcus faecalis TX1346]
          Length = 704

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           + K    T  K+KE       +  +DD     E L  + + SD+G    +++ + L  + 
Sbjct: 360 IKKSIEETKQKIKETDQKEKITATIDDVAQSVERLTGIPV-SDMGANDIERL-KNLDKRL 417

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            +K +     +  V++ I +     S+             L VG  GVGKT +  +L+  
Sbjct: 418 KSKVIGQDEAVEMVAKAIRRNRAGFSEG-----DQPIGSFLFVGPTGVGKTELAKQLA-- 470

Query: 135 MSDAGLKVMLAAGD 148
           +   G +  +   D
Sbjct: 471 LDMFGNENAIIRLD 484


>gi|293563302|ref|ZP_06677752.1| ClpE [Enterococcus faecium E1162]
 gi|294614986|ref|ZP_06694875.1| ClpE [Enterococcus faecium E1636]
 gi|294619076|ref|ZP_06698571.1| ClpE [Enterococcus faecium E1679]
 gi|294621371|ref|ZP_06700543.1| ClpE [Enterococcus faecium U0317]
 gi|291592117|gb|EFF23737.1| ClpE [Enterococcus faecium E1636]
 gi|291594737|gb|EFF26119.1| ClpE [Enterococcus faecium E1679]
 gi|291599018|gb|EFF30063.1| ClpE [Enterococcus faecium U0317]
 gi|291604754|gb|EFF34238.1| ClpE [Enterococcus faecium E1162]
          Length = 698

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 19/145 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + + ++L      +D +V R    V++ I +  + L+K      S      L VG  GVG
Sbjct: 386 KNLADDLKAHVIGQDNAVDR----VAKAIRRNRVGLNKQNRPIGS-----FLFVGPTGVG 436

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KT +  +L+ ++   G +  +   D          +     + +  + S  G      A 
Sbjct: 437 KTELAKQLAYEL--FGSQDSMIRFDMS--------EYMEKHSVSKLIGSPPGYVGYEEAG 486

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNN 208
           +  ++ +     ++++D   + H +
Sbjct: 487 QLTEKVRRNPYSLVLLDEVEKAHPD 511


>gi|262394814|ref|YP_003286668.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           Ex25]
 gi|262338408|gb|ACY52203.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio sp.
           Ex25]
          Length = 426

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   ++I E L      +D + + +   V     ++    +
Sbjct: 46  NDIIREEIKDVLPKKESEALPTPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDT 105

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 106 TSEGVELGKSN--ILLIGPTGSGKTLLAETLARFL 138


>gi|288947751|ref|YP_003445134.1| AAA ATPase [Allochromatium vinosum DSM 180]
 gi|288898267|gb|ADC64102.1| AAA ATPase [Allochromatium vinosum DSM 180]
          Length = 328

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 28/163 (17%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           + G +G GKT     +++ ++  G    +A  DT R  + +          A        
Sbjct: 16  LCGPSGSGKTYSALLIAQGLAPGGK---IALIDTER-GSGELYADLTAYDVAPLNPPYTP 71

Query: 176 SDAAALAYEAFKQAQAKKVDVLIID--------------------TAGRLHNNSILMAGI 215
           +    +     K A++   DVLIID                    +A R  N+      +
Sbjct: 72  TRYIEI----IKAAESAGYDVLIIDSLSHAWTGEGGVLEMHDRATSASRSGNSFAAWREV 127

Query: 216 GKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGT 258
                 L      A   ++  +   T  + +   +        
Sbjct: 128 TPHHNALVDAIIGANLHIIVTMRTKTAYDMVDDGKGGKKPVKI 170


>gi|256372377|ref|YP_003110201.1| ATP-dependent metalloprotease FtsH [Acidimicrobium ferrooxidans DSM
           10331]
 gi|310943114|sp|C7M0M0|FTSH_ACIFD RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|256008961|gb|ACU54528.1| ATP-dependent metalloprotease FtsH [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 660

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 24/180 (13%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K    DV+  + +    + +   L   S+ F+   +  P  IL+VG  G GKT     
Sbjct: 167 RPKTTFDDVAGYQGVKGEVKEVVDFLRDPSR-FSQLGARIPKGILLVGPPGTGKT----L 221

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ ++                A +  + +        FV                +   
Sbjct: 222 LARAVAGE--------------AGVPFMSVSGSDFMEMFVGVGAARVRDLFQTARRQSPS 267

Query: 191 AKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              +D   ID+ GR     +          + ++L  +D   P   + V+ AT   + L 
Sbjct: 268 IIFIDE--IDSIGRKRGTGLGGGHDEREQTLNQMLSEMDGFDPAEGIVVMAATNRPDILD 325


>gi|308234899|ref|ZP_07665636.1| ABC transporter, ATP-binding protein [Gardnerella vaginalis ATCC
           14018]
 gi|311114178|ref|YP_003985399.1| ABC transporter membrane protein [Gardnerella vaginalis ATCC 14019]
 gi|310945672|gb|ADP38376.1| ABC superfamily ATP binding cassette transporter, membrane protein
           [Gardnerella vaginalis ATCC 14019]
          Length = 598

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW-DFSHRP-HVILVVGVNGVGKTT 126
            ++ K  AK++   +   DV++++ +         N  D    P   + +VG  G GKTT
Sbjct: 336 NIVDKSDAKELPQIKGRVDVNDVVFRYEENGKPILNLVDLHIEPGTTVALVGPTGAGKTT 395

Query: 127 VIGKLSKKM 135
           ++  LS+  
Sbjct: 396 LVSLLSRFY 404


>gi|193076989|gb|ABO11735.2| putative ClpA/B-type chaperone [Acinetobacter baumannii ATCC 17978]
          Length = 892

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 59  GVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           G+ V + + +E+        +  + V  Q   Y +++L+  +    SK    D +    V
Sbjct: 553 GIPVGKMVNDEIKQILTLEDKLGERVMGQD--YALTQLVQGI--KTSKAKLEDPNKPQGV 608

Query: 114 ILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            L+VG +GVGKT T +  L+ ++      ++              +  + +  +   +  
Sbjct: 609 FLLVGPSGVGKTETALA-LANELYGGEQHLITIN-----------MSEYQEAHTVSSLKG 656

Query: 173 EIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                          +A  +    V+++D   + H++   +         L+  +     
Sbjct: 657 APPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVID 716

Query: 232 --SVLQVLDATTGQNALRQV 249
             +   +L + TG +A+ Q 
Sbjct: 717 FKNTTILLTSNTGSSAIMQA 736


>gi|169796443|ref|YP_001714236.1| putative ClpA/B-type chaperone [Acinetobacter baumannii AYE]
 gi|169149370|emb|CAM87254.1| putative ClpA/B-type chaperone [Acinetobacter baumannii AYE]
          Length = 896

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 59  GVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           G+ V + + +E+        +  + V  Q   Y +++L+  +    SK    D +    V
Sbjct: 557 GIPVGKMVNDEIKQILTLEDKLGERVMGQD--YALTQLVQGI--KTSKAKLEDPNKPQGV 612

Query: 114 ILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            L+VG +GVGKT T +  L+ ++      ++              +  + +  +   +  
Sbjct: 613 FLLVGPSGVGKTETALA-LANELYGGEQHLITIN-----------MSEYQEAHTVSSLKG 660

Query: 173 EIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                          +A  +    V+++D   + H++   +         L+  +     
Sbjct: 661 APPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVID 720

Query: 232 --SVLQVLDATTGQNALRQV 249
             +   +L + TG +A+ Q 
Sbjct: 721 FKNTTILLTSNTGSSAIMQA 740


>gi|154411858|ref|XP_001578963.1| DNA-directed RNA polymerase, omega subunit family protein
            [Trichomonas vaginalis G3]
 gi|121913165|gb|EAY17977.1| DNA-directed RNA polymerase, omega subunit family protein
            [Trichomonas vaginalis G3]
          Length = 6833

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 24   TSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQR 83
            T  ++K+ + D       D+ + + LED +I  DIG  +A+ +V+ LL   +  ++  Q 
Sbjct: 1598 TDEQIKDKLGDKADGLSKDEAM-KALEDQMI-GDIGSKLAESLVDRLLNDYHENELISQM 1655

Query: 84   VLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
            V   ++ ++  +L  +          +     + 
Sbjct: 1656 VREAINAMVKDILAKMKDEDAEKIIQQVSASAMA 1689


>gi|3170230|gb|AAC18055.1| fructose-6-phosphate 2-kinase /fructose-2,6-bisphosphatase
           [Spinacia oleracea]
          Length = 750

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 64/201 (31%), Gaps = 28/201 (13%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR--SAAIDQLKIWADRTSADFVC 171
           I++VG+   GKT    KL++ +   G          +R      +Q   +    + +   
Sbjct: 351 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKLGTNQSAEFFRGDNTE--G 408

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIID----TAGRLHNNSILMAGIGKMI-------- 219
            E  ++ AALA E       +   V I D    T  R +    L  G  K+I        
Sbjct: 409 IEARNEVAALAMEDMISWMQEGGQVGIFDATNSTRERRNMLMKLAEGNCKIIFLETLCYD 468

Query: 220 -RVLKRLD-------PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
            R+++R         P               +  L   E  +        I   +D  + 
Sbjct: 469 ERIIERNIRLKVQQSPDYAEQPDFEAGYRDFKRRLDNYEKVYEPVEEGSYI-KMIDTVSG 527

Query: 272 GGGLIPIVVTHK-IP--VYFL 289
            GG I +      +P  + F 
Sbjct: 528 NGGQIQVNNISGYLPGRIVFF 548


>gi|31541923|ref|NP_598584.2| methylmalonic aciduria type A homolog, mitochondrial precursor [Mus
           musculus]
 gi|38258077|sp|Q8C7H1|MMAA_MOUSE RecName: Full=Methylmalonic aciduria type A homolog, mitochondrial;
           Flags: Precursor
 gi|26340974|dbj|BAC34149.1| unnamed protein product [Mus musculus]
 gi|148678922|gb|EDL10869.1| methylmalonic aciduria (cobalamin deficiency) type A, isoform CRA_a
           [Mus musculus]
 gi|148678923|gb|EDL10870.1| methylmalonic aciduria (cobalamin deficiency) type A, isoform CRA_a
           [Mus musculus]
          Length = 415

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 78/233 (33%), Gaps = 48/233 (20%)

Query: 64  QKIVEEL-----------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           Q+ V+ L           L +      S      ++++++ + ++ L +        +P 
Sbjct: 80  QRFVDRLYTGLVKGQRACLAEAITLVESTHTRKRELAQVLLQRVLALQREQELRNQGKPL 139

Query: 113 VILV--VGVNGVGKTTVI---GKLSKKMSDAGLKVMLAAGDTFR-------SAAIDQLKI 160
              V   G  G GK+T I   GK+   +++ G ++ + A D               ++  
Sbjct: 140 TFRVGLSGPPGAGKSTFIECFGKM---LTEQGHRLSVLAVDPSSCTSGGSLLGDKTRMIE 196

Query: 161 WADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +   +A    S        +     EA    +    D+++I+T G   +          
Sbjct: 197 LSRDMNAYIRPSPTSGTLGGVTRTTNEAIVLCEGGGYDIILIETVGVGQSE--------- 247

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM-FHAVAGTTGLIMTKMDGT 269
                           + +L    G + L+ ++     +A    +++TK DG 
Sbjct: 248 ------FAVADMVDMFVLLLPP-AGGDELQGIKRGIIEMADL--VVITKSDGD 291


>gi|109896796|ref|YP_660051.1| putative GAF sensor protein [Pseudoalteromonas atlantica T6c]
 gi|109699077|gb|ABG38997.1| putative GAF sensor protein [Pseudoalteromonas atlantica T6c]
          Length = 736

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 95  MLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVI 128
            L P +         +PH IL VVG  G GKTT +
Sbjct: 463 NLSPANNQSILRMIEKPHGILLVVGPTGSGKTTTL 497


>gi|304437862|ref|ZP_07397810.1| lon family ATP-dependent protease [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369162|gb|EFM22839.1| lon family ATP-dependent protease [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 718

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 24/125 (19%)

Query: 26  LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELL-TKRYAKDVSVQRV 84
            ++ E +  I++ R L+D +  ++ + L   D        I  +++  +    +    + 
Sbjct: 95  SRMTEQVAGILARRDLEDRIERKVNEKL-EKD-HEEYVDDIRRQVISEESPGAESPHDKK 152

Query: 85  LYDVSELIHKM-----LMPLSKPFNWD----------------FSHRPHVILVVGVNGVG 123
             +  E + K+     +M L +P  +D                 S  P  +L+ G  GVG
Sbjct: 153 KREALEALEKVHLTQSVMELLRPKTFDEIVGQERAVRSLMAKLSSPYPQHLLLYGPPGVG 212

Query: 124 KTTVI 128
           KTT  
Sbjct: 213 KTTAA 217


>gi|283787019|ref|YP_003366884.1| T6SS protein Cts2V [Citrobacter rodentium ICC168]
 gi|282950473|emb|CBG90136.1| T6SS protein Cts2V [Citrobacter rodentium ICC168]
          Length = 835

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 10/97 (10%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + +VE +  +   +            E I + L         D      V L+VG  GVG
Sbjct: 567 RTLVERMSERVMGQ--------RAALETIARRLRAYRSGLT-DPQKPVGVFLLVGPTGVG 617

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLK 159
           KT     L+  +      ++      ++ A  + QLK
Sbjct: 618 KTETAYALADALYGGERNLITINLSEYQEAHTVSQLK 654


>gi|237745419|ref|ZP_04575899.1| ATP-dependent helicase [Oxalobacter formigenes HOxBLS]
 gi|229376770|gb|EEO26861.1| ATP-dependent helicase [Oxalobacter formigenes HOxBLS]
          Length = 1303

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 69/207 (33%), Gaps = 31/207 (14%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS------HRPHVILVVGVNG 121
           E L  K  +   S Q         +  ++ P   P +           +  VI+V G  G
Sbjct: 9   ESLSKKPRSSRQSKQATAKIERPPVPAIVYPEELPVSAKRHEIARAIQKHQVIVVCGETG 68

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----------ADFVC 171
            GKTT + K+  ++   G   ++      R AAI      A   +            F  
Sbjct: 69  SGKTTQLPKICLEL-GRGRTGLIGHTQPRRIAAITTANRIARELNSPPGEVVGYKIRFTD 127

Query: 172 SEIGSDAAALAYEAFKQAQAKK------VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
                 +  L  +    A+ +        D +IID A     N      I  ++  LK+L
Sbjct: 128 KTGPKASIKLMTDGILLAETQNDRLLEQYDTIIIDEAHERSLN------IDFLLGYLKKL 181

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMF 252
            P  P   L+V+  +   +A R    F
Sbjct: 182 LPERPD--LKVIITSATIDAERFARHF 206


>gi|301512287|ref|ZP_07237524.1| type VI secretion ATPase, ClpV1 family protein [Acinetobacter
           baumannii AB058]
 gi|301596124|ref|ZP_07241132.1| type VI secretion ATPase, ClpV1 family protein [Acinetobacter
           baumannii AB059]
 gi|332865710|ref|ZP_08436520.1| type VI secretion ATPase, ClpV1 family [Acinetobacter baumannii
           6013113]
 gi|332735137|gb|EGJ66219.1| type VI secretion ATPase, ClpV1 family [Acinetobacter baumannii
           6013113]
          Length = 892

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 59  GVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           G+ V + + +E+        +  + V  Q   Y +++L+  +    SK    D +    V
Sbjct: 553 GIPVGKMVNDEIKQILTLEDKLGERVMGQD--YALTQLVQGI--KTSKAKLEDPNKPQGV 608

Query: 114 ILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            L+VG +GVGKT T +  L+ ++      ++              +  + +  +   +  
Sbjct: 609 FLLVGPSGVGKTETALA-LANELYGGEQHLITIN-----------MSEYQEAHTVSSLKG 656

Query: 173 EIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                          +A  +    V+++D   + H++   +         L+  +     
Sbjct: 657 APPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVID 716

Query: 232 --SVLQVLDATTGQNALRQV 249
             +   +L + TG +A+ Q 
Sbjct: 717 FKNTTILLTSNTGSSAIMQA 736


>gi|237808996|ref|YP_002893436.1| ATP-dependent metalloprotease FtsH [Tolumonas auensis DSM 9187]
 gi|237501257|gb|ACQ93850.1| ATP-dependent metalloprotease FtsH [Tolumonas auensis DSM 9187]
          Length = 641

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      +  + +   L   S+ F       P  IL+VG  G GKT     L+K ++ 
Sbjct: 153 DVAGCDEAKEEVKELVDYLRDPSR-FQKLGGKIPKGILMVGQPGTGKT----LLAKAIAG 207

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                  +   +                  +       S    +  +A K +      + 
Sbjct: 208 EAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKKASPCIIF-ID 251

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR     +          + ++L  +D    H  + V+ AT   + L 
Sbjct: 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGHEAIIVIAATNRPDVLD 304


>gi|254521600|ref|ZP_05133655.1| ATP-dependent zinc-metallo protease [Stenotrophomonas sp. SKA14]
 gi|219719191|gb|EED37716.1| ATP-dependent zinc-metallo protease [Stenotrophomonas sp. SKA14]
          Length = 641

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 24/178 (13%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    +   L   SK F       P  +L+VG  G GKT     L+
Sbjct: 157 KVTFADVAGCDEAKEEVGELVDFLRDPSK-FTKLGGKIPRGVLMVGPPGTGKT----LLA 211

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K ++        +   +                  +       S    +  +A K A   
Sbjct: 212 KAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKKHAPCI 256

Query: 193 KVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              +  ID  GR     +          + ++L  +D       + V+ AT   + L 
Sbjct: 257 IF-IDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFEGGEGVIVIAATNRPDVLD 313


>gi|213156446|ref|YP_002318866.1| type VI secretion ATPase, ClpV1 family [Acinetobacter baumannii
           AB0057]
 gi|215483905|ref|YP_002326130.1| type VI secretion ATPase, ClpV1 family [Acinetobacter baumannii
           AB307-0294]
 gi|332854746|ref|ZP_08435524.1| type VI secretion ATPase, ClpV1 family [Acinetobacter baumannii
           6013150]
 gi|213055606|gb|ACJ40508.1| type VI secretion ATPase, ClpV1 family [Acinetobacter baumannii
           AB0057]
 gi|213986552|gb|ACJ56851.1| type VI secretion ATPase, ClpV1 family [Acinetobacter baumannii
           AB307-0294]
 gi|332727832|gb|EGJ59235.1| type VI secretion ATPase, ClpV1 family [Acinetobacter baumannii
           6013150]
          Length = 893

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 59  GVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           G+ V + + +E+        +  + V  Q   Y +++L+  +    SK    D +    V
Sbjct: 554 GIPVGKMVNDEIKQILTLEDKLGERVMGQD--YALTQLVQGI--KTSKAKLEDPNKPQGV 609

Query: 114 ILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            L+VG +GVGKT T +  L+ ++      ++              +  + +  +   +  
Sbjct: 610 FLLVGPSGVGKTETALA-LANELYGGEQHLITIN-----------MSEYQEAHTVSSLKG 657

Query: 173 EIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                          +A  +    V+++D   + H++   +         L+  +     
Sbjct: 658 APPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVID 717

Query: 232 --SVLQVLDATTGQNALRQV 249
             +   +L + TG +A+ Q 
Sbjct: 718 FKNTTILLTSNTGSSAIMQA 737


>gi|188582900|ref|YP_001926345.1| carbohydrate kinase, thermoresistant glucokinase family
           [Methylobacterium populi BJ001]
 gi|179346398|gb|ACB81810.1| carbohydrate kinase, thermoresistant glucokinase family
           [Methylobacterium populi BJ001]
          Length = 190

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           P V++V+GV+G GK+TV   L++++         A GD F + 
Sbjct: 19  PTVLVVMGVSGSGKSTVAALLAERLGW-----TFADGDDFHTQ 56


>gi|149922629|ref|ZP_01911057.1| ferrous iron transport protein B [Plesiocystis pacifica SIR-1]
 gi|149816515|gb|EDM76012.1| ferrous iron transport protein B [Plesiocystis pacifica SIR-1]
          Length = 697

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           V ++D  G     + +        R L   D  AP  VL VLDAT     L        +
Sbjct: 55  VRLVDLPGTYSL-TPMAEDEAVAFRALTGADVEAPELVLLVLDATNLGRNLYLALQIFEL 113

Query: 256 AGTTGLIMTKMD--GTARGGG-LIPIVVTHKIPVY--FLGVGEGINDL 298
                +++  +D    A  G     +     +PV       GEG+ +L
Sbjct: 114 GLPVVVVLNMVDLAKDAGVGVDARALEAALGLPVVETVARTGEGVPEL 161


>gi|146422384|ref|XP_001487131.1| hypothetical protein PGUG_00508 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1115

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 7/188 (3%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL-SKPFNWDFSHRPHVILVVGV 119
            V   ++ E   K     VS  +      +   + L     +            +++VG 
Sbjct: 409 EVTTLVISEWREKEKKTKVSFGKRTNLPIKEQRETLPVFSMRDDIVKAVRENQFLVIVGE 468

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
            G GKTT I    + + + G       GD  +     Q +  A  + A  V  E+G    
Sbjct: 469 TGSGKTTQIV---QYLYEEGFNQ---QGDQTKLIGCTQPRRVAAESVAKRVSEEVGCKIG 522

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
                  +       +  I      +     L         V+   + H       VL A
Sbjct: 523 ETVGYTIRFDDKTGPNTRIKYMTDGMLQREALNDKEMSKYSVIMLDEAHERTIATDVLFA 582

Query: 240 TTGQNALR 247
              Q AL+
Sbjct: 583 LLKQAALK 590


>gi|148979037|ref|ZP_01815282.1| cell division protein FtsH [Vibrionales bacterium SWAT-3]
 gi|145962010|gb|EDK27298.1| cell division protein FtsH [Vibrionales bacterium SWAT-3]
          Length = 655

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  IL+VG  G GKT     L+K ++     
Sbjct: 160 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGILLVGPPGTGKT----LLAKAIAGEAKV 213

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 214 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 257

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 258 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 306


>gi|112553470|gb|ABI20439.1| partitioning protein A [uncultured bacterium]
          Length = 210

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 17/154 (11%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  ++  G K +L  GD     A         R +  +  S   +  A 
Sbjct: 12  GVGKTTTAVHLATMLARQG-KTLLIDGD---PQASAASWAAWRRENEGYTPSPTTTCLAG 67

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A  A  +  A     +++D  GR      +++L+A    +      LD  A   +L V 
Sbjct: 68  KAILAEGKQLASGFAHVVVDAGGRDSVGLRSALLLAQRAVIPIGASNLDAAAMTDLLTV- 126

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
                   +     ++       +++T++D   +
Sbjct: 127 --------VELARDYNPDLDV-RVLLTRVDPRTK 151


>gi|90969890|gb|ABE02736.1| NBS-LRR type R protein Nbs9-75 [Oryza sativa Japonica Group]
          Length = 976

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 54/132 (40%), Gaps = 20/132 (15%)

Query: 6   VASESLSW-IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           V+S++LS  + KL         ++   I ++ +  R+++     +   LI +D+      
Sbjct: 89  VSSQTLSRQLMKLKD-----RHRIAIQIRNLRT--RIEEVSTRNIRYNLIENDLTCTTTD 141

Query: 65  K---IVEELLTK-RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGV 119
           +    +E++  +     + +           +  +        +   +  P  V+ VVG+
Sbjct: 142 ERNLFMEDIRNQSANNIEEADLVGFSGPKRELLDL-------IDVHANDGPTKVVCVVGM 194

Query: 120 NGVGKTTVIGKL 131
            G+GKTT+  K+
Sbjct: 195 GGLGKTTIARKI 206


>gi|168010508|ref|XP_001757946.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|46917350|dbj|BAD18007.1| plastid division site determinant MinD [Physcomitrella patens]
 gi|162690823|gb|EDQ77188.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 336

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 15/170 (8%)

Query: 107 FSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
               P V+++  G  GVGKTT    L   ++    KV+    D       +   +     
Sbjct: 62  VGEIPRVVVITSGKGGVGKTTTTANLGMCLARLNFKVVAIDADV---GLRNLDLLLGLEN 118

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG---KMIRVL 222
             ++   E+ +    L     +  +    ++L I+   +      L  G      ++  L
Sbjct: 119 RVNYTAMEVLNGECRLDQALIRDKRWTNFELLCIN---KPRYKMPLGFGGKALTWLVDAL 175

Query: 223 KRLDPHAPHSVLQVLDATTGQNA--LRQVEMFHAVAGTTGLIMTKM-DGT 269
           K+     PH +L  +D   G +A  +  +         T   +T + D  
Sbjct: 176 KKRPEGQPHFIL--IDCPAGIDAGFITAITPAKEAILVTTPDITSLRDAD 223


>gi|68053499|gb|AAY85169.1| arsenite transporter ATPase-like protein [Leptospirillum
           ferriphilum]
          Length = 591

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 65/168 (38%), Gaps = 21/168 (12%)

Query: 58  IGVAVAQKIVEELLTKR-YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           +G+   ++++ +L  +   A D  ++     V++LI  +            +    ++++
Sbjct: 288 VGLDALRQLLTDLPPQAPVAVDSPIELDEPGVADLIDGI-----------AADGHGLVML 336

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
           +G  GVGKTT+   ++ +++  GL V L   D    AA     + +   +      +  +
Sbjct: 337 MGKGGVGKTTLAAAIAVELAHRGLPVHLTTSD---PAAHLTDTLDSSLDNLTVSRIDPHA 393

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
           +         +   A+      +D  GR      L +   + I V + 
Sbjct: 394 ETERYRQHVLETKGAQ------LDAEGRALLEEDLRSPCTEEIAVFQA 435


>gi|28897692|ref|NP_797297.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839647|ref|ZP_01992314.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AQ3810]
 gi|260366280|ref|ZP_05778736.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus K5030]
 gi|260879438|ref|ZP_05891793.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AN-5034]
 gi|260898291|ref|ZP_05906787.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus Peru-466]
 gi|31340005|sp|Q87R79|CLPX_VIBPA RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|28805905|dbj|BAC59181.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746837|gb|EDM57825.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AQ3810]
 gi|308088429|gb|EFO38124.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus Peru-466]
 gi|308093194|gb|EFO42889.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus AN-5034]
 gi|308114044|gb|EFO51584.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           parahaemolyticus K5030]
 gi|328473325|gb|EGF44173.1| ATP-dependent protease ATP-binding subunit ClpX [Vibrio
           parahaemolyticus 10329]
          Length = 426

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   ++I E L      +D + + +   V     ++    +
Sbjct: 46  NDIIREEIKDVLPKKESEALPTPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDT 105

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 106 TSEGVELGKSN--ILLIGPTGSGKTLLAETLARFL 138


>gi|312198201|ref|YP_004018262.1| sulfate adenylyltransferase large subunit [Frankia sp. EuI1c]
 gi|311229537|gb|ADP82392.1| sulfate adenylyltransferase, large subunit [Frankia sp. EuI1c]
          Length = 642

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            RP VI   G++G GK+T+   + KK+ D G    L  GD  R  
Sbjct: 461 QRPAVIWFTGLSGAGKSTIANLVEKKLHDEGFHTYLLDGDNVRHG 505


>gi|312196661|ref|YP_004016722.1| sulfate adenylyltransferase large subunit [Frankia sp. EuI1c]
 gi|311227997|gb|ADP80852.1| sulfate adenylyltransferase, large subunit [Frankia sp. EuI1c]
          Length = 642

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            RP VI   G++G GK+T+   + KK+ D G    L  GD  R  
Sbjct: 461 QRPAVIWFTGLSGAGKSTIANLVEKKLHDEGFHTYLLDGDNVRHG 505


>gi|293569298|ref|ZP_06680596.1| ClpE [Enterococcus faecium E1071]
 gi|291588004|gb|EFF19854.1| ClpE [Enterococcus faecium E1071]
          Length = 698

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 19/145 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + + ++L      +D +V R    V++ I +  + L+K      S      L VG  GVG
Sbjct: 386 KNLADDLKAHVIGQDNAVDR----VAKAIRRNRVGLNKQNRPIGS-----FLFVGPTGVG 436

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KT +  +L+ ++   G +  +   D          +     + +  + S  G      A 
Sbjct: 437 KTELAKQLAYEL--FGSQDSMIRFDMS--------EYMEKHSVSKLIGSPPGYVGYEEAG 486

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNN 208
           +  ++ +     ++++D   + H +
Sbjct: 487 QLTEKVRRNPYSLVLLDEVEKAHPD 511


>gi|238897349|ref|YP_002923026.1| helicase, ATP-dependent [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465104|gb|ACQ66878.1| helicase, ATP-dependent [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 1242

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 58/157 (36%), Gaps = 18/157 (11%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI-------DQLKI- 160
            R  V+++ G  G GKTT + K+  ++   G+  M+      R AA        D+LK  
Sbjct: 26  ERHQVVIISGETGSGKTTQLPKICLELGRGGVTGMIGHTQPRRLAAYRVAQRIADELKTP 85

Query: 161 WADRTSADFVCSEIGSDAAAL--AYEAFKQAQAKK------VDVLIIDTAGRLHNNSILM 212
             +R        +  ++  A+    +    A+ +        D +IID A     +  + 
Sbjct: 86  LGERVGYQMRFHQKINENTAIKLMTDGILLAEIQHDRLLMRYDTIIIDEA--HERSLNID 143

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             +G + ++L +            LD+    +   Q 
Sbjct: 144 FILGYLRQLLPKRPDLKIIITSATLDSQRFSDHFNQA 180


>gi|225448022|ref|XP_002271852.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2374

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 9/58 (15%)

Query: 89   SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             E I K L+  +   N     +  VI +VG+ G+GKTT    L+K + + G +++   
Sbjct: 1441 REEIVKYLLSHNASGN-----KISVIALVGMGGIGKTT----LAKLLEEIGKEIVKKC 1489


>gi|222084827|ref|YP_002543356.1| branched-chain amino acid ABC transporter [Agrobacterium
           radiobacter K84]
 gi|221722275|gb|ACM25431.1| branched-chain amino acid ABC transporter [Agrobacterium
           radiobacter K84]
          Length = 260

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           V  ++G NG GKTTV   L+K +      + L   D  R+
Sbjct: 43  VHALIGPNGAGKTTVFNLLTKFLQPTHGTITLLGTDITRT 82


>gi|218710451|ref|YP_002418072.1| cell division protein FtsH [Vibrio splendidus LGP32]
 gi|218323470|emb|CAV19647.1| cell division protein FtsH [Vibrio splendidus LGP32]
          Length = 659

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  IL+VG  G GKT     L+K ++     
Sbjct: 163 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGILLVGPPGTGKT----LLAKAIAGEAKV 216

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 217 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 260

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 261 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 309


>gi|213966654|ref|ZP_03394805.1| cell division protein FtsH [Pseudomonas syringae pv. tomato T1]
 gi|301383164|ref|ZP_07231582.1| cell division protein FtsH [Pseudomonas syringae pv. tomato Max13]
 gi|302063401|ref|ZP_07254942.1| cell division protein FtsH [Pseudomonas syringae pv. tomato K40]
 gi|302133774|ref|ZP_07259764.1| cell division protein FtsH [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213928504|gb|EEB62048.1| cell division protein FtsH [Pseudomonas syringae pv. tomato T1]
 gi|331016641|gb|EGH96697.1| cell division protein FtsH [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 634

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++            +                  +       S    +  +
Sbjct: 201 T----LIAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|116326771|ref|YP_803308.1| hypothetical protein TNAV2c_gp085 [Trichoplusia ni ascovirus 2c]
 gi|102231779|gb|ABF70602.1| hypothetical protein [Trichoplusia ni ascovirus 2c]
          Length = 695

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 93  HKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
             ML  ++K     F    P ++L+ G++G GK+T   K+ KK  +         
Sbjct: 373 KTMLNLINKRGENQFKIKSPIMMLMCGISGSGKSTTASKMKKKFVEINRDYWRLR 427


>gi|90961363|ref|YP_535279.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           salivarius UCC118]
 gi|90820557|gb|ABD99196.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
           salivarius UCC118]
          Length = 730

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 60/149 (40%), Gaps = 18/149 (12%)

Query: 67  VEELLTKRYAK----DVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVN 120
           V EL  K   +      S+++ +    E + K+   + +    ++ S RP    L VG  
Sbjct: 414 VGELKAKEKEQLRDLGSSLEKHVIGQDEAVDKVARSIRRNRIGFNKSGRPIGSFLFVGPT 473

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-DFVCSEIGSDAA 179
           GVGKT    +L++++   G +  +   D         +  + ++ S    + S  G    
Sbjct: 474 GVGKTETAKQLAREL--FGTEDSMIRFD---------MSEYMEKFSVSKLIGSPPGYVGY 522

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             A +  +Q +     ++++D   + H +
Sbjct: 523 EEAGQLTEQVRRHPYSLILLDEVEKAHPD 551


>gi|71278677|ref|YP_268968.1| ATP-dependent helicase HrpA [Colwellia psychrerythraea 34H]
 gi|71144417|gb|AAZ24890.1| ATP-dependent helicase HrpA [Colwellia psychrerythraea 34H]
          Length = 1375

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 19/156 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS--HRPHVILVVGVNGV 122
           K+VE L           Q+ +  + ++ +   +P+S+      +      V+++ G  G 
Sbjct: 67  KLVEPLQQHILRSIQDKQQKIRSLPKITYPEGLPISENAAQISAAIDANQVVIIAGETGS 126

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----------ADFVCS 172
           GKTT I K+  ++   G+  ++      R AA       A+               F   
Sbjct: 127 GKTTQIPKICLEL-GRGVDGLIGHTQPRRIAARTVANRIAEELGTKLGEQVGYKVRFNDQ 185

Query: 173 EIGSDAAALAYEAFKQAQAK------KVDVLIIDTA 202
                   L  +    A+ +      K D +IID A
Sbjct: 186 VSEQSYIKLMTDGILLAEMQRDRLLLKYDTIIIDEA 221


>gi|1813473|gb|AAB41679.1| cell division protein [Bacillus firmus]
          Length = 679

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K+V E   K   KDV+           + + L    + F+   +  P  +L+VG  G GK
Sbjct: 154 KMVNEDKKKAKFKDVAGADEEKQELVEVVEFLKD-PRKFSAIGARIPKGVLLVGPPGTGK 212

Query: 125 T 125
           T
Sbjct: 213 T 213


>gi|332708633|ref|ZP_08428606.1| WD-40 repeat-containing protein [Lyngbya majuscula 3L]
 gi|332352589|gb|EGJ32156.1| WD-40 repeat-containing protein [Lyngbya majuscula 3L]
          Length = 1183

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 18/161 (11%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           +  L+    W       ++ ++G+ G+GKTT+  KL+  + D    VM  +    R+A  
Sbjct: 112 MQELNTLQEWILQDNCCLVALLGMGGIGKTTLAVKLAHLLQDKFEFVMWRSL---RNAPP 168

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFK--QAQAKKVDVLIIDTAG-------RLH 206
             L+             +  +  +++  +  +  Q       +L++D          R  
Sbjct: 169 --LEEVLADMIQFLSVQQETNLPSSVDGKILRLIQYLQTARCLLVLDNTESILESGSRTG 226

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                 AG G+++R +        H+   V+ +      L 
Sbjct: 227 GYREGYAGYGELLRTI----GETSHNSCLVMTSREPPQDLN 263


>gi|322507935|gb|ADX03389.1| Putative ClpA/B-type chaperone [Acinetobacter baumannii 1656-2]
 gi|323517527|gb|ADX91908.1| ATPase with chaperone activity, ATP-binding subunit [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 893

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 59  GVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           G+ V + + +E+        +  + V  Q   Y +++L+  +    SK    D +    V
Sbjct: 554 GIPVGKMVNDEIKQILTLEDKLGERVMGQD--YALTQLVQGI--KTSKAKLEDPNKPQGV 609

Query: 114 ILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            L+VG +GVGKT T +  L+ ++      ++              +  + +  +   +  
Sbjct: 610 FLLVGPSGVGKTETALA-LANELYGGEQHLITIN-----------MSEYQEAHTVSSLKG 657

Query: 173 EIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                          +A  +    V+++D   + H++   +         L+  +     
Sbjct: 658 APPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVID 717

Query: 232 --SVLQVLDATTGQNALRQV 249
             +   +L + TG +A+ Q 
Sbjct: 718 FKNTTILLTSNTGSSAIMQA 737


>gi|303248067|ref|ZP_07334333.1| ABC transporter related protein [Desulfovibrio fructosovorans JJ]
 gi|302490624|gb|EFL50529.1| ABC transporter related protein [Desulfovibrio fructosovorans JJ]
          Length = 251

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 60/192 (31%), Gaps = 26/192 (13%)

Query: 103 FNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
            + + S  P  ILV+ G +G GKTT++  L+  + D     +   GD +R   +  +++ 
Sbjct: 16  LDVEISCPPGGILVLTGPSGSGKTTILRLLAG-LDDPDEGQVGLDGDVWRDT-VKGIRVK 73

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
             +     V  E          E    A                  ++     + ++  +
Sbjct: 74  PRQRGIGLVFQEYSLFPHMTLAENVSYA----------------TTDTAFAEELLELFGI 117

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARG---GGLIPI 278
               D H       +      + AL Q       A       + +D   R      L+ +
Sbjct: 118 AHLKDAHPG----TMSGGERQRGALCQALARRPKALLLDEPFSALDAATRVTLRHELLDV 173

Query: 279 VVTHKIPVYFLG 290
                IP+  + 
Sbjct: 174 RDRFAIPIVHVT 185


>gi|268324137|emb|CBH37725.1| conserved hypothetical protein, containing CobQ/CobB/MinD/ParA
           nucleotide binding domain [uncultured archaeon]
          Length = 282

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 96  LMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +   ++  +       H ++ + G  GVGKTTV   L+  ++ +GL V L   D
Sbjct: 13  MKEEAEAVDTSMRRVKHKVMVMSGKGGVGKTTVAANLAFALAMSGLDVGLMDAD 66


>gi|242086543|ref|XP_002439104.1| hypothetical protein SORBIDRAFT_09g000560 [Sorghum bicolor]
 gi|241944389|gb|EES17534.1| hypothetical protein SORBIDRAFT_09g000560 [Sorghum bicolor]
          Length = 430

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
            +N      P VI V    G GKTT++  L      AG   +  + D F   A +Q
Sbjct: 166 KYNDGDDIPPLVIGVSAPQGSGKTTLVFALDYLFRVAGRNSVTLSIDDFYLTAKEQ 221


>gi|242041269|ref|XP_002468029.1| hypothetical protein SORBIDRAFT_01g038340 [Sorghum bicolor]
 gi|241921883|gb|EER95027.1| hypothetical protein SORBIDRAFT_01g038340 [Sorghum bicolor]
          Length = 722

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 12/112 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS- 172
           I++VG+   GKT    KL++ +   G +        +R     +LK      +ADF    
Sbjct: 315 IVLVGLPARGKTFTAAKLTRYLRWLGHETKHFNVGKYR-----RLK-HGTNQTADFFRGD 368

Query: 173 -----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
                E  ++ AALA E       +   V I D          ++  + +  
Sbjct: 369 NREGVEARNEVAALAMEDMLSWMQEGGQVGIFDATNSTRIRRNMLMKMAEGK 420


>gi|256811354|ref|YP_003128723.1| GTPase or GTP-binding protein-like protein [Methanocaldococcus
           fervens AG86]
 gi|256794554|gb|ACV25223.1| GTPase or GTP-binding protein-like protein [Methanocaldococcus
           fervens AG86]
          Length = 357

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 16/115 (13%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR----SAAIDQL----KI 160
            +P  IL+VG    GKTT+   L+ ++ + G KV +   D  +      A   L    + 
Sbjct: 26  EKPLKILIVGGIDSGKTTLTTFLANELLNLGFKVAIIDCDIGQKSILPPATISLAFLEEN 85

Query: 161 WADRTSADFVCSEIGSDAAALAYEA--------FKQAQAKKVDVLIIDTAGRLHN 207
           +++        S      + + +                 K DV+IIDT G + N
Sbjct: 86  FSNLCEIKPHKSYFVGSTSPIQFFGEMITGTKLLCDYAEDKADVIIIDTTGLISN 140


>gi|227891749|ref|ZP_04009554.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|227866408|gb|EEJ73829.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
           salivarius ATCC 11741]
          Length = 730

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 60/149 (40%), Gaps = 18/149 (12%)

Query: 67  VEELLTKRYAK----DVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVN 120
           V EL  K   +      S+++ +    E + K+   + +    ++ S RP    L VG  
Sbjct: 414 VGELKAKEKEQLRDLGSSLEKHVIGQDEAVDKVARSIRRNRIGFNKSGRPIGSFLFVGPT 473

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-DFVCSEIGSDAA 179
           GVGKT    +L++++   G +  +   D         +  + ++ S    + S  G    
Sbjct: 474 GVGKTETAKQLAREL--FGTEDSMIRFD---------MSEYMEKFSVSKLIGSPPGYVGY 522

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             A +  +Q +     ++++D   + H +
Sbjct: 523 EEAGQLTEQVRRHPYSLILLDEVEKAHPD 551


>gi|255102715|ref|ZP_05331692.1| putative type IV pilus retraction protein (putative twitching
           mobility protein) [Clostridium difficile QCD-63q42]
 gi|255308536|ref|ZP_05352707.1| putative type IV pilus retraction protein (putative twitching
           mobility protein) [Clostridium difficile ATCC 43255]
          Length = 360

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 53/137 (38%), Gaps = 5/137 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + ++  GF   S ++      +  ++ +  + + + +E+    +D   + + K  E    
Sbjct: 27  VARVKGGFVKLSEQILTSEVTMQMAKDIAGESMFKVIEEHG-EAD--FSASLKTGERFRV 83

Query: 73  KRYAKDVSVQRVLYDVSELI-HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             Y +  +    +  ++  I     + L +           ++LV G  G GK+T +  +
Sbjct: 84  NAYRQKGNYAIAIRTITAEIPTFEKLGLPESIKSFTEKHKGLVLVTGPTGSGKSTTLASM 143

Query: 132 SKKMSDAGLKVMLAAGD 148
              +++   K ++   D
Sbjct: 144 INIINEKQQKHIITLED 160


>gi|255553103|ref|XP_002517594.1| Disease resistance protein RPS5, putative [Ricinus communis]
 gi|223543226|gb|EEF44758.1| Disease resistance protein RPS5, putative [Ricinus communis]
          Length = 910

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN-----WDFSHRPHVILVVGVNG 121
           V+EL  +R  ++V+ +R +  V E   ++ +      +      D      +I V G+ G
Sbjct: 127 VKELTGQRDIQEVAYKRPVEPVVERPSELTLGFKTMLDNVWSYLDEEEPVCIIGVYGMGG 186

Query: 122 VGKTT 126
           VGKTT
Sbjct: 187 VGKTT 191


>gi|193652468|ref|XP_001946836.1| PREDICTED: GPN-loop GTPase 1-like [Acyrthosiphon pisum]
          Length = 354

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             +      +    P  ++V+G+ G GKTT + KL+  +        L   D
Sbjct: 12  DAIENKTECEAFKSPVCLIVLGMAGSGKTTFVSKLNSYLRQYKRAPYLINLD 63


>gi|156153083|gb|ABU54775.1| mitochondrial initiation factor 2-like protein [Blastocystis
           hominis]
          Length = 500

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 89/270 (32%), Gaps = 43/270 (15%)

Query: 44  GVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF 103
            + EE+    +   +G+ V ++ +E L             V  D  EL+   L    +  
Sbjct: 192 AIEEEVTVQTVSKLLGLPV-RECIERLSEMEEGVSSKDDLVSCDAVELLAIDLDVAVRVK 250

Query: 104 N------WDFSHRPH-------VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           N       D +  PH       V+ V+G    GKTT    L   +  + +    A G T 
Sbjct: 251 NQFNLQPTDMAASPHDLPPRAPVVAVMGHVDHGKTT----LLDYLRKSSVAAKEAGGITQ 306

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R +A +     +      F+           A+ A ++  A   D++++  A        
Sbjct: 307 RISAFN--VSLSKDNKITFI-----DTPGHAAFTAMRKRGACATDIVLLIIAADDGIKE- 358

Query: 211 LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTA 270
                 +   VLK ++      V+ V          ++     +       ++T      
Sbjct: 359 ------QTKEVLKLIEETKLPMVVAVTKCGLKTVNKKEAIKRISTQLLDYDVVT-----T 407

Query: 271 RGGGLIPIVVTHKIPVYFLGVGEGINDLEP 300
             GG + I+            GEGI+DL+ 
Sbjct: 408 PFGGDVNIIGIDSK------TGEGIDDLKE 431


>gi|184157627|ref|YP_001845966.1| ATPase [Acinetobacter baumannii ACICU]
 gi|332874589|ref|ZP_08442490.1| type VI secretion ATPase, ClpV1 family [Acinetobacter baumannii
           6014059]
 gi|183209221|gb|ACC56619.1| ATPase with chaperone activity, ATP-binding subunit [Acinetobacter
           baumannii ACICU]
 gi|332737227|gb|EGJ68153.1| type VI secretion ATPase, ClpV1 family [Acinetobacter baumannii
           6014059]
          Length = 892

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 59  GVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           G+ V + + +E+        +  + V  Q   Y +++L+  +    SK    D +    V
Sbjct: 553 GIPVGKMVNDEIKQILTLEDKLGERVMGQD--YALTQLVQGI--KTSKAKLEDPNKPQGV 608

Query: 114 ILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            L+VG +GVGKT T +  L+ ++      ++              +  + +  +   +  
Sbjct: 609 FLLVGPSGVGKTETALA-LANELYGGEQHLITIN-----------MSEYQEAHTVSSLKG 656

Query: 173 EIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                          +A  +    V+++D   + H++   +         L+  +     
Sbjct: 657 APPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVID 716

Query: 232 --SVLQVLDATTGQNALRQV 249
             +   +L + TG +A+ Q 
Sbjct: 717 FKNTTILLTSNTGSSAIMQA 736


>gi|126641353|ref|YP_001084337.1| putative ClpA/B-type chaperone [Acinetobacter baumannii ATCC 17978]
          Length = 896

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 59  GVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           G+ V + + +E+        +  + V  Q   Y +++L+  +    SK    D +    V
Sbjct: 557 GIPVGKMVNDEIKQILTLEDKLGERVMGQD--YALTQLVQGI--KTSKAKLEDPNKPQGV 612

Query: 114 ILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            L+VG +GVGKT T +  L+ ++      ++              +  + +  +   +  
Sbjct: 613 FLLVGPSGVGKTETALA-LANELYGGEQHLITIN-----------MSEYQEAHTVSSLKG 660

Query: 173 EIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                          +A  +    V+++D   + H++   +         L+  +     
Sbjct: 661 APPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVID 720

Query: 232 --SVLQVLDATTGQNALRQV 249
             +   +L + TG +A+ Q 
Sbjct: 721 FKNTTILLTSNTGSSAIMQA 740


>gi|120611225|ref|YP_970903.1| ATP-dependent helicase HrpA [Acidovorax citrulli AAC00-1]
 gi|120589689|gb|ABM33129.1| ATP-dependent helicase HrpA [Acidovorax citrulli AAC00-1]
          Length = 1341

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 30/189 (15%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA-AGDTFRSAAIDQLKIWADRTSADFV 170
            VI+V G  G GKTT + K++  +   G     A  G+  R     Q +  A  + A  +
Sbjct: 8   QVIIVCGETGSGKTTQLPKIALAL---GRGRCNARPGEKGRLIGHTQPRRIAASSVAKRI 64

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLDPH 228
             E+ +    +     +       D L  D + +L  + IL+A      ++     +   
Sbjct: 65  AEELQTPLGDVVGYKVR-----FQDRLSRDASVKLMTDGILLAETQTDPLLTAYDTIIID 119

Query: 229 APHSVLQVLDATTGQNALRQV-------EMFHAVAGTTGLIMTKMDGTARGGGLIPIVVT 281
             H     +D   G   LRQ+       ++    A        K   +A+G         
Sbjct: 120 EAHERSLNIDFLLGY--LRQILPRRPDLKIVVTSATIDAERFAKHFESAKGPA------- 170

Query: 282 HKIPVYFLG 290
              PV ++ 
Sbjct: 171 ---PVIYVS 176


>gi|91228616|ref|ZP_01262534.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus
           12G01]
 gi|269965579|ref|ZP_06179693.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio
           alginolyticus 40B]
 gi|91187848|gb|EAS74162.1| ATP-dependent protease ATP-binding subunit [Vibrio alginolyticus
           12G01]
 gi|269829804|gb|EEZ84039.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio
           alginolyticus 40B]
          Length = 426

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   ++I E L      +D + + +   V     ++    +
Sbjct: 46  NDIIREEIKDVLPKKESEALPTPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDT 105

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 106 TSEGVELGKSN--ILLIGPTGSGKTLLAETLARFL 138


>gi|92109421|ref|YP_571709.1| cobyrinic acid a,c-diamide synthase [Nitrobacter hamburgensis X14]
 gi|91802503|gb|ABE64877.1| Cobyrinic acid a,c-diamide synthase [Nitrobacter hamburgensis X14]
          Length = 229

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTTV   L+ + +  G    +   D     +  Q    +          ++      
Sbjct: 13  GSGKTTVAIILAGEFAKHGYSAAIVDADPQ--GSSYQWHASSVARGLSPQGVDLVRAPDE 70

Query: 181 LA-YEAFKQAQAKKVDVLIIDTAG 203
            A  +A    +    DV++IDT G
Sbjct: 71  KALTQAID--RLDGYDVVVIDTPG 92


>gi|4567147|gb|AAD23601.1| TAP2 protein [Homo sapiens]
          Length = 483

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 281 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 333

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 334 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 393

Query: 218 MIRVLKR 224
              V ++
Sbjct: 394 YTDVGEK 400


>gi|4566503|gb|AAD23381.1| TAP2 protein [Homo sapiens]
          Length = 483

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 281 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 333

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 334 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 393

Query: 218 MIRVLKR 224
              V ++
Sbjct: 394 YTDVGEK 400


>gi|83956204|ref|ZP_00964657.1| RepA partitioning protein/ATPase, ParA type [Sulfitobacter sp.
           NAS-14.1]
 gi|83839590|gb|EAP78770.1| RepA partitioning protein/ATPase, ParA type [Sulfitobacter sp.
           NAS-14.1]
          Length = 397

 Score = 36.8 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 66/199 (33%), Gaps = 27/199 (13%)

Query: 91  LIHKMLMPLSKPFNWDFSHR-----PHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVML 144
            I + L   +K        R       VI VV    G GKTT    L+++++  G +V+ 
Sbjct: 87  EIRQTLEGNAKKSGTYVPGRRDGDELQVISVVNFKGGSGKTTTSAHLAQRLALKGYRVLA 146

Query: 145 AAGDTF-RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAG 203
              D     +A+  ++   D      +   +  D      E  ++   + +D++      
Sbjct: 147 IDLDPQASLSALHGIQPELDLMEGGTLYDAVRYDDPVPIAEVIRKTYIRGLDLI------ 200

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG--- 260
               N  LM    +    ++R    A              +AL  VE  + V        
Sbjct: 201 --PGNLELMEFEHETPAAIQRGGAKAFF--------ARVHDALDSVEANYDVVVIDCPPQ 250

Query: 261 -LIMTKMDGTARGGGLIPI 278
              +T    +A  G L+ +
Sbjct: 251 LGFLTMSALSASSGVLVTV 269


>gi|315641721|ref|ZP_07896759.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Enterococcus
           italicus DSM 15952]
 gi|315482542|gb|EFU73077.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Enterococcus
           italicus DSM 15952]
          Length = 704

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           + K    T  K+KE       +  +DD     E L  + + SD+G    +++ + L  + 
Sbjct: 360 IKKSIEETKQKIKETDQKEKITATIDDVAQSVERLTGIPV-SDMGANDIERL-KNLDKRL 417

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            +K +     +  V++ I +     S+             L VG  GVGKT +  +L+  
Sbjct: 418 KSKVIGQDEAVEMVAKAIRRNRAGFSEG-----DQPIGSFLFVGPTGVGKTELAKQLA-- 470

Query: 135 MSDAGLKVMLAAGD 148
           +   G +  +   D
Sbjct: 471 LDMFGNENAIIRLD 484


>gi|300934654|ref|ZP_07149910.1| putative ABC transport system, ATP-binding protein [Corynebacterium
           resistens DSM 45100]
          Length = 238

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
             D S +P V+L  G NG GKTT++  L++++  
Sbjct: 22  ELDISAQPTVLL--GTNGAGKTTLMKLLARQLQP 53


>gi|300697355|ref|YP_003748016.1| chaperone protein ClpB [Ralstonia solanacearum CFBP2957]
 gi|299074079|emb|CBJ53619.1| Chaperone clpB [Ralstonia solanacearum CFBP2957]
          Length = 908

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 36/209 (17%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++EL  +L                L     A+ +     L  +++ +      L  P  
Sbjct: 593 VKDELRTVL---------------NLKPLLAARVIGQDHALQAIAQRVRTASANLEDP-- 635

Query: 105 WDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWA 162
              +    V L  G +GVGKT T +  L+  +     K++      ++ A ++  LK   
Sbjct: 636 ---NKPRGVFLFAGPSGVGKTETALA-LADILYGGERKLVTINMSEYQEAHSVSGLK--- 688

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                    S  G           +  +     V+++D   + H + + M         +
Sbjct: 689 --------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGEM 740

Query: 223 KRLD--PHAPHSVLQVLDATTGQNALRQV 249
              +  P    + + +L +  G +A+ Q 
Sbjct: 741 DDAEGRPIDFRNTIIILTSNVGSSAIMQA 769


>gi|251771659|gb|EES52234.1| ATPase AAA-2 domain protein [Leptospirillum ferrodiazotrophum]
          Length = 890

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
               ++ E L  +   ++ +    L  V E+I         P     +    + L+VG +
Sbjct: 559 QTVMRLQETLGERVLGQEPA----LARVGEIIRNSRAGFKAP-----NQPVGIFLLVGPS 609

Query: 121 GVGKT-TVIG 129
           GVGKT T + 
Sbjct: 610 GVGKTETALA 619


>gi|225447923|ref|XP_002267470.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1451

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 23/92 (25%)

Query: 63  AQKIVEELLTKRYAKDVS-------------------VQRVLYDVSELIHKMLMPLSKPF 103
            ++I++ L      +DV                    V   L    + I + ++ L    
Sbjct: 133 VEEIIDRLEDMARDRDVLGLKEGDGEKLSQRWPSTSLVDESLVYGRDQIKEEMVQLLLSD 192

Query: 104 NWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           N   +    VI +VG+ G GKTT    L++ +
Sbjct: 193 NARSTDAMGVISIVGMGGTGKTT----LAQLL 220


>gi|222152938|ref|YP_002562115.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
           uberis 0140J]
 gi|222113751|emb|CAR41760.1| putative ATP-dependent protease ATP-binding subunit ClpL
           [Streptococcus uberis 0140J]
          Length = 700

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           +     ++ + +L   F     +       +I  + L     +E+ DL++ +D+   + +
Sbjct: 576 QTDDAKVTLMDRLKPYF---RPEFLNRFNALIEFKSLAKEDLKEIVDLML-ADVNKTIVK 631

Query: 65  K-----IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           K     + +E+  K           +  +  +I + +      F  D S   H
Sbjct: 632 KGMTLEVTDEVKEKLMVLGYDPTMGVRPLRRIIEQEIRDKMTDFYLDHSEEKH 684


>gi|220919952|ref|YP_002495255.1| plasmid partitioning protein RepA [Methylobacterium nodulans ORS
           2060]
 gi|219952372|gb|ACL62763.1| plasmid partitioning protein RepA [Methylobacterium nodulans ORS
           2060]
          Length = 403

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 45/154 (29%), Gaps = 24/154 (15%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
             VI   G  G GKTT    L++ ++  G +V+    D     A     +   +   D V
Sbjct: 123 VSVINFKG--GSGKTTTAAHLAQHLALTGHRVLAIDLD---PQASLSA-LHGIQPELDKV 176

Query: 171 CSEIGSDAAALAY----EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            S   +     A     E  +      +DV+         N  +        +       
Sbjct: 177 PSIYDALRYDTARKPISEVIQPTNFPGLDVI-------PANLELQEYEYDTPLEASNNNP 229

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
                        T   NAL++V+  + V     
Sbjct: 230 EGKLF-------FTRITNALKEVDERYDVVVIDC 256


>gi|194365245|ref|YP_002027855.1| ATP-dependent metalloprotease FtsH [Stenotrophomonas maltophilia
           R551-3]
 gi|194348049|gb|ACF51172.1| ATP-dependent metalloprotease FtsH [Stenotrophomonas maltophilia
           R551-3]
          Length = 644

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 24/178 (13%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    +   L   SK F       P  +L+VG  G GKT     L+
Sbjct: 160 KVTFADVAGCDEAKEEVGELVDFLRDPSK-FTKLGGKIPRGVLMVGPPGTGKT----LLA 214

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K ++        +   +                  +       S    +  +A K A   
Sbjct: 215 KAIAGEAKVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKKHAPCI 259

Query: 193 KVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              +  ID  GR     +          + ++L  +D       + V+ AT   + L 
Sbjct: 260 IF-IDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFEGGEGVIVIAATNRPDVLD 316


>gi|187919622|ref|YP_001888653.1| type VI secretion ATPase, ClpV1 family [Burkholderia phytofirmans
           PsJN]
 gi|187718060|gb|ACD19283.1| type VI secretion ATPase, ClpV1 family [Burkholderia phytofirmans
           PsJN]
          Length = 891

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 17/151 (11%)

Query: 104 NWDFSHRPH-VILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKI 160
           N +  ++P  V + VG +GVGKT T +  L+  +     K++      ++ A ++  LK 
Sbjct: 614 NLEDPNKPRGVFMFVGPSGVGKTETALA-LADVLYGGERKMVTINMSEYQEAHSVSGLK- 671

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S  G           +  +     V+++D   + H   + M        
Sbjct: 672 ----------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPEVLEMFFQVFDKG 721

Query: 221 VLKRLDPHAPH--SVLQVLDATTGQNALRQV 249
            +   +       + L +L +  G  A+ Q 
Sbjct: 722 TMDDAEGREIDFRNTLIILTSNVGSQAVMQA 752


>gi|114707535|ref|ZP_01440431.1| chlorophyllide reductase iron protein subunit X [Fulvimarina pelagi
           HTCC2506]
 gi|114537094|gb|EAU40222.1| chlorophyllide reductase iron protein subunit X [Fulvimarina pelagi
           HTCC2506]
          Length = 338

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 44/233 (18%)

Query: 91  LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-- 148
           L  +   P+  P +   +    +I + G  G+GK+  +  LS  ++  G +V+L   D  
Sbjct: 20  LRAEAQEPIDTPSSGPITKETQIIAIYGKGGIGKSFTLANLSYMLAQQGKRVLLIGCDPK 79

Query: 149 --------------------TFRSAAIDQLK----------IWADRTSADFVCSEIGSDA 178
                               + + AA +++           ++A       V    G   
Sbjct: 80  SDTTSLLFGGKACPTIIETSSKKKAAGEEVDISDVCFKRDGVFAMELGGPEVGRGCGGRG 139

Query: 179 AALAYEAFKQ--AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR--VLKRLDPHAPHSVL 234
               +E  ++        D +++D  G      ++  G G  I   + +++     + + 
Sbjct: 140 IIHGFELLEKLGFHDWGFDYVLLDFLG-----DVVCGGFGLPIARDMCQKVIVVGSNDLQ 194

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
            +  A    +A+          G  G+++ K DGT   G          IPV 
Sbjct: 195 SLYVANNVCSAVEYFRKLGGNVGVAGMVVNKDDGT---GEAAAFAKAVGIPVL 244


>gi|118356293|ref|XP_001011405.1| Dynein heavy chain family protein [Tetrahymena thermophila]
 gi|89293172|gb|EAR91160.1| Dynein heavy chain family protein [Tetrahymena thermophila SB210]
          Length = 4113

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 112  HVILVVGVNGVGKTTVIGKLSK 133
            H ++VVG+ G GKTT I  L+K
Sbjct: 1743 HGVMVVGITGTGKTTNIHTLAK 1764


>gi|15644155|ref|NP_229204.1| antibiotic ABC transporter, ATP-binding protein, putative
           [Thermotoga maritima MSB8]
 gi|4981967|gb|AAD36474.1|AE001793_4 antibiotic ABC transporter, ATP-binding protein, putative
           [Thermotoga maritima MSB8]
          Length = 327

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 87  DVSELIHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
            V E + K            FS  +  +   +G NG GKTT I  L+  +     K  +A
Sbjct: 5   IVVENLVKKFGDFEAVKGVSFSVKKGEIFAFLGPNGAGKTTTIHMLTTLLKPTSGKAWVA 64

Query: 146 AGDT 149
             D 
Sbjct: 65  GHDV 68


>gi|46201566|ref|ZP_00208147.1| COG0003: Oxyanion-translocating ATPase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 576

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 13/145 (8%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V++ +G  GVGKT+V   ++  ++  G +V L+  D    AA  Q  +            
Sbjct: 327 VVMTMGKGGVGKTSVAAAIAIALARQGHQVTLSTTD---PAAHVQDAVEGKVPGLTVTRI 383

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM----AGIGKMIRVLKRLDPH 228
           +   + A    E   +A         +D AGR      L       I       + +D  
Sbjct: 384 DPEREVADYRDEVLAKAGGD------LDVAGRAMLEEDLRSPCTEEIAVFRAFSRTVDEG 437

Query: 229 APHSVLQVLDATTGQNALRQVEMFH 253
               V+     T     L      +
Sbjct: 438 KDRFVILDTAPTGHTILLLDAAEAY 462


>gi|332294895|ref|YP_004436818.1| Cobyrinic acid ac-diamide synthase [Thermodesulfobium narugense DSM
           14796]
 gi|332177998|gb|AEE13687.1| Cobyrinic acid ac-diamide synthase [Thermodesulfobium narugense DSM
           14796]
          Length = 248

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           I V G  GVGKTTV    +  +S  G  V+L   D+
Sbjct: 3   IAVAGKGGVGKTTVCAWFADYLSRQGKDVLLIDADS 38


>gi|330877240|gb|EGH11389.1| cell division protein FtsH [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 634

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++            +                  +       S    +  +
Sbjct: 201 T----LIAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|326478682|gb|EGE02692.1| hypothetical protein TEQG_01727 [Trichophyton equinum CBS 127.97]
          Length = 649

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA--GDTFRSAAIDQLKIWAD 163
               +P VI + GV+G GKTT++ +L + ++D        +   D      + Q K W+ 
Sbjct: 8   SAQEKPVVIGLYGVSGSGKTTLLNQLKRTLNDEHFLFYEGSQVIDEVTPGGLAQFKGWSR 67

Query: 164 RTSAD 168
                
Sbjct: 68  ERQVT 72


>gi|310819971|ref|YP_003952329.1| DNA polymerase III subunits gamma and tau [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393043|gb|ADO70502.1| DNA polymerase III, subunits gamma and tau [Stigmatella aurantiaca
           DW4/3-1]
          Length = 404

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 1/89 (1%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           H  L  G  GVGKTT    L+K ++        +   T R+          D    D   
Sbjct: 39  HAYLFCGPRGVGKTTAARLLAKALNCE-QGPTASPCGTCRACTEITSGTSVDVAEIDGAS 97

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           +    +   +   A    Q  +  + IID
Sbjct: 98  NNGVENVREIRENAKYLPQRDRHKIYIID 126


>gi|308176176|ref|YP_003915582.1| drug resistance ATP-binding protein [Arthrobacter arilaitensis
           Re117]
 gi|307743639|emb|CBT74611.1| putative drug resistance ATP-binding protein [Arthrobacter
           arilaitensis Re117]
          Length = 578

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 24/123 (19%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSEL------------IHKMLMPLSKPF 103
           +D    V  + V +   +   +++  +++     EL            I   L P+    
Sbjct: 335 ADRNAQVVARRVND--ARARLEELEDRQIRKPPQELEFMGLTAAGEPHIVGALEPVFTTA 392

Query: 104 NWDFSHRPH----------VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
           N    +R              L+ G NG GK+T++  L+  +  +  +V  +  D  R  
Sbjct: 393 NVTVRNRLTATSLSISRGEKWLITGPNGSGKSTLLSLLAGTLEPSAGQVTRSPNDRIRLL 452

Query: 154 AID 156
           A +
Sbjct: 453 AQE 455


>gi|302560774|ref|ZP_07313116.1| ABC transporter, ATP-binding protein [Streptomyces griseoflavus
           Tu4000]
 gi|302478392|gb|EFL41485.1| ABC transporter, ATP-binding protein [Streptomyces griseoflavus
           Tu4000]
          Length = 642

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 53  LIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL----SKPFNWDFS 108
           L++S  GVA A+++ E L  +    D S      +    +    +       KP   D S
Sbjct: 360 LVQS--GVASAERVFELLDAEEQEADASPAERPDEPRGRVALERVSFRYDPEKPLIEDLS 417

Query: 109 ---HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
                 H + +VG  G GKTT++  L +    +G ++ L   D  R
Sbjct: 418 LAVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAR 463


>gi|300312382|ref|YP_003776474.1| chromosome partitioning ATPase [Herbaspirillum seropedicae SmR1]
 gi|300075167|gb|ADJ64566.1| ATPase involved in chromosome partitioning protein [Herbaspirillum
           seropedicae SmR1]
          Length = 362

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 51  DLLIRSDIGVAVAQKI--VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
            +L+  ++G   A ++  + +L+ +   K   V  V  +V   I      + +      +
Sbjct: 39  RVLLDVELGYPAASQVAPIRQLVEEALGKLPGVTAVEANVYFKIVAH--AVQRGIKLKSN 96

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            +  + +  G  GVGK+T    L+  +S  G +V +   D +
Sbjct: 97  VKNIIAVASGKGGVGKSTTAVNLALALSAEGARVGILDADIY 138


>gi|262363432|gb|ACY60153.1| cell division protein [Yersinia pestis D106004]
          Length = 573

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 122 EAKEEVSELVDYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 177

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 178 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 221

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 222 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 267


>gi|169633789|ref|YP_001707525.1| putative ClpA/B-type chaperone [Acinetobacter baumannii SDF]
 gi|169152581|emb|CAP01563.1| putative ClpA/B-type chaperone [Acinetobacter baumannii]
          Length = 896

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 59  GVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           G+ V + + +E+        +  + V  Q   Y +++L+  +    SK    D +    V
Sbjct: 557 GIPVGKMVNDEIKQILTLEDKLGERVMGQD--YALTQLVQGI--KTSKAKLEDPNKPQGV 612

Query: 114 ILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            L+VG +GVGKT T +  L+ ++      ++              +  + +  +   +  
Sbjct: 613 FLLVGPSGVGKTETALA-LANELYGGEQHLITIN-----------MSEYQEAHTVSSLKG 660

Query: 173 EIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                          +A  +    V+++D   + H++   +         L+  +     
Sbjct: 661 APPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVID 720

Query: 232 --SVLQVLDATTGQNALRQV 249
             +   +L + TG +A+ Q 
Sbjct: 721 FKNTTILLTSNTGSSAIMQA 740


>gi|167576608|ref|ZP_02369482.1| ClpA/B type protease [Burkholderia thailandensis TXDOH]
          Length = 907

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 25/134 (18%)

Query: 44  GVREELEDLL--IRSD---IGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDV-- 88
               ELE  L  ++ D   +   V + IV E+        + +    +VS  R L D   
Sbjct: 545 DALRELERALSSLQGDCAFVFPEVNEAIVAEIMSDWTGIPVGRMVTDEVSAVRALPDTLA 604

Query: 89  ------SELIHKM--LMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAG 139
                  + +H++   +  ++    D      V L+ G +GVGKT T +  L++ +    
Sbjct: 605 ARVIGQRDALHQICDRVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALA-LAEALYGGE 663

Query: 140 LKVMLAAGDTFRSA 153
             ++      ++ A
Sbjct: 664 QNLITINMSEYQEA 677


>gi|241203216|ref|YP_002974312.1| Ti-type conjugative transfer relaxase TraA [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240857106|gb|ACS54773.1| Ti-type conjugative transfer relaxase TraA [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 1536

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 31/169 (18%)

Query: 97  MPLSKPFNWDFSHRPHVI---------LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             L KPF  D      +           VVG+ G GK+T++   + +++  G    +   
Sbjct: 383 GDLDKPFKLDAEQINAISHITGDSGIAAVVGLAGAGKSTLLA--AARVAWEGEGRRVIGA 440

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
               + A    +   D +      S   +    +     +  +    DVL++D AG +  
Sbjct: 441 ----ALAGKAAEGLEDSSGI---RSRTLAAWELIWANGHETLRRG--DVLVVDEAGMVS- 490

Query: 208 NSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
                    +M RVL ++   A   V+ V DA   Q    Q        
Sbjct: 491 -------SQQMARVL-KIAEDAGTKVVLVGDAMQLQPI--QAGAAFRAI 529


>gi|254977130|ref|ZP_05273602.1| putative type IV pilus retraction protein (putative twitching
           mobility protein) [Clostridium difficile QCD-66c26]
 gi|255094459|ref|ZP_05323937.1| putative type IV pilus retraction protein (putative twitching
           mobility protein) [Clostridium difficile CIP 107932]
 gi|255316210|ref|ZP_05357793.1| putative type IV pilus retraction protein (putative twitching
           mobility protein) [Clostridium difficile QCD-76w55]
 gi|255518872|ref|ZP_05386548.1| putative type IV pilus retraction protein (putative twitching
           mobility protein) [Clostridium difficile QCD-97b34]
 gi|255652051|ref|ZP_05398953.1| putative type IV pilus retraction protein (putative twitching
           mobility protein) [Clostridium difficile QCD-37x79]
 gi|260685025|ref|YP_003216310.1| putative type IV pilus retraction protein [Clostridium difficile
           CD196]
 gi|260688683|ref|YP_003219817.1| putative type IV pilus retraction protein [Clostridium difficile
           R20291]
 gi|306521788|ref|ZP_07408135.1| putative type IV pilus retraction protein (putative twitching
           mobility protein) [Clostridium difficile QCD-32g58]
 gi|260211188|emb|CBA66664.1| putative type IV pilus retraction protein (putative twitching
           mobility protein) [Clostridium difficile CD196]
 gi|260214700|emb|CBE07354.1| putative type IV pilus retraction protein (putative twitching
           mobility protein) [Clostridium difficile R20291]
          Length = 360

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 53/137 (38%), Gaps = 5/137 (3%)

Query: 14  IRKLTKGFASTSLKLKEGITDIISSRRLD-DGVREELEDLLIRSDIGVAVAQKIVEELLT 72
           + ++  GF   S ++      +  ++ +  + + + +E+    +D   + + K  E    
Sbjct: 27  VARVKGGFVKLSEQILTSEVTMQMAKDIAGESIFKVIEEHG-EAD--FSASLKTGERFRV 83

Query: 73  KRYAKDVSVQRVLYDVSELI-HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
             Y +  +    +  ++  I     + L +           ++LV G  G GK+T +  +
Sbjct: 84  NAYRQKGNYAIAIRTITAEIPTFEKLGLPESIKSFTEKHKGLVLVTGPTGSGKSTTLASM 143

Query: 132 SKKMSDAGLKVMLAAGD 148
              +++   K ++   D
Sbjct: 144 INIINEKQQKHIITLED 160


>gi|189345643|ref|YP_001942172.1| ATP-dependent metalloprotease FtsH [Chlorobium limicola DSM 245]
 gi|189339790|gb|ACD89193.1| ATP-dependent metalloprotease FtsH [Chlorobium limicola DSM 245]
          Length = 694

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 25/182 (13%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
           T+   KDV+    +      +   L    K         P  +L+VG  G GKT     L
Sbjct: 192 TRITFKDVAGLDEVKAEVMEVVDFLKDPKKYTKLGGKL-PKGVLLVGPPGTGKT----LL 246

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K ++        +   +                  +       +    L  +A ++A  
Sbjct: 247 AKAVAGEAEVPFFSISGS---------------DFVEMFVGVGAARVRDLFRQAKEKAPC 291

Query: 192 KKVDVLIIDTAGRLHNNSILM----AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
               +  ID  GR      +M         + ++L  +D  A    + ++ AT   + L 
Sbjct: 292 IIF-IDEIDAVGRSRGKGAMMGANDERENTLNQLLVEMDGFATDKGVILMAATNRPDVLD 350

Query: 248 QV 249
             
Sbjct: 351 SA 352


>gi|108803119|ref|YP_643056.1| CRISPR-associated helicase Cas3 family protein protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764362|gb|ABG03244.1| CRISPR-associated helicase, Cas3 family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 821

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 52  LLIRSD----IGVAVAQK-------IVEE-LLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
            LI +D     GV  A++       +VEE +   +             ++E+ H++    
Sbjct: 217 ALIDADKHVSAGVPAAEQGTRIEPALVEEHVRGLKRPAGTPTAPAARRLAEIRHEVREEA 276

Query: 100 SKPFNWDFSHR--PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           +            P V+ +    G GKT    +++ ++ + 
Sbjct: 277 AGRTEDAPLRELYPAVLSLTAPTGSGKTLTALEVALRLRER 317


>gi|325571866|ref|ZP_08147188.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Enterococcus
           casseliflavus ATCC 12755]
 gi|325155648|gb|EGC67851.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Enterococcus
           casseliflavus ATCC 12755]
          Length = 704

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           + K    T  K+KE       +  +DD     E L  + + SD+G    +++ + L  + 
Sbjct: 360 IKKSIEETKQKIKETDQKEKITATIDDVAQSVERLTGIPV-SDMGANDIERL-KNLDKRL 417

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            +K +     +  V++ I +     S+             L VG  GVGKT +  +L+  
Sbjct: 418 KSKVIGQDEAVEMVAKAIRRNRAGFSEG-----DQPIGSFLFVGPTGVGKTELAKQLA-- 470

Query: 135 MSDAGLKVMLAAGD 148
           +   G +  +   D
Sbjct: 471 LDMFGNENAIIRLD 484


>gi|307244814|ref|ZP_07526913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307253768|ref|ZP_07535622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258225|ref|ZP_07539968.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306854259|gb|EFM86465.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306863252|gb|EFM95192.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867685|gb|EFM99530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 500

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGV-GKTTVIGKLSKKMSDAGLKVMLAAG--- 147
           + ++L  ++  F  + S +     +VGV G  GKTT    L++  +  G K  +      
Sbjct: 97  LARILSEIAGAFYANPSEKLT---LVGVTGTNGKTTSAQLLAQWHNLLGGKSAVMGTIGN 153

Query: 148 ----DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ--AQAKKVDVLIIDT 201
                   +A      I   R  ADFV       A  ++     Q  A+A   D+ +   
Sbjct: 154 GLYGKVQDAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEALSYDLAVFTN 213

Query: 202 AGRLHNNSILMAGI 215
             R H +       
Sbjct: 214 LSRDHLDYHKTMEE 227


>gi|291395991|ref|XP_002714655.1| PREDICTED: ABC-transporter-like [Oryctolagus cuniculus]
          Length = 703

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ +           V  +VG NG GK+TV   L       G +++L          I +
Sbjct: 484 PVLQGLTLTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGRLLLDG------NPISE 536

Query: 158 LKIWADRTSADFVCSEIGSDAAAL 181
            +          V  E    + ++
Sbjct: 537 YEHHYLHRQVAVVGQEPVLFSGSV 560


>gi|288554680|ref|YP_003426615.1| ATP-dependent Zn metallopeptidase [Bacillus pseudofirmus OF4]
 gi|298286810|sp|P94304|FTSH_BACPE RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|288545840|gb|ADC49723.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus
           pseudofirmus OF4]
          Length = 679

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K+V E   K   KDV+           + + L    + F+   +  P  +L+VG  G GK
Sbjct: 154 KMVNEDKKKAKFKDVAGADEEKQELVEVVEFLKD-PRKFSAIGARIPKGVLLVGPPGTGK 212

Query: 125 T 125
           T
Sbjct: 213 T 213


>gi|288923975|ref|ZP_06418047.1| sulfate adenylyltransferase, large subunit [Frankia sp. EUN1f]
 gi|288344680|gb|EFC79137.1| sulfate adenylyltransferase, large subunit [Frankia sp. EUN1f]
          Length = 640

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            RP V+   G++G GK+T+   + K++ D G    L  GD  R  
Sbjct: 461 QRPAVVWFTGLSGAGKSTIANLVEKRLHDQGHHTYLLDGDNIRHG 505


>gi|242012194|ref|XP_002426820.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
 gi|212511027|gb|EEB14082.1| ATP-dependent metalloprotease, putative [Pediculus humanus
           corporis]
          Length = 559

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 29/191 (15%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
              + + +  + + +++  L  P  +       P  +L+VG  G GKT     L++ ++ 
Sbjct: 109 EDVKGVDEAKQELKEVVEFLKNPNKFSALGGKLPKGVLLVGPPGTGKT----LLARAVAG 164

Query: 138 AGLKVMLAAGDTFRSAAIDQ---LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKV 194
                       F +A  +    L     R   D       +    +  +          
Sbjct: 165 EARVP------FFHAAGPEFDEILVGQGARRVRDLFKVAKETAPCVIFIDE--------- 209

Query: 195 DVLIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
               ID+ G    NS+L       + ++L  +D    +  + VL AT  +  L +  +  
Sbjct: 210 ----IDSVGSKRTNSVLHPYANQTINQLLSEMDGFHQNEGVIVLGATNRREDLDKALLRP 265

Query: 254 AVAGTTGLIMT 264
                   + T
Sbjct: 266 GRFDVEVTVPT 276


>gi|157280345|gb|ABV29172.1| disease resistance protein R3a-like protein [Solanum demissum]
          Length = 1192

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 28/142 (19%)

Query: 4   QKVASESLSWIRKLT---KGFASTSLKLKEGITDIISSR---RLDDGVREELEDL----- 52
           ++V  E+L    +L    +  A TS +L   +   +S      ++D + + +E L     
Sbjct: 83  EEVNYEAL----RLKVEGQNLAETSNQLVSDLNLCLSDEFLLNIEDKLEDTIETLKDLQE 138

Query: 53  ---LIRSDIGVAVAQKI-VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
              L+    G+   +     +L T+R +  V  +  ++     I  ++  L         
Sbjct: 139 QIGLL----GLK--EYFGSTKLETRRPSTSVDDESDIFGRLSEIEDLIDRLLSE--DASG 190

Query: 109 HRPHVILVVGVNGVGKTTVIGK 130
            +  V+ +VG+ G+GKTT + K
Sbjct: 191 KKLTVVPIVGMGGLGKTT-LAK 211


>gi|115378514|ref|ZP_01465671.1| DNA polymerase III, subunits gamma and tau [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364483|gb|EAU63561.1| DNA polymerase III, subunits gamma and tau [Stigmatella aurantiaca
           DW4/3-1]
          Length = 371

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 1/89 (1%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           H  L  G  GVGKTT    L+K ++        +   T R+          D    D   
Sbjct: 6   HAYLFCGPRGVGKTTAARLLAKALNCE-QGPTASPCGTCRACTEITSGTSVDVAEIDGAS 64

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           +    +   +   A    Q  +  + IID
Sbjct: 65  NNGVENVREIRENAKYLPQRDRHKIYIID 93


>gi|90413315|ref|ZP_01221309.1| hypothetical protein P3TCK_17109 [Photobacterium profundum 3TCK]
 gi|90325716|gb|EAS42179.1| hypothetical protein P3TCK_17109 [Photobacterium profundum 3TCK]
          Length = 343

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 14/102 (13%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG------------DTFRS--AAIDQ 157
            +I   G +G GKTT++ KL   +   GL++ L               D++R   A  DQ
Sbjct: 3   PIIGFAGYSGSGKTTLLEKLIPLLKQQGLRIGLVKHSHHNIDPDKPGKDSYRLRHAGCDQ 62

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             +        +              E   Q    ++D++++
Sbjct: 63  TLLATKSRHMLYFEYSAPERDEPALAECLTQLDHDQLDLVLV 104


>gi|78188831|ref|YP_379169.1| hypothetical protein Cag_0861 [Chlorobium chlorochromatii CaD3]
 gi|78171030|gb|ABB28126.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 532

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 11/162 (6%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +  K  A   S  +   +VS L+ +    ++   N    ++P +++V G++G GK+T+  
Sbjct: 310 VRAKVTAIHASQSKDAPEVSSLMAEHRSYVAHATNCTKHNQPMLLIVCGLSGSGKSTLAA 369

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            ++ ++       + +  +  R A    L+       +D     + ++  A      +  
Sbjct: 370 SIASEL---PAIHLRSDVERKRLAG---LRPLERSPKSDLYSHSMTNNTYAHLLGLARFC 423

Query: 190 QAKKVDVLIIDTAGRLHNNSILM----AGIGKMIRVLKRLDP 227
             +   V+ +D      +N  L            R+L    P
Sbjct: 424 LLEGYCVV-VDATFLRQSNRALFTTLANECNVPYRLLHCTAP 464


>gi|49476134|ref|YP_034175.1| cell division protein ftsH [Bartonella henselae str. Houston-1]
 gi|49238942|emb|CAF28238.1| Cell division protein ftsH [Bartonella henselae str. Houston-1]
          Length = 715

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 65  KIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           K++ E   +   +DV+ V+    D+ E++  +  P  + F       P  +L+VG  G G
Sbjct: 144 KLLNEAQGRVTFQDVAGVEEAKQDLQEIVEFLREP--QKFQRLGGRIPRGVLLVGPPGTG 201

Query: 124 KT 125
           KT
Sbjct: 202 KT 203


>gi|88800833|ref|ZP_01116388.1| ATP-dependent helicase HrpA [Reinekea sp. MED297]
 gi|88776406|gb|EAR07626.1| ATP-dependent helicase HrpA [Reinekea sp. MED297]
          Length = 1299

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 46/130 (35%), Gaps = 19/130 (14%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI-------DQLKI---W 161
            V++V G  G GKTT I KL   M   G   M+      R AA        D+LK     
Sbjct: 93  QVVVVAGETGSGKTTQIPKLC-LMEGRGRAGMIGHTQPRRLAARSVASRIADELKTPLGQ 151

Query: 162 ADRTSADFVCSEIGSDAAALAYEAF------KQAQAKKVDVLIIDTAGRLHNNSILMAGI 215
                  F      S A  L  +          A   + D +IID A     +  +   +
Sbjct: 152 TVGFQVRFTDQSSDSTAIKLMTDGILLNEIQHDAFLSRYDTIIIDEA--HERSLNIDFLL 209

Query: 216 GKMIRVLKRL 225
           G + R+L + 
Sbjct: 210 GYLKRLLPKR 219


>gi|226946313|ref|YP_002801386.1| ATP-dependent metalloprotease FtsH [Azotobacter vinelandii DJ]
 gi|226721240|gb|ACO80411.1| ATP-dependent metalloprotease FtsH [Azotobacter vinelandii DJ]
          Length = 637

 Score = 36.8 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L  P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 161 EAKEEVSELVEFLRDPGKFQRLGGRIPRGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 216

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 217 TISGS---------------DFVEMFVGVGASRVRDMFDQAKKHAPCIIF-IDEIDAVGR 260

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 261 HRGAGLGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLD 306


>gi|330950313|gb|EGH50573.1| peptidase M41, FtsH [Pseudomonas syringae Cit 7]
          Length = 634

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++            +                  +       S    +  +
Sbjct: 201 T----LIAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|315637188|ref|ZP_07892410.1| molybdopterin-guanine dinucleotide biosynthesis protein MobB
           [Arcobacter butzleri JV22]
 gi|315478555|gb|EFU69266.1| molybdopterin-guanine dinucleotide biosynthesis protein MobB
           [Arcobacter butzleri JV22]
          Length = 165

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + +  V+   G +  GKTT I K++  + D   KV +   D
Sbjct: 2   NKKRLVVAFSGPSNSGKTTAIVKVASILQDQSFKVCIVKHD 42


>gi|302185425|ref|ZP_07262098.1| peptidase M41, FtsH [Pseudomonas syringae pv. syringae 642]
          Length = 634

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++            +                  +       S    +  +
Sbjct: 201 T----LIAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|298571444|gb|ADI87784.1| IstB ATP binding domain-containing protein [uncultured Nitrospirae
           bacterium MY4-5C]
          Length = 257

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 4   QKVASESLSWIRKLTKGFASTSL-KLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV 62
           Q+V+   L  + ++T+      L K++E +  I+   R ++       D L+  ++    
Sbjct: 5   QEVSVPEL-IMERITENLNRLKLGKIREMLPVILEESRRNNESCLTFLDRLLEEEVNAKE 63

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
            +++   L       D ++    ++  E + K +  +   F+ +F  R   ++ +G  GV
Sbjct: 64  ERRVRTSLKIAGLPFDKTIDEYDFNFHENLDKRM--VMDLFDLEFVGRHENVIFLGPPGV 121

Query: 123 GKT 125
           GKT
Sbjct: 122 GKT 124


>gi|255067625|ref|ZP_05319480.1| ATP-dependent metalloprotease FtsH [Neisseria sicca ATCC 29256]
 gi|255048099|gb|EET43563.1| ATP-dependent metalloprotease FtsH [Neisseria sicca ATCC 29256]
          Length = 230

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++++   K    DV+    + +  + I   L   ++  +      PH IL+ G  G GK
Sbjct: 148 RLMDKETNKVTFADVAGCDEVKEEVQEIVDYLKSPNRYQSLGGRV-PHGILLAGSPGTGK 206

Query: 125 TTVIGK 130
           T  + K
Sbjct: 207 TL-LAK 211


>gi|242075576|ref|XP_002447724.1| hypothetical protein SORBIDRAFT_06g014590 [Sorghum bicolor]
 gi|241938907|gb|EES12052.1| hypothetical protein SORBIDRAFT_06g014590 [Sorghum bicolor]
          Length = 921

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI-----H 93
           + + D + +E+ D L   DI + V +K  + ++ + Y      + +   +  L+      
Sbjct: 820 KEIADIMLKEVFDRLKAKDINLQVTEKFRDRVVDEGYNPSYGARPLRRAIMRLLEDSLAE 879

Query: 94  KMLMPLSKPFN---WDFSHRPHVILVVGVNGV 122
           KML    K  +    D      VI++ G +GV
Sbjct: 880 KMLAGEVKEGDSAIVDVDSDGKVIVLNGGSGV 911


>gi|269125008|ref|YP_003298378.1| daunorubicin resistance ABC transporter ATPase subunit
           [Thermomonospora curvata DSM 43183]
 gi|268309966|gb|ACY96340.1| daunorubicin resistance ABC transporter ATPase subunit
           [Thermomonospora curvata DSM 43183]
          Length = 345

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            V  V+G NG GKTT +  L+  +   G    +   D  R A
Sbjct: 48  TVYGVLGPNGAGKTTTVRMLATLLRPDGGTARVFGHDVVREA 89


>gi|300774544|ref|ZP_07084407.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300506359|gb|EFK37494.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 488

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 12/103 (11%)

Query: 24  TSLKLKEGITDIISSRRLDDGVR-EELEDLLIRSDIGVA---------VAQKIVEELLTK 73
           T  ++ E I  I  S  L+D +  EE E+  + S++ +            + I+ E+   
Sbjct: 246 TKPQISETIPSIFDSETLEDEILIEENEEQFVASNVSIEQGEMASETSNVENILSEIKND 305

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
             A++   + +L +V +   + ++ + KP   +    P     
Sbjct: 306 HSAEETKEESILAEVYD--RRKIVEIDKPVREETDKNPSDESF 346


>gi|217966655|ref|YP_002352161.1| ABC transporter [Dictyoglomus turgidum DSM 6724]
 gi|217335754|gb|ACK41547.1| ABC transporter related [Dictyoglomus turgidum DSM 6724]
          Length = 274

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 77/226 (34%), Gaps = 32/226 (14%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           +V     +Y+V   + + +  + K  N+    R  ++ +VG +G GKTT   K+  ++  
Sbjct: 5   EVKNLNKIYEVGLFVRRQIHAV-KSINFSVE-RGEIVSLVGESGSGKTTT-AKMILRL-- 59

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                   +GD      ++ + +W D  + +   +      A          Q   +D +
Sbjct: 60  ----EKPTSGDI----IVEGINVWKDIKTVEDKKNYYRKVHAVFQDPFASYNQFYPIDRI 111

Query: 198 ------IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM 251
                 +ID       +  L+      + +  +         L      +G    R +  
Sbjct: 112 LHQALRLIDVDPNNPKSKELIEEALIHVGLEPKNILGKYPHQL------SGGEKQRIMIA 165

Query: 252 FHAVAGTTGLI----MTKMDGTARGGGLI---PIVVTHKIPVYFLG 290
              +   + +I    ++ +D + RGG +     +       + F+ 
Sbjct: 166 RCWLLKPSLIIADEPVSMIDASTRGGIIKLFENLRDETGTSIIFIT 211


>gi|207724474|ref|YP_002254871.1| clpa/b-type chaperone protein [Ralstonia solanacearum MolK2]
 gi|206589695|emb|CAQ36656.1| clpa/b-type chaperone protein [Ralstonia solanacearum MolK2]
          Length = 908

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 36/209 (17%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++EL  +L                L     A+ +     L  +++ +      L  P  
Sbjct: 593 VKDELRTVL---------------NLKPLLAARVIGQDHALQAIAQRVRTASANLEDP-- 635

Query: 105 WDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWA 162
              +    V L  G +GVGKT T +  L+  +     K++      ++ A ++  LK   
Sbjct: 636 ---NKPRGVFLFAGPSGVGKTETALA-LADILYGGERKLVTINMSEYQEAHSVSGLK--- 688

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                    S  G           +  +     V+++D   + H + + M         +
Sbjct: 689 --------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGEM 740

Query: 223 KRLD--PHAPHSVLQVLDATTGQNALRQV 249
              +  P    + + +L +  G +A+ Q 
Sbjct: 741 DDAEGRPIDFRNTIIILTSNVGSSAIMQA 769


>gi|162455444|ref|YP_001617811.1| ATP-dependent Clp protease ATP-binding subunit [Sorangium
           cellulosum 'So ce 56']
 gi|161166026|emb|CAN97331.1| ATP-dependent Clp protease, ATP-binding subunit,two ATP-binding
           domains [Sorangium cellulosum 'So ce 56']
          Length = 790

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E+L+ K   + + +       SE + + L                 IL+VG  GVGKTT 
Sbjct: 210 EDLVEKAARQRLPLAVG---ESEELERALPLFDAARATSMPS----ILLVGGPGVGKTTW 262

Query: 128 IGKLSKKM 135
           + +L+++ 
Sbjct: 263 VHRLARRF 270


>gi|5739521|gb|AAD50509.1|AF176984_1 TAP2 protein [Homo sapiens]
          Length = 372

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 169 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 221

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 222 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 281

Query: 218 MIRVLKR 224
              V ++
Sbjct: 282 YTDVGEK 288


>gi|1066126|gb|AAB36587.1| ABC-transporter [Gorilla gorilla]
          Length = 703

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +   H   V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTL-HPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|66047414|ref|YP_237255.1| peptidase M41, FtsH [Pseudomonas syringae pv. syringae B728a]
 gi|237798556|ref|ZP_04587017.1| peptidase M41, FtsH [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|289676017|ref|ZP_06496907.1| peptidase M41, FtsH [Pseudomonas syringae pv. syringae FF5]
 gi|63258121|gb|AAY39217.1| Peptidase M41, FtsH [Pseudomonas syringae pv. syringae B728a]
 gi|330895313|gb|EGH27651.1| peptidase M41, FtsH [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330937939|gb|EGH41726.1| peptidase M41, FtsH [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330981083|gb|EGH79186.1| peptidase M41, FtsH [Pseudomonas syringae pv. aptata str. DSM
           50252]
 gi|331021409|gb|EGI01466.1| peptidase M41, FtsH [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 634

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++            +                  +       S    +  +
Sbjct: 201 T----LIAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|320322535|gb|EFW78628.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 634

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++            +                  +       S    +  +
Sbjct: 201 T----LIAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|320100466|ref|YP_004176058.1| ABC transporter-like protein [Desulfurococcus mucosus DSM 2162]
 gi|319752818|gb|ADV64576.1| ABC transporter related protein [Desulfurococcus mucosus DSM 2162]
          Length = 463

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            R  V+ +VG NG GK+T++  L+  +   G +V+ AA   F
Sbjct: 274 RRGEVVALVGPNGSGKSTILKTLAGFLKPLGGEVINAARGLF 315


>gi|310830010|ref|YP_003962367.1| CobW-like protein with a nucleotide-binding domain [Eubacterium
           limosum KIST612]
 gi|308741744|gb|ADO39404.1| CobW-like protein with a nucleotide-binding domain [Eubacterium
           limosum KIST612]
          Length = 207

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           P + L  G  G GKTT++   ++ +++ G K+ +   +
Sbjct: 5   PKLFLFSGFLGSGKTTLLNLTARYLTEKGYKIAMIINE 42


>gi|297157161|gb|ADI06873.1| LAO/AO transport system ATPase [Streptomyces bingchenggensis BCW-1]
          Length = 318

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 20/170 (11%)

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
            +D+       +VE+    R      +  ++   S  + +++  L+           +V+
Sbjct: 1   MADV--PT---LVEQARQGRPRAVARLISLIEGDSPQLREVMAALAPLAGGA-----YVV 50

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRTSA 167
            V G  GVGK+T    L      AG +V + A D        A+      +   A     
Sbjct: 51  GVTGSPGVGKSTSTSALVTAYRKAGKRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGV 110

Query: 168 DFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214
                        LA+   +A +   A   DV++++T G   +   + A 
Sbjct: 111 YIRSMATRGHLGGLAWAAPQAIRVLDAAGCDVVLVETVGVGQSEVEIAAQ 160


>gi|256763475|ref|ZP_05504055.1| ATP-dependent Clp protease [Enterococcus faecalis T3]
 gi|256684726|gb|EEU24421.1| ATP-dependent Clp protease [Enterococcus faecalis T3]
          Length = 704

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           + K    T  K+KE       +  +DD     E L  + + SD+G    +++ + L  + 
Sbjct: 360 IKKSIEETKQKIKETDQKEKITATIDDVAQSVERLTGIPV-SDMGANDIERL-KNLDKRL 417

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            +K +     +  V++ I +     S+             L VG  GVGKT +  +L+  
Sbjct: 418 KSKVIGQDEAVEMVAKAIRRNRAGFSEG-----DQPIGSFLFVGPTGVGKTELAKQLA-- 470

Query: 135 MSDAGLKVMLAAGD 148
           +   G +  +   D
Sbjct: 471 LDMFGNENAIIRLD 484


>gi|251811482|ref|ZP_04825955.1| arsenite-transporting ATPase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874771|ref|ZP_06283650.1| putative arsenite-transporting ATPase [Staphylococcus epidermidis
           SK135]
 gi|251804986|gb|EES57643.1| arsenite-transporting ATPase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296487|gb|EFA89002.1| putative arsenite-transporting ATPase [Staphylococcus epidermidis
           SK135]
 gi|329732172|gb|EGG68526.1| putative arsenite-transporting ATPase [Staphylococcus epidermidis
           VCU144]
          Length = 576

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + I +     +K  +   + +   +  +G  GVGKTTV  +L+  +S+ G +V+LA  D
Sbjct: 311 DFIVEDHPQFNKLIDEIENSKVQYLFTMGKGGVGKTTVATQLATVLSNKGYRVLLATTD 369


>gi|163851362|ref|YP_001639405.1| putative ABC transporter ATP-binding protein [Methylobacterium
           extorquens PA1]
 gi|218530170|ref|YP_002420986.1| ABC transporter ATP-binding protein [Methylobacterium
           chloromethanicum CM4]
 gi|240138456|ref|YP_002962928.1| putative ATP-binding protein with two ATPase domains, ABC
           transporter related [Methylobacterium extorquens AM1]
 gi|254561120|ref|YP_003068215.1| ABC transporter ATP-binding protein [Methylobacterium extorquens
           DM4]
 gi|163662967|gb|ABY30334.1| ABC transporter related [Methylobacterium extorquens PA1]
 gi|218522473|gb|ACK83058.1| ABC transporter related [Methylobacterium chloromethanicum CM4]
 gi|240008425|gb|ACS39651.1| putative ATP-binding protein with two ATPase domains, ABC
           transporter related [Methylobacterium extorquens AM1]
 gi|254268398|emb|CAX24355.1| putative ATP-binding protein with two ATPase domains, ABC
           transporter related [Methylobacterium extorquens DM4]
          Length = 550

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 13/103 (12%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMP---LSKPF-------NWDFSHRPHVIL-V 116
           EEL+ K+  K  +  +++  + E + + ++    L+K F       +  F   P  I+ V
Sbjct: 290 EELVAKQNNKVDAAAQIVIPIDERLGQNVIEFEHLNKAFGDRLLIEDLSFKLPPGGIVGV 349

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           +G NG GKTT+   ++ +    G ++ +  G+T R   +DQ +
Sbjct: 350 IGPNGAGKTTLFKMITGQEKPDGGRIEV--GETVRLGYVDQSR 390


>gi|157737464|ref|YP_001490147.1| molybdopterin-guanine dinucleotide biosynthesis protein [Arcobacter
           butzleri RM4018]
 gi|157699318|gb|ABV67478.1| molybdopterin-guanine dinucleotide biosynthesis protein [Arcobacter
           butzleri RM4018]
          Length = 165

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + +  V+   G +  GKTT I K++  + D   KV +   D
Sbjct: 2   NKKRLVVAFSGPSNSGKTTAIVKVASILQDQSFKVCIVKHD 42


>gi|47059739|gb|AAT09451.1| putative NBS-LRR type disease resistance protein [Prunus persica]
          Length = 917

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 13/105 (12%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGK-LSKK--------MSDAGLKVMLAAGDTFRSAAI 155
            +      V+ VVG+ G GKTT++ K  + +         +   +       D FRS   
Sbjct: 180 LNEEQHLTVVSVVGMGGSGKTTLVAKTFANETVKRHFDSYAWITVSQTYVIEDLFRSL-- 237

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
             +K        D     I      L        ++K+  V++ D
Sbjct: 238 --IKELHQTRKEDVPADPISMSYRDLLQLLVNYLESKRYLVVLDD 280


>gi|18314535|gb|AAH21954.1| Methylmalonic aciduria (cobalamin deficiency) type A [Mus musculus]
          Length = 415

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 78/233 (33%), Gaps = 48/233 (20%)

Query: 64  QKIVEEL-----------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           Q+ V+ L           L +      S      ++++++ + ++ L +        +P 
Sbjct: 80  QRFVDRLYTGLVKGQRACLAEAITLVESTHTRKRELAQVLLQRVLALQREQELRNQGKPL 139

Query: 113 VILV--VGVNGVGKTTVI---GKLSKKMSDAGLKVMLAAGDTFR-------SAAIDQLKI 160
              V   G  G GK+T I   GK+   +++ G ++ + A D               ++  
Sbjct: 140 TFRVGLSGPPGAGKSTFIECFGKM---LTEQGHRLSVLAVDPSSCTSGGSLLGDKTRMIE 196

Query: 161 WADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +   +A    S        +     EA    +    D+++I+T G   +          
Sbjct: 197 LSRDMNAYIRPSPTSGTLGGVTRTTNEAIVLCEGGGYDIILIETVGVGQSE--------- 247

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM-FHAVAGTTGLIMTKMDGT 269
                          +  +L    G + L+ ++     +A    +++TK DG 
Sbjct: 248 -------FAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADL--VVITKSDGD 291


>gi|54308437|ref|YP_129457.1| hypothetical protein PBPRA1244 [Photobacterium profundum SS9]
 gi|46912866|emb|CAG19655.1| hypothetical protein PBPRA1244 [Photobacterium profundum SS9]
          Length = 343

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 14/102 (13%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG------------DTFRS--AAIDQ 157
            +I   G +G GKTT++ KL   +   GL++ L               D++R   A  DQ
Sbjct: 3   PIIGFAGYSGSGKTTLLEKLIPLLKQQGLRIGLVKHSHHNIDPDKPGKDSYRLRHAGCDQ 62

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             +        +              E   Q    ++D++++
Sbjct: 63  TLLATKSRHMLYFEYTDLKRDEPALAECLAQLDHNQLDLVLV 104


>gi|88797616|ref|ZP_01113205.1| cell division protein FtsH [Reinekea sp. MED297]
 gi|88779788|gb|EAR10974.1| cell division protein FtsH [Reinekea sp. MED297]
          Length = 643

 Score = 36.8 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 63/197 (31%), Gaps = 26/197 (13%)

Query: 65  KIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +++ E   K   KDV+ V+    DV EL+  +  P    +       P  +L+VG  G G
Sbjct: 144 RLLSEDQIKTTFKDVAGVEEAKEDVQELVEFLRDP--GKYQRLGGKIPRGVLMVGPPGTG 201

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KT     L+K ++        +   +                  +       S    +  
Sbjct: 202 KT----LLAKAIAGEARVPFFSISGS---------------DFVEMFVGVGASRVRDMFE 242

Query: 184 EAFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           +A KQA      +  ID  GR                + ++L  +D    +  + V+ AT
Sbjct: 243 QAKKQAPCIIF-IDEIDAVGRSRGVGIGGGNDEREQTLNQLLVEMDGFEVNDGIIVIAAT 301

Query: 241 TGQNALRQVEMFHAVAG 257
              + L           
Sbjct: 302 NRPDVLDPALQRPGRFD 318


>gi|332186790|ref|ZP_08388532.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas
           sp. S17]
 gi|332013123|gb|EGI55186.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sphingomonas
           sp. S17]
          Length = 420

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 42  DDGVREELEDLLI-RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE +  L+ + D GV   Q+I   L      +    +RVL       +K L   +
Sbjct: 42  NDIIREETKSALVSKKDGGVPTPQEICNVLDDYVIGQK-QAKRVLSVAVHNHYKRLNHGA 100

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           K  + + +     IL+VG  G GKT +   L++ +
Sbjct: 101 KGADVELAKSN--ILLVGPTGCGKTLLAQTLARIL 133


>gi|319779484|ref|YP_004130397.1| ATP-dependent helicase [Taylorella equigenitalis MCE9]
 gi|317109508|gb|ADU92254.1| ATP-dependent helicase [Taylorella equigenitalis MCE9]
          Length = 1273

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 22/127 (17%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +++ L  LSK           VI+V G  G GKTT + KL   +   G K ++      R
Sbjct: 21  VNQKLEELSKLIKNH-----QVIIVSGETGSGKTTQLPKLCLAL-GRGRKGLIGHTQPRR 74

Query: 152 SAAIDQLKIWADRTS----------ADFVCSEIGSDAAALAYEAFKQAQAK------KVD 195
            AAI   K  ++               F      +    L  +    A+ +      K D
Sbjct: 75  IAAISVAKRISEELGPQRAPEVAYQVRFQDKSTSNTKIKLMTDGILLAETQSDKLLKKYD 134

Query: 196 VLIIDTA 202
            +IID A
Sbjct: 135 TIIIDEA 141


>gi|302871679|ref|YP_003840315.1| ABC transporter related [Caldicellulosiruptor obsidiansis OB47]
 gi|302574538|gb|ADL42329.1| ABC transporter related [Caldicellulosiruptor obsidiansis OB47]
          Length = 597

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM----PLSKPFNWDFS---HR 110
           + +A  ++I E L T+   +D      L  +   I    +       KP   D       
Sbjct: 322 VAMASTERIFEILDTQPDVQDSPYAYDLPPIRGEITFENVCFSYDEEKPVLKDVPFTIKA 381

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
              I +VG  G GKTT+I  +++       ++++   D
Sbjct: 382 GETIALVGETGAGKTTIINLIARFYDPQKGRILIDGHD 419


>gi|301167159|emb|CBW26738.1| putative ABC transporter, ATP-binding/permease protein
           [Bacteriovorax marinus SJ]
          Length = 596

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           + K  N+  S     I +VG  G GKTT +  L++      
Sbjct: 375 VLKDINFSISEGEK-IGLVGSTGCGKTTTVSLLARLYDFQK 414


>gi|298488449|ref|ZP_07006480.1| Cell division protein ftsH [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298157074|gb|EFH98163.1| Cell division protein ftsH [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 637

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 145 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 203

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++            +                  +       S    +  +
Sbjct: 204 T----LIAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 244

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 245 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 303

Query: 242 GQNALR 247
             + L 
Sbjct: 304 RPDVLD 309


>gi|294508841|ref|YP_003572900.1| ABC transporter ATP-binding protein [Salinibacter ruber M8]
 gi|294345170|emb|CBH25948.1| ABC transporter, ATP-binding protein [Salinibacter ruber M8]
          Length = 669

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            PL +  +W  +  PH + +VG NG GKTT           AG + + +   T    +I 
Sbjct: 14  DPLFQNLSWTITPEPHRVGLVGPNGAGKTT------LLKVIAGDQRVDSGTITREGVSIG 67

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
            L+        D    E    A        +Q Q    ++  ID     H +      + 
Sbjct: 68  YLEQDVQELPEDRTVREEALRAFEEVLALEEQEQEISRELEAID-----HESDRHEKLLN 122

Query: 217 KMIRVLKRLDPHAPHSV 233
           ++ RV +RLD    H +
Sbjct: 123 RLHRVQERLDAQDAHRI 139


>gi|257482268|ref|ZP_05636309.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289624595|ref|ZP_06457549.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646954|ref|ZP_06478297.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|320329996|gb|EFW85983.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330868239|gb|EGH02948.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330987048|gb|EGH85151.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 634

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++            +                  +       S    +  +
Sbjct: 201 T----LIAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|219682653|ref|YP_002469036.1| permease protein of ABC transporter system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219620303|gb|ACL28460.1| probable permease protein of ABC transporter system
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|289177945|gb|ADC85191.1| Multidrug/protein/lipid ABC transporter family, ATP-binding and
           permease protein [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 615

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 26/182 (14%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSAAIDQLKIWADRT----- 165
           + +VG  G GKTT++  L +    AG K+ +   DT    R    DQ  +    T     
Sbjct: 405 VAIVGPTGAGKTTMVNLLMRFYEIAGGKISIDGIDTKSVPRWNVHDQFSMVLQDTWVFNG 464

Query: 166 ----SADFVCSEIGSDAAALAYEAFK-----QAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
               +  +   ++  +    A  A       ++     D ++ ++A        L+    
Sbjct: 465 TVRENVAYAKEDVTDEQVVAACRAVGLDRYIRSLPNGYDTVLDESATLSQGQKQLLTIAR 524

Query: 217 KMI---------RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            M+              +D      +   +D  T       +    +      +I+   D
Sbjct: 525 AMVQDSPILILDEATSSVDTRTEELIQTAMDKLTEGRTSFVIAHRLSTIRDADMILVMRD 584

Query: 268 GT 269
           G 
Sbjct: 585 GD 586


>gi|297190620|ref|ZP_06908018.1| ABC transporter ATP-binding protein [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197717930|gb|EDY61838.1| ABC transporter ATP-binding protein [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 547

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           D  V   +   +E+  +  +  V   R +  + +L  +    +   F       P  I +
Sbjct: 315 DEAVEAVRDD-DEIRIELPSTQVHPGRGVLRLKDLRLQYGAEVKGEFEV---RGPERIAL 370

Query: 117 VGVNGVGKTT---VIG 129
           VG NG GKTT    I 
Sbjct: 371 VGRNGAGKTTLLRTIA 386


>gi|149921067|ref|ZP_01909526.1| cell division protein FtsH [Plesiocystis pacifica SIR-1]
 gi|149818071|gb|EDM77528.1| cell division protein FtsH [Plesiocystis pacifica SIR-1]
          Length = 651

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K   KDV+      D  E I   L    K         P  +L++G  G GK
Sbjct: 151 RLLNEHQQKVTFKDVAGVEEARDEVEEIIDFLRDTRKYMRVG-GRIPKGVLLMGPPGTGK 209

Query: 125 T 125
           T
Sbjct: 210 T 210


>gi|89900890|ref|YP_523361.1| ATP-dependent helicase HrpA [Rhodoferax ferrireducens T118]
 gi|89345627|gb|ABD69830.1| ATP-dependent helicase HrpA [Rhodoferax ferrireducens T118]
          Length = 1298

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 12/140 (8%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            VI+V G  G GKTT + K++  M   G   +       +     Q +  A  + A  + 
Sbjct: 28  QVIIVCGETGSGKTTQLPKIALAM---GRGKLNYPPGRGKLIGHTQPRRIAASSVAKRIA 84

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLDPHA 229
            E+ +    +     +       D L  DT+ +L  + IL+A      +++    +    
Sbjct: 85  EELKTTLGDVVGFKVR-----FQDRLSRDTSVKLMTDGILLAETQTDPLLKAYDTIIIDE 139

Query: 230 PHSVLQVLDATTGQNALRQV 249
            H     +D   G   LRQ+
Sbjct: 140 AHERSLNIDFLLGY--LRQI 157


>gi|71735142|ref|YP_276318.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555695|gb|AAZ34906.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 637

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 145 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 203

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++            +                  +       S    +  +
Sbjct: 204 T----LIAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 244

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 245 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 303

Query: 242 GQNALR 247
             + L 
Sbjct: 304 RPDVLD 309


>gi|326470498|gb|EGD94507.1| hypothetical protein TESG_02023 [Trichophyton tonsurans CBS 112818]
          Length = 579

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA--GDTFRSAAIDQLKIWAD 163
               +P VI + GV+G GKTT++ +L + ++D        +   D      + Q K W+ 
Sbjct: 8   SAQEKPVVIGLYGVSGSGKTTLLNQLKRTLNDEHFLFYEGSQVIDEVTPGGLAQFKGWSR 67

Query: 164 RTSAD 168
                
Sbjct: 68  ERQVT 72


>gi|325123185|gb|ADY82708.1| cell division protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 598

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 25/168 (14%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  + + +++  L  P  +    +  P  +L+VG  G GKT     L+K ++        
Sbjct: 131 EAKQEVVEIVDFLKDPAKFKRLGATIPRGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 186

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           +   +                  +       S    +  +A + A      +  ID  GR
Sbjct: 187 SISGS---------------DFVEMFVGVGASRVRDMFEQAKRHAPCIIF-IDEIDAVGR 230

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                           + ++L  +D    +  + V+ AT   + L + 
Sbjct: 231 HRGSGTGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRVDVLDKA 278


>gi|315607707|ref|ZP_07882701.1| ATP-dependent metallopeptidase HflB [Prevotella buccae ATCC 33574]
 gi|315250643|gb|EFU30638.1| ATP-dependent metallopeptidase HflB [Prevotella buccae ATCC 33574]
          Length = 690

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 25/177 (14%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           KDV+ Q       E I + L    K  N      P   L+VG  G GKT     L+K ++
Sbjct: 193 KDVAGQAGAKQEVEEIVEFLKNPKKYTNLG-GKIPKGALLVGPPGTGKT----LLAKAVA 247

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                   +   +                  +       S    L  +A ++A      +
Sbjct: 248 GEAGVPFFSMSGS---------------DFVEMFVGVGASRVRDLFRQAKEKAPCIIF-I 291

Query: 197 LIIDTAGRLHNNSILMA----GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             ID  GR    + +M         +  +L  +D    +S + +L AT   + L   
Sbjct: 292 DEIDAVGRARAKNSMMNGNSEQENTLNALLTEMDGFGTNSGVIILAATNRVDMLDAA 348


>gi|299140632|ref|ZP_07033770.1| negative regulator of genetic competence ClpC/MecB [Prevotella oris
           C735]
 gi|298577598|gb|EFI49466.1| negative regulator of genetic competence ClpC/MecB [Prevotella oris
           C735]
          Length = 845

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 56  SDI-----GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFS 108
           +D+     GV V Q+I E    +       ++  +      I KM+  + +      D +
Sbjct: 509 ADVVSMMAGVPV-QRIAEAENVRLRNMGTVLKEQVIAQDNAIEKMVKAIQRNRVGIKDPN 567

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKM 135
           H   V + +G  GVGKT +  KL++ M
Sbjct: 568 HPIGVFMFLGPTGVGKTYLAKKLAEYM 594


>gi|293556673|ref|ZP_06675237.1| ClpE [Enterococcus faecium E1039]
 gi|291601135|gb|EFF31423.1| ClpE [Enterococcus faecium E1039]
          Length = 698

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 19/145 (13%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           + + ++L      +D +V R    V++ I +  + L+K      S      L VG  GVG
Sbjct: 386 KNLADDLKAHVIGQDNAVDR----VAKAIRRNRVGLNKQNRPIGS-----FLFVGPTGVG 436

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KT +  +L+ ++   G +  +   D          +     + +  + S  G      A 
Sbjct: 437 KTELAKQLAYEL--FGSQDSMIRFDMS--------EYMEKHSVSKLIGSPPGYVGYEEAG 486

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNN 208
           +  ++ +     ++++D   + H +
Sbjct: 487 QLTEKVRRNPYSLVLLDEVEKAHPD 511


>gi|297564222|ref|YP_003683195.1| Anion-transporting ATPase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848671|gb|ADH70689.1| Anion-transporting ATPase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 381

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA----IDQLKIWADRTSAD 168
           +I+  G  GVGKTT    L  + ++ G + ++   D  R  A    ++ L          
Sbjct: 23  IIVCCGAGGVGKTTTAAALGLRAAERGRRAVVITVDPARRLAQSLGLESLDDTPRPVPLP 82

Query: 169 FVCSEIGSDAAALAYEAFKQAQAKKVD 195
                            F +   +  D
Sbjct: 83  EGSGGSLHAMMLDMKRTFDEVVREHAD 109


>gi|162448305|ref|YP_001610672.1| fructose-2,6-bisphosphate 2-phosphatase [Sorangium cellulosum 'So
           ce 56']
 gi|161158887|emb|CAN90192.1| Fructose-2,6-bisphosphate 2-phosphatase [Sorangium cellulosum 'So
           ce 56']
          Length = 420

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 6/113 (5%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
                 P V+ +VG+   GKT++  K+++ +S  G    L     +R A    L      
Sbjct: 4   LARDSSPIVLAMVGLPARGKTSIARKIARYLSWLGHPTRLFNVGNYRRA---HLGTAQPH 60

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQ---AKKVDVLIIDTAGRLHNNSILMAG 214
              D   +E       +A  A        +   +V I D          L+  
Sbjct: 61  QFFDPNNTEGRQALLGMAMTALDDLIGWLSSGGEVAIYDATNSTRARRNLVIE 113


>gi|126459908|ref|YP_001056186.1| AAA ATPase [Pyrobaculum calidifontis JCM 11548]
 gi|126249629|gb|ABO08720.1| AAA ATPase [Pyrobaculum calidifontis JCM 11548]
          Length = 537

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG-DTFRSAAIDQLKIWADRTSADFV 170
           H +LVVG  G GKT  + +L+ +++ AG +V+       F   A + L +          
Sbjct: 160 HHLLVVGTTGSGKTVFVKELALQLAQAGHRVVALDAVGHFYHLAYNGLTV---NVILPTT 216

Query: 171 CSEIGSDAAALAYEAFKQAQA 191
              +     A+   A  +A  
Sbjct: 217 ARLMRRGPRAVVRRAVAKAAW 237


>gi|194364710|ref|YP_002027320.1| twitching motility protein [Stenotrophomonas maltophilia R551-3]
 gi|194347514|gb|ACF50637.1| twitching motility protein [Stenotrophomonas maltophilia R551-3]
          Length = 405

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 41/143 (28%), Gaps = 25/143 (17%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +IL VG  G GK+T    L+      +      +   +      I+ +            
Sbjct: 157 IILFVGATGTGKSTS---LAAMIGYRNQNSTGHIITIED----PIEFVHKHEGCIITQRE 209

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                    A      +QA     DV++I   G +     +   I               
Sbjct: 210 VGIDTDSWEAALKNTLRQAP----DVIMI---GEVRTREGMDHAIAF---------AETG 253

Query: 231 HSVLQVLDATTGQNALRQVEMFH 253
           H VL  L A     A+ ++  F 
Sbjct: 254 HLVLCTLHANNANQAMDRIVNFF 276


>gi|320335163|ref|YP_004171874.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Deinococcus maricopensis DSM 21211]
 gi|319756452|gb|ADV68209.1| diguanylate cyclase and metal dependent phosphohydrolase
           [Deinococcus maricopensis DSM 21211]
          Length = 899

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%)

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
              +   AA  T R  A   L++      AD +  E  +     A  A   A+    D +
Sbjct: 286 KVAQACWAAARTPRVQAGQTLRVTCSVGVADVLPGEAPAATYKRADAALYAAKTAGRDQV 345

Query: 198 IIDTAGRLH 206
           ++  AGR H
Sbjct: 346 VVARAGRHH 354


>gi|301344660|ref|ZP_07225401.1| putative ClpA/B-type chaperone [Acinetobacter baumannii AB056]
          Length = 761

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 59  GVAVAQKIVEELL-----TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           G+ V + + +E+        +  + V  Q   Y +++L+  +    SK    D +    V
Sbjct: 422 GIPVGKMVNDEIKQILTLEDKLGERVMGQD--YALTQLVQGI--KTSKAKLEDPNKPQGV 477

Query: 114 ILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
            L+VG +GVGKT T +  L+ ++      ++              +  + +  +   +  
Sbjct: 478 FLLVGPSGVGKTETALA-LANELYGGEQHLITIN-----------MSEYQEAHTVSSLKG 525

Query: 173 EIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
                          +A  +    V+++D   + H++   +         L+  +     
Sbjct: 526 APPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVID 585

Query: 232 --SVLQVLDATTGQNALRQV 249
             +   +L + TG +A+ Q 
Sbjct: 586 FKNTTILLTSNTGSSAIMQA 605


>gi|289523078|ref|ZP_06439932.1| LAO/AO transport system ATPase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503621|gb|EFD24785.1| LAO/AO transport system ATPase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 314

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF---SHRPHVILVVGVNGVG 123
           ++ L+ K    D    R +  +  L+     P S     +    + + H+I V G  G G
Sbjct: 1   MDHLVEKALEGD---HRAIARLISLVENE-SPFSSQIMANLYAHTGKAHIIGVTGSPGAG 56

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSEIGS 176
           K+T++ KL   +     K+ + A D    F   AI      ++  A              
Sbjct: 57  KSTLLDKLIDNLKRMDKKIGVIAVDPTSPFSGGAILGDRLRMQSHALDPDVFIRSMGTRG 116

Query: 177 DAAALAYEAFKQA---QAKKVDVLIIDTAGRLHNN 208
               L+  A++ A    A   DV+ I+T G   + 
Sbjct: 117 SLGGLSRAAYEAAMILDACGKDVIFIETVGVGQSE 151


>gi|266705974|gb|ACY78312.1| ParA [Paracoccus aminophilus]
          Length = 399

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN----GVGKTTVIGKL 131
            KD +  R        I++M        +      P   LV+ V     GVGK+T +  L
Sbjct: 73  EKDETTGRRNGYTLGEINRMREVFGTQPHRKPEDPP---LVLAVQNFKGGVGKSTTVVHL 129

Query: 132 SKKMSDAGLKVMLAAGDTF 150
           ++  +  G +V +   D+ 
Sbjct: 130 AQYFALKGYRVCVIDCDSQ 148


>gi|269103357|ref|ZP_06156054.1| hypothetical protein VDA_002783 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163255|gb|EEZ41751.1| hypothetical protein VDA_002783 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 507

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 22/141 (15%)

Query: 24  TSLKLKEGITDIISSRRLDDGVREE--LEDLLIRSDIGVAVAQ-KIVEELLTKRYAKDVS 80
           T   L  G+ DI     L + V++E      L+R D+ ++V + +    +L         
Sbjct: 101 TREALLNGLKDIAFDSSLIELVQDEDVFRTSLLR-DVSLSVIKGQF-SRVLDGSSPLTDF 158

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH--VILVVGVNGVGKTT--------VIGK 130
             + +  V +     +  +   F+     +P   +  ++G NGVGKTT        V  K
Sbjct: 159 EFKFVRPVQD----KMSGIELKFSVKVGDKPTSNIHAIIGRNGVGKTTLLNGMIDAVTSK 214

Query: 131 ---LSKKMSDAGLKVMLAAGD 148
              ++K     G +      D
Sbjct: 215 GQSVAKFYDVEGWRNNPIDTD 235


>gi|260436129|ref|ZP_05790099.1| ATPase involved in chromosome partitioning [Synechococcus sp. WH
           8109]
 gi|260414003|gb|EEX07299.1| ATPase involved in chromosome partitioning [Synechococcus sp. WH
           8109]
          Length = 361

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 58/194 (29%), Gaps = 25/194 (12%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G  GVGK+TV   L+  ++  GL+V L   D +   A   L +            +    
Sbjct: 115 GKGGVGKSTVAVNLACALAQTGLRVGLLDADIYGPNAPTMLGVADQTPEVQGSGDQQRIV 174

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV- 236
                  A         D   +   G +         +  +IR            +L V 
Sbjct: 175 PIETCGIAMVSMGLLIDDHQPVIWRGPM---------LNGIIRQFLYQAEWGKRDILIVD 225

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMD-----GTARGGGLIPIVVTHKIPVYFLGV 291
           L   TG   L             G+++           AR G  + +     IPV  LGV
Sbjct: 226 LPPGTGDAQLSLA----QAVPMAGVVIVTTPQQVSLQDARRG--LAMFRQMGIPV--LGV 277

Query: 292 GEGINDLEPFVAKD 305
            E ++   P     
Sbjct: 278 VENMSAFIP--PDR 289


>gi|257141371|ref|ZP_05589633.1| ClpA/B type protease [Burkholderia thailandensis E264]
          Length = 907

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 25/134 (18%)

Query: 44  GVREELEDLL--IRSD---IGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDV-- 88
               ELE  L  ++ D   +   V + IV E+        + +    +VS  R L D   
Sbjct: 545 DALRELERALSSLQGDCAFVFPEVNEAIVAEIMSDWTGIPVGRMVTDEVSAVRALPDTLA 604

Query: 89  ------SELIHKM--LMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAG 139
                  + +H++   +  ++    D      V L+ G +GVGKT T +  L++ +    
Sbjct: 605 ARVIGQRDALHQICDRVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALA-LAEALYGGE 663

Query: 140 LKVMLAAGDTFRSA 153
             ++      ++ A
Sbjct: 664 QNLITINMSEYQEA 677


>gi|302559362|ref|ZP_07311704.1| ion-transporting ATPase [Streptomyces griseoflavus Tu4000]
 gi|302476980|gb|EFL40073.1| ion-transporting ATPase [Streptomyces griseoflavus Tu4000]
          Length = 438

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA----IDQLKIWADRT-SA 167
           +++  G  GVGKTT    L  + ++ G KV++   D  R  A    ID L     R    
Sbjct: 37  IVVCCGSGGVGKTTTAAALGLRAAERGRKVVVLTIDPARRLAQSMGIDSLDNTPRRVKGV 96

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVD 195
           D                 F +      D
Sbjct: 97  DDSAGGELHAMMLDMKRTFDEIVEAHSD 124


>gi|242088601|ref|XP_002440133.1| hypothetical protein SORBIDRAFT_09g026620 [Sorghum bicolor]
 gi|241945418|gb|EES18563.1| hypothetical protein SORBIDRAFT_09g026620 [Sorghum bicolor]
          Length = 546

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 46/138 (33%), Gaps = 23/138 (16%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           KR   + S +  +  ++         ++   + D       IL++G  G GKT +   L+
Sbjct: 130 KRIYNESSNKCSVKSLA------RGGVTASCDDDIELEKSNILLIGPTGTGKTLLAKTLA 183

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           +      + V     D   + AI Q     +   +             +A +   +A   
Sbjct: 184 RY-----VNVPFVIAD---ATAITQAGYSGEDVESVIYK-------LLVAADFNIKAAEH 228

Query: 193 KVDVLIIDTAGRLHNNSI 210
              ++ ID   +L   + 
Sbjct: 229 G--IVYIDEVDKLTKKAD 244


>gi|254784612|ref|YP_003072040.1| ATPase, PulE/Tfp pilus assembly [Teredinibacter turnerae T7901]
 gi|237684785|gb|ACR12049.1| ATPase, PulE/Tfp pilus assembly [Teredinibacter turnerae T7901]
          Length = 592

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 106 DFSHRPHVILVV-GVNGVGKTTVI 128
             + +PH IL+V G  G GKTT +
Sbjct: 334 SMTGKPHGILLVTGPTGSGKTTTL 357


>gi|219887705|gb|ACL54227.1| unknown [Zea mays]
          Length = 270

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           +N      P VI V    G GKTT++  L      AG      + D F   A +Q
Sbjct: 7   YNDGDDIPPLVIGVSAPQGSGKTTLVFALDYLFRVAGRNSATLSIDDFYLTAKEQ 61


>gi|226491003|ref|NP_001141904.1| hypothetical protein LOC100274052 [Zea mays]
 gi|194706388|gb|ACF87278.1| unknown [Zea mays]
 gi|195656867|gb|ACG47901.1| protein Kinase C630.09c [Zea mays]
 gi|224029831|gb|ACN33991.1| unknown [Zea mays]
          Length = 429

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           +N      P VI V    G GKTT++  L      AG      + D F   A +Q
Sbjct: 166 YNDGDDIPPLVIGVSAPQGSGKTTLVFALDYLFRVAGRNSATLSIDDFYLTAKEQ 220


>gi|193795944|gb|ACF22024.1| NBS-coding resistance gene protein [Nicotiana tabacum]
          Length = 274

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG-- 129
           T+R +  V  +  ++     I+ ++  L    +     +  VI ++G+ GVGKTT+    
Sbjct: 20  TRRLSTSVVDESDIFGRQNEINILVDRLLS--DDAKEKKLTVIPIIGMAGVGKTTLAKVV 77

Query: 130 ----KLSKKMSDAGLKVMLAAGDTFRSA 153
               K+ +         +    D FR  
Sbjct: 78  YNDEKVKQHFKLKSWICVSEPYDVFRIT 105


>gi|254184511|ref|ZP_04891100.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei 1655]
 gi|184215103|gb|EDU12084.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei 1655]
          Length = 888

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ E L  +   +       +  ++E I      L  P       +PH V L+ G +G
Sbjct: 578 VLKLAETLTERVVGQ----PHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 627

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L++ +       +      F+ A           T +    +  G     
Sbjct: 628 VGKTETALA-LAETLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 676

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +  + +   V+++D   + H +             +   +       ++V+ + 
Sbjct: 677 QGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLT 736

Query: 238 DATTGQNALR 247
                +  ++
Sbjct: 737 SNVGSERVMQ 746


>gi|146275526|ref|YP_001165687.1| cobyrinic acid a,c-diamide synthase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|145322217|gb|ABP64161.1| Cobyrinic acid a,c-diamide synthase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 401

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           + +G   A  I E     R  +    +    +    E + +M          + +  P V
Sbjct: 57  ALVG-RTASAIREAERDGRLPQRDRTASGHRVQYTLEELDQMRAVFGTRPWREPTDTPAV 115

Query: 114 ILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           I V     GVGK+TV   L++  +  G +V+    D+ 
Sbjct: 116 ISVSNFKGGVGKSTVALHLAQHFAIHGYRVLFIDCDSQ 153


>gi|10956858|ref|NP_049078.1| RepA replication protein [Novosphingobium aromaticivorans]
 gi|3378291|gb|AAD03874.1| RepA replication protein [Novosphingobium aromaticivorans]
          Length = 420

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 56  SDIGVAVAQKIVEELLTKRYAKD--VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           + +G   A  I E     R  +    +    +    E + +M          + +  P V
Sbjct: 76  ALVG-RTASAIREAERDGRLPQRDRTASGHRVQYTLEELDQMRAVFGTRPWREPTDTPAV 134

Query: 114 ILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           I V     GVGK+TV   L++  +  G +V+    D+ 
Sbjct: 135 ISVSNFKGGVGKSTVALHLAQHFAIHGYRVLFIDCDSQ 172


>gi|27467055|ref|NP_763692.1| capsular polysaccharide synthesis enzyme Cap5B [Staphylococcus
           epidermidis ATCC 12228]
 gi|27314597|gb|AAO03734.1|AE016744_137 capsular polysaccharide synthesis enzyme Cap5B [Staphylococcus
           epidermidis ATCC 12228]
          Length = 581

 Score = 36.8 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + I +     +K  +   + +   +  +G  GVGKTTV  +L+  +S+ G +V+LA  D
Sbjct: 316 DFIVEDHPQFNKLIDEIENSKVQYLFTMGKGGVGKTTVATQLATVLSNKGYRVLLATTD 374


>gi|326510597|dbj|BAJ87515.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVN 120
           A+++ +++  ++  K     +   D  + + +++  L  P  F       P  IL+ G  
Sbjct: 306 AKELNKDVTPEKNVKTFKDVKGCDDAKKELEEVVEYLRNPTKFTRLGGKLPKGILLTGAP 365

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKT     L+K ++             +R+ +  +          +           +
Sbjct: 366 GTGKT----LLAKAIAGEAGVPF-----FYRAGSEFE----------EMFVGVGARRLRS 406

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           L   A K+A      +  ID  G              + ++L  +D    +  + V+ AT
Sbjct: 407 LFQAAKKKAPCIVF-IDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIIVMAAT 464

Query: 241 TGQNALR 247
              + L 
Sbjct: 465 NLPDILD 471


>gi|322382459|ref|ZP_08056354.1| hypothetical protein PL1_2398 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153572|gb|EFX45961.1| hypothetical protein PL1_2398 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 775

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            E+  KML+   K          +++++VG  G GK+T+I KL+           L   D
Sbjct: 496 REVTRKMLVAAVKRLYEPGCKFDYMLVLVGAQGAGKSTIIQKLA----MRWFSDSLKTFD 551

Query: 149 TFRSAAIDQ 157
           T  +    Q
Sbjct: 552 TKEAGEHLQ 560


>gi|300789762|ref|YP_003770053.1| multidrug ABC transporter ATPase/permease [Amycolatopsis mediterranei
            U32]
 gi|299799276|gb|ADJ49651.1| fused ATPase and permease components of ABC-type multidrug transport
            system [Amycolatopsis mediterranei U32]
          Length = 1248

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 13/94 (13%)

Query: 59   GVAVAQKIVE---ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
             V  A+K VE    L  +   K+V                  P    F+ D +     I 
Sbjct: 994  SVPAAEKAVEVPARLRGEVSFKEVEFSY---------TGAGTPALAEFSLDVAAGET-IA 1043

Query: 116  VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            +VG  G GK+T +  +++     G +V +   D 
Sbjct: 1044 LVGATGAGKSTAVKLVARYYDVTGGEVRIDGTDV 1077


>gi|281423108|ref|ZP_06254021.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Prevotella
           oris F0302]
 gi|281402444|gb|EFB33275.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Prevotella
           oris F0302]
          Length = 845

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 56  SDI-----GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN--WDFS 108
           +D+     GV V Q+I E    +       ++  +      I KM+  + +      D +
Sbjct: 509 ADVVSMMAGVPV-QRIAEAENVRLRNMGTVLKEQVIAQDNAIEKMVKAIQRNRVGIKDPN 567

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKM 135
           H   V + +G  GVGKT +  KL++ M
Sbjct: 568 HPIGVFMFLGPTGVGKTYLAKKLAEYM 594


>gi|256831490|ref|YP_003160217.1| ATP-dependent helicase HrpA [Jonesia denitrificans DSM 20603]
 gi|256685021|gb|ACV07914.1| ATP-dependent helicase HrpA [Jonesia denitrificans DSM 20603]
          Length = 1435

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 17/107 (15%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS----- 166
            VI+V G  G GKTT I K++ ++   G    +      R AA    +  AD        
Sbjct: 74  QVIIVAGETGSGKTTQIPKIALEL-GRGRAGQIGHTQPRRIAARSVAERIADELGTQIGK 132

Query: 167 -----ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTA 202
                  F           +  +    AQ ++       D LIID A
Sbjct: 133 IVGYQVRFTDESSEDTLVKVMTDGILLAQIQRDPQLLAYDTLIIDEA 179


>gi|242043216|ref|XP_002459479.1| hypothetical protein SORBIDRAFT_02g005320 [Sorghum bicolor]
 gi|241922856|gb|EER96000.1| hypothetical protein SORBIDRAFT_02g005320 [Sorghum bicolor]
          Length = 1032

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 78  DVSVQRVLYDVSELIHKM----LMPLSKPFNWDFSHRPH--VILVVGVNGVGKTTVIGKL 131
            ++ + ++    +L+H +    +    K      +   H  VI +VG  GVGKTT+  KL
Sbjct: 167 GIAAEHLMASRRQLVHTLNPIGVEEDMKKLRPWLTKESHRAVISIVGFGGVGKTTIATKL 226


>gi|226227514|ref|YP_002761620.1| methylmalonyl-CoA mutase family protein [Gemmatimonas aurantiaca
           T-27]
 gi|226090705|dbj|BAH39150.1| methylmalonyl-CoA mutase family protein [Gemmatimonas aurantiaca
           T-27]
          Length = 1132

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 72/199 (36%), Gaps = 26/199 (13%)

Query: 49  LEDLLIRSDI--GVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNW 105
           + DLL R D   G  V Q  VE    K   +D  S+ R++        + L    +    
Sbjct: 150 INDLLRRCDFPTGRDVTQDDVE----KAAGRDARSIGRLISAAENFRDEHLGLFDQIRAD 205

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMS---------------DAGLKVMLAAGDTF 150
             + R  V+ + G  G GK++++ +L ++                           GD  
Sbjct: 206 AATRRTPVLGITGTGGAGKSSLVDELVRRYLLDFSDKTIGIISVDPSKRKTGGALLGDRI 265

Query: 151 RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
           R  AI+  +++    +      +     ++   +A    +    D++I++TAG   +++ 
Sbjct: 266 RMNAINNPRVYMRSLA----TRQANLALSSYVQDAVAVLKMAGFDLIILETAGIGQSDTA 321

Query: 211 LMAGIGKMIRVLKRLDPHA 229
           +       + V+      A
Sbjct: 322 ITNHSDVALYVMTPEYGAA 340


>gi|222529827|ref|YP_002573709.1| adenylate/guanylate cyclase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456674|gb|ACM60936.1| adenylate/guanylate cyclase [Caldicellulosiruptor bescii DSM 6725]
          Length = 1153

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           LSK FN   S   + +L++G NG+GKT+++ KL+  +    +K      
Sbjct: 260 LSKLFNIIASKDTNSVLLLGPNGIGKTSLLEKLTNHLVANNIKTYYIRC 308


>gi|155371626|ref|YP_001427160.1| hypothetical protein ATCV1_Z679L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124946|gb|ABT16813.1| hypothetical protein ATCV1_Z679L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 993

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 19/116 (16%)

Query: 114 ILVVGVNGVGKTTVIGKL---SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           I V+G NG GKTT+I  L   ++    +  K         R A + Q          D  
Sbjct: 666 IGVIGPNGAGKTTLIKVLTGEAQPTRGSVWKHPNM-----RMAYVAQHAFHHIENHLDMT 720

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            ++             +   A   D+  +D A R   ++  M  I  +  V KRLD
Sbjct: 721 PNQY-----------IQWRYASGQDLESVDRAERSAVDTEKMYEIKVVDGVKKRLD 765


>gi|126642712|ref|YP_001085696.1| cell division protein [Acinetobacter baumannii ATCC 17978]
 gi|184159244|ref|YP_001847583.1| ATP-dependent Zn protease [Acinetobacter baumannii ACICU]
 gi|213157619|ref|YP_002320417.1| cell division protein FtsH [Acinetobacter baumannii AB0057]
 gi|215482521|ref|YP_002324709.1| Cell division protease ftsH [Acinetobacter baumannii AB307-0294]
 gi|301346064|ref|ZP_07226805.1| cell division protein [Acinetobacter baumannii AB056]
 gi|301511492|ref|ZP_07236729.1| cell division protein [Acinetobacter baumannii AB058]
 gi|301595415|ref|ZP_07240423.1| cell division protein [Acinetobacter baumannii AB059]
 gi|183210838|gb|ACC58236.1| ATP-dependent Zn protease [Acinetobacter baumannii ACICU]
 gi|213056779|gb|ACJ41681.1| cell division protein FtsH [Acinetobacter baumannii AB0057]
 gi|213988125|gb|ACJ58424.1| Cell division protease ftsH [Acinetobacter baumannii AB307-0294]
 gi|322509158|gb|ADX04612.1| ftsH [Acinetobacter baumannii 1656-2]
 gi|323519186|gb|ADX93567.1| cell division protein [Acinetobacter baumannii TCDC-AB0715]
          Length = 598

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 25/168 (14%)

Query: 87  DVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  + + +++  L  P  +    +  P  +L+VG  G GKT     L+K ++        
Sbjct: 131 EAKQEVVEIVDFLKDPAKFKRLGATIPRGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 186

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
           +   +                  +       S    +  +A + A      +  ID  GR
Sbjct: 187 SISGS---------------DFVEMFVGVGASRVRDMFEQAKRHAPCIIF-IDEIDAVGR 230

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                           + ++L  +D    +  + V+ AT   + L + 
Sbjct: 231 HRGSGTGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRVDVLDKA 278


>gi|47220632|emb|CAG06554.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 609

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 65/206 (31%), Gaps = 35/206 (16%)

Query: 64  QKIVEELLTKRYAKD-VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +++ +++  +    D V+  R +      + ++L    K             +  G  G 
Sbjct: 339 KQLRDDVYGELVNTDQVAGVRWVRFP--ELTRILKGHRKGELT---------VFTGPTGS 387

Query: 123 GKTTVIGKLSKKMSDAGLKVML--AAGDTFRSA-------AIDQLKIWADRTSADFVCSE 173
           GKTT I +++  +   G+  +      +  R A       A+ +L+   ++        E
Sbjct: 388 GKTTFISEVALDLCMQGVNTLWGSFEINNVRLAKIMLTQFAVQRLEENLEQYDFWADKFE 447

Query: 174 I---------GSDAAALAYEAFKQA-QAKKVDVLIIDTAGRLHNNSILMAG----IGKMI 219
                     G        +  + A     ++ +IID    +     L          +I
Sbjct: 448 ELPLYFMTFHGQQNIKTVLDTMQHAVYMYDINHVIIDNLQFMMGQENLSVDKFAVQDHII 507

Query: 220 RVLKRLDPHAPHSVLQVLDATTGQNA 245
              ++    +   V  ++     ++ 
Sbjct: 508 GAFRKFATSSSCHVTLIIHPRKEEDD 533


>gi|57504882|ref|ZP_00370857.1| ATP-binding protein (mpr) [Campylobacter coli RM2228]
 gi|305432411|ref|ZP_07401573.1| ATP/GTP-binding protein [Campylobacter coli JV20]
 gi|57019310|gb|EAL56012.1| ATP-binding protein (mpr) [Campylobacter coli RM2228]
 gi|304444450|gb|EFM37101.1| ATP/GTP-binding protein [Campylobacter coli JV20]
          Length = 368

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 106/319 (33%), Gaps = 54/319 (16%)

Query: 14  IRKLTK----GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE 69
           + KL      GF    +     + DI +    ++ V  ELE +   S     V++++ + 
Sbjct: 6   LEKLKSVKYPGFDKDIVSF-NFVKDIKTE---NENVIVELEIV--SS--NPQVSEELRKN 57

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           +  +  A        ++ ++  I +         N     +  +++  G  GVGK+T   
Sbjct: 58  I-DEALASLNLKNLQIHIITPKIPEEKSNSRSGKNIAPQVKNFIMVSSGKGGVGKSTTTV 116

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            L+  M+  G +V +   D +               +   +  E  +    +  +  K  
Sbjct: 117 NLAISMAKMGKRVGILDADIYGP-------------NIPRMLGETKTQP-EVVGQRLKPI 162

Query: 190 QAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQV----LDATTGQN 244
            +     + + + G L      LM     +++ +++L        L V    +   TG  
Sbjct: 163 LSHG---VYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGDA 219

Query: 245 ALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIPIVVTHKIPVY--------FLG-- 290
            +   +     AG    + T     +D + R    + +     IP+         FL   
Sbjct: 220 QITSAQSIPITAGV--CVSTPQTVSLDDSKR---ALDMFNKLHIPIAGVIENMSGFLCPD 274

Query: 291 VGEGINDLEPFVAKDFSAV 309
            G+  +      A+D +  
Sbjct: 275 NGKEYDIFGKGTAEDMAKA 293


>gi|325830838|ref|ZP_08164222.1| ABC transporter, ATP-binding protein [Eggerthella sp. HGA1]
 gi|325487245|gb|EGC89688.1| ABC transporter, ATP-binding protein [Eggerthella sp. HGA1]
          Length = 639

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 13/111 (11%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +H++L  L        +     + +VG +G GKTT    L +        V +   D  R
Sbjct: 406 VHEVLRGLDLAIPAGAT-----VALVGPSGGGKTTTCSLLPRFYDPERGSVEIDGIDI-R 459

Query: 152 SAAIDQLKIWADRTSADFVCSE-------IGSDAAALAYEAFKQAQAKKVD 195
           +  ++ L+        D    +             A   E  + A+   +D
Sbjct: 460 AVTVESLRDAIGIVQQDVYLFDGTIRDNIAYGRPDATTAEIVEAAKRANID 510


>gi|291543033|emb|CBL16143.1| hypothetical protein RBR_20000 [Ruminococcus bromii L2-63]
          Length = 1034

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 8/94 (8%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRS---- 56
            +K+  E +    KL     + S   K+ I ++++   L +   +    E LLI S    
Sbjct: 447 PEKIREERIEKSEKLFSNLRNLSSSQKKLINNLLNEEVLKNNAEIYSSFEKLLISSEKYK 506

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
           D+G  V +++ E L  +   +   +++   +++E
Sbjct: 507 DMGAKV-KELTE-LSDRLNGEIDELKKHNMELNE 538


>gi|225011525|ref|ZP_03701963.1| ATP-dependent metalloprotease FtsH [Flavobacteria bacterium
           MS024-2A]
 gi|225004028|gb|EEG42000.1| ATP-dependent metalloprotease FtsH [Flavobacteria bacterium
           MS024-2A]
          Length = 651

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 25/181 (13%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K   KDV+      +  + I   L   +K +       P   L+VG+ G GKT     L+
Sbjct: 191 KTTFKDVAGLEGAKEEIQEIVDFLKNPNK-YTVLGGKIPKGALLVGLPGTGKT----LLA 245

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           K ++        +   +                  +       S    L  +A  ++ A 
Sbjct: 246 KAVAGEAKVPFYSLSGS---------------DFVEMFVGVGASRVRDLFKQAKDKSPAI 290

Query: 193 KVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
              +  ID  GR    S +          + ++L  +D     + + V+ AT   + L +
Sbjct: 291 IF-IDEIDAIGRARGKSNMTGSNDERENTLNQLLTEMDGFGTDTNVIVIAATNRADVLDK 349

Query: 249 V 249
            
Sbjct: 350 A 350


>gi|198463917|ref|XP_001352996.2| GA18483 [Drosophila pseudoobscura pseudoobscura]
 gi|257096739|sp|Q29DB7|NUBP2_DROPS RecName: Full=Cytosolic Fe-S cluster assembly factor NUBP2 homolog
 gi|198151462|gb|EAL30497.2| GA18483 [Drosophila pseudoobscura pseudoobscura]
          Length = 258

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +  +I++ G  GVGK+TV  +L+  +  +G KV L   D
Sbjct: 6   KNVIIVLSGKGGVGKSTVSTQLALALRHSGHKVGLLDID 44


>gi|253698932|ref|YP_003020121.1| phytochrome sensor protein [Geobacter sp. M21]
 gi|251773782|gb|ACT16363.1| putative phytochrome sensor protein [Geobacter sp. M21]
          Length = 767

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 96  LMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTTVI 128
           L   ++    D   +P+  ILVVG  G GKTT +
Sbjct: 494 LTERNRRVFTDCIKKPYGLILVVGPTGSGKTTTL 527


>gi|188585554|ref|YP_001917099.1| cobyrinic acid a,c-diamide synthase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350241|gb|ACB84511.1| cobyrinic acid a,c-diamide synthase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 482

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 16/159 (10%)

Query: 114 ILVVGVN-GVGKTT-VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I+V G N G GKTT  +  L+  + + G  V                 I           
Sbjct: 9   IVVAGTNSGSGKTTVTMALLAA-LRNQGQSVQGFKVGPDYIDPSFHTTITGRPARNLDTW 67

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH 231
               +    +     ++A    ++ ++    G+   +            + K+LD     
Sbjct: 68  MMSPNIMKEIFQRGSEKADISIIEGVMGLYDGKSGKDDR-----ASTAEIAKKLDA---- 118

Query: 232 SVLQVLDATTGQNALRQVEMFHAVAGTT----GLIMTKM 266
            V+ V++A +   ++  +              G+I+ K+
Sbjct: 119 PVILVVNAKSQARSVAALIYGFQNFDPDVKVAGVILNKV 157


>gi|153835694|ref|ZP_01988361.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           harveyi HY01]
 gi|156973713|ref|YP_001444620.1| ATP-dependent protease ATP-binding subunit [Vibrio harveyi ATCC
           BAA-1116]
 gi|269961044|ref|ZP_06175413.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio harveyi
           1DA3]
 gi|166215218|sp|A7MV82|CLPX_VIBHB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX
 gi|148867675|gb|EDL66951.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Vibrio
           harveyi HY01]
 gi|156525307|gb|ABU70393.1| hypothetical protein VIBHAR_01418 [Vibrio harveyi ATCC BAA-1116]
 gi|269834263|gb|EEZ88353.1| ATP-dependent Clp protease ATP-binding subunit clpX [Vibrio harveyi
           1DA3]
          Length = 426

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   ++I E L      +D + + +   V     ++    +
Sbjct: 46  NDIIREEIKDVLPKKESEALPTPKQIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGDT 105

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 106 TSEGVELGKSN--ILLIGPTGSGKTLLAETLARFL 138


>gi|148239032|ref|YP_001224419.1| ABC-type multidrug transport system ATPase and permease components
           [Synechococcus sp. WH 7803]
 gi|147847571|emb|CAK23122.1| ABC-type multidrug transport system ATPase and permease components
           [Synechococcus sp. WH 7803]
          Length = 609

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P+ +  ++  +   HV  +VG  G GKTTVI  L +       +++L   D  R+ ++ 
Sbjct: 381 EPIIEDLSFRIAPGEHV-ALVGPTGSGKTTVIRLLCRLYEPQQGRILLDGQDI-RTLSLS 438

Query: 157 QLKIWADRTSADFV 170
           +L+        D  
Sbjct: 439 ELRHQLGVVLQDTF 452


>gi|116515167|ref|YP_802796.1| ATP-dependent protease [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116257021|gb|ABJ90703.1| ATP-dependent protease [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 600

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           KI+ +   K    D++      +    + + L    K F       P  IL+VG  G GK
Sbjct: 140 KILSKNKIKITFSDIAGCDEAKEEVSELVEYLKE-PKKFQKLGGKIPKGILMVGPPGTGK 198

Query: 125 TTVIGK 130
           T  + K
Sbjct: 199 TL-LAK 203


>gi|114706004|ref|ZP_01438907.1| ABC transporter, nucleotide binding/ATPase protein [Fulvimarina
           pelagi HTCC2506]
 gi|114538850|gb|EAU41971.1| ABC transporter, nucleotide binding/ATPase protein [Fulvimarina
           pelagi HTCC2506]
          Length = 589

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 104 NWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           +  F+ +P   I  VG +G GKTT+   L +    +G  + +   D  R   +  L+   
Sbjct: 351 DVSFAAKPGETIAFVGPSGAGKTTICALLPRFYDVSGGAIRIDGTDI-REMTLASLRNHV 409

Query: 163 DRTSADFV 170
                D  
Sbjct: 410 GVVQQDVF 417


>gi|88607940|ref|YP_505659.1| ATP-binding Mrp/Nbp35 family protein [Anaplasma phagocytophilum HZ]
 gi|88599003|gb|ABD44473.1| ATP-binding protein, Mrp/Nbp35 family [Anaplasma phagocytophilum
           HZ]
          Length = 342

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 102 PFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           P         +V+LV  G  GVGK+TV  +L+  +S  G K+ L   D +
Sbjct: 88  PKRVKLKGIKNVLLVSSGKGGVGKSTVAAQLALTLSALGYKIALVDADIY 137


>gi|15606509|ref|NP_213889.1| ATP-dependent Clp protease [Aquifex aeolicus VF5]
 gi|2983728|gb|AAC07290.1| ATP-dependent Clp protease [Aquifex aeolicus VF5]
          Length = 810

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 31/142 (21%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAV-- 62
           K+  E L    +L   F +   K KE +    +  ++ D    E+         GV V  
Sbjct: 434 KIRDEEL----RLRAKFETMKAKWKEEMEK--NRPKVTDEDVAEVVARWT----GVPVKR 483

Query: 63  -----AQKIV---EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HV 113
                A+K++   EEL  +   +D      +  V++ I +  + L         HRP  V
Sbjct: 484 VHESDAEKLLHIEEELKKRVVGQD----EAIKAVAKAIRRSRVGL------KGKHRPIGV 533

Query: 114 ILVVGVNGVGKTTVIGKLSKKM 135
            + +G  GVGKT     L++ +
Sbjct: 534 FMFLGPTGVGKTETAKALAEYL 555


>gi|533092|gb|AAA79901.1| ABC transport protein [Homo sapiens]
          Length = 622

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 420 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 472

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 473 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 532

Query: 218 MIRVLKR 224
              V ++
Sbjct: 533 YTDVGEK 539


>gi|54307809|ref|YP_128829.1| putative cell division protein FtsH [Photobacterium profundum SS9]
 gi|81400133|sp|Q6LUJ8|FTSH_PHOPR RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|46912232|emb|CAG19027.1| putative cell division protein FtsH [Photobacterium profundum SS9]
          Length = 696

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  IL+VG  G GKT     L+K ++     
Sbjct: 185 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGILLVGPPGTGKT----LLAKAIAGEAKV 238

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 239 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 282

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 283 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLD 331


>gi|27904833|ref|NP_777959.1| cell division protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|31340080|sp|Q89AF2|FTSH_BUCBP RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|27904231|gb|AAO27064.1| Cell division protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 610

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           DV+      +  + + + L   S+ F       P  IL+VG  G GKT  + K
Sbjct: 153 DVAGCDEAKEEVQELVEYLKEPSR-FQKLGGKIPKGILMVGPPGTGKTL-LAK 203


>gi|154247402|ref|YP_001418360.1| putative ABC transporter ATP-binding protein [Xanthobacter
           autotrophicus Py2]
 gi|154161487|gb|ABS68703.1| ABC transporter related [Xanthobacter autotrophicus Py2]
          Length = 551

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMP---LSKPF-------NWDFSHRPHVIL-V 116
           +EL+ K   +  S   ++  V+E + + ++    LSK F       +  F   P  I+ V
Sbjct: 291 DELVAKASERQPSATEIVIPVAERLGQNVIAFDHLSKSFGDKMLIDDLSFKLPPGGIVGV 350

Query: 117 VGVNGVGKTT 126
           +G NG GKTT
Sbjct: 351 IGPNGAGKTT 360


>gi|95930736|ref|ZP_01313469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133216|gb|EAT14882.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
           acetoxidans DSM 684]
          Length = 508

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 10/182 (5%)

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV-GKTTVIGKLS 132
               +  V      V  ++      +++     + +    +L+VGV G  GKTT+   L 
Sbjct: 62  AVVVEQPVDLPDEIVQVVVDDSRYAMARCAACFYDYPAQGMLIVGVTGTNGKTTMTYLLE 121

Query: 133 KKMSDAGLKVMLAAGDTFRSA--AIDQLKIWADRTSA-----DFVCSEIGSDAAALAYEA 185
             +  AG    +    + R    A++      +         +F      +    ++  A
Sbjct: 122 SVLKQAGYTPAVVGTISNRMGDDAVEAEHTTPESLDLQRILAEFKSQGADALVIEVSSHA 181

Query: 186 FKQAQAKK--VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
             Q++      DV +       H +           +     +P        V++     
Sbjct: 182 LMQSRVVGLTFDVAVFTNLTPEHLDYHKNMESYFAAKTRLFKEPQIYGDFTAVVNTDDPY 241

Query: 244 NA 245
            A
Sbjct: 242 GA 243


>gi|332823715|ref|XP_003311251.1| PREDICTED: LOW QUALITY PROTEIN: antigen peptide transporter 2 [Pan
           troglodytes]
          Length = 686

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 467 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 519

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 520 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 579

Query: 218 MIRVLKR 224
              V ++
Sbjct: 580 YTDVGEK 586


>gi|323701892|ref|ZP_08113562.1| tRNA 2-selenouridine synthase [Desulfotomaculum nigrificans DSM
           574]
 gi|323533196|gb|EGB23065.1| tRNA 2-selenouridine synthase [Desulfotomaculum nigrificans DSM
           574]
          Length = 375

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 20/112 (17%)

Query: 105 WDFSHRPHV-ILVVGVNGVGKTTVIGKLSKK----MSDAGLKVMLAAG------------ 147
            D    PH  I++ G+ GVGKTT++ KL+ +    +   GL     +             
Sbjct: 132 LDRQIIPHKSIVLHGLTGVGKTTILKKLAVQGYPVLDLEGLARHRGSAFGKIGLPPSPSQ 191

Query: 148 -DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
            D    AAI Q+   A       V  E       +   A   +  +   VL+
Sbjct: 192 KDF--EAAIVQILTSAAPQGMIIVECESRRVGKLIVPPAVFNSMTEGYRVLL 241


>gi|315186640|gb|EFU20399.1| ABC transporter related protein [Spirochaeta thermophila DSM 6578]
          Length = 303

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 104 NWDFSHRPHVIL-VVGVNGVGKTTVI 128
           + D +  P VI   VG+NG GKTT I
Sbjct: 22  DLDLTLEPGVIYGFVGLNGAGKTTTI 47


>gi|302768875|ref|XP_002967857.1| hypothetical protein SELMODRAFT_169256 [Selaginella moellendorffii]
 gi|300164595|gb|EFJ31204.1| hypothetical protein SELMODRAFT_169256 [Selaginella moellendorffii]
          Length = 828

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 62/196 (31%), Gaps = 23/196 (11%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           ++G A   KI +    K    DV+       +V E +H +  P  K +    +  P   L
Sbjct: 317 NVGKAHVTKINKNAKDKVTFNDVAGCDEAKEEVMEFVHFLKNP--KKYEELGAKIPKGAL 374

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VG  G GKT     L+K  +                A++  L I        FV     
Sbjct: 375 LVGPPGTGKT----LLAKATAGE--------------ASVPFLSISGSDFMEMFVGVGPS 416

Query: 176 SDAAALAYEAFKQAQAKKVDVLIID--TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                 A           +D +       GR             + ++L  +D  A  + 
Sbjct: 417 RVRDLFAQARQCAPSIIFIDEIDAIGRARGRGGFAGANDERESTLNQLLVEMDGFATTAG 476

Query: 234 LQVLDATTGQNALRQV 249
           + VL  T   + L + 
Sbjct: 477 VVVLAGTNRPDILDKA 492


>gi|294141349|ref|YP_003557327.1| ATP-binding protein, Mrp/Nbp35 family [Shewanella violacea DSS12]
 gi|293327818|dbj|BAJ02549.1| ATP-binding protein, Mrp/Nbp35 family [Shewanella violacea DSS12]
          Length = 316

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 74  RYAKDVSVQRVLYDVSELIHKMLMPLSK-PFNWDFSHRPHVILVV-GVNGVGKTTVIGKL 131
              K +++   + +V   I   L  +S  P      +   VI +  G  GVGK+T    L
Sbjct: 70  ALTKQLTLLDAIDEVECEIDFKLAQISAIPSVEPLPNVKQVIAIASGKGGVGKSTTAVNL 129

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK-QAQ 190
           +  ++  G +V +   D +  +                   E        A +A    AQ
Sbjct: 130 ALALAGEGAQVGILDADIYGPS-------IPLMLGVSEFKPESPDGKMMTAAKAHGIAAQ 182

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH--APHSVLQVLDATTGQNALRQ 248
           +             L      +     +   L +L      P     ++D   G   ++ 
Sbjct: 183 SIGF---------MLGQEEAAVWRGPMVAGALTQLINETLWPELDYLIIDMPPGTGDIQ- 232

Query: 249 VEMFHAVAGTTGLIM--TKMD---GTARGGGLIPIVVTHKIPVY 287
                     TG I+  T  D     A+ G  I +     IPV 
Sbjct: 233 -LTLSQKVPVTGAIIVTTPQDIALADAKKG--INMFQKVNIPVL 273


>gi|284051382|ref|ZP_06381592.1| FtsH peptidase [Arthrospira platensis str. Paraca]
          Length = 634

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 25/170 (14%)

Query: 85  LYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +  E + +++  L KP  F    +  P  +L+VG  G GKT     L+K ++      
Sbjct: 179 VEEAKEELQEVVTFLKKPERFTAVGARIPKGVLLVGPPGTGKT----LLAKAIAGEAGVP 234

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
             +   +                  +       S    L  +A + A      +  ID  
Sbjct: 235 FFSISGS---------------EFVEMFVGVGASRVRDLFKKAKETAPCIVF-IDEIDAV 278

Query: 203 GRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
           GR                + ++L  +D    +  + V+ AT   + L   
Sbjct: 279 GRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNPGIIVIAATNRPDVLDAA 328


>gi|1399905|gb|AAB41964.1| TAP1-g7 [Mus musculus]
 gi|1399911|gb|AAB41967.1| TAP1-cas [Mus musculus castaneus]
          Length = 724

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           H   V  +VG NG GK+TV   L       G +++L   D  R   + Q       T   
Sbjct: 505 HPGTVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL---DGQR---LVQYDHHYLHTQVA 558

Query: 169 FVCSEI 174
            V  E 
Sbjct: 559 AVGQEP 564


>gi|1399909|gb|AAB41966.1| TAP1-k [Mus musculus]
          Length = 724

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           H   V  +VG NG GK+TV   L       G +++L   D  R   + Q       T   
Sbjct: 505 HPGTVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL---DGQR---LVQYDHHYLHTQVA 558

Query: 169 FVCSEI 174
            V  E 
Sbjct: 559 AVGQEP 564


>gi|199305|gb|AAA39570.1| HAM1 [Mus musculus]
 gi|15489424|gb|AAH13802.1| Tap1 protein [Mus musculus]
 gi|19352972|gb|AAH24897.1| Tap1 protein [Mus musculus]
          Length = 577

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           H   V  +VG NG GK+TV   L       G +++L   D  R   + Q       T   
Sbjct: 358 HPGTVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL---DGQR---LVQYDHHYLHTQVA 411

Query: 169 FVCSEI 174
            V  E 
Sbjct: 412 AVGQEP 417


>gi|1399907|gb|AAB41965.1| TAP1-f [Mus musculus]
          Length = 724

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           H   V  +VG NG GK+TV   L       G +++L   D  R   + Q       T   
Sbjct: 505 HPGTVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL---DGQR---LVQYDHHYLHTQVA 558

Query: 169 FVCSEI 174
            V  E 
Sbjct: 559 AVGQEP 564


>gi|85057502|ref|YP_456418.1| thymidylate kinase [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789607|gb|ABC65339.1| thymidylate kinase [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 210

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
            +I+  G++G GKTT+I K+ K++   G +V+   G
Sbjct: 2   KIIVFEGLDGSGKTTLIQKIRKQLEKQGHEVINLQG 37


>gi|83816450|ref|YP_446901.1| ABC transporter, ATP-binding protein [Salinibacter ruber DSM 13855]
 gi|83757844|gb|ABC45957.1| ABC transporter, ATP-binding protein [Salinibacter ruber DSM 13855]
          Length = 669

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            PL +  +W  +  PH + +VG NG GKTT           AG + + +   T    +I 
Sbjct: 14  DPLFQNLSWTITPEPHRVGLVGPNGAGKTT------LLKVIAGDQRVDSGTITREGVSIG 67

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
            L+        D    E    A        +Q Q    ++  ID     H +      + 
Sbjct: 68  YLEQDVQELPEDRTVREEALRAFEEVLALEEQEQEISRELEAID-----HESDRHEKLLN 122

Query: 217 KMIRVLKRLDPHAPHSV 233
           ++ RV +RLD    H +
Sbjct: 123 RLHRVQERLDAQDAHRI 139


>gi|51205|emb|CAA42178.1| HAM-1 [Mus musculus]
          Length = 577

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           H   V  +VG NG GK+TV   L       G +++L   D  R   + Q       T   
Sbjct: 358 HPGTVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL---DGQR---LVQYDHHYLHTQVA 411

Query: 169 FVCSEI 174
            V  E 
Sbjct: 412 AVGQEP 417


>gi|2506116|sp|P21958|TAP1_MOUSE RecName: Full=Antigen peptide transporter 1; Short=APT1; AltName:
           Full=ATP-binding cassette sub-family B member 2;
           AltName: Full=Histocompatibility antigen modifier 1;
           AltName: Full=Peptide transporter TAP1
 gi|1399901|gb|AAB41962.1| TAP1-d [Mus musculus]
 gi|74150383|dbj|BAE32237.1| unnamed protein product [Mus musculus]
          Length = 724

 Score = 36.8 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
           H   V  +VG NG GK+TV   L       G +++L   D  R   + Q       T   
Sbjct: 505 HPGTVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL---DGQR---LVQYDHHYLHTQVA 558

Query: 169 FVCSEI 174
            V  E 
Sbjct: 559 AVGQEP 564


>gi|309355482|emb|CAP38852.2| hypothetical protein CBG_22213 [Caenorhabditis briggsae AF16]
          Length = 555

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 33  TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELI 92
            +      ++      ++D+L          + I E+          +    + +  ELI
Sbjct: 233 KEFFKKENINVIFWSAMDDVL----------ETITEDGEESAVPSTSTSDMFVTNKDELI 282

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
            K         + + S +P ++ +VG   VGK++ I KL+
Sbjct: 283 AKF--KELGHVSDEPSAKPVMVGMVGYPNVGKSSTINKLA 320


>gi|297661227|ref|XP_002809167.1| PREDICTED: antigen peptide transporter 2-like isoform 1 [Pongo
           abelii]
 gi|297661229|ref|XP_002809168.1| PREDICTED: antigen peptide transporter 2-like isoform 2 [Pongo
           abelii]
          Length = 703

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|253573764|ref|ZP_04851107.1| ABC transporter, ATP-binding protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847292|gb|EES75297.1| ABC transporter, ATP-binding protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 518

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 64  QKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            +I+E    K   +       +  +++++  +L+     PLSKP N     R   I +VG
Sbjct: 299 MEIIELAKEKPKPQFNFKDARTSGKLIFETKDLVIGYDSPLSKPLNLRME-RGQKIALVG 357

Query: 119 VNGVGKTT 126
            NG+GKTT
Sbjct: 358 ANGIGKTT 365


>gi|294893402|ref|XP_002774454.1| Nod factor export ATP-binding protein I, putative [Perkinsus
           marinus ATCC 50983]
 gi|239879847|gb|EER06270.1| Nod factor export ATP-binding protein I, putative [Perkinsus
           marinus ATCC 50983]
          Length = 374

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 68  EELLTKRYAKDVSVQRV-LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           E+L  +    D  V+ + + +++++  K      +  +   +    V+L+ G NG GKTT
Sbjct: 25  EDLREEALRADTIVEGISVRNLTKIYPKQKKAAVESLDIGVAPAEIVVLL-GPNGAGKTT 83

Query: 127 V 127
            
Sbjct: 84  T 84


>gi|256823529|ref|YP_003147492.1| general secretory pathway protein E [Kangiella koreensis DSM 16069]
 gi|256797068|gb|ACV27724.1| general secretory pathway protein E [Kangiella koreensis DSM 16069]
          Length = 511

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 96  LMPLSKPFNWDFSHRPH-VILVVGVNGVGKTTVI 128
           + P +     D  H+PH +ILV G  G GKTT +
Sbjct: 249 MEPKTMELMGDLLHKPHGIILVTGPTGSGKTTTL 282


>gi|254480031|ref|ZP_05093279.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine
           gamma proteobacterium HTCC2148]
 gi|214039593|gb|EEB80252.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine
           gamma proteobacterium HTCC2148]
          Length = 488

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 64  QKIVEELLTK---RYAKDVSVQRVLYDVSELIHKM--LMPLSKPFNWDFSHRPHVIL-VV 117
           ++ +E+ +         +  V   +  +   + +M  L   S      F   P V L ++
Sbjct: 49  RQFIEQAVASGAVAIVAEPPVAGFVEALQVPLVEMPELQQESGFIASRFHKEPSVSLHMI 108

Query: 118 GVNGV-GKTTVIGKLSKKMSDAGLKVMLAAG 147
           GV G  GKTT    +++ +   G    +   
Sbjct: 109 GVTGTNGKTTTSRLVAQLIRLQGKSCGVIGT 139


>gi|182412093|ref|YP_001817159.1| putative ABC transporter ATP-binding protein [Opitutus terrae
           PB90-1]
 gi|177839307|gb|ACB73559.1| ABC transporter related [Opitutus terrae PB90-1]
          Length = 561

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 8/127 (6%)

Query: 66  IVEELLTKRYAKDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL-VVGV 119
           + E +  K    ++ +        L   ++ + K         N +F+  P  I+ V+G 
Sbjct: 303 LKENVAEKEREFEILIPPGPRLGNLVVEAQKLTKSYGENVLFENVNFALPPGGIVGVIGP 362

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           NG GKTT+   ++   ++      L  GDT + A +DQ +      +  +     G +  
Sbjct: 363 NGAGKTTMFKLITG--AEQPDGGTLRVGDTVKIAHVDQSRESLPDKATIWEAISGGEEIL 420

Query: 180 ALAYEAF 186
            LA    
Sbjct: 421 KLANREV 427


>gi|154344961|ref|XP_001568422.1| replication factor C, subunit 3 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134065759|emb|CAM43533.1| putative replication factor C, subunit 3 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 364

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 50/162 (30%), Gaps = 26/162 (16%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA---------AGDTFRSAAIDQLKIW 161
           PH +L+ G  G GKTT I   +  +                     D  R     Q + +
Sbjct: 51  PH-LLLYGPPGTGKTTTIKACAYYLYGKDRVRANVLEMNASDDRGIDVVR----QQTREF 105

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
           A  TS   V     S  +     A K        ++I+D A ++ +++        + RV
Sbjct: 106 ASTTSIFSVMGSSSSTGSGSGGSAVK------FKLVILDEADQMSHDA-----QAALRRV 154

Query: 222 LKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           +++         L          AL+        A      M
Sbjct: 155 IEK-YTRNVRFCLLCNHINKIIPALQSRCTRFRFAPVKKSAM 195


>gi|113956652|ref|YP_729222.1| cell division control protein 6 [Thermoplasma acidophilum]
 gi|113927851|dbj|BAF30816.1| Cell Division Control protein 6 homologue [Thermoplasma
           acidophilum]
          Length = 361

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 61  AVAQKIVEELLTKRYAK------DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
            + +K +E L             D++ Q     + + I+ +L  L +   +     P  I
Sbjct: 10  ELTRKTIETLKDNGNNLKDPSVFDLNYQPKKIFIRKEINAILEQLGQ---YALWKIPKHI 66

Query: 115 LVVGVNGVGKTTVIGKLSKKMSD-AGLKVMLAAG 147
            ++G  G GKT  I  +++ +    GL+ +    
Sbjct: 67  ALIGPKGAGKTITIKTIAESLQRTQGLENIYINA 100


>gi|119717765|ref|YP_924730.1| LAO/AO transport system ATPase [Nocardioides sp. JS614]
 gi|119538426|gb|ABL83043.1| LAO/AO transport system ATPase [Nocardioides sp. JS614]
          Length = 328

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 28/170 (16%)

Query: 57  DIGVAVAQKIVEELLTKRYAK--------DVSVQRVLYDVSELIHKMLMPLSKPFNWDFS 108
           D+   + + +VE +   R A         + +  +      EL+ ++            S
Sbjct: 3   DV-PGLVEGLVEGIREGRRAAVSRAITLVESTRPQHRAQARELLTELAREGRDAVRVGIS 61

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAI-----DQLKIW 161
                    GV GVGK+T I  L  +++ AG +V + A D  + R+         ++   
Sbjct: 62  ---------GVPGVGKSTFIEALGIRLTAAGHRVGVLAVDPSSVRTGGSVLGDKTRMARL 112

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQA---QAKKVDVLIIDTAGRLHNN 208
           A    A    S        +A    +     +    DV++++T G   + 
Sbjct: 113 AQDQRAFIRPSPSAGTLGGVARATVQAMGVLEGAGYDVVLVETVGVGQSE 162


>gi|332530135|ref|ZP_08406084.1| type IV pilus assembly protein PilB [Hylemonella gracilis ATCC
           19624]
 gi|332040405|gb|EGI76782.1| type IV pilus assembly protein PilB [Hylemonella gracilis ATCC
           19624]
          Length = 571

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 109 HRPHVILVV-GVNGVGKTTVI-GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
            RPH +L+V G  G GKTT +   L++  S     V +      R   + Q++   
Sbjct: 321 QRPHGVLLVTGPTGSGKTTTLYAALARLHSPEVNIVTVEDPVELRIDGVTQIQTHG 376


>gi|325293897|ref|YP_004279761.1| chromosome partitioning protein [Agrobacterium sp. H13-3]
 gi|325061750|gb|ADY65441.1| chromosome partitioning protein [Agrobacterium sp. H13-3]
          Length = 233

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT +  L+ +++  G +V +   D  R      +  W ++  A    S I    AA
Sbjct: 12  GAGKTTAVLLLASELARRGSRVCVIDTDPQR-----WISRWREKADARVDFSVITYVTAA 66

Query: 181 LAYEAFKQAQAKKVDVLIIDTAG 203
              +    ++    D +IID  G
Sbjct: 67  TLQQHVIDSRRA-FDHVIIDLPG 88


>gi|295401294|ref|ZP_06811266.1| ATPase AAA-2 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294976701|gb|EFG52307.1| ATPase AAA-2 domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 720

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 87/228 (38%), Gaps = 41/228 (17%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG-- 59
           +++K   E L+ I K       T    +E     ++++  D+ ++  LE  L ++ +   
Sbjct: 336 TDEKQIQERLAQIAK-----EKTKAVNEENFE--LAAKLRDEELK--LEKQL-QNGVNQE 385

Query: 60  ---VAVA--QKIVEEL------------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
              V VA  Q+I+EE               K    + ++ + +    E + K+   + + 
Sbjct: 386 RPVVDVADIQRIIEEKTGIPVGKLQADEKEKMKHLEENLAKKVIGQEEAVKKVAKAIRRS 445

Query: 103 -FNWDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                  HRP    L VG  GVGKT +   L++++   G K  +   D          + 
Sbjct: 446 RAGLKAKHRPIGSFLFVGPTGVGKTELAKTLAEEL--FGSKDAMIRLDMS--------EY 495

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
               + +  + S  G      A +  ++ +     ++++D   + H +
Sbjct: 496 MEKHSVSKLIGSPPGYVGFEEAGQLTEKVRRNPYSIILLDEIEKAHPD 543


>gi|317052515|ref|YP_004113631.1| LAO/AO transporter ATPase [Desulfurispirillum indicum S5]
 gi|316947599|gb|ADU67075.1| LAO/AO transport system ATPase [Desulfurispirillum indicum S5]
          Length = 324

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 77/226 (34%), Gaps = 44/226 (19%)

Query: 64  QKIVEEL---LTKRYAKDVSVQRVLYDVSE-----LIHKMLMPLSKPFNWDFSHRPHVIL 115
           Q+I+E +     +  AK +++        +     ++ ++L    +      S       
Sbjct: 4   QQIIEGIHQGKLRALAKAITLIESQRPEDQQRAAAILEELLPRTGRSLRIGIS------- 56

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS-------AAIDQLKIWADRTSAD 168
             GV G GK+T I      +   G KV + A D               ++++ +  T+A 
Sbjct: 57  --GVPGAGKSTFIEAFGMYLLQQGKKVAVLAVDPSSQISGGSILGDKTRMELLSRETNAF 114

Query: 169 FVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL 225
              S  G     +A    E+    +A   DV+I++T G   + +                
Sbjct: 115 IRPSPSGDTLGGVARKTRESMLLCEAYGFDVIIVETVGVGQSETA--------------- 159

Query: 226 DPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
              A      +L      + L+ ++         G+++ K DG  R
Sbjct: 160 -VAAMVDFFLLLQLPNAGDELQGIKKGVMEIA-DGILINKADGDNR 203


>gi|261212015|ref|ZP_05926301.1| Capsular polysaccharide synthesis enzyme CpsD exopolysaccharide
           synthesis [Vibrio sp. RC341]
 gi|260838623|gb|EEX65274.1| Capsular polysaccharide synthesis enzyme CpsD exopolysaccharide
           synthesis [Vibrio sp. RC341]
          Length = 737

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 35/222 (15%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG-VNGVGKTTVIG 129
           + KR  K  +      ++ EL   +    +       +   HV+++   + G GKTT   
Sbjct: 497 VRKRNGKLDAKAYFDAELRELTEAVRTIRTSYLLAHVNQEQHVVMLTSCLPGEGKTTSSI 556

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            L+  ++    K +L   D  + A   +  I   +     + +   S       +     
Sbjct: 557 NLALSLA-QMEKTLLIDCDLRKPAIAHRFAISGSQPGVTNLLTGTQSFE-----DCVYHD 610

Query: 190 QAKKVDVLIIDTAGRLHNN-----------SILMAGIGKMIRVL-----------KRLDP 227
           +   +DVL   TAG   +N            +L    G+  R++             +  
Sbjct: 611 EQSGLDVL---TAGVYSSNPLELLSSTKFSELLADLRGQYQRIVIDTPPCLAVSDSFMLA 667

Query: 228 HAPHSVLQVLDAT-TGQNALRQV--EMFHAVAGTTGLIMTKM 266
               SV+ V+DA  T    +R+V  ++    +   G+++ ++
Sbjct: 668 QHVDSVILVIDANHTRTQVVREVVGKLTQQGSRIDGVVLNRL 709


>gi|257469367|ref|ZP_05633461.1| primosomal protein N' [Fusobacterium ulcerans ATCC 49185]
 gi|317063613|ref|ZP_07928098.1| primosomal protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689289|gb|EFS26124.1| primosomal protein [Fusobacterium ulcerans ATCC 49185]
          Length = 773

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 20/114 (17%)

Query: 21  FASTSLKLKEGI-----TDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRY 75
           F++   K ++ I      + +  + L+D   +EL + L++        +K+   L  K+ 
Sbjct: 177 FSTLEKKFEDVIIYFRGKEEVQKKNLEDKFSKELINKLVK--------EKL---LFLKKN 225

Query: 76  AKDVSVQRVLYDVSELIHK----MLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            K+   QR L ++S+ + +    +     +  N          L+ G+ G GKT
Sbjct: 226 IKEDESQRELQEISDEVSEKNIVLNDEQERAKNIIKDGDNKYYLLKGITGSGKT 279


>gi|294867285|ref|XP_002765043.1| Nod factor export ATP-binding protein I, putative [Perkinsus
           marinus ATCC 50983]
 gi|239864923|gb|EEQ97760.1| Nod factor export ATP-binding protein I, putative [Perkinsus
           marinus ATCC 50983]
          Length = 369

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 68  EELLTKRYAKDVSVQRV-LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           E+L  +    D  V+ + + +++++  K      +  +   +    V+L+ G NG GKTT
Sbjct: 24  EDLREEALRADTIVEGISVRNLTKIYPKQKKAAVESLDIGVAPAEIVVLL-GPNGAGKTT 82

Query: 127 V 127
            
Sbjct: 83  T 83


>gi|238916622|ref|YP_002930139.1| uridine kinase [Eubacterium eligens ATCC 27750]
 gi|238871982|gb|ACR71692.1| uridine kinase [Eubacterium eligens ATCC 27750]
          Length = 535

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 102 PFNWDFSHRPHV--ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
               +   RPH   I++ G +  GKTT   +LS ++   G K    A D +
Sbjct: 259 EIVDEIKKRPHTKFIMIAGPSSSGKTTFSHRLSIQLMANGYKPHPIAVDNY 309


>gi|284988970|ref|YP_003407524.1| capsular exopolysaccharide family [Geodermatophilus obscurus DSM
           43160]
 gi|284062215|gb|ADB73153.1| capsular exopolysaccharide family [Geodermatophilus obscurus DSM
           43160]
          Length = 490

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 60/174 (34%), Gaps = 33/174 (18%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIV-EELLTKRYAKD 78
           G A T ++L   +      + LD+            S +G  V   +V +  L KR+  D
Sbjct: 190 GLAVTRVRLDRTV------KALDEA----------ASLVGAPVIGTVVRDAHLEKRHIAD 233

Query: 79  VSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSD 137
               R   +    +   L         +    P VI+V   +   GKTTV+  L+  ++D
Sbjct: 234 RRGNRRTAEDYRQLRTNLQ------FLNVDAPPRVIMVSSALPSEGKTTVVVNLALALAD 287

Query: 138 AGLKVMLAAGDTFRSAAIDQL---------KIWADRTSADFVCSEIGSDAAALA 182
            G +V L   D  R      L          + A     D V    G   + +A
Sbjct: 288 VGQRVTLVDADLRRPQVTSYLGLVGGVGLTNVLAGTADIDDVKQTYGEGLSVVA 341


>gi|261856111|ref|YP_003263394.1| ATPase AAA [Halothiobacillus neapolitanus c2]
 gi|261836580|gb|ACX96347.1| AAA ATPase central domain protein [Halothiobacillus neapolitanus
           c2]
          Length = 433

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 21/195 (10%)

Query: 96  LMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---- 150
           L+   KP    F + +PH +++ G  GVGKTT    L++ M+ A     +A    F    
Sbjct: 31  LLGEGKPLRLAFEARKPHSMILWGPPGVGKTT----LARLMAKAFDSSFIALSAVFSGVK 86

Query: 151 --RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             R AA+D+ +          +  +          +A            ++   G    N
Sbjct: 87  DIR-AAMDEAERNLALGHPTLLFIDEIHRFNKAQQDALLPYAESG----LVTLIGATTEN 141

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
                    + R    +        L++L       AL  ++           ++   DG
Sbjct: 142 PSFEVNSALLSRAQVYVLKSLSDDELRLLFTRAQDKALGHLQFDPEAID---AVIGLADG 198

Query: 269 TARGGGLIPIVVTHK 283
            AR   L+ ++    
Sbjct: 199 DARR--LLNLLEQLN 211


>gi|223983951|ref|ZP_03634110.1| hypothetical protein HOLDEFILI_01391 [Holdemania filiformis DSM
           12042]
 gi|223964080|gb|EEF68433.1| hypothetical protein HOLDEFILI_01391 [Holdemania filiformis DSM
           12042]
          Length = 293

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 1/136 (0%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           V+  +G NG GKTT I  L   +     +V +   D FR+AA  Q K             
Sbjct: 29  VMGFLGPNGAGKTTTIRTLMGFIQPDHGRVSIKGHDCFRNAAQIQ-KDVGYLPGEIAFMD 87

Query: 173 EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
           ++          A K+    +    ++D         I     G   ++           
Sbjct: 88  DMDGMEFIKFIAAMKKMPNLRKAQELLDYFELEPKGRIKKMSKGMKQKIGLVCALMNEPE 147

Query: 233 VLQVLDATTGQNALRQ 248
           +L + + T+G + L Q
Sbjct: 148 ILILDEPTSGLDPLMQ 163


>gi|194337028|ref|YP_002018822.1| ABC transporter related [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309505|gb|ACF44205.1| ABC transporter related [Pelodictyon phaeoclathratiforme BU-1]
          Length = 269

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS 172
           ++ ++G NGVGKTT+   +   +   G  + +   D  R A  D  ++ A          
Sbjct: 34  IVCLLGPNGVGKTTLFKTILGFIKPLGGVITIDGTDISRFAPKDFARLVAYVPQLHHSPF 93

Query: 173 EI 174
             
Sbjct: 94  PY 95


>gi|167614785|ref|ZP_02383420.1| ClpA/B type protease [Burkholderia thailandensis Bt4]
          Length = 881

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 25/134 (18%)

Query: 44  GVREELEDLL--IRSD---IGVAVAQKIVEEL--------LTKRYAKDVSVQRVLYDV-- 88
               ELE  L  ++ D   +   V + IV E+        + +    +VS  R L D   
Sbjct: 519 DALRELERALSSLQGDCAFVFPEVNEAIVAEIMSDWTGIPVGRMVTDEVSAVRALPDTLA 578

Query: 89  ------SELIHKM--LMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAG 139
                  + +H++   +  ++    D      V L+ G +GVGKT T +  L++ +    
Sbjct: 579 ARVIGQRDALHQICDRVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALA-LAEALYGGE 637

Query: 140 LKVMLAAGDTFRSA 153
             ++      ++ A
Sbjct: 638 QNLITINMSEYQEA 651


>gi|148654713|ref|YP_001274918.1| arginine/ornithine transport system ATPase [Roseiflexus sp. RS-1]
 gi|148566823|gb|ABQ88968.1| LAO/AO transport system ATPase [Roseiflexus sp. RS-1]
          Length = 378

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 75/223 (33%), Gaps = 37/223 (16%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           + +    +    E++ ++L           +         GV GVGK+T I  L   + D
Sbjct: 73  ESNAPAHMALAQEVLRELLPYTGGALRVGIT---------GVPGVGKSTFIEALGTMLCD 123

Query: 138 AGLKVMLAAGD----TFR---SAAIDQLKIWADRTSADFVCSEIGSDAAALA---YEAFK 187
            G +V + A D      R        +++  A   +A    S  G     +A    E   
Sbjct: 124 RGHRVAVLAVDPSSSISRGSILGDKTRMERLARHPNAYIRPSPTGGSLGGVARKSRETLL 183

Query: 188 QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +A   D+++++T G   +   +                      L ++ A  G + L+
Sbjct: 184 VCEAAGFDIILVETVGVGQSEIAVR---------------GMVDFFLLLMLAGAG-DELQ 227

Query: 248 QVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
            ++          L++TK DG  R    +     +   + +L 
Sbjct: 228 GIKKGIIELA-DALLITKADGDNRT-RALAAQAEYTHALRYLT 268


>gi|62087486|dbj|BAD92190.1| transporter 2, ATP-binding cassette, sub-family B isoform 1 variant
           [Homo sapiens]
          Length = 704

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 485 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 537

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 538 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 597

Query: 218 MIRVLKR 224
              V ++
Sbjct: 598 YTDVGEK 604


>gi|1066128|gb|AAB36588.1| ABC-transporter [Gorilla gorilla]
          Length = 703

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|188506|gb|AAA59841.1| putative peptide pump; putative [Homo sapiens]
          Length = 703

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|1066124|gb|AAB36586.1| ABC-transporter [Gorilla gorilla]
          Length = 703

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|73747915|ref|NP_000535.3| antigen peptide transporter 2 isoform 1 [Homo sapiens]
 gi|312066|emb|CAA80522.1| TAP2B [Homo sapiens]
 gi|57209644|emb|CAI41935.1| transporter 2 ATP-binding cassette sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|62897205|dbj|BAD96543.1| transporter 2, ATP-binding cassette, sub-family B isoform 1 variant
           [Homo sapiens]
 gi|157170268|gb|AAI52840.1| Transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
           [synthetic construct]
 gi|168275862|dbj|BAG10651.1| antigen peptide transporter 2 [synthetic construct]
 gi|168985343|emb|CAQ08491.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|168985572|emb|CAQ10283.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
          Length = 703

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|24211982|sp|Q8T5T1|MDN1_GIALA RecName: Full=Midasin; AltName: Full=MIDAS-containing protein
 gi|20147777|gb|AAM12656.1|AF494287_1 midasin [Giardia intestinalis]
          Length = 4835

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 37/163 (22%)

Query: 14   IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            + ++      T  +L  GI ++I  R+ D   ++ + ++ I  ++G+             
Sbjct: 1010 LFRVADRLPRTLTELAMGIFELIGERQRDPADKQLVAEI-IAKNLGLKT---------FS 1059

Query: 74   RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI------------------- 114
              A +      +  +  +I K L   +      F  +   I                   
Sbjct: 1060 VSAAEQEYAIRVRPIQSMIEKALKAGADSPKSAFLLKFQDIVWTPSMIRLFALLFTSVSN 1119

Query: 115  ----LVVGVNGVGKTTVIGKLSKKMSDA----GLKVMLAAGDT 149
                L+VGV+G GKTT +  ++  M+       L     + D 
Sbjct: 1120 GESPLLVGVSGAGKTTSVELIAAIMAQQLVQVNLHKHTESADF 1162


>gi|86140538|ref|ZP_01059097.1| putative transmembrane AAA-metalloprotease FtsH [Leeuwenhoekiella
           blandensis MED217]
 gi|85832480|gb|EAQ50929.1| putative transmembrane AAA-metalloprotease FtsH [Leeuwenhoekiella
           blandensis MED217]
          Length = 657

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 25/177 (14%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           KDV+      +  + I   L    K  N      P   L+VG  G GKT     L+K ++
Sbjct: 200 KDVAGLEGAKEEVQEIVDFLKNPDKYTNLG-GKIPKGALLVGPPGTGKT----LLAKAVA 254

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                   +   +                  +       S    L  +A +++ A    +
Sbjct: 255 GEAKVPFFSLSGS---------------DFVEMFVGVGASRVRDLFKQAKEKSPAIIF-I 298

Query: 197 LIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             ID  GR    +            + ++L  +D    ++ + VL AT   + L   
Sbjct: 299 DEIDAIGRARGKANFSGSNDERENTLNQLLTEMDGFGTNTNVIVLAATNRADVLDTA 355


>gi|83748113|ref|ZP_00945141.1| ClpB protein [Ralstonia solanacearum UW551]
 gi|83725195|gb|EAP72345.1| ClpB protein [Ralstonia solanacearum UW551]
          Length = 908

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 36/209 (17%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           V++EL  +L                L     A+ +     L  +++ +      L  P  
Sbjct: 593 VKDELRTVL---------------NLKPLLAARVIGQDHALQAIAQRVRTASANLEDP-- 635

Query: 105 WDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWA 162
              +    V L  G +GVGKT T +  L+  +     K++      ++ A ++  LK   
Sbjct: 636 ---NKPRGVFLFAGPSGVGKTETALA-LADILYGGERKLVTINMSEYQEAHSVSGLK--- 688

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                    S  G           +  +     V+++D   + H + + M         +
Sbjct: 689 --------GSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGEM 740

Query: 223 KRLD--PHAPHSVLQVLDATTGQNALRQV 249
              +  P    + + +L +  G +A+ Q 
Sbjct: 741 DDAEGRPIDFRNTIIILTSNVGSSAIMQA 769


>gi|159108534|ref|XP_001704537.1| Midasin [Giardia lamblia ATCC 50803]
 gi|157432603|gb|EDO76863.1| Midasin [Giardia lamblia ATCC 50803]
          Length = 4835

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 37/163 (22%)

Query: 14   IRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTK 73
            + ++      T  +L  GI ++I  R+ D   ++ + ++ I  ++G+             
Sbjct: 1010 LFRVADRLPRTLTELAMGIFELIGERQRDPADKQLVAEI-IAKNLGLKT---------FS 1059

Query: 74   RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI------------------- 114
              A +      +  +  +I K L   +      F  +   I                   
Sbjct: 1060 VSAAEQEYAIRVRPIQSMIEKALKAGADSPKSAFLLKFQDIVWTPSMIRLFALLFTSVSN 1119

Query: 115  ----LVVGVNGVGKTTVIGKLSKKMSDA----GLKVMLAAGDT 149
                L+VGV+G GKTT +  ++  M+       L     + D 
Sbjct: 1120 GESPLLVGVSGAGKTTSVELIAAIMAQQLVQVNLHKHTESADF 1162


>gi|330469811|ref|YP_004407554.1| lao/ao transport system ATPase [Verrucosispora maris AB-18-032]
 gi|328812782|gb|AEB46954.1| lao/ao transport system atpase [Verrucosispora maris AB-18-032]
          Length = 311

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 13/108 (12%)

Query: 116 VVGVNG---VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAIDQ----LKIWADRT 165
           VVG+ G   VGK+T   +L + +   G +V + A D        AI      ++  A   
Sbjct: 44  VVGLTGSPGVGKSTTTNELVRALRARGRRVGVLAIDPSSPFTGGAILGDRVRMQDHATDP 103

Query: 166 SADFVCSEIGSD---AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
                           +A   +A +  +    DV++++T G       
Sbjct: 104 GVYIRSMSSRGHLGGLSAATPQAVRVLEGAGCDVVLVETVGVGQAEVE 151


>gi|323139857|ref|ZP_08074887.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
 gi|322394884|gb|EFX97455.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242]
          Length = 619

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKT 125
            K      +    + +  E + +++  L  P  W    +H P  IL+VG  G GKT
Sbjct: 152 EKDVKVGFADVAGVDEAKEELQEIVAFLRDPATWGRLGAHIPKGILLVGPPGTGKT 207


>gi|313884713|ref|ZP_07818469.1| putative ComG operon protein 1 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620081|gb|EFR31514.1| putative ComG operon protein 1 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 337

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 11/70 (15%)

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            V + + +V  +L     KD  +Q       +++ K+              +  +IL  G
Sbjct: 95  NVHLEESLVIRILQAERTKDQHLQTYFPKQEQVLEKL-----------VKRQSGLILFSG 143

Query: 119 VNGVGKTTVI 128
             G GKTT I
Sbjct: 144 PVGSGKTTTI 153


>gi|309366971|emb|CAP20494.2| hypothetical protein CBG_23721 [Caenorhabditis briggsae AF16]
          Length = 1725

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 87/271 (32%), Gaps = 52/271 (19%)

Query: 56   SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
            ++I V + Q++ +    K    +      + ++          L +      + +   +L
Sbjct: 1170 ANINVNLGQELSD---EKWKLSEDRDWMFITEMD------RAHLVRSHTAPAAKKDCTVL 1220

Query: 116  V-VGVNGVGKTTVIGKLSKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            + VG+ GVGKTT +    + +++   +     + D      ID +K+         +   
Sbjct: 1221 MTVGLPGVGKTTWV---RRYLAEHPHEHWTLISADVV----IDAMKV----NGVPRIRLP 1269

Query: 174  IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL---DPHAP 230
                   L     K          +I  A R   N IL        R  K+L   +    
Sbjct: 1270 TLKRPDFLRGIIGKSMSR------LISLAPRRRKNYILDMTNCMADRRKKKLMGFEEFNR 1323

Query: 231  HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              ++ V D  T    L  ++  H           K+D  A    ++       +P+  + 
Sbjct: 1324 KCMIFVPDEDTHMKRL--IKQEHEENE-------KLDTDA----VMQYKAAMSLPI--VA 1368

Query: 291  VGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321
             GE   +L       F     G  D   +++
Sbjct: 1369 EGEPCEELI------FIDPPAGMEDLAFDRV 1393


>gi|297661231|ref|XP_002809169.1| PREDICTED: antigen peptide transporter 2-like isoform 3 [Pongo
           abelii]
          Length = 653

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|294675120|ref|YP_003575736.1| phosphoribulokinase/uridine kinase family protein [Prevotella
           ruminicola 23]
 gi|294472773|gb|ADE82162.1| phosphoribulokinase/uridine kinase family protein [Prevotella
           ruminicola 23]
          Length = 553

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 14/94 (14%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHK----MLMPLSKPF----------NWDFSHRPHVILV 116
                 +D+   R + D++E I       L+ +S+                     ++L+
Sbjct: 234 KEHHQWQDILGLRTIGDLNETIMNGHSSELIQISEALQEKKIANIADEIAQRKGVKLVLI 293

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            G +  GKTT   +LS +++  G+  +  + D +
Sbjct: 294 AGPSSSGKTTTCKRLSVQLAVNGIHPVGISLDDY 327


>gi|323524550|ref|YP_004226703.1| type VI secretion ATPase, ClpV1 family [Burkholderia sp. CCGE1001]
 gi|323381552|gb|ADX53643.1| type VI secretion ATPase, ClpV1 family [Burkholderia sp. CCGE1001]
          Length = 915

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 21/155 (13%)

Query: 58  IGVAVAQKI--VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           +G  V  ++  V  L     A+ +     L ++SE +      L      D S    V L
Sbjct: 569 VGRMVTDQLAAVRSLPAALAARVIGQTDALREISERVQTARAGL-----TDASKPLGVFL 623

Query: 116 VVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVCSE 173
           +VG +GVGKT T +  L++ +      ++      ++ A  +  LK            + 
Sbjct: 624 LVGPSGVGKTETALA-LAEALYGGEQNLITVNMSEYQEAHTVSGLK-----------GAP 671

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            G           +  + +   V+++D   + H +
Sbjct: 672 PGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHRD 706


>gi|227496668|ref|ZP_03926944.1| phosphoribulokinase/uridine kinase [Actinomyces urogenitalis DSM
           15434]
 gi|226833816|gb|EEH66199.1| phosphoribulokinase/uridine kinase [Actinomyces urogenitalis DSM
           15434]
          Length = 220

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS--AAIDQLKIWADRTSADFV 170
           V+ + G  G GK+T+   L++++ + GL       D F    A +DQL     + + D  
Sbjct: 30  VVGLAGAPGSGKSTLARLLARRLDERGLLAGEVPMDGFHMSNAVLDQLGRHGRKGAPDTF 89


>gi|219870451|ref|YP_002474826.1| ATP-dependant Clp protease subunit B [Haemophilus parasuis SH0165]
 gi|219690655|gb|ACL31878.1| ATP-dependent Clp protease chain B/ATPases with chaperone activity,
           ATP-binding subunit [Haemophilus parasuis SH0165]
          Length = 857

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 81/207 (39%), Gaps = 17/207 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K++      I  L K       + +EG  + +   ++ D   EE+ ++L ++  G+ V+
Sbjct: 494 EKMSELQYGKIPALEKQLQEAVKREEEGGENHLLRTKVTD---EEIAEVLSKA-TGIPVS 549

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNG 121
            K++E    K    +  + + +   SE +  +   + +        +RP    L +G  G
Sbjct: 550 -KMMEGEKEKLLRMEEVLHKRVIGQSEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTG 608

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKT +   L+  + D    +        R    + ++  +           +G +    
Sbjct: 609 VGKTELCKTLANFLFDDQDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY 661

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             EA ++   +   V+++D   + H +
Sbjct: 662 LTEAVRR---RPYSVVLLDEVEKAHPD 685


>gi|194466776|ref|ZP_03072763.1| virulence-associated E family protein [Lactobacillus reuteri
           100-23]
 gi|194453812|gb|EDX42709.1| virulence-associated E family protein [Lactobacillus reuteri
           100-23]
          Length = 404

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 116 VVGVNGVGKTTVIGKLSK-KMSDA 138
           +VG  GVGKTT++ KL+    +D 
Sbjct: 165 LVGGQGVGKTTLLKKLAHGWYTDQ 188


>gi|193795932|gb|ACF22018.1| NBS-coding resistance gene protein [Nicotiana tabacum]
          Length = 266

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG------KLSKKMSDAGL 140
           +++ L+ ++L   +K        +  VI ++G+ GVGKTT+        K+ +       
Sbjct: 31  EINILVDRLLSDDAKE------KKLTVIPIIGMAGVGKTTLAKVVYNDEKVKQHFKLKSW 84

Query: 141 KVMLAAGDTFRSA 153
             +    D FR  
Sbjct: 85  ICVSEPYDVFRIT 97


>gi|183602297|ref|ZP_02963664.1| probable permease protein of ABC transporter system
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|241190232|ref|YP_002967626.1| ABC transporter permease [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241195638|ref|YP_002969193.1| ABC transporter permease [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183218511|gb|EDT89155.1| probable permease protein of ABC transporter system
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|240248624|gb|ACS45564.1| ABC transporter permease [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250192|gb|ACS47131.1| ABC transporter permease [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295793219|gb|ADG32754.1| ABC transporter permease [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 611

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 26/182 (14%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSAAIDQLKIWADRT----- 165
           + +VG  G GKTT++  L +    AG K+ +   DT    R    DQ  +    T     
Sbjct: 401 VAIVGPTGAGKTTMVNLLMRFYEIAGGKISIDGIDTKSVPRWNVHDQFSMVLQDTWVFNG 460

Query: 166 ----SADFVCSEIGSDAAALAYEAFK-----QAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
               +  +   ++  +    A  A       ++     D ++ ++A        L+    
Sbjct: 461 TVRENVAYAKEDVTDEQVVAACRAVGLDRYIRSLPNGYDTVLDESATLSQGQKQLLTIAR 520

Query: 217 KMI---------RVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            M+              +D      +   +D  T       +    +      +I+   D
Sbjct: 521 AMVQDSPILILDEATSSVDTRTEELIQTAMDKLTEGRTSFVIAHRLSTIRDADMILVMRD 580

Query: 268 GT 269
           G 
Sbjct: 581 GD 582


>gi|170077793|ref|YP_001734431.1| cell division protein [Synechococcus sp. PCC 7002]
 gi|169885462|gb|ACA99175.1| cell division protein [Synechococcus sp. PCC 7002]
          Length = 637

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 27/171 (15%)

Query: 85  LYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           + +  E + +++  L +P  F    +  P  +L++G  G GKT     L+K ++      
Sbjct: 185 VEEAKEELAEVVTFLKEPNKFTAIGAKIPRGMLLIGPPGTGKT----LLAKAIAGEAGVP 240

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QAKKVDVLIIDT 201
             +   +                  +       S    L  +A + A     +D   ID 
Sbjct: 241 FFSISGS---------------EFVEMFVGVGASRVRDLFRKAQENAPCLVFIDE--IDA 283

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
            GR                + ++L  +D    +S + V+ AT   + L Q 
Sbjct: 284 VGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIVIAATNRPDVLDQA 334


>gi|145221428|ref|YP_001132106.1| cobyrinic acid a,c-diamide synthase [Mycobacterium gilvum PYR-GCK]
 gi|145213914|gb|ABP43318.1| chromosome segregation ATPase [Mycobacterium gilvum PYR-GCK]
          Length = 336

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 54/189 (28%), Gaps = 46/189 (24%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTF-----------RSAAIDQLKIWADRTSADF 169
           GVGKTT    ++  ++  GL+V++   D             R       ++       + 
Sbjct: 83  GVGKTTTAVNIAAALALQGLRVLVIDLDPQGNASTALGIEHRPGTPSSYEVLIGEIGVES 142

Query: 170 -------------------VCSEIGSDAAALAYE-----AFKQAQAKKVDVLIID---TA 202
                              +        + +A E     A  + +    D + ID   + 
Sbjct: 143 ALQRSPHNERLYCIPATIDLAGAEIELVSMVAREGRLRTALAELKHHDFDYVFIDCPPSL 202

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           G L  N+        ++   + L P               +N        +     + ++
Sbjct: 203 GLLTINA--------LVAAPEVLIPIQCEYYALEGVGQLLRNIEMVKAHLNPELDVSTVV 254

Query: 263 MTKMDGTAR 271
           +T  DG  +
Sbjct: 255 LTMHDGRTK 263


>gi|145504575|ref|XP_001438254.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405426|emb|CAK70857.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2419

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 54/135 (40%), Gaps = 22/135 (16%)

Query: 12   SWIRKLTKGFASTSLKL---KEGITDI-----ISSRRLDDGVREELED--LLIRSDIGVA 61
             ++  + KG      K+   KE + +I         +  + + E +    +L  +   + 
Sbjct: 1253 DFVNHIRKGLIRVEGKINEMKEQLKNIGNDIKFLRGKSVEQLFE-IRKWKVLKEA--ALK 1309

Query: 62   VAQKI-----VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
              + I      +E+  K    +   + +L ++ E I+     +++   +    +  V+L+
Sbjct: 1310 NTKSIYVPLETKEIYHKAIVDEKKEESILINL-EQINDTKGEVNE---FLLEEKETVLLI 1365

Query: 117  VGVNGVGKTTVIGKL 131
             GV G GK+T   K+
Sbjct: 1366 HGVAGSGKSTTAKKI 1380


>gi|120610553|ref|YP_970231.1| recombination factor protein RarA [Acidovorax citrulli AAC00-1]
 gi|120589017|gb|ABM32457.1| Recombination protein MgsA [Acidovorax citrulli AAC00-1]
          Length = 462

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 19/183 (10%)

Query: 96  LMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---- 150
           L+   KP    F S +PH ++  G  GVGKTT    L++  + A     +A    F    
Sbjct: 59  LLGEGKPLRLAFQSGKPHSMIFWGPPGVGKTT----LARLTATAFQCEFIALSAVFSGVK 114

Query: 151 --RSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             R AA++Q +          +  +          +A            ++   G    N
Sbjct: 115 DIR-AAMEQAQQNLAMGKHTILFVDEIHRFNKSQQDALLPYAESG----LVTFIGATTEN 169

Query: 209 SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDG 268
                    + R    +        L++L     + AL  +        T   I+   DG
Sbjct: 170 PSFEVNSALLSRAQVYVLKSLTDEELRLLLKRAQEMALGHLR--FDDLATD-TIIGYADG 226

Query: 269 TAR 271
            AR
Sbjct: 227 DAR 229


>gi|4210975|gb|AAD12059.1| Tap2 transporter isoform [Homo sapiens]
          Length = 653

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|268534928|ref|XP_002632597.1| Hypothetical protein CBG23721 [Caenorhabditis briggsae]
          Length = 1730

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 87/271 (32%), Gaps = 52/271 (19%)

Query: 56   SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
            ++I V + Q++ +    K    +      + ++          L +      + +   +L
Sbjct: 1175 ANINVNLGQELSD---EKWKLSEDRDWMFITEMD------RAHLVRSHTAPAAKKDCTVL 1225

Query: 116  V-VGVNGVGKTTVIGKLSKKMSDAGLKVML-AAGDTFRSAAIDQLKIWADRTSADFVCSE 173
            + VG+ GVGKTT +    + +++   +     + D      ID +K+         +   
Sbjct: 1226 MTVGLPGVGKTTWV---RRYLAEHPHEHWTLISADVV----IDAMKV----NGVPRIRLP 1274

Query: 174  IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL---DPHAP 230
                   L     K          +I  A R   N IL        R  K+L   +    
Sbjct: 1275 TLKRPDFLRGIIGKSMSR------LISLAPRRRKNYILDMTNCMADRRKKKLMGFEEFNR 1328

Query: 231  HSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLG 290
              ++ V D  T    L  ++  H           K+D  A    ++       +P+  + 
Sbjct: 1329 KCMIFVPDEDTHMKRL--IKQEHEENE-------KLDTDA----VMQYKAAMSLPI--VA 1373

Query: 291  VGEGINDLEPFVAKDFSAVITGCLDYGEEKI 321
             GE   +L       F     G  D   +++
Sbjct: 1374 EGEPCEELI------FIDPPAGMEDLAFDRV 1398


>gi|73747917|ref|NP_061313.2| antigen peptide transporter 2 isoform 2 [Homo sapiens]
 gi|4877564|gb|AAD31384.1|AF078671_1 transporter 2 isoform [Homo sapiens]
 gi|55961333|emb|CAI17710.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|55961475|emb|CAI18136.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|56207306|emb|CAI18621.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|57209645|emb|CAI41936.1| transporter 2 ATP-binding cassette sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|57209841|emb|CAI41937.1| transporter 2 ATP-binding cassette sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|119624047|gb|EAX03642.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP),
           isoform CRA_a [Homo sapiens]
 gi|168983797|emb|CAQ08243.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|168984789|emb|CAQ08443.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|168985342|emb|CAQ08490.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|168985571|emb|CAQ10282.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
          Length = 653

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|549044|sp|Q03519|TAP2_HUMAN RecName: Full=Antigen peptide transporter 2; Short=APT2; AltName:
           Full=ATP-binding cassette sub-family B member 3;
           AltName: Full=Peptide supply factor 2; AltName:
           Full=Peptide transporter PSF2; Short=PSF-2; AltName:
           Full=Peptide transporter TAP2; AltName: Full=Peptide
           transporter involved in antigen processing 2; AltName:
           Full=Really interesting new gene 11 protein
 gi|34638|emb|CAA47027.1| TAP2 [Homo sapiens]
 gi|1054748|emb|CAA60788.1| TAP2 [Homo sapiens]
 gi|32880155|gb|AAP88908.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|55961334|emb|CAI17711.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|55961476|emb|CAI18137.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|56207307|emb|CAI18622.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|60655767|gb|AAX32447.1| transporter 2 [synthetic construct]
 gi|119624048|gb|EAX03643.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP),
           isoform CRA_b [Homo sapiens]
 gi|158259387|dbj|BAF85652.1| unnamed protein product [Homo sapiens]
 gi|168983798|emb|CAQ08244.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|168984790|emb|CAQ08444.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
 gi|190690485|gb|ACE87017.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) protein
           [synthetic construct]
          Length = 686

 Score = 36.8 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|326560922|gb|EGE11287.1| cell division protease FtsH [Moraxella catarrhalis 7169]
 gi|326571268|gb|EGE21290.1| cell division protease FtsH [Moraxella catarrhalis BC1]
          Length = 631

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 25/172 (14%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           V+    +V+E++  +  P    F    +  P  +L+VG  G GKT     L+K ++    
Sbjct: 164 VEESKQEVAEIVDFLRDP--SKFTKLGATIPRGVLMVGPPGTGKT----LLAKAIAGEAK 217

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
               +   +                  +       S    +  +A K A      +  ID
Sbjct: 218 VPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCIIF-IDEID 261

Query: 201 TAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             GR   + +          + ++L  +D    +  + V+ AT   + L + 
Sbjct: 262 AVGRHRGSGMGGGHDEREQTLNQLLVEMDGFEGNDGVIVIAATNRVDVLDKA 313


>gi|323366154|gb|ADX43579.1| putative nitrogenase reductase [uncultured microorganism]
          Length = 133

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGS 176
           G  G+GK+T    L+  +S+ G +VM    D  R +  + ++     T  D V S E G+
Sbjct: 1   GKGGIGKSTTTANLAAALSEKGYRVMQVGCDPKRDSTRNLMRGELIPTVLDIVRSKETGN 60

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAG 203
               L+ +     +    ++  ++  G
Sbjct: 61  HPGELSLQDI--IREGFNNIRCVEAGG 85


>gi|320104344|ref|YP_004179935.1| twitching motility protein [Isosphaera pallida ATCC 43644]
 gi|319751626|gb|ADV63386.1| twitching motility protein [Isosphaera pallida ATCC 43644]
          Length = 376

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 37/114 (32%), Gaps = 9/114 (7%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
              +E +    + L             +ILV G  G GKTT +  +   +++   + ++ 
Sbjct: 101 RIPNEFLTFEQLGLPTVITDLIQRPRGLILVTGPTGSGKTTSLASMINWLNNNLDRHIIT 160

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
             D      I+             V             EA ++A     D++++
Sbjct: 161 IED-----PIEYYHKHNKSL----VNQREIGVDVPDFPEAIRRALRMDPDIILV 205


>gi|325104383|ref|YP_004274037.1| hypothetical protein Pedsa_1658 [Pedobacter saltans DSM 12145]
 gi|324973231|gb|ADY52215.1| hypothetical protein Pedsa_1658 [Pedobacter saltans DSM 12145]
          Length = 191

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
            +  H P V+L+ G++G GKTT     +K++   G   +  
Sbjct: 27  LNCEHMPKVVLMCGLSGSGKTT----FAKQLECYGFHRLSV 63


>gi|297796141|ref|XP_002865955.1| FTSH11 [Arabidopsis lyrata subsp. lyrata]
 gi|297311790|gb|EFH42214.1| FTSH11 [Arabidopsis lyrata subsp. lyrata]
          Length = 805

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNG 121
           +++ +E+  ++  K     +   D  + + +++  L  P  F       P  IL+ G  G
Sbjct: 345 KELNKEITPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLPKGILLTGAPG 404

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
            GKT     L+K ++             +R+ +  +          +           +L
Sbjct: 405 TGKT----LLAKAIAGEAGVPF-----FYRAGSEFE----------EMFVGVGARRVRSL 445

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
              A K+A      +  ID  G              + ++L  +D    +  + V+ AT 
Sbjct: 446 FQAAKKKAPCIIF-IDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIIVMAATN 503

Query: 242 GQNALR 247
             + L 
Sbjct: 504 LPDILD 509


>gi|297627149|ref|YP_003688912.1| arsenite-transporting ATPase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922914|emb|CBL57496.1| arsenite-transporting ATPase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 591

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 32/192 (16%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +GV   + ++     +    DV V +           +  P       + S R H +++V
Sbjct: 283 VGVDALRTLLSS-TAQTEDSDVDVNQPRRP------SVAGPQLSELIAELSQRDHGLVMV 335

Query: 118 -GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGS 176
            G  GVGKTT+   L+  ++D    V+L   D    AA        D T A     ++ S
Sbjct: 336 MGKGGVGKTTLASALAMGLADRRKDVLLTTTD---PAA------HLDWTIAGQAPFDVTS 386

Query: 177 DAAALAYEAFKQAQAKKVDVLI------IDTAGRLHNNSILMAGIGKMIRVLK--RLDPH 228
               +A         +  D ++      +D  GR +    L +   + + V +       
Sbjct: 387 IDPEVATR-------QYRDHVMATKGASLDEQGRANLAEDLRSPCTEEVAVFQSFAQAVE 439

Query: 229 APHSVLQVLDAT 240
                  V+D  
Sbjct: 440 QSDHRFVVMDTA 451


>gi|323525138|ref|YP_004227291.1| ParA/MinD-like ATPase [Burkholderia sp. CCGE1001]
 gi|323382140|gb|ADX54231.1| ATPase-like, ParA/MinD [Burkholderia sp. CCGE1001]
          Length = 362

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 58  IGVAVAQKIVEELLTK---RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           +G    ++  E +  +          VQ    +VS+ I    +        +  +   V 
Sbjct: 46  LGYPATRQF-EAIRKQFDDALRAVPGVQHTRVEVSQEIAAHTVQRGVKLLPNVKNIVAVA 104

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
              G  GVGK+T    L+  ++  G  V +   D +
Sbjct: 105 SGKG--GVGKSTTAVNLALALASEGASVGILDADIY 138


>gi|254518324|ref|ZP_05130380.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226912073|gb|EEH97274.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 286

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           L ++  L+ K+     +  N       +++ +VGVNG GKTT+I  +     
Sbjct: 4   LMEIENLVKKIGSLHLRGINLKIEPG-YIVGLVGVNGSGKTTLINTILNLYK 54


>gi|194389034|dbj|BAG61534.1| unnamed protein product [Homo sapiens]
          Length = 768

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|171186088|ref|YP_001795007.1| hypothetical protein Tneu_1638 [Thermoproteus neutrophilus V24Sta]
 gi|170935300|gb|ACB40561.1| conserved hypothetical protein [Thermoproteus neutrophilus V24Sta]
          Length = 152

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 12/90 (13%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF---VC 171
           +++GV GVGKTT    L+ ++    ++  +    T R           +    D      
Sbjct: 1   MLLGVGGVGKTT----LAYRLMGLSIRPTV----TLRPGVYRLYVANKEINLIDVPGQYV 52

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
            E+  + A +      +A     DVL  DT
Sbjct: 53  VEVVQNFAKMWTFYVDKAV-YMYDVLHYDT 81


>gi|30585279|gb|AAP36912.1| Homo sapiens transporter 2, ATP-binding cassette, sub-family B
           (MDR/TAP) [synthetic construct]
 gi|60652671|gb|AAX29030.1| transporter 2 ATP-binding cassette sub-family B [synthetic
           construct]
          Length = 687

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|57642072|ref|YP_184550.1| ParA/MinD family ATPase [Thermococcus kodakarensis KOD1]
 gi|57160396|dbj|BAD86326.1| ATPase involved in chromosome partitioning, ParA/MinD family
           [Thermococcus kodakarensis KOD1]
          Length = 276

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           ++V G  G GKTT+   LS   S  G K ++  GD +    + +L       +       
Sbjct: 4   VVVTGRGGAGKTTMSANLSTYFSLNGYKTLVIDGDLY----LPKLAFHFGIYNPVTNLHT 59

Query: 174 IGSDAAALAYEAFKQAQAKKVDVL 197
           + S   A   +A        VDVL
Sbjct: 60  LLSTPDARLKDAIYHDVKTGVDVL 83


>gi|54027641|ref|YP_121883.1| putative chromosome partitioning protein [Nocardia farcinica IFM
           10152]
 gi|54019149|dbj|BAD60519.1| putative chromosome partitioning protein [Nocardia farcinica IFM
           10152]
          Length = 334

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  ++  G+KV++   D   +A+            +    S        
Sbjct: 80  GVGKTTTAVNLAAALAHQGMKVLVIDLDPQGNAST----ALGIDHHSGVPSSYELLIGEV 135

Query: 181 LAYEAFKQAQAKKVDVLI---IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
              +A +Q+   +  + I   ID AG       ++A  G++   ++  +         ++
Sbjct: 136 TVKDAIQQSPHNENLLCIPATIDLAGAEIELVSMVAREGRLKAAIQEANIAGYDIDYVMI 195

Query: 238 DA 239
           D 
Sbjct: 196 DC 197


>gi|326566514|gb|EGE16660.1| cell division protease FtsH [Moraxella catarrhalis 12P80B1]
 gi|326569820|gb|EGE19870.1| cell division protease FtsH [Moraxella catarrhalis BC8]
 gi|326571574|gb|EGE21589.1| cell division protease FtsH [Moraxella catarrhalis BC7]
 gi|326575146|gb|EGE25074.1| cell division protease FtsH [Moraxella catarrhalis CO72]
 gi|326577556|gb|EGE27433.1| cell division protease FtsH [Moraxella catarrhalis O35E]
          Length = 631

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 25/172 (14%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           V+    +V+E++  +  P    F    +  P  +L+VG  G GKT     L+K ++    
Sbjct: 164 VEESKQEVAEIVDFLRDP--SKFTKLGATIPRGVLMVGPPGTGKT----LLAKAIAGEAK 217

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
               +   +                  +       S    +  +A K A      +  ID
Sbjct: 218 VPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCIIF-IDEID 261

Query: 201 TAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             GR   + +          + ++L  +D    +  + V+ AT   + L + 
Sbjct: 262 AVGRHRGSGMGGGHDEREQTLNQLLVEMDGFEGNDGVIVIAATNRVDVLDKA 313


>gi|315059057|gb|ADT73386.1| putative ATP/GTP-binding protein [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 368

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 103/320 (32%), Gaps = 56/320 (17%)

Query: 14  IRKLTK----GFASTSLKLKEGITDIISSRRL-DDGVREELEDLLIRSDIGVAVAQKIVE 68
           + KL      GF    +       + +   ++ DDGV  ++E +   +     VA +I +
Sbjct: 6   LEKLKTVKYPGFEKDIVSF-----NFVKDIKIQDDGVFIDIEIV--SA--NPEVANEIRK 56

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
               +  +        L  ++  I +         N     +  +++  G  GVGK+T  
Sbjct: 57  N-TIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMVSSGKGGVGKSTTT 115

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+  M+  G +V +   D +               +   +  E  +    +  +  K 
Sbjct: 116 VNLAISMAKMGKRVGILDADIYGP-------------NIPRMLGETKTQP-EVVGQRLKP 161

Query: 189 AQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVLQV----LDATTGQ 243
                   + + + G L      LM     +++ +++L        L V    +   TG 
Sbjct: 162 ILTHG---VYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD 218

Query: 244 NALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIPIVVTHKIPVY--------FLG- 290
             +   +     AG    + T     +D + R    + +     IP+         FL  
Sbjct: 219 AQITSAQSIPITAGV--CVSTPQTVSLDDSKR---ALDMFNKLHIPIAGVIENMSGFLCP 273

Query: 291 -VGEGINDLEPFVAKDFSAV 309
             G+  +      A+D +  
Sbjct: 274 DNGKEYDIFGKGTAEDMAKA 293


>gi|297562816|ref|YP_003681790.1| ATPase-like, ParA/MinD [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847264|gb|ADH69284.1| ATPase-like, ParA/MinD [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 379

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 54  IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           I  D+  AV +  V  + + R   DV       ++   +        K   +   +    
Sbjct: 60  IEKDVTAAVTK--VAGVTSVRVELDVMSDEQRKELQTKLRG--GQAEKEIPFAKPNSLTR 115

Query: 114 ILVV--GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           +  V  G  GVGK++V   L+  M+  G KV +   D +
Sbjct: 116 VFAVASGKGGVGKSSVTVNLAAAMAAQGHKVGVVDADIY 154


>gi|270291243|ref|ZP_06197465.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Pediococcus
           acidilactici 7_4]
 gi|304384980|ref|ZP_07367326.1| ATP-dependent Clp protease [Pediococcus acidilactici DSM 20284]
 gi|270280089|gb|EFA25925.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Pediococcus
           acidilactici 7_4]
 gi|304329174|gb|EFL96394.1| ATP-dependent Clp protease [Pediococcus acidilactici DSM 20284]
          Length = 704

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 11/149 (7%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIG 59
             Q V  E       L +    T+ ++K           +DD     E L  + + SD+G
Sbjct: 345 KEQAVKEEDFKRAADLKQRIEETNKQIKNADKKEEVVATVDDVAQSVERLTGIPV-SDMG 403

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
               +++ ++L ++  +K +     +  V+  I +     S+      S      L VG 
Sbjct: 404 ANDIERL-KDLDSRLKSKVIGQDEAVEMVARAIRRNRAGFSEGEQPIGS-----FLFVGP 457

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            GVGKT +  +L+  +   G K  +   D
Sbjct: 458 TGVGKTELAKQLA--LDMFGNKNAIIRLD 484


>gi|257869153|ref|ZP_05648806.1| UvrB/UvrC protein/AAA ATPase [Enterococcus gallinarum EG2]
 gi|257803317|gb|EEV32139.1| UvrB/UvrC protein/AAA ATPase [Enterococcus gallinarum EG2]
          Length = 750

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 80/219 (36%), Gaps = 41/219 (18%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLK-LKEGITDIISSRRLDDGVRE-------ELED-- 51
           ++++   E  ++ R           + + E  T +I+ + ++  V E       EL++  
Sbjct: 369 ASREEDFEKAAYYRDQINKLQKMKERQISEEETPVITEKDMEQIVEERTGIPVGELKEKE 428

Query: 52  --LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
              L          + + ++L +    +D ++ +    V++ I +  + L K      S 
Sbjct: 429 QTQL----------KNLAQDLKSHVIGQDEAIDK----VAKAIRRNRVGLGKQ-----SR 469

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF 169
                L VG  GVGKT +  +L+      G +  +   D          +     + +  
Sbjct: 470 PIGSFLFVGPTGVGKTELAKQLA--YEMFGSEESMIRFDMS--------EYMEKHSVSKL 519

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           + S  G      A +  ++ +     ++++D   + H +
Sbjct: 520 IGSPPGYVGYEEAGQLTEKVRRNPYSLILLDEIEKAHPD 558


>gi|269126988|ref|YP_003300358.1| daunorubicin resistance ABC transporter ATPase subunit
           [Thermomonospora curvata DSM 43183]
 gi|268311946|gb|ACY98320.1| daunorubicin resistance ABC transporter ATPase subunit
           [Thermomonospora curvata DSM 43183]
          Length = 320

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
            V  V+G NG GKTT +  L+  +   G +  +   D  
Sbjct: 36  TVYGVLGPNGAGKTTTLKMLATLLRPDGGRAAVFGHDVV 74


>gi|193795942|gb|ACF22023.1| NBS-coding resistance gene protein [Nicotiana tabacum]
          Length = 277

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG------KLSKKMSDAGL 140
           +++ L+ ++L    K        +  VI ++G+ GVGKTT+        K+ +       
Sbjct: 42  EINILVDRLLSDDVKE------KKLTVIPIIGMAGVGKTTLAKVVYNDEKVKQHFKLKSW 95

Query: 141 KVMLAAGDTFRSA 153
             +    D FR  
Sbjct: 96  ICVSEPYDVFRIT 108


>gi|167381214|ref|XP_001735624.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165902317|gb|EDR28174.1| hypothetical protein EDI_096970 [Entamoeba dispar SAW760]
          Length = 375

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 1   MSNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR--SDI 58
               ++++E+L+ +++        S   K+ + +++    +      +  + LI    DI
Sbjct: 204 FDPTQISAETLTLLKR--AAIERLSDDDKDQLMELLEEENIAKFFAPQQIESLIENNKDI 261

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKML 96
            V V +K++     K Y   +S      +V   + ++L
Sbjct: 262 AVEVLKKVINSENEKAYIDALSSIEPKINVISTVKELL 299


>gi|156101463|ref|XP_001616425.1| pre-mRNA splicing factor RNA helicase [Plasmodium vivax SaI-1]
 gi|148805299|gb|EDL46698.1| pre-mRNA splicing factor RNA helicase, putative [Plasmodium vivax]
          Length = 1127

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 15/147 (10%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            +  +   K  S  +   D+  L   + +  SK    D  +  ++I++VG  G GKTT I
Sbjct: 406 SIFNQESRKQKSTLQDKEDLRRLKESLPIFRSKKELLDAVYNNNIIIIVGETGSGKTTQI 465

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            +      D   K  +            Q +  A  + A  V  E+  +  +L     + 
Sbjct: 466 VQ--YLYEDGYHKNGIICC--------TQPRRVAAVSVAYRVSHEMNVEIGSLVGYTIR- 514

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGI 215
                 D    DT  R   + IL+   
Sbjct: 515 ----FEDNTTKDTKIRYVTDGILLRET 537


>gi|158522802|ref|YP_001530672.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans
           Hxd3]
 gi|158511628|gb|ABW68595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans
           Hxd3]
          Length = 529

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 65  KIVEELLTK-----RYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
             +++ L +        K+V  +  +          L  LS  F    S R   +++VGV
Sbjct: 58  DFIDQALARGAVAVVAEKEVDARDAVTVRVADARNALALLSAVFYGAPSAR---LVLVGV 114

Query: 120 NGV-GKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
            G  GKTT    +   +  AG +V +     FR
Sbjct: 115 TGTNGKTTTAALVEHILVKAGKQVGVIGTGNFR 147


>gi|90407419|ref|ZP_01215603.1| ATP-dependent protease ATP-binding subunit [Psychromonas sp. CNPT3]
 gi|90311450|gb|EAS39551.1| ATP-dependent protease ATP-binding subunit [Psychromonas sp. CNPT3]
          Length = 429

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQK-------IVEELLTKRYAKDVSVQRVLYDVSELIHK 94
           DD ++EE+ +L I +D    V  K       I   L      +D + + +   V     +
Sbjct: 43  DDIIQEEIAELKISADTDAEVVDKPLPTPHEIRANLDDYVIGQDQAKKVLSVAVYNHYKR 102

Query: 95  ML-MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +    ++       S+    IL++G  G GKT +   +++ +
Sbjct: 103 LKYGDVANGVELSKSN----ILLIGPTGSGKTLLAETMARLL 140


>gi|77920336|ref|YP_358151.1| molybdopterin-guanine dinucleotide biosynthesis protein [Pelobacter
           carbinolicus DSM 2380]
 gi|77546419|gb|ABA89981.1| molybdopterin guanine dinucleotide biosynthesis accessory protein
           MobB [Pelobacter carbinolicus DSM 2380]
          Length = 174

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           RP ++ +   +G GKTT++ KL  ++   G KV     D
Sbjct: 2   RPAIVSIAAKSGTGKTTLVVKLIAELKQRGYKVGAIKHD 40


>gi|51598513|ref|YP_072701.1| ATP-dependent protease LA [Borrelia garinii PBi]
 gi|51573084|gb|AAU07109.1| ATP-dependent protease LA [Borrelia garinii PBi]
          Length = 806

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 55/147 (37%), Gaps = 25/147 (17%)

Query: 6   VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELED-LLIRSDIGVAVA- 63
           +  +  S   KL     +  LK  E +          + V +ELE   L+ +     +  
Sbjct: 274 IGDKKNSDFEKLKTKLKTLELK-GESL----------EVVEKELEKFSLLETSSAEYIVI 322

Query: 64  ---QKIVEELLTKRYA---KDVSVQRVLYDVSE------LIHKMLMPLSKPFNWDFSHRP 111
               +++ EL  + +      + +Q+    + +       +   ++          + + 
Sbjct: 323 RNYLELITELPWRDFKINFDKLDLQKSKKILDKTHYGMTEVKDRIIEYISVLKLRKTQKG 382

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDA 138
            +IL+VG  GVGKT++   ++K +   
Sbjct: 383 AIILLVGPPGVGKTSIGAAIAKVLRTK 409


>gi|57865830|ref|YP_189973.1| arsenical pump-driving ATPase [Staphylococcus epidermidis RP62A]
 gi|57636488|gb|AAW53276.1| arsenical pump-driving ATPase [Staphylococcus epidermidis RP62A]
          Length = 565

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + I +     +K  +   + +   +  +G  GVGKTTV  +L+  +S+ G +V+LA  D
Sbjct: 300 DFIVEDHPQFNKLIDEIENSKVQYLFTMGKGGVGKTTVATQLATALSNKGYRVLLATTD 358


>gi|15643514|ref|NP_228560.1| uridine kinase-related protein [Thermotoga maritima MSB8]
 gi|148269323|ref|YP_001243783.1| phosphoribulokinase/uridine kinase [Thermotoga petrophila RKU-1]
 gi|4981276|gb|AAD35832.1|AE001744_22 uridine kinase-related protein [Thermotoga maritima MSB8]
 gi|147734867|gb|ABQ46207.1| phosphoribulokinase/uridine kinase [Thermotoga petrophila RKU-1]
          Length = 555

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 85  LYDVSELIHKM-LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           L  +SE +H+  +  ++     D   R  +IL+ G +  GKTT   +LS ++   GLK +
Sbjct: 265 LMLLSEALHEKKISDIADEIAKDKRKR--LILIAGPSSSGKTTFAKRLSLQLRVNGLKPV 322

Query: 144 LAAGDTF 150
             + D +
Sbjct: 323 AISLDDY 329


>gi|16081583|ref|NP_393942.1| hypothetical protein Ta0464 [Thermoplasma acidophilum DSM 1728]
 gi|10639634|emb|CAC11606.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 321

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 25/174 (14%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF-----------RSA 153
           +  + R H+I + G  GVGK+T+IG LS+K+++ G KV + A D             R  
Sbjct: 40  YGMTGRAHIIGITGPPGVGKSTMIGVLSRKLTEMGKKVSILAVDASSPFSGGTILGNRIR 99

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI--- 210
             D L  +     +       G  + +  +   K   A   D +II+T G   ++     
Sbjct: 100 MQDTLSRYGIYMRSVSNRGMTGGLSRST-WNIVKVLDAAGSDFIIIETVGAGQSDIDIVY 158

Query: 211 --------LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
                   L  G+G  I+ +K          + V++    +++   ++      
Sbjct: 159 LADTVIVTLAPGLGDSIQAIKSGMMEIGD--IFVINKMDREDSFFALKDIMDNV 210


>gi|91977917|ref|YP_570576.1| putative ABC transporter ATP-binding protein [Rhodopseudomonas
           palustris BisB5]
 gi|91684373|gb|ABE40675.1| ABC transporter related [Rhodopseudomonas palustris BisB5]
          Length = 549

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 19/106 (17%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMP---LSKPF-------NWDFSHRPHVIL-V 116
           +ELL K   K     +++  V+E +   ++    L+K F       +  F   P  I+ V
Sbjct: 289 DELLAKASEKQTQAAQIIIPVAERLGNNVVEFDHLTKGFGDKLLIDDLTFKLPPGGIVGV 348

Query: 117 VGVNGVGKTTVIGKLSKKM---SDAGLKVMLAAGDTFRSAAIDQLK 159
           +G NG GKTT+      +M    +   +  +  G+T     +DQ +
Sbjct: 349 IGPNGAGKTTLF-----RMITGQEKPDQGTITVGETVHLGYVDQSR 389


>gi|189499395|ref|YP_001958865.1| ABC transporter-related protein [Chlorobium phaeobacteroides BS1]
 gi|189494836|gb|ACE03384.1| ABC transporter-related protein [Chlorobium phaeobacteroides BS1]
          Length = 608

 Score = 36.8 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            R   I +VG  G GKTT+I  LSK  +     V L   +  R 
Sbjct: 387 KRGEKIAIVGATGSGKTTIINLLSKLYTYQKGSVTLDGAELSRI 430


>gi|332994760|gb|AEF04815.1| type II secretion system protein E:GAF domain protein [Alteromonas
           sp. SN2]
          Length = 738

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 95  MLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVI 128
            L P +     D   +PH IL VVG  G GKTT +
Sbjct: 465 NLAPTNLKRLEDMIKKPHGILLVVGPTGSGKTTTL 499


>gi|331011492|gb|EGH91548.1| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 589

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 97  RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 155

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++            +                  +       S    +  +
Sbjct: 156 T----LIAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 196

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 197 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 255

Query: 242 GQNALR 247
             + L 
Sbjct: 256 RPDVLD 261


>gi|319776274|ref|YP_004138762.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3047]
 gi|317450865|emb|CBY87089.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3047]
          Length = 635

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 147 KVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 201

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 202 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 246

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 247 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 303


>gi|296112664|ref|YP_003626602.1| cell division protease FtsH [Moraxella catarrhalis RH4]
 gi|295920358|gb|ADG60709.1| cell division protease FtsH [Moraxella catarrhalis RH4]
          Length = 634

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 25/172 (14%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           V+    +V+E++  +  P    F    +  P  +L+VG  G GKT     L+K ++    
Sbjct: 167 VEESKQEVAEIVDFLRDP--SKFTKLGATIPRGVLMVGPPGTGKT----LLAKAIAGEAK 220

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
               +   +                  +       S    +  +A K A      +  ID
Sbjct: 221 VPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCIIF-IDEID 264

Query: 201 TAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             GR   + +          + ++L  +D    +  + V+ AT   + L + 
Sbjct: 265 AVGRHRGSGMGGGHDEREQTLNQLLVEMDGFEGNDGVIVIAATNRVDVLDKA 316


>gi|270003038|gb|EEZ99485.1| hypothetical protein TcasGA2_TC000060 [Tribolium castaneum]
          Length = 373

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 64/181 (35%), Gaps = 29/181 (16%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           + R  +++++G  G GKT    KLS +++    K  + + D+       Q++   ++   
Sbjct: 2   ALRLPLVVILGATGSGKT----KLSLELA-QKFKGEIISADS------MQIENLINKNKL 50

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
             +         +L ++   +          +      H +  L +    + + L+ LDP
Sbjct: 51  PIIVGGTNYYIESLLWKILIEEPGDH-----VKALPSRHIDHELSSEE--LHKKLQLLDP 103

Query: 228 HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVY 287
                    L     +  LR +E+          I+ +  G A+GG           P+ 
Sbjct: 104 AMARR----LHPNNKRKILRSLEVLQQKGKPHSQILNEQQG-AKGGSA------TGGPLR 152

Query: 288 F 288
           F
Sbjct: 153 F 153


>gi|226361101|ref|YP_002778879.1| ABC transporter ATP-binding protein [Rhodococcus opacus B4]
 gi|226239586|dbj|BAH49934.1| putative ABC transporter ATP-binding protein [Rhodococcus opacus
           B4]
          Length = 336

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-SAAIDQL 158
           V+G NG GKTT +  L+  +   G +  +   D  R   A+  L
Sbjct: 48  VLGPNGAGKTTTVRMLATLLRPDGGEARIFGHDVVREPNAVRSL 91


>gi|255654995|ref|ZP_05400404.1| putative ABC transporter, permease/ATP-binding protein [Clostridium
           difficile QCD-23m63]
 gi|296449744|ref|ZP_06891514.1| ABC superfamily ATP binding cassette transporter [Clostridium
           difficile NAP08]
 gi|296877939|ref|ZP_06901958.1| multidrug resistance ABC superfamily ATP binding cassette
           transporter, membrane protein [Clostridium difficile
           NAP07]
 gi|296261468|gb|EFH08293.1| ABC superfamily ATP binding cassette transporter [Clostridium
           difficile NAP08]
 gi|296431007|gb|EFH16835.1| multidrug resistance ABC superfamily ATP binding cassette
           transporter, membrane protein [Clostridium difficile
           NAP07]
          Length = 620

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGV 119
                VEE+  +  +K +S+ R       +         L K  N + +     I +VG 
Sbjct: 351 TVMDEVEEIKDEESSKVISMPRGKVQFEHVKFGYSDDFILMKDININLNAG-DKIAIVGP 409

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVML 144
            G GKTT++  L +     G ++ +
Sbjct: 410 TGAGKTTLVNLLMRFYEIQGGRITI 434


>gi|195172173|ref|XP_002026873.1| GL12799 [Drosophila persimilis]
 gi|257096644|sp|B4H7P4|NUBP2_DROPE RecName: Full=Cytosolic Fe-S cluster assembly factor NUBP2 homolog
 gi|194112641|gb|EDW34684.1| GL12799 [Drosophila persimilis]
          Length = 255

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +  +I++ G  GVGK+TV  +L+  +  +G KV L   D
Sbjct: 6   KNVIIVLSGKGGVGKSTVSTQLALALRHSGHKVGLLDID 44


>gi|161504614|ref|YP_001571726.1| hypothetical protein SARI_02728 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865961|gb|ABX22584.1| hypothetical protein SARI_02728 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 864

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 42/220 (19%)

Query: 53  LIRSDIGVAVAQKIVEE------------------LLTKRYAKDVSVQRV-LYDVSELIH 93
           L+  D+ V     ++ +                  +L     K V  Q V L  +++ + 
Sbjct: 521 LLSVDVDVRTVATVIADWTGVPLSSLMKDEQTELLILENEIGKRVVGQEVALAAIAQRLR 580

Query: 94  KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFR- 151
                L+       +    V L+VG +GVGKT T +  L+  M      ++      ++ 
Sbjct: 581 AAKTGLTSE-----NGPQGVFLLVGPSGVGKTKTALA-LADVMYGGEKSLITINLSEYQE 634

Query: 152 SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN-SI 210
              + QLK              +G     +  EA    + +   V+++D   + H +   
Sbjct: 635 PHTVSQLKGSP--------PGYVGYGQGGILTEAV---RKRPYSVVLLDEVEKAHRDVMN 683

Query: 211 LMAG--IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
           L         +R  +  +    ++V+  + +  G + L Q
Sbjct: 684 LFYQVFDRGFMRDGEGREIDFRNTVIL-MTSNLGSDHLMQ 722


>gi|156937149|ref|YP_001434945.1| hydrogenase accessory protein HypB [Ignicoccus hospitalis KIN4/I]
 gi|156566133|gb|ABU81538.1| hydrogenase accessory protein HypB [Ignicoccus hospitalis KIN4/I]
          Length = 213

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 27/225 (12%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
           R++    ++  K L   ++       +   V   +G  G GKT +I  L  ++ D   ++
Sbjct: 3   RLVTIKVDVNQKYLDKAAELRRLYDKYGVKVFEFLGSPGSGKTALIEALVDRLKDK-YEI 61

Query: 143 MLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTA 202
           +   GD   +   +++         +     I        +EA K     K D++ I+  
Sbjct: 62  LYLGGDVASTLDAERVSRHG-VEGVEINTGGICHLEPDHIFEALKDVDLSKYDIMFIENV 120

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           G L               +     P   H  + V+    G++  + V+   +   +  ++
Sbjct: 121 GNL---------------ICPFNFPLGAHKRVMVVSVAEGED--KFVKHPMSTKRSDVIV 163

Query: 263 MTKMDGTARGGG----LIPIVVTHK--IPVYFLG--VGEGINDLE 299
           ++K+D     G     ++    +     PV  +    GEG+ +L+
Sbjct: 164 ISKVDMAGPLGVDVEKMVNDAKSLNPRAPVVLVSVKTGEGLEELQ 208


>gi|84387292|ref|ZP_00990313.1| cell division protein FtsH [Vibrio splendidus 12B01]
 gi|84377939|gb|EAP94801.1| cell division protein FtsH [Vibrio splendidus 12B01]
          Length = 658

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  IL+VG  G GKT     L+K ++     
Sbjct: 160 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGILLVGPPGTGKT----LLAKAIAGEAKV 213

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K A      +  ID 
Sbjct: 214 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDA 257

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 258 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 306


>gi|319957024|ref|YP_004168287.1| adenosinetriphosphatase [Nitratifractor salsuginis DSM 16511]
 gi|319419428|gb|ADV46538.1| Adenosinetriphosphatase [Nitratifractor salsuginis DSM 16511]
          Length = 551

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 21/177 (11%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            +K    DV+    + +    I   L   ++   +D    P  +L+ G  GVGKT     
Sbjct: 147 RSKVRFDDVAGSEEVKEDLREIIDFLRHPARYKKFDIRL-PKGVLLAGPPGVGKT----L 201

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           ++K ++             ++S A              +V                    
Sbjct: 202 MAKAVAGEAKVPF-----FYQSGA---------NIVEIYVGMGPRRVHELFQAAKKAAPA 247

Query: 191 AKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              +D   ID  GR   +         + ++L  +D     S + VL AT     L 
Sbjct: 248 IIFIDE--IDAVGRSRGSLRNEEREATLNQLLTEMDGFESDSGVVVLAATNRMEMLD 302


>gi|307184045|gb|EFN70595.1| Protein YME1-like protein [Camponotus floridanus]
          Length = 753

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 23/186 (12%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDF--SHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           S  + + +  + +  ++  L  P  +       P  +L+VG  G GKT     L++ ++ 
Sbjct: 300 SDVKGVDEAKQELLNIVEFLKNPDKFSALGGKLPKGVLLVGPPGTGKT----LLARAVAG 355

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                          A +    +         V                K      +D  
Sbjct: 356 E--------------AGVPFFHVAGPEFDEILVGQGARRVRDLFRAAKEKAPCVVFIDE- 400

Query: 198 IIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVA 256
            ID+ G    NS+L       + ++L  +D    +  + VL AT  +  L +  M     
Sbjct: 401 -IDSVGAKRTNSVLHPYANQTINQLLSEMDGFRQNEGVIVLGATNRRKDLDKALMRPGRF 459

Query: 257 GTTGLI 262
                I
Sbjct: 460 DVEIYI 465


>gi|300113260|ref|YP_003759835.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
 gi|299539197|gb|ADJ27514.1| ATP-dependent metalloprotease FtsH [Nitrosococcus watsonii C-113]
          Length = 639

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 53/178 (29%), Gaps = 24/178 (13%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +  + + + L    + F       P  +L+VG  G GKT     L+
Sbjct: 150 KVTFGDVAGCDEAKEEVQELVEFLREPGR-FQKLGGKIPRGVLMVGPPGTGKT----LLA 204

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
           + ++            +                  +       S    +   A K A   
Sbjct: 205 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFENAKKHAPCI 249

Query: 193 KVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              +  ID  GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 250 IF-IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLD 306


>gi|260581319|ref|ZP_05849135.1| RNA polymerase sigma factor [Haemophilus influenzae RdAW]
 gi|260091986|gb|EEW75933.1| RNA polymerase sigma factor [Haemophilus influenzae RdAW]
          Length = 336

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 150 KVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 204

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 205 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 249

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 250 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 306


>gi|256847680|ref|ZP_05553125.1| guanylate kinase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715369|gb|EEU30345.1| guanylate kinase [Lactobacillus coleohominis 101-4-CHN]
          Length = 184

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 26/125 (20%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +  V ++ G  G GKTTV    ++ +      +      T R+          ++   D
Sbjct: 2   EKKKVFVITGATGSGKTTV----ARYLK-KKYDMFKVITHTTRTP------RSNEKDGVD 50

Query: 169 FVC--------------SEIGSDAAALAYEAFKQA-QAKKVDVLIIDTAGRLHNNSILMA 213
           +                 E        + E  KQ  +  + DV+++DT G +     L  
Sbjct: 51  YYFENRDSMQKLHLLEQVEYDHHWYGSSLEGLKQGWRNHQFDVIVLDTKGAITYKEKLGD 110

Query: 214 GIGKM 218
               +
Sbjct: 111 QAVII 115


>gi|255641778|gb|ACU21158.1| unknown [Glycine max]
          Length = 228

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 28/210 (13%)

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-DFVCSE 173
           ++ G NG GKTT +  L+     +  +++    D  +S    Q K+  +  S  D + ++
Sbjct: 39  VLTGANGSGKTTFLRMLAGSSRPSAGEILWNGHDIQQSTIFHQYKLQLNWLSLKDAIDNK 98

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
           +        +E  +  + K +  L +   GRL N    M  +G+  R+           +
Sbjct: 99  MSVLNNVQWFELLENKEGKAMAALELMGLGRLANEKPRMLSMGQRKRLQLARLLALDRPI 158

Query: 234 LQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGE 293
             + + +   +                 I+       + GG+  ++V   +PV       
Sbjct: 159 WLLDEPSVALDD--------DGVKLLEYIIA---EHRKYGGI--VIVATHLPV------- 198

Query: 294 GIND-----LEPFVAKDFSAVITGCLDYGE 318
            I D     L P   +  +  +   LD  +
Sbjct: 199 EIEDSLVLRLPPRFPRRMT--LVDMLDRAD 226


>gi|315230215|ref|YP_004070651.1| 2-phosphoglycerate kinase [Thermococcus barophilus MP]
 gi|315183243|gb|ADT83428.1| 2-phosphoglycerate kinase [Thermococcus barophilus MP]
          Length = 299

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 8/98 (8%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHR----PHV 113
           I  ++A ++++  +  R  K            +L+   L   +K + +    +    P +
Sbjct: 33  IAYSIATEVMKHFMEMRKKKVTKDDIREITYEKLVEHGLKEEAKRYLFWRRLKKLKFPMI 92

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           IL+ G  GVGK+T+  +L+ ++        +   DT R
Sbjct: 93  ILIGGTTGVGKSTISTELAFRLGMR----TIIGTDTVR 126


>gi|170287982|ref|YP_001738220.1| phosphoribulokinase/uridine kinase [Thermotoga sp. RQ2]
 gi|170175485|gb|ACB08537.1| phosphoribulokinase/uridine kinase [Thermotoga sp. RQ2]
          Length = 555

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 85  LYDVSELIHKM-LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           L  +SE +H+  +  ++     D   R  +IL+ G +  GKTT   +LS ++   GLK +
Sbjct: 265 LMLLSEALHEKKISDIADEIAKDKRKR--LILIAGPSSSGKTTFAKRLSLQLRVNGLKPV 322

Query: 144 LAAGDTF 150
             + D +
Sbjct: 323 AISLDDY 329


>gi|125531050|gb|EAY77615.1| hypothetical protein OsI_32657 [Oryza sativa Indica Group]
          Length = 728

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           + K +  L +  +      P V+ +VG  GVGKTT+   ++    
Sbjct: 177 MEKAMKDLEEWVDGTACQEPAVVSIVGFGGVGKTTIA--MALYKK 219


>gi|77554612|gb|ABA97408.1| NB-ARC domain containing protein [Oryza sativa Japonica Group]
          Length = 784

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 15/143 (10%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISS-RRLDDGVREELEDLLI----RSDIGVAV 62
            + LS +  L    A+   KL E + D  +  R L   + + + DL +     S+    +
Sbjct: 42  KDELSSMHTLLVKLANNEEKLDEQVKDWRNKVRELSYDIEDCI-DLFLHKVSSSNAKAGL 100

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW---DFSHRPHVILVVGV 119
            +K+  ++    + +      VLY  +E +  +  P  K   W   D SH+  V+ +VG 
Sbjct: 101 VRKMAAKIRKLCHIQIDPRLPVLYVEAEKLVGIDGPREKIIEWLENDESHKLKVVCIVGF 160

Query: 120 NGVGKTTVIGKLSK--KMSDAGL 140
            G+GKTT    L+        G 
Sbjct: 161 GGLGKTT----LANQVYHKMKGQ 179


>gi|42784445|ref|NP_981692.1| capsular exopolysaccharide family protein [Bacillus cereus ATCC
           10987]
 gi|42740377|gb|AAS44300.1| capsular exopolysaccharide family protein [Bacillus cereus ATCC
           10987]
          Length = 225

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWA 162
           G GKTT I  L+      G KV+L   D  +    +   + +
Sbjct: 54  GEGKTTTIANLAVVFGQQGKKVLLIGADLRKPTIQNLFAVHS 95


>gi|88704169|ref|ZP_01101883.1| general secretion pathway protein E [Congregibacter litoralis KT71]
 gi|88701220|gb|EAQ98325.1| general secretion pathway protein E [Congregibacter litoralis KT71]
          Length = 585

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 110 RPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---FRSAAIDQLKIWAD 163
           RPH +L+V G  G GKTT +   +   S       +   +    ++ A ++Q+++ A 
Sbjct: 310 RPHGVLLVTGPTGSGKTTTL--YASLASMDTRDRKIITVEDPVEYQLAGVNQIQVQAQ 365


>gi|93005811|ref|YP_580248.1| urease accessory protein UreG [Psychrobacter cryohalolentis K5]
 gi|92393489|gb|ABE74764.1| urease accessory protein UreG [Psychrobacter cryohalolentis K5]
          Length = 217

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 78/223 (34%), Gaps = 35/223 (15%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           L P  +  + D +  P  + + G  G GKT +  +L +++ D  + + +   D +     
Sbjct: 3   LTPKVENKHSDTTLSPLRLGIGGPVGSGKTALTLRLCQRLRD-DINMAVVTNDIYTKEDS 61

Query: 156 DQLKIWADRTSADFVCSEIGSDAAALAYE---------AFKQAQAKKVDVLIIDTAGRLH 206
           + L       +      E G        E         A  Q Q   ++++II++ G   
Sbjct: 62  EFLTRHEAMPAERIRGVETGGCPHTAIREDASINLSAIAELQQQFAGLELIIIESGG--- 118

Query: 207 NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKM 266
               L A             P      L V+D + G    R  +    +  +  LI+ K 
Sbjct: 119 --DNLAATFS----------PELSDLTLYVIDVSAGDKIPR--KGGPGIMKSDLLIINKT 164

Query: 267 DGTARGGGLIPIVV------THKIPVYF--LGVGEGINDLEPF 301
           D     G  + ++           PV F  +  GEG++D+  F
Sbjct: 165 DLAPFVGASLEVMARDAKKMRGDKPVVFSNMKTGEGVDDIVAF 207


>gi|189499038|ref|YP_001958508.1| Cobyrinic acid ac-diamide synthase [Chlorobium phaeobacteroides
           BS1]
 gi|189494479|gb|ACE03027.1| Cobyrinic acid ac-diamide synthase [Chlorobium phaeobacteroides
           BS1]
          Length = 260

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I + G  GVGKTT+   +++++S+ G +V+    D
Sbjct: 3   IAISGKGGVGKTTLSALMARELSEQGKRVLAIDAD 37


>gi|310790952|gb|EFQ26485.1| thermoresistant glucokinase family carbohydrate kinase [Glomerella
           graminicola M1.001]
          Length = 239

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           H+ LV G  G GKTTV      +     LK+    GD+F   A
Sbjct: 60  HIWLVTGPAGCGKTTV-----AEYLAQALKLPYIEGDSFHPQA 97


>gi|188994119|ref|YP_001928371.1| putative ParA chromosome partitioning protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|188593799|dbj|BAG32774.1| putative ParA chromosome partitioning protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 258

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 7/138 (5%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  ++    KV++   D  ++ A   L +             + +   A
Sbjct: 13  GVGKTTTTINLAASLATLEKKVLVVDADP-QANASSGLGVDIASLQNTVYECLVCNLPVA 71

Query: 181 LAYEAFKQAQAKKVDVL--IIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLD 238
              EA +    + +D++   ID  G       L      M R+L  +       VL    
Sbjct: 72  ---EAVQPTPVEGLDIIPSHIDLVGAEIEMLNLPEREKVMRRLLSGI-ADRYDYVLIDCS 127

Query: 239 ATTGQNALRQVEMFHAVA 256
            + G   +  +   H+V 
Sbjct: 128 PSLGLITVNALVAAHSVI 145


>gi|160896746|ref|YP_001562328.1| general secretory pathway protein E [Delftia acidovorans SPH-1]
 gi|160362330|gb|ABX33943.1| general secretory pathway protein E [Delftia acidovorans SPH-1]
          Length = 575

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 110 RPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---FRSAAIDQLKIWAD 163
           +PH I++V G  G GKTT +   +       +   +   +    ++   I+Q+++   
Sbjct: 321 KPHGIVLVTGPTGSGKTTTL--YAALSKIDAVSNKIITVEDPVEYQLDGINQIQVHPQ 376


>gi|116249232|ref|YP_765073.1| putative conjugal transfer protein TraA [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115253882|emb|CAK12277.1| putative conjugal transfer protein TraA [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 1094

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 57/160 (35%), Gaps = 18/160 (11%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD--AGLKVMLAAGDTFRSA 153
           L    +      +    + +V+G  G GK+T++   + + +    G +V  AA     + 
Sbjct: 375 LSAEQRQAIEHVTGPGQIAVVIGFAGAGKSTMLA--AARHAWEAQGYRVHGAAL----AG 428

Query: 154 -AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILM 212
            A + L+  +   S      E    A         + +    DV +ID  G + +   L 
Sbjct: 429 KAAEGLEQSSGIASRTLASWEYSWQA--------DRGRLNARDVFVIDEGGMVGSRQ-LA 479

Query: 213 AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMF 252
             + ++ R   +L     H  LQ + A     A+ +    
Sbjct: 480 RFVDEVKRAGAKLVLVGDHEQLQAIGAGAPFRAIAEAVGH 519


>gi|78223596|ref|YP_385343.1| FtsH peptidase [Geobacter metallireducens GS-15]
 gi|78194851|gb|ABB32618.1| FtsH peptidase, Metallo peptidase, MEROPS family M41 [Geobacter
           metallireducens GS-15]
          Length = 619

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 56/182 (30%), Gaps = 24/182 (13%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            ++    DV+           I   L    K F       P  +L+VG  G GKT     
Sbjct: 169 KSRVTFDDVAGMENAKLELREIVDYLRD-PKKFQQIGGKVPKGVLLVGPPGTGKT----L 223

Query: 131 LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQ 190
           L++ ++                A +  L I A +    FV    G      A        
Sbjct: 224 LARAVAGE--------------AGVTFLSITASQFIEMFVGVGAGRVRDLFATAKKSAPS 269

Query: 191 AKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
              +D   ID  GR     +          + ++L  +D   PH  + V+ AT   + L 
Sbjct: 270 IIFIDE--IDAVGRSRGAGLGGGHDEREQTLNQLLSEMDGFDPHDEVIVMAATNRPDVLD 327

Query: 248 QV 249
             
Sbjct: 328 AA 329


>gi|88802667|ref|ZP_01118194.1| Deoxynucleoside kinase subfamily, putative [Polaribacter irgensii
           23-P]
 gi|88781525|gb|EAR12703.1| Deoxynucleoside kinase subfamily, putative [Polaribacter irgensii
           23-P]
          Length = 204

 Score = 36.8 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           + + G  G GKTT+   L+K       
Sbjct: 3   VAIAGNIGAGKTTLTKLLAKHYKWKPH 29


>gi|331702403|ref|YP_004399362.1| Xenobiotic-transporting ATPase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129746|gb|AEB74299.1| Xenobiotic-transporting ATPase [Lactobacillus buchneri NRRL
           B-30929]
          Length = 628

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           L K +N        V  +VG  G GKTT+I  L +     G  + L   DT
Sbjct: 400 LMKDYNLAVKRGQQV-AIVGPTGAGKTTIINLLERFYDVKGGSIRLKGVDT 449


>gi|323366130|gb|ADX43567.1| putative nitrogenase reductase [uncultured microorganism]
          Length = 133

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGS 176
           G  G+GK+T    L+  +S+ G +VM    D  R +  + ++     T  D V S E G+
Sbjct: 1   GKGGIGKSTTTANLAAALSEKGYRVMQVGCDPKRDSTRNLMRGELIPTVLDIVRSKETGN 60

Query: 177 DAAALAYEAFKQAQAKKVDVLIIDTAG 203
               L+ +     +    ++  ++  G
Sbjct: 61  HPGELSLQDI--IREGFNNIRCVEAGG 85


>gi|315178996|gb|ADT85910.1| adenylylsulfate kinase [Vibrio furnissii NCTC 11218]
          Length = 206

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
             +P V+   G++G GK+TV G L  +++  G    L  GD  R  
Sbjct: 29  KQKPAVLWFTGLSGAGKSTVAGALESRLATLGYHTYLLDGDNVRHG 74


>gi|302799806|ref|XP_002981661.1| hypothetical protein SELMODRAFT_115113 [Selaginella moellendorffii]
 gi|300150493|gb|EFJ17143.1| hypothetical protein SELMODRAFT_115113 [Selaginella moellendorffii]
          Length = 737

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 62/196 (31%), Gaps = 23/196 (11%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           ++G A   KI +    K    DV+       +V E +H +  P  K +    +  P   L
Sbjct: 226 NVGKAHVTKINKNAKDKVTFNDVAGCDEAKEEVMEFVHFLKNP--KKYEELGAKIPKGAL 283

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VG  G GKT     L+K  +                A++  L I        FV     
Sbjct: 284 LVGPPGTGKT----LLAKATAGE--------------ASVPFLSISGSDFMEMFVGVGPS 325

Query: 176 SDAAALAYEAFKQAQAKKVDVLIID--TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                 A           +D +       GR             + ++L  +D  A  + 
Sbjct: 326 RVRDLFAQARQCAPSIIFIDEIDAIGRARGRGGFAGANDERESTLNQLLVEMDGFATTAG 385

Query: 234 LQVLDATTGQNALRQV 249
           + VL  T   + L + 
Sbjct: 386 VVVLAGTNRPDILDKA 401


>gi|294786884|ref|ZP_06752138.1| ABC transporter, ATP-binding protein [Parascardovia denticolens
           F0305]
 gi|315226520|ref|ZP_07868308.1| multidrug resistance ABC superfamily ATP binding cassette
           transporter, membrane protein [Parascardovia denticolens
           DSM 10105]
 gi|294485717|gb|EFG33351.1| ABC transporter, ATP-binding protein [Parascardovia denticolens
           F0305]
 gi|315120652|gb|EFT83784.1| multidrug resistance ABC superfamily ATP binding cassette
           transporter, membrane protein [Parascardovia denticolens
           DSM 10105]
          Length = 647

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 59/194 (30%), Gaps = 22/194 (11%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML---AAGDTFRS- 152
            PL +  + D +     I +VG  G GKTT++  L +     G  + +      D  R  
Sbjct: 414 TPLIRDLSLD-ALPGQTIAIVGPTGAGKTTLVNLLMRFYEVNGGSISIDGVKTTDITRQD 472

Query: 153 -----AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVD------------ 195
                  + Q     D T  D +   +            + A+A  VD            
Sbjct: 473 LRSHFGMVLQDTWLFDGTIRDNLFYGVHDPDRRTDQRMIEAAKATHVDEFVRRLPQGYDT 532

Query: 196 VLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
           VL  D++        L+     ++   + L      S +     +  QNA+  +      
Sbjct: 533 VLEEDSSELSQGERQLLTICRALLSDPEILILDEATSSVDTRTESKVQNAMNVLRSGRTS 592

Query: 256 AGTTGLIMTKMDGT 269
                 + T  D  
Sbjct: 593 FVIAHRLSTIQDAD 606


>gi|256425796|ref|YP_003126449.1| ABC transporter [Chitinophaga pinensis DSM 2588]
 gi|256040704|gb|ACU64248.1| ABC transporter related [Chitinophaga pinensis DSM 2588]
          Length = 245

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           + D+ +     L P  K  ++ F     ++ ++G NG GKTT I
Sbjct: 3   VQDLHKTYKGALEPSLKGLSFSFPEG-SIVGLLGPNGAGKTTTI 45


>gi|254517128|ref|ZP_05129186.1| general secretion pathway protein E (Type II traffic warden ATPase)
           [gamma proteobacterium NOR5-3]
 gi|219674633|gb|EED31001.1| general secretion pathway protein E (Type II traffic warden ATPase)
           [gamma proteobacterium NOR5-3]
          Length = 585

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 110 RPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT---FRSAAIDQLKIWAD 163
           RPH +L+V G  G GKTT +   +   S       +   +    ++ A ++Q+++ A 
Sbjct: 310 RPHGVLLVTGPTGSGKTTTL--YASLASMDTRDRKIITVEDPVEYQLAGVNQIQVQAQ 365


>gi|260819515|ref|XP_002605082.1| hypothetical protein BRAFLDRAFT_85228 [Branchiostoma floridae]
 gi|229290412|gb|EEN61092.1| hypothetical protein BRAFLDRAFT_85228 [Branchiostoma floridae]
          Length = 1828

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 64/252 (25%), Gaps = 50/252 (19%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW 105
            EELEDLL     G  V + + EE+      +      ++  +   + + +       + 
Sbjct: 568 WEELEDLL-----G-EVTKAMTEEVAGSAVQQHAMAWDLMQVLLGEVLEEITQEVATCSV 621

Query: 106 DFSHRPHVILVVGVNGVGKTTV--------------------------IGKLSKKMSDAG 139
                   ++ V +  V K                                L+    ++G
Sbjct: 622 QLDAEAWDMMQVLLGEVTKVITKQMAASAVRLDAVAWEVMGELLEEVPTALLAA--EESG 679

Query: 140 LKVMLAAGD-----------TFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
           +       D              + A+ + ++       D V  E+  +    A     +
Sbjct: 680 VAPGAVQQDALAWEEMEEVLEEVTGAMSE-EVATRAVRVDNVTREVMGEMIEEAKWMMTE 738

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ-NALR 247
                 D + +D+         L+  +  +      +          V+D   G  + + 
Sbjct: 739 --EVVTDAVQVDSMAWEVMKK-LIREVTNLKATATSIALEEHEEWHLVMDVMDGILDDIS 795

Query: 248 QVEMFHAVAGTT 259
                       
Sbjct: 796 IATAKSVALEVD 807


>gi|189203717|ref|XP_001938194.1| cell cycle checkpoint protein RAD17 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187985293|gb|EDU50781.1| cell cycle checkpoint protein RAD17 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 879

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 10/91 (10%)

Query: 68  EELLTKRYAKDVSVQRVLYDV---SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +E++ +R   +      L ++      +  +   LS  FN     R  ++L+ G  G GK
Sbjct: 189 QEVVDRRPWTEKYGPESLDELAVHKRKVADVRTWLSDVFNGKARKR--LLLLKGPAGSGK 246

Query: 125 TTVIGKLSKKM-----SDAGLKVMLAAGDTF 150
           TT I  LSK++             ++  D+F
Sbjct: 247 TTTISLLSKELGIEMQEWKNPTGSMSTSDSF 277


>gi|111019006|ref|YP_701978.1| ABC transporter, ATP-binding protein [Rhodococcus jostii RHA1]
 gi|110818536|gb|ABG93820.1| ABC transporter, ATP-binding protein [Rhodococcus jostii RHA1]
          Length = 328

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-SAAIDQL 158
           V+G NG GKTT +  L+  +   G +  +   D  R   A+  L
Sbjct: 40  VLGPNGAGKTTTVRMLATLLRPDGGEARIFGHDVVREPNAVRSL 83


>gi|77641403|gb|ABB00546.1| I2 [Nicotiana tabacum]
 gi|77641406|gb|ABB00547.1| I2 [Nicotiana tabacum]
          Length = 242

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG------KLSKKMSDAGL 140
           +++ L+ ++L   +K        +  VI ++G+ GVGKTT+        K+ +       
Sbjct: 20  EINILVDRLLSDDAKE------KKLTVIPIIGMAGVGKTTLAKVVYNDEKVKQHFKLKSW 73

Query: 141 KVMLAAGDTFRSA 153
             +    D FR  
Sbjct: 74  ICVSEPYDVFRIT 86


>gi|115524052|ref|YP_780963.1| putative ABC transporter ATP-binding protein [Rhodopseudomonas
           palustris BisA53]
 gi|115517999|gb|ABJ05983.1| ABC transporter related [Rhodopseudomonas palustris BisA53]
          Length = 549

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 11/70 (15%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKML---MPLSKPF-------NWDFSHRPHVIL-V 116
           E+LL K   K     ++   V+E + + +     LSK F       N  F   P  I+ V
Sbjct: 289 EDLLRKASEKQTQTAQITIPVAERLGQNVVDFEGLSKGFGDKLLIDNLTFKLPPGGIVGV 348

Query: 117 VGVNGVGKTT 126
           +G NG GKTT
Sbjct: 349 IGPNGAGKTT 358


>gi|326563842|gb|EGE14093.1| cell division protease FtsH [Moraxella catarrhalis 46P47B1]
 gi|326576768|gb|EGE26675.1| cell division protease FtsH [Moraxella catarrhalis 101P30B1]
          Length = 631

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 25/172 (14%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           V+    +V+E++  +  P    F    +  P  +L+VG  G GKT     L+K ++    
Sbjct: 164 VEESKQEVAEIVDFLRDP--SKFTKLGATIPRGVLMVGPPGTGKT----LLAKAIAGEAK 217

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
               +   +                  +       S    +  +A K A      +  ID
Sbjct: 218 VPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCIIF-IDEID 261

Query: 201 TAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             GR   + +          + ++L  +D    +  + V+ AT   + L + 
Sbjct: 262 AVGRHRGSGMGGGHDEREQTLNQLLVEMDGFEGNDGVIVIAATNRVDVLDKA 313


>gi|321464266|gb|EFX75275.1| hypothetical protein DAPPUDRAFT_108104 [Daphnia pulex]
          Length = 323

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           L  + K  + D + R  + +++G   VGK+TV   L       G + +    D 
Sbjct: 226 LEQIRKKADADKTKRGPIAMIIGPTDVGKSTVCKLLLNYAVRMGRRPIYVDLDV 279


>gi|322369161|ref|ZP_08043726.1| transport ATPase, component for LAO/AO transport systems
           [Haladaptatus paucihalophilus DX253]
 gi|320550893|gb|EFW92542.1| transport ATPase, component for LAO/AO transport systems
           [Haladaptatus paucihalophilus DX253]
          Length = 331

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 10/106 (9%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS---AAI--DQLKIWADRTSA 167
           VI + G  G GK+T++ K++    + G  V + A D        A+  D++++ ++    
Sbjct: 50  VIGITGSPGAGKSTLVDKVANYYRERGETVGVIAIDPSSPFTGGAVLGDRIRMASNVGDM 109

Query: 168 DFV-----CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           D               +    +A K   A   D +II+T G   N 
Sbjct: 110 DVFFRSMSARGSLGGLSTATSDAVKALDAFGKDKIIIETVGAGQNE 155


>gi|325109856|ref|YP_004270924.1| Xenobiotic-transporting ATPase [Planctomyces brasiliensis DSM 5305]
 gi|324970124|gb|ADY60902.1| Xenobiotic-transporting ATPase [Planctomyces brasiliensis DSM 5305]
          Length = 637

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 25/127 (19%)

Query: 9   ESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVE 68
           E L+ + + +  F ++   L E + D++   R  D   E  +  L              +
Sbjct: 341 EPLAILAQSSASFQNSLSGL-ERVLDLLGESRETDDQLESRQLKL--------------D 385

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           ++  +   +D+  +    +   L +  L           +     + +VG +G GKTT+ 
Sbjct: 386 DVRGQIELRDIGFRYPGTERFALHNISL----------IAEPGQTVALVGPSGAGKTTLC 435

Query: 129 GKLSKKM 135
             +++  
Sbjct: 436 NLIARFY 442


>gi|325680090|ref|ZP_08159657.1| ABC transporter, ATP-binding protein [Ruminococcus albus 8]
 gi|324108253|gb|EGC02502.1| ABC transporter, ATP-binding protein [Ruminococcus albus 8]
          Length = 571

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 15/99 (15%)

Query: 59  GVAVAQKIVEELLT---------KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
            +    K V E+L          K    +V   + +    +   ++L  +S         
Sbjct: 300 AITTTMKKVNEVLELEEMEKGTVKAQGAEVITAKDVKFAYKE-KEILHGIS-----FSVK 353

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +   I  VG +G GK+T+   L++        ++L   D
Sbjct: 354 KGEKIAFVGASGSGKSTIAKLLARFYDVKDGSILLDGTD 392


>gi|288924700|ref|ZP_06418637.1| cell division protein FtsH [Prevotella buccae D17]
 gi|288338487|gb|EFC76836.1| cell division protein FtsH [Prevotella buccae D17]
          Length = 690

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 25/177 (14%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           KDV+ Q       E I + L    K  N      P   L+VG  G GKT     L+K ++
Sbjct: 193 KDVAGQAGAKQEIEEIVEFLKNPKKYTNLG-GKIPKGALLVGPPGTGKT----LLAKAVA 247

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                   +   +                  +       S    L  +A ++A      +
Sbjct: 248 GEAGVPFFSMSGS---------------DFVEMFVGVGASRVRDLFRQAKEKAPCIIF-I 291

Query: 197 LIIDTAGRLHNNSILMA----GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             ID  GR    + +M         +  +L  +D    +S + +L AT   + L   
Sbjct: 292 DEIDAVGRARAKNSMMNGNSEQENTLNALLTEMDGFGTNSGVIILAATNRVDMLDAA 348


>gi|317127477|ref|YP_004093759.1| ABC transporter [Bacillus cellulosilyticus DSM 2522]
 gi|315472425|gb|ADU29028.1| ABC transporter related protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 518

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  + +++  +L+     PLSKP N     R   I +VG NG+GKTT
Sbjct: 320 TPSKTIFEAKDLVIGYDEPLSKPLNLRME-RGQKIALVGANGIGKTT 365


>gi|266625536|ref|ZP_06118471.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288862556|gb|EFC94854.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 270

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           SK        +  V+ V G  G GKTT+  K++K +++    V+L   D
Sbjct: 15  SKEEPETGKRKAQVLAVWGSPGCGKTTISVKIAKYLAEKKKNVILVISD 63


>gi|242243158|ref|ZP_04797603.1| possible arsenite-transporting ATPase [Staphylococcus epidermidis
           W23144]
 gi|242233410|gb|EES35722.1| possible arsenite-transporting ATPase [Staphylococcus epidermidis
           W23144]
          Length = 574

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + I +     +K  +   + +   +  +G  GVGKTTV  +L+  +S+ G +V+LA  D
Sbjct: 309 DFIVEDHPQFNKLIDEIENSKVQYLFTMGKGGVGKTTVATQLATALSNKGYRVLLATTD 367


>gi|271966230|ref|YP_003340426.1| ABC transporter ATP-binding protein [Streptosporangium roseum DSM
           43021]
 gi|270509405|gb|ACZ87683.1| ABC transporter, ATP-binding protein [Streptosporangium roseum DSM
           43021]
          Length = 295

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           + F  D     HV+ +VG NG GKTT++ KL+
Sbjct: 21  REFTIDIPAG-HVVGLVGPNGAGKTTLL-KLA 50


>gi|237751394|ref|ZP_04581874.1| ATP-dependent protease [Helicobacter bilis ATCC 43879]
 gi|229372760|gb|EEO23151.1| ATP-dependent protease [Helicobacter bilis ATCC 43879]
          Length = 817

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 60  VAVAQKIVE-----ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           V   Q+IVE     +LL +R     S  + +    E + +      +  N +  H+  ++
Sbjct: 309 VDAKQRIVEYFAVKQLLEQRAKDKASESKRIESKKEELKEY-SKNDETINTNEKHKGTIL 367

Query: 115 LVVGVNGVGKT 125
              G  GVGKT
Sbjct: 368 CFYGAPGVGKT 378


>gi|229103029|ref|ZP_04233718.1| Multidrug resistance ABC transporter, ATP-binding and permease
           component [Bacillus cereus Rock3-28]
 gi|228680444|gb|EEL34632.1| Multidrug resistance ABC transporter, ATP-binding and permease
           component [Bacillus cereus Rock3-28]
          Length = 563

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 15/204 (7%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFSHRP-HVILVVG 118
             +I++E+   +  KD  + + +    EL +     +             RP   I +VG
Sbjct: 299 VFEIMDEVPEIQNKKDAFIVQNIQGHVELENVSFGYVENKTILKEVSLKARPGETIALVG 358

Query: 119 VNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---------TFRSAAIDQLKIWADRTSADF 169
             G GKTT+I  L++       ++ +   D           +   + Q       T  D 
Sbjct: 359 PTGSGKTTIINLLTRFYDIQQGQIHIDGKDIKDYDINSLRSKIGVVLQDTYLFAGTIMDN 418

Query: 170 VCSEIGSDAAALAYEAFKQAQAK-KVDVLIIDT-AGRLHNNSILMAGIGKMIRVLKRLDP 227
           +       +      A K A A   +  L            S L  G  +++ + + +  
Sbjct: 419 IRYGRLHASDEEVINAAKAASAHSFIKHLPKQYETEIASEGSNLSQGQKQLLAIARAILA 478

Query: 228 HAPHSVLQVLDATTGQNALRQVEM 251
            A   +L    +        Q++ 
Sbjct: 479 DADILILDEATSNIDTRTELQIQA 502


>gi|257065868|ref|YP_003152124.1| arsenite-activated ATPase ArsA [Anaerococcus prevotii DSM 20548]
 gi|256797748|gb|ACV28403.1| arsenite-activated ATPase ArsA [Anaerococcus prevotii DSM 20548]
          Length = 580

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 15/132 (11%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSEL--IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +E L +       +   V  ++ E+  +  ++  L K       ++  VI  +G  GVGK
Sbjct: 286 IENLRSLLVEDKENTSDVDLNIGEIPRLKDIIDDLYK-------NKKKVIFTMGKGGVGK 338

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCS-EIGSDAAALAY 183
           TT+   ++K ++  G KV L   D       + L           +   +   +      
Sbjct: 339 TTMASAIAKGLTAKGEKVHLTTTD-----PANHLTGMIREDDLLTISHIDEEEELKKYQE 393

Query: 184 EAFKQAQAKKVD 195
           E  + A+    D
Sbjct: 394 EVLENARKTMSD 405


>gi|188591540|ref|YP_001796139.1| putative Adenylylsulfate kinase [Cupriavidus taiwanensis]
 gi|170938935|emb|CAP63939.1| putative Adenylylsulfate kinase [Cupriavidus taiwanensis LMG 19424]
          Length = 170

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 12/96 (12%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
            ++++ G+ G GKTT    L++ + D          D  R        I  D T +    
Sbjct: 7   AIVMIQGLPGSGKTT----LARMLLDLIPTASWVNADFVRD------NINRDLTFSFVHR 56

Query: 172 SEIGSDAAALAYEAFKQAQAKKV--DVLIIDTAGRL 205
            E     A +A              D +   T  R 
Sbjct: 57  IEHARRMAEIANLTLNYGANDHCIVDFVCPTTETRR 92


>gi|154503986|ref|ZP_02041046.1| hypothetical protein RUMGNA_01812 [Ruminococcus gnavus ATCC 29149]
 gi|153795413|gb|EDN77833.1| hypothetical protein RUMGNA_01812 [Ruminococcus gnavus ATCC 29149]
          Length = 232

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 44/97 (45%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
             ++S  + + L  L     +    +  +++    +G GK+T+  +L+K +++ G +V+L
Sbjct: 8   KREMSYAMTEELNTLRTNIQFSGVDKKVIVMTSSFSGEGKSTITYQLAKSLAELGKRVLL 67

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
              D  +S  ++ L+  +         S   S + A+
Sbjct: 68  IDADMRKSVMVNMLESGSVDKGLSHYLSGQCSLSEAV 104


>gi|148826966|ref|YP_001291719.1| RNA polymerase sigma factor [Haemophilus influenzae PittGG]
 gi|148718208|gb|ABQ99335.1| RNA polymerase sigma factor [Haemophilus influenzae PittGG]
          Length = 635

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 147 KVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 201

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 202 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 246

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 247 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 303


>gi|118431553|ref|NP_148094.2| transport system kinase [Aeropyrum pernix K1]
 gi|116062878|dbj|BAA80684.2| transport system kinase [Aeropyrum pernix K1]
          Length = 322

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 64/181 (35%), Gaps = 22/181 (12%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSE----LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
           +E+LL   Y+ ++     L  + E       ++L  LS       + R  VI   G+ G 
Sbjct: 4   LEKLLEMAYSGNLRALGRLLTLVENPGSEAVELLERLS-----SRAGRAQVIGFTGIPGA 58

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRS-------AAIDQLKIWADRTSADFVCSEIG 175
           GK+T++ ++   +   G +V + A D               +++  A             
Sbjct: 59  GKSTLVSRVITGLRRRGYRVAVVAIDPTSPFSGGSIMGDRLRMQEHAADPGVFIRSIPTR 118

Query: 176 SDAAALAYEA---FKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHS 232
                L+  A    +   A   D +II+T G   +   ++     +I V     P A   
Sbjct: 119 GIKGGLSMAALAMIEVFDAMGYDKIIIETVGVGQSEVDIINAAHTIIVVT---MPGAGDD 175

Query: 233 V 233
           V
Sbjct: 176 V 176


>gi|114205446|ref|NP_001041525.1| probable gluconokinase isoform b [Mus musculus]
 gi|148709306|gb|EDL41252.1| RIKEN cDNA 5133401N09, isoform CRA_b [Mus musculus]
          Length = 84

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           P V+LV+GV+G GK+TV   L+ K+   
Sbjct: 4   PGVLLVMGVSGSGKSTVGALLASKLGWK 31


>gi|34452360|gb|AAQ72578.1| resistance protein RGC2 [Lactuca sativa]
          Length = 1285

 Score = 36.8 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTV---IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
            D +H+ H+I + G+ GVGKTT+   + K++K+       +    G+  ++  I   +  
Sbjct: 175 LDLNHKSHMIALCGMGGVGKTTMMQRLKKVAKEKRMFSYIIEAVIGE--KTDPISIQEAI 232

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
           +     +   +   S  A +  + FK       D  +I 
Sbjct: 233 SYYLGVELNAN-TKSVRADMLRQGFKAKSDVGKDKFLII 270


>gi|330890868|gb|EGH23529.1| ABC transporter ATP-binding/permease protein [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 603

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 15/142 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKI---- 160
           + +VG NG GKTT+I  L++       +++L   D           R   I Q  I    
Sbjct: 386 VALVGENGSGKTTLIKLLTRLYQPDQGRILLDGSDLQDWDEDALRSRIGVIFQDFIRYQF 445

Query: 161 -WADRTSA-DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
              +     D       +     A +       +++D       GR       ++G    
Sbjct: 446 LVGENLGVGDTHAFHDETRWREAAAQGMAAQFIEQLDKGYATQLGRWFAGGQELSGGQWQ 505

Query: 219 IRVLKRLDPHAPHSVLQVLDAT 240
              L R        +L + + T
Sbjct: 506 KIALSRAYMRRDADILILDEPT 527


>gi|320328188|gb|EFW84192.1| ABC transporter, transmembrane region:ABC transporter [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330880132|gb|EGH14281.1| ABC transporter, transmembrane region:ABC transporter [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 603

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 15/142 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKI---- 160
           + +VG NG GKTT+I  L++       +++L   D           R   I Q  I    
Sbjct: 386 VALVGENGSGKTTLIKLLTRLYQPDQGRILLDGSDLQDWDEDALRSRIGVIFQDFIRYQF 445

Query: 161 -WADRTSA-DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
              +     D       +     A +       +++D       GR       ++G    
Sbjct: 446 LVGENLGVGDTHAFHDETRWREAAAQGMAAQFIEQLDKGYATQLGRWFAGGQELSGGQWQ 505

Query: 219 IRVLKRLDPHAPHSVLQVLDAT 240
              L R        +L + + T
Sbjct: 506 KIALSRAYMRRDADILILDEPT 527


>gi|315446820|ref|YP_004079699.1| chromosome segregation ATPase [Mycobacterium sp. Spyr1]
 gi|315265123|gb|ADU01865.1| chromosome segregation ATPase [Mycobacterium sp. Spyr1]
          Length = 336

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 54/189 (28%), Gaps = 46/189 (24%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTF-----------RSAAIDQLKIWADRTSADF 169
           GVGKTT    ++  ++  GL+V++   D             R       ++       + 
Sbjct: 83  GVGKTTTAVNIAAALALQGLRVLVIDLDPQGNASTALGIEHRPGTPSSYEVLIGEIGVES 142

Query: 170 -------------------VCSEIGSDAAALAYE-----AFKQAQAKKVDVLIID---TA 202
                              +        + +A E     A  + +    D + ID   + 
Sbjct: 143 ALQQSPHNERLYCIPATIDLAGAEIELVSMVAREGRLRTALAELKHHDFDYVFIDCPPSL 202

Query: 203 GRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLI 262
           G L  N+        ++   + L P               +N        +     + ++
Sbjct: 203 GLLTINA--------LVAAPEVLIPIQCEYYALEGVGQLLRNIEMVKAHLNPELDVSTVV 254

Query: 263 MTKMDGTAR 271
           +T  DG  +
Sbjct: 255 LTMHDGRTK 263


>gi|309776525|ref|ZP_07671506.1| phosphoribulokinase family protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915702|gb|EFP61461.1| phosphoribulokinase family protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 541

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHV--ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           + K L  L+          PH   IL+ G +  GKTT   +L+  +   G K +  + D 
Sbjct: 257 VEKKLAELAASI---VQGHPHTKFILIAGPSSAGKTTFSRRLAIHLKILGKKPLPISMDD 313

Query: 150 F 150
           F
Sbjct: 314 F 314


>gi|307104214|gb|EFN52469.1| hypothetical protein CHLNCDRAFT_13249 [Chlorella variabilis]
          Length = 138

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 14/103 (13%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E +      K ++ QR    V  +  +ML  + +           V++VVG  G GKTT 
Sbjct: 3   EAVSDFAKNKTLAEQRRFLPVYGVREEMLQVIRE---------NQVVVVVGETGSGKTT- 52

Query: 128 IGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTSAD 168
             ++++ + + G       G T   R AA+   K  ++    +
Sbjct: 53  --QMTQYLHEDGYTTYGLVGCTQPRRVAAMSVAKRVSEEMGVE 93


>gi|298487353|ref|ZP_07005401.1| ABC transporter, ATP-binding/permease protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158156|gb|EFH99228.1| ABC transporter, ATP-binding/permease protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 603

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 15/142 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKI---- 160
           + +VG NG GKTT+I  L++       +++L   D           R   I Q  I    
Sbjct: 386 VALVGENGSGKTTLIKLLTRLYQPDQGRILLDGSDLQDWDEDALRSRIGVIFQDFIRYQF 445

Query: 161 -WADRTSA-DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
              +     D       +     A +       +++D       GR       ++G    
Sbjct: 446 LVGENLGVGDTHAFHDETRWREAAAQGMAAQFIEQLDKGYATQLGRWFAGGQELSGGQWQ 505

Query: 219 IRVLKRLDPHAPHSVLQVLDAT 240
              L R        +L + + T
Sbjct: 506 KIALSRAYMRRDADILILDEPT 527


>gi|289626608|ref|ZP_06459562.1| ABC transporter, ATP-binding/permease protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289650035|ref|ZP_06481378.1| ABC transporter, ATP-binding/permease protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330868833|gb|EGH03542.1| ABC transporter ATP-binding/permease protein [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 603

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 15/142 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKI---- 160
           + +VG NG GKTT+I  L++       +++L   D           R   I Q  I    
Sbjct: 386 VALVGENGSGKTTLIKLLTRLYQPDQGRILLDGSDLQEWDEDALRSRIGVIFQDFIRYQF 445

Query: 161 -WADRTSA-DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
              +     D       +     A +       +++D       GR       ++G    
Sbjct: 446 LVGENLGVGDTHAFHDETRWREAAAQGMAAQFIEQLDKGYATQLGRWFAGGQELSGGQWQ 505

Query: 219 IRVLKRLDPHAPHSVLQVLDAT 240
              L R        +L + + T
Sbjct: 506 KIALSRAYMRRDADILILDEPT 527


>gi|288554243|ref|YP_003426178.1| BY-kinase tyrosine kinase subunit [Bacillus pseudofirmus OF4]
 gi|288545403|gb|ADC49286.1| BY-kinase tyrosine kinase subunit [Bacillus pseudofirmus OF4]
          Length = 235

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 75/230 (32%), Gaps = 43/230 (18%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            T++  K VS       ++E    +   + +  N D      +++     G GK+T I  
Sbjct: 11  RTQQQRKVVSHSNPKSPIAEQYRTLRTNI-QFANMDGEEMRSILVTSAGPGEGKSTTIAN 69

Query: 131 LSKKMSDAGLKVMLAAGDTFRSA-------------------------AIDQLKIWADR- 164
           L+  ++  G +V+L   D  +                           A+ + K+     
Sbjct: 70  LAIVLAQQGKRVLLLDADLRKPTVHYTFQVDNTFGLTNVLTKQHTLSEAVKETKVEELHV 129

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            +   +        ++ A     +   +  D +++DT         L     +++  L  
Sbjct: 130 LTCGPIPPNPSELLSSKAMADLLEDAFQYYDYVLLDTP------PTLAVTDAQILANLT- 182

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMF--HAVAGTTGLIMT--KMDGTA 270
                  S+L V    T ++  ++       A A   G ++   K D T+
Sbjct: 183 -----DGSILVVSSGKTNRDGAKKATEQLKQAQAKLIGAVLNDKKKDNTS 227


>gi|257481643|ref|ZP_05635684.1| ABC transporter, transmembrane region:ABC transporter [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|320323556|gb|EFW79640.1| ABC transporter, transmembrane region:ABC transporter [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|330986041|gb|EGH84144.1| ABC transporter, transmembrane region:ABC transporter [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331013360|gb|EGH93416.1| ABC transporter, transmembrane region:ABC transporter [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 603

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 15/142 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKI---- 160
           + +VG NG GKTT+I  L++       +++L   D           R   I Q  I    
Sbjct: 386 VALVGENGSGKTTLIKLLTRLYQPDQGRILLDGSDLQDWDEDALRSRIGVIFQDFIRYQF 445

Query: 161 -WADRTSA-DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
              +     D       +     A +       +++D       GR       ++G    
Sbjct: 446 LVGENLGVGDTHAFHDETRWREAAAQGMAAQFIEQLDKGYATQLGRWFAGGQELSGGQWQ 505

Query: 219 IRVLKRLDPHAPHSVLQVLDAT 240
              L R        +L + + T
Sbjct: 506 KIALSRAYMRRDADILILDEPT 527


>gi|227544329|ref|ZP_03974378.1| guanylate kinase [Lactobacillus reuteri CF48-3A]
 gi|300908434|ref|ZP_07125897.1| guanylate kinase [Lactobacillus reuteri SD2112]
 gi|227185671|gb|EEI65742.1| guanylate kinase [Lactobacillus reuteri CF48-3A]
 gi|300893841|gb|EFK87199.1| guanylate kinase [Lactobacillus reuteri SD2112]
          Length = 190

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRT 165
            +  +V +V G  G GKTTV    +  + D      +    T   R    D +    +  
Sbjct: 2   KNNKYVFIVTGAAGSGKTTV----ANYLQDHYDMHRVITHTTRLPRPGEQDGVDYHFETP 57

Query: 166 SA-----DFVCSEIGSDAAALAYEAFKQAQAKK-VDVLIIDTAGRLHNNSILMAGIGKMI 219
           S+                   + E   +   +   DV+++DTAG +  +  L A    + 
Sbjct: 58  SSLKKLHLLEQVTYDQFQYGSSLEGLAEGWKQGENDVIVLDTAGAITYHHQLGAQAVIIF 117

Query: 220 RVLKRLDPHAPHSVL 234
             +  +   A    L
Sbjct: 118 LTVTHMASLAKRMTL 132


>gi|221194962|ref|ZP_03568018.1| ABC transporter ATP-binding protein [Atopobium rimae ATCC 49626]
 gi|221184865|gb|EEE17256.1| ABC transporter ATP-binding protein [Atopobium rimae ATCC 49626]
          Length = 621

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           PL    N   +H    I +VG  G GKTT+I  L +     G ++ L   DT R+ A   
Sbjct: 398 PLMHDVNL-VAHPGQKIAIVGATGAGKTTLINLLMRFYEINGGRITLDGIDT-RNLARAD 455

Query: 158 LKIW 161
           L+  
Sbjct: 456 LRRQ 459


>gi|160942272|ref|ZP_02089581.1| hypothetical protein CLOBOL_07158 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434829|gb|EDP12596.1| hypothetical protein CLOBOL_07158 [Clostridium bolteae ATCC
           BAA-613]
          Length = 270

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                V+ V G  G GK+TV  KL+K +      V+L   D
Sbjct: 23  EPGNQVLAVWGSPGSGKSTVAVKLAKYLVGKKRNVVLLTCD 63


>gi|145636206|ref|ZP_01791876.1| hypothetical protein CGSHiHH_09665 [Haemophilus influenzae PittHH]
 gi|145270728|gb|EDK10661.1| hypothetical protein CGSHiHH_09665 [Haemophilus influenzae PittHH]
          Length = 597

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           ++ +        ++ Q+V       +   L  L    +    +   VI  +G  GVGKTT
Sbjct: 307 IDSIRNLLKKDQINEQKV------EVKGKLFNLDDVVSDLIKNNRKVIFTMGKGGVGKTT 360

Query: 127 VIGKLSKKMSDAGLKVMLAAGD 148
           +   ++ K+S  G KV LA  D
Sbjct: 361 IASSVALKLSKLGKKVHLATTD 382


>gi|134302202|ref|YP_001122171.1| CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|134049979|gb|ABO47050.1| CobQ/CobB/MinD/ParA nucleotide binding domain protein [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 213

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT    ++  + + G +V +   D  +  A   +      ++  ++  E       
Sbjct: 17  GSGKTTTAINIACGLKELGYRVAIIDMDKDKPDAYMWMTKNNQESNFVYILDEKNVREKV 76

Query: 181 LAYEAFKQAQAKKVDVLIIDT 201
           +          + +D ++IDT
Sbjct: 77  I-------ELKQGLDFIVIDT 90


>gi|145522898|ref|XP_001447293.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414793|emb|CAK79896.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2077

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 26/127 (20%)

Query: 8   SESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDL---LIRSDIGVAVAQ 64
           ++    ++ ++    S   K  + + +I   + L +  ++ ++ +   L   D       
Sbjct: 391 NQMKDQLKSMSDDIKSLRGKSVQQLLEIRKWKVLKEAAQKNVKTIYVPLKSQD------- 443

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
                  TKR   ++       D+S  ++K L+  ++           V+L+ GV G GK
Sbjct: 444 ------KTKRNTNNLMNLEQFDDLSGEVNKFLLKENE----------TVLLIHGVAGSGK 487

Query: 125 TTVIGKL 131
           +TV  K+
Sbjct: 488 STVAKKI 494


>gi|222056222|ref|YP_002538584.1| LAO/AO transport system ATPase [Geobacter sp. FRC-32]
 gi|221565511|gb|ACM21483.1| LAO/AO transport system ATPase [Geobacter sp. FRC-32]
          Length = 321

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 13/151 (8%)

Query: 69  ELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
            L  K    D+ S  R++ D+ + +   +  L K   +  + R ++I + G  G GK+T+
Sbjct: 2   SLAEKILQGDIRSAARLMRDIDDGLRSSVEELKKL--YPHTGRAYIIGLTGPPGAGKSTL 59

Query: 128 IGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQ----LKIWADRTSADFVCSEIGSDAAA 180
           + +L+     AG +V + A D    F   AI      +   AD                 
Sbjct: 60  VDQLTAAYRKAGKRVGVVAIDPTSPFTGGAILGDRIRMNRHADDDGVFIRSLATRGHLGG 119

Query: 181 LAY---EAFKQAQAKKVDVLIIDTAGRLHNN 208
           L+           A  +D++II+T G   + 
Sbjct: 120 LSRSTGNVVNVMDAMGMDIVIIETVGVGQDE 150


>gi|83594460|ref|YP_428212.1| ABC transporter protein [Rhodospirillum rubrum ATCC 11170]
 gi|83577374|gb|ABC23925.1| ABC transporter component [Rhodospirillum rubrum ATCC 11170]
          Length = 316

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           S  R +  V +L+ +               R  +   +G NG GKTT I  L   ++  G
Sbjct: 11  STTRAVIAVEDLVKRFGERTVVDHVNLTVDRGKICGFLGPNGSGKTTTIRMLCGLLTPDG 70

Query: 140 LKVMLAAGDTFR 151
            +      D  R
Sbjct: 71  GRGTCLGHDILR 82


>gi|58865396|ref|NP_001011913.1| fidgetin-like protein 1 [Rattus norvegicus]
 gi|81911001|sp|Q6GX84|FIGL1_RAT RecName: Full=Fidgetin-like protein 1
 gi|48686585|gb|AAT46048.1| fidgetin-like 1 [Rattus norvegicus]
 gi|48686587|gb|AAT46049.1| fidgetin-like 1 [Rattus norvegicus]
 gi|149016958|gb|EDL76063.1| rCG24478 [Rattus norvegicus]
          Length = 677

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 57  DIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLSKP-FNWDFSHRPHVI 114
           ++   + + I+ E++             +      I ++++ P+ +P         P  I
Sbjct: 381 NVEPRMVELIMNEIMDHGPPVHWEDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPKGI 440

Query: 115 LVVGVNGVGKTTVIGK 130
           L+ G  G GKT  IGK
Sbjct: 441 LLFGPPGTGKTL-IGK 455


>gi|89895377|ref|YP_518864.1| carbon monoxide dehydrogenase maturation factor [Desulfitobacterium
           hafniense Y51]
 gi|89334825|dbj|BAE84420.1| carbon monoxide dehydrogenase maturation factor [Desulfitobacterium
           hafniense Y51]
          Length = 261

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I V G  GVGKTT+ G L++ ++  G +V+    D
Sbjct: 3   IAVTGKGGVGKTTLSGTLARLLAADGYRVLAVDAD 37


>gi|27381796|ref|NP_773325.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA
           110]
 gi|27354965|dbj|BAC51950.1| bll6685 [Bradyrhizobium japonicum USDA 110]
          Length = 549

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN----------WDFSHRPHVIL-V 116
           EELL +   K     +++  V+E +   ++                   F   P  I+ V
Sbjct: 289 EELLKQASEKQTQTAQIIIPVAERLGANVVDFEGLSKGYGDRLLIDDLTFKLPPGGIVGV 348

Query: 117 VGVNGVGKTT---VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           +G NG GKTT   +I K      +   K  +  G+T     +DQ +
Sbjct: 349 IGANGAGKTTLFKMITK-----QETPDKGTITVGETVHLGYVDQSR 389


>gi|88859883|ref|ZP_01134522.1| helicase, ATP-dependent [Pseudoalteromonas tunicata D2]
 gi|88817877|gb|EAR27693.1| helicase, ATP-dependent [Pseudoalteromonas tunicata D2]
          Length = 1321

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 43/219 (19%)

Query: 10  SLSWIRKLTKGFASTSLKLKEGITD--IISSRRLD--DGVREELEDLLIRSDIGVAVAQK 65
            +  + ++ +        LK+ +        RRLD    ++ E +   + +++ +A+ + 
Sbjct: 19  QIGIVSRMAQATRELYRSLKQCLNKDQFFFKRRLDGIAKIKNEEKQAKVLAEVTLAIEKS 78

Query: 66  I------VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           I      +  L    Y +++ V +   D+ E I                    V++V G 
Sbjct: 79  IATRAQRLANLPKVSYPENLPVSQKKDDIKEAIAN----------------NQVVIVAGE 122

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD----------F 169
            G GKTT + K+  ++   G    +      R AA       A+  +            F
Sbjct: 123 TGSGKTTQLPKICLEL-GRGAAGFIGHTQPRRLAARTVANRIAEELNCPLGQEVGFKIRF 181

Query: 170 VCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTA 202
                   A  L  +    A+ +        D +IID A
Sbjct: 182 NDQVSDKTAVKLMTDGILLAEIQHDRFLNQYDTIIIDEA 220


>gi|254495201|ref|ZP_05108125.1| deoxynucleoside kinase [Polaribacter sp. MED152]
 gi|85819553|gb|EAQ40710.1| deoxynucleoside kinase [Polaribacter sp. MED152]
          Length = 204

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           + + G  G GKTT+   L+K       
Sbjct: 3   VAIAGNIGAGKTTLTKLLAKHYKWKPH 29


>gi|329123416|ref|ZP_08251980.1| ATP-dependent metallopeptidase HflB [Haemophilus aegyptius ATCC
           11116]
 gi|327470998|gb|EGF16453.1| ATP-dependent metallopeptidase HflB [Haemophilus aegyptius ATCC
           11116]
          Length = 638

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 150 KVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 204

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 205 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 249

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 250 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 306


>gi|326521072|dbj|BAJ96739.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 311

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 111 PHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           P V++V  G  GVGKTT    L+  ++  GL V+    D
Sbjct: 41  PRVVVVTSGKGGVGKTTTTANLAASLARLGLPVVAVDAD 79


>gi|302389758|ref|YP_003825579.1| LAO/AO transport system ATPase [Thermosediminibacter oceani DSM
           16646]
 gi|302200386|gb|ADL07956.1| LAO/AO transport system ATPase [Thermosediminibacter oceani DSM
           16646]
          Length = 309

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 19/159 (11%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
           + +A+KI+++           ++R   +  E + K+         + ++    VI + G 
Sbjct: 1   MDLAEKILQKDKRAVARLITLIERENLEAREALKKL---------YKYTGNSFVIGITGP 51

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWADRTSAD-------F 169
            G GK++++ +L+KK+ + G  V + A D    F   A+   +I     + D        
Sbjct: 52  PGAGKSSLVNELAKKIREKGKTVGIIAVDPTSPFTGGALLGDRIRMQDLTLDEGIFIRSM 111

Query: 170 VCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                       AY+A K   A  +D +II+T G     
Sbjct: 112 GSRGSLGGITKAAYDAVKVLDAYGMDYVIIETVGVGQTE 150


>gi|229847494|ref|ZP_04467591.1| RNA polymerase sigma factor [Haemophilus influenzae 7P49H1]
 gi|229809635|gb|EEP45362.1| RNA polymerase sigma factor [Haemophilus influenzae 7P49H1]
          Length = 480

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 147 KVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 201

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 202 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 246

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 247 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 303


>gi|160938882|ref|ZP_02086233.1| hypothetical protein CLOBOL_03776 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437845|gb|EDP15605.1| hypothetical protein CLOBOL_03776 [Clostridium bolteae ATCC
           BAA-613]
          Length = 261

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 109 HRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVM 143
             P+ + +V G  G GKTT++ K++ K    G  V 
Sbjct: 27  RNPYKLFMVFGKKGSGKTTLMCKMALKYRKKGWHVY 62


>gi|254192222|ref|ZP_04898718.1| TccC4 [Burkholderia pseudomallei Pasteur 52237]
 gi|157987558|gb|EDO95327.1| TccC4 [Burkholderia pseudomallei Pasteur 52237]
          Length = 946

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 41/156 (26%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA--- 63
             E + ++RKL +GF   S K KE        R +D+              +G  V    
Sbjct: 712 EKERIRFMRKL-EGFIVNSNKFKELFD--FGKRHIDE--------------VGYDVTPES 754

Query: 64  ------QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-----FNWDFSHRPH 112
                 +KI  ++      ++ S+   LYD   L++  +   S+       N     + +
Sbjct: 755 FDRLNLRKISTQMTDLEKIREGSLSVSLYD--SLVNIYIEGKSEERDRVFQNIQGGDKLY 812

Query: 113 VIL-----VVGVNGV---GKTTVIGKLSKKMSDAGL 140
           V+        G+ G    GK     KL++    A L
Sbjct: 813 VLGHGKADYAGLEGAAEGGKALTFKKLARNFRKANL 848


>gi|254300548|ref|ZP_04967994.1| TccC4 [Burkholderia pseudomallei 406e]
 gi|157810402|gb|EDO87572.1| TccC4 [Burkholderia pseudomallei 406e]
          Length = 952

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 41/156 (26%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA--- 63
             E + ++RKL +GF   S K KE        R +D+              +G  V    
Sbjct: 718 EKERIRFMRKL-EGFIVNSNKFKELFD--FGKRHIDE--------------VGYDVTPES 760

Query: 64  ------QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-----FNWDFSHRPH 112
                 +KI  ++      ++ S+   LYD   L++  +   S+       N     + +
Sbjct: 761 FDRLNLRKISTQMTDLEKIREGSLSVSLYD--SLVNIYIEGKSEERDRVFQNIQGGDKLY 818

Query: 113 VIL-----VVGVNGV---GKTTVIGKLSKKMSDAGL 140
           V+        G+ G    GK     KL++    A L
Sbjct: 819 VLGHGKADYAGLEGAAEGGKALTFKKLARNFRKANL 854


>gi|150866055|ref|XP_001385524.2| hypothetical protein PICST_48947 [Scheffersomyces stipitis CBS
           6054]
 gi|149387311|gb|ABN67495.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 725

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 17/127 (13%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI----VEELLTKRYAK 77
            S+S  + + +  + S   L   VRE    + + S       ++I     ++   + + +
Sbjct: 28  TSSSTSIID-MNKLFSRAELKLKVRENERKIRLES---ANTTKEISGMWTDKYRPRSFVQ 83

Query: 78  --DVSVQRVLYDVSELIHK-----MLMPLSKPFNWDFSHRPH--VILVVGVNGVGKTTVI 128
                  R    +   + K          ++    D   RPH  ++LV G  G+GKTT +
Sbjct: 84  LCSAGNDRQYRLILHWLKKWSSVVYREDSTRNDGVDSLGRPHRKILLVHGPTGIGKTTAV 143

Query: 129 GKLSKKM 135
             L+K++
Sbjct: 144 HLLAKQL 150


>gi|148243467|ref|YP_001228624.1| hypothetical protein SynRCC307_2368 [Synechococcus sp. RCC307]
 gi|147851777|emb|CAK29271.1| Conserved hypothetical protein [Synechococcus sp. RCC307]
          Length = 215

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 30/197 (15%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GV KT     L+   +  G  V +   D  RSA     +        D V  E  + A  
Sbjct: 11  GVAKTCTSIHLASVWAQQGYAVCVVDADRNRSATAYGARGL---LGFDVVPVEAAAKATR 67

Query: 181 LAYEAFKQAQAK-----------KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHA 229
            A       QA              D++++ T      +  L   +  ++R         
Sbjct: 68  TAQIVITDGQASSHEDELKNLSAGSDIVVLPTT-PQARSVELTIEMSAILRGY-----GI 121

Query: 230 PHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFL 289
            H+ L V   T  Q    +        G        +DG+                   +
Sbjct: 122 RHAALLVKVDTRKQRFADEARDTLEGFGLEV-----LDGSIPLLAAFDKAEVQG-----V 171

Query: 290 GVGEGINDLEPFVAKDF 306
            V E ++D      +  
Sbjct: 172 TVREAVDDKGRSDPRRM 188


>gi|119173630|ref|XP_001239227.1| hypothetical protein CIMG_10249 [Coccidioides immitis RS]
          Length = 731

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 29/151 (19%)

Query: 20  GFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKI---VEELLTKRYA 76
           GF +   +   GI ++  S+  D  V EE E +L R D       +    +  +      
Sbjct: 111 GFDADRNQSFMGIMEVNDSKLADSRVAEEEEVVLYRVD-----KDEFSNGMATVRNNLVC 165

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPF------------NWDFSHRPHVI---------L 115
              + Q     + +LI + + P  KP             N +   +  +          L
Sbjct: 166 MMDNSQFRSKRLRDLIIEGVPPSFKPLSSVPNLSASAEANLNVDQKEAIEKVMSADDYAL 225

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAA 146
           V+G+ G GKTT I +L + +   G  V+LA+
Sbjct: 226 VLGMPGTGKTTTIAQLIRAIVAQGKSVLLAS 256


>gi|77641449|gb|ABB00567.1| I2 [Nicotiana tabacum]
          Length = 213

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG------KLSKKMSDAGL 140
           +++ L+ ++L   +K        +  VI ++G+ GVGKTT+        K+ +       
Sbjct: 16  EINILVDRLLSDDAKE------KKLTVIPIIGMAGVGKTTLAKVVYNGEKVKQHFKLKSW 69

Query: 141 KVMLAAGDTFRSA 153
             +    D FR  
Sbjct: 70  ICVSEPYDVFRIT 82


>gi|76819547|ref|YP_335319.1| TccC4 [Burkholderia pseudomallei 1710b]
 gi|254265048|ref|ZP_04955913.1| TccC4 [Burkholderia pseudomallei 1710a]
 gi|76584020|gb|ABA53494.1| TccC4 [Burkholderia pseudomallei 1710b]
 gi|254216050|gb|EET05435.1| TccC4 [Burkholderia pseudomallei 1710a]
          Length = 952

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 41/156 (26%)

Query: 7   ASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA--- 63
             E + ++RKL +GF   S K KE        R +D+              +G  V    
Sbjct: 718 EKERIRFMRKL-EGFIVNSNKFKELFD--FGKRHIDE--------------VGYDVTPES 760

Query: 64  ------QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-----FNWDFSHRPH 112
                 +KI  ++      ++ S+   LYD   L++  +   S+       N     + +
Sbjct: 761 FDRLNLRKISTQMTDLEKIREGSLSVSLYD--SLVNIYIEGKSEERDRVFQNIQGGDKLY 818

Query: 113 VIL-----VVGVNGV---GKTTVIGKLSKKMSDAGL 140
           V+        G+ G    GK     KL++    A L
Sbjct: 819 VLGHGKADYAGLEGAAEGGKALTFKKLARNFRKANL 854


>gi|24987642|pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
          Length = 257

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L +P  +       P  +L+VG  G GKT     L+K ++        
Sbjct: 19  EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT----LLAKAIAGEAKVPFF 74

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +  +A K A      +  ID  GR
Sbjct: 75  TISGS---------------DFVEMFVGVGASRVRDMFEQAKKAAPCIIF-IDEIDAVGR 118

Query: 205 LHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 119 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164


>gi|15239960|ref|NP_199187.1| disease resistance protein (CC-NBS-LRR class), putative
           [Arabidopsis thaliana]
 gi|30694357|ref|NP_851126.1| disease resistance protein (CC-NBS-LRR class), putative
           [Arabidopsis thaliana]
 gi|46395977|sp|Q9FG90|DRL33_ARATH RecName: Full=Probable disease resistance protein At5g43740
 gi|10177942|dbj|BAB11301.1| disease resistance protein [Arabidopsis thaliana]
 gi|15215704|gb|AAK91398.1| AT5g43740/MQD19_7 [Arabidopsis thaliana]
 gi|23308181|gb|AAN18060.1| At5g43740/MQD19_7 [Arabidopsis thaliana]
 gi|332007619|gb|AED95002.1| CC-NBS-LRR class disease resistance protein [Arabidopsis thaliana]
 gi|332007620|gb|AED95003.1| CC-NBS-LRR class disease resistance protein [Arabidopsis thaliana]
          Length = 862

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 17/83 (20%)

Query: 45  VREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDV-SELIHKMLMPLSKPF 103
           + EE+++LL + D  + VAQ+I+ ++  K     V + +++    S L++  +  L    
Sbjct: 120 MLEEVKELLSKKDFRM-VAQEIIHKVEKKLIQTTVGLDKLVEMAWSSLMNDEIGTLG--- 175

Query: 104 NWDFSHRPHVILVVGVNGVGKTT 126
                       + G+ GVGKTT
Sbjct: 176 ------------LYGMGGVGKTT 186


>gi|89098248|ref|ZP_01171133.1| hypothetical protein B14911_10817 [Bacillus sp. NRRL B-14911]
 gi|89087105|gb|EAR66221.1| hypothetical protein B14911_10817 [Bacillus sp. NRRL B-14911]
          Length = 494

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 33/148 (22%)

Query: 60  VAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV 119
             + ++ +E             +  L D  E I K ++ L++         P  I V G 
Sbjct: 170 FNLTEQFIEN------------RYFLTDHQEKIKKEILQLNRE------DGPCYISVEGS 211

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAA 179
            G GKT +I  ++K       KV               L I     +      +      
Sbjct: 212 AGTGKTLLIYDIAKHYIIDKDKV---------------LIIHCATLNEGHRKLKNDYSWD 256

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
               + F+     K DV++ D + RL+ 
Sbjct: 257 IYPIKGFESIDFSKYDVIVFDESQRLYQ 284


>gi|46136257|ref|XP_389820.1| hypothetical protein FG09644.1 [Gibberella zeae PH-1]
          Length = 291

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%)

Query: 83  RVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKV 142
             + D +E+    ++   K    +   RP VI + G+ G GK+T++  LSK +    +  
Sbjct: 4   HFVDDKTEICLPFILAQLKLHREESPDRPFVIGLNGIQGAGKSTLVKSLSKALESQNVPT 63

Query: 143 MLAAGDTFRSAAIDQL 158
           ++ + D F     DQ+
Sbjct: 64  LVCSIDEFYLTRQDQV 79


>gi|330840511|ref|XP_003292258.1| hypothetical protein DICPUDRAFT_82874 [Dictyostelium purpureum]
 gi|325077521|gb|EGC31228.1| hypothetical protein DICPUDRAFT_82874 [Dictyostelium purpureum]
          Length = 318

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 64/209 (30%), Gaps = 34/209 (16%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT-----------FRSAAIDQLKIW 161
           V++  G  GVGKTT    ++  +++ G K  +   D             R    D + + 
Sbjct: 49  VVVTSGKGGVGKTTTSASIAFGLAEKGFKTCVIDFDIGLRNLDIHFGMERRVIFDFINVI 108

Query: 162 A-------------DRTSADFVCSEIGSDAAALAYEAFKQAQA---KKVDVLIIDT-AG- 203
                            +   + +    D  AL  E  ++         D ++ D+ AG 
Sbjct: 109 NGDCTLKQALIKDRRNPNLSLLAASQTKDKTALKMEGVERVLEELKDNFDYIVCDSPAGI 168

Query: 204 RLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
              ++  +      +I     L        +  + A+  + AL            + LI 
Sbjct: 169 ESGSHHAMFWSDHAIIATNPELSSVRDSDKMLGIIASKSKRALE----NKEPVNVSLLIT 224

Query: 264 TKMDGTARGGGLIPIVV-THKIPVYFLGV 291
                    G ++ +      + +  LGV
Sbjct: 225 RYSPERVESGSMLSVKDIQENLGIRLLGV 253


>gi|323484112|ref|ZP_08089482.1| virulence-associated protein E [Clostridium symbiosum WAL-14163]
 gi|323402554|gb|EGA94882.1| virulence-associated protein E [Clostridium symbiosum WAL-14163]
          Length = 781

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 16/76 (21%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP----------------HVILV 116
           K Y   + V   +  V  L+   L      +      +                  V+++
Sbjct: 451 KEYLDGLPVWDGVKRVDTLLADYLGAEDSEYTRAVIRKTLAAAVARIYQPGAKFDSVLIL 510

Query: 117 VGVNGVGKTTVIGKLS 132
            G  G+GK+T+  KL+
Sbjct: 511 NGPQGIGKSTLFAKLA 526


>gi|322378609|ref|ZP_08053047.1| ABC transporter, ATP-binding protein [Helicobacter suis HS1]
 gi|322380099|ref|ZP_08054353.1| ATP-binding ABC transporter [Helicobacter suis HS5]
 gi|321147469|gb|EFX42115.1| ATP-binding ABC transporter [Helicobacter suis HS5]
 gi|321148969|gb|EFX43431.1| ABC transporter, ATP-binding protein [Helicobacter suis HS1]
          Length = 240

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 16/82 (19%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +++L  +  +K +   ++++DVS  +                    V+ ++G NG GKTT
Sbjct: 1   MDKLRAENLSKQIKKTKIVFDVSLEVE----------------SGQVVGLLGPNGAGKTT 44

Query: 127 VIGKLSKKMSDAGLKVMLAAGD 148
               +   +  +G KV L   D
Sbjct: 45  TFYMICGLLQPSGGKVYLNDQD 66


>gi|255513515|gb|EET89781.1| ATPase likely involved in chromosome partitioning [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 244

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT+   L+  +   G   +L  GDT   + + QL +    T      ++  S   A
Sbjct: 17  GVGKTTIAVNLAIALQFLGYNTLLVDGDTVNPSVVYQLDMLDADTGIYSCMAKKTSVEKA 76

Query: 181 LAYE 184
           +A  
Sbjct: 77  IAIH 80


>gi|284036093|ref|YP_003386023.1| LAO/AO transporter ATPase [Spirosoma linguale DSM 74]
 gi|283815386|gb|ADB37224.1| LAO/AO transport system ATPase [Spirosoma linguale DSM 74]
          Length = 329

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 70/190 (36%), Gaps = 30/190 (15%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             +++ ++L    K      +         GV GVGK+T I      ++  G  + +   
Sbjct: 40  AQQVLERILPNTGKSARIGIT---------GVPGVGKSTFIESFGTYLTSQGHTLAVLTV 90

Query: 148 D--TFRSAAI-----DQLKIWADRTSADFVCSEIGSDAAALAY---EAFKQAQAKKVDVL 197
           D  + RS         +++  +   +A    S  G     +A+   E     +A   D++
Sbjct: 91  DPTSQRSGGSLLGDKTRMETLSMNPNAYIRPSPAGDSLGGVAHRTRETMLLCEAAGFDII 150

Query: 198 IIDTAGRLHNNS-----------ILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
           +++T G   + +           +++AG G  ++ +KR       ++       T + A 
Sbjct: 151 LVETVGVGQSETVVHGMVDFFLLLMLAGAGDELQGMKRGIMELADALAITKADGTNEAAA 210

Query: 247 RQVEMFHAVA 256
            +  + +  A
Sbjct: 211 NRARVEYQNA 220


>gi|218528391|ref|YP_002419207.1| arginine/ornithine transporter ATPase [Methylobacterium
           chloromethanicum CM4]
 gi|218520694|gb|ACK81279.1| LAO/AO transport system ATPase [Methylobacterium chloromethanicum
           CM4]
          Length = 329

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 28/174 (16%)

Query: 47  EELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           + L + L+  D   A+A+ I   L   R A           V +LI  +L    +     
Sbjct: 9   DTLRERLLAGD-RAALARAIT--LAESRRA------DHRAAVRDLIDAVLPQTGRAIRVG 59

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAI-----DQLK 159
            +         GV GVGK+T I  L   ++ AG  V + A D  + R+         ++ 
Sbjct: 60  IT---------GVPGVGKSTTIDALGSLLTAAGHMVAVLAVDPSSTRTGGSILGDKTRMA 110

Query: 160 IWADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             A   +A    S        +A    E     +A   DV++++T G   + + 
Sbjct: 111 RLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA 164


>gi|218186044|gb|EEC68471.1| hypothetical protein OsI_36710 [Oryza sativa Indica Group]
          Length = 949

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 55/210 (26%), Gaps = 17/210 (8%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             +   KDVS    +    + +   L+   +        R   I +VG  G+GKTT + K
Sbjct: 161 RVRALYKDVSELIGVEQPRDELIDKLLDGEE----GSRQRLRTISIVGFGGLGKTT-LAK 215

Query: 131 LSKKMSDAGLKVMLAAGDTFR-SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            +            A     R    +   K              I        +E  K A
Sbjct: 216 -AVYDKIKVQFDCTAIVSVSRSPDVVKIFKQMLYELDRVKYLIIIDDIWDEKVWEFIKIA 274

Query: 190 QAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
                    + T  R  +           I    +         L      + ++     
Sbjct: 275 FPINHLGSRLITTTRKVSVCEACCSSTDDIVYRMKHLSDVDSQRLFCKRIFSHKDGCP-- 332

Query: 250 EMFHAVAGTTGLIMTKMDGTARGGGLIPIV 279
              H +   +  I+ K      GG  + I+
Sbjct: 333 ---HELQQVSRDILKKC-----GGVPLAII 354


>gi|254448887|ref|ZP_05062343.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
           proteobacterium HTCC5015]
 gi|198261577|gb|EDY85866.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [gamma
           proteobacterium HTCC5015]
          Length = 426

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           ++ +REEL++     D  +    +I + L      ++ + + +   V     +M    S 
Sbjct: 47  NEIIREELQEQSESGDTNLPTPHEIKQRLDDYVIGQERAKKVLSVAVYNHYKRM---ESS 103

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             N +       IL++G  G GKT +   +++ +
Sbjct: 104 QRNDEIELSKSNILLIGPTGSGKTLLAETMARLL 137


>gi|224531816|ref|ZP_03672448.1| ATP-dependent protease La [Borrelia valaisiana VS116]
 gi|224511281|gb|EEF81687.1| ATP-dependent protease La [Borrelia valaisiana VS116]
          Length = 806

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 14/127 (11%)

Query: 26  LKLKEGITDIISSRRLDDGVREELED-LLIRSDIGVAVA----QKIVEELLTKRYA---K 77
            KLK  +  +       + V +ELE   L+ +     +      +++ EL  +       
Sbjct: 283 EKLKTKLRALDLKGESLEVVEKELEKFSLLETSSAEYIVIRNYLELITELPWRNLKINFD 342

Query: 78  DVSVQRVLYDVSE------LIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            + +Q+    + +       +   ++          + +  +IL+VG  GVGKT++   +
Sbjct: 343 KLDLQKSKKILDKTHYGMTEVKDRIIEYISVLKLRKTQKGAIILLVGPPGVGKTSIGAAI 402

Query: 132 SKKMSDA 138
           +K +   
Sbjct: 403 AKVLRTK 409


>gi|121591823|ref|ZP_01679007.1| cell division protease FtsH [Vibrio cholerae 2740-80]
 gi|121546312|gb|EAX56593.1| cell division protease FtsH [Vibrio cholerae 2740-80]
          Length = 392

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 73  DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 126

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K +      +  ID 
Sbjct: 127 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKASPCIIF-IDEIDA 170

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 171 VGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 219


>gi|118474218|ref|YP_892493.1| putative cell division protein FtsH-like protein [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413444|gb|ABK81864.1| putative Cell division protein FtsH homolog [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 643

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G+  ++K+V     K    DV+      +  + I   L    +      +  P  +L+V
Sbjct: 154 LGMGSSKKLVNSERPKVKFNDVAGVEEAKEEVKEIVDFLKNPDRYIRLG-AKIPKGVLLV 212

Query: 118 GVNGVGKTTVIGK 130
           G  G GKT  + K
Sbjct: 213 GPPGTGKTL-LAK 224


>gi|21264203|ref|NP_644704.1| partition protein A [Xanthomonas axonopodis pv. citri str. 306]
 gi|21264247|ref|NP_644747.1| partition protein A [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110839|gb|AAM39222.1| partition protein A [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110883|gb|AAM39265.1| partition protein A [Xanthomonas axonopodis pv. citri str. 306]
          Length = 208

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  ++  G K +L  GD             A R    +  S   +  A 
Sbjct: 11  GVGKTTTAVHLAVMLARQG-KTLLIDGDPQ----ASAASWAAWRRETQYDPSPTTTCLAG 65

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVL 237
            A  A  +  A   + +++D  GR      +++L+A    +      LD  A   +L+V 
Sbjct: 66  KAILAEGKQLATGFEHVVVDAGGRDSVGLRSALLLAQSAVIPVGASNLDAAAMTDLLEV- 124

Query: 238 DATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
                   +     ++       +++T++D   +
Sbjct: 125 --------VELARDYNPELDV-RVLLTRVDPRTK 149


>gi|73970331|ref|XP_538592.2| PREDICTED: similar to interferon gamma inducible protein 47 [Canis
           familiaris]
          Length = 419

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 19/148 (12%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK---MSDA 138
           +  L DV+++I + L+           + P  + V+G +G GK++ I   + +     + 
Sbjct: 50  EAKLKDVADIIEESLVA--------AENAPLDVAVIGESGTGKSSFIN--ALRGLSYEEE 99

Query: 139 GLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLI 198
           G   +     T +                 F             +E  +  +    D  I
Sbjct: 100 GSASVGVVETTMKKTPY----QHPKYPKVTFWDLPGTGTPNFHPHEYLEMVEFATYDFFI 155

Query: 199 IDTAGRLHNNSILMAGIGKMIRVLKRLD 226
           I ++ R   N  L+A    +  + K+  
Sbjct: 156 IISSSRFSLNDALLAQN--IKEIGKKFY 181


>gi|15602303|ref|NP_245375.1| hypothetical protein PM0438 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720692|gb|AAK02522.1| FtsH [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 639

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 27/167 (16%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L  P  +       P  IL+VG  G GKT     L+K ++        
Sbjct: 157 EAKEEVGEIVDFLRDPGKFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 212

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QAKKVDVLIIDTAG 203
               +                  +       S    +  +A K A     +D   ID  G
Sbjct: 213 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCLIFIDE--IDAVG 255

Query: 204 RLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           R     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 256 RQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLD 302


>gi|154245563|ref|YP_001416521.1| ABC transporter related [Xanthobacter autotrophicus Py2]
 gi|154159648|gb|ABS66864.1| ABC transporter related [Xanthobacter autotrophicus Py2]
          Length = 616

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           R+D+ VA A KI+     +   K           ++ + K    L+   N   + +   I
Sbjct: 353 RADV-VAPATKIITGTPGEVVLK-----------AQNLVKRFGGLTATDNVSLTLKRGEI 400

Query: 115 L-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           L V+G NG GKTTV  +LS  ++     + +   D
Sbjct: 401 LGVIGPNGAGKTTVFAQLSGFLTPNAGTIEILGPD 435


>gi|71649766|ref|XP_813596.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878494|gb|EAN91745.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 303

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 16/115 (13%)

Query: 86  YDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA 145
             V+E I K L           S + + I++ G++G GK T + KL K +      V  +
Sbjct: 85  QQVTEEIMKYLP----------SKKGNAIVMQGLSGTGKGTTVNKLQKLL---PRCVTWS 131

Query: 146 AGDTFRSAAIDQLKIW-ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII 199
            G+ FRS     L+    +    + +  E+ +         F+Q +    D+++ 
Sbjct: 132 NGNVFRSYTYLSLEALKGEPIRTELLTPELLAAVEKQVT--FEQVENGGFDIVLK 184


>gi|67900518|ref|XP_680515.1| hypothetical protein AN7246.2 [Aspergillus nidulans FGSC A4]
 gi|40742103|gb|EAA61293.1| hypothetical protein AN7246.2 [Aspergillus nidulans FGSC A4]
 gi|259483410|tpe|CBF78777.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 2310

 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 19/125 (15%)

Query: 19   KGFASTS------LKLKEGITDIISSRRLDDGVREELEDLLIRSD-IGVAVAQKIVEELL 71
            +GF +         ++ E     ++  R +    ++L  LL + D IG   +      L 
Sbjct: 1499 EGFGNARTVENVLDRILERQAKRLAEERRNQTFSDDL--LLTKEDLIGPEPS----NALR 1552

Query: 72   TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI-----LVVGVNGVGKTT 126
                 K +     L  V   +  +L  +   +  + + +P V      + +G  G GKTT
Sbjct: 1553 NCSAWKKLQSMIGLTSVKATVKALLDSMQSNYERELNEKPLVEFTLNRVFLGSPGTGKTT 1612

Query: 127  VIGKL 131
             + KL
Sbjct: 1613 -VAKL 1616


>gi|322514012|ref|ZP_08067086.1| Mrp ATPase family protein [Actinobacillus ureae ATCC 25976]
 gi|322120162|gb|EFX92123.1| Mrp ATPase family protein [Actinobacillus ureae ATCC 25976]
          Length = 365

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 11/113 (9%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV--GVNGVGKTTVIG 129
           T+   K V+      +V  +++  +  L +  N    +    I+ V  G  GVGK+T   
Sbjct: 65  TEAKLKQVTGAN---EVKWILNYQIATLKRANNHPAVNGVKNIIAVTSGKGGVGKSTTSV 121

Query: 130 KLSKKMSDAGLKVMLAAGDTFRS------AAIDQLKIWADRTSADFVCSEIGS 176
            L+  +   G KV +   D +         A DQ     D      +      
Sbjct: 122 NLALALKAQGAKVGILDADIYGPSIPHMLGAQDQRPTSPDNKHITPIEVYGIQ 174


>gi|307297785|ref|ZP_07577591.1| ATPase-like, ParA/MinD [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306917045|gb|EFN47427.1| ATPase-like, ParA/MinD [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 269

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 94  KMLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
           K +    +    +     + IL + G  GVGKTTV   L+  ++D G K  L   D    
Sbjct: 4   KEMAERMETIRDNVKSIKNKILVMSGKGGVGKTTVAVNLALALADEGFKTGLMDIDLHGP 63

Query: 153 --AAIDQLKIWADRTSADFVCSEIGSDAAAL 181
             A +  LK   +         E   +   +
Sbjct: 64  NVARMVGLKKQPEVVEGQIFPPEALPNLKVI 94


>gi|301170081|emb|CBW29685.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae 10810]
          Length = 635

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 147 KVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 201

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 202 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 246

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 247 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 303


>gi|283455097|ref|YP_003359661.1| ABC transporter permease [Bifidobacterium dentium Bd1]
 gi|309802318|ref|ZP_07696425.1| ABC transporter, ATP-binding protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|283101731|gb|ADB08837.1| ABC-type transporter, permease component [Bifidobacterium dentium
           Bd1]
 gi|308220918|gb|EFO77223.1| ABC transporter, ATP-binding protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 612

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 24/167 (14%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSAAIDQLKIWADRT----- 165
           + +VG  G GKTT++  L +    +G  + +   DT    R    DQ  +    T     
Sbjct: 402 VAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRG 461

Query: 166 ----SADFVCSEIGSDAAALAYEAFKQAQA-----KKVDVLIIDTAGRLHNNSILMAGIG 216
               +  +    +  +    A +A              D ++ D A        L  G  
Sbjct: 462 TVRENIAYSKKGVTDEQIVAACKAVGLHHYIMSLPDGYDTILDDKA-------SLSQGQK 514

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           +++ + + +   AP  +L    ++        ++             
Sbjct: 515 QLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSF 561


>gi|253578855|ref|ZP_04856126.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849798|gb|EES77757.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 518

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  + +++  +L+     PLS+P       R + I +VG NG+GKTT
Sbjct: 320 TPGKYIFETKDLVIGYNEPLSRPVTLSME-RGNKIALVGANGIGKTT 365


>gi|241765909|ref|ZP_04763840.1| arsenite-activated ATPase ArsA [Acidovorax delafieldii 2AN]
 gi|241364159|gb|EER59364.1| arsenite-activated ATPase ArsA [Acidovorax delafieldii 2AN]
          Length = 585

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I+V+G  GVGKTT+   ++  +   G  V L+  D    AA   + + AD         +
Sbjct: 331 IMVMGKGGVGKTTIAAAIALGLVRHGKSVHLSTTD---PAAHLAVTLNADIPGLSVGRID 387

Query: 174 IGSDAAALAYEAFKQAQA 191
              +      +      A
Sbjct: 388 PKVETQKYVDKIVASRAA 405


>gi|238790225|ref|ZP_04634000.1| hypothetical protein yfred0001_31600 [Yersinia frederiksenii ATCC
           33641]
 gi|238721668|gb|EEQ13333.1| hypothetical protein yfred0001_31600 [Yersinia frederiksenii ATCC
           33641]
          Length = 898

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 94/260 (36%), Gaps = 56/260 (21%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDL-----LIRSDIGVAVAQKIVEE------- 69
            + + +L E   DI     ++  ++++L +L     L+  D+ V     ++ +       
Sbjct: 524 KNLTQQLLETRHDISRQAEIN-ALQQQLSELQGSTPLLSLDVDVRTVATVIADWTGVPLG 582

Query: 70  ----------------LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
                           L T+   +D +    L D+++ +      L+       +    V
Sbjct: 583 SLLKDEQTNLLSLENHLATRVVGQDAA----LKDMAQRLRAAKTGLTAD-----NGPLGV 633

Query: 114 ILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVC 171
            L+VG +GVGKT T +  L+  +      ++      ++ A  + QLK            
Sbjct: 634 FLLVGPSGVGKTETALA-LADTLFGGEKSLITINLSEYQEAHTVSQLKGSP--------P 684

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPH 228
             +G     +  EA    + +   V+++D   + H + +           +R  +  +  
Sbjct: 685 GYVGYGQGGILTEAV---RKRPYSVVLLDEVEKAHRDVLNVFYQVFDRGFMRDGEGREID 741

Query: 229 APHSVLQVLDATTGQNALRQ 248
             ++V+  + A  G + + Q
Sbjct: 742 FRNTVIL-MTANLGSDHIMQ 760


>gi|229844056|ref|ZP_04464197.1| hypothetical protein CGSHi6P18H1_06451 [Haemophilus influenzae
           6P18H1]
 gi|229813050|gb|EEP48738.1| hypothetical protein CGSHi6P18H1_06451 [Haemophilus influenzae
           6P18H1]
          Length = 635

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 147 KVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 201

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 202 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 246

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 247 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 303


>gi|145632765|ref|ZP_01788498.1| hypothetical protein CGSHi3655_08671 [Haemophilus influenzae 3655]
 gi|144986421|gb|EDJ92987.1| hypothetical protein CGSHi3655_08671 [Haemophilus influenzae 3655]
          Length = 638

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 150 KVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 204

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 205 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 249

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 250 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 306


>gi|154333984|ref|XP_001563247.1| XPA-interacting protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134060259|emb|CAM45668.1| putative XPA-interacting protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 303

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           P VILVVG+ G GKTT++ ++        ++      D
Sbjct: 2   PVVILVVGMAGTGKTTLVHRMQHYAHANSIRSYFINLD 39


>gi|71734727|ref|YP_275064.1| ABC transporter ATP-binding/permease [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555280|gb|AAZ34491.1| ABC transporter, ATP-binding/permease protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 586

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 15/142 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKI---- 160
           + +VG NG GKTT+I  L++       +++L   D           R   I Q  I    
Sbjct: 369 VALVGENGSGKTTLIKLLTRLYQPDQGRILLDGSDLQDWDEDALRSRIGVIFQDFIRYQF 428

Query: 161 -WADRTSA-DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
              +     D       +     A +       +++D       GR       ++G    
Sbjct: 429 LVGENLGVGDTHAFHDETRWREAAAQGMAAQFIEQLDKGYATQLGRWFAGGQELSGGQWQ 488

Query: 219 IRVLKRLDPHAPHSVLQVLDAT 240
              L R        +L + + T
Sbjct: 489 KIALSRAYMRRDADILILDEPT 510


>gi|27378159|ref|NP_769688.1| arginine/ornithine transport system ATPase [Bradyrhizobium
           japonicum USDA 110]
 gi|27351306|dbj|BAC48313.1| bll3048 [Bradyrhizobium japonicum USDA 110]
          Length = 329

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 19/145 (13%)

Query: 88  VSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
             EL+  +L    K F    +  P         GVGK+T I  L   + + G KV + A 
Sbjct: 43  ARELVQMLLPDTGKAFRVGITGSP---------GVGKSTTIDALGTYLIEQGHKVAVLAV 93

Query: 148 DTFRS---AAIDQLKIWADRTSA-------DFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
           D   +    +I   K    R SA           S      AA   EA    +A    V+
Sbjct: 94  DPSSARSGGSILGDKTRMARLSASDDAFIRPSPSSGTLGGVAAKTREAMLLCEAAGFGVV 153

Query: 198 IIDTAGRLHNNSILMAGIGKMIRVL 222
           +++T G   + + +       + ++
Sbjct: 154 LVETVGIGQSETAVCDMTDFFLALM 178


>gi|16273245|ref|NP_439486.1| cell division protein [Haemophilus influenzae Rd KW20]
 gi|2492507|sp|P71377|FTSH_HAEIN RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|1574793|gb|AAC22979.1| cell division protein (ftsH) [Haemophilus influenzae Rd KW20]
          Length = 635

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 147 KVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 201

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 202 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 246

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 247 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 303


>gi|68250004|ref|YP_249116.1| cell division protein FtsH-like protein [Haemophilus influenzae
           86-028NP]
 gi|145630773|ref|ZP_01786551.1| RNA polymerase sigma factor [Haemophilus influenzae R3021]
 gi|145634956|ref|ZP_01790663.1| hypothetical protein CGSHiAA_08003 [Haemophilus influenzae PittAA]
 gi|145638915|ref|ZP_01794523.1| hypothetical protein CGSHiII_01975 [Haemophilus influenzae PittII]
 gi|68058203|gb|AAX88456.1| cell division protein FtsH homolog 1 [Haemophilus influenzae
           86-028NP]
 gi|144983655|gb|EDJ91115.1| RNA polymerase sigma factor [Haemophilus influenzae R3021]
 gi|145267822|gb|EDK07819.1| hypothetical protein CGSHiAA_08003 [Haemophilus influenzae PittAA]
 gi|145271887|gb|EDK11796.1| hypothetical protein CGSHiII_01975 [Haemophilus influenzae PittII]
 gi|309750888|gb|ADO80872.1| ATP-dependent protease FtsH [Haemophilus influenzae R2866]
          Length = 635

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 147 KVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 201

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 202 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 246

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 247 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 303


>gi|330837479|ref|YP_004412120.1| Xenobiotic-transporting ATPase [Spirochaeta coccoides DSM 17374]
 gi|329749382|gb|AEC02738.1| Xenobiotic-transporting ATPase [Spirochaeta coccoides DSM 17374]
          Length = 596

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS----KPFNWDFSHRPH---VILV 116
           ++I E +      +D    R L  V   +    +  S    +P   D S        I V
Sbjct: 323 ERIFETINEPVLIEDAPHARPLPPVKGKVDFTHVSFSYDASRPILTDVSFSVSPGESIAV 382

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           VG  G GKTT++  +S+  +     + +   D
Sbjct: 383 VGPTGAGKTTILSLISRFYNVQEGSICIDGHD 414


>gi|321458492|gb|EFX69559.1| hypothetical protein DAPPUDRAFT_202764 [Daphnia pulex]
          Length = 697

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 64/184 (34%), Gaps = 23/184 (12%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTT 126
           E+  +         + + +  + + +++  L  P  +       P  +L+VG  G GKT 
Sbjct: 247 EVAPEEINVTFDDVKGVEEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLLVGPPGTGKT- 305

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
               L++ ++             F +A  +  +I         V                
Sbjct: 306 ---LLARAVAGEAGVPY------FHAAGPEFDEIL--------VGQGARRVRDLFKAAKM 348

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILM-AGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           +      +D   ID+ G   ++S+L       + ++L  +D    +  + VL AT  ++ 
Sbjct: 349 RAPCVIFIDE--IDSVGAKRSSSVLHPYANQTINQLLAEMDGFHQNEGVIVLGATNRRDD 406

Query: 246 LRQV 249
           L + 
Sbjct: 407 LDKA 410


>gi|311694155|gb|ADP97028.1| type IV-A pilus assembly ATPase PilB [marine bacterium HP15]
          Length = 596

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 97  MPLSKPFNWDFSHRPHVILVV-GVNGVGKTTVI 128
               +    + + RPH I++V G  G GKTT +
Sbjct: 330 GKEDRQRWQEITSRPHGIVLVTGPTGSGKTTTL 362


>gi|296110154|ref|YP_003620535.1| hypothetical protein LKI_00115 [Leuconostoc kimchii IMSNU 11154]
 gi|295831685|gb|ADG39566.1| hypothetical protein LKI_00115 [Leuconostoc kimchii IMSNU 11154]
          Length = 632

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 77/214 (35%), Gaps = 26/214 (12%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            L ++   +D ++++V           +   ++      + +P   L +G  GVGKT   
Sbjct: 294 RLKSQVIGQDTALEKV----------AMKLTNREAGLADTSKPESFLFMGPTGVGKTETA 343

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
            +L+  +       +      F+ A           TS +    ++ +      Y     
Sbjct: 344 KQLALNLFGNAQNFIRFDMSEFKFAG----------TSLERFKDQLTTRVRHTPYAVLLL 393

Query: 189 AQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV-LQVLDATTGQNALR 247
            + +K D  ++D   ++ ++  L    G++I     +     +S    V++     +A++
Sbjct: 394 DEIEKADPEVMDLLLQVLDDGRLSDEYGRVINFKDLIVVMTTNSGATAVMNRDAKSDAVK 453

Query: 248 QVEMFHAVAGTTGLIMTKMDGT-----ARGGGLI 276
           + +   A       I  + DG      AR G +I
Sbjct: 454 EDKKRQANFEEQLEIALQSDGYRPEFIARIGAII 487


>gi|260773193|ref|ZP_05882109.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           metschnikovii CIP 69.14]
 gi|260612332|gb|EEX37535.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           metschnikovii CIP 69.14]
          Length = 426

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 42  DDGVREELEDLLIRSDI-GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLS 100
           +D +REE++D+L + +   +   ++I E L      ++ + + +   V     ++    +
Sbjct: 46  NDIIREEIKDVLPKKESSALPTPREIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDT 105

Query: 101 KPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                +       IL++G  G GKT +   L++ +
Sbjct: 106 TSDGVELGKSN--ILLIGPTGSGKTLLAETLARFL 138


>gi|257464227|ref|ZP_05628606.1| nucleotide-binding protein [Fusobacterium sp. D12]
 gi|317061747|ref|ZP_07926232.1| nucleotide-binding protein [Fusobacterium sp. D12]
 gi|313687423|gb|EFS24258.1| nucleotide-binding protein [Fusobacterium sp. D12]
          Length = 274

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 106 DFSHRPHVI-LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             +    VI ++ G  GVGK+TV   L+K++   G KV +  GD
Sbjct: 28  PLNQIKKVIGVMSGKGGVGKSTVTVLLAKELQTRGYKVGILDGD 71


>gi|229546325|ref|ZP_04435050.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Enterococcus
           faecalis TX1322]
 gi|229308556|gb|EEN74543.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Enterococcus
           faecalis TX1322]
 gi|315030763|gb|EFT42695.1| ATPase family protein [Enterococcus faecalis TX4000]
          Length = 704

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 11/134 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           + K    T  K+KE       +  +DD     E L  + + SD+G    +++ + L  + 
Sbjct: 360 IKKSIEETKKKIKETDQKEKITATIDDVAQSVERLTGIPV-SDMGANDIERL-KNLDKRL 417

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            +K +     +  V++ I +     S+      +      L VG  GVGKT +  +L+  
Sbjct: 418 KSKVIGQDEAVEMVAKAIRRNRAGFSEG-----NQPIGSFLFVGPTGVGKTELAKQLA-- 470

Query: 135 MSDAGLKVMLAAGD 148
           +   G +  +   D
Sbjct: 471 LDMFGNENAIIRLD 484


>gi|227537369|ref|ZP_03967418.1| possible Adenylyl-sulfate kinase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242747|gb|EEI92762.1| possible Adenylyl-sulfate kinase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 185

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA-----AIDQLKIWADRTSA 167
           +I + G++G GKTT+   L   + +   +V L  GDT+R+        D+     +    
Sbjct: 4   IIQMTGLSGSGKTTLSKMLKTTLEEESYRVALVDGDTYRATLCKDLGFDKADRIENIRRL 63

Query: 168 DFVCSEIGSDAAALAYEAFKQAQA 191
             V +E+  +   +   A    + 
Sbjct: 64  GVVAAELSKEHDIVIIAAINPYEE 87


>gi|114462373|gb|ABI75115.1| adenylylsulfate kinase [Cylindrospermopsis raciborskii T3]
          Length = 200

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
               H+  ++   G++G GKTT+  KL + + + G    +  GD+ R  
Sbjct: 20  LKNGHKSGILWFTGLSGAGKTTLALKLEQTLFEKGWSTFVLDGDSVRHG 68


>gi|154149469|ref|YP_001406077.1| putative cell division protease FtsH-like protein [Campylobacter
           hominis ATCC BAA-381]
 gi|153805478|gb|ABS52485.1| putative Cell division protease FtsH-like protein [Campylobacter
           hominis ATCC BAA-381]
          Length = 643

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G+  ++K+V     K    DV+      +  + I   L    +  N   +  P  +L+V
Sbjct: 158 LGIGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKNPGRYINLG-AKIPKGVLLV 216

Query: 118 GVNGVGKTTVIGK 130
           G  G GKT  + K
Sbjct: 217 GPPGTGKTL-LAK 228


>gi|145636178|ref|ZP_01791848.1| hypothetical protein CGSHiHH_09525 [Haemophilus influenzae PittHH]
 gi|145270700|gb|EDK10633.1| hypothetical protein CGSHiHH_09525 [Haemophilus influenzae PittHH]
          Length = 550

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 62  KVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 116

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 117 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 161

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 162 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 218


>gi|145629420|ref|ZP_01785218.1| hypothetical protein CGSHi22121_08373 [Haemophilus influenzae
           22.1-21]
 gi|144978263|gb|EDJ88027.1| hypothetical protein CGSHi22121_08373 [Haemophilus influenzae
           22.1-21]
          Length = 638

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 150 KVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 204

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 205 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 249

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 250 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 306


>gi|15966726|ref|NP_387079.1| ABC transporter ATP-binding protein [Sinorhizobium meliloti 1021]
 gi|15075998|emb|CAC47552.1| Putative methionine ABC transporter, ATP-binding component
           [Sinorhizobium meliloti 1021]
          Length = 262

 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           V  ++G NG GKTTV   L+K +      + L   D  R+A 
Sbjct: 43  VHALIGPNGAGKTTVFNLLTKFLQPTHGTITLLGEDITRTAP 84


>gi|329735442|gb|EGG71731.1| ABC transporter, ATP-binding protein [Staphylococcus epidermidis
           VCU028]
          Length = 644

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHV---ILVVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAG 147
           IH + +    P     +        I ++G NGVGKTT+I  ++ K+    G  +  A  
Sbjct: 333 IHDLKIGYDSPITLPINLEVFKGDHIAIIGPNGVGKTTLIKTIAEKQNKLGGQIIFGANL 392

Query: 148 DTFRSAAIDQLKIW--ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRL 205
              +    DQ +    +++T  D+V  +              +    + DV  I      
Sbjct: 393 ---QIGYYDQKQAEFKSNKTILDYVWDQYPHMNEKDVRAVLGRFLFVQEDVKKIINDLSG 449

Query: 206 HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTG-----QNALRQVEMFHA 254
              + L   +  + R           +VL + + T       +  L Q      
Sbjct: 450 GEKARLQLALLMLQR----------DNVLILDEPTNHLDIDSKEMLEQALKDFE 493


>gi|329941341|ref|ZP_08290620.1| ABC transporter ATP-binding protein [Streptomyces griseoaurantiacus
           M045]
 gi|329299872|gb|EGG43771.1| ABC transporter ATP-binding protein [Streptomyces griseoaurantiacus
           M045]
          Length = 266

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR-SAAI 155
           +VG NG GKTT +  ++  +      V +A  D +R  AA+
Sbjct: 45  LVGPNGAGKTTTLSMITGLLRPDQGTVEIAGHDVWRDPAAV 85


>gi|315658457|ref|ZP_07911329.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           lugdunensis M23590]
 gi|315496786|gb|EFU85109.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           lugdunensis M23590]
          Length = 467

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 59  GVAVA-QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           G+ +  + IV +L      +D + ++V   +     + L+             P  IL++
Sbjct: 5   GIKLTPKDIVSQLNEYIVGQDDAKRKVAIALRNRYRRSLLDEETKQEIA----PKNILMI 60

Query: 118 GVNGVGKT 125
           G  GVGKT
Sbjct: 61  GPTGVGKT 68


>gi|297529486|ref|YP_003670761.1| cobalamin synthesis protein P47K [Geobacillus sp. C56-T3]
 gi|297252738|gb|ADI26184.1| cobalamin synthesis protein P47K [Geobacillus sp. C56-T3]
          Length = 371

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           +L+ G  G GKTT + + +KK+   G +V +   D
Sbjct: 6   VLLGGFLGAGKTTTLIQTAKKLQKRGKRVAVVTND 40


>gi|289550955|ref|YP_003471859.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180487|gb|ADC87732.1| ATP-dependent hsl protease ATP-binding subunit HslU [Staphylococcus
           lugdunensis HKU09-01]
          Length = 467

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 59  GVAVA-QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           G+ +  + IV +L      +D + ++V   +     + L+             P  IL++
Sbjct: 5   GIKLTPKDIVSQLNEYIVGQDDAKRKVAIALRNRYRRSLLDEETKQEIA----PKNILMI 60

Query: 118 GVNGVGKT 125
           G  GVGKT
Sbjct: 61  GPTGVGKT 68


>gi|284504342|ref|YP_003407057.1| P-loop ATPase/GTPase [Marseillevirus]
 gi|282935780|gb|ADB04095.1| P-loop ATPase/GTPase [Marseillevirus]
          Length = 211

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 14/114 (12%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA 167
           S +  V+ + G  G GKTT   KL K + + G             A  ++L         
Sbjct: 3   SDKHIVVHLRGAIGSGKTTYANKLKKFVEENGGSCF--------IAGTNELCGQGKT--- 51

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                +  S          +     + +VL++DT G   + ++    +     V
Sbjct: 52  ---PQQASSIVEEQILCWLEDIVPDQKNVLVVDTCGEKKHQTVFGVDMSSWKSV 102


>gi|240851487|ref|ZP_04752238.1| Mrp-like protein, ATP-binding protein [Actinobacillus minor 202]
 gi|240310005|gb|EER48297.1| Mrp-like protein, ATP-binding protein [Actinobacillus minor 202]
          Length = 365

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 11/116 (9%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV--GVNGVGKTT 126
           +  T+   K+++    +  V   ++  +  L +  N    +    I+ V  G  GVGK+T
Sbjct: 62  KATTEEKLKEITAASGVKWV---LNYNIATLKRANNHPAVNGVKNIIAVTSGKGGVGKST 118

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRS------AAIDQLKIWADRTSADFVCSEIGS 176
               L+  +   G +V +   D +         A DQ     D      V      
Sbjct: 119 TSVNLALALKAQGARVGILDADIYGPSIPHMLGAKDQRPTSPDNKHITPVEVYGIQ 174


>gi|255971055|ref|ZP_05421641.1| ATP-dependent Clp protease [Enterococcus faecalis T1]
 gi|256617421|ref|ZP_05474267.1| ATP-dependent Clp protease [Enterococcus faecalis ATCC 4200]
 gi|257420779|ref|ZP_05597769.1| ATP-dependent Clp protease [Enterococcus faecalis X98]
 gi|300861389|ref|ZP_07107474.1| putative chaperone protein ClpB [Enterococcus faecalis TUSoD Ef11]
 gi|307291511|ref|ZP_07571392.1| ATPase family [Enterococcus faecalis TX0411]
 gi|255962073|gb|EET94549.1| ATP-dependent Clp protease [Enterococcus faecalis T1]
 gi|256596948|gb|EEU16124.1| ATP-dependent Clp protease [Enterococcus faecalis ATCC 4200]
 gi|257162603|gb|EEU92563.1| ATP-dependent Clp protease [Enterococcus faecalis X98]
 gi|295114143|emb|CBL32780.1| ATPases with chaperone activity, ATP-binding subunit [Enterococcus
           sp. 7L76]
 gi|300849149|gb|EFK76901.1| putative chaperone protein ClpB [Enterococcus faecalis TUSoD Ef11]
 gi|306497433|gb|EFM66969.1| ATPase family [Enterococcus faecalis TX0411]
 gi|315144105|gb|EFT88121.1| ATPase family protein [Enterococcus faecalis TX2141]
 gi|315156615|gb|EFU00632.1| ATPase family protein [Enterococcus faecalis TX0043]
 gi|315159693|gb|EFU03710.1| ATPase family protein [Enterococcus faecalis TX0312]
 gi|323479659|gb|ADX79098.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Enterococcus
           faecalis 62]
          Length = 704

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 11/134 (8%)

Query: 17  LTKGFASTSLKLKEGITDIISSRRLDD--GVREELEDLLIRSDIGVAVAQKIVEELLTKR 74
           + K    T  K+KE       +  +DD     E L  + + SD+G    +++ + L  + 
Sbjct: 360 IKKSIEETKKKIKETDQKEKITATIDDVAQSVERLTGIPV-SDMGANDIERL-KNLDKRL 417

Query: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK 134
            +K +     +  V++ I +     S+      +      L VG  GVGKT +  +L+  
Sbjct: 418 KSKVIGQDEAVEMVAKAIRRNRAGFSEG-----NQPIGSFLFVGPTGVGKTELAKQLA-- 470

Query: 135 MSDAGLKVMLAAGD 148
           +   G +  +   D
Sbjct: 471 LDMFGNENAIIRLD 484


>gi|255540273|ref|XP_002511201.1| ATP binding protein, putative [Ricinus communis]
 gi|223550316|gb|EEF51803.1| ATP binding protein, putative [Ricinus communis]
          Length = 1240

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 91/286 (31%), Gaps = 68/286 (23%)

Query: 6    VASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIR-----SDIGV 60
            ++SESL +  ++ +   + S  LK+ + D+++          E E  L+      SDIGV
Sbjct: 884  LSSESLQYGIEILQAIQNESKSLKKSLKDVVTEN--------EFEKRLLADVIPPSDIGV 935

Query: 61   AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPF---NWDFSHRPHVILVV 117
                             D+     + D  + +  +++PL +P        +     IL+ 
Sbjct: 936  --------------TFDDIGALENVKDTLKEL--VMLPLQRPELFCKGQLTKPCKGILLF 979

Query: 118  GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
            G  G GKT     L+K ++                A  + + I     ++ +        
Sbjct: 980  GPPGTGKTM----LAKAVATE--------------AGANFINISMSSITSKWFGEGEKYV 1021

Query: 178  AAALAYEAFKQAQAKKVDVLIIDTA-GRLHNNSILMAGIGKMIRVLKRLDPHAPHSV--L 234
             A  +  +        VD +  D+  GR  N     A        +   D         +
Sbjct: 1022 KAVFSLASKIAPSVVFVDEV--DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERV 1079

Query: 235  QVLDATTGQNALRQVEMFH-------------AVAGTTGLIMTKMD 267
             VL AT     L +  +                 A    +I+ K D
Sbjct: 1080 LVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILRVILAKED 1125


>gi|212712401|ref|ZP_03320529.1| hypothetical protein PROVALCAL_03489 [Providencia alcalifaciens DSM
           30120]
 gi|212685147|gb|EEB44675.1| hypothetical protein PROVALCAL_03489 [Providencia alcalifaciens DSM
           30120]
          Length = 887

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 102/288 (35%), Gaps = 55/288 (19%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKL---KEGITDIISSRRLDDGV---REELE----- 50
           +NQ + SE ++   +L    A    +    K  I++++  RR    V   + +LE     
Sbjct: 480 TNQSLLSELVTQDAQLALQMAELEQRFEQEKNLISELLEQRRQSQDVSNIQSQLELVQQN 539

Query: 51  DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM--------------L 96
           + LI  D+ V     ++ +         V +  +L D    + ++              L
Sbjct: 540 EPLITPDVDVRTVATVIADWT------GVPLSSLLKDEQTELLELEDSLGKRVVGQESPL 593

Query: 97  MPLSKPFNW------DFSHRPHVILVVGVNGVGKT-TVIGKLSKKMSDAGLKVMLAAGDT 149
           + L +            +    V L+VG +G+GKT T +  L+  +      ++      
Sbjct: 594 LGLGQRLRAARTGLASENGPQGVFLLVGPSGIGKTETALA-LADVLFGGEKSLITINMSE 652

Query: 150 FRSA-AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
           ++ A  + QLK              +G     +  EA    + +   V+++D   + H +
Sbjct: 653 YQEAHTVSQLKGSP--------PGYVGYGQGGILTEAV---RKRPYSVVLLDEVEKAHRD 701

Query: 209 S-ILMAG--IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
              L         +R  +  +    ++V+  + A  G + L Q     
Sbjct: 702 VLNLFYQVFDRGFMRDGEGREIDFRNTVIL-MTANLGSDLLMQQLEEF 748


>gi|315231120|ref|YP_004071556.1| carbon monoxide dehydrogenase accessory CooC-like protein
           [Thermococcus barophilus MP]
 gi|315184148|gb|ADT84333.1| carbon monoxide dehydrogenase accessory CooC-like protein
           [Thermococcus barophilus MP]
          Length = 245

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD-----TFRSAAIDQLKIWADRTS 166
           IL+ G  G GK+T+   L K +++ G +V++   D      +R   + + K  A+   
Sbjct: 3   ILICGKGGCGKSTITAMLGKYLANKGHRVLIVDADESNPGLYRMLGLSKTKTLAEYLG 60


>gi|167648530|ref|YP_001686193.1| DNA polymerase III subunits gamma and tau [Caulobacter sp. K31]
 gi|167350960|gb|ABZ73695.1| DNA polymerase III, subunits gamma and tau [Caulobacter sp. K31]
          Length = 632

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 29/99 (29%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           H  ++ GV GVGKTT    L++ ++           DT    ++D L I      A    
Sbjct: 119 HAFMLTGVRGVGKTTTARLLARALNYE--------TDTVHQPSVD-LTIDGRHCKAII-- 167

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
                             + + +DVL +D A R   + +
Sbjct: 168 ------------------EGRHMDVLELDAASRTKVDEM 188


>gi|119720654|ref|YP_921149.1| ABC transporter related [Thermofilum pendens Hrk 5]
 gi|119525774|gb|ABL79146.1| ABC transporter related [Thermofilum pendens Hrk 5]
          Length = 302

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 116 VVGVNGVGKTTVIGKLS-KKMSDAGLKVMLAAGD 148
           +VG NG GKTT I KL+   +  +G +V +   D
Sbjct: 32  LVGPNGSGKTTTI-KLAVGLLKKSGGEVRVLGLD 64


>gi|2852684|gb|AAC02202.1| resistance protein candidate [Lactuca sativa]
 gi|219563669|gb|ACL28164.1| NBS-LRR resistance-like protein RGC1A [Lactuca sativa]
          Length = 775

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 8/56 (14%)

Query: 85  LYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           + D ++L+ K+L    +  + +FS  P    +VG+ GVGKTT    L++ + D   
Sbjct: 170 VDDKNKLLEKLLGDRDESGSQNFSIVP----IVGMGGVGKTT----LARLLYDEKK 217


>gi|326423986|ref|NP_761191.3| ATP-dependent helicase HrpA [Vibrio vulnificus CMCP6]
 gi|27361811|gb|AAO10718.1| ATP-dependent helicase HrpA [Vibrio vulnificus CMCP6]
          Length = 1310

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 78/222 (35%), Gaps = 43/222 (19%)

Query: 2   SNQKVASESLSWIRK-LTKGFASTSLKLKEGIT--DIISSRRLDDGVREELEDLLIRSDI 58
           S QK  + S + +RK L++       +L + I     I+     + V +E+         
Sbjct: 13  SEQKAQANSAASLRKALSQCLIKDRFRLSKRIAGASKINKESARNAVFDEI--------- 63

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH--VILV 116
            + +A+ ++E             QR  Y       ++L P+S+  +       H  V++V
Sbjct: 64  ALDIAKSMME-----------VEQRSRYQPKIEYPEIL-PVSQKKDDIADAIAHHQVVIV 111

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------S 166
            G  G GKTT + K+  ++   G   ++      R AA       A+             
Sbjct: 112 AGETGSGKTTQLPKICAEL-GRGKFGLIGHTQPRRLAARSVANRIAEEMETQLGDFVGYK 170

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTA 202
             F      +    L  +    A+ +        D +IID A
Sbjct: 171 VRFNDQISENTQIKLMTDGILLAEIQHDRFLNQYDTIIIDEA 212


>gi|30249194|ref|NP_841264.1| ATPase component ABC-type multidrug transport system [Nitrosomonas
           europaea ATCC 19718]
 gi|30180513|emb|CAD85120.1| ATPase component ABC-type multidrug transport system [Nitrosomonas
           europaea ATCC 19718]
          Length = 590

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           H+  +  ++G NG GK+T    L   +   G +  +   D  R+  I
Sbjct: 364 HKGEIFGLLGPNGAGKSTTFKMLCGLLKPTGGEAHVVGLDLRRAPGI 410


>gi|146279143|ref|YP_001169302.1| arginine/ornithine transport system ATPase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145557384|gb|ABP71997.1| LAO/AO transport system ATPase [Rhodobacter sphaeroides ATCC 17025]
          Length = 323

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 19/165 (11%)

Query: 55  RSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
            +D+   +A      L       +            L+ ++     +      S  P   
Sbjct: 3   TADLAPRIASGDRRALARAITLVESQRADHRTQALALLGQLAGTGREALRIGLSGTP--- 59

Query: 115 LVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRSAAI-----DQLKIWADRTSA 167
                 GVGK+T I      ++  GL+V + A D  + RS         +++  +    A
Sbjct: 60  ------GVGKSTFIESFGLMLTGQGLRVAVLAVDPSSSRSGGSILGDKTRMERLSRDPMA 113

Query: 168 DFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNS 209
               S   S    +A    EA    +A   DV++I+T G   + +
Sbjct: 114 FIRPSPSQSHLGGVARRTREAVALCEAAGFDVILIETVGVGQSET 158


>gi|323136468|ref|ZP_08071550.1| ATPase-like, ParA/MinD [Methylocystis sp. ATCC 49242]
 gi|322398542|gb|EFY01062.1| ATPase-like, ParA/MinD [Methylocystis sp. ATCC 49242]
          Length = 374

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 98  PLSKPFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           P  K           +I V  G  GVGK+T    L+  ++  G +V L   D +
Sbjct: 103 PPRKGLAPALEKIRFIIAVASGKGGVGKSTTSANLALGLAAQGWRVGLLDADIY 156


>gi|319399970|gb|EFV88212.1| arsenite-activated ATPase family protein [Staphylococcus
           epidermidis FRI909]
          Length = 576

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + I +     +K  +   + +   +  +G  GVGKTTV  +L+  +S+ G +V+LA  D
Sbjct: 311 DFIVEDHPQFNKLIDEIENSKVQYLFTMGKGGVGKTTVATQLATALSNKGYRVLLATTD 369


>gi|317970117|ref|ZP_07971507.1| cell division protein FtsH4 [Synechococcus sp. CB0205]
          Length = 626

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 25/183 (13%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIG 129
               A        + +  E + +++  L +P  F    +  P  +L+VG  G GKT    
Sbjct: 156 EAAVAVRFEDVAGINEAKEELQEVVAFLKEPERFTAVGARIPKGVLLVGPPGTGKT---- 211

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA 189
            L+K ++        A    F  AA +           +       S    L  +A ++A
Sbjct: 212 LLAKAIAGE------AGVPFFSMAASEF---------VELFVGVGASRVRDLFRQAKEKA 256

Query: 190 QAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
                 +  ID  GR                + ++L  +D  A +S + +L AT   + L
Sbjct: 257 PCIIF-IDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFAENSGVILLAATNRPDVL 315

Query: 247 RQV 249
              
Sbjct: 316 DAA 318


>gi|313206718|ref|YP_004045895.1| ATP-dependent metalloprotease ftsh [Riemerella anatipestifer DSM
           15868]
 gi|312446034|gb|ADQ82389.1| ATP-dependent metalloprotease FtsH [Riemerella anatipestifer DSM
           15868]
 gi|315023788|gb|EFT36790.1| Cell division protein ftsH [Riemerella anatipestifer RA-YM]
 gi|325335842|gb|ADZ12116.1| ATP-dependent Zn protease [Riemerella anatipestifer RA-GD]
          Length = 658

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 59/189 (31%), Gaps = 31/189 (16%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127
           E+   +   KDV+      +  + +   L    K +       P  +L+VG  G GKT  
Sbjct: 177 EKDKVQVTFKDVAGLEGAKEEVQEVVDFLKNAEK-YTKLGGKIPKGVLLVGPPGTGKT-- 233

Query: 128 IGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFK 187
              L+K ++        +   +                  +       S    L  +A  
Sbjct: 234 --LLAKAVAGEAKVPFFSLSGS---------------DFVEMFVGVGASRVRDLFAQAKA 276

Query: 188 QAQAKKVDVLIID-------TAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
           ++ A    ++ ID         GR             + ++L  +D     + + V+ AT
Sbjct: 277 KSPA----IIFIDEIDAIGRARGRGAFTGGNDERENTLNQLLTEMDGFGTDTNVIVMAAT 332

Query: 241 TGQNALRQV 249
              + L + 
Sbjct: 333 NRADILDKA 341


>gi|255263549|ref|ZP_05342891.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thalassiobium
           sp. R2A62]
 gi|255105884|gb|EET48558.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Thalassiobium
           sp. R2A62]
          Length = 422

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           D +REE +   +++  GV   ++I E L      +  + + +   V     ++       
Sbjct: 46  DIIREETKTAGLKAADGVPTPKEICEVLDDYVIGQSHAKRVLSVAVHNHYKRLNHAAKSG 105

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
            + + +     I++VG  G GKT +   L++ +
Sbjct: 106 GDIELAKSN--IMLVGPTGCGKTLLAQTLARIL 136


>gi|229824388|ref|ZP_04450457.1| hypothetical protein GCWU000282_01709 [Catonella morbi ATCC 51271]
 gi|229786188|gb|EEP22302.1| hypothetical protein GCWU000282_01709 [Catonella morbi ATCC 51271]
          Length = 652

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 14/99 (14%)

Query: 70  LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG 129
           L  K   +DV     L    E       P+++  N     +   I +VG NGVGKTT++ 
Sbjct: 323 LAAKDSGEDVLAVDHLAVGYEA-----TPVAQDLNLQVRRQEA-IALVGPNGVGKTTLLK 376

Query: 130 KLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            L  ++         A   T+R     Q+  +       
Sbjct: 377 TLIGQLP--------ALAGTYRFGTGVQIGYYDQNLVLP 407


>gi|226365886|ref|YP_002783669.1| hypothetical protein ROP_64770 [Rhodococcus opacus B4]
 gi|226244376|dbj|BAH54724.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 345

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 16/167 (9%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
              R  V++V G  G GKTT    L+  + +     +    + F +  ID + +     S
Sbjct: 2   AKKRIPVVIVAGFLGSGKTT---LLNHVLRNNRGVRVGVIVNDFGAVNIDSMMVAGQVDS 58

Query: 167 ADFVCSEIGSDAAAL----AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
              + +     A  +    A        A ++DV+I++ +G       L      +  VL
Sbjct: 59  MVSLSNGCMCCAVDVSDMDAMLDRLAHPASQIDVIIVEASG-------LAEPRNMIRLVL 111

Query: 223 KRLDPHAPHSVLQVL-DATTGQNALRQVEMFHAVAGT-TGLIMTKMD 267
              +PH  +  L V+ D    ++   Q             +I+ K D
Sbjct: 112 GSTNPHVMYGGLVVMVDGEQFEDMSEQHPDLGKHVKLADLVILNKTD 158


>gi|213691095|ref|YP_002321681.1| dTMP kinase [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|254808279|sp|B7GT80|KTHY_BIFLI RecName: Full=Thymidylate kinase; AltName: Full=dTMP kinase
 gi|213522556|gb|ACJ51303.1| dTMP kinase [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457150|dbj|BAJ67771.1| thymidylate kinase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 233

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 11/157 (7%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA--AGDTFRSAAIDQLKIWADRTSAD--- 168
           +   GV+GVGKTT + +L   +   G  V++    G T    AI QL +      A    
Sbjct: 6   VSFEGVDGVGKTTQVERLRAYLEAQGRTVVVTREPGGTVLGKAIRQLLLHGVDGGAVDIA 65

Query: 169 ------FVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                    ++     A     A ++ +    D  +  +         L     + + + 
Sbjct: 66  PRAEALLFAADRAQHVAETIRPALERGEVVITDRYLDSSLAYQAGGRELTPEEIRSLSMW 125

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTT 259
              +     + L  +D     N L   E     AG+ 
Sbjct: 126 ATNNLLPDRTYLLDMDPALSHNRLEHAEDRMESAGSD 162


>gi|210616567|ref|ZP_03291142.1| hypothetical protein CLONEX_03363 [Clostridium nexile DSM 1787]
 gi|210149747|gb|EEA80756.1| hypothetical protein CLONEX_03363 [Clostridium nexile DSM 1787]
          Length = 574

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 12/74 (16%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +IV +   K     +      YD  E++          FN   + +  V  +VG+NG GK
Sbjct: 327 RIVNKTPEKIIFNKIHFS---YDRQEILRD--------FNLVLNKKEKV-ALVGLNGSGK 374

Query: 125 TTVIGKLSKKMSDA 138
           +T+I  L +     
Sbjct: 375 STLINLLLRYYQPQ 388


>gi|168204439|ref|ZP_02630444.1| ABC transporter, permease/ATP-binding protein [Clostridium
           perfringens E str. JGS1987]
 gi|170664081|gb|EDT16764.1| ABC transporter, permease/ATP-binding protein [Clostridium
           perfringens E str. JGS1987]
          Length = 593

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 59  GVAVAQKIVEELLTKRYAKD----VSVQRVLYDVSELIHKMLMPLSKPFNWDFS---HRP 111
            VA A ++ E L  K   KD    + +++   DV+    K      KP   D S      
Sbjct: 318 AVAAANRVFEFLEEKEEVKDPNSAIKIEKPKGDVTFEHVKFGYKEDKPLIKDLSVDVKSG 377

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            ++ +VG  G GKTT+I  L +     G  + +   D
Sbjct: 378 QMVAIVGKTGAGKTTLINLLMRFYDVQGGSIKIDGVD 414


>gi|153012024|ref|YP_001373236.1| cobyrinic acid ac-diamide synthase [Ochrobactrum anthropi ATCC
           49188]
 gi|151563912|gb|ABS17407.1| Cobyrinic acid ac-diamide synthase [Ochrobactrum anthropi ATCC
           49188]
          Length = 408

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 12/76 (15%)

Query: 83  RVLYDVSEL--IHKMLMPLSKPFNWDFSHR--------PHVILVVGVNGVGKTTVIGKLS 132
           R +Y V ++  I + +   S+P      HR          V+   G  G GKTT    L+
Sbjct: 89  RRVYSVEDIAKIRQYMDAGSRPAGRYLPHRREGEELQIIAVMNFKG--GSGKTTTSAHLA 146

Query: 133 KKMSDAGLKVMLAAGD 148
           + ++  G +V+    D
Sbjct: 147 QYLALRGYRVLAVDLD 162


>gi|146312357|ref|YP_001177431.1| cryptic autophosphorylating protein tyrosine kinase Etk
           [Enterobacter sp. 638]
 gi|145319233|gb|ABP61380.1| lipopolysaccharide biosynthesis protein [Enterobacter sp. 638]
          Length = 726

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 68/185 (36%), Gaps = 19/185 (10%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGV-NGV 122
           ++ + E       ++V    V   V   +  +    +         +  VI++ G     
Sbjct: 485 KRFISE-RWNHRTRNVPFLPVDRPVDVFVEAIRGLRTSLHFTMMEAKNSVIMLTGPTQDC 543

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-DFVCSEIGSDAAAL 181
           GKT V   L+  ++ AG KV+    D  R   + Q+    +     D +  ++       
Sbjct: 544 GKTLVATSLAAIVAQAGKKVLFIDAD-MRKGYVHQIFSLTNTRGLADVLAGKVEY----- 597

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH------SVLQ 235
            ++A +      +DVL   T G++  N   +     + ++LK  + H          +L 
Sbjct: 598 -HDAIQHYARGGIDVL---TCGQVPGNPSELLIGDGLQQLLKWANDHYEIIIVDTPPILA 653

Query: 236 VLDAT 240
           V DAT
Sbjct: 654 VTDAT 658


>gi|70728919|ref|YP_258668.1| ABC transporter ATP-binding/permease [Pseudomonas fluorescens Pf-5]
 gi|68343218|gb|AAY90824.1| ABC transporter, ATP-binding/permease protein [Pseudomonas
           fluorescens Pf-5]
          Length = 610

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 10/117 (8%)

Query: 104 NWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---------TFRSA 153
           N +   RP   I ++G +G GK+T++  L +     G K+++   D           R  
Sbjct: 380 NLNLEIRPGEKIGLIGPSGAGKSTLVNLLLRLYDLQGGKILIDGQDIAGVTQESLRERIG 439

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
            I Q      R+  D +            +EA ++A+A +   L+ D  GR   ++ 
Sbjct: 440 MITQDTSLLHRSIRDNLLYGRPDATDEELWEAVRKARADEFIPLLSDAQGRTGFDAH 496


>gi|71654095|ref|XP_815673.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70880746|gb|EAN93822.1| hypothetical protein Tc00.1047053511545.110 [Trypanosoma cruzi]
          Length = 372

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREE-------LEDLLIRSD 57
           +   E L     L K       +  E + D+     +++ +REE       LED L   +
Sbjct: 162 QERQEELGMFESLRKRLEQLRQEHAEALADLQREEAVEESLREELQREERQLEDALHE-E 220

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSK 101
           + +    K+ E+ + +  A+  +V +   ++ +   ++L  +++
Sbjct: 221 VRLKELLKMREDEVDRMKAELKAVCQRKAELQQQHQRLLEEVAE 264


>gi|95928886|ref|ZP_01311632.1| cobalamin synthesis protein, P47K [Desulfuromonas acetoxidans DSM
           684]
 gi|95135231|gb|EAT16884.1| cobalamin synthesis protein, P47K [Desulfuromonas acetoxidans DSM
           684]
          Length = 362

 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           ILV G  G GKTT++ + + K+S  GLKV L   D
Sbjct: 6   ILVGGFLGAGKTTLLAETAHKLSLQGLKVGLITND 40


>gi|330957739|gb|EGH57999.1| ATP-binding Mrp/Nbp35 family protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 364

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 63/185 (34%), Gaps = 27/185 (14%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G  GVGK+T    L+  +S  G +V +   D +              +         G+ 
Sbjct: 107 GKGGVGKSTTAANLALALSREGARVGILDADIY------------GPSQGVMFGIPEGTR 154

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRL--DPHAPHSVLQ 235
                 + F   +A  +DV+ +  A    +N+ ++     +   L +L            
Sbjct: 155 PKIKDQKWFVPIEAHGIDVMSM--AFLTDDNTPMVWRGPMVSGALLQLVTQTAWNDLDYL 212

Query: 236 VLDATTGQNALRQVEMFHAVAGTTGLIM--TKMD---GTARGGGLIPIVVTHKIPVYFLG 290
           V+D   G   ++            G ++  T  D     A+ G  + +     IPV  LG
Sbjct: 213 VIDMPPGTGDIQLTLA--QKVPVAGAVIVTTPQDLALLDAKKG--VEMFRKVNIPV--LG 266

Query: 291 VGEGI 295
           V E +
Sbjct: 267 VVENM 271


>gi|331003695|ref|ZP_08327189.1| hypothetical protein HMPREF0491_02051 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412078|gb|EGG91473.1| hypothetical protein HMPREF0491_02051 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 307

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%)

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              V +     D +  I   L+   K    +  ++  V+ V G +GVGK+ +   LS  +
Sbjct: 23  GDKVVISEYHIDRANRIFPYLLEEIKKVKEESGNKKIVVAVCGGSGVGKSGIAAVLSYYL 82

Query: 136 SDAGLKVMLAAGDTF 150
            + GL     +GD +
Sbjct: 83  KEIGLGSYTLSGDNY 97


>gi|319897096|ref|YP_004135291.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3031]
 gi|317432600|emb|CBY80961.1| protease, ATP-dependent zinc-metallo [Haemophilus influenzae F3031]
          Length = 635

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 147 KVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 201

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 202 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 246

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 247 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 303


>gi|255719510|ref|XP_002556035.1| KLTH0H03542p [Lachancea thermotolerans]
 gi|238942001|emb|CAR30173.1| KLTH0H03542p [Lachancea thermotolerans]
          Length = 989

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH-----RPHVILVVGVNGVGKT 125
           L +   K  +    L DV + + + L  L    N DF +     +P ++L+VG  GVGK 
Sbjct: 450 LEECKKKLDNDHYGLLDVKKRLIEYLSVL--KLNVDFKNEGSKAKPPIMLLVGPPGVGK- 506

Query: 126 TVIGK 130
           T I K
Sbjct: 507 TSIAK 511


>gi|167856244|ref|ZP_02478978.1| chaperone ClpB [Haemophilus parasuis 29755]
 gi|167852631|gb|EDS23911.1| chaperone ClpB [Haemophilus parasuis 29755]
          Length = 857

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 74/192 (38%), Gaps = 35/192 (18%)

Query: 38  SRRLDDGVREELE---DLLIRSDIGVAVAQKIVEELLTKRYAKDVSV-----QRVLYDVS 89
            ++L + V+ E E   + L+R+     V  + + E+L+K     VS      +  L  + 
Sbjct: 508 EKQLQEAVKREEEGGENHLLRT----KVTDEEIAEVLSKASGIPVSKMMEGEKEKLLRME 563

Query: 90  ELIHKMLMPLSKPFN------------WDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMS 136
           E++HK ++  S+  +                +RP    L +G  GVGKT +   L+  + 
Sbjct: 564 EVLHKRVIGQSEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLF 623

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
           D    +        R    + ++  +           +G +      EA ++   +   V
Sbjct: 624 DDQDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRR---RPYSV 673

Query: 197 LIIDTAGRLHNN 208
           +++D   + H +
Sbjct: 674 VLLDEVEKAHPD 685


>gi|160899982|ref|YP_001565564.1| ATP-dependent helicase HrpA [Delftia acidovorans SPH-1]
 gi|160365566|gb|ABX37179.1| ATP-dependent helicase HrpA [Delftia acidovorans SPH-1]
          Length = 1391

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 11/145 (7%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR--SAAIDQLKIWADRTS 166
            R  VI+V G  G GKTT + K++  +    +          R       Q +  A  + 
Sbjct: 57  DRHQVIIVCGETGSGKTTQLPKIALALGRGKVNATPDDKGQVRGHLIGHTQPRRIAASSV 116

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKR 224
           A  +  E+ +    +     +       D L  D + +L  + IL+A      +++    
Sbjct: 117 AKRIAEELNTPLGDVVGYKVR-----FQDRLSKDASVKLMTDGILLAETQTDPLLKAYDT 171

Query: 225 LDPHAPHSVLQVLDATTGQNALRQV 249
           L     H     +D   G   ++Q+
Sbjct: 172 LIIDEAHERSLNIDFLLGY--IKQI 194


>gi|78044595|ref|YP_361088.1| cobalt ABC transporter ATP-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996710|gb|ABB15609.1| cobalt ABC transporter, ATP-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 277

 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDA 138
           + +VG NG GKTT I  L+  +   
Sbjct: 36  VALVGPNGSGKTTFIKLLAGLLEPN 60


>gi|324499925|gb|ADY39980.1| Heterogeneous nuclear ribonucleoprotein U [Ascaris suum]
          Length = 1756

 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 67   VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            ++EL T+  A+ VS Q +    ++L    L  L  P          V+++VG+ GVGKTT
Sbjct: 1435 LDELSTEGRAEAVSQQMIF--AADLERDRL--LRGPVPPSSKGECTVLMMVGLPGVGKTT 1490


>gi|323357300|ref|YP_004223696.1| ATPase [Microbacterium testaceum StLB037]
 gi|323273671|dbj|BAJ73816.1| ATPase [Microbacterium testaceum StLB037]
          Length = 555

 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 74/198 (37%), Gaps = 33/198 (16%)

Query: 60  VAVAQKIVEELLTKRYA-----KDVSVQRVLYDVSELI--------HKMLMPLSKPFNWD 106
           +  A+ I E + T         K+++  R ++   ++          + +  L     + 
Sbjct: 202 LRAARDITEAVDTSVVGVLPVDKELASGRAVFSFDDIKDGRGSFAHKEAMRELRTNLQYV 261

Query: 107 FSHRPHVILVVG--VNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164
               P  ++V+   + G GK+T    L+  ++  G  V+L   D  R             
Sbjct: 262 DVDHPAKVIVITSPLPGDGKSTTAANLAVSIAATGRSVILIDADMRRP-----------V 310

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDV---LIIDTAGRLHNNSILMAGIGKMIRV 221
               F  S+    +  LA  A  +  A +VD    L +  AGR   N   M G  +M ++
Sbjct: 311 LGGMFGFSDDVGLSDVLAGRAQIEQVAHQVDEHGRLFVVAAGRTPPNPTEMVGSQRMQQL 370

Query: 222 LKRLDPHAPHSVLQVLDA 239
            +RL       ++ V+D+
Sbjct: 371 ARRL----SDDMIVVIDS 384


>gi|320156066|ref|YP_004188445.1| ATP-dependent helicase HrpA [Vibrio vulnificus MO6-24/O]
 gi|319931377|gb|ADV86241.1| ATP-dependent helicase HrpA [Vibrio vulnificus MO6-24/O]
          Length = 1310

 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 78/222 (35%), Gaps = 43/222 (19%)

Query: 2   SNQKVASESLSWIRK-LTKGFASTSLKLKEGIT--DIISSRRLDDGVREELEDLLIRSDI 58
           S QK  + S + +RK L++       +L + I     I+     + V +E+         
Sbjct: 13  SEQKAQANSAASLRKALSQCLIKDRFRLSKRIAGASKINKESARNAVFDEI--------- 63

Query: 59  GVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH--VILV 116
            + +A+ ++E             QR  Y       ++L P+S+  +       H  V++V
Sbjct: 64  ALDIAKSMME-----------VEQRSRYQPKIEYPEIL-PVSQKKDDIADAIAHHQVVIV 111

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------S 166
            G  G GKTT + K+  ++   G   ++      R AA       A+             
Sbjct: 112 AGETGSGKTTQLPKICAEL-GRGKFGLIGHTQPRRLAARSVANRIAEEMETQLGDFVGYK 170

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKK------VDVLIIDTA 202
             F      +    L  +    A+ +        D +IID A
Sbjct: 171 VRFNDQISENTQIKLMTDGILLAEIQHDRFLNQYDTIIIDEA 212


>gi|270290762|ref|ZP_06196986.1| guanylate kinase [Pediococcus acidilactici 7_4]
 gi|304386281|ref|ZP_07368614.1| guanylate kinase [Pediococcus acidilactici DSM 20284]
 gi|270280822|gb|EFA26656.1| guanylate kinase [Pediococcus acidilactici 7_4]
 gi|304327638|gb|EFL94865.1| guanylate kinase [Pediococcus acidilactici DSM 20284]
          Length = 199

 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 39/134 (29%), Gaps = 26/134 (19%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
            + F         +I++ G  G GKTTV         +    V+     T R       +
Sbjct: 1   MQIFKLGVREMNKIIVIAGPTGSGKTTV-----ADYLNQRYGVVKVITHTTRP------Q 49

Query: 160 IWADRTSADFVCSEIGSDAAALAYEAFKQAQ---------------AKKVDVLIIDTAGR 204
              ++   D+      S       E  + A                   +  +++DTAG 
Sbjct: 50  RTNEKQGVDYYFETADSFDQNHYLEQVQYAHYRYGSSYEGLTQAWQKNPIACIVLDTAGA 109

Query: 205 LHNNSILMAGIGKM 218
           +     L   +  +
Sbjct: 110 ITYQQKLGDQVEIL 123


>gi|167576764|ref|ZP_02369638.1| ClpA/B type protease [Burkholderia thailandensis TXDOH]
          Length = 885

 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 62/190 (32%), Gaps = 26/190 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ + L  +   +    +  +  ++E I      L  P       +PH V L+ G +G
Sbjct: 575 VLKLADTLAERVVGQ----RHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 624

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L++ +       +      F+ A           T +    +  G     
Sbjct: 625 VGKTETALA-LAETLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 673

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +  + +   V+++D   + H +             +   +       ++V+ + 
Sbjct: 674 QGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLT 733

Query: 238 DATTGQNALR 247
                +  ++
Sbjct: 734 SNVGSERVMQ 743


>gi|77641399|gb|ABB00544.1| I2 [Nicotiana tabacum]
          Length = 236

 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG-- 129
           T+R +  V  +  ++     I+ ++  L    +     +  VI ++G+ GVGKTT+    
Sbjct: 1   TRRLSTSVVDESDIFGRQNEINILVDRLLS--DDAKEKKLTVIPIIGMAGVGKTTLAKVV 58

Query: 130 ----KLSKKMSDAGLKVMLAAGDTFRSA 153
               K+ +         +    D FR  
Sbjct: 59  YNDEKVKQHFKLKSWICVSEPYDVFRIT 86


>gi|318059835|ref|ZP_07978558.1| chaperone [Streptomyces sp. SA3_actG]
          Length = 845

 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 83/215 (38%), Gaps = 29/215 (13%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
            +Q VA+E       L +  A+   +L +GI +      + +   E++ ++L R   G+ 
Sbjct: 466 KDQAVAAEDFERADGLKREIAAAREEL-DGIAE--RREGVREVTVEDIAEVLSRR-TGIP 521

Query: 62  VAQKIVEE-------LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           VAQ + E+       L    +++ V  +  +  V++ + +    +  P            
Sbjct: 522 VAQ-LTEDEKQKLMKLEEALHSRVVGQEEAVTAVAQAVRRNRAGMGDP-----DRPVGSF 575

Query: 115 LVVGVNGVGKTTVIGK-LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           L +G  GVGK T + K L++ +           GD  R    D  +     T +  V + 
Sbjct: 576 LFLGPTGVGK-TELAKALAELL----------FGDENRMVRFDMSEFQEKHTVSRLVGAP 624

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            G      A +  ++ +     VL+ D   + H +
Sbjct: 625 PGYVGHEEAGQLTEKVRRSPYSVLLFDEVEKAHPD 659


>gi|300814281|ref|ZP_07094553.1| nucleotide-binding protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511548|gb|EFK38776.1| nucleotide-binding protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 256

 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            FN   + +  + +V G  GVGKT     L+  +   G KV +   D
Sbjct: 8   EFNESSNVKNVIAVVSGKGGVGKTFTTSVLASHLRRQGYKVGVLDAD 54


>gi|299771386|ref|YP_003733412.1| hypothetical protein AOLE_15760 [Acinetobacter sp. DR1]
 gi|298701474|gb|ADI92039.1| hypothetical protein AOLE_15760 [Acinetobacter sp. DR1]
          Length = 396

 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 112 HVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           HVILV  G  GVGK+T    L+  +   GLKV +   D +
Sbjct: 139 HVILVSSGKGGVGKSTTTVNLALALQKMGLKVGVLDADIY 178


>gi|260582442|ref|ZP_05850233.1| cell division protein [Haemophilus influenzae NT127]
 gi|260094422|gb|EEW78319.1| cell division protein [Haemophilus influenzae NT127]
          Length = 456

 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 150 KVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 204

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 205 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 249

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 250 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 306


>gi|254976895|ref|ZP_05273367.1| putative type IV pilus-assembly protein [Clostridium difficile
           QCD-66c26]
 gi|255094282|ref|ZP_05323760.1| putative type IV pilus-assembly protein [Clostridium difficile CIP
           107932]
 gi|255316035|ref|ZP_05357618.1| putative type IV pilus-assembly protein [Clostridium difficile
           QCD-76w55]
 gi|255518692|ref|ZP_05386368.1| putative type IV pilus-assembly protein [Clostridium difficile
           QCD-97b34]
 gi|255651814|ref|ZP_05398716.1| putative type IV pilus-assembly protein [Clostridium difficile
           QCD-37x79]
 gi|306521602|ref|ZP_07407949.1| putative type IV pilus-assembly protein [Clostridium difficile
           QCD-32g58]
          Length = 449

 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 5/133 (3%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            K   + ++    L D  EL         K  N   + R  V+LV G  G GKTT +  L
Sbjct: 173 EKIVLRILNRDTFLKDKLEL--GFSEEAIKSINRIINKRAGVLLVTGPTGSGKTTTVYSL 230

Query: 132 SKKMSDAGLKVMLAAGDT-FRSAAIDQLKIWADRTSADFVCSEI--GSDAAALAYEAFKQ 188
              +      +M       ++   I Q+++ +    +  V        D   +     + 
Sbjct: 231 LNDLKGINKNIMTIENPVEYKMDGISQIQVNSKVGLSFDVGLRAILRQDPDIIMVGEIRD 290

Query: 189 AQAKKVDVLIIDT 201
           A+  K+ V    T
Sbjct: 291 AETAKIAVRAAIT 303


>gi|171683531|ref|XP_001906708.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941725|emb|CAP67379.1| unnamed protein product [Podospora anserina S mat+]
          Length = 306

 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKMS-DAGLKVMLAAGDTFRSAAIDQL 158
           + RP +I + GV GVGKTT++  L++ +    GL  ++ + D F     DQL
Sbjct: 39  TSRPFIIGLNGVQGVGKTTLVRALAETLQSREGLPTLVVSIDDFYLTHADQL 90


>gi|153947751|ref|YP_001399721.1| type VI secretion ATPase [Yersinia pseudotuberculosis IP 31758]
 gi|152959246|gb|ABS46707.1| type VI secretion ATPase, ClpV1 family [Yersinia pseudotuberculosis
           IP 31758]
          Length = 882

 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 82/238 (34%), Gaps = 55/238 (23%)

Query: 44  GVREELEDL-----LIRSDIGVAVAQKIVEE-----------------------LLTKRY 75
            ++EEL  +     L+  D+ V     ++ +                       L T+  
Sbjct: 526 ALQEELVQIQGNAPLLSLDVDVRTVAAVIADWTGVPLSSLLKDEQTDLLQLENHLATRVV 585

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT-TVIGKLSKK 134
            +D +    L  +++ +      L+       +    V L+VG +G+GKT T +  L+  
Sbjct: 586 GQDTA----LGALAQRLRAAKTGLTSE-----NGPLGVFLLVGPSGIGKTETALA-LADS 635

Query: 135 MSDAGLKVMLAAGDTFRSA-AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK 193
           +      ++      ++ A  + QLK            S  G           +  + + 
Sbjct: 636 LFGGEKSLITINMSEYQEAHTVSQLK-----------GSPPGYVGYGQGGVLTEAVRKRP 684

Query: 194 VDVLIIDTAGRLHNNS-ILMAG--IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQ 248
             V+++D   + H +   L         +R  +  +    ++V+ V+ A  G + L Q
Sbjct: 685 YSVVLLDEVEKAHRDVLNLFYQVFDRGFMRDGEGREIDFRNTVM-VMTANLGSDHLMQ 741


>gi|309973145|gb|ADO96346.1| ATP-dependent protease FtsH [Haemophilus influenzae R2846]
          Length = 635

 Score = 36.4 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLS 132
           K    DV+      +    I   L   +K  N      P  IL+VG  G GKT     L+
Sbjct: 147 KVTFADVAGCDEAKEEVSEIVDFLRDPNKFQNLG-GKIPKGILMVGPPGTGKT----LLA 201

Query: 133 KKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QA 191
           + ++            +                  +       S    +  +A K A   
Sbjct: 202 RAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCL 246

Query: 192 KKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             +D   ID  GR     +          + ++L  +D  + +  + V+ AT   + L 
Sbjct: 247 IFIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLD 303


>gi|332883563|gb|EGK03846.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Dysgonomonas
           mossii DSM 22836]
          Length = 411

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVG 123
           +KI E L      ++ + + +   V     ++L         + S+    I++VG  G G
Sbjct: 65  KKIKEYLDGYIIGQENAKRYLSVAVYNHYKRILQGKEDDIEIEKSN----IIMVGPTGTG 120

Query: 124 KTT---VIGKL 131
           KT     I KL
Sbjct: 121 KTLLARTIAKL 131


>gi|326385419|ref|ZP_08207062.1| cobyrinic acid a,c-diamide synthase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326210096|gb|EGD60870.1| cobyrinic acid a,c-diamide synthase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 400

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           + ++L         D      V    G  GVGK+TV   L+  ++  G +V++   D+ 
Sbjct: 89  MREVLGASPARAPLDVPALIAVQNFKG--GVGKSTVTTHLAHYLAVQGYRVLVVDCDSQ 145


>gi|304395618|ref|ZP_07377501.1| type VI secretion ATPase, ClpV1 family [Pantoea sp. aB]
 gi|304356912|gb|EFM21276.1| type VI secretion ATPase, ClpV1 family [Pantoea sp. aB]
          Length = 850

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 61/197 (30%), Gaps = 22/197 (11%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT-T 126
           E L  +   +  +++ ++      I      L+ P          V ++ G +G GKT T
Sbjct: 546 ERLCERVTGQSHALEAIVRQ----IRTSRAGLADPL-----KPMGVFMLAGPSGTGKTET 596

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
            +  L++ +      ++      ++ A           + A    S  G           
Sbjct: 597 ALA-LAEMLYGGSRGLITLNMSEYQEA----------HSVAGLKGSPPGYVGYGQGGVLT 645

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPH-SVLQVLDATTGQNA 245
           +  + +   V++ID   + H + I +        V++  +          ++  +   + 
Sbjct: 646 EAVRRQPYSVVLIDEVEKAHRDVIELFYQVFDKGVMEDSEGQTIDFRNTFIILTSNLADD 705

Query: 246 LRQVEMFHAVAGTTGLI 262
           +              L+
Sbjct: 706 VIMAAGEKESPDINALV 722


>gi|262280114|ref|ZP_06057899.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260465|gb|EEY79198.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 396

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 112 HVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           HVILV  G  GVGK+T    L+  +   GLKV +   D +
Sbjct: 139 HVILVSSGKGGVGKSTTTVNLALALQKMGLKVGVLDADIY 178


>gi|255281022|ref|ZP_05345577.1| CO dehydrogenase/acetyl-CoA synthase complex, accessory protein
           CooC [Bryantella formatexigens DSM 14469]
 gi|255268470|gb|EET61675.1| CO dehydrogenase/acetyl-CoA synthase complex, accessory protein
           CooC [Bryantella formatexigens DSM 14469]
          Length = 258

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I V G  GVGKTT    L++  ++ G  V+ A  D
Sbjct: 3   IAVTGKGGVGKTTFAATLARLYAEEGRPVLAADVD 37


>gi|225433946|ref|XP_002267518.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 697

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 44/144 (30%)

Query: 14  IRKLTKGFASTS--LKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEE-- 69
            RK+  GF      L+L   + +I  + R++D  +  +E+      I   + + +++   
Sbjct: 162 FRKVITGFDKLRFQLRLGGEMDEI--NARIEDLSKRRMEE------INDRMMEDLLKRRP 213

Query: 70  --LLTKRYAKDVSVQRVL--------------------YDVSELIHKMLMPLSKPFNWDF 107
             ++      +  ++R                       DV E++ ++L      F    
Sbjct: 214 KDVIRDARNGEQGIERWFPHRQVPPSYIIGKPDIVSFDDDVKEIVARLLTDEKDFF---- 269

Query: 108 SHRPHVILVVGVNGVGKTTVIGKL 131
                +  VVG+ G+GKTT + KL
Sbjct: 270 -----IFSVVGMQGIGKTT-LAKL 287


>gi|219685942|ref|ZP_03540740.1| Cell division protease FtsH family protein [Borrelia garinii Far04]
 gi|219672516|gb|EED29557.1| Cell division protease FtsH family protein [Borrelia garinii Far04]
          Length = 227

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 71  LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
             K   KDV+ Q  +      + + L    K F    +  P  +L+VG  G GKT  + K
Sbjct: 160 KNKITFKDVAGQEEVKQELREVVEFLKN-PKKFEKIGAKIPKGVLLVGSPGTGKTL-LAK 217


>gi|218461953|ref|ZP_03502044.1| plasmid partitioning protein RepAb [Rhizobium etli Kim 5]
          Length = 326

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             V+   G  G GKTT    L++ ++  G +++    D
Sbjct: 44  VSVMNFKG--GSGKTTTAAHLAQYLAMRGYRILAIDLD 79


>gi|149637320|ref|XP_001509472.1| PREDICTED: similar to
           6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
           isoform 2 [Ornithorhynchus anatinus]
          Length = 449

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW---- 161
            F++ P ++++VG+   GKT +  KL++ ++  G    +     +R  A+   K +    
Sbjct: 14  QFTNSPTMVIMVGLPARGKTYISTKLTRYLNWIGTPTKVFNLGQYRREAVQSYKNYEFFR 73

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            D   A  +       A A   +  +    ++  V + D          L+    K  
Sbjct: 74  PDNKEAMMIR---KQCALAALNDVHEYLSHEEGHVAVFDATNTTRERRSLILQFAKEH 128


>gi|149637318|ref|XP_001509392.1| PREDICTED: similar to
           6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
           isoform 1 [Ornithorhynchus anatinus]
          Length = 470

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW---- 161
            F++ P ++++VG+   GKT +  KL++ ++  G    +     +R  A+   K +    
Sbjct: 35  QFTNSPTMVIMVGLPARGKTYISTKLTRYLNWIGTPTKVFNLGQYRREAVQSYKNYEFFR 94

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
            D   A  +       A A   +  +    ++  V + D          L+    K  
Sbjct: 95  PDNKEAMMIR---KQCALAALNDVHEYLSHEEGHVAVFDATNTTRERRSLILQFAKEH 149


>gi|145487348|ref|XP_001429679.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396773|emb|CAK62281.1| unnamed protein product [Paramecium tetraurelia]
          Length = 205

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 51/181 (28%), Gaps = 49/181 (27%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166
           F      IL++G++G GKTT++ KL +                       Q         
Sbjct: 13  FDPPIFKILIIGLDGAGKTTLLNKLKQLAKH----------------PFIQFDKIPKTVG 56

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLD 226
            +            + Y A  ++  +K  V   D  G                R + +  
Sbjct: 57  LNI---------TEIEYMASNRSMNQKYKVTYWDLGGSQTQ------------RSIWKKY 95

Query: 227 PHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPV 286
               H ++ V+D    +    +V           LI          G ++      ++P+
Sbjct: 96  YGECHGIIFVIDGNKSER-WDEVRNCFKY--YIHLIF---------GEVLNDKSHDQVPI 143

Query: 287 Y 287
            
Sbjct: 144 L 144


>gi|89255406|ref|NP_660042.2| plasmid partitioning protein RepAd [Rhizobium etli CFN 42]
 gi|190894337|ref|YP_001984631.1| plasmid partitioning protein RepAb [Rhizobium etli CIAT 652]
 gi|89213360|gb|AAB69096.3| plasmid partitioning protein RepAd [Rhizobium etli CFN 42]
 gi|190699998|gb|ACE94081.1| plasmid partitioning protein RepAb [Rhizobium etli CIAT 652]
          Length = 404

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             V+   G  G GKTT    L++ ++  G +++    D
Sbjct: 122 VSVMNFKG--GSGKTTTAAHLAQYLAMRGYRILAIDLD 157


>gi|83945192|ref|ZP_00957541.1| arginine/ornithine transport system ATPase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851362|gb|EAP89218.1| arginine/ornithine transport system ATPase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 326

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 15/159 (9%)

Query: 61  AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVN 120
           A+A K+++            V+    D      ++L  +      D + +   I + GV 
Sbjct: 4   ALADKLIDGDRAALARGITLVESTRADHQARARELLTAVM-----DRTGKAWRIGLTGVP 58

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGD--TFRS-AAIDQLKIWADRTSAD----FVCSE 173
           GVGK+T+I +L   ++DAG KV + A D  + R+  +I   K      + D       S 
Sbjct: 59  GVGKSTLIERLGGHLTDAGRKVAVLAVDPSSSRTKGSILGDKTRMGALAVDRNAFIRPSP 118

Query: 174 IGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNS 209
                  +A    E+    +A   DV+I++T G   + +
Sbjct: 119 SAGSLGGVARKTRESMLLCEAAGYDVVIVETVGVGQSET 157


>gi|116511356|ref|YP_808572.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116107010|gb|ABJ72150.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 748

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 88/241 (36%), Gaps = 48/241 (19%)

Query: 22  ASTSLKLKEGITD----IISSRRLDD-----------GVREELEDLLIRSDIGVAVAQKI 66
           +      K+ +TD    +I+ + ++             ++E+ +  LI           +
Sbjct: 389 SKLRELQKQEVTDEDMPVITEKDIEQIVEQKTQIPVGDLKEKEQTQLI----------NL 438

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            ++L      +D +V +    +S+ I +  + L KP     S      L VG  GVGKT 
Sbjct: 439 ADDLKAHVIGQDEAVDK----ISKAIRRSRVGLGKPNRPIGS-----FLFVGPTGVGKTE 489

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           +  +L+K++   G    +   D          +     + A  + +  G      A +  
Sbjct: 490 LAKQLAKEL--FGSSESMIRFDMS--------EYMEKHSVAKLIGAPPGYVGYEEAGQLT 539

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMA----GIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++ +     ++++D   + H + + M       G++     R        ++   +A TG
Sbjct: 540 ERVRRNPYSLILLDEIEKAHPDVMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSNAGTG 599

Query: 243 Q 243
           +
Sbjct: 600 K 600


>gi|317482642|ref|ZP_07941656.1| ABC transporter [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915888|gb|EFV37296.1| ABC transporter [Bifidobacterium sp. 12_1_47BFAA]
          Length = 612

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 24/167 (14%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSAAIDQLKIWADRT----- 165
           + +VG  G GKTT++  L +    +G  + +   DT    R    DQ  +    T     
Sbjct: 402 VAIVGPTGAGKTTMVNLLMRFYEISGGLISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRG 461

Query: 166 ----SADFVCSEIGSDAAALAYEAFK-----QAQAKKVDVLIIDTAGRLHNNSILMAGIG 216
               +  +    + +     A +A       ++     D ++ D        S L  G  
Sbjct: 462 TVRENVAYSKPGVTNKQIEDACKAVGLDHFIRSLPDGYDTVLDD-------KSSLSQGQK 514

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           +++ + + +   AP  +L    ++        ++             
Sbjct: 515 QLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSF 561


>gi|262274889|ref|ZP_06052700.1| cell division protein FtsH [Grimontia hollisae CIP 101886]
 gi|262221452|gb|EEY72766.1| cell division protein FtsH [Grimontia hollisae CIP 101886]
          Length = 649

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 50/169 (29%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++     
Sbjct: 159 DEAKEDVKELVDYLRDP--SRFQKLGGKIPTGVLMVGPPGTGKT----LLAKAIAGEAKV 212

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
                  +                  +       S    +  +A K +      +  ID 
Sbjct: 213 PFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKASPCIIF-IDEIDA 256

Query: 202 AGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR                + ++L  +D    +  + V+ AT   + L 
Sbjct: 257 VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 305


>gi|302522782|ref|ZP_07275124.1| ATP-dependent chaperone ClpB [Streptomyces sp. SPB78]
 gi|302431677|gb|EFL03493.1| ATP-dependent chaperone ClpB [Streptomyces sp. SPB78]
          Length = 845

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 83/215 (38%), Gaps = 29/215 (13%)

Query: 2   SNQKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVA 61
            +Q VA+E       L +  A+   +L +GI +      + +   E++ ++L R   G+ 
Sbjct: 466 KDQAVAAEDFERADGLKREIAAAREEL-DGIAE--RREGVREVTVEDIAEVLSRR-TGIP 521

Query: 62  VAQKIVEE-------LLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVI 114
           VAQ + E+       L    +++ V  +  +  V++ + +    +  P            
Sbjct: 522 VAQ-LTEDEKQKLMKLEEALHSRVVGQEEAVTAVAQAVRRNRAGMGDP-----DRPVGSF 575

Query: 115 LVVGVNGVGKTTVIGK-LSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           L +G  GVGK T + K L++ +           GD  R    D  +     T +  V + 
Sbjct: 576 LFLGPTGVGK-TELAKALAELL----------FGDENRMVRFDMSEFQEKHTVSRLVGAP 624

Query: 174 IGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
            G      A +  ++ +     VL+ D   + H +
Sbjct: 625 PGYVGHEEAGQLTEKVRRSPYSVLLFDEVEKAHPD 659


>gi|282600857|ref|ZP_05979925.2| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM
           15176]
 gi|282571161|gb|EFB76696.1| ATP-dependent metalloprotease FtsH [Subdoligranulum variabile DSM
           15176]
          Length = 681

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
           K    DV+         + + + L    K FN   +  PH +L+VG  G GKT
Sbjct: 185 KATFADVAGADEEKAELQEVVEFLKAPGK-FNSLGARIPHGVLLVGPPGTGKT 236


>gi|261380616|ref|ZP_05985189.1| hypothetical protein NEISUBOT_04649 [Neisseria subflava NJ9703]
 gi|284796594|gb|EFC51941.1| sporulation initiation inhibitor protein Soj [Neisseria subflava
           NJ9703]
          Length = 256

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 7/120 (5%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTF-RSAAIDQLKIWADRTSADFVCSEIGSDAA 179
           GVGKTT    L+  ++  G ++++   D    +     +           V         
Sbjct: 14  GVGKTTTTVNLAASLASKGRRILVVDLDPQGNATTGSGINKATIENGVYQVVLGETDIPN 73

Query: 180 ALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDA 239
           A+      +++    DVL  +          L+  I + IR+   L   A      ++D 
Sbjct: 74  AVV-----RSKEGGYDVLGANRT-LAGAEVELVQEIAREIRLKNALQLVADDYDYVLIDC 127


>gi|171741574|ref|ZP_02917381.1| hypothetical protein BIFDEN_00660 [Bifidobacterium dentium ATCC
           27678]
 gi|306823846|ref|ZP_07457220.1| multidrug resistance ABC superfamily ATP binding cassette
           transporter, ABC/membrane protein [Bifidobacterium
           dentium ATCC 27679]
 gi|171277188|gb|EDT44849.1| hypothetical protein BIFDEN_00660 [Bifidobacterium dentium ATCC
           27678]
 gi|304552844|gb|EFM40757.1| multidrug resistance ABC superfamily ATP binding cassette
           transporter, ABC/membrane protein [Bifidobacterium
           dentium ATCC 27679]
          Length = 607

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 24/167 (14%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---RSAAIDQLKIWADRT----- 165
           + +VG  G GKTT++  L +    +G  + +   DT    R    DQ  +    T     
Sbjct: 397 VAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRG 456

Query: 166 ----SADFVCSEIGSDAAALAYEAFKQAQA-----KKVDVLIIDTAGRLHNNSILMAGIG 216
               +  +    +  +    A +A              D ++ D A        L  G  
Sbjct: 457 TVRENIAYSKKGVTDEQIVAACKAVGLHHYIMSLPDGYDTILDDKA-------SLSQGQK 509

Query: 217 KMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM 263
           +++ + + +   AP  +L    ++        ++             
Sbjct: 510 QLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSF 556


>gi|167574963|ref|ZP_02367837.1| ABC transporter, ATP-binding protein [Burkholderia oklahomensis
           C6786]
          Length = 343

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 10/147 (6%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADF-VC 171
           V+  +G NG GK+T I  L    + +     +A  D  R+ A + ++      S  F + 
Sbjct: 61  VVGFIGPNGAGKSTTIRLLCGLFAPSAGSATVAGFDV-RTEA-ESVRAHIGYMSQKFSLY 118

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDV---LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
            ++        +    +     +D      I+TAG       L+  +    R    L   
Sbjct: 119 GDLTCRENLRFFAGIYRVPRDAIDERIRFAIETAGLEGREDALVRTLAGGWRQRLALGCA 178

Query: 229 APHS--VLQVLDATTGQNALRQVEMFH 253
             H   VL + + T+G     Q     
Sbjct: 179 ILHRPPVLFLDEPTSGVE--PQARRRF 203


>gi|163734646|ref|ZP_02142085.1| subtilin transport ATP-binding protein, putative [Roseobacter
           litoralis Och 149]
 gi|161392139|gb|EDQ16469.1| subtilin transport ATP-binding protein, putative [Roseobacter
           litoralis Och 149]
          Length = 621

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 18/96 (18%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VG NG GKTT+I  L +        V     D                   DF      
Sbjct: 406 LVGGNGSGKTTLIKLLCRLYDPQEGSVTYDGLDVQ-----------------DFDPVAYR 448

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSIL 211
              + +  +  + A   + ++ + D  GR  N++ L
Sbjct: 449 KQFSVIFQDFVQFAYTGRDNIRLAD-LGRDGNDARL 483


>gi|254300808|ref|ZP_04968252.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei 406e]
 gi|157811479|gb|EDO88649.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei 406e]
          Length = 888

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ E L  +   +       +  ++E I      L  P       +PH V L+ G +G
Sbjct: 578 VLKLAETLAERVVGQ----PHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 627

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L++ +       +      F+ A           T +    +  G     
Sbjct: 628 VGKTETALA-LAETLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 676

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +  + +   V+++D   + H +             +   +       ++V+ + 
Sbjct: 677 QGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLT 736

Query: 238 DATTGQNALR 247
                +  ++
Sbjct: 737 SNVGSERVMQ 746


>gi|270308576|ref|YP_003330634.1| ATP-dependent Clp protease ATP-binding subunit [Dehalococcoides sp.
           VS]
 gi|270154468|gb|ACZ62306.1| ATP-dependent Clp protease ATP-binding subunit [Dehalococcoides sp.
           VS]
          Length = 812

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 19/133 (14%)

Query: 6   VASESLSWIRKLTKGFA------STSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           +  E+ S +++  K             K      + +   ++ + V  E    L+ S  G
Sbjct: 425 IEEEAASQLQEYEKAAELKAEKMRLEEKFNTAREEWLKQEKIAEEVTAEQITALVSSMTG 484

Query: 60  VAVAQ-------KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           + V+Q       K++  +  + + + V  +  +  V+E I +    L  P     S    
Sbjct: 485 IPVSQMLEGEASKLL-NMEDRIHERMVDQEEAVKAVAEAIRRSRAGLKDPRRPIGS---- 539

Query: 113 VILVVGVNGVGKT 125
             L +G  GVGKT
Sbjct: 540 -FLFLGPTGVGKT 551


>gi|134278611|ref|ZP_01765325.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei 305]
 gi|134250395|gb|EBA50475.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei 305]
          Length = 888

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ E L  +   +       +  ++E I      L  P       +PH V L+ G +G
Sbjct: 578 VLKLAETLAERVVGQ----PHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 627

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L++ +       +      F+ A           T +    +  G     
Sbjct: 628 VGKTETALA-LAETLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 676

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +  + +   V+++D   + H +             +   +       ++V+ + 
Sbjct: 677 QGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLT 736

Query: 238 DATTGQNALR 247
                +  ++
Sbjct: 737 SNVGSERVMQ 746


>gi|125623395|ref|YP_001031878.1| ATP-dependent Clp protease ATP-binding subunit clpE [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|146345395|sp|Q9S5Z2|CLPE_LACLM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpE
 gi|124492203|emb|CAL97132.1| ATP-dependent Clp protease ATP-binding subunit clpE [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|300070143|gb|ADJ59543.1| ATP-dependent Clp protease ATP-binding subunit clpE [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 748

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 88/241 (36%), Gaps = 48/241 (19%)

Query: 22  ASTSLKLKEGITD----IISSRRLDD-----------GVREELEDLLIRSDIGVAVAQKI 66
           +      K+ +TD    +I+ + ++             ++E+ +  LI           +
Sbjct: 389 SKLRELQKQEVTDEDMPVITEKDIEQIVEQKTQIPVGDLKEKEQTQLI----------NL 438

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
            ++L      +D +V +    +S+ I +  + L KP     S      L VG  GVGKT 
Sbjct: 439 ADDLKAHVIGQDEAVDK----ISKAIRRSRVGLGKPNRPIGS-----FLFVGPTGVGKTE 489

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
           +  +L+K++   G    +   D          +     + A  + +  G      A +  
Sbjct: 490 LAKQLAKEL--FGSSESMIRFDMS--------EYMEKHSVAKLIGAPPGYVGYEEAGQLT 539

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMA----GIGKMIRVLKRLDPHAPHSVLQVLDATTG 242
           ++ +     ++++D   + H + + M       G++     R        ++   +A TG
Sbjct: 540 ERVRRNPYSLILLDEIEKAHPDVMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSNAGTG 599

Query: 243 Q 243
           +
Sbjct: 600 K 600


>gi|120556262|ref|YP_960613.1| ATP-dependent metalloprotease FtsH [Marinobacter aquaeolei VT8]
 gi|120326111|gb|ABM20426.1| membrane protease FtsH catalytic subunit [Marinobacter aquaeolei
           VT8]
          Length = 647

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 25/170 (14%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           V     DV EL+  +  P    F       P  +L+VG  G GKT     L+K ++    
Sbjct: 161 VDEAKEDVKELVDFLRDP--SKFQRLGGRIPKGVLMVGPPGTGKT----LLAKAIAGEAK 214

Query: 141 KVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
               +   +                  +       S    +  +A KQ+      +  ID
Sbjct: 215 VPFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKKQSPCIIF-IDEID 258

Query: 201 TAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
             GR     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 259 AVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEGNEGVIVIAATNRPDVLD 308


>gi|219669810|ref|YP_002460245.1| cobyrinic acid ac-diamide synthase [Desulfitobacterium hafniense
           DCB-2]
 gi|219540070|gb|ACL21809.1| Cobyrinic acid ac-diamide synthase [Desulfitobacterium hafniense
           DCB-2]
          Length = 261

 Score = 36.4 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I V G  GVGKTT+ G L++ ++  G +V+    D
Sbjct: 3   IAVTGKGGVGKTTLSGTLARLLAADGYRVLAVDAD 37


>gi|330507667|ref|YP_004384095.1| carbon monoxide dehydrogenase accessory protein [Methanosaeta
           concilii GP-6]
 gi|328928475|gb|AEB68277.1| carbon monoxide dehydrogenase accessory protein [Methanosaeta
           concilii GP-6]
          Length = 258

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I + G  GVGKTT+ G L++  +  G  V+    D
Sbjct: 3   IAISGKGGVGKTTLAGTLARLFARDGYNVLAIDAD 37


>gi|327191857|gb|EGE58852.1| plasmid partitioning protein RepAc2 [Rhizobium etli CNPAF512]
          Length = 402

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 108 SHRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + +  VI VV    G GKTT    L++ ++  G +V+    D
Sbjct: 117 NEKLQVIAVVNFKGGSGKTTTAAHLAQHLALTGHRVLAVDLD 158


>gi|307564452|ref|ZP_07626993.1| ATP-dependent metallopeptidase HflB [Prevotella amnii CRIS 21A-A]
 gi|307346812|gb|EFN92108.1| ATP-dependent metallopeptidase HflB [Prevotella amnii CRIS 21A-A]
          Length = 692

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 25/177 (14%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           KDV+ Q       E I + L    K +       P   L++G  G GKT     L+K ++
Sbjct: 181 KDVAGQEGAKQEVEEIVEFLKNPGK-YTDLGGKIPAGALLIGPPGTGKT----LLAKAVA 235

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                   +   +                  +       S    + ++A ++A      +
Sbjct: 236 GEAGVPFFSMSGS---------------DFVEMFVGVGASRVRDVFHQAKEKAPCIIF-I 279

Query: 197 LIIDTAGRLHNNSI----LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             ID  GR  + +            +  +L  +D    +S + V+ AT   + L + 
Sbjct: 280 DEIDAVGRARSKNPSMGGNDERENTLNALLTEMDGFGTNSGVIVMAATNRVDMLDKA 336


>gi|237509259|ref|ZP_04521974.1| type VI secretion ATPase, ClpV1 family [Burkholderia pseudomallei
           MSHR346]
 gi|235001464|gb|EEP50888.1| type VI secretion ATPase, ClpV1 family [Burkholderia pseudomallei
           MSHR346]
          Length = 882

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ E L  +   +       +  ++E I      L  P       +PH V L+ G +G
Sbjct: 572 VLKLAETLAERVVGQ----PHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 621

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L++ +       +      F+ A           T +    +  G     
Sbjct: 622 VGKTETALA-LAETLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 670

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +  + +   V+++D   + H +             +   +       ++V+ + 
Sbjct: 671 QGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLT 730

Query: 238 DATTGQNALR 247
                +  ++
Sbjct: 731 SNVGSERVMQ 740


>gi|228991385|ref|ZP_04151340.1| Multidrug resistance ABC transporter, ATP-binding and permease
           component [Bacillus pseudomycoides DSM 12442]
 gi|228768315|gb|EEM16923.1| Multidrug resistance ABC transporter, ATP-binding and permease
           component [Bacillus pseudomycoides DSM 12442]
          Length = 563

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLY-DVSELIHKMLMPLSKPFNWDFSHRPH---VILVVG 118
             +I++E+   +  KD  V + L  +VS           K    D +   H    I +VG
Sbjct: 299 VFEIMDEVPEIQNKKDAIVVQNLKGNVSFEHVSFGYTKEKEILKDVNLHAHPGETIALVG 358

Query: 119 VNGVGKTTVIGKLSKKM 135
             G GKTTVI  L++  
Sbjct: 359 PTGSGKTTVINLLTRFY 375


>gi|218672474|ref|ZP_03522143.1| plasmid partitioning protein RepAc2 [Rhizobium etli GR56]
          Length = 226

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 108 SHRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + +  VI VV    G GKTT    L++ ++  G +V+    D
Sbjct: 113 NEKLQVIAVVNFKGGSGKTTTAAHLAQHLALTGHRVLAVDLD 154


>gi|218515883|ref|ZP_03512723.1| plasmid partitioning protein RepAc2 [Rhizobium etli 8C-3]
          Length = 377

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 108 SHRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + +  VI VV    G GKTT    L++ ++  G +V+    D
Sbjct: 113 NEKLQVIAVVNFKGGSGKTTTAAHLAQHLALTGHRVLAVDLD 154


>gi|190895314|ref|YP_001985607.1| plasmid partitioning protein RepAc2 [Rhizobium etli CIAT 652]
 gi|190700975|gb|ACE95057.1| plasmid partitioning protein RepAc2 [Rhizobium etli CIAT 652]
          Length = 402

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 108 SHRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + +  VI VV    G GKTT    L++ ++  G +V+    D
Sbjct: 117 NEKLQVIAVVNFKGGSGKTTTAAHLAQHLALTGHRVLAVDLD 158


>gi|157867051|ref|XP_001682080.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68125532|emb|CAJ03394.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 214

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 108 SHRPHVILVVGVNGVGKTTVIGKLSKKM 135
              P  +++ G  G GKTT+  KL+   
Sbjct: 48  RPTPLHVIITGPPGSGKTTLAAKLAAHY 75


>gi|78043296|ref|YP_360654.1| CO dehydrogenase/acetyl-CoA synthase complex, accessory protein
           CooC [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995411|gb|ABB14310.1| CO dehydrogenase/acetyl-CoA synthase complex, accessory protein
           CooC [Carboxydothermus hydrogenoformans Z-2901]
          Length = 268

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
              S +   I V G  GVGKTT+   LS   +  G +V+    D
Sbjct: 1   MQVSEKGLKIAVSGKGGVGKTTLSALLSHIFAREGKRVLAVDAD 44


>gi|34558233|ref|NP_908048.1| putative ATP/GTP-binding protein [Wolinella succinogenes DSM 1740]
 gi|34483952|emb|CAE10948.1| PUTATIVE ATP/GTP-BINDING PROTEIN (MRP HOMOLOG) [Wolinella
           succinogenes]
          Length = 370

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 84/255 (32%), Gaps = 35/255 (13%)

Query: 49  LEDLLIRSD---IGV-------AVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           ++  L+ +D   + +        V QK+  E+  K          ++ +  +   +    
Sbjct: 28  VQKALLENDTLHVAIKIPSGVPEVEQKLRAEITQKLAPLGAKNIDLVIEQPQAQEE--PK 85

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQL 158
              P N     +  V++  G  GVGK+T    L+  ++  G +V L   D +        
Sbjct: 86  PQGPKNIAPHIKNFVMVSSGKGGVGKSTSSVNLAIALAQQGKRVGLLDADIYGPN----- 140

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
                         ++ ++   L   +    +   + VL             L+     +
Sbjct: 141 --IPRMLGLTKERPDVNAEQKKLIPLSAYGVEMMSMGVLY-------EEGQSLIWRGPMI 191

Query: 219 IRVLKRLDPHAPHSVLQV----LDATTGQNALRQVEMFHAVAGTTGLIMTK--MDGTARG 272
           IR ++++      S L V    +   TG   L   +     AG T     +  +D + R 
Sbjct: 192 IRAIEQMLKDVLWSDLDVLVIDMPPGTGDAQLTLAQSVPVTAGVTVTTPQRVALDDSER- 250

Query: 273 GGLIPIVVTHKIPVY 287
              + +    KIP+ 
Sbjct: 251 --SLDMFKKLKIPIA 263


>gi|332360766|gb|EGJ38574.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Streptococcus sanguinis SK355]
          Length = 592

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 19/176 (10%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
           + +T +    +      + +  +L  +D +     +K+ ++L  +   KDV  Q  + D 
Sbjct: 305 QNLTQLAGQLQSAKSSLDRIFQVLDEADEVNDK-TEKLEQDLTGQVSFKDVDFQ-YVAD- 361

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                    PL + FN +      V  +VG  G GKTT+I  L +        + +   D
Sbjct: 362 --------KPLIRNFNLEVKPGEMV-AIVGPTGAGKTTLINLLMRFYDVTKGAITVDGHD 412

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEI------GSDAAALAYEAFKQAQAKKVDVLI 198
               +  D  K +       ++            +  A   E  + A+A  VD  I
Sbjct: 413 IRHLSRQDYRKQFGMVLQDAWLYEGTIKENLRFGNLQATDEEIVEAAKAANVDHFI 468


>gi|330945582|gb|EGH47091.1| ABC transporter, transmembrane region:ABC transporter [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 292

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 15/142 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAI------DQL 158
           + +VG NG GKTT+I  L++       +++L   D           R   I       Q 
Sbjct: 75  VALVGENGSGKTTLIKLLTRLYQPDQGRILLDGSDLQEWDEDALRSRIGVIFQDFIRYQF 134

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++  +    D             A +       +++D       GR       ++G    
Sbjct: 135 QVGENLGVGDTQAFHDEGRWREAAAQGMAAQFIEQLDKGYATQLGRWFAGGQELSGGQWQ 194

Query: 219 IRVLKRLDPHAPHSVLQVLDAT 240
              L R        +L + + T
Sbjct: 195 KIALSRAYMRRDADILILDEPT 216


>gi|327192756|gb|EGE59690.1| plasmid partitioning protein RepAd [Rhizobium etli CNPAF512]
          Length = 404

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             V+   G  G GKTT    L++ ++  G +V+    D
Sbjct: 122 VSVMNFKG--GSGKTTTAAHLAQYLAMRGYRVLAIDLD 157


>gi|326203205|ref|ZP_08193070.1| ABC transporter related protein [Clostridium papyrosolvens DSM
           2782]
 gi|325986463|gb|EGD47294.1| ABC transporter related protein [Clostridium papyrosolvens DSM
           2782]
          Length = 286

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 104 NWDFSHRPHVIL-VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           N  FS     I+ +VG NG GKTT I  +   +      + +   D+ 
Sbjct: 21  NISFSLPQGYIMGLVGPNGAGKTTTIKLMLNMLQKTSGDIEILGLDSV 68


>gi|255091959|ref|ZP_05321437.1| putative ABC transporter, permease/ATP-binding protein [Clostridium
           difficile CIP 107932]
 gi|255313694|ref|ZP_05355277.1| putative ABC transporter, permease/ATP-binding protein [Clostridium
           difficile QCD-76w55]
          Length = 594

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGV 119
                VEE+  +  +K +S+ +       +         L K  N + +     I +VG 
Sbjct: 325 TVMDEVEEIKDEESSKVISMPKGKVQFEHVKFGYSDDFILMKDININLNAG-DKIAIVGP 383

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVML 144
            G GKTT++  L +     G ++ +
Sbjct: 384 TGAGKTTLVNLLMRFYEIQGGRITI 408


>gi|218674283|ref|ZP_03523952.1| plasmid partitioning protein RepAb [Rhizobium etli GR56]
          Length = 326

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
             V+   G  G GKTT    L++ ++  G +V+    D
Sbjct: 44  VSVMNFKG--GSGKTTTAAHLAQYLAMRGYRVLAIDLD 79


>gi|260684840|ref|YP_003216125.1| putative type IV pilus-assembly protein [Clostridium difficile
           CD196]
 gi|260688498|ref|YP_003219632.1| putative type IV pilus-assembly protein [Clostridium difficile
           R20291]
 gi|260211003|emb|CBA66307.1| putative type IV pilus-assembly protein [Clostridium difficile
           CD196]
 gi|260214515|emb|CBE07022.1| putative type IV pilus-assembly protein [Clostridium difficile
           R20291]
          Length = 459

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 5/133 (3%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            K   + ++    L D  EL         K  N   + R  V+LV G  G GKTT +  L
Sbjct: 183 EKIVLRILNRDTFLKDKLEL--GFSEEAIKSINRIINKRAGVLLVTGPTGSGKTTTVYSL 240

Query: 132 SKKMSDAGLKVMLAAGDT-FRSAAIDQLKIWADRTSADFVCSEI--GSDAAALAYEAFKQ 188
              +      +M       ++   I Q+++ +    +  V        D   +     + 
Sbjct: 241 LNDLKGINKNIMTIENPVEYKMDGISQIQVNSKVGLSFDVGLRAILRQDPDIIMVGEIRD 300

Query: 189 AQAKKVDVLIIDT 201
           A+  K+ V    T
Sbjct: 301 AETAKIAVRAAIT 313


>gi|77641415|gb|ABB00551.1| I2 [Nicotiana tabacum]
          Length = 234

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIG------KLSKKMSDAGL 140
           +++ L+ ++L   +K        +  VI ++G+ GVGKTT+        K+ +       
Sbjct: 18  EINILVDRLLSDDAKE------KKLTVIPIIGMAGVGKTTLAKVVYNDEKVKQHFKLKSW 71

Query: 141 KVMLAAGDTFRSA 153
             +    D FR  
Sbjct: 72  ICVSEPYDVFRIT 84


>gi|72161597|ref|YP_289254.1| GTPase [Thermobifida fusca YX]
 gi|71915329|gb|AAZ55231.1| similar to GTPase [Thermobifida fusca YX]
          Length = 428

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
           + + K L  L +        R   I++ G  GVGKTT I  L         + + A GD 
Sbjct: 9   QEVEKFLEMLRQRGVQLPKQRKPNIVICGQTGVGKTTTINTL-------FGREVGAVGDF 61

Query: 150 FRSAAIDQLKIW 161
            R +  D L  W
Sbjct: 62  SRGSVTDTLYEW 73


>gi|126442624|ref|YP_001063945.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei 668]
 gi|126222115|gb|ABN85620.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei 668]
          Length = 888

 Score = 36.4 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ E L  +   +       +  ++E I      L  P       +PH V L+ G +G
Sbjct: 578 VLKLAETLAERVVGQ----PHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 627

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L++ +       +      F+ A           T +    +  G     
Sbjct: 628 VGKTETALA-LAETLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 676

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +  + +   V+++D   + H +             +   +       ++V+ + 
Sbjct: 677 QGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLT 736

Query: 238 DATTGQNALR 247
                +  ++
Sbjct: 737 SNVGSERVMQ 746


>gi|328479896|gb|EGF48968.1| signal recognition particle-docking protein FtsY [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 56

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 52  LLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVL-YDVSELIHKMLMPLSKP 102
           +LI SD+G   A ++ +EL  +   K+    + +   + E +  M     K 
Sbjct: 1   MLIESDVGFETAVRLSDELREEVKLKNAKDPKAVSRVIVEKLVDMYGEAGKG 52


>gi|320105107|ref|YP_004180698.1| ABC transporter-like protein [Isosphaera pallida ATCC 43644]
 gi|319752389|gb|ADV64149.1| ABC transporter related protein [Isosphaera pallida ATCC 43644]
          Length = 750

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 10/107 (9%)

Query: 97  MPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            P+ K       H    I +VG NG GK+T++  L++        + +   D   + A +
Sbjct: 523 EPILKGLTLQVRHGER-IALVGANGSGKSTLMALLARFHDVQEGAIRVDGVDLRDAVARE 581

Query: 157 QLKIWADRTSADF---------VCSEIGSDAAALAYEAFKQAQAKKV 194
             +     T             +       + A   EA K+A A   
Sbjct: 582 WRRQIGMVTQETVLFEGTIAANIAYGKPHASRAEIEEAAKRAYAHNF 628


>gi|297195323|ref|ZP_06912721.1| gluconokinase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719595|gb|EDY63503.1| gluconokinase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 170

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           PHV++V+GV G GKTT+   L+  +      V  A GD F   A
Sbjct: 5   PHVVVVMGVAGTGKTTIGPLLAAAL-----GVPYAEGDDFHPPA 43


>gi|168983732|emb|CAQ07777.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
          Length = 653

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNITYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|125975477|ref|YP_001039387.1| ABC transporter related protein [Clostridium thermocellum ATCC
           27405]
 gi|256004234|ref|ZP_05429217.1| ABC transporter related protein [Clostridium thermocellum DSM 2360]
 gi|281419489|ref|ZP_06250503.1| ABC transporter related protein [Clostridium thermocellum JW20]
 gi|125715702|gb|ABN54194.1| ABC transporter related protein [Clostridium thermocellum ATCC
           27405]
 gi|255991824|gb|EEU01923.1| ABC transporter related protein [Clostridium thermocellum DSM 2360]
 gi|281406895|gb|EFB37159.1| ABC transporter related protein [Clostridium thermocellum JW20]
 gi|316939599|gb|ADU73633.1| ABC transporter related protein [Clostridium thermocellum DSM 1313]
          Length = 575

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 104 NWDFSHRP-HVILVVGVNGVGKTTVIGKLSKKM 135
           N  F+ +P  +I +VG  GVGK+TVI  +++  
Sbjct: 355 NISFTAKPGQMIALVGPTGVGKSTVISLIARFY 387


>gi|86749042|ref|YP_485538.1| putative ABC transporter ATP-binding protein [Rhodopseudomonas
           palustris HaA2]
 gi|86572070|gb|ABD06627.1| ABC transporter related [Rhodopseudomonas palustris HaA2]
          Length = 549

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 11/70 (15%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMP---LSKPF-------NWDFSHRPHVIL-V 116
           +ELL K   K     +++  V+E +   ++    L+K F       +  F   P  I+ V
Sbjct: 289 DELLAKASEKQTQTAQIIIPVAERLGNNVVEFDHLTKGFGDKLLIDDLTFKLPPGGIVGV 348

Query: 117 VGVNGVGKTT 126
           +G NG GKTT
Sbjct: 349 IGPNGAGKTT 358


>gi|39996908|ref|NP_952859.1| cell division protein FtsH [Geobacter sulfurreducens PCA]
 gi|39983796|gb|AAR35186.1| cell division protein FtsH [Geobacter sulfurreducens PCA]
          Length = 614

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   +   +DV+      +  E I + L    K F       P  +L+VG  G GK
Sbjct: 145 KLLTEAQGRVTFEDVAGVDEAKEELEEIIQFLKD-PKKFTKLGGRIPKGVLLVGPPGTGK 203

Query: 125 T 125
           T
Sbjct: 204 T 204


>gi|114562972|ref|YP_750485.1| recombination factor protein RarA [Shewanella frigidimarina NCIMB
           400]
 gi|114334265|gb|ABI71647.1| Recombination protein MgsA [Shewanella frigidimarina NCIMB 400]
          Length = 443

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 79  VSVQRVLYDVSELI-HKMLMPLSKPFNWDF-SHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           ++ +    D+SE I    L+   KP      ++R H +L+ G  G GKTT+   ++   +
Sbjct: 15  LAARMRPRDISEYIGQAHLLGEGKPLRKALEANRAHSMLLWGPPGTGKTTLAELIAHYAN 74

Query: 137 DAGLKVMLAAGDTFRS-AAIDQLKIWADRTS 166
               ++           AAI+Q K  A    
Sbjct: 75  AHVERISAVTSGVKDIRAAIEQAKAIAQSRG 105


>gi|320527021|ref|ZP_08028210.1| ABC transporter, ATP-binding protein [Solobacterium moorei F0204]
 gi|320132606|gb|EFW25147.1| ABC transporter, ATP-binding protein [Solobacterium moorei F0204]
          Length = 520

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 64  QKIVEELLTKRYAK-----DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVG 118
            +++E+ + K   +       +  RV+++  +L+     PLSKP ++    +  VIL  G
Sbjct: 301 MELIEKSIEKPKPEFSFRTARTPGRVIFETKQLVIGYDTPLSKPLDFLVERKEKVIL-SG 359

Query: 119 VNGVGKTT 126
            NG+GKTT
Sbjct: 360 ANGIGKTT 367


>gi|311694246|gb|ADP97119.1| cell division protein FtsH [marine bacterium HP15]
          Length = 637

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 55/189 (29%), Gaps = 30/189 (15%)

Query: 71  LTKRYAKDVSVQ-----RVLYDVSELIHKMLMPLSKPFNWDFSHR--PHVILVVGVNGVG 123
             +R  K+ S         +      I +++  L  P  +       P  +L+VG  G G
Sbjct: 176 KARRAHKETSTATLDDVAGIESAKREIAEIIDFLKSPEKYRALGAVMPKGVLLVGPPGTG 235

Query: 124 KTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAY 183
           KT     L++ ++                A +    I A      FV             
Sbjct: 236 KT----LLARAIAGE--------------AEVPFYSISASEFIEMFVGVGAARVRDMFKE 277

Query: 184 EAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
                     +D L  D  GR     +          + ++L  +D    H  + VL AT
Sbjct: 278 ARKDAPALIFIDEL--DAIGRSRGAGLGGGHDEREQTLNQILTEMDGFEAHENVLVLAAT 335

Query: 241 TGQNALRQV 249
              + L   
Sbjct: 336 NRPDVLDSA 344


>gi|307315820|ref|ZP_07595331.1| ABC transporter related protein [Sinorhizobium meliloti BL225C]
 gi|307322582|ref|ZP_07601923.1| ABC transporter related protein [Sinorhizobium meliloti AK83]
 gi|306891773|gb|EFN22618.1| ABC transporter related protein [Sinorhizobium meliloti AK83]
 gi|306898529|gb|EFN29205.1| ABC transporter related protein [Sinorhizobium meliloti BL225C]
          Length = 249

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
           V  ++G NG GKTTV   L+K +      + L   D  R+A 
Sbjct: 30  VHALIGPNGAGKTTVFNLLTKFLQPTHGTITLLGEDITRTAP 71


>gi|302187504|ref|ZP_07264177.1| ABC transporter, transmembrane region:ABC transporter [Pseudomonas
           syringae pv. syringae 642]
          Length = 603

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 15/142 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAI------DQL 158
           + +VG NG GKTT+I  L++       +++L   D           R   I       Q 
Sbjct: 386 VALVGENGSGKTTLIKLLTRLYQPDQGRILLDGSDLQEWDEDALRSRIGVIFQDFIRYQF 445

Query: 159 KIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
           ++  +    D             A +       +++D       GR       ++G    
Sbjct: 446 QVGENLGVGDTQAFHDEGRWREAAAQGMAAQFIEQLDKGYATQLGRWFAGGQELSGGQWQ 505

Query: 219 IRVLKRLDPHAPHSVLQVLDAT 240
              L R        +L + + T
Sbjct: 506 KIALSRAYMRRDADILILDEPT 527


>gi|241258678|ref|YP_002978562.1| plasmid partitioning protein RepA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863148|gb|ACS60811.1| plasmid partitioning protein RepA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 398

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 106 DFSHRPHVILVVGV-NGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
               +  VI VV    G GKTT    L++ ++  G +V+    D
Sbjct: 112 KPGDKLQVIAVVNFKGGSGKTTTTAHLAQHLALTGHRVLAIDLD 155


>gi|195387513|ref|XP_002052440.1| GJ21636 [Drosophila virilis]
 gi|194148897|gb|EDW64595.1| GJ21636 [Drosophila virilis]
          Length = 641

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 54/197 (27%), Gaps = 37/197 (18%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
            I+ EL        V  +R    +++L+                         G  G GK
Sbjct: 368 DILSELQNIEKVNGVKWKRF-PVLNKLLRGHRKGELTILT-------------GPTGSGK 413

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAI--------------DQLKIWADRTS-- 166
           TT   + S  ++  G+  +  + +    R AA                + + WA      
Sbjct: 414 TTFTSEYSLDLAMQGVSTLWGSFEIRNTRLAATLLRQFVGYPLDDKLQEFEHWATEFDRL 473

Query: 167 ADFVCSEIGSDAAALAYEAFKQAQAKK-VDVLIID----TAGRLHNNSILMAGIGKMIRV 221
             +  +  G        EA + AQ    +  +IID      G              +I  
Sbjct: 474 PMYFMTFQGQQPLKPVLEAIEHAQYVHDISHVIIDNLQFMMGVSSYRGDKFWEQDSIIAA 533

Query: 222 LKRLDPHAPHSVLQVLD 238
            +         V  V+ 
Sbjct: 534 FRGFATKHNVHVTLVMH 550


>gi|168983733|emb|CAQ07778.1| transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) [Homo
           sapiens]
          Length = 686

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNITYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|120602174|ref|YP_966574.1| cobyrinic acid a,c-diamide synthase [Desulfovibrio vulgaris DP4]
 gi|120562403|gb|ABM28147.1| Cobyrinic acid a,c-diamide synthase [Desulfovibrio vulgaris DP4]
          Length = 301

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 3/76 (3%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK---IWADRTSADFVCSEI 174
           G  G GKTTV   L+   +  GL V L   D     A   +                 + 
Sbjct: 8   GKGGTGKTTVAVNLAASYAMQGLPVTLVDCDVEEPNAHLFVDARWQVRSLCGVPVPAIDP 67

Query: 175 GSDAAALAYEAFKQAQ 190
                       +  +
Sbjct: 68  DRCLGESCRRCVEACR 83


>gi|89885874|ref|YP_516072.1| hypothetical protein Rfer_4388 [Rhodoferax ferrireducens T118]
 gi|89347872|gb|ABD72074.1| hypothetical protein Rfer_4388 [Rhodoferax ferrireducens T118]
          Length = 193

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ------LKIWADRTSA 167
           +L++G+ G GKTT+  +L   +    L V     D  R+ A D        +  A R   
Sbjct: 4   VLIMGLPGAGKTTLSIELIGLLKMNRLSVGYLCADNVRAEANDWDFTTEGRRRQARRMQI 63

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDV-LIIDT--AGRL 205
                +             +   A   DV + +DT   GR 
Sbjct: 64  KVNELQGDVVIVDALAALPESRAAIGADVLVWMDTTKTGRY 104


>gi|157818293|ref|NP_001099644.1| methylmalonic aciduria (cobalamin deficiency) cblA type [Rattus
           norvegicus]
 gi|149037953|gb|EDL92313.1| methylmalonic aciduria (cobalamin deficiency) cblA type
           (predicted), isoform CRA_a [Rattus norvegicus]
 gi|149037954|gb|EDL92314.1| methylmalonic aciduria (cobalamin deficiency) cblA type
           (predicted), isoform CRA_a [Rattus norvegicus]
          Length = 415

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 48/233 (20%)

Query: 64  QKIVEEL-----------LTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH 112
           Q+ V+ L           L +      S      ++++++ + ++   +        +P 
Sbjct: 80  QRFVDRLYMGLVQGQRACLAEAITLVESTHTRKKELAQVLLQRVLAHQRERELQNHGKPF 139

Query: 113 VILV--VGVNGVGKTTVI---GKLSKKMSDAGLKVMLAAGDTFR-------SAAIDQLKI 160
              V   G  G GK+T I   GK+   +++ G ++ + A D               ++  
Sbjct: 140 TFRVGLSGPPGAGKSTFIECFGKM---LTERGHRLSVLAVDPSSCTSGGSLLGDKTRMTE 196

Query: 161 WADRTSADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +   +A    S        +     EA    +    D+++I+T G   +          
Sbjct: 197 LSRDMNAYIRPSPTSGTLGGVTRTTNEAIVLCEGGGYDIILIETVGVGQSE--------- 247

Query: 218 MIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEM-FHAVAGTTGLIMTKMDGT 269
                           + +L    G + L+ ++     +A    +++TK DG 
Sbjct: 248 ------FAVADMVDMFVLLLPP-AGGDELQGIKRGIIEMADL--VVITKSDGD 291


>gi|242091684|ref|XP_002436332.1| hypothetical protein SORBIDRAFT_10g000600 [Sorghum bicolor]
 gi|71089841|gb|AAZ23777.1| plastid division regulator MinD [Sorghum bicolor]
 gi|241914555|gb|EER87699.1| hypothetical protein SORBIDRAFT_10g000600 [Sorghum bicolor]
          Length = 312

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 111 PHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           P V++V  G  GVGKTT    L+  ++  GL  +    D
Sbjct: 43  PRVVVVTSGKGGVGKTTTTANLAASLARLGLPAVAVDAD 81


>gi|53803870|ref|YP_114285.1| cell division protein FtsH [Methylococcus capsulatus str. Bath]
 gi|53757631|gb|AAU91922.1| cell division protein FtsH [Methylococcus capsulatus str. Bath]
          Length = 638

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++EE   K    DV+      +    +   L   SK F       P   L+VG  G GK
Sbjct: 143 RLIEEDQVKVTFADVAGADEAKEDVAEMVDFLKDPSK-FQKLGGKIPRGALMVGPPGTGK 201

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L++ ++        +   +                  +       S    +  +
Sbjct: 202 T----LLARAIAGEARVPFFSISGS---------------DFVEMFVGVGASRVRDMFEQ 242

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D       + V+ AT 
Sbjct: 243 AKKHAPCIIF-IDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFEGTEGIIVIAATN 301

Query: 242 GQNALR 247
             + L 
Sbjct: 302 RPDVLD 307


>gi|72161158|ref|YP_288815.1| ATP-binding protein [Thermobifida fusca YX]
 gi|71914890|gb|AAZ54792.1| putative ATP-binding protein [Thermobifida fusca YX]
          Length = 324

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I  VG  G GKTT+    S+ ++  G+ V+    D
Sbjct: 3   IAFVGKGGSGKTTLSALFSRYLAHCGVPVVAIDAD 37


>gi|46580509|ref|YP_011317.1| iron-sulfur cluster-binding/ATPase domain-containing protein
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46449928|gb|AAS96577.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234249|gb|ADP87103.1| cobyrinic acid ac-diamide synthase [Desulfovibrio vulgaris RCH1]
          Length = 301

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 3/76 (3%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK---IWADRTSADFVCSEI 174
           G  G GKTTV   L+   +  GL V L   D     A   +                 + 
Sbjct: 8   GKGGTGKTTVAVNLAASYAMQGLPVTLVDCDVEEPNAHLFVDARWQVRSLCGVPVPAIDP 67

Query: 175 GSDAAALAYEAFKQAQ 190
                       +  +
Sbjct: 68  DRCLGESCRRCVEACR 83


>gi|402209|emb|CAA80523.1| TAP2E [Homo sapiens]
          Length = 686

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRNNITYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|94311007|ref|YP_584217.1| ATP-dependent helicase HrpA [Cupriavidus metallidurans CH34]
 gi|93354859|gb|ABF08948.1| ATP-dependent helicase [Cupriavidus metallidurans CH34]
          Length = 1316

 Score = 36.4 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 49/169 (28%), Gaps = 23/169 (13%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKM----SDAGLKVMLAAGDTF--RSAAIDQLKIWA 162
               VI+V G  G GKTT + K++  +    +  G       G T   R AA    K  A
Sbjct: 82  QANQVIIVSGETGSGKTTQLPKIALSIGRGPAREGKPGGGLIGHTQPRRIAATSTAKRIA 141

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVL 222
                    +            A    +     +L+ +T                ++R  
Sbjct: 142 QELGTPLGETVGYQVRFNDTMSAGASVKLMTDGILLAET------------QNDPLLRAY 189

Query: 223 KRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTAR 271
             +     H     +D   G   LRQ+            I+T     A+
Sbjct: 190 DTIIIDEAHERSLNIDFLIGY--LRQILPKRPDLKV---IITSATIDAK 233


>gi|317488157|ref|ZP_07946731.1| ABC transporter [Eggerthella sp. 1_3_56FAA]
 gi|316912744|gb|EFV34279.1| ABC transporter [Eggerthella sp. 1_3_56FAA]
          Length = 639

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 13/111 (11%)

Query: 92  IHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFR 151
           +H++L  L        +     + +VG +G GKTT    L +        V +   D  R
Sbjct: 406 VHEVLRGLDLAIPAGAT-----VALVGPSGGGKTTTCSLLPRFYDPERGSVEIDGIDI-R 459

Query: 152 SAAIDQLKIWADRTSADFVCSE-------IGSDAAALAYEAFKQAQAKKVD 195
           +  ++ L+        D                  A   E  + A+   +D
Sbjct: 460 AVTVESLRDAIGIVQQDVYLFGGTIRDNIAYGRPDATTAEIVEAAKRANID 510


>gi|317470396|ref|ZP_07929786.1| ferrous iron transporter B [Anaerostipes sp. 3_2_56FAA]
 gi|316902124|gb|EFV24048.1| ferrous iron transporter B [Anaerostipes sp. 3_2_56FAA]
          Length = 712

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 9/139 (6%)

Query: 165 TSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKR 224
            +   +    G+        A    + +    +++D  G     +               
Sbjct: 44  NNLTGMRQHTGNWPGKTVANAQGYCRTENNSYVMVDIPGTYSLLAHSAEEEV----ARNF 99

Query: 225 LDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMDGTARGGGLI---PIVVT 281
           +    P +V+ V DA   +  L  V     +     + +  MD   + G  I    I   
Sbjct: 100 ICFEKPDAVIVVCDACCLERNLNLVLQTMEITDRVVVCVNLMDEAEKKGITIDVRAISEK 159

Query: 282 HKIPVYFLG--VGEGINDL 298
             +PV       GEG+ +L
Sbjct: 160 LGVPVVAAAARSGEGLAEL 178


>gi|312984176|ref|ZP_07791522.1| phage nucleotide-binding protein [Lactobacillus crispatus CTV-05]
 gi|310894395|gb|EFQ43471.1| phage nucleotide-binding protein [Lactobacillus crispatus CTV-05]
          Length = 224

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 14/95 (14%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT 165
           +     +  LV GV GVGKTT    LSK +   G   +L+  ++FR     +++ W D+ 
Sbjct: 8   NAPKENYRWLVYGVPGVGKTT----LSKYLK--GKTYLLSLDNSFR-----RIQFWQDKK 56

Query: 166 SADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIID 200
               +     +       +  +     + D L+ID
Sbjct: 57  DIWVI---DPNKPIEDLNQFVEFFDPSQYDNLVID 88


>gi|302542801|ref|ZP_07295143.1| LigA protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302460419|gb|EFL23512.1| LigA protein [Streptomyces himastatinicus ATCC 53653]
          Length = 1246

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 70/213 (32%), Gaps = 14/213 (6%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL- 131
           +   ++V     +   S  +  +     +  +         +++ G  G+GK+  I +L 
Sbjct: 298 RALFREVPSAAGVRGRSRELTALRERFEREPDAGTVR----VVMSGFGGIGKS-SIARLY 352

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           + +  DA   V     DT      D L  +    + +   +   S+   LA    + A  
Sbjct: 353 AHRYRDAYEFVWWIPSDTR----EDVLAAYRRMVAEERQETGAASEEETLAQIGSRLAHL 408

Query: 192 KKVDVLIIDT-AGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVE 250
               +LI D  A R     +L A  G  +    R    A      V++  T   A     
Sbjct: 409 GPRLLLIYDNVADREQLQGLLPACDGAHVLTTTRDSAWAAAESGLVVERMTADEA--TTW 466

Query: 251 MFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHK 283
               + G +G  ++ +   A  G  + I     
Sbjct: 467 TGERLPGASGDEVSAL-VDAVEGIPLAIAQATG 498


>gi|300175321|emb|CBK20632.2| Arginine/ornithine transport system ATPase [Blastocystis hominis]
          Length = 388

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 32/195 (16%)

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHV-----ILVVGVNGVGKTTVIGKLSKKMSDAGLKVM 143
           +EL+   ++ + +  N  +  +  V     + + G  G GK+T    L   ++  G +V 
Sbjct: 81  AELLLDYVLSVRRMENEKYHPKQFVPGSFRLGIAGPPGAGKSTFCEALGTLLTSQGHRVA 140

Query: 144 LAAGD--TFRSAAI-----DQLKIWADRTSADFVCSEIGSDAAALAYEA---FKQAQAKK 193
           + A D  + RS         ++   A   +A    S        +A          +A  
Sbjct: 141 VLAIDPSSTRSGGSLLGDKTRMLKLAYDPNAFVRPSPSNCSLGGVAEHTSDLVMLCEAAG 200

Query: 194 VDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFH 253
            D++I++T G   +                 +       V+ ++    G     + +   
Sbjct: 201 YDIVIVETVGLGQSE---------------VMIDDMVDMVMLLMPPAMGDELQGEKKGIM 245

Query: 254 AVAGTTGLIMTKMDG 268
             A    +++ K DG
Sbjct: 246 EHADI--VVINKADG 258


>gi|293363759|ref|ZP_06610501.1| ABC transporter, ATP-binding protein [Mycoplasma alligatoris
           A21JP2]
 gi|292552680|gb|EFF41448.1| ABC transporter, ATP-binding protein [Mycoplasma alligatoris
           A21JP2]
          Length = 608

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 11/71 (15%)

Query: 66  IVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRP-HVILVVGVNGVGK 124
            ++E+      KDV  +               P  + FN  F+ +P   I +VG  G GK
Sbjct: 361 FIDEIKGLIEFKDVCFKYNTK----------SPKFQLFNATFNAKPGQKIAIVGPTGAGK 410

Query: 125 TTVIGKLSKKM 135
           TT+I  L+K  
Sbjct: 411 TTIINLLTKFY 421


>gi|282163632|ref|YP_003356017.1| putative ATP-dependent DNA helicase [Methanocella paludicola SANAE]
 gi|282155946|dbj|BAI61034.1| putative ATP-dependent DNA helicase [Methanocella paludicola SANAE]
          Length = 1087

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 114 ILVVGVNGVGKTTVI-GKLSKKMSDAGLKVMLAAGDTF-RSAA 154
           ILVV   G GKTT+I  K +  + +  LK       TF R AA
Sbjct: 35  ILVVAGAGTGKTTMITAKAAYLIKEKKLKPERLIMLTFSREAA 77


>gi|261326776|emb|CBH09749.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 280

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 24/145 (16%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           + ++V+G  G GK+T+   +++  +  G    +   D     A ++L+        D + 
Sbjct: 4   YAVVVIGPAGSGKSTLCCTIAEHYATKGRSTHICNFD----PAAEELRYSPSIDVRDLIS 59

Query: 172 SEIGSDAAAL--------AYEAFKQAQAKKV---------DVLIIDTAGRLHNNSILMAG 214
            E   +   L          E    A  + +         D +IID  G++   S + A 
Sbjct: 60  LEDAMEGKGLGPNGGLVFCMEYLLSAGEQWICEQLGDHAEDFIIIDMPGQVEVLSHVPA- 118

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDA 239
           +   +R+L+R+       VL +LDA
Sbjct: 119 VPNFVRLLQRV--GYNVVVLFLLDA 141


>gi|261821460|ref|YP_003259566.1| ABC transporter [Pectobacterium wasabiae WPP163]
 gi|261605473|gb|ACX87959.1| ABC transporter related protein [Pectobacterium wasabiae WPP163]
          Length = 572

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 8/112 (7%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ +  +        V   VG +G GKTT+   L +        + +   D      I Q
Sbjct: 347 PILRNIDLSIRAGETV-AFVGPSGAGKTTLCSLLPRFYDLTNGSITIDGMD------IRQ 399

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +   + R+    V  ++      +  E     +    D  I++ A R   + 
Sbjct: 400 MMQASLRSQIGIVQQDVFLFGGTI-RENIAYGKLGAHDDEIMEAARRARLDE 450


>gi|311114326|ref|YP_003985547.1| cell division protein FtsH [Gardnerella vaginalis ATCC 14019]
 gi|310945820|gb|ADP38524.1| cell division protein FtsH [Gardnerella vaginalis ATCC 14019]
          Length = 751

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 64/188 (34%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++E    K    DV+ ++   +  E I + L   S+ +    +  P  +L+ G  G GK
Sbjct: 231 KLLEGQTPKTKFADVAGEQSAVEEVEEIKEFLKDPSR-YKALGARIPRGVLLYGPPGTGK 289

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L++ ++        A   +                  +       S    L  E
Sbjct: 290 T----LLARAIAGEAGVPFYAMAGS---------------DFVEMFVGLGASRVRELFDE 330

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A A    +  ID  GR   + +          + ++L  +D     + L ++ AT 
Sbjct: 331 AKKNAPAIIF-IDEIDAVGRRRGSGMTGGHDEREQTLNQLLVEMDGFDNDTNLIIIAATN 389

Query: 242 GQNALRQV 249
             + L   
Sbjct: 390 RPDVLDSA 397


>gi|293331121|ref|NP_001167965.1| hypothetical protein LOC100381681 [Zea mays]
 gi|223945183|gb|ACN26675.1| unknown [Zea mays]
          Length = 315

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 111 PHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           P V++V  G  GVGKTT    L+  ++  GL  +    D
Sbjct: 41  PRVVVVTSGKGGVGKTTTTANLAASLARLGLPAVAVDAD 79


>gi|224105927|ref|XP_002313981.1| predicted protein [Populus trichocarpa]
 gi|222850389|gb|EEE87936.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 12/127 (9%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV--- 170
           I++VG+   GKT    KL++ +   G          +R     +LK      SADF    
Sbjct: 99  IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR-----RLK-HGANQSADFFRAD 152

Query: 171 ---CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
                E  ++ AALA +       +   V I D          ++  + +    +  L+ 
Sbjct: 153 NPEGMEARNEVAALAMDDMIAWMQEGGQVGIFDATNSTRKRRNMLMKMAEGKCKIIFLET 212

Query: 228 HAPHSVL 234
                 +
Sbjct: 213 LCNDEHI 219


>gi|190573117|ref|YP_001970962.1| putative pilus retraction protein [Stenotrophomonas maltophilia
           K279a]
 gi|190011039|emb|CAQ44648.1| putative pilus retraction protein [Stenotrophomonas maltophilia
           K279a]
          Length = 380

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 41/143 (28%), Gaps = 25/143 (17%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +IL VG  G GK+T    L+      +      +   +      I+ +            
Sbjct: 132 IILFVGATGTGKSTS---LAAMIGYRNQNSTGHIITIED----PIEFVHKHEGCIITQRE 184

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                    A      +QA     DV++I   G +     +   I               
Sbjct: 185 VGIDTDSWEAALKNTLRQAP----DVIMI---GEVRTREGMDHAIAF---------AETG 228

Query: 231 HSVLQVLDATTGQNALRQVEMFH 253
           H VL  L A     A+ ++  F 
Sbjct: 229 HLVLCTLHANNANQAMDRIVNFF 251


>gi|170079249|ref|YP_001735887.1| CobW/P47K family protein [Synechococcus sp. PCC 7002]
 gi|169886918|gb|ACB00632.1| CobW/P47K family protein [Synechococcus sp. PCC 7002]
          Length = 381

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 11/173 (6%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDA-GLKVMLAAGDTFRSAAID 156
           P +   +   S  P  I + G  G GKTT    L+  +S+  GLK  +   +       +
Sbjct: 9   PGADTLDASKSGLPVTI-ITGFLGSGKTT---LLNHILSNQEGLKTAVLVNEFGEIGIDN 64

Query: 157 QLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKK--VDVLIIDTAGRLHNNSILMAG 214
           +L +  +    +     +          A  +   +   +D L+++T G      + +  
Sbjct: 65  ELIVTTEDNMVELSNGCVCCTINEDLVNAVHKILDRGDKIDYLVVETTGLADPLPVALTF 124

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
           +G  +R L RLD      V  V  A    +       +  +A    +++ K D
Sbjct: 125 LGTELRDLTRLDS----IVTMVDCANFSLDLFNSEAAYSQIAYGDIIVLNKTD 173


>gi|149052386|gb|EDM04203.1| rCG33319 [Rattus norvegicus]
          Length = 417

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 71/193 (36%), Gaps = 8/193 (4%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           E+ TK  ++++            + + +  +S   + D    P  I V+G  G GK+++I
Sbjct: 29  EMKTKILSQELITFIESSLEGGNLRETVSAISDALS-DIEKAPLNIAVIGETGAGKSSLI 87

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
              + +   A  +   A      + +      +                 A   ++  K+
Sbjct: 88  N--ALQGVGADKEGTAAPTGVVHTTSERTPYTYTKFPCVTLWDLPGIGSPAFQPHDYLKK 145

Query: 189 AQAKKVDVLIIDTAGRL-HNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT----TGQ 243
            + ++ D  II ++GR  HN++ L   I +M R    +  H    ++ V  +       +
Sbjct: 146 IKFEEYDFFIIVSSGRFKHNDAELAKAIVQMNRSFYFVRTHIDLDLMVVKLSAPKRFDKE 205

Query: 244 NALRQVEMFHAVA 256
           N L ++    +  
Sbjct: 206 NILEEILNSISSI 218


>gi|119715900|ref|YP_922865.1| ABC transporter related [Nocardioides sp. JS614]
 gi|119536561|gb|ABL81178.1| ABC transporter related protein [Nocardioides sp. JS614]
          Length = 316

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAA 154
            +G NG GKTT I  L   +  +G +V L  GD +R AA
Sbjct: 47  FLGPNGAGKTTTIRVLLGLLRASGGRVSLLGGDPWREAA 85


>gi|72386569|ref|XP_843709.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175744|gb|AAX69872.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70800241|gb|AAZ10150.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 280

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 24/145 (16%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           + ++V+G  G GK+T+   +++  +  G    +   D     A ++L+        D + 
Sbjct: 4   YAVVVIGPAGSGKSTLCCTIAEHYATKGRSTHICNFD----PAAEELRYSPSIDVRDLIS 59

Query: 172 SEIGSDAAAL--------AYEAFKQAQAKKV---------DVLIIDTAGRLHNNSILMAG 214
            E   +   L          E    A  + +         D +IID  G++   S + A 
Sbjct: 60  LEDAMEGKGLGPNGGLVFCMEYLLSAGEQWICEQLGDHAEDFIIIDMPGQVEVLSHVPA- 118

Query: 215 IGKMIRVLKRLDPHAPHSVLQVLDA 239
           +   +R+L+R+       VL +LDA
Sbjct: 119 VPNFVRLLQRV--GYNVVVLFLLDA 141


>gi|5748667|emb|CAB53105.1| cell division inhibitor MinD [Prototheca wickerhamii]
          Length = 359

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV-GVNGV 122
           +++++E   +R      +++++   SE  +   + +           P VI++  G  GV
Sbjct: 46  EQLIKEKPEERKIIKEQLEQLIQKPSESEYNTELDIELDKGDSDELEPRVIVITSGKGGV 105

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGD 148
           GKTT    L   ++  G +V L   D
Sbjct: 106 GKTTTTANLGMSIARFGYRVALIDAD 131


>gi|11465515|ref|NP_045094.1| cell division protein [Cyanidium caldarium]
 gi|14423719|sp|O19922|FTSH_CYACA RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|2465738|gb|AAB82667.1| unknown [Cyanidium caldarium]
          Length = 614

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 24/184 (13%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           E  T    +DV+      +  + I   L   S+ F    +  P  +L+VG  G GKT   
Sbjct: 163 EAKTGIVFEDVAGIEEAKEELQEIVAFLKD-SRKFTNVGATIPKGVLLVGPPGTGKT--- 218

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+K ++        +   +                  +       S    L  +A ++
Sbjct: 219 -LLAKAIAGEASAPFFSISGS---------------EFVEMFVGVGASRVRDLFKKAKEK 262

Query: 189 AQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNA 245
           A      +  ID  GR                + ++L  +D  +  + + V+ AT   + 
Sbjct: 263 APCIVF-IDEIDAVGRQRGVGIGGGNDEREQTLNQLLTEMDGFSGDTGVIVVAATNRIDV 321

Query: 246 LRQV 249
           L   
Sbjct: 322 LDSA 325


>gi|332304918|ref|YP_004432769.1| phytochrome sensor protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172247|gb|AEE21501.1| putative phytochrome sensor protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 736

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 95  MLMPLSKPFNWDFSHRPHVIL-VVGVNGVGKTTVI 128
            L P +         +PH IL VVG  G GKTT +
Sbjct: 463 NLSPANNKSITRMIDKPHGILLVVGPTGSGKTTTL 497


>gi|311244314|ref|XP_003121412.1| PREDICTED: hypothetical protein LOC100514503 [Sus scrofa]
          Length = 496

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
            P  + +VG    GKTT+   L+K     
Sbjct: 4   PPFKVFIVGPQSSGKTTLSNLLAKHYKGK 32


>gi|307330874|ref|ZP_07610008.1| ABC transporter related protein [Streptomyces violaceusniger Tu
           4113]
 gi|306883499|gb|EFN14551.1| ABC transporter related protein [Streptomyces violaceusniger Tu
           4113]
          Length = 337

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI 155
           V   +G NG GKTT IG L+ +++  G +  +   D  R  A+
Sbjct: 40  VFGFLGPNGAGKTTTIGILTTRVAPTGGRAFVQGVDVVRRPAV 82


>gi|260913936|ref|ZP_05920410.1| ATP-dependent metallopeptidase HflB [Pasteurella dagmatis ATCC
           43325]
 gi|260632023|gb|EEX50200.1| ATP-dependent metallopeptidase HflB [Pasteurella dagmatis ATCC
           43325]
          Length = 639

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 27/167 (16%)

Query: 87  DVSELIHKMLMPLSKPFNWD--FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L  P  +       P  IL+VG  G GKT     L+K ++        
Sbjct: 157 EAKEEVGEIVDFLRDPGKFQKLGGKIPKGILMVGPPGTGKT----LLAKAIAGEAKVPFF 212

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQA-QAKKVDVLIIDTAG 203
               +                  +       S    +  +A K A     +D   ID  G
Sbjct: 213 TISGS---------------DFVEMFVGVGASRVRDMFEQAKKNAPCLIFIDE--IDAVG 255

Query: 204 RLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
           R     +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 256 RQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLD 302


>gi|238756553|ref|ZP_04617854.1| Cobyrinic acid a,c-diamide synthase [Yersinia ruckeri ATCC 29473]
 gi|238705237|gb|EEP97653.1| Cobyrinic acid a,c-diamide synthase [Yersinia ruckeri ATCC 29473]
          Length = 208

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 114 ILVVGVN--GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC 171
           I+V+G    GVGK+T+   +   + + G  VM+   D       DQ  + +     D   
Sbjct: 2   IIVIGSQKGGVGKSTLAVNIGGYLLEKGHSVMIVDAD-------DQQSVMSWYNDRDEGR 54

Query: 172 SEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             +   +A+   +       K  D +I DTAGR    
Sbjct: 55  QRLPVVSASGNIKNTLFELDKHYDYVIADTAGRDSQE 91


>gi|228473570|ref|ZP_04058322.1| cell division protein FtsH [Capnocytophaga gingivalis ATCC 33624]
 gi|228274942|gb|EEK13752.1| cell division protein FtsH [Capnocytophaga gingivalis ATCC 33624]
          Length = 639

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 25/182 (13%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKL 131
            K   +DV+      +  + I   L    K +       P   L+VG  G GKT     L
Sbjct: 189 KKITFQDVAGLEGAKEEVQEIVDFLKNPEK-YTSLGGKIPKGALLVGPPGTGKT----LL 243

Query: 132 SKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
           +K ++        +   +                  +       S    L  +A +++ +
Sbjct: 244 AKAVAGEAKVPFFSLSGS---------------DFVEMFVGVGASRVRDLFRQAKEKSPS 288

Query: 192 KKVDVLIIDTAGRLHNNSILMA----GIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
               +  ID  GR    + L          + ++L  +D     + + VL AT   + L 
Sbjct: 289 IIF-IDEIDAIGRARGKNNLTNANDERENTLNQLLTEMDGFGTTTNVIVLAATNRADILD 347

Query: 248 QV 249
           + 
Sbjct: 348 KA 349


>gi|170786275|gb|ACB38131.1| nonstructural polyprotein [Tulane virus]
          Length = 1447

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 57  DIGVAVAQKIVEELLT-KRYAKDVSVQRVLYDVSELIHKMLMPLSKPF-NWDFSHRPHVI 114
           D+   + Q++ + +      A D S    +    +  + +   L K   N     RP VI
Sbjct: 326 DVSTRL-QRLSDTIKDLSVMACDPSAPPEVAQAIKQANDVKRALEKTLMNTAHRRRPIVI 384

Query: 115 LVVGVNGVGKTTVIGKLSKK 134
           ++ G  G GKTT    L++ 
Sbjct: 385 VLAGPPGCGKTTFAKHLAQH 404


>gi|167907983|ref|ZP_02495188.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei NCTC 13177]
          Length = 721

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ E L  +   +       +  ++E I      L  P       +PH V L+ G +G
Sbjct: 411 VLKLAETLAERVVGQ----PHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 460

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L++ +       +      F+ A           T +    +  G     
Sbjct: 461 VGKTETALA-LAETLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 509

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +  + +   V+++D   + H +             +   +       ++V+ + 
Sbjct: 510 QGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLT 569

Query: 238 DATTGQNALR 247
                +  ++
Sbjct: 570 SNVGSERVMQ 579


>gi|153813626|ref|ZP_01966294.1| hypothetical protein RUMOBE_04049 [Ruminococcus obeum ATCC 29174]
 gi|149830282|gb|EDM85375.1| hypothetical protein RUMOBE_04049 [Ruminococcus obeum ATCC 29174]
          Length = 257

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I V G  GVGKTT    L++  +  G  V+ A  D
Sbjct: 3   IAVTGKGGVGKTTFAATLARLYAAEGRPVLAADVD 37


>gi|125717937|ref|YP_001035070.1| ABC transporter ATP binding/permease protein [Streptococcus
           sanguinis SK36]
 gi|125497854|gb|ABN44520.1| ABC transporter ATP binding/permease protein, putative
           [Streptococcus sanguinis SK36]
          Length = 592

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 19/176 (10%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
           + +T +    +      + +  +L  +D +     +K+ ++L  +   KDV  Q V    
Sbjct: 305 QNLTQLAGQLQSAKSSLDRIFQVLDEADEVNDE-TEKLDQDLTGQVSFKDVDFQYVAA-- 361

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                    PL + FN +      V  +VG  G GKTT+I  L +        + +   D
Sbjct: 362 --------KPLIRNFNLEVKPGEMV-AIVGPTGAGKTTLINLLMRFYDVTKGAITVDGHD 412

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEI------GSDAAALAYEAFKQAQAKKVDVLI 198
               +  D  K +       ++            +  A   E  + A+A  VD  I
Sbjct: 413 IRHLSRQDYRKQFGMVLQDAWLYEGTIKENLRFGNLQATDEEIVEAAKAANVDHFI 468


>gi|153003502|ref|YP_001377827.1| ATPase [Anaeromyxobacter sp. Fw109-5]
 gi|152027075|gb|ABS24843.1| ATPase AAA-2 domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 890

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 20/182 (10%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E  L KR    V  +  L  VSE + +    L  P     S      L +G  GVGKT 
Sbjct: 564 MERALEKRV---VGQEEALRAVSEAVRRARTGLKDP-----SRPIGTFLFLGPTGVGKTE 615

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
               L++ +     +  +   D          +     T +  V +  G      A +  
Sbjct: 616 TARALAEYL--FNDEEAMIRFDMS--------EFQERHTVSRLVGAPPGYVGYEEAGKLT 665

Query: 187 KQAQAKKVDVLIIDTAGRLHNN--SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQN 244
           +  + +   VL+ D   + H +  ++L+  +        +    +  + + VL +  G +
Sbjct: 666 EAVRRRPYSVLLFDEIEKAHPDVFNVLLQLMDDGRLTDAKGRTVSFKNTIVVLTSNVGAD 725

Query: 245 AL 246
           AL
Sbjct: 726 AL 727


>gi|148555699|ref|YP_001263281.1| ATPase MipZ [Sphingomonas wittichii RW1]
 gi|148500889|gb|ABQ69143.1| ATPase MipZ [Sphingomonas wittichii RW1]
          Length = 267

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDT-FRSAAI----DQLKIWADRTSADFVCSEIG 175
           G GK+T    ++  ++ AG +V     DT  R+ A      Q               E  
Sbjct: 15  GSGKSTTSVHVAVALASAGRRVAAIDLDTRQRTLARYLENRQATAQRTGQPLPTPSFETF 74

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSI 210
             A     +      A   +V++IDT GR   ++ 
Sbjct: 75  DPARGHRLDDLIDGFAADHEVIVIDTPGRDDEHAR 109


>gi|308804545|ref|XP_003079585.1| heat shock protein 100, putative / HSP100, putative / heat shock
           protein clpB, pu (ISS) [Ostreococcus tauri]
 gi|116058040|emb|CAL54243.1| heat shock protein 100, putative / HSP100, putative / heat shock
           protein clpB, pu (ISS) [Ostreococcus tauri]
          Length = 844

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 65/176 (36%), Gaps = 29/176 (16%)

Query: 45  VREELEDLLIRSDI-----GVAVAQ-------KIVEELLTKRYAKDVSVQRVLYDVSELI 92
           +R+E+ +  I +D+     G+ V++       K+++ L  + + + V     +  V E I
Sbjct: 502 LRDEVTETDI-ADVISKWTGIPVSKLQQGEREKLLD-LPAELHKRVVGQDEAVRSVCEAI 559

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS 152
            +    LS P     +      + +G  GVGKT +   L+  +     +  +   D    
Sbjct: 560 QRSRAGLSDP-----NRPIASFMFLGPTGVGKTELCKTLASFL--FNTEEAMIRIDMS-- 610

Query: 153 AAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN 208
                 +     + +  + +  G        +  +  + +   V++ D   + H +
Sbjct: 611 ------EYMEKHSVSRLIGAPPGYVGFEEGGQLTEAVRRRPYSVVLFDEMEKAHGD 660


>gi|115610501|ref|XP_781266.2| PREDICTED: similar to endonuclease/reverse transcriptase
           [Strongylocentrotus purpuratus]
 gi|115946401|ref|XP_001184580.1| PREDICTED: similar to endonuclease/reverse transcriptase
           [Strongylocentrotus purpuratus]
          Length = 607

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 12/120 (10%)

Query: 93  HKMLMPLSKPFNWDFSHR-PHVILVVGVNGVGKTTVIGKLS------KKMSDAGLKVMLA 145
            K ++  +   +   +   P  I+V G  G GKTT   K++      +  S     +++ 
Sbjct: 199 EKRMLDYNDILDLKVNEEFPKRIMVQGEAGAGKTTFCAKIAWDWIGGRHFSRFVWVLIVP 258

Query: 146 AGDTFRSAAIDQLKIWADRTSADFVCSEIGS-----DAAALAYEAFKQAQAKKVDVLIID 200
             D  R    +  K + D+ +   +             + +   +    Q  + D++ +D
Sbjct: 259 LRDFKRHTIGEIAKSYLDKNNPATISQITEYIRSNPHKSRVYDWSSILQQRSQADIIFLD 318


>gi|119385158|ref|YP_916214.1| arginine/ornithine transport system ATPase [Paracoccus
           denitrificans PD1222]
 gi|119374925|gb|ABL70518.1| LAO/AO transport system ATPase [Paracoccus denitrificans PD1222]
          Length = 337

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 35/184 (19%)

Query: 114 ILVVGVNGVGKTTVI---GKLSKKMSDAGLKVMLAAGD--TFRSAAI-----DQLKIWAD 163
           I + G  GVGK+T I   GK+   ++  GLKV + A D  + RS         +++  + 
Sbjct: 49  IGLSGTPGVGKSTFIEAFGKM---LTAQGLKVAVLAVDPSSARSGGSILGDKTRMETLSR 105

Query: 164 RTSADFVCSEIGSDAAALAY---EAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
             +A    S   ++   +A    E  +  +A   DV++I+T G   + + L+A +  +  
Sbjct: 106 DPNAFIRPSPSRAELGGVARRTRETVRLCEAAGFDVVLIETVGVGQSET-LVAEMSDL-- 162

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEM-FHAVAGTTGLIMTKMDGTARGGGLIPIV 279
                          +L A  G + L+ V+     +A    +++ K DG  R   +  + 
Sbjct: 163 -------------FILLLAPAGGDELQGVKRGIMEIADI--ILVNKADGDLRETAMRTVA 207

Query: 280 VTHK 283
               
Sbjct: 208 DYAG 211


>gi|327479082|gb|AEA82392.1| branched-chain amino acid ABC transporter, ATP-binding protein
           [Pseudomonas stutzeri DSM 4166]
          Length = 247

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 92  IHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           + K         N D   H   V  ++G NG GKTTV   L+K +      + L   D  
Sbjct: 8   LRKEFGGFVAVNNVDLDVHHARVHALIGPNGAGKTTVFNLLTKFLQPTAGSIRLLDHDIT 67

Query: 151 RS 152
           R+
Sbjct: 68  RT 69


>gi|324992966|gb|EGC24886.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Streptococcus sanguinis SK405]
 gi|324995725|gb|EGC27637.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Streptococcus sanguinis SK678]
          Length = 592

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 19/176 (10%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
           + +T +    +      + +  +L  +D +     +K+ ++L  +   KDV  Q  + D 
Sbjct: 305 QNLTQLAGQLQSAKSSLDRIFQVLDEADEVNDE-TEKLDQDLTGQVSFKDVDFQ-YVAD- 361

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                    PL + FN +      V  +VG  G GKTT+I  L +        + +   D
Sbjct: 362 --------KPLIRNFNLEVKPGEMV-AIVGPTGAGKTTLINLLMRFYDVTKGAITVDGHD 412

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEI------GSDAAALAYEAFKQAQAKKVDVLI 198
               +  D  K +       ++            +  A   E  + A+A  VD  I
Sbjct: 413 IRHLSRQDYRKQFGMVLQDAWLYEGTIKENLRFGNLQATDEEIVEAAKAANVDHFI 468


>gi|315653157|ref|ZP_07906082.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
           iners ATCC 55195]
 gi|315489522|gb|EFU79159.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
           iners ATCC 55195]
          Length = 725

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 72/181 (39%), Gaps = 28/181 (15%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLS 100
            E+L+D  +  D    +++K++E+++ ++    V       Q  L ++++ + K ++   
Sbjct: 382 YEKLKDQKVDPDKTPVISEKVMEKIIEEKTNIPVGDLQKQEQMQLKNLADDLKKHIIGQD 441

Query: 101 KPFN------------WDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           K  +            ++ S RP    L VG  GVGKT +  +L+K     G +  +   
Sbjct: 442 KAVDVISKAIRRNRVGFNKSGRPIGSFLFVGPTGVGKTELAKQLAK--QMFGTEKSMIRF 499

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D          +     + +  + S  G      A +  ++ +     +++ D   + H 
Sbjct: 500 DMS--------EYMEQYSVSKLIGSAPGYVGYEEAGQLTEKVRHNPYSLILFDEIEKAHP 551

Query: 208 N 208
           +
Sbjct: 552 D 552


>gi|325108937|ref|YP_004270005.1| cobyrinic acid ac-diamide synthase [Planctomyces brasiliensis DSM
           5305]
 gi|324969205|gb|ADY59983.1| cobyrinic acid ac-diamide synthase [Planctomyces brasiliensis DSM
           5305]
          Length = 280

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 10/140 (7%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTF-RSAAIDQLKIWADRTSADFVCSEIG---- 175
           GVGKTT    ++  ++  G KV+L   D+   S++   ++++    +   V S       
Sbjct: 12  GVGKTTSSVNIAAGLAKQGRKVLLLDLDSQGNSSSHLGIEVYPGMNTIYQVFSHEQPLSA 71

Query: 176 --SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSV 233
                    + A        VDV +ID  GR      L   +   I+     D       
Sbjct: 72  VRQLVGQNLWLAPANMDLAAVDVELIDAEGREFI---LRRALDTAIKSGDAADLDYVIMD 128

Query: 234 LQVLDATTGQNALRQVEMFH 253
                 T   NAL       
Sbjct: 129 CPPALNTVTINALTAATEMF 148


>gi|307721442|ref|YP_003892582.1| ATPase [Sulfurimonas autotrophica DSM 16294]
 gi|306979535|gb|ADN09570.1| ATPase-like, ParA/MinD [Sulfurimonas autotrophica DSM 16294]
          Length = 385

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 80/241 (33%), Gaps = 40/241 (16%)

Query: 59  GVAVAQKIVEELLTKRYAKDV-SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
              VAQ+I +E      +    +V   +          +   S     + + +    L+V
Sbjct: 48  APEVAQQIKDEATEALKSAGAANVTVNVKAPQ------MPRESSSHGKNIAPQVKNFLMV 101

Query: 118 --GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
             G  GVGK+T    ++  ++  G KV L   D +                   V  E+ 
Sbjct: 102 SSGKGGVGKSTTSVNIAIALAAQGKKVGLLDADIYGPN-------VPRMMGVSDVKPEVN 154

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNN-SILMAGIGKMIRVLKRLDPHAPHSVL 234
            +            +A  ++++   + G L  +   L+     +++ +++       S L
Sbjct: 155 GNK-------VLPIKAYGIEMM---SMGSLMEDGQSLIWRGAMIMKAIEQFLRDILWSEL 204

Query: 235 QV----LDATTGQNALRQVEMFHAVAGTTGLIMT----KMDGTARGGGLIPIVVTHKIPV 286
            V    +   TG   L   +     AG T  + T     +D + R    + +     IP+
Sbjct: 205 DVLVIDMPPGTGDAQLTLAQSVPVTAGLT--VTTPQGVSLDDSRR---SLDMFKKLNIPI 259

Query: 287 Y 287
            
Sbjct: 260 A 260


>gi|307718920|ref|YP_003874452.1| chaperone ClpB [Spirochaeta thermophila DSM 6192]
 gi|306532645|gb|ADN02179.1| chaperone ClpB [Spirochaeta thermophila DSM 6192]
          Length = 836

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 17/139 (12%)

Query: 3   NQKVASESLSWIRKLTKGFASTSLKLKEGIT---DIISSRRLDDGVREELEDLLIRSDIG 59
           N + A+     + +L           K  I    +I+    + + V  ++  + +     
Sbjct: 451 NYERAAAVRDQVNRLKMELERLKTAWKLEIKRTQNIVDQEDIQE-VVSDITGIPL----- 504

Query: 60  VAVAQKIVEELL---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILV 116
           V +AQ   E LL    + + K +S    +  V+  I +    LS P     S      + 
Sbjct: 505 VRIAQSESERLLHIEEELHRKVISQDEAIKVVASAIRRARTGLSSPNRPMGS-----FVF 559

Query: 117 VGVNGVGKTTVIGKLSKKM 135
           +G  GVGKT +   L++ +
Sbjct: 560 LGPTGVGKTLLAKTLAEYL 578


>gi|302308117|ref|NP_984925.2| AER065Cp [Ashbya gossypii ATCC 10895]
 gi|299789303|gb|AAS52749.2| AER065Cp [Ashbya gossypii ATCC 10895]
          Length = 774

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 48  ELEDLLIRSDIGVAVAQKI-VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWD 106
           + E  L+   +  +  ++I +E    K Y  D++ Q  L    E + ++ +  ++     
Sbjct: 485 DFEAALLE--VKPSAMREIFLE--TPKVYWSDIAGQDQLKREMEEVIELPLKGAEKLKRL 540

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLS 132
               P  IL+ G  G  KT     L+
Sbjct: 541 RITPPKGILLYGPPGCSKTLTAKALA 566


>gi|298505921|gb|ADI84644.1| cell division ATP-dependent zinc protease FtsH [Geobacter
           sulfurreducens KN400]
          Length = 610

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   +   +DV+      +  E I + L    K F       P  +L+VG  G GK
Sbjct: 141 KLLTEAQGRVTFEDVAGVDEAKEELEEIIQFLKD-PKKFTKLGGRIPKGVLLVGPPGTGK 199

Query: 125 T 125
           T
Sbjct: 200 T 200


>gi|296111771|ref|YP_003622153.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Leuconostoc
           kimchii IMSNU 11154]
 gi|295833303|gb|ADG41184.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Leuconostoc
           kimchii IMSNU 11154]
          Length = 683

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 21/146 (14%)

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGV 122
           Q++   L      ++++VQ     V++ I +  + L+K      S RP    L VG  GV
Sbjct: 385 QELDSHLSDHVIGQELAVQ----TVAKAIRRNRIGLTK------SGRPIGSFLFVGPTGV 434

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALA 182
           GKT +  +L+K     G K  L   D          +       +  + +  G      A
Sbjct: 435 GKTELAKQLAK--EMFGSKEALIRFDMS--------EYMEKHAVSKMIGAPAGYVGYEEA 484

Query: 183 YEAFKQAQAKKVDVLIIDTAGRLHNN 208
            +  +Q +     +++ID A + H +
Sbjct: 485 GQLTEQVRRHPYSLILIDEAEKAHPD 510


>gi|259501405|ref|ZP_05744307.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
 gi|259167154|gb|EEW51649.1| ATP-dependent Clp protease [Lactobacillus iners DSM 13335]
          Length = 725

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 72/181 (39%), Gaps = 28/181 (15%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLS 100
            E+L+D  +  D    +++K++E+++ ++    V       Q  L ++++ + K ++   
Sbjct: 382 YEKLKDQKVDPDKTPVISEKVMEKIIEEKTNIPVGDLQKQEQMQLKNLADDLKKHIIGQD 441

Query: 101 KPFN------------WDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           K  +            ++ S RP    L VG  GVGKT +  +L+K     G +  +   
Sbjct: 442 KAVDVISKAIRRNRVGFNKSGRPIGSFLFVGPTGVGKTELAKQLAK--QMFGTEKSMIRF 499

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D          +     + +  + S  G      A +  ++ +     +++ D   + H 
Sbjct: 500 DMS--------EYMEQYSVSKLIGSAPGYVGYEEAGQLTEKVRHNPYSLILFDEIEKAHP 551

Query: 208 N 208
           +
Sbjct: 552 D 552


>gi|257095557|ref|YP_003169198.1| hypothetical protein CAP2UW1_4025 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048081|gb|ACV37269.1| protein of unknown function DUF59 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 363

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 90/262 (34%), Gaps = 54/262 (20%)

Query: 59  GVAVAQKI---------VEELLTKRYAK--------DVSVQRVLYDVSELIHKMLMPLSK 101
           GV VA  I         V+E+     AK        +VS    +  V+  + + L PL  
Sbjct: 37  GVDVALDIELGYPAKTQVDEIRRTVIAKLRTIPGIGNVSANVTVKIVAHTVQRGLKPL-- 94

Query: 102 PFNWDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
                     ++I V  G  GVGK+T    L+  ++  G  V L   D +      Q ++
Sbjct: 95  ------PGVKNIIAVASGKGGVGKSTTAVNLALALAQEGAVVGLLDADIYGP---SQPQM 145

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                      S+  S    LA+     +    +D+           +S ++     + +
Sbjct: 146 LG-LVGQKPESSDGVSMDPLLAHGLQAMSIGFMIDI-----------DSPMVWRGPMVTQ 193

Query: 221 VLKRLDP--HAPHSVLQVLDATTGQNALRQVEMFHAVAGTTGLIM--TKMD---GTARGG 273
            L++L    +       V+D   G    +           TG ++  T  D     AR G
Sbjct: 194 ALEQLLKQTNWQDVDYLVVDMPPGTGDTQLTLA--QKVPVTGAVIVTTPQDIALIDARKG 251

Query: 274 GLIPIVVTHKIPVYFLGVGEGI 295
             + +     IP+  +G+ E +
Sbjct: 252 --LKMFEKVGIPI--IGLVENM 269


>gi|242373192|ref|ZP_04818766.1| arsenite-transporting ATPase [Staphylococcus epidermidis M23864:W1]
 gi|242349143|gb|EES40744.1| arsenite-transporting ATPase [Staphylococcus epidermidis M23864:W1]
          Length = 575

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + I +     +K  +   + +   +  +G  GVGKTTV  +L+  +S+ G +V+LA  D
Sbjct: 311 DFIVEDHPQFNKLIDEIENSKVQYLFTMGKGGVGKTTVATQLATTLSNKGYRVLLATTD 369


>gi|228475558|ref|ZP_04060276.1| arsenical pump-driving ATPase [Staphylococcus hominis SK119]
 gi|228270340|gb|EEK11775.1| arsenical pump-driving ATPase [Staphylococcus hominis SK119]
          Length = 576

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + I +     +K  +   + +   +  +G  GVGKTTV  +L+  +S+ G +V+LA  D
Sbjct: 311 DFIVEDHPQFNKLIDEIENSKVQYLFTMGKGGVGKTTVATQLATTLSNKGYRVLLATTD 369


>gi|289581828|ref|YP_003480294.1| ABC transporter [Natrialba magadii ATCC 43099]
 gi|289531381|gb|ADD05732.1| ABC transporter related protein [Natrialba magadii ATCC 43099]
          Length = 308

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 8/50 (16%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF--------RSAAIDQ 157
            +G NG GKTT IG L   +      V +   D          R+ A+ Q
Sbjct: 38  FLGPNGAGKTTAIGLLLNFLRPTDGAVRVFGQDVQANELAVKSRTGALPQ 87


>gi|254523792|ref|ZP_05135847.1| twitching motility protein [Stenotrophomonas sp. SKA14]
 gi|219721383|gb|EED39908.1| twitching motility protein [Stenotrophomonas sp. SKA14]
          Length = 380

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 41/143 (28%), Gaps = 25/143 (17%)

Query: 113 VILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFV 170
           +IL VG  G GK+T    L+      +      +   +      I+ +            
Sbjct: 132 IILFVGATGTGKSTS---LAAMIGYRNQNSTGHIITIED----PIEFVHKHEGCIITQRE 184

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
                    A      +QA     DV++I   G +     +   I               
Sbjct: 185 VGIDTDSWEAALKNTLRQAP----DVIMI---GEVRTREGMDHAIAF---------AETG 228

Query: 231 HSVLQVLDATTGQNALRQVEMFH 253
           H VL  L A     A+ ++  F 
Sbjct: 229 HLVLCTLHANNANQAMDRIVNFF 251


>gi|254448639|ref|ZP_05062098.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium HTCC5015]
 gi|198261828|gb|EDY86114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium HTCC5015]
          Length = 450

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 43/156 (27%), Gaps = 14/156 (8%)

Query: 116 VVGVNGV-GKTTVIGKLSKKMSDAGLKVMLAAGDT-------FRSAAIDQLKIWADRTSA 167
           V+GV G  GKTT    L+  +  AG+      G          R    D   I AD    
Sbjct: 105 VLGVAGTHGKTTTSAMLAWVLECAGMAPGFLIGGVPENFGCSARLGDTDFFVIEADEYDT 164

Query: 168 DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
            F                    +    D +  D A        LM  I    RV+   + 
Sbjct: 165 AFFDKRSKFVHYRPRTAILNNLEYDHAD-IFPDLAAIQRQFHHLMRCIPGQGRVISPANS 223

Query: 228 HAPHSVLQVLDATTGQNA-----LRQVEMFHAVAGT 258
                VL++   +  +       + Q     +    
Sbjct: 224 EPLDDVLKMGCWSEVERVGGDWTIEQSAADFSAFDV 259


>gi|50954085|ref|YP_061373.1| ABC transporter, NBP/MSD fusion protein (pimaricin) [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50950567|gb|AAT88268.1| ABC transporter, NBP/MSD fusion protein (pimaricin) [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 618

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 67  VEELLTKRYAK-DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125
            E L  +   + ++      YD    + + L    +P         H + +VG  G GKT
Sbjct: 353 TEHLPERANGRVELDSVDFSYDPETELIRDLSLSVEPG--------HTVAIVGPTGAGKT 404

Query: 126 TVIGKLSKKMSDAGLKVMLAAGDT 149
           T++  + +     G  + L   DT
Sbjct: 405 TLVNLIMRFYELNGGAIRLDGIDT 428


>gi|15899034|ref|NP_343639.1| hypothetical protein SSO2265 [Sulfolobus solfataricus P2]
 gi|284175096|ref|ZP_06389065.1| hypothetical protein Ssol98_10680 [Sulfolobus solfataricus 98/2]
 gi|13815565|gb|AAK42429.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261600778|gb|ACX90381.1| LAO/AO transport system ATPase [Sulfolobus solfataricus 98/2]
          Length = 315

 Score = 36.4 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 32/213 (15%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++EE L         +   +  +++     L  LSK      S   HVI + G+ G GK
Sbjct: 8   KLIEEALNGNELAIARLLTKIEYMTDEGISALGTLSK-----RSGNAHVIGITGIPGSGK 62

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAI---------DQLKIWADRTSADFVCS-EI 174
           +T+IG L ++    G +V +   D      +          Q K          + S   
Sbjct: 63  STIIGGLIQEYVSRGHRVGVIVIDPSSPYTMGSFMGNRLRFQDKTMLKNVFVRSIGSRGY 122

Query: 175 GSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL 234
               +A A    +       D +II+T G    ++                        +
Sbjct: 123 LGGISAEALMLTEALDGLGYDKIIIETVGAGQTDTE----------------VEQSVHTI 166

Query: 235 QVLDATTGQNALRQVEMFHAVAGTTGLIMTKMD 267
            V+      + ++ ++      G    ++ K D
Sbjct: 167 LVVSIPGAGDDIQALKAGIMEIG-DIYVLNKAD 198


>gi|323704310|ref|ZP_08115889.1| LAO/AO transport system ATPase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536376|gb|EGB26148.1| LAO/AO transport system ATPase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 316

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 80/235 (34%), Gaps = 47/235 (20%)

Query: 48  ELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV-LYDVSELIHKMLMPLSKPFNWD 106
           +LE+LL++ D               +  AK +++       V E+I  +         + 
Sbjct: 5   DLENLLLKRD--------------KRAIAKAITMAENGDARVYEIIKNL---------YT 41

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD---TFRSAAIDQLKIWAD 163
            + + ++I + G  GVGK+T+  +++K +      V + A D    F   AI   ++   
Sbjct: 42  NTGKAYIIGITGPPGVGKSTLTNEIAKFLLKENNSVGILAVDPTSFFSGGAILGDRVRMS 101

Query: 164 RT----SADFVCSEIGSDAAALA---YEAFKQAQAKKVDVLIIDTAGRLHNNSI------ 210
                 +              LA     +        +D +I++T+G   +         
Sbjct: 102 DIALDENVYMRSMGTRGKLGGLAKATRASIHILDIVGMDYIIVETSGVGQSEIDIVKTSD 161

Query: 211 -----LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAVAGTTG 260
                L  G+G  I+ +K          + V++ +    A +     + +     
Sbjct: 162 TNVMVLSPGMGDDIQAIKSGIMEIGD--IFVVNKSDRDGADKTAAEINFMLDLNS 214


>gi|295110173|emb|CBL24126.1| CO dehydrogenase maturation factor [Ruminococcus obeum A2-162]
          Length = 257

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           I V G  GVGKTT    L++  +  G  V+ A  D
Sbjct: 3   IAVTGKGGVGKTTFAATLARLYAAEGRPVLAADVD 37


>gi|288919243|ref|ZP_06413579.1| ABC transporter related protein [Frankia sp. EUN1f]
 gi|288349338|gb|EFC83579.1| ABC transporter related protein [Frankia sp. EUN1f]
          Length = 649

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 107 FSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            +   H + +VG  G GKTT+I  L +     G ++ L   D
Sbjct: 427 VAEPGHTVAIVGPTGAGKTTLINLLMRFYEVTGGRITLDGAD 468


>gi|282882770|ref|ZP_06291377.1| Mrp-like protein [Peptoniphilus lacrimalis 315-B]
 gi|281297431|gb|EFA89920.1| Mrp-like protein [Peptoniphilus lacrimalis 315-B]
          Length = 256

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 102 PFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            FN + + +  + +V G  GVGKT     L+  +   G KV +   D
Sbjct: 8   EFNENSNVKNVIAVVSGKGGVGKTFTTSVLASHLRRQGYKVGVLDAD 54


>gi|255305943|ref|ZP_05350115.1| putative ABC transporter, permease/ATP-binding protein [Clostridium
           difficile ATCC 43255]
          Length = 594

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGV 119
                VEE+  +  +K +S+ +       +         L K  N + +     I +VG 
Sbjct: 325 TVMDEVEEIKDEESSKVISMPKGKVQFEHVKFGYSDDFILMKDININLNAG-DKIAIVGP 383

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVML 144
            G GKTT++  L +     G ++ +
Sbjct: 384 TGAGKTTLVNLLMRFYEIQGGRITI 408


>gi|225575016|ref|ZP_03783626.1| hypothetical protein RUMHYD_03096 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037767|gb|EEG48013.1| hypothetical protein RUMHYD_03096 [Blautia hydrogenotrophica DSM
           10507]
          Length = 555

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 12/122 (9%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           V EL  +   + +     +  + E + +  +           HR   I++ G +  GKTT
Sbjct: 250 VGELNQRIVREGI---EHVVLLQEALQETKLSDIAQQIIQAGHRKF-IMIAGPSSSGKTT 305

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
              +LS +++  GL+            A+D   +  + T  D   ++      A+  EAF
Sbjct: 306 FSHRLSIQLAAHGLRPH--------PIAVDNYFVNREDTPLDEFGNKNYECLEAIDVEAF 357

Query: 187 KQ 188
            +
Sbjct: 358 NR 359


>gi|150378384|ref|YP_001314978.1| cobyrinic acid ac-diamide synthase [Sinorhizobium medicae WSM419]
 gi|150032931|gb|ABR65045.1| Cobyrinic acid ac-diamide synthase [Sinorhizobium medicae WSM419]
          Length = 404

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           G GKTT    L++ ++  G +++    D
Sbjct: 130 GSGKTTTAAHLAQYLAMRGYRILAIDLD 157


>gi|90409009|ref|ZP_01217139.1| cell division protein FtsH [Psychromonas sp. CNPT3]
 gi|90309894|gb|EAS38049.1| cell division protein FtsH [Psychromonas sp. CNPT3]
          Length = 649

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   K    DV+      +  + +   L   S  F       P  +L+VG  G GK
Sbjct: 140 KLMGEDQIKTTFADVAGCDEAKEDVKELVDYLKD-STKFQRLGGRIPTGVLLVGPPGTGK 198

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++        A   +                  +       S    +  +
Sbjct: 199 T----LLAKAIAGEAKVPFFAISGS---------------DFVEMFVGVGASRVRDMFEQ 239

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR   + +          + ++L  +D    +  + V+ AT 
Sbjct: 240 AKKSAPCIIF-IDEIDAVGRQRGSGMGGGNDEREQTLNQLLVEMDGFEGNEGVIVIAATN 298

Query: 242 GQNALRQV 249
             + L   
Sbjct: 299 RPDVLDAA 306


>gi|11499620|ref|NP_070862.1| hypothetical protein AF2038 [Archaeoglobus fulgidus DSM 4304]
 gi|2648497|gb|AAB89216.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 627

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 11/100 (11%)

Query: 5   KVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQ 64
           ++ S     + KL K        L++   +  S R++ D + E              + +
Sbjct: 259 ELESMKSEELEKLKKRLEIQKESLRKFEDEAESFRKIGDAIYE-----------NYQMVE 307

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFN 104
           KI+E     R  K     + +    E + K++  +    N
Sbjct: 308 KIIEAFRAARERKSWDEIKEIVARDEKLKKLVKAIKPEKN 347


>gi|70725112|ref|YP_252026.1| arsenical pump-driving ATPase [Staphylococcus haemolyticus
           JCSC1435]
 gi|68445836|dbj|BAE03420.1| arsenical pump-driving ATPase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 576

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 90  ELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           + I +     +K  +   + +   +  +G  GVGKTTV  +L+  +S+ G +V+LA  D
Sbjct: 311 DFIVEDHPQFNKLIDEIENSKVQYLFTMGKGGVGKTTVATQLATTLSNKGYRVLLATTD 369


>gi|15612648|ref|NP_240951.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus
           halodurans C-125]
 gi|10172697|dbj|BAB03804.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Bacillus
           halodurans C-125]
          Length = 657

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K+V E   K   KDV+           + + L    + F+   +  P  +L+VG  G GK
Sbjct: 147 KMVNEDKKKAKFKDVAGADEEKQELVEVVEFLKD-PRKFSAIGARIPKGVLLVGPPGTGK 205

Query: 125 T 125
           T
Sbjct: 206 T 206


>gi|1168972|sp|P46523|CLPA_BRANA RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA
           homolog, chloroplastic; Flags: Precursor
 gi|406311|emb|CAA53077.1| clpA [Brassica napus]
          Length = 874

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 39  RRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP 98
           + + D + +EL + L + ++ + V ++  E ++ + Y    +       +   I ++L  
Sbjct: 768 KEIADILLQELFERLKKKEVELQVTERFKERVVDEGY----NPSYGARPLRRAIMRLLED 823

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
             +        +    ++V V+  GK TV+
Sbjct: 824 SMEEKMLAREIKEGDSVIVDVDSEGKVTVL 853


>gi|87119798|ref|ZP_01075695.1| cell division protein FtsH [Marinomonas sp. MED121]
 gi|86165274|gb|EAQ66542.1| cell division protein FtsH [Marinomonas sp. MED121]
          Length = 656

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 24/173 (13%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           DV+      + ++ +   L   SK F       P  IL+ G  G GKT     L+K ++ 
Sbjct: 155 DVAGCDEAKEDTKELVDFLREPSK-FQRLGGKIPRGILMCGPPGTGKT----LLAKAIAG 209

Query: 138 AGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVL 197
                      +                  +       S    +  +A K A      + 
Sbjct: 210 EAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQAKKHAPCIIF-ID 253

Query: 198 IIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            ID  GR   + +          + ++L  +D    +  + V+ AT   + L 
Sbjct: 254 EIDAVGRNRGSGMGGGNDEREQTLNQLLVEMDGFEGNEGIIVIAATNRPDVLD 306


>gi|330984323|gb|EGH82426.1| AAA ATPase [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 681

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKM--LMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++++  K     +     L DV + + ++  ++   K +      +P  +++ G  GVGK
Sbjct: 195 IDKIDPKNLDDSLDDLVGLKDVKDELLQLQEMIENRKLYREYAVDKPFNVMLTGPAGVGK 254

Query: 125 TTVIGKLSKKMSDA 138
           T    K+++ ++  
Sbjct: 255 T----KIARCLAKR 264


>gi|325288402|ref|YP_004264583.1| membrane protease FtsH catalytic subunit [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963803|gb|ADY54582.1| membrane protease FtsH catalytic subunit [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 645

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 72  TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
            K   KDV+    + +  E I   L    + FN   +  P  +L+ G  G GKT  + K
Sbjct: 151 KKTTFKDVAGADEVKEELEEIVDFLKS-PRKFNEIGAKIPKGVLLFGPPGTGKTL-LAK 207


>gi|222149164|ref|YP_002550121.1| putative ABC transporter ATP-binding protein [Agrobacterium vitis
           S4]
 gi|221736149|gb|ACM37112.1| ABC transporter nucleotide binding/ATPase protein [Agrobacterium
           vitis S4]
          Length = 549

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 11/70 (15%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKM---LMPLSKPF-------NWDFSHRPHVIL-V 116
           E+L+     +     +++  VSE + ++   L  +SK +       N      P  I+ V
Sbjct: 289 EQLVEAAEKQRPGDAQIIIPVSERLGQVVIELDGISKSYGDRLLIDNLSLKLPPGGIVGV 348

Query: 117 VGVNGVGKTT 126
           +G NG GKTT
Sbjct: 349 IGPNGAGKTT 358


>gi|222529515|ref|YP_002573397.1| ABC transporter-like protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222456362|gb|ACM60624.1| ABC transporter related [Caldicellulosiruptor bescii DSM 6725]
          Length = 597

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM----PLSKPFNWDFS---HR 110
           + +A  ++I E L  +   +D      L  +   I    +       KP   D S     
Sbjct: 322 VAMASTERIFEILDIQPDVQDDPDAYDLPPIRGEITFENVSFSYDEEKPVLKDVSFTIKA 381

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
              I +VG  G GKTT+I  +++       ++++   D
Sbjct: 382 GETIALVGETGAGKTTIINLIARFYDPQKGRILIDGHD 419


>gi|167625066|ref|YP_001675360.1| ATP-dependent metalloprotease FtsH [Shewanella halifaxensis
           HAW-EB4]
 gi|167355088|gb|ABZ77701.1| ATP-dependent metalloprotease FtsH [Shewanella halifaxensis
           HAW-EB4]
          Length = 650

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   K    DV+      +  + +   L   +K F       P  +L+VG  G GK
Sbjct: 145 KLMSEDQIKTTFGDVAGCDEAKEDVKELVDYLKEPTK-FQKLGGRIPTGVLLVGPPGTGK 203

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 204 T----LLAKAIAGESKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 244

Query: 185 AFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR                + ++L  +D    +  + V+ AT 
Sbjct: 245 AKKSAPCIIF-IDEIDAVGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN 303

Query: 242 GQNALRQV 249
             + L   
Sbjct: 304 RPDVLDAA 311


>gi|168052400|ref|XP_001778638.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669956|gb|EDQ56533.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 782

 Score = 36.4 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 13/113 (11%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVC-- 171
           I++VG+   GKT    KL++ +   G          +R              SADF    
Sbjct: 337 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL------QLGCNQSADFFRGD 390

Query: 172 -SEIGSDAAALAYEAFK----QAQAKKVDVLIIDTAGRLHNNSILMAGIGKMI 219
             E       +A  A +      +     V + D     +    ++  + +  
Sbjct: 391 NQEGIDARNEVAALAMEDMLAWMEEGGQQVGVFDATNSTNARRNMLMKLAEGK 443


>gi|332246129|ref|XP_003272202.1| PREDICTED: antigen peptide transporter 2 isoform 1 [Nomascus
           leucogenys]
          Length = 703

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRSNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|330958690|gb|EGH58950.1| ABC transporter ATP-binding/permease protein [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 603

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 15/142 (10%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF---------RSAAIDQLKI---- 160
           + +VG NG GKTT+I  L++       +++L   D           R   I Q  I    
Sbjct: 386 VALVGENGSGKTTLIKLLTRLYRPDQGRILLDGSDLQEWDEDALRSRIGVIFQDFIRYQF 445

Query: 161 -WADRTSA-DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKM 218
              +     D       +     A +       +++D       GR       ++G    
Sbjct: 446 LVGENLGVGDTHAFHDETRWREAAAQGMAAQFIEQLDKGYATQLGRWFAGGQELSGGQWQ 505

Query: 219 IRVLKRLDPHAPHSVLQVLDAT 240
              L R        +L + + T
Sbjct: 506 KIALSRAYMRRDADILILDEPT 527


>gi|330445045|ref|ZP_08308699.1| adenylylsulfate kinase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328493163|dbj|GAA03196.1| adenylylsulfate kinase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 207

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
            +P V+   G++G GK+TV G L  K+++ G    L  GD  R  
Sbjct: 32  QKPCVLWFTGLSGAGKSTVAGALENKLAELGHHTYLLDGDNVRHG 76


>gi|303389628|ref|XP_003073046.1| hypothetical protein Eint_060780 [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302190|gb|ADM11686.1| hypothetical protein Eint_060780 [Encephalitozoon intestinalis ATCC
           50506]
          Length = 415

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 4   QKVASESL-SWIRKLTKGFASTSLKLKEGITDIISS-------RRLDDGVREELEDLLIR 55
           +KV  E + +    + +G       +K+ I + +           + + +REE++++L  
Sbjct: 234 EKVVDEKMRNENGVIEEGLDELKQNVKDNIKEELREDLKREFMGDVKEDIREEVKEVLSS 293

Query: 56  SDIGVAVAQKIVEEL-LTKRYAKD 78
           SDI  A+A  ++  + L +   K+
Sbjct: 294 SDIKNAIASDVISRIELEREVNKE 317


>gi|262371845|ref|ZP_06065124.1| ABC transporter ATP-binding protein [Acinetobacter junii SH205]
 gi|262311870|gb|EEY92955.1| ABC transporter ATP-binding protein [Acinetobacter junii SH205]
          Length = 596

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 69  ELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
            ++      D+  ++ +  V +L+ K     +         R  +  ++G NG GKTT  
Sbjct: 332 SVIESTAVNDIEQRQSIIIVKDLVRKFGDFTAVANTSFEVRRGEIFGLLGPNGAGKTTTF 391


>gi|257092757|ref|YP_003166398.1| arginine/ornithine transport system ATPase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045281|gb|ACV34469.1| LAO/AO transport system ATPase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 332

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 56/167 (33%), Gaps = 33/167 (19%)

Query: 64  QKIVEEL---LTKRYAKDVSVQR-----VLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           Q +VE +     +  AK +++             +++  +L    +      S  P    
Sbjct: 14  QHLVEGVLAGRRRALAKTITLVESTHHDHQRRARQVLTALLPHTGRTIRVGISGAP---- 69

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVML-------------AAGDTFRSAAIDQLKIWA 162
                G GK+T I  L   + +AG +V +               GD  R   ++ L    
Sbjct: 70  -----GAGKSTFIETLGLYLIEAGKRVAVLAVDPSSSVSGGSILGDKTR---MEFLCQRD 121

Query: 163 DRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNS 209
           +        S      A    EA    +A   DV+I++T G   + +
Sbjct: 122 EAFIRPSPSSGSLGGVADKTREAMLVCEAAGFDVIIVETVGVGQSET 168


>gi|188589384|ref|YP_001921792.1| arsenical pump-driving ATPase ArsA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499665|gb|ACD52801.1| putative arsenite-transporting ATPase ArsA [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 582

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 89  SELIH-KMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           +E+++   +  L+      + +   VI  +G  GVGKTT+   ++  +S  G KV L   
Sbjct: 303 NEILNITEIPKLNSIIEDLYKNDKKVIFTMGKGGVGKTTIAAAIALGLSKKGKKVHLTTT 362

Query: 148 D 148
           D
Sbjct: 363 D 363


>gi|167744020|ref|ZP_02416794.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei 14]
          Length = 716

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ E L  +   +       +  ++E I      L  P       +PH V L+ G +G
Sbjct: 406 VLKLAETLAERVVGQ----PHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 455

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L++ +       +      F+ A           T +    +  G     
Sbjct: 456 VGKTETALA-LAETLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 504

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +  + +   V+++D   + H +             +   +       ++V+ + 
Sbjct: 505 QGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLT 564

Query: 238 DATTGQNALR 247
                +  ++
Sbjct: 565 SNVGSERVMQ 574


>gi|115383940|ref|XP_001208517.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114196209|gb|EAU37909.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 4731

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 70/189 (37%), Gaps = 17/189 (8%)

Query: 76   AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
             +D+ VQ+       ++ + L P+ +            IL VG +G GKTT+I KL+  +
Sbjct: 2013 GRDLLVQQTAEPAMRILPQDL-PVLESLMLCIEQSWPSIL-VGASGCGKTTLIRKLAA-L 2069

Query: 136  SDAGLKVMLAAGDTFR---SAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAK 192
            + A L  +  + DT         +Q+    D      V S +   +  L        +  
Sbjct: 2070 NGANLVELALSADTDTMDLIGGFEQMDHKRD------VSSLMQEISLFLRRYIISTQKVT 2123

Query: 193  KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVL-----QVLDATTGQNALR 247
              DV +I    +L +    +  +   +  L R DPH     L     Q+LD T     ++
Sbjct: 2124 DGDVCVIQLFEKLQSTDASLDDVYTALSELYRSDPHESLEKLVARARQLLDITKHSEHMK 2183

Query: 248  QVEMFHAVA 256
                +    
Sbjct: 2184 VGFEWTEGV 2192


>gi|74599755|sp|Q5XNP0|ARO1_SCLSC RecName: Full=Pentafunctional AROM polypeptide; Includes: RecName:
            Full=3-dehydroquinate synthase; Short=DHQS; Includes:
            RecName: Full=3-phosphoshikimate
            1-carboxyvinyltransferase; AltName:
            Full=5-enolpyruvylshikimate-3-phosphate synthase;
            Short=EPSP synthase; Short=EPSPS; Includes: RecName:
            Full=Shikimate kinase; Short=SK; Includes: RecName:
            Full=3-dehydroquinate dehydratase;
            Short=3-dehydroquinase; Includes: RecName: Full=Shikimate
            dehydrogenase
 gi|53854589|gb|AAU95677.1| arom [Sclerotinia sclerotiorum]
          Length = 1590

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 56/166 (33%), Gaps = 23/166 (13%)

Query: 114  ILVVGVNGVGKTTV---IGK-LSKKMSDAGLKVMLAAG------------DTFRSAAIDQ 157
            I ++G+ G GKTT      K L +   D  +++   +G            D FR+A +D 
Sbjct: 866  IFIIGMRGAGKTTAGAWAAKILGRPYKDLDVELERISGMSIPDMVRSKGWDFFRAAELDL 925

Query: 158  LKI-WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLII--DT---AGRLHNNSIL 211
            LK    D+          G      A E           VL++  DT      L  +   
Sbjct: 926  LKHCLTDQPEKHVFACGGGVVEMPEARELLINFHKSGGIVLLVHRDTEQVMDYLRIDKTR 985

Query: 212  MAGIGKMIRVLKRLDPHAPHSVLQVLDAT-TGQNALRQVEMFHAVA 256
             A +  M+ V  R  P           +  +G +AL   E   A  
Sbjct: 986  PAYVEDMMGVYSRRKPWFNECSNFQYHSKGSGASALSVAEQDFARF 1031


>gi|138454|sp|P13459|VIRC1_AGRRH RecName: Full=Protein virC1
 gi|38998|emb|CAA31349.1| virC1 (AA 1-231) [Agrobacterium rhizogenes]
          Length = 231

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           G GKTT +  L   ++  G +V L   D  R       +      + D  C    ++  +
Sbjct: 12  GAGKTTALMGLCAALASDGRRVALFDADENRPL-TRWKENALRSNTWDSFCEVYAAEEMS 70

Query: 181 LAYEAFKQAQAKKVDVLIIDTAG 203
           L   A++ A+ +  D  + DT G
Sbjct: 71  LLEAAYEDAELQGFDYALADTHG 93


>gi|332687016|ref|YP_004456790.1| lipid A export ATP-binding/permease MsbA [Melissococcus plutonius
           ATCC 35311]
 gi|332371025|dbj|BAK21981.1| lipid A export ATP-binding/permease protein MsbA [Melissococcus
           plutonius ATCC 35311]
          Length = 619

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
           I +VG  G GKTT+I  L +     G  +     DT R    ++L+  
Sbjct: 410 IAIVGPTGAGKTTLINLLERFYDINGGSIKYDGVDT-RDLGRNELRAH 456


>gi|332246131|ref|XP_003272203.1| PREDICTED: antigen peptide transporter 2 isoform 2 [Nomascus
           leucogenys]
          Length = 653

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
           P+ K   +       V  +VG NG GK+TV   L       G +V+L          I Q
Sbjct: 484 PVLKGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDE------KPISQ 536

Query: 158 LKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGK 217
            +     +    V  E    + ++        Q+ + D ++        ++ I     G 
Sbjct: 537 YEHCYLHSQVVSVGQEPVLFSGSVRSNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGI 596

Query: 218 MIRVLKR 224
              V ++
Sbjct: 597 YTDVGEK 603


>gi|331017222|gb|EGH97278.1| general secretory pathway protein E [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 574

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 105 WDFSHRPHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDT--FRSAAIDQLKI 160
            D   RPH IL+V G  G GKTT +     +++ A  K++    D   ++   I+Q+++
Sbjct: 317 LDVLARPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVE-DPLEYQLEGINQIQV 374


>gi|313894617|ref|ZP_07828180.1| cell division protease FtsH [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313440807|gb|EFR59236.1| cell division protease FtsH [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 642

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           K   KDV+         E + + L    K F    +  P  +L+ G  G GKT  + K
Sbjct: 150 KVSFKDVAGAEEAKQELEEVVEFLKDPGK-FTTIGAKIPKGVLLAGPPGTGKTL-LAK 205


>gi|304407837|ref|ZP_07389488.1| ABC transporter related protein [Paenibacillus curdlanolyticus YK9]
 gi|304343320|gb|EFM09163.1| ABC transporter related protein [Paenibacillus curdlanolyticus YK9]
          Length = 660

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 99  LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           L    N +       I +VG  G GKTT+I  L +     G ++ +   D
Sbjct: 429 LMDDLNINV-QPGQTIAIVGPTGAGKTTLINLLMRFYELNGGRITVDGTD 477


>gi|294795209|ref|ZP_06760343.1| cell division protein FtsH [Veillonella sp. 3_1_44]
 gi|294454001|gb|EFG22376.1| cell division protein FtsH [Veillonella sp. 3_1_44]
          Length = 642

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           K   KDV+         E + + L    K F    +  P  +L+ G  G GKT  + K
Sbjct: 150 KVSFKDVAGAEEAKQELEEVVEFLKDPGK-FTTIGAKIPKGVLLAGPPGTGKTL-LAK 205


>gi|282850015|ref|ZP_06259397.1| ATP-dependent metallopeptidase HflB [Veillonella parvula ATCC
           17745]
 gi|294793390|ref|ZP_06758535.1| cell division protein FtsH [Veillonella sp. 6_1_27]
 gi|282580204|gb|EFB85605.1| ATP-dependent metallopeptidase HflB [Veillonella parvula ATCC
           17745]
 gi|294455821|gb|EFG24186.1| cell division protein FtsH [Veillonella sp. 6_1_27]
          Length = 642

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           K   KDV+         E + + L    K F    +  P  +L+ G  G GKT  + K
Sbjct: 150 KVSFKDVAGAEEAKQELEEVVEFLKDPGK-FTTIGAKIPKGVLLAGPPGTGKTL-LAK 205


>gi|282881204|ref|ZP_06289891.1| phosphoribulokinase/Uridine kinase family protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305008|gb|EFA97081.1| phosphoribulokinase/Uridine kinase family protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 553

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 15/122 (12%)

Query: 31  GITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSE 90
            + ++I   ++ +   E+     I   +GV+      E +        +++   L +   
Sbjct: 219 KLGELIRQDKMFEVFLEQHRRQHI---LGVSTVGDFNEAVQQGHATDMINISEALQEKK- 274

Query: 91  LIHKMLMPLSKPFNWDFSHRPHV--ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                            +  P V  +L+ G +  GKTT   +LS ++   G++ +  + D
Sbjct: 275 ---------ISQIADSIAMHPDVRMVLIAGPSSSGKTTFCKRLSIQLLANGIRPVQISLD 325

Query: 149 TF 150
            +
Sbjct: 326 DY 327


>gi|303285304|ref|XP_003061942.1| glycerate kinase [Micromonas pusilla CCMP1545]
 gi|226456353|gb|EEH53654.1| glycerate kinase [Micromonas pusilla CCMP1545]
          Length = 369

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 93  HKMLMPLSKPFNWDFSHRPHVILVVGV---NGVGKTTVIGKLSKKMSDAGLKVMLAAGDT 149
            ++L  +        S  P   LVVG+    G GKTTV+  L K +   G +    + D 
Sbjct: 88  ARILAHVDAYQTPQRSRDPPPPLVVGLSAPQGCGKTTVVSTLVKLLERRGTRAASLSIDD 147

Query: 150 FRSAAIDQ 157
                 +Q
Sbjct: 148 VYLTGAEQ 155


>gi|167924184|ref|ZP_02511275.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei BCC215]
          Length = 713

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ E L  +   +       +  ++E I      L  P       +PH V L+ G +G
Sbjct: 403 VLKLAETLAERVVGQ----PHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 452

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L++ +       +      F+ A           T +    +  G     
Sbjct: 453 VGKTETALA-LAETLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 501

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +  + +   V+++D   + H +             +   +       ++V+ + 
Sbjct: 502 QGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLT 561

Query: 238 DATTGQNALR 247
                +  ++
Sbjct: 562 SNVGSERVMQ 571


>gi|163815247|ref|ZP_02206624.1| hypothetical protein COPEUT_01407 [Coprococcus eutactus ATCC 27759]
 gi|158449442|gb|EDP26437.1| hypothetical protein COPEUT_01407 [Coprococcus eutactus ATCC 27759]
          Length = 670

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 95  MLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV-IGKLSKKMSDAGLKVMLAAGDTFRSA 153
           +L+  ++       H    +L++   G GKTTV I ++   +   G++       TF  A
Sbjct: 2   ILVEFNESQKIAIEHGGGPMLLLAGPGSGKTTVLIHRIKYMIQHHGIRPEHILVITFTKA 61

Query: 154 AIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
           A +++KI         V S       ++ +   + A       +I D 
Sbjct: 62  AANEMKIRFRNL-CPEVGSVTFGTFHSVFFWILRNAYNYTGTDIITDA 108


>gi|149193778|ref|ZP_01870876.1| ATP-dependent Zn protease [Caminibacter mediatlanticus TB-2]
 gi|149135731|gb|EDM24209.1| ATP-dependent Zn protease [Caminibacter mediatlanticus TB-2]
          Length = 493

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 21/173 (12%)

Query: 77  KDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMS 136
           KDV+    + +    I   L    K  ++  +  P  +L+VG  GVGKT     ++K ++
Sbjct: 95  KDVAGINEVKEELIEIVDFLKNPQKYRDFGINL-PKGVLLVGPPGVGKT----LIAKALA 149

Query: 137 DAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDV 196
                       +       Q+ +         + S+  + A ++ +          +D 
Sbjct: 150 GEAGVPFFYQSGSS----FVQMYVGVGAKRVRDLFSKAKAMAPSIIF----------IDE 195

Query: 197 LIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALRQV 249
             ID  G+   N         + ++L  +D       + V+ AT     L + 
Sbjct: 196 --IDAIGKARGNLRNDEREATLNQLLTEMDGFEGSEGVIVIGATNKVELLDEA 246


>gi|149072092|ref|YP_001293503.1| hypothetical plastid protein 46 [Rhodomonas salina]
 gi|134303043|gb|ABO70847.1| hypothetical plastid protein 46 [Rhodomonas salina]
          Length = 492

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 76  AKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            + +S    L ++ + + +    LSK         P  +L+VGV G GK+     ++ 
Sbjct: 224 NQKISDIGGLENLKKWLKRRSGALSKRAEDYGLPSPRGLLLVGVQGTGKSLTAKAIAN 281


>gi|114205442|ref|NP_932121.2| probable gluconokinase isoform a [Mus musculus]
 gi|182647405|sp|Q8R0J8|GNTK_MOUSE RecName: Full=Probable gluconokinase; AltName: Full=Gluconate
           kinase
 gi|148709305|gb|EDL41251.1| RIKEN cDNA 5133401N09, isoform CRA_a [Mus musculus]
          Length = 184

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 111 PHVILVVGVNGVGKTTVIGKLSKKMSDA 138
           P V+LV+GV+G GK+TV   L+ K+   
Sbjct: 4   PGVLLVMGVSGSGKSTVGALLASKLGWK 31


>gi|78777410|ref|YP_393725.1| cysteinyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
 gi|109894960|sp|Q30R91|SYC_SULDN RecName: Full=Cysteinyl-tRNA synthetase; AltName:
           Full=Cysteine--tRNA ligase; Short=CysRS
 gi|78497950|gb|ABB44490.1| cysteinyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
          Length = 466

 Score = 36.4 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 6/134 (4%)

Query: 18  TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAK 77
            K       +LK+ +  +       D  ++EL + L   D+ ++ +  ++EE++T+    
Sbjct: 317 KKRLDKIY-RLKKRLFGVTYEDEKTD-FKKELLETL-SDDLNISASLALIEEMITRANET 373

Query: 78  DVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
             +  +      E +   L  + K   +   + P+     GVN   K T I KL +K ++
Sbjct: 374 LDTAGKHKELKREALSN-LSFIEKILGFGIKN-PYEYFQFGVNEETK-TEIAKLIEKRAE 430

Query: 138 AGLKVMLAAGDTFR 151
           A      AA D  R
Sbjct: 431 AKKSKDFAASDMLR 444


>gi|332157932|ref|YP_004423211.1| thymidylate kinase [Pyrococcus sp. NA2]
 gi|331033395|gb|AEC51207.1| thymidylate kinase [Pyrococcus sp. NA2]
          Length = 205

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLA--AGDT 149
           + + I+  G++G GKTT    L+K   D G +V+L     DT
Sbjct: 2   KGYFIVFEGIDGSGKTTQAKLLAKWFRDNGYEVLLTKEPTDT 43


>gi|329765395|ref|ZP_08256975.1| ATPase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138301|gb|EGG42557.1| ATPase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 608

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 13/174 (7%)

Query: 80  SVQRVLYDVSELIHKMLM--PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSD 137
           S    +  V  ++   L    +S+     FS R   I++ G  G GK+T+   L+     
Sbjct: 231 SEAFEITIVHPIVKLTLDDYEISEELMKRFSDRAEGIIISGPPGSGKSTLASSLADFYYH 290

Query: 138 AGL--KVMLAAGDTFRSAAIDQLKIW----ADRTSADFVCSEIGSDAAALAYEAFKQAQA 191
            G   K   +  D   +  I Q         +      +     +    +     ++   
Sbjct: 291 KGKIVKTFESPRDLQVNPGITQYTKLDGSFDNSADILLLVRPDYTIFDEVRR---REDFR 347

Query: 192 KKVDVLI--IDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
              D+ +  +   G +H NS L A    + ++   + P+   +V+ V D   G+
Sbjct: 348 TFADLRLTGVGMVGVVHANSPLDAIQRFIGKIELGIIPNVIDTVVFVKDGQIGK 401


>gi|328769715|gb|EGF79758.1| hypothetical protein BATDEDRAFT_89162 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1081

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 13/80 (16%)

Query: 78  DVSVQRVLYDVSELIHKMLMPLSK--PFNWDFSH----RPHVILVVGVNGVGKT----TV 127
           D + +  +   +EL+ +    +SK       FS      P  IL+ G +G GKT    T 
Sbjct: 463 DAADKLYMTGFNELVDEAFQYISKCMLLKTSFSQLNISSPAGILISGPSGSGKTRLVETT 522

Query: 128 IGKLSKKMSDAGLKVMLAAG 147
             KL+       L       
Sbjct: 523 ALKLA---QHQHLHHARVNC 539


>gi|327470100|gb|EGF15564.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Streptococcus sanguinis SK330]
          Length = 592

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 19/176 (10%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
           + +T +    +      + +  +L  +D +     +K+ ++L  +   KDV  Q  + D 
Sbjct: 305 QNLTQLAGQLQSAKSSLDRIFQVLDEADEVNDE-TEKLDQDLTGQVSFKDVDFQ-YVAD- 361

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                    PL + FN +      V  +VG  G GKTT+I  L +        + +   D
Sbjct: 362 --------KPLIRNFNLEVKPGEMV-AIVGPTGAGKTTLINLLMRFYDVTKGAITVDGHD 412

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEI------GSDAAALAYEAFKQAQAKKVDVLI 198
             + +  D  K +       ++            +  A   E  + A+A  VD  I
Sbjct: 413 IRQLSRQDYRKQFGMVLQDAWLYEGTIKENLRFGNLQATDEEIVEAAKAANVDHFI 468


>gi|327462758|gb|EGF09080.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
           sanguinis SK1057]
          Length = 712

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 21/155 (13%)

Query: 2   SNQKVASESLSWIRKL--TKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
           + Q+ A E   +   L           K++    D+  +  ++D V E +E +      G
Sbjct: 339 NKQEAAVEKEDFEAALNAKTRIEELEKKIQNHTEDMKVTATVND-VAESVERM-----TG 392

Query: 60  VAVAQ---KIVEELL---TKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV 113
           V V+Q     +E L     +  AK +   + +  V+  I +      +      S     
Sbjct: 393 VPVSQMGASDIERLKGMNDRLKAKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGS----- 447

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
            L VG  GVGKT +  +L+  +   G K  +   D
Sbjct: 448 FLFVGPTGVGKTELAKQLA--LDMFGTKEAIIRLD 480


>gi|312794885|ref|YP_004027807.1| Chromosome partitioning protein parA [Burkholderia rhizoxinica HKI
           454]
 gi|312166660|emb|CBW73663.1| Chromosome partitioning protein parA [Burkholderia rhizoxinica HKI
           454]
          Length = 280

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           GVGKTT    L+  +   G +V+L   D         +    D+ +      E+  D  A
Sbjct: 37  GVGKTTTSVNLAASLVMQGQRVLLIDLD---PQGNATMGSGVDKANCANTVYEVLVDGVA 93

Query: 181 LAYEAFKQAQAKKVDVL 197
           +A +A  +A     DVL
Sbjct: 94  IA-DACTRAPTSGYDVL 109


>gi|312873593|ref|ZP_07733640.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 2052A-d]
 gi|312875023|ref|ZP_07735041.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 2053A-b]
 gi|311089418|gb|EFQ47844.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 2053A-b]
 gi|311090846|gb|EFQ49243.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 2052A-d]
          Length = 713

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 72/181 (39%), Gaps = 28/181 (15%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLS 100
            E+L+D  +  D    +++K++E+++ ++    V       Q  L ++++ + K ++   
Sbjct: 370 YEKLKDQKVDPDKTPVISEKVMEKIIEEKTNIPVGDLQKQEQMQLKNLADDLKKHIIGQD 429

Query: 101 KPFN------------WDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           K  +            ++ S RP    L VG  GVGKT +  +L+K     G +  +   
Sbjct: 430 KAVDVISKAIRRNRVGFNKSGRPIGSFLFVGPTGVGKTELAKQLAK--QMFGTEKSMIRF 487

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D          +     + +  + S  G      A +  ++ +     +++ D   + H 
Sbjct: 488 DMS--------EYMEQYSVSKLIGSAPGYVGYEEAGQLTEKVRHNPYSLILFDEIEKAHP 539

Query: 208 N 208
           +
Sbjct: 540 D 540


>gi|309810056|ref|ZP_07703902.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners SPIN 2503V10-D]
 gi|312872141|ref|ZP_07732214.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 2062A-h1]
 gi|325913392|ref|ZP_08175759.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners UPII 60-B]
 gi|329919675|ref|ZP_08276653.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners SPIN 1401G]
 gi|308169555|gb|EFO71602.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners SPIN 2503V10-D]
 gi|311092225|gb|EFQ50596.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 2062A-h1]
 gi|325477318|gb|EGC80463.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners UPII 60-B]
 gi|328937327|gb|EGG33751.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners SPIN 1401G]
          Length = 713

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 72/181 (39%), Gaps = 28/181 (15%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLS 100
            E+L+D  +  D    +++K++E+++ ++    V       Q  L ++++ + K ++   
Sbjct: 370 YEKLKDQKVDPDKTPVISEKVMEKIIEEKTNIPVGDLQKQEQMQLKNLADDLKKHIIGQD 429

Query: 101 KPFN------------WDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           K  +            ++ S RP    L VG  GVGKT +  +L+K     G +  +   
Sbjct: 430 KAVDVISKAIRRNRVGFNKSGRPIGSFLFVGPTGVGKTELAKQLAK--QMFGTEKSMIRF 487

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D          +     + +  + S  G      A +  ++ +     +++ D   + H 
Sbjct: 488 DMS--------EYMEQYSVSKLIGSAPGYVGYEEAGQLTEKVRHNPYSLILFDEIEKAHP 539

Query: 208 N 208
           +
Sbjct: 540 D 540


>gi|309803517|ref|ZP_07697610.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LactinV 11V1-d]
 gi|312870950|ref|ZP_07731055.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 3008A-a]
 gi|325911639|ref|ZP_08174047.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners UPII 143-D]
 gi|308164401|gb|EFO66655.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LactinV 11V1-d]
 gi|311093640|gb|EFQ51979.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners LEAF 3008A-a]
 gi|325476625|gb|EGC79783.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
           iners UPII 143-D]
          Length = 713

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 72/181 (39%), Gaps = 28/181 (15%)

Query: 46  REELEDLLIRSDIGVAVAQKIVEELLTKRYAKDV-----SVQRVLYDVSELIHKMLMPLS 100
            E+L+D  +  D    +++K++E+++ ++    V       Q  L ++++ + K ++   
Sbjct: 370 YEKLKDQKVDPDKTPVISEKVMEKIIEEKTNIPVGDLQKQEQMQLKNLADDLKKHIIGQD 429

Query: 101 KPFN------------WDFSHRPHV-ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAG 147
           K  +            ++ S RP    L VG  GVGKT +  +L+K     G +  +   
Sbjct: 430 KAVDVISKAIRRNRVGFNKSGRPIGSFLFVGPTGVGKTELAKQLAK--QMFGTEKSMIRF 487

Query: 148 DTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHN 207
           D          +     + +  + S  G      A +  ++ +     +++ D   + H 
Sbjct: 488 DMS--------EYMEQYSVSKLIGSAPGYVGYEEAGQLTEKVRHNPYSLILFDEIEKAHP 539

Query: 208 N 208
           +
Sbjct: 540 D 540


>gi|297850934|ref|XP_002893348.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339190|gb|EFH69607.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1488

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 4/184 (2%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGV 122
             +++  ++ +  A+  +    + D    +   +  L K  N+  +    ++ + G+ G+
Sbjct: 263 VDELIGLVVKRVLAQVRNTPEKVADYIVGLESCVEDLVKLLNFKSTSGVQILGLYGMGGI 322

Query: 123 GKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ--LKIWADRTSADFVCSEIGSDAAA 180
           GKTT + K S               ++ R  + DQ  L         +        +  +
Sbjct: 323 GKTT-LAK-SFYNKIIVNFKHRVFIESVREKSSDQDGLVNLQKTLIKELFGLVPEIEDVS 380

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDAT 240
              E  K+   +K  ++++D    +   + L+            +       +L  L   
Sbjct: 381 RGLEKIKENVHEKKTIVVLDDVDHIDQVNALVGETKWYGEGSLIVITTRDSEILSKLSVN 440

Query: 241 TGQN 244
               
Sbjct: 441 QQYE 444


>gi|283851793|ref|ZP_06369071.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B]
 gi|283572913|gb|EFC20895.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B]
          Length = 283

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
           +  L D++E I        KP +   + +  V+++ G  GVGK+TV   L+  ++ AG +
Sbjct: 3   ENGLRDLNEEIR------PKPASGLDAVKAVVVVLSGKGGVGKSTVAANLAAGLAMAGRR 56

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSAD 168
             L   D    +    LK+   R   +
Sbjct: 57  TGLLDVDVHGPSIPRLLKLTGSRPGME 83


>gi|269977144|ref|ZP_06184117.1| conserved hypothetical protein [Mobiluncus mulieris 28-1]
 gi|306818921|ref|ZP_07452642.1| possible thiamine pyrophosphate-requiring enzyme [Mobiluncus
           mulieris ATCC 35239]
 gi|307700743|ref|ZP_07637768.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|269934447|gb|EEZ91008.1| conserved hypothetical protein [Mobiluncus mulieris 28-1]
 gi|304648323|gb|EFM45627.1| possible thiamine pyrophosphate-requiring enzyme [Mobiluncus
           mulieris ATCC 35239]
 gi|307613738|gb|EFN92982.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 334

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 31/164 (18%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           Q +       + KL +   + S +L E    + +S R+ D     + D L+ + + VAV 
Sbjct: 31  QPIGETLTGQVDKLREDRNALSNQLAESKEKLTTSERVSDAFARRIFDKLL-AGVNVAVV 89

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNW-----DFSHRPHVILVVG 118
                 +L     +DV        VSE I +    +S   N          + +   + G
Sbjct: 90  ------VLPGADGEDV------KKVSEKIGQAGGAVSAQINLREEFFSPEKKAYREALSG 137

Query: 119 -----VNGVGKTTV--------IGKLSKKMSDAGLKVMLAAGDT 149
                +    + T         +G+L+    +  L  +L+  DT
Sbjct: 138 QITQYLEDTTRVTTPEDTLAAAVGQLAFIGQNEALTGILSVADT 181


>gi|260589304|ref|ZP_05855217.1| ABC transporter, ATP-binding protein [Blautia hansenii DSM 20583]
 gi|331082710|ref|ZP_08331833.1| hypothetical protein HMPREF0992_00757 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540385|gb|EEX20954.1| ABC transporter, ATP-binding protein [Blautia hansenii DSM 20583]
 gi|330400329|gb|EGG79971.1| hypothetical protein HMPREF0992_00757 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 293

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 113 VILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI 160
           V+  +G NG GKTT I  L   +S    +  +   D FR+A+  Q+K+
Sbjct: 31  VVGFLGSNGAGKTTTIRHLMGFISPQKGRAQILNMDCFRNASCVQMKV 78


>gi|219121783|ref|XP_002181239.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407225|gb|EEC47162.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 303

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM-PLS 100
           +D + EEL+        G  + +KI  E++             L D  + I +++  P+ 
Sbjct: 1   EDELPEELKR------FGKDLVEKIENEIMDAGDPVTFDDIAGLLDAKQTIQEVICWPMK 54

Query: 101 KP-FNWDFSHRPHVILVVGVNGVGKTTVIGK-LSK 133
           +P         P+ +L+ G  G GKT  IGK ++ 
Sbjct: 55  RPDLFTGLRRAPNGLLLYGPPGTGKTL-IGKAIAH 88


>gi|171680251|ref|XP_001905071.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939752|emb|CAP64978.1| unnamed protein product [Podospora anserina S mat+]
          Length = 998

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K  E +     A + S  + L +  E +        +           V++VVG  G GK
Sbjct: 273 KFSEHMKKSEGASNFSQSKSLKEQREYLPAF---AVREDLLRVIRDNQVVIVVGETGSGK 329

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTF--RSAAIDQLKIWADRTSA 167
           TT   +L++ + + G   +   G T   R AA+   K  A+    
Sbjct: 330 TT---QLAQFLYEDGYGKVGMIGCTQPRRVAAMSVAKRVAEEMEV 371


>gi|167725092|ref|ZP_02408328.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Burkholderia pseudomallei DM98]
          Length = 717

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 63  AQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPH-VILVVGVNG 121
             K+ E L  +   +       +  ++E I      L  P       +PH V L+ G +G
Sbjct: 407 VLKLAETLAERVVGQ----PHAVELIAERIQTARARLDDPA------KPHGVFLLCGPSG 456

Query: 122 VGKT-TVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAA 180
           VGKT T +  L++ +       +      F+ A           T +    +  G     
Sbjct: 457 VGKTETALA-LAETLYGGEHNAITINMSEFQEA----------HTVSTLKGAPPGYVGYG 505

Query: 181 LAYEAFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVL 237
                 +  + +   V+++D   + H +             +   +       ++V+ + 
Sbjct: 506 QGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLT 565

Query: 238 DATTGQNALR 247
                +  ++
Sbjct: 566 SNVGSERVMQ 575


>gi|163750818|ref|ZP_02158053.1| cell division protein FtsH [Shewanella benthica KT99]
 gi|161329513|gb|EDQ00507.1| cell division protein FtsH [Shewanella benthica KT99]
          Length = 654

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   K    DV+      +  + +   L   ++ F       P  IL+VG  G GK
Sbjct: 142 KLMSEDQIKTTFGDVAGCDEAKEDVKELVDYLKEPTR-FEKLGGRIPTGILLVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K +S            +                  +       S    +  +
Sbjct: 201 T----LLAKAISGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR                + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKSAPCIIF-IDEIDAVGRQRGAGVGGGNDEREQTLNQLLVEMDGFEGNEGVIVIAATN 300

Query: 242 GQNALRQV 249
             + L   
Sbjct: 301 RPDVLDSA 308


>gi|152991151|ref|YP_001356873.1| cell division protein FtsH [Nitratiruptor sp. SB155-2]
 gi|151423012|dbj|BAF70516.1| cell division protein FtsH [Nitratiruptor sp. SB155-2]
          Length = 660

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 58  IGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVV 117
           +G+  A+K++     K    DV+      +  + I   L    +      +  P  +L+V
Sbjct: 165 LGMGSAKKLINSERPKVKFDDVAGVEEAKEEVKEIVDFLKHPQRYIRLG-AKIPKGVLLV 223

Query: 118 GVNGVGKTTVIGK 130
           G  G GKT  + K
Sbjct: 224 GPPGTGKTL-LAK 235


>gi|153813767|ref|ZP_01966435.1| hypothetical protein RUMOBE_04201 [Ruminococcus obeum ATCC 29174]
 gi|149830140|gb|EDM85234.1| hypothetical protein RUMOBE_04201 [Ruminococcus obeum ATCC 29174]
          Length = 518

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  ++L++  +L+     PLSKP N+    R   I +VG NG+GKTT
Sbjct: 320 TPGKMLFETHDLVIGYDEPLSKPLNFTME-RGQKIALVGTNGIGKTT 365


>gi|156100021|ref|XP_001615738.1| ATP-dependent metalloprotease [Plasmodium vivax SaI-1]
 gi|148804612|gb|EDL46011.1| ATP-dependent metalloprotease, putative [Plasmodium vivax]
          Length = 702

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 63/202 (31%), Gaps = 26/202 (12%)

Query: 59  GVAVA-QKIV--EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVIL 115
           G+ V  +KI+  E +  K    DV     +    E I   L    K F    +  P  IL
Sbjct: 231 GIGVVNKKIIPVENV--KVTFADVKGCDEVKQELEEIIDYLKNSDK-FTKIGAKLPKGIL 287

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           + G  G GKT     +++ ++                A +  L+         FV     
Sbjct: 288 LSGEPGTGKT----LIARAIAGE--------------ANVPFLQASGSEFEEMFVGVGAR 329

Query: 176 SDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
                             +D   ID  G   +N    A    + ++L  LD    +  + 
Sbjct: 330 RIRELFQAAKKHAPCIVFIDE--IDAVGSKRSNRDNSAVRMTLNQLLVELDGFEQNEGIV 387

Query: 236 VLDATTGQNALRQVEMFHAVAG 257
           V+ AT    +L +  +      
Sbjct: 388 VICATNFPQSLDKALVRPGRLD 409


>gi|146180922|ref|XP_001021715.2| ATPase, AAA family protein [Tetrahymena thermophila]
 gi|146144400|gb|EAS01469.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
          Length = 827

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 42  DDGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRV---LYDVSELIHKMLM- 97
           +  V  ++++  I++D  +   + + +  L K   ++ S +     +  + ++I + +  
Sbjct: 497 EQNVLGKIQE--IQADENLKKTEALTDAKLKKAQLEEPSTKMPDPSIAQIRQIIAEYIAF 554

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           PL   +  +   + +    +G  G GKT  +
Sbjct: 555 PLGSKYAKEKLDKMNYFFFMGPRGSGKTLAV 585


>gi|116075795|ref|ZP_01473054.1| MRP protein-like [Synechococcus sp. RS9916]
 gi|116067110|gb|EAU72865.1| MRP protein-like [Synechococcus sp. RS9916]
          Length = 364

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 65/205 (31%), Gaps = 27/205 (13%)

Query: 118 GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSD 177
           G  GVGK+TV   L+  ++  GL+V L   D +   A   L +       +   SE    
Sbjct: 118 GKGGVGKSTVAVNLACALARQGLRVGLLDADIYGPNAPTMLGVADRTPEVEGSGSEQRMT 177

Query: 178 AAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQV- 236
                  A           L+ID    +     ++ G   +IR            VL V 
Sbjct: 178 PIESCGVAMVSMG------LLIDPDQPVIWRGPMLNG---IIRQFLYQVTWGERDVLVVD 228

Query: 237 LDATTGQNALRQVEMFHAVAGTTGLIMTKMD-----GTARGGGLIPIVVTHKIPVYFLGV 291
           L   TG   L             G+++           AR G  + +     IPV  LGV
Sbjct: 229 LPPGTGDAQLSLA----QAVPMAGVVIVTTPQQVALQDARRG--LAMFRQMSIPV--LGV 280

Query: 292 GEGINDLEPFVAKDFSAV--ITGCL 314
            E ++   P           + G  
Sbjct: 281 VENMSAFIP--PDQPEKRYALFGEG 303


>gi|115497286|ref|NP_001070112.1| GTP-binding protein ARD-1 [Danio rerio]
 gi|115313206|gb|AAI24362.1| Zgc:153463 [Danio rerio]
 gi|182889164|gb|AAI64727.1| Zgc:153463 protein [Danio rerio]
          Length = 423

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 50  EDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSH 109
           E  L + D  V +A++ +  LL        ++Q+     +EL   + +    P  +   +
Sbjct: 192 EKTLQQDDCRVVLAKQEINRLLE-------TLQKQQQQFTELADHIQLDAGIPVTFTKDN 244

Query: 110 RPHV-----ILVV--GVNGVGKTTVIGKL 131
           R H+     I VV  G++G GKTT++ KL
Sbjct: 245 RVHIGPKMEIRVVTLGLDGAGKTTILFKL 273


>gi|39939107|ref|NP_950873.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722216|dbj|BAD04706.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 747

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 96  LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI-GKLSKKMSDAGLKVMLAAGDTFRSAA 154
           L  L+KP     +       +    G GKTT +  K++  +    L        TF + A
Sbjct: 9   LEKLNKPQLAAVTSNAKSFYLAAGAGTGKTTTLNAKIAYLIEQKNLPSNQILALTFTNKA 68

Query: 155 IDQLK 159
             Q++
Sbjct: 69  AKQMQ 73


>gi|13471590|ref|NP_103156.1| putative ABC transporter ATP-binding protein [Mesorhizobium loti
           MAFF303099]
 gi|14022332|dbj|BAB48942.1| mll1607 [Mesorhizobium loti MAFF303099]
          Length = 549

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 13/103 (12%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELI---HKMLMPLSKPF-------NWDFSHRPHVIL-V 116
           EEL+ +   +  +  +++   SE +      +  L+K F       N  F   P  I+ V
Sbjct: 289 EELVEQSQNRKPTDTQIVIPSSERLGNVVIEVEGLNKGFGDELLIENLSFRLPPGGIVGV 348

Query: 117 VGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLK 159
           +G NG GKTT+    +    +      +  G+T +   +DQ +
Sbjct: 349 IGPNGAGKTTLFKTFTG--QEKPDAGTVRIGETVKLGYVDQSR 389


>gi|14601042|ref|NP_147568.1| hypothetical protein APE_0880 [Aeropyrum pernix K1]
 gi|5104547|dbj|BAA79862.1| hypothetical protein [Aeropyrum pernix K1]
          Length = 534

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA-AID 156
           P+ +  +   +   +VI+++G  G GKT V+  +       G      +GD F+ A A +
Sbjct: 38  PIFEAISKSGALAKNVIIILGGRGCGKTLVMRYIKHYFEPEGWDYKYFSGDQFKEADAQE 97

Query: 157 QLKIWADRTSA----DFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
            +KI ++        +     +G D    A EA +     ++  L++D AGR
Sbjct: 98  LMKIISETRDLLENSEDYKVIVGIDDVVEASEAIRDTIKNQLVPLVVDYAGR 149


>gi|330969644|gb|EGH69710.1| peptidase M41, FtsH [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 634

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 24/186 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           +++ E   K    DV+      +    + + L    K F       P  +L+VG  G GK
Sbjct: 142 RLLSEDQVKTTLADVAGCDEAKEEVGELVEFLRDPGK-FQRLGGRIPRGVLMVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     ++K ++     +      +                  +       S    +  +
Sbjct: 201 T----LIAKAIAGEAKVLFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKHAPCIIF-IDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATN 300

Query: 242 GQNALR 247
             + L 
Sbjct: 301 RPDVLD 306


>gi|328946133|gb|EGG40278.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Streptococcus sanguinis SK1087]
          Length = 592

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 19/176 (10%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
           + +T +    +      + +  +L  +D +     +K+ ++L  +   KDV  Q  + D 
Sbjct: 305 QNLTQLAGQLQSAKSSLDRIFQVLDEADEVNDE-TEKLDQDLTGQVSFKDVDFQ-YVAD- 361

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
                    PL + FN +      V  +VG  G GKTT+I  L +        + +   D
Sbjct: 362 --------KPLIRNFNLEVKPGEMV-AIVGPTGAGKTTLINLLMRFYDVTKGAITVDGHD 412

Query: 149 TFRSAAIDQLKIWADRTSADFVCSEI------GSDAAALAYEAFKQAQAKKVDVLI 198
               +  D  K +       ++            +  A   E  + A+A  VD  I
Sbjct: 413 IRHLSRQDYRKQFGMVLQDAWLYEGTIKENLRFGNLQATDEEIVEAAKAANVDHFI 468


>gi|325924511|ref|ZP_08186030.1| membrane protease FtsH catalytic subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325545006|gb|EGD16341.1| membrane protease FtsH catalytic subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 646

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 52/169 (30%), Gaps = 25/169 (14%)

Query: 82  QRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLK 141
                +VSEL+  +  P    F       P  +L+VG  G GKT     L++ ++     
Sbjct: 171 DEAKEEVSELVDFLRDP--TKFTKLGGKIPRGVLMVGPPGTGKT----LLARAIAGEAKV 224

Query: 142 VMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDT 201
              +   +                  +       S    +  +A K A      +  ID 
Sbjct: 225 PFFSISGS---------------DFVEMFVGVGASRVRDMFEQAKKHAPCIIF-IDEIDA 268

Query: 202 AGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
            GR     +          + ++L  +D       + V+ AT   + L 
Sbjct: 269 VGRHRGAGLGGGHDEREQTLNQLLVEMDGFEGGEGVIVIAATNRPDVLD 317


>gi|311744477|ref|ZP_07718278.1| chaperone protein ClpB [Aeromicrobium marinum DSM 15272]
 gi|311312282|gb|EFQ82198.1| chaperone protein ClpB [Aeromicrobium marinum DSM 15272]
          Length = 872

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 82/240 (34%), Gaps = 44/240 (18%)

Query: 68  EELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHV-ILVVGVNGVGKTT 126
           +EL  +   +    +R +  VS+ + +    +S P       RP    L +G  GVGKT 
Sbjct: 568 DELGRRLIGQ----RRAVEAVSDAVRRSRAGISDP------DRPTGSFLFLGPTGVGKTE 617

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSA-DFVCSEIGSDAAALAYEA 185
           +   L+  +            D  R+     +  + ++ S    V +  G        + 
Sbjct: 618 LAKTLAAFL-----------FDDERAMIRIDMSEYGEKHSVSRLVGAPPGYVGYDEGGQL 666

Query: 186 FKQAQAKKVDVLIIDTAGRLHNN--SILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
            +  + +   V+++D   + H +   IL+  +        +        V+ VL +  G 
Sbjct: 667 TEAVRRRPYSVVLLDEVEKAHADVFDILLQVLDDGRLTDGQGRTVDFRHVILVLTSNLGS 726

Query: 244 NALRQVEMFHAVAGTTGLIMTKMDGTARGGGLIPIVVTHKIPVYFLGVGEGINDLEPFVA 303
             L                   +D  AR G ++ +V     P  FL     ++++  F  
Sbjct: 727 AFLSDAT---------------LDDGARKGAVMDLVKVAFKP-EFL---NRLDEIVTFDP 767


>gi|292493674|ref|YP_003529113.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4]
 gi|291582269|gb|ADE16726.1| ATP-dependent metalloprotease FtsH [Nitrosococcus halophilus Nc4]
          Length = 639

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 25/166 (15%)

Query: 87  DVSELIHKMLMPLSKP--FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVML 144
           +  E + +++  L  P  F       P  +L+VG  G GKT     L++ ++        
Sbjct: 160 EAKEEVKELVDFLRDPGRFQKLGGKIPRGVLMVGPPGTGKT----LLARAIAGEAKVPFF 215

Query: 145 AAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGR 204
               +                  +       S    +   A K A      +  ID  GR
Sbjct: 216 TISGS---------------DFVEMFVGVGASRVRDMFENAKKHAPCIIF-IDEIDAVGR 259

Query: 205 LH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNALR 247
                           + ++L  +D    +  + V+ AT   + L 
Sbjct: 260 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATNRPDVLD 305


>gi|291287619|ref|YP_003504435.1| SH3 type 3 domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884779|gb|ADD68479.1| SH3 type 3 domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 503

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKI-W 161
             +  + R   +L+ G+ G GKT        K+     K    +   +  ++ D+L +  
Sbjct: 35  LEYGLNSRKGFMLLTGLKGTGKTMTC-----KILKENAKDCNVSMTRYEDSSTDKLMLDI 89

Query: 162 ADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRV 221
                 +   ++       +      Q +  K +++I+D A  +  +  L      M   
Sbjct: 90  CKGFGLEVEEADRQELFGLIMEYFVDQYKEGKNNLIIVDNAENIS-DESLQMLNKFMEIE 148

Query: 222 LKR 224
           +++
Sbjct: 149 IEK 151


>gi|240949095|ref|ZP_04753443.1| ATP-dependant Clp protease chain B [Actinobacillus minor NM305]
 gi|240296490|gb|EER47122.1| ATP-dependant Clp protease chain B [Actinobacillus minor NM305]
          Length = 857

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 79/207 (38%), Gaps = 17/207 (8%)

Query: 4   QKVASESLSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA 63
           +K+       I  L K       + +EG  + +   ++ D   EE+ ++L ++  G+ V+
Sbjct: 494 EKMGELQYGKIPALEKQLQEAVKREEEGGDNHLLRTKVTD---EEIAEVLSKA-TGIPVS 549

Query: 64  QKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP-FNWDFSHRPHV-ILVVGVNG 121
            K++E    K    +  +   +   +E +  +   + +        ++P    L +G  G
Sbjct: 550 -KMIEGEKDKLLRMENVLHTRVIGQNEAVEAVANAIRRSRAGLSDPNKPIGSFLFLGPTG 608

Query: 122 VGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAAL 181
           VGKT +   L+  + D    +        R    + ++  +           +G +    
Sbjct: 609 VGKTELCKTLANFLFDDPDAM-------VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGY 661

Query: 182 AYEAFKQAQAKKVDVLIIDTAGRLHNN 208
             EA ++   +   V+++D   + H +
Sbjct: 662 LTEAVRR---RPYSVVLLDEVEKAHPD 685


>gi|238026784|ref|YP_002911015.1| FtsH endopeptidase [Burkholderia glumae BGR1]
 gi|237875978|gb|ACR28311.1| FtsH endopeptidase [Burkholderia glumae BGR1]
          Length = 629

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           ++++E        DV+      +    +   L    K F       P  +L+VG  G GK
Sbjct: 142 RLIDENNNAVNFADVAGCDEAKEEVSELVDFLRDPQK-FQKLGGRIPRGVLLVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L++ ++        +   +                  +       +    +  +
Sbjct: 201 T----LLARAIAGEAKVPFFSISGS---------------DFVEMFVGVGAARVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLHNNSI---LMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR     +          + ++L  +D    +S + V+ AT 
Sbjct: 242 AKKHAPCIVF-IDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEANSGVIVIAATN 300

Query: 242 GQNALRQV 249
             + L + 
Sbjct: 301 RSDVLDKA 308


>gi|269124648|ref|YP_003298018.1| daunorubicin resistance ABC transporter ATPase subunit
           [Thermomonospora curvata DSM 43183]
 gi|268309606|gb|ACY95980.1| daunorubicin resistance ABC transporter ATPase subunit
           [Thermomonospora curvata DSM 43183]
          Length = 321

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIW 161
            +G NG GKTT I  L    + +G +  +A  D        Q++  
Sbjct: 46  FLGPNGAGKTTTIAMLCTLTAPSGGRAEIAGHDVV--TEAHQVRRH 89


>gi|257065865|ref|YP_003152121.1| ATPase AAA-2 domain-containing protein [Anaerococcus prevotii DSM
           20548]
 gi|256797745|gb|ACV28400.1| ATPase AAA-2 domain protein [Anaerococcus prevotii DSM 20548]
          Length = 364

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 11/116 (9%)

Query: 87  DVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV---IGKLSKKMSDAGLKVM 143
           D  + I K L  L K +N   + +P V+++ G  GVGKT     I K+  +        M
Sbjct: 134 DARDDIAKQLYSLVKGYN---NRKPIVLMLYGPTGVGKTETAKFISKILNQNLFRKQFSM 190

Query: 144 LAAGD--TFRSAAIDQLKIWADRT---SADFVCSEIGSDAAALAYEAFKQAQAKKV 194
               D   +   A  Q K  A       ++ +  +       L Y+AF Q   + +
Sbjct: 191 NQTNDQINYVFGASPQDKSLARDLLNRESNVILFDEFDKMHPLFYQAFYQMFDEGI 246


>gi|255100055|ref|ZP_05329032.1| putative ABC transporter, permease/ATP-binding protein [Clostridium
           difficile QCD-63q42]
          Length = 620

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGV 119
                VEE+  +  +K +S+ +       +         L K  N + +     I +VG 
Sbjct: 351 TVMDEVEEIKDEESSKVISMPKGKVQFEHVKFGYSDDFILMKDININLNAG-DKIAIVGP 409

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVML 144
            G GKTT++  L +     G ++ +
Sbjct: 410 TGAGKTTLVNLLMRFYEIQGGRITI 434


>gi|157280363|gb|ABV29178.1| disease resistance protein R3a-like protein [Solanum demissum]
          Length = 1270

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 19/127 (14%)

Query: 40  RLDDGVREELEDLLIR----SDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKM 95
            + + + E +E L I      D+G+   +  V  L  +      +      D+     + 
Sbjct: 129 NIKEKLEETIETLKILQKQIGDLGL--TEHFV--LTKQETRTPSTSVVDESDIFGRQKEK 184

Query: 96  LMPLSKPFNWDFSHRP-HVILVVGVNGVGKTTVIGKLSKK-----MSDAGLKVMLAAG-- 147
            + + +  + D S +   V+ +VG+ GVGKTT + K +           GLK        
Sbjct: 185 KVLIDRLLSEDASGKKLTVVPIVGMGGVGKTT-LAK-AVYNDMRVQKHFGLKAWFCVSEA 242

Query: 148 -DTFRSA 153
            D FR  
Sbjct: 243 YDAFRIT 249


>gi|148241734|ref|YP_001226891.1| AAA family ATPase [Synechococcus sp. RCC307]
 gi|147850044|emb|CAK27538.1| ATPase of the AAA+ family [Synechococcus sp. RCC307]
          Length = 488

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 11/91 (12%)

Query: 43  DGVREELEDLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKP 102
           D V EE    L RSD+           L     A D S    L  +   + +  +  S  
Sbjct: 203 DDVLEEKRLALGRSDL-----------LEYCPTAADPSEIGGLNQLKTWLDRRRLAFSAE 251

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSK 133
            +      P  +L+VG  G GK+     ++ 
Sbjct: 252 AHAYGLPHPRGVLLVGPQGTGKSLTAKAIAH 282


>gi|126698602|ref|YP_001087499.1| putative ABC transporter permease/ATP-binding protein [Clostridium
           difficile 630]
 gi|115250039|emb|CAJ67859.1| ABC-type transport system, multidrug-family ATP-binding
           protein/permease [Clostridium difficile]
          Length = 620

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 62  VAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGV 119
                VEE+  +  +K +S+ +       +         L K  N + +     I +VG 
Sbjct: 351 TVMDEVEEIKDEESSKVISMPKGKVQFEHVKFGYSDDFILMKDININLNAG-DKIAIVGP 409

Query: 120 NGVGKTTVIGKLSKKMSDAGLKVML 144
            G GKTT++  L +     G ++ +
Sbjct: 410 TGAGKTTLVNLLMRFYEIQGGRITI 434


>gi|73667304|ref|YP_303320.1| ABC transporter, transmembrane region:ABC transporter [Ehrlichia
           canis str. Jake]
 gi|72394445|gb|AAZ68722.1| ABC transporter, transmembrane region:ABC transporter [Ehrlichia
           canis str. Jake]
          Length = 581

 Score = 36.4 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 16/107 (14%)

Query: 22  ASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIGVAVA--QKIVEELLTKRYAKDV 79
           A +   + +   DI  + R+ + + + L      SDI V VA  Q+I +E+  +    DV
Sbjct: 283 AGSVNNMGDNFNDIQKAIRIAEDISKILSM---SSDI-VEVAHPQEI-KEIKNRISINDV 337

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +        +  +  +       F  D      V+ +VG +G GK+T
Sbjct: 338 TFNYPSKPDTPALKNV------SFTIDRGQ---VVALVGPSGSGKST 375


>gi|312865118|ref|ZP_07725346.1| ATPase, AAA family [Streptococcus downei F0415]
 gi|311099229|gb|EFQ57445.1| ATPase, AAA family [Streptococcus downei F0415]
          Length = 369

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 77  KDVSVQRVLYDVSELIHKM-LMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           K+++       V +   K+ L+    P   +   +P VIL+ G +GVGKT     L+K +
Sbjct: 128 KNLNKDFSKSIVGQENAKLELLQALFPLTRENRTKPVVILLYGKSGVGKTETAKYLAKLL 187

Query: 136 SDA 138
           ++ 
Sbjct: 188 NEN 190


>gi|294142067|ref|YP_003558045.1| cell division protein FtsH [Shewanella violacea DSS12]
 gi|293328536|dbj|BAJ03267.1| cell division protein FtsH [Shewanella violacea DSS12]
          Length = 654

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 24/188 (12%)

Query: 65  KIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGK 124
           K++ E   K    DV+      +  + +   L   ++ F       P  IL+VG  G GK
Sbjct: 142 KLMSEDQIKTTFGDVAGCDEAKEDVKELVDYLKEPTR-FQKLGGRIPTGILLVGPPGTGK 200

Query: 125 TTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYE 184
           T     L+K ++            +                  +       S    +  +
Sbjct: 201 T----LLAKAIAGEAKVPFFTISGS---------------DFVEMFVGVGASRVRDMFEQ 241

Query: 185 AFKQAQAKKVDVLIIDTAGRLH---NNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATT 241
           A K A      +  ID  GR                + ++L  +D    +  + V+ AT 
Sbjct: 242 AKKSAPCIIF-IDEIDAVGRQRGAGVGGGHDEREQTLNQMLVEMDGFEGNEGVIVIAATN 300

Query: 242 GQNALRQV 249
             + L   
Sbjct: 301 RPDVLDAA 308


>gi|257455745|ref|ZP_05620973.1| twitching motility protein PilT [Enhydrobacter aerosaccus SK60]
 gi|257446873|gb|EEV21888.1| twitching motility protein PilT [Enhydrobacter aerosaccus SK60]
          Length = 383

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 46/155 (29%), Gaps = 25/155 (16%)

Query: 103 FNWDFSHRPHVILVVGVNGVGKTTVIGKLSKK--MSDAGLKVMLAAGDTFRSAAIDQLKI 160
            N     +  ++L+VG  G GK+T    L+      +   +  +   +      I+ L  
Sbjct: 116 LNEIAMKKRGIVLLVGATGTGKSTT---LAAMMGYRNENSRGHIITIED----PIEYLHE 168

Query: 161 WADRTSADFVCSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIR 220
                              A    A +QA     DV++I   G +     +   I     
Sbjct: 169 HKGCIITQREVGIDTKSFEAGLKNALRQAP----DVILI---GEIRTRETMDYAIQ---- 217

Query: 221 VLKRLDPHAPHSVLQVLDATTGQNALRQVEMFHAV 255
                     H V   L AT    AL ++  F   
Sbjct: 218 -----YAETGHLVFATLHATNANQALERIIHFFEA 247


>gi|300023664|ref|YP_003756275.1| type II secretion system protein E [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525485|gb|ADJ23954.1| type II secretion system protein E [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 554

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 111 PHVILVV-GVNGVGKTTVIGKLSKKMSDAGLKVMLAAGD 148
           P+ +++V G  G GKTT +   +  + + G + +L   D
Sbjct: 305 PYGLMLVTGPTGSGKTTTLAT-ALSLLNEGHRKILTIED 342


>gi|325983081|ref|YP_004295483.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosomonas
           sp. AL212]
 gi|325532600|gb|ADZ27321.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Nitrosomonas
           sp. AL212]
          Length = 425

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 42  DDGVREELE----DLLIRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLM 97
           +D +REE++      L++S   + V ++I + L      ++ + + +   V     ++  
Sbjct: 43  NDIIREEMQGDEATKLVKS--NLPVPREICQILDQYVIGQESAKKILSVAVYNHYKRLRN 100

Query: 98  PLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                   D       IL+VG  G GKT +   L++ +
Sbjct: 101 IPRSDETDDIELSKSNILLVGPTGSGKTLLAQTLARLL 138


>gi|291298371|ref|YP_003509649.1| thymidylate kinase [Stackebrandtia nassauensis DSM 44728]
 gi|290567591|gb|ADD40556.1| thymidylate kinase [Stackebrandtia nassauensis DSM 44728]
          Length = 707

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID 156
            +P   +       ++  G  G GK+T   KL+  +   G +V+L    T    A +
Sbjct: 458 GRPLVHESPAGGTFVVFEGGEGSGKSTQAVKLAAWLRQRGHEVVL----TREPGATE 510


>gi|223983491|ref|ZP_03633677.1| hypothetical protein HOLDEFILI_00957 [Holdemania filiformis DSM
           12042]
 gi|223964663|gb|EEF68989.1| hypothetical protein HOLDEFILI_00957 [Holdemania filiformis DSM
           12042]
          Length = 613

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 17/160 (10%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRS-AAIDQLKIWADRTSADFV 170
           H  L  G  G GKTT+   L+K ++    +   A  +  RS  AI Q     D    D  
Sbjct: 39  HAYLFCGPRGTGKTTIAKLLAKAVNCEDQQ--NAPCNQCRSCLAIQQGN-HPDIVEIDAA 95

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAP 230
            +    +   L  +        +  V IID          +          L +     P
Sbjct: 96  SNNGVDEVRELIEKVKYAPLEGRYKVYIID---------EVHMMSSGAFNALLKTLEEPP 146

Query: 231 HSVLQVLDATTGQNALRQVEMFHAVAGTTGL----IMTKM 266
             V+ +L  T  Q  L  +         + +    I+T++
Sbjct: 147 SHVIFILATTEPQKVLPTIISRCQRYDFSKVGQNEIITRV 186


>gi|146280814|ref|YP_001170967.1| branched-chain amino acid ABC transporter, ATP-binding protein
           [Pseudomonas stutzeri A1501]
 gi|145569019|gb|ABP78125.1| branched-chain amino acid ABC transporter, ATP-binding protein
           [Pseudomonas stutzeri A1501]
          Length = 266

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 92  IHKMLMPLSKPFNWDFS-HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
           + K         N D   H   V  ++G NG GKTTV   L+K +      + L   D  
Sbjct: 27  LRKEFGGFVAVNNVDLDVHHARVHALIGPNGAGKTTVFNLLTKFLQPTAGSIRLLDHDIT 86

Query: 151 RS 152
           R+
Sbjct: 87  RT 88


>gi|332140749|ref|YP_004426487.1| adenylylsulfate kinase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550771|gb|AEA97489.1| adenylylsulfate kinase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 198

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 106 DFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSA 153
                P V  + G++G GK+T+   L KK+ +      L  GD  R  
Sbjct: 21  KLGQTPRVFWLTGLSGSGKSTLANLLEKKLHEQNKHTYLLDGDNVRHG 68


>gi|327462262|gb|EGF08589.1| multidrug resistance ABC transporter ATP-binding and permease
           protein [Streptococcus sanguinis SK1]
          Length = 592

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 13/107 (12%)

Query: 30  EGITDIISSRRLDDGVREELEDLLIRSD-IGVAVAQKIVEELLTKRYAKDVSVQRVLYDV 88
           + +T +    +      + +  +L  +D +     +K+ ++L  +   KDV+ Q  + D 
Sbjct: 305 QNLTQLAGQLQSAKSSLDRIFQVLDEADEVNDK-TEKLDQDLTGQVSFKDVNFQ-YVAD- 361

Query: 89  SELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
                    PL + FN +      V  +VG  G GKTT+I  L +  
Sbjct: 362 --------KPLIRNFNLEVKPGEMV-AIVGPTGAGKTTLINLLMRFY 399


>gi|321313169|ref|YP_004205456.1| protein tyrosine kinase [Bacillus subtilis BSn5]
 gi|320019443|gb|ADV94429.1| protein tyrosine kinase [Bacillus subtilis BSn5]
          Length = 238

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 14/117 (11%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID--QLKIWADRTSADFVCSEIGSDA 178
           G GK+T    L+   +  G KV+L   D  +        L+     TS     S +    
Sbjct: 56  GEGKSTTAANLAVVFAQQGKKVLLIDADLRKPTVHTAFFLENTVGLTSVLLKKSSMEQ-- 113

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
                 A + +  K +DVL   T+G +  N   +     M  +       A   V+ 
Sbjct: 114 ------AVQASNEKHLDVL---TSGPIPPNPAELLSSKWMKELAYEACA-AYDMVIF 160


>gi|307129596|ref|YP_003881612.1| hypothetical protein Dda3937_01749 [Dickeya dadantii 3937]
 gi|306527125|gb|ADM97055.1| hypothetical protein Dda3937_01749 [Dickeya dadantii 3937]
          Length = 209

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 9/110 (8%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLA--AGDTFRSAAIDQLKIWADRTSADFVCSEIGSDA 178
           GVGKTT    ++  ++  G +V     AG    S A+     +A  T       E     
Sbjct: 12  GVGKTTTATNIALLLAQKGFRVWAIDLAGGLLMSQALQNRSEFASTTPNKIEQKETERVP 71

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPH 228
                       A + D  ++DT         ++ G     RV+  ++PH
Sbjct: 72  THFPG-------ASQYDFAVLDTDDSFTVGEDMLLGNRPSWRVISPINPH 114


>gi|291486197|dbj|BAI87272.1| hypothetical protein BSNT_05533 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 228

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 14/117 (11%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID--QLKIWADRTSADFVCSEIGSDA 178
           G GK+T    L+   +  G KV+L   D  +        L+     TS     S +    
Sbjct: 46  GEGKSTTAANLAVVFAQQGKKVLLIDADLRKPTVHTAFFLENTVGLTSVLLKKSSMEQ-- 103

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
                 A + +  K +DVL   T+G +  N   +     M  +       A   V+ 
Sbjct: 104 ------AVQASNEKHLDVL---TSGPIPPNPAELLSSKWMKELAYEACA-AYDMVIF 150


>gi|268589684|ref|ZP_06123905.1| ATP-dependent helicase HrpA [Providencia rettgeri DSM 1131]
 gi|291314995|gb|EFE55448.1| ATP-dependent helicase HrpA [Providencia rettgeri DSM 1131]
          Length = 1299

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 22/152 (14%)

Query: 67  VEELLTKRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +E+   K   K ++  +++Y        + +   K    D   +  V+++ G  G GKTT
Sbjct: 50  IEKAKQKVEIKRLNAPKIVYP-----DNLPVSQKKDVILDAIKKHQVVIIAGETGSGKTT 104

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRT----------SADFVCSEIGS 176
            I K+  ++   G+   +      R AA       A                F      +
Sbjct: 105 QIPKICLEL-GRGVLGFIGHTQPRRLAARSVASRLAQELECELGTNVGYKVRFSDQVSET 163

Query: 177 DAAALAYEAFKQAQAKK------VDVLIIDTA 202
               L  +    A+ +        D +IID A
Sbjct: 164 TQVKLMTDGILLAELQNDKLLLQYDTIIIDEA 195


>gi|269797567|ref|YP_003311467.1| ATP-dependent metalloprotease FtsH [Veillonella parvula DSM 2008]
 gi|310946772|sp|D1BLD0|FTSH_VEIPT RecName: Full=ATP-dependent zinc metalloprotease FtsH
 gi|269094196|gb|ACZ24187.1| ATP-dependent metalloprotease FtsH [Veillonella parvula DSM 2008]
          Length = 642

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 73  KRYAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGK 130
           K   KDV+         E + + L    K F    +  P  +L+ G  G GKT  + K
Sbjct: 150 KVSFKDVAGAEEAKQELEEVVEFLKDPGK-FTTIGAKIPKGVLLAGPPGTGKTL-LAK 205


>gi|167380809|ref|XP_001735460.1| ATP-dependent RNA helicase [Entamoeba dispar SAW760]
 gi|165902547|gb|EDR28344.1| ATP-dependent RNA helicase, putative [Entamoeba dispar SAW760]
          Length = 947

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 81  VQRVLYDVSELIHKMLMP-LSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAG 139
           + +     +E   K L   L K    +   +  +I+++G  G GKTT   +L++ + + G
Sbjct: 272 ITKEFKKSNEEKRKELPIYLMKNKLMESIKKNQIIILIGETGCGKTT---QLTQYLDEEG 328

Query: 140 LKVMLAAGDTF--RSAAIDQLKIWADRTSA 167
                  G T   R AAI   +  A+    
Sbjct: 329 YSKKGKIGCTQPRRVAAISVSQRVAEEMGV 358


>gi|156087400|ref|XP_001611107.1| cell division protein metalloprotease FtsH [Babesia bovis T2Bo]
 gi|154798360|gb|EDO07539.1| cell division protein metalloprotease FtsH, putative [Babesia
           bovis]
          Length = 658

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 29/186 (15%)

Query: 70  LLTKRYAKDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVI 128
           +L + Y KD+  +     ++ E++  +  P  K ++   +  P  +L+VG  G GKT   
Sbjct: 208 MLERVYFKDIMGIDEAKEELMEVVKFIKQP--KLYHDIGAKIPKGVLLVGPPGTGKTM-- 263

Query: 129 GKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAFKQ 188
             L+K ++       +                       +    +       L  +A KQ
Sbjct: 264 --LAKAVATEANIPFIYTSG---------------PEFVEIFVGQGAQRVRNLFAKARKQ 306

Query: 189 AQAK-KVDVLIIDTAGRLHNNSIL----MAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQ 243
           A     +D   ID  G    +  L          + ++L  +D     + + VL AT   
Sbjct: 307 APCIVFIDE--IDAIGAKRASGSLGGQNREHDQTLNQLLVEMDGFNLSTGITVLAATNRM 364

Query: 244 NALRQV 249
            AL + 
Sbjct: 365 EALDRA 370


>gi|154505684|ref|ZP_02042422.1| hypothetical protein RUMGNA_03223 [Ruminococcus gnavus ATCC 29149]
 gi|153793981|gb|EDN76401.1| hypothetical protein RUMGNA_03223 [Ruminococcus gnavus ATCC 29149]
          Length = 532

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 80  SVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           +  R +++  +L+     PLSKP +     R   I +VG NG+GKTT
Sbjct: 334 TPGRYIFETKDLVIGYDEPLSKPLSLSME-RGQKIALVGANGIGKTT 379


>gi|121594655|ref|YP_986551.1| ATP-dependent helicase HrpA [Acidovorax sp. JS42]
 gi|120606735|gb|ABM42475.1| ATP-dependent helicase HrpA [Acidovorax sp. JS42]
          Length = 1341

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 13/141 (9%)

Query: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF-RSAAIDQLKIWADRTSADFV 170
            VI+V G  G GKTT + K++  +   G     A   T  R     Q +  A  + A  +
Sbjct: 28  QVIIVCGETGSGKTTQLPKIALAL---GRGKCNAPEGTRGRLIGHTQPRRIAASSVAKRI 84

Query: 171 CSEIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIG--KMIRVLKRLDPH 228
             E+ +    +     +       D L    + +L  + IL+A      +++    L   
Sbjct: 85  AEELNTPLGEVVGYKVR-----FQDTLQKGASVKLMTDGILLAETQTDPLLKAYDTLILD 139

Query: 229 APHSVLQVLDATTGQNALRQV 249
             H     +D   G   L+Q+
Sbjct: 140 EAHERSLNIDFLLGY--LKQI 158


>gi|72389650|ref|XP_845120.1| ADP-ribosylation factor [Trypanosoma brucei TREU927]
 gi|62175685|gb|AAX69816.1| ADP-ribosylation factor, putative [Trypanosoma brucei]
 gi|62176663|gb|AAX70766.1| small GTP-binding protein, putative [Trypanosoma brucei]
 gi|70801654|gb|AAZ11561.1| ADP-ribosylation factor, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
 gi|261328487|emb|CBH11464.1| ADP-ribosylation factor, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 194

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLS 132
             F+++   IL +G++  GKTT++GKL+
Sbjct: 14  LGFTNKTGKILFLGLDNAGKTTLLGKLA 41


>gi|83589159|ref|YP_429168.1| AAA ATPase [Moorella thermoacetica ATCC 39073]
 gi|83572073|gb|ABC18625.1| AAA ATPase [Moorella thermoacetica ATCC 39073]
          Length = 370

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 26/183 (14%)

Query: 71  LTKRYAKDVSVQRVL--YDVSELIHKMLMP--LSKPFNWDFSHRPHVILVVGVNGVGKTT 126
           L K Y  D+   +++   +V E+I + L     ++         P  IL+ G  GVGKT 
Sbjct: 77  LAKLYEPDILNPKIILDSEVEEVIEQFLKERMFAEKLITLGIRPPTSILLYGPPGVGKT- 135

Query: 127 VIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIGSDAAALAYEAF 186
                  K     L + L   D                +S      + G +   +   A 
Sbjct: 136 ----YLSKYIAHKLSMPLIVMDL--------------ASSVSSYLGKTGQNLKKIVDYAK 177

Query: 187 KQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQVLDATTGQNAL 246
            +     +D    D   +  ++   +  + +++ VL +     P   + ++ AT   + L
Sbjct: 178 NRPSILFLDE--FDAVAKRRDDPSDIGELKRIVNVLLKELEDWPIHSI-IIAATNHPDLL 234

Query: 247 RQV 249
            + 
Sbjct: 235 DKA 237


>gi|16080678|ref|NP_391506.1| protein tyrosine kinase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221311580|ref|ZP_03593427.1| hypothetical protein Bsubs1_19596 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315907|ref|ZP_03597712.1| hypothetical protein BsubsN3_19512 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320820|ref|ZP_03602114.1| hypothetical protein BsubsJ_19465 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325106|ref|ZP_03606400.1| hypothetical protein BsubsS_19626 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|28202090|sp|P96716|YWQD_BACSU RecName: Full=Tyrosine-protein kinase YwqD
 gi|1894742|emb|CAB07457.1| ywqD [Bacillus subtilis subsp. subtilis str. 168]
 gi|2636150|emb|CAB15642.1| protein tyrosine kinase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 237

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 14/117 (11%)

Query: 121 GVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAID--QLKIWADRTSADFVCSEIGSDA 178
           G GK+T    L+   +  G KV+L   D  +        L+     TS     S +    
Sbjct: 56  GEGKSTTAANLAVVFAQQGKKVLLIDADLRKPTVHTAFFLENTVGLTSVLLKKSSMEQ-- 113

Query: 179 AALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDPHAPHSVLQ 235
                 A + +  K +DVL   T+G +  N   +     M  +       A   V+ 
Sbjct: 114 ------AVQASNEKHLDVL---TSGPIPPNPAELLSSKWMKELAYEACA-AYDMVIF 160


>gi|117919542|ref|YP_868734.1| putative ABC transporter ATP-binding protein [Shewanella sp. ANA-3]
 gi|117611874|gb|ABK47328.1| ABC transporter related [Shewanella sp. ANA-3]
          Length = 555

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 23/127 (18%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I V+G+NG GK+T++              ++A  DT     I+            ++  E
Sbjct: 35  IGVLGLNGSGKSTLL-------------RIMAGIDT----EIEGEARPMPGLKIGYLPQE 77

Query: 174 IGSDAAALAYEAFKQAQAK------KVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              D      EA ++A ++      ++D +    A    +   L    G++  +++  D 
Sbjct: 78  PKLDPTQTVREAIEEAVSEAKNALKRLDEVYAAYADPDADFDALAKEQGELEAIIQAQDA 137

Query: 228 HAPHSVL 234
           H   ++L
Sbjct: 138 HNLDNIL 144


>gi|134297300|ref|YP_001121035.1| sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase
           [Burkholderia vietnamiensis G4]
 gi|134140457|gb|ABO56200.1| sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase
           [Burkholderia vietnamiensis G4]
          Length = 641

 Score = 36.4 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%)

Query: 81  VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGL 140
           ++  L     +  + L    +       H+  VI   G++G GK+T+   L K++   G 
Sbjct: 449 IRHNLRRAQNVHRQALSITREDRERLNGHKGKVIWFTGLSGSGKSTIANALEKELHAQGK 508

Query: 141 KVMLAAGDTFRSA 153
           +  +  GD  R  
Sbjct: 509 RTYILDGDNVRQG 521


>gi|307564814|ref|ZP_07627342.1| phosphoribulokinase/uridine kinase family protein [Prevotella amnii
           CRIS 21A-A]
 gi|307346536|gb|EFN91845.1| phosphoribulokinase/uridine kinase family protein [Prevotella amnii
           CRIS 21A-A]
          Length = 553

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 105 WDFSHRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTF 150
              + +  V+L+ G +  GKTT   +LS ++   G+K +  + D +
Sbjct: 282 ISINDKLKVVLIAGPSSSGKTTFCKRLSIQLLACGIKPIQISLDDY 327


>gi|293604941|ref|ZP_06687338.1| branched-chain amino acid ABC superfamily ATP binding cassette
           transporter, ABC protein [Achromobacter piechaudii ATCC
           43553]
 gi|292816769|gb|EFF75853.1| branched-chain amino acid ABC superfamily ATP binding cassette
           transporter, ABC protein [Achromobacter piechaudii ATCC
           43553]
          Length = 251

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 25/70 (35%)

Query: 116 VVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSEIG 175
           +VG NG GKTT+   LS  +      V     D    A  +  ++   RT          
Sbjct: 36  LVGPNGAGKTTLFALLSGFLKPGAGSVHFDGHDITGRAPHESARLGLTRTFQIVQPFGAQ 95

Query: 176 SDAAALAYEA 185
           +    +A  A
Sbjct: 96  TVRQNIAVGA 105


>gi|260776381|ref|ZP_05885276.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607604|gb|EEX33869.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 427

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 42  DDGVREELEDLL--IRSDIGVAVAQKIVEELLTKRYAKDVSVQRVLYDVSELIHKMLMPL 99
           +D +REE++D+L   +S+  + V ++I E L      +D + + +   V     ++    
Sbjct: 46  NDIIREEIKDVLPKKQSE-ALPVPREIREHLDDYVIGQDYAKKVLAVAVYNHYKRLRNGD 104

Query: 100 SKPFNWDFSHRPHVILVVGVNGVGKTTVIGKLSKKM 135
           +     +       IL++G  G GKT +   L++ +
Sbjct: 105 TTSEGVELGKSN--ILLIGPTGSGKTLLAETLARFL 138


>gi|255526575|ref|ZP_05393483.1| putative transcriptional regulator, TetR family [Clostridium
          carboxidivorans P7]
 gi|296187553|ref|ZP_06855948.1| hypothetical protein CLCAR_3049 [Clostridium carboxidivorans P7]
 gi|255509760|gb|EET86092.1| putative transcriptional regulator, TetR family [Clostridium
          carboxidivorans P7]
 gi|296048075|gb|EFG87514.1| hypothetical protein CLCAR_3049 [Clostridium carboxidivorans P7]
          Length = 180

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 15 RKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDIG 59
          +KL +    T   L + +T ++S +++++   +EL DL   +D+ 
Sbjct: 4  KKLDRRIRKTKRTLLQALTKLMSKKKINNITVKELTDL---ADVN 45


>gi|170725740|ref|YP_001759766.1| putative ABC transporter ATP-binding protein [Shewanella woodyi
           ATCC 51908]
 gi|169811087|gb|ACA85671.1| ABC transporter related [Shewanella woodyi ATCC 51908]
          Length = 554

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 23/127 (18%)

Query: 114 ILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSADFVCSE 173
           I V+G+NG GK+T++              ++A  DT     I+            ++  E
Sbjct: 35  IGVLGLNGSGKSTLL-------------RIMAGIDT----EIEGEARPMQDLKIGYLPQE 77

Query: 174 IGSDAAALAYEAFKQAQA------KKVDVLIIDTAGRLHNNSILMAGIGKMIRVLKRLDP 227
              D      EA ++A +       ++D +    A    +   L    G++  +++  D 
Sbjct: 78  PKLDENQTVREAIEEAVSVAKNALTRLDEVYALYAEPDADFDALAKEQGQLEAIIQSQDA 137

Query: 228 HAPHSVL 234
           H   ++L
Sbjct: 138 HNLDNIL 144


>gi|163849140|ref|YP_001637184.1| ABC transporter-like protein [Chloroflexus aurantiacus J-10-fl]
 gi|222527114|ref|YP_002571585.1| ABC transporter-like protein [Chloroflexus sp. Y-400-fl]
 gi|163670429|gb|ABY36795.1| ABC transporter related [Chloroflexus aurantiacus J-10-fl]
 gi|222450993|gb|ACM55259.1| ABC transporter related [Chloroflexus sp. Y-400-fl]
          Length = 299

 Score = 36.4 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADRTSAD 168
            +  V   +G NG GKTT I  L   +     + ++   D  R  A + L+       A 
Sbjct: 27  GKGEVFGFLGPNGAGKTTTIAMLLGLVRPTKGQAIVLGHDVQREPA-EALRRVGAMIEAP 85

Query: 169 FV 170
             
Sbjct: 86  AF 87


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.155    0.431 

Lambda     K      H
   0.267   0.0473    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,163,357,125
Number of Sequences: 14124377
Number of extensions: 281376641
Number of successful extensions: 1497449
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 13499
Number of HSP's successfully gapped in prelim test: 8517
Number of HSP's that attempted gapping in prelim test: 1453323
Number of HSP's gapped (non-prelim): 26247
length of query: 321
length of database: 4,842,793,630
effective HSP length: 139
effective length of query: 182
effective length of database: 2,879,505,227
effective search space: 524069951314
effective search space used: 524069951314
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 82 (36.0 bits)